PeakID (cmd=getDiffExpression.pl ./peakQuanF0/allRawTags_filtered_peaks.txt balbcj_h3k27ac balbcj_h3k27ac balbcj_h3k27ac c57bl6j_h3k27ac c57bl6j_h3k27ac c57bl6j_h3k27ac -peaks)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	/home/h1bennet/strains/data/H3K27Ac/control/01_balbc_Kupffer_H3K27Ac_control_young_Balb10ABC_170915	/home/h1bennet/strains/data/H3K27Ac/control/01_balbc_Kupffer_H3K27Ac_control_young_Balb11AB_170915	/home/h1bennet/strains/data/H3K27Ac/control_cohort2_untrimmed/tag_mouse_balbcj_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_BALB1104_TDT_l20201212_AATCCGGA_CTACAGTT_S30_L001.balbcj.bowtie2_shifted_from_BALBCJ.sam	/home/h1bennet/strains/data/H3K27Ac/control/00_C57_Kupffer_H3K27Ac_control_young_C571A_170915	/home/h1bennet/strains/data/H3K27Ac/control/00_C57_Kupffer_H3K27Ac_control_young_C572A_180423	/home/h1bennet/strains/data/H3K27Ac/control_cohort2_untrimmed/tag_mouse_c57bl6j_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_C571104_TDT_l20201212_TAATACAG_ATATTCAC_S31_L001.c57bl6j.bowtie2_shifted_from_C57BL6J.sam	balbcj_h3k27ac vs. c57bl6j_h3k27ac Log2 Fold Change	balbcj_h3k27ac vs. c57bl6j_h3k27ac p-value	balbcj_h3k27ac vs. c57bl6j_h3k27ac adj. p-value
Merged-chr5-122769003-4	chr5	122768502	122769502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	10408.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	6.30207683435693	6.27994100744439	5.70387743632089	5.56641580760814	5.47405296069939	5.94551083967432	-0.826839123406688	0.0183994515837095	0.152991062993635
Merged-chr7-80269644-4	chr7	80269113	80270113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-42.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	6.81325444121238	6.53172297792075	6.81902153309645	6.70061482523609	6.79777235356031	6.5739956840848	-0.0358464622584455	0.892851402763033	0.975146620821922
Merged-chr1-34844127-2	chr1	34843627	34844627	+	558.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.05316840366466	6.02781938143544	5.69973632417832	6.12484764168205	6.26397872577681	5.73450690548405	0.219456151797435	0.503385067354828	0.837010205116912
Merged-chr9-95513473-2	chr9	95512962	95513962	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	3.984267139438	3.95630593514757	3.90629436944594	4.29479549799734	4.07109400450197	4.1255314379358	0.623836449575651	0.200342488785479	0.589299272018601
Merged-chr1-184735266-4	chr1	184734768	184735768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2775.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	6.45738490781314	6.36525482997646	6.56620436710277	6.4976352835923	6.20727344046047	6.37719699902998	-0.161304157556113	0.559988788324345	0.865168019835518
Merged-chr9-14074446-4	chr9	14073945	14074945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-201856.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	3.88278477063062	3.83492317110761	4.02015911055691	3.80267559804881	3.90843090358467	4.17651087192496	0.166465650209877	0.746466702301928	0.936300236930265
Merged-chr7-35647514-4	chr7	35647023	35648023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019746)	promoter-TSS (NM_019746)	-41.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	5.25026949584026	5.06695773782246	5.38699665612715	5.8064085839691	5.28685511026575	5.38986121498655	0.549591009488064	0.138599917364664	0.497503210563778
Merged-chr3-94838914-3	chr3	94838407	94839407	+	730.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	1340.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	6.57735616238354	7.10053844675997	7.10688357294705	6.92696573549205	7.42284270406111	7.18885459910076	0.380068096410018	0.195614841933248	0.583394973748449
Merged-chr5-31219289-2	chr5	31218789	31219789	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	1256.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	3.79375867483858	3.64867099032823	3.7784975671668	3.94097776565006	4.025959122712	4.09143283600174	0.876784243183039	0.0871790812711839	0.391430876020541
Merged-chr7-104296921-3	chr7	104296398	104297398	+	804.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8792.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	3.21358958705968	3.38976196317482	3.46534325814101	4.44910046358799	4.72069871804832	4.79739918806256	4.9661469141718	2.3608028764877e-10	2.8887894962763e-08
Merged-chr13-17977856-4	chr13	17977345	17978345	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15506.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	5.81536392885528	5.98709746162147	5.921558889932	6.44488874234276	6.45708129675223	6.0788894378377	0.74402591833179	0.0123552169208385	0.116572501366269
Merged-chr11-70475667-2	chr11	70475167	70476167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-15683.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	6.02311840374377	5.85989525514533	5.50104067249622	6.01645017998224	5.69719734398162	5.84587249178656	0.0557215116158172	0.867686162406488	0.969418741628431
Merged-chr15-94589888-4	chr15	94589370	94590370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008971)	promoter-TSS (NM_008971)	-46.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	7.67286091636209	8.23416425636162	8.10234658605153	8.00942567111411	8.03284101991112	8.35572436444546	0.16051073178437	0.534516108951905	0.853068627162717
Merged-chr2-84530283-2	chr2	84529783	84530783	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-23410.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.25373553096341	5.42514323300026	5.24959714002621	5.42334307144469	5.71321628495689	5.34689857228678	0.388367328428856	0.266640009214687	0.664169492193853
Merged-chr2-118861922-4	chr2	118861409	118862409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-91.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	5.46253005055511	5.44257147857633	5.49753144597437	5.17601144533946	5.5434106172727	5.66705967377045	0.0177666567324602	0.959290002260376	0.990174309444982
Merged-chr11-51915724-4	chr11	51915216	51916216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51915.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.51793933951815	7.5509462293901	7.60545644482053	7.55208636131725	7.55722939773961	7.54791795429483	-0.00571998179964428	0.979062538828774	0.995160277495735
Merged-chr3-137865751-4	chr3	137865258	137866258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316995, intron 3 of 4)	CpG-9623	1271.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	6.25483566994038	6.05707675039256	6.21975828006565	5.88501382433464	6.18181845441549	6.51456301376366	0.0558095794889527	0.859346940923898	0.967267211164924
Merged-chr5-35583577-4	chr5	35583076	35584076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357020, exon 1 of 19)	5' UTR (NM_001357020, exon 1 of 19)	542.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	8.48749861264865	8.86497787087549	8.25412872751965	8.49346504550481	8.82048024613215	8.1056875048445	-0.0722151009512856	0.798378365124632	0.951930937621884
Merged-chr8-82399160-3	chr8	82398615	82399615	+	802.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3471.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.85201871143722	6.82930311956416	6.8111657053079	7.52853373252519	7.76045026390433	7.47142252152109	1.14698355949788	1.68305232837381e-06	8.53402913707055e-05
Merged-chr10-31609555-3	chr10	31609102	31610102	+	954.6587519999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146349, exon 1 of 6)	5' UTR (NM_001146349, exon 1 of 6)	123.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	3.87451264291295	3.69715856034482	3.35140810454799	3.2451593919168	2.99123648828516	3.17633837874839	-2.17611290112273	0.00134638153154878	0.0227517697963263
Merged-chr4-149783326-4	chr4	149782847	149783847	+	757.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9080.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.07269285898253	6.46133370733137	6.93032708843212	7.09433614536358	7.12259567571864	6.87385028766294	0.296665052548716	0.302772232586765	0.699382001681875
Merged-chr18-82866972-1	chr18	82866472	82867472	+	552.0	f0_balb.idr	Intergenic	Intergenic	11075.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.11673037529858	4.19683759542726	4.32429010093107	4.51188502672892	4.2906318539362	4.43440865515078	0.53870308050971	0.235234459264796	0.6315179111056
Merged-chr1-184048862-4	chr1	184048361	184049361	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14480.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	5.93001357225558	5.93183529205407	5.68080031624374	6.28352998952368	6.60279928310721	5.98587433458394	0.797072856338722	0.0138955836794826	0.126163087383479
Merged-chr4-139382140-3	chr4	139381655	139382655	+	776.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	B3A|SINE|B2	1496.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	7.11286303459057	7.12189954390292	6.90971427325362	7.70805804741548	7.78368353908351	7.17818301373393	0.793689298127711	0.00334783799484532	0.0456517377704179
Merged-chr19-29255713-2	chr19	29255213	29256213	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	3910.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	4.41915789918232	4.1274765404121	4.20406679681482	4.69453362253887	4.27411317005062	4.32095424479492	0.483011897923293	0.309210778544095	0.704802606494279
Merged-chr11-61832630-2	chr11	61832130	61833130	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 7 of 26)	ORR1E|LTR|ERVL-MaLR	22462.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	3.18781979335731	3.32518544824675	3.15891011413544	3.3030061186674	3.33781559767033	3.45615995577047	0.541146490887503	0.380579229777828	0.762624904906886
Merged-chr8-126499720-2	chr8	126499220	126500220	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24655.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	2.84458060396108	2.58342694963774	2.87083207567942	2.77405968712088	2.65528917782944	2.6335865588908	-0.426475829582381	0.572836638578797	0.869934493236159
Merged-chr13-41801518-3	chr13	41801021	41802021	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	45967.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	2.99708662470367	3.01107424376737	3.56825646841303	2.96794903199595	2.92135884611114	3.06466739999911	-1.00089359254998	0.159927734333205	0.53246106427646
Merged-chr8-122560502-1	chr8	122560002	122561002	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-7513.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	5.17578463231788	5.4870493762928	5.61240926151193	5.03710477436718	5.11748033272653	5.00632811773882	-0.752484437361638	0.0411758747422434	0.253339410348461
Merged-chr14-45041244-2	chr14	45040744	45041744	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53133.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	2.29620030870576	2.15819730801116	2.42581382935714	2.14729313431654	2.0239859033209	2.17886258047974	-1.32961211293973	0.146222820815051	1
Merged-chr4-136123219-4	chr4	136122741	136123741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20581.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.48644827525309	7.1977857309436	7.39642482687164	7.67658658023576	7.54608045042594	7.26028721270557	0.216487949236965	0.386322424923228	0.767095008543418
Merged-chr17-21384256-1	chr17	21383756	21384756	+	616.0	f1_c57bl6.idr	intron (NM_172486, intron 1 of 3)	(CAA)n|Simple_repeat|Simple_repeat	508.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	5.26211882928596	5.4101056437197	5.60625111716031	5.43144005851131	5.47798072565858	5.32336889746558	-0.011925247877328	0.972229683136846	0.993868590220018
Merged-chr11-62005709-4	chr11	62005214	62006214	+	887.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48951.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	7.09585723335624	7.3834317521969	7.25740385723682	6.62521818572772	6.80994954600241	6.98404082421195	-0.673215750950919	0.00902259479425063	0.0937796626019023
Merged-chr1-119837566-4	chr1	119837064	119838064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019933)	promoter-TSS (NM_019933)	-493.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	4.0375942810681	3.64418133728194	3.63068475564781	4.00081716861751	3.8026111239804	3.86540587938284	0.311310107324547	0.572169066869543	0.869807909725036
Merged-chr10-118081118-2	chr10	118080581	118081581	+	677.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-60706.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.0105901483732	6.70137042663142	6.91015103779464	7.08839295754594	7.18090975590269	6.56142458802642	0.159725635401025	0.581105240219587	0.873228285171611
Merged-chr1-33503716-3	chr1	33503222	33504222	+	756.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	Tigger14a|DNA|TcMar-Tigger	166072.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	4.91772497268539	5.00626721891694	5.23312552052502	4.7642612710853	5.13279314614232	5.4377491844888	0.170362294755979	0.675539052334883	0.912197928643375
Merged-chr10-86880585-2	chr10	86880085	86881085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	101580.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.66671911731306	5.9791735803416	6.13697607090877	5.62269161510077	5.79734824360772	5.51431723013013	-0.493558514840675	0.138899069888552	0.497922464673413
Merged-chr12-99789788-4	chr12	99789309	99790309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	93633.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	6.29191375263348	5.77054986018266	5.48475202635095	5.87364052591005	5.71918234149849	6.00448715987136	-0.0724050209531327	0.842265835145326	0.963002495523594
Merged-chr11-96075846-4	chr11	96075361	96076361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161419)	promoter-TSS (NM_001161419)	-167.0	NM_007506	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	6.83561217201379	6.96914092369326	6.65150056239676	6.94232173919126	7.24572003822232	6.60459521359311	0.214747738344134	0.459667299479532	0.813819730244683
Merged-chr9-116175255-4	chr9	116174777	116175777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	86.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	9.23691516746047	9.63926289041724	9.03074982207434	8.94080749146245	9.23741656960316	9.03874534413458	-0.342916531258106	0.158478387317657	0.530287917799799
Merged-chr5-33272573-2	chr5	33272073	33273073	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	2431.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	2.84435517020588	2.76504009722415	3.26586351334918	2.8459554590289	2.64984075233864	3.2329865936218	-0.19935975348078	0.7981577048134	0.951930937621884
Merged-chr5-134182904-2	chr5	134182404	134183404	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	3.48291041399347	3.93454417543189	3.70983465200552	3.68667714367809	3.74556984450339	3.72775419267478	-0.0188054869937503	0.973347053377452	0.994035429262205
Merged-chr10-41937385-4	chr10	41936858	41937858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	49919.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.32762771519994	3.98819050392333	4.06800071370251	4.19308728113108	3.97423808246013	3.88087108665681	-0.327916466748799	0.517448215499455	0.844563183901112
Merged-chr11-94688245-2	chr11	94687745	94688745	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10752.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	5.54251070036082	5.27881107137892	5.14577861470704	5.36689869137617	4.91343313310399	5.03095256261518	-0.452213584158339	0.240021755599775	0.637026271998881
Merged-chr7-28444795-4	chr7	28444297	28445297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3860.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.23930642173763	7.03352949704107	7.31320628371816	7.12178721406079	7.21958591667522	7.1872576179187	-0.0266287270074244	0.911787978350444	0.980182089643468
Merged-chr2-104732295-4	chr2	104731784	104732784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	intron (NM_144804, intron 1 of 8)	10517.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	7.31218929259109	7.42716891496542	7.12602804002974	6.96035859312777	7.10947622965049	7.12021584452644	-0.354410610719647	0.145099634096464	0.508141849911556
Merged-chr17-12158788-2	chr17	12158288	12159288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	39504.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.82585477719206	3.83213063605625	3.67805100331029	3.36111073426791	3.48683779720487	3.84787814526847	-0.720516874046491	0.21562684695543	0.609048894570221
Merged-chr7-90138577-4	chr7	90138087	90139087	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	8374.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.37145242168298	6.33605194441659	6.13333844194299	6.21188167056359	6.24063223495783	6.05805065661322	-0.188946484152611	0.504698491571222	0.837806481766929
Merged-chr18-46596419-2	chr18	46595919	46596919	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	intron (NM_025698, intron 1 of 2)	1116.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	4.98497184203326	5.31484614043149	4.96535290530459	5.47425934898804	5.5204121428517	5.03236645694272	0.532401879548675	0.169574982471899	0.546439877378084
Merged-chr4-128925157-4	chr4	128924657	128925657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	37298.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	5.26599264772078	4.65898686086071	5.10131509779061	5.32676453870946	5.2509343948836	5.19940076788727	0.471267792652229	0.235296938262144	0.63152659953927
Merged-chr6-123267063-4	chr6	123266567	123267567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010819, exon 3 of 6)	exon (NM_010819, exon 3 of 6)	4960.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	5.21017604338967	5.2602537685307	4.46716010308536	5.06444377199657	4.55235145677999	4.38605225400369	-0.718418606658418	0.15319115042122	0.522003484275517
Merged-chr1-166409840-4	chr1	166409340	166410340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142948)	promoter-TSS (NM_001142948)	-12.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	6.32343456682084	5.84220364705731	5.97062654127571	6.2075638776157	5.77639225108037	5.3701791495913	-0.393235556704684	0.295203935255812	0.692100223852965
Merged-chr13-81233069-4	chr13	81232542	81233542	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	MIR|SINE|MIR	268968.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.10778076938172	5.34125127338367	5.34739274197722	4.9811875592098	4.84563676740884	5.16457715356748	-0.57579095459369	0.121499441651884	0.466294245697616
Merged-chr9-110525910-4	chr9	110525417	110526417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010628)	TTS (NM_010628)	-6680.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	4.70885048833824	4.83675021583774	4.77646927616349	4.80123974427639	4.96024347510439	5.27503340403314	0.53440677961718	0.181425463161778	0.56376927731879
Merged-chr11-3247523-3	chr11	3247027	3248027	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037301, intron 1 of 1)	intron (NR_037301, intron 1 of 1)	18936.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	3.29112631765189	3.20980038451343	3.73852071472125	3.4873774779176	3.76848767245749	3.44489386049267	0.556888178678964	0.380565462708731	0.762624904906886
Merged-chr11-116423479-2	chr11	116422887	116423887	+	624.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10355.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	6.85610727621808	6.5697011342473	6.12977193141143	6.96803341907335	7.20323579648651	6.84105160921438	0.70162240854417	0.0233062462666615	0.178684800456682
Merged-chr3-137952999-4	chr3	137952505	137953505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28544.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	7.28194054936306	6.69578186885305	7.05721896517377	7.15310141085459	7.14686015753562	6.99481796801635	0.103981506984277	0.705810099702755	0.922834459892351
Merged-chr14-10546138-4	chr14	10545641	10546641	+	807.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-92683.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	2.83297445703621	2.78803637288666	2.87318636458984	3.0150786201566	2.64705014895846	3.0637006911993	0.421279717299923	0.566182336828187	0.867252676315301
Merged-chr18-75392468-3	chr18	75391932	75392932	+	900.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	25067.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	2.98356040867439	2.73911973144532	3.0260660885625	2.97829077278491	2.89979792371727	3.26368685042952	0.607872531122089	0.391946762441111	0.770782330002482
Merged-chr10-58452460-4	chr10	58451965	58452965	+	757.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 2 of 28)	intron (NM_011240, intron 2 of 28)	5613.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	4.47855928552346	4.51233899030457	4.77270659765784	4.60837378414746	4.93571874341126	4.87384354020182	0.543449161227983	0.193996477940158	0.581296310830689
Merged-chr5-21355048-5	chr5	21354530	21355530	+	782.4571530000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-17643.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.53027395152608	4.67043847685093	4.79287693317433	4.77048349471799	5.01717852638382	4.96590777862362	0.598561872537618	0.134595455109334	0.490439383589701
Merged-chr4-150589562-1	chr4	150589062	150590062	+	689.0	f0_balb.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62612.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.08588983054171	5.7981467394239	5.86633868164389	6.29862273773364	6.19517419712204	5.74076649436199	0.320661746907612	0.323314116762621	0.716669002812727
Merged-chr1-172311485-6	chr1	172311024	172312024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-843.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	7.34148016936171	7.17803951015812	7.0888670901408	7.29224999453641	7.56747792742288	7.46956961853584	0.353448000270366	0.143587347339354	0.505883003261439
Merged-chr12-40586753-2	chr12	40586253	40587253	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	Lx7|LINE|L1	140700.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.42030569088839	6.55307710831275	6.04998936203797	6.18642302429205	6.4624449829875	6.08782935455982	-0.170345637644304	0.582360606118374	0.873702353685426
Merged-chr4-135203420-4	chr4	135202928	135203928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.14807160377224	4.71628906733948	4.7101997120353	4.88799576136921	4.6280753017021	4.60854684123606	-0.377976492323704	0.374564139879607	0.758106266771134
Merged-chr2-72995653-2	chr2	72995153	72996153	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15207.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	3.97017660688473	3.77071190642016	4.07001834196891	4.30913006686797	4.09958290968176	4.23005972310359	0.805724999799171	0.102791135491867	0.427502614185397
Merged-chr12-105972518-3	chr12	105971992	105972992	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-37771.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	1.94962894629647	1.88877202375123	1.893846047431	2.16885721922397	2.14015071286233	2.31009794825012	2.50293062667659	0.0149628249613304	1
Merged-chr2-11438423-4	chr2	11437936	11438936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39936.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	4.75044664028468	4.79987208470868	4.4050811236378	4.54754871873681	4.21226315258276	4.28611808563279	-0.806595638072669	0.0769273110454155	0.3654980698605
Merged-chr8-105453459-4	chr8	105452983	105453983	+	807.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 6 of 10)	intron (NM_001033371, intron 6 of 10)	17939.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	3.26587143510304	3.49149811320564	3.38721427193314	3.39319763749425	3.12431963913984	3.51174820613466	-0.156230506228826	0.803159671916355	0.953422605427866
Merged-chr15-64083376-4	chr15	64082874	64083874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22926.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.00357935174956	7.0087620452063	6.56801054665953	6.39047732986683	6.71359220435309	6.82203955740863	-0.363970381386187	0.20653137122415	0.597141275948059
Merged-chr17-44783336-4	chr17	44782832	44783832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	6166.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	5.93141687949276	6.3232841242088	6.04228895233384	5.85394956013719	6.00940294235337	6.26870679038293	-0.114523515525829	0.716372064073005	0.926569584146506
Merged-chr4-6369635-1	chr4	6369135	6370135	+	578.0	f0_balb.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3955.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.01352391993648	7.08557447200615	7.07256009863146	7.11074378149595	7.22700905100469	6.86430034872411	0.0445313399276469	0.858064136918097	0.966810565896068
Merged-chr12-4840247-4	chr12	4839741	4840741	+	850.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	1354.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	4.44046278964178	4.3521066001554	4.43158155134885	4.37871682109359	4.31457971094261	4.5389458874806	-0.00286191458126404	0.994782851181516	0.998961028701257
Merged-chr2-72196731-3	chr2	72196219	72197219	+	944.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 8 of 26)	ID_B1|SINE|B4	-88918.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.04847902288278	3.04412348185034	3.06869483227549	3.6729942230557	3.64959894794414	3.66298703154928	2.5707927870989	9.59018415502643e-05	0.00273843528885189
Merged-chr1-172586587-4	chr1	172586055	172587055	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029084, intron 2 of 4)	intron (NM_029084, intron 2 of 4)	4013.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	3.51099658902477	3.51797063386653	3.55757398700788	4.39356042072183	3.94339129005872	4.0088533715881	1.96325811724451	0.000443612999107019	0.00956472067337451
Merged-chr13-52035937-4	chr13	52035433	52036433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60808.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.93858408230241	6.59058359418088	6.91315120773903	7.25078363430854	7.16252739746562	6.86947208301628	0.444980992671676	0.0977222614019982	0.416925964185171
Merged-chr1-15805018-2	chr1	15804518	15805518	+	713.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-628.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	4.26095941065123	4.64259747407103	4.44585043463901	4.33092124840102	4.47960310843581	4.42693614076402	-0.118107992266713	0.792790310552813	0.950051439909475
Merged-chr12-24592535-4	chr12	24592027	24593027	+	850.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	11808.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	5.03550465848602	5.69962986098498	5.17709444331973	5.47647728744569	5.61263370949536	5.37553486896766	0.285120462760892	0.46226074206698	0.815159087955196
Merged-chr11-59227002-4	chr11	59226511	59227511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1151.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	8.03717811881544	8.48817344106432	8.12243395675121	8.20976355712039	8.64112573917586	8.10741746083067	0.158217859375768	0.546353314328121	0.858677569813088
Merged-chr15-79892360-4	chr15	79891899	79892899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-9.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	6.59023966989041	6.73704800389834	6.79227069249288	7.31094560523461	7.6525213350012	7.35322627773491	1.13399759319505	7.43851942188985e-06	0.000311183672225546
Merged-chr14-50930476-4	chr14	50930023	50931023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310507, intron 1 of 5)	CpG	326.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	8.27731475414249	8.54453954247371	8.29216342462984	8.20882135319765	8.43043455968772	8.15903973852788	-0.144886745083823	0.515698342208145	0.84387216239357
Merged-chr3-154692485-2	chr3	154691985	154692985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18648.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	2.52334081492808	2.60546879570539	2.84745788634686	2.7602892245154	2.76121446864734	3.08873869535257	1.11834362891904	0.145882881236593	0.509302356675446
Merged-chr13-94788983-4	chr13	94788515	94789515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009321)	promoter-TSS (NM_009321)	72.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	6.59945673728105	6.37198073431977	6.21423761071626	6.39685941603225	5.93825132451915	6.07536327096641	-0.434868796071983	0.157912423921198	0.529476893092205
Merged-chr5-114855864-2	chr5	114855364	114856364	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	2150.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	5.72435128739507	5.36562768422925	5.08220249060779	5.47144240914861	5.64044149849251	5.25804932299986	0.0869475146986129	0.819741237561261	0.957288083214325
Merged-chr4-107313824-1	chr4	107313324	107314324	+	657.333313	f0_balb.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-539.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	5.27716728886896	5.69289457138764	5.52980573786595	4.92030189283162	5.29483562702842	4.89844634742344	-0.889760681722212	0.0221117547129595	0.172628531258767
Merged-chr8-70562000-3	chr8	70561505	70562505	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	22330.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.50118787079594	5.41745707822594	5.03030319852871	4.9076592784079	4.4300686469353	4.40619837960855	-1.60284320023682	0.000231987746118205	0.00564917658150529
Merged-chr5-36466096-4	chr5	36465588	36466588	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024478, intron 1 of 3)	intron (NM_024478, intron 1 of 3)	903.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	5.60669948936401	5.90215561934665	5.90297604462561	6.07997152488236	5.86490213736991	5.5635718038933	0.0952294196348307	0.774703899607508	0.944493464665915
Merged-chr7-97356449-2	chr7	97355949	97356949	+	994.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-15168.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	7.14122573798944	7.23214214918835	7.04115028028837	7.28156729952382	7.51710034122097	7.15172879166037	0.283456993870258	0.252545257301227	0.649921954382832
Merged-chr7-116446886-4	chr7	116446377	116447377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3419.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.92253324565903	6.93128305499014	7.07079002650629	6.71782324307106	6.80684214523941	6.88995191011099	-0.260248334915637	0.291546539264626	0.689156684160421
Merged-chr16-20717738-4	chr16	20717253	20718253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145632)	promoter-TSS (NM_145632)	-73.0	NM_145632	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	6.67656634809267	6.75803613804091	6.50343192217351	6.49340003691475	6.92303157037964	6.45035467995902	-0.00256615374823072	0.992904923121821	0.998605548488759
Merged-chr11-34770752-4	chr11	34770281	34771281	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	13124.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	5.93622675795719	6.17566865025452	6.23312086261922	5.98585571827105	6.19841091099823	5.96809015551099	-0.0902807704875109	0.762905022186813	0.941663714620562
Merged-chr15-89174540-2	chr15	89174040	89175040	+	861.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-589.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.96964998926657	5.7726724134189	6.37699577337566	6.22397822890211	6.38807158461816	5.50497595235403	0.0782661658084126	0.838275586658793	0.962493207106836
Merged-chr14-55734109-3	chr14	55733616	55734616	+	854.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11568.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	6.2641067670244	5.7235354856983	5.94772942225409	5.91399436428848	5.75144257208248	5.88942599582073	-0.265917424254494	0.415110592033389	0.786136540436176
Merged-chr19-37307985-4	chr19	37307482	37308482	+	918.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 10 of 23)	L1M5|LINE|L1	22631.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	5.48812585823907	5.62541470023199	5.65989447536156	5.81725144368178	5.85007251541599	5.9438323018695	0.50757339719379	0.100790622580613	0.423393887504426
Merged-chr6-114259747-2	chr6	114259247	114260247	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22888.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	5.17499961295182	5.15723045486646	4.79391275876532	4.83241644142305	4.66560458521415	4.51272533568496	-0.849934827460239	0.0384155843398878	0.242617376983179
Merged-chr17-65745068-4	chr17	65744585	65745585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	27667.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.61092911698372	4.14136542820803	4.49460042193909	4.81343042359378	4.73112828209819	4.64545712745808	0.739551933902482	0.0961212144514349	0.413389282447049
Merged-chr13-99344705-4	chr13	99344200	99345200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026873)	promoter-TSS (NM_026873)	-22.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.82475233733761	6.93591740353926	6.63190842704415	6.52395821793198	6.79340977050871	6.22154512752948	-0.408126415525153	0.164652038091331	0.539208350811795
Merged-chr1-186221722-3	chr1	186221306	186222306	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104496.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	3.23773302857632	3.31504640645317	3.17102716595973	2.87544491915392	2.81375834838658	3.1276223163617	-1.43852970744735	0.0385925667939954	0.243494866378129
Merged-chr4-59862583-4	chr4	59862095	59863095	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	L1_Mus4|LINE|L1	52461.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.72955758042796	5.66507668255115	6.01267736412757	4.98582018247275	5.15474044301548	5.55983875935583	-1.06972511172587	0.00346809745754862	0.0468920138524059
Merged-chr14-37165417-4	chr14	37164906	37165906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30084.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	5.82041288421243	5.90422738678436	5.64530361087356	5.8905550955498	6.16303661906114	6.1660116684963	0.483259626532597	0.116478509671991	0.455679603553968
Merged-chr1-88005144-4	chr1	88004637	88005637	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 2 of 27)	intron (NM_001033291, intron 2 of 27)	3414.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	2.94825421818228	2.67497692595223	2.9482533529747	2.84514492930526	2.38196743871856	3.07775530825855	-0.17648289298723	0.902722907886428	0.977585531827525
Merged-chr4-22421045-2	chr4	22420545	22421545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 6 of 8)	intron (NM_172988, intron 6 of 8)	63502.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	2.36246602868361	2.29387826816146	2.24482851390833	2.38554428988774	2.34145519135035	2.57801213023383	0.84460019211426	0.314835395581311	1
Merged-chr17-74295164-7	chr17	74294654	74295654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133771)	promoter-TSS (NM_133771)	-291.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	7.2664681616409	6.91276226289883	7.19196879935417	7.37480190467826	6.90268491056393	6.71324237338694	-0.147193931300769	0.615442651818588	0.88797905622544
Merged-chr9-7571734-4	chr9	7571232	7572232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 1 of 9)	intron (NM_001310717, intron 1 of 9)	336.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	7.47627077941966	7.86761634521636	7.50689767114557	7.71424709362708	8.35975165719195	7.79918491699901	0.523646307486621	0.0634117776600123	0.328009896527061
Merged-chr9-56258103-3	chr9	56257627	56258627	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97057.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	6.97319335702262	7.20008392756201	6.67746543855265	7.53661597823487	7.79643675237263	7.12184474112886	0.812366215280465	0.00603340917716379	0.0700471481531247
Merged-chr8-71537539-4	chr8	71537040	71538040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-103.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	8.23117792492662	8.47521063654561	7.88463807083315	8.17640460288834	8.62886572402168	7.84573368090051	0.0583127513774452	0.84188327993409	0.963002495523594
Merged-chr6-30460084-4	chr6	30459578	30460578	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131049)	promoter-TSS (NR_131049)	-907.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	2.68421153354705	2.61166547994776	2.83043440416243	2.73549010183455	2.69553403435324	2.5245112594485	-0.268245596562138	0.725925947342042	1
Merged-chr3-127762073-4	chr3	127761582	127762582	+	828.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	18445.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	5.15267785831562	5.14629899413234	4.94809523040937	4.67283869634371	4.46090647774821	4.48220415649365	-1.25969080611343	0.00173253150713726	0.0276795346476495
Merged-chr1-74507467-2	chr1	74506967	74507967	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021383, intron 1 of 7)	intron (NM_021383, intron 1 of 7)	1407.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	4.52712968771515	4.81662966349114	4.90395500890065	5.15319362020678	5.08126069305241	5.00496080042088	0.72949162421137	0.0629328858503922	0.326384914350501
Merged-chr10-87812851-3	chr10	87812344	87813344	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45421.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.79379716183062	3.5582372333544	3.88315263689219	3.54715502212373	3.54715794675434	3.42967439472925	-0.815475701551391	0.154809100807655	0.524112919134617
Merged-chr7-29008901-3	chr7	29008399	29009399	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 100 of 105)	intron (NM_009109, intron 100 of 105)	26045.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	6.00299213298138	6.02161911004403	6.11089725209362	4.45709203616689	4.23614530270717	4.48867517035843	-3.67745217744825	7.9616847713351e-19	4.47618828684629e-16
Merged-chr4-117219044-4	chr4	117218551	117219551	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	32866.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	4.77144846960233	4.24445431859363	4.83988735306403	4.18271648643199	4.3803410562272	4.40757181878303	-0.781329757212815	0.101884291190618	0.425795484750825
Merged-chr5-19888655-4	chr5	19888160	19889160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-18858.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	3.14013121886213	3.05911224372937	3.27225601356086	3.06476671546308	3.12280797931603	3.23284212490635	-0.0692797217045667	0.914162305342819	0.980894573251353
Merged-chr9-21728540-4	chr9	21728034	21729034	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	RMER4B|LTR|ERVK	4958.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	6.61912726701381	6.5062705366519	6.22611700232205	6.4755229835279	6.60923411513125	6.19876908031207	-0.0318225144431541	0.913665129055837	0.980793519261002
Merged-chr2-174438961-4	chr2	174438449	174439449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	90.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	9.15550092061111	9.54107968827146	8.93314576097904	9.14603379890234	9.66187008820875	8.99187989430372	0.089963939062981	0.744102086112175	0.9358862398815
Merged-chr8-122434101-2	chr8	122433601	122434601	+	856.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138656, exon 10 of 10)	exon (NM_138656, exon 10 of 10)	-1161.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	4.35088814405814	4.08361640668407	4.17385919100056	3.70168011082489	3.80911370647235	3.68461235274672	-1.44238996694795	0.00602665343406224	0.0700058389191538
Merged-chr6-121110360-4	chr6	121109825	121110825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	20697.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	4.71738634939551	4.67388948899208	4.88562975600329	4.98805140052257	4.82183833047326	4.50470171785226	0.0912261409307405	0.826901012696606	0.959278302444461
Merged-chr6-48428991-2	chr6	48428377	48429377	+	812.5	f0_balb.idr|f1_balb.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	16213.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	2.94739842533453	3.08500307202992	3.20665294395067	2.89605979737592	2.59708470555091	2.8738984567966	-1.45688548592011	0.0517714620056459	0.290400418671012
Merged-chr4-41356937-4	chr4	41356435	41357435	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	B4|SINE|B4	4972.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	3.98116748874267	4.35298810766838	4.09998837282002	3.95395668253761	3.99813382276285	3.92104284973085	-0.577165953418417	0.250128536528835	0.647307401971844
Merged-chr12-87261652-4	chr12	87261169	87262169	+	712.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	MTC|LTR|ERVL-MaLR	2575.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	4.85084957620134	4.76979549826193	4.90414221827279	4.8898156185307	5.06922521261898	5.00443971856353	0.341054869815715	0.368407104214519	0.753380524534667
Merged-chr13-37452350-5	chr13	37451854	37452854	+	840.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107009.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.85722608378894	5.69384578058419	5.87890289464978	5.74493036551786	5.4857466277981	5.39144499833645	-0.47000628212734	0.150503750994535	0.517334494681425
Merged-chr16-55698725-4	chr16	55698206	55699206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123432.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.50249331960733	6.64427178644829	6.49753642804854	6.49407683175741	6.72172229764273	6.59186998994356	0.0915287399475685	0.728905643662229	0.930478966998914
Merged-chr16-4777315-4	chr16	4776797	4777797	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	12165.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	5.10679766447182	5.07035044722923	4.40404584796084	4.82549996068755	4.52519162857869	4.86352795612726	-0.377553528111563	0.409404824170078	0.782742965684242
Merged-chr11-101976464-2	chr11	101975964	101976964	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	8327.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	3.09038947217058	2.72108792785209	3.043446993345	2.99519009608517	2.94204587271839	3.22754171873071	0.436121917207383	0.541648512341042	0.856879077002901
Merged-chr13-19394338-4	chr13	19393827	19394827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	1486.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	4.51348713664761	4.82749526849504	4.84144232276586	5.04094225242276	5.21194386951077	5.1826949584918	0.910495887872737	0.0198459632643106	0.160605223818008
Merged-chr3-87616569-1	chr3	87616069	87617069	+	572.0	f1_balb.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-990.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	4.9319528780405	4.65847425766776	4.85071721257046	4.361417213786	4.55636935430989	4.88002038255234	-0.491232466697848	0.255891965682034	0.652867953552546
Merged-chr1-173427555-4	chr1	173427049	173428049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	RMER19B|LTR|ERVK	6945.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.67055969389176	7.89367784691955	7.64979586222039	7.91653995236027	8.24871609421607	7.60938900209381	0.308459077170378	0.237800491676948	0.634356560418258
Merged-chr4-149339948-1	chr4	149339448	149340448	+	563.0	f0_balb.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	5309.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	2.74730499289455	2.5500463076035	2.7988840434285	2.56779936756783	2.56272549913651	2.62880989405721	-0.650182603171179	0.395854848508895	1
Merged-chr6-136811558-4	chr6	136811065	136812065	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3317.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.71906513799353	4.54728853901642	4.37471107869282	5.26461914240335	4.92288730997591	5.21946447339389	1.28267657776638	0.00223066215445414	0.0335700735300814
Merged-chr11-114912292-2	chr11	114911792	114912792	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	22094.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	3.92219062060354	3.50256307247831	3.81141214418167	3.73431830527841	3.84527691668606	3.88073515310777	0.207707331648725	0.706089440122404	0.922878730238431
Merged-chr16-55809483-1	chr16	55808983	55809983	+	935.0	f0_balb.idr	Intergenic	Intergenic	12655.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.94059891254052	2.97482974789086	3.03753128809868	2.88946584955502	2.65926225908916	3.05217433578088	-0.55297842087576	0.442896200431744	0.803436014387
Merged-chr1-180250263-4	chr1	180249750	180250750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4300.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	5.02335511210105	4.78926001776259	4.74383023076941	4.78588133549247	4.69545676532049	4.6030169202188	-0.373516585527907	0.354396141005066	0.741552937201367
Merged-chr2-3333485-2	chr2	3332985	3333985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-857.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	6.11137649891726	6.63499077480215	6.16559768727085	6.51597147349608	6.58186313437215	6.08851212980503	0.144332616795863	0.656152801576463	0.904578029757755
Merged-chr3-69721935-4	chr3	69721422	69722422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133787)	promoter-TSS (NM_133787)	-133.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	7.76406354774267	7.48461227206891	7.16280443827247	7.60547671610751	7.23251126356475	6.64215194543442	-0.398215277539551	0.228922651297975	0.624363092366069
Merged-chr14-75195738-4	chr14	75195234	75196234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-46553.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	6.40995878356509	6.38575331068463	6.34025721775947	6.1421869924887	6.35165665065639	6.0846262840558	-0.285133970956167	0.308676018578893	0.704643548588986
Merged-chr11-34781003-2	chr11	34780503	34781503	+	674.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	MLT1J|LTR|ERVL-MaLR	2902.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	3.13513365753416	3.18802742521899	3.26548012461867	3.18587504606663	3.09506723487039	2.98142895104537	-0.440117544620757	0.498682422407254	0.834024099607308
Merged-chr7-88259071-2	chr7	88258571	88259571	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-19014.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.56400374943327	3.49685173583505	3.3893916987886	3.55602901142764	3.45841559105814	3.15315957243161	-0.304396428704474	0.625992773601097	0.892770422921587
Merged-chr14-64941696-4	chr14	64941205	64942205	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	8152.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.80523938266366	4.789680746298	5.13781341372527	4.86095740389914	4.57347235805865	5.00927332724422	-0.213940380872104	0.606265347842262	0.883949728631287
Merged-chr15-82353819-1	chr15	82353319	82354319	+	697.0	f1_c57bl6.idr	intron (NM_025987, intron 1 of 2)	intron (NM_025987, intron 1 of 2)	472.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	7.87845308115922	8.34576192557238	7.67419537268837	7.87425426261284	8.05694797002502	7.43972832430565	-0.257949119876419	0.376587260162572	0.759336465825071
Merged-chr1-168362658-4	chr1	168362168	168363168	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	69501.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	2.2244562636153	2.4163838032562	2.50195251371414	2.22022501553171	2.05830064119196	2.32416403395274	-1.28694912991795	0.157353441896758	1
Merged-chr8-10834836-2	chr8	10834336	10835336	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47618.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.02474579222206	4.53643856510749	4.31019757069048	4.19370018520369	4.32401021825832	4.1813281016583	-1.08416768444993	0.0269055076822583	0.195336585815708
Merged-chr17-48167273-4	chr17	48166767	48167767	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113556)	promoter-TSS (NM_001113556)	-10.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	3.97009342873763	3.89392798072847	4.32747456645473	3.99501882464337	3.71605932733383	3.85325556008265	-0.640382967195111	0.227024982429757	0.622066543880371
Merged-chr13-93304804-1	chr13	93304304	93305304	+	841.0	f1_c57bl6.idr	5' UTR (NM_001284189, exon 1 of 9)	5' UTR (NM_001284189, exon 1 of 9)	1047.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	5.31375038264189	5.62139460582633	5.21909051775646	5.41438336434031	5.28922796306187	5.21560409620421	-0.187292647932232	0.599781784227986	0.881197893564797
Merged-chr13-44733752-8	chr13	44733256	44734256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	CpG	2485.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	8.13020285918611	7.80951087468024	7.54338172607287	7.74676297243126	7.49423271603869	7.19661335301038	-0.508136905833272	0.0678741770489928	0.340919789463473
Merged-chr11-115471990-2	chr11	115471490	115472490	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359606, intron 3 of 3)	intron (NM_001359606, intron 3 of 3)	-3677.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	2.76985119344827	2.84630396359429	3.01198396405652	2.94083611668315	2.76182733415709	2.65166317725072	-0.419457830740304	0.569845574831218	0.868897023832802
Merged-chr11-87425346-2	chr11	87424846	87425846	+	679.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-2245.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.644299417724	5.57519335121224	5.73268714531517	6.09469409489141	5.96255363063387	6.27785994014146	0.818897633311191	0.00764469463151057	0.0832885278864512
Merged-chr11-118362620-3	chr11	118362113	118363113	+	977.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7202.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.53079709926951	5.30729664144549	5.5593782980254	5.2251465461983	5.33407289637239	5.30022299202797	-0.346081669808968	0.312165654975391	0.707013544992643
Merged-chr4-129914422-2	chr4	129913922	129914922	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8196.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	3.99003093198313	4.17586549182675	4.11958077375469	4.08500703901787	4.14275006175771	4.36282158255674	0.276156434650688	0.564309118562925	0.866276147417766
Merged-chr10-81543826-2	chr10	81543326	81544326	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	1220.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	3.96454986161589	3.96105164765723	4.44403788702017	3.88734532219129	3.80182558929936	4.35573835379702	-0.302953198549233	0.580373336127689	0.872810001129836
Merged-chr11-53429344-2	chr11	53428844	53429844	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025352, intron 1 of 1)	B3|SINE|B2	1487.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	4.01834631013961	3.83312153230613	3.6813131688164	4.1041438212248	3.93631772014931	3.80968755573691	0.306581104681237	0.563524078012843	0.865992481769395
Merged-chr1-136685487-4	chr1	136685005	136686005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1876.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	8.02354976674833	7.68825734583052	7.50402009407327	8.10282847833178	8.10624773899064	7.80921679329425	0.36156583096709	0.152486993008678	0.520581697545072
Merged-chr15-63498691-4	chr15	63498167	63499167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19059.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.11570079032237	5.27678898787934	5.4688099118252	4.97382379317468	5.24623903340164	5.1745309228953	-0.300884583025598	0.413851916386719	0.785390988041999
Merged-chr6-21973658-4	chr6	21973182	21974182	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023626, exon 12 of 12)	exon (NM_023626, exon 12 of 12)	-12228.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	2.86537557118642	3.12903165439293	3.03810382444611	3.07378637010039	2.88896751033763	2.99105182873822	-0.145645624548628	0.831757576252395	0.960478468368024
Merged-chr2-32548145-4	chr2	32547638	32548638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12779.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.60442850448939	5.58461839530597	5.52766598928564	5.30557232544349	5.09035586245435	5.07762476561279	-0.811755090642069	0.0177233532770978	0.149082569700845
Merged-chr16-17921998-4	chr16	17921528	17922528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	6191.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	7.60081791348775	7.74641857973082	7.59019028352617	7.80492893433975	7.80383451267641	7.34971652256677	0.0424241084973627	0.863424966778058	0.968254670575276
Merged-chr5-32754098-4	chr5	32753599	32754599	+	833.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-7757.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	4.20745309009309	4.46949263914013	4.25333391031662	4.14127094980268	4.37011277105224	4.61164317390247	0.163032070220605	0.729759836294912	0.930635866770147
Merged-chr4-16214509-2	chr4	16214009	16215009	+	597.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	MTE2b|LTR|ERVL-MaLR	50399.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	4.53282067005457	4.18684735595715	4.58856152291586	4.46285650982843	4.20665638258455	4.45365395245815	-0.176511125793195	0.703072127334204	0.922108924938678
Merged-chr17-71192193-4	chr17	71191674	71192674	+	942.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	L1MC3|LINE|L1	8196.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.43726511413648	5.41518762121786	5.25792759168015	5.12228538663394	5.37469474720641	5.53054387863732	-0.0592819367132371	0.866348137937756	0.96895164941496
Merged-chr16-93750680-4	chr16	93750157	93751157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357118, intron 6 of 35)	intron (NM_001357118, intron 6 of 35)	20558.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	6.3021190369109	5.89069681323121	5.41950333602277	5.8628653147438	5.75017605650111	5.15399080975617	-0.529763920756476	0.201694908552126	0.591208297840747
Merged-chr12-32693993-3	chr12	32693476	32694476	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-126359.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.43854207618435	3.15017766615067	3.1700247348036	2.97896937510441	2.92324236961974	3.29856686857812	-0.832380802072939	0.223250298597201	0.618076123752226
Merged-chr1-64867841-3	chr1	64867371	64868371	+	677.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	88953.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	3.37899295123075	3.55348115224501	3.94563710384901	3.26573794225661	3.42480605920909	3.31349640457588	-1.10239279682429	0.0813487308179919	0.377326784876719
Merged-chr17-4909267-2	chr17	4908767	4909767	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85807.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.36366174913747	3.19517245450471	3.49304437172585	3.30473602773659	3.1313998334521	3.29371546339656	-0.441834493835235	0.479800198870062	0.824391932626821
Merged-chr4-141871166-4	chr4	141870655	141871655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	3765.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.67840595555362	8.00132939151154	7.79610910815117	8.20014105169133	8.37122548071113	8.16172516636184	0.589278574842814	0.00913883117771598	0.0945683204371833
Merged-chr4-48075736-3	chr4	48075252	48076252	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	24506.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	2.60829127336022	2.72870631064879	2.68073516295863	2.92863368599241	2.53118158121846	2.81764009005752	0.49323147309688	0.52094020441448	0.846846888510977
Merged-chr13-60673163-4	chr13	60672657	60673657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70946.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.63073679999407	7.58327210103109	7.34120449512648	7.59193507080555	7.82050956300796	7.35229473540719	0.119065939893346	0.636303662346497	0.8970753299382
Merged-chr6-122598617-4	chr6	122598116	122599116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	RLTR14|LTR|ERV1	3828.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	8.05012163168037	8.00644945238738	7.6482841788424	8.19278490586895	8.57706811447903	7.89476593347778	0.481500540859549	0.0758428329627441	0.362539808419832
Merged-chr10-4431862-1	chr10	4431362	4432362	+	1000.0	f1_balb.idr	promoter-TSS (NM_024261)	promoter-TSS (NM_024261)	526.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	6.83035984485387	6.97168928356888	6.83127999103422	7.04746368501815	7.10797266854475	7.01756190241572	0.272522017904369	0.25954787166859	0.657131020381498
Merged-chr3-95511970-4	chr3	95511470	95512470	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12760.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	3.46757430516241	3.467110653559	3.08746476753833	3.12576816844967	2.95249478728887	3.65750371952306	-0.274904466634302	0.705818611874857	0.922834459892351
Merged-chr15-76538788-4	chr15	76538269	76539269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013909)	promoter-TSS (NM_013909)	-23.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	6.38627030992186	6.51106533516317	6.59252364665032	6.55291352625524	6.59788735191285	6.6994776070787	0.192785001694645	0.461891134803192	0.815107818354545
Merged-chr12-8501054-4	chr12	8500580	8501580	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	8.12496381820485	8.49026333732004	8.27754235373038	8.255367365991	8.73165188103654	8.35154320206497	0.223933814262263	0.361801544629295	0.747478680384173
Merged-chr11-68656600-3	chr11	68656113	68657113	+	749.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35302.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	6.69263112300926	6.48363266249946	6.60552609758973	6.3550052234644	6.59432357824629	6.80307703078179	-0.00777850534742979	0.977674447741174	0.994893491053568
Merged-chr1-91062581-4	chr1	91062077	91063077	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9133.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.80700714880839	4.54670206646933	4.6141551127715	5.00494117459375	5.17552972904912	4.84571939201811	0.810851061603419	0.0439384797795309	0.263737870308998
Merged-chr2-148682384-4	chr2	148681908	148682908	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	1288.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	4.86670116850698	4.96904869565041	4.82873644071976	4.9725747970703	5.09123855646178	5.14184368913854	0.378717241897207	0.310755763733651	0.706022433069834
Merged-chr1-170550254-2	chr1	170549754	170550754	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	6856.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	2.83832612345936	2.78946072638135	3.18302686500264	2.61080423179563	2.5444167337472	3.03958651286405	-0.994043415316105	0.214442371429583	0.607538973573768
Merged-chr1-135682446-4	chr1	135681942	135682942	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-37621.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.01997009777158	2.93806399454231	3.03166539944676	2.93868335552735	2.73409616755358	3.26922898396166	-0.0157009468859794	0.982597643721436	0.996052638014391
Merged-chr2-153557571-4	chr2	153557081	153558081	+	966.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27610.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.16688565183613	4.31405196574705	4.13675583092675	4.3483202466365	4.39717027874587	4.51538166405386	0.542922563526537	0.230518908252707	0.626341302534829
Merged-chr14-66868127-2	chr14	66867627	66868627	+	930.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034881)	promoter-TSS (NM_001034881)	473.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	3.62788654298573	4.04599599190139	4.02061086777838	3.80287305558892	3.99757455261794	4.1336529235236	0.2158983681848	0.688068774892519	0.917193226920892
Merged-chr2-39009263-2	chr2	39008763	39009763	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	1124.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	4.06776345162808	4.11019269367581	4.25384699350034	4.32422671514122	4.36046304728478	4.52960171866241	0.709838892695068	0.120569281780303	0.464395167262668
Merged-chr2-156540770-4	chr2	156540370	156541370	+	887.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-6706.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	5.15278019358382	4.95791510171869	5.1170201606743	5.45837225487327	5.46358419545466	5.18167839787455	0.629343388444439	0.0788517401057345	0.370955820134446
Merged-chr13-13889640-4	chr13	13889147	13890147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65027.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	3.02334854028776	2.82338964368694	3.0921071421398	3.07105430388778	3.03107485586705	2.92508774279988	0.150540637778296	0.826088148230832	0.959066912370399
Merged-chr14-103978985-4	chr14	103978453	103979453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48189.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	3.71183623462068	3.87508556942684	4.14976827286976	3.58463788316226	4.04388007310732	4.21632812776262	0.159459436210142	0.779525662625843	0.945797190664497
Merged-chr8-104630825-4	chr8	104630374	104631374	+	892.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019662, exon 2 of 5)	exon (NM_019662, exon 2 of 5)	447.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	4.29677496881955	3.97425082015771	4.1576615605923	4.30762879177529	3.99183216725336	4.48182054865693	0.319693249486945	0.522512031363142	0.847644119032093
Merged-chr13-30625335-4	chr13	30624821	30625821	+	852.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10278.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	5.39906659098585	5.37846488467553	5.48988925872986	5.5000984570688	5.74065585201658	5.86119259012544	0.538918444895152	0.102316250829249	0.426562897824884
Merged-chr4-15233890-3	chr4	15233393	15234393	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31927.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	4.46520484404365	4.85293681041313	4.04282405529748	3.8302002927658	3.67506772243225	3.77981244791403	-2.18333205232069	7.98024904416447e-05	0.0023438777354989
Merged-chr4-53158844-4	chr4	53158357	53159357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1038.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.30346555964281	8.45115132320276	8.2623771879634	8.27648551085141	8.6700381964045	7.83961775477006	-0.0357194099360676	0.895896089635165	0.975691030801969
Merged-chr7-25651454-4	chr7	25650956	25651956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	7305.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	5.96103330657749	5.81624238032364	6.12995538779057	5.7785709070063	5.97553556681204	5.72104723099684	-0.225060096886603	0.470506836325335	0.819495618343931
Merged-chr12-102367868-2	chr12	102367368	102368368	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71945.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.84552067245307	8.27050648581518	8.13925835129217	7.91725041418469	8.10878239446659	7.56261004620089	-0.292786737126363	0.260260903055862	0.657649400461384
Merged-chr9-104262397-1	chr9	104261897	104262897	+	1000.0	f0_balb.idr	intron (NM_001359740, intron 1 of 56)	CpG	533.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	7.82781679099854	8.11225976596164	8.00245299416488	8.20390774042157	8.23761760669572	7.98337275723623	0.232696058900997	0.299556024898959	0.696314831841331
Merged-chr7-126211110-4	chr7	126210612	126211612	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-10611.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	3.2287052720691	3.11580070637531	3.33675135360401	3.25285820661229	3.02750853131954	3.40721781937016	0.0195036531598397	0.975962206089768	0.994572735300192
Merged-chr2-120348794-2	chr2	120348294	120349294	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	B1_Mur2|SINE|Alu	4339.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	6.7337724123456	6.69650676836801	6.30068601676146	6.59821721672233	6.76641536127793	6.29745408535537	-0.0340674710648977	0.908765448594775	0.979318923423343
Merged-chr2-174477331-3	chr2	174476851	174477851	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4410.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	2.99053014328462	3.06071566059748	3.21457186863527	2.96159649989773	2.9963651872214	3.23069578208348	-0.110730774638818	0.868201163454414	0.969642939011354
Merged-chr7-35745348-3	chr7	35744845	35745845	+	908.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	9109.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	3.14109840548503	2.77026849490253	3.28993025000012	2.67902945237547	2.55868297717475	2.66092661811064	-2.45301222382619	0.0029347365702519	0.041437902687514
Merged-chr5-88768375-2	chr5	88767875	88768875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	3362.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	5.49609092014286	5.56501221003863	5.83864170253306	6.23046878427808	6.2862072104148	5.90058706096529	0.936187937616273	0.00320523621627559	0.0443236188442794
Merged-chr2-121408554-7	chr2	121408145	121409145	+	921.328247	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153075, intron 4 of 12)	Lx5c|LINE|L1	5147.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	4.61751979794938	4.86934337306471	4.38347477127316	4.76036563939573	4.68954006993965	4.79322407199421	0.217901562568166	0.610692992594055	0.88576458178368
Merged-chr15-101133192-4	chr15	101132688	101133688	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	4666.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	6.57102599649343	6.53286216974282	6.04011374055893	6.44131466213184	6.32816797290003	6.36347716398648	-0.0646789837878021	0.827611936489828	0.959481887246358
Merged-chr12-37241312-4	chr12	37240802	37241802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178767)	promoter-TSS (NM_178767)	-337.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	7.75282547260448	7.94188479588627	7.50534268286897	7.60142213962535	8.00273810561796	7.69862404230287	0.0468558529278961	0.853479016582164	0.965687837146459
Merged-chr7-4207324-4	chr7	4206824	4207824	+	923.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30430.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.11494212522549	3.92406235220217	4.18968343378882	4.03089572940789	4.26393833771011	4.1667033044154	0.245386962940723	0.613187993640493	0.887079412605632
Merged-chr9-59617221-4	chr9	59616721	59617721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038075)	promoter-TSS (NR_038075)	-63.0	NR_038075	67287.0	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	5.7065241666577	5.74838349832694	6.04836956160733	5.85536164401205	5.83959174013399	5.90814137434829	0.0606582722655128	0.844779831950352	0.96373428957366
Merged-chr9-47531299-7	chr9	47530718	47531718	+	914.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	CpG	866.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.14834606845034	6.14775706612226	6.06821265056863	6.0115133299844	5.54289077150947	5.71197687010035	-0.626801153914643	0.0470706012806546	0.274688820385368
Merged-chr12-100397247-1	chr12	100396747	100397747	+	659.0	f0_c57.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120638.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	4.96811569315814	4.8037084512116	4.8694176434158	5.07238944429022	4.82466655404944	4.97124818354907	0.160602558428358	0.675960203680503	0.912421384593547
Merged-chr10-80075483-4	chr10	80075005	80076005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	-66.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	7.99516394214636	7.99527261180655	7.74504609565668	8.05780863190609	8.32428073728142	8.12273011071974	0.359965746718515	0.109957722082471	0.443259712798868
Merged-chr11-3382801-4	chr11	3382287	3383287	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-11383.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	3.32229249307361	3.20592981363298	3.50735358740434	3.37302058667587	3.40058261773406	3.86484486359328	0.786906477331436	0.208558477721753	0.599519099613781
Merged-chr3-8997077-2	chr3	8996594	8997594	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	L1_Mus1|LINE|L1	7110.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.76275930589479	3.88708361038915	3.954666653623	3.92979337893263	4.12142119406487	3.82095213016803	0.325125796595442	0.528868270594405	0.850585575598857
Merged-chr19-42091096-4	chr19	42090606	42091606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	671.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	8.54659495363485	8.17651963376555	8.26474974568835	8.45715062275465	8.27191958264033	8.25704180966481	-0.0123840892048568	0.956228222739966	0.98982182968933
Merged-chr5-102009884-4	chr5	102009370	102010370	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172882, exon 3 of 67)	5' UTR (NM_172882, exon 3 of 67)	60051.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.7168249966791	6.64396168084356	6.50568780496816	6.69565598619174	6.84217817372311	6.43290933420983	0.0783043301151078	0.774504650060407	0.944477929413368
Merged-chr12-57231193-4	chr12	57230711	57231711	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	B1_Mm|SINE|Alu	786.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	6.91380760685011	7.40336730169037	6.62625547799164	7.16138279118368	7.27334522134199	6.83820655020882	0.115164253866081	0.710922068347836	0.924511716032697
Merged-chr8-11456955-2	chr8	11456455	11457455	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-20974.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.54634785316133	5.01296933600464	5.42633270613589	5.45200270809117	5.2631754547244	5.59933372298406	0.177829277781888	0.634357978464538	0.896341969659052
Merged-chr5-117360745-4	chr5	117360230	117361230	+	946.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	3425.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	5.75960361868604	5.64626590227396	5.49908893210593	5.60762952372277	5.34771478903631	5.27640206928635	-0.424640419869523	0.209929783665149	0.601861883306677
Merged-chr9-118611316-4	chr9	118610801	118611801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4592.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.74867277582273	7.55186804699093	7.5229502381851	7.66465029138313	7.6379421342745	7.42279046589546	-0.0437040291998333	0.85039848369903	0.964899733161001
Merged-chr13-43398403-4	chr13	43397936	43398936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023554)	promoter-TSS (NM_023554)	60.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	6.40042410317468	6.50907424614552	6.48711676123678	6.66822110809699	6.50905053195742	6.20947873731192	0.031490810533009	0.910808878206302	0.979969158480567
Merged-chr12-78299356-4	chr12	78298905	78299905	+	978.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	L1_Mur1|LINE|L1	72750.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.58330395224395	4.20305505193289	4.69791017114355	5.31972283244354	4.83754518401861	4.55333179531749	1.01518949471281	0.0321214542719352	0.217632745575798
Merged-chr8-94602635-3	chr8	94602211	94603211	+	994.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028221)	promoter-TSS (NM_028221)	770.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	7.00073481290123	7.1765725224988	7.19377287245375	7.41059132488326	7.43450511634224	7.36529848457579	0.41982728581011	0.0706167158214935	0.348355966669458
Merged-chr2-101782172-1	chr2	101781672	101782672	+	573.0	f0_balb.idr	intron (NM_001355625, intron 1 of 8)	MTD|LTR|ERVL-MaLR	15535.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.63782716842672	6.37504400039211	6.4862786448426	6.67519958840251	6.97977269094131	6.66721062552628	0.452990126065891	0.0978860413726753	0.417248724505521
Merged-chr9-64737714-4	chr9	64737223	64738223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	33.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	8.53368041786908	8.915883981549	8.5403918750643	8.53410751222652	8.76498323814213	8.60608097492239	-0.0541973003926771	0.811107020669882	0.955118634851824
Merged-chr17-27820717-4	chr17	27820217	27821217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-175.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	8.01463438871731	7.88104471643986	7.53809140777456	7.95368218759218	8.18871326778484	7.70344292984887	0.196232805606787	0.44849250921868	0.80725470300829
Merged-chr6-108331420-3	chr6	108330926	108331926	+	773.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	118330.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.27927000949285	4.57955389658934	4.27115242150585	3.79082659156561	3.66776882008578	3.67277040634773	-2.07214549968101	8.82456015718135e-05	0.00255563067152403
Merged-chr11-58904233-4	chr11	58903749	58904749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-24.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	7.2054919334135	7.57535746206642	6.91525507742018	7.07110899611126	7.22286893053019	6.92893198963869	-0.277865622200102	0.326013814860403	0.718480705236371
Merged-chr8-70376586-6	chr8	70376115	70377115	+	839.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 8 of 18)	CpG-14088	3067.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	3.59265605042743	3.38040492176863	3.39319396793044	3.66033729527206	3.39977380209426	3.22294065837186	-0.0644157219773609	0.917305959076784	0.981588017376699
Merged-chr19-4395014-2	chr19	4394514	4395514	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 1 of 20)	intron (NM_001001984, intron 1 of 20)	2063.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	5.00588970191134	4.47200346541516	4.93376063735067	4.72062771476847	5.04528378971147	4.89101626253905	0.167727641185191	0.695498032691663	0.919289041383579
Merged-chr8-36238257-4	chr8	36237774	36238774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	11242.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	3.80946292420407	3.52157509816037	3.41507807365477	3.51049365275342	3.25492923895231	3.30887361862866	-0.880027550960828	0.152879958834717	0.521355567452332
Merged-chr8-56550730-4	chr8	56550253	56551253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015791)	promoter-TSS (NM_015791)	-187.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	7.2675901714082	7.60239364656471	7.08683056939261	7.65327421501955	7.82197967446595	7.3806687322049	0.427470577441183	0.112765445259539	0.448538991785253
Merged-chr18-30272809-4	chr18	30272308	30273308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181414)	promoter-TSS (NM_181414)	-57.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.95762834914192	4.8397629609535	5.17431994077278	4.79463425451542	4.9777670159083	4.82504465995862	-0.248735839066211	0.524270036144558	0.848650426908011
Merged-chr2-152670487-2	chr2	152669987	152670987	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	RSINE1|SINE|B4	1026.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	4.8767526986128	5.17958261353997	4.93760015544967	5.1775236855688	4.79897353834078	5.23839463877645	0.139921903654371	0.725102528335203	0.929507490027971
Merged-chr13-17780126-4	chr13	17779612	17780612	+	718.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	24985.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	2.83959013872917	2.84373170377119	2.83981919941715	2.66572183155334	2.70870377886337	2.66353832976726	-0.857885173040242	0.241232468308504	1
Merged-chr8-119437053-4	chr8	119436547	119437547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-115.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	8.05334246157068	8.14590433084633	7.99486300019295	8.11399324378698	8.33838127136829	8.14379313542206	0.194251424865778	0.364670290127356	0.750028369485675
Merged-chr7-25848195-4	chr7	25847689	25848689	+	949.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31659.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	3.2438947786443	3.61601599033722	3.65491010452932	3.72672967042076	3.46514865176399	3.72466113172539	0.439689439448839	0.464476878917495	0.816423299200476
Merged-chr9-88705474-4	chr9	88705001	88706001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	14086.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	5.82477908133464	5.69066468416967	5.37525351767887	5.56998237500752	5.47538648473978	5.16170824631637	-0.434502136887163	0.223091690581608	0.617935983824703
Merged-chr1-65185769-4	chr1	65185280	65186280	+	743.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011086)	promoter-TSS (NM_011086)	699.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	7.71560717308813	8.31082788057991	7.22727900059425	7.62584777034241	8.18152426307549	7.24552873260712	-0.123659558786799	0.832440292324592	0.960616839788396
Merged-chr6-5362212-4	chr6	5361711	5362711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21175.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	5.31117742749606	5.05707446369634	5.43205983038105	5.46702748900216	5.36739083652497	5.40719942775941	0.290517117721951	0.406956505953254	0.781149206379808
Merged-chr5-143056269-2	chr5	143055769	143056769	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56751.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.28597393838983	6.24185679592126	6.65125418595133	6.08194577044124	6.23185318397158	6.63367595789599	-0.113652739259592	0.717453603107732	0.927077249271794
Merged-chr14-31569376-4	chr14	31568901	31569901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	7982.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	4.60475463333393	4.32458126915441	4.04439406568011	4.49126264725037	4.92833050158342	4.59774997329022	0.827120925670779	0.0896975980922447	0.397971512320545
Merged-chr17-5840231-2	chr17	5839731	5840731	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1149.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	5.18685324876554	5.54895484866809	5.70308087926723	5.39356008722896	5.52420511715242	5.41016224736945	-0.0789100228299509	0.823859059092316	0.958451755471188
Merged-chr8-115711343-4	chr8	115710841	115711841	+	910.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4447.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.58634831085858	6.05792645044035	5.69800622009124	6.07366542147699	5.98302335062084	5.7877416723338	0.27134551122577	0.410017167314176	0.783086015972593
Merged-chr19-5703325-2	chr19	5702825	5703825	+	694.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022012)	TTS (NM_022012)	-1146.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	2.66303824494327	2.55020849478294	3.06112069087165	2.79189549710842	2.43926779754585	2.96757999733854	-0.118078028119502	0.88695005887246	0.973794308941933
Merged-chr13-60488404-3	chr13	60487905	60488905	+	723.600037	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113542.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.91624202206142	2.76374948606668	2.80727508762305	3.25805524404676	3.43689854534812	3.57965084177204	2.84810451674296	0.000166303234979515	0.00431486110887916
Merged-chr10-128526054-4	chr10	128525550	128526550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-191.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	8.06940438359567	8.24192854427541	7.9366525901352	8.07665009102533	8.32576451503364	7.88796889216176	0.0341378766670583	0.886199272824973	0.97374292322368
Merged-chr2-13574083-9	chr2	13573624	13574624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011701)	promoter-TSS (NM_011701)	-187.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	7.16673897291653	7.10296487181294	6.90108017152321	6.92975443332694	7.06801039930724	7.04247238565483	-0.0810854368703055	0.741131328159774	0.934742147011145
Merged-chr16-38346969-4	chr16	38346479	38347479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-20.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	7.42910193204793	7.58031741426975	7.46751725840338	7.66519448060538	7.80941632460216	7.5038155483522	0.257757540962261	0.264381871247136	0.662276944757498
Merged-chr15-6284766-3	chr15	6284268	6285268	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.08751232615016	4.10185454821237	3.94900221646531	3.86605528172263	4.01785666703	3.81049696373629	-0.432509107526785	0.392517307031114	0.771172125304963
Merged-chr1-156024639-2	chr1	156024160	156025160	+	861.0	f0_balb.idr|f1_balb.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	10157.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.39770853605823	6.25517642358542	5.99403043059179	5.84627695881192	5.73836758937848	5.85942797062797	-0.735559783166662	0.0149647159401889	0.132494582246354
Merged-chr3-104672236-3	chr3	104671745	104672745	+	865.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33581.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	2.34270364117622	2.30002036239216	2.43940980835931	1.99894842680557	2.13704749033159	2.12370692865958	-2.06888767094988	0.0332945548643934	1
Merged-chr10-95682545-4	chr10	95682040	95683040	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118394.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	3.27104645593312	2.91154281043578	2.71484061326367	2.83591471568302	2.77278688394195	2.98332141853559	-0.603841177677653	0.426587888929007	0.793840707522572
Merged-chr7-119720291-1	chr7	119719791	119720791	+	848.0	f0_balb.idr	intron (NM_145585, intron 2 of 4)	CpG	3328.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	6.15031229155453	6.25438195642743	6.09718388795433	6.05832504099777	5.91107832100872	5.82189455836963	-0.404683118687383	0.165826395087152	0.540995204172191
Merged-chr8-111538370-4	chr8	111537867	111538867	+	981.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168623)	promoter-TSS (NM_001168623)	24.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	3.44593086238777	3.42426266469143	3.2617343231971	3.1190748602508	3.12025188695567	3.2759116988232	-0.90438099754782	0.149974872291113	0.516609804764046
Merged-chr11-106819124-3	chr11	106818628	106819628	+	687.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025481)	TTS (NM_025481)	29876.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	7.43841388307153	7.50039508283624	6.69094113079692	6.46291237449058	6.85956965013092	6.15009562940803	-1.11782853240483	0.00132596125817953	0.0224771411566475
Merged-chr19-37178029-4	chr19	37177494	37178494	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-1931.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	5.29460174240602	5.35768159383101	5.06097986994184	5.89372402405946	5.9548985828439	5.20510984566449	0.922559004371676	0.0171558480010314	0.145760557140357
Merged-chr11-44538901-4	chr11	44538303	44539303	+	878.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	C-rich|Low_complexity|Low_complexity	19426.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.91653843357706	6.04471953285116	6.18449906843279	6.21366306663603	6.34145420005468	6.48650235289401	0.507622759568489	0.0778975857804351	0.368529811099525
Merged-chr5-123586010-4	chr5	123585477	123586477	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359223)	TTS (NM_001359223)	-12962.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	4.34898851498463	4.35580237532488	4.3309953584206	4.35426408739263	4.10421271981729	4.44085233930553	-0.13037733373005	0.775482983757114	0.944682505926692
Merged-chr16-30790743-2	chr16	30790243	30791243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191020.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.08911333422139	5.73634664969059	6.43692842135006	5.78273793304987	5.97015485884457	6.14820958449316	-0.236274720699153	0.48845601009833	0.829219705665341
Merged-chr9-111577651-4	chr9	111577144	111578144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 8 of 10)	intron (NM_016853, intron 8 of 10)	112704.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	2.70681739246335	3.06545331784223	2.98296317505544	2.73880047258445	2.65206794790418	2.62026832928542	-1.34240635708308	0.0804918251909565	0.375478544798365
Merged-chr11-54885091-4	chr11	54884611	54885611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17743.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	7.81417371254402	8.20578914400335	8.1030861967052	8.01932725285118	8.10835438865411	7.90871612543975	-0.0470479205016014	0.838697418109884	0.96255643337768
Merged-chr15-100040896-4	chr15	100040397	100041397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	2233.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	7.64290443216091	7.72406897732325	7.66261215229297	7.60974686377156	8.04834645776252	7.52520758295701	0.11864764819615	0.637221949511305	0.897338937840938
Merged-chr11-34012180-4	chr11	34011664	34012664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18971.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	7.29212271408948	6.80511530098073	7.25542732944544	7.18729691701363	7.05521912295894	7.08436514647971	-0.0343934465078933	0.897168734113778	0.975955240159241
Merged-chr19-6975817-2	chr19	6975317	6976317	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	769.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	4.87904567813154	4.825375242671	5.25753995796613	4.76218796417168	4.56057583114442	4.94405190305709	-0.529543455062972	0.202955904322605	0.592804308646864
Merged-chr1-131091029-4	chr1	131090515	131091515	+	885.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6828.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.74748627591182	6.59552341712036	6.12346964130198	6.45235141828417	6.32039456019918	6.20755039442436	-0.315615900618867	0.30126239318318	0.697953538576553
Merged-chr15-4026119-2	chr15	4025619	4026619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024188)	promoter-TSS (NM_024188)	-309.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	7.26399360244973	7.41158599607392	7.19178199896365	7.22503611860748	7.51017025355781	7.14888389760658	0.0254340949795239	0.918646896168375	0.981830247255695
Merged-chr19-5849317-4	chr19	5848822	5849822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3842.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	8.21724021109676	8.2476968682183	8.03134941044736	8.1221069399445	8.34785333889004	7.82171058381102	-0.0675610848232824	0.779447637921605	0.94575768572359
Merged-chr19-17163647-4	chr19	17163133	17164133	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175872.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.87445560858781	3.84399513879681	3.93030766351246	3.68040635296895	3.7535799100524	3.80181230476903	-0.439868943548721	0.396823560975264	0.773765492504153
Merged-chr15-7878242-4	chr15	7877739	7878739	+	893.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	62689.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	4.03658814400259	4.25738723948506	3.89116303084552	3.60198664458386	3.45759254324575	3.69759292460499	-1.64664501606477	0.00292624108558379	0.0413600591556406
Merged-chr17-83350809-4	chr17	83350305	83351305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286567)	promoter-TSS (NM_001286567)	-126.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	7.62233724865062	7.50464847544856	7.52056455021629	7.60578763891701	7.57033908750525	7.33105558414887	-0.0538586853041915	0.814912107752722	0.956370078970016
Merged-chr4-19898206-4	chr4	19897715	19898715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	24351.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	6.077319199015	6.22380176537317	6.08324911944882	6.01358939789142	6.27487944663457	6.00658615502758	-0.0308366784983607	0.916347247730982	0.981243905880233
Merged-chr3-136235722-4	chr3	136235185	136236185	+	863.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 5 of 16)	Lx8b|LINE|L1	90381.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.95439839189801	3.63755517562368	3.87086122006442	3.89690296614975	3.74412943220276	4.0806869404772	0.25036974159823	0.640240044791739	0.898404369829977
Merged-chr10-17720398-2	chr10	17719898	17720898	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2830.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.11882003260084	3.03600487817485	3.30542673298797	2.76501741609935	2.94692874829773	2.87028118072557	-1.38837618231553	0.0531303461598888	0.295408948691152
Merged-chr2-173768920-1	chr2	173768420	173769420	+	600.0	f0_balb.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31349.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.63932944855908	5.75143126603003	5.83863491442793	5.9083659819808	5.8092260851161	6.05753777622978	0.324067377378726	0.291899697418964	0.689235268138963
Merged-chr1-159187025-4	chr1	159186528	159187528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45172.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	6.08494836969255	6.3398561069251	6.2053600309987	5.56544806381271	5.87592200325664	6.30355991976624	-0.469747537609981	0.163397427680881	0.537242865848567
Merged-chr11-51263044-4	chr11	51262528	51263528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	29.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	8.90188125834575	9.40066026303696	8.77705711218664	8.77746787936622	9.01777969253063	8.63136495090522	-0.326270586639104	0.203313073478696	0.593172307784548
Merged-chr2-109932358-3	chr2	109931844	109932844	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	14697.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	2.8150466753082	2.89757896097439	2.86349944474331	2.85046831081452	3.00833799723006	3.16809744901413	0.726771697279881	0.29722422071208	0.69386498175224
Merged-chr17-6795224-3	chr17	6794778	6795778	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-12498.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.97080302757607	5.48843442818463	5.47026897149946	5.94840607983107	5.79260727162862	5.53448917461978	0.185189744186328	0.601335690891914	0.881933867638998
Merged-chr19-43512251-4	chr19	43511747	43512747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	B3|SINE|B2	12358.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	8.43692039809811	8.7615886101511	8.12635787970166	8.12585471583442	8.47575286257474	7.6246261621369	-0.475635109744106	0.115204140941114	0.4530629624458
Merged-chr3-129829643-2	chr3	129829143	129830143	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026578, intron 2 of 6)	intron (NM_026578, intron 2 of 6)	1753.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	2.33342208873959	2.46939009189968	2.40056534998322	2.51396841516631	2.4742810414355	2.60263012410329	0.769777253749253	0.337560867715247	1
Merged-chr5-105700631-4	chr5	105700121	105701121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-189.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	8.36916350115922	8.25811856559948	7.92501648379984	7.96179642541992	7.85591309590864	7.8068615467713	-0.462721509083027	0.0463891608454417	0.272537548233249
Merged-chr12-81971976-4	chr12	81971473	81972473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 20 of 35)	intron (NM_018814, intron 20 of 35)	111943.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	7.34518177276696	7.97998172471116	7.6033329813641	7.35646776552347	7.53577159834065	7.30505774967684	-0.389513000353421	0.149506935526561	0.515961080764456
Merged-chr14-118691094-4	chr14	118690578	118691578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-14147.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.94179927329171	4.98581757900132	5.26339559554627	5.50039087074443	5.66536544197935	5.85634182590985	1.21611958435359	0.000597563646288436	0.0121096141939523
Merged-chr19-3999391-3	chr19	3998874	3999874	+	804.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011533, exon 8 of 8)	3' UTR (NM_011533, exon 8 of 8)	-1206.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	4.48055499191827	4.3532421185848	4.47306159861093	3.95671409410375	4.27660772333957	4.19026959170744	-0.755564598649545	0.108143367105576	0.439299334771121
Merged-chr7-114292711-4	chr7	114292200	114293200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16584.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	6.88107948523706	7.06503401080868	7.03726048496566	7.24191187293233	7.79297810353293	7.51615487473721	0.813880730001888	0.0020228234157551	0.0312214970836858
Merged-chr3-27449609-4	chr3	27449094	27450094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	78243.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	4.64012444987261	4.73517945755858	4.74417497365054	4.77845328311849	4.36523431220504	4.29236043182216	-0.495667975104479	0.263705222026083	0.661672520184135
Merged-chr7-31155987-4	chr7	31155498	31156498	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4827.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	6.56477114254668	6.87602863354353	7.03512820400684	7.02495849271644	6.90802420104462	6.737580099875	0.103101965335386	0.705907611612308	0.922834459892351
Merged-chr2-154792655-1	chr2	154792155	154793155	+	1000.0	f1_balb.idr	intron (NM_001139513, intron 1 of 8)	intron (NM_001139513, intron 1 of 8)	1545.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	3.82219664391178	3.8672442016156	3.78136140084554	3.90878410013358	3.96056432803736	3.95265324014743	0.357666205648903	0.479471788000804	0.82426854740066
Merged-chr7-19343639-4	chr7	19343135	19344135	+	893.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1436.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	2.91999901409178	3.2306887070703	3.05374285033018	3.31831781795798	3.22344996032826	3.24598279442107	0.786417484715048	0.233963501187882	0.630204104976897
Merged-chr12-24595516-3	chr12	24595017	24596017	+	715.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	MTC|LTR|ERVL-MaLR	14798.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	2.25475878288367	2.34150347724125	2.3937710981532	2.17669979862975	2.05472228511017	2.20865987312383	-1.36682198053852	0.128191618933311	1
Merged-chr11-48817919-2	chr11	48817419	48818419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145377)	promoter-TSS (NM_145377)	-528.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	7.67129925589865	7.70270884442089	7.30103453060385	7.68516608116006	8.03069248813512	7.45029475070354	0.254543161235299	0.346094942323851	0.734515828466387
Merged-chr12-85389265-4	chr12	85388752	85389752	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14535.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.05306479710968	6.311460367109	6.41482340824847	6.29677323945042	6.45125363707174	5.96816718264551	0.00722383974172722	0.981269847945031	0.995690081075595
Merged-chr11-4094563-4	chr11	4094061	4095061	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026443, intron 1 of 3)	intron (NM_026443, intron 1 of 3)	870.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	4.05404197325591	4.16003574441236	3.98316796927774	4.36811045436181	4.14153994798791	3.83766372568482	0.195890239513254	0.701514155622168	0.921353558219906
Merged-chr6-58735286-4	chr6	58734788	58735788	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96177.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	2.90920530169953	2.80272927451248	2.82389935919351	2.49705039703004	2.83538871761842	2.57758324282584	-1.02633919146881	0.204711158575604	1
Merged-chr2-36135712-2	chr2	36135212	36136212	+	790.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026422)	promoter-TSS (NM_026422)	-686.0	NM_026422	67871.0	Mm.378232	NM_026422	ENSMUSG00000026887	Mrrf	2400002D02Rik|MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding	5.77320788976271	6.00178977838845	5.74186297351891	6.21174096856851	6.16213639134843	5.50562597676931	0.283009504464905	0.418767632078172	0.788755230826602
Merged-chr7-16259274-4	chr7	16258727	16259727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007577, exon 2 of 3)	5' UTR (NM_007577, exon 2 of 3)	111.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	6.86684185336228	6.97154376772041	7.35908205364483	6.71359019813081	6.80932725015403	7.08316202051968	-0.310934737119061	0.265413183239834	0.663118548853595
Merged-chr13-94382241-4	chr13	94381749	94382749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23289.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	6.87103347118347	7.05994941513911	6.86292740258767	7.09207982710108	7.4625269008548	6.96540059293588	0.400491436019733	0.136211711691016	0.493146752362964
Merged-chr11-121848076-4	chr11	121847548	121848548	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17830.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	3.32383408061668	3.13052549906455	3.05413754250182	3.13921804390082	3.45387293504801	3.36384544747069	0.606124113972455	0.353240559822183	0.740562010982123
Merged-chr7-118702249-3	chr7	118701739	118702739	+	789.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	B1_Mur1|SINE|Alu	3499.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	4.18802457756705	4.32164644796396	4.23777066873463	4.60919305937326	4.45625484368652	4.52672037050999	0.719351632064323	0.10247315935234	0.426970738685715
Merged-chr12-110436914-4	chr12	110436417	110437417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10262.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	5.4898363656236	5.55035371229469	5.78781683613299	5.8809558742818	5.55059449445158	5.23476708606571	-0.0328626221601349	0.927470896924805	0.983584626679457
Merged-chr8-120094887-2	chr8	120094387	120095387	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133967, intron 1 of 7)	intron (NM_133967, intron 1 of 7)	6585.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	3.27199884078856	3.18696287606509	3.1839495717186	3.07807364786428	2.9739135011293	2.95528738508396	-0.961362718454482	0.145576949237351	0.508750422332281
Merged-chr17-30010001-1	chr17	30009501	30010501	+	598.0	f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	Lx8|LINE|L1	4962.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.9096571771973	4.64913774517978	4.60731366895809	4.89230354753493	4.61106573769654	4.83345909169591	0.0993986515144254	0.810211806338386	0.954977386600301
Merged-chr18-80392197-3	chr18	80391735	80392735	+	864.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27981.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.59267960421646	4.47753603120905	4.27300935288111	3.83562130615241	3.84421685357641	4.00385025674915	-1.64205986633247	0.000816952395458305	0.0153898516914862
Merged-chr10-80589547-3	chr10	80589029	80590029	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 1 of 4)	RSINE1|SINE|B4	812.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	5.32462955759472	5.53022215042026	5.3298242445256	5.42728834967406	5.64542736117033	5.67860458260159	0.352196670713961	0.294859643761135	0.691747281751485
Merged-chr10-94558032-2	chr10	94557532	94558532	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	7112.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.20866139776724	3.26290670930334	3.54985276666069	3.26370238604635	2.91787212753564	3.25022473130223	-0.808724161261897	0.227892232504662	0.622981752321771
Merged-chr6-38975037-4	chr6	38974529	38975529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	56043.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.8064199358405	5.85659690659902	6.25766253355885	6.28193558073349	6.16611249181512	6.19916415677527	0.411485057727978	0.176941460416666	0.557594294017865
Merged-chr5-140621227-2	chr5	140620727	140621727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	13886.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	2.90886311507259	2.83116363336314	2.94536490825128	3.13552880845062	2.72168249002364	2.76699291543788	-0.0249235911520383	0.972857479243595	0.993897323428832
Merged-chr1-170854387-3	chr1	170853879	170854879	+	783.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 2 of 15)	RMER17A|LTR|ERVK	13392.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	7.04979487623737	6.82761196664132	7.16850655237053	6.78480653951043	7.00925697281797	7.13093110046544	-0.0566568301238263	0.828599767607413	0.959833682782168
Merged-chr18-73814754-3	chr18	73814206	73815206	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	686.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	5.9524577176547	6.04335059765144	6.036333630919	6.85761712086049	6.70771792343893	5.99984297571129	0.945104499296102	0.00444232618983529	0.0563148251566946
Merged-chr10-60350584-4	chr10	60350018	60351018	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3667.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	7.33047248009029	7.34035401045463	6.80177103360792	7.66057932925442	7.78081161347598	7.23583869759599	0.582017536218943	0.0432559180006552	0.261173965967529
Merged-chr7-16885362-7	chr7	16884826	16885826	+	979.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081655, exon 4 of 4)	exon (NM_001081655, exon 4 of 4)	-6460.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	3.61640905741563	3.52363867450298	3.57918067889354	3.6354981104793	3.18865160221773	3.70095974475856	-0.185353012737205	0.762538016061393	0.941579307874579
Merged-chr17-12781014-2	chr17	12780514	12781514	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	L1MD1|LINE|L1	-11308.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	2.67222040962606	2.56612867006037	2.67360140511293	2.71413920537838	2.69176604316471	2.92673920145464	0.754345449790007	0.31130611782285	0.706465219571547
Merged-chr4-58553309-4	chr4	58552819	58553819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172989)	promoter-TSS (NM_172989)	-26.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.69718186439995	4.37211042666342	4.29577634453848	5.03884804731644	4.36890524015015	4.10451738327994	0.245249566648933	0.645874928697638	0.900773709682429
Merged-chr7-16286347-4	chr7	16285840	16286840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136471, intron 1 of 13)	CpG	455.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	7.97656096239599	7.77577103342053	7.7785149430569	7.80678633703759	7.64260340199601	7.62844116910957	-0.220660966896318	0.323477301059631	0.716706144762875
Merged-chr14-51087891-3	chr14	51087387	51088387	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3190.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	5.13860265119879	5.13606646585204	4.37015542702144	4.53363143512051	4.55170834645163	4.28712535582205	-1.09059684161078	0.023885499931734	0.181669531839097
Merged-chr5-139389310-2	chr5	139388810	139389810	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-594.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.81733280238065	6.17706842835233	6.15766984950598	5.67929024220394	5.63475459201751	5.76405550258761	-0.656054890058792	0.0366661307957539	0.235675786533803
Merged-chr9-83441163-4	chr9	83440654	83441654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027448)	promoter-TSS (NM_027448)	-27.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	3.14554492998319	2.85091967222408	3.1299081322882	3.18637583821371	2.77194383129563	3.14493273431823	-0.0128653455959571	0.985702839120487	0.996933133810519
Merged-chr11-46438696-2	chr11	46438196	46439196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001104556, intron 1 of 1)	intron (NM_001104556, intron 1 of 1)	1735.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	2.51685625090518	2.73172558322259	2.8061204666975	2.75349589451953	2.44693743909019	2.6332531662923	-0.402476611222985	0.610398423873348	1
Merged-chr12-84706701-1	chr12	84706201	84707201	+	547.0	f0_balb.idr	Intergenic	Intergenic	-7894.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	2.26711693657384	2.09354980786626	2.06989643016724	2.4222830579445	2.24742300665375	2.41840328768849	1.49522731217145	0.103829274073742	1
Merged-chr4-32163025-1	chr4	32162525	32163525	+	862.0	f0_balb.idr	Intergenic	Intergenic	198918.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	2.68356603927868	2.90549439110179	2.77570522755177	3.0426130836858	2.94273860403905	3.09214808318179	1.12543738827358	0.11584237910197	0.454413194433185
Merged-chr10-24641931-4	chr10	24641441	24642441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 25 of 25)	exon (NM_008813, exon 25 of 25)	46499.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	7.62013098246277	7.70982868513031	7.51081113045532	7.74479592646745	7.73973522882375	7.36169848756932	0.0231606311810794	0.923307614135462	0.982699256056545
Merged-chr16-55747371-4	chr16	55746880	55747880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74758.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.31344377398991	6.36825669072994	6.2016169809085	6.18080407864273	6.68417408871841	6.54710883248123	0.313596895990778	0.286364719203696	0.68363782585898
Merged-chr1-164652441-4	chr1	164651939	164652939	+	836.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-144224.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	3.53216970429505	3.54223133735685	3.90152470582003	3.92628769401924	4.25377141577263	4.28395189565463	1.58780069168088	0.00366936027700072	0.0488151702639211
Merged-chr9-56272473-4	chr9	56271973	56272973	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-111403.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.73165461823959	3.90686533456643	3.81338104471806	3.84239838494969	3.58630636158763	3.83254717076901	-0.22160434818165	0.679311485718312	0.913702054438388
Merged-chr6-16842693-3	chr6	16842192	16843192	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 4 of 6)	intron (NM_031198, intron 4 of 6)	55749.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.99238527518666	4.26173228987432	4.08572410549393	3.97544333137429	3.91082211470234	3.95956149906921	-0.514500692649891	0.297849685512512	0.694682044851583
Merged-chr17-78362152-2	chr17	78361652	78362652	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	56000.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.9219477086567	5.95920766459429	5.64657099925667	5.66513024649842	5.59842106919079	5.76289250764102	-0.342690330754687	0.27721761357867	0.674441896764095
Merged-chr19-46478950-4	chr19	46478447	46479447	+	971.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-22701.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.9241053037899	6.06775562970659	6.28392116030666	5.69653292311642	5.50820595553999	5.50302956223837	-0.930296585728621	0.00345965067043142	0.0468278188734838
Merged-chr2-18891916-2	chr2	18891416	18892416	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-90098.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	4.25564842096732	4.16828543745965	3.82683235401036	3.93299920521365	4.14325709401884	3.78656237988334	-0.383569965608821	0.472351993481599	0.820550293768681
Merged-chr2-92375371-4	chr2	92374860	92375860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145122, exon 1 of 11)	5' UTR (NM_145122, exon 1 of 11)	121.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	6.39691367461806	6.62589066265652	6.5857606197799	6.43470247278665	6.70881776616296	6.48807967408845	0.0298476351909113	0.912978827721528	0.980521208172103
Merged-chr11-85520385-2	chr11	85519885	85520885	+	651.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	167221.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	4.96041821385582	5.07568717701533	4.47513844511738	4.18288588846796	4.18431796558472	3.97767137910544	-1.89045779860882	0.000107419662475101	0.00301151458060249
Merged-chr11-75571409-4	chr11	75570924	75571924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 12 of 13)	intron (NM_001199284, intron 12 of 13)	-16655.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	6.41803009022234	5.96332532296924	6.11900299737747	6.43948007591334	6.74707388711938	6.38795583016695	0.58822168291494	0.0534911185383776	0.296548003953716
Merged-chr4-46087132-4	chr4	46086663	46087663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	47941.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	5.41487886859065	6.03645496258012	6.34198383778304	5.51188641420331	5.44231078066617	6.09028292703607	-0.485916069153278	0.233818960262892	0.630121355137759
Merged-chr14-25482026-2	chr14	25481526	25482526	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	B4A|SINE|B4	22841.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.95358912487977	6.9503448337267	6.99572406345938	6.55054912762637	6.74138056426369	6.72251332140864	-0.450713360659532	0.0706425764730839	0.348409388095254
Merged-chr8-105607960-4	chr8	105607461	105608461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	2732.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	5.00208283126087	4.71958177824656	5.20269389708426	4.81651965658201	4.58506835876113	5.20594886234806	-0.218572488182835	0.614366828879941	0.887435546271868
Merged-chr11-57518584-4	chr11	57518061	57519061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	83.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	6.50246900172898	6.58425321442831	6.96090317658755	7.07143806722364	6.76814396425987	6.68358793015537	0.262728860141045	0.358347713363183	0.74463443132442
Merged-chr14-33215849-2	chr14	33215349	33216349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-974.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.39593004345829	5.43984004017342	5.8482948323217	5.19006630246092	4.65773737729487	5.05764118304347	-1.19000545592715	0.00284644814709725	0.0404521361953318
Merged-chr6-121224084-4	chr6	121223588	121224588	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13354.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	4.1664357785249	4.50927900313089	4.27028794457702	4.537543647575	4.5123971508517	4.6370189126505	0.58354831171354	0.192635687161211	0.579638651494757
Merged-chr10-80590407-4	chr10	80589904	80590904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-63.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	6.00109390500062	5.6271775253825	6.00782519815291	6.04306706086134	5.91661661270892	6.090176760585	0.226002168587751	0.469820630933357	0.819126978705139
Merged-chr10-62980250-4	chr10	62979761	62980761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027425)	promoter-TSS (NM_027425)	38.0	NM_027425	70432.0	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	5.87905197513468	5.80583892399324	5.76987854434245	5.41549948479878	5.17769766594079	5.50965605062158	-0.864995974811607	0.00844329520949525	0.0894708146925061
Merged-chr10-20916607-4	chr10	20916107	20917107	+	836.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35940.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.45578948406466	3.25700148190655	3.54234272537772	3.27288189959897	3.40892960255946	3.6117028919363	0.0549998305127709	0.927858327589094	0.983740101474131
Merged-chr3-31102750-2	chr3	31102250	31103250	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	7692.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	4.38701452185927	4.28171391294018	4.82202251368057	4.79467173009694	4.81478425075557	4.85129117967074	0.753862732859352	0.083580199078643	0.382643643701502
Merged-chr17-56005888-4	chr17	56005390	56006390	+	778.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	-284.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	2.82793454734366	2.56965335165651	2.73303537254914	2.50483776453573	2.39923733727202	2.74574670943205	-0.927953226889578	0.249964285349882	1
Merged-chr5-64241136-3	chr5	64240622	64241622	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	10765.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.67969656621432	7.66350002114175	7.52177544820758	7.3385380797046	7.57143828907816	7.40156750904649	-0.26467886530583	0.248856767450873	0.645843447218383
Merged-chr11-46848444-6	chr11	46847997	46848997	+	832.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37698.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.28180575800452	5.54693544172047	5.55527263973629	5.05156396712895	4.77944445260126	5.10941395034106	-1.00127937194742	0.00678945702976396	0.0764254789681547
Merged-chr14-30652180-2	chr14	30651680	30652680	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	1.82948372224948	1.88610439492652	1.81113080470545	2.03827455275296	2.05880343594736	2.16243939196046	2.09764075302678	0.0404939925592002	1
Merged-chr1-171851719-4	chr1	171851224	171852224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	12027.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.66438122426995	6.76500499498958	6.57364830156971	6.85905968807819	7.12159003655138	6.87403508592458	0.448561524089764	0.0824325492240287	0.379666088554908
Merged-chr6-29217857-4	chr6	29217370	29218370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1506.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	5.44090380712765	5.61106393824553	5.73859953626546	5.42780581973249	5.65685658765886	5.31627698018374	-0.204763129787426	0.549669802369921	0.860422089436068
Merged-chr8-70646580-2	chr8	70646080	70647080	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	13158.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	6.46493863958154	6.18157285329012	5.54461014640449	7.313996992312	7.39106464072482	6.59470446657338	1.62599969681723	0.0122517049714092	0.115909385760647
Merged-chr5-96794446-4	chr5	96793942	96794942	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 1 of 12)	intron (NM_013470, intron 1 of 12)	1057.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.10516414188425	4.94077536365118	5.54955651315854	5.23265331751547	5.3112292746582	5.1805070929131	0.0738302080865631	0.848382843507535	0.964356989789491
Merged-chr4-8537456-2	chr4	8536956	8537956	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	1812.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	3.75437762109437	3.76522931004401	3.9976770554528	4.0544639943694	3.70420838573155	4.15518856208895	0.429261074109378	0.423640922588101	0.792082736807957
Merged-chr13-55317411-2	chr13	55316911	55317911	+	622.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008739, exon 23 of 23)	3' UTR (NM_008739, exon 23 of 23)	4569.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	3.47801472475691	3.21297421561643	3.74291372165936	3.32374287037639	3.59914048492484	3.61557267988599	0.109991936278069	0.860155130284642	0.967441103100897
Merged-chr4-133886408-2	chr4	133885947	133886947	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 1 of 21)	intron (NM_009097, intron 1 of 21)	1350.0	NM_001285505	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.0587812368757	4.14905058161143	3.78400004254269	3.35839572059906	3.24304050716858	3.46367170700088	-2.47181865925216	5.19114640086524e-05	0.00163244485912016
Merged-chr1-171240162-2	chr1	171239660	171240660	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153064, intron 3 of 12)	intron (NM_153064, intron 3 of 12)	-5811.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	3.12899536766257	3.01798694196085	3.1924906387427	3.27879410516287	3.47139080452258	3.48536437934352	1.26256078925122	0.0456696736238818	0.269892201910225
Merged-chr4-141538854-4	chr4	141538351	141539351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019763)	promoter-TSS (NM_019763)	-254.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	7.29053947531589	6.83625367865314	6.83343712721787	7.31688820071069	7.23782083090333	6.813158004606	0.207251750524469	0.473643802792525	0.820993116047837
Merged-chr8-13676589-4	chr8	13676072	13677072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1015.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.84112422627246	7.91271187262432	7.69070324968591	7.8621557209	8.07098285855339	7.84252830157243	0.160054604924425	0.474485737521492	0.821494158295637
Merged-chr2-32078717-4	chr2	32078234	32079234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4971.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	5.6630773848531	5.53276344455733	6.04854035127048	5.77152982438415	5.79776761570411	6.02455269474729	0.197915568809722	0.552232403966676	0.861554615615915
Merged-chr5-123713974-4	chr5	123713472	123714472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 5 of 13)	intron (NM_027494, intron 5 of 13)	7072.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	6.51822956773518	6.55968058023469	6.26769101725184	6.81573355897213	6.9480841943451	6.73288401374511	0.593942802180807	0.0260937640114807	0.191728064832191
Merged-chr5-96791999-3	chr5	96791523	96792523	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1362.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.30827046179653	4.37017155410814	4.59529008513905	4.58584797414498	4.36705149235679	4.62213338406423	0.254408002665139	0.56367956509008	0.865992481769395
Merged-chr18-80715504-4	chr18	80714998	80715998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2427.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.25855420002989	3.07132389208596	3.0558040963319	3.05013502215047	2.73380255376695	2.94521452340144	-1.04176899711568	0.142028894047225	0.503126579074525
Merged-chr4-93511033-4	chr4	93510527	93511527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175516.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	3.06772527710543	2.95551934942175	3.01889739405667	2.72834865101501	2.81206245937729	3.25605748946304	-0.312110879832344	0.670259907673923	0.910025735228204
Merged-chr15-96638330-4	chr15	96637836	96638836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	3626.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	7.60892734009284	7.79971800036901	7.17530606686502	7.27911331343906	7.79697348076407	7.08443053584194	-0.183960512943763	0.549600403493993	0.860377701498819
Merged-chr2-48695589-4	chr2	48695088	48696088	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118521.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.65073185370114	3.35712672450901	3.51141658474397	3.51132927062968	3.57777128070278	3.5276056243869	0.10260392230552	0.859146754107006	0.967215747530622
Merged-chr16-93915100-2	chr16	93914600	93915600	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	14467.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	4.40650057802514	3.97136091807769	4.10704632002168	5.51852100042917	5.42658109392122	5.51981264778092	3.05847552788534	3.86729324518528e-11	5.57694517063045e-09
Merged-chr8-95037499-2	chr8	95036999	95037999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 8 of 11)	L1MC4a|LINE|L1	-17604.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	5.9151725358297	5.85805108363046	5.75739404949156	6.10105227428847	5.88689712606342	6.05970206957936	0.287500959037455	0.337446298638471	0.727414835127997
Merged-chr1-66816128-4	chr1	66815619	66816619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	MIR|SINE|MIR	1476.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	8.79394786695249	9.1262740180877	8.54836284573065	8.81200106580106	9.20095476087403	8.77925398705193	0.136083817192125	0.591742518800808	0.877726471452175
Merged-chr15-86217775-1	chr15	86217275	86218275	+	551.0	f1_balb.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	3316.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.08640572153224	5.24737507857778	5.21309875712381	4.4961117877332	4.99668504790482	4.61315508276379	-0.968519919199243	0.0211466369451557	0.167578034945954
Merged-chr15-8168416-2	chr15	8167916	8168916	+	986.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-690.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	4.7322648052647	4.96395674207662	4.87277676788107	4.75809479526346	4.87234719553305	4.97331785594135	0.0152669902038231	0.968789526760861	0.992866574393222
Merged-chr17-10390065-2	chr17	10389565	10390565	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65463.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	6.14859581260803	6.27781994486724	6.06417411691621	5.92999149170676	5.82855031113501	5.88962632192752	-0.50416357313963	0.0833790168363322	0.382121680596912
Merged-chr4-128980542-4	chr4	128980061	128981061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-12663.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	7.07839350152105	6.79893678803955	7.07211834137021	6.90284969263146	7.04310050455062	6.8559778942647	-0.0670265082169724	0.792138574615954	0.949928666249466
Merged-chr10-81088564-4	chr10	81088069	81089069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145365, exon 8 of 12)	exon (NM_145365, exon 8 of 12)	10303.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	5.37231090369839	5.68406583535175	5.73946158013332	5.45406946657645	5.75486645317852	5.77607922990526	0.123245487873504	0.716161989236959	0.926569584146506
Merged-chr11-69052982-4	chr11	69052565	69053565	+	785.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-6710.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	3.0668063183115	3.26432564738184	3.34778422485077	3.25316651155869	2.99296980499115	3.13729861991664	-0.420883986859117	0.520686984104787	0.846662720861138
Merged-chr5-121397943-4	chr5	121397492	121398492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172722)	promoter-TSS (NM_172722)	10.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	6.70894666681668	6.81444716006248	6.53872424296443	7.02570986157158	7.20663111841408	6.86369160895454	0.536755359845863	0.0409003829050687	0.252241258580266
Merged-chr17-25844568-4	chr17	25844074	25845074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163766)	TTS (NM_001163766)	277.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	5.34620443930806	5.23437626909691	5.48418809859138	5.18362892581969	5.38805609556369	5.67685135380352	0.138990183390495	0.698026926226008	0.920174659021129
Merged-chr5-105151013-4	chr5	105150517	105151517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11431.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	6.28778563898257	6.12639524158897	6.47107033715778	6.8076502063528	6.64057759121176	6.21666331414676	0.480311460152924	0.114322118775037	0.451579153051663
Merged-chr17-56079291-5	chr17	56078847	56079847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	-14.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	5.63691655465479	5.48274701188194	5.46067450101327	6.04754215422829	5.96125543854471	5.88146535633919	0.786068992567551	0.0113893919990326	0.11020915565246
Merged-chr7-43641834-2	chr7	43641334	43642334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028236, exon 4 of 6)	exon (NM_028236, exon 4 of 6)	7095.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	3.383035363272	3.59201205732403	3.43445819340637	3.42491227719028	3.82058534260302	3.7712512249318	0.736767959374712	0.212302428961019	0.604754238851012
Merged-chr16-17199827-2	chr16	17199327	17200327	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	intron (NM_009456, intron 1 of 3)	1665.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	4.2242679997954	4.42418420608971	4.20194543905474	4.57083427129657	4.53591857736224	4.4981713374428	0.620665009240301	0.160091286206562	0.53268587766128
Merged-chr3-60607682-2	chr3	60607182	60608182	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 3 of 7)	intron (NM_001253711, intron 3 of 7)	106503.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.04418276902973	3.0202091907541	2.93663214085183	3.09248532332109	2.90701992137198	3.12907724639065	0.171919352069588	0.798334968340202	0.951930937621884
Merged-chr1-138126483-1	chr1	138125983	138126983	+	591.0	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48643.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.14551936211568	5.08959038114874	4.95731602854293	5.05516923049425	4.99299812242673	4.78893599953287	-0.243987269272991	0.517753441434864	0.844729967743376
Merged-chr15-95807168-2	chr15	95806668	95807668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	16325.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.28967722121231	6.41642132662038	6.47193197680146	6.26339059869432	6.54599087795041	6.32625857862462	0.00232812723629934	0.993324944994812	0.998651348330892
Merged-chr2-132018363-4	chr2	132017852	132018852	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	11636.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	6.32138240334663	6.77934379523875	6.71884554806754	6.17847848188381	6.15793888081529	6.54065436312353	-0.529455082583727	0.0800718369515649	0.374320245549913
Merged-chr8-39594936-4	chr8	39594445	39595445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 8 of 9)	intron (NM_001113326, intron 8 of 9)	47733.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.85486325286985	4.4309331104601	4.53562705859964	5.20112641584021	4.89500954511327	5.22858524556004	1.07722128488449	0.0107986848735747	0.10612223585218
Merged-chr2-129311763-4	chr2	129311248	129312248	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1776.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	5.46886793440121	4.98231239253459	5.42669229007444	5.07299710451043	4.66700304154454	5.1262669136948	-0.721094016008663	0.0771777416862664	0.366186093985907
Merged-chr2-61594129-1	chr2	61593629	61594629	+	1000.0	f0_c57.idr	non-coding (NR_149323, exon 2 of 10)	non-coding (NR_149323, exon 2 of 10)	1032.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	8.24988392897537	8.3658400883206	8.1648329461924	8.31441797313256	8.69545579563512	8.11551245551192	0.197812446315411	0.41933741591698	0.788970665994801
Merged-chr4-8916408-3	chr4	8915887	8916887	+	827.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165063.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.50783382717717	4.19450003570014	4.4437654448638	4.94166612223874	4.60795283957888	5.12905089387612	1.22434194146903	0.00635003746590378	0.0727988312845029
Merged-chr13-44419270-4	chr13	44418768	44419768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20459.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.17269943763692	6.41722218224572	5.94223764019939	6.45290684348153	6.28544542742746	6.02912964802424	0.118017914345997	0.70468519893492	0.922514359670029
Merged-chr7-104447892-4	chr7	104447409	104448409	+	856.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009099, intron 1 of 7)	Lx|LINE|L1	-1784.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	3.96750632161938	4.05321699995284	4.74544961467459	4.25224810525768	4.02436186706539	4.80906523493517	0.257926075637049	0.651651454882132	0.902886604713875
Merged-chr7-126702530-4	chr7	126702033	126703033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 2 of 10)	intron (NM_001301374, intron 2 of 10)	1687.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	5.2245811585929	5.17746718957693	5.44504395708898	5.51471634544024	5.74036883267637	5.74776304276629	0.75859439894046	0.0242702009915815	0.183424326177483
Merged-chr1-191085748-4	chr1	191085250	191086250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	8.19236922286174	8.14487170726877	8.08382725150838	8.06576809732386	8.21770999401685	7.87211754810523	-0.107117619682563	0.627014564024546	0.892988961867358
Merged-chr8-39153017-2	chr8	39152517	39153517	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357305, intron 7 of 8)	(CACAG)n|Simple_repeat|Simple_repeat	-144963.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	2.90806718718289	2.81528468330656	3.08969404754646	5.13104279878939	3.62389560309115	3.66423778553609	6.88476609885944	3.67057550699404e-05	0.00121875996323208
Merged-chr5-139375790-4	chr5	139375261	139376261	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	-1936.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.03025544417394	4.76130489264352	5.06501853410817	5.06768059337581	5.26784784395897	5.22720488728354	0.505647889455195	0.177181629872823	0.558127164810064
Merged-chr7-45523000-6	chr7	45522445	45523445	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008807)	TTS (NM_008807)	3323.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	5.23589651714119	4.98585650068725	5.31691463196884	4.98003489487102	5.08830162373865	5.16279627335792	-0.214697494141184	0.561143269253579	0.865407801976397
Merged-chr7-99407773-4	chr7	99407267	99408267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362166, intron 3 of 18)	intron (NM_001362166, intron 3 of 18)	26249.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	4.39034434077957	4.11239093197979	4.3327576895084	4.65850367356356	4.41384982431714	4.44486915278594	0.589753140825697	0.19196268318317	0.578914535258063
Merged-chr5-21187009-4	chr5	21186504	21187504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	737.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.51114615219169	7.20084399086101	7.45234372689925	7.41097034816525	7.19269733532139	7.51923981577377	-0.0269607766797654	0.913533423962951	0.980702746018001
Merged-chr1-14823562-5	chr1	14823141	14824141	+	968.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67675.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	4.94484827170488	4.88976557292944	5.03867252147614	4.81558266465029	5.10626110564052	4.99939062626346	0.0653552586642099	0.863688962456525	0.968269312109804
Merged-chr7-43311761-2	chr7	43311226	43312226	+	601.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357812, intron 1 of 4)	intron (NM_001357812, intron 1 of 4)	1574.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.37195137835005	4.52525272218741	4.51076859987784	4.60589373662159	4.52812172447519	4.26208726590436	0.0302273709568112	0.945351872405414	0.987907378883357
Merged-chr9-66914533-2	chr9	66914033	66915033	+	600.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	5172.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.52744416726005	5.16356051335464	5.25280732540637	5.31711941658353	5.32052623645223	5.49707761074986	0.0926864442402981	0.793744513332833	0.950531747588938
Merged-chr2-52425712-3	chr2	52425186	52426186	+	702.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-812.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	5.88861064522214	6.04291408124702	6.13222622189361	6.0337944126056	6.45029767791945	6.21343199336483	0.393866936714405	0.192641660278291	0.579638651494757
Merged-chr5-134531843-4	chr5	134531348	134532348	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	20586.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	6.41709278317066	6.10790018084238	6.16842106450025	6.0964683802864	6.53884141036168	5.92322108731878	-0.018111623157909	0.955601889168288	0.989763164889919
Merged-chr11-110464114-4	chr11	110463599	110464599	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MTE2a|LTR|ERVL-MaLR	-14416.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.3086198976329	4.07098340094823	4.14302802143827	4.68738320646421	4.21361085470454	4.52490197768325	0.801808856716049	0.0934582780773296	0.407193389963535
Merged-chr9-99479430-4	chr9	99478951	99479951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028768, exon 22 of 22)	3' UTR (NM_028768, exon 22 of 22)	9030.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	5.45443560271202	5.44856709167312	5.70740991208283	5.20185146271242	5.00095196909945	4.90839271210492	-0.979070892415855	0.00681854770872321	0.0766803240637169
Merged-chr11-84555025-4	chr11	84554524	84555524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	29364.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	4.64804944797381	4.80161359317829	4.41896697415987	4.9312667306102	4.85706375876839	4.78978883430073	0.500159238167522	0.22646095423943	0.621413592108663
Merged-chr1-131566330-4	chr1	131565824	131566824	+	939.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46B|LTR|ERVK	-32790.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	3.67043258554336	3.50944608730809	3.53794914634396	3.47401504615013	3.19410442695342	3.13673354298776	-1.1449645135507	0.0686789294823693	0.34291247310945
Merged-chr12-26438978-3	chr12	26438414	26439414	+	974.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	17538.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	6.05306747238267	6.19758763081155	6.18970984217862	4.39605464572356	4.22630645660741	4.57472418684454	-3.90136260527346	1.48468205224071e-20	1.06497779485211e-17
Merged-chr4-3809114-2	chr4	3808639	3809639	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	26516.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.82513757582504	2.9066699199576	2.87349486156975	3.109499071122	2.94810023855893	3.00820277527763	0.732917241478236	0.284340220264807	0.682066593417223
Merged-chr15-95799807-4	chr15	95799298	95800298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8955.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.97271133006562	7.06060860455426	6.93399518849679	6.77694579941294	7.12713797488393	6.96425083744375	-0.0355038792803521	0.888756396962856	0.974158138411807
Merged-chr4-129068283-4	chr4	129067791	129068791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10020.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.88975629438429	6.86277969251508	6.95673884072011	7.0622784569356	7.2492532285879	7.18101044374233	0.408721718684632	0.0882695535926443	0.39436925554858
Merged-chr9-35038243-2	chr9	35037743	35038743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78485.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.07534892448558	5.21326394705786	5.02825054566567	5.37689110179891	5.05338804008931	5.02063028620164	0.102450732611722	0.78360106038861	0.94726085620041
Merged-chr14-57890400-4	chr14	57889887	57890887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-51.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	7.4782118425633	7.57379043079402	7.13385426424198	7.46501515034229	7.24099869384337	7.35977459398782	-0.0910921968510556	0.716681720652405	0.926779899169249
Merged-chr4-12087190-4	chr4	12086693	12087693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 1 of 28)	intron (NR_110955, intron 1 of 28)	764.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	6.99609073396508	7.18827279253228	6.77479497170532	7.43726360690502	7.84215645269313	7.48809941301328	0.891699987022474	0.000813529807276138	0.0153506444145083
Merged-chr9-40344927-3	chr9	40344427	40345427	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	1318.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.30594682716227	3.54645091025311	3.33356928548082	3.41683402967771	2.99365957370672	3.16880222757287	-0.803297571542963	0.223689935883209	0.618447374567053
Merged-chr15-97787859-10	chr15	97787401	97788401	+	985.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	3536.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	6.8948566880356	6.99371213640508	7.05955430975005	6.61987094145717	6.62434215777019	6.75744194152433	-0.493439348809113	0.0475727849427926	0.276280775230824
Merged-chr1-131972710-4	chr1	131972194	131973194	+	971.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2085.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	6.83087754917602	6.94510085162641	7.20501665163212	6.92782213104398	7.08757281845343	7.03120073789671	0.0367401651954634	0.885385088401149	0.973605130359095
Merged-chr14-62230766-2	chr14	62230266	62231266	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	62213.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.83086351629677	4.64163122689997	5.16891704156848	4.86328842138874	4.62856934167917	5.34525364992818	0.173398432135937	0.69949851706019	0.920619136555148
Merged-chr16-75983004-3	chr16	75982504	75983504	+	712.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-17780.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	3.42014602820821	3.25372059343216	3.1625456293321	3.22539324447437	3.18534814415859	3.5649878927533	0.166026825569082	0.795688882297451	0.95127344528235
Merged-chr18-12760413-4	chr18	12759924	12760924	+	929.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19069.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.27918005836125	4.5999251711714	4.65758401700697	4.49852582257703	4.16591580330799	4.86369453633626	0.0261403504597651	0.957080797179858	0.989887454023164
Merged-chr5-114130822-4	chr5	114130327	114131327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	-329.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	6.49839121168765	6.87027564302281	6.26979467391879	6.81541099016793	6.81800182752537	5.99249947111397	0.04677225052392	0.895361647052489	0.975665889379756
Merged-chr19-6942505-4	chr19	6942005	6943005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285453)	promoter-TSS (NM_001285453)	-55.0	NM_001177361	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	6.74787942035767	6.94551468969223	6.86236903573547	6.43840317487828	6.58499502567393	6.67958204608397	-0.450989786206458	0.0817364749528503	0.37821821732895
Merged-chr12-84202800-4	chr12	84202300	84203300	+	879.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	Tigger16a|DNA|TcMar-Tigger	-8785.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	3.7797192791325	3.30417021578266	3.57710165941487	3.59766913115531	3.26913354953034	3.6992322243244	-0.141720080471643	0.820468304473507	0.957648957783354
Merged-chr11-70801092-2	chr11	70800592	70801592	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	11469.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	3.53675060393183	3.22695324682152	3.49205624167505	3.27302044311039	3.31927839397547	3.71194021062134	0.068700301828041	0.912803656144816	0.980463256402781
Merged-chr10-80774772-4	chr10	80774276	80775276	+	905.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 7 of 27)	intron (NM_199322, intron 7 of 27)	19573.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	2.58414952540604	2.58201559770026	2.71765120590668	2.69550146603072	2.6216379476134	2.90638133111396	0.634660747400694	0.399465675500151	0.775862421121533
Merged-chr13-60658280-4	chr13	60657842	60658842	+	768.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	L1_Mus1|LINE|L1	56131.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.37357590362798	4.42134664188508	4.68062993681458	4.30027576437287	4.27699481001256	4.5566547157587	-0.29432368454802	0.512365345397079	0.841890081326853
Merged-chr7-109752273-4	chr7	109751801	109752801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-38.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	8.07390368255433	8.57585741442719	8.10201433569768	8.21253824294082	8.36523243045142	8.01049377812896	-0.0959756372190424	0.704529089489284	0.922447539412348
Merged-chr11-8708841-4	chr11	8708345	8709345	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.44663863493733	6.72961815468274	6.38284819880633	6.6298303261926	6.65045199727181	6.57175623409415	0.131805933873862	0.627101317689128	0.893012220773881
Merged-chr15-53419899-2	chr15	53419399	53420399	+	990.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73716.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.5827354874757	3.49036186144679	3.56774526981136	3.15667699170413	3.36571676898272	3.58596194266386	-0.641177549955354	0.293209754343213	0.690196017357506
Merged-chr18-34624162-4	chr18	34623668	34624668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-456.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	6.03461108006321	6.53274431720969	6.62430544063547	6.26667731097724	6.52849620127773	6.18769403290847	-0.119097914584092	0.706556488539089	0.923001162707983
Merged-chr16-36071048-2	chr16	36070548	36071548	+	929.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159421)	promoter-TSS (NM_001159421)	467.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	6.31731705602159	6.05787660696161	6.07472549342548	6.20398275792474	6.20942502093573	5.99591320142261	-0.0205021599814846	0.944158339336939	0.987586608248351
Merged-chr5-135460331-4	chr5	135459829	135460829	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65783.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.40427367479787	6.19209219755763	6.65245975275002	6.29417784437509	6.58778230577048	6.46173057205337	0.0612978962050354	0.83373000983382	0.961104751385188
Merged-chr3-134339292-1	chr3	134338792	134339792	+	668.0	f0_balb.idr	Intergenic	Intergenic	84343.0	NR_040600	75208.0	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA	3.02040842512973	2.71973667033727	3.11311039935572	2.90949590780537	2.92815413426075	3.01362236419576	-0.03767710954457	0.957695028033171	0.989969855526119
Merged-chr6-97280200-1	chr6	97279700	97280700	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-27420.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.31877277901882	4.19230354237151	4.47010608543737	4.76255367746515	4.13224297812361	4.17511529208529	0.170153334583485	0.733642365469307	0.932175155100531
Merged-chr12-111439129-2	chr12	111438629	111439629	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3532.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.31874550065265	6.11364590040011	6.36005440468788	6.19791780281851	6.23327363468295	6.5077980548834	0.0803040500674861	0.780044467074561	0.945949149660645
Merged-chr16-3714910-4	chr16	3714424	3715424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	3200.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	5.90666708080784	6.09102691395277	6.33496480436172	6.32488953849946	6.30797145559887	6.41273017449004	0.393022327982763	0.177378370458703	0.558276095490477
Merged-chr11-76498323-2	chr11	76497823	76498823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3828.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.34297413315475	4.89225748786205	5.43355204699052	5.08393197515646	5.06732145774353	5.60012715975306	0.0529571259666639	0.896637578996757	0.975838835430135
Merged-chr5-36538816-4	chr5	36538322	36539322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 3 of 13)	L1MEf|LINE|L1	-8199.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.23651755684493	4.17859457766575	4.42208865098313	4.30677965554702	4.40023326617754	4.82226353626863	0.623864809699748	0.182533201717933	0.565398543501872
Merged-chr12-32793918-3	chr12	32793435	32794435	+	810.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26400.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.36619811596661	3.47213838605091	3.4735552174119	3.21165270167433	3.3694003935669	3.14140764849839	-0.730435571183732	0.242100354840718	0.639162163852051
Merged-chr8-84069443-3	chr8	84068968	84069968	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	2632.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	7.0306971027508	7.05953103365381	7.27921659179115	6.59342422956183	7.05406469096661	6.79668536746867	-0.436188811052963	0.10716090199958	0.43687625348266
Merged-chr18-23840926-2	chr18	23840426	23841426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	36956.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.88924023403163	4.09504165300084	4.48587079337528	4.00406627332488	3.71141444671614	4.27790104753003	-0.463997590796686	0.400507561510513	0.77677425276504
Merged-chr11-3170984-1	chr11	3170484	3171484	+	1000.0	f0_balb.idr	intron (NM_030207, intron 6 of 32)	RSINE1|SINE|B4	22479.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.24438260898963	6.76718352559411	6.73612989631991	4.56509404461438	4.23855139702968	7.32408881894964	-0.54060350062808	1	1
Merged-chr17-28233596-4	chr17	28233088	28234088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	834.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	7.54263321967503	7.57499456697163	7.25891140100062	7.51156579463012	7.69602950944468	7.31630703430403	0.076206141007331	0.759118775570612	0.940311236380535
Merged-chr10-34307264-4	chr10	34306775	34307775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 11 of 11)	intron (NM_176968, intron 11 of 11)	9854.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	4.91312459263033	5.18926048544991	4.78231990445801	5.28880515073537	5.13976077258245	4.88913197721565	0.297146669299379	0.454151900121408	0.810100393169515
Merged-chr16-14439289-3	chr16	14438801	14439801	+	766.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 14 of 30)	intron (NM_008576, intron 14 of 30)	77743.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	2.77988178854375	2.93209999041561	3.11001682037182	2.90175397443313	2.69559576596338	3.23479352027211	0.0638137259745411	0.931659789264677	0.984929477721491
Merged-chr17-87294891-2	chr17	87294391	87295391	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	(TG)n|Simple_repeat|Simple_repeat	12005.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	1.89505598912425	1.79374409275936	2.08026964657179	1.75476305127855	1.6969350777745	1.67928929749131	-2.05393832071186	0.0622276365092725	1
Merged-chr2-35442283-4	chr2	35441779	35442779	+	969.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19170.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.13526926952824	6.1708822687033	6.25093816886569	6.10741860151594	5.93297211600121	6.40352539911233	-0.0583789547373218	0.845745336521316	0.963878618836675
Merged-chr7-25766096-5	chr7	25765498	25766498	+	709.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	LTR33A|LTR|ERVL	-11239.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	4.86012020520716	4.93463051509148	5.22632019296456	4.86818665880353	4.913202594079	5.00029906661141	-0.173930396318105	0.651879744521276	0.902896807825606
Merged-chr6-120818851-2	chr6	120818343	120819343	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	3855.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	2.42035906271274	2.55235814081244	2.76529363412713	2.31193305277461	2.47105437541247	2.66167812768716	-0.565366073850621	0.497776213893408	1
Merged-chr7-73593822-2	chr7	73593322	73594322	+	834.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-35427.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.66500361308586	5.33114471477014	5.83524560326824	5.65009701688191	5.87056639582264	6.008447970553	0.420244576195031	0.21758530131453	0.611614495364718
Merged-chr8-128558187-3	chr8	128557684	128558684	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127470.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.72816066728619	4.74223582151799	4.31231800069879	3.87079043733422	4.02362050643077	4.08871558372452	-1.69281849773489	0.000518870544602494	0.0107881509933244
Merged-chr11-77371359-4	chr11	77370852	77371852	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	23072.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.57252736237465	6.36597336688508	6.45095566733007	6.51792678248541	6.90156625975478	6.49216885748552	0.31450537722481	0.267281135507837	0.664581053738824
Merged-chr2-181411269-4	chr2	181410769	181411769	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13119.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	4.14389718320893	4.27233101324137	4.42358960075749	4.26380036462318	4.21937267934281	4.3217832629783	-0.0332276782701144	0.942143424730014	0.987097394617189
Merged-chr2-90745913-2	chr2	90745413	90746413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 1 of 16)	CpG	543.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	8.51998223795561	8.95766355648184	8.5136242303428	8.30731727469055	8.52804491159469	8.40705106573079	-0.36956358788772	0.115658868329677	0.454022364177327
Merged-chr18-82812531-4	chr18	82812028	82813028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43369.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.6137974476258	5.68085134393451	5.79382323593814	5.57959264116839	6.04585469857315	5.43350411917774	0.069809855447292	0.842755500055063	0.963161613177542
Merged-chr11-50313388-2	chr11	50312888	50313888	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	12285.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	3.1137687856408	3.26897451078049	3.3821979469553	3.16982198527304	3.33273621614964	3.45225709642487	0.263378001897892	0.674592059508628	0.911852710156386
Merged-chr14-68593593-4	chr14	68593074	68594074	+	935.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11502.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	4.48453932053138	4.83095917924224	5.12015336357508	4.31455469297709	4.36482070636169	4.68416433437297	-0.890199508912518	0.053308997646218	0.295991930878587
Merged-chr11-53799210-2	chr11	53798710	53799710	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	MTE2b|LTR|ERVL-MaLR	28737.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	2.38501075116877	2.45029776157383	2.69359000517436	2.39790411659985	2.13556108792487	2.58770340686307	-0.792599545202595	0.378461659390343	1
Merged-chr4-151806876-3	chr4	151806381	151807381	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	54887.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	2.96808751239587	2.85948110808831	3.00192901302313	2.85670227254831	2.72087212948961	2.89671835509426	-0.600061684628254	0.393910053736988	0.772010263598721
Merged-chr18-53088904-2	chr18	53088404	53089404	+	998.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87388.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.54172728526776	4.55448102094214	4.65906033369242	5.96618902852172	6.13771922652287	5.6725332109282	2.81301617170609	8.81013859361322e-14	2.05342860531476e-11
Merged-chr15-9072212-6	chr15	9071631	9072631	+	963.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	871.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	6.0893254351802	6.16563321067678	5.8853172171167	6.00272652932723	6.05808074589484	5.70582634856786	-0.202437234574277	0.512373600274394	0.841890081326853
Merged-chr11-120510853-4	chr11	120510350	120511350	+	974.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	19013.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	6.27875277931942	6.03408061943573	6.17282067600796	6.17084105567461	6.10647987397962	5.98793392641254	-0.119623209367802	0.679118381196019	0.913601536935884
Merged-chr9-24512106-4	chr9	24511642	24512642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9002.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	6.11440556132314	6.0106752828965	5.85975089168909	6.01600586003922	5.92312800222444	5.9700686962454	-0.066478628753001	0.821687317141806	0.958023303204974
Merged-chr8-83145621-3	chr8	83145121	83146121	+	911.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19731.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.95125167660211	4.86250743344316	4.94025849188761	4.753823173595	4.55409660597604	5.07148000559193	-0.274012330838907	0.503377021848175	0.837010205116912
Merged-chr17-55878132-2	chr17	55877632	55878632	+	659.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	intron (NM_144546, intron 1 of 3)	821.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	6.44719557117353	6.77151268076984	6.58295017709054	6.56924669482896	6.78983799840737	6.78561269132294	0.171947840953674	0.524101410323124	0.848572432574534
Merged-chr13-3825877-4	chr13	3825372	3826372	+	792.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11885.0	NM_020036	80796.0	Mm.21075	NM_020036	ENSMUSG00000033765	Calm4	2310037J09Rik|AI649108|DD112|Scarf	calmodulin 4	protein-coding	3.18346951882338	3.20065730881346	3.33066469323916	3.10494313467929	2.71274098541439	3.00136624525941	-1.34415208703889	0.0613249609047129	0.321069932035483
Merged-chr4-35219719-4	chr4	35219210	35220210	+	919.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	6170.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	5.66531435894681	5.78294890974008	5.5399935013455	5.92581040197221	6.22293910925791	5.90292279352428	0.641011018896183	0.0428683182000135	0.259545733324536
Merged-chr16-3723490-4	chr16	3722985	3723985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5361.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	5.12395987646113	4.97187548918742	5.08367733469307	5.5320588597724	4.87448212565996	5.40037859306643	0.47477794844869	0.235534372896415	0.631756305201629
Merged-chr13-56174718-2	chr13	56174218	56175218	+	635.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	4167.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	4.83711195929625	5.04477250068933	5.18183298328157	5.04887812208461	4.79260180054406	5.05062837509495	-0.129641638824807	0.738327431421886	0.934032187674406
Merged-chr15-81854815-2	chr15	81854330	81855330	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	B3A|SINE|B2	3496.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	2.73532719853308	2.90320666514909	3.02660955439717	3.0641198199653	2.90000042529907	3.26465268457127	0.881224352656004	0.213597830054601	0.606712918795085
Merged-chr15-97816804-3	chr15	97816302	97817302	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1939.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.09923692751209	4.2838626236144	3.71822680486306	3.78165059437672	3.41436765485947	3.49404710021878	-1.60191156240293	0.00709306110717439	0.0789308169218776
Merged-chr12-82122699-4	chr12	82122194	82123194	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47322.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.22859583629362	3.32449785783275	3.28081699723052	3.03443181718617	3.20359413707412	3.29611367080887	-0.409872940922543	0.517510627262225	0.844597786295928
Merged-chr11-103470701-4	chr11	103470201	103471201	+	945.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-58037.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.96225237178962	4.71966357455188	4.91859459767228	4.78687336321639	4.73347612639148	4.7994195216524	-0.220216609087493	0.574919207714398	0.87094931637326
Merged-chr11-69410457-4	chr11	69409959	69410959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	3216.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	9.32450893395301	9.39829164583586	8.96934387715467	9.07023516057397	9.40102158942456	8.98718637668944	-0.105908106104373	0.652604767456363	0.902986290245403
Merged-chr7-30072733-5	chr7	30072176	30073176	+	980.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177889, intron 1 of 6)	CpG	147.0	NM_177889	330502.0	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	3.69016441679205	3.76487596257721	4.1273848066954	3.48658541413051	3.4425103025061	3.84054528614492	-0.917399858732581	0.116217043131745	0.455137876890266
Merged-chr13-91696473-2	chr13	91695973	91696973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-45048.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.30046358839795	3.81637864632512	3.80086832917867	3.77229865996099	3.5203216493435	3.81943567881033	-0.938675717460723	0.0976667723243656	0.416781499454503
Merged-chr7-101297740-2	chr7	101297240	101298240	+	805.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 3 of 16)	MIR|SINE|MIR	4348.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	3.97602571488797	3.54926573036693	3.81349731479987	4.12196391891427	4.35060785269175	4.22661134683996	1.33030902424846	0.0119834839057184	0.114178601720717
Merged-chr17-29400297-2	chr17	29399796	29400796	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	39382.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.87125299641438	4.01328754231428	4.04944924014013	4.05231566551378	3.83409262326284	4.45292696860425	0.43250270139781	0.412258327543319	0.784379401712255
Merged-chr5-3461655-4	chr5	3461145	3462145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82188.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.31943847121921	6.64064440905917	5.98627965477929	5.73752649021434	5.84572961390935	5.7640772561115	-0.975629390800163	0.00256156033512564	0.0373671655619099
Merged-chr8-70763450-6	chr8	70762914	70763914	+	904.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023065, intron 6 of 7)	intron (NM_023065, intron 6 of 7)	-2493.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	4.74646471949667	4.37551295510249	4.57164548952175	4.62306292477167	4.54441471858851	4.89988142630414	0.272786792165742	0.531223065217877	0.851495999126373
Merged-chr19-5808598-2	chr19	5808102	5809102	+	560.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5930.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	6.51070650609713	6.11588528568679	6.25579659889628	6.17264487199977	6.48285579382113	6.6366276780335	0.219798129335121	0.468188582218208	0.818392725892343
Merged-chr17-71136042-2	chr17	71135542	71136542	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47490.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.09491173980271	7.30225463518265	7.07555138114196	7.14620518096392	7.52305622373629	7.13342453508792	0.186238955556691	0.471718269769434	0.820254709994237
Merged-chr2-49745169-3	chr2	49744667	49745667	+	755.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42519.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	5.86423448132867	6.10523738471507	5.80806881451349	6.13490099396039	6.39608447313266	5.92233538410161	0.409946369273065	0.194713702479326	0.582229434450918
Merged-chr11-118290304-4	chr11	118289808	118290808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033528)	promoter-TSS (NM_001033528)	-64.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	7.65613980868574	7.80419578618498	7.41253378374008	7.5017184112365	7.64608851327164	7.38104777001071	-0.177426840053378	0.465345748175474	0.816986326065284
Merged-chr16-49861924-2	chr16	49861424	49862424	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	6270.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.22616477670515	3.33466967140255	3.746179159573	3.53198283684334	3.48073734465996	3.66985952784123	0.414809248053284	0.499566630298294	0.834582629264444
Merged-chr2-163716597-4	chr2	163716108	163717108	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	22571.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.20467643845006	4.00128447427132	3.90879932216919	4.12370492156009	3.98467900573969	4.12649001992914	0.0727404327480375	0.882937359123086	0.973343819056613
Merged-chr5-130221243-2	chr5	130220743	130221743	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081394, intron 1 of 6)	RMER15|LTR|ERVL	-1092.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	3.75677015502886	3.90282549231478	3.84934340441944	3.92394728630607	3.97519113544434	4.01677255420538	0.412476440039852	0.413796336442116	0.785367083470648
Merged-chr15-103367933-3	chr15	103367443	103368443	+	881.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	2.64721762679573	2.43391912748755	2.58029654104885	2.77664498003061	2.71755205442017	2.90123593492472	1.34406006974711	0.0836940125840846	0.38282729916423
Merged-chr11-116412579-4	chr11	116412083	116413083	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	CpG	449.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	6.71732434792557	6.24499383200901	6.01574467225619	6.92413537593349	6.05978769264495	6.34565664282862	0.210618917804188	0.570883196327991	0.869272553140792
Merged-chr5-99985038-4	chr5	99984485	99985485	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6047.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	4.93527307301422	5.10644111593368	4.9245144789571	4.81330236032442	5.00828428143523	5.28505733469657	0.0976417002135743	0.802145590994551	0.953161751100363
Merged-chr11-72811767-2	chr11	72811267	72812267	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045536, intron 1 of 54)	B1_Mus1|SINE|Alu	15541.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	4.56388336498973	4.60580110056532	4.68048754289879	4.81379519007861	4.71596385371018	5.03171337906323	0.54900469502553	0.175585717461121	0.555563740582127
Merged-chr16-78217883-4	chr16	78217406	78218406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37548.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	8.03694902515202	8.14675967063242	8.01104375039788	8.46248805227374	8.72979532854914	8.15410889530653	0.574448999042264	0.016882052113901	0.144207144265833
Merged-chr11-114983315-3	chr11	114982787	114983787	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6599.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	5.03299141187115	5.06409053933916	5.64454379221344	4.16099378207416	3.94143829117391	4.57130874273682	-2.50026261124934	4.55794153086607e-07	2.70704638758247e-05
Merged-chr10-61144663-2	chr10	61144163	61145163	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	AT_rich|Low_complexity|Low_complexity	3021.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	4.86746159432854	4.84783785948267	4.78957408469816	4.81329414804741	5.15994546153229	5.00397363092007	0.370142518109781	0.339983075093552	0.729670149919636
Merged-chr11-62576004-4	chr11	62575476	62576476	+	935.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011706, exon 2 of 16)	5' UTR (NM_011706, exon 2 of 16)	1490.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	7.0802489764909	7.5039240929705	7.38871727589712	7.09068864442598	7.31941200404706	7.31653504054396	-0.133471036193471	0.60153984196289	0.881943853341137
Merged-chr10-75516013-2	chr10	75515513	75516513	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	1368.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	5.53221778492059	5.70417092568091	5.85561480926396	6.16467867553584	6.37555350972477	5.58710872203273	0.702952518296776	0.0471802236534056	0.275082796328379
Merged-chr13-59809373-2	chr13	59808873	59809873	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 9 of 27)	intron (NM_153538, intron 9 of 27)	13774.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	2.83086956121188	2.98864299128093	3.0790733090343	2.73363622301194	2.84743821080186	2.97963316504408	-0.547691257064154	0.440064936059566	0.801567033070239
Merged-chr3-103214397-3	chr3	103213896	103214896	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42741.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	5.07718629107687	5.01263770446741	4.99693658183556	6.52336160724333	6.72221392685472	6.92364482689149	3.04867729122455	6.50759623495027e-20	4.23034427748236e-17
Merged-chr6-97510010-2	chr6	97509510	97510510	+	715.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-22190.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.34014118698346	5.69541477515145	5.98530004868473	6.79468670291069	7.01781319951675	6.78209234885938	1.98158925470739	2.49873529146728e-10	3.03525206032715e-08
Merged-chr3-127553231-6	chr3	127552694	127553694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197997)	promoter-TSS (NM_197997)	155.0	NM_138593	28036.0	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	7.35718829940511	7.63636879458723	7.6222415817293	7.8432272311584	8.0252831570578	7.31977656753165	0.331878046355052	0.227246192652124	0.622375640490653
Merged-chr10-7820378-4	chr10	7819884	7820884	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-12086.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	4.58991733789594	4.36941825313535	4.70444107946174	4.3871919469612	4.33321997099197	4.45451210135854	-0.420073868782385	0.338350453739509	0.728288914161912
Merged-chr10-79855094-4	chr10	79854601	79855601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029447)	promoter-TSS (NR_029447)	-130.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	8.59157298800128	8.76725490423197	8.35184070981135	8.57722494675248	8.86607501323069	8.3259972579129	0.0411174112696325	0.868148547901908	0.969642939011354
Merged-chr2-129364219-1	chr2	129363719	129364719	+	702.0	f1_balb.idr	TTS (NM_008361)	TTS (NM_008361)	-5683.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	3.90906781342839	3.98618140157635	4.40081927282928	3.98987801142127	3.77759882590444	4.61149111738711	0.162686046621294	0.776700141708889	0.944890351789015
Merged-chr5-66112239-4	chr5	66111748	66112748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14069.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.5232815953255	7.34454456524125	7.15738153376959	7.05429350538999	7.47374787306542	7.23964344932581	-0.122607244695762	0.637515111738621	0.89735407749672
Merged-chr3-9724358-3	chr3	9723866	9724866	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	109313.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.90262500811815	3.87542289914892	3.86726563462685	4.1293680755305	3.67600700849632	4.12777663258912	0.318266877463534	0.550475289814204	0.860709619458349
Merged-chr7-3720475-3	chr7	3719974	3720974	+	706.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011095)	promoter-TSS (NM_011095)	-92.0	NM_011095	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	2.84970116642971	2.82128727920141	3.03902804182133	3.98417497435523	4.12782224469748	3.78475924244717	7.37661724298175	5.94311900458457e-09	5.658066889399e-07
Merged-chr9-22478352-3	chr9	22477855	22478855	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	intron (NM_178415, intron 2 of 22)	2640.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	3.65278370951273	3.76643877161897	3.56809667511458	3.69024241209585	3.75036357116434	3.58357720225537	0.0396250632758503	0.942598629036847	0.987202156853573
Merged-chr1-138856747-4	chr1	138856162	138857162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081226, exon 1 of 3)	exon (NM_001081226, exon 1 of 3)	192.0	NM_001081226	69549.0	Mm.264673	NM_001081226	ENSMUSG00000079283	2310009B15Rik	-	RIKEN cDNA 2310009B15 gene	protein-coding	5.09294721873468	4.94423168677992	4.40252628417325	5.13123665382915	4.89179591308931	4.79351483668369	0.197741164680247	0.6569417783715	0.90473472789738
Merged-chr6-87547606-4	chr6	87547132	87548132	+	943.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14373.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.89384434543634	4.83169814789734	4.86483651928784	5.63726161808696	5.69610395396109	5.19575742971185	1.37964508225907	0.000209390869517984	0.00519634590551855
Merged-chr13-89376297-3	chr13	89375782	89376782	+	852.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164354.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.04562493791815	3.34667315788347	3.29761036627558	3.37844524234735	3.82083044482755	3.48472974892703	1.32008371972925	0.0410940532096375	0.252985645121894
Merged-chr4-128616624-2	chr4	128616131	128617131	+	737.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	1988.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	4.95177733525168	4.98898166889469	5.55644590997227	5.79771476029485	6.13919185184673	6.04724233718001	1.55578938863203	2.15277643984992e-05	0.000777128945800574
Merged-chr3-96570872-3	chr3	96570370	96571370	+	955.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4069.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	5.77896595873783	6.02530293689555	6.35776803262653	5.78801168888313	6.03662936510805	6.00101667848796	-0.202778398554445	0.533545403173391	0.852484319020423
Merged-chr10-67182780-4	chr10	67182281	67183281	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-2969.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.57718210045473	5.76424960475113	5.33588942215602	5.30922520385754	5.6908732493335	5.33455262713598	-0.210393605041096	0.558664488948394	0.864744077984264
Merged-chr8-108692739-1	chr8	108692239	108693239	+	553.0	f0_balb.idr	Intergenic	Intergenic	-21905.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.53474638903375	6.39858048596721	6.57269550668892	6.34296082661775	6.54695663049268	6.17077228053664	-0.202786728651103	0.47127048612322	0.819917078029108
Merged-chr2-30415589-4	chr2	30415094	30416094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138748)	promoter-TSS (NM_138748)	154.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	8.10715308768022	8.04871584457953	7.94213966316199	7.91631001410719	8.01581921489032	7.88788006226687	-0.132763032482049	0.531309605624236	0.851563330256521
Merged-chr7-139212553-4	chr7	139212052	139213052	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027164)	promoter-TSS (NM_027164)	-436.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	8.10252194190846	8.4912233223372	7.84358970073262	7.81845918679592	8.0788957321982	7.81421755225348	-0.3782850785818	0.148266820542828	0.513762236213799
Merged-chr10-10428410-2	chr10	10427910	10428910	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43904.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.27245361874659	6.58369812271206	6.31615030720501	6.82835565231225	6.82605602475059	6.79438131114997	0.65455997801934	0.0145076151222105	0.129689475621926
Merged-chr7-118117230-2	chr7	118116730	118117730	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1083.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	5.18919983082169	5.11259224704774	5.55340031792607	5.4423685477913	5.40705901049591	5.47878822455046	0.307406613923935	0.385185300984944	0.766245063697887
Merged-chr16-13294451-3	chr16	13293973	13294973	+	566.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	intron (NM_001122667, intron 2 of 16)	29394.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	3.07526988179796	2.87883657489995	3.07631969040443	2.61386335153236	2.44295975704777	2.9190377008986	-1.88519439410462	0.0244475872066689	0.184286586007886
Merged-chr1-55513057-4	chr1	55512534	55513534	+	858.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	107088.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.0248648980427	2.84403468137281	3.10620825134447	3.3318511745576	2.82816543145133	3.34555739608919	0.841552914200748	0.241731614564887	0.638803036215977
Merged-chr4-141795099-2	chr4	141794560	141795560	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355176, intron 1 of 8)	intron (NM_001355176, intron 1 of 8)	1448.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	2.86062708152584	2.78519210328123	2.92682265322302	3.04383541038443	2.81276649047917	2.74943664424199	0.100052682858783	0.888830386558686	0.974196090932383
Merged-chr13-37620739-4	chr13	37620220	37621220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205318.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.91812325861138	7.7187637750363	7.59933416516332	7.71427160373373	7.98632330913428	7.47130605877933	-0.00748068756161192	0.976471978400049	0.994723308989508
Merged-chr11-96916636-4	chr11	96916134	96917134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308183)	promoter-TSS (NM_001308183)	-120.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	7.3825078694079	7.23100421897463	6.98935605992944	7.25119427121506	7.40556931698612	6.93064966099132	0.00459094489743532	0.986346647391292	0.997033990984076
Merged-chr12-86891572-2	chr12	86891072	86892072	+	886.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6758.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.47099956598988	5.49336018746712	5.38470826954781	6.37682285238857	6.36888868332098	6.11948044755064	1.49303983391664	1.06489230224445e-06	5.7129309274762e-05
Merged-chr4-119294639-4	chr4	119294171	119295171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011732)	promoter-TSS (NM_011732)	-158.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	7.7927736964852	7.62576563872772	7.64327060667155	7.57413463264871	7.33433159455048	7.5589086101916	-0.294411039992398	0.200186593397767	0.589090609118738
Merged-chr16-91845715-2	chr16	91845215	91846215	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	ORR1G|LTR|ERVL-MaLR	85915.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.8203498969778	4.54986951386088	5.25482103557948	4.78460260802307	5.1681756327678	5.19881713757263	0.359998571255929	0.408998906852584	0.782473112145764
Merged-chr1-131360286-2	chr1	131359786	131360786	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-80723.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.73629458952123	4.26857750100137	4.80453459141301	4.24509983103899	4.24659943090549	4.79982856889377	-0.422225614628837	0.391659076321153	0.77069538219803
Merged-chr7-81327906-2	chr7	81327406	81328406	+	949.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 19 of 21)	intron (NM_008803, intron 19 of 21)	17328.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	2.82719227230319	2.71810193924371	2.95102678043441	2.8501232728166	2.60894180524828	2.96544145339521	-0.106845693974747	0.885128408635458	0.973549591486895
Merged-chr7-48881650-1	chr7	48881150	48882150	+	566.0	f0_balb.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-54.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	3.2214366858005	2.89282404854605	2.88998252454479	3.18339994150105	2.97313176710257	3.0869631604852	0.300510210375968	0.666975065713609	0.908463623849139
Merged-chr15-62008083-2	chr15	62007583	62008583	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22742.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	2.64877081320962	2.60683990053849	2.83512312940225	2.64368952782019	2.43198839371999	2.90744558193578	-0.144758066094033	0.855478379325285	0.966226965829968
Merged-chr8-103940709-4	chr8	103940210	103941210	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160915.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	5.55038028950174	5.75726353921195	5.90771763534256	5.54101271959369	5.73292838334591	5.64671107104268	-0.169567185662443	0.601409386280062	0.881938496212464
Merged-chr11-69365104-4	chr11	69364611	69365611	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	4315.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	5.76992623654735	5.86405117017275	6.42051792686707	6.05086770335247	6.09640184352898	6.18584028868752	0.125127233955454	0.704730597851658	0.922514359670029
Merged-chr18-38943456-3	chr18	38942962	38943962	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-24763.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	2.9425966281515	3.2312553142522	3.15994718060285	2.72286516749801	2.64580922984695	2.63415435597751	-2.59518374686543	0.00145288178913742	0.0241522383569874
Merged-chr11-55209888-3	chr11	55209360	55210360	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5520.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	4.42709605198773	4.41274835338643	4.3504988348564	4.38469509966726	4.07428612888887	4.87121419599439	0.192341113317116	0.699097071464735	0.920515737149593
Merged-chr6-134027222-4	chr6	134026705	134027705	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8495.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.17551239532322	3.76330954202502	3.90195944335982	4.32187783784657	3.8367685401812	3.8673177632483	0.201549724924735	0.713200267451331	0.92541785131338
Merged-chr7-16309471-4	chr7	16308941	16309941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-142.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	7.82260720209226	7.77215797608982	7.44235242877599	7.87952722882314	8.15165445976659	7.64377359477408	0.315628181400697	0.21902817292266	0.6131487076651
Merged-chr6-30337097-4	chr6	30336634	30337634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32595.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	5.57883183437576	5.65202780868267	5.29930297732594	5.58959960342477	5.6760657762959	5.55126758296896	0.150117716446091	0.65158181534526	0.902861277123203
Merged-chr8-120790883-4	chr8	120790365	120791365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52226.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.77784374313359	4.39026678707242	4.25262251947645	4.59809272465709	4.22966586266212	4.22393557447033	-0.347013343038944	0.47401189398829	0.821247104271739
Merged-chr5-34528013-1	chr5	34527513	34528513	+	1000.0	f1_balb.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	2229.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	4.38952898900154	4.64403044777869	5.16576233884586	5.07636649452783	5.05153350506155	5.42646665308605	0.924245083360346	0.0383643928050651	0.242464484497945
Merged-chr17-27909328-4	chr17	27908841	27909841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	35.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	8.56797724689761	8.39813270493032	8.17078359111771	8.27577699084199	8.25635646194398	8.35330101630092	-0.140475596756925	0.52302301740426	0.847930260153775
Merged-chr11-121687624-2	chr11	121687124	121688124	+	777.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14473.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	2.26685101683324	2.19756438169161	2.37006739342034	2.1541101390152	2.09715855902203	2.18523075920922	-0.968339913472888	0.271597243902748	1
Merged-chr10-128748448-4	chr10	128747962	128748962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	7.0	NM_001253704	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	7.95057014830539	8.25453645011139	7.94842607432579	8.12235209500289	8.3292184642526	8.01974666792029	0.148647340508711	0.522223479968382	0.847502951342041
Merged-chr2-157069653-4	chr2	157069158	157070158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	9607.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	6.49287840588274	6.28627055945043	6.54180148804585	6.22360371812454	6.30027157961965	6.27069646504422	-0.284963311990529	0.300552071694224	0.697311691851564
Merged-chr19-40646745-2	chr19	40646245	40647245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	RLTR34B_MM|LTR|ERVK	-13025.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.84935448608687	4.55095710655103	4.86082737307873	4.72498353976153	4.35048701760703	4.6641582659923	-0.414956708483992	0.338231237699626	0.728169120005134
Merged-chr14-120328581-2	chr14	120328081	120329081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	22129.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.78466473574458	3.28678183336584	3.54870481048639	3.84249172019218	3.68096289259723	3.72847508005882	0.654793150452368	0.269042015627142	0.666194755066135
Merged-chr14-47393919-3	chr14	47393426	47394426	+	843.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 15 of 18)	PB1|SINE|Alu	20066.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.50319306431435	4.24260235391476	4.31226044174763	3.70401465961923	3.58732882505596	3.91239794337448	-1.94311569755888	0.000216823682199682	0.00534561924399144
Merged-chr16-87495163-1	chr16	87494663	87495663	+	943.0	f0_balb.idr	promoter-TSS (NR_040375)	promoter-TSS (NR_040375)	706.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	6.9289336693058	7.06744190830521	7.06002106866261	6.84214235640187	7.06190526878373	6.99984385204811	-0.0693209013737787	0.777606319067566	0.945202525595529
Merged-chr4-95152416-2	chr4	95151916	95152916	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100194.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.39288920039596	2.12630619247872	2.36780048949248	2.14979697234802	2.02743295681126	2.18121632771432	-1.34311618665894	0.145176326150187	1
Merged-chr9-61703707-8	chr9	61703166	61704166	+	819.161438	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210844.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	5.4206930255834	5.12335693825214	4.44443913696158	5.04632897765698	4.76888650934607	4.87539443240346	-0.3554403970318	0.447945165867434	0.806923889101718
Merged-chr2-178506872-2	chr2	178506372	178507372	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76357.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	3.06638953481861	2.9576398417365	3.18309043818601	2.78816988586093	3.08149993482435	2.7740390679458	-0.800002441635824	0.276620046125325	0.674003097641857
Merged-chr13-113588816-2	chr13	113588316	113589316	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29748.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.2347223567729	5.07194431151649	5.02155059571776	5.27177669259056	4.719725957824	4.64608559402133	-0.426495225226459	0.310265247577103	0.705829393476587
Merged-chr13-17977041-4	chr13	17976538	17977538	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16313.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	7.22834251777396	7.6268427376047	7.31922700278489	7.74946363202101	8.00233189452215	7.3756369632656	0.496352676116248	0.0722721817158379	0.353157446871531
Merged-chr19-29522234-4	chr19	29521728	29522728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	-54.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	8.71334593291996	8.65887390218441	8.5813414923998	8.58190991469769	8.6152387761881	8.43023384928352	-0.146338337536748	0.468149217306172	0.818375980242967
Merged-chr19-5073358-2	chr19	5072858	5073858	+	815.785706	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5280.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	4.27377133462875	4.04099290477312	4.15473480219064	5.00943012233815	5.18440177925484	4.38277467685414	1.85222030207126	0.000136230719574902	0.00367668229838403
Merged-chr12-31351438-4	chr12	31350911	31351911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007861)	promoter-TSS (NM_007861)	60.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	7.09292787965023	7.50943819232906	7.3283068550324	7.47203075764697	7.28257007780022	7.24789052040075	0.023772497023894	0.924868151962096	0.983070278897208
Merged-chr15-83595168-4	chr15	83594664	83595664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183017)	promoter-TSS (NM_183017)	-7.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	4.06943106242375	3.94662896719445	4.04729980280276	3.98247087678704	3.87622383453056	4.33318181770841	0.134612314833717	0.791021574225788	0.949694766870106
Merged-chr17-33995073-1	chr17	33994573	33995573	+	764.0	f1_c57bl6.idr	TTS (NM_001347346)	TTS (NM_001347346)	5260.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.26465696621783	2.31950059802202	2.6756726957628	2.53684986014159	2.52154521431996	2.6285311527243	0.811567152445761	0.335229435008796	1
Merged-chr2-164823442-4	chr2	164822952	164823952	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	766.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	6.02667731749597	5.93707003097927	6.24112413871573	5.91352716152447	6.24791394013555	5.98099507619501	-0.000680280114106242	0.998228545906938	0.999590080903912
Merged-chr4-145201761-4	chr4	145201367	145202367	+	951.5089109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6862.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.2186647138107	4.42962699457228	4.62893695489485	4.15405102409666	4.3019080059461	4.42302962119905	-0.355091763979332	0.444328046772575	0.804151037842623
Merged-chr11-3649113-4	chr11	3648631	3649631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159288)	promoter-TSS (NM_001159288)	-317.0	NR_002321	544752.0	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	8.1022241775225	8.31641462222857	8.01275060703058	8.27537896956658	7.95518519327356	8.04662295022543	-0.0779469530552865	0.734368256392777	0.932426757820458
Merged-chr6-97465700-2	chr6	97465230	97466230	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-6444.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.73153499520197	6.69906711220338	6.92193819963811	6.71899064788233	7.00929438051859	7.12068141040583	0.272585889929452	0.302174908474316	0.698940673528628
Merged-chr12-3909871-2	chr12	3909371	3910371	+	961.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	18127.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.52505293310516	2.62307618346152	2.69450185001011	2.76049427971253	2.57286965132225	2.76781081068977	0.477298718904847	0.527711027598146	1
Merged-chr14-103890003-2	chr14	103889503	103890503	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-45527.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	2.6212000360786	2.60913129356444	2.37996966127229	2.62715433317173	2.65718425101225	2.71837873509369	0.680846118898853	0.396026671605458	1
Merged-chr4-63846014-2	chr4	63845514	63846514	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009403, intron 2 of 3)	intron (NM_009403, intron 2 of 3)	15270.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	2.47665105209404	2.51188657189311	2.64220430554205	2.57657881401588	2.65373061452275	2.71522337983343	0.613986645927033	0.422054772725221	1
Merged-chr1-152538660-1	chr1	152538160	152539160	+	540.0	f1_balb.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	86557.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.79770809924716	4.73637535877458	5.03320858924302	4.8606706864855	4.88100563159943	5.42045967826287	0.464160029952164	0.264061507553598	0.661946214222778
Merged-chr4-126148443-4	chr4	126147966	126148966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172145, exon 1 of 3)	5' UTR (NM_172145, exon 1 of 3)	463.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	4.99307454420498	5.13550598676918	4.95241140238275	5.09426176875591	4.82348167816169	4.98132961536921	-0.147149771330819	0.697591514106289	0.920011490392658
Merged-chr11-120353841-4	chr11	120353331	120354331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5153.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	8.10025611924639	7.84514541409566	7.87303402395517	7.90112818081077	7.97345984422907	7.63850718556491	-0.134495252000893	0.563751582020847	0.865992481769395
Merged-chr2-129630273-1	chr2	129629773	129630773	+	840.0	f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	34811.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.19800422249213	4.26545857140274	4.57570143444109	4.29726992086981	4.14317643901383	4.48652265251642	-0.105539689279664	0.82275597469076	0.958153338614688
Merged-chr1-131097840-4	chr1	131097345	131098345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-2.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	8.02749468143918	7.49028153618989	7.63504384476843	7.87059547490527	7.49843801235759	7.18396224370593	-0.270137866897746	0.353818174643188	0.74093981667364
Merged-chr17-29362125-4	chr17	29361627	29362627	+	962.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1213.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.28011612941874	5.33031538022158	5.58485677472541	5.37646919535583	5.41594342841821	5.56694604981539	0.10853996360962	0.750404820384941	0.937550343416037
Merged-chr11-75163738-4	chr11	75163189	75164189	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001098203)	TTS (NM_001098203)	4463.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.36914096330214	4.88767225040051	5.54759137481709	5.13630030278446	4.73241185084768	5.27810844485886	-0.472971661318738	0.263543659049515	0.661476013554917
Merged-chr11-116413127-4	chr11	116412623	116413623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-91.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	7.95729235618755	7.45953635515734	7.21687951299354	7.91375366679021	7.58021783682996	7.1140633979522	-0.00911696154077437	0.977320766063575	0.994771164142869
Merged-chr2-156729903-5	chr2	156729431	156730431	+	932.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	8652.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	7.00716421757011	7.22339725810391	7.12688731229508	6.92637474143615	6.97577554422404	7.19637636320555	-0.138076284793536	0.577206709138884	0.87205828500771
Merged-chr12-17271491-4	chr12	17270972	17271972	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027959, intron 2 of 12)	ORR1D2|LTR|ERVL-MaLR	4877.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	3.03849565677164	3.0972884289951	3.08402209526212	2.99136048151541	2.95634605245794	3.15564279552732	-0.189306881106777	0.774076997747668	0.944274081186197
Merged-chr1-151617863-2	chr1	151617363	151618363	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	Lx2B2|LINE|L1	46490.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.39765825234045	4.42709126307286	4.7765668749538	4.35770081219292	4.31743388632751	4.58395973554358	-0.296661734072858	0.509378454637992	0.840276014621401
Merged-chr1-127404154-1	chr1	127403654	127404654	+	578.0	f1_c57bl6.idr	intron (NM_145128, intron 11 of 17)	intron (NM_145128, intron 11 of 17)	199168.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	2.48728195891715	2.54426225110072	2.6988640848369	2.30553913632763	2.43537373367068	2.65238887028509	-0.645572821050667	0.432962455159481	1
Merged-chr16-31700394-4	chr16	31699841	31700841	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	B1_Mus1|SINE|Alu	4793.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	4.23947506070586	4.39008095553169	4.57124635893263	4.26080686728012	3.97616503764502	4.48177593561572	-0.417837358983352	0.388595368749951	0.768454106589014
Merged-chr8-13671422-2	chr8	13670922	13671922	+	821.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	6165.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.54428022070923	6.16378664996911	6.35105074074028	6.11063906534091	6.1969434341816	6.49943483538829	-0.152874135102637	0.609787448732179	0.885315715493415
Merged-chr10-121507503-4	chr10	121506968	121507968	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31218.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.79509276070466	5.82736041251622	5.80829625619091	5.49116337650779	5.49350056703015	5.32998565477949	-0.674401857409314	0.0341764353046513	0.22621532327018
Merged-chr11-106036811-4	chr11	106036322	106037322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027946)	promoter-TSS (NM_027946)	-50.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	5.70471212941169	6.13569561118602	5.7337709908525	6.25465291670356	6.30969076509533	6.20282336942136	0.640685287905624	0.0395636309005182	0.247166498984182
Merged-chr14-52198355-4	chr14	52197848	52198848	+	854.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_201637, exon 37 of 37)	3' UTR (NM_201637, exon 37 of 37)	-1109.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	4.91612665177203	5.4365490434878	5.47335111822739	5.8724271911397	5.78025547991444	5.7015962537119	0.932758691060772	0.00965146146854869	0.0980560202533576
Merged-chr7-97310363-2	chr7	97309863	97310863	+	808.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177412, exon 10 of 10)	exon (NM_001177412, exon 10 of 10)	15601.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	2.78447058279547	2.64343485351548	3.03012202903329	2.82950164186755	2.9450245972913	2.86862466884181	0.303204047410924	0.678018245597386	0.913302826194187
Merged-chr9-107289764-7	chr9	107289247	107290247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316691)	promoter-TSS (NM_001316691)	130.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	7.74340064357143	7.72379688595716	7.06987443000629	8.02859003652842	8.19783082785703	7.68640040679034	0.623028767596526	0.0318107682704519	0.216300004404004
Merged-chr2-131478468-4	chr2	131477994	131478994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13368.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.82202057909592	4.24210229526745	4.13279611197633	4.70112641067276	4.61898917219587	4.25748906309213	0.241101381860614	0.63778699713177	0.8973803061326
Merged-chr8-67879501-4	chr8	67878995	67879995	+	895.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	31451.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.95888756219185	4.4094331387136	4.20452198941383	4.34972904651955	4.56774504589063	4.12703766402127	0.432236574094075	0.385576885986371	0.766591069902819
Merged-chr19-7018429-5	chr19	7017930	7018930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1039.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	8.67405181047245	8.79778709786048	8.62412522383096	8.69173365715499	8.86166428682036	8.7180650090811	0.080952164394953	0.688188284786848	0.917193226920892
Merged-chr12-85444858-4	chr12	85444349	85445349	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29041.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.4588189124442	6.01555510590237	5.92992954334809	6.33200491434251	6.24549042968956	6.15625117203046	0.137704036483093	0.658395848559019	0.905014667687917
Merged-chr7-133048283-4	chr7	133047743	133048743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32996.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	6.63584509365256	6.67200990083124	6.82171197430843	6.82435022422395	7.01249982398494	6.75894959982992	0.266402968855403	0.29879876410298	0.695489982940998
Merged-chr7-127708849-4	chr7	127708338	127709338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009746)	promoter-TSS (NM_009746)	-72.0	NM_001347652	12055.0	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	6.28142962424989	5.85571624738847	5.98683202925269	5.98176325934749	5.52797640940707	5.77869558229116	-0.503086698788087	0.131764340454868	0.485405199476187
Merged-chr16-23983391-2	chr16	23982891	23983891	+	924.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	CpG	-2108.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	5.72611239697683	5.49836889999187	5.35532359763798	5.48953445506742	5.48539448920306	5.67897439095327	0.00554423435723916	0.986884820476125	0.997112900369387
Merged-chr13-67844306-4	chr13	67843817	67844817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11587.0	NM_001309373	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	4.13787798550824	4.24818474700235	4.05236163120106	4.37539646834407	4.29447701535394	4.48368579075645	0.609325892996991	0.186809280334876	0.571637546216283
Merged-chr6-17811226-4	chr6	17810747	17811747	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	RLTR40|LTR|ERVK	62077.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.76981823541681	3.85991145845903	3.66880438426841	3.35642543294666	3.67113708144792	3.63245067861335	-0.712305801357436	0.213316808702435	0.606196206830948
Merged-chr2-129307745-2	chr2	129307245	129308245	+	768.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040371)	TTS (NR_040371)	2227.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	7.31434382627576	6.83278615546572	7.11497546841514	7.44921117340713	7.57139181351081	7.22267786873433	0.485210419912318	0.0680328592805054	0.341345764291624
Merged-chr2-59161700-6	chr2	59161139	59162139	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001178)	promoter-TSS (NM_001001178)	789.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	7.85633805522374	8.15477198121185	7.90595390284155	7.79404851910113	8.11148271638445	7.84067838692288	-0.0758603101793212	0.747633881528627	0.936653971666454
Merged-chr16-91407582-2	chr16	91407082	91408082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	1347.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	7.75580182551532	7.30532016046568	7.49156048493525	7.96709596503026	7.81943930876009	7.54850373740022	0.37820380407707	0.141184985216829	0.501979601184758
Merged-chr11-59560457-2	chr11	59559957	59560957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	RLTR9E|LTR|ERVK	11281.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	4.64456976183839	4.53225303775084	4.70396439929938	4.56266845534155	4.91164739856864	5.29128353885899	0.730701407045402	0.0951606572256204	0.411148363215922
Merged-chr9-54734558-4	chr9	54734051	54735051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023191)	promoter-TSS (NM_023191)	-2.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	7.20750587045862	7.37713543625425	6.84193653581522	7.29292649987959	7.30600724687508	6.93138602885173	0.0362999526512287	0.895457788212901	0.975665889379756
Merged-chr11-75138667-2	chr11	75138167	75139167	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	29485.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.46466473893789	3.57087802808414	3.98416827332236	3.56050850502155	3.79055036228024	3.50537429631257	-0.180320092169223	0.762978840875431	0.941663714620562
Merged-chr17-80731272-4	chr17	80730778	80731778	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3253.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.79172983202212	4.90861577227015	4.78594483555472	5.03793712324145	5.20739891762739	5.10633057090934	0.629639434343039	0.0928258436262106	0.405941703707875
Merged-chr14-31017822-5	chr14	31017363	31018363	+	830.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153547, exon 2 of 15)	exon (NM_153547, exon 2 of 15)	1268.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	5.38084902457047	5.10136616831985	5.09798108562792	5.23697915221395	5.29589160904405	5.01762968122536	-0.0145457413563476	0.968490703807414	0.992792165162521
Merged-chr1-34821606-4	chr1	34821123	34822123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	L1ME2|LINE|L1	19901.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	5.02603536279448	4.68450749687229	4.81038689708709	4.71477475523313	4.97793741508015	5.0874256495252	0.182825924608032	0.651391075232935	0.902792421139999
Merged-chr11-69073550-4	chr11	69073048	69074048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028566)	TTS (NR_028566)	122.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	8.27432614113428	8.45301725965972	7.48698858881412	8.09646115012895	8.61603381376699	7.58817626266301	0.048046361851602	0.932815242443926	0.98531684549485
Merged-chr1-172522716-4	chr1	172522192	172523192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	1562.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.64703798880961	4.16465268803592	4.17234724678275	4.52084408528653	4.14751745299577	4.55263110358305	0.14846129040021	0.764653684365935	0.941983059468209
Merged-chr6-97461911-4	chr6	97461411	97462411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MLT1A|LTR|ERVL-MaLR	-2625.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.10352888931944	7.99594847716563	7.92744014454895	7.94220720752056	8.24274313339439	7.57004434504424	-0.0765670981141082	0.767209808382441	0.942573703853445
Merged-chr6-115697923-4	chr6	115697407	115698407	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21272.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.89569334299393	6.10022026780102	5.45344403560498	5.76150210734101	6.10328631275803	5.83716574819986	0.102010228509325	0.769468843031021	0.943125565788486
Merged-chr2-170254038-2	chr2	170253538	170254538	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102323.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	2.92430609643092	2.87333888957377	2.80627951603424	2.9697634878637	2.61598052313534	3.00138990011779	-0.0037985586178306	0.995908123121272	0.998961028701257
Merged-chr9-21592846-4	chr9	21592347	21593347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-16.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	7.50464040524419	7.5655080204215	7.51274290052215	7.44693426156129	7.59735917167816	7.21351875307622	-0.13134170351729	0.58054944656607	0.872884157869997
Merged-chr10-13969179-4	chr10	13968680	13969680	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	2801.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.67990350716363	3.61440613787453	3.70533086197882	3.91543127547608	3.72275441915373	3.61318420196474	0.315754189920745	0.561350420410951	0.865407801976397
Merged-chr1-43091340-3	chr1	43090770	43091770	+	925.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	1216.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	4.50824554195262	4.30478959968888	4.50423930397343	4.56293522469666	4.08482416539921	4.40276908143341	-0.207687522953977	0.657333009933059	0.904798742244684
Merged-chr5-120526447-4	chr5	120525946	120526946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	15254.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	6.12803063139594	6.0510651860048	5.83167355514514	6.62928363158563	6.43950623047147	5.81164266275228	0.559155092972979	0.101955024064822	0.425901295598742
Merged-chr10-19060668-2	chr10	19060168	19061168	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45258.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.1057100324757	4.08912061730069	4.22217608151864	3.95154977849803	4.2242630343218	4.00940045762195	-0.172528887814474	0.723813012931131	0.929128417950564
Merged-chr14-75170564-2	chr14	75170064	75171064	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	MLT1C|LTR|ERVL-MaLR	34139.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	2.95241649531125	2.9591952275485	2.99183041022624	2.94635695815651	2.79282203696794	3.00517667817738	-0.264010556676514	0.700305864757712	0.920919335036368
Merged-chr12-87472332-4	chr12	87471833	87472833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025507)	promoter-TSS (NM_025507)	-34.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	7.43188836273864	7.96581411413987	7.39321677711438	7.54251223609586	7.66475738562924	7.26343528246058	-0.181676913339172	0.514041076323973	0.842928757124913
Merged-chr18-82908298-2	chr18	82907798	82908798	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2581.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	2.25290252720985	2.43778877292155	2.46560023853583	2.08611863644879	2.40729358987368	2.28294169200824	-0.780126163106173	0.397478909255038	1
Merged-chr5-148742309-2	chr5	148741809	148742809	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028285, intron 1 of 1)	B3|SINE|B2	469.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.7558254102664	3.66394548344673	3.93456466638723	4.30322400615598	4.53600238112744	4.41864293285959	1.9046406337503	0.000136604185852033	0.00368326671949967
Merged-chr2-34741974-4	chr2	34741470	34742470	+	935.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	13262.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	5.17032571883144	5.2566208606515	5.47429548464755	4.81090693342478	5.17350711141629	5.11546643895556	-0.519068719478636	0.169147373564691	0.545783024459701
Merged-chr4-144980953-4	chr4	144980464	144981464	+	991.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87827.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.63273697304804	4.65014420332541	4.43034965443543	4.42496970435477	4.09536492529566	3.82850318444678	-1.13268063098314	0.0256332903839499	0.18974244517994
Merged-chr1-194977288-5	chr1	194976825	194977825	+	889.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033564)	promoter-TSS (NR_033564)	-366.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	6.13991529736782	6.57399842293087	6.14431948110229	6.06494808261195	6.14908756143102	6.13956421751848	-0.323989955731355	0.283685448966362	0.681376161050487
Merged-chr2-136937019-4	chr2	136936519	136937519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37668.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	5.48765587566057	5.66845141545075	5.65677783169954	5.19815730219318	5.08131878568938	5.69318422635433	-0.519593389327125	0.15834660933207	0.530090871069993
Merged-chr13-9738314-3	chr13	9737814	9738814	+	856.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	25496.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.8341815155997	4.07276546407152	3.95558512962181	4.10358883225697	3.89916607766402	4.0248177447492	0.146415191140809	0.770845584707904	0.94346492428182
Merged-chr10-25434592-4	chr10	25434094	25435094	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	26226.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.04277751259041	4.30261918529801	4.12187941023806	3.98256509815158	4.20912205721698	4.23600653557402	-0.046347854230618	0.923686153021895	0.982727549942016
Merged-chr6-50144862-3	chr6	50144360	50145360	+	737.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	34000.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	2.95183227051502	3.12600800959048	3.17224724170837	2.96745953422256	2.8531661337321	3.07364113717939	-0.565953296223866	0.404964010878866	0.779879311621003
Merged-chr11-116195458-4	chr11	116194993	116195993	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-3362.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	5.66870943717736	5.4268070966682	5.73703521627907	5.32003292866011	5.25107858041745	5.48182446836827	-0.510278570319277	0.133564657903074	0.488819290786001
Merged-chr1-34851765-4	chr1	34851288	34852288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	1799.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	7.39218266546495	7.7400697608648	7.30068123793288	7.64722322128117	7.83865402694192	7.50184012346428	0.25672370427326	0.313926217992372	0.708312869876137
Merged-chr1-77741493-4	chr1	77740997	77741997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	-226409.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	4.29429740143957	4.05341092895216	4.04508977177125	4.84234232698672	4.3366022854069	4.45195156800022	1.09727276864945	0.0236531074784593	0.180330563227748
Merged-chr4-32984063-2	chr4	32983563	32984563	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027491, intron 1 of 6)	intron (NM_027491, intron 1 of 6)	1065.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	4.75883464818731	4.67441649655532	4.19736467964061	3.91949608965959	3.59755978457327	3.58744269721904	-2.57845196362497	6.17211799461921e-06	0.000264999790555353
Merged-chr15-83145089-2	chr15	83144589	83145589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	4289.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	4.72868557512183	4.08059324585275	4.38584067104391	4.84544561022044	4.57032921338909	5.12039349860693	1.0063674491222	0.0393109896292729	0.246105546992141
Merged-chr7-80180027-4	chr7	80179589	80180589	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6752.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.1645681342482	4.95344770420012	5.07617869864907	6.74893602838934	7.20033129929333	6.5108231514973	3.18165535007371	9.13332880551284e-20	5.75731835794782e-17
Merged-chr5-141014394-4	chr5	141013896	141014896	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13800.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.30814925919421	5.38480125263508	5.70002025951972	5.30492882063854	5.36830436871047	5.11566286378028	-0.369364263515041	0.302609637850095	0.699237510309101
Merged-chr15-64040954-4	chr15	64040453	64041453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	18811.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.51962398916265	6.46439242586859	6.57074088442954	6.45115610988658	6.33476876579531	6.43729237311835	-0.180113948101189	0.494071214824393	0.831815174927983
Merged-chr4-149160178-4	chr4	149159750	149160750	+	834.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 5 of 12)	intron (NM_001081274, intron 5 of 12)	5832.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	3.26145394245967	3.48349524655862	3.38037592507637	3.22243892016081	3.38015800224096	3.39602547758727	-0.172203145969508	0.777142200775724	0.945018349303776
Merged-chr5-43290045-3	chr5	43289572	43290572	+	894.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175937)	TTS (NM_175937)	-54718.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	2.71746175597563	2.70438550282846	2.62044469811067	2.8127166473558	2.59630661959315	2.88094672297173	0.425213788347356	0.570425335003228	0.869196267207969
Merged-chr13-52277385-4	chr13	52276888	52277888	+	922.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180647.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.40532629449667	2.30356179762296	2.60846122948327	2.47533072008005	2.35619790328197	2.36830581480614	-0.248111807504527	0.764239052301195	1
Merged-chr5-23618527-1	chr5	23618027	23619027	+	676.0	f1_balb.idr	intron (NM_001359174, intron 2 of 16)	intron (NM_001359174, intron 2 of 16)	-1956.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	2.67035518772016	2.46037610417089	2.75147758003962	2.74269061161194	2.2090685557336	2.6407319194264	-0.425705606030636	0.643892146031526	1
Merged-chr7-4427451-4	chr7	4426972	4427972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001290409, exon 6 of 6)	3' UTR (NM_001290409, exon 6 of 6)	18185.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	3.47374822901857	3.30552489531769	3.48052496830838	3.50549260312118	3.21290572012409	3.49758552382822	-0.052501318884151	0.930993034370392	0.984748096853363
Merged-chr2-144294150-2	chr2	144293650	144294650	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23246.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	3.3941807345148	3.21863888922265	3.59987038129565	3.49457242641484	3.67374969994299	3.61824993453105	0.713320103763871	0.230535541141	0.626341302534829
Merged-chr18-66458581-4	chr18	66458081	66459081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-23.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	8.98041782958773	9.28775981130843	8.56931917361849	8.55794404312863	8.93772281014456	8.48523993496103	-0.416789486630244	0.121276136981426	0.465716485413998
Merged-chr18-61632509-4	chr18	61632021	61633021	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7132.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	4.42116728599354	4.27545472741751	4.2768533256281	4.60039663419356	4.29565605507685	4.39079056444112	0.270306655158199	0.548202896043024	0.85958743025568
Merged-chr6-29858958-2	chr6	29858458	29859458	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171001)	promoter-TSS (NM_001171001)	-638.0	NM_001171001	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	2.70364592512571	2.89401772235932	3.12286741954554	2.71421588511791	2.77737485240323	3.13981987202289	-0.133847964292748	0.858833176998775	0.96702230262239
Merged-chr8-11453935-2	chr8	11453435	11454435	+	895.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011227)	TTS (NM_011227)	-23994.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.21654679611669	6.45465765660666	6.67539466051412	6.46415208678524	6.72701687056136	6.62300777240082	0.255483375972444	0.369740704100659	0.754342005045842
Merged-chr3-142395711-4	chr3	142395213	142396213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190855)	promoter-TSS (NM_001190855)	-17.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	8.16520647520537	7.95374201547958	7.80815912799351	7.87687807569365	7.65309819328675	7.86451149237116	-0.272187179371941	0.240563746211291	0.637600439407184
Merged-chr14-65098147-4	chr14	65097632	65098632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018788)	promoter-TSS (NM_018788)	-26.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	6.68153467438706	6.68696695561343	6.66134363857855	6.5978198264736	6.5100904938519	6.75135319588191	-0.0983566898407079	0.702508414822504	0.921908665861083
Merged-chr4-118425629-4	chr4	118425158	118426158	+	945.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2435.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	4.67267926049595	4.65136836561181	4.54159770742852	5.00069172765301	4.92785837922982	4.92841479953084	0.738314347832862	0.0599267697606211	0.316938070186345
Merged-chr1-180813657-4	chr1	180813152	180814152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008210)	promoter-TSS (NM_008210)	-47.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	7.64110716033077	7.54480598119726	7.613552815224	7.69431087888469	7.50988549891325	7.80893581853666	0.102795449048755	0.651516270708545	0.902848924330689
Merged-chr15-93294682-4	chr15	93294182	93295182	+	880.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	Lx7|LINE|L1	-19503.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	5.05968374029547	4.76130504204994	5.32184536847217	4.93024320485016	5.09888117485243	5.04013814978275	-0.0608863168925539	0.878087652669684	0.971816559882595
Merged-chr6-116133239-2	chr6	116132739	116133739	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	60135.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	6.05867719406324	6.34094026551133	6.13976888314288	6.23814086582277	6.28340328525613	6.68324599388619	0.361982220021706	0.230437343603363	0.626271502694957
Merged-chr12-106010195-4	chr12	106009711	106010711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011705)	promoter-TSS (NM_011705)	-52.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.42164491502705	5.81839543745602	5.72103961186572	5.89471155613125	5.59485021061066	5.4085276457046	-0.0185399767002592	0.957731524206504	0.989969855526119
Merged-chr9-48532492-1	chr9	48531992	48532992	+	549.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	37149.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	5.91986096092975	5.89612905378246	6.01452233145667	5.65986043059376	5.68883988156062	6.03159372516684	-0.263930304891791	0.397880859294416	0.774623503151706
Merged-chr15-75929826-4	chr15	75929333	75930333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031201)	promoter-TSS (NM_031201)	-15.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	5.23357006606487	5.40283206175903	5.53717948439049	5.13200709097912	5.15143972588143	4.96552589964076	-0.601917875924653	0.0948857033137134	0.410676182123665
Merged-chr16-24629418-4	chr16	24628926	24629926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-92429.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	8.42796043728137	8.52733052744296	7.73450450504461	8.07301509273362	8.41514981515425	7.7238387049336	-0.243444898955644	0.42619675792823	0.793710381237515
Merged-chr10-95817592-4	chr10	95817083	95818083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-123080.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.72587091764675	5.62550809137122	5.99801471930871	5.52594535919429	5.46784847437432	5.6020723984453	-0.470091837408448	0.150490467552432	0.517334494681425
Merged-chr13-37678148-4	chr13	37677651	37678651	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147887.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.2828736519238	6.36059744180611	6.16009372628995	6.26739630913894	6.17575131102926	6.17754075704043	-0.115965570940911	0.676154810917196	0.912421384593547
Merged-chr2-13544499-4	chr2	13544012	13545012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	GC_rich|Low_complexity|Low_complexity	152.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	7.6748134870919	7.69959859067157	7.40250898529885	7.57436353097113	7.64462831361217	7.42675210573295	-0.0715897042572888	0.760322209891825	0.940713888667682
Merged-chr4-108780132-3	chr4	108779615	108780615	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347163, intron 1 of 18)	CpG	973.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	5.71387119381765	5.77644867701651	5.44885667551078	5.02064542885401	4.59908564016071	5.01662160021735	-1.59427068589225	2.55836626101978e-05	0.000902019236639551
Merged-chr19-29385127-4	chr19	29384622	29385622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 6 of 6)	intron (NM_021893, intron 6 of 6)	17684.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.28008307190489	6.07548993546316	6.10442870731961	6.28051189052194	6.37226639970856	6.14298970785295	0.197013871670056	0.488999720923989	0.829458075453696
Merged-chr11-118147405-5	chr11	118146925	118147925	+	963.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18206.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.84513941800982	6.85307286608338	7.2485130013946	5.97884873447862	5.81521834464438	6.33704712804918	-1.52527594618436	5.70820164593212e-07	3.31218997597434e-05
Merged-chr14-19419374-4	chr14	19418905	19419905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	183182.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	6.15387843012251	7.46551005325125	5.19322283996461	6.36566259582155	6.38254156301831	5.30909128472811	-0.803371700726746	0.50165528306916	0.835833270717604
Merged-chr10-17629920-4	chr10	17629422	17630422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93306.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.15636751533302	3.7788464830922	3.88762540503693	3.60370498406409	3.79950646296535	4.09747973473059	-0.340608200073215	0.538341876440715	0.855082481099512
Merged-chr3-137848551-4	chr3	137848044	137849044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15943.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	5.31626664553817	4.9105927957911	4.96612726962081	4.59858374035531	4.44524899197947	4.46392489878066	-1.32973884514915	0.0014589848483307	0.0242217101476259
Merged-chr11-120784663-2	chr11	120784163	120785163	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	148.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	5.54823101022553	5.32694805174095	5.44683687907604	5.63759483170757	5.09170658822126	4.83555018844778	-0.398111835302133	0.327927345504531	0.72010817392564
Merged-chr4-123941101-4	chr4	123940602	123941602	+	819.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23669.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	2.41946195686365	2.54683235395395	2.64108709188428	2.51728707157421	2.49544514523235	2.52723878304163	-0.135806222554936	0.862334427618157	1
Merged-chr13-92635865-3	chr13	92635354	92636354	+	620.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	24716.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	3.42547160322315	3.59616509567232	3.73068874907614	3.70504587552788	3.37782557248972	3.42738430791982	-0.264767263898026	0.654500842479956	0.903850531941516
Merged-chr6-47920660-4	chr6	47920184	47921184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145881, exon 1 of 5)	5' UTR (NM_001145881, exon 1 of 5)	116.0	NM_001145881	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	5.19154224974902	5.72398724315125	5.92523974948777	5.41431260918454	5.39941865303069	5.63064920953302	-0.304569738861843	0.416979247339845	0.787757906017933
Merged-chr4-121014756-4	chr4	121014253	121015253	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	2494.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	5.59118230325074	5.67499172604817	5.57268924110821	6.06290351128446	5.86921707086009	5.57712469693824	0.442294331368927	0.174813982224566	0.554362659893352
Merged-chr7-97842937-4	chr7	97842458	97843458	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011035)	promoter-TSS (NM_011035)	19.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.13628669430771	4.85093051594809	4.9276763460018	5.29487792854494	5.63233796861753	5.48721361832042	1.01772493376723	0.00563360206513449	0.0666483868264274
Merged-chr6-72753037-4	chr6	72752545	72753545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	36000.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	5.65274509287821	5.15886155326706	5.72475840292878	6.17473874185258	6.14019317830973	5.67891672350402	0.893094037065675	0.0131032706437268	0.121468019577008
Merged-chr6-30303316-3	chr6	30302794	30303794	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	1245.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	7.04151354116684	6.76529545918026	6.66484414814749	6.9952014640397	7.10280137682935	6.88231631235586	0.246973788932182	0.346141882711536	0.734515828466387
Merged-chr6-115469458-4	chr6	115468957	115469957	+	862.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47391.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.67974890669404	5.59213864275995	5.66242973793464	5.55077945135746	5.58873268745142	5.69802065734954	-0.0640789112280913	0.838827757725687	0.962600229831317
Merged-chr17-17392972-4	chr17	17392479	17393479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 9 of 9)	ID_B1|SINE|B4	-9707.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	7.31487364048235	7.82439242073467	7.44570130831335	7.60776297163554	7.87654085098957	7.55410696983943	0.203702068013928	0.437350504136009	0.7999265985569
Merged-chr5-115155977-4	chr5	115155465	115156465	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2211.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	4.50510055081861	4.50540206881114	4.46144378188967	4.47594384049899	4.48650617838197	4.68919335366855	0.134641794193725	0.750542555687631	0.937564211523741
Merged-chr15-84245486-2	chr15	84244986	84245986	+	849.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	13443.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.58729623240103	5.80626665901607	6.04229435051799	6.29650019847878	6.29967450754301	6.39874177565512	0.887186154966468	0.00331572888130687	0.0453376512259943
Merged-chr13-116951549-4	chr13	116951056	116952056	+	966.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	73960.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.85611492955534	4.03003889227618	4.36286911682776	4.82979959189427	4.84572350666431	4.71833167596053	1.86515894227882	6.52848920584942e-05	0.00197679232110742
Merged-chr8-122438161-4	chr8	122437663	122438663	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 5 of 10)	intron (NR_028354, intron 5 of 10)	-5223.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	4.59271174976311	4.5152556328005	4.95473549640049	4.525087113696	4.22471054143153	4.23372924740551	-0.887065138802032	0.0539339677696737	0.297929836975151
Merged-chr6-119479329-4	chr6	119478823	119479823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133940)	promoter-TSS (NM_133940)	-345.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	6.68687803006532	6.12903939597017	6.46088844320073	6.71830778462359	5.91938069602534	6.48491275797328	-0.0529718402543569	0.879656443605539	0.97219374767077
Merged-chr10-84441263-4	chr10	84440742	84441742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-771.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	7.61850485109453	7.95889511214478	7.67259782058282	7.75043499232442	7.76971861351663	7.62656750181804	-0.0617732030644707	0.790838360567864	0.949636019080019
Merged-chr8-116731934-2	chr8	116731434	116732434	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	1057.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	3.15012248215306	2.8773801753229	3.17186347752922	3.31795068944944	3.15557226076524	3.30039023563761	0.806018739043471	0.223382957820639	0.618087468987021
Merged-chr7-132860406-2	chr7	132859906	132860906	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	1181.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	5.95065323062098	6.07698549116851	5.97154983788275	6.1595602789954	6.25693220769476	5.98519837407797	0.248160695010378	0.394702422003851	0.772514857254462
Merged-chr8-11555376-4	chr8	11554880	11555880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-382.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	7.27786572008327	7.36838100351035	7.22749951466103	7.1259613420951	7.26310231166969	7.4889629405157	0.000516241087515027	0.99830068636825	0.999610145866128
Merged-chr6-116668894-2	chr6	116668394	116669394	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	4942.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.11517682028233	6.38852088229224	6.43261884033518	6.83395661166604	6.924582775313	6.74004670260349	0.212455522545132	0.502663735975294	0.836579809245384
Merged-chr6-17598685-4	chr6	17598201	17599201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38309.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.42006183410321	4.50995583833091	4.37005315385149	4.62953785414024	4.67872788577083	4.94430970504755	0.750995388192638	0.077453804106749	0.367138988463133
Merged-chr6-54967676-2	chr6	54967176	54968176	+	835.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	3985.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.30935491650405	4.06357382862086	4.38336915636317	4.37339535687116	4.35718994499813	4.92392155348209	0.800800336516263	0.0983547474183299	0.418164724499739
Merged-chr12-81860244-4	chr12	81859747	81860747	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018814, exon 1 of 36)	5' UTR (NM_018814, exon 1 of 36)	217.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	6.16125462459108	5.87953536232755	5.74417138003735	6.21447607158535	5.37163750892294	5.72537604880758	-0.222292213346963	0.556216664912945	0.86357390983939
Merged-chr5-101768098-4	chr5	101767537	101768537	+	835.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	2907.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.15712862418918	3.88049122297436	3.99227393567235	4.50698071161619	4.46545424217367	4.56017325562318	1.33812844158884	0.00450436066993144	0.0568479967577212
Merged-chr17-50122679-3	chr17	50122161	50123161	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	67836.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.77221048361979	2.79579152089868	2.8171713942499	2.80609052004438	3.00857911896422	3.06740583093926	0.838569922843851	0.234854739308356	0.630984339781408
Merged-chr16-30066508-4	chr16	30065999	30066999	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008235, intron 3 of 3)	CpG	1142.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	7.17309908156095	7.44641160512197	7.18837717896263	7.21055242463566	7.31164718751112	7.15918436802299	-0.070618766608585	0.770491345252658	0.943392092118189
Merged-chr19-23758358-4	chr19	23757865	23758865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-511.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	4.86832361275445	4.86569333331442	5.18625823107577	5.04703153358189	4.92876451663051	4.79641741151561	-0.0840118700391373	0.829615437216717	0.960125413857885
Merged-chr3-138530129-3	chr3	138529598	138530598	+	918.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	2830.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	3.81961821163475	3.60742787819702	4.00652286463785	4.15441411103242	4.39559380514344	4.34481219668544	1.45896416401663	0.00438922773707536	0.055818257916333
Merged-chr6-134079772-4	chr6	134079251	134080251	+	859.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	44051.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.2741478263305	4.31756379831371	4.59788393678376	4.35295101050045	4.23074968679648	4.73538245265111	0.126543000453101	0.787966215511179	0.948776817409006
Merged-chr11-98026668-3	chr11	98026174	98027174	+	976.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-36.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	8.52288535021958	8.78302927675023	8.49875136950502	8.4309895730806	8.72787976512439	8.28838253216569	-0.150314356121325	0.519956793702551	0.846082496556008
Merged-chr11-113173014-1	chr11	113172514	113173514	+	834.599976	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	28824.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	3.57883605431229	3.47589744063038	3.86738052659519	5.57153947594126	5.71254747211485	5.45740507941076	7.88736728082428	5.81196690336544e-11	8.10053839355497e-09
Merged-chr16-31936980-2	chr16	31936480	31937480	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	L1Md_F2|LINE|L1	3129.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	3.83116879729535	3.73622343748674	4.02244031088956	3.91351719762837	3.83150848454622	4.30341244378906	0.486393975798236	0.360972691768223	0.746938274913623
Merged-chr17-35394047-3	chr17	35393538	35394538	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_051981)	promoter-TSS (NR_051981)	-61.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	4.56490919234514	4.33478275313394	4.33303268621091	5.5599134277795	5.55557001686219	4.91103287915965	2.13573194597204	1.06784943709387e-06	5.72510412124399e-05
Merged-chr8-119558853-4	chr8	119558359	119559359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019709)	promoter-TSS (NM_019709)	-98.0	NM_019709	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	6.62836894927541	6.30944808607622	6.71594093242829	6.98879441078805	6.55982714981686	6.80473716811963	0.373233592685116	0.196433827404371	0.58423678218776
Merged-chr6-87543504-4	chr6	87543026	87544026	+	850.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-10267.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.60261164955005	5.21456451286083	5.72121000282075	5.97350886755	5.77492464642956	5.88096688124915	0.652855601517403	0.0536771608217464	0.29702528414284
Merged-chr8-25746000-3	chr8	25745500	25746500	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	RLTR31D_MM|LTR|ERVK	8280.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	3.93636976336913	4.03919192005792	3.9727610156536	3.59768410038665	3.95490493757402	3.73597375485397	-0.63347800895898	0.238350708239904	0.6350320428813
Merged-chr18-46536763-4	chr18	46536219	46537219	+	916.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-10748.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	4.99926716458966	5.32751409004729	4.86250217609456	4.96788508791185	5.22643406956158	5.24679627679159	0.130613110745587	0.737540744513928	0.933775317218453
Merged-chr17-57357803-4	chr17	57357319	57358319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-867.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.20443665056991	5.98429741219617	6.18686236486862	6.58642733746728	6.37374489498924	6.460346781432	0.578334733381823	0.0391354629477097	0.245338928723953
Merged-chr2-167770530-2	chr2	167770030	167771030	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79353.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.54242631634769	6.25585900465813	6.46499271612554	6.77767605831256	6.66569398206687	6.8015256158114	0.512908232248476	0.0545656729555296	0.299986819642134
Merged-chr14-30623863-2	chr14	30623359	30624359	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	2349.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.12348655158851	4.06738157115026	4.22378458926373	4.28213544012738	4.18685022100089	4.10527367887727	0.172433171901372	0.712911988899959	0.92531822516521
Merged-chr13-95944056-3	chr13	95943548	95944548	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52126.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.74930798928835	2.70760982101212	2.68989185077051	3.07526214271814	2.65872605149413	2.95248133667345	0.949597704592297	0.205033387076625	0.595694220420628
Merged-chr11-114677249-2	chr11	114676749	114677749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1781.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	4.44587758064771	4.22217521573025	4.41509528821539	4.56711480664347	4.0632312037935	4.21225444328002	-0.171633833583267	0.721420740879021	0.928478268376254
Merged-chr12-55230703-4	chr12	55230202	55231202	+	765.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100109, intron 1 of 15).2	CpG	224.0	NM_001100110	100101806.0	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	5.1994227440381	5.62708677971126	5.82325802158904	5.46143618607145	5.31888207182466	5.45134278471213	-0.305653035576878	0.402643419358419	0.778169663804428
Merged-chr6-119388456-2	chr6	119387956	119388956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	CpG	278.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	7.33820274449883	7.12840056819602	6.8202563911045	7.12516725838653	6.96633939728148	6.98265168950668	-0.14613478216332	0.580733549258674	0.873004591908289
Merged-chr11-54087895-2	chr11	54087395	54088395	+	690.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13029.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.43235107896479	5.2696489515479	5.35322615135044	5.13262024605804	4.9184941319654	5.0581482497999	-0.65651718407223	0.0661014390989423	0.335560279698907
Merged-chr10-88122651-3	chr10	88122112	88123112	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029249, intron 6 of 10)	RSINE1|SINE|B4	24329.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	4.14787363659238	4.47454997441576	4.31105131103247	3.5701029995905	3.32066329871095	3.7055158047052	-2.6912304860922	4.83269260439376e-06	0.000215382263645632
Merged-chr4-126259173-2	chr4	126258673	126259673	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2854.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	6.6711398613253	6.68711648363251	7.09244802073487	6.65025384778541	6.9691700150246	7.02666793038602	0.106892286731598	0.703480530774036	0.922108924938678
Merged-chr7-16257454-3	chr7	16256941	16257941	+	917.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B2_Mm2|SINE|B2	1897.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	7.17484023188002	7.15278220794921	7.36646967570836	6.561063682857	6.93588209272692	7.07228618791963	-0.545936570423584	0.0418430578114855	0.255905121048143
Merged-chr8-105374812-4	chr8	105374335	105375335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-546.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	3.64724715486444	3.47464541122093	3.5901058790607	3.67656262534448	3.80959257025727	4.00586184695871	0.876294197739592	0.112744200534833	0.448475926862145
Merged-chr11-114929292-3	chr11	114928813	114929813	+	712.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	5073.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.94048274260208	6.82475263488787	7.1862733766909	6.45703812641852	6.61972307480971	6.93798537121686	-0.476661908830517	0.0887592231307917	0.395516383991159
Merged-chr14-106681434-4	chr14	106680934	106681934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194914.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	4.23997637411594	4.53837329846646	4.26316030644275	4.43169743163245	4.19906204909586	4.46251900241067	0.00339436291844444	0.994141379155449	0.998918571480046
Merged-chr15-9071149-4	chr15	9070667	9071667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-93.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	7.041509598355	6.86225668688156	6.90512994086226	7.23620300805346	6.91618798719279	6.86040294069027	0.119058761771607	0.64614851473374	0.900928760057729
Merged-chr11-76202026-4	chr11	76201518	76202518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027773)	promoter-TSS (NM_027773)	-38.0	NM_027773	116972.0	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	2.69117456457334	2.46595650165672	2.81550539260644	2.52819483833552	2.39519108399342	2.32823187905015	-1.49928554813855	0.080442466092719	1
Merged-chr13-54303245-6	chr13	54302721	54303721	+	962.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-68128.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	6.022613699516	6.35355825660567	6.22336615873944	7.12770969811615	6.72365455929741	6.7847897089422	1.09311957814263	0.000154441374968702	0.00407443180989085
Merged-chr12-118301373-4	chr12	118300888	118301888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	52.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	8.33348898389572	8.66552038688346	8.21890814095421	8.21845685296768	8.55022434728142	8.20806965473492	-0.117717150895597	0.628422965078372	0.89369433716418
Merged-chr13-5777951-2	chr13	5777451	5778451	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	80141.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.51166086579459	6.39538015074875	6.30152344680309	6.22749267349182	6.23567813679482	6.30185811611601	-0.260968069212909	0.338093164828097	0.728000347830431
Merged-chr2-170132195-3	chr2	170131672	170132672	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-952.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.58866768426384	6.65631335779931	6.68851188378605	6.95414626924361	7.34074138168729	7.07820039087213	0.768217694001255	0.00303148782948155	0.0424445736912539
Merged-chr8-119814500-2	chr8	119814084	119815084	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	25995.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	5.23583984085827	4.8289933978525	4.97590119058531	5.01428778872475	5.2444334587761	5.30573614636893	0.3431397646233	0.37171439916416	0.755815136565724
Merged-chr9-98329775-4	chr9	98329263	98330263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33193.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	6.45321160617885	6.67425142507882	6.11774175214674	6.03042377293059	6.09737961540317	5.77338147532182	-0.772298255708335	0.0143417498612532	0.128801761732882
Merged-chr6-83906845-4	chr6	83906345	83907345	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-7508.0	NM_001166371	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	2.63481139154629	2.71158385648471	2.75557915781816	2.53309424452148	2.6791796560671	2.64342870889639	-0.432006356373232	0.566858777121169	1
Merged-chr2-91265155-4	chr2	91264668	91265668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	53.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	8.14592466095197	8.47921094394826	7.99909866628993	7.92793790661044	8.30652904539117	7.8714736281688	-0.242311355159099	0.345373525999085	0.73374724517199
Merged-chr12-73688624-2	chr12	73688124	73689124	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	103828.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.81502800606997	4.65193481458248	4.84022559987791	4.51424321474374	4.47163748713651	4.51442998524966	-0.647483917373515	0.116144209205721	0.455079356182438
Merged-chr19-57073008-2	chr19	57072544	57073544	+	590.833374	f0_balb.idr|f1_balb.idr	intron (NM_001103177, intron 8 of 21)	intron (NM_001103177, intron 8 of 21)	45980.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	2.95325920576267	2.90335097384315	3.01680482218078	2.87342755684368	2.89338909733155	2.7850500626927	-0.497757281248093	0.474951161237746	0.821727753368561
Merged-chr15-74919736-3	chr15	74919263	74920263	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35288.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.6507954906657	4.4015843811157	4.83976518903498	6.05538058865351	6.12709177021364	5.84638353851378	2.84756338641929	2.5138069823492e-14	6.35771584763867e-12
Merged-chr9-110466358-2	chr9	110465858	110466858	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	10336.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	2.42342545167741	2.38624775089529	2.74310502978087	2.32763082103692	2.20060214042947	2.87222784728124	-0.130508356803173	0.886810791030353	0.973794308941933
Merged-chr3-108383704-4	chr3	108383179	108384179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040560)	promoter-TSS (NR_040560)	62.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	4.07806686082685	3.97697959775798	3.83334351724066	3.95827451040199	3.78211632394552	4.09945727460552	-0.0851880951036207	0.868428925005925	0.969649687231864
Merged-chr8-123021933-3	chr8	123021419	123022419	+	809.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	20365.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.42493598363089	4.20086009476314	4.4533833120825	4.40856947871042	4.21124239568386	4.21090449654959	-0.210755933686988	0.645650739535139	0.900657290738149
Merged-chr4-136116483-2	chr4	136116021	136117021	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-27301.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.12288152802491	4.97399161019742	4.79308025385629	4.85659902962706	4.48567019459319	4.89708569336805	-0.513124591928492	0.214867430573996	0.608056632425298
Merged-chr17-78204629-2	chr17	78204106	78205106	+	889.291626	f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	4358.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	2.46938571707442	2.51102160417744	2.54994530635469	2.7509594436506	2.58654663341327	2.98549848867255	1.51763573184839	0.0554265059160448	0.302759056276653
Merged-chr5-25101372-4	chr5	25100875	25101875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145401)	promoter-TSS (NM_145401)	400.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	6.39622862352598	6.51931790878593	6.856354193435	5.5154488887499	5.47272390481731	5.64677031941166	-1.82804561008064	5.13666390613649e-09	4.98729907003273e-07
Merged-chr5-115635706-4	chr5	115635200	115636200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	3713.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	4.4112948155445	4.34531427926753	4.58628801667821	4.67515147556285	4.49741490285169	4.25974037158664	0.128523751474	0.774411255801108	0.944467091324401
Merged-chr1-9630246-4	chr1	9629696	9630696	+	659.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 1 of 4)	intron (NR_015470, intron 1 of 4)	896.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	4.29901641664697	4.08885219166378	4.46308598780521	4.23229269465932	4.3299150582563	4.22903835693604	-0.0416720794924839	0.928859382538606	0.983906798062857
Merged-chr5-92494426-2	chr5	92493926	92494926	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	11231.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.2673543546402	4.49012520879425	4.55042811646489	4.28180057718744	4.22453173312086	4.61581467924638	-0.163330444038923	0.722457030640763	0.928821151735982
Merged-chr8-40609912-3	chr8	40609379	40610379	+	831.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24913.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	4.36559866476535	4.28038484994825	4.6039390339703	6.72367626814798	7.04005634765623	6.56810952435798	5.05634191653457	1.26014625094967e-30	8.73785410408503e-27
Merged-chr7-104604950-2	chr7	104604450	104605450	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7771.0	NM_146820	258817.0	Mm.377706	NM_146820	ENSMUSG00000051182	Olfr655	MOR38-1	olfactory receptor 655	protein-coding	3.52326210241806	3.57154814955036	3.39701871643365	3.37633770940627	3.2888206097275	3.52337459224034	-0.419419485234566	0.478143481945114	0.823624523176113
Merged-chr19-43531552-1	chr19	43531052	43532052	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-6947.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	2.23499411146217	2.03044386382242	2.26804378273855	2.05131756788791	1.89765760360283	2.07985038444892	-1.36129102303141	0.156876432125196	1
Merged-chr8-108387353-4	chr8	108386847	108387847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197330.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.56661792427034	3.65580759383701	3.95705603423645	3.85735694346717	3.43236579504271	3.51917778656289	-0.385862614165962	0.513057649250475	0.842304142983516
Merged-chr7-132620180-4	chr7	132619669	132620669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	9526.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	6.44506532682063	6.46509073784335	6.46695816747514	6.65356563274837	6.37803960837284	6.59560320903133	0.13382867579642	0.617724930474014	0.888915970314947
Merged-chr2-45104553-6	chr2	45104167	45105167	+	875.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	5610.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.92182224701394	5.77737639239571	6.12655845092299	6.16625415475646	6.07947194016532	6.05797481643049	0.283624100611782	0.341151115766629	0.730686899066382
Merged-chr15-30616558-3	chr15	30616092	30617092	+	794.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-422534.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.86484460588597	4.12312143618677	3.40925924008858	3.55860499306762	3.57393330748654	3.66164290816559	-0.805153531422086	0.185075643968924	0.569139411019522
Merged-chr4-134186555-2	chr4	134186054	134187054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144527, intron 1 of 13)	CpG	531.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	6.70631598100076	6.79493711858403	6.80951184433104	6.96537660166894	6.71996434173929	6.53855254955959	-0.0161764915799965	0.951477288908926	0.98882810535857
Merged-chr2-25054440-4	chr2	25053927	25054927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	48.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	5.16676554396846	5.12547957554521	4.93972365112195	5.23214344653956	5.14200677522473	5.00580530525279	0.0955357096656396	0.794441688137696	0.950711250903359
Merged-chr5-100585691-2	chr5	100585191	100586191	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-13486.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.19891394544121	4.45834500292084	4.20086206459279	4.75796923028157	4.42322839593373	4.4119779787666	0.62133943862148	0.177785568590879	0.558908175582207
Merged-chr2-52523290-4	chr2	52522816	52523816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	35295.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	6.50090067951539	6.48872526061853	6.42423972385747	6.46552309908542	6.5222764278535	6.77982410296705	0.183421020605706	0.494764232994623	0.832098209532918
Merged-chr14-20640201-3	chr14	20639693	20640693	+	699.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16347.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	4.45775654668787	4.41900414190667	4.46884745395101	4.17560000350082	4.11441291318685	4.41095031698658	-0.581163865835625	0.198747573892061	0.587160948993809
Merged-chr4-126819477-4	chr4	126818985	126819985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	65715.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	6.3118458054308	6.38848449332163	6.46083085272454	6.20195160792293	6.50165040361403	6.53734156914218	0.0599446547322446	0.829733072920005	0.960134151531511
Merged-chr3-116638147-4	chr3	116637627	116638627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23540.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	6.48706579507065	6.38282237260118	6.64131315120509	6.7143819299337	6.76577860225812	6.83677714857393	0.430102592811612	0.0976167086415977	0.416672837172546
Merged-chr11-102230202-4	chr11	102229685	102230685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284250)	promoter-TSS (NM_001284250)	-13.0	NM_001284250	15184.0	Mm.22665	NM_010412	ENSMUSG00000008855	Hdac5	AI426555|Hdac4|mHDA1|mKIAA0600	histone deacetylase 5	protein-coding	7.60620417418973	7.52893781206495	7.3095120161982	7.5798375961542	7.44523907277325	7.29656210731794	-0.0649366694862865	0.786127655607619	0.948358946382677
Merged-chr8-70901227-1	chr8	70900727	70901727	+	589.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-3784.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	2.76481762904414	2.77572398737529	2.97116670344778	3.24128476109753	3.48129091958466	3.69730832940411	3.17287865761234	4.30417384717633e-05	0.00139408990843071
Merged-chr4-41740986-4	chr4	41740481	41741481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286605, intron 1 of 3)	CpG-9828	378.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	5.64562883606352	6.12892801191833	6.25215566166889	6.09579767676728	6.07339295805793	6.04360644990438	0.0760646851227768	0.81391423689592	0.955984497572397
Merged-chr6-134095875-3	chr6	134095350	134096350	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	60150.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.13245941257162	3.27877214103651	3.1336577096706	3.35748611035469	3.25235840968225	3.43391001240206	0.646835247650068	0.30049859010352	0.697311691851564
Merged-chr10-118981610-4	chr10	118981094	118982094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54451.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	5.78675464556011	5.16882042176352	5.30840267045274	5.38883611434911	5.23979598797621	5.09764177553405	-0.402409761294624	0.29761901923564	0.694358148116057
Merged-chr13-117237346-4	chr13	117236840	117237840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	16767.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	2.51952624958327	2.38598234466372	2.5658156796877	2.34897583849687	2.42647592973737	2.38562475702019	-0.637041062751631	0.434311593619889	1
Merged-chr5-96164111-6	chr5	96163535	96164535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2045.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	7.27330325263137	7.21441709936938	6.59716316077632	7.05344912635289	7.10991811737608	6.52308553624555	-0.214955008180044	0.499707248842348	0.834687375989398
Merged-chr7-27179659-2	chr7	27179159	27180159	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-776.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	4.16414034017245	4.17718186235179	4.59564566677434	4.21635954508944	4.24757618368396	4.73135215097742	0.239226443758524	0.628555715050341	0.893783616313365
Merged-chr4-99198689-2	chr4	99198172	99199172	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	B1_Mur1|SINE|Alu	4525.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.68016455095724	3.7971336270144	4.52202499506803	4.60566716763064	4.54456508516291	4.37433399166703	0.300977547467934	0.577750889105697	0.87219514592351
Merged-chr7-43309261-2	chr7	43308761	43309761	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	4039.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	3.1816881402869	3.35472023185255	3.52339836137207	3.41132610751699	3.15751784180063	3.38178194021788	-0.149515930246432	0.811299178791181	0.955196214521197
Merged-chr13-45889152-3	chr13	45888651	45889651	+	927.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	75840.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.04895752305096	5.1324468699656	4.69774917254231	4.5124255994917	4.052741918868	4.36748809757647	-1.61181252097721	0.00040847176274709	0.00893483660217137
Merged-chr11-49201270-3	chr11	49200771	49201771	+	900.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	4.31221824915624	4.2264585712053	4.59111390058872	4.27693536640836	3.98392406005753	4.38083132564817	-0.436555890501308	0.365249791062956	0.750422106947654
Merged-chr11-96974475-2	chr11	96973975	96974975	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	B1F|SINE|Alu	3213.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	6.27663430079368	6.59449411014587	6.50605806041041	6.09715427284522	6.65240007045501	6.67962068870004	0.0619400117702014	0.841342500515581	0.962909549034125
Merged-chr2-90578669-3	chr2	90578188	90579188	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1959.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.54639193498376	7.33708809847549	7.38188381408169	7.36005169835651	7.59419472973106	7.46011357223235	0.0766118304351234	0.743428226387441	0.935615824630138
Merged-chr4-132505475-4	chr4	132504981	132505981	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	4975.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.32076384305557	5.26495239036601	5.72259964829269	5.5913227964391	5.34762467313808	5.46683972111103	0.0594431112782707	0.867097744283542	0.969281921467367
Merged-chr11-101627057-5	chr11	101626536	101627536	+	808.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-913.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	5.92702157379074	6.00821033508685	6.05918058714921	6.24351936044776	6.18947836872768	5.93249794372686	0.242500179429702	0.408814924258156	0.782383854304252
Merged-chr10-57743141-2	chr10	57742641	57743641	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41782.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	2.81061661155235	2.60603780117655	3.05953267611729	2.75576230097261	2.73151110730891	2.58867262973492	-0.709906180905791	0.361447205333598	0.747398088006909
Merged-chr8-25840765-4	chr8	25840280	25841280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	7.0	NM_001359012	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	6.10703976785515	6.21336072747513	6.15968287920347	6.07276089978709	5.87205552724298	5.87633138377403	-0.373981594616709	0.198055545404007	0.586261324154272
Merged-chr11-22982246-4	chr11	22981720	22982720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144514)	promoter-TSS (NM_144514)	64.0	NM_144514	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	6.05887763246632	6.52131468442168	6.31549910401279	6.27405149940194	6.51632217170202	6.21213425081437	0.0572467239635825	0.849676724880041	0.964686793473289
Merged-chr11-75468451-2	chr11	75467951	75468951	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027249, intron 1 of 4)	intron (NM_027249, intron 1 of 4)	401.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	3.28468509801085	3.14414205659832	3.42915717871574	3.0198956328884	2.91615816269458	3.11654941811041	-1.20914683228869	0.0699758244846588	0.34633288149652
Merged-chr18-5834624-4	chr18	5834132	5835132	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241985.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.52849991052362	3.99479427312299	4.16344474980076	3.80863649452341	3.97028996212352	4.23011169042902	0.273069122538729	0.631801641096564	0.895284049434373
Merged-chr17-29434392-2	chr17	29433900	29434900	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-56645.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.23240144062455	4.15310868497469	4.13301287116011	4.67770231893013	4.67247766152487	4.44012414992651	1.11825618706906	0.0121134013506396	0.115069325902598
Merged-chr17-33685467-4	chr17	33684965	33685965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-7.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	8.71048274690995	9.31707656029525	8.47946703739701	8.63667802856233	9.01355823702745	8.60588461050726	-0.170406192506926	0.551358388465899	0.861159830076033
Merged-chr15-97825194-4	chr15	97824691	97825691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	6576.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	7.12268774883481	7.01482990661223	7.05994522723321	6.38124398735233	6.32765791871865	6.07008167839115	-1.24723313294823	2.93408780569049e-06	0.000139349074278478
Merged-chr1-132316061-4	chr1	132315519	132316519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028778)	promoter-TSS (NM_028778)	-106.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	7.49666266895984	7.70735717336754	7.51162909424836	7.2486849256404	7.43263272142595	7.59728579860864	-0.216915677354478	0.36445258559545	0.749825494229833
Merged-chr16-10992245-4	chr16	10991750	10992750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	871.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	8.9615383100248	8.97302030283419	8.67829323227594	8.6290218743555	9.12766843649509	8.42346056642859	-0.150988882354002	0.563645020299551	0.865992481769395
Merged-chr13-12369317-5	chr13	12368802	12369802	+	828.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26073.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	5.61688344264907	5.84793336965366	5.15167507796697	5.28805170747265	5.52130211649501	5.06603534594725	-0.50827331341342	0.196801736144419	0.584754678471847
Merged-chr9-39910141-4	chr9	39909636	39910636	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146613, exon 1 of 1)	exon (NM_146613, exon 1 of 1)	331.0	NM_146613	258606.0	Mm.377588	NM_146613	ENSMUSG00000095390	Olfr229	MOR171-14|Olfr229-ps1|Olfr973|Olfr973-ps1	olfactory receptor 229	protein-coding	3.12996848590879	3.14721506662231	3.11410424833436	3.05130811398095	2.734676964169	2.94639121308974	-1.02963440959816	0.141994176583556	0.503045315568694
Merged-chr5-21645858-4	chr5	21645355	21646355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177076)	promoter-TSS (NM_177076)	-129.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	5.04748025587048	4.92801951275441	5.22658485462442	5.38115486229498	5.22935332352864	5.62598263770062	0.70476618850076	0.0552141915568228	0.302055387972394
Merged-chr18-39653042-4	chr18	39652538	39653538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120459.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.96066631774162	4.9512564195611	5.10881925557154	4.82204403372512	4.98096987933769	5.35278321295786	0.120155149481851	0.759402339668101	0.940414779722338
Merged-chr9-114870268-3	chr9	114869714	114870714	+	895.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-26062.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	3.11604980263512	3.17060392556986	3.24777723079803	3.03888809679039	2.86149691221853	3.26406125776005	-0.532088500134999	0.431025794045064	0.796627952450168
Merged-chr1-121440802-4	chr1	121440293	121441293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 3 of 23)	MTD|LTR|ERVL-MaLR	9726.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	5.60935588118161	5.62541767752307	6.10895604003688	5.51708013316692	5.28900380282357	5.94439260632515	-0.353587879997971	0.347057903188004	0.735199858635661
Merged-chr11-107244274-2	chr11	107243774	107244774	+	949.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-54893.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	4.25824961446369	4.13407341164229	4.11933248276586	3.85992992199049	3.95903949896562	4.14123749197663	-0.548858003502416	0.261457258955315	0.659215865138495
Merged-chr17-87246027-4	chr17	87245534	87246534	+	893.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19913.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	6.63139554606721	6.87729882121325	6.74922778164983	5.89384461739068	6.03471495379764	6.10083738287711	-1.22703922614192	9.88777943316473e-06	0.00039650233786736
Merged-chr7-19323263-2	chr7	19322767	19323767	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13222.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	3.39297339862913	3.20142311897479	3.10163368219613	3.42181038973785	3.34345081111424	3.35537950729311	0.518132954762658	0.408232214327109	0.781982251625038
Merged-chr19-46528778-6	chr19	46528225	46529225	+	963.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27077.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.69178988996785	5.40666510315061	5.34593163857685	4.66136717566503	4.39606753252738	4.60306356979979	-2.07610561340114	1.772677734704e-07	1.1781227551857e-05
Merged-chr13-94286336-3	chr13	94285880	94286880	+	797.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346609)	promoter-TSS (NM_001346609)	-549.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	4.25648789595361	4.33001539592052	4.18385836421949	4.53402145218582	4.20611022977639	4.34559063847748	0.273682906695763	0.551881238962004	0.861540020511223
Merged-chr11-117830063-4	chr11	117829552	117830552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4038.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	8.92343515915014	8.77710844572766	8.43033665006167	8.68825073685927	9.08023649924841	8.3310113055246	0.0188785534011483	0.945113985722792	0.987875414328125
Merged-chr18-31918739-6	chr18	31918193	31919193	+	968.4097289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6790.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	4.70528638459224	4.74511788969621	4.66573089266531	4.83758241318568	4.65423185837958	5.05665185287613	0.319039643203169	0.43295138065979	0.79758551656855
Merged-chr11-116621451-4	chr11	116620970	116621970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	2782.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.8121595693271	6.55746629146437	6.27245395814974	7.02049806948869	6.79239574564245	6.45744089124249	0.327087596524695	0.285442098999687	0.682933641197479
Merged-chr10-71353903-3	chr10	71353409	71354409	+	972.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	6146.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.11583833740857	4.68089757492108	4.9997869781802	4.77367058726627	4.88685037619039	4.60028968686271	-0.390378970778474	0.347563055364624	0.735652974422286
Merged-chr11-63046555-4	chr11	63046043	63047043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15116.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	8.78896762064981	9.06167579027776	8.46241456687788	8.79726544002998	9.08839716267197	8.33298189074915	-0.0211238823460973	0.940180919630785	0.986792088790777
Merged-chr6-25798408-4	chr6	25797896	25798896	+	856.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133931, intron 3 of 17)	intron (NM_133931, intron 3 of 17)	10830.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	5.2365600321557	5.40559803497656	5.18106747419731	5.02044870526339	5.10258256690825	4.99980358358813	-0.490179888479838	0.172950373142664	0.551687207865922
Merged-chr13-115958568-4	chr13	115958053	115959053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351135.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	5.02454199651347	5.20997397730963	4.72254803947314	4.7174505543324	5.12293375026802	4.83122325593413	-0.214581864650259	0.606624124948185	0.884240420935614
Merged-chr8-69996526-4	chr8	69996026	69997026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145596)	promoter-TSS (NM_145596)	-142.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	7.79118073601438	7.7347040139947	7.39195942380655	7.71507109332598	7.63453133997392	7.74363819277457	0.0530265765105771	0.822380451459652	0.958041123079214
Merged-chr7-19749773-4	chr7	19749278	19750278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-205.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	5.88179982524858	5.68482729560231	5.88118462843711	6.05976812031686	6.14172301397849	5.89362123780604	0.402021909783083	0.183360503885883	0.566491618839527
Merged-chr4-128719514-2	chr4	128719014	128720014	+	810.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-8057.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.44560082715884	6.19453693015034	6.1369659795487	6.81044536776109	6.83307233301017	6.22117027232047	0.631717122969696	0.0421067555246994	0.256957749446218
Merged-chr16-10968184-2	chr16	10967684	10968684	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	ID_B1|SINE|B4	24937.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.00899307755295	3.96323405247721	4.5042131592448	4.26222958176986	4.25039698025116	4.6429234511856	0.588072297347997	0.246126104772765	0.643265714707881
Merged-chr11-3194798-4	chr11	3194284	3195284	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.95623072897667	6.22166935999764	6.38640624946721	6.19671512157755	5.70064797144096	6.86172142761567	0.232817481642246	0.552745395352745	0.861902455989491
Merged-chr6-28482389-4	chr6	28481892	28482892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	5.33956628342708	4.92952179066753	4.95924334600929	5.50233848808095	5.36095516613378	5.1369473067502	0.506615282042231	0.184481302135445	0.568193669976537
Merged-chr7-67374131-4	chr7	67373612	67374612	+	924.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.16412103191988	7.35563775005661	7.29279890642637	7.08006946578794	7.36862749366299	7.2470373598312	-0.0477200222393382	0.843717549943361	0.963622916593135
Merged-chr8-84662886-4	chr8	84662363	84663363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-11.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	7.85441102829325	7.76971443731128	7.81942085756366	8.06455180933806	8.40258115230423	7.78084042613947	0.430673524779678	0.0854704162013512	0.387080084432702
Merged-chr8-68927137-2	chr8	68926648	68927648	+	590.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	46593.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	5.6174621018957	5.11200584083485	5.14007702511251	5.56269773026363	5.58712229777465	5.3422905421171	0.362356739291574	0.329848795722581	0.721504110160967
Merged-chr1-154786397-4	chr1	154785900	154786900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60480.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	3.11800679011164	2.78256777954313	2.98319461409416	3.1780512860992	3.18202810747905	3.23319564831706	1.0188237022011	0.137749849648319	0.496142736106717
Merged-chr6-86578771-2	chr6	86578271	86579271	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49403.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	5.14437900147829	4.76406501189836	4.72494961294361	4.98338916997862	4.91441251500365	4.70870953848231	-0.0443525466197099	0.913899111973733	0.980811835491594
Merged-chr7-101548374-3	chr7	101547858	101548858	+	943.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7444.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.02787241773117	7.13039245895161	6.64711641697895	7.78576252619458	8.35430951358031	7.40987867776901	1.40458587841669	1.15360877847741e-05	0.000452140740647897
Merged-chr17-47754371-4	chr17	47753875	47754875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	16444.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.445408342523	7.31461327629326	7.28312926041051	7.66863893763933	7.55607308778719	7.44058880325399	0.306808889144353	0.181975766152306	0.564609853313466
Merged-chr10-117856387-4	chr10	117855871	117856871	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10397.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.93813727762653	5.82354387999789	5.99163922911686	5.88783793046453	6.02854017158103	6.0958322201815	0.157107351593457	0.59553932508834	0.879549293510723
Merged-chr16-90743864-4	chr16	90743353	90744353	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	5529.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	5.65579352991483	5.92649175470605	5.90161991424286	5.72603872091141	5.68561004955091	6.00740873524996	-0.0495944141240526	0.876543116494768	0.97133542879415
Merged-chr10-94381204-4	chr10	94380703	94381703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.15721086636866	6.08308067106073	6.11788381820022	5.82464510859555	5.87714314475565	5.95532337066775	-0.410136914739052	0.15575024249449	0.525704453086221
Merged-chr12-112692904-2	chr12	112692404	112693404	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14064.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	6.02052345526994	6.27985259140285	5.98497719967155	6.02162907206967	6.01486601472566	5.65046756403215	-0.327407172895033	0.297992294168502	0.694758301901232
Merged-chr6-34872041-4	chr6	34871551	34872551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	6014.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	6.03465762951071	5.87185174670668	5.83529257596411	5.70252990943397	5.40245800731493	5.51645896038842	-0.68928693832777	0.031184932594783	0.213920998864105
Merged-chr4-132304208-3	chr4	132303707	132304707	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-851.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	4.56883762899568	4.67038195282148	4.51246409267937	4.88919723904939	4.74491766222921	4.62355426527444	0.401576221462382	0.32812568966566	0.7203113757308
Merged-chr10-128704683-1	chr10	128704183	128705183	+	1000.0	f0_balb.idr	intron (NM_183417, intron 1 of 7)	CpG	368.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	6.63980681137956	6.70974680289715	7.10118854891224	6.77521795851681	6.74190870292021	6.70688670523967	-0.12457066333526	0.646603595761852	0.90100465546023
Merged-chr9-53389729-2	chr9	53389229	53390229	+	834.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	5706.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	5.22828642215943	5.12029202294812	5.36135968488627	5.36205413919501	5.37581672916919	5.45340026786131	0.324172127450475	0.34456564768943	0.733150745942016
Merged-chr11-75462475-4	chr11	75461978	75462978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030711, intron 1 of 2)	intron (NR_030711, intron 1 of 2)	939.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	7.53163547141072	7.52532198444596	7.50827967696671	7.38441270156227	7.56408586951488	7.24705972930552	-0.15875231071885	0.495484968576365	0.832500902975543
Merged-chr2-167950049-1	chr2	167949549	167950549	+	541.0	f1_balb.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17722.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.27928040861096	7.43799393442876	7.37080851637109	6.76523614068318	6.99155517384761	6.83521643166221	-0.740995875758183	0.00233943257977052	0.0348103551676584
Merged-chr7-16387827-4	chr7	16387302	16388302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285892)	promoter-TSS (NM_001285892)	94.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	5.33045419736936	5.30446353831061	5.39261062996161	5.17024561410688	5.13123518951879	5.27341622730381	-0.308689007413988	0.370159163538279	0.754629515611739
Merged-chr7-19381935-4	chr7	19381438	19382438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007949)	promoter-TSS (NM_007949)	-101.0	NM_007949	13871.0	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	4.25649243634177	4.57402703909487	4.49890991295594	4.53222953059986	4.0591272061256	4.39727602456871	-0.287052189470845	0.546273928196073	0.858597153066378
Merged-chr5-97017458-2	chr5	97016958	97017958	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	19769.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	2.61424449192623	2.83118372889341	3.37224142028048	2.81132463941526	2.74350520791645	2.96598535898907	-0.623886021458452	0.430811237213246	0.796606987332891
Merged-chr8-9976428-4	chr8	9975922	9976922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176953)	promoter-TSS (NM_176953)	-99.0	NM_176953	319583.0	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	4.01706744996258	4.25446069728978	4.25494980721344	4.58608530965722	4.36095315184835	4.18167183122017	0.57111881834632	0.227706478157483	0.622842513404052
Merged-chr1-36098581-2	chr1	36098081	36099081	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	30181.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.74769822066909	3.81494330632178	3.75144865234443	3.76237063026845	3.7253124745	3.82113225520551	-0.0205551716988698	0.968649742680156	0.992811398801848
Merged-chr13-106692381-2	chr13	106691881	106692881	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	244577.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	3.00219168759798	2.837740831389	2.83077987003047	2.75870501371414	2.58170007422294	2.90399818135379	-0.75622016046319	0.309830217966126	0.705462734304293
Merged-chr11-50916209-4	chr11	50915696	50916696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178447)	promoter-TSS (NM_178447)	-20.0	NM_001294323	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	5.27009148658846	5.572723366059	5.10887954756729	5.05386006815285	4.56087471501193	4.95772306172719	-0.996887460620542	0.0143892705197472	0.129075293381535
Merged-chr7-12910369-4	chr7	12909878	12910878	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11933.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	6.4716188056563	6.56204235843032	7.0316648161376	6.64210853760993	6.34269203700906	7.0533584062397	-0.00150349363201435	0.996331466286899	0.998984764442627
Merged-chr18-39518606-2	chr18	39518106	39519106	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31361.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.22674211839611	3.23090339632098	3.28663909662631	3.38801663165173	3.34590461214477	3.35806433583507	0.473130295156406	0.432196389950697	0.797270167804312
Merged-chr2-152686250-1	chr2	152685750	152686750	+	649.0	f1_c57bl6.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-898.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	4.40859784930314	4.32126244020377	4.08419113816794	4.60793354364148	4.42661067736352	4.48476905846753	0.562388607212023	0.216096302449433	0.609549967011312
Merged-chr12-4234148-4	chr12	4233607	4234607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204912)	promoter-TSS (NM_001204912)	80.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	8.58359555057138	8.89963656961705	8.53811983417497	8.60728922876133	8.73046354231961	8.37858092069046	-0.143099625737002	0.53403389771832	0.852827033691807
Merged-chr1-156455282-3	chr1	156454796	156455796	+	931.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 3 of 15)	ORR1B1|LTR|ERVL-MaLR	19032.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.28945223773087	5.44435578700016	5.79869806686989	4.70106592655138	4.79989128066441	5.20693748112708	-1.25300540815401	0.00174859333187849	0.0278623044731799
Merged-chr6-122340594-4	chr6	122340079	122341079	+	947.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-352.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	5.31097559858689	5.14803615900734	5.19037205547009	5.12262389942515	5.05216875216409	5.22178294009654	-0.191096730132644	0.591093999732152	0.877373190140703
Merged-chr13-67813987-7	chr13	67813482	67814482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198322, intron 1 of 3)	CpG	166.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	6.41152949503483	6.82450779838284	6.87646769709575	7.1541672011356	7.52786578100051	7.03247598402663	0.835575863340521	0.0037283394486733	0.0493757231967544
Merged-chr1-131138292-4	chr1	131137725	131138725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	9.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	5.60530974529574	5.69726629540564	5.60319442591868	5.56379041172544	5.70961271215632	5.52268582999423	-0.0544675654734563	0.864355610620788	0.968278303984855
Merged-chr1-65060286-4	chr1	65059794	65060794	+	916.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3146.0	NM_007776	12967.0	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	3.98459832866284	4.41366182902462	4.08539990887283	3.94725023561647	3.95033602669099	4.20019055358717	-0.42839898482082	0.398377358640497	0.775124126219069
Merged-chr9-37420833-4	chr9	37420332	37421332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164767, intron 17 of 27)	CpG	12343.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	4.54402124087611	4.75143011223818	4.56284725294051	4.22578094288678	4.03602807534345	4.42198045054674	-1.04485047320955	0.0219800968709465	0.171916082694557
Merged-chr14-72563663-2	chr14	72563163	72564163	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	146340.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	2.95601655142063	3.17716723954913	2.95220810868784	3.13242381059608	3.00459335704656	3.52478514299906	0.83693345901072	0.232120871620676	0.628414299196787
Merged-chr14-70057135-4	chr14	70056625	70057625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-20320.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	8.10398257527367	7.96635909426548	7.52295228116882	8.1879814939588	8.28560663430248	7.88972166670274	0.341079145114851	0.191190115862417	0.577822466760773
Merged-chr4-56141827-3	chr4	56141288	56142288	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	599637.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	2.54861638973407	2.72504455510725	2.74074240589377	2.51487798138199	2.55966046082563	2.75337351792782	-0.355892348783547	0.64327842840993	1
Merged-chr4-150587299-2	chr4	150586799	150587799	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	ID_B1|SINE|B4	64875.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.30641338005955	6.37404115152738	6.21674582336609	6.91761611666274	7.15336668255954	6.48338950994906	0.935063649555711	0.00162927644401135	0.0263955243701489
Merged-chr7-141541302-2	chr7	141540802	141541802	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	5.45089743602029	5.50335626927753	5.82879906672588	5.42420520708532	5.17339435198171	5.77378134274367	-0.246310017255724	0.504571190102177	0.837779945574363
Merged-chr13-52585195-4	chr13	52584640	52585640	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	1703.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.30075995625139	7.62257502573262	7.36498064175069	7.21726034371395	7.31626208054205	7.19021566263535	-0.289095251954149	0.231144998143187	0.62693690919749
Merged-chr2-131479123-4	chr2	131478604	131479604	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-12758.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.43579939374823	4.13325760654495	4.05923989910365	4.60761885191055	4.38882635007488	4.02385843099828	0.37605663538957	0.457363877641559	0.81224966449958
Merged-chr12-85349966-3	chr12	85349458	85350458	+	895.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-10596.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.22674454892722	6.07084779758062	6.23454947844454	6.14778597824993	6.34999316385053	6.56455001590325	0.303963558939879	0.294839332564764	0.691747281751485
Merged-chr12-85462887-3	chr12	85462348	85463348	+	812.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11042.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.69172009924932	3.59799430229293	3.75740198854692	3.38796223977918	3.47201502059076	3.57145357074566	-0.732446988881106	0.195820689059657	0.583465154167297
Merged-chr10-79539116-4	chr10	79538637	79539637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5350.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	4.4589283278944	4.35079356098842	4.10768147249492	4.33842486165878	4.35612143324252	4.45501813926751	0.149434596966093	0.743684588138398	0.93574031770482
Merged-chr6-17787899-2	chr6	17787399	17788399	+	822.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	L2b|LINE|L2	38729.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.54049871457411	3.54203848337758	3.49657178853894	3.3650235058045	3.08656972477748	3.56704916965735	-0.696739199925011	0.266040390668237	0.663824402864358
Merged-chr11-53782165-2	chr11	53781665	53782665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11692.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.0152525400579	4.00146111927619	4.52945918209342	4.50746486054205	4.75051511969879	4.7816480336574	1.26831419639647	0.00801304741606576	0.0861893753319264
Merged-chr15-97449170-4	chr15	97448667	97449667	+	880.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201880.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.94999185462601	3.75017010445455	3.51529727385854	3.58279611450597	3.66181123184421	3.58796935884261	-0.488620538325971	0.390053137065622	0.769435087573939
Merged-chr12-99967278-4	chr12	99966764	99967764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	2765.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.11186635258317	7.06833884889519	7.18494637634295	7.19187522417217	7.06442467285136	7.01376441938886	-0.0384426174621418	0.871352494897031	0.970222087171093
Merged-chr2-84595652-2	chr2	84595152	84596152	+	727.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53828.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.77237808797774	3.46554789052275	3.54345530370155	3.33258608571939	3.60686175715686	3.66677828335991	-0.211943892141401	0.72001520046	0.927998057888854
Merged-chr16-55819025-3	chr16	55818505	55819505	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 3 of 12)	exon (NM_001159394, exon 3 of 12)	3133.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.90987909703193	3.85824364441687	4.0419752343946	3.8890092544787	3.61072733625189	4.10949975391028	-0.18632510948238	0.728914584308436	0.930478966998914
Merged-chr9-118811899-2	chr9	118811399	118812399	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	LTR16C|LTR|ERVL	100207.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.35070015296006	3.33378968916032	3.26392350412	2.85788097111426	3.03863054161477	3.38928489279046	-0.885104929039112	0.202160066474654	0.591866360743962
Merged-chr13-24447507-4	chr13	24447013	24448013	+	925.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	32391.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.03488382987917	4.88402687064039	4.88673827981325	5.09495691565133	5.19400043555415	5.38019048329027	0.593118260636495	0.109026340897756	0.441088334391036
Merged-chr13-60712023-1	chr13	60711523	60712523	+	635.0	f1_balb.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	74341.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.04299095102656	4.20797265260473	4.27988445908455	3.45551227224264	3.26151281056591	3.69450764828909	-2.5015075108239	3.14339265692982e-05	0.0010715092838911
Merged-chr1-91091715-1	chr1	91091215	91092215	+	648.0	f0_balb.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38271.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.51184755359089	3.59464131488567	3.57995378387386	3.63480360936828	3.44814101523642	3.4866319685534	-0.135731616989047	0.810635858240998	0.955079786589595
Merged-chr3-132744877-4	chr3	132744356	132745356	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	60712.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	5.33878654491643	5.30187154030001	5.57678674410803	5.19294548947677	5.23099743281006	5.23155798746996	-0.365303984736051	0.292888464902729	0.690053425164737
Merged-chr4-141646197-4	chr4	141645695	141646695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17920.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.87270003799961	6.55875632322501	6.47974583871946	7.49599414734436	8.00614083105319	7.30562258808752	1.4870654264631	6.35437735514585e-07	3.62892951933409e-05
Merged-chr14-63124421-4	chr14	63123916	63124916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1954.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.28338037178955	8.39615137315338	8.0135176517434	8.25050250632796	8.5693178498475	8.21847024575766	0.160888783044824	0.496840507846958	0.833336003728501
Merged-chr6-89295391-2	chr6	89294891	89295891	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9666.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	6.50525761942245	6.60627646242834	6.09290927692527	6.15573434797372	6.20691920636918	5.54209326321867	-0.686017373206457	0.0491888336493106	0.281880473160595
Merged-chr17-80729964-2	chr17	80729464	80730464	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	3.99367295772588	3.99248092078467	4.17203080586004	4.02010143026748	4.25957447554141	4.4878333003796	0.600046329248921	0.220830428061775	0.615531899308729
Merged-chr17-34628649-2	chr17	34628149	34629149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	-370.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	4.92126715457303	4.71421282616504	5.24831443928542	5.34182571750519	4.82101017486404	5.28144519157321	0.405415543951357	0.332910552009112	0.723927708416112
Merged-chr16-23283187-4	chr16	23282687	23283687	+	723.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-7283.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.64492106695719	4.69556878596387	4.81958681823553	4.33514909126726	4.5307335228407	4.5807471461366	-0.561817105955906	0.182019353050571	0.564649559348511
Merged-chr11-50208895-2	chr11	50208395	50209395	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	B3A|SINE|B2	1925.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	4.35190736513245	4.4965905351862	4.4821927628007	4.18931891104039	4.27047264479751	4.3809033315536	-0.433915404460102	0.329503518724841	0.721399184090983
Merged-chr2-131992529-2	chr2	131992029	131993029	+	844.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175445)	TTS (NM_175445)	37459.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	2.71482909575039	2.67479134245689	2.84032685865377	2.66460429568598	2.87276600813771	2.79237714117227	0.214325390162339	0.769514202804371	0.943125565788486
Merged-chr7-128411100-4	chr7	128410530	128411530	+	960.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	7142.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	6.26960327586832	6.2900763983873	6.23509475407595	6.04729560840665	6.40526721649224	6.35404905629021	0.0238101710205928	0.933682506460314	0.985581479569838
Merged-chr15-76908302-2	chr15	76907802	76908802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	4231.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	2.63386930039331	2.52389235243108	2.82545129962054	2.36838769168798	2.24784248827022	2.60179682872664	-1.59857124895464	0.0660082162337579	1
Merged-chr1-182413011-3	chr1	182412486	182413486	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 1 of 17)	intron (NM_173378, intron 1 of 17)	3819.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	3.71450263602643	3.44930609253239	3.49887422458097	3.66184565663566	3.47187271707686	3.67773339760185	0.140203542078134	0.806914155201509	0.954399610026228
Merged-chr3-99141343-4	chr3	99140769	99141769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027462, intron 1 of 5)	CpG	179.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	7.57858046876122	7.97798158962412	7.43362597548926	7.87302034321139	7.72759264742014	7.54217286501113	0.0456611666705163	0.86125283622871	0.967789299492425
Merged-chr2-36272633-6	chr2	36272120	36273120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.92410971820133	5.86305934081745	6.19499397707986	5.66138785590329	5.62775968986479	5.7168634716871	-0.58476505596658	0.0608044943766956	0.319402122352213
Merged-chr5-114131632-4	chr5	114131129	114132129	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040691, intron 2 of 6)	CpG	473.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	7.28964493744843	7.35657845881776	6.92633926797159	7.22717479932222	7.31075653222593	6.51861726289689	-0.198848541769318	0.525864889561284	0.8492220423215
Merged-chr10-13990947-2	chr10	13990447	13991447	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	MLT1C|LTR|ERVL-MaLR	24568.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.3929806281981	2.81000143474525	2.6848997982133	2.75203058772809	2.47464079648606	2.75885551373204	0.131442518458915	0.872869652724039	1
Merged-chr1-43472173-4	chr1	43471646	43472646	+	888.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	26395.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.41604301758861	3.46223458652918	3.24812849196445	3.72499987069408	3.36430708465541	3.70539699057081	0.814371757766993	0.183585645745855	0.566840862786044
Merged-chr2-11280178-9	chr2	11279657	11280657	+	944.552917	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 14 of 17)	intron (NM_008859, intron 14 of 17)	-59332.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	5.00270126562284	5.03588735173976	4.83642669980618	4.94389189358498	4.95309802485324	4.78377160499141	-0.144542061900565	0.705138478871878	0.92270290989203
Merged-chr1-88278302-6	chr1	88277794	88278794	+	983.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-715.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	5.11189534363842	5.46986728979968	5.20969417899275	5.35703670829717	5.03315782414403	5.42732057406096	-0.00911777552649386	0.980562542056257	0.995512982807197
Merged-chr10-57486302-4	chr10	57485797	57486797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	56.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	6.68591930745422	6.6658305261474	6.78736376433402	6.5858731638988	6.56347649609336	6.239819845752	-0.361937677358328	0.181461679472749	0.563787133106409
Merged-chr13-67724322-4	chr13	67723832	67724832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	4841.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	6.94052608798833	7.30439889345284	7.09903608432809	7.33624867224786	7.58939032199068	6.75568254236211	0.239096563880816	0.432994487865045	0.79758551656855
Merged-chr1-66863937-3	chr1	66863449	66864449	+	818.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-640.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	6.65941769002649	7.02792056328037	6.51320867061888	6.73306388899424	7.02974929559172	6.80880734915965	0.16433374673372	0.564199810127468	0.866217862151886
Merged-chr5-36577260-1	chr5	36576760	36577760	+	617.0	f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5137.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.9170307515486	6.96639628153434	6.8913417678827	6.93831841916865	7.31353304111074	7.03319740359388	0.283607638335379	0.265356846564375	0.663104836467744
Merged-chr13-23717157-2	chr13	23716657	23717657	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50B|LTR|ERVK	-6303.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	7.53707022669198	7.22318535350399	7.16108900386211	7.45285782156717	7.73198673738604	7.61007747389499	0.413358641533637	0.097204865843631	0.415697305705754
Merged-chr18-82847171-4	chr18	82846679	82847679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8718.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.89629251340702	4.73153759273856	5.04562463222378	4.5561896889321	4.92956970814381	4.71311834518108	-0.312790818520779	0.44988153351675	0.808013574003465
Merged-chr8-61558860-4	chr8	61558348	61559348	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32321.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.12018206807938	5.56501348331442	5.31367787761991	5.2443880604146	5.28158341405132	5.18169350938646	-0.220647661129007	0.543443103366103	0.857551302506722
Merged-chr11-78346430-2	chr11	78345930	78346930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	-280.0	NM_001313986	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	5.77311411912513	5.73099520810942	6.20271168338662	5.92549047649706	6.14713772570977	6.30018551405472	0.385398473836971	0.232625748713676	0.628944749946774
Merged-chr6-89430888-3	chr6	89430351	89431351	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	-68238.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.43710426000786	3.39855745018723	3.21298762136065	3.31408032277498	3.25457817708455	3.56033363454118	0.0694055386430868	0.910665583653332	0.979933152968869
Merged-chr15-98505759-2	chr15	98505259	98506259	+	904.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8285.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	4.65454692294976	4.52560385078612	4.42727767541927	4.32198367773257	4.42696820943429	4.45121520481257	-0.363015351331567	0.401356020892198	0.777483628681799
Merged-chr8-33730830-4	chr8	33730310	33731310	+	992.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1104.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	4.47997387469096	4.18762393026411	4.128689955266	4.29553431313134	3.94812895603684	4.33566460111089	-0.229084369953103	0.642804334135611	0.899532469670737
Merged-chr7-97124187-2	chr7	97123687	97124687	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	42436.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.65428819729971	6.77832468910937	6.51523820125046	6.89930407061447	7.19345778133704	6.7640548972067	0.488995572756185	0.0724200550520543	0.353484205073927
Merged-chr1-170919390-2	chr1	170918890	170919890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160215, intron 4 of 4)	ORR1B2|LTR|ERVL-MaLR	-6449.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	3.83135289073659	3.60198352582428	3.47244586099002	3.58147153154249	3.52166222069305	3.70814314965074	-0.17101569607118	0.764644291082652	0.941983059468209
Merged-chr10-60368613-2	chr10	60368113	60369113	+	570.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159572, exon 6 of 7)	exon (NM_001159572, exon 6 of 7)	21762.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	3.56754777543976	3.29610350842699	3.88936075310602	3.45983787411634	3.58760168583822	3.95681783656708	0.267130894278161	0.668052443170732	0.908976375106763
Merged-chr18-36760787-2	chr18	36760287	36761287	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154585, intron 1 of 6)	B4A|SINE|B4	565.0	NR_154585	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	4.44725180963984	4.37574715076309	4.35374321469346	4.25319820664168	4.33234622320855	4.37727165676231	-0.195560254538218	0.65738321525028	0.904798742244684
Merged-chr17-26069511-4	chr17	26068995	26069995	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162868)	promoter-TSS (NM_001162868)	-318.0	NM_001162869	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	5.0566466072849	4.57806238623648	4.80093999286676	4.65614811192983	4.46470460871141	4.54540952517052	-0.643096504013612	0.134607531061904	0.490439383589701
Merged-chr13-23531731-4	chr13	23531226	23532226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153173)	TTS (NM_153173)	682.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	7.2289131861087	7.32362189900946	7.5815344924495	7.2638713279774	7.64079409755466	7.69155065929458	0.241802684138197	0.346818699346172	0.735006911502857
Merged-chr8-126592147-4	chr8	126591658	126592658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164598, intron 1 of 1)	intron (NM_001164598, intron 1 of 1)	1278.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.09412675159015	8.13921235123659	7.83745688634278	7.83836726707507	8.14722137977427	7.97355705772058	-0.0560920466110766	0.807756227815292	0.954563636421224
Merged-chr2-118490841-4	chr2	118490321	118491321	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11125.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	5.21315276992586	5.33169970197153	5.07526317502829	5.83813656899496	5.63815641110467	5.82525331241604	1.03772922167475	0.00223947720267237	0.0336418882614123
Merged-chr2-130525664-4	chr2	130525160	130526160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	38089.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	7.19334498916609	7.32477587561322	6.79104325747109	6.52776388911535	6.57482696977802	6.5262755761072	-0.912148878447969	0.000827066370792623	0.0155311529182831
Merged-chr5-127616293-3	chr5	127615796	127616796	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1096.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	7.31122706613111	7.37691424589688	7.69226284326159	7.49898019762288	7.5463624716951	7.57876295623312	0.114198452052985	0.632232558451731	0.895435008062156
Merged-chr8-104118072-4	chr8	104117572	104118572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	-12199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	5.33111210033437	5.09150084891764	5.39667429215739	5.50593198382002	5.34714346373779	5.62491041067401	0.424723071866964	0.224388577567627	0.619153519154732
Merged-chr9-27000195-4	chr9	26999677	27000677	+	927.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025862)	promoter-TSS (NM_025862)	500.0	NM_001326361	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	5.48729874880323	5.83283502610134	5.88935133046167	5.56354050758835	5.70366339366458	5.70565787581367	-0.152740291855682	0.642088457600715	0.899321579249264
Merged-chr13-5803033-4	chr13	5802541	5803541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55051.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.89021728108422	9.21891787482064	8.49473167652966	8.54353525462002	8.8636279424051	8.15733800217411	-0.475868329056093	0.0993138305676646	0.420138553758414
Merged-chr8-71541641-2	chr8	71541099	71542099	+	797.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1331.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	6.12107827284668	5.98337623143667	5.85687883957667	5.89463918135132	6.16266124991182	5.84174030279512	-0.0211755923463209	0.945201961200782	0.987875414328125
Merged-chr2-27752258-2	chr2	27751758	27752758	+	806.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	41675.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.16060035348367	4.2533106185274	4.63747257253643	4.11650979252415	4.05087655209126	4.63037533478436	-0.201949263976422	0.692784593651402	0.918751421968122
Merged-chr18-23888080-4	chr18	23887587	23888587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-66601.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.11993476483187	5.99780097771699	5.63449251159409	4.73917014069736	4.77916797891634	4.89663814088554	-2.28451042217891	5.13869747175089e-10	5.89711056183505e-08
Merged-chr9-65568103-3	chr9	65567559	65568559	+	843.388916	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	12028.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.9334092373222	7.79308504346392	7.73981226299369	7.67334272097406	7.907635909214	7.62236127915278	-0.115147965200942	0.614540962447737	0.887509542539593
Merged-chr6-128630234-3	chr6	128629744	128630744	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7310.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	3.67260191996408	3.95661635611295	3.75581428707051	3.76648727078971	3.78626784206853	3.72027233662215	-0.144078710121532	0.787687597353797	0.94877064431094
Merged-chr3-96268075-2	chr3	96267575	96268575	+	548.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	-579.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	6.46452906412038	6.63485244545326	6.83269255234827	6.22241126732951	6.76041270171327	6.66777258102227	-0.114273747345407	0.701927225864471	0.921616258659442
Merged-chr7-3707223-4	chr7	3706677	3707677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029767)	TTS (NM_029767)	3136.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	6.17372660873215	5.59660319073497	6.22625990966512	5.50796270752562	5.77595857147732	6.34000366604206	-0.190976401887177	0.62308200303925	0.891251075175817
Merged-chr1-179587727-2	chr1	179587227	179588227	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 2 of 10)	L1MB4|LINE|L1	41198.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	2.77729540168034	2.97689146828205	3.24428177091917	3.30226811243961	2.80021165446883	3.14904551438922	0.394540149646209	0.593481232849343	0.878539957258253
Merged-chr15-101978683-4	chr15	101978193	101979193	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24406.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	7.27262269166254	7.4096523386244	7.50031701882494	7.29454837015245	7.65417739223542	7.4877253168318	0.144182267301483	0.552307386065913	0.861623131780424
Merged-chr7-17027653-5	chr7	17027134	17028134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	CpG	280.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	7.50352696400045	7.65932164789462	7.41063691133745	7.84112373028824	8.03077138401074	7.3174125800049	0.350877072915728	0.19871428217229	0.587160238692855
Merged-chr5-123345373-2	chr5	123344873	123345873	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029850, intron 1 of 5)	CpG	925.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	3.20548372470457	3.14163162971701	2.69929274303882	3.10139821654153	2.70645314209223	3.03902874375814	-0.330937854943575	0.678218906159159	0.913379457468915
Merged-chr9-114742896-4	chr9	114742339	114743339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	11636.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	6.08879732617574	6.09863000561795	6.37181948876859	6.39401762336135	6.53113824502327	6.41295664905322	0.444669710616955	0.111623328758009	0.446313714155454
Merged-chr7-3693665-4	chr7	3693184	3694184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	74.0	NM_001164205	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	7.74431513783676	7.95633371569669	7.92366844218256	8.03881974747668	8.23460243245794	7.95666860503693	0.300168329876745	0.179733035387549	0.561276907469273
Merged-chr12-85629777-2	chr12	85629277	85630277	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	29759.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	2.06076912388587	1.99396777631634	2.23127087048365	2.01404919132787	1.8946929000821	2.11182025400366	-0.70136035906878	0.455534993361817	1
Merged-chr2-109913376-4	chr2	109912848	109913848	+	734.488098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033473)	promoter-TSS (NR_033473)	-29.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	4.02028254397328	4.39774545254554	4.1536671300867	3.93578187683609	4.26845159816307	4.39690553379413	0.0212662532223135	0.966253818960129	0.992284576568462
Merged-chr4-11454527-3	chr4	11454022	11455022	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31436.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	5.66158776881441	6.03363189157542	5.62563044003031	6.32011205838356	6.58436478011102	5.88676845875115	0.87470228901681	0.0115860995016764	0.111541845115757
Merged-chr18-80739084-4	chr18	80738579	80739579	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 27 of 28)	intron (NM_015805, intron 27 of 28)	-26008.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.45395379739112	5.44497718351283	4.87974923936169	4.64661901060049	4.35043732856455	4.46561344729394	-1.81431398931058	2.33172298652456e-05	0.000831981158931113
Merged-chr12-36036250-2	chr12	36035750	36036750	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	L2|LINE|L2	6228.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	7.2647695025759	7.31910155130916	6.9252743737498	6.1536184885487	6.07271546815786	5.79329611775013	-1.85116253382186	1.86352770954807e-10	2.33806117273456e-08
Merged-chr11-70468816-4	chr11	70468327	70469327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8843.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	7.58999228169172	7.63577569480929	7.72832095658623	7.62643224728768	7.90026488432946	7.50179256471387	0.0667442945919963	0.778212942739604	0.945438331205668
Merged-chr4-102572836-1	chr4	102572336	102573336	+	1000.0	f1_balb.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2776.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.05412661140459	6.76939763454877	6.65734329192453	7.19989750247133	7.27249030747202	7.18989063325686	0.571698862712771	0.0254409217810113	0.189092292948136
Merged-chr4-95784358-4	chr4	95783867	95784867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	L2|LINE|L2	182668.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.39503516112942	4.22775792710136	4.24465366555432	4.45940936689962	4.46202380414739	4.6115697684751	0.551328869687308	0.21110646067635	0.603477171445767
Merged-chr4-145300340-4	chr4	145299856	145300856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 2 of 12)	intron (NM_009401, intron 2 of 12)	14791.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	3.2760031427965	3.13303644011308	3.41956502313225	3.48343195974776	3.25553609649054	3.4364297302221	0.460756639823565	0.455989498552276	0.811256559277932
Merged-chr8-22167218-2	chr8	22166706	22167706	+	669.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-771.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	3.43939651961834	3.25400952356506	3.22699342287249	3.17255578670924	3.11219113201795	3.18144739296968	-0.670007189171931	0.288666939919521	0.686124851873233
Merged-chr11-114668515-4	chr11	114667999	114668999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-44.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	7.42096991610661	7.18699009646302	6.98212552390789	7.28405461056316	7.22453035555028	7.43643076243236	0.142610900236701	0.573551932894847	0.870211868444768
Merged-chr19-42080779-2	chr19	42080279	42081279	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198108, intron 1 of 4)	intron (NM_198108, intron 1 of 4)	5591.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	3.78652443585946	3.73776497324438	3.71364152618982	3.69053322261572	3.76676589583833	3.62227018954253	-0.160431633837834	0.764497893371938	0.941979298344481
Merged-chr14-70545290-4	chr14	70544794	70545794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180588)	promoter-TSS (NM_180588)	43.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	6.14056404065672	6.52920670023653	5.92164152295598	5.78808864606858	5.7770883072307	5.59978119183838	-0.874966982624345	0.00795107099830043	0.0857090697642588
Merged-chr17-10393626-2	chr17	10393126	10394126	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-62590.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	6.13970845064752	5.95346503393614	5.95039223738972	5.41547878073131	5.32566568821947	5.32379411317892	-1.22579513281445	0.000114226414963993	0.00317135520064194
Merged-chr17-70746520-1	chr17	70746020	70747020	+	568.0	f1_balb.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	100257.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.49127634477924	3.17474280715938	3.36623644712672	3.19969348255506	3.16165959465598	3.21018354627294	-0.660688341072616	0.295495003268067	0.692413375009256
Merged-chr9-7846942-4	chr9	7846446	7847446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9889.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	4.88137378048525	4.71658807142394	4.99420590825541	5.34534671122248	4.9458040667441	5.15913279667829	0.641682232440525	0.100128524898563	0.421993726860012
Merged-chr17-45552995-2	chr17	45552495	45553495	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-2705.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	2.08133216987687	2.1918651121289	1.99000675763959	2.21460555161782	2.05640109187581	2.46409609482689	1.12712988049209	0.237746946688947	1
Merged-chr7-104369226-3	chr7	104368739	104369739	+	869.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-10593.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.00801210968746	5.98615049705248	6.28613825014009	6.06211117250223	6.45302411687606	6.1648530149839	0.263069678414597	0.38743965780342	0.767664699285794
Merged-chr3-95706432-4	chr3	95705926	95706926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-18509.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.88581727770302	4.07905010168436	4.04137509606176	3.74112389244365	3.70587747205492	3.96904273903709	-0.632129656240905	0.222592433740138	0.617547053435896
Merged-chr14-64747360-3	chr14	64746853	64747853	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 17 of 39)	CT-rich|Low_complexity|Low_complexity	94822.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	2.57610266573312	2.5407306865718	2.77111173990273	2.85773576267077	2.58667061847607	2.72174706900611	0.52809512784496	0.488525318698999	0.829271180348164
Merged-chr3-127796488-4	chr3	127795994	127796994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	5837.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	5.55192187556954	5.66163162121667	5.65988992682422	5.3373271132242	5.2703295628755	5.35173953929755	-0.591794800166847	0.0709948140288697	0.349525855612934
Merged-chr11-69696007-4	chr11	69695518	69696518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	80.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	7.0555500610916	7.23606274168823	7.11195380769696	7.03625940828767	6.50421971304033	6.66423138263422	-0.589188748900823	0.0326570056003016	0.219990618684415
Merged-chr4-117156072-4	chr4	117155592	117156592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	40.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	7.4079711709941	7.62137280230195	7.35298010384879	7.24529496943281	7.22376337680585	7.13648336943391	-0.393791234897641	0.0950650092287491	0.411110092401941
Merged-chr17-85574221-3	chr17	85573721	85574721	+	977.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44175.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.78093652583528	2.87693356047289	2.87514982554249	2.69938370578906	2.81455373850755	2.76458423667682	-0.42260890084675	0.555897440932534	0.863466091383778
Merged-chr13-46043165-3	chr13	46042698	46043698	+	957.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-78207.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.30683484235329	4.564591041599	4.12398679961988	3.78077064731565	3.85606807835684	4.28439101013442	-1.04156177635621	0.0468420997241502	0.273979856168079
Merged-chr6-122945035-3	chr6	122944536	122945536	+	875.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-7479.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	4.01969841390193	4.34954941156328	4.15369223792035	4.24451663430559	3.96877978845889	4.43801361473903	0.100587914445947	0.840282716735232	0.962819298477451
Merged-chr2-167717891-3	chr2	167717409	167718409	+	841.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26732.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.57145256138408	6.44424099843688	5.86704865238131	6.1252174606516	6.04559289154378	5.60886569935435	-0.647957364928694	0.0650694226975846	0.332696111823806
Merged-chr10-80752329-4	chr10	80751865	80752865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2838.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	7.88547081354747	7.56469896877473	7.44193355632999	8.00496450127279	8.24170036001771	7.76534787810482	0.536289644787776	0.0377951226445055	0.240395701345667
Merged-chr2-167761823-4	chr2	167761328	167762328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	70651.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.63909610406799	8.6245352230489	8.27104311846534	8.42232752494887	8.67343584691604	8.2207098801226	-0.0952889867421668	0.691835890154096	0.9184939224729
Merged-chr12-117747576-3	chr12	117747100	117748100	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 25 of 27)	(TTC)n|Simple_repeat|Simple_repeat	-96261.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	3.10255496767965	3.1715346897279	3.49457713656527	3.71593447489848	3.52540856106496	3.9970914368613	1.8606870540925	0.00364240530408902	0.0485770073321452
Merged-chr8-80263084-4	chr8	80262585	80263585	+	928.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205077.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	3.76863994844511	3.48121694998859	3.89734007635483	3.89687014732593	3.43947227652025	4.10017736781164	0.358068365306847	0.552082423667405	0.861546661145201
Merged-chr11-103218494-3	chr11	103217967	103218967	+	705.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177801)	promoter-TSS (NM_177801)	-35.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	3.33639111122074	3.28022481088082	3.39757358350527	3.4408513349249	3.33136170719403	3.46832964041524	0.292151839165581	0.622097414220775	0.890937721901588
Merged-chr4-95850411-6	chr4	95849886	95850886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	116649.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	5.16650220953201	5.32119815596265	5.59276454589068	5.4851202009475	5.67097748770011	5.70603276831683	0.50411242639476	0.143103917064985	0.50499981895514
Merged-chr1-24698085-3	chr1	24697613	24698613	+	933.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	L1M4|LINE|L1	19195.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	6.18508571984968	6.34289482195021	6.40681788613808	5.88640809966191	5.82984263695336	5.77530310307428	-0.819441767466908	0.0048690012032796	0.0601365373493378
Merged-chr14-25854261-4	chr14	25853754	25854754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	12099.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	6.71211679141317	6.75378461506156	6.35628243598082	6.43276729754158	6.61862202702105	6.15698064991972	-0.318746566230884	0.283082596288164	0.681087703395862
Merged-chr4-152154753-1	chr4	152154253	152155253	+	543.0	f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-2546.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	3.86371696596615	4.1416041387654	4.08554248115778	3.93902237609954	3.90900462103068	4.24151453257277	-0.0171272393737571	0.973099354402638	0.993943197210219
Merged-chr7-24593881-4	chr7	24593382	24594382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023154, exon 2 of 8)	5' UTR (NM_023154, exon 2 of 8)	-6241.0	NM_001033205	101544.0	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	4.93449346237825	4.73879672528269	4.97191545381165	4.91814775847739	4.50700151121938	4.70277410937072	-0.377885725925739	0.360550886052189	0.74673233090976
Merged-chr15-81860100-4	chr15	81859575	81860575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.6354480816791	7.57632040856102	7.58568311859755	7.80182061577893	8.14905488860701	7.76180805408117	0.466608115676539	0.0471076617057166	0.274805191748783
Merged-chr14-63131333-2	chr14	63130833	63131833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8871.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.13425109711929	8.34271770326406	7.911480909201	8.02967210049791	8.32518009172928	8.07434272501687	0.00887975991049802	0.970214309408169	0.993401776171655
Merged-chr16-23313831-2	chr16	23313331	23314331	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	MIRc|SINE|MIR	23361.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.78128551500381	5.68229165118628	6.08003366328215	5.7536634964762	6.09702852645107	6.11946741166966	0.268681596384995	0.404764543507539	0.779791650050306
Merged-chr16-93817087-3	chr16	93816591	93817591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-15030.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	7.32573036893963	7.0472543488701	7.07784825720013	6.97355393166321	7.20289176498567	7.0435049625824	-0.117493654851193	0.638860016515777	0.897837489726634
Merged-chr1-46927265-4	chr1	46926766	46927766	+	966.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1490.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	5.13044367611357	5.57293599853798	5.23578641253018	4.93048898262827	4.53989992621655	5.10452871746247	-0.982534149364096	0.0172773192620621	0.146484563932055
Merged-chr18-83832320-4	chr18	83831825	83832825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	254237.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.1076886141948	4.88000689492401	4.32437263580611	4.74946844306303	4.6274101673719	4.8358950881923	-0.196625071830261	0.668651453485326	0.909311772980862
Merged-chr6-32512100-4	chr6	32511607	32512607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	966.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	6.78854453895499	6.77296037964717	6.59782538271195	6.70243821623644	7.07385651938804	6.49284745170497	0.10471152504748	0.715589034888569	0.926402055104375
Merged-chr7-29156698-2	chr7	29156198	29157198	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	-488.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	3.39381704666003	3.30691851274391	3.76180745637457	3.54058180712272	3.21335086087715	3.5342054323967	-0.226654136153445	0.717484321643068	0.927094417428739
Merged-chr10-80051963-9	chr10	80051460	80052460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-1528.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	7.70202159047733	7.5556013417896	7.50466661248388	7.76347940792739	7.86586700467819	7.3655956422576	0.144233274284874	0.562559406163599	0.865745518569294
Merged-chr2-90575245-4	chr2	90574724	90575724	+	941.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRc|SINE|MIR	5423.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	8.49477414500451	8.50898538322703	8.26897270258954	8.329588056351	8.68256471508824	8.39779782298325	0.0714698913591197	0.750420818994212	0.937550343416037
Merged-chr13-20184865-4	chr13	20184400	20185400	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94393.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.43138856332316	6.59588356392099	6.70761615498338	6.37312812000981	6.60755225720611	6.70487794643994	-0.0180080904477076	0.947592078629504	0.988008807662239
Merged-chr2-27326020-2	chr2	27325520	27326520	+	699.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-78717.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	4.22115226559207	4.36842817604829	4.25524725366117	3.7336155220932	4.0176549717085	4.27908345515228	-0.740634126759724	0.145249133267995	0.508323093916695
Merged-chr14-73057027-4	chr14	73056515	73057515	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7901.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	4.56654153469739	4.45688644042087	4.33683569251503	4.47142006033583	4.5131574192559	4.44984567821276	0.0441876747792466	0.918370007998873	0.981763285723178
Merged-chr13-95951245-4	chr13	95950750	95951750	+	963.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59328.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.88208346442839	4.04198472641639	4.05773603938403	3.99281855905304	4.15310670793526	4.21672032124412	0.374931682272103	0.442310491608587	0.803209439640776
Merged-chr15-36933807-4	chr15	36933264	36934264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73638.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	4.81471780503508	4.80100157360707	5.07272151639354	5.02715071480213	4.94665572156462	4.81628379283113	0.100186995871597	0.796014474080639	0.951396269938008
Merged-chr15-67118560-4	chr15	67118063	67119063	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	58319.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.3872798529428	6.0921294871483	6.33634146529206	5.79848992113463	5.44831954411395	5.84432351236133	-1.01288219995293	0.001415326255685	0.0236764107525206
Merged-chr5-99309171-3	chr5	99308700	99309700	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-56273.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.41480700357375	3.36837261835726	3.35979459301275	3.26417195384637	2.78848833401226	2.9482211748735	-1.61337392340777	0.0258712992653132	0.190677520189249
Merged-chr10-127265960-2	chr10	127265460	127266460	+	837.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	-302.0	NM_027151	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	5.80401302217745	6.22074269430944	5.6133031052993	5.84612757770963	6.00373800725075	5.70567429841054	-0.0926860187860238	0.786262505786154	0.948411623053178
Merged-chr7-90444176-1	chr7	90443676	90444676	+	542.0	f1_c57bl6.idr	non-coding (NR_073436, exon 1 of 2)	non-coding (NR_073436, exon 1 of 2)	1395.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	6.07713388672833	5.95978207191941	6.13648683073992	6.122439680066	6.18828756788352	6.33453287827763	0.269654433923875	0.345196385761679	0.733666487940844
Merged-chr17-23791095-1	chr17	23790595	23791595	+	546.0	f1_balb.idr	Intergenic	MER70B|LTR|ERVL	-4879.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	3.44014825975805	3.80060210503337	3.80857679641318	4.18336723436609	4.27283827551797	4.03217378336526	1.4843009883882	0.00627570225342786	0.0721255018098377
Merged-chr17-71310953-4	chr17	71310453	71311453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145158)	promoter-TSS (NM_145158)	58.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.63468939904048	7.84206247155636	7.80365400561141	7.00192067430504	6.75996108848724	7.08929927721449	-1.20798736304887	6.39194091496987e-07	3.64288095652611e-05
Merged-chr5-92000987-4	chr5	92000494	92001494	+	947.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13521.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	3.23923959156586	2.8523433891866	3.20142191323644	3.04795615542953	3.15308108829683	3.27265218680229	0.220456378839826	0.746654479312806	0.936300236930265
Merged-chr9-108854093-4	chr9	108853614	108854614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	71.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	8.15368859824889	8.2176562549489	8.11251429682308	8.13677213785592	8.54652249518992	7.83717949165048	0.0775667274543684	0.765279660902966	0.942137701159565
Merged-chr15-37006565-4	chr15	37006074	37007074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026521, intron 1 of 3)	intron (NM_026521, intron 1 of 3)	828.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	7.73508237046129	8.07924642957602	7.75531732571443	8.0557306827565	8.12942110836273	8.01290963926068	0.280499201067016	0.219957408775295	0.614292007430178
Merged-chr7-143048132-4	chr7	143047618	143048618	+	950.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4632.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	3.68111833315064	3.72784490767596	3.82541209791484	3.65691261291906	3.55763345264087	3.58601420131705	-0.491407223722481	0.366512254917593	0.751577290267468
Merged-chr11-53324659-4	chr11	53324156	53325156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026479)	promoter-TSS (NM_026479)	-33.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	5.37638009111807	5.48842228003842	5.74360640406438	5.61663862526524	5.63673858053276	5.38870464295391	0.0486793460558624	0.885739981316851	0.973636976161493
Merged-chr16-90396387-4	chr16	90395875	90396875	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	9978.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	5.10011250711964	4.68505728399845	5.04678161438013	4.61304641071697	4.2975297372116	4.80021623612022	-0.879390720753298	0.0459854342619622	0.271045973937051
Merged-chr3-89860546-2	chr3	89860046	89861046	+	604.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29176.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	3.41471907322752	3.45371011016394	3.3054785373703	3.38593327109294	3.18048854555752	3.69438143662865	0.12596514217614	0.841084608362578	0.962832831784718
Merged-chr1-165667615-4	chr1	165667113	165668113	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33072.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.3396343674716	7.43054955376875	7.23726349331425	7.28520420373324	7.6227617240116	7.40791188219456	0.161468665894985	0.503631424806029	0.837135452071757
Merged-chr12-91534701-4	chr12	91534213	91535213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011648, intron 9 of 9)	intron (NM_011648, intron 9 of 9)	54936.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.46613034951846	4.20679914637345	4.19871693851473	4.25594962541118	3.92154897853442	4.52204017196876	-0.146301937993324	0.771237813580948	0.943589735529798
Merged-chr4-146168002-2	chr4	146167502	146168502	+	756.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	IAPLTR4|LTR|ERVK	10312.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	3.56682808700764	3.64407390953452	3.50238885246211	3.62841110308781	3.57978394833573	3.57367750094862	0.0637943914958174	0.908758023522869	0.979318923423343
Merged-chr7-34193032-4	chr7	34192538	34193538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360710, exon 4 of 6)	exon (NM_001360710, exon 4 of 6)	3632.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	7.22102255382486	7.28027118126546	6.96777667584449	7.33792727328656	7.20860191083143	7.28156805729274	0.154557479562677	0.523444593689766	0.84820746264669
Merged-chr1-134455537-4	chr1	134455002	134456002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153128)	promoter-TSS (NM_153128)	-29.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	5.69300769059701	5.73732207424998	5.07666383120153	5.84202183968338	5.70860282905998	5.29507510816825	0.175057403571267	0.655075375856468	0.904118761184066
Merged-chr1-172335343-3	chr1	172334831	172335831	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	7.93560141440792	7.77814722827775	7.62308445088017	7.06692575349718	7.15752145820025	6.78465969510802	-1.12747976817241	7.53649977474155e-06	0.000314317561435569
Merged-chr3-95671441-2	chr3	95670941	95671941	+	682.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12720.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.01666551033781	5.02295615122997	5.28371336625506	5.25021128070748	5.15522881807316	5.31652407880142	0.275715587449853	0.444353458558187	0.804158035358769
Merged-chr14-121409175-3	chr14	121408672	121409672	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29942.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.74036358883875	3.55108881261793	3.7397617250397	3.70333161124574	3.84712148001942	3.5395651703785	0.116670321261336	0.834332904804815	0.961273502395445
Merged-chr19-4298977-2	chr19	4298477	4299477	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	7245.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.07842134966222	6.45459741908363	6.40769866279058	6.08158474401548	6.33404300810363	6.53606823837444	0.00485794402795148	0.987236001830106	0.997207114211414
Merged-chr1-151661772-4	chr1	151661269	151662269	+	907.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	90396.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.95789271374869	4.54844681877709	4.65391605391916	4.54032141307887	4.5607289355026	4.51083822432993	-0.470062248773856	0.271574371078863	0.668970670201308
Merged-chr16-16525646-4	chr16	16525148	16526148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1763.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	7.01440023786346	6.87677498904202	6.75006209873288	6.92542666991047	6.82864544023749	6.8545727475797	-0.0336584921787423	0.892920253920406	0.975146620821922
Merged-chr8-105856106-3	chr8	105855752	105856752	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	1149.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	4.97700596261513	4.93736541917459	5.39131374020681	4.99338307712809	4.88137336574469	5.19140452307755	-0.182921463327733	0.6420647535416	0.899318654894951
Merged-chr10-80672452-3	chr10	80671986	80672986	+	848.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	3807.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	2.95255287762309	2.80614949257733	2.90254725501186	3.14713932768451	2.72560275436136	3.36972128840368	0.976556523745301	0.190024749787181	0.576208563267027
Merged-chr14-8115974-4	chr14	8115463	8116463	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	17752.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.1099667431119	4.05104013484882	3.96937607716587	4.00247763300748	4.02864562501736	4.26960571029715	0.143534471126303	0.768681661809354	0.942908054936408
Merged-chr7-24972137-4	chr7	24971669	24972669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010261, exon 2 of 5)	exon (NM_010261, exon 2 of 5)	559.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	7.6146997910065	8.03853652490588	7.8639407161633	7.65674721095993	7.8256061480472	8.01031977422774	-0.0229440484721156	0.925534719096532	0.983222594114141
Merged-chr2-121179058-4	chr2	121178569	121179569	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110985, intron 6 of 18)	L1_Mur3|LINE|L1	7901.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	4.71660522896451	4.83219446045616	4.41813986971048	4.37340686272061	4.73137858891977	4.92340924038496	0.0360245263290373	0.93629196893328	0.986037792257163
Merged-chr12-110498746-4	chr12	110498243	110499243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13004.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	5.78275072145957	5.52058113926066	5.87442090388725	5.60481171458147	5.6988742886745	5.51713613781671	-0.204173299399547	0.532686177435852	0.851971173271146
Merged-chr10-81167881-4	chr10	81167388	81168388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-168.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	6.51577462365178	6.49541575843169	6.32742783288036	6.61570071615152	6.57381578857873	6.65725330510038	0.25257571905687	0.335114654757834	0.725339338581532
Merged-chr1-171102675-10	chr1	171102170	171103170	+	976.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18991.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	5.72506287097402	5.67496826797148	5.42339581175354	4.76308950574803	5.28183207736089	5.39683253415567	-0.869630108758914	0.023917271603288	0.181773430932907
Merged-chr1-184049239-4	chr1	184048729	184049729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14848.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	5.8964419982258	5.88954790719321	5.78283320286096	6.24788321026714	6.30277512107457	5.79132573898026	0.494590148720348	0.116161206636804	0.455084593523009
Merged-chr11-29148725-3	chr11	29148214	29149214	+	579.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	17963.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	5.29199414106156	5.37043831033238	5.28239991720071	6.041122434322	6.29996359114052	5.71806638746926	1.34870363789263	6.85446990362307e-05	0.00205234520237736
Merged-chr4-136896722-7	chr4	136896223	136897223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007572, exon 3 of 3)	exon (NM_007572, exon 3 of 3)	2121.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	6.39182017918371	6.7493232342615	6.63999978926878	6.70770909624732	6.58615253293629	6.49172524467632	-0.00179159112279676	0.994773768725026	0.998961028701257
Merged-chr2-181365415-4	chr2	181364923	181365923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	0.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	7.59836211527618	7.75290900198674	7.52711678105883	7.62467098212672	7.70500662394493	7.41583127344121	-0.0568883522801147	0.806959598375912	0.954399610026228
Merged-chr3-9828749-4	chr3	9828254	9829254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	4925.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.82857367931327	6.57962655735977	6.95111452474312	7.06804321605038	7.26531553441607	7.19834852685791	0.601753611292347	0.0188429335950402	0.155343709884524
Merged-chr7-97751546-4	chr7	97751101	97752101	+	687.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-13354.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	4.12276097203379	4.04538083607475	4.08408761551128	4.16179301168757	4.2782164807599	4.2897485070209	0.4502710188752	0.334014656463078	0.724748007849347
Merged-chr3-108895814-4	chr3	108895322	108896322	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5814.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	3.16267759487549	3.25195826884888	2.99977245263369	3.35673802845011	3.27307401422403	3.534117545924	0.969715647447263	0.135718469212603	0.492469297371423
Merged-chr12-99526946-4	chr12	99526438	99527438	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36903.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.32267337715595	3.14241060864646	3.53958504609758	3.59812341034985	3.66741853957752	3.6617258812127	1.14919661364858	0.0563290188323143	0.305961550949749
Merged-chr11-20420065-3	chr11	20419571	20420571	+	656.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB5_1-I_MM-int|LTR|ERVK	-87358.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	3.39246969872625	3.34449510097718	3.58717475359926	4.68189896748121	4.73052854770668	4.06867672730153	3.72694457803301	4.14322232331313e-09	4.10904938114706e-07
Merged-chr7-143069233-4	chr7	143068745	143069745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115085)	promoter-TSS (NM_001115085)	-123.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	6.49420480256618	6.58934374072497	6.96464237342905	6.47095465552431	6.55437664985145	6.74700746739539	-0.155354524197786	0.584527942482572	0.874568023559098
Merged-chr8-108723363-4	chr8	108722874	108723874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8730.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.1810597138569	6.07240147104455	5.90866007064424	5.73720269819061	5.702931812393	5.68438133658688	-0.632132366851838	0.0364558058159062	0.234929886177968
Merged-chr7-75655406-4	chr7	75654889	75655889	+	834.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-192949.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	7.19914351853509	7.55310019485187	7.25452508842151	7.13916145762076	7.24608286749748	7.03368920599997	-0.300767237963053	0.230450379439654	0.626275889098398
Merged-chr11-69553436-2	chr11	69552936	69553936	+	759.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007911)	TTS (NM_007911)	-4328.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	2.15840594332599	2.29282464686069	2.49166791097615	2.15258646712955	1.99213662689101	2.184809316838	-1.55374696953084	0.0984224082875887	1
Merged-chr16-20829173-3	chr16	20828673	20829673	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94662.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	4.03649685420607	4.11888594089104	4.34384696496605	4.62392880764022	4.6777511962976	4.65814922256163	1.27874882289802	0.00403581232541573	0.0522583056291927
Merged-chr12-69373914-3	chr12	69373407	69374407	+	758.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	1757.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	5.27262994185294	5.48522502304161	4.99120753102504	5.14393870215891	5.39556594038322	5.26931239113604	-0.000726466144165495	0.998445642263687	0.999665481732462
Merged-chr2-117146220-4	chr2	117145719	117146719	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25148.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.70662564224725	6.59955983856291	6.67495747140605	6.5894606805681	6.82352787193699	6.70169515118192	0.0832938014558998	0.746368378054448	0.936300236930265
Merged-chr18-84950793-3	chr18	84950318	84951318	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025969, intron 1 of 5)	intron (NM_025969, intron 1 of 5)	706.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	5.93259744191385	5.89185142704799	5.92839954221686	6.11176592403384	6.12320013200852	5.55126423551658	0.0931750005796991	0.775939888364229	0.944804182096302
Merged-chr1-36272690-4	chr1	36272186	36273186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	739.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	8.03747436310495	8.19050473300202	8.14514007223186	8.40425190766596	8.40053376726165	7.94277167586551	0.208376169177226	0.376198284998527	0.759088227619915
Merged-chr17-83548732-2	chr17	83548232	83549232	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34399.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	2.24334393239204	2.1787210477468	2.3754957293901	2.51579786400706	2.33498844094511	2.51425358907986	1.27113743649867	0.135671837140075	1
Merged-chr11-29886779-2	chr11	29886282	29887282	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	L1_Mus2|LINE|L1	-61114.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.63662529916532	3.62673950517357	3.94749330821572	3.60588086667874	3.70337619385042	4.10221973265553	0.243315690483395	0.667940885765223	0.908954537946728
Merged-chr10-75712741-2	chr10	75712241	75713241	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	51616.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	2.04416204256663	2.32390795702076	2.11146119313976	2.30384815612969	2.13110469076495	2.38695601115318	0.737394131556573	0.422249364231139	1
Merged-chr9-104002536-4	chr9	104002032	104003032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172460)	promoter-TSS (NM_172460)	-12.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	5.93131423704724	5.90746494342386	6.14899243627191	5.77812730196505	5.8344639733936	5.77612630532668	-0.341289581541155	0.257965905658977	0.655434580539014
Merged-chr5-86960713-4	chr5	86960202	86961202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34199.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	3.37114844273918	3.44686504749988	3.5204551208845	3.15861465127139	3.11394371913286	3.0160716109707	-1.44655297204586	0.0256701550726702	0.189913956013759
Merged-chr8-56439106-2	chr8	56438606	56439606	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	45862.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	3.91917619087729	3.96018892575686	3.96426952303319	3.87849765892319	3.9438566851961	4.29903508759322	0.286835520906849	0.573250422848373	0.869975581534387
Merged-chr3-69722712-4	chr3	69722232	69723232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133787, intron 2 of 15)	CpG-9222	677.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	7.75647071000267	7.73347857627682	7.0022990077097	7.70451018688134	7.60139234966839	6.80153354058903	-0.16426327898884	0.634870532713793	0.89636184389676
Merged-chr13-54303833-2	chr13	54303333	54304333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67516.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	5.17714089984698	5.30963308961657	5.26067653667192	5.84181507151911	5.92756314131683	5.81277662122428	1.15779746587448	0.000325273767712073	0.00744652244286026
Merged-chr11-106066123-6	chr11	106065641	106066641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027346)	promoter-TSS (NM_027346)	34.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	7.10584246171648	7.35848965392455	7.04720970351038	6.8531071927731	7.36203495011476	7.07869859171638	-0.0898911420048248	0.741154055049199	0.934747201402557
Merged-chr14-20827625-4	chr14	20827131	20828131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9031.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.77914242079507	6.66073547329785	6.79928535871924	7.20832392264578	7.47531914039808	7.36499309891176	0.929338320579124	0.000145973330746967	0.00388303993120002
Merged-chr11-78261576-4	chr11	78261054	78262054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002004)	promoter-TSS (NM_001002004)	-200.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	6.11375044730627	5.41958469099187	6.31585058377873	5.87817553140688	5.85009209108966	6.28509526271174	0.0260976336068726	0.945240625589299	0.987875414328125
Merged-chr5-16466578-4	chr5	16466168	16467168	+	833.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-86827.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.0260760478982	6.36134463317979	5.86865696964163	5.91289030731629	6.07305793174672	6.09623367732002	-0.14507320046868	0.642360333819137	0.899398873915991
Merged-chr1-170976077-4	chr1	170975580	170976580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010187)	promoter-TSS (NM_010187)	-9.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	3.02054776244964	3.03012435306896	2.845753709028	3.09037537667675	3.21406227251502	3.2242803254702	0.910568950446435	0.178198642293503	0.559276830911593
Merged-chr7-24638268-4	chr7	24637768	24638768	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133743, intron 2 of 4)	intron (NM_133743, intron 2 of 4)	1698.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	2.70003812405825	2.62571485549716	2.53170451426851	2.70816622515682	2.66014223919338	2.9749204269341	0.849743344097189	0.268910411144392	0.66606540174
Merged-chr7-75787566-4	chr7	75787129	75788129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60709.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.37213793430895	6.39714241942817	6.57695820125002	6.52757455811395	6.71940520650107	6.51561564753295	0.245830559759854	0.358932431428545	0.74519810754794
Merged-chr6-91441899-1	chr6	91441399	91442399	+	547.0	f1_balb.idr	TTS (NR_038153)	TTS (NR_038153)	912.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	5.01784828419299	5.26524102971863	5.27051396728075	5.05460339512242	4.93944130701577	4.72397710151541	-0.564345255389769	0.141572207785265	0.502257195591213
Merged-chr14-31495854-2	chr14	31495354	31496354	+	709.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359848)	promoter-TSS (NM_001359848)	775.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	5.77077338617327	6.1689353742227	5.66007601016134	5.97340734092865	5.84388748089539	5.30543212015144	-0.257047735244903	0.487281321832439	0.828379796079542
Merged-chr4-132529483-4	chr4	132529009	132530009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5905.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.91071919856758	5.91038567178144	5.85302244996405	5.93721989934296	6.03847083457689	6.16250546975371	0.262756827875707	0.370849189788186	0.755074250223784
Merged-chr11-71003266-2	chr11	71002766	71003766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178367, intron 1 of 11)	intron (NM_178367, intron 1 of 11)	1166.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	3.42580435792347	3.57377244714228	3.43311656918822	3.18292425764377	3.58012852631593	3.33330354152879	-0.361011701355398	0.563154678369193	0.865818711364235
Merged-chr19-12476004-2	chr19	12475491	12476491	+	836.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	15212.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.1150719658181	4.89560372763813	5.04432219416208	6.10403459207904	6.38540041194513	6.06083757911244	2.21097973767612	5.51405562884438e-11	7.75022872913654e-09
Merged-chr5-122901853-4	chr5	122901349	122902349	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-1499.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	5.1727683397371	4.40879972806657	4.43202657698267	4.8120198377416	4.59263849036839	4.71897251648659	-0.0574056365894304	0.905162614296926	0.97825170530197
Merged-chr13-52583501-4	chr13	52582990	52583990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	53.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.97540897630226	8.02483908214123	7.88819371349635	7.86532516165294	8.22185540764876	7.79410259598745	0.0240494829133924	0.918770062134612	0.981830247255695
Merged-chr9-107985282-4	chr9	107984764	107985764	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026597, intron 1 of 1)	intron (NM_026597, intron 1 of 1)	652.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	6.65984614786852	6.10832231183518	6.14270369777774	6.39789124778094	6.4588930276861	6.01534016649512	-0.0365829639122912	0.910957728006652	0.979998585989935
Merged-chr10-59333628-4	chr10	59333123	59334123	+	779.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	RSINE1|SINE|B4	10327.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.97133683488196	5.34570074559792	5.09682131616159	5.40738078108666	5.17216140426876	5.12688758152528	0.184193113927965	0.621960473471681	0.890924463951533
Merged-chr7-67262137-2	chr7	67261637	67262637	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	B3|SINE|B2	39521.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.79343745251375	2.79217776803445	3.33157519904095	2.91091450834222	2.92243548232647	3.35104531613419	0.35151406303049	0.641568610766403	0.899095902698814
Merged-chr2-25054991-2	chr2	25054491	25055491	+	869.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146251)	TTS (NM_146251)	612.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	4.91391031875059	4.74963681255101	4.66650919152389	4.98991474841908	4.9000578321345	4.85372259263237	0.290853614262426	0.456574029849957	0.811723269017205
Merged-chr5-109558822-7	chr5	109558305	109559305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016715, exon 1 of 8)	exon (NM_016715, exon 1 of 8)	188.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	7.67888339949711	7.93129592439121	7.77809440652132	8.13742866978586	7.93681788765787	7.764991121666	0.224750511653453	0.335286681075661	0.72542862756627
Merged-chr16-10975114-2	chr16	10974620	10975620	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	GSAT_MM|Satellite|Satellite	18001.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.67797870356428	5.90758350585936	6.30872426719734	5.66279769529194	5.959318786968	6.25918570305511	-0.00756810334112443	0.982966262756555	0.996200895077944
Merged-chr17-46855902-2	chr17	46855402	46856402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24489.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	6.47758121463417	6.72736556806817	6.0325821268012	6.08648324966619	6.26421357446057	5.94413631218232	-0.567354089067734	0.0804081652957932	0.37526516450347
Merged-chr2-160074856-2	chr2	160074351	160075351	+	765.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	58198.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	2.89908649099285	3.06268906749144	2.846691778621	2.83477558667798	2.85079423419574	2.98071885664461	-0.273989649160547	0.695241392560465	0.919230570201314
Merged-chr6-29468172-4	chr6	29467661	29468661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	378.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	7.98512000005929	8.04534962595101	7.71186330209969	7.78931984288068	7.87129883278953	7.55627358197186	-0.251420577788559	0.287670272500038	0.685014682030254
Merged-chr10-95507052-4	chr10	95506552	95507552	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5103.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	4.74579612140006	4.61562880586624	4.78591868778832	4.80395328074776	4.66669325388866	4.69706255842773	0.022171443033008	0.955858897245783	0.989783387008628
Merged-chr5-112265664-4	chr5	112265149	112266149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	9829.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	7.72209452139071	7.55214025095091	7.74708463192156	7.85255614417595	7.9695795277475	7.80356121731917	0.297821264318004	0.176871135210778	0.557486776719513
Merged-chr8-47713465-4	chr8	47712962	47713962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359133, intron 1 of 2)	CpG	469.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	6.5246155024379	6.56931322435547	6.82509448842316	6.7449541973749	6.74080632555605	6.92504851953149	0.257552613974297	0.326987531713393	0.719293040205362
Merged-chr6-57755923-2	chr6	57755423	57756423	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	53468.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	2.83194442291642	2.69225697063859	2.92165720772412	2.58027453254957	2.75230482850773	2.93591588436113	-0.281340999169995	0.706993749452359	0.923161381966479
Merged-chr7-122459803-4	chr7	122459346	122460346	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170721.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.01005928106313	5.35846303327714	5.13441412957738	5.35514464904372	5.09621170379652	5.19878234596999	0.0780642457476249	0.832683647088267	0.960721158746132
Merged-chr19-4070925-4	chr19	4070416	4071416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-11469.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	6.16588349155268	6.21707196570679	5.97506711667486	5.93025196143711	5.75129421328523	6.10339756947123	-0.35695363241662	0.238817769103516	0.635539113220622
Merged-chr10-117330803-4	chr10	117330345	117331345	+	933.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37977.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	3.1030998310721	3.23728690537427	3.26597216263982	3.18534777842745	2.88096193462058	3.16809967177824	-0.534696449817256	0.423178217392702	0.791863924096789
Merged-chr2-5033869-5	chr2	5033449	5034449	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 9 of 13)	intron (NM_001356487, intron 9 of 13)	-21158.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	5.84844479426005	5.60852964906727	5.77450109553048	6.62501680687786	6.56004222622291	6.11072921999378	1.21743286637704	9.09180500433343e-05	0.0026194976135754
Merged-chr11-5513117-2	chr11	5512617	5513617	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7524.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	6.90200075894287	7.03919353919513	7.22930399160757	6.80693886135405	7.07655057564296	6.63348330954345	-0.296679496291245	0.275737448505264	0.673242318833586
Merged-chr15-57694996-3	chr15	57694502	57695502	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199449, exon 1 of 4)	5' UTR (NM_199449, exon 1 of 4)	335.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	8.89264264177918	9.57382277824539	8.91582106843948	8.60247669319267	8.83355917818067	8.40689669788552	-0.743508816471381	0.0064307740374491	0.0735117249770661
Merged-chr14-8112126-3	chr14	8111649	8112649	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13938.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	6.43251101701132	6.39139063259061	5.64146020159256	6.68605830293046	6.31472813873913	6.01738940637194	0.261490829949307	0.480577631762852	0.824577865423721
Merged-chr11-103984247-4	chr11	103983710	103984710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304574, exon 5 of 5)	3' UTR (NM_001304574, exon 5 of 5)	17339.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	7.92396842066036	7.76646197002177	7.6687402706964	7.65577673720543	7.77026819402679	7.8698546570262	-0.0416965497034171	0.852910766268755	0.965564612784906
Merged-chr10-40247033-4	chr10	40246531	40247531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023323)	promoter-TSS (NM_023323)	8.0	NM_023323	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	6.96293573345302	7.28020086831834	7.08465258271927	6.92374171630863	7.34088121696884	6.98151690643178	-0.0196093177645876	0.941718792817752	0.987044948326294
Merged-chr2-181186748-4	chr2	181186267	181187267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151465)	promoter-TSS (NR_151465)	-55.0	NR_151465	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	6.40473343987603	6.68554844493003	6.89592307808258	6.52715249863128	7.22439165115896	6.61730166099022	0.263564829341368	0.415004493213376	0.786115461363139
Merged-chr6-116208091-4	chr6	116207597	116208597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	64.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	8.8593351151169	8.94806459134459	8.41810041267829	8.53999449705719	8.94502763829801	8.03957689677481	-0.269247610404595	0.363791682867104	0.74933829766087
Merged-chr15-96743436-4	chr15	96742933	96743933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43705.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.47199907929228	3.11729682869302	3.21894012952217	2.81026948279661	2.73559772622148	3.11903700575648	-1.85950977553196	0.0124207881949335	0.117098226164064
Merged-chr10-79670442-4	chr10	79669947	79670947	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	intron (NM_148934, intron 1 of 1)	1037.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	4.36122465533563	4.2119915235177	4.41605111527436	4.34198348304672	4.5202472766312	4.85758614631206	0.640612626944444	0.160474907636435	0.533152170677279
Merged-chr2-166905995-4	chr2	166905508	166906508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023565)	promoter-TSS (NM_023565)	-88.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	8.74313412971434	8.69783880483743	8.37808718289872	8.26026365570895	8.53266099740221	8.20501053627409	-0.38153661813733	0.0988650546855231	0.419333642002316
Merged-chr1-89016030-4	chr1	89015523	89016523	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040471)	promoter-TSS (NR_040471)	-90.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	2.70098409665145	2.92470427242121	2.86170358113122	3.0235698621586	2.91417478515635	3.16836938599554	0.96779249546275	0.172706387060562	0.55131408940901
Merged-chr11-97998566-2	chr11	97998066	97999066	+	933.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2393.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	4.61291108573625	4.2745972933124	4.35360542785483	5.06077873200091	4.82984454515743	4.72983498354591	1.08341496898246	0.0124336142401477	0.117179315176601
Merged-chr5-86118797-4	chr5	86118287	86119287	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 31 of 32)	URR1B|DNA|hAT-Charlie	47041.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	6.84146731368594	7.42246328721182	6.60150591730308	7.39961854126884	7.41477131455235	7.01719057193571	0.417425212862877	0.187346527906036	0.572271506774537
Merged-chr16-59498825-1	chr16	59498325	59499325	+	809.666687	f0_balb.idr	intron (NM_174848, intron 16 of 18)	RLTR45|LTR|ERVK	27050.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	3.20447039541689	3.16135486642942	2.99370662787003	2.6502516342622	2.63833090048723	3.00725707592738	-1.8442006155339	0.017433213477994	0.14737202347627
Merged-chr2-137116903-4	chr2	137116439	137117439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013822)	promoter-TSS (NM_013822)	-419.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	3.89758039135893	3.9438702220971	3.58630316136017	3.37226368204901	3.38085968769309	3.54615541870788	-1.41539046360198	0.0152887344670747	0.134375401644624
Merged-chr2-131352907-4	chr2	131352403	131353403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-11.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	5.36889923761402	5.31204710353114	5.30696934498769	5.11648863611813	5.17156332574568	4.70104358757659	-0.617783586408588	0.106198433003261	0.435086548852223
Merged-chr2-132119013-2	chr2	132118513	132119513	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	26095.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	3.08848481802069	3.37766697178876	3.39243883403349	3.34624067241316	3.18342608529721	3.40917490010915	0.0802475234748344	0.898858080067122	0.976432549466174
Merged-chr4-55817251-4	chr4	55816761	55817761	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284786.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.30874455488032	3.25067472648979	3.19281009732792	3.27720419182649	3.27132933790575	3.26500911883875	0.0698853427279407	0.909328251858971	0.979433534093496
Merged-chr14-105779478-3	chr14	105778968	105779968	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117351.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	2.42364220517355	2.47497676676426	2.64900305243248	2.26191681351727	2.3110457760052	2.27938288118893	-1.52421503212013	0.077193135882988	1
Merged-chr15-88820265-2	chr15	88819765	88820765	+	760.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	619.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	5.4841097954543	5.03181256944392	5.08283119780469	5.20268898097528	5.09302027012333	5.07692898290393	-0.198980397870607	0.59961758625462	0.881122597050421
Merged-chr6-48433612-2	chr6	48433125	48434125	+	584.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	11465.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	2.21824960221653	2.19631958462002	2.44187231807602	2.58273310126282	2.47854181914495	2.70304002218767	2.04028380550766	0.020731074714393	1
Merged-chr6-29348953-2	chr6	29348453	29349453	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285412, intron 1 of 6)	intron (NM_001285412, intron 1 of 6)	847.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	5.97327945090981	5.8462207275833	5.46393991303222	5.7623964330321	5.77412124492832	5.67680329709083	-0.0921415536683077	0.779732236043088	0.945896107312523
Merged-chr1-37542723-3	chr1	37542212	37543212	+	657.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1696.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	3.18886331450677	3.20045787605967	3.1317296626645	3.34237828550998	3.47742097599591	3.74243676929863	1.37443003532641	0.0292495417259183	0.205512314056017
Merged-chr6-89361185-2	chr6	89360685	89361685	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	intron (NM_008881, intron 1 of 31)	1428.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	2.86459844954824	2.81543023853312	3.06627978068418	3.01975846290363	2.55153226783265	2.64587633653407	-0.803558252445905	0.307988054817358	0.70399988465522
Merged-chr5-140736594-2	chr5	140736094	140737094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12467.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.73928641320703	7.01477273703886	6.46801170394162	6.44991868224719	6.52363300534235	5.56433760908487	-0.806586512878408	0.0334971119316739	0.223425065299457
Merged-chr11-74833558-2	chr11	74833058	74834058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2634.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	5.52586097555625	5.09880501993155	5.55384114188929	5.34658762822261	5.33915698283963	5.32696406524342	-0.126155619739605	0.725772236103694	0.929707128236285
Merged-chr7-3629788-6	chr7	3629245	3630245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027328)	promoter-TSS (NM_027328)	184.0	NM_023524	69714.0	Mm.358730	NM_023524	ENSMUSG00000006335	Tfpt	2400004F01Rik|AI450389|Amida|FB1	TCF3 (E2A) fusion partner	protein-coding	6.4745539495719	6.86539909370324	6.78997966352773	6.71573190726803	6.54936459218069	6.61183535966848	-0.14808424770369	0.586890652326732	0.875701838845342
Merged-chr4-134094135-4	chr4	134093651	134094651	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	922.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	4.5669340646822	4.4131818903328	5.07355454705996	6.64879910187444	7.25758321718551	6.7904005495816	4.35754289485031	2.39838762445371e-27	7.12732276626945e-24
Merged-chr7-16050782-2	chr7	16050315	16051315	+	788.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21030.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.57145187233973	5.73741995941768	6.02263479811428	5.7111183539502	5.49970491233019	5.7115908855438	-0.259428786480359	0.434971386929098	0.798753078814766
Merged-chr17-26244301-4	chr17	26243817	26244817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-75.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	8.16750745687692	7.89240647138208	7.71998056216398	8.0153883069764	8.31406051579026	7.79322911626288	0.173745547861124	0.502533064163981	0.836562439638842
Merged-chr1-24698644-3	chr1	24698164	24699164	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	19746.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	6.35918598080531	6.11249229516578	6.60745681980364	5.87020195127853	5.47827999860259	5.7853715584619	-1.13047897318737	0.000529927947842291	0.0109851132745544
Merged-chr2-167951482-4	chr2	167950976	167951976	+	892.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	19149.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.58675318420152	6.66725336755909	6.00603927089758	6.11950845824054	5.80791013454559	5.99456561938877	-0.817617589567571	0.0118920040249867	0.113527979682319
Merged-chr7-45718003-4	chr7	45717488	45718488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203280)	promoter-TSS (NM_203280)	14.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	8.3975053735137	8.65626453344205	8.23678759050674	8.34725529941093	8.58918741067556	8.06788534778569	-0.120774194503973	0.628103064355051	0.893508518159715
Merged-chr9-57468087-4	chr9	57467534	57468534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020270)	promoter-TSS (NM_020270)	26.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	5.48828941471792	5.58828222951787	5.62228215488701	5.56787595227585	5.57186371532777	5.45682718143245	-0.050262226947101	0.875876633940283	0.971136321106511
Merged-chr5-125408145-4	chr5	125407651	125408651	+	957.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18134.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.16336909552073	4.13391280307966	4.54687125539745	4.45871121229008	4.28851180718445	4.79235538089516	0.605367705004461	0.20792388005894	0.598762332515681
Merged-chr17-86663736-4	chr17	86663231	86664231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-90133.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	7.28565827191307	7.59472217694717	7.16194839001583	6.20443951988428	6.68124818742222	6.33390690339604	-1.43198200643566	1.01980109287741e-06	5.51368481716331e-05
Merged-chr7-16046587-4	chr7	16046088	16047088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25257.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.32705017202372	7.2762708956259	7.51336297335966	7.59367724319784	7.33876323871542	7.46094096513889	0.141848436443953	0.548904367157047	0.860071455679488
Merged-chr5-107687969-4	chr5	107687487	107688487	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15493.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	2.42499817109822	2.21233803903273	2.34329513196457	2.50624780802883	2.31037413412855	2.60977177385703	0.930189156696094	0.27318693178513	1
Merged-chr11-52000809-4	chr11	52000289	52001289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009458)	promoter-TSS (NM_009458)	-323.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	8.63387793228751	8.72547371829748	8.13107864286353	8.48947321666762	8.61831756698447	8.13591020223907	-0.128884754866752	0.624043578270062	0.891775603426165
Merged-chr4-53827003-4	chr4	53826506	53827506	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028053, intron 1 of 5)	Charlie1b|DNA|hAT-Charlie	961.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	6.01993862661991	6.16660153828701	5.88465069249136	6.00036969417184	5.93352669468569	5.2763146529492	-0.425657838910008	0.234516851513093	0.630628663776774
Merged-chr3-136078774-4	chr3	136078271	136079271	+	864.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-238502.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	5.04691636956011	4.79146538199307	5.40673070800652	4.85028816573911	5.31113796034647	5.41385451425271	0.239840485541126	0.56671892628769	0.867595459569954
Merged-chr9-90261515-3	chr9	90261012	90262012	+	958.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9257.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.98395775949359	5.08434925286443	5.3295194540586	5.75545205079477	5.42969911789075	5.64590631209706	0.949832619374958	0.00746203732881832	0.0818375118039165
Merged-chr1-151250909-4	chr1	151250381	151251381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-93605.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	7.80651916154865	8.11415242933783	7.73204826816385	7.79886525371898	8.06558266320754	7.33019304710702	-0.173380271203908	0.53684660157704	0.854215768737235
Merged-chr7-88231795-2	chr7	88231295	88232295	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-46290.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.96092563270142	5.93756884349011	5.51291297839932	5.92988437223756	5.81988387404697	5.5460276817076	-0.0877620465237852	0.794326527905004	0.950669146394332
Merged-chr10-127480759-2	chr10	127480259	127481259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20927.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	6.98823346535096	6.96764555382846	6.73749824489598	6.66936744984444	6.89894150487702	6.79623028566658	-0.177530985043602	0.489164794201259	0.829459847891797
Merged-chr2-57123709-4	chr2	57123221	57124221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	282.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	6.50354007864359	6.21871024340608	6.38097164286515	6.456833590808	5.93295054866376	6.02013356639307	-0.356412839010495	0.253965295389704	0.651117231535132
Merged-chr2-131174842-4	chr2	131174344	131175344	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027641)	promoter-TSS (NM_027641)	-34.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	3.9671489530429	3.45067573754345	3.90805390933832	3.38594052904225	3.60314039398676	3.97604636684052	-0.394210049118833	0.524606895948034	0.848752537154544
Merged-chr2-60905420-4	chr2	60904914	60905914	+	913.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-23976.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.57081647083249	3.55423782942012	3.73628100113603	3.45081892857624	3.33167454471631	3.65664793767338	-0.510396823621673	0.379238216967975	0.761692242666705
Merged-chr9-107563229-4	chr9	107562744	107563744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019742)	promoter-TSS (NM_019742)	-11.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	4.88369303856571	5.08005889855372	5.10420771366766	4.75890137629834	4.95799210709834	4.6886433827955	-0.450338403713148	0.252404033631357	0.649835540406508
Merged-chr10-59227495-2	chr10	59226995	59227995	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	5573.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.21725216292198	3.16527482303728	3.33421186703687	3.34262351098326	3.25118652054071	3.45863076478814	0.452167350441068	0.461114054782377	0.814909378551326
Merged-chr10-117377614-2	chr10	117377114	117378114	+	890.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-641.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	5.96875440983564	6.06897675275207	5.7479881029348	6.03182214392881	6.64283623155112	6.06535101358642	0.593031569974573	0.0780501166829198	0.368845675182172
Merged-chr10-127678172-4	chr10	127677717	127678717	+	856.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173732, intron 1 of 6)	intron (NM_173732, intron 1 of 6)	1152.0	NM_001113211	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	4.24989622488011	4.04586506470614	4.01090258585569	4.00654297036552	4.24226248704868	4.2219783155867	0.145556756339697	0.764202278643168	0.941958626520407
Merged-chr12-80258555-2	chr12	80258055	80259055	+	626.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	1816.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.25713461868149	4.2134502654602	4.13607284586555	4.46483408078654	4.11192481161103	4.25262711707813	0.204176646689177	0.664290538054726	0.907585158243155
Merged-chr17-56762190-4	chr17	56761665	56762665	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2586.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	4.65191807137516	4.44891500847068	4.70088382811613	4.88364006616041	4.3227318636361	4.47977388891764	-0.0416804440254328	0.926948931427727	0.983578869536024
Merged-chr8-106929670-3	chr8	106929177	106930177	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6073.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	5.00621214669486	4.94883424306975	5.20300237147208	4.44153842102038	4.29158698111697	4.17337810057106	-1.77496820873326	4.8106068978518e-05	0.00153012606558277
Merged-chr16-55755628-3	chr16	55755138	55756138	+	931.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66500.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.55584045367387	5.31841357716688	5.45418832497887	5.73986183656255	6.1151235286141	6.23051725208646	1.08069360662798	0.0012002469310514	0.0207543945633675
Merged-chr19-10177316-4	chr19	10176818	10177818	+	881.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	-5570.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	3.63276292708046	3.60863046885436	3.72018914266059	3.55370269156012	3.18204534531778	3.47498124127287	-0.904244571659602	0.131894692518449	0.485670379921012
Merged-chr17-81424566-4	chr17	81424071	81425071	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	313816.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	2.09054514344004	1.92020880991513	2.11744741981265	1.7330255173596	1.75280161256239	1.92704189368586	-2.31231041127189	0.0362844143452828	1
Merged-chr2-163995073-4	chr2	163994588	163995588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018753)	promoter-TSS (NM_018753)	-109.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	6.98543453323594	7.20247294847796	7.34928832836927	7.24432884167789	7.11302001618983	7.29831292717512	0.0522185804390427	0.833107167876078	0.9609390374781
Merged-chr4-139579185-4	chr4	139578678	139579678	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4458.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.2698275399281	3.99434774759918	4.18618966971145	5.27241454736265	5.28543615885836	4.88691720457655	2.4651515643091	3.71176743120192e-08	2.96399946655901e-06
Merged-chr16-91409526-2	chr16	91409026	91410026	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	3291.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.57016517577812	5.57406522258811	5.9220902036952	5.86300465411172	5.94898324756057	5.71214934399581	0.300091079284993	0.351447643757571	0.739299452698803
Merged-chr9-22467783-3	chr9	22467276	22468276	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018739, intron 1 of 5)	CpG	580.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	6.60472680752848	6.58318004533468	6.55047712928141	6.30254259156028	6.34297194811336	6.33451512594377	-0.41222588401741	0.11512128796116	0.452886961783
Merged-chr9-10566008-4	chr9	10565524	10566524	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033359, intron 2 of 20)	intron (NM_001033359, intron 2 of 20)	338702.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	3.19308812241688	3.28743713966573	3.5325063953104	3.21721900979997	3.64922377998143	3.21228427716325	0.171937982902213	0.793678630118046	0.950531747588938
Merged-chr13-58687077-1	chr13	58686577	58687577	+	687.5	f0_balb.idr	Intergenic	Intergenic	75234.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	4.00959911750844	4.16682519090903	4.46145580911067	3.90884394977468	3.84513872821747	4.20286848865095	-0.668943333059434	0.192603489029681	0.579607635268779
Merged-chr7-4148474-3	chr7	4147974	4148974	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172736)	TTS (NM_172736)	1398.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	6.6738407071005	6.63786081753371	6.81058385334594	6.61709831359514	6.70658976165641	7.10451744422715	0.176359184602078	0.522858133579465	0.847821876232682
Merged-chr12-87393575-4	chr12	87393079	87394079	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	4.27739799850709	4.76493922885128	4.74499735879935	4.4579457390908	4.4633882517601	4.84511276054164	-0.0477825760903256	0.917346507939704	0.981588017376699
Merged-chr6-57796746-2	chr6	57796246	57797246	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	28379.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	4.69293274442772	4.50937174349283	4.57050435780216	4.37468003911502	4.25282587315872	4.95815829074988	-0.0970500667521544	0.837891490473263	0.962282271563232
Merged-chr9-67842964-4	chr9	67842467	67843467	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	2571.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	5.48722565763259	5.7047956666353	5.74674568404751	5.65307187502712	5.26909332544853	5.42390539318674	-0.364049420595169	0.287321712269441	0.684644217183488
Merged-chr17-78915916-2	chr17	78915414	78916414	+	624.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	-585.0	NM_001177403	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	4.30377635415485	4.2892774822319	4.09765124842917	3.9680920578934	4.18185989222033	4.25956791022105	-0.275713780719731	0.563888293500066	0.866014520598636
Merged-chr19-3322398-4	chr19	3321917	3322917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-884.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	6.60857869669322	6.76333911398554	7.06546882680334	7.24587299318384	7.46068278827816	7.32253566947783	0.807189994415688	0.00187975549742478	0.0294503286442706
Merged-chr5-148473209-4	chr5	148472719	148473719	+	877.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-73315.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	3.44923481647873	3.46739962113543	3.24691969145	3.77130920992124	3.18173641844006	3.85784439819569	0.854677210095759	0.195918615522081	0.583652434941867
Merged-chr5-95919582-4	chr5	95919083	95920083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37356.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.81043837517104	4.98147484875659	5.06883179778979	4.3784663157421	4.30845662757067	4.90284489067529	-0.961648569477049	0.0306728786464872	0.211768078859684
Merged-chr5-24586743-4	chr5	24586239	24587239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133913)	promoter-TSS (NM_133913)	-11.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	5.16160559603999	5.58135392768332	5.53962837144254	5.2499776200477	5.28571659488084	5.21128069810729	-0.367990165123634	0.304781507596749	0.701115228393427
Merged-chr4-15080648-3	chr4	15080147	15081147	+	827.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178617, intron 3 of 12)	intron (NM_178617, intron 3 of 12)	68484.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	2.61548185914905	2.62511412306181	2.74967559208727	2.29823350050111	2.27211365235922	2.51732950970578	-2.00463010608149	0.021620558534878	1
Merged-chr19-5512913-4	chr19	5512409	5513409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2392.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	7.53927252427611	7.3369693244682	7.27864117030704	7.45914227832011	7.82711564715902	7.39317549307452	0.278213809203186	0.273405671798737	0.670659339634344
Merged-chr9-53384503-4	chr9	53383983	53384983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	CpG	460.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	8.05823804619517	8.23823171403987	8.10678610134568	7.94786680544205	8.18643941397551	7.82589357462174	-0.190580825118366	0.400843321996832	0.777027234158915
Merged-chr3-108990330-4	chr3	108989827	108990827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 4 of 10)	intron (NM_001163567, intron 4 of 10)	37280.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.95768775395334	4.02275143469041	3.74493810336128	3.98969565876736	3.95878677359672	3.76130349514302	-0.0263014494919296	0.959824044998259	0.990242512723989
Merged-chr6-71444948-4	chr6	71444448	71445448	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4311.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.75557802199257	5.8612663457253	6.04621047401627	6.14221408217176	5.97075429523394	5.84938477351434	0.198149921793438	0.517570621010452	0.844646834830098
Merged-chr18-24142149-4	chr18	24141697	24142697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-20378.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	4.2423973919523	4.72942783990967	4.66835905603876	4.35737735453313	4.44500286562483	4.73345459666634	-0.119320610711217	0.796216161861431	0.951410019719943
Merged-chr16-32194956-4	chr16	32194450	32195450	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15150.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	4.63671621821268	4.40412597656796	4.40622330873091	4.33363871395909	4.2786293576231	4.55679518829518	-0.268046094363515	0.547298660724377	0.859256588783723
Merged-chr4-136894121-4	chr4	136893612	136894612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	6.29294827614178	6.16858103719866	6.35868070971037	6.21477848956815	6.03024096630412	6.13903803681469	-0.243210151680621	0.389233744963858	0.769015431167891
Merged-chr10-22308342-4	chr10	22307852	22308852	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	1632.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	5.39969992460844	5.33335436171356	5.52412613970505	4.35339554785623	4.60413643984663	4.62627918925684	-1.94660919345685	1.29577607087394e-06	6.8153562139873e-05
Merged-chr10-118857240-3	chr10	118856748	118857748	+	967.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11655.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.93970407389306	4.82881518377294	4.47703252233133	4.06569059711227	3.79787309205199	4.36876606572684	-1.81632384361649	0.000281255547612576	0.00660161117228412
Merged-chr16-33944003-2	chr16	33943503	33944503	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 11 of 14)	intron (NM_001145884, intron 11 of 14)	23035.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	2.94471949850366	2.96692092598301	3.34554072931722	3.11939220311876	3.06855820818095	3.20098562199338	0.164841995786724	0.806891540862647	0.954399610026228
Merged-chr10-67105110-3	chr10	67104574	67105574	+	696.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8086.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	3.99464691396216	3.95995375659708	4.08372767814707	3.96211621098642	3.48181062748364	4.27977307688892	-0.204496170014741	0.723797119548514	0.929128417950564
Merged-chr11-54029207-4	chr11	54028688	54029688	+	928.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	6.44243138390676	6.75064704398505	6.64439278288094	6.07438327319075	6.49031104305882	6.06602308417339	-0.614106858649732	0.0420540009882847	0.256805321754968
Merged-chr4-142076593-2	chr4	142076093	142077093	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-7705.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	5.79588648982231	5.54778845595386	5.94351026288129	6.83982239969834	6.84527959994932	6.05522963198728	1.46536136865402	2.06347165365713e-05	0.000749442816924933
Merged-chr7-114081739-1	chr7	114081239	114082239	+	681.0	f0_c57.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	36042.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.97485699648109	3.85226409273867	3.98231414673761	4.28582873880601	4.44856381253019	4.45904131511414	1.31349262467974	0.00567238032682251	0.0669295834138184
Merged-chr2-38481348-4	chr2	38480880	38481880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30317.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.70843095658431	6.12100192363627	6.64710991451745	6.39280359466821	6.40464676479514	6.69030728162043	-0.0287072842459697	0.92608229823313	0.983305773102619
Merged-chr1-59914087-4	chr1	59913566	59914566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	1060.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	8.33079937941347	8.46728177355653	8.07690583184134	8.41372891434118	8.50938673087077	8.43952612949591	0.205821587856153	0.348008822945097	0.735982909356061
Merged-chr12-4918274-4	chr12	4917791	4918791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 1 of 27)	intron (NM_001362349, intron 1 of 27)	938.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	7.11715178284629	7.41944218032868	7.12811673860808	7.17031985673506	7.13725575756653	7.32691784980172	-0.037994667326507	0.877859130920691	0.971748379457442
Merged-chr5-107869873-4	chr5	107869370	107870370	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	intron (NM_007964, intron 1 of 17)	5237.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	4.48515382759878	4.58338512874601	4.48738349513681	4.59746657398754	4.72452340421688	4.90102042543603	0.523430798220276	0.208189996412095	0.599041414336639
Merged-chr2-112449348-4	chr2	112448855	112449855	+	856.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5670.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	3.70112365818158	4.1404172195306	4.08644424739435	3.61423835672234	3.42851538399555	3.72334142128299	-1.33674788866598	0.01914804407499	0.15701886778277
Merged-chr18-61099164-4	chr18	61098649	61099649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6423.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	7.2838691709895	7.29208426112193	7.05153257777638	7.21966849159577	7.47544208464178	7.19909709911869	0.136582760827244	0.579734711480604	0.872595003519464
Merged-chr5-31362083-4	chr5	31361578	31362578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	64497.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	4.2830170015865	4.34274114922378	4.16604624060844	4.05947889753803	4.02047868999538	4.40893764874125	-0.296219941923856	0.537844496908897	0.854867563479425
Merged-chr2-167366895-2	chr2	167366395	167367395	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17717.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.12064212545575	2.9212960026226	2.88892646992643	3.26279282190178	2.86761633779239	3.20510605308306	0.60623802577102	0.390398951789021	0.76958978415218
Merged-chr12-51845106-4	chr12	51844572	51845572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	7.3148147356283	7.74085609664104	7.01329156447997	7.03340520743756	7.13051350070792	6.45662925728281	-0.721880164720974	0.0256561378738063	0.18984401246809
Merged-chr9-35166331-4	chr9	35165833	35166833	+	644.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	9654.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	2.41570477741436	2.31079786336681	2.57259805788549	2.18428238662532	2.17617714482299	2.19930236701858	-1.75873969846385	0.0508639218507594	1
Merged-chr2-31572065-2	chr2	31571565	31572565	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-586.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	4.73352326050976	5.00839566017594	4.63716840435753	4.47147792969456	4.51997656522007	4.62161818209853	-0.654405924366419	0.119137989969052	0.46148847210767
Merged-chr11-32645227-2	chr11	32644623	32645623	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	L1_Mus1|LINE|L1	2568.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.83630404036454	4.50226611192506	4.50045589968404	4.41317626316684	4.59581288523612	4.24213366648463	-0.469685803566568	0.301926165477979	0.698633484641245
Merged-chr11-70849414-4	chr11	70848964	70849964	+	942.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	B2_Mm1a|SINE|B2	4703.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	5.40215751950905	5.25062641341059	5.26424188608055	4.96982001257987	5.51496991718743	5.44895619358069	0.056064923749386	0.880836761385383	0.972620786559158
Merged-chr17-5841404-11	chr17	5840857	5841857	+	965.113647	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025664)	promoter-TSS (NM_025664)	-23.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	8.22669041732723	8.10963630625696	8.00429751267017	8.36063246344185	7.78625725728137	7.77516349868608	-0.156412436931494	0.548814846176586	0.860028357389381
Merged-chr6-47317414-4	chr6	47316894	47317894	+	831.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	72998.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.25763061375542	4.1900951549322	4.14045461401646	3.99219654295799	3.95879667273003	4.11506819369736	-0.524192442845515	0.271752960612542	0.669165290152271
Merged-chr15-58265388-2	chr15	58264888	58265888	+	888.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-50496.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	5.88084897895888	5.2885111686106	5.29363330377753	5.24027336187403	5.48022613646739	4.99528791080317	-0.50609684269708	0.208649335763385	0.599651784024869
Merged-chr9-114793548-2	chr9	114793049	114794049	+	666.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-11556.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.67769512418211	3.85417187089974	4.15771961560771	4.50254386841782	4.63066274912259	3.97585786462179	1.41628258447681	0.00882005379317874	0.0922679200430999
Merged-chr18-34247106-4	chr18	34246623	34247623	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-571.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	6.61963723437908	6.23567311503739	5.95597198250613	6.81157124992143	6.62685413872063	6.27878490774136	0.461686272479131	0.159493214854179	0.53171647187734
Merged-chr3-87375955-1	chr3	87375455	87376455	+	623.0	f1_balb.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-432.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	4.88273760133092	5.10331686240194	4.79026928355972	5.7019280048764	5.58950199308877	5.65314486340217	1.40150068828135	0.000103193482822199	0.00291068587073544
Merged-chr8-57540382-4	chr8	57539864	57540864	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	28521.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	5.24668398808609	5.17249613471023	4.7131362418256	4.94849759311208	4.98844461276846	5.34646899455321	0.0444942292779496	0.913291901912953	0.980560320145079
Merged-chr1-182292239-4	chr1	182291749	182292749	+	821.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-8585.0	NR_015458	67330.0	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	3.68628512243948	3.65597691151062	3.44477195360351	3.42189189337231	3.37924163119585	3.45977081253567	-0.693208750405165	0.232413386499005	0.628761339174128
Merged-chr3-84814437-4	chr3	84813959	84814959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1118.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	8.43027060644292	8.52851567457537	8.08697822711771	8.07663704405338	8.40982525161984	8.06223925584237	-0.23648344919349	0.33106487931146	0.722380198189226
Merged-chr5-64265361-1	chr5	64264861	64265861	+	574.0	f0_balb.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	35004.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.64983598259369	3.66525643082871	3.76390834500058	4.06157160136717	3.65252045057113	3.93356045518713	0.640285558882471	0.23886023466698	0.635555206132325
Merged-chr2-84427885-2	chr2	84427385	84428385	+	645.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2619.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.97037206882485	4.02101015339909	4.08190282261389	3.60822395575748	3.88435566916071	4.19287336440516	-0.341294533234365	0.524992528373049	0.84884700169621
Merged-chr6-5508566-2	chr6	5508066	5509066	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12288.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	6.26133690423557	6.46660619449778	6.29014716819667	5.51589294202909	5.45839422064489	5.7478848235465	-1.36991559772206	6.6213625089437e-06	0.000281097107981728
Merged-chr2-132029924-4	chr2	132029431	132030431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175445)	promoter-TSS (NM_175445)	57.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	5.86197208697303	6.25766287512322	6.23260587951693	5.49595899307765	5.94116236286563	5.9323290901474	-0.557239698508138	0.0947501111641352	0.410324099601611
Merged-chr5-135085323-2	chr5	135084823	135085823	+	951.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4567.0	NM_001359237	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	3.32827106914738	3.41549993716187	3.5421756392282	3.63418941552517	3.47738723124533	3.55943852424323	0.480565116953511	0.405141856589739	0.780049815379569
Merged-chr10-29206900-4	chr10	29206395	29207395	+	764.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4748.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	2.84858344492087	3.18624122906586	2.95022111810567	2.60929157469243	2.72267365605569	3.02274579184163	-1.05398434650444	0.169651904007793	0.546638616352246
Merged-chr19-18712288-1	chr19	18711788	18712788	+	545.0	f1_balb.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-948.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	4.13759836674592	4.65086819788357	4.72029334097231	4.19988432780797	4.33000903554704	4.60060394100545	-0.359534260700137	0.45995887992848	0.814054033257842
Merged-chr2-26389299-4	chr2	26388792	26389792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173180)	promoter-TSS (NM_173180)	24.0	NM_001085407	68112.0	Mm.253771	NM_026563	ENSMUSG00000026927	Sdccag3	C330016H24Rik|C630038K21Rik	serologically defined colon cancer antigen 3	protein-coding	6.63001536265589	6.44037924445965	6.45381723712282	6.63183372589087	6.33658656481277	6.32054648484774	-0.120085013524217	0.665651366482038	0.907880610488534
Merged-chr17-43534990-4	chr17	43534496	43535496	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254953, exon 3 of 3)	exon (NM_001254953, exon 3 of 3)	8643.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	4.28589235587573	4.58201845429894	4.69339557062199	3.9818323323534	4.35580156875992	4.49208964099728	-0.603541900908958	0.213402776627637	0.606345167752515
Merged-chr18-39481725-3	chr18	39481236	39482236	+	694.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	5509.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.45127099891287	4.45676105719721	4.44583088180336	4.91520798754485	4.71272192767115	3.99987415955252	0.374812173929674	0.467114475842739	0.817784491371879
Merged-chr7-24629011-4	chr7	24628492	24629492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001102613, exon 15 of 15)	3' UTR (NM_001102613, exon 15 of 15)	-7578.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	5.25350730800586	5.53769219160786	5.19863479797149	5.19120627341745	5.37160190064795	5.29596412970143	-0.111242848332283	0.754524961159302	0.938987682003926
Merged-chr14-73442136-4	chr14	73441647	73442647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56858.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.58157537196879	6.14475384008171	6.31893936776579	6.26464743009759	6.11420967618733	6.52209612922794	-0.103487179075405	0.734428387664587	0.932426757820458
Merged-chr16-34301077-2	chr16	34300577	34301577	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	212950.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	3.98998798888813	3.54433851890724	3.65621992501258	4.49807028172847	4.02502489158678	4.00540370162083	1.3374128717914	0.0188682524070057	0.155439970122005
Merged-chr13-60682396-3	chr13	60681879	60682879	+	851.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80168.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.42398530561164	7.4685265281449	7.21908273896189	7.58399362813585	8.07644195260936	7.50408631221516	0.549482150942228	0.0395780521767888	0.247223360245818
Merged-chr6-124279123-3	chr6	124278627	124279627	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25524.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	6.76987804962577	6.78797469247217	6.69555820034803	6.29976735768156	6.66243275775614	6.481657979518	-0.407614332791543	0.130718800510795	0.483186228268893
Merged-chr1-51930811-4	chr1	51930309	51931309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14831.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	5.47707769937565	5.29987384386332	5.72925078647548	5.3568920420042	5.28114620444669	5.66857209103339	-0.133247796457391	0.709771602171743	0.924091307674955
Merged-chr10-117418139-4	chr10	117417639	117418639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29296.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	7.28913942006256	7.01764053573016	7.28946614234914	7.30664801178993	7.36565839741897	7.18231439675495	0.13523062619365	0.577561645233994	0.872148719828391
Merged-chr4-130914164-4	chr4	130913672	130914672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	L3b|LINE|CR1	838.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	8.85084281986545	8.87260379917067	8.61755190123771	8.73538138996321	9.04763202764426	8.52334812926014	0.00753887118197804	0.974443698730951	0.994276686350905
Merged-chr13-63138624-2	chr13	63138124	63139124	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-101405.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.81554519247961	3.90040016827756	3.8993022036246	3.60965169119623	3.63749902116983	4.14705963130909	-0.190341510092913	0.732629269628498	0.931839011711124
Merged-chr3-59262317-4	chr3	59261819	59262819	+	793.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177855, exon 34 of 44)	exon (NM_177855, exon 34 of 44)	666.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	7.56166724428369	8.0133274127174	7.40205428417531	7.55314882964411	8.03309308454843	7.24351572302461	-0.0428925909709795	0.889900197889084	0.974313026039223
Merged-chr11-70791186-2	chr11	70790686	70791686	+	952.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001045526, exon 5 of 5)	3' UTR (NM_001045526, exon 5 of 5)	21375.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.53954538462848	6.36895974004416	6.42410160441221	6.23169092955117	6.52648540779484	6.55405779170103	-0.00313709782646109	0.990977384493999	0.998113069044251
Merged-chr5-34520114-2	chr5	34519614	34520614	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5670.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	4.03741271302171	3.70372592514325	4.20168291751938	3.8788157552865	3.59978983510918	3.90814801990699	-0.603394682640629	0.274017010135129	0.671469177150542
Merged-chr2-11593539-4	chr2	11593022	11594022	+	588.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 5 of 11)	intron (NM_152824, intron 5 of 11)	9677.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	3.71146541295377	3.40045150668694	3.87966243819671	3.8676406940836	3.51348525311234	3.70139492777279	0.0916049303038326	0.875754919717523	0.971117457237427
Merged-chr10-20882804-4	chr10	20882311	20883311	+	719.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69736.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.52619131645192	3.68311924565695	3.30932847679766	3.66283367545758	3.24040274066395	3.50006449416617	-0.159586428022563	0.798307971051886	0.951930937621884
Merged-chr12-21369685-2	chr12	21369202	21370202	+	868.0	f0_c57.idr|f1_balb.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3930.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	7.49593776371446	7.89934611713985	7.65151707256272	7.98926444003812	8.5786296051811	7.93280284221846	0.730935845164624	0.00855824578207812	0.0903928046503118
Merged-chr6-116673872-4	chr6	116673400	116674400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-64.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.30788331994733	7.10763811022571	7.38817298703657	7.43331599350664	7.49067176332511	7.50635697301307	0.308860109683923	0.185480757310654	0.569615666642943
Merged-chr18-6244352-1	chr18	6243852	6244852	+	541.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2828.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	3.75168418611346	4.15435908418017	4.49151710360947	4.08125753880538	4.0513460647323	4.32118424202587	-0.0218279364046447	0.967581139655023	0.992574844153271
Merged-chr7-25278430-4	chr7	25277900	25278900	+	962.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3779.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	6.63567087436127	6.99050016943998	7.00443988154165	6.8861578477146	7.0965923921252	6.85317898156195	0.110392345094053	0.678737593517318	0.913547139020543
Merged-chr16-21836874-4	chr16	21836342	21837342	+	836.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42495.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	3.77615752928905	3.96819105943171	3.75873222800051	3.88734949826764	3.9402941355036	3.77598289656683	0.100208075939483	0.847743492527784	0.964318271116593
Merged-chr11-59541526-4	chr11	59541016	59542016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-53.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	8.35109346312532	8.43647495407029	8.18715845530569	7.96778893680595	8.28121394032162	7.82664144312283	-0.398956297937314	0.0925624792584557	0.405215908567243
Merged-chr6-113103969-2	chr6	113103469	113104469	+	627.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173005)	promoter-TSS (NM_173005)	-966.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	3.20120488828696	2.92683648181488	2.89524775950489	2.97132142760286	2.69518417275441	3.14728054369784	-0.328524358842897	0.656372128072668	0.904644460166826
Merged-chr15-93253442-2	chr15	93252942	93253942	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	21737.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.50202575368415	3.50106034736523	3.20472859580414	3.30565961942722	3.20001410505483	3.39349738691837	-0.476059167882007	0.44438989979169	0.804158035358769
Merged-chr12-98920585-6	chr12	98920079	98921079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029553)	promoter-TSS (NM_029553)	5.0	NM_029553	76260.0	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	4.83880493160454	4.72399107927325	4.92660560114167	4.97150747573708	4.9359751314235	4.95576523766532	0.283682395083747	0.455979366639201	0.811256559277932
Merged-chr2-6706349-4	chr2	6705886	6706886	+	643.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	RSINE1|SINE|B4	15276.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	6.98472060422573	7.15179683409283	6.66648730552817	7.30387821401709	7.38709641918367	7.063627455974	0.457877731297087	0.0883894916876979	0.394655989576224
Merged-chr11-62646782-4	chr11	62646281	62647281	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1268.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	4.92405089610105	4.6805695565791	5.10723688940446	5.06698821970628	4.88950810172123	5.48603177592515	0.537573608928906	0.195645452062146	0.583395666913835
Merged-chr9-22151024-6	chr9	22150453	22151453	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-5893.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	4.00916585844502	3.82787066551765	3.6588022026585	3.70272018456461	3.7575894628909	3.78402985306107	-0.320490373026729	0.550718154073536	0.860757671622195
Merged-chr13-19418041-4	chr13	19417507	19418507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22194.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	6.47805186949067	6.43204842539951	6.08554310718943	6.6452346499476	6.62406386751337	6.30305088770366	0.302412916819848	0.300620866256171	0.697365586816021
Merged-chr14-52196835-2	chr14	52196336	52197336	+	741.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	CpG	403.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	7.0669073028924	7.11445812118215	6.94301893174808	7.39709585761008	7.05821174690154	7.08337559330947	0.213861020040688	0.395861212791766	0.773172404503882
Merged-chr14-74936464-2	chr14	74935964	74936964	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	B1F|SINE|Alu	11413.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.91396919398901	5.0932300505467	4.80423940568899	4.87789953330151	4.88622465140975	5.05275535209276	-0.0344760789362828	0.92862636812159	0.983838264232875
Merged-chr2-128809106-2	chr2	128808606	128809606	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9197.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.51581099123857	3.47180929247554	3.41480541529495	3.25172681813862	3.08976618608844	3.64129320148948	-0.49749496810839	0.438261740137281	0.800467170211886
Merged-chr15-103550208-3	chr15	103549662	103550662	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-12170.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	4.29012307429581	4.57132002129905	4.53983517335089	4.23493535806904	3.98327876017315	4.3596643244695	-0.748507958951114	0.112695019354854	0.448410747254519
Merged-chr15-95828209-4	chr15	95827716	95828716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1856.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.19087920298557	6.75669600420154	6.49109165991362	7.15220874641217	7.01498737206815	6.69705510027062	0.180186768442322	0.557500905227713	0.864250916545731
Merged-chr7-99963025-4	chr7	99962548	99963548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17410.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	6.89137525755847	6.53813673888709	6.6855786685459	6.35967030897717	6.63725360724403	6.90514617871333	-0.106013135756439	0.715863124451866	0.92647595514209
Merged-chr4-58506958-4	chr4	58506460	58507460	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-7557.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.23073387779267	5.16639405015968	5.36825881039999	5.55896516145213	5.47243903662976	5.51869184100178	0.520367070703638	0.120768580868334	0.464840044263684
Merged-chr11-120491312-2	chr11	120490812	120491812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-525.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	3.72677443924435	3.33968758207632	3.43770848847834	3.37302980712755	3.50266323095662	3.6170252380635	-0.0615292838518342	0.918460480200025	0.981774101853545
Merged-chr5-96921221-4	chr5	96920729	96921729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131152)	promoter-TSS (NR_131152)	-43.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	7.79770580306993	7.8502255108749	7.78410633828398	7.67222792186245	8.07399318915152	7.69062677225315	0.0326829621644864	0.890551200625628	0.974538504960181
Merged-chr8-33664650-3	chr8	33664142	33665142	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	RLTR6_Mm|LTR|ERV1	11404.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.28188623378464	3.28322594220166	3.49478264608167	4.89224278706951	4.50619293452399	4.86614345120817	5.78428580610073	4.57336192604864e-10	5.29263281144166e-08
Merged-chr7-3291813-2	chr7	3291315	3292315	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093765, intron 1 of 2)	intron (NM_001093765, intron 1 of 2)	-1213.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	3.03176171906314	2.91018726976939	3.38431239360276	3.34893448385001	3.40706042361743	4.05734057361506	2.0259529955104	0.0047153525456567	0.05880884273956
Merged-chr16-13902348-4	chr16	13901880	13902880	+	950.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289562)	promoter-TSS (NM_001289562)	765.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	7.18515428895902	7.23781122191434	6.81144508687317	7.18946937254667	7.19525509750733	7.0999285980355	0.0928172686521291	0.715585064003604	0.926402055104375
Merged-chr5-124075073-4	chr5	124074574	124075574	+	987.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20724.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	5.11619289469485	4.49666266241612	4.49408795942772	4.30944880663336	4.38334542755902	4.23255580524168	-1.0613029122247	0.0268793298593528	0.195248824001486
Merged-chr19-47442502-2	chr19	47442002	47443002	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	MIRb|SINE|MIR	21909.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.43413751751402	3.26734607464882	3.23809023182273	3.59457927643552	3.40944776249126	3.42857231000316	0.612841826412786	0.309856134366027	0.705462734304293
Merged-chr14-77794659-4	chr14	77794173	77795173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033440, exon 3 of 3)	3' UTR (NM_001033440, exon 3 of 3)	4295.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	6.46530081416693	6.75848227451726	6.79493905228303	6.89021570751079	7.15616275635005	7.17043196008606	0.619632630967629	0.0194216029459197	0.158339201660404
Merged-chr14-44986490-4	chr14	44986018	44987018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1593.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	6.12458413730739	6.03597347887904	5.99320501690597	5.90483155525118	5.94550440185094	5.78178113247955	-0.2955141361231	0.315119463984987	0.70945648744508
Merged-chr11-48924016-3	chr11	48923506	48924506	+	695.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 1 of 2)	intron (NM_001045540, intron 1 of 2)	3176.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	4.41359970977859	4.28790214766446	4.50519443746636	4.37133373681006	4.40184899875605	4.40455916672193	-0.0166106674834681	0.969746662243641	0.993210926740941
Merged-chr10-83343373-4	chr10	83342865	83343865	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5548.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	3.17029404767922	3.11987145129797	3.22551198505229	3.32964348759885	3.3501595205834	3.17998243986274	0.512968736091723	0.411337086821391	0.783877099438722
Merged-chr8-39006300-4	chr8	39005803	39006803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357305, intron 1 of 8)	CpG	458.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	5.62230160383028	5.83214267919412	5.84644883698324	5.581592119898	5.63531150834143	5.41520201347072	-0.390426106358133	0.227192131332888	0.622340099550531
Merged-chr16-31235626-4	chr16	31235120	31236120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34382.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	7.04300212226773	6.79227865575082	6.5332054406125	7.29553330372677	7.34895811800705	6.92763129978364	0.600312240947086	0.0332900401360214	0.222597047544043
Merged-chr13-56334480-4	chr13	56333972	56334972	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-28428.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	6.70440351050016	6.85660641848163	6.93320097902863	6.24601604270052	6.36554864999688	6.41015185203092	-0.782945639221928	0.00303385512497887	0.0424685605406993
Merged-chr2-30439771-2	chr2	30439271	30440271	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	23721.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	3.88596524364969	3.74452660050316	3.77189728948934	3.49533696474773	3.63675699216728	3.8410778045431	-0.480105653364404	0.381543213929619	0.763196493693345
Merged-chr7-126097708-4	chr7	126097201	126098201	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15290.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	4.14562250036535	3.5495256370673	3.49723657661935	3.47042501894307	3.23968570986896	3.57063306605568	-1.20210811338257	0.0595435832770561	0.315854256248057
Merged-chr2-45111273-4	chr2	45110758	45111758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289521)	promoter-TSS (NM_001289521)	120.0	NR_110572	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	7.91180276882426	7.83268891673906	7.60052576782144	7.97301051883844	8.07326921699333	7.74188379656729	0.212545985544221	0.364584989915958	0.749935425712623
Merged-chr3-58525905-4	chr3	58525417	58526417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030685)	promoter-TSS (NM_030685)	-33.0	NM_030685	28146.0	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	7.71493895492316	8.10460764417263	7.83831271180774	7.86567525220322	8.06181804062762	7.99581064775264	0.111639132193571	0.632421278099462	0.895534618336993
Merged-chr18-35772137-4	chr18	35771633	35772633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019912, intron 1 of 6)	CpG	574.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	8.13173618824186	8.18964384569019	8.06926162766174	8.34627396399723	8.31513352404598	8.33385834598861	0.277901457640225	0.170072521780425	0.547336855242915
Merged-chr11-75535230-4	chr11	75534786	75535786	+	662.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	3174.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	6.11375728693687	6.27049396461349	6.30203296934874	6.48740949577125	6.70374180628061	6.10400045972328	0.396577570616385	0.191303057860149	0.577883022436918
Merged-chr8-83695512-4	chr8	83695035	83696035	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	-1474.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.5350260458642	5.35434463359072	5.94960503323151	5.8717191877413	5.64781031541777	5.75277551109437	0.248976459129862	0.473662686657975	0.821008745577268
Merged-chr2-31881032-3	chr2	31880476	31881476	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6305.0	NM_011836	23928.0	Mm.69566	NM_011836	ENSMUSG00000026840	Lamc3	1110064A23Rik|AI562206|AW240805	laminin gamma 3	protein-coding	2.91697392649758	2.92790368157023	3.10413565067722	2.80174831501228	2.69411533289729	3.17512665414427	-0.393843151935398	0.590969651414547	0.877301111216348
Merged-chr13-20128583-2	chr13	20128083	20129083	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	38076.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.27292060449391	5.61245275358129	5.66436535830132	5.60027833012964	5.48400405591674	5.84769357903187	0.22490992633916	0.516082872760053	0.844051513295388
Merged-chr15-99703015-2	chr15	99702515	99703515	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 1 of 12)	intron (NM_031842, intron 1 of 12)	728.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	3.8632535638064	3.59616779390594	3.84501940807397	3.82581285266126	3.52052049313757	3.91385328036163	-0.0494451447853561	0.929474564044395	0.984153712858764
Merged-chr3-100162450-4	chr3	100161952	100162952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	-11.0	NM_010269	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	7.15240996801906	7.46656645065364	7.30718728169678	7.35643078430568	7.27341664492892	7.20057483299635	-0.0542322045308587	0.821892320480645	0.958023303204974
Merged-chr7-43671206-4	chr7	43670692	43671692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-839.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	8.25759531265346	7.91693089827768	8.25635190343168	8.34530467861065	8.63983751502854	8.38989232001275	0.44422054519266	0.0549111640177389	0.301071039774871
Merged-chr17-8199246-4	chr17	8198736	8199736	+	943.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33718.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	4.07561419064872	3.73626766183482	3.78802521325661	3.54703121978035	3.42159571452404	3.53438737868922	-1.3171387260426	0.0204805035835457	0.163966422762936
Merged-chr2-90904711-4	chr2	90904156	90905156	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311116)	promoter-TSS (NM_001311116)	65.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	7.17564728331347	7.51052929480102	7.37973570759385	7.19665610940326	7.47063886878572	7.17141335456933	-0.102235351593303	0.685161055853293	0.916175954737346
Merged-chr15-102378029-2	chr15	102377529	102378529	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	3.58727510340925	3.53849259967014	3.78239224958223	3.26955505525856	2.97646603523547	3.39369959127057	-1.68515956629013	0.0101555486281527	0.101486228659616
Merged-chr12-4150605-1	chr12	4150105	4151105	+	545.0	f1_balb.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	16452.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.86687706897378	5.07869397445369	5.39846019627185	4.7955620298185	4.81419315709597	4.93469724644799	-0.597842795451923	0.13379699683548	0.489082305174478
Merged-chr6-135195073-2	chr6	135194569	135195569	+	696.666626	f0_c57.idr|f1_c57bl6.idr	TTS (NR_040296)	TTS (NR_040296)	-2918.0	NM_001362110	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	2.8124338164922	3.00532700918057	2.87667353466624	3.78041640585139	3.26372587900675	3.5593058327696	2.89240259558733	0.00014964141201627	0.00396666537465747
Merged-chr17-70839892-2	chr17	70839392	70840392	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6885.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.54415770811384	2.43872356921381	2.43735161037394	2.74858347369972	2.54740293440516	2.82920521503214	1.34862184000813	0.09167818034252	1
Merged-chr1-90998538-4	chr1	90998059	90999059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111312)	promoter-TSS (NM_001111312)	-168.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.73986211618164	6.51560686823643	6.48405253577908	6.6530187724581	6.42378759883721	6.17824224314626	-0.238570766771209	0.407241881222679	0.781408565727585
Merged-chr10-117147681-4	chr10	117147167	117148167	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	807.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	6.11861837382866	5.85145285333864	6.22601603175314	6.47340372174039	6.49861818841184	6.59284351606244	0.75425542036955	0.00819345254007207	0.0875399074158085
Merged-chr7-101838353-2	chr7	101837853	101838853	+	924.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-127.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	5.80195256715102	5.85276459275432	6.08892688955762	5.95447286327615	5.87555654179431	6.06445797111621	0.0876061736237409	0.772296125663948	0.943716660313239
Merged-chr5-99278454-1	chr5	99277954	99278954	+	726.0	f0_balb.idr	Intergenic	Intergenic	-25527.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.5350477593207	3.83459483404707	3.35282620103556	3.41433806972157	3.0282815826047	3.17919569467928	-1.48923542686619	0.0262542026397994	0.192405882144922
Merged-chr14-55734855-2	chr14	55734355	55735355	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10829.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	7.57029617844987	7.30442599642727	7.36547241955261	7.26451062248581	7.43744302459355	7.26390224081129	-0.134622398018241	0.572290363736928	0.869807909725036
Merged-chr3-19214777-4	chr3	19214299	19215299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26504.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	5.30433988095841	5.5965061707605	5.25731652615459	5.48537916122847	5.34177166889412	5.50540898811552	0.0708674608559557	0.838276591725121	0.962493207106836
Merged-chr19-12007844-4	chr19	12007337	12008337	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	28903.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.21828493411626	5.27720241139501	5.19165635977065	5.24029819418217	5.22724375431017	5.25567822724329	0.0156064849184774	0.963918896791388	0.991222546396483
Merged-chr15-97379521-2	chr15	97379021	97380021	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132234.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	6.79114617005191	6.5693296097939	6.58324114696312	6.93672316532775	7.33562636655203	6.79299027583789	0.618328331093955	0.0282877152371046	0.201314078810212
Merged-chr17-26916969-4	chr17	26916481	26917481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053173)	promoter-TSS (NM_053173)	-110.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	5.18279737536313	5.17773952784311	5.18350681035742	5.06315923926322	4.74266440248721	5.27797976997613	-0.315252641825874	0.413994237661416	0.785508920308339
Merged-chr4-43558077-2	chr4	43557577	43558577	+	633.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	4506.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	4.43386997383919	4.52751728480602	4.88866592001443	4.52681634803154	4.75227986726086	4.81342171099886	0.195579453656264	0.651555388182285	0.902860989743513
Merged-chr15-99116563-4	chr15	99116054	99117054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10291.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	6.1585022522727	6.12857583784083	6.16071283091639	5.82445337690334	5.87739136049121	5.63482314533063	-0.619384725396591	0.037484175439728	0.23927758112688
Merged-chr1-93809264-1	chr1	93808764	93809764	+	552.0	f1_balb.idr	intron (NM_025454, intron 2 of 7)	intron (NM_025454, intron 2 of 7)	5299.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	2.3589333455964	2.41854737673669	2.56826168287504	2.28031693796255	2.0360119956643	2.52008433306668	-1.01962050156467	0.287811533813466	1
Merged-chr6-129098040-4	chr6	129097549	129098549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	2854.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	5.42790658116497	5.95806198714185	5.6434127499764	5.53320340529228	5.73711453015174	5.24548175645193	-0.314205509234189	0.395247788940162	0.772593920835675
Merged-chr1-36589684-2	chr1	36589184	36590184	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	3648.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	3.999444192828	4.01465758077717	3.86932436912791	4.19867010693713	4.16700036617661	4.23239029227876	0.661145599514636	0.17005402491204	0.547319665218002
Merged-chr11-107547795-6	chr11	107547336	107548336	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198298)	promoter-TSS (NM_198298)	-124.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	5.10536691960486	4.8210662258745	4.96263707568717	5.23039255068413	4.93098608506174	4.66836518750325	0.00528613156029771	0.989687007982188	0.997611022725407
Merged-chr13-92485735-2	chr13	92485235	92486235	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	2.73593387869668	2.56145071358453	2.70572526727759	2.78968978857949	2.72130693405103	2.95891275088377	0.812328635254596	0.273838368243628	0.671279304608923
Merged-chr6-125046861-4	chr6	125046358	125047358	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 2 of 7)	intron (NM_133345, intron 2 of 7)	2995.0	NR_130997	78202.0	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	Gm43989	RIKEN cDNA 4930557K07 gene	ncRNA	2.61402910745672	2.6152215729879	2.9638185949377	2.85236421411768	2.83801275658594	2.7368747397362	0.400332148005481	0.594107976697525	0.87882660002802
Merged-chr2-91649543-2	chr2	91649043	91650043	+	862.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027371)	promoter-TSS (NR_027371)	248.0	NM_001347175	381410.0	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	6.69285704266786	6.94442676270356	6.89618947447003	7.06036906099726	6.96079964305924	6.6753091733795	0.105953151730842	0.688633181214535	0.9172299553909
Merged-chr7-101563207-3	chr7	101562711	101563711	+	759.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-2346.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	3.98370754948556	3.77298231120588	4.23976133884649	5.40406231899993	5.28180281769003	5.27599854932822	3.42330957307114	8.22133423901516e-13	1.58719438366583e-10
Merged-chr11-118483049-2	chr11	118482549	118483549	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6217.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.39629310117909	5.2933686143743	5.56575829248588	5.20198030733432	5.03406002594757	4.96878254204871	-0.691087182208756	0.0544956954010442	0.299780366450488
Merged-chr14-66297518-2	chr14	66297018	66298018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038077)	promoter-TSS (NR_038077)	-389.0	NR_038077	69303.0	Mm.352258	NR_038077	ENSMUSG00000085984	1700001G11Rik	-	RIKEN cDNA 1700001G11 gene	ncRNA	5.77015181975285	5.58590231563192	5.66740246593688	5.90414175517024	5.40028583342796	5.50336038975885	-0.103138560399909	0.76451799401223	0.941979298344481
Merged-chr14-120276504-4	chr14	120276011	120277011	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	842.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.01585012459393	8.54636874219723	7.92665018629922	8.34512529533392	8.7369242732592	8.15652932135852	0.33774331215975	0.230690803290612	0.626398744902006
Merged-chr2-76647289-2	chr2	76646789	76647789	+	735.466675	f1_balb.idr|f1_c57bl6.idr	exon (NM_011871, exon 2 of 8)	exon (NM_011871, exon 2 of 8)	705.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	4.38178829906064	4.53186250107451	4.6897563367651	4.37227873310542	4.19393529758798	4.52484107583879	-0.443574778856522	0.323412921407738	0.71668986599242
Merged-chr12-41300481-3	chr12	41299977	41300977	+	941.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	185580.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.95519136842784	3.24533265894902	3.22803326073784	2.87760811066186	2.91063780952229	2.9525344940292	-1.0944468659606	0.113546335237877	0.450185614169275
Merged-chr10-5191261-2	chr10	5190761	5191761	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	3446.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	4.93507440969764	5.42198508194993	4.88647963488404	4.94249756694329	5.00795670361149	4.87483477566497	-0.360434555495926	0.372507804833707	0.756359917633068
Merged-chr6-129400094-4	chr6	129399594	129400594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019985, exon 2 of 6)	exon (NM_019985, exon 2 of 6)	2797.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	8.26833409937159	8.44629280002841	8.07749164391659	8.24751188225407	8.53910910277398	8.08939662891686	0.0496301954701542	0.837098650184478	0.962035641067236
Merged-chr2-11589595-4	chr2	11589108	11590108	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 7 of 11)	intron (NM_152824, intron 7 of 11)	13591.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	7.018274400652	6.95434448468767	7.1920606554523	7.0747571616007	7.20371376513489	7.11616072782123	0.125760124575965	0.602206524349633	0.88225227970428
Merged-chr3-16021313-3	chr3	16020812	16021812	+	873.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-14980.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.17303403671925	3.00680525008927	3.04427021896188	3.01004061788584	2.94868473061898	3.28366102420874	0.016732005144023	0.98018057105394	0.995483481682754
Merged-chr8-35377174-1	chr8	35376674	35377674	+	758.5	f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	1433.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	7.14895212905727	7.15024098351647	7.09626331604575	7.12532610555017	7.15599969683167	7.08967474450694	-0.0117134374578045	0.959764263477212	0.990242512723989
Merged-chr11-118223837-2	chr11	118223337	118224337	+	751.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-11095.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.52549595411296	4.35047264117936	5.11741519769716	4.67565179394879	4.32652063907418	5.03024684408748	0.00695632949054969	0.988984107592872	0.997495571099757
Merged-chr8-56304273-3	chr8	56303752	56304752	+	684.8222049999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	L1_Rod|LINE|L1	9700.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.34127230796004	5.73672229875354	5.80409182856312	5.50905801956845	5.72187688738022	5.86509801407271	0.120501890787159	0.726518898522846	0.929876244147744
Merged-chr7-143038738-4	chr7	143038237	143039237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14013.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	7.1278139839737	6.79780440023805	7.11419883839454	7.09564425856552	7.28358770618564	7.23186174289205	0.285860360067787	0.25715769686137	0.654457620898992
Merged-chr6-136938866-4	chr6	136938371	136939371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	656.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	6.33600898622083	6.28049408319226	6.51187083801666	6.96227596418231	7.13993844813671	6.70763456734181	0.926598879897164	0.000677850244871854	0.0133592049207241
Merged-chr15-96640282-2	chr15	96639782	96640782	+	821.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1680.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.64270300293423	5.2430807782444	4.96976299644503	5.38805138054	5.47338533032209	5.03731680321391	-0.00846799415323184	0.983203568337513	0.996242007327823
Merged-chr1-194993597-4	chr1	194992973	194993973	+	744.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16514.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	6.1162099377965	6.38974652844038	6.38713487895993	6.69695150892075	6.64734597984483	6.40893415682098	0.480516782036784	0.0857475524634413	0.387862549472479
Merged-chr6-47175810-4	chr6	47175307	47176307	+	845.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68589.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	5.45282011678871	5.10937334293762	5.24272109891365	4.68544322956668	4.54127133934899	4.60977554351725	-1.47590497714677	0.000185229867545415	0.00470183246452682
Merged-chr3-27153932-4	chr3	27153425	27154425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177626)	promoter-TSS (NM_001177626)	-47.0	NM_001177626	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	5.40973682763136	5.65374396373134	5.01174887017519	5.39086198367064	5.49329143934099	4.82721280024707	-0.222949498161055	0.598492667182214	0.880808927175713
Merged-chr17-35193182-4	chr17	35192686	35193686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	6.75875498126715	6.54919685708163	6.55794581396913	6.12650738272241	6.19913948398728	6.15412357532238	-0.762933852169466	0.00507561558837218	0.061795636246754
Merged-chr5-122345228-2	chr5	122344728	122345728	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 4 of 10)	B1_Mur1|SINE|Alu	8967.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	2.80825067360772	2.80063438073705	3.03581626421173	2.93329388547925	2.97901528592622	2.9918007752239	0.427687396702802	0.536214502659783	0.85392789486322
Merged-chr5-20940490-2	chr5	20939990	20940990	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-10499.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.79979875800354	4.94990949574631	4.75196205682932	4.81813281812188	4.88086246526406	4.51926385758779	-0.182174804359798	0.65634546113569	0.904644460166826
Merged-chr17-17872407-2	chr17	17871894	17872894	+	707.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11545.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	6.22739697534875	6.01674486919036	6.28505008308364	6.34366009222467	6.38758129520339	6.76007701164031	0.536574400818759	0.0686959537741645	0.342942254787785
Merged-chr17-31563694-2	chr17	31563194	31564194	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1079.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	6.39904013852588	6.87292110657287	6.77093310141651	6.68014261010785	6.78031169400129	6.8872681224985	0.135362840936031	0.626720694747806	0.892916235446326
Merged-chr11-83593647-4	chr11	83593147	83594147	+	903.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	-560.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.99696422511047	6.86399024520903	6.77011840051322	6.76648833107193	6.79705345261166	6.65007212305913	-0.219038190775176	0.385727554975538	0.76666449726431
Merged-chr11-76497143-2	chr11	76496643	76497643	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-2648.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.29881615952118	5.48814269142964	5.5582628816217	5.40954819483636	5.15649657259822	5.3316393669493	-0.29573905439553	0.394015497549426	0.772046311610617
Merged-chr4-123917979-4	chr4	123917457	123918457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	CpG	524.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	8.59398518336188	8.83857015097375	8.50628122367442	8.43148516730335	8.44494173486467	8.37458765841629	-0.332334639386165	0.11786729091619	0.458487286361289
Merged-chr2-59121236-4	chr2	59120745	59121745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	39438.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	5.77616157461852	5.86233029149493	5.30166754297732	5.69054678299151	5.64073793190868	5.49757185801506	-0.12534589434703	0.7184538347427	0.927364481477278
Merged-chr14-66260784-2	chr14	66260284	66261284	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	20268.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.36962936461244	3.23149846938219	3.34309134608715	3.31200922369646	3.28263431290107	3.30154529792163	-0.0662630379527826	0.912835137710589	0.980471757869349
Merged-chr5-101842715-2	chr5	101842215	101843215	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	intron (NM_172882, intron 66 of 66)	77585.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.30255998026329	2.29527744759689	2.4719523646233	2.07143132009423	1.94183118926212	2.42302151495391	-1.40282876020343	0.168648743935627	1
Merged-chr11-98962915-2	chr11	98962415	98963415	+	855.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1957.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.89730204473782	3.33419794068625	3.8565574252392	4.23971337525882	3.78613361763443	3.53993730979444	0.523861720148248	0.412816867671755	0.78466442572758
Merged-chr15-97942742-4	chr15	97942266	97943266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21463.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	5.54913211574482	5.73060420001947	6.11563841390088	6.13104446246757	5.93741169789483	5.98241067483862	0.374153953482574	0.252850017613217	0.650244514834543
Merged-chr2-132264138-4	chr2	132263665	132264665	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	1017.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	6.44159436073721	6.66367383057264	6.50672269875151	6.65083103039572	6.83192251399195	6.49318466574252	0.211142515805149	0.437069906486616	0.799765712162923
Merged-chr5-137788488-2	chr5	137787988	137788988	+	738.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005426, intron 1 of 16)	CpG	686.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	3.2141545328588	3.02521779072556	3.11974222240504	2.97140697124582	2.8857150750729	2.95312325397121	-0.871718069661289	0.1967674028266	0.584746042932789
Merged-chr2-140783578-3	chr2	140783083	140784083	+	949.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-112107.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.10283867378052	3.16132220379963	3.21024309903234	3.14375787198244	2.99310583767823	3.22534956197963	-0.169546509097078	0.792782216190064	0.950051439909475
Merged-chr12-32692528-2	chr12	32692028	32693028	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127807.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.62550973682787	3.69935100982291	3.69761165331847	3.6259627734943	3.3600602986474	3.76701946397059	-0.308022871565748	0.590426021154037	0.877218317361274
Merged-chr5-66091547-2	chr5	66091047	66092047	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	6632.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.85538506794818	4.68602705321101	4.81559190924173	5.13767702674879	4.94600240689924	5.31348762524638	0.749721943755204	0.0535994940651294	0.296847073212774
Merged-chr8-83333273-1	chr8	83332773	83333773	+	605.5	f0_balb.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-787.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	3.76803252967399	4.18845326816629	4.32982246829167	3.85443313311919	3.85897962553302	4.09829789680556	-0.514632869891544	0.334173825491558	0.724803152263249
Merged-chr17-84191069-4	chr17	84190529	84191529	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183021, exon 38 of 38)	3' UTR (NM_183021, exon 38 of 38)	-3082.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.51194818613949	3.32260757657365	3.46494849699846	3.15355878123924	3.12547634071464	3.37402826872887	-0.888870509778381	0.154061483030309	0.523209170237377
Merged-chr4-116202953-4	chr4	116202458	116203458	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-18458.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	5.22556861929851	5.34285348422233	5.33132372284201	5.46542782978394	5.64847300409264	5.23121650913621	0.339422555863172	0.331907275340855	0.723269970840191
Merged-chr5-123713087-2	chr5	123712607	123713607	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 5 of 13)	B3A|SINE|B2	7937.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	4.22965922334454	4.12618746323026	4.05929920257666	4.16990794008284	4.00879771602629	4.17578961166751	-0.0836835020989743	0.860599931868081	0.967588655430938
Merged-chr18-80196354-4	chr18	80195850	80196850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 3 of 5)	Charlie1a|DNA|hAT-Charlie	4269.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	7.19961378401832	7.17206134108004	7.52081226885352	7.28065159038641	7.45190667072676	7.35529521511013	0.100848449999114	0.680369568020596	0.914217125833247
Merged-chr2-157737347-4	chr2	157736825	157737825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025680)	promoter-TSS (NM_025680)	-76.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	5.02685660467106	5.34336563738589	5.0091391175524	5.26748377859141	5.03717961107097	4.88352962282397	-0.137830632272508	0.721397427616392	0.928468816889347
Merged-chr3-87359488-4	chr3	87358988	87359988	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1607.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	7.68938950709477	7.80888248872123	7.2978877870893	8.41294012424179	8.57611139297773	7.74438737005348	0.958721656769533	0.00127420468724839	0.0217619096093111
Merged-chr7-126770987-4	chr7	126770493	126771493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024228, exon 8 of 10)	exon (NM_024228, exon 8 of 10)	4579.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	5.94100828113632	5.74943278175654	6.11557332025398	4.4958580543791	4.72482611051508	5.41238116961189	-2.00058798531228	4.50753304952676e-06	0.000202408424168927
Merged-chr10-93309354-1	chr10	93308854	93309854	+	637.0	f0_balb.idr	intron (NM_001322265, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	1805.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.96682597271544	3.8052326266187	3.9321847226598	3.42129464752567	3.35756875350595	3.29713399580742	-1.9699421281128	0.000944843711817284	0.017222027507753
Merged-chr6-148530467-1	chr6	148529967	148530967	+	591.0	f1_balb.idr	Intergenic	Intergenic	83842.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	2.73407701439509	2.85325804296136	2.99626276205148	2.65413278943202	3.0084703707453	3.01071912100698	0.194494267048144	0.792699199446782	0.950032655975256
Merged-chr12-112644761-4	chr12	112644278	112645278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161737)	promoter-TSS (NM_001161737)	-50.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	6.58335249415495	6.39335307857079	6.42319026127122	6.37852359332379	6.30377150661192	6.2891125592837	-0.239579288652385	0.374459005720353	0.758087520776938
Merged-chr4-8645335-2	chr4	8644835	8645835	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-45071.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.91896130341295	2.65600061694194	2.94967612164111	2.89267733861939	2.72747810645372	2.77983785101783	-0.223529154037966	0.760024540433086	0.940572672765463
Merged-chr1-9799143-4	chr1	9798661	9799661	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	1031.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	6.21030843027621	6.47344395390206	6.08825050751025	6.65755150396872	6.6988429880115	6.48122836389208	0.555728190825042	0.0503426162715893	0.285484114681824
Merged-chr18-9828162-3	chr18	9827658	9828658	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	120510.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.58210125217041	4.3982757031833	4.8919504340124	3.61277760910452	3.53696201858797	3.86293538944603	-3.00720038432605	1.19475045930111e-07	8.38926550358874e-06
Merged-chr11-80169347-3	chr11	80168851	80169851	+	867.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-14521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.7969593757528	7.44066008596111	7.59458885914571	7.67790747554992	7.79250852777566	7.50243683303279	0.0710035641788738	0.768295087513382	0.942864224975033
Merged-chr8-22883063-3	chr8	22882573	22883573	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	23534.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.09421438169365	4.24750221105144	4.1315688749082	4.43511632774238	4.19490654442992	4.29365787971035	0.401096816131799	0.38833685178787	0.768214408180843
Merged-chr1-152554334-4	chr1	152553829	152554829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 6 of 18)	exon (NM_001346119, exon 6 of 18)	70888.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.0338929987817	7.93619757778175	7.69122520438354	7.75857230684771	7.90736456420069	7.73842965414509	-0.134718708109068	0.555696626207419	0.86332697341212
Merged-chr3-106568701-1	chr3	106568201	106569201	+	708.0	f0_balb.idr	intron (NM_001025582, intron 5 of 6)	Lx7|LINE|L1	-20899.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	3.59872121475797	3.9340022181123	3.77068846382028	3.8159611768049	3.72200728000287	3.93917250969038	0.145344097637525	0.787816277983259	0.94877064431094
Merged-chr2-127334615-2	chr2	127334115	127335115	+	875.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	4.68944596853844	4.69324278154462	4.42895428693648	4.59976833355578	4.84801931132483	4.8272296350041	0.339635762384206	0.416355361226441	0.787276375342114
Merged-chr2-32509467-4	chr2	32508975	32509975	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25884.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	4.51220533819154	4.16484650443801	4.24246211766982	4.36980101828852	4.24230862239305	4.01229471278133	-0.257639223686433	0.594619723902926	0.879171206470043
Merged-chr2-127084825-2	chr2	127084325	127085325	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 3 of 7)	intron (NM_026678, intron 3 of 7)	14168.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	4.58176105423085	4.74620582235911	5.3282696072413	4.72807121885293	4.76848042854122	4.71136160497911	-0.395206677441463	0.374738916854567	0.758118627242714
Merged-chr11-69074749-2	chr11	69074249	69075249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	1323.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	3.81680643485464	3.99825165584368	4.20614340960413	3.8896568570564	3.92021618685726	3.90538762094987	-0.311500708150799	0.543105043234553	0.857486639982385
Merged-chr5-36623428-2	chr5	36622928	36623928	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081232, intron 3 of 8)	intron (NM_001081232, intron 3 of 8)	-37202.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.90978374395815	3.7031707672799	3.69966167331182	3.63926231113655	3.48391339204324	3.76975407867782	-0.507129547515895	0.359961218114546	0.746219593510366
Merged-chr2-122143968-4	chr2	122143458	122144458	+	754.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	MTD|LTR|ERVL-MaLR	-3729.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	3.99757936415725	3.55191968190777	3.58628708796148	3.86510426235057	3.80099269244192	3.82139063977183	0.300974019465126	0.592048441116078	0.877880937493524
Merged-chr4-119177928-3	chr4	119177415	119178415	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013848, exon 13 of 13)	3' UTR (NM_013848, exon 13 of 13)	-3720.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	3.74248739703818	3.56385534518018	3.91016071766018	5.22687753955138	5.25360287511004	4.94222820837281	4.16615636658759	1.44668365850296e-13	3.23590467356759e-11
Merged-chr6-42693068-4	chr6	42692570	42693570	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029930)	promoter-TSS (NM_029930)	30.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	4.81688285124658	4.78030014433565	4.80783061526822	3.88905261609726	4.54452102558178	3.974265755447	-1.53650126765504	0.00468784029710732	0.0585596480170703
Merged-chr9-118653636-2	chr9	118653136	118654136	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	46927.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.23679597595416	5.27558064766809	5.5377441953491	5.31124330214053	5.27363136198953	5.37370588672537	-0.0591283573157629	0.864522822768108	0.968291113794295
Merged-chr11-6586833-4	chr11	6586330	6587330	+	882.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146014, intron 4 of 9)	ORR1G|LTR|ERVL-MaLR	19224.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	3.43661949696958	3.41653052151542	3.43645557300332	3.16958170417279	2.9222660232919	3.34459223413054	-1.18136746739906	0.0731465404798596	0.355450408237351
Merged-chr1-172513564-4	chr1	172513071	172514071	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7559.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	7.1189203409629	6.7611912342846	6.40716175212649	7.78918768143711	8.17688301982561	7.70324286018417	1.62561706019212	7.1183071504745e-08	5.24623650466503e-06
Merged-chr16-33077269-4	chr16	33076776	33077776	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	14755.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	6.15755473009779	6.27862030277652	6.2064854351829	5.87079945482535	6.24494689824959	5.90443929900098	-0.312733100697906	0.300897656631111	0.697653874358754
Merged-chr16-10416239-4	chr16	10415708	10416708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	4270.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	4.58663768260995	4.67270403971705	4.81263118827266	4.63945391563796	4.52291496240034	4.97975650148953	0.0635495140857118	0.88091100979726	0.97262624933271
Merged-chr1-173978970-3	chr1	173978469	173979469	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 1 of 6)	Lx3_Mus|LINE|L1	3875.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	6.16589379397358	5.90298770539598	5.88010376314789	4.05778704401778	3.99257117743751	4.63603690504332	-4.23366017652167	4.95920551466098e-18	2.42732689684653e-15
Merged-chr10-5806030-4	chr10	5805505	5806505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-540.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	6.07488857075384	6.18721534557536	6.55381538257957	6.06138993573733	6.3697850070805	6.12915171995778	-0.127203943536734	0.680385463625818	0.914217125833247
Merged-chr9-66832630-4	chr9	66832119	66833119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	2087.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	8.00297455732991	8.0504024808435	7.84242094176649	7.84709636827713	8.01858779808191	7.74371931249556	-0.13007162138053	0.560698486086922	0.865261302076164
Merged-chr17-47600664-2	chr17	47600164	47601164	+	823.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081636)	TTS (NM_001081636)	7197.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.55677741991128	4.52766919528808	4.88351575304768	4.85231453446711	4.83215549743776	4.91293357846482	0.486724127136624	0.23046918516452	0.626306540356293
Merged-chr12-3699034-3	chr12	3698557	3699557	+	791.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	ORR1D1|LTR|ERVL-MaLR	-107923.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.79529924771162	4.99640050461123	5.28879149765403	5.47563439530852	5.31344221498313	5.2268070855101	0.647273842709035	0.0857650291554976	0.387862549472479
Merged-chr15-100669565-4	chr15	100669076	100670076	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001270537)	promoter-TSS (NM_001270537)	-76.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.65196074799496	5.2899350343416	5.54963851907674	5.59350381545946	5.72688992005715	5.58414318151102	0.258584157151868	0.439421800275433	0.801126452029189
Merged-chr9-65038908-3	chr9	65038429	65039429	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 3 of 20)	intron (NM_028906, intron 3 of 20)	6471.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	3.66713629322898	3.73528386815173	3.8555217401181	3.6423733715546	3.50007795204794	3.51214679679481	-0.691715176241945	0.212309425336355	0.604754238851012
Merged-chr14-13579142-7	chr14	13578684	13579684	+	878.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 3 of 4)	intron (NM_001163032, intron 3 of 4)	-91692.0	NM_177624	218739.0	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	4.34771480007705	4.81401160938977	4.98552999616458	4.06984336813681	4.33721232982374	4.74948872571458	-0.797864655238703	0.113931882940303	0.450859089500984
Merged-chr14-66234849-2	chr14	66234349	66235349	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	MIRb|SINE|MIR	-21025.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.59328201412617	5.31106746288068	5.48847083067043	5.79649089260171	6.11970142407665	5.39432288522911	0.647177474897524	0.0758522989327707	0.362556018168626
Merged-chr5-90892167-2	chr5	90891667	90892667	+	972.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008176, intron 3 of 3)	intron (NM_008176, intron 3 of 3)	922.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.60998446451414	3.33572031400722	3.47549536390343	3.06823250354571	3.14137406332998	3.01840517961177	-1.66963706491849	0.0121294442186276	0.11510798295433
Merged-chr19-56546186-2	chr19	56545686	56546686	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 2 of 9)	intron (NR_153440, intron 2 of 9)	1936.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	3.48945910283604	3.49726632741243	3.54971447629034	3.52183511238964	3.08835396507948	3.45939415859069	-0.555034465126462	0.374243868596197	0.757958802250284
Merged-chr11-87433132-4	chr11	87432635	87433635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	5544.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.22559585896668	6.12172399798387	6.49330299331317	6.40908407665646	6.54513442727115	6.3330492507324	0.26294797622606	0.35566955993492	0.742489966989298
Merged-chr7-80092633-4	chr7	80092134	80093134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-17377.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.11300835007873	5.15170597805539	5.48692321356431	5.15492563027503	5.08101025572924	5.43989344362189	-0.0540964951002902	0.884661884272064	0.973538624783452
Merged-chr2-119618590-4	chr2	119618088	119619088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042653)	promoter-TSS (NM_001042653)	-83.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	6.05681742466896	5.94613437348791	5.56229023265433	6.04326273030844	5.88646707076534	6.19357265418825	0.268156528260743	0.408422554704977	0.782032951304577
Merged-chr19-6871803-4	chr19	6871302	6872302	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13591.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	7.43447186054917	7.25348866662106	7.74099936497178	8.11592841980917	8.30978857673804	7.83965768439817	0.895197192116454	0.000536051988746597	0.0110844467891717
Merged-chr10-14017904-4	chr10	14017394	14018394	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	51515.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.35358678958379	3.03973104040189	3.16498296711692	3.05859226632838	2.95330659498976	2.93312470185887	-0.947293423903325	0.16350041032126	0.537474010035216
Merged-chr1-74304076-4	chr1	74303579	74304579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	CpG	257.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	8.10399048520646	8.30617238752933	7.78006625215818	8.13944439319256	8.00229603910287	7.73677707587473	-0.161204987884542	0.524575900923957	0.848738266393417
Merged-chr5-135779141-2	chr5	135778641	135779641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289554)	promoter-TSS (NM_001289554)	492.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	6.85265697851786	6.90660580966407	6.88884929263177	6.93047201905821	6.95866848435453	6.79843365252781	0.0313639141033039	0.897718986904079	0.976134735553722
Merged-chr5-21213978-4	chr5	21213480	21214480	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	27713.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.70852109769118	4.65208451113644	4.39669663299389	4.22611383287431	4.21705121101257	4.32879941842093	-0.894793806626961	0.0441886484516861	0.264559581261181
Merged-chr17-69199929-6	chr17	69199429	69200429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	40573.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	7.34975589020306	7.22399898656389	7.03709528346374	7.41341885270126	7.33539202445568	7.16105019227065	0.141560308923962	0.562889043800925	0.865755360453189
Merged-chr6-137465210-2	chr6	137464710	137465710	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164401)	TTS (NM_001164401)	54489.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	2.66284336113034	2.61913308023389	2.62726442928532	2.62301591987992	2.44783858941221	2.939034343777	0.236090163239145	0.765524209874197	0.942148336413151
Merged-chr2-84623482-2	chr2	84622982	84623982	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25998.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.35798952965868	6.87366189993089	7.17174168970601	7.11987244324517	7.30118047485617	6.98137335399738	-0.0027019144106145	0.991987946562904	0.998363319124397
Merged-chr18-66270834-3	chr18	66270346	66271346	+	942.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	20992.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	2.58809668270142	2.59413386801548	2.57326061353278	2.30013667946575	2.22385519433303	2.39024168190709	-1.96891097880422	0.0242202831137237	1
Merged-chr3-9034685-4	chr3	9034180	9035180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27284.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	6.77742425121833	7.03324252712743	6.85100479244977	7.34838229798095	7.87594077423772	7.23638543113087	0.948179497356671	0.000823987900821925	0.0154838268409193
Merged-chr2-155406357-2	chr2	155405857	155406857	+	733.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24501.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	5.3210884676114	5.03719348212997	5.47022108383039	4.77862153524857	4.52446063668893	5.22307247180901	-0.896647285798514	0.0360591524638601	0.233513110608831
Merged-chr3-27226978-4	chr3	27226468	27227468	+	885.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	43964.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.96862518043839	4.69787732617891	4.86781182442201	5.04238467046043	5.03843562597382	5.26745154919227	0.572091225432269	0.135703646499801	0.492460596535194
Merged-chr10-95264858-5	chr10	95264223	95265223	+	728.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	58986.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.49762240772339	6.58101262077772	6.363377507079	6.35035286378928	6.29363934556767	6.21990560043638	-0.324370558991244	0.231322783387755	0.627171917892744
Merged-chr6-52064574-3	chr6	52064074	52065074	+	727.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38375.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	2.81111218375701	2.79744750266705	2.90792959201953	2.82210917470138	2.84450679941393	2.86028738386056	0.0272613349828474	0.968882978393204	0.992879230342768
Merged-chr2-27678574-2	chr2	27678074	27679074	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	1373.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.24499894173071	6.88576883535879	6.57182214112459	6.60155003498732	6.73205258200211	6.74436731025084	0.149450043716867	0.616009829887384	0.888205650504781
Merged-chr13-113494927-2	chr13	113494427	113495427	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	7917.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.17742008499047	3.28468504331553	3.23342264808513	3.40953646550221	3.14205107452786	3.18783365986215	0.0745542179275575	0.905880479313637	0.978560592879648
Merged-chr2-118007431-2	chr2	118006931	118007931	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	B1F|SINE|Alu	103771.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	5.14585713892707	4.99678873943246	5.09348882594355	5.01717604281921	5.28828738501133	4.82396208366654	-0.011250031144477	0.976803831364763	0.99476201281709
Merged-chr7-19577492-6	chr7	19576959	19577959	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022409, exon 1 of 3)	exon (NM_022409, exon 1 of 3)	172.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	2.67514801760937	2.98959810405074	2.85336315354327	2.9131064917151	2.71986818844254	2.92646039071174	0.0272867233405795	0.970216670781243	0.993401776171655
Merged-chr4-116176581-4	chr4	116176084	116177084	+	849.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3212.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	6.63152665236095	6.70156333991576	6.9462264846742	6.70870441773128	6.96820295211325	6.57548987949588	0.0202752252979874	0.941178588224718	0.986908937621943
Merged-chr3-96594199-4	chr3	96593701	96594701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293701)	promoter-TSS (NM_001293701)	-20.0	NM_001293701	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	6.9897187095845	6.83149052636119	6.7876763353899	7.11086220763622	7.31114358727789	6.8149118917606	0.351780727810127	0.187627683903997	0.572811133759911
Merged-chr11-3158787-4	chr11	3158326	3159326	+	983.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 10 of 32)	B1_Mur1|SINE|Alu	34637.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.3685161171595	6.65853226990953	7.04114259561697	4.92360182316026	4.4379697208254	7.09993142454642	-0.932046009902824	0.513793148580155	0.842787325048798
Merged-chr17-24170888-4	chr17	24170406	24171406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	7.8977304068533	7.8115651114163	7.937333223279	8.19571727419142	8.35314750925041	7.9227982912568	0.418714300185504	0.0676480879506087	0.340276998077273
Merged-chr12-28635935-4	chr12	28635407	28636407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011300)	promoter-TSS (NM_011300)	46.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	7.52507566494893	7.91365802150507	7.51948643526188	7.83536692996364	7.65362600314552	7.57632722232815	0.0324080658010405	0.89571146610875	0.975665889379756
Merged-chr5-101945907-2	chr5	101945390	101946390	+	729.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	L1M1|LINE|L1	124031.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.77330841371931	3.91946865556279	3.64505094143197	4.23676885769662	4.11847302194289	3.8866433522351	0.914983149289445	0.0838601632164392	0.383271254581647
Merged-chr7-141467392-4	chr7	141466882	141467882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	20.0	NM_001111049	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	6.82998531298442	6.97212150573315	6.68299535767546	6.93847659104502	7.19472709472055	6.85352176972598	0.264173219301429	0.315087090024131	0.709443354084583
Merged-chr8-85025203-3	chr8	85024704	85025704	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	83.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	8.15622703283752	8.5249663937816	7.58406791348415	8.09819152621694	8.34632621056885	7.41544008000195	-0.189850275747996	0.721888375648042	0.928606209603791
Merged-chr1-138291606-1	chr1	138291106	138292106	+	760.0	f0_balb.idr	Intergenic	Intergenic	17868.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.54361760407933	4.37817997323439	4.70851481640224	4.52863675161401	4.10003022963657	4.28080427813518	-0.594091431888188	0.202169799585084	0.591870546895914
Merged-chr4-149706201-4	chr4	149705752	149706752	+	801.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-4623.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.52373903525757	5.26266998288353	5.6348041285113	6.2075711990612	6.32782641063297	6.17344630773862	1.37194875129843	1.06879496953037e-05	0.000424295285423107
Merged-chr17-40790037-4	chr17	40789550	40790550	+	961.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204071, intron 4 of 9)	MLT1D|LTR|ERVL-MaLR	4096.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	2.87443759929313	3.14964680756282	3.08626348309903	2.99341347764413	3.07775866292022	3.15794412051179	0.153098534300288	0.819943179236686	0.957376438106023
Merged-chr19-21476977-4	chr19	21476478	21477478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4317.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.71851945354415	3.75943166444663	3.95143460358034	3.33778194508215	3.25217446641107	3.88366284933219	-1.0260441800422	0.102043488234779	0.426011468016632
Merged-chr10-121375458-4	chr10	121374964	121375964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10374.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	8.46035739144198	8.56558893982264	8.23197565779104	8.43605853860119	8.77063787397234	8.2478031549486	0.110866939768215	0.648698439048156	0.901893237722341
Merged-chr11-118169095-2	chr11	118168595	118169595	+	791.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001112699, exon 12 of 13)	exon (NM_001112699, exon 12 of 13)	-39876.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	2.83919853155223	2.63348404838731	2.92948732056842	2.69013070524153	2.73308136651207	2.94378847028988	-0.0679781539029051	0.926658302535241	0.983551822187064
Merged-chr2-11189860-2	chr2	11189360	11190360	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	17478.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.08581536797122	4.18046643841789	4.54557911668885	4.45789203391519	4.46075255311541	4.64897999337754	0.641039392350922	0.165726201539446	0.540863657924297
Merged-chr8-84723635-2	chr8	84723135	84724135	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	22178.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	3.51511775129626	3.06285451153092	3.96538976159326	3.41554260427815	3.21506110524695	3.1730976821625	-1.07591908147939	0.129293385602215	0.480965845367897
Merged-chr18-62250299-4	chr18	62249754	62250754	+	752.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70154.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.23207834485645	3.21378054268106	3.36303104083865	3.49869571353399	3.57042802921382	3.54348064064489	1.05873397441382	0.0741288264482465	0.358166861147801
Merged-chr14-64638248-2	chr14	64637748	64638748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-14283.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.16426286226932	5.35510478075398	4.73040154297288	5.26868962952644	5.26138612878822	4.79973055596898	0.0331200651392617	0.937517923860352	0.986057836872162
Merged-chr11-106742437-4	chr11	106741954	106742954	+	908.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8772.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	5.84044979728692	5.41799516872672	5.5066508753953	5.6910433663901	5.53737037404666	5.5697752287636	-0.0122847682343134	0.97109162997437	0.993718751783969
Merged-chr2-90463810-2	chr2	90463310	90464310	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 6 of 23)	MIRb|SINE|MIR	15364.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.7097949138549	2.95039018747005	3.26726144341688	3.04087653217345	2.88975864279348	3.17730180700752	0.211570534952977	0.772997691074408	0.943954628583841
Merged-chr13-43112741-5	chr13	43112203	43113203	+	679.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-10136.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.78447889821229	3.8640188352324	3.93013878849679	3.5540957144031	3.67190205867272	3.70092142937895	-0.712814038106904	0.183533824822641	0.566825684946619
Merged-chr13-117048598-4	chr13	117048103	117049103	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-23087.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.39358700180514	4.18706879256496	4.35718318839868	4.30849553091377	4.02799823904553	4.5057514718614	-0.0808357409099027	0.86570932277285	0.968641478520565
Merged-chr19-7581298-4	chr19	7580804	7581804	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	23819.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	4.90017957388231	5.04259652205485	5.44290160251637	5.06657480320945	5.14645650581798	5.33705961806886	0.0973931929668423	0.801579631956899	0.952995299515894
Merged-chr4-116668440-4	chr4	116667955	116668955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16781.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	7.65544489117643	7.66282206794588	7.54133822769115	7.3097965728735	7.92489515958928	7.43324743228672	-0.0390747973339107	0.883894910703345	0.973466734537782
Merged-chr7-89941217-4	chr7	89940692	89941692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291288)	promoter-TSS (NM_001291288)	12.0	NM_001291289	67669.0	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	5.38816160865847	5.75520882068383	5.62161118454293	5.66087171363056	5.89226085060171	5.28144845351979	0.0988728636856794	0.785137830148365	0.947850129107983
Merged-chr1-168430322-3	chr1	168429830	168430830	+	587.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183355, intron 1 of 8)	intron (NM_183355, intron 1 of 8)	1839.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	3.59210652562641	3.74471620539119	3.63276978095452	3.44535700171075	3.19073384052402	3.6513238037789	-0.82807651743111	0.171114248269443	0.549054232994131
Merged-chr1-131071714-1	chr1	131071214	131072214	+	547.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	26129.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.24923310979687	5.20138376525864	5.09991162501356	4.47090947991688	4.27540292580344	4.77350465923406	-1.57308047314747	0.000153382155552692	0.00405291279746853
Merged-chr5-112341523-4	chr5	112341022	112342022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153106, intron 1 of 6)	intron (NR_153106, intron 1 of 6)	1518.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	6.63003195170482	6.80720234835111	7.09429194652013	6.65048412738521	6.90624162495167	6.66099578273581	-0.152255429180819	0.582773175021502	0.873826743013405
Merged-chr15-5456799-1	chr15	5456299	5457299	+	668.0	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-39519.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	2.89452025029726	2.8858103641827	2.88465408587409	3.22482407709001	3.04291567310217	3.30920835831826	1.39923441162793	0.0406933905516975	0.25158003128209
Merged-chr8-46843647-2	chr8	46843147	46844147	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103902.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.56123689805735	6.29218724927684	6.60876974871731	6.4677134533978	6.87584858339416	6.77693403949961	0.36947179956833	0.192532547933665	0.579601410786647
Merged-chr3-95650757-4	chr3	95650250	95651250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7971.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.35016206229392	8.19580215258144	8.15241799016508	8.31711870408748	8.57152596264663	8.07321650991079	0.149833855199313	0.523914895498167	0.848428438699863
Merged-chr11-99448957-3	chr11	99448453	99449453	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10800.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	6.25007166433255	6.52182812705318	6.52589784312787	6.70675225157847	6.69215896578607	6.40144686191757	0.289046137091554	0.299212372600743	0.695964214930834
Merged-chr15-34495314-4	chr15	34494809	34495809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008287)	promoter-TSS (NM_008287)	-2.0	NM_026340	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	5.32647178581662	5.48247824405819	5.31496400913809	5.31898708894255	4.86416833630576	5.07897638427105	-0.577639275815547	0.119663498654678	0.462383226342457
Merged-chr17-45685344-5	chr17	45684829	45685829	+	839.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198167, intron 1 of 23)	CpG	889.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	3.12760101092418	3.57849502456317	3.41445215680269	3.56295351343791	3.58190273377651	3.11949811399764	0.196981051388179	0.771816525325734	0.943614978016208
Merged-chr2-80025830-4	chr2	80025346	80026346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13056.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	6.97616382030491	7.31158187214804	7.09904067172793	7.11292383859096	7.40216963457867	7.33432902311352	0.226254747011065	0.371241342239888	0.755436533897021
Merged-chr13-17805365-4	chr13	17804874	17805874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081058)	promoter-TSS (NM_001081058)	-277.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	8.21702506199135	8.03377097993605	7.91510736997451	8.46299370991063	8.10383478560027	8.15562815456652	0.262062258946588	0.261043005974493	0.658567723609624
Merged-chr1-39762206-4	chr1	39761705	39762705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41216.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	5.74852187325161	5.75805306125678	6.07453172300353	5.48232967731619	5.6774856526348	5.66945574414229	-0.446458540656752	0.167751833811598	0.543801409840869
Merged-chr11-97999907-3	chr11	97999415	98000415	+	801.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3742.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	3.94867010044462	3.82839451078096	3.6685780392341	4.02947773131431	4.10976594720665	4.19354825474264	0.849229024558528	0.0980505201925872	0.41742408696201
Merged-chr2-153145516-4	chr2	153145013	153146013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	L1MB7|LINE|L1	-15788.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.87907864689172	5.61110746365001	5.91425603183308	5.58674678444046	5.54576408380267	5.95247433572831	-0.195580238703427	0.556766624608284	0.8637300661975
Merged-chr2-143954086-2	chr2	143953586	143954586	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 16 of 23)	intron (NM_024281, intron 16 of 23)	38755.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.36059517279162	2.91822742593147	3.50302708434439	3.25727263142955	2.90141813415584	3.13869806549415	-0.726834583335671	0.309177285116496	0.704802606494279
Merged-chr13-10210908-4	chr13	10210394	10211394	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 2 of 4)	CT-rich|Low_complexity|Low_complexity	149909.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.92366695746362	3.87661991644665	3.89468988608495	4.41555147862583	3.9352761049931	4.20753441839403	0.869729148186332	0.0884065828506739	0.394669705770703
Merged-chr17-23748266-4	chr17	23747765	23748765	+	857.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-971.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	3.55334606851727	3.73570811304942	3.73792357159954	3.92658491231705	3.49857755349053	3.65066116598049	0.088585442786351	0.8762110840677	0.97123598762579
Merged-chr9-66879700-4	chr9	66879186	66880186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	L1MA4|LINE|L1	40019.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.25757019322072	7.25793227923143	6.70648151101187	6.58678170297083	6.69145995057873	6.82901097817083	-0.627253208681329	0.0258945243062106	0.190777145992026
Merged-chr11-118246702-3	chr11	118246143	118247143	+	901.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	1949.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.19953361761648	6.59494182360798	6.1226832026656	6.47381697420125	6.75206613070034	6.29360172645679	0.321477709472144	0.300433449710359	0.697298854445564
Merged-chr10-94923467-4	chr10	94922971	94923971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21107.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.80068336631804	5.48050563633654	5.56173829136246	5.00424777742444	5.42353773891258	5.00389948147994	-0.87002063145049	0.0210031663465697	0.166758727611199
Merged-chr2-129316977-2	chr2	129316477	129317477	+	905.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7005.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.37841024339367	3.38127309853824	3.21197140021748	3.19979559178848	2.93652823227357	3.1660315082204	-0.984237721281528	0.133199224534113	0.488270015200427
Merged-chr2-170324912-4	chr2	170324412	170325412	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-31449.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.21470290384659	6.90001354019509	6.9357550767475	6.87212521504322	7.0699914862619	7.32391873360745	0.103872930191286	0.698528484540175	0.920383812475161
Merged-chr5-140510775-3	chr5	140510274	140511274	+	605.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	5165.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	2.58278689246936	2.3856237740193	2.5359394930959	2.26199430019925	2.21912198450106	2.4200292676742	-1.37433783680718	0.109862483883006	1
Merged-chr7-19274152-2	chr7	19273652	19274652	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-2298.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	2.19300163210241	2.08982284489859	2.24164740282934	2.24984944323403	2.09100111507641	2.38061270125974	0.470063042315204	0.594243348629801	1
Merged-chr9-35059818-1	chr9	35059318	35060318	+	582.0	f1_balb.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-56910.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.96335917917245	4.892301049092	5.21773973076163	4.93711653258644	4.78231149176229	5.22019989922911	-0.0926106756937503	0.815121169518718	0.956370078970016
Merged-chr18-36320160-4	chr18	36319654	36320654	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20053.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	2.60694156561758	2.46317268300868	2.91978645276201	2.82666319975073	2.32176785897753	2.35780431349775	-0.830901011017049	0.360364951224558	1
Merged-chr2-145898709-3	chr2	145898184	145899184	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4557.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	2.94734573104396	3.20888358998192	3.01156545329777	2.72131911801013	2.63807936770199	2.84166022682544	-1.74544954007862	0.0196361822794256	0.159450322543812
Merged-chr11-106418836-4	chr11	106418333	106419333	+	973.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023913, exon 10 of 22)	exon (NM_023913, exon 10 of 22)	-36052.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	5.93595631201371	5.59311773975465	5.64729517460821	5.70932566924033	5.83897888818333	5.50578339363853	-0.0651974232794906	0.844485256914023	0.96373428957366
Merged-chr2-118730648-4	chr2	118730143	118731143	+	921.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2205.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	2.89835885711511	2.84960267382812	2.93424299488467	2.80052844467304	2.738595650562	3.00621464503293	-0.230139687866606	0.74447757774082	0.935982277711273
Merged-chr14-10439557-4	chr14	10439052	10440052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	13906.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	3.93654981147401	4.09075456955248	3.90525429168999	3.97620553487214	3.95462382714448	4.02437233263568	-0.00573069874190248	0.990769453792648	0.998026036719957
Merged-chr10-94572037-3	chr10	94571499	94572499	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-3258.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.08103017751044	4.04441467233297	4.2787825214872	3.99547485678401	4.0397390402256	3.92800152469924	-0.405000472906985	0.408062606125184	0.781926100186554
Merged-chr4-139310751-4	chr4	139310222	139311222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	-14.0	NM_145384	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	5.87344909687187	5.92823320276646	6.22848285200205	6.03822041190461	5.49655481429399	5.85877520749126	-0.353946806856065	0.293775175780512	0.690424156263798
Merged-chr17-67353622-4	chr17	67353172	67354172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	CpG	787.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.92723848070094	9.49679372849338	8.71305057980486	8.99647349603924	9.14737401537077	8.93946832490953	-0.0885459374866186	0.738114105646233	0.933914184307464
Merged-chr12-85496989-4	chr12	85496497	85497497	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23107.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.43562660890681	6.07561010914419	6.02932105403432	6.12377236580789	5.98377234859819	5.60978313014952	-0.454390568895178	0.167171201370133	0.542817176183676
Merged-chr1-60181303-2	chr1	60180803	60181803	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173444, intron 1 of 54)	intron (NM_173444, intron 1 of 54)	704.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	7.02341839201345	7.07659563812574	6.95837466618035	7.2171629959204	7.20483561321718	6.97420768445219	0.181436598994422	0.454068922072381	0.810100289331925
Merged-chr7-110668882-2	chr7	110668382	110669382	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41225.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	3.16166794705648	3.0801071396824	3.43382813895286	3.36230529387382	3.04854154125695	3.23226352637403	-0.0376879365493273	0.954126315648186	0.989495550016789
Merged-chr8-61908651-4	chr8	61908146	61909146	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5952.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.76845149721289	5.60465134723427	5.8967386858798	6.02135083485355	5.76619280084936	5.7865280500622	0.197538239599725	0.531317940828185	0.851563330256521
Merged-chr2-104110699-2	chr2	104110199	104111199	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12070.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	3.40407458558021	3.10181089617996	3.14951417922523	3.19699715871798	2.95737302113192	3.44390432342787	-0.0791525295448483	0.907274968837151	0.978875083701163
Merged-chr13-98872668-4	chr13	98872147	98873147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	18395.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.7454301145942	5.60223512996736	6.064156075478	5.36019357056643	5.93792892801325	5.81195467775497	-0.139618279029393	0.696396444463715	0.919442007192133
Merged-chr10-123085491-4	chr10	123084986	123085986	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8981.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	4.75078427298389	4.61943474509418	4.82253395222928	4.43480733242199	4.33544968294582	4.66569086039	-0.620741743839059	0.144882512221722	0.507780063817804
Merged-chr9-119898687-1	chr9	119898187	119899187	+	548.0	f1_c57bl6.idr	intron (NM_026236, intron 1 of 18)	PB1D9|SINE|Alu	3792.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	2.88034756965251	3.04447437507818	3.32949253206423	3.8259077555437	3.68774157880509	3.40395601613645	2.34300904624116	0.000824814836210245	0.0154942692666094
Merged-chr6-5269308-4	chr6	5268819	5269819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 5 of 8)	intron (NM_183308, intron 5 of 8)	-13086.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	3.43814415167442	3.13706166118088	3.53605957810937	3.26145606368356	3.15626367303793	3.23107270855484	-0.658709971067815	0.302426275983925	0.69908919064663
Merged-chr8-123040278-4	chr8	123039790	123040790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1994.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.47710799321001	5.53588275645376	5.33920991546341	5.13892922615062	5.53461503007498	5.30719386189978	-0.216899897512969	0.539091255930325	0.855750032878982
Merged-chr15-12330454-2	chr15	12329954	12330954	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	B1_Mm|SINE|Alu	8958.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	2.93859053378829	2.92023037426705	3.17988800091306	2.77427951867592	2.83367515913737	3.14217882598386	-0.436526615569865	0.540174912424362	0.85632302227606
Merged-chr13-92274008-4	chr13	92273507	92274507	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010829, exon 15 of 24)	exon (NM_010829, exon 15 of 24)	-80776.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	4.86897329467839	5.27340424922299	4.56987022599975	4.61673765613104	4.68839423399257	4.54853574397579	-0.741334186209553	0.093725937260573	0.407820309971122
Merged-chr19-32278011-4	chr19	32277504	32278504	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-66991.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.7880925865628	4.54920154040366	4.55939652336	4.29593004141356	4.32058897998178	4.36770838931751	-0.792565580606734	0.0681404231483396	0.341597079728102
Merged-chr17-6826756-2	chr17	6826256	6827256	+	724.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-43976.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.61044284903812	5.8498198764255	4.97388315308511	5.60827047180736	5.75399581166898	5.34553555873864	0.0834773662884929	0.837454315220717	0.962133986386607
Merged-chr5-16506864-4	chr5	16506379	16507379	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46616.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.68883832693782	4.90184070976774	4.91491889196376	4.39598266959336	4.6555841133029	4.32804159702339	-0.843533321595009	0.0525852853915422	0.293363488223898
Merged-chr6-140768378-4	chr6	140767895	140768895	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141510.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.4912534119199	5.63597663689816	5.82478251884744	5.62293965631461	5.8468379819371	5.81343011545172	0.215504347705492	0.503608085800652	0.837113380544582
Merged-chr6-17800393-4	chr6	17799871	17800871	+	656.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51201.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.65062324370201	5.18344940167349	5.03589531644535	4.97076914440684	5.27983708187945	4.99444772067704	0.25543466069957	0.532061466298556	0.851920843761815
Merged-chr2-154568730-2	chr2	154568230	154569230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007891, intron 1 of 6)	intron (NM_007891, intron 1 of 6)	696.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	6.21924924869238	6.2115866723358	6.11563025684358	5.91524632388219	6.14407998210305	6.2179405292837	-0.152947111430644	0.596313186114072	0.879909519357116
Merged-chr6-97281901-3	chr6	97281383	97282383	+	798.095215	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29103.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.60599677651757	3.54347045741986	3.68369360481479	3.86577029865088	3.62457255438791	3.75382543013625	0.476665829873619	0.382723825464186	0.764145276876741
Merged-chr16-21646238-3	chr16	21645759	21646759	+	663.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48406.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.23984790058412	4.2437153407279	4.78003162496399	3.99266649896789	4.05700480399065	4.87542287780032	-0.180393423379828	0.749169869280231	0.93719392324485
Merged-chr12-34683612-4	chr12	34683116	34684116	+	952.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-154727.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.53070241575033	5.57023033884916	5.44505213746407	5.34525536614029	5.82105074688709	5.47831588157393	0.108521785172382	0.754564703104111	0.939007834049516
Merged-chr5-113623593-2	chr5	113623093	113624093	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	20010.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.19915711805536	2.90991154911757	3.16466213853123	3.29736771747631	3.01866516396746	3.79460514803754	1.22779315383218	0.0859136919176863	0.388196028555869
Merged-chr5-122850054-4	chr5	122849554	122850554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030564)	promoter-TSS (NM_030564)	-134.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	8.40018110915685	8.66189472282729	8.33204853392183	8.42169569719473	8.5306556972519	8.490986979184	0.0073845768090783	0.972587940685669	0.993868590220018
Merged-chr1-136141679-4	chr1	136141175	136142175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	10285.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	8.73028762221589	8.35698117843272	8.38034353594955	8.6191249844255	8.90296006173769	8.10950454158198	0.124276058473215	0.652365267888857	0.902954729229878
Merged-chr12-100528503-3	chr12	100528016	100529016	+	692.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7694.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.50163984525235	4.6359105637375	4.27931394767177	4.59344294752669	4.43139502512346	4.25139567790822	-0.130924622360226	0.77339822768141	0.944067559391607
Merged-chr9-5333619-3	chr9	5333093	5334093	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-11883.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	2.86126878637466	3.15911750872606	3.43114522140848	3.19852967456234	3.11702960830036	3.50080729792602	0.453659704369121	0.518081075864838	0.845015978840761
Merged-chr4-154899884-3	chr4	154899378	154900378	+	665.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-835.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	5.34562832124779	5.74860525021804	5.57350868236792	5.37449430193022	5.52596872266534	5.46452408813223	-0.208376164136884	0.542457475932679	0.857201489999362
Merged-chr2-181187806-4	chr2	181187301	181188301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151465, exon 2 of 4)	non-coding (NR_151465, exon 2 of 4)	554.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	7.94988698635508	8.2481768854056	8.00417824754305	8.12635074646061	8.19634490657735	8.01545518792184	0.0578932793119471	0.79429126835867	0.950654294433248
Merged-chr9-106789090-4	chr9	106788587	106789587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030730, exon 1 of 22)	5' UTR (NM_030730, exon 1 of 22)	126.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	5.93156904636239	5.66906244188759	5.65854899774496	5.9565160729946	5.65422296134508	5.825807767644	0.0885030942981279	0.782972949423636	0.946845715924861
Merged-chr11-51923698-2	chr11	51923198	51924198	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-43933.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	4.73730257686607	4.38695446986407	5.28755256023216	4.79023030748812	4.50479447996226	4.70677514082897	-0.406784250506715	0.394660258697902	0.772514857254462
Merged-chr7-126908041-3	chr7	126907527	126908527	+	826.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9749.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	3.54676987964739	3.81137841705575	3.89455845421016	3.68398890903922	3.83322083152327	3.81706226912957	0.0855360196715652	0.874979433713893	0.970840739285065
Merged-chr3-95014114-2	chr3	95013614	95014614	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357863, intron 1 of 8)	intron (NM_001357863, intron 1 of 8)	1124.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	3.07539137846871	2.92404968171499	3.52181792404276	3.23035117326428	2.93717835720076	3.49304776935747	0.168876082747846	0.815388878309813	0.956370078970016
Merged-chr5-135571555-6	chr5	135571125	135572125	+	902.89447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356630, intron 2 of 3)	intron (NM_001356630, intron 2 of 3)	1424.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	7.1402272044636	6.85342893303239	7.13556822407428	6.54591059175778	6.55452143395332	6.06732726746539	-0.978223640432488	0.000810444865736545	0.0153192858673799
Merged-chr19-46501464-6	chr19	46500969	46501969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-179.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.87040890840082	6.67525985385798	6.89955502279134	7.36569987930706	7.12207356800716	7.2622933750641	0.664309592501464	0.0075651097343165	0.0826930074440832
Merged-chr11-119058149-4	chr11	119057647	119058647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17234.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	4.01798752574341	3.65026837791335	3.71762898828514	3.6453363896836	3.45425470183881	3.45277474968062	-0.992292543512863	0.0855877455770701	0.387392678094999
Merged-chr7-92636272-2	chr7	92635772	92636772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	870.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	4.24127941548191	4.06318627817668	3.92398251121948	3.72560449856398	3.8326891279247	3.83885849844973	-0.88580007209536	0.0859440792243496	0.388215443244267
Merged-chr17-48418435-4	chr17	48417934	48418934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009694)	TTS (NM_009694)	7984.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	5.17848107434548	5.02811601432014	5.17869227546259	4.85874893628837	5.06130383936008	5.27297665610562	-0.124599538439939	0.73982835520128	0.93427891606599
Merged-chr18-60807442-4	chr18	60806928	60807928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	3579.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	5.92829339835545	5.87249660083883	6.05358314750613	6.87895033155555	6.76880822776536	7.01582790791372	1.53235070443266	2.02265773403947e-08	1.71211907155601e-06
Merged-chr4-126096635-4	chr4	126096144	126097144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138721)	promoter-TSS (NM_138721)	-9.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	7.0149387024051	7.14699759125379	6.71634298885968	6.67473707644621	6.8945111046771	6.52972790849393	-0.404643658052145	0.144182356924089	0.506892240786698
Merged-chr11-11810580-2	chr11	11810054	11811054	+	760.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	2.0381041176506	2.28985907015275	2.17645828129011	2.25205875656315	2.1255180120361	2.38201944610749	0.557547719355455	0.536118399868806	1
Merged-chr16-76364807-4	chr16	76364309	76365309	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	8240.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.63337162641513	5.66449923464048	5.40107579094702	5.96248420452959	6.19013185737762	6.09699052352621	0.90213509209788	0.00398625140708759	0.051810060462503
Merged-chr5-86069581-4	chr5	86068982	86069982	+	880.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2264.0	NM_019992	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.1476202873745	4.00178375705446	4.29455219158929	4.21931110645425	4.28870259152894	4.27431242341884	0.322837793297996	0.489765643790896	0.829886769204432
Merged-chr3-31130035-2	chr3	31129535	31130535	+	880.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19885.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	4.02312007142233	3.7112496607641	3.76444236214982	3.9455295089586	3.99582379061042	4.17458734369345	0.586465377807401	0.260332343184115	0.657751605127497
Merged-chr2-103760576-2	chr2	103760076	103761076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153126, intron 1 of 28)	intron (NM_153126, intron 1 of 28)	694.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	7.47849909623969	7.73751848269581	7.17209519385854	7.26713393819988	7.51689688014474	7.08379376929559	-0.267237730848566	0.330996992760651	0.72228889285957
Merged-chr14-76114796-4	chr14	76114296	76115296	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3905.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	5.0789667078304	4.95917987836979	4.95837005412845	5.25009629115999	5.2412891261354	5.32488248644902	0.553826059375196	0.120490026299768	0.464197338103114
Merged-chr16-97535124-4	chr16	97534637	97535637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-944.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	7.53161503257933	7.72978728773465	7.53667083552866	7.33890019612892	7.67626347489322	7.63155025419987	-0.0678379148692821	0.776477543341216	0.944854393482537
Merged-chr18-62178748-9	chr18	62178299	62179299	+	907.3110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007420, exon 1 of 1)	exon (NM_007420, exon 1 of 1)	1182.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	7.56333087254186	7.63489650337533	7.2760955619563	7.39249715717741	7.43432930557885	7.48702985619524	-0.105378707738429	0.656216698717328	0.904602622074457
Merged-chr7-45491084-2	chr7	45490584	45491584	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2279.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	4.28243693491454	4.22745621302365	4.55816348268433	4.63824007065952	4.94312235112736	4.98849542141529	1.24162937375175	0.00421977099751536	0.0541348604935643
Merged-chr6-8345796-4	chr6	8345420	8346420	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	(GGGA)n|Simple_repeat|Simple_repeat	86632.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	3.36267453864108	3.25194816099514	3.00454231597197	3.31701787247285	3.37338282092628	3.26635400134064	0.402693951519515	0.535710534304969	0.853668337370661
Merged-chr16-95731566-2	chr16	95731066	95732066	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29159.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	2.74649464778393	2.7359901784947	2.81696713981488	3.00025344368728	2.56435874681538	2.95067259866439	0.423500753525596	0.575612055419918	0.87127133645093
Merged-chr12-4154436-3	chr12	4153955	4154955	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	20302.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.87296597459901	5.0954445441824	5.1369460552235	4.38888529380652	4.08503993962361	4.64475077315065	-1.58698806685873	0.00038990252507738	0.00862158100096696
Merged-chr18-60749249-2	chr18	60748749	60749749	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-584.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.28103748717599	5.87126374897043	6.19796289475457	5.95979210524121	5.5544932171116	5.64194700658845	-0.696768715831674	0.0348317484592201	0.228929651750934
Merged-chr5-142821427-2	chr5	142820927	142821927	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4040.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	5.97634707211851	5.99055753577948	6.31422337992131	6.48467754720141	6.1999907443485	6.64472379772519	0.589047582314505	0.0527040058070861	0.293760112235557
Merged-chr2-4880980-2	chr2	4880480	4881480	+	851.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175400)	promoter-TSS (NM_175400)	-584.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	3.1758147871704	3.06481214021901	3.36342115606592	3.10147364004795	3.20322571949322	3.27168040583606	-0.0342113857511883	0.957413813731709	0.98996830630481
Merged-chr11-101981228-4	chr11	101980770	101981770	+	904.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	B4A|SINE|B4	3521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	6.81592161514357	6.94143144140835	7.09207023231784	7.18108958098841	7.45587513751144	7.21106486212898	0.522400548098638	0.0366859864680078	0.235755913039079
Merged-chr4-138972858-4	chr4	138972358	138973358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029857)	promoter-TSS (NM_029857)	-47.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	9.04402712711279	9.29192004888542	8.83366536829872	9.02045271364423	9.29833236696906	8.65169532483941	-0.068389944707086	0.789943905270366	0.949315450392649
Merged-chr12-31948634-2	chr12	31948134	31949134	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	1611.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	5.3695423405946	5.69101352944725	5.75440580073657	5.98981450074822	5.95501436269531	5.81627509917217	0.57334362274932	0.0743846806736688	0.358764230784525
Merged-chr10-68134276-1	chr10	68133776	68134776	+	636.0	f0_balb.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	144450.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.17411128068956	5.23377016703132	5.267377385755	5.12960123650401	4.96272904437679	5.10331105537312	-0.336520605047089	0.346059288416159	0.734515828466387
Merged-chr6-98514550-2	chr6	98514050	98515050	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171796.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	3.30476097747799	3.52097805588385	3.54920639779245	3.60579101629218	3.63760634802275	3.39633273524545	0.351738370595537	0.550174455235226	0.860631826326949
Merged-chr13-54687767-4	chr13	54687262	54688262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	46.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	8.51613277080948	8.7253713079037	8.23135985243403	8.46524730581215	8.5771173450763	8.18498636588447	-0.121884379540201	0.616297299807015	0.888323384760338
Merged-chr16-20097517-4	chr16	20097020	20098020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029436)	promoter-TSS (NM_029436)	-34.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	8.39918115552467	8.82671412104946	8.29954340476533	8.28761194249313	8.50195164781506	8.11268952970561	-0.304775315994724	0.22610882743705	0.621140322788657
Merged-chr6-136684282-2	chr6	136683755	136684755	+	885.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-22362.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.59275845474004	4.3715184177715	4.62492802073843	5.90466018479677	6.15801817024221	5.54061639823685	2.86578687776833	6.02265593783346e-13	1.20464700787319e-10
Merged-chr3-107217039-2	chr3	107216539	107217539	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111143, intron 4 of 8)	intron (NM_001111143, intron 4 of 8)	4693.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	3.02763962279076	2.98515511373495	3.32450903180362	3.4123193360864	3.19000136530452	3.74434531606611	1.4069613085469	0.0375031055145173	0.239343335147412
Merged-chr8-126548643-2	chr8	126548118	126549118	+	779.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	44818.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.35888122650745	5.03834843058778	5.16001169825883	4.86020075302244	4.63547477188597	4.66682379703684	-1.02943274566989	0.00868864036725917	0.0913525887893482
Merged-chr5-123755411-4	chr5	123754898	123755898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 2 of 63)	intron (NM_001042421, intron 2 of 63)	5672.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	6.5591180996184	6.42983962951723	5.98543999168144	6.92283548520772	7.11561434634532	6.65732254358403	0.881815401342074	0.00401084149750675	0.0520321327291147
Merged-chr3-139021917-4	chr3	139021441	139022441	+	901.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	53260.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.34984748415231	5.49581312339793	5.31105817900535	5.05778176046517	4.97147470413427	5.49018400813988	-0.430233219478632	0.24886643649845	0.645843447218383
Merged-chr8-22843821-4	chr8	22843327	22844327	+	765.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-15712.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	3.70724121230062	3.49316271841717	3.40362136010906	3.76268562363206	3.18377122478807	3.64325982742537	0.0290339465603974	0.963678642480073	0.991121100730027
Merged-chr2-60021240-2	chr2	60020740	60021740	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	ID_B1|SINE|B4	104500.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	4.84782625492861	4.73097288649687	4.78942777798705	4.74892971149264	4.38720090573147	4.4881365945659	-0.57460237766313	0.171756903152453	0.550097814813575
Merged-chr2-178020938-4	chr2	178020425	178021425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2359.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	3.30627745656997	3.07715476741889	3.27762272185316	3.30299802369384	3.45519345087713	3.34932607996335	0.610274314166899	0.326208322076224	0.718559664091347
Merged-chr6-40576512-4	chr6	40576012	40577012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	5124.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	5.48492575702151	5.53360347085988	6.07145956205213	5.57614762996932	5.68213918335169	6.00861115873984	0.089938516968835	0.803007364674164	0.953422605427866
Merged-chr12-3426779-4	chr12	3426288	3427288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	-41.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	8.30502901237799	8.92052605044782	8.5083379635003	8.5087039024616	8.711300970748	8.6053985992112	0.00495243351006539	0.98401367376047	0.996464361754829
Merged-chr9-70009062-4	chr9	70008561	70009561	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-3487.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	4.95140821789062	5.37594780132765	5.25763499916329	5.21319341880762	5.24353051485256	5.05168890174268	-0.0593068975628892	0.873927450652457	0.970492962848917
Merged-chr3-159495895-2	chr3	159495395	159496395	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172092, intron 1 of 11)	intron (NM_001172092, intron 1 of 11)	462.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	3.46754054251488	3.38136957620019	3.42294937713837	3.5176929485862	3.48915811727281	3.60135107407053	0.405901498185858	0.478689221568451	0.823852002156652
Merged-chr17-56040312-4	chr17	56039822	56040822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013733)	promoter-TSS (NM_013733)	-94.0	NM_013733	27221.0	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	5.1581873312654	5.39911121126848	5.70852112994871	5.530960965875	5.55515958459288	5.47687547429344	0.182312346593624	0.60572169883564	0.883581756351046
Merged-chr7-64873010-4	chr7	64872496	64873496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023239)	promoter-TSS (NM_023239)	44.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	6.64460416584287	6.89272645470798	6.8008408605828	6.80479668041747	6.47150291504664	6.78470440155776	-0.149614637216297	0.579613869155513	0.872572319921262
Merged-chr16-57577747-2	chr16	57577247	57578247	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	28505.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.04170168274019	4.15429748269144	4.23108315161338	3.917400039835	3.93739893120764	4.38044298145644	-0.161858878100346	0.748420708359715	0.93698133248868
Merged-chr6-57581417-4	chr6	57580911	57581911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025992, intron 1 of 22)	intron (NM_025992, intron 1 of 22)	419.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	7.79648216066448	7.99440154526193	7.60306338551273	7.81075624009721	8.30850148434241	7.66944206765362	0.223903006652239	0.412001202889479	0.784193340882693
Merged-chr5-36698311-4	chr5	36697792	36698792	+	699.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	3.89284551515734	3.84053469261493	3.80340028159433	4.03886253919975	3.59876348017535	3.87365586064875	-0.00848242210572123	0.987459271931633	0.997218304929226
Merged-chr7-142399019-4	chr7	142398491	142399491	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-11121.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.87762117574953	7.94489406457723	8.08002648700053	8.21972729971425	8.64653366165235	8.00434363667389	0.506591577502678	0.0466519294282638	0.273328668065552
Merged-chr3-89998719-4	chr3	89998225	89999225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310681)	promoter-TSS (NM_001310681)	-9.0	NM_001282032	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	8.23747030603757	8.25076826664612	7.95266686442622	8.15765808057869	8.33491680305239	7.92053900944893	-0.00463414717207395	0.984334318043307	0.996597633599236
Merged-chr15-27941240-4	chr15	27940733	27941733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	84615.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	7.41270994308043	7.49508992749683	7.45938691135385	7.2300787966197	7.32799171956129	7.31336316235277	-0.243563112425761	0.279514070778611	0.677205609521119
Merged-chr12-100680226-1	chr12	100679726	100680726	+	589.0	f0_balb.idr	intron (NM_153587, intron 1 of 17)	RMER10B|LTR|ERVL	44894.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	3.34353784444443	3.51455738693759	3.34395133941033	3.04587645562983	3.23776939720734	3.35951881475085	-0.756707530448254	0.232317625262311	0.628652941199962
Merged-chr4-45799052-4	chr4	45798544	45799544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028270)	promoter-TSS (NM_028270)	22.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	3.95678386973174	4.04882009839332	3.90727139343439	4.29528054930208	4.1032900942777	4.51392159990555	0.926782021038026	0.0606875769560886	0.319101837203376
Merged-chr8-85085838-3	chr8	85085357	85086357	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 4 of 23)	intron (NM_010764, intron 4 of 23)	2588.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	4.34062282843347	4.41383071259945	4.88972777080628	4.34346851057821	4.53509453270796	4.1982686678751	-0.463809724453499	0.334527848477651	0.725012195351454
Merged-chr15-34237531-1	chr15	34237031	34238031	+	622.0	f0_balb.idr	promoter-TSS (NM_033521)	promoter-TSS (NM_033521)	-495.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	4.34155552099115	4.75304957254427	4.38875184439326	4.30805748809901	4.26030062907179	4.01539725244582	-0.799414983408452	0.0965388156458782	0.414211404747189
Merged-chr15-98918247-4	chr15	98917754	98918754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029098)	promoter-TSS (NM_029098)	-156.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	7.50824017364576	7.37151612950292	7.26462060867567	7.36412670100708	7.54204310101191	7.33337557934927	0.0472814364488465	0.841012105496334	0.962832831784718
Merged-chr4-120950786-2	chr4	120950269	120951269	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 1 of 5)	intron (NM_001005788, intron 1 of 5)	932.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	6.11023923193333	6.73055809989287	6.32284707286442	6.43675037868531	6.3388873169497	6.61476879250653	0.066197646018572	0.831638983736192	0.960478468368024
Merged-chr10-63240979-4	chr10	63240477	63241477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-2820.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	4.26597692551219	3.9249150985186	3.95641113561139	4.6214168433423	4.4277016860897	4.54128210718042	1.24299285221858	0.00970009201860331	0.0983819181721044
Merged-chr11-93969085-1	chr11	93968585	93969585	+	721.0	f1_balb.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	-564.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	6.29387553592753	6.47250855593361	6.1070013907292	6.18883961264517	6.45724970085045	6.07566046373382	-0.0758849243146848	0.80057646073655	0.952586388459414
Merged-chr5-34661151-1	chr5	34660651	34661651	+	540.0	f1_balb.idr	intron (NM_001080743, intron 1 of 5)	intron (NM_001080743, intron 1 of 5)	772.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	6.47156326455582	6.81310322023418	6.6004803494729	6.56985384931263	6.71479145546619	6.78623475544784	0.0815206917316156	0.762383596514827	0.941561416958418
Merged-chr17-43069055-3	chr17	43068559	43069559	+	891.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	52504.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	4.35348412447103	4.39974515416294	4.13662706515126	3.41544994562177	3.30152008751389	3.44882810395981	-3.40258066758397	8.88799276251915e-08	6.42530062366371e-06
Merged-chr7-90030362-1	chr7	90029862	90030862	+	837.0	f0_balb.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1203.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.25230292813357	8.46468952966852	8.0374903965957	8.34995426670404	8.60649481841287	8.19337395711299	0.183686198723815	0.446794322555509	0.806122541261987
Merged-chr4-127124546-2	chr4	127124048	127125048	+	676.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285885)	TTS (NM_001285885)	-1495.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	3.97738437396874	3.95952787238719	4.61111564220837	4.05320663481398	4.47105518140887	4.52824905449261	0.412860533814624	0.439407690544066	0.801126452029189
Merged-chr5-43845873-4	chr5	43845407	43846407	+	673.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22902.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.37169700315041	4.98780889003187	5.23310255834524	5.23990217653197	5.13119362159405	5.19975552359916	-0.0355398913743296	0.922602887973604	0.982621045978137
Merged-chr13-97573769-4	chr13	97573263	97574263	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	ORR1G|LTR|ERVL-MaLR	13763.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.58269623242614	4.78009697566675	4.58630790281774	5.5119235635005	5.39998402218033	4.79023994697428	1.34059800846392	0.00160101789368669	0.0260393856328934
Merged-chr8-107425097-4	chr8	107424620	107425620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026277)	promoter-TSS (NM_026277)	-82.0	NM_026277	67619.0	Mm.36817	NM_026277	ENSMUSG00000003848	Nob1	1700021I09Rik|ART-4|Nob1p|Psmd8bp1	NIN1/RPN12 binding protein 1 homolog	protein-coding	4.16573725481654	4.20654396567048	4.15474030420485	4.18303945222178	4.34104767578079	4.12745999407624	0.141181610252108	0.761869083442455	0.941338831902106
Merged-chr2-84458743-4	chr2	84458266	84459266	+	844.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	Lx3B|LINE|L1	15408.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	3.25324710943077	3.4919164794694	4.072742376293	3.63989183867988	3.81297314984792	3.62364666708886	0.155341177811225	0.809495013459819	0.954749848816598
Merged-chr13-52615229-4	chr13	52614737	52615737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	18355.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.87955894546349	7.85446283076838	7.64398950173836	7.54267725282072	7.45493693010411	7.00243637683135	-0.633658713935607	0.0141793633978834	0.127953637142414
Merged-chr7-35234417-1	chr7	35233917	35234917	+	581.0	f0_balb.idr	Intergenic	Intergenic	-19072.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	4.66838914547708	4.59203154757409	4.41718684375579	4.95885343700464	4.59105549674993	5.24770944693175	0.866728874680177	0.0518703913378809	0.290798512494434
Merged-chr1-93636385-3	chr1	93635885	93636885	+	818.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-658.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	5.46194943454833	5.72900700146657	5.71498472538814	5.78775833714146	5.81437592034698	5.89968923744763	0.352535732826996	0.262962684606276	0.660990291111768
Merged-chr8-124241064-3	chr8	124240504	124241504	+	705.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	9610.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.10741299453669	4.16785306051315	4.22555792986461	4.37184030127945	4.14536809932769	4.79710130353153	0.762364348317243	0.120885024147064	0.464965612223405
Merged-chr6-35253178-4	chr6	35252684	35253684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027875, intron 1 of 2)	intron (NR_027875, intron 1 of 2)	452.0	NR_027875	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	7.05855367402065	7.31430046192298	6.3125568972144	6.65610095180041	6.74608851952423	6.41619327484711	-0.549510965744855	0.104834923049476	0.432054705729044
Merged-chr16-94602462-2	chr16	94601962	94602962	+	764.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8957.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.37099534268432	7.47143334535458	7.22827032361102	7.18819933914642	7.58955650853726	7.32088914954284	0.0276581759364418	0.912029632146325	0.980237529509273
Merged-chr8-71278563-1	chr8	71278063	71279063	+	545.0	f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	5849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	2.73571473729699	2.8763215149752	2.84219372385849	2.86005263481319	2.65037072188388	3.03195818432936	0.155344456592621	0.832004768812436	0.960550696133584
Merged-chr1-155058123-2	chr1	155057623	155058623	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25141.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.57947817256591	4.18331480990545	4.5434469154234	4.50267750949433	4.57068459496696	4.72548781822266	0.384041423023499	0.388791455113654	0.768713986244105
Merged-chr9-62977400-4	chr9	62976899	62977899	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	3480.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.44751074190558	5.34692208519727	5.452665418715	5.68531080621737	5.61393875862017	5.73417324236951	0.492489910964124	0.125313264090647	0.473677648591949
Merged-chr15-64095885-2	chr15	64095385	64096385	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	ORR1C2|LTR|ERVL-MaLR	-35437.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.20659264143178	4.90493938121446	5.1122686145088	5.39019308499782	5.26946811248568	5.03491857306439	0.34554360570134	0.353777459814328	0.740929143625235
Merged-chr17-55702556-2	chr17	55702068	55703068	+	626.25	f0_balb.idr|f1_balb.idr	intron (NR_151542, intron 3 of 16)	intron (NR_151542, intron 3 of 16)	10068.0	NM_028370	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	2.88103476739237	2.82584998364786	2.79243002548234	2.71004613814681	2.46299793234234	2.54293415784202	-1.48533647333346	0.0601129177553595	1
Merged-chr13-62929417-4	chr13	62928951	62929951	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-35442.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.1632159166135	3.05146595617674	3.03569000042021	3.43003460799883	3.65686846769821	3.52310448523874	1.87657025058656	0.00368624721628165	0.0489507274772365
Merged-chr6-83685800-5	chr6	83685235	83686235	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7878.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.04484655548758	3.95658761941	3.65132036076618	3.51252641523507	3.28151760698632	3.37068527883933	-1.84984356908797	0.00206228019428298	0.0316894202042287
Merged-chr5-124526731-3	chr5	124526220	124527220	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 1 of 6)	L2c|LINE|L2	4671.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	3.69391585254217	3.39546674580605	3.54129054374919	3.42823525075901	3.00292669232623	3.0829252941538	-1.45747077611286	0.0307108584906267	0.211875048372023
Merged-chr8-46834105-2	chr8	46833605	46834605	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	94360.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.98371700311857	4.33036329341776	4.78066926047119	4.44459014306432	4.18576753202535	4.51842701464772	-0.0300701718322558	0.953336266236632	0.989446911725587
Merged-chr10-80104417-2	chr10	80103917	80104917	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1715.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	3.11775607556825	2.91160533072726	3.11039365020318	3.07299420395645	3.44756470293522	3.297644896638	1.01835792919424	0.128281935572099	0.479045116914244
Merged-chr3-88454889-4	chr3	88454379	88455379	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	882.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	2.95330098305292	2.77510659144649	3.12088976088685	2.92290600672026	3.14487537751176	3.24692315738854	0.719207935045492	0.304133302662542	0.700676242432783
Merged-chr11-6561047-4	chr11	6560562	6561562	+	974.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	879.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	6.06443799279172	5.95569213463855	6.38067243140294	5.89474701179609	6.22237233029764	6.25487975612744	-0.00320153578184619	0.991808122495862	0.998351393644539
Merged-chr1-55766944-4	chr1	55766445	55767445	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-164296.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.89453827778942	5.06040615240795	5.15167328512805	5.23440550314525	5.44290070193836	4.84753426356402	0.37037500637965	0.348038882900825	0.735982909356061
Merged-chr12-112942565-1	chr12	112942065	112943065	+	678.0	f0_c57.idr	promoter-TSS (NM_025399)	promoter-TSS (NM_025399)	-423.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	5.64698477775923	5.83548670651479	5.74131819906967	5.69993494458095	5.53936539432889	5.64440697774266	-0.219502513679017	0.48601545218581	0.827641640456729
Merged-chr3-53452597-2	chr3	53452097	53453097	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172501, exon 7 of 7)	exon (NM_172501, exon 7 of 7)	10661.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	2.63616908129422	2.67119709092354	2.99719876739068	2.74531912748076	2.71148774794985	3.06851475342812	0.370555627144192	0.624541452972837	0.892088737386295
Merged-chr1-92985910-6	chr1	92985423	92986423	+	985.172241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022320, exon 2 of 2)	3' UTR (NM_022320, exon 2 of 2)	7020.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.49682745656936	4.31338812660218	4.34358584106343	4.43606378116982	4.28057589942377	4.57738853874346	0.0987664750074085	0.824827017742568	0.958596193929081
Merged-chr3-75300138-2	chr3	75299638	75300638	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-30060.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	4.7193184748814	4.3018817110155	4.35378572981601	4.48827163198453	4.42559746538017	4.67230497233749	0.118706352537453	0.793168206366782	0.950282657772673
Merged-chr9-62342533-2	chr9	62342033	62343033	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	1190.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	7.04886062452058	7.45239420530755	7.47267139006123	7.38864879129234	7.63033613986378	7.479513316184	0.250855424972254	0.323255847335263	0.716622649530138
Merged-chr8-121792360-4	chr8	121791851	121792851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37218.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	4.88084878007396	5.07183632531816	5.45746169453054	6.29593105222148	6.26594050908607	6.5566398602769	2.26064748096528	5.76920236342116e-11	8.05442601099912e-09
Merged-chr17-21422777-3	chr17	21422276	21423276	+	942.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-451.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	3.54408346453434	3.67002455858278	3.61495681365864	3.520803279911	3.60359202181891	3.5783380809281	-0.14828517175026	0.789525645731374	0.949244735006745
Merged-chr17-21535676-6	chr17	21535201	21536201	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144515, exon 1 of 5)	5' UTR (NM_144515, exon 1 of 5)	162.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	6.18057138275037	6.24713464011242	6.41972573549282	6.57768918460987	6.71442225882332	6.44243223649274	0.508159217451479	0.0638732421072592	0.329332304452895
Merged-chr5-88631725-4	chr5	88631214	88632214	+	835.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	43866.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	7.29887231547165	7.78011712634724	7.25875204553213	7.12548851930926	7.35146788127161	7.07576158972637	-0.414820881318657	0.127273439042154	0.47690571538411
Merged-chr15-98504665-4	chr15	98504161	98505161	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	7187.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	2.26185674818577	2.15537733112135	2.52354318999035	2.23330116910018	2.01715190217478	2.28523236239704	-0.961648717639841	0.296773464128021	1
Merged-chr2-71382124-4	chr2	71381621	71382621	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-7139.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	4.23331496477351	4.25715684819774	4.15904308479929	4.45265886377069	4.59995116002957	4.36975959070818	0.691700891237773	0.122377700006041	0.467873720919988
Merged-chr11-53775966-4	chr11	53775482	53776482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 9 of 10)	exon (NM_001159396, exon 9 of 10)	5509.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.91272113354639	5.11501696137748	5.33735186757447	5.40592050049092	5.46433515386971	5.07151851355555	0.43041150727185	0.25354378020961	0.650896916687683
Merged-chr9-44879944-2	chr9	44879444	44880444	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081049, intron 1 of 35)	intron (NM_001081049, intron 1 of 35)	1330.0	NM_001357549	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	3.04830425643827	2.94016278093585	3.15110363330416	3.12781108489003	3.08523342698202	3.04780092471741	0.196780019287924	0.764625877216058	0.941983059468209
Merged-chr14-54893998-4	chr14	54893493	54894493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019402)	promoter-TSS (NM_019402)	-150.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	7.71701308039002	7.65084079945882	7.45163799448185	7.81914746006893	7.51994352644207	7.55945734871773	0.0342091987162091	0.885327291000242	0.973576084147613
Merged-chr12-80107365-3	chr12	80106875	80107875	+	990.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007564)	TTS (NM_007564)	5638.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.23152577057351	3.0907807568786	3.22270437659061	3.19634220054078	2.88952191299363	3.2940767666404	-0.218055235575319	0.745222061086561	0.936075317526238
Merged-chr5-62821739-4	chr5	62821227	62822227	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7904.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.94622023126718	5.20155474605526	4.86249917248372	4.64381841194471	4.7510221113098	5.03393282272225	-0.46669605552005	0.247856489970085	0.644952397580474
Merged-chr1-16619809-2	chr1	16619309	16620309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-471.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	5.47786907960449	5.68560207288544	5.71782558910658	5.1404282226716	5.40420052644997	5.23288641013099	-0.68630650556851	0.0468320943392513	0.273940590916023
Merged-chr14-73380476-4	chr14	73379982	73380982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4807.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.58711407159192	6.55064788338035	6.1984127315601	6.75541589305698	6.70073557520897	6.07004850759781	0.146596763484299	0.649305983087625	0.902147045789438
Merged-chr1-86218223-1	chr1	86217723	86218723	+	945.0	f0_balb.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	63443.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	4.07990664529944	3.86019796272311	3.97069992696626	3.54659535598921	3.48470914591547	3.51736036454551	-1.56596839329499	0.00478136234382963	0.0593271097383501
Merged-chr11-21571204-2	chr11	21570704	21571704	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	730.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	6.88471085745446	7.08886455918466	6.52216317229663	7.39302552073494	7.63244703802605	7.16160260206969	0.82898109819309	0.00377190755105033	0.0498087662687688
Merged-chr11-101582256-4	chr11	101581764	101582764	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	22.0	NM_144830	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	7.32569562725134	7.26046335995224	7.13516494421495	7.44242253195898	7.62681804115528	7.26727426177985	0.318228646289946	0.189762394810764	0.575826897174213
Merged-chr5-140753378-2	chr5	140752878	140753878	+	827.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173405)	TTS (NM_173405)	29251.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.5415578184651	2.26441237894372	2.63993178541612	2.2393428749609	2.12428810924832	2.46959663318792	-1.37337822807343	0.132984347531283	1
Merged-chr1-85325496-1	chr1	85324996	85325996	+	815.200012	f1_balb.idr	Intergenic	Intergenic	-54930.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.43898821589189	2.86397269120727	2.76831562885954	2.18895014150052	2.11038843487208	2.40294035187586	-4.03929490689383	0.000756639537809106	1
Merged-chr5-43897950-3	chr5	43897444	43898444	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RMER1B|Other|Other	29135.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.44259787296993	3.45084959520187	3.21514142985442	3.54409013525474	3.04332732380277	3.51695998717096	0.0317033609735803	0.961822157831818	0.990684873115088
Merged-chr2-60878079-5	chr2	60877459	60878459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	3479.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	8.22168792212264	8.493909744884	7.86297577692267	8.35356994178379	8.52450099084279	8.00910856448938	0.130544960719427	0.627395400415734	0.893213626166477
Merged-chr3-95626441-2	chr3	95625941	95626941	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	B3|SINE|B2	1461.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	4.92257142558718	4.6837108104915	4.91001347631755	5.19192081193528	5.16862415075163	5.04754437887969	0.653033612429509	0.0830143646956759	0.381226701603597
Merged-chr2-91272316-1	chr2	91271816	91272816	+	558.0	f1_c57bl6.idr	TTS (NM_001311144)	TTS (NM_001311144)	7201.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	4.40373408268487	4.22564109970292	4.2767744938626	5.03048619592946	5.38272085772626	4.35036558790233	1.62914772451775	0.00101366766768978	0.0182131951991177
Merged-chr13-113433691-4	chr13	113433181	113434181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69163.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.41235452112231	6.55012014136553	6.48349787588164	6.01114266249902	6.26776207175967	6.26131858544262	-0.490191935634666	0.0786203877697671	0.370369995218637
Merged-chr8-69717060-4	chr8	69716574	69717574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039965)	promoter-TSS (NM_001039965)	-172.0	NM_001039965	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	8.37496080401756	8.85995253737239	8.46883670067931	8.30127057889149	8.69604858268597	8.48577901114903	-0.113411979071073	0.645452487418306	0.900561664422279
Merged-chr11-54995930-2	chr11	54995430	54996430	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 14 of 24)	intron (NR_138556, intron 14 of 24)	-32990.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	2.94376333859678	3.01204397187836	3.04835901375172	3.12150853396308	3.06474243015567	2.87454438454837	0.131682768727457	0.84603610260348	0.963949453265197
Merged-chr4-46077045-4	chr4	46076547	46077547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 2 of 9)	intron (NM_021883, intron 2 of 9)	37825.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	4.23959354349194	4.18595390408793	4.57675830444059	3.67461037956073	3.52949220172646	3.82681965544096	-2.08684818850387	0.000129207305438096	0.00352148099275895
Merged-chr12-85110035-2	chr12	85109535	85110535	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	-798.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	5.91722323761515	6.18215986878411	6.30916683552347	6.22458314766593	6.39642525927075	6.51152316655154	0.401204079069492	0.172689803053925	0.551282299348207
Merged-chr1-164078649-2	chr1	164078149	164079149	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 7 of 7)	intron (NM_001164059, intron 7 of 7)	16573.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.4213289201663	3.61516537503858	3.51307119472243	3.69504017555104	3.90736355305371	3.8965423799415	1.07649779606372	0.0532954305085178	0.295991930878587
Merged-chr7-19227396-4	chr7	19226909	19227909	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-980.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	7.59217532584275	7.9458861299637	7.49759209725158	7.60214634127034	7.89702060671496	7.64346351237576	0.0367289221930432	0.884168415563191	0.973466734537782
Merged-chr9-21017327-2	chr9	21016827	21017827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	1387.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	6.23142163321505	6.11820563018112	5.97455365383526	6.36001432512236	6.54346207361833	6.85989643214753	0.783790323270795	0.0085435943026243	0.0902622078901313
Merged-chr4-133493425-2	chr4	133492925	133493925	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	5125.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	4.22505176077679	3.82787840329072	4.23191869630919	3.75543352290997	3.54666286026268	3.98830389767336	-1.04923824606312	0.0580781104780816	0.311391279569129
Merged-chr9-108690385-2	chr9	108689885	108690885	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1758.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	3.27953471207899	3.29911126295279	3.64202115726759	3.00872380913589	3.05313659622244	3.26259022662637	-1.31395143624912	0.0481917222389472	0.278332534466462
Merged-chr11-116617379-2	chr11	116616879	116617879	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6873.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	7.26999527828052	7.10647982981415	6.99225560028592	7.12354976738918	7.37257249776781	7.14319020896993	0.136333209358501	0.58282347307722	0.873826743013405
Merged-chr19-45007244-2	chr19	45006747	45007747	+	883.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053164)	promoter-TSS (NM_053164)	689.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	5.0201680599111	5.32065138010746	5.41270530564926	5.36765371146456	5.12367956217312	5.26491755459485	-0.00681594067317233	0.985124393917597	0.996873682039026
Merged-chr1-190910462-4	chr1	190909967	190910967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	MIRb|SINE|MIR	1303.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.3078651274063	6.79575200459188	6.49118975898196	6.16958824933383	6.28936606286716	6.28670242469349	-0.494333573396474	0.0914854407714449	0.402651658770873
Merged-chr1-153487716-4	chr1	153487205	153488205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-45.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.66921262336687	7.01357360489725	7.02495709604536	6.8878246728445	7.071711050311	7.13286729741567	0.189459133958744	0.469482389387211	0.818977178978635
Merged-chr11-78375886-2	chr11	78375386	78376386	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	10722.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	3.6523862572555	3.38109892123284	3.53892995168496	3.64703728565075	3.52265420489696	3.60975001577921	0.22503623169021	0.693419719652454	0.918953933419669
Merged-chr13-52632433-2	chr13	52631933	52632933	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 8 of 13)	ID4_|SINE|ID	35551.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.88904709610578	3.04859329121633	3.21247456435646	3.34178261030415	2.90051908890246	3.4443399379026	0.814235651599549	0.248942367924977	0.645891304368634
Merged-chr17-50994311-2	chr17	50993828	50994828	+	705.5	f0_balb.idr|f0_c57.idr	intron (NM_028162, intron 3 of 21)	RLTR14-int|LTR|ERV1	165050.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	7.06277878336386	7.48800767755048	7.27068598544285	7.38784065217807	7.65334590869496	7.2328406420569	0.231739272060751	0.380300311744282	0.762464628759352
Merged-chr4-153957209-4	chr4	153956693	153957693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163019)	promoter-TSS (NM_001163019)	-44.0	NM_175287	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	7.70035829068589	8.05151769795144	7.60529285021684	7.53921143651576	7.55973040155132	7.54457761496234	-0.375058347251134	0.119972446028126	0.463146853906851
Merged-chr1-80326186-4	chr1	80325683	80326683	+	716.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	MIR|SINE|MIR	14507.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	3.68497020062326	3.64358698689701	3.60291768382077	3.65024341122233	3.83548795445941	3.87909162435968	0.481826842538203	0.371384608783479	0.755584361766938
Merged-chr2-145810888-3	chr2	145810373	145811373	+	869.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B3|SINE|B2	24757.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.8322123908425	3.5845217290956	4.18160706405902	3.45634234925383	3.6240383435926	3.80552025966464	-0.81251593896434	0.16690677454979	0.542435988153521
Merged-chr12-69185185-2	chr12	69184685	69185685	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1027.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	6.33592707987493	6.33634426748208	6.80920843757394	6.14658066331832	5.95433367315315	6.42070565444929	-0.539396906934791	0.087692682889663	0.392804304364938
Merged-chr11-113684100-4	chr11	113683609	113684609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	42.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	7.64526388306198	7.87478667646016	7.53831731265192	7.66801535309558	7.67980027889264	7.41690208847649	-0.145567097002988	0.542882317889274	0.85744944965891
Merged-chr11-70092225-4	chr11	70091705	70092705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-439.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	5.99263537349792	5.6430210664872	5.74949230361962	5.50332445411359	5.44459681330065	5.56926151622179	-0.563510913166492	0.0842303437185374	0.38399290160706
Merged-chr9-111048080-2	chr9	111047580	111048580	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9164.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.89853014616097	3.83014002096867	4.0777164335254	4.31618916756577	4.15553810512559	4.23764862909382	0.885689320438558	0.0682065374762274	0.341659453091987
Merged-chr6-120363907-6	chr6	120363413	120364413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-186.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	8.63717146240016	9.23986744799461	8.56562309620601	8.7301017491424	9.0580948178516	8.72684609239852	-0.00983231722605338	0.97065780970999	0.99351865396095
Merged-chr2-84678231-4	chr2	84677767	84678767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290751)	promoter-TSS (NM_001290751)	-93.0	NM_001290751	66958.0	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	4.83564072301343	4.80111166533512	4.75326920088146	5.11803851022637	4.91596561209807	4.69647363576383	0.287126054463073	0.469815365983718	0.819126978705139
Merged-chr12-72768418-4	chr12	72767910	72768910	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	7199.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	3.14932375544185	3.15778147368547	3.29630713074161	3.1826892518024	3.16899716421704	3.52343324112164	0.388966928994282	0.54177473017785	0.856939277940475
Merged-chr12-8993436-4	chr12	8992936	8993936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159527, intron 10 of 26)	B4A|SINE|B4	19435.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	6.536644916013	6.83725833057715	6.65378498014502	6.62197617844175	6.63799991117232	6.48706189387381	-0.151597280294421	0.568846092639014	0.868758065383828
Merged-chr4-9634322-4	chr4	9633828	9634828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	9389.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.00731526454168	6.84831781235339	6.57731401425867	6.64514468174574	7.54047489353389	6.58187664805081	0.291556250037662	0.409768104918474	0.783037226945994
Merged-chr18-36470382-2	chr18	36469883	36470883	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-15888.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	3.95818887402874	4.28821404260499	4.40080485773059	4.14023700793708	4.12930369898593	4.16468289165359	-0.219691309911338	0.651365137935245	0.90278654780238
Merged-chr11-106193090-3	chr11	106192598	106193598	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 1 of 10)	intron (NM_001252449, intron 1 of 10)	505.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	5.99299331938215	6.11304387855496	6.29345222475936	6.35696087990527	6.48944371450812	6.61528057973042	0.591751727781984	0.0363480174421876	0.234602958693481
Merged-chr11-121353834-2	chr11	121353334	121354334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	CpG	613.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	8.45237375768399	8.94547725276164	8.28594466707207	8.48954569943959	8.68032342007158	8.29635620377076	-0.134601525588914	0.60913487354827	0.885053989692691
Merged-chr11-3451313-2	chr11	3450813	3451813	+	840.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145355, intron 1 of 7)	L3|LINE|CR1	-1124.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	5.89899674530132	6.35662085333619	5.92531865580084	6.15762703615028	6.23859766647392	6.17047112346087	0.174132735862281	0.573178343089463	0.869962295500663
Merged-chr13-52608953-2	chr13	52608453	52609453	+	777.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	12071.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.44037109486492	3.69012924570128	4.27376392885463	3.7973830939301	3.48477702904254	3.61619250522179	-0.662001415613286	0.290608122093437	0.688463987220644
Merged-chr8-105264019-2	chr8	105263519	105264519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	575.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	4.87757611262864	5.02953407527365	5.19526040364201	5.0681337543667	5.22933679669061	5.02452618429533	0.181297694931945	0.627504790966559	0.893285292753682
Merged-chr11-95858781-4	chr11	95858285	95859285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045187)	promoter-TSS (NR_045187)	-32.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	8.10030849301389	8.28428664777339	8.06485379949033	7.95074351320957	8.36334035164765	7.84782144610094	-0.102313873643946	0.678227881767628	0.913379457468915
Merged-chr15-84855560-2	chr15	84855060	84856060	+	793.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356573)	promoter-TSS (NM_001356573)	-461.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	2.58371852995745	2.65860647774308	2.98359242278908	2.95290368067532	2.6113821266304	2.94123450454403	0.471445097163265	0.541870381087246	0.85701585686177
Merged-chr9-63604446-3	chr9	63603945	63604945	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	1799.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	6.02643248236435	5.61283363302787	5.57642962249666	6.40402840508579	6.30406232621844	5.57844172858908	0.680845387592308	0.0689360717276749	0.343589151711934
Merged-chr5-96159778-2	chr5	96159278	96160278	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	1769.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	4.26774567073814	4.12137439256759	4.43644541991075	4.24383908543767	4.26264318557554	4.4207760585709	0.0898586192131777	0.845212805887623	0.963760118842549
Merged-chr11-76576071-2	chr11	76575571	76576571	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	1668.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.99191336900637	3.08684887118971	3.21111577821414	3.2101887503237	3.02186067091456	2.92665149120127	-0.157949313993844	0.814618202511734	0.956369939298364
Merged-chr5-110416626-6	chr5	110416076	110417076	+	986.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 3 of 18)	(TG)n|Simple_repeat|Simple_repeat	-29449.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.21754473784452	3.70647155392839	3.67328218181257	4.07610235077628	3.57792406837956	4.10228852386859	0.125326439305933	0.833343998158844	0.961070491919313
Merged-chr9-20544631-4	chr9	20544116	20545116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23197.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	4.92056112683467	5.02301887443729	4.88867501131	4.95748085921259	4.85425727217058	5.05998922994757	0.00632321854049401	0.986634414199593	0.997070852223121
Merged-chr6-116123457-4	chr6	116122964	116123964	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	69910.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	6.75897413146461	6.66690836204666	6.21214969181435	6.30991169938259	6.48360748558955	6.01311391544427	-0.457190137446056	0.145885321572772	0.509302356675446
Merged-chr4-118428083-4	chr4	118427591	118428591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019422)	promoter-TSS (NM_019422)	-2.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	7.31865459638723	7.54350851796283	7.77543737281574	7.74999986191084	7.63406466632342	7.766003989435	0.236393336705363	0.327329618397181	0.719493934423263
Merged-chr17-65768667-4	chr17	65768148	65769148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	4104.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.12305465486913	5.9090664973019	5.18318776663604	5.73412809699292	6.09500713299376	5.971860563203	0.234936818674593	0.548016096227739	0.859456555901125
Merged-chr9-44966990-4	chr9	44966509	44967509	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1409.0	NM_145400	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	3.33574367941747	3.30395295955525	3.25054683922404	3.25050564426682	3.27989957160602	3.59053521256921	0.298270976493312	0.628960891445146	0.89397074295706
Merged-chr10-23787277-4	chr10	23786775	23787775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-66.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	6.99435631854682	7.20704051799594	7.04556735729	6.77244075739851	7.08960266325872	6.82029401829798	-0.270134295386232	0.294164846524127	0.690812501399287
Merged-chr5-33274028-2	chr5	33273578	33274578	+	941.400024	f0_balb.idr|f0_c57.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	926.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	6.99785597394123	7.15328683656369	7.20503295035321	6.99464036877341	7.2117458649869	7.02471246541702	-0.0482473947988788	0.843845200341837	0.963657728808602
Merged-chr2-27750496-2	chr2	27749996	27750996	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39913.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.14453506985785	5.22864169449822	5.17268629577997	4.98158818710436	4.71724583405963	5.26722417289196	-0.403272090337951	0.300296780099874	0.697154579580807
Merged-chr11-104469086-3	chr11	104468589	104469589	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-228.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.6929966219476	5.72782591604543	5.31499138838167	5.22331186420755	4.80900157792115	4.94985983106222	-1.19945538565647	0.00146557992679355	0.0243117971588193
Merged-chr11-55460160-3	chr11	55459545	55460545	+	575.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1163.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	5.21887910508347	4.72640406181084	5.29663715972217	5.05132491556799	4.82864566502889	5.1121171630008	-0.215282996839685	0.598378349317689	0.880780437003557
Merged-chr3-152895144-4	chr3	152894631	152895631	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	87076.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	3.24997805631342	3.48390608876852	3.33500927548676	3.17950920113261	3.2970450781682	3.23408530169084	-0.49019152753929	0.430076322980666	0.796105989515053
Merged-chr1-58711144-2	chr1	58710644	58711644	+	727.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289704)	promoter-TSS (NM_001289704)	-347.0	NR_149257	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	8.16281822675609	8.41654485653249	7.94139544507349	8.16095514753893	8.36947327752728	8.03605405889177	0.00925728633582487	0.969493548167724	0.993164504846051
Merged-chr3-144897915-2	chr3	144897415	144898415	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1904.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	5.31745699824365	4.96183781965293	5.217112043561	5.13281904638863	5.05614371684911	4.97180836231608	-0.237239906924114	0.525180388272371	0.848874487604023
Merged-chr7-105762956-4	chr7	105762459	105763459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10724.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	4.55862704592305	4.27097085425266	3.96846794704884	4.88852222978214	4.97894844758423	4.21510311946978	1.08496485973904	0.0436698732489095	0.262663207553511
Merged-chr13-99329892-1	chr13	99329392	99330392	+	689.0	f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	14786.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.05289505053251	3.06246901269344	3.5371833708385	4.13985481252087	4.24767768653434	3.77936875090417	3.38296495243673	2.40790973174532e-06	0.000117857266446508
Merged-chr6-113680198-4	chr6	113679722	113680722	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16828.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	6.59614633758213	6.60850469668572	6.60192344409623	6.38634642046488	6.52034876350756	6.52444918939965	-0.198389130056819	0.443932503979551	0.803884349333946
Merged-chr11-63806755-4	chr11	63806234	63807234	+	931.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	115550.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	2.90946782397255	3.06321150449009	2.97950302808944	3.31181033200046	3.31801160651569	3.34780383721029	1.48453360954813	0.0242928814457656	0.183493289700369
Merged-chr7-67226313-4	chr7	67225771	67226771	+	790.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175215, exon 3 of 3)	exon (NM_175215, exon 3 of 3)	3655.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.30143821812177	2.30143587942043	2.65669996851843	2.31184310540292	2.16351856421796	2.29607229773712	-1.1211939972627	0.201880872366849	1
Merged-chr7-128381217-4	chr7	128380721	128381721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36951.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.75455987120909	5.72674843592962	5.77435224420273	5.2895121462592	5.29501095629775	5.49022445764348	-0.754001578841479	0.0197915850465163	0.160289878192576
Merged-chr3-95015609-4	chr3	95015113	95016113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-156.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	8.35614969111328	8.34419754626461	8.18052712776449	8.39141019326128	8.5580664029909	7.86102295317772	0.0202010895491747	0.937532341055337	0.986057836872162
Merged-chr1-191314104-3	chr1	191313602	191314602	+	837.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4016.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	3.97673689201154	3.41108259866615	3.73356702156429	4.01826568562066	4.00625399478664	4.2339982355953	1.091343591772	0.0558928507782085	0.304407142790495
Merged-chr16-4630138-4	chr16	4629614	4630614	+	864.404175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 23 of 27)	intron (NM_030205, intron 23 of 27)	-5168.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	4.33838049968949	3.91589010715691	4.25124969818643	4.37942535998362	4.24987203850511	4.4884729119179	0.514391963162568	0.28559426715429	0.683136294349102
Merged-chr11-5528208-2	chr11	5527708	5528708	+	702.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134033)	TTS (NM_134033)	7567.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	2.85030983421198	2.99183407552619	3.29714115593818	3.02330189400012	2.76087228068801	2.97947434699256	-0.607073432329849	0.398514176100834	0.775273667788888
Merged-chr6-114875273-4	chr6	114874771	114875771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	46550.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.16282911571335	7.2451903234722	6.97372384413295	7.19411577008325	7.23015731526719	7.12577366318914	0.071108919570691	0.76714465871719	0.942573703853445
Merged-chr7-127387222-4	chr7	127386720	127387720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030226)	promoter-TSS (NM_030226)	-54.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	5.12345564816619	5.57324669564752	5.65877270657718	5.4937585186224	5.55431184382021	5.41469008596798	0.0514141381458566	0.885893781185758	0.973636976161493
Merged-chr2-173000977-4	chr2	173000472	173001472	+	857.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175112, intron 1 of 11)	intron (NM_175112, intron 1 of 11)	855.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	6.02612441066042	6.15838064218564	5.56819311770387	5.93551736677447	5.99573340150802	5.69182449955088	-0.116546170258211	0.728874977335177	0.930478966998914
Merged-chr18-38443717-3	chr18	38443209	38444209	+	884.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 2 of 7)	intron (NM_001355749, intron 2 of 7)	24802.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.23157931892167	3.84965952068579	4.33963498480014	4.93285088016626	4.69477069662594	4.81216090946661	1.69853642424201	0.000302506572481541	0.00701727540648008
Merged-chr6-34876199-4	chr6	34875742	34876742	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199145, intron 2 of 3)	intron (NM_199145, intron 2 of 3)	1823.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	6.79559416440449	6.77953726862211	6.33766739926079	6.10231981209126	6.0771194657577	6.1203325088816	-0.92979534528851	0.00127910420190347	0.021826039891153
Merged-chr3-90231610-4	chr3	90231104	90232104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206924)	promoter-TSS (NM_206924)	7.0	NM_206924	23922.0	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	7.59731199319552	7.76506189299116	7.31064763796268	7.3207451421748	7.42425033875376	7.17225036843754	-0.386768106351118	0.123306988743628	0.46985061681457
Merged-chr8-121589694-2	chr8	121589194	121590194	+	695.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-774.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	4.76013216734421	4.84765364651208	5.09771198623602	4.79497325286769	4.47972580486872	4.4904386570358	-0.704451401254039	0.0947462572592464	0.410324099601611
Merged-chr4-134558045-3	chr4	134557513	134558513	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5847.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	4.64229648244679	4.52903675377821	4.37624681123293	4.3056855002338	4.181548949007	4.30820512503351	-0.690571499917647	0.12090172710289	0.465008362243564
Merged-chr9-22127430-2	chr9	22126930	22127930	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102404, intron 4 of 4)	ID2|SINE|ID	3168.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	4.37222482343254	4.33389705266484	4.94120761664019	4.59918818362192	4.64816037817425	4.90618549926831	0.363799307970812	0.429622064463568	0.795827826691029
Merged-chr6-39447995-4	chr6	39447477	39448477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	27599.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	3.90909986039002	4.2407707496958	3.45800709501626	3.56253756627623	3.70031410088963	3.7102174748922	-0.822156892125812	0.177722054314629	0.55882263155115
Merged-chr18-4256594-4	chr18	4256081	4257081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90749.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.81904681023098	6.06632505614993	6.34220352709818	5.92114075401261	5.83440116820139	6.25490269998947	-0.135127253928254	0.679827453066617	0.914056754309378
Merged-chr16-19981218-2	chr16	19980718	19981718	+	782.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	1831.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	5.27272972025441	5.46016294052291	5.27572764988891	5.5290756903235	5.90082686821817	6.06363435378363	0.935721379236004	0.00713206644007754	0.0792210631886227
Merged-chr4-138038620-4	chr4	138038109	138039109	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	40784.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.73821870721748	4.85974731590783	4.70199566736222	4.3212297293708	4.17627096021249	4.34755428985581	-1.24831004542833	0.00373965047698063	0.0494940093667257
Merged-chr17-27932525-3	chr17	27932025	27933025	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	URR1A|DNA|hAT-Charlie	23219.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.86782265732237	6.04611397284092	5.97512215771361	5.0933025677017	4.99897005122986	5.11582564106626	-1.73308377815146	1.98526097387471e-07	1.3048151272841e-05
Merged-chr18-80478232-4	chr18	80477735	80478735	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26D_MM|LTR|ERVK	-8568.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.16275350472453	4.82537224864193	5.01874023134165	4.76880120704998	4.76182794894238	5.0491179062789	-0.334511989863362	0.39776549719975	0.774593722474986
Merged-chr11-21047627-2	chr11	21047127	21048127	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43697.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.39274950221736	6.47356478770665	6.27254367322805	6.35691552773023	6.61880975506909	6.29162524802303	0.0870539820584437	0.756722303754334	0.93968315923397
Merged-chr2-160093351-4	chr2	160092830	160093830	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76677.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.24062838704947	5.62959004252868	5.25964479262182	5.88500005002276	5.7661810412294	5.93533055690614	0.85043973724442	0.0125748213416658	0.118135456045764
Merged-chr10-84409069-4	chr10	84408569	84409569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31402.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.14605725076049	6.59428560539799	6.17196495126039	6.28565598716332	6.2738018970496	6.41193156131968	-0.0150312646133238	0.959808038230886	0.990242512723989
Merged-chr3-105815481-4	chr3	105814997	105815997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045845)	promoter-TSS (NR_045845)	-70.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	7.20688654307847	7.1176664932496	6.70040832145304	6.94382424285736	7.27740376030967	6.75958459398448	-0.0196698844230454	0.946057799916508	0.98796006280508
Merged-chr15-76305923-2	chr15	76305423	76306423	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 3 of 26)	intron (NM_153122, intron 3 of 26)	1322.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	3.60747048022347	3.61113442489156	3.88198360046516	3.54192958282321	3.36714841247582	3.38137261070935	-0.964600267804709	0.0986480014655547	0.418897826279453
Merged-chr15-4816978-4	chr15	4816476	4817476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81761.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	6.96478920477716	7.16137974966998	7.13630774314433	7.08927675586411	7.26992498554996	7.19393863022171	0.150335143489486	0.53197935763746	0.851867550687707
Merged-chr2-160660856-1	chr2	160660356	160661356	+	602.0	f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	14959.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.92433133815603	3.75880560025508	3.58933465794932	4.01724095955213	3.85550081709485	3.98073835970898	0.555615962681873	0.297877248279182	0.694689926124663
Merged-chr8-84660182-4	chr8	84659706	84660706	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2646.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	4.41489890398804	4.13092013494768	4.42158488909546	4.19850258479346	4.49418705566821	3.96455007405417	-0.199132415732011	0.69188244748412	0.91852122294077
Merged-chr18-46595330-2	chr18	46594830	46595830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	MER68C|LTR|ERVL	2205.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	2.76693020139612	3.09810132681734	3.11402654989875	3.13205627461081	2.87551563774968	3.12893307569047	0.210059971010235	0.76658028162835	0.942514441514779
Merged-chr19-45363641-4	chr19	45363131	45364131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-103.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	4.76752266794026	4.43717381245238	4.37529037733727	4.64082508423856	4.53270784428558	4.39789515213755	-0.0357646053083652	0.935843025825993	0.985953563515988
Merged-chr5-113643290-2	chr5	113642790	113643790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 1 of 4)	intron (NM_001359060, intron 1 of 4)	313.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.65985013669268	5.82475439873284	5.67966156068246	6.08304972368332	5.72416850772809	5.98977500160409	0.37058507102405	0.242243155563038	0.639326946903326
Merged-chr6-83005700-3	chr6	83005168	83006168	+	845.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033079, exon 6 of 10)	exon (NM_033079, exon 6 of 10)	27803.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.25887203859983	7.3248145532771	7.10562475538879	6.80407110934341	7.17322824248975	6.63644430622041	-0.49996819985722	0.0684453331616708	0.34221507914146
Merged-chr3-117996834-2	chr3	117996334	117997334	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127898.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	4.22767664534431	3.89554015911262	4.05222698275095	4.38319225036963	4.2347692604384	4.35247252881206	0.706064174408704	0.141359278031855	0.502119843364898
Merged-chr4-129783866-2	chr4	129783366	129784366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-36613.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.09572840962241	4.16794141775156	4.24598016085897	4.15083172445022	4.12171266398179	4.39764237580537	0.146335448276414	0.755679256930798	0.939400440743942
Merged-chr5-136085558-4	chr5	136085061	136086061	+	897.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1645.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	7.78546284992587	7.68119669079188	7.49242857009898	8.16913560001979	8.04149398834589	7.85716608315106	0.526169613820373	0.0229265702472716	0.176832967847143
Merged-chr9-21237650-4	chr9	21237126	21238126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	1706.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	8.31095669784023	8.38867169272376	8.12272424140509	8.31114013871094	8.40584258430348	8.07068933411498	-0.0099275654803148	0.964626562423513	0.991519129389361
Merged-chr17-26663716-2	chr17	26663214	26664214	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12682.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	6.47525313838655	6.56362502519278	6.28571603372003	6.56595449997413	6.66565318557915	6.32544152586479	0.132595609676835	0.634801665541379	0.896354115104213
Merged-chr7-29237720-4	chr7	29237216	29238216	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	122.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	5.85882859523996	5.93384050951718	6.38927279443357	7.27605009911918	7.49747882461263	7.20086896120145	2.00884006415349	1.85026333186112e-12	3.383663985e-10
Merged-chr15-76700178-2	chr15	76699678	76700678	+	733.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_182805)	TTS (NM_182805)	-1364.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	3.96158674033235	3.97158185932013	4.02554419906494	3.98568209322117	4.00192271768109	3.7333083874706	-0.192161951959133	0.706076555080436	0.922878730238431
Merged-chr6-136803280-2	chr6	136802764	136803764	+	825.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175652)	TTS (NM_175652)	1167.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	4.88216192933771	4.78006652780174	4.96606843757029	4.60021242719698	4.48295210206283	4.99661411906276	-0.406511153880116	0.334238850888244	0.724872195509535
Merged-chr4-130799238-9	chr4	130798813	130799813	+	883.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	6776.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.40974744932529	7.46721419012591	7.8089900969895	7.534320465932	7.90843598720132	7.54691178131751	0.166010539263035	0.518224147266056	0.84514310695073
Merged-chr11-61529526-4	chr11	61528990	61529990	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 7 of 10)	intron (NM_001252188, intron 7 of 10)	24346.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	4.66259135901042	4.45034946417711	4.60007526976421	4.26179408559839	4.33912347127572	4.23243787820864	-0.742344233381635	0.0932031444458119	0.40657919757719
Merged-chr19-57354874-4	chr19	57354390	57355390	+	736.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	6009.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	3.82824656937046	3.52760029090151	3.88031123062943	3.9126289511879	3.4026420754846	3.90144525293731	0.0135064848875269	0.981808136766543	0.99582830941535
Merged-chr14-55778942-2	chr14	55778442	55779442	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 8 of 26)	exon (NM_001361604, exon 8 of 26)	5130.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	2.65794560155712	2.74582231545732	3.09896537309644	3.27003530136396	2.98730556287021	3.22745743478727	1.53781644969022	0.0394098022155379	0.246538667976128
Merged-chr3-116007424-4	chr3	116006939	116007939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-10.0	NM_021388	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	8.53233842668705	8.5185825784382	8.60826663580169	8.50094843392419	8.51427033897941	8.64909595555475	0.0028925591630506	0.988424840718303	0.997390908272651
Merged-chr10-67186937-2	chr10	67186437	67187437	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1187.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	7.21094543568782	7.52137183245882	7.25906764799496	7.33227126092081	7.65349455851034	7.31648928442756	0.161465325899967	0.524213564655512	0.848636745951617
Merged-chr8-84640490-1	chr8	84639990	84640990	+	543.0	f1_c57bl6.idr	TTS (NM_007578)	TTS (NM_007578)	22362.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.95432824238457	2.65844824903379	2.95620577733606	2.61336122067132	2.80942947923271	2.97058794151462	-0.291681203152295	0.699358773206272	0.920603734905492
Merged-chr3-40705244-4	chr3	40704732	40705732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175515)	TTS (NM_175515)	-3639.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	6.0038674369054	5.82939123085812	6.05434259412303	5.84046936530793	5.9674390834287	6.3128354441351	0.146490225308549	0.640278309000186	0.898404369829977
Merged-chr9-107626320-1	chr9	107625820	107626820	+	628.0	f1_balb.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	9022.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.75624064485516	3.72108787526226	4.47939332822004	4.09535222273902	3.83651100038367	4.47105538108878	0.353297577593967	0.552329032191295	0.861640746007974
Merged-chr7-130648281-4	chr7	130647784	130648784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-44272.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	6.04587897786224	5.96595568604082	5.56830485430698	5.89677977512697	5.7278870004576	5.44283034993059	-0.31668478506579	0.355466088636258	0.742392248082664
Merged-chr3-87907463-4	chr3	87907030	87908030	+	806.8690190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	680.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	6.15539748183481	6.28251238916002	6.35029247295545	6.18867185393075	6.11889729100736	6.49815885668609	0.0105467882472661	0.97104060344775	0.993695152337081
Merged-chr17-7925413-4	chr17	7924898	7925898	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-602.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.11415762566631	4.89197457457121	4.86222249778821	5.23948628219173	5.12933747482602	4.58446457365582	0.131494118469293	0.754996342999484	0.939180610396804
Merged-chr11-121658481-4	chr11	121657962	121658962	+	821.795837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	14689.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	3.86845660699787	4.23120405904738	4.03206388010757	3.85213344401232	3.73788077678	4.00563966624783	-0.589422545516105	0.257456560801092	0.654760239352566
Merged-chr15-103361535-4	chr15	103361023	103362023	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	5268.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	3.10692942949726	3.36891980032875	3.50782495464094	3.09435411472759	2.91187217627486	3.14673263549482	-1.23371855351076	0.0678077925605074	0.340787447816836
Merged-chr10-25296762-4	chr10	25296254	25297254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	CpG	2409.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	7.04443797961572	6.7851546003714	6.5164889720047	6.91767755626875	6.6064316991163	6.40113203250269	-0.224550552577142	0.4535612961216	0.80983494973791
Merged-chr6-72851758-3	chr6	72851260	72852260	+	925.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 3 of 6)	intron (NM_019715, intron 3 of 6)	47532.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	3.19412510698855	3.19542850363717	3.09821160737742	3.16434913395119	3.17557901105979	3.50169522313262	0.481267690420404	0.454247465506321	0.810104016757399
Merged-chr6-128842095-2	chr6	128841595	128842595	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15780.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.8869446334564	3.01666755409819	3.02499828421968	2.88898644862919	2.97561177561361	3.09662747125989	0.0487535591409984	0.942613047381383	0.987202156853573
Merged-chr12-85474460-3	chr12	85473946	85474946	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010234, intron 1 of 3)	CpG	556.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.86126414997373	7.7906058546978	7.5925106768989	7.41338877995062	7.58949551185892	7.1814981459966	-0.496797079747748	0.0427167984017445	0.259177358864323
Merged-chr10-58408189-4	chr10	58407697	58408697	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 3 of 9)	MTD|LTR|ERVL-MaLR	13824.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.18736662652342	5.21982472894446	5.50782244766363	5.76167480393912	5.6030849940665	5.96154655127004	0.896693011021203	0.0088192680873852	0.0922679200430999
Merged-chr18-13787656-3	chr18	13787163	13788163	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185070.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	3.8214959022093	3.93863712514478	3.72573826004077	3.82246178475381	3.78737579133615	3.7428292382735	-0.164255772604185	0.754026410991482	0.938646802994813
Merged-chr19-34598694-2	chr19	34598194	34599194	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101605, intron 1 of 1)	intron (NM_001101605, intron 1 of 1)	733.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	4.0359590717187	4.21649835500157	3.9142067474817	4.37787205982933	4.81536481383965	4.51750718899427	1.36909799615836	0.00502698423201052	0.0614673481230171
Merged-chr11-110479249-4	chr11	110478754	110479754	+	722.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356346)	promoter-TSS (NM_001356346)	-86.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.87161962985095	3.80567967551394	3.87914871818748	4.84437029264413	4.78804628905522	5.07081695207704	2.86674955008033	6.13681486213347e-09	5.82913345945664e-07
Merged-chr12-98283678-4	chr12	98283183	98284183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15048.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.00754357190205	6.92832731012234	7.2193563138716	6.92407510010406	7.10042605412824	7.08538552058363	-0.0162882416119105	0.947786083430747	0.988008807662239
Merged-chr15-73592020-2	chr15	73591520	73592520	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	4506.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	2.84778374246848	2.61107439905206	3.01546661839625	2.76190272530105	2.62806615537805	2.73353153035979	-0.642095613809768	0.395444744604894	0.772833669416666
Merged-chr17-28519360-2	chr17	28518860	28519860	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11501.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	2.9596697043838	2.75510182770363	3.1033135837736	2.74871764017508	2.6442176143967	3.00757188583142	-0.695769607389141	0.350868082963784	0.738815453164556
Merged-chr18-61556217-6	chr18	61555892	61556892	+	896.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357498, intron 1 of 10)	intron (NM_001357498, intron 1 of 10)	1119.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	7.10690113478049	7.41949828554992	7.25873619159134	7.0793852768854	7.15869407746822	7.47461456585559	-0.0407687743072	0.873931199083099	0.970492962848917
Merged-chr19-38020377-4	chr19	38019885	38020885	+	909.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	23192.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.31008872751777	4.91014278576898	4.97729238039856	5.61972953642081	5.5575638297495	5.47843443474304	0.931569275472804	0.0101480785478749	0.101441773163331
Merged-chr4-155559683-4	chr4	155559163	155560163	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160017)	TTS (NM_001160017)	-2718.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	4.9092373298688	4.99216810121743	5.22156262556008	5.30873114531945	5.25949261167332	5.34602522755532	0.548114624161487	0.127448039527409	0.477202010311607
Merged-chr4-130788498-2	chr4	130787998	130788998	+	898.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4039.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.68636016003316	6.58786529716328	6.83119985095341	7.00350314124508	6.85105599164008	6.68851044364913	0.249432449748291	0.339158211594823	0.729057813336113
Merged-chr7-80027124-4	chr7	80026697	80027697	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	CpG	969.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.43515185483673	6.39555024250609	6.55096087756656	6.65146189423758	6.27680236126033	6.6588628089117	0.119854833045903	0.670528055549052	0.910029595108128
Merged-chr7-123364448-3	chr7	123364059	123365059	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	5356.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.99178237337699	3.96588705249892	4.31110685562181	4.09316672852189	4.03248736431452	4.25199498960352	0.0988631076016845	0.840953376499051	0.962832831784718
Merged-chr1-97337108-4	chr1	97336628	97337628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-208825.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	4.20324393037511	4.39661921172621	4.27767606192851	3.84517819871394	3.96298702065122	4.02075672118657	-1.01875395270896	0.0359123272125201	0.232924851718713
Merged-chr14-54393399-3	chr14	54392890	54393890	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	16082.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.77090435682557	6.70619765272617	6.8563772502699	6.32731334510672	6.20572138055318	6.04697605605461	-0.922435848900192	0.000687021128407846	0.0134951968962606
Merged-chr9-103215311-1	chr9	103214811	103215811	+	616.0	f1_c57bl6.idr	intron (NM_133977, intron 13 of 16)	intron (NM_133977, intron 13 of 16)	-13246.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	2.45318356242414	2.54286098314706	2.6359534405213	2.51355055422268	2.51799134987421	2.45641302733122	-0.269253796231517	0.73172945092556	1
Merged-chr10-5289520-3	chr10	5289039	5290039	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347732, exon 55 of 146)	exon (NM_001347732, exon 55 of 146)	-94832.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	4.36956497754847	4.64679118768212	4.13191887380959	4.06212829052832	3.88676844478094	3.88712005028558	-1.30070435683032	0.00995128999481693	0.100113184002351
Merged-chr13-102694255-5	chr13	102693751	102694751	+	921.8800050000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	693.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	8.29173904931031	7.93409439553216	7.9309150654294	8.33764607562485	8.76624411464386	8.08674061867131	0.517220719903808	0.0544503699686419	0.29969005848873
Merged-chr17-31082559-3	chr17	31082134	31083134	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	MTD|LTR|ERVL-MaLR	24940.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.1929713704071	5.35418565019391	5.50541056088877	5.26020593639534	5.26651038168828	5.06600785431749	-0.283039956388477	0.427068643115479	0.794027919897564
Merged-chr3-98227263-4	chr3	98226778	98227778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026328, intron 2 of 5)	MIR|SINE|MIR	5122.0	NM_026328	67709.0	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	3.4336785859396	3.53096089766183	3.48934034921488	3.22213956818357	3.06406872563051	3.39850778669516	-1.0467600076753	0.0940276529070823	0.408470969149656
Merged-chr14-69089359-4	chr14	69088849	69089849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60060.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	5.79282163189399	6.00641880257778	5.91356471570334	5.68885276397162	5.97327645784328	5.97458163810206	-0.0379707180850186	0.902226810758043	0.977426235982703
Merged-chr1-161489857-2	chr1	161489357	161490357	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4800.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.45388945153723	3.39768847812483	3.38397327093977	3.85863075509458	3.78103624409699	3.62934543423143	1.24481598140751	0.0286080897567702	0.20270986395992
Merged-chr12-24831573-4	chr12	24831131	24832131	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	32.0	NM_001083341	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	2.99577306300353	2.46296798212329	2.62049967289671	2.39358986340746	2.22345069578923	2.28555595969453	-2.84981738876893	0.00379618425020905	1
Merged-chr18-32347876-2	chr18	32347376	32348376	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-29341.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	3.98593362631712	3.88764668623235	3.80391230531038	3.96357985106813	3.81766284774579	4.02364931653314	0.100079803174527	0.844387551340118	0.96373428957366
Merged-chr1-136570221-2	chr1	136569721	136570721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54680.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	7.53578899741321	7.30234349824728	7.43471065912154	7.947313725607	8.07180602618382	7.70773341145429	0.718338001826115	0.00233109341381982	0.0347378920166938
Merged-chr13-101851019-3	chr13	101850522	101851522	+	674.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82805.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.04972598938497	4.85208029626554	5.08518622146172	5.05507348461371	5.38026922485568	4.85470224906635	0.286576922784208	0.46900627992879	0.818873922830115
Merged-chr5-143919529-6	chr5	143919042	143920042	+	834.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008886, exon 8 of 15)	exon (NM_008886, exon 8 of 15)	9541.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	5.27644787098012	5.09630596451279	5.49119277076846	5.25052966772299	5.37597156087776	5.28969292978901	0.0462080190228268	0.89666852959964	0.975845415359997
Merged-chr10-40068888-4	chr10	40068391	40069391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-43623.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	7.29920563929362	7.5893161613018	7.09018822634174	7.12452401255849	7.26307629965272	6.9375816060644	-0.340479452764803	0.201251939230579	0.590817080593818
Merged-chr17-24480666-3	chr17	24480088	24481088	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1510.0	NM_019988	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	3.67890821976553	3.34584568492284	4.16108935968479	3.64243159606642	3.45216964445043	3.97582490468571	-0.203640116771938	0.751182222145933	0.937743726412801
Merged-chr9-7828025-2	chr9	7827525	7828525	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	MTC|LTR|ERVL-MaLR	8781.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	3.65847671447827	3.97720588433237	3.55076009236292	4.13262154013225	3.84103957635316	4.18667102672788	0.937734743885129	0.0961574283322833	0.413411154195982
Merged-chr11-21571987-4	chr11	21571483	21572483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008618)	promoter-TSS (NM_008618)	-49.0	NM_001316675	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	7.0128500590333	7.24519385639618	6.64896727120507	7.20222593860865	7.34934070267615	7.10344745313411	0.334694471434136	0.22389442152898	0.618583567117513
Merged-chr3-135612972-4	chr3	135612466	135613466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 11 of 24)	intron (NM_008689, intron 11 of 24)	78581.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.1732519398865	4.13906131590244	4.30555864481282	4.41529448338384	4.10191286193579	4.57171194104289	0.44273786787424	0.353070695799043	0.740436687653974
Merged-chr19-4120651-2	chr19	4120151	4121151	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	924.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	4.05923719154945	4.33659062652174	3.88314048097935	4.15082944797032	4.0094760599095	4.15540856262243	-0.0398006400138903	0.937023606924321	0.986037792257163
Merged-chr2-27266093-4	chr2	27265638	27266638	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 29 of 29)	L1MEg|LINE|L1	-18835.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	4.68410422702838	5.06088934795411	5.14155412873338	4.89364738453257	4.7426085432049	5.00936411044181	-0.20395296626184	0.614399653767244	0.887435546271868
Merged-chr3-105850278-3	chr3	105849792	105850792	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20566.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	2.98191646312837	3.11509651554374	3.45669857658028	3.35667870191762	3.49111037970001	3.47466559337777	1.00870109399765	0.121649641643723	0.466615100449027
Merged-chr12-36054723-3	chr12	36054199	36055199	+	570.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12221.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	4.42819756813978	4.43802350287223	3.81928316383037	3.62358574256171	3.21813781364461	3.66453788301293	-2.54684874434334	6.43754563242972e-05	0.00195494633935479
Merged-chr13-119614344-2	chr13	119613844	119614844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9475.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.62902615752298	4.70053290335009	4.59863521975047	4.19138018884695	4.30311544633689	4.45923260463217	-0.834096449782456	0.05472152294209	0.300446617021803
Merged-chr11-94630523-2	chr11	94630023	94631023	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133807, intron 1 of 6)	intron (NM_133807, intron 1 of 6)	699.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	6.49855665049621	6.48547183426398	6.25028448010768	6.39546143539888	6.45168912469839	6.01364051882135	-0.178339319100316	0.54472732506869	0.857894224757806
Merged-chr2-165901247-3	chr2	165900748	165901748	+	830.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-16410.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.70859791308892	5.8209536072241	5.65053181361442	6.49012893155489	6.39074940099098	5.98141099803259	1.00129243896649	0.00136328585109207	0.0229734055514852
Merged-chr17-35809654-4	chr17	35809171	35810171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12042.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	5.35715095910276	5.11402262613002	5.30612269674727	5.16585054406029	5.07104535923885	5.2769094216357	-0.19277673930438	0.589580002050204	0.876892891421814
Merged-chr2-24347814-3	chr2	24347369	24348369	+	824.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039701, intron 2 of 3)	intron (NM_001039701, intron 2 of 3)	2498.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	3.23954992654717	3.27013064584237	3.35651225711645	3.3247936977868	3.37895300401759	3.37205750127416	0.290805317644828	0.627891198569206	0.893422669218278
Merged-chr11-48772453-2	chr11	48771953	48772953	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27907.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	3.07393229232546	2.9055401295849	3.08951308621337	2.95195073869547	3.30067816319884	3.04294462299714	0.403027600588662	0.556437376456821	0.863603167403937
Merged-chr7-27229858-2	chr7	27229358	27230358	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1261.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	4.02386887812381	4.10844242307542	4.41143895277682	4.24584424233589	4.22318899922277	4.17730482555559	0.100960929496215	0.832505123464414	0.960616839788396
Merged-chr7-100191037-4	chr7	100190524	100191524	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12341.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	2.81496274009861	2.46781332541384	2.50108036378478	2.61186087948082	2.39689791103768	2.70440291558665	-0.18501476569226	0.821736999785401	1
Merged-chr1-45921147-2	chr1	45920647	45921647	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	4447.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.34090403456348	7.4406882097686	7.16228974187591	7.52108530196861	7.84772974219905	7.2072226962889	0.350477011624074	0.196020031498887	0.5838291434642
Merged-chr17-45613206-4	chr17	45612729	45613729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11127.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	5.62120669722707	5.57020651649241	5.93477702705541	5.33542272908394	5.48552144057236	5.97362429594179	-0.174162740009549	0.631652757981213	0.89524721007624
Merged-chr15-9128669-3	chr15	9128188	9129188	+	706.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11766.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.00286345128334	5.26160005763973	4.79094404799395	4.40312010671077	4.19320858888884	4.70047708970773	-1.43138347305442	0.00128265181415003	0.0218613052338786
Merged-chr6-54941338-4	chr6	54940843	54941843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	RLTR28|LTR|ERVL	30318.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.24590594367403	5.28013613717261	5.50826386523244	5.5900998778641	5.63664838977352	5.65194610727069	0.54952156505355	0.0959434115409106	0.412951471230873
Merged-chr11-75141265-4	chr11	75140790	75141790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26862.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.36001312497201	6.22557152366532	6.08478489275111	6.2673806262126	6.25358283714534	5.50988169193969	-0.271849951328097	0.436302597115875	0.799472869647494
Merged-chr1-177257542-6	chr1	177257145	177258145	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8878.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	7.00463419919213	6.46397473587806	6.96108992446517	7.09765256921931	6.5495210082822	6.89592515091393	0.0532719620637851	0.862266512061549	0.967996224966109
Merged-chr13-39881289-4	chr13	39880794	39881794	+	959.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	406717.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	3.34234828656666	3.51216172179044	3.60192991048152	3.95617223700539	4.05744134907273	3.83360882525177	1.61319888999916	0.00387379406330934	0.0507140447282407
Merged-chr1-58445535-4	chr1	58445018	58446018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027351)	promoter-TSS (NM_027351)	-32.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	6.02374505509187	5.821312373411	5.9549761898003	6.07037515101976	5.99485146988372	6.01601805830826	0.160413492676214	0.58427142071545	0.87456162664244
Merged-chr4-139169946-4	chr4	139169446	139170446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10709.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	7.89193796940577	7.56183656546657	7.39731401444888	7.35771475100624	7.45712401291737	7.10021973082163	-0.466659690541327	0.075233035727236	0.361209828772069
Merged-chr3-90251716-4	chr3	90251245	90252245	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013901, exon 4 of 4)	exon (NM_013901, exon 4 of 4)	-2113.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	5.28109821999748	5.39465768564865	5.59387865195536	5.86074577059333	5.72605562961385	5.73536468651334	0.666493810920697	0.0402699618099811	0.249965160931362
Merged-chr1-131278747-2	chr1	131278247	131279247	+	596.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019777, exon 2 of 22)	5' UTR (NM_019777, exon 2 of 22)	816.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.37780578729968	3.64163070758312	3.36632423724758	4.13471027036429	3.32250100603275	4.78315877015267	2.3472446179151	0.0388686692905465	0.244413212589132
Merged-chr10-127581231-2	chr10	127580725	127581725	+	782.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	39923.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.93740987144509	3.66001793839855	4.21855812828047	4.05814842742065	3.5035122033778	4.06981725047692	-0.161152744561246	0.784533853407943	0.94764742850442
Merged-chr13-94159700-4	chr13	94159216	94160216	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101920.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.93009969659123	3.64998955319201	4.14100269021105	3.50798189697647	3.44730378756122	3.47613740605825	-1.50947514678468	0.00970592390659546	0.0984050830291209
Merged-chr8-70776778-4	chr8	70776280	70777280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	-68.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	7.94767094622848	8.08761314707489	7.79130524865665	7.80746649516498	8.09708784025239	7.5866365022621	-0.135071644374618	0.587204770305612	0.875769926947203
Merged-chr15-78926678-3	chr15	78926176	78927176	+	698.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008495)	promoter-TSS (NM_008495)	-49.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	4.5582169727545	4.57977322543756	4.90909710922555	3.76008126314408	3.48289350233603	4.03137405349921	-2.79171715178831	6.31750479547758e-07	3.61283119602817e-05
Merged-chr12-69168721-5	chr12	69168268	69169268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081406)	promoter-TSS (NM_001081406)	-46.0	NR_155206	69706.0	Mm.28847	NM_001081406	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	6.00251776091874	6.25102425109571	6.21963857234911	6.56833289339932	6.30861634893416	6.32016430306439	0.40598359386217	0.156695855649214	0.527590691411799
Merged-chr11-83538695-2	chr11	83538195	83539195	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8177.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	3.36849579953878	3.23031619978894	3.13747031729132	3.46646594416312	3.13889502762047	3.27132394259277	0.179987445931212	0.778316719690919	0.945439632982223
Merged-chr1-36566563-4	chr1	36566019	36567019	+	705.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-8138.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	3.09440431741336	2.84832618513147	3.38371816806351	3.3022445569569	2.76882463562731	3.12629148788209	-0.167509363120766	0.822484266599685	0.958097562158607
Merged-chr16-77013658-4	chr16	77013174	77014174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013918)	promoter-TSS (NM_013918)	-395.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	7.19087770226766	6.60693672523088	6.82357298532951	7.19570343765654	6.44495463966992	6.95369065125113	-6.60309091388297e-05	0.999838449801001	0.999986127056153
Merged-chr11-99447285-4	chr11	99446785	99447785	+	941.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-9132.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	6.19736332911808	6.05950579307316	6.34250080727409	6.71881239652282	6.65597667520758	6.58215681708244	0.749118348792988	0.0056684761341633	0.066915648929899
Merged-chr3-30855138-1	chr3	30854638	30855638	+	658.5	f0_balb.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	-812.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	2.827512626964	2.5053143050368	2.76507383151974	2.4890368785771	2.78134618631964	2.65227694611329	-0.303028234233579	0.704342926150984	1
Merged-chr1-95665965-2	chr1	95665465	95666465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1629.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.25315174660713	4.51553351876354	4.44843880931686	4.38115742582485	4.40203949914495	4.42562398869839	-0.959647316397869	0.0492816318553777	0.282159638300576
Merged-chr1-37357328-4	chr1	37356824	37357824	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-11893.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	5.50329545437187	5.30720260414527	5.04627808577696	5.27553209745583	5.06311865824897	5.1478659992441	-0.298595255713818	0.418922383334035	0.788773176248009
Merged-chr4-139579634-3	chr4	139579133	139580133	+	862.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4913.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.65776678739216	4.5855751599431	4.49856985315117	5.65820653263647	5.59668381556463	4.80331201232858	1.77115203706869	5.46684677434856e-05	0.00169923566081433
Merged-chr10-118599830-4	chr10	118599331	118600331	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-43306.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	6.52480417806696	7.02499882293749	6.50245159141786	6.8010847267029	7.01636642515343	6.46665512665433	0.116931685692485	0.706720829258827	0.923123712928456
Merged-chr1-157038015-1	chr1	157037515	157038515	+	849.0	f1_balb.idr	Intergenic	Intergenic	70635.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.16701583116779	2.91188141196864	2.97484448332975	2.8958491527617	2.7380875173448	3.27280684021359	-0.18408694377028	0.801861422466499	0.953086016975963
Merged-chr2-122570661-4	chr2	122570175	122571175	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40602.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.82818142444826	6.56025774938442	6.71006821091206	6.91649323209423	6.81096493481676	6.56620137715966	0.118943927360235	0.6569234751982	0.904733577044406
Merged-chr6-122812944-2	chr6	122812444	122813444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7240.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	3.29116377812669	3.23555391175579	3.26584666442645	3.3491005694102	3.24583606360806	3.75015448660445	0.745984053821566	0.237516352550202	0.6339458111627
Merged-chr2-148685969-4	chr2	148685460	148686460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	4840.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	6.56893606239665	6.73256957061304	6.5116286083329	6.69818360108683	7.04353149317207	6.64171761266856	0.322516545195201	0.241780303249181	0.638844223996789
Merged-chr11-85492594-6	chr11	85492214	85493214	+	893.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 14 of 25)	intron (NM_138681, intron 14 of 25)	139550.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	4.21407354231832	4.30035798695578	4.22299949730264	3.94532658530679	3.87529634753393	3.67604349964815	-1.19657185464322	0.0189687813945789	0.155948459863662
Merged-chr11-98401002-2	chr11	98400502	98401502	+	760.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033537)	promoter-TSS (NM_001033537)	-512.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	4.26698593924853	4.43888693120809	4.51292445000906	4.14398796381503	4.14158294307748	4.24065327584097	-0.629154993515352	0.168793020536688	0.545438812408496
Merged-chr12-108758764-2	chr12	108758264	108759264	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34547.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	3.6150899417602	3.59141861039889	3.65281000514297	3.57308106598531	3.32926323913971	3.27232227176485	-0.806275374407584	0.174109885126866	0.553317761609134
Merged-chr16-36598513-4	chr16	36597999	36598999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36365.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	5.08350372536147	5.00833290193058	4.71213242604531	5.36915969573819	5.59431395726903	5.10308534217906	0.874114077817081	0.0256141774650638	0.189689924516129
Merged-chr9-90059522-3	chr9	90059024	90060024	+	748.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	RMER15|LTR|ERVL	5257.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	6.63492732281091	6.67431358662501	6.55204452265588	7.12565831397559	6.92505227056658	7.17281799135725	0.692362790051354	0.0062229645063034	0.0716381337355414
Merged-chr16-94066384-1	chr16	94065884	94066884	+	543.0	f0_balb.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18876.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	2.9795742418597	2.69027592184052	2.73993143990763	2.79453238119762	2.97489722124712	2.99805784999547	0.552053597431777	0.450278488833753	0.808244958990181
Merged-chr8-115582275-4	chr8	115581755	115582755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	124639.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.91409000471634	5.92513030920983	6.20552039806206	5.5769178793958	5.77717333471157	5.72818738401823	-0.557963055285682	0.0747100241969194	0.359770339335452
Merged-chr2-44927172-4	chr2	44926691	44927691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-65569.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	8.38285300105485	8.24808069574561	7.97254629048354	8.25786122927458	8.13057257463189	7.80390904088879	-0.188542409461144	0.443170752581565	0.803662801744639
Merged-chr14-79034722-3	chr14	79034204	79035204	+	961.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 20 of 44)	intron (NM_027906, intron 20 of 44)	164486.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	3.8340262234178	3.94432111415022	3.87878636050044	3.36652701293188	3.32267865642771	3.35515555670045	-1.99779689008267	0.000706576476689186	0.0137655854536066
Merged-chr1-181861072-7	chr1	181860576	181861576	+	907.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18675.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	5.65815953293919	5.47472273425385	5.96935837191678	6.2372810799831	6.34219743507552	6.39084558759898	1.07994274238847	0.000497009382910817	0.0104514737754673
Merged-chr11-83066878-4	chr11	83066371	83067371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	1759.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	6.94952712574725	6.73301718722633	7.01214065053276	7.19756642669985	7.18949517770904	7.14651126347306	0.427829502906481	0.0800054714492592	0.374111234761161
Merged-chr12-98703813-3	chr12	98703319	98704319	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146199, intron 8 of 18)	intron (NM_001146199, intron 8 of 18)	30826.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	3.83072340889109	3.3880785297899	3.97889210654331	3.46886616883935	3.34582822879857	3.45113632261082	-1.17145974565724	0.056318876076149	0.30592642907326
Merged-chr7-80343541-2	chr7	80343041	80344041	+	868.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026812, exon 2 of 4)	exon (NM_026812, exon 2 of 4)	404.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	5.20498506712989	5.35930128524259	5.00235103415184	4.89015474090138	4.73306718415911	4.57733122093023	-0.998421559602566	0.0116790243712158	0.112163926578962
Merged-chr2-167650340-3	chr2	167649862	167650862	+	770.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11182.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	5.42676654730399	5.36931934507242	5.37216786233818	5.13265175147299	5.24956503406471	5.14521955797882	-0.417997617776542	0.22413198279187	0.618970262998538
Merged-chr6-89257651-3	chr6	89257125	89258125	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	28100.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	7.90819758181794	8.05541462474624	7.77244427047328	7.6098609015927	7.9466270488944	7.82884510003373	-0.166232513052197	0.476663263309856	0.822730601009926
Merged-chr4-53119579-2	chr4	53119079	53120079	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	40316.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.153317185587	6.69899895732169	6.71467309681124	6.89684724716067	7.11686518381737	6.61974397963018	0.0384256373144838	0.895832202923544	0.975665889379756
Merged-chr1-151001565-3	chr1	151001081	151002081	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8146.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.85254424076196	3.87557111964786	3.96596611632642	3.97349558802931	4.07109054491327	3.83260518471143	0.229867872033225	0.64950055451446	0.902169249503915
Merged-chr8-71526691-1	chr8	71526191	71527191	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	10746.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	2.70356450175435	2.55680181442341	2.6477928880819	3.07153179095576	2.91774061204714	3.15045816391897	2.18202494521541	0.00465266499405945	0.0582646035140958
Merged-chr12-84174041-2	chr12	84173541	84174541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	19974.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	7.46900250113048	7.20712402729267	7.18151848095779	7.01629547377361	7.13451672285793	6.96226840485754	-0.378150792533794	0.125083557311087	0.473260156105768
Merged-chr7-97331254-3	chr7	97330732	97331732	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	3.07020748723639	3.10705991318291	3.31635558986832	3.1002394421991	3.06734722631118	3.16621393499956	-0.233406628707671	0.718008826080123	0.927249469209724
Merged-chr3-115729364-4	chr3	115728877	115729877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14322.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.55515667816777	4.25692815582418	3.66674491388946	4.01955333895763	3.91924387519599	3.86123536073574	-0.801437931774381	0.166760937530177	0.542370581716491
Merged-chr16-75929721-4	chr16	75929209	75930209	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20443.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	2.88516430646042	2.89604510162778	2.95349582285835	2.77205481301445	2.83635554779169	3.02525921807816	-0.161360761836972	0.817115144844967	0.956754861188725
Merged-chr7-97358229-1	chr7	97357729	97358729	+	564.0	f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13388.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	3.8695018734855	3.98015562164446	3.93882993524275	3.77537823064843	3.75816144023694	4.43109698451876	0.259249541785347	0.64225670959876	0.899390704863657
Merged-chr19-29945075-2	chr19	29944575	29945575	+	715.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164724)	promoter-TSS (NM_001164724)	-715.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	2.68199007793086	2.73754894022528	2.58506805233888	2.71412481673233	2.73613990622325	3.1359875633814	1.01438411982491	0.187667740240784	0.57285510583496
Merged-chr19-53333887-2	chr19	53333387	53334387	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	3479.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	3.36424822118844	3.17606721148621	3.16817787933859	3.08497506984036	3.29078399233621	3.29733451427333	-0.0572052290047278	0.928489857253048	0.983810947287576
Merged-chr18-66463170-2	chr18	66462670	66463670	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	4566.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	2.62627894502082	2.7164574327684	2.88025413112484	2.7385613768932	2.68952378187196	2.77378392231101	-0.0412873013543465	0.955094637003919	0.989721943182288
Merged-chr9-64704193-2	chr9	64703693	64704693	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33563.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	7.00282562357646	7.28498206185	6.71793112932484	6.94876483134083	6.87312996776532	6.67545249989074	-0.292951121246319	0.293864768746784	0.690438710263513
Merged-chr14-79533049-2	chr14	79532549	79533549	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17375.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	7.03708577201117	6.90988137004462	6.86578921346579	6.94178414465665	7.38365630051055	6.98188718022767	0.283477920124528	0.287071476669588	0.684323804399215
Merged-chr1-172277326-4	chr1	172276825	172277825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178405, intron 20 of 22)	intron (NM_178405, intron 20 of 22)	-18901.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	5.67630156772629	5.49415008493414	5.42107081761486	5.07850848747354	5.31817857911574	4.92866633026569	-0.800050200386225	0.0290277102472916	0.204545276175912
Merged-chr8-13784728-2	chr8	13784228	13785228	+	760.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025924)	promoter-TSS (NM_025924)	-887.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	3.8320005255419	3.71388178521454	3.76307614215977	3.52598591541956	3.56498077795022	3.51166508774038	-0.81193935919235	0.141087019109645	0.501841092894255
Merged-chr7-121080888-4	chr7	121080366	121081366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-2572.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	6.29046706839119	6.11805421976692	6.43611703995467	6.28002875702536	6.38486222082815	6.28926002442625	0.0709659461164929	0.80042674941613	0.952530841455605
Merged-chr2-160091276-4	chr2	160090774	160091774	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74621.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.73551118341975	4.44692789944758	4.82310433972043	4.49945039768242	4.52027654591193	4.62746344121518	-0.30155823422512	0.479899321874973	0.824391932626821
Merged-chr2-14244358-3	chr2	14243864	14244864	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 3 of 29)	ID4|SINE|ID	14950.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.31379232359323	5.54097479441099	5.69231687517293	5.69450026545492	5.67787401536239	5.89820908252259	0.441364923429478	0.181852969615274	0.56447814829156
Merged-chr1-161250787-2	chr1	161250293	161251293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303408, intron 1 of 5)	intron (NM_001303408, intron 1 of 5)	417.0	NM_007453	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	5.26537412566519	5.26667192243384	4.98864958887498	5.49341128384302	5.30572243309541	4.80943837090545	0.116704678622956	0.77126674309406	0.943589735529798
Merged-chr5-88637839-2	chr5	88637339	88638339	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 12 of 13)	MTD|LTR|ERVL-MaLR	37741.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	2.65598840352629	2.39444930651602	2.78455134818781	2.78976393323486	2.53315533045722	2.97354065508785	0.824934333528224	0.311928139338955	0.706795039274351
Merged-chr13-8885765-4	chr13	8885228	8886228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145360, exon 1 of 5)	5' UTR (NM_145360, exon 1 of 5)	122.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	7.12762573006913	7.51413939963951	7.26991648132521	7.30396855479348	7.6381189325604	7.42691233884556	0.223099945424062	0.381158420671283	0.763032822617589
Merged-chr14-101448007-2	chr14	101447507	101448507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 17 of 18)	intron (NM_001081278, intron 17 of 18)	161184.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	2.84734615337207	2.77014556159199	2.59319209117685	2.71883240463465	2.76484990312819	2.91873275625675	0.281705292010373	0.705939713712017	0.922834459892351
Merged-chr7-19714367-2	chr7	19713867	19714867	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 1 of 8)	intron (NM_001109748, intron 1 of 8)	1062.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	3.96554342177672	4.03951618937516	4.14630231715591	3.94727711008482	3.75935087007599	4.078552597151	-0.371739137277961	0.46221602250096	0.815159087955196
Merged-chr1-162738606-3	chr1	162738112	162739112	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	MIRb|SINE|MIR	1944.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	4.28863771677666	4.26019357786878	3.85751613415232	4.23147214760144	4.37180775435626	4.33094944106652	0.412092077318981	0.402414124544364	0.778019718782707
Merged-chr3-108134861-4	chr3	108134335	108135335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	11317.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	3.33087566150657	3.60721965124606	3.59654052341101	3.5666046760778	3.36957209985827	3.50734426231064	-0.130317292401618	0.824812037130423	0.958596193929081
Merged-chr8-122987590-2	chr8	122987090	122988090	+	742.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	54694.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.0898625859761	3.79363815409433	3.90311593408863	4.08464495309173	3.70976658111804	3.87109397805507	-0.126671144986266	0.811660847152957	0.955304895434479
Merged-chr16-95708836-4	chr16	95708347	95709347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	6440.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.4195178895398	8.68346549368483	8.12846706443324	8.0851082621765	8.31453090460206	7.95907052347224	-0.42412825575021	0.0894753501750873	0.397430466949696
Merged-chr8-90841332-1	chr8	90840832	90841832	+	675.0	f0_balb.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12497.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.32331830287203	5.42173208839767	5.60881350181687	5.38201445456309	5.57752924635262	5.81849723776709	0.282841705097477	0.411128987037818	0.783860060341936
Merged-chr2-163777073-3	chr2	163776573	163777573	+	918.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-26834.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	2.89437160251335	3.07824157804769	2.9880454555556	2.64514332817815	2.64576711834111	2.94340746078006	-1.26284416857011	0.090923155042438	0.401312003223593
Merged-chr14-122983849-2	chr14	122983349	122984349	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	-566.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	6.23114025873297	6.68786594693211	6.47532541120535	6.47973879410086	6.47841550274198	6.00697038150158	-0.209629252029675	0.501124292208371	0.835440646332086
Merged-chr2-76677065-1	chr2	76676565	76677565	+	671.333313	f0_balb.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1750.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	3.75004488876628	3.80031942060524	3.7829345055752	3.79215900011069	3.71221295638298	4.04330059804975	0.222671519849079	0.673753304876397	0.91163657550036
Merged-chr12-85465094-4	chr12	85464594	85465594	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8796.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.21628426442486	3.07763837357397	3.02904979833961	3.22053676143383	2.99017174406251	3.27735958061905	0.214510123198386	0.745389036989508	0.936169170413447
Merged-chr9-45086398-3	chr9	45085898	45086898	+	994.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	7215.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	4.38640097331933	4.70648145620747	4.38456259444641	3.58415639672443	3.3003354209266	3.77604167423139	-3.24219807350334	1.24116001943323e-07	8.67852461319329e-06
Merged-chr2-90486521-4	chr2	90485977	90486977	+	854.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-7303.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.63552268389073	5.52975374827532	5.65175984046898	5.9518771114682	5.88825928525436	5.96274370108218	0.59430377676212	0.0507949960107652	0.287032259970374
Merged-chr2-24335494-4	chr2	24334983	24335983	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	4.06844809093323	4.29644083387752	4.24367632993471	4.00910014820892	4.0645918239594	4.47538132920247	-0.0465098510742668	0.924909156773376	0.983070278897208
Merged-chr14-67945536-4	chr14	67945016	67946016	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11944.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	3.87406777361939	3.92509412090051	3.67524390809664	3.82739684023195	3.62715846737314	3.95095607300173	-0.113033467865711	0.834080994662737	0.961209525973948
Merged-chr16-57335822-2	chr16	57335322	57336322	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	RCHARR1|DNA|hAT-Charlie	-17455.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.88872951470314	4.05709748065448	3.53922036421656	3.86723035634804	3.79006918438331	4.08431746561913	0.182356161262459	0.745796402472141	0.936251303305737
Merged-chr11-75623098-2	chr11	75622593	75623593	+	697.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-7927.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	3.91863746220711	4.16220121277009	4.07610449025553	3.81524814420623	3.95502107182242	3.79542932552547	-0.585150530254652	0.25289817886689	0.650282808008534
Merged-chr8-69038526-4	chr8	69038013	69039013	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50223.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.23064227126899	5.57153383323799	5.79895651028693	5.39917247717127	5.6847157226891	5.66266785435656	0.0842660682871161	0.8134484975827	0.955940138311315
Merged-chr15-79721022-3	chr15	79720539	79721539	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013818, exon 12 of 12)	3' UTR (NM_013818, exon 12 of 12)	21497.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	4.61367551657376	4.41354181996274	4.50098843749426	4.55698020504965	4.48394343852015	4.52580628351173	0.0212822729470571	0.959948138658705	0.990334145750493
Merged-chr10-53344887-4	chr10	53344356	53345356	+	837.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	7170.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	6.46249077062079	6.88681026453997	6.48407280644194	6.93929736022622	7.31262105222816	6.54416390417656	0.541965225971456	0.0892266427911011	0.396807632200643
Merged-chr1-65107815-4	chr1	65107318	65108318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285881, exon 8 of 8)	3' UTR (NM_001285881, exon 8 of 8)	-4455.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	6.37097991566862	6.67205454053935	6.47236124928025	6.63874163888351	6.54745087958003	6.38080591268533	0.0275383925854539	0.920289063403624	0.982323255407855
Merged-chr6-31400330-2	chr6	31399830	31400830	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	1502.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	4.85277826814615	4.70546638293764	4.71870896731879	4.83548671683681	4.8982366678114	4.38525491917698	-0.0512914808182581	0.904993872967435	0.978186201733838
Merged-chr4-149445472-4	chr4	149444979	149445979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9489.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	5.3553651205157	5.69550306861144	5.70529914372799	5.33383118141787	5.28928461683542	5.41232314844614	-0.481277659116089	0.160344525821796	0.532965919658045
Merged-chr16-4370250-4	chr16	4369787	4370787	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	50211.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	5.19885547644346	5.05033700984354	4.86835315695557	4.69878463583235	4.75119724604854	4.56072123650865	-0.834029526435225	0.0369785696306148	0.237105095308946
Merged-chr5-4191636-2	chr5	4191136	4192136	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042670)	promoter-TSS (NM_001042670)	-731.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	3.0532726197768	3.17330675372018	3.04709400722727	3.27311502476647	3.15114935239398	3.23775577937204	0.535383840003768	0.403637336108877	0.778946945820614
Merged-chr2-153216070-2	chr2	153215570	153216570	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9371.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	4.75955365230344	4.57001022201961	4.3518487592389	4.21703372401338	4.04049714869575	4.18375902283245	-1.15154155027004	0.0129955869136719	0.120895413806433
Merged-chr3-69699534-4	chr3	69699033	69700033	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22522.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	6.5792564686807	6.27118498399338	6.21947372847757	6.63397480765523	6.62663124276365	6.5155135060536	0.358116790838571	0.198153142627981	0.586428434481221
Merged-chr4-147343717-2	chr4	147343217	147344217	+	708.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	167851.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	2.84083838661856	3.2946628139916	3.04969626582293	2.81672586270696	3.06650220528074	3.00270116288252	-0.497075592576127	0.491861248166323	0.830781534568001
Merged-chr14-103098223-2	chr14	103097723	103098723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	781.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	5.57304519476774	5.73579659833505	5.29479270335838	5.79561525361357	5.97389799893264	5.72539628406615	0.514296997961334	0.124681430337335	0.472306664538883
Merged-chr9-64830225-4	chr9	64829742	64830742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	19231.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	6.65302362348077	6.54042445162622	6.3368868953806	6.5926085324232	6.78510771982419	6.39652843516649	0.141299635661045	0.615701239762445	0.888073730124794
Merged-chr14-52106924-4	chr14	52106421	52107421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2900.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	7.07476954060128	7.3436371426753	7.20672466682285	7.24073449344937	7.27975750125272	6.85591227692727	-0.0968908825258788	0.709660644475273	0.92401439884764
Merged-chr5-135446150-4	chr5	135445649	135446649	+	939.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 8 of 30)	L1MC3|LINE|L1	-51603.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	5.69505388134786	5.57307761520856	5.47709688441944	5.27182295076162	5.4255267077464	5.11209370809312	-0.580288284711836	0.093380622088616	0.407088157154892
Merged-chr19-40629734-2	chr19	40629234	40630234	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	17368.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.18436551590449	7.37421326978982	7.03825904953939	6.9070616764333	7.05400986937412	6.88400245361203	-0.389603154370821	0.120003507323202	0.463202293331586
Merged-chr5-92511450-4	chr5	92510932	92511932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-5775.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.15771020147065	3.75542280586883	4.52550924108445	4.42987960847016	4.36408574488285	4.59108068897246	0.75478444370305	0.148598175873982	0.514324100530861
Merged-chr12-76534508-6	chr12	76534020	76535020	+	850.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	960.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	6.69592620430273	6.91449570405946	7.03835442918614	7.01178490194145	7.18834696310697	7.17040916012083	0.369271039683578	0.144095766084802	0.506710013959755
Merged-chr5-90655040-4	chr5	90654549	90655549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14522.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.23505581162648	4.61766548396228	4.87876139960995	4.38679388233546	4.45105456231322	4.59580366806212	-1.08536089911043	0.0145400842715718	0.129870835972437
Merged-chr18-4921515-4	chr18	4921021	4922021	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.99851244194791	6.65513128979801	6.61042188281765	5.93046795099319	5.91839692028872	6.19008124300407	-0.73735393660665	0.025397188200172	0.188870249911086
Merged-chr5-45858490-2	chr5	45857990	45858990	+	612.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-950.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	3.23246125212427	3.35782390708657	3.42300180033891	3.11553397873962	3.23615181398575	3.27491168586305	-0.519712232128286	0.403566772565136	0.778882003719199
Merged-chr7-14534128-4	chr7	14533643	14534643	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28028.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	4.82145221027727	4.873756247963	4.83242653046418	5.02587579078665	4.5569082280077	4.66005342544107	-0.182891159430594	0.658612482116292	0.905014667687917
Merged-chr14-100211287-4	chr14	100210807	100211807	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61511.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.6870812835293	3.28117264452084	3.49617132130615	3.60822286050066	3.27311710868533	3.67225196263744	0.0864243255718435	0.889133929524172	0.974207858658472
Merged-chr5-99338856-2	chr5	99338356	99339356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-85929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.78964904574695	8.08076999189416	7.67695497175808	7.76592614318173	8.16423108546186	7.8392178623493	0.106539484744839	0.670818076060377	0.910175626534126
Merged-chr3-88404583-2	chr3	88404083	88405083	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	5814.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	4.74499890172555	4.70094908707462	4.7701220345092	4.85976082924726	4.74519091310371	5.08017924506857	0.349897865480599	0.377844516764537	0.760218641134828
Merged-chr16-92870390-4	chr16	92869904	92870904	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44330.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.67308147473357	4.28028713754101	4.48776923829886	4.26946561491465	4.41027634420672	4.85255062330752	0.0846962948467949	0.858173779245688	0.966839848129809
Merged-chr13-54565422-4	chr13	54564941	54565941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-59.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	6.09941798119548	5.98804319735691	6.37199366210774	5.96375285387374	5.94960131039447	5.81308321196761	-0.409630219580836	0.177835160169878	0.55892688546374
Merged-chr6-115480122-2	chr6	115479625	115480625	+	784.0	f0_balb.idr|f0_c57.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58059.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	7.26618329880412	7.3967816797745	7.41912224395903	7.20271155595895	7.33827829064741	7.25691961782361	-0.134681108723859	0.559479643662184	0.864958249988122
Merged-chr19-4037957-4	chr19	4037462	4038462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013541)	promoter-TSS (NM_013541)	-50.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	5.45386612830856	5.44335864900406	6.01718795969974	5.66924063433679	5.55358370233971	5.78846572484321	0.0293593688897732	0.934127904143071	0.985707838096286
Merged-chr11-75756327-3	chr11	75755803	75756803	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 3 of 5)	intron (NM_009536, intron 3 of 5)	23416.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	4.73037130460588	4.93470169698672	4.94806102979168	4.64248204852324	4.51964259988913	4.7599985430611	-0.548910344392656	0.1746990160145	0.55412479413466
Merged-chr3-18339319-4	chr3	18338818	18339818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-95980.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	2.9304780590298	3.04341548644509	3.38440036414715	3.01831681694536	2.92561369217665	3.24564441655751	-0.27323438052161	0.693893822199847	0.919065250351864
Merged-chr14-9694955-3	chr14	9694456	9695456	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-189139.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.19728313181976	2.25972361790135	2.36851002551111	2.10345273168946	2.15802098468693	2.18576422777786	-0.907489344314195	0.302906844768863	1
Merged-chr6-87130853-4	chr6	87130371	87131371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	26125.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	4.89339299450291	4.86202352773595	4.83996765710964	5.49777497098159	5.33227769819715	4.98568495414973	0.904425656025733	0.0177279223876306	0.149104327551288
Merged-chr2-44924962-2	chr2	44924462	44925462	+	862.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-63340.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	5.18580016083555	5.09395843011322	5.39442655210426	5.24251373237025	5.53878333405884	5.48563446569409	0.417333525945409	0.238373489634926	0.635072404122148
Merged-chr10-79555084-4	chr10	79554588	79555588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027422)	promoter-TSS (NM_027422)	40.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	4.46510169927484	4.27823702025887	4.45723453337433	4.45020837557605	4.01270888886241	4.64080990690721	-0.0459196563387395	0.924777779288526	0.983070278897208
Merged-chr1-136626226-2	chr1	136625726	136626726	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	1325.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.9524387253844	6.17467837576951	6.25513488453535	6.2177240823571	6.28776508083237	6.17225792646034	0.173988221159621	0.544367765923309	0.85765692399006
Merged-chr12-111908144-4	chr12	111907675	111908675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011625)	promoter-TSS (NM_011625)	-120.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	6.20266577418113	5.8845690654714	5.94118859679985	6.32410012715488	5.47063427629718	5.88082675484832	-0.138230781155772	0.70656666453765	0.923001162707983
Merged-chr7-80427139-2	chr7	80426654	80427654	+	680.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-21718.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	7.183732018001	7.35336717418615	7.30809375882432	7.2866790371265	7.47644453700192	7.35426512647618	0.141360801355098	0.544188923159027	0.857624756964588
Merged-chr14-120480715-3	chr14	120480269	120481269	+	874.6889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	2308.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	3.36680547272481	3.33443090218683	3.74137902344105	3.23817095217822	3.35477367806793	3.23477921483551	-0.790597645064656	0.209437177510947	0.60098798725147
Merged-chr10-121591243-4	chr10	121590741	121591741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	MTD|LTR|ERVL-MaLR	-4447.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.54993059775641	5.30342059278514	5.7222153340437	6.96643100195088	7.27029404834419	6.67589118971138	2.47816505859373	3.698048344568e-15	1.03955137383383e-12
Merged-chr17-5623848-2	chr17	5623348	5624348	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	131248.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.67335712376619	3.34396896273176	3.43740197542698	3.40205132901849	3.3676966404339	3.33729018935743	-0.472506629718834	0.432582655565432	0.797386699146392
Merged-chr11-63132973-4	chr11	63132467	63133467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302260, exon 1 of 5)	5' UTR (NM_001302260, exon 1 of 5)	164.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	6.20549349749397	6.08425256162572	6.00919304730423	6.42575377828504	6.42248848482717	6.3870674435898	0.507799502146991	0.0656695354179616	0.334332867168387
Merged-chr9-7222242-2	chr9	7221742	7222742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37737.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	8.03163896216175	8.23473116141489	7.96453004705616	7.59366473880746	7.92809281418622	7.88098284828909	-0.39154870906376	0.0929566264512166	0.406223489865496
Merged-chr4-149155917-4	chr4	149155452	149156452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 8 of 12)	intron (NM_001081274, intron 8 of 12)	10130.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	4.91228624451938	4.77933848266656	4.82233519000219	4.83328437092066	4.94176158419521	5.13092240496433	0.282212815021592	0.464531347100707	0.816459397744841
Merged-chr18-64956286-4	chr18	64955978	64956978	+	777.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-67049.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.28536131728496	3.12840286735012	3.21113377996501	4.30328225077252	3.69587336753643	3.65848856745651	2.64577890855203	6.91879615457752e-05	0.00206788502309658
Merged-chr13-44679421-1	chr13	44678921	44679921	+	703.666687	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-51353.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.43705972889642	2.50002162367211	2.7410814553278	2.34656330028027	2.4216434505081	2.57497371895802	-0.67850395082835	0.405912590677145	1
Merged-chr8-111257329-2	chr8	111256829	111257829	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	1873.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	3.95765191163586	3.91924078651722	3.77724520841286	3.67473634157116	3.70814838628621	3.7954167832809	-0.543570035486945	0.300100867506896	0.696846374491091
Merged-chr11-94992049-4	chr11	94991587	94992587	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172261, exon 1 of 10)	exon (NM_172261, exon 1 of 10)	875.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	5.87683569871333	6.17656940184113	6.59650197611525	5.73551463805124	5.73033339351394	6.15672990554945	-0.620235550021549	0.0764831332474542	0.364240416166104
Merged-chr14-106155408-4	chr14	106154926	106155926	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49228.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	3.10842262252586	3.12898157106024	2.88017555742162	3.09910313448961	2.88846879420076	3.0782732768399	-0.125478778879094	0.855191827587751	0.966112719615049
Merged-chr9-114748546-4	chr9	114748012	114749012	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	17309.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	5.25617888220826	4.72479825850759	5.107837546528	6.15005228808258	5.84272306227115	5.82886172468244	1.72432338045387	3.26707526163277e-06	0.00015289471224406
Merged-chr7-126725853-4	chr7	126725352	126726352	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-21036.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.43311481532448	4.46823425788807	4.38039057852533	4.1777885379755	4.23971228883767	4.68106805108001	-0.14551846674991	0.754625576481096	0.939008487312488
Merged-chr4-150609556-2	chr4	150609056	150610056	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	B4|SINE|B4	42618.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.39847099426731	3.75149869603974	3.83010417264788	3.31915566783898	3.40484226006603	3.6051028898543	-0.810699194951543	0.178749289657791	0.560054633198232
Merged-chr2-102944238-4	chr2	102943727	102944727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42562.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.55200068383989	7.59930053131296	7.24218491629324	7.26442130676004	7.358205008458	7.18880506925055	-0.302995805891698	0.211687495211885	0.604070547741367
Merged-chr2-117352471-4	chr2	117351977	117352977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9600.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	7.74548830923979	7.87524546742971	7.26186524096547	7.66149444964997	8.13801261311523	7.33171398759413	0.149046348740535	0.629199010293023	0.894111604640856
Merged-chr1-78896724-1	chr1	78896224	78897224	+	671.0	f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	MLT1B|LTR|ERVL-MaLR	79813.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	3.82571981405502	3.70729704057158	4.24315961270986	3.53937469674365	3.8527879408758	3.93018633457897	-0.496452151515667	0.387394376871714	0.767629817840103
Merged-chr10-121297559-4	chr10	121297036	121298036	+	909.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361015, intron 6 of 12)	intron (NM_001361015, intron 6 of 12)	13860.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.10242557294523	2.6285551711395	3.07803718279204	2.6187617629466	2.68026992807538	2.92178277600393	-1.04777104301359	0.182506778894207	0.565355871271703
Merged-chr6-108784321-6	chr6	108783820	108784820	+	981.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1261.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	5.63032195195911	5.09602433262426	5.48356897619779	5.64373408244573	5.61535563778578	5.48806507297979	0.316950153456912	0.374191965994609	0.757933699438553
Merged-chr12-106658445-4	chr12	106657952	106658952	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57872.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	3.4195298461231	3.46708582616634	3.65750431540241	3.04997694990524	2.82502766652663	3.13750202385028	-2.33851823141305	0.000959867788386462	0.0174538196975657
Merged-chr5-73630389-4	chr5	73629897	73630897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153568, intron 1 of 4)	intron (NM_153568, intron 1 of 4)	2024.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	3.78552139364111	3.5047466510577	3.6871511104544	3.40788865158014	3.30551269822821	3.6028332794326	-0.828466045825051	0.159117068304118	0.531158781765317
Merged-chr9-57467004-2	chr9	57466504	57467504	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1056.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	5.21259655346475	5.20845966014681	5.64852372035951	5.44613835005572	5.49187248643601	5.68483743889774	0.349275103547056	0.325200802867633	0.718039230595993
Merged-chr6-129231810-3	chr6	129231360	129232360	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040265)	TTS (NR_040265)	6185.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	6.31610452174299	6.31510126551371	6.64819449950996	6.68156673059672	6.66232821143445	6.82658342273711	0.47426355056292	0.081250218982683	0.377143156371253
Merged-chr3-81134949-4	chr3	81134449	81135449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 2 of 6)	intron (NM_001357746, intron 2 of 6)	98533.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.460166953504	4.05177120681077	4.11629082147749	4.11501673485559	3.87377843624151	4.23126170292618	-0.432550139394681	0.392926938834724	0.77140987486869
Merged-chr14-51883751-4	chr14	51883253	51884253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1089.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	5.81931832769389	5.87976038767225	5.51427063283583	6.01449257629231	6.14765164016921	5.72637096816527	0.401551226189141	0.219867911665983	0.61423936831415
Merged-chr5-137883112-4	chr5	137882617	137883617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11359.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	6.18855701028617	6.20335247661804	6.01454148413132	6.15347211479412	6.30668507672485	6.40400276065448	0.241315329089746	0.395974875700917	0.773231268695054
Merged-chr1-51498147-4	chr1	51497648	51498648	+	914.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19749.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.24621592553977	4.85243656565448	4.99655889347408	4.73403196154876	4.75139918319537	4.78158888095976	0.0516555825148955	0.910418934903494	0.97984424692051
Merged-chr11-69417208-2	chr11	69416708	69417708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3533.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.05743359383619	5.60113126939053	5.92132332508019	6.53157318484991	6.26242663739516	6.00743384692532	0.713995478759008	0.0291659234166996	0.205125361816984
Merged-chr19-11951793-2	chr19	11951300	11952300	+	659.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14044.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.09632206216879	3.26090048376841	3.20108860728596	3.52303925962935	3.60792138348898	3.39002374007612	1.32932809047068	0.0321844340901624	0.217883198419513
Merged-chr6-114916500-4	chr6	114915990	114916990	+	887.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5331.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.24367401348061	5.0774717247098	5.37519409755984	5.54384645371124	5.3035300380752	5.18345974663783	0.2532632638397	0.481359321149092	0.825051423272229
Merged-chr5-86803491-2	chr5	86802991	86803991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-775.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	4.72027782309074	4.36619890192012	4.89027523656642	5.09483349616526	4.74827473156367	4.80878431121989	0.51359298764987	0.234928389654677	0.631024470284135
Merged-chr8-57531184-4	chr8	57530682	57531682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 11 of 11)	intron (NM_001167981, intron 11 of 11)	19339.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	5.98838579384034	6.36916260550544	6.18415928866679	5.91441799687177	5.99781064886797	5.90690509606697	-0.426320323196614	0.156465965120721	0.527093928168621
Merged-chr9-108853081-4	chr9	108852552	108853552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	-991.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	7.91231677059737	7.94137866957613	7.93763886023792	8.2937041294479	8.56121515908934	7.77427490587327	0.465177222953515	0.080607199446099	0.375667293128207
Merged-chr11-114909162-4	chr11	114908658	114909658	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19117.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.72922983488312	7.47545947910273	7.63049240646827	7.79586219330993	7.66993951941821	7.32182889679947	0.00428374414691681	0.986251296416607	0.997033990984076
Merged-chr14-37135381-4	chr14	37134896	37135896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-74.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	8.10301274643615	8.45540513007711	7.94036660001203	8.15566834838322	8.32501411852387	7.91581118260149	-0.0601948735590918	0.812289557591382	0.955551008836946
Merged-chr13-73328494-4	chr13	73327984	73328984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010888)	promoter-TSS (NM_010888)	-2.0	NM_010888	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	7.17623095437903	7.36130405424368	7.43262259785498	7.29494139555603	7.66633651434652	7.1834119197638	0.125119366822569	0.630600888877485	0.894783738152105
Merged-chr5-72820268-3	chr5	72819773	72820773	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	48175.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.77136867689414	5.89928068023095	5.85050391177299	5.31633751448168	5.10486842275186	5.74375469361124	-0.830153614574526	0.0194232313160723	0.158339201660404
Merged-chr19-57622017-4	chr19	57621523	57622523	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 1 of 28)	L1ME1|LINE|L1	10989.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	3.49009099750892	3.78010640671848	3.55733721036018	3.33776438942713	3.28112702499549	3.62763641574815	-0.746000346339903	0.215398257087013	0.608884900801139
Merged-chr14-17773101-3	chr14	17772588	17773588	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	112128.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.33730502010633	2.96691852963055	3.35761237364357	3.26271532648577	3.12910000533091	3.08443197681529	-0.284335553758091	0.670510422684843	0.910029595108128
Merged-chr4-43460860-4	chr4	43460354	43461354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6228.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	5.82074193084114	5.60234293704403	5.93907737914102	5.66237348362527	5.49800304419886	5.99952766337208	-0.117365202639605	0.729025636140131	0.930508277706248
Merged-chr18-64887647-4	chr18	64887159	64888159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-97.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.61494378631083	5.31187442783196	5.58728426376387	5.73518418630536	5.58776904623924	5.67647105186643	0.295964450600631	0.369064609385648	0.753820217432397
Merged-chr11-59563006-4	chr11	59562488	59563488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	MTE2b|LTR|ERVL-MaLR	8750.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	6.96072957422663	6.50429597466754	6.4894701975033	6.30295676295249	6.42668098658543	6.65126940124258	-0.343635551874605	0.247141446833784	0.644145276280485
Merged-chr19-21319792-3	chr19	21319285	21320285	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	47507.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	2.02454439477342	2.03040354130314	2.29526474562816	1.96118482433541	1.89453154349704	2.11436369149491	-1.01769745933308	0.286843584799303	1
Merged-chr5-148488514-2	chr5	148488014	148489014	+	869.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	63159.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.87557880886903	3.84493923723628	3.97740132486509	3.86311880283555	3.58184349633576	3.74865977226764	-0.534763259262279	0.313924214355493	0.708312869876137
Merged-chr2-157204527-10	chr2	157203949	157204949	+	907.7700199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139516)	promoter-TSS (NM_001139516)	85.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	6.3485466588209	6.30774904531615	6.48231752512284	6.50771765837321	6.58458221484153	6.23116206040627	0.138235935215328	0.620151451911566	0.890026802452616
Merged-chr3-88423033-2	chr3	88422533	88423533	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	ID_B1|SINE|B4	2108.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	4.47550335271043	4.44936057034094	4.45577206848963	4.66510339899832	4.85752395271756	5.01405918763507	0.920844911335659	0.0266357108133968	0.194191205236233
Merged-chr18-39587056-1	chr18	39586556	39587556	+	573.0	f0_balb.idr	Intergenic	Intergenic	-99811.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.96279960517338	2.85448344642334	2.96586303416267	2.77669290517642	2.68881882251771	2.79698681294615	-0.905382754552316	0.205418385355971	0.596047563330878
Merged-chr9-47625351-1	chr9	47624851	47625851	+	544.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	94999.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.14134194811304	6.25229479865529	5.91445119679875	6.1642638962341	6.23921053497585	6.51986191410978	0.319289663958313	0.287008693000944	0.684323804399215
Merged-chr7-83610170-3	chr7	83609642	83610642	+	802.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 14 of 22)	RMER15|LTR|ERVL	-21875.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	2.64253226904049	2.57303176224934	2.58181254684949	2.92317120265355	2.91670054643121	2.91169225519608	1.73144608462155	0.0218739482092815	0.171415283725551
Merged-chr1-105170333-4	chr1	105169838	105170838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185669.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	5.69241145249544	5.72782453750104	5.78293527709994	6.07825516741514	6.17527167239435	5.79277036954134	0.539837972637877	0.0798983765773322	0.373776468202941
Merged-chr6-29474619-4	chr6	29474102	29475102	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3165.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	6.7320670357533	7.0406151735693	7.13477540567885	6.93167475596344	7.03803274860879	6.91869079518013	-0.0119650437423521	0.963138025963006	0.991044195440918
Merged-chr9-78671652-4	chr9	78671149	78672149	+	864.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153098, intron 15 of 32)	intron (NM_153098, intron 15 of 32)	56103.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	2.88607491687288	2.8381321933896	2.86145405649665	2.83453285413845	2.78204004557648	2.93389360248497	-0.0733772764783572	0.916279891277309	0.981243905880233
Merged-chr8-11554860-1	chr8	11554360	11555360	+	906.0	f0_c57.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-902.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	6.89643947108391	7.00181950306208	6.87627434473487	6.73211903857185	7.01148203158174	7.06974071371347	0.0246670924167241	0.92279588724971	0.982621045978137
Merged-chr14-52195840-3	chr14	52195328	52196328	+	811.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	1411.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	3.24424446621759	3.25505748465253	3.48532267395435	3.57989562721417	3.68255889724611	3.26850734011448	0.767630266202	0.215687847367509	0.609093989606506
Merged-chr11-98947119-2	chr11	98946619	98947619	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	7408.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.47091059885705	2.96406399276795	3.32172954371511	3.10458455722303	3.02097611690533	2.98042760252157	-1.00048286882167	0.149990997919007	0.516609804764046
Merged-chr2-31689234-4	chr2	31688751	31689751	+	888.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153862)	promoter-TSS (NR_153862)	714.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	7.70011640823978	8.06414326227645	7.61779148836251	7.77190052100239	8.0726555825678	7.69336277643482	0.0683885227815447	0.788676574328664	0.94895503373255
Merged-chr4-147398552-2	chr4	147398052	147399052	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER17D2|LTR|ERVK	-154725.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	2.79465113787128	2.97985531937131	3.04488759422086	3.03968241651946	2.94375166274129	3.22840348625314	0.595415842113166	0.387613136340321	0.767697654208451
Merged-chr16-91447250-2	chr16	91446750	91447750	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17854.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.13352159230122	2.82937307622241	3.12155038846286	2.97940037833276	3.17673326881864	3.35708128420588	0.623918942431361	0.366382773584276	0.751422883941742
Merged-chr11-113101779-4	chr11	113101253	113102253	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100085.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	4.86084972997187	5.39350307413199	5.07705012177439	5.99005881381822	6.12606988957308	6.00395860565279	1.69076437773298	2.42185186481767e-06	0.00011846998822325
Merged-chr5-130257574-2	chr5	130257074	130258074	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 1 of 15)	B1F|SINE|Alu	537.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	4.52687566025211	4.79526675120032	4.86236575732775	4.7667589884194	4.79442594254873	4.96183429639068	0.246513252323748	0.542728387581753	0.857318248006765
Merged-chr2-148527988-4	chr2	148527538	148528538	+	862.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84503.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	4.89982468259685	4.93669303012825	4.80757369126781	4.92950228251176	5.06239685768969	5.02098791310754	0.262022650450731	0.485356448431962	0.827436882501367
Merged-chr10-81183696-2	chr10	81183196	81184196	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007828)	promoter-TSS (NM_007828)	-222.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	5.28289755875186	5.46149580789111	5.26606281734584	5.3596767181301	5.62870395334966	5.59787799976247	0.367452253254619	0.281350131732469	0.679520750186356
Merged-chr17-25823641-4	chr17	25823142	25824142	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173741)	promoter-TSS (NM_173741)	15.0	NM_173741	268933.0	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	5.2211374405068	5.18130139723184	5.27554140711718	5.19446397467301	5.32544966440667	5.42856379036942	0.186184237528994	0.590819143456225	0.877301111216348
Merged-chr14-20794064-4	chr14	20793573	20794573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039138)	promoter-TSS (NM_001039138)	15.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	5.78255581314972	5.30042711554309	5.92236925053512	5.62209194002382	5.36238327386187	5.32925867933647	-0.459177944379219	0.213712675272913	0.60688633382113
Merged-chr5-43868019-5	chr5	43867601	43868601	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	-708.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	8.04253957695705	7.99415155129654	7.80816178831587	8.17635747114057	8.22443359500989	8.02397085313637	0.270558233206343	0.213764127169396	0.606900020244801
Merged-chr17-57288431-2	chr17	57287931	57288931	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	ZP3AR|Satellite|Satellite	9331.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.91081691130454	4.04343660673781	4.57277406862852	4.15584109297701	3.99018653903144	4.56518324508092	0.142977645863304	0.792293809122371	0.949929758256028
Merged-chr8-35135837-3	chr8	35135321	35136321	+	961.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-170131.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.5093603211028	2.53935564997786	2.36709328752054	2.66137678100485	2.69501034000992	2.76797847679135	1.3258652713048	0.100291307365632	1
Merged-chr11-84819556-4	chr11	84819065	84820065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145433)	promoter-TSS (NM_145433)	-50.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	7.85336138128628	8.01931380786147	7.75295048494714	7.71062285367416	7.88596510157783	7.53439732830321	-0.226382083119895	0.335063841933233	0.725339338581532
Merged-chr5-138997275-2	chr5	138996775	138997775	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2322.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	4.91538582625651	4.50506580952035	4.24433992267513	4.77737895112853	4.35944756929884	4.50527804563588	-0.0880910158469408	0.85519460103892	0.966112719615049
Merged-chr17-28485486-5	chr17	28484873	28485873	+	743.090027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 1 of 10)	RSINE1|SINE|B4	776.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	5.17650750375239	5.36773743419649	5.38967080469307	5.16293285742161	5.0562183869172	5.10393906862081	-0.418821495560031	0.237057136722794	0.633453943470732
Merged-chr10-62782071-4	chr10	62781563	62782563	+	733.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026201, intron 5 of 24)	B2_Mm1a|SINE|B2	10305.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	2.93666391407917	3.01181153925011	3.24232408295153	3.02962035526715	3.09286575465351	2.96826609785011	-0.131155395198138	0.845987155911469	0.963945177091542
Merged-chr18-24244449-2	chr18	24243949	24244949	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 3 of 12)	intron (NM_001361200, intron 3 of 12)	38455.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	3.9661388028994	4.24846436014642	4.45816754794018	4.11935491019511	3.85790722394712	4.56097920021982	-0.0838992534026527	0.875992294562584	0.971162730906517
Merged-chr2-101629034-4	chr2	101628532	101629532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026592)	promoter-TSS (NM_026592)	-46.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	5.23309655132757	5.45907405789035	5.41234006243331	5.28115824648724	5.28422770430439	5.47480563169519	-0.0551073364086635	0.872771607265576	0.970280669722388
Merged-chr2-58183861-4	chr2	58183351	58184351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19877.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	4.29367947957226	4.52262955499377	4.81199875305437	4.15827351571854	4.02629804642497	4.43394078128663	-0.903088549719263	0.0621392299719628	0.323850886166195
Merged-chr15-8342067-3	chr15	8341539	8342539	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	102424.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	4.07590902184077	4.15630553594504	4.08922987109049	4.27488999525533	4.47839205857481	4.38777445285529	0.753242420355756	0.101167912090883	0.424204614205772
Merged-chr17-5604807-2	chr17	5604307	5605307	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112207.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.16150572276763	5.83823654187846	5.85375972493497	5.70785058310693	5.59313744501768	5.73675401029805	-0.51946297961765	0.0995127186475719	0.420689072404469
Merged-chr2-155133511-4	chr2	155133016	155134016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008395)	promoter-TSS (NM_008395)	35.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	7.7605890033858	7.52657539913727	7.53865342799091	7.83086305429097	7.54823572609343	7.45096777291968	0.0112407430394919	0.963001764392116	0.991018409557203
Merged-chr5-110286327-4	chr5	110285878	110286878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008993)	promoter-TSS (NM_008993)	59.0	NM_011132	18973.0	Mm.35061	NM_011132	ENSMUSG00000007080	Pole	-	polymerase (DNA directed), epsilon	protein-coding	4.38759301470595	4.07062593603704	4.32934660278243	4.63680353453	4.38687699557714	4.10901525590253	0.350318009651389	0.469411615730982	0.818977178978635
Merged-chr19-23142881-4	chr19	23142399	23143399	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	1673.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	5.15778496741527	5.20587032931465	4.73802123088869	5.55031861376039	4.97153851260607	5.04807424716016	0.324290788925956	0.439421825673158	0.801126452029189
Merged-chr5-148559648-4	chr5	148559147	148560147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6859.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.7318519091134	5.16738957922707	5.53676959083492	6.0622371359737	6.11933103929725	6.03244411751029	1.03268595794034	0.00223886909431719	0.0336388262188415
Merged-chr14-45038200-4	chr14	45037679	45038679	+	982.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	50068.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.76168658622003	4.64776402363263	4.72889435731586	4.80891745976756	4.79693889366732	5.14090531190572	0.457265859412239	0.254344891238988	0.651334544328546
Merged-chr9-70943589-3	chr9	70943079	70944079	+	851.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	MTE2a|LTR|ERVL-MaLR	8642.0	NM_001324472	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.84079037546547	5.69641750188276	5.93649332908575	5.42481372428712	5.17280188300163	5.60825576831493	-0.795013755835228	0.0188695694909429	0.155439970122005
Merged-chr3-98084023-7	chr3	98083508	98084508	+	967.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	70470.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.45036234359562	6.36687407709122	6.54236900670954	6.49979548557614	6.79243577230244	6.19057948808637	0.132825959011374	0.655166504655527	0.904167065613807
Merged-chr5-113627795-2	chr5	113627295	113628295	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	15808.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.95809043273007	3.96001440914054	4.53236409762271	4.14999603192695	3.82306180932871	4.44829402325427	-0.034484235824995	0.95022220220892	0.988400419899929
Merged-chr5-139483669-4	chr5	139483159	139484159	+	954.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	832.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	7.44035221266656	7.52150478378527	6.85886902721049	6.87744339198576	7.27640036608201	6.28570902776313	-0.633643067892054	0.0736699497960945	0.356707641057462
Merged-chr5-32713317-2	chr5	32712817	32713817	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33025.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	6.24806045072021	6.4413833862565	5.89172219516898	6.1099239988923	6.04427105833614	5.90241578097357	-0.340439445796067	0.275497479458982	0.67303551354894
Merged-chr3-142589022-3	chr3	142588490	142589490	+	837.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-5857.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	3.80905311041033	4.23553805556651	4.20670848700514	4.68139738788246	4.52994956305373	4.61819965442674	1.35103430274784	0.00487878966115483	0.0602216778112107
Merged-chr13-43365549-4	chr13	43365043	43366043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5173.0	NM_178848	68346.0	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	5.17819330593018	4.94894344812502	5.02493415094239	5.01243759401566	4.51758215372301	4.62512946938457	-0.708864557091557	0.0878882135164476	0.393367435926477
Merged-chr16-55888415-2	chr16	55887915	55888915	+	819.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	6864.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	3.30697339620449	3.33720846284279	3.31638928621539	3.61338917483774	3.38327304464414	3.55491224583811	0.747431972916564	0.207329594161598	0.598105800717372
Merged-chr11-75682804-1	chr11	75682304	75683304	+	550.0	f1_c57bl6.idr	intron (NM_001277221, intron 1 of 1)	B1_Mur2|SINE|Alu	3545.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	2.86370472335694	2.62774240304657	2.80392242156546	2.73221145261876	2.70036153389258	2.99381230892044	0.213046767145315	0.773496218084086	0.94412263195524
Merged-chr16-27389906-4	chr16	27389392	27390392	+	869.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	936.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	6.96809120907182	7.10876164967574	7.04534574427652	7.22271897710486	7.18995801905599	7.02290027244132	0.167575094214824	0.484528728044568	0.826955188719244
Merged-chr16-44126647-4	chr16	44126143	44127143	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	12616.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	6.37759918610198	6.42613839247588	6.13044814879052	6.73150183458318	6.81004325509013	6.32000534428017	0.525843398091901	0.0742134075297164	0.358332804139305
Merged-chr4-132983174-4	chr4	132982661	132983661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	9066.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.37770734992207	5.88051101064633	5.90000082081773	6.20687055978665	6.24237460574758	6.47947942425074	0.381014968813573	0.23059330715573	0.626381219532661
Merged-chr19-4099975-4	chr19	4099502	4100502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	4.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	6.48493277536902	6.24435835444287	6.65919883231645	6.46017232326378	6.4638457305542	6.60660628353082	0.0697515183699005	0.802883265399158	0.953400450869743
Merged-chr15-58875975-4	chr15	58875466	58876466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3317.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	6.96390269976102	7.16153521671966	7.12825600216748	6.99370240893143	7.02596779945485	7.00572635517127	-0.117163785433105	0.625589932307681	0.892513881101067
Merged-chr18-74216915-2	chr18	74216415	74217415	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028868, intron 1 of 14)	intron (NM_028868, intron 1 of 14)	703.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	4.93210571852576	5.1189691059178	4.8830807316212	4.95228838794669	4.88789939808513	4.87280083011305	-0.181952326863107	0.631722755997087	0.895251011359995
Merged-chr3-84938161-3	chr3	84937633	84938633	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-14078.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.13418489678248	3.18237153203958	3.12293885194759	3.02996805499205	3.06590784868748	3.07688901345019	-0.402436222262949	0.533421810092324	0.852457858765356
Merged-chr13-20305851-3	chr13	20305344	20306344	+	784.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-167146.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.71993429377403	3.28029554795816	3.55975234329722	3.59501050344187	3.67812926161888	3.68339912525593	0.417372837433455	0.478133055300125	0.823624523176113
Merged-chr1-177248875-3	chr1	177248336	177249336	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011785)	promoter-TSS (NM_011785)	-69.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	3.90188905408327	4.17440530167323	4.21592955637757	3.89690941476539	3.65146697231122	3.96527279115334	-0.809665332628131	0.122082958197536	0.467378608401301
Merged-chr17-47011153-4	chr17	47010651	47011651	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-619.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	6.4137351547764	6.36255780575319	6.43026913214771	6.57326381717305	6.63992815564878	6.57813284025745	0.321464649729813	0.21493199514071	0.608170317702451
Merged-chr8-120441932-3	chr8	120441436	120442436	+	993.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46930.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	2.9853322801842	2.72233524364216	3.02029364471626	3.07962005472046	2.84515093968588	2.78490197077514	-0.0125179479869922	0.986258933198747	0.997033990984076
Merged-chr18-62174702-3	chr18	62174213	62175213	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5268.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.10511964647114	4.94004061473317	5.12925375398575	4.84261871277475	5.21715138980945	5.16042955708682	0.0637701095470271	0.866741395091456	0.969114221403526
Merged-chr2-129596523-3	chr2	129596026	129597026	+	966.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1064.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.4627351178078	8.56917565952184	8.41649773171993	8.29152482856976	8.8160998401998	8.34801358073821	0.0406725310480501	0.865991180952175	0.96870531720476
Merged-chr11-100396083-3	chr11	100395536	100396536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	1754.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	6.01799735976504	5.89993381313986	5.56005163448495	6.1703881942242	5.96590348144071	6.04420006387316	0.361263986970454	0.253609824945136	0.650978681198768
Merged-chr10-117451961-1	chr10	117451461	117452461	+	540.0	f1_balb.idr	Intergenic	B1_Mur2|SINE|Alu	-4526.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	4.69552804996157	4.15347518644444	4.36211907158947	4.86104895481357	4.49357594421458	4.47659924476295	0.480575754242882	0.311755425065782	0.706711311743954
Merged-chr18-20795768-2	chr18	20795268	20796268	+	973.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-49364.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	2.75579521660392	2.48580165935532	2.71680779399195	2.37687353195844	2.47456778282069	2.8481284424476	-0.435760865555419	0.600967379805647	1
Merged-chr1-131053402-4	chr1	131052886	131053886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008551)	TTS (NM_008551)	33541.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	5.82512059102843	5.68075167733426	5.66052693879665	6.33467315312642	6.35785740248127	6.30716755982458	1.04465960178204	0.000312432173125503	0.00720933340583107
Merged-chr15-99473756-3	chr15	99473253	99474253	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	977.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.21923865231854	4.0960408050785	4.01646200686428	4.4472050079356	4.30790506113173	4.18698898851134	0.556769465308541	0.236681643328426	0.633037807073985
Merged-chr7-110908813-1	chr7	110908313	110909313	+	592.0	f0_balb.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	3828.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	4.14993822991969	4.07301117359484	4.34964945070332	4.30156968443831	4.42392645528662	4.41645446174076	0.526379530593304	0.249317888836316	0.646251553365766
Merged-chr18-53263164-2	chr18	53262664	53263664	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	17502.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.41214279249036	5.53138341085736	5.35043572640152	5.52939258752803	5.70623122177725	5.28272551843494	0.178376229631838	0.605389022598977	0.88352351689788
Merged-chr13-14066045-2	chr13	14065545	14066545	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	intron (NM_194262, intron 2 of 23)	2261.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	3.16437737617604	3.47409913568376	3.47235907087848	3.497546270756	3.37193212137368	3.43431943297374	0.220355791197916	0.717221889786259	0.926979087819795
Merged-chr5-45677861-4	chr5	45677362	45678362	+	836.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019438, intron 7 of 20)	MTD|LTR|ERVL-MaLR	7937.0	NM_019438	54392.0	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	2.72952164206978	2.91808361106365	2.89154885624418	2.66561991017247	2.94172627104092	2.78073893136597	-0.211892689085925	0.77372607897556	0.944173663294033
Merged-chr8-109705492-4	chr8	109704999	109705999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-47.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	7.3977526091695	7.67938979848131	7.63589057900962	7.33995163183802	7.24693705068498	7.13616317868786	-0.484390112220112	0.042076042128037	0.256855110830734
Merged-chr4-130786853-2	chr4	130786353	130787353	+	922.0625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5684.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.3244315984494	5.44105326173684	6.3279612743137	5.98219888654764	5.78683396664973	5.58386680302998	0.0405820260152245	0.922198011453841	0.982542868764899
Merged-chr7-135598639-4	chr7	135598133	135599133	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	5152.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	4.64230114207079	4.58603608544085	5.02987850354732	4.71064260282332	4.60035380550232	4.82255696767182	-0.110025589228321	0.794187478052697	0.950612113381219
Merged-chr18-67212968-3	chr18	67212495	67213495	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 7 of 11)	intron (NM_177137, intron 7 of 11)	7636.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	3.77758193891943	3.84536938048016	3.41934771087896	3.35472207581287	3.08701262347297	3.37455355334372	-1.65845750728906	0.0095090217911704	0.0970473059241637
Merged-chr3-37331358-3	chr3	37330875	37331875	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17278.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	3.67190592004457	3.89342334327902	3.67288378085099	3.66424611244673	3.62033373670689	3.89437131970441	-0.101842367357197	0.852429065200984	0.965385693881201
Merged-chr17-28232629-4	chr17	28232132	28233132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	-122.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	7.95268416257961	8.42084534301774	7.68459056421319	7.97919420521766	8.2264830136181	7.71256787350671	-0.0966898147245947	0.735520994624295	0.932744628746236
Merged-chr8-117361245-2	chr8	117360745	117361745	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12075.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.07464921513324	3.91022521811063	3.90624762614696	3.79649957018794	4.13664021703604	4.07321691554816	0.133804439857458	0.793406171814001	0.950406028169806
Merged-chr1-36580767-4	chr1	36580273	36581273	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 11 of 14)	intron (NM_001126046, intron 11 of 14)	12559.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	5.56802065659875	5.52567948608632	5.89741884982466	5.89053456625205	5.84024270692558	5.84009324842986	0.356052607741392	0.262533798449356	0.660537266762786
Merged-chr15-79833533-2	chr15	79833062	79834062	+	748.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028763, exon 4 of 5)	exon (NM_028763, exon 4 of 5)	771.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	2.46376245456358	2.51128296050738	2.7142497285928	2.20750856637831	2.18529223790933	2.35538332846793	-2.25823241410792	0.0139558561399948	1
Merged-chr6-29609269-4	chr6	29608786	29609786	+	728.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361290, intron 1 of 23)	CpG	563.0	NM_177296	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	6.75502745144321	7.21306178641956	7.06369648618627	6.80255380141212	6.96206481956385	6.81594120657753	-0.24372190847901	0.362061920780065	0.747675323428227
Merged-chr15-84191621-2	chr15	84191121	84192121	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-612.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	6.38850797572284	6.6376188987771	6.72592376397048	6.79427912560744	6.75829954749805	6.62387915045939	0.230242725034233	0.38767075718761	0.767720407550912
Merged-chr17-34034271-4	chr17	34033718	34034718	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 4 of 9)	intron (NM_001205214, intron 4 of 9)	1868.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	3.08215674958277	3.211382356092	3.29365839099925	3.26435461945884	3.19132206445638	3.41827272922665	0.388340011412017	0.536227993558984	0.85392789486322
Merged-chr2-70092340-2	chr2	70091840	70092840	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	RLTR21|LTR|ERVK	53214.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	4.07655464905792	3.97361059698439	4.05172147300158	3.53868995646538	3.71865858070424	3.77877781264377	-1.13012255686644	0.0330902837305062	0.221831802179178
Merged-chr2-49744442-4	chr2	49743995	49744995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 20 of 25)	intron (NM_008449, intron 20 of 25)	-43191.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	7.49456514489224	7.65364976778087	7.27423376495067	7.57130179292409	8.0717069187997	7.52147205160736	0.38632192961818	0.154615002991641	0.523896269417052
Merged-chr9-101552962-4	chr9	101552453	101553453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210759.0	NR_110509	102633035.0	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	3.92330268497086	3.88988493105287	4.09219517066559	3.48571648919209	3.73518533943422	3.97997395445541	-0.709588710670736	0.1983307665667	0.586636393460951
Merged-chr9-31050433-4	chr9	31049935	31050935	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	B4A|SINE|B4	19791.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	3.2402781003471	2.83373367880913	2.98216400356516	2.79789587454483	2.72349364698505	2.99560965698005	-0.93660149366402	0.201462151644196	0.590984054786189
Merged-chr2-75734884-2	chr2	75734391	75735391	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-30228.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.21792536490945	5.35227161987349	5.15744667772227	5.44345313017867	5.24460741856491	5.35173063122385	0.188925254165971	0.587041319088182	0.875769926947203
Merged-chr17-14953657-4	chr17	14953154	14954154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 7 of 11)	intron (NM_024250, intron 7 of 11)	7606.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	5.16985736907052	5.22966468622672	5.66542209538126	4.93084113698606	5.15296640371894	5.60460641778671	-0.226153798072636	0.577654508507457	0.872189231230624
Merged-chr3-32365717-4	chr3	32365150	32366150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	15.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	5.15784745218836	5.03581066732329	5.37540465108753	5.05212295275362	5.1332282775397	4.74689363789529	-0.394074848461731	0.311390130426276	0.706465219571547
Merged-chr17-31021709-2	chr17	31021244	31022244	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35950.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.84639113111813	5.81238338738509	5.56551702909506	5.18419217477584	5.09494946012496	5.11574986243973	-1.21210685054348	0.000348179828049221	0.00787885209997764
Merged-chr19-34386617-3	chr19	34386089	34387089	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88546.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	2.86207117819906	2.68506163569788	2.93034481251046	2.58574434430746	2.95843261403964	3.16900851749505	0.458705289136388	0.555324224829613	0.863191483122339
Merged-chr13-40968233-2	chr13	40967733	40968733	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-32777.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	6.72361405665866	6.72525434047925	6.39974476013997	6.33229192036126	6.27020627256374	5.58038485885499	-0.835682775016436	0.0143773016568505	0.128995742534313
Merged-chr12-98733567-2	chr12	98733067	98734067	+	870.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011877, exon 2 of 19)	exon (NM_011877, exon 2 of 19)	1078.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	2.99912247722542	3.03729039162849	3.13483807031397	3.02736797071596	2.80741500360363	3.26090827594653	-0.0835169576128643	0.904176882671497	0.978052728746017
Merged-chr19-12585476-4	chr19	12584979	12585979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015503)	TTS (NR_015503)	11087.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	7.01793045986199	7.39193638934895	6.92838799103785	7.14385155989848	7.4323871647886	7.45754742346423	0.31944375043806	0.232972636686146	0.629348326517137
Merged-chr19-12002374-4	chr19	12001898	12002898	+	954.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34342.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	3.90563230786834	3.78605399444432	3.55320317038085	3.65760683378124	3.57053459084061	3.88729264634194	-0.195777103082189	0.727263930775773	0.930141386998351
Merged-chr17-33641629-2	chr17	33641129	33642129	+	647.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028279, exon 2 of 10)	non-coding (NR_028279, exon 2 of 10)	3534.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	4.72376512337905	4.82848112994201	5.46440359690858	4.96252709574494	4.7958047674192	5.25410659395215	-0.0572084406556101	0.897223408704912	0.975963394862323
Merged-chr11-67588580-4	chr11	67588072	67589072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 1 of 13)	MIR3|SINE|MIR	2072.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.99355968325711	3.82475640365368	3.56577331903142	4.35842542615918	4.24776180453178	3.98558655575904	1.16336551299054	0.0337440462249281	0.224594694752299
Merged-chr5-122509820-2	chr5	122509320	122510320	+	759.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7595.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	2.11111510996459	2.07810791655809	2.34698037496037	1.9525920835124	1.94057235208505	2.23321149825114	-1.03185708544849	0.281435117200774	1
Merged-chr9-41179598-2	chr9	41179091	41180091	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21529.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.62994599273349	3.60172031839482	3.40424773273455	3.25150899574846	3.21689478701024	3.6359210260336	-0.677175666643048	0.275260939651339	0.672734308479956
Merged-chr10-58341884-3	chr10	58341374	58342374	+	602.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-10089.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	3.92839647916522	4.17822573618311	4.44240236486233	3.96267652485836	4.14671563990051	4.42980894890106	-0.011993476901853	0.981327072769643	0.995690081075595
Merged-chr16-11411300-2	chr16	11410796	11411796	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290148, intron 1 of 13)	intron (NM_001290148, intron 1 of 13)	5648.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.26377196972292	3.27644890816768	3.17277153741993	3.35133918529382	2.98633889842985	2.93058647140066	-0.572592714744366	0.402780368615515	0.778267861313883
Merged-chr5-125394369-4	chr5	125393852	125394852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-4335.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.05878198745566	8.15285992326308	7.95078397936855	7.99354399694321	8.22964858777302	7.69935526294111	-0.0814152849618675	0.737270426095217	0.933677151386322
Merged-chr8-24419959-3	chr8	24419470	24420470	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18976.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	6.55140722209784	6.35534096328839	6.23097313486006	6.25047327534533	6.26496579116662	5.89157144012296	-0.38728130040699	0.19472022764518	0.582229434450918
Merged-chr2-113847675-2	chr2	113847182	113848182	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181416, intron 1 of 11)	intron (NM_181416, intron 1 of 11)	979.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	5.4479162640162	5.77269442022327	5.84089254609993	6.03670754693812	5.89490932734744	6.0397486519128	0.528662278191606	0.0957181497079479	0.412476865756846
Merged-chr14-77832581-4	chr14	77832063	77833063	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 5 of 5)	RMER6B|LTR|ERVK	-33595.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	4.24124456004358	4.55408026607668	4.48723241271486	5.08464847687574	5.29557883259577	5.03109498720332	1.63812898466154	7.74638319148239e-05	0.00228567749147825
Merged-chr6-134556398-3	chr6	134555881	134556881	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	MER92A|LTR|ERV1	10532.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.51977614171742	4.1961797648043	4.97933233069822	6.64941639927749	6.97692598840226	6.32978017270999	4.24646446441959	4.39244073658776e-23	5.37479718838227e-20
Merged-chr15-98930253-2	chr15	98929753	98930753	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4137.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	2.31327871438892	2.34653738472076	2.61729091989804	2.16002213253348	2.17295013826888	2.51119554071959	-0.927132927138326	0.30088486658815	1
Merged-chr7-45367304-7	chr7	45366840	45367840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029741)	promoter-TSS (NM_029741)	107.0	NR_027802	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	5.90990761372582	6.06253266951386	5.83259072415184	5.81076235792443	5.8802796604077	5.43274625309646	-0.367191441512246	0.260576162862035	0.658027962349749
Merged-chr12-4190472-2	chr12	4189972	4190972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	43493.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.63768217718402	5.91381688809454	5.97726347685886	5.16857308635142	5.22091450326015	5.7417694388114	-0.856957313650041	0.0179342661631828	0.150400566307813
Merged-chr19-5639590-2	chr19	5639125	5640125	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 4 of 10)	(CAAG)n|Simple_repeat|Simple_repeat	2135.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.70697353418231	4.06785270965922	4.36427345308007	3.88757089039345	4.19136381333396	4.17990920498077	0.0788419988580645	0.884319653171585	0.973466734537782
Merged-chr10-20770205-4	chr10	20769730	20770730	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45152.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	8.04883896622668	7.93264848533218	7.58331759738844	8.05255188612687	8.16646384056505	7.5785255938073	0.126805261953309	0.637421858968632	0.897347930665099
Merged-chr10-62216916-4	chr10	62216413	62217413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	14305.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	6.54571509518865	6.57016769034977	6.62398325930196	6.47105490479692	6.32856506725583	6.54986401606296	-0.214167209368375	0.41679318461119	0.787674653186034
Merged-chr9-107636427-2	chr9	107635927	107636927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1085.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	4.35747168151267	4.21059361276943	4.29673234799127	4.49102052662794	4.50780332484053	4.57742644918843	0.604210645709357	0.165464418833412	0.540492417944118
Merged-chr12-80816151-2	chr12	80815651	80816651	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.19610269547864	5.50562410040889	5.48530046583676	6.05874214641466	5.99468064308077	5.91195120023475	0.359666854094452	0.322323179758431	0.715788175327325
Merged-chr2-29820482-6	chr2	29819975	29820975	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6914.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	4.51151443039104	4.48658209922381	4.73471523887889	4.75220560716795	5.02219149701513	5.0468660393138	0.862535864575609	0.0340582250239388	0.22573815419722
Merged-chr1-142467361-5	chr1	142466851	142467851	+	951.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-1173346.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	3.79256698137312	4.20796200243543	4.00649357548125	3.93402099360829	3.69334622457289	3.87836108302687	-0.558624995415686	0.293061526512474	0.690138103226276
Merged-chr11-44410157-2	chr11	44409657	44410657	+	645.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001303244, exon 5 of 8)	exon (NM_001303244, exon 5 of 8)	10094.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.02266112783181	2.94705500250481	3.37588730441375	3.27973062237119	3.41656568357939	3.22537730893549	0.809502647153492	0.224715233976745	0.619609949365475
Merged-chr5-65885558-2	chr5	65885041	65886041	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	21972.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	4.06619043182324	3.88821800573888	3.77704053348272	3.69080582055048	3.33152516209038	3.25786630129917	-1.6629773016981	0.00751223291910195	0.0822795678205391
Merged-chr1-152617263-3	chr1	152616744	152617744	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7973.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.79649050745296	6.56971587291937	6.85361466867956	6.83647119813654	6.95899400266881	6.7623405436508	0.188402909753162	0.466504835790341	0.817586753758551
Merged-chr16-33912165-4	chr16	33911684	33912684	+	928.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54854.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.72916124385438	4.84886530389795	5.1043159564777	4.85827311199664	4.63537158079902	4.97137877585342	-0.167968138480105	0.679633131878104	0.913968931010008
Merged-chr2-156258643-4	chr2	156258145	156259145	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-53828.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.65405741278053	6.59736469165346	6.20407473549536	6.33883166981284	6.38849922145223	6.13088797887774	-0.349393832845828	0.233920369842234	0.630158568371129
Merged-chr3-81982730-4	chr3	81982224	81983224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6996.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	6.52876023285358	6.99533682024319	6.49109757618357	6.61895853627513	6.90536872289574	6.35386579440014	-0.0685010924249867	0.826107362158211	0.959073855765996
Merged-chr10-40384055-4	chr10	40383555	40384555	+	787.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	34747.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	2.92345631268494	2.8450344434229	2.95444107537369	2.76792948590088	2.76183369015177	2.72156557592184	-0.798704230663774	0.264401735640131	0.662278484737486
Merged-chr15-103501570-2	chr15	103501086	103502086	+	642.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.79401704929963	3.67626182867344	3.61286309269202	3.83632116599346	3.61618661297064	3.84086401189012	0.206680171417637	0.70351877149123	0.922108924938678
Merged-chr2-180127871-3	chr2	180127364	180128364	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	8498.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	4.27722511344677	4.44140722099602	4.32756804059573	3.5795320616457	3.40712517682811	3.99092983966927	-2.18445067793309	0.000140533325899784	0.0037628173244121
Merged-chr16-32191766-2	chr16	32191266	32192266	+	860.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11966.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	2.77916369469184	2.43976045902086	2.7143090183003	2.69227592769628	2.67091801942044	2.78762394050827	0.345389856658949	0.656267171750216	1
Merged-chr5-125292096-4	chr5	125291595	125292595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48999.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.70520806954244	5.77821263649617	5.81665488567809	5.67344255096569	5.65320239118929	5.80425459193659	-0.107294304887362	0.727424146778146	0.930190693178362
Merged-chr5-117158017-2	chr5	117157517	117158517	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	MTD|LTR|ERVL-MaLR	24429.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.98862984089232	5.73560866477918	6.06864348408453	6.03383875395187	5.58626456402753	5.95259843558348	-0.121651670054275	0.711093568534515	0.924558647751225
Merged-chr5-21199370-2	chr5	21198870	21199870	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1VL4|LINE|L1	13103.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.61628983101685	4.82096263111346	5.08475235199488	4.59283764586819	4.39547938950384	4.81626076517126	-0.571565033529403	0.189233064413427	0.574868493270401
Merged-chr17-28007343-4	chr17	28006834	28007834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73250.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.72907902156274	5.33031079492182	5.54493286399663	5.25425849679175	5.08188356452523	5.14375874885644	-0.761930591761649	0.0324394353574325	0.218932641513605
Merged-chr17-71262320-2	chr17	71261813	71262813	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	RSINE1|SINE|B4	48698.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.71595058229212	3.61701892181047	3.68276484447456	3.30903559913563	3.04094355055922	3.12819178349363	-2.09410247135451	0.0012628201071994	0.0215851962777009
Merged-chr1-128106559-2	chr1	128106059	128107059	+	842.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_181750, intron 1 of 26)	intron (NM_181750, intron 1 of 26)	3253.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	2.75135610619196	2.83176828855531	2.66224564235218	2.91238167754585	3.00109386270045	2.92573501776814	0.984161659118107	0.173245320490261	0.551957215225209
Merged-chr5-139391022-1	chr5	139390522	139391522	+	541.0	f1_balb.idr	intron (NM_001038703, intron 1 of 1)	intron (NM_001038703, intron 1 of 1)	1118.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	4.28632371129953	4.22252575630244	4.54631224925494	4.20888002446456	4.08510309748974	4.37486376774196	-0.357700306087943	0.44634145577042	0.805829266594444
Merged-chr9-111058068-4	chr9	111057504	111058504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	-486.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.86199173340859	8.63186073309196	8.24656910434144	8.34829992510118	8.56800620344091	7.96294193892803	-0.39665216396122	0.145547011516319	0.508723671941942
Merged-chr14-72558152-2	chr14	72557652	72558652	+	772.5	f0_balb.idr|f1_balb.idr	intron (NM_207636, intron 19 of 25)	intron (NM_207636, intron 19 of 25)	151851.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.3548928757164	3.76052439053098	3.79282497486494	3.46434106844462	3.72381648581184	3.6615022083172	-0.0861121766969226	0.884422645510909	0.973503710448868
Merged-chr14-70206614-3	chr14	70206111	70207111	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	-589.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	5.22651431179402	5.52369541786552	4.88708029725273	4.10447512671134	3.83369912241899	4.25140083368708	-3.06074007717628	4.80068843384515e-10	5.52497487141614e-08
Merged-chr12-78862111-4	chr12	78861597	78862597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	25.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	7.64958045719391	7.72707832692076	7.52701126849401	7.7364189734003	7.68505766247268	7.29719004836981	-0.0651475602572738	0.789847443035247	0.949311112850285
Merged-chr4-132482470-2	chr4	132481970	132482970	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-18549.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	3.13373988132104	3.12390790812422	2.91104095111292	2.98547966115056	2.74438259226454	3.04589415283533	-0.650421351419718	0.358730386477883	0.745080785526968
Merged-chr8-106145509-4	chr8	106145002	106146002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-4852.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	4.1713896888454	4.25048047695592	4.4193086343251	3.98047764781448	4.05388441287157	4.36349864076864	-0.401360109934534	0.405666085521288	0.780363686906421
Merged-chr13-116951001-2	chr13	116950501	116951501	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	74515.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.96992016264509	4.18972920740775	4.22953003624009	4.72619480218369	5.01656555011565	4.61329341022265	1.72093789949238	0.000164395361148514	0.00427335495484084
Merged-chr5-105520087-3	chr5	105519547	105520547	+	962.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	576.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.8391592617062	6.89390129920327	6.71779631754877	6.35300609741748	6.30408027685952	6.00861435629862	-0.932944483669479	0.000725688243559193	0.0140503507948901
Merged-chr17-51178738-4	chr17	51178229	51179229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	CpG	623.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	9.17580184983984	9.19188577445509	8.78095765738714	9.11713139972003	9.03783515568851	8.76036086102084	-0.114327229646821	0.620079357027997	0.890023686663772
Merged-chr18-38227888-4	chr18	38227414	38228414	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3Cz|LINE|L1	-18152.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	4.67364612810775	4.71100006178376	4.64977496491086	4.78422309789399	4.79090419619213	4.50190612960507	0.0679486859432831	0.868426452481804	0.969649687231864
Merged-chr3-37617171-1	chr3	37616671	37617671	+	592.0	f0_balb.idr	Intergenic	Intergenic	3258.0	NR_130161	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	4.28604753237451	4.52879350966059	4.55996943874913	4.11505029720131	4.12353323667662	4.54827127891391	-0.510392220522114	0.28159306583211	0.679724865009957
Merged-chr11-61854409-7	chr11	61853913	61854913	+	972.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 1 of 26)	CpG	679.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	6.9967379055994	6.88183017519428	7.401564568133	6.94738728691212	6.9625962066206	7.17948500813096	-0.112616184075683	0.678508476931073	0.913498554171186
Merged-chr11-95333425-4	chr11	95332918	95333918	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	3.18818087406502	2.93296533268371	2.99938049930588	3.19163324985637	3.08591290925017	3.19163366222112	0.474440582061199	0.473971239599358	0.821218534578198
Merged-chr15-89089069-4	chr15	89088573	89089573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027905)	promoter-TSS (NM_027905)	35.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	5.02136022337447	4.70792785533048	5.01874024891675	5.20080857850947	4.65650737940485	4.97898286520202	0.086298478361199	0.836167435930468	0.961948623063023
Merged-chr16-12471746-4	chr16	12471233	12472233	+	927.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-339657.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.82554422328131	4.48694533885013	4.02634994557604	3.85372084741372	3.99197362079574	3.89264893208477	-0.683674575079838	0.210466010531247	0.602621125710907
Merged-chr8-94811952-4	chr8	94811435	94812435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011332, exon 3 of 3)	3' UTR (NM_011332, exon 3 of 3)	1482.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	4.55051096487055	4.39782266243421	4.99197151711589	4.528062378965	4.64914376374905	5.17541501775347	0.332769579766449	0.481740576630283	0.825208669475694
Merged-chr2-170144037-4	chr2	170143523	170144523	+	676.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1348.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.85924992929601	3.81100740766225	3.71306606701855	3.92857449500932	4.0284489568789	3.8379992226952	0.437455945894282	0.396866920826939	0.773812221163503
Merged-chr1-139035408-3	chr1	139034906	139035906	+	707.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 3 of 21)	MTD|LTR|ERVL-MaLR	57749.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	2.88380118131322	2.74342769580248	2.98684063650561	3.14003330051448	2.91638394855247	2.93911666439055	0.6315969220042	0.367310619754349	0.752213385063617
Merged-chr17-43573890-4	chr17	43573422	43574422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	5471.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	6.73260756560466	6.76744587555412	6.77568288991601	6.45730338530677	6.54726226682802	6.50675201402048	-0.399877818225121	0.115066866367276	0.452801315520848
Merged-chr2-24387232-2	chr2	24386732	24387732	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355232, intron 1 of 16)	intron (NM_001355232, intron 1 of 16)	616.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	5.62180261748059	5.80177354710025	5.63543612353483	5.47380506478671	5.56121142966195	5.67070491067108	-0.235294218290269	0.462348002363144	0.81518556948345
Merged-chr17-34205161-2	chr17	34204661	34205661	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011530, intron 1 of 11)	intron (NM_011530, intron 1 of 11)	682.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	5.71214777260751	5.45888201182984	5.81543069817215	5.96762557285618	6.05131721602259	6.0170712580264	0.629339632921635	0.0427450311560578	0.259217881527094
Merged-chr14-54432313-1	chr14	54431813	54432813	+	658.0	f1_c57bl6.idr	intron (NM_008608, intron 1 of 9)	CpG	715.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	3.28885369989666	3.11910842339736	3.07368618567972	3.46972934507174	3.234132256051	3.4392596846636	0.865641727203293	0.174945005216982	0.554615474222784
Merged-chr11-23763625-1	chr11	23763125	23764125	+	595.0	f0_balb.idr	intron (NM_009044, intron 1 of 9)	B4A|SINE|B4	7345.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	4.68994263880656	4.24079000066535	4.62685831836766	4.65211029641502	4.35811567574137	4.94220238177193	0.314585190808659	0.503383031716456	0.837010205116912
Merged-chr6-122875018-2	chr6	122874518	122875518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026267, intron 1 of 7)	CpG	461.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	7.66146876658251	7.54453241032388	7.36409006436655	7.56760431166707	7.48252286131129	7.12744157941763	-0.175409949570209	0.486442694719678	0.827855940662378
Merged-chr7-43667763-4	chr7	43667280	43668280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-4251.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	7.35181129319879	7.06371018464057	6.90525679085346	7.3794666824611	7.45912977790556	7.0778450341256	0.291387394232333	0.27437598945808	0.671721462492876
Merged-chr6-42264918-4	chr6	42264413	42265413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007610)	promoter-TSS (NM_007610)	-72.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	6.62431224440124	6.77343358810403	6.43942620367739	6.77588933638768	7.09332113359083	6.82351671336478	0.442860602932798	0.102914066947833	0.427792386539026
Merged-chr9-122120278-3	chr9	122119791	122120791	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	2832.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	2.97849597670338	2.90428403808046	3.086148985105	3.23174983902388	3.16266286226197	2.97728200652927	0.662038734412036	0.323696263792065	0.716924025595841
Merged-chr10-21991524-4	chr10	21991034	21992034	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-689.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.10047197350992	6.95927411842777	7.40838812388192	7.14858569075575	7.4353413028961	7.12781519874192	0.136581355447368	0.606104135162517	0.883866308274321
Merged-chr10-91183356-2	chr10	91182856	91183856	+	660.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-11737.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.23975831544685	4.09186566188918	4.45535638409891	4.26097366665157	4.31076105697566	4.56015485994818	0.306110303096698	0.511716417325432	0.841519675193282
Merged-chr11-101443081-2	chr11	101442581	101443581	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011289, intron 2 of 4)	intron (NM_011289, intron 2 of 4)	836.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	7.48369133842661	7.5870605411	7.26545677567235	7.29979548982687	7.62192766603772	6.94656718666128	-0.18356655927338	0.511527365899352	0.841435415581079
Merged-chr17-65884364-2	chr17	65883829	65884829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	CpG	594.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	5.73998886259435	5.71417055645113	5.74359310824654	5.74919141860826	5.75213035864695	6.06044296469009	0.215566792814506	0.489992434994058	0.829980359087456
Merged-chr10-118038550-3	chr10	118038055	118039055	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103232.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.52304499963877	4.17599241581105	4.13900379548795	3.24889670066656	3.33141940149583	3.64738119984688	-3.19520440174025	7.72434839867075e-07	4.32813186233398e-05
Merged-chr11-55013923-2	chr11	55013423	55014423	+	555.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 2 of 24)	intron (NR_138556, intron 2 of 24)	19548.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	4.29743827356421	4.06632576028928	4.37758564662071	4.24906795383531	3.86330072074117	4.3613390555012	-0.230970584907111	0.64634105863736	0.900987344019692
Merged-chr15-88142187-3	chr15	88141687	88142687	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172687.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	4.09922244054103	4.1374590046033	4.11070432080129	3.08508736482202	2.96920368403654	3.34904168285433	-4.94392859695308	1.51704565632967e-07	1.02961121510505e-05
Merged-chr11-115076814-4	chr11	115076317	115077317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14614.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	6.22126889398113	5.87229253830426	5.74278647615129	5.35084125828678	5.43800628030507	5.49513157033923	-0.996282974430109	0.00285688755832447	0.0405520129568513
Merged-chr18-35599185-4	chr18	35598671	35599671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357471, intron 1 of 3)	CpG	554.0	NM_001357472	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	7.59499265369837	8.0811680973196	7.85565525352921	7.80917251103767	7.85031880531955	7.66117885484735	-0.117428631536463	0.630349947918107	0.894709964383782
Merged-chr6-125331174-4	chr6	125330670	125331670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011324, exon 2 of 12)	exon (NM_011324, exon 2 of 12)	9830.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	5.69181476567263	5.79930157041546	6.13316214300986	6.05115352948774	5.76361948179033	5.98022168441042	0.0975941066106545	0.761726540798079	0.941289700849879
Merged-chr8-108694009-4	chr8	108693515	108694515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20629.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.56539091056946	5.45761102480182	5.45138963522377	5.33216798779976	5.1215177368611	5.33332588829328	-0.465668481554591	0.17132943152889	0.54932102877065
Merged-chr18-62176815-11	chr18	62176210	62177210	+	904.0242310000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3271.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.90689001647654	5.76275693688928	5.76080153278746	5.64930397148713	5.62940471634234	5.63583431081187	-0.322284714269808	0.296296385998908	0.693022144754045
Merged-chr12-51355501-4	chr12	51355000	51356000	+	774.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015099, intron 4 of 14)	MTD|LTR|ERVL-MaLR	7270.0	NM_001015099	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	3.23569628208722	3.43976027650021	3.51328126675607	3.29634297811137	3.8873901736906	3.35854560531083	0.555966537455484	0.392178356071571	0.770943461123581
Merged-chr11-62280783-4	chr11	62280269	62281269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	626.0	NM_027198	69747.0	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	7.19478365403131	7.1418862880337	6.72407409502446	6.99909592108138	7.35992218664448	6.95471439280206	0.120975519485967	0.665919313715134	0.907947624137969
Merged-chr9-56097972-7	chr9	56097470	56098470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	7994.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	5.11264873111708	5.20837469772469	5.57125279337094	5.62291911441459	5.59592325916274	5.57950874530368	0.584670891113438	0.092073906435168	0.404182833376811
Merged-chr18-60728749-2	chr18	60728249	60729249	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1183.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.91352677309967	7.149551197685	7.06248443930734	7.13137247588256	7.16108058410388	6.78940694080454	0.00322641665651176	0.990036952188031	0.997699191346824
Merged-chr12-83688149-4	chr12	83687658	83688658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	6.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	8.43599897030104	8.66177456888585	8.57590215500873	8.5220609182401	8.70740412532756	8.46054235834902	0.014376833466377	0.945820646117736	0.98796006280508
Merged-chr16-87432609-4	chr16	87432098	87433098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081068)	promoter-TSS (NM_001081068)	8.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	6.43173403061056	6.41123203473786	6.35037309307757	6.63119779847651	6.59136547735199	6.2464882059138	0.179860000060995	0.517360173938648	0.844527792582824
Merged-chr2-129413787-4	chr2	129413308	129414308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42669.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.70036974602659	5.39596028199079	5.60421653055475	4.83372482497351	4.82291158671273	4.95173563119824	-1.45345822972369	6.51349711145501e-05	0.00197440826101985
Merged-chr17-31658851-4	chr17	31658353	31659353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357907)	promoter-TSS (NM_001357907)	-89.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	8.28877117113041	8.46872489618336	7.9888368370714	8.26714770830967	7.95106651553025	7.56809020963734	-0.42500146918733	0.122337908254476	0.467799120431176
Merged-chr16-17554167-4	chr16	17553685	17554685	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	7062.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	4.47214741807659	4.79961566716812	4.21622869270422	3.81944907902067	3.91747991013663	3.68451786098557	-2.02278697955187	0.000204414994738105	0.00510626324892471
Merged-chr16-94241348-4	chr16	94240847	94241847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	48944.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	6.98141783904111	6.79587121998043	6.74669364214905	7.02541110887127	7.16418409146314	6.98353266801494	0.32914217395202	0.187184075988684	0.572128204607461
Merged-chr2-112492062-1	chr2	112491562	112492562	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-902.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	4.12491814876883	4.49848025288187	4.34905917378384	4.30098308206534	4.06212483409611	4.37326954821628	-0.244025590886301	0.60892023988358	0.885053989692691
Merged-chr18-9493448-4	chr18	9492957	9493957	+	865.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43303.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.76015248603917	5.7770904068716	4.87509885573923	5.57757628635448	5.32125911783524	4.37841905402765	-0.688122936942723	0.633414932525362	0.896057221400744
Merged-chr19-16435646-4	chr19	16435130	16436130	+	851.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008137)	promoter-TSS (NM_008137)	-37.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	3.19987691844346	2.97285130132893	3.2140190373898	3.17493254060084	2.76829097131322	3.11488873710916	-0.460257363205559	0.514868298799155	0.843294583748531
Merged-chr1-59684229-2	chr1	59683729	59684729	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-777.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	4.85508296988432	5.10784849773781	5.08616269239108	4.90678567867167	5.08711138330427	4.90232965253822	-0.0930420394410264	0.807133961008057	0.954472851360829
Merged-chr18-53261442-4	chr18	53260929	53261929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	15767.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.18431293444743	7.22227510114189	6.72237157274575	7.2323929449104	7.3324157237886	6.6582700333122	0.071401677845052	0.815283745172769	0.956370078970016
Merged-chr16-35756065-3	chr16	35755569	35756569	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13287.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.33186458015428	5.72400253270536	5.85449296128848	6.04974809316796	6.30479274922082	5.94022040879228	0.828773951261563	0.0132368226205035	0.122226286031978
Merged-chr13-100575547-2	chr13	100575047	100576047	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22829.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	3.21421046647859	2.92228246166652	3.08720081241754	3.00467203765631	3.17767945685773	3.38098450266807	0.481448672710402	0.476073401888472	0.822326571957485
Merged-chr1-154103775-4	chr1	154103272	154104272	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-97415.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.72857979364738	6.65942226143774	6.18141834368309	6.15382256137269	6.566765616807	6.02963450068063	-0.437139646909494	0.180402029468164	0.562200321386632
Merged-chr5-143548681-4	chr5	143548185	143549185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026050)	promoter-TSS (NM_026050)	-21.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	6.21952619071022	6.33441800828112	6.3231100173312	6.30197005664668	6.03826477017535	5.9980931335242	-0.285834288051797	0.320026015039468	0.713841334732408
Merged-chr5-76048277-4	chr5	76047746	76048746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69818.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	3.25561089641931	3.17308031285879	3.41592433877826	3.23974099740381	3.29547278962927	3.20818210449848	-0.115852657254089	0.852116074756823	0.96531854415899
Merged-chr14-21268433-4	chr14	21267909	21268909	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	RMER19B|LTR|ERVK	192257.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.42724718501873	4.0349749118135	3.73144278503523	3.73204327727652	3.67476502724021	3.74810882218664	-1.20256743697195	0.0324591775357572	0.219030349882028
Merged-chr7-143054096-2	chr7	143053596	143054596	+	873.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110354)	promoter-TSS (NR_110354)	-410.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	5.90969178149388	5.63867792945651	5.89025582013875	5.97723674415445	5.91647963784174	6.02039662919138	0.273080711342554	0.369579543913502	0.754241195123084
Merged-chr9-41160692-2	chr9	41160192	41161192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2630.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.25152409764238	5.74001541933404	6.3027530119295	6.83974072001065	6.65726098506584	6.76941841625009	1.04255521982484	0.000584783677567691	0.0118969878344872
Merged-chr17-85090600-4	chr17	85090094	85091094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	-106.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	6.36295680224882	6.67905613386608	6.80092085000346	6.47147446645795	6.57366458713811	6.20874307524863	-0.295692035444828	0.311971722224619	0.706842016238012
Merged-chr18-84858317-3	chr18	84857806	84858806	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	6968.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.55409790895971	3.38954795865201	3.45836486140875	3.28692467401052	3.14008621256134	3.47533965886235	-0.667651959120269	0.277322862915167	0.67454414854118
Merged-chr6-120083933-2	chr6	120083433	120084433	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9447.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.68755998142407	4.82700870601091	4.18255421714603	4.39175512218403	4.05645876210654	4.15073548378555	-1.0246929074637	0.0384049930278398	0.242599151366519
Merged-chr7-101909827-2	chr7	101909327	101910327	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 2 of 4)	intron (NM_025605, intron 2 of 4)	-3468.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	4.84213131714044	4.63935995959931	5.32349808504998	4.66694137068745	4.5887154859397	4.74727097949621	-0.656109278902841	0.133386453733996	0.488525905290653
Merged-chr15-38516600-2	chr15	38516100	38517100	+	774.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	2666.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	3.34871617646564	3.09944895243659	3.01951226079038	3.10714122763299	3.16311668437307	3.48837695235212	0.37133741794866	0.580717668586244	0.872996490835126
Merged-chr13-64373885-4	chr13	64373364	64374364	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3344.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.38569454232091	4.59157129843976	4.47933837634599	4.41410865422277	4.26947556448824	4.37391572827823	-0.35949057322715	0.412460442965544	0.784515731598663
Merged-chr12-55466470-4	chr12	55465973	55466973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26174.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.66656699590674	4.89676398312052	4.77342926529576	4.60344944905659	4.47475971854951	4.42438823021041	-0.667259305134996	0.109220064328948	0.441614418226498
Merged-chr14-20697167-4	chr14	20696661	20697661	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028428, intron 2 of 2)	intron (NM_028428, intron 2 of 2)	2193.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	4.21221843099261	4.12923076449878	4.24530898861673	4.20342877243513	4.08399449216687	3.92496840343162	-0.319690972409471	0.506010497287814	0.838243274967139
Merged-chr5-123228237-4	chr5	123227732	123228732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026000)	promoter-TSS (NM_026000)	42.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	5.60124144338001	5.6870333054388	5.17779589085901	5.64426377867624	5.58918433768955	5.47710771296447	0.0995779057792243	0.775784930815891	0.9447881648961
Merged-chr11-121720538-4	chr11	121720039	121721039	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18112.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.59315576150396	4.36979962974266	4.5177026079152	4.59956571357949	4.46803186504605	4.70312362708184	0.223004490414774	0.601831853035929	0.882147380255146
Merged-chr6-51756009-4	chr6	51755532	51756532	+	853.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	2.9006585665816	2.79321735890435	2.81432814590609	2.80338373425478	2.8704568514515	3.06436733977609	0.36869867685482	0.601027313008875	0.881855262262798
Merged-chr11-21370804-4	chr11	21370328	21371328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-199.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	7.65348278285639	7.54848731910094	7.64220768058906	7.54711166938809	7.4598368241473	7.49789374285475	-0.165177377369612	0.452563103256443	0.809456767794566
Merged-chr12-112865005-4	chr12	112864486	112865486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	5.62497837362196	4.96121002084042	5.50607099283724	5.30085698939104	5.14501034200328	5.10243767970463	-0.411645678619813	0.29593447300119	0.692718239683474
Merged-chr10-86074313-3	chr10	86073809	86074809	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 8 of 13)	intron (NM_013722, intron 8 of 13)	-21545.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	3.78096521182055	3.9828544110465	4.18196605843561	4.91159205887078	4.5772497669166	4.43692237778219	1.82184023648475	0.000207027929358731	0.0051572403034353
Merged-chr14-30622296-2	chr14	30621796	30622796	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	3912.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.13680557203309	4.15927272882092	4.45542415143543	4.71946622068378	4.279491727382	4.92202495338664	1.02830890227062	0.0331840722561507	0.222176748548588
Merged-chr3-59312141-1	chr3	59311641	59312641	+	609.0	f0_balb.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	32115.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	6.25764332446898	6.93401510208983	6.08869917572441	5.36180614281074	5.45754420179274	4.91640408717437	-2.14340399357442	1.87428345756938e-07	1.24267233416281e-05
Merged-chr4-121010596-2	chr4	121010096	121011096	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	6651.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	5.28496974306048	5.20473438576573	5.41304824388733	5.45683886828112	5.79533253546014	5.67058741182823	0.684247377438326	0.0433810483036156	0.261690990567977
Merged-chr17-5729964-5	chr17	5729442	5730442	+	933.320007	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-68715.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.44757791404982	4.33883620109845	4.39677892330766	4.42085321815684	4.06853967005556	4.09143657189057	-0.510621385594131	0.275850235631625	0.673242318833586
Merged-chr10-37232081-4	chr10	37231581	37232581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93155.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.22208403402957	7.07773963332965	7.340393638125	7.29360439942905	7.42303672773554	7.22736898157253	0.164423660547021	0.491527650693193	0.830572128647886
Merged-chr8-108817401-3	chr8	108816902	108817902	+	766.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 3 of 9)	Lx7|LINE|L1	102758.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.60236659951326	3.5930327552565	3.65677924612472	3.09695092179372	3.10763115483413	3.23722576871114	-1.95591974297856	0.00208017857213374	0.031870281463838
Merged-chr17-17624617-4	chr17	17624109	17625109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-120.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	8.20640017935585	8.44415007896303	8.40607258518924	8.09272131558015	8.40371831733059	8.45627596069387	-0.0402514746877712	0.858652215774649	0.966955810598941
Merged-chr6-86493596-4	chr6	86493084	86494084	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-5357.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	7.28657653768687	6.90795080115772	6.69455862954113	7.06882159946336	7.19353133941358	7.02696594782826	0.158409089815886	0.566157380995216	0.867230414717143
Merged-chr18-62059243-4	chr18	62058756	62059756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106181.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.32906098251425	5.19045930366856	5.26901686179583	5.71264819766266	5.50555307501608	5.62813951625255	0.678238060395416	0.0424307242119369	0.258196262997429
Merged-chr1-170709681-4	chr1	170709201	170710201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	65169.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	6.25417529232395	5.92156980739575	6.07268687657025	5.79006199580243	6.14542835569561	6.0672653638932	-0.133256929246966	0.66750933691789	0.908798300056676
Merged-chr4-86712979-4	chr4	86712482	86713482	+	724.0625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35573.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	2.35877903420558	2.4157044853006	2.6172413609208	2.23077792031027	2.30989151835902	2.24710865091675	-1.32320140094341	0.127970456985787	1
Merged-chr10-121613773-4	chr10	121613291	121614291	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12541.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	4.60757592424541	4.4958934083453	4.41212936878136	4.33944359880132	4.33476693153185	4.47944274474915	-0.335581112337983	0.43949078076793	0.801181949131056
Merged-chr2-167771218-2	chr2	167770718	167771718	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80041.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.58065170163078	6.26275733050002	6.32069531297511	6.79559724310823	6.63657355508998	6.49629674846136	0.406336403968187	0.145495314137431	0.508671180619635
Merged-chr5-66102985-4	chr5	66102479	66103479	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B4|SINE|B4	-4800.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.00598217831981	5.18845149972916	5.30114335207272	4.96757590121268	5.20874762002927	5.24188010335562	-0.0409025274306076	0.911647416952829	0.980154516820379
Merged-chr12-35051182-4	chr12	35050695	35051695	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	4006.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.54293355034879	6.51655317763647	6.386859798759	6.81065402659847	6.99779213544771	6.50475026729404	0.491761624946959	0.0772931657174728	0.366645193257564
Merged-chr14-121931161-4	chr14	121930658	121931658	+	880.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	MLT1F1|LTR|ERVL-MaLR	-15384.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	3.98515356950696	3.55935428360588	3.9344981963228	3.43513802126427	3.73586791463442	3.5491607755512	-0.860221301245524	0.146308812344177	0.510202082371576
Merged-chr1-36690796-2	chr1	36690296	36691296	+	576.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-691.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	4.79196718279391	4.59045000824204	4.92405696725895	4.94913634732525	4.7749586047416	4.60161066358166	0.0463990698128326	0.9104096874095	0.97984424692051
Merged-chr16-55661814-1	chr16	55661314	55662314	+	614.5	f0_balb.idr	Intergenic	Intergenic	160324.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.23882830993835	2.86136837387495	3.05578084188805	3.22625090917385	2.98356110709241	3.1875475397584	0.310660758705844	0.651094758644409	0.902735752871093
Merged-chr10-78244728-4	chr10	78244229	78245229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081055)	promoter-TSS (NM_001081055)	-87.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	7.09712282628343	6.89935324175379	6.77801935989303	6.91437776823903	6.82616803990766	6.69108086391178	-0.18520936705195	0.472805715577009	0.820550293768681
Merged-chr8-126495514-2	chr8	126495014	126496014	+	902.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20449.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	4.08579110521316	3.96308740993322	4.01753135509241	3.99856106018213	3.54269515472338	3.61345666039723	-0.908952720216482	0.099849427278306	0.421421592102156
Merged-chr13-119462757-4	chr13	119462275	119463275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	16.0	NM_001360805	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	6.88072293571015	7.33163656971338	7.17435094329687	7.00370054307016	7.40412787840801	7.25549644210641	0.137883681889116	0.610092916245828	0.885428451824695
Merged-chr6-72353400-2	chr6	72352900	72353900	+	761.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026696)	TTS (NM_026696)	-2083.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	3.33311099791745	3.47731742701927	3.41450038565946	3.67144842246318	3.71993336682566	3.65156807237738	0.985739129330251	0.0831535926380251	0.381505377849687
Merged-chr3-144628876-4	chr3	144628352	144629352	+	903.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58425.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	4.12341125518307	4.05155998901667	3.9942601919085	3.2693560107531	3.41773906488508	3.76987009437565	-1.9549999900882	0.00108116366308433	0.0191405561271168
Merged-chr1-170162005-4	chr1	170161507	170162507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12957.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	6.12798510138157	6.10355241816242	6.27349402300192	6.01196823758807	6.3873767446499	6.40786225330083	0.195457663744424	0.507577815221467	0.839252820186144
Merged-chr8-83442572-4	chr8	83442083	83443083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019708)	promoter-TSS (NM_019708)	79.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	4.44283733936988	4.29790287478057	4.23303897336232	4.30015866020744	4.49202153543167	4.51970505822478	0.280022196659469	0.530798542218283	0.851363932161699
Merged-chr17-23993702-4	chr17	23993198	23994198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133731, exon 6 of 6)	3' UTR (NM_133731, exon 6 of 6)	4402.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	4.96647444773459	4.66718760666543	4.64625074329208	4.87318133033076	5.35694413677019	4.79865887106497	0.600881152750696	0.160779656238158	0.533494234902646
Merged-chr14-47395848-3	chr14	47395344	47396344	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144553, exon 14 of 19)	exon (NM_144553, exon 14 of 19)	21984.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.90647325828591	4.70006014724348	4.99155052825363	3.6641652267278	3.40265234435849	3.79626883518021	-4.20124150568024	5.27290243334498e-11	7.4490265818976e-09
Merged-chr11-68467744-1	chr11	68467244	68468244	+	899.0	f0_balb.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-35275.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.16819571176114	5.29315791783442	4.82875894315313	4.57050256682471	4.35300024436655	4.51575849490733	-1.48783807495213	0.000368571307172813	0.00823967794928411
Merged-chr1-170703145-3	chr1	170702662	170703662	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58630.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	3.41275546690985	3.39064254493362	3.43474742255279	3.07386795484162	2.90786927749288	3.10943729854092	-1.71713855952999	0.0095925632077338	0.0977081649392966
Merged-chr7-24902993-4	chr7	24902490	24903490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	4.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	6.51495820482303	7.02990537080058	7.39581014848341	6.91385386878365	7.09159786897629	7.15112232875595	0.0466275938797864	0.880791550268835	0.972620786559158
Merged-chr19-10184361-3	chr19	10183812	10184812	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	1424.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	3.68225994670576	4.35804532066065	4.12869370751539	3.22707158711922	2.89748813308344	3.24858507765439	-4.43035080998275	4.40227244874286e-07	2.62772084587515e-05
Merged-chr9-32485506-3	chr9	32484996	32485996	+	880.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	MLT1G1|LTR|ERVL-MaLR	55956.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.52163697214841	3.91236362784315	3.91843512466677	3.62063723484521	3.52450385554466	3.89309915221327	-0.376348161766234	0.512098552054433	0.84167614110033
Merged-chr3-59207650-2	chr3	59207150	59208150	+	714.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028808)	TTS (NM_028808)	3232.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.99932581327938	6.98164729049814	7.09368555037409	7.03205087945716	7.36153786481897	7.04764465429762	0.21552966738266	0.390444412576747	0.769604839192826
Merged-chr4-119738834-4	chr4	119738329	119739329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75849.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.28891662462964	4.44859381355262	4.48314326050697	4.46406981003506	4.25471009738871	4.24173548142067	-0.213191177389324	0.635257986044598	0.896439353901449
Merged-chr8-125558831-4	chr8	125558330	125559330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	11033.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.39154173322921	5.81123994625121	6.05990275180813	6.23641521522822	6.09967167014043	6.36468608193014	0.19971168896169	0.531909075563685	0.851867550687707
Merged-chr5-66128115-1	chr5	66127615	66128615	+	563.0	f1_balb.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	22863.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.20853760602192	3.86599275440946	4.10730975924684	4.06261298587971	3.947961482893	4.17526904712999	-0.02468685440484	0.960598269463076	0.990386809359123
Merged-chr4-16213479-4	chr4	16212975	16213975	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	Lx8b|LINE|L1	49365.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	4.55983926139418	4.66984004710798	4.66350465633664	4.59696747140408	4.39455509352757	4.6107272741985	-0.245981094794031	0.557388447912428	0.864207623582794
Merged-chr17-13014365-2	chr17	13013865	13014865	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 4 of 4)	intron (NM_013671, intron 4 of 4)	6526.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	2.76277717786264	2.65558318566032	2.99067615726584	2.59464494966023	2.71572314309539	2.70996552508791	-0.68515029031148	0.364116390396797	0.749582018361453
Merged-chr16-55776986-3	chr16	55776482	55777482	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	45156.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.42654028162639	2.99687212165689	2.83292050780838	3.22914736854824	3.04794517829678	3.34021935717716	0.394798257283374	0.595275379063002	0.879453023580445
Merged-chr11-67579296-4	chr11	67578782	67579782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-7218.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.0852074970464	3.9855532025598	3.82919653481788	4.49939853970318	4.21270309119762	4.01110529068554	0.801999150475598	0.115467069569375	0.45366277255564
Merged-chr9-101039100-2	chr9	101038600	101039600	+	638.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4216.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	4.87119808738644	5.21512056581226	5.15756447308709	4.81110893400542	5.14254280121499	5.15667888073299	-0.0876486287747131	0.821858724597236	0.958023303204974
Merged-chr11-83578534-4	chr11	83578043	83579043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011338)	promoter-TSS (NM_011338)	93.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	6.95367218329528	6.6074190121748	7.17041567281713	6.53786361029051	6.31060452095484	6.76589832871182	-0.600693989878193	0.0442666838077102	0.264823254969037
Merged-chr2-119674993-4	chr2	119674466	119675466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030112)	promoter-TSS (NM_030112)	-102.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	7.68183397938112	7.81815719803466	7.57993128041605	7.773389036048	7.62051309272327	7.57804024376826	-0.0583196125301925	0.796529119562778	0.951430675491237
Merged-chr10-61694074-2	chr10	61693574	61694574	+	554.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358488)	TTS (NM_001358488)	-1440.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	2.66072183144705	2.72222774872732	2.97938497964151	2.63022868369953	2.72493806858495	2.99491008339265	-0.00972036588727214	0.989712887363353	0.997611022725407
Merged-chr8-104383307-2	chr8	104382807	104383807	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	12500.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.18513749459966	5.22929465444232	5.6866957649394	5.24737970749888	5.01631119294129	5.38096756976597	-0.322023697922738	0.398331534058514	0.7750530887181
Merged-chr13-119325729-4	chr13	119325213	119326213	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83298.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.4310883423894	3.34651313938682	3.45371049056072	4.01121804578161	3.75831073871961	3.58500739432782	1.38391404667668	0.01698886090846	0.14482226131512
Merged-chr5-114707775-4	chr5	114707262	114708262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029992)	promoter-TSS (NM_029992)	-17.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	5.69078039901094	5.73340439570156	5.53148467379652	5.64493331256398	5.41331512110543	5.16954450307443	-0.430264945075674	0.212537420717553	0.605079620294493
Merged-chr1-183221476-4	chr1	183220978	183221978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026866)	promoter-TSS (NM_026866)	51.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	5.01155459269396	4.87785890575768	4.69847181064511	4.98125848849258	5.01537131254003	4.39499257109306	-0.0757349286910461	0.864311092509104	0.968269312109804
Merged-chr19-55825675-3	chr19	55825200	55826200	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-69621.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.49941652799663	3.11345631067668	3.42329865179941	3.05913211733176	3.02508006853481	3.49346292752062	-0.608873933917832	0.371516999615695	0.755652770238368
Merged-chr11-3170688-2	chr11	3170187	3171187	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030207, exon 7 of 33)	exon (NM_030207, exon 7 of 33)	22776.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.05283080977234	6.39219398533765	6.44107958679597	4.38903270905301	4.01534131894744	7.1655322094078	-0.344999539045384	1	1
Merged-chr1-189689198-3	chr1	189688681	189689681	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1095.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.68114740454604	3.41875642956836	3.28264163119615	3.03151090634995	2.91231755306786	3.04896260347687	-2.16380025213087	0.00180572547064169	0.0285647918177098
Merged-chr8-61664415-3	chr8	61663939	61664939	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-73270.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.30107651983282	3.37345693973101	3.56480074442897	3.15520375963676	3.25113732538758	3.3177196016484	-0.681789247232186	0.269795317340285	0.666898246249492
Merged-chr8-84650554-2	chr8	84650054	84651054	+	613.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12298.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.41942847916881	2.34571417417124	2.69282142548944	2.39453446391915	2.12848148322518	2.64816848221855	-0.509437740371317	0.576155373360409	1
Merged-chr11-106613980-4	chr11	106613472	106614472	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	8.54688053496655	8.3632651780467	7.96545072402477	8.54070071433227	9.0695847151499	8.13728624882933	0.456834625171521	0.133328120852324	0.488425031871102
Merged-chr16-10996701-4	chr16	10996188	10997188	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-3567.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.35777748138907	3.43380709021754	3.30074657589868	3.38577143593678	2.90230227393158	3.13513007899469	-0.875354540921008	0.196890923973792	0.584754678471847
Merged-chr12-87387454-4	chr12	87386947	87387947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	908.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	6.88485404766184	7.41996313160019	7.36245568005463	7.06484716654187	7.17400208985843	7.33465659547963	-0.0750496712439589	0.782527820229094	0.94659632578755
Merged-chr11-77520226-2	chr11	77519726	77520726	+	593.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	5109.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	5.05889059191543	4.95303740617986	4.74396289642588	4.70788671718304	5.18206475808278	5.20382876720462	0.254700154295827	0.532861498222124	0.852011692079098
Merged-chr3-103773017-2	chr3	103772517	103773517	+	680.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_010432, intron 2 of 15)	intron (NM_010432, intron 2 of 15)	18258.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	5.01258474545712	5.33667254328926	5.52469281094007	5.04862617841816	5.19484600108264	4.88291058445736	-0.495350625514647	0.203306134203674	0.593172307784548
Merged-chr19-40673556-4	chr19	40673118	40674118	+	809.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	L2a|LINE|L2	13848.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.50872386465878	4.41848396479983	4.62903822389764	4.56424435142387	4.27436818090568	4.76838261574118	0.0554328396614079	0.901541499519602	0.977266678605068
Merged-chr18-62163158-2	chr18	62162658	62163658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16823.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	2.77630972462493	2.73145327330351	2.71542519322181	2.7084455057495	2.75485510515932	2.84962030980755	0.144348327842797	0.84130700805599	0.962909549034125
Merged-chr9-96322833-3	chr9	96322337	96323337	+	850.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001184710, exon 10 of 10)	3' UTR (NM_001184710, exon 10 of 10)	40878.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.43551082626976	4.69181033625082	4.55617971096744	5.53789477070849	5.6539333757484	5.51534290030017	2.13877766951835	2.61304862188115e-08	2.16560308495505e-06
Merged-chr4-15266607-1	chr4	15266107	15267107	+	610.0	f0_balb.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	787.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	6.17315889408213	6.23944475635864	6.0983231307304	5.94791634581809	5.63176127028616	5.66252847862174	-0.734187742267554	0.0159117508142651	0.138521130126948
Merged-chr19-55688780-4	chr19	55688283	55689283	+	923.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13421.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.22352924841851	5.11592088234974	5.06828074047048	5.73230486625238	5.99248288847708	5.72531942102111	1.31513370947428	9.9257762748221e-05	0.00281686218374965
Merged-chr1-166168755-2	chr1	166168255	166169255	+	608.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	38534.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.84721388826897	5.17135882261657	4.35539764157835	4.73070294278416	4.84692820848574	4.37635040932794	-0.384968742492713	0.43049576846159	0.796280802537557
Merged-chr16-20098151-4	chr16	20097662	20098662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029436, intron 1 of 7)	CpG	608.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	8.48609946349912	8.91779057219021	8.39714789587928	8.41978521240191	8.62060338209893	8.24640735522382	-0.254450310700019	0.30653958791615	0.702756468696157
Merged-chr5-30666074-2	chr5	30665574	30666574	+	779.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-812.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	7.07735336299471	7.48866659051492	6.97094201323544	7.20079387978861	7.26528773310149	6.65989528355776	-0.189310156942717	0.528408521731128	0.85053360857083
Merged-chr11-83649532-4	chr11	83649030	83650030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011337)	promoter-TSS (NM_011337)	-152.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	7.79294992377556	7.81274144810745	7.60115419136459	7.67799516276702	7.84164704556497	7.71351469351746	0.00745730041490229	0.973280265040291	0.994013566033857
Merged-chr2-113654238-3	chr2	113653746	113654746	+	957.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-30844.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.84189005527803	3.27888635740504	3.1396457187671	3.07694579099373	3.07541689007518	2.91041263466237	-0.339507927755372	0.632226677701403	0.895435008062156
Merged-chr14-118137691-4	chr14	118137176	118138176	+	914.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021434, intron 1 of 8)	intron (NM_021434, intron 1 of 8)	549.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	5.56044268983837	5.6459175924011	5.2689708581034	5.1951941488148	4.93287714016502	5.30096412315593	-0.739779353338784	0.042415187923177	0.258139478987106
Merged-chr3-89411977-4	chr3	89411481	89412481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362375)	promoter-TSS (NM_001362375)	-100.0	NR_155545	319945.0	Mm.258142	NM_177041	ENSMUSG00000042642	Flad1	A930017E24Rik|Pp591	flavin adenine dinucleotide synthetase 1	protein-coding	5.60224652683042	5.99447382987142	5.69620960653673	5.76255837750331	5.91487767757838	5.52847495219461	-0.0441360719736946	0.895531720851811	0.975665889379756
Merged-chr12-103443720-4	chr12	103443159	103444159	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281830)	promoter-TSS (NM_001281830)	21.0	NM_029803	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	4.60332931669929	4.82810746621435	4.93495715699554	5.07573432197558	4.7469370192419	4.89226073900868	0.2669044697423	0.509148562754008	0.840256821151416
Merged-chr13-37606415-2	chr13	37605915	37606915	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-219623.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.72152197226346	3.53334813735257	3.41745924040425	3.58544354043957	3.8845537433723	3.60591806399245	0.470458482800763	0.418487911287635	0.788591657834186
Merged-chr2-132115246-2	chr2	132114746	132115746	+	890.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	29862.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.24366520990538	6.34605117297978	6.28319145414718	6.54750964582329	6.5488890002278	6.30277238097529	0.305674589050796	0.262582935595448	0.660569624653103
Merged-chr2-157407786-4	chr2	157407275	157408275	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16518.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.95168412139113	3.13392734888493	3.15288559216646	3.08842373837149	2.91314197216463	3.16783466810843	-0.115742874281803	0.862762098447246	0.96809238390547
Merged-chr5-53437436-4	chr5	53436918	53437918	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118361.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	2.18712103931833	2.19180281383118	2.40094700856451	2.07318836824285	2.26821689494954	2.34962259882376	-0.176501094242726	0.842331321347523	1
Merged-chr19-40663921-4	chr19	40663402	40664402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	4132.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.45129772600979	7.46047809108056	7.32093665101144	7.07538644333699	7.41238642775065	6.70944829393116	-0.447565410765458	0.111379575606796	0.445861239636786
Merged-chr12-111047461-2	chr12	111046961	111047961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	B1_Mus1|SINE|Alu	7663.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	2.08488939709904	1.98545385967895	2.17971929421872	1.91806048535969	1.97896190776908	1.84869984610269	-1.33964164584161	0.178379733294723	1
Merged-chr2-112266391-4	chr2	112265901	112266901	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	87.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	7.49331091880672	8.01846321970468	7.57281322440956	7.80315406597091	8.27391752955995	7.47252998339878	0.259537527282352	0.389915546115511	0.769401696657453
Merged-chr14-9660088-4	chr14	9659584	9660584	+	849.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 8 of 9)	L1_Mus3|LINE|L1	-224011.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.9511662127602	3.03579605426292	2.86902100792596	2.9014164764156	2.81929501772211	3.06176950883376	-0.151939117800651	0.826811703783725	0.959278302444461
Merged-chr11-59810905-3	chr11	59810422	59811422	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	842.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	5.83830775394489	5.96571341161228	6.27799041152524	5.8124927561575	5.92006925320614	6.03665842829542	-0.186333119847386	0.550836158867119	0.86080292597632
Merged-chr19-6840071-2	chr19	6839571	6840571	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019924, intron 2 of 17)	intron (NM_019924, intron 2 of 17)	556.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	4.64349961520946	4.62434946860833	4.95646291094995	4.99131969707665	4.99542860427438	4.40689703690987	0.21538921599244	0.628701955107295	0.893843196694402
Merged-chr14-72710006-4	chr14	72709506	72710506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-3.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	7.76911755783324	7.87338330653319	7.85033362642959	7.91206245876393	7.60448463674645	7.89088232864762	-0.0375991901938874	0.868384395787742	0.969642939011354
Merged-chr11-106122158-4	chr11	106121655	106122655	+	831.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	37253.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	6.24811206764348	6.36644815765205	6.60725130101012	6.42368695638061	6.55726548981216	6.87136472048382	0.348084614879404	0.230255290280899	0.626162780047656
Merged-chr11-69514103-2	chr11	69513603	69514603	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 12 of 85)	intron (NM_001081330, intron 12 of 85)	35005.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	2.49073614004515	2.45717750807754	2.90082956337407	2.59650999893508	2.48127966210146	2.80220520240831	0.015898978202308	0.984376685465495	0.996597633599236
Merged-chr1-51934727-4	chr1	51934217	51935217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18739.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	6.02700352184565	5.9513478786825	5.89293777501746	5.81207253583759	5.6365109202627	6.06702817911517	-0.220491679607605	0.481417472849501	0.825079730294173
Merged-chr1-53743189-3	chr1	53742696	53743696	+	872.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36412.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	3.52834987518967	3.84818320011324	3.54939278359655	4.48321581711309	4.71946652446176	4.41561747683749	2.65111690928202	3.14618377011617e-06	0.000147652374023591
Merged-chr14-100224386-4	chr14	100223885	100224885	+	978.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74589.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.09822733790956	2.77733392911422	3.28031857373769	2.86863643381676	2.60038614794653	2.7764154647724	-1.57020678522272	0.0426695718810252	0.259024566796261
Merged-chr19-4000757-2	chr19	4000257	4001257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025529, exon 1 of 4)	exon (NM_025529, exon 1 of 4)	177.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	6.52787932845362	6.5831059505902	6.90703052607461	6.60543091344909	6.28904829394987	6.5956880296477	-0.283171862065717	0.320269174438774	0.714117217900186
Merged-chr5-143059488-3	chr5	143058985	143059985	+	804.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	53535.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.86959649897084	5.37238365479189	5.96130013929222	5.82666050156794	6.03636233068839	6.30253170164797	0.549250793897786	0.116086127905989	0.455026122611717
Merged-chr13-73490132-4	chr13	73489635	73490635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 3 of 13)	MTD|LTR|ERVL-MaLR	22752.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.57204212051986	5.68141951940805	5.34332045887087	5.778467726252	5.60053938797067	5.12256768987859	-0.0129224092248737	0.972199210307492	0.993868590220018
Merged-chr12-102302425-4	chr12	102301888	102302888	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	18747.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.33624624247626	5.31402649292247	5.26221324542321	5.51357027605797	5.36844150448567	5.38938702631262	0.230735624181421	0.492366988008189	0.83104217378051
Merged-chr10-84405380-3	chr10	84404907	84405907	+	684.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	35064.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.42102448905304	3.20167534101236	3.54575529104877	3.26989033422651	3.34514473085406	3.04393195437924	-0.637126055328215	0.332173049516135	0.723387053255178
Merged-chr2-60210537-4	chr2	60210033	60211033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	597.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	8.55055367506875	8.25926012780366	7.75277950419444	8.19835284569537	8.03331442325686	7.93005912387752	-0.249100658130923	0.361827544088474	0.747478680384173
Merged-chr2-101733523-2	chr2	101733038	101734038	+	984.0	f0_balb.idr|f1_balb.idr	intron (NM_001355625, intron 7 of 8)	intron (NM_001355625, intron 7 of 8)	55118.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	5.21780844089881	5.06652862417934	5.37499642205288	5.48366208552328	5.25806758959772	5.00422106026399	0.106812532924953	0.774718358901887	0.944493464665915
Merged-chr11-58225577-2	chr11	58225077	58226077	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10600.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	4.10691860632059	4.1974954164656	4.72614075328942	4.36731356818799	4.23232798530591	4.72088926452448	0.219675232214992	0.662572890751066	0.906804932599005
Merged-chr7-45125197-2	chr7	45124697	45125697	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-808.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	6.31537799629437	6.44738786287306	6.4406223830343	6.34302864292887	6.82708083783352	6.77809000722292	0.430404727613196	0.133025076051033	0.487997113484451
Merged-chr2-170320370-2	chr2	170319870	170320870	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-35991.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.8085043416985	4.76116828285133	4.6798936071348	4.93520008444422	5.15541387295197	4.8672060869849	0.547770408579233	0.160952779561926	0.533655406039239
Merged-chr17-45759042-4	chr17	45758553	45759553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	24547.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.05889413895399	4.18200078292181	4.37772787973455	3.82548665828052	3.42366873617668	3.64403405665308	-1.83084491183309	0.00111574134680739	0.019598607976599
Merged-chr15-100406273-3	chr15	100405737	100406737	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 6 of 16)	intron (NM_008732, intron 6 of 16)	16818.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	6.5364494867716	6.70231713595399	6.7951423105441	6.12756267880899	6.14420140937442	6.28302842293668	-0.809635383662435	0.00299122235070015	0.0420286439306075
Merged-chr16-45158322-4	chr16	45157812	45158812	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026402)	promoter-TSS (NM_026402)	361.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	6.11613463644598	6.53393686312454	5.96511576950395	6.26966052619926	6.41147733067493	5.97701061232125	0.00397604207210267	0.990260879990613	0.997758582642691
Merged-chr15-81926255-4	chr15	81925704	81926704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030229)	promoter-TSS (NM_030229)	9.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	4.58287731501994	4.50374162271915	4.02128630103452	4.41572101750828	4.57993652664733	4.14837128425393	0.00114815694024522	0.998180732996212	0.999590080903912
Merged-chr6-83087310-3	chr6	83086869	83087869	+	783.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010692, intron 1 of 1)	intron (NM_010692, intron 1 of 1)	1004.0	NM_010692	16815.0	Mm.20359	NM_010692	ENSMUSG00000034968	Lbx2	Lbx2h	ladybird homeobox 2	protein-coding	4.75003743812606	4.66933660113156	4.80757997208294	4.60832521570669	4.78448857414388	4.55392780668388	-0.18126208788853	0.656992615693057	0.904749317813633
Merged-chr17-36844758-2	chr17	36844239	36845239	+	647.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	L2b|LINE|L2	7593.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	5.04663064202556	4.97442879938012	5.12061802131646	5.45094684698683	5.57597061214113	4.84065345168411	0.603949262127674	0.132033918383146	0.486010983447238
Merged-chr14-21747961-4	chr14	21747450	21748450	+	896.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 1 of 7)	intron (NM_001007268, intron 1 of 7)	672.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	3.09193088101667	2.92602212935936	2.72277697919018	3.19585369366472	2.99578396073014	3.11817004337574	0.804796157261412	0.268069317452164	0.665240807694185
Merged-chr2-102975436-2	chr2	102974936	102975936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73771.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.79367694360115	5.70488638425184	5.83044490804229	6.2210625178026	6.21707534130602	5.76059612966308	0.563725550922433	0.0734177091630994	0.35604603167381
Merged-chr4-129822086-2	chr4	129821586	129822586	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	1378.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.67947359598539	6.98069072969241	6.51743178221398	7.04676405156768	7.22980612947899	6.66795583598541	0.405659345423525	0.168033534294197	0.544323041683188
Merged-chr10-37290224-4	chr10	37289720	37290720	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151294.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.03494891972761	3.91314154431427	4.00757902061363	3.86527161764889	3.67120298436603	4.02904011252528	-0.410477892114735	0.428429255701824	0.795300891260009
Merged-chr7-4499270-1	chr7	4498770	4499770	+	541.0	f1_balb.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	2410.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.05614542389257	5.79266541417479	5.50924280467038	6.02342152581263	5.90980047492488	5.74896483996505	0.151020089278839	0.649252320451081	0.902147045789438
Merged-chr4-43818993-3	chr4	43818504	43819504	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	2429.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	4.11513868739961	4.44712442353864	4.12362126833287	3.98359851258328	4.00327575228175	4.23815005674581	-0.483504548199346	0.325540837364868	0.718159390122652
Merged-chr5-124328662-2	chr5	124328162	124329162	+	958.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277867)	promoter-TSS (NM_001277867)	573.0	NM_001134717	72650.0	Mm.121658	NM_028310	ENSMUSG00000047635	2810006K23Rik	-	RIKEN cDNA 2810006K23 gene	protein-coding	4.81851392221596	5.24510082495798	5.17330794158019	5.12883631933349	5.39415040600584	5.10244526352584	0.274934791273895	0.475195909642917	0.821758256966855
Merged-chr9-116093079-2	chr9	116092579	116093579	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	82284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.47218335200657	2.36311029035136	2.67069574606999	2.26882518180167	2.15199485002022	2.56478193050492	-1.08175784996344	0.226608090164976	1
Merged-chr12-73325652-1	chr12	73325152	73326152	+	543.0	f1_balb.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	38804.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.52983743446697	2.38819901356211	2.76433035833794	2.61401472532998	2.35081768696471	2.53185091326767	-0.373466840337985	0.649379480429604	1
Merged-chr11-103419821-4	chr11	103419335	103420335	+	918.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7171.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.93474935477505	6.78259938967271	7.11611077645707	7.23484986579165	7.34892939676771	6.85782872829535	0.347313116649367	0.198723260432382	0.587160238692855
Merged-chr5-88595684-4	chr5	88595121	88596121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	12108.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.18353772553541	7.22396152684124	7.0673715909144	7.27559313036948	7.3396499080749	7.04454241232396	0.105006559312993	0.664748102061022	0.907721942545399
Merged-chr1-171713582-4	chr1	171713039	171714039	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31547.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	6.76920443140974	7.02619721292487	6.39095812793907	6.02774313940172	6.2764476690743	6.48845479689124	-0.791870531108489	0.011097555807543	0.108214601838242
Merged-chr2-58567289-4	chr2	58566786	58567786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	-48.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.2377422828835	5.03013243362442	5.37559290637823	5.28760140748906	4.68868362153445	5.16432945503237	-0.314881263473732	0.438351240440771	0.800490069452335
Merged-chr16-11015445-2	chr16	11014945	11015945	+	648.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040518)	TTS (NR_040518)	6547.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	3.8055676140588	3.68723776521249	3.65418081431452	3.68422714785375	3.56005115498956	3.87599167780921	-0.0525073760079231	0.923672921596997	0.982727549942016
Merged-chr5-135478294-4	chr5	135477880	135478880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B3|SINE|B2	66742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	7.81972689166783	7.66556149795031	7.54918233173908	7.467662611835	7.92755758375632	7.7711465965477	0.0767318910537178	0.756111726023629	0.939527320894303
Merged-chr15-31600052-2	chr15	31599552	31600552	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	1487.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	3.12293362450663	2.98610201842081	2.89558148058807	3.11399680071895	3.02655327209886	3.15143381878942	0.387548500172546	0.563360109116189	0.865926383742263
Merged-chr4-132513619-4	chr4	132513137	132514137	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3181.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	6.51760615098064	6.46244020561283	6.29724512690354	6.52579308154741	6.77918547178203	6.1633271596501	0.155355944444372	0.606639794325598	0.884244059153911
Merged-chr6-119481526-2	chr6	119481026	119482026	+	787.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1858.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	4.88784920445291	4.73806205162591	4.96248866036806	5.07074995977965	5.21825868824082	4.83992863456855	0.443225489760873	0.25412338909926	0.651179145391095
Merged-chr14-70949699-4	chr14	70949191	70950191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	59584.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	6.09541759247186	5.83629187841246	6.32603386500709	5.93841631552326	5.90858523634303	6.15522509197424	-0.160031606695743	0.610143644172701	0.885428451824695
Merged-chr6-114293573-4	chr6	114293072	114294072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	10937.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	5.9084904833052	5.88295364033289	5.71807012016746	6.10635778476953	5.76899273620011	5.38336439085051	-0.0837540884714212	0.810484511167015	0.955054272231421
Merged-chr10-81649041-4	chr10	81648534	81649534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142963)	promoter-TSS (NM_001142963)	-35.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	6.13620413731631	6.09162541483789	5.54372075754298	6.02675348130704	6.02169134380847	5.63905729347901	-0.0814598466910785	0.813929702445401	0.955984497572397
Merged-chr19-6067166-4	chr19	6066662	6067662	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081041)	TTS (NM_001081041)	688.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	4.48576589663091	4.76544669285483	5.22031314413257	4.64164540177033	4.51670711090001	4.91202059600364	-0.357459261747169	0.434863878212047	0.798660466628143
Merged-chr8-71538680-2	chr8	71538180	71539180	+	726.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1243.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	5.90026552238607	5.78601576298708	5.49488710095183	6.02777578666814	6.36462542593422	6.08862314001177	0.74108831311865	0.0209638816794152	0.16657397505546
Merged-chr13-64313373-2	chr13	64312877	64313877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-667.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	4.25970510109687	4.51128498967194	4.28521756589601	4.33575124977539	4.45487892123965	4.48406594722051	0.162788972673365	0.71551188892868	0.926402055104375
Merged-chr19-41329108-3	chr19	41328654	41329654	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 4 of 16)	intron (NM_031376, intron 4 of 16)	55916.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.84951558353779	4.23632513810827	4.27969780908885	4.14816992975115	4.37362814786223	4.5872880744497	0.659737021151484	0.186463887737063	0.571038204837541
Merged-chr5-62756018-4	chr5	62755508	62756508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	10169.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.26303829508294	4.19265504781345	3.65705366361377	3.86585860579263	4.13453245182374	4.05815549056801	-0.134721798120468	0.807935939673898	0.954583809755663
Merged-chr16-4913858-4	chr16	4913337	4914337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 5 of 17)	B3|SINE|B2	-25274.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	7.93310201389546	8.02914049103251	7.97099281548886	7.95937343236621	8.11780868305244	7.74819399051254	-0.0287059396093035	0.898454997978383	0.976355113798855
Merged-chr19-10947417-4	chr19	10946871	10947871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	1895.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	7.22835019388947	7.40852653893803	7.34583627880752	7.63721538008463	7.7574581249996	7.43580713258573	0.431654667084169	0.067046697496425	0.338479650848351
Merged-chr13-23684817-4	chr13	23684308	23685308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	609.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	7.80102670569546	8.13093721648548	7.80822947634097	7.7090891702272	8.25195943372328	7.77848228936181	0.0268820535915124	0.918869408296545	0.981844538421417
Merged-chr10-14189295-4	chr10	14188794	14189794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	222915.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.73178262595001	4.16312860373455	4.44831601121362	4.856588706834	4.49810678635352	4.72198186759808	0.542575828621552	0.244059941234251	0.641229541844635
Merged-chr2-33908568-3	chr2	33908068	33909068	+	962.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20622.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.98815759864345	3.82335813356878	3.93328992984994	4.00644813986572	3.69374330038126	3.85232013132993	-0.195422370170803	0.707984274499724	0.923606271223831
Merged-chr17-63864372-4	chr17	63863881	63864881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	CpG	400.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	7.68362195541302	7.76092335147302	7.45054377696513	7.89554167169685	7.94558567338462	7.92519371712628	0.397239994227625	0.0763690513490392	0.363884557329832
Merged-chr12-40569737-1	chr12	40569237	40570237	+	568.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123684.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.75164133975929	6.12179063438084	5.67474733296971	5.13736689910651	4.89970994987265	5.39609615308286	-1.3994376183479	0.000133055572182974	0.00360873958577033
Merged-chr8-77423838-2	chr8	77423338	77424338	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-93218.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	5.47320959892469	5.59589163048466	5.39357113141091	5.41955517449286	5.56324019890457	5.15517376998834	-0.174408720656515	0.617464246875963	0.888810836054056
Merged-chr19-6910502-1	chr19	6910002	6911002	+	1000.0	f0_balb.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-396.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	8.17091703466226	8.02217425907215	7.85338246275206	8.05035749660258	8.19372913265482	7.88471542123857	0.0397774643373539	0.862179048990522	0.967996224966109
Merged-chr9-71485766-7	chr9	71485216	71486216	+	993.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164793)	promoter-TSS (NM_001164793)	267.0	NM_178602	28015.0	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	7.82511285266268	8.18699404639029	7.94382198677436	7.94889996624706	7.55280328075741	7.63515000035566	-0.389762567807189	0.114767942044592	0.452297801443559
Merged-chr8-13601775-2	chr8	13601275	13602275	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-39314.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	5.7513368851794	5.94407179416113	5.94788617078481	5.74434390604026	5.73830354604839	5.79255746106872	-0.224148063557344	0.461413653549915	0.814992635038861
Merged-chr5-141018474-4	chr5	141017969	141018969	+	950.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17873.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	4.75183191260416	4.5233145518097	5.09002257603772	5.12882972765232	4.57232938017302	4.92008890549123	0.202611699984357	0.649186500440404	0.902118776529041
Merged-chr3-116486682-2	chr3	116486156	116487156	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	21519.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	3.73042778003981	3.91331782877272	4.08879707936553	4.24364654202646	4.34281009935567	4.29247390807832	1.11290796698875	0.0235163127344784	0.179781821941426
Merged-chr7-27545235-4	chr7	27544723	27545723	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011116, exon 2 of 14)	5' UTR (NM_011116, exon 2 of 14)	7995.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	5.19749370844988	5.56218105015131	5.26835086687418	4.97285535006233	5.30652596823378	5.59004147603844	-0.0994651643362888	0.796563630629525	0.951430675491237
Merged-chr5-31192420-2	chr5	31191959	31192959	+	862.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153680)	promoter-TSS (NM_153680)	680.0	NM_001127355	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	4.89120852938696	5.16803445860802	5.43126846721379	5.07973370376456	5.22163620959989	5.02496783335638	-0.110791701304684	0.774189725934508	0.944321484608801
Merged-chr17-27858276-4	chr17	27857753	27858753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	RSINE1|SINE|B4	1746.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	6.63773414592929	6.17078906643576	6.14919921726408	7.14928504622539	7.0620924714759	6.65056163601093	0.9915576948901	0.00126233394250614	0.0215851962777009
Merged-chr14-120911683-4	chr14	120911170	120912170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023579, intron 1 of 25)	CpG	476.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	7.08005554079685	7.27230664357931	6.91115226685851	7.05916223110719	6.86921889670746	6.95511423298888	-0.21729659784853	0.391790867299612	0.77074421294513
Merged-chr1-86401190-2	chr1	86400690	86401690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11829.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	3.34001447900046	3.22757811327109	3.54459560180403	3.22626093562553	3.30132647720158	3.17567772636815	-0.526225680260793	0.401684681361712	0.777748903350594
Merged-chr2-144263777-2	chr2	144263277	144264277	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	Lx9|LINE|L1	2425.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	5.24681544588983	5.47469898827546	5.53084962264898	5.15451110228938	5.36950791601267	5.16891042506992	-0.348831319201331	0.324548959020567	0.717544999689449
Merged-chr4-126198912-2	chr4	126198412	126199412	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	2095.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.85365497848672	3.89089106401943	3.82739283293521	4.40655113690476	4.39682116067777	4.25068055128479	1.43471638307247	0.00307446328606993	0.0428868300263717
Merged-chr11-118355339-4	chr11	118354838	118355838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	73.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.90576126767733	6.04089482431049	6.03368082340084	5.99078561588933	5.81054205513189	5.95802054464361	-0.133804169956513	0.651202385199668	0.90274227832685
Merged-chr9-20869356-3	chr9	20868879	20869879	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175687, exon 2 of 8)	exon (NM_175687, exon 2 of 8)	737.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	5.32421283658325	5.49950073977492	5.69471086197247	5.45907898056424	5.16707213396241	5.24379847372005	-0.414900420575149	0.240736069256992	0.637793066855662
Merged-chr14-70889224-3	chr14	70888786	70889786	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-821.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.53933880559129	4.74526236120855	4.87819326010814	4.25714491285111	3.99299741385989	4.4577156185422	-1.24688838233683	0.00742063266357533	0.0815554091494883
Merged-chr2-90547994-3	chr2	90547496	90548496	+	584.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	32651.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.20122151683255	5.10777225313128	4.92777514071829	5.42566376119402	5.43897255169856	5.65319111873729	0.816401243250229	0.0218336242196102	0.171212157578487
Merged-chr1-127982222-3	chr1	127981694	127982694	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	B4A|SINE|B4	113421.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	5.58784332486633	5.56744586180818	5.38050689602362	5.65876516229939	5.578860132978	5.38055752778194	0.0545359423847224	0.86950664425955	0.969798920359083
Merged-chr6-113326757-4	chr6	113326230	113327230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-246.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	6.51294329084566	6.59801722551972	6.48440813352921	6.43585841047999	6.5979709096841	6.629396729455	0.0328852410196318	0.900181920163968	0.976728292075907
Merged-chr5-143403839-4	chr5	143403359	143404359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025841)	promoter-TSS (NM_025841)	39.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	6.35523352967965	6.72109536195091	6.48984883846737	6.50407123066399	6.23972767510684	6.26065282292898	-0.315359728248357	0.271235546331522	0.668493724068427
Merged-chr18-23878325-2	chr18	23877825	23878825	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	74355.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.14020788456528	2.83521703057707	3.12872371435998	3.24040971539991	2.99375233277157	3.31242426648752	0.629447689137302	0.358985731789516	0.745252981980042
Merged-chr9-111070804-4	chr9	111070306	111071306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13288.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.01299158812367	2.87883010562524	2.84931471267709	2.67286711955347	2.60732723171121	2.60160319661338	-1.59586006554054	0.0365780011714076	0.235352793185159
Merged-chr15-5108257-2	chr15	5107757	5108757	+	621.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163138, exon 2 of 4)	exon (NM_001163138, exon 2 of 4)	276.0	NM_001163138	239319.0	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	4.54459970690725	4.51553863685639	4.68314245412337	5.18814903609524	4.71830207358018	4.789426771161	0.779691801328128	0.063821247498699	0.329145801529177
Merged-chr11-100394805-2	chr11	100394305	100395305	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2985.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	4.40007631828765	4.29223272077452	4.23475743142402	4.24595171404362	4.00056556317651	4.30275255194956	-0.36663775877635	0.434402424737648	0.798410009305253
Merged-chr7-118170364-4	chr7	118169862	118170862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40737.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	6.81563125736782	6.59766597771595	6.71597546877808	6.60277003986102	6.93015186391888	6.82032926050261	0.130120785045273	0.622995046493003	0.891251075175817
Merged-chr3-27656942-4	chr3	27656441	27657441	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	53511.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	3.79913805217402	3.82286891968556	3.85883043068267	4.01200306178128	3.71495058390618	3.87815025808916	0.140848972465004	0.787036902118426	0.948693859994902
Merged-chr18-67973869-4	chr18	67973379	67974379	+	899.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	40706.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.19846025249322	4.54875316206226	4.04758022709455	3.75122387606344	3.74437993892691	3.96708112093306	-1.40882973352553	0.00717101588078839	0.0795475122528517
Merged-chr8-125771365-4	chr8	125770875	125771875	+	909.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 27 of 33)	intron (NM_175561, intron 27 of 33)	37172.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	3.02939222071828	2.83890439973869	2.76697094684662	2.94990530434811	2.81151309952431	2.96476048462264	0.0965782280691878	0.89195058076132	0.974942585822634
Merged-chr12-72084735-1	chr12	72084235	72085235	+	772.0	f0_balb.idr	exon (NM_026038, exon 1 of 5)	exon (NM_026038, exon 1 of 5)	578.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	5.99665466457043	6.19884421181641	6.13097579176154	6.02274919701667	6.14132342561509	5.69859282836258	-0.221965900109214	0.473634731585576	0.820993116047837
Merged-chr9-77931069-4	chr9	77930598	77931598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	13733.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	5.49312909527396	5.31828243862536	5.30296140841262	5.42101091710707	5.19116993799417	5.20232703053494	-0.202666561627729	0.560703565357363	0.865261302076164
Merged-chr19-6301131-2	chr19	6300631	6301631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5326.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	4.90653788555404	4.84646775895638	5.06667206127047	4.60611779317742	4.49565152462507	4.53678504327676	-0.912853677195324	0.0238391696152043	0.181449837663915
Merged-chr15-101252775-4	chr15	101252290	101253290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-14056.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.89070651577312	6.72653478859752	6.91300715068007	7.52750513598956	7.6321000832765	7.44460540394488	1.04832935057397	9.80270493262772e-06	0.000393850058925199
Merged-chr3-27218817-4	chr3	27218312	27219312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	35808.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.31571607190019	6.22816682646857	6.07766899074649	6.27639657206354	6.11469201416382	6.1822728523922	-0.0459132641933083	0.871176026462215	0.970222087171093
Merged-chr2-31124367-2	chr2	31123867	31124867	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	B1_Mur1|SINE|Alu	17641.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.88599899483686	5.00375148178608	5.47072499663229	4.72999059956882	4.92593440127758	5.10116888889581	-0.447694065607571	0.278407972949615	0.675623815920472
Merged-chr12-3905796-2	chr12	3905296	3906296	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14052.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.09481867358918	5.64579703082566	5.25985681097258	5.2309776247459	5.2471025521343	5.32379289615947	-0.193657144572916	0.604099222251757	0.882977174248604
Merged-chr6-125482491-2	chr6	125481991	125482991	+	913.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12269.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.04134969019904	4.58103522520846	4.8223997491463	5.82315907847385	5.78801057353611	5.57137797728983	1.81929320477184	1.40286651085422e-06	7.29560728969735e-05
Merged-chr9-60998806-2	chr9	60998306	60999306	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18263.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.73948918133212	3.76060741004642	3.60735150533632	3.92365863336239	3.67313864726897	3.62310039197301	0.131573327734709	0.810317586777095	0.955030259072015
Merged-chr19-17255734-4	chr19	17255228	17256228	+	916.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83777.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.86397241168656	4.98128555086054	5.2122624275552	4.77338081628148	4.62760100996313	4.59929642083296	-0.785362007585289	0.050659740223091	0.286683804112393
Merged-chr13-95870202-3	chr13	95869695	95870695	+	845.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	21727.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.97268047851085	3.78638509372753	4.07833355811897	4.7731272282086	4.7400482523793	4.51973937274061	2.0304622473496	1.78999030799184e-05	0.000663732235059646
Merged-chr1-88304738-2	chr1	88304238	88305238	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1974.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.61671509393709	3.71070550142461	4.00095649255805	3.61572504957475	3.73246102884891	4.02377659627366	0.0541021094777319	0.922759533364293	0.982621045978137
Merged-chr15-97348654-4	chr15	97348178	97349178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-101391.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	6.29907906447109	6.0603512467992	6.13851085770094	6.32777603669762	6.37798822925683	6.22049670130649	0.240825722291636	0.392480100150229	0.771172125304963
Merged-chr4-45455314-3	chr4	45454809	45455809	+	990.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-46543.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	5.35611676553039	5.4933007813875	5.44633447350977	5.02345943350274	5.04458659168037	4.90944282594588	-0.883690063227938	0.0128316052664978	0.119844226177433
Merged-chr3-130786310-2	chr3	130785810	130786810	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-55912.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	2.50869618206408	2.47622577599225	2.79934347651711	2.65839078851359	2.63822668623201	2.75339662549926	0.479576729595272	0.535079227102031	1
Merged-chr8-70374738-4	chr8	70374226	70375226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 3 of 18)	CpG	1178.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	5.16957633156421	4.88703659490341	5.48103409463854	5.04968485565159	4.63678281742921	4.73495791921791	-0.803206389637406	0.0568970091260394	0.30754101178118
Merged-chr19-9895703-2	chr19	9895162	9896162	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	3871.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	3.93505260918401	3.81164756101739	4.21556522729575	3.77763196904151	3.52923500641988	4.15690279704699	-0.473477696949419	0.40728154917742	0.781419523604339
Merged-chr2-90461130-2	chr2	90460630	90461630	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 7 of 23)	intron (NM_008982, intron 7 of 23)	18044.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.59868279518724	2.52863597662113	2.90967658026402	2.5663320609948	2.87669892351953	2.74610967165355	0.284819816386135	0.717285757411488	0.927005250411664
Merged-chr1-87653279-1	chr1	87652779	87653779	+	542.0	f0_balb.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32967.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.21847266469201	5.92858456388089	6.31252083106736	6.25576949778733	6.31690570202037	6.03598019630028	0.103120587193754	0.730941016210706	0.93121032683938
Merged-chr19-24999926-1	chr19	24999426	25000426	+	720.0	f1_balb.idr	intron (NM_028785, intron 1 of 47)	CpG	397.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	7.30668277016643	7.26940520106638	7.39375499551664	7.23916032446259	7.13924869892545	7.26510355043769	-0.16297344236301	0.479257378258118	0.824147972184708
Merged-chr19-42157903-3	chr19	42157366	42158366	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10477.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	3.52074173369192	3.51455099680351	3.28657544429643	3.04367949391154	3.1129476604198	3.35864459072602	-1.13906785776071	0.0771380239197838	0.36612290766741
Merged-chr1-132388918-3	chr1	132388416	132389416	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	1402.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.42364145979927	5.10904338060573	5.68178650085615	5.22174100068612	5.12163423425471	5.39993215774696	-0.337193340269878	0.368634804626674	0.753571908443924
Merged-chr19-56722856-4	chr19	56722363	56723363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.76768488512945	7.79199981641111	7.92831646914132	7.92304075846331	7.73473709442316	7.79351931939429	-0.0130649262974012	0.952331215361807	0.989068549972429
Merged-chr15-59815695-2	chr15	59815195	59816195	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20736.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.58537675148387	3.87963909388016	3.92280170099996	3.99652468160588	4.09385130533881	3.73225135427573	0.486437643783857	0.370342218996392	0.75474381832158
Merged-chr10-60278714-4	chr10	60278269	60279269	+	913.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	1141.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.55761708856937	8.1237527862869	7.60238857438114	8.1569443178474	8.21839859051666	7.33835260682596	0.25313511885323	0.428142550104773	0.794938610086088
Merged-chr17-57029907-4	chr17	57029474	57030474	+	748.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	1533.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	3.31573540991636	3.26437653522846	3.47540998899215	3.78149750986805	3.58442540340541	3.43433073158344	0.976145947594523	0.100809835909531	0.423453219564857
Merged-chr9-99242288-4	chr9	99241800	99242800	+	784.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	4.20863999206445	4.39630624654142	4.18046222660431	4.55448198021639	4.33236671248599	4.15115323917397	0.240169462726184	0.608793651421867	0.885030699504005
Merged-chr3-106548391-4	chr3	106547904	106548904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-602.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	8.19316709207186	8.30180494391902	7.96819603167455	8.12146093849018	8.48585443297245	7.78880175368688	0.0114182175080178	0.965721419555735	0.99204066600196
Merged-chr4-119422823-4	chr4	119422328	119423328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	144.0	NM_001014900	332934.0	Mm.388911	NM_001014900	ENSMUSG00000070806	Zmynd12	AI414736	zinc finger, MYND domain containing 12	protein-coding	5.96434622659365	6.55620034859738	6.36875468185892	6.24506892612067	6.18676941731384	5.76930182563036	-0.381069366771158	0.254262386200636	0.651270631028434
Merged-chr2-27288583-2	chr2	27288083	27289083	+	612.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 12 of 29)	intron (NR_133905, intron 12 of 29)	-41280.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	2.63121690737425	2.46332893193735	2.64513038146012	2.30898059015587	2.23014955872906	2.46984505661041	-1.63592585751488	0.0579718017739201	1
Merged-chr7-96546139-4	chr7	96545639	96546639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204175.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	4.95322751138281	5.12484652856163	4.72981109810896	4.19899988726519	4.09420802453351	3.93151075541774	-2.22315667588492	3.24096101540047e-06	0.000151757953950164
Merged-chr1-132338159-4	chr1	132337652	132338652	+	651.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22027.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	3.28591162119765	3.17472459934791	3.28658170066808	3.35068401928926	3.32523253398006	3.41340175621629	0.454005831177117	0.453300348340258	0.809745581877009
Merged-chr13-60735360-2	chr13	60734827	60735827	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	51037.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.19761224730798	3.43109110522784	3.67703572951161	3.46569423957085	3.17902172801974	3.49471968594428	-0.23116916256585	0.715821432129754	0.92647595514209
Merged-chr1-60096751-3	chr1	60096281	60097281	+	746.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021312, intron 1 of 12)	MTD|LTR|ERVL-MaLR	1126.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	3.99660514035741	3.8999496046319	4.2341422896332	4.16215680384645	4.23537329428066	4.16747778598332	0.429491758695589	0.374371588792198	0.758058822552447
Merged-chr13-93195080-2	chr13	93194580	93195580	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-2663.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	3.2910615323891	3.15150329340119	3.23378087668062	3.3167549892352	3.52131254736199	3.36362997605012	0.725843256420782	0.237281214022646	0.633672456067794
Merged-chr14-19707164-2	chr14	19706664	19707664	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44093.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.26510406449881	4.15880693940654	4.23619265696364	3.84283551590776	3.85773232526246	4.34512043898608	-0.560860492278398	0.272033990550382	0.669528049151568
Merged-chr17-5559892-2	chr17	5559392	5560392	+	711.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67292.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.8276917358081	3.9744657586921	4.21898138305919	3.62023988268271	3.49852116398717	3.98331050240297	-0.97133970248533	0.0856586351836161	0.38758530903906
Merged-chr4-132951253-4	chr4	132950790	132951790	+	828.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22805.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.22519079717867	5.73482472665983	5.77551569393176	5.58382087863528	5.68068970365131	6.21452138897283	0.45372559525819	0.231525094962107	0.627475086365937
Merged-chr16-37597541-4	chr16	37597034	37598034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027778, intron 3 of 12)	intron (NR_027778, intron 3 of 12)	17381.0	NM_013547	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	4.30661968740104	4.11599530743229	4.23912304884529	4.76875336018872	4.38782511228209	4.10923398290534	0.609838733042307	0.212430490685331	0.604945969025121
Merged-chr4-101198529-4	chr4	101198041	101199041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	B1F2|SINE|Alu	66741.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.42260994678996	4.29578967238315	4.50753950563484	4.1723718948729	4.0606891481501	4.23477640167532	-0.692636217815693	0.131311150381293	0.484421999597722
Merged-chr6-39230878-4	chr6	39230392	39231392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-24119.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	7.15848830067159	6.61510004049118	6.97617810920749	6.64279098984955	6.4939401145959	6.91349073531247	-0.387953211797042	0.18549065117966	0.569615666642943
Merged-chr2-90499711-2	chr2	90499211	90500211	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B3A|SINE|B2	-20537.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.88305878232793	4.08238922910049	4.60563145709413	4.40684852587227	4.22181068240789	4.67039449995089	0.582146954881038	0.266724977176207	0.664182310365939
Merged-chr5-64818570-3	chr5	64818110	64819110	+	886.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 2 of 5)	intron (NM_008453, intron 2 of 5)	15087.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.43516519226476	4.48098937056241	4.54188439084088	4.30230236824622	4.1858513629063	4.06555641976527	-0.772210952150405	0.0892551259553009	0.396875996392277
Merged-chr9-32521561-4	chr9	32521053	32522053	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	L2b|LINE|L2	19899.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.85874183754645	6.63213484562368	6.68017915908613	6.56857636201702	6.77619121936299	6.41947716499828	-0.191406033604551	0.481640106121256	0.825159653544888
Merged-chr18-23869143-4	chr18	23868653	23869653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65183.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	8.08037185373366	8.36554308755636	7.83167020073636	7.69084363583396	8.13716832071802	7.35227674579312	-0.478060116441342	0.105000089864974	0.432306361005943
Merged-chr6-97284654-1	chr6	97284154	97285154	+	632.0	f1_c57bl6.idr	Intergenic	Intergenic	-31874.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.09513197103368	2.95561143655068	3.1452815967706	3.09356259180803	3.10856254279001	3.37713070861771	0.568867785814671	0.387256471554377	0.767521055786785
Merged-chr13-12257224-4	chr13	12256732	12257732	+	917.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	881.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	7.69898410476639	8.06585401756409	7.38153118763078	7.90561380887131	8.32244125420867	7.67152436065335	0.354582428002308	0.229805596602575	0.625507516290642
Merged-chr2-144290957-2	chr2	144290457	144291457	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	20053.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	4.11964906316221	4.08418724206943	4.30585768324774	3.95229811167077	4.08163518924946	4.4110580379711	-0.0391604991038574	0.936769945909463	0.986037792257163
Merged-chr9-118680176-2	chr9	118679651	118680651	+	860.1142580000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-31541.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.12603285530084	3.01356277583873	3.26935744938479	2.76060875043222	2.84224771317427	3.06493131111668	-1.16568880588454	0.0994728389969174	0.420576015612577
Merged-chr4-59871102-4	chr4	59870669	59871669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	43887.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	6.18293265611957	5.96671391039936	5.80857209124095	5.80212845685422	5.59225021344099	5.89499510549709	-0.437480803985946	0.168881908371783	0.545531802905646
Merged-chr7-128344630-5	chr7	128344097	128345097	+	675.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46466.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	2.91749331486293	2.77999428514819	2.91737462648825	2.6801361230493	2.58269712312095	2.81094485657484	-0.97915129745531	0.186475460314461	0.571038204837541
Merged-chr2-22814240-2	chr2	22813740	22814740	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	Lx8|LINE|L1	39913.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.35378670976241	4.44865400955252	4.86521169033664	4.50096503465789	4.48294988228066	4.4365012965028	-0.215612079470344	0.631909379205323	0.895343044391181
Merged-chr16-57487931-4	chr16	57487426	57488426	+	952.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-61316.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.35962564516808	5.78460294779482	5.91713794163996	5.06224833964511	5.14927505203827	5.40165415379114	-0.962429908264254	0.00917407286401718	0.0948268639588995
Merged-chr9-20870265-2	chr9	20869765	20870765	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175687, intron 3 of 7)	intron (NM_175687, intron 3 of 7)	1623.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	2.67601669121892	2.59936901864821	2.97951469382669	2.67178418306458	2.41967312984802	2.93976707927218	-0.347794334120193	0.670135729794578	0.909902643594322
Merged-chr13-119613225-6	chr13	119612693	119613693	+	868.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10626.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.76300038676647	3.83724022828435	4.20830190499156	3.56244836390928	3.53721780101262	4.1093403950939	-0.594220175794535	0.313545367084669	0.708121563861612
Merged-chr17-34308300-4	chr17	34307847	34308847	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	2480.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.56342711875197	4.45330948695717	4.07822667995729	4.57569516326399	4.6412862844925	4.44574027052623	0.419088667578208	0.36570628786036	0.750755886042233
Merged-chr11-95854000-2	chr11	95853543	95854543	+	839.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	4.46370159461302	4.26084537810851	4.30612722053481	4.24964569116009	4.32947633112957	4.50123121743366	0.0262012724332345	0.953616616091968	0.989446911725587
Merged-chr10-81525238-3	chr10	81524727	81525727	+	860.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1002.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	5.06766084582152	5.23102125752678	5.80088854036775	5.45606963269935	5.67019365881232	5.59069756182139	0.354693571466657	0.353904517557542	0.741027381084777
Merged-chr15-97705757-4	chr15	97705230	97706230	+	889.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028003)	promoter-TSS (NM_028003)	92.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.3699014545735	4.18278789977203	4.52965378687769	4.25220861138334	3.84659697473647	4.35467891079928	-0.552238095858981	0.270607497024489	0.667629387731657
Merged-chr3-54736275-2	chr3	54735815	54736815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027148)	promoter-TSS (NM_027148)	776.0	NM_025442	66248.0	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	4.4341794417459	4.79830030811711	5.08670779769068	4.89475177699489	5.01023582014627	5.05326799819155	0.437192454536487	0.301259810933314	0.697953538576553
Merged-chr2-35336398-3	chr2	35335946	35336946	+	869.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	563.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.93702896637098	6.9850561668028	7.11811079688352	7.01210539282219	7.16983819689104	7.08813494885794	0.127149340632483	0.597611219047707	0.880433364120803
Merged-chr2-32260082-4	chr2	32259563	32260563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	42.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	7.59720582745256	7.42976230361072	7.13552273504423	7.61123290784082	7.85606957167093	7.09780565746406	0.237801142838301	0.418204919910645	0.788549735859192
Merged-chr6-42376372-4	chr6	42375894	42376894	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045169, intron 2 of 3)	intron (NR_045169, intron 2 of 3)	-3126.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	3.05255955690515	3.05515609651789	3.17750265769819	2.97485790439391	2.91558316584526	3.01977347368534	-0.583912239432192	0.380031167929808	0.762279329390436
Merged-chr4-126820103-4	chr4	126819597	126820597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	66327.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	6.15671517970216	6.38449772855671	6.35375708063875	6.08258495103483	6.47646779006187	6.44988821356533	0.0818226988198762	0.780120207434586	0.945949149660645
Merged-chr10-127668946-4	chr10	127668441	127669441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045171)	TTS (NR_045171)	1818.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	6.66056823639002	6.33551299715455	6.42481580078092	6.72551865736957	7.09956233230618	7.07922315188242	0.776905300271857	0.00526791724742395	0.063471308763923
Merged-chr18-32437200-2	chr18	32436700	32437700	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-58916.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.05482773088706	3.0718951177045	3.37852683625929	3.19888076524411	3.06655819025551	3.49921353736811	0.371387734455753	0.577175946271423	0.872052152406896
Merged-chr16-93914042-4	chr16	93913532	93914532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15535.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	5.9760840982848	6.05711159034906	6.02748928581914	7.99382904356585	8.24685179959928	7.80922215346955	3.0867855692488	1.8826243053755e-31	1.56649403201685e-27
Merged-chr5-143732478-4	chr5	143731962	143732962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029749)	promoter-TSS (NM_029749)	-182.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	7.0998699585677	6.69112768481835	7.0837446837906	6.8972271609231	6.75237239623993	6.83087683073984	-0.218629977552893	0.412711575423566	0.784565767944438
Merged-chr11-78177096-2	chr11	78176596	78177596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080849)	promoter-TSS (NM_080849)	-430.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	6.76248419638746	6.37299257735398	6.18761126153922	6.65595276951893	7.00008608156755	6.68975902959836	0.51122768615691	0.0912229046554693	0.401931450917251
Merged-chr12-108761423-4	chr12	108760914	108761914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31897.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.90508930437673	7.42554295291572	7.29397045906529	7.08425099130559	7.39783208635992	7.04511215701475	-0.050581645995325	0.854870154445294	0.966038421653227
Merged-chr7-80830616-4	chr7	80830087	80831087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27256.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.37239323129021	6.97288504753315	6.9777813323529	7.21657510724782	7.57946602891946	7.34779982473523	0.398384435906378	0.135122763650001	0.491294119824757
Merged-chr14-73444207-2	chr14	73443707	73444707	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58918.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.87111955899262	5.2653177476399	5.4320291900836	4.82239016491088	5.15865645944557	5.26477109427343	-0.227460363182439	0.573217517942618	0.869962295500663
Merged-chr3-41574895-2	chr3	41574395	41575395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	10015.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.46829485379407	5.42452760876386	5.48958476548706	5.42763953774951	5.75945411967066	5.12973658602152	0.047823967184168	0.896177965271214	0.975793383188212
Merged-chr9-107587591-4	chr9	107587085	107588085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025903)	promoter-TSS (NM_025903)	-133.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	5.56647397093659	5.18861253233121	5.37329751462129	6.07799792797261	6.20266690557734	5.43881099689201	1.04827982091775	0.00501947101883828	0.0613935241122293
Merged-chr3-103841128-3	chr3	103840624	103841624	+	744.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	RLTR45|LTR|ERVK	8428.0	NM_001142960	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	3.94864757306736	4.00473957807673	4.38665053662239	4.50378555239963	4.0765147390964	4.37040689513901	0.567037831419597	0.258962896364301	0.656570729664304
Merged-chr12-112645615-2	chr12	112645115	112646115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161737, intron 1 of 2)	intron (NM_001161737, intron 1 of 2)	787.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	4.47487080408475	4.64824069218531	4.49525007976481	4.61736764842064	4.67922768537769	4.51946789263641	0.163794719400622	0.695948803980573	0.919291538728398
Merged-chr4-34388808-4	chr4	34388338	34389338	+	870.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-161777.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.94613956870632	6.94628881683689	6.76923410183542	6.56524478114147	6.82683676512605	6.54261272993077	-0.363724458743807	0.166347081497794	0.541593980223501
Merged-chr9-118649209-2	chr9	118648709	118649709	+	924.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	42500.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.94993686779795	6.76436642902215	6.99683375645935	6.77442603150484	6.80451046927371	6.84739717165116	-0.147509489263387	0.554562603048164	0.862860336482883
Merged-chr11-89084837-3	chr11	89084345	89085345	+	731.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	intron (NM_001033266, intron 2 of 3)	11004.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	2.40261695830695	2.2072335965326	2.41128893936122	2.24717649060641	2.14108467344334	2.1589381693454	-1.13948539337929	0.198921700541867	1
Merged-chr18-14706440-2	chr18	14705940	14706940	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360823, intron 1 of 5)	intron (NM_001360823, intron 1 of 5)	289.0	NM_001360823	73677.0	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	4.20707279213307	4.38316385642503	4.1285569308828	4.07020933428134	4.4281577766305	4.1491543753893	-0.0384502727771189	0.936653038079244	0.986037792257163
Merged-chr5-45493363-4	chr5	45492856	45493856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-18.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	6.27088179993681	6.56438056716427	5.81540263054901	6.44038202405137	6.57496103366059	6.08695809505425	0.205935790910754	0.545538940504984	0.858209810368924
Merged-chr2-5538953-2	chr2	5538532	5539532	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	137014.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.91339402846467	2.80718170974158	2.94993281274127	3.02761617060618	2.80906014157141	2.83936576140987	0.0304184772406589	0.96541032028696	0.991934874361747
Merged-chr4-43031428-4	chr4	43030919	43031919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023231)	promoter-TSS (NM_023231)	-35.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	7.08949093248791	7.07771919470737	6.58038466519706	6.82753763031287	6.75187451925422	6.60348718388859	-0.33292585173534	0.233755026858895	0.630070886779232
Merged-chr9-53696080-1	chr9	53695580	53696580	+	647.0	f0_balb.idr	intron (NM_175562, intron 1 of 1)	PB1D7|SINE|Alu	10152.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	3.86177412908116	3.60618343383922	3.86455246625342	3.53150293897206	3.52648222974846	3.57671236781979	-0.815601221069189	0.14374606900916	0.506064011428568
Merged-chr11-43426249-4	chr11	43425766	43426766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013917)	promoter-TSS (NM_013917)	-18.0	NM_001131054	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	6.36982415216735	6.52909847563654	6.4930675466221	6.84616985990104	7.07187134379624	6.88934081184523	0.754379311373292	0.00349472283924593	0.0471142090097173
Merged-chr5-34334535-4	chr5	34334033	34335033	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1717.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	5.48265921931572	5.0769267075861	5.33551168722179	5.62951817692376	5.82573278449645	6.05680054677817	1.00219734416778	0.00436485136310669	0.0555847187360547
Merged-chr19-46507344-2	chr19	46506844	46507844	+	681.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	5696.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.60287646251725	5.94544449130428	6.11362943992231	6.03797648956501	5.89163740122363	5.83314535652611	0.0525938229567058	0.870507379256017	0.970084781962666
Merged-chr7-97172367-4	chr7	97171864	97172864	+	884.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90613.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.97295494441509	6.65884067038528	6.44423394911805	6.71289502148052	7.09395975649679	6.71856541816252	0.222849796568291	0.448498387626229	0.80725470300829
Merged-chr18-78809017-4	chr18	78808522	78809522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-212072.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	4.09434311757481	4.45007820332935	4.50253005947203	4.74251437535528	4.492974643412	4.44199101352829	0.530719564275883	0.247352685297945	0.644265503899033
Merged-chr1-170305183-3	chr1	170304677	170305677	+	890.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198955, intron 1 of 2)	intron (NM_001198955, intron 1 of 2)	1155.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	3.17289472623125	3.18371666369652	3.04140576130307	2.63612838625445	2.74237649038347	3.22650944329398	-1.13966316256074	0.150172112822613	0.517027522498509
Merged-chr12-85570028-4	chr12	85569560	85570560	+	885.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29045.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	2.88461901119092	2.94381841996369	2.6661975087612	2.91856574005728	2.78131748128044	2.93218230431608	0.167140660290839	0.818701154416441	0.957045316896364
Merged-chr11-120579090-2	chr11	120578590	120579590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	2530.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	2.9485227440271	2.99971451874442	3.00642937465803	3.23718362279706	3.09246004996339	3.35876363042066	1.09803620306828	0.0968049344567838	0.414770871736835
Merged-chr17-45554985-4	chr17	45554480	45555480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-720.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	5.78968465497169	5.19934324538673	5.02796026977894	5.45874955509489	5.56436922074744	5.344270874101	0.13038427565488	0.742962338265726	0.935417543785804
Merged-chr9-25252504-4	chr9	25252001	25253001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	62.0	NM_001205367	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	8.26627571937673	8.37696228524287	7.95531826789194	8.22598450066806	8.1163711642419	7.96406169809744	-0.15311200568749	0.510379861551136	0.840886591313675
Merged-chr3-27709693-2	chr3	27709193	27710193	+	867.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	759.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	6.48937181445255	6.56269443465296	6.08863456767817	6.46400635351143	6.22241706978026	6.45861349528837	-0.0464677269271651	0.875288058726919	0.970953455305683
Merged-chr19-42515553-4	chr19	42515059	42516059	+	898.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3246.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	4.05980094665366	4.1834005029972	4.39304306249105	4.09870293176788	3.96033329853293	4.64581460176937	0.121660854502883	0.815395786992236	0.956370078970016
Merged-chr16-76054499-3	chr16	76053964	76054964	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53680.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	4.2302482738602	4.00715350215473	4.1773402807929	3.79100347194625	4.04065562700958	3.9621342597024	-0.589311747322504	0.240882219246273	0.637887190711426
Merged-chr19-25036966-3	chr19	25036458	25037458	+	714.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	37429.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.96385634675589	3.80875126249192	4.06746605595338	4.62882715641573	4.79158856028731	4.50800808878316	1.94698658720995	3.74261155725149e-05	0.00124046323866427
Merged-chr18-38993038-4	chr18	38992542	38993542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-103.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.29436033925207	5.35579739116033	5.13038630346956	5.14459954957255	4.741014169521	4.39409592372792	-0.980949259049064	0.0249846000334528	0.18689583229544
Merged-chr1-85986984-4	chr1	85986501	85987501	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25946.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	5.43832687685795	5.23838678350316	5.36286754350373	6.02412478032586	6.27823683967533	5.7799144040778	1.29324561169389	0.000102676667461007	0.0029000407827887
Merged-chr16-52185111-4	chr16	52184618	52185618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 14 of 17)	intron (NM_001033238, intron 14 of 17)	153569.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.24832195066016	4.07943945766203	4.07335291147169	4.55104446346344	4.44358747714691	4.38069822288936	0.859352398637576	0.0599095105983261	0.316866930960178
Merged-chr1-172528874-4	chr1	172528370	172529370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 2 of 11)	intron (NM_027972, intron 2 of 11)	7740.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	2.43093918903202	2.51611894163195	2.24468931335564	2.62993709455756	2.29285050310477	2.5901628020966	0.643879511742675	0.463495469427313	1
Merged-chr2-36236115-2	chr2	36235615	36236615	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	5689.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.29756038833931	6.14129636996022	6.45571850851031	6.66516080294016	6.65716477266375	6.36522243449184	0.458326672934942	0.103017576106937	0.427949767396425
Merged-chr4-134496745-4	chr4	134496224	134497224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285847)	promoter-TSS (NM_001285847)	-37.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	7.22694361760413	7.04104019845069	7.01798010649021	6.93880799212497	6.85428596912956	6.39782192016694	-0.517679128954644	0.0622691239302142	0.324235873841381
Merged-chr11-69111962-2	chr11	69111462	69112462	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-8491.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	2.86417459922841	2.55571365107953	2.80463138523827	2.5245211460676	2.51290894297278	2.63476347094669	-1.10931179316955	0.158567055228229	1
Merged-chr17-35301983-7	chr17	35301469	35302469	+	929.585693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18578.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	4.86577492976301	4.98731822890286	4.55795114443849	4.59409063169316	4.62703994757617	4.39603146801103	-0.646627892560884	0.132264653671673	0.486472939164237
Merged-chr7-117481077-1	chr7	117480577	117481577	+	543.0	f0_balb.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100098.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	2.98731139774786	3.30317535512242	3.19691047772217	2.62807641559837	2.82285694099386	2.98186533763261	-1.72853011953479	0.0236120764574172	0.18019936328247
Merged-chr12-86024619-3	chr12	86024105	86025105	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	54436.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	2.63115727175829	2.59592506781837	2.82689110708607	2.74309983267412	2.88290435086262	2.77838931548656	0.651321179843527	0.378175496705552	0.760506544479555
Merged-chr13-63431285-4	chr13	63430800	63431800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347515, intron 1 of 15)	(CCCCG)n|Simple_repeat|Simple_repeat	445.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	6.87705810341451	7.15031951257463	7.10700459066584	6.93024503961388	7.32660306158126	7.13984969961238	0.149173789562838	0.56676314042307	0.867615258730988
Merged-chr14-101560814-4	chr14	101560324	101561324	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	48367.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.56899606607985	5.85230856618073	5.67283384293318	5.819560908153	5.89494884704164	5.40592544213151	0.0581204551684769	0.864203757243169	0.968269312109804
Merged-chr6-108569628-4	chr6	108569130	108570130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53537.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.42092193409683	4.49895778366339	4.55862291777136	4.45099386477934	4.40241308917011	4.54402675481969	-0.072803542836917	0.864481100481549	0.968282137207473
Merged-chr6-72101566-2	chr6	72101066	72102066	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3958.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	6.68439948433456	6.95387913433559	6.59693672241018	6.89476702444108	6.9438762521757	6.08614812566475	-0.0743620618118552	0.82435748010415	0.958540206882422
Merged-chr13-60604687-2	chr13	60604187	60605187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1A2|LTR|ERVL-MaLR	2476.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.86775011931064	5.20197883122405	5.52912937849776	5.00424770149095	5.11103825577429	5.05751165616103	-0.323957269133324	0.414454446538593	0.785828006486374
Merged-chr10-117859107-4	chr10	117858597	117859597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-13123.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.44782857896665	7.378271612299	7.02681612209288	7.58367390386046	7.89882773568801	7.18082968230353	0.43132143506831	0.134750114962306	0.490659614455871
Merged-chr17-7877560-4	chr17	7877070	7878070	+	945.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48430.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	4.51483900373578	4.52172765177905	4.97903170849915	4.42720128287661	4.66892941732042	4.7701970005357	-0.11976920550415	0.786991010655876	0.948693859994902
Merged-chr6-11926247-4	chr6	11925722	11926722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029404, exon 1 of 17)	5' UTR (NM_029404, exon 1 of 17)	341.0	NM_001168382	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	6.67056741686358	6.94795627016483	7.0873079534652	7.05156672618074	6.6595266816248	6.78997688268483	-0.100656165817731	0.71659215193287	0.926721682566796
Merged-chr4-108460323-2	chr4	108459823	108460823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	CpG-10127	897.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	8.33916710613963	8.45269227077403	8.16548892836684	8.52327365523715	8.56820105799568	8.26770181028811	0.188848730724097	0.393282003482452	0.771515439837752
Merged-chr8-36251671-4	chr8	36251191	36252191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2175.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.97134415484924	7.17874255795445	6.93616521461061	6.28635733441229	6.13670083754235	6.22887869958713	-1.3093442728253	6.91938342360666e-07	3.90867655065488e-05
Merged-chr7-139272518-2	chr7	139272019	139273019	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24037.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.72007365103625	3.65039322636931	4.16961978607463	3.57687675619325	3.4710335024228	3.79286513778188	-0.811711927878702	0.162752962224017	0.536188662408322
Merged-chr11-33932842-6	chr11	33932288	33933288	+	849.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	-30225.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	4.66949171893759	5.02284407933322	4.78162685386017	4.61699971161721	4.4460482049668	4.73258891386235	-0.570080097488554	0.174444423596846	0.553697180951608
Merged-chr7-128392492-4	chr7	128391979	128392979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25693.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	8.11116653845542	8.0576960900385	7.90335141305677	7.92323493794991	8.07051878160015	7.99028606365445	-0.0472667413298699	0.825449627185894	0.958821343666982
Merged-chr3-96057916-4	chr3	96057430	96058430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013841, exon 1 of 15)	5' UTR (NM_013841, exon 1 of 15)	525.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	6.4866905322679	6.66619561277737	6.78157862624797	6.36180252088853	6.62336272020823	6.52008037560469	-0.215125987360926	0.42936642229304	0.795682190695026
Merged-chr13-52188810-4	chr13	52188300	52189300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92059.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.92361455211944	4.89683127992732	4.99712395223298	4.94986000858177	4.46682433026888	5.12649337871848	-0.162099544916874	0.703561308018241	0.922108924938678
Merged-chr13-113444678-4	chr13	113444197	113445197	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	58147.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.868969100247	3.72846724665378	3.72776240919473	3.90583145011071	3.62275679231529	3.57771375024605	-0.219241476458492	0.689859524533684	0.917495512399022
Merged-chr1-130715885-5	chr1	130715400	130716400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-79.0	NR_027859	18640.0	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	7.10497665888524	7.39881559996598	7.16951192372752	7.29124667781488	7.29182081485988	6.91402629996912	-0.0707490718062551	0.784811328198585	0.947770123968912
Merged-chr8-117370569-5	chr8	117370071	117371071	+	842.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	21401.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.14806761189056	4.26960876697175	4.38122284318579	4.05294412593421	3.86365336795289	4.5250697207102	-0.275962081987484	0.592649230795806	0.878142077122388
Merged-chr9-57759501-3	chr9	57758985	57759985	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 3 of 12)	intron (NM_007713, intron 3 of 12)	6375.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	2.63788895205447	2.38039449093486	2.22860502564262	2.44112473161499	2.27777081898704	2.63564220642591	0.178945900012624	0.841903780809177	1
Merged-chr19-8802376-4	chr19	8801879	8802879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098237)	promoter-TSS (NM_001098237)	-117.0	NM_133759	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	5.89198720362033	5.92431925153755	6.60029721919676	6.33441553243127	6.17229713297448	6.24345266370587	0.13672356434178	0.684139079264777	0.915773756389094
Merged-chr12-110601387-4	chr12	110600874	110601874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030238)	promoter-TSS (NM_030238)	-21.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	7.54214960889597	7.9977501526768	7.42210879038182	7.48739805138692	7.5970748578956	7.91910522825242	-0.0135459769640204	0.960603088424013	0.990386809359123
Merged-chr10-81265760-2	chr10	81265260	81266260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025317, exon 2 of 3)	exon (NM_025317, exon 2 of 3)	1166.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	3.80949060584752	3.62339085257256	3.58042790651688	3.70214485430384	3.74387812577348	3.65188023277792	0.0787084461997575	0.885499097600429	0.973632007873161
Merged-chr18-39240625-1	chr18	39240125	39241125	+	562.0	f0_balb.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246620.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.34451502167624	4.21980052982909	4.12763419012809	4.12572409358402	4.02655865155957	4.10004501772699	-0.441638891761122	0.349685608060722	0.737704147134326
Merged-chr17-71221628-4	chr17	71221136	71222136	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	16982.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.61248948159132	4.56880449232564	4.67700015407547	4.48915768684496	4.20736802606909	4.70469175065945	-0.367412665093135	0.408664905884238	0.782226990150116
Merged-chr7-110221269-3	chr7	110220779	110221779	+	921.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-424.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	6.13972752047283	6.1646702057051	6.42396654562537	6.13687317308294	6.44868275985007	6.31727618838508	0.120161402884143	0.678985613952972	0.913553914280182
Merged-chr9-90112571-4	chr9	90112086	90113086	+	766.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	2234.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	6.08676383949434	6.23336718618824	6.43103982821182	6.70207275641614	6.8667513412201	6.69387094864139	0.827461983521161	0.00240429953367316	0.0356036582306239
Merged-chr5-69592184-4	chr5	69591679	69592679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359239, intron 1 of 6)	CpG	125.0	NM_001347363	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	5.10359996878357	5.05230873976239	4.90078207842287	5.19568697135621	5.06494638960307	4.88937433913976	0.0720809615291812	0.84786469139756	0.964318271116593
Merged-chr17-42837312-4	chr17	42836819	42837819	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 4 of 17)	intron (NM_009847, intron 4 of 17)	39105.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.41138466720362	4.59777760132339	4.45869668248631	4.90521183220354	4.75145405438429	4.81241257949136	0.776226750613331	0.0593368644962175	0.315462678959384
Merged-chr15-8444109-1	chr15	8443609	8444609	+	1000.0	f0_balb.idr	intron (NM_201232, intron 1 of 45)	CpG	354.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	8.34331565103098	8.48331024103464	8.30817445568339	8.41922526771627	8.24311479591343	8.55754570950181	0.0362278496026428	0.866614975427068	0.969114221403526
Merged-chr11-11687812-4	chr11	11687318	11688318	+	723.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	1893.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	6.22307434406862	6.4201308981934	6.16350351460921	6.34255405365398	6.62167753364081	6.60222999698719	0.405420786829831	0.15014536012091	0.516968653402835
Merged-chr11-103389916-4	chr11	103389438	103390438	+	973.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 4 of 11)	L1M2|LINE|L1	22726.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	5.90968047477633	5.8917720279244	5.70865936932079	5.75767114915467	5.58650901480962	5.79677958129446	-0.249058003993082	0.423480576064761	0.792050429285735
Merged-chr13-99006784-4	chr13	99006307	99007307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22242.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	7.2964005441556	7.18945860993825	6.92144196990584	7.57892968309081	7.49215999564665	7.02387596214274	0.361581672811465	0.187242886136933	0.572185054142865
Merged-chr6-114260750-2	chr6	114260250	114261250	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21885.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	2.38928224288446	2.32111102982449	2.2010332886541	2.41278963980144	2.47130211269183	2.60485791231931	1.18827320912644	0.166120074135792	1
Merged-chr4-150869943-1	chr4	150869443	150870443	+	668.0	f0_balb.idr	Intergenic	L2|LINE|L2	14873.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	3.44065894325823	3.88774344571311	3.36354739142389	3.25887899826798	3.28218817350993	3.19135243275645	-1.326197482597	0.0406739573935418	0.251478573844689
Merged-chr17-5809360-2	chr17	5808860	5809860	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9870.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	2.10394891594101	2.07504132723838	2.31283602715117	2.28779287849752	2.04137856677025	2.05405685621025	-0.229091880782603	0.802758895621392	1
Merged-chr2-31079688-2	chr2	31079188	31080188	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	16812.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	2.37566278901367	2.53257375859648	2.33594514210457	2.51857062378416	2.34040659727517	2.72232347251574	0.679240117236849	0.420244114346728	1
Merged-chr4-53028543-3	chr4	53028043	53029043	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16663.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.29389562390972	2.61863288264898	2.57439370026359	2.34270500246856	2.09100653106962	2.3281187181237	-1.69232848442671	0.0691852903400164	1
Merged-chr11-97687540-2	chr11	97687040	97688040	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085500, intron 2 of 2)	intron (NM_001085500, intron 2 of 2)	1588.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	2.54343013107003	2.47136944594382	2.7004896834729	2.75036594693587	2.36594400847623	2.71317663696704	0.260605940671306	0.747795859520141	1
Merged-chr17-24454802-4	chr17	24454321	24455321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125990, intron 1 of 13)	CpG	571.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	8.04771194539677	8.46114394170005	7.90806891945587	7.73359823145735	7.99621456820002	7.70585192545267	-0.487827007405728	0.056986711946879	0.307805928443746
Merged-chr10-83647634-2	chr10	83647134	83648134	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	(CAAA)n|Simple_repeat|Simple_repeat	1030.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	5.35594147472299	5.34728933255893	5.36321689260502	5.07318817519922	5.22727708479477	4.91092958977613	-0.537503172811293	0.136097381627899	0.492999618268348
Merged-chr1-187215441-4	chr1	187214950	187215950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	-4.0	NM_029067	74717.0	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	7.04659721648832	7.24650509556384	7.30923316129124	7.32529584186295	7.46525044738426	7.39893184748957	0.294257623194945	0.213037037091064	0.605719657689159
Merged-chr17-83703827-2	chr17	83703327	83704327	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-2336.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.93059686059243	5.08218383192859	5.42788968894236	5.12450501751675	5.34853832730214	5.15705491420895	0.142224575399216	0.708143954855806	0.923620645882265
Merged-chr2-139919986-4	chr2	139919471	139920471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110352, intron 9 of 12)	intron (NR_110352, intron 9 of 12)	146834.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	3.82749802863784	3.73329725103427	3.85748045165569	3.80379211909354	3.78841016367144	3.66715748685794	-0.149455933294783	0.776449667353422	0.944848107887676
Merged-chr2-4570864-3	chr2	4570369	4571369	+	830.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	11115.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.55298137764521	5.47354098505452	5.45271113950124	5.80338077972503	5.99862953202441	5.71710525860597	0.658568212625799	0.0386500932307931	0.243746927205384
Merged-chr17-80728632-4	chr17	80728107	80729107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-582.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	6.32201297701385	5.99576519742722	6.17820099272774	6.33273582783159	5.9767889023377	6.01778489228466	-0.0895767035473935	0.76943721774709	0.943125565788486
Merged-chr8-116314824-4	chr8	116314304	116315304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190211.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.64165400317357	6.65659906612049	6.92155758025623	6.972197009765	7.02389235366623	6.97966588445407	0.396698242020029	0.114966594567195	0.4526422069058
Merged-chr5-114372311-1	chr5	114371811	114372811	+	547.0	f1_c57bl6.idr	intron (NM_001159941, intron 2 of 6)	intron (NM_001159941, intron 2 of 6)	8194.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	2.90772393155315	2.76089594708244	3.23793014670788	2.66827345655098	2.47441463455279	2.98564220722045	-1.2980090898568	0.113966436273846	0.450859089500984
Merged-chr16-4080908-2	chr16	4080408	4081408	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3098.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	3.06885902022027	3.34602213237986	3.29962900100828	3.24077600764109	3.39999290530326	3.58226418883871	0.660416457227662	0.296843353128646	0.693481812817709
Merged-chr1-53785204-4	chr1	53784716	53785716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133810)	promoter-TSS (NM_133810)	-1.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	7.65198806808324	7.78946730452012	7.50384421372053	7.67998567420214	7.66045176503865	7.45585146413542	-0.0750793771633435	0.746182872948357	0.936287949695029
Merged-chr13-60730592-2	chr13	60730092	60731092	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 16 of 26)	intron (NM_134062, intron 16 of 26)	55772.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.58393857897764	2.61535085522017	3.16522078370903	2.55043908353556	2.50185803190218	2.73753480501097	-1.12999589102739	0.167466397867387	0.543354082120217
Merged-chr6-122653281-4	chr6	122652771	122653771	+	963.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26847.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.97020820074918	6.81795251406669	7.12949329429986	7.11784128339054	7.28807272671663	7.17501931446231	0.344235629882498	0.163180453087656	0.536867626448843
Merged-chr12-38864874-3	chr12	38864377	38865377	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	81166.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.00417946358557	4.64924392075419	4.98215906910995	5.10010183312502	4.55264634231674	5.26755654073778	0.245860610344644	0.578102518071396	0.87232748170547
Merged-chr10-80604228-1	chr10	80603728	80604728	+	631.0	f0_balb.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1346.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	5.25170788131881	5.28409564746685	5.39632896351811	5.30122279533634	5.20284404955475	5.21096028261994	-0.13745626929145	0.689666110990052	0.917452521435358
Merged-chr1-82795495-4	chr1	82794998	82795998	+	803.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27042.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	4.99501795684262	4.90365355532429	4.50460848885296	4.84988104787572	4.83985934759599	4.70602196971602	-0.0604681732999262	0.884577926064769	0.973520091950339
Merged-chr9-63124759-2	chr9	63124259	63125259	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22221.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	5.8109397262154	5.61728905698383	5.76886502882527	5.49488541601282	5.20308468191049	5.65267245339101	-0.534169840473026	0.11649261593093	0.455679603553968
Merged-chr15-51735251-2	chr15	51734751	51735751	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	130210.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.30382533814691	3.19213434810952	3.27180203332895	3.07255518323882	3.17257344466989	3.28707401784417	-0.330759921165264	0.599446128656107	0.881015869879314
Merged-chr19-6294022-2	chr19	6293522	6294522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12435.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	7.19504176439167	6.6922876737262	7.05451393590612	6.64129795250381	6.97467983589242	6.7130313470911	-0.318604799585366	0.262707284346429	0.660713340071636
Merged-chr19-47147955-4	chr19	47147457	47148457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	6.75503619592155	6.75568440565316	6.18100534711037	7.11237963644469	7.29166080090956	6.50334717556566	0.649166860406363	0.0528103425285845	0.29413077784976
Merged-chr13-41574070-3	chr13	41573594	41574594	+	642.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-32122.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.41885182310557	3.55607200791232	3.47434395945803	3.69423330456461	3.73980574475392	3.85823827975615	0.964619990877719	0.0836929550823418	0.38282729916423
Merged-chr2-83941003-4	chr2	83940507	83941507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027964, intron 1 of 8)	intron (NM_027964, intron 1 of 8)	219.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	2.38530747524662	2.46954870884846	2.63975148400101	2.20757434383855	2.39095285833405	2.27704368937138	-1.32946031353015	0.131468793624491	1
Merged-chr3-37477831-2	chr3	37477331	37478331	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	57881.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	3.18158011722059	3.32905883012683	3.02205608263636	3.10862655999424	3.25115149474662	3.33138138531759	0.174161558845008	0.789638660730943	0.949278919326382
Merged-chr8-117361690-3	chr8	117361181	117362181	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12511.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.38142853573033	4.48868915532702	4.18137752492586	4.41676227877115	4.44817099739345	4.34605899191116	0.107391871769839	0.810924023102056	0.955096593239846
Merged-chr1-37308187-4	chr1	37307689	37308689	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8351.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.99396020948496	5.01958457155461	5.35546933276214	5.20034554052564	5.32027800847043	5.29904926216942	0.317154120052373	0.383112346685527	0.764535004943228
Merged-chr12-3745609-4	chr12	3745112	3746112	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61368.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.04621904997864	5.9271328893403	5.92819428532308	5.80662132380128	6.18267789494851	5.64563369559232	-0.0934247577396343	0.774244034738876	0.944373884349474
Merged-chr12-85615740-3	chr12	85615243	85616243	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	15725.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.27638249923042	3.4649373761975	3.65023757792122	3.78694795618496	3.54791174137256	3.66886964420293	0.726329009482556	0.214550064705521	0.607668896284207
Merged-chr6-54008973-4	chr6	54008499	54009499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	30308.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	5.72067874391081	5.69676357336531	5.99458321328729	6.29441727413715	6.44820329976826	6.24784417133567	0.927591573824104	0.00166628226436921	0.0268229860037983
Merged-chr3-81139815-2	chr3	81139315	81140315	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 2 of 6)	URR1B|DNA|hAT-Charlie	103399.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.90602239511611	3.74586882873015	3.72908563232818	3.53221913695887	3.37133847198616	3.34936322472694	-1.3567500013138	0.0192819853685526	0.15758731949616
Merged-chr16-92400206-4	chr16	92399701	92400701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019466)	promoter-TSS (NM_019466)	-123.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.94900237916274	8.08269004239632	7.60809457095338	7.57797250853551	7.90929393540701	7.61598629993046	-0.267462562704065	0.288980882959439	0.686465721973535
Merged-chr10-52417464-4	chr10	52416972	52417972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030250)	promoter-TSS (NM_030250)	-75.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	8.0015927676311	8.05286816734445	7.7863812071275	7.81003319427916	7.65164100993902	7.76533590017384	-0.308915048614756	0.164656583330652	0.539208350811795
Merged-chr8-121585575-4	chr8	121585071	121586071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4897.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	6.54490381174037	6.70461976805203	6.70337030378157	6.59042216751822	6.78338183878766	6.96275697348247	0.206673264466715	0.436062046826128	0.799451274848915
Merged-chr15-80949973-2	chr15	80949473	80950473	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009634, intron 1 of 12)	B3|SINE|B2	1483.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	4.06141911981317	3.89483822701425	4.06084455313795	4.01873163828213	3.80639343045751	4.12877584925774	-0.0693568209169737	0.890809388716967	0.974581703799143
Merged-chr13-65278726-4	chr13	65278219	65279219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178364)	promoter-TSS (NM_178364)	-135.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	5.85989161530164	5.80011765336029	6.20969759494046	5.93217130379725	5.99268899143514	6.37922413949186	0.257138920538782	0.42704347377517	0.794007717328485
Merged-chr4-16163874-4	chr4	16163344	16164344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329751)	promoter-TSS (NM_001329751)	-201.0	NR_138102	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	6.63415668805937	6.07056186757239	6.71608666410229	6.52368159452179	6.48832437700937	6.44409820995196	-0.0178759648045541	0.953626029279315	0.989446911725587
Merged-chr2-36216677-4	chr2	36216184	36217184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-13742.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.43546093015043	6.26970376924236	6.64266338863939	7.31945789389186	7.10913169331707	6.82861146716497	1.02653840174828	0.000238911396357049	0.00578223951951056
Merged-chr5-3199105-4	chr5	3198621	3199621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144772.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.79138219603776	6.07691025684198	5.36874284321303	5.36063665455869	5.13929922329554	5.66790858097157	-0.735125990502225	0.0543319632888216	0.29933483422739
Merged-chr19-32794100-2	chr19	32793600	32794600	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	36523.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.24662749559761	4.30509698457269	4.14922078805205	4.49420833875774	4.42005261637219	4.35868586942505	0.494063797272105	0.269635964023007	0.666781659962742
Merged-chr14-118181012-4	chr14	118180520	118181520	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43893.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	5.45337639296712	5.77689772067069	5.38370187011983	5.25032375699992	5.43704034582217	5.53597126706667	-0.285209640171038	0.414796669033673	0.786025990365609
Merged-chr15-84235498-2	chr15	84234999	84235999	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3456.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	7.42287643898761	7.55228358297271	7.41202242725553	7.40178684175261	7.51840795872892	7.53026724164357	0.0260357695474306	0.908006155221144	0.979100266360983
Merged-chr9-62828154-2	chr9	62827654	62828654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10633.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	5.30697314434123	5.21795249476877	5.00624781333281	5.05535508013139	5.19843333487665	4.75156817357977	-0.33416640356028	0.391292234711914	0.770316284913563
Merged-chr6-97473285-2	chr6	97472785	97473785	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-13999.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.84510263469761	4.5015605655929	4.70625621595758	4.88458264679533	4.54917266962775	5.17256107855345	0.441830850344642	0.318223831095165	0.71198624731827
Merged-chr15-59615100-4	chr15	59614595	59615595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33559.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.48140114749483	7.39260281727393	7.36067302129304	7.07096685096821	7.31237809637161	7.31890696670428	-0.25994759215457	0.269965857903488	0.666963156307406
Merged-chr4-139598164-1	chr4	139597664	139598664	+	678.0	f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	23444.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	5.34964594180177	5.23789100575752	5.12394040780679	5.42336735123906	5.68853480209664	5.35805758917864	0.512529698843165	0.144043510548232	0.506679870421043
Merged-chr19-46761423-4	chr19	46760943	46761943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-166.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	7.89676949609906	8.3627916888385	7.98968459741695	7.94039921227176	7.92467470232325	7.72430353318294	-0.331416369076673	0.173371386753184	0.552165901743817
Merged-chr10-128604109-2	chr10	128603609	128604609	+	737.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14608.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	3.54217140668375	3.336242973413	3.88784491114534	3.73379975501845	3.61094797443719	3.66393408141659	0.241652541705937	0.681866111907836	0.914901722830768
Merged-chr4-130360044-4	chr4	130359519	130360519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153160)	promoter-TSS (NM_153160)	-27.0	NM_153160	619605.0	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	6.25694169326993	6.54044257020907	6.85535624943614	6.63646387774065	6.53134958896531	6.69556690250709	0.088049701264471	0.762857349146777	0.941663714620562
Merged-chr11-116379758-4	chr11	116379263	116380263	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	33269.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.97407051437287	4.14739505197424	4.27247015241202	4.71744547729712	4.31632699734393	4.38553311095005	0.942768820437913	0.0471087065559159	0.274805191748783
Merged-chr16-23103046-2	chr16	23102546	23103546	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4422.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	2.93542278897805	3.08971640792692	2.75296551375613	3.10998120753193	3.17430791874261	3.20265490606756	1.00073352380103	0.160549590935713	0.533208683746259
Merged-chr3-97226620-2	chr3	97226120	97227120	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 1 of 9)	intron (NM_029933, intron 1 of 9)	744.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.25370006026647	3.25130601328421	3.30866226173113	3.194980416575	3.07969212575193	3.48524234622046	-0.0599691359163355	0.924984161723772	0.983085374624298
Merged-chr18-69667429-4	chr18	69666922	69667922	+	855.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258137.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	5.43936221205239	5.40945307566423	5.30400213899138	5.34371837033876	5.4039440677556	5.75424991011564	0.216426542333676	0.532361737601408	0.851971173271146
Merged-chr9-61978002-3	chr9	61977494	61978494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	-31195.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	6.72382131997665	6.72142679106788	6.87909920975937	6.97936468917441	7.01178859954633	6.86511605897801	0.289145002050746	0.241809392827056	0.638862793574907
Merged-chr2-52891318-4	chr2	52890825	52891825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MLT1F|LTR|ERVL-MaLR	33457.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.29361517272004	5.35241804878599	5.18749340938214	4.92071132188034	4.98483499670085	4.93402843011607	-0.701580085745625	0.0518118980352473	0.290571734889923
Merged-chr7-106235496-2	chr7	106234996	106235996	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20156.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	2.51404985792346	2.67239764383406	2.54358230530449	2.79367491379058	3.1388063597992	3.1734925297207	2.52490836131615	0.00243253864090118	0.0359386852329732
Merged-chr1-156041611-1	chr1	156041111	156042111	+	772.0	f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	PB1D9|SINE|Alu	750.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	6.1670386287631	6.22342908112934	5.8679273020074	6.5078735821508	6.45760487548046	6.12732809783573	0.461016329121837	0.126298964620187	0.47525891975109
Merged-chr5-65491911-4	chr5	65491419	65492419	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	916.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	8.01884802116091	8.25258158786242	7.9961303140907	8.0488674179615	8.31029813631976	8.0447131521174	0.0673954421989217	0.766069888383632	0.942366894267556
Merged-chr6-34879111-2	chr6	34878611	34879611	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	4.00278065241791	4.03556664017466	4.09691724007181	3.95145824534888	4.2770688984205	3.918373384029	0.0830861244130527	0.868881199753081	0.969751275858173
Merged-chr10-44589509-4	chr10	44589008	44590008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130760.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.05170324107663	5.95930777201198	5.88350808212315	5.83193084127232	6.16422630264915	5.99294112837473	0.0688567261931985	0.820055832657611	0.957445216980616
Merged-chr12-40540121-2	chr12	40539621	40540621	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1A2|LTR|ERVL-MaLR	94068.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.08806307562334	3.16305754943624	3.23879968373353	2.88461136735826	2.77474572879148	3.08642275605862	-1.17826701298736	0.0904886129731031	0.400136924497314
Merged-chr13-92611741-1	chr13	92611241	92612241	+	1000.0	f1_balb.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	603.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	5.4769038826492	5.54580260431754	5.02373781912349	5.59299422062899	5.55970123233248	5.12971108541483	0.139785745265789	0.71545080461355	0.926392907650078
Merged-chr6-54948808-4	chr6	54948284	54949284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	22877.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.75467958967724	7.17072841869006	6.96172233207543	6.70561535592623	7.07768200281641	7.17168994664654	0.0350312604274686	0.900274755090209	0.976731893119283
Merged-chr16-91549845-4	chr16	91549323	91550323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	2729.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	7.07626375321094	6.55408188219217	6.20812404676902	7.09187804182282	7.34697532167089	6.71015020053916	0.62609788110582	0.067972416611581	0.341165933249875
Merged-chr4-131875432-3	chr4	131874917	131875917	+	787.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020587, intron 1 of 5)	intron (NM_020587, intron 1 of 5)	1778.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	4.57442051085494	4.76297128159822	4.84274676304228	4.7740500968294	4.76472343260787	4.79692694424915	0.119507862532575	0.764580174802137	0.941979298344481
Merged-chr9-61267424-4	chr9	61266893	61267893	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	26416.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	3.39629957944388	3.3636790103715	3.58854677706879	3.64824816444973	3.19073589513978	3.33027246465938	-0.169563351783904	0.785967950666833	0.948276270032854
Merged-chr11-69411809-4	chr11	69411317	69412317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	1858.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.95140297654531	7.77914651782678	7.6740493665145	7.77548555867615	8.11053849871976	7.80168160134408	0.144115797325512	0.542663772489296	0.857318248006765
Merged-chr2-153147888-4	chr2	153147406	153148406	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13395.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.36087927643341	6.11036991940734	6.02885410396678	5.9015853125994	5.791305738	5.76728192635354	-0.622710721071018	0.0390766142313003	0.245151808733105
Merged-chr8-72240783-2	chr8	72240276	72241276	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007456, intron 1 of 11)	B1_Mm|SINE|Alu	758.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	5.67006088647709	5.71537454330178	5.3411049974998	5.06496417299707	5.28926253179997	5.27540956778092	-0.742845965596104	0.0349766594051156	0.229467624046429
Merged-chr2-85047888-4	chr2	85047391	85048391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136081)	TTS (NM_001136081)	-2569.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	6.32365372569744	6.07755683994553	6.31035399305982	6.28879128409251	6.30750559244646	6.25131585541271	0.0780620009086076	0.780292529975027	0.945976443458414
Merged-chr10-63376314-2	chr10	63375814	63376814	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6129.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	3.12606808668358	3.42601782540036	3.38848831882184	3.4084112326361	3.74775214404187	3.51402443286789	0.96741398417078	0.121362890176722	0.465942110728773
Merged-chr13-115148741-4	chr13	115148235	115149235	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46771.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	3.56101713756446	3.85863569674003	3.71678488572412	3.44184129125848	3.56611626877251	3.7860434743472	-0.408956324039086	0.473118222218139	0.82066335281065
Merged-chr9-45395224-3	chr9	45394721	45395721	+	826.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022004, exon 8 of 8)	3' UTR (NM_022004, exon 8 of 8)	-4488.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.33516796492562	2.9369747298797	3.1177399673917	3.01203647683887	2.79641789807366	2.94940550820767	-1.03198363965068	0.145035471933823	0.507985592300096
Merged-chr2-102707522-3	chr2	102707025	102708025	+	796.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077515, intron 1 of 10)	intron (NM_001077515, intron 1 of 10)	1087.0	NM_001077515	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	2.63677404605408	2.38577775599136	2.56544828817864	2.34872457853502	2.45194691232228	2.24153978759848	-1.11717458763032	0.201870684786568	1
Merged-chr7-143649599-4	chr7	143649049	143650049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023680, exon 1 of 7)	exon (NM_023680, exon 1 of 7)	115.0	NM_001311145	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	3.59453491547558	4.06078454561753	3.86989525393991	3.94355544972548	4.09069416359995	4.03792425166824	0.506148383021613	0.343546127615452	0.732367959280244
Merged-chr2-157142173-4	chr2	157141672	157142672	+	884.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6950.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	4.68979473203432	4.41708018325044	4.34822281369946	4.4682369594459	4.63281259747763	4.78597940813182	0.316602977006699	0.471018769423853	0.819841643472858
Merged-chr2-150751326-2	chr2	150750826	150751826	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	2245.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	4.51871047437533	4.72472917056709	4.92225675357596	4.83263693663672	5.01533341531537	4.59950163565752	0.262231209660392	0.535365515256265	0.853511885485043
Merged-chr6-5297511-4	chr6	5297031	5298031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	842.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	6.5783902075883	6.83548169205036	6.95180514110511	6.91694999804004	6.91781929615762	7.04893555869191	0.25918169019845	0.31695798525045	0.71087206760042
Merged-chr11-90240400-3	chr11	90239902	90240902	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.90322510125121	6.9970299164458	6.92678052131042	6.38488180177597	6.3626647735927	6.64299329876717	-0.764372633935307	0.00319000586506735	0.0441727422234189
Merged-chr15-97590907-4	chr15	97590409	97591409	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114913.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.94677723114738	5.07494102546075	5.05917741610712	5.13815560592785	4.87980321667466	4.90862795575461	-0.100907918014689	0.788673125455064	0.94895503373255
Merged-chr7-41651754-4	chr7	41651224	41652224	+	881.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360680)	TTS (NM_001360680)	-16290.0	NR_004441	75835.0	Mm.159597	NM_029460	ENSMUSG00000074164	Vmn2r-ps54	1700108E19Rik|4930562N12Rik|Casr-rs5|Gm10948|Gprc2a-rs5	vomeronasal 2, receptor, pseudogene 54	pseudo	2.94424192076438	2.8635462913716	3.34095484350575	2.87812365383529	2.71734379726997	3.09363606867153	-0.744926140770097	0.313121183079744	0.707746598467115
Merged-chr6-92127327-3	chr6	92126884	92127884	+	918.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34951.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	4.80835984251124	5.19490363606447	5.24856540409703	5.18349501298337	5.21515864459303	5.34188116603376	0.312968246994103	0.405233714265733	0.780049815379569
Merged-chr8-8452392-4	chr8	8451882	8452882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208391.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	4.67817141806449	4.52953708643326	4.50419273717961	4.80891313466138	5.02349518148115	4.81923412772834	0.735055379084705	0.0698985583367673	0.34616008503931
Merged-chr16-91905473-4	chr16	91904995	91905995	+	783.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 34 of 39)	exon (NM_010587, exon 34 of 39)	26135.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.15685211994101	4.14157606758287	4.38750589240229	4.06361146679667	4.28263849343628	4.28467806483344	-0.0281531686549431	0.952338646364425	0.989068549972429
Merged-chr6-49267119-4	chr6	49266614	49267614	+	901.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3062.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	2.57032604124944	2.52693645898056	2.82706415248256	2.37255040248441	2.32206588016424	2.60464250973963	-1.28298475990768	0.124672329045867	1
Merged-chr11-103258415-4	chr11	103257920	103258920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	8981.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.39322163612053	6.16621078605059	6.50415093942434	6.35705556420276	6.18095575526174	6.44161036967315	-0.0519086288456037	0.856111237998468	0.966375464211684
Merged-chr2-70990366-4	chr2	70989872	70990872	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28002.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.17058775476784	6.15708270337759	5.88470701902348	6.01034673979141	6.09823707838271	5.89594220259229	-0.129812034167601	0.663320503803747	0.907142972127644
Merged-chr8-105901163-2	chr8	105900663	105901663	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173432, intron 1 of 2)	intron (NM_173432, intron 1 of 2)	689.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	6.73135577338557	6.82580729250921	6.27710790832289	6.64540893480177	6.70235570921748	6.47922643266572	-0.0445490396825397	0.877725659153351	0.971717948241951
Merged-chr9-90055436-6	chr9	90054846	90055846	+	926.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	AT_rich|Low_complexity|Low_complexity	1079.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	7.91587274737695	8.31506470165898	7.83218279639633	8.28405498524176	8.58609474964391	7.95493856445493	0.370622988973018	0.172206476849397	0.550791269670275
Merged-chr11-98150512-4	chr11	98150000	98151000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-884.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	6.4187735820335	6.53654589586092	6.62523419374193	6.38063506238124	6.57818895317671	6.80511874661336	0.108750141253292	0.694419936263285	0.919210273513843
Merged-chr9-62857427-3	chr9	62856944	62857944	+	924.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102468)	promoter-TSS (NM_001102468)	-660.0	NM_001102468	75600.0	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	5.02427787700391	4.50806843331919	5.03750874097039	5.07922628934977	4.2975661860376	5.13327207587134	0.0223728903340404	0.963802409166956	0.991188506370911
Merged-chr10-80140305-3	chr10	80139878	80140878	+	861.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1011.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	3.60168287892816	3.43384799886793	3.50935231354695	3.38696541991563	3.40796172390154	3.78117092746281	0.0440197171903908	0.940778766065685	0.986888338850358
Merged-chr1-164248156-4	chr1	164247641	164248641	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-905.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	5.97617022241953	6.47733744048866	5.95360109921605	5.99941544973735	6.20946928039809	5.86344545233831	-0.217988202961284	0.508422704611873	0.839818423824339
Merged-chr9-66884825-2	chr9	66884325	66885325	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	RSINE1|SINE|B4	34880.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.19928284281882	4.92132414206342	4.74011887880914	4.65757453234842	4.6683065873057	4.80681062749016	-0.60635886282693	0.135960939882092	0.492892343368928
Merged-chr6-31178437-3	chr6	31177938	31178938	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40036.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	5.18185950446708	5.21936449166642	5.06343771592102	5.15302590967718	5.08310107962225	5.4412332656026	0.125352650276083	0.731122227197552	0.931320540641251
Merged-chr10-20104642-4	chr10	20104070	20105070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-44350.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.44554237623707	6.47319418766847	6.15852517745539	6.03847937798072	6.16634304871197	6.41729051585085	-0.276417769769566	0.347134908941789	0.735290112853611
Merged-chr7-88206585-2	chr7	88206085	88207085	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71500.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.74929907609124	5.78858839942226	5.3701993984423	5.7845310866402	5.75569142308653	6.12772660347544	0.412059106606618	0.224560722879605	0.619438735049331
Merged-chr5-65866732-1	chr5	65866232	65867232	+	543.0	f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3163.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	7.57522851785903	7.68687227289511	6.75827522633932	7.13246343084642	7.52859237238947	7.05186197392278	-0.222372888521346	0.497436233151487	0.833640755144374
Merged-chr12-117482400-2	chr12	117481900	117482900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34079.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	6.32174531037484	5.8461893083329	5.66923442268956	6.43612033656648	6.428295077456	6.33273033668515	0.68921051299063	0.0340140055044719	0.225642520434378
Merged-chr13-101766683-2	chr13	101766183	101767183	+	831.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	1534.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.3832127588888	6.57233584034297	6.33610162668683	6.29633103968489	6.7744770025947	6.66263979123588	0.253868796106334	0.381057504677297	0.762958584368558
Merged-chr11-74827162-4	chr11	74826650	74827650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3774.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.43739437192635	7.71173259636202	7.67414539580619	6.8698593161305	6.9116800944999	6.85023841143257	-1.09428389268863	5.34222755161534e-06	0.000234696974717428
Merged-chr19-4231818-4	chr19	4231305	4232305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027196)	promoter-TSS (NM_027196)	-88.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	7.86908841139856	7.60976095295504	7.75491636532866	7.75792898830034	8.06540133961669	7.89348179538577	0.239998380214482	0.299192536759011	0.695964214930834
Merged-chr11-80040375-2	chr11	80039834	80040834	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	40657.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	2.01110559310262	1.86804240501072	1.99132251880789	2.1915735983076	2.10708959130665	2.3340759861456	2.05684182478151	0.0369770301108105	1
Merged-chr12-77056893-3	chr12	77056417	77057417	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94669.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.27460009299161	3.2124685229805	3.09413343869789	3.01152299362894	2.90952655851034	3.33563257299358	-0.469877598811555	0.489079051813761	0.829459847891797
Merged-chr15-84236866-2	chr15	84236366	84237366	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	L1MC2|LINE|L1	4823.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	4.83548572145914	4.84257607383783	4.67141995930194	4.4744846213409	4.58191282510557	5.32632984352306	0.122466848490712	0.794617821782593	0.950805825047068
Merged-chr10-42502045-4	chr10	42501517	42502517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-37.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	8.0526641828081	8.52636299150288	8.16772623742056	8.1162822176893	8.28023540671599	8.29377889569499	-0.051975809603618	0.826345050364017	0.959130347937145
Merged-chr5-120747012-2	chr5	120746476	120747476	+	626.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	2872.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	3.75123389501019	3.55796526554588	3.93883496605525	3.56012781274718	3.73715259606303	3.66372935927489	-0.309394058190756	0.579723212736273	0.872595003519464
Merged-chr5-121197978-2	chr5	121197478	121198478	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6523.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	2.85462356522024	2.83469488643373	2.63052951198214	2.88825653540237	2.66829421614257	3.01561221457092	0.398664515453268	0.596203404138689	0.8798867145239
Merged-chr5-33372574-3	chr5	33372086	33373086	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021500, exon 9 of 9)	3' UTR (NM_021500, exon 9 of 9)	-6110.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	3.60092844628635	3.11011015763649	3.5834999871987	3.38315196939575	3.13919683727954	3.27370592875479	-0.705742100768895	0.282317221507833	0.680265519758811
Merged-chr4-39616641-2	chr4	39616163	39617163	+	627.0	f0_balb.idr|f1_balb.idr	Intergenic	Lx9|LINE|L1	166370.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	2.41591581612837	2.34775269041685	2.37898144165802	2.65387172678984	2.5217743465836	2.83102870405345	1.76539367358083	0.0331477567106748	1
Merged-chr1-164080121-3	chr1	164079627	164080627	+	814.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011346, exon 9 of 9)	3' UTR (NM_011346, exon 9 of 9)	18051.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.64312789262595	3.61526686989377	3.72953016568874	4.37553035091779	4.22504557792118	4.24788340498472	1.93784384457387	0.000164588432730505	0.00427703757359146
Merged-chr16-31757838-4	chr16	31757354	31758354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	3504.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	5.11749911218933	4.99677485103891	4.86083202478044	5.07026534761194	5.15001499304964	5.00267096774227	0.164959285886527	0.657438957897682	0.904798742244684
Merged-chr9-123857104-4	chr9	123856715	123857715	+	815.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011798, intron 1 of 1)	intron (NM_011798, intron 1 of 1)	4814.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	5.34708022123976	5.33736813294136	5.90334471819292	5.77837613837252	5.87890885672947	5.82509344462802	0.531465824105205	0.126311156482622	0.47525891975109
Merged-chr1-136578418-4	chr1	136577926	136578926	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46475.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.60349806232301	5.54564169759866	5.13837427259602	6.06668786789528	6.07563612139742	6.10662346299871	1.11449105327344	0.000824916027918947	0.0154942692666094
Merged-chr4-136893661-2	chr4	136893150	136894150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-736.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	6.05121591625875	6.22554993529699	6.37039438841197	6.43140718289594	6.24514243606514	6.29660762290066	0.184636108082079	0.516178367034959	0.844051513295388
Merged-chr6-125148605-6	chr6	125148136	125149136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	3412.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	7.38407105849609	7.14399860799785	6.86981216766481	6.74310656500029	7.01976131395524	6.78912272369189	-0.449616951033061	0.10003242477726	0.421848765945276
Merged-chr2-103008369-4	chr2	103007878	103008878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65135.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.84693419028157	7.04196037189388	6.74661111963579	6.58380156130621	6.67729237214231	6.8204789328245	-0.308951378718355	0.235358498476242	0.631549225747722
Merged-chr7-118494623-4	chr7	118494119	118495119	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2644.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.35411833456629	3.41808914424911	3.26788447935455	3.01201135165287	2.75252363764136	3.04442036107975	-1.96462315173918	0.00588645615080149	0.0688405120725074
Merged-chr2-5769880-4	chr2	5769397	5770397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55135.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.94370336193755	5.0772183745955	5.39518159264243	5.04953950030027	5.325004406515	5.21855400798999	0.136406309738973	0.718264681072422	0.927293456311605
Merged-chr2-91110639-2	chr2	91110139	91111139	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	B3A|SINE|B2	-7505.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	4.42096478244049	4.20804012284434	4.55965319122926	4.45131549783567	4.57693488476153	4.66407531306256	0.425297970352863	0.333848558568254	0.724614206827878
Merged-chr6-134261585-1	chr6	134261085	134262085	+	716.0	f0_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-134744.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	6.49717409570267	6.32662320042711	6.53952126354429	6.10797282893392	6.0628559188929	6.31295722424878	-0.492444064608605	0.0796021345979376	0.373114827378616
Merged-chr19-10174054-2	chr19	10173554	10174554	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8834.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	4.77733314559463	4.58664455289031	4.55220579963086	4.10789934511967	4.15098698058238	4.2702950457587	-1.23501827952429	0.00582984624926797	0.068303273262333
Merged-chr5-130173370-2	chr5	130172870	130173870	+	727.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	1551.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	4.86249534301277	4.98911989613444	4.87724102116969	5.01346322740906	4.44423459263305	4.66843673046426	-0.417981086652486	0.325334007700152	0.718104679754736
Merged-chr2-35728287-2	chr2	35727787	35728787	+	654.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	31555.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	2.73713371512325	2.51308352121064	2.78264321782954	2.4473391633926	2.5218114168509	2.3435052078894	-1.40929540469781	0.0965821022387311	1
Merged-chr18-36525687-4	chr18	36525190	36526190	+	906.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	2.51183017367747	2.21182684396759	2.56823652727484	2.59692005416421	2.39248219784524	2.76351620342348	0.890901972310412	0.303502034935989	1
Merged-chr5-76524842-4	chr5	76524362	76525362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4445.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	6.33362557772979	6.55361041942854	6.43140427257526	6.45493744986252	6.56365009542589	6.67714127554194	0.194502163855576	0.469436330224814	0.818977178978635
Merged-chr7-122018481-4	chr7	122017975	122018975	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028758, intron 1 of 16)	intron (NM_028758, intron 1 of 16)	2723.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	2.40462034388768	2.30001106837429	2.51548538914098	2.3444456712533	2.22994516745152	2.46465597181014	-0.395610030593805	0.636080138154668	1
Merged-chr2-45554925-4	chr2	45554419	45555419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141686.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.28080525826366	4.39468555234111	4.5192545505329	4.18059900570049	3.97674316705268	4.10820201817753	-0.854181787071187	0.0685460499207159	0.342454501459197
Merged-chr18-54901069-4	chr18	54900572	54901572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89108.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.24399923337335	7.24197142807614	7.08983484683104	7.39883744583542	7.79481383436962	7.41052251293341	0.529441382980025	0.0347594600058391	0.228619488432998
Merged-chr11-22991507-2	chr11	22991007	22992007	+	757.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_009837, intron 1 of 13)	intron (NM_009837, intron 1 of 13)	914.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	5.5119609100206	5.63202139854317	5.77316726702908	5.46154744118251	5.52238673350353	5.7108008211755	-0.139400335052428	0.669527331725401	0.909692012644768
Merged-chr2-156180367-4	chr2	156179854	156180854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291114)	promoter-TSS (NM_001291114)	-116.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	8.79179868257211	8.8818435367058	8.46034987634233	8.4983851447462	8.72457962057292	8.32990798618258	-0.269619683330014	0.253503238152689	0.650896916687683
Merged-chr4-149696411-3	chr4	149695898	149696898	+	642.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	2310.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.38696070392993	5.04006355051076	5.19586931775171	5.35532745027502	5.42537086295184	5.41701757547013	0.364134048499628	0.301558545709018	0.698282503238047
Merged-chr13-21830277-2	chr13	21829777	21830777	+	773.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1881.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	2.42207433241611	2.45796636740351	2.76046875680408	2.52124300201983	2.55128587631136	2.4634010336325	-0.207542635405048	0.796489059662674	1
Merged-chr12-40520037-4	chr12	40519534	40520534	+	859.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	73981.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.8882288010092	4.38076804123968	4.62468072834697	4.7751548199211	4.86458580782665	4.73213043681746	0.335269119868738	0.434213185209738	0.798241587091421
Merged-chr2-112457201-1	chr2	112456701	112457701	+	856.3333130000001	f0_balb.idr	intron (NM_133749, intron 1 of 4)	intron (NM_133749, intron 1 of 4)	2176.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	3.33783526101605	3.31933366752491	3.17224804466306	3.12053030094008	2.96279407586758	3.06472760566572	-1.04787929591435	0.109257201452845	0.441676246779623
Merged-chr10-80069979-2	chr10	80069479	80070479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 6 of 32)	exon (NM_183426, exon 6 of 32)	5460.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	3.87432579104823	3.2809064851636	3.61470278398147	3.59630814881688	3.58334844046219	3.5776312986603	-0.104002814733666	0.864192812394536	0.968269312109804
Merged-chr14-60284585-2	chr14	60284085	60285085	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	19380.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	6.37450449541449	6.34085388967059	6.53541432029124	6.74285135579967	7.22193221565437	7.07770969238399	0.972766124419547	0.000414070021082019	0.00903828392292566
Merged-chr8-91134118-4	chr8	91133620	91134620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302337)	promoter-TSS (NM_001302337)	-93.0	NM_001302268	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	4.64314249571073	4.86585890029388	4.80304654421425	4.65190342163222	4.5011593825932	4.31768031080589	-0.645034840836924	0.130711137306537	0.483186228268893
Merged-chr10-88352857-4	chr10	88352360	88353360	+	922.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	4215.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	5.1731117144774	5.22954288315005	4.99589625533749	5.42747747141833	5.51565204046135	5.23856915458266	0.529668754305584	0.136364826963676	0.493353820687576
Merged-chr12-110840969-4	chr12	110840440	110841440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	-1.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	5.10067957612921	5.38204208219567	5.00616580972276	4.76613877499427	5.19848638094061	4.71366435244845	-0.52963650612605	0.202373699973825	0.592214922711501
Merged-chr7-141228705-4	chr7	141228231	141229231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081118)	promoter-TSS (NM_001081118)	-57.0	NM_001081118	101471.0	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	7.97357445141187	8.10802580321493	7.88285199659786	8.0403935619226	7.68537713414089	7.67976727952485	-0.256543008962926	0.276357119332485	0.673711566430839
Merged-chr3-36572808-2	chr3	36572308	36573308	+	739.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027810)	TTS (NM_027810)	230.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	5.64908616374162	5.60905056940316	5.62565094428291	5.76349037055415	5.85789531487963	5.79335582956497	0.3291047886605	0.283091845940101	0.681090250599507
Merged-chr2-6335537-4	chr2	6335041	6336041	+	977.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	12784.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.09118195465364	6.26749632484379	5.94006537129223	6.27179749725181	6.11055450201813	5.9270099543215	0.00218411800896971	0.994228691226902	0.998918571480046
Merged-chr18-20741683-4	chr18	20741184	20742184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	4720.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	7.60429530008463	7.60671929253516	7.41537250492946	7.31159437580577	7.43552875825254	6.79299304162413	-0.479721289414343	0.0796372195894422	0.373195188533358
Merged-chr7-101107603-2	chr7	101107086	101108086	+	699.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1189.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.4896528015983	4.50180141027949	4.9703579133557	4.59844791637007	4.49380222809265	5.03352971307951	0.132118811479933	0.773373381063963	0.944067559391607
Merged-chr5-36695851-7	chr5	36695360	36696360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081232, exon 1 of 9)	5' UTR (NM_001081232, exon 1 of 9)	161.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	7.75684882501394	7.66696890058843	7.64991385071118	7.75963153936575	7.56167603120305	7.58393016193602	-0.0803518376656878	0.717368944892209	0.927076744255772
Merged-chr17-31564507-4	chr17	31564001	31565001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	-272.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	7.35046962372759	7.44822765547434	7.30737740575393	7.43659150456338	7.45392015845812	7.53264592932771	0.14673107425316	0.514536175540257	0.843107848235413
Merged-chr11-85844259-4	chr11	85843749	85844749	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11634.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	3.93704117890094	3.87152349887763	3.83144015931239	3.57489726508549	3.10634520212806	3.34943867419661	-1.95654931717955	0.00200231503272883	0.0310142645650224
Merged-chr2-102824391-2	chr2	102823847	102824847	+	710.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	intron (NM_001039150, intron 11 of 13)	77318.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.32400490889424	3.64091946702182	4.32010005946527	4.16205591449035	3.85092940465278	4.38666940206281	0.0412119972448639	0.942727095983798	0.987202156853573
Merged-chr14-55092468-4	chr14	55091980	55092980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039198)	promoter-TSS (NM_001039198)	-432.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	5.7554462165075	5.87706326925537	5.40703067599802	5.74039201490788	5.74579207452997	5.68042730601724	0.0280141901316761	0.932206646396533	0.985074623409702
Merged-chr14-14801011-4	chr14	14800507	14801507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19808.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.51957987732879	5.75685699774214	6.12001946213151	5.88045744680727	5.74241733950614	6.21847938317987	0.250181489711301	0.473617537938425	0.820993116047837
Merged-chr2-122573811-2	chr2	122573291	122574291	+	802.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37486.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	3.79052120292107	3.25367172727135	3.51130619801707	3.66853371510956	3.19655258368259	3.2971365749509	-0.510112413236605	0.443265837779195	0.803732051207916
Merged-chr17-48408585-3	chr17	48408038	48409038	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1282.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	5.22762976201223	5.19824938142135	5.18588221979983	5.17081691381065	5.1344496902056	5.43207568651851	0.0744915060880077	0.833839919268541	0.961104751385188
Merged-chr6-97384415-1	chr6	97383915	97384915	+	546.0	f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	ORR1F|LTR|ERVL-MaLR	74871.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.77113097376181	2.79515726086162	3.05587399647385	2.89742319615219	2.74224818506179	3.01456549863177	0.0480806667545244	0.946567508590326	0.988007649185823
Merged-chr5-92107440-4	chr5	92106878	92107878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	B2_Mm2|SINE|B2	-23634.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	5.12761142494394	5.1524907635424	5.50279144543394	5.14756680199364	5.22115113997184	5.45598489962007	0.0277082215494947	0.939755888320587	0.986731489878728
Merged-chr19-21646283-4	chr19	21645809	21646809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	MTD|LTR|ERVL-MaLR	6482.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	4.92979882486459	5.52415201580747	5.56676090692444	5.44863236895905	5.0373677767733	5.52225743007655	-0.0444019038524335	0.912892513793808	0.980493376461863
Merged-chr2-75965199-4	chr2	75964710	75965710	+	919.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12969.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	3.61086799869358	3.74539348009235	3.34264361759575	3.61075684261941	3.69159377576245	3.64707966534384	0.224989941566059	0.699311163245189	0.920569590901702
Merged-chr8-46914147-2	chr8	46913647	46914647	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72740.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.04210400309373	3.19906789518368	3.19448258652457	3.22410919477246	3.05416285766456	3.42871773872277	0.381708861967075	0.557758329321222	0.864328451488262
Merged-chr10-40229956-4	chr10	40229462	40230462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17017.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	7.13321857493779	7.07484994355219	6.70207123774376	7.44886362688971	7.52979121624899	6.95408513269444	0.527076396932543	0.0651803332423599	0.332868533229599
Merged-chr3-51281859-2	chr3	51281359	51282359	+	831.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	A-rich|Low_complexity|Low_complexity	-4345.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.39496270666213	3.63722137314696	3.41233112924308	3.63366654962864	3.57091354892352	3.59586429921903	0.387172786250589	0.500846898417964	0.835260125938228
Merged-chr6-117907727-4	chr6	117907220	117908220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166428)	intron (NM_133834, intron 1 of 3)	-84.0	NM_001166428	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	8.80105212637286	9.05588434465265	8.64255560897239	8.53264155350756	8.65100454617607	8.66330310024891	-0.320158988843714	0.142123888198388	0.503269265578591
Merged-chr17-35823075-4	chr17	35822567	35823567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	-290.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	7.44295868734209	6.90280332408779	6.78309704899229	7.36304901426669	7.46341049401505	7.09332454909684	0.351500134395642	0.231762258663283	0.627892879850697
Merged-chr8-69071188-4	chr8	69070657	69071657	+	976.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 5 of 16)	intron (NM_153054, intron 5 of 16)	-17579.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.08442581327339	5.82032472343604	6.19123216808508	5.1445362031819	5.23516604104624	5.25071326737057	-1.54191887591697	4.53818567631939e-06	0.000203674948088017
Merged-chr17-34263213-4	chr17	34262723	34263723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-4.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	7.24378771254145	7.2227591892796	6.99942354405197	7.60222719013585	8.0403498778252	7.44231857460271	0.828543391106759	0.00208315988355798	0.0318921119553534
Merged-chr5-129008590-4	chr5	129008088	129009088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007941)	promoter-TSS (NM_007941)	-16.0	NM_007941	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	6.04345358517896	6.01731976832561	6.06768626688019	5.92396124977557	5.75244003644072	5.82318265132625	-0.367202700286038	0.212362848885936	0.604853065009053
Merged-chr19-37511529-2	chr19	37511029	37512029	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38889.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.49721764108333	5.41129468329264	5.87380209330102	5.93381749790145	6.10463975075987	6.32167948251721	0.94169701649506	0.00432762682178938	0.0552120779802898
Merged-chr11-11684212-2	chr11	11683712	11684712	+	668.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1713.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.55591492085125	3.56590523817563	3.54541931959663	3.68694726345368	3.4862602578813	3.56175492457954	0.080237421564265	0.886231511101448	0.97374292322368
Merged-chr15-72833728-6	chr15	72833166	72834166	+	864.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	L2|LINE|L2	-23342.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.28256729588465	4.45288094045778	4.16417943137385	4.44888526417281	4.67261679938184	4.55190565099602	0.635730738820669	0.155732688575828	0.525698076245714
Merged-chr6-87122413-8	chr6	87121917	87122917	+	827.197937	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17671.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	5.35303690110641	5.25478895293448	5.391589437689	5.82331007213502	5.64389795716507	5.113564523181	0.462021824844808	0.213833018724235	0.606925154250449
Merged-chr19-37550471-4	chr19	37549968	37550968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175353)	promoter-TSS (NM_175353)	50.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.8749076165843	6.86024640132472	6.69214340739869	6.92898570133469	6.66588843719474	6.580305209988	-0.124520915349512	0.636827652901167	0.89723915288953
Merged-chr7-126745106-2	chr7	126744606	126745606	+	824.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-14520.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	3.81011135031722	3.76993766061238	4.01099677779426	3.91245772695746	4.14439109798906	4.29816082359548	0.78826300511453	0.122704324560695	0.468670251918582
Merged-chr11-106666832-4	chr11	106666307	106667307	+	935.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	48474.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.78895795640432	4.3988765787695	4.66820560801237	4.50872961244422	4.06895642654301	4.73363777472941	-0.423148361819462	0.382249363149737	0.763856120679251
Merged-chr11-75164974-4	chr11	75164470	75165470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001002764)	TTS (NM_001002764)	3182.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.90714602789444	5.93803177666599	6.16394508783767	5.82305724145493	5.58291104588978	5.90041561282742	-0.417741589191137	0.182044057019476	0.564649559348511
Merged-chr8-46801453-2	chr8	46800953	46801953	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	61708.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.29040793764053	3.46957658618208	3.66409491626591	3.37868540105524	3.32261571193843	3.24949130005498	-0.60420910087135	0.324942212932996	0.71780685615767
Merged-chr3-95632914-4	chr3	95632415	95633415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019561)	TTS (NM_019561)	7935.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	7.45916530810419	7.32812611231676	7.45199584727303	7.50707909780105	7.74602224412147	7.32324401705551	0.19645563539506	0.4190997442228	0.788801788481746
Merged-chr18-84951613-4	chr18	84951109	84952109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-85.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	7.47737313224927	7.79793816664162	7.89114232420872	7.77374465241477	8.04288153929692	7.66935789893487	0.164282531604513	0.510419252538181	0.840886591313675
Merged-chr5-120888673-1	chr5	120888173	120889173	+	560.0	f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-1060.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	3.42660724385319	3.79623671180799	3.61829383676478	3.87915670717041	3.59764367731924	4.12173355208341	0.815824663205529	0.163587310926247	0.537632236651834
Merged-chr7-44851096-4	chr7	44850581	44851581	+	809.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253920, intron 1 of 4)	intron (NM_001253920, intron 1 of 4)	1074.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	5.5072254941191	5.58561060091105	5.46312968861789	5.24127465599454	5.45695289480145	5.46744727433902	-0.250764171443131	0.452541836038755	0.809456767794566
Merged-chr3-116206127-3	chr3	116205634	116206634	+	814.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47350.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	6.51880345965153	6.77807946143081	6.60991898188479	6.48796159291338	6.73395665835681	6.22757473889172	-0.203481598888068	0.482443976074047	0.825601019294765
Merged-chr6-124804981-2	chr6	124804481	124805481	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3680.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	5.92857340347987	6.10312837250285	5.80975378588346	5.46716353675022	5.16671183863691	4.97982324354248	-1.37033324436413	0.000104584677429246	0.00294294279321363
Merged-chr19-32108107-4	chr19	32107589	32108589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	7.67919811558085	7.88223557027424	7.28961442411146	7.27986239238677	7.37328005646377	7.11967744147515	-0.560030134161751	0.0340412705901581	0.225697692690508
Merged-chr5-105599494-2	chr5	105598994	105599994	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	80023.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.42249107939956	7.33428010666522	6.99446660029506	7.02348246162119	6.6308950440341	6.53375761324133	-0.789608274892839	0.00527788126492278	0.0635190951851355
Merged-chr7-49047340-6	chr7	49046830	49047830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	88257.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.78432865795537	6.07479146593095	6.13009707150487	5.70989452205306	5.52966929693146	5.68323011129131	-0.658013209848797	0.0382834711429414	0.242169003106421
Merged-chr18-82911723-4	chr18	82911209	82912209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	830.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	7.95824718065578	7.77423706345801	7.62895352611146	8.02023411077795	8.14129137771586	7.95237764350069	0.347518910676569	0.124331704799513	0.471810666892775
Merged-chr10-60388974-2	chr10	60388474	60389474	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	(CA)n|Simple_repeat|Simple_repeat	-10752.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.83268428254716	3.34824004846676	3.8966395402832	3.44021679888645	3.50186005776492	3.52325014079276	-0.792439580829158	0.193542878652526	0.580733325409086
Merged-chr14-25790830-3	chr14	25790326	25791326	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21970.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.00208138166177	3.70778750908596	3.85607593407373	3.57255178290865	3.74874288847403	3.77426802971899	-0.520516645200302	0.337014916909467	0.726949528325002
Merged-chr7-127129174-2	chr7	127128661	127129661	+	562.5	f0_c57.idr|f1_balb.idr	Intergenic	B4A|SINE|B4	-7132.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	4.44381402181475	4.31520292368141	4.60248341172001	4.96058167030678	4.94700359296495	4.78843193639256	1.08253246536974	0.00848200061320973	0.0897772093569622
Merged-chr10-96338257-4	chr10	96337745	96338745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112038.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.9049590995458	6.83620901635486	6.78915981648784	6.84317993674327	6.51990157964487	6.55116218555598	-0.31302596584648	0.23353421437005	0.629836294896575
Merged-chr15-95883815-4	chr15	95883317	95884317	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-53745.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.17539803274083	3.72039914994204	4.11712605031008	3.95440066685206	4.05347234895851	3.67294433921432	-0.318614652698887	0.564783281478265	0.866552670637515
Merged-chr5-146784833-3	chr5	146784342	146785342	+	788.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	MLT1E2|LTR|ERVL-MaLR	10114.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.22720612833115	5.46951043590754	5.9138378685773	6.02326514661135	5.93533687831628	5.90607161000658	0.731123761603006	0.0359510626007198	0.233103406598667
Merged-chr1-74372910-2	chr1	74372410	74373410	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2293.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	4.82662721338391	4.72758668757174	4.80104544134843	5.16788733713515	4.68300652570815	4.62176650680963	0.150857037567536	0.720864253698208	0.928324696220711
Merged-chr15-63611343-4	chr15	63610840	63611840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131732.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.03119229971363	6.3189533319716	5.8598888489686	6.1315571835221	6.46192924574956	5.75749946616682	0.121666221233418	0.724339791770866	0.929317175139469
Merged-chr17-50079031-4	chr17	50078545	50079545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 4 of 9)	intron (NM_181397, intron 4 of 9)	111452.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.69138478014524	4.00395704810058	3.90326282120802	4.43291091585616	4.67494830865931	4.61094138423278	1.96248692229406	7.93275874749447e-05	0.00233322371813899
Merged-chr7-127164259-2	chr7	127163759	127164759	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-26436.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	3.40817707421083	3.17687342224761	3.33005576703031	3.55773799652274	3.62750102085485	3.51530917181251	0.997423483891609	0.0944218569801524	0.40956364370587
Merged-chr2-151494148-4	chr2	151493625	151494625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291074)	promoter-TSS (NM_001291074)	-57.0	NM_001291074	386649.0	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	5.66845778441931	5.69334046722769	5.53368652278472	5.6047649269755	5.20437922668248	5.18011743065971	-0.555946507355639	0.111944804581385	0.446917590229998
Merged-chr19-32486541-4	chr19	32486065	32487065	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 1 of 4)	CpG	796.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	4.73940872399336	5.11749430870985	4.83502797147376	4.81606188889563	4.64880848111404	4.28033272147121	-0.691409028204425	0.121811549702661	0.466849055144701
Merged-chr11-101985365-1	chr11	101984865	101985865	+	953.5	f1_c57bl6.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-574.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	6.21771322410028	6.17827792177306	6.12803328405291	6.01039321730589	5.85571276108143	6.03459769071761	-0.370111917266755	0.197274422646633	0.585260817897851
Merged-chr2-174043755-2	chr2	174043255	174044255	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-33296.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	3.10791840430664	3.05973733415295	3.39716214885848	3.61011328672359	3.0584142261336	3.1841801904889	0.463756834845131	0.49680657903046	0.833336003728501
Merged-chr19-11803610-3	chr19	11803107	11804107	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	15796.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.95678159629344	6.26361390729219	5.99064568814082	6.27304136341271	6.2524267859602	6.22840371789595	0.282440370322104	0.330555430449248	0.721988036980812
Merged-chr14-17659143-4	chr14	17658634	17659634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.41492673877543	5.3233602217567	5.68146981061762	5.13099775462926	5.36938031678349	4.76916279137131	-0.684849867331572	0.0852700894762078	0.386467324208089
Merged-chr10-127211654-4	chr10	127211175	127212175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054097)	promoter-TSS (NM_054097)	-53.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	6.1495199824591	6.36296483863533	5.60817156013618	6.07241760232331	5.73631450050847	5.22153389957014	-0.619073745346759	0.125562790570862	0.474177845108014
Merged-chr11-94160613-4	chr11	94160135	94161135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50819.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	6.15285474483686	6.11388202020092	5.90712673606578	5.18115615877542	4.89649610621492	5.0002168929693	-1.99549330238196	5.04504897521044e-09	4.91221149857918e-07
Merged-chr15-67176967-4	chr15	67176521	67177521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009177)	promoter-TSS (NM_009177)	-139.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.9470321497377	7.11711986821615	7.28158710575029	6.99162702946784	6.92172044097475	7.13136844508333	-0.158132650430933	0.528490361551092	0.850563640958844
Merged-chr16-34111418-4	chr16	34110915	34111915	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 34 of 59)	L1MB3|LINE|L1	-144377.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.93730053314419	4.0347246657519	3.90605663114286	3.90807990386983	3.99078581013107	4.11903278690458	0.122075503139218	0.805690231864643	0.953956034266138
Merged-chr9-65572824-2	chr9	65572324	65573324	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	B1_Mur1|SINE|Alu	7263.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.41820710673697	5.11729939940084	5.6711369772958	5.65112032628739	5.71745663581986	5.68148091714861	0.522589233913842	0.133004632483484	0.487943629455745
Merged-chr5-92504411-4	chr5	92503925	92504925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	1232.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	8.06163668599771	8.12264038122909	7.92681258284823	7.8970201223009	7.96326113913761	7.94417499317652	-0.153609472945118	0.467956178592825	0.818205691164444
Merged-chr7-141309363-4	chr7	141308889	141309889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016874, intron 10 of 11)	PB1D10|SINE|Alu	17383.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	6.51244727123721	6.71655573442598	6.25267511154968	6.57424074670378	6.75260595617435	6.20274748995409	0.0405262887371319	0.895050829387718	0.975642051805398
Merged-chr18-5802495-4	chr18	5801996	5802996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	209849.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.49939866237804	6.16519374488099	6.73079515520915	6.2034308003413	6.05275229777731	6.78911929782293	-0.163228953054428	0.63497433136307	0.896393504194572
Merged-chr5-42967099-4	chr5	42966585	42967585	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266378.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	2.27841351513364	2.47045104255043	2.4167693589661	2.20215689433423	2.1445780116023	2.08877924995378	-1.78071461781411	0.0552412477138425	1
Merged-chr3-107112760-2	chr3	107112260	107113260	+	827.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	11193.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.79828174196403	3.73473350955058	4.1091493453663	4.3291043267007	4.27775116337369	4.13123204917517	1.09603418444181	0.0290455249709496	0.204624506119954
Merged-chr14-70971607-3	chr14	70971151	70972151	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 6 of 7)	intron (NM_001302094, intron 6 of 7)	81544.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.00698814523906	5.10935380039975	5.4723645530539	4.56489657087169	4.24534299411124	4.63916413026567	-1.65249772087276	0.00012867165897923	0.00351033160667009
Merged-chr12-111912515-4	chr12	111912012	111913012	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4457.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	6.25775630626195	6.46737495864619	5.87324805035508	6.30353018877281	6.31601803465315	6.19858116440998	0.0653117414358035	0.831951423939082	0.960547551840437
Merged-chr2-118522283-2	chr2	118521783	118522783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22304.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.46668224503246	2.39569641362334	2.67769839085866	2.53987793847505	2.32403351331239	2.56797726164347	-0.217210264306359	0.789835436966119	1
Merged-chr11-117654141-1	chr11	117653641	117654641	+	1000.0	f0_balb.idr	promoter-TSS (NM_198022)	promoter-TSS (NM_198022)	-148.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	6.33136040897044	6.28001478431048	6.21621214119797	5.96903852886785	5.67490891346658	5.79089829286259	-0.804458596794793	0.00645266439604313	0.0736778265025958
Merged-chr7-80786939-4	chr7	80786432	80787432	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	16399.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.2654993877193	6.15751981137413	6.08771226768796	6.17710589433806	6.19562079835955	6.14840461323274	-0.00235604517853504	0.993279312667801	0.998651348330892
Merged-chr6-120836168-4	chr6	120835670	120836670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153516)	promoter-TSS (NM_153516)	-60.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	8.61490611928679	9.04621888088193	8.35059107974038	8.67237600580694	8.78858954859413	8.34952884448234	-0.122547436934739	0.646140862856044	0.900928760057729
Merged-chr16-11006915-4	chr16	11006427	11007427	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1971.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	8.0028921859126	8.18958683195273	8.28143237414383	7.68652025690243	8.0256268683807	7.85196851801099	-0.417495632883378	0.0707942453732747	0.348868674505149
Merged-chr1-34011139-4	chr1	34010637	34011637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-688.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	5.77309811401548	5.67028975684715	5.46094879126295	5.71987353298016	5.46298412031829	5.64028369253926	-0.0810579157642189	0.805673351249192	0.953956034266138
Merged-chr7-80500348-4	chr7	80499836	80500836	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	34662.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	4.97160381295833	4.89638630391766	4.70411025560989	4.89534382560923	4.91970291063928	4.64401008223799	-0.0780633913075566	0.845211231111227	0.963760118842549
Merged-chr14-16249353-4	chr14	16248891	16249891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	77.0	NM_001362432	59007.0	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	8.21383353619813	8.3889279425138	7.88535963998216	8.12305131505494	7.91620916810927	7.78000572655101	-0.335931678262057	0.173964811791047	0.553189356180945
Merged-chr11-115291073-3	chr11	115290545	115291545	+	627.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 2 of 5)	intron (NM_178035, intron 2 of 5)	6501.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	3.44575017855715	3.87029442425635	3.60121071534313	3.54614589073971	3.57154595365911	3.38793468759163	-0.515371622661089	0.386407358403468	0.767120406662124
Merged-chr9-106248503-1	chr9	106248003	106249003	+	624.0	f1_c57bl6.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	-549.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	5.11712409998366	5.34498348458688	5.15958631623884	5.15945421410744	5.0374390245729	4.89820665696092	-0.361318768593486	0.326891604762233	0.71919610388831
Merged-chr4-120033155-4	chr4	120032646	120033646	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	CpG	-128060.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	5.47842614097964	5.10642028523444	5.04111139973298	4.6985841208352	4.45311246661186	4.68449648888971	-1.38305346252863	0.000699803606236589	0.0136656321210359
Merged-chr14-54653702-4	chr14	54653189	54654189	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085472)	promoter-TSS (NM_001085472)	-4.0	NM_019567	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	5.18390126366581	5.19049882977199	5.33319299997161	5.34431491933604	5.17827200393993	5.69193837800457	0.349647082484264	0.338667404568681	0.728588578553954
Merged-chr17-56716995-4	chr17	56716513	56717513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-92.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	5.92032868727279	5.68251922716124	5.97162781336557	6.04368907038654	5.99767997109929	5.89075899514328	0.220183974019607	0.468150637962516	0.818375980242967
Merged-chr10-93160668-4	chr10	93160163	93161163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146239)	promoter-TSS (NM_146239)	-213.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	7.57990194781784	7.55608872422539	7.62195039377232	7.62509658410353	7.5887598031669	7.6603616108976	0.0560478718862281	0.795895305012611	0.951374777848283
Merged-chr16-24972664-1	chr16	24972164	24973164	+	555.0	f1_balb.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86975.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.18776312046937	3.83238179688925	4.00813822355237	4.28656833210511	4.36849637580182	4.07852487454323	0.672173068667213	0.176263336573351	0.556477451418857
Merged-chr11-8624195-4	chr11	8623704	8624704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	RLTR20A4|LTR|ERVK	40331.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.60193154595229	6.22634993513191	5.95137942945273	6.0265560284435	5.71070655808675	5.32033002815016	-0.979548265695567	0.00814990684072457	0.0871641964528291
Merged-chr4-16159747-4	chr4	16159257	16160257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3886.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	6.24696217248949	6.44022921496628	6.50845386861828	6.4279479245273	6.62476456932532	6.34627881895601	0.134684913361936	0.628425820443661	0.89369433716418
Merged-chr16-91059541-2	chr16	91059041	91060041	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163695, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	9604.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	2.20425141497738	2.21295407322568	2.33523642894235	2.38822341226248	2.20856086424522	2.53571745152479	0.863030806515805	0.314782592546983	1
Merged-chr19-12573434-4	chr19	12572935	12573935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-75.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	7.06737930472854	7.59088763683664	7.36488517866573	7.50663617538752	7.82999042462656	7.78995734857233	0.519334241253854	0.0482014799660684	0.278350249497995
Merged-chr18-36513013-4	chr18	36512500	36513500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2805.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	7.58394289263751	7.52447316890369	7.10234325498983	7.54910158065349	7.63986776255425	7.21277240969804	0.0850464710061637	0.750743367798322	0.937615268276031
Merged-chr4-151996313-4	chr4	151995814	151996814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-135.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	7.90284348579233	7.6528783184374	7.79824120465991	7.98143140227771	7.67277463889523	7.51032770945159	-0.0683657801600611	0.780568113140315	0.946078518476608
Merged-chr17-22081226-3	chr17	22080729	22081729	+	977.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	84748.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	2.64009970634268	2.79538605915985	3.0129208281087	2.9656291316505	3.18157079690002	3.1981166607951	1.44890494049308	0.047822951899361	0.277106697885935
Merged-chr8-83090663-2	chr8	83090190	83091190	+	893.083374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-74662.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.58987901771378	5.42826226486934	5.12726899170469	5.23303489923697	5.04155141219738	4.66068406793786	-0.79973223464607	0.0483155759368567	0.278757623252945
Merged-chr15-99816221-2	chr15	99815721	99816721	+	749.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	B3|SINE|B2	3928.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	4.71613752860993	4.66184137595245	4.90983381017387	4.95378669155853	5.2486895760983	5.43958918632796	1.00440313954893	0.0107097074715591	0.105459566780295
Merged-chr3-75299666-4	chr3	75299175	75300175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29597.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	5.13243740487002	4.71039606701388	4.71864682227927	5.14118234010888	5.105352840495	5.22136411879438	0.587778889168515	0.137237747950759	0.495027571456897
Merged-chr11-100624026-4	chr11	100623510	100624510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028024, intron 1 of 3)	intron (NM_028024, intron 1 of 3)	1055.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	7.19116109603998	6.85698266997749	7.16978229979383	8.1148119995601	8.20815553513815	7.57564515793508	1.34612283065135	8.17457831194706e-07	4.54065628958939e-05
Merged-chr10-17723545-1	chr10	17723045	17724045	+	1000.0	f0_c57.idr	intron (NM_010828, intron 1 of 1)	CpG	317.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.97077738384088	7.08063411949233	7.12414162128125	7.06181946257776	7.01233392691981	7.36242803906295	0.134213208916351	0.592337974051249	0.878003422897225
Merged-chr9-111553453-3	chr9	111552962	111553962	+	948.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114381.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	3.97694995960943	4.07781751687448	4.33087896082638	4.57607673059096	4.36520234607018	4.2176928003688	0.733717433731669	0.124092266286441	0.471396516305798
Merged-chr7-25726158-4	chr7	25725683	25726683	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360789, exon 12 of 15)	exon (NM_001360789, exon 12 of 15)	-7130.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	4.0334634853864	3.82018089765509	3.93373414596721	3.95605163405969	3.77850981449748	4.18623812231565	0.12713545054818	0.806798102157909	0.954366615739605
Merged-chr11-69837254-2	chr11	69836754	69837754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1271.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	3.40297764059021	3.38597009745596	3.20952220792507	3.1687244514853	3.2429297531525	3.28183078888352	-0.445094973466356	0.472800767745879	0.820550293768681
Merged-chr4-59864086-4	chr4	59863594	59864594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50962.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.76878842417238	5.68588748313906	5.74151905295124	5.47621187036267	5.40661478945281	5.72729237578274	-0.372718673130773	0.248790657817797	0.645819769301048
Merged-chr5-96803264-4	chr5	96802760	96803760	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	9875.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.32668968880648	4.99892343490111	5.18587984897912	5.26618718163452	5.21859245107424	5.72161263265638	0.464387584726418	0.221432833842486	0.616075943369966
Merged-chr12-110682961-3	chr12	110682433	110683433	+	835.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025488)	promoter-TSS (NM_025488)	-314.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	3.05579133164417	2.65453162772056	2.97516083598747	2.77356566669209	2.48036415661349	2.74554469358898	-1.24477867807903	0.118473986298496	0.459921210483695
Merged-chr6-108834480-4	chr6	108833979	108834979	+	846.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	5838.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	3.96956595395889	3.91879115980541	4.22100596241497	4.04490959124338	3.85035711319095	4.20189349917231	-0.0114378647372191	0.982019650371761	0.995939924043312
Merged-chr12-36360262-4	chr12	36359761	36360761	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-21189.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	3.09383902447784	3.06447503347104	3.10545199412389	2.86396125395535	2.87128313026364	3.06199078403146	-0.740640263142993	0.273916725516248	0.671314237996942
Merged-chr13-34044137-4	chr13	34043632	34044632	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6491.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	2.75850846708801	2.88645834480971	2.7535186030095	2.57949878205824	2.45873062210821	2.50387714435262	-1.71760168533495	0.0316460779341903	1
Merged-chr11-106461356-4	chr11	106460846	106461846	+	999.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	26450.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	6.43799745817376	5.92996949337997	5.99578964481772	6.64985935236377	6.84316410209574	6.17694605025075	0.732090457933324	0.028606326697824	0.20270986395992
Merged-chr10-39368932-2	chr10	39368432	39369432	+	628.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-867.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.56971746154978	3.21549980504462	3.37950295140556	3.25517492601514	3.33061198616245	2.95839875401043	-0.79965721061706	0.246389661548155	0.643462437124829
Merged-chr2-59240174-4	chr2	59239663	59240663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79313.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	7.35083467099001	7.06874257730099	7.04480754205971	7.23271107594497	7.36834286502023	6.91781538009204	0.0452095095915148	0.864393457940338	0.968278303984855
Merged-chr1-95315717-3	chr1	95315210	95316210	+	681.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	MER113|DNA|hAT-Charlie	2082.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	5.7231348957132	5.81103500485029	5.4016564838159	5.58679955890882	5.71432438424304	5.52793390862958	-0.0940328662306691	0.777770968376011	0.945251190347279
Merged-chr15-98093418-4	chr15	98092918	98093918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144851, exon 1 of 18)	5' UTR (NM_144851, exon 1 of 18)	151.0	NM_144851	223870.0	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	7.1496728608679	7.4576299568571	7.18784482468853	7.63161051503421	7.26764020234963	7.40594373320404	0.244770451147761	0.334240346536262	0.724872195509535
Merged-chr18-80685564-2	chr18	80685064	80686064	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	RLTR20A4|LTR|ERVK	22609.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	1.99776900837765	2.03874041918552	2.21035296235774	1.87447908356266	1.79179866328516	2.22195421740286	-0.856677484331951	0.401925775344065	1
Merged-chr1-85960463-3	chr1	85959951	85960951	+	861.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033290, intron 1 of 1)	MIRc|SINE|MIR	604.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	2.76284686039558	2.78216386743719	2.70520062014643	2.93256281536273	2.78043404387571	2.96257108086973	0.703708268919062	0.326033828007484	0.718486751439343
Merged-chr14-76178642-2	chr14	76178142	76179142	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	67751.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	3.82288607704408	3.84617859904077	3.93296045163202	4.06447131890982	3.94421101301173	3.68722588090982	0.15506618694282	0.76724839124181	0.942573703853445
Merged-chr18-60734800-1	chr18	60734300	60735300	+	645.0	f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1659.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.36684821477325	5.24188235190324	5.53424396214959	5.41761228204124	5.56173071303937	5.45472812545537	0.206874382018552	0.540396296269166	0.85632302227606
Merged-chr9-45954488-5	chr9	45953968	45954968	+	907.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152206, exon 1 of 1)	non-coding (NR_152206, exon 1 of 1)	482.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	8.4072078588475	8.87982338847476	8.36570968690081	8.37898462353525	8.72966575395783	8.27758917544117	-0.132017405469186	0.610068668184307	0.885428451824695
Merged-chr12-28649599-4	chr12	28649094	28650094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104608)	promoter-TSS (NR_104608)	-8.0	NR_104608	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	6.97614605160878	7.3617947877213	7.36843892199483	7.23151972984251	7.42233934651938	6.98528375468553	-0.0163656488950934	0.951507811003948	0.988832566975918
Merged-chr8-13163976-4	chr8	13163487	13164487	+	767.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	MTC|LTR|ERVL-MaLR	4826.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	4.79115083571917	5.12453184919592	4.93952168640279	5.22314001977274	4.91716218362541	4.85301038546933	0.104424221799117	0.792121531747413	0.949928666249466
Merged-chr9-83564409-3	chr9	83563907	83564907	+	954.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	16069.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.34202301873747	3.05951074660899	3.48964158206057	3.1715068537963	3.20540276626556	3.11757558307067	-0.560177209603839	0.392383184941523	0.771172125304963
Merged-chr7-47023305-2	chr7	47022814	47023814	+	680.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-14900.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	5.13584765862139	5.20074565633981	4.79295557733046	4.83155518669166	4.86853894623923	4.29817721307902	-0.789265554484851	0.0805296418922654	0.375537210254532
Merged-chr11-72466473-4	chr11	72465974	72466974	+	890.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	8553.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	5.32034948311148	5.09620342300335	5.19238211410615	5.47668055157312	5.51330763780136	5.55987316240335	0.606330657118993	0.0746384941286553	0.359551407618178
Merged-chr8-122993210-2	chr8	122992710	122993710	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	49074.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.45568497930571	3.61148515462045	3.6988045594912	3.45779649221237	3.39740540695821	3.39618409101218	-0.630678715791945	0.277001895977265	0.674335101242722
Merged-chr13-49308476-4	chr13	49307942	49308942	+	907.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	766.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	7.84227880105524	8.0770790436882	7.84188111631156	7.9860524686231	8.35910109875656	8.00846542893618	0.293973810984945	0.214951477636551	0.608170317702451
Merged-chr1-144318513-4	chr1	144318004	144319004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69400.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	8.09092762356498	8.47301564968133	7.95603415922048	7.73959619060519	8.05892150804072	7.86834371374924	-0.423801060135244	0.0912988746527773	0.402116270417692
Merged-chr12-37242759-4	chr12	37242280	37243280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1141.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	6.70293544507138	7.11041710555912	6.29801098323551	6.61867298481345	7.50837030353945	6.70738160699259	0.409522513086079	0.270141138422877	0.667139350599521
Merged-chr5-3969270-2	chr5	3968770	3969770	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194462, intron 8 of 47)	intron (NM_194462, intron 8 of 47)	41084.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	2.97707581261026	3.09372692127834	2.86483166358011	2.91422808456768	2.95145249579864	3.28593055533006	0.314247099208602	0.654164927013569	0.903708984834566
Merged-chr16-21996849-3	chr16	21996344	21997344	+	736.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	5.10724008049986	5.17977096799592	5.01892103357536	4.58844892268139	4.43699379747419	4.90833167055712	-1.04770731114207	0.00995140064517165	0.100113184002351
Merged-chr13-103919423-4	chr13	103918909	103919909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1177.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	7.43554273535757	7.78586013112838	7.59611795200612	7.67535913126876	7.95712212279118	7.72617453956178	0.261152467173617	0.277211234145297	0.674441896764095
Merged-chr8-122923656-1	chr8	122923156	122924156	+	544.0	f0_balb.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	75282.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.11339464208671	5.89542439114605	5.58757893050868	6.03761648400666	6.14773406295777	6.21703814917964	0.409022350936796	0.197009052260529	0.584870414852249
Merged-chr19-42461728-2	chr19	42461228	42462228	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29940.0	NM_001356589	72832.0	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	5.09510315190615	5.45912339926326	5.1486645938622	4.74229300803815	4.74517657408894	4.73243342202556	-1.10402676236322	0.00442069566229819	0.0561326483547242
Merged-chr8-70523167-4	chr8	70522654	70523654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029366)	promoter-TSS (NM_029366)	26.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	7.89725316562957	8.0467106853928	7.57805508099588	7.90744084279067	8.04993461578395	7.60458636661721	0.0172482226923363	0.946180139067108	0.98796006280508
Merged-chr16-33185051-4	chr16	33184550	33185550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176840)	promoter-TSS (NM_176840)	-21.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	7.89478962762738	8.00916984939605	7.71073834181656	7.7706149452942	7.78697936982363	7.92477261488806	-0.0816824960920683	0.715025844261316	0.926250843792063
Merged-chr12-3911404-1	chr12	3910904	3911904	+	545.0	f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	19660.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.90347336193434	3.957685782015	3.94093556455102	3.7739815738494	3.82431289177436	3.96132430232809	-0.260043523654968	0.608090309453981	0.884873969833456
Merged-chr17-70746928-4	chr17	70746441	70747441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	Charlie9|DNA|hAT-Charlie	99836.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.15173922651695	4.15168258585527	4.0256790524744	3.80235442351076	3.59938305233745	3.55849008066438	-1.45583184116134	0.00662695988569111	0.0750636468867714
Merged-chr4-128621526-4	chr4	128621048	128622048	+	803.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2929.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	6.05259853898941	5.40157161876511	5.76541800878604	6.14983125204091	6.11192737506846	5.87912617935585	0.504243711857966	0.142554400148515	0.503981095998112
Merged-chr16-57504892-4	chr16	57504396	57505396	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-44346.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.09518487938657	4.59311353503302	4.68486893339758	4.7424274341042	4.43368852534637	4.9002858231374	-0.282408233404416	0.52844541986221	0.85053360857083
Merged-chr8-69080577-3	chr8	69080117	69081117	+	880.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	L1MB2|LINE|L1	-8119.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.27994161119426	4.09264050280773	4.5934314110836	4.08051587698743	3.86975604233729	3.92620268223363	-1.0465501907908	0.039287133962851	0.24603024330405
Merged-chr2-167758777-2	chr2	167758277	167759277	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67600.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.93997055952333	5.9323777612161	5.96014511139878	5.85840414676859	5.8413656048184	5.82821664037742	-0.176791915882471	0.547397242955692	0.859266262227511
Merged-chr9-44767809-4	chr9	44767288	44768288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145985)	promoter-TSS (NM_145985)	20.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	8.38462818203974	8.5495766601752	8.30696420642566	8.26197429117178	8.13954146075801	8.32635697551934	-0.25172831319004	0.235249060368887	0.6315179111056
Merged-chr5-99332272-2	chr5	99331772	99332772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-79345.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.78707505048177	3.56452425874118	4.10464824527483	3.71387735353684	3.65163511708684	3.70269242970282	-0.456745685410929	0.417114303180164	0.787792972496192
Merged-chr16-32246176-2	chr16	32245676	32246676	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173439, intron 1 of 2)	intron (NM_173439, intron 1 of 2)	849.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	4.82287581182817	4.93326685737493	4.69819530053583	4.95909561943224	4.6820351975097	4.88156656817783	0.0253757280959801	0.94924399854532	0.988169196639905
Merged-chr5-144772230-4	chr5	144771721	144772721	+	941.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 3 of 70)	intron (NM_001081362, intron 3 of 70)	3429.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	4.38700421996496	4.59045992369088	4.51995533237467	4.71790855120939	4.63632476155689	4.82081145112977	0.526997038182534	0.205833489349521	0.596447652812717
Merged-chr11-114670247-2	chr11	114669747	114670747	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	B1_Mm|SINE|Alu	1466.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	4.04019891336748	4.03106033304132	3.94219835343638	4.15547840760027	4.45532835598032	4.01328435120671	0.638635836365992	0.19967636037326	0.588248843885427
Merged-chr15-102350805-4	chr15	102350305	102351305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153416)	promoter-TSS (NM_153416)	-22.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	6.76177710767516	7.04691099931125	6.82714358966952	6.79189243476175	6.98630273690061	6.85583236134933	-0.00584804068376676	0.981837272560456	0.99582830941535
Merged-chr9-107625380-1	chr9	107624880	107625880	+	816.0	f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	9962.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	4.21320652978787	4.25378927444404	4.78126419389921	4.51134966534683	4.42922683021559	5.00696075702058	0.569483516702738	0.246695700564297	0.643782025373544
Merged-chr1-151614783-4	chr1	151614336	151615336	+	810.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	43463.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.64626609037105	6.82474255686807	6.77304412111738	6.63097711790457	6.87534156273262	6.67385838929849	-0.0179885688778375	0.944753100568066	0.98786315338489
Merged-chr8-46070328-3	chr8	46069827	46070827	+	660.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	B1_Mus2|SINE|Alu	53819.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.15512192119698	2.9890922565618	2.96314321304112	3.15759889102951	2.90436226991017	3.15601173309079	0.143432915452106	0.832463700256729	0.960616839788396
Merged-chr2-128073179-2	chr2	128072678	128073678	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-52860.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.54312120691354	3.06384882140314	3.15227719526926	3.35903452225443	3.58141658361816	3.51675645543305	0.812807771511697	0.218270258040297	0.61244631861386
Merged-chr3-52088105-2	chr3	52087605	52088605	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16901.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.10836808572353	6.21992125115569	6.06789950015093	5.73184997907796	6.11586586694925	5.94414886243022	-0.325501151177274	0.284362373902597	0.682070779368582
Merged-chr15-88862421-1	chr15	88861921	88862921	+	1000.0	f0_c57.idr	5' UTR (NM_145478, exon 1 of 6)	5' UTR (NM_145478, exon 1 of 6)	227.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	8.56328123114773	8.61257936146005	8.38688001497558	8.45298202433602	8.16215756113522	8.1209832409169	-0.378893444473243	0.0880194502732237	0.393677438925061
Merged-chr10-111996609-4	chr10	111996112	111997112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	intron (NM_028608, intron 1 of 5)	652.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	7.35553440598492	7.70991120978849	7.13298194032534	6.90511976837757	7.40133719244603	6.87926753409682	-0.494012980254196	0.0960912410002971	0.413322944948321
Merged-chr18-60747942-7	chr18	60747423	60748423	+	925.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	497.0	NM_001348100	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	7.44287664172708	7.32746624493975	7.21109151306115	7.87139306106281	7.53479432739152	7.11230324083325	0.31878881928658	0.255621336749022	0.652679746869433
Merged-chr18-60788292-2	chr18	60787792	60788792	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	13696.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	3.11359697434472	3.10530120992533	3.51676406883625	3.56186794715469	3.50770991326256	3.53497270599078	1.11598871700252	0.0762869180324607	0.363680639145467
Merged-chr19-9899598-4	chr19	9899097	9900097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016692)	promoter-TSS (NM_016692)	-64.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.4787983097917	7.96517360977706	7.5729232101317	7.45967902542838	7.67734986542075	7.77352190711533	-0.0775192980305925	0.762948057972868	0.941663714620562
Merged-chr15-4731077-3	chr15	4730571	4731571	+	814.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 1 of 15)	Lx7|LINE|L1	3861.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	5.30756510436469	5.30707272160141	5.66766136903115	5.42589315960406	5.58770928635136	5.62627169713319	0.235378194434929	0.492227165313032	0.830994744483672
Merged-chr15-97247348-4	chr15	97246801	97247801	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-14.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	6.31029219791389	5.7389327381983	5.88869465594468	5.69851537793641	4.9621368965182	5.26269107399867	-1.21846833418824	0.00207542773607254	0.0318150683609292
Merged-chr10-68279071-2	chr10	68278564	68279564	+	685.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-338.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.78697798231376	6.73392016293376	6.79497461456948	7.25057563761229	7.34559574820397	6.80665473825114	0.604331691979827	0.0242465339345129	0.183326269479596
Merged-chr7-135601721-2	chr7	135601221	135602221	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-4107.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	3.94493976858408	3.86694836740883	4.1733065561706	3.70134712009513	3.52480026385	3.87922050089255	-0.950121008721716	0.0808000441574728	0.376081561461934
Merged-chr8-3278715-3	chr8	3278238	3279238	+	784.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 1 of 21)	intron (NM_001330056, intron 1 of 21)	879.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	5.26075789527148	5.79390095085476	5.69310047677051	5.58578071352794	5.62306153747344	5.5663025164369	-0.0158471675849268	0.9636892204423	0.991121100730027
Merged-chr18-60805889-4	chr18	60805413	60806413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2064.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.8768994971267	7.79540834091711	7.70697145615047	8.16270764030137	8.67417625875615	8.00644950534079	0.743475961533737	0.00441967115592632	0.0561282047531009
Merged-chr2-165851265-2	chr2	165850771	165851771	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 4 of 23)	intron (NM_027230, intron 4 of 23)	6902.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.9102832713677	2.52893097308662	2.68792639108494	2.79323621934094	2.73981233927067	3.1723475307566	0.949027733055426	0.228750451022308	0.624004805277215
Merged-chr2-156726591-2	chr2	156726091	156727091	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	5312.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	4.38689853274315	4.612793581732	4.84668597867687	4.62214874691882	4.2012062312331	4.53805435405677	-0.397858123856892	0.387931469915831	0.767896302403897
Merged-chr4-103119364-4	chr4	103118868	103119868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039081)	promoter-TSS (NM_001039081)	-22.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	7.58921169976711	7.21181482296791	7.41370651363942	7.54326117435921	7.06337851669898	7.67904000043221	0.0496627480357706	0.858593517289066	0.966933063363181
Merged-chr3-96305151-4	chr3	96304637	96305637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11168.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	4.98234021372403	4.64322019434104	4.9408110996171	5.53506356600686	5.32497554298014	5.21741167072312	1.06307309050412	0.00514569724163336	0.0623871741340272
Merged-chr5-112296773-2	chr5	112296273	112297273	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20082.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.94880295799202	5.03813105608484	5.1895107617305	5.16216145175368	4.71024731058862	4.98667823320501	-0.207847290840066	0.597703770454112	0.880455475375358
Merged-chr12-85365635-2	chr12	85365135	85366135	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	9082.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.01026479485067	4.95874396406694	5.45453943216953	5.34171527650433	5.09627094111832	5.78601585169524	0.556017876179704	0.174571833937832	0.553869181663202
Merged-chr14-20729591-2	chr14	20729091	20730091	+	648.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010811, exon 3 of 15)	exon (NM_010811, exon 3 of 15)	4971.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	3.15680292644319	3.22080190084249	3.36001338008957	3.14613167417299	3.12663182324469	3.53262201801462	0.117243976336297	0.85582360694062	0.966258544020232
Merged-chr11-23684160-2	chr11	23683660	23684660	+	645.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	B3A|SINE|B2	18184.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	4.09799867192957	4.06667321318586	4.37408928374203	4.08609796711867	4.17514847255857	4.39918751079309	0.119241794095774	0.8041170571841	0.953567518836128
Merged-chr13-60735945-2	chr13	60735445	60736445	+	768.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	50419.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.137961307477	4.8924223517157	5.65529007058567	5.01329557461144	4.82808757925081	5.0776520701831	-0.593116954276064	0.156453092635705	0.527071902993309
Merged-chr17-31058936-4	chr17	31058443	31059443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	1249.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	8.87728947357935	9.00680281271225	8.47378971615992	8.70625565857424	9.12545545698666	8.00346459432516	-0.146121721563488	0.647664439715547	0.901510214793849
Merged-chr14-74704023-4	chr14	74703488	74704488	+	947.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-28309.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	3.65823434124401	3.8807715845509	3.54591449130354	3.5180410242157	3.73069803383947	3.50306639928007	-0.387154814097163	0.502432038133598	0.836512096144636
Merged-chr12-91734814-4	chr12	91734311	91735311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	51625.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.47247395620375	7.20359635803143	7.05698001961199	6.90655007184879	7.22405337046651	6.88776145001135	-0.357144978052351	0.181923409914914	0.564599719973151
Merged-chr9-25483419-5	chr9	25482809	25483809	+	900.1533199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	1712.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.76764856312843	4.85093992936094	4.55049865459099	4.78445361467361	4.88399342103608	4.52908229759022	0.0331045680486522	0.937033740136708	0.986037792257163
Merged-chr11-106388099-4	chr11	106387601	106388601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5320.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	5.61413088418634	5.28144025222946	5.24592601837758	5.50640378937582	5.72412563337556	5.37694868074789	0.297384445528498	0.402218861587282	0.77787096574423
Merged-chr19-28777078-4	chr19	28776569	28777569	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58097.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	3.82226660629826	3.84886046271311	4.00787730508711	4.00100675044157	3.96933475271764	3.88077536098605	0.200084574158874	0.691212131449118	0.918256515929559
Merged-chr10-127937613-2	chr10	127937113	127938113	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	39078.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	5.10999062916942	4.82556302911738	4.98474583634895	4.95575018172533	5.1285995979245	4.94079251592119	0.0870210429567289	0.819479820760576	0.957283576025177
Merged-chr11-102191036-3	chr11	102190564	102191564	+	696.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	1365.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	4.51763315937935	4.51993050012891	4.698000040577	4.53858447474783	4.39243322112054	4.79822559334487	-0.00109689193924982	0.997978398571839	0.999579683478894
Merged-chr17-34931941-3	chr17	34931371	34932371	+	976.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010893, intron 1 of 5)	intron (NM_010893, intron 1 of 5)	618.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	8.30880209609185	8.529011018701	7.96087748237685	7.89517894593855	8.39174736919597	8.07735350474535	-0.210755037364576	0.424129337480145	0.792467471606402
Merged-chr19-42000535-2	chr19	42000035	42001035	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	18772.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	7.30230383419263	7.40693517599391	7.23446014121372	7.21696047405351	7.44036422857426	7.26825854691979	-0.00462444115300373	0.984351593773894	0.996597633599236
Merged-chr6-54048982-4	chr6	54048485	54049485	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	9053.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.30853120803996	4.16565149433182	4.24250870417102	4.08229880022862	4.28046151272388	4.07439743113352	-0.228036479584559	0.628994028101436	0.893979743014755
Merged-chr19-10510998-4	chr19	10510482	10511482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	MLT1E2|LTR|ERVL-MaLR	14227.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	6.31249390599205	6.40211095143938	6.24907593687518	6.52925962397598	6.96610447285018	6.50573945843903	0.596124211215969	0.0394040316501927	0.246526817849007
Merged-chr17-56304194-4	chr17	56303710	56304710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111080)	promoter-TSS (NM_001111080)	-103.0	NM_001111078	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	5.02511234986547	4.68738211519101	5.00671894048872	4.85657428984738	4.8561991122953	4.69712225449311	-0.223221900299977	0.577596303473219	0.872148826251218
Merged-chr1-138983262-3	chr1	138982801	138983801	+	687.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	5644.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	5.57053788298957	5.46514138765766	5.3368763787197	5.74135553188133	5.72676403818836	5.55547640867346	0.402110113930955	0.217417923035666	0.611262013108248
Merged-chr8-3514776-2	chr8	3514276	3515276	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	-608.0	NM_001359122	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	2.78097360468655	2.76988523288265	3.23850407589389	2.87307328179949	2.62590403705956	2.80175986620445	-0.856597353524473	0.260413728999522	0.657803047902843
Merged-chr16-10487612-2	chr16	10487112	10488112	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-566.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.62970868162194	4.91318296165699	4.75909671902241	5.59725523097952	5.50633986427332	5.06487090228361	1.34320048961458	0.000657827854238348	0.013039631836374
Merged-chr1-177110814-4	chr1	177110306	177111306	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	137961.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.51012039537346	4.45421221349804	4.44594359841755	4.3624155181754	4.47947988615937	4.33608619089111	-0.18220780931108	0.674099428618624	0.911832513842353
Merged-chr15-58872622-4	chr15	58872150	58873150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026642)	promoter-TSS (NM_026642)	1.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	6.85958383812972	6.97722652441556	6.80425770988205	6.65318432971074	7.23384956319989	6.61602356258622	-0.00349186432900123	0.990587425323849	0.997892660866058
Merged-chr11-116843540-4	chr11	116843057	116844057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	42.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	7.92730996496544	7.92463917083976	7.76530451909395	7.7414255488628	7.97265824817613	7.81309393947094	-0.0406969524218217	0.853928782222807	0.96587152343171
Merged-chr11-102320132-3	chr11	102319607	102320607	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1011.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	5.92770047145469	5.72439989791663	5.93538920689926	5.85085532163651	5.80412588276301	5.80284380979719	-0.0752644092961834	0.804196527703219	0.953600025427277
Merged-chr2-3703952-4	chr2	3703450	3704450	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9508.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.57427263517003	4.42765851486223	4.45389513928077	4.49765061131618	4.41880712305135	4.68196156520544	0.0993446769407943	0.817125497523443	0.956754861188725
Merged-chr17-71268779-2	chr17	71268281	71269281	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	42230.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.33908946855849	3.34871225848947	3.27755671390998	2.86049684914724	2.89659256207726	3.60568386518156	-0.61005413660858	0.420275683909376	0.789521469804967
Merged-chr7-125491491-4	chr7	125490975	125491975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026330)	promoter-TSS (NM_026330)	67.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	6.78210387125818	7.06341714037988	6.79144665337827	6.85127787353492	6.95000077319325	6.73973289273647	-0.0541743221686577	0.834296907510441	0.961273502395445
Merged-chr5-96807419-4	chr5	96806940	96807940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	14055.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.3841041635833	4.5840165126656	4.97807281083834	4.45541344094938	4.93658694203191	4.83797608257937	0.233641811997075	0.610163338121947	0.885428514796843
Merged-chr9-73114501-2	chr9	73113991	73114991	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198609, intron 1 of 5)	B1_Mm|SINE|Alu	1022.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	3.74097817391844	3.5122538648577	3.66447043085959	3.78293776766251	4.06655961728789	4.03457958816322	1.0554793068142	0.0508450436147739	0.287178549355017
Merged-chr18-39461778-1	chr18	39461278	39462278	+	643.0	f0_balb.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	25467.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.6248521960858	5.53918486846764	5.08923926008861	5.77956439539409	5.83665174295254	5.62022166436147	0.556716073690512	0.114363756500112	0.451636423866224
Merged-chr7-100500713-6	chr7	100500100	100501100	+	948.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011671)	TTS (NM_011671)	7242.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	6.26950927853878	6.10527809509232	6.3875364981929	6.33323184821594	6.45319978565484	6.31408068366073	0.201175783988236	0.470464183198861	0.819495618343931
Merged-chr10-94381817-3	chr10	94381319	94382319	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69870.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.59501051517361	5.59106840156504	5.57949922417543	5.33421834462551	5.3115933332842	5.38078331743947	-0.481104278864118	0.139916981888939	0.499868788359785
Merged-chr1-91053405-1	chr1	91052905	91053905	+	1000.0	f0_balb.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-39.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.18223461850521	7.33395354296864	7.46681699945735	7.33804056869783	7.5784896345157	7.12643908024373	0.0637276200961789	0.803139423327075	0.953422605427866
Merged-chr6-88446512-4	chr6	88446017	88447017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023060)	promoter-TSS (NM_023060)	22.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	4.4525659590683	4.43251367548747	4.48397588701352	4.43735560440046	4.0890661853134	4.29044460412648	-0.474418141474803	0.296073969455027	0.692812588948336
Merged-chr15-95810689-4	chr15	95810190	95811190	+	943.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	19382.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.63162583888327	5.39526467723292	5.22160428672953	5.01301639424096	5.52302549096872	4.95451168036056	-0.444227414210707	0.267309508567474	0.664592299348985
Merged-chr10-71360920-2	chr10	71360420	71361420	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	B3|SINE|B2	13157.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	3.62050475663034	3.85882968485814	4.22882915153035	3.59992268651698	3.31605415400097	3.6075236960483	-1.39149122500415	0.0209702414620221	0.166592691576469
Merged-chr2-152793484-4	chr2	152792974	152793974	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35015.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	4.65203277810281	4.44863180551927	4.56360146203964	4.61544024880758	4.58152592627033	4.8217535511971	0.270045087400123	0.518748558526948	0.84542522050122
Merged-chr7-141456951-4	chr7	141456452	141457452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028142, intron 2 of 9)	intron (NR_028142, intron 2 of 9)	1764.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	6.0362841467718	5.88224361670942	5.74944776596566	5.55079750951938	5.73518885129598	5.56084155500005	-0.498021003604051	0.116484788119872	0.455679603553968
Merged-chr7-132237382-2	chr7	132236882	132237882	+	755.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360768, exon 8 of 8)	3' UTR (NM_001360768, exon 8 of 8)	-78282.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	4.30671701437881	4.33174266253526	4.52460202504552	4.04814865153412	4.13685544343822	4.16532785115234	-0.731711934435128	0.11456086640719	0.452032914562748
Merged-chr1-128592335-4	chr1	128591839	128592839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-40.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.26233255334543	6.43714524893747	6.22467525814326	5.22837741627719	5.25786896964361	5.4171341099749	-1.84937006155116	3.67872156917439e-09	3.69238919575227e-07
Merged-chr14-118089477-4	chr14	118088979	118089979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37233.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	6.80051458294899	6.97732914408477	6.7785492934441	6.78857954864807	6.92172442134023	6.47456559250317	-0.16212425331101	0.550370819648776	0.860699816966477
Merged-chr11-58301925-3	chr11	58301436	58302436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-5133.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	6.03004320077903	6.46102606090744	6.18160571937748	6.16436149985915	6.25171879236329	6.34159173368004	0.0158735880765696	0.957371666723013	0.98996830630481
Merged-chr7-96554361-3	chr7	96553788	96554788	+	987.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	-212324.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	2.64616689693329	2.64542468377211	2.57200978543343	2.18425676827409	2.21975942921654	2.3878370656649	-2.66805907861883	0.00523866685461424	1
Merged-chr14-103481109-2	chr14	103480609	103481609	+	622.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-32232.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	6.01485092769651	5.59638894767651	5.89725910688407	6.06116683842809	6.17367577630075	6.00586169807408	0.420811795179619	0.177231872895087	0.558200903889413
Merged-chr1-36259464-2	chr1	36258964	36259964	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13961.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	3.4120902087331	3.38617577206676	3.600985292446	3.65593039633482	3.59104944653973	3.77135801869853	0.742220823887845	0.190309040095817	0.57658151064276
Merged-chr13-29979073-2	chr13	29978573	29979573	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	5318.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	3.17404683098905	3.1858548303824	3.66246181852368	3.28637468019353	3.22560581830192	3.4329726200185	-0.149427387735293	0.817069071832592	0.956754861188725
Merged-chr11-51289799-5	chr11	51289321	51290321	+	984.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	-99.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	3.09525578624433	3.09135223567123	3.10699599882912	2.95860578304035	2.81817470092256	3.00299554249111	-0.823237736917834	0.224072242768835	0.618907989255079
Merged-chr7-6171596-4	chr7	6171107	6172107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-906.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	7.53177926813807	7.7168049386631	7.00040310659679	7.67832621681318	7.97039278808921	7.39676506816277	0.361874144617996	0.223664055282669	0.618437467582505
Merged-chr6-40400252-2	chr6	40399752	40400752	+	588.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35883.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	2.80034798593119	2.69342921432138	2.67613271105589	2.93285944324608	3.00393409757737	3.11654492818645	1.46543168471158	0.0437823112401752	0.263092262126995
Merged-chr11-32535709-2	chr11	32535209	32536209	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	B2_Mm2|SINE|B2	2443.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.181791551015	5.03032569155388	5.33878851498609	5.52673203781059	5.33091093922676	4.91450835567186	0.220577748245316	0.568588982477623	0.868620486790131
Merged-chr4-101670025-4	chr4	101669529	101670529	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22246.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	3.3703887265281	3.62156769606078	3.59247060089747	3.39955453481336	3.10985968385026	3.45158280861626	-0.807849675086818	0.194098294474178	0.581296921414137
Merged-chr5-144015451-2	chr5	144014951	144015951	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-598.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	3.97210098390612	3.78296440049723	3.962446028508	3.85752503454331	3.58298220779677	3.98375802581091	-0.30866978882836	0.565846820628062	0.86688237163883
Merged-chr18-46572185-2	chr18	46571685	46572685	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	2348.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	3.36415230963963	3.58828780880748	3.78846621033157	3.81948130072383	3.94478028961746	4.00054508385152	1.12496813340084	0.0444742808869051	0.26575339059516
Merged-chr4-144905289-4	chr4	144904796	144905796	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12159.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.69568030070716	6.53669700954599	6.31614677922522	6.10763231576502	6.21796185808664	5.73018227370499	-0.319990785891691	0.383843401931882	0.765036051179388
Merged-chr18-9707081-1	chr18	9706581	9707581	+	601.0	f0_balb.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-567.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.82402926485018	4.91325766058204	4.23485560379798	3.82856141997716	3.57443008400311	4.10604268604646	-2.45477013425194	9.70843792848401e-06	0.000390439682529385
Merged-chr5-144931993-4	chr5	144931483	144932483	+	938.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	33847.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	3.56442479655939	3.59363864739263	3.29188716901144	3.63361793207112	3.68102785486569	3.48628799303195	0.388541572213395	0.511336822326836	0.841345315498442
Merged-chr19-55806930-3	chr19	55806433	55807433	+	612.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	65123.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.8696814536621	4.83679414590841	4.58603822918781	4.49266902153788	4.37833734166854	4.73296352869819	-0.590190474121994	0.165734072277856	0.540863657924297
Merged-chr2-129600611-2	chr2	129600111	129601111	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	L2a|LINE|L2	5149.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.67591069922425	5.43775259528768	5.86746835647189	5.65456717963405	5.59980855338915	5.95058565217033	0.131961675687355	0.69593421189561	0.919291538728398
Merged-chr7-19872375-2	chr7	19871875	19872875	+	824.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11076.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	3.66146797004827	3.48599859717419	3.57847456835631	3.92680935083868	3.8337894516816	4.09592248924446	1.2297641780503	0.0239444584222391	0.181908061985867
Merged-chr3-40540820-4	chr3	40540327	40541327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	60.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	3.5720369408974	3.62346766203696	3.73448990896339	3.5330428474964	3.47652483024588	3.37470666222841	-0.63460175132974	0.26744232503796	0.664707245929906
Merged-chr4-3679941-7	chr4	3679477	3680477	+	985.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	1856.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.34753515115103	7.1036621164916	7.37719007668286	7.6561200441599	7.86549756800177	7.82335351175605	0.742224478583024	0.00153755768224736	0.0251696044903479
Merged-chr17-33643143-2	chr17	33642643	33643643	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002842, intron 4 of 9)	intron (NM_001002842, intron 4 of 9)	5048.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	3.02491965629583	3.49392009127698	3.62259906934108	3.24133578898721	3.13038940902565	3.83012774583193	0.120106818765445	0.866854548488386	0.969114221403526
Merged-chr8-46887510-4	chr8	46887015	46888015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-99372.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.10392033677112	6.69428230440075	7.19985769256073	7.04429920166475	7.31171157615717	6.95033720136932	0.162605449627104	0.559208831588923	0.864901733108576
Merged-chr4-139043798-4	chr4	139043288	139044288	+	905.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029857, intron 14 of 16)	L1MEd|LINE|L1	31001.0	NM_021358	15565.0	Mm.291096	NM_021358	ENSMUSG00000028747	Htr6	5-HT6	5-hydroxytryptamine (serotonin) receptor 6	protein-coding	3.41740844471565	3.50158395435993	3.38854566124359	3.02854300267141	2.84509194750777	3.17641627328267	-1.91935963915087	0.00520683665190711	0.0628810543007093
Merged-chr13-91543145-3	chr13	91542652	91543652	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 3 of 15)	intron (NM_001360776, intron 3 of 15)	82055.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.15462179781578	3.08882658435408	3.05437051076084	2.65345104402177	2.55653489508564	2.75940905380683	-2.57629772470009	0.00135677951929748	0.0228856497550587
Merged-chr11-34058375-4	chr11	34057873	34058873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	MTD|LTR|ERVL-MaLR	11445.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.44483828010468	6.26645195664279	6.33104523678102	6.34370091468364	6.55547044282832	6.44743807709734	0.172615115035614	0.526409716768184	0.849433518128594
Merged-chr3-15960939-1	chr3	15960439	15961439	+	917.0	f0_balb.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	45393.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	5.1076121037235	5.220855365434	5.25302328153071	4.1549635629286	4.14888079622842	4.35647977315318	-2.39867861521438	2.91409977031175e-08	2.39601199296542e-06
Merged-chr16-55951183-4	chr16	55950733	55951733	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2z|LINE|L1	-15042.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	5.94876427145894	6.2262886403225	5.74102133031804	5.9706427766103	6.38073927864575	5.80411899394015	0.15845114695346	0.643206372014292	0.899675830462702
Merged-chr2-128753618-4	chr2	128753096	128754096	+	867.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	ID_B1|SINE|B4	54681.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.51231024393258	5.26579151663549	5.46701613046886	5.74581472042379	5.84058352910146	5.6166930188176	0.616420383423838	0.0598085243498208	0.31659911099829
Merged-chr3-83875274-4	chr3	83874791	83875791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-33683.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	6.00151264928952	5.91475073369386	6.34603719672792	5.86465747894759	6.09381069275063	6.33355186347038	0.0251893119183018	0.937269694104137	0.986057836872162
Merged-chr5-125052354-4	chr5	125051842	125052842	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	48867.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	3.60725129144153	3.67581668695837	3.46671364636969	3.16142240414409	3.27678126235514	3.18527995462692	-1.49281376879491	0.0170412034174533	0.145134539811613
Merged-chr8-125669938-4	chr8	125669436	125670436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028908, exon 1 of 1)	exon (NM_028908, exon 1 of 1)	118.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	4.05671064356064	3.98060807795107	4.24747457227691	4.07703941452497	4.04794095391025	4.3966482473367	0.230664421901757	0.638284408573318	0.897407473025053
Merged-chr16-93833742-4	chr16	93833234	93834234	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	1613.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	6.19582129636852	6.31966804703896	6.21848517663017	6.97745071650663	7.13165998194474	6.32317957068639	0.990673091495592	0.00166534731024287	0.0268131228697154
Merged-chr8-106892465-3	chr8	106891940	106892940	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	1153.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	5.33625928701536	5.22335294276101	5.38362568785665	5.17919607901848	5.16693268340922	4.90259779579881	-0.434658378472397	0.229607957043955	0.625238163419178
Merged-chr4-143412086-2	chr4	143411586	143412586	+	819.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355724)	promoter-TSS (NM_001355724)	-340.0	NM_172877	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	6.74070228632715	7.22825308627849	7.19968489514545	7.07402419461069	7.28235925652388	7.1617082180038	0.15870851821758	0.554628465113787	0.862883680820358
Merged-chr10-89745005-4	chr10	89744486	89745486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-5.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	7.2829766647611	7.59327503848812	7.0701694972217	7.4675199360384	7.33350211864318	7.10106372508031	-0.0419541607880841	0.875615686077562	0.971054644903929
Merged-chr10-98919236-2	chr10	98918736	98919736	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	4084.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.25455450671417	4.28562013656903	4.2272601819572	4.207694730239	4.05319428367103	4.38195193261639	-0.129510558301214	0.781400215361649	0.946174647340264
Merged-chr11-118363866-2	chr11	118363366	118364366	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8455.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.67640324325529	5.21205440223257	5.57266020045953	5.04435059552405	5.08819906757336	4.93258998344188	-0.947210230186285	0.0113823092007102	0.110166242174328
Merged-chr13-55727455-4	chr13	55726937	55727937	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028281)	promoter-TSS (NM_028281)	69.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	6.85031819332954	6.97825041692838	7.20945735395616	7.00182513632807	6.93672200016909	7.30001510980791	0.102019802091615	0.699008379701786	0.920515737149593
Merged-chr8-46868897-4	chr8	46868403	46869403	+	760.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117984.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.72830183646786	6.82841631521515	6.90921284241404	6.65076282540043	6.75938920204853	6.7005774357112	-0.17771647754666	0.479483317456755	0.82426854740066
Merged-chr17-50513574-2	chr17	50513080	50514080	+	835.5	f0_balb.idr|f1_balb.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	4033.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.5337482470022	4.72588054532751	4.31450051410223	4.52235251606335	4.69034732371914	4.23527593296109	-0.0886535996799499	0.848840356660602	0.964433787082889
Merged-chr11-116406321-3	chr11	116405807	116406807	+	776.5888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	L1MB7|LINE|L1	6725.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	2.75426407445504	3.06891359483345	2.89467479344782	3.15534776925835	3.22083945686158	3.20946545644196	1.27132293537781	0.0700047753038364	0.346414352868369
Merged-chr12-80794592-2	chr12	80794092	80795092	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	B1_Mus1|SINE|Alu	4060.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	4.38471280922191	4.36399091187101	4.53425709264809	4.8095626174576	4.84291601760627	4.47130222908687	0.743146200029052	0.0834178782386872	0.382278725146482
Merged-chr14-57397760-3	chr14	57397247	57398247	+	820.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	736.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	5.2352197292751	5.223570741458	5.27202711615506	4.93972105343155	4.8872481483396	5.04127373893666	-0.613998627243045	0.0883239386246669	0.394463973221045
Merged-chr12-91591822-2	chr12	91591322	91592322	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1335.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	6.86392478264098	6.88356762949265	6.70310500991595	6.81421747171922	6.94075933147476	6.80902408261825	0.0545838085487995	0.826972026453459	0.959301385433423
Merged-chr18-74216098-4	chr18	74215599	74216599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-113.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	6.19647617716207	6.41443009017661	6.059460864103	6.29283497100713	6.19737509720228	6.09763591084625	-0.0663368675014141	0.819557322803338	0.957283576025177
Merged-chr7-133046751-4	chr7	133046247	133047247	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-31500.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.82049150519758	4.87250059542397	4.71697694334719	4.77201316275952	4.96355435120083	4.6160011438281	-0.0117017223074244	0.976892112538793	0.994769134402338
Merged-chr5-63967648-6	chr5	63967104	63968104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1293.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	6.88684929547265	6.61603920055484	6.62295940937563	6.83841751383271	7.08137753017676	6.76443216112128	0.297403563127189	0.266270431243164	0.664098503595966
Merged-chr4-41756652-3	chr4	41756166	41757166	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155499)	promoter-TSS (NR_155499)	456.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	5.05257857447643	4.70497019117656	4.60928078445687	5.04315494755794	4.58738785974112	4.95144580572583	0.129634886120182	0.7641160557486	0.941958626520407
Merged-chr6-145250342-4	chr6	145249839	145250839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021284)	promoter-TSS (NM_021284)	-108.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	7.52533531429964	6.57851148912754	6.72486856833203	7.07924897085615	6.08335503408283	6.63445995549319	-0.533859917785558	0.384672084384952	0.765846647784445
Merged-chr4-129335444-4	chr4	129334966	129335966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-96.0	NM_009030	19646.0	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4, chromatin remodeling factor	protein-coding	8.22124659886751	8.50997769592755	8.12578509792671	8.24380475665929	8.50399121419462	8.0662172201527	-0.014124119328971	0.953576688992987	0.989446911725587
Merged-chr13-113611797-2	chr13	113611297	113612297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6767.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.41837640526848	4.38504078633202	4.22707949637691	4.41389330066921	4.40222288461931	4.38784957202793	0.127413469031948	0.77268355408878	0.943848608021176
Merged-chr19-3381465-2	chr19	3380965	3381965	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 16 of 18)	intron (NM_013495, intron 16 of 18)	-7392.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	3.6674344216692	3.93879668733473	4.18369727004808	3.66909641522422	3.67582464127597	4.03559863488996	-0.446904559420613	0.424642732058105	0.792732487864373
Merged-chr2-4401314-3	chr2	4400834	4401834	+	693.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177843, exon 1 of 24)	5' UTR (NM_001177843, exon 1 of 24)	358.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.32894982451832	3.16297108954871	3.27246893218232	3.44589052793677	3.35319130037877	3.16531436275601	0.301219023865785	0.629679021315139	0.894368822710663
Merged-chr6-83965341-3	chr6	83964827	83965827	+	737.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355286, intron 16 of 26)	intron (NM_001355286, intron 16 of 26)	-43271.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.11497337680233	3.80169561646235	3.86778131220505	4.33741640977826	4.16706679555306	4.18808493021284	0.844317765185819	0.0906426145889937	0.400578767331603
Merged-chr5-138209703-3	chr5	138209202	138210202	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	15388.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	4.87462934549795	5.0692456890677	4.98643105680136	3.50831746665698	3.51635890228413	3.67150150708519	-4.93171146308752	1.28319271022049e-11	2.03375045775288e-09
Merged-chr1-95666367-4	chr1	95665876	95666876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1218.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.60611892580571	5.16953732713418	4.76461096163626	5.01435935091741	4.64706599799822	4.87432614190032	-0.81640011146273	0.0623434403139928	0.324500999727681
Merged-chr7-123292442-2	chr7	123291942	123292942	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	77473.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.71003205446059	4.24516535565426	4.69297123455869	5.29020057331432	5.16673409795655	4.84107339385579	1.25088252381296	0.00384383407204171	0.0504237341110588
Merged-chr1-165189027-4	chr1	165188574	165189574	+	684.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	5359.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	3.51780914172171	3.5637270462069	3.35813097236546	3.73828107764025	3.63562912892867	4.00135138623194	1.04603005901902	0.0716201130562066	0.351070414632015
Merged-chr2-174673750-2	chr2	174673250	174674250	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30216.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	4.19013167229904	4.45717328776243	4.29470351285368	4.83059142138545	5.31961969975397	4.72625045366719	1.5989740573226	0.000438984903037528	0.00949001190229843
Merged-chr2-124624780-2	chr2	124624280	124625280	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	14484.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.80810988572951	4.83926652910961	5.08124562828328	4.64646734166218	4.57474540029306	5.26330676516448	-0.124611678451609	0.777740188061998	0.945251190347279
Merged-chr3-90586981-2	chr3	90586481	90587481	+	579.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355600)	promoter-TSS (NM_001355600)	29.0	NM_001355600	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	2.7241647967453	2.71408917726181	2.72898584420768	2.72124114852033	2.76782108910228	2.98039672366524	0.523024133539759	0.470927866903908	0.819784379107259
Merged-chr13-45393279-2	chr13	45392736	45393736	+	673.0	f0_balb.idr|f1_balb.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	3494.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.63287047533512	5.37313559475632	5.69858231109784	5.51286923465187	5.47043596858102	5.60325294261043	-0.0817833974711116	0.805459601430853	0.953908858877275
Merged-chr4-103110152-4	chr4	103109667	103110667	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	ID_B1|SINE|B4	4132.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	4.87248079527047	5.0172004394048	4.79500087547193	5.04817599935924	4.9126054208878	5.30235752464725	0.390565594660568	0.315583087165839	0.70985719931053
Merged-chr6-65164355-4	chr6	65163863	65164863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19633.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.28626594187664	6.00950532651348	5.87174241816936	6.30356191240671	5.810406951566	6.09951661292354	0.0120521437006461	0.970375450814113	0.993454328038643
Merged-chr10-127632123-4	chr10	127631609	127632609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10877.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	7.41443784011785	6.81461854710028	7.2192948735177	6.99449800063345	6.91574237700906	7.08311203045273	-0.268248738688501	0.331624892015527	0.72297130356206
Merged-chr17-22866510-4	chr17	22865996	22866996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	638.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	6.31194166865752	6.64834084783828	6.33099896566845	6.46225498409077	6.82697620316096	6.37121073637574	0.216978503771253	0.467680401827628	0.818121155347797
Merged-chr18-32204931-4	chr18	32204421	32205421	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 7 of 16)	intron (NM_011946, intron 7 of 16)	-35410.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	3.47700057574744	3.61398002173903	3.86280799409643	3.59595294611317	3.18172075219059	3.47944987026069	-0.828719560817656	0.179759410875987	0.561276907469273
Merged-chr7-141368560-2	chr7	141368060	141369060	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3450.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	5.36819687467151	5.46592533526854	5.76054576681612	5.84337326209636	5.45261505719613	5.84560350293499	0.346434871839815	0.319267298508059	0.71327503587815
Merged-chr15-83030428-2	chr15	83029928	83030928	+	726.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271413)	promoter-TSS (NM_001271413)	-478.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.79553702876742	4.59811430392604	4.76613486950392	4.71089899841649	4.70364100690934	4.54851638466794	-0.135961549258415	0.738921349072914	0.934106252288505
Merged-chr10-118811290-4	chr10	118810793	118811793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57610.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.56980185260569	7.6024489786569	7.39643308202093	7.54360459057337	7.91051372112049	7.48576981927915	0.202927173130745	0.412255786343428	0.784379401712255
Merged-chr1-191071700-4	chr1	191071176	191072176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	8655.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	8.01754237785745	8.19734571444469	7.86476812702261	8.24262318525022	8.53148772725622	7.85277499686076	0.295651189888388	0.260434308329756	0.657809486916866
Merged-chr5-65698392-6	chr5	65697947	65698947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-591.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	7.30374595583822	7.35063508339429	7.25268620888663	7.33565470938385	7.34039781218019	7.39909467718466	0.0762452470861538	0.735669952570901	0.932816441254758
Merged-chr14-101639738-2	chr14	101639238	101640238	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168592, intron 1 of 2)	intron (NM_001168592, intron 1 of 2)	733.0	NM_001033132	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	4.98415897037646	5.41883575140437	5.13175928044312	5.26813530274721	5.46149205767523	5.23056921316444	0.268372878300116	0.470003227112685	0.819256504977215
Merged-chr17-29045207-3	chr17	29044722	29045722	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12562.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	4.75598751989386	4.70283294845409	4.51969792353607	4.40655512789847	4.30120385479112	4.99025046760117	-0.184533124353276	0.693885975553366	0.919065250351864
Merged-chr3-101597903-4	chr3	101597395	101598395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6812.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.38231868499734	7.29867769549747	7.31988878547339	7.48698470306907	7.56929364850768	7.49406394793564	0.272154096303943	0.222518717783381	0.617466066475006
Merged-chr19-55792655-2	chr19	55792155	55793155	+	780.75	f0_balb.idr|f0_c57.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50845.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.04677611294078	4.81806063024137	4.96036317236607	5.01307950254061	5.12864587661292	5.09503136586344	0.294268594467067	0.429303834154255	0.795682190695026
Merged-chr11-101983272-7	chr11	101982748	101983748	+	906.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	1543.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	7.38886642880284	7.27751299548938	7.33340772603993	7.65671177331646	7.93147026955075	7.59847265523742	0.5991091346421	0.0107613543327543	0.105805361139055
Merged-chr3-108444813-2	chr3	108444318	108445318	+	948.75	f0_balb.idr|f0_c57.idr	intron (NM_011319, intron 1 of 11)	CpG	441.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	7.80071476180726	8.38826658053206	7.74082571839502	7.89204504700988	8.1585413914482	7.35823416454624	-0.232807230388726	0.45533340914417	0.810901192351474
Merged-chr1-153443874-3	chr1	153443371	153444371	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 6 of 9)	B4A|SINE|B4	18662.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	3.1727332311668	3.23557874219982	3.52528591325555	3.24867661782084	3.26085722814742	3.21743178193489	-0.277548894836964	0.659523939272614	0.905467486247391
Merged-chr6-125096080-4	chr6	125095554	125096554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	73.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	6.73292849183076	6.58188728671565	6.74478479014617	6.69952364596264	6.70193352376873	6.75742776865714	0.0515414966461029	0.838468697559007	0.962518552953479
Merged-chr16-35905594-2	chr16	35905094	35906094	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MRLTR33|LTR|ERVK	-32876.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	5.01932187732112	5.18439145820151	5.49318324167962	5.16143297042213	5.3159267422121	5.3278587367616	0.0720899347954912	0.844573486643286	0.96373428957366
Merged-chr1-171051004-4	chr1	171050506	171051506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010188)	TTS (NM_010188)	8388.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	4.80485359457844	5.21733802551929	5.1535658147374	5.02943496780231	4.87834143420411	4.9069446428432	-0.28192934803693	0.470179504347929	0.819351047381472
Merged-chr13-51388280-3	chr13	51387758	51388758	+	800.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-20360.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.88704051230758	3.42801750168563	3.84618236525466	3.98578745396653	3.71943582835196	3.70931429192251	0.249547954062056	0.6637881890916	0.907336430540351
Merged-chr10-80927751-5	chr10	80927258	80928258	+	728.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2333.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.57955890705029	3.4918168895366	3.45881248456692	3.80325325815476	4.10867278363652	3.64898458236159	1.22939403086165	0.0317250640449314	0.216021205323294
Merged-chr8-24432758-2	chr8	24432258	24433258	+	587.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6188.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.02188773551309	3.03545750604212	3.40668033968259	3.04059700620317	2.94687895903487	3.26840879176702	-0.318938927237352	0.640601828019744	0.898524971863643
Merged-chr19-55650536-2	chr19	55650036	55651036	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	51668.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.72665721366091	5.13058873993137	5.55549281318662	5.56559091715303	5.22229352968774	5.61771437057372	-0.0416609607634351	0.912412976095801	0.980363124210176
Merged-chr8-43416050-4	chr8	43415528	43416528	+	841.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109019.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	4.59309357929405	5.01180571717411	4.0898194523203	5.10531629228383	5.22645262652332	4.49434965162088	0.826789123114483	0.416678737080339	0.787565689639071
Merged-chr1-152534348-1	chr1	152533848	152534848	+	551.0	f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	90869.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.41648862177932	5.20860399340807	5.73582229119325	5.58687915090357	5.50513665597248	5.41942420143535	0.0956764967111225	0.786322005927291	0.948455895123478
Merged-chr3-126655274-4	chr3	126654771	126655771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	58320.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.89772384310213	5.81146878255109	5.60085841321103	5.80278249948945	5.9520764421296	5.97296818546065	0.222720956776802	0.471578344027935	0.820112252850319
Merged-chr19-8809375-2	chr19	8808875	8809875	+	847.4166869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027412, exon 4 of 4)	3' UTR (NM_027412, exon 4 of 4)	6845.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	4.37138866268723	4.67268290172966	4.63240984833318	5.02604141017158	5.23453446351569	5.26334355383828	1.37146458740714	0.000639993696487075	0.0127642846350183
Merged-chr2-29772317-4	chr2	29771808	29772808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10780.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	4.99844382738234	5.30816091266184	5.3707160114164	4.76408111711429	4.64544317585883	4.76890098948415	-1.10923040301152	0.00450249066127808	0.0568416390447014
Merged-chr11-53436553-4	chr11	53436093	53437093	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008110, intron 1 of 1)	intron (NM_008110, intron 1 of 1)	3307.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	4.35007487910129	4.50407068085854	4.95064040528842	4.30227290395052	4.60268871124307	4.59022457233066	-0.26499098367665	0.56974368812415	0.868897023832802
Merged-chr9-31386141-4	chr9	31385659	31386659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-33.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	6.21783771684966	6.25808755334788	6.15236297705373	6.54534080439041	6.02266805601486	6.12514643855589	0.0652018241999133	0.8313346683023	0.960444904168444
Merged-chr10-80159243-4	chr10	80158783	80159783	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021565)	TTS (NM_021565)	-8556.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	7.41954069007733	6.90546782549237	7.44797914109013	7.37446329578414	7.59686155085634	7.46465063584833	0.306256610098992	0.252669620109896	0.65000548974521
Merged-chr2-167589482-4	chr2	167588997	167589997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	42508.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	8.65022097041174	8.72978655686041	8.53257665059228	8.57253401742611	8.83303385928731	8.52324734830662	0.017340930579194	0.935544331988942	0.985869643214979
Merged-chr13-91372129-3	chr13	91371555	91372555	+	713.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045161, intron 2 of 2)	intron (NR_045161, intron 2 of 2)	16030.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	3.13041015503427	2.9921907417135	3.02765507812719	2.89048045729314	2.76663023789441	3.09975011482546	-0.633548756527305	0.364265233319332	0.749666877743191
Merged-chr5-134233358-4	chr5	134232876	134233876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3751.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	6.92992778049431	6.97335654052296	7.15826598249925	7.10013017969361	7.22034657462908	6.80444567174131	0.0686627268901283	0.79139250265327	0.949737938863565
Merged-chr11-53980408-4	chr11	53979821	53980821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019723)	promoter-TSS (NM_019723)	12.0	NM_001362202	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	5.03638266678227	5.00800259078213	5.44666818268144	4.86735704617513	5.04646180031039	5.28405664811711	-0.202645760707318	0.606414004393313	0.884104506116006
Merged-chr14-65593064-4	chr14	65592590	65593590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253812)	promoter-TSS (NM_001253812)	22.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	5.09301995828016	5.45904188477883	5.12165608013673	5.40587458573985	5.52137254316333	5.15118523661687	0.270843731244503	0.465716258474509	0.817146354802119
Merged-chr10-111103335-4	chr10	111102848	111103848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61454.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	6.75990786726876	6.69061231124682	6.36266138217115	6.2844913913477	6.48624193921669	6.25826729387628	-0.436318103185105	0.12432423568479	0.47180780554056
Merged-chr10-10325739-3	chr10	10325242	10326242	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	146572.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.14729437116203	3.10414914041045	3.04438303382283	2.63864242444561	2.43078365647267	2.8143746036856	-2.84756109816515	0.00140185075159718	0.0235029613820066
Merged-chr16-32813585-2	chr16	32813066	32814066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3120.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	3.55713535820627	3.53376556077717	3.37692585003817	3.74302194690836	3.04975647671522	3.26916660306951	-0.373111729177421	0.582668584358186	0.873826743013405
Merged-chr1-53777947-2	chr1	53777454	53778454	+	663.0	f0_balb.idr|f1_balb.idr	intron (NM_133810, intron 1 of 7)	ORR1F|LTR|ERVL-MaLR	7261.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	5.48693640753811	5.63790610895657	5.82735517657542	5.75089995366497	5.99353287763743	5.86452163788403	0.415454884498985	0.192486221029802	0.579570854889652
Merged-chr15-73089725-4	chr15	73089242	73090242	+	929.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-670.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	7.85005885037946	8.02571347850892	7.86003384300539	7.76646034906577	8.19892824467763	7.83385760726203	0.0551247899980357	0.818403205360364	0.956952458672942
Merged-chr1-64367792-4	chr1	64367282	64368282	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165022.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.93640708013333	6.04803717192666	5.69748862133308	5.74635038189682	5.80471739775229	5.93687678968256	-0.153055336655848	0.622493212171272	0.891182450376752
Merged-chr16-44332529-3	chr16	44332123	44333123	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159419, exon 1 of 26)	5' UTR (NM_001159419, exon 1 of 26)	215.0	NM_198034	320007.0	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	2.55737180668717	2.35471307189771	2.34606567249729	2.61583124264075	2.40739096416378	2.61816965739857	0.733003641265401	0.374184483039419	1
Merged-chr13-44939516-3	chr13	44939008	44940008	+	806.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	RLTR24|LTR|ERV1	62588.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.17319212302206	3.14698067121305	3.41599885927019	3.05030759223049	2.94231192349819	3.4346948676907	-0.39518055011244	0.561374389087312	0.865407801976397
Merged-chr13-58471892-2	chr13	58471392	58472392	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68549.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.69720437520039	4.59814869232523	4.46196864580826	4.64918188167233	4.2363330935148	4.09168572001618	-0.603277002076501	0.202793717298672	0.592737797842768
Merged-chr19-27429334-1	chr19	27428834	27429834	+	672.0	f0_balb.idr	promoter-TSS (NR_027987)	promoter-TSS (NR_027987)	574.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	5.98417748709712	6.19172375574432	6.30672049996547	6.19606780197431	6.03005566224216	6.03554472941391	-0.121842239656592	0.678052875093674	0.913334687173918
Merged-chr10-50762036-2	chr10	50761536	50762536	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	B1_Mur3|SINE|Alu	-133615.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	3.4198955153364	3.36373509232418	3.85896490914207	3.47471820842522	3.51784577519534	3.88139663417859	0.253272317304417	0.679070305926926	0.913581173754914
Merged-chr7-127850316-4	chr7	127849817	127850817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8509.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	8.67390597116495	8.61851854281982	8.4112904577463	8.4750289824304	8.87414981477536	8.20640937085249	-0.0252420047333206	0.920944289702469	0.982463724790289
Merged-chr2-44920690-4	chr2	44920189	44921189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59067.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	6.37449695519418	6.60213473134232	6.16251748356639	6.07715929662829	6.1399895928077	5.81256171043109	-0.633884945497266	0.0389833431811901	0.244867344081872
Merged-chr4-155707058-2	chr4	155706558	155707558	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	2243.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	4.68439131287555	4.67243199735433	4.7195005089031	4.59441857639953	4.53958145266946	4.82142279750467	-0.103624008442115	0.80015169777706	0.952408432552781
Merged-chr1-138982450-4	chr1	138981946	138982946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4789.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	6.82642009624932	6.94010680440781	6.78792921585281	7.08850424646711	7.28420637247818	6.92201740963122	0.396409079911463	0.118978036304945	0.461040583284212
Merged-chr6-54817641-4	chr6	54817132	54818132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	716.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	7.53848589965258	7.62804880043602	7.32819411800148	7.54078972772744	7.31538899701928	7.54338140760582	-0.0655089195387414	0.783511291390803	0.947225267514266
Merged-chr2-160066997-3	chr2	160066510	160067510	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50357.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.11384334131198	6.32361498196729	6.17288133672993	4.61395595205042	4.44353739615642	4.92710331955009	-3.19735992449395	3.10403527508277e-17	1.31775799576065e-14
Merged-chr2-124664211-2	chr2	124663711	124664711	+	694.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	10630.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.33914079707458	3.42371488456154	3.86026689153387	3.30254289417937	3.24540113647783	3.65004310626227	-0.54572786395259	0.392456554706179	0.771172125304963
Merged-chr1-165661379-1	chr1	165660879	165661879	+	718.0	f0_balb.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26838.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.68570275356739	6.58534584728782	6.74293270906493	6.52591238334564	6.82860725223185	6.5911933626467	-0.00889487122899204	0.973288171250134	0.994013566033857
Merged-chr13-37851854-1	chr13	37851354	37852354	+	583.0	f0_balb.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	24461.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.03527694136085	5.37534632244892	5.21957235889344	4.80999955568483	4.86425735130555	5.3716493968167	-0.399306020550962	0.32110322503704	0.714716602265478
Merged-chr1-161594828-4	chr1	161594332	161595332	+	985.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	100175.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.0918032668035	3.94621988845745	4.17002444735938	4.3302895067257	4.17898747703608	4.19219627734578	0.475600326748515	0.315390524703843	0.709692649130764
Merged-chr15-98516104-2	chr15	98515604	98516604	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3730.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	4.01884129039231	3.70478921377557	4.01374417829678	4.09934806728901	3.69752622959721	4.03532496032753	0.0996257505566851	0.853134541829755	0.965597129346461
Merged-chr13-98867963-4	chr13	98867444	98868444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23098.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.22675384886643	5.1731137055773	5.0506139992245	4.68095802071218	4.57352361178704	4.8645004447077	-1.01415571367204	0.00869428222841002	0.0913888119835196
Merged-chr5-96911727-4	chr5	96911238	96912238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9534.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	7.69721839157584	7.73852176068054	7.7944927165488	7.57131344952063	7.68565693378418	7.66073536888693	-0.146493370700775	0.498506286450717	0.833897130855037
Merged-chr10-40372522-4	chr10	40372016	40373016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	23208.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	3.84862025698733	4.05976892705222	3.77910179027315	3.62545449332429	3.31933773335332	3.79831818833089	-1.07569412402508	0.0651687317705445	0.332860707068093
Merged-chr11-69993241-2	chr11	69992741	69993741	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	B4|SINE|B4	1871.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	5.42257038613053	5.03397253282882	5.47945984575911	5.26449009814771	5.2898527365611	5.45782219329137	0.0312226719051074	0.931612583771423	0.984929477721491
Merged-chr16-35774508-1	chr16	35774008	35775008	+	739.0	f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	4122.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	3.12823155751191	3.04657276936477	3.19653210409716	2.85336427220223	3.20304029040278	2.9111372633001	-0.515123957071642	0.464437178942809	0.816412565447834
Merged-chr8-12756953-4	chr8	12756461	12757461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293667)	promoter-TSS (NM_001293667)	-55.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	5.14959673565832	5.12837276020288	4.73318201366359	5.28805097232317	4.6861807679851	4.75903112107118	-0.177960769990097	0.681844448891335	0.914901722830768
Merged-chr15-67124918-4	chr15	67124420	67125420	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	MIRc|SINE|MIR	51962.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.35142039895097	3.21279636554403	3.37281192343302	3.11151157419172	3.04380607216503	3.16345719307052	-0.892547437167053	0.160938078899616	0.533655406039239
Merged-chr15-41765006-6	chr15	41764505	41765505	+	981.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-23990.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.16812159678661	4.06383392202139	3.80151291669606	3.82288163010117	3.73357993464215	3.87250419518451	-0.688028133381501	0.187045830929615	0.571942874466832
Merged-chr11-32643685-2	chr11	32643185	32644185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1130.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	8.53056527224723	8.60162333055855	8.23932563699947	8.72443729367478	8.98784666335196	8.42664809614601	0.371388559358059	0.131625229738691	0.485107503924214
Merged-chr12-86801362-3	chr12	86800878	86801878	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67009.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	6.58373603750062	6.5747043864902	6.37587942903111	6.3858630752722	6.37597924360555	6.18794255858067	-0.317427205797606	0.245112715995099	0.642381314494918
Merged-chr4-99208640-4	chr4	99208141	99209141	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	RLTR49|LTR|ERVK	14494.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.89825785042776	4.90706531986185	4.66498897764439	5.94792123899897	5.89583536916503	5.15784210417089	1.76512554291562	1.75604054725677e-05	0.000652032706531301
Merged-chr16-85162972-4	chr16	85162465	85163465	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	MTEa|LTR|ERVL-MaLR	10742.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.64203326477085	3.72627426633891	3.87591992101562	3.73804519636554	3.39751740469098	4.03474572080984	-0.0234641156431235	0.968152030697906	0.992682259282642
Merged-chr5-114380668-7	chr5	114380213	114381213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026145)	promoter-TSS (NM_026145)	93.0	NR_138602	117146.0	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	6.68141661160025	6.69910279799206	7.05809318126644	7.17146633878454	6.88258153794822	7.0266228881542	0.330968735018806	0.215162650422085	0.608503802392494
Merged-chr5-96854652-2	chr5	96854140	96855140	+	990.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	61255.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	3.31976787787684	3.17616619791267	3.59097948200502	3.25781196559002	2.87842494895849	3.18236824818998	-1.06797775842931	0.119753908048324	0.462500699840962
Merged-chr9-75547041-2	chr9	75546531	75547531	+	948.5	f0_balb.idr|f0_c57.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12626.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	4.52625302355027	4.59266899042084	4.48547358465574	4.60843684711746	4.57861334012092	4.55271833498162	0.10312672813503	0.803789582714132	0.953557286986578
Merged-chr1-171038124-4	chr1	171037628	171038628	+	928.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19202.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	7.32548639904848	7.31192528596309	6.83674310920147	7.23370307839778	7.66046513417582	7.01667577360407	0.233797831704526	0.431016882810104	0.796627952450168
Merged-chr12-102395786-4	chr12	102395269	102396269	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011175, exon 12 of 14)	exon (NM_011175, exon 12 of 14)	44044.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.13118804016764	5.08009494893458	5.42135105922868	5.24112984349841	4.8952718361853	4.93664717376841	-0.367825912077378	0.337399262839784	0.727389311389076
Merged-chr11-50437457-3	chr11	50436910	50437910	+	662.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6299.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	3.7333569919293	4.00033396958019	4.03545282501809	3.81711442536633	3.97609172107182	4.19182009340037	0.215960741882924	0.678636074048524	0.913513936154101
Merged-chr10-60706454-4	chr10	60705951	60706951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9961.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	6.23375270169627	6.00811084918558	5.60793664748517	5.94391650087666	5.99671080221017	5.70117748308526	-0.163460059994829	0.627116947173133	0.893012220773881
Merged-chr11-51264638-4	chr11	51264150	51265150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-988.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	7.15177101710812	7.4087583405408	6.99791198339386	7.44602898493914	7.31859706692697	7.23813585550054	0.197588601770166	0.431757083215905	0.797054630937124
Merged-chr10-100147909-1	chr10	100147409	100148409	+	584.0	f0_balb.idr	Intergenic	Intergenic	132088.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.45371513015994	3.50362829497845	3.61004842143247	3.66360194624949	3.74453912152385	3.51687125881927	0.465732405013596	0.408097022421071	0.781926100186554
Merged-chr15-50772774-4	chr15	50772262	50773262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	116287.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.89908764675979	2.78977667362711	3.27234818511759	3.04254976414435	2.90682744006099	2.82458971938827	-0.317603347410908	0.662763881594568	0.906804932599005
Merged-chr10-68732414-4	chr10	68731914	68732914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8668.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	5.93461336850116	5.9884443219983	5.54902787679117	6.27708320789322	6.27546919531611	6.29954509235224	0.733387382610815	0.0169606160165285	0.144685133387125
Merged-chr1-125473401-4	chr1	125472892	125473892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37665.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.6473600579987	6.3883386235937	6.31589756159656	6.54055223579228	6.74024126309991	6.68198761509407	0.308616954916172	0.259801885120867	0.657389467739238
Merged-chr5-86920954-4	chr5	86920466	86921466	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152811, intron 3 of 5)	intron (NM_152811, intron 3 of 5)	5537.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	2.9281976232715	3.08341954114209	3.12943869894951	3.09061333368936	3.397779198178	3.47444595326156	1.20006934105386	0.0711336408852789	0.349837375442467
Merged-chr14-54780436-3	chr14	54779945	54780945	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	1441.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.88007404590588	6.08444628034893	6.31807732150624	6.28528102493128	6.35515211192572	6.22094088734641	0.330904460346448	0.261598367699474	0.659388597120289
Merged-chr13-112397572-4	chr13	112396981	112397981	+	690.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66589.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.46901681722444	6.52987847372135	6.04492344929228	6.74782379851701	6.77881697009348	6.45434815152922	0.475193119531684	0.108166871362967	0.439360250170741
Merged-chr15-31602622-4	chr15	31602151	31603151	+	840.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	535.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	6.4419562182904	6.62373850973776	6.69280822796761	6.61678060937492	6.41936682718488	6.40913584613556	-0.160744393157112	0.551351447499214	0.861159830076033
Merged-chr2-19554215-4	chr2	19553687	19554687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027600)	promoter-TSS (NM_027600)	-277.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	4.4904671883155	4.3639140476199	4.50714883598494	4.52422444753532	4.48268108303331	4.40242774855311	0.0547535415283676	0.898441988734774	0.976355113798855
Merged-chr1-121327884-4	chr1	121327399	121328399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271531)	promoter-TSS (NM_001271531)	125.0	NM_001357251	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	7.42440557763672	7.80181675291152	7.35199694303957	7.43603024640078	7.59526695667038	7.5054050910008	-0.0491107742205244	0.844022780201967	0.963711687630021
Merged-chr12-99641132-4	chr12	99640605	99641605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13131.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.63758505806235	5.68894903964978	5.55012962224927	6.2773001593693	6.38233261705977	6.43474533130731	1.26713228826526	1.66232665694541e-05	0.000621775136565903
Merged-chr5-139327959-4	chr5	139327456	139328456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2492.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	5.68069729567225	5.67824886037781	5.9168264776969	5.65967232281363	5.71671584869085	5.59885893728254	-0.165236686988692	0.600392540297309	0.88165932783401
Merged-chr11-107323438-4	chr11	107322961	107323961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134080.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.51594150927504	7.42114262305875	7.03027836924507	7.3090373463662	7.52959364532635	7.06037600634571	-0.0360611919319872	0.894921201885848	0.97562294541392
Merged-chr6-116013876-4	chr6	116013370	116014370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18865.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.18692343079571	6.29540722763208	6.30652691936296	6.11045324222122	6.11787797018702	6.22836295331479	-0.190304365319423	0.493025627666169	0.831208279358962
Merged-chr4-141619584-2	chr4	141619095	141620095	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-962.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	2.56894096647949	2.49661094353533	2.6885262380523	2.56168346660266	2.45275001886722	2.7010607757068	-0.0746887720919577	0.923466787124924	1
Merged-chr15-33186540-4	chr15	33186040	33187040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	L1_Mus4|LINE|L1	103411.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	6.71477579694606	6.77115478136763	6.7965553185341	6.8379098956908	7.31473530706095	6.82465141151385	0.409970196811965	0.137042859969699	0.494599802795534
Merged-chr3-121291700-4	chr3	121291202	121292202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-38.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	7.81415043212802	7.92497765596937	7.59446937265967	7.86130099731434	8.25379499729861	7.75467463026461	0.275697438556204	0.276449705194797	0.673866688369557
Merged-chr13-81763338-2	chr13	81762838	81763838	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19909.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	2.35246979702533	2.3450984263803	2.46051848958673	2.07402898235846	2.23984130239222	2.40953437817466	-0.945341123882402	0.292858043465688	1
Merged-chr15-59004273-4	chr15	59003773	59004773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70463.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	5.87322063484768	5.90164986045449	5.82644360651145	5.66497335495072	5.81670062938827	5.46851601398887	-0.356970878486464	0.260424743347288	0.657805295502433
Merged-chr9-121286073-5	chr9	121285580	121286580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8908.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	5.75834367944532	6.06857350496621	5.73764758744328	6.31318210422837	6.27281017614376	5.88104762867009	0.529286758352377	0.097967361122281	0.417291460898387
Merged-chr2-119548254-2	chr2	119547761	119548761	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_172857)	promoter-TSS (NM_172857)	554.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	6.85747645294886	7.15303912398162	7.24052530105295	6.36160980748094	6.27149234532762	6.40046780230881	-1.17932285009835	1.13796447975135e-05	0.000447273256642182
Merged-chr8-13159571-3	chr8	13159071	13160071	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	L1MDb|LINE|L1	410.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	8.63070479771419	8.82593701689984	8.412355188647	8.73238700502758	8.58748347744918	8.55673878411464	-0.0150626637676117	0.945535898980726	0.987909250703712
Merged-chr4-155802817-4	chr4	155802301	155803301	+	899.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025570)	promoter-TSS (NM_025570)	-77.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	4.59926612735813	4.93343459082529	5.04100476260335	4.60994400924915	4.6214329399822	5.00713397527977	-0.264901463728747	0.534500421394974	0.853068627162717
Merged-chr4-136886287-4	chr4	136885786	136886786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009777)	promoter-TSS (NM_009777)	-109.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	7.62937362482896	7.57124233431639	7.63879941461365	7.96916954899322	8.14885638528884	7.65775899065056	0.484780734018256	0.0424546371158427	0.258213170908409
Merged-chr7-69985956-4	chr7	69985481	69986481	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351841.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	4.8424214545854	5.11253598155461	5.38989843196075	4.88913302288745	5.28191561355756	5.42431896906545	0.184554329993815	0.648734065405705	0.901919199904392
Merged-chr6-124758026-2	chr6	124757526	124758526	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1539.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	1.92660372439756	2.17842915533523	2.15717747676398	2.37178859036891	2.13660546977572	2.36552306227835	1.45742364282028	0.130913457518335	1
Merged-chr1-64928713-4	chr1	64928233	64929233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	28091.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	6.26934724388655	6.73787114962743	6.91213798477647	6.76492941056059	7.07157592378638	6.43646756839992	0.206158379166505	0.523107369638226	0.847994662137535
Merged-chr17-47010106-4	chr17	47009609	47010609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	CpG	423.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	7.96149074547786	8.13960640145682	7.8982790257016	7.68480966687513	7.93612074442113	8.04406203602255	-0.159706843209391	0.488908702042523	0.829423271678195
Merged-chr17-34555698-4	chr17	34555191	34556191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8604.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	5.21393312218838	5.05333741747285	4.70233868254524	4.87090330667651	4.78253838180867	4.39819476249894	-0.681016127781834	0.1200453623002	0.463277886288901
Merged-chr19-41974947-2	chr19	41974447	41975447	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	6189.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	6.64314716485292	6.87733265200627	6.36688419983342	7.10637598530008	7.44554336530137	6.54866853447452	0.680711598202114	0.0397397765831485	0.247894694499634
Merged-chr1-150372112-3	chr1	150371610	150372610	+	836.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145511, exon 12 of 14)	exon (NM_145511, exon 12 of 14)	-20728.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	3.93667806972134	4.11011939048774	4.14005414401324	3.75552361329075	4.02459355611905	3.92421196196828	-0.453755239239238	0.373122430832143	0.757006149061447
Merged-chr13-24338036-4	chr13	24337539	24338539	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	10635.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.91714520781511	4.88667979418858	4.76123407983001	5.31978447702154	5.59432975110603	5.45171217817794	1.23770009802882	0.000704089266445752	0.0137235557934922
Merged-chr2-154285552-4	chr2	154285040	154286040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21704.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	6.17923196932536	6.49025594105599	6.20059822759202	6.01461136830184	6.22653222740468	6.01615591013418	-0.346638950669669	0.241746812895453	0.638803036215977
Merged-chr2-120569816-2	chr2	120569316	120570316	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	B1_Mus1|SINE|Alu	2145.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	4.35894756497766	4.37828316096527	4.58724473634964	4.66563948478932	4.45741623033887	4.69163046425822	0.409156736765254	0.342254385404375	0.731283521951228
Merged-chr6-17643014-4	chr6	17642534	17643534	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6024.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.86662269265739	5.58208937535738	5.79078146980928	5.91007285426411	6.07618630734421	5.80131645572971	0.344811499914102	0.271874817082424	0.669255067149705
Merged-chr6-125360948-2	chr6	125360448	125361448	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 7 of 9)	intron (NM_011609, intron 7 of 9)	11225.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	4.6471554772459	4.49350417696134	4.81711628321678	5.44177842669433	5.25814498780596	4.72013188390688	1.16578057846847	0.00630025968328953	0.072377745095562
Merged-chr13-91809634-4	chr13	91809158	91810158	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1962.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	3.09575362208345	3.07354274226996	3.08658183089294	3.29271247813357	2.95867107883703	3.27418437825528	0.404172537839486	0.541378505079247	0.856830803260814
Merged-chr15-83555684-4	chr15	83555188	83556188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001030014)	promoter-TSS (NM_001030014)	23.0	NM_001030014	223722.0	Mm.37560	NM_001030014	ENSMUSG00000048755	Mcat	AI225907|BC025519	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding	5.79768261788088	6.15472731492054	6.05199048527957	5.71186742371222	5.77234381482103	5.93310759325677	-0.364514762444672	0.242517856878644	0.639642928115406
Merged-chr4-19838386-3	chr4	19837896	19838896	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028746, intron 2 of 3)	RMER19C|LTR|ERVK	19669.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	3.64181747297513	4.02906373650794	3.70888834187549	3.38527330896575	3.37571064620861	3.32635643945481	-1.61663710149172	0.00726321879813239	0.0802813376401434
Merged-chr11-118450767-2	chr11	118450267	118451267	+	659.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	4228.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	3.4711615451586	3.67983981375138	3.65197840189234	3.54391925258772	3.29076180657271	3.7708657065476	-0.222442607374074	0.709379546334106	0.923961035007839
Merged-chr4-43382050-4	chr4	43381704	43382704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	CpG	222.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	7.86013471247902	7.67216758505456	7.55006329773483	7.39278094286437	7.56831254782721	7.12436578366018	-0.465445792520277	0.0645537163412973	0.331146723524153
Merged-chr4-132530000-1	chr4	132529500	132530500	+	627.0	f1_c57bl6.idr	TTS (NM_007512)	TTS (NM_007512)	5414.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.32599660942344	5.40725866712105	5.46822229872508	5.43399122987765	5.40338896212006	5.74105530205223	0.241898650691049	0.476394021193464	0.822573017544423
Merged-chr13-34076905-4	chr13	34076409	34077409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009450, intron 1 of 3)	intron (NM_009450, intron 1 of 3)	1099.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	6.24063252136206	6.16912313693459	6.05363398072756	5.94059681035688	6.00738204677618	5.87527464598644	-0.36847313901642	0.203094006896008	0.593044889392741
Merged-chr16-38702375-2	chr16	38701875	38702875	+	625.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	10660.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.26018899639357	4.13625705546278	4.38682855707338	4.32702304858459	4.33312074489074	4.23305074723118	0.11886531851041	0.794286070443635	0.950654294433248
Merged-chr15-80799290-3	chr15	80798779	80799779	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	(TC)n|Simple_repeat|Simple_repeat	669.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	6.46617194558776	6.50139694186164	6.46978158655503	6.95129438089902	7.3236670520636	6.70654011467358	0.862742951148211	0.0023975131829952	0.0355094832557252
Merged-chr8-75101655-4	chr8	75101152	75102152	+	670.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7857.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	3.57056258848124	3.63741698446824	3.83170854546294	3.40243113737421	3.48244637068878	4.11790785000681	0.0669929801673836	0.913764497387869	0.980796798598326
Merged-chr19-56748061-4	chr19	56747567	56748567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25695.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.17106413737812	6.89673509694611	7.14970199639846	7.15555997096194	7.14194073281334	7.12078206732597	0.0983724450038839	0.686169241881334	0.916596830431285
Merged-chr6-117900337-2	chr6	117899837	117900837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166432)	promoter-TSS (NM_001166432)	-3.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.57659246726649	4.50376568825319	4.85051621552473	4.39464749696854	4.58529471529877	4.9805512923711	0.0546773633586472	0.903071666255156	0.977740257615482
Merged-chr12-102369427-10	chr12	102368851	102369851	+	921.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161365, exon 6 of 10)	exon (NM_001161365, exon 6 of 10)	70462.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.07577665930776	7.39597213985796	7.55887045418621	7.31035003227185	7.1956359090412	6.98092991803267	-0.26712544537529	0.311605873624731	0.706631105711982
Merged-chr8-26696268-1	chr8	26695768	26696768	+	559.0	f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	128155.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.87507456196385	6.20625679891622	6.58070646097222	6.89180455732233	7.00134090421989	6.85354691033709	1.08527371001345	0.000331400816217433	0.00756728845110324
Merged-chr17-8147018-2	chr17	8146518	8147518	+	837.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 1 of 8)	intron (NM_026611, intron 1 of 8)	770.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	5.78368820164383	5.51217548850171	5.29752257874409	5.95246011354203	5.71989276654341	5.46240511542757	0.324897083867151	0.361709488266542	0.747458707295016
Merged-chr10-116565731-2	chr10	116565231	116566231	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	L1M4|LINE|L1	14805.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	6.45982200848558	6.48941659805292	6.47173800495898	7.17803987636354	7.05841892174537	6.78781696727555	0.861587327314634	0.000978668988454586	0.0177182526525956
Merged-chr15-72980935-3	chr15	72980511	72981511	+	675.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 8 of 21)	intron (NM_029640, intron 8 of 21)	74801.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	2.28716707518368	2.44234488642001	2.24215092300056	2.38072237412814	2.31042711932129	2.51130985351293	0.44994411750599	0.594789785916134	1
Merged-chr5-101967389-1	chr5	101966889	101967889	+	637.0	f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102532.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.94679546902533	7.09619400692776	7.07329366910165	6.94738636859526	7.01381324198216	6.69316730211534	-0.210191770030781	0.406127246762666	0.780563846612881
Merged-chr2-163750075-5	chr2	163749550	163750550	+	960.161926	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	CpG	189.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	5.18007567094617	5.38205180763521	5.40050459528734	5.16400499956631	4.91357736205896	4.72634346517109	-0.764606748497049	0.04569876056892	0.270006566031293
Merged-chr2-131079092-4	chr2	131078601	131079601	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 8 of 20)	intron (NM_011426, intron 8 of 20)	7664.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	4.00438976766924	3.88338542674775	4.11855263019332	4.12482846844183	3.89895745585314	4.0472028245842	0.0692318461503982	0.889285532146877	0.974217570526342
Merged-chr18-36700605-4	chr18	36700114	36701114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21-int|LTR|ERVL	-4689.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	6.1756906115435	6.16210236476784	6.15886517083431	5.84386300949293	5.76946685646042	6.17816682953522	-0.409435764377214	0.174452482293456	0.553701638185609
Merged-chr8-25099687-4	chr8	25099196	25100196	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2115.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	6.8154271281682	6.91632808935527	6.97675527974634	7.00303176722317	7.00750783968225	7.14865257678424	0.229315069952722	0.344824192614248	0.733368210920794
Merged-chr19-10689712-2	chr19	10689212	10690212	+	951.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	977.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	7.621235584347	7.70845797968047	7.42863186247624	7.50574931484311	7.62502219155255	7.2434002682617	-0.174991814389622	0.473855227128041	0.821131043651886
Merged-chr15-89428428-2	chr15	89427928	89428928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 3 of 27)	non-coding (NR_004843, exon 3 of 27)	1499.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	4.1707948377146	4.31170095564997	4.6668647386573	4.03912559466306	3.80985300869067	4.47532319623911	-0.716796523190594	0.17771457927594	0.55882263155115
Merged-chr2-148487089-4	chr2	148486575	148487575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43540.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.14621404693398	4.92812001650055	4.87402876625532	4.96741867534284	4.70177901364899	4.9396550144444	-0.277458523196069	0.478619589982057	0.823834402333981
Merged-chr16-24627848-2	chr16	24627348	24628348	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	B2_Mm2|SINE|B2	-94007.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.30158474693159	5.02480372695678	4.9440110003017	5.35013608061679	4.96462797830603	5.49053323358859	0.347387274675124	0.377767142598059	0.760156910384253
Merged-chr15-99825180-3	chr15	99824670	99825670	+	794.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	ID_B1|SINE|B4	-5021.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	4.67075276850244	4.33189409456899	4.30399867040683	4.03094278450862	4.27304542500258	4.08326081681505	-0.830386928894548	0.0854556213787927	0.387034146727987
Merged-chr2-145806888-4	chr2	145806366	145807366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20750.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.98260966592141	6.57204806528503	6.88297906682312	6.17407450902382	6.3536602680551	6.5619408364066	-0.727056483707515	0.0114778770775567	0.110820514721436
Merged-chr2-148586846-4	chr2	148586349	148587349	+	810.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85766.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	3.29161999710272	2.87753790747477	3.22889257118545	3.11855736852914	3.15544904415039	3.30015278254894	0.197997133556493	0.769660206977142	0.943179477204036
Merged-chr6-72742592-4	chr6	72742084	72743084	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	46461.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	4.70809182077695	4.44091532844993	4.96307811655826	5.3589483890233	5.33660384197793	5.29103572504217	1.3452606974792	0.000613234551591229	0.0123370455920704
Merged-chr7-100855384-4	chr7	100854825	100855825	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8088.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	5.71137420640465	5.60162406304628	5.89132548684919	5.4866726118508	5.58271393278328	5.92945126854839	-0.115588138047311	0.729399828413337	0.930622521015005
Merged-chr1-161894298-3	chr1	161893803	161894803	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17621.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	4.96715347130147	5.11040747514958	4.98331988495203	5.16945308483694	5.35852840993499	5.4903694885577	0.648281225655783	0.0733139930117219	0.355744735859538
Merged-chr2-20898910-4	chr2	20898388	20899388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68833.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	5.84469115934356	6.43274522685136	5.71780838003337	6.0366750050543	6.2176794519586	5.53749259790741	-0.130480206344405	0.732345807397383	0.931723932448277
Merged-chr8-25992696-6	chr8	25992094	25993094	+	847.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	B2_Mm2|SINE|B2	1527.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	5.69236463944334	5.96504216250475	5.66230775502523	5.78802912199726	5.60701633649175	5.69752837849057	-0.166409930219984	0.602860551344605	0.882397657327329
Merged-chr10-84615700-4	chr10	84615203	84616203	+	898.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6734.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	4.50132784846805	4.89076577768422	5.17565794920891	4.73672315227708	4.66336578492965	4.98783258190561	-0.179422383456097	0.682280794325002	0.915044974923355
Merged-chr5-43672662-1	chr5	43672162	43673162	+	1000.0	f1_c57bl6.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	10283.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	3.63788819251392	3.45846237656744	3.19858219814637	2.90317784333097	2.8872078626415	3.08800835856074	-2.27135891627635	0.00148328877987052	0.0245224503865421
Merged-chr7-140128048-4	chr7	140127562	140128562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 3 of 6)	intron (NM_153783, intron 3 of 6)	2377.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	5.93696340956746	6.27285975165578	6.31277382652398	5.99746268089506	6.43586092289372	6.37241187237917	0.174831593653583	0.573797824167255	0.870325272361113
Merged-chr17-33554766-2	chr17	33554266	33555266	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-941.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	4.94864726242119	4.99663928121714	5.06156869421019	4.83701251400286	5.06166554292671	5.12549510213928	0.0263515183807724	0.943973444019723	0.987495247303971
Merged-chr16-92697414-4	chr16	92696926	92697926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-97.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.92499331224926	7.032247673107	6.8258176901606	6.81400922354774	7.09387270220176	6.79186275810495	-0.0283213386372171	0.912607992926019	0.9803740348902
Merged-chr3-145923343-2	chr3	145922843	145923843	+	843.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-919.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	5.91038452647501	6.08986710070227	5.70826123691426	5.7986845607855	6.24755912537784	5.90265621206184	0.151749602752988	0.643151757604894	0.899659932869141
Merged-chr5-33935826-2	chr5	33935326	33936326	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011914, intron 1 of 10)	intron (NM_011914, intron 1 of 10)	432.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	6.92295563030426	7.14959939523918	7.13221542865	7.09054284696625	6.61582431120528	6.84040871865351	-0.3220810910388	0.233282778730145	0.629682827928185
Merged-chr2-102943321-2	chr2	102942821	102943821	+	634.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41656.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.80834964474402	7.89516908958734	7.54693679572019	7.46334608242751	7.71992395489162	7.54360108630574	-0.262433006065251	0.270297176267085	0.667262939156975
Merged-chr3-89390122-2	chr3	89389622	89390622	+	906.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1742.0	NR_040403	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	4.19688998140239	4.30219267619219	4.49046663846618	4.62811666961276	4.42794310902896	4.9534473273014	0.86716609808161	0.0582547028524847	0.311861115289812
Merged-chr10-10459348-4	chr10	10458842	10459842	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	12972.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.52739304186833	6.7017543533492	6.63798397671395	6.94704957720625	7.11874634784333	7.11125120367448	0.677065086598199	0.00687751454931461	0.0771245593826644
Merged-chr2-116900084-4	chr2	116899607	116900607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-45.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.43553921641433	5.26066740879377	4.9862390405665	5.36687787503177	5.22407183070096	5.23151277267076	0.0460350403833858	0.89967674451688	0.976683360561224
Merged-chr10-51454593-4	chr10	51454108	51455108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-26004.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	8.24780803520336	8.16202826516642	8.01743959238032	8.11033715281016	8.68739606599573	8.00469566309879	0.232583111957641	0.382828926503017	0.764243403864183
Merged-chr7-140956604-4	chr7	140956071	140957071	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-610.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	6.12116740920747	5.98302851844105	6.27574407809609	6.17976271200593	5.77248080188411	6.73836728578998	0.258882336452973	0.474856014931591	0.8216907060356
Merged-chr6-122952596-4	chr6	122952088	122953088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204241)	promoter-TSS (NM_001204241)	-56.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	7.82623035317343	8.07243924945582	7.29195418868967	7.58839354034938	7.86103126610019	7.05221526067029	-0.323593126522638	0.315878048389361	0.710103428795101
Merged-chr6-17629937-4	chr6	17629450	17630450	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7060.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.4918175119868	6.59004532639696	7.01536741436408	7.21844251109934	7.260648448276	7.27557334767514	0.8336515378076	0.00186447927880007	0.0292605793720099
Merged-chr19-60788956-1	chr19	60788456	60789456	+	826.0	f1_balb.idr	intron (NM_010123, intron 1 of 21)	intron (NM_010123, intron 1 of 21)	1737.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	4.42368972115452	4.44191961500409	4.28073030742519	4.44733027967531	4.39262163358923	4.30267044952806	-0.0115982274320285	0.979014708336485	0.995160277495735
Merged-chr6-67170481-4	chr6	67170014	67171014	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96465.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	3.39780451960883	3.26087195276303	3.31788625112772	3.28794169888377	3.16862746930867	3.21683747479391	-0.424118052567269	0.491304575929954	0.830448151501811
Merged-chr17-35739794-4	chr17	35739297	35740297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32653.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.79623735682994	4.88234971666022	4.95531713404022	5.86411112410406	6.19956629794842	5.3332048821832	1.03051301461437	0.163803664351043	0.537798828885102
Merged-chr12-113074335-6	chr12	113073842	113074842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361919)	promoter-TSS (NM_001361919)	-160.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	4.69491219641556	5.01577628124693	5.6451971097408	5.16106165300927	5.09276152106922	5.37239147334118	0.0790524494551522	0.857594912174303	0.966767080388296
Merged-chr2-113397275-1	chr2	113396775	113397775	+	759.0	f1_balb.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43789.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	5.81196801801646	5.96007657989142	5.71264075450177	5.42394082672286	5.16004187223657	5.08424504060274	-1.1458669809516	0.000799008130868259	0.0151582007645431
Merged-chr11-51638090-4	chr11	51637593	51638593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	4.61729237409927	4.65824833371097	4.68546925447523	4.56214529822715	4.4298099060868	4.7508357371596	-0.184228470387282	0.659383777702176	0.905402077619558
Merged-chr9-57835163-4	chr9	57834678	57835678	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019689)	promoter-TSS (NM_019689)	-944.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	3.46314757640557	3.40418669811567	3.39058145251651	3.80598627058028	3.55208437633273	3.46363562538508	0.713375343729965	0.221806639286597	0.61666232890371
Merged-chr19-11817278-2	chr19	11816778	11817778	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	2125.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	6.31235716225276	6.5268739389868	6.12086843106376	5.86986357354237	6.22409714540622	5.84088061166364	-0.564097934549998	0.0731687243302102	0.355503744714144
Merged-chr6-83038826-4	chr6	83038345	83039345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	4621.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	5.87046025679199	5.68233730089494	5.84221090926144	6.25462845321117	6.1966071122891	6.1567894044523	0.705383401169219	0.0155512175693194	0.136137371016089
Merged-chr1-173739294-2	chr1	173738791	173739791	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2518.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.26900401210528	7.47112043682768	6.55850261961823	6.95344201569909	7.22808170863206	6.84495286075574	-0.214589096092979	0.505191659841562	0.838038626207776
Merged-chr12-8507536-4	chr12	8507045	8508045	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7536.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.76739039553114	4.89789306328292	5.01509337717278	5.27909256205876	5.18653451104045	5.11438709919772	0.654144136104056	0.0765213780132703	0.364316766331941
Merged-chr9-120034526-4	chr9	120034013	120035013	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10915.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	5.20236375735808	4.95705272721249	4.90738947840138	5.22777858952306	4.74467151936955	4.8576763141868	-0.159354800293674	0.693886466681959	0.919065250351864
Merged-chr10-121367291-4	chr10	121366770	121367770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	2180.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	6.70086972517825	6.78195499599333	6.5262593122516	7.17040938544244	7.2216321082429	6.85491290787481	0.645217567390938	0.0142862236531611	0.128483365513643
Merged-chr4-32248508-4	chr4	32248007	32249007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168928.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.53171192491454	5.28662811046375	4.65021952685696	5.11902704689724	4.89842872206043	4.76564223363865	-0.582338311155542	0.190054553400442	0.576216758852106
Merged-chr4-128667345-4	chr4	128666867	128667867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	12665.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.67627350218321	7.91187373422208	7.65820128567225	7.50495751069972	8.01633598687841	7.52990566750891	-0.0587145449695936	0.822024957859439	0.958041123079214
Merged-chr10-127666973-4	chr10	127666469	127667469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	-154.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	7.50213754390237	7.62091619862086	7.53759390925016	7.66750826342779	7.84240892612535	7.64238318518593	0.246260963532211	0.269837187711756	0.666905044122659
Merged-chr6-13052270-3	chr6	13051777	13052777	+	866.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17482.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	2.95657141737046	2.69987481785206	2.71513117546816	2.81626247039283	2.83900914859572	2.9735384682202	0.379014858342802	0.602199752675375	0.88225227970428
Merged-chr13-55442661-2	chr13	55442129	55443129	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2443.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	3.30671666842182	3.48311539342636	3.63183672255619	3.77528633717355	3.62459295785642	4.28275035442606	1.47533743563614	0.0151290592708803	0.133466790056341
Merged-chr7-81225197-1	chr7	81224697	81225697	+	551.0	f0_balb.idr	intron (NM_008803, intron 1 of 21)	B4A|SINE|B4	11393.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.81198445380004	3.91588738334206	3.84534222495742	3.87262445057168	3.61427377272564	3.91459243614069	-0.194129889202092	0.713696191882122	0.925594279345516
Merged-chr2-158177885-2	chr2	158177385	158178385	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14123.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	5.24727394355332	4.79472446213787	4.97108749651298	5.0130908807968	4.60959638700462	5.16937582228708	-0.171712655511962	0.685515387744074	0.916283576052925
Merged-chr5-122778998-4	chr5	122778520	122779520	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	CpG	390.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	7.46351208375479	6.87413567704508	7.10391998694464	7.24178512333699	6.53001358303414	6.45251919878481	-0.568050205668289	0.0923884708690943	0.404902763493149
Merged-chr11-51823994-2	chr11	51823494	51824494	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 10 of 12)	intron (NM_001357588, intron 10 of 12)	33487.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.28724787888195	3.23426025072387	3.65488451386094	3.4518987791755	3.28473939890647	4.07714874610877	0.854761543792059	0.201119388366114	0.590644904075377
Merged-chr18-60727612-4	chr18	60727104	60728104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348103)	promoter-TSS (NM_001348103)	-38.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.13538996120708	6.12607608953939	5.83247313651053	6.00919792995263	6.103680386844	5.99383235266688	-0.0156598263183769	0.957952564300941	0.990000537228272
Merged-chr3-116861848-4	chr3	116861358	116862358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	intron (NM_009146, intron 1 of 16)	178.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	7.60744548601317	8.04988246004026	7.39757849815567	7.80716964758052	8.1146147760837	7.73730945071837	0.25558577123244	0.352979929485845	0.74042924884689
Merged-chr13-6648814-4	chr13	6648326	6649326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-55.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	5.84329527068789	5.50908366292883	5.68126079364571	5.81826610486214	5.56852141077785	5.57749507478553	-0.0461460657610632	0.888644805296863	0.974092096578026
Merged-chr10-21295938-4	chr10	21295447	21296447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145209)	promoter-TSS (NM_001145209)	-32.0	NM_001042593	56422.0	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	6.84162838078339	6.66135503576725	6.1904403521445	6.69621714510147	6.73089019626358	5.95011217910947	-0.132273006821154	0.708724622585422	0.92375127577894
Merged-chr14-54474803-3	chr14	54474287	54475287	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1313.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	2.50258476430675	2.31295419485142	2.39402744023067	2.01486887165728	2.15143415381942	2.06386529591075	-2.54533027754468	0.0145368130801531	1
Merged-chr6-143114682-4	chr6	143114167	143115167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-14515.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	6.35456579884197	5.73310929631784	5.64849733116082	6.34105081070466	5.85183710299363	5.71237540142539	0.0685730133489288	0.857024413311875	0.966670562326887
Merged-chr13-58457159-3	chr13	58456639	58457639	+	883.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53796.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.10973636489505	4.97479973688256	5.08505243373577	4.93670323721365	5.19712887600903	4.97317842828013	-0.0116529384669692	0.975105280174421	0.994454548709104
Merged-chr9-72991641-4	chr9	72991145	72992145	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	6141.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	3.10268093558794	2.86806777459498	3.08841975870974	3.03863584903346	2.98369652672786	3.27130654056635	0.339480511982265	0.61649890708114	0.888382305092742
Merged-chr10-118810862-3	chr10	118810372	118811372	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58031.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.25246793417833	6.82593663194141	7.11364497348876	7.18948099088072	7.25877642902945	7.20800014031762	0.218435438865429	0.389722264426435	0.769293055734938
Merged-chr2-26122338-2	chr2	26121838	26122838	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	CpG	473.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	3.67853877308123	3.10799697740251	3.6432482562108	3.70110666193802	3.36256832442666	3.44451620222535	0.0308413057940289	0.96245537166898	0.990858153530085
Merged-chr7-25246591-2	chr7	25246091	25247091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	4167.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	2.822452854331	2.67716854818543	3.01930546669931	2.95887710675059	2.78538738207472	3.14662642650271	0.602130391291796	0.408698833183054	0.78226656710381
Merged-chr2-163928633-4	chr2	163928148	163929148	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9965.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	6.80346214939156	6.9043701376098	6.70505336920056	5.69008980770294	5.47234548407734	5.78336743426263	-1.98126253033758	7.13485285959021e-12	1.19452079827119e-09
Merged-chr1-186575884-4	chr1	186575393	186576393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17212.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	5.70670802372574	5.65982095826772	5.26009713765618	5.95806123518274	6.22607922405412	5.32706836878613	0.607729954324113	0.123532820835024	0.47040954446207
Merged-chr8-84745758-4	chr8	84745241	84746241	+	923.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	28628.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.37414270984566	3.13498122886088	3.19757124703822	3.86548361150809	3.49563525087616	3.51174726573683	1.49571332162016	0.0176824658530308	0.148843967496104
Merged-chr4-119195795-2	chr4	119195295	119196295	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038998, intron 1 of 2)	MIR3|SINE|MIR	270.0	NM_001038998	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	5.70083123638213	5.62457456941287	5.78765846959623	5.97402087961583	5.67484484746541	5.60885864488654	0.116959343147787	0.715993875760895	0.926538389025079
Merged-chr15-101266015-4	chr15	101265518	101266518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-828.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	7.98278618396528	7.79053912265361	7.71555512550576	7.95897242183097	8.01987702570757	7.56008689939189	0.0464669893297888	0.849608943357107	0.964686793473289
Merged-chr1-74366791-2	chr1	74366291	74367291	+	876.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 7 of 9)	intron (NM_001033345, intron 7 of 9)	4683.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	2.59102374163438	2.68834486609786	2.8826770959402	2.78503197557195	2.71724045152889	2.77603731564432	0.200476311264691	0.785744653165094	0.948164689606319
Merged-chr12-84765473-2	chr12	84764973	84765973	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	7639.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	4.6731521090667	4.49010960991306	4.60864920089228	4.6190525407125	4.65395034591333	4.6749017832111	0.137316820840249	0.737880659550441	0.933858424870961
Merged-chr17-10558884-3	chr17	10558389	10559389	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	Lx8|LINE|L1	102673.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.79900421531748	4.00349077293708	4.14727995242723	3.32098371933797	3.36855218299023	3.54107248781161	-2.06119584279189	0.000506684262580488	0.0105970262982014
Merged-chr4-139602846-4	chr4	139602355	139603355	+	858.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20039.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	2.92005888438855	2.93816268725996	2.73512181984549	3.13549437846022	3.18187285329519	3.24236989737645	1.44741429905921	0.0413463406787414	0.254068851281051
Merged-chr17-71185449-3	chr17	71184958	71185958	+	743.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	1480.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.14040059238072	5.04705118342736	5.1033073352495	5.07199842259172	5.00533881904486	5.09986954239882	-0.0868655600864189	0.809579240640557	0.954749848816598
Merged-chr10-37248751-1	chr10	37248251	37249251	+	954.0	f0_balb.idr	Intergenic	RMER19B|LTR|ERVK	-109825.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.99155210911025	3.8939591406917	4.13070373508327	4.19524355241487	3.90939586827442	4.05942199548655	0.158233664872993	0.750820177737076	0.937652780035956
Merged-chr1-183297002-5	chr1	183296496	183297496	+	974.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181732)	promoter-TSS (NM_181732)	-64.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	7.49879237000744	7.86499610446867	7.63637976411201	7.81589082840942	7.91829979592499	7.66504253004359	0.187597821934501	0.42981289190271	0.795863007201232
Merged-chr13-12302450-4	chr13	12301962	12302962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033268, intron 6 of 20)	intron (NM_033268, intron 6 of 20)	38270.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	2.56449607167546	2.52309801533999	2.64686307742535	2.476003851013	2.44740905001818	2.53358982677793	-0.558766920291142	0.473489856611563	1
Merged-chr10-121370209-4	chr10	121369675	121370675	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	5085.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	4.65154858475158	4.90708690575882	4.94157099485724	4.85848909746483	4.81982694670139	4.97118764397472	0.098886000624404	0.801327561282856	0.952921406285803
Merged-chr1-86501232-2	chr1	86500732	86501732	+	933.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25325.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	3.20709296571737	2.93894759087394	2.90856492545037	2.89409589608027	2.93202645544116	3.04273015342139	-0.34506602507331	0.618663627553299	0.889497316944952
Merged-chr3-7366485-3	chr3	7365986	7366986	+	983.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008862)	promoter-TSS (NM_008862)	-118.0	NM_008862	18767.0	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	2.99156157615426	3.22559905606605	2.99073888084326	2.46950078461573	2.41586454580356	2.68993946705363	-3.86990867040816	0.000170999872509757	0.00441058815616611
Merged-chr4-19703304-2	chr4	19702804	19703804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	5700.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	4.65274606378463	4.73318700681517	4.72176560417977	4.23613274592644	4.5963096016685	4.74961259811035	-0.387193509399995	0.375599100829213	0.758851065703868
Merged-chr11-79278768-4	chr11	79278256	79279256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24061.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.74596556013222	6.49843554001578	6.7533760642581	6.7321752800501	6.68682787067301	6.70330522633543	0.0635984830060421	0.80620097810614	0.954121451132953
Merged-chr1-125427169-3	chr1	125426695	125427695	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	MTB_Mm|LTR|ERVL-MaLR	8532.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.30482079088743	5.36261984109831	5.50045765202598	5.63941787640225	5.37279581039803	5.32234615837788	0.133998733980857	0.696055851660634	0.919291538728398
Merged-chr8-66436651-2	chr8	66436151	66437151	+	681.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49879.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.21796089384374	5.28963334409282	5.76264739156115	5.56377091005822	5.06282802148962	5.46587677472899	-0.116416293393627	0.764910349677057	0.942102569612401
Merged-chr12-116281138-4	chr12	116280616	116281616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028731)	promoter-TSS (NM_028731)	-106.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	7.41701817218454	7.39936235794971	7.35359426806711	7.45087094761299	7.46729511735497	7.47426088427193	0.105932771026809	0.632464210456378	0.895540879841635
Merged-chr7-121075903-6	chr7	121075428	121076428	+	990.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	-1398.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	7.45417164678481	7.89039749070312	7.62983011922702	7.58137063212678	7.55461291075223	7.33578326904024	-0.252817997088955	0.308590624633344	0.70458397876447
Merged-chr6-113680695-2	chr6	113680195	113681195	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16355.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	6.9784235960789	7.15783321194106	7.03265081198608	6.96012177540999	7.09709851859997	6.9107113931062	-0.0954528119616516	0.696070721861061	0.919291538728398
Merged-chr15-78607750-4	chr15	78607264	78608264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 5 of 12)	intron (NM_028195, intron 5 of 12)	10717.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.12445462462604	5.65892297698789	6.24652877044186	6.11711380690135	5.9098848031199	6.10496162470063	0.0297735106900028	0.927376205310633	0.983584626679457
Merged-chr2-170307672-4	chr2	170307189	170308189	+	906.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48672.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.12309687298347	3.04068082953045	2.86632678837657	3.08581410940254	2.90200365959121	3.06440582013528	-0.0126976661132345	0.985235080240636	0.996873682039026
Merged-chr2-104507257-4	chr2	104506755	104507755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12766.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	3.38436086088756	3.19236975294485	3.18710748140684	2.99391363703743	2.90673705307652	3.42261122874505	-0.587040102510515	0.396725774001006	0.773734965167923
Merged-chr11-53890509-2	chr11	53890009	53891009	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	1194.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	3.40018712155754	3.56821210602592	3.44257792191347	3.67443102630389	3.54606090226395	3.39875807375935	0.267537980874858	0.646286733607705	0.900976246381167
Merged-chr9-59724695-2	chr9	59724195	59725195	+	773.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16931.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	3.36664314739892	3.41753701417694	3.28061411800752	2.97863021284211	2.90882175979415	3.40641894793895	-1.05848904552037	0.124412997337856	0.471990000569383
Merged-chr4-129497281-4	chr4	129496787	129497787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6097.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	6.33213547533598	5.7816042358553	6.81934274233583	6.07246616490874	6.00524930019054	6.54765541837714	-0.245331087058632	0.521098890349217	0.846922225237145
Merged-chr17-64941761-4	chr17	64941272	64942272	+	969.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-105701.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	3.92555878036392	4.14380092488501	3.83968207261316	3.8673190095889	3.51305105825701	3.63865429719233	-0.975263066458529	0.0776039220814219	0.367621243868543
Merged-chr14-30216804-3	chr14	30216286	30217286	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136700.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	3.95040573866034	3.80953563901975	3.52036867583362	3.72010485058243	3.65875444275171	3.91313606593537	-0.058229940039399	0.917305573280456	0.981588017376699
Merged-chr2-153215613-1	chr2	153215113	153216113	+	606.0	f0_balb.idr	Intergenic	Intergenic	9828.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	7.40837645809566	7.21784346114386	6.71880477646804	6.57493558357977	6.67493775865955	6.18051695376197	-1.00556748682029	0.00132694649002038	0.0224771411566475
Merged-chr10-99451394-4	chr10	99450877	99451877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157794.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.39029530325002	3.25520175739262	3.31124411290999	3.10542783417913	3.040224511422	3.09397156157274	-1.05863254099276	0.098319527980378	0.418079072168402
Merged-chr3-86960712-1	chr3	86960212	86961212	+	895.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25874.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	4.48293275366323	4.59304105325572	4.1051799111026	3.56715589565822	3.56242792044583	4.02793150835283	-2.11729662392624	0.000168598232090121	0.00435954249118529
Merged-chr2-79699133-1	chr2	79698633	79699633	+	552.0	f1_balb.idr	Intergenic	Intergenic	-8647.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	3.26999063815074	3.18404963900454	3.15073605776488	3.05579863399441	2.99198025662606	3.164594142919	-0.603628682397745	0.350955455943367	0.738927106247438
Merged-chr7-101546476-2	chr7	101545976	101546976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9326.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.56289364784444	5.3323994406826	5.39800618243422	5.15148164457421	4.86909437697081	5.34201098272898	-0.636886188966006	0.0847568990300201	0.385527363171153
Merged-chr19-9937554-2	chr19	9937054	9938054	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-38021.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	6.9974638645356	7.0646229789118	6.71439727957947	6.55289557973326	6.64883080262232	6.24156731326011	-0.684180049464324	0.0148412253985406	0.131618832373256
Merged-chr6-86404252-4	chr6	86403752	86404752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011585)	promoter-TSS (NM_011585)	33.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	8.11967319138757	8.45892739079877	7.79214276164032	8.09752029433603	8.24605271208885	7.90821188686974	-0.0914685138883952	0.727710445370866	0.930204882969987
Merged-chr15-53138409-2	chr15	53137909	53138909	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	ID_B1|SINE|B4	207774.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.02714212482281	5.92013170251554	5.78322216373661	5.20020422963042	5.22883950393001	5.26336809862265	-1.30362018201731	6.36278512710379e-05	0.00193790126228423
Merged-chr4-144995985-3	chr4	144995485	144996485	+	907.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	102848.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.2447115756349	4.52048180978783	4.02966879743556	3.86411468590473	3.86236521491047	3.99867596539879	-1.11730567672334	0.0277420977979464	0.198830801268517
Merged-chr14-103376955-4	chr14	103376459	103377459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30159.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	4.48886200309926	4.44139618990975	4.65974548663136	4.82870036727064	4.53505858159004	4.87274554888896	0.523684336369014	0.21669315378657	0.610234674933933
Merged-chr18-55288757-3	chr18	55288262	55289262	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-296171.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.58315448918132	3.28017510201316	3.33927410125519	3.09103140766281	3.27896260538538	3.2379095084958	-0.815302452454272	0.200721141248587	0.589995927688725
Merged-chr8-112012069-3	chr8	112011608	112012608	+	947.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	749.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	5.39716944254286	5.07573971881436	5.66751394703253	5.04783825231387	4.88887823990449	4.92312526884065	-0.902294772264566	0.020596799230112	0.164552901616818
Merged-chr10-79682901-5	chr10	79682353	79683353	+	879.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	658.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	6.28981672047295	5.80234008591438	6.40799042468211	6.19840447755155	6.17146250035053	6.2827570827711	0.0527009345089307	0.867501921931974	0.96935413537256
Merged-chr7-141488418-3	chr7	141487900	141488900	+	801.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	12020.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	3.15559125600421	2.89812865382901	3.02466701892885	3.07745149947032	2.95552752300139	3.21225761426279	0.22179530635414	0.742845859088949	0.935368371900894
Merged-chr11-114881506-2	chr11	114881006	114882006	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8535.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.36820173120329	5.01372416713862	5.37712577093801	5.23592371573239	4.99451500393754	5.12634303196054	-0.286230125549999	0.442752607766762	0.803309923833629
Merged-chr11-96830064-4	chr11	96829554	96830554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-86.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	7.34806843459488	7.27975760799464	7.63847031128769	7.48637866249646	7.51745726529514	7.38288802673243	0.0631817203426845	0.792058593044229	0.949881259242526
Merged-chr19-37546484-3	chr19	37545975	37546975	+	688.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3943.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.59558645998101	5.48995496403596	5.9105281230022	5.63260334072603	5.56129047634961	5.70883360895566	-0.0636127185834595	0.847579786066974	0.964318271116593
Merged-chr5-143406188-2	chr5	143405688	143406688	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025841, intron 1 of 4)	B3|SINE|B2	2368.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	2.5213172544605	2.62283564456108	2.8182845054534	2.47176273263095	2.57063886801191	2.94662031058808	0.0955429492248709	0.90526058720838	0.978279198518346
Merged-chr11-70374538-4	chr11	70374040	70375040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-22509.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	5.8472798330016	5.88788003802188	5.84143855342722	5.59397872321342	6.15870043434203	6.02020083520942	0.162756653185164	0.618369211657961	0.889302522790896
Merged-chr16-4839060-2	chr16	4838560	4839560	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	L1MB7|LINE|L1	3644.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	6.06812215482089	6.37775084127923	6.24691093681613	6.08555738759655	6.10879357566526	5.796445729407	-0.378440798157304	0.210760839729716	0.603080847079688
Merged-chr2-166996364-4	chr2	166995878	166996878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011490)	promoter-TSS (NM_011490)	-79.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	7.75690564564386	7.82538034662891	7.60910934873243	7.83498415350664	7.83734556057334	7.7213740709076	0.090835218884543	0.678995716329394	0.913553914280182
Merged-chr10-6717348-4	chr10	6716850	6717850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAG)n|Simple_repeat|Simple_repeat	-41243.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	6.37960809755282	6.46271501510811	6.23112797751319	6.24388980033941	6.46652950395896	6.04432468671219	-0.148639608870249	0.611698069862654	0.886279980447713
Merged-chr1-64621460-4	chr1	64620945	64621945	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5b|DNA|TcMar-Tigger	-4277.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.24187976185635	4.11860887757744	4.06978977125692	4.3424343511916	4.27926445161803	4.23558347062791	0.379300960917309	0.41192053679983	0.784137658017569
Merged-chr16-94572653-4	chr16	94572146	94573146	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	1739.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.005214771628	4.92289158066991	4.41622797363744	4.6708813176961	4.38543708225923	4.57689459800067	-0.641595994046308	0.152300867315618	0.520263755512759
Merged-chr3-103852724-4	chr3	103852223	103853223	+	872.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7072.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	3.83661977237942	3.93912630719985	3.85482872443478	4.63709545579039	4.59160115549908	4.54592176856599	1.98322001202645	3.38884138742386e-05	0.00114161422738771
Merged-chr17-7868832-4	chr17	7868336	7869336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57164.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	3.8102270080289	3.4785508638446	3.73396571358642	3.53639699968148	3.29375266809352	4.20054715827182	0.173092902044871	0.791540437041224	0.949766341033746
Merged-chr15-101174843-1	chr15	101174343	101175343	+	557.0	f1_balb.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	771.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	4.72237177023598	4.31410878395851	4.77738686990237	4.94459602900302	4.1480061150254	4.94685909304752	0.258161293622283	0.611026292301388	0.885863926067525
Merged-chr7-46783772-2	chr7	46783272	46784272	+	725.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 6 of 22)	intron (NM_001005247, intron 6 of 22)	12109.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	4.72583584708818	4.57657676903453	5.00786751631704	4.71960352096035	4.62367693169956	4.83204241271031	-0.114425365663155	0.783064249470217	0.946887317181856
Merged-chr7-134556209-4	chr7	134555705	134556705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-114482.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	3.69808858927511	3.53135566486844	3.84901635929616	3.2448213203438	3.25357226496317	3.52311945874309	-1.33186586681786	0.0282664183590028	0.201202224923301
Merged-chr6-113061356-4	chr6	113060844	113061844	+	858.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	15042.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	5.73430917862464	5.96253345261739	5.7644289119342	6.00058846584959	6.06273515574518	6.15228998198169	0.420638337118323	0.160374010869125	0.532965919658045
Merged-chr10-43919200-4	chr10	43918668	43919668	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152603, intron 4 of 7)	intron (NR_152603, intron 4 of 7)	17361.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	2.45773258468262	2.38949756321207	2.60515030234004	2.61475725764081	2.40814892493694	2.42408822867321	0.0158388291111941	0.984326571238769	1
Merged-chr16-33379980-1	chr16	33379480	33380480	+	636.0	f1_balb.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	756.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	5.58025410187624	5.67348594045211	5.97017054220712	5.88734556913528	6.15302241574916	5.65404214802907	0.33202346826032	0.322924392622432	0.716339452448076
Merged-chr9-13560175-4	chr9	13559686	13560686	+	867.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59803.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.30229179201746	3.29648213384923	3.38423595774667	3.17152928646859	3.12559912382588	3.45437009245294	-0.308709742496259	0.62190920086087	0.890882842427285
Merged-chr10-81285864-4	chr10	81285369	81286369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-88.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	4.30415975753462	4.4001727596663	4.34698504986436	4.38563813572956	4.17326237405288	4.08409759004102	-0.343268934913564	0.456700561566807	0.811816712814588
Merged-chr10-4386967-7	chr10	4386465	4387465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	CpG	510.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	7.04935512354309	6.84910351082969	6.88211381914823	7.08661716160733	6.60637252314932	7.20882124187073	0.0802315433443598	0.777775830659148	0.945251190347279
Merged-chr18-42512257-2	chr18	42511757	42512757	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	CpG	770.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	6.8519189874507	6.4310325706581	6.5866845302895	7.38809073548295	7.10613238305082	6.43606349936731	0.628201519178862	0.0589431988016032	0.314224169850147
Merged-chr15-83036356-4	chr15	83035838	83036838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2941.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	5.66545931481139	5.80995252975513	5.63080086228007	5.68548651037621	5.99194216941452	5.57857229081158	0.126634509999851	0.699525948971221	0.920619136555148
Merged-chr11-118482450-2	chr11	118481950	118482950	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 5 of 13)	intron (NR_153103, intron 5 of 13)	5618.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.68050959610481	4.6824544768031	5.1444559400564	4.56991910816058	4.45159116022566	4.26136991518476	-0.964863598937459	0.0326509637343295	0.219967726532758
Merged-chr5-77252705-1	chr5	77252205	77253205	+	680.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-12789.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	2.48713407208415	2.52246330964593	2.6541310250225	2.67862258743286	2.58937091718757	2.72737850452894	0.632717863938943	0.406147186348251	1
Merged-chr4-45084630-4	chr4	45084117	45085117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024142)	promoter-TSS (NM_001024142)	-13.0	NM_001024142	269529.0	Mm.389552	NM_001024142	ENSMUSG00000048232	Fbxo10	FBX10|Gm634	F-box protein 10	protein-coding	3.74033185696158	4.18059026564594	3.8312991300646	3.97247257084387	3.75535069530961	3.79622529082364	-0.292051313285237	0.590008427416544	0.877060163469295
Merged-chr13-112787191-4	chr13	112786693	112787693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-13584.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.74416606834622	5.4645138977333	5.03969006504097	5.85600440281814	6.25001477606806	5.53781267770271	0.845213703197863	0.0348381972646461	0.228938297109199
Merged-chr12-102446776-2	chr12	102446276	102447276	+	864.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6963.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.20355951575399	5.09674248004209	5.30302522950414	5.16937461416869	5.45074119642491	5.36602090214584	0.283957785838949	0.421854739092808	0.790756682370678
Merged-chr7-109616547-4	chr7	109616069	109617069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037617)	promoter-TSS (NR_037617)	-1.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	4.58956580513316	4.26909255505845	4.31626105119006	4.07911502641195	4.16524401716224	4.38373418010092	-0.519755004803108	0.269032471561747	0.666194755066135
Merged-chr7-80203182-4	chr7	80202692	80203692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4751.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.7791767754452	6.8717937922037	6.43388729008866	6.51333235541382	6.59611482974408	5.86082278717719	-0.537607033849885	0.105591719999143	0.433729074246149
Merged-chr5-148956269-4	chr5	148955784	148956784	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6034.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	3.0577727123001	3.01532703073476	3.18870146023095	3.46057977024017	3.50236539401576	3.32028589896957	1.47680047132746	0.0200111649146252	0.161439694610833
Merged-chr3-96273741-3	chr3	96273224	96274224	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4024.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	4.55135060256308	4.469556305004	4.04362968398902	3.34350258234855	3.13600864825717	3.43230063379411	-4.48775422739744	9.94520659895829e-09	8.99479076832741e-07
Merged-chr6-122565619-4	chr6	122565122	122566122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11813.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	5.48091080539865	4.97358347575789	5.29712196995541	5.51720896531397	5.33093737746313	5.61829600295746	0.430268305311505	0.244191926204148	0.641434535959679
Merged-chr9-66895852-2	chr9	66895363	66896363	+	663.5	f0_balb.idr|f0_c57.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23842.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.96490634004008	6.89971015176434	6.58192103660314	6.81681752703704	7.17475931532359	6.77471645396002	0.171972246531508	0.538165249003827	0.855027269644122
Merged-chr16-92443837-3	chr16	92443328	92444328	+	945.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	22341.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.67106913075206	4.55015614017702	4.18761696070933	3.78409614931653	3.39200884142723	3.66476055821959	-2.80933481417013	1.37169284853899e-06	7.15585069224025e-05
Merged-chr6-135170039-3	chr6	135169544	135170544	+	649.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1829.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.54233153128353	3.71885077002048	3.52442344887149	3.30165839862686	3.20769372767447	3.12271216930114	-1.52638198102677	0.0150022953572867	0.132758785005535
Merged-chr3-8964123-4	chr3	8963560	8964560	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	86.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.6138420531388	4.51985113106278	4.27372521501898	4.63519642375755	4.52753649417693	4.52592395909317	0.189490918551952	0.662819891832246	0.90684977442783
Merged-chr17-56268542-2	chr17	56268042	56269042	+	643.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_174989)	TTS (NM_174989)	8225.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	5.44534090650737	5.65193025795829	5.41983371252213	5.5565356230173	5.8792966669178	5.65779543135045	0.365986776164657	0.271594524261423	0.6689720175125
Merged-chr8-88200247-6	chr8	88199707	88200707	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164497, exon 2 of 13)	exon (NM_001164497, exon 2 of 13)	994.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	6.41065521848577	6.31646288743572	6.13095293426627	6.21597450031783	5.64473441345841	6.31329829994799	-0.365061374349857	0.271402640284197	0.668749953195447
Merged-chr11-62281457-4	chr11	62280970	62281970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	-3.0	NM_028360	72795.0	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	7.96995874289329	7.78055938931791	7.38543020703722	7.84927776559418	7.88136158978255	7.43118301915752	0.00112758755835724	0.996689735892426	0.999127275997073
Merged-chr6-136721210-4	chr6	136720679	136721679	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 16 of 25)	B4A|SINE|B4	-59286.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.80829999237968	2.80402753667938	2.76090856997399	3.20464842093362	3.16144743871958	3.08875533297916	1.76099590475706	0.0127698116984897	0.119427952321898
Merged-chr14-109485044-4	chr14	109484589	109485589	+	860.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-570850.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	3.66030371984978	3.6997298050398	3.3142813890548	3.46862787374529	3.66650856961876	3.61909313557491	0.0401962111306429	0.946177686567076	0.98796006280508
Merged-chr17-57228216-4	chr17	57227691	57228691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009778)	promoter-TSS (NM_009778)	-55.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	4.04906637925152	4.1020272060478	3.95161343297087	4.60056253040838	4.11102850256029	3.91491082743307	0.577894796054951	0.271653368333301	0.669017823736756
Merged-chr7-101451171-4	chr7	101450632	101451632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	116.0	NR_152193	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	4.81291672010124	4.77286480417948	4.58009960878709	4.0940990909617	4.03561531556822	4.0418566097842	-1.79291305463003	9.36341497175849e-05	0.00268196569008634
Merged-chr1-149939478-3	chr1	149938983	149939983	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17044.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.71086855724034	5.68646119304627	5.96004192452736	5.60710589069891	5.52749919841432	6.02034427824285	-0.110652858528094	0.743000868953603	0.935417543785804
Merged-chr2-73038586-4	chr2	73038098	73039098	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58152.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.54052450693777	5.37524536094549	5.57099955883699	5.85328115552496	5.49170954426025	5.48956313468676	0.245342965930362	0.469192944515944	0.818913936718213
Merged-chr14-47011851-2	chr14	47011351	47012351	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	10511.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.53881886420628	3.53050756062256	3.53170396799106	3.65747022485716	3.66509944327286	3.80950945032352	0.607484951213427	0.269404568619521	0.66649768267267
Merged-chr18-56708347-4	chr18	56707832	56708832	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010721, exon 1 of 11)	exon (NM_010721, exon 1 of 11)	519.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	6.60493611376407	6.58841742091763	6.7591243260393	6.91934162427317	6.76519755726749	6.80257347878385	0.286685800417252	0.257664565776619	0.655089012134593
Merged-chr10-57777227-4	chr10	57776710	57777710	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7713.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.1678396822629	6.17961139680559	6.41610462600491	5.70020696277641	5.8292603073919	6.25872820486018	-0.537304092732939	0.0923170993327906	0.404737931465454
Merged-chr10-95508230-2	chr10	95507730	95508730	+	994.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6281.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	6.70499698775133	6.59312260142661	6.70214855027066	6.88146428277442	6.90041804178071	6.72898809512441	0.280713964707831	0.264477710763189	0.662371259557422
Merged-chr8-106893623-4	chr8	106893135	106894135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	-5.0	NM_011574	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	8.1847481380619	7.89434701077464	7.44560263106084	8.19801734043824	7.66441238253741	7.7793978685427	0.0261286736776832	0.928511713173002	0.983810947287576
Merged-chr11-8708304-3	chr11	8707803	8708803	+	890.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43768.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.52072593075294	5.38043105877861	5.37177671119798	5.76066174661153	5.41411759330055	5.61085554363811	0.320856556210664	0.341691530965808	0.730935106878357
Merged-chr6-38876338-4	chr6	38875850	38876850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294144)	promoter-TSS (NM_001294144)	-160.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	7.26486882473085	6.86358230891545	7.11011293954257	6.96677410643675	6.34305701762032	6.8322368216278	-0.545499258124282	0.0682495822382175	0.341765400583571
Merged-chr3-90476007-4	chr3	90475458	90476458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026374)	promoter-TSS (NM_026374)	-243.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	5.39635768945019	5.20482002927739	5.4519008577941	5.39236153341117	5.5549803794657	5.26779265741506	0.139974111670592	0.686630394393254	0.916801348262875
Merged-chr17-48337048-4	chr17	48336546	48337546	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	5.18965063322309	4.95135131622862	4.91050989362195	5.26105602826764	5.42434361667119	4.97733307187327	0.450256003158421	0.240075559488111	0.637057344576547
Merged-chr17-80237057-4	chr17	80236559	80237559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12608.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	4.12179168051542	4.34439055520973	4.13100629227503	4.16097197708536	3.97100119075863	4.24534615157853	-0.240068212820432	0.618155705949575	0.889154219224894
Merged-chr2-50943362-4	chr2	50942863	50943863	+	696.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33679.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.36931319299021	4.61409130699168	4.24422672542767	3.8938227594972	3.96769402232117	4.07366560252779	-1.26125851609742	0.00941306281286149	0.0964821545371494
Merged-chr2-124669472-5	chr2	124669028	124670028	+	900.4500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15947.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.34742002958539	4.000232696701	4.39190807872776	4.06802205409876	4.36724626526562	4.53765720950971	0.21708801102987	0.658477722896016	0.905014667687917
Merged-chr9-21002833-4	chr9	21002316	21003316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023167)	promoter-TSS (NM_023167)	79.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	7.25653318226903	7.58680034239688	7.54155132272197	7.3506113833772	7.59109783584214	7.18060502336601	-0.108806960058727	0.670301093871057	0.910029595108128
Merged-chr4-134921004-2	chr4	134920504	134921504	+	933.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2621.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	6.87745844724087	6.84141110750836	7.09649851470631	6.5772097428298	7.24558913651056	6.71758243539227	-0.0688871344999021	0.818346715339316	0.956926747378422
Merged-chr11-118401981-4	chr11	118401482	118402482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-23.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	7.11317779307344	7.61621462630928	7.35601198758846	7.20930299091513	7.62503492737556	7.49668492215133	0.113059453705306	0.674863364531368	0.911865018776908
Merged-chr13-44800228-4	chr13	44799720	44800720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	68949.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.8228824284364	3.85744375623312	3.58978876987304	3.86589737279523	3.78401880148025	3.71795459548583	0.0735062032908269	0.891359880343638	0.974795270136864
Merged-chr11-69267636-2	chr11	69267136	69268136	+	849.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30614.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	3.15689973475757	3.15546465178951	3.08897718986596	3.05352148509649	3.17700575078542	3.16108175344556	-0.0157589766738363	0.980395471374525	0.995512982807197
Merged-chr5-25528167-2	chr5	25527667	25528667	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1851.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	2.29072193651862	2.41230778303645	2.13314139269167	2.34855348483805	2.22001156447353	2.53986348635467	0.558405138919637	0.534711745572633	1
Merged-chr2-142758252-4	chr2	142757732	142758732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 13 of 26)	intron (NM_001355123, intron 13 of 26)	143232.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.44892567059533	4.63841769970157	4.41861551110769	4.200523164702	4.08689275986767	4.16581475493892	-0.966935882521883	0.0333856927352878	0.22298576987621
Merged-chr8-77518076-4	chr8	77517599	77518599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030113)	promoter-TSS (NM_030113)	-192.0	NM_030113	78514.0	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	5.89332827460297	5.67308065558838	5.66190214788983	5.80062799763985	5.51415044308955	5.22142434147476	-0.383504931505412	0.273415849332017	0.670659339634344
Merged-chr11-80301003-4	chr11	80300559	80301559	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139228, exon 1 of 9)	5' UTR (NM_139228, exon 1 of 9)	147.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	3.22868002606725	3.08548121969605	3.36902448599462	3.43556184998597	3.11023866217141	3.38575007494735	0.349281033102892	0.585687049525274	0.875122971140982
Merged-chr1-156674898-4	chr1	156674424	156675424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-585.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	8.22954493280153	8.14645914169593	8.16975858444807	7.9459434249059	8.04530603677112	7.78789217739075	-0.347924420975229	0.104942325069618	0.432279256653108
Merged-chr5-99363285-4	chr5	99362779	99363779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-110352.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.9053097861804	7.86265585388865	7.62899528861309	7.9504206447271	8.10094674647855	7.67602226201498	0.170082429597077	0.478544421005873	0.823834402333981
Merged-chr8-84983569-1	chr8	84983069	84984069	+	973.5	f1_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-4821.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	6.28060518566177	5.99303452722161	6.55729400849265	6.45491013895535	6.01979211981064	6.33796896529932	-0.0156403843970586	0.961021322680224	0.990386809359123
Merged-chr6-83273946-4	chr6	83273439	83274439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166067, intron 13 of 24)	intron (NM_001166067, intron 13 of 24)	36564.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	3.67797144489461	3.58237634516651	3.49458895528719	3.44421105827321	3.1754517406342	3.2134213231741	-1.1897213509456	0.0533704849694331	0.296175224312164
Merged-chr16-92669725-4	chr16	92669228	92670228	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	RMER17C|LTR|ERVK	27601.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.05829573039087	3.82048127826536	4.03527131462016	4.2196164374779	4.11725729557371	3.90256836984733	0.350053011919041	0.486717155922313	0.827985697457807
Merged-chr16-30058577-2	chr16	30058063	30059063	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6794.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	3.00988921741414	2.78836358318519	3.29697965190387	3.16099848208966	2.96146982576051	3.419077000638	0.626044489207552	0.384424730680557	0.765526696623039
Merged-chr7-118115424-2	chr7	118114924	118115924	+	582.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 1 of 4)	intron (NM_170669, intron 1 of 4)	723.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	6.43212139236795	6.5972290574881	6.57282909464058	6.76680361173235	6.61963296528581	6.05801147878743	-0.0105045315183029	0.972811799285263	0.993881982649774
Merged-chr3-69669745-4	chr3	69669237	69670237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-52318.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	7.37151449195072	7.78851354568172	7.36396994664412	7.67355763094925	7.88549005470703	7.63731210247593	0.304671764158655	0.228019974760846	0.623028472068449
Merged-chr10-96267789-3	chr10	96267306	96268306	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41599.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	2.87044684763163	2.85327210217074	2.68233780486738	2.93631151745971	2.84715174163565	3.06485854588313	0.680467598684026	0.344412390228663	0.733050242138093
Merged-chr18-36510285-15	chr18	36509798	36510798	+	775.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	5507.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	3.19717945755729	3.00397939434263	3.01051299642798	3.03670930726113	3.16173926556465	3.25637517514099	0.33405928638826	0.612250273102929	0.88667863065614
Merged-chr5-117374951-7	chr5	117374424	117375424	+	996.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 5 of 8)	intron (NM_021539, intron 5 of 8)	14099.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	7.04240194691317	6.81107719409436	6.78318433269223	7.02523884605781	6.87827141802368	6.74677809070918	0.00596843436009056	0.981558162200563	0.99571978194797
Merged-chr8-33606566-5	chr8	33606050	33607050	+	853.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	RMER6B|LTR|ERVK	6929.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	4.49679533107875	4.8207500884671	5.05733586766536	5.47891316874551	5.26364603136246	5.22121221722438	1.1172767733276	0.00506584311293864	0.0617248021293598
Merged-chr17-56255571-2	chr17	56255071	56256071	+	800.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1222.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	3.92982160947012	3.83291044123949	3.7670517820724	3.89570125001135	3.7656299609487	3.98656136956126	0.0953510403815388	0.85375400695682	0.965800621328663
Merged-chr8-72815956-3	chr8	72815452	72816452	+	963.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010687, exon 15 of 15)	exon (NM_010687, exon 15 of 15)	54293.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	2.54863684174694	2.44273832407036	2.6222598976545	2.39205162984444	2.21193361765251	2.37933745021494	-1.39330869975521	0.101898959365438	1
Merged-chr9-110841052-3	chr9	110840536	110841536	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153172, exon 6 of 6)	exon (NM_153172, exon 6 of 6)	-3470.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	3.72170309922391	3.54740308265815	3.72303702222144	3.6597556718228	3.54576678191117	4.1979226744766	0.515560196895222	0.380303198344021	0.762464628759352
Merged-chr9-45487351-1	chr9	45486851	45487851	+	737.0	f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-56119.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	4.66205182200254	4.25743785883638	4.40399161527346	6.24242567297871	6.45389000101842	5.92362659164374	3.66673075857725	9.5504049418206e-18	4.48966155027688e-15
Merged-chr17-37029521-2	chr17	37029016	37030016	+	905.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6118.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	4.66885451834874	4.52330866813316	4.46264967479231	4.50560453930718	4.72464682709759	4.24753575816183	-0.0885047200201445	0.844542277993132	0.96373428957366
Merged-chr1-134099306-4	chr1	134098795	134099795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11947.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	8.54940195086502	8.53405212395894	8.12175656924678	8.1158261104553	8.52132053208648	8.02198724692371	-0.244988029811853	0.339469647090563	0.729301861431711
Merged-chr3-88624324-3	chr3	88623859	88624859	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2965.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.51786853328055	6.42113794347218	6.75392037039276	5.90610298466985	6.32176655309416	6.25341849337627	-0.636861740916164	0.0329882708044739	0.221397647773727
Merged-chr18-60716907-4	chr18	60716394	60717394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	10672.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.06087909943089	4.83300763025819	5.23340627201125	4.61655401398619	5.01466180245833	5.11054078937172	-0.248873608716229	0.544249138269693	0.85765692399006
Merged-chr9-120128196-2	chr9	120127696	120128696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011029, intron 1 of 6)	intron (NM_011029, intron 1 of 6)	430.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	7.64692822434008	7.8329627087771	7.90629648256254	7.51010043456372	7.68564062101826	7.93274967404931	-0.115982116140593	0.629328504394629	0.894177193823197
Merged-chr11-101656940-2	chr11	101656440	101657440	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-8601.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	3.04080518089863	3.13254761725535	3.23485606781459	2.97952048002109	2.90640466283409	3.3053702876808	-0.301208069367541	0.657107311638994	0.904749338441592
Merged-chr14-103012724-4	chr14	103012234	103013234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	21069.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	3.40635179176089	3.3758391893072	3.29819825809537	3.62198743747	3.39957952003433	3.74666527312009	0.835132140903998	0.161476839934995	0.534453655422079
Merged-chr5-92292676-1	chr5	92292176	92293176	+	764.0	f1_c57bl6.idr	exon (NM_172713, exon 14 of 22)	exon (NM_172713, exon 14 of 22)	-14495.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	2.82897793545568	2.78765365339625	2.81416829198164	3.08564094965488	2.88077517907263	3.34582275543911	1.42462076001788	0.0480158572324389	0.277837513810624
Merged-chr16-57309963-1	chr16	57309463	57310463	+	816.333313	f0_c57.idr	intron (NM_025599, intron 6 of 9)	intron (NM_025599, intron 6 of 9)	-17112.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	2.15633268874051	2.23959254124601	2.18676140966744	2.42275953716156	2.2882153226515	2.52355081438501	1.47346201128686	0.0918773247649904	1
Merged-chr12-86892446-6	chr12	86891859	86892859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.62176559914754	6.43365480935077	6.60547869453931	7.24730664009669	7.45798314419299	7.27454280571462	1.19757100133775	1.52523442751282e-06	7.83889476494669e-05
Merged-chr1-184032813-2	chr1	184032313	184033313	+	918.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028516)	TTS (NM_028516)	1185.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	5.98156698754323	6.09903401703837	5.96061895730404	6.12339224917072	6.04735022957903	6.04492762706946	0.0920298517416254	0.748621329510129	0.937087780077821
Merged-chr6-134366854-4	chr6	134366349	134367349	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-29480.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.64122621522218	4.28733649791169	4.2268238346449	3.55681598688337	3.44761344133533	3.68060260760238	-2.79817644896408	1.13288303844476e-06	6.04649979877559e-05
Merged-chr1-161359534-3	chr1	161359024	161360024	+	791.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35914.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	4.58571856765919	4.3247245031259	4.10821418432983	4.43254099218057	4.32788973533198	3.84499409855156	-0.333482520691521	0.52931646856496	0.850855728615188
Merged-chr2-25706726-2	chr2	25706226	25707226	+	745.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023326)	promoter-TSS (NM_023326)	-153.0	NM_023326	107771.0	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	2.65240197083762	2.64254813076684	2.83861937785303	2.90728450529705	2.33089052645331	2.72912213254653	-0.168294296977323	0.843725934866754	0.963622916593135
Merged-chr9-119418234-3	chr9	119417741	119418741	+	967.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	16063.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	3.49542873407054	3.54606695501718	3.78511397893718	4.47654735328133	4.19983610209035	4.33398884548183	2.32270046520562	1.65264484145632e-05	0.00061887161101664
Merged-chr2-170164329-4	chr2	170163803	170164803	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21628.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.61546685042648	3.39098548064024	3.53843332905506	4.32587268080739	4.10140908278039	4.35284837033894	2.41737538331943	1.73234020814927e-05	0.000644653685329535
Merged-chr12-4211267-4	chr12	4210771	4211771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 19 of 21)	intron (NM_001159537, intron 19 of 21)	22694.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	6.13340086743231	6.24112435063108	6.05460310184921	5.82823830684523	5.99386342184431	6.04818199650961	-0.330800432358648	0.257324881700885	0.654645450715971
Merged-chr8-117255410-2	chr8	117254910	117255910	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1609.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.77125553312338	4.42524450621665	4.77516449250528	4.71053198210238	4.52276754796973	4.64871015403422	-0.0863285045015696	0.839330161217879	0.962784121274377
Merged-chr4-53355134-2	chr4	53354634	53355634	+	913.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84902.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.68765455161771	3.69755034780541	3.26722467246657	3.50283225654822	3.4482962581965	3.46224629900278	-0.373182773344545	0.539278283620298	0.855849474290651
Merged-chr2-124617552-4	chr2	124617028	124618028	+	818.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	7232.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.88640977578157	5.68026178663825	5.94488501086553	5.71074268492368	5.98140633909469	5.95999312483486	0.0979058792917704	0.753748454634576	0.938570691167124
Merged-chr5-105055285-2	chr5	105054785	105055785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	4.25683377181966	4.31572491946249	4.2092992757785	4.39865811248975	4.32685168154617	4.57696562970918	0.434332265710771	0.332876559798164	0.723927708416112
Merged-chr4-138023631-1	chr4	138023131	138024131	+	735.0	f1_balb.idr	intron (NM_001355699, intron 1 of 32)	MTD|LTR|ERVL-MaLR	25806.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.54650892319197	4.59685319047334	4.3784801039378	3.47229138881347	3.65354440992937	3.8182505880334	-2.70668726219575	1.10328772836331e-06	5.89232126454778e-05
Merged-chr6-125165184-2	chr6	125164695	125165695	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001289726, intron 2 of 6)	CpG	578.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	8.13307696408092	7.84776640644795	7.80548633977596	7.75302793163819	7.84523334269125	7.88635948469041	-0.161364753355266	0.477956682389381	0.823528112901839
Merged-chr1-36087300-2	chr1	36086800	36087800	+	637.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	18900.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.95841069016354	6.25672628783908	5.98095011815211	5.76226607338032	5.92752630856123	5.74077797383446	-0.45135547253957	0.143422097852695	0.505503903555525
Merged-chr5-98033226-4	chr5	98032723	98033723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2261.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	3.02129265219969	2.88525189551611	2.85865196511843	2.51960599798635	2.43163310324695	2.54783957955113	-2.72047819061626	0.00162532841543042	0.0263721309044538
Merged-chr7-31115753-4	chr7	31115273	31116273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008281)	promoter-TSS (NM_008281)	-447.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	7.78492995460983	7.69074297634887	7.61345982067632	7.69557709824953	7.69331332579048	7.67008224556628	-0.0211825602455099	0.922285605348918	0.982542868764899
Merged-chr9-59541742-6	chr9	59541358	59542358	+	749.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	2318.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	7.0378478636559	7.05979887818792	6.92381667969143	7.3374248017404	7.19363376157597	7.264855614874	0.379274098071571	0.108287011352055	0.439562011040003
Merged-chr4-147432412-5	chr4	147431895	147432895	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-120882.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.9454549727389	4.37418482079638	4.18479279681032	3.91250585060137	3.83613877859149	4.78185793103313	0.185829845748895	0.752032114924786	0.938053911816822
Merged-chr1-127205719-2	chr1	127205219	127206219	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	733.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.57623719682566	6.91678941357436	6.82975184289825	6.83641054189735	6.97584061768639	6.94494483722659	0.216107881968545	0.404598389858733	0.779747209915063
Merged-chr10-8744087-2	chr10	8743587	8744587	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 12 of 19)	MTEb|LTR|ERVL-MaLR	141983.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.11230191480305	3.19990295736854	3.80023987715921	3.24555999593884	3.56717195975861	3.42700371148717	0.064817695105191	0.924208395481898	0.982917919313605
Merged-chr8-46011469-2	chr8	46010969	46011969	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026278, intron 2 of 8)	intron (NM_026278, intron 2 of 8)	867.0	NM_026278	67620.0	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	2.43268038468676	2.39670806605222	2.45560054131603	2.45724815786762	2.38319930322096	2.59147484831309	0.29730548346931	0.709555479944614	1
Merged-chr14-99046280-4	chr14	99045792	99046792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	-85.0	NR_153765	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	7.03830717431438	7.23292369325498	7.00991209851047	7.24757397511003	7.25031493669187	6.84851382869934	0.0558975395349018	0.829599620745236	0.960125413857885
Merged-chr12-116432121-1	chr12	116431621	116432621	+	581.666687	f1_c57bl6.idr	intron (NM_133762, intron 16 of 28)	RLTR19-int|LTR|ERVK	26719.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	3.37046220182887	3.48543417319998	3.60267237586933	4.64103323627721	4.54363700652698	4.90605699892806	4.07545512096364	1.69204035909623e-10	2.14948540762869e-08
Merged-chr1-191396248-4	chr1	191395746	191396746	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144880, exon 1 of 13)	exon (NM_144880, exon 1 of 13)	795.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	7.3542461970915	7.25188625029779	7.40351871715162	7.59803721021716	7.49103560193698	7.58977128814758	0.328419038725156	0.144430843289274	0.507201164636624
Merged-chr15-41788837-4	chr15	41788394	41789394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	-101.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	7.33542306803353	7.3825439860697	7.33632451239054	7.23779404067125	7.01016418010856	7.02790967345499	-0.383029441246501	0.104916849310439	0.432217110477423
Merged-chr18-10177939-2	chr18	10177439	10178439	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 1 of 32)	intron (NM_009071, intron 1 of 32)	3853.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	4.30128567592237	4.6483034095392	4.49934590384594	3.93176440148097	4.33284349027506	4.60436728983564	-0.456540266101591	0.360806657278632	0.746938274913623
Merged-chr7-121280373-4	chr7	121279879	121280879	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-111917.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.56372320958474	5.54348312991087	5.80143075366371	5.12823316716183	5.1988203601235	5.59148424866929	-0.626331840244506	0.0776301336806449	0.367682614031142
Merged-chr5-149636738-4	chr5	149636244	149637244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-408.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	4.61710605149457	4.92783593154616	4.9027311714676	4.79731306936522	4.7333010769806	4.78320603649051	-0.116564204819986	0.771109571866029	0.943576844936255
Merged-chr11-69031865-3	chr11	69031350	69032350	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-13787.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.92883396257449	6.06092343501069	6.01963537543845	6.177823098156	6.28114557582365	6.57373872987657	0.577887610812602	0.0494580851530428	0.282787894931493
Merged-chr11-69398199-2	chr11	69397704	69398704	+	769.233337	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025915)	promoter-TSS (NM_025915)	30.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	2.34347596495412	2.17143963571234	2.18795458745078	2.42192959944539	2.23206451773137	2.46232145837199	0.89397926885972	0.304249032498384	1
Merged-chr8-122983355-1	chr8	122982855	122983855	+	678.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	58929.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.21538548580481	6.4077065284816	5.54880629339968	4.60220201040263	4.37469290871277	4.87332134167724	-3.0919694971752	2.79765498444431e-13	5.90830649608229e-11
Merged-chr10-13324228-4	chr10	13323747	13324747	+	905.8833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033257)	promoter-TSS (NM_001033257)	42.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.37836692256259	5.42941545024282	5.21606937189328	5.44846751534365	5.2221283424589	5.34527830512929	-0.0278492633772285	0.935749552892975	0.985944885089269
Merged-chr6-36989587-3	chr6	36989081	36990081	+	830.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 20 of 32)	intron (NM_001347104, intron 20 of 32)	-179402.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	2.42537869316993	2.66943226416454	2.5723393188907	2.35177677117283	2.25580587821107	2.38949572725622	-1.51426742278496	0.0752336456383209	1
Merged-chr18-38432173-2	chr18	38431673	38432673	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	ORR1A4|LTR|ERVL-MaLR	13266.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.27168564323985	3.22179500359622	3.57284290286532	3.54382575917507	3.47801508330246	3.69232949834702	0.803890746201366	0.181679253350116	0.564138920563373
Merged-chr7-17003397-3	chr7	17002901	17003901	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	8813.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	3.08573732514831	3.29034206111625	3.43830654709141	3.34876243217635	3.21908891254153	3.75332032928442	0.682351069961724	0.295491639666379	0.692413375009256
Merged-chr17-23803562-4	chr17	23803071	23804071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	CpG	384.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	8.55539700400325	8.66943143654387	8.28238808090524	8.47302109340921	8.50301721942389	8.59243595039685	0.00573007230671027	0.978983682739113	0.995160277495735
Merged-chr8-85513415-4	chr8	85512889	85513889	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	MER5A|DNA|hAT-Charlie	20772.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.99916563369743	5.2235274948281	4.88499919196243	5.07907015614905	5.20781298622143	4.65655936538792	-0.0725419241721557	0.859893053174678	0.967435965660262
Merged-chr2-126491636-4	chr2	126491149	126492149	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080944)	promoter-TSS (NM_001080944)	-96.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.87959629048029	4.01975972416672	4.00073207879276	3.49054563762504	3.71513872712538	3.61237017215804	-1.15766215697597	0.0347019293322436	0.228367457756827
Merged-chr7-4915401-4	chr7	4914889	4915889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_170759, exon 1 of 3)	5' UTR (NM_170759, exon 1 of 3)	172.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	6.82644825623411	6.83394316463668	7.06345998682692	7.01665321486466	6.89768204583916	6.77098874722723	-0.00392409226188033	0.987667381708161	0.997223245230291
Merged-chr8-36130384-3	chr8	36129860	36130860	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 4 of 5)	intron (NM_172911, intron 4 of 5)	-25650.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.52733693162116	3.61258178687259	3.53518304861574	3.27094665562339	3.42539654533691	3.13706616146951	-1.02214152978779	0.102932787362968	0.427792386539026
Merged-chr5-102029512-2	chr5	102029012	102030012	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	40409.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.60608171901702	6.51702340716684	6.73698930866745	6.7308589341363	6.92459565577726	6.58270088142721	0.231161983791963	0.386190323367335	0.766979386557564
Merged-chr16-91464993-4	chr16	91464480	91465480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077219)	promoter-TSS (NR_077219)	-124.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	8.59451842422575	8.54177192366513	8.24803717102506	8.53513234144578	8.81727063854512	8.16663027219388	0.0937270002915598	0.714688765331336	0.926032699797971
Merged-chr16-4675856-2	chr16	4675356	4676356	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 2 of 27)	intron (NM_030205, intron 2 of 27)	3864.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	2.79764914843807	3.1864037000233	3.09587263449692	3.28551757186434	2.75721096133345	3.28175908555613	0.401632210989812	0.593360954270084	0.87844954599148
Merged-chr19-12010111-2	chr19	12009598	12010598	+	823.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	26642.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	6.34714145404069	6.37713633184581	6.2950841607151	6.39470465557811	6.59266642946763	6.43241540018238	0.226632535951371	0.399410350414944	0.775836330770912
Merged-chr6-134173523-4	chr6	134172995	134173995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	137795.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.62439154842801	6.35504322352523	6.34430810558386	6.18161463039667	6.37657673329869	6.42300901988263	-0.200816717804996	0.476146553460921	0.822350500651259
Merged-chr6-116264201-4	chr6	116263695	116264695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-24.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	6.24670507248818	5.95698236429183	5.84586096202681	6.25660027864872	6.21463258400683	5.8555362756646	0.161799130010198	0.60909498234092	0.885053989692691
Merged-chr5-88564042-2	chr5	88563542	88564542	+	720.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-998.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.10266479451113	7.04363666735189	6.56276447403743	7.23185529595414	7.40809707281502	6.7482390120375	0.354648411292209	0.246710381731158	0.643782025373544
Merged-chr7-99379179-2	chr7	99378679	99379679	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	4.09610084742845	3.96972528107452	4.47524019635791	4.30197090361137	4.11570938231516	4.75619290501892	0.583772663883175	0.259788589819105	0.657375816734121
Merged-chr9-38719170-4	chr9	38718665	38719665	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 1 of 18)	intron (NM_001145957, intron 1 of 18)	897.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	5.31218925628095	5.31443487373367	5.16729353542694	5.47112171869961	5.60506666493933	5.00967273324872	0.25841871125088	0.489868199513483	0.829956939079416
Merged-chr8-11465440-4	chr8	11464928	11465928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B2_Mm2|SINE|B2	-12501.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.23573529091876	8.26419409934351	8.05965993214233	8.18066119557192	8.16108004476092	8.01986785877729	-0.0961118782437325	0.650754010408163	0.902668504553081
Merged-chr2-32395139-2	chr2	32394639	32395639	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-751.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	4.6897494761759	4.74229657426596	4.66794333913076	4.91577513417775	4.70502400179368	4.56588983093962	0.0911599641746913	0.823264495630352	0.958260248893634
Merged-chr12-91668119-3	chr12	91667567	91668567	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-77580.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.71505521834171	4.48357273644367	4.13201574400307	4.10760970932732	4.08956017862001	3.87790112897224	-1.19272562676257	0.0188879538942476	0.155499046960775
Merged-chr2-27593497-4	chr2	27593007	27594007	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78360.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.61374612608317	3.49688800469855	3.81784871177276	3.44181808105436	3.37280243610145	3.48181056897267	-0.776565483937813	0.181361762085226	0.563676583728803
Merged-chr5-135187098-4	chr5	135186564	135187564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011714)	promoter-TSS (NM_011714)	-259.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	7.27319921208536	7.56456112900348	7.45236351070733	7.47092072737587	7.53161921744604	7.52942763665163	0.109716908906957	0.635781334783164	0.896797678725484
Merged-chr2-35505641-3	chr2	35505109	35506109	+	762.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44160.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.70122898611637	3.60358241700738	3.41687060387269	3.20976484015045	3.09543187121907	3.37529473065641	-1.44345273333038	0.0215098503945627	0.169536007542936
Merged-chr5-101766957-4	chr5	101766453	101767453	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1823.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	7.05573395610709	7.10067277418407	6.91359808278598	7.10350556454519	7.42294094239417	7.05596962338028	0.276908925088018	0.277232191556369	0.674441896764095
Merged-chr17-29397660-2	chr17	29397160	29398160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	36746.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.44292317639064	5.23758981093183	5.70144573306581	6.32890333433292	6.18004394348204	6.36748145326786	1.47885413931151	3.39198393947459e-06	0.000157676089182012
Merged-chr11-75570475-1	chr11	75569975	75570975	+	599.0	f1_c57bl6.idr	intron (NM_001199284, intron 11 of 13)	intron (NM_001199284, intron 11 of 13)	-17604.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.8309903783901	5.42098808878504	6.33224123442018	6.04405148765452	6.21485908735821	6.24446037448407	0.457000177474429	0.207425740866844	0.598198975150602
Merged-chr11-80058811-2	chr11	80058311	80059311	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 4 of 7)	intron (NM_018776, intron 4 of 7)	22180.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	3.32315228400126	3.04011310103235	3.42095186246032	3.06173126937005	3.16347983227179	3.22031266657295	-0.491083855430935	0.453060995242474	0.809584436639875
Merged-chr7-38061254-4	chr7	38060747	38061747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-41695.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.20553494278164	3.98717030540368	3.71167366671931	4.04434813081159	3.79387455216305	3.89359461456287	-0.240399643473201	0.654202849503775	0.903708984834566
Merged-chr5-99217497-3	chr5	99217015	99218015	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145839)	TTS (NM_145839)	35412.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.21981081924335	4.00770646139278	4.23343841393135	4.07130426501667	4.11034790924741	4.4257977560545	0.136670088649442	0.777750203047117	0.945251190347279
Merged-chr14-122913099-4	chr14	122912572	122913572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155287)	promoter-TSS (NR_155287)	42.0	NR_155286	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	3.78679238019411	4.02042724974836	3.73734096009712	3.5863651751948	3.3137541657396	3.64912585948661	-1.19206564447808	0.0393905987328915	0.246492662959046
Merged-chr7-34198072-4	chr7	34197564	34198564	+	818.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1394.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	3.59733909163004	3.8636777724138	3.75162107598065	3.84838412963371	3.84865267947498	4.15204589301614	0.650550937164391	0.225367463264793	0.620200471451538
Merged-chr18-73754448-4	chr18	73753970	73754970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053255)	promoter-TSS (NM_053255)	9.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	7.16982086787174	7.12044452643065	7.18368675070564	7.30024688436524	6.82584836425808	7.01220762576603	-0.148212992666628	0.567761703645894	0.868309005726251
Merged-chr16-85173754-4	chr16	85173263	85174263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-56.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.82674633342946	6.92621714208866	6.88217213033653	6.77834411535284	6.59773064662636	6.55969861645791	-0.357405764434937	0.15851662285293	0.530321210019543
Merged-chr14-31169782-2	chr14	31169282	31170282	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-1141.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	3.076303352454	3.11010392285477	3.58012160849642	3.07417032566269	2.84664944348263	2.94561569851123	-1.38343259325114	0.0525895619589999	0.293367677090672
Merged-chr4-42947041-4	chr4	42946543	42947543	+	942.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2824.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	2.48124175239038	2.44569529480132	2.67467777681325	2.54602320320993	2.40404635804821	2.8063948689806	0.324282821422443	0.687217512485346	1
Merged-chr11-115165771-1	chr11	115165271	115166271	+	818.0	f1_balb.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	2430.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.9193497603118	3.47137783965663	3.8085152771967	3.96582202884667	3.84262154305707	3.66550520503274	0.280964845019812	0.619366806234172	0.889749463061948
Merged-chr17-63921797-4	chr17	63921291	63922291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286415, exon 4 of 18)	exon (NM_001286415, exon 4 of 18)	-16181.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.17594388539188	5.26172071876865	5.25537885445416	5.00669999232148	5.1789471640174	5.19096416934377	-0.210198702856018	0.553428169774552	0.862251545920931
Merged-chr5-92509125-4	chr5	92508589	92509589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3432.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.74660457507692	6.65879425295007	6.8540051669693	6.89883012323611	7.20749578984986	6.86852166232907	0.401072037609135	0.124198921838576	0.47158637803889
Merged-chr7-128381968-2	chr7	128381468	128382468	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36204.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.58092632985945	4.51911422270344	4.60244210028741	4.26347185072915	4.22025378977516	4.37945652333953	-0.731140396705098	0.0931448389991933	0.406562272750191
Merged-chr17-40763845-4	chr17	40763344	40764344	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009420)	TTS (NM_009420)	30302.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	3.12125522717066	3.04279275991466	3.24307189954338	3.34822589375202	3.32832984626798	3.42464327729354	0.96860612491461	0.120859267097239	0.464932449718459
Merged-chr10-117304561-3	chr10	117304055	117305055	+	777.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11687.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	3.33082911047365	3.61066468491547	3.65000902499964	3.41363460215478	3.32151449203322	3.66938794336369	-0.243929294101811	0.68546320722362	0.916264475254709
Merged-chr11-116418720-3	chr11	116418222	116419222	+	633.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5690.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	4.0615311797416	3.85317983762474	3.81476878428215	3.79788835091585	3.92152977341056	4.12589361721933	0.0939153250939281	0.85640735214795	0.966511724796575
Merged-chr4-155519487-4	chr4	155518986	155519986	+	708.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 2 of 11)	intron (NM_001160016, intron 2 of 11)	28125.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.09419428283978	4.20448662762868	4.3565063543816	4.46285993777752	4.6225819989706	4.42408696326515	0.778493814902945	0.0829349348600966	0.380987557121549
Merged-chr6-120040835-2	chr6	120040335	120041335	+	857.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2180.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	3.69145934297709	3.64554268762493	3.52892628848124	3.68770897639641	3.66053137644331	3.48618310563865	-0.0291932194332527	0.958433026206593	0.990047240190664
Merged-chr10-13835874-3	chr10	13835376	13836376	+	962.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	33081.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	3.55477041524486	3.49812567901921	3.25654236470553	2.95714168279035	2.88971818485059	3.02277564082768	-2.29716954481559	0.00105997410734981	0.0188498237923409
Merged-chr11-11690258-4	chr11	11689637	11690637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301866)	promoter-TSS (NM_001301866)	-40.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	6.76015320142789	6.8380723274068	6.7190346436489	6.70806284231887	7.01024192711077	6.98193797880057	0.204631780796428	0.424936311869406	0.792848465017231
Merged-chr12-112621572-2	chr12	112621072	112622072	+	853.714233	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	1525.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	2.92835114250908	3.08168584733007	2.94742520046084	3.06133196927457	3.10397245956021	3.08094697064568	0.420284894740902	0.527416551507965	0.849959198694232
Merged-chr14-21148547-4	chr14	21148062	21149062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	72410.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	3.80317692830228	3.90291664306826	3.75720056575347	3.87130740742366	3.45884302808135	3.8778201143525	-0.267211769307649	0.632825374565144	0.89574098438065
Merged-chr15-80133130-4	chr15	80132644	80133644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-10.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	6.9072261616919	6.86628201722122	7.247232913148	7.05015390099674	7.00244441655171	6.91611039666638	-0.0237277964988163	0.926444299085421	0.983505361373771
Merged-chr14-21854103-3	chr14	21853608	21854608	+	847.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-5198.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	3.33072814419865	3.44207062935763	3.3755840094282	3.56433868025922	3.53862323796594	3.71059086080645	0.808174723771765	0.162343471096385	0.53582993535478
Merged-chr5-123724305-2	chr5	123723805	123724805	+	755.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3261.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	2.81419793001703	3.12825419966498	3.22739620139078	3.05664581708608	2.98568556079965	2.95176264043697	-0.296195597228341	0.671246315192847	0.910400381329525
Merged-chr3-144204695-2	chr3	144204195	144205195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	CpG	560.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	6.15123175297858	6.25481132173716	6.3950805738223	6.2786414144025	6.23514686933172	6.65342997208881	0.209235347178035	0.475879566496046	0.82219557869602
Merged-chr17-34028111-4	chr17	34027613	34028613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-58.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	6.10119908982363	5.86030077986935	6.12180488048656	6.43876646430644	6.22465962211695	5.87437699357804	0.306096458420741	0.331653657156275	0.72297130356206
Merged-chr1-51479911-2	chr1	51479411	51480411	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.38371057611867	5.83268373659773	5.70205995142378	5.42494568987793	5.80376431388355	5.78896133118494	0.0586487645232309	0.866385307643145	0.968980196757585
Merged-chr3-89902298-2	chr3	89901798	89902798	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	10898.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	2.90816294736432	2.79910517079493	3.07183928083463	2.96712591742512	2.9157106360915	3.14318084509434	0.38529943532215	0.576921788673189	0.87187513064165
Merged-chr6-116016539-3	chr6	116016045	116017045	+	799.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21540.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.15840776202061	3.99338416198892	4.07376020906307	4.03081687543358	3.68094018990646	4.14191106589217	-0.361310126011136	0.487342124044135	0.828421837588934
Merged-chr11-106216886-4	chr11	106216371	106217371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-55.0	NM_001361643	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	8.02583181500597	8.19328522786441	7.95352711643488	8.07420171708578	8.28108555554734	8.04717458031076	0.109755737663763	0.618826115994491	0.889515655407396
Merged-chr8-79161608-4	chr8	79161094	79162094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	ORR1D2|LTR|ERVL-MaLR	86989.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	4.305574624851	4.36417407302387	4.19262231910524	4.39253567264781	4.13813720154772	4.11569838395509	-0.194471298248334	0.677083649712576	0.91268374750576
Merged-chr11-69043924-3	chr11	69043421	69044421	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.9131255464426	5.48543923966113	5.86755620366018	6.07986306414535	6.29437490624651	6.36779876873504	0.842762277855243	0.00784444510721958	0.0848460403589662
Merged-chr4-101660672-1	chr4	101660172	101661172	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	12889.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	3.63348646854565	3.62104864751347	3.91199777083161	3.76462283627682	3.46870271678162	3.93386956198083	0.0177583535321115	0.975202192449705	0.994454548709104
Merged-chr4-136120212-4	chr4	136119712	136120712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23610.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.45303083998512	5.42517534808368	4.78918900638283	4.93918810939608	4.84951748047796	4.85750139278805	-0.815747211112111	0.0458400540311873	0.270514838001917
Merged-chr14-30716268-4	chr14	30715792	30716792	+	992.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	CpG	677.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	8.41199170728826	8.59113135824379	8.17146621044634	8.41764066353703	8.33671116328901	8.10752639108209	-0.154763972070694	0.504762310020855	0.837826895914927
Merged-chr3-5577090-1	chr3	5576590	5577590	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-842.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	6.66586004357367	6.92461507212154	6.60622471965722	6.65413070375342	6.60803388666242	6.83803950100358	-0.078184262176689	0.769723911412991	0.943207535850597
Merged-chr5-36792847-2	chr5	36792347	36793347	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3907.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	3.80395916644754	3.83495489792131	4.27740392294121	4.046888844601	3.67925534565351	3.99560712794958	-0.207886438507735	0.704116722224921	0.92237304068754
Merged-chr17-88063067-4	chr17	88062572	88063572	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	1860.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	6.21787801355835	6.10935400099475	5.62330061637391	6.04190568771644	6.34951201837909	5.7174459304236	0.0958158930191326	0.787372855995193	0.94877064431094
Merged-chr13-74759359-4	chr13	74758871	74759871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301153, intron 3 of 31)	intron (NM_001301153, intron 3 of 31)	11365.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	2.70034403953636	2.91275864851905	2.7530316739313	2.94072525869942	2.85021288868716	3.12484638177571	0.865190493314873	0.231566279084448	0.627507317118448
Merged-chr11-116085968-2	chr11	116085468	116086468	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361446, intron 1 of 6)	intron (NM_001361446, intron 1 of 6)	1027.0	NM_001361446	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	5.47561202652958	5.35849363909995	4.9898908307049	5.59375288122688	5.04159824605846	5.09479107126157	-0.0595277125427658	0.88200819673652	0.973002238292341
Merged-chr1-91024132-4	chr1	91023634	91024634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25407.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.89312096199095	6.88703162135955	6.62326990839427	6.58636038738788	6.78282311831667	6.27664039339992	-0.367207374884139	0.198455925051569	0.586757652407026
Merged-chr11-80042645-2	chr11	80042145	80043145	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38346.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	4.44746406944177	3.95970819270476	4.39801186692766	4.26132502163993	4.09110488975738	3.8957068207262	-0.519456180298573	0.314062827680671	0.708455164540049
Merged-chr4-101720802-3	chr4	101720228	101721228	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	3321.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	4.63275494591197	4.68506442279749	4.63964778183338	4.04073075800469	4.18010168048231	4.37812777520649	-1.17842121591431	0.00861400873634384	0.0908347888063229
Merged-chr18-50111435-4	chr18	50110936	50111936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16765.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	5.64621744175139	5.95144714345999	5.90069398950329	5.06299882740922	5.18720277214828	4.95411526074869	-1.4591459897221	3.8062078026903e-05	0.00125829033929385
Merged-chr10-118804820-4	chr10	118804330	118805330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64073.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.24068026796737	6.82979265846418	6.65330202142251	6.73653555273117	6.60948671112331	6.43779771995817	-0.523945812526865	0.0721962472642312	0.352955660538317
Merged-chr17-56507333-4	chr17	56506838	56507838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5145.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	6.54720699620364	6.49278002225233	6.29323949616963	6.24262741120005	5.77212900396213	5.70400006651395	-0.874735501455055	0.00584302981863573	0.0684480958959654
Merged-chr11-70697532-2	chr11	70697032	70698032	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252485, intron 1 of 7)	B2_Mm1t|SINE|B2	2623.0	NM_001252482	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	2.68480557705774	2.67492023866984	2.92578055483253	2.72727568528258	2.56620150649712	2.76235295140439	-0.416624395104108	0.578250640820548	0.87240568986712
Merged-chr8-84249717-4	chr8	84249216	84250216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007571)	promoter-TSS (NM_001007571)	45.0	NM_001007571	101966.0	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	7.94976982497737	8.02577732942484	7.57014127811331	7.60214194414494	7.84225626425805	7.41417078071128	-0.331590857164182	0.197755073763075	0.585863946830987
Merged-chr8-124756867-3	chr8	124756362	124757362	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5053.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	3.12599292867253	2.89311358331714	2.89232922960444	2.66634416770146	2.78154038515362	2.57344706670993	-1.53753760348459	0.0514731929260301	0.289253828391241
Merged-chr15-74931809-4	chr15	74931310	74932310	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23241.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.201849243117	6.17158825038577	6.47473004865885	7.26706712135421	7.43988049820042	7.25954934943619	1.63841669161526	1.95646036700555e-10	2.43338048158143e-08
Merged-chr6-31222636-2	chr6	31222136	31223136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	B3|SINE|B2	2285.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	3.47560475566827	3.33466101419933	3.55661661871286	3.14590825346259	3.28695071148626	3.47112658922561	-0.590717768525637	0.337490092964275	0.727414835127997
Merged-chr18-9556046-4	chr18	9555551	9556551	+	938.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63418.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	6.12483584237403	6.48145192180448	6.03653064019457	6.36323415605942	6.30640211395832	5.95055201611992	-0.0168113620405654	0.957320893941058	0.989964080281727
Merged-chr3-95674961-4	chr3	95674457	95675457	+	945.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	12960.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	7.88637517255354	7.90298874530799	8.00359226362148	8.12771877110259	8.7397591284045	8.15897628776381	0.636997920896072	0.0135498819146729	0.124007611460676
Merged-chr6-134120418-4	chr6	134119920	134120920	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	84720.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.50495261512039	6.25855410515253	6.12349029690952	6.71388944879156	6.75120258984236	6.41753550570731	0.532258480570962	0.0644883652511063	0.331036297278656
Merged-chr16-23286857-2	chr16	23286357	23287357	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-3613.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.17174838016713	7.23323561020414	7.23728426835251	6.98434927461578	7.13788775771454	6.79509544590743	-0.33628015029127	0.174006229718707	0.553210993472106
Merged-chr3-95311700-2	chr3	95311200	95312200	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3490.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	3.77965024180627	3.50071088775056	3.606899050115	3.55145521137611	3.40404172250746	3.6243280813272	-0.403648701471885	0.481937574741728	0.82522727772513
Merged-chr11-53785658-3	chr11	53785145	53786145	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033332, exon 4 of 4)	non-coding (NR_033332, exon 4 of 4)	15172.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.14236251527802	3.95484537542868	4.48333491131115	4.96047020961566	4.94155596227257	4.86294531384097	1.82258484769058	5.59290758148567e-05	0.00173194884272519
Merged-chr4-62208530-4	chr4	62208029	62209029	+	916.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290353)	promoter-TSS (NM_001290353)	17.0	NM_001290351	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	5.70524365150169	5.86257282968121	5.48748183572415	5.28064243103021	5.13848975572651	5.19732049787209	-0.965886666775671	0.0047832009687439	0.0593393186261321
Merged-chr13-103848525-2	chr13	103848025	103849025	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 15 of 26)	intron (NM_001005868, intron 15 of 26)	72061.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	3.62746315773368	3.74139030505024	3.64775696640219	3.82821502665247	3.50954078963458	3.43710627150753	-0.238233526149477	0.678349606811628	0.913379518157547
Merged-chr4-109476263-2	chr4	109475763	109476763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013876, exon 1 of 3)	5' UTR (NM_013876, exon 1 of 3)	242.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	7.77078897229771	7.62585573728367	7.29967637120256	7.90422023450894	7.44721185962333	7.35704403590816	0.0137269154920143	0.960251387927657	0.990357400804791
Merged-chr3-28081236-4	chr3	28080747	28081747	+	884.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 15 of 25)	intron (NM_008875, intron 15 of 25)	97076.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.19025586782649	3.41904383508938	3.33544957897057	3.26482548002225	3.33930576102736	3.23485818319227	-0.141762298751947	0.818445204707724	0.956974672137491
Merged-chr19-46500969-2	chr19	46500469	46501469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-679.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.66166270884986	6.62420217490239	6.82100447175844	7.06474948142463	7.03747961065464	6.96468771051449	0.505803447932233	0.0402403435499964	0.249837226242956
Merged-chr7-25396155-4	chr7	25395695	25396695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010719)	promoter-TSS (NM_010719)	-208.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	6.31939991252708	6.45196111859581	6.5874595573781	6.44035968510032	6.5500640579438	6.4379365443462	0.0492840996070692	0.854839095429454	0.966038421653227
Merged-chr11-93956765-2	chr11	93956265	93957265	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008705)	promoter-TSS (NM_008705)	-509.0	NM_008705	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	5.93758521578328	6.06419425298959	6.19223961270878	6.02404320489975	5.99504458145976	5.99432613389077	-0.099179790090168	0.733280426559945	0.932039456283818
Merged-chr3-31425593-4	chr3	31425101	31426101	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-115282.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	4.72793598767865	4.996022905284	5.00979099117412	4.74790707031245	4.58066380368909	4.44609966950872	-0.720325839998301	0.0831557937258367	0.381505377849687
Merged-chr9-103230904-2	chr9	103230410	103231410	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-624.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	6.69159538668087	6.7601181946315	6.83545559838249	6.58413479460346	6.42145824073221	6.54725605475777	-0.389221523634291	0.130605668180031	0.483040111917681
Merged-chr8-72321956-1	chr8	72321456	72322456	+	1000.0	f1_c57bl6.idr	TTS (NM_008452)	TTS (NM_008452)	2894.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.10708169142222	6.97807953822891	6.64155109697324	7.10772869355694	7.1179336490475	7.50151342795272	0.477138747213141	0.0851384563344709	0.386252608791229
Merged-chr5-122820964-4	chr5	122820462	122821462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 1 of 16)	CpG	380.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	6.61170018780419	6.66940897898296	6.55706394411264	6.56632584709561	6.7754942304433	6.89489323264245	0.208835027106802	0.425620381554123	0.793193856506818
Merged-chr12-100065754-2	chr12	100065254	100066254	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-46577.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	2.83629970810188	2.97592836651067	3.36774223329883	3.25907142224607	2.88827627992514	3.43803678933569	0.571272302406267	0.436295909578085	0.799472869647494
Merged-chr15-98871505-7	chr15	98871020	98872020	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-315.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	7.41806733007648	7.58534546005625	7.78949094908293	7.63688452955171	7.43681957658171	7.88497932898166	0.0834946099171773	0.741310297906576	0.934802565252866
Merged-chr5-99267535-4	chr5	99267019	99268019	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14592.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.86830105677854	5.55245927583157	5.3753966737225	6.00311639685246	6.46674376029227	6.23992474570755	1.09662706911268	0.00123911408287064	0.02130252161312
Merged-chr11-61930324-4	chr11	61929825	61930825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-68.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	8.72287912326331	9.09435116493902	8.65900211903136	8.68902522936495	9.20293767951513	8.62781813358914	0.0408149111691667	0.875674484458518	0.971093966611904
Merged-chr11-46462183-4	chr11	46461709	46462709	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	7278.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	6.06630727679306	6.31839569506903	6.07221782738108	5.8856884015474	5.59581876475442	6.02224277866993	-0.572363180133974	0.0685333681778287	0.342445172781615
Merged-chr3-139099488-4	chr3	139099007	139100007	+	808.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24306.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.03968229903632	3.04945133488603	3.12210569860654	2.97746719985458	2.90234751299393	3.50832466275117	0.349715429632232	0.620009732344365	0.890023686663772
Merged-chr11-86485948-2	chr11	86485448	86486448	+	915.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 1 of 8)	intron (NM_029788, intron 1 of 8)	1291.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	4.55902274574717	4.28734959143757	4.40100025556899	4.25712995772867	4.53507221010312	4.13982800031579	-0.223929822138393	0.634208476065683	0.896306748317281
Merged-chr15-100102323-4	chr15	100101823	100102823	+	618.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	-52073.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.09529703996591	3.88567746029013	3.87724737167319	4.15525030490917	4.02834494802232	4.04857320170509	0.345745623015833	0.485623972515428	0.827508375896939
Merged-chr11-70656557-3	chr11	70656072	70657072	+	851.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-604.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	6.70020099391236	6.58860506224096	6.94831599950487	6.73306032785646	6.99292896169448	6.80878779239499	0.170736906318451	0.522026752189163	0.847415076595963
Merged-chr3-32396301-3	chr3	32395791	32396791	+	973.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30626.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	7.17299279626273	7.48924819801495	7.36134380327868	7.29929259262676	7.61149319240941	7.38594121375249	0.14270818834446	0.564684991580982	0.866552552710737
Merged-chr8-70172391-4	chr8	70171877	70172877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293797)	promoter-TSS (NM_001293797)	-31.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	5.18898666068088	5.01114336105382	4.70953525155653	5.25071320283059	5.02117113820723	5.19083557615955	0.327835504224349	0.401966028475408	0.777825572781104
Merged-chr15-83442651-4	chr15	83442169	83443169	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	5211.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	4.15894535720957	3.99004101376469	4.33475077306899	3.77291427418633	3.85358736545407	4.36065232889522	-0.434666235829198	0.416836280521122	0.787693011303642
Merged-chr9-119937592-4	chr9	119937089	119938089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028976)	promoter-TSS (NM_028976)	-17.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	6.1571960088599	6.56950967152833	6.56430486855003	6.37968455667785	6.34758795742827	6.19036247836957	-0.209419218372606	0.473852892887508	0.821131043651886
Merged-chr12-69229602-1	chr12	69229102	69230102	+	561.0	f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-1412.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	2.51296592521072	2.44125706835361	2.65071942236555	2.47055567193215	2.39613785110152	2.34051730694237	-0.799427659354798	0.327419509665145	1
Merged-chr3-21808330-3	chr3	21807828	21808828	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-268324.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.45571374625469	5.39231370961909	4.94117031244281	5.02793192415816	5.09801279396847	5.11873656103171	-0.439323572164162	0.245191097174885	0.642381314494918
Merged-chr11-69012516-4	chr11	69012000	69013000	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34C_MM|LTR|ERVK	-3411.0	NM_001281465	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	5.44005722239979	5.62364244095244	5.4958715241059	5.99895590317637	6.04806193271514	5.90876846013631	0.84208523208404	0.00649791542855515	0.0740452680059185
Merged-chr11-68867338-4	chr11	68866839	68867839	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14208.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	5.61202083637461	5.23834548191128	5.26993632190822	5.24522118023201	4.75702573784653	5.10014166007437	-0.707019802345736	0.0704469920066751	0.347816608965254
Merged-chr17-26571106-4	chr17	26570616	26571616	+	964.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	9604.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.59493763332715	6.70496872033803	6.12936046875348	6.25977433307395	5.89380630638511	5.72405109230767	-0.873883165081859	0.00849578728441365	0.0898867447397482
Merged-chr1-156003324-1	chr1	156002824	156003824	+	619.0	f1_balb.idr	Intergenic	RMER1B|Other|Other	-30069.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	4.75345331469866	4.88207150872012	5.45882273897167	5.66616950096034	5.61979672697162	5.62854268362396	1.16311316764924	0.00273969806861379	0.039285356999916
Merged-chr17-26462772-4	chr17	26462285	26463285	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.92166461756087	3.90019612233487	4.48859740733046	3.85847069335034	4.0529080174644	4.28167494741154	-0.146579424193709	0.786561729929291	0.948530822116986
Merged-chr17-10532152-2	chr17	10531652	10532652	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	75936.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	1.99303208106107	2.05040773992362	2.20274276724358	2.21230728458984	2.11426730856036	2.40517975268168	1.20105720368461	0.189283176426557	1
Merged-chr15-25631552-2	chr15	25631052	25632052	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9002.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.7961094029671	4.69922326227118	4.89831323642925	4.80069718943292	4.94629548690108	4.92732665104823	0.225188307880699	0.561224630148865	0.865407801976397
Merged-chr11-87422581-4	chr11	87422074	87423074	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-5017.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	8.10866739256894	8.44553642816548	7.79384881085929	8.18399986278781	8.63656985291841	7.33375486692376	0.0261042567818398	0.963964881529113	0.991245333081322
Merged-chr5-121711674-6	chr5	121711149	121712149	+	995.4815060000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	40.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	7.90867498759504	7.39587498306273	7.407947994426	8.13702618867893	7.57491954449365	7.48682509558633	0.247659504182329	0.403880195220039	0.779072312775153
Merged-chr17-24471208-2	chr17	24470708	24471708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025954, intron 1 of 1)	CpG	735.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	5.25767939737427	5.45145512230031	5.31370667074477	5.27811235554099	4.78534870891586	5.28446591822038	-0.448326716349	0.242022913004845	0.639104507431288
Merged-chr2-132112478-4	chr2	132111962	132112962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	32646.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.94140378308769	5.43329233256857	5.75696048232887	5.98238673501875	5.5799952969523	5.6023871324628	0.0162093382989662	0.963257393493986	0.991082197093192
Merged-chr13-81129040-3	chr13	81128559	81129559	+	679.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	L1MA6|LINE|L1	164985.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.65260964217731	4.08626602806689	3.94544633217261	3.84174064652573	3.66156831939998	3.81639984489366	-0.43408591356384	0.424891072150307	0.792848465017231
Merged-chr16-91386142-1	chr16	91385642	91386642	+	687.0	f0_balb.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	13359.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.02229665498209	6.75382123476208	7.06022063219405	6.89428098023036	6.8252745829021	7.20172505766196	0.0420925763422817	0.874532988913845	0.970754540400126
Merged-chr1-61146278-4	chr1	61145793	61146793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168379.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	4.21866042631935	4.11609331496145	3.96914372741006	4.35057796867244	4.22100221146131	3.98754777539539	0.250408735236157	0.609351894065261	0.88516178840073
Merged-chr15-57693199-4	chr15	57692712	57693712	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	5.49659789698665	4.98198354006638	5.0777209659801	5.11418321440315	4.72243613942573	4.80359658902018	-0.678561458054292	0.0992220580492168	0.420003298020281
Merged-chr9-101097838-2	chr9	101097338	101098338	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	23076.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	3.69481834875045	3.47282900713394	3.75053596018603	3.7965847650386	4.07934307329831	3.82015644441102	0.912740012632267	0.0971324518581526	0.415537123609931
Merged-chr10-25128620-4	chr10	25128105	25129105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	71565.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.08437545290773	5.35948384406267	5.13978646183554	4.95687497190836	4.93314400833954	5.03239227353355	-0.493234236266246	0.181110897731476	0.563386969506079
Merged-chr6-84026318-4	chr6	84025779	84026779	+	833.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	6893.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	5.08153850728488	5.30346022175565	5.13655687361743	5.15914897621275	4.91747755499345	4.87408731242017	-0.397430906280573	0.288757916696907	0.686124851873233
Merged-chr13-46930957-1	chr13	46930457	46931457	+	548.0	f0_c57.idr	Intergenic	Intergenic	-1239.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	5.18137885363418	5.05948677695978	5.06295109868782	5.44363491632711	5.45013610192259	4.93848935836576	0.42217744560351	0.264773979696355	0.662666328517541
Merged-chr10-8912408-4	chr10	8911896	8912896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26326.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.67549348147804	6.31120630187594	6.69326668146306	6.6798313455654	6.76970819017693	6.76728401408576	0.275110239546883	0.312103506630703	0.706941842377231
Merged-chr11-89025722-4	chr11	89025215	89026215	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26312.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.61243151818806	6.80033121982725	7.03803338983935	6.81550894975196	6.85596876272419	7.07090255314111	0.144418602049922	0.589559434295227	0.876892891421814
Merged-chr19-43670766-4	chr19	43670241	43671241	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	4140.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	4.62901681569083	4.91969999682523	5.02522283951411	5.04985608222959	5.46602588246356	5.66290376597988	1.14050997255948	0.00462145131860477	0.0579910481395168
Merged-chr19-6276092-4	chr19	6275581	6276581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-815.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	8.26424421037879	8.02132972323999	7.77228028032827	7.93427863428501	8.13347317223387	7.77519912071735	-0.113206813712141	0.648835588224712	0.901963404198945
Merged-chr1-144245065-4	chr1	144244560	144245560	+	932.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015811, exon 5 of 5)	3' UTR (NM_015811, exon 5 of 5)	4044.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.82621501667882	5.8502690520359	5.32815289922892	5.07982497996037	4.91964197855038	5.5703289786004	-0.950747425456156	0.0160827302926675	0.139353516837683
Merged-chr6-124996768-4	chr6	124996277	124997277	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175696)	promoter-TSS (NM_175696)	57.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	4.59244136643942	4.62201432995781	4.98657105208197	4.3151044049326	3.95077884278145	3.99269152711068	-1.67760283708298	0.00058949224614007	0.0119810627300496
Merged-chr18-54989271-4	chr18	54988779	54989779	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	901.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.41812891840344	5.54176926072072	5.41889266619306	5.05228952004154	5.26492762068968	5.19904024021299	-0.565874223462491	0.102184468722221	0.42621511220806
Merged-chr10-77968375-2	chr10	77967875	77968875	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	1497.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	5.74352673589667	5.86255285706314	6.00295056714075	6.39011177124045	6.5482086382704	6.59809940095712	1.09111009358759	0.000130240459324313	0.00354499448461152
Merged-chr2-60076952-3	chr2	60076454	60077454	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	48786.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	4.14728367612736	4.02414957387351	3.71584130721258	3.81404342505039	3.56878373414078	3.49418629148428	-1.12315243121989	0.0489013264063302	0.280939154432528
Merged-chr11-55116141-4	chr11	55115626	55116626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18141.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	5.51215066429613	4.81844274822629	5.11073421620586	5.10999025993055	5.17643647492153	5.1754144773823	-0.0623700833477313	0.876993461341877	0.971475057279973
Merged-chr10-120219497-2	chr10	120218997	120219997	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 3 of 6)	B2_Mm1a|SINE|B2	-7563.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	5.8827580533879	6.22683953718931	6.04807266451336	6.17972278254526	6.35730216428226	5.81069726376968	0.148676269648557	0.643940206148886	0.900006327027186
Merged-chr1-173429782-4	chr1	173429234	173430234	+	889.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	9130.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.68935655327738	5.37983148975221	5.46099000788726	5.99930856281468	6.31852003901738	6.02839631067026	1.09085892928248	0.000740213582204452	0.0142705495245755
Merged-chr2-145786163-1	chr2	145785663	145786663	+	614.0	f0_balb.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	47.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	2.98603617845062	3.3271181729179	3.18710904987128	3.12193263274039	3.0242681762013	3.021474070692	-0.521845684253599	0.435244796027503	0.798935749708325
Merged-chr5-125341872-4	chr5	125341304	125342304	+	801.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205082)	promoter-TSS (NM_001205082)	-710.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.30509347108918	5.54122646695701	5.63043120031344	5.33621254563706	5.71164805404544	5.55716607112879	0.108124286614289	0.754806634704839	0.939123558849015
Merged-chr6-37430642-3	chr6	37430142	37431142	+	710.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	L2|LINE|L2	11506.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	5.28280955108997	5.14563951583675	4.79622667695208	4.71805638822889	5.03292971023937	4.97880550673189	-0.38846481390126	0.334057708571559	0.724748007849347
Merged-chr6-113668887-4	chr6	113668401	113669401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-28149.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	7.6595854442983	7.31505606035309	7.26745275809149	7.53912650190601	7.71185748839247	7.14841627675172	0.0975413501393616	0.720948766021	0.928324696220711
Merged-chr8-82402822-4	chr8	82402316	82403316	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-230.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	7.14246163961869	7.5453219647155	7.54860502904982	7.57191220827489	7.91179164971853	7.76677873614354	0.489792410743883	0.053648592573733	0.296947598260604
Merged-chr7-84163775-4	chr7	84163267	84164267	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	2.78264412994981	2.94386879479669	2.84649654036122	3.15795165939816	2.82634571818587	3.42890752959773	1.33925040129357	0.0694437657674164	0.344832910929395
Merged-chr3-103279120-4	chr3	103278644	103279644	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053170)	promoter-TSS (NM_053170)	-149.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	6.54730853021056	6.76325545071572	6.70503219305903	6.65086712617661	6.7263027249875	6.68412705496335	0.0228323383377996	0.929044880264611	0.983986741644278
Merged-chr6-97287476-2	chr6	97286976	97287976	+	934.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346637, exon 23 of 23)	3' UTR (NM_001346637, exon 23 of 23)	-34696.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.73359800413406	2.69553164278927	2.88238351376212	2.94290911368704	2.79682962086707	3.23520774790082	1.12312697664578	0.124776008047412	0.472526946914666
Merged-chr9-45221760-4	chr9	45221268	45222268	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-17693.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	5.28814872939216	5.26142625520826	5.3305410079556	4.80445907116477	5.19870028757367	5.03479637505304	-0.536646867353406	0.149782758162212	0.516263772882702
Merged-chr2-145858625-1	chr2	145858125	145859125	+	558.0	f0_balb.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44616.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.49876527886734	4.09726910349148	4.4919835285148	4.15409759473722	3.89263340649582	4.39748307005391	-0.592653993791543	0.240844294456226	0.637851764445026
Merged-chr3-108840278-1	chr3	108839778	108840778	+	1000.0	f0_c57.idr	intron (NM_011504, intron 1 of 18)	CpG	224.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.83636182467347	6.83238519451632	6.86917426002786	7.01237323506296	6.95443577966591	6.96960809860848	0.206154005574838	0.390390565502931	0.76958978415218
Merged-chr19-46486151-2	chr19	46485651	46486651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-15497.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.06866148078441	4.86888212620042	5.55366514686527	4.877544159983	5.06661852234879	5.06809229795113	-0.367807322417632	0.369883508522313	0.754352114878
Merged-chr2-159557710-4	chr2	159557219	159558219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-389622.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	3.03681162075278	3.32093810843737	3.10173511309595	3.36207746992568	3.28649672960667	3.23531432092676	0.548969255692251	0.393957856309651	0.772025390139564
Merged-chr10-22302547-4	chr10	22302062	22303062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-4158.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	8.11108331631105	7.81301158262189	8.14155939964698	7.70761435362702	7.66536698119637	7.58034594651727	-0.534370071253981	0.0195274808145314	0.158846673537543
Merged-chr7-66108309-6	chr7	66107904	66108904	+	807.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1111.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	3.67660210686318	3.80828014930047	3.98448168902984	3.80057594245189	3.8729095994179	3.81020647538075	0.0276554275334201	0.958010403229847	0.990000537228272
Merged-chr9-57650003-1	chr9	57649503	57650503	+	831.0	f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	B2_Mm2|SINE|B2	3628.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.1698950711997	4.92370318717501	5.39935988045622	5.23612312629583	5.38062934096841	5.25120283661094	0.261356036534196	0.479018058168439	0.823983372763153
Merged-chr1-9891853-1	chr1	9891353	9892353	+	875.5	f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	(TG)n|Simple_repeat|Simple_repeat	-16785.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	3.95890651207747	3.90828527611196	4.36695901192946	3.89382908964012	3.97666052805045	4.00094891306256	-0.37063143226875	0.471967244210863	0.820417342888691
Merged-chr5-121453978-4	chr5	121453456	121454456	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029912, intron 1 of 9)	RMER10A|LTR|ERVL	1247.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	4.89682181087001	4.60192549208423	4.67547604015895	4.78421572191972	4.58354065871608	4.81891251476072	-0.0193832224893992	0.962509543035989	0.990863128124742
Merged-chr2-126932035-1	chr2	126931535	126932535	+	576.0	f0_balb.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	1200.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	5.68470974958561	5.76517949424749	5.54589556095295	6.17334576364636	6.50140525479054	5.83958419671699	0.940649688529928	0.0048940266174848	0.0603378453811147
Merged-chr8-74994034-4	chr8	74993543	74994543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178017, intron 1 of 10)	CpG	393.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	6.99512867083827	6.93822027553273	6.7793359607133	7.05066839723973	6.86239333347623	6.83778985585256	0.0129838764137963	0.958744343376004	0.99015359851262
Merged-chr3-104999393-2	chr3	104998893	104999893	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-37684.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	2.93748988213849	2.88464099431024	2.91165995256534	2.62871317972679	2.71738586328153	2.98370551470894	-0.669505414016791	0.36151949671001	0.747413912465046
Merged-chr16-91542020-2	chr16	91541520	91542520	+	829.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5074.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	3.25838407890269	3.29316102873117	3.41214952148723	3.41689598611524	3.44979091134475	3.53601102477579	0.571328614560356	0.333282884476787	0.724200304273483
Merged-chr9-32474479-2	chr9	32473979	32474979	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	L2|LINE|L2	66973.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.14396608366735	5.90389435530859	6.52769071895813	5.94253340887466	6.14853742629849	6.32986391303952	-0.102549638495981	0.753375223433956	0.938549578325581
Merged-chr15-80253740-1	chr15	80253240	80254240	+	634.0	f1_c57bl6.idr	TTS (NM_178719)	TTS (NM_178719)	-1444.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	4.02101847669947	4.20050223874888	4.30572144741495	4.20674288694554	4.43767255685264	4.53658403134019	0.597906097734932	0.200759896062588	0.590068153711614
Merged-chr13-103921553-4	chr13	103921076	103922076	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-990.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	6.65060220078475	6.56798527565241	6.65945124758438	6.56231179760404	6.30719794713261	6.4052963375508	-0.319165164995721	0.230274249180062	0.626162780047656
Merged-chr3-51494721-1	chr3	51494221	51495221	+	669.0	f0_balb.idr	3' UTR (NM_016858, exon 2 of 2)	3' UTR (NM_016858, exon 2 of 2)	10755.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	4.0763588835597	3.67609746171543	4.29215258815872	4.40134339581691	3.93845782412689	3.71881991144347	0.0502530910637513	0.931743465071217	0.984929477721491
Merged-chr5-108660312-1	chr5	108659812	108660812	+	567.0	f0_c57.idr	promoter-TSS (NM_172997)	promoter-TSS (NM_172997)	-19.0	NM_008325	15932.0	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding	5.17133299986621	5.26987617685855	4.91112838431473	4.9894531492539	4.7646452955104	5.2182390162705	-0.305714886350987	0.437768817409135	0.800216778536452
Merged-chr7-46987111-3	chr7	46986593	46987593	+	918.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10461.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	5.912365197802	5.8280664170864	6.09089709304901	6.70409216971975	6.76327747996713	6.05975698495705	1.05480642088507	0.00118447965839756	0.0205672336009901
Merged-chr4-115838405-4	chr4	115837899	115838899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-799.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	7.50622684287174	7.66521560956838	7.41103797411335	7.53505505726105	7.84612506295457	7.61025970900131	0.202687466064753	0.393749232779783	0.771931441253922
Merged-chr12-16894079-4	chr12	16893576	16894576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-902.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	8.80763321350212	8.96635083086613	8.58823671890284	8.54943269008007	8.85838838278536	8.57547588546376	-0.176833227410449	0.434872966079238	0.798660466628143
Merged-chr15-58746349-4	chr15	58745856	58746856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77071.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.49171253022677	7.30019555193977	7.19613933138854	7.65080215494727	7.7728009003767	7.25377078044581	0.362656673259829	0.162582968440409	0.536046425406726
Merged-chr14-13997979-3	chr14	13997467	13998467	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-14524.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	3.69511191567392	3.78141195377506	3.58836048827688	4.10403994419175	4.0693414930051	3.88245171441287	1.03818148561913	0.0494982081403954	0.282877474652325
Merged-chr17-81599348-3	chr17	81598846	81599846	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	139041.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.0146139553165	4.39910739815115	4.17502135017895	4.13723602739377	4.38756215796424	4.24359107906176	0.1488402489207	0.75797683884466	0.940006510270311
Merged-chr19-41982123-4	chr19	41981643	41982643	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	CpG	380.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	7.49115720078208	7.68148731794174	7.59114305948024	7.81933865830737	7.78061070040987	7.72122891477066	0.267311777810661	0.223749927760771	0.618510481017847
Merged-chr5-123137806-4	chr5	123137310	123138310	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4383.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	6.87551961115027	6.7014396285601	6.87920549437302	6.96469933304738	7.19232886256623	7.02020936601602	0.384993231221545	0.123579247225631	0.470544707581506
Merged-chr6-135228515-4	chr6	135227993	135228993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028982, exon 10 of 13)	exon (NM_028982, exon 10 of 13)	19391.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	5.01514541511063	4.33261283457694	4.37235932017339	4.89467616704859	4.88785595709436	5.01086179080403	0.689426600275093	0.138936609734739	0.497943722067999
Merged-chr2-71505066-4	chr2	71504567	71505567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-24378.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	4.41121009711686	4.41271308936081	4.55777738053468	4.28673474836692	4.30234884873584	4.18915068231539	-0.504187083994774	0.257911154301167	0.655403269239891
Merged-chr11-17158311-2	chr11	17157811	17158811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-987.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	4.74375499756122	4.73213832349292	4.51541309492494	4.33213495857741	4.64792795509317	4.25775584697869	-0.573148594665809	0.20391556643303	0.594155098661906
Merged-chr1-171503500-4	chr1	171503003	171504003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	25.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	8.22175819536853	8.48919221449871	7.99926057920799	8.32126552432194	8.55634143068217	8.31049132941603	0.20291479751023	0.393905956624765	0.772010263598721
Merged-chr3-88620885-8	chr3	88620370	88621370	+	856.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-236.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	7.20910046219836	6.89336049830999	7.19309317394618	7.02449326091968	6.98392495848028	7.07956368950239	-0.114715844288614	0.645910659762908	0.900777348480444
Merged-chr2-92059128-2	chr2	92058628	92059628	+	711.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-34958.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	4.19085708600911	4.0488466954309	3.89288683116412	4.04593340709225	4.0243536667709	4.01452285033341	-0.0836155286326775	0.865400991052883	0.968641478520565
Merged-chr1-179517172-4	chr1	179516686	179517686	+	922.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	855.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	5.18129882218116	5.36910161697034	5.48326471351193	5.22151632540698	5.5272993118156	4.90749124712779	-0.167147258004787	0.667437232974353	0.908729013673458
Merged-chr15-81856273-4	chr15	81855775	81856775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	CpG	2051.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	6.11074029560272	6.06680299759478	5.88067993278689	6.0003837789143	6.23969257517476	6.19319037647276	0.204022626853855	0.487414331180794	0.828445729506224
Merged-chr2-26964376-4	chr2	26963863	26964863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207234)	promoter-TSS (NM_207234)	23.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	8.26625236501849	8.39735531450444	8.11919794866608	8.31427805952484	8.43190773396578	8.1470040418972	0.0528331318897935	0.810410949904032	0.955045521890034
Merged-chr1-86393781-2	chr1	86393281	86394281	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4420.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	5.55418342541561	5.72084903802939	5.53048390586608	5.23409265630509	5.7116223829916	5.75298640771324	-0.0398450815828071	0.909354442453568	0.97943692683942
Merged-chr6-97320623-2	chr6	97320032	97321032	+	980.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	ID_B1|SINE|B4	-67752.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.00078438860941	3.15068883772464	3.11351141091708	3.10545587936015	2.87163059386705	3.29641352116638	0.0250662286833445	0.970642370415247	0.99351865396095
Merged-chr1-97673639-3	chr1	97673145	97674145	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11627.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.9711587135681	3.98375144989478	3.80033192139503	3.68835694626748	3.68509402596929	3.48129235597069	-0.991366727197379	0.0721873670914283	0.352932983191937
Merged-chr10-79997314-4	chr10	79996815	79997815	+	811.148804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013850)	promoter-TSS (NM_013850)	-293.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	4.24362497368746	4.20145079759414	4.36904948747014	4.18642413068634	4.11891530726889	4.39384668499524	-0.106714534013476	0.817769633970271	0.956835450074313
Merged-chr12-102458108-1	chr12	102457608	102458608	+	929.0	f1_c57bl6.idr	Intergenic	Intergenic	-11026.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	2.99868500705358	3.13331116724161	3.15384588043697	2.94989078807577	2.77974028677856	2.99420791602347	-0.903686989114628	0.189658519724059	0.575646702603018
Merged-chr11-118148776-9	chr11	118148342	118149342	+	966.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19623.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	7.41738471175959	7.56158541329809	7.48322732862959	6.88090265635952	6.97463771779366	7.14446132461971	-0.732861507505073	0.00201597584255958	0.0311562626128711
Merged-chr1-177491201-4	chr1	177490687	177491687	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45366.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	3.56497872552054	3.00151613147275	3.25290919840686	3.67872265900838	3.7473657652021	3.77142526762004	1.5874477310218	0.0181999426607089	0.152015742713538
Merged-chr10-39171294-4	chr10	39170791	39171791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7497.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	4.42590169277103	4.55604704454571	4.37264200053664	4.33354692272739	4.31703259910282	4.30479499153032	-0.362714469699892	0.409392623081394	0.782737623652496
Merged-chr14-74948629-2	chr14	74948129	74949129	+	789.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	-752.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.21972422327371	5.13825039974572	5.20950078786544	5.18440135455036	5.43327718151784	5.06696741293216	0.127846620468152	0.72408845122941	0.92918571470947
Merged-chr4-151859407-3	chr4	151858894	151859894	+	911.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2374.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.36084962409989	4.54335009455298	4.73581616661022	4.4104861871944	4.15438545616189	4.27414250869543	-0.69044407959338	0.130224261735259	0.48248257376114
Merged-chr7-80833925-1	chr7	80833425	80834425	+	721.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-28183.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	4.79656427084018	4.71417334094793	4.74767034376754	4.71119313571894	4.53069843423505	5.18135574239226	0.158722781047167	0.714333200437425	0.925872500926792
Merged-chr16-20549036-2	chr16	20548536	20549536	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030670)	promoter-TSS (NR_030670)	433.0	NM_013852	27406.0	Mm.27135	NM_013852	ENSMUSG00000003234	Abcf3	AI326318|AU016058|BB119416	ATP-binding cassette, sub-family F (GCN20), member 3	protein-coding	6.69298873618435	6.66546609237358	6.57248202508099	6.69500836626053	7.01426830346055	6.66598970418344	0.257496255347286	0.334384814330203	0.724916623845021
Merged-chr15-59744154-2	chr15	59743654	59744654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	50805.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.27444703671163	6.95584333074373	6.95520981900108	6.78394804584343	7.13375484213096	6.85346554671473	-0.204200203123242	0.446609461317855	0.806071482179202
Merged-chr10-81015064-4	chr10	81014564	81015564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010319)	promoter-TSS (NM_010319)	-139.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	3.35386496709981	3.08565278347522	3.32202435184196	3.10661132326082	3.02394349001799	2.98345809672123	-0.948939981023804	0.15319203781516	0.522003484275517
Merged-chr10-57778112-2	chr10	57777612	57778612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.17281129227215	5.19234661956085	5.10747672141078	4.98190987626591	4.85261903726679	5.20401990991785	-0.322832766769141	0.384365883285636	0.765501008851491
Merged-chr19-34726479-1	chr19	34725979	34726979	+	593.0	f0_balb.idr	intron (NM_172838, intron 1 of 6)	L1MB3|LINE|L1	20632.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	3.52589396490479	3.79195787940811	3.75785525780647	3.43578991108486	3.73528800689714	3.62092049158641	-0.300937212666339	0.59876192630878	0.880808927175713
Merged-chr5-17858093-3	chr5	17857609	17858609	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-8317.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	5.36988659249486	5.52026872870777	5.25719087475767	5.06887537348531	5.2659781858868	5.28890262100537	-0.367609678891009	0.296284924261619	0.693022144754045
Merged-chr5-143629900-3	chr5	143629393	143630393	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	7446.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	4.81503699458091	4.77014370942314	4.62181795127054	4.24934016848802	4.32041448938525	4.68794736586634	-0.788340529909495	0.0724262348340256	0.353484205073927
Merged-chr2-27756202-3	chr2	27755677	27756677	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	45594.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.87394050633342	4.16259214403176	4.77436018715021	3.93882861344418	3.72168233069664	4.45937006551527	-0.662614204895835	0.26957936058576	0.666720943871714
Merged-chr9-83536755-4	chr9	83536230	83537230	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11608.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.56341465733535	6.60375765752151	6.86380553876856	6.59589757843657	6.56193973190076	6.66965864093662	-0.108729508085461	0.680156630115116	0.914139397449033
Merged-chr10-21634753-2	chr10	21634253	21635253	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	41608.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	2.73329703608945	2.55881887114206	2.60423158936362	3.01938624444043	2.91532070622735	2.87457326818769	1.61373890301206	0.0332034855111795	0.22225047240079
Merged-chr11-79305835-4	chr11	79305319	79306319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34073.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	7.64395415439511	7.45207027740883	7.34981745653194	7.43641313572448	7.559323794213	7.43969480144675	-0.0150190656685444	0.948603964428741	0.988151190239158
Merged-chr10-54073712-2	chr10	54073212	54074212	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	2084.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	2.62900776573773	2.45997143336072	2.67445883683308	2.53739337526586	2.22417239392425	2.43114514438239	-1.1672304602071	0.172968178761369	1
Merged-chr4-154936036-2	chr4	154935536	154936536	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7959.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.43740080624645	7.54993385888633	7.28391775553593	7.24948060107654	7.30226238204813	7.1071280763042	-0.306812177246092	0.19670793328157	0.584670419247381
Merged-chr8-71948869-3	chr8	71948404	71949404	+	656.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2162.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	5.0160860578012	5.17317944014769	5.31260059542642	5.12170372799301	5.09817944739215	5.3157552842165	0.0185889994455972	0.959183713756258	0.990174309444982
Merged-chr8-119779528-4	chr8	119779032	119780032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	3.18367732777723	3.13384632813036	3.38645354606637	3.45159800600926	3.2491658969632	3.34764732675891	0.475470752167203	0.44381692384883	0.803884349333946
Merged-chr19-38818462-1	chr19	38817962	38818962	+	638.0	f1_c57bl6.idr	intron (NM_021315, intron 1 of 20)	intron (NM_021315, intron 1 of 20)	775.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	4.50248886110424	4.26381166722564	4.35358355343942	4.37528085121598	4.61799729641191	4.02499254335286	-0.00348461333369249	0.994323887716541	0.998918571480046
Merged-chr1-131279859-2	chr1	131279359	131280359	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019777)	promoter-TSS (NM_019777)	-296.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.80581849197639	3.82934049686366	3.99400846730697	4.27267049339358	4.44208058856357	4.7931600617006	1.79636945722531	0.000332352722123569	0.00758486157500218
Merged-chr6-66897379-3	chr6	66896883	66897883	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177558, intron 1 of 4)	intron (NM_001177558, intron 1 of 4)	492.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	4.50594450233191	4.57346571038478	4.62584552350367	4.56128625892858	4.17589128688156	4.69137951396176	-0.211334543376203	0.6401703588287	0.898358943863097
Merged-chr12-83859128-2	chr12	83858628	83859628	+	937.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	ORR1A2-int|LTR|ERVL-MaLR	-16770.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	4.75747778717734	4.56842038756858	4.8055958629204	5.09231986159835	4.91610449623376	5.11580616671047	0.736212975784572	0.0595318717925101	0.315843040992919
Merged-chr10-117900860-2	chr10	117900357	117901357	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24602.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.56142049258184	6.16866598549148	6.61058741741884	6.70298395739681	6.56130223006277	6.28321849387351	0.126455972690975	0.671890457728338	0.910694246658612
Merged-chr13-60479112-2	chr13	60478612	60479612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122835.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.39967418434313	3.58062727326556	3.59612733779097	4.15562457709397	4.33774592980766	4.18088977933418	2.30239738577766	2.84116067465799e-05	0.000982573970976484
Merged-chr2-14073198-1	chr2	14072698	14073698	+	577.0	f0_balb.idr	promoter-TSS (NM_001356337)	promoter-TSS (NM_001356337)	736.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	5.70109351215026	6.30775007472795	6.08225667727059	5.92673212246556	6.19048821761656	5.88601658286296	-0.0698713203198818	0.834473539137359	0.961319929864283
Merged-chr7-128741204-2	chr7	128740704	128741704	+	860.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-775.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	3.25894429067021	3.1486552011869	3.19888731047295	3.36024416054875	3.31941509946277	3.32879091535595	0.542910858629643	0.375511808714677	0.758788065572183
Merged-chr7-46830164-2	chr7	46829664	46830664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15640.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	5.52415694975762	5.76242979642168	5.48017113512384	5.76878512517008	5.70370331922461	5.71317016742907	0.230570566873997	0.472346693094247	0.820550293768681
Merged-chr17-78939194-4	chr17	78938694	78939694	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028611, intron 3 of 9)	intron (NM_028611, intron 3 of 9)	2059.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	2.99084412437861	3.08056786647866	3.33636508786882	3.20904362588562	3.12703306622775	3.60744450816837	0.762031034139775	0.256995631603749	0.654227880881256
Merged-chr2-180589390-4	chr2	180588995	180589995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031373)	promoter-TSS (NM_031373)	88.0	NM_031373	72075.0	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	7.43175041100526	7.77403487459167	7.43798005318595	7.825575660768	7.63567686412807	7.55630805785655	0.168897107579572	0.488733671861057	0.829423271678195
Merged-chr19-24987539-4	chr19	24987039	24988039	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-11990.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.8002441473827	5.16983526593814	5.15093750550127	5.07076500299517	4.90075824520771	4.86360612031737	-0.212412527041199	0.586047692003773	0.875253192308036
Merged-chr2-101767381-4	chr2	101766867	101767867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30340.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.47580748888372	6.38697164670023	6.64613042101687	6.5984727793162	6.88236285611364	6.91134933508214	0.482141587226362	0.0734592430545234	0.356127802046978
Merged-chr7-80094308-2	chr7	80093808	80094808	+	772.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_173011)	TTS (NM_173011)	-19051.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.06045865675608	2.91907090923639	3.37321579929049	3.1415457943033	3.07466938251504	2.9307502591368	-0.308842418740811	0.656597265374167	0.904693205515276
Merged-chr3-95818193-3	chr3	95817688	95818688	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081293, intron 1 of 10)	intron (NM_001081293, intron 1 of 10)	765.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	6.78291403419893	6.8804118185515	7.29993501224561	7.07036243792477	7.16845311956121	7.14107043280076	0.198399055442199	0.456687316597098	0.811810511641165
Merged-chr14-122013807-4	chr14	122013303	122014303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20871.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	3.69294146104563	3.47902144147306	3.60918713253121	3.46372188798774	3.19840025622212	3.62763982200961	-0.600760613719529	0.321390230464435	0.714837665357421
Merged-chr5-16047535-4	chr5	16047017	16048017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	112826.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	3.71289210052444	4.00863857303877	4.01902633339409	4.06950328513763	4.53145391268051	4.08898079020846	0.974152937126444	0.0627932708296841	0.32588426864569
Merged-chr17-69204785-4	chr17	69204268	69205268	+	899.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	Lx8b|LINE|L1	45412.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.93160417801946	5.00462641524527	5.21056700105415	4.82776622608342	5.0067687445262	4.66045563380535	-0.423341258034673	0.286465663257423	0.683725296730741
Merged-chr1-131549207-3	chr1	131548701	131549701	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21298.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	4.86656494044073	5.08849922743796	4.97373919994652	5.37790315367269	5.45484107354374	5.21555968248324	0.779477379169738	0.0312011039519384	0.213923982995459
Merged-chr15-96697115-4	chr15	96696623	96697623	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	2605.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.40213159674864	4.01352728487008	4.224354970657	5.06002200804748	4.74805808401347	4.24547222889955	1.26071950521659	0.0121104436489229	0.115058894169854
Merged-chr2-152781262-3	chr2	152780758	152781758	+	782.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149254, exon 2 of 2)	non-coding (NR_149254, exon 2 of 2)	27085.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	2.69875336538653	2.75369885185905	2.80279580078409	2.82218204375042	2.64324874210005	2.99287832655382	0.358896415009313	0.624729899405441	0.892200723368576
Merged-chr11-118135429-4	chr11	118134940	118135940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6221.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.75262114723432	3.73540890106577	3.55248488974191	3.42033933543936	3.30541861001463	3.27311579871057	-1.32162949007234	0.0264922458610884	0.193458212890128
Merged-chr17-29000631-4	chr17	29000131	29001131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	7364.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	5.83413239033112	5.97346446711025	6.24324751510834	6.03920660237865	6.16383942749012	6.37690269929888	0.302594577940622	0.323461340585993	0.71668986599242
Merged-chr19-8952010-2	chr19	8951510	8952510	+	568.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011842, exon 18 of 18)	3' UTR (NM_011842, exon 18 of 18)	-1822.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	3.07276212907024	3.12106865336621	3.60615617965079	3.0336525917517	2.99838290888013	3.62798258469603	-0.139092720557336	0.848159613292584	0.964318271116593
Merged-chr10-96503467-3	chr10	96502961	96503961	+	608.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113540.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.19554224363819	3.00466484514245	3.0704683063192	3.06421209480642	2.86520393589819	3.0236276287509	-0.506438535265298	0.453211082296383	0.809701014116181
Merged-chr16-94628148-1	chr16	94627648	94628648	+	547.0	f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	16729.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.69634753814168	3.87001136325267	3.43753391320335	3.66229414352323	3.98733193325542	3.74108034247106	0.396353550713161	0.495585305870965	0.83254120142987
Merged-chr4-128839331-4	chr4	128838838	128839838	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33226.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	6.65507077962741	6.82946281818997	6.70129706019266	6.39364099296677	6.25818774204044	6.71369993851761	-0.440907058387594	0.114321534020026	0.451579153051663
Merged-chr5-96948979-3	chr5	96948477	96949477	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27705.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.23121846905603	5.22122836485711	4.9040952099262	4.8648169934523	4.8741738606493	4.39283427010611	-0.852843226994968	0.0458301358060637	0.270494675851252
Merged-chr10-40310396-4	chr10	40309890	40310890	+	957.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8202.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	3.0041224200031	2.95221026457891	2.82601443610894	2.96785842737006	2.81068684564464	3.24979897694186	0.384706049069155	0.590247108082979	0.877133359617561
Merged-chr19-41777012-3	chr19	41776507	41777507	+	899.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	25077.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	4.73105186865976	4.88706132421293	5.20019817753794	6.08297255221386	6.51038370396507	6.17996857178347	2.54000771374251	7.98338507438249e-13	1.55200194036456e-10
Merged-chr4-95206861-3	chr4	95206374	95207374	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154652.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.5720135596999	2.49625652053683	2.7376950317936	2.22806564884892	2.38818332596052	2.57113141349236	-1.25068009432988	0.147675172284695	1
Merged-chr8-8462007-4	chr8	8461520	8462520	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198753.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.15143183028638	3.17897453443264	2.98917236630248	3.16238098132862	3.20045684384499	3.29907588761642	0.446732595658652	0.489152107250004	0.829459847891797
Merged-chr13-37775934-1	chr13	37775434	37776434	+	673.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-50104.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.4941352398174	3.45723505396216	3.36536443401094	3.40126608232718	3.72115648267658	3.43775706828213	0.343078331583945	0.564725491819205	0.866552552710737
Merged-chr2-45104025-2	chr2	45103525	45104525	+	918.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	(GA)n|Simple_repeat|Simple_repeat	6252.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.10881707647799	5.70846456018317	6.16188924584884	6.25852691919541	5.86388203822032	5.95871991213827	0.0609155137495579	0.851993861229035	0.96531854415899
Merged-chr19-5571995-4	chr19	5571472	5572472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033448)	TTS (NM_001033448)	3948.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	7.42411817982385	7.29026064092529	7.47933097501033	7.58359602280263	7.74557694342206	7.42157329016761	0.294299583314674	0.211616447683485	0.603971371984887
Merged-chr7-145309071-4	chr7	145308549	145309549	+	812.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145379, exon 3 of 3)	3' UTR (NM_145379, exon 3 of 3)	-5786.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.17701811511413	4.53050198911975	4.38517134078832	4.12974021154525	3.9813856597591	4.08906325949935	-0.856681190176332	0.0731538920922096	0.35546537334785
Merged-chr6-52159272-2	chr6	52158772	52159772	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	748.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	5.50437813731654	5.66485005847497	5.56234191221589	6.5840187015775	6.44954707918484	6.38033614732319	1.54226294929094	1.69299972484487e-07	1.13240451048949e-05
Merged-chr13-99939473-4	chr13	99938970	99939970	+	680.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-38787.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	2.24016396062391	2.21204993878633	2.50299880613014	2.47292225155207	2.2120042883181	2.51520642992567	0.532083589495636	0.538449241966057	1
Merged-chr10-19580940-3	chr10	19580427	19581427	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11022.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.96714733564623	4.67049178174892	4.90367062209572	5.16245425921067	5.03520909955313	5.52039761664611	0.834162819786265	0.0358180448919286	0.232574496480101
Merged-chr11-94600895-2	chr11	94600395	94601395	+	854.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	891.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	5.22823721834267	5.34072958728631	5.12386006594433	5.04540132479636	4.89669641281901	5.04980132896899	-0.521538251790655	0.15139985836569	0.518785957867327
Merged-chr7-101359760-1	chr7	101359260	101360260	+	771.0	f1_balb.idr	intron (NM_001040111, intron 1 of 33)	ID4|SINE|ID	11691.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.63498805900836	3.44740691289633	3.49464072926034	3.53285951240231	3.44099402856017	3.45421214581312	-0.196095296572884	0.733048231459112	0.931985446585439
Merged-chr8-40926197-4	chr8	40925683	40926683	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026840)	promoter-TSS (NM_026840)	-50.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	3.18202672167436	3.32581367689692	3.36569620327203	3.55832148043786	3.71517781642079	3.75484284047224	1.45759671293691	0.0141131923706917	0.127492184429543
Merged-chr15-7925643-2	chr15	7925143	7926143	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	110093.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.37958312565825	3.61356474453026	3.79678528963223	3.42191933739816	3.52884760206423	3.67076168217307	-0.21355722014746	0.715813440586772	0.92647595514209
Merged-chr15-53216596-3	chr15	53216107	53217107	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	129576.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.41553679303877	3.09205625549802	3.41195664646805	3.09936305017404	3.05784307860555	3.08780093111079	-0.987330255714231	0.133268401848321	0.48836948380917
Merged-chr7-118106779-2	chr7	118106279	118107279	+	877.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	9368.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	3.07883259516224	3.11096455533826	3.18333265861868	3.11850014883508	3.06929927579263	3.08077553206032	-0.146912101860333	0.819273538267531	0.957250636594552
Merged-chr12-86836043-3	chr12	86835503	86836503	+	831.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	48811.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.43338464398381	5.68846723404067	5.37418875101515	5.72996029643016	5.75338682963167	5.47003435688084	0.282646984004592	0.401501808773595	0.777579391314845
Merged-chr3-88337528-3	chr3	88337073	88338073	+	914.6555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178246, intron 1 of 21)	intron (NM_178246, intron 1 of 21)	1313.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.35260489663453	4.98970125591166	5.34612911764874	5.91066651010089	5.87559661244479	5.67293653567569	1.12830867237855	0.000987029145773054	0.0178300997463221
Merged-chr6-114893547-2	chr6	114893047	114894047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	28274.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.36153013743382	7.54792870568087	7.16270721662438	7.2689971397047	7.22044397638241	6.69870129337905	-0.408666013652807	0.144892583107707	0.507780063817804
Merged-chr2-21117344-3	chr2	21116840	21117840	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88025.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.44293627551356	3.38063894190492	3.52820609816587	3.26017719551974	3.28336127659291	3.5462622674344	-0.332312214254486	0.580175438397951	0.87276422265422
Merged-chr7-127256789-2	chr7	127256289	127257289	+	786.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023203)	TTS (NM_023203)	3878.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	4.11378111669335	3.79786080428083	4.04884809439706	3.96454323272844	3.79809679386534	3.76645278559876	-0.445863432151609	0.393271682518959	0.771515439837752
Merged-chr5-62847634-2	chr5	62847126	62848126	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33803.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	6.74610250391992	6.97599915133426	6.67271331490501	6.51653658445006	6.58592290304735	7.05624200738127	-0.120806422408763	0.676674457383849	0.912549881054299
Merged-chr19-5910370-2	chr19	5909870	5910870	+	798.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011262, intron 1 of 10)	intron (NM_011262, intron 1 of 10)	2501.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	2.26185438876538	1.97811196573927	2.13504666076636	2.21245499060942	2.05510585070801	2.34212379349365	0.528811224725532	0.567824069584423	1
Merged-chr12-34783824-4	chr12	34783330	34784330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	133265.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.93384826445519	5.64709483192559	5.94227926090284	6.09376649961081	5.78602766662028	5.72928310267045	0.0707750552922397	0.826230062253541	0.959130347937145
Merged-chr4-117127208-4	chr4	117126763	117127763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175030, intron 2 of 3)	intron (NM_175030, intron 2 of 3)	450.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	7.61096867300554	7.66745050563462	7.3991213813524	7.29006902026211	7.49355499212662	7.3341658623711	-0.279775933563464	0.234215865903003	0.630414497316978
Merged-chr6-21977317-2	chr6	21976817	21977817	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8593.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	3.26827710230699	3.53117549489807	3.67313795996612	3.79378546597765	3.7874071917194	3.93805440451628	1.18201120474241	0.0402318744755652	0.249803284184973
Merged-chr10-115318725-2	chr10	115318225	115319225	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3134.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	3.16355638762896	3.56577576158514	3.36385797010118	3.38530444665136	3.30508790547911	3.64590549183402	0.260902544593579	0.678863802566836	0.913553914280182
Merged-chr4-146498027-2	chr4	146497527	146498527	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3973.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.11904608372918	2.9325872579688	3.1852543478798	3.09485579341273	3.4364840463578	3.76709900327853	1.52314448038116	0.0270982841667493	0.196051997995555
Merged-chr7-110768614-4	chr7	110768175	110769175	+	809.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276301, intron 1 of 14)	CpG	469.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	6.37007607317354	6.44914489754419	6.6707140436232	6.30849447848878	6.21077414287307	6.41233792512039	-0.308552899271732	0.266093100098948	0.663886553006065
Merged-chr10-119050493-4	chr10	119049987	119050987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152787)	promoter-TSS (NR_152787)	12.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.02115501685303	4.83273413512785	4.55377491125142	4.59035620917851	4.29358443008093	4.70418792303941	-0.700069532674659	0.113044620492814	0.449191427529329
Merged-chr16-5234154-1	chr16	5233654	5234654	+	1000.0	f0_balb.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	533.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	7.36773429009586	7.63983915431335	7.22682278315525	7.43628713941651	7.34154121353593	6.93041448753553	-0.246076731908094	0.363684647097624	0.749305999992549
Merged-chr9-106314856-1	chr9	106314356	106315356	+	778.0	f0_balb.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	33795.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.27213119936468	4.11036541933354	4.43322079297506	3.81811401268402	3.85651238092109	3.93554744387718	-1.21687585851482	0.0152485147758461	0.134179189664615
Merged-chr17-71126967-2	chr17	71126467	71127467	+	773.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010867)	TTS (NM_010867)	-56565.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.2646771245286	6.30022778534486	6.12081835583929	5.96782491116146	6.19306204840414	6.04677038955299	-0.266737131849382	0.353432297505069	0.740735826287885
Merged-chr3-27209892-4	chr3	27209408	27210408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	26904.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.36281508599199	8.45355953483742	8.01374436785156	8.23934414449826	8.66085874710957	8.00742421290885	0.0628510031313387	0.81461161297294	0.956369939298364
Merged-chr14-61405970-2	chr14	61405470	61406470	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	L1MD|LINE|L1	33977.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	3.66211541785321	3.96795343214709	4.15409475253938	3.94864548214852	4.01558268787228	3.89400996693935	0.062371951787127	0.906127454647555	0.978582776260923
Merged-chr13-64161781-4	chr13	64161287	64162287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019986)	promoter-TSS (NM_019986)	-79.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	5.1808228395825	5.29929621795708	5.288500244159	5.62204169890464	5.47596478982596	5.61471414601685	0.606873952739189	0.0692805126937908	0.344435917102623
Merged-chr7-100465678-6	chr7	100465171	100466171	+	926.7037349999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-7320.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.9594298003389	6.04085908313783	5.89834925465408	5.4928384193685	5.41840242596367	5.47763963370601	-0.935927027690255	0.00254286021761742	0.0372064803322724
Merged-chr16-91728738-4	chr16	91728220	91729220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	82.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	7.28520665151969	7.21640370263069	7.22882474181181	7.24746508129326	7.34033997720513	7.05897837443422	-0.0227664083651976	0.923670156343701	0.982727549942016
Merged-chr13-49301771-2	chr13	49301271	49302271	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	7437.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	3.76725857096819	3.62402366530259	3.7962270924042	3.95459916665835	3.61505189375035	3.81537197665155	0.229541258422492	0.672353554344905	0.910773962627634
Merged-chr2-23005836-4	chr2	23005320	23006320	+	831.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34421.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	6.27074108669745	6.26536469588476	6.18200714962845	6.42401572524451	6.50778886346318	6.36429047888239	0.321413005298755	0.233874211077902	0.630121355137759
Merged-chr5-24423711-4	chr5	24423196	24424196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007668)	promoter-TSS (NM_007668)	-166.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	7.05342411119428	7.5430001200925	7.22906447406237	7.32857688442716	7.63277563795922	7.18855636988622	0.16406736188077	0.549915373443086	0.86050509437616
Merged-chr7-81863371-4	chr7	81862851	81863851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	664.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.72140139271268	6.70516864824894	6.76947221598629	6.57810085993048	6.50051838811393	6.64000299492496	-0.255601221998568	0.313567605663166	0.708121563861612
Merged-chr19-4048070-3	chr19	4047586	4048586	+	831.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5865.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	2.00679020446266	2.05055639082315	1.91230968064815	2.18191430690987	2.04350288100212	2.26156239346158	1.28886344417785	0.176549275599533	1
Merged-chr2-14237545-1	chr2	14237045	14238045	+	568.0	f0_balb.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	8131.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.3452555289027	4.9622913768617	5.23884150809413	5.48887904208269	5.54198567173001	5.72538518610475	0.770415649333265	0.0297795288168544	0.207877100150405
Merged-chr9-62913697-7	chr9	62913212	62914212	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 6 of 13)	MIRc|SINE|MIR	-51688.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	5.35631189409955	5.36811834485988	5.30190477179023	5.44870130814798	5.39407226011658	5.39671457311982	0.133531890411395	0.688149269904316	0.917193226920892
Merged-chr4-11123772-4	chr4	11123281	11124281	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151526)	promoter-TSS (NR_151526)	-177.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	4.36518972372158	4.44824069463614	4.39589136283284	4.25847335150488	4.31991660218743	4.73511322808009	0.100298749246459	0.826469129146655	0.959132530412348
Merged-chr9-66877575-4	chr9	66877073	66878073	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	42132.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.64106039355191	6.82751664490339	6.10335048173498	5.92661055553221	5.94723823303171	5.80962723482662	-1.12091556563648	0.000513529729180684	0.0107038531326819
Merged-chr4-132630092-2	chr4	132629595	132630595	+	731.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8951.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	5.16767830688323	4.76010488002036	4.91148984011019	4.9575744021648	4.65595828112095	4.74651607661845	-0.376644530471909	0.35699625980384	0.743663606373794
Merged-chr9-20966950-4	chr9	20966455	20967455	+	908.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010333, exon 2 of 2)	3' UTR (NM_010333, exon 2 of 2)	-7067.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	4.87878717955722	5.00797393973709	5.01614277199054	4.84088183319817	4.86460257670564	4.61847371040162	-0.396429921228913	0.311202567806834	0.706465219571547
Merged-chr3-16025247-4	chr3	16024802	16025802	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-18970.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.93194394233915	4.19760923466022	3.52326396392595	3.56514253185761	3.72216276191776	3.65624177139691	-0.87290362429944	0.139538436449719	0.499131433621496
Merged-chr11-69058434-4	chr11	69057830	69058830	+	962.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1445.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	6.10990799179106	6.0196921151645	6.55042987106698	6.15957851452338	6.4738127031564	6.45874644286335	0.227410435547511	0.464638687579869	0.816459397744841
Merged-chr13-44403258-1	chr13	44402758	44403758	+	793.0	f1_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-36469.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.41272789379511	4.79298348161061	4.65774841026643	4.79211071616048	4.89141680489912	4.64240693147039	0.360082599678046	0.392763789804838	0.771320548318037
Merged-chr7-138919744-4	chr7	138919246	138920246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10240.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	4.75713361186214	4.90769583369417	4.94217808995596	4.38949146073139	4.2272532574308	4.28433437457382	-1.40582602821018	0.00103072241153127	0.0184515343665958
Merged-chr2-25273181-2	chr2	25272681	25273681	+	625.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	715.0	NM_175300	99152.0	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	4.20219674411732	4.05619002866236	4.07249155950037	4.22941635027867	4.26775825998017	4.49262661316486	0.586912187754022	0.210351685079399	0.602427996561115
Merged-chr8-35549274-3	chr8	35548769	35549769	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38529.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	2.52736959166061	2.8867375599602	3.25864066198368	2.31267417754521	2.29884054491714	2.46444047597045	-3.9415680676675	0.00034826480655367	0.00787885209997764
Merged-chr2-153791605-4	chr2	153791112	153792112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 5 of 7)	intron (NR_036629, intron 5 of 7)	10733.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	2.86753511780999	2.73412255773008	2.8656191527151	2.58633849187462	2.65361427046943	2.63154591061694	-1.0904618863471	0.147371718153327	1
Merged-chr11-97151648-4	chr11	97151099	97152099	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1887.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	4.80512776793961	4.38916721952212	4.59738317075736	4.66406939002116	3.94648405472524	4.45649991810524	-0.549094778225456	0.277515440572354	0.674707488501667
Merged-chr11-50207757-2	chr11	50207257	50208257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 2 of 7)	intron (NM_001290769, intron 2 of 7)	3063.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	3.34358231457066	3.31183021696613	3.57762850558258	3.34157346479005	3.16865621397371	3.33261367572819	-0.52539635224608	0.393277562648141	0.771515439837752
Merged-chr15-64197992-4	chr15	64197479	64198479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	114694.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.68180734715351	6.75534448086615	6.38959947662404	6.72797732335212	7.19982411163934	6.93428966539632	0.539544283787067	0.0572121301788741	0.308462834699913
Merged-chr3-105836207-3	chr3	105835697	105836697	+	839.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20630.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	3.65187403628271	3.71192469281059	3.59228728767948	3.37470067725425	3.52303799881508	3.49907821084651	-0.671816017381092	0.237804089011164	0.634356560418258
Merged-chr5-3647985-4	chr5	3647469	3648469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026033)	promoter-TSS (NM_026033)	-33.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	5.93446532436328	5.47512504625535	6.19946393817999	6.23881670239966	5.74488945309218	5.68258000886271	0.0363671840722226	0.922323396527172	0.982542868764899
Merged-chr10-122008330-3	chr10	122007891	122008891	+	624.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38924.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.21438307819017	3.4122065656506	3.09032419899263	2.85553567473939	2.88271071556406	2.91429143577045	-1.73919291978969	0.0137717959767803	0.125392393065383
Merged-chr1-92974313-4	chr1	92973784	92974784	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	-1063.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	6.09258272454822	6.27091309986347	6.76088327948392	6.389890600296	6.75084262852351	6.84720470434482	0.449161323746367	0.161147616394872	0.533894917976686
Merged-chr5-121596346-4	chr5	121595841	121596841	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2517.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	7.14592466630034	7.22122029912448	7.24174443795735	6.83095707467076	7.15019377539098	6.67091593404929	-0.436789918732919	0.098342111674611	0.418132367308177
Merged-chr17-63374386-4	chr17	63373898	63374898	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	MTA_Mm|LTR|ERVL-MaLR	-61425.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	3.24777429837528	3.29164204827551	3.41740975753541	3.51362548284835	3.72294277073658	3.64910394638447	1.19550312155362	0.0417933355872976	0.255737848551115
Merged-chr8-111056796-1	chr8	111056296	111057296	+	1000.0	f1_balb.idr	exon (NM_028274, exon 1 of 1)	exon (NM_028274, exon 1 of 1)	457.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	5.64765423063755	5.76743923196085	5.65357586214036	5.53660200783085	4.91127233112411	4.93224930643126	-1.0228227933871	0.00813056231667527	0.0870020356540529
Merged-chr2-68793747-4	chr2	68793256	68794256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67685.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.19882194473282	5.38274442301458	5.42668230974639	5.18310274749209	5.46267408368813	5.65093171920174	0.204704075605844	0.565353317765555	0.866604993545608
Merged-chr2-30178513-4	chr2	30178017	30179017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172660)	promoter-TSS (NM_172660)	-58.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	4.93509427352105	4.81766390965582	5.13724961089671	5.07187356488964	4.88735287229795	4.6452923702352	-0.163113134313012	0.685469513990607	0.916264475254709
Merged-chr3-108132715-4	chr3	108132191	108133191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	13461.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	4.29425138348294	4.35720010349147	4.41881098475931	4.43046186804528	3.96956076077418	4.12386455129138	-0.454993339511994	0.343927393181621	0.732645864957409
Merged-chr4-43460202-1	chr4	43459702	43460702	+	592.0	f0_c57.idr	Intergenic	RMER4B|LTR|ERVK	-5576.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	5.40036522842097	5.19241872606707	5.68073235592717	5.26541363178361	5.20907588880417	5.74170698705069	-0.028147410383476	0.94117386310389	0.986908937621943
Merged-chr17-5566251-4	chr17	5565749	5566749	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	73649.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.30559627239858	4.55014861985018	4.32909561101882	4.05281619734984	4.1200450455007	4.55989847009133	-0.39856285487472	0.410081317790141	0.783116615634315
Merged-chr10-61199765-4	chr10	61199251	61200251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 21 of 21)	intron (NM_001081127, intron 21 of 21)	24489.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	4.37879050905563	4.39050274206509	3.85098028218442	4.36866927092542	4.30809847649191	3.98190623507514	-0.00915502137354794	0.98617127474859	0.997033990984076
Merged-chr15-81730050-4	chr15	81729565	81730565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146174)	promoter-TSS (NM_001146174)	-146.0	NM_001358622	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	4.97299751128806	5.1794989159183	5.1399037315329	5.0530066028459	5.205893674736	4.95806248706344	-0.0277473036174646	0.940283534016889	0.986792088790777
Merged-chr14-50928723-2	chr14	50928223	50929223	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033271, intron 6 of 6)	intron (NM_001033271, intron 6 of 6)	2126.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	3.93919357982526	4.09955616139742	4.73417341064704	4.11104103229463	4.40661930015102	4.51100284585507	0.144216282607554	0.787550051213599	0.94877064431094
Merged-chr4-7154448-4	chr4	7153950	7154950	+	866.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-163727.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	3.38878458640909	3.40374777615489	3.59697714820996	3.23326777185869	3.30461894846261	3.29164086351379	-0.719277112974877	0.234925449833278	0.631024470284135
Merged-chr16-87703843-2	chr16	87703343	87704343	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	4889.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.6248828022757	3.31701851385473	3.58867138977049	3.53340800288504	3.49729160359478	3.75904876143673	0.287232810245441	0.623469743108093	0.891427938597819
Merged-chr19-5638671-2	chr19	5638172	5639172	+	614.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 3 of 11)	exon (NM_009045, exon 3 of 11)	1182.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	5.764502704013	5.71617571811558	5.54979824842564	5.71750807218453	5.87826694133137	6.16377031548973	0.426048218234737	0.188106785079565	0.57352205966475
Merged-chr16-24933457-2	chr16	24932960	24933960	+	919.833374	f0_balb.idr|f0_c57.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126179.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	7.96991604164187	8.02076351683943	7.95395975428212	8.0403408083599	8.22038092071083	7.94035428135231	0.135190784646513	0.532320595769758	0.851971173271146
Merged-chr12-99468215-4	chr12	99467719	99468719	+	826.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18145.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.22231415864201	3.18603830979331	2.85149099788528	3.00939238805397	3.06917607556325	3.11485956604218	-0.173350089564149	0.802314838811527	0.953197339007501
Merged-chr12-3355246-4	chr12	3354710	3355710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-9922.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.34292411653931	6.49925946860289	6.63577535782971	7.05537203143085	7.02567621182908	6.93590823617061	0.811888614044047	0.00151026292963284	0.0248434017041552
Merged-chr11-77439853-2	chr11	77439353	77440353	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	B4|SINE|B4	-24060.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	3.84377953156011	3.77132590286613	4.23680606360228	3.76034158638945	3.56564596947949	4.0943574061744	-0.442558671607743	0.436331163105131	0.799472869647494
Merged-chr10-69217352-4	chr10	69216867	69217867	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	4173.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.78141580279659	5.87300722402461	6.0379226992162	6.13167591456288	6.32229391767425	6.2251438812277	0.581930593075328	0.0462333327654342	0.272025396177786
Merged-chr7-16207238-3	chr7	16206652	16207652	+	996.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14841.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	5.37294302606029	5.39261232881477	5.19366103258783	7.0332207066157	7.17723031115036	6.77249605936623	2.84873446192376	1.23244802933169e-19	7.65295041974862e-17
Merged-chr11-69995068-4	chr11	69994563	69995563	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-703.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	6.71569022959217	6.50354656753954	6.68814019287272	7.12335987139061	7.25026742851742	6.76345229408713	0.673876762116167	0.0130021060817055	0.120907931823738
Merged-chr19-47169159-4	chr19	47168669	47169669	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9651.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.29247262301016	3.18116372371877	3.41480045496596	3.56387287751178	3.68309218343936	3.25173033802631	0.861317849530472	0.167597737914793	0.54359836970508
Merged-chr3-7613799-4	chr3	7613321	7614321	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008371)	promoter-TSS (NM_008371)	-61.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	3.00671995514378	2.60579140298504	2.71671749423933	3.20600527335788	3.19794232478708	3.34109899596204	2.18896114999447	0.00621912163749983	0.0716137106577755
Merged-chr7-143614818-2	chr7	143614302	143615302	+	635.5	f0_balb.idr|f1_balb.idr	intron (NM_175649, intron 5 of 7)	MTC|LTR|ERVL-MaLR	13043.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	4.44759734481163	4.74798469318693	4.89732735756796	4.09277641369511	3.97671234691173	4.57212509415036	-1.22522837517827	0.0132464611275797	0.122264174986539
Merged-chr2-25634422-3	chr2	25633876	25634876	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6402.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	3.79887396992133	3.9539850996491	4.07345221307921	3.97830304294275	3.71767203954388	3.80174761684164	-0.332573479936994	0.524912410636936	0.84884700169621
Merged-chr2-60217813-3	chr2	60217307	60218307	+	954.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	7871.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	3.45915299408004	3.22359234033667	3.13058947577118	3.10666651602943	3.37132250843658	3.26355862013345	-0.113235944344721	0.861558224858101	0.967861544964734
Merged-chr5-105698843-4	chr5	105698391	105699391	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.25766329035592	6.07125664359584	6.14933620555269	5.95146568110845	6.09276629848969	5.91345978570545	-0.286000889209378	0.325730772251277	0.718237388633778
Merged-chr6-114643144-4	chr6	114642648	114643648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028835)	promoter-TSS (NM_028835)	51.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	8.56219183681949	8.93476040233367	8.29051452243884	8.52446039710169	8.93825933977592	8.37114448627967	0.0153227745567056	0.955298075843286	0.989763164889919
Merged-chr4-63404263-2	chr4	63403763	63404763	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045514)	promoter-TSS (NM_001045514)	-818.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.1716988611985	4.49899170741757	4.41491324366988	4.46160520325942	4.43144311834847	4.71834052476535	0.420062111776385	0.35143506255845	0.739299452698803
Merged-chr13-5605606-4	chr13	5605136	5606136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252456.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.18558973697275	6.26789019717035	6.08925486081766	5.67511828570162	6.00082436345536	5.96860315539633	-0.509441752127726	0.0907858488898865	0.400963280766929
Merged-chr2-35496106-4	chr2	35495603	35496603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34654.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	7.85371919773779	7.93485975347543	7.68645794088907	7.4365526054337	7.42380076881871	7.50484256739132	-0.555731106096013	0.0128031026758632	0.119631731325461
Merged-chr2-122571340-1	chr2	122570840	122571840	+	548.0	f1_balb.idr	Intergenic	Intergenic	39937.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.23052588333091	6.24546077985557	6.33484650337121	6.17024940131074	6.25658870661746	5.88683019480234	-0.236282172050539	0.41772132855044	0.788282863629715
Merged-chr5-121123872-2	chr5	121123372	121124372	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67525.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	2.83620044445427	2.72538655675351	2.90346377907805	3.31967812578851	3.27682014483716	3.33302223931687	2.39682723031691	0.000859677956722597	0.0160134505088368
Merged-chr7-19093269-4	chr7	19092756	19093756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126095, exon 15 of 15)	non-coding (NR_126095, exon 15 of 15)	-1288.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	3.94772131389423	3.76275548835026	4.47456940212882	4.35272883865378	4.11593712359708	4.68499227697557	0.834036328113634	0.128139441195381	0.478770840726773
Merged-chr4-44166860-3	chr4	44166363	44167363	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038993, intron 1 of 11)	intron (NM_001038993, intron 1 of 11)	675.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	5.06290969997481	5.12850540621169	5.1679717563368	5.10176150584052	5.17905379630614	5.16614900211347	0.0674185920768048	0.849303553791449	0.964617601505288
Merged-chr5-43180239-1	chr5	43179739	43180739	+	914.0	f0_balb.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-53224.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.91555370026765	5.45749539255572	5.20981286505755	4.95830995606666	4.89845332309986	4.80918690251667	-0.685991354590113	0.0838454666261026	0.383225135238931
Merged-chr16-17451950-4	chr16	17451460	17452460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277231)	promoter-TSS (NM_001277231)	-25.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	6.86220303011584	7.29593176043331	7.15806319996735	7.10338208568031	7.24363606678334	6.71447352058957	-0.102626767703203	0.716916396717193	0.926902065545368
Merged-chr6-32507033-3	chr6	32506522	32507522	+	712.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 2 of 31)	intron (NM_175750, intron 2 of 31)	-4119.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.17753463312638	3.12343499891229	3.33171138053213	3.02894460920248	3.29928370143678	2.99548352239306	-0.364620171500238	0.587316472455067	0.875827611026223
Merged-chr11-76856207-2	chr11	76855707	76856707	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-9199.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	3.34524456382948	3.20324024314846	3.3410850286327	3.21514575418914	2.88110771440118	3.41188669937751	-0.477707353288737	0.482660773015942	0.825747658710697
Merged-chr11-70945467-4	chr11	70944955	70945955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 10 of 16)	intron (NM_001083331, intron 10 of 16)	24518.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	6.0981751883361	6.04059742575431	6.02912307082606	6.17806966270955	6.5135843526397	5.9954010371109	0.346661810744978	0.256682582683676	0.653737977781352
Merged-chr17-50330412-4	chr17	50329910	50330910	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36790.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	3.79064852913154	3.5260143717242	3.4251776939142	3.38991199730375	3.07340542778877	3.26109050218218	-1.37223548244476	0.0318797654332399	0.216507633216538
Merged-chr10-127261917-4	chr10	127261419	127262419	+	824.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039000, intron 1 of 28)	MIRb|SINE|MIR	1444.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	3.88804186740273	4.07657378356604	3.90164110379411	3.8916650699724	3.97580343748089	3.70545812535049	-0.280358523963444	0.591023624556836	0.877325810702804
Merged-chr8-106683115-4	chr8	106682612	106683612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173037)	promoter-TSS (NM_173037)	44.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	5.56266169325921	5.72633359172923	6.02125897972579	6.43837970535418	6.21711872228468	5.89287763985547	0.756635785538329	0.0218928773344325	0.171515162154549
Merged-chr8-116732954-10	chr8	116732364	116733364	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029441, exon 1 of 7)	5' UTR (NM_029441, exon 1 of 7)	127.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	5.31924989170217	4.98423781855219	5.39767409467674	5.83195470973169	4.91942678206045	5.51779885316929	0.456767688010741	0.283629666077852	0.681376161050487
Merged-chr14-61687026-2	chr14	61686526	61687526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4653.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.02865809595063	5.1532987581495	5.39393171251358	5.4494228948636	5.31478374980031	5.27454863698031	0.322268998722469	0.366005000821626	0.751073890410521
Merged-chr8-104596404-2	chr8	104595904	104596904	+	793.599976	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024606, exon 2 of 2)	3' UTR (NM_001024606, exon 2 of 2)	4936.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	3.29385678529347	3.23628968542457	3.20500730590315	3.36757736739472	3.11844195395394	3.44464908510139	0.256384326553628	0.683401886183944	0.915427157113777
Merged-chr14-45085358-4	chr14	45084863	45085863	+	842.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97252.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	3.69410619301425	3.3409553961022	3.65928066779299	3.23736549127082	3.29929547541297	3.82334516063762	-0.352906829372456	0.583983924669665	0.874371294853541
Merged-chr12-105830605-2	chr12	105830105	105831105	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347440, intron 19 of 20)	B1F2|SINE|Alu	45908.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	2.75051848354933	2.79554883375042	2.90477484421842	2.71337399352209	2.50208393099649	2.91906386058819	-0.525492964725479	0.492610984822247	0.831177181177099
Merged-chr19-4301375-2	chr19	4300875	4301875	+	635.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4847.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.34173591745533	5.50329673155594	6.03736600389899	5.78959615505293	5.80861097984046	5.94822112898193	0.362336924080501	0.307465417096273	0.703580177816035
Merged-chr3-108901117-1	chr3	108900617	108901617	+	697.0	f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	10612.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	5.94816867258952	5.9659732319291	6.23198729436625	5.60311085022781	5.86457827396824	5.86306623625101	-0.463550929948894	0.137248741139374	0.495027571456897
Merged-chr8-111525355-4	chr8	111524865	111525865	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3258.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	3.71980162905247	3.6268450906901	3.58411678277865	3.74257306243338	3.56899011298836	3.90874888123721	0.307113654134069	0.57872544468799	0.872437129840066
Merged-chr6-97504946-4	chr6	97504465	97505465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-17145.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.15777190602535	4.1344214549647	4.4199286396537	4.85648151607424	4.72098231905755	4.87559152406384	1.46206810403007	0.00076987132611255	0.0147491371812477
Merged-chr14-30192946-3	chr14	30192425	30193425	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	160561.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	3.69038817855327	3.44698695706651	3.60661211679636	3.42880117128926	3.51360851598753	3.77645714275956	-0.0351533068306582	0.951559462751212	0.988851751924602
Merged-chr1-180973390-2	chr1	180972890	180973890	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 22 of 22)	intron (NM_144794, intron 22 of 22)	30872.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.31671539046813	5.3177105623073	5.69485822565287	5.54580806095709	5.6113248970399	5.75616114983027	0.368627245605986	0.278199879776111	0.675512302918485
Merged-chr16-35984549-2	chr16	35984049	35985049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	B1_Mus1|SINE|Alu	1186.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	6.5835309195645	6.63609437682297	6.29598706097577	6.50068872546309	6.71899414967571	6.29344927324625	0.00898486560933594	0.975208804593667	0.994454548709104
Merged-chr4-43260380-3	chr4	43259892	43260892	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-6767.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.85364867954258	5.6936510160528	5.79238141373285	3.92961311764398	3.85104159942033	4.2145792966438	-4.84670524103992	5.96038253956052e-18	2.88343901367297e-15
Merged-chr19-60945142-1	chr19	60944642	60945642	+	660.0	f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	55393.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	3.56703270529291	3.82527769046421	4.06266912463269	3.67484274158949	3.62938433150993	3.75620226866952	-0.464758923121047	0.404899748106233	0.779791650050306
Merged-chr19-41382864-4	chr19	41382357	41383357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	2213.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.58295186978109	8.70925106737898	8.34919699527527	8.69080004434051	9.01835623946367	8.19973611975542	0.178406772777058	0.514439640048501	0.843107848235413
Merged-chr17-74874681-4	chr17	74874255	74875255	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-130774.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	4.2204721993858	3.8087260569995	3.79068333064132	3.6529489939062	3.72190731140376	4.19192606018767	-0.272398059848081	0.633866203498051	0.89620803487903
Merged-chr17-24193121-2	chr17	24192625	24193625	+	762.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001163851, intron 1 of 8)	intron (NM_001163851, intron 1 of 8)	6832.0	NM_001163852	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	4.01568653492182	3.51875992511025	3.76519650252685	5.30546148604953	5.13404122937864	4.79190294532079	3.70928531216371	0.000409880673697177	0.00895858972865635
Merged-chr7-128379023-4	chr7	128378522	128379522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	MLT1C|LTR|ERVL-MaLR	39150.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	8.07204798518792	8.25234105619818	7.69338326496937	7.70763959779484	8.15480518874177	7.57291215527861	-0.265615730711946	0.340307821990238	0.730009364824144
Merged-chr10-63243747-4	chr10	63243245	63244245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-52.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	7.44658895877674	7.85395987033296	7.73336702619549	7.66438498269557	7.90303523045225	7.78988813086437	0.14727279691228	0.540919429175132	0.856582937501506
Merged-chr1-191732844-2	chr1	191732344	191733344	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	L1MB7|LINE|L1	14449.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	3.12343096439051	3.06875396269392	2.83110436422499	3.114665252291	3.07315448604037	3.09474965419285	0.329495616375415	0.629750909770196	0.894377678440432
Merged-chr7-99105158-1	chr7	99104658	99105658	+	630.0	f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	AT_rich|Low_complexity|Low_complexity	35986.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.38322134001587	3.13936305990651	3.53759735972172	3.63151255856388	3.51412892804913	3.70959988530361	0.968176743338106	0.110227394150575	0.44355436116098
Merged-chr7-110384639-2	chr7	110384139	110385139	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	162936.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.60000054099656	5.0586779986311	5.25623183657012	4.96670621441767	4.88771801067611	5.03623310892717	-0.066086450355369	0.873539725891339	0.9704338252599
Merged-chr17-73928962-2	chr17	73928462	73929462	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	(TTTTTG)n|Simple_repeat|Simple_repeat	21234.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.80001146488611	6.92712446883106	6.41426867957005	6.51867419396433	6.57641840231719	6.0772798166138	-0.508291118132087	0.0991495927563681	0.419827963669629
Merged-chr1-125390783-2	chr1	125390292	125391292	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	44935.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.30797128653866	3.10904335915037	3.46289687686868	3.42640479956042	3.10352232719364	3.13926847629605	-0.262653807881466	0.687720493869046	0.917193226920892
Merged-chr2-91138758-4	chr2	91138275	91139275	+	863.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	20631.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	4.23544432326713	4.394867234831	4.3413797776957	4.32356877786514	4.16879468911404	4.18122199748356	-0.269585091646617	0.55442584484408	0.862808889387787
Merged-chr2-172369742-2	chr2	172369242	172370242	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291185, intron 1 of 8)	ID_B1|SINE|B4	828.0	NM_001291185	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	3.40302514500315	3.20905859022931	3.4041132428178	3.39559113655609	3.17088872274819	3.30817514545424	-0.190876218572759	0.757240931339631	0.939819795914786
Merged-chr8-117322659-2	chr8	117322159	117323159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-26511.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.11717225489896	3.97294716495355	4.1006145699516	4.36128447398109	4.19045611507698	3.96907903177203	0.357447749685145	0.464482532459034	0.816423299200476
Merged-chr17-33557748-3	chr17	33557254	33558254	+	806.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	2047.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.13886609890621	5.10221776445965	5.04752045914072	5.32404863124317	4.78416641122089	5.5857329180105	0.334053997636127	0.419669955097951	0.789150628972688
Merged-chr4-155200986-4	chr4	155200504	155201504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	21531.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	6.64477006932557	6.44857302475622	6.41578424597302	6.43459930890093	6.62009436692072	6.49392401320178	0.0185030015648336	0.945180801669896	0.987875414328125
Merged-chr18-23884669-4	chr18	23884143	23885143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-70045.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	7.95667731306558	7.77270275973945	7.55139454626702	7.75971546396451	8.1338082567148	7.60815511167677	0.123304237481406	0.636509648733326	0.897186184642272
Merged-chr2-156722386-4	chr2	156721873	156722873	+	900.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	1094.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	5.14460023110918	4.90370842601703	5.30633123614308	5.01422943252201	4.74918551353698	5.22011817785018	-0.264212241759528	0.507710295191123	0.839371314171726
Merged-chr4-141678287-2	chr4	141677810	141678810	+	855.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7406.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	3.52914126056005	3.38691823158837	3.67510535875638	3.06706409556459	3.07948235178437	3.33145494794383	-1.53240061743511	0.0174087312002606	0.147284769263984
Merged-chr12-100684714-4	chr12	100684199	100685199	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 1 of 17)	L1MB2|LINE|L1	40421.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	6.24656968791968	6.70463160625452	5.93289610693302	6.17830177735227	6.04380154139585	5.75034464511964	-0.565893689510329	0.102956744494873	0.427849213201288
Merged-chr2-11514436-2	chr2	11513965	11514965	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	-12375.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.88060764179478	3.96384726919376	4.01740090964456	3.9099870773084	3.74674125646023	4.08527961772813	-0.126694005164232	0.804753703502042	0.953651704501661
Merged-chr2-18975440-3	chr2	18974940	18975940	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	22681.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.69877249017465	4.56853881930404	4.56303403669042	4.19472383238563	4.34030351018635	4.54839180468254	-0.634594262723432	0.148234798004206	0.513762236213799
Merged-chr16-30788367-3	chr16	30787884	30788884	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	188661.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.89295329324127	6.78034668185483	7.11233544773197	6.89243394645848	6.63510535087276	7.1099656911315	-0.0701221240875794	0.79881069977618	0.952063885260145
Merged-chr2-170209378-4	chr2	170208879	170209879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66704.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.48962504485461	5.36145528958293	5.37681821636579	6.01377139391441	6.0612133834033	5.19528127818121	0.765801427603541	0.0472636825395206	0.275365018673049
Merged-chr14-73434408-2	chr14	73433908	73434908	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49119.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.27599279652867	6.66716197657713	6.84078991869833	6.77985735477795	6.86765592451326	6.70436318896821	0.285363376149862	0.316407308094517	0.710520302583489
Merged-chr7-114439924-3	chr7	114439417	114440417	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	24663.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	4.30579942365954	4.56155968850681	4.42053652294685	4.39778244607163	4.1820761915011	4.48737526419267	-0.215235472103699	0.634667844093323	0.896354115104213
Merged-chr19-21653070-4	chr19	21652588	21653588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	-221.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	6.89602234111052	6.67477215512561	6.86738202875987	6.92259675977699	6.65054018243571	6.76206501025392	-0.0514414050965049	0.843189226242203	0.96331130255476
Merged-chr5-20951138-7	chr5	20950682	20951682	+	997.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	193.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	7.82824635233664	8.13647910171909	7.84416503142666	8.02230291964309	7.94394338217961	7.91654563414892	0.0194584481319583	0.93104722232174	0.984765710287914
Merged-chr4-107179352-1	chr4	107178852	107179852	+	681.0	f0_balb.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	722.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	6.32356024170081	6.50954122622068	6.44850622946887	6.56296447346041	6.59241581610012	6.56103186453635	0.232078841297541	0.376907534289383	0.759474066768804
Merged-chr5-115119283-4	chr5	115118752	115119752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007383)	promoter-TSS (NM_007383)	94.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	5.25113766849198	5.23649396488724	5.34553604072636	4.92784208831281	4.87623793594103	4.83107639487855	-0.833817723360218	0.0222822622108951	0.1734227363244
Merged-chr1-131199392-4	chr1	131198877	131199877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	808.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	8.67262774959836	8.87033959786584	8.52474372531247	8.57399260682755	8.74249244722887	8.62169841045888	-0.071262933503046	0.738824788488582	0.934103186309056
Merged-chr8-103577363-4	chr8	103576885	103577885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26414.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	5.98429786560674	6.39457006573637	5.92577625645776	6.1710683766929	6.1065961296244	6.17087813629613	0.029665084059625	0.92317372161647	0.982693984177635
Merged-chr13-12412247-4	chr13	12411765	12412765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	16890.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	7.59973725963477	7.63787831068811	7.1772978736552	7.67385177803877	7.79970972404381	7.3221443764983	0.182698189855468	0.494919343183764	0.832153667472614
Merged-chr3-84674905-3	chr3	84674402	84675402	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	U8|snRNA|snRNA	8710.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	2.56363523081845	2.39154979910528	2.48715101255961	2.48780883146556	2.32051400572066	2.68523037484523	0.109809012140713	0.893395833873108	1
Merged-chr5-140766725-2	chr5	140766225	140767225	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	42598.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.05803764856564	6.10840415268977	6.16290458012173	5.49069392841657	5.12951520325729	5.33743490414775	-1.45258139034835	7.76348692028369e-06	0.000321065715538253
Merged-chr7-145029811-4	chr7	145029323	145030323	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89898.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.79189434614009	3.48161512668298	3.90039099374628	3.30147414967966	3.66261280572621	3.40028704873953	-0.907361449214624	0.143369196811758	0.505400107113741
Merged-chr17-87263045-1	chr17	87262545	87263545	+	668.0	f1_balb.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	2902.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	4.08285831741539	3.91303578039534	3.96302642324131	4.37488060736322	4.21798434471003	4.27266350467063	0.846548693760623	0.075983179638223	0.362752218218903
Merged-chr18-80416733-4	chr18	80416236	80417236	+	961.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-52482.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.24670893165569	4.26996074020533	4.23802754524623	3.96156837264791	3.74453426983959	4.26182321334358	-0.746916282579817	0.140349736522893	0.500699117062725
Merged-chr15-38290320-3	chr15	38289827	38290827	+	783.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9573.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.85291224747014	5.87469529509608	6.08350440604921	6.10657391737487	6.29069362273472	6.18608166433128	0.460527271360228	0.113948368174986	0.450859089500984
Merged-chr3-100439292-4	chr3	100438803	100439803	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12898.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.1041908093821	4.04404965027559	3.65539121254267	4.24955365351672	3.96560542473175	4.1518314839628	0.480978688770981	0.367202355084146	0.752113401392775
Merged-chr9-47529818-3	chr9	47529314	47530314	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-356.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.51672014727712	6.24872332091024	6.50074609268727	6.40176474211236	6.53665423210513	6.52519754340137	0.10720132822668	0.694537574101669	0.919210273513843
Merged-chr2-132235337-3	chr2	132234863	132235863	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12425.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	3.74302581386853	3.84209145607394	4.13477049882195	4.10932682237364	3.84459336149318	4.52081035871453	0.778150123082379	0.155943152530887	0.526056832716696
Merged-chr16-38345519-2	chr16	38345019	38346019	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	2.49807997887554	2.71665451497719	2.59617394723085	2.81541052411622	2.99571408741712	3.04074976649745	1.84581255628567	0.0186058508840846	0.154152707394495
Merged-chr11-53889437-2	chr11	53888937	53889937	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	2266.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	4.22536557022777	4.20127868138569	4.14857338170526	4.04375023501229	4.20071041413635	4.30662236082444	-0.0267624124440683	0.954399605978936	0.989574212185713
Merged-chr2-164868151-2	chr2	164867659	164868659	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-10451.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.94265822563887	6.57662974180459	6.9190963787737	6.86683420175331	7.23365341542284	7.05753861584588	0.377673218824706	0.163980517224684	0.53801075971892
Merged-chr16-90301092-4	chr16	90300586	90301586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16583.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.29036318997889	5.16667531324387	4.95877243472711	5.05588553683648	5.19947533743878	5.1318439903896	-0.0461369247696943	0.899880334112678	0.976728292075907
Merged-chr13-98819300-4	chr13	98818794	98819794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3845.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	6.46538037549218	6.63338136324505	6.45145629064529	6.85099058426654	6.98180375548304	6.47323007533848	0.434759196339172	0.122219753786749	0.467699653839579
Merged-chr10-10470333-2	chr10	10469833	10470833	+	742.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1981.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.66196684177945	6.81026739195448	6.6298047577949	7.02681412371584	7.0983579832023	6.95116873644839	0.498874485523983	0.0447598987615872	0.266751300397805
Merged-chr18-53266544-4	chr18	53266042	53267042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	20880.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.12961666902637	8.45613406976451	8.00539519981178	8.16249758503458	8.61412800555171	7.91791979836979	0.0810687221697383	0.768505252010144	0.942871018290895
Merged-chr17-28696288-2	chr17	28695788	28696788	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	3720.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.91475153053621	5.17842875939998	5.25869827619838	5.12724831299282	5.21347327218464	5.4100067950558	0.266614196709274	0.469572309176216	0.818985761338447
Merged-chr2-58157853-2	chr2	58157353	58158353	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2269.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	6.17967781168692	6.73212743426941	6.61221712685553	5.7617734178819	6.27980199496944	6.41949529018494	-0.569604877636918	0.092519021371964	0.405196206659212
Merged-chr3-95135144-4	chr3	95134635	95135635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1047.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	5.02927729585553	5.05454891059064	5.82557553507285	5.69348701167097	5.8518428589465	5.90890457711575	0.891012430309314	0.0241048840924216	0.182602223702284
Merged-chr3-95669880-2	chr3	95669380	95670380	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	11159.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.95819738464774	6.78863305921582	7.35784529101215	7.1427528182362	7.35331347114054	7.20555932972333	0.290088102980231	0.28558044792695	0.683127149952729
Merged-chr3-51249426-2	chr3	51248926	51249926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 2 of 2)	intron (NM_009834, intron 2 of 2)	24979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	2.64468066950431	2.7398826976073	3.17923438625563	2.50169117171865	2.62410434640505	2.92735205196449	-0.903213053196209	0.268556829966166	0.665755301886631
Merged-chr18-62182449-4	chr18	62181956	62182956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2356.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.72840963475995	6.40240776753748	6.53664370992217	6.78265806326894	6.85350946141493	6.729636548768	0.360912267996163	0.17244639081027	0.550991447912638
Merged-chr10-80343782-2	chr10	80343282	80344282	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104340, intron 6 of 11)	intron (NR_104340, intron 6 of 11)	4666.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	2.55709410743546	2.53929045922943	2.68682475271695	2.35182717162319	2.28704790369529	2.24346316039153	-2.00331727360804	0.0236722467822435	1
Merged-chr17-35673801-4	chr17	35673278	35674278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010364)	promoter-TSS (NM_010364)	-35.0	NM_010364	14885.0	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	4.99667342178186	4.98913092375909	5.02436129490974	4.82330304184731	4.89637167239546	4.58036872511765	-0.478744501835034	0.223008192082655	0.617835308211147
Merged-chr6-108658579-4	chr6	108658062	108659062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2067.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	8.98817554713141	9.06866848924023	8.45138245962538	8.36856103832682	8.78458601811997	7.84624548643852	-0.64533232703951	0.0366286794164837	0.235526789102792
Merged-chr7-29155637-4	chr7	29155127	29156127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146023, intron 3 of 7)	CpG	583.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	6.8278057614024	6.9787468650952	7.12263506375169	6.45117742958808	6.34000354585795	6.55805183175493	-0.837738446658813	0.00145121782666297	0.0241419328860546
Merged-chr16-55757708-3	chr16	55757219	55758219	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	64419.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.85439780070352	6.85692380452534	6.67255310339416	6.62806443617234	6.87009321521683	6.66510301005374	-0.11032252993107	0.670468662425217	0.910029595108128
Merged-chr3-59205713-4	chr3	59205226	59206226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.94990188586441	7.98185527612873	7.63141588233252	7.68652864470086	7.99211085407218	7.57987931221534	-0.1385160410573	0.577365962608834	0.872117086580778
Merged-chr7-28907420-4	chr7	28906910	28907910	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 8 of 20)	intron (NM_021895, intron 8 of 20)	25754.0	NM_001110807	60594.0	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	4.34572792865532	4.3106196603658	3.74033002218441	3.74015987253177	3.5348957499993	3.75715254888122	-1.54843388343139	0.00622152117807917	0.0716314285575774
Merged-chr17-34285192-1	chr17	34284692	34285692	+	834.0	f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	2579.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.96721228424355	2.93089630313101	3.09164962974399	3.69215361967554	3.76443290257795	3.35548769481162	2.77413360709133	6.86935529221261e-05	0.00205532295992243
Merged-chr11-44378099-4	chr11	44377596	44378596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21967.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.57384533556948	6.53754607518332	6.13821704170838	6.66908401342903	6.41992368709884	6.30871479423598	0.0575191370318772	0.84569180380145	0.963850894494439
Merged-chr18-3383130-4	chr18	3382616	3383616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029402)	promoter-TSS (NM_029402)	-109.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	7.11554083872249	7.41491390772714	7.44931074244338	7.29864301902272	7.1762047505497	7.09743817427829	-0.203563571392964	0.409891504671044	0.783037226945994
Merged-chr17-26507431-4	chr17	26506945	26507945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013642, intron 2 of 3)	intron (NM_013642, intron 2 of 3)	1027.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.21344816423024	8.21518675619455	7.96093378734265	7.89345289397952	8.14114351168366	7.71180517226432	-0.287939548134435	0.226075703230454	0.621101697573202
Merged-chr12-73687573-4	chr12	73687100	73688100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102804.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.56502334702069	7.87779523581515	7.25633019686089	7.52453962633918	8.00273093877776	7.26389706021207	0.0671168149515646	0.825350517976074	0.958821343666982
Merged-chr3-146813060-4	chr3	146812565	146813565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011100)	promoter-TSS (NM_011100)	-119.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	8.04563630641659	8.17885202786725	7.85851550027091	8.04942587431954	7.9646737515177	7.71344774776775	-0.166736512251895	0.473492781463118	0.82090428702971
Merged-chr18-60732541-3	chr18	60732086	60733086	+	982.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	555.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.51820672308678	6.49285654897143	6.48060640251909	6.72041799363352	6.86891491505015	6.38704957521974	0.301816475475891	0.276513895481627	0.673935800094764
Merged-chr11-68417990-4	chr11	68417487	68418487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-14138.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.20157128928965	3.90819740175422	3.90827325537335	3.57900834862267	3.77534755884434	3.71716502761987	-1.02078332799761	0.0590321362043322	0.314545721650235
Merged-chr10-94991804-1	chr10	94991304	94992304	+	593.0	f0_balb.idr	Intergenic	Intergenic	-47226.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	2.79901559608149	3.0291732179797	2.87112331581317	2.7982597463573	2.76422827528654	2.94381521888694	-0.360103442224034	0.612928630006002	0.886969289870611
Merged-chr7-113193228-4	chr7	113192712	113193712	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14253.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	5.47827730549359	5.3734627112563	5.30749422017618	5.25282753477373	5.06074314376247	5.8644302554042	0.0696876689065835	0.860864644662397	0.967644143315439
Merged-chr19-10277405-4	chr19	10276769	10277769	+	935.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	27608.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	6.33428018624701	6.29991233871344	5.75489181274771	5.29088424999135	5.90876860976272	5.31752876158047	-1.07097636991755	0.00559685450766873	0.066371867562564
Merged-chr1-182909817-4	chr1	182909313	182910313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-44975.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.01830741936111	4.78891847108953	4.50965874025257	4.43934474609658	4.60897485531251	4.62101486700058	-0.565809038795599	0.190061156212496	0.576216758852106
Merged-chr5-135461942-2	chr5	135461442	135462442	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	PB1D11|SINE|Alu	-67396.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	4.96577291994694	4.94008170695722	5.18929321366329	5.01098322401678	4.94539467568123	4.98703066773691	-0.101976658042531	0.78465287448731	0.947710697182936
Merged-chr18-37926165-7	chr18	37925667	37926667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	9309.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	5.99525730709635	6.24066826592801	6.23986887114285	6.27748034337223	6.33713344443259	6.29987440049612	0.244087257272649	0.385831810195843	0.766674506964127
Merged-chr10-8005585-2	chr10	8005085	8006085	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49462.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.76554244260662	3.22568901330134	3.90939291747008	3.30698363030614	3.16491041645101	3.49334168726031	-1.24649454244697	0.0594369069777173	0.315651401314903
Merged-chr16-15986327-4	chr16	15985791	15986791	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	AT_rich|Low_complexity|Low_complexity	99005.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.15871280304609	5.4308445755751	5.19584529769747	5.56597021017061	5.3088401785411	5.53590560070699	0.382754199672067	0.276903037405954	0.674252251447813
Merged-chr12-34142967-4	chr12	34142456	34143456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 24 of 27)	intron (NM_001271386, intron 24 of 27)	185285.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	4.06829829959179	4.06597556250147	4.34354859866446	4.20119649087954	4.44668218528457	4.53134980944897	0.652356116600118	0.164954688565779	0.539617077326343
Merged-chr3-88608252-2	chr3	88607752	88608752	+	860.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7955.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.53477042063726	5.60282211496039	5.40530652071613	5.68538712121913	5.41610462313848	5.43809673883121	-0.0084741485736926	0.979750006662638	0.995332945386782
Merged-chr12-100107049-2	chr12	100106549	100107549	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5282.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.3060358110619	4.01472060235282	3.88906262545415	4.23827633431898	4.45605439991067	4.21644445152929	0.613179749636199	0.217239920518378	0.610996579127954
Merged-chr14-121929540-4	chr14	121929047	121930047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13773.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	7.42014955944846	7.60308888103257	7.02423784828176	7.45222678037181	7.61400857954304	7.59070816464428	0.25155795393495	0.333554228032422	0.724468518545896
Merged-chr12-111455309-1	chr12	111454809	111455809	+	563.0	f0_c57.idr	TTS (NM_009396)	TTS (NM_009396)	12648.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.82117826554487	4.68941985912973	4.95664955364481	4.91220003488622	4.73661886424514	4.8420552801378	0.0219521955737571	0.955579408581964	0.989763164889919
Merged-chr1-75219295-4	chr1	75218802	75219802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-8.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	7.32690922309979	7.63592577369094	6.79347805239434	6.5519710723818	6.42853625795396	6.24272410249563	-1.37268569853533	1.09922831033741e-05	0.000434304792243852
Merged-chr10-96622522-3	chr10	96622007	96623007	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	5506.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.60718869560319	3.54221343295652	3.77430487339485	3.5302751664845	3.57315919668729	3.58898693618936	-0.261764861453743	0.638694851497378	0.897696343024507
Merged-chr8-120763424-4	chr8	120762909	120763909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24770.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.29090947294662	4.18566890094187	4.36997356194422	3.97346530180929	4.11996157144926	4.2212193677456	-0.485322978470154	0.303627831638722	0.700140609166312
Merged-chr18-4908921-4	chr18	4908423	4909423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96437.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.19932060602505	5.56095768553844	5.70093622408128	5.00340273070932	4.71294622701302	5.18375777326184	-1.08263104790745	0.00585194708965285	0.0685236157382261
Merged-chr13-59001404-3	chr13	59000899	59001899	+	956.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	193702.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.56406549904166	4.87061353082579	4.89108934151671	5.30592119814913	5.51954294653249	5.3891695673262	1.32967169295428	0.000429740240044836	0.00932164387217172
Merged-chr10-94523838-2	chr10	94523338	94524338	+	599.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	8981.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.12617400588186	3.12196545616652	3.39852421538891	2.84018806428414	2.77827494945352	3.03345928840408	-1.59748561677456	0.0246294279123197	0.185278495409845
Merged-chr19-4165491-2	chr19	4164991	4165991	+	840.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 10 of 10)	exon (NM_134148, exon 10 of 10)	-2108.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	4.13670494304883	4.08062137927158	4.47126697626203	3.99239729054667	4.25579059614704	4.41858975992807	-0.00345377575788439	0.994410067938432	0.998918571480046
Merged-chr2-68843535-4	chr2	68843029	68844029	+	803.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17912.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	2.97044761546327	2.8238278773265	3.2872405573662	3.11126290108232	3.08449860254476	3.30466196030677	0.58187322317668	0.400710528743919	0.776924744715187
Merged-chr3-103021026-4	chr3	103020528	103021528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	CpG	482.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	9.04117349957352	9.19012799952701	8.85814886556638	8.87756822235247	9.14279178601735	8.89999804649762	-0.0796028881484395	0.712028901179902	0.924891945289204
Merged-chr15-81960947-4	chr15	81960461	81961461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282040)	promoter-TSS (NM_001282040)	-31.0	NM_001282041	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	5.21898648999532	5.58549631513452	5.20962997843626	5.442700543643	5.34217848059449	5.17058676117065	-0.0605882622091366	0.867395964579489	0.969329865332858
Merged-chr19-47135859-6	chr19	47135349	47136349	+	919.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133746, exon 2 of 3)	exon (NM_133746, exon 2 of 3)	2445.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.62660704040109	4.81539010016993	5.01062199296248	5.06183059096229	5.13282739051891	5.2048228691129	0.685310216674077	0.0744174271559024	0.358882643295617
Merged-chr3-51334101-3	chr3	51333637	51334637	+	667.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	6507.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.79720045223047	8.36624441110306	7.81411017899132	7.8137921670729	8.33802256513066	7.62053939285092	-0.079171172818905	0.792035810656129	0.949867627526955
Merged-chr6-113334911-2	chr6	113334411	113335411	+	562.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_149720)	TTS (NR_149720)	7935.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	5.92062545019353	5.90887170054174	6.00575645758434	5.67413984869752	5.8997055763783	6.24945587129643	0.0177601785138443	0.955866693091316	0.989783387008628
Merged-chr15-103315328-3	chr15	103314912	103315912	+	819.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013866, exon 7 of 8)	exon (NM_013866, exon 7 of 8)	-4974.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	2.42190626447494	2.21218612622614	2.27068784596316	2.45750621840129	2.4194994179521	2.60491475421755	1.19609474118461	0.159759932120311	1
Merged-chr10-51484275-3	chr10	51483768	51484768	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 6 of 8)	intron (NM_008147, intron 6 of 8)	3656.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.94435110249155	4.76634548750163	5.04093184281107	4.28712269484722	4.3173369852415	4.52030989698227	-1.3212628430621	0.00189094755238911	0.0296033798568566
Merged-chr11-63921850-2	chr11	63921350	63922350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018805, exon 1 of 2)	exon (NM_018805, exon 1 of 2)	434.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.34609426081922	3.1312859822989	3.41875539877801	4.25430919052793	4.30959121680738	4.54615043958899	4.09887624130156	5.86549420779666e-09	5.59697295920119e-07
Merged-chr1-134095235-4	chr1	134094722	134095722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16020.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	7.77412273860832	7.89107467955504	7.9044051291372	7.84118235655885	8.18624262346398	7.88961669274606	0.187272094945905	0.413018771718213	0.78473253708546
Merged-chr10-60350938-4	chr10	60350443	60351443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4092.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	7.10576663640407	6.95676801219415	6.52788441311658	7.38155368245887	7.31607732827031	6.86562973554981	0.480734628406854	0.103784002967601	0.429572877650473
Merged-chr8-61909940-3	chr8	61909457	61910457	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7263.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.22455510524488	6.3743128993948	6.35054648038108	6.49260220127172	6.59943125688007	6.35195872016481	0.288204279982368	0.289918319313648	0.687632504231515
Merged-chr1-131379691-2	chr1	131379190	131380190	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	B3|SINE|B2	-100127.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.429650003461	5.13343639320091	5.41790313140571	5.37986668489403	5.3257239126302	5.1981900812555	-0.0422370117975274	0.904625695475005	0.978142219404953
Merged-chr18-39800383-4	chr18	39799900	39800900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26903.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.45871770425345	7.48643336726442	7.49404717384427	7.50362980167735	7.71362934141064	7.55095314034925	0.17189243874655	0.443706252333548	0.803884349333946
Merged-chr1-148906871-1	chr1	148906371	148907371	+	640.0	f0_balb.idr	Intergenic	Intergenic	1015568.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.25880989674632	2.90062043107938	2.89926674428029	2.99203684878892	3.1197582487837	3.15565098312239	0.240698869319663	0.729736345892755	0.930635866770147
Merged-chr1-161057423-2	chr1	161056936	161057936	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172644, intron 8 of 16)	intron (NM_172644, intron 8 of 16)	13224.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	2.75848702854603	2.93910391233175	2.87834356815321	2.95388986574122	3.16238884427821	3.0127182323077	0.896478350696412	0.198896144414249	0.587343866831168
Merged-chr16-95701951-4	chr16	95701460	95702460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	-447.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.24864998300941	8.47758381085172	8.17898866283658	7.91419247938488	8.50160062728777	7.82242193402454	-0.257162140987414	0.344722625161005	0.733279141917758
Merged-chr4-119292650-1	chr4	119292150	119293150	+	558.0	f0_balb.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1863.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	7.32168943406262	7.52815369212137	7.39454645816485	7.23768484059655	7.46077433900662	7.03881863151108	-0.222860871040336	0.373617583872675	0.757529198534216
Merged-chr16-92699730-1	chr16	92699230	92700230	+	736.5	f1_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2401.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.31730185544692	4.23035228709397	4.15995112835632	4.12295080031512	4.03495721745809	4.36111261208053	-0.197445907247145	0.676759779249779	0.912549881054299
Merged-chr19-34526913-3	chr19	34526425	34527425	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	549.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	8.37502098057447	8.44631616637225	8.24275356579906	8.52751788137493	8.67626509151883	8.2723873108196	0.206652423622988	0.354349413019022	0.74154840065609
Merged-chr6-118134867-3	chr6	118134388	118135388	+	976.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	3942.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	3.10676501651873	3.44675545647307	3.46926488561297	3.28744312781791	3.1248340302145	3.53907900717625	-0.108508933584196	0.867431870764228	0.969329865332858
Merged-chr1-195012736-4	chr1	195012244	195013244	+	933.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4655.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	3.58716109821221	3.8611415005371	3.6326443533692	3.37074555972908	3.51697038774058	3.70210334523337	-0.608733899501506	0.293414190252936	0.690276375383417
Merged-chr12-85336578-2	chr12	85336078	85337078	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	intron (NM_145138, intron 1 of 21)	2784.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	2.42207250269246	2.35193592528701	2.67141670410157	2.53271832216703	2.31450869380958	2.62425686980402	0.051605275338904	0.950265217035318	1
Merged-chr4-46553952-4	chr4	46553462	46554462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	12478.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	6.84557789181471	6.96651136136505	7.19950126379038	7.14680230387809	7.45163942040133	7.26854902514804	0.444176060701596	0.0811903431283181	0.376991410213231
Merged-chr6-116263312-2	chr6	116262812	116263812	+	685.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-907.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	3.03915911635719	2.83888025373973	3.02038710795803	2.83575837992801	2.97106194931794	3.14866562992382	0.0931721714515095	0.893111034880799	0.975200520944414
Merged-chr15-34775927-4	chr15	34775422	34776422	+	904.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61433.0	NM_181317	16539.0	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	2.44462992295404	2.30214967446194	2.36933664230819	2.68541110559975	2.51234225217216	2.76420945337977	1.73157857651229	0.0379558248124412	1
Merged-chr1-64615088-4	chr1	64614623	64615623	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025964, exon 2 of 3)	exon (NM_025964, exon 2 of 3)	2045.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	6.41253726804574	6.76008082815031	6.15821020736381	6.7944520913321	7.14191719681047	6.65748289464786	0.643924730156176	0.0383609288461009	0.242464484497945
Merged-chr5-3512771-3	chr5	3512254	3513254	+	650.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-31079.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.41807392077181	3.32768513516909	3.22710071557591	3.2549628844764	2.91855258428861	3.24135468550822	-0.789370874801348	0.233278461441011	0.629682827928185
Merged-chr11-11707047-3	chr11	11706547	11707547	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 2 of 7)	intron (NM_001025597, intron 2 of 7)	16870.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.83027584214072	3.96160614662855	4.20861595687724	3.69366694561594	3.62904437979735	4.06099519798138	-0.637020119444621	0.244383533203933	0.641673237349277
Merged-chr3-88148509-4	chr3	88147973	88148973	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6101.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	5.12736802519169	5.48312331308159	5.58767514379144	5.55310843046621	5.38053624764899	5.75038538169191	0.293354838978238	0.41362987606114	0.785317271192792
Merged-chr11-21048884-4	chr11	21048374	21049374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42450.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.75773434607832	6.91580966676711	6.62977872639668	6.49917316312429	6.34461166069273	6.75214646665992	-0.392584035545519	0.155420478880052	0.525102615179931
Merged-chr5-107597589-4	chr5	107597081	107598081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163461)	promoter-TSS (NM_001163461)	58.0	NM_133248	170823.0	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	5.77919500920453	5.74972646080153	5.80093041019229	5.93984289505449	5.63664922107349	5.93437753311376	0.107963148394449	0.729767158076278	0.930635866770147
Merged-chr19-59892215-2	chr19	59891715	59892715	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51149.0	NM_001033172	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	2.4523978006166	2.56914080832695	2.50498404170009	2.73206486308937	2.71609288131012	3.0632671683913	1.85281769777543	0.0212550472315218	0.16808496198826
Merged-chr2-112217804-4	chr2	112217272	112218272	+	883.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-22069.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	3.68013734328078	3.83648052855213	4.10139298821304	3.90617805563161	3.856712442166	4.52363173227055	0.717477496583811	0.203438563763679	0.593413588082739
Merged-chr13-34250867-4	chr13	34250368	34251368	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87904.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.93742271596317	4.13894046422799	4.03431851004828	4.46124660447559	4.38927669955072	4.45183225860112	-0.0374542120606984	0.944721143232071	0.98786315338489
Merged-chr14-121895379-1	chr14	121894879	121895879	+	571.0	f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15971.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	4.80394124551103	4.98833884039973	4.71654583001512	4.88309248094568	5.01948091711746	4.7425226125053	0.105299920813015	0.79101090704416	0.949694766870106
Merged-chr18-60794604-2	chr18	60794100	60795100	+	595.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9249.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	3.38293660062061	3.0617903773855	2.9762503004007	3.4395161830242	3.49645650659561	3.58240402273211	1.37277580804613	0.0424847144627339	0.258354755610258
Merged-chr5-100559566-4	chr5	100559069	100560069	+	942.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	12636.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.27135067651405	3.8825756788308	3.8792810811146	4.64952829513464	4.67105243078695	4.22091428080859	1.34720987939052	0.00851949580401157	0.0900978910600146
Merged-chr3-90253419-2	chr3	90252919	90253919	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028881)	promoter-TSS (NM_028881)	-439.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	5.64333621929815	5.31468478099614	5.52147743231329	5.79879898115031	5.66394454507368	5.79738772758274	0.467825091459226	0.153149717768161	0.521945521654116
Merged-chr10-77522603-3	chr10	77522136	77523136	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6823.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	6.43741304667197	6.51732481233807	7.02182105815593	6.83692628874241	6.98007243126981	6.54364052281023	0.207463850245858	0.494269120554874	0.831893381268053
Merged-chr2-150779372-4	chr2	150778868	150779868	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-7428.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	4.79134349018119	4.69260772869522	5.08378488887638	4.90474800752575	4.42231287297622	4.72864350367218	-0.373173381794462	0.388517515537794	0.768380148171071
Merged-chr10-80665368-5	chr10	80664951	80665951	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-8380.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	5.21552673428827	4.7282141607293	5.02025986073683	4.92460013652519	5.05867925747979	4.6565925835107	-0.220869317188006	0.596551029922468	0.879982319595371
Merged-chr8-26694571-2	chr8	26694071	26695071	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	129852.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.3383628642385	4.96728978584899	5.60032988873015	6.45345013282215	6.54339392325798	6.59606792237969	2.16750766946792	6.60837712816933e-11	9.11890288691067e-09
Merged-chr7-99107747-2	chr7	99107247	99108247	+	892.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	33397.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.10409124136234	5.01355572118322	5.0259945877323	5.24332933556396	5.19459845117409	5.15999945747657	0.315471371776516	0.375247927609584	0.758624025253248
Merged-chr6-128850113-4	chr6	128849624	128850624	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254946, exon 3 of 3)	exon (NM_001254946, exon 3 of 3)	-23809.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.78970878583688	3.60404330326306	3.47963766854045	3.41205834832319	3.28306233096972	3.76018279906174	-0.510077756141626	0.402271226161637	0.77788018095416
Merged-chr2-148530041-2	chr2	148529541	148530541	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86506.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.43114185614425	5.34534626634594	5.74222505199054	5.55308353212308	5.71011756189195	6.02750494527471	0.490341954156591	0.157927230905288	0.529476893092205
Merged-chr11-63923669-4	chr11	63923170	63924170	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1386.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.41325866114869	3.07851736422097	3.10636401932419	3.64062682009883	3.39390719620913	3.78828864904027	1.52364674529372	0.0208232971395271	0.165836993528501
Merged-chr15-6709837-2	chr15	6709337	6710337	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	1456.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	3.53325738044218	3.51982135729908	3.21834996511106	3.4812814317059	3.76170253919792	3.69385036387919	0.759989081899357	0.212078318700118	0.604439552745312
Merged-chr2-66180040-4	chr2	66179535	66180535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55242.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	3.67025268407113	3.98473877435804	3.88507678289637	4.05065632454603	3.67245546616181	3.63514946452099	-0.163694993013224	0.769080410751384	0.942996711234581
Merged-chr7-44548896-4	chr7	44548398	44549398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-83.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	4.49826345945471	4.60929301415125	4.56494252756936	4.30896889833146	4.89165429665951	4.82363780222547	0.346005109748412	0.440096520275772	0.801567033070239
Merged-chr18-36482663-4	chr18	36482162	36483162	+	788.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28167.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	5.24244620131733	4.77472098632591	4.79408881886194	4.36532886301718	3.8679615019565	4.25661741861838	-1.98561034432111	4.70341636106833e-05	0.00149947076081139
Merged-chr13-45974002-4	chr13	45973526	45974526	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9035.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.67782716551185	6.46961278634837	6.17651827480465	5.95688447151368	6.22456757849252	6.01840410135613	-0.130361288153695	0.708375884483166	0.923684652799343
Merged-chr7-44818269-2	chr7	44817769	44818769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	B2_Mm2|SINE|B2	-1611.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	2.67715207327461	2.8995231047629	3.11690886290863	3.05239687185247	3.02848536286241	3.34913458119429	1.10616028121569	0.129229236021891	0.480791695547038
Merged-chr7-80185488-2	chr7	80184988	80185988	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.28453747271365	3.97863949177539	4.16516972714766	4.7618278074125	4.52875891850758	4.91865235352236	1.50424768178396	0.00121897297739573	0.0210263999854447
Merged-chr2-122152287-2	chr2	122151787	122152787	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 3 of 3)	intron (NM_009735, intron 3 of 3)	4600.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.03098580677246	5.07309257087877	5.52180434920082	6.10682300998532	5.69904599960996	5.97847458666642	1.36187072683271	0.000150188953882695	0.00397864453189153
Merged-chr17-5511657-4	chr17	5511155	5512155	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	19055.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.71778660653112	3.15448029779119	3.5876189764223	3.43285063074908	3.09833179827305	3.50110163936958	-0.583621947981894	0.380865724417359	0.762849943367586
Merged-chr15-77800228-2	chr15	77799728	77800728	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41947.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	5.75430064764427	5.89456673979534	6.24863719967853	6.29128058808615	6.20586145253553	6.30841053170716	0.507407208700312	0.095699779422233	0.412444299584033
Merged-chr17-27028049-4	chr17	27027591	27028591	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	536.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	7.68676091656776	8.11745749581934	7.68189261482709	7.89656288788885	8.24417112718124	7.61306188896745	0.145929826629473	0.597271329396487	0.880307373597075
Merged-chr1-65154990-3	chr1	65154503	65155503	+	762.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24139.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	3.17698836010725	3.52257568756363	3.30918729035322	3.05531302463161	3.12421635401488	3.82728777043563	0.143713058485534	0.84039027220532	0.962819298477451
Merged-chr1-152688192-3	chr1	152687700	152688700	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62351.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	4.96725345621814	5.00778691150569	4.99368280186068	5.02375641249788	4.81219280711414	4.87607731402612	-0.185420884163706	0.622630243557437	0.891225289534451
Merged-chr10-115251431-4	chr10	115250954	115251954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	39.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	8.75871057076687	9.07166762534631	8.23505078217725	8.59604607213187	8.64941179959522	8.11885516461646	-0.358129209320736	0.216183211114521	0.609623907222594
Merged-chr1-151584873-7	chr1	151584368	151585368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13495.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.90353150599767	6.72399648850923	6.58802891327944	6.55821992605427	6.56719050560973	6.42810158583261	-0.360803326158249	0.174022511199699	0.553210993472106
Merged-chr7-45700910-4	chr7	45700378	45701378	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009800, intron 2 of 8)	intron (NM_009800, intron 2 of 8)	911.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	2.62243836153198	2.60714037002978	2.48497740540487	2.59551440811805	2.38355539335309	2.68689932290733	-0.108692838493841	0.891712100974991	1
Merged-chr11-100344487-4	chr11	100343977	100344977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	10070.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	8.29997759881775	8.24388000041971	7.96659501198004	8.11467401358083	8.40606497685965	7.94332438722221	-0.00887282069710755	0.970833071223154	0.993568313863232
Merged-chr2-165951844-2	chr2	165951344	165952344	+	621.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-40793.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.99252078763999	4.06225365318525	4.37311524844757	4.04666732857125	4.22201053371978	4.47829719482305	0.305932118953079	0.536253107314747	0.85392789486322
Merged-chr15-86220374-4	chr15	86219934	86220934	+	949.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	5975.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.32762335110995	6.41955013866336	6.53529629247942	6.3471784540583	6.26576338797914	6.36210382169094	-0.168271739992003	0.533810893825181	0.852703721509036
Merged-chr7-6168712-2	chr7	6168212	6169212	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3801.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	3.08842198343185	3.12093994553623	3.13802906382681	3.42160523436723	2.924711239641	3.02805544950872	0.122985078226538	0.857812567748845	0.966785186918462
Merged-chr10-68378346-4	chr10	68377850	68378850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-57208.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	5.68262240059896	5.47494437590003	5.61597011758305	5.36883502045046	5.65882124109037	5.41852732735998	-0.177394918269315	0.597387020774178	0.880373726631028
Merged-chr11-118211228-3	chr11	118210736	118211736	+	964.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	1506.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.16114893025367	8.15115924330304	7.67209712498313	7.25961757950962	7.57089711145571	7.24461807474055	-0.932366347062164	0.000361463047762286	0.00811784541921843
Merged-chr1-54557688-4	chr1	54557191	54558191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163314)	promoter-TSS (NM_001163314)	-7.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	5.97148973511301	5.78693315246388	6.22055644945387	6.07945969099571	5.89509192821411	5.86434177971432	-0.0749783255543084	0.810268931229144	0.955010230317359
Merged-chr17-56884982-4	chr17	56884464	56885464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030141, exon 11 of 14)	exon (NM_030141, exon 11 of 14)	9331.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	4.63182534780577	4.30883754735814	4.33938406771257	5.05848559548876	4.57233718421735	4.36150105012256	0.634496306035937	0.184217950465787	0.567869251150334
Merged-chr3-54724154-8	chr3	54723660	54724660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11204.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	5.55440348092241	5.45831482343151	5.89877026324618	5.25968761482216	4.97493184410184	5.55304771101099	-0.720155907497231	0.056561633723463	0.30666068665814
Merged-chr15-31602984-2	chr15	31602484	31603484	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026546, intron 1 of 4)	intron (NM_026546, intron 1 of 4)	868.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	4.7793011828014	4.77987386183787	5.07724245269499	4.90500706491431	4.75700404275682	4.58177407260657	-0.263150825192882	0.518979085046855	0.845552499629511
Merged-chr1-144263531-3	chr1	144263032	144264032	+	835.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14428.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.32721238159041	5.16250769632767	5.00694233966471	5.34755440070755	5.50508793444482	5.37879273468265	0.467737961620748	0.185873504003218	0.570202128045266
Merged-chr2-128764248-3	chr2	128763747	128764747	+	625.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54056.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.51113790211112	4.76943312890267	4.37900764260263	4.6937291943687	4.43139198879305	4.40164778785176	-0.136832059925055	0.759021573157367	0.940311236380535
Merged-chr11-50212503-2	chr11	50212003	50213003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	8.24362380650384	8.39788186868708	7.61960341181692	7.61919957320291	8.06505575051929	7.36907081577569	-0.580773210624305	0.0608072423346482	0.319402122352213
Merged-chr8-83972818-4	chr8	83972318	83973318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008854)	promoter-TSS (NM_008854)	-160.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	5.92011262934532	5.39411844186083	5.66945112437023	6.34418292681959	5.47476274535312	5.70501780329754	0.390422158882975	0.325142923974721	0.717970213571373
Merged-chr11-76458972-4	chr11	76458526	76459526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	9439.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.41028663219886	5.24738320127359	5.23162656649967	5.18318105459787	5.22309061793538	5.1965791938909	-0.202665333260368	0.55992471094105	0.865168019835518
Merged-chr2-129607101-4	chr2	129606552	129607552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	11590.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.18833212379241	5.00950031684681	5.3781159545414	4.93302177874611	4.94721826688551	5.07038491033508	-0.444170089136566	0.235121034196765	0.63133958349827
Merged-chr11-98217626-3	chr11	98217131	98218131	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	14326.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	5.34892212129305	5.14373260219904	5.10902697983351	5.26924579992659	5.53365317975933	5.59647307860609	0.521215583671542	0.141507041725501	0.502183459290427
Merged-chr11-68474701-4	chr11	68474197	68475197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-28322.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	7.07058231862972	6.5144005127158	6.60722625415302	6.66996442183782	6.35999953641168	6.83756189592364	-0.205952626292632	0.50374314403463	0.837170638508299
Merged-chr11-69323901-4	chr11	69323409	69324409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	-36.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	8.05774269082481	7.99718363385703	7.61343872112736	7.97150009053875	8.20987153401598	7.69906832000624	0.105387246105041	0.684267803684421	0.915825160524325
Merged-chr8-84104973-4	chr8	84104479	84105479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357322)	promoter-TSS (NM_001357322)	-182.0	NM_172502	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	5.6266605412455	5.50779752476609	5.7393217794348	5.57890656916254	5.40577228669209	5.35299773340243	-0.323259551066463	0.328468614886125	0.720626901875831
Merged-chr1-192753493-4	chr1	192753006	192754006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	17713.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	5.14063228959856	5.21071623660999	5.25981101821101	5.85706358758289	5.93541739522927	5.92736696526996	1.33318425571119	3.30059170187334e-05	0.00111685902533337
Merged-chr8-105325639-2	chr8	105325139	105326139	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025486)	promoter-TSS (NM_025486)	637.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	4.61509720113884	4.72013372083469	4.63195203648398	5.08373233862937	4.8715240330406	4.82017236519445	0.621495150679703	0.117318279744054	0.457335180180052
Merged-chr10-83360141-4	chr10	83359623	83360623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026579)	promoter-TSS (NM_026579)	-98.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	5.53450916064747	5.18558954406768	5.52288334459514	5.75235158092308	5.67281765442208	5.09047357294465	0.244332924896233	0.522643079935314	0.847682942091387
Merged-chr6-124280180-1	chr6	124279680	124280680	+	581.0	f0_balb.idr	Intergenic	Intergenic	-24471.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	5.90089105740183	5.77708450804241	6.01824470656922	5.84364102054164	6.09827959537286	6.18366514679407	0.264685467379762	0.385555688645862	0.766591069902819
Merged-chr16-32598143-3	chr16	32597667	32598667	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10729.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	4.79280614690123	4.37213673700919	4.76341532597261	4.43149214767753	3.76148573512177	4.56730896071159	-0.898769797965542	0.0957552293503992	0.412593916616851
Merged-chr2-11333460-4	chr2	11332952	11333952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6037.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	6.46912777508764	6.7876893271349	5.84355047687974	5.96192834430039	6.35625878402008	5.63948025041783	-0.666651175444466	0.0866488027981747	0.389912583593668
Merged-chr12-38787893-4	chr12	38787391	38788391	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	4180.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.78777497249365	5.54567142060877	5.50382170825591	5.36072304782272	5.44849133238375	5.21567865306288	-0.514817578209754	0.131076108276279	0.483837071958386
Merged-chr11-99181370-2	chr11	99180870	99181870	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26293.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	2.18406582201245	2.22794385184712	2.24581196446895	2.32042561872217	2.18869663405539	2.57358661348496	0.975918117593389	0.262890626260923	1
Merged-chr4-88708211-2	chr4	88707711	88708711	+	985.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14297.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	7.00778939283634	7.22037049343239	7.26884043638847	6.80628045198464	6.76314695007583	7.10553522901505	-0.420612399086176	0.103022086707021	0.427949767396425
Merged-chr11-118239040-2	chr11	118238540	118239540	+	540.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	IMPB_01|Satellite|Satellite	9552.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.77223290985949	5.89025122780266	6.19580599024496	6.23676685242212	6.3382569186119	6.35193163355029	0.60812105160045	0.0407008152542963	0.251590337019958
Merged-chr1-89070922-4	chr1	89070393	89071393	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	CpG	478.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	4.73208866554967	4.66845700955755	4.48350630046535	4.98886239989461	4.61059420322001	4.68136075703127	0.304589676174966	0.471357133727049	0.819967477487043
Merged-chr3-88336344-4	chr3	88335863	88336863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178246, exon 1 of 22)	5' UTR (NM_178246, exon 1 of 22)	103.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.20748922337243	7.42820760310039	7.39854789531657	7.59472597188085	7.29078216701489	7.49663955984123	0.171177954341455	0.477244508572366	0.823211450952012
Merged-chr4-3626847-4	chr4	3626349	3627349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-29657.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.79504499942195	7.76316966994342	7.54832397741116	7.62419344526147	7.75397372648314	7.34597807888862	-0.168694073409576	0.48635610513216	0.827801231326053
Merged-chr6-97418995-2	chr6	97418495	97419495	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	RLTR11A2|LTR|ERVK	40291.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.28038903383595	4.1753103484047	4.50573096170786	4.13431228498105	4.07568991468835	4.49363102477902	-0.224848137191542	0.640842242774485	0.898653895821881
Merged-chr6-125684797-4	chr6	125684303	125685303	+	817.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-5616.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	4.74939382058785	4.52888797976827	5.03702904856001	4.42219938858458	4.78423074699636	4.63907733547686	-0.346924206187081	0.43166497854829	0.797026063132057
Merged-chr5-36564759-4	chr5	36564274	36565274	+	949.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	17623.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.66087102654221	7.05568126007732	6.47551937589732	6.41044313048988	6.82227346050749	6.78794511625955	-0.119107480629937	0.69413215000774	0.919190704827629
Merged-chr5-130255544-4	chr5	130255040	130256040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023248)	promoter-TSS (NM_023248)	-10.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	7.49223149254453	7.72250563527347	7.35494860706076	7.59178404035704	7.84499078295667	7.52903397155733	0.190355027539319	0.439691359270398	0.801301822729232
Merged-chr9-21135174-4	chr9	21134662	21135662	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3887.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	6.50845655510436	6.2422442115963	6.62315553525586	6.85797829912931	6.85049889542463	6.47171870074936	0.457444385228054	0.108988674102825	0.44106937375527
Merged-chr1-88300637-2	chr1	88300137	88301137	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6075.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.01474921839876	3.12132894088423	2.97823749712046	3.02243930961954	3.12927802360352	3.68941264357691	1.10095454335301	0.119992931710783	0.463187284884396
Merged-chr15-78865097-2	chr15	78864597	78865597	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9568.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	6.41854798983364	6.15400572527336	6.21185740575775	6.53030915093872	6.48832103581096	6.04563689550578	0.189902069036279	0.528324874320515	0.85053360857083
Merged-chr11-98024607-2	chr11	98024107	98025107	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1980.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	4.60992484741328	4.68611247276608	5.2694652268017	5.0046349306798	5.30193373308543	5.36070358199947	0.752202278696823	0.0756367923363858	0.362116583240851
Merged-chr10-45067142-4	chr10	45066642	45067642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011156)	promoter-TSS (NM_011156)	-72.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	6.39285068410111	6.24400553695519	6.28026241411538	6.51920416533486	5.95972371828809	6.28041787960332	-0.0659922724818397	0.828999864004315	0.959932344512127
Merged-chr1-177442682-2	chr1	177442182	177443182	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355099, intron 1 of 1)	CpG	331.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	4.36001878630818	4.18764507355747	4.67920628972513	4.69426310494096	4.37347409929162	4.63111831961491	0.387830428232331	0.399336812335413	0.775775529529442
Merged-chr10-44676716-4	chr10	44676215	44677215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217967.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.84219929319975	5.01110758388932	5.30053904448711	4.66446768079154	4.65553749183638	4.92401080609846	-0.688566522896183	0.0904670738394946	0.400062940052969
Merged-chr10-4334468-4	chr10	4333962	4334962	+	989.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53013.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	3.93896184466033	4.1369489703232	4.05966465099817	3.50148665137839	3.57313059510363	3.62567302056924	-1.60384226465487	0.00330133845495494	0.0451954212174878
Merged-chr14-61360378-4	chr14	61359871	61360871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026598)	promoter-TSS (NM_026598)	74.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	4.79059641828474	5.05105297404799	5.13045674675041	4.78043500453866	4.70410718961119	4.96259948332893	-0.403635858582524	0.307642374244524	0.703752864027556
Merged-chr7-19263661-2	chr7	19263161	19264161	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282022, intron 3 of 12)	B1_Mus2|SINE|Alu	8193.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	2.33450676922995	2.41903211287708	2.58566049538601	2.70118275311395	2.34495719298814	2.78115594605703	1.0013808247281	0.23211695980793	1
Merged-chr4-132760491-4	chr4	132759997	132760997	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3326.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	4.54440786541394	4.56376473720275	4.90143156794315	4.64905610556411	4.49800096911388	4.59623836775095	-0.21461381908794	0.613382796463956	0.887185353929309
Merged-chr19-34673718-3	chr19	34673230	34674230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 5 of 6)	intron (NM_172838, intron 5 of 6)	32841.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	3.12623640770112	2.98840874493208	3.10485881222625	2.75474483678799	2.58933076287393	2.68683688584787	-2.17752779348818	0.00488432328567376	0.0602573485915375
Merged-chr4-155735760-2	chr4	155735260	155736260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101506, intron 2 of 3)	intron (NM_001101506, intron 2 of 3)	956.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	5.47208240876538	5.46055586671538	5.82400202635707	5.15810843685456	5.30599719099206	5.36185456398959	-0.59961138629983	0.0864466344702559	0.389424046397112
Merged-chr5-146231080-4	chr5	146230553	146231553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359990)	promoter-TSS (NM_001359990)	-197.0	NM_001359990	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	6.64397961196224	6.43329722910535	6.5778027252952	6.82099083179235	6.37554627509432	6.51508455440159	0.0467456374460794	0.868837132771422	0.969741115273568
Merged-chr19-4113906-4	chr19	4113407	4114407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_075078)	TTS (NR_075078)	7668.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	7.79040143506865	8.13596095922525	7.65923064105049	7.72796004438179	8.09843168561706	7.57883667686927	-0.0777356902992345	0.77148308961225	0.943614978016208
Merged-chr2-18677863-3	chr2	18677390	18678390	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007552, intron 1 of 9)	intron (NM_007552, intron 1 of 9)	872.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	3.1374603382418	3.27570246950942	3.04016514587355	3.46770554635268	3.20292950474676	3.23778991011919	0.608332540488427	0.34824811463247	0.736107144694558
Merged-chr17-33939866-2	chr17	33939366	33940366	+	912.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	464.0	NM_001185182	14976.0	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	5.42993926649539	5.29024593029342	5.54790622505053	5.41621524075979	5.55403433673612	5.81156252478193	0.336169752282758	0.324816933831381	0.717739181095052
Merged-chr2-24957350-2	chr2	24956850	24957850	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026021, intron 4 of 5)	intron (NM_026021, intron 4 of 5)	-5072.0	NM_001355561	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	3.37815695995178	3.32287419089938	3.36108884119438	3.68807810249415	3.5067690063396	3.59924654848282	0.909858546664687	0.116861100733355	0.45650957964207
Merged-chr7-4228089-2	chr7	4227589	4228589	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9665.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.95667639610498	4.6951564289684	4.85402721696996	5.74183802452236	5.80248021758826	5.9261243699937	1.95839812022125	3.6982310308525e-08	2.95602697036672e-06
Merged-chr4-8854188-4	chr4	8853694	8854694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 29 of 38)	exon (NM_001277149, exon 29 of 38)	102870.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.04194965908647	6.12707345501955	5.90686112411045	6.31098015980929	6.48118038182962	6.3037638455794	0.565645394207111	0.0467728010622914	0.273709208157475
Merged-chr3-101556789-3	chr3	101556293	101557293	+	763.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47914.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	2.53607889912102	2.71555982909184	2.8570727688917	2.90136921158523	2.66301982505641	2.98785861456914	0.762847962614405	0.315540127435148	0.709834518424648
Merged-chr3-53464702-2	chr3	53464202	53465202	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	885.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	5.16098199067937	5.2139432411493	4.82191591005901	5.15644778006029	5.00793251687159	4.84855077645289	-0.154493618607468	0.691144200094107	0.918215046884617
Merged-chr10-63025186-2	chr10	63024686	63025686	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026085, intron 1 of 9)	intron (NM_026085, intron 1 of 9)	674.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	4.51090140765307	4.40311791293116	4.48885400181115	4.59795322010996	4.64909523141354	4.33234291318166	0.192455401186443	0.657452819473942	0.904798742244684
Merged-chr4-105285748-1	chr4	105285248	105286248	+	821.0	f1_balb.idr	Intergenic	Intergenic	128401.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.56483095617424	2.79831144699233	2.69029986812301	2.96087385080326	2.86453443505771	2.95086210705526	1.21359316992278	0.102390014779882	0.426772136697279
Merged-chr11-70500990-2	chr11	70500490	70501490	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4284.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	4.72723491387335	4.92644655119992	4.78494258396983	4.70230652459137	4.46677173914367	4.69579734553225	-0.468475727188079	0.252048347401784	0.649617120850337
Merged-chr2-33138685-4	chr2	33138163	33139163	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-7227.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	4.60365850770688	4.14049331877307	4.55078936837061	4.066805638804	4.45086776754212	4.61638084267861	-0.127994867363899	0.795340819849892	0.951091875905472
Merged-chr16-33248403-2	chr16	33247903	33248903	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3053.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	2.39280436810406	2.28890663874435	2.50264958947229	2.22928829421337	2.30883193930151	2.45198509614649	-0.415529478006648	0.620573946491793	1
Merged-chr2-178078432-3	chr2	178077933	178078933	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162922)	promoter-TSS (NM_001162922)	-8.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	3.34782899700659	3.34449953237543	3.23432528469088	3.59338666374279	3.29706243355314	3.53394347169797	0.624494684349989	0.304674206337189	0.701027910687293
Merged-chr2-36230497-4	chr2	36230003	36231003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	77.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.5885927494876	7.03934376051773	6.74934894790314	6.87713467799694	6.83504876022274	6.19815278362214	-0.195667510655464	0.537305753024402	0.854381181468677
Merged-chr6-125357180-2	chr6	125356680	125357680	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 2 of 9)	intron (NM_011609, intron 2 of 9)	7457.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.36236683990231	3.3324794282891	3.63083827739955	3.35027476048298	3.35667676824649	3.44228304098179	-0.226952681417256	0.70437027270643	0.922392522355862
Merged-chr5-66082760-2	chr5	66082260	66083260	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	15419.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.44986720172823	5.10109016992772	5.30098587186689	5.66566614470492	5.84121853559444	5.26489498779138	0.641093499979628	0.0815287087674945	0.377656337979496
Merged-chr1-74438180-4	chr1	74437681	74438681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28797.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	6.83728380105168	6.72047424487408	6.12430768993066	6.43104785675263	6.21300075025533	6.1391294477929	-0.550949078891037	0.0840159337711713	0.383661081936741
Merged-chr10-4601785-4	chr10	4601223	4602223	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10266.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	5.78412716163325	5.05103604419738	5.74165461805929	5.51614555330692	4.93881605796698	5.6029951760758	-0.355254278748506	0.405269538354791	0.780049815379569
Merged-chr2-150788903-3	chr2	150788401	150789401	+	897.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2105.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	4.28520430099106	4.2232074072533	4.55875457438008	4.37697395893362	4.16101759256384	4.54706189710243	0.0166428589377484	0.971577957790342	0.99377981119604
Merged-chr13-20787142-4	chr13	20786625	20787625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6988.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	7.30026562640185	7.27390224607973	6.7155363326751	7.40289873343971	7.52054484791376	7.10986426429904	0.338235128005152	0.235272883853366	0.631523149768409
Merged-chr3-108113903-4	chr3	108113457	108114457	+	805.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 5 of 8)	intron (NM_010306, intron 5 of 8)	20891.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	4.19995286093867	4.1790237030551	3.73731249246197	3.9862471299465	3.53588297600349	3.75394095278556	-0.903372864851013	0.111650126961852	0.446313714155454
Merged-chr18-4367331-4	chr18	4366828	4367828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8264.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	6.66130718026617	6.45804111246147	6.53176503056203	6.50446272791077	6.51626710554122	6.76729211774528	0.063788100372153	0.812210390519412	0.955516368820518
Merged-chr13-81163363-3	chr13	81162882	81163882	+	892.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	199308.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.51609681516271	3.71556169920794	3.95180335146412	3.72651542665547	3.78570682714152	3.62076564445309	-0.0491173457395503	0.930080893917316	0.984382342734132
Merged-chr8-79225783-4	chr8	79225287	79226287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026315, intron 2 of 5)	MTEa|LTR|ERVL-MaLR	22796.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	4.64150270304466	4.41876805686129	4.26160056036043	4.14134543356968	4.27499325415216	3.97522662981086	-0.826283758890242	0.0878529089398726	0.39328429335974
Merged-chr5-102072239-4	chr5	102071736	102072736	+	948.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.67013703002741	6.51282109250071	6.27792228163158	6.69563520963029	6.87506481844321	6.33865986261991	0.258718877670275	0.384230389006441	0.765372305782707
Merged-chr4-155895401-1	chr4	155894901	155895901	+	731.5	f0_balb.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	3526.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	4.56926356444079	4.64228631767474	4.88626515974719	3.90740757041434	3.30249091168313	3.75406166682107	-3.24359082636463	2.08836356887779e-07	1.36182253792463e-05
Merged-chr9-72526250-4	chr9	72525751	72526751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	5607.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	3.1583733202683	3.43834668419663	3.4626372283085	3.14771241325606	3.07702631273401	3.26254966044945	-0.821756009652273	0.199556229107657	0.588109184373094
Merged-chr2-11203552-4	chr2	11203105	11204105	+	916.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	31223.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.5315941036013	3.52897238767937	3.5309489849633	3.81602810872197	3.82560625917261	3.96029321808944	1.13493630582162	0.0365651130071632	0.235324767576078
Merged-chr15-97351333-3	chr15	97350831	97351831	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-104044.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.3383406854313	4.3128013488414	4.48994890209277	4.35692316999271	4.35801027085891	4.3890863456083	-0.0242347658960637	0.956001668268998	0.989807313282509
Merged-chr2-160175256-3	chr2	160174755	160175755	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152239.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.99163843093402	4.27424946038353	4.18272256368247	3.95509469276992	4.16655474406602	4.06381751916658	-0.247186347522862	0.613927968125862	0.887338990172734
Merged-chr4-9131803-4	chr4	9131314	9132314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-137479.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.27936702698847	4.42059261743296	4.11387608079183	4.09077527643148	3.97720368235616	4.36347171150554	-0.390442300471354	0.422369701703046	0.791187261128029
Merged-chr14-45239211-4	chr14	45238720	45239720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	19503.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	3.11966188538173	3.00779227645548	3.01631421457235	3.28746999565022	2.92226106364884	3.37444414262428	0.660882080663927	0.333397714827328	0.724355241927838
Merged-chr13-113627304-4	chr13	113626818	113627818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8754.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.07597552784854	4.32579966125757	4.36243504869339	4.1480621530701	4.49018359031166	4.0565420614116	0.00249839981702351	0.995952492745952	0.998961028701257
Merged-chr15-73724017-2	chr15	73723517	73724517	+	685.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-780.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.67066029192064	4.72047708045034	4.5433657277224	4.68767764911802	4.69511040739591	4.56781376880826	0.00746319805957478	0.985443966529654	0.996904015210561
Merged-chr5-33222166-2	chr5	33221666	33222666	+	864.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3928.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	3.27624764432136	3.32870357053628	3.41923913316927	3.20610450315607	3.18414286674286	3.58865926442077	-0.0370071600894347	0.953070610620937	0.989359300570295
Merged-chr10-80697958-2	chr10	80697458	80698458	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	3862.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	3.54508318624777	3.57729197510633	4.1268200605075	3.68436173975561	3.69550252641144	4.35021361916775	0.520954987465233	0.399433322489586	0.775842801426137
Merged-chr3-69633616-4	chr3	69633112	69634112	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34652.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	7.09288891299051	7.13524502489742	7.14559269687842	7.01027694654054	7.07971915913881	7.10376543652129	-0.0899942039055298	0.70038578455638	0.920919335036368
Merged-chr19-46514870-2	chr19	46514370	46515370	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 5 of 5)	MIRb|SINE|MIR	13222.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.11902869061629	4.24164310633619	4.71461705637042	4.19564408693961	4.09923836262035	4.56432357028993	-0.212597999148954	0.674819365773232	0.911865018776908
Merged-chr6-110040532-4	chr6	110040058	110041058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-604954.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	4.17066111044636	4.06589865544456	4.17871884210232	3.86694001723187	3.77361375901123	4.5259281031389	-0.13228433272763	0.809663910839453	0.954756950429109
Merged-chr10-44270997-2	chr10	44270497	44271497	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	intron (NM_001358596, intron 1 of 6)	2658.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	5.02358921607035	5.10670998186044	5.26796292976787	4.76729603907166	4.8521068727935	5.52114701025405	-0.108452764917174	0.798423497562595	0.951930937621884
Merged-chr3-95142818-4	chr3	95142344	95143344	+	919.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-484.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	4.77406709852289	5.06317536499159	4.86685059510219	5.04066610526883	5.08060731707789	5.04177323120385	0.31109429993202	0.411734089345515	0.784025679251701
Merged-chr4-52917035-1	chr4	52916535	52917535	+	825.0	f1_balb.idr	Intergenic	Intergenic	-5243.0	NM_146839	258836.0	Mm.331617	NM_146839	ENSMUSG00000051593	Olfr272	MOR262-7	olfactory receptor 272	protein-coding	2.78793996525948	3.23226371246573	2.99918728212235	3.11333024693164	3.11006323570965	3.35668985449991	0.740659754443359	0.296422849776918	0.693122171820648
Merged-chr10-4385658-1	chr10	4385158	4386158	+	566.0	f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	B2_Mm1t|SINE|B2	1817.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	3.42987987870335	3.51543959871949	3.5947742687374	3.40163083300261	3.111483817597	3.50928458106908	-0.649713326270561	0.293082248196302	0.690159101850425
Merged-chr4-137951845-3	chr4	137951257	137952257	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-41699.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.50709519669805	3.72738791093205	3.55294715778223	3.42857899334779	3.42357892098917	3.8241473474103	-0.135790111494847	0.817835307809594	0.956835450074313
Merged-chr5-124478389-4	chr5	124477842	124478842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-107.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	8.48609142498622	8.49269623318266	8.11417780889103	8.31619754746791	8.63919339813375	8.35392413756992	0.0932845559551783	0.69162221976764	0.918398695262194
Merged-chr8-85026824-4	chr8	85026305	85027305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026760)	promoter-TSS (NM_026760)	-28.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	8.22198443110719	8.57058754764417	7.89099587818791	8.1387472201807	8.10927973359321	8.1148538029317	-0.204626779756497	0.41828843248218	0.788588731807313
Merged-chr6-148896190-4	chr6	148895674	148896674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	63.0	NM_001301351	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	5.02529963672905	5.14542845439955	5.04034599448815	4.73403471958497	4.90153259936632	4.9647607655085	-0.446166358041726	0.236960504942944	0.633412320506677
Merged-chr11-120492246-2	chr11	120491750	120492750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013770, intron 1 of 10)	CpG	413.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	7.48933362752897	7.65894815977193	7.45702860536111	7.31952707012205	7.6070174506218	7.55407028215015	-0.0592484356489523	0.801507112346307	0.952995299515894
Merged-chr5-21568057-1	chr5	21567557	21568557	+	547.0	f0_balb.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	24530.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	4.74565507813065	4.65158642351946	5.0389069373278	4.9169509039281	5.1485720903863	5.28885886782792	0.679962546214779	0.0863509355493448	0.389239267548799
Merged-chr10-34186831-2	chr10	34186331	34187331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	20720.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.70443050166635	5.80627786599129	5.90463347254199	5.92531385077156	5.84067509343778	6.05459963733734	0.238284752648167	0.431893328576431	0.797114750192572
Merged-chr5-117287659-4	chr5	117287196	117288196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018858)	promoter-TSS (NM_018858)	-132.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	4.8661528531148	5.02199740125717	4.69418130269502	4.84943178041019	4.65847105165424	4.45102941945993	-0.470730068126471	0.262176297511488	0.660045546680462
Merged-chr8-125533935-2	chr8	125533435	125534435	+	707.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	35928.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.18446477078803	3.10368330468641	3.31894543774248	3.42051087947742	3.25443797731895	2.96630703550659	0.122805459858304	0.854664622240408	0.965987623019113
Merged-chr5-139470612-4	chr5	139470117	139471117	+	934.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159908)	TTS (NM_001159908)	-10083.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	3.84449040677437	3.51121106841852	3.77637225013567	3.49661808102415	3.80433790040895	3.58336676702521	-0.252111489931812	0.661763335791519	0.906495637422278
Merged-chr1-191906678-4	chr1	191906172	191907172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009579)	promoter-TSS (NM_009579)	-109.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	7.34654408327604	7.187277067607	7.28833784980591	7.52482139757914	7.00890820712085	7.26557514096658	0.00901180900341843	0.972346330956607	0.993868590220018
Merged-chr19-37072691-3	chr19	37072190	37073190	+	691.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 7 of 10)	intron (NM_198300, intron 7 of 10)	-101153.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.50740273732265	3.77127759632378	3.48665287179204	4.17964448812411	4.08311598652388	3.79402696866781	1.38222372996411	0.014813990045096	0.131467841688603
Merged-chr10-8779868-2	chr10	8779367	8780367	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	L1MB3|LINE|L1	106203.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.48866977129463	3.74080081350839	3.935067296581	3.50393033003206	3.41681250650009	4.04583389977902	-0.167911691545279	0.785196502726751	0.947850129107983
Merged-chr7-118171225-2	chr7	118170725	118171725	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	intron (NM_001031814, intron 31 of 62)	-41600.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	5.33160210465524	5.31766130393028	5.50809201871332	5.58156484921762	5.6529048225749	5.85085336688883	0.592293039501587	0.0721354758598188	0.352744797756153
Merged-chr11-115100678-4	chr11	115100187	115101187	+	833.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	9256.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	3.60320747226971	3.78720560712637	4.06659160628827	3.7551424465336	3.7569654541717	3.59243011910389	-0.379660162943672	0.497024959908782	0.833442633454308
Merged-chr19-26607362-4	chr19	26606884	26607884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	2224.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	6.27790563183854	6.13019854611257	6.20043337209886	6.13814074682991	5.94726307014768	6.15667382267983	-0.216666272951387	0.449209107881971	0.807594795348397
Merged-chr5-53818008-4	chr5	53817488	53818488	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	8361.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	2.19191677569314	2.20506004371753	2.22563109866848	2.66755655255768	2.2964995876611	2.50470837970499	1.9700994132106	0.0279546509916348	1
Merged-chr14-57730514-4	chr14	57730014	57731014	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	3904.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	5.16412602180189	5.29019292239829	5.60501897231175	5.07349950627114	5.01192184927036	5.7376727013741	-0.105136764342592	0.798786300403254	0.952063885260145
Merged-chr11-103116172-4	chr11	103115678	103116678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-147.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	7.43143420274468	7.42730297749926	7.1128363369864	7.51160845174258	7.68117545869026	6.95702133921008	0.136936253977178	0.633707742544515	0.896060120341977
Merged-chr13-45107182-2	chr13	45106684	45107684	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105088.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.72750714504768	5.90281258148217	5.59540626405477	4.14184362208744	4.24062058928581	4.60270203717928	-3.26333872288881	4.78094805751807e-14	1.14643552152727e-11
Merged-chr15-67782151-4	chr15	67781756	67782756	+	934.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	476600.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.82285287941015	3.72480669907374	3.69627157202341	4.13772175557081	3.61621276168643	4.59252466578326	1.23874807763206	0.0383415994922585	0.242426125421873
Merged-chr10-51457071-2	chr10	51456571	51457571	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23541.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.49713958224451	5.68703109089385	6.0240371716532	5.42683392828833	5.93116542598091	5.95541370842629	0.088217186313401	0.805884141474894	0.954045011009917
Merged-chr11-103233121-4	chr11	103232611	103233611	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 6 of 15)	intron (NM_016896, intron 6 of 15)	-14679.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	3.26861867441375	3.21014485688978	3.20666952569668	3.31239833300922	3.01566366244476	3.22077446157997	-0.189473759568371	0.767424032192437	0.942617496111852
Merged-chr7-81346036-2	chr7	81345536	81346536	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-802.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	4.30460594104354	4.80623341515611	4.46380561104943	4.73174217669399	4.48044449530755	4.77336538388405	0.268752355212548	0.552821851342336	0.861940911171568
Merged-chr8-92850475-1	chr8	92849975	92850975	+	554.0	f1_c57bl6.idr	intron (NM_008610, intron 12 of 12)	intron (NM_008610, intron 12 of 12)	-4858.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	3.19414460464139	3.01715374272573	3.22791448213934	3.31235273360564	3.62203011943969	3.468750350803	1.3469064131871	0.0339667549106749	0.225474403344775
Merged-chr4-135872932-2	chr4	135872432	135873432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026383, exon 2 of 3)	5' UTR (NM_026383, exon 2 of 3)	914.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	7.76083272357497	8.02998445329994	7.67611727366253	7.96703600229369	8.14335459462045	7.70433621765537	0.174612278336215	0.479527208041272	0.824305338843057
Merged-chr16-44757361-3	chr16	44756864	44757864	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8372.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	5.63843333313628	5.61882726972274	5.38845577482487	4.99509700925013	5.01404801121894	4.89175935956766	-1.18512966499183	0.000873728446468893	0.0162388198735277
Merged-chr2-102998542-4	chr2	102998041	102999041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74972.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.00832513786678	5.69600368419162	4.95765716337107	5.52596875293524	5.36485340078162	4.98473141537033	-0.601255855717127	0.176029712541827	0.556183038586686
Merged-chr6-38826058-1	chr6	38825558	38826558	+	545.0	f0_balb.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	11253.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.56112724434361	3.51857619541313	3.83304748818663	3.23360106047581	3.39257011690257	3.45144011735323	-1.02647646053101	0.0880315734175203	0.393677438925061
Merged-chr9-62955092-4	chr9	62954595	62955595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	25784.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.71379874404714	6.4283384698285	6.54019363385522	6.58747800763104	6.70327534316313	6.08469855561935	-0.10706678361336	0.725692189155009	0.929707128236285
Merged-chr2-25197274-2	chr2	25196774	25197774	+	935.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-461.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	6.33985393744326	6.14883353046915	6.68895601623069	6.53996392811652	6.61045014675419	6.80603374199563	0.4063910512938	0.165708785379079	0.540863657924297
Merged-chr12-3873719-6	chr12	3873201	3874201	+	900.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-11457.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	7.27515700982059	7.38852552419038	7.54242583256865	7.46051663838907	7.60358796862392	7.58983568753138	0.223069466781551	0.333652756554184	0.724517434137507
Merged-chr9-35115576-2	chr9	35115094	35116094	+	733.75	f0_balb.idr|f0_c57.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1134.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.03255876638158	5.81772245482139	5.97395946496291	6.37413950742615	5.91212849360145	6.32643157258379	0.461053140187657	0.141732067412201	0.502522098474073
Merged-chr10-21907246-4	chr10	21906716	21907716	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25032.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.03195485387761	5.783621421448	6.4873711906454	6.16620527869169	6.22270942841194	6.17979242627813	0.117996484554539	0.717214770290319	0.926979087819795
Merged-chr11-69067063-3	chr11	69066580	69067580	+	919.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3729.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	3.434274186952	3.08168847439964	2.80234990624702	3.07381984922057	3.08968043990068	3.13773999399863	-0.157352944773752	0.831600508619214	0.960478468368024
Merged-chr5-147073142-3	chr5	147072641	147073641	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	3431.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	5.54953925060077	5.5958677814868	5.68072236126	4.18744215085212	4.00938289189117	4.64914023252026	-3.14367557560879	4.25426799308173e-12	7.34417284581628e-10
Merged-chr15-101981144-2	chr15	101980644	101981644	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23198.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	7.02397227252393	7.26758052199311	7.3348806208025	7.07044559766132	6.85274361065099	7.21502680389201	-0.250186553344823	0.331597201616521	0.72297130356206
Merged-chr4-141958764-2	chr4	141958264	141959264	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24228.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	3.59656657841482	3.80989996583477	3.25985875453798	3.63224359358385	3.54249406809971	3.68367913784374	0.119998712956584	0.84509139064266	0.963760118842549
Merged-chr11-116031844-2	chr11	116031344	116032344	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	1528.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	7.03403328425961	6.72531639494276	6.58621105807463	6.8964447990856	6.83484482815802	6.97033291296282	0.14473606064045	0.588781005125529	0.876650937479947
Merged-chr3-16210761-4	chr3	16210255	16211255	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	27590.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	4.72250230366665	4.94171300407174	4.93364723226441	4.47717729001049	5.06570203358958	4.92761275065172	-0.031157531876037	0.941871265636199	0.987067319874248
Merged-chr7-128380724-2	chr7	128380224	128381224	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	37448.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.80784126924287	5.68423726636337	5.66350605055429	5.34879825946859	5.58057162897908	5.69917688928297	-0.326661994663588	0.316272344068469	0.710339942934364
Merged-chr11-75651329-7	chr11	75650839	75651839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-170.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	8.58195417380693	8.42618908602769	8.17333555790733	8.16819371487949	8.42480693679049	8.28725376751431	-0.154232369937651	0.498907130369782	0.83416518313324
Merged-chr14-122296647-3	chr14	122296137	122297137	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-62999.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	2.98121089959196	3.11044838608488	3.00543499692319	3.11803047264112	3.1145433220254	3.30751643458959	0.626643183408362	0.338872241340404	0.728846420178673
Merged-chr18-12648266-4	chr18	12647750	12648750	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	4717.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	3.11911535345905	2.89901986230551	3.05488041562043	3.62599415361608	3.28884022300375	3.53282520305513	1.95036756888091	0.00382456220257401	0.0502898501504075
Merged-chr4-138973235-1	chr4	138972735	138973735	+	1000.0	f0_balb.idr	5' UTR (NM_029857, exon 1 of 17)	5' UTR (NM_029857, exon 1 of 17)	330.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	8.65067466695361	8.954899373815	8.6294666971938	8.60566971411794	8.73071662268623	8.19654740248713	-0.302039155103343	0.21708358892128	0.610772864371554
Merged-chr8-120686732-2	chr8	120686232	120687232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18412.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	6.24451697098929	5.61943915871544	5.90043286126237	6.05088414424873	5.60484847208322	5.4691413144813	-0.386332385414016	0.298202206784904	0.694997737442112
Merged-chr1-191194269-4	chr1	191193763	191194763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10930.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	7.08889818443964	6.96782677808291	6.35756482712154	6.98525300982184	6.95599000871478	6.78574649225652	0.090253091969205	0.763450646198675	0.941793063578371
Merged-chr2-29668404-2	chr2	29667904	29668904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	48684.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.39002571280141	3.04022505789591	3.49306981993308	3.34334869746384	3.15423025218275	3.35056338247723	-0.139051007137731	0.830497195993849	0.960308134590845
Merged-chr16-91045738-2	chr16	91045238	91046238	+	984.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1359.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	3.60932233191705	3.39015880543182	3.78630427489772	3.2796051950284	3.45771801041309	3.44926783114213	-0.733232964975483	0.223894581792029	0.618583567117513
Merged-chr3-21985085-2	chr3	21984585	21985585	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-91567.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.85406951252648	3.85483283651065	3.76144993301932	3.79914178616414	3.99480273075299	4.33563408600598	0.686549507317964	0.196393855365034	0.584231205404807
Merged-chr11-69763681-1	chr11	69763181	69764181	+	790.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1837.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	2.59237949620602	2.44631441721622	2.66617680548455	2.88079654527844	2.63091866969321	2.98003571291497	1.46394297886078	0.0623067395938289	0.324350549807515
Merged-chr18-34118147-4	chr18	34117650	34118650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102834.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	5.98266099345631	5.72089724781233	5.50948018277639	6.29868885565598	6.72510045403474	6.04698672558382	1.08538813412361	0.00172527551383112	0.0275922167978197
Merged-chr15-73435062-4	chr15	73434576	73435576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11885.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	4.12237040498826	4.2496682067868	4.17317916804599	4.04980845130326	4.00510283162634	3.95026353215281	-0.518471010770366	0.279739168167024	0.677391790490708
Merged-chr5-44226616-4	chr5	44226085	44227085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	21.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	7.28604983697903	6.51189944644675	6.87247792278403	7.28535778746472	6.2971133632121	6.59544573586532	-0.202661252777363	0.586547866397362	0.875602825595287
Merged-chr4-135241873-4	chr4	135241374	135242374	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	30886.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.27398359651844	6.14888228185647	6.18074043500997	5.87912070866625	6.00922654890074	5.82355913757924	-0.496117716293506	0.0880484705604676	0.393677438925061
Merged-chr3-135192083-4	chr3	135191575	135192575	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20488.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	2.34398888012567	2.58404072861618	2.65078330258887	2.57120258520265	2.38562889386195	2.66327314553263	0.0622076341675005	0.939162389448381	1
Merged-chr3-104818596-4	chr3	104818095	104819095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008619)	promoter-TSS (NM_008619)	-32.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	7.19686266460142	7.07537961561767	6.98775682107743	7.29171534181891	7.42375787461328	6.96011187091814	0.235678190461933	0.361098555931684	0.747048449576418
Merged-chr2-169958927-4	chr2	169958426	169959426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	4261.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	5.4170620853396	5.2781015666502	5.22041331569515	5.20274688035614	5.14064816522583	5.46603993051101	-0.092843392298902	0.793644282780065	0.950531747588938
Merged-chr11-59811581-1	chr11	59811081	59812081	+	633.0	f0_balb.idr	intron (NR_045686, intron 1 of 1)	intron (NR_045686, intron 1 of 1)	1501.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	4.59182037987889	4.39345614660402	4.73323737037933	4.1834565288313	4.10109866635845	4.13179125729863	-1.15306505173076	0.0122723256954252	0.116040417780107
Merged-chr10-82859179-4	chr10	82858681	82859681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-25.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	9.02596484536476	9.15294405468261	8.61634786983511	8.83434763113945	9.22624253260995	8.60775659192726	-0.0470604732070011	0.858493742626383	0.966933063363181
Merged-chr12-16847453-4	chr12	16846948	16847948	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	36483.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	3.31182890740784	3.41673123381748	3.51533865705897	3.32945591219442	3.01415735772035	3.73175423012379	-0.1042782024783	0.876856436733836	0.971407825796496
Merged-chr9-95954787-4	chr9	95954273	95955273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011916)	promoter-TSS (NM_011916)	13.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	7.95738392897138	8.38941734851846	7.93709532001375	7.96595416926443	8.08019033924673	7.93026658016777	-0.172680961228259	0.473312959922476	0.82085565563512
Merged-chr2-31767295-2	chr2	31766795	31767795	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	(CTGTG)n|Simple_repeat|Simple_repeat	7122.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.64820151810722	4.98327324553083	5.34621508728733	4.94867809895354	4.76944244744166	5.17650842436386	-0.100157957406866	0.815321410496705	0.956370078970016
Merged-chr15-12236891-2	chr15	12236391	12237391	+	661.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172958, intron 5 of 15)	MTA_Mm|LTR|ERVL-MaLR	31863.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	2.98248468740912	2.87512563917577	2.96049036421432	2.87292276854255	2.81879800064057	2.91318424488216	-0.360517586168283	0.600940079145169	0.881855262262798
Merged-chr5-66107294-2	chr5	66106794	66107794	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-9115.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.7099178337015	6.59597258534979	6.57513307037326	6.65570765487766	6.5912616027919	6.7000945123271	0.0237311300412076	0.925973540888943	0.983305773102619
Merged-chr11-60831529-2	chr11	60831029	60832029	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	898.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	6.20093384400182	6.18256098756529	5.58978032579628	6.31443354337685	6.26280516891776	5.48951150747409	0.0926174185012512	0.811828805020299	0.955319632415911
Merged-chr12-84222823-4	chr12	84222341	84223341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3960.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.04972601167482	5.74569797642548	4.78183909090228	5.49426434974175	5.30316388342594	4.757889727599	-0.776343233366337	0.381197346702388	0.763036609598795
Merged-chr11-115412057-2	chr11	115411557	115412557	+	777.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347645, exon 6 of 6)	3' UTR (NM_001347645, exon 6 of 6)	7862.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	5.38651286719776	5.71321108123446	5.66344622156197	5.47390304815461	5.56203105446802	5.98307061712899	0.161791750827625	0.644513060140239	0.900242810676749
Merged-chr14-61557633-2	chr14	61557133	61558133	+	646.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-747.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	3.66993115381298	3.92539908066978	3.83450411510116	3.86221111229632	3.79246411968214	3.80208069276503	0.0130182700670126	0.980215335955657	0.995500659055379
Merged-chr2-59316723-3	chr2	59316228	59317228	+	898.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 9 of 20)	intron (NM_175464, intron 9 of 20)	69954.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	3.31902448160278	3.32817272471881	3.25990261798488	3.10659625381224	3.04000503502239	3.15778992953224	-0.887221546372606	0.161967725341144	0.535193761745733
Merged-chr18-65689073-2	chr18	65688567	65689567	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207255, exon 6 of 6)	3' UTR (NM_207255, exon 6 of 6)	-9201.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.2145456087012	4.36875344362431	4.06350945912192	4.2194187858593	4.33163870073478	4.03083208274135	-0.0547623072424393	0.909719567537779	0.979601081144038
Merged-chr19-34228618-1	chr19	34228118	34229118	+	679.0	f0_balb.idr	intron (NM_001360719, intron 3 of 10)	intron (NM_001360719, intron 3 of 10)	-4007.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.15439821508558	3.09481625878822	3.19500357484004	2.93758343526713	2.64079142950209	3.26631168159317	-0.798826181977649	0.293524024649278	0.690340231295885
Merged-chr10-42860276-4	chr10	42859755	42860755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172938)	promoter-TSS (NM_172938)	-257.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	3.99953582357823	3.942146205535	3.5626375673199	4.13556795263689	3.84815141631068	3.91694701939122	0.348108328121062	0.52812489964731	0.850412521768267
Merged-chr9-78532233-4	chr9	78531708	78532708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50484.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.24854685225931	8.28156965167153	8.01239105185873	8.13993386409032	8.40205552497978	7.90227480065014	-0.0248191065902774	0.918102673812531	0.981747877135909
Merged-chr7-19756392-2	chr7	19755892	19756892	+	632.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020486, exon 15 of 15)	3' UTR (NM_020486, exon 15 of 15)	-6819.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	2.59455320564073	2.6297244140712	2.83454394103804	2.74847410717945	2.67010568937917	3.02090106187844	0.680314346769686	0.366301614331298	0.751349029366431
Merged-chr2-27476670-2	chr2	27476170	27477170	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-997.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	3.53027992073401	3.46946089533075	3.95577633983532	3.60702482582502	3.44811375702016	3.93450154680006	0.0322575134436927	0.957361798447291	0.98996830630481
Merged-chr5-120586808-3	chr5	120586325	120587325	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 1 of 27)	intron (NM_145853, intron 1 of 27)	1788.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	2.61768460001726	2.7899945084249	2.62335980127809	2.72768300588861	2.70525658232665	2.88091149659868	0.464834905741708	0.532533133386382	1
Merged-chr6-50304498-2	chr6	50303998	50304998	+	702.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	PB1D10|SINE|Alu	-42729.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	6.69738491001422	7.02019994850388	7.00883126481974	6.89141037127705	7.40086378581087	7.15562081032697	0.390323002880099	0.157610012076258	0.529063009716043
Merged-chr10-40090557-2	chr10	40090057	40091057	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	RMER19B|LTR|ERVK	51697.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.24441861510522	3.39405298629622	3.27384098481899	3.29959301135797	3.0741350750207	3.45484450633966	-0.12065356314252	0.84925214883218	0.964611884188925
Merged-chr9-119247125-2	chr9	119246625	119247625	+	612.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045693, exon 14 of 19)	non-coding (NR_045693, exon 14 of 19)	-15433.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	4.37329978174202	4.34306534468445	4.83586040492433	4.03806810993588	4.1612519493754	4.42636080233498	-0.823204422824203	0.0910478220373409	0.401574986117974
Merged-chr9-103364922-4	chr9	103364432	103365432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	47.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	8.40766246498622	8.26243853875257	8.09227541899725	8.43456309119475	7.96719291779255	7.98473015048729	-0.160325865228817	0.515595342926279	0.843789971170832
Merged-chr3-8920394-2	chr3	8919894	8920894	+	607.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	3463.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	2.13003322592624	2.13513065954274	2.34256444479836	2.06991552495263	2.09707840354853	2.29066836285304	-0.357479041916347	0.688750652850462	1
Merged-chr1-152802419-2	chr1	152801919	152802919	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	RLTR17D_Mm|LTR|ERVK	2266.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	3.84375979032107	3.67507081679104	3.85305397401335	3.9457688619035	3.74959704198895	3.97064643929514	0.306254599873915	0.558376259556261	0.864644955334959
Merged-chr3-54276148-1	chr3	54275648	54276648	+	559.0	f1_c57bl6.idr	intron (NM_001253682, intron 4 of 11)	MTA_Mm|LTR|ERVL-MaLR	-84959.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	3.25572175885749	3.44707568868446	3.35606960739142	3.33662035664219	3.19678445597245	3.78047561517414	0.368656676736495	0.565297304320717	0.866599059240356
Merged-chr2-116952913-4	chr2	116952414	116953414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	52762.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.09896779493094	3.93375278909613	3.95873489072742	3.97949587747637	3.77961826493262	4.16711547595125	-0.0792394524724847	0.87689296805399	0.971435362612654
Merged-chr5-141054594-2	chr5	141054094	141055094	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53998.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	2.90490624247736	3.01051339560499	2.98738481482311	3.08434321222655	2.78029604956557	3.28487452411203	0.416566385162827	0.557238032797422	0.864114619124975
Merged-chr2-91183307-4	chr2	91182811	91183811	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-264.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	6.08096173059313	5.83575449968954	6.02870181487199	5.7620852370051	5.61743248307863	6.06765231723318	-0.297759047949552	0.352488499570766	0.740185818858909
Merged-chr10-98676945-3	chr10	98676415	98677415	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	2.89847504841848	3.28250527655776	3.20945357387448	3.01125993217176	3.20401077088925	3.22456713660331	0.0386831475809698	0.954557175467647	0.989606357454991
Merged-chr2-113453679-4	chr2	113453136	113454136	+	917.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	12572.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.53473596172611	5.01025888811808	4.77206468583999	4.80146155952658	4.87729157624024	4.546933886268	-0.0738212579715827	0.863594150203362	0.968269312109804
Merged-chr17-17394500-4	chr17	17394009	17395009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8177.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	6.25226253137304	5.81390801094291	5.52300325405667	5.8154442988101	5.91423365913642	5.89211655219068	-0.0654585383082507	0.850095072176543	0.964801567373977
Merged-chr2-181319745-4	chr2	181319255	181320255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166665)	promoter-TSS (NM_001166665)	31.0	NM_001001882	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	5.87442422728393	5.83140227139174	6.03357655026146	6.00497091337606	6.08590736914049	5.90918527805967	0.175189839332976	0.554495875152912	0.862826181827127
Merged-chr4-41304520-3	chr4	41304026	41305026	+	935.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	10375.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	4.46195784472978	4.6129649064902	4.70973060352242	4.36005087725646	4.19218126472841	4.54518046835906	-0.587969900381776	0.185654832932397	0.569911016727934
Merged-chr3-130059781-2	chr3	130059281	130060281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	1126.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	6.39149721111099	6.1306591900007	6.19023135923315	6.38673898090726	6.38905230820773	6.64956286368273	0.37506725472272	0.185992322787064	0.570440442110802
Merged-chr4-141860700-4	chr4	141860208	141861208	+	759.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 2 of 3)	intron (NM_025994, intron 2 of 3)	14212.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.1957840098622	3.84369575823287	4.5158231209507	4.17743252286672	4.01487962463894	4.08706490239066	-0.317033373399449	0.545337682331914	0.858059274547204
Merged-chr17-26530548-1	chr17	26530048	26531048	+	587.0	f1_c57bl6.idr	Intergenic	Intergenic	-22076.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.23688678836288	3.85128548249829	4.14486295961621	3.97297139742486	3.76339139884565	3.59231375521561	-0.907306094032862	0.0984577622304801	0.41841029007527
Merged-chr12-41024022-4	chr12	41023548	41024548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053122)	promoter-TSS (NM_053122)	-42.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	6.65237463337086	6.6932296185301	6.65923206971299	6.48200267719091	6.56365506467072	6.56824529444687	-0.208152920373945	0.413744844507878	0.785359020041643
Merged-chr9-99212859-4	chr9	99212332	99213332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	24407.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	5.15636895510638	4.94928302834904	5.08925027872143	4.96530298111629	5.04034557079191	5.11983958614926	-0.0550821486342062	0.881012454184964	0.97262624933271
Merged-chr7-48750043-4	chr7	48749461	48750461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39042.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	4.01263914488468	3.91504369489069	4.04054422295837	4.27119540621261	4.08208690535694	4.29147292490339	0.646564849302523	0.178990722891998	0.560346893050806
Merged-chr10-89453259-1	chr10	89452759	89453759	+	792.333313	f0_balb.idr	TTS (NM_001163504)	TTS (NM_001163504)	-9292.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	4.14601961076069	4.06080843551735	4.01628622750303	3.79947060899727	3.63182747119933	3.93989955646168	-0.910009288474427	0.0780382604091184	0.368845675182172
Merged-chr8-121109450-2	chr8	121108950	121109950	+	782.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1071.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	3.63099904004757	3.45884001823231	3.82147085487435	3.60401053600807	3.28008760335829	3.79527994974355	-0.246731453888183	0.684257839894508	0.915825160524325
Merged-chr18-60559499-2	chr18	60558999	60559999	+	792.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357462)	TTS (NM_001357462)	-1287.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	2.37428052678278	2.37753713484893	2.71972587029825	2.42601804628678	2.33645055505471	2.61498562667012	-0.210527353678811	0.799991329288097	1
Merged-chr6-106458879-1	chr6	106458379	106459379	+	814.666687	f0_balb.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	290158.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.36749511937081	3.66185125735997	3.73272338192871	3.26830879757593	3.10412122226843	3.39104318640339	-1.33577466231276	0.0341157587287797	0.225957498392446
Merged-chr16-92021819-4	chr16	92021336	92022336	+	994.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-36486.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	6.09565630031951	6.15907837941386	6.08059611971295	6.59961165230936	6.69906729838952	5.91856531894145	0.579497668189634	0.0767831232381455	0.365125735421169
Merged-chr2-180257289-4	chr2	180256789	180257789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-90.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	6.86458269303632	7.1465386223283	7.15369521660755	6.95254430789722	7.22343570135793	6.9649647962276	0.00202030071979686	0.993746119156423	0.998777772262979
Merged-chr12-4238083-2	chr12	4237583	4238583	+	659.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	4056.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	4.28251089534765	4.01650418129736	4.0999992462643	4.25207888268262	3.98319864106486	4.07209711699454	-0.0981250315970711	0.84093664441343	0.962832831784718
Merged-chr8-83164829-1	chr8	83164329	83165329	+	767.0	f1_c57bl6.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	-523.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.34265156786365	6.2846570550411	5.97478716097471	5.88828484251921	6.09336125415631	5.86085665827662	-0.443716221939745	0.144353551347481	0.507146496154939
Merged-chr8-90829703-3	chr8	90829266	90830266	+	884.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	931.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.83976545927429	4.8139415217891	4.95920086601114	5.40192948256015	5.19108655836598	5.22912890735158	0.866650777115206	0.0179592821764546	0.150534496961664
Merged-chr7-126655903-4	chr7	126655399	126656399	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	6590.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	5.0415419158417	5.09709339595367	5.16264017112178	5.05043324945165	4.99044649642119	5.40550291509344	0.104912278431831	0.779320177822417	0.945710994231145
Merged-chr8-117285236-4	chr8	117284732	117285732	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	28213.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.47595233011131	4.63611232701434	4.42859198762578	4.58238184705283	4.24497811601274	4.45259884645292	-0.234548180766698	0.597022858167898	0.88011264230803
Merged-chr4-129791200-3	chr4	129790692	129791692	+	952.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29287.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.84683288718054	4.94028780036137	4.89706298850404	4.69207209595354	4.71711982835377	4.9616744062293	-0.245804400109737	0.529771901993279	0.851048470960073
Merged-chr8-61607750-4	chr8	61607205	61608205	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-16536.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.1390966039855	6.56288248377242	6.51087353055161	6.17235183960664	6.42606243948399	6.5699128567869	-0.0322897723886301	0.91429391167988	0.980912729144991
Merged-chr10-67043364-4	chr10	67042832	67043832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	38257.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.43971683146885	5.27681053742718	5.35952761027148	5.31340503575146	5.2279831452324	4.93770454592819	-0.361986242060377	0.315564473019976	0.709834518424648
Merged-chr10-60260774-4	chr10	60260262	60261262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16866.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	8.04217384346462	7.97868989677417	7.90917995327082	8.19411967682766	8.34687996078242	7.84980222271079	0.248163318837305	0.292680416197163	0.689883481862591
Merged-chr3-145938522-3	chr3	145938018	145939018	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025555, intron 1 of 2)	CpG	504.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	7.32671893610893	7.24432497970477	7.00479386776838	7.26894616028919	6.80550119160769	7.11576790373963	-0.199049821655507	0.456255965531695	0.811500468034179
Merged-chr19-37957395-4	chr19	37956883	37957883	+	934.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 21 of 53)	L1MC4|LINE|L1	86194.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.63234556594993	5.6360220491821	6.22684712561214	5.52876181536569	5.8107997156394	5.40647527244061	-0.449372612557749	0.222676814945371	0.617620026273531
Merged-chr9-35280075-2	chr9	35279575	35280575	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	2.85656624384858	2.94795950131609	2.80059899067266	2.96318140810062	2.64324304590109	2.93601025906101	-0.103338140320785	0.887601797125303	0.973836995667151
Merged-chr3-9751670-4	chr3	9751168	9752168	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	82011.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.67015387234915	5.70830338206884	5.41416736674109	5.24472827767601	5.35207611848755	5.10639766484863	-0.704732666919158	0.0421595459140271	0.257095617096123
Merged-chr15-66729110-4	chr15	66728607	66729607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 26 of 47)	intron (NM_009375, intron 26 of 47)	58337.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	6.47106906764681	6.26246737117057	6.65807183053404	6.44164000642171	6.43597502429648	6.18556790265356	-0.159338258002	0.579170625146644	0.872437416842052
Merged-chr8-122928979-4	chr8	122928480	122929480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	80606.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.87969804359997	5.51359258787077	5.18466377927341	5.45920492216487	5.36857341722088	5.44888458531937	-0.279555240122868	0.448248173118354	0.807155185977451
Merged-chr3-40523491-4	chr3	40522982	40523982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-570.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	4.50074651250202	4.79223255441167	4.28743141773752	4.92803545209718	4.98698487144879	4.68272080074956	0.744522284031933	0.0925551663442256	0.405215908567243
Merged-chr15-75616488-4	chr15	75615923	75616923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011759)	promoter-TSS (NM_011759)	-261.0	NM_001044718	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	4.60028293842187	4.69849108120066	4.56726146790978	4.49680719870827	4.54926386271829	4.41756266788626	-0.32387734065278	0.440090160198494	0.801567033070239
Merged-chr4-131921192-3	chr4	131920678	131921678	+	992.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-593.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	6.23276394048486	6.22597034490878	6.39337904329543	5.5473849029412	5.45220334259667	5.46057581049046	-1.41265746307122	3.46978618829459e-06	0.000160664423570182
Merged-chr12-85467148-4	chr12	85466664	85467664	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.46446049179996	3.99728244568266	4.07815203860837	4.09902950075342	3.75472530860778	3.72287612800754	-0.965764311826102	0.0754798534549741	0.361732220616754
Merged-chr9-123539289-4	chr9	123538772	123539772	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	9519.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	4.12180361215076	4.04856785557034	4.26840958375347	4.87441829694623	4.95879482358376	4.83762607085441	1.90801778683791	1.1069033319411e-05	0.000436508115849078
Merged-chr5-92348941-4	chr5	92348402	92349402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-13.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	6.70880394278348	6.64934628038498	6.172973250395	6.81585248007201	7.21799157013374	6.56657649650521	0.569050683409291	0.0742285698575499	0.358343631974183
Merged-chr16-30972103-4	chr16	30971627	30972627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	109305.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.26835265198355	4.94351167746551	5.09248614953805	5.37863656447859	5.35392417996527	5.82465994441254	0.825769330355026	0.0281226143651714	0.200544631601821
Merged-chr5-135613053-4	chr5	135612541	135613541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19613.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	5.80400499268469	5.6120480848488	5.82181906585853	5.37357415601841	4.97594653439987	4.93884386495531	-1.22955351955173	0.000706118474570285	0.013759884316638
Merged-chr5-136087038-4	chr5	136086487	136087487	+	842.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	PB1D7|SINE|Alu	3071.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	6.14818395206356	6.15241846905577	6.05969750743963	6.59496898835817	6.72746808356256	6.54257857281143	0.825838980927885	0.00223353378422634	0.0335950613011397
Merged-chr10-19063572-4	chr10	19063086	19064086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-48176.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.26409811163155	8.38837970456753	7.8941042498877	8.37712941188701	8.6961620244515	8.27230923746681	0.364373384590317	0.145903970267099	0.509308115869646
Merged-chr6-113649188-2	chr6	113648688	113649688	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	10721.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.13622632157322	5.04440919318855	5.32175628058451	5.27802353107247	4.96960866402822	5.38442051462208	0.0950813304117906	0.799629762244151	0.952263864378888
Merged-chr1-159232206-4	chr1	159231706	159232706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	6.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	7.07965556062606	7.16096962034287	7.23503194185611	7.27727253741415	7.2080784013207	7.32620122188433	0.166980449835335	0.472561638282361	0.820550293768681
Merged-chr8-83737525-3	chr8	83736985	83737985	+	699.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	3826.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	6.83837007183337	6.83231596644419	7.02452197575894	7.27498456915052	7.51322849290205	7.38827943707003	0.758927719909641	0.00168297978325508	0.0270394635653772
Merged-chr6-136835648-3	chr6	136835181	136836181	+	773.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039558)	promoter-TSS (NM_001039558)	-231.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	3.93266328982361	4.21304225897136	3.93561455349179	3.20921277284426	3.09655851229524	3.35261978123609	-3.41186478842398	9.03853462427174e-07	4.96421378888715e-05
Merged-chr14-62244599-2	chr14	62244099	62245099	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48380.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.94818266345728	5.74196423989191	6.28986119924306	5.75444339359882	5.91440312937734	6.11796305463677	-0.121537859117226	0.712272476260532	0.925002625244824
Merged-chr15-101112360-1	chr15	101111860	101112860	+	687.0	f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-3395.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	3.29309122414477	3.09833951313999	3.14442174124225	3.10576570380617	3.18438491911598	3.38398109839232	0.176052094300225	0.783751409591603	0.947284320139836
Merged-chr1-7397055-4	chr1	7396567	7397567	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	308147.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	6.3322569111151	5.89090492551811	6.31561902655075	6.7748322632659	6.83172970958022	6.59496365377853	0.895607530922923	0.00208206067635693	0.0318815062124231
Merged-chr17-25474721-4	chr17	25474165	25475165	+	784.841675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027951, exon 4 of 6)	exon (NM_027951, exon 4 of 6)	3075.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	2.22614156941909	2.27919528146537	2.38747714299852	2.05791416776112	1.95620756738744	2.06866175278414	-2.25535083871147	0.0225861099992638	1
Merged-chr9-118811443-2	chr9	118810943	118811943	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	99751.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.76508175219522	3.6865030187797	3.53830818322894	3.22501847577511	3.15208724466009	3.55571590000194	-1.37016141027585	0.0277975598174567	0.199000202812608
Merged-chr13-22041365-4	chr13	22040873	22041873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175656)	promoter-TSS (NM_175656)	-11.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	6.53969702258835	6.77496976967798	6.98235310897367	6.88971903991616	7.18843235498874	7.15280896563401	0.483299384239091	0.0730887711163245	0.355275032127527
Merged-chr11-116626566-4	chr11	116626057	116627057	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	462.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.58936729567735	6.12446845808121	6.39272212861316	6.7038030790802	6.71624687279347	5.93222188206892	0.20674450354462	0.548447666269495	0.859744412489679
Merged-chr11-115142693-2	chr11	115142193	115143193	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8701.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	4.82212574975303	4.23922038325575	4.51416076169248	4.54224098338676	4.40110267204145	4.70042394294907	-0.00989585569203888	0.982984688210511	0.996200895077944
Merged-chr12-111592646-4	chr12	111592130	111593130	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022801, exon 2 of 16)	exon (NM_022801, exon 2 of 16)	18120.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	4.71573433772139	4.6574516562333	4.89083641729682	4.74081577946493	4.96265195379481	5.02405194214368	0.367265532060926	0.35373870516601	0.740929143625235
Merged-chr3-82799897-3	chr3	82799408	82800408	+	830.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76575.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	3.42923080792763	3.38935722570693	3.35215272396888	3.19686281736768	3.29120429006586	3.2518123856106	-0.576444379481357	0.343363660635862	0.732260385836655
Merged-chr4-155162901-4	chr4	155162369	155163369	+	976.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59666.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.79575207611341	5.69230981534827	5.61943515943767	5.5787447513079	5.47498980617392	5.73464416489416	-0.219395723823713	0.493246476808154	0.831208279358962
Merged-chr10-117376501-4	chr10	117375992	117376992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	CpG	481.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	8.71243690303565	8.58089973005035	8.36824814001811	8.62149440727211	8.33056340136989	8.47541593978626	-0.118968688873476	0.592089964359525	0.877911218404565
Merged-chr1-139007709-4	chr1	139007217	139008217	+	743.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30060.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.91797931509055	4.62642284946799	4.70405449464762	4.69754224136932	4.42709148205725	4.88120935525775	-0.205996576745905	0.630884906716515	0.894935857795011
Merged-chr4-139198240-4	chr4	139197742	139198742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4131.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.66491188047294	7.65007785668867	7.53605250628225	7.57675803497703	7.99912695933213	7.71541556735784	0.233182750412217	0.329457002619654	0.721399184090983
Merged-chr4-126436581-2	chr4	126436081	126437081	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-7039.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	3.53887842671077	3.01137958705645	3.5220416988499	3.46913125172043	3.45790475013622	3.79037872897572	0.721001757150429	0.278056295916393	0.675380455691135
Merged-chr19-6364528-4	chr19	6363991	6364991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 1 of 11)	CpG	801.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	9.0051429384837	9.09850260310866	8.76782059539149	8.73760354534611	8.84578807702692	8.6650423614693	-0.294051932479024	0.162248491838932	0.535665298136487
Merged-chr2-39009703-2	chr2	39009203	39010203	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	1564.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	3.45965594936209	3.53628842402351	3.45156548472797	3.52401478839322	3.5886289223003	4.0149054800112	0.812155924572586	0.167016009117401	0.542621064645689
Merged-chr10-96328662-4	chr10	96328149	96329149	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	102442.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.95043256326457	4.03836440171859	3.76199793632927	4.1256553761892	4.03980488728643	3.66124003766454	0.112372842111632	0.835975295895135	0.961873866737315
Merged-chr10-117841124-3	chr10	117840629	117841629	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	4845.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.12247775691028	6.86129581513475	6.84009172561896	7.20935919904331	7.33547116615043	6.82066667615064	0.301701019791242	0.269145800723453	0.66629407200667
Merged-chr4-63402522-8	chr4	63401975	63402975	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	970.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	8.06307862858256	7.84050882653646	7.92628119154675	8.20675059080796	8.17671643094061	8.13505652681672	0.320933732401128	0.130354151705553	0.482560431744706
Merged-chr2-129130417-2	chr2	129129917	129130917	+	772.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_025395, exon 3 of 4)	exon (NM_025395, exon 3 of 4)	717.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	5.47569532580432	5.41606123672826	5.93185631529544	4.84583316376663	5.25014841018613	5.22002778285754	-0.977968121305703	0.0116319462957468	0.111866734555767
Merged-chr12-85111482-4	chr12	85110997	85111997	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 1 of 14)	intron (NM_030225, intron 1 of 14)	664.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	8.12316078476522	8.37811162598809	8.12268631333301	7.89267820598985	8.19636029154566	8.09557900803111	-0.207078261016176	0.361237946242914	0.747169629644794
Merged-chr12-85386717-2	chr12	85386217	85387217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12000.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.53444283501706	6.39797034521785	6.65038418618396	6.09578220795088	6.23204261428596	6.64719538654231	-0.311120325244374	0.298017632216247	0.694781629583073
Merged-chr5-65492957-4	chr5	65492446	65493446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-111.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	8.73058554173198	8.54571812319185	8.19572071393677	8.30056473009206	8.37424001538511	8.23799515965092	-0.290493321699424	0.214645625511339	0.607821712753455
Merged-chr17-26534904-4	chr17	26534385	26535385	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.92724455989013	9.1625918856408	8.89032479774864	8.84632474299913	9.25671969883655	8.81411911810613	-0.00966944824238671	0.9667314131237	0.992349609766636
Merged-chr2-152821209-1	chr2	152820709	152821709	+	588.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	7280.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	3.19067213041507	3.21107785889949	3.2092361853968	3.05551466453057	2.87825746099548	3.28045664430771	-0.572668784629884	0.392893084251737	0.771377884930667
Merged-chr5-121711063-4	chr5	121710562	121711562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	-547.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	7.65473576922941	7.28988581598355	7.22832476484083	7.79649120354305	7.54511350780153	7.24840640727568	0.213343447154237	0.434734540484633	0.798632090721892
Merged-chr2-155135925-4	chr2	155135395	155136395	+	842.4583130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	URR1B|DNA|hAT-Charlie	2414.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	6.54002039400729	6.2713237159742	6.71527019460857	7.12573597561648	7.12783249469064	6.69358258386924	0.770710622500074	0.00715677048275707	0.0794318471827731
Merged-chr11-101253770-4	chr11	101253282	101254282	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284414)	promoter-TSS (NM_001284414)	75.0	NM_026776	28084.0	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	6.25642741455491	6.36907618857341	6.52006203447845	6.65752414632661	6.6216360913512	6.33756182344886	0.284029229620774	0.306293653520334	0.702482974700109
Merged-chr11-115743117-4	chr11	115742613	115743613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	4.70336924389433	4.89520777927382	5.01128275907676	5.17396544238812	4.94955221832455	4.7782107235518	0.247679810322728	0.533062795221539	0.852163094424473
Merged-chr15-99395156-1	chr15	99394656	99395656	+	642.0	f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1937.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	6.79481709572202	6.6254145162414	6.59820429043764	6.58923275369646	6.59154454203132	6.72223096379627	-0.0762870793855588	0.767843284003019	0.94270730875714
Merged-chr3-116081978-4	chr3	116081514	116082514	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	47674.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.98319568816359	4.84969604888893	4.60470595218165	5.07711212532538	5.18472037126184	4.62874050300656	0.365555857753977	0.389762295125398	0.769299073766969
Merged-chr15-50887379-2	chr15	50886879	50887879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	1670.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.26353429402685	6.05772514475679	6.18911609794797	6.30427057552395	6.40983775604831	6.02553094534987	0.162064648988454	0.58053082956828	0.872884157869997
Merged-chr6-38874589-2	chr6	38874089	38875089	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	1601.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.96926491685454	6.96444564898938	6.71278153635159	7.00814226881846	7.1696160610186	6.85116163736798	0.198102610545815	0.442660454685584	0.803309923833629
Merged-chr9-120572915-2	chr9	120572415	120573415	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025974, intron 3 of 5)	intron (NM_025974, intron 3 of 5)	1398.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	3.62703802968459	3.63949207438607	3.90221411210101	3.64614349694631	3.6242587353806	3.82828751393749	-0.081284216467219	0.882045864494597	0.973002238292341
Merged-chr7-127008356-4	chr7	127007847	127008847	+	956.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6247.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	7.53458687739446	7.55108174257255	7.26667721562827	6.96408935647089	7.20913913369831	6.91483692163168	-0.623498896148869	0.0130018407635254	0.120907931823738
Merged-chr15-59615871-4	chr15	59615537	59616537	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32617.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.33664418350897	6.20292297707166	6.5453602444191	5.75368856904854	6.11058292886089	6.08012987410515	-0.621368145541099	0.0415862056684774	0.255041194181252
Merged-chr6-124445676-3	chr6	124445174	124446174	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	17070.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	3.05394957384648	3.12359751848752	3.33567675810068	3.20135345633106	3.00667029928448	3.24320679513596	-0.0916480425838479	0.888392226269097	0.97401529899353
Merged-chr6-47454560-5	chr6	47454093	47455093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355550)	promoter-TSS (NM_001355550)	-164.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	8.63932644675904	8.61518498046194	8.40579104689378	8.46245123321492	8.04390968296903	8.40407714193151	-0.34456890801645	0.135072668935323	0.491223853222672
Merged-chr16-35982508-6	chr16	35981891	35982891	+	857.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-972.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	5.4587792151909	5.75343177541996	5.00165030350905	5.37818660597856	5.32175214194935	5.18185606046955	-0.303972832259758	0.43476153510996	0.798632090721892
Merged-chr7-24441998-4	chr7	24441483	24442483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3699.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	4.50375786370631	4.34104514991297	4.5352906055129	4.19585584392251	4.01136426084985	4.01724378381187	-1.04283749801013	0.0259002844474128	0.190785310578995
Merged-chr8-33928433-4	chr8	33927958	33928958	+	909.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	1405.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	3.92783069389063	3.9677540304757	4.05732414723111	4.63769810741733	4.65930206926773	4.41220520116576	1.63620383203174	0.000416515626919887	0.00908451698158583
Merged-chr10-75838177-3	chr10	75837694	75838694	+	860.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3313.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	6.31103020529581	6.12354353632335	6.4390153090166	6.19593095221068	6.08187776048023	5.96509833074899	-0.339598900105114	0.243916004909855	0.641053788267188
Merged-chr8-13666116-3	chr8	13665619	13666619	+	969.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	11468.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.20445496997807	5.00801996697314	4.78983996517842	4.59463222361315	4.32184507068019	4.42673259399808	-1.33995795978641	0.00158140805499356	0.0257456077949334
Merged-chr5-117116130-4	chr5	117115593	117116593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178622)	promoter-TSS (NM_178622)	-100.0	NM_178622	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	7.54218514344895	7.37851423019113	7.54346457829216	7.54794497812198	7.24382601803041	7.11891581867691	-0.247305820824328	0.319331718738964	0.713371644772242
Merged-chr2-10078584-2	chr2	10078084	10079084	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020615, intron 1 of 9)	intron (NM_020615, intron 1 of 9)	1926.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	3.22665735855804	3.06388662918677	3.16301505946108	3.19291997929187	3.27167899710241	2.99137220418669	0.0504941357459562	0.938873612362796	0.986550175078409
Merged-chr19-28680044-5	chr19	28679528	28680528	+	984.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305671)	promoter-TSS (NM_001305671)	49.0	NM_001305671	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	3.50285958846173	3.40990314091562	3.40173225035458	2.9379105589954	3.13949459259276	3.47227423346482	-0.983560550320611	0.144152986544319	0.506853230694261
Merged-chr5-24908310-4	chr5	24907815	24908815	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310480, intron 3 of 13)	CpG	194.0	NM_001170556	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.46817699800937	3.48574819963818	3.31284235862044	3.32206398385342	3.00574063977026	3.01485552345857	-1.26981572772417	0.0562374600897314	0.305626432096571
Merged-chr11-94353492-2	chr11	94352992	94353992	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	intron (NM_029600, intron 26 of 30)	25491.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	3.05526922728621	3.23092777633329	3.6341777284183	3.33074193045885	2.74028335689542	3.65627856584457	-0.0561465264701936	0.96511839426885	0.99178188919888
Merged-chr15-53235450-1	chr15	53234950	53235950	+	894.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	110733.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.47331004564358	3.58471896595244	3.34231800049825	3.28236063278469	3.16408707666082	3.41412527854062	-0.754532354656773	0.218636500114659	0.612741862631882
Merged-chr9-118853471-2	chr9	118852971	118853971	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-73065.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.69137999943485	2.7907209075779	2.78208898865798	2.78654471953037	2.41618005016645	2.66841036646449	-0.683451896907241	0.386957439204925	1
Merged-chr7-28381189-4	chr7	28380712	28381712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	8.55842885583657	8.57706568181681	8.01982224830575	8.40323037664363	8.84329087240669	8.04423852148867	0.0906350798071441	0.756776482327155	0.939700773811652
Merged-chr6-38892251-4	chr6	38891748	38892748	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16058.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.47504796649228	3.46207454458125	3.51096790509832	3.29386689591917	3.33855799479453	3.63200702792819	-0.224153407011316	0.705827800278165	0.922834459892351
Merged-chr1-65179231-4	chr1	65178736	65179736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-94.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	7.28344390418098	7.27644356145526	7.21849352038946	7.40032566228412	7.72951599556302	7.29980108448362	0.352226068534092	0.154506801220896	0.523836159179075
Merged-chr11-102297129-4	chr11	102296626	102297626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098837)	promoter-TSS (NM_001098837)	-497.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	6.83665588103182	6.70853368201561	6.77504870683232	7.16465682788957	6.71204674459914	6.96386785500517	0.281346774751491	0.29226792562145	0.68951252554772
Merged-chr5-114697113-3	chr5	114696613	114697613	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6178.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	5.84960775953051	5.73251701635707	5.90709344176077	4.32009238378642	4.19595351059354	4.64568265811433	-3.27714778684377	5.13730322511982e-15	1.41544611508533e-12
Merged-chr5-100872168-4	chr5	100871671	100872671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	25942.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	2.34474259272064	2.50011800456282	2.43061489607351	2.74057199258584	2.71369717281284	2.76365540156556	1.87774262657955	0.0219133390275812	1
Merged-chr4-128806892-4	chr4	128806465	128807465	+	938.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-853.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	6.28300045201607	5.97450159081586	6.42566311823929	6.30617059317591	5.86220067400122	6.072282921427	-0.244038538367988	0.442776956926464	0.803335768870463
Merged-chr17-47499170-4	chr17	47498645	47499645	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 2 of 7)	RMER6A|LTR|ERVK	3146.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	3.74860068743044	3.62890282952938	4.05065843071452	3.58105750875856	3.54891808842099	3.84609020070421	-0.514523134204873	0.362077290445755	0.747675323428227
Merged-chr7-67230362-2	chr7	67229862	67230862	+	642.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291191)	TTS (NM_001291191)	7746.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.22196721382894	3.0484757388408	3.32973072711071	3.16170113884531	3.09953918353699	3.45227766666428	0.16145923190917	0.803971124675015	0.953557286986578
Merged-chr16-55967368-2	chr16	55966868	55967868	+	721.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	intron (NM_024218, intron 3 of 5)	1093.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	5.88343462025691	6.09375793673256	5.8949368833073	5.93044284287942	6.08467029597748	5.83043377293388	-0.00613840621942672	0.9838345459278	0.996443902142547
Merged-chr8-25040614-4	chr8	25040117	25041117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-1655.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.74274337532925	5.84242324340499	5.91183023731129	5.84588235132468	6.33636895518975	5.94934711125298	0.426397137250643	0.183066298667639	0.566085379224821
Merged-chr13-107762479-2	chr13	107761979	107762979	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75082.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	4.38936551642604	4.15643942071566	4.65173001282473	4.53459574950486	4.35149299142062	4.25914004079202	-0.0388204764611711	0.934011243555934	0.985696081600636
Merged-chr10-63223273-4	chr10	63222771	63223771	+	934.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19319.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	3.29613208116492	3.15634756382653	3.28867695181742	3.20705130619414	2.87063093418519	3.19085352941947	-0.667219550958982	0.31941343069756	0.713439259696738
Merged-chr11-109380852-4	chr11	109380341	109381341	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359034)	TTS (NM_001359034)	-17187.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	4.94349209663749	4.69624406361878	4.67619550584851	4.4026579461627	4.54647324350832	4.35068773968582	-0.814369427932584	0.0578188439374094	0.310747343130342
Merged-chr2-132285912-3	chr2	132285422	132286422	+	783.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291039)	promoter-TSS (NM_001291039)	-17.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	4.23381308879941	3.88354407124241	4.56661686570852	3.90633549619778	3.88537228571093	4.10688085275775	-0.810199216337475	0.127445440693607	0.477202010311607
Merged-chr11-116647945-3	chr11	116647450	116648450	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	6363.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	5.01027540361448	4.95523264176214	5.12687000560456	4.60450313459817	4.36843655081959	4.38618250840314	-1.33863754465783	0.00119990345880786	0.020752768031695
Merged-chr4-55327724-3	chr4	55327214	55328214	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22328.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	2.64970867276011	2.79660721743209	2.84665063981339	2.56742122624572	2.87951750417401	2.85954296145137	0.066092829940754	0.930190304082465	0.984448052988905
Merged-chr6-120174448-6	chr6	120173942	120174942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-19381.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	7.96779616695021	7.95239994880985	7.75435541055844	7.44698505534579	7.59765244776855	7.59219992891988	-0.507891760243947	0.0227203704860132	0.175760126065974
Merged-chr5-24053523-2	chr5	24053021	24054021	+	630.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22831.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.83957227145758	3.32320502581759	3.45776466468722	3.67706293350185	3.77440804654349	3.53085440371825	0.355034200506123	0.560111315201573	0.865168135946323
Merged-chr12-32774889-4	chr12	32774406	32775406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-45429.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.88108509378757	5.56690969053832	5.10985958628332	5.75140652969726	5.88792245929036	5.52383143772357	0.302794557835883	0.425683495966069	0.793287174296633
Merged-chr13-56593393-4	chr13	56592906	56593906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16180.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.0592418436212	5.04664771075744	5.2333763274919	5.13244748609963	5.14228267696507	5.55058015406185	0.344779118285098	0.354392192151683	0.741552937201367
Merged-chr3-144676661-4	chr3	144676219	144677219	+	725.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43616.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	3.01251087301162	3.05325604118847	3.66258849636569	3.45168989453147	3.50629387029355	3.95686569886953	1.39855065810874	0.0482506766137132	0.278479732237903
Merged-chr17-66101579-4	chr17	66101060	66102060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278415)	promoter-TSS (NM_001278415)	-1.0	NM_028388	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	7.6890890747939	8.175179539668	7.58457403554375	7.85771738462808	7.87694459946497	7.66068847194527	-0.0659079378809882	0.801087043322652	0.952752818604963
Merged-chr13-117036503-4	chr13	117036007	117037007	+	951.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10991.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.66051444970753	4.54856229074232	4.93306168846686	4.70956286175772	4.59936476204904	4.9293599784072	0.0704763971139714	0.866832949316118	0.969114221403526
Merged-chr13-94162681-4	chr13	94162175	94163175	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	MTD|LTR|ERVL-MaLR	104879.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.13105538928606	4.6457556677306	4.68771116688138	4.51201968345178	4.57464196260321	4.54490211479739	-0.708934921172888	0.101123264765272	0.424096713049379
Merged-chr1-136124454-4	chr1	136123942	136124942	+	944.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6741.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	4.41934175246408	4.39984016907232	4.93157435525348	4.89421547909975	4.81006091266072	4.58285610555645	0.423681968723156	0.341504257413157	0.730861271883589
Merged-chr18-20717112-3	chr18	20716610	20717610	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	MER5A|DNA|hAT-Charlie	29294.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	4.02314261017359	3.96688883054787	3.94812521770264	3.78891557397022	4.0826957300055	4.01712628109233	-0.026062244074351	0.95880161864665	0.990162613547306
Merged-chr7-30414807-5	chr7	30414286	30415286	+	920.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 3 of 4)	intron (NM_011662, intron 3 of 4)	998.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	6.93686949940654	6.94386064171673	7.2823058844098	7.30362764812587	7.30037455274466	7.74957487085058	0.604357798525815	0.0252430609103813	0.188107712426566
Merged-chr1-128613968-2	chr1	128613482	128614482	+	878.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21683.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.36928816694	3.07937122429081	3.31094081072234	2.85304609970401	2.79139514905379	2.9810393771596	-1.85803077074108	0.00921102977956999	0.0950789437909018
Merged-chr5-105569141-2	chr5	105568641	105569641	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	49670.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.15273560485464	5.08385765543489	4.85236112300854	4.94666731174783	5.01162359197572	5.06561157068479	-0.0826103293747916	0.825632552005176	0.958871344165038
Merged-chr16-35901949-4	chr16	35901460	35902460	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-30578.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	7.095389035761	7.23965932686995	6.83290080449742	7.44763638768168	7.7544704177109	7.21507616308083	0.631746526713937	0.0209479916828066	0.166480392267891
Merged-chr4-137331923-2	chr4	137331423	137332423	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 3 of 5)	intron (NM_009861, intron 3 of 5)	25836.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	5.61194443270378	5.39892448809339	5.63749777602045	5.86500220916057	5.58485223757537	5.37499949793083	0.152016872301332	0.658237044660261	0.904969895444483
Merged-chr2-32451510-4	chr2	32450982	32451982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-12.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	7.62817390002508	7.6404878465491	7.46421506343024	7.66807779174479	8.08001251042313	7.66034519007141	0.35046667418437	0.154091906313062	0.523241150332653
Merged-chr4-9605629-4	chr4	9605133	9606133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177854, intron 3 of 11)	Tigger7|DNA|TcMar-Tigger	38084.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.05392519377789	3.952667480117	4.05052045448243	3.75000223702146	3.71412684256849	3.97831416594544	-0.648719726678551	0.20605534616699	0.596654135713492
Merged-chr6-29767160-2	chr6	29766660	29767660	+	740.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1283.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.9147501514905	4.84102743994361	4.68135521323348	4.73893155779824	4.70305853040933	4.5351523197147	-0.358608024159355	0.376201682340632	0.759088227619915
Merged-chr11-11886559-4	chr11	11886056	11887056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	3852.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	3.64254408932236	3.45083146352521	3.52753305472391	3.636767470212	3.35405649567194	3.65125822983219	0.0159169880001163	0.978188651887331	0.995070777384379
Merged-chr9-14381580-4	chr9	14381143	14382143	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028013)	promoter-TSS (NM_028013)	-401.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	4.7512081252624	4.63607247966083	4.95275017080702	4.33702371166801	4.60530171179813	4.35162551691754	-0.796791211416335	0.0694683915852853	0.344847030606635
Merged-chr12-113001840-2	chr12	113001340	113002340	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1219.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	3.94494224660843	4.34507083070553	4.63246980066896	4.25040391556435	4.21828718020245	4.42947376364171	-0.0823489546316107	0.869584932695604	0.969821240077951
Merged-chr1-132006327-2	chr1	132005827	132006827	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1278.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	3.07963723778374	3.2450833344041	3.16267855408679	2.81804181020719	3.25521474794092	3.34435300848822	-0.0239749699149881	0.972993837171642	0.993909316613403
Merged-chr12-75727597-4	chr12	75727097	75728097	+	878.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	8132.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	6.07886137853413	6.35262062084333	5.76398961072238	6.06633493019709	6.13000182909455	5.62219349610702	-0.220171047353085	0.522360619498841	0.847587801886238
Merged-chr5-138740349-4	chr5	138739844	138740844	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14737.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	3.30867390760356	3.1675282324563	3.63211392145747	3.08674927333145	3.18240560589601	3.40793953202692	-0.610493630055016	0.352521853729391	0.740194084833795
Merged-chr10-125389483-4	chr10	125388970	125389970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-60507.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	8.47550175479159	8.43250186078521	8.44902494486257	8.57465932610249	8.7755491334618	8.52087845421196	0.249887918208376	0.224129058665482	0.618970262998538
Merged-chr1-16329874-3	chr1	16329367	16330367	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189248.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	3.28101988704463	3.22163060930726	3.1334108688836	3.09593903117135	3.12849846262601	3.26291296170039	-0.239402100655279	0.706077149520905	0.922878730238431
Merged-chr2-33468568-4	chr2	33468083	33469083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027947)	promoter-TSS (NM_027947)	-51.0	NM_001355612	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	7.45673856671093	7.78019309089745	7.12152624269987	7.32760233914163	7.35794095157161	6.7894240398109	-0.436994980822573	0.146223712957273	0.510064920685029
Merged-chr6-124712165-4	chr6	124711682	124712682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	-4.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	7.41029729194976	7.76700076935924	7.55988453468287	7.37979576109078	7.66790799187962	7.3901835878266	-0.141016272905273	0.568777640929327	0.868728103030047
Merged-chr12-12249704-4	chr12	12249180	12250180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12459.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.30240540993232	5.25056800020374	5.29021634877532	6.02085170280623	5.62213885247418	5.78380302905121	1.01037496198692	0.00267087519139725	0.0385428690471353
Merged-chr18-12973283-4	chr18	12972762	12973762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008378, intron 1 of 10)	(CTCGG)n|Simple_repeat|Simple_repeat	-1198.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	8.16664617386268	8.66961362742051	8.05513810989405	7.94691739985383	8.38333762348028	7.89165616429851	-0.325122360629447	0.241704342937289	0.638803036215977
Merged-chr16-58509794-4	chr16	58509304	58510304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13622.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.99710367309395	6.92468490594932	6.8586247772547	6.97869966836823	7.0556942340331	6.49259980179271	-0.0783809625868125	0.777589973446298	0.945202525595529
Merged-chr12-16920735-3	chr12	16920234	16921234	+	727.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25756.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.28101415938281	3.91988151866464	4.06284464746117	3.95360895225404	3.89036620955433	3.8828948879918	-0.563486546212881	0.266710226747443	0.664172509867066
Merged-chr1-151499868-3	chr1	151499363	151500363	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360844, intron 1 of 8)	intron (NM_001360844, intron 1 of 8)	1128.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	6.69626888166871	6.91554179809384	6.54381790799579	6.60268895380522	6.64433424288807	6.73656675008448	-0.121854690587449	0.646970749559819	0.901147217868585
Merged-chr4-142073548-2	chr4	142073048	142074048	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	L1MD3|LINE|L1	-10750.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	5.72792830274361	5.84900699041995	5.86006447840884	6.14054495764524	6.24308408657154	5.76540608665384	0.467884079379361	0.136091196686672	0.492999618268348
Merged-chr15-27621089-3	chr15	27620601	27621601	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 2 of 6)	intron (NM_001013792, intron 2 of 6)	9592.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	4.04066544140907	3.55820202957255	3.67134812276548	3.72208194032337	3.52816101667103	3.45807823500707	-0.682238889055235	0.247527104753422	0.644478231814342
Merged-chr10-81133102-2	chr10	81132602	81133602	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3169.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.73442775422124	4.0401823605102	3.98858492459319	3.96163426249807	3.88472960872874	4.14846302018317	0.207509330445644	0.687079249478139	0.916983035113856
Merged-chr3-89428104-3	chr3	89427594	89428594	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011368, intron 12 of 12)	intron (NM_011368, intron 12 of 12)	-2120.0	NM_001293766	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	3.08418143248705	2.97560850495876	2.82431206668867	2.92004059040106	2.83784696984593	3.13547503059509	-0.0254164909288083	0.971273506453935	0.993727127580947
Merged-chr6-87840605-4	chr6	87840089	87841089	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1830.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	3.88682174741359	3.85799069588125	3.65801306073228	3.99676277190909	3.72665050592609	4.082603293984	0.390228570686345	0.466526925383486	0.817586753758551
Merged-chr10-53876126-4	chr10	53875602	53876602	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125193.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	3.84648821947781	3.82773199275662	4.55459151057557	3.76570758807102	3.6904768402326	4.40373906309415	-0.358184414128271	0.55905551927723	0.864901733108576
Merged-chr7-28430715-4	chr7	28430221	28431221	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	5470.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	4.86843800625025	4.70382860988363	4.81084030322342	4.70798386148544	4.85089652483554	4.98264144209565	0.118856870223092	0.762912270060022	0.941663714620562
Merged-chr11-68468174-4	chr11	68467659	68468659	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-34860.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.95862195561786	6.00488271572966	5.49675667389232	5.23719682682799	4.77324478690656	4.97166655998689	-1.65304936399241	1.27553972939082e-05	0.000492963817014174
Merged-chr3-116255928-2	chr3	116255428	116256428	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2444.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	3.24067734551646	3.02892666597176	2.81615037191617	2.9755743807173	2.89088964951962	3.24546592092692	-0.0133702823754274	0.985300516275522	0.996873682039026
Merged-chr12-100778486-4	chr12	100778001	100779001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-556.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	6.83922867158495	6.78004096173125	6.59478332055119	6.40338991460126	6.32429265644062	6.18753503426709	-0.69872607854111	0.00938454113226811	0.0962609588922294
Merged-chr16-22095958-4	chr16	22095474	22096474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	67325.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	3.9473463158172	3.90862343979699	3.95740604204282	3.77380229513588	3.46399672175174	3.67119591996208	-0.994283839023026	0.0672748572583022	0.339137666469697
Merged-chr2-92008469-4	chr2	92007961	92008961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	CpG	15709.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	5.29963228079523	5.46591007122762	5.15850293638478	5.42012265247783	4.9093918365231	4.80104587588537	-0.49203640618589	0.221777937632657	0.616623738915967
Merged-chr12-69197173-4	chr12	69196656	69197656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033222)	promoter-TSS (NR_033222)	-55.0	NR_033222	414085.0	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	8.01420556957833	8.24276856258786	8.06525415038546	7.83307316721532	8.04406008852564	8.01355907299445	-0.207063052226954	0.346203525907217	0.734515828466387
Merged-chr5-43279933-4	chr5	43279436	43280436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 7 of 10)	intron (NM_001177379, intron 7 of 10)	-44582.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	4.25406561291176	4.69083853108307	4.37058166144841	4.84645755662981	4.95096051407237	4.44070094848925	0.749305004944985	0.105562425121605	0.433670708658438
Merged-chr3-10330386-2	chr3	10329886	10330886	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018864, intron 1 of 8)	intron (NM_018864, intron 1 of 8)	1053.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	3.13194376408754	3.17566370152734	2.97122621403068	2.95459530728997	3.03645274533515	3.10399872065143	-0.313537927519281	0.638084561016012	0.897380718500389
Merged-chr6-83115507-4	chr6	83114993	83115993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020619)	promoter-TSS (NM_020619)	-13.0	NM_020619	57377.0	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	7.18215688523738	7.02759351346099	6.68758979015767	7.18064299554648	6.98058648449146	6.74676888736626	-0.0068603170298287	0.980436788777506	0.995512982807197
Merged-chr17-71486168-8	chr17	71485641	71486641	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10798.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	7.72049799339728	8.26146835223918	7.88322972124049	8.3131692537209	8.65374786285028	8.07133543778412	0.5551326430441	0.0408519394754534	0.252017213810315
Merged-chr11-120575561-2	chr11	120575061	120576061	+	715.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2308.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	4.27381103844526	3.98068483067739	4.62067174989584	4.24081431508676	4.42835450130444	4.49507112391446	0.219037687182833	0.656126224140779	0.904563844889502
Merged-chr7-27329533-4	chr7	27329052	27330052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113549, intron 3 of 29)	CpG	4096.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	2.64069351910241	2.77841163775211	2.61071402071635	2.71563127776177	2.64234030212245	2.86859024991422	0.31666985401626	0.672377870552371	1
Merged-chr8-117333162-2	chr8	117332662	117333662	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-16008.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.28716953025122	2.94082225338161	3.1670018915494	3.38407132811366	2.97687599063533	3.1811015869515	0.211755865747174	0.756885836441276	0.939745985027764
Merged-chr8-106500173-4	chr8	106499679	106500679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10673.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	5.97831054478483	5.88110853085665	6.08968599324814	5.9143474923286	5.94694043859004	6.10760506267365	0.0123790593117939	0.966585919739902	0.992349609766636
Merged-chr3-53483887-4	chr3	53483378	53484378	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4915.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	3.78096034609425	3.88129207149722	4.04442139841592	3.92499496364609	3.55751028455937	4.24048304845606	0.0793813406892841	0.888363672654165	0.97401529899353
Merged-chr4-132353665-4	chr4	132353172	132354172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003270)	promoter-TSS (NR_003270)	14.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	7.82662178711156	8.13958955530064	7.84340962366936	7.96582954837861	8.16160046192898	7.58760469796197	-0.0172348626050758	0.946683579731379	0.988007649185823
Merged-chr12-33151482-2	chr12	33150982	33151982	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	3796.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.31142945587248	3.13997757008711	3.1942854473832	3.68163748457135	3.39218951067366	3.32895878684656	1.02082065619349	0.103399955577283	0.428596564032599
Merged-chr13-48870230-6	chr13	48869715	48870715	+	891.986084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011078, intron 1 of 21)	CpG	670.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	6.34894879692984	6.44956251343931	6.20762806826466	6.33792185607379	5.78461911436885	6.09475992318322	-0.431725996752308	0.166013079131247	0.541109862183596
Merged-chr11-85670464-2	chr11	85669964	85670964	+	566.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	49280.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.26583088761842	5.56176682063631	5.4217451300139	4.92172047626801	5.26013959040125	4.86922283365497	-0.765398860474426	0.0452488426833432	0.268483983896748
Merged-chr13-41019953-4	chr13	41019423	41020423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	3673.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	6.08796866154632	6.03991005438988	6.13809789445495	5.96471555001901	6.27352022785326	6.33610874379456	0.192928729381707	0.511010934451245	0.841284433418132
Merged-chr5-97046564-2	chr5	97046064	97047064	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 7 of 15)	RLTR20A4|LTR|ERVK	48875.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	3.2558259830728	3.14424576447221	2.97045985317274	3.32825143172759	3.20189756311512	3.45472397255987	0.795375399848641	0.226138326108091	0.621140322788657
Merged-chr11-100851433-2	chr11	100850933	100851933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	-848.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	5.33144647456815	5.13127602210314	4.86811494630779	5.15637054714672	5.22031854467404	4.9745026712133	-0.0136364834313379	0.971591586485812	0.99377981119604
Merged-chr8-3848353-2	chr8	3847853	3848853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130905, exon 6 of 6)	3' UTR (NM_130905, exon 6 of 6)	5933.0	NM_130905	170780.0	Mm.52281	NM_130905	ENSMUSG00000040197	Cd209e	SIGNR4|mSIGNR4	CD209e antigen	protein-coding	2.46750615674952	2.48933646978255	2.69442608507435	2.35970249342772	2.38324194904428	2.32648764258285	-1.21000331407294	0.146732273782934	1
Merged-chr8-88667082-2	chr8	88666582	88667582	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19735.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.58891445416151	6.38704007250668	6.87457102757803	6.86525338531202	7.01679504688725	6.93279607402777	0.50098179970571	0.0651754851500753	0.332868533229599
Merged-chr18-75696642-2	chr18	75696143	75697143	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	CpG	1053.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	4.28421792116817	3.86118454823885	4.08095882619686	4.04888499321727	4.31851767605977	3.94907730233171	0.10353884722662	0.841472284965409	0.962952316532599
Merged-chr5-137864697-1	chr5	137864197	137865197	+	545.0	f1_balb.idr	Intergenic	Intergenic	-6648.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	4.67093636818305	4.54181554714157	4.68315448005788	4.43740071852388	4.44474959465641	4.55109853963264	-0.385469980943427	0.357477353998959	0.744062225368359
Merged-chr9-65909435-2	chr9	65908935	65909935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	425.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	6.13752756706128	5.50619115804104	6.17540708689218	6.0989571464066	5.84086946735559	5.95610978907531	-0.00248289243865378	0.994303981633289	0.998918571480046
Merged-chr6-134632327-3	chr6	134631808	134632808	+	705.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026345, exon 1 of 4)	5' UTR (NM_026345, exon 1 of 4)	180.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	3.00174563500694	2.78295322398378	2.8624429918403	2.63391318548976	2.61625855337786	2.81402740213584	-1.06868662735959	0.151828021992775	0.51956841677873
Merged-chr5-88561295-2	chr5	88560795	88561795	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-3745.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	2.48859796756811	2.47392388114066	2.53377948660258	2.25736461138077	2.14620535100892	2.48285653879933	-1.36305977939999	0.123024454771829	1
Merged-chr19-41912467-3	chr19	41911978	41912978	+	870.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	CpG	607.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	7.12763107846797	7.45911232483479	7.14169538994461	6.82150946261591	6.82106231927222	6.73143164622416	-0.703982765509565	0.0056075364250909	0.0664755507706174
Merged-chr11-69918678-2	chr11	69918178	69919178	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166589, intron 3 of 6)	intron (NM_001166589, intron 3 of 6)	1952.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	4.21160660088445	3.93332484464178	4.32771573137258	3.96989238916743	4.21419588132659	4.13060901162777	-0.13701536459669	0.782458350287243	0.946539811739662
Merged-chr6-49012416-4	chr6	49011904	49012904	+	720.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12788.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	3.81462014956183	3.77409297524899	4.1551118744328	4.34020744035977	3.82749162308094	4.08673286671471	0.537694117543315	0.316220139855799	0.710330041496715
Merged-chr10-79877902-4	chr10	79877391	79878391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1776.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	5.95016979380594	6.06675698219302	6.30845478404287	6.34680949413645	6.45365790953602	6.40544142341877	0.497535869779845	0.0803949538909177	0.37523159810498
Merged-chr5-113017212-4	chr5	113016713	113017713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1675.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	4.76189845505551	4.36986982193065	4.51743269487562	4.45905372962046	4.55588919803917	4.58429582459199	-0.0718299950353639	0.869115605087933	0.969772902205443
Merged-chr3-58414640-4	chr3	58414140	58415140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-80.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	8.33559499031409	8.53093667555981	8.13070625509294	8.3596951415932	8.3465693674065	8.18604811892381	-0.0648096423331325	0.772400715784231	0.943716660313239
Merged-chr12-3696308-4	chr12	3695787	3696787	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-110693.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.06409086715289	6.19329573606816	6.17139534043638	6.69812451803438	7.05478413590883	6.31845538091821	0.966094411057249	0.00184083540128943	0.0289714832741614
Merged-chr8-124290990-1	chr8	124290490	124291490	+	798.5	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	59596.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	2.30288263146748	2.42820948085174	2.60245643464654	2.20784551930414	2.13191126457259	2.36732295861373	-1.46777714494692	0.100118590716911	1
Merged-chr17-71254892-4	chr17	71254413	71255413	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 7 of 7)	intron (NM_001357337, intron 7 of 7)	50259.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.55409063193573	3.14982000295757	3.41464200019361	3.10076384613894	3.00578968436485	2.95365165341673	-1.56063003570186	0.0228588563078819	0.176523407486426
Merged-chr10-121494104-4	chr10	121493601	121494601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17851.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.66707350099761	5.54674389328066	5.556889833175	5.48337030261772	5.33853902311233	5.56353650827971	-0.260209421177446	0.426517475431541	0.793840707522572
Merged-chr10-22286504-2	chr10	22286004	22287004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177775, intron 4 of 5)	intron (NM_001177775, intron 4 of 5)	13030.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	2.92370851079416	3.5232020139873	3.20081426376971	3.00074204118648	2.95452036756322	3.15743563897238	-0.888463878717113	0.20987902218643	0.601787200098326
Merged-chr2-35232162-4	chr2	35231667	35232667	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24192.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.89500176015517	4.67350707716297	4.97070988484991	5.12051332948655	5.17794727830878	4.96377582676033	0.547924814454072	0.152189931532553	0.52018648631945
Merged-chr19-11060572-4	chr19	11060063	11061063	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.60618676644292	5.71731070616133	5.90515909901924	5.73729870615403	5.69255479532795	5.72205413731724	-0.0426827596380511	0.891757403251634	0.974942585822634
Merged-chr9-37656537-3	chr9	37656046	37657046	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	766.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	5.26332141037329	5.60875708168342	5.37840972080113	5.03813374482773	5.10647255713797	5.04639150129541	-0.733177265328099	0.0417357446386715	0.255499399639095
Merged-chr1-88301524-2	chr1	88301024	88302024	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5188.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	2.97769518672288	3.24310224300764	3.21763146661296	3.06433059697222	3.09900037903859	3.28855625364846	-0.00309258974319026	0.996240511582079	0.998961028701257
Merged-chr14-70800597-3	chr14	70800109	70801109	+	834.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26228.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.51236454149952	4.63700104357373	4.82576179321882	4.66494153339017	4.11002993564517	4.89005215716815	-0.17578531774941	0.716883962450898	0.926897377789051
Merged-chr2-102899401-4	chr2	102898915	102899915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2250.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.04370561993572	6.93176225992816	6.87332985485472	6.96599389919434	7.13851122911915	7.28687139294656	0.270470884346848	0.277188317767751	0.674414033884588
Merged-chr1-171286595-2	chr1	171286095	171287095	+	883.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 2 of 13)	exon (NM_013919, exon 2 of 13)	1366.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	3.21456543541429	3.09831771936003	3.23501834931284	2.92791161687997	2.91961886832304	3.60970555934396	0.0340534792543232	0.962553210843041	0.990895822831541
Merged-chr5-31196710-2	chr5	31196210	31197210	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153680, intron 8 of 14)	intron (NM_153680, intron 8 of 14)	3406.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	5.99801686998114	5.63199972098597	6.12802948560272	5.72328693313313	5.89201006401697	5.72603570650074	-0.246639105121903	0.451150276564184	0.808949729821197
Merged-chr10-17676644-4	chr10	17676138	17677138	+	742.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46590.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.0652034137205	4.17089107147528	3.94408201762528	4.09368581520665	4.21445674291177	4.1617148507546	0.25408331883656	0.597057472766752	0.880132484037415
Merged-chr5-140842087-3	chr5	140841594	140842594	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11663.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.97787052803669	5.92220274118164	5.69608140940036	4.41542593190463	4.54447051781542	4.59467737816316	-2.88848340066492	2.46679555105069e-13	5.27653275608806e-11
Merged-chr13-45000994-4	chr13	45000488	45001488	+	910.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	1108.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.86809158706894	6.99708459970119	6.46038687444924	6.85091799335607	6.68897500391398	6.12639854629359	-0.315236506637947	0.331968999372075	0.723284088925227
Merged-chr18-54998655-4	chr18	54998175	54999175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6084.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.15798498312599	5.24924276201652	5.20573259893133	5.24390168886842	5.36804019006387	4.9865294818483	0.0358401371123606	0.921336949653467	0.982526400261012
Merged-chr2-129304673-4	chr2	129304164	129305164	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 5 of 6)	intron (NM_010554, intron 5 of 6)	5308.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	5.52856366283011	5.21637008706185	5.4119287227099	5.64342528200552	5.66297924495857	5.69897772425844	0.524329764407061	0.113484413200297	0.450109011832741
Merged-chr5-124031233-4	chr5	124030743	124031743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1017.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.95836973752907	7.25423785403164	6.87672718977641	7.34902884828532	7.60634156951742	6.98008586099873	0.450772764949843	0.112153446676808	0.44736644252559
Merged-chr13-95324386-3	chr13	95323885	95324885	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-440.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	4.11729329330576	4.40912362187963	4.05285616729952	4.1005495976212	4.1745591555188	3.85826039358567	-0.420196382241893	0.407237350002555	0.781408565727585
Merged-chr11-23659058-4	chr11	23658571	23659571	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-6603.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	6.59179333063581	6.30536518947862	6.31681651642155	6.4467498510613	6.53413189160669	5.99448073175514	-0.0900788075707285	0.768730949650132	0.942929489629226
Merged-chr11-69120326-3	chr11	69119820	69120820	+	867.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033041)	promoter-TSS (NM_033041)	-133.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	3.97433141953101	3.71933468212091	3.92286289979746	4.34022819954851	4.34322129530691	4.19012110047704	1.2290054848702	0.012670021987623	0.118708162317997
Merged-chr11-20739378-2	chr11	20738878	20739878	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	2178.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.7249632312685	4.86068640700899	4.64676434697695	4.69224812398656	4.83536509066031	4.71360096763739	0.000246268586835234	0.999509621254644	0.999920050950963
Merged-chr7-6157045-2	chr7	6156545	6157545	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	5.15628035094398	5.39285258426349	5.23541478454853	5.24200455034922	5.1777675698046	4.98554182072887	-0.249217933396589	0.490426411993198	0.830053405840466
Merged-chr1-192771163-2	chr1	192770663	192771663	+	933.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144881)	promoter-TSS (NM_144881)	56.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	6.48796586960229	6.4424476245617	6.26210213415771	6.67263873370049	6.86399099771405	6.11908910734796	0.318468294365518	0.311897062493119	0.706762820695192
Merged-chr1-43912467-4	chr1	43911956	43912956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21538.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	7.53446241151412	7.55560048667092	7.28893541651492	7.53914524326543	8.01432425935292	7.49152933910721	0.35398200071794	0.179263959175876	0.560780311857825
Merged-chr7-19120578-2	chr7	19120078	19121078	+	725.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	719.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	4.48870275700908	4.1676710696397	4.29326068412231	4.57306780083325	4.30250374773265	4.17043119178201	0.100291419592884	0.831749108135198	0.960478468368024
Merged-chr2-90655671-4	chr2	90655164	90656164	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21551.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	3.70246161591915	3.3525954629763	3.64242281577458	3.26715003965017	3.14276514238172	3.80735190109127	-0.504912087866071	0.446305077191368	0.805801173088126
Merged-chr1-86407147-4	chr1	86406656	86407656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17795.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	7.68236844065241	7.8264016818014	7.65069211327605	7.24573255300807	7.71135482279302	7.38595914842268	-0.367237702844284	0.141038502757347	0.501775771225985
Merged-chr13-49188123-4	chr13	49187630	49188630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	583.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	9.31655307480258	9.37573947088756	8.69491586217639	8.93337992432008	9.3073342387777	8.62452537955671	-0.24154548917071	0.395577349453623	0.772929437438935
Merged-chr17-7931764-4	chr17	7931257	7932257	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145968, intron 8 of 9)	intron (NM_145968, intron 8 of 9)	5757.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.13467570283815	4.93317024997803	4.75455659502034	4.80682318876445	4.80552256954153	4.6978155836234	-0.410538854608071	0.301801045649659	0.698499477656988
Merged-chr17-50157936-4	chr17	50157425	50158425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32572.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	8.1675533054876	8.37055810574965	7.77494560868281	8.23277250189977	8.51179340017172	7.90955474893232	0.160238642781078	0.559288037152103	0.864901733108576
Merged-chr8-25978021-4	chr8	25977533	25978533	+	764.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1289.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	5.40873630114905	5.69766406706015	5.971697870314	6.26336470164565	6.28515897117068	6.47740543953676	1.10985017715551	0.000508922757242985	0.0106264604227539
Merged-chr16-21382360-4	chr16	21381859	21382859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40759.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	6.37354168537843	6.29266606034971	6.14491367461966	6.39567568787006	6.56144110516214	6.33105149911819	0.263722150692185	0.342357325534743	0.731295074782946
Merged-chr1-151608001-3	chr1	151607515	151608515	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	36642.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.32865921710678	4.27672899978286	4.51979626971164	3.97025374686152	4.08161713237133	3.96314964105583	-1.01014469191716	0.0356598183337226	0.23201049057099
Merged-chr9-47533609-2	chr9	47533109	47534109	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	3257.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.35904367433249	3.38363160337502	3.24818734156428	3.13871689648517	2.97602126971897	3.01793659344954	-1.26995028585277	0.0524719508922189	0.292945062595181
Merged-chr17-71290971-1	chr17	71290471	71291471	+	589.0	f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	Lx2|LINE|L1	20040.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.24624484708261	3.26272485457	3.34626843908663	3.21160285713521	2.84329791148661	3.13477022416609	-0.940771003828391	0.164088838405951	0.538192463833164
Merged-chr10-37321389-4	chr10	37320889	37321889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182463.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.30377937913459	5.62849578154343	5.43751094355747	6.1533867673781	5.6820551077423	6.19259999836285	0.290637724414815	0.460897453869324	0.814802506471053
Merged-chr19-7039524-4	chr19	7039042	7040042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 1 of 13)	CpG	484.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	7.36529890807545	7.44220817213217	6.8458682266017	7.1319006578542	7.12980840740245	7.10494732667139	-0.199714298021617	0.45865540803922	0.813172231997942
Merged-chr10-121473021-2	chr10	121472521	121473521	+	849.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	3229.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.24977478841966	5.3660028395173	5.03387211177767	4.76313646311925	4.97955712810783	5.0636394085589	-0.618643658429569	0.102501517548789	0.426993390944211
Merged-chr19-46044364-4	chr19	46043903	46044903	+	616.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	908.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	5.4773052782411	5.19487022996265	5.51310227406506	5.41672064748595	5.12568208103978	5.60179762876454	-0.027280705142343	0.94052745861651	0.986852666940686
Merged-chr7-35151869-2	chr7	35151369	35152369	+	845.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32576.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.40468845364406	3.42319341869094	3.5486417813092	3.4049621017916	3.14125696067331	3.66817554809336	-0.165011805293717	0.791845920238256	0.94981786289531
Merged-chr3-127837577-4	chr3	127837076	127838076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346718)	promoter-TSS (NM_001346718)	-53.0	NM_145964	211556.0	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	6.72151124230236	6.9043455474575	6.68054303982528	6.42792806198317	6.43101953142085	6.53797650817176	-0.500852551113574	0.0546260463927749	0.300164475742871
Merged-chr15-102459644-3	chr15	102459123	102460123	+	881.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 2 of 4)	intron (NM_025385, intron 2 of 4)	453.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	6.7038467580841	6.80654318839629	6.90075264968949	6.80328535978315	7.11552815405937	6.97270229651788	0.266708044501554	0.297323079289354	0.693940107753178
Merged-chr6-28880978-5	chr6	28880428	28881428	+	982.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-49181.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.85272248740333	3.77423721948291	3.5283243821703	3.41572224798088	3.42865413792601	3.70728777555432	-0.755410462521335	0.193108863882356	0.580267363879138
Merged-chr16-35764207-4	chr16	35763723	35764723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	5133.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.97169810957562	5.97485313703563	6.16805203617721	5.59604464834769	5.68252401823723	5.72768503466545	-0.653829273587061	0.0316751257263913	0.215780282742728
Merged-chr2-150672933-4	chr2	150672417	150673417	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4677.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	6.32222948491096	6.00749067371786	5.76124792476389	5.65458250052644	5.73688142625259	5.17896381399606	-0.889361375936407	0.0152208783041935	0.134048537594802
Merged-chr11-11717903-2	chr11	11717403	11718403	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	27726.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.09334356172806	3.13072068775478	3.29225561458904	2.88291145979262	3.16192766059852	3.46559680678311	0.0636378062507891	0.926634859552267	0.983551822187064
Merged-chr1-152522996-2	chr1	152522496	152523496	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	102221.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.11377310460889	2.79646635498063	3.14639755223155	2.93234256003031	2.62163206918041	2.92962747148823	-0.940967510274996	0.209492171077527	0.60106287959101
Merged-chr8-116629174-4	chr8	116628662	116629662	+	929.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103829.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	5.08320520155595	4.94583651845908	4.8971074012621	5.62507130259149	5.78300413722974	5.56582949675588	1.3555068142439	0.000103908627402387	0.00292688864891599
Merged-chr11-97987771-4	chr11	97987262	97988262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	8.16152969173985	8.15988194422644	7.7219760638849	7.95302536638727	8.29043289147117	7.52791071864158	-0.0909038235513157	0.750299800581434	0.937550343416037
Merged-chr4-136117201-4	chr4	136116666	136117666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26656.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.03955952184462	6.95356899979219	6.99178586804492	6.70011277082954	6.70618005148881	6.66379701625692	-0.470787064789765	0.0539374498902559	0.297929836975151
Merged-chr1-171714101-2	chr1	171713621	171714621	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32129.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	6.40921810299549	6.59801125210553	6.05002105575146	5.76952266276797	5.68116578773842	5.73005755217789	-1.13340571151663	0.000279772113856198	0.00657235405131184
Merged-chr17-15563322-2	chr17	15562822	15563822	+	780.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144809)	promoter-TSS (NM_144809)	1.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	3.13945311326493	3.16025001031486	3.20917950988522	3.08957925045202	2.76821567345888	3.04977726719371	-0.905244803887552	0.190099978894642	0.576220867868763
Merged-chr10-69321461-4	chr10	69321014	69322014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31398.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.46585571532248	4.420245070749	4.65780963535877	5.03542434344691	4.7147652228102	4.51405122197675	0.633886661845485	0.144502612150947	0.507225199403334
Merged-chr12-51831894-1	chr12	51831394	51832394	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-2358.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.72542226575951	4.97507335535	5.05963407545836	4.50494718092829	4.53125987961848	4.88961150707932	-0.644846218072818	0.124031732230124	0.471278757298044
Merged-chr9-118554697-3	chr9	118554228	118555228	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 14 of 23)	intron (NM_018748, intron 14 of 23)	48410.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	4.20425377345982	4.0250586209132	3.92898419692163	3.68173923300215	3.57134087467936	3.84744706941298	-1.1746889984334	0.0272888194824385	0.196814431090816
Merged-chr10-80072471-2	chr10	80071971	80072971	+	664.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 5 of 32)	exon (NM_183426, exon 5 of 32)	2968.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	5.37414926782545	5.02993312222988	5.29507379792632	5.09221604845673	5.3822285621045	5.32763657675066	0.0753989022978333	0.836801290141002	0.962001762335242
Merged-chr11-77686677-4	chr11	77686212	77687212	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	573.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	7.41796594834002	7.55753530633173	7.78460910530227	7.62102680746081	7.60916157031345	7.67116387601935	0.0633635642982859	0.785010215249172	0.947850129107983
Merged-chr18-20816656-4	chr18	20816161	20817161	+	975.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361188)	TTS (NM_001361188)	-70257.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	4.58402290253671	4.7052221971372	4.74350338286065	4.42760681880107	4.43204474751806	4.65711526339395	-0.426484484173502	0.309595048794481	0.705209571548034
Merged-chr8-120109356-4	chr8	120108878	120109878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	7.44404776739468	7.3859735165767	7.54959325769685	7.65878492873254	7.84937648661952	7.44350793488631	0.308733028568155	0.196167523356749	0.583940557712492
Merged-chr4-131909995-5	chr4	131909476	131910476	+	896.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 3 of 4)	RLTR31D_MM|LTR|ERVK	10053.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	7.36501383284171	7.30804029333498	6.99278986777859	6.35583726177702	6.69365653183412	6.1325234561191	-1.24613617254959	2.76347973809425e-05	0.000960901053269313
Merged-chr11-34010996-4	chr11	34010513	34011513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17820.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	6.97891462340225	6.92477039036375	6.98279367000832	6.83001743630591	6.92896937374409	7.10469352170248	-0.0109485179887995	0.964527751318358	0.991478598183903
Merged-chr5-104033245-1	chr5	104032745	104033745	+	725.0	f0_balb.idr	Intergenic	Intergenic	-11449.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	4.53849161903379	4.34977429576624	4.13082531842207	5.05885752884785	4.69157921840986	4.50115213732942	1.00550484447563	0.0325231707577044	0.219337655406636
Merged-chr2-76370103-4	chr2	76369690	76370690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153405, exon 1 of 10)	exon (NM_153405, exon 1 of 10)	206.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	5.24944129473632	5.3486737417095	5.35503227636325	5.52945906119631	5.32723528742325	5.3567233996929	0.177032338112569	0.601902885006442	0.882164677850668
Merged-chr13-93302900-2	chr13	93302400	93303400	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-857.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	6.20442197896422	6.25639756531784	5.90844354488255	5.98041080094544	6.32548116465957	6.17833656459577	0.0543051992406745	0.857999049329385	0.966785186918462
Merged-chr16-65739854-3	chr16	65739358	65740358	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75775.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	1.82345950629506	1.81137179112161	1.90768975568027	2.1431558122468	2.34104337063009	2.45687046567809	5.83008999932178	3.29392374959781e-05	1
Merged-chr18-44759233-4	chr18	44758730	44759730	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085373, exon 2 of 19)	exon (NM_001085373, exon 2 of 19)	52952.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	6.44589024158256	6.83680821492747	6.57633344136961	6.97943904458961	7.20234111659647	6.86233008833962	0.612283735166622	0.0257270547967027	0.190179920847848
Merged-chr4-9650889-4	chr4	9650386	9651386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	MTB_Mm|LTR|ERVL-MaLR	-7169.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.60249632369163	4.67949390491646	4.54049229232439	5.38655078587627	5.56989876027602	5.41501064113764	1.81315851545908	1.75619882785478e-06	8.85397915308632e-05
Merged-chr10-43479546-3	chr10	43479073	43480073	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	CpG	433.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	7.17151533244758	7.04510878625826	6.87614623299813	7.31116674932424	6.7487307904819	6.88990033476394	-0.0526637365833866	0.851781543919157	0.96531854415899
Merged-chr4-111721108-2	chr4	111720608	111721608	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1098.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	6.76546469241683	6.95877620337807	7.09358167517355	7.35971407410856	7.8432497208519	7.79023949222593	1.10174987530151	2.96802329318617e-05	0.00101966673071608
Merged-chr8-78508893-4	chr8	78508406	78509406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	22.0	NM_001252089	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	8.57955679493326	9.03074780646242	8.47478286705129	8.64290092117425	8.81565671878285	8.32601018683758	-0.148614037561248	0.56638198106259	0.867334950681979
Merged-chr6-97413984-2	chr6	97413484	97414484	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	B3|SINE|B2	45302.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.80463746990963	3.85095682797964	4.05381739117124	3.82212774679267	3.58157169220988	4.03153442942721	-0.27714977464891	0.609697412013127	0.885308220347415
Merged-chr14-79532554-4	chr14	79532063	79533063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	16889.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.94391272503806	6.66918466896091	6.75470564392104	6.51706727932753	6.9779090840049	6.50828883050064	-0.148374825144714	0.607211771367358	0.884448083779426
Merged-chr14-40924512-3	chr14	40924036	40925036	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	MIR3|SINE|MIR	23673.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.43061913567744	5.83730158573901	5.63292858545466	5.4653685843741	5.3570683849183	5.69484379822819	-0.27167007503273	0.431155647624428	0.796688090876857
Merged-chr5-34233945-4	chr5	34233445	34234445	+	759.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 4 of 12)	intron (NM_001015039, intron 4 of 12)	-46235.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	4.14723614990888	3.7789731561537	3.76206093153638	3.57089006614817	3.6691971890728	3.36791661695591	-1.20929419208664	0.0425012246839765	0.258432074840248
Merged-chr1-173682438-4	chr1	173681937	173682937	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162938, intron 3 of 6)	intron (NM_001162938, intron 3 of 6)	8757.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	3.53944863945783	3.35271861301927	3.31010964979782	3.53552371582566	3.90543285621108	4.42014587459026	1.95856405022102	0.00250051699931311	0.0367537570179906
Merged-chr10-127583684-2	chr10	127583184	127584184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 18 of 88)	intron (NM_008512, intron 18 of 88)	37464.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.16920656590635	2.9690593682129	3.21087862236277	3.04690121692627	2.79484986779503	3.22710101477532	-0.401427923000159	0.565846407387023	0.86688237163883
Merged-chr17-69145979-4	chr17	69145489	69146489	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-10755.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.64523840504167	4.58714917269787	4.71667637589099	4.69950390601228	4.53702079388921	4.81865633515191	0.0800904929116553	0.84546876848654	0.963793053374187
Merged-chr19-46708082-3	chr19	46707586	46708586	+	650.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020577, exon 3 of 11)	exon (NM_020577, exon 3 of 11)	643.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	5.96005495093137	5.89644860836508	5.80644090913941	5.0425151857478	5.41944104521096	5.29990886768435	-1.16748054076259	0.000604211761670226	0.0122116230908565
Merged-chr12-3870279-2	chr12	3869779	3870779	+	785.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8035.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.42512967745718	5.30988376573138	5.12124968575418	5.19530084443134	5.28615068870963	5.04135948552841	-0.226610594511529	0.529655814675575	0.851027930520951
Merged-chr1-128707922-4	chr1	128707435	128708435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115636.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.95054583179163	4.54837014886595	4.63681659333565	4.03402955036623	4.17457742819091	4.17391462970836	-1.54869654700132	0.000896799286742536	0.0165603362297543
Merged-chr3-41563365-4	chr3	41562858	41563858	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172303)	promoter-TSS (NM_172303)	-25.0	NM_172303	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.58620236715276	5.67598878908012	5.2416594409644	5.46440701235165	5.2829216737159	5.4340674001978	-0.263330607294038	0.450559085798787	0.808443910792592
Merged-chr6-118127355-4	chr6	118126863	118127863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	11467.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	5.45778281603323	5.6765624316839	5.34753107337563	5.01621959838844	5.30019536469114	5.28435998853148	-0.59199132599523	0.0969158401324949	0.41505858385633
Merged-chr3-69128327-3	chr3	69127823	69128823	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	6.09556114852987	6.55674792981749	6.21626290452903	5.8744531478031	5.90824004968402	5.60889497433992	-0.851119952729268	0.0079050675135488	0.0853464198348733
Merged-chr7-100962125-2	chr7	100961625	100962625	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	2241.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.6478112814891	6.7000301254107	6.56952944232333	6.07896408375759	6.60712284677228	6.39438026379165	-0.411224683007477	0.157624901285179	0.52908202861787
Merged-chr14-55015820-1	chr14	55015320	55016320	+	706.0	f1_balb.idr	intron (NM_026890, intron 1 of 10)	intron (NM_026890, intron 1 of 10)	366.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	6.83736562350395	6.99870120364063	6.54659148249619	7.20578950631618	7.16185451852407	6.53018534192043	0.300316603318435	0.32799321229937	0.720172556707989
Merged-chr15-62039715-2	chr15	62039215	62040215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	458.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.41241911534124	7.75269757134058	7.4303749360283	7.78206723608451	8.06248291209642	7.29057568187413	0.311935512118502	0.276099292726242	0.673410731557322
Merged-chr1-75168657-4	chr1	75168144	75169144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159906)	promoter-TSS (NM_001159906)	-2.0	NM_001159905	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	7.08538086688474	7.23870113479084	7.31659760866672	7.17268454185576	7.08887920019501	6.90707303298054	-0.221314877505822	0.366920388154242	0.751972999808775
Merged-chr12-30266025-3	chr12	30265519	30266519	+	695.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324520, intron 8 of 16)	intron (NM_001324520, intron 8 of 16)	107356.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	3.02153966246362	2.82931212082414	3.07244691079925	2.5672695954418	2.54049182783444	2.59837871946797	-2.37565228478437	0.00358231663712331	0.0480073124080781
Merged-chr4-134099440-4	chr4	134098941	134099941	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-3142.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	7.34919453476211	7.26074800229254	7.21716338552009	7.65382613226428	7.85606572517526	7.69041830197551	0.673360305520832	0.0030200581691249	0.0423495807374621
Merged-chr7-135652409-4	chr7	135651937	135652937	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-123.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	7.44125032107831	8.08031563540995	7.54854409807882	7.73745830143446	8.06093511176382	7.68264308583075	0.164020051184964	0.557962234106679	0.86443214373182
Merged-chr1-191086723-4	chr1	191086229	191087229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11685.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	8.09186683026231	7.96259294784594	8.02145346438851	7.97779030119894	8.16765619372414	7.8173776745383	-0.0331811392568983	0.882055000111306	0.973002238292341
Merged-chr7-130547373-4	chr7	130546883	130547883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-2.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	7.02773924554175	6.77926994343498	6.33560875474274	6.52191408566938	6.59524612125283	6.63892465783251	-0.272809751184408	0.357481313928044	0.744062225368359
Merged-chr8-46795514-4	chr8	46795029	46796029	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	B1_Mur3|SINE|Alu	55784.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.32426647244678	4.93450600196068	5.2691720810625	5.03938197943236	5.21706569402586	5.10503887023758	-0.116311841731669	0.756460859752067	0.939624936081835
Merged-chr12-3759672-4	chr12	3759184	3760184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-47296.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.24628942962674	6.32145859462665	6.51750939530173	6.2266570396741	6.22907824605612	6.22409224644392	-0.21899114664023	0.429905971868818	0.795932984163509
Merged-chr15-99876956-3	chr15	99876470	99877470	+	667.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	-1514.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	6.38742157261635	6.85147600818445	6.39661947183355	6.76306156425904	7.03034736716823	6.43624983317358	0.327659598285561	0.29536046412867	0.692233149289309
Merged-chr3-60559980-3	chr3	60559502	60560502	+	907.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	58823.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.13970719451952	4.16194522351777	4.07759042910873	4.09090205380716	4.13125501921806	4.32677669945607	0.142436433342145	0.7628163985665	0.941663714620562
Merged-chr5-118381534-4	chr5	118381010	118382010	+	975.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136283.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	5.44742023243019	5.72174747815816	5.62587919213745	5.46226060500263	4.95688138221866	5.21120458122512	-0.745073655664517	0.0415901208471841	0.255041194181252
Merged-chr12-84194828-2	chr12	84194328	84195328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	-813.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.70395024588563	5.99053091071422	6.09657285725481	6.45353035723289	6.10320773099893	6.11223123151031	-0.129348165134014	0.706350195744873	0.922959194348248
Merged-chr4-148626428-4	chr4	148625947	148626947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003898, intron 1 of 6)	CpG	549.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	8.86942867972043	9.23766179431285	8.58465157554115	8.7428372984249	8.8054841991967	8.57039864188038	-0.300800676087616	0.223332501912291	0.618087468987021
Merged-chr7-141264274-2	chr7	141263774	141264774	+	978.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_016850, exon 7 of 10)	exon (NM_016850, exon 7 of 10)	2150.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	4.02029942252641	3.48486267916026	3.70930700290928	3.75816658642588	3.58330223212752	3.72733424684838	-0.237152877633234	0.680983857318496	0.914522966124234
Merged-chr7-102233815-4	chr7	102233338	102234338	+	978.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	10810.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	5.24721408021196	4.55148915877295	5.32831003596351	5.0803745944042	5.02416424119598	5.33330007279064	0.134874612723732	0.756545027154163	0.939629132869937
Merged-chr10-93124352-5	chr10	93123799	93124799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36577.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	6.70465271368721	6.86713884488931	6.88642765749837	7.45315337820757	7.61434050533066	7.17505076922212	0.928617614877441	0.000271175882906137	0.00641387233224953
Merged-chr6-52158291-4	chr6	52157802	52158802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	15.0	NM_010449	15394.0	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	5.69976301380776	5.4713521467437	5.61342958534186	6.25292299189123	5.76640957926384	6.04763798612976	0.779433147556911	0.0180468676306768	0.151070800987259
Merged-chr2-62461008-4	chr2	62460492	62461492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22661.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	3.13692902954447	3.18294474800076	3.61345360448873	3.54774705934824	3.14655632658316	3.31481217656544	0.0921626205308881	0.889199504057849	0.974207858658472
Merged-chr12-59219895-4	chr12	59219404	59220404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	-421.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	8.25166449064953	8.45375492007715	8.24121480070354	8.21468415564036	8.24515304972169	8.2198563707366	-0.1333597172278	0.522071953227023	0.847437132360093
Merged-chr11-69420007-4	chr11	69419500	69420500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6325.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.38688774454499	8.33850938801236	7.89783403620442	7.88504649138687	8.17204656456561	7.8796116002122	-0.340384939425043	0.170031516516692	0.547289560416266
Merged-chr11-103222941-2	chr11	103222457	103223457	+	854.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 14 of 15)	B1_Mur4|SINE|Alu	-4525.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	4.71038539992623	4.39118018647486	4.81841513275898	4.7913068131341	4.55951758637216	4.65645286184365	0.0615199467069238	0.886040093139437	0.973674760515678
Merged-chr16-78267677-4	chr16	78267187	78268187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12233.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.95186567145285	5.76782624238195	5.9278319642255	6.00417467956383	6.09143073228895	5.788740898554	0.168110789335801	0.581106677552593	0.873228285171611
Merged-chr7-88303697-4	chr7	88303192	88304192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	25607.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.07715532041824	5.96601256800908	5.76890381521624	5.96097713000724	6.09816865932265	5.85751275834759	0.055707638373523	0.854983596434118	0.966038421653227
Merged-chr3-121598037-2	chr3	121597537	121598537	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45448.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.66970917277332	3.50353148727768	3.41216890023238	3.69050712923608	3.6816031319124	3.75817791975486	0.588096215758983	0.295781717060126	0.692654652514324
Merged-chr9-4380768-4	chr9	4380293	4381293	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145609, intron 1 of 2)	intron (NM_145609, intron 1 of 2)	4241.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	4.57397417971025	4.81627480350577	4.85478395484044	4.82544009851508	4.60683958834175	4.60975769239058	-0.151787521385266	0.712806028127707	0.92531822516521
Merged-chr14-8214849-4	chr14	8214341	8215341	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305936, exon 1 of 3)	5' UTR (NM_001305936, exon 1 of 3)	339.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	8.71000104824616	9.23683935138818	8.43685739376148	8.85197819876839	9.14888693091246	8.45000946055384	0.0119265637246576	0.967960537865032	0.992633833139547
Merged-chr2-6273563-4	chr2	6273061	6274061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-49196.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.20515750154136	6.35419341077624	6.05645187515499	6.21078029947384	6.47339206832618	6.22810411076816	0.163850888860341	0.572295171311936	0.869807909725036
Merged-chr18-68299322-4	chr18	68298821	68299821	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153794, intron 1 of 3)	intron (NM_153794, intron 1 of 3)	1012.0	NM_153794	108654.0	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	7.35493031571574	7.5266742322752	7.19334533916731	7.80494076626901	7.88231711611805	7.28845136642711	0.470331786997947	0.0806490491769643	0.37579918709284
Merged-chr10-8740350-5	chr10	8739794	8740794	+	776.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175155, exon 15 of 20)	exon (NM_175155, exon 15 of 20)	145776.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.04565260751962	2.9682081606158	3.25657248171285	3.34476821729276	3.18015154698977	3.38226098932392	0.905666764722215	0.162504259117409	0.53593556847568
Merged-chr4-59546903-4	chr4	59546414	59547414	+	879.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	2450.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	6.0019493033542	6.29368892576118	6.23919944057493	6.29543968185655	6.45101424584431	6.37719450338021	0.324911207115849	0.25125944701434	0.648731936769727
Merged-chr8-121591507-4	chr8	121591016	121592016	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026160, intron 1 of 3)	intron (NM_026160, intron 1 of 3)	1048.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	5.03573410680919	5.21725889016024	5.00098671685702	4.92205121968108	5.05721628214999	4.87960212461645	-0.279653184933315	0.456088954237037	0.811360279461309
Merged-chr7-4794548-1	chr7	4794048	4795048	+	1000.0	f1_balb.idr	TTS (NM_009081)	TTS (NM_009081)	1583.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	2.86319392261588	2.9177037348748	3.26423704729253	2.85293322610286	2.88742866894936	3.22947937007248	-0.116353366241748	0.871241211929713	0.970222087171093
Merged-chr13-95891245-4	chr13	95890711	95891711	+	916.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	711.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	7.97919521331773	8.32255820419661	7.73388212150092	8.1468552329877	8.47645332738746	8.05424053373703	0.284172907432584	0.280018902329141	0.677736555745337
Merged-chr11-51817255-2	chr11	51816755	51817755	+	860.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_199299, exon 12 of 12)	exon (NM_199299, exon 12 of 12)	40226.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.90043302776209	3.88164215160927	3.71007149946848	3.48222129701254	3.38760948214548	3.92776988986046	-0.760284816907811	0.1955738905444	0.583335565989834
Merged-chr12-79841531-4	chr12	79841033	79842033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83200.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.79360913119146	4.67775566932911	4.76396876663094	4.382310479532	4.44957542675103	4.67780024279784	-0.589796169015214	0.158149953665286	0.529828133211784
Merged-chr3-87351229-4	chr3	87350693	87351693	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6688.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.95456201614802	7.02793662688159	7.18456096561008	7.41226353491134	7.73644096125736	7.52355083455242	0.765947517309647	0.00163544340339436	0.0264639814672468
Merged-chr2-73463843-6	chr2	73463378	73464378	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9989.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.50430839057297	6.33391339614775	6.06507224259094	6.5070687777574	6.47500507624965	6.07887072287918	0.0894307740248741	0.769547765025531	0.943140664763387
Merged-chr10-42275461-6	chr10	42274912	42275912	+	982.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019740, exon 2 of 4)	exon (NM_019740, exon 2 of 4)	1330.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	5.93304897341169	5.85410702407904	5.60770658188892	6.00204447350127	5.86349467161218	5.86003690387636	0.167135806879516	0.589398899152592	0.87684682813475
Merged-chr3-52270083-4	chr3	52269609	52270609	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	1772.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	5.52790721925865	5.53399513942062	5.84466879897449	5.89169380397642	5.58183594787764	5.80986105017869	0.236308672993614	0.473499903640219	0.82090428702971
Merged-chr4-11579595-2	chr4	11579095	11580095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-67.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	6.05210043401906	6.26691412332308	6.10860665348146	6.02267159375635	6.23780211848196	6.33052607021793	0.0872244903170983	0.764577493021556	0.941979298344481
Merged-chr14-55822670-4	chr14	55822181	55823181	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	2.95539612035717	2.8182347473749	2.95399688047458	2.661074864604	2.50164795982333	2.65936122369176	-1.72210475376413	0.0264581830170417	0.193303406135921
Merged-chr16-11144119-4	chr16	11143622	11144622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 19 of 22)	LSU-rRNA_Hsa|rRNA|rRNA	-9590.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	5.33341746909084	4.87011768092835	5.46624977760163	5.17748268938989	4.65872257992554	5.93978044658695	0.265171781588504	0.728917368168128	0.930478966998914
Merged-chr18-73752199-4	chr18	73751692	73752692	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	2287.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	5.59160824324835	5.33670205069503	5.83729566161817	6.12219635269229	6.04559761729992	6.36850811189639	1.04076655543482	0.0014985022417097	0.0247003515309391
Merged-chr15-100461872-4	chr15	100461380	100462380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7131.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	7.32719720008546	7.33055834070967	6.85871751663158	7.6191267052146	7.79688613331401	7.32596600996291	0.590612339849995	0.0309087541757415	0.212778656197162
Merged-chr2-36234654-4	chr2	36234149	36235149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	MIRb|SINE|MIR	4223.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.57956353164574	6.33879288753651	6.19795313454515	6.69126481148876	6.56402640701827	6.47966627339318	0.311078260035958	0.266236042089589	0.664037906243532
Merged-chr10-80692966-4	chr10	80692431	80693431	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8889.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	8.11151357484245	7.88749290763745	7.637527374459	7.91818674582786	8.29356449852005	7.73022827151694	0.161368015181253	0.545733438421536	0.85834429351586
Merged-chr13-95887727-3	chr13	95887208	95888208	+	711.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	4214.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.48140257587798	6.14600123770459	6.16000213494579	6.04012142987869	5.80598727587783	6.22035029553606	-0.433076056555508	0.161704483575024	0.534841316980411
Merged-chr7-87925614-4	chr7	87925134	87926134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	341466.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	6.35272052902658	6.99977868542706	6.31199073565341	6.34429199389188	6.43840074127019	5.95535759820585	-0.539697155527884	0.114159027628703	0.451234828318327
Merged-chr11-106733994-4	chr11	106733465	106734465	+	865.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-17261.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	6.1753987041584	5.95786961330784	6.2167365488876	6.29756073492178	6.2655710418029	5.88870177735526	0.098226349714751	0.746498207148175	0.936300236930265
Merged-chr16-10500916-4	chr16	10500403	10501403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	MTEb|LTR|ERVL-MaLR	11122.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	3.15201005019977	3.2084560431901	3.51298039180037	3.67858982288221	3.33422995299211	3.82877772634513	1.23484840444607	0.0521930141280674	0.291977700656732
Merged-chr8-39619010-4	chr8	39618472	39619472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 5 of 9)	intron (NM_001113326, intron 5 of 9)	23706.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.33379817422595	5.73414872549991	5.66305711585644	5.79850279966243	6.17212463517733	6.0618573700726	0.781659470648689	0.0187429193228903	0.154918131620051
Merged-chr2-154614297-2	chr2	154613797	154614797	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199304, intron 1 of 14)	intron (NM_199304, intron 1 of 14)	929.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	5.81865925363819	6.15728857654153	6.07675707234152	5.45919963681133	5.68780069166581	5.74057683269171	-0.700243210103568	0.0290086225931393	0.204485722528798
Merged-chr15-66855391-2	chr15	66854891	66855891	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23562.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.95536994816104	3.54524941228044	3.89631333683198	4.0178712243876	3.52335492494852	3.65456132126144	-0.19394167699758	0.740271363400913	0.934501571762959
Merged-chr2-14242097-2	chr2	14241597	14242597	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	B1_Mus1|SINE|Alu	12683.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.68206567505322	5.51630017152541	5.9000369094505	5.78595275523133	5.81986981392041	5.89129389087107	0.241600531193416	0.446077205838502	0.805564548645935
Merged-chr9-13828829-2	chr9	13828329	13829329	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 2 of 9)	intron (NM_176836, intron 2 of 9)	1113.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	5.22651890719561	5.31153106820087	5.11519706234379	5.36369057246739	5.33050203713924	5.34493044100101	0.23699725779144	0.491288246439268	0.830448151501811
Merged-chr2-173276601-4	chr2	173276131	173277131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022995)	promoter-TSS (NM_022995)	-98.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	3.37578727826555	3.21335515528998	3.21185877235909	2.96571686001416	2.91160586964341	3.16890392122148	-1.15850009034301	0.083027957485583	0.381226701603597
Merged-chr8-36249521-4	chr8	36249018	36250018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-2.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	7.92634253101639	7.83305196390841	7.47467157275153	7.96417964613566	7.61890043849762	7.6993653307495	0.00389804659322017	0.987613507047141	0.997223245230291
Merged-chr8-126551914-2	chr8	126551414	126552414	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41522.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.87814030318786	5.70795526766485	4.95784763892576	5.28252485377708	4.98133880962219	4.85676727872923	-1.03729684300918	0.0160549680434259	0.139156482836757
Merged-chr4-41713021-2	chr4	41712521	41713521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027278, intron 1 of 1)	intron (NM_027278, intron 1 of 1)	496.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	5.47944120563294	5.6529715648004	5.2990336366404	5.78413450582483	5.37382714868801	5.76539138589333	0.283752704022413	0.420671693709352	0.789802348657862
Merged-chr19-42045989-4	chr19	42045481	42046481	+	910.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020033)	TTS (NM_020033)	130.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	4.37221384536182	4.58197483571382	4.33451664069792	4.26658505855714	4.14559395490408	4.26597666385326	-0.576917173409892	0.203416057537687	0.593383628879117
Merged-chr10-96706878-4	chr10	96706385	96707385	+	941.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89884.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.90250641431883	4.00983004031912	3.81494971892635	3.8912876367964	3.74159408227747	3.77990162752736	-0.353821080573904	0.494415534026433	0.832021999297633
Merged-chr10-10408342-4	chr10	10407846	10408846	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 13 of 36)	intron (NM_001127353, intron 13 of 36)	63968.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.98457429270401	4.10535353439296	3.97880365762681	3.77123064445725	3.83808301817447	3.9993827744837	-0.487996209651222	0.333686892022783	0.724517434137507
Merged-chr12-17545440-2	chr12	17544941	17545941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 1 of 11)	intron (NM_013614, intron 1 of 11)	568.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	7.77087216281445	7.71757962326261	7.47381862794343	7.56508719744615	7.42494438524743	7.07262243944478	-0.418599086271929	0.101389200094276	0.424664882786896
Merged-chr13-21362843-4	chr13	21362341	21363341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016684)	promoter-TSS (NM_016684)	21.0	NM_016684	22758.0	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	5.38172855190029	5.54491584045407	5.63451129089811	5.48144853701756	5.58589452789849	5.50329073785203	0.0175050243818204	0.95744595709299	0.98996830630481
Merged-chr5-122730661-2	chr5	122730161	122731161	+	824.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011026)	TTS (NM_011026)	23117.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.02772658016128	2.721914764528	3.00740818694405	2.86857163812229	2.88279439503681	3.24516356281889	0.371992411750741	0.607426881077168	0.884581207370863
Merged-chr13-5614392-4	chr13	5613884	5614884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243708.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.86449898779303	6.83461951389037	6.70143469552571	6.27610064189556	6.20920890150372	6.66578872062358	-0.670878494015976	0.0165407254280491	0.14230195042805
Merged-chr2-128774606-2	chr2	128774106	128775106	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	Tigger6a|DNA|TcMar-Tigger	-43697.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.15765624055334	2.89321510278068	2.89484208546316	3.21853224203756	3.35602557831367	3.2752608953591	1.2811594943666	0.0607316636118536	0.319202117310373
Merged-chr7-63908863-4	chr7	63908350	63909350	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8007.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.27593369270285	6.13629887875927	6.60692143184369	5.99137724036046	6.36787000965171	6.32239109597772	-0.173755624944493	0.573651905433334	0.870251558775855
Merged-chr17-27970420-3	chr17	27969923	27970923	+	689.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	61117.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.07342064602937	3.51379909560349	3.5948752154684	3.48794039796855	3.02109020101488	3.25408880280232	-1.83731067899929	0.00726969364210236	0.0803422325105662
Merged-chr10-22354362-4	chr10	22353762	22354762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7632.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	6.56867747570078	6.18164377791252	6.00870594472867	5.65599355732635	5.85493596144862	5.42277886377613	-1.06308234754369	0.00194325793791169	0.0302572242697897
Merged-chr11-62456889-4	chr11	62456345	62457345	+	827.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177229, intron 1 of 8)	CpG	487.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	6.88744800392751	6.59626832934452	6.58931640055742	6.95216781732209	6.3529586009317	6.66535256695136	-0.039613052715875	0.894546671486533	0.975576532925631
Merged-chr15-79446011-4	chr15	79445510	79446510	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3867.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	6.48149239572964	6.01184502482356	6.3110247739202	6.66235190757092	6.31665393434589	6.60344781258939	0.405704298835132	0.178980044992551	0.560334546758228
Merged-chr6-51509425-4	chr6	51508924	51509924	+	944.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14479.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.08983451028984	3.36274633409898	3.19902587135954	3.4190221731949	3.56386321448447	3.44538648066247	1.00019370582071	0.108718000296234	0.440527039920339
Merged-chr11-54087270-2	chr11	54086770	54087770	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13654.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	3.48661804413498	3.18343923957369	3.49093771942761	3.50131376980333	3.274490097035	3.22118000760708	-0.203192230484132	0.746498924714526	0.936300236930265
Merged-chr7-67426298-3	chr7	67425797	67426797	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53439.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.40173664241316	5.19739953508336	5.68152839862206	5.32391387639644	4.78987786364459	5.28003930808705	-0.579530482165686	0.144939439772975	0.507831616184637
Merged-chr3-30969882-2	chr3	30969382	30970382	+	819.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	-467.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	5.52399874319113	5.41918374938636	5.30264660699683	5.45986744745863	5.58974215175089	5.33417862863178	0.0972692136138164	0.773839241497125	0.944186409608656
Merged-chr15-27673292-4	chr15	27672777	27673777	+	925.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	8265.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.76139721834976	5.68928915876165	5.66938507126631	5.55737097469344	5.61242723455724	5.56560271159036	-0.238436692737774	0.445999742730523	0.805513451373278
Merged-chr15-89124004-2	chr15	89123504	89124504	+	649.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-854.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	3.00191418584671	3.2115006517064	3.02915833231835	3.0546910982816	3.04063154432777	3.48576608792846	0.493664548363088	0.470492031147322	0.819495618343931
Merged-chr12-41288761-4	chr12	41288253	41289253	+	732.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	197304.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.85542978549055	4.77502499408499	4.94984246082504	5.04870343640039	5.27532754115399	5.05045140531439	0.606232449380283	0.106671071761988	0.435916169724877
Merged-chr3-95527635-2	chr3	95527135	95528135	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021281, intron 1 of 7)	intron (NM_021281, intron 1 of 7)	849.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.42365419052678	6.55074250136048	6.47742573693981	6.75251566147208	6.73114900437591	6.75360387453178	0.41154303779301	0.106301343792491	0.435291447553427
Merged-chr15-99965316-2	chr15	99964816	99965816	+	855.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-4749.0	NM_001080948	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	3.31430872995286	3.11485723324216	3.58340026315323	3.12371273826436	3.0531432283047	3.17758399787797	-0.953907914460433	0.147876086340281	0.513113986330364
Merged-chr2-68860623-3	chr2	68860140	68861140	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-801.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.70957845797759	5.31292306161364	5.73476470466098	5.36506099433737	5.80348315994118	5.79614197830582	0.143824370120526	0.686791819911887	0.91687527626078
Merged-chr14-51250504-3	chr14	51250008	51251008	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5604.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.07548839453168	4.00937384012756	4.29058553666043	3.61505107593216	3.43843187409326	3.65382401401887	-1.86324372183013	0.000772722259047369	0.0147925532851638
Merged-chr17-31090004-4	chr17	31089494	31090494	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32300.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.95592577002931	5.93314293154879	5.84433003699471	5.28800154203697	5.34798663609863	5.24391621821539	-1.15259429426617	0.000337490020781306	0.00767683697352951
Merged-chr16-56031115-3	chr16	56030603	56031603	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1386.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	4.05821770682719	3.89030199560935	4.14708337526739	4.16969396478336	3.63985958566167	4.03075038425488	-0.212093596246571	0.693013631756057	0.918821916893121
Merged-chr17-53578462-3	chr17	53577966	53578966	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	RSINE1|SINE|B4	-5660.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	3.45117712371851	3.11016084018483	3.19631987856902	3.25741120718043	3.45462066934627	3.59846885429952	0.68682403101503	0.282549076827104	0.680451612659422
Merged-chr16-91424950-2	chr16	91424450	91425450	+	669.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008349, exon 7 of 7)	exon (NM_008349, exon 7 of 7)	18715.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	2.39826708669541	2.36015239554589	2.72453095660133	2.20795516639415	2.21828250469441	2.56245995693561	-1.03955259829199	0.243139098899321	1
Merged-chr1-63753925-2	chr1	63753425	63754425	+	797.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001256158)	TTS (NM_001256158)	15342.0	NM_001256158	74426.0	Mm.159197	NM_001256158	ENSMUSG00000025961	4933402D24Rik	-	RIKEN cDNA 4933402D24 gene	protein-coding	3.02886999495182	2.79947005880897	2.94666299281223	2.65865317684043	2.74640072111952	3.13142301856737	-0.347446870826521	0.642889978697021	0.899548231805501
Merged-chr3-115715591-3	chr3	115715195	115716195	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	-640.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.82494202423093	3.92987144521763	3.85105725744322	3.5201982291942	3.43591628488248	3.6660350875914	-1.15619954598883	0.0360331745338969	0.233417546642
Merged-chr19-5425600-3	chr19	5425086	5426086	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024176)	promoter-TSS (NM_024176)	442.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	7.12816845161516	7.06646444901619	6.78185898362725	7.44731879593773	7.5970032171439	7.00930220014579	0.563150103935356	0.042352035230185	0.257887167759476
Merged-chr13-113510167-2	chr13	113509667	113510667	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7323.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.02008585662225	5.71288003102795	5.1351279720108	5.34025706971158	5.62073877507556	5.3108762534629	-0.45998318587321	0.248006674394396	0.645121275572369
Merged-chr14-20694389-3	chr14	20693870	20694870	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028428)	promoter-TSS (NM_028428)	-598.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	5.1402207370852	5.42507335243551	5.36090259885627	4.91739516168464	5.27070459577678	5.45219802954597	-0.17314228622852	0.64642064661793	0.90099114147517
Merged-chr3-84228717-4	chr3	84228219	84229219	+	969.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7842.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	5.2317207749107	5.37977439588209	4.81913304482486	4.81401078622576	4.82009296576075	4.71947006118784	-0.839243446872022	0.0370022962273558	0.237207281307283
Merged-chr10-91029195-3	chr10	91028736	91029736	+	854.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 17 of 26)	L1MB4|LINE|L1	53507.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	2.28747659873387	2.51300355679361	2.54687104760959	2.09887473785549	2.04747508265588	2.16945870582335	-2.86519465747346	0.00536813442950074	1
Merged-chr9-118647645-2	chr9	118647149	118648149	+	646.049988	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	40940.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.37742282646756	5.46107194829812	6.03924774215765	5.42423143883362	5.36291277515658	6.01922294810232	-0.0429256735447063	0.914817758495777	0.980938755430376
Merged-chr10-37210466-4	chr10	37209940	37210940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-71514.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.48575804925788	5.61914141523916	5.75907204039043	5.46704437946803	5.54648151239223	5.5589244107971	-0.17733886612176	0.585076493995418	0.874807635442421
Merged-chr11-62574968-2	chr11	62574468	62575468	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	482.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	5.1746071709424	5.24402972992001	5.69084173259977	5.64933884812605	5.43017401540096	5.42794491481014	0.253767916285753	0.483270354194682	0.826119594918973
Merged-chr10-81137440-4	chr10	81136948	81137948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	CpG	1177.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	7.45866267592064	7.16713123128348	7.35320936825538	7.34609244183116	7.18247883041846	7.2998570964263	-0.0832102773763252	0.728707379048168	0.930478966998914
Merged-chr16-22443323-2	chr16	22442823	22443823	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3753.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	3.76859563041101	4.17814116528973	3.8632596344982	3.83141135320847	3.82332668026445	4.07771397549051	-0.138125474041141	0.795336433924032	0.951091875905472
Merged-chr13-9029905-2	chr13	9029405	9030405	+	717.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-33893.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	3.05297554877657	3.12234538279681	2.94484937504534	2.91447370339629	2.68681699094694	3.01796264503652	-0.829090163935607	0.247682341575033	0.6446647234201
Merged-chr10-57842009-3	chr10	57841502	57842502	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47458.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	2.63435578617595	2.45703723022038	2.69728278409176	2.62887033917965	2.6547452412567	2.88856522513258	0.704237045162977	0.360656320596354	0.746865522434367
Merged-chr8-13213579-4	chr8	13213018	13214018	+	755.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12894.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	3.62239847390289	3.55107794009109	3.37626190954523	3.3568416111184	3.34090796230396	3.27052617199254	-0.766474514280773	0.202075384585426	0.591773948258361
Merged-chr10-20667362-2	chr10	20666862	20667862	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	57716.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.28384734048296	3.41517867330584	3.56116172224802	3.33092026569204	3.36041659332055	3.36411531761607	-0.260329484399471	0.663930672801238	0.907439161928906
Merged-chr1-127786052-4	chr1	127785554	127786554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	11890.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	4.73451775521758	4.76032065006414	4.76102200939681	4.97959672017191	5.09621988899798	4.86625449750016	0.536202350115791	0.162820153380665	0.536188662408322
Merged-chr7-27538461-2	chr7	27537961	27538961	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14757.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	4.11094260029671	3.86672093274137	4.29727756472843	4.0842876113113	4.19166900633189	4.32182505613836	0.296240993257967	0.547988514463465	0.859456555901125
Merged-chr6-120172046-2	chr6	120171546	120172546	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-21777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.41504080704951	4.22030557684854	4.16294812171943	3.88858021240585	3.54533690707669	3.83392492416105	-1.5915691190806	0.00260529422696282	0.0378260900431202
Merged-chr6-54943618-2	chr6	54943118	54944118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 4 of 12)	exon (NM_172729, exon 4 of 12)	28043.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.65918740122066	3.5395810623989	4.04217978374404	3.72690725676857	3.46511047603145	3.88554141904435	-0.196090599317295	0.738039277795215	0.933858424870961
Merged-chr19-56740332-4	chr19	56739826	56740826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17954.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.30520844694984	5.16798697648672	5.1657919179369	5.15226664750329	5.36161836463496	4.97884409325876	-0.0588632196371853	0.872652068106542	0.970261003150518
Merged-chr11-98937175-3	chr11	98936681	98937681	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-515.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.55380560777754	5.98185057525377	6.46497613668732	6.58386630940749	6.34761386935858	6.27731388235378	0.0938433434339321	0.763693799102744	0.941793063578371
Merged-chr14-31435324-5	chr14	31434851	31435851	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 1 of 8)	CpG	749.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.84217906286802	8.1319513734172	7.85818042938711	8.08090362115269	8.26805108598987	7.93055051961647	0.214826571362474	0.357004648069912	0.743663606373794
Merged-chr1-33906263-4	chr1	33905772	33906772	+	859.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	1349.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.21097178314354	5.27968028601635	5.46162148807955	5.27403609716658	5.42553460698878	5.40878395346916	0.116589614178466	0.734225180394119	0.932325247378737
Merged-chr9-66895088-2	chr9	66894588	66895588	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24617.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.23387586016164	7.46585731750022	7.07816461534902	7.04838021622392	7.49925758498847	7.21236122238167	-0.00261012983663394	0.992199882996264	0.998427455457837
Merged-chr7-127288144-4	chr7	127287634	127288634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	5.72630076597601	5.66109975616852	5.70115079134948	5.92893179316041	6.02873160726219	5.84135013729643	0.440534862446079	0.144940140778756	0.507831616184637
Merged-chr5-122642772-1	chr5	122642272	122643272	+	544.0	f1_balb.idr	Intergenic	Intergenic	-1139.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	2.10163212637725	2.03773063730606	2.15843344947606	2.37246930368421	2.10758627005152	2.36633481921335	1.35480773358385	0.135443478815502	1
Merged-chr8-13157343-4	chr8	13156842	13157842	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1819.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	5.52753962591764	5.22472131960782	5.40814119393508	5.65217241978543	5.73402838930844	5.93771563155079	0.715762697317457	0.0322445662256336	0.218166032403848
Merged-chr13-98261849-2	chr13	98261349	98262349	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178918, intron 1 of 12)	intron (NM_178918, intron 1 of 12)	1143.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	4.66144409719212	4.74578892400666	4.89489549120255	4.7974168851542	5.00981166098132	4.92391511400266	0.345150111991062	0.378220981665248	0.760555147354985
Merged-chr9-85331726-4	chr9	85331230	85332230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4580.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.46006314805334	5.16050591332401	5.46613904964155	5.28276531835854	5.39669006652162	5.66164504926393	0.163053675582192	0.646233513891668	0.900956691585509
Merged-chr11-55078021-1	chr11	55077521	55078521	+	758.0	f0_balb.idr	exon (NM_177471, exon 1 of 7)	exon (NM_177471, exon 1 of 7)	110.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	5.70555779131354	5.77495862296948	5.83921343115733	5.57759142632085	5.39664596259369	5.82896522639715	-0.318083795977905	0.332018515561929	0.723304009500642
Merged-chr13-42051299-2	chr13	42050794	42051794	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-727.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	8.44802187545288	8.33501125807601	8.10681059491418	8.27561663139665	8.54360257041214	7.99790006381589	-0.0119792160179727	0.961337793185508	0.99051531523293
Merged-chr5-100583309-4	chr5	100582803	100583803	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11098.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.07317498351525	4.28572581066547	4.34438589559696	5.06051689466305	4.97568349326364	4.51427969445945	0.549075795712932	0.282522475313454	0.680451612659422
Merged-chr18-50130938-1	chr18	50130438	50131438	+	551.0	f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2737.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.92978356739825	4.63813483592115	4.6772313646844	4.95003678237249	5.18317543199061	5.24286759811498	0.805768481513933	0.0410613426788967	0.252875370263599
Merged-chr10-71346871-4	chr10	71346367	71347367	+	859.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-896.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.03417358750544	4.77505579606933	4.52651162171406	4.90364405432601	4.45267016937051	4.45720055013344	-0.415332318775065	0.359093267071156	0.745343050659493
Merged-chr10-80248240-2	chr10	80247740	80248740	+	802.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	ID_B1|SINE|B4	-1212.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	3.00451820343892	3.18580962469549	3.20910886728879	3.05629067199223	3.09136343894265	3.27998894986178	0.0312058408734535	0.961756312351528	0.990671368065669
Merged-chr11-111165162-4	chr11	111164703	111165703	+	940.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99039.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.83881299733647	5.15990003576079	5.24282917438168	4.77662818502536	4.97653961464965	4.98083182287233	-0.367381035451328	0.347516371838154	0.735629954917807
Merged-chr7-19563242-2	chr7	19562742	19563742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199149)	promoter-TSS (NM_199149)	-844.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	5.24626532893584	5.28070487641183	5.15627020538043	5.29029342228002	5.46449337029894	5.31965192959886	0.264547599325946	0.442617613363147	0.803309406781703
Merged-chr7-30280912-4	chr7	30280420	30281420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-499.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	8.24259845070365	8.15391884402042	7.93293608001952	7.70382900516527	8.0149321432484	7.54879511318141	-0.483342561942787	0.0497459516169751	0.283690845812569
Merged-chr7-43313257-4	chr7	43312751	43313751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	49.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	6.93185427635208	6.85511565459145	7.0066511141174	6.92330263556063	6.93188116903668	6.85565619344886	-0.0338760867604582	0.889020726422133	0.974207858658472
Merged-chr9-37247623-4	chr9	37247109	37248109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8129.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	7.36156291705442	7.38081153332776	7.23614238700511	7.15883594229793	7.46161054106793	6.90320522409619	-0.1813437990852	0.49193478492192	0.830836346741775
Merged-chr15-4727092-4	chr15	4726605	4727605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016704)	promoter-TSS (NM_016704)	-105.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	6.6742126648058	6.73782099697417	6.60987801188135	6.78667886940584	7.00995063741982	6.28005131190562	0.103482310483954	0.730975266952812	0.931239703778815
Merged-chr3-37348541-4	chr3	37348068	37349068	+	758.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008006)	promoter-TSS (NM_008006)	-85.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	2.32498627971354	2.25752143436434	2.5056737058652	2.28501483706176	2.36705916569708	2.45501809941215	0.0446677513289582	0.957199795774771	1
Merged-chr13-23524818-4	chr13	23524308	23525308	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6236.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	2.23494967499257	2.131605167936	2.14656316498301	2.38508780252115	2.16347853734518	2.48511005242958	1.19715473613873	0.178769583218391	1
Merged-chr14-73119141-2	chr14	73118641	73119641	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23369.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	2.94731992189704	2.9009779349127	2.96011045234608	3.01489838283126	2.99366164578938	3.03251059921916	0.366150296980986	0.583816447781335	0.874225271981634
Merged-chr14-31439638-2	chr14	31439138	31440138	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3538.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	2.18884326175399	2.42641131451227	2.29088613963059	2.40913943749927	2.23273571139195	2.49524838705214	0.468053030769123	0.586543879206517	1
Merged-chr1-58733740-2	chr1	58733240	58734240	+	643.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009805)	TTS (NM_009805)	3188.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.56786487403043	6.54945200677934	6.49783849569183	6.54949508183852	6.69945083683558	6.59215755163096	0.124792541452585	0.628590587811812	0.893783616313365
Merged-chr18-20749134-2	chr18	20748634	20749634	+	665.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2730.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	4.6932999608796	4.91949117837505	4.61030055100039	4.84780851556806	4.90966297023783	4.54579574971876	0.0746269223274365	0.85851433081982	0.966933063363181
Merged-chr2-31075363-4	chr2	31074877	31075877	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	21123.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.36311826656859	5.44160374637337	5.34386742063139	4.69565726985932	5.08605858034816	4.81419757988332	-1.02940485165739	0.00730311821396618	0.0806271098231485
Merged-chr5-34514020-4	chr5	34513505	34514505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-26.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	8.0553222721838	8.24443889889023	7.7410038008314	8.02975010927069	8.07760866620738	7.51976278200423	-0.182367626945444	0.499170897135948	0.834304435338421
Merged-chr17-86971119-4	chr17	86970628	86971628	+	804.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8017.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.8940070788567	5.74987637823088	5.85990750931245	6.04035112715412	5.73697761007513	5.99157248589792	0.155603021649579	0.613951372089272	0.887338990172734
Merged-chr18-88911070-3	chr18	88910566	88911566	+	791.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16859.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	2.78146148340434	3.05886878016515	3.10009751163492	2.98476131853201	2.81521559790762	2.87632051012526	-0.441355679177355	0.533668571980328	0.85253162296083
Merged-chr10-82857862-2	chr10	82857403	82858403	+	865.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042523, intron 1 of 14)	intron (NM_001042523, intron 1 of 14)	-1303.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	4.95622041594839	4.71846383483484	5.0018042418953	5.2854101029869	5.28060810901881	4.87979082201654	0.59733593178955	0.125988547599668	0.474743679619431
Merged-chr12-111441813-4	chr12	111441297	111442297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-864.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.25053758777435	8.31166180050286	8.0713651738525	8.03499794438089	8.4577148088229	8.16218998220781	0.0246379091278557	0.915817836225827	0.981201223155309
Merged-chr2-103801280-3	chr2	103800778	103801778	+	886.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3638.0	NM_016739	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	4.39398687749448	4.21828773951859	4.48575038081902	4.87009137508722	4.9745053999949	4.83340264384677	1.29136643456698	0.00194938480039014	0.030341266455455
Merged-chr5-140138223-3	chr5	140137720	140138720	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	36698.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	3.92900909192019	4.0149724783942	4.58413017781525	4.06571702683377	3.44316906615838	4.04940895222943	-0.92813242833528	0.125276984133045	0.473596443106615
Merged-chr8-13674887-4	chr8	13674411	13675411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	2676.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.75618103504023	7.5319267850237	7.60139564971468	7.59810962917286	7.85363606460015	7.75694698311733	0.157169596791473	0.492926159764669	0.831208279358962
Merged-chr15-78984599-2	chr15	78984099	78985099	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	1543.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	2.28887071951564	2.1830656304801	2.55435773798317	2.56703506852305	2.3523743945423	2.56670392923429	0.946716384653031	0.272613227282254	1
Merged-chr14-47373213-2	chr14	47372713	47373713	+	650.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	-647.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.10670356603333	3.39692853478025	3.60570899138262	3.80015199823327	3.49314038371622	3.93473558423702	0.0253530041255425	0.967770128860545	0.992594535508871
Merged-chr19-37448438-4	chr19	37447927	37448927	+	894.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13586.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	5.77998951809021	5.66762202308984	5.15615046748154	5.99214169241611	6.02300601663732	5.62724623169348	0.584528788907818	0.108145942378757	0.439299334771121
Merged-chr2-35162059-3	chr2	35161564	35162564	+	818.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 30 of 44)	exon (NM_012018, exon 30 of 44)	29830.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	5.80483783092055	5.45762894610495	5.287716149498	5.41932704414413	5.48427416219375	5.38492224090239	-0.214895589892069	0.542293465486783	0.857067349203709
Merged-chr16-28517956-4	chr16	28517483	28518483	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46512.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	3.72934038594582	3.84139606207429	3.52973744175625	2.95018345020009	2.91443524423167	3.06227763777944	-3.61783085257163	4.7226175282798e-06	0.000210928373211544
Merged-chr19-6306558-8	chr19	6306027	6307027	+	986.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	70.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	6.6604869632252	6.5093633543606	6.51479981725632	6.65276913618665	6.23993521040053	6.10727952279689	-0.331313643990727	0.263435909962872	0.661383847170923
Merged-chr4-130912382-4	chr4	130911895	130912895	+	901.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-939.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	5.2204327937075	4.86640459219424	4.94327564271153	4.9408513428388	4.90212381132006	4.64860350708337	-0.388192744784428	0.332819398388387	0.723873709415294
Merged-chr5-122770984-3	chr5	122770491	122771491	+	948.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	8419.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	4.68700455621434	4.37869130407354	4.80621088964331	3.75649247798428	3.69836227678305	3.907370638844	-2.4920936101015	1.93784303138944e-06	9.68432690425539e-05
Merged-chr7-19361942-4	chr7	19361450	19362450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	734.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	5.42816393035136	5.45662116027725	5.23949592207607	5.34575736514225	5.83731769201856	5.37061232855979	0.323395179662994	0.373362582175993	0.757263954605729
Merged-chr11-94352255-2	chr11	94351755	94352755	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	intron (NM_029600, intron 26 of 30)	24254.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	2.39054318727081	2.31715320105899	2.54272834708251	2.2565204848885	2.17416091740212	2.73427636817093	-0.0486659861358592	0.956641472676122	1
Merged-chr5-137748720-6	chr5	137748277	137749277	+	872.013916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	2808.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	5.14819832054201	4.73574991977669	5.014512518225	5.12859295405264	5.0502743496895	4.81674699467868	0.0767923412667206	0.846546571499993	0.964033094055515
Merged-chr14-30760745-2	chr14	30760245	30761245	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	45130.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	6.16762394105204	6.02040864342669	5.85121944044611	5.63324350341186	5.47976888346574	5.70625876826025	-0.766321190183497	0.0145126914917934	0.129720918858003
Merged-chr11-32540567-2	chr11	32540067	32541067	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	(GGGTG)n|Simple_repeat|Simple_repeat	7301.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.49488053443265	5.73794052693794	5.91883694939485	5.62018296906222	5.56815848969414	5.39797596970282	-0.338165311099708	0.314142903123156	0.708571501303105
Merged-chr10-125325301-4	chr10	125324810	125325810	+	865.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	3653.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.35158780669054	6.1958168540459	6.03988733478932	6.04377150927758	6.05495003314195	6.00763466813266	-0.293509285552596	0.31045700256957	0.705829393476587
Merged-chr4-34495486-2	chr4	34494992	34495992	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	ID_B1|SINE|B4	-55123.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	5.11317173910883	5.19431739164388	5.42381161589846	5.00291937740564	5.3550778497667	5.54017646738075	0.14253167615262	0.70460273925589	0.922488097794635
Merged-chr13-89384848-4	chr13	89384334	89385334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-155802.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	6.92682053743853	7.09988360776088	6.45438102207767	7.95893829925098	8.34366224232823	7.54236954249504	1.65513774017116	1.914698248227e-07	1.26543456583378e-05
Merged-chr6-94054128-1	chr6	94053628	94054628	+	553.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-140438.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.62001961317444	2.57211696110246	2.60750087719479	2.43768363481599	2.32325053475079	2.35614738190382	-1.46061810955151	0.0776167296842659	1
Merged-chr6-39118228-4	chr6	39117686	39118686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045813)	promoter-TSS (NR_045813)	163.0	NM_172893	243771.0	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	7.73334444874188	7.67550087579726	7.59663378557111	7.60203364723747	7.51744166355932	7.7168663610254	-0.0910927391671407	0.681485866985249	0.914693263933768
Merged-chr1-91187038-1	chr1	91186538	91187538	+	680.0	f1_balb.idr	intron (NM_001168392, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	7216.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	4.15634124799127	4.16292357879649	4.05044622651486	4.04127344612618	3.77774019796185	3.69727404655766	-0.835379358443631	0.105660640883554	0.433764288115161
Merged-chr3-136490382-1	chr3	136489882	136490882	+	543.0	f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-41033.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	2.6755161613309	2.66585361804956	2.6110636307389	2.71720503728919	2.66909869906741	2.92874351347882	0.632122625429747	0.396340824057286	0.773621883885586
Merged-chr9-49057668-2	chr9	49057168	49058168	+	917.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012039, exon 2 of 16)	exon (NM_012039, exon 2 of 16)	2087.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	2.94147730038028	2.95571485150471	2.92674459826633	2.91074099178213	2.99761885838462	3.33561355252311	0.662155471262309	0.338699822217161	0.728588578553954
Merged-chr15-89314676-2	chr15	89314176	89315176	+	725.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081030, intron 1 of 39)	CpG	635.0	NM_001081030	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	4.91252561615387	4.73214695734082	5.07352673337804	4.74898407375842	4.37650367045245	4.67629992496818	-0.705318463819469	0.0954146536656415	0.411744762068805
Merged-chr2-143945595-2	chr2	143945095	143946095	+	640.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30264.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.10059604157659	2.7423953203647	2.80124304052715	3.07227636262098	2.69752590526953	3.23122562008777	0.567578444001034	0.459029303293486	0.813367198373994
Merged-chr11-93988689-3	chr11	93988170	93989170	+	743.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7421.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.37664215401527	6.46325105104673	6.25071858483207	6.29976551669526	6.37444063920998	5.77542073132366	-0.295372911250141	0.346974607172787	0.735156424771677
Merged-chr4-129701674-4	chr4	129701173	129702173	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4828.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	4.32301789146722	4.30319015215212	4.377940961986	4.83280387228975	4.43783498480538	4.49009578191678	0.670559894627961	0.131534576269957	0.484880782485849
Merged-chr3-121494225-4	chr3	121493726	121494726	+	953.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	38118.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	5.80572136222105	5.75103039652006	5.58555341211708	6.45806094672134	6.71088778129486	6.10223280134599	1.25188062219782	8.97433700320213e-05	0.00259013747264115
Merged-chr2-130906473-4	chr2	130905964	130906964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009730)	promoter-TSS (NM_009730)	-31.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	5.64936199385154	5.28355929412642	5.55928527977057	5.34689161812653	5.0591450567311	5.05522477001245	-0.678977249185735	0.0624920853435922	0.324929165610799
Merged-chr10-120698755-1	chr10	120698255	120699255	+	575.0	f0_balb.idr	Intergenic	Intergenic	-66977.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	2.98904834781921	2.94019887225334	2.77773622666644	3.14365861337805	2.98119025018297	3.1020885530435	0.764390821069269	0.271108591559611	0.668361183862025
Merged-chr4-34551362-7	chr4	34550872	34551872	+	952.0979609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	intron (NM_001007589, intron 1 of 4)	757.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	7.27932752451327	6.83360150243612	6.83605665461824	7.24664815792786	6.72257431861156	6.9673365221525	-0.0169654920141185	0.953775969058022	0.989446911725587
Merged-chr16-36633265-4	chr16	36632770	36633770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32807.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	8.09425334767654	7.90666016955097	7.85548323220158	8.10422100666783	8.16156225792405	7.63131400943931	0.0523246316684696	0.833667121540599	0.961104751385188
Merged-chr5-137817657-4	chr5	137817150	137818150	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360023, intron 13 of 16)	intron (NM_001360023, intron 13 of 16)	18628.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	4.61960714797217	4.56995689997088	4.20192995981804	4.31708044484212	4.33041870825732	4.41191730909682	-0.350486018764384	0.44064730639709	0.801899568428582
Merged-chr8-84872200-4	chr8	84871763	84872763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168244)	promoter-TSS (NM_001168244)	5.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	6.42028806029197	6.69402556678652	6.51754316264075	6.42488672282399	6.41904736718799	6.25009358069676	-0.289386711249139	0.290874759704212	0.688664305177637
Merged-chr14-63447168-2	chr14	63446668	63447668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	10774.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	5.73612740188001	5.86645965282298	5.67651146341613	5.5451070192292	5.57371917876449	5.54289505413521	-0.391786794174711	0.212991029604981	0.605651677561833
Merged-chr18-30507736-2	chr18	30507236	30508236	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234871.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	6.29739688234876	6.44842076393198	5.96953418203328	6.68477517056293	7.10262977165186	6.2269248807116	0.75571406832377	0.0277786081080807	0.19891587120974
Merged-chr8-56370816-3	chr8	56370312	56371312	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76260.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	2.52243049526191	2.41432063493908	2.85151509916382	2.59823333606773	2.37596434028726	2.62872881629548	-0.387770008832496	0.636739235292505	1
Merged-chr19-4303148-2	chr19	4302648	4303648	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3074.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.60577523745494	4.6784569649456	5.20976238912711	5.1528222645095	4.93404313743576	5.33049455648565	0.636387544764724	0.132903602101481	0.487807084520124
Merged-chr10-77531119-4	chr10	77530621	77531621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	773.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	7.67209512737175	7.64685041686818	7.46393419789173	8.06546664728861	8.14091449426735	7.15355266031441	0.386948422133548	0.213686494361205	0.606840471768162
Merged-chr11-54113057-4	chr11	54112557	54113557	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136076, intron 5 of 15)	intron (NM_001136076, intron 5 of 15)	12133.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	4.53519940368911	4.49182568070645	4.07280120197976	3.81683495722482	3.85551022734543	3.70159609505165	-1.73929706566713	0.00101864708307336	0.0182750294282812
Merged-chr9-36768248-1	chr9	36767748	36768748	+	825.0	f0_c57.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-670.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	8.50234501253273	9.19649994275522	8.48801610111733	8.81828814396934	9.20666174050135	8.49739327442063	0.13557737645961	0.651097231162563	0.902735752871093
Merged-chr8-105758666-4	chr8	105758167	105759167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027469)	promoter-TSS (NM_027469)	-60.0	NM_027469	70575.0	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	3.46062907952626	3.49454773922637	3.26788980796546	3.62125851645851	3.34955725866542	3.40086294328639	0.168037000599686	0.781048998650681	0.946145838976425
Merged-chr6-120077183-3	chr6	120076688	120077688	+	941.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-16192.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.65945934787531	3.35754609756806	3.42347657787655	3.46503938561117	3.41909063265614	3.13030533890532	-0.516256916046904	0.416907874003162	0.787748265777758
Merged-chr15-81466220-4	chr15	81465726	81466726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019712)	promoter-TSS (NM_019712)	-90.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	6.69830880547067	6.59766629080609	6.70417305156302	6.7191699177113	6.64494225269436	6.69958634185592	0.033351803094668	0.894770919704265	0.975576532925631
Merged-chr10-80510500-4	chr10	80509978	80510978	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	15572.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	4.74668417684745	4.61638954963465	4.20414940151512	4.7157038110129	4.42298290122339	4.22403791394764	-0.189132944576606	0.695463688297531	0.919289041383579
Merged-chr16-38679065-4	chr16	38678573	38679573	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	RCHARR1|DNA|hAT-Charlie	33962.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.30238432951597	5.59128836071245	5.40246210922018	5.17249236244605	5.79861097375017	5.78898625678934	0.339555691230455	0.364451506330043	0.749825494229833
Merged-chr15-58260779-3	chr15	58260288	58261288	+	944.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45896.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	6.19488739542926	5.95071902015916	5.55044269156584	5.32102605582858	5.47276708763888	5.2552081816569	-1.06368449302064	0.00280532867389459	0.0399770146082242
Merged-chr16-33400385-4	chr16	33399876	33400876	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358569)	promoter-TSS (NM_001358569)	-69.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	5.27857937398713	5.37748252960631	5.09836855311619	5.25718862831677	5.1402167458008	4.98007699706622	-0.263758894517197	0.468345584370083	0.818547995183628
Merged-chr10-96374384-4	chr10	96373885	96374885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	148178.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	8.17898929777712	8.28733692430891	7.94216293872994	7.91676702744208	8.32051026553474	7.85959511508745	-0.128768415338612	0.604273058763189	0.883017336250368
Merged-chr11-120349040-4	chr11	120348540	120349540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313923)	promoter-TSS (NM_001313923)	362.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	8.8399692390091	8.80701755447346	8.54762095255993	8.69672207770443	8.87122400364261	8.71363734231496	0.0314091445108854	0.881438722575248	0.972741362211746
Merged-chr1-127836811-4	chr1	127836299	127837299	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011737, intron 2 of 9)	MLT1A0|LTR|ERVL-MaLR	3491.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	3.50960029965431	3.3093768076285	3.41048611673841	3.70220435168639	3.60950167833467	3.69913859557404	0.927047052439997	0.106021342656491	0.434594013486444
Merged-chr19-23135612-4	chr19	23135114	23136114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5612.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	8.54736308167335	8.935859664626	8.37455687727647	8.60401199258328	8.9316393602961	8.66445057045964	0.133831551893597	0.588040914592531	0.876182349656829
Merged-chr17-74395553-4	chr17	74395037	74396037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-71.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	6.67935150717479	7.04858350232547	6.73391580612955	6.85321624880589	6.83604659208654	6.60890316126978	-0.0932322257327749	0.730341775022992	0.930874475990888
Merged-chr5-72262660-2	chr5	72262160	72263160	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59317.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	7.26563593147875	7.41518841397108	6.69659686329834	7.02075194086613	7.46996966042851	6.88781564915374	-0.0156267380993464	0.96039071234943	0.990380695859216
Merged-chr10-17623925-1	chr10	17623425	17624425	+	661.0	f1_balb.idr	Intergenic	Intergenic	-99303.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.61407949481194	4.57639906302802	4.6855838269747	4.87378021024375	4.7383185300383	4.58766803722023	0.285179037547737	0.484046141503255	0.82665199605554
Merged-chr3-9897218-4	chr3	9896711	9897711	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-63532.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.10004963861227	4.18282990571146	4.10671291685317	4.07318290887417	4.08040485775981	4.22063859881092	-0.0304375685248318	0.948591010129768	0.988151190239158
Merged-chr6-37615274-4	chr6	37614795	37615795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85122.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	4.58129086964225	4.80224499957562	4.61204170223953	4.60522333155369	4.78124463671624	4.75785370179963	0.105234751893963	0.797055996967399	0.951622622008858
Merged-chr2-90465438-2	chr2	90464938	90465938	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	intron (NM_008982, intron 5 of 23)	13736.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.45299296014133	2.47960085295125	2.66202062391737	2.3791570069744	2.34278795840779	2.55282312756789	-0.662395633329008	0.414092650714838	1
Merged-chr6-97400133-2	chr6	97399633	97400633	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	59153.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.62039205633689	4.62112589640154	5.19682079054854	4.55846558571609	4.71819420231717	4.88082684630567	-0.244895462142811	0.579869636360691	0.872644657556124
Merged-chr8-126517357-4	chr8	126516861	126517861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42296.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	5.77246992053053	5.95100971766546	5.90128293892176	5.7763341727449	5.76194693759251	5.73769361997829	-0.209276693765295	0.489599065600309	0.829773485629593
Merged-chr11-54869400-2	chr11	54868900	54869900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008248, intron 1 of 2)	ORR1B1|LTR|ERVL-MaLR	3017.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	2.47365656221144	2.53700451832148	2.72532892867234	2.58533636161646	2.29908525948716	2.67853685376597	-0.30560230429659	0.711105112004774	1
Merged-chr4-117288141-4	chr4	117287654	117288654	+	807.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310730, intron 2 of 10)	MIRb|SINE|MIR	1301.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	5.66059696883921	5.44892009829733	5.80169707799087	5.38206493312249	5.55352353922645	5.81535263832993	-0.092075231423448	0.787875269318575	0.94877064431094
Merged-chr1-191180084-3	chr1	191179509	191180509	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3324.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.10938809173387	6.23913486202149	5.84324619161331	6.25286107543323	6.41132714134041	6.16970825134683	0.34027142627012	0.254117559432719	0.651179145391095
Merged-chr12-37255621-4	chr12	37255128	37256128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	13989.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	3.87983466988787	4.14353185450685	3.87389097627993	4.09035663305221	4.12111529916888	3.9442291784861	0.238513697895416	0.636539463592909	0.897197812898308
Merged-chr9-110460081-2	chr9	110459581	110460581	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	16613.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	6.18149858088725	6.41284454334718	6.70458433388593	6.23483127028167	6.46913758188334	6.91452439441611	0.193594565247353	0.551278104864708	0.861115255581719
Merged-chr12-102695543-4	chr12	102694991	102695991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9378.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	7.10113023388453	7.42153708350305	7.53408826539762	7.41431495848576	7.82965630753316	7.4081229270422	0.312730209703229	0.241765407819562	0.638831884847573
Merged-chr1-180811250-4	chr1	180810732	180811732	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 2 of 3)	intron (NM_008210, intron 2 of 3)	2373.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.27069856002284	4.46386868985503	4.27694170970445	4.59435889568949	4.55796619009071	4.52352903083271	0.542361629688383	0.212050199758882	0.604420229358776
Merged-chr13-36534342-4	chr13	36533854	36534854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	intron (NM_001039189, intron 5 of 5)	200123.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	5.90433816289504	5.89618417345294	5.80631285918886	6.32360421969093	6.02207180553999	5.91947193456786	0.400212549576063	0.1903190629851	0.576590882682112
Merged-chr16-91685729-4	chr16	91685218	91686218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3010.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	6.29376482252442	5.8894789443829	5.94370457484749	5.47398491120697	5.69954356706333	5.55752216044292	-0.846640892687861	0.00973768569108561	0.0986790099846366
Merged-chr11-61931202-2	chr11	61930702	61931702	+	944.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-945.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	7.14526692793097	7.17121904952306	7.25013151107879	7.00999355531506	7.31959923467112	7.26180705271534	0.0286482328131956	0.90604316198621	0.978576016264467
Merged-chr1-4858944-2	chr1	4858444	4859444	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159751, intron 1 of 9)	intron (NM_001159751, intron 1 of 9)	616.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	3.86463330788941	3.81315671808067	3.60917894374118	3.81793259559668	3.80168581154273	3.8924700769055	0.195592791762402	0.712035900223321	0.924891945289204
Merged-chr16-10963118-2	chr16	10962618	10963618	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30003.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.94636813812849	4.01101243526946	3.91987981015178	4.25008655929022	4.17784327809948	4.13744769323919	0.66437435985579	0.16650339802288	0.541826478610469
Merged-chr2-78869799-3	chr2	78869291	78870291	+	973.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151458, exon 1 of 7)	non-coding (NR_151458, exon 1 of 7)	113.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	6.40319392319081	5.8226403072573	5.89841983338173	6.17846008140342	5.76949236594763	5.69338071955811	-0.299861902949965	0.394860772605022	0.772579826044138
Merged-chr2-12033935-4	chr2	12033362	12034362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256109.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	4.79349279066601	4.66194417653728	4.25322986117389	4.25449481681609	4.19351702342888	4.32315763836303	-0.889167452964338	0.0554480003854571	0.302796955835999
Merged-chr15-81810975-4	chr15	81810488	81811488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	-426.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	8.28478699857019	8.44538324567129	7.96568957707477	8.26107293794967	8.41645369988898	8.02936484066209	-0.00370493298979065	0.987916607043266	0.997263854458883
Merged-chr1-33912756-4	chr1	33912254	33913254	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	4529.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.90768351359717	5.09220607633334	4.97908741661442	4.41725244241197	4.80915391362252	4.97459353272261	-0.548414327491916	0.188451170327381	0.574088195819019
Merged-chr10-80431975-2	chr10	80431475	80432475	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 1 of 18)	intron (NM_001164153, intron 1 of 18)	1678.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	2.86413207274847	3.15082993410833	3.25317476847768	3.03377117850098	2.74608686933757	3.27055141816368	-0.294561430754717	0.687947833620372	0.917193226920892
Merged-chr12-100839433-4	chr12	100838925	100839925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	60099.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	4.44433669183948	4.9109661537246	5.0637333007135	4.85809564841055	5.17152045793027	5.25178180494739	0.599864895448242	0.160625733908964	0.53337460660229
Merged-chr11-117800006-2	chr11	117799506	117800506	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 2 of 5)	B2_Mm2|SINE|B2	2346.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	4.28926049825142	4.04748099620464	3.98885198410651	4.15068175476939	4.00945538349389	4.107964277503	-0.0958323747880768	0.844373938875022	0.96373428957366
Merged-chr7-27160034-4	chr7	27159516	27160516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 2 of 4)	intron (NM_001357767, intron 2 of 4)	5712.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	2.85657907217051	2.63655065764173	2.96190326449972	2.86996453107792	2.78372084524259	3.30511720483727	0.846602883961469	0.261675828883696	0.659457534066706
Merged-chr12-99614548-2	chr12	99614048	99615048	+	631.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	13426.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	4.44787812546061	4.26680412085689	4.53191534846048	4.98009198715813	5.12812388950819	5.32613062454677	1.69550435184821	3.9807951754e-05	0.00130374239656904
Merged-chr13-56704171-3	chr13	56703684	56704684	+	806.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	516.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	5.83765547235952	5.46957709715356	5.4109307989181	5.55624125028735	5.56109627221865	5.31252727562826	-0.19891073269392	0.569501692438394	0.8688875602138
Merged-chr7-4653990-4	chr7	4653481	4654481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4969.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	7.40627201385516	7.32515670957792	7.26985817897935	7.65159021319119	7.70195288742881	7.32726961322122	0.354384708038031	0.139723469345409	0.49946773369819
Merged-chr4-149836187-4	chr4	149835700	149836700	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-61933.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.74954141727988	2.57563113965863	2.68499624279689	2.81350560923237	2.56373079608194	2.93959326803182	0.55136833591732	0.469947783062451	0.819211345045575
Merged-chr11-78916597-4	chr11	78916087	78917087	+	906.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4200.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	2.3679625524519	2.33125072682755	2.73836045682075	2.34248083955258	2.28830152771507	2.17883153626461	-1.38413315152771	0.125231530617753	1
Merged-chr3-151294180-3	chr3	151293677	151294677	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143705.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	3.64658009506448	3.85409410028475	3.61033956390876	3.42417293370926	3.14230396323026	3.40338779795125	-1.47795366763038	0.0156846376653593	0.137002659128618
Merged-chr2-160208477-4	chr2	160207983	160208983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119011.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.39565848046211	5.26981862505603	5.20186192232359	5.46663907553965	5.38393184049633	5.54122899781892	0.318878394907435	0.346855146738513	0.735034332097752
Merged-chr10-95533087-4	chr10	95532574	95533574	+	681.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	17912.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	7.49570115337785	7.27918812894401	7.33267174541963	7.70324360583645	7.89292407928516	7.27179197023051	0.416356111822687	0.115114796582113	0.452882836595954
Merged-chr2-181187239-4	chr2	181186729	181187729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356427)	promoter-TSS (NM_001356427)	-18.0	NM_025598	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	8.01083967883249	8.44414469221222	8.28338791088824	8.09344135394962	8.46845297479074	8.19302691383637	0.00929917383503514	0.969424203232223	0.993164504846051
Merged-chr16-14360074-1	chr16	14359574	14360574	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1484.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	2.99248438913077	2.94174557634192	2.94305318232251	2.86790709769577	2.90708245422403	3.07341475124879	-0.0570766145818918	0.933183424378616	0.985356091252617
Merged-chr15-79358530-2	chr15	79358030	79359030	+	827.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304830, exon 3 of 3)	3' UTR (NM_001304830, exon 3 of 3)	10128.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	4.22140804250842	3.63853194139474	3.78648235745415	4.41961454270225	4.09970668986075	4.12019299249742	0.881483459424932	0.111328759048802	0.445743594597859
Merged-chr7-104218844-4	chr7	104218319	104219319	+	690.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	24.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	3.80612297492847	4.16988817235389	4.08617632968148	4.31344291861472	4.38087772652812	4.24923380011235	0.8057101346583	0.0980751958959151	0.41742408696201
Merged-chr17-10377285-2	chr17	10376785	10377785	+	939.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	52683.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.76930221031238	3.62764656387329	3.8158444375973	3.56926677129086	3.47824336026529	3.68503972746404	-0.564492609564714	0.307460109660217	0.703580177816035
Merged-chr17-35737548-1	chr17	35737048	35738048	+	792.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-32949.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	2.99604709662572	2.84504462124193	3.12780944883113	3.48034828077605	3.12185620657546	3.52894180138651	1.71185998794647	0.0130447561606058	0.121195630930291
Merged-chr10-4414578-2	chr10	4414043	4415043	+	846.333374	f0_c57.idr|f1_c57bl6.idr	non-coding (NR_002891, exon 6 of 12)	non-coding (NR_002891, exon 6 of 12)	14623.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	3.01539350748817	3.27551291394316	2.94776080424278	3.26522245791098	3.45111751851688	3.2115707966773	0.930774436914012	0.170594929259666	0.548085365220211
Merged-chr1-64925892-4	chr1	64925411	64926411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	30913.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.84617934844804	4.66549631412618	5.03464579164145	4.4521060949301	4.49964114951393	4.63626239817665	-0.76151196492023	0.0689616476653968	0.343605323786255
Merged-chr6-116003692-4	chr6	116003189	116004189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8684.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.52773865826084	6.31138664582787	6.54522743193017	6.64811493277911	6.8912625136128	6.46012989613218	0.365294474038827	0.19325659321939	0.580418502385815
Merged-chr15-58935649-2	chr15	58935149	58936149	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023172, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	1839.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	2.55951338094132	2.48905726597995	2.55361805143005	2.5521332350276	2.55509209424457	2.68879932777709	0.369664332856473	0.629573409710056	1
Merged-chr17-5797543-4	chr17	5797038	5798038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1119.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.42184091481844	5.85739301895967	6.34293169018163	6.61045946972783	6.56288531448065	6.22044262069388	0.41848880702926	0.1879004498142	0.57324945415763
Merged-chr6-82652978-4	chr6	82652479	82653479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025882)	promoter-TSS (NM_025882)	-114.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	7.62260793657881	8.03691596424806	7.58000000533137	7.62124421884771	7.53666818902037	7.48541269448612	-0.318924966736214	0.197929037631467	0.586043439320662
Merged-chr2-158624894-4	chr2	158624393	158625393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175419)	promoter-TSS (NM_175419)	-20.0	NM_175419	109275.0	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	6.80188734328816	6.890788818391	6.78952954756864	6.82581879518089	6.5908748791293	6.55165460284054	-0.26061159562382	0.312410786207647	0.707156602251519
Merged-chr13-92668761-4	chr13	92668254	92669254	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	MLT1A1|LTR|ERVL-MaLR	57616.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	4.40797108173566	4.85077881805143	4.6319071320073	4.4824310803934	4.24010824049454	4.57846995435916	-0.528482789061991	0.242636911628214	0.639785480506262
Merged-chr1-33904363-4	chr1	33903863	33904863	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	B4|SINE|B4	3258.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	6.60572827640731	6.24970447271684	6.78575929690669	6.27228281460617	6.49605868611279	6.87159218812948	0.00730995717303726	0.981536769301217	0.995717195177154
Merged-chr10-82860760-4	chr10	82860232	82861232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	391.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	8.52938568201257	8.77909384563637	8.25637823542776	8.43452922193269	8.59759189738543	8.43865577152733	-0.0714081129407743	0.759894355243285	0.940572672765463
Merged-chr11-20210637-2	chr11	20210137	20211137	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B2_Mm1a|SINE|B2	9225.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.17632597668285	4.55006001835084	4.39667662535794	4.21092968174012	3.91505357716748	4.50370861372969	-0.4362868276501	0.385453986148404	0.76652299793118
Merged-chr6-26304411-4	chr6	26303909	26304909	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	372983.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	2.77847533102847	2.76217042604207	2.89610568788525	2.79945817399138	2.65442082502098	2.6614652828471	-0.552769803414947	0.450380511707328	0.80833592066917
Merged-chr11-110987274-4	chr11	110986778	110987778	+	716.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-10209.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	5.96548776140948	5.74110443538293	5.71860154598333	5.83253586535009	6.37925000700108	5.80838847488363	0.408431954140171	0.2306679119149	0.626381219532661
Merged-chr4-32570786-4	chr4	32570271	32571271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	891.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.94009045804403	9.26221848596268	8.84102859447588	8.72995446433508	8.98232088295254	8.44383720570065	-0.392671962953267	0.111794093465383	0.446532398668761
Merged-chr10-77551131-4	chr10	77550625	77551625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	20777.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	6.131458372968	6.21770344836752	6.32994716048584	5.82941690252621	6.14286720991038	6.15325627910204	-0.29401205544263	0.320235267790165	0.714116509165426
Merged-chr10-57755409-3	chr10	57754905	57755905	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29518.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	3.99814582673428	3.94108984239597	3.89658227657826	3.92070494483921	3.88469683791146	3.7563818168348	-0.272783018888147	0.591816505823722	0.877776841651413
Merged-chr2-30808684-2	chr2	30808177	30809177	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356433, intron 1 of 3)	intron (NM_001356433, intron 1 of 3)	494.0	NM_001356437	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	6.27324506064644	6.02524789432922	5.64797100418981	6.14333300207253	5.9124688195063	5.62156901179945	-0.176399393596678	0.612704534137127	0.886888853880768
Merged-chr6-122596756-4	chr6	122596287	122597287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	intron (NM_001134391, intron 2 of 7)	5657.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	6.70302208072674	6.37376427817625	6.48950323438097	6.96021530105295	7.08000347221351	7.10297339596069	0.804620293603469	0.00208195737005828	0.0318815062124231
Merged-chr11-115173676-4	chr11	115173204	115174204	+	838.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	10363.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	4.66797882321615	4.31997979526527	4.06084043311078	4.40292977504355	4.29914705622	4.37591081676819	-0.0692529771681814	0.886007094856056	0.973663488368302
Merged-chr11-95042307-4	chr11	95041802	95042802	+	983.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-931.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	4.7626994472364	4.45452531350875	4.91763357987048	5.04009676740917	4.64365507863813	5.08190370422203	0.475807300653799	0.269314473777173	0.666442192834232
Merged-chr6-51533611-4	chr6	51533128	51534128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9368.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.83948407165847	7.26699808406948	6.8650875284645	7.02214250638101	6.89352985173211	6.75290759560046	-0.176355471005127	0.516809549303459	0.84431573428183
Merged-chr17-35047278-4	chr17	35046785	35047785	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-540.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	6.0119935877776	5.89580257300668	6.00683453070084	6.19235405285958	6.17300521645607	6.59285501701361	0.597251180774143	0.0475122694332416	0.276115265630568
Merged-chr15-103311364-2	chr15	103310866	103311866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-928.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	5.49559448367494	5.5665911323638	5.77003794109471	5.55320666415546	5.55602641592732	5.62682849383266	-0.056950181249568	0.860010242983719	0.967441103100897
Merged-chr7-127921724-4	chr7	127921213	127922213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 5 of 10)	intron (NM_001360699, intron 5 of 10)	8400.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	7.18359920548847	7.06773118593244	7.33157793972537	6.22703489925065	6.82766721279754	6.68011449787093	-0.901727379002723	0.0018615112066777	0.0292281140191933
Merged-chr11-61174584-4	chr11	61174053	61175053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004143, intron 1 of 12)	CpG	506.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	7.73718715024384	7.90530005952998	7.2779704934661	7.5861373580636	7.61652373146568	7.52493152421904	-0.143910390659095	0.578737982708163	0.872437129840066
Merged-chr3-22034751-4	chr3	22034257	22035257	+	802.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41895.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.32237767478951	3.23859964041542	3.46768180990121	3.70757683941353	3.53083205090273	3.97918929852762	1.46978924597131	0.0145792896205658	0.130022886468171
Merged-chr17-59474414-2	chr17	59473914	59474914	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-461092.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	1.73687351803475	1.75831364074616	1.79237024132555	1.95246572366508	1.7997866309909	2.13990276287491	1.82427026358856	0.077943937496652	1
Merged-chr5-121833879-7	chr5	121833521	121834521	+	961.292542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	2083.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	5.91006227537552	5.97965108989272	6.18091151763334	6.18526705454939	6.10913137832178	6.22077886811961	0.255345300045442	0.377128714896382	0.759616521190546
Merged-chr3-89103191-4	chr3	89102685	89103685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	5.77463780006349	5.48104226182992	5.56790928370317	5.59267253375471	5.62081297038827	5.57387224612047	-0.0347386817609893	0.914793307665282	0.980938755430376
Merged-chr13-100849294-4	chr13	100848825	100849825	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-15898.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.04288036639202	4.52950512090739	4.9403931660837	5.15323569116452	5.04951953556216	4.77589620742805	0.337384449466222	0.421057028867334	0.790122251976347
Merged-chr1-128549699-4	chr1	128549226	128550226	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	42573.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.72832582106332	2.71498401070131	2.48876275696186	2.73726656310377	2.68776211708203	3.05811285509856	0.943479079953537	0.235435937888747	0.631597709612866
Merged-chr3-100533846-2	chr3	100533355	100534355	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44663.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	2.42819393888927	2.62154968546111	2.66504990541536	2.8397070915782	2.60112107983345	3.03408814736142	1.39727102400551	0.0800273924211941	0.374148866069054
Merged-chr5-125313488-3	chr5	125313024	125314024	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	MTEb|LTR|ERVL-MaLR	27570.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.04753131939797	5.07362165018936	5.27485421453193	4.94183535469856	4.98066625234881	5.30790867984414	-0.110032659595172	0.770033518661703	0.943310056383255
Merged-chr7-118796952-4	chr7	118796458	118797458	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 18 of 30)	intron (NM_027815, intron 18 of 30)	56687.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	6.58587400480347	6.73386349893946	6.16044343778351	6.54982096096547	6.51409892935385	6.41116694623081	-0.0546700193035407	0.852064003665952	0.96531854415899
Merged-chr19-12462797-8	chr19	12462322	12463322	+	987.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	2043.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	8.86530641284993	9.19752820719972	8.86148950089175	8.83443569998861	9.16824404741466	8.71018987482525	-0.0858723859364486	0.716630261071971	0.926727756485089
Merged-chr12-85454169-3	chr12	85453664	85454664	+	822.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.29355681200722	4.48514463296878	3.87267368134783	4.09762039387919	3.9520238837314	4.29196724744266	-0.379370896269625	0.467468520855603	0.817990683108999
Merged-chr6-54736288-4	chr6	54735778	54736778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	54654.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	4.63307295513039	4.45008080307249	4.41458493214168	4.50241378270499	4.3055264270465	4.79672586839698	0.0775370735953248	0.863409680290732	0.968254670575276
Merged-chr10-39414446-2	chr10	39413946	39414946	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	44647.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.48327651230758	4.1559225484319	4.55401035830999	4.34308319652057	4.15779195471868	4.41847795511766	-0.260019659697312	0.577939308051415	0.872239383750968
Merged-chr6-122845088-4	chr6	122844592	122845592	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021899, exon 11 of 11)	3' UTR (NM_021899, exon 11 of 11)	11065.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	3.56673793490623	3.50199085812165	3.8096375364964	3.34097879036598	3.4488848409491	3.83112539615484	-0.271684799477635	0.650940647071907	0.902735752871093
Merged-chr1-171840615-4	chr1	171840116	171841116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252472, exon 2 of 3)	5' UTR (NM_001252472, exon 2 of 3)	919.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.66679027078238	7.982887805734	7.55440761928609	7.8479029650454	8.27075323792797	7.51725997776756	0.248342920627687	0.384706207320122	0.765859609510078
Merged-chr2-145998238-3	chr2	145997725	145998725	+	938.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63441.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	3.84844703675474	3.81997843220618	3.3582968645662	3.82514851261306	3.88081687798548	4.12686759687763	0.774480631404734	0.197189792092799	0.585134917458637
Merged-chr8-70675385-1	chr8	70674885	70675885	+	806.0	f1_balb.idr	intron (NM_015816, intron 1 of 4)	intron (NM_015816, intron 1 of 4)	2154.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.69365807137923	4.06384827193606	4.09172361063605	3.88900049665238	3.71646930803971	3.66161731932329	-0.623650135845863	0.253069821900512	0.650442754701237
Merged-chr5-103749733-2	chr5	103749233	103750233	+	968.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.22989824700488	3.33765743374256	3.25325024759512	3.74114627145833	3.67589766435807	3.76825109304581	1.68842281411779	0.004536750112936	0.057170059578552
Merged-chr15-76247396-4	chr15	76246875	76247875	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	568.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	6.99946905292343	6.85179880955417	7.05262981081807	7.13534002142866	6.89320667842535	6.70165391280517	-0.0597273138670807	0.819934582901945	0.957376438106023
Merged-chr12-12295136-7	chr12	12294656	12295656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	33017.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.5075402402557	7.58657362167523	7.10565324044738	7.42559597973754	7.5507052898349	7.2654538972702	-0.00201640063138503	0.993755008604002	0.998777772262979
Merged-chr14-74949086-4	chr14	74948600	74949600	+	952.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.71361777345979	4.55144654488846	4.386642637995	4.54559435989058	4.55628364630765	4.49984760353114	-0.0729568068351648	0.864558934293542	0.968297921776544
Merged-chr3-89421602-4	chr3	89421123	89422123	+	899.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113331)	promoter-TSS (NM_001113331)	2.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	3.06122254044147	3.13574362663087	3.69397077313243	3.20233838967261	2.90980603213028	3.28784039652836	-0.788510857348199	0.274318625182737	0.671721462492876
Merged-chr17-75005487-2	chr17	75004987	75005987	+	741.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019919)	promoter-TSS (NM_019919)	-42.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	1.76560177524505	1.77263766011613	1.95870159304559	1.64484358137332	1.6774155823628	1.69969990428191	-1.55987148648078	0.143180812492516	1
Merged-chr7-44549725-2	chr7	44549225	44550225	+	689.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-910.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	3.21038875803873	2.95714756252019	3.27311595897388	3.21345098871496	3.2923881917882	3.79289276598901	1.19010619348206	0.0789483082602315	0.371200250534969
Merged-chr12-100926405-4	chr12	100925888	100926888	+	876.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-18190.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	4.83148562011347	4.95457577131742	4.74883834635219	4.89922707523873	4.86368994885005	4.77535483555032	-0.00845742914162311	0.982610823861872	0.9960538640665
Merged-chr9-32540240-4	chr9	32539739	32540739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1213.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	8.06372234495953	8.00909991099354	7.74764900558462	7.73304429283509	7.84400791245896	7.89558426322887	-0.184414479223034	0.412624596121862	0.784551818322662
Merged-chr2-150922355-4	chr2	150921849	150922849	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	Lx9|LINE|L1	12755.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	7.19656729684701	7.53216744575604	7.12925101923869	7.10936865622933	7.66923550621999	7.10836082767641	0.046865102001483	0.871153554342128	0.970222087171093
Merged-chr3-116861184-2	chr3	116860678	116861678	+	813.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_009146)	promoter-TSS (NM_009146)	-502.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	6.43331552120501	6.71739087580763	6.21262720978468	7.0085663920941	7.44886791856924	6.8943091082687	1.03318719421995	0.000688380192518959	0.0135059512046964
Merged-chr15-81190880-4	chr15	81190385	81191385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	32.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	6.52372216333943	6.6223009811217	6.25701297835171	6.84547677900659	6.76958288799182	6.05990331972969	0.211791769303892	0.51995260733008	0.846082496556008
Merged-chr16-91610476-2	chr16	91609976	91610976	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	8523.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	3.86901958029827	3.55098005782512	3.58574666440921	3.83219571705828	3.81942833726945	3.96671406707596	0.613940940616394	0.26188036726651	0.659718531523246
Merged-chr1-167306636-4	chr1	167306124	167307124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2046.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	3.41452986466955	3.26863173088728	3.53910384915995	3.6331420411647	3.31188095608807	3.75926526106122	0.611374642223851	0.31549663902319	0.709834518424648
Merged-chr3-90632156-2	chr3	90631656	90632656	+	825.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19262.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	2.72466051964204	2.46912615100127	2.7299938096409	3.0538045150031	2.74353886041312	2.92832465826477	1.41500357938003	0.0690674134098427	0.343923479054829
Merged-chr1-80646808-4	chr1	80646315	80647315	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	18537.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.39851036406588	5.45629123935097	5.13912219540645	5.20010201161438	5.09784090247295	5.67108835291679	-0.0245634635043924	0.948664569871583	0.988151190239158
Merged-chr2-34769156-2	chr2	34768656	34769656	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2934.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	2.93920513093428	2.89248412123871	2.88948757895324	2.87562635745019	3.05268023031116	3.13823583695803	0.549149455848893	0.422398559730407	0.791205694431762
Merged-chr10-93263661-3	chr10	93263123	93264123	+	992.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	47536.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.99027893867894	5.05460283225735	5.29051334606975	4.27269988871553	3.96131393141774	4.25620756387744	-2.39203203589668	1.5001502519979e-07	1.02064188199707e-05
Merged-chr17-33998799-5	chr17	33998267	33999267	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	1566.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	4.53707649749463	4.12479885773263	4.54382516760575	4.88534846672182	4.68580900240651	5.1385429837328	1.17720359122304	0.00919981666097721	0.0950233217469173
Merged-chr1-85588695-1	chr1	85588195	85589195	+	989.3333130000001	f1_balb.idr	intron (NM_030194, intron 5 of 11)	intron (NM_030194, intron 5 of 11)	10115.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	3.70504473132442	3.58277381150829	3.77275983684771	3.29326226908777	3.17886574383252	4.0205102477243	-0.455861698774581	0.498852773465033	0.834149631434403
Merged-chr11-59538586-4	chr11	59538080	59539080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2989.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.71666966086909	6.42489990726918	6.58446200393734	6.47949873646048	6.62485626297305	6.39056088949312	-0.113860382643502	0.676739859492674	0.912549881054299
Merged-chr16-38476418-4	chr16	38475930	38476930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	17497.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	7.37993944301786	7.34514798511762	6.99001350195407	6.73012875364954	6.9797317569683	6.65902187170874	-0.685101818024101	0.0104932593824018	0.103883959703249
Merged-chr4-121197183-4	chr4	121196678	121197678	+	978.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	17906.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	4.00765453197286	3.59680226696551	4.0203112524068	3.58840406150435	3.54609910487321	4.08767764100434	-0.412331656751536	0.484060786491467	0.82665199605554
Merged-chr2-68978843-4	chr2	68978350	68979350	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	117409.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.01494220159011	4.05439445734888	4.21019965393951	4.1807535054516	4.17478011842042	4.23312257114585	0.298200243970263	0.52574768322283	0.849127238910141
Merged-chr13-23701376-4	chr13	23700880	23701880	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010424)	TTS (NM_010424)	-2922.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	4.95692486097768	4.88895281051244	5.04093098549491	5.30238908467539	5.16737062189951	5.17336535101544	0.541802620832439	0.133920750649854	0.48931971282102
Merged-chr6-72550856-3	chr6	72550373	72551373	+	783.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	L3|LINE|CR1	1226.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.93480322207571	4.78243619760822	5.39710510484176	4.32737140961048	4.32636254624276	4.9686148451869	-1.11472144267152	0.0200898431689445	0.161933127036863
Merged-chr14-54408473-4	chr14	54407884	54408884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	1088.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	7.17791018235684	7.34230342263126	7.35049252822745	7.0487953500028	7.34744344699906	7.12751230928194	-0.154017916082762	0.528867448065052	0.850585575598857
Merged-chr9-54736518-4	chr9	54736018	54737018	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1969.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	3.52833990935797	3.65965201238121	3.34377845772918	3.33915471415949	3.26810872446776	3.58148202709487	-0.478128623056335	0.432230567238796	0.797270167804312
Merged-chr4-21879010-3	chr4	21878511	21879511	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172687)	promoter-TSS (NM_172687)	-635.0	NM_172687	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	5.00363761322804	5.25867728320203	5.23842579538853	5.13081138102076	5.01428768635019	5.23916994830928	-0.09631080699174	0.792192670874359	0.949929758256028
Merged-chr11-95831232-2	chr11	95830732	95831732	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153104, exon 3 of 3)	exon (NM_153104, exon 3 of 3)	6732.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.78561331592903	4.80594287608062	4.9959419575994	4.94900982765354	4.90034204237576	4.91968784659653	0.14373911471624	0.706420782813687	0.92295932039107
Merged-chr5-138255697-4	chr5	138255224	138256224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081108, exon 1 of 4)	5' UTR (NM_001081108, exon 1 of 4)	242.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	6.64601447333603	6.94010017058304	6.8328284503879	6.74079146872152	7.01852022296041	6.72163896713056	0.0477522927682835	0.857979153045437	0.966785186918462
Merged-chr13-63430580-2	chr13	63430091	63431091	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347515, intron 1 of 15)	intron (NM_001347515, intron 1 of 15)	1154.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	3.78585951528949	3.9596415624503	3.91314258619797	3.98394824363529	4.18802735115239	4.12666692282423	0.646379544426973	0.194220083403985	0.581402529136523
Merged-chr11-88953751-1	chr11	88953251	88954251	+	580.0	f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	1691.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	4.19344257393575	4.41103378545365	3.98822753943729	4.16639714185645	4.20624338031687	4.05910822094145	-0.192253660890855	0.694229098420188	0.919210273513843
Merged-chr1-72106805-4	chr1	72106298	72107298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101603.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	7.15710162079432	7.23924192902574	6.56202799686294	7.17759522433937	7.39197047012907	6.84828357785641	0.204559347742483	0.505754072332528	0.838177729332582
Merged-chr12-85474029-4	chr12	85473517	85474517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010234, exon 1 of 4)	5' UTR (NM_010234, exon 1 of 4)	127.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.63721017188043	8.41843442493243	8.09329640314438	8.21365181496907	8.34752240220373	7.73392965695554	-0.3842566734758	0.156749888612564	0.527613063058663
Merged-chr9-64222296-4	chr9	64221788	64222788	+	881.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	-12913.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	3.39986415879412	3.73921870587406	3.67207122309005	3.74213380235086	3.43680650020505	3.58354193179406	-0.0720034808639404	0.901826277652157	0.977356766938531
Merged-chr19-11910685-5	chr19	11910159	11911159	+	909.4799800000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1740.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	6.04125884024222	6.19020580045428	5.86528693422165	5.60125603976181	5.50172942898064	5.24051920476083	-1.05052687256399	0.00145896696861777	0.0242217101476259
Merged-chr1-131678737-3	chr1	131678214	131679214	+	752.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9981.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	3.52913569625695	3.3613185048849	3.34266998386048	3.75621457240799	3.70792775411726	3.47581863739421	0.865021976567455	0.140220178977771	0.500490762370556
Merged-chr12-21264386-4	chr12	21263884	21264884	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 23 of 26)	intron (NM_001004364, intron 23 of 26)	21900.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	2.99334805728381	3.29404201905269	3.30083759257522	3.77312303434425	3.22300120514041	3.83972926417645	1.63770095278782	0.0161399878268294	0.139704161769981
Merged-chr13-55536619-4	chr13	55536121	55537121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134059)	promoter-TSS (NM_134059)	37.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	3.48663100303484	3.18190944114367	3.51387906796442	3.28150010394904	3.0352905401597	3.42713751460954	-0.591664889943348	0.362992187274184	0.748546565519463
Merged-chr11-94993014-2	chr11	94992518	94993518	+	719.333374	f0_balb.idr|f0_c57.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	1806.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	5.75298301607277	5.92002575529454	6.62912679225155	5.73480086389889	6.08541658715513	6.40672011901933	-0.0868307292208674	0.822336487835499	0.958041123079214
Merged-chr19-5771297-6	chr19	5770749	5771749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361921, exon 1 of 17)	exon (NM_001361921, exon 1 of 17)	170.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	7.756960997186	7.85195729841681	7.6645401108646	7.66809696324246	7.75758753091058	7.5484903086092	-0.141045192607668	0.527026134242703	0.849728541661503
Merged-chr3-21959775-2	chr3	21959275	21960275	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-116877.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.15091298831043	3.04097189260738	3.05075835408674	3.21993828424409	2.92793928453802	3.12363640892129	0.0420607839708584	0.949609670987892	0.988243921877722
Merged-chr17-23969433-4	chr17	23968928	23969928	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	5802.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	3.69876672291643	3.73799987185166	3.70922006260501	4.16448491711528	3.9131192941366	3.9374176505729	0.925570508496059	0.0751074097422155	0.360911142863841
Merged-chr7-143599353-2	chr7	143598853	143599853	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013742, intron 1 of 22)	intron (NM_013742, intron 1 of 22)	737.0	NM_001252593	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	4.31238608544701	4.42121933121004	4.86709083565722	4.50312642603967	4.54130612365631	4.75784118447061	0.138621819371279	0.760030586813895	0.940572672765463
Merged-chr9-65568876-4	chr9	65568363	65569363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	MTD|LTR|ERVL-MaLR	11224.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.63718067988939	8.42108369893052	8.11526684183375	8.34928299716792	8.71600834342464	8.32482255961828	0.0928145359472586	0.710870631002566	0.924511716032697
Merged-chr10-81395293-6	chr10	81394737	81395737	+	771.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008688)	TTS (NM_008688)	2173.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	2.65891762536751	2.58564876767451	2.449797162532	2.70069667975534	2.72907731545999	3.02118432856621	1.34809076599639	0.0919746393478768	0.404002839616646
Merged-chr12-55388289-2	chr12	55387789	55388789	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	PB1D10|SINE|Alu	4067.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	2.39741535836351	2.26023805370357	2.24516485952714	2.386017207132	2.34184775958623	2.57869344519264	0.837789711021853	0.321540416277435	1
Merged-chr11-49250544-4	chr11	49250010	49251010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110150)	promoter-TSS (NM_001110150)	-42.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	7.2889660064544	7.35693840687207	7.2941954889553	6.96952456760573	7.14577877512768	7.47652781923881	-0.159784567902856	0.530959365519653	0.851363932161699
Merged-chr5-88772018-2	chr5	88771518	88772518	+	993.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	intron (NM_007832, intron 2 of 6)	7005.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	3.81206975464858	3.95131989740987	3.979171948403	3.95295189550518	4.03535341737133	3.95031109166294	0.212350393991418	0.670529924275477	0.910029595108128
Merged-chr7-47016662-1	chr7	47016162	47017162	+	586.0	f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-8248.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	3.2874458763764	3.23212955397208	3.3981697372114	3.38987630065363	3.23850317645014	3.30263419921455	0.0271251822980591	0.964438253351091	0.991478598183903
Merged-chr15-100132428-2	chr15	100131928	100132928	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 3 of 37)	intron (NM_001159361, intron 3 of 37)	-21968.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.18168244103804	4.02004558191258	3.93967346690614	3.78012189306881	3.82638094759294	4.0089182519191	-0.567138909357446	0.264485262343735	0.662371259557422
Merged-chr5-140737954-2	chr5	140737454	140738454	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13827.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.10241366274488	4.98031736362717	4.88227307203565	4.78556640971394	4.82446138473739	4.3318652767474	-0.705452698707291	0.100411808294137	0.422602343011101
Merged-chr6-71964486-2	chr6	71963986	71964986	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 22 of 33)	intron (NM_009088, intron 22 of 33)	55433.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	3.20935236154811	2.92824883717692	2.92947602876926	3.14656142658085	3.14700229606962	3.18544465316666	0.550052523544346	0.41379201441286	0.785367083470648
Merged-chr4-136132169-2	chr4	136131669	136132669	+	586.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11653.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	2.57711949859055	2.50571749449878	2.58196065646862	2.78110562898425	2.61583956992108	3.01611618497585	1.39675893025707	0.0732266511895476	0.355590498522316
Merged-chr19-6872804-4	chr19	6872339	6873339	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14628.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	6.69820939422099	6.63860973620853	6.71510068467914	6.9482753294998	7.18704172261792	7.02049072513794	0.584376441332282	0.0188900645397498	0.155501037813959
Merged-chr5-72241718-3	chr5	72241221	72242221	+	943.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 4 of 22)	intron (NR_003966, intron 4 of 22)	38378.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.0151671806029	3.87114714355354	4.1665292194631	4.026186730826	3.76169784762851	3.90663774878856	-0.357427363085897	0.48646614394796	0.827855940662378
Merged-chr2-58160158-4	chr2	58159667	58160667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139200)	promoter-TSS (NM_139200)	-45.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	7.75399098361254	7.85344560783262	7.68357094162111	7.35710752662852	7.71304813232819	7.42492964123805	-0.365859930694466	0.123998546857756	0.471278757298044
Merged-chr1-192745666-4	chr1	192745153	192746153	+	941.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 3 of 11)	U5|snRNA|snRNA	25566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	4.601687689083	4.6202170267901	4.30772438159909	5.05067611242657	5.09412151591227	4.70342006651177	1.01232878105316	0.0181952521315289	0.15199182204199
Merged-chr3-96058775-2	chr3	96058275	96059275	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	-320.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	5.89576872875986	5.97650502159601	5.98800580525867	5.74507376528513	5.76292266705395	5.78525884445036	-0.336707086132814	0.257682702779433	0.655115106873754
Merged-chr4-117916014-3	chr4	117915519	117916519	+	941.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1020.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	4.2140357915636	4.33995988196084	4.63246958355429	4.64678918132603	4.37948035796205	4.97355293432153	0.687769698906814	0.143084449851195	0.504952536399112
Merged-chr2-117352908-4	chr2	117352404	117353404	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	7.64916444062035	7.70747097344823	7.01484190332014	7.58344581220479	7.98922066434234	7.10221624111468	0.171229505095013	0.602648815892826	0.882397657327329
Merged-chr3-60570869-4	chr3	60570332	60571332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	69653.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.86013827608846	5.96973884678278	5.42059417010969	5.76881003973278	5.86325794546027	5.48543624753319	-0.105787908087722	0.761607276209377	0.941258867861232
Merged-chr2-75790167-2	chr2	75789667	75790667	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42010.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	2.754418615586	2.89707006855023	2.98385162457146	2.74021887205944	2.66699839373363	3.11091774674372	-0.157210514865781	0.83261337787087	0.960675771616276
Merged-chr7-101896691-4	chr7	101896185	101897185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291349, intron 1 of 4)	intron (NM_001291349, intron 1 of 4)	354.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	7.39855957064887	7.32459836863871	7.69543317815003	7.63378846507854	7.82094932940723	7.49913800493641	0.275071493335972	0.263572219493619	0.661476013554917
Merged-chr7-81305706-2	chr7	81305206	81306206	+	931.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	39528.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.1075654743046	3.50098068129023	3.34101699453249	3.14368675193177	3.58680379781617	3.57334560402176	0.46259894735164	0.48312949703556	0.826011835108275
Merged-chr2-52426851-4	chr2	52426339	52427339	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1965.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.55569127724161	3.46726465093838	3.40374298991493	3.65882653278569	3.50271997008084	3.58679618088803	0.368241861100917	0.51854541991037	0.845359077192438
Merged-chr4-156216779-4	chr4	156216277	156217277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172417, exon 2 of 4)	5' UTR (NM_172417, exon 2 of 4)	850.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	6.42075089271342	6.22915021760784	5.67882252303169	6.40637728284274	6.05880411630965	5.96270568400777	0.00137759619492256	0.99683873143793	0.999228483242628
Merged-chr1-119648619-4	chr1	119648100	119649100	+	869.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145506, intron 1 of 24)	CpG	400.0	NM_001113416	226352.0	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	3.51307066264468	3.06804044330898	3.34345734262173	3.13462533675352	3.06699795343846	3.30470989029654	-0.650316231275698	0.326442691833113	0.71871363873492
Merged-chr1-4907214-4	chr1	4906747	4907747	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48919.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	3.69701655495993	4.15944367700829	4.02391117156877	3.79406182637811	3.53179086203103	3.69255255851428	-0.971676618209792	0.0819834799606888	0.378718446338826
Merged-chr6-124874976-3	chr6	124874476	124875476	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 3 of 9)	intron (NM_013488, intron 3 of 9)	-10993.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	3.9554351335365	3.67892187506374	3.89767625950491	3.76145565595858	3.66333341030994	3.65857381929194	-0.497948093729325	0.354858089289964	0.741885223458274
Merged-chr2-120381585-4	chr2	120381096	120382096	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110497, intron 7 of 19)	intron (NM_001110497, intron 7 of 19)	-22300.0	NM_172672	76051.0	Mm.38851	NM_172672	ENSMUSG00000062646	Ganc	5830445O15Rik|9330160A12|mFLJ00088	glucosidase, alpha; neutral C	protein-coding	4.95211983107303	5.07790780850391	5.30817695141692	5.06766171772603	5.2978793486484	4.97369002491761	0.0420033436576552	0.911951987262111	0.980211734893551
Merged-chr4-59626662-1	chr4	59626162	59627162	+	715.333313	f0_c57.idr	intron (NM_001015681, intron 1 of 3)	CpG	451.0	NM_153158	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	3.37472648812554	3.28883243380838	3.45385912469187	3.35609740694144	3.28753157744502	3.12060271548717	-0.43027938399872	0.488780790811655	0.829423271678195
Merged-chr9-107974677-2	chr9	107974177	107975177	+	783.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-890.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	6.61106931358653	6.74573253948641	7.03945881260556	7.20304463803219	7.3827233723567	6.84503453144847	0.563880512449363	0.045920397063737	0.270850513110863
Merged-chr10-8757195-4	chr10	8756690	8757690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128880.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.41339495969386	6.14004496173808	6.33363697084465	6.38168648166628	6.20436896491588	6.41200520892587	0.0507459983253956	0.857452482615135	0.966747388099837
Merged-chr9-87022648-3	chr9	87022153	87023153	+	865.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 1 of 14)	intron (NM_001359962, intron 1 of 14)	624.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	6.30653274557755	6.30462009852733	6.24063068931729	6.85133362245033	7.09262781431509	6.36492618836088	0.849521861774324	0.00508757913243051	0.0618844686567347
Merged-chr15-100590721-3	chr15	100590218	100591218	+	793.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 3 of 10)	RMER6B|LTR|ERVK	-4353.0	NM_010127	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.20609901993177	4.1494565546591	4.46806505100512	4.33549677934904	4.42744877974391	4.45264716658632	0.354716322775624	0.43354563470517	0.797815674529737
Merged-chr18-4257690-3	chr18	4257193	4258193	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91861.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.71571228252597	6.27171807086042	6.21592668948087	5.6047462793116	5.59698191974195	5.84492162044828	-0.725520444376175	0.0312685841446893	0.214086756316243
Merged-chr1-92973698-3	chr1	92973228	92974228	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	609.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	7.13791799674602	7.23655452856907	7.46007650335204	7.2716080515998	7.54286643420102	7.42574498323957	0.211264338723634	0.387519896268815	0.76768118438771
Merged-chr11-50225281-4	chr11	50224799	50225799	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-36.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	7.9947511675639	7.96509634085059	7.91595836046682	7.74372647572388	7.67718509302762	7.6874726522184	-0.369275820158682	0.0802278469681566	0.374769895950677
Merged-chr14-31375475-2	chr14	31374975	31375975	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 7 of 7)	intron (NM_001347585, intron 7 of 7)	38837.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	5.70251903950608	5.57174474731044	5.78818220593156	5.59328144326249	5.72902197411504	5.69729620823697	-0.0150769390448708	0.961847357664668	0.990684873115088
Merged-chr2-167759497-2	chr2	167758997	167759997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68320.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.9820237646691	7.71683803518908	7.71295709521414	7.7604012080539	7.65824512993649	7.66059231008948	-0.172059299751617	0.446990288563024	0.806181162474305
Merged-chr2-52998820-2	chr2	52998303	52999303	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140935.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.36215917225057	5.97061908577251	5.93861993428857	5.88076978653722	5.89291708932848	5.62540063600904	-0.519538422602738	0.106989511440105	0.436519724816527
Merged-chr10-26771837-1	chr10	26771337	26772337	+	552.0	f1_balb.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-675.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.74382581807879	4.53271578398153	4.55684954434583	4.45771554387828	4.58197429554068	4.35909715117387	-0.341370634634776	0.427696502945293	0.794564973923775
Merged-chr12-86166409-4	chr12	86165915	86166915	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2926.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	2.79766530743398	2.92365806958249	3.06336906927297	2.8964472045622	2.55024865484787	2.71471582739798	-1.04706869876071	0.170135121675565	0.547411283569096
Merged-chr13-70043007-1	chr13	70042507	70043507	+	597.0	f0_c57.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-14659.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	2.09314246724463	2.30683352694496	2.32932194307063	2.53577579977439	2.5097699102218	2.53502079662284	1.91011180605403	0.0354476204660578	1
Merged-chr19-29463236-2	chr19	29462736	29463736	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	52317.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	7.67307829311709	7.52225326390027	7.21108003832808	7.56048803352009	7.70280301784028	6.83165113855503	-0.0846979441086234	0.786178186096297	0.948392404730641
Merged-chr8-85060096-4	chr8	85059605	85060605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026791)	promoter-TSS (NM_026791)	-14.0	NM_026791	68628.0	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	4.90041369663799	5.06240998494238	4.98399077036291	4.3548289239213	4.45107275439117	4.80124387362884	-1.04071281852916	0.012810355834943	0.119686064261614
Merged-chr12-99523090-4	chr12	99522605	99523605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-40736.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.45077530387603	3.07687710556542	3.31610449571411	3.33989819241371	3.33052839084764	3.54877435633063	0.448437017774079	0.477307623145289	0.823237639056184
Merged-chr5-36554035-4	chr5	36553539	36554539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	B3A|SINE|B2	-23416.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.14909751272833	6.16391099048954	5.92286614649388	5.82349697500397	5.72662212122464	5.98414982292487	-0.440217207911798	0.144561072134939	0.507348668044083
Merged-chr4-134734634-7	chr4	134734144	134735144	+	906.88092	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30354.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	6.0019804992663	5.7492942918508	6.04156295169666	5.8571129817274	5.83095739345964	6.08052444910682	-0.0213497726017078	0.944840299097103	0.987875414328125
Merged-chr7-80063714-2	chr7	80063214	80064214	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	11543.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.99781726944244	5.46732912599604	6.09753569422451	5.72514151411829	5.37264344866268	5.77982438126432	-0.446802142163566	0.218992419377776	0.613128894826908
Merged-chr2-24344807-2	chr2	24344307	24345307	+	908.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-484.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	5.17136679038913	5.09126225446863	5.13835001536811	5.23192275148375	5.10537026800949	5.10032277264911	0.028997018344066	0.935003645871545	0.985758101267319
Merged-chr10-128264074-1	chr10	128263574	128264574	+	587.333313	f1_c57bl6.idr	Intergenic	Intergenic	-3923.0	NM_133997	103161.0	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	3.6535084613494	3.63627428475025	3.62340690814462	3.82598826390834	3.53396963865002	3.7461576901035	0.219379741793065	0.69063667652707	0.917915728386653
Merged-chr6-116005404-2	chr6	116004904	116005904	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10399.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.69573757307848	4.35451134437503	4.28449287375223	3.93395074940369	4.21122577355941	4.43976682109204	-0.678056386560177	0.169884876563708	0.547041114004981
Merged-chr8-126567877-2	chr8	126567377	126568377	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Eulor6E|DNA?|DNA?	25559.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.28062765873006	3.1679667635154	3.43343576112633	3.24727596937697	3.02431556187023	3.17268167261115	-0.611852444299228	0.341106577119254	0.730686899066382
Merged-chr11-75592854-4	chr11	75592367	75593367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	4788.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.88482101515327	5.5760317195629	5.93196129206552	5.89929961956693	5.81236263698548	6.18292312155107	0.290261694714382	0.369261792653724	0.7539906644021
Merged-chr8-56296103-2	chr8	56295603	56296603	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	1551.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.11050701666287	6.21262228890101	6.09756303701662	6.41995684941708	6.6912748169949	6.24624783033981	0.5522996827692	0.0573028042050944	0.308851647382919
Merged-chr14-27429485-4	chr14	27428964	27429964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028945, intron 1 of 23)	CpG	630.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	7.6139852929777	7.93313400116145	7.97389072570979	7.6537688188133	7.70166395404457	7.96485109903341	-0.102708331088514	0.670303995158022	0.910029595108128
Merged-chr13-5867364-3	chr13	5866864	5867864	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	5875.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.44009422349887	4.26778887623095	4.9532163009056	4.52325784627329	4.45702417281658	4.67280333855586	-0.0609349478006166	0.896804977439759	0.97587199430405
Merged-chr17-5807322-3	chr17	5806834	5807834	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7844.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.18348334049374	5.31335950296797	5.48524526562156	5.22372432104174	5.39881037358331	5.11031171465358	-0.129040093379209	0.718808214878078	0.927526114130251
Merged-chr2-158161065-2	chr2	158160565	158161565	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14673.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.44389157536824	5.55762100514506	5.90388458720656	5.81551972567317	5.91948712786781	5.72041200760757	0.347215008867922	0.291784341153541	0.689235268138963
Merged-chr3-97231465-4	chr3	97230968	97231968	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4104.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.21778059295962	5.49195251494349	5.4916626925076	5.94232743387121	6.03902704326026	5.92250670638622	1.04510516652349	0.00108036391145801	0.0191306491476054
Merged-chr13-51307786-3	chr13	51307288	51308288	+	957.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100830.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.10573398838538	3.32485101109134	3.29818941974206	2.73619514358763	2.66624323053657	2.77628597441359	-2.85245153574732	0.000361844006172528	0.0081220167428119
Merged-chr15-103514260-4	chr15	103513753	103514753	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-724.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	4.23764494613445	4.17198732982683	4.11498782385849	3.89878225486239	4.01422555101562	4.39934216961134	-0.187932438880271	0.706301421610427	0.922954363968952
Merged-chr9-72275400-4	chr9	72274846	72275846	+	915.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146224, intron 1 of 21)	CpG	458.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	6.08753162137308	5.94106628813209	5.75894336365976	6.38009436938653	5.65102954694092	5.79474235317748	0.0755540967525722	0.832096506769034	0.960599756045642
Merged-chr11-49080857-2	chr11	49080357	49081357	+	903.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	4270.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	4.76785908691985	4.84075812664027	4.87631695455717	5.05845164379011	4.95538093547496	5.0819065121402	0.443977403506285	0.237712652422261	0.634225619096145
Merged-chr18-61103454-2	chr18	61102954	61103954	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-2118.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.17397584960686	3.12546490569882	3.15451679714648	3.4481808453	3.44381291940075	3.94482595127206	1.8452202779277	0.00447236156218688	0.0566331244660548
Merged-chr18-4333837-3	chr18	4333326	4334326	+	726.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007746, exon 7 of 8)	exon (NM_007746, exon 7 of 8)	19127.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.14433443522733	4.26667209950731	4.67485661847417	4.15235616320195	4.21773125291917	4.7389590100025	0.0370250041927567	0.941842246538464	0.987062442062226
Merged-chr11-16978149-2	chr11	16977649	16978649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	26739.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	6.01347334103383	6.08713839729987	5.96630434907798	5.83715311620102	5.77636867770752	6.04966085239765	-0.252179567695699	0.398476875265758	0.775273667788888
Merged-chr4-132260573-4	chr4	132260096	132261096	+	828.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 1 of 10)	intron (NM_001122992, intron 1 of 10)	953.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	6.95009525283479	7.03943209370107	7.32444712895672	7.48637084153459	7.50265258719384	7.56287872136774	0.61079999406234	0.0115376545619304	0.111247255538202
Merged-chr16-91613179-4	chr16	91612665	91613665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	5834.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	6.94859856794156	6.63602865570632	6.82365761772845	7.42033161037848	7.40043896412832	7.19493450432223	0.815158339852145	0.00117387479775078	0.0204001199188068
Merged-chr16-10498350-4	chr16	10497861	10498861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	8580.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	3.96204439585454	4.05830728726369	3.88732583873783	4.57849395456765	4.47241418251751	4.17006978189147	1.23807072611318	0.0111136761307017	0.108284164342321
Merged-chr19-14586268-4	chr19	14585769	14586769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	10944.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	7.35701396307133	7.05255933818512	6.85346684051636	7.33131228381695	7.71350254317396	7.34773515462849	0.549104339375829	0.0449106820815453	0.267267060123103
Merged-chr8-70659768-4	chr8	70659183	70660183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	55.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	6.93856909277144	6.82411129750464	6.80705318946189	7.2068685205776	6.95968677331536	6.68790411066832	0.178748658719769	0.50497108159936	0.837928144581384
Merged-chr8-72723279-4	chr8	72722763	72723763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009188)	promoter-TSS (NM_009188)	-7.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	6.19679368173422	6.67329587442012	6.15544456896465	6.40918724038259	6.37228997465771	6.14917247008667	-0.0887277585430617	0.774033907725756	0.94425470583833
Merged-chr9-22367683-4	chr9	22367174	22368174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	21532.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	5.30400301579139	5.48573822105048	5.40361543083445	5.65190754111507	5.66347653083326	5.55561990050718	0.432479137831947	0.184507486046018	0.568220956020798
Merged-chr7-30551473-2	chr7	30550973	30551973	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183321, intron 1 of 11)	B1_Mm|SINE|Alu	799.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	3.76547682422844	4.09885004507042	3.93603902702677	4.27573008279193	4.01684885374401	5.05867720399767	1.54223770097638	0.00757080663544719	0.0827359703864316
Merged-chr12-116449768-4	chr12	116449259	116450259	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 26 of 28)	MTD|LTR|ERVL-MaLR	-35961.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	3.23182922899531	3.40466465526729	3.50072739097478	4.09998734658227	4.29556275501596	3.95709080275338	2.65428002243028	8.42268309584384e-06	0.000345408878777218
Merged-chr16-92410821-2	chr16	92410321	92411321	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	B1F|SINE|Alu	-10743.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.15602420513093	5.9775848156416	5.87593052394887	5.43105994488236	5.48079561492606	5.65452383302044	-0.900096835279337	0.00430780709238079	0.0550013829281603
Merged-chr13-93774002-3	chr13	93773488	93774488	+	974.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	2309.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	4.44982743824589	4.64718246460756	4.11116708016673	3.52208335964193	3.43020293536557	3.8195546215174	-2.74612378566293	2.47726074669241e-06	0.000120683789350575
Merged-chr14-66227548-2	chr14	66227048	66228048	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-13724.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.65194254841449	3.47453383697831	4.09312152453826	3.88218447463183	3.81600757265685	3.83851789904359	0.28665988089801	0.615671019278529	0.888073730124794
Merged-chr19-5718216-2	chr19	5717707	5718707	+	899.25	f0_c57.idr|f1_c57bl6.idr	exon (NM_001114597, exon 9 of 19)	exon (NM_001114597, exon 9 of 19)	8110.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	3.74054637538285	3.57046914810251	4.63198756634932	4.45574080692153	4.61382174064567	5.02182634891324	1.50749051804361	0.155816093329537	0.525841397378494
Merged-chr3-31232993-4	chr3	31232477	31233477	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 4 of 7)	intron (NM_172861, intron 4 of 7)	77342.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.30445999910154	2.85162273741217	3.16132472881858	2.96443030186564	3.07119310500508	3.11803930443811	-0.298258642191989	0.667744883470813	0.908813236401378
Merged-chr19-34633649-4	chr19	34633150	34634150	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 1 of 2)	intron (NM_053217, intron 1 of 2)	-3839.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	4.29487542904596	4.27554822972134	4.34591781419513	4.4666965307952	4.46882510602357	4.61939441720712	0.545443771952943	0.209319621727771	0.600795691090872
Merged-chr11-46063276-4	chr11	46062752	46063752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	7268.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	4.59971690604204	4.07387009965296	3.96176612935852	4.28519433616896	4.07713123623363	4.28040561893355	-0.103575141965393	0.841730568031811	0.962988975342446
Merged-chr6-148539033-4	chr6	148538517	148539517	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75292.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	4.39667925358153	4.36647974160154	4.54914647855037	4.54254358523584	4.06807795601109	4.49470521106972	-0.149745850324435	0.749350159347834	0.937284710164971
Merged-chr3-153564503-2	chr3	153564003	153565003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	160630.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	3.0638264594747	2.98350980463941	3.22465164182637	3.06122450961922	2.95327882980849	3.24083860249918	-0.0245351912726555	0.970624636957853	0.99351865396095
Merged-chr11-63048780-2	chr11	63048280	63049280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-12879.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	2.84739376442241	3.21045479952337	3.31467881882559	3.00493029649855	3.06638496808024	2.98833495785137	-0.503306241915218	0.471728653340364	0.820254709994237
Merged-chr4-116077344-3	chr4	116076850	116077850	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153521, intron 1 of 9)	intron (NM_153521, intron 1 of 9)	2081.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	5.72343242504087	5.73039834850889	5.91961034691657	5.85151626662408	5.73334797071497	5.88720046935826	0.06025762135059	0.844151097321823	0.963711687630021
Merged-chr2-167783632-3	chr2	167783132	167784132	+	785.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	92455.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.17680306307121	2.94678853792341	3.16863555830633	3.19879375736817	3.33674858189458	3.12258315810378	0.549297803342815	0.401803648449427	0.777753227258936
Merged-chr6-99095607-3	chr6	99095070	99096070	+	746.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67272.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.50704285872425	4.72967749347463	4.31722649232726	4.18456619043608	4.03154078599979	4.04125194481328	-1.21077270442727	0.0104960307176866	0.103888308916678
Merged-chr16-55810417-3	chr16	55809916	55810916	+	783.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159394)	TTS (NM_001159394)	11722.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.74027428501511	2.8675066834738	2.92586690562752	2.98338068532511	2.91521810315168	3.16983711655649	0.854854089005303	0.221219903963211	0.6157275086041
Merged-chr19-56252965-2	chr19	56252465	56253465	+	640.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-34947.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	2.985093035477	3.03316986136504	3.40561681986228	3.12701100359325	2.88673264870125	3.26684493435614	-0.219404716677462	0.752237466025443	0.938157651950668
Merged-chr13-49189231-4	chr13	49188690	49189690	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	1643.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.69900963671985	8.83596822605188	8.85330557733137	8.85703346561994	8.98131294254668	8.60959903832638	0.0457917648362037	0.830255935827897	0.960219727001139
Merged-chr8-104103665-4	chr8	104103158	104104158	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	2033.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.13978079310747	4.08993611983706	3.89106302597433	3.94936303246995	3.4771137195799	3.8048306293737	-0.92635788903247	0.0942283038247319	0.408956234963576
Merged-chr11-105590127-4	chr11	105589680	105590680	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181071, exon 1 of 26)	5' UTR (NM_181071, exon 1 of 26)	194.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	7.60851617144823	7.55429124003619	7.30059683403745	7.62087549845649	7.52830345783603	7.19861452995246	-0.0464562898975659	0.853306617323512	0.965672676480491
Merged-chr6-31180334-2	chr6	31179834	31180834	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	38140.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	2.64542365904073	2.47257061341196	2.88817877282784	2.38410530590685	2.42814789926547	2.4798901291144	-1.46537657523073	0.0784006560885392	1
Merged-chr9-57565810-4	chr9	57565308	57566308	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	4864.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	5.37843886822308	5.06786504689579	5.55736367121264	4.98018143268709	4.86695085450529	5.22499052042578	-0.65908571207523	0.0878216847481406	0.393191646194419
Merged-chr10-7210513-2	chr10	7210016	7211016	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	1721.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.6124676744773	3.32199222825117	3.29965794557649	3.33943769231428	3.17539995520013	3.6408833961001	-0.116090699764272	0.85560024018712	0.966244542232428
Merged-chr4-123921270-4	chr4	123920751	123921751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	3818.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.02419390205466	7.19412179032122	6.84528826976592	6.80239325070027	7.4443785451436	6.96287148441911	0.115943394387318	0.692249183329582	0.918622600591208
Merged-chr9-78477392-3	chr9	78476922	78477922	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4302.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	4.2801340352301	4.08637118864526	4.73976356047032	4.31904244392476	4.15246496845957	4.30292915928989	-0.340930433369695	0.490839289685405	0.830181469396006
Merged-chr2-120432181-4	chr2	120431683	120432683	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 10 of 23)	HAL1|LINE|L1	-28067.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	4.76475496112365	4.84008983335221	4.82678676371845	4.81780926592179	4.76940065025122	4.697566434816	-0.102920446080448	0.791971495862477	0.949839887482488
Merged-chr19-11813340-4	chr19	11812854	11813854	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	6049.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.75895118291847	4.92401552515357	5.27526118073415	4.72764908726489	4.59391618411363	4.57772733396476	-0.811153364604266	0.0529063681145174	0.294591519067677
Merged-chr16-20538843-2	chr16	20538343	20539343	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	3363.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	4.47670776275582	4.52675036573995	5.05034961218907	4.39858554150948	4.48126513977223	5.02142982616851	-0.10976213885148	0.819669903574492	0.957288083214325
Merged-chr6-13069000-2	chr6	13068500	13069500	+	595.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	-759.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	4.1445322540185	4.06584033036422	4.13109477777055	4.28059917340087	4.15270798219839	4.19950504896842	0.273950288521193	0.556568053181653	0.863639008804786
Merged-chr5-36596442-3	chr5	36595946	36596946	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10220.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.55725990500244	3.54041108043252	3.94664546851144	3.43365863040794	3.11039382896283	3.58927225350576	-1.10719236459598	0.0825249295822685	0.380007434459402
Merged-chr1-15805586-4	chr1	15805097	15806097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-49.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	7.35039079122914	7.77586914510639	7.32607377197744	7.2464215151211	7.38368844094091	7.19286993245995	-0.33485291896875	0.193514433483381	0.580668913858102
Merged-chr10-86779742-4	chr10	86779277	86780277	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	772.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	6.25808214845258	6.41075837962687	6.53249986319288	6.02557773351588	6.19306347309516	5.87158886761794	-0.587459923469068	0.0462980849705193	0.272206471542693
Merged-chr12-16865034-1	chr12	16864534	16865534	+	546.0	f1_balb.idr	Intergenic	Intergenic	-29944.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.57522213892792	5.49039734690297	5.67308631779176	5.16578244716584	5.26874325116815	5.80639653373135	-0.279724493497095	0.44713363932829	0.806270036091875
Merged-chr3-116651172-3	chr3	116650677	116651677	+	701.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	11500.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	4.52746071887478	4.55224743516744	4.75598594074311	4.59229556439648	4.59677292484267	4.99237023092235	0.28534452605662	0.50321407724949	0.836876400371266
Merged-chr12-8500058-4	chr12	8499554	8500554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007483)	promoter-TSS (NM_007483)	-45.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.9445447099797	8.16218890770461	7.85522939918928	8.02916344328781	7.97850962793919	7.7754715657062	-0.0888857825160359	0.696642024427293	0.919558189135685
Merged-chr17-67341690-4	chr17	67341198	67342198	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	12761.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.49007259600278	6.3900133512967	6.27711870471787	6.74901527986923	6.67240625543098	6.18482236231665	0.285614996551042	0.335067504851838	0.725339338581532
Merged-chr2-91112694-3	chr2	91112193	91113193	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	-5451.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	5.1339714161641	5.32475947780408	4.93936547835348	5.00422922646064	5.05506314699214	4.7646469169186	-0.411294048012813	0.289611410142272	0.687296395388689
Merged-chr9-70243470-1	chr9	70242970	70243970	+	540.0	f1_balb.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	36120.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	3.37922587819736	3.42517387984585	3.21238494436232	3.0689645586126	2.96481803800341	3.22655152701553	-1.13574772343039	0.0825338517134028	0.380010462824728
Merged-chr2-160657981-2	chr2	160657481	160658481	+	700.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	B3|SINE|B2	12084.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.03698768019061	3.23220139789129	3.48335230646094	2.97477992135111	2.77823296493821	3.07105624736951	-1.45026180498292	0.0417919392591773	0.255737848551115
Merged-chr10-93070841-4	chr10	93070349	93071349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	10747.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	4.7462827083859	4.68763743034734	4.95988209229844	5.03604678352291	5.02503146166534	4.87999236115924	0.43090483054476	0.265050270584112	0.662839771217229
Merged-chr7-4812358-3	chr7	4811864	4812864	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-24.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	8.35796136339331	8.67700862789136	8.41853171911631	8.39610722168942	8.76965810399745	8.55577877827661	0.127084476577854	0.579098052399475	0.872437416842052
Merged-chr5-125404157-5	chr5	125403663	125404663	+	811.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14146.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.04924867040854	5.52461307128743	5.03811426756156	5.30281066568364	5.7615010109752	4.98793521408889	0.337655726232567	0.426857164305188	0.793904265858508
Merged-chr19-3665635-2	chr19	3665135	3666135	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	20929.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	3.42652069624419	3.74299458137458	3.69936410058171	3.69997399244154	3.61343309638082	3.61156380046789	0.0445975810307883	0.936916693522057	0.986037792257163
Merged-chr3-58507426-1	chr3	58506926	58507926	+	570.0	f1_c57bl6.idr	Intergenic	Intergenic	-18395.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	3.62549756253615	3.34292604357639	3.50745830292811	3.67137147115238	3.56508246912172	3.83476650726946	0.673354903060415	0.242564435881088	0.63970402145078
Merged-chr9-118714875-1	chr9	118714375	118715375	+	967.0	f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	3183.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.94684032594142	2.80717515437223	3.01112726018869	2.8182203470811	2.75474802344867	3.02564839268466	-0.276361410297416	0.696308744363489	0.919440123947475
Merged-chr2-116913729-4	chr2	116913232	116914232	+	748.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040335)	TTS (NR_040335)	13580.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.94672194804879	5.75786015886526	5.68168025454075	5.3808111589894	5.21556921780311	5.39964091942827	-0.904918277697997	0.00598902614943719	0.0696874406156299
Merged-chr1-144317790-4	chr1	144317292	144318292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68688.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.96557241170587	8.0963505949376	7.72810320000706	7.42901532308616	7.72618770133624	7.66714576809316	-0.473382210015261	0.0476015942436021	0.276380399927416
Merged-chr5-102059916-2	chr5	102059416	102060416	+	660.43335	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	ID_B1|SINE|B4	10005.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.40222316976518	5.33232430461069	5.51385835560937	6.05189953548479	5.74814828069938	5.95915169097493	0.938686258804063	0.0036363910968442	0.0485132003184563
Merged-chr1-149971759-2	chr1	149971259	149972259	+	854.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10469.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.34483021582917	3.09031266326293	3.42214195394079	3.32497146741283	3.23496763065364	3.21367106172894	-0.118433503844102	0.851318398830166	0.965211450762173
Merged-chr19-53781024-4	chr19	53780527	53781527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	103721.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	4.20402684514997	4.3259623713809	4.01777017567407	4.50364264714675	4.69084706780162	5.08544136242933	1.43801576355225	0.00284836806804292	0.0404655984643529
Merged-chr4-139232627-4	chr4	139232122	139233122	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38511.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.47498007998028	7.33656752820339	6.86654896701979	7.26082128324238	7.28860567156389	6.63456072795129	-0.230222971664572	0.459247027847156	0.813510456924322
Merged-chr3-142588243-3	chr3	142587800	142588800	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	4.09954501732255	4.15135649677271	4.1102709399871	4.21743444174994	4.35876538407574	4.27209447508661	0.458004325198809	0.320495677304921	0.714329206729224
Merged-chr8-123318597-4	chr8	123318093	123319093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016925)	promoter-TSS (NM_016925)	-17.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	3.76562999346216	3.8413494288972	3.92800911333601	3.83546210378801	4.0374945471934	3.84730950756399	0.23195296257403	0.6524525265837	0.902986290245403
Merged-chr6-72881824-1	chr6	72881324	72882324	+	630.0	f0_balb.idr	intron (NM_019715, intron 1 of 6)	MTD|LTR|ERVL-MaLR	17468.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	4.57672497205188	4.79190748998556	4.92847212124231	4.9631953517061	4.87128777030498	4.88576286500675	0.318584691793993	0.420830684731127	0.789927346042947
Merged-chr2-144266084-4	chr2	144265568	144266568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030762)	TTS (NR_030762)	134.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	6.81162123818785	6.6952309273799	6.80702609873435	6.75914164366903	7.15697191549265	6.49302901941995	0.120322096033745	0.679576294192508	0.913926664382454
Merged-chr2-135529781-2	chr2	135529281	135530281	+	555.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53439.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	2.44100807780815	2.53372598269162	2.79717200676027	2.29605733554226	2.53415221042778	2.44430159095629	-0.973201666617809	0.251196249504446	1
Merged-chr11-114702813-4	chr11	114702311	114703311	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-24601.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	4.41968193558577	4.27580311331573	4.50445639885448	4.94151797302114	4.80684579620063	4.5717540953291	0.969619975084605	0.0235273617170896	0.179832344691729
Merged-chr15-84184958-2	chr15	84184458	84185458	+	819.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-7275.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	5.09831431439313	4.96078596075003	5.56535321098684	5.52523443378137	5.40709965702431	5.75067998612056	0.668871819299076	0.0778524472556944	0.368420999331844
Merged-chr7-27604882-4	chr7	27604384	27605384	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-913.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.58961852958829	4.52887243503179	5.13954997233264	6.22702870092511	6.50986031883882	6.41205050090354	3.19829043549192	1.18555666861128e-17	5.48043329343374e-15
Merged-chr16-36718670-4	chr16	36718222	36719222	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	24744.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	5.43763242720442	5.20437892765704	5.56603943587371	5.49715975672171	5.29918041596079	5.62786690128977	0.134104546763877	0.702256409377435	0.921841079228287
Merged-chr1-183398075-1	chr1	183397575	183398575	+	628.0	f0_balb.idr	intron (NM_001277957, intron 4 of 10)	intron (NM_001277957, intron 4 of 10)	9090.0	NM_001277958	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	3.6907066625478	3.22794405959198	3.19436134359702	3.47370055035066	3.4873048207257	3.44816025471002	0.263862673322932	0.680343113612832	0.914217125833247
Merged-chr2-160068080-4	chr2	160067574	160068574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51421.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.51561842270178	6.82618556967399	6.32446631478669	5.38025786111126	5.46982285236876	5.66031328701937	-1.87545017278718	3.39112665379841e-09	3.42437944914149e-07
Merged-chr19-5964936-2	chr19	5964436	5965436	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-730.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.24769069968387	6.30310912984895	6.29784017891651	6.30064292707863	6.60317198493795	6.16957844491877	0.168908313801299	0.558909949314729	0.86489961641779
Merged-chr5-90771979-1	chr5	90771479	90772479	+	955.0	f1_balb.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-456.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	6.9287222607239	6.89462829210506	6.74035063806504	6.57016645315584	7.02360957665425	6.70236036934842	-0.110521620014626	0.68596115342316	0.916538830253462
Merged-chr5-113008241-2	chr5	113007741	113008741	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	7297.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	3.59049156392317	3.34491375814269	3.67440645408372	3.39189754102539	3.32619703744331	3.48626767373497	-0.524260157722994	0.378122297137105	0.760495811314425
Merged-chr18-38440588-2	chr18	38440088	38441088	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21681.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.8494501694372	4.66329702276358	4.6630609618498	5.17180343798521	4.99325566553738	5.13728835787543	0.805693942202126	0.037019863331347	0.237260170074307
Merged-chr11-117821400-2	chr11	117820900	117821900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 3 of 5)	PB1D10|SINE|Alu	-4519.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	2.61642696014612	2.51351323370041	2.40924576194587	2.65609703487368	2.70915405505778	2.91584646476116	1.38750655818922	0.0862818983514084	1
Merged-chr15-75678767-4	chr15	75678281	75679281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	19.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	7.75509611782665	8.26303537332438	7.7170909874295	7.80122300555453	7.92732360002946	7.43023801254108	-0.284918135891014	0.302295779663876	0.698958713820873
Merged-chr13-52042677-3	chr13	52042180	52043180	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54061.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.73899020478454	6.62476689002152	6.85257455157095	6.54835637418843	6.70313154287178	6.85422213170747	-0.0522699118494146	0.8421655388824	0.963002495523594
Merged-chr1-82799481-2	chr1	82798981	82799981	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31025.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	5.52675654610217	5.33960643344852	5.12571403281096	5.28580276044011	5.30942436062379	5.61628663281713	0.102273534147888	0.776872924815143	0.944920952024827
Merged-chr4-35240077-4	chr4	35239564	35240564	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14184.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	3.02632361615632	2.8897619321777	3.00723518668794	3.12083615698709	2.88697760602344	2.83120422153164	-0.0971209183516659	0.889068967227555	0.974207858658472
Merged-chr4-139230951-4	chr4	139230463	139231463	+	873.49585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	36852.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.88149539093154	6.7234034458939	6.37246588915476	6.94153202401787	6.62900475663659	6.58496723086565	0.0682385407907857	0.813946836732068	0.955984497572397
Merged-chr6-134172097-1	chr6	134171597	134172597	+	773.75	f0_balb.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	136397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.38796262505536	6.19398742029556	6.37749947357936	6.19756318843298	6.32349151415321	6.2423420411749	-0.100980037401523	0.715528976809321	0.926402055104375
Merged-chr16-95821162-4	chr16	95820665	95821665	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77548.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	2.59681629986577	2.42234998986137	2.52679293499092	2.72405841556005	2.61756643816067	2.78941235837719	1.09783276900738	0.158500371092655	1
Merged-chr19-56723967-4	chr19	56723477	56724477	+	930.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	1605.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.28430541862642	7.45190252009091	7.44377266569028	7.55204765790775	7.50993192156857	7.42766463837197	0.155507408374241	0.492813780904293	0.831208279358962
Merged-chr17-36161722-2	chr17	36161222	36162222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	6815.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	3.26913354469758	2.9406924125058	3.34806807099581	3.3039074151988	3.47352416398601	3.12853939728292	0.488890908139816	0.469056681474654	0.818883765302854
Merged-chr16-44986287-4	chr16	44985802	44986802	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	42624.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	3.12145160178849	2.74872619870078	3.09804235316964	2.69092531937526	2.57249255293496	2.94175196342553	-1.32892260128469	0.0875053976017745	0.392218763394121
Merged-chr18-75839503-5	chr18	75839070	75840070	+	957.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	19392.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.2328598199761	3.15298341351092	3.38441847879979	3.8109945852419	4.01434701542494	3.45927511167528	2.01703358996538	0.00131107068567318	0.0222681301517645
Merged-chr2-4516271-2	chr2	4515771	4516771	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 7 of 23)	B4A|SINE|B4	-43483.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.21189933786812	3.3885919555176	3.15148322147646	3.40845526585987	3.26739314430588	3.28454696937213	0.245836282515203	0.693638316868788	0.918960880648635
Merged-chr4-32561902-4	chr4	32561399	32562399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 4 of 5)	non-coding (NR_026843, exon 4 of 5)	9763.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.8099210130966	7.27150051455125	7.02127067427417	6.5856243177211	6.67988774330742	6.75217974387619	-0.586682155048367	0.0294422354138707	0.206353565053685
Merged-chr2-14159950-2	chr2	14159450	14160450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14574.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	2.06003007291429	2.1443701405053	2.08528944677394	2.28038575680586	2.13644882260434	2.42403342945574	1.31754773843586	0.145871076000443	1
Merged-chr12-101083672-4	chr12	101083216	101084216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-14.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	8.3634507804587	8.85172858881073	8.48361338363796	8.38491205414184	8.45707456080809	8.39853311491503	-0.240013419624235	0.298993797287161	0.695809701710812
Merged-chr19-4098194-2	chr19	4097694	4098694	+	821.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026373, intron 3 of 3)	intron (NM_026373, intron 3 of 3)	843.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	6.94458471581802	6.70645519438228	6.86651718766506	6.98594974480304	7.04789865237446	6.88109239478577	0.210551978443849	0.399759972866775	0.776144569668866
Merged-chr12-54927651-3	chr12	54927160	54928160	+	640.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013815, exon 12 of 27)	exon (NM_013815, exon 12 of 27)	58676.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	3.52423734274071	3.8104767099402	3.91628874934102	3.62172941179998	3.77544635346319	3.74042826334935	-0.131584788760316	0.812338784354394	0.955553570095744
Merged-chr10-7212251-4	chr10	7211759	7212759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-22.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	8.76364347114824	9.22095210537873	8.57543967520644	8.39793574791611	8.88848565943253	8.34877854577158	-0.429629211052636	0.119755042520834	0.462500699840962
Merged-chr8-84424514-1	chr8	84424014	84425014	+	837.0	f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	9150.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	3.02712222768917	2.99213074424327	3.28452937893162	2.494819497877	2.43533858902273	2.79202327650291	-3.3537263114617	0.000421586583669683	0.00917347710616816
Merged-chr1-171183685-3	chr1	171183209	171184209	+	907.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	12559.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	4.12633991054037	4.02524562911159	3.74264573024809	4.42478470950339	4.18733429568261	3.87463399574158	0.58239572801449	0.278746938922315	0.676134243382005
Merged-chr4-98056749-3	chr4	98056236	98057236	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 7 of 10)	URR1A|DNA|hAT-Charlie	279110.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	2.3105377383347	2.27582454357855	2.44971388051728	2.18404684771639	2.34301194134932	2.26832151933716	-0.503903153837813	0.556077583751647	1
Merged-chr9-113928793-4	chr9	113928293	113929293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2141.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	6.86337044502545	6.86855445000349	6.7265798721578	6.61941555375318	6.70802431065746	6.62129818586375	-0.270614298462282	0.281792674770207	0.679908771156903
Merged-chr7-73619713-2	chr7	73619213	73620213	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-61318.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	6.69158243276944	7.07857855030132	6.56061912491016	6.69046769435609	7.05173267814715	6.32314677187397	-0.103907874481528	0.747361915348445	0.936600911319824
Merged-chr11-62539040-7	chr11	62538494	62539494	+	938.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028448, exon 1 of 5)	exon (NM_028448, exon 1 of 5)	267.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	6.67205697878824	6.45196766253403	6.42989818496051	6.65797456347459	6.11563523104856	6.13957462620721	-0.314264253356832	0.307790872973736	0.703860357236263
Merged-chr12-105781529-4	chr12	105781019	105782019	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 17 of 17)	intron (NM_030187, intron 17 of 17)	-3178.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.61011044331635	4.63293215205849	4.09438006074402	4.81185672884444	4.55841496447452	4.72216644330276	0.522053710280084	0.265116403176986	0.662860627571611
Merged-chr1-106233627-2	chr1	106233127	106234127	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	61758.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.87174427998694	4.50384821344342	4.68010935668988	4.37007204805092	4.40850197869219	4.45902797726574	-0.698316858263095	0.106940566390878	0.436454439973323
Merged-chr19-8989921-1	chr19	8989421	8990421	+	626.0	f0_balb.idr	intron (NM_001039959, intron 1 of 5)	CpG	637.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	3.08203229260581	3.02760754983564	3.03687548994194	3.03191109881378	2.93970969870053	2.86233470047458	-0.470864857817045	0.486761220299256	0.827985697457807
Merged-chr6-39724915-4	chr6	39724452	39725452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139294, intron 1 of 21)	CpG	511.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	8.05975267688716	7.83101825826178	7.42266906622073	7.99755267679138	7.64435526399973	7.80089600878913	0.0217444481445398	0.934950866734846	0.985737531446296
Merged-chr6-129682924-2	chr6	129682426	129683426	+	598.5	f0_c57.idr|f1_balb.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3953.0	NM_010652	16641.0	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	4.42511376480262	4.43576248217524	4.37337871197189	4.28752327495937	4.69289925089782	4.93527652457719	0.603035882225354	0.188020703980575	0.573416108077913
Merged-chr7-19148592-2	chr7	19148063	19149063	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026111, intron 1 of 6)	intron (NM_026111, intron 1 of 6)	633.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	5.00839167620305	5.08048747828621	5.44722565643513	5.27580058232617	5.46921513928168	5.30404656136921	0.359744171318068	0.325809964801684	0.718259738003882
Merged-chr12-102368257-4	chr12	102367746	102368746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71567.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.76495627728772	8.00789507896092	8.05896442105954	7.87845302959866	7.92724995505393	7.52464784863042	-0.215935307254185	0.372153054170713	0.756099728816208
Merged-chr3-152122311-3	chr3	152121809	152122809	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	43591.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	3.14615348088687	3.22615043678585	3.2828394845336	2.71763253991757	2.5781942276334	2.82896307152001	-2.91277487156847	0.00039166926815584	0.00864456670151489
Merged-chr16-87659916-1	chr16	87659416	87660416	+	705.0	f1_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-39038.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.70042651633056	3.58463304406163	3.64525199033042	3.66175549451982	3.5704676141778	3.60880954242052	-0.108667743474476	0.842755137109098	0.963161613177542
Merged-chr7-24398945-2	chr7	24398445	24399445	+	806.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	-683.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.93240302492054	5.15609753523735	5.04694051575403	5.00504585225624	5.12124673909689	4.96879947362165	-0.0218797770133446	0.952998289272682	0.989359300570295
Merged-chr6-142715099-4	chr6	142714607	142715607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12833.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	4.63195960485231	4.60123692761084	5.19358675166878	4.83400095117553	4.97886816834216	5.19677961969442	0.401081103929507	0.350130253222994	0.738177163457543
Merged-chr3-146152454-3	chr3	146151978	146152978	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	2304.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	5.11355247878209	5.02835349267861	4.96671085581566	3.74157775643788	3.52048470257	4.28615322047084	-3.39257006755873	5.67466766856578e-09	5.45801030962127e-07
Merged-chr16-36747366-2	chr16	36746866	36747866	+	747.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37596.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	6.81723738821915	6.84324005976584	6.64911931925983	6.29972970013707	6.33928498731195	6.75472551841768	-0.489832370521913	0.0811764392426292	0.37696892267556
Merged-chr7-45742055-3	chr7	45741514	45742514	+	718.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	polypyrimidine|Low_complexity|Low_complexity	464.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	3.79082655670595	3.96164314715694	4.35481437412686	5.56429449663429	5.89352886617245	5.57486666830858	4.17471537677455	8.61461058003898e-17	3.36527942321072e-14
Merged-chr10-99393775-1	chr10	99393275	99394275	+	591.0	f0_balb.idr	Intergenic	Intergenic	130544.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.86374196302326	3.67285902173798	3.71833875090378	3.97878752508286	3.66018685673307	3.89150699424701	0.287836532977525	0.592870200306145	0.878314455943299
Merged-chr1-156860021-2	chr1	156859517	156860517	+	904.875	f0_balb.idr|f1_balb.idr	intron (NM_028333, intron 4 of 4)	intron (NM_028333, intron 4 of 4)	20994.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	5.9847826332018	5.95841339542613	5.59849180035733	5.56170979947813	5.8086976172266	5.7447673000501	-0.284588719823463	0.380590668443722	0.76262946032186
Merged-chr19-12796267-4	chr19	12795762	12796762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	69.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	8.94890646130682	9.13869658703601	8.80182949062586	8.85566857405764	9.15298745729393	8.74592353027917	-0.0531637763272366	0.815246812851355	0.956370078970016
Merged-chr17-26481150-3	chr17	26480630	26481630	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27342.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.14151910441063	2.85018342460116	3.33428020895956	2.97530169877418	3.01485361560083	2.89035207328204	-0.697601172921353	0.326496108483196	0.71871363873492
Merged-chr10-22730580-2	chr10	22730080	22731080	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	intron (NM_011603, intron 1 of 6)	867.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	5.58813783836691	6.03935114241518	6.36420127933127	6.02579639024078	5.62541922448577	6.18524103042505	-0.121187022830981	0.742083809362753	0.935108337322314
Merged-chr3-89865105-4	chr3	89864624	89865624	+	909.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33754.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	4.6616040212401	4.82121443760549	4.94484554588961	4.66400852457097	4.53676106476687	4.55424858294672	-0.523437952252454	0.201492648802634	0.591011009643598
Merged-chr11-95859700-2	chr11	95859176	95860176	+	963.75	f0_balb.idr|f0_c57.idr	intron (NR_045187, intron 1 of 1)	CpG	859.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	7.63753153775081	7.84084807659119	7.5433296243776	7.57936705007565	7.94032183758972	7.19997732473608	-0.0896195930744507	0.748508839863756	0.937057639195805
Merged-chr15-58616899-4	chr15	58616400	58617400	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201432.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	7.19384360835905	7.0884622579083	6.86470367030752	6.99184991161948	7.26699201710264	6.69681056598785	-0.0645791839624671	0.817276240937273	0.956754861188725
Merged-chr13-42528353-4	chr13	42527846	42528846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152453.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	7.31146759092654	7.13411522277786	6.73879333030097	7.53532064744552	7.83669346847094	7.14551703008082	0.670848413138095	0.0253478822116823	0.188619798163983
Merged-chr5-139483121-2	chr5	139482621	139483621	+	860.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	1370.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	4.31864274780223	4.54757105834732	4.15952679825544	4.2002112878155	4.38687541157917	4.02382978737662	-0.363112590313132	0.456978591281197	0.811993709825292
Merged-chr4-132564961-2	chr4	132564461	132565461	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	B1F|SINE|Alu	894.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	5.21091647115923	4.89382793949118	4.65274400946066	4.44528990447002	4.14198075138627	4.41224856617146	-1.4930560104039	0.000931547861234685	0.0170319126428512
Merged-chr7-101538285-4	chr7	101537776	101538776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17526.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.57471201499602	7.52224219760209	7.36107448607211	7.22940417862018	7.57255769541924	7.24449785219413	-0.184700022785568	0.452964538563469	0.809516384045816
Merged-chr5-97002482-3	chr5	97001995	97002995	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4806.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.4107880314616	4.39316396662425	4.14718912511867	4.32760769729196	4.28350227397304	4.40118191218548	0.00777475619405308	0.986320474593644	0.997033990984076
Merged-chr12-79444878-2	chr12	79444378	79445378	+	697.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	147527.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	2.64723542214525	2.5771734098443	2.80553632489329	2.76665759528284	2.81889874642576	2.69322655849027	0.475603470588915	0.521547091040678	1
Merged-chr5-115624238-4	chr5	115623741	115624741	+	964.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7575.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	3.83103596127669	3.71082131469544	4.03376436165871	3.79222780213255	3.41282120178201	3.49344494848793	-0.955134767207195	0.0984807039415612	0.418427687285513
Merged-chr4-53111930-4	chr4	53111420	53112420	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47975.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.34049207550873	4.79154696556417	5.25260877469593	5.52798816907645	5.46313029765298	5.34819211051885	0.606796287534375	0.10901142000146	0.44106937375527
Merged-chr9-102988717-4	chr9	102988177	102989177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19812.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	4.68271248573401	5.08170824247091	5.04779249610856	5.31384794239311	5.1436903130179	4.96918807455089	0.438518456857578	0.26428341094956	0.662221571944713
Merged-chr4-86672467-4	chr4	86671976	86672976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2417.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.55846451240311	7.57200308117483	6.97103441815197	6.94657836666564	6.88793930048917	6.73232397797604	-0.818641439581946	0.00331254320087911	0.0453115394803138
Merged-chr9-20644824-4	chr9	20644327	20645327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	24.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	8.49451693720169	8.71454535972408	8.4164464221483	8.45997968716216	8.73402944983248	8.54360171849954	0.0493090971207083	0.821733881469388	0.958023303204974
Merged-chr3-103801962-4	chr3	103801448	103802448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133865, exon 4 of 4)	3' UTR (NM_133865, exon 4 of 4)	-1181.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	7.40778964794371	7.31002446062521	7.38031137979874	7.39483549846495	7.634932331165	7.33805827659705	0.153690939599296	0.513807751959853	0.842787325048798
Merged-chr12-104290045-4	chr12	104289549	104290549	+	819.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV2-int|LTR|ERVK	-24521.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	2.9849027523986	3.01085660914069	3.15054492902249	3.39174073717977	3.27869752451754	3.44540154661742	1.39345739043174	0.0301518614225604	0.209614511258118
Merged-chr2-129599158-6	chr2	129598549	129599549	+	735.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	3587.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.89422563719556	5.66866627329583	5.93094633090388	5.74956283260163	5.70927570363351	6.03503932130368	-0.00359187950489914	0.990980333033056	0.998113069044251
Merged-chr9-36769356-3	chr9	36768895	36769895	+	811.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1817.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	5.82557572825282	6.16868170685736	5.89015081574173	5.95569513402547	6.09908266645184	5.71615247506745	-0.0544141252587928	0.864808584616145	0.968414296405945
Merged-chr11-20741838-7	chr11	20741293	20742293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-237.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	8.56679255290744	8.5015004520131	8.3490729988245	8.60136557137916	8.87664797747771	8.64991490874969	0.331339304181803	0.120023293393124	0.46323568795654
Merged-chr2-22781628-4	chr2	22781126	22782126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	L1_Mus4|LINE|L1	7299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.67353860889529	5.58835869850235	5.8444069979318	5.72798696151644	5.64725196169174	5.99561228658259	0.162411368400845	0.614421011903729	0.887435546271868
Merged-chr9-15357108-2	chr9	15356608	15357608	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176976, intron 1 of 26)	intron (NM_176976, intron 1 of 26)	680.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	6.02843555508751	6.56801254869482	6.33526218250603	6.22299581029821	6.4560678880498	6.29710723610538	0.00174765160967509	0.995429021594465	0.998961028701257
Merged-chr8-4521655-4	chr8	4521166	4522166	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 9 of 10)	intron (NM_026058, intron 9 of 10)	28261.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	4.07137736769161	4.42180881504278	4.56981989245252	4.08476876244124	4.38865657198893	4.70770624508973	0.119601274899488	0.811492118558038	0.955303137357202
Merged-chr11-43569869-4	chr11	43569363	43570363	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	31699.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	3.37307522675267	3.18483306524528	3.20733766667407	3.11038442858326	3.14229345832467	3.22137987631993	-0.435449915217761	0.49142289490235	0.830520225936327
Merged-chr9-41085374-3	chr9	41084882	41085882	+	897.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5876.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.76399080499536	2.69089321252673	2.71338315445878	3.20505975173758	2.92885347092102	3.21380285034782	1.98095558191408	0.00758586961466968	0.0828570542002408
Merged-chr2-59211912-4	chr2	59211433	59212433	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	L3|LINE|CR1	51083.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.52917996985488	4.36825682509292	4.18809115550534	4.28951006015599	4.35357888036582	4.15893259734399	-0.265482977413093	0.566547372843549	0.867460507131716
Merged-chr5-99406074-3	chr5	99405583	99406583	+	698.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-153156.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.01619823248392	2.90920170535096	2.99668377180435	2.95153650566633	2.92666285773523	2.88706065597268	-0.242264679948158	0.721495634874177	0.928503945058713
Merged-chr2-34802333-4	chr2	34801875	34802875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2463.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	8.59609554764305	8.86049858993572	8.0255334868271	8.25291889931614	8.60147811239828	7.92656193158412	-0.346535141150521	0.250123180153607	0.647307401971844
Merged-chr15-3273049-2	chr15	3272549	3273549	+	792.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	2072.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	4.48352072017204	5.07715232331811	4.41790429123922	4.79746649339424	4.59495350252014	4.6215854528304	-0.0798170533668472	0.863446978983782	0.968254670575276
Merged-chr9-119093168-2	chr9	119092668	119093668	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	334.0	NR_121571	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	2.54560809170477	2.50427530315113	2.36887745734671	2.59380881695802	2.40006649259645	2.63939387895619	0.393508379123092	0.627020474703101	1
Merged-chr11-79210110-4	chr11	79209651	79210651	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32873.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.18136217840826	5.14667470644582	4.89819485069843	5.66922202187591	5.80048185429696	5.19820309359388	0.987258575699134	0.00934535792578352	0.095999837089776
Merged-chr5-115327678-4	chr5	115327126	115328126	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036616, intron 1 of 4)	CpG	449.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	7.31689800169114	6.99940354677385	7.42637085044345	7.16298303816575	6.87690132391902	7.52189375727741	-0.0743616202505999	0.796502164702596	0.951430675491237
Merged-chr2-142903055-4	chr2	142902552	142903552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131921)	promoter-TSS (NR_131921)	87.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	5.04846534061541	5.0283435685893	5.22339092009399	5.18599756696377	4.8448665189609	4.7495639666413	-0.325979281279241	0.40458250780751	0.779747209915063
Merged-chr13-17977398-2	chr13	17976898	17977898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	15953.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	7.0362714065863	7.46035374171374	7.16507709189394	7.58617534978042	7.83346420020944	7.27232752156953	0.523690439260584	0.0562561480739464	0.305705431618138
Merged-chr7-44930378-1	chr7	44929878	44930878	+	682.0	f1_balb.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-888.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	5.75456696211798	5.86081327709618	6.10036007904102	6.18069447527349	6.17587990245662	6.2618102365624	0.519848754872608	0.0781831179825565	0.369227800775351
Merged-chr12-111428312-2	chr12	111427812	111428812	+	893.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 10 of 13)	intron (NM_001289487, intron 10 of 13)	10867.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	4.08656610739146	3.74098493628599	4.02150043939305	4.73767423804049	4.39208817307468	4.37883842220747	1.53681106007189	0.00201870857351348	0.0311811217718414
Merged-chr6-120456029-2	chr6	120455529	120456529	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	2.85450212474072	2.77914415548156	2.79869606155599	3.03705335988481	2.72863522550691	2.93338537987746	0.456128463990794	0.524785170953875	0.848833934932934
Merged-chr1-36570538-2	chr1	36570038	36571038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-12157.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	6.50184180814936	6.36817617789133	6.96450390784353	6.75240635728382	7.08137898758797	6.94324972783791	0.483634984484756	0.0999060658237363	0.421550908978775
Merged-chr16-33414410-4	chr16	33413886	33414886	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	B3A|SINE|B2	13941.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	4.29137167300738	4.2663535467307	3.96449731397491	4.47511472213295	4.73899725041954	4.03818748267345	0.70675360352905	0.172993673153486	0.551723171933893
Merged-chr9-61954923-4	chr9	61954419	61955419	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028748, exon 8 of 8)	3' UTR (NM_028748, exon 8 of 8)	-8120.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.94271262681799	5.38988748374932	5.37019287885159	5.43630400088234	5.31917806885008	5.21297251806006	0.163764099771561	0.658521156089627	0.905014667687917
Merged-chr9-20896517-1	chr9	20896017	20897017	+	557.0	f1_balb.idr	intron (NM_016876, intron 5 of 10)	intron (NM_016876, intron 5 of 10)	2073.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	3.18948192014716	2.94367764386915	3.27337571633696	3.32440161165212	3.01430560336312	3.55303289666708	0.696618044131893	0.308214524175733	0.704267860156924
Merged-chr18-23805871-4	chr18	23805390	23806390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1920.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	8.17766448943992	8.07787356537781	7.6717381872704	7.81326810577435	8.2689092940869	7.72822668780504	-0.0453951809836981	0.867263903784547	0.96931826298411
Merged-chr19-9914577-4	chr19	9914091	9915091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15058.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	8.62390809535316	8.48020793646785	7.81691436692099	8.33123431801799	8.30745180899702	8.02300204992745	-0.181542295591832	0.514951417752175	0.843323036651554
Merged-chr8-46932886-2	chr8	46932386	46933386	+	550.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-54001.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.88917637585925	6.85897543921464	7.06674176278799	6.91546385804423	6.99648707380521	6.93949155772315	0.0271419006347021	0.911652668451015	0.980154516820379
Merged-chr1-173765999-2	chr1	173765497	173766497	+	814.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008329, intron 1 of 8)	B1_Mur2|SINE|Alu	922.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	6.32226923757349	6.99750614157552	5.45881609884818	7.16698590778304	7.62083064929025	6.83124503270341	1.29505141405123	0.154721690836141	0.523954354771628
Merged-chr2-132007590-3	chr2	132007059	132008059	+	903.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	22429.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	6.57968597842809	6.64493596056604	6.93014082974044	6.05020514951157	6.20113689961781	6.66636353952124	-0.642284437305979	0.0374368529818112	0.239067203600196
Merged-chr12-84748276-4	chr12	84747771	84748771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	24841.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	6.70098615552341	6.87347496336655	6.33188789640928	6.44693159088101	6.35658711717096	6.54340168777201	-0.354218177525106	0.21810590054543	0.612285957239681
Merged-chr10-12871266-3	chr10	12870796	12871796	+	821.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-9561.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.05844846785266	2.98123516907464	3.14977725015486	3.62242421314441	3.71259883177688	3.72466324498341	2.66877320916291	5.63032969954718e-05	0.00174159283881012
Merged-chr13-59842366-4	chr13	59841870	59842870	+	912.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19223.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.80402284874184	3.64045269954466	3.54245397789799	3.75515695030284	3.79647457749254	3.72465587967729	0.294643793777852	0.588345991143574	0.876357689146012
Merged-chr13-20125196-4	chr13	20124677	20125677	+	797.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	34670.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.45589879488017	5.24209863678186	4.85843595043229	5.47347138748381	5.44996804772202	5.4246538830465	0.444520584309973	0.23561916623332	0.631841167422156
Merged-chr14-31414898-4	chr14	31414403	31415403	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2774.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.53212924549816	6.61227195988714	6.66448240867751	6.59645446158043	6.6335225323325	6.65892616041474	0.0446851542739529	0.860820958736184	0.9676427717189
Merged-chr4-140982407-2	chr4	140981907	140982907	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4466.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	6.01624918160259	5.27516221269919	5.85318733593903	5.81685620775208	5.75625705697916	5.86662912547023	0.107159891700667	0.766658492746846	0.942536715432526
Merged-chr13-43784040-2	chr13	43783540	43784540	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	3.84657534662513	3.55978285034853	3.45785422495158	3.39282454319746	3.47892562617519	3.41406595581765	-0.747833702614041	0.207994556092427	0.598851592503068
Merged-chr11-59229959-4	chr11	59229455	59230455	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1688.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	5.60424629292342	5.44878270318909	6.08920836479327	5.70433218090824	6.01782953714066	6.22666974118006	0.471156666869193	0.188864263258949	0.574389027923446
Merged-chr19-23139845-2	chr19	23139345	23140345	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.72022988776371	5.18569786418087	5.16468073877937	5.04571140722572	5.14871025780556	5.16385004407709	0.173058702328762	0.656597791211121	0.904693205515276
Merged-chr10-19033859-4	chr10	19033374	19034374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-18464.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.73009976603458	4.73334065163862	4.6525796226433	4.82440245695923	4.95409590076559	4.63563431890089	0.260094834635322	0.518230117330547	0.84514310695073
Merged-chr6-128766979-4	chr6	128766489	128767489	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	21652.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	2.84563733201948	2.79854093516133	2.98784097723756	2.70205118790562	2.86308007901284	2.63283202073319	-0.68915891297246	0.357170566412764	0.743779426322518
Merged-chr10-59950890-3	chr10	59950358	59951358	+	795.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029083, exon 3 of 3)	exon (NM_029083, exon 3 of 3)	912.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.32900756678447	4.3464004751965	4.94443266900239	4.15844469440587	4.20099757567327	4.63905919602712	-0.552334017764872	0.27271745778534	0.669951714189667
Merged-chr9-96531554-2	chr9	96531054	96532054	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52879.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	5.79413437811724	5.56872394970589	5.53845225422605	5.67734577733565	5.85108743495795	5.16786555493513	-0.0530875730586641	0.88508741483275	0.973538624783452
Merged-chr12-76254522-2	chr12	76254022	76255022	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	-710.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	4.99642856736392	4.70666526526236	4.20331939031406	4.78758079728494	4.72204310676053	4.47785868822519	-0.0316912843179866	0.947716744346338	0.988008807662239
Merged-chr1-87653922-2	chr1	87653422	87654422	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	33610.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	4.36121355582802	4.04823398286039	4.23332829773338	4.079132643213	4.31245548003041	4.42955627445375	0.158098820317071	0.74084185563212	0.934712654423072
Merged-chr16-38472159-2	chr16	38471659	38472659	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	PB1D7|SINE|Alu	13226.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	2.99519524305327	3.11894230538912	3.20031565963651	3.36416948722856	3.51365938435306	3.44140393909999	1.41427444589263	0.025351805290661	0.188632121490237
Merged-chr5-24389499-4	chr5	24389005	24390005	+	938.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2638.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	2.55045416218448	2.32689487734101	2.59203971067804	2.32098240817601	2.42453108101261	2.21375480965584	-1.07303407066493	0.22616141523139	1
Merged-chr13-56173279-4	chr13	56172752	56173752	+	790.820801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168615)	TTS (NM_001168615)	5633.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	4.57399671944702	4.9022393288222	5.28641228096908	4.91667396550388	4.86693145866149	4.7088374451709	-0.232113190480773	0.591621949276728	0.877710165381539
Merged-chr11-121204401-4	chr11	121203907	121204907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-26.0	NM_001001333	238023.0	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	5.98409774776874	6.15090432337721	6.10505881565351	5.80952744364039	5.87910835438786	5.64880258729548	-0.50694459291456	0.0929485987504627	0.406223489865496
Merged-chr15-73641737-2	chr15	73641237	73642237	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16993.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.04618298562681	4.22447047060378	4.15342468117083	4.38461542618828	4.13836042651446	4.22205707345991	0.293973684253949	0.532327956148289	0.851971173271146
Merged-chr7-44854699-6	chr7	44854153	44855153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290695, exon 4 of 4)	exon (NM_001290695, exon 4 of 4)	-2493.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	6.97856737985146	7.09871186972707	7.35879763987379	7.29415270985991	7.37967012747364	7.60937861946347	0.420541273184674	0.0963797420580953	0.413870339947876
Merged-chr12-78749472-4	chr12	78748900	78749900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	CpG	453.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	8.17253129162252	8.46364528710018	7.8242230765257	7.97743927301459	7.97938305290728	7.5236777502516	-0.475792062089756	0.0817097887595251	0.378179336027509
Merged-chr12-86824187-4	chr12	86823695	86824695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60619.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.29747103429871	6.25437810636887	6.20240355809271	6.30948617919057	6.0702402476315	6.018158847726	-0.19018119123201	0.505490920930926	0.838150141458671
Merged-chr1-171561438-4	chr1	171560926	171561926	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2233.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	5.84558702870271	5.76948759281181	5.49794688352992	5.44679443848277	4.68898251979236	5.21320129481721	-1.10426001683465	0.00591621400250447	0.0690817197193927
Merged-chr18-6244745-3	chr18	6244240	6245240	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-3216.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	3.64871175975631	3.95096364189579	4.15693632546367	3.72226835646435	3.66424751781583	4.13897450034519	-0.243213346794125	0.667555935466642	0.90879890451381
Merged-chr6-135299198-3	chr6	135298681	135299681	+	903.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11203.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	4.54757214914513	4.82191128644329	4.88310968966421	4.00915932165151	3.71345900093875	3.9927702875106	-2.39503308507828	1.80415114616326e-06	9.07616738633328e-05
Merged-chr6-99028915-4	chr6	99028396	99029396	+	878.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-598.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.97881506830861	3.71310750843272	3.89756807290794	4.16711884295169	3.63377251320087	4.01589371544439	0.265425421676556	0.629541348059611	0.894317799828319
Merged-chr5-72161291-3	chr5	72160789	72161789	+	945.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 3 of 4)	intron (NM_178599, intron 3 of 4)	6900.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	4.04772993902835	3.7295007086341	4.0199939131702	3.550920037892	3.66768496772004	3.85186449688187	-0.797170420855485	0.145283918216712	0.508338649447163
Merged-chr2-153773739-2	chr2	153773239	153774239	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007896)	TTS (NM_007896)	-7140.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	3.46520280871687	3.34834998855802	3.761449559523	3.46792314210077	3.33228052311846	3.73488726331347	-0.0516757106286406	0.932362032440993	0.985087224393733
Merged-chr19-6418329-4	chr19	6417829	6418829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-409.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	4.97704791811125	4.65175728276524	4.91843487412869	4.78673504057502	4.82548006269813	4.75931204216642	-0.135731949595112	0.73359661821931	0.932153005448542
Merged-chr12-85601112-4	chr12	85600608	85601608	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	1090.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	6.59606323370955	6.06752286131105	6.59662585812928	6.32520116808574	6.45499920610021	6.63949890382559	0.0598816722161369	0.845079860710793	0.963760118842549
Merged-chr9-96449775-2	chr9	96449275	96450275	+	653.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	28900.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	2.6082014578117	2.81793551413964	2.71750536296996	2.7102996281324	2.73211404046969	2.96701217288828	0.446463305308158	0.547887895447598	0.859455567919717
Merged-chr19-32183286-4	chr19	32182793	32183793	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	L1MC4a|LINE|L1	27720.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.44373437784957	4.42213982432777	4.27411020998295	3.65444245581395	3.3993979699858	4.07002145637543	-2.05120662478899	0.000401565403976612	0.00881392082061454
Merged-chr9-70678868-4	chr9	70678373	70679373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007399)	promoter-TSS (NM_007399)	-109.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	6.31459435738757	6.44866035324231	6.26595885360118	6.42095559477206	6.38265516225522	6.47826431986361	0.121036850667197	0.65315406668052	0.903234894139151
Merged-chr3-100439687-2	chr3	100439187	100440187	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13282.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.51556911769614	4.57305034335941	4.00804813795488	4.56382922783645	4.59242347171223	4.38804763306341	0.300078265688973	0.534500891499498	0.853068627162717
Merged-chr1-125463051-4	chr1	125462489	125463489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27262.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.63626303717571	5.89239078447278	5.8261696792882	5.74491043479065	6.00795430435901	6.04906456911741	0.268221227382541	0.391794927120456	0.77074421294513
Merged-chr12-11276722-7	chr12	11276209	11277209	+	965.2551269999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 4 of 9)	(TG)n|Simple_repeat|Simple_repeat	10823.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	4.32716378961821	4.3558886734601	4.95223958158823	4.68603138066995	4.38120587336174	4.88531037535967	0.22100261698208	0.646558726300734	0.90100465546023
Merged-chr7-100854717-2	chr7	100854217	100855217	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8696.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	3.64072997411958	3.52402437419831	3.79291702935655	3.74186081960458	3.63173881029427	3.81277872261918	0.256078077785661	0.639679133018553	0.898199312621371
Merged-chr6-71279594-4	chr6	71279090	71280090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	7571.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	4.44009254512887	4.19007981338201	3.85406377229692	4.37507876147711	3.93627837701432	4.03562021970466	-0.170045569465007	0.750641065951502	0.937588367655538
Merged-chr3-133111891-3	chr3	133111411	133112411	+	758.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027927)	TTS (NM_027927)	-19872.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	2.72037704430819	2.73670273986376	2.87265438789893	2.63362547389638	2.50505492451969	2.88683853539303	-0.524379329447396	0.49361256141805	0.831444239973949
Merged-chr2-93600840-2	chr2	93600340	93601340	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41594.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.65814359850205	4.419937172321	4.70553600205471	4.53827088921435	4.19950683232803	4.65784722963151	-0.316558416392565	0.484410698549496	0.826842476948103
Merged-chr5-127614998-5	chr5	127614480	127615480	+	695.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	2412.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	6.64706670128366	6.86686281813875	6.83505936224909	6.75656333139715	6.97665839091551	7.08155857606049	0.243345363339764	0.347967038240323	0.735982909356061
Merged-chr6-121225127-4	chr6	121224613	121225613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	14379.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	5.38605755753844	5.43505784443642	5.35278920504743	5.99998281413046	5.79321619174447	6.02172008317213	0.996053443873321	0.00181426760157238	0.0286625369676042
Merged-chr10-117810002-1	chr10	117809502	117810502	+	595.0	f0_balb.idr	Intergenic	Intergenic	-17297.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.60989236926132	2.50183058751276	2.77157163219697	2.53972204029498	2.66587307795821	2.95834206421079	0.536952586106651	0.492395844600327	0.83104217378051
Merged-chr7-19922157-3	chr7	19921666	19922666	+	689.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	3.15447206930331	3.13390264382045	3.24520231548488	3.38898536114495	3.07193448504231	3.5305949176056	0.654295651196419	0.312640878143601	0.7072926098035
Merged-chr11-52064584-3	chr11	52064073	52065073	+	623.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	B3|SINE|B2	-34251.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	3.56290460619763	3.44694820620685	3.55848572952635	3.56948382817464	3.92747066636479	3.88458860348965	0.967723429427668	0.0857291219500897	0.38780845815065
Merged-chr10-34193850-4	chr10	34193328	34194328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	13723.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.90528380741849	6.81460274562155	6.99591504343516	6.95918758293372	6.77207006227827	7.09164867844679	0.0556536094138475	0.826802890624831	0.959278302444461
Merged-chr10-22301064-4	chr10	22300472	22301472	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	MTC-int|LTR|ERVL-MaLR	-5748.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	5.33327930476761	5.54412502081737	5.36646318313648	5.02596789036665	4.85699262754777	5.17895628612644	-0.833589228017128	0.0213621292037774	0.168675274889724
Merged-chr10-125387165-1	chr10	125386665	125387665	+	543.0	f1_balb.idr	Intergenic	Intergenic	-58202.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.50839849689729	5.20373263205045	5.39017816654911	5.04700983967078	5.00573515658087	5.10389429968741	-0.662190217256307	0.0651233767255584	0.332770809074109
Merged-chr2-5592630-4	chr2	5592133	5593133	+	831.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	83413.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.02619243634298	4.85170305338056	4.77043092983765	4.12830539418773	4.23970652283964	4.42722580671539	-1.56059011125042	0.000357112085378893	0.00802879827079356
Merged-chr11-62555539-1	chr11	62555039	62556039	+	773.0	f0_balb.idr	Intergenic	Intergenic	3808.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	4.28928547112799	4.05925285176051	4.4631121451675	4.18830651521285	3.73771302482579	4.19545322145015	-0.632466102998342	0.224304908460318	0.619090360474606
Merged-chr9-50617202-5	chr9	50616692	50617692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028300)	promoter-TSS (NM_028300)	-129.0	NM_028300	72614.0	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	7.05251494796088	7.09066767066674	7.11783942847467	7.22955282015877	6.76574595337889	7.04820343886215	-0.0944466821461133	0.716376080937408	0.926569584146506
Merged-chr18-61110476-2	chr18	61109976	61110976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 4 of 22)	exon (NM_001037859, exon 4 of 22)	4904.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.01601168837613	5.11578879692019	5.64528125557121	5.56950551844094	5.54213057436802	5.75549151767791	0.671642087388329	0.0720794096049605	0.352624479321406
Merged-chr7-99887510-4	chr7	99886987	99887987	+	863.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	28269.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	2.82957379259615	2.46022123249915	2.67304147003248	2.66731277831754	2.74106246434081	2.86880990251288	0.504769496120109	0.517213288235844	0.844527100635531
Merged-chr3-115714378-3	chr3	115713882	115714882	+	974.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007901, intron 1 of 1)	intron (NM_007901, intron 1 of 1)	673.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.20485826028524	4.5022209051503	4.76640109809612	3.89871048030377	3.72500391876087	3.80987742206938	-2.01360770106453	0.000132099433289224	0.00358737912700056
Merged-chr19-11824575-2	chr19	11824075	11825075	+	689.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	4449.0	NM_146936	258938.0	Mm.451671	NM_146936	ENSMUSG00000048292	Olfr1417	MOR266-2	olfactory receptor 1417	protein-coding	3.92093932197448	3.66037605067014	3.88403843591951	3.79357223797042	3.83020902983367	3.80271201678034	-0.0453486278608244	0.93129257669157	0.984851910381307
Merged-chr9-7828922-4	chr9	7828397	7829397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	RLTR24B_MM|LTR|ERV1	7909.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	4.72367158059217	4.57318197415278	4.55596683745628	4.857511992178	4.96449114757012	5.2000132166626	0.868688465830481	0.031027123249426	0.213194074973539
Merged-chr11-54067341-2	chr11	54066841	54067841	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	1676.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	6.15393921408414	5.70000366129451	6.08195634205136	6.0158109414797	6.1781131635704	5.96116828670429	0.123678810590848	0.695042390929539	0.919230570201314
Merged-chr15-76900304-2	chr15	76899804	76900804	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025536, intron 1 of 1)	intron (NM_025536, intron 1 of 1)	363.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	5.15131942478903	5.16405886427638	5.60191058017903	5.25744305036803	5.10846987717135	5.84880535762332	0.235250307459171	0.565752116476999	0.86688237163883
Merged-chr6-34866895-2	chr6	34866395	34867395	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	B4|SINE|B4	3749.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.45896545174098	6.44726130770241	6.2991777218931	6.27520823966391	6.50732370218823	6.50907237542343	0.0424465892615013	0.876477394797671	0.971334744650699
Merged-chr17-50120292-4	chr17	50119815	50120815	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	70182.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.07308090933538	4.2143666921453	4.21017060435473	5.05934426895342	5.22341609879516	4.77726051831617	2.15552190053999	1.08024346043568e-06	5.78037928333966e-05
Merged-chr4-120872583-3	chr4	120872090	120873090	+	849.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_182929, exon 2 of 8)	5' UTR (NM_182929, exon 2 of 8)	17791.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.70638142393568	3.77898944371402	3.74759324868073	3.54230366325176	3.23664065985339	3.38195874851662	-1.30772154373148	0.0266619520206194	0.194314417424166
Merged-chr4-63582852-2	chr4	63582352	63583352	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 9 of 9)	intron (NM_144905, intron 9 of 9)	17912.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	3.15296140416918	3.25245587022756	3.73775438513519	3.08100049157441	3.07238420769992	3.52365974453501	-0.635290122553595	0.359206150833809	0.745440547165336
Merged-chr4-83525413-4	chr4	83524900	83525900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355378)	promoter-TSS (NM_001355378)	-145.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	6.64358488953767	7.03487725681782	6.52952036347221	6.78852694525196	7.11856503486022	6.62533542290959	0.166545861140779	0.577238535655719	0.87205828500771
Merged-chr7-101450584-4	chr7	101450077	101451077	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	57.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	4.23237721610895	4.19135817061808	4.03109258324044	3.60190044376754	3.52364447377275	3.74433638244565	-1.76632647931936	0.000978292131895583	0.0177152843766633
Merged-chr4-101254221-4	chr4	101253730	101254730	+	772.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	11052.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.40663702913048	5.70886318404866	5.55566758020105	5.69992247570718	5.37152159830663	5.72467537538075	0.0634535512050147	0.852806212756037	0.965544656676077
Merged-chr18-73541772-4	chr18	73541273	73542273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30932.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	7.66186857464945	7.75541804257828	7.52113751902296	7.36559763641613	7.60308898201187	7.25796932131494	-0.332295154660804	0.166827977960671	0.54240433228749
Merged-chr14-79511770-4	chr14	79511276	79512276	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	-3898.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.05543463955861	5.10319180260498	5.02338293417149	5.0383739674677	5.18211958782487	4.94198170962552	0.0089830742375346	0.980516337426515	0.995512982807197
Merged-chr7-67431238-4	chr7	67430750	67431750	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58392.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.81458992667873	4.62731613418975	5.15964990001004	4.57312965968604	4.74606748753883	5.16261444984241	-0.0761714285542746	0.863211071133558	0.968208989562349
Merged-chr9-104814911-4	chr9	104814414	104815414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	-238354.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	5.38784873841153	5.60526367001154	5.78292227292694	5.16442575273043	4.87880541166989	5.00075292510443	-1.16105102191221	0.00151217032969167	0.0248518010651757
Merged-chr16-57483065-4	chr16	57482598	57483598	+	983.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66144.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.94189235885948	4.56613575134671	4.63504855327109	4.60648306911816	4.35091667693638	4.49122068631963	-0.595401847354384	0.171210150834398	0.549224104532435
Merged-chr3-96501995-2	chr3	96501495	96502495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23190.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	5.23705119576104	4.69383731375243	5.30464084094437	5.96168847125947	6.03699603358288	5.84193680659362	1.62935274708608	1.0355430573051e-05	0.000413660425886906
Merged-chr10-81383398-2	chr10	81382981	81383981	+	656.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-947.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	3.51867849176045	3.14736250289542	3.74235980584936	3.61018488605415	3.49673893157091	3.81105787700816	0.544418590495394	0.387009805027594	0.767390671040563
Merged-chr2-27737596-2	chr2	27737096	27738096	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	27013.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.16960189462712	5.61103418058426	5.7755700938971	5.12389141825794	5.3829679152476	5.71806898723219	-0.216352909016579	0.578924223644351	0.872437129840066
Merged-chr15-96698165-1	chr15	96697665	96698665	+	685.0	f0_c57.idr	intron (NM_175121, intron 3 of 15)	intron (NM_175121, intron 3 of 15)	1563.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.53517145899238	7.03643841228181	6.73454983821212	6.71318970527645	6.98907649549792	6.761847833213	0.0661584779251792	0.815015913313009	0.956370078970016
Merged-chr8-72320927-4	chr8	72320438	72321438	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	1876.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.32651561490477	7.18880600248923	6.70538627742348	7.26005143674255	7.55770625119757	7.69688217058339	0.598547445374108	0.0359978099118621	0.233279265354067
Merged-chr15-102245580-2	chr15	102245080	102246080	+	668.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	920.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	3.39472545324241	3.40017759735796	3.56461785714831	3.95599863289204	3.50128717528919	3.74106824843277	1.028701744353	0.07854640468192	0.370168171770118
Merged-chr15-25392632-4	chr15	25392126	25393126	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	L1MC1|LINE|L1	21138.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.57980429078021	5.71298478115312	5.74752216426329	5.73861424817214	5.87083123400235	5.53362085879878	0.101009064159575	0.753212877597418	0.938549578325581
Merged-chr5-43786232-2	chr5	43785732	43786732	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4083.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	4.231960984606	4.10612054889275	4.65428302352722	4.07021563409675	4.08730826776312	4.24853912054058	-0.564946316902838	0.253142830208525	0.650529930386701
Merged-chr7-111024412-4	chr7	111023909	111024909	+	866.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4542.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	3.1078474158021	3.41148713584954	3.33430154496675	3.32859173807806	3.13523601909182	3.05324451187327	-0.465958683708574	0.477041688057577	0.823093515394398
Merged-chr12-103338707-8	chr12	103338182	103339182	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	17319.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	6.74266494489942	6.41631309242223	6.08982478604528	6.96406656008896	7.00950838387872	6.10222476495663	0.493552429587799	0.175656724044721	0.555698392534067
Merged-chr11-78697535-4	chr11	78697033	78698033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-108.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	6.77460326940126	6.90826205254084	6.5323693559339	6.88137164237261	6.87206979644002	6.53652758281619	0.0389697498178242	0.887447809015553	0.973836995667151
Merged-chr15-12322582-2	chr15	12322082	12323082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1086.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	7.04878832438003	7.21460476940608	6.88197892925363	6.97736521342651	7.10827410023063	6.91085668697756	-0.0854875376794053	0.73470695930934	0.932597635580944
Merged-chr4-118136237-4	chr4	118135742	118136742	+	935.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161823)	TTS (NM_001161823)	-1296.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	6.7910395460909	7.18692273662855	7.10937356038979	7.01527093087075	7.25256527142481	7.01104836813183	0.0980605291002247	0.708773619803516	0.92375127577894
Merged-chr2-59246770-2	chr2	59246270	59247270	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	Lx9|LINE|L1	85920.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.0948930677616	2.98473243881536	3.22411654604434	3.1451989107665	2.95481404089553	3.12602895710032	-0.1150444557772	0.861899578344621	0.967996224966109
Merged-chr11-119925410-4	chr11	119924916	119925916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	11606.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	6.09235029829894	6.28042489717893	6.43695531564546	6.04492307911952	6.22747517507257	6.25577982576662	-0.153907443297839	0.596109224424037	0.8798867145239
Merged-chr2-120296316-4	chr2	120295771	120296771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7202.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	5.99104659258411	5.6770753654614	5.56307025357321	6.37368866082939	6.33821894018444	6.16511225581196	0.914677405522751	0.00336023374898586	0.0457586854404625
Merged-chr9-58899985-7	chr9	58899500	58900500	+	883.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042752, intron 20 of 27)	intron (NM_001042752, intron 20 of 27)	76488.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	6.62711357716311	6.76414462497314	6.29696328280257	6.81201080377457	6.74172362607787	6.39902490473004	0.131256611466713	0.653221893485831	0.903270202473883
Merged-chr10-117839582-1	chr10	117839082	117840082	+	563.0	f0_balb.idr	intron (NM_024457, intron 1 of 7)	Charlie1a|DNA|hAT-Charlie	6392.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.48745032509613	6.27070246681637	6.43756708542297	6.58392964793546	6.82443240434461	6.23586785751898	0.298139558170761	0.315694168252314	0.709931731669551
Merged-chr11-121082430-4	chr11	121081921	121082921	+	941.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	5.65115367524337	5.63095750447171	5.79581393602969	5.28569577451223	5.79028527066297	6.01432545026153	0.0669781157422195	0.851275628709978	0.965211450762173
Merged-chr7-120635211-4	chr7	120634694	120635694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	5.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	7.1867007676891	7.41687375115559	7.3442018818619	7.2340033438402	7.23745933847178	7.23128651295839	-0.126369540013871	0.588085965434931	0.876189962253075
Merged-chr13-34088392-3	chr13	34087878	34088878	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 4 of 4)	intron (NR_046184, intron 4 of 4)	-10370.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	4.0448644457248	4.0954265054613	3.90109680088166	3.82029899337828	3.99226378537604	3.58100391795813	-0.610509507081912	0.262609653726793	0.660616865716327
Merged-chr11-77346693-3	chr11	77346189	77347189	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 2 of 14)	intron (NM_177710, intron 2 of 14)	-1591.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.73153380553253	4.24485765191526	4.55986102359834	4.65210062461992	4.57095037248367	4.50027574541837	0.122914627524641	0.783090390048078	0.94689408341983
Merged-chr19-60940136-4	chr19	60939640	60940640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	50391.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	6.01566195724	6.25051875023385	6.16204336320829	5.84644648520498	5.73563872182429	6.31848529715884	-0.29049325471839	0.370960200896173	0.755152450059176
Merged-chr5-112326275-4	chr5	112325765	112326765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-104.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	8.72500912034194	8.89616763842957	8.49296795415446	8.54641521285386	8.72567317118441	8.29681879157919	-0.246790728442109	0.295337443656733	0.692218191368961
Merged-chr2-167839435-4	chr2	167838937	167839937	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92890.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.16089686685379	2.90501815606436	2.9045184219141	3.30879514806169	2.98708293561792	3.10417931712414	0.61924924612396	0.371654254726299	0.755770253366878
Merged-chr18-38436500-3	chr18	38435997	38436997	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	L1M4|LINE|L1	17590.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.27644311641073	4.32868654933545	4.0260757082756	4.34461203105682	4.20367686728568	4.66125670129856	0.479815404978687	0.321392327766171	0.714837665357421
Merged-chr8-117339589-4	chr8	117339061	117340061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-9609.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.33950300991972	8.15538958969067	7.73341704938562	8.17412174720735	8.40593078086424	7.89569926103975	0.104379998178236	0.697281435275961	0.919874864928276
Merged-chr7-4925123-4	chr7	4924629	4925629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173008)	promoter-TSS (NM_173008)	-715.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	3.88555980840482	3.11445570612439	3.54124543236989	3.75606373316375	3.30771573796808	3.76969485928501	0.241686073548953	0.724954686415502	0.929475409375828
Merged-chr7-110190263-4	chr7	110189757	110190757	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31446.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	7.11275239278324	7.36445456835512	7.43351230092783	7.04382770715359	7.31774281043496	7.33364194698864	-0.102393923234201	0.683038138366943	0.91523316791368
Merged-chr9-86464734-4	chr9	86464247	86465247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027394, exon 1 of 10)	exon (NM_027394, exon 1 of 10)	169.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	4.90434766386414	4.72836884366191	4.45470056326803	4.69908057741573	4.16633452353113	4.52336741771875	-0.578858756200937	0.213792002959437	0.606900020244801
Merged-chr7-122127962-3	chr7	122127429	122128429	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289842, exon 4 of 12)	exon (NM_001289842, exon 4 of 12)	5017.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	5.97913610329729	6.4646419943526	6.26960614360191	5.85958874515989	6.14829713794861	6.27101809997505	-0.259235314926888	0.413545030825079	0.785192016358461
Merged-chr11-87024898-2	chr11	87024398	87025398	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-31136.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.65018879586178	6.64123956794116	6.9057741068929	6.40271789646955	6.57300740125308	6.5188268160187	-0.362738757276922	0.173294510341154	0.552026707111778
Merged-chr3-136793723-1	chr3	136793223	136794223	+	587.0	f0_balb.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	123657.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	2.91288272954259	3.07550872117831	2.96789335014067	3.16141309479847	3.07991793684672	3.16007704691765	0.645036530137572	0.329941568563963	0.721575368283182
Merged-chr8-120112797-4	chr8	120112288	120113288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-1364.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	8.57639236983962	8.34136720465303	8.0091577615336	8.54607946701125	8.98895547342788	8.08039168973314	0.368819516904543	0.217659207557158	0.611651041621615
Merged-chr1-180256335-4	chr1	180255837	180256837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128605)	promoter-TSS (NM_001128605)	-37.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	7.08124369663664	7.23956527282115	7.12483745823097	7.15149126482512	7.13784780543238	7.0934341999941	-0.0345406781750566	0.883070105310967	0.973347392063704
Merged-chr6-34156245-2	chr6	34155745	34156745	+	625.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021435, exon 10 of 10)	3' UTR (NM_021435, exon 10 of 10)	20809.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	4.53467393977198	4.30409996877624	4.33425873027308	4.57102038896088	4.51078632587969	4.97547376456079	0.716828018065431	0.11162254839149	0.446313714155454
Merged-chr1-165643896-3	chr1	165643401	165644401	+	765.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9360.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.98077211573159	6.04580993205516	6.52051642653237	6.0880607074686	6.53562524336304	6.17124577843054	0.15902053876531	0.627237552917857	0.893103499489871
Merged-chr5-113645799-4	chr5	113645257	113646257	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2154.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	6.93796952367158	6.72265437644797	7.04523527797231	7.14276044542726	6.93644208786683	6.72793166720011	0.0759186056823126	0.776594359529649	0.944890351789015
Merged-chr4-56121844-4	chr4	56121296	56122296	+	947.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-589321.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.37010650460591	4.19333523270623	4.91537983347305	4.80300507416516	4.44411828460712	4.80969918440977	0.413420746317774	0.392788741393618	0.771320548318037
Merged-chr19-16139876-4	chr19	16139359	16140359	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7028.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.78433197853785	8.05547552539899	7.60020972373886	7.69705266593375	7.7479190909091	7.71296054990431	-0.164886009002596	0.486674569545358	0.827985697457807
Merged-chr19-29400717-2	chr19	29400174	29401174	+	692.208374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10245.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	3.36912018344236	3.30894518688376	3.34274710317884	3.27176370027005	3.3041514570692	3.24215562131817	-0.262007631033195	0.665158514511259	0.907762144972922
Merged-chr6-113331807-2	chr6	113331307	113332307	+	633.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149720, exon 4 of 7)	non-coding (NR_149720, exon 4 of 7)	4831.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	3.38180990215441	3.41530064254422	3.60177276964806	3.69118188610893	3.61139289413242	3.72287228709074	0.753114037955088	0.182119081413464	0.564722535822149
Merged-chr15-81103049-2	chr15	81102549	81103549	+	927.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1998.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.55827428580051	6.511896543768	6.39299262100891	6.3163442464945	6.35573677589281	6.5932486106341	-0.121677069914805	0.654676922103354	0.903878958900373
Merged-chr13-5714901-2	chr13	5714401	5715401	+	860.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143191.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.03873994897562	7.35007600762965	7.02764172933122	6.96381002157282	6.94555379768479	6.72869265728876	-0.400791482523006	0.121557715517866	0.46638882246556
Merged-chr14-76180216-2	chr14	76179716	76180716	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	69325.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	5.54396525751896	4.98760525812423	5.36042739188163	5.2319735933511	5.10366665276636	5.33327597585895	-0.195717726894031	0.606658501645507	0.884244059153911
Merged-chr14-70443343-4	chr14	70442834	70443834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164082)	promoter-TSS (NM_001164082)	-107.0	NM_001164082	67065.0	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	6.89389072690535	7.0723138006949	6.64024907317578	7.09638179222972	6.82009108949552	6.81410008507044	0.0418867887556524	0.877152619510563	0.971503123567225
Merged-chr12-112618126-4	chr12	112617637	112618637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.58414735925858	7.45201263320314	7.42061970828073	7.47159146066686	7.58661115216481	6.74411846553387	-0.230762359871273	0.438944067899343	0.800937323779458
Merged-chr1-92215435-3	chr1	92214936	92215936	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35095.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	3.63870893051409	3.74240126648807	3.86521743228377	3.73131088007097	3.75323460319846	3.62686898289915	-0.125815871443032	0.815341479081049	0.956370078970016
Merged-chr13-45390791-4	chr13	45390228	45391228	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 1 of 6)	intron (NM_153789, intron 1 of 6)	986.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	8.12778301079962	8.07926346212537	7.90616768459216	8.04424862376059	8.1532940717182	7.65306190984723	-0.0961895092545383	0.691388266633403	0.918275389711443
Merged-chr14-49173424-2	chr14	49172924	49173924	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027492, intron 2 of 4)	intron (NM_027492, intron 2 of 4)	1178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	3.40692166872818	3.71096847686262	3.30269946480838	3.71292335655224	3.6573840543713	3.55448985069802	0.53040881156685	0.377113060970064	0.759616521190546
Merged-chr12-73723234-4	chr12	73722729	73723729	+	973.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	ORR1D1|LTR|ERVL-MaLR	138433.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.41271053551092	4.61410756947445	4.5390435819005	4.1311802221635	3.95957372052601	4.31293005898979	-1.06229602854821	0.0225606909862483	0.174870048959828
Merged-chr7-25731528-3	chr7	25731028	25732028	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 10 of 14)	intron (NM_144922, intron 10 of 14)	-12475.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	3.59312852283855	3.97849645311785	4.0175517905714	3.63166890513528	3.51089575863647	3.75233348689292	-0.810561569082563	0.150957108783017	0.5182047532504
Merged-chr13-5779052-4	chr13	5778575	5779575	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79017.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.07673731378148	8.44173578525534	7.36457315705377	7.72024981838267	8.2076381492711	7.5683612032308	-0.248858059022684	0.458151515671043	0.812896892900026
Merged-chr3-57673729-4	chr3	57673185	57674185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033349, intron 2 of 3)	intron (NM_001033349, intron 2 of 3)	18852.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	4.1042542524162	4.20629642290269	4.06313271849008	4.29200778660979	3.87026845844125	4.27067715038574	0.0601868925563308	0.904069645943632	0.978000300315631
Merged-chr16-75887010-1	chr16	75886510	75887510	+	1000.0	f0_c57.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22256.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	6.45062111340955	6.46603086177451	6.37849678372558	6.6459066477383	6.78922951901479	6.61896185442933	0.410660226697832	0.114345986416986	0.451630551943065
Merged-chr19-47855626-4	chr19	47855126	47856126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010362, intron 2 of 5)	intron (NM_010362, intron 2 of 5)	653.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	7.49973005884171	7.92402448577049	7.50956320968842	7.40422545429479	7.57740203391431	7.21735629301056	-0.364725475127965	0.16099466563526	0.533682780680334
Merged-chr7-14513765-1	chr7	14513265	14514265	+	609.0	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	-20839.0	NM_001184981	638251.0	Mm.482063	NM_001184981	ENSMUSG00000094156	Sult2a7	EG638251|Gm7231	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7	protein-coding	2.85716867986349	2.7225438634541	2.85833140515057	2.68289840790624	2.82231874521252	2.74752905911127	-0.299241551697128	0.679914138575747	0.914056767175611
Merged-chr2-75725097-4	chr2	75724611	75725611	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20448.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.40577667678808	5.32021645901475	5.62027820972846	5.56584866680679	5.7555107626877	5.60138208485018	0.387501823644254	0.241558468565893	0.638636461346638
Merged-chr4-40777334-7	chr4	40776842	40777842	+	896.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19457.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.9585180484366	4.56642571797948	4.84029029791728	5.14758745798506	4.87631457679957	4.8295642491119	0.362519429530759	0.374703593896612	0.758118627242714
Merged-chr19-36818349-1	chr19	36817849	36818849	+	574.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-15883.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	5.48967874190031	5.46569735942112	5.09206706527441	5.78650388803091	5.51556002202181	5.30218358522423	0.348942788841711	0.3405334950243	0.730173453949955
Merged-chr2-153109062-4	chr2	153108556	153109556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	588.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	7.16106034390579	7.24397585184723	7.67433093885274	7.25782821822967	7.3651526073118	7.51539195533571	0.0137293089814181	0.958281790655909	0.990000537228272
Merged-chr14-51165506-4	chr14	51165055	51166055	+	775.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3295.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	4.45791929032387	4.83022013272527	4.99513455932958	4.88081983509541	4.79338515105788	5.7246771841075	0.894499580602061	0.0635105870739416	0.328378110311846
Merged-chr5-121843506-6	chr5	121843036	121844036	+	938.205566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-5461.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	5.91756526867311	6.1294580822482	5.65738560938592	5.57656498283977	5.52669135244948	5.54701891716052	-0.688158084234128	0.0346909705688362	0.228354525930369
Merged-chr2-90565751-2	chr2	90565221	90566221	+	751.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	14926.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.88433125044488	4.86080084972128	5.46501897980278	5.50779815926559	5.33330794467505	5.41562465184603	0.676347954462642	0.0827985224368658	0.380635329001477
Merged-chr10-8240317-3	chr10	8239829	8240829	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	278496.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.98765375745482	4.88616722626577	5.22104578542031	5.17897764085012	5.13822824255734	5.2841885573	0.354351671948709	0.335394746865216	0.725511519189957
Merged-chr17-69145356-2	chr17	69144856	69145856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-11388.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.13175216741478	5.19918818885253	5.32730363036146	5.61868482277499	5.25126310627885	5.32876742930331	0.382549886262586	0.282420123802255	0.680398797305519
Merged-chr18-53153372-1	chr18	53152872	53153872	+	743.0	f0_c57.idr	Intergenic	Lx7|LINE|L1	-22920.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	2.99581530760666	2.91862321014095	3.05875064368084	3.95729870636751	3.61745465569138	3.56294400132776	3.27978208266194	6.72989466751162e-06	0.000285267995666993
Merged-chr4-105643207-3	chr4	105642691	105643691	+	971.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	485844.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.67716871295449	6.14102015922397	5.86605010312843	4.67531660904787	5.14766658593691	4.70795444767977	-2.02298643227862	1.07470547432019e-06	5.75444614589668e-05
Merged-chr14-120476768-2	chr14	120476268	120477268	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1693.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.4330790564885	4.5039675470799	4.4027308163232	4.63278473520794	4.53437455424393	4.07618583706203	-0.00520478969431216	0.991150908654063	0.99819885759976
Merged-chr14-62332124-4	chr14	62331677	62332677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 1 of 10)	CpG	109.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	7.0387474132663	7.41227356442103	6.99685866355367	7.26869203011289	7.32033945801339	6.60052312624919	-0.0813206628188231	0.790948237920738	0.949685728440242
Merged-chr17-29094628-6	chr17	29094132	29095132	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	CpG	863.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	7.05225302359867	7.13191926314686	7.10360433861089	6.88375952596713	6.86049600065617	6.24325482170501	-0.593783338000288	0.0412857839218262	0.253790448327964
Merged-chr4-108348666-4	chr4	108348164	108349164	+	946.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	20512.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	4.54327683095822	4.56765314727986	4.73448062828849	4.79090812140073	4.98619619832067	4.55381396793203	0.445438226110977	0.28819096926436	0.685555138616531
Merged-chr2-4509963-4	chr2	4509463	4510463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-49791.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.46296239949328	6.3138386006976	6.21639334424677	6.631216786818	6.68360363612516	6.49453954677409	0.435649061855825	0.107032210608375	0.436618615995709
Merged-chr7-114164500-4	chr7	114164053	114165053	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-46772.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.77275023556035	3.67886749239199	3.39671239264309	3.89816219720183	3.81935237517369	4.0557958225211	0.934671284777898	0.100758407782958	0.42330130237324
Merged-chr8-88209952-4	chr8	88209475	88210475	+	797.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	(TG)n|Simple_repeat|Simple_repeat	10762.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	3.91763927712364	3.73397053031799	3.80914960908461	3.73336718676939	3.87661049073832	3.6106514029102	-0.225478679589103	0.676170566723159	0.912421384593547
Merged-chr14-69732673-4	chr14	69732154	69733154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134078)	promoter-TSS (NM_134078)	-84.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	6.95621545240183	7.48120843752135	6.99128707030561	7.11775098382545	7.2282552640539	6.99343961257773	-0.0795089101507072	0.773162437146098	0.943981747443949
Merged-chr15-86212388-4	chr15	86211910	86212910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2049.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.09010712490266	6.76041341962642	7.00346991438056	7.17033157338155	6.98422742121169	6.8635903285151	0.089838062377846	0.730007360847236	0.930720808358785
Merged-chr12-69331359-4	chr12	69330853	69331853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 17 of 32)	B3|SINE|B2	25823.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.14726561199638	5.0104639146979	5.36925232570781	5.08065781694828	5.53387202996436	5.51602650817543	0.440839082445342	0.240216380330748	0.637248121359463
Merged-chr19-4115485-2	chr19	4114985	4115985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276284, exon 4 of 6)	exon (NM_001276284, exon 4 of 6)	6090.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	3.07175753509002	2.88759051792161	3.52671195830205	3.31032216166549	2.83895063601325	3.23290882618397	-0.181164389098631	0.806681531513977	0.954305371105249
Merged-chr3-95890619-1	chr3	95890119	95891119	+	567.0	f1_balb.idr	intron (NM_153513, intron 1 of 5)	MIR3|SINE|MIR	1386.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	3.87825791749759	3.96372712006428	4.49506016667786	4.15158322585859	4.07339844190543	4.32504254341509	0.146367439621753	0.778841087101791	0.945531874926186
Merged-chr1-154041076-2	chr1	154040574	154041574	+	740.166626	f0_balb.idr|f0_c57.idr	Intergenic	MLTR14|LTR|ERV1	141145.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.04878460326447	3.99554929330149	4.36159453513628	4.10200419186913	4.00305438454694	4.21759267632133	-0.0875983718625978	0.858477358624179	0.966933063363181
Merged-chr2-4566413-2	chr2	4565913	4566913	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	6659.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.24783832495259	5.67158475058465	5.65654437659574	5.7897257279899	5.9878841347482	5.6647206120841	0.538186924184772	0.115040474739821	0.452801315520848
Merged-chr6-146888449-4	chr6	146887957	146888957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170433)	promoter-TSS (NM_001170433)	-37.0	NM_001355728	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	6.46905043646836	6.70163011809371	6.32749024342934	6.62353324157178	6.16152384684711	5.78455633073754	-0.437865952076537	0.199645369264652	0.588238275332742
Merged-chr16-3885638-4	chr16	3885081	3886081	+	868.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	962.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	5.55354113172649	6.01540298674819	6.16316624021217	6.3240473415122	6.28237026827074	6.00457248165004	0.493987829085739	0.134000260245582	0.489416805131876
Merged-chr14-64639763-4	chr14	64639258	64640258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12773.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	6.00245895517319	5.94070555525847	5.60619816109735	5.70573831025671	5.72751171756461	5.4222233247484	-0.426018280167971	0.199096161416174	0.587481591514486
Merged-chr11-23772599-2	chr11	23772099	23773099	+	917.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.5367095128937	3.09783411364999	3.30297331015204	3.24425752397114	3.2966178151262	3.48392895234643	0.0565563478795464	0.929682074760769	0.984210069653274
Merged-chr1-60098283-4	chr1	60097796	60098796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199061)	promoter-TSS (NM_001199061)	49.0	NM_001285463	241066.0	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	6.93483777747947	6.9992778707621	6.82605777384263	6.99211860376591	7.08049120781606	7.13037537541715	0.213749692735648	0.377011172144233	0.759572532972818
Merged-chr2-144550813-3	chr2	144550311	144551311	+	961.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015754)	promoter-TSS (NM_015754)	48.0	NM_015754	26450.0	Mm.440564	NM_015754	ENSMUSG00000027428	Rbbp9	Bog	retinoblastoma binding protein 9, serine hydrolase	protein-coding	4.34880185933323	4.49223559923218	4.26388334178276	4.22085157413787	4.39302139528683	4.42072368943879	-0.0807215127098428	0.857555607970665	0.966767080388296
Merged-chr3-30857225-1	chr3	30856725	30857725	+	549.0	f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	1275.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.86686762634958	4.1367140554362	3.95470571552061	3.78647728750969	3.75525452612253	3.97521581733699	-0.491649831371845	0.341970539295683	0.731142095278512
Merged-chr8-119817706-4	chr8	119817220	119818220	+	941.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	(ACCTG)n|Simple_repeat|Simple_repeat	22859.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.88599345256803	4.62894832216022	4.86834408083037	4.93902717187795	5.0715103064954	5.10712088645536	0.538924392043705	0.162690159987539	0.536188662408322
Merged-chr17-71195239-4	chr17	71194742	71195742	+	947.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-9412.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.86547664793302	5.70244869326538	5.64253052685987	5.61831982494031	5.75129564876856	5.59237620780632	-0.151761441980745	0.631409084976269	0.895122791781359
Merged-chr5-147896035-4	chr5	147895547	147896547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1232.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	5.99946827188557	5.99107446943254	6.1415568950635	6.18021657903739	6.53919022843329	6.61964308577552	0.69698614580257	0.0177295238053125	0.149104327551288
Merged-chr13-112361822-4	chr13	112361312	112362312	+	986.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 8 of 11)	L1MD3|LINE|L1	73294.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.86164999992103	3.84348245864545	3.61866799600808	3.4928825100974	3.5294163067409	3.63534894292882	-0.810914161410963	0.144774259228429	0.507621952799257
Merged-chr12-59010844-2	chr12	59010344	59011344	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009147, intron 1 of 19)	(TG)n|Simple_repeat|Simple_repeat	1173.0	NM_009147	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	3.76889538435462	3.67491771710621	3.66649699248247	3.86795503197197	3.54822940449953	3.83994996210945	0.157401422518335	0.77411689499572	0.944288018395377
Merged-chr5-130221783-2	chr5	130221283	130222283	+	945.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-552.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	6.08332585800862	6.51247788202223	6.1858308367067	6.14891762423071	6.30275874904745	5.97195676858318	-0.203453337060317	0.508438724763402	0.839818423824339
Merged-chr8-75101061-2	chr8	75100561	75101561	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010442)	TTS (NM_010442)	7443.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.54380435282133	3.31061036646369	3.83086739791024	3.40656382020503	3.44925751729935	3.75902325182489	-0.105672103561088	0.862997040630078	0.968149570765519
Merged-chr3-20035197-4	chr3	20034690	20035690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146324, exon 1 of 9)	exon (NM_001146324, exon 1 of 9)	120.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.61847622403956	6.48759018735996	6.3240286441526	6.62354727733875	6.42618808500085	6.36395884958449	-0.0182283419860209	0.947313787052859	0.988008807662239
Merged-chr7-118484207-4	chr7	118483708	118484708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033380)	TTS (NM_001033380)	7767.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.50331771565648	7.58485457154955	7.30973084218179	7.54471941641756	7.68237857767635	7.34387304634324	0.0903520361378478	0.707920688307739	0.923606271223831
Merged-chr1-140257908-4	chr1	140257402	140258402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	11645.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	3.61158578252394	3.92754906980583	3.66004746777874	3.43635850903916	3.47137277347052	3.78092178477412	-0.622275970769621	0.28256267292987	0.680451612659422
Merged-chr17-73927584-2	chr17	73927084	73928084	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	22612.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.87328366601411	7.03131474187773	6.61140716571701	6.75723924085507	6.71564727714824	6.38751608954846	-0.343143743242654	0.221140379242915	0.615632797217854
Merged-chr2-94405051-4	chr2	94404558	94405558	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	1631.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	5.67870514381055	5.40952085331538	4.88724165540023	5.46260836143746	5.54242533908181	5.22758615355541	0.0859065340380562	0.830610350176988	0.960362199059651
Merged-chr17-6746190-4	chr17	6745701	6746701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	36579.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.24785635679325	6.90448168629615	6.44036623479469	6.59934692809491	6.51454110530412	6.55714353948631	-0.565743929646247	0.0644167752513938	0.330863644143085
Merged-chr8-108317702-4	chr8	108317214	108318214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	266963.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	5.62375592131128	5.64881381578598	5.44311287104165	5.18294789335628	5.59732150754735	5.67364569270938	-0.151436722210022	0.664903112366137	0.907721942545399
Merged-chr7-142893988-2	chr7	142893488	142894488	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009377, intron 12 of 12)	intron (NM_009377, intron 12 of 12)	5978.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	1.99410773906314	1.99234523135828	2.12245619440794	1.8570813661151	1.76317081002015	1.86159740455733	-1.93911781626373	0.0608388919971199	1
Merged-chr8-9977759-4	chr8	9977261	9978261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	44.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	7.14572735438952	6.61383730916783	6.85995741832402	7.33631899878481	6.94311793723209	6.66110102422156	0.187318117317216	0.543100677480734	0.857486639982385
Merged-chr4-103120477-4	chr4	103119913	103120913	+	908.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	1023.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	7.20352283867816	7.76580052564369	7.6988126386682	7.77258132697542	8.13254909890407	7.65567107873003	0.427997265472964	0.121799752314038	0.466849055144701
Merged-chr6-116006457-2	chr6	116005957	116006957	+	765.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-11452.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.43321707805559	4.32313835528772	4.29767562039508	4.19028447081646	3.77284891446468	4.23137703584881	-0.791123657612338	0.111906809413226	0.446815084509229
Merged-chr18-49553851-3	chr18	49553355	49554355	+	753.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30566.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	3.32883150524625	3.3443094336272	3.38209716771075	3.07940422169423	3.24627100055906	3.34355601723185	-0.509738335866703	0.412105934505941	0.784314318706468
Merged-chr9-71140330-4	chr9	71139858	71140858	+	837.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	22275.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	4.7414589545624	4.19543740854785	4.10046682827465	4.84496270229145	4.86676486839483	4.77014431796459	1.04588149085174	0.0301029496097183	0.209475357108058
Merged-chr17-57279129-4	chr17	57278628	57279628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011691)	promoter-TSS (NM_011691)	28.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.24383208585484	6.96661402439801	7.33279987596629	7.46804220283702	7.50981045485553	7.11538324842899	0.296076854736223	0.254739371432545	0.651754308411513
Merged-chr8-19707373-5	chr8	19706838	19707838	+	901.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22238.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	3.69337970560126	3.6407437200471	3.53653388702784	3.23024691350585	3.49333462822809	3.32218655648854	-0.991563405522447	0.101868841490906	0.425769307464577
Merged-chr7-141265031-4	chr7	141264615	141265615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252600, exon 4 of 9)	exon (NM_001252600, exon 4 of 9)	1309.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	5.92119773416133	5.9335923556934	5.71266700165192	6.18793205616194	6.33754766958855	6.34480038393629	0.722183515567692	0.0134581662339371	0.123491460655759
Merged-chr11-83734337-2	chr11	83733837	83734837	+	765.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12603.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	4.28417725269266	3.91199498993546	4.01018872886995	3.80621866685099	4.12236255019365	4.2180186318401	-0.0659512029472799	0.898931185799443	0.976432549466174
Merged-chr11-86717675-3	chr11	86717175	86718175	+	802.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 14 of 31)	intron (NM_001003908, intron 14 of 31)	33594.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	5.87003492162533	5.57690448671632	5.77149233844538	5.78413873023941	5.87785936900679	5.90653113107909	0.202708455818013	0.514846958813642	0.84327839508997
Merged-chr14-12284786-4	chr14	12284257	12285257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284384, intron 1 of 4)	intron (NM_001284384, intron 1 of 4)	554.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	6.8661349632592	7.33592137402716	7.167186775959	7.38616314021148	7.34606480192664	7.02985928509578	0.196185919412481	0.465405882642519	0.816993516517273
Merged-chr3-15861490-1	chr3	15860990	15861990	+	640.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-13003.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	3.36881949558713	3.36527902394391	3.58801532425146	3.31526310639966	3.38499071020294	3.50370902140002	-0.146021441645802	0.805727933183836	0.953956034266138
Merged-chr7-132620762-3	chr7	132620300	132621300	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	10157.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	6.21484941751285	6.4291129710554	6.32963375160137	6.5463642612375	6.28698026390288	6.29023038942846	0.0863956277634148	0.758249672274157	0.940104678746179
Merged-chr11-94381526-2	chr11	94381020	94382020	+	647.0	f0_balb.idr|f1_balb.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11456.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.96280640147126	5.76871371153525	6.16214249099752	5.79066697308806	6.02093864608227	5.84303665941083	-0.121653520249754	0.698100585803029	0.920194115035571
Merged-chr15-57929572-4	chr15	57929041	57930041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	17342.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.43128776921488	6.30340143282258	5.91279933254185	6.32699834767943	6.49226058572463	6.12213033413429	0.141559569598188	0.648189333997426	0.901717305258003
Merged-chr8-117267615-4	chr8	117267099	117268099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	10580.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.17439591601805	6.98731855682284	7.06989435090457	6.69970331843169	7.05960229122149	6.92628049431212	-0.261125081325145	0.308916177712773	0.70476767553933
Merged-chr14-101515259-2	chr14	101514759	101515759	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	B4A|SINE|B4	93932.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	2.89877413000479	2.8510452613677	2.99073384661267	2.89129894166325	2.84503360945167	2.75816185531114	-0.381700568467129	0.587235690127058	0.875769926947203
Merged-chr7-139298685-3	chr7	139298177	139299177	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50195.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	2.79994917013605	2.65897936796229	2.88821026168122	2.69718882646218	2.51879900050917	2.90245533368748	-0.387971076707019	0.611756152217348	0.886317835243437
Merged-chr5-139285540-4	chr5	139285026	139286026	+	956.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32029.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	6.77692553043555	6.82173316775587	7.37655415945148	6.73234798698433	6.9827294210816	7.08122943302295	-0.113044195916742	0.700244311883714	0.920919335036368
Merged-chr7-97085439-2	chr7	97084939	97085939	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	3688.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.17899015395645	4.42383488139987	4.17315502617909	4.27615686685066	4.24737698113856	4.46247515302933	0.146763847714016	0.75111555516455	0.937718261890661
Merged-chr1-92652155-3	chr1	92651688	92652688	+	805.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3347.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	2.73680749234438	2.48555531590903	2.60897224098613	2.43631713921022	2.22066040687905	2.42528041945963	-1.65936213401491	0.056121940312571	1
Merged-chr13-55447861-4	chr13	55447367	55448367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	2536.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	4.78663764917528	4.86953030839832	4.96604690807477	5.05259813382407	5.5666910741477	5.26747177912955	0.945509618331804	0.0141445377953457	0.127692166743531
Merged-chr10-81349332-2	chr10	81348832	81349832	+	935.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 3 of 9)	intron (NM_001163165, intron 3 of 9)	1094.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	3.15284488021958	3.1350227802396	3.63788100889699	3.42160784868024	3.20472878944409	3.2331362742491	-0.126071845925505	0.848205580530145	0.964318271116593
Merged-chr4-20042079-4	chr4	20041573	20042573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	21.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	4.39816655868451	4.20819615563018	4.76438466425825	4.54422180833574	4.52154187029492	3.99643837805626	-0.215301270815737	0.674258624473034	0.911841916826811
Merged-chr13-75843353-2	chr13	75842853	75843853	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	L2|LINE|L2	3467.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.91417014727141	2.71127485210816	2.76349562384653	2.90697398443625	2.97599179431365	3.07881131468859	0.910911623872566	0.200165021547421	0.589047961553239
Merged-chr14-30655652-4	chr14	30655122	30656122	+	837.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 1 of 12)	PB1D10|SINE|Alu	1247.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	4.33595289204486	4.21033638063077	4.5791790626992	4.17192918392157	4.39570309824048	4.31765511867624	-0.190894715767386	0.680218333524059	0.914178447009397
Merged-chr2-43795019-4	chr2	43794526	43795526	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	46202.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.80335795835665	5.87636802444119	5.80328989326325	5.8134879026532	5.94779040527468	5.93786888276808	0.12740700829254	0.669411989579336	0.909647137220042
Merged-chr2-153135725-2	chr2	153135225	153136225	+	634.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 8 of 12)	RSINE1|SINE|B4	-25576.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	2.77752561476184	2.73752142787046	3.32429851626707	2.80381569905897	2.78356233468228	3.24210820975851	-0.0625680475935821	0.935943957844845	0.986014061025137
Merged-chr5-92098893-3	chr5	92098390	92099390	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15146.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	6.0759730130242	6.00232154564105	6.0597284846881	6.19012274356408	6.23252355300292	6.09820390488182	0.229424911699489	0.415896139689018	0.786766117298325
Merged-chr2-39011922-2	chr2	39011422	39012422	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	B1_Mm|SINE|Alu	3783.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	4.76339428391384	4.71542113036936	4.94469220883711	4.69529659815947	4.94188341802906	4.44710656452232	-0.180771198008165	0.67222763468557	0.910756996322765
Merged-chr6-145767186-3	chr6	145766707	145767707	+	945.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41176.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.18507759110521	4.28457122080792	4.05696013975971	4.10415803914171	4.19298639261425	3.92069847362062	-0.278799196615653	0.568489175505824	0.868598429274735
Merged-chr2-102974244-4	chr2	102973725	102974725	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72560.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.77359268099949	5.73338938414499	5.78220463550706	5.80278926492878	5.5544971206532	5.96168663409817	0.0158859889380953	0.960335178314472	0.990380695859216
Merged-chr12-80922131-4	chr12	80921635	80922635	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	2312.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	3.38762850623454	3.35899954881253	3.69606662351848	3.48974786367643	3.26303407133274	3.76457640697538	0.111280364931682	0.857389509206523	0.966747388099837
Merged-chr4-101168489-2	chr4	101167989	101168989	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	96793.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	2.99559533982259	2.75299512184253	3.34227253330884	2.67615939456637	2.73439052873378	2.98570541088962	-1.18140414828106	0.124651031371097	0.472306664538883
Merged-chr8-116975223-4	chr8	116974742	116975742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	3411.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	6.4671166526514	6.55700205838912	6.62496965972247	6.32518977450405	6.61380607379603	6.28220978006868	-0.194171690447512	0.484567038462458	0.826955188719244
Merged-chr7-16739708-3	chr7	16739206	16740206	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	1262.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	3.79898455761266	3.47802690462697	4.09329900656301	3.92158018594512	3.7329003437427	4.07303463560554	0.3268738986033	0.567685055510157	0.868243844182213
Merged-chr17-35169320-2	chr17	35168820	35169820	+	964.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4443.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	4.73279147522044	4.34915517597095	4.65556719478464	4.79079426166961	4.73427255589865	4.90770379655409	0.518641074444515	0.217439568660151	0.611302214044458
Merged-chr8-108729225-2	chr8	108728725	108729725	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	14581.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.81392425934588	2.6425530903336	2.95810494273306	2.71285863423339	2.65456030590492	2.79545737703312	-0.457538029712058	0.536289970320802	0.85392789486322
Merged-chr18-36286306-6	chr18	36285816	36286816	+	858.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5154.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	6.33138455907402	6.45721532532974	6.14676549558891	6.61840144445658	6.51979142509637	6.37567032417106	0.301249693692612	0.279545546107064	0.677243536080196
Merged-chr10-13439367-2	chr10	13438867	13439867	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	L1MC5|LINE|L1	35029.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	3.09140363402393	2.95295809026219	3.17425068032379	2.82043338832934	2.63789360994532	2.70526454414381	-1.8386369197404	0.0145486579753382	0.129916798971017
Merged-chr15-102073753-4	chr15	102073238	102074238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-35.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	6.81935278590728	7.01049233989383	6.82696003304239	6.99781281131092	7.05124128159175	6.79313590854134	0.103509032236454	0.682275912584628	0.915044974923355
Merged-chr18-69575487-4	chr18	69574965	69575965	+	950.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	229305.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.86910749765576	5.80968874158874	5.41118604285229	5.45523072502142	5.48193875503623	4.77876675841363	-0.808466805776016	0.0491615687094557	0.281763039618156
Merged-chr13-55020310-4	chr13	55019820	55020820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	499.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	7.8951331395187	7.67539385035619	7.55536203205442	8.12073845840393	8.21166343117349	7.58142565802398	0.411600078039032	0.122284300942108	0.467753050742009
Merged-chr6-129388368-4	chr6	129387853	129388853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2479.0	NM_001204223	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	5.91762836154814	5.9237248956309	5.73305254044384	5.81992367424127	5.72665283675932	5.50775332199814	-0.302927737231548	0.337194168370704	0.727135550764255
Merged-chr1-120121191-4	chr1	120120721	120121721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	34.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	6.49248643187523	7.0302274455375	6.86145092523732	6.84814217643097	6.95897654114646	6.93387603162133	0.15414570682341	0.577334749731415	0.872117086580778
Merged-chr15-77359676-3	chr15	77359168	77360168	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39442.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	2.2829979693655	2.11565268552093	2.35185442391575	2.13800314684833	2.16971909732507	2.09691844851696	-0.817855690388623	0.362255888382192	1
Merged-chr7-19283183-3	chr7	19282732	19283732	+	900.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013648, intron 1 of 9)	intron (NM_013648, intron 1 of 9)	608.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	2.6016455751681	2.74916889024979	2.60689420264127	2.79980490888622	2.61171565566658	2.86758959667993	0.548472945545293	0.467365891099723	1
Merged-chr2-11548743-4	chr2	11548237	11549237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	5192.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	5.35045728283417	5.31605474211673	4.74717470575369	5.09705225240572	5.0159806132883	5.22687893257243	-0.144083114296565	0.718468361903953	0.927364481477278
Merged-chr3-144204052-2	chr3	144203552	144204552	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	1203.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.78297203632328	4.88303934518045	4.71306134923659	5.05531460646128	4.90385305417378	5.20487691624376	0.549266384411303	0.15675457852294	0.527613063058663
Merged-chr2-181242041-4	chr2	181241537	181242537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183162)	promoter-TSS (NM_183162)	-10.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	7.91447119098997	7.85242162316361	7.75593363358021	8.20604144591835	8.28661273445296	7.92982172693397	0.440849552841925	0.0503355466150747	0.285482936592402
Merged-chr2-120111050-4	chr2	120110558	120111558	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	MIR|SINE|MIR	43517.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.03393086680744	5.16208875853575	5.03267060984394	4.74664921048362	4.62773819833854	4.45301501721899	-1.03274395184593	0.0098628594779498	0.0994931465823859
Merged-chr17-33554385-2	chr17	33553885	33554885	+	657.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172619)	TTS (NM_172619)	-1322.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	3.44325179920293	3.54383105506197	3.75088588353512	3.5453743062561	3.46462432192706	3.67154139520748	-0.0746149495386535	0.896231205859941	0.975793383188212
Merged-chr1-120070265-2	chr1	120069765	120070765	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	3515.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.94084013144401	2.83083634492276	3.0259289445884	3.16107417863367	3.05445206452348	3.32248170108047	1.13153828874349	0.0946669548020224	0.410136490273995
Merged-chr7-116504269-4	chr7	116503770	116504770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130479)	promoter-TSS (NM_001130479)	-99.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.72559164499534	6.71837837697137	6.66147622321274	6.31737251792785	6.26247251434073	6.26585172199238	-0.682004207194099	0.00881371245867308	0.0922247719141436
Merged-chr12-86243497-2	chr12	86242997	86243997	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	1639.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	4.4381616719298	4.83472304277423	5.00802175867376	4.79648720700854	4.69533438864802	4.7147663870113	-0.086933964045843	0.839044703821145	0.962689865219038
Merged-chr11-116031221-4	chr11	116030702	116031702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	886.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	9.34070090058763	9.59227316785888	8.79232507186011	9.05938951928741	9.56156061409266	9.01768234588944	-0.0640208572476837	0.821737571530005	0.958023303204974
Merged-chr7-89236300-4	chr7	89235799	89236799	+	919.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	102488.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.88532689238603	6.15168307758572	5.67597707590336	5.64913818054793	5.71484064244087	5.50318645012187	-0.535677460892516	0.104035906768426	0.43012122281562
Merged-chr17-78679624-2	chr17	78679127	78680127	+	774.25	f0_balb.idr|f1_balb.idr	intron (NM_011500, intron 6 of 17)	Lx10|LINE|L1	56933.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.65291352183764	3.73712644054849	3.59118690565833	3.27072808985282	3.07895381373499	3.20375905886471	-1.96145989346776	0.00189859857708139	0.0296952237597346
Merged-chr4-144974651-1	chr4	144974151	144975151	+	549.0	f0_balb.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	81514.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.53438921878148	3.69028381250438	3.73730590284007	3.57883284379525	3.45058420714699	3.70636891610096	-0.275689244736808	0.623740200225389	0.891566739256228
Merged-chr17-15695771-4	chr17	15695268	15696268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9199.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	4.54355818465708	4.2059633556948	4.22174475454032	4.13759099849105	4.10455031974809	4.1482433994593	-0.57482240367838	0.225250822476955	0.620063864646258
Merged-chr11-50132607-2	chr11	50132107	50133107	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	intron (NM_029745, intron 1 of 20)	1247.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	3.51259971375642	3.37239425513085	3.38478964108882	3.73911593966137	3.56582842857721	3.4576502267669	0.614084528877331	0.291905742547619	0.689235268138963
Merged-chr11-6527913-2	chr11	6527413	6528413	+	790.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	intron (NR_045893, intron 2 of 3)	847.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	7.32843947736918	7.55950602195845	7.12246723612677	7.46658625149012	7.61053635522806	7.19323772468752	0.126661894918449	0.628598722034938	0.893783616313365
Merged-chr11-55155221-4	chr11	55154724	55155724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3518.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	6.13217657314137	6.56734113948846	6.72161373153936	6.34188675126475	6.43682204278557	6.54375034178368	-0.0804801662468941	0.788627082895522	0.94895503373255
Merged-chr13-30544581-1	chr13	30544081	30545081	+	630.0	f0_balb.idr	intron (NM_025710, intron 1 of 1)	intron (NM_025710, intron 1 of 1)	735.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	6.69537925466042	7.08208498466466	6.81276121154331	6.96607454734873	6.94458597122175	7.01288798728149	0.144806531321185	0.576472417385069	0.871585692229598
Merged-chr2-30447423-4	chr2	30446931	30447931	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138748, exon 10 of 10)	3' UTR (NM_138748, exon 10 of 10)	26768.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	5.45994613176674	5.47355554441623	5.60264134004137	5.28807935718378	5.31933364773669	5.61181121715813	-0.202516763936672	0.550212608683271	0.860631826326949
Merged-chr11-72940934-4	chr11	72940396	72941396	+	919.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20273.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	4.02405035325722	4.51673991214293	4.27710038239616	4.21252372238226	4.21721150371726	4.2077522943197	-0.215945383449641	0.65519224123843	0.904167065613807
Merged-chr1-105996274-4	chr1	105995803	105996803	+	831.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	5897.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	4.93505420760602	5.19905188874026	5.17606720189882	5.17476348084092	5.26722168285185	5.14030706712532	0.193476564602542	0.593721038304379	0.878591467713705
Merged-chr2-133494951-2	chr2	133494451	133495451	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57208.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.21113062854369	5.03511887240203	5.00572195687525	4.87552770370821	5.07241200779913	4.96198038841787	-0.242224892176913	0.517182259432779	0.844527100635531
Merged-chr13-101742863-4	chr13	101742369	101743369	+	938.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	25348.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.79898922760322	6.08452388664889	5.96172381975131	6.15076665751317	6.12145672576846	6.15605036516074	0.321055978146918	0.273658479247969	0.671005315380766
Merged-chr2-70793632-2	chr2	70793132	70794132	+	773.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 1 of 19)	ORR1D-int|LTR|ERVL-MaLR	31848.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	3.99815588439015	3.73056316955853	4.20977300777618	4.52692044749458	4.26253614975087	4.52856951265715	1.26770330682617	0.0113444519324418	0.109983406428601
Merged-chr17-30182934-4	chr17	30182441	30183441	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 4 of 5)	intron (NM_001356265, intron 4 of 5)	177902.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.16875013395158	4.1906237731947	4.00880701652236	4.30635296921023	4.1763036743121	4.35891048703089	0.40075443441833	0.39287611870591	0.771377884930667
Merged-chr2-3322434-2	chr2	3321934	3322934	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 10 of 13)	intron (NM_008708, intron 10 of 13)	10194.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	3.12708101058668	3.34416993332934	2.89297249064208	3.00557045853996	3.03781920089041	3.37959074781871	0.0371326637009804	0.958395736998876	0.990034569981835
Merged-chr2-167687704-6	chr2	167687176	167688176	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1239.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	4.76133688733516	4.71072814085153	5.35209088299424	4.46111504952291	4.18205203472805	4.81293710583083	-1.08300525989648	0.0250078494678955	0.187026167402899
Merged-chr15-93484431-2	chr15	93483931	93484931	+	986.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 6 of 6)	ID_B1|SINE|B4	85967.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	4.11964261019371	4.50330333252889	4.15948946577758	4.35162209437538	4.09624593523658	4.40688232319972	0.0106348439811808	0.982517505416681	0.996025201140234
Merged-chr3-81046700-3	chr3	81046200	81047200	+	975.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10284.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.46775972983191	6.77237638977292	6.64958878200276	6.2949177630978	6.61707371978803	6.20212623503729	-0.383907009330448	0.186865998321061	0.571649303125656
Merged-chr1-59465350-3	chr1	59464853	59465853	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16794.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	4.05348528813608	3.89295899108139	3.84287027344942	3.80100401743214	3.72155862981815	3.64348773342291	-0.674431537440648	0.201415366167009	0.590984054786189
Merged-chr10-98792543-4	chr10	98792031	98793031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122111.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.49587773797944	6.4824158067317	5.86966263454119	5.84843058920681	5.86690052207365	5.79834930966668	-0.832536751120465	0.0102983327824552	0.102500439493126
Merged-chr11-98809695-4	chr11	98809188	98810188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138660)	promoter-TSS (NM_138660)	-120.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	8.15104709665482	7.99536065436783	7.91620741843819	8.21185528497519	8.28054188315841	7.8994494277787	0.169676537792304	0.460903539785805	0.814802506471053
Merged-chr5-105616291-4	chr5	105615720	105616720	+	934.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-83749.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.8110673443852	6.41916032380299	6.06157590494601	6.39163381573494	6.44863077201971	6.44187396349645	-0.0856618380134204	0.785090087264067	0.947850129107983
Merged-chr11-109374320-2	chr11	109373820	109374820	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	B1_Mur4|SINE|Alu	-10666.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	3.01792334049439	2.97370911864607	3.27972313202811	3.48341975553632	3.19657040257423	2.99118834665341	0.634211927673271	0.356560394871303	0.743348418397567
Merged-chr19-17342493-2	chr19	17341994	17342994	+	596.0	f0_balb.idr|f0_c57.idr	intron (NM_010265, intron 1 of 2)	MIRb|SINE|MIR	-2989.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.86842840493494	3.69474310711536	3.69016228798872	4.12265052224518	3.79627274241605	4.32649293825134	1.01912138087127	0.0611837056972986	0.320792298907424
Merged-chr15-101266802-4	chr15	101266276	101267276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-70.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	7.69498840522099	7.55812770418869	7.53697430925796	7.62876533791405	7.65782692189086	7.1996407906816	-0.114211436600248	0.6455085907163	0.900579782638149
Merged-chr14-70867995-3	chr14	70867507	70868507	+	913.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	Lx|LINE|L1	15074.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.25933813532652	3.27878348037898	3.43914196350186	3.17214089771369	3.18294880528776	3.05322867595569	-0.761742847256906	0.232641831480889	0.628944749946774
Merged-chr6-55037853-6	chr6	55037255	55038255	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180678)	promoter-TSS (NM_180678)	-246.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	6.82056015470156	7.15294670308873	7.24033246868062	7.15837954134658	7.07950579954315	6.97226836499334	-0.00548997071137118	0.983046822336296	0.996204557270927
Merged-chr12-32767052-4	chr12	32766550	32767550	+	920.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53285.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.07294100774278	3.95120775966056	3.93364314512795	3.84041888889534	3.64940020955122	3.85268671619445	-0.670522973308053	0.194836947071017	0.582478818292114
Merged-chr11-116845092-1	chr11	116844592	116845592	+	925.0	f1_c57bl6.idr	intron (NM_028865, intron 1 of 4)	B1_Mm|SINE|Alu	1577.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	3.32362389106109	3.38751526505597	3.79734724317941	3.36605298209947	3.20487258929766	3.90926473060324	0.0332630429366596	0.960172463397327	0.990335445597503
Merged-chr4-83274371-4	chr4	83273876	83274876	+	920.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49813.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.16503426864337	6.17461202412816	6.23443050032323	5.89110383203442	5.89294252874078	5.89883789796824	-0.509421478577834	0.0742443588262416	0.358378269475224
Merged-chr6-113748900-2	chr6	113748400	113749400	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8219.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.27217894888219	6.14207851409493	6.32609174776946	6.86874915449522	6.97970754922895	6.59082501607115	0.944196490016197	0.000564511747321953	0.0115466798110042
Merged-chr5-92368269-8	chr5	92367736	92368736	+	928.8035890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	MTD|LTR|ERVL-MaLR	-4940.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	4.61701931459779	4.29338065574046	4.56540610598758	4.75418926759503	4.57574980701849	4.50591210952683	0.298456701139253	0.492156386776692	0.830934592569652
Merged-chr17-5807993-4	chr17	5807488	5808488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8498.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.71535163298191	5.55135247163597	5.81294907155155	5.47625780622107	5.77914880843875	5.46920046448323	-0.177613007765773	0.594573223693829	0.879143746746643
Merged-chr14-78725420-3	chr14	78724985	78725985	+	932.609558	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	intron (NM_001081336, intron 1 of 29)	7244.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	2.32197717836331	2.30816105334034	2.3586990893394	1.96483031681897	1.90033087359842	2.30611413248768	-1.77353526078759	0.318894795115118	1
Merged-chr1-171287531-2	chr1	171287031	171288031	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 1 of 12)	intron (NM_013919, intron 1 of 12)	430.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	5.50269043417326	5.51731419901254	5.81088673152219	5.49062947602989	5.39421132707464	5.77705645793544	-0.105451743447168	0.757580035423245	0.939883186830738
Merged-chr9-118868025-4	chr9	118867520	118868520	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-58516.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	6.38355202343702	6.28207972304648	6.03240118092363	6.04465335707688	5.87952022693187	5.67629435280288	-0.628421120119459	0.0415598805023288	0.254985587438267
Merged-chr10-80433686-4	chr10	80433203	80434203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-50.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	6.59091672427346	6.37032647422637	6.39954694430359	6.94294682915279	6.45198557937391	6.62087391683119	0.362400547593338	0.208717349407799	0.599729028576702
Merged-chr4-134917209-4	chr4	134916709	134917709	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2293.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	5.24269430559047	4.94598679864422	5.69363485002418	5.4164139557058	5.38105939091395	5.41195170459376	0.167931510253238	0.664670625007924	0.907719555092983
Merged-chr2-167805932-7	chr2	167805425	167806425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114748.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.98899054457858	7.9637912351785	7.93021561599006	7.81092095172531	8.21471005013235	7.78085922805107	-0.0024404619800607	0.991803660358798	0.998351393644539
Merged-chr15-38650989-4	chr15	38650495	38651495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10909.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	5.82612817553466	5.75794420933034	5.76220133374784	5.6044132781342	5.44505419057012	5.36639411630094	-0.565515716487323	0.0769248902957431	0.3654980698605
Merged-chr8-80916669-3	chr8	80916154	80917154	+	998.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-36135.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	4.04730741064058	4.02507260919438	4.13005453983241	3.70178517632469	3.6613835749953	3.86875520951073	-1.03077516582873	0.045490198919847	0.26930436162134
Merged-chr6-86583075-2	chr6	86582575	86583575	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45099.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	4.08668462518669	3.91343780217038	4.13985715917198	3.87267168326983	3.99198057217085	4.63765507241904	0.435531821744195	0.423897399312648	0.792272050905538
Merged-chr8-79447508-4	chr8	79446991	79447991	+	976.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48023.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.89893813568105	5.05582504380219	5.11522854253408	5.02969083082569	4.93786390302266	5.2101657680866	0.069860975391981	0.851988563718821	0.96531854415899
Merged-chr3-90082578-2	chr3	90082078	90083078	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	3057.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	6.12277018412475	6.19368529454123	6.50289239780741	6.5790270081426	6.85146037975538	6.50965362151632	0.63399653337852	0.0277302214761543	0.198808915094593
Merged-chr18-36281042-4	chr18	36280537	36281537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008989)	promoter-TSS (NM_008989)	-125.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	9.17915427016762	9.30517854111996	8.84690773655566	9.03679094468547	8.81724341520001	8.86676553429007	-0.298985222960847	0.180213351811281	0.561900868076458
Merged-chr7-3289265-4	chr7	3288769	3289769	+	920.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001093764, exon 1 of 3)	5' UTR (NM_001093764, exon 1 of 3)	231.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	3.49459961899582	3.96095290278651	3.78892966307655	3.84818021642216	3.97200589878769	4.31235183573688	0.877616015636474	0.120381613613755	0.463973009661092
Merged-chr13-33965268-3	chr13	33964777	33965777	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163239, intron 1 of 5)	intron (NM_001163239, intron 1 of 5)	618.0	NM_001163241	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	5.66422875046641	5.74675032639828	5.91561418968939	6.02072876354799	6.07480057694232	5.95329094185265	0.442320161391906	0.140340971428824	0.500699117062725
Merged-chr4-119980067-4	chr4	119979496	119980496	+	946.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	165318.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.958767914671	4.5452245161633	5.36592898246775	4.60193436591569	4.92201936931255	5.37431809392444	0.0128255863015974	0.978617302630727	0.995160277495735
Merged-chr14-61556904-4	chr14	61556413	61557413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-27.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	6.38116652028749	6.43955017157551	6.39810613923021	6.1387093475916	6.17805731762303	5.72180134656552	-0.605972671764078	0.0435920947215248	0.262366077221601
Merged-chr10-94378483-4	chr10	94377973	94378973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	66524.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.69392048977105	6.53063286373838	6.1618225533059	6.40376251483607	6.22062904399521	6.03504314280211	-0.422255047943284	0.166871076125222	0.54240433228749
Merged-chr2-32965697-3	chr2	32965203	32966203	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	2402.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	5.77037507037293	5.68738649903422	5.71837537413418	5.79032584371357	5.79596391183951	5.06396409353064	-0.21426225430138	0.567328660380396	0.867922102830153
Merged-chr19-12815391-4	chr19	12814831	12815831	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	16752.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	4.75785277745503	4.99327449246902	4.82312452001611	4.79857234394738	4.57968574427744	5.09504584511581	-0.0830370834183639	0.841735784607627	0.962988975342446
Merged-chr4-11022982-4	chr4	11022486	11023486	+	965.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15367.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.47952902710602	3.84174908245277	4.0713475009368	3.6362671250811	3.978798289638	4.26358612897578	0.50005830360092	0.399646054668719	0.775995820989774
Merged-chr7-13010626-2	chr7	13010126	13011126	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-774.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	4.27014452972773	4.29959882842363	4.60656530265477	4.36677252718795	4.66175523250391	4.74608598608667	0.522037404653264	0.245318875423491	0.642393755173178
Merged-chr19-3916180-2	chr19	3915680	3916680	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 8 of 9)	intron (NM_026316, intron 8 of 9)	-3406.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	3.59410635668575	3.47655918781838	3.7031765830254	3.78772725262344	3.66159322908542	4.0108926910654	0.775454229307113	0.162216769192952	0.535591771804088
Merged-chr18-4313447-1	chr18	4312947	4313947	+	611.0	f0_c57.idr	Intergenic	Intergenic	39506.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.93436314296291	8.26886644856932	7.99947552837285	7.75250440061765	8.00904878542038	7.50879228486665	-0.421181494732587	0.0945744955095254	0.409952075987455
Merged-chr5-125271712-4	chr5	125271219	125272219	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69375.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.74642114556572	2.26870431874314	2.52682231773315	2.24380056636869	2.05280748718826	2.47468419425174	-1.74138478644544	0.0820612301140432	1
Merged-chr10-40832391-4	chr10	40831880	40832880	+	955.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027879, exon 15 of 15)	3' UTR (NM_027879, exon 15 of 15)	50763.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	4.77262233353692	4.73725179813323	4.18049482971757	5.14963244144526	4.97204322466204	4.41527307730476	0.655219762432892	0.193583942586036	0.580793707892799
Merged-chr11-103306572-3	chr11	103306067	103307067	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38135.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.52124498781833	4.56818294500673	4.41787487409297	4.01719371831059	4.02297444044045	4.40029155875532	-0.969094413193481	0.0388044632537324	0.244276121835116
Merged-chr18-36465217-4	chr18	36464700	36465700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-10705.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	5.18198132353359	4.9074307996595	4.63686231449501	5.33219582970406	5.03051902225448	4.56622837101101	0.182523600740866	0.688228352360322	0.917193226920892
Merged-chr14-30479556-4	chr14	30479073	30480073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133761)	promoter-TSS (NM_133761)	8.0	NM_133761	75901.0	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	6.12270886812932	6.40500017900616	6.54290021163703	6.61746491554424	6.53061977058257	5.90746105556586	0.0596206281386693	0.856863545429106	0.966628636076984
Merged-chr4-139616276-3	chr4	139615719	139616719	+	700.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 8 of 8)	intron (NM_001205173, intron 8 of 8)	-6675.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	6.39513183208686	6.53470600664884	7.06569316079509	6.84558799652889	7.22443061336753	7.17098565718592	0.622724792859759	0.0399520590723896	0.248808542122251
Merged-chr3-105770991-2	chr3	105770491	105771491	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	30390.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	3.7505002632506	4.09162481636198	3.79870274604656	4.10368111683536	4.07393854830098	4.07260954713695	0.555813132880267	0.278789889929738	0.676190705421913
Merged-chr18-35552120-2	chr18	35551620	35552620	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	2.12720099292455	2.25682374473502	2.33512641182624	2.01354891253948	2.15306551398064	2.15055724279304	-0.964633158675072	0.290067359859368	1
Merged-chr19-28964403-2	chr19	28963923	28964923	+	772.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_198651)	promoter-TSS (NM_198651)	-269.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	5.48437597947424	5.15713137804884	5.71160535262515	5.59759743546359	5.20469317765451	5.42469186844183	-0.0887206466004161	0.811691071920393	0.955306167164346
Merged-chr2-19371967-4	chr2	19371412	19372412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029619, intron 1 of 4)	CpG	276.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	6.62443476059596	7.03384671158071	6.16466505692708	6.31434215038181	6.34815142762838	6.22606440930093	-0.595943346540068	0.0680222897589278	0.341313314011992
Merged-chr3-130058647-4	chr3	130058169	130059169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	2238.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	5.03496435472704	4.97345419921156	4.87203772669222	4.92925850550142	4.87199927284998	5.24101363146076	0.0983162056252704	0.798619352444058	0.952041133514308
Merged-chr9-20889402-4	chr9	20888912	20889912	+	877.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 3 of 11)	exon (NM_145610, exon 3 of 11)	1237.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	4.83347593406539	4.79057207272473	4.95193962400763	5.37808342574988	5.21503077975143	5.19010343808064	0.871262926227709	0.0173962458147384	0.147235089081865
Merged-chr5-101972830-4	chr5	101972332	101973332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	B2_Mm2|SINE|B2	97089.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.15889923636741	5.05184894698327	5.03748843464717	5.27357728818028	5.0728851645071	5.26824939090228	0.239015138566359	0.507088737703197	0.838829594648539
Merged-chr11-69430113-2	chr11	69429613	69430613	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 76 of 85)	B2_Mm2|SINE|B2	-16438.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.68071235124343	4.65931230977059	4.76105042341802	4.94388657912221	4.82867596644201	4.93724207972763	0.463549549743082	0.23323198970637	0.629682827928185
Merged-chr11-106762681-1	chr11	106762181	106763181	+	618.0	f0_balb.idr	intron (NR_073165, intron 6 of 9)	intron (NR_073165, intron 6 of 9)	11455.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	4.55476442228783	4.29399476162512	4.59293905580751	4.25198535765051	4.15231181809976	4.62029590829672	-0.355273548507789	0.44855440663674	0.807277523678988
Merged-chr4-83282548-2	chr4	83282043	83283043	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	41646.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	2.66970560195176	2.91230843777207	2.77038439188925	2.70058539698519	2.58701567417614	2.8434212834272	-0.426307468076067	0.569251852350944	0.8688875602138
Merged-chr7-25711059-6	chr7	25710597	25711597	+	734.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028771)	TTS (NM_028771)	7956.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.78889949852294	6.11116186603792	6.27983912959779	5.84561170082365	5.58319533196565	6.01961584987595	-0.44175500024106	0.183564524409712	0.566825684946619
Merged-chr3-144721224-2	chr3	144720724	144721724	+	871.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-889.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.41148554882959	4.18757807193808	4.51578963946671	4.27760286474167	4.40139461473421	3.98196798621685	-0.342651042731696	0.481442244405228	0.825079730294173
Merged-chr12-11267595-2	chr12	11267095	11268095	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 1 of 9)	intron (NM_001361252, intron 1 of 9)	1709.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	3.08175018461597	2.91781894431941	3.03385183046123	2.88803985561241	2.75133540961514	2.86573802344897	-0.883071949046283	0.207357380531073	0.598124311908915
Merged-chr2-5698838-1	chr2	5698338	5699338	+	815.0	f0_balb.idr	intron (NM_001290374, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	15924.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.24381643981554	5.09184383272049	5.37268099936808	5.0062576833139	5.08860288240331	5.56964394482808	-0.00383254817181271	0.9920673222947	0.998383635246733
Merged-chr12-4593749-4	chr12	4593255	4594255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	747.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	8.18697148952253	8.39529530421396	7.88525378299072	8.16211095862024	8.3039382797751	7.84807077393422	-0.0760110067253432	0.765212982169587	0.942137701159565
Merged-chr6-124688519-4	chr6	124687951	124688951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	23727.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	6.38419887041452	6.19268728497056	5.94923268253701	5.93448194598783	5.95004256590506	6.01073368682685	-0.402162457534317	0.180600904509895	0.562557013357639
Merged-chr4-74251844-4	chr4	74251344	74252344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144787)	promoter-TSS (NM_144787)	-35.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	7.78113878684387	8.21541983584307	7.73963814737633	7.77451359999535	7.79961331986489	7.35728576812248	-0.38637818623356	0.147474181042674	0.512339011156061
Merged-chr2-59160193-4	chr2	59159670	59160670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	513.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	6.59845773132443	6.42129516895206	6.2817158352444	6.48801930440868	6.87412673099686	6.16607208565778	0.181218364505517	0.566278372240258	0.867280749726972
Merged-chr19-9977137-2	chr19	9976637	9977637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3463.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.18440658704807	5.23199743675975	5.01318596188085	5.34261034001644	5.52026668804166	4.70287376406922	0.199137947256113	0.636437689529761	0.897158055063138
Merged-chr13-113597261-2	chr13	113596761	113597761	+	891.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	21303.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.17018221338038	4.6323288690752	5.07039514090588	5.13866798128587	5.26334447770004	5.2010560129618	0.478797405607967	0.225680605894636	0.620676402041606
Merged-chr2-121355390-4	chr2	121354841	121355841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2435.0	NM_001355069	12716.0	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|U-MtCK|UbCKmit|mi-CK|mia-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	5.05693985753305	4.48043348747374	4.9469451958498	4.79859707086839	4.31415300913101	4.90810089709127	-0.363895637430315	0.437438449480756	0.799946781486006
Merged-chr1-82801726-2	chr1	82801226	82802226	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33270.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	2.58902940194524	2.58663153435421	2.72667490035911	2.749317013488	2.54073673657869	2.97504262303852	0.685189614653747	0.373751002879826	0.757546812967132
Merged-chr11-100927547-3	chr11	100927059	100928059	+	884.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	11981.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	4.54670058385174	4.41813120788837	4.76715477482733	4.65130071452406	4.67256826123484	4.72036754818033	0.254074679848949	0.543038568624794	0.857468369859798
Merged-chr4-152153973-4	chr4	152153474	152154474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1767.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	5.49138965569948	5.46509708333977	5.37226814408862	5.36055804639318	5.23534614097613	5.43548366267234	-0.214443313139084	0.52361652715186	0.848340745185793
Merged-chr6-128798420-4	chr6	128797921	128798921	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9780.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	4.24525496473823	4.1823682558019	4.34662667076192	4.16621333642297	4.23608126231528	4.14361382372795	-0.188323750044431	0.68286139463022	0.91523316791368
Merged-chr19-3860164-2	chr19	3859664	3860664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	B4A|SINE|B4	8391.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	2.57874302389637	2.87307918430357	2.95758897742237	2.85655637557369	2.73131366983403	2.97201287572022	0.213932120169851	0.774739631924158	0.944493464665915
Merged-chr4-129741394-4	chr4	129740907	129741907	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011317, intron 1 of 8)	CpG	896.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	7.26559716432954	7.10223415710449	7.20741816694544	7.55152455473591	7.73064720959591	7.36951504801805	0.552579784390636	0.0216455252429277	0.17021375617691
Merged-chr6-127351870-4	chr6	127351379	127352379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-43912.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	3.55933846732824	3.19406700202946	3.36256187669076	3.2488748473365	3.42388883115094	3.19985733717843	-0.318411989628005	0.617118484843835	0.888717787419226
Merged-chr7-81290246-1	chr7	81289746	81290746	+	550.0	f1_c57bl6.idr	intron (NM_008803, intron 3 of 21)	intron (NM_008803, intron 3 of 21)	54988.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	4.84837318533882	4.84603300434102	5.07210940134304	5.16975522554273	4.98038522827587	4.54687758895766	0.0319742536340865	0.939140732766194	0.986604659958455
Merged-chr2-163764568-3	chr2	163764082	163765082	+	999.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14343.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	7.32887767392052	7.59031034311798	7.31595458733685	4.98098777622755	4.9302746739149	4.90359977419455	-4.49662124653595	3.31353757364092e-35	6.89282086068785e-31
Merged-chr5-92374883-4	chr5	92374378	92375378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11582.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	7.21973514219965	7.0331506830019	7.06276103864718	7.32335968243075	7.43743261274611	7.19670026505413	0.329276712393945	0.169948130920445	0.547190499463234
Merged-chr6-131272515-4	chr6	131272010	131273010	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20734.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	5.64731878100215	5.79186578464014	5.69068321281103	5.73317686519404	5.60414254951895	5.64478674553851	-0.0976382260443332	0.754595703948633	0.939008487312488
Merged-chr7-19004116-4	chr7	19003641	19004641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	76.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.85810154306682	5.90330122426726	6.00799279936068	6.29797885762995	5.95818210923058	5.95239043470168	0.279525758991892	0.358150651658434	0.744578238636691
Merged-chr2-118543448-2	chr2	118542948	118543948	+	769.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	1139.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.42381225583617	2.28039639812006	2.41801541072447	2.48660735715921	2.51880056246326	2.79971889019537	1.41062277207095	0.0890774018031368	1
Merged-chr9-41161649-4	chr9	41161229	41162229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3667.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.68788143251785	6.66194114702483	6.70192026314416	7.06183912688158	7.13424986654601	7.26582032790455	0.722775107557902	0.00307020854167535	0.0428418434237335
Merged-chr17-83654736-4	chr17	83654205	83655205	+	887.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22810.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	3.85242089956503	3.57778128410312	3.88511776736058	3.63873568309365	3.84904635920138	4.09014784714114	0.29151934051503	0.597661180946963	0.880455475375358
Merged-chr6-114929632-2	chr6	114929132	114930132	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-7811.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.18215700222487	3.15474495837288	3.17448067619004	3.28058595583934	3.13581853756837	3.06645299127542	-0.0188328009744851	0.976464964769421	0.994723308989508
Merged-chr11-54002425-2	chr11	54001925	54002925	+	919.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019687, intron 3 of 9)	intron (NM_019687, intron 3 of 9)	-22092.0	NM_019723	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	3.20535074767141	2.96042580040346	2.89920385020042	3.11642209171541	2.98156658382946	3.15380734504082	0.221027496245906	0.746376941902084	0.936300236930265
Merged-chr17-67213852-4	chr17	67213363	67214363	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	140596.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.9412808303997	2.83463743142511	2.95377117739089	2.92322830015782	3.01083602730907	3.14010155397063	0.549724423716274	0.419306380499006	0.788930112802127
Merged-chr12-83689101-4	chr12	83688607	83689607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	544.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	8.34650953593419	8.60936032066059	8.12488564565543	8.39867412701527	8.78342159587155	8.15838235111828	0.141276587129729	0.595329684324284	0.879471010823782
Merged-chr10-8029041-4	chr10	8028552	8029552	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-72929.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.89985072294499	3.66704330065844	3.57197115336947	3.81810445821388	3.69254078699569	3.85674353989544	0.195630847703258	0.720532568108395	0.928214725379789
Merged-chr4-57027263-3	chr4	57026766	57027766	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-36875.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	3.92380179246852	4.08559986743169	3.9066000853741	3.34301639475934	3.34401562881675	3.3131738263459	-2.37293837286072	9.50179724720691e-05	0.00271692627266527
Merged-chr7-73524112-2	chr7	73523612	73524612	+	677.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17634.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.67687790392885	5.91305184112285	5.88090630072356	5.57723899101273	5.73243974376579	5.57817742278413	-0.342188150982658	0.280089931628968	0.67782692118149
Merged-chr5-127616938-2	chr5	127616438	127617438	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133895, exon 1 of 8)	exon (NM_133895, exon 1 of 8)	454.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	8.09523118332596	8.27351798879874	8.17755892913932	8.10707866386479	7.98089027307353	8.09888311044413	-0.174815853692297	0.405766452361851	0.780431209100942
Merged-chr11-19020548-4	chr11	19020055	19021055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1586.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.6085249292645	4.78157105060313	4.60470782179571	5.03803470583082	4.92043023443256	4.94620923883877	0.666980742649514	0.0895119855684757	0.397487100820884
Merged-chr18-61640794-4	chr18	61640296	61641296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	L3|LINE|CR1	1143.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	3.05402677294132	2.93981052773251	3.28953383988669	3.24698889127635	2.94825423995579	3.51439575732407	0.641474928758518	0.356750799447008	0.743448231367782
Merged-chr12-85112598-2	chr12	85112098	85113098	+	723.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 2 of 14)	B1F2|SINE|Alu	1765.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	3.9020949054649	3.92688606044913	3.65606936580502	4.00048698077322	3.56518126900117	3.67214415348059	-0.257940330734762	0.646360090070871	0.90099114147517
Merged-chr7-35054271-2	chr7	35053771	35054771	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	2295.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.10084193232377	6.16413703453164	5.57281345911747	5.98020697359491	6.39480714648673	5.99421973258503	0.276801854608711	0.419699090941857	0.789151514227059
Merged-chr7-44856726-4	chr7	44856201	44857201	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021549)	promoter-TSS (NM_021549)	-445.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	6.44548823410413	6.336837530276	6.79150163037071	6.83668720987435	6.99200278912573	7.07662152157617	0.694650277270622	0.0112844888566399	0.109525224400245
Merged-chr6-82715806-4	chr6	82715301	82716301	+	851.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58653.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.71424642828159	2.73878874384484	2.81992135867385	2.9237274865947	2.62869075711238	3.01064985499971	0.519254358689354	0.482179534809458	0.825427202167635
Merged-chr11-86753260-1	chr11	86752760	86753760	+	545.0	f0_balb.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	4307.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	6.02018211911215	5.88413654935412	5.90351309582399	6.01139179435529	6.28078022793432	5.72851027245781	0.181198143889663	0.570669005079395	0.869253690275099
Merged-chr3-109264711-1	chr3	109264211	109265211	+	823.0	f0_balb.idr	Intergenic	Intergenic	-75972.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.70304186412095	3.68960882712197	3.7390709285791	3.87249515577411	3.69797635542361	4.26386371467547	0.77703506321355	0.159326614024312	0.531416559094677
Merged-chr10-62504928-3	chr10	62504447	62505447	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	B1_Mur4|SINE|Alu	2810.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	6.35709476819059	6.31202215676769	6.21115166290616	6.21842125483081	6.25868130118554	6.48061257017049	0.0288110978739899	0.917531315450164	0.98166801957001
Merged-chr19-6873963-2	chr19	6873463	6874463	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15752.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	2.85270169958491	2.95258239619816	2.76440940616364	2.86551346779859	2.69580484001921	3.24382767488956	0.423032869585735	0.573211506214888	0.869962295500663
Merged-chr13-112130425-4	chr13	112129894	112130894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-158057.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.53476127669861	5.04642008936262	4.74136264521172	4.51979364322541	4.30049906102265	4.73109015453969	-0.662051803133197	0.142100226435236	0.503232645397833
Merged-chr15-97520641-1	chr15	97520141	97521141	+	843.0	f0_balb.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	185181.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.77710875220089	6.03557085168743	5.72595525266682	5.48471893952078	5.65988377995983	5.23473239609369	-0.684633144828989	0.0461265856346109	0.271627808739186
Merged-chr8-127780972-8	chr8	127780507	127781507	+	789.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	481355.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	2.93389324959907	2.81695566944584	3.48544568283843	3.2822874086803	3.13942809453987	3.60353713690905	0.981583588396845	0.186653545402658	0.571348871080751
Merged-chr8-46640018-4	chr8	46639514	46640514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009810)	TTS (NM_009810)	22723.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	5.90282683073684	6.06621825886307	6.00963958144848	5.92024800786239	6.03044022654469	6.07030294747721	0.0218456202683579	0.940346334167465	0.986824626031435
Merged-chr4-124803080-4	chr4	124802541	124803541	+	742.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	492.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	6.85027952487149	6.92009111538437	6.71144382723149	6.89987105968161	7.2004714884655	6.81815225129398	0.243687750108298	0.354713045621528	0.741848255752265
Merged-chr17-70986574-2	chr17	70986074	70987074	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3942.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.86938976437408	5.51971222673497	5.61374830794721	5.59165840723301	5.67015636277527	5.56311921395702	-0.123017100611015	0.707230647967554	0.923295611913498
Merged-chr7-127254265-4	chr7	127253753	127254753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177362, exon 3 of 3)	exon (NM_177362, exon 3 of 3)	6414.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	7.0088080233952	7.16265502514042	7.01098480551947	6.8902530081972	6.99091096182626	6.93116496461839	-0.191762743238145	0.427256375688739	0.794204865817398
Merged-chr13-45371831-4	chr13	45371324	45372324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17918.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.15382773258419	6.28500435216338	5.68152517953893	5.84690199113544	5.73427778156389	5.28900544199834	-0.741270076852326	0.0408152909135335	0.251970659825335
Merged-chr10-76346269-4	chr10	76345761	76346761	+	913.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-970.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	4.5550243718778	4.56045340164808	4.32344865749603	4.51431511399976	4.47350367817447	4.24815933700768	-0.169858843319551	0.70257971246661	0.921908665861083
Merged-chr7-143069990-2	chr7	143069490	143070490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001115085, exon 3 of 3)	exon (NM_001115085, exon 3 of 3)	622.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	4.94239982995581	4.93506764048149	5.10615533122118	4.97436228938841	5.19699582348195	4.99824801650147	0.167375397802581	0.65397307213062	0.903623868780893
Merged-chr19-45673194-4	chr19	45672734	45673734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13041.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	4.77714588584309	4.82861078355778	4.76725634526066	4.81860434392243	5.01846790739147	5.05027112864666	0.383361198244518	0.319034444237879	0.71299998254265
Merged-chr3-132033988-4	chr3	132033495	132034495	+	872.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.86815499088768	3.85869461495025	3.87624187198475	3.7122472486192	3.66526996438918	3.84648838949243	-0.423229055325844	0.417027714743179	0.787777926088596
Merged-chr1-127980231-2	chr1	127979731	127980731	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	111458.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	3.93189114930385	3.88539997736606	4.14642929625346	4.15110310461421	4.33581675274822	3.86666658106281	0.456558583493527	0.373758670472522	0.757546812967132
Merged-chr19-11293627-1	chr19	11293127	11294127	+	722.0	f1_balb.idr	intron (NR_045317, intron 2 of 2)	ERVB4_1B-I_MM-int|LTR|ERVK	-9814.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	6.69053044229254	6.96838313846784	6.87216154910491	6.68052178081418	6.97144183439617	6.88753855763736	0.00958355478502531	0.970801352388879	0.993560292853483
Merged-chr7-113186624-1	chr7	113186124	113187124	+	558.0	f0_balb.idr	Intergenic	Intergenic	-20841.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	3.73806600641002	3.86186739562889	3.71314874997209	3.7261699635714	3.54359560588753	3.73106278850577	-0.375800419681601	0.487506890005227	0.828471974829053
Merged-chr8-79711745-4	chr8	79711229	79712229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357235)	promoter-TSS (NM_001357235)	11.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	7.95834785759272	8.3081508472405	7.94795838691549	7.94531132192194	8.01911830794646	7.85162832854685	-0.204180166545627	0.377386415265788	0.759813415636752
Merged-chr6-114849660-2	chr6	114849160	114850160	+	605.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	72161.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.31817940651604	3.33359482224699	3.26072233182841	3.20490715260579	3.19084848958496	3.33202127659921	-0.274447749127839	0.654635257353434	0.903872559164033
Merged-chr10-4390658-2	chr10	4390158	4391158	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2550.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.37256101481119	4.55389437651953	4.64129073146957	4.72808010693279	4.80925163104276	4.92791575180237	0.708401188888497	0.0854907405152903	0.387151057842401
Merged-chr8-70868714-4	chr8	70868215	70869215	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 4 of 4)	CpG	4775.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	3.39474481481009	3.48412181313593	3.53898281698156	3.02920403345692	2.87672749180079	3.04707995218997	-2.25461195772969	0.00107997998344459	0.0191279213415192
Merged-chr17-5728343-4	chr17	5727837	5728837	+	926.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	MTC|LTR|ERVL-MaLR	-70320.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.41064417368474	4.30401433928446	4.39834482786441	4.31735626550611	4.30198363129445	4.42264701919795	-0.0689107702701506	0.875735562716975	0.971117457237427
Merged-chr8-126548020-4	chr8	126547503	126548503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45433.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.52078041371021	5.19480361590808	5.28425646735793	4.8663579180498	4.61315544584749	4.60687643400852	-1.38428392791678	0.000427238401493342	0.00927462898811844
Merged-chr18-36793864-4	chr18	36793386	36794386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025594)	promoter-TSS (NM_025594)	-37.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	6.35694905935228	6.83819188267176	6.59493572255571	6.49622819330444	6.50351975275299	6.34298424474447	-0.257918846789228	0.3679179412785	0.752923975674939
Merged-chr9-109060327-1	chr9	109059827	109060827	+	572.5	f1_balb.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	-604.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	4.39942301109193	3.87482730444131	4.46180447244624	4.05401867145599	4.01410185945862	4.4492787215286	-0.236755707834931	0.653613086529505	0.903461343339179
Merged-chr11-53931625-2	chr11	53931125	53932125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39922.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	4.4194510413275	4.42082824455183	4.32170775408146	4.35726564230898	4.52711718708993	4.20074906530209	-0.0286227092847266	0.949467289692152	0.988195309248553
Merged-chr2-167300313-7	chr2	167299819	167300819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	48859.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.18872669208151	6.16222511682909	5.95353948780418	5.56311097022387	5.606953723182	5.22268283544941	-1.11497363356921	0.000716582138461879	0.0139084130107618
Merged-chr10-13295274-4	chr10	13294769	13295769	+	798.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	29020.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.45147534155096	4.1673943535525	4.03991758183489	3.98618507974565	3.80557780866285	4.15738847698508	-0.738607939198383	0.146686129835087	0.510979493291873
Merged-chr10-54076462-7	chr10	54075974	54076974	+	985.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008548)	promoter-TSS (NM_008548)	552.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	6.65377541939367	6.74878862816116	6.20089119020629	6.576073190149	6.69845230094858	6.32712599932638	-0.0261363890640372	0.930753626945525	0.984662119275083
Merged-chr3-103848452-1	chr3	103847952	103848952	+	774.0	f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	RLTR22_Mus|LTR|ERVK	-11343.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	3.58410876508121	3.39790874928432	3.23837848927948	3.20874124556167	3.4098306712474	3.53633830262728	-0.116082367323337	0.852497405390216	0.965385693881201
Merged-chr3-52198179-4	chr3	52197689	52198689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70148.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.8919048900323	7.07317778845926	6.78611711146202	6.86178871520458	7.39581845847732	6.81335630884137	0.21006384243895	0.468602516923648	0.818673566064062
Merged-chr4-25281925-4	chr4	25281461	25282461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355512)	promoter-TSS (NM_001355512)	-140.0	NM_001355512	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	6.81670310808891	7.16852707413817	6.99136646681551	6.93714624552858	6.83757056203912	7.13787324260064	-0.0501367634915953	0.84803059136599	0.964318271116593
Merged-chr5-122401452-2	chr5	122400952	122401952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	B3|SINE|B2	9574.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	5.63660540180601	5.37513362818909	5.23114954007149	5.26493682987813	5.37016296372847	5.32843651946224	-0.217609444582819	0.53512990945298	0.853413349144649
Merged-chr16-85099239-4	chr16	85098731	85099731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	74476.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.03959959453957	5.28734976248035	4.60008469625465	4.65614990402674	4.86996173706662	4.83676212032973	-0.498529109264955	0.244735441949956	0.642091964489104
Merged-chr11-118494758-3	chr11	118494243	118495243	+	803.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17911.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.936162109174	5.80067188712724	6.13935651900115	5.58737823187155	5.67481066660242	5.61033270219483	-0.593733639019199	0.0594543807821802	0.315683754458787
Merged-chr2-160368689-2	chr2	160368189	160369189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1624.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.74189065206334	5.74879876754521	5.51614380170878	5.57005354632882	5.72462453946665	5.71879469258893	-0.0158731202672033	0.960256763045978	0.990357400804791
Merged-chr18-62058272-2	chr18	62057772	62058772	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105197.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	4.78013420281811	4.4976672733182	4.7690001527414	5.03769317562402	4.86041577283984	4.94557069998585	0.597351385159901	0.135090119049522	0.491223853222672
Merged-chr5-139666678-4	chr5	139666164	139667164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69669.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.34839397791893	3.57997229058077	3.3960285246602	3.61981828537266	3.49669079837867	3.68399561728624	0.536796717363389	0.356040442799642	0.742919807519939
Merged-chr3-123506996-4	chr3	123506598	123507598	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008939)	TTS (NM_008939)	968.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	4.64775369361168	4.46637595012474	4.47716528517214	4.46128145306456	4.71364572437438	4.50135092200531	0.0883132358932405	0.83699702029753	0.962035641067236
Merged-chr2-49381207-4	chr2	49380717	49381717	+	796.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70269.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	2.47932530544844	2.4454972377809	2.40719708023712	2.71469872184231	2.59501891879067	2.67807529374668	1.28423864948798	0.105010156506989	1
Merged-chr5-20256762-4	chr5	20256225	20257225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349207.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.05277865711337	6.04465634524459	5.87081149414977	5.84337338080593	6.00503103824899	6.21854638467339	0.0452879676265418	0.881190832507645	0.97262624933271
Merged-chr5-91961568-4	chr5	91961063	91962063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	993.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	6.76083958221154	6.76951979472111	6.65487483704645	7.23087966297711	7.40271148232491	7.01965446861572	0.767355386717119	0.00253162474983772	0.0370930502173793
Merged-chr6-86793652-4	chr6	86793193	86794193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013471)	promoter-TSS (NM_013471)	-109.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	7.1000915183635	7.31306483919917	6.49794317279177	6.36135450191153	6.54418565782335	5.65451533004293	-1.22877221226136	0.0468921114758325	0.27413748413413
Merged-chr7-12781147-2	chr7	12780647	12781647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5489.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	4.81610995060269	4.8310800334746	4.47411519784066	4.29132415727521	4.16914905473847	4.26475447535354	-1.23978706013642	0.00536768393547312	0.0643017399472079
Merged-chr15-99392867-4	chr15	99392360	99393360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-87.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	8.30577793085227	8.2734847548407	7.97342063671591	8.31545120229377	8.57604044654068	8.25630324020339	0.27526642878354	0.232401283474742	0.628761339174128
Merged-chr16-38712154-4	chr16	38711692	38712692	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	843.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.22034556590385	4.83450422243688	5.23850893900181	5.87681597933624	6.15119555333899	6.22309853335955	1.85311647810792	1.17520758025505e-07	8.27298412333859e-06
Merged-chr3-65774074-4	chr3	65773585	65774585	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 7 of 12)	intron (NM_001166659, intron 7 of 12)	107857.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	2.31656825521229	2.46609886637567	2.49532479747039	2.16971944764177	2.30354252371562	2.37993809907542	-0.931073397121794	0.278554468765438	1
Merged-chr18-20649614-2	chr18	20649114	20650114	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-15636.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	5.21042366692827	5.08779406953255	5.2011143888677	5.50362621969193	5.46899943708191	5.79175103981653	0.825298833280567	0.0172672399736549	0.146445062045446
Merged-chr8-90877925-2	chr8	90877430	90878430	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	49095.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	7.14175716662708	7.27750314688202	7.10231075058039	7.12284050916651	7.10691852596439	6.70169781739071	-0.266983115471753	0.303877591344665	0.700321189846028
Merged-chr8-31121094-4	chr8	31120548	31121548	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	9202.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	3.90804712129163	4.35680890335495	3.63013147755919	3.67648896900346	3.26338207599289	3.70394805186488	-1.46625504689923	0.0202909614126785	0.163017313626161
Merged-chr7-99136375-3	chr7	99135860	99136860	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	MER21C|LTR|ERVL	4784.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.55056557754388	4.27526906241533	4.61536436360721	4.37837955487563	4.55552446091796	5.0248899681364	0.455509837823725	0.329170033159847	0.721152738507735
Merged-chr6-65137934-4	chr6	65137417	65138417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 2 of 5)	intron (NM_019455, intron 2 of 5)	6813.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.68109094902096	7.14182389232781	6.68455543829213	7.13536018100882	7.10201986580152	7.01472371703854	0.339686557118818	0.211985386182191	0.604420229358776
Merged-chr4-135883419-3	chr4	135882932	135883932	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9586.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	2.51174612246278	2.4442489494268	2.55090349675143	2.78920993915927	2.73757426104204	2.81398734225074	1.6220359789887	0.0368359925967193	1
Merged-chr9-40191268-2	chr9	40190768	40191768	+	889.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NR_153114	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	3.83340608689341	3.71442802354414	3.88563476030064	3.9167994360158	3.51691882544499	3.64527353586706	-0.35474658197231	0.52211059832886	0.847468518536718
Merged-chr17-35739330-2	chr17	35738844	35739844	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33106.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.69815781016946	3.32995951366094	3.44174251464975	3.9424452806405	3.97216562158337	3.57575816115995	1.16908558581595	0.0504071948069118	0.285731724937838
Merged-chr7-88998095-4	chr7	88997593	88998593	+	868.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	340694.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.6184048060827	3.57418779741316	3.73076819984987	3.44871948130226	3.47118813438897	3.42943101599546	-0.67855290291057	0.23299118293115	0.62936691703847
Merged-chr2-167644812-2	chr2	167644312	167645312	+	668.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145538, exon 5 of 6)	exon (NM_145538, exon 5 of 6)	-12807.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	2.26322064046789	2.38185876221865	2.63055430459686	2.49261232983355	2.27513750808093	2.58303650326881	0.141938666679907	0.867156223512708	1
Merged-chr18-23912252-4	chr18	23911763	23912763	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42425.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.69463099700531	4.65546034158946	4.88893737965051	4.95925593237758	4.75119285552865	5.02231752763434	0.374922744344438	0.345716630067842	0.734152876156979
Merged-chr19-12734216-4	chr19	12733699	12734699	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31433.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	4.26885586662583	4.40431422746357	4.14850353554602	4.54275552499228	4.74931751324074	4.31820301894976	0.698886672093282	0.129936092524745	0.482137076320509
Merged-chr9-35122689-2	chr9	35122189	35123189	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-5825.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	4.57767128711727	4.53277740157733	5.05360654794051	5.09288009434754	4.94747804063682	5.72663349585483	1.19003985061147	0.00866164749447688	0.0911798293411837
Merged-chr11-21223754-4	chr11	21223262	21224262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.78464825007661	7.05889777161531	6.6717014902317	6.7200488275478	7.2840739495638	7.04240595501577	0.285419459680867	0.321866560881161	0.715308693619285
Merged-chr7-63939601-2	chr7	63939101	63940101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-686.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	8.31434241563886	8.57654413554718	8.23025467269889	8.27269497064411	8.35662064123685	8.28592928296293	-0.112249585922235	0.606071248434734	0.883852453137866
Merged-chr7-127022227-2	chr7	127021727	127022727	+	868.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010772)	TTS (NM_010772)	-1016.0	NM_001102563	69017.0	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	3.09166599021752	2.89734084090507	2.863200582758	3.02425224762249	2.66757528340394	3.05811728069571	-0.151974553096472	0.836374189797298	0.962001762335242
Merged-chr8-104233181-4	chr8	104232703	104233703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	15355.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	5.42281481628374	5.52246937715811	5.19034958673605	5.00378007362693	4.93609366806676	4.96947471022807	-0.879463725238359	0.015101883866392	0.13332600029228
Merged-chr7-135706004-4	chr7	135705510	135706510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 6 of 13)	intron (NM_001081117, intron 6 of 13)	10369.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.88599209056725	6.91368994766958	6.93308357815968	6.85260885948766	7.12637589751195	7.10931891360618	0.193063115785431	0.435859402933655	0.799403653016169
Merged-chr10-80799703-2	chr10	80799203	80800203	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013651, intron 1 of 8)	PB1D7|SINE|Alu	968.0	NM_013651	20222.0	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	5.92932915300247	5.74770731722706	5.70340627772811	5.67818539597231	5.66756365615977	5.54008936862347	-0.304388079799821	0.333529200445597	0.724468518545896
Merged-chr13-9082356-4	chr13	9081869	9082869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11512.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	7.38404516549664	7.67530265738849	7.36566794903702	7.34803186233331	7.69479904361057	7.11764686314737	-0.0970604634433662	0.71994232598147	0.927969809283981
Merged-chr9-25532335-4	chr9	25531811	25532811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	50714.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.17890314130195	6.61627260879847	6.61369792066252	6.68329939447865	6.57807937681743	6.50175203665856	0.176350078328956	0.537669576348887	0.854765191227326
Merged-chr11-6548272-2	chr11	6547772	6548772	+	732.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	intron (NM_001190343, intron 1 of 8)	1385.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	3.26394603880066	3.4432825693932	3.3279322140202	3.31038087938093	3.15185625829289	3.65416864541035	0.126244881816171	0.843159890006031	0.96330726515818
Merged-chr14-99047032-2	chr14	99046532	99047532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	655.0	NM_175265	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	5.44780812238602	5.42685994041097	5.31693263202562	5.26222642753999	5.63182648268566	5.34899620176143	0.0642672874929551	0.853581475323113	0.965729404686806
Merged-chr2-83759342-3	chr2	83758832	83759832	+	584.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 4 of 29)	intron (NM_008402, intron 4 of 29)	34935.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.42873846150483	4.63430346545905	4.43641706485604	4.20973388266761	3.79263882199618	4.23980438194597	-1.14575100743872	0.0197630255610939	0.160197295159325
Merged-chr8-35400593-4	chr8	35400086	35401086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24845.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.63523828204903	4.88869487702659	4.93485653153047	4.93302504704642	5.04442905885828	4.99956859294729	0.383397623079412	0.322012222714471	0.715384462470548
Merged-chr1-84946210-4	chr1	84945690	84946690	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11107.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	3.70852295684191	3.84604425713762	3.78916727993951	3.63488880404027	3.48916031634579	4.0445866382654	-0.160241278700957	0.778620776213456	0.945520893795831
Merged-chr1-191821447-4	chr1	191820944	191821944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010892)	promoter-TSS (NM_010892)	-29.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	4.32509792934899	4.06310751478898	4.21872469661469	4.27727683206024	4.06369070034234	3.99761943736223	-0.24158493085707	0.617982894788612	0.889069638978004
Merged-chr6-29211982-3	chr6	29211465	29212465	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	CpG	332.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	7.12790217790716	6.63744814611465	6.38580239471375	7.05328645226739	6.55184002230974	6.58034610627572	-0.0201381584665604	0.951077071628569	0.988640991339789
Merged-chr8-83698457-4	chr8	83697899	83698899	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	780.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	6.85303472443515	6.98176484730013	6.92960418664391	7.02623126086362	7.23876954994697	6.95961900810554	0.252998800663171	0.308029562069063	0.70399988465522
Merged-chr3-127568975-2	chr3	127568471	127569471	+	748.083374	f0_c57.idr|f1_c57bl6.idr	intron (NM_197997, intron 7 of 25)	MTC|LTR|ERVL-MaLR	15482.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	3.07942112020851	2.96197167687046	3.03326156263153	3.83623736429957	3.89095709308281	3.65757989643385	3.40489395382304	2.55042924029182e-06	0.000123639720613915
Merged-chr2-155405885-4	chr2	155405383	155406383	+	857.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24027.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	6.73830901820028	6.82065598959581	6.76164807211089	6.26399703071638	6.47460468289774	6.51048303259747	-0.565874361876383	0.0309464862825953	0.212924046172824
Merged-chr2-119896856-1	chr2	119896356	119897356	+	1000.0	f0_c57.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-372.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	7.15926579251569	7.40145845574208	7.00282461679104	7.23123353096893	7.2612222245794	6.90070951028527	-0.0844635923536375	0.748640429641163	0.937087780077821
Merged-chr8-83310055-3	chr8	83309505	83310505	+	902.677795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19657.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	2.70662880977787	2.47722757891461	2.54228490834117	2.54112646923698	2.37362502805865	2.67911151610973	-0.27920791074213	0.728622860875994	1
Merged-chr4-45011728-4	chr4	45011222	45012222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163284, exon 1 of 2)	5' UTR (NM_001163284, exon 1 of 2)	690.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	8.28060829212888	8.55493019516879	8.18325916193019	8.33801415648936	8.68523511278265	8.35998420622329	0.169869152529461	0.471282432150308	0.819917078029108
Merged-chr4-115000005-4	chr4	114999502	115000502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009185)	promoter-TSS (NM_009185)	-116.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	6.76449254087224	7.04270449225132	6.87445867475914	7.45917691107668	7.4596028266928	6.90287366046912	0.615537410257142	0.0266427363340489	0.194225407822283
Merged-chr17-83707588-2	chr17	83707088	83708088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	B1_Mur4|SINE|Alu	1425.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.44314956615992	6.79906899534853	6.66686077841614	6.88576746077056	7.48553234478362	7.49141977403481	1.02607429416877	0.000485609473259815	0.0102725419270846
Merged-chr19-40679833-4	chr19	40679325	40680325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20055.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.20916024872726	7.27250273096131	7.2713726406145	7.303750695101	7.30370751455151	7.16121114253437	0.0174886379691918	0.939482608310838	0.986720663284284
Merged-chr1-182954855-2	chr1	182954355	182955355	+	997.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	67.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.86013314681941	3.94050357523145	3.66671272855368	3.65867655108947	3.78959322432189	3.44636021435883	-0.605521344991089	0.289323144975811	0.686925761774448
Merged-chr5-103722194-3	chr5	103721711	103722711	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-31951.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.18421012422725	6.00958660042888	5.8712696262373	6.51538914737213	6.63971154791582	6.54437184037297	0.879813470193975	0.00183974632071347	0.0289598206307088
Merged-chr11-46808452-4	chr11	46807987	46808987	+	831.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.24820512298483	4.16537357194096	4.34980749451881	4.16921922102945	4.17340418801203	4.24262682683109	-0.160437897296613	0.726984365221686	0.930086065338964
Merged-chr9-90251233-4	chr9	90250748	90251748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	19521.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.97855723636129	6.77780782240142	6.70466943706507	6.7635042523501	6.73001675438793	6.84049371557027	-0.0870570145839358	0.73266290424449	0.931839011711124
Merged-chr1-72307536-4	chr1	72307048	72308048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009533, exon 1 of 21)	exon (NM_009533, exon 1 of 21)	127.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	5.64849408192828	6.10854620831058	5.8444391246865	6.04456592637105	6.3417699615179	5.71815507476059	0.327206541180722	0.343510550305254	0.732367959280244
Merged-chr11-78114840-3	chr11	78114338	78115338	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20165.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	3.4355508642558	3.15248582266125	3.43916552261851	3.53641594634983	3.25043982710212	3.34325420715291	0.134447538072082	0.829209721036214	0.959990063227229
Merged-chr9-32508885-4	chr9	32508386	32509386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32566.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.54991472138611	6.21526486256444	6.56569395182649	6.46868904901295	6.45080785223096	6.45072519221937	0.0145662891796895	0.958202063570211	0.990000537228272
Merged-chr7-118802923-3	chr7	118802425	118803425	+	847.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	52688.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.07531591201215	4.22245612191424	4.13087760310915	4.12878647564917	4.36147880542363	4.05283804424624	0.147141250798782	0.759545980856859	0.940480684153832
Merged-chr17-45557546-4	chr17	45557040	45558040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1840.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	7.70414016459003	6.72881127001269	7.11517100171006	7.33674469641572	7.25391352304174	7.3722816068128	0.0974122954133914	0.759622554866396	0.940533511083182
Merged-chr1-194994447-2	chr1	194993947	194994947	+	728.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17488.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	6.51544580873115	6.72541734510888	6.55557494759797	6.43373048765616	6.77239276109467	6.79056772194391	0.111954988296099	0.68263810729436	0.915155649724165
Merged-chr12-3427578-5	chr12	3427069	3428069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	712.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	8.47373634213187	9.09596455725864	8.80990959607025	8.64650701967355	8.84452386784988	8.84364994129542	-0.0542732711903787	0.823890075008393	0.958451755471188
Merged-chr4-108387796-4	chr4	108387283	108388283	+	883.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4128.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	2.96146361244772	2.79190752621808	2.88001724515167	2.86657800975604	3.14569546950307	3.0728431027561	0.737788491000351	0.29120936464282	0.688953904178097
Merged-chr16-91480682-3	chr16	91480170	91481170	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4545.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	3.02033270670148	2.97635654849859	3.04820823136348	3.11675019931512	3.49721661191712	3.29739565086232	1.31722008592489	0.0468788426120594	0.274117690517515
Merged-chr14-63122645-4	chr14	63122122	63123122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	CpG	160.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.93682377879991	7.82057044987819	7.94408131349682	8.01833480889935	8.06879497550642	7.73550755474498	0.0795433330953673	0.723621636416057	0.929080851011554
Merged-chr9-108049986-2	chr9	108049486	108050486	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_177910, intron 3 of 8)	intron (NM_177910, intron 3 of 8)	722.0	NM_001357682	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	6.56454101277499	6.72007238865921	6.46583353868673	6.53162656368056	6.88739065983758	6.3491731863688	0.0494022055004492	0.865658685776286	0.968641478520565
Merged-chr2-167502495-2	chr2	167501995	167502995	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360930)	promoter-TSS (NM_001360930)	-948.0	NR_153838	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	3.96380041029419	3.93248219363078	3.88288266814051	3.8504819863168	4.06859868703347	4.00178546039831	0.154502255163187	0.757952179581515	0.940006510270311
Merged-chr2-167320559-2	chr2	167320059	167321059	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	28619.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.25970056497347	6.46318880534232	6.16166355598278	6.10996625033481	6.31786921838099	6.13460109142057	-0.184833399088519	0.521631909070967	0.847183372504239
Merged-chr18-77047375-4	chr18	77046859	77047859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027721)	promoter-TSS (NM_027721)	-63.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	3.92370024168172	3.80483700731993	3.81450688350969	3.62257019763856	3.82981832859484	3.72845308776955	-0.375294675270373	0.479915687320122	0.824391932626821
Merged-chr10-121365463-3	chr10	121364944	121365944	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	CpG	354.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	9.25402133969409	9.58682062274574	9.12948569540779	9.08735114926417	9.35715233642616	9.01685079372328	-0.239028301433683	0.301353780416958	0.698077163741839
Merged-chr2-122163941-4	chr2	122163448	122164448	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3248.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	7.61479363990726	7.81344067321616	7.50526428922499	7.50561966019054	7.93804326681	7.57221449503509	0.0559635575211359	0.824225541846603	0.958523256704056
Merged-chr14-31391093-2	chr14	31390593	31391593	+	904.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B4A|SINE|B4	26584.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.13222696148642	6.98808492638289	7.16378432783408	6.97676713209125	6.88084940600139	7.13712168965528	-0.149950385179845	0.541930377485421	0.857018905554292
Merged-chr6-97294249-4	chr6	97293768	97294768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41488.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.54360630561465	5.27467122204717	4.89509231756309	5.3568872566825	5.68440582315591	5.08375486451887	0.264144381931067	0.520670566362257	0.846662720861138
Merged-chr19-4269212-3	chr19	4268728	4269728	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356620)	promoter-TSS (NM_001356620)	5.0	NM_001356620	245857.0	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	SSH-3|SSH-3L	slingshot protein phosphatase 3	protein-coding	4.85754323826381	4.84833957434124	4.93289980115366	4.41207711007966	4.25718535476794	4.10508360658853	-1.50198902061617	0.000662764858577501	0.0131240690986475
Merged-chr15-82126825-4	chr15	82126350	82127350	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310435)	TTS (NM_001310435)	-1072.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	7.44987236196837	7.34795496664637	7.21942829614522	7.53768456157827	8.05906381760605	7.66878039680649	0.634358034660783	0.0136778580504559	0.124847215079239
Merged-chr1-173741831-4	chr1	173741327	173742327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-18.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	8.47461827902189	8.95750359365115	8.41802546026535	8.42747593604544	8.87145002161974	8.24831695968442	-0.130872486915535	0.634405964588804	0.896346727934273
Merged-chr7-100503536-5	chr7	100503027	100504027	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 7 of 7)	intron (NM_153527, intron 7 of 7)	10169.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.55692236014777	5.54063620048292	5.74566190246794	5.69974157782753	6.0610072485451	6.18366377195139	0.689265458842408	0.034335262894542	0.226869574758124
Merged-chr2-102154969-4	chr2	102154476	102155476	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 1 of 5)	Charlie19a|DNA|hAT-Charlie	31484.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.81080413740598	3.73547340260883	3.99742464460413	3.28323934809017	3.4855812855618	3.97641923329282	-0.798953768343516	0.197965873837985	0.586079286640256
Merged-chr7-27560318-2	chr7	27559818	27560818	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122767)	promoter-TSS (NM_001122767)	-158.0	NM_001122767	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	3.07039548770243	2.99081334634936	3.41918865993051	3.33722184928559	3.04241787033655	2.97593526013666	-0.161449536235713	0.816025823637337	0.956592281500902
Merged-chr10-57795762-2	chr10	57795262	57796262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1218.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	7.90043148063787	8.09922044907162	7.77702292435453	7.96386404945434	8.32832683127489	7.78035541202415	0.16608872033882	0.512848042154265	0.842142798618015
Merged-chr9-40814852-3	chr9	40814335	40815335	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	13562.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.56509871824428	4.57661158624901	4.4160969636181	6.10668335969496	6.53802479078258	5.81557365415839	3.37086419461195	1.10998914657187e-15	3.4843816868143e-13
Merged-chr8-40424224-3	chr8	40423710	40424710	+	938.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178395, intron 1 of 12)	CpG	395.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	2.73236934588561	2.2781231090585	2.4609443947386	2.12434643731028	1.99534408251567	2.27118884804712	-3.10196250620084	0.00521676318190789	1
Merged-chr14-121423639-4	chr14	121423137	121424137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44407.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.23209715251607	5.68093297925842	6.18837026630191	6.20524528311692	5.85351914665339	5.98979390908474	-0.0532087910411664	0.873222386621473	0.97040331531529
Merged-chr1-118310530-2	chr1	118310030	118311030	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011650, intron 1 of 5)	intron (NM_011650, intron 1 of 5)	198.0	NR_153836	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	5.06418003295776	5.59459453342191	5.56400847118544	5.54547983387915	5.73895623772328	5.73113108482271	0.467300973196062	0.192202712144071	0.57920205203809
Merged-chr5-115260511-4	chr5	115260012	115261012	+	991.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	12383.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	5.41139637978627	5.47952783239581	5.99643857924069	5.61667338304946	5.73391851118873	5.68405920864223	0.0725401707392101	0.835732154835849	0.961833512767553
Merged-chr1-156680878-4	chr1	156680349	156681349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-6510.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	7.2055360843493	6.83356203382827	6.99877306125965	6.19130225282232	5.97812181530524	5.95181564957902	-1.57132214508053	2.85716957214163e-08	2.35618796589456e-06
Merged-chr6-42340333-4	chr6	42339864	42340864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-9464.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.04503779172364	6.0042429474349	6.04753802089792	5.88340984287175	5.96903499138148	5.97219836344124	-0.155267797269281	0.590862401656885	0.877301111216348
Merged-chr13-58460062-2	chr13	58459562	58460562	+	729.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger10|DNA|TcMar-Tigger	-56719.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.43017099594938	3.39505023350587	3.54438224732373	3.51674967446498	3.16931808721086	3.50936994816083	-0.200662457102844	0.742175682589226	0.935149189479947
Merged-chr19-11465067-4	chr19	11464618	11465618	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4250.0	NM_001166376	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	4.59954056322033	4.94334345263238	4.63324925983577	4.50603432864524	4.77544639895933	4.89028201363391	-0.0251277326834443	0.952962822835129	0.989359300570295
Merged-chr2-53001316-3	chr2	53000807	53001807	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MER119|DNA|hAT-Charlie	143439.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.04682573757543	3.02538989000252	3.09286534432392	3.2757436933412	2.96471264929915	2.98320135298453	0.12969556822834	0.846794379038265	0.964111312125802
Merged-chr4-43563282-4	chr4	43562780	43563780	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011602)	promoter-TSS (NM_011602)	646.0	NM_013497	12913.0	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	6.41809591830632	6.3542660289083	6.45293057076538	6.6320244810125	7.16423691106317	6.58491688291514	0.679652929254263	0.0214602380874292	0.169257202917423
Merged-chr2-132028889-2	chr2	132028389	132029389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	1099.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	6.26470273602187	6.58839480767483	6.38227954379557	6.13282742543823	6.13097029909572	6.28844659809844	-0.400693358265037	0.158679391151886	0.530448546822792
Merged-chr14-46999870-4	chr14	46999366	47000366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-1474.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	7.63406448098722	7.03883629545331	7.12844165790781	7.84210917497262	7.63249466953028	7.33465686286501	0.472794626390807	0.101126158388226	0.424096713049379
Merged-chr17-88529015-4	chr17	88528520	88529520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1104.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	5.71035030327546	5.57882734253351	5.7097607639354	5.92337320195784	6.44909466574823	5.63068010308065	0.704075299333524	0.049096702530021	0.281565815984423
Merged-chr7-110921878-3	chr7	110921390	110922390	+	565.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 9 of 20)	intron (NM_194464, intron 9 of 20)	16905.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	4.42458310703208	3.94753069178423	4.33085178844328	4.01103948458667	4.18891923302856	4.26830703618338	-0.246916229157591	0.620164364313478	0.890026802452616
Merged-chr9-57537725-6	chr9	57537242	57538242	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166364, exon 1 of 5)	exon (NM_001166364, exon 1 of 5)	214.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	5.90589444165514	5.90683232993478	6.40168663901696	5.74591528351723	5.76936575565834	6.1699566603542	-0.316429764080982	0.349099458222311	0.737161977407996
Merged-chr13-41825737-3	chr13	41825239	41826239	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	21749.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	3.79098736103356	3.88947419239237	3.69158175887945	3.643605452856	3.63760686694636	3.91158076033279	-0.227974442692838	0.673590094803793	0.911543653267097
Merged-chr17-71504043-4	chr17	71503538	71504538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023294, intron 13 of 16)	intron (NM_023294, intron 13 of 16)	22819.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	5.3175915256531	5.37002773838292	5.45085228799907	5.47240560512109	5.63004845852466	6.02395935263108	0.64541383797056	0.0640434151733883	0.329853818983591
Merged-chr18-39855891-3	chr18	39855392	39856392	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82395.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.91449695375772	3.81688277456718	4.2162370986939	4.05756926307494	3.63907881696492	3.81775400795546	-0.425311829549595	0.435327633951524	0.798984069301182
Merged-chr11-118490182-5	chr11	118489689	118490689	+	753.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359368)	TTS (NM_001359368)	13357.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.24485551324981	4.49425614619129	4.49548795535371	3.82045403603726	3.85289556780469	3.98819297179896	-1.5346590747372	0.00186277699407806	0.029239379008347
Merged-chr2-25181135-1	chr2	25180635	25181635	+	650.0	f0_balb.idr	exon (NM_025980, exon 1 of 1)	exon (NM_025980, exon 1 of 1)	377.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	4.05243022961073	3.86327044852267	3.98046404404612	4.1562555805131	4.04621488847251	4.00035592193249	0.306962811910062	0.532468955930856	0.851971173271146
Merged-chr6-136716277-4	chr6	136715786	136716786	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-54393.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.53148442908617	3.2002645775395	3.433828867192	3.82327181397816	3.67003185731149	3.77428291761463	1.29180550636451	0.0288726134214723	0.203872404749988
Merged-chr3-88325760-2	chr3	88325260	88326260	+	933.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020003, exon 2 of 6)	exon (NM_020003, exon 2 of 6)	737.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	4.60783034826334	5.25412197100895	4.84224612371057	5.1249693789888	4.92280301939798	4.86993332083041	0.0863620783275253	0.839377002355682	0.962784121274377
Merged-chr15-89074182-4	chr15	89073676	89074676	+	868.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040417, exon 2 of 4)	non-coding (NR_040417, exon 2 of 4)	1678.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	3.30401646215329	3.37651897145683	3.64481850210312	3.64845519848242	3.56325638144658	3.8118256989748	0.832767878278038	0.153998806206575	0.523165395577891
Merged-chr5-113842002-4	chr5	113841524	113842524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011779)	TTS (NM_011779)	-11523.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	4.23928126865862	4.40398116543178	4.3617421274076	4.70780767086528	4.76813667724743	4.13402989982898	0.606788120535098	0.20436772569624	0.594935091478598
Merged-chr17-35128905-2	chr17	35128464	35129464	+	770.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018816)	TTS (NM_018816)	2562.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	2.34875983382061	2.38048842092181	2.64529956212327	2.2567370330363	2.39041825149736	2.34603423587483	-0.801171044009505	0.344571317916919	1
Merged-chr17-35426239-2	chr17	35425735	35426735	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207648, intron 3 of 4)	intron (NM_207648, intron 3 of 4)	1358.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	2.47159443996738	2.2037762016585	2.22199426818147	2.36306864764066	2.29226535066105	2.49487181703439	0.484526759987772	0.5756623109614	1
Merged-chr11-58307079-4	chr11	58306568	58307568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182996)	promoter-TSS (NM_182996)	-1.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	4.28411289133675	4.47256028098405	4.52912737936402	4.53416887758709	4.22277262984629	4.5551947859182	0.0213700382636892	0.962251178089374	0.990805544195776
Merged-chr8-116243250-4	chr8	116242757	116243757	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261758.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	3.70212572055254	4.09729267073545	3.95037593924922	3.7830628088972	4.14676304869151	3.76086751858745	-0.0258160977692199	0.962693185682615	0.990954099019967
Merged-chr9-64450059-2	chr9	64449559	64450559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	64433.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	2.0215863774945	1.92032382481548	2.15120083047425	2.08480043070467	1.78963510773685	1.81355061348129	-1.05699953680821	0.304918854369114	1
Merged-chr13-52025610-2	chr13	52025110	52026110	+	652.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71131.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.25719292804597	3.14598108643033	3.4682939570463	3.24127622961209	3.16108660776668	3.32754977109401	-0.204213903282529	0.745553201407613	0.936219268400062
Merged-chr19-10946864-4	chr19	10946356	10947356	+	958.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2410.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	6.89214632713669	7.05578114965864	7.2131615808498	7.18593594675759	7.29750026249133	7.27062696026244	0.299962243124244	0.217154810246836	0.610881487086205
Merged-chr13-103893225-4	chr13	103892722	103893722	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	27364.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	3.60889948349152	3.66002667546065	3.5194029254722	3.4926871963333	3.65316470278478	3.69703926982615	0.0523452248767321	0.925309252038926	0.983166193538686
Merged-chr5-66005942-2	chr5	66005442	66006442	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1657.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.08538988670002	3.08067042918862	3.6993432881182	3.66379372517078	3.47717192954594	3.7703021253463	-0.166566151661617	0.814849531278691	0.956370078970016
Merged-chr10-81296230-2	chr10	81295730	81296730	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	3267.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	3.89668957510917	4.2391927919853	4.38514375091661	3.94612164826237	3.76646747565833	4.01815446079384	-0.812344654197633	0.118384699084088	0.45978215625219
Merged-chr16-30764342-4	chr16	30763844	30764844	+	846.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	164621.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.91776237549142	4.03694017175139	4.50853949685362	4.09977748858587	4.07398093644555	4.07182676759065	-0.243483223106673	0.635330043337803	0.896470397811433
Merged-chr5-139017609-1	chr5	139017109	139018109	+	963.0	f0_c57.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22656.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.53908623610008	6.46010379244902	5.95005286312611	6.49395344663519	6.35159284750187	6.28924735137806	0.0436120564544149	0.886864993871207	0.973794308941933
Merged-chr2-117019729-1	chr2	117019229	117020229	+	983.0	f1_c57bl6.idr	Intergenic	Intergenic	-101342.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	5.66246476719924	5.70861232245741	6.00577940412105	5.57408529183081	5.96534732665328	5.90983414477206	0.0704540398000186	0.8305174259858	0.960308134590845
Merged-chr2-150903906-3	chr2	150903374	150904374	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356549, intron 1 of 13)	intron (NM_001356549, intron 1 of 13)	857.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.19815890102415	6.69883357901849	6.38757012298345	6.2502920078506	6.29451234368117	6.29191002997138	-0.281246823056978	0.339765254399567	0.729397455488285
Merged-chr2-30416925-2	chr2	30416425	30417425	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 1 of 9)	intron (NM_138748, intron 1 of 9)	875.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	4.7700303278912	4.62207127681907	5.08581318114391	4.76612643593676	4.71043232266848	5.02216947166886	0.0058393515538037	0.988805780788382	0.997426973334006
Merged-chr7-130646933-4	chr7	130646439	130647439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45617.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	8.2054344115019	8.27608071511017	7.61640308635449	7.8539498398073	7.83722962582874	7.46195409275459	-0.480532631410034	0.0814701934100524	0.377528763503281
Merged-chr2-165882639-2	chr2	165882139	165883139	+	913.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-361.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	8.42397434442862	8.40783833924456	8.11759951761962	8.36844174430898	8.4458149116065	8.01777000960981	-0.0439885558761488	0.85251663033243	0.965394245657955
Merged-chr8-27019665-2	chr8	27019165	27020165	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4134.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	4.03589255319369	3.81686245658212	3.67779277704734	3.77762892266394	3.6253066167897	3.51993358738562	-0.691020930599003	0.216575277967237	0.610067901049387
Merged-chr11-95836444-2	chr11	95835944	95836944	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 2 of 7)	intron (NM_025659, intron 2 of 7)	-5851.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	4.78649036669883	4.76323512998593	5.12718243261608	5.20195213657605	4.99297468156541	5.15876693809149	0.487940089624074	0.206150992432089	0.596809057329073
Merged-chr11-22809581-4	chr11	22809089	22810089	+	972.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50146.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.33697112159182	5.11097633111586	5.26171217981432	5.45395660955545	5.71804056507624	5.6728440992719	0.742143527708178	0.0296221969273475	0.20716118355444
Merged-chr3-152406758-7	chr3	152406242	152407242	+	935.9206539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	B1_Mus1|SINE|Alu	10058.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.5879208314316	5.87658677794486	6.00681223715187	5.47415304567415	5.54264399096336	5.81958447109502	-0.396351999000844	0.236801063994084	0.633237835240546
Merged-chr5-110447386-4	chr5	110446890	110447890	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	1113.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.54210024264866	4.5210458541107	4.50248512682832	4.44536730381169	4.57041265505359	4.52728787475271	-0.0138293498107946	0.97374209180196	0.994100068397348
Merged-chr10-24638929-3	chr10	24638403	24639403	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43461.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.50406778930596	6.49250625462583	6.56195628122879	6.32031525788145	6.34810376929302	6.18245542532385	-0.367923946168381	0.169777734802539	0.546873733675896
Merged-chr13-101906582-4	chr13	101906078	101907078	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138361.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.12014034498313	6.75771480428248	6.80428131739041	6.92137472464553	7.05076274660364	6.96478834979527	0.112489645481737	0.664625243317744	0.907708448846662
Merged-chr4-132030208-4	chr4	132029661	132030661	+	956.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	L1MC5|LINE|L1	18917.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	5.76051568216074	5.7813692027638	5.53009976722465	5.82089989349913	5.53861994177797	5.40717038699973	-0.180609285365669	0.589799934694081	0.877010728792989
Merged-chr16-8834580-2	chr16	8834080	8835080	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	4480.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.77023579095858	3.39475296534087	3.79983959760717	4.1047225101552	3.65908731676068	3.87001449258898	0.726263089693912	0.209509028710359	0.601085495142021
Merged-chr18-80420792-2	chr18	80420292	80421292	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 11 of 12)	intron (NM_026295, intron 11 of 12)	48875.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	3.29213160824283	3.73440192479666	3.40541907498245	3.62807471249968	3.54560926855751	3.58973416369608	0.316373097505494	0.599012982653841	0.880902871165758
Merged-chr5-87056026-4	chr5	87055540	87056540	+	961.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	36515.0	NM_001029867	231396.0	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	3.68014923585642	4.02467346000868	3.62429761411068	3.76165437487116	3.53433463080773	3.40133960122624	-0.733058808851168	0.215643481843399	0.609048894570221
Merged-chr1-105998308-3	chr1	105997960	105998960	+	908.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8054.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	6.569016881297	6.60016173449951	6.86008436768044	6.64121196964853	6.48721341968876	6.43577770583504	-0.236417004299834	0.379697293039257	0.762033755102441
Merged-chr8-27021876-2	chr8	27021376	27022376	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1923.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	6.25255543339487	6.29993067473072	6.0549186025947	5.93187207928477	6.12930333836613	5.92596874262704	-0.353726246354027	0.228530684768031	0.623715045639993
Merged-chr18-61078021-2	chr18	61077521	61078521	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 16 of 22)	intron (NM_008809, intron 16 of 22)	-27551.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.35132364447237	3.16903737911512	3.36703330966267	3.73545365826627	3.40619678861785	3.89718683695093	1.45118150788637	0.0192466547932016	0.157442469011094
Merged-chr9-99107847-4	chr9	99107367	99108367	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	32344.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	6.22584010699293	6.15428927197879	6.29283690629691	6.35624554439404	6.57114855686182	6.25166819435428	0.312588150916611	0.265993594217328	0.663824402864358
Merged-chr4-152152002-2	chr4	152151502	152152502	+	879.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_207687, exon 1 of 16)	exon (NM_207687, exon 1 of 16)	205.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	2.98800979682283	3.04337739524676	2.99740820713396	2.76294180112003	2.76691046886583	3.12614940968451	-0.582488665008096	0.414254168879599	0.785695810082599
Merged-chr16-33751748-4	chr16	33751246	33752246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-42291.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	7.38997150561854	7.39785700590935	7.30256221395936	7.1191444261574	7.26935538918272	7.0088218835936	-0.33016906016312	0.163836236794611	0.537798828885102
Merged-chr9-118705755-4	chr9	118705238	118706238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	MTD|LTR|ERVL-MaLR	-5954.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.80820626717059	6.80377899067882	6.62718845986307	6.60445350790898	7.03182782193432	6.99963732286831	0.217613968945227	0.422157940943732	0.790986465582338
Merged-chr15-86167288-3	chr15	86166816	86167816	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-18412.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	7.37886938913028	7.63690388114726	7.43523998614596	7.73269854068592	7.9247056499541	7.14328181800097	0.236051830775427	0.407042349496784	0.781263634491412
Merged-chr13-69535407-1	chr13	69534907	69535907	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-1543.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	8.40645181243601	8.69983404894851	8.22090550533185	7.72315732176446	7.77002182916943	7.28215786805433	-1.19288681233785	5.26528498624309e-06	0.000231683676962092
Merged-chr15-103364419-2	chr15	103363919	103364919	+	910.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	2372.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	2.63534089845608	2.75401446660185	2.94383259101725	2.7014124373004	2.67168487315452	2.78281178253119	-0.328184095169838	0.657244127601617	0.904798742244684
Merged-chr10-119055422-4	chr10	119054897	119055897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4898.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	8.22143026662332	8.13958052335293	7.57181337910959	7.99742382601094	8.35535431847069	7.60772678603512	0.0230592160692103	0.938653199282247	0.986515091506254
Merged-chr10-59309139-2	chr10	59308639	59309639	+	676.458374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14157.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.52726412357102	3.50887166824261	3.34204366355401	3.45917174628817	3.24080355877139	3.63120076022346	-0.0783618285525408	0.897310044786308	0.975979061797612
Merged-chr6-42398469-4	chr6	42397991	42398991	+	743.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1747.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	3.9014757037548	3.82063877996904	3.47776961129593	3.46579839376221	3.38586860586651	3.71492253917842	-0.804321896913301	0.17424727439401	0.553403610743454
Merged-chr13-119327068-4	chr13	119326559	119327559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2F|LTR|ERVL	81952.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	5.54456380233341	5.94115730384143	5.65369213556977	5.69732190881306	5.93524065248421	6.21770567160787	0.410270856782182	0.227046960178998	0.622106278404046
Merged-chr8-104119084-2	chr8	104118584	104119584	+	561.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	intron (NM_009868, intron 2 of 11)	-13211.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.61811188354608	3.46745384996689	4.00836301182768	3.81175753748563	3.67237750600142	4.16076494159259	0.577859701375986	0.323788869643721	0.717052784321581
Merged-chr13-110558065-3	chr13	110557559	110558559	+	624.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163015.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.88129067148783	3.90685517243174	3.88880106865465	4.64231258453608	5.10399948716235	4.89510451207904	2.69166223958127	3.88023974078566e-08	3.07492369858374e-06
Merged-chr12-70148909-1	chr12	70148409	70149409	+	673.0	f1_balb.idr	Intergenic	Intergenic	-5262.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	4.42729132820107	4.86283735154347	4.47034664679675	4.66147917632318	4.89328520640057	4.29978497900185	0.103969168419776	0.826285619739973	0.959130347937145
Merged-chr15-31531806-2	chr15	31531306	31532306	+	998.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-769.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	6.76931318089928	6.84731033557239	6.80261019204167	6.64840130974224	6.65784529294616	6.47771420152247	-0.319820029653963	0.208391339910909	0.599309667552861
Merged-chr10-88379160-4	chr10	88378701	88379701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004164)	promoter-TSS (NM_001004164)	-211.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	5.61562469358773	5.28098786903923	5.678848802285	5.64468295410883	5.06635574272316	5.47063140997087	-0.232925935401762	0.537150586790367	0.854311531235259
Merged-chr15-80948430-4	chr15	80947908	80948908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-82.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	6.35333716055536	6.6574231591777	6.56478972066205	6.36683544076709	6.5784733131422	6.40958232436021	-0.113800925349114	0.680330415458858	0.914217125833247
Merged-chr11-4194877-4	chr11	4194410	4195410	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8077.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	7.22096698474492	7.21586638905992	6.44473131015473	6.6667526845633	6.80865200501105	5.98515763880955	-0.729568905423603	0.0462800776299598	0.272176502614853
Merged-chr2-156189429-3	chr2	156188910	156189910	+	745.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7237.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	6.17793667554499	6.39453799752346	6.14215957432884	6.36784430931482	6.6725516920597	6.63565272673303	0.517058959346111	0.0680922989709386	0.341417536171971
Merged-chr19-36833501-5	chr19	36832969	36833969	+	790.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	-763.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	6.46469877578605	6.587469564057	6.60869956902193	6.72741525813594	6.79852629378868	6.39505305551433	0.176173244863957	0.519134068100339	0.845629761325035
Merged-chr9-25151343-1	chr9	25150843	25151843	+	1000.0	f0_c57.idr	5' UTR (NM_020586, exon 1 of 8)	5' UTR (NM_020586, exon 1 of 8)	438.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	8.19124945779392	8.41591639877429	8.21003784145885	8.33358525835995	8.10704706984387	8.37557231549424	-0.00745708055732718	0.97291458320735	0.993897323428832
Merged-chr9-120492177-2	chr9	120491677	120492677	+	788.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-429.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	6.05361131528397	5.76359139922244	6.042513482878	6.03728487566134	5.38664061591335	5.20386408249036	-0.638805495977325	0.0982102632012997	0.417772982783845
Merged-chr18-9555237-2	chr18	9554737	9555737	+	862.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64232.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	4.55333624563034	4.64936168622683	4.61120801759336	4.36767765193765	4.17150541013596	4.29334391768407	-0.848799437152968	0.0521744925265643	0.291913338767507
Merged-chr2-143948169-4	chr2	143947646	143948646	+	987.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 23 of 23)	intron (NM_024281, intron 23 of 23)	32815.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	4.88585778149203	4.62040232778277	4.75598859134706	4.87005502959494	4.8845623881227	4.7431071075753	0.18268523041272	0.645906394184076	0.900777348480444
Merged-chr4-3680953-2	chr4	3680453	3681453	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	2832.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.19044333882925	6.98022071375411	7.06915227515207	7.54974819613992	7.83727016425761	7.66813447256763	0.900730353183139	0.000158014099928749	0.00414183194240544
Merged-chr11-8635843-2	chr11	8635343	8636343	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	28692.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.34985913169206	3.50232642267835	3.65578812348335	3.23465860981176	3.17155926342841	3.72435137897347	-0.417634599021453	0.51667706713357	0.844296391152365
Merged-chr4-124851236-4	chr4	124850733	124851733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	474.0	NM_153566	230734.0	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	7.76525661689857	7.82638044343567	7.7237495654144	7.90042958385966	7.27703975765566	7.71919787577344	-0.171341153328622	0.509874680309969	0.840593094527851
Merged-chr19-41264071-4	chr19	41263544	41264544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-40.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	8.93114460491843	8.66188681577895	8.68696196786419	8.87302059324765	8.51329140875509	8.81061961003852	-0.0386277122899364	0.862666070771823	0.968083292979043
Merged-chr19-5650909-2	chr19	5650409	5651409	+	737.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164482)	TTS (NM_001164482)	12798.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	4.1642237653398	4.00703489878238	5.02171344209185	4.23884229680711	4.36930771976693	4.93537551867457	0.136017807349384	0.877387113310807	0.971560353131186
Merged-chr11-99043154-4	chr11	99042648	99043648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010517, intron 1 of 3)	intron (NM_010517, intron 1 of 3)	1904.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	5.42577397198502	5.36084189467036	5.87436066046281	5.05989559097743	5.1719795537457	5.75643707871855	-0.402643164664069	0.31743533139807	0.711302795223616
Merged-chr2-132686966-4	chr2	132686471	132687471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358260)	promoter-TSS (NM_001358260)	40.0	NM_001358260	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	7.02080850070043	6.71388304468663	6.97089775101588	7.12423063668895	7.31276900844096	7.06910594997531	0.415067624470345	0.10300048078965	0.427924106528119
Merged-chr8-104442943-4	chr8	104442429	104443429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013380, exon 1 of 13)	5' UTR (NM_001013380, exon 1 of 13)	118.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	6.45605847991433	6.4825548653441	6.33514777144594	6.60881592343812	6.11488339280436	6.45173156988838	-0.0465454123713138	0.873661172114383	0.970440430875665
Merged-chr12-104178393-2	chr12	104177915	104178915	+	565.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24543.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	3.42573863286589	3.47200476676733	3.25700488826739	3.53324629907567	3.60095822935719	3.71738324364841	0.809052151082305	0.169407867354248	0.546254207588152
Merged-chr17-36992901-3	chr17	36992401	36993401	+	878.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3397.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	3.75755838939246	3.78872095324326	3.76791608423462	4.05556793426216	3.78601288533853	4.03579478119407	0.586547116569862	0.259210733108477	0.656825376873982
Merged-chr9-64774528-4	chr9	64774018	64775018	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36493.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	6.62900047079416	6.28353296274251	6.42150923071778	5.81386724620054	5.79749159758286	5.66820539785209	-1.17252235077257	9.22827297672923e-05	0.00265248248485813
Merged-chr2-75698249-4	chr2	75697729	75698729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	6434.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.89635189708515	6.08656013129505	5.58626200580127	5.72508179421643	6.10300216801763	6.20694175218948	0.245901734355632	0.465929940287683	0.817266460944204
Merged-chr2-5579597-4	chr2	5579107	5580107	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	96439.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.38670157677935	3.27556658053372	3.25074246367788	3.10852283633432	3.46358854514441	3.07943136348331	-0.269229644096069	0.684867884404599	0.916042498883771
Merged-chr9-87255496-4	chr9	87255010	87256010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199316)	promoter-TSS (NM_199316)	22.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	5.56315803098001	5.95532428263179	5.75106432094174	5.5202550252916	5.41442055771962	5.42119634992205	-0.5912286321963	0.075672026487548	0.362222745209451
Merged-chr3-55115017-4	chr3	55114508	55115508	+	876.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	2842.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	4.39575782510717	4.57493675195646	4.50241439739888	4.79485890661284	4.50674430809058	4.72930458692803	0.447191224021677	0.29323197794704	0.690199330852636
Merged-chr10-127584731-2	chr10	127584231	127585231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 16 of 89)	exon (NM_008512, exon 16 of 89)	36417.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.46580334208546	3.28580937377259	3.9944503214128	3.30576521301274	3.16096739348609	3.65896861146636	-0.804734951250174	0.231040909052214	0.626813326547916
Merged-chr11-74547320-5	chr11	74546847	74547847	+	866.093323	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	42811.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.92276040147751	4.68640414805944	4.94520586426315	5.37287528390036	4.96389547645894	4.64887455001107	0.397595420792178	0.352227991037908	0.739888459678721
Merged-chr3-133542242-4	chr3	133541734	133542734	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	2156.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.36939378044884	5.08990257830279	5.04939846506516	5.0719693094067	5.29428042782129	5.11463579237828	-0.0268691026460431	0.942114054208495	0.987097394617189
Merged-chr8-126573862-2	chr8	126573362	126574362	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19574.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.29881395604475	3.24179452513878	3.35794102029739	3.24143806237738	3.17447796641334	3.63309748121604	0.228826719820915	0.717660215041385	0.927141395317297
Merged-chr11-77078481-4	chr11	77077972	77078972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030756)	promoter-TSS (NR_030756)	-35.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	7.30934100432498	7.54889089833795	7.23366081581624	7.38381674074762	7.5307289104169	7.25496355015536	0.0358901279795066	0.883426464340107	0.973362870329156
Merged-chr15-66801727-4	chr15	66801228	66802228	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	30101.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.36109258336786	5.24415902235619	4.84181134352198	4.87670797753301	4.94688256124707	4.34938769050401	-0.885250661925027	0.0512762887205732	0.288576086023771
Merged-chr14-37163337-2	chr14	37162841	37163841	+	689.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28019.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	3.0403710238861	3.19737792625184	3.02679601211092	3.03700573644281	2.87883005320167	3.15775034331159	-0.319112479977909	0.636446563723042	0.897158055063138
Merged-chr3-79099374-7	chr3	79098856	79099856	+	787.68573	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 3 of 23)	L1_Mus3|LINE|L1	45531.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.62677675282785	5.76309002491687	5.24154501253113	5.01983262566226	4.97656990990596	4.62326368070897	-1.36955710641779	0.000602746964974558	0.0121909016678666
Merged-chr1-157458538-4	chr1	157458095	157459095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356419)	promoter-TSS (NM_001356419)	27.0	NM_001356419	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	4.0696606414072	4.37891205998685	4.05917729140301	4.26397995444815	4.50889486881793	4.36579786640246	0.537439220556644	0.258728316688449	0.656251800083823
Merged-chr6-87521425-4	chr6	87520889	87521889	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	ORR1F|LTR|ERVL-MaLR	11870.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.76472870946319	4.60449270525305	4.13858158937045	4.38471715719373	4.5558386811423	4.36019292042237	-0.24444690080961	0.607923183687146	0.884816461163219
Merged-chr5-136136104-4	chr5	136135606	136136606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	-32.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	6.37054948813238	6.52957555870008	6.34811440533403	5.91663195189799	6.32523402340379	6.07302516430861	-0.490523439540917	0.0973505317569812	0.416021534994747
Merged-chr5-123277535-3	chr5	123277045	123278045	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49355.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	4.34956448389194	4.71272874069595	4.3617999469439	3.2926934013232	3.26490912739758	3.57215618581205	-4.35903791418104	3.45000604848402e-09	3.47961337311828e-07
Merged-chr10-30781222-4	chr10	30780725	30781725	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	22101.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.41962011524877	3.60211769379755	3.54042904352759	3.36839734984767	3.62912650310162	3.38804591278776	-0.172704207571653	0.770799121927541	0.94345245755247
Merged-chr11-69846513-4	chr11	69846007	69847007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023564)	promoter-TSS (NM_023564)	-110.0	NM_023564	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	6.73942136703187	6.88665781170796	6.84641958173378	6.52673326530713	6.51541220369227	6.28127847442317	-0.587104420211632	0.0258945905061285	0.190777145992026
Merged-chr1-39585633-3	chr1	39585126	39586126	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8279.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	5.33691444568387	5.62179297982769	5.44836323508094	5.13171244214766	5.36634115528869	5.64685235742811	-0.167684762892368	0.6413827498606	0.898968700104451
Merged-chr8-46143643-4	chr8	46143176	46144176	+	822.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19530.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	5.86472807459805	5.79057513781419	5.82547713446924	5.85837072692218	6.07796348045849	5.73025899493884	0.146383145054234	0.635851498170107	0.896829421389054
Merged-chr11-97684152-2	chr11	97683652	97684652	+	722.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1800.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	5.17761854740358	4.96621857844857	5.37461433138374	5.25401828222693	5.15880971228034	5.15890743251602	0.0391360109951349	0.914957662908687	0.980959026698783
Merged-chr11-26593564-5	chr11	26593044	26594044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 1 of 12)	CpG	376.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	7.32756655405221	7.56380733134813	7.44495294361565	7.51001069729351	7.52292744834466	7.50195142449997	0.0908643376917363	0.689084876611081	0.917289004157739
Merged-chr13-41601872-4	chr13	41601362	41602362	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4354.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	7.29035710221983	6.92601587388524	7.29227951948891	7.46179684415918	7.66941623245041	7.43640101409057	0.525206732679066	0.0365946912984187	0.235441975841555
Merged-chr3-59219546-4	chr3	59219032	59220032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 3 of 3)	intron (NM_001357010, intron 3 of 3)	-8650.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.92803425624301	6.25310263653669	5.97003449149392	6.15391326585929	6.40560293899777	5.98312341718848	0.237652307374104	0.444731966477432	0.804497096974959
Merged-chr10-94375927-1	chr10	94375427	94376427	+	557.0	f1_balb.idr	intron (NM_001359762, intron 1 of 4)	B4A|SINE|B4	63978.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.21731766773245	3.28003228496938	3.1915057240458	3.37588800238842	3.32713051413224	3.64227340883486	0.849573755985463	0.16918247274261	0.545865880490406
Merged-chr17-34397476-2	chr17	34396976	34397976	+	765.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	3.05517724022045	2.91572754302576	3.10201820574913	3.09448494939442	3.11445580943604	3.17375017068211	0.464063888117576	0.478445548596102	0.823834402333981
Merged-chr7-125596607-4	chr7	125596119	125597119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-6810.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.7900918820304	6.11572960127813	6.06394915564008	6.64349442747405	6.73434397404459	6.29859698531866	0.970418058743626	0.0012145194281643	0.0209663345598952
Merged-chr17-53690143-4	chr17	53689656	53690656	+	968.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-841.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	6.34198830927922	6.50854454627946	6.2816145051539	6.80077626184432	7.03206294510325	6.77225782956598	0.780833671212237	0.00357056886429218	0.0478961621892671
Merged-chr11-22814551-4	chr11	22814040	22815040	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45195.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.73493859473045	6.62009878728898	6.19059196000494	6.98285272135005	6.8940816472666	6.61372230560968	0.465507140941375	0.113347918514033	0.449737904902752
Merged-chr3-10342721-4	chr3	10342233	10343233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025512, intron 6 of 7)	RLTR20D|LTR|ERVK	-7077.0	NM_001010834	241877.0	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	3.70289587495354	3.74206292491921	3.64800450910673	3.73348681213461	3.53082211909156	3.43610802800162	-0.431693893747857	0.443323515593164	0.803766572656034
Merged-chr18-36194810-4	chr18	36194300	36195300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	2360.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	5.45472305429813	5.45487216120054	5.60620829106741	5.72079580655459	5.8330255481007	5.66855922536547	0.461555477485157	0.145662726663666	0.50882173592994
Merged-chr11-61868973-2	chr11	61868473	61869473	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13881.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	4.05296979943546	4.099366658253	4.49919767732193	3.83979008190314	3.96064452421323	3.86439440110662	-0.963419580363664	0.062544425760082	0.325160673454852
Merged-chr3-136669994-4	chr3	136669502	136670502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293622)	promoter-TSS (NM_001293622)	-64.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	8.17389592235668	8.46400721856479	7.88122599703083	8.04404787995655	8.02408722890505	7.80967213714063	-0.332766343819939	0.182032550971311	0.564649559348511
Merged-chr3-90248869-4	chr3	90248359	90249359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013901, intron 1 of 3)	intron (NM_013901, intron 1 of 3)	667.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	8.75491286604149	8.83255897695192	8.57641351644017	8.62502945993945	8.89746200971794	8.62627508966967	-0.00280998940439674	0.989593405456036	0.997611022725407
Merged-chr3-37139368-3	chr3	37138865	37139865	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13411.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	4.04316440151825	4.11408434674343	4.68223336439905	3.85128535409145	3.82716104364265	3.93456594148059	-1.25089833547664	0.0193887809082255	0.15816683155016
Merged-chr2-132094622-4	chr2	132094148	132095148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	intron (NM_001355431, intron 2 of 6)	50460.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	7.10736072995888	7.14563759727673	6.98070259346086	6.92129585274849	7.21648999924796	6.99734571201058	-0.0392692726031207	0.874639883945928	0.970754540400126
Merged-chr13-46727268-4	chr13	46726782	46727782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	CpG	567.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	8.45060120256457	8.83827940245171	8.6402256463227	8.30062948700292	8.5860309109036	8.67660846904995	-0.1716470079877	0.45975495074379	0.813919930991856
Merged-chr10-77033157-4	chr10	77032653	77033653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031196)	promoter-TSS (NM_031196)	-59.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	4.77036489589806	5.02445726480477	4.95855282615983	4.81774768012671	4.96110168297215	4.44676519902026	-0.328023646667116	0.43943478505971	0.801132525475962
Merged-chr4-102808441-4	chr4	102807942	102808942	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	MTD|LTR|ERVL-MaLR	48307.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	3.11111621650973	3.11007476435093	3.15440606170697	3.00559167048339	2.99514244771791	3.05165369827112	-0.49123740336851	0.451335153092357	0.808957790071745
Merged-chr8-107030209-4	chr8	107029658	107030658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1168.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	5.83540533213631	5.45845155178222	5.62368242238192	5.69580702685897	5.46532599143112	5.54570022845812	-0.148599956179137	0.657668022215538	0.904859102731141
Merged-chr5-32934831-1	chr5	32934331	32935331	+	576.0	f0_c57.idr	intron (NM_001360014, intron 24 of 40)	B2_Mm2|SINE|B2	71110.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	3.55853060434941	3.47052410002067	3.95416978409884	3.81149484233822	4.02254820009779	4.23867706250155	1.15491160236142	0.0416062802946249	0.255062467163282
Merged-chr11-8628922-4	chr11	8628424	8629424	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35611.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.57814603258226	5.29978764870554	5.62431077792515	5.32370995101628	5.25331297319634	5.07815738535565	-0.543076814322168	0.125758628954455	0.474428788996618
Merged-chr17-29396363-4	chr17	29395834	29396834	+	977.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35420.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.95378548748681	6.3829951867692	6.96945141973784	7.50560121950235	7.16238950582548	7.44330583779752	0.882914620593905	0.00238482298028255	0.035352993148646
Merged-chr6-65141123-3	chr6	65140634	65141634	+	927.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	3596.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.5830362772993	6.68783220419701	6.25893958662718	6.40619402570019	6.58544073815509	6.27706516653744	-0.153172324396995	0.596091374067197	0.8798867145239
Merged-chr11-54772187-2	chr11	54771687	54772687	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	15516.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.19941470369935	4.28387800346089	4.21084467664396	4.05086834848371	3.94072575122626	4.18802597735211	-0.508300139694274	0.28494343386617	0.682535905581946
Merged-chr5-36747201-2	chr5	36746701	36747701	+	628.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133724)	TTS (NM_133724)	1478.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.91959362009831	3.90944861328769	3.98021897347334	3.76409475325731	3.62183805102106	4.09345705842622	-0.330850049345095	0.53637008861911	0.853939276247874
Merged-chr11-77515039-4	chr11	77514542	77515542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026185)	promoter-TSS (NM_026185)	-75.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	5.3337611351741	5.37889958385456	5.495027822217	4.93550009001295	4.97945104598888	5.68332495062151	-0.333295199109765	0.410540676165568	0.783456460308807
Merged-chr8-84743313-3	chr8	84742791	84743791	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31078.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.51837363973617	3.24140535505611	3.391631926651	3.4114998275963	3.55802260736472	3.51804312723514	0.410886344595961	0.490057222164549	0.829980359087456
Merged-chr10-60738293-4	chr10	60737830	60738830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	B1_Mm|SINE|Alu	14452.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.33789372767973	5.17002521744781	5.45280833053672	5.75191404170085	5.57202699962692	5.65436386435435	0.655824033059506	0.0493159440686407	0.282282827055521
Merged-chr3-90508322-3	chr3	90507836	90508836	+	674.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293777, intron 1 of 5)	intron (NM_001293777, intron 1 of 5)	1162.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	3.60239345393817	3.41211605455661	3.3991645336806	3.62080348374293	3.5781167330478	3.52821286890398	0.358976091557157	0.531758794069357	0.851792887243639
Merged-chr15-78581562-4	chr15	78581036	78582036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	53.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	6.55768095859455	6.6421078561899	6.99851757461589	7.16490240873771	6.90477488921722	6.89333910280976	0.399349301315155	0.143889744099181	0.506355585832297
Merged-chr12-105013271-4	chr12	105012743	105013743	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	3.40597766890006	3.4605773203697	3.51045109952055	3.0970702095586	3.00300219227502	3.42373351604869	-1.15723814742472	0.0751833594162054	0.36108842541435
Merged-chr16-4381696-4	chr16	4381198	4382198	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	38800.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	5.9526218981295	6.40885612081351	6.3665247902412	6.31350674399131	6.45048130848035	6.0732173619128	0.0694235710344333	0.822758508368068	0.958153338614688
Merged-chr15-97138442-2	chr15	97137942	97138942	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	28802.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	2.15873325825305	2.12160853310842	2.25756377459273	1.93466247849534	1.95793489129917	2.07088780069268	-1.55951598489818	0.102290942526477	1
Merged-chr5-101972253-2	chr5	101971739	101972739	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	97682.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.59080190784381	4.48110949180806	4.68761283527302	4.95739187414831	4.82475783345301	4.93932446736177	0.747481793983708	0.0609417599404215	0.319826046113062
Merged-chr4-57950161-4	chr4	57949670	57950670	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6241.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.36041266239494	5.52985936475521	5.82013959942784	5.86929480930737	5.78806766775012	6.10024305353825	0.628987331504311	0.058930815115285	0.314201316162123
Merged-chr3-65529484-4	chr3	65528989	65529989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027955)	promoter-TSS (NR_027955)	-75.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	8.08037097180618	8.23509025693294	8.03160252758214	8.05660029729897	8.2123745299889	8.03626730559528	-0.019676769344697	0.926986473766178	0.983578869536024
Merged-chr9-90294203-3	chr9	90293702	90294702	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23433.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.64457268822509	3.47727243398931	3.63477660667225	3.31638329003952	3.44801685742609	3.75331731680667	-0.267452053241989	0.651108537002758	0.902735752871093
Merged-chr2-31770828-4	chr2	31770361	31771361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	10688.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	7.95490685980952	7.81154088382625	7.76308512590014	7.701109258024	8.02943160275067	7.84473835485243	0.0307232929670203	0.893117992218431	0.975200520944414
Merged-chr1-155475177-4	chr1	155474678	155475678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	51933.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	4.57998827280298	4.50352138393441	4.42111988360428	4.54859842857302	4.34307090428139	4.35408344928972	-0.225365286709421	0.604070754931797	0.882962431513982
Merged-chr19-45659739-4	chr19	45659179	45660179	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	CpG	514.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	7.96141237823356	8.07841101731656	7.93609123919031	8.15237244692157	7.82307533692599	8.1424462769403	0.0684919697031791	0.762339867436853	0.941552504399722
Merged-chr8-104109555-2	chr8	104109055	104110055	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-3682.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	5.76429608197481	5.6548627080028	6.01409773990903	5.79572028106409	5.74834050767247	5.96529095446352	0.0427694299952441	0.892342271749831	0.975087866203001
Merged-chr11-20553161-3	chr11	20552610	20553610	+	826.622253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	9857.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.97746021599491	5.96180502168387	5.92076270499498	6.14787872854898	6.23976031198673	5.80274200126832	0.233519156398405	0.443775294946644	0.803884349333946
Merged-chr11-113565269-2	chr11	113564769	113565769	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 1 of 9)	intron (NM_027216, intron 1 of 9)	546.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	3.6726161645468	3.32607155849932	3.48080892188355	3.40180808697933	3.310656639877	3.70594211094654	-0.0965010651507217	0.874659321972137	0.970754540400126
Merged-chr5-122811883-4	chr5	122811387	122812387	+	808.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 5 of 16)	B3|SINE|B2	9455.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	2.50090116482539	2.66020308655929	2.73185606990796	2.55471591028043	2.52121686107179	2.80435193103825	-0.0255382885463654	0.973726901099668	1
Merged-chr5-146288177-4	chr5	146287752	146288752	+	979.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359991, intron 6 of 12)	intron (NM_001359991, intron 6 of 12)	57002.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	4.61445256157324	4.76018676976745	4.79166617031745	4.47107197751923	4.4913034594077	4.5447637204934	-0.533632075165613	0.196604380216541	0.58452343120227
Merged-chr5-101981289-1	chr5	101980789	101981789	+	700.0	f1_balb.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	88632.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.36334439774084	3.21952424733026	3.45102897631416	3.40191523740365	3.1829892717447	3.62316144273348	0.240889732152219	0.699782485823564	0.92073487393803
Merged-chr18-65803588-2	chr18	65803088	65804088	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025468, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	3010.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	3.97573008901694	4.2467621810786	4.07609708641492	3.90024747532881	3.94150611716971	4.36148705223296	-0.0932289427159262	0.855717723261076	0.966244542232428
Merged-chr7-64048541-4	chr7	64048034	64049034	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-105301.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	6.26584121178894	6.5309483501092	6.54346354457539	6.30867807028516	6.12367153758272	5.9009598366195	-0.531838098873191	0.0731420375182654	0.35544928500291
Merged-chr11-95838886-5	chr11	95838441	95839441	+	897.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-3354.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	5.52872323393848	5.61393054534991	6.17559727627584	6.40424320187024	6.23622225873157	6.27486027751034	0.89182645052556	0.00712416568356616	0.0791608243658251
Merged-chr13-62466804-4	chr13	62466322	62467322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136496)	promoter-TSS (NM_001136496)	-10.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	6.6876203153116	6.53677839079231	6.36823515122199	6.73917697539931	6.7448886472001	6.69651582602813	0.288701513740418	0.272751846775762	0.669951714189667
Merged-chr1-165655250-4	chr1	165654748	165655748	+	764.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-20707.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.79218078035032	2.94414753039023	3.70097536337359	3.22619033968868	2.91831600978873	3.22650473059904	-0.318757377287407	0.683714216059762	0.915479407206029
Merged-chr9-88708748-2	chr9	88708248	88709248	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	PB1D10|SINE|Alu	10839.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	5.99427201814145	5.73230983461194	5.48835730204311	5.49544723363213	5.7584563805854	5.58196554646243	-0.260987413504133	0.443649289654695	0.803884349333946
Merged-chr1-162004401-4	chr1	162003959	162004959	+	892.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040562)	promoter-TSS (NR_040562)	-510.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	4.67336782026823	4.46166275820695	4.77281435809236	5.749696723563	5.83440523231295	5.65965318422537	2.33751447598322	2.46307076280506e-10	2.99630397706847e-08
Merged-chr10-19596203-2	chr10	19595703	19596703	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4254.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.51494392955975	5.50421475005875	5.29591218196408	5.60432403586802	5.68169170754209	5.71140797086696	0.402830858356931	0.215776341021445	0.609157826684956
Merged-chr9-65533081-4	chr9	65532536	65533536	+	997.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47051.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.65761428427141	6.36583841856508	6.55692687311938	6.50252474912318	6.59594987371914	6.37875205073535	-0.0457850733865322	0.866904253875335	0.969143747903519
Merged-chr1-156859390-2	chr1	156858896	156859896	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028333, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	20373.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	5.5824142118576	5.48341466580677	5.44870960297683	5.07828119065364	5.11897906278942	5.20042171760048	-0.755605891656078	0.0269758305745635	0.19557151161254
Merged-chr14-120362715-4	chr14	120362215	120363215	+	845.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	56263.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.55492955803091	6.37030432478437	6.63466107061611	6.45143699467742	6.63223195328859	6.13901406768447	-0.132432916963149	0.650517551793546	0.902615790875857
Merged-chr19-44554754-4	chr19	44554252	44555252	+	803.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026061, intron 2 of 4)	intron (NM_026061, intron 2 of 4)	690.0	NM_001347447	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	5.72197588460389	6.11009408872544	6.21566348409576	6.21175734663652	6.19253401515233	6.33316375146713	0.36981676690078	0.228205857000576	0.623147576440797
Merged-chr10-112141341-2	chr10	112140841	112141841	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22280.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	2.66619254693423	2.76487028562026	2.84868656447306	2.82139667223629	2.79362054365646	3.14804908248012	0.824918271986714	0.258380566776218	0.655887312008161
Merged-chr19-57452934-4	chr19	57452431	57453431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028115)	promoter-TSS (NM_028115)	25.0	NM_028115	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	5.09591693632337	5.00190104800374	5.02085632950017	5.03950464717632	4.70621783048556	4.74606753512261	-0.442970541599909	0.254491980888293	0.651501976609947
Merged-chr4-72165865-4	chr4	72165392	72166392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	35001.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	5.35722757263741	5.4212198341384	5.61006012023946	5.6583832254718	5.8651768816956	5.87266435569507	0.639856859326478	0.0474364350071704	0.275885292799094
Merged-chr15-58890243-2	chr15	58889743	58890743	+	844.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175151)	TTS (NM_175151)	1014.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	7.20512076209272	7.2518700586735	7.05411586611	7.23925411615872	7.4679718858591	7.1383199712153	0.17878497061805	0.467362750213585	0.817936383851132
Merged-chr1-156420973-7	chr1	156420449	156421449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346967)	promoter-TSS (NM_001346967)	-34.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	5.06289951971577	5.03860596588748	5.45003268749015	5.41384670548617	5.40986246437612	5.24176805423262	0.360583834018654	0.321402284171755	0.714837665357421
Merged-chr11-69100037-4	chr11	69099532	69100532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	-120.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	7.8116620167582	7.59499020237729	7.0210574376197	7.49309043799287	7.75278329007975	6.98973656429323	-0.0968035207494675	0.764848643838083	0.942093382415686
Merged-chr10-95795698-3	chr10	95795208	95796208	+	935.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144955.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	2.44930306972387	2.54717899723916	2.67348584351831	2.50048130488866	2.57710259162421	2.62408638573375	0.0663275144596785	0.931838323977494	1
Merged-chr9-57580108-3	chr9	57579613	57580613	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 4 of 8)	intron (NM_022813, intron 4 of 8)	-9339.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	2.85575946990125	2.60339360602167	3.01753540635336	3.07892850227973	2.81198163598602	3.03222435818676	0.700597706011641	0.345912387890114	0.734364391783451
Merged-chr5-122550639-4	chr5	122550149	122551149	+	842.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358917, exon 19 of 19)	3' UTR (NM_001358917, exon 19 of 19)	-48424.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	6.67057370520257	6.85894515983023	6.36556499780308	6.35662063962047	6.37554033425509	6.53735639107037	-0.382396462258721	0.177919894205681	0.55892688546374
Merged-chr19-3907506-1	chr19	3907006	3908006	+	1000.0	f0_balb.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	-373.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	8.55403192989304	8.78076669521515	8.30893233020275	8.69701921967612	9.13083893660192	8.64210045620028	0.386476984080034	0.124487099550324	0.472098928006171
Merged-chr11-118149675-3	chr11	118149160	118150160	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20441.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	5.65643293695184	5.88357166672987	6.07844791530615	5.17394728243832	4.94845665068972	5.6980769660231	-1.09703860825375	0.00454798898428106	0.0572745599998982
Merged-chr15-74934284-4	chr15	74933767	74934767	+	895.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20784.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.4275541585282	4.68125574671015	4.78345852832085	6.57021233321599	6.76887823525923	6.33478721406479	3.82339428924342	5.91503707827821e-24	8.34200686795549e-21
Merged-chr2-109278838-4	chr2	109278329	109279329	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	-539.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	4.61500421840115	4.64247624630351	4.49878524188359	4.73761059923728	4.65503213067323	4.7308144384692	0.269037035176533	0.508675164904111	0.839881796236556
Merged-chr18-32408042-4	chr18	32407552	32408552	+	896.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29768.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.75042666975714	4.72623442554735	4.99855702780014	5.08237445995737	5.01813643512836	4.80621339803542	0.353964078948848	0.365643220351185	0.75071889665134
Merged-chr19-12433267-4	chr19	12432772	12433772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5367.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	5.72860700827012	5.60715491415798	5.70703552920254	5.46739122893979	5.48980613441264	5.69138161292507	-0.251942930620356	0.431704134096061	0.797034816427545
Merged-chr2-164865110-2	chr2	164864610	164865610	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31F_MM|LTR|ERVK	-7402.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	4.09762311219197	4.02077699151766	4.4547702603955	4.18580758400749	4.08761494885376	4.36022755796812	0.0423234790938698	0.931070368162442	0.984765710287914
Merged-chr6-72937483-1	chr6	72936983	72937983	+	810.0	f1_balb.idr	Intergenic	Intergenic	20749.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	3.76771236469093	3.56713564491502	3.57672755308735	4.20539692197833	4.21673978797341	3.71074700401898	1.34968859532055	0.0163064443352103	0.140735050331312
Merged-chr10-127064337-3	chr10	127063850	127064850	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009870, exon 2 of 8)	exon (NM_009870, exon 2 of 8)	815.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	5.98578955883442	6.10672715625454	5.85055057841826	6.04063986658728	5.6973184503074	5.78322529999324	-0.255214789813587	0.41343583557575	0.785038429214008
Merged-chr11-63790420-4	chr11	63789945	63790945	+	889.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131839.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.6847217244015	4.68871155711302	4.50578823307506	5.43325478695173	5.32976176091038	5.17156042583303	1.47495180740358	0.000139604363290765	0.00374475514688503
Merged-chr16-55968844-2	chr16	55968344	55969344	+	650.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	URR1A|DNA|hAT-Charlie	2569.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	3.12948606920787	3.14173677796745	3.19337049405391	3.19598675871106	3.33776891067093	3.58476103133718	0.910229613046679	0.150599129725652	0.517489620222838
Merged-chr2-29965451-4	chr2	29964950	29965950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309460)	promoter-TSS (NM_001309460)	-110.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	7.127718259579	7.26209183488164	7.24160004456572	7.2627170734515	7.47295722071815	7.03215949731797	0.102397314496492	0.683720546738611	0.915479407206029
Merged-chr14-15067925-2	chr14	15067425	15068425	+	880.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247110.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.10340677749809	3.08189080898899	2.90560441517667	3.18315995033268	3.33613671143929	3.22325376726466	0.932497970441527	0.160757946338664	0.533494234902646
Merged-chr4-126227644-4	chr4	126227165	126228165	+	738.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24955.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	6.31753775136656	6.39759923709641	6.48080790094379	6.6337704765208	6.80083783185542	6.84219309359911	0.58295363527775	0.0258659561048471	0.190667476574426
Merged-chr4-118180117-4	chr4	118179598	118180598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172382)	promoter-TSS (NM_172382)	-55.0	NM_001161823	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	6.35246403557256	6.73866198698021	6.74746244372994	6.90614760338682	7.05355016478665	6.69497155618297	0.43621176067628	0.118966863023208	0.461031953027688
Merged-chr2-60882745-1	chr2	60882245	60883245	+	540.0	f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1307.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.43094326385658	4.40571990324613	4.73088482711825	4.6433311463727	4.61403891019763	4.60366384576324	0.248495624006331	0.558317969886947	0.864610587604775
Merged-chr11-71888707-3	chr11	71888218	71889218	+	852.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	51404.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	2.85195766552443	2.84651294523371	3.29855153358149	3.02416569302936	2.85626226770373	3.36862738961159	0.3710963276791	0.613709114393795	0.887300906025089
Merged-chr18-53249748-4	chr18	53249200	53250200	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4038.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.98347116700035	7.85760628110728	7.95493209119395	8.02708926890261	8.20959590097543	7.84345163693352	0.156892651320313	0.485763239652319	0.827570845088965
Merged-chr10-79916977-4	chr10	79916470	79917470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177994)	promoter-TSS (NM_177994)	-1.0	NM_001359010	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	6.76758330583993	6.61008429625632	6.94623772689095	7.12776193903751	6.87885395275968	7.04382862389902	0.375931753579796	0.147409492995207	0.512306786949509
Merged-chr14-17713245-4	chr14	17712749	17713749	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	52289.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.1859201829253	4.06338044563299	3.84333357550283	3.96703846091119	3.83232496479401	3.91420802482345	-0.432420480800293	0.396162083471641	0.773389948259227
Merged-chr7-139387941-2	chr7	139387441	139388441	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1168.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	6.16889038170641	6.45374052639624	6.22996781449593	6.49256833889172	6.59940923319396	6.44773818661592	0.365669144944838	0.186588655867195	0.571279717312345
Merged-chr10-96374777-4	chr10	96374270	96375270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	148563.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	8.00293418328306	8.13060652241645	7.80848911993306	7.85688727920915	8.28795458890985	7.7126960935193	-0.00740003427321719	0.977185600936913	0.994771164142869
Merged-chr1-131911070-4	chr1	131910571	131911571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	CpG	613.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	8.85529661246623	8.75342323227032	8.49115344684211	8.72327546986549	8.68784918360088	8.69093053255287	-0.0182581578067074	0.931084275306759	0.984767901918406
Merged-chr6-5291014-3	chr6	5290522	5291522	+	654.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	7351.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.83741653689434	3.67294332180618	3.88591273842964	3.66918180891984	3.47609562059758	3.59852206630106	-0.746449782637525	0.176254656624219	0.556471161767709
Merged-chr6-16884109-4	chr6	16883611	16884611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	14330.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	6.43104127105136	6.4940324535245	6.74038044112315	6.75739596897309	6.92788478655669	6.57101499242803	0.344817004933577	0.208180599339571	0.599041414336639
Merged-chr8-14888061-2	chr8	14887561	14888561	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012000)	promoter-TSS (NM_012000)	-475.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.93611225315375	7.11392278583396	6.76457132212788	6.99681294714824	6.89320198810739	6.77557953441672	-0.091016069113001	0.724039992833012	0.929178878081464
Merged-chr19-24271793-7	chr19	24271233	24272233	+	983.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 3 of 4)	intron (NM_008044, intron 3 of 4)	8853.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.1811924117134	4.43598887490916	4.1473522617316	4.23745080097407	4.15019749787518	3.96255665485984	-0.387240616215253	0.42446592223449	0.792697196836987
Merged-chr18-67394279-2	chr18	67393779	67394779	+	782.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	B4|SINE|B4	3548.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	2.86296166328059	2.48144377391053	2.41001488133217	2.61491623378563	2.61524234927857	2.87152650259409	0.536631603159677	0.525897758215647	1
Merged-chr6-134043798-4	chr6	134043302	134044302	+	793.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	8102.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.79667886032425	4.77821927728534	5.00202628530154	5.3542751199818	5.45914097526143	5.50225382187915	1.21826134655365	0.000713143925497897	0.0138546065264602
Merged-chr3-115766362-4	chr3	115765855	115766855	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51300.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.68703745693813	6.10160310011042	6.22041097314809	5.70354529823245	5.53953546162846	5.58692020378412	-0.728114964714465	0.0288767612979304	0.203879041322058
Merged-chr12-52001779-4	chr12	52001276	52002276	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4731.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	3.61818639401733	3.7399517214654	3.84320670549715	3.83632289845929	3.95863172042505	3.96071831346172	0.602954778412149	0.247312059104782	0.644240868260931
Merged-chr2-119251032-4	chr2	119250529	119251529	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13669.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	2.9351041664592	2.8257245695347	2.94078149417289	2.75791050111331	2.7430731964355	3.06976295324172	-0.205121015410734	0.774638388726964	0.944493464665915
Merged-chr10-99261521-1	chr10	99261021	99262021	+	1000.0	f0_c57.idr	Intergenic	CpG	-1710.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.1117206384421	8.60511242734588	8.20030209234	8.27624672841404	8.62840734191518	8.1325162928866	0.0571538346317995	0.826063925294863	0.959063571361885
Merged-chr7-97080364-3	chr7	97079800	97080800	+	830.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1451.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.0751962171143	5.06567365922224	5.22487532795768	5.27117991063791	5.53493515182329	5.60525354528265	0.716687857766835	0.0416936821604546	0.255335828748591
Merged-chr15-43477634-4	chr15	43477132	43478132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	403.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	7.40140062554578	7.80162373086692	7.45237064903526	7.37731931567743	7.63661303576166	7.33405711737039	-0.155348535990383	0.542005797676857	0.857034750433211
Merged-chr14-87044485-4	chr14	87043965	87044965	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 4 of 27)	intron (NM_019670, intron 4 of 27)	96759.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.06720783048976	3.03829127968104	2.76804717360098	2.8852541069801	2.84741931645983	3.25002485473012	0.160314923552774	0.827511565308921	0.959467071709035
Merged-chr10-13498259-2	chr10	13497759	13498759	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2769.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	3.42608700847076	3.23128322922996	3.57940092538194	3.25920374684307	3.31057424073018	3.2731063787555	-0.515705769959886	0.4035674317463	0.778882003719199
Merged-chr11-115135074-4	chr11	115134553	115135553	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-1061.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	5.69003724477648	5.62319976136468	5.64770773063864	5.61604878186117	5.59874964082366	5.7358233661432	-0.0148727783883626	0.962085642023711	0.990739203008446
Merged-chr4-103313779-4	chr4	103313284	103314284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025909)	promoter-TSS (NM_025909)	-62.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	6.45619504437877	6.4412500290603	6.53207850650001	6.68757562575209	6.18020671615996	6.64075976531401	0.0632584910086433	0.828770211116802	0.959888529364535
Merged-chr13-105047496-4	chr13	105046977	105047977	+	917.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7453.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	3.65315815247616	3.41904639158359	3.68381815333934	3.26393148561675	2.96500015499432	3.14858217716347	-1.92068017021495	0.00383898418934114	0.0503994755613996
Merged-chr3-87340498-2	chr3	87340003	87341003	+	931.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-17378.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.60451159268039	5.73965161410299	5.83810894570324	5.80934400786477	5.71460736506306	5.99008390965865	0.197273568352381	0.529673041844762	0.851027930520951
Merged-chr8-84065229-2	chr8	84064729	84065729	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1607.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	3.62785790974929	3.59400834360555	3.87508674406616	3.66839453339302	3.87621797792931	4.16530560673993	0.688808072715888	0.213934879874138	0.607069313663926
Merged-chr13-22028875-4	chr13	22028374	22029374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6769.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	5.08052943416399	5.18791495152108	4.73628258863368	4.78598294414519	5.21244796017006	4.76201346141728	-0.157760095666407	0.708042514664727	0.923606271223831
Merged-chr3-103872752-4	chr3	103872242	103873242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	12465.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	5.34527749714055	5.01528719478836	5.18893580804891	5.2791062607548	5.82389261521474	5.47397828324441	0.714732619323168	0.0563746837307068	0.306062477775414
Merged-chr10-91181792-4	chr10	91181312	91182312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10193.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	7.60243976848072	7.52698734545169	7.49205215624364	7.73933477478704	7.89434062884027	7.82316089372134	0.402975837042544	0.0651130748912835	0.332770809074109
Merged-chr10-80053510-4	chr10	80053002	80054002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	14.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	8.43745275564233	8.17087239944956	8.15238191949744	8.25085308437674	8.55246666809238	8.09553931691285	0.081279915904411	0.733891642658752	0.932325051544019
Merged-chr1-105805782-4	chr1	105805337	105806337	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	Lx8|LINE|L1	25114.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	3.98125365929669	3.92871460313651	4.16462148020283	4.09597447022795	3.72751302232303	4.1880911576313	-0.0408385245917148	0.937563487160252	0.986057836872162
Merged-chr1-43478038-3	chr1	43477522	43478522	+	796.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	32271.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.86390986820443	4.02421670167728	3.79979879385864	3.99115374168993	3.79445478261174	3.97110808257623	0.0358865330685785	0.944419352187135	0.987719484242428
Merged-chr3-27269743-2	chr3	27269243	27270243	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-47334.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.82360397607339	4.58421218323039	4.69855230404382	5.18273317775417	5.05850420306754	4.63795926224714	0.633005126046154	0.128602466921389	0.479725368402892
Merged-chr18-61095725-4	chr18	61095243	61096243	+	904.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-9829.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	4.69267086260961	4.66457733851276	4.72875562680125	4.65823171307591	4.62129810497356	4.75609091119354	-0.0449592891440047	0.91067061122407	0.979933152968869
Merged-chr1-37466599-3	chr1	37466119	37467119	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	21986.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	3.64351255990691	3.59728859093323	3.5292258099459	3.44903132502577	3.40421131415713	3.65243334918197	-0.342924099123099	0.548192688353337	0.85958743025568
Merged-chr5-18005612-2	chr5	18005112	18006112	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	RMER17A2|LTR|ERVK	43042.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	4.15042327142846	4.00692961350854	3.82923733219789	4.24133649366277	4.22573172848865	4.15726242217337	0.568202936373155	0.246518780879424	0.643625187305151
Merged-chr2-160019826-2	chr2	160019326	160020326	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	3173.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.10128972640111	6.08347244068765	6.35220512167566	6.08130952415079	5.90874265017767	6.09543337074348	-0.258299869811521	0.379439276652728	0.761896589033286
Merged-chr9-83576107-4	chr9	83575610	83576610	+	898.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	27772.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.06746455881857	5.88965334148759	5.37544663700018	5.30984657083932	5.10365964714588	4.97982555678599	-1.35221118428336	0.000424816595686375	0.00923410117394772
Merged-chr12-12247264-4	chr12	12246801	12247801	+	735.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14838.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.05134841766795	5.17846562128492	5.30173661865333	5.61849924141277	5.74636147244948	5.36543641762919	0.842240775689945	0.0160415262884174	0.13909798743147
Merged-chr2-146855841-4	chr2	146855354	146856354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033298)	promoter-TSS (NM_001033298)	-35.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	6.11126888978762	6.27914774608032	6.12751786175553	5.59140255179389	5.59453248879345	5.37100232437496	-1.14808420612575	0.000231010683048849	0.00562703071285966
Merged-chr6-38641426-4	chr6	38640955	38641955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4216.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	4.57527471441281	4.29222894521939	4.74324142302569	4.53479769242027	4.26565407536999	4.45774986306619	-0.306836867090986	0.499675408203021	0.834687375989398
Merged-chr4-57952528-4	chr4	57952058	57953058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3853.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	7.28151995852478	7.12464927040135	7.05208409482785	7.45427304960327	7.77176284516317	7.48233901524671	0.631193132661868	0.0101398418104755	0.101371615687378
Merged-chr11-103418735-4	chr11	103418230	103419230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6066.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	7.02613519479979	6.3349431299846	6.81320323929906	7.46158581444559	7.40483791140101	6.97533781383041	0.828725230056106	0.00696144261900922	0.0778140404946962
Merged-chr1-107447409-2	chr1	107446909	107447909	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027548, intron 5 of 7)	intron (NM_027548, intron 5 of 7)	24720.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	3.29489815993816	3.38519865765648	3.14569886134438	3.20882450102365	3.09625957901525	3.54353327398031	0.025682037533658	0.968685947340078	0.992817369127793
Merged-chr1-138136612-4	chr1	138136112	138137112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	38514.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.39377456052036	6.21638622448112	5.80678837989876	5.89626293672103	5.98881374941099	6.25903210544543	-0.2107870372015	0.515842804886062	0.843966720312586
Merged-chr16-20424982-4	chr16	20424500	20425500	+	919.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	1394.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	7.2466948995559	7.51919815941408	7.14865089694518	7.44799052225589	7.88820007223403	7.2568769722007	0.36643913595611	0.190654634585087	0.577134837486971
Merged-chr14-30620400-4	chr14	30619896	30620896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5812.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	7.06643228431926	6.97541536969007	6.83837881270879	6.7928922395157	6.95295622218816	6.82119064304326	-0.164500882908832	0.509358906097454	0.84026772146894
Merged-chr15-6337688-4	chr15	6337187	6338187	+	915.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37898.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.83448623692854	5.871739023592	5.51560927668777	5.58801962490551	5.59713955802582	5.60815160780004	-0.302733260977476	0.348176691989573	0.736087868121677
Merged-chr8-45409227-2	chr8	45408727	45409727	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357317, intron 1 of 5)	intron (NM_001357317, intron 1 of 5)	1153.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	3.42449257779959	3.63454166757583	3.59525510642361	3.46869964875629	3.76444961704119	3.91172417360585	0.583587586663783	0.311718838841542	0.706686133077051
Merged-chr1-172643808-4	chr1	172643284	172644284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-10810.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	5.38023736875103	5.0806844812216	4.97076319693111	5.05625817939864	5.13674671175133	4.92209692962962	-0.240828769660955	0.527695068448023	0.850108008834301
Merged-chr19-60818851-4	chr19	60818359	60819359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7304.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	7.26816537884937	7.36334778503791	7.1241220420415	7.13642604489964	7.43826226736215	7.32528605166471	0.071494913276359	0.769334064681062	0.943113227015368
Merged-chr4-137593907-7	chr4	137593406	137594406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347227)	promoter-TSS (NM_001347227)	-266.0	NM_001347227	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	8.55255221221496	8.88711296304255	8.42951410391553	8.50770067518028	8.61921870473552	8.06040627904937	-0.301052253337147	0.242222567872866	0.639326946903326
Merged-chr14-60805798-2	chr14	60805298	60806298	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 7 of 18)	L2|LINE|L2	21232.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	2.94121893174265	2.83201590881066	3.1272656582653	3.13011250265717	2.81007687375925	2.96634228139491	0.0286551793126683	0.967523403231471	0.992568985241011
Merged-chr2-117299893-4	chr2	117299386	117300386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	42991.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	7.35882825254422	7.0791810141007	7.26463755609361	7.52600600790653	7.69320848789022	7.26289757142284	0.411443704360604	0.103584706816794	0.429151378451094
Merged-chr13-95685921-3	chr13	95685430	95686430	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 14 of 35)	intron (NM_027711, intron 14 of 35)	-10990.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	2.87739063779091	2.98262056668345	2.93703461347311	2.54338162080157	2.65984975048619	2.83088021209865	-1.35741242812788	0.0736094129016992	0.356554431757166
Merged-chr11-106920815-4	chr11	106920202	106921202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025481)	promoter-TSS (NM_025481)	13.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	7.3145823238734	7.1252654081372	7.12725627705498	7.17505251246051	6.74440551482313	6.97451422710712	-0.335366516791315	0.197433614764697	0.585399145399312
Merged-chr2-59184281-4	chr2	59183785	59184785	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23435.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	7.92322113087333	7.90934844963851	7.63254605292414	7.90762975605283	8.3446292070794	7.65017336513105	0.253121253023072	0.349429524627471	0.737499871486835
Merged-chr19-32224539-4	chr19	32224040	32225040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-13527.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	8.02156968064543	8.45541250291074	7.76364775434774	7.50046674362329	7.66219143635942	7.5557287611456	-0.778456848894754	0.00326759004202064	0.0449033248912393
Merged-chr10-60368064-4	chr10	60367546	60368546	+	793.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159572, intron 5 of 6)	intron (NM_001159572, intron 5 of 6)	21195.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	5.26603839305119	4.87888792480321	5.13542251405013	4.98308665919507	5.189906056819	5.35409592788491	0.160466377973075	0.674492762842373	0.911852710156386
Merged-chr5-3355590-4	chr5	3355108	3356108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	11715.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.58697372317747	7.5554515087975	7.32161142668206	7.29590307743891	7.31941521522003	7.31038562252758	-0.281790690003364	0.223255001435868	0.618076123752226
Merged-chr8-72136391-3	chr8	72135896	72136896	+	858.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	intron (NM_001001491, intron 1 of 7)	1104.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	5.66966041815367	5.87474101758775	5.62686928153506	5.47331968020687	4.98683127282622	5.40142457022492	-0.839294430676136	0.0188089681156258	0.155266529763651
Merged-chr11-114727342-4	chr11	114726833	114727833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034878)	promoter-TSS (NM_001034878)	-79.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	4.46401260671421	4.5281660161064	4.24635777872226	4.22570342835336	4.21296854615156	3.90107196056108	-0.788853956211305	0.104210418324009	0.43056460042227
Merged-chr7-127017369-4	chr7	127016858	127017858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-6.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	5.67590390732152	5.8332274923985	6.17172375193198	5.85066390518367	6.08600792947429	6.30714725788729	0.33038240930786	0.314380612536151	0.708710692372488
Merged-chr8-117328905-3	chr8	117328401	117329401	+	865.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-20269.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.81525072510734	3.628748018358	3.66892296566971	3.52068097055531	3.22265355505638	3.68763515604952	-0.807591565692976	0.178006696692916	0.559020435786437
Merged-chr2-166179686-2	chr2	166179186	166180186	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-24003.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.53540572315467	5.66284790840583	5.8773874071109	5.38996036558004	5.59661259076803	5.69719320897023	-0.235020551394142	0.479834205271341	0.824391932626821
Merged-chr11-53301870-2	chr11	53301370	53302370	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1391.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	6.15023092523291	6.52116049178011	6.51663176635839	5.89596160309152	6.2261018680633	6.20578553618294	-0.474813327713628	0.11808121210621	0.458976105803405
Merged-chr4-124695563-1	chr4	124695063	124696063	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-2009.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	4.04809940970787	4.01672558327964	3.93262334207317	3.46359198601993	3.46469830506814	3.58518642826196	-1.72918608285489	0.00179310636222574	0.0284083766542421
Merged-chr2-155979481-4	chr2	155978982	155979982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130000, intron 19 of 32)	intron (NM_001130000, intron 19 of 32)	22924.0	NM_177217	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	7.18873959923729	7.24758077522782	6.84646102884877	6.74749152647712	6.76063017133497	6.55404161049267	-0.642985344675772	0.0150896869339061	0.133289030827649
Merged-chr9-108343577-4	chr9	108343109	108344109	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4222.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	5.231565948288	4.65334361410573	5.31449179583939	5.36720228590118	4.96026798420333	5.51612074613283	0.409323409902673	0.338681479114667	0.728588578553954
Merged-chr15-33083219-4	chr15	33082729	33083729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018755)	promoter-TSS (NM_018755)	100.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	7.25851355765227	7.62046981660882	7.22655958075273	7.12498185578665	7.48207783972401	7.02377138187561	-0.2235461745647	0.412648437228543	0.784551818322662
Merged-chr18-39639378-2	chr18	39638878	39639878	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134119.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.77000420915449	3.24534419291649	3.56161154385656	3.5588344831103	3.56337482776549	3.83418498908884	0.37470591534523	0.539513763678882	0.855947170442397
Merged-chr4-119125713-4	chr4	119125224	119126224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	16979.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	6.53883588963633	6.4720487834053	6.46729762939486	7.35713225484818	7.32848114233759	7.1012165979703	1.19905675430136	1.53282358450229e-06	7.86817919921446e-05
Merged-chr2-3475920-3	chr2	3475366	3476366	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-880.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	7.0223785985263	7.54829987293291	7.21099089354862	7.23179408060327	7.56955126131359	7.2921587294237	0.13995977978938	0.606341743889368	0.884045625119091
Merged-chr8-83858081-3	chr8	83857548	83858548	+	683.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-42050.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	2.26622845832842	2.04049682298944	2.21946392800365	2.62378286656082	2.40095799989734	2.49877943550917	2.38950404754055	0.0132623469420073	1
Merged-chr7-141475949-2	chr7	141475449	141476449	+	946.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	-431.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	6.65029429450988	7.01788919999489	6.9784301135463	6.94658190992103	7.0349799261136	6.83785189864273	0.087848697113052	0.737523605412688	0.933775317218453
Merged-chr12-4195413-4	chr12	4194954	4195954	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 6 of 21)	intron (NM_001159537, intron 6 of 21)	38511.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.0769611422186	5.0666587194068	5.56151398655731	4.66083674753903	4.65894818213925	5.02456219136535	-0.997545938455928	0.0158373926453794	0.13798929499861
Merged-chr7-131411365-2	chr7	131410865	131411865	+	622.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175115)	promoter-TSS (NM_175115)	764.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	4.2375138983044	4.17362012353934	4.13895094565281	4.06975157892064	4.12583871091792	4.29676010212473	-0.0689298865916091	0.883101090743111	0.973347392063704
Merged-chr9-13554947-4	chr9	13554392	13555392	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65097.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.86236978008686	3.61890019142546	3.94293798131704	3.93949673317227	3.97751604746594	3.64679169906003	0.19109894133521	0.726065145397003	0.929743505822386
Merged-chr8-3646016-4	chr8	3645519	3646519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9751.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	2.85177775965178	2.80126359881113	2.85194737852191	2.5698797285844	2.63363231840599	2.92413038918181	-0.644567821366294	0.391008143579929	0.770112153342334
Merged-chr6-97315458-2	chr6	97314953	97315953	+	643.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-62673.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.39652090041404	2.77340710535861	3.25396707838345	3.13960620907773	3.05023903948494	3.53514801751584	0.348427903635438	0.642918130169674	0.899548231805501
Merged-chr9-118608718-5	chr9	118608106	118609106	+	989.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	1897.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.44910186420147	8.05004265618525	7.78250797779485	7.57285615194084	7.92037384699696	7.75404631626946	-0.0387681748968694	0.88382063982367	0.973446302281334
Merged-chr2-22799802-4	chr2	22799297	22800297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	25470.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	7.36229275647971	7.3107424799661	7.20903906327621	7.13983273774636	7.39489856143997	7.02019849344943	-0.139396479036561	0.573759402673562	0.870292198441646
Merged-chr13-3538668-4	chr13	3538112	3539112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	537.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	7.54221161563931	7.632467996039	7.70616259813481	7.69560740323833	7.50062019403517	7.96733300932932	0.147164839912007	0.544106942636941	0.857551302506722
Merged-chr17-10599214-3	chr17	10598718	10599718	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	143002.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.31352724629564	3.48333428648412	3.19733884307487	3.20003348693281	3.13817447386019	3.26989598163046	-0.585212185195291	0.352835363312329	0.740329823404675
Merged-chr9-78429846-3	chr9	78429332	78430332	+	641.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173386)	TTS (NM_173386)	13405.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	5.33581260085988	5.90878349586872	5.78942317587919	5.86398567873049	5.99200106024974	6.12228800527129	0.520266119307595	0.126043562000285	0.474777397325473
Merged-chr7-43669466-7	chr7	43668948	43669948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2583.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	7.7388600133372	7.60744406768482	7.61174800382967	8.17713877268449	8.26213830821685	7.94550718445227	0.692233297028604	0.00196337898453849	0.0305248203560312
Merged-chr12-40545748-2	chr12	40545248	40546248	+	903.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	99695.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.24328946951575	4.87885734101298	4.62101567353506	4.98451571460194	4.79596416025054	4.9698099180639	-0.0802325241503547	0.847955223103118	0.964318271116593
Merged-chr15-60854384-4	chr15	60853886	60854886	+	938.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29306.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	2.88909115778417	2.62391855911812	2.63629402568556	2.8924378503976	2.92123368966543	2.96338449833453	1.00809188291805	0.17602727045922	0.556183038586686
Merged-chr5-76176649-3	chr5	76176155	76177155	+	804.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-7225.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	2.65609254493995	2.51897239161106	2.64051909275056	2.45720213997557	2.11909968959934	2.324103694497	-2.06059822542087	0.0309369432840367	1
Merged-chr6-125587289-3	chr6	125586780	125587780	+	627.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	34332.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	2.7515864690853	2.37340129048617	2.55480002343221	2.70832373875517	2.66879637051673	2.81765928054899	0.878205235256454	0.276912764073325	1
Merged-chr5-139397469-2	chr5	139396969	139397969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	7565.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.03837287461869	6.89957440741815	7.02816007436221	6.63585758126799	6.68523276420963	6.74670114955459	-0.466271104893487	0.0592767002889342	0.315364173762253
Merged-chr2-71598771-7	chr2	71598210	71599210	+	868.9442140000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-51956.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	3.46307638574233	3.15179686226859	3.22840166569053	3.71821543660747	4.02139809014086	3.76499751181518	2.0282702241779	0.00123357244744406	0.021229611321475
Merged-chr11-98945204-2	chr11	98944704	98945704	+	679.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	MIRb|SINE|MIR	5493.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.25910126091652	4.20138346504188	4.40266998247013	4.77299398213314	4.43595430755134	4.51295626122077	0.758973897560239	0.0888524996097604	0.39578366100262
Merged-chr19-11964402-2	chr19	11963902	11964902	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1442.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	4.12664697303545	4.18991739228975	4.32030458713216	4.52467176697432	4.4473626698306	4.6331953815808	0.845180542246044	0.0572281924921233	0.308529444141803
Merged-chr14-30715162-2	chr14	30714659	30715659	+	987.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	-8.0	NM_001166531	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	6.62463266194822	6.34214536728216	5.71395826145697	6.03131468570861	5.83341995445152	5.562291549786	-0.790256142482918	0.0328850554858762	0.220972276255252
Merged-chr8-11008993-4	chr8	11008477	11009477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081212)	promoter-TSS (NM_001081212)	-547.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	8.18666420891538	7.98382259419731	7.81895905648604	7.80399230095261	7.22040839946052	7.43958438896266	-0.716602668254085	0.00690870387714203	0.0773408753833288
Merged-chr3-79161310-4	chr3	79160803	79161803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15428.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.25660101514687	7.389670696665	6.74708367802343	6.76409975810612	6.8222539680089	6.48147975135373	-0.711199906660605	0.0152287208224157	0.134073602742171
Merged-chr19-47224954-4	chr19	47224476	47225476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-3867.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	5.1968689998347	5.30890531140559	5.63545364286978	5.81190053906335	5.40894028117161	5.77210865329739	0.545242356888834	0.127951332042991	0.478368729180139
Merged-chr2-5655322-3	chr2	5654810	5655810	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	MTC|LTR|ERVL-MaLR	20736.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.16895983409593	4.04486804973727	3.99825954489685	3.57254900545939	3.68449340648322	3.97147042290318	-1.03851420219203	0.0512010569202168	0.288445331362044
Merged-chr5-139470034-2	chr5	139469509	139470509	+	574.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9475.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	3.51277963486772	3.44813655981556	3.57499052331888	3.34817148216307	3.27532237926377	3.64437619280713	-0.327670128287478	0.583042557767017	0.873907285988058
Merged-chr3-88410059-4	chr3	88409570	88410570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178696)	TTS (NM_178696)	327.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	8.63907520692793	9.0000554502984	8.50782664637338	8.69355978975612	8.90196560223503	8.35707423404645	-0.0842202532491255	0.741402244304173	0.934810423981747
Merged-chr16-33895895-5	chr16	33895359	33896359	+	737.713318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	66194.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.4204964918716	5.36670060124013	5.30024893528636	5.48338978945061	5.28160957094127	5.39508037149475	0.0357472974843491	0.915800048349911	0.981200822249461
Merged-chr9-63568501-2	chr9	63568001	63569001	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	33992.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	4.03379802680007	3.64105969554182	3.76478110795524	4.07609562801486	3.91161886035633	3.72687453163756	0.281268941527806	0.607980201000492	0.884838153491064
Merged-chr15-25834577-3	chr15	25834055	25835055	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8743.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	3.5987558673928	3.45672196273996	3.61663830377135	3.70484860088706	3.47924165521868	3.68671193652614	0.232347772706268	0.680321974870886	0.914217125833247
Merged-chr2-119338045-4	chr2	119337596	119338596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11899.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	4.81390418655295	4.71192621321765	4.53998004840764	4.38670325122893	4.32099504330493	4.68722398634795	-0.580419347419873	0.181934559500695	0.564608863504393
Merged-chr1-4963411-3	chr1	4962896	4963896	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177795, intron 2 of 5)	MTD|LTR|ERVL-MaLR	55338.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	3.25676412203534	3.25439698125305	3.31104931470412	3.32026728377985	3.18545521487059	3.2692155514356	-0.0641803648882725	0.916548720299901	0.981312252061916
Merged-chr4-150010387-2	chr4	150009888	150010888	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1365.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.06416099355514	3.81577354652607	3.85130618080882	3.56980205799059	3.70623019143881	4.01589670948734	-0.46955241853182	0.391459838989297	0.770492969429247
Merged-chr1-85342384-1	chr1	85341884	85342884	+	540.0	f1_balb.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-71818.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.03902410239877	3.14965503439727	3.16977224430094	2.63196137638493	2.63640749044257	3.44756212823736	-0.464484326386309	0.76164153210722	0.941258867861232
Merged-chr15-66846120-4	chr15	66845613	66846613	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-14284.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.57800481022644	6.59422081297044	6.8337485660232	6.38363197297352	6.72732550363307	6.2752103285415	-0.281687198569251	0.329590419307627	0.721408142613596
Merged-chr15-98880638-2	chr15	98880138	98881138	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026967, intron 1 of 7)	intron (NM_026967, intron 1 of 7)	776.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	4.21543690658411	4.35705145887913	4.51707515532941	4.18465556124295	4.43610439706408	4.42018432472846	-0.0219764874670488	0.961605012158814	0.990648883228567
Merged-chr10-80703911-2	chr10	80703411	80704411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027829, exon 5 of 10)	exon (NM_027829, exon 5 of 10)	1218.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	1.8503147047734	1.82138074513764	2.05661861046079	1.72352723201794	1.64662641064215	2.00204355163553	-1.00664110725153	0.344386195603905	1
Merged-chr8-71288077-2	chr8	71287577	71288577	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	B1F2|SINE|Alu	15363.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	5.79692648925446	6.05279489766753	6.29229007200066	5.9752192149965	6.432339799422	6.23576643114852	0.304885872357023	0.342439544058732	0.731311405759821
Merged-chr19-4305785-4	chr19	4305222	4306222	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130863, intron 1 of 21)	CpG	500.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.76470906614264	6.1185571453699	6.42431895210749	6.13921751886291	6.01770929474411	6.20690001524729	-0.00162356676843387	0.995996542857063	0.998961028701257
Merged-chr11-115473819-4	chr11	115473299	115474299	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1868.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	6.4716270109379	6.31471639147831	6.91903936031499	6.90741230733006	6.79868283883325	6.68545905132962	0.347994220069229	0.233703675271763	0.629973286640303
Merged-chr10-39449306-4	chr10	39448806	39449806	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	79507.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.31307123757425	5.03390156452141	5.30234812967863	4.6559881643487	4.58760198857812	5.08825649914305	-0.951885994191754	0.0192006676343039	0.157248932334169
Merged-chr13-120300232-3	chr13	120299730	120300730	+	942.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-162.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	4.91813795668914	4.81660671969238	4.82867055001538	4.98416084065993	4.70952857326422	5.22964613914884	0.267465361544929	0.507704909643614	0.839371314171726
Merged-chr15-58797464-4	chr15	58796971	58797971	+	929.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25956.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.61193861134039	4.98954601058265	4.75254491295715	5.40964711714007	5.0989297571077	5.08457354331103	0.872995271838143	0.028673088834188	0.203032114349001
Merged-chr1-34837703-2	chr1	34837203	34838203	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	(TA)n|Simple_repeat|Simple_repeat	5347.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.03172380740452	6.04663554587771	5.73090779301122	5.82719444764346	6.08266230873581	5.87230243387984	-0.0258157361712323	0.933833056427277	0.985608038854863
Merged-chr2-91081098-7	chr2	91080589	91081589	+	951.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10774.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	7.17145831207889	7.0445100228703	6.7942917621049	7.05566803273434	7.14371458732736	6.73915359103219	-0.029909198037341	0.911470477129318	0.980106685891579
Merged-chr17-46711437-4	chr17	46710943	46711943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145488)	promoter-TSS (NM_145488)	-20.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	5.78486076473756	5.42139767562488	6.18712746110245	5.65228621285943	5.28097033171806	5.83288907277629	-0.413554131461396	0.283215264182409	0.681173833410735
Merged-chr2-131208486-2	chr2	131207986	131208986	+	869.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1874.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	4.85044495196304	5.18060050269392	5.50978916392064	4.95681637176053	4.92917601880719	5.38496382527357	-0.209070957249043	0.615007249106776	0.887689480704909
Merged-chr17-13760684-3	chr17	13760182	13761182	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010806, exon 1 of 33)	exon (NM_010806, exon 1 of 33)	141.0	NM_010806	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	2.84146475140139	2.79501215076831	2.78401041338469	3.06415726139885	2.626242334611	2.92038474034157	0.361421419561378	0.626616252442495	0.892916235446326
Merged-chr5-136086360-7	chr5	136085871	136086871	+	958.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	2455.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	6.9119699989179	6.94193940920434	6.80439389442407	7.32014361310911	7.54328466623317	7.09363174443821	0.679391674403358	0.00787440826778372	0.0850816469478961
Merged-chr4-149171696-4	chr4	149171176	149172176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4971.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	6.69676418147825	6.25095901775107	6.92022691556208	6.42776696179823	6.52636290825324	6.8855919449488	-0.0359564691361393	0.909319951698001	0.979433534093496
Merged-chr4-115643298-4	chr4	115642836	115643836	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 1 of 11)	intron (NM_007823, intron 1 of 11)	4369.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	5.27854199192078	5.86318419393967	5.44530057277106	5.76889142382362	5.74582076940501	5.44688535087827	0.197727011384419	0.587051684490439	0.875769926947203
Merged-chr5-33335457-4	chr5	33334943	33335943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021500)	promoter-TSS (NM_021500)	-129.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	7.2781905477537	7.25543755819142	7.28125500655124	7.28210139711509	7.18059574134958	7.22240762852689	-0.0645770126806553	0.777263980445698	0.945065044932719
Merged-chr7-19360546-4	chr7	19360049	19361049	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-667.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	5.06119246129273	4.73555863005027	5.31988782097126	5.1228136352235	5.23025473231133	5.32396870891511	0.36863670039429	0.34471599106177	0.733279141917758
Merged-chr14-30596012-7	chr14	30595541	30596541	+	882.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	14269.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.25638347776532	5.29192641019404	5.8606592990889	5.98505000756011	6.17929791959153	6.097656632127	1.10033917294065	0.00143278976173761	0.0238796350681075
Merged-chr6-122820632-5	chr6	122820135	122821135	+	872.64447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021899, exon 1 of 11)	5' UTR (NM_021899, exon 1 of 11)	451.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	7.00997522351882	7.25306725419211	6.77856683439057	7.31870172578512	7.27724628760143	7.07293994566941	0.289826655890194	0.270204632522179	0.667203280387572
Merged-chr9-20877106-2	chr9	20876606	20877606	+	821.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145154, intron 2 of 5)	intron (NM_145154, intron 2 of 5)	2604.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	3.07199826510753	2.81204481159098	2.8698136835558	2.99026922409495	2.7324182961447	3.17723073283245	0.231772643669127	0.750679668878554	0.937588367655538
Merged-chr4-119663198-4	chr4	119662700	119663700	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-4255.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	3.30685226763235	3.26304039349254	3.27037245819457	2.86526705502972	2.7723589657966	2.99309465085312	-1.99579761401545	0.00488636395484447	0.0602704672331306
Merged-chr4-66792298-3	chr4	66791829	66792829	+	922.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35222.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.19033255224284	4.28873753182858	4.30474851132995	3.98264360731985	3.75523114724241	4.05672927147	-0.976156941031476	0.0478323370573753	0.277141779950566
Merged-chr4-132384029-2	chr4	132383529	132384529	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175306, intron 3 of 13)	intron (NM_175306, intron 3 of 13)	-30343.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	3.12070774385803	2.98431126230104	3.13433846218756	3.07148120775529	3.00107859561726	2.96891375941744	-0.290952839025413	0.660606378594657	0.906017078417015
Merged-chr9-88720372-5	chr9	88719805	88720805	+	903.0399779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128601)	promoter-TSS (NM_001128601)	-507.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	5.60796339038709	5.8071318824603	5.85234938468921	5.63104021762113	5.86339023245398	5.81631309963218	0.0374509143386547	0.905417142181626	0.978338695252951
Merged-chr11-22848820-3	chr11	22848324	22849324	+	753.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	10911.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.2116281271866	4.1093111415121	4.15813130603379	4.3230446758661	4.26727142635812	4.56593236666962	0.599440459681603	0.194123196175901	0.581321633463051
Merged-chr1-162740569-4	chr1	162740075	162741075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081290)	promoter-TSS (NM_001081290)	-19.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	8.16537068388897	8.69533482112038	8.32251086192322	8.13582364536792	8.37111147166225	8.23485231388305	-0.230855844917759	0.342055700226252	0.731142095278512
Merged-chr6-37842958-4	chr6	37842480	37843480	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27831.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	3.27204718125607	3.41245257861592	3.213232972825	3.12768435871895	3.24627592246108	3.45002757500662	-0.119660853977927	0.849472735013262	0.964686793473289
Merged-chr10-80932383-4	chr10	80931895	80932895	+	960.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008655)	TTS (NM_008655)	2304.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	5.29550823632016	5.09847332914911	5.31229876895757	5.67754359712793	5.47795988330599	5.52513254116222	0.639920748779998	0.0600349532012356	0.317208326861033
Merged-chr5-123884620-4	chr5	123884129	123885129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4609.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	4.74092292756275	4.1743571933785	4.05330260060463	4.65458180443169	4.2266532418352	4.22937293767895	0.050450378991447	0.923714058762233	0.982733195971172
Merged-chr10-30677636-2	chr10	30677136	30678136	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-21769.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.03966801994113	5.67501799408289	6.14686046093218	6.12033641101457	6.36131398780431	6.05575870073398	0.400158383316542	0.205430329282846	0.596047563330878
Merged-chr9-90238579-2	chr9	90238079	90239079	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32190.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	8.14498175640983	8.48039560819258	7.99657732519761	8.32617746210326	8.42778935749143	8.17551271521496	0.122228527892443	0.608068228151877	0.884872787702852
Merged-chr11-74494103-2	chr11	74493603	74494603	+	769.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96055.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	6.90998366981723	7.33726577208325	7.21749169107376	7.36645156991842	7.52304998377673	7.22718019472972	0.322274089161578	0.211952098781462	0.604420229358776
Merged-chr4-136126510-1	chr4	136126010	136127010	+	581.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-17312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.34785089672125	3.14838292983406	3.13925648422245	3.42303291696896	3.55046992229919	3.5024896789181	1.07986277838862	0.0808697373586886	0.376279657000602
Merged-chr1-36003981-4	chr1	36003467	36004467	+	768.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64433.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.35557550504731	3.44528136816304	3.44101878868194	3.46746484537939	3.17997954129677	3.28615023475492	-0.38944903892438	0.523141248130324	0.848000018982857
Merged-chr13-113490694-4	chr13	113490198	113491198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12146.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.32908309323403	5.94106959309731	6.27068613856651	6.59965079188485	6.28975308781155	5.84168475390736	0.167570457834939	0.619578838937603	0.889853069353322
Merged-chr3-135423342-4	chr3	135422837	135423837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	96.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	8.62391614082876	8.61285637038292	8.36198370971524	8.46869023784949	8.56954930392887	8.20652363285427	-0.156452223102405	0.485407439002784	0.827455998208303
Merged-chr7-19316538-4	chr7	19316026	19317026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6481.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	7.4030364348829	7.28922858437555	6.664077397581	7.09659263631154	7.57846549851664	6.77626234560751	0.057486453583683	0.864042361466551	0.968269312109804
Merged-chr10-126904160-1	chr10	126903660	126904660	+	540.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2789.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	2.31139915151423	2.37368817343685	2.48947942524647	2.16478952815874	2.37931225610058	2.37430474067452	-0.520532220339733	0.543480987986722	1
Merged-chr4-141147540-4	chr4	141147042	141148042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-380.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	7.95452049045782	8.19634924414278	7.97593605224558	7.94601676684423	8.22525222331852	7.84014447508354	-0.0394688265950236	0.866442075979204	0.969017637877387
Merged-chr2-26907361-4	chr2	26906895	26907895	+	868.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	3247.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	3.465260689462	3.43640672634542	3.82068121582728	3.48829372383079	3.81027870885567	3.58798715583344	0.224671398219297	0.703271149869889	0.922108924938678
Merged-chr10-8876359-2	chr10	8875856	8876856	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	9714.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.66301708190105	6.52442911644091	6.4729629789999	6.60351562052569	6.35583101460471	6.21299608412191	-0.247614312328657	0.375250288722511	0.758624025253248
Merged-chr14-51095728-6	chr14	51095147	51096147	+	890.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007447)	promoter-TSS (NM_007447)	-353.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	3.78611115325957	4.09642186433214	3.89303977748956	3.6903975784084	3.85639576301601	3.64483696343826	-0.61434821923097	0.256615937212108	0.653682511929703
Merged-chr11-50107405-6	chr11	50106839	50107839	+	859.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-24021.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	6.05291010462471	5.92605603781433	6.11999419163579	6.00772039985573	6.22893266496582	6.26151517464484	0.238916007457899	0.412047466561584	0.784254069324243
Merged-chr1-170967704-4	chr1	170967202	170968202	+	889.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077189, intron 3 of 7)	intron (NM_001077189, intron 3 of 7)	8369.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	3.76421244855042	3.73059937616411	3.75982174100726	3.38563194960419	3.21425939817043	3.62692989247523	-1.25919725754762	0.0343740323160943	0.227010608217436
Merged-chr2-35462620-6	chr2	35462072	35463072	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1123.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.15667908086832	6.1903167039545	6.14941192315121	5.74475507318847	5.70794741155201	5.68273878833484	-0.796055371123487	0.0065613070326606	0.0746015963339291
Merged-chr15-81142355-4	chr15	81141848	81142848	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-37301.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.60482934439391	3.43885459794862	3.51278560470778	3.53638691879127	3.10143442634953	3.53004493274396	-0.454053685501791	0.469479095899866	0.818977178978635
Merged-chr10-39267155-4	chr10	39266632	39267632	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102667.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.83900914190835	4.96542170110123	4.70449309786259	4.45920757621855	4.22206426749843	4.69248983638587	-0.936139930372434	0.0316392708839025	0.215615734158424
Merged-chr12-58538493-4	chr12	58537998	58538998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269240.0	NM_025809	66864.0	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	3.85990248540137	3.71323424326334	4.22492609591195	3.86249058288499	3.58347157860398	3.94147731639373	-0.449764566165266	0.420487460004307	0.789742624867499
Merged-chr1-170845899-4	chr1	170845393	170846393	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 4 of 15)	RMER4B|LTR|ERVK	21878.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	7.20877893487318	7.37519936020922	7.21135846712387	7.05063632331917	7.70866245173137	7.32712140118425	0.193376187117254	0.482980946636085	0.825908436418655
Merged-chr2-71212524-2	chr2	71212024	71213024	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347173, intron 1 of 17)	intron (NM_001347173, intron 1 of 17)	578.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	4.76260739053118	4.9296021956106	4.82778524813884	4.87742535634456	4.80210797123562	4.89316242471849	0.0246347960387432	0.949057445990125	0.988169196639905
Merged-chr2-71581052-7	chr2	71580566	71581566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-34312.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	5.91175127940206	5.8452271954993	5.83072007170389	6.03166610348895	6.2051846751161	5.70433312580468	0.258369689441167	0.412963779569112	0.784725209448945
Merged-chr1-16505108-4	chr1	16504600	16505600	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347044, intron 4 of 13)	RMER1C|Other|Other	14015.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	3.65731533328446	3.5602885256755	3.46810846173428	3.29464252121147	2.96494376217608	3.42954474431321	-1.31529818514834	0.0456286132051254	0.269783674239471
Merged-chr9-32516129-2	chr9	32515629	32516629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	25323.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.91524069721439	6.75716803153938	6.88399555392665	6.75517740118002	6.59050382022547	6.91432978896712	-0.158521853528422	0.540396480840001	0.85632302227606
Merged-chr4-15265699-4	chr4	15265218	15266218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181401)	promoter-TSS (NM_181401)	-102.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	7.04420557000755	7.16706449944797	7.12188846723729	6.88645038321462	6.74639409636366	6.81052939348133	-0.457048908653279	0.0591444370241506	0.314914715685166
Merged-chr7-99818483-2	chr7	99817956	99818956	+	827.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016720, intron 2 of 2)	MMVL30-int|LTR|ERV1	9961.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	3.02997428820109	3.170738452557	3.03384766179318	3.25239863600942	3.17804294330397	3.69691450640675	1.25157893418777	0.0636275504248044	0.328758148022052
Merged-chr1-84284597-4	chr1	84284108	84285108	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003948)	promoter-TSS (NM_001003948)	37.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.63018242813783	4.68176121341057	4.93628735690388	4.47669363967699	4.06986884099659	4.64652212629764	-0.841097941955017	0.0704339143482924	0.347772676542411
Merged-chr13-55696207-3	chr13	55695716	55696716	+	928.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181278, intron 1 of 1)	B4A|SINE|B4	3092.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	3.15061757816865	2.93401376638125	3.30034308181937	3.22830223588541	3.2646081611895	3.62613019269842	1.01338607788177	0.12818768336736	0.478822084648559
Merged-chr10-60745105-4	chr10	60744583	60745583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	7699.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.52938606470253	5.42408654282799	5.51719091118081	5.16866754485447	5.6518171549326	5.4038970903758	-0.105911168041958	0.764139187274287	0.941958626520407
Merged-chr10-96334822-4	chr10	96334341	96335341	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108634.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.22421944080004	5.69039459921709	5.3826247418661	4.99063536591707	5.10963178819957	5.08811781056276	-0.781874080984649	0.0346917311110205	0.228354525930369
Merged-chr13-73770241-2	chr13	73769741	73770741	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	6544.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	3.13908245362136	3.25374623788152	3.16739716842951	3.4387348953991	3.08493337769511	3.29830421104716	0.369594441612726	0.564558585624194	0.86648819110595
Merged-chr7-31108905-2	chr7	31108405	31109405	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	2092.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	2.76568500501428	2.83163592269701	3.13071799990249	3.05431599928975	2.89106807385804	3.14670551925328	0.556080667891666	0.431948719033448	0.797162418904554
Merged-chr17-64600860-7	chr17	64600293	64601293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008549)	promoter-TSS (NM_008549)	-856.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.78944476593607	7.84695645710837	7.70322092162288	7.70980072972961	7.9358802079905	7.64932041001382	-0.0088366514134837	0.968807260702467	0.992866574393222
Merged-chr19-5741341-2	chr19	5740841	5741841	+	664.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	437.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	2.37112184983367	2.37069924764694	2.55135036422687	2.38253781866287	2.41175485692011	2.43712500608617	-0.121029051998903	0.88082318328828	1
Merged-chr12-77100615-3	chr12	77100121	77101121	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137483.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	2.65870134599133	2.61360901732127	2.88109877275833	2.58585757061931	2.44637903697188	2.45927348302958	-1.28499225582414	0.108834342816326	1
Merged-chr2-135474362-4	chr2	135473869	135474869	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019677, exon 33 of 33)	3' UTR (NM_019677, exon 33 of 33)	108851.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	3.92765165846144	3.6320918255819	3.81488365914876	3.74742122273464	3.81968539744813	4.20407408607066	0.417343588041444	0.445530295957784	0.805194667777499
Merged-chr9-123923269-4	chr9	123922793	123923793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	45399.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	8.46466564822596	8.72746388404261	8.23721497919044	8.48001261736951	8.75716914420046	8.27956954593658	0.0404169092657381	0.871463043127026	0.970222087171093
Merged-chr19-61004407-3	chr19	61003927	61004927	+	712.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	114678.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	2.56256625887105	2.36223928981646	2.54577823774257	2.21534400623251	2.28970169688259	2.49518501151146	-1.01521148184049	0.235948430050152	1
Merged-chr1-13342825-3	chr1	13342346	13343346	+	595.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	29583.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.00835683792282	2.79086250121628	2.77939192548517	2.81522168056805	2.68425248950698	2.91357066939893	-0.329171438793323	0.651042770017417	0.902735752871093
Merged-chr3-89773947-1	chr3	89773447	89774447	+	1000.0	f0_balb.idr	promoter-TSS (NR_130957)	promoter-TSS (NR_130957)	338.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	8.50084943433064	8.25498135606951	8.2170400479417	8.67508944222614	8.56035027019785	8.33638374111956	0.280294860179804	0.210993458502787	0.603332337700291
Merged-chr5-24030785-4	chr5	24030280	24031280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053090)	promoter-TSS (NM_053090)	-90.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.4496871419075	6.45826159073927	6.56585371106087	6.44236848388329	6.23355265698856	6.3166231143085	-0.256907919148569	0.341015343795449	0.730659982236591
Merged-chr10-96332974-4	chr10	96332475	96333475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	106768.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	8.37654109696658	8.62229097669711	8.24684653339613	8.39783166748427	8.70250218194866	8.27649156458788	0.0676562827101332	0.776787361628827	0.944892922631445
Merged-chr6-134461345-4	chr6	134460819	134461819	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 17 of 22)	intron (NM_008514, intron 17 of 22)	46891.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.17993659191074	7.39618078291194	6.95352729577418	5.38561145334078	5.4379297849487	5.54787946549595	-2.93155017480438	3.04681630050549e-22	3.05445169557181e-19
Merged-chr2-121008403-4	chr2	121007896	121008896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-12.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	4.78391382429274	4.4559268625283	4.85930093215368	4.7234980444921	4.41999235337372	4.74245624017639	-0.180178236584345	0.678853382594086	0.913553914280182
Merged-chr5-139252234-4	chr5	139251722	139252722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-102.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	6.76820693582765	6.2138344407925	6.14056381014835	6.74464493262433	6.37063107453606	6.44979449946114	0.186529359544415	0.563313495441912	0.865926383742263
Merged-chr9-77921117-4	chr9	77920619	77921619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	3754.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	2.94296007643444	2.83386697713382	2.9648016665898	3.30885093176034	3.07887278872434	3.21628418451616	1.33129914464693	0.0492582990391325	0.28212311030067
Merged-chr10-19933818-4	chr10	19933249	19934249	+	998.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-777.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.68065106449167	5.67408682470998	5.59129974947063	5.11066597121351	5.0416276075206	5.51703496662978	-0.834167830067426	0.0180345159126835	0.150982593828611
Merged-chr13-54819697-4	chr13	54819283	54820283	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30378.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	4.71528036926703	4.47628029337684	4.50919483853396	4.56082217845643	4.97891131640988	4.74175539816691	0.483864575694225	0.258600880834495	0.656162466533417
Merged-chr9-123872388-2	chr9	123871888	123872888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-10359.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	3.55547840655865	3.43822514773606	3.23099785695607	3.74797039912486	3.90859205323049	4.01229305221943	1.61878965734997	0.00743601421464897	0.0816274235847641
Merged-chr2-35475086-4	chr2	35474576	35475576	+	893.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13627.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.36340714704253	4.6750714978456	4.64755519521382	4.15516200504649	4.84025038174737	5.02614360507567	0.363748528713166	0.463547139359357	0.815985749049342
Merged-chr9-90228269-2	chr9	90227769	90228769	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 4 of 12)	ORR1F|LTR|ERVL-MaLR	42500.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.61529484427861	4.52435869294177	5.06204452832288	4.9866807488388	4.63695438066117	5.18641378009274	0.454207973788155	0.305588431108503	0.701697220401146
Merged-chr13-51737146-3	chr13	51736643	51737643	+	574.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	MIRb|SINE|MIR	56604.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.78191078221456	3.55662654254508	3.53790528001192	3.48550232215435	3.24040065122931	3.32216773129053	-1.05829603619979	0.0784765076434666	0.369927849275789
Merged-chr11-103102180-4	chr11	103101661	103102661	+	910.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152813)	promoter-TSS (NM_152813)	473.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	6.53004960905607	7.11945464629938	6.39138194755837	6.00274172491588	5.92076973543937	5.94304992478028	-1.27757504588599	7.9983033797279e-05	0.00234835154417925
Merged-chr9-118716481-1	chr9	118715981	118716981	+	629.0	f0_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	4789.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.99779039825624	3.54193774697361	4.03645266670019	3.77302811142427	3.91819894987439	4.10404706766409	0.187925014601471	0.735077893753086	0.932617455907478
Merged-chr10-119240161-4	chr10	119239664	119240664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-109.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	7.53151936406123	7.67722288929309	7.46412847052693	7.55167560016202	7.47675159337254	7.51086746340222	-0.0766612920916025	0.732861920674968	0.931916782998743
Merged-chr8-46850711-3	chr8	46850217	46851217	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110972.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.12755265255846	6.39001604963515	6.51891645895135	6.46496730103928	6.86514643292882	6.62842903320282	0.517043841626657	0.0747946537199661	0.360011196085552
Merged-chr8-72487184-4	chr8	72486681	72487681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	5433.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	4.32464816749908	4.43609950395809	5.16313691027552	4.29087397419244	4.34327132017073	5.05390538890033	-0.197726785702077	0.715131460017565	0.926295780806461
Merged-chr4-134533759-1	chr4	134533259	134534259	+	561.0	f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	intron (NM_029759, intron 1 of 6)	1337.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	3.17928800286705	3.06890710788794	3.0512355029568	3.37766923684173	3.36127451061839	3.41660775298837	1.16760473139197	0.0644850261376126	0.331036297278656
Merged-chr10-79961243-3	chr10	79960659	79961659	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175450, intron 2 of 9)	intron (NM_175450, intron 2 of 9)	1007.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	4.12732762786549	4.02743697897252	4.44738261012097	4.21639885186352	4.61582751877981	4.05929198996051	0.338594249383794	0.506972017481818	0.838700670629006
Merged-chr19-55702936-4	chr19	55702428	55703428	+	922.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045318)	promoter-TSS (NR_045318)	-724.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.01873457611245	5.83668354492834	6.24025518199336	5.47443965839763	5.59052007164345	5.70675899325599	-0.797120885180134	0.0131855453851146	0.121954277426162
Merged-chr2-91140506-2	chr2	91140006	91141006	+	964.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	22362.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	2.78893402402881	2.70994528274462	3.00720327813161	2.75202838552672	2.49512395998407	3.13337955043474	-0.0996572658008546	0.901136218278844	0.977088121586474
Merged-chr3-79177323-4	chr3	79176790	79177790	+	963.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31415.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.83922841368986	6.88069282375774	6.98279232233756	6.8974860979326	7.31158347688611	7.05406075658944	0.31712193103416	0.220161010545381	0.614507907782981
Merged-chr19-42090296-4	chr19	42089771	42090771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145501)	promoter-TSS (NM_145501)	-164.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	8.27229022178555	8.10629280143868	7.94113102980216	8.19334686643036	8.27888355892241	7.98933639684071	0.0650530564348461	0.774537292403056	0.944477929413368
Merged-chr17-5770458-4	chr17	5769939	5770939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28218.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.44440009384381	6.53549690696807	6.54432200092002	6.57062429238263	6.72434435403658	6.29993175606713	0.0789398366523745	0.775507930316463	0.944682505926692
Merged-chr16-50759577-1	chr16	50759077	50760077	+	566.0	f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-23832.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	4.40278490355566	4.67271076708651	4.68718728589063	4.6622536648863	4.38175496673887	4.55451790008585	-0.14106183971273	0.745006040972303	0.936032341688524
Merged-chr7-80865044-4	chr7	80864583	80865583	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009553, intron 2 of 2)	intron (NM_009553, intron 2 of 2)	2975.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	3.20686470826027	3.06357244716951	3.36688808503126	3.0066844057121	3.10951265790655	3.4366332447128	-0.0947500022699527	0.886892001665814	0.973794308941933
Merged-chr9-31446125-3	chr9	31445629	31446629	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144936, intron 1 of 5)	intron (NM_144936, intron 1 of 5)	18109.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	3.59370471195713	3.75549609004395	3.60030679900016	3.13678491588475	3.04010277742241	3.09172237974316	-2.42764305615109	0.000272630593562168	0.00643592149273011
Merged-chr1-43936562-2	chr1	43936062	43937062	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2568.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	5.24102000795401	5.02214308805842	4.94558751764018	5.06749006948697	5.27832832667274	5.11957870348028	0.169792804606162	0.64704952007232	0.901159400806897
Merged-chr4-63590634-4	chr4	63590120	63591120	+	915.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	10144.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	5.260957150391	5.41531316350171	5.20781482652567	5.16897733065956	5.19802955338515	5.33529003831014	-0.146833151910536	0.674169502257578	0.911841916826811
Merged-chr6-94962027-2	chr6	94961527	94962527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18193.0	NR_040761	78773.0	Mm.67065	NR_040761	ENSMUSG00000108187	4930511E03Rik	-	RIKEN cDNA 4930511E03 gene	ncRNA	2.50071587869032	2.43197333093137	2.70038568407838	2.91731947153317	2.76911779435714	3.12522561555991	2.26120177074853	0.00566959096427973	0.066915648929899
Merged-chr1-34472746-4	chr1	34472230	34473230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 12 of 14)	intron (NM_011206, intron 12 of 14)	12984.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	6.35528467158371	6.58698856433105	6.73686990385714	6.71154499242188	6.7811568726981	6.92375536806373	0.383560734849996	0.153949793499667	0.523087753015605
Merged-chr3-96567298-4	chr3	96566798	96567798	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040409)	promoter-TSS (NR_040409)	-497.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.83482063947975	4.66671321288348	5.17996679026728	4.84841762507671	4.79355461190154	4.98767698341861	-0.0556439466611221	0.891556862149694	0.974819081679788
Merged-chr15-58746754-2	chr15	58746254	58747254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76673.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.51812595669369	6.57448829392158	6.3873414854842	6.74720625251251	6.75265990440774	6.48492986797767	0.278168296641231	0.297607384856945	0.69435047328333
Merged-chr11-54214842-2	chr11	54214342	54215342	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	2.2167100984994	2.08250405336892	2.3171537743775	2.10394347833809	2.1368229469295	2.06173517390229	-0.751641237290723	0.406558454756439	1
Merged-chr2-167659312-4	chr2	167658828	167659828	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	2216.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	5.76474625072123	5.49647877079212	5.53358067177842	5.42922315718447	5.66596257433723	5.31793679579167	-0.216106145435403	0.528628160667584	0.850585575598857
Merged-chr13-23423908-4	chr13	23423420	23424420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-54.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	6.06901879070125	5.9941816667471	6.00827366117624	6.08467501170803	6.00672772713609	6.11338064422394	0.0688706661285777	0.809494397975077	0.954749848816598
Merged-chr12-84243307-4	chr12	84242791	84243791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24410.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.28929475484437	4.83399953014397	3.9349170620979	4.15579515222329	4.06405349177431	4.26488664523303	-0.67627446641445	0.210440371341668	0.602621125710907
Merged-chr1-155059674-4	chr1	155059164	155060164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23600.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.5365264056039	5.3056417287258	5.86021219577119	5.60123246658455	5.2309858677833	5.73404807648889	-0.0906294333870778	0.807643818735955	0.954557080558103
Merged-chr3-132115941-4	chr3	132115458	132116458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	30666.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.71172605808092	5.88249561215581	5.74998120315878	5.74792457459634	5.83714227835959	5.59202755214332	-0.0851767979348867	0.785569902722281	0.948078929885768
Merged-chr8-88198448-2	chr8	88197948	88198948	+	924.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	-765.0	NM_001164499	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	6.05185498803991	6.67281678719299	6.04227415177565	5.90755776434557	6.34594499108833	5.7098337170026	-0.453813604938642	0.215489701866959	0.608899282194137
Merged-chr1-181846006-4	chr1	181845520	181846520	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3619.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	3.99848810054168	3.55338500408568	3.58778979568708	3.79882985618755	3.87268161236661	3.82264161993925	0.309173028859349	0.582070709379346	0.873508337816738
Merged-chr11-21079931-4	chr11	21079430	21080430	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11394.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.45970790417221	4.57077971110222	4.56228580767029	4.36951414764701	4.61391759562565	4.70624915506364	0.0921105714198519	0.829530693767469	0.960114979147503
Merged-chr18-13008174-1	chr18	13007674	13008674	+	830.0	f0_balb.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	1184.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	4.58372122531788	4.71080255339565	4.37620084608519	4.50804316764966	4.5331906106877	4.44482776376079	-0.184399144229211	0.66891876633001	0.909385924601941
Merged-chr9-45298256-4	chr9	45297775	45298775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20825.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	7.21151643079037	6.8874823593127	7.13878291226862	7.31376688912784	7.17141709683086	7.13411868914018	0.189064058158328	0.446897813138603	0.806159145464037
Merged-chr11-110697213-4	chr11	110696714	110697714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	217874.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.47061670700433	4.51321830901346	4.48318328796598	4.40857404136664	4.16604259570311	4.13936263672665	-0.641122691622733	0.155115136192854	0.524624837506502
Merged-chr16-37869789-4	chr16	37869253	37870253	+	995.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1353.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	6.27151777026174	6.46512723899268	6.36349253988802	6.25409186652412	6.67468974391789	6.54953888648074	0.225991901693295	0.428325627398854	0.795165632284059
Merged-chr8-84907743-4	chr8	84907281	84908281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	-843.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	6.62317098390374	6.7844536847951	6.67776526024647	6.89727047685402	7.01080181921979	6.63578405967275	0.264074657802707	0.315919135058933	0.710133165572133
Merged-chr12-75415175-4	chr12	75414675	75415675	+	943.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	1606.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	3.78331003860433	3.994369195281	4.07472192440881	3.64506733259333	3.97008193645393	4.22811345918705	0.0330477936544393	0.951580793523761	0.988861568701841
Merged-chr17-35822404-2	chr17	35821904	35822904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	691.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	8.07270481432164	8.09023200379927	7.82987344091304	8.18856075256381	8.52803030192775	8.13258543481573	0.413643976689689	0.0791086084958137	0.371764887366975
Merged-chr14-121427894-4	chr14	121427401	121428401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-48671.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.04738380938265	3.2287173009487	3.25740200902694	3.41831090577269	3.56536847604352	3.5495505734088	1.33884203416812	0.0308549337434744	0.2126003310775
Merged-chr3-57731554-2	chr3	57731054	57732054	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4503.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	3.99763569685982	3.93560236815767	3.58944326460846	3.69097109847006	3.70749337901132	3.71796332767596	-0.509254663313826	0.353769391757365	0.740929143625235
Merged-chr5-103376576-4	chr5	103376072	103377072	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29974.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	3.19577012686756	2.98082277015686	2.82831603206469	2.96879491079263	2.75710153412644	3.08694492590853	-0.348484944410973	0.630502622263616	0.894734411238057
Merged-chr15-58747928-2	chr15	58747428	58748428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	75499.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.95029958876942	4.70546831847936	5.0063857413048	4.85677138330579	4.83118486129077	4.78110040490678	-0.139109633053085	0.723146293334895	0.928989158354973
Merged-chr7-25436377-4	chr7	25435876	25436876	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23490.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	4.72419616865422	4.83236624103251	5.32911890032271	5.12100326409625	4.89884308798617	5.36336727530591	0.330010245005218	0.432250215683957	0.797270167804312
Merged-chr14-123990023-3	chr14	123989494	123990494	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045479, intron 1 of 3)	intron (NR_045479, intron 1 of 3)	2359.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	2.81190071930713	2.79822131695904	2.84940057162768	2.82292756107685	2.84529995382373	2.92180412829458	0.218407029092065	0.754253640242981	0.938831349718589
Merged-chr6-86490118-4	chr6	86489613	86490613	+	934.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1886.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	3.52681175127554	3.35615693718273	3.51345859391741	3.39098466048483	3.58064055880099	3.78504744115589	0.449111329792168	0.443837834443528	0.803884349333946
Merged-chr7-25717775-2	chr7	25717275	25718275	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 1 of 4)	ID_B1|SINE|B4	1278.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	3.94242166517874	3.82023267779102	4.17728224964555	4.38560976374847	3.80482166001771	4.06103019584733	0.356985995275555	0.505042732855873	0.837928144581384
Merged-chr5-137624978-2	chr5	137624478	137625478	+	698.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027708)	promoter-TSS (NM_027708)	100.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	4.542762481243	4.1678785121227	4.79539248796707	4.5468426456221	4.26851512558841	4.39572480748079	-0.280702046231405	0.556207826552259	0.86357390983939
Merged-chr7-135655343-4	chr7	135654836	135655836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-3022.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	6.80855713662078	6.92015254334475	6.60354442821474	6.79437518572446	7.00030556151387	7.18637025722508	0.318669262532909	0.232740767977427	0.629028285375831
Merged-chr7-143051508-2	chr7	143051008	143052008	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-1242.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	3.39561732988327	3.0709093385172	3.37005144914958	3.20844867982938	3.34964767782465	3.64543879231907	0.47830548565906	0.458482983674554	0.813056725672258
Merged-chr7-44051415-3	chr7	44050905	44051905	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020268)	promoter-TSS (NM_020268)	-885.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	2.52627452352645	2.93838354315942	2.85220367505046	2.40049064195128	2.34953028587191	2.34876872029769	-2.74281253970384	0.00325998305470128	1
Merged-chr1-60852557-4	chr1	60852053	60853053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56472.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.84976558558416	4.3473871817018	4.33547597092709	4.72172158213414	4.66048366722485	4.30772940761684	0.0971447588070452	0.838362791455442	0.962518552953479
Merged-chr12-51692079-4	chr12	51691577	51692577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052973)	promoter-TSS (NM_052973)	-163.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	8.23614187810522	8.34349646555773	8.20368403375399	8.30262374316612	8.1051164354497	8.31567042089239	-0.0326260404479022	0.877081642583392	0.971489168500291
Merged-chr19-5433159-4	chr19	5432640	5433640	+	893.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7996.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	5.09673316743969	5.14284194095283	5.35704259248454	5.25586868539727	5.19496995515458	5.80148576111937	0.469797197481267	0.221910714234416	0.616788023295903
Merged-chr8-26076332-4	chr8	26075846	26076846	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 6 of 21)	intron (NM_207659, intron 6 of 21)	-6263.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	3.94899761319524	3.89940282039529	4.10959891044747	3.98934458438867	4.01951916978437	4.03853031473316	0.0996923358947338	0.83918999621534	0.962725890398731
Merged-chr17-10740346-4	chr17	10739833	10740833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	99858.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	3.29060887034113	3.511529933351	3.4115403952382	3.37740437229968	3.34449301929287	3.42728914033586	-0.107638075785737	0.856426181607931	0.966519865987152
Merged-chr17-21449881-4	chr17	21449380	21450380	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-494.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	5.33077613908476	5.23483171751315	5.60033268134292	5.61656841495227	5.66946837416994	5.58121189157665	0.459907576740462	0.169583657262935	0.546439877378084
Merged-chr13-60605462-4	chr13	60604972	60605972	+	907.785706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	3261.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.44419116776842	5.45156377213692	5.94693990603491	5.47581184198401	5.37321265336824	5.37172706201407	-0.407861790996793	0.250677025917432	0.648153521953385
Merged-chr7-48788525-4	chr7	48788026	48789026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-477.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	6.21849769476815	6.36149531714843	6.45352333358058	6.33763314546554	6.48492807664833	6.4410445318403	0.133974859561922	0.622871765467157	0.891249034616027
Merged-chr16-48831497-3	chr16	48830991	48831991	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	5.41642378998233	5.35089540172513	5.16138696218983	5.30622794466043	5.48081015425697	5.4793805222344	0.200388021208056	0.559815336562685	0.86512447604019
Merged-chr10-98776469-4	chr10	98775969	98776969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138173.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.49554174991879	6.78397215633243	7.08746460677761	7.29784681535977	7.1013096354576	7.2783316822913	0.0986320547527575	0.732319760135678	0.931723932448277
Merged-chr5-30915655-2	chr5	30915151	30916151	+	889.1999509999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_133918, exon 3 of 8)	exon (NM_133918, exon 3 of 8)	1865.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	5.18247450138796	4.78248425722105	5.56382428267623	5.25959139033009	5.16338950982283	5.19857559744047	0.00741772400636747	0.98543169344574	0.996904015210561
Merged-chr17-47793520-4	chr17	47793041	47794041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.25490009097741	6.46841742139942	5.88643385005354	6.29191652346665	6.36676286904199	5.97480315080451	-0.01085730547096	0.973007861705086	0.993911440948179
Merged-chr13-119690237-4	chr13	119689731	119690731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145942)	promoter-TSS (NM_145942)	-120.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	6.28119830194612	6.35635284925077	6.02807708846574	6.2487170684428	6.23995688472213	5.99307538729961	-0.109229846459352	0.710078658561437	0.924216318440458
Merged-chr17-50388940-4	chr17	50388451	50389451	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95331.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.95206970964133	5.29569508227505	5.02422156920423	6.48968088098611	6.86133999299016	6.33844294916547	2.65260245945168	5.50205962452599e-14	1.31179191185547e-11
Merged-chr15-5236724-4	chr15	5236225	5237225	+	771.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	7462.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.83210886825182	4.19787791196284	3.85810599484635	4.24495053897092	4.21741457186154	4.03425965886854	0.548111586823252	0.283082601844083	0.681087703395862
Merged-chr5-92106465-4	chr5	92105960	92106960	+	923.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-22716.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	5.24832172942498	5.36536398086615	5.5577501811565	5.41450329411385	5.41474842978954	5.53821852944073	0.127046606287795	0.707705501339197	0.923511061969636
Merged-chr2-166697943-2	chr2	166697443	166698443	+	768.424988	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	15889.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.53918647106835	6.03076078313117	5.94594927647415	6.88426443185525	6.65191206011766	6.35252407774577	0.717147163133041	0.0290293621570203	0.204545276175912
Merged-chr16-49853839-1	chr16	49853339	49854339	+	694.0	f0_balb.idr	Intergenic	Intergenic	-1815.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.52320434467939	7.07152822007494	7.10609789364184	7.48784865007937	7.51784728266026	7.2997935497163	0.275675785547962	0.288735625779077	0.686124851873233
Merged-chr4-118409296-4	chr4	118408791	118409791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020000)	promoter-TSS (NM_020000)	-28.0	NM_198170	230676.0	Mm.415218	NM_198170	ENSMUSG00000033253	Szt2	6430407N22|TIGR	seizure threshold 2	protein-coding	6.39783966207128	6.64236645868071	6.53478575209262	6.26144311616066	6.27346182026975	6.37841834819243	-0.372287077180611	0.170212045858093	0.54753175520007
Merged-chr6-88465375-4	chr6	88464872	88465872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019685)	promoter-TSS (NM_019685)	-37.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	6.06548082941882	6.48973091692414	5.71997751305516	5.84274440083156	6.05887801491	5.63649925517242	-0.475011985425643	0.184045638092188	0.567650287433271
Merged-chr3-146657644-4	chr3	146657133	146658133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6316.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	6.81069989066052	6.88562991487064	6.74306893628787	6.35790420829569	6.71908848237441	6.67515420014472	-0.34812628138572	0.193373160750421	0.580496210394727
Merged-chr6-124477578-4	chr6	124477095	124478095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12811.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	7.53217524946438	7.21436565175903	6.64908621698491	7.15953524917786	7.27343494445367	6.74409801744839	-0.159919554085836	0.621609086350557	0.890824801601999
Merged-chr9-90034123-4	chr9	90033617	90034617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20150.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.61952202684755	5.32831201350439	5.34833381907598	6.13368501558693	6.31782932136369	6.0205251482089	1.29877515879223	5.46900467476173e-05	0.00169927162426279
Merged-chr4-41463793-2	chr4	41463293	41464293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 1 of 12)	intron (NM_024241, intron 1 of 12)	1055.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	5.80114497727885	5.96555358751196	5.86203681017682	5.71614251770189	5.75210638381267	5.8992379523887	-0.168448533349849	0.579560776959121	0.872571259966152
Merged-chr10-95279662-4	chr10	95279158	95280158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	44051.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.30598377190709	6.01185220136901	6.2880383047529	6.34004260340355	6.34471493584784	6.49440545374541	0.308510127892951	0.276752145541181	0.674062363556789
Merged-chr12-79812673-2	chr12	79812173	79813173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	112060.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.24611069589638	5.16359868790031	5.1233327383378	5.26026145170017	5.5281550540856	5.08114064708805	0.275474904626128	0.451749425183816	0.809245753174589
Merged-chr3-40746461-4	chr3	40745958	40746958	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	845.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	4.98870725056704	4.76539697486621	4.60474977157245	4.90549314784511	4.95297256829006	4.67300841513651	0.119117320415821	0.771392076993735	0.943614978016208
Merged-chr6-15727773-4	chr6	15727260	15728260	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7099.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.68385441012681	5.69139577726412	5.65257734389414	5.99478232871641	5.66951877228518	5.6025124961607	0.169293949608947	0.599650851530454	0.881122597050421
Merged-chr2-58797086-4	chr2	58796587	58797587	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41903.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.56845063217427	3.10566118215304	3.25290702334311	3.37535109121804	3.23520882781801	3.49297970598428	0.154805884663792	0.81058176809027	0.955054272231421
Merged-chr5-86064652-2	chr5	86064177	86065177	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001345903, intron 1 of 19)	intron (NM_001345903, intron 1 of 19)	906.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	4.86152741112515	4.45942125924141	4.51192853204408	4.48330201341618	4.43212936862294	4.44884262919575	-0.430410936517414	0.327186311448321	0.719396012109034
Merged-chr4-62519984-4	chr4	62519472	62520472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-63.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	7.11092812170296	7.11276676713489	7.3535071958875	6.22511039934606	6.09957876225609	5.80751496817541	-1.79046667351467	4.52165765944117e-10	5.24739317331633e-08
Merged-chr4-99033201-4	chr4	99032697	99033697	+	888.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013913, intron 2 of 6)	intron (NM_013913, intron 2 of 6)	2243.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	6.07192720861949	6.14309042548394	6.13047759622347	5.95277115164454	6.14614338777621	6.01362147409521	-0.118341092788473	0.680446015622668	0.914241422413341
Merged-chr4-137048762-4	chr4	137048235	137049235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198248)	promoter-TSS (NM_198248)	-40.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	5.82395910133998	6.01315097468024	6.09843907394563	6.29882780594811	5.8138879861191	6.25998244647058	0.266289141182307	0.405175707656027	0.780049815379569
Merged-chr1-127850257-1	chr1	127849757	127850757	+	587.0	f0_balb.idr	Intergenic	Intergenic	-9967.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	3.78128135661012	3.97740741306524	4.18774159546061	3.87441262886386	4.02865512337738	4.07742870041113	0.0325197549566917	0.94940521862911	0.988195309248553
Merged-chr11-94370962-4	chr11	94370479	94371479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	21997.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.3161305129158	5.82626858526382	6.39382242217064	6.11540572075757	6.05629338061533	6.00916220316462	-0.225616533586759	0.477353078696696	0.823237639056184
Merged-chr7-88285354-5	chr7	88284804	88285804	+	861.995544	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	7219.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.05511982555536	5.76404001131431	5.72998550119846	6.08754592197813	6.29874320046175	5.99671907278293	0.480818222221048	0.121678302101062	0.466679067652143
Merged-chr8-36934366-2	chr8	36933866	36934866	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	ORR1C2|LTR|ERVL-MaLR	18076.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.52185584405245	2.68225943986566	2.83299123500404	3.0590859405327	2.69409699029823	3.13785060673854	1.48848988327144	0.0566387095027946	0.306862465184824
Merged-chr3-27982728-4	chr3	27982196	27983196	+	964.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164056, intron 2 of 26)	intron (NM_001164056, intron 2 of 26)	-1475.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.26236858015597	3.97708277649796	3.95714862830904	4.21120928129487	3.84398783307675	4.07688445298086	-0.0859506545619281	0.866666058756473	0.969114221403526
Merged-chr11-119709414-4	chr11	119708919	119709919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106514.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	5.39326953680775	5.45078213117088	5.13457857469982	5.40014539814677	5.2225939101378	5.30085674856076	-0.0729270617464043	0.835419660796198	0.961706261746066
Merged-chr9-95572778-4	chr9	95572269	95573269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12952.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.66267601290833	7.33573782768935	7.32519788178182	7.59438197919921	7.8608525851751	7.26325786895995	0.220856513395315	0.415024782209174	0.786118101437797
Merged-chr12-84750863-2	chr12	84750363	84751363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22249.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	6.46152901150218	6.12431208752689	6.05477284021418	6.26055275435103	6.46710403561373	6.13900128740211	0.119113104177745	0.693951307843765	0.919126759675023
Merged-chr17-34647617-4	chr17	34647120	34648120	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 1 of 17)	CpG	474.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	7.21626270289596	7.23559141326585	7.1231804089817	6.50826707787354	6.81630399976792	6.69880391326523	-0.781788301005348	0.00200651270667456	0.0310503829825138
Merged-chr11-116422777-2	chr11	116422277	116423277	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-9745.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.49070828731551	3.25856152755354	3.4477816541563	3.68410066716315	3.46992482419295	3.72901679493917	0.824686985116937	0.16129499644213	0.534085481473864
Merged-chr3-8666046-2	chr3	8665546	8666546	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010423, intron 3 of 4)	intron (NM_010423, intron 3 of 4)	992.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.2263036186044	3.22122467988822	3.1905732556895	2.94968041455071	3.10154665482567	3.42410896892337	-0.195129373970709	0.769263821005905	0.943096029055944
Merged-chr6-42350895-6	chr6	42350384	42351384	+	990.8148189999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 2 of 9)	intron (NM_001289618, intron 2 of 9)	1056.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	7.160972285021	7.19645826650099	6.93988731372513	7.13525659503566	7.18670998171304	7.4605207822597	0.227299726238787	0.365047786362274	0.75025511992679
Merged-chr8-40995071-4	chr8	40994583	40995583	+	915.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 12 of 13)	G-rich|Low_complexity|Low_complexity	-22385.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.98636327044662	4.0834693353709	3.90867281084827	4.02843480616402	4.08983489833695	4.26088880416051	0.362278516880366	0.458925758981623	0.813236440920954
Merged-chr16-49840983-2	chr16	49840483	49841483	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18_MM|LTR|ERVK	-14671.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.90940784820523	5.6990318962003	5.68049863289583	5.60405532735264	5.46133097457081	5.63437262984655	-0.386903817821617	0.226417651952543	0.621384609771668
Merged-chr17-57077829-3	chr17	57077326	57078326	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153551, intron 1 of 23)	intron (NM_153551, intron 1 of 23)	684.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	6.76076032680711	6.79801010469177	6.53800142734188	6.71216697431845	6.98256677779207	6.79694211408721	0.201725079161735	0.443024437343478	0.80353074331471
Merged-chr10-13983045-4	chr10	13982546	13983546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16667.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.66396290879388	8.82805272275013	8.25674740141423	8.61566613751971	9.0708304049025	8.41964269862487	0.177149740632793	0.517641552575182	0.844713047787325
Merged-chr9-107626883-3	chr9	107626351	107627351	+	876.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	8491.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.6357899023017	3.48099609545617	4.41416623348287	3.96696627015604	3.96793950016562	4.02890511452423	0.22950562724425	0.7098884723783	0.924166640014037
Merged-chr7-47008447-4	chr7	47007933	47008933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175318)	promoter-TSS (NM_175318)	-19.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	8.50106057888091	8.68636499987687	8.19989792768716	8.52715193222929	8.83036501742857	8.12021705050181	0.0700548269959268	0.7961683261766	0.951409082548819
Merged-chr10-91140919-2	chr10	91140419	91141419	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16956.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	4.05625684236436	4.33888724264893	4.39692584006817	4.21263314158927	4.10703223869208	4.64870203659145	0.176941075597977	0.721590213686429	0.928538399090986
Merged-chr16-18424148-2	chr16	18423648	18424648	+	649.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4|SINE|B4	-2269.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	5.96034266238	6.50714623822825	5.84276122257395	6.28932327339596	6.3694803163086	6.05651141018876	0.168013591280498	0.616527294309158	0.888391945757827
Merged-chr13-85506928-4	chr13	85506481	85507481	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217495.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.03815191442201	5.39919583737829	5.13354139008267	5.29014264032916	5.23542060727134	5.41857761568834	0.211547199534129	0.559296930319058	0.864901733108576
Merged-chr2-157063586-4	chr2	157063078	157064078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15687.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	5.62330008647914	5.27135986376439	5.51851556376175	5.11344708633734	4.86993997569573	5.08756594412157	-0.92915028216234	0.011181067143665	0.10877979591823
Merged-chr7-28385104-2	chr7	28384604	28385604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026042)	TTS (NM_026042)	-5876.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	7.22844341310521	6.95621818367307	7.33736997997485	7.03758151995574	7.39332037647682	7.39460097241085	0.161284755166391	0.538009052292058	0.854944075396138
Merged-chr9-66277133-7	chr9	66276625	66277625	+	961.157166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73325.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.9279362338604	5.5706382429922	5.42092513134321	5.69570465243076	5.58689426210604	5.42136194028507	-0.167295197902872	0.630218838690231	0.894642529318186
Merged-chr8-85083665-4	chr8	85083170	85084170	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 1 of 23)	intron (NM_010764, intron 1 of 23)	401.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	8.00835162207378	7.98550344408697	7.61692215024661	7.87221309228163	8.41074780758648	7.72154096327676	0.226314230520894	0.418872177432049	0.788755230826602
Merged-chr4-8837666-4	chr4	8837160	8838160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	intron (NM_001355382, intron 14 of 36)	86336.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.89710488709617	6.929123341135	7.08630263846144	7.2953499642946	7.68810836585695	7.34584124707578	0.739937687330041	0.00346462786555629	0.0468731310000396
Merged-chr11-70541062-2	chr11	70540562	70541562	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361935, intron 2 of 23)	intron (NM_001361935, intron 2 of 23)	790.0	NM_001302476	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	3.84888038558053	3.27562948886724	3.96836381402405	3.94056867500889	3.76170201569771	3.63354966674179	0.17655298303007	0.77712888337203	0.945018349303776
Merged-chr1-66861294-3	chr1	66860795	66861795	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	2014.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	4.25621203801695	4.27155844483964	4.10958825200158	4.55939450051462	4.53276956432862	3.90751939521304	0.417445403430274	0.415855212957885	0.786747452594524
Merged-chr13-112466231-3	chr13	112465733	112466733	+	838.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2163.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.45288779583402	4.2210591540643	3.83414703460756	4.17856712348598	4.37846572416378	4.07208690152193	0.0508997131632778	0.922727525517025	0.982621045978137
Merged-chr19-32387899-4	chr19	32387355	32388355	+	922.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362423, exon 1 of 10)	5' UTR (NM_001362423, exon 1 of 10)	194.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.06865757391946	4.93334677689868	4.5484206157936	4.58541601089499	4.32688715643441	4.48241257314649	-0.984003262265743	0.024403039311938	0.184091395745035
Merged-chr14-19733517-4	chr14	19732977	19733977	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17780.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.08228495352315	4.66603783893003	4.98955462262759	4.76013282873543	4.21802231322522	5.20921106559684	-0.302833702229061	0.540219809112575	0.85632302227606
Merged-chr3-8969725-4	chr3	8969220	8970220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-5574.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.09069310163597	6.66435227669174	6.88017278809971	7.12770564140939	6.95663724507185	7.16210789328887	0.289669171426387	0.272408894923732	0.669663338532819
Merged-chr18-36296667-4	chr18	36296168	36297168	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3433.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	5.47507349646953	5.71876587849173	5.79693387310097	6.21499501370704	6.26669412627973	5.95780072677093	0.875883403747044	0.00491878368974621	0.0605536548685312
Merged-chr2-160021775-4	chr2	160021297	160022297	+	945.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	5144.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.06317137849952	6.00737485163911	6.27915097127501	5.89988586182235	6.13677943208451	6.22251891776468	-0.0384050633988428	0.897614880787388	0.976055448838318
Merged-chr19-6077211-4	chr19	6076733	6077733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-46.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	6.84051224492991	6.9740252602988	6.90150189922401	7.02910702098143	7.04361079926092	6.97371271337546	0.169673610296764	0.48046639475215	0.824543506620807
Merged-chr4-136511812-4	chr4	136511304	136512304	+	824.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	42043.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	4.78430809108668	5.02315948834291	5.01486370376852	4.7931503423505	4.75985429777394	5.17335415208918	-0.0729014348212194	0.855910098555058	0.966291297241215
Merged-chr10-4047265-3	chr10	4046766	4047766	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	74191.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	3.88791459772653	4.4040053618378	4.06402785261657	3.79244538734923	3.39598195916246	3.67050108784684	-1.6559915804254	0.0042690162894005	0.0546318528773358
Merged-chr10-40500058-4	chr10	40499561	40500561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70301.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	6.15425079772089	6.37632581244457	6.0168245821369	6.00156472387677	5.73879284627998	5.80573587309892	-0.601190489224041	0.0497688818484859	0.283762018262861
Merged-chr2-110017781-4	chr2	110017288	110018288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026613)	promoter-TSS (NM_026613)	-29.0	NM_001355581	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	5.77574515176427	5.87307891110007	5.4420515452198	5.20126392194886	5.31255855219247	5.21048328432065	-0.908319824810336	0.00861428370433965	0.0908347888063229
Merged-chr7-27689387-4	chr7	27688864	27689864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	24.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	4.92700009770476	4.53616653531183	5.17661931694306	4.88696678267623	4.54636853867889	4.60492144492088	-0.476060009677392	0.283884039095054	0.681514542091937
Merged-chr4-129019044-4	chr4	129018545	129019545	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25821.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	4.07366602803017	3.92942776218987	4.14419893056437	3.91625291585017	4.06689947020075	4.16683186365373	0.0115573377225377	0.98123508888885	0.995687678606673
Merged-chr11-3164650-3	chr11	3164228	3165228	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 8 of 32)	intron (NM_030207, intron 8 of 32)	28735.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.27022522348109	6.79242102931295	6.89793742161845	4.52017193881578	4.08957429066964	7.43715543924331	-0.524538252659367	0.824078610514957	0.958461473318254
Merged-chr11-82102395-2	chr11	82101895	82102895	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011331, intron 1 of 2)	intron (NM_011331, intron 1 of 2)	550.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	6.49550234865649	6.22650135532948	5.72059015203442	6.25799128504868	6.33058082765566	6.25183370747112	0.133812957365918	0.684436764238429	0.915884502963143
Merged-chr7-81290726-4	chr7	81290209	81291209	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 3 of 21)	MER105|DNA|DNA	54525.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	5.14994431660193	5.02823247682898	5.19379952022411	5.25375363918857	5.0002940977195	4.7827633695653	-0.185918865209782	0.628144821150258	0.893508518159715
Merged-chr4-136878834-4	chr4	136878318	136879318	+	808.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	7359.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	3.15647059873627	3.16844328378708	3.54782506527045	3.42460731904209	3.15840575097431	3.3560146542202	0.0762590669843459	0.905490345630912	0.978379678729199
Merged-chr17-42924965-4	chr17	42924466	42925466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48542.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.34772092198875	6.43660421830648	6.57257461967051	6.61755680333546	6.91548503853595	6.64835455433883	0.466659557427726	0.0844286788013844	0.384589559265469
Merged-chr4-45108120-4	chr4	45107582	45108582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	31.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	5.12627361842771	5.19623758527384	5.31346702843396	4.9473180554272	4.92721395522044	4.61438329643224	-0.76805091014741	0.0475157976223933	0.276115265630568
Merged-chr14-54777707-2	chr14	54777209	54778209	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	4177.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.91005228876423	4.76173562676621	5.06972144145463	5.17688842286181	4.97178821948274	4.88559699416753	0.239391239741653	0.536230032530105	0.85392789486322
Merged-chr6-119396418-4	chr6	119395932	119396932	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-7698.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.06790673449925	4.98551959149137	4.837266864605	4.75118563683636	4.51141121156642	4.66486438695528	-0.759722396438884	0.0571732730272973	0.308433201637406
Merged-chr11-83703908-4	chr11	83703395	83704395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-161.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	7.36309054969068	7.3933485037806	7.3832640846859	7.39762072532201	7.5941520447718	7.38621703044846	0.130827094579644	0.567095889833223	0.867742628008279
Merged-chr5-107984796-4	chr5	107984279	107985279	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	ID_B1|SINE|B4	2298.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.18981869341641	5.0384893827156	5.14320726558606	4.93323907495048	4.76472811460193	5.46864701926166	-0.100277628964493	0.807269897008457	0.95453117889869
Merged-chr4-150211910-2	chr4	150211410	150212410	+	839.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-10775.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	5.79732687409061	5.65436528462032	5.6134960638832	5.91374940443845	5.89323122735462	5.6190638732355	0.234337317519475	0.458858668258041	0.813236440920954
Merged-chr17-17625302-4	chr17	17624769	17625769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-780.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	8.49856555478389	8.64444130101826	8.40742297825867	8.51437521760439	8.75135144956905	8.58764260606968	0.139576854455399	0.508523505241609	0.839818423824339
Merged-chr11-48901057-4	chr11	48900549	48901549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	1103.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	6.56703302989981	6.30033602853187	6.50662167916433	6.57319844344164	6.81264069571739	6.56597189592996	0.324410973943036	0.234877573572438	0.631011660267837
Merged-chr17-73928184-4	chr17	73927675	73928675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	B1F1|SINE|Alu	22021.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.3844166810155	7.40186444842182	6.97726245488118	7.07845878220245	7.1840209724428	6.73936533671071	-0.379370707382235	0.167145660740212	0.542794328855415
Merged-chr2-129621343-1	chr2	129620843	129621843	+	761.0	f1_balb.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	25881.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.49669343814859	3.32502061468944	3.56455587237851	3.47116256114636	3.5384002772851	3.73484800446947	0.434968953882239	0.453452005463995	0.809761744660326
Merged-chr14-87141274-4	chr14	87140763	87141763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019670)	promoter-TSS (NM_019670)	-39.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	4.19934137203932	3.91975661101731	3.58490774860532	4.06854312221552	3.9223350375716	3.88706642828272	0.0824726252851083	0.882670623445436	0.973231787904583
Merged-chr8-46817424-4	chr8	46816907	46817907	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	77662.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.65007806008138	5.66952027993698	5.73166861990958	5.51055832501489	5.73837487249367	5.68960283136014	-0.0532996751316191	0.866076142448497	0.968757596344316
Merged-chr2-52941114-3	chr2	52940631	52941631	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83263.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.7647635143742	7.18906615710581	6.88738261720917	6.73381679640138	7.22810412294166	6.95973630550059	0.0505542924248719	0.859307997888936	0.967267211164924
Merged-chr8-84908672-4	chr8	84908175	84909175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	51.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	8.41904108607569	8.47972379639983	7.88302098893111	8.38397535666609	8.65699230500608	7.70811823499245	0.0352064957829631	0.910337059386869	0.97984424692051
Merged-chr17-87098037-2	chr17	87097527	87098527	+	797.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9652.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.6947220179836	3.72606860768676	3.9318818400863	3.37218343361134	2.91621899816337	3.39464260602941	-2.15394171460429	0.00205003772288925	0.0315304138347816
Merged-chr13-37894398-1	chr13	37893898	37894898	+	970.0	f0_balb.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	5527.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.15858315843324	3.9101385795332	4.14159544232891	4.07456643319913	3.79968085875045	3.81624573250808	-0.507560625986413	0.323367671087226	0.71668986599242
Merged-chr10-13985697-2	chr10	13985197	13986197	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	19318.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.52551995158137	4.0387902126259	4.05291633091588	4.28211231344127	4.02139428530478	3.79705303136823	-0.499364536716828	0.354176856277926	0.741374573248319
Merged-chr2-154713243-1	chr2	154712743	154713743	+	869.0	f1_c57bl6.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	56217.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	3.27519870573365	2.87842652859839	3.28709793952008	2.87777135091878	2.79679918080947	3.08159322121483	-1.10476692145157	0.125072984238794	0.47324236608347
Merged-chr2-102986574-4	chr2	102986079	102987079	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84914.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.83692605714238	5.76200481886328	5.81955478020892	5.7272981388013	5.64701979990518	5.67443869294811	-0.224514471330992	0.462150684161033	0.815111700283474
Merged-chr8-123374888-3	chr8	123374379	123375379	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	intron (NM_001359076, intron 1 of 16)	1168.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	6.07521120337488	5.61616637460332	5.98156684869376	6.18610788101287	6.05926460920265	6.31113647859555	0.48314114114086	0.125276935637124	0.473596443106615
Merged-chr3-54358959-4	chr3	54358488	54359488	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2119.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	5.8171395628078	5.91396177577217	5.93031848178436	6.09612878106557	6.3208373256415	5.7878814244422	0.374472142486677	0.234489014856393	0.630591822623526
Merged-chr16-92675878-4	chr16	92675372	92676372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	21457.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.10933336464522	7.98451011170007	7.58357278228074	7.64145428262849	7.83758723710517	7.66927979835959	-0.282774112450744	0.253932169611871	0.651117231535132
Merged-chr2-51089917-4	chr2	51089418	51090418	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59193.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	6.81495134371282	7.25933316731776	6.35996181269836	6.53275906094034	6.75512244924026	6.53836410211753	-0.404978886590767	0.211488433473559	0.603945120913907
Merged-chr2-120661084-1	chr2	120660584	120661584	+	582.0	f0_balb.idr	Intergenic	Intergenic	51489.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	5.61348597023562	5.48443618547974	5.54330102492286	5.68137924013896	5.75245654692877	5.57745056860596	0.244382054826948	0.442470208133158	0.803210868548523
Merged-chr2-113645903-4	chr2	113645407	113646407	+	949.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39183.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.10780256716463	3.8616328187204	3.95063245920418	3.66403597259767	4.04202182354007	3.81678760141018	-0.364137836100116	0.496445729245057	0.833046085446241
Merged-chr2-15056049-4	chr2	15055569	15056569	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029466, intron 1 of 5)	intron (NM_029466, intron 1 of 5)	707.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	5.59828616780113	5.80868102821446	5.21556473058205	5.7733539283137	5.85883360340382	5.35278515098137	0.210489199585386	0.572009763929384	0.869773807126863
Merged-chr18-9708148-1	chr18	9707648	9708648	+	1000.0	f0_balb.idr	intron (NM_130449, intron 1 of 9)	CpG	500.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.71631687892811	7.41747982252557	6.5214295632144	5.28668465299468	5.13745135739392	5.15662377603226	-3.07835144781585	1.41031779352621e-16	5.28602355692473e-14
Merged-chr19-17131269-1	chr19	17130769	17131769	+	776.5	f0_balb.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175151.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	3.99519015582282	4.09331940108502	4.24907387787567	4.0716459799838	3.81069214059427	4.23017240414709	-0.212074678079899	0.674708174539363	0.911853445810291
Merged-chr1-184665577-3	chr1	184665106	184666106	+	782.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46891.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	3.3652447652819	3.32542647001499	3.28200239181017	3.2534695307079	3.03392317383205	3.1177497632203	-0.803294091252198	0.206662823662111	0.597309359759271
Merged-chr9-90058656-2	chr9	90058156	90059156	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	RSINE1|SINE|B4	4389.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.91047908401077	4.57059358552976	4.79710389246202	5.40983799475339	5.51843855554453	5.67682429706377	1.59691209272551	2.33554004734047e-05	0.000832985924813999
Merged-chr2-5714613-7	chr2	5714151	5715151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177343, exon 1 of 11)	5' UTR (NM_177343, exon 1 of 11)	111.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	7.18063011656385	6.90654013089421	7.15184591427071	6.99297778178707	6.88357843355574	6.57741698187364	-0.37436189183138	0.160753642010161	0.533494234902646
Merged-chr13-9182045-4	chr13	9181554	9182554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.38849102840342	3.35889704531403	3.3980227945809	3.56531277977358	3.56288832700406	3.41281518891513	0.521188305844929	0.369563309116461	0.754227853743163
Merged-chr4-101686552-4	chr4	101686040	101687040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30867.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	5.90773072868726	6.13555394132082	6.56234050598756	6.12501151077123	6.36630526832017	5.96012984168933	-0.0828566944010416	0.803272615272963	0.953447441859101
Merged-chr13-55021319-4	chr13	55020786	55021786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206390)	promoter-TSS (NM_001206390)	99.0	NM_001206392	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	7.89589392362276	8.14515955333275	7.78596694724618	8.21034957367979	8.43817958047538	7.86813965614184	0.346489729180222	0.173998626244997	0.553210993472106
Merged-chr1-34856254-2	chr1	34855754	34856754	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	6265.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	6.05457862085574	6.01395328614407	6.33793776190667	6.2968988604369	6.65568793790292	6.32090048394867	0.516956303707779	0.0822948125441927	0.379332363801987
Merged-chr9-110532362-4	chr9	110531856	110532856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081340)	promoter-TSS (NM_001081340)	-241.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	7.95497964517913	7.87459115418292	7.81745488866988	8.10723899292789	7.9135551102766	7.98447573874862	0.167064789432613	0.436661664257089	0.799551248563286
Merged-chr1-152526971-2	chr1	152526471	152527471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98246.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.62924687033093	6.08023689529896	6.33315031866583	6.20770887889642	6.41712420710681	6.21062702731252	-0.134431921616642	0.661274570480034	0.906313637571144
Merged-chr11-52043421-4	chr11	52042926	52043926	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	39205.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	3.53298216373331	3.33982182324405	3.4081427869763	3.66209911454197	3.72582056871625	3.53656208885252	0.797000675902871	0.166809853913849	0.54240433228749
Merged-chr10-51521150-2	chr10	51520650	51521650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30252.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.8622054632522	3.95044263400123	4.07145636166989	3.98548975777011	3.70887174506467	4.09386824738255	-0.0914189613247975	0.860416672229219	0.967494646757537
Merged-chr7-27486383-2	chr7	27485883	27486883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-570.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	6.04473490403387	5.97258540781823	6.17233141281149	6.11197735400217	6.25521522753871	5.91636481216287	0.092620405448649	0.755107814705166	0.939234200041668
Merged-chr11-29655347-3	chr11	29654849	29655849	+	641.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-37549.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.25014777940872	3.33958577682513	3.21732014062555	3.24512171704105	3.15188648071165	3.10993274760891	-0.423771553420832	0.500739795431943	0.835242909787083
Merged-chr9-25505307-2	chr9	25504807	25505807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23710.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.48064170590759	4.26669141953708	3.97876871732638	4.32684050245234	4.47124044366833	3.88121858418135	-0.0137415553992174	0.979526251594308	0.995255032086493
Merged-chr8-115703414-2	chr8	115702914	115703914	+	572.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025577, exon 1 of 1)	3' UTR (NM_001025577, exon 1 of 1)	3480.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.65206886087896	6.13323624050946	5.5832243030072	6.33078501429911	6.33336058366937	5.92602796394882	0.673164294133378	0.049454261593089	0.282787894931493
Merged-chr5-88557037-2	chr5	88556537	88557537	+	661.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023054)	TTS (NM_023054)	2575.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	3.31255789969402	3.139600373161	3.51914389181729	3.14990979836032	3.02149602100486	3.43646660033388	-0.491848897468695	0.457045781362694	0.811993709825292
Merged-chr1-191124016-5	chr1	191123616	191124616	+	852.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25702.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.65633502470055	4.26867048630541	4.6102217151941	4.42553689070399	4.10744540253349	4.55895331175588	-0.388847205444416	0.410636828687439	0.78349619906958
Merged-chr16-44759211-2	chr16	44758711	44759711	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6525.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.61018603748286	4.27598138942376	4.54373756118337	4.17089401678174	4.17081396854515	3.91015117746256	-1.03331374984141	0.0338406453008067	0.224977022546302
Merged-chr15-67767815-4	chr15	67767307	67768307	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	491049.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.63924117317898	3.32614733064056	3.70661155011592	3.62299499590166	3.31712026086006	3.82375735231648	0.117206496487997	0.848420244560486	0.964356989789491
Merged-chr11-82993004-2	chr11	82992504	82993504	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1174.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	3.51729564887799	3.48099257832753	3.6395522635798	3.60741558248783	3.3059451402505	3.7584913689184	0.0634934323912546	0.914543449739063	0.980912729144991
Merged-chr8-104370096-2	chr8	104369596	104370596	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25711.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.29006372204465	5.43239636847617	5.49791807063444	4.94538535413646	5.06834828784484	5.02934496857641	-0.79270913224794	0.0260575783951021	0.191520093905102
Merged-chr1-172241092-4	chr1	172240586	172241586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013734, intron 11 of 22)	intron (NM_013734, intron 11 of 22)	17338.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	5.60952181207412	5.54273795226787	5.54370061679352	5.32515223591128	5.14039785485305	5.52273050939263	-0.469126978153858	0.169355059809848	0.546111904953782
Merged-chr5-135712424-3	chr5	135711914	135712914	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	23269.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	6.35977416375854	6.16824041730487	6.03558002378429	5.75749208186626	5.87118107606605	5.8562394415013	-0.643901232358356	0.0311013304088637	0.213503795120925
Merged-chr5-137333113-2	chr5	137332613	137333613	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359611, intron 2 of 14)	intron (NM_001359611, intron 2 of 14)	469.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	4.62472237876231	4.68977123238906	5.20734569231518	5.22084685576292	4.97983255353116	4.86629994094802	0.392244414256505	0.353763532013646	0.740929143625235
Merged-chr18-36680550-1	chr18	36680050	36681050	+	674.0	f1_balb.idr	5' UTR (NM_001083317, exon 2 of 4)	5' UTR (NM_001083317, exon 2 of 4)	-1184.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	2.98495397634521	2.93649707945316	3.08253453090247	2.93666027811262	3.0445566884678	2.91675533194512	-0.13081547381983	0.846729011045326	0.964111312125802
Merged-chr9-77959959-4	chr9	77959459	77960459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 2 of 7)	intron (NM_134255, intron 2 of 7)	42594.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	5.64888867616102	5.44161658073837	5.40894070435688	5.54417473920231	5.35272609674645	5.37940096001492	-0.157037593944961	0.640781703850469	0.898625790268313
Merged-chr5-21737861-2	chr5	21737361	21738361	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028431, intron 1 of 12)	intron (NM_028431, intron 1 of 12)	701.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	4.58186997098778	4.5249011332932	4.48388780206506	4.58038165673324	4.69475280641966	4.46360284694939	0.142227922837815	0.735475829067922	0.932744628746236
Merged-chr16-91408104-3	chr16	91407564	91408564	+	830.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	1829.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.94725426287833	6.83920207407063	6.75492951383668	7.35340789397776	7.3448657687647	6.84578671554077	0.545411807297228	0.0432771963473638	0.261221125877309
Merged-chr9-58250832-2	chr9	58250332	58251332	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_178087	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	3.59321299025495	3.2754996449153	3.47019804027182	3.5647173555937	3.42182443879452	3.93590111353341	0.700166570259265	0.252860271585421	0.650244514834543
Merged-chr6-72349239-2	chr6	72348739	72349739	+	545.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	1922.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	5.92603989558274	6.0256266650431	6.21332434352613	6.04424490904668	6.24521625831809	6.03997103385306	0.118206511754392	0.6892863599874	0.917319650405699
Merged-chr10-80055725-2	chr10	80055225	80056225	+	939.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037741, intron 4 of 6)	B3|SINE|B2	1706.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	4.11862206492196	3.9946411671607	4.55135126707504	4.17535324217206	4.27724073598976	4.2961023135018	0.0522712598044157	0.915525730440207	0.981082126757531
Merged-chr7-116608021-2	chr7	116607521	116608521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103652.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.28036392474623	6.31881261228096	6.44935801151865	6.66402214750732	6.96552584583829	6.3342275056545	0.558633318100803	0.0598699659632178	0.316738309248947
Merged-chr5-21036301-4	chr5	21035801	21036801	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	RSINE1|SINE|B4	-1054.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	7.71837110619672	7.19804734393935	6.93084768878679	7.66720823430529	8.03196198823744	7.12167054480882	0.488656122337505	0.149087110747469	0.515274779276237
Merged-chr10-80680878-2	chr10	80680378	80681378	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4585.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	6.05940734992986	6.15648975822264	5.85151056111505	6.26051231747845	6.48882178946036	6.32067971629932	0.547316018386793	0.0602881608690257	0.317819138975538
Merged-chr9-7573755-2	chr9	7573255	7574255	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 4 of 9)	intron (NM_001310717, intron 4 of 9)	2359.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	6.0216278366517	5.95764024757625	6.07415936189054	6.19354288122653	6.08985917397914	5.65177374738557	-0.00708094329045033	0.982122811863505	0.995980212202506
Merged-chr16-33932292-4	chr16	33931746	33932746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	34792.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	6.64354041300526	6.48644928749254	6.68050498620391	6.38879447103078	6.61043163401895	6.66013629568045	-0.0721144644329942	0.787484371782148	0.94877064431094
Merged-chr16-52031494-4	chr16	52030923	52031923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033238)	promoter-TSS (NM_001033238)	-126.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	7.07936167083097	7.19965622973977	7.08643622026062	7.05330318014955	7.30596436649812	6.87872613249091	-0.0324125131137791	0.899074862417313	0.976456276294408
Merged-chr11-110369839-2	chr11	110369339	110370339	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29263.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.73126440451074	4.98346965095602	4.36141125160048	4.99799763907565	5.21986547296757	5.09686944050939	0.823591866924612	0.0568442276664396	0.307396417762347
Merged-chr14-105431754-4	chr14	105431253	105432253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 1 of 2)	intron (NR_045859, intron 1 of 2)	4194.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	3.43574452381788	3.22790909593023	3.39174670937431	3.54600118700118	3.63339865077637	3.87191039505734	1.21536881558333	0.0405004791676899	0.250766770799973
Merged-chr11-72779521-4	chr11	72778993	72779993	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024926, intron 3 of 3)	intron (NM_001024926, intron 3 of 3)	16346.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	3.82448741749024	3.49854325318065	3.8052595399224	3.86793560860933	4.04686879911132	3.60411653022045	0.469064346655261	0.40901279704577	0.782473112145764
Merged-chr2-90474207-2	chr2	90473707	90474707	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 2 of 23)	intron (NM_008982, intron 2 of 23)	4967.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.02828549376479	3.28314927009008	3.17822094362818	3.0810773512927	3.09071960420578	3.35967734183712	0.0377164278260178	0.954075215464378	0.989495550016789
Merged-chr16-92865592-4	chr16	92865099	92866099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39525.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.77323676197349	6.24792053143833	6.50922147849033	6.40794700442433	5.7214571484788	6.44647652262235	-0.496832763017695	0.153862252395284	0.522977732354242
Merged-chr9-96035572-3	chr9	96035073	96036073	+	919.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311130, intron 33 of 41)	intron (NM_001311130, intron 33 of 41)	80813.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	3.55957989718712	3.4455343555	3.67415632488196	3.4812680001149	3.56665981515123	3.48028709745194	-0.161242200591167	0.777553495469907	0.945196073791966
Merged-chr15-102471775-4	chr15	102471271	102472271	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174073, intron 1 of 12)	intron (NM_001174073, intron 1 of 12)	1139.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	6.5518334608373	6.89910370174085	6.34272441325572	6.97344610861495	7.28907884285317	6.87909399638975	0.673686668087119	0.0223175479488193	0.173558436239841
Merged-chr2-129183980-4	chr2	129183479	129184479	+	690.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3306.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	3.89937594492532	3.49564791006472	3.88497833337237	3.82940810446613	3.98428344472529	3.80328506525705	0.348035163003513	0.528011703860056	0.850335859569968
Merged-chr5-32746436-4	chr5	32745942	32746942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-100.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	7.9139505052972	8.17821248526689	7.88102216363585	7.92177649470038	8.02475111714451	8.01406426247195	-0.0211749081697547	0.924032124470497	0.98287748869349
Merged-chr16-92692325-4	chr16	92691787	92692787	+	874.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	5042.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.52535101425576	4.49757939360636	4.21844449590811	4.31869237379228	4.02412131192224	4.58758489196808	-0.282330115653322	0.561470819736619	0.865407801976397
Merged-chr1-132347161-2	chr1	132346661	132347661	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	20787.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	3.376761889594	3.47181969816431	3.96968594081187	3.19571206717967	2.9769615652919	3.36886992946014	-1.74358206968311	0.0107341005182025	0.10561227810318
Merged-chr13-21750103-2	chr13	21749603	21750603	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178211)	TTS (NM_178211)	450.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	5.24213898387058	4.97420723321158	5.25432476035653	5.57382743589414	5.53891346323567	5.89893515563663	0.998406235499838	0.00487819453485878	0.0602216778112107
Merged-chr1-172148715-4	chr1	172148244	172149244	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357204, intron 1 of 13)	intron (NM_001357204, intron 1 of 13)	729.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	8.24729428129429	8.6917840950164	8.19662523424907	8.19758986600117	8.47864870186446	8.19875059080567	-0.141740186501252	0.56703509303051	0.867742628008279
Merged-chr17-86972052-4	chr17	86971572	86972572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8961.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.15860989359393	7.1567645721484	6.69759127952534	7.25383936704805	7.32474747467124	6.9025520379092	0.224603461118846	0.420351640852571	0.789584525478281
Merged-chr9-86467174-4	chr9	86466627	86467627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177208)	promoter-TSS (NM_177208)	-27.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	6.46446018903186	6.48780789589622	6.10778064288277	6.68862667724693	6.38342813073233	6.09841010907784	0.0751511221260183	0.809637199574071	0.954749848816598
Merged-chr13-37462289-4	chr13	37461771	37462771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116926.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.77983813876793	5.69719494094234	5.56964959768327	5.62013173774372	5.55716849192892	5.74018201445603	-0.105807632896334	0.738763205123274	0.934096291817064
Merged-chr17-10704325-3	chr17	10703821	10704821	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	L1MEf|LINE|L1	135870.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.58158575960382	4.78339389616347	4.45489756190482	3.45256878217694	3.45872323955659	3.67825171466293	-3.73169855297541	1.9829007079629e-09	2.072778920957e-07
Merged-chr16-50437363-2	chr16	50436863	50437863	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4897.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.67220701411006	4.79501244001478	4.66731954565233	4.68937152528533	4.46457911421166	4.61202733229018	-0.308160422208164	0.454167546882087	0.810100393169515
Merged-chr17-29114095-3	chr17	29113579	29114579	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20310.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	2.28026097545453	2.20584627531262	2.48815324135985	1.98369998660222	1.9362134351634	1.97379828990475	-3.32535436258803	0.00365272925191402	1
Merged-chr4-155248435-1	chr4	155247935	155248935	+	545.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-1531.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	3.04892893491001	2.78826309884152	2.94007481739626	3.11561849379556	2.79864525473967	3.01339893671087	0.232247496358907	0.74324286148167	0.93555555344166
Merged-chr1-136618777-4	chr1	136618294	136619294	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6107.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.68366229336756	3.37770208200987	3.88602536258192	3.27645467819956	3.38597397798415	3.76990194894789	-0.605536197160525	0.335753846965103	0.725879995869482
Merged-chr12-84615940-2	chr12	84615440	84616440	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 1 of 18)	B1_Mur3|SINE|Alu	1526.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	5.57536654180933	5.84805692816067	5.63638111420766	5.46898442904553	5.49243727512127	5.4394891719569	-0.425978979859775	0.191613423818174	0.578301406204667
Merged-chr1-55086173-2	chr1	55085673	55086673	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 2 of 11)	B2_Mm1t|SINE|B2	1759.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	3.64085353016885	3.73590882175737	3.9453751562714	3.64191074441146	3.49712873324975	3.44851218974911	-0.831420376990991	0.142909929395934	0.50455063667587
Merged-chr16-21787823-4	chr16	21787301	21788301	+	980.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023737)	promoter-TSS (NM_023737)	33.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	5.3155520232488	5.60442459758485	5.52369404221528	5.5007146283442	5.40850850770019	5.10305983731447	-0.248299633298707	0.484241004638154	0.826755140042123
Merged-chr8-46882133-1	chr8	46881633	46882633	+	719.0	f0_balb.idr	Intergenic	Intergenic	-104754.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.87396054263724	6.00188483393727	5.78222900076141	5.95753539618039	6.18726336302093	6.08350843656312	0.326575734512245	0.274352356176434	0.671721462492876
Merged-chr2-150673976-4	chr2	150673454	150674454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5714.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	7.28860516576582	7.03451863425048	6.69697649372338	6.96175491826294	7.1059335792346	6.34979621356915	-0.27222104122003	0.400681061483047	0.776924744715187
Merged-chr19-6334916-4	chr19	6334415	6335415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168488)	promoter-TSS (NM_001168488)	-64.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	5.56184111564256	5.76129699068936	5.68613728864804	5.44781623291241	5.54689775139871	5.43791470787522	-0.355230535436718	0.272159223828145	0.66953956602346
Merged-chr3-14578663-4	chr3	14578181	14579181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007892)	promoter-TSS (NM_007892)	10.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	6.50815165364194	6.37085367209511	6.15441099838341	5.94724660075022	5.84535802333962	6.23567833780657	-0.595853495222064	0.0486628284435721	0.280023280023011
Merged-chr8-66437026-4	chr8	66436534	66437534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49496.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.41774818522349	5.55971377681198	5.91019538686673	5.66289556567868	5.36048016008754	5.71228410261577	-0.103856797015126	0.767985430931232	0.942754893315356
Merged-chr7-49004537-3	chr7	49004000	49005000	+	917.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	45427.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.10161679966717	4.13322279433629	4.11260779002219	4.33639293104228	4.51589606295915	4.03013556350723	0.563679476895668	0.244305892049198	0.641614718441551
Merged-chr9-120564655-6	chr9	120564153	120565153	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178676, intron 10 of 10)	B4|SINE|B4	-6864.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	4.44043172962837	4.80718855854769	4.64265622470555	4.52214523390517	4.47258918514901	4.41369500352407	-0.413324365355486	0.339522871202564	0.729313720985741
Merged-chr1-180418097-2	chr1	180417597	180418597	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	65407.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	3.47440752200382	3.45445070682233	3.42692283094519	3.21681372236242	3.35317177064643	3.14695703074173	-0.804731502100069	0.194484960984863	0.581818675258088
Merged-chr14-31424127-2	chr14	31423627	31424627	+	907.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	MTD|LTR|ERVL-MaLR	-6450.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.11248839674636	6.61822103891196	6.37308299923582	6.23241754833256	6.24121930005249	6.08008986617857	-0.325513366382633	0.27997170747153	0.677712405642304
Merged-chr13-34277883-4	chr13	34277412	34278412	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	67270.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	6.29407871893747	6.26196046677384	6.18220670277117	6.39379786932842	6.2702084277839	6.32412348734827	0.129254794023756	0.635407409145321	0.89649427032154
Merged-chr8-33384346-3	chr8	33383822	33384822	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122822, intron 1 of 33)	intron (NM_001122822, intron 1 of 33)	1205.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	5.04673523296777	5.4206804256945	5.72390940845515	5.7651236489487	5.49831243590674	5.83275206354635	0.535918690271805	0.149658599194723	0.516117590626348
Merged-chr2-124706279-2	chr2	124705779	124706779	+	884.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52698.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.6277145591921	6.61561041469253	6.86939712505477	6.74131279871865	6.90505171393245	6.82709438196943	0.199540461627618	0.437906848127305	0.800328435665455
Merged-chr9-119970325-2	chr9	119969825	119970825	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153287)	TTS (NM_153287)	12698.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	2.45950207493074	2.28429338903908	2.44746545850654	2.44941368218677	2.37389190411291	2.64567930670151	0.565314522477543	0.490570253283596	1
Merged-chr17-35810237-2	chr17	35809737	35810737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11476.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	4.42847558716111	3.75352369806124	3.98150817533972	4.20611462619844	4.02129343544691	4.14962668985211	0.0930918072002505	0.862911713021104	0.968145160359081
Merged-chr18-3010342-1	chr18	3009842	3010842	+	812.0	f0_balb.idr	Intergenic	Intergenic	113070.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.44281519394988	3.50292301930856	3.42067121053813	2.99700600935034	3.14242883368402	3.92181077194418	-0.108422853392644	0.882957031248163	0.973343819056613
Merged-chr6-142991766-4	chr6	142991253	142992253	+	925.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27301.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	4.31973235377453	4.21228057342097	4.53280302223182	3.93920694091727	3.90865017546612	4.32063649865664	-0.828230114194752	0.0950506190682377	0.411104001609782
Merged-chr12-76941996-2	chr12	76941496	76942496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	B1_Mus1|SINE|Alu	20252.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.23163974765568	4.22196138809467	4.28614134057503	3.85562427019478	4.21370361702214	3.9778946838259	-0.593242438572587	0.231145689120765	0.62693690919749
Merged-chr7-101848712-2	chr7	101848212	101849212	+	654.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	-3381.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	4.89693547341369	4.79880797457571	5.30154403844946	5.35490025154868	5.13297951646921	5.42154129018497	0.619924155456831	0.109472345295453	0.442140321684498
Merged-chr16-87698918-4	chr16	87698417	87699417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-37.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	7.96110400663936	7.58246096450667	7.52620781181185	7.88831627507344	7.16419462530736	7.31045125415735	-0.306349297068091	0.30245033809033	0.699118224399262
Merged-chr4-9645475-4	chr4	9644901	9645901	+	943.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	MTC|LTR|ERVL-MaLR	-1684.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.94830180072959	3.76886282810483	3.92881916755356	4.50104933548203	4.45255070253244	4.42343380615043	1.64398210947638	0.000607430830488295	0.0122588174977614
Merged-chr1-176816970-4	chr1	176816470	176817470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	MLTR11B|LTR|ERVK	2310.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	6.30084827883643	6.09839739664484	6.14152439146267	6.17380720032757	5.84227145229525	6.04832659687985	-0.27715296030259	0.351825544261534	0.739473733111637
Merged-chr9-123941553-4	chr9	123941063	123942063	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27129.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.66989539809118	6.5435917276602	6.79090128359595	6.31724797171964	6.20673497520135	6.62240966216975	-0.459431233472524	0.10299369792559	0.427924106528119
Merged-chr10-8886141-4	chr10	8885683	8886683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175155)	promoter-TSS (NM_175155)	-113.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.91159267473095	8.99428901198124	8.671397956094	8.72624359070377	8.73798647258362	8.40625829963317	-0.320084154808839	0.151800433313821	0.519559477404319
Merged-chr7-139246206-2	chr7	139245704	139246704	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2278.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.12480341424387	2.70406520081482	2.96836449290614	2.67862887958864	2.71541839376612	2.86199340308629	-0.974688236299122	0.19417071288527	0.581338395140958
Merged-chr18-4267062-2	chr18	4266562	4267562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	85891.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.73918745811554	6.91470299371125	6.69654195485424	6.32473496244965	6.10807134241969	6.69310428494075	-0.650201601595435	0.0267699082136165	0.194783206310326
Merged-chr8-47673612-4	chr8	47673126	47674126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	1533.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	8.28986553230179	7.96417860884565	7.78028127815654	8.16683266346339	7.9424660471984	7.9284578527807	-0.0246587908606878	0.919882441183461	0.982120898917633
Merged-chr11-118349080-4	chr11	118348585	118349585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	6326.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.63346270275574	5.58613350821145	6.14104788171419	5.74972328310291	5.80084558568613	5.85680180806841	0.00813358925653008	0.980736478985998	0.995560772285461
Merged-chr15-79546146-4	chr15	79545672	79546672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	CpG	387.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	8.56724577658221	8.83337560151873	8.45641161689622	8.36649571631043	8.6891910838448	8.46692311081113	-0.158983794117369	0.48707009725979	0.828231456470534
Merged-chr7-35269851-4	chr7	35269319	35270319	+	960.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B2|LTR|ERVK	48621.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	2.85177676110325	2.8369179634408	2.82991929674511	2.86479627676232	2.69240314990723	3.29636667254583	0.617798465021515	0.408869093363212	0.782383854304252
Merged-chr16-10480016-4	chr16	10479498	10480498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302619)	promoter-TSS (NM_001302619)	-74.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.84432088306016	4.96778583073553	4.95659146322847	5.0763650464509	5.15538743747395	5.02161949436389	0.362143307419759	0.326517758197648	0.71871566647558
Merged-chr11-106155945-2	chr11	106155445	106156445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356459)	TTS (NM_001356459)	3982.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	4.06353820802444	3.63087698737931	4.0879022776714	4.07661337332453	4.13910847427213	4.20101362547427	0.583921634676703	0.262424051822464	0.660429498352951
Merged-chr4-122848215-4	chr4	122847688	122848688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 4 of 8)	intron (NM_008917, intron 4 of 8)	11961.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	7.06704523267947	7.27482854825347	6.93134860707921	6.98794746962671	7.32656524893855	6.88601890862742	-0.0199688569949649	0.941020783618825	0.986888338850358
Merged-chr11-70445645-4	chr11	70445140	70446140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6291.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	6.8534860473303	6.62194097065285	6.8690613319394	6.69087301437467	7.13638580545128	7.07419711706043	0.310707738744542	0.254597765294119	0.651643384054634
Merged-chr12-113222226-4	chr12	113221753	113222753	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36350.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	3.73901462931725	3.31124108870923	3.28908060265513	3.04346248907382	3.11291942654421	3.3617578413439	-1.18207463126555	0.0764669466052517	0.364225868288384
Merged-chr9-21149242-2	chr9	21148742	21149742	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	RSINE1|SINE|B4	664.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	4.66678725012347	5.01875456058285	4.89838139866545	4.89378912080237	5.12852789123593	5.19985448124192	0.449657311875659	0.252635856889676	0.649949738121886
Merged-chr7-24901384-3	chr7	24900869	24901869	+	632.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007655, intron 4 of 4)	intron (NM_007655, intron 4 of 4)	-1617.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	3.72489921731433	3.60278040473477	4.19844333570419	3.67967573509869	3.57597616192551	4.14221383110079	-0.13887663004892	0.816537140137459	0.956731571947764
Merged-chr18-61224466-4	chr18	61223975	61224975	+	977.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	3976.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	4.75295254959669	4.86431519468598	5.14082811088525	5.23555912251812	5.29589843821819	5.57585842637066	0.939499487161734	0.0131082773786637	0.121490652339442
Merged-chr9-51008630-4	chr9	51008120	51009120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	CpG	453.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	8.18457570573583	8.37913957854894	7.94778400578472	8.14350184840406	8.03533674668661	8.20272204032074	-0.0888428163468096	0.697961203706636	0.920123929290929
Merged-chr4-137389168-4	chr4	137388666	137389666	+	892.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20625.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	7.3047841993706	7.37189215505148	7.38479693473654	7.29823653994713	7.61528598763719	7.19987975944562	0.0606166556931673	0.806015043332237	0.954102910475772
Merged-chr1-9813105-3	chr1	9812602	9813602	+	894.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	RSINE1|SINE|B4	14972.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.00655087979448	3.86009523660726	4.30189935286197	4.20773886501034	4.07628554151968	4.10367207357255	0.206786377909528	0.678225379904871	0.913379457468915
Merged-chr10-77615028-2	chr10	77614523	77615523	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301672, intron 3 of 3)	B1_Mus1|SINE|Alu	1314.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	3.66400795711231	3.76290489989443	3.66411090164258	3.61726631080858	3.75200013296933	3.88521823029764	0.173043007471711	0.74823391843183	0.936902544466317
Merged-chr6-108168124-3	chr6	108167627	108168627	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	17456.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	4.55006659175637	4.57722345528053	4.75474047381202	5.60207026048007	5.56398266696351	5.41322349957675	1.94384598247395	1.63451065563801e-07	1.10214232280655e-05
Merged-chr11-118423455-4	chr11	118422930	118423930	+	857.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4312.0	NM_001267592	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	4.12586414100211	4.12877614779108	4.11030353705938	4.20293313452928	4.04818538877641	4.17868567345596	0.0516003226855034	0.912748327955866	0.98044179637442
Merged-chr18-76241864-4	chr18	76241374	76242374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010754, exon 1 of 11)	5' UTR (NM_010754, exon 1 of 11)	173.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	7.74411519246588	7.49759598004363	7.61939776138766	8.08492496743047	7.49730595974638	7.47662294958963	0.14176515964485	0.602532989972411	0.882349532183277
Merged-chr8-10946204-4	chr8	10945663	10946663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17706.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	4.77497292235888	4.51806990100938	4.39287321286231	4.53754702430942	4.21466806721489	4.46116077627175	-0.435146929951084	0.336254585708236	0.726311051846196
Merged-chr15-84995713-2	chr15	84995184	84996184	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-7713.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	7.0056800758914	6.73074906024602	6.7373768054411	7.27335449756193	6.91816853973833	6.8887415214924	0.315778147073408	0.242037559347356	0.639104507431288
Merged-chr3-130795003-4	chr3	130794483	130795483	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64585.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	4.46249505876729	4.56695052614084	5.06422792095385	4.38342842565161	4.38223373936606	4.94103011612154	-0.304933239433149	0.527475709903888	0.849959310385428
Merged-chr5-32863616-4	chr5	32863093	32864093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170567)	promoter-TSS (NM_001170567)	-128.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	5.33451148199276	5.53466784034103	5.67311815547751	5.58460931809871	5.34681862557716	5.80768274066271	0.125181658155127	0.720349050789913	0.928142072321482
Merged-chr10-8011253-3	chr10	8010749	8011749	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55126.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.77560081904135	4.52156078021242	4.5873760957741	4.21202451163483	4.00076042558141	4.31499975781174	-1.21717498025027	0.00786967860803609	0.0850526324999957
Merged-chr2-27667990-4	chr2	27667474	27668474	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9227.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.3563257387509	3.14737062979712	3.13853247779779	3.08792370337649	3.03233340543215	2.96488871615991	-0.836342963328324	0.207817522130615	0.59868364609575
Merged-chr17-15021694-3	chr17	15021191	15022191	+	985.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123372, intron 11 of 11)	intron (NM_001123372, intron 11 of 11)	-11507.0	NM_198104	21647.0	Mm.440445	NM_011560	ENSMUSG00000079707	Tcte3	D17Leh117c|LC2|Tcte-3|Tctex-2|Tctex-4|Tctex2|Tctex4	t-complex-associated testis expressed 3	protein-coding	2.6022620533946	2.5798604457139	2.75430932022254	3.62730172814916	3.57617155845471	3.29374672598148	6.94304281969275	8.10393235931426e-08	5.92541303825853e-06
Merged-chr16-25958868-4	chr16	25958372	25959372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146912.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	4.0772179497228	3.91767463587693	4.05411823937764	3.75389354945475	3.70497094370707	3.67234624555738	-0.982086106039481	0.0597938722672045	0.316577673699736
Merged-chr9-50856486-3	chr9	50856017	50857017	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	-407.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	4.4374024329364	4.55897724987017	4.72472863202352	5.59151595840736	5.19434127360658	5.19408553099177	1.69173944679478	2.4462998137471e-05	0.000866915310486664
Merged-chr1-144294203-3	chr1	144293684	144294684	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45080.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	2.6214753184685	2.5854739227259	2.93464170979864	2.64033470720769	2.7866971884203	2.83317389506792	0.201918469482994	0.78974217477486	0.949306100353451
Merged-chr3-15847432-2	chr3	15846942	15847942	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173459, intron 1 of 5)	Lx2|LINE|L1	1045.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	3.59162134415346	3.31669149824797	3.55296064633649	3.67760488718754	3.44464967183233	3.45867193120234	0.148699901644553	0.800807868883156	0.952698252180801
Merged-chr6-24645524-4	chr6	24645028	24646028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	19467.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	5.85037538046933	5.77452474944457	5.87023030811888	5.64397024548032	5.58601851630895	5.78532834873313	-0.29758607839857	0.334502171456906	0.724994313317866
Merged-chr3-67463824-4	chr3	67463312	67464312	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016753)	promoter-TSS (NM_016753)	95.0	NM_016753	17035.0	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	4.40887305937487	4.38573182828525	4.57832605793769	4.6696986438445	4.55864678625313	4.83164171181518	0.561707703786154	0.184922741936853	0.568974693864642
Merged-chr2-30077615-4	chr2	30077112	30078112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1086.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	4.92023133540652	4.69795057691114	5.42558568850863	4.95143972684913	4.93358902142302	4.97362029531368	-0.183764712784358	0.662566271864109	0.906804932599005
Merged-chr11-69325388-2	chr11	69324888	69325888	+	793.416687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-870.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	7.30998811206216	7.37350948783334	7.38779419275131	7.47050495511864	8.05697039783141	7.56846015412135	0.551502092740708	0.0359977421503594	0.233279265354067
Merged-chr10-5208424-3	chr10	5207886	5208886	+	862.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 86 of 145)	intron (NM_001347711, intron 86 of 145)	-13679.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	3.92930666947678	3.83102925598646	3.67158909812703	3.54413220063356	3.91140345681656	3.51420832194845	-0.446968807389814	0.441087077928885	0.802258247414482
Merged-chr17-71182459-4	chr17	71181973	71182973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1059.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.10103959534244	6.35736053274895	6.08906854932201	5.79067895160888	6.22733903382582	6.19237011954921	-0.180472205736139	0.561794233327863	0.865580593452079
Merged-chr3-27691649-4	chr3	27691158	27692158	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18794.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	5.54614817127722	5.79225554785005	5.29985344043141	5.31898471520283	5.41976589715656	5.22862009055056	-0.465888515857181	0.189102342417245	0.574725243182631
Merged-chr6-54718980-4	chr6	54718478	54719478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37354.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.28547171508052	3.7081654421008	3.40719152952283	3.29067831751838	3.27129058724856	3.3658323388646	-0.681413365606811	0.27254976785745	0.669787090105518
Merged-chr9-40710222-3	chr9	40709784	40710784	+	977.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	B3A|SINE|B2	24320.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	6.16588873207791	6.06882160054337	6.18860204728197	4.16794426826112	3.88842349312172	4.36603249041672	-5.14844474109332	2.51778448939611e-21	2.11615971508759e-18
Merged-chr19-11330436-2	chr19	11329936	11330936	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 2 of 6)	intron (NM_027836, intron 2 of 6)	4259.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	6.74734009546342	6.50363057529787	6.64661547459473	6.41121487495322	6.5473459327354	6.57297631210465	-0.198878239534933	0.453436842620638	0.809761744660326
Merged-chr16-93711744-4	chr16	93711234	93712234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-173.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	5.93596296722109	5.52964131161142	5.85543546256331	5.92326984662677	5.65696062166356	5.71421600065854	-0.024126270949464	0.941579059281313	0.987024728112131
Merged-chr14-22020832-7	chr14	22020307	22021307	+	930.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 1 of 6)	intron (NM_028275, intron 1 of 6)	1095.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	5.61737512450014	5.84764545727852	5.46424909584315	5.77580664406597	6.14007883597136	6.05044335184281	0.600010451146726	0.0680185235874953	0.341313314011992
Merged-chr4-63590128-4	chr4	63589630	63590630	+	910.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	10634.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	5.31939496146549	5.37256565679387	5.59083558058615	5.25284643590118	5.48187773120163	5.30628521030589	-0.128708150436686	0.709984788999	0.924166640014037
Merged-chr3-88606526-2	chr3	88606026	88607026	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9681.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.20076292261041	4.55077819569177	4.72409220179401	4.87850117001658	4.51089533872696	4.97620047057359	-0.146666055659333	0.747627652309424	0.936653971666454
Merged-chr13-60601267-2	chr13	60600767	60601767	+	614.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-680.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.56263469631278	4.46902885951835	4.21412377713499	4.47598589483955	4.29119480735327	4.55086965396297	0.00899351353154619	0.984133695380191	0.996480724840222
Merged-chr16-23999607-4	chr16	23999089	24000089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10737.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	3.58983721004306	3.70019016208023	3.5786625670371	3.5621363897261	3.32891046678278	3.48491857307744	-0.61389524010374	0.286133614952691	0.683463892237707
Merged-chr12-34725334-4	chr12	34724867	34725867	+	889.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	L2|LINE|L2	191728.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.60820131001232	4.74547215189179	4.28716768415075	4.6224227304937	4.41881077485151	4.53950434995829	-0.113899868815808	0.797932605567234	0.95189069883926
Merged-chr15-88489498-2	chr15	88488998	88489998	+	776.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-110804.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	5.72125577315814	5.48873683945872	5.93219883674715	5.7225446123168	5.67043414071711	5.65097189655822	-0.0606331360326445	0.852994692389727	0.965595746053526
Merged-chr17-15827262-2	chr17	15826762	15827762	+	745.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-676.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.32768267225891	3.24450058915906	3.3319191615549	3.31437002937982	3.50409011887824	3.45837859414747	0.505174256049992	0.398702428435626	0.775357741025815
Merged-chr5-135537486-4	chr5	135536989	135537989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	7633.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	3.91835085264157	3.66233846957555	4.11160931551375	3.5225377293394	3.68466624964477	3.35959536149813	-1.22873474541993	0.0420232531192632	0.256655229414831
Merged-chr14-75057067-4	chr14	75056562	75057562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	41035.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.77487588736102	6.82008109306129	6.7442255964977	6.85038253678322	6.91707480654126	7.05626598346862	0.243624350105677	0.324044742015303	0.717287790132387
Merged-chr18-5821168-2	chr18	5820668	5821668	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228521.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.42680716831414	4.143295684058	4.7211734884188	5.09892171337101	5.13220101000501	4.90072499585792	1.4358633959348	0.000961690401979561	0.017479321749217
Merged-chr13-67331304-4	chr13	67330801	67331801	+	976.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177622, intron 1 of 4)	ID_B1|SINE|B4	1259.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	4.23022564282088	4.12917513237599	4.27307652364942	4.47884487696684	4.2360694638271	4.46819336942793	0.495284187644256	0.277894339133579	0.675164452541077
Merged-chr12-3299190-2	chr12	3298690	3299690	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B3|SINE|B2	10779.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	4.75768222483625	4.60999836651563	4.83916011168431	4.64371878774921	4.91485063761629	5.0717288904298	0.344947057731378	0.397804447511156	0.774593722474986
Merged-chr4-35224239-4	chr4	35223733	35224733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	1647.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	8.06060002451567	8.11717853145824	7.77527437189571	8.18228046736856	8.4027360318711	7.93320684388487	0.276171447431875	0.257708066595518	0.655122723295615
Merged-chr2-122611819-4	chr2	122611301	122612301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	-524.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	7.71043098239257	8.08308145574715	7.7734940080383	7.71129782660963	8.18007315473472	7.52541021151249	-0.0321744569146417	0.907013127782411	0.978868492078838
Merged-chr15-74957086-4	chr15	74956540	74957540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008529, intron 1 of 3)	intron (NM_008529, intron 1 of 3)	1934.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	7.33686471669179	7.60507700868759	7.2311426291646	7.67101745863609	7.88439008439007	7.32498176476729	0.364162473027059	0.172441793427922	0.550991447912638
Merged-chr7-141466676-2	chr7	141466176	141467176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	-686.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	5.38366663070311	5.3392457850255	5.27856397449933	5.07776888717411	5.13276667260397	5.11058424414957	-0.468312639909363	0.178331621854585	0.559402033136986
Merged-chr2-157426332-3	chr2	157425831	157426831	+	981.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	2038.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.55195681053333	5.34650734156288	5.34957067365176	5.05855539831029	4.79637410186898	5.0151546789681	-0.969517841381093	0.00783252118574327	0.0848162965673251
Merged-chr13-14613130-4	chr13	14612632	14613632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029271)	promoter-TSS (NM_029271)	-95.0	NM_029271	75398.0	Mm.36511	NM_029271	ENSMUSG00000015672	Mrpl32	0610033O15Rik	mitochondrial ribosomal protein L32	protein-coding	7.62420993817837	8.15019025226316	7.44725458660491	7.5429424684958	7.73053820673073	7.34626156228946	-0.332154184809752	0.242482155214054	0.639628936439607
Merged-chr5-24454464-4	chr5	24453970	24454970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	2293.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	4.76776384531299	4.91483743662035	5.12650652972374	4.51109448638337	4.536789392579	4.89651829361665	-0.661476031612375	0.114310115221366	0.451579153051663
Merged-chr5-140108086-4	chr5	140107577	140108577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	66841.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	6.92257328979662	7.06191312541855	6.81449422840193	6.81742379532672	7.09703375092897	6.82713327251558	-0.021212469425448	0.934555091298834	0.985727536128156
Merged-chr10-59964935-5	chr10	59964360	59965360	+	994.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13090.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.7712954939885	4.41366762610274	4.50292790267671	4.81937498753561	4.47648802003521	4.52737183770896	0.0987539044470774	0.822924472473964	0.958199570473596
Merged-chr1-125560476-4	chr1	125559971	125560971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356294)	promoter-TSS (NM_001356294)	-124.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	7.60088967625003	7.37670376796554	7.51346495663469	7.74917779935734	7.89406258057348	7.24480061001357	0.24600975236448	0.356836746596601	0.743460467581681
Merged-chr9-64018072-5	chr9	64017528	64018528	+	673.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	(TCTG)n|Simple_repeat|Simple_repeat	4031.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.56208575216541	4.11093535367087	4.62408145359408	4.63861410329641	4.52956835991653	4.65112499575035	0.393957974144621	0.3876279294653	0.767699601678856
Merged-chr13-9430133-3	chr13	9429610	9430610	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153585.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.28930316725568	6.38865337277476	5.9425555637726	6.37793113660527	6.75334607557677	5.89888481402433	0.290813557897614	0.40572037208669	0.780396697117115
Merged-chr17-67246693-4	chr17	67246270	67247270	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	107689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.53532402208261	5.68253017536832	5.27790525106509	6.32946799551214	6.47058557798516	6.43592192614043	1.54359458172698	1.04322377113179e-06	5.61115472193496e-05
Merged-chr5-66129002-3	chr5	66128513	66129513	+	773.8555299999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	Lx9|LINE|L1	21965.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.16349778556398	3.68366977812999	4.19491363652954	4.06838220227907	4.26991710736088	4.34795594252462	0.570099261841462	0.275002808730075	0.672401372506524
Merged-chr11-70506618-4	chr11	70506122	70507122	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029360, intron 1 of 4)	intron (NM_029360, intron 1 of 4)	1348.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	3.57976356798502	3.46409159438888	3.4301721255973	3.4872966722473	3.31732950268559	3.66060877039396	-0.0294507370690678	0.960188831625037	0.990336440060193
Merged-chr13-49197020-4	chr13	49196510	49197510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013610)	TTS (NM_013610)	9463.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.92862552875513	7.58792655048496	7.78481332812764	7.66903818595694	7.73662430901229	7.55941444691588	-0.16361806646575	0.481087124879974	0.824933692849553
Merged-chr5-64612237-3	chr5	64611702	64612702	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1503.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.59031769280817	3.37914192294372	3.55146314505419	3.28767642817221	3.4807492062207	3.34758472594848	-0.488226025622712	0.415206008505684	0.786190894237809
Merged-chr5-135689828-4	chr5	135689343	135690343	+	794.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	698.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	7.07673605054343	7.18000431392735	6.89874301216283	7.02676471575198	7.03769685075631	6.49982467184143	-0.261339545915076	0.352235587912554	0.739888459678721
Merged-chr7-34918645-4	chr7	34918138	34919138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	6231.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	6.02888589159827	5.94328067425446	5.95638966085164	5.93910334514645	5.55341823997304	5.603103358125	-0.477402505447892	0.131968139748088	0.485811837904656
Merged-chr18-53905838-3	chr18	53905326	53906326	+	774.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	MIR|SINE|MIR	43713.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.17455594145466	4.07146798862505	4.36527413165298	3.93097807327965	4.01064446445839	3.88000658134933	-0.742729316450669	0.134460600849421	0.490248031745282
Merged-chr9-65313081-2	chr9	65312581	65313581	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011802, intron 6 of 13)	intron (NM_011802, intron 6 of 13)	18821.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	3.0704251652335	2.9323116394665	2.93291335391111	2.94706348791284	2.70528907403675	3.06486780327093	-0.35276070928593	0.620783497389046	0.890327890975882
Merged-chr14-47367462-3	chr14	47366846	47367846	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6514.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.69072433019543	4.72622563942013	4.88785798921637	4.19628491089924	4.09392013171815	4.37601283465235	-1.40806374506074	0.00148855933326977	0.0245998103282445
Merged-chr9-40762478-4	chr9	40761940	40762940	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	B1_Mus1|SINE|Alu	-38833.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.62013905583305	5.60956378829738	5.73791694756109	4.59438912258834	4.73168190448167	4.94253015007975	-1.86925388236786	4.61629340679929e-07	2.73779431071244e-05
Merged-chr5-144126182-4	chr5	144125687	144126687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081109, intron 1 of 13)	intron (NM_001081109, intron 1 of 13)	25751.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	3.3753531820066	3.02001688785203	3.20941090809197	3.29943561865358	2.81545677742732	3.10499535995923	-0.522911586311895	0.462290590968307	0.815159087955196
Merged-chr8-83747063-3	chr8	83746502	83747502	+	806.533325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5691.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	5.90683213950307	5.8526088860441	6.18193743847161	5.82782104023411	6.03482885814486	6.2609928685	0.117730856847375	0.707639072225415	0.923504801393744
Merged-chr6-122638766-5	chr6	122638229	122639229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12305.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.74439136937695	6.59288830420617	6.70408690491225	7.83948711615277	8.00865854165472	7.32294530449943	1.61736874932497	4.07985512000023e-09	4.06072469886338e-07
Merged-chr11-100612346-4	chr11	100611850	100612850	+	756.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	MLTR14|LTR|ERV1	7818.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	5.74556867889139	5.53406900199266	5.81268694720781	5.63849053532237	6.02749064817491	5.92166399402648	0.325291027302929	0.316472873068855	0.710557877168509
Merged-chr11-32585575-2	chr11	32585075	32586075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52309.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.94779291325233	3.82696628460086	4.1847884729267	3.83190879229328	3.82368517488453	3.93453748700726	-0.3852934025118	0.455117968716681	0.810787589461485
Merged-chr10-25426727-4	chr10	25426229	25427229	+	980.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	18361.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.55250387811419	3.5784173449847	3.37296677115306	3.59484170074704	3.38957555954643	3.44515949571735	-0.11755641131619	0.840875560723542	0.962832831784718
Merged-chr11-76479312-4	chr11	76478780	76479780	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-10815.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.96905759362158	7.94574003407207	7.79082383162383	7.60497011576774	7.92149541537564	7.45321739111142	-0.317933565292119	0.191799430971234	0.578614861877813
Merged-chr3-61362346-2	chr3	61361846	61362846	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2161.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.4332512616377	3.37061666330623	3.53813892620677	3.22534566892009	3.42323034475632	3.1558706668033	-0.638752226665253	0.307613296408845	0.703744388869902
Merged-chr4-140988804-4	chr4	140988329	140989329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	1956.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	7.67575095682096	7.79564461673371	7.72536582811929	7.80754246784667	8.04424787661216	7.67317845129259	0.179727584833103	0.435369379939726	0.799001636162842
Merged-chr11-6267833-4	chr11	6267348	6268348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026538)	promoter-TSS (NM_026538)	-119.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	7.07948529818324	7.30651060278605	7.35915341612966	7.45671562874355	7.69859563366315	7.1950671504636	0.333576128129951	0.198682640510063	0.58715673929398
Merged-chr17-27173866-4	chr17	27173357	27174357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6093.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	3.80959406891944	4.06939738672578	4.22320167063203	4.17189133643745	3.73941597509926	4.20399217444802	0.0245614960234773	0.963361414776689	0.991114723419703
Merged-chr5-130248075-4	chr5	130247570	130248570	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 4 of 4)	intron (NM_023248, intron 4 of 4)	7460.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	4.82630131254193	4.60966500246388	4.64386696914685	5.07669127169965	4.54449844860305	4.75148561453241	0.24868850016176	0.562559347775722	0.865745518569294
Merged-chr2-94438841-2	chr2	94438341	94439341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-655.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	2.86254093069352	2.96785151331677	2.86351413645146	2.68420735695795	2.52461045374712	2.81498738005065	-1.23278093241625	0.104359232119729	0.430999237027056
Merged-chr11-50237569-2	chr11	50237069	50238069	+	983.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313968, intron 1 of 4)	intron (NM_001313968, intron 1 of 4)	963.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	4.65945901378416	5.13052496812276	5.45646544328713	5.12033874649136	5.11249939206762	5.03259758899656	-0.0470468572416993	0.910568465696645	0.979885578167044
Merged-chr6-31500890-2	chr6	31500390	31501390	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 17 of 17)	L1MA4|LINE|L1	63047.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	3.377743645779	3.42219922880137	3.76070256337613	3.24649516682639	3.01862794238527	3.5398727123417	-0.956053893643034	0.148817187677582	0.51474266265846
Merged-chr6-32588488-3	chr6	32587991	32588991	+	985.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	-299.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.39544226762912	3.80593802650461	3.91907861464889	3.97618762635502	3.55064515930587	3.93901152885418	-0.721788429067389	0.208486638803305	0.599376576082142
Merged-chr18-67988870-3	chr18	67988375	67989375	+	842.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	55702.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.14862934337245	3.88735622700048	3.97896398696983	3.59486924936234	3.42291061392623	3.85450830079578	-1.27405245613715	0.0231842573243759	0.178127025249
Merged-chr19-60890719-1	chr19	60890219	60891219	+	757.0	f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	970.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.49293821054576	4.8005407270233	4.92138022613845	4.85544326780802	4.53982170497337	4.98545787083891	0.119828489721686	0.781103080105409	0.946145838976425
Merged-chr1-138159137-4	chr1	138158661	138159661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	15965.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	7.95178282234868	8.12921977778344	7.76424335835267	7.84550320765292	8.18373846879031	7.89644077639498	0.0381337962304239	0.873396708419216	0.97040331531529
Merged-chr8-27264356-4	chr8	27263884	27264884	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	4057.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	3.95294186328668	3.60678108708992	4.09912594630885	4.32047899533044	4.10061944483925	4.21284013331758	0.931769414298936	0.0744943968619496	0.359168488474279
Merged-chr3-133092471-4	chr3	133091978	133092978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026231)	promoter-TSS (NM_026231)	-439.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	8.41854731507888	8.75290054121708	8.49670835713557	8.36604054964965	8.75075689180498	8.20690614320694	-0.13363060926205	0.590102844002887	0.877100187719802
Merged-chr5-114927955-2	chr5	114927454	114928454	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	4714.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	6.23001504598932	5.77381206954077	5.45540283919731	6.24404583803324	6.03758239682832	5.45335980613009	0.159647910251145	0.688462840503226	0.9172299553909
Merged-chr2-103583475-4	chr2	103582966	103583966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	17156.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	3.96623206174059	3.12735606813448	3.56273895830069	3.58409983138005	3.40573165949671	3.46698853952512	-0.405199982414845	0.547007758474481	0.859168905101902
Merged-chr5-96244723-4	chr5	96244226	96245226	+	875.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053158, intron 7 of 8)	L1ME1|LINE|L1	34611.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	3.55662915007674	3.58985078881671	3.65080375096233	3.46527356999923	3.52917042519574	3.61693064029158	-0.219630051741256	0.694316077835502	0.919210273513843
Merged-chr15-81105062-4	chr15	81104560	81105560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153049)	promoter-TSS (NM_153049)	-13.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.72935991157681	7.89929996183566	7.60509702931947	7.7089438756906	8.02851920815431	7.54196370771801	0.0441847509572917	0.859885790134828	0.967435965660262
Merged-chr9-47642883-4	chr9	47642391	47643391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	112539.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.0781947438836	6.44059401847974	6.6330461607835	6.80175412195187	6.72870629457541	6.51556544301748	-0.0928694137625704	0.758169791056445	0.940104678746179
Merged-chr2-11739023-2	chr2	11738523	11739523	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	33311.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	3.96301934695194	3.74792375520224	3.88019763278833	3.72188848107565	3.77266090459252	4.17615221631854	0.0942532171791786	0.861174678221956	0.967789299492425
Merged-chr19-42091773-1	chr19	42091273	42092273	+	594.0	f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	1338.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	7.1713651776101	6.98397362544064	6.93375876638147	7.33804751104082	7.31202146339162	6.99156684375465	0.291943462277821	0.24936751676353	0.646297222702376
Merged-chr2-14333799-2	chr2	14333299	14334299	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54599.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	2.47834807061805	2.62986288272111	2.78415246305912	2.54191499184908	2.3395274417433	2.55303965274444	-0.921562903472118	0.257067700233328	1
Merged-chr3-116615867-4	chr3	116615373	116616373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289568, intron 9 of 17)	ORR1E|LTR|ERVL-MaLR	-1286.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	4.87609379786451	4.81895408141455	4.60527903577842	4.60938290593184	4.56447335540863	5.00327376259728	-0.11711303954936	0.78228803819094	0.946484752418558
Merged-chr5-108433035-2	chr5	108432535	108433535	+	749.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007507)	TTS (NM_007507)	1364.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	2.07405158160545	2.3563128285656	2.44471518353271	2.43119458529221	2.36661391130827	2.51894054121331	0.893397733337302	0.324204090477461	1
Merged-chr17-84391096-3	chr17	84390606	84391606	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 25 of 37)	ORR1E|LTR|ERVL-MaLR	75102.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	3.07197365107375	2.99033524011371	2.90415814781425	2.97875435884962	2.85126656092559	3.09677983756746	-0.0945612452543551	0.890221407929801	0.974472301756451
Merged-chr11-55147628-4	chr11	55147115	55148115	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	4091.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	4.92551654864527	5.03639117217453	5.66030386891861	4.8198076545997	4.85001578351627	4.88343717746462	-0.818868925271976	0.0529749208426855	0.294884748025032
Merged-chr11-117831892-2	chr11	117831392	117832392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	B1_Mur3|SINE|Alu	-5878.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	7.23097426686033	6.8935987318958	7.01134017995085	7.20528359167909	7.37145778056196	7.16038675417373	0.299410767535867	0.232824948937691	0.629112760641923
Merged-chr13-67516199-1	chr13	67515699	67516699	+	738.200012	f0_c57.idr	3' UTR (NM_133228, exon 4 of 4)	3' UTR (NM_133228, exon 4 of 4)	10032.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	2.95063511878068	2.91462086320453	3.07313390070419	3.54877871117795	3.67286686623765	3.50105618107474	2.71249506975869	8.00123719132037e-05	0.00234838428294669
Merged-chr10-117747148-3	chr10	117746658	117747658	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-800.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	6.24398872255514	6.76783405940774	6.51534551812238	7.18352003814114	7.27000729793973	7.12809105812912	1.02834846659813	0.000198181448140472	0.00497594506242378
Merged-chr1-131052784-7	chr1	131052297	131053297	+	998.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008551)	TTS (NM_008551)	32952.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.10332158561412	5.89663207243815	5.74872076756285	6.61886360623921	6.69639443409543	6.62020776666418	1.17732571267345	3.98377500209649e-05	0.00130374239656904
Merged-chr8-123015262-1	chr8	123014762	123015762	+	555.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	27022.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.69496451627273	4.58155060951906	4.39274565434359	4.39349557207571	4.5084562510184	4.32186474245119	-0.380843556696382	0.385524406713051	0.766589753710737
Merged-chr17-48266750-3	chr17	48266261	48267261	+	780.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	RLTR22_Mur|LTR|ERVK	2466.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.36157196276992	5.79627433197935	5.8090954759959	5.83669443960684	5.59878434209987	5.63872872175603	0.050068913397525	0.883141812435773	0.973347392063704
Merged-chr19-6995445-3	chr19	6994952	6995952	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	585.0	NM_026675	68323.0	Mm.49041	NM_026675	ENSMUSG00000037349	Nudt22	0610006K04Rik|AI851793|AW545547	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding	3.72437375047894	4.03598517123673	3.94279576494314	3.95160699450851	3.96995128119535	3.75352753797033	-0.0201749490214404	0.969356983072322	0.993120354697684
Merged-chr2-157425415-2	chr2	157424915	157425915	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1122.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.40281032461559	4.54056008534829	4.4289109480338	4.32834068988154	4.13616280446211	3.85070686136296	-0.890737726863979	0.0692654508864372	0.344435917102623
Merged-chr7-105627346-2	chr7	105626911	105627911	+	709.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	B1_Mur4|SINE|Alu	6160.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	2.7989663667986	2.77910729512509	2.82847750687592	2.54416738745745	2.54984744265594	2.95857260733665	-0.578956858039436	0.455280003427526	0.810850567748235
Merged-chr10-94569126-4	chr10	94568594	94569594	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6163.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.61601290153267	3.49894937441579	3.47430450870809	3.16559460624512	3.18083336622998	3.49135636035537	-0.994190809632913	0.107592725208934	0.438142978475259
Merged-chr11-44395789-3	chr11	44395266	44396266	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4297.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.41678132483922	3.50656972101038	3.55974521450856	3.41744477814298	3.26354295110312	3.52501871294665	-0.357227283430223	0.545016139732319	0.858001414574823
Merged-chr2-163433998-3	chr2	163433514	163434514	+	838.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4453.0	NM_144891	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	2.57963210567742	2.4701906694315	2.96655484767457	2.55971373293625	2.49409965279709	2.75424740227999	-0.438064303977697	0.587615767845346	0.876017619062143
Merged-chr19-32887434-3	chr19	32886951	32887951	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129874.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.38335334692261	3.37133430432569	3.46364928477987	3.15374686966809	3.20192639353824	3.37310893623755	-0.657417393721431	0.282852862870047	0.68075273348424
Merged-chr8-84104193-2	chr8	84103693	84104693	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172502, intron 1 of 12)	intron (NM_172502, intron 1 of 12)	604.0	NM_001357322	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	5.21190148894042	5.00642180860459	5.169733981871	5.2213230943582	5.04221232214577	4.83367413066977	-0.170079090006162	0.652611712432937	0.902986290245403
Merged-chr4-72195333-4	chr4	72194836	72195836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	5557.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	4.62798863553371	4.42942992306091	4.65323075896631	4.27635454838484	4.26787295358823	4.43862194010351	-0.629775338229653	0.151330989665542	0.518614043990544
Merged-chr17-74341475-7	chr17	74340970	74341970	+	909.414307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357738, intron 1 of 15)	intron (NM_001357738, intron 1 of 15)	2483.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	5.81606606019123	5.64411553205886	5.59056402684846	6.90235167653977	7.04295172541799	6.37811438643872	1.86548617840637	4.75476854475656e-09	4.67101276354313e-07
Merged-chr15-67414690-4	chr15	67414200	67415200	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187931.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.83317083904911	3.98915237148431	4.06876549937312	3.91480936586961	3.70581112201023	4.13619129483036	-0.132977053321012	0.800019530625588	0.952408432552781
Merged-chr12-72086584-2	chr12	72086084	72087084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205067, intron 1 of 6)	B1_Mus2|SINE|Alu	745.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	5.98937928171763	6.09906914698577	6.2240345045368	5.99214418115317	6.21447860819474	5.85552963531531	-0.102521021485613	0.734620802583686	0.932557032428793
Merged-chr11-85141853-2	chr11	85141353	85142353	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	3.92614132405143	3.80633769819922	3.86664409385798	3.9062180011248	3.93890501406087	4.12549194178255	0.36997654832408	0.463698028821666	0.816038286358001
Merged-chr9-70760241-2	chr9	70759741	70760741	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	81259.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	6.42031616314861	6.5560138570081	6.69964845774886	6.18944666800224	6.5641559658219	6.42338294548554	-0.243625391699621	0.39021282201099	0.769547406615622
Merged-chr13-45457544-3	chr13	45457003	45458003	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49941.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	5.2625980545947	5.43295343048298	5.17442691350227	4.44695671339209	4.42705680095871	4.46194195698178	-1.9503513897225	1.2361527454795e-06	6.53065381878463e-05
Merged-chr11-107581439-2	chr11	107580947	107581947	+	598.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_198298, intron 4 of 31)	intron (NM_198298, intron 4 of 31)	33487.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	2.25475350846657	2.19194173798904	2.478934518614	2.66022092360785	2.61283866615309	2.68013731993421	2.33691076227287	0.00933280862523845	1
Merged-chr10-77536922-4	chr10	77536409	77537409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	MTD|LTR|ERVL-MaLR	6561.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	7.86730673547281	7.64399047122377	7.70122138014047	7.77095770042531	7.93829933520745	7.67587264948099	0.0907669182833436	0.690103771835364	0.917664185493038
Merged-chr9-22314195-4	chr9	22313698	22314698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6560.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	6.92778837082045	6.72450282394022	6.60956738227178	6.90159876082583	7.16986335344335	6.80111152113353	0.323213281827622	0.229768059287257	0.62546343040449
Merged-chr7-137410655-4	chr7	137410130	137411130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	CpG	126.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	7.99182943800214	8.0820855328995	7.85309605701967	8.10841336687519	8.32899749533233	7.80661591211929	0.177106394099468	0.468347262841953	0.818547995183628
Merged-chr11-106736454-4	chr11	106735941	106736941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-14785.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	7.02840289396493	6.98514267200456	6.99594955501182	6.95007394111645	7.03196256120752	6.97222553787496	-0.0248912165819249	0.91653980822769	0.981312252061916
Merged-chr12-75658686-4	chr12	75658204	75659204	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028203, intron 1 of 1)	MTC|LTR|ERVL-MaLR	10833.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	3.49254632626603	3.53061457177422	3.84497663257186	3.24768299875626	3.57407513441431	3.40541619362612	-0.735058521905409	0.231501021836356	0.62745071742539
Merged-chr6-131246848-2	chr6	131246339	131247339	+	742.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 1 of 7)	RSINE1|SINE|B4	523.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	6.91428688229599	7.2089808854201	6.83364041850008	7.07736287250327	7.3278942335994	6.96635056257354	0.208773244247292	0.434031028733424	0.79814689082248
Merged-chr10-121459270-4	chr10	121458784	121459784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16966.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.47642485395021	7.46801315966607	7.11473463991439	7.38314932496413	7.53895345731489	7.38878924078211	0.102261157122144	0.675329558650723	0.912152821313949
Merged-chr6-34906937-4	chr6	34906418	34907418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3913.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	6.83046184276095	6.4959753926554	6.18400955313609	5.99719062809779	5.73199791856976	5.65770081949455	-1.23662343976268	0.000154103397650378	0.00406809502274512
Merged-chr11-69417698-4	chr11	69417225	69418225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4050.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.2912215604555	8.10644260850273	7.79449412668002	8.16830894266647	8.3479692750563	7.63263457205654	0.0110989978428082	0.968401095327437	0.992776669007643
Merged-chr9-40733545-4	chr9	40733080	40734080	+	984.708374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	47616.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.02439758794496	4.97514792901193	5.07727692489251	3.65685878251997	3.31583939612899	3.91605544001992	-4.96991385983418	1.60579646218952e-11	2.50685013181736e-09
Merged-chr7-131802226-3	chr7	131801718	131802718	+	714.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164242.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	3.66481622236291	3.77581547183229	3.49292771118221	3.78030125938605	3.3465816075384	3.83021159170829	0.0342926166383495	0.954286361244881	0.989522830661899
Merged-chr11-21031992-4	chr11	21031491	21032491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59333.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.28733008826199	5.3728293194273	5.58357803597185	5.48864706470555	5.98649550122299	5.75059423846911	0.662447096567418	0.056033100958563	0.304791937279212
Merged-chr13-51845192-3	chr13	51844704	51845704	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1471.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.90283175003692	5.48319195698615	5.58254858453905	6.1471981578184	6.00545596642326	5.70353669046027	0.532426408674034	0.113928881875824	0.450859089500984
Merged-chr17-56268211-2	chr17	56267711	56268711	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8556.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	3.88503574588601	3.48537605693286	3.63415182815629	3.98377532176347	3.65570756601367	3.91264577441235	0.558571873735623	0.3243205958223	0.717422983792312
Merged-chr10-121584355-2	chr10	121583855	121584855	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	2439.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	4.25045328761541	4.27427847045256	4.27586964509695	4.47292382983987	4.27792180848609	4.70712261254133	0.570033171582765	0.21159224888794	0.603945120913907
Merged-chr2-60843729-2	chr2	60843229	60844229	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	37709.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.16480580685607	6.15710199589242	6.12175217716043	5.87110871536919	6.38815563598779	6.20336320609215	0.0511487109326266	0.86701889870979	0.969257436168173
Merged-chr2-71389146-4	chr2	71388650	71389650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-110.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	8.50744831000337	8.75696099325881	8.2554139955305	8.44857638115945	8.8305190270977	8.25130326845534	0.01706689416977	0.94786293492517	0.988008807662239
Merged-chr5-135487746-2	chr5	135487246	135488246	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	57376.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.82181154984924	5.06032676303707	5.15366780556778	4.91033205330231	5.05793120852469	4.98189049815038	-0.0534784002826832	0.888290827410257	0.97401529899353
Merged-chr1-136612057-2	chr1	136611557	136612557	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12844.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.85028934794586	3.92559738338624	3.92378483292518	4.31590379461395	3.98904136524532	4.04379968119918	0.66418467775713	0.184960227415143	0.569057888806034
Merged-chr10-79840855-3	chr10	79840360	79841360	+	929.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	ZP3AR|Satellite|Satellite	-13572.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	4.97966003682298	5.26221424370967	5.5605757943071	5.15365807908361	5.34937629862069	5.37483250721705	0.0365628327651428	0.922777753780061	0.982621045978137
Merged-chr1-80758597-4	chr1	80758133	80759133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175291)	promoter-TSS (NM_175291)	-80.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.65236971846918	5.64770363657887	5.41437867515476	5.85727141954305	5.299940877277	5.67975285698236	0.0808684668950497	0.819632042668517	0.957285308539088
Merged-chr3-116189554-4	chr3	116189034	116190034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59846.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	7.37853779048902	7.78398552937392	7.37034145146806	7.41676830747423	7.70089597597726	7.59195862056615	0.0653967773995634	0.796962438829827	0.951592845296142
Merged-chr17-33746294-4	chr17	33745789	33746789	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008997, exon 5 of 5)	3' UTR (NM_008997, exon 5 of 5)	14197.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	3.04245451138785	2.78492519521852	2.90240657616609	2.96057747629354	2.70643886317319	3.03477231500329	-0.0577468237295725	0.936285616135557	0.986037792257163
Merged-chr8-68206058-2	chr8	68205557	68206557	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70471.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.96794376808551	6.10906558058083	5.71189454094957	5.93951167489884	6.10730480603751	6.2212155110305	0.239920790303624	0.437815479181687	0.800249333122812
Merged-chr2-21202063-4	chr2	21201557	21202557	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	3308.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.41190381282951	3.0607427833978	3.28004102452564	3.16962652205311	3.20319174669092	3.23804476052009	-0.232847592959565	0.716871010712144	0.926895034641765
Merged-chr5-108629772-4	chr5	108629255	108630255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282052)	promoter-TSS (NM_001282052)	22.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	8.46811448705645	8.61272367111212	8.29082628041412	8.3221866267192	8.35223110928761	8.32791845570807	-0.187202459842659	0.375996216650094	0.758951282467405
Merged-chr10-128674868-2	chr10	128674368	128675368	+	920.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-950.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	4.66569778511174	5.11265277909007	5.05347498670919	4.98704627735957	5.29532996867172	5.18410084484726	0.439364955784178	0.266774032403955	0.664205077446686
Merged-chr18-36194036-4	chr18	36193534	36194534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	3126.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	5.59388014135634	5.56732531550542	5.8189590223249	5.48158386396487	5.60489501716898	5.80853150401252	-0.0457932287366705	0.888763591474305	0.974158138411807
Merged-chr12-55486429-3	chr12	55485926	55486926	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6221.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.44728939336739	5.10461961049096	5.2651755645686	5.32933913486453	5.10127401584583	5.26517099514031	-0.102948790756609	0.776012781915042	0.94480820353868
Merged-chr13-51637295-2	chr13	51636795	51637795	+	686.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-7937.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	4.23214427156248	4.35626608566355	4.41601622929373	4.36362512036327	4.23090179732588	4.71325105305922	0.273349503035111	0.555524360479325	0.863275207521966
Merged-chr1-125455852-2	chr1	125455352	125456352	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-20125.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.01970366901779	3.29502801690749	2.97643222039148	3.04759030963291	2.96892395953162	3.11034926650262	-0.314636598440598	0.642318278436696	0.899398873915991
Merged-chr11-70683720-4	chr11	70683215	70684215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178116, intron 5 of 22)	intron (NM_178116, intron 5 of 22)	4390.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	6.24031355523224	5.66995987924125	6.16900583962643	6.25348738291267	5.98427595003928	5.83773030084474	-0.0114697211226524	0.972898794890329	0.993897323428832
Merged-chr17-35076205-2	chr17	35075705	35076705	+	701.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027366)	promoter-TSS (NM_027366)	-737.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	2.89368050646661	2.91653924650254	3.07410176255419	2.97953591631023	3.01927798947698	3.36169270246273	0.744796386398567	0.277262381139995	0.674475901473372
Merged-chr7-35127918-4	chr7	35127417	35128417	+	851.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8624.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.12680552360374	3.14784446805359	3.08299351155759	2.8448919091613	2.8439367206959	3.26605123706969	-0.580490763434334	0.408320110028017	0.781982251625038
Merged-chr12-24708615-4	chr12	24708088	24709088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009104, exon 2 of 10)	exon (NM_009104, exon 2 of 10)	334.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	4.29393414589824	4.51872778409287	4.73453460772454	4.59322764298584	4.51666246833241	4.79919153030404	0.280621946596274	0.523075548037346	0.847982949045848
Merged-chr4-11004496-2	chr4	11003996	11004996	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	3123.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.54026728239546	3.13268432096443	3.23028843488295	3.54728961053303	3.71978569899839	3.64564357418353	1.1928589793967	0.0576179288338335	0.309987884547111
Merged-chr2-165914493-4	chr2	165914012	165915012	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29674.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.34596057197318	2.97303456951548	2.97736946779949	3.13204573808916	2.88983914690815	3.11239917502618	-0.305850772319549	0.661229317084859	0.906313423756683
Merged-chr9-78532666-4	chr9	78532150	78533150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50926.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.60201567254271	8.79337815908463	8.36837849310135	8.51335603451495	8.95175863815689	8.22327319525176	0.00498258692530936	0.98525740584849	0.996873682039026
Merged-chr18-65692344-4	chr18	65691845	65692845	+	951.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5923.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.18501928155854	7.32796084593678	6.98729322038692	7.27485713249543	7.53288988020118	7.31190035342272	0.299239374896759	0.229274000930226	0.624749364077556
Merged-chr1-36309787-4	chr1	36309322	36310322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	2089.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	4.43260881112952	4.21806810179229	4.19590801071229	4.06996485634666	3.74790185977628	4.07568114670504	-0.939073891899656	0.0606059187332475	0.318847830422108
Merged-chr15-28412199-3	chr15	28411719	28412719	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	B3|SINE|B2	208453.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	3.9920641126036	3.94071720114047	4.11427001876785	4.13317196338727	3.85033150633371	4.39340614085586	0.3455038340511	0.500946522674496	0.83533412964393
Merged-chr10-19939419-4	chr10	19938918	19939918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	4892.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.69948260808289	6.57177268540574	6.5507339923581	6.3153703593781	6.20876796383664	6.3750373618538	-0.514336327654695	0.0537201728485438	0.297164482275072
Merged-chr19-46553774-3	chr19	46553266	46554266	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 2 of 6)	intron (NM_001355233, intron 2 of 6)	19416.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	3.1633601083321	3.05385171213974	3.00140566739484	3.29225234757068	3.25460211934074	3.31256407523753	0.882008535396665	0.169038191756987	0.545661750425338
Merged-chr4-128806178-4	chr4	128805696	128806696	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-84.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	6.16084167772026	5.75079653177094	6.3380413637854	6.47373936480278	5.49373893569712	5.70429238563487	-0.22774639472811	0.573369616405565	0.870124731750396
Merged-chr1-84883138-4	chr1	84882631	84883631	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	intron (NM_025386, intron 2 of 3)	43290.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	3.26446271704147	3.33635283569766	3.31948096008326	3.40275925915313	3.1193365091114	3.21787073561801	-0.230959493318035	0.71135493665731	0.924661173262022
Merged-chr1-69689182-4	chr1	69688693	69689693	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3233.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	3.05357871670069	3.23964874316354	3.0930162445792	2.98934798427146	2.80693392654518	2.79116605857821	-1.27893591009445	0.0710178786724407	0.34959803872546
Merged-chr2-83676671-2	chr2	83676166	83677166	+	783.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	32088.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	3.06373343444047	3.26121610778365	3.19139699921388	2.89101968269971	2.78133202088988	3.09249588857349	-1.19971785397526	0.0856253765556741	0.387507686959889
Merged-chr2-164928573-2	chr2	164928072	164929072	+	868.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-16822.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	2.36791604814043	2.44684791520302	2.14259567317524	2.35604671061052	2.19862740031513	2.48698249416947	0.142465388835335	0.874307782628966	1
Merged-chr8-71542824-4	chr8	71542325	71543325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-105.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	6.5165119622603	6.44318969863266	6.63870749518588	6.44754581913057	6.53696010485138	6.49533966298474	-0.0547523865100349	0.83495570904076	0.961434055314855
Merged-chr7-105639923-2	chr7	105639423	105640423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360053)	promoter-TSS (NM_001360053)	493.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	6.81191926119534	7.08976516200092	6.4824219305082	6.64480073273922	6.78036832060764	6.50435991551745	-0.2741586871086	0.346317172926105	0.734586502621477
Merged-chr7-28053659-3	chr7	28053172	28054172	+	930.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3580.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	3.89117058351777	4.11406700750332	3.61275632681108	3.59341972125497	3.82342545185484	3.79511010843715	-0.4924981580442	0.380980335047789	0.762943872639242
Merged-chr1-106818583-4	chr1	106818092	106819092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21867.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	4.67131427246845	5.45502739034935	4.56438041961331	5.01937573831837	5.2703804533394	4.89472321627488	0.208325080774948	0.662511993841914	0.906804932599005
Merged-chr15-88750713-3	chr15	88750244	88751244	+	796.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-967.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	6.54141868079963	6.787053196195	6.41657683895972	6.6520938885151	6.71723314686269	6.49487863720347	0.0493613794944502	0.857164882781769	0.966695131396664
Merged-chr12-41349601-4	chr12	41349118	41350118	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	L1MA9|LINE|L1	136439.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	5.60638776003944	5.95161768471932	5.56091363540611	5.62941800421355	5.89808610543947	5.91176589706054	0.164328594849471	0.620301739901316	0.89005211387168
Merged-chr1-88008399-4	chr1	88007908	88008908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 1 of 27)	CpG	143.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	6.75995353566126	6.9406283679381	7.22502530221798	6.82602035607475	6.51734535473353	6.63602438962807	-0.493941695479747	0.0748611950656215	0.360171937408491
Merged-chr15-36606724-4	chr15	36606194	36607194	+	941.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2279.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.53395818672666	4.6298620165937	4.88660284010939	5.07712319573608	5.23178180654748	4.95212454981101	0.934071414273136	0.0183407958256357	0.15277500957987
Merged-chr6-116416386-3	chr6	116415883	116416883	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 7 of 13)	ORR1E|LTR|ERVL-MaLR	44795.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	3.22461868322457	3.46446616756652	3.41686102809326	3.15169679941266	2.99752754376964	3.32514648267125	-0.897002212786536	0.165935685290273	0.541089092560861
Merged-chr12-102440834-3	chr12	102440327	102441327	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.81038291106105	6.60179276873536	6.64050448051168	7.28095379648966	7.06533915389344	6.9478560871238	0.645088516280082	0.0124458905059781	0.117255169522353
Merged-chr1-170937265-4	chr1	170936763	170937763	+	882.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-9680.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	4.65484836893799	4.44420362161749	4.35260942148195	4.11282150394616	4.10222681140833	4.46285271377076	-0.711042662768147	0.128407568593849	0.479277664179651
Merged-chr1-33907060-3	chr1	33906539	33907539	+	921.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	CpG	582.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.93699089983956	5.95153284197127	5.69899950194594	5.86534326724091	6.33874390097875	6.1064106087685	0.432592476293048	0.173715765396004	0.55292812026605
Merged-chr9-40521330-4	chr9	40520828	40521828	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	10055.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.0406118727955	3.14432389429018	3.11093935206927	2.91619722144861	2.820462276166	3.06741999402775	-0.788583243455373	0.247025705921254	0.644045601901006
Merged-chr4-116075255-7	chr4	116074687	116075687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	-82.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	8.27258751776019	8.28463345883541	8.02152649497495	8.33186244084976	8.34765026410614	8.19080907211393	0.127544217909841	0.553489743068634	0.862256710473478
Merged-chr2-79757233-3	chr2	79756720	79757720	+	660.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 3 of 4)	ORR1A4|LTR|ERVL-MaLR	49440.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	3.40869089562826	3.4917027104463	3.41454565172105	3.4924077090558	3.32567164063688	3.2536483803774	-0.29693806634446	0.620198303931021	0.890026802452616
Merged-chr2-34778644-4	chr2	34778129	34779129	+	980.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145522)	TTS (NM_145522)	6539.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	3.78473693135106	3.55668765969599	4.22378566789115	3.67081021312178	3.40119169172639	3.85900295875486	-0.734907642801129	0.225886632851322	0.620790596836024
Merged-chr9-101157480-2	chr9	101156980	101157980	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161362, intron 6 of 13)	Lx7|LINE|L1	41593.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	2.43760371546492	2.57910512470808	2.58563546414267	2.41430503000463	2.26709804689327	2.4705398650543	-0.970365367018568	0.239671947284705	1
Merged-chr15-73148364-4	chr15	73147876	73148876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36571.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	6.47909763900303	6.19789165771463	5.84648438570928	6.10221041838992	6.1634070815609	5.93502574352951	-0.230334363339021	0.472854458096957	0.820550293768681
Merged-chr5-110285325-2	chr5	110284825	110285825	+	963.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011132)	promoter-TSS (NM_011132)	843.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	3.44940215676892	3.57184991993013	3.65621893392644	3.54988881847488	3.77316613061155	3.45325455796699	0.176762273744375	0.759679221964143	0.940561686474309
Merged-chr14-99200645-2	chr14	99200145	99201145	+	833.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 14 of 17)	intron (NM_029320, intron 14 of 17)	-98046.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	2.82691219317923	2.63167238219423	2.76376833318529	2.76874773637515	2.43356717424064	2.58288779923675	-0.788069211594348	0.319373395351976	1
Merged-chr6-136451085-4	chr6	136450588	136451588	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35519.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	5.77551341648511	5.94825593263838	5.64568598643057	6.10278505449088	6.03729725368827	6.08288517231173	0.467504837030026	0.121528483817029	0.466344042784002
Merged-chr2-4890604-3	chr2	4890105	4891105	+	882.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	9041.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	3.72656778531679	3.90434967081755	3.47844167092685	3.71435533965087	3.62048382373175	3.77000953247909	-0.0840394325443928	0.881862594580538	0.972938155767876
Merged-chr15-34067252-4	chr15	34066771	34067771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-15448.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	4.71910263393136	4.69505958383183	5.09550757220649	4.68916400646116	4.65558742542514	5.18843041864421	0.0357813311719191	0.934298135863101	0.985707838096286
Merged-chr9-57563193-2	chr9	57562693	57563693	+	810.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	2249.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	4.56876215556338	4.49654968412924	4.48948216179591	4.51326865959089	4.76417410509408	4.96970770416818	0.561715597105771	0.186443639790253	0.57102482257315
Merged-chr2-167833744-4	chr2	167833242	167834242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98585.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.78897611781724	5.36581710881121	5.68146320559607	5.94023914902281	5.20229790068165	5.39903424136124	-0.127077775962763	0.744421928560753	0.935982277711273
Merged-chr13-100015679-4	chr13	100015157	100016157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-18.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	4.56146791655118	4.85230091860697	4.58984510730279	4.4659980093616	4.84511778907799	4.61516391821558	-0.0457430598718293	0.915721231078085	0.981200822249461
Merged-chr1-156460462-2	chr1	156459962	156460962	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	PB1D7|SINE|Alu	13866.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	6.48856795289762	6.45013103815299	6.29063081166443	6.24334241976338	6.52159116122931	5.82709223508091	-0.278738409035485	0.382758267600023	0.764157347532576
Merged-chr7-80270075-2	chr7	80269575	80270575	+	981.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178070, exon 1 of 23)	exon (NM_178070, exon 1 of 23)	420.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	6.0910360797033	6.02896458155962	6.1016015759693	6.02346204174553	5.77250968241709	5.78275784283267	-0.362424703159509	0.224125734685895	0.618970262998538
Merged-chr6-134432906-3	chr6	134432390	134433390	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	18462.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.55014046300105	4.19339173879527	4.27664229626429	4.44462025231072	4.35925769457699	4.43420123574442	0.148731583776472	0.743305755986085	0.935574897804958
Merged-chr10-125323063-2	chr10	125322563	125323563	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	Lx9|LINE|L1	5900.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.86837770097135	4.99333496141681	4.81091674350073	4.65261922741935	4.76127054383335	4.8386533314028	-0.336403233664495	0.390351156394276	0.769585097056154
Merged-chr9-44194155-3	chr9	44193678	44194678	+	781.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	39868.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.46110090042187	5.59228657614475	5.6934507586257	5.42729012777434	5.27816653368154	5.48647341378828	-0.360682516067721	0.279011734612676	0.676468683859472
Merged-chr14-21745292-4	chr14	21744779	21745779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 3 of 7)	MER91C|DNA|hAT-Tip100	-2400.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	4.22408244549226	3.94461258534893	3.89642443787076	4.09440766711085	3.96463230266014	3.68960076914979	-0.301650594988379	0.571965197508631	0.869773807126863
Merged-chr19-6241530-4	chr19	6240990	6241990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-178.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	7.81627890330818	7.87395666890151	7.54261677238914	7.67420884454325	7.79384250191833	7.55906840966851	-0.107493994253499	0.645737804004767	0.900721425246251
Merged-chr3-123385993-4	chr3	123385552	123386552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-62.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	6.94453012026279	7.17628654542345	6.88474690997355	7.67085720196784	7.83092965358852	7.15625533320309	0.860083335051278	0.00215778886237584	0.032698105201342
Merged-chr5-148509402-4	chr5	148508922	148509922	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	42251.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.2655130880505	5.28381208861259	5.53116276715076	5.19580954320139	5.19125234496143	5.17572838943424	-0.33794827502642	0.334611696826421	0.725082622186825
Merged-chr12-24572170-4	chr12	24571655	24572655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161406)	promoter-TSS (NM_001161406)	-132.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	4.97174854422769	4.98501040716206	4.42738577235927	4.69749678703869	4.61350092474578	4.83642274095411	-0.273425018050989	0.529442978261004	0.850904712036958
Merged-chr7-88482242-3	chr7	88481730	88482730	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028238, intron 2 of 2)	intron (NM_028238, intron 2 of 2)	51957.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	3.81839875813196	3.87371861543891	3.98502672506051	3.72221247874165	3.59549250649149	3.59682538509418	-0.830823699452042	0.121197565421855	0.465629652951414
Merged-chr5-129020085-4	chr5	129019580	129020580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009391)	promoter-TSS (NM_009391)	-76.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	6.96860922646716	7.02156583614106	7.18474488010171	7.17692297905405	6.61642913455325	6.8931461653929	-0.220764358888793	0.42494171121767	0.792848465017231
Merged-chr2-91968179-3	chr2	91967679	91968679	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4616.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	3.61509367942492	3.50045866027645	3.44397720012612	3.49980914540261	3.46652690972472	3.51537794589682	-0.120197627480275	0.83329273164497	0.961059817796062
Merged-chr4-53092753-3	chr4	53092278	53093278	+	724.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 9 of 50)	exon (NM_013454, exon 9 of 50)	67117.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.72723849229887	2.7109404958811	2.78587382560647	2.50503973764932	2.57217182237217	2.85814243852519	-0.502390239551595	0.512542989543916	0.842032105019173
Merged-chr14-31582854-2	chr14	31582354	31583354	+	716.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5471.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	3.04203222780708	3.02557071810616	3.09862832777727	3.50892636336418	2.96748344675961	3.23156086582656	0.84688319909347	0.213791273228955	0.606900020244801
Merged-chr7-34389727-4	chr7	34389244	34390244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-39.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	8.01686280333359	8.16891383507059	8.13039434286593	8.25024736099885	7.99232050053187	8.00928229200412	-0.0234373611158849	0.914454938082879	0.980912729144991
Merged-chr14-54686811-4	chr14	54686291	54687291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023190, exon 1 of 19)	5' UTR (NM_023190, exon 1 of 19)	140.0	NM_001085473	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	7.62623353383412	7.98944454637005	7.66614860854387	7.89211930614659	7.94699625157902	7.65713590143395	0.0970363310139617	0.687690050120605	0.917193226920892
Merged-chr17-73942403-4	chr17	73941916	73942916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7780.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	9.00796694273351	9.23780389805469	8.36890964170647	8.71193444106247	9.07304915276543	8.28602881820747	-0.261317500357727	0.3991815103564	0.775712434823128
Merged-chr6-71196287-4	chr6	71195775	71196775	+	767.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3604.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	2.81054490552079	2.60681772387131	2.8077936685128	2.89378797976151	2.43445235722368	2.75835018326412	-0.1835243322586	0.818465768464308	0.956975045804917
Merged-chr2-145885375-3	chr2	145884879	145885879	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-17862.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.45423639400645	5.57303241531517	5.75342049385647	5.57367431547133	5.71718244597548	5.29702086377385	-0.0695633078533749	0.839573449843694	0.962784121274377
Merged-chr11-119259167-2	chr11	119258674	119259674	+	693.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	B4|SINE|B4	-8789.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	5.54437072340666	5.82431439546381	5.48090492694423	5.18021487997082	5.28290773153967	4.96199872441378	-0.919079723660205	0.0109390953259215	0.106990121825136
Merged-chr5-149284934-4	chr5	149284416	149285416	+	909.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 3 of 4)	MTD|LTR|ERVL-MaLR	19912.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.99759755544806	4.81421765168886	4.99320413541904	5.16232643698351	4.78401815939971	5.28219422277354	0.314146303418031	0.429629194007319	0.795827826691029
Merged-chr7-88242319-3	chr7	88241825	88242825	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35760.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.06766618023678	6.03941781058912	6.32286615978519	6.18546617219795	6.07926393679347	6.26858956343096	0.0577166490219347	0.842181060448372	0.963002495523594
Merged-chr10-80329364-3	chr10	80328901	80329901	+	901.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	72.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	2.95370492891851	2.70394680951248	2.54981338442063	2.67943714068541	2.50467132623955	2.93895956071468	-0.163783438816276	0.840270652462131	0.962819298477451
Merged-chr9-72110707-2	chr9	72110207	72111207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 2 of 14)	intron (NM_001253865, intron 2 of 14)	494.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	4.52781274491526	4.67873586397502	4.44349659319758	4.51604777046514	4.23911325560673	4.55308689974466	-0.314458339992623	0.476439475850396	0.82257619929543
Merged-chr3-88684511-2	chr3	88684011	88685011	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	5.11791564566588	5.46833650878056	5.72171373043981	5.45017977358526	5.76439183408369	5.46001560637748	0.238608681304847	0.517434891318823	0.844558003037655
Merged-chr4-154904672-4	chr4	154904176	154905176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-5633.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	3.03399760403836	3.04357370694088	3.11339221244928	2.97311870687428	3.0795096771022	3.29514400415811	0.244529291493783	0.71092602330584	0.924511716032697
Merged-chr17-80100067-4	chr17	80099565	80100565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27406.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	3.41733220104194	3.5225962009227	3.36846923033527	3.38936738113813	3.37759408142433	3.38309315001882	-0.222618902043243	0.70515717498328	0.92270290989203
Merged-chr3-98055976-4	chr3	98055450	98056450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	42412.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.79700219689748	5.53556291067568	5.5740425603371	5.26348155256279	5.31707131919624	5.23917060344332	-0.706670416902078	0.0360448237178925	0.233458254159107
Merged-chr11-100548825-2	chr11	100548325	100549325	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	3193.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	4.87444298130918	4.65636001042209	5.01159923916629	4.99992409800459	5.02226803319723	4.61278333718806	0.121869834844461	0.767728621812121	0.942686684331778
Merged-chr14-74909253-3	chr14	74908761	74909761	+	557.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	38616.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.76514925811431	3.91522972923298	3.91880660235548	3.54208095551547	3.70141527289239	3.93988553992066	-0.438762976118533	0.418842691248579	0.788755230826602
Merged-chr3-9885748-1	chr3	9885248	9886248	+	746.0	f1_balb.idr	Intergenic	Intergenic	-52069.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.7754481563081	5.49610051510131	5.82387911105348	6.1034643791956	6.27906037343309	6.29655776743743	0.925545547681499	0.00243494052682764	0.0359550188742279
Merged-chr11-100323780-4	chr11	100323270	100324270	+	948.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3821.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	5.15504150500481	5.21728976225736	5.56783846979959	5.24836941618762	5.04354546277293	5.525146516074	-0.0813441650769345	0.830252498825011	0.960219727001139
Merged-chr10-98883276-2	chr10	98882776	98883776	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31366.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.04562436703192	4.78865989854819	4.9787787957224	4.89333794800968	4.81247609105833	5.00856606987968	-0.0878843095306587	0.819724798894972	0.957288083214325
Merged-chr19-42752746-4	chr19	42752276	42753276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-1.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	7.87123985569848	8.19375375427392	8.08334662785106	7.87196647306871	8.10767739447459	7.7742247550749	-0.176422615279546	0.452595248889044	0.809456767794566
Merged-chr3-51415377-4	chr3	51414904	51415904	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-612.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	7.09461807642263	7.16498887741946	7.13197054323527	7.34130025917768	7.32073763011304	7.30809117652564	0.288572412351793	0.206270119267494	0.596855755513016
Merged-chr17-65884975-4	chr17	65884473	65885473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198949)	promoter-TSS (NM_001198949)	-50.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	6.98072709272413	7.20929176890791	6.77759312629296	6.88112186981348	6.95398154676933	6.88211469094041	-0.157648110500691	0.543125686056001	0.857492022946468
Merged-chr8-119423964-4	chr8	119423461	119424461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13201.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	5.31942810852916	5.24578827534243	4.80502364480745	4.81727751356972	4.49334649003812	4.57132010549003	-1.15691467540741	0.00578920203257656	0.0679514632143646
Merged-chr13-34089258-4	chr13	34088816	34089816	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 3 of 4)	intron (NR_046184, intron 3 of 4)	-11308.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	5.93884039687335	6.15694607702474	6.15162717954686	6.30102848803729	6.54316713928129	5.93197727364587	0.359431666998865	0.254639243380507	0.651698516338744
Merged-chr4-132380958-4	chr4	132380452	132381452	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-27266.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	4.76548882702895	4.76179314652231	4.99092100754489	5.09742656181326	5.20563872400517	5.18848977864813	0.715167965621703	0.0549724123855562	0.301265698156681
Merged-chr17-56162398-4	chr17	56161898	56162898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025566)	promoter-TSS (NM_025566)	-93.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	4.847788385863	4.85651695269183	4.9327203069305	4.74861918712238	5.03190584316712	4.64836637206201	-0.0933488682368155	0.816542190507016	0.956731571947764
Merged-chr13-92526131-3	chr13	92525632	92526632	+	949.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173392, intron 1 of 17)	intron (NM_173392, intron 1 of 17)	4678.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	5.16922895118113	5.45182046340623	5.13717173428433	5.49027542528865	5.61630277372411	5.46225896230961	0.504902399710475	0.146843972674681	0.511240993378934
Merged-chr15-79413945-4	chr15	79413458	79414458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10655.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	7.44981731852036	7.30521626038897	6.92597280451635	7.08627265141833	7.46673503205392	7.09704681646532	-0.0255876455583125	0.926353772406005	0.983439800637409
Merged-chr9-107742492-2	chr9	107741992	107742992	+	745.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_148930, exon 24 of 25)	exon (NM_148930, exon 24 of 25)	28510.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	2.95380389131012	3.05214809792364	3.22990051955459	2.96978933537055	2.82514587456964	3.13610438925315	-0.471218379775838	0.49413834452008	0.831815174927983
Merged-chr10-80697447-2	chr10	80696947	80697947	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	4373.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	4.7874182410685	4.42096310323479	4.97374523749745	4.57500968754639	4.82599554528808	5.1922321002827	0.320567511736072	0.477804109414865	0.823367525497911
Merged-chr16-57518840-2	chr16	57518340	57519340	+	880.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-30402.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.15529454249709	3.23977695450095	3.21075100274482	3.19846489020873	3.01594634358793	3.44462998370192	0.0857237629341474	0.895212715461374	0.975665889379756
Merged-chr11-94348143-4	chr11	94347667	94348667	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	20166.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	4.81047146396813	4.47101578005645	4.81823966619037	4.61203135950752	4.55978253282024	4.65653588416247	-0.232183607209315	0.581264962623039	0.873263270263929
Merged-chr14-54766427-1	chr14	54765927	54766927	+	606.0	f0_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	15459.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.41088946077025	4.27991448691177	4.57101060840997	3.65181645127682	3.49029629084746	3.85280132032315	-2.41189897399772	1.07458586851221e-05	0.000425984473307119
Merged-chr2-124658558-2	chr2	124658058	124659058	+	689.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 12 of 17)	exon (NM_172537, exon 12 of 17)	4977.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.17022726394238	3.52642207119285	3.81977597080831	3.35076421887166	3.3258065914177	3.65278645352179	-0.28995297380277	0.654199149009602	0.903708984834566
Merged-chr7-116444422-4	chr7	116443953	116444953	+	834.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-995.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.29406680164905	6.45992242179655	6.6234370347908	6.1297607188938	6.41544429863699	6.46581841794473	-0.188131440681207	0.512326610284407	0.841860053306022
Merged-chr1-131073170-2	chr1	131072670	131073670	+	842.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	Tigger6b|DNA|TcMar-Tigger	24673.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.29478380686953	6.54901045229611	6.24869678678286	5.23648341253648	4.58803541866446	5.44308204942025	-2.32862615721318	2.97896289978993e-09	3.02284810933805e-07
Merged-chr1-171270316-4	chr1	171269813	171270813	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020579)	promoter-TSS (NM_020579)	-15.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	7.03992948191591	7.12893660852377	6.56937688442584	6.62124149893795	6.72039878656261	6.71468596322746	-0.405646796850653	0.145320779905774	0.508338649447163
Merged-chr11-95825093-4	chr11	95824594	95825594	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	594.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	5.7628955855382	5.64099521080419	5.66575308921798	5.60294973046357	5.6278031138351	6.15737911052474	0.211808302879916	0.535099072082996	0.853401636668045
Merged-chr2-156725536-3	chr2	156725033	156726033	+	942.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	4254.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	4.98457683500136	5.13039443793228	4.99659202786325	4.9425738357946	4.8847369924439	5.12874008317235	-0.133340227063646	0.721541120943196	0.928503945058713
Merged-chr13-58448242-4	chr13	58447699	58448699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44856.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.57047439958489	5.51041214788763	5.40141805295114	5.66141071494792	5.78623481551449	5.46539840961416	0.288808042994791	0.380622405771702	0.762649007906869
Merged-chr9-55254081-4	chr9	55253572	55254572	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	29553.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	6.37566300592956	6.71470250741173	6.33210365853725	6.3979399447799	6.24530239209401	6.06665562465124	-0.400053454617502	0.175140463569543	0.554867054796835
Merged-chr9-13587280-4	chr9	13586784	13587784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32705.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	7.03411724968218	7.07285133089637	7.03183278028059	7.11322250469499	7.47230065796235	6.82743929684883	0.199705966299693	0.468502029623314	0.818673566064062
Merged-chr9-108347803-4	chr9	108347313	108348313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-18.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	7.41391702456726	7.18202057105692	7.29174788099509	7.53045238314486	7.46068413172477	7.38255454112844	0.238877833770686	0.303508794625032	0.700051553240739
Merged-chr16-19967197-4	chr16	19966703	19967703	+	770.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	15846.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.75894681365711	3.94215679252957	4.22434635112665	3.8652972026234	3.74673335700546	3.67249055033195	-0.672745493735124	0.214855354143024	0.608043136777522
Merged-chr9-107950942-4	chr9	107950437	107951437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011634)	promoter-TSS (NM_011634)	-26.0	NM_011634	22036.0	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	5.2087981580556	5.02192711456813	4.7795489411311	4.85532023442021	4.67195745574933	4.84624611697731	-0.524795391054032	0.187763827048645	0.573001266084635
Merged-chr16-91742498-2	chr16	91741998	91742998	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13127.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.65271974544403	4.48997849480837	4.66209644886975	4.44133442033701	4.32826958165621	4.20689841838546	-0.676825632402291	0.123632077760193	0.470614601282993
Merged-chr2-39003023-2	chr2	39002523	39003523	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	2108.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	2.99866859372182	3.39756533810409	3.33134187960382	3.45482293127438	2.94537391036603	3.61127017738321	0.433743981862287	0.543006310584823	0.857468369859798
Merged-chr4-134929812-4	chr4	134929303	134930303	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1177.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	5.85600113475475	5.95675904283942	6.29374030014349	5.86216543142319	6.24246990567651	6.58835580231621	0.368772721859681	0.278748546834154	0.676134243382005
Merged-chr15-88490462-4	chr15	88489956	88490956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109846.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	7.61660874399702	7.55163060620704	7.68834270108952	7.86642993844935	7.94555549799959	7.69084083873378	0.327552459356377	0.140789891663568	0.501341434738828
Merged-chr17-24739939-1	chr17	24739439	24740439	+	677.0	f1_c57bl6.idr	intron (NM_013759, intron 2 of 4)	intron (NM_013759, intron 2 of 4)	3346.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	2.91934501460933	3.01513700800181	3.29515731247939	3.2124427175523	3.18744109632306	3.41832660906271	0.82750118617503	0.213224295301023	0.606044992772247
Merged-chr4-86943491-3	chr4	86942998	86943998	+	992.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	69084.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.19726011564688	3.03712826826055	2.93761348579537	2.59953266120053	2.65424145521622	2.82530363357798	-2.00924759244714	0.00934497111195283	0.095999837089776
Merged-chr11-101468087-4	chr11	101467590	101468590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-85.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	6.67349141117947	6.58855373712931	6.20171362873404	6.07895839211189	6.08674616665608	5.79497899193678	-0.848969132739904	0.00553407860832841	0.065828094010405
Merged-chr7-30418985-3	chr7	30418507	30419507	+	855.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011827, intron 1 of 3)	RMER4B|LTR|ERVK	847.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	7.19367241292833	7.30480964575711	7.50265635507929	7.49597921707625	7.84637236736713	7.4895743668723	0.432138506843967	0.0835802834375877	0.382643643701502
Merged-chr5-17839751-4	chr5	17839240	17840240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-3844.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.49081098059167	6.78727543522202	5.78998928148705	6.37845339571813	6.55422275790226	6.18852276758439	-0.0750858200149941	0.834627122205044	0.961356762574624
Merged-chr16-11011303-2	chr16	11010803	11011803	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	intron (NR_040518, intron 1 of 2)	2405.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	2.58153246372029	2.54174374396013	2.8679171353109	2.62077337654436	2.57669648686664	2.37385213862263	-0.773911117104684	0.349696430763266	1
Merged-chr17-42887631-4	chr17	42887125	42888125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11201.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.42341438811767	5.47378879047327	5.88634080875742	5.84145455614008	6.22847460935767	5.85192032993236	0.7171642599502	0.0355104724926597	0.231322597131959
Merged-chr15-75062317-4	chr15	75061801	75062801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13464.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	2.58535706178819	2.47712705237749	2.5612484173272	2.7856174034142	2.90765377275322	3.11810402916951	2.24783190458045	0.00506024284760106	0.0616927013718959
Merged-chr15-77533548-2	chr15	77533048	77534048	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175391)	promoter-TSS (NM_175391)	-233.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	1.86966281324506	1.93802383710431	1.90791696981881	2.19759548352525	2.0138090731869	2.576601004896	3.07388497217188	0.00579850107908915	1
Merged-chr4-41464645-2	chr4	41464145	41465145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	203.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	6.31237043642667	6.58023416441035	6.55031409074632	6.39261332392573	6.83537289809114	6.2883281554242	0.0934324594021937	0.757364275759484	0.939861209437025
Merged-chr13-85288008-3	chr13	85287521	85288521	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	intron (NM_145452, intron 1 of 24)	1465.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	6.19870129952077	6.45602386022361	6.58213782607538	6.45410384511359	6.6701077432423	6.82334275872213	0.383427429572906	0.177874783501961	0.55892688546374
Merged-chr19-29939960-2	chr19	29939460	29940460	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5830.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	2.94108564517341	2.86246176773575	3.01457034730229	3.01060636130289	2.78014989941679	3.19878600049391	0.291576642239865	0.678580733022317	0.913498554171186
Merged-chr11-117166638-3	chr11	117166143	117167143	+	864.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33018.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.8505363508671	3.56961433191984	3.27328033966858	3.28646585113107	3.20744238899664	3.46534225813062	-1.03157707659771	0.106957601813408	0.436475141328597
Merged-chr3-137968999-2	chr3	137968446	137969446	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12603.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	4.50114429507517	4.43970808693209	4.10678639925733	4.1306673112083	4.46553007908319	3.96393550393055	-0.396207917784033	0.438179444086201	0.800419903410376
Merged-chr5-64815216-2	chr5	64814716	64815716	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	11693.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	2.84624259628236	2.96100219598361	3.19538964848668	2.97752095611706	2.69218473154877	3.21259719116818	-0.144421110129855	0.845047828411736	0.963760118842549
Merged-chr13-94173885-3	chr13	94173386	94174386	+	987.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	111395.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	3.30529815086141	3.45089161785673	3.32742221146267	3.02402097213359	2.96607590878738	3.23020201083652	-1.27901079937309	0.0506350994866839	0.286654331071438
Merged-chr2-118511967-2	chr2	118511398	118512398	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32202.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	3.01655072518128	2.87578165899603	3.0349376063755	3.24300234388295	3.06231931981264	3.16647457932802	0.823816909151048	0.214850793647082	0.608043136777522
Merged-chr11-9337332-4	chr11	9336778	9337778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	145336.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.96772574727084	5.73316647850633	5.56351574375008	6.1604747752945	6.3776667966371	5.53290720826798	0.545852115219068	0.138396275714024	0.497158283020873
Merged-chr3-69607070-4	chr3	69606586	69607586	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8126.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	6.37317411836429	6.38358331142147	6.17707373879364	5.98499919341175	6.15244022761538	6.2983910749494	-0.29277560679711	0.307179229535706	0.703275671477878
Merged-chr14-31401107-4	chr14	31400604	31401604	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16573.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.75099379065948	6.61702601644211	6.78417241807426	6.54000572098221	6.30058862536993	6.48559439345529	-0.441296935759695	0.0964336171835855	0.413973503513996
Merged-chr1-85585054-1	chr1	85584554	85585554	+	565.0	f1_balb.idr	intron (NM_030194, intron 7 of 11)	intron (NM_030194, intron 7 of 11)	13756.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	2.42223825467283	2.69829931395045	2.49874170532827	2.16635053327413	2.03958291202903	2.31186864392135	-3.13895854258761	0.00390921758199529	1
Merged-chr1-181234506-4	chr1	181233988	181234988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22510.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.64384709071956	7.15997161041175	7.17375404068494	7.019277316956	7.00753949617737	6.86323076245359	-0.0669298357637589	0.809359850825121	0.954721853010197
Merged-chr10-62338663-3	chr10	62338114	62339114	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	1807.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	3.8068178567099	4.17793275769431	3.87854741930843	4.40688807568794	4.16340890078538	4.65194753324703	1.22053318361441	0.0188435879511925	0.155343709884524
Merged-chr4-150606007-4	chr4	150605519	150606519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46155.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.84071114683706	5.55474484038021	5.66865969227618	5.62865545109536	5.71215067675071	5.44191161800015	-0.15921530543074	0.627934987589573	0.893454419414385
Merged-chr10-125966180-4	chr10	125965668	125966668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177152)	promoter-TSS (NM_177152)	-51.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.28530349712091	3.84386307161142	4.0513399194981	3.89783749615017	3.54311116523708	3.87622010988107	-0.924819913515777	0.092865072242102	0.406070572868822
Merged-chr13-33004635-4	chr13	33004125	33005125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	84.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	6.66866276267579	7.02062999652245	6.69493720088014	7.16671712869455	7.47929495781873	6.89718166851012	0.613103659161205	0.0321329773188445	0.217658806312798
Merged-chr5-148464629-4	chr5	148464167	148465167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64763.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	6.76940672170068	7.08281344837582	6.88599063585142	6.71106345344704	6.73107786989844	6.88736516430412	-0.229582940425272	0.374142769768686	0.757904167565313
Merged-chr18-53248834-2	chr18	53248359	53249359	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	3197.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.60211526167502	6.62179505231711	6.55251212279281	6.89289365852245	7.08228089224162	6.52062728631584	0.426024175456199	0.126790651604837	0.475821329578006
Merged-chr14-106194319-3	chr14	106193827	106194827	+	895.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	88129.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	2.8019198932753	2.75623214454615	2.97728557077614	2.68631686695089	2.75471542784662	2.75244089166771	-0.580247152389087	0.42425411649478	0.792602112765787
Merged-chr1-95646231-3	chr1	95645711	95646711	+	962.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	21383.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.73380448526156	5.75454263836729	4.79713617282256	5.11294224574518	5.14209951263888	5.22081819077602	-0.691758295053622	0.108617003116702	0.440310026080802
Merged-chr7-99382167-2	chr7	99381667	99382667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362166, exon 1 of 19)	5' UTR (NM_001362166, exon 1 of 19)	649.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	6.29270957564195	6.30538991884367	6.17656537102001	6.21899241841873	6.0726440273403	6.01262837068522	-0.264834764918182	0.347894036687262	0.735872359218958
Merged-chr15-82127836-4	chr15	82127343	82128343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172428)	promoter-TSS (NM_172428)	-79.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	7.61381256649248	7.82616193620731	7.42199659211843	7.71712434933504	7.87645235803483	7.69796641296513	0.188672803897303	0.427522453740771	0.794365779350231
Merged-chr11-69757149-2	chr11	69756649	69757649	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B2_Mm1a|SINE|B2	1484.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	5.12455441018653	4.87940825075981	5.13532396155642	5.1458570435315	5.2894631646647	5.23179871892099	0.373269144551827	0.3049066765321	0.701230797737315
Merged-chr8-120673224-2	chr8	120672724	120673724	+	811.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001293559, exon 4 of 5)	exon (NM_001293559, exon 4 of 5)	4904.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	1.97781259944588	1.91050804602313	2.10626928067097	1.7830360075992	1.7786224795116	1.91678303382764	-1.55439667649292	0.125508320597307	1
Merged-chr1-54883202-1	chr1	54882702	54883702	+	640.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	43185.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.6252309229871	3.6512573246792	3.76684212135634	3.48021560545497	3.33347749493858	3.68750697346968	-0.646057383334943	0.261887833077881	0.659718531523246
Merged-chr12-4189843-4	chr12	4189334	4190334	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44131.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.67038183202997	5.63506120094161	5.76101898191162	5.00634870659497	4.91685290176751	5.33888310289268	-1.19349355140545	0.000727843099676227	0.014080997125752
Merged-chr8-22653389-4	chr8	22652910	22653910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011130)	promoter-TSS (NM_011130)	27.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	7.45272512756429	7.37283732408308	7.27846337179552	7.23700250102184	7.52536870964435	6.97057183070295	-0.140876074024447	0.590786525751714	0.877301111216348
Merged-chr4-83273099-2	chr4	83272599	83273599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	RMER17B|LTR|ERVK	51090.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.48907438224666	6.63392781621297	6.89021801691954	5.88783711822629	5.81029127751288	5.98046480233626	-1.31150926984835	6.92678435984362e-06	0.000292867821653388
Merged-chr13-37666982-2	chr13	37666482	37667482	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159056.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.78503368431412	3.73025065445164	3.68383350751927	3.53429501332948	3.17342774906374	3.75377518138477	-0.825494338743312	0.180197914855388	0.561900868076458
Merged-chr18-33795556-2	chr18	33795013	33796013	+	923.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013512)	TTS (NM_013512)	621.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	6.40409864449149	6.51268954261848	6.19747401525834	6.63371265561985	6.59779756950688	6.49732936026597	0.310474266543994	0.253916425254254	0.651117231535132
Merged-chr8-115618338-8	chr8	115617830	115618830	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	88564.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.39064641275403	6.40313537317628	6.35658855273489	6.54723069217269	6.4592951080588	6.59485058802944	0.235533345740778	0.370218340061801	0.754676791870979
Merged-chr7-99089098-4	chr7	99088607	99089607	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52037.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.84298695337201	5.66952595103508	5.63509731600931	5.80356811252067	5.73617386987785	5.72466716532466	0.0578471383683491	0.852136345001706	0.96531854415899
Merged-chr7-100591100-4	chr7	100590595	100591595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	319.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	7.68229790165195	7.67852319536619	7.4007481606115	7.86496667972979	7.83422170277604	7.31853296542775	0.153092995237693	0.559013982693222	0.864901733108576
Merged-chr4-63594452-2	chr4	63593952	63594952	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6312.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	4.8557259280166	5.00258601316462	5.13493491768268	4.67235033707962	4.66684438900229	4.82315438994384	-0.629118539875723	0.10897684977431	0.44106937375527
Merged-chr9-94689375-2	chr9	94688875	94689875	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	Lx2|LINE|L1	19483.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	3.49216432003647	3.74410319656113	4.40661886085603	3.78278188317578	3.48297777237493	3.89764665527218	-0.633287794857026	0.3160148224483	0.71019071166749
Merged-chr7-100499408-2	chr7	100498908	100499908	+	661.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011671, exon 8 of 8)	3' UTR (NM_011671, exon 8 of 8)	6050.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.30653557999185	5.22045527558172	5.40906424856525	5.18089369490854	4.99624917964018	5.35542677517478	-0.275836017169098	0.443352184810442	0.803773617218585
Merged-chr16-49905497-7	chr16	49905011	49906011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	49857.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.18518160964841	8.23340045685408	8.18244225626882	8.32673240299521	8.48330240924285	7.92940074465444	0.105019776302497	0.658857263519736	0.905104757849598
Merged-chr6-122572536-1	chr6	122572036	122573036	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	18727.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	6.42576474324034	6.47763915631147	6.88724812384876	6.48233284072759	6.6514128976058	7.08306870329259	0.239662342147147	0.43737362264813	0.79993041862787
Merged-chr12-82257080-3	chr12	82256554	82257554	+	930.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-54295.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.84190174748331	5.8920365690488	5.8250858871649	5.74893225967312	5.63373128415643	5.59304339945849	-0.350080201314028	0.253200278268747	0.650602979742283
Merged-chr4-133662543-3	chr4	133662093	133663093	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145956, exon 3 of 3)	exon (NM_001145956, exon 3 of 3)	10054.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.41062783492909	5.85421906457184	6.29198865741706	4.1478541256191	4.14065951360464	4.33691670420935	-4.72872511518513	2.86106076522882e-20	1.96746400126578e-17
Merged-chr8-105305791-5	chr8	105305314	105306314	+	834.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148952)	TTS (NM_148952)	213.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	3.63841603539286	3.3472274082734	3.74101821356709	3.73960363646237	4.06171338187924	3.5962813159628	0.806867682843118	0.172172386311596	0.550749681454482
Merged-chr11-32881790-3	chr11	32881291	32882291	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57197.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	2.20156543495701	2.09767196160069	2.25969038632646	1.81873574972158	1.86962499325683	1.86300961842479	-3.30879824166805	0.00574184343668619	1
Merged-chr4-139130345-4	chr4	139129856	139130856	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	CpG	681.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	7.74567837191523	7.57799927626219	7.20233019310243	7.54729353533822	7.29664045498516	6.77307842010624	-0.412510428978384	0.175642942427144	0.555698392534067
Merged-chr1-88292363-2	chr1	88291863	88292863	+	969.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-14349.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.33951357692064	3.50555208379714	3.66290254802345	3.42384999403427	3.32965168748567	3.82632980019816	0.112237759977852	0.854737815010079	0.965987623019113
Merged-chr8-39642758-4	chr8	39642265	39643265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031195)	promoter-TSS (NM_031195)	-87.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	7.33385070399408	6.96005034629033	7.0901451699143	7.27673796141665	7.12190369014825	6.88246115202399	-0.044805825134628	0.865411936350274	0.968641478520565
Merged-chr8-85557727-4	chr8	85557224	85558224	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2453.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	6.94216636536852	7.22644672734879	6.91676568601959	7.37665879136766	7.7025940475079	6.78525114644914	0.470264396663147	0.132693688996537	0.487490682768503
Merged-chr11-54736976-3	chr11	54736438	54737438	+	773.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	50765.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.46811584551044	3.77376465249141	3.75995368725413	3.52239009595089	3.73717835934648	3.62303384714304	-0.131001508299746	0.817530076850425	0.956767881392089
Merged-chr17-44782588-2	chr17	44782088	44783088	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	5422.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	4.84546988697632	5.2493299420529	5.13063764733477	4.81133646534729	4.74166755670772	5.2855933391725	-0.278338991960349	0.502632214691173	0.836562439638842
Merged-chr3-69065455-2	chr3	69064955	69065955	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20713.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	2.5514791790957	2.3788155632342	2.6000467593086	2.52202103690873	2.24229928795064	2.54945202740985	-0.425147290326204	0.612034154412747	1
Merged-chr5-24100541-4	chr5	24100051	24101051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026448)	promoter-TSS (NM_026448)	-39.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	6.70933768967699	6.64203420042639	6.11908495018895	6.52432950724825	6.1467465048653	6.24745163801847	-0.345559989631678	0.270579593297286	0.667627043830044
Merged-chr12-71012255-4	chr12	71011758	71012758	+	692.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045056, intron 2 of 2)	B4A|SINE|B4	3565.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	3.66616740126898	3.76997563223991	3.64151891582989	3.72398341084082	3.88635218575229	3.91702803347582	0.480272782054977	0.365877569113823	0.750997601529996
Merged-chr6-29767920-2	chr6	29767427	29768427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-516.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	7.46549434026148	7.73198817263744	7.16514522184028	7.15127035054662	7.50029487063755	6.91325899321443	-0.383460067948602	0.186863947316553	0.571649303125656
Merged-chr7-16819946-2	chr7	16819446	16820446	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3214.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	2.76479792911556	2.75674749285057	3.11649220884455	2.6984342933362	2.64075550386802	3.29076743238231	0.0985814906867686	0.901313030550341	0.977176770690314
Merged-chr4-149173859-4	chr4	149173341	149174341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	6.29374313762574	6.05457025715344	6.29465503638272	6.01372611171192	6.20244759920791	6.48017362595213	0.0385844635024335	0.897987019209169	0.976213110836171
Merged-chr10-61452916-4	chr10	61452414	61453414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-245.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	6.81219822659342	6.50633948399709	6.64717831306034	6.85454527223233	6.54416012737885	6.55246274012235	-0.00386347500886497	0.988796896405615	0.997426973334006
Merged-chr6-54960102-4	chr6	54959536	54960536	+	799.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	11625.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.72123862376529	4.84466066892912	4.9538307401628	4.84489479252229	4.79048328818551	5.11685878458358	0.171402838358101	0.664231649709761	0.90757310763982
Merged-chr16-57383742-4	chr16	57383208	57384208	+	779.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	30431.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.07594063605578	2.99775494016905	3.15814319513723	3.26651714994764	3.14326245223373	3.23002263742538	0.596859912407143	0.351207189300267	0.739086949987195
Merged-chr2-38286709-4	chr2	38286148	38287148	+	874.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	736.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	8.16662187910646	8.55550677879494	8.14888952782853	8.02252355996521	8.11909673848186	7.66130861314654	-0.496100431945989	0.0502248093726343	0.285205384202362
Merged-chr5-106681128-4	chr5	106680627	106681627	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	15703.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	3.41137362980195	3.26980465164491	3.72850283309845	3.27071642848474	3.40760625800765	3.08832805168217	-0.806512232463084	0.22309282610509	0.617935983824703
Merged-chr7-25690488-1	chr7	25689988	25690988	+	541.0	f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	(TGAA)n|Simple_repeat|Simple_repeat	3486.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	4.78789899454652	4.67392665433574	4.81894947239247	4.92870427713643	5.01896701445355	5.15945205766996	0.612528960213068	0.110081815950641	0.443363350300229
Merged-chr2-79193998-3	chr2	79193497	79194497	+	846.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61429.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	2.62467086408866	2.64544735569914	2.62285910706253	2.6651121059906	2.50852459956924	2.81862474130148	0.180552117479296	0.812739909739486	1
Merged-chr16-14367037-4	chr16	14366475	14367475	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	L2|LINE|L2	5417.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.20712884443873	4.02159859906471	4.173488620945	4.04951632152436	3.9476947744626	4.15036359448755	-0.259607140529963	0.591205445215546	0.877444040480435
Merged-chr12-8902813-4	chr12	8902322	8903322	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-18485.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	5.61449833877402	5.75249820571725	6.12757561569192	6.42615181183212	6.20592885349702	6.28773329457523	0.812056372795348	0.00934639313845154	0.095999837089776
Merged-chr1-195241706-4	chr1	195241179	195242179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-64964.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	7.69671857763513	8.03701590919611	7.65605518128241	7.68960966254953	7.66449826227697	7.18352493419357	-0.391394499739477	0.141223031914687	0.502002992120524
Merged-chr7-126704274-4	chr7	126703777	126704777	+	847.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301374)	promoter-TSS (NM_001301374)	-57.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	5.22191455337679	5.42914132953248	5.81205951542528	5.56297275494589	5.63565779094096	5.57015678075926	0.179307278683926	0.611350498527376	0.886052016077495
Merged-chr11-72216657-4	chr11	72216163	72217163	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1071.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	6.02666319926734	6.08790306651777	5.75215047334337	5.89829928122251	5.7090748254255	5.39170321434847	-0.49714248336547	0.13705398102414	0.494599802795534
Merged-chr8-41003208-4	chr8	41002698	41003698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	L1MB2|LINE|L1	-14270.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.80125771900162	5.81072209219032	5.66811795030937	7.09799038779148	7.2219594954533	6.3612163628836	1.94519318553043	5.0475204683266e-09	4.91221149857918e-07
Merged-chr9-66344819-3	chr9	66344320	66345320	+	884.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5630.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.49488868700947	4.6353107242556	4.51209931885385	4.38546320956768	4.38104605887301	4.40734624473934	-0.407788361056623	0.340589449595201	0.730255795761634
Merged-chr13-85189393-4	chr13	85188882	85189882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347588)	promoter-TSS (NM_001347588)	-3.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	7.10657177252947	7.37742916876123	7.29572949166924	6.98838890457244	6.92173807285175	6.94120376550845	-0.475207441211662	0.0501827946081797	0.285159854855906
Merged-chr6-47835678-4	chr6	47835156	47836156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027477)	promoter-TSS (NM_027477)	-5.0	NM_027477	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	6.19551440833554	6.6055969764487	6.53603679496305	6.18869917159805	6.11030950099558	6.16010001416503	-0.504730066195744	0.0823230596899	0.379332363801987
Merged-chr13-94381619-4	chr13	94381117	94382117	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	22657.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	5.7333198747333	6.08421305259513	6.18640924863531	5.86746805453767	6.41686100947654	6.10010959842	0.251712757168191	0.449363816514096	0.807761520627757
Merged-chr8-108743379-4	chr8	108742867	108743867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28723.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.17441071543131	3.72893355763937	3.85542733657366	3.69017374026795	3.42678941770741	3.77261557183892	-1.00740226616899	0.0782054957620318	0.369272664360864
Merged-chr4-126468711-4	chr4	126468196	126469196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317173)	promoter-TSS (NM_001317173)	-113.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	5.43063963310018	5.23854803726177	5.57246074750081	5.5212828195322	5.51098047341477	5.43620410241964	0.156811178116569	0.642076118334618	0.899319434652262
Merged-chr2-129514491-4	chr2	129513962	129514962	+	984.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22140.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	7.19032736705872	7.28495091494444	6.90296073466842	7.07753679208337	7.08194287554745	6.93169140842616	-0.165418382596656	0.512720737189467	0.842083317214953
Merged-chr8-86746145-4	chr8	86745653	86746653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009172)	promoter-TSS (NM_009172)	-147.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	6.504939723764	5.95183648254764	6.31834058594479	6.59438405461874	5.48692354734823	6.02050057721166	-0.266859894485075	0.505237566306979	0.838055364884185
Merged-chr14-61971651-4	chr14	61971166	61972166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289293.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.42964336529569	7.56085630867151	7.23272458048835	7.35662648306555	7.52722747823442	7.13856370172103	-0.0904220886374007	0.719326032696572	0.927777045380255
Merged-chr9-61946055-4	chr9	61945566	61946566	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024245, intron 1 of 22)	intron (NM_024245, intron 1 of 22)	733.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	5.26828004289811	5.60947834924896	5.11064406693657	5.33374144201719	5.30699394949287	5.40652441647541	-0.0260935917356823	0.942693698134269	0.987202156853573
Merged-chr3-59208931-5	chr3	59208435	59209435	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	1947.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.8441635459083	6.68644298199347	6.78349132057813	6.87593606417711	7.20108990576185	6.9016121639386	0.366771427645943	0.156767375352485	0.527613063058663
Merged-chr8-11347997-3	chr8	11347537	11348537	+	807.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-35211.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	2.61927763663717	2.47623866865579	2.7075174160717	2.57777933214147	2.36966414857536	2.83925908913086	0.0163278584263619	0.983989650451706	1
Merged-chr7-92653517-4	chr7	92653015	92654015	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 8 of 15)	B1_Mus1|SINE|Alu	-16373.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	5.15596788185122	5.16879477500796	4.79842780978227	5.12580211939774	5.2522556004122	5.32605108289739	0.349837047673887	0.351024417342872	0.738927106247438
Merged-chr19-11957550-3	chr19	11957038	11958038	+	905.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8306.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.1551733773757	3.28231290508422	3.4671456279495	4.28149876384474	4.6252891413092	4.0012745139327	3.87748307186642	1.88097777016549e-08	1.60033127096043e-06
Merged-chr7-130646241-4	chr7	130645797	130646797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	CpG	-46259.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	8.27057210170125	8.44673404934009	7.68414355758114	7.77278568996669	7.77461265973572	7.50736848722275	-0.692394614337273	0.0120196952606444	0.114392634478749
Merged-chr10-14186798-4	chr10	14186315	14187315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220436.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.2846015086599	6.09652596304157	5.95012818166958	6.49934614836863	6.1600509316839	6.08373711065789	0.232633704092691	0.446707174360364	0.80610963227077
Merged-chr11-5878330-4	chr11	5877829	5878829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361942)	promoter-TSS (NM_001361942)	-73.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	5.26878255411474	5.16006526962779	5.56477111659969	5.51398012685964	5.43009208864574	5.67814342530318	0.402895469046714	0.248591594404584	0.64569263919114
Merged-chr3-98069486-4	chr3	98068969	98069969	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	55931.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.16886099808099	4.00701359024117	3.84483984736756	3.86352878331789	3.87291099099014	4.06420123035385	-0.270353498910505	0.596174155393941	0.8798867145239
Merged-chr5-90697141-2	chr5	90696641	90697641	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-56614.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.01630793855579	5.08473190465345	5.34869525811478	4.40808829569579	4.02080540074308	4.57864059784971	-1.94108805606313	1.9015397091778e-05	0.000698866237284746
Merged-chr15-58870143-4	chr15	58869682	58870682	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2467.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	4.39215512642156	4.41335263435611	4.06633112024923	4.28779876091206	4.58443556742915	4.42403277956541	0.342595155529372	0.464151189834628	0.816188315062566
Merged-chr19-55689764-4	chr19	55689261	55690261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	12443.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.85001948422365	4.65183657893675	4.75195016666087	4.81820617340054	4.86922637826004	4.77900121787231	0.165278251174757	0.674198203537321	0.911841916826811
Merged-chr7-46917939-4	chr7	46917474	46918474	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021884, intron 1 of 9)	L2a|LINE|L2	1995.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	5.18485519774174	5.21100153360559	5.41994303208044	5.59716888798878	5.20182258504652	5.94747714176741	0.64622215854034	0.0921177983989897	0.404290193005071
Merged-chr8-103588928-4	chr8	103588421	103589421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14878.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	4.16614372526281	4.18524781855299	4.0824624893629	4.12838535255807	4.11842230874055	4.28860023314395	0.0725364267506029	0.877049973404215	0.971489168500291
Merged-chr3-62492771-4	chr3	62492269	62493269	+	880.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028136, intron 8 of 24)	intron (NM_028136, intron 8 of 24)	14219.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	3.62749162527139	3.94211031444186	3.63720000103703	3.97644095404572	3.88172245587753	3.96983405149919	0.596622220625249	0.266595820555968	0.664166899200562
Merged-chr10-112928945-4	chr10	112928436	112929436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033474)	promoter-TSS (NM_001033474)	90.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	8.07926279006085	8.48437586771342	7.7674625006567	7.92492228677996	7.78601219181513	7.95631555642279	-0.373964554007476	0.155921254203423	0.526009040006524
Merged-chr7-64011297-2	chr7	64010797	64011797	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-72382.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.76070487223458	5.04775128546323	4.81972874885483	4.6186129770778	4.430244672914	4.60937620517245	-0.792413899255946	0.0548090329230677	0.300768318371207
Merged-chr2-84555628-3	chr2	84555132	84556132	+	919.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-48759.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	2.06466092915478	2.00205203004149	2.01555631681128	2.46271878186077	2.20080141087985	2.43410236738704	2.69430816837942	0.00763155566957179	1
Merged-chr9-107747097-2	chr9	107746597	107747597	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	B1_Mur2|SINE|Alu	23905.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	5.30250962557493	5.02253532800871	5.36159043346642	5.06888204025365	4.87957219823195	5.60943043386814	-0.0445471085346367	0.913746262926967	0.980796798598326
Merged-chr7-83631926-4	chr7	83631425	83632425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-92.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	6.79140580271256	7.21069097413412	7.26948200943866	7.052499281577	7.33428709500883	7.07427758682601	0.0938194573682079	0.729104679460938	0.930580253159337
Merged-chr11-102429305-6	chr11	102428820	102429820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-1002.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	8.5700057948585	8.39252738883445	8.05433350299617	8.42025115151974	8.77884898458552	8.01720835119351	0.125448011120688	0.654706096203796	0.903878958900373
Merged-chr2-59245317-3	chr2	59244949	59245949	+	912.214294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	RSINE1|SINE|B4	84599.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.26394152015859	4.21753594828976	4.09822272561017	4.29420784539038	4.06153693150965	4.1672928034369	-0.0704418532127187	0.88117636070197	0.97262624933271
Merged-chr15-84253631-2	chr15	84253131	84254131	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	21588.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.02729679335924	4.70806046097267	5.17109403486456	5.37912825169321	5.43108255155136	5.47510766711133	0.934632498789141	0.0116766404142616	0.112153976173367
Merged-chr13-5615068-4	chr13	5614574	5615574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243018.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.13667548838619	7.11842805474232	6.84189583299916	6.49691826809926	6.57377436135387	6.64777769618416	-0.739911453500239	0.00399318520474576	0.0518384551100578
Merged-chr7-142363277-3	chr7	142362771	142363771	+	896.3666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	8988.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	2.07203354751745	2.0116367802921	2.21513269264889	2.42762758341718	2.38082601148678	2.42308562066939	2.45412840208674	0.0108917994203437	1
Merged-chr13-51842189-2	chr13	51841689	51842689	+	938.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4486.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.62545480357863	3.37355474353338	3.35991266650069	3.10944290046804	3.17979939970606	3.31814302926248	-1.05268619605633	0.0944219230988572	0.40956364370587
Merged-chr1-13426456-4	chr1	13426013	13427013	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52430.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.63157376848254	5.64261827700041	5.66256967384013	6.01454540611903	6.01752473065635	6.128516083539	0.723224730022259	0.0153512547691359	0.134869307024629
Merged-chr11-86751203-2	chr11	86750703	86751703	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B3|SINE|B2	6364.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	6.74201441640592	6.63502853897606	6.61327981574868	6.75212682291161	7.04578750759166	7.13971706019877	0.496827557378687	0.0580954021938811	0.311409020533947
Merged-chr14-59556326-4	chr14	59555833	59556833	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41626.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	3.71601293848078	3.81415442814926	3.92075898683035	3.81899119469828	3.74528109253813	3.79232136643988	-0.0986824566347803	0.850082833339669	0.964801567373977
Merged-chr5-99251009-4	chr5	99250499	99251499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1928.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.70560140758894	9.10094938250884	8.64852051928763	8.69051638758918	9.05719408657587	8.57427451662226	-0.0578389114648029	0.817134290078476	0.956754861188725
Merged-chr5-124052302-4	chr5	124051795	124052795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20035.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.84596901984312	7.79296640699359	7.42186966614035	7.23888192363557	7.33314476842189	6.64690693450089	-0.859610349549748	0.00343882118452205	0.0466297779417147
Merged-chr17-31565471-3	chr17	31564973	31565973	+	940.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016670, intron 1 of 10)	CpG	700.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	6.93098612020654	6.64035755546442	6.34723454179273	6.92856068105276	6.21525382688563	6.71281900815934	-0.03089551542108	0.925419002581788	0.983183533267328
Merged-chr17-27912580-1	chr17	27912080	27913080	+	686.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	3274.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.47904932779816	5.78984786397108	5.67857804499891	5.53592948439502	5.28537186788921	5.58013781107669	-0.362735931810831	0.28389026906026	0.681514542091937
Merged-chr11-103362948-14	chr11	103362439	103363439	+	936.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 1 of 17)	intron (NM_001205236, intron 1 of 17)	753.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.33290354966228	7.57214360482099	7.29281189029899	7.25403592669418	7.67468435850524	7.15389119153827	-0.0240735508742447	0.928263895215201	0.983802612059568
Merged-chr2-27736632-2	chr2	27736132	27737132	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	26049.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.46785578257084	5.46624696774576	5.96284240365407	5.62079144704087	5.33509340149519	5.89324015980995	-0.0323820493704478	0.930287718601296	0.984485771257693
Merged-chr5-142795344-2	chr5	142794844	142795844	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	ZP3AR|Satellite|Satellite	22043.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	6.25905647391073	6.35327981997758	6.66631016792095	6.71769948085279	6.57975057778558	7.14589349391787	0.633118532701755	0.0363003979478511	0.234436783021173
Merged-chr15-77842289-4	chr15	77841789	77842789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022410)	promoter-TSS (NM_022410)	-114.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.32335581082115	6.80162504833624	6.80503877387659	6.16236116578646	6.60679858190816	6.87716567570992	-0.130776138629304	0.687615005591667	0.917193226920892
Merged-chr8-84276956-3	chr8	84276486	84277486	+	811.4317629999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-6584.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	4.75727320121296	4.49557877924619	5.0955967016681	4.88759548970787	4.49267362838764	4.7095392399995	-0.212494303864437	0.633153536653435	0.895945572329466
Merged-chr19-32712270-4	chr19	32711734	32712734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	64.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	8.34754243894225	8.50470837317117	8.01190912811801	8.29407159062977	8.36704807560124	8.02949647449448	-0.0946410620577672	0.696502816941383	0.919491129354085
Merged-chr9-66834839-4	chr9	66834337	66835337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026674)	promoter-TSS (NM_026674)	-131.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	6.66285219746887	6.992024796633	6.76128183854898	6.51360207429226	7.0076127193468	6.53562352068439	-0.150691383050407	0.608235137885033	0.884939098980775
Merged-chr9-85343222-5	chr9	85342758	85343758	+	898.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16108.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.96625303529062	5.07126794574278	5.39340529915585	5.16562957883494	5.23883945598168	5.45558223862436	0.289399412456441	0.436521551589141	0.799492139444127
Merged-chr13-112427627-4	chr13	112427128	112428128	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-36442.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	2.89294711310151	2.98322388098402	2.70740135545986	3.07670560853025	2.79301230127606	2.97436505382823	0.383272631178589	0.599067120271331	0.880902871165758
Merged-chr7-44820097-1	chr7	44819597	44820597	+	544.0	f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-3439.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	2.52761524371048	2.29713987613785	2.50972656457028	2.3406941938893	2.22831739124295	2.32613169922943	-0.993274127407628	0.242358684094647	1
Merged-chr5-38480252-4	chr5	38479730	38480730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102414)	promoter-TSS (NM_001102414)	76.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	5.14567628632155	5.11215536506988	4.94310696598065	5.39698392005513	5.54267682961118	5.2895982619246	0.700700800332697	0.0490035587779898	0.281274165772379
Merged-chr7-25706500-4	chr7	25706016	25707016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12537.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.85646060209903	7.82578083031087	7.85392900725433	7.53887771233686	7.9839387242515	7.76087689869771	-0.0936304913885219	0.691363803179008	0.918275389711443
Merged-chr18-39737888-4	chr18	39737385	39738385	+	966.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35612.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.54868830671627	4.52914758477269	4.48854140403905	4.63838324682158	4.3830903473707	4.79006869323707	0.192268620563356	0.656380396039465	0.904644460166826
Merged-chr11-95259810-2	chr11	95259310	95260310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1719.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	3.46245086720518	3.44943934401043	3.78547227424568	3.48480386725003	3.1429831577626	3.27767311364895	-0.994547681165087	0.113535480821489	0.450181571989254
Merged-chr9-70843242-2	chr9	70842742	70843742	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	91566.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.10384180367495	5.85821542002553	6.11670038254185	5.81988514093724	5.62968960202892	6.19672352083519	-0.242468708899989	0.461502226617468	0.814992635038861
Merged-chr14-31189983-2	chr14	31189483	31190483	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 6 of 13)	B1_Mus1|SINE|Alu	16843.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	6.16457995004481	6.22973823310294	6.41108999086034	6.0673721590905	6.19672029951631	6.38072609335774	-0.0847673374263594	0.76815774826018	0.942831449939876
Merged-chr16-33380817-4	chr16	33380364	33381364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	89.0	NM_011749	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	7.17765476156614	7.46711953510712	7.48222665604546	7.57025644466931	7.107070297014	7.14754467980147	-0.128655275101578	0.629213526600206	0.894111604640856
Merged-chr6-142707996-2	chr6	142707496	142708496	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5722.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	2.33666236804533	2.30659123793928	2.29439008489633	2.5227729136135	2.51471422091262	2.56613881050811	1.4194364567851	0.0859928800873309	1
Merged-chr2-59177463-4	chr2	59176924	59177924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	16574.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.92456064913721	6.64305001815571	6.23094542238177	7.16193618209874	7.38990952032774	6.62200774560596	0.714834318116589	0.0323128165594551	0.21845018201813
Merged-chr5-81044077-4	chr5	81043583	81044583	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	22490.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.14905561816058	4.32082567272868	3.9698896097502	3.8477400525042	3.94920358141868	3.77294391704444	-0.883333867116203	0.0860280372623249	0.388379411020755
Merged-chr17-5599158-4	chr17	5598664	5599664	+	931.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	106564.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.36826335847933	4.02332148905102	4.06112384659753	3.91569831832941	3.66993917417439	3.93341072435498	-0.986789848577483	0.0582411017535904	0.311856848016431
Merged-chr11-102433943-2	chr11	102433443	102434443	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 5 of 13)	exon (NM_008175, exon 5 of 13)	3621.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.29452468770947	4.06359180908467	4.91849975681186	4.67879235199591	4.51201975150779	4.78036720445991	0.460534037128327	0.359714799509562	0.746001337716324
Merged-chr2-79107893-4	chr2	79107381	79108381	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147545.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	3.73686817765976	3.93404368718773	3.65961530754724	3.6890862934852	3.78325153461803	3.50224006159176	-0.383180253881493	0.494677112529444	0.832098209532918
Merged-chr1-154036961-4	chr1	154036454	154037454	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137025.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.64730817842403	5.3257056565827	5.73832205312355	5.50382568764596	5.23700542461254	5.72613387747259	-0.158536054289221	0.660283446858559	0.905906890165946
Merged-chr6-72738381-2	chr6	72737881	72738881	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	50664.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	2.8085303219383	2.85192990695991	3.0313513461257	3.34545305552812	3.27507086322609	3.54531539106313	2.29214627958763	0.00112725780587519	0.0197508670270083
Merged-chr1-85272955-1	chr1	85272455	85273455	+	684.0	f1_balb.idr	Intergenic	Intergenic	-2389.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.01026366913496	2.92066529173122	2.78210403409644	2.38025906753718	2.29475758238071	2.73186124940789	-2.39189221130569	0.176548033204786	0.556932507370203
Merged-chr5-66070067-4	chr5	66069583	66070583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28096.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.73762532395301	6.91296221355967	6.84408846098601	6.95916633639639	7.13860589230734	6.94567846355601	0.291153872928812	0.241354534185783	0.638385260200477
Merged-chr16-3872371-4	chr16	3871867	3872867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033159)	promoter-TSS (NM_001033159)	7.0	NM_001033159	71063.0	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	4.86320074228109	5.03964475171375	5.19132730882335	4.72702111973409	4.76315494179525	4.85131626586802	-0.559645417460355	0.150411213962634	0.517247822505929
Merged-chr16-35918801-4	chr16	35918262	35919262	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19708.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	6.97731967923662	7.01357630897662	6.92485020700233	7.41889059325368	7.4631956451277	7.03983886991707	0.534692886233102	0.0342726325146929	0.226581694444825
Merged-chr2-27745291-2	chr2	27744791	27745791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34708.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.539624533861	5.63439127705024	5.86774344797563	5.42301395614047	5.63177280732451	5.54733710570836	-0.25694445740688	0.4364549291529	0.799486950869076
Merged-chr2-75700147-2	chr2	75699647	75700647	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	4516.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.17543939443208	3.99730863050157	4.5853071633911	4.55693171094646	3.97783896225015	4.72230855290087	0.468065709475458	0.383102405714046	0.764535004943228
Merged-chr14-25493185-2	chr14	25492669	25493669	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	33984.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.88476494752669	4.49996839774333	4.45919560125113	4.24434106163891	4.37040281309231	4.25026697696985	-0.862845750760107	0.0594172037302559	0.315627342185083
Merged-chr6-116440184-3	chr6	116439677	116440677	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21001.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.72468436673105	4.80616571242757	4.86419609009617	4.41148823119273	4.44637983511062	4.45770856655023	-0.866770349443435	0.0360973043855039	0.233651069880125
Merged-chr2-28533308-4	chr2	28532798	28533798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145835)	promoter-TSS (NM_001145835)	-166.0	NM_001145835	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	6.11073647532329	5.50284816992341	4.9567257438158	5.8260663523442	5.31348140045474	4.84785923053048	-0.405493007834436	0.635254791829742	0.896439353901449
Merged-chr11-121713150-2	chr11	121712650	121713650	+	659.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	10723.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.48059697409872	6.54699811794575	6.40339971119871	6.33366197775332	6.49859799648081	6.34741811471199	-0.132097879257283	0.622217160408303	0.891009890820853
Merged-chr4-43466625-4	chr4	43466124	43467124	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11998.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	7.21195737240501	7.42795875297511	6.87046109080939	6.88822930595562	7.15247323306643	6.88345606182735	-0.321238162468694	0.24312781225756	0.640367862483409
Merged-chr9-71162708-4	chr9	71162218	71163218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271843)	promoter-TSS (NM_001271843)	-85.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	3.86119330421741	3.81261447867802	3.65762936442771	3.99451994491927	3.88117172217465	3.9890889983068	0.52135353913725	0.314388735830837	0.708710692372488
Merged-chr7-116370542-3	chr7	116370042	116371042	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-36352.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	3.75077188760221	3.29006635506952	3.62706930579274	3.4338766414471	3.35132346654555	3.37048921407928	-0.683054895247065	0.264369864192697	0.662276944757498
Merged-chr7-144931696-1	chr7	144931196	144932196	+	580.0	f1_c57bl6.idr	TTS (NM_001347537)	TTS (NM_001347537)	8229.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	3.87867942333602	3.93299680546816	3.91362224741132	3.89094887325595	3.74091230069377	3.7793171559631	-0.331759713226789	0.517749579208573	0.844729967743376
Merged-chr19-53311203-6	chr19	53310724	53311724	+	990.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360348)	promoter-TSS (NM_001360348)	-221.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	7.16098344849217	6.73185336421985	7.14136648378432	7.0245150451922	6.93970178417176	7.10108782206791	-0.00383762295985902	0.988413085137343	0.997390908272651
Merged-chr8-111030229-1	chr8	111029729	111030729	+	566.0	f0_c57.idr	intron (NM_001190786, intron 1 of 11)	B1_Mur1|SINE|Alu	1522.0	NM_001190786	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	4.24534917981273	4.44438067557944	4.32697574219932	5.07132156108794	5.31730855617369	4.71789125614143	1.70006036528414	0.000107993142232487	0.00302555332622248
Merged-chr4-34643363-4	chr4	34642872	34643872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28415.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	6.42686282142881	6.71434640220721	5.99596665671491	6.60585301528614	6.73925607800762	6.22623151902322	0.201606864233877	0.542382239872647	0.857115155834756
Merged-chr1-105795854-4	chr1	105795357	105796357	+	858.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	15134.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.96802299319827	5.48317661986832	5.37298507519265	5.27067789692445	5.1382728278744	5.79491569782283	0.252982374821326	0.532976610186871	0.852086026394268
Merged-chr12-85491941-2	chr12	85491441	85492441	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18051.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.55933224331727	4.30327344384473	4.79751653692332	4.86405938763475	4.32096170913255	4.86219162855742	0.330150216253295	0.482655976363473	0.825747658710697
Merged-chr4-137863756-1	chr4	137863256	137864256	+	561.0	f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	1519.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.04519525433192	4.19766241067764	3.99380802060522	3.64681020934679	3.27277233705867	3.4704336338165	-2.15595482216607	0.000266711324251188	0.00633528857216467
Merged-chr19-18625240-4	chr19	18624721	18625721	+	762.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	6592.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.84627968427286	4.45528115425362	4.82297561735979	4.6435550518662	4.50188418200332	4.70159605735197	-0.245702176739302	0.565310034016603	0.866599059240356
Merged-chr18-56924952-4	chr18	56924562	56925562	+	912.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	CpG	486.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	5.50160607479873	5.54919249675331	5.56503437102068	5.08675674959014	5.1164267714852	4.91003599493369	-0.976137129351699	0.00544091561754803	0.0650190588402895
Merged-chr9-25130578-4	chr9	25130059	25131059	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020586, exon 3 of 8)	exon (NM_020586, exon 3 of 8)	21222.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.42644133466378	4.33927199043045	4.50219106728646	4.34441848174191	4.46370775599213	4.64665861658002	0.164837560722571	0.705880021566984	0.922834459892351
Merged-chr1-69687592-4	chr1	69687097	69688097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCGCG)n|Simple_repeat|Simple_repeat	-1637.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	6.06015903403774	6.01435786188603	5.91306297274288	5.99085848859797	5.38945660579583	5.97427494588273	-0.347553394463459	0.308610467983742	0.704592120180854
Merged-chr1-184733439-4	chr1	184732925	184733925	+	914.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-932.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	6.56286388214704	6.59477185973775	6.41475483185996	5.98033490447045	6.39586867635899	6.30107651847763	-0.472081094522803	0.101803760624741	0.425710869100299
Merged-chr7-97749062-4	chr7	97748549	97749549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-10802.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	6.66181043566223	6.7105096468751	6.84370494928289	6.7840256554838	7.24872688930568	7.05225028980166	0.480579471086627	0.0722628289819865	0.353157446871531
Merged-chr6-87189968-4	chr6	87189462	87190462	+	910.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 14 of 17)	intron (NM_054041, intron 14 of 17)	85216.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.1970828768987	2.92838386477596	3.21611884096282	3.30701269432456	2.87829121333631	3.34277248077632	0.298695589738314	0.66908490125005	0.909505510225091
Merged-chr17-71256976-2	chr17	71256465	71257465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52311.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.05108038425818	6.99313494298371	6.53930555235186	4.54209043604351	4.54603704424504	4.8949858105918	-4.44670494428925	1.42782635898936e-28	5.94032878393933e-25
Merged-chr6-29768988-3	chr6	29768525	29769525	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	CpG	582.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	6.9503561899856	6.82540898946525	6.77487032081307	7.1056368142251	6.91845646842943	7.05955523228717	0.262315137838396	0.288699861353376	0.686124851873233
Merged-chr5-65696935-4	chr5	65696439	65697439	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	917.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	6.59055093903739	7.0829435291781	6.91367400899584	6.96482105162159	6.76877237082065	6.74902670616457	-0.0733882926273995	0.790296690712965	0.949368241827272
Merged-chr10-67049466-4	chr10	67048966	67049966	+	909.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44391.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.71345047086141	4.36041608118962	4.5537268046322	4.60635842673849	4.54399132259128	4.81241753364781	0.242153676588629	0.574734999125159	0.870862343796639
Merged-chr16-18392541-4	chr16	18392046	18393046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272032)	promoter-TSS (NM_001272032)	-17.0	NM_001272031	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	3.28771103383049	3.30692574857918	3.36779397971621	3.24332725032913	3.13892499110871	3.2717969509723	-0.429239005120029	0.48506225336377	0.827336504644498
Merged-chr3-58470220-4	chr3	58469745	58470745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55525.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	5.01276943111322	4.92442936252388	5.15698248673501	5.13996929534952	4.88120260219954	4.91035414490513	-0.0990420881837369	0.794099123382387	0.950561052169434
Merged-chr8-107057445-1	chr8	107056945	107057945	+	963.5	f1_balb.idr	promoter-TSS (NM_139229)	promoter-TSS (NM_139229)	568.0	NR_028367	66164.0	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	5.78824960614294	5.86661460095031	5.78655427631647	5.63753659305621	5.78563412030578	5.7976777079212	-0.133907679380508	0.661135835073384	0.906299831450979
Merged-chr16-91688827-4	chr16	91688324	91689324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021720)	promoter-TSS (NM_021720)	-74.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	7.39736173861156	7.12070861533161	7.18676435859772	7.19741343858261	6.87641337716376	7.08205424876808	-0.282896415192531	0.2642288722751	0.662167756054167
Merged-chr4-41468815-4	chr4	41468309	41469309	+	854.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	3661.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	3.84576185539884	3.63667719400511	3.75272737121173	3.47109348930041	3.39003012435691	3.72178571620615	-0.778849186523192	0.172368258403175	0.550874360596261
Merged-chr2-154791379-4	chr2	154790865	154791865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001139511, exon 1 of 8)	5' UTR (NM_001139511, exon 1 of 8)	255.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	8.15229553006363	8.16893011422619	7.99604819230104	7.9944042039996	7.82105151814662	7.96957625952643	-0.261117334282147	0.223400634944008	0.618087468987021
Merged-chr7-5102833-3	chr7	5102316	5103316	+	829.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14095.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	4.95292126387215	5.28344958730351	5.81186991405916	4.79990115115041	5.16629231198352	5.62183726943943	-0.310330955052857	0.497084206454605	0.833442633454308
Merged-chr9-83547207-2	chr9	83546707	83547707	+	890.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.76825532168141	5.78701734305233	5.77969661951623	5.31453710657946	5.08364401918225	5.09502116937192	-1.17642467696499	0.000453583899896658	0.00973479730270858
Merged-chr11-5502566-4	chr11	5502070	5503070	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-18071.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	4.48190296072603	4.50733756431907	4.62801578313744	4.65293809385996	4.41254208437854	4.84109304496254	0.240585904693294	0.57741645113746	0.872130478603118
Merged-chr16-91474966-3	chr16	91474385	91475385	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	9781.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.74338062965387	3.31245321751091	3.75532229935934	2.98798981025197	3.161570212455	3.364750002657	-1.75131040951885	0.00990520876408128	0.0998174410611209
Merged-chr2-122070184-4	chr2	122069682	122070682	+	915.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 26 of 39)	intron (NM_145531, intron 26 of 39)	41599.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	2.30494025677806	2.362014009943	2.4459034059248	2.27854399744974	2.13735905366809	2.26182915576464	-1.01351884435181	0.240182702276622	1
Merged-chr2-127006819-4	chr2	127006301	127007301	+	883.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	5.85779473119802	6.21303753953939	5.61656248611515	5.93361052740732	6.28546668175496	6.06861510863244	0.304023961917258	0.364231035474974	0.749666877743191
Merged-chr19-37550898-2	chr19	37550398	37551398	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	CpG	480.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	7.17701547319601	7.22583742051506	7.07167168730303	7.25112947252381	7.0984066014389	6.74451579138198	-0.1587795157679	0.54357908798303	0.857551302506722
Merged-chr14-61518837-4	chr14	61518337	61519337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	26149.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	3.98321562704639	3.84042465873758	3.75491759463367	3.48058190236051	3.57729968137789	4.01707267170562	-0.526764358936202	0.357492272437271	0.744062225368359
Merged-chr10-60361762-2	chr10	60361262	60362262	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	14911.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.28286119886505	6.73336780180114	6.32867939806306	6.01232967394097	6.07328958788581	6.11889136596241	-0.674211616001505	0.0240834505137809	0.182532497450582
Merged-chr7-45924171-4	chr7	45923684	45924684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	6.05475917028895	6.05195202266751	6.32760338400391	6.07754795815192	5.96493768191333	6.29391903085976	-0.0564124476689981	0.850430782142672	0.964923222479409
Merged-chr13-4934831-4	chr13	4934334	4935334	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-325670.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.0164184398942	3.0986659009472	3.05945322329868	2.9695909800674	3.11661623593032	2.88654352165973	-0.262754785070712	0.699069380816476	0.920515737149593
Merged-chr2-92458632-2	chr2	92458132	92459132	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	1162.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	4.53219531486809	4.78034082190246	4.60266252350279	4.70408135246122	4.68403520587286	4.74887988225146	0.149720609843358	0.713958454012321	0.925656547968876
Merged-chr7-126147375-4	chr7	126146873	126147873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	PB1D10|SINE|Alu	53128.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	5.91061803969615	5.82807424444313	6.30375062437547	5.87104564504042	6.31606461465662	6.21017392646757	0.222940939372957	0.493656558457935	0.831501516521617
Merged-chr12-92928373-4	chr12	92927870	92928870	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516453.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	3.65793802538641	3.66684756260073	3.42229087954685	3.68729599343004	3.9330394444422	3.92558382714537	0.858581480036316	0.126473625520739	0.475364415589921
Merged-chr11-26602368-2	chr11	26601865	26602865	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8445.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	7.47139658934408	7.23093370225374	7.18219026253787	7.49783928447454	7.61517563618896	7.20191954279629	0.227108155935951	0.369973193080208	0.754416738955496
Merged-chr11-54438072-4	chr11	54437571	54438571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-108.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	8.90644881020025	9.20202426351236	8.55189938787317	8.69299742464332	8.9332774712734	8.60695141797078	-0.226084779598769	0.367817413656933	0.752858948767399
Merged-chr17-27055787-2	chr17	27055287	27056287	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1517.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	4.93282320610351	4.8155504135454	4.98684911032095	4.7093439577601	4.81441228686637	4.67811009184308	-0.381195359137507	0.330645638177116	0.722052391188135
Merged-chr5-62858661-4	chr5	62858155	62859155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	44832.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	7.0999686277518	7.29545254202498	7.11352792559171	6.72888532711164	7.12396580470528	6.87082359050862	-0.377132539450186	0.147287047858216	0.51213793055522
Merged-chr17-56077596-3	chr17	56077053	56078053	+	769.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 1 of 11)	intron (NM_024432, intron 1 of 11)	1780.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	3.29166769736019	3.76060944683465	3.57075906787709	4.09446135358937	3.99253234185249	3.80931053997992	1.35435780906608	0.0217262807122546	0.170627689051938
Merged-chr9-63738913-3	chr9	63738420	63739420	+	724.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	19074.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.73960815953248	5.30541508472421	5.42030349706069	5.32983388986863	5.28011884344515	5.15809147237584	-0.476747403218993	0.182938922399149	0.565936046956477
Merged-chr3-130708694-4	chr3	130708165	130709165	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	779.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	6.53160681159391	6.71768965154101	6.24524254066481	6.62719366534645	6.73836462572668	6.34835038201364	0.107825137784717	0.713384513886453	0.92549344587396
Merged-chr5-101826691-4	chr5	101826197	101827197	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	61567.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	3.76610041323163	3.6951559452059	3.52596750144466	3.80721597636918	3.63163467758943	3.7085664346337	0.145452206178072	0.791252294903606	0.949694766870106
Merged-chr8-120738271-2	chr8	120737771	120738771	+	656.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301811)	promoter-TSS (NM_001301811)	-368.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.59136409714863	6.71912216923427	6.87578606589768	7.38399359656964	7.06581529860484	6.71724167023167	0.557428374145926	0.0524058417472262	0.292758559352925
Merged-chr10-128743897-4	chr10	128743418	128744418	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016811, exon 1 of 24)	5' UTR (NM_016811, exon 1 of 24)	158.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	5.46872067060542	5.6334439077574	5.78536189518783	5.02178265340574	4.91777928561857	4.75411346975694	-1.4561586793175	8.14108133709816e-05	0.00238270522651165
Merged-chr10-81298873-4	chr10	81298391	81299391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	L1MB7|LINE|L1	5928.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	8.60460540010105	8.6659108629323	8.38485607458183	8.12779316098305	8.50240585140168	8.08722759380065	-0.417866887271141	0.0761033680224135	0.363130192223949
Merged-chr15-81132829-4	chr15	81132324	81133324	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-27777.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.1284056401068	3.08023033932747	3.15544194392817	3.39120208343194	3.19421880800246	3.34093849183619	0.798211130978681	0.205051131892117	0.595694220420628
Merged-chr12-65073035-2	chr12	65072519	65073519	+	638.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013902, intron 1 of 6)	PB1D10|SINE|Alu	919.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	5.75275740675426	6.02947419962406	5.6651289614561	5.89179061397889	5.92037704144285	5.52042672724677	-0.0572186997469755	0.863384949583954	0.968253475726207
Merged-chr5-140737408-3	chr5	140736896	140737896	+	962.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13269.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.68684623574108	5.65872651771207	5.66368917077682	5.2491672006066	5.20586905083607	4.82680990079049	-1.0703749805222	0.00298511346467066	0.0419640684521569
Merged-chr1-78489781-2	chr1	78489281	78490281	+	549.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-884.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	4.99808207299093	5.38766333578904	5.10751412516576	5.3060462618774	5.10226374250458	5.33394541422746	0.128783384914831	0.729115578123135	0.930580253159337
Merged-chr9-111119841-1	chr9	111119341	111120341	+	577.666687	f0_balb.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	1730.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	5.24896619622542	4.7837311371288	4.39565406040027	4.6697398517674	4.72769186877637	4.41749410089908	-0.569770428352163	0.234470155613135	0.630591822623526
Merged-chr7-128062654-4	chr7	128062154	128063154	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082960)	promoter-TSS (NM_001082960)	14.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	4.47684711937955	4.66920481155171	4.94600734677384	4.7918612647763	4.41837989526718	4.87411498566136	-0.00562140582884853	0.98989841633342	0.997631716704471
Merged-chr11-57522435-3	chr11	57521959	57522959	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	3794.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	4.03654556544491	3.98311305963016	4.42629442269695	3.87260189136016	4.04652898552761	4.24975072179996	-0.266279077778308	0.603814669825997	0.882837513989345
Merged-chr10-81166946-2	chr10	81166446	81167446	+	855.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021501, intron 1 of 10)	intron (NM_021501, intron 1 of 10)	774.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	4.80003093979384	4.6178312464665	4.65282259681179	4.93945905583314	4.80429758964821	4.71981209763814	0.304127738572348	0.447108370271688	0.806270036091875
Merged-chr9-70656229-4	chr9	70655729	70656729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	945.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	7.54330093817155	7.96170806981032	7.63109571671446	7.61441525946807	7.89234076201758	7.65975248915459	0.00458630896503274	0.985243069578175	0.996873682039026
Merged-chr10-77608800-3	chr10	77608300	77609300	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	2202.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	6.72738322308867	6.41663922639947	5.66214373917989	6.33035486197383	5.81251670812261	5.63301799406189	-0.645602354848473	0.111980482208095	0.446976492543948
Merged-chr3-89299559-3	chr3	89299065	89300065	+	777.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-18614.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	2.94591231838759	3.08087742778995	2.86260180972929	2.98216450830553	2.66791133030079	3.05702232393111	-0.289013284570587	0.692936119478174	0.91880752705484
Merged-chr19-47432605-4	chr19	47432104	47433104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	31807.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	7.0798796841114	6.86655748647405	6.77496302506667	6.90298777692018	6.91682120638985	6.61719232944397	-0.140318877123321	0.594957589462065	0.87924603206665
Merged-chr13-100681835-4	chr13	100681337	100682337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183115, exon 4 of 12)	exon (NM_183115, exon 4 of 12)	12356.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	6.49593801311489	6.0608954237152	6.02269602647447	6.73954343226765	6.85852166292354	6.56089862136688	0.8225865317518	0.00601545192662161	0.0699080749657713
Merged-chr6-135364562-4	chr6	135364034	135365034	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288628, intron 1 of 5)	intron (NM_001288628, intron 1 of 5)	1603.0	NM_001288628	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	3.85540471923871	3.79129098801802	3.6504660207219	3.23544988507055	3.27182185877638	3.197022863437	-2.07110204675395	0.000947093711021494	0.0172479259152279
Merged-chr9-106365846-1	chr9	106365346	106366346	+	583.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-2786.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.36761618913712	3.65510471222158	4.04915449401503	3.48441084332419	3.39669011538053	4.03190185919786	-0.16867612104632	0.794896249481181	0.950940666630677
Merged-chr10-80569906-4	chr10	80569411	80570411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	7385.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	5.14055956253221	5.30434721785463	5.43338662554686	5.42090563367569	5.53015167074395	5.55220188248645	0.412790049729333	0.224327409692144	0.619090360474606
Merged-chr9-121642136-4	chr9	121641636	121642636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-40.0	NM_001357346	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	5.19873472149846	5.28813059179995	4.88117204794661	5.43390390740169	5.24205735046746	4.77932077710488	0.0953917613447403	0.816207487488059	0.956616423430214
Merged-chr5-74955659-2	chr5	74955159	74956159	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	6465.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	2.59693081444029	2.61394075534188	2.89796324432415	2.4582917144469	2.35956511658729	2.49982013778406	-1.70015906377335	0.0409798263594777	1
Merged-chr14-14351669-4	chr14	14351103	14352103	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 9 of 11)	intron (NM_008369, intron 9 of 11)	5108.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	3.86714450472466	3.93386570671756	4.32553470528654	3.88054367579344	4.43652322459637	4.65611081424552	0.840586806027412	0.124155069995227	0.471505936292233
Merged-chr10-17223442-2	chr10	17222942	17223942	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127660.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.78942132078057	3.24023721436512	3.13756943972	3.07334844560618	2.89732009334093	3.15254372458007	-0.128647655452898	0.856473155645316	0.966529239953755
Merged-chr5-112985943-3	chr5	112985423	112986423	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	29615.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	2.92166124999518	2.8982569414658	2.92637702072998	2.69332217153398	2.67175170961908	3.05564833277099	-0.518546416719728	0.48015261981102	0.824511705242598
Merged-chr17-56611556-4	chr17	56611075	56612075	+	779.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1804.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	4.55403260588689	5.06774472462939	5.34441931361279	5.22441519808072	4.99990447957062	5.54029338951839	0.502575154103231	0.252718580798297	0.650078537173211
Merged-chr4-133241571-7	chr4	133240981	133241981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016693, intron 1 of 28)	CpG	663.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	4.02894513158873	3.9798303058608	3.71816496582006	4.57573729116694	4.49108558503348	4.49207034555788	1.63469172341248	0.00103623998580124	0.0185148071158577
Merged-chr4-128769677-5	chr4	128769216	128770216	+	833.328552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001009819)	TTS (NM_001009819)	10458.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	3.71498243328718	3.57667551575151	3.30977658988197	3.29307370252717	3.0513177324054	3.06786726759208	-1.66954112967793	0.0121473313506368	0.115199351335699
Merged-chr4-11965890-2	chr4	11965390	11966390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040577)	promoter-TSS (NR_040577)	91.0	NM_001290387	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	4.67873710487285	4.56539251292407	4.74775855517171	4.57837066715449	4.27581166225768	4.73893703382328	-0.316055340071949	0.469910568343644	0.819163633846013
Merged-chr11-18970049-4	chr11	18969549	18970549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	48920.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	3.38929842049421	3.4606888882091	3.24987628175929	3.05686472186785	3.02518624954262	3.37762697229222	-0.912283823335538	0.16245825882774	0.53589809574695
Merged-chr14-21744667-2	chr14	21744167	21745167	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 4 of 7)	intron (NM_001007268, intron 4 of 7)	-1788.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	4.24118046958387	3.96936955569119	3.80278254391351	3.99434981541874	3.81672858412322	3.64702723902953	-0.587866274661542	0.281422177387092	0.679588372058658
Merged-chr3-148961098-4	chr3	148960588	148961588	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6453.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.23578351629792	6.45320267518046	5.84998764549027	5.65363543836656	5.5793280029467	5.37626251151063	-1.1785687494265	0.000473164182815903	0.0100641731400168
Merged-chr6-82969579-4	chr6	82969062	82970062	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 3 of 9)	L1MCa|LINE|L1	22640.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	4.40972028538415	4.02539359400804	3.85730926428301	4.2171398143144	3.89097938695374	3.98286128674389	-0.257657031305239	0.627725200418318	0.893339236443994
Merged-chr4-41463187-2	chr4	41462687	41463687	+	896.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 1 of 12)	MTB|LTR|ERVL-MaLR	1661.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	3.75677598524752	4.21797562609716	4.09187996871115	3.94558030580826	4.11023964704354	4.11368708500875	0.0617370174403258	0.904720890351019	0.978159081111766
Merged-chr2-173018761-4	chr2	173018267	173019267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3135.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	3.17635808437178	3.18813161285207	3.47123258416937	3.48326605427768	3.12502719459539	3.54129274152636	0.433534286150684	0.500397817851231	0.834978949366358
Merged-chr2-91883123-2	chr2	91882623	91883623	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 13 of 18)	B1_Mur2|SINE|Alu	-39066.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	3.10337009229793	3.29394530798761	3.29853147620437	3.60829016168469	3.1983664244434	3.42686524855641	0.732129118828877	0.249043611807413	0.645980886289198
Merged-chr6-116338040-4	chr6	116337545	116338545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302383)	promoter-TSS (NM_001302383)	23.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	7.14350501721964	7.11810731615237	6.91557526446658	7.00680397600494	6.61113475812477	6.30292590484197	-0.593779904307649	0.0446940122315148	0.266530450065211
Merged-chr8-83606959-2	chr8	83606459	83607459	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1216.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	3.22454998969902	3.23567769201335	3.46802667903907	3.41823752507457	3.38870216610937	3.63968865264457	0.670125510919788	0.268516319785428	0.665694542701961
Merged-chr10-43997144-2	chr10	43996644	43997644	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 2 of 20)	exon (NM_172393, exon 2 of 20)	7702.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	6.08071792966667	6.04576819491311	6.14072439386205	6.39776181449456	6.48225307634172	6.30425473187564	0.531429518345452	0.0536922284615356	0.297065426181973
Merged-chr11-117849188-4	chr11	117848698	117849698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-39.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	6.72552767637711	6.84897152082467	7.03903322552875	6.79783243688175	7.05760666163681	6.74180448288752	0.0177896403185373	0.946482787441487	0.988002063841177
Merged-chr1-136633827-4	chr1	136633316	136634316	+	881.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8915.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	6.63583803863858	6.99911949403706	6.66776955959146	6.73036297765434	7.12445571687694	6.56999277444534	0.0919916071949024	0.75547825284275	0.939315847504439
Merged-chr2-60021776-4	chr2	60021282	60022282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	103958.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.01947953551018	4.91423468744955	4.94964465535817	4.93755076708555	4.83996830102816	4.57251180626432	-0.356208397853352	0.368232701285588	0.753265422302852
Merged-chr4-155770223-6	chr4	155769696	155770696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_147776, exon 4 of 4)	3' UTR (NM_147776, exon 4 of 4)	4365.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	6.50388573065267	6.39600285014184	6.65534731839379	6.44202529956486	6.23059933282432	6.40824010003151	-0.257115796475125	0.348882343758963	0.736815707492468
Merged-chr11-95851798-2	chr11	95851320	95852320	+	984.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6997.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	7.41133938169224	6.90400971851099	7.1084178683245	7.4380489728854	7.28785302925281	6.82080538498617	0.0829128034660018	0.777352054537505	0.945092074067485
Merged-chr14-8216934-2	chr14	8216434	8217434	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305937, intron 1 of 2)	intron (NM_001305937, intron 1 of 2)	686.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	4.80211005573393	4.9454454946762	4.8169971658244	5.30632480265106	5.00534394829226	4.88377478835974	0.480038847342152	0.218680027339498	0.612833563145502
Merged-chr18-34410945-2	chr18	34410444	34411444	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_016927, intron 2 of 14)	B3|SINE|B2	1521.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	5.30477384344833	5.42832777573695	4.30035437565877	3.49097804120193	3.38115714980876	3.73445791114584	-5.62457899798729	7.78224557568545e-11	1.05808021219221e-08
Merged-chr8-106156916-2	chr8	106156415	106157415	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	6561.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	3.58730585972595	3.52809447793237	3.65200847036931	4.06156687480157	3.81092356409713	4.06917588009101	1.29259058844671	0.016590293434463	0.142607968604834
Merged-chr8-84663604-2	chr8	84663104	84664104	+	994.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-752.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	6.94006653701616	6.89787780901609	7.11221547928018	7.51659963637969	7.4820243473681	7.51179082946991	0.781591578159954	0.000764534642645003	0.0146613041127461
Merged-chr10-91138475-4	chr10	91137980	91138980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-14517.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	7.23538537436794	7.49920563787889	7.17753965792382	7.24183414011877	7.65197222357216	7.11924881174185	0.0786761676907509	0.772145049085515	0.943680976839558
Merged-chr6-106769110-4	chr6	106768623	106769623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027296)	promoter-TSS (NM_027296)	-15.0	NM_001242358	70047.0	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	7.31529447552176	7.6704859508962	6.94754402038653	7.36604675026408	7.57595396925841	6.81520747866947	-0.0772674041338376	0.810112576691672	0.954958386398407
Merged-chr16-30604688-4	chr16	30604192	30605192	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4969.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.08461838758669	4.89242276733463	4.88327884242895	4.90459222409924	4.97276572751266	4.91141499443249	-0.0617768600683586	0.870318676394192	0.970065609722504
Merged-chr4-129792603-3	chr4	129792104	129793104	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-27875.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.62742719020186	4.4354333290285	4.6232637189753	5.13604751608235	5.03176894001397	4.81259894511151	1.01878915880343	0.011506981306998	0.111035611470675
Merged-chr1-75398894-4	chr1	75398395	75399395	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085370, intron 4 of 38)	intron (NM_001085370, intron 4 of 38)	-1190.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	3.04745521282811	3.53247485259726	3.39120929530452	3.38340755517472	3.01844298074442	3.40808144523244	-0.243392650431304	0.720179778459934	0.928071578828455
Merged-chr18-25681505-7	chr18	25680894	25681894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-1646.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.1535185947056	5.55527825454185	5.29897084665608	4.39874018871968	4.38143731353715	5.11629648757279	-1.48666409543126	0.00109814888111914	0.0193672683552694
Merged-chr9-25482005-3	chr9	25481511	25482511	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 1 of 7)	intron (NM_026189, intron 1 of 7)	414.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.77900561432675	7.82546337133873	7.36288850796395	7.67251458089399	7.68641927209608	7.37409261094246	-0.128872805693593	0.613056121442843	0.886981164525327
Merged-chr9-95856971-2	chr9	95856471	95857471	+	789.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	546.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	4.57341840551077	4.5941004444774	4.29734868901809	4.50634295587567	4.5741229655624	4.3188665647185	-0.0627054190741664	0.88769021593031	0.973836995667151
Merged-chr1-128746903-2	chr1	128746393	128747393	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154594.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.5376146609088	4.58182518779402	4.35275565981642	3.39126315821971	3.37262651279086	3.61134597436608	-3.75477597187365	5.09453069114263e-09	4.95216950640884e-07
Merged-chr7-126630134-4	chr7	126629613	126630613	+	828.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4643.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	3.3486722746745	3.45507491404991	3.67912858369593	3.51561440196109	3.48705643059688	3.37584494435256	-0.112081353511799	0.849554444000098	0.964686793473289
Merged-chr1-58747005-2	chr1	58746505	58747505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	16453.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	3.24688564970015	3.13127958341403	3.66234024882081	3.3702343995307	3.26435137813985	3.63492094176904	0.25616387283423	0.693344518787642	0.918930871220844
Merged-chr5-102043929-3	chr5	102043425	102044425	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	25996.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.97640446352264	3.95234028551119	4.19786880395875	4.3152104961542	4.00559596859581	4.30865209477593	0.487931505425192	0.320542011279959	0.714352298545988
Merged-chr18-15195263-2	chr18	15194763	15195763	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43817.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	3.45110726542746	3.63024336337257	4.0386677297169	3.72826770569899	3.8768347529869	3.92529964099991	0.402326510990455	0.482573359290568	0.825720538770068
Merged-chr12-72084374-4	chr12	72083867	72084867	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026038, intron 1 of 4)	intron (NM_026038, intron 1 of 4)	946.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	4.91656231279541	4.83134551690837	5.07222218712677	4.95929202039399	4.95756699604581	4.73201361211348	-0.0899666291489405	0.816567581887717	0.956731571947764
Merged-chr16-91378203-2	chr16	91377703	91378703	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	5420.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.21628874579852	6.5325573591303	6.59577608887064	6.21457739649912	6.4181463251838	6.00470058626926	-0.358325685765064	0.235880860222028	0.632237296010646
Merged-chr11-69996285-4	chr11	69995790	69996790	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291126)	promoter-TSS (NM_001291126)	524.0	NM_030064	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	6.96159710386268	6.52722205558733	7.19646445919101	7.46946022405433	7.52691482230092	7.7458267217715	0.995752224873517	0.000392043846639542	0.0086505394832095
Merged-chr19-34522250-6	chr19	34521753	34522753	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5221.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	7.91409014201693	8.16423972503902	7.85292321708692	8.01869520578973	8.51697115334402	7.85858520813238	0.261451636572284	0.328548148421321	0.720744380011634
Merged-chr1-156471278-4	chr1	156470783	156471783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3045.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.88095574221919	8.02944456583608	7.61626668637489	7.83482638868546	8.02167880592093	7.68240916295993	-0.000313344559735494	0.998970329000205	0.999835488061117
Merged-chr8-84076285-2	chr8	84075785	84076785	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 2 of 20)	intron (NM_009055, intron 2 of 20)	9449.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	3.33534239058244	3.37588332040035	3.49475849646217	3.12641549812556	2.92056032469147	3.51374500698147	-0.801980034331009	0.23965118470756	0.636615320201993
Merged-chr7-25710041-2	chr7	25709541	25710541	+	937.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9012.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.16401101960374	5.45633632483649	5.98477443566581	5.09031804540231	5.17791550956002	5.21531009730465	-0.799622158232636	0.0448438351256962	0.267036307229204
Merged-chr5-43818894-4	chr5	43818430	43819430	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009763)	promoter-TSS (NM_009763)	37.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	2.38074281664426	2.62545009732337	2.5256213529244	2.25348619854872	2.21156809911087	2.34206018079491	-1.70860709057025	0.0513941996457112	1
Merged-chr18-77946957-4	chr18	77946463	77947463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	MTE-int|LTR|ERVL-MaLR	8496.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	5.43584158522772	5.20541740063771	5.07839814129517	6.1316946018507	6.26557122587892	5.78810239522192	1.5183649856338	1.23712408617233e-05	0.000481021593281436
Merged-chr2-180920471-2	chr2	180919957	180920957	+	993.5	f0_c57.idr|f1_balb.idr	intron (NM_173761, intron 1 of 4)	CpG	479.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	8.25357877397433	8.51979512444758	7.91503549305461	8.21382994528224	8.03063458572461	7.95501189315451	-0.264660660492115	0.290856480731658	0.688664305177637
Merged-chr12-85490957-2	chr12	85490457	85491457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17067.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.39132552756159	6.29795547007466	6.86779342132382	6.49530335113168	6.44145052168405	6.80236743817139	0.0795068209628861	0.794789645410298	0.950867819055357
Merged-chr14-77909092-4	chr14	77908589	77909589	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4850.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.06938925089301	4.23468962267462	4.42454705464417	4.40888123055256	4.33059372210757	4.18110078964507	0.19369232694585	0.678635040458475	0.913513936154101
Merged-chr5-65974215-2	chr5	65973715	65974715	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	intron (NM_001081104, intron 4 of 4)	7091.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.86932846200311	4.98963715646209	5.06960063583802	5.04057252975391	5.01173364165677	5.13355754201179	0.181997477906539	0.622151383239096	0.890969008425704
Merged-chr5-115159329-1	chr5	115158829	115159829	+	718.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1153.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	6.74364184837967	6.65427668280916	6.2700306675655	6.33070998424732	6.71501447790435	6.24435732336318	-0.195145157407475	0.525748070507451	0.849127238910141
Merged-chr10-118083207-4	chr10	118082703	118083703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58584.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.76771936921966	7.5188163139129	7.39782673265699	7.54442511338549	7.66489226860454	7.06890403457603	-0.165318805742411	0.54399341977835	0.857551302506722
Merged-chr11-102438410-4	chr11	102437865	102438865	+	839.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199200, exon 8 of 8)	exon (NM_199200, exon 8 of 8)	8043.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	3.40174957580029	3.26508445354954	3.1202045584667	3.26607360869228	3.17154680469994	3.25328727079942	-0.181461287437375	0.773802979643748	0.944186409608656
Merged-chr16-38456803-4	chr16	38456339	38457339	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2094.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	6.80601666742136	6.50022918506409	6.73332746650465	6.58245493812852	6.64506188753714	6.54544086989974	-0.141156861633784	0.594447824595849	0.87905784425982
Merged-chr1-45869545-2	chr1	45869045	45870045	+	589.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56049.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.04649168210737	7.02716784061517	7.12274790385341	7.13407227541973	7.1602929575685	6.89603219012658	0.0203317257277241	0.93345327144663	0.985469699179496
Merged-chr16-44119922-4	chr16	44119421	44120421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19338.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	8.2065497292469	8.33679350037769	7.89459757612125	7.96725034375541	8.17502357714245	7.61412131328628	-0.305583438432995	0.240654502937409	0.637714978289328
Merged-chr4-144897293-2	chr4	144896793	144897793	+	905.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	4156.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.93740885837855	6.46466423364608	6.17066158741385	6.23870356818743	6.18093607521646	6.00632913593288	-0.107045122488636	0.731284580969863	0.931357644172417
Merged-chr4-15986683-4	chr4	15986184	15987184	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 13 of 15)	intron (NM_013752, intron 13 of 15)	27154.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	4.02612313933065	4.35083177223797	3.72484911236679	4.28282594854233	4.32412359690098	4.02457151688469	0.420482889490945	0.439118170838043	0.80095471312154
Merged-chr16-21998155-3	chr16	21997671	21998671	+	805.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	2.73311084948861	2.78338130962952	2.9233026177401	2.73057647866001	2.54958404115686	2.99519643843327	-0.245969986159294	0.745896648357005	0.936251303305737
Merged-chr19-16067402-3	chr19	16066903	16067903	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65428.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.43663179262237	4.26912189452349	4.51337741271382	4.65812182746593	4.63596616950592	4.31385188691068	0.375558862071106	0.397747136458019	0.774593722474986
Merged-chr11-69091980-2	chr11	69091480	69092480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009497, exon 5 of 5)	3' UTR (NM_009497, exon 5 of 5)	3452.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	3.65018737087658	3.42513198931054	3.71845044071643	3.4776067945463	3.38007754434719	3.88136606390881	-0.0395104619938347	0.947506300332701	0.988008807662239
Merged-chr17-26562812-2	chr17	26562312	26563312	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	1300.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.80073883420886	2.72373579770838	2.94335942328523	2.65229906801366	2.64306844826	2.71733121647743	-0.815836964374855	0.26907696535045	0.666214554689947
Merged-chr4-156050036-2	chr4	156049536	156050536	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029264, intron 2 of 14)	intron (NM_029264, intron 2 of 14)	781.0	NM_029264	330010.0	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	2.4697653130815	2.59587739378155	2.69280241803802	2.77933657889967	2.46212616065423	2.51276838932842	0.034354116388089	0.965608323009279	1
Merged-chr1-157139502-3	chr1	157138968	157139968	+	877.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-30788.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	2.88032466131465	2.82813188526455	2.96396790371492	2.81038616909348	2.54543858509002	2.60073165820848	-1.2581336490813	0.100478194064099	0.422764440315816
Merged-chr5-20882319-4	chr5	20881827	20882827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	-126.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	7.14226923910418	7.33307329872726	7.18381748376227	7.22710521661288	7.20379156461269	6.91961083042871	-0.138494457812471	0.57499783742438	0.87094931637326
Merged-chr2-75846446-4	chr2	75845947	75846947	+	657.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 1 of 19)	B1_Mus1|SINE|Alu	14270.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	3.08338216200038	3.14621600013502	3.04530699732254	3.34435792732811	3.12725877180514	3.17920678635764	0.533952516443074	0.407595728200093	0.781745006271282
Merged-chr7-141576319-2	chr7	141575819	141576819	+	763.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	14139.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	4.23612683251269	4.66585923915801	4.9675875797011	4.24102435174252	4.45077740353693	4.86948033751943	-0.264541175562132	0.597897626559523	0.880491661353492
Merged-chr13-33074283-2	chr13	33073786	33074786	+	852.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9817.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	2.81547207017666	2.70408874221829	3.03291145503242	2.89127148575717	3.11963456037383	3.37374369553373	1.33878065655138	0.0668347273236205	0.337922099480089
Merged-chr11-86746253-4	chr11	86745731	86746731	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11336.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	7.14071835707176	6.83780812624248	7.03984205986515	6.79148322991697	7.29682312427367	7.14812115572025	0.135280192912473	0.620397569721726	0.890068302891401
Merged-chr12-85341340-4	chr12	85340834	85341834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-1972.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.4533713630084	6.27419907314793	6.08200515630182	6.67096837037671	6.7657172947068	6.27871662702836	0.505977402286998	0.0906683801165171	0.400621283981532
Merged-chr16-33621528-3	chr16	33621030	33622030	+	659.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134251, intron 8 of 12)	intron (NM_134251, intron 8 of 12)	-62936.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.49279871368067	4.47409120397523	4.13619995561183	4.44266098839424	4.59444874173114	4.65378109839733	0.439395431809427	0.329490044685064	0.721399184090983
Merged-chr11-80209023-4	chr11	80208514	80209514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-41.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	6.83695527710852	6.83102003859838	6.87403248049266	6.78911166065819	6.36987965662764	6.74047407847388	-0.327209766335056	0.226542780319304	0.621496371437256
Merged-chr16-44025956-2	chr16	44025456	44026456	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	RMER20B|LTR|ERVK	1989.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	5.53912216789429	5.87782725140336	5.18077791645804	5.6969470273916	5.88844354091058	5.45459434011002	0.226425382682674	0.547816814726568	0.859445606128575
Merged-chr17-24352783-3	chr17	24352275	24353275	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039581, intron 1 of 31)	intron (NM_001039581, intron 1 of 31)	752.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	7.20039997959618	7.50141422344816	7.3212215257589	6.37103231335605	6.30271185020142	6.41275241368039	-1.53784810990717	1.93097699033128e-09	2.02104067184258e-07
Merged-chr17-88025398-2	chr17	88024898	88025898	+	785.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	39534.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	2.47987719788883	2.18092571541773	2.59692164149579	2.51793223443097	2.36142225518715	2.67064393883421	0.54353132722277	0.53362902812077	1
Merged-chr11-103320422-4	chr11	103319942	103320942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24260.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.6390447894274	3.22614439170359	3.29208427042472	3.86472941386471	3.29976532685356	3.48546969414585	0.609924093223492	0.35067286347237	0.73864738434572
Merged-chr14-26971659-4	chr14	26971151	26972151	+	910.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	4.38556185479155	4.63185304647069	4.86673084880242	4.47555044689955	4.58555919332047	4.47240384733019	-0.284318800907639	0.517653082824531	0.844715297124268
Merged-chr7-114562804-8	chr7	114562310	114563310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177382, exon 1 of 5)	exon (NM_177382, exon 1 of 5)	162.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	6.37209825850734	6.50623821728937	6.54208510153659	6.45512374316028	6.43152118493323	6.532721071995	-0.00325718498859717	0.99016499621903	0.997742104481084
Merged-chr19-5802580-4	chr19	5802080	5803080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	92.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.92192315775763	7.99252527631048	7.77476387091119	7.99686246282136	8.5264306483995	7.75941581340273	0.345894019087535	0.207857079271946	0.59868364609575
Merged-chr1-184618235-4	chr1	184617735	184618735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60544.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.09063652707979	6.79082773927873	6.78454460248836	6.55720497556153	6.81420509639112	6.79743439819972	-0.267690389793345	0.315948863218931	0.710146362792292
Merged-chr16-95839704-4	chr16	95839218	95840218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	58995.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.83550449099582	4.71752286722199	4.28630900373631	4.21686546232212	4.56652747583159	4.15243824842668	-0.755532215717804	0.124250294172512	0.471601469447498
Merged-chr8-125756765-4	chr8	125756255	125757255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	22552.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.60144349528743	5.8576851386337	5.81390435705763	5.53491431090772	5.3855999100825	5.61956116843145	-0.470536354707335	0.148223823775142	0.513762236213799
Merged-chr11-95688094-2	chr11	95687594	95688594	+	902.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21137.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	6.79367851614103	6.79934127280495	7.03026414498646	6.80139813338097	6.93114644364068	6.91461795220402	0.0195127696429313	0.938032526492055	0.98625187415669
Merged-chr15-55547324-4	chr15	55546830	55547830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 3 of 6)	B3|SINE|B2	9982.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	3.08335061942689	2.8811774062577	2.87930373497696	3.21862712859959	2.88622855605624	3.25059444542926	0.764744138770731	0.276984429224934	0.674327258026121
Merged-chr15-85879287-4	chr15	85878795	85879795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028063)	promoter-TSS (NM_028063)	-32.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	5.6092264426795	5.78407986117188	5.66101409786464	5.58602068791	5.58751690606629	5.52707474064707	-0.222192531950542	0.483111752237215	0.826011835108275
Merged-chr16-27395390-2	chr16	27394890	27395890	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	6434.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	5.13311473135756	5.53371751121226	5.5512955356991	5.62984415420358	5.8997651112141	5.66850285377044	0.617374712359456	0.074999085910936	0.360557195544093
Merged-chr11-72461796-4	chr11	72461279	72462279	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 3 of 12)	L1ME3Cz|LINE|L1	13248.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	6.20082022708449	6.20242280479787	6.22459646093542	6.17122427880986	6.21458926611513	6.72658036810062	0.291226525326251	0.340626542834428	0.73029769070258
Merged-chr14-22802506-2	chr14	22802006	22803006	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-259708.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	3.12744741254449	3.44447791333201	3.22423602840613	3.18254968911858	3.52898515833889	3.29678155719977	0.292435804824543	0.651928621044196	0.902896807825606
Merged-chr2-180115876-4	chr2	180115373	180116373	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3493.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	4.74170970901536	4.92399964997034	4.98115027566777	4.92679935488494	4.49774252867373	4.79372840870644	-0.313293998827449	0.448889631759272	0.807454029128485
Merged-chr13-43777544-4	chr13	43777026	43778026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7586.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.40891254421816	7.25685052933228	7.29170249119554	6.94401613574892	7.14311723767309	6.88312073259068	-0.478000196875043	0.049899977478378	0.284310964531695
Merged-chr5-117884579-4	chr5	117884071	117885071	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	ORR1E|LTR|ERVL-MaLR	17732.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	5.73943651630982	5.42858840536988	5.97374791041913	5.6341800872994	5.33671733439129	5.58095136691285	-0.388092721389324	0.271436444069138	0.668778286616632
Merged-chr11-76481700-2	chr11	76481200	76482200	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12795.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.54254863881264	6.3634747073081	7.01746306547903	6.28711108471522	6.67069209192638	6.62996785614402	-0.190587251851589	0.543614408136471	0.857551302506722
Merged-chr10-84438208-4	chr10	84437714	84438714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	2257.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.11429569006626	4.33888814051566	3.92323210319234	4.10634971044339	3.99745768024326	3.99415166839385	-0.323958882383863	0.516871177322878	0.844321671216418
Merged-chr7-136894477-4	chr7	136893981	136894981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008598)	promoter-TSS (NM_008598)	-130.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	5.34754741720274	5.22166425708787	4.89790953900829	5.01249586217046	5.06165226203956	5.03970245703089	-0.297532784005959	0.429940581825581	0.795961640506017
Merged-chr8-35380130-4	chr8	35379626	35380626	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	4385.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.11356760638898	4.69963481729748	5.22494694675339	4.91360917875449	4.93538905901237	4.59656278414941	-0.418453028751516	0.322011144372821	0.715384462470548
Merged-chr5-114923125-4	chr5	114922648	114923648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-92.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	8.40868415704388	8.72479690477501	7.86090464060864	8.3627130523566	8.95697604093174	7.93419620311106	0.152268608554233	0.773378519476494	0.944067559391607
Merged-chr13-94476496-3	chr13	94476040	94477040	+	893.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 17 of 26)	intron (NM_009680, intron 17 of 26)	117580.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	2.83984586025498	2.64584145098378	2.77810267122674	2.74007366751528	2.51058349567703	2.5983374868123	-0.764003854433286	0.319107311370825	1
Merged-chr17-47738555-5	chr17	47738150	47739150	+	865.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	719.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.05504518717285	6.0827311977582	5.93821787654757	6.08173515036827	5.76348473601125	5.7439684096209	-0.274644240751236	0.37084766170824	0.755074250223784
Merged-chr7-58686805-4	chr7	58686297	58687297	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	MTD|LTR|ERVL-MaLR	28595.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	2.79537996045511	3.00541408986591	2.78672089336064	3.03674281590946	3.16444710011343	3.22344438715439	1.25892747511706	0.0751605899646594	0.361020745239241
Merged-chr17-33952166-1	chr17	33951666	33952666	+	725.0	f1_c57bl6.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	-678.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	4.7135121928288	4.54539473435684	5.06761998597035	4.45246460749645	4.49998594856704	4.87185087339887	-0.401363634703875	0.368500001822013	0.75342526848677
Merged-chr2-167906489-2	chr2	167905989	167906989	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25838.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.63028105823671	3.6779716356397	3.81772522962021	3.60387335883497	3.39091692447713	3.46968016348576	-0.774713356413567	0.172674020026786	0.551274214725426
Merged-chr2-27764345-5	chr2	27763848	27764848	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53765.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.77027584981009	6.52173202065254	6.556984153983	6.45038936311175	6.40776221593551	6.59916232986135	-0.227849983420658	0.395626713518052	0.772943257633586
Merged-chr17-86753565-4	chr17	86753060	86754060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010137)	promoter-TSS (NM_010137)	-304.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	6.21425609426305	6.43285451319155	6.4083304681397	5.73214272505887	5.34869614082282	5.5954216282188	-1.39684545848846	8.46219309689042e-06	0.000346200870700818
Merged-chr10-121377132-4	chr10	121376648	121377648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 5 of 13)	intron (NM_029364, intron 5 of 13)	12058.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.15169076832519	7.17924116716299	6.77489017369905	6.6394559896583	6.75100883136398	6.4243637252411	-0.673458912141947	0.0142825279104709	0.128475165586932
Merged-chr11-108235539-3	chr11	108235042	108236042	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	108346.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.3549810455416	3.40637632801251	3.65340009009806	3.41383296312307	3.30966472997776	3.52122500708737	-0.224325678907346	0.706945439800502	0.923161381966479
Merged-chr18-77793923-2	chr18	77793423	77794423	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013831)	promoter-TSS (NM_013831)	-627.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	2.95160601729339	3.08316671702826	2.99046147368312	2.85780234801879	2.944506014856	2.81561529050108	-0.636973612685553	0.35998499094056	0.746247567856252
Merged-chr5-149267110-4	chr5	149266613	149267613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2109.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	7.60822212699803	7.97726534758716	7.45899190042737	7.23480066222925	7.67446283178444	7.35126829964424	-0.387064269913797	0.153928953088477	0.523087753015605
Merged-chr5-34531071-2	chr5	34530634	34531634	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	5350.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.75781188624522	6.02804332166106	6.27356763496	5.7908309633124	5.93917140218549	6.23923151066386	-0.0561661837108202	0.864454404502198	0.968278303984855
Merged-chr19-44407534-3	chr19	44407027	44408027	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009127, exon 1 of 6)	5' UTR (NM_009127, exon 1 of 6)	182.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.25663850868958	4.42128623393138	4.62733747910832	4.70331217731272	4.63370606931134	4.15421249668524	0.227783088907305	0.631104591091451	0.895025750196643
Merged-chr1-134803791-4	chr1	134803275	134804275	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015606)	promoter-TSS (NR_015606)	-54.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	5.19885446388783	5.41184010444693	5.46968238694149	5.04604622466556	5.07749355998097	5.33084283900983	-0.429818823983135	0.231833359325215	0.627997299394922
Merged-chr17-27635332-4	chr17	27634822	27635822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025963)	promoter-TSS (NM_025963)	-80.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	6.16818665144135	6.18788786864312	6.36198217863539	6.36776772035407	6.28052876836106	6.13910655878358	0.0591813986292975	0.833013296460327	0.960900298881182
Merged-chr9-4310932-4	chr9	4310434	4311434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 1 of 2)	L2|LINE|L2	1118.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	6.09398718474654	6.07434291013946	5.57529395122986	5.98243421641199	6.40195154897667	6.1107431621757	0.401838950898965	0.228435078639836	0.623568861080751
Merged-chr1-74372465-2	chr1	74371965	74372965	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2738.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	3.37441925283976	3.23107390262462	3.56572483736335	3.48888083297979	3.19456957866462	3.47986441506565	-0.006634560801283	0.991461117127013	0.99826611332009
Merged-chr15-66578535-3	chr15	66578067	66579067	+	665.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081409, intron 1 of 20)	intron (NM_001081409, intron 1 of 20)	995.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	5.92840772281692	6.18391649884472	5.99263371946892	5.8618196554457	6.24690799913341	5.85834735339144	-0.0463666210732454	0.883222688433375	0.973347392063704
Merged-chr16-4464855-4	chr16	4464316	4465316	+	920.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44318.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	4.57640796058978	4.64276007231681	4.54214352649772	4.83355389235884	4.44540192851151	4.842869366898	0.285051229857479	0.505264733436061	0.838055364884185
Merged-chr15-100678742-4	chr15	100678250	100679250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	9170.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	7.07470374396638	6.85813420537587	7.21262915030326	6.70245812575292	7.31612041474587	7.16491358963265	0.0601674196797154	0.833674478893993	0.961104751385188
Merged-chr7-81864162-2	chr7	81863702	81864702	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	1515.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.70494756172076	4.82865320666716	5.09811954584024	4.63678602813274	4.8895820462554	4.92959825384011	-0.11871164861366	0.770527131948036	0.943392092118189
Merged-chr11-20740614-4	chr11	20740106	20741106	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	950.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	7.76068897341198	8.09709783472602	7.75101883852886	8.05151930072173	8.22058444630394	7.97205092969554	0.290421442155739	0.215865771933948	0.609244934233767
Merged-chr2-91193810-2	chr2	91193310	91194310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 1 of 9)	intron (NM_001355279, intron 1 of 9)	1225.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	5.54779943792815	5.85604037534917	6.08711558995764	6.30595047445944	6.36851451621924	6.56944126179782	0.981758752030744	0.00169481670436834	0.0271719283886476
Merged-chr10-12728568-2	chr10	12728068	12729068	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 14 of 73)	intron (NM_011682, intron 14 of 73)	133167.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.36436123616073	3.22393753581008	3.36646706428418	3.16254396638233	3.40850483939162	3.49035148585738	0.1635073808923	0.791144493912298	0.949694766870106
Merged-chr2-71103486-3	chr2	71102984	71103984	+	883.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14570.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	3.72744052747805	3.20526299881115	3.60114743831978	3.52302026709549	3.27876071844642	3.280508407874	-0.608596361506386	0.342180448634172	0.731283521951228
Merged-chr11-54788468-3	chr11	54787964	54788964	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	-761.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.64536817712749	4.74343221634138	4.69610094901281	4.38939178917993	4.64845495872931	4.68413806306534	-0.276478969188063	0.507345089834365	0.838967570947531
Merged-chr8-123236271-4	chr8	123235762	123236762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357300)	promoter-TSS (NM_001357300)	-4.0	NM_030176	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	5.24183994195724	5.14387904579778	4.81186024554919	5.07711084757693	5.14568234393184	5.10540289598177	0.0409001907749528	0.913799383621575	0.980798450962076
Merged-chr2-160026048-3	chr2	160025542	160026542	+	712.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 2 of 3)	intron (NR_040499, intron 2 of 3)	9389.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.50930429616908	3.59245198263308	3.48787659789802	3.07642791005182	3.06021009143296	3.39662354231816	-1.45729732616852	0.0231017504694696	0.177690003056353
Merged-chr1-151615842-4	chr1	151615335	151616335	+	876.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	44462.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.98246689272096	5.75468672884733	5.58532633315349	5.5495906988557	5.94902924294468	5.67687116725466	-0.0842056613217383	0.802519791003932	0.953208478742901
Merged-chr4-53134271-4	chr4	53133775	53134775	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	25620.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.03845899638662	7.10127356749922	7.34877668348492	7.06605444415623	7.06705961407092	7.20680820668831	-0.0772284741208708	0.753188674416226	0.938549578325581
Merged-chr11-109410751-4	chr11	109410193	109411193	+	949.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15253.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.19319194429436	4.1599419895267	4.35566370697345	4.61601128209593	4.28498548642432	4.54744767480297	0.659639932304529	0.148145927090091	0.513628453046031
Merged-chr17-5189866-4	chr17	5189360	5190360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	CpG	194786.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	7.90801076742707	8.09596768742789	8.04221289483514	7.76434582389343	8.03607849712449	7.6473149674261	-0.259996804585241	0.265078552867807	0.662839771217229
Merged-chr12-73964458-4	chr12	73963943	73964943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-87.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	7.1256578973877	7.51548839367089	7.22056823313113	7.46455805609774	7.53525263324305	7.38150285220844	0.239100201507785	0.332178347248187	0.723387053255178
Merged-chr10-7589818-4	chr10	7589325	7590325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359742)	promoter-TSS (NM_001359742)	25.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	5.47981415547175	5.65934593811829	5.29639720533097	5.71877405797522	5.83825261202334	5.71935468320997	0.489967117461441	0.136614118590528	0.493740502092718
Merged-chr11-87214378-2	chr11	87213878	87214878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	87303.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	2.07661117511735	2.04743899752096	2.01906762399168	2.16948065704413	2.01342663711471	2.35901447318361	0.992983721950623	0.282715495176307	1
Merged-chr5-123831994-4	chr5	123831514	123832514	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33502.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.68445016676591	4.13447149062123	4.2088707847135	5.17308082399074	5.16119119970177	4.66706239685324	1.51315056150387	0.00164951104857017	0.0266468965509482
Merged-chr19-34752894-3	chr19	34752398	34753398	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5787.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	3.83633209751353	3.76484884661608	3.66133590629213	3.87983907799423	4.05609282630367	3.55919711572807	0.316261738662856	0.572826920874207	0.869934493236159
Merged-chr8-105609820-2	chr8	105609320	105610320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	L2|LINE|L2	4591.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	4.39769544167183	4.46319678120036	4.74353015941699	4.25829403787893	4.29981275459261	4.70071695647035	-0.279117350006773	0.544416129741546	0.857674183000447
Merged-chr4-133753860-2	chr4	133753360	133754360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-249.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.45225339443375	7.07278951693332	7.30243421748911	7.38432019835926	6.92888075775	7.53319370819216	0.0218973025689912	0.937927817820087	0.986214495225489
Merged-chr9-77917287-4	chr9	77916775	77917775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-90.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	7.50223460951007	7.4695761024787	7.2344019744975	7.31727375434495	7.395639709923	7.34951153387313	-0.086732197789772	0.70966184939585	0.92401439884764
Merged-chr6-39573942-4	chr6	39573476	39574476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178873)	promoter-TSS (NM_178873)	100.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	5.84163912242301	6.25965569022073	6.22006259255332	5.87711683335561	6.08826158494348	5.77547345065595	-0.323693890809936	0.310520267536493	0.705856787750202
Merged-chr9-90043069-4	chr9	90042555	90043555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-11212.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	6.86525422851966	6.87014609646249	6.66298704655666	7.65243717911861	7.93935535068769	7.39780215136388	1.31281648105678	6.55312771490943e-07	3.71945873739553e-05
Merged-chr1-182124725-4	chr1	182124252	182125252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012058)	promoter-TSS (NM_012058)	15.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	7.73801046896273	7.7633267199179	7.633046501015	7.50359200373235	7.57968668167113	7.45221194598372	-0.289864119526169	0.188096944547622	0.57352205966475
Merged-chr7-127274096-4	chr7	127273598	127274598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-39.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	7.91648264594478	8.03629613979355	7.31863783660223	7.79820887854034	7.8428133164596	7.03690400623502	-0.261928700113791	0.419897905544365	0.789348043413415
Merged-chr7-120836641-2	chr7	120836141	120837141	+	982.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6190.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.28828272943635	4.24593759457496	4.45764779536744	4.51782900346309	4.32993361186611	4.11522882754765	0.026595546182193	0.954352531880057	0.989554449614642
Merged-chr11-73323422-2	chr11	73322922	73323922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	1215.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	5.65875679131296	6.05235104246046	5.24894495362206	5.27751172143212	5.56388018059511	5.38235558076783	-0.542689642076787	0.157601210607935	0.529063009716043
Merged-chr3-59220187-3	chr3	59219689	59220689	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357007, intron 1 of 2)	intron (NM_001357007, intron 1 of 2)	-9307.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.02542631205994	6.33830777120212	6.06838667431114	6.27689064316686	6.56535877249444	6.10665196002793	0.309603877220959	0.312556978091383	0.707190484237326
Merged-chr2-32711781-1	chr2	32711281	32712281	+	540.0	f1_balb.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	1003.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	5.16258991066402	5.31188883919143	5.44307951303189	5.04737565543652	5.32287687119327	5.55929330374129	0.029578398262671	0.935917025271049	0.986006556497809
Merged-chr15-66814163-4	chr15	66813674	66814674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	17655.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	7.79249740668772	7.89206572514836	7.85316108463161	7.49583083211578	7.66783162069327	7.66314006186708	-0.338887697334619	0.121333280321443	0.465849925663833
Merged-chr9-108710922-4	chr9	108710410	108711410	+	953.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	18767.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	3.48643861096668	3.66230559774307	3.6795930538136	3.72974674714506	3.73706313620613	3.74947539725213	0.438248886793345	0.420056604731778	0.789438387352498
Merged-chr2-121955375-4	chr2	121954879	121955879	+	901.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-622.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	5.37378757694944	5.48564132174439	5.35319388483829	5.48527691519801	5.53783055765944	5.253714122181	0.0633748316960023	0.851918381365255	0.96531854415899
Merged-chr8-66438690-4	chr8	66438190	66439190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	47840.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	6.29527822726482	5.99986953625015	6.43253595147033	6.14394274395845	6.38168271580985	6.49171871703872	0.161998877901942	0.589215091901379	0.87677329959816
Merged-chr18-42262235-4	chr18	42261731	42262731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134137)	promoter-TSS (NM_134137)	-160.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	6.15482050316391	6.18752290161171	6.04195624649847	6.21526755996582	6.41621334909655	6.00844693329201	0.173558799994904	0.556192302592641	0.86357390983939
Merged-chr14-32786335-2	chr14	32785835	32786835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	372.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	6.28294366128856	6.10163323895417	6.39318932048971	6.54647597466697	6.36011607798003	6.25819844077647	0.230671383887254	0.416825829581023	0.787693011303642
Merged-chr6-124830534-2	chr6	124830034	124831034	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013538, exon 2 of 6)	exon (NM_013538, exon 2 of 6)	358.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	5.516911853025	5.72395985652787	5.51659009319768	5.6155476629711	5.78477031369133	5.52052035311971	0.111122852828638	0.734127139533841	0.932325051544019
Merged-chr2-160044722-4	chr2	160044238	160045238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	28085.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.22457301843023	5.81508239807036	5.86158033134192	5.4176292052856	5.51922167276267	5.8505320138538	-0.696898101355275	0.039761273078404	0.247973018311186
Merged-chr10-40123405-2	chr10	40122905	40123905	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	18849.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	2.76157433060817	2.83760027899498	2.89026649926602	2.80498280742536	2.77918549068495	2.8424910273645	-0.108425544349273	0.87779129368087	0.971744847392971
Merged-chr2-26931088-2	chr2	26930625	26931625	+	589.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2386.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	5.22151318019712	5.05766200397104	5.16405991264501	5.00455326843667	5.15443648463157	5.16220267950579	-0.0815229303877201	0.820927490143523	0.957917721861197
Merged-chr17-67354601-4	chr17	67354110	67355110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-119.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.43149825240787	8.42664149542478	8.16320676087826	8.16551771375855	8.19769991160129	7.96290318281108	-0.327853729301359	0.136895308624721	0.494310206464419
Merged-chr19-23687417-4	chr19	23686939	23687939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028208)	promoter-TSS (NM_028208)	39.0	NM_028208	72351.0	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	6.45337557635245	6.49684869535298	6.61078751231266	6.67521548671691	6.19154659938567	6.46395229784204	-0.104136148640767	0.717137229146661	0.926979087819795
Merged-chr13-12896823-2	chr13	12896323	12897323	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-96744.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	2.991101568278	2.74300178346874	2.94482354910488	3.06242857503244	3.10703678759087	3.35601951700174	1.29127948215392	0.0652329306146801	0.332979675515999
Merged-chr5-45923191-5	chr5	45922676	45923676	+	862.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9233.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.62445697479284	3.9579368769533	3.8794162086297	4.479998950296	4.4099255355866	4.24886506546721	1.61341812779809	0.0015098948088554	0.0248434017041552
Merged-chr7-126593962-2	chr7	126593462	126594462	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145636, intron 1 of 4)	intron (NM_145636, intron 1 of 4)	948.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	4.49768851971194	4.43347014011457	4.82048744001101	5.01626712550248	5.10981109915172	4.7716990428322	0.918876691253442	0.0267730930988751	0.194783206310326
Merged-chr10-67026543-2	chr10	67026043	67027043	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	intron (NR_110511, intron 2 of 6)	21468.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	7.41416667261012	7.60441964117294	7.27841615999271	7.30493958720729	7.59740408208145	7.22740049561452	-0.0728850470483661	0.77270418835695	0.943848608021176
Merged-chr17-47009655-2	chr17	47009155	47010155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	877.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	7.34086312439507	7.27539384174697	7.0931949009262	7.0037843272815	7.35446006956778	7.28481867563504	-0.0308980055369258	0.901785505084397	0.977356766938531
Merged-chr2-118533493-2	chr2	118532993	118533993	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	11094.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.69980682076431	2.66284776971856	2.90454827328236	3.02601317246161	2.73575887982107	2.97740460637221	0.813364883828746	0.26662280615323	0.664166899200562
Merged-chr4-149504925-4	chr4	149504415	149505415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13326.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	5.16366571958162	5.12698904674911	5.1797767306501	5.22951255492108	5.12918383646218	5.45429518751253	0.226944518249796	0.525074359453723	0.848874487604023
Merged-chr9-92250223-2	chr9	92249723	92250723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011636)	promoter-TSS (NM_011636)	29.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	5.85829539540788	6.18142877397191	5.68864150117574	5.17505962330855	5.06631685719092	4.87291672658525	-1.69494990802315	3.38228248248229e-06	0.000157400984788807
Merged-chr13-60679967-1	chr13	60679467	60680467	+	699.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	77756.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.97815348334733	4.1532877289791	4.6421142587293	4.54246549860205	4.09478545650431	4.47983650024996	0.270304895731455	0.601390450520675	0.881938496212464
Merged-chr9-106199231-4	chr9	106198705	106199705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	28.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	6.53115849198043	6.4509290114772	6.59117828303055	6.51914012665384	6.4985116103205	6.7291577056511	0.0914676387317573	0.729243481355395	0.930601789377265
Merged-chr9-23597947-4	chr9	23597421	23598421	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374845.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	4.39560496214276	4.16519833263263	4.52497713747983	4.2905791550955	4.35363045238558	4.47048012825753	0.0206080894842619	0.96382440908172	0.991198880618857
Merged-chr7-116328038-4	chr7	116327534	116328534	+	967.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63D|DNA|hAT-Blackjack	6156.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	3.91583469191087	4.06929053758268	4.15753313576889	3.92899888221465	4.16009852332062	4.18022361091128	0.139704632619968	0.77637145597483	0.94480820353868
Merged-chr3-27236996-4	chr3	27236474	27237474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	MTC|LTR|ERVL-MaLR	53970.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.91684942421397	7.08306527745545	6.82312649525529	6.88167373103392	7.48876734125707	6.97040860919592	0.310322423848784	0.280786787621518	0.678861780114228
Merged-chr14-55788329-4	chr14	55787854	55788854	+	966.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019955, exon 2 of 10)	exon (NM_019955, exon 2 of 10)	503.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	6.84244647360636	6.86235750396199	6.66206876684187	6.74450353652492	7.04018357935859	6.48752202139653	-0.00754263306261052	0.978643897021848	0.995160277495735
Merged-chr10-88390409-6	chr10	88389907	88390907	+	899.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	10995.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	5.18516746584425	5.19941348256789	4.89218881331187	5.52963525092645	5.40765281506632	5.14970682306469	0.539292630350198	0.145187931374338	0.508278212537777
Merged-chr8-70758293-2	chr8	70757793	70758793	+	611.924988	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183170)	TTS (NM_183170)	2628.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	2.69462892417007	2.78776750497911	3.01881984023475	2.90341843813581	2.54732574534874	3.03456796842848	0.019240882090141	0.980150184471149	0.995483481682754
Merged-chr2-27350515-4	chr2	27349999	27350999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER1C|Other|Other	77109.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.94243671824526	6.52420277540108	6.60022309722255	6.3751602692209	6.4734644335603	6.53920925957223	-0.390050389356107	0.16316763424702	0.536867626448843
Merged-chr3-94582704-4	chr3	94582204	94583204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	12.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	8.0708016849478	7.94436138537107	7.95391894599295	8.01039308757501	7.90759632563532	7.82639387711893	-0.104092921303533	0.626297359017599	0.892873937904836
Merged-chr15-99500401-3	chr15	99499908	99500908	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038658, intron 11 of 11)	intron (NM_001038658, intron 11 of 11)	-25678.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	2.4592102895684	2.28337994181456	2.37961119584424	2.66715881864776	2.28281859998241	2.58552490014191	0.877744573235083	0.301369827254113	1
Merged-chr12-76552542-4	chr12	76552043	76553043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-4618.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	7.3154012502757	7.38818205237908	7.17379985427459	7.23704481920344	7.22673422496554	7.10431775715148	-0.159191931271858	0.498319272057985	0.833856267944725
Merged-chr11-106463234-4	chr11	106462731	106463731	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	RSINE1|SINE|B4	24565.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	5.7059758048506	5.50031757037495	5.60363353186802	6.27493722161306	6.34778150027754	6.02964920083234	1.1017324341084	0.000319244855416998	0.00732994644854789
Merged-chr2-84455385-4	chr2	84454901	84455901	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	18773.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	2.30528585965974	2.23689681430794	2.44672160785515	2.3735939443715	2.16832484878144	2.26204516594685	-0.402789045293131	0.638385279029398	1
Merged-chr8-13155529-4	chr8	13154982	13155982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3679.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	7.82790906206545	7.98894084437422	7.68762853403985	7.98281533426759	8.42833912470452	7.77157767508564	0.363538927295865	0.170264725972312	0.54761653274725
Merged-chr13-51850420-4	chr13	51849889	51850889	+	820.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3714.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.76985908292354	3.3073728466252	3.54515554152827	3.3259712283558	3.41451870573333	3.61547390263317	-0.374615906296225	0.540828118330302	0.856546234535532
Merged-chr2-83726354-2	chr2	83725854	83726854	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1957.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.29281102598332	5.60588237376338	5.57809189244031	5.92374726385632	6.14271452501134	5.87774036576865	0.901827291178352	0.0053641621303471	0.064277246909839
Merged-chr14-75182650-2	chr14	75182150	75183150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46225.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.90322606728559	5.9132329778332	5.88119149804712	6.08181794846569	6.13163586434224	5.94277435964085	0.279985197135057	0.33679270735599	0.726853782743541
Merged-chr7-129994930-4	chr7	129994446	129995446	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	32781.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	4.10211107411532	4.08533038034533	4.17591346074594	3.907721921804	3.96782229461662	4.32818803332636	-0.139701347808384	0.778275280045004	0.945439632982223
Merged-chr11-29864480-4	chr11	29863962	29864962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	Lx7|LINE|L1	-38794.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.96891143184802	3.65588111897835	4.30527159306672	4.14137989681537	3.88943278206014	4.24764281988686	0.292469510721458	0.593038923615373	0.878398361724896
Merged-chr11-61793581-4	chr11	61793073	61794073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-31485.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	6.58985803371534	6.71888988111665	6.37549815117242	6.44487862662774	6.76062110074677	6.7003328580915	0.105488002344515	0.703704167891313	0.922194481398248
Merged-chr6-54818212-2	chr6	54817712	54818712	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	1296.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	6.29766612055312	6.16583460946211	6.05642720297804	6.28668728221907	6.41133497322788	6.30981448608669	0.26092577313288	0.350461615184637	0.738466367557457
Merged-chr10-121585320-3	chr10	121584835	121585835	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	1459.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.16030219917645	5.59475710669904	5.64388045082458	5.8476494168631	6.05128700886383	5.91677101655748	0.192993591154316	0.570813141483209	0.869266484779943
Merged-chr7-122979313-1	chr7	122978813	122979813	+	559.0	f0_balb.idr	3' UTR (NM_175023, exon 3 of 3)	3' UTR (NM_175023, exon 3 of 3)	8749.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	3.36690397104234	3.30930765922893	3.50439430932697	3.28390990711845	3.56766056816781	3.23694149335598	-0.0418777098729245	0.946272631542357	0.98796006280508
Merged-chr1-66814683-5	chr1	66814140	66815140	+	782.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2955.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	6.71806067655869	6.94019086299048	6.74501593676615	6.95023932690229	7.28395937409927	7.03611491208435	0.45294978021092	0.0808650382592346	0.376278833658114
Merged-chr1-36258733-2	chr1	36258245	36259245	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-14443.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	2.46425928411239	2.43068356524471	2.63828903711716	2.66485461931198	2.39128417516228	2.94577033561294	0.954173743744814	0.247728459459928	0.644740222537352
Merged-chr2-163643573-3	chr2	163643071	163644071	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	PB1D7|SINE|Alu	-1279.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	6.59612954590276	6.64938717843501	6.43773678538407	6.65194154836462	6.81016173125577	6.78450623377769	0.284798723548251	0.271846631955119	0.669225282595312
Merged-chr3-27204725-2	chr3	27204225	27205225	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	21721.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.63247485310658	3.72621096281338	4.10296098224108	3.45421627730087	4.13004497846462	3.79644698166274	-0.00457186685015978	0.994026377591789	0.99889519013548
Merged-chr7-128064362-2	chr7	128063862	128064862	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 1 of 29)	ID_B1|SINE|B4	1722.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	4.23222789669917	4.34648749746881	4.27563938334776	4.28421602203871	4.15054510050333	4.55050454579158	0.107964497410709	0.816055555323763	0.956613614084416
Merged-chr15-58145859-3	chr15	58145383	58146383	+	904.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	PB1D9|SINE|Alu	4517.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	4.19353188689747	4.04344314352586	4.00597278455986	4.66605407616382	4.67344618437594	4.58893073020069	1.4600106972462	0.00129280398757455	0.0220162984441471
Merged-chr19-21946667-4	chr19	21946175	21947175	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168335.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.68142895674791	4.13240332782437	3.93005790857872	4.21415554192018	4.24570734347495	3.89582790345096	0.591243485605347	0.267250410027367	0.664581053738824
Merged-chr4-58912181-4	chr4	58911683	58912683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355697)	promoter-TSS (NM_001355697)	-253.0	NM_001355696	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	7.84069646102044	8.06806386522984	7.9808799057758	7.67754944693926	7.39326389104863	7.47248239262842	-0.645246130872108	0.00509368821488441	0.0619371049224173
Merged-chr11-51595490-2	chr11	51594990	51595990	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10733.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	5.51074458876305	5.38321290102884	5.76332073498995	5.62302179095262	5.76965984347138	5.7246727511002	0.295959323392159	0.366819399393918	0.751897609642077
Merged-chr17-32275541-3	chr17	32275053	32276053	+	833.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	8570.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	3.54945574954506	3.8829509734588	3.71515730626101	3.92483890603266	3.69300534250382	3.56464894626038	0.0449430563307507	0.936588377358509	0.986037792257163
Merged-chr11-51857307-4	chr11	51856829	51857829	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357588, exon 1 of 13)	exon (NM_001357588, exon 1 of 13)	152.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	7.98031904195555	8.26980782797839	8.19029985441555	8.20258593402159	8.08869077830023	8.00244780894569	-0.0704392879840812	0.748976174275868	0.93711275444937
Merged-chr5-16434784-4	chr5	16434291	16435291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-118704.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	2.60290282922043	2.55941322834816	2.68985748140173	2.40683464285308	2.3876162006369	2.82115035041328	-0.389652180996107	0.634173973771267	1
Merged-chr5-92531383-2	chr5	92530883	92531883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25726.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	3.28329038646117	3.20002937831373	3.39425695074344	3.34818499693518	3.23405844725973	3.35570560217244	0.0818614904060866	0.8931906749661	0.975210713351106
Merged-chr19-11065401-4	chr19	11064914	11065914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-14848.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.28382203682435	4.99887076944794	5.34307386606451	5.34509063277781	5.29107983882043	5.43521676952045	0.289190318963578	0.416157758174758	0.78703200622012
Merged-chr14-77448213-2	chr14	77447714	77448714	+	937.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_001253759, intron 5 of 19)	intron (NM_001253759, intron 5 of 19)	58654.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.68589707387393	2.83221597603259	2.69698404707502	2.75348397766663	2.89249656362387	3.01244302301196	0.734814681125016	0.313368283531008	0.707942154711635
Merged-chr15-10981796-4	chr15	10981286	10982286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008537)	promoter-TSS (NM_008537)	30.0	NM_008537	17117.0	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding	6.60780487290715	6.82708221874373	7.0477664870645	6.8905516941145	6.39702249684391	6.60072083660235	-0.29831281061815	0.307733477005041	0.703816371678414
Merged-chr19-45658849-3	chr19	45658362	45659362	+	931.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	1331.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.14476246264732	5.44910937087937	5.0363173988708	5.22527533683483	5.31381187917315	5.06532237633717	-0.0389131707611209	0.916863426162345	0.981431795618389
Merged-chr7-73531740-4	chr7	73531221	73532221	+	957.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B4A|SINE|B4	10025.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	6.21366352627116	6.51427835304791	6.4582539674289	6.22674023013915	6.52480633924122	6.42722745358337	0.0032248270049679	0.990965294960648	0.998113069044251
Merged-chr11-5109474-2	chr11	5108974	5109974	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9309.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	3.1411802712221	3.12118006183293	3.16994152394532	3.25697210061069	3.25208609701783	3.46175277879968	0.742856017775091	0.23495733471963	0.631024470284135
Merged-chr1-165471692-2	chr1	165471192	165472192	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027430, intron 1 of 4)	PB1D9|SINE|Alu	10484.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	3.46373033935473	4.05742483881905	3.94374261424817	3.91920194064483	3.93687187384907	4.05947059314129	0.373973451349623	0.508355406852275	0.839818423824339
Merged-chr7-122209302-4	chr7	122208800	122209800	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10196.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	8.14892055893739	8.01893371791403	7.62427712409601	7.84134941359401	8.16785574202934	7.5906234380037	-0.0834289528886346	0.759158609389595	0.940311236380535
Merged-chr16-90044270-4	chr16	90043768	90044768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69569.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	6.61886926615894	7.02932224981255	6.41922122662177	6.44350476178096	6.82102484836021	6.05608058872246	-0.364127251493356	0.286596756680146	0.6838474208565
Merged-chr6-52714346-4	chr6	52713821	52714821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355596, exon 1 of 18)	5' UTR (NM_001355596, exon 1 of 18)	156.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	8.43848380273157	8.87390300614456	8.47468396832292	8.50467245580309	8.68587455190891	8.76719149896912	0.0561439621305899	0.809947303201447	0.954862887748354
Merged-chr18-42261444-2	chr18	42260944	42261944	+	711.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	627.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	5.74135047710548	5.96739579638756	6.06396989722151	6.08847621014843	6.35952998163602	5.91487806296531	0.382046948924535	0.224336535669799	0.619090360474606
Merged-chr12-105823664-4	chr12	105823165	105824165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347440, exon 16 of 21)	exon (NM_001347440, exon 16 of 21)	38968.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.70161824999423	4.58917456985494	4.66076289525003	4.65723261087037	4.62390747213366	4.60549577695727	-0.0496750289284259	0.90256533824317	0.97755491916092
Merged-chr7-67460998-2	chr7	67460498	67461498	+	634.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88140.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.94991569222097	6.42013804977419	6.51835560955406	5.93074393860322	6.23985729074673	6.47738627731658	-0.13982981688503	0.672070390880248	0.910719060610024
Merged-chr8-27175225-4	chr8	27174734	27175734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-588.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	6.1175832493286	6.223648628246	6.3974807759662	6.21432476709126	6.02512437316235	6.03156459890699	-0.254400316754551	0.379350771492943	0.761777656974245
Merged-chr10-127588515-2	chr10	127588015	127589015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 14 of 89)	exon (NM_008512, exon 14 of 89)	32633.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.81828869194358	5.74834651349224	6.11167836515653	5.90740279424882	5.8119840546579	6.0015566441776	0.0218491879343864	0.943942111141589	0.987495247303971
Merged-chr11-68407435-4	chr11	68406967	68407967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20641.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	5.05892877095376	5.3567011755703	4.83034001470711	5.11488629149699	4.69587387163003	4.44750121833287	-0.690227239010294	0.124635165726048	0.472306664538883
Merged-chr12-111909895-2	chr12	111909395	111910395	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1840.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	3.37239340235864	3.10780256852666	3.2375379048414	3.0414576410394	3.34723375631757	2.9406196076991	-0.473621794359862	0.497574735749365	0.833756672867911
Merged-chr6-86669416-4	chr6	86668903	86669903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010751)	promoter-TSS (NM_010751)	-244.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	7.07874514837985	6.87459846815305	6.93734114945026	7.01573006752974	7.02346465649844	6.73811158441267	-0.040894070790916	0.872235624197362	0.970261003150518
Merged-chr14-46872804-2	chr14	46872316	46873316	+	597.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10149.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.83167703295052	3.90916818064536	4.02423280264961	4.7698009738303	4.17640307531945	4.69329968275736	1.77198562640557	0.000502110457128682	0.0105291348076521
Merged-chr6-15792959-4	chr6	15792456	15793456	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	72295.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.27270417508405	4.50670751471051	4.25737771091876	4.71886540215325	4.64839822293358	4.55294783767547	0.712304768771814	0.102658965444928	0.427236732425048
Merged-chr1-183978794-4	chr1	183978261	183979261	+	984.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	55237.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	6.46957068113222	5.99890471851179	6.14985969205745	6.97731831693628	7.04830324598489	6.51929579547475	1.04106713105792	0.000726722950434133	0.0140658672388284
Merged-chr3-137879497-4	chr3	137878988	137879988	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	RSINE1|SINE|B4	11813.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	6.33781843528057	6.07519324767497	5.86632678072801	6.05297303314974	6.10462479786229	6.1818179030798	-0.0123152679879631	0.967673145510173	0.992581088872982
Merged-chr14-73382936-4	chr14	73382414	73383414	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	2375.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.96557412233571	8.28014318274685	7.6903134412968	8.35561248879554	8.43224894902542	7.70813322492625	0.287387176682226	0.324518626929144	0.717544999689449
Merged-chr7-81203723-4	chr7	81203184	81204184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	-10120.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.38951499672289	6.03873096051658	5.95589903278738	5.99366839238772	6.15074181493262	6.29790645399043	-0.00244836765519564	0.993664034977684	0.998753346328072
Merged-chr11-4660596-2	chr11	4660096	4661096	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22803.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	4.88963043339597	4.91238011352324	4.87249974775706	4.73763000602175	5.08487831345126	5.04428002158307	0.163332096271653	0.673708332140171	0.911635961678937
Merged-chr8-109687502-4	chr8	109687025	109688025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	MLTR31A_MM|LTR|ERVK	5769.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.17827086163538	6.25961763583897	6.20884960617542	6.32949032363783	6.3516945703006	6.47840767623455	0.276380702942639	0.309690384518714	0.705335236082367
Merged-chr9-109923997-4	chr9	109923514	109924514	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7760.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	4.62478826739535	4.47544907748619	4.48598581950359	5.07242571530492	5.02987793894502	4.50944738531313	0.863668697765566	0.046300093641762	0.272206471542693
Merged-chr10-94304542-4	chr10	94304049	94305049	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5846.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	3.73521755850873	3.98792084374309	3.63055745694906	3.21609349679226	3.37437478122999	3.29678329502965	-1.85648011183756	0.0028595905996164	0.0405707612255788
Merged-chr11-44545388-4	chr11	44544887	44545887	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	26010.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.90674274230787	5.88215322728098	6.00369765102637	6.13386124753676	6.11776070924368	6.17264002710501	0.366982435680532	0.199067342260012	0.587480505511726
Merged-chr1-74381642-4	chr1	74381122	74382122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 8 of 14)	intron (NM_013612, intron 8 of 14)	6419.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	6.04137678819448	6.24812149871767	6.33382662271	6.29312471220637	6.35172021689945	6.35568829002033	0.210226674362943	0.452687977508801	0.809456767794566
Merged-chr2-59200533-2	chr2	59200033	59201033	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	39683.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.96837749973725	5.1374871990732	5.25667927928904	5.44473120242442	5.67246767302505	5.28859879332688	0.739011060905507	0.0397010239153721	0.247765726319508
Merged-chr10-78482082-4	chr10	78481583	78482583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-17135.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	7.47117258795982	7.6100727450017	7.33008236626885	7.05950911706531	7.10342227376288	7.01469662973662	-0.623657526864664	0.00846561278748217	0.0896876379960296
Merged-chr1-191599435-4	chr1	191598930	191599930	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178632, intron 7 of 19)	intron (NM_178632, intron 7 of 19)	23794.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	4.92765277438526	5.00889848765145	5.07542262206995	5.06834491806171	5.09544414729064	5.0005337001372	0.123879959248152	0.734945187276171	0.932617455907478
Merged-chr12-85393689-3	chr12	85393185	85394185	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18968.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.26426042625573	7.29758437301994	7.29006397273885	6.8682681753473	7.08235337645756	7.09773188473443	-0.397029910484199	0.0956403222344042	0.412335394241042
Merged-chr18-26863704-4	chr18	26863190	26864190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1109533.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.8608554972856	6.15801251213223	5.87219434183076	6.66370308465622	6.958728508254	6.28947332359226	1.15104668379175	0.000307382177025352	0.0071125295289003
Merged-chr13-102694809-2	chr13	102694309	102695309	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	1251.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	7.67529864579702	7.50846601852344	7.35841429658807	7.94011295228158	8.33255620417004	7.82863681098371	0.766803848360504	0.00258007238129606	0.0375806504070677
Merged-chr1-191331630-2	chr1	191331130	191332130	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	PB1D10|SINE|Alu	5665.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	2.74460126381345	2.56481349272017	2.87668491339245	3.0744897956719	2.65262943319436	2.88991010182971	0.764549784477278	0.317298386771011	0.711216102754224
Merged-chr4-120857199-4	chr4	120856681	120857681	+	867.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	2382.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	4.52549023980824	4.52768095611696	4.27139200195835	4.80070396279186	4.65182279031725	4.77168129233259	0.680674199214209	0.11010853468818	0.443375481723486
Merged-chr11-106146503-4	chr11	106146005	106147005	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 8 of 15)	intron (NM_011947, intron 8 of 15)	13422.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.37039466326624	3.43760885942335	3.7352872074846	3.44865724426601	3.63867439434213	4.02931409543744	0.700407692002221	0.248139716952402	0.645285794548721
Merged-chr1-75211606-1	chr1	75211106	75212106	+	550.0	f1_c57bl6.idr	promoter-TSS (NM_029010)	promoter-TSS (NM_029010)	777.0	NM_011494	20872.0	Mm.1155	NM_011494	ENSMUSG00000026201	Stk16	EDPK|Krct|MPSK|PKL12|TSF-1	serine/threonine kinase 16	protein-coding	5.01139013664133	5.05122816635978	4.97335199586531	5.09166237144144	5.13902830773274	4.92715834546198	0.104253749202188	0.777110473706016	0.945018349303776
Merged-chr6-131388467-4	chr6	131388016	131389016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139117)	promoter-TSS (NM_139117)	-66.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	5.08129691687825	4.68522753527071	4.80944228031794	4.70052227415323	3.9720317778232	4.22387410625655	-1.29439193382368	0.00977807299298617	0.0989535319480711
Merged-chr1-136683942-4	chr1	136683450	136684450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	321.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	7.06110419640963	7.15712774732942	7.1515794315043	6.80255614940577	7.02549260623241	7.07267622834809	-0.231095729161266	0.345209968011736	0.733666487940844
Merged-chr12-80230200-4	chr12	80229719	80230719	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	30152.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.04501553899298	6.07812711766415	6.4080630937157	6.12921074987973	6.01177013112994	6.24539575490069	-0.087407059288452	0.769506561012157	0.943125565788486
Merged-chr3-135477090-4	chr3	135476581	135477581	+	941.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8530.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	3.73415024020223	3.81478740451957	3.73262869159263	3.41118388637143	3.51304992602616	3.85078230951986	-0.566876899069645	0.319266164331037	0.71327503587815
Merged-chr6-129625654-1	chr6	129625154	129626154	+	672.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1790.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	5.00330256937298	5.09163167999787	5.05524113583342	5.36988638337453	4.97269095858093	5.18759505088065	0.273136830795579	0.46413581803308	0.816188315062566
Merged-chr19-29500547-4	chr19	29500049	29501049	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21438.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.62192016529727	5.5916902257676	5.46414825170839	5.90119518209456	5.82064655358672	5.36690006656535	0.301442848376032	0.377726555864303	0.760134398363074
Merged-chr9-96437246-2	chr9	96436746	96437746	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41429.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.73380540443122	4.97706461578481	4.34205068123497	4.52066519245058	4.50131415891533	4.20941770405625	-0.715642569410578	0.130234576082531	0.48248257376114
Merged-chr7-67952277-2	chr7	67951777	67952777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	20.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	6.33809290870318	6.13194259259299	6.24646796977927	5.82671747492877	5.34727526859384	5.25945917609253	-1.30274905821036	0.000138169234245376	0.00371823597771321
Merged-chr5-65326846-4	chr5	65326331	65327331	+	685.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	8808.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	6.04628235450222	6.105830990853	5.6095270219291	6.60863007246912	6.76813412045875	5.96247295878866	0.918668217339997	0.00988047550212623	0.0996164552987906
Merged-chr10-127322908-5	chr10	127322424	127323424	+	774.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-783.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	6.41510596035037	6.53159144278684	6.5678786127066	6.73959496885007	7.05346368978644	6.93317772526073	0.652822063194597	0.0126228456660793	0.118379489319461
Merged-chr19-32895834-1	chr19	32895334	32896334	+	727.5	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	138257.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.1378633328711	3.18703592762185	3.06723608123516	3.07571863215827	2.91485000925158	3.25413245584912	-0.23315890362892	0.726423761981	0.929825991245655
Merged-chr16-50431766-4	chr16	50431274	50432274	+	992.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	CpG	615.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	7.67355645647318	7.573114214984	7.4755039320483	7.61167827928904	7.29290083265434	7.42784449907756	-0.192055249934607	0.41605981212507	0.786967899054416
Merged-chr6-122649699-1	chr6	122649199	122650199	+	842.0	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	23275.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	4.98017378170703	4.38833228622167	4.92040885795265	4.55718675204335	4.81309274322259	5.26456214319562	0.260095777186792	0.580278625890615	0.87276455172875
Merged-chr7-83742238-2	chr7	83741738	83742738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6699.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.73573984911063	3.53633853422685	3.93976307281051	4.68951980043076	4.63693359870888	4.63843540588077	2.72384388291165	1.48130618693204e-07	1.0094719508783e-05
Merged-chr11-115481616-2	chr11	115481116	115482116	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	5949.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	3.35056054906143	3.09519482276705	3.76038274329545	3.45486423638887	3.13567593714724	3.87335120830691	0.328388921678436	0.640045345196421	0.89826778327701
Merged-chr6-122608428-2	chr6	122607928	122608928	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	1659.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	2.37117607247573	2.36716991047744	2.25441909091405	2.48482939268743	2.26452752708427	2.52705783416961	0.586510784354614	0.487374326044735	1
Merged-chr15-65787139-4	chr15	65786655	65787655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356582, exon 1 of 23)	5' UTR (NM_001356582, exon 1 of 23)	135.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	8.16205811716986	8.44454256227388	7.78135510877351	7.91689777238706	7.87003035963254	7.75731251189757	-0.446050006483454	0.0808892447584234	0.376327179804351
Merged-chr13-102847780-1	chr13	102847280	102848280	+	736.0	f0_balb.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	87525.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.77375932955835	4.05238270910406	3.8220037157615	4.26029983614637	4.21040139370552	3.94569117990374	0.770793078125081	0.134358016605772	0.490077109965232
Merged-chr2-90577765-4	chr2	90577254	90578254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B4A|SINE|B4	2893.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.50887761378755	7.3142884450038	7.30828933639525	7.37943579764844	7.55028357391417	7.48351838717204	0.134406543028309	0.56192654089839	0.865601232581785
Merged-chr1-64193880-2	chr1	64193380	64194380	+	743.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72491.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.64964292261628	5.48561450137196	5.49989016506427	5.64435914428121	5.7186984947235	5.82764774945418	0.331941675877174	0.296994175791342	0.693586784083001
Merged-chr4-149780775-4	chr4	149780281	149781281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-6514.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.51400737029935	7.51067787090927	7.17743760255521	7.31435575517436	7.56705522167979	7.25974396799077	-0.0339857653996938	0.892237710612912	0.975035687905648
Merged-chr8-45344473-4	chr8	45343984	45344984	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153535, exon 10 of 14)	exon (NM_153535, exon 10 of 14)	-11288.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	2.46552033813858	2.32964729658468	2.2462615162519	2.58811228529805	2.48789837865769	2.58970856205127	1.24718272626793	0.140997109793523	1
Merged-chr1-58724284-4	chr1	58723806	58724806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6246.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.7775041652737	7.79606007995464	7.494059662184	7.50464379808901	7.87000109782301	7.48814992322748	-0.0873321600552231	0.726378802889798	0.929811353796814
Merged-chr5-34695716-4	chr5	34695214	34696214	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019497, intron 5 of 15)	intron (NM_019497, intron 5 of 15)	35335.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	4.94560705750201	4.76681610082792	4.8835828866079	4.49073861068572	4.24950505987488	4.87829794428162	-0.746095673713658	0.0933883637853609	0.407088157154892
Merged-chr16-30597307-6	chr16	30596783	30597783	+	985.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.86957676205539	4.88444536163663	4.41200606152502	5.56659311951787	5.51638944929926	4.68578157367292	1.20088163474014	0.0117460907381853	0.112522302342036
Merged-chr9-107569055-4	chr9	107568558	107569558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010489)	promoter-TSS (NM_010489)	-105.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	5.99520599616608	5.87033724853611	6.25654215314802	6.15341558053972	5.96561892679532	6.07197384606889	0.0403971078290616	0.893703247200151	0.975265071347118
Merged-chr15-66768825-4	chr15	66768328	66769328	+	871.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	63001.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	2.78731666250134	2.86444417277657	3.08577958822599	2.91928747747902	2.72488741890712	2.74019858498678	-0.577740860321273	0.426797803482507	0.793904265858508
Merged-chr19-17350631-3	chr19	17350114	17351114	+	831.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	6053.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.8935649699584	3.37937655968193	3.84948420144653	3.41812891927606	3.10063423967853	3.77669193705119	-0.934607030812995	0.165245169102817	0.54001097346129
Merged-chr9-55277793-3	chr9	55277284	55278284	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	B1F|SINE|Alu	5841.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	2.95137631663628	3.03674585670537	3.0481180959139	2.8079064047782	2.79094115195687	3.00421686700182	-0.713401513058408	0.304332107794146	0.700869191500083
Merged-chr15-73088946-2	chr15	73088446	73089446	+	735.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	3.5641064447272	3.61618988877419	3.63035321892515	3.485349809237	3.35242859836217	3.59620409447533	-0.469183974781277	0.411079658146336	0.783840094880781
Merged-chr2-90491024-3	chr2	90490594	90491594	+	769.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(A)n|Simple_repeat|Simple_repeat	-11920.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.6345638296807	6.33147542755154	6.67600970551732	6.80558755209166	7.0632698420088	6.60126298383694	0.467537216230696	0.100270329486517	0.422231456270955
Merged-chr9-95698292-2	chr9	95697792	95698792	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52066.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	4.26326324888216	3.89645902875552	4.34958835587402	4.44375561496124	4.2582281757903	4.49867651218706	0.593605003639608	0.219189529625163	0.613227215079062
Merged-chr10-41665697-4	chr10	41665175	41666175	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 10 of 47)	L1MB2|LINE|L1	50788.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	3.98516167112238	3.91169342599361	4.00974932795289	4.09282382254638	4.0890614110779	4.26048716922523	0.518238554857537	0.283517503337304	0.681376161050487
Merged-chr7-27507075-4	chr7	27506577	27507577	+	898.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 4 of 5)	intron (NM_019412, intron 4 of 5)	7753.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	3.58362312568695	3.46746495292549	3.57163179032588	3.62788729060226	3.2943089287259	3.64186894575751	-0.060516230829159	0.918047430826822	0.981747877135909
Merged-chr10-43641357-4	chr10	43640873	43641873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47946.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	3.7042163796317	3.40326066982408	3.56693348149085	3.67507350471853	3.38663222698313	3.83917464533073	0.260140259215856	0.661119204107917	0.906296858799492
Merged-chr5-67758130-2	chr5	67757633	67758633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 14 of 36)	intron (NM_001038999, intron 14 of 36)	89298.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.10318847941407	3.05316512042408	3.73052610940873	3.02856920422562	3.07920108873908	3.41860775152125	-0.573596494152788	0.422025933486053	0.790917225016498
Merged-chr8-22896327-2	chr8	22895827	22896827	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36788.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.07919974982073	4.01877809792779	3.93879847103009	3.92664671854169	3.82679067368105	3.95843244847028	-0.356958586991725	0.473828499377352	0.821131043651886
Merged-chr13-55527824-3	chr13	55527278	55528278	+	755.950012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013739, intron 1 of 4)	intron (NM_013739, intron 1 of 4)	760.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	4.36753927940758	4.1979729138855	4.52377349580317	4.47464602960412	4.35485715237801	4.6283463078674	0.31104185941432	0.487905467519728	0.828743097992968
Merged-chr11-4833615-2	chr11	4833115	4834115	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-480.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	5.18767599615635	5.00575202053271	5.01330439551769	5.25984105041367	5.41066590540054	5.51894650900423	0.651267057498032	0.0672970020389986	0.339148648227904
Merged-chr5-125158330-1	chr5	125157830	125158830	+	658.0	f0_balb.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	20884.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.02049457830149	2.66231932618954	3.04630556993422	2.68722907582236	2.40911583246787	2.94849215707219	-1.12822085242288	0.183222419665093	0.566231458237241
Merged-chr13-108043159-3	chr13	108042643	108043643	+	857.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	5.19832977858965	4.75752797630582	5.11560869384605	5.6282688116401	5.62031110322529	5.80534334088865	1.27809966187607	0.000444811138478787	0.0095811144733479
Merged-chr16-88478231-4	chr16	88477719	88478719	+	679.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28759.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	2.89924483255981	2.82280535410077	2.74937893882959	2.8917599102381	2.86946972283642	3.00554614929535	0.454875545333593	0.517405607642763	0.844537090247943
Merged-chr7-43645353-2	chr7	43644853	43645853	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	MTD|LTR|ERVL-MaLR	10614.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	2.95115591690965	3.05830780189041	3.18448242173628	3.0345191676357	3.27970486037165	3.14190915806461	0.428093712935142	0.517673866779452	0.844716414341769
Merged-chr9-123924842-4	chr9	123924340	123925340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	43852.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	8.91389081896726	8.55302521245801	8.75611083433021	8.68876760574953	8.65310796286625	8.55317845376047	-0.15907952779968	0.457012845285162	0.811993709825292
Merged-chr7-128237282-4	chr7	128236776	128237776	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146205)	promoter-TSS (NM_146205)	-81.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	7.5966088499315	7.82448474611608	7.77251381913159	7.5571480969783	7.89205108878063	7.69907651751734	-0.00878609696720529	0.970101509403376	0.993347985887136
Merged-chr10-127746573-3	chr10	127746123	127747123	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5175.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	4.34236766604252	3.97337248219027	4.40946926403708	4.99396391631992	4.94397008827881	4.84342605976187	1.68039601915821	0.000160070065350269	0.00418708267766902
Merged-chr4-149728238-2	chr4	149727738	149728738	+	844.1666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_177672, exon 5 of 6)	exon (NM_177672, exon 5 of 6)	9532.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	2.27497958388601	2.4749925775323	2.44920480649232	2.18339051391835	2.17665514615742	2.26768644446313	-1.39330282061757	0.113404948708489	1
Merged-chr9-99195256-4	chr9	99194742	99195742	+	668.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	41997.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	4.56832026712587	4.67151038852533	4.75683033019703	4.53365547933277	4.40396713308726	5.08719683854972	0.0745259098098537	0.869964546800436	0.96995859587526
Merged-chr9-118806089-2	chr9	118805609	118806609	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	L2a|LINE|L2	94417.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.37543910932389	3.16970745179494	3.59815413748225	3.44447823520824	3.43486960982215	3.56600870228735	0.360453459671117	0.554227759482897	0.862694242200182
Merged-chr3-123267977-4	chr3	123267492	123268492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 1 of 22)	CpG	496.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	7.93932197328986	7.82952147799543	7.48257785180477	7.50629927077241	7.72971801137653	7.23911255523908	-0.368138296509679	0.163365655713399	0.537179588247402
Merged-chr8-71535917-3	chr8	71535521	71536521	+	799.550293	f1_balb.idr|f1_c57bl6.idr	intron (NM_198095, intron 2 of 4)	intron (NM_198095, intron 2 of 4)	1416.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	3.30615614624161	3.18815440505376	3.46889634694943	4.01035230907291	3.84732824381898	3.90966966352397	2.23157061614034	0.000179171613159302	0.00457506798583216
Merged-chr16-17619435-4	chr16	17618932	17619932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029945)	promoter-TSS (NM_029945)	78.0	NM_001164609	77626.0	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik	sphingomyelin phosphodiesterase 4	protein-coding	5.08427948033362	5.16591523897325	4.84487087533713	4.97524798774844	5.00673443711426	4.56694812974944	-0.365074373930961	0.372115562036554	0.756098549142576
Merged-chr16-33785505-4	chr16	33784994	33785994	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8543.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	2.87850941977229	3.22013496132759	3.0312835985782	3.53084272097912	3.36516885055626	3.2899567915095	1.44729808320494	0.0336464588586271	0.224151685244887
Merged-chr4-121214705-2	chr4	121214205	121215205	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001346660, intron 1 of 7)	CpG	379.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	7.87858914316029	8.07756021318917	7.45022587976375	7.60871213896455	7.54945290405452	7.51783476844606	-0.401131595307732	0.117851056529837	0.458445568571046
Merged-chr17-8312741-2	chr17	8312162	8313162	+	667.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	intron (NM_134114, intron 1 of 7)	-1544.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	5.58624850399822	5.84430005210045	5.6900706306701	5.73264051609804	5.66466833247104	5.58661085762753	-0.0887126960991312	0.780088597886491	0.945949149660645
Merged-chr13-64398277-4	chr13	64397787	64398787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27767.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.01682880015418	4.44816906214039	4.2199974226357	3.86588262407047	3.73879500984001	3.90616904209571	-1.22456819025723	0.0174567377922188	0.147510941222194
Merged-chr1-151917914-4	chr1	151917440	151918440	+	888.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 4 of 5)	intron (NM_197990, intron 4 of 5)	162566.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	4.76363256790477	4.72202588640399	4.51935432591108	4.54690256904905	4.304348680429	4.41013535888325	-0.63872895058319	0.137536892256998	0.495697567068926
Merged-chr7-25129020-4	chr7	25128500	25129500	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	B1_Mus2|SINE|Alu	3460.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	7.26392725446489	6.88498551971898	7.12908124627641	7.53638865114062	7.31542482123034	7.1868320620454	0.38267173325448	0.138271879522834	0.496960021384664
Merged-chr2-59194848-3	chr2	59194315	59195315	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	33965.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.62630575801964	4.67409155298777	4.47280855811292	4.64818955537682	4.49627171662033	4.30918773968053	-0.249429646783384	0.565110758789274	0.866552670637515
Merged-chr15-80258856-1	chr15	80258356	80259356	+	1000.0	f1_balb.idr	Intergenic	Intergenic	3672.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	3.42784997366129	3.19325317822522	3.52059159047525	3.54381084732361	3.45753992697838	3.6422133456074	0.611565898363456	0.305645571212142	0.701770328074501
Merged-chr1-131364610-4	chr1	131364113	131365113	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-85050.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.02881860308434	4.62306994759058	4.91695384003787	4.52333037412274	4.4405080502233	4.68697626226423	-0.752525598255471	0.0757409923811638	0.362365253797831
Merged-chr2-117358053-4	chr2	117357560	117358560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15183.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.8694101919406	4.63798232118175	4.32978720323555	5.06806886664259	4.90338043151218	4.76381770229655	0.628423308563234	0.148929392724105	0.514967759530116
Merged-chr19-60791696-2	chr19	60791196	60792196	+	936.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1003.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	6.65324696729313	7.26842282281235	6.87858999600961	6.8731905982748	6.92192012551664	6.80220005627028	-0.147711779518209	0.603364040522175	0.882544198306255
Merged-chr2-160667491-4	chr2	160666978	160667978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	MLT1F|LTR|ERVL-MaLR	21581.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.28613924945859	5.54033584541317	5.33279983506914	5.31169128628935	5.39371459505526	5.39629276844377	-0.0554610903964062	0.870894080486306	0.970222087171093
Merged-chr7-13038833-4	chr7	13038343	13039343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168469)	promoter-TSS (NM_001168469)	-568.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	7.14752442807621	7.33075827189708	7.296717887957	7.08141434113656	7.20986498350688	7.3208899030161	-0.0825629320400095	0.729179792541237	0.930601789377265
Merged-chr13-46737683-3	chr13	46737221	46738221	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9872.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	4.16396168388437	4.23850973973716	4.34464935755702	4.02460986947722	4.02695505358584	4.14931158278049	-0.520622426038017	0.269741132835038	0.66686579973798
Merged-chr11-116581018-4	chr11	116580574	116581574	+	896.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173755, exon 1 of 18)	exon (NM_173755, exon 1 of 18)	373.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	4.53511869225166	4.39120098702414	4.12818203969827	4.25028759032789	3.88440334895859	3.76200279854195	-1.06722689531161	0.0427685561750516	0.259284956081144
Merged-chr3-90222187-1	chr3	90221687	90222687	+	548.0	f1_c57bl6.idr	intron (NM_026677, intron 1 of 7)	intron (NM_026677, intron 1 of 7)	1403.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	2.28757082148685	2.03291457152339	2.16400054169636	2.35632546325473	2.3216217320012	2.50195902967569	1.57894566740858	0.0856023809745478	1
Merged-chr12-117478220-4	chr12	117477788	117478788	+	810.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-38191.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.62409032656692	4.10114204856873	4.25323835542822	4.38103319388637	4.5389710672548	4.58210898323508	0.383476958845044	0.417120994219803	0.787792972496192
Merged-chr9-116138862-5	chr9	116138278	116139278	+	798.546692	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	36585.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.32000236947201	6.42528759389279	6.22137872627661	6.04515677684241	6.08320394962295	6.0411608777093	-0.45826026772916	0.101771647617627	0.425709594558994
Merged-chr7-140881822-4	chr7	140881294	140882294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	75.0	NM_001127351	64384.0	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	5.59775297341354	5.56789699642805	5.71064126053332	5.4870732751819	5.60850290899872	5.46954488681462	-0.17391432841205	0.588767990896757	0.876650937479947
Merged-chr8-110847093-4	chr8	110846622	110847622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	98.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	7.60764198548031	8.01124694532067	7.77567522462841	7.95330296803821	8.07181430902989	7.76255089193075	0.184643612944691	0.443467630027319	0.803800173379074
Merged-chr2-151973043-3	chr2	151972552	151973552	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	intron (NM_146127, intron 1 of 1)	342.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	5.16248195536482	4.76521945186549	4.67089166706494	5.00016574694599	4.59876005992386	4.51702577199547	-0.372520909939657	0.401072246631751	0.777158973264623
Merged-chr11-11770125-2	chr11	11769625	11770625	+	552.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001301868, exon 8 of 8)	3' UTR (NM_001301868, exon 8 of 8)	38837.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	3.11811940779964	3.42883014318891	3.20739646954779	3.15129534758253	2.78812135591531	3.54575857185643	-0.231347850867774	0.756636911358271	0.939652679558287
Merged-chr5-38560787-4	chr5	38560295	38561295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	800.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	7.50539578675731	7.91010009853082	7.81299122009055	7.70408504478011	7.97385867759596	8.0428016253609	0.229289794381603	0.353510918213554	0.740736914917923
Merged-chr12-80644244-4	chr12	80643722	80644722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347409)	promoter-TSS (NM_001347409)	7.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	7.24368564622007	7.3180221048795	7.30515590139268	7.31470317124066	7.30444344429284	7.23549238795297	-0.00197048115433523	0.993080876562051	0.998649733841428
Merged-chr19-5953541-4	chr19	5953054	5954054	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 6 of 17)	intron (NM_001164057, intron 6 of 17)	10652.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	5.08988156500606	4.35680410822808	4.86019146217252	4.89739984717224	4.81059155637996	5.03042158701173	0.233684094557217	0.601058815455927	0.88185957216964
Merged-chr6-17655319-3	chr6	17654798	17655798	+	854.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18288.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.90742595773565	4.77463004596535	4.95757893579017	4.56302755311705	4.78457051968859	4.32166409924304	-0.676758894163043	0.118456568605694	0.459921210483695
Merged-chr19-4282494-2	chr19	4281994	4282994	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026720, intron 1 of 14)	intron (NM_026720, intron 1 of 14)	643.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	2.63743717389413	2.59416622003656	2.72580795320622	2.54832440753304	2.42417561140994	2.79849042663227	-0.329204060607295	0.675273636662173	1
Merged-chr7-3630616-4	chr7	3630148	3631148	+	780.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290381)	promoter-TSS (NM_001290381)	663.0	NM_027328	68988.0	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	5.53246940343274	5.53253733623814	5.69481542575661	5.65657935729944	5.68257769195593	5.4470064790555	0.0486591228559951	0.880664546447172	0.972570649423004
Merged-chr17-70979757-4	chr17	70979236	70980236	+	805.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	10780.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.01370412575839	3.87200199059456	3.91349427896204	4.03285129480892	3.82408062979579	3.881784351653	-0.0649644607522118	0.898044038701776	0.976241437783956
Merged-chr19-41372564-4	chr19	41372056	41373056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	12514.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.30603543735918	6.2509641352506	6.0755424465486	6.31608822968606	6.48937523974491	6.34800662416507	0.279894288676863	0.315058593606798	0.709425363484276
Merged-chr12-12225841-4	chr12	12225335	12226335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36304.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.70283570331004	6.289471529097	6.11266507015917	6.71841822237715	6.79398042730402	6.66394218340482	0.516955424817882	0.0812573451810898	0.377154899019943
Merged-chr17-87285096-2	chr17	87284596	87285596	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	2210.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.07632482934669	2.63413042226982	2.86217365958513	2.62257076193402	2.39325999997456	2.68804241418528	-1.70861231456436	0.0408459404766783	0.252004450806929
Merged-chr12-73889764-4	chr12	73889278	73890278	+	889.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.33184876435521	4.16491247185743	4.51522471452167	4.3363534409062	4.12454545810812	4.28971536892287	-0.236385722250307	0.611864763567103	0.886398022997223
Merged-chr7-19627820-2	chr7	19627320	19628320	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009046, intron 2 of 10)	RMER17C|LTR|ERVK	1618.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	5.75790169196639	5.67755355832556	5.75223748327321	5.74298954443334	5.68277105282456	5.62720726918941	-0.0744822929364322	0.809254358086762	0.954721853010197
Merged-chr16-85174536-1	chr16	85174036	85175036	+	579.0	f1_balb.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-829.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.65982532152302	2.61564523748196	2.77123086830327	2.4402836572019	2.64011737152163	2.53406054271068	-0.77559101562623	0.324438045765569	1
Merged-chr6-90604788-4	chr6	90604282	90605282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-98.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	5.45207770550384	5.69380889697888	5.93465938645318	5.85409327718594	5.83387572725335	5.70229119836023	0.190959904849693	0.560011627805574	0.865168019835518
Merged-chr2-34609689-4	chr2	34609201	34610201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	145531.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	6.27921572735208	6.52509579112048	6.29445227558491	6.09926712060896	6.52181274366885	6.430774364814	-0.0142493240586552	0.961339892753603	0.99051531523293
Merged-chr1-134196015-2	chr1	134195515	134196515	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	2567.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	6.66548025762144	6.82477111388808	6.77202315636547	6.88619069254887	7.00597766353685	6.7199959756944	0.200508033494747	0.432722148665684	0.797472325349157
Merged-chr3-90117881-3	chr3	90117382	90118382	+	726.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 3 of 39)	RSINE1|SINE|B4	13750.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	2.53409360028362	2.7176046537103	2.76214597488756	2.58726346473539	2.68484640385109	2.71338776605148	-0.0550397823287911	0.941876948719723	1
Merged-chr9-58272326-3	chr9	58271755	58272755	+	840.857117	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	19091.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.22423374446675	6.16108236959619	6.21795023575867	7.17782878191159	7.39356546774806	6.98320905269552	1.57847881031838	2.96954181437252e-09	3.01696746386213e-07
Merged-chr2-131160987-2	chr2	131160487	131161487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-906.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	6.64159797494484	6.99237363929866	6.4829549928428	6.4796876057106	6.7269686164632	6.44799400344879	-0.265628025636829	0.360699097414607	0.746890565839007
Merged-chr2-22784384-2	chr2	22783884	22784884	+	666.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	10057.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.27549162921436	4.17217848024043	4.18068909809635	4.55593378007173	4.30208560619388	4.34256716560205	0.511442098189609	0.260998640214275	0.658521360261207
Merged-chr6-113660636-4	chr6	113660156	113661156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	22189.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	8.52579558904204	8.27065323068846	8.13561680337761	8.28779754121027	8.51094758351774	7.9990946989926	-0.0483427201411063	0.845224650222596	0.963760417350313
Merged-chr4-151044800-4	chr4	151044295	151045295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289878)	promoter-TSS (NM_001289878)	-130.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	7.39124913247211	7.5732382054693	7.41020091027547	7.54764355256792	7.51396310285275	7.36916527161962	0.0285518572242172	0.900864946589098	0.977010420288384
Merged-chr5-123662241-4	chr5	123661742	123662742	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	22119.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	7.16872131243722	6.94953245473742	6.48115584094716	6.84962516157295	7.01398483708743	6.68723754299843	-0.0700442839755521	0.8134077535392	0.955940138311315
Merged-chr1-152518867-2	chr1	152518367	152519367	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346119, exon 18 of 18)	3' UTR (NM_001346119, exon 18 of 18)	106350.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.26992971373214	2.26651894090489	2.47075862955971	2.13753144021154	2.09889383318154	2.29349096416847	-1.14487329535329	0.197595077336674	1
Merged-chr19-45020091-2	chr19	45019591	45020591	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	1956.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	3.51512075193344	3.55581260033144	3.15367068906023	3.39655449048244	3.2345356130772	3.34982703900884	-0.392756106550069	0.534781470047141	0.853140391880105
Merged-chr16-30008189-2	chr16	30007689	30008689	+	760.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	-478.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	4.78819035251404	4.86410629447938	5.12823340708375	5.14241654966583	4.99412772525861	5.12711334001007	0.348280457288285	0.359045871931629	0.745307683821397
Merged-chr2-163699662-4	chr2	163699158	163700158	+	758.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	5621.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.20739756830548	4.1632347261276	4.10601469327838	4.03901308784185	4.16316652123312	4.07833094412828	-0.182124273449018	0.700246448654961	0.920919335036368
Merged-chr1-155028882-4	chr1	155028379	155029379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54385.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.64643498734735	4.12824475497565	4.40781114006712	4.25335971319012	3.89937276154392	4.51517753601324	-0.45957897571358	0.374022508726983	0.757718602868082
Merged-chr12-16877704-4	chr12	16877202	16878202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17276.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.38391951784747	7.54530870878159	7.02552068583104	7.24516939047447	7.4774876773107	7.5749420313521	0.13537574886511	0.607684109627006	0.884675594273116
Merged-chr19-46303300-2	chr19	46302800	46303800	+	886.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152247)	TTS (NR_152247)	-1437.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	3.17114002380799	2.95109944832903	3.15535727924945	2.75812315889602	2.9924074944217	2.99624858531448	-0.804373006067978	0.252958760983034	0.650358193791754
Merged-chr16-12091059-4	chr16	12090579	12091579	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	Tigger9b|DNA|TcMar-Tigger	106966.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	4.43584626681356	4.49651456869276	4.45139538723303	4.49518480846442	4.54933739184885	4.60107949025762	0.211890321097207	0.61466832814843	0.887554399107584
Merged-chr10-62501126-4	chr10	62500625	62501625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	6632.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.06593970341229	6.92785799979093	6.80816096360515	7.03660391112187	7.38913195950435	6.94200591771491	0.311053674363642	0.243685166179789	0.64086208327192
Merged-chr10-13984987-2	chr10	13984487	13985487	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	18608.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.35425421956064	6.03935844082257	6.01553837047216	5.87823680545295	5.90453383400631	5.88473987116974	-0.45320098030989	0.132812634068447	0.487669562823071
Merged-chr7-16193949-2	chr7	16193443	16194443	+	633.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	18548.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	2.8876376459542	2.88568653176723	3.14764441081857	3.43630818264935	3.15645895152228	3.27754119111312	1.43460364284992	0.0342291736509905	0.226402311697267
Merged-chr10-94464070-3	chr10	94463545	94464545	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-50812.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.73172799463296	6.54606036715177	6.29604221550371	5.91766050814109	6.01630656885924	5.84723087721907	-1.01901722488553	0.000575400407335678	0.0117367296429425
Merged-chr7-31114200-2	chr7	31113700	31114700	+	614.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	1126.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	2.98196666855629	2.73449752709563	2.6529246269608	2.80136178657074	2.53731932811265	2.85449575417172	-0.341333555333183	0.660002622630749	0.905810817177861
Merged-chr12-69374607-3	chr12	69374111	69375111	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	2461.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	4.46587259043281	4.49771472055915	4.2588646565035	4.29258563656677	4.5415245035646	4.46289034124015	0.0523430027003667	0.906514446239333	0.978774463669401
Merged-chr12-79838313-3	chr12	79837748	79838748	+	834.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86485.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.49139407369685	3.50876320598383	3.33809185900109	3.04085692396983	3.18547476885532	3.23659074995594	-1.21836759810992	0.0548957715499434	0.301045762810762
Merged-chr7-19877044-6	chr7	19876578	19877578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	10887.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	6.23678800295061	6.41403260845267	5.976275895906	6.48269225999424	6.46187465430953	6.17938883857972	0.257342220382464	0.388422416615204	0.768276420122608
Merged-chr7-102031242-2	chr7	102030742	102031742	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 5 of 8)	intron (NM_029211, intron 5 of 8)	-13087.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	5.93617095404458	6.44073771686603	6.3038518243154	6.6542829766479	7.04423304438762	6.77951695181969	0.955503752522467	0.00149226028498027	0.0246413958707359
Merged-chr2-163932368-3	chr2	163931860	163932860	+	995.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13677.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	4.52854386319796	4.38231457972345	3.97088607983293	3.67102371479302	3.33271306529734	3.71524121243648	-2.45519079023638	3.39693080888164e-05	0.00114387623935825
Merged-chr10-51529046-4	chr10	51528558	51529558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	38160.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	7.56327600214758	8.05759230813563	7.71931070223392	7.94384374817288	8.12590736740368	7.85311954977339	0.259746369112412	0.297248560867092	0.69386498175224
Merged-chr17-43578738-1	chr17	43578238	43579238	+	655.0	f0_balb.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10287.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	4.64993106591777	4.38812624330801	5.02048916269051	4.52741203139104	3.95845060744893	4.5231285730424	-0.856647494204044	0.0911616043704819	0.401789013001698
Merged-chr17-46705081-4	chr17	46704593	46705593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009358)	promoter-TSS (NM_009358)	-67.0	NM_001357684	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	6.3002788361332	6.34624246788247	6.55973091280567	6.40625101341381	6.55965056886938	6.4448609494174	0.126098939226387	0.642938230082296	0.899548231805501
Merged-chr10-68446535-2	chr10	68446035	68447035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95340.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	5.33095181833222	5.65223041465639	5.31986240705968	5.12056669292787	5.37309637659893	5.32032351781817	-0.339474317452595	0.341502230615041	0.730861271883589
Merged-chr11-77606980-4	chr11	77606477	77607477	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	838.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	7.82863922968431	7.72374138081039	7.80250349682401	7.63930905836456	7.73067214333385	7.72297835512305	-0.12466683595186	0.561933239510091	0.865601232581785
Merged-chr9-66347556-4	chr9	66347060	66348060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	6.6866374025178	6.92200488828589	6.70836567463364	6.87675768968564	7.33395260602097	7.08412985459977	0.51709203965402	0.0551865506104952	0.302003453021906
Merged-chr7-104505898-3	chr7	104505412	104506412	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199146, intron 1 of 7)	Lx4A|LINE|L1	1937.0	NM_199146	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	5.2593386874454	5.43355227867547	5.41859946806548	3.92093801457903	3.8600239458926	4.07941279654386	-3.83971449471877	6.16492321280481e-14	1.46197447580087e-11
Merged-chr5-140116186-4	chr5	140115678	140116678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58740.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	7.13657065198941	7.11057488188266	6.93323520207029	6.95070233514291	7.06752947782435	7.07270479919952	-0.0575983759235762	0.811668550245332	0.955304895434479
Merged-chr7-30882299-2	chr7	30881799	30882799	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1957.0	NM_001043317	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	3.66256870038457	3.82081799423749	4.22829743656457	4.4777615802545	4.40067854841526	4.42404120404671	1.4828242104597	0.00381230036751835	0.0501523935146983
Merged-chr1-64189725-4	chr1	64189240	64190240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-68351.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.62095642212731	6.48302583457252	6.34309515889797	6.3789869724968	6.45322464453872	6.28160565792754	-0.186677486418976	0.494570113642024	0.832098209532918
Merged-chr3-36571543-3	chr3	36571045	36572045	+	875.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009828, intron 2 of 8)	CpG	1493.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	3.85569722079875	3.68341334275397	3.81844962630501	4.16141412303638	3.96114619305514	4.13154798325475	0.911843261968627	0.073666341457024	0.356707641057462
Merged-chr19-41317884-3	chr19	41317403	41318403	+	744.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-53899.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.19974945949365	3.47708971481334	3.86833704479905	3.47519943921745	3.06414486905137	3.75494556131749	-0.280158444070499	0.687877664285122	0.917193226920892
Merged-chr6-4618121-4	chr6	4617622	4618622	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145398, intron 5 of 17)	intron (NM_145398, intron 5 of 17)	17056.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	2.76484299238305	2.9945901628914	3.08576926731073	2.92711540913698	2.74326009697934	2.98581856568475	-0.324115847209386	0.650306436178356	0.902576889668442
Merged-chr7-125551673-2	chr7	125551173	125552173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-609.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.80234103782534	6.98452475209565	6.61134034453631	6.67968419113026	7.01645333488247	6.78474157169147	0.0385910404269312	0.887272821043244	0.973836995667151
Merged-chr8-117364995-4	chr8	117364495	117365495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	15825.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.37070374293979	6.36380819748697	6.23293436713032	6.19692023845736	5.87632388589671	5.71256020476466	-0.638737144877124	0.0363595189163363	0.234654684711899
Merged-chr19-6363646-4	chr19	6363115	6364115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-75.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	8.04516270066446	8.06637221919538	7.54649202160757	7.73152911842431	8.06804956919394	7.60324494685385	-0.130338878676671	0.627066612913651	0.892997633492257
Merged-chr7-142393285-4	chr7	142392778	142393778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5408.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.51136338822741	6.95902588759451	7.26432991755711	7.63634618186468	7.63383626098881	7.58441371726198	0.51853684645127	0.0441000341705282	0.264257211814872
Merged-chr16-92089360-2	chr16	92088860	92089860	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080456, intron 1 of 2)	intron (NM_080456, intron 1 of 2)	31024.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	3.47646843530904	3.49428987887316	3.72730142998007	3.10078205853382	3.56801177871003	3.84217367424699	-0.111243806201556	0.867275626261671	0.96931826298411
Merged-chr5-121900734-3	chr5	121900235	121901235	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	51738.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	2.92683142293525	2.81806151356643	2.86919574406496	2.53351937420218	2.57021563722367	2.63182518257874	-1.67760408471013	0.0303005226031623	0.210331683053635
Merged-chr4-75317346-4	chr4	75316845	75317845	+	886.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-39053.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.33527487809158	4.3578464458266	4.73785029633094	4.53459276217038	4.40978800073216	4.76667839818284	0.225017901541547	0.617726518502081	0.888915970314947
Merged-chr6-146634458-4	chr6	146633969	146634969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026281, exon 1 of 12)	5' UTR (NM_026281, exon 1 of 12)	123.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	5.99709557537458	5.86942733539338	5.93074333707823	5.63999757544041	5.5410513845479	5.72109103836042	-0.55140473235326	0.0719611678953964	0.352282453270585
Merged-chr11-114960511-3	chr11	114960012	114961012	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199225)	promoter-TSS (NM_199225)	-95.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	3.90379620496004	3.61520759191651	3.91223693343446	3.73796743541081	3.67478813277055	3.88488260752958	-0.164943861389925	0.759884415913702	0.940572672765463
Merged-chr13-9760219-4	chr13	9759725	9760725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	3585.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.34120156860002	5.13814537017382	4.88177981520692	5.24750918505529	5.54033810165208	5.10355952947639	0.357899461597628	0.355812597508038	0.742593358585589
Merged-chr4-128658958-2	chr4	128658458	128659458	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4256.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.53831818145152	4.62119891615628	4.69912466331324	4.35557359017363	4.53349799344035	4.72682885676391	-0.186136976121938	0.662717010354537	0.906804932599005
Merged-chr16-90934312-2	chr16	90933812	90934812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026502, intron 1 of 6)	CpG	537.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	6.43038643899352	6.54552840939926	5.76753621925773	5.5586589337475	5.68545917943244	5.7477747135942	-1.11047831547198	0.00130627314211939	0.0222065261993485
Merged-chr4-101721948-4	chr4	101721449	101722449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	L2a|LINE|L2	4542.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	5.17977075554966	5.63234890292506	5.39144428849754	5.1794223647559	5.40161816145734	5.45425076335661	-0.13760361424389	0.704320311427004	0.9223772679418
Merged-chr7-101618516-4	chr7	101618036	101619036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-37375.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	6.47302714771789	6.77326478430531	6.72414003758035	7.24965048677612	7.47281987687957	6.41428822110322	0.719449403473164	0.0342647086346186	0.226554940635537
Merged-chr2-165861236-1	chr2	165860736	165861736	+	868.0	f1_balb.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	-3063.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.99284819421952	4.67187307374016	5.03878848339785	5.03426493085478	4.88681534260339	5.16760379788036	0.264785641728208	0.50154638290684	0.835823581592476
Merged-chr14-55682398-2	chr14	55681898	55682898	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-581.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	5.34585372402318	5.68777599067565	5.43832806306145	5.62740649915484	5.83294219571669	5.89918525779833	0.525878700229281	0.11470362252657	0.452186398382538
Merged-chr14-31154328-2	chr14	31153828	31154828	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 25 of 68)	intron (NM_138672, intron 25 of 68)	14313.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	2.00355156795499	1.93443356947303	2.17607293072089	1.83961883152264	1.75769112580558	2.1876211917504	-0.794545433180697	0.442068271751536	1
Merged-chr8-82863304-4	chr8	82862815	82863815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177378)	promoter-TSS (NM_177378)	-41.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.24219843284611	5.93517396495464	6.04076533865629	5.85188792350627	5.57980849461265	5.6232775880136	-0.693086043187105	0.0276567560265462	0.198470319573683
Merged-chr5-66111102-2	chr5	66110602	66111602	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-12923.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.82564745482028	6.03212471985104	5.68635095355795	5.88102118278863	5.81160706049772	5.80233246978407	-0.0597867311783505	0.847155953372463	0.964173182504699
Merged-chr2-156202506-1	chr2	156202006	156203006	+	560.0	f1_balb.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	5859.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	4.7820178584841	4.66561312760848	4.64129536796187	4.15618013412698	4.40692383481087	4.62879993101954	-0.728107479557232	0.0998356213930998	0.421403255966978
Merged-chr16-14361013-4	chr16	14360520	14361520	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-538.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	6.49335986530003	6.90218923914383	6.38780329783199	6.83790927531305	6.97554779492819	6.46792082439131	0.257031471732644	0.398501208088591	0.775273667788888
Merged-chr5-144258040-2	chr5	144257500	144258500	+	999.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	2775.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	4.35906907274122	3.92838458630635	4.45876770200449	4.36741176874932	3.994936195837	4.13369516019408	-0.245844597279684	0.630525512949672	0.894734411238057
Merged-chr19-10979361-4	chr19	10978902	10979902	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-4732.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	4.26762526634971	4.74623312531404	4.9289395925305	4.50081926116707	4.82418548947959	5.05722115056272	0.317546926824677	0.498458630213731	0.833867703468588
Merged-chr17-33844181-1	chr17	33843681	33844681	+	896.0	f1_balb.idr	intron (NM_001305169, intron 1 of 4)	PB1D10|SINE|Alu	755.0	NM_001305169	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	3.14978499208882	3.03543316747786	3.04779583722994	3.16123748074707	2.97598188281794	3.60267196745396	0.778497336718438	0.261257537929227	0.658868800873344
Merged-chr8-80738467-4	chr8	80737997	80738997	+	962.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053124, intron 1 of 23)	CpG	962.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	6.80527771573418	7.12775993888711	6.81537938610763	7.08397470617943	7.06980649373164	7.13490698199369	0.248089374981441	0.327247995800494	0.719396012109034
Merged-chr8-94180169-4	chr8	94179687	94180687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013602, exon 3 of 3)	exon (NM_013602, exon 3 of 3)	1098.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	7.40963302076504	7.45261232000692	7.10305578311728	6.97118821687213	7.2149621928413	6.9396776926347	-0.42319542940178	0.0977335533358305	0.416925964185171
Merged-chr6-145277068-4	chr6	145276571	145277571	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26519.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.52799706985947	7.79408011111228	7.11538950719865	6.76734623553405	7.04137368596258	6.84394222026149	-0.932719935727225	0.000950604256336642	0.0173042832993348
Merged-chr5-125279640-2	chr5	125279140	125280140	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	61454.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.03755439099162	2.92397342932809	3.05888468911691	2.97514023657031	3.03510095618544	3.55272169729834	0.860405474388506	0.219483095285876	0.613724448754633
Merged-chr10-82178572-5	chr10	82178034	82179034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	50521.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	6.66258218484237	6.73207933485581	6.88580702996172	6.91459185999966	6.98266641541975	6.88718007054205	0.270887759639116	0.275976535823002	0.673355880502019
Merged-chr15-83032774-1	chr15	83032274	83033274	+	663.0	f1_balb.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	623.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	6.05163738242097	6.16625587189835	6.4814575666879	6.60903451236706	6.51484741590484	6.62376318463885	0.567377047267242	0.0450894296353988	0.267909258861916
Merged-chr4-101689821-3	chr4	101689324	101690324	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27583.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	3.29714747290699	3.2911795060658	3.67665590738499	3.06481134557547	2.90429637795774	3.45308696384206	-1.11598133705036	0.11088880659012	0.444841551070303
Merged-chr2-120464935-3	chr2	120464422	120465422	+	936.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040608, intron 1 of 4)	ID4_|SINE|ID	1329.0	NM_007601	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	4.27381983922926	4.31975109120793	4.51167885478334	4.23692766917295	3.94879841656369	4.10018590114785	-0.745004352202648	0.117162868397287	0.457157700051652
Merged-chr11-54555027-2	chr11	54554527	54555527	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 4 of 28)	intron (NM_001252494, intron 4 of 28)	32182.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.14277398623526	4.01899384768001	4.10627235037634	4.33283678527566	4.10377769986792	4.47804471991173	0.593924383656472	0.214216608416409	0.607432426267453
Merged-chr1-88094587-4	chr1	88093996	88094996	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	-505.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	7.49314662877059	7.95137828177927	7.78360172771894	7.18156364953941	7.61611518310102	7.61389224589492	-0.392147506266854	0.139465498894539	0.499084106249493
Merged-chr16-38238545-2	chr16	38238045	38239045	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	56279.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	2.78903693736474	2.653058254604	2.81207838652106	2.62697522198215	2.48762619583079	2.57382535088633	-1.08214055578153	0.160013221833062	1
Merged-chr8-120720629-3	chr8	120720147	120721147	+	765.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15711.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.58916276732377	4.26340478092646	4.92384683171458	4.50398067914719	4.65169001510454	4.4714012377809	-0.14684263687758	0.75208784828015	0.938072067270686
Merged-chr5-140765641-4	chr5	140765140	140766140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	41513.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	7.98032222146542	7.99940034802836	8.05912867907877	7.52438412221187	7.93187207836318	7.53902707936149	-0.462094489331549	0.0534154232368526	0.296322155115194
Merged-chr9-21073550-4	chr9	21073049	21074049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039824)	promoter-TSS (NM_001039824)	-35.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	7.16071313538335	7.43484020326522	7.34864809357817	7.1166336612449	7.41876148316718	7.24792577669723	-0.070876140834784	0.773921388384702	0.944238027249587
Merged-chr15-78935076-4	chr15	78934537	78935537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133800, exon 1 of 6)	exon (NM_133800, exon 1 of 6)	104.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	5.37203944498501	5.56038340946152	5.78620053941292	5.67892046991051	5.35170994639757	5.44785461948998	-0.144433142862442	0.677510882987684	0.913010966021872
Merged-chr4-11476327-1	chr4	11475827	11476827	+	553.0	f0_c57.idr	Intergenic	Intergenic	-9631.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	2.69076688932696	2.8820063834398	2.84675257423657	2.92384562646281	3.15318094262955	2.98158931794233	1.06298451369396	0.136169179609074	0.493146752362964
Merged-chr2-4562542-2	chr2	4562042	4563042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	2788.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.35208226193499	5.61172477424731	5.48162727935558	6.05167965524288	6.07937986603327	5.77230113325055	0.898901386293492	0.00524990333319364	0.0633276248982859
Merged-chr10-79909307-4	chr10	79908791	79909791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359629)	promoter-TSS (NM_001359629)	-353.0	NM_001359629	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	7.86782819684249	7.93683443080029	7.84239013097496	7.9869037052395	8.02040906761327	7.84920016762287	0.105001354093467	0.621793198523541	0.8908398051148
Merged-chr8-94373023-1	chr8	94372523	94373523	+	708.0	f0_balb.idr	Intergenic	RLTR33|LTR|ERVK	-13406.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	5.27826784867822	5.04945357589227	4.98644049205266	4.89016174082946	4.87906805054514	5.24997507853813	-0.234240357498369	0.544780118803551	0.857894224757806
Merged-chr2-34977375-4	chr2	34976878	34977878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15606.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	4.80371288212812	4.99516169278827	5.09823422040724	4.44477043711868	4.4861050760857	4.93351937159469	-0.778750424756056	0.0675669185220281	0.340012588834648
Merged-chr13-34162967-4	chr13	34162405	34163405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101430)	promoter-TSS (NM_001101430)	-59.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	7.50407296632375	7.65079509599761	7.39909317594219	7.61895895845281	7.52579159201317	7.28488165460563	-0.0539460716390861	0.821636497689061	0.958023303204974
Merged-chr2-129305519-2	chr2	129305004	129306004	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040371, intron 3 of 4)	intron (NR_040371, intron 3 of 4)	4468.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.84177311360573	6.49003046211137	6.46554237509673	7.05848815807652	7.3080760884485	6.66736809905081	0.6815786805946	0.0235128803928804	0.179772098845061
Merged-chr13-58455019-2	chr13	58454519	58455519	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51676.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.25805495340562	4.35048078781901	3.82333731668259	4.34361762090432	4.20841625202902	4.06137903191809	0.104424995036563	0.839242255566948	0.962725890398731
Merged-chr12-80946163-4	chr12	80945677	80946677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045057)	promoter-TSS (NR_045057)	678.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	8.94135871401136	9.14569813041894	8.66343068785894	8.67394834471974	8.79970863519856	8.7615614809412	-0.261726104445867	0.239392622838055	0.636282788382435
Merged-chr2-125859117-4	chr2	125858621	125859621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009939)	promoter-TSS (NM_009939)	12.0	NM_175154	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	6.79164862148129	6.89032100226452	6.63813633015338	6.79722134151358	6.4760585429544	6.68060617519642	-0.205507407920578	0.441334990857333	0.802556876306087
Merged-chr9-118676637-2	chr9	118676100	118677100	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-35092.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.0027321299233	4.11986719102858	4.02946420924438	3.86403386513767	4.13938869704429	4.36253328619415	0.225732140057242	0.653445976619011	0.903374227660526
Merged-chr12-3776061-3	chr12	3775505	3776505	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-30975.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.50030846201887	3.64538573056542	3.68950536479942	3.52394913012245	3.12363424449321	3.44314543917595	-0.908864358604492	0.140671896974693	0.501135728195839
Merged-chr11-95414951-4	chr11	95414356	95415356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	773.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	8.51622142827691	8.29277857667279	8.35425485881199	8.33143957346859	8.76782389818987	8.3061043764148	0.141344109035729	0.55270721141331	0.861859066495732
Merged-chr15-25830637-4	chr15	25830150	25831150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12648.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	6.50432720142784	6.04108175504478	6.03302767956495	6.09394639021727	5.81615878059455	6.1164264648803	-0.359705838252814	0.262382979303636	0.660368420241499
Merged-chr15-59082145-4	chr15	59081642	59082642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146180)	promoter-TSS (NM_001146180)	-116.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.80917596634115	6.1887206102019	5.63396092274001	5.53553851385476	5.69594543333861	5.2088941460139	-0.725588840296078	0.0466139149947249	0.273163648065432
Merged-chr19-46330193-4	chr19	46329713	46330713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133694, exon 4 of 4)	exon (NM_133694, exon 4 of 4)	2029.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	3.87152633192754	3.63933596558193	4.06613882492373	4.26226422194037	4.03777894140314	4.13460081512575	0.852329772295985	0.0993583917544547	0.420262965692592
Merged-chr3-101006443-3	chr3	101005920	101006920	+	622.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 7 of 8)	MTEa|LTR|ERVL-MaLR	23075.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	3.2900715137537	3.56594996340622	3.67478960753966	3.59360905737168	3.48369804445772	3.59058208683858	0.141425635611753	0.809381720906551	0.954721853010197
Merged-chr12-84846014-2	chr12	84845514	84846514	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	Tigger7|DNA|TcMar-Tigger	-29788.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	4.67673741011459	5.09130051405408	5.00431274895916	4.69269810829774	4.60341868552441	4.70251517074016	-0.620397887942395	0.130072935206462	0.482205782698119
Merged-chr14-93235584-2	chr14	93235071	93236071	+	598.666626	f0_balb.idr|f1_c57bl6.idr	intron (NM_001271800, intron 3 of 3)	intron (NM_001271800, intron 3 of 3)	655098.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.52315879108712	2.59821480626649	2.66443598338757	2.32574550161234	2.21044088997181	2.55439243577672	-1.49697090681467	0.0853657495020437	1
Merged-chr3-88630125-2	chr3	88629625	88630625	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	8731.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.55084071071104	3.57932638851101	4.2273560697802	3.65794236379182	3.41743946169933	4.33114327633788	0.118367744909344	0.859193460590976	0.967239713199238
Merged-chr12-17467007-3	chr12	17466516	17467516	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77857.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.57240760954235	2.62834317919732	2.72911990450631	2.44950454305937	2.57516661766604	2.80141776762854	-0.167648709251403	0.829668545555456	1
Merged-chr3-87908147-2	chr3	87907647	87908647	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	1297.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	4.94143901837176	4.78869641435056	5.27064320300484	4.90962593531389	5.16068741413884	5.49816984660294	0.415865624552109	0.308956108235536	0.704802606494279
Merged-chr5-52189954-5	chr5	52189456	52190456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015537)	promoter-TSS (NR_015537)	590.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	8.41023478285949	8.84516689663276	8.23051848866306	8.41588903608758	8.29809536689091	8.22656468318313	-0.294904650224903	0.235190244915358	0.631443917750293
Merged-chr7-28179987-4	chr7	28179483	28180483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271370)	promoter-TSS (NM_001271370)	-333.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	5.06147405055054	5.15572674292021	5.08392095245907	5.30287221096527	5.1610397199001	5.21565083145726	0.254619177979137	0.47183682943366	0.820356030413222
Merged-chr16-36645885-4	chr16	36645382	36646382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20195.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.96957309683796	3.9996537029264	4.03450453941065	3.7803322702307	4.00988681158058	3.95893931705624	-0.232771016871606	0.642931394752494	0.899548231805501
Merged-chr6-120190324-3	chr6	120189792	120190792	+	634.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-3531.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.42197322482702	3.51174571732385	3.66346026578862	3.25137296549609	3.4088100061835	3.47573234246068	-0.565553244272932	0.341481781587725	0.730861271883589
Merged-chr3-55293571-4	chr3	55293075	55294075	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	51211.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	2.87778089818911	3.10600800524587	3.12497771410871	2.96801173079735	2.96583975213171	2.7691395567076	-0.612179084504368	0.389060459775204	0.768867573000832
Merged-chr8-83767679-2	chr8	83767173	83768173	+	803.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26362.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.58219660210913	4.15691380484189	4.27820407245262	4.13899117368506	3.75337038836247	4.16362161532506	-0.926836511830086	0.0714268131935497	0.350618370922116
Merged-chr9-52289232-2	chr9	52288732	52289732	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121121.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	2.67450508566	2.62945248816886	2.84367584480025	2.45178016120277	2.54937858965322	2.6156598171772	-1.00586895290888	0.197270912920256	1
Merged-chr18-38371231-2	chr18	38370731	38371731	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32238.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.97132823530402	4.94929683995862	4.6849552201192	4.87885998744512	4.49735036628606	4.86894335372589	-0.299358302466515	0.472109485219248	0.820487582506336
Merged-chr7-35122374-2	chr7	35121874	35122874	+	916.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001287523)	TTS (NM_001287523)	3081.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.78303456301641	4.62049628190228	4.62496453433919	4.25087409298554	4.23374359169637	4.61231749200166	-0.79103778333292	0.0736338831992719	0.356610683501834
Merged-chr6-38767953-2	chr6	38767453	38768453	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	69358.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.745527924585	3.98913798076215	3.85977989369507	3.74124105712884	3.59989297970347	4.15689434731306	-0.0811306665751869	0.884468752369627	0.973510728214101
Merged-chr16-17703888-3	chr16	17703382	17704382	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19018.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	6.22956431988418	6.51849587353524	5.95764893249647	6.24116515005643	6.18425119218349	5.72068256833771	-0.312827865707023	0.349638388126052	0.737700915363556
Merged-chr19-5474709-5	chr19	5474258	5475258	+	709.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	23.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	3.89492555049173	3.56589765107181	3.92151256585927	3.54129994064209	3.48919640731967	3.64451979454401	-0.837875917869228	0.138764987098494	0.497691577630065
Merged-chr10-3740384-4	chr10	3739889	3740889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159942)	promoter-TSS (NM_001159942)	12.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	2.08991392546822	1.88526785553974	2.11685002183703	1.73308674547601	1.78720607974894	1.9267340504486	-1.99562814300771	0.0626155724612558	1
Merged-chr2-118923053-1	chr2	118922553	118923553	+	620.0	f0_balb.idr	3' UTR (NM_001045523, exon 7 of 7)	3' UTR (NM_001045523, exon 7 of 7)	-3444.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	3.16286675615498	3.14425592986274	3.70398437591669	3.14060737626032	3.16429180009299	3.58461503094363	-0.191767334608657	0.779680122790172	0.945881582628859
Merged-chr5-115653117-4	chr5	115652603	115653603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151603, exon 1 of 3)	non-coding (NR_151603, exon 1 of 3)	483.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	5.51067055838975	5.65837971158705	5.95621441306457	5.44617289715137	5.59032099411755	5.26554847996899	-0.486406855771431	0.164002919683775	0.538041830266433
Merged-chr1-152625065-5	chr1	152624490	152625490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016846, exon 1 of 18)	exon (NM_016846, exon 1 of 18)	227.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.86330313536921	7.83942541976065	7.72329158813265	7.48090523123958	7.7409074478794	7.55592832911719	-0.303915134422481	0.178500097609878	0.559779750571845
Merged-chr14-25475484-2	chr14	25474984	25475984	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	16299.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.7762116259319	5.71754983442434	5.55089410247319	5.65391455566058	5.26583655171663	5.12057274275872	-0.600715557371304	0.091615495105086	0.402988879356487
Merged-chr3-146445713-4	chr3	146445218	146446218	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4749.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	6.38060182225712	6.25487035777493	6.39472633360434	6.34002059715584	6.254201405747	6.34131428484935	-0.0536076416881092	0.843255333129111	0.963333610101354
Merged-chr9-62341256-4	chr9	62340709	62341709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009672)	promoter-TSS (NM_009672)	-134.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	5.21843011370873	5.18901477895917	5.54629189717449	4.88783374907805	5.08986317005655	5.30361135384288	-0.449341222071114	0.234279592729722	0.630452522567377
Merged-chr13-60603472-4	chr13	60602967	60603967	+	855.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	1256.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.43604556573722	6.63056799768398	6.92134902742919	6.08721101491226	5.91918525818773	6.00399744693655	-1.10222702551472	0.000195836725196979	0.00492599220985195
Merged-chr12-119313181-4	chr12	119312673	119313673	+	940.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74897.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	5.02429891116559	5.54819111358225	5.07528730102515	5.5211026736444	5.69812886348465	5.61525718762671	0.70146679290755	0.0588974160173407	0.31414975589557
Merged-chr5-107961538-3	chr5	107961128	107962128	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	25449.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	6.01591649638405	6.09521449654047	6.40901769813234	5.88906133265039	6.21402465845934	6.30556792804739	-0.0484406998236119	0.876121768067316	0.971185372218754
Merged-chr17-83731720-2	chr17	83731220	83732220	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	MTD|LTR|ERVL-MaLR	25557.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	7.36584644873346	7.54716955075701	7.56440524576106	7.39765545790618	7.69670994460606	7.68511378590593	0.156913687058328	0.507306709505001	0.838954122716727
Merged-chr11-43755626-4	chr11	43755122	43756122	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7649.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	3.77444857908025	3.82369108262179	3.80914226391967	3.91865148201794	3.9387455735626	3.82741461922995	0.307551919716779	0.5472513025919	0.859256588783723
Merged-chr11-85525194-4	chr11	85524685	85525685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172021.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	8.0749235620008	8.06779910461393	7.66274013278004	7.29457948079709	7.69772808688863	6.92426289828341	-0.859140943038271	0.00364970457827386	0.0486518132888515
Merged-chr12-71864044-4	chr12	71863568	71864568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-25475.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.02131678654561	5.2847792141085	4.85359575994622	4.97197046539866	5.0357505147986	4.95845262103431	-0.181514494913635	0.637023379779198	0.897256731014262
Merged-chr1-74997464-4	chr1	74996942	74997942	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029342, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-45770.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	4.5767160309626	4.59550167558785	4.7260681762939	4.78298432616616	4.74009191272939	4.67411244406542	0.252174666907008	0.530541779045561	0.851204116136432
Merged-chr17-44075810-2	chr17	44075310	44076310	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-2992.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	4.13605955361455	4.06146298416313	4.16152239964674	4.97557166009618	5.40026773587525	4.9337696800068	2.49096018927344	3.2498877942147e-08	2.63563999591634e-06
Merged-chr13-73804653-4	chr13	73804169	73805169	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40972.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	6.35353928986672	5.89812491879592	5.70205566510809	5.80119414278356	5.86398507140999	5.6206871059322	-0.444539255114734	0.195131863611178	0.582790097177276
Merged-chr19-46960404-3	chr19	46959917	46960917	+	818.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	ID4_|SINE|ID	1934.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.81944964212847	4.95859341444597	4.63691379968116	4.68324492561828	4.5392600037704	4.74411549816607	-0.394405783114997	0.335232265902376	0.725385451575238
Merged-chr7-80715423-4	chr7	80714918	80715918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 37 of 37)	intron (NM_016721, intron 37 of 37)	-26541.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	4.66710945266752	4.55397840050775	4.99604180842758	4.37543706607214	4.55369717312252	4.895776657071	-0.295411816997984	0.509267229754311	0.84026772146894
Merged-chr2-164454256-2	chr2	164453757	164454757	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6714.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	3.98205667478014	3.62064852998196	3.71257214669323	3.57288437784235	3.69065721686052	3.73050426084794	-0.394808202442131	0.476847156751166	0.822962649471119
Merged-chr16-36999762-4	chr16	36999237	37000237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9270.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	5.31347208690694	5.52602769685528	5.39417093577651	5.43922392333617	5.53796216979858	5.39618743881767	0.0929951633884577	0.781198543711777	0.946170805022375
Merged-chr15-30614589-3	chr15	30614134	30615134	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-424492.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.1543122665008	3.25965908061438	3.31919521110448	2.76156564197471	2.78517769681291	2.8020571936081	-2.34566253387607	0.00171622871095773	0.0274728662141921
Merged-chr5-139826912-4	chr5	139826404	139827404	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356963)	promoter-TSS (NM_001356963)	-10.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	5.42016192685122	5.84155590763091	5.85414980907385	5.42904036965841	5.3046069557772	5.61846548715843	-0.50641889166237	0.146689827375528	0.510979493291873
Merged-chr9-106321585-1	chr9	106321085	106322085	+	541.0	f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	40524.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	2.94157712353282	2.96004004105269	3.08998278093119	3.12516651848882	2.81343387343345	3.42971284729812	0.634467097822762	0.37402384597155	0.757718602868082
Merged-chr2-35495651-4	chr2	35495151	35496151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	-34202.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	7.84363132475866	7.99531395131812	7.7917364016424	7.48445881396808	7.57241517288468	7.55877839168942	-0.498750343756685	0.0235378659978363	0.179844666305181
Merged-chr3-109029734-4	chr3	109029227	109030227	+	715.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.44801369864481	4.20074760126442	3.95604815942365	4.10535573917621	3.96923868186481	4.07811463464261	-0.502032292674807	0.315042549262831	0.709408433618251
Merged-chr13-37824856-2	chr13	37824356	37825356	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.64026431532953	3.93090074094081	4.06989965667378	3.55460743732835	3.71432825077017	4.00417331238794	-0.390726053692392	0.488205447877522	0.828998794069485
Merged-chr19-34464641-4	chr19	34464158	34465158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	10477.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	4.12602645476895	4.29979285627737	4.58697238303354	4.03228275683837	4.227147354919	4.46103555807807	-0.257995461056561	0.597572777209608	0.880433364120803
Merged-chr2-70871018-4	chr2	70870520	70871520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45540.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	4.6986644807284	4.58630079004068	4.65747016442964	4.60042003144255	4.66180995498122	4.60217722045883	-0.0554326749306741	0.891619898662638	0.974874622584437
Merged-chr6-38940353-3	chr6	38939848	38940848	+	746.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21362.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.56453502791748	7.1550591872548	7.22462505056032	7.57814031843569	7.62262221214303	7.37519630112159	0.298033771109057	0.237215249258613	0.633648592261465
Merged-chr4-86657759-2	chr4	86657281	86658281	+	652.0	f0_balb.idr|f1_balb.idr	intron (NM_007408, intron 7 of 7)	intron (NM_007408, intron 7 of 7)	12278.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.88146300186126	4.9282313319448	5.17799508123433	5.07462688149122	5.21377284600199	4.97027636876742	0.227963181576366	0.545788158587001	0.85834429351586
Merged-chr13-63256959-4	chr13	63256445	63257445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	16916.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.43256706453075	5.55403266958058	5.4803151634429	5.47219502979833	5.66107644101341	5.65413967953923	0.204780719444959	0.528218023760228	0.850495873730805
Merged-chr6-17772681-3	chr6	17772179	17773179	+	774.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	23509.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.01791940756227	3.30480870139843	3.08224396297921	3.30875314224802	3.16090329246854	3.3298070383459	0.499030568840458	0.44302927496213	0.80353074331471
Merged-chr18-75901600-4	chr18	75901102	75902102	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81424.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.62457844797892	4.6189471247567	4.43470012505753	5.73430319189428	5.65912589429299	5.14642936060725	2.07427924225469	4.32628118706066e-07	2.58979284181974e-05
Merged-chr17-73360467-1	chr17	73359967	73360967	+	555.0	f0_balb.idr	exon (NM_001033444, exon 5 of 23)	exon (NM_001033444, exon 5 of 23)	38829.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	4.56498002501246	4.69638743260882	4.2796684062045	4.44956406875694	4.54685805136381	4.61433521001791	-0.000769431685867478	0.998606156258829	0.999759614134958
Merged-chr4-155892789-3	chr4	155892260	155893260	+	832.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	885.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	5.29735101040986	5.79508272305296	5.55865414607624	4.97568991584366	4.76148676079621	4.95482775212044	-1.38121794566205	0.000266475224689256	0.00633148786291936
Merged-chr4-155708742-4	chr4	155708234	155709234	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	B2_Mm2|SINE|B2	3919.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	5.41051456806806	5.48498465232783	5.53789983707047	5.42105608050064	5.27692869443629	5.48802267735515	-0.165891213308484	0.618913646598437	0.889524760662882
Merged-chr8-26976050-4	chr8	26975552	26976552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1284.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.8333562814699	6.8616116241574	6.79316900233753	6.6734545631857	6.69601637752398	6.4228160354376	-0.342967573924304	0.184554068845519	0.56829044423897
Merged-chr17-31111689-1	chr17	31111189	31112189	+	1000.0	f1_c57bl6.idr	intron (NM_009593, intron 13 of 14)	intron (NM_009593, intron 13 of 14)	17922.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	2.37880017919676	2.49741450844561	2.58794834392338	2.19022091928668	2.13278096620365	2.5401623854716	-1.28335855070261	0.159917323084571	1
Merged-chr14-31830790-4	chr14	31830292	31831292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024604)	promoter-TSS (NM_001024604)	-377.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	3.19985062678057	3.08858179962335	3.21440830932971	3.00912774024673	2.89341609372188	3.05601683125136	-0.840541119128951	0.205626188621674	0.596170316941535
Merged-chr2-150667190-5	chr2	150666701	150667701	+	628.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040331)	promoter-TSS (NR_040331)	-293.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	3.51235590151625	3.51672846335009	3.38735894660837	3.44558856273345	3.45634516812965	3.28262293536111	-0.282363142985111	0.634140515780101	0.896306748317281
Merged-chr2-120101210-3	chr2	120100712	120101712	+	721.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53363.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.20918643160846	6.22955073010397	6.45336074046749	6.41990991400665	6.56005945070143	6.42227022057833	0.295745379856119	0.280299113995034	0.678136854248135
Merged-chr11-49245262-6	chr11	49244710	49245710	+	839.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010794, exon 2 of 3)	5' UTR (NM_010794, exon 2 of 3)	1019.0	NM_001110148	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	6.0663516585967	6.01069949177174	6.22534170473581	6.06967203144388	6.12022788873505	6.16355116268091	0.034723472356479	0.903152359451472	0.977756599430303
Merged-chr11-46077891-8	chr11	46077434	46078434	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	intron (NM_001291890, intron 3 of 22)	21950.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	5.31699757353589	4.7916676587994	4.41836925655571	5.52730729473836	5.56406066909214	5.46731659692164	1.28515055345744	0.0942488159384343	0.408983336459204
Merged-chr13-75707992-4	chr13	75707451	75708451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138953, intron 1 of 11)	CpG	467.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	7.69000303756087	7.4817604852592	7.35143293447496	7.52986807688422	7.47030675641838	7.3863301132278	-0.0815381187958218	0.729323366774955	0.930601789377265
Merged-chr8-25274605-2	chr8	25274105	25275105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31665.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	2.54755816295739	2.37995679404077	2.26426524313555	2.60552019743422	2.42635261018436	2.60766955764737	0.849847515562423	0.316702276018018	1
Merged-chr17-87142392-1	chr17	87141892	87142892	+	616.0	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	34713.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	4.41961349828704	4.50196627024018	4.26088532199996	4.02764038703228	4.11766410747579	3.98483790258864	-0.975890818375069	0.0393902384019263	0.246492662959046
Merged-chr10-51533805-2	chr10	51533297	51534297	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_LTR|LTR|ERVK	42899.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.58430060456311	3.39274916362062	3.46435790721428	3.44056858957408	3.67574426267892	3.64200051746568	0.39120531104412	0.497729256310294	0.833786477221282
Merged-chr4-128981313-4	chr4	128980798	128981798	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11926.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	6.37001696645051	5.9317976960922	6.28704812070516	6.1599114246605	6.05870108371088	6.16581826442299	-0.136790300888814	0.649848850123638	0.902373685049826
Merged-chr9-53693917-4	chr9	53693412	53694412	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	12320.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	3.83936149804212	3.79380694743851	4.00024996156387	3.82167813322984	3.89094212853142	4.11307468134547	0.205743217976623	0.68900357678934	0.917235946766438
Merged-chr11-121705307-4	chr11	121704777	121705777	+	767.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	2850.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.24593244324391	5.97301134696627	6.05627600506345	6.12172065153265	6.07735744124944	6.13885617313914	0.0199041029927316	0.945234575320384	0.987875414328125
Merged-chr15-81024563-2	chr15	81024063	81025063	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46798.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	3.55331728485926	3.78912196929237	3.87026549775779	3.73440216147557	3.59397053866401	3.84256988248053	-0.0631634064221464	0.908544975545655	0.979266532095756
Merged-chr13-3540066-2	chr13	3539566	3540566	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	1991.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	5.12353222015841	5.50895939038818	5.48963321793762	5.54697315836724	5.3016239884598	5.40672923404874	0.0717450512614394	0.840172721818746	0.962819298477451
Merged-chr16-11065004-2	chr16	11064504	11065504	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1294.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	3.71047033263511	3.69013532235848	3.54452126099224	3.64960031341041	3.72752461358186	3.9710411899242	0.425052355341088	0.439886146326239	0.801456990152239
Merged-chr16-4559932-4	chr16	4559421	4560421	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031182)	promoter-TSS (NM_031182)	-201.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	5.80816515975657	5.98119784324456	6.08837859165394	5.6878894031837	5.69889411022684	5.83283783150771	-0.396199209246899	0.196993945777353	0.584870414852249
Merged-chr16-92416664-3	chr16	92416149	92417149	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-16571.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	8.2916302126906	8.29022107398058	8.41703548287445	7.68493311562493	8.00236064334255	8.00798475916805	-0.599929787683614	0.00718836716783573	0.0796974890474717
Merged-chr1-120510487-2	chr1	120509978	120510978	+	578.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-5454.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.27166643559606	3.32819698024964	3.3359165662807	3.54197499190968	3.32643033168705	3.40768639562431	0.448298727951667	0.453545694089215	0.80983494973791
Merged-chr16-94632110-4	chr16	94631609	94632609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	20690.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.61404840045807	3.54641008896131	3.28602019051497	3.48394962069969	3.50901538415204	3.79353036836461	0.357716184425186	0.551303099685664	0.86113813250694
Merged-chr1-90603415-4	chr1	90602929	90603929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133805)	promoter-TSS (NM_133805)	4.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	7.18621774305101	7.55923492056803	7.1320899785564	7.2468756467713	7.16990141731673	7.07202758763757	-0.219743562559707	0.391514554130453	0.770545981836576
Merged-chr4-40704213-2	chr4	40703713	40704713	+	603.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_001025445	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	4.69828878882905	4.74801234074467	4.61639577531278	4.55183644281954	4.69573117422529	4.87232740735517	0.0333252179271928	0.935066579678018	0.985758101267319
Merged-chr4-21776276-4	chr4	21775764	21776764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-6.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	6.54673432514539	6.91842648443027	6.99520165462615	7.11255239067559	7.0557795661581	6.47857307389103	0.141154135745417	0.643028817255852	0.899578698446903
Merged-chr11-51619623-4	chr11	51619138	51620138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026631)	promoter-TSS (NM_026631)	-135.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	7.57684934383372	7.89347188679568	7.29093453450856	7.48339011178547	7.34142684212284	6.66560876736422	-0.581434889325804	0.0672953906490405	0.339148648227904
Merged-chr6-145212184-4	chr6	145211690	145212690	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163628, intron 1 of 2)	intron (NM_001163628, intron 1 of 2)	1043.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	6.65227471193122	6.69785816077466	6.60296719507488	6.87127061418636	7.07562249205346	6.86832718108174	0.457193580334147	0.0698583677348795	0.346080915842097
Merged-chr18-66437534-4	chr18	66437034	66438034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21070.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.7081863827462	6.68515391223245	6.10221308644307	6.67351615952958	6.98185939627942	6.32441293243194	0.253895653775687	0.443310897219898	0.803766572656034
Merged-chr3-60580945-4	chr3	60580451	60581451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	79772.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.55981335107962	5.80374947220167	5.67407012637641	5.6161159199427	5.77874324464312	5.47931223400458	-0.079668151986854	0.807419150497331	0.954557080558103
Merged-chr18-5688638-4	chr18	5688071	5689071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	MTD|LTR|ERVL-MaLR	95924.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.03072710570411	5.09953702804138	4.9246898821915	4.80634639697138	4.74275201412364	5.09332521497955	-0.324034441111876	0.403017464095923	0.778454829669287
Merged-chr6-37442355-4	chr6	37441843	37442843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-195.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	7.19226267257386	7.54873439442286	7.28418160661299	7.48268226836883	7.59027873316083	7.03323978174602	0.0692126161344984	0.79921712334222	0.952241087526368
Merged-chr16-27296740-3	chr16	27296245	27297245	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10896.0	NM_198112	239790.0	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding	3.34667192218585	3.43608256156844	3.37743398588659	3.38370840677478	3.22155784915948	3.33605586708314	-0.300097030236157	0.617511746052179	0.888810836054056
Merged-chr3-40739175-3	chr3	40738685	40739685	+	867.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6428.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	3.19162883794541	3.211666983683	3.03340122978348	3.10216382235086	3.02023856110407	3.28067261657455	-0.0858934186478872	0.895638731480828	0.975665889379756
Merged-chr10-98877542-2	chr10	98877042	98878042	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37100.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.2961051590431	5.98834058172312	5.6643187004194	6.13198708304065	6.11600975138288	5.99292615811981	0.106831082486135	0.741732483702461	0.934945994271166
Merged-chr9-78538148-4	chr9	78537694	78538694	+	994.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276452, exon 11 of 11)	exon (NM_001276452, exon 11 of 11)	49851.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	7.38178604837817	7.49009311344031	7.18806331893256	7.12650007873262	7.58387287695867	7.11811577576634	-0.0858256045754081	0.748545131051066	0.937061013186316
Merged-chr3-135579363-1	chr3	135578863	135579863	+	881.6666869999999	f0_balb.idr	Intergenic	Intergenic	93752.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	2.74200793773172	2.89964428486613	3.03670649435259	2.64220256302894	2.76017226922195	2.6913843406215	-1.00160908704326	0.179916633472922	0.561407906623225
Merged-chr2-181680220-4	chr2	181679707	181680707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356342)	promoter-TSS (NM_001356342)	-90.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	5.05330737434732	5.13603834035063	5.5311031851624	5.47573615798591	5.39705010500777	5.33526333051411	0.324558319483044	0.370250005682412	0.75468690157258
Merged-chr17-71255315-2	chr17	71254815	71255815	+	727.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 6 of 7)	intron (NM_001357337, intron 6 of 7)	50661.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.42280347741896	3.16664463020314	3.68767364514066	3.3084544300248	2.98861334792322	3.2360252680097	-1.02821534403336	0.125170748120022	0.473461569668643
Merged-chr3-52198653-4	chr3	52198157	52199157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69680.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.9848691163842	7.08043282705856	6.89917055863925	6.77386027965947	7.36358543560796	6.85333241056707	0.0677391487488471	0.811870041622031	0.955333185419231
Merged-chr10-125386844-3	chr10	125386338	125387338	+	771.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57875.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.9672516463568	4.7052780964867	5.1468117085504	4.73728371145497	4.48645442186293	4.91729686460411	-0.521376094667323	0.21787337381921	0.611901565759233
Merged-chr2-129363259-2	chr2	129362765	129363765	+	580.0	f0_c57.idr|f1_balb.idr	Intergenic	L1ME4b|LINE|L1	-6637.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	3.32842999092864	3.61107806390938	3.86791934126257	3.30173996977266	3.59016902182155	3.89038735708873	-0.0154732517768755	0.980527077618531	0.995512982807197
Merged-chr7-81862553-4	chr7	81862050	81863050	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-137.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.50551082906434	6.58254985255991	6.76045814284733	6.0394544426623	6.32269193528265	6.68588986365681	-0.400315349504641	0.187632682695896	0.572811133759911
Merged-chr11-61518145-3	chr11	61517643	61518643	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010148, exon 10 of 10)	3' UTR (NM_010148, exon 10 of 10)	12999.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	2.58954090959527	2.61494841020381	2.74687785400177	2.66493011728669	2.50741301050134	2.75956290509551	-0.0341622849285759	0.964131128511878	1
Merged-chr18-23843537-4	chr18	23843044	23844044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	39574.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.85071456606485	6.83726213459403	6.80975060014681	7.07906588205296	7.36052525920694	7.01293061499221	0.511270194632823	0.0426238259034228	0.258891842517983
Merged-chr7-5047493-4	chr7	5047005	5048005	+	720.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-4027.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	2.02673985813471	1.85674901111366	2.08546905039679	1.81945652675279	1.7259668724788	1.82303303108997	-1.89537706413808	0.0717913867426766	1
Merged-chr4-145233419-2	chr4	145232919	145233919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	13451.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.23764455154141	7.3909061181896	7.56563790137636	7.55519722854843	7.69298581893912	7.83662550061191	0.434978876807906	0.0679687769064826	0.341165933249875
Merged-chr13-54687279-4	chr13	54686773	54687773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	CpG	535.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	6.91150141050589	7.37104677519369	7.28761072524889	7.17838413659539	7.03936222933536	7.2550688683635	-0.0725888585161462	0.781398102136138	0.946174647340264
Merged-chr13-97295528-4	chr13	97295002	97296002	+	952.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54397.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	3.13588867491542	2.73015596758266	3.05918656179812	2.75723855726695	2.58683394963779	3.01741429273601	-0.942937304412716	0.223771094838596	0.618518262184522
Merged-chr3-8738407-2	chr3	8737907	8738907	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71369.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.56679638551276	3.4781505226355	3.50108413487438	3.50151653438315	3.60480922833297	3.40250911787117	-0.0153489369737288	0.978713091335494	0.995160277495735
Merged-chr15-73597963-2	chr15	73597463	73598463	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-1437.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.25863385882597	4.19754681118486	4.48958598816629	4.40560393904243	4.22515820879953	4.30290206761907	-0.00280896421765492	0.995096853483752	0.998961028701257
Merged-chr10-120980345-4	chr10	120979875	120980875	+	925.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	5.78155272007396	5.68189654114141	5.36114490318005	5.02419656775631	4.95868941424055	5.08760584438265	-1.22127938009923	0.000607927549449553	0.0122607981796892
Merged-chr19-46522643-4	chr19	46522164	46523164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	21016.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.29020108320058	7.72657730368246	7.89409309122517	8.11061573856428	8.21352480117492	7.64844582001138	0.0348798092850869	0.899558420339685	0.976656120908248
Merged-chr1-180417336-4	chr1	180416835	180417835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	66169.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	4.87648105997071	4.48432018767329	4.17189127279997	4.4392581783279	4.08852011694507	4.13996074504649	-0.822290002986675	0.103306064757335	0.42844351208263
Merged-chr5-121596772-4	chr5	121596280	121597280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-2956.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	7.26775074756414	7.51347875344758	7.37964240279515	7.17645001914139	7.53998036415244	7.20763234139211	-0.0953852119538325	0.704529174805236	0.922447539412348
Merged-chr17-57275657-4	chr17	57275160	57276160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3440.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.08507322848543	6.93140268236144	6.84822711606458	6.96295293647303	7.00848059482848	6.76721290266732	-0.0598624982933892	0.812360638340098	0.955553570095744
Merged-chr12-3825203-3	chr12	3824686	3825686	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	UCON10|Unknown|Unknown	18026.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.46756456174761	4.50166828606412	4.37621029108404	5.1362089349087	4.80127676719863	4.79005989610745	1.09328832420664	0.00931815144105324	0.0957925309003161
Merged-chr17-15826064-3	chr17	15825593	15826593	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178615, exon 1 of 3)	exon (NM_178615, exon 1 of 3)	493.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	6.67394240564339	6.84410396741796	6.48315192627388	6.76319780101005	6.7310567167163	6.82480093464563	0.133738114406727	0.610954736189087	0.885849400663435
Merged-chr1-20829894-2	chr1	20829394	20830394	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9582.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	4.34246957685798	4.65142908850289	4.89265778444268	4.58854209081346	4.65023267991788	4.85350181908229	0.137986843536103	0.753307692550055	0.938549578325581
Merged-chr11-60776837-4	chr11	60776331	60777331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	534.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	8.52906559914664	8.94954793656226	8.50450813695782	8.57302037758997	9.08498283397948	8.61294421263565	0.141136934032577	0.585185855997687	0.874892547046187
Merged-chr5-3502787-4	chr5	3502264	3503264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41069.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	8.38696579991615	8.4538769721351	8.02106033072488	8.1931104631559	8.57375389173626	7.95899429445421	-0.042161876120773	0.87307310445039	0.970371929331986
Merged-chr6-97443596-2	chr6	97443096	97444096	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	15690.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.20674145528203	6.19366577868874	6.53204235397308	6.24035334961159	6.29140196288448	6.50756473404399	0.0584155416568933	0.839806985629935	0.962784121274377
Merged-chr8-71308149-4	chr8	71307620	71308620	+	813.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	35406.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.25581910840937	6.31961978966367	6.43341707352597	6.18353349047397	6.20724413336861	6.11684342635576	-0.26664654500967	0.334396629807752	0.724916623845021
Merged-chr13-119597798-4	chr13	119597309	119598309	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26010.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.9474658844428	5.24197707284213	5.13469506219699	4.54297501715021	4.54406750440977	5.03641866052601	-0.887296664439848	0.0332948752862158	0.222611489177617
Merged-chr5-110839869-4	chr5	110839357	110840357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016681)	promoter-TSS (NM_016681)	-80.0	NR_153348	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	7.49034607311018	7.83030685896775	7.52300490781048	7.88505506251365	7.76961272483299	7.40907543383415	0.118594382655062	0.643222922671041	0.899683856672863
Merged-chr5-138997690-4	chr5	138997174	138998174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2721.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.44606807365387	5.8329763706481	5.17471589371267	5.94850212835797	5.85942866618889	5.68447626386653	-0.14846567610266	0.826942585053883	0.95928060640973
Merged-chr7-25132526-4	chr7	25132020	25133020	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-60.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	6.16518131427438	6.15451684420436	6.72594499252338	6.51914154893349	6.7451791086851	6.49474830276781	0.376618698926038	0.220900927172547	0.61561513090473
Merged-chr1-120100715-3	chr1	120100219	120101219	+	659.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20200.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	3.02212960934083	2.85711077676543	2.71930318271337	2.92772085234341	2.82926586682289	3.15151321561744	0.458551435365365	0.530003307600409	0.851070276054813
Merged-chr10-80250206-2	chr10	80249706	80250706	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029272, intron 1 of 7)	ID_B1|SINE|B4	754.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	5.51277291649469	5.71507314357524	5.57263040387068	5.57617064346576	6.05440181702419	5.91836207747016	0.480214817242009	0.149082616385524	0.515274779276237
Merged-chr2-35448348-2	chr2	35447848	35448848	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	13101.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	2.91271400002416	3.0306116216112	3.14987138760773	3.02210745789679	2.66416380958913	2.80420441052369	-0.945998611889206	0.197040870043128	0.584870414852249
Merged-chr16-33769653-2	chr16	33769153	33770153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24384.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.33971955654781	6.29499703709139	6.09153292225679	6.77290446178678	6.91821451523694	6.57831218622121	0.830917873079246	0.00269836289647987	0.0388653937840223
Merged-chr1-173424635-1	chr1	173424135	173425135	+	741.0	f1_balb.idr	intron (NM_001013779, intron 1 of 8)	B4A|SINE|B4	4031.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.0133858841486	4.27282657417432	4.19239650723624	4.23682077417634	4.04133859582817	4.34755819744019	0.116087297975051	0.809234256860196	0.954721853010197
Merged-chr4-41348029-4	chr4	41347531	41348531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	-965.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.79763047404859	6.86046545521333	6.80503043118047	7.31315003928042	7.29103177688065	7.30593135309184	0.728038688176703	0.00190380832121825	0.0297487479421461
Merged-chr17-48322545-4	chr17	48322044	48323044	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 5 of 5)	intron (NM_177083, intron 5 of 5)	6382.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	5.90208746924392	6.25356646145574	6.24624451923425	6.31966626354378	6.39238451942145	6.3643386646621	0.366087342771311	0.205417633304309	0.596047563330878
Merged-chr2-90589989-2	chr2	90589489	90590489	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-9342.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.27806510020349	4.02919732176921	3.74983983416315	3.74968986296886	3.85668157675332	3.82190825858188	-0.716690783487603	0.182987630659386	0.566044640020304
Merged-chr6-124741500-1	chr6	124741000	124742000	+	1000.0	f0_c57.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-421.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	7.82507237332595	7.84414522630259	7.62103364935465	7.74158921854108	8.10514526364159	7.49489365776402	0.0651658671150828	0.801527257948306	0.952995299515894
Merged-chr10-96691146-4	chr10	96690669	96691669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74168.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.46192094531248	7.52477468915278	7.13862962576709	7.40601779605668	7.72610095187585	7.29614123189714	0.153285436078292	0.557369439867875	0.864207623582794
Merged-chr17-62642699-4	chr17	62642204	62643204	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	238613.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.32982698045753	4.18581292905939	4.15267055470988	4.01156741743212	4.17156464365442	4.31085562256263	-0.172963048207382	0.714775837286584	0.926044950792719
Merged-chr9-78528086-4	chr9	78527579	78528579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-46355.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.18545723382139	8.37660791769786	7.9378355896488	8.22392885370945	8.36637660101023	7.92916793845856	0.0104394372480149	0.966153202420403	0.992257071390623
Merged-chr8-109704713-4	chr8	109704186	109705186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-860.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	6.39686246197515	7.01008654419882	6.86433445180744	6.50999261692228	6.76676755531553	6.52600714618669	-0.269004496367822	0.369513513398608	0.754199183923683
Merged-chr7-73540667-2	chr7	73540167	73541167	+	908.900024	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	1079.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.64136247515496	7.90575189384417	7.29603968213349	7.63103551004318	7.96703092648343	7.521688422973	0.116423221629592	0.671683869440651	0.910577937637596
Merged-chr8-70698897-4	chr8	70698427	70699427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010592, exon 1 of 1)	5' UTR (NM_010592, exon 1 of 1)	1188.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	8.18209552227226	7.85889999298083	7.89391221128523	7.98043017720463	8.04920403526268	7.76494174517215	-0.0667518350131638	0.774955724356897	0.944517829695789
Merged-chr4-130795673-2	chr4	130795173	130796173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	3136.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.45842912869703	8.69748673799777	8.5771142894041	8.64582895404478	9.09859032726365	8.32934861056817	0.217297982658836	0.409633339449937	0.782996589845341
Merged-chr18-63711413-2	chr18	63710913	63711913	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	2718.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	4.72021323973914	4.75640799202276	4.4593195888205	4.69999575468257	4.47692190343546	4.39004939192513	-0.312932607423389	0.469886618802907	0.819156207361246
Merged-chr6-57527258-2	chr6	57526758	57527758	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	Lx8|LINE|L1	8168.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	3.01089062963483	3.03933136183405	2.90213388859819	2.88824719616529	2.99635463057656	3.03524319438975	-0.070324205963685	0.917427310943397	0.981615488433117
Merged-chr6-88902883-2	chr6	88902383	88903383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	632.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	8.53642516623202	9.11183519699674	8.5669502686857	8.83931965679951	9.11941586228156	8.37977734848429	0.0684229287756046	0.810852950339438	0.955096593239846
Merged-chr3-51476532-2	chr3	51476032	51477032	+	550.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053089)	TTS (NM_053089)	-7434.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	4.31839883182671	4.33565258762382	4.30145226362474	4.287932534055	4.5125691629511	4.73095217155331	0.503100440689451	0.263343447298019	0.66138304194783
Merged-chr13-63702102-4	chr13	63701647	63702647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	32151.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	5.00066653355876	4.86646945544798	4.32247623829869	5.12872923079552	4.80786798129056	4.88523202247334	0.382999934756094	0.396765302989701	0.773744054474158
Merged-chr1-143917784-4	chr1	143917282	143918282	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86367.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	7.55657365604759	7.59850092264249	7.60601866667031	7.72566018810108	7.97129882697931	7.55556718084789	0.267131930113458	0.256079896526802	0.653115451305932
Merged-chr17-34261660-4	chr17	34261110	34262110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.62544746728333	6.51140433908897	6.62759680349383	7.25107746486679	7.62649771176497	7.0648322004308	1.16039995171743	1.98897251172034e-05	0.000726994906337731
Merged-chr5-142441776-3	chr5	142441279	142442279	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	Tigger7|DNA|TcMar-Tigger	-22152.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	4.24807458455388	4.25620568091429	4.56788824029894	3.82611758013457	4.09642068187567	3.9377058298034	-1.10741753746527	0.0282039366624491	0.200872478114274
Merged-chr2-27318441-4	chr2	27317984	27318984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-71181.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	4.92926712148934	4.91857070723961	5.32117758563794	4.77047870697604	4.6581534995688	5.01783011573723	-0.540195381215411	0.183756988106852	0.567117371996399
Merged-chr12-16895510-4	chr12	16894962	16895962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	CpG	484.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.87410083315802	7.69215216618823	7.76035578645172	7.79741404923035	7.51671750204188	7.78310133142311	-0.111984234428962	0.625453167022318	0.892513881101067
Merged-chr14-74848332-4	chr14	74847834	74848834	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	intron (NM_001033439, intron 2 of 19)	99543.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.26173539855473	5.2981361462696	5.41213805190451	5.28046646619491	5.25131045928793	5.63656732098237	0.134089129687105	0.70386588309319	0.922281360858231
Merged-chr5-21327932-2	chr5	21327432	21328432	+	614.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-44741.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.68901245200169	3.67590307219769	3.66730431978236	3.74922289061984	3.84240548225549	4.2067515846062	0.834749919836706	0.124797838689388	0.47258743328547
Merged-chr13-97187886-4	chr13	97187404	97188404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 5 of 13)	intron (NM_010422, intron 5 of 13)	10453.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	6.56516165358902	6.46200039559304	6.38977514330981	6.45098902694734	6.49282762010944	6.59194050210257	0.0499938081368497	0.849841040041048	0.964746847431705
Merged-chr4-41556770-3	chr4	41556267	41557267	+	640.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	12760.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	3.58832513863869	3.4975373041084	3.89940895929743	4.80125220531445	4.72645310227622	4.32559874084596	2.98780706649936	5.74492100054289e-08	4.35755138207085e-06
Merged-chr1-87213374-2	chr1	87212874	87213874	+	935.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-537.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	6.44879443419028	6.38930396704063	6.39591953934766	6.21479555878944	6.4287639385385	6.10450308703702	-0.236013819725511	0.400240007042802	0.77640626908233
Merged-chr15-58595545-3	chr15	58595107	58596107	+	750.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180139.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	5.06849530931066	5.37390550263128	5.19256170440524	5.12457999289375	5.41896283229074	4.89086379373693	-0.0831595346687862	0.830867328308504	0.960370002015736
Merged-chr4-120953948-2	chr4	120953448	120954448	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2247.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	3.55599329073008	3.53270427668209	3.53882960133815	3.54723050492051	3.08072214212178	3.26889944927874	-0.884553820142896	0.162815993095186	0.536188662408322
Merged-chr10-13983910-4	chr10	13983412	13984412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	17533.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.57398635599307	8.80967884993793	8.27008376925839	8.39644166004455	8.89710627754547	8.01463053240018	-0.106367722940123	0.719008568712316	0.927633547003347
Merged-chr2-128804873-2	chr2	128804367	128805367	+	590.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13436.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.90203034233591	4.89353501534157	4.86757238896186	4.91431743587305	4.87463252698924	5.0393156736805	0.108389436658317	0.773901844762969	0.944233330875351
Merged-chr15-27676541-2	chr15	27676041	27677041	+	833.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5001.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.24950404370669	5.08541623613177	5.43834667817635	4.96510051418493	4.90066265231787	4.96624266899023	-0.662010158508406	0.0748272894491321	0.360099970797662
Merged-chr10-24639339-2	chr10	24638839	24639839	+	551.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43897.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	5.48265049544576	5.31992773531749	5.3416845198184	5.37341415492474	4.91910267727674	4.91728752755496	-0.596563122003467	0.114517707953586	0.452029859743929
Merged-chr9-56161030-4	chr9	56160505	56161505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019793)	promoter-TSS (NM_019793)	65.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	6.06318550556631	6.3848784587652	5.87912870682725	5.57475828564806	5.13822144004256	5.56631852634984	-1.27593875991271	0.000255146316444911	0.00611293253635131
Merged-chr11-32589970-2	chr11	32589470	32590470	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 7 of 18)	intron (NM_009288, intron 7 of 18)	-52585.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.4186839133578	2.34581858301158	2.78973258223096	2.26598940777208	2.33960187461058	2.74859999407222	-0.366319363024076	0.679218832028368	1
Merged-chr15-89339882-4	chr15	89339388	89340388	+	798.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5415.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	2.75997122030801	2.68538112487718	2.8770603443647	2.9027738168363	2.6884303618941	2.49801217505572	-0.33800397768422	0.667559466473947	1
Merged-chr17-81065057-4	chr17	81064556	81065556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	29.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	6.96239418144196	7.2587354397431	6.73719771912231	6.98482408346409	7.08003639488922	6.52882869492146	-0.175698463393046	0.553988034031342	0.862575362378324
Merged-chr10-34208358-4	chr10	34207861	34208861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-810.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.4431080161382	6.24798917750757	6.59957698394544	6.30267775289433	6.39612951157617	6.73487386200569	0.0841663793661318	0.773361508832398	0.944067559391607
Merged-chr2-156201658-4	chr2	156201169	156202169	+	954.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	B3|SINE|B2	5022.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	5.98583847412361	6.04463003358195	5.88284619354053	5.58131053489001	5.56794342726577	5.60361406156641	-0.714008624829449	0.0191800993919033	0.1572042661743
Merged-chr7-30420422-4	chr7	30419916	30420916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011827)	promoter-TSS (NM_011827)	-562.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	8.31518001078315	8.36244272053359	8.22859089647474	8.47682090942206	8.61702408945713	8.25822936420349	0.222651223905874	0.304787280567338	0.701115228393427
Merged-chr8-46772998-1	chr8	46772498	46773498	+	911.0	f0_balb.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	33253.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.56527706021746	4.34456796439629	4.26404695149356	4.39120316150911	4.27441581052868	4.74131196637431	0.176466813160729	0.704505677927824	0.922445804796588
Merged-chr13-119808161-2	chr13	119807661	119808661	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17039.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	4.18980797323982	3.97195561168678	4.51517933347125	4.43924345647125	4.30851570322774	3.99556714751811	0.0826470288479248	0.871245487499277	0.970222087171093
Merged-chr9-106296935-4	chr9	106296428	106297428	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15867.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.63225132619007	4.54289019746887	5.0137333973112	5.90487762500071	5.89390329515837	5.92643732783728	2.40313281483604	5.06420314258734e-11	7.17857265908701e-09
Merged-chr2-151979328-2	chr2	151978828	151979828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	MIRc|SINE|MIR	891.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	3.86070847596059	3.61237196661305	4.07610632592964	3.64673712758009	3.76115662459659	4.01048709179563	-0.1476178891473	0.790229150451153	0.949368241827272
Merged-chr1-128729725-4	chr1	128729198	128730198	+	939.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-137399.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.1840169327993	2.94002150985408	3.05869160929145	2.86494096450836	2.7125762385854	2.95349662206943	-1.09693322363553	0.123595018509456	0.470544707581506
Merged-chr1-165770428-4	chr1	165769926	165770926	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 3 of 4)	intron (NR_149310, intron 3 of 4)	6668.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.38092357812907	5.29519061250715	5.4074902923238	5.41293456891137	5.6250482097862	5.6385824654203	0.392253783557045	0.237453793556715	0.633900839111527
Merged-chr7-19282586-4	chr7	19282107	19283107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-17.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	3.32468367237506	3.29478284711329	3.20749071105974	3.31106582479221	3.27338919518079	3.75216514016081	0.676949473928088	0.2860207349118	0.68342985932029
Merged-chr5-139324280-3	chr5	139323784	139324784	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	1180.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	5.28292511866727	5.67171168150744	5.76496562983897	5.64766840348008	5.13887743927339	5.70369934377108	-0.138565032348101	0.714749087922563	0.926044950792719
Merged-chr15-58076662-4	chr15	58076169	58077169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042438)	promoter-TSS (NM_001042438)	-161.0	NM_009572	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	5.83012611400599	6.24142999939747	5.75446382895602	6.05762947960411	6.21806629970934	5.78993377105318	0.127045106910202	0.70275558166946	0.922000148631826
Merged-chr3-31097070-6	chr3	31096574	31097574	+	936.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011386, exon 2 of 7)	5' UTR (NM_011386, exon 2 of 7)	2016.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.4828488721315	7.81640446991825	7.51588373229689	7.97285136886311	8.24765545761898	7.47684100925007	0.473540720730943	0.0932402462426076	0.406685244501488
Merged-chr18-52465643-4	chr18	52465161	52466161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026040)	promoter-TSS (NM_026040)	-32.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	6.70896846575585	6.75725616591698	6.10635322719078	7.24373511377531	6.9299248255491	6.49903450540589	0.568250918722516	0.0916970311313016	0.403261817071069
Merged-chr12-4817466-4	chr12	4816948	4817948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025323)	promoter-TSS (NM_025323)	-160.0	NM_025323	66055.0	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	6.29990168383255	6.86017180815126	6.70989744759633	6.6409020143665	6.69860448683023	6.70597032041815	0.057676137088844	0.840763775416902	0.962819298477451
Merged-chr12-52687567-3	chr12	52687089	52688089	+	839.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11794.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	3.1445524794758	2.93053464687077	2.83901032119772	2.82713542016876	2.70802355814251	2.97418613860695	-0.71944730797735	0.320901266537923	0.714648154651698
Merged-chr14-76414544-4	chr14	76413999	76414999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310646)	promoter-TSS (NM_001310646)	-462.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	7.02583754113444	6.76197479328857	6.84762779297064	6.75634292794716	6.12915315665412	6.0695898500672	-0.82542279796423	0.00958167581305541	0.0976211682444857
Merged-chr9-59752070-3	chr9	59751569	59752569	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	895.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	7.1245728464202	7.01650570144913	7.00413993225637	7.55465380483993	7.78209466806837	6.96080116486193	0.651472925831698	0.0249095248094313	0.186643110341573
Merged-chr15-79752009-4	chr15	79751482	79752482	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045069, intron 3 of 3)	intron (NR_045069, intron 3 of 3)	9284.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	6.26125265777924	5.85600570785292	6.1129097319079	5.77471586979662	5.31957639424172	5.5589323731707	-0.946876876954532	0.00511078288518865	0.0621086639858007
Merged-chr6-6281407-2	chr6	6280907	6281907	+	785.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_136906)	TTS (NR_136906)	32748.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	4.19387290531566	4.53647367864313	4.50008000679679	3.69626896920481	3.77412483148049	3.89575476014541	-1.87437576365111	0.000284837813750264	0.00667064024951645
Merged-chr6-39562855-4	chr6	39562384	39563384	+	955.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5050.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	3.43927588469359	3.53891210175581	3.59524521531275	3.68427430496486	3.50410743233177	3.61268769086921	0.273532852391704	0.627136978737324	0.893013107764865
Merged-chr5-41449663-4	chr5	41449172	41450172	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258019.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.58795548076421	2.66728715862728	2.64806755397084	2.98935642376238	3.10136798762623	3.03692311963435	2.2115742435937	0.00374544920816278	0.0495313632728558
Merged-chr6-125215499-4	chr6	125215010	125216010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009496)	promoter-TSS (NM_009496)	-71.0	NM_001080557	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	6.61956907596614	6.62651013462701	6.64668779207037	6.33092329089829	6.60971343588657	6.12765662213755	-0.38988470912174	0.171941798730556	0.550414849720006
Merged-chr5-93129657-4	chr5	93129152	93130152	+	866.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	36236.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	3.13301116826541	3.17406256196255	3.31410226860796	3.24248206072221	3.20895739556351	3.54107599637513	0.515011137346988	0.41447201119576	0.785828006486374
Merged-chr16-87703386-2	chr16	87702886	87703886	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	4432.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.5901254670504	3.30497543431988	3.72963960227957	3.44232993217122	3.41981395743432	3.75011443838994	-0.0298046071068512	0.96059088876173	0.990386809359123
Merged-chr6-34682247-4	chr6	34681741	34682741	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	intron (NM_001347100, intron 2 of 13)	-27203.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	2.82230100581808	3.13548355102844	2.88396322838364	3.02198620620531	3.10772244595159	3.25202769758893	0.756513497455006	0.279099326172038	0.67658480298895
Merged-chr19-3685985-4	chr19	3685504	3686504	+	877.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	CpG	560.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	6.94096573550115	7.40863965780873	7.32730405133909	7.33472271267548	7.30159311592217	7.04361220747957	-0.00303906152499286	0.990854206534494	0.99809932711881
Merged-chr11-118270442-4	chr11	118269925	118270925	+	944.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 13 of 20)	intron (NM_001033528, intron 13 of 20)	19819.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	4.73256528697564	4.46542606005804	4.69617906632239	4.53744220244974	4.45606139333035	4.56428384574616	-0.287864359181272	0.496139165060804	0.832884389427821
Merged-chr7-19843766-4	chr7	19843267	19844267	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8236.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	4.35226265858539	4.18955068358825	4.00789718316281	4.46406389542381	4.15854458157691	4.02657580887001	0.0968061688690124	0.845451591205412	0.963793053374187
Merged-chr8-23208437-4	chr8	23207930	23208930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	23.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	6.30371806819435	6.09977571053069	6.41424874715478	6.21376059722731	5.77931592635989	6.18928452453502	-0.350407799854486	0.259750923089561	0.65734047470913
Merged-chr13-116987434-4	chr13	116986920	116987920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	LTR31|LTR|ERV1	38096.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.19539993435381	3.68605338050342	3.84232980616225	3.88330646797769	3.89952711845177	3.8608934867607	-0.149345778793162	0.78234303908905	0.946484752418558
Merged-chr10-79996446-4	chr10	79995953	79996953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1155.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	5.01602097834408	4.65754758544837	4.9603264463816	5.14416019736215	5.37188174184513	4.91356854986356	0.606848967536385	0.128864359677323	0.479970709043449
Merged-chr13-107057262-4	chr13	107056765	107057765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34695.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	3.67943832728538	3.53210960825111	3.57025045794805	3.97429890935515	4.27665348274217	3.96712676948814	1.57785243696312	0.00359967473773878	0.0481391410443215
Merged-chr10-86972659-2	chr10	86972159	86973159	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 6 of 68)	intron (NM_138673, intron 6 of 68)	35283.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.91134288958637	5.16555378613717	5.11861828450258	5.36437472984398	4.81725818385983	4.22454940591066	-0.422124562202166	0.668139719581714	0.908976375106763
Merged-chr8-115568571-4	chr8	115568062	115569062	+	943.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138332.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.4487097290485	3.64460007127	3.85215024312711	3.4290082559435	3.3747332200706	3.73143094607696	-0.494229642933114	0.405931875626303	0.780439975167702
Merged-chr13-64368208-2	chr13	64367702	64368702	+	833.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009984, exon 3 of 8)	exon (NM_009984, exon 3 of 8)	2318.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	2.72540765604226	2.65353171117242	2.8521264255052	2.85394341905042	2.81641297241888	2.7403464280626	0.336598441482935	0.641734306601956	0.899171520014446
Merged-chr11-79625026-4	chr11	79624533	79625533	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1870.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	2.91845773848852	2.81025032798252	2.83186397631947	2.65489379105689	2.56013779645848	2.71955036931067	-1.17286786968293	0.116782363774791	0.456293525778212
Merged-chr17-81703944-3	chr17	81703440	81704440	+	983.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34447.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.76236600512622	6.46680954714123	6.67896016498357	6.7203973861028	6.89862884415091	6.8736715107053	0.304164840554399	0.245760566318171	0.642821080898342
Merged-chr8-83768749-4	chr8	83768252	83769252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-27441.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.92286541431064	3.457062415468	3.86236780591642	3.4395662606186	3.35950659166155	3.52499835568059	-1.14753642212976	0.0547367653102456	0.300490649068741
Merged-chr11-115164592-4	chr11	115164113	115165113	+	962.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1272.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	6.57107341970293	6.13097375536352	5.89769755457281	6.58332546144307	6.43061441683254	6.13356763658667	0.261314989439886	0.430033984410475	0.796081422417611
Merged-chr13-81132098-4	chr13	81131543	81132543	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	167969.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.69970204888266	6.51766448466215	6.54799672416867	6.55842024041667	6.57837194465073	6.02288221440596	-0.267522175509887	0.370750651670374	0.755026439587207
Merged-chr15-33184521-2	chr15	33184021	33185021	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	101392.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	5.70494999593638	6.06965700637326	5.98149682149645	6.10288668988727	6.28899535402155	6.38793568801491	0.572076156597043	0.0600426779643937	0.317208326861033
Merged-chr10-96035250-4	chr10	96034755	96035755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 22 of 28)	MTEa|LTR|ERVL-MaLR	94592.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.92644326279687	4.93112257754565	4.5028108036841	4.83186068772496	4.41897286386922	4.74113177743544	-0.329423720387837	0.452571290766694	0.809456767794566
Merged-chr19-41313922-4	chr19	41313420	41314420	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-49916.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.66817787818365	3.57770143152951	3.84019179802451	3.8095122488511	3.71142201069903	3.54141828454373	0.0111604992015074	0.983921152564078	0.996459527787537
Merged-chr4-43975069-4	chr4	43974570	43975570	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-8434.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	4.05890586927821	3.68952785680416	3.60120142553086	3.56939860635991	3.53903998966116	3.83063470856454	-0.527725473520615	0.359314892209092	0.745475101759799
Merged-chr10-52420899-2	chr10	52420399	52421399	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	3352.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	4.27204489088401	4.43856052844573	4.71049956294846	4.3864168900747	4.18878681842963	4.24791923341802	-0.524179672160465	0.257605890458944	0.655035714197014
Merged-chr1-135685154-4	chr1	135684641	135685641	+	823.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34922.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.67641048492859	3.45444247037931	3.80837087726683	3.23913174547586	3.13028158928986	3.78391693069117	-0.868770424523944	0.189393143853254	0.575230862671249
Merged-chr2-90559111-4	chr2	90558620	90559620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	21527.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.95712877274906	6.764108467989	7.17543637425553	6.92662232569083	7.22262412069707	7.42578598957831	0.355541879760261	0.195362662842949	0.583020169139918
Merged-chr7-75609360-2	chr7	75608860	75609860	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	153826.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.6442055389495	4.49542975099753	4.39185190535518	3.54409630521192	3.41501710715557	3.72332868815013	-3.2464062720547	3.05230540401798e-08	2.4948548925101e-06
Merged-chr4-32238628-4	chr4	32238122	32239122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-178813.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.49115482791972	6.28327446429972	6.12747613190025	5.73964284056166	5.3269093609704	5.61552592906493	-1.3258068255878	3.86271501454778e-05	0.00127492578711024
Merged-chr4-121016651-2	chr4	121016151	121017151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	596.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	7.49005490641728	7.43542591828012	7.42719366701286	7.74595810427876	7.28778699381676	7.17027418743592	-0.0306195349424113	0.906964630558362	0.978868492078838
Merged-chr19-9917962-4	chr19	9917484	9918484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18451.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	6.61490249537648	6.53414871985257	6.27274946253276	6.60367839803989	6.69933482668387	6.26924003528801	0.09290844559123	0.748083840965225	0.936880860325556
Merged-chr15-86278720-4	chr15	86278204	86279204	+	841.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	1029.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.05288910289566	4.13541032850152	3.95917871316979	3.48482949680237	3.27212074559108	3.43371293083711	-2.39985373334302	5.18692764107847e-05	0.00163235202405014
Merged-chr5-102031066-4	chr5	102030559	102031559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	38862.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	8.03678623307082	7.90183939563438	7.99913268162809	8.10132508478697	8.50738625987976	7.89886895325262	0.316744672565614	0.205630325163711	0.596170316941535
Merged-chr3-9006445-2	chr3	9005944	9006944	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1721.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.07256688523827	6.25131860771198	6.21533344690769	6.05901152311879	6.2872168911221	6.44360075213188	0.146404906224898	0.614769959232511	0.887604253319171
Merged-chr10-19047581-4	chr10	19047094	19048094	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32184.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.71554149208929	3.66491864157148	3.4215321236909	3.56979634849429	3.38751194888366	3.54988110924715	-0.410123232156504	0.480407521196034	0.824543506620807
Merged-chr5-24578793-4	chr5	24578287	24579287	+	948.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1320.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	5.45539707614935	5.69534560301237	5.6228011814621	5.75210438920239	5.52641349978699	5.88477055008397	0.2289293098848	0.487938829285727	0.828749012190382
Merged-chr6-113343916-4	chr6	113343379	113344379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133926)	promoter-TSS (NM_133926)	43.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	7.32872915144168	7.52198279897005	7.30981567463943	7.06101713840718	7.31809636212427	7.07312561752909	-0.34253114059227	0.16104558118402	0.533698004623889
Merged-chr7-70099220-4	chr7	70098724	70099724	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	238598.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	2.33338468475379	2.49723929642412	2.21570054766187	2.43354455748426	2.26470801410482	2.80091340213311	0.967331121689421	0.287969235567684	1
Merged-chr2-29053119-4	chr2	29052612	29053612	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1954.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	4.47038520670937	4.28074066466899	4.59144346402684	4.66932175303974	4.59108086048323	4.57705166440419	0.416732760969035	0.329872606707154	0.721504110160967
Merged-chr4-32560441-4	chr4	32559978	32560978	+	972.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11184.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	7.06215878471915	7.02201900421173	6.69890779480635	7.03526879409701	6.93348089143864	6.70756962319149	-0.0636678011551628	0.810873211533886	0.955096593239846
Merged-chr18-9212178-3	chr18	9211683	9212683	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-673.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	3.43749118706467	3.60522070046329	3.43736930938454	3.29864094231925	2.85708114116113	3.09667868952884	-1.71454358934482	0.0137933526262749	0.125488441430908
Merged-chr10-37249748-3	chr10	37249214	37250214	+	747.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110788.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.77692257903988	4.66653113112269	5.34742900292964	4.97876523532016	4.78453445294305	5.12458082061816	0.0209923211039183	0.961484659744941	0.990604684976314
Merged-chr10-59238700-2	chr10	59238200	59239200	+	913.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	16778.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	4.85005646490037	4.73451851396733	4.88396325666042	4.76821987697207	4.93031395218661	5.1178588445153	0.265968246080938	0.496356557486475	0.833014046698963
Merged-chr11-84462967-2	chr11	84462467	84463467	+	660.525024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 9 of 12)	ORR1D2|LTR|ERVL-MaLR	50534.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	2.71430289888691	2.80566332947627	3.03485930763594	2.68568987437293	2.82930564966455	3.05051171203697	0.0300996648561277	0.967401930413068	0.992555129128888
Merged-chr17-28015171-1	chr17	28014671	28015671	+	695.0	f0_balb.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65413.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.31685094681536	5.06507058607341	4.58440667972385	4.37071951167128	4.64308914169647	4.73829067013814	-0.999587367910052	0.0266866438570484	0.194383863963785
Merged-chr14-118690487-2	chr14	118689987	118690987	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-13556.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	3.56435380945777	3.38279059336523	3.68363425119111	3.85513943904637	3.89747121398029	4.13194137866929	1.40062257964856	0.0117330927781787	0.112462525502442
Merged-chr6-15625798-2	chr6	15625298	15626298	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94863.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.57099013659836	3.67523103921797	3.6952749356377	3.66091248673994	3.61026924458977	3.55183979421116	-0.125527082160324	0.819279445306714	0.957250636594552
Merged-chr11-100738313-4	chr11	100737804	100738804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-89.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	7.6076841395231	7.79918215664376	7.56633282628439	7.65583039642472	7.99663593240448	7.70772850402341	0.196476754958219	0.408421354052371	0.782032951304577
Merged-chr10-127597484-4	chr10	127596999	127597999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23649.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.57154506053427	8.27993279950473	8.38872868719621	8.30186115569	8.54721315434172	8.47785702266056	0.0384149179822664	0.860020840298786	0.967441103100897
Merged-chr2-167925175-4	chr2	167924659	167925659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.45908826302581	7.48095012308167	7.52533133351769	7.44975030996408	7.80177477588758	7.17694412557844	0.039827598407858	0.879363323994856	0.972083703102674
Merged-chr1-34843435-2	chr1	34842935	34843935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160235)	promoter-TSS (NM_001160235)	-385.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	7.78071948068458	7.61399307104034	7.43146623850348	7.77231454129913	7.86864113306941	7.65955889286692	0.217700645719075	0.350638014433236	0.738611374521169
Merged-chr10-42274450-3	chr10	42273942	42274942	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2300.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.8027228887024	4.66931540093398	4.96923856058804	5.09943636282542	4.87275252206886	5.37250489692705	0.667525696775299	0.0972637627191033	0.415842316736777
Merged-chr16-18289368-4	chr16	18288870	18289870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033324)	promoter-TSS (NM_033324)	-202.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	5.54938090365682	4.98269550908241	5.16057696861687	5.98614216586331	5.14421648158684	5.8025355378853	0.8209701266571	0.0527160914603957	0.293778081725042
Merged-chr18-49609445-3	chr18	49608946	49609946	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86157.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	3.29976167575977	3.10741093501921	3.12346249044025	3.07205733023236	2.75664646747851	3.25261247393566	-0.632549817494434	0.374992429243968	0.758351441305921
Merged-chr11-4232813-3	chr11	4232304	4233304	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3981.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	4.52608110879022	4.40509810527186	3.65459678610532	3.37672978312597	3.08146854195631	3.73097316829808	-2.64451364035063	0.0235421809668061	0.179844666305181
Merged-chr4-74271411-4	chr4	74270924	74271924	+	880.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 2 of 20)	intron (NM_001356561, intron 2 of 20)	19545.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	3.45778200186245	3.43560294201169	3.21357484490993	3.25725892632992	3.07545627833162	3.28635739904327	-0.714705782709677	0.258553532239407	0.656126823341666
Merged-chr7-139949981-4	chr7	139949488	139950488	+	761.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6132.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	4.03103951314811	3.69491333038945	3.93203130339993	4.08146653773973	4.05302663100295	3.900347136255	0.380036380883318	0.46131103089553	0.814992635038861
Merged-chr19-5460636-4	chr19	5460121	5461121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253832)	promoter-TSS (NM_001253832)	14.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	6.11708062720611	5.91406051384144	6.36269742166082	6.00557089137791	6.0814795144272	6.52353589816659	0.133212024277288	0.680171049470112	0.914139397449033
Merged-chr11-114968939-4	chr11	114968388	114969388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8471.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	6.42524040488738	6.29993987713512	6.33443673932327	6.63107778160196	6.98173483717255	6.91868386879239	0.794170478416114	0.00325466848044561	0.0447871389281661
Merged-chr4-8838906-2	chr4	8838406	8839406	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 15 of 36)	intron (NM_001355382, intron 15 of 36)	87582.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.16341815470706	4.26326232222168	4.18890183492787	4.45419282548117	4.71020945562995	4.56773635038468	0.97843354553926	0.0276790383348519	0.198544916525213
Merged-chr16-55817153-2	chr16	55816653	55817653	+	925.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 6 of 12)	(T)n|Simple_repeat|Simple_repeat	4985.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.26190911898536	3.30603626408651	3.44337356752174	3.03698648483276	3.11206618675961	3.24353442918815	-0.865851735716046	0.173717033458262	0.55292812026605
Merged-chr9-14893628-3	chr9	14893130	14894130	+	812.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176807, intron 4 of 4)	MTEb|LTR|ERVL-MaLR	10321.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	2.18213851829907	2.0808830707789	2.37636819804502	2.05002804124485	2.163615082264	2.0601690335435	-0.872043502639575	0.344839940323008	1
Merged-chr12-111436676-7	chr12	111436152	111437152	+	978.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.49702074252362	8.31700626934348	8.01379676210752	8.26531519090855	8.40736346571408	8.3819840959642	0.0772509452709881	0.737521544952529	0.933775317218453
Merged-chr19-56375713-4	chr19	56375197	56376197	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008733, intron 11 of 41)	B4A|SINE|B4	14341.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	4.07309918419944	3.9505029543727	3.97852221303957	3.84573511116271	3.68638251279536	4.13870809514119	-0.338279935150963	0.518413035215172	0.845209495928051
Merged-chr3-9826333-4	chr3	9825845	9826845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	7334.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.43809965183583	4.33105934580116	4.16401156858501	4.58074686651668	4.78929148225498	4.75694035817957	0.960866758208049	0.0284374277364313	0.201878806167816
Merged-chr16-92418464-2	chr16	92417964	92418964	+	993.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	ORR1A1-int|LTR|ERVL-MaLR	-18386.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.18079816894386	7.45374930014694	7.25135163066327	6.11603702913412	6.26143468519808	6.1507460378971	-1.75839934056026	3.45686321315395e-11	5.06406116619918e-09
Merged-chr9-90258295-4	chr9	90257790	90258790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	12479.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.20448777568208	7.13672975709208	7.07669203809424	7.33883880781502	7.33703986506756	6.98365510004414	0.144644537665609	0.559628728670003	0.865001482687873
Merged-chr4-149104078-4	chr4	149103556	149104556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010044)	promoter-TSS (NM_010044)	-86.0	NR_104263	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	4.21133077552288	4.16671175482103	4.15596810219043	4.34367344635231	3.93241236309565	3.97788581932631	-0.227712957309905	0.64504376077515	0.900402236225432
Merged-chr4-97751973-4	chr4	97751487	97752487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-25639.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	8.55592079597903	8.86571067925194	8.3618133849822	8.50308237211491	8.84185499726099	8.31092191376436	-0.0537164760079829	0.83389086667617	0.961123533228855
Merged-chr2-132586065-3	chr2	132585564	132586564	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7816.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	3.86672032405488	4.03560269375905	3.83077358778075	3.85030440065316	3.86050958465717	4.26951443496705	0.240615504758255	0.647674284650679	0.901510214793849
Merged-chr12-4621341-1	chr12	4620841	4621841	+	547.0	f1_balb.idr	intron (NM_001198969, intron 2 of 16)	L1_Mus2|LINE|L1	28333.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	3.49997455997695	3.43701924131328	3.85822782927071	3.38981153370195	3.28595425986601	3.69237948088702	-0.521944448959982	0.395042340493993	0.772579826044138
Merged-chr11-5838027-4	chr11	5837524	5838524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017401)	promoter-TSS (NM_017401)	-8.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	5.63882136144409	5.87627905962236	6.22246002548045	5.97970387750322	5.63867207215823	6.2254576570214	0.0599312756605303	0.865114437179648	0.968574301518356
Merged-chr11-101984250-4	chr11	101983770	101984770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	8.56566770986991	8.44353625516589	8.16685710480689	8.42845422007304	8.70116003025071	8.17371159191591	0.072835498997195	0.768607240984833	0.942871018290895
Merged-chr4-6367036-3	chr4	6366498	6367498	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1318.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	8.29860983602635	8.83226136084493	8.17498083628618	8.56981965777562	9.02704598165014	8.41719886206885	0.316825310141845	0.266023978071213	0.663824402864358
Merged-chr7-109516916-5	chr7	109516458	109517458	+	673.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2237.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	3.50487957408753	3.07549350453115	3.1231397285447	3.18793080435211	3.19785450286086	3.42480317060265	0.0660240135283625	0.920683100660542	0.982463724790289
Merged-chr8-123030171-1	chr8	123029671	123030671	+	931.0	f1_balb.idr	intron (NM_001081379, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	12113.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.02040437556755	4.31502881541726	4.16558220861615	4.63836354330418	4.19024085172062	4.37275401519755	0.628566348899118	0.193022250316671	0.580175392997493
Merged-chr5-107868518-4	chr5	107867997	107868997	+	888.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	CpG	6610.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	6.20799017672663	6.1732590161754	6.29162790107706	6.26588093191585	6.04154026596591	6.05766364889102	-0.161642822004024	0.569574875089712	0.8688875602138
Merged-chr5-32743862-2	chr5	32743362	32744362	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	2480.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	4.123718360279	4.22930137789664	4.01139412134441	4.02882476337703	3.98569389644711	3.98055383709995	-0.384385736567957	0.428503596261979	0.795368392855003
Merged-chr5-34535181-4	chr5	34534747	34535747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-8118.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	7.38667894512638	7.39768987090071	7.66692157988348	7.29574517247216	7.44082686722357	7.19955396839692	-0.238392890424181	0.323220507826337	0.716595135094025
Merged-chr5-36534828-2	chr5	36534328	36535328	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 3 of 13)	ORR1E|LTR|ERVL-MaLR	-4205.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.36969086883327	3.41628629994368	3.43334133708999	3.61399650241659	3.36397553127542	3.33311013317155	0.146310264212734	0.805708132149197	0.953956034266138
Merged-chr16-44120309-4	chr16	44119803	44120803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18956.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	8.17840013196585	8.37048303027058	7.6444016270018	8.12607324952268	8.18947849568143	7.60975027007746	-0.141848151050978	0.626557551654837	0.892916235446326
Merged-chr8-56217655-1	chr8	56217155	56218155	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-76897.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	2.90001078831283	3.27364642058659	3.13033336344501	2.93728707496988	3.11003293841379	2.89895016275096	-0.542973234392432	0.441424812658903	0.802597583509352
Merged-chr7-49759173-4	chr7	49758702	49759702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146052)	promoter-TSS (NM_001146052)	96.0	NM_001146049	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	5.65761759463566	6.14373099216875	5.79417761418131	5.68025028208447	5.6755335705029	5.80537990280417	-0.307908241661754	0.34946013116735	0.737499871486835
Merged-chr11-23665941-4	chr11	23665448	23666448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	-13.0	NM_023651	72129.0	Mm.29536	NM_023651	ENSMUSG00000020283	Pex13	2610008O20Rik	peroxisomal biogenesis factor 13	protein-coding	8.65523062403719	8.76106111004651	8.41457013161673	8.48257772748539	8.63009178228924	8.26621686016291	-0.206233639118358	0.36432666165911	0.749738197211813
Merged-chr7-87926484-9	chr7	87925985	87926985	+	785.523804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	342317.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	6.1726767319978	6.65609968816129	5.72700478453129	6.10910142219595	6.16993166832705	5.79085814680993	-0.360756592255697	0.324153600283004	0.717287790132387
Merged-chr1-59496113-4	chr1	59495618	59496618	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13971.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	4.18034633855066	4.16490369303271	4.09946835787882	4.34163247692663	4.3198875135724	4.43702542173339	0.575680225216597	0.205491923200638	0.596080597722807
Merged-chr6-100286713-4	chr6	100286202	100287202	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 1 of 4)	CpG	656.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	6.25798086042777	6.49638265400945	5.87021451287222	6.31362637289818	5.92710906199034	6.17045542860251	-0.174219705746892	0.593501048569804	0.878539957258253
Merged-chr17-5521749-4	chr17	5521258	5522258	+	936.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	29158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.88789362838988	5.15230772329013	5.02720748927567	4.89955522454661	4.48374997008669	4.87948948167661	-0.602195559049735	0.141737466698971	0.502522098474073
Merged-chr15-100083723-2	chr15	100083223	100084223	+	743.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	B1F|SINE|Alu	45059.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	7.43061623590555	7.29580046086596	7.31904263128964	7.4012056306959	7.51000882701721	7.38729504234692	0.127536666513958	0.574800190111958	0.870897960938778
Merged-chr8-22808012-4	chr8	22807532	22808532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2378.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	7.06633833641189	7.09033411994211	6.71247083008741	7.17509678327925	7.48622002749881	6.93057612350254	0.380472913936844	0.17614946025349	0.556329017261536
Merged-chr4-101192209-2	chr4	101191709	101192709	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 2 of 24)	intron (NM_146145, intron 2 of 24)	73073.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	2.88553491565475	2.96237747752025	3.02578476373192	2.93399490214041	2.87490193389291	3.20901220390821	0.232484451958289	0.735597962731429	0.932744628746236
Merged-chr14-70774288-4	chr14	70773777	70774777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010071)	promoter-TSS (NM_010071)	-104.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	6.13392569757306	6.21517763475905	6.41178169016393	6.0831463687441	6.24990257781352	6.60381160701057	0.11533477056171	0.703560388076183	0.922108924938678
Merged-chr5-121382611-2	chr5	121382111	121383111	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2798.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	4.88001774324823	5.114630137439	4.84389101403091	5.07684510844837	5.12549893176976	4.98592846673396	0.233550682076005	0.536389391463171	0.853950369477035
Merged-chr11-103265429-4	chr11	103264929	103265929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	1972.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.73839380540006	6.41995658880414	6.03524299095393	7.0110413125841	7.15248956684057	6.62745963536077	0.804951583283835	0.0122653387226917	0.116006322853313
Merged-chr2-25557785-4	chr2	25557280	25558280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021519)	promoter-TSS (NM_021519)	-120.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	8.85266506576005	9.01479401279564	8.45841652307622	8.74066449993774	8.77427290185579	8.26362183768749	-0.250835427600637	0.334462060137298	0.724982913483844
Merged-chr5-118425314-2	chr5	118424814	118425814	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135405.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.61979729562369	2.71172956334031	2.67151052457845	2.34598614378622	2.52484865140125	2.49168155397125	-1.25706063532488	0.123107423762637	1
Merged-chr10-80655847-1	chr10	80655347	80656347	+	543.0	f1_c57bl6.idr	intron (NM_145361, intron 1 of 8)	intron (NM_145361, intron 1 of 8)	1224.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	3.74943992574096	3.37550271375726	3.61974964766422	3.67348848746934	3.45882010532717	3.69001105453516	0.05642201440164	0.922810254891568	0.982621045978137
Merged-chr19-59074588-4	chr19	59074103	59075103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1466.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	6.87957176486672	7.14337420767496	6.97302548410272	6.78099225436167	7.22687480466373	7.24247932165752	0.145282239847277	0.590780692041945	0.877301111216348
Merged-chr11-58955088-4	chr11	58954575	58955575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	390.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	7.88948149252141	8.42609014264863	8.0646457437733	8.02601552735187	8.44042738313538	7.89782646369941	0.000242276289690488	0.999285727655267	0.999910611702577
Merged-chr5-92348388-3	chr5	92347883	92348883	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021274, intron 1 of 3)	intron (NM_021274, intron 1 of 3)	506.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	5.32259213287892	5.23905883702228	5.00256481320978	5.62833781125059	5.84945619671779	5.51151858584086	0.912036503153116	0.00952510249089098	0.0971633191350344
Merged-chr7-30561258-1	chr7	30560758	30561758	+	542.0	f1_balb.idr	TTS (NM_025498)	TTS (NM_025498)	-1612.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	2.9340164855007	3.38921438921643	3.45766425637206	3.13872024797671	3.14473078123355	3.42430366894804	-0.159809700914269	0.815664562271232	0.956465653447018
Merged-chr7-19003320-4	chr7	19002810	19003810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	-755.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.30543158966616	5.84538690527601	5.77057047230414	6.36631286306466	6.46181418898582	6.37829518803013	1.28223642924469	6.82107726175099e-05	0.00204455402303954
Merged-chr2-25624564-2	chr2	25624064	25625064	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007995)	TTS (NM_007995)	-2559.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	3.35027649229475	3.76242625115835	3.97911385373178	3.74100591461421	3.33254845855137	3.95782936119985	-0.0657450755861599	0.918077990497243	0.981747877135909
Merged-chr17-83214295-4	chr17	83213791	83214791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-992.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.79273437339459	7.04628566277721	7.30676904250214	7.24776895702898	7.24392976660669	7.36406422775253	0.340829672574468	0.189177189683406	0.574826745514784
Merged-chr10-118098155-4	chr10	118097647	118098647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43640.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.07152055041961	7.85872325995432	8.01281124491203	7.97180089797578	8.12937617989431	7.96473069747299	0.0636101597768571	0.769572108787847	0.943146422326599
Merged-chr3-86224246-4	chr3	86223735	86224735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	-455.0	NM_030695	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	4.11422486235263	4.0142194427003	3.79416147714774	3.52240968333456	3.45837972076705	3.65275526693668	-1.57807746102705	0.00475504307934071	0.0591858825049785
Merged-chr11-106216434-4	chr11	106215931	106216931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-64.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	7.62062530625262	7.70985212829064	7.62107711086128	7.72405667485351	8.0023407394819	7.61083275058626	0.210336638236529	0.369398856414395	0.754116709983023
Merged-chr6-97487379-1	chr6	97486879	97487879	+	1000.0	f0_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	441.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.96781045186756	8.19555829774676	7.96034736324814	8.17351924627464	8.43796280844846	8.11922566233181	0.292440143611006	0.198485256389487	0.586786239054126
Merged-chr12-91759026-2	chr12	91758526	91759526	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	RMER6A|LTR|ERVK	27410.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.90002641950578	5.00252728183132	5.26728136878105	5.0146048132875	5.28232431150731	5.72290294233339	0.622101073590209	0.122411735224454	0.467982341583108
Merged-chr11-46804627-4	chr11	46804153	46805153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6146.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.81500256018836	5.6192035678833	5.92159380844199	5.75318351218602	5.69034630051449	5.7919026668839	-0.074837864405639	0.810967709075511	0.955096593239846
Merged-chr6-124316143-3	chr6	124315651	124316651	+	899.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 6 of 16)	intron (NM_001170395, intron 6 of 16)	11500.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.62510858508431	4.51098383149437	4.81424289034625	4.48130110826363	3.94671910544904	4.80958210475052	-0.485931661652915	0.339768356104292	0.729397455488285
Merged-chr16-27391175-1	chr16	27390675	27391675	+	544.0	f1_balb.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	2219.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	6.19180693438571	6.40561378309683	6.16977367647803	6.38436119313105	6.68555987925337	6.62452058709747	0.499676111881799	0.0757156501176226	0.36229025284676
Merged-chr8-114473784-4	chr8	114473285	114474285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	34133.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	3.54778802297213	3.50531862616869	3.73021484111121	3.31230513297771	3.23020822682212	3.54969168892038	-0.870900448129331	0.147139155460959	0.511930918904408
Merged-chr4-41353485-4	chr4	41352976	41353976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1513.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.91488695095466	6.16643750471643	6.07456373382309	5.77026896342122	5.99123234465268	5.80441549010965	-0.33245196722107	0.274773242210095	0.672180813574537
Merged-chr8-35430745-4	chr8	35430268	35431268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55027.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.15964121303879	4.01600918624588	4.1437538282841	3.95206869749109	3.90176681105609	4.12038239774191	-0.350552589339097	0.473459623515819	0.82090428702971
Merged-chr5-29434702-4	chr5	29434194	29435194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033457)	promoter-TSS (NM_001033457)	27.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	7.13775959115452	7.42757849616035	7.21440083269761	7.06918549230985	6.90145520809405	6.99184903443595	-0.425511859010723	0.0840061260183349	0.383661081936741
Merged-chr10-80855235-4	chr10	80854730	80855730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025349)	promoter-TSS (NM_025349)	-21.0	NM_001359148	66094.0	Mm.379101	NM_025349	ENSMUSG00000035215	Lsm7	0910001B06Rik|1110033F18Rik	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.99083099944264	4.09349672379059	4.07789500253659	3.9590470806771	3.76180976720443	3.85204963263008	-0.602881056263064	0.230602885323303	0.626381219532661
Merged-chr2-68796690-2	chr2	68796192	68797192	+	830.333374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-64749.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.70224810869115	4.84805518008596	4.99150026145082	4.59317816295423	4.51040270360728	4.98933210328168	-0.33564766204036	0.428109473260222	0.79490623370532
Merged-chr11-90225439-4	chr11	90224947	90225947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.69282968756729	6.93092931672527	6.82329423639832	6.22548521953052	6.67498956780674	6.73278283572455	-0.404238396423533	0.156965888554685	0.527816433819287
Merged-chr5-143052059-3	chr5	143051575	143052575	+	864.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	60945.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.84695099605623	4.81354457027804	5.0705546339981	4.83572601156156	4.84513042186802	5.03533784318551	-0.00970538965179966	0.979995291367091	0.995416130723271
Merged-chr2-32154826-2	chr2	32154326	32155326	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	3678.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	3.16864254612382	3.00555627050335	2.85598790083179	3.11653734403494	2.81151268370276	3.05526790416213	-0.103805947177744	0.883557288452014	0.97338816689636
Merged-chr7-100536467-2	chr7	100535967	100536967	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-633.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	6.09377308778472	6.27072178803781	5.91778995177563	6.05489599898013	6.35561894636773	5.95472459014146	0.0591439476467534	0.848944580900972	0.96447318698008
Merged-chr8-69995556-2	chr8	69995056	69996056	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	828.0	NM_001286450	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	6.94338805895859	7.05802682617654	6.75385862620983	7.01893444935809	6.87546759648264	6.66326324945586	-0.0998277792815324	0.704318797624889	0.9223772679418
Merged-chr12-79638134-3	chr12	79637628	79638628	+	754.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	286605.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.08849795674523	4.03565118622017	4.02373908617686	4.20244693483694	4.33362775222803	4.68028940810408	0.983997476588935	0.0414304246730292	0.25445399883329
Merged-chr16-16035731-3	chr16	16035279	16036279	+	916.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	Lx9|LINE|L1	111072.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	3.37617790498173	3.46542919970306	3.54661383723657	3.50437677020218	3.48445518674265	4.03990634594333	0.806845253553824	0.181839068613643	0.564464287304756
Merged-chr11-79642224-2	chr11	79641724	79642724	+	618.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	PB1D10|SINE|Alu	-19061.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	2.88995296461516	2.84265092653147	2.83577941804992	3.07800959800895	2.67161932738043	3.08878953050139	0.476095014041663	0.515958888604482	0.844009450734964
Merged-chr1-97647778-3	chr1	97647286	97648286	+	909.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	13890.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.81570465038716	5.09209754921696	5.01571515366142	4.87807274270522	4.89686337479143	5.20796614219083	0.0303208423419228	0.937910548545072	0.986208799405284
Merged-chr13-9761761-2	chr13	9761261	9762261	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	2049.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.04771734759661	2.9095522414825	3.09366992011959	3.12694600553745	3.17021961067237	3.04714610704128	0.4642345610873	0.481789697094667	0.825208669475694
Merged-chr9-120776758-4	chr9	120776238	120777238	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138512.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	3.9876184815513	3.75231785184353	3.6680016881478	3.29518835431628	3.07920247704628	3.34502208668604	-2.2999459548574	0.000332151849592802	0.00758235695498433
Merged-chr16-33416470-4	chr16	33415967	33416967	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	RLTR40|LTR|ERVK	16022.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	6.13545005176758	5.68194818921995	5.79057536511139	6.2672316739604	6.34638217067343	5.45907965996158	0.355698001378841	0.351716842010503	0.739433218716925
Merged-chr1-36568985-2	chr1	36568485	36569485	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	ID_B1|SINE|B4	-10604.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	5.39608907726889	5.32293310498386	5.64557397283007	5.3684233547417	5.67951660747143	5.54657173823413	0.174692415946636	0.610394345340691	0.88555733136329
Merged-chr9-54863676-4	chr9	54863179	54864179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022655)	promoter-TSS (NM_022655)	-76.0	NM_022655	64602.0	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	6.59507810896379	6.73513942775479	6.53074889168989	6.28741165614105	6.21470081001311	6.31113459762754	-0.589486280210529	0.0273589750397534	0.197132455412868
Merged-chr12-91768460-1	chr12	91767960	91768960	+	541.0	f1_balb.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	17976.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.21450289496666	3.98068669299402	4.01253819238423	4.1747651634747	3.95210649023004	4.47459327118136	0.368420369840471	0.467830025430193	0.81815434317961
Merged-chr4-53187398-4	chr4	53186905	53187905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27510.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.36988236267919	6.59503875201886	6.46284383336628	6.4898137051762	6.84187467549951	6.4480171989848	0.218766357137519	0.439514498348102	0.801207632348534
Merged-chr11-58199498-4	chr11	58198998	58199998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018738)	promoter-TSS (NM_018738)	-58.0	NM_018738	16145.0	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	6.02407743931078	6.56254059037475	6.42060321759619	6.54391438500676	6.67385750434588	6.63560555919353	0.425341753929619	0.148260496901317	0.513762236213799
Merged-chr9-118631801-4	chr9	118631288	118632288	+	866.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	Lx5c|LINE|L1	25079.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.77502089715442	5.70568812276379	6.00199246649658	5.75088969793115	5.8478227912981	5.70026172749873	-0.0906023800002379	0.771569636358834	0.943614978016208
Merged-chr11-95385797-2	chr11	95385297	95386297	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016752, intron 1 of 8)	intron (NM_016752, intron 1 of 8)	941.0	NM_001357797	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	4.10813484949614	3.80478187879436	4.01812303405898	3.92042070484182	4.07008560092193	4.08658515442072	0.136264343298876	0.786537119149923	0.948530822116986
Merged-chr2-125625220-4	chr2	125624723	125625723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081091)	promoter-TSS (NM_001081091)	-110.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	5.10831689741594	5.25896199429278	5.08333508774966	5.15018595475688	5.0048648663885	5.00567681403263	-0.213300868240987	0.557127283267932	0.864055599824012
Merged-chr15-76799617-4	chr15	76799115	76800115	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	18555.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.19533724638372	5.14311346433413	5.51947288469245	5.1375362757715	4.96998562374223	5.52879955584433	-0.136178141349956	0.726220772022792	0.92976141932693
Merged-chr11-51919616-2	chr11	51919116	51920116	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-48015.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	4.06169201109928	4.09715665069409	4.43934322993313	4.03851405270906	3.98225594339473	4.46551570007523	-0.0918548937022354	0.857146394106606	0.966690212131128
Merged-chr4-62429856-4	chr4	62429362	62430362	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153504, intron 2 of 2)	intron (NM_153504, intron 2 of 2)	4864.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	3.83637259348404	3.22960992132023	3.28785099007619	3.22872463417791	2.96440188805385	3.30260702073205	-1.26097888580186	0.0692518690094681	0.344409151666955
Merged-chr17-12992469-4	chr17	12991965	12992965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	74.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	8.41300797690876	8.43045328825243	8.31392294282009	8.40982217864874	8.0709724029853	8.23212862649966	-0.20307613794629	0.349463332047194	0.737499871486835
Merged-chr7-134669789-4	chr7	134669386	134670386	+	833.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	-801.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	4.31074543166667	4.00457190460071	4.34649997394367	3.83261892442361	4.04539567459685	4.05921638892605	-0.69219625034411	0.167736226115182	0.543771999165935
Merged-chr4-133688581-3	chr4	133688126	133689126	+	870.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 12 of 19)	intron (NM_001080819, intron 12 of 19)	-15460.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.80233280432393	3.7936246144959	3.7557406167272	3.71845714031501	3.68421810189647	3.49460798141372	-0.479546147166432	0.38005443725451	0.762307627400282
Merged-chr4-63559517-4	chr4	63559077	63560077	+	887.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	-650.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	7.3819799160418	7.75724319656759	7.49310972962506	8.04485566231855	8.18171876084769	7.43036954849779	0.542597159116806	0.0563402307542206	0.306002475234803
Merged-chr12-98265218-4	chr12	98264705	98265705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3430.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.13817953828334	7.20026131356612	7.27005392967383	7.17080646233142	7.3672566289816	7.16113598326005	0.0624939612042687	0.791950410127966	0.949839887482488
Merged-chr3-144692228-4	chr3	144691704	144692704	+	946.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	28131.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.62658804779102	4.72036005593678	4.48856046698934	4.99355695719111	4.6574880444616	4.72667287297027	0.412256721533314	0.323399658211074	0.71668986599242
Merged-chr4-9657511-4	chr4	9657019	9658019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	11643.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.58969315606088	7.44081865229729	7.33032980859354	7.60542556194568	7.44645995307517	7.31870442082644	0.00440461733071687	0.985203949628216	0.996873682039026
Merged-chr2-38956147-3	chr2	38955671	38956671	+	777.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172854, intron 6 of 7)	intron (NM_172854, intron 6 of 7)	24191.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	3.29183985747202	2.93717690671689	2.97078305944981	3.16498756881749	2.91119776164532	3.1057035005613	-0.0813872941647509	0.906679928876186	0.978788026699313
Merged-chr5-124030625-2	chr5	124030125	124031125	+	872.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1635.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.91728854856245	5.15040406972082	5.22316468559125	5.7045595485699	5.8837699497322	5.25453477727594	1.08589415322956	0.00374113930272713	0.0495058395517365
Merged-chr7-19295996-4	chr7	19295500	19296500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013648, exon 10 of 10)	3' UTR (NM_013648, exon 10 of 10)	4931.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	2.38149274949336	2.37726553636887	2.6461091398402	2.35626708954149	2.17341374615719	2.4117237001033	-1.02052971760371	0.236281346886292	1
Merged-chr5-123057402-2	chr5	123056902	123057902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-10386.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	4.56477600224462	4.56425588814198	4.4852395425857	4.82044680406061	4.60231906976625	4.71789234737971	0.409489033422836	0.320815521518212	0.714576061099323
Merged-chr10-12573833-4	chr10	12573332	12574332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	287903.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.35041619998859	3.18171315720462	3.32558572307477	3.30834090486504	3.56930336209013	3.39719870054953	0.579245063330975	0.342954239163827	0.731850600409781
Merged-chr8-46151692-6	chr8	46151203	46152203	+	919.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11948.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	6.17185059984906	6.05862966993392	5.75628161444687	6.28492428572656	6.20616577947772	6.13919492652119	0.328584462877233	0.27325885432159	0.670499918916895
Merged-chr1-54475063-1	chr1	54474563	54475563	+	554.0	f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-36037.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	4.14343629935234	4.18776470579181	4.20112743439858	4.21433716910463	4.40954261793895	4.02486086470607	0.169554171127029	0.722765346060677	0.928947689973901
Merged-chr6-116345365-3	chr6	116344867	116345867	+	778.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302385, intron 2 of 6)	intron (NM_001302385, intron 2 of 6)	7345.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	3.35543059879496	3.49418367740279	3.72388961884955	3.69858077535394	3.39374574279744	3.53611955314002	0.0723958477271532	0.902736584295852	0.977585531827525
Merged-chr3-21953636-4	chr3	21953142	21954142	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123010.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.43811714992906	7.64086610351152	7.22275234454693	7.43439023338048	7.62604261752075	7.12566940367018	-0.0446790826949588	0.866673658500771	0.969114221403526
Merged-chr14-47362616-1	chr14	47362116	47363116	+	551.0	f1_c57bl6.idr	Intergenic	Intergenic	-11244.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.03999814978487	6.02350522876035	5.93182760107613	7.42108812135201	7.59199060017704	7.24021145922203	2.24178197071554	4.67222503832637e-17	1.93416169646299e-14
Merged-chr7-65644776-4	chr7	65644280	65645280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172310)	promoter-TSS (NM_172310)	-118.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	5.63631434275402	5.19012487131795	4.98384760283813	5.72843591727438	5.28735897077486	5.09048004141315	0.180275253500789	0.664886411423434	0.907721942545399
Merged-chr10-39413529-4	chr10	39413034	39414034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L1MB2|LINE|L1	43735.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.29179105563897	7.41588592694619	7.06901512713833	7.15534077308053	7.18774923118402	7.04609347558934	-0.209230193795231	0.392838188242027	0.771377884930667
Merged-chr17-24165093-4	chr17	24164564	24165564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1331.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	7.64025809644659	7.47321424039329	7.28982345978622	7.62054949879537	7.86951428191681	7.54375481316143	0.305444602292042	0.211885099872223	0.604324278153379
Merged-chr11-116488951-2	chr11	116488451	116489451	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026364, intron 1 of 9)	B2_Mm2|SINE|B2	1395.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	2.96844885354389	2.89057767278208	2.7920845795188	2.88894667303432	2.95460152262343	3.04729330978127	0.353969331269807	0.610041963731347	0.885428451824695
Merged-chr7-126738108-4	chr7	126737616	126738616	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21510.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.85863155495527	4.70949425878415	4.81860900166911	4.99652666876704	5.03956410275647	4.95860580529028	0.456261341927191	0.228992894654932	0.624456486692477
Merged-chr8-88648123-2	chr8	88647623	88648623	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	776.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	5.70177996908129	5.5929199135348	6.10507322142952	5.79832403382482	5.50972395960703	5.83903386089183	-0.164864862336901	0.630458600940523	0.894734411238057
Merged-chr18-38601254-5	chr18	38600778	38601778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011898)	promoter-TSS (NM_011898)	-10.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	5.30432417649197	5.07961328833736	4.76490791261531	5.27944828910402	4.88328278442625	4.74748514065877	-0.175859129542544	0.677150262611174	0.912699165331091
Merged-chr2-124624032-2	chr2	124623532	124624532	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	13736.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.93842452325939	5.32336045802083	5.34559143269858	5.15235097530634	5.17176842586228	5.46494755381713	0.103117281951997	0.783958827879254	0.947376685867648
Merged-chr1-77827572-1	chr1	77827072	77828072	+	765.0	f0_balb.idr	Intergenic	Intergenic	-312484.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	3.48340471838251	3.77484156949184	3.99595895749289	3.68945148731293	3.64217383946577	4.06310684166495	0.136682016623393	0.813210543115069	0.955933854959943
Merged-chr6-83658864-2	chr6	83658362	83659362	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2746.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.88749406346971	5.96531795276129	6.23203000782965	5.23835337106215	4.88760870834597	5.13673765595921	-1.80067548832629	2.75807746658074e-07	1.73727562330999e-05
Merged-chr11-96766555-3	chr11	96765999	96766999	+	909.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11056.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	7.68095317469273	7.64728505093417	7.57823542661905	7.34727004779145	7.57680495788632	7.50763020127766	-0.226516497204918	0.315624232136282	0.709892177526579
Merged-chr2-78050078-4	chr2	78049587	78050587	+	940.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	4.05530462714729	4.14377141333648	4.34246397544634	3.98088834366501	3.88701385227015	4.15207629048177	-0.511257725050277	0.299022790974314	0.695846413105059
Merged-chr1-152903322-4	chr1	152902825	152903825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-679.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	8.42534421715089	8.39390723173312	8.1098611093815	8.28211063460465	8.38145076158895	8.17256602116775	-0.0526800682410364	0.810708360976236	0.955095234253787
Merged-chr13-113794410-4	chr13	113793894	113794894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-114.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	7.38540727735114	7.44519648456334	7.006238416645	7.08451799234923	7.17267171990056	6.91964044474923	-0.348988980015531	0.178700852268684	0.560029396842779
Merged-chr10-76344427-2	chr10	76343927	76344927	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081419, intron 1 of 37)	RSINE1|SINE|B4	864.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	2.95774670267601	2.97168241028572	3.28164851970947	2.92785367756336	2.91326352515975	3.13867304904149	-0.370790439125581	0.590090738313818	0.877100187719802
Merged-chr5-77310415-2	chr5	77309922	77310922	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-62.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	5.8950265605877	5.94136811934703	6.50656228428503	5.93774389054316	6.22984798636279	6.18814307000119	-0.0107065994939677	0.974248946489366	0.994260005145451
Merged-chr4-32567431-2	chr4	32566973	32567973	+	599.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	L1MB8|LINE|L1	4189.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	5.1777597736859	5.5013759921154	5.80409181591756	5.12382018419773	5.25084667646517	5.55489752344719	-0.38691483187307	0.313727031828041	0.708132564679568
Merged-chr3-98026204-4	chr3	98025718	98026718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12680.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	8.51479476734086	8.61516153342192	8.06483275641972	7.95364980907224	8.32610083771057	7.96769423685827	-0.456390942183887	0.0756204602120376	0.36207086708129
Merged-chr7-127297319-4	chr7	127296815	127297815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 1 of 30)	intron (NM_001253873, intron 1 of 30)	1055.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	6.00037938323258	6.07689617517408	6.50721049285879	6.19871043836374	6.15219283843344	6.2219358003169	-0.0200945320102893	0.947357052134661	0.988008807662239
Merged-chr15-78597042-4	chr15	78596551	78597551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	4.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	7.23258208205795	7.27874315292354	7.31814449928003	7.49325577486993	7.72418704272454	7.28313574159762	0.364891117315641	0.135951666162031	0.49288772768116
Merged-chr7-109519073-4	chr7	109518559	109519559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011975)	promoter-TSS (NM_011975)	-136.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	8.22756626822099	8.62816523574049	8.34651361969189	8.29991949589184	8.41823779145603	8.37265354646254	-0.069519942491875	0.755424250930307	0.939315847504439
Merged-chr11-61642371-4	chr11	61641853	61642853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10968.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	3.56915141868225	3.62509955650286	3.71411391817539	3.43642399131059	3.5413176237782	3.63079250321426	-0.348006524835027	0.53464196020212	0.853068627162717
Merged-chr5-66151774-6	chr5	66151255	66152255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291226)	promoter-TSS (NM_001291226)	199.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	8.35118857804596	8.49013376178578	8.17774628347921	8.43916705817331	8.59901046952992	8.3671382507595	0.17399851247518	0.42447986109905	0.792697196836987
Merged-chr3-101601014-4	chr3	101600503	101601503	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	3704.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.17219734950599	6.96918510261652	6.98710613946194	7.3622917483697	7.23314435736239	7.20043464115272	0.329789628018012	0.169503112891455	0.546370768477266
Merged-chr5-124445358-4	chr5	124444868	124445868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-131.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	6.59175072074133	6.53368735400834	6.58714389591135	6.71309185221375	6.59266849135586	6.48772466606049	0.0556031229512216	0.830386457142346	0.960291707438312
Merged-chr13-32802639-4	chr13	32802094	32803094	+	978.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030215, exon 1 of 7)	exon (NM_030215, exon 1 of 7)	564.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	5.37604088983976	5.58659934006372	5.54103054126367	5.13957841714327	5.33063629039887	5.37287762311473	-0.429195102715455	0.210350235537046	0.602427996561115
Merged-chr10-60734692-2	chr10	60734192	60735192	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18090.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	6.28792187391143	6.16451759623401	6.48426353815217	6.38481368986207	6.32575917232185	6.11149050447252	-0.0397291928981217	0.889979709785177	0.974360328989611
Merged-chr19-37175300-4	chr19	37174800	37175800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290827, intron 1 of 10)	intron (NM_001290827, intron 1 of 10)	763.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	7.96273650090188	8.05674822992683	7.78169212377666	7.94985295723013	8.2713784894728	7.91323838511822	0.168067979555942	0.474691446814527	0.821664499521211
Merged-chr11-70615183-4	chr11	70614702	70615702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-692.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	5.56909707561081	5.54174285051359	5.86772466613798	5.44240184781225	5.5237955093063	5.43199275981367	-0.351449085474847	0.290039651705783	0.687724248806987
Merged-chr11-20231375-4	chr11	20230862	20231862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	18062.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	6.40874608378938	6.32186167621016	6.61409226079955	6.58475320094111	6.64156984327901	6.60743769344667	0.269987211962306	0.310041834362604	0.705630453428184
Merged-chr3-108050682-4	chr3	108050173	108051173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-5814.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	4.88440499730787	4.57267266334163	4.70150587322575	4.84310141698995	4.8608952155524	4.36681663592572	-0.0120661049688575	0.978135615763009	0.995056069639346
Merged-chr11-23357523-4	chr11	23357043	23358043	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 10 of 79)	intron (NM_001190401, intron 10 of 79)	50648.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	2.79060571219629	2.93928311993105	3.00105447876825	3.07937310206345	2.76824088022553	3.13058318173239	0.40591465872371	0.567968393386919	0.868453711583277
Merged-chr8-27175725-4	chr8	27175228	27176228	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	5.13302546370215	5.11755880630267	5.26472355279653	5.1567005900867	4.64303941874175	4.88738519513857	-0.557780150200485	0.158493144528945	0.530298699465564
Merged-chr10-7041178-4	chr10	7040694	7041694	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18009.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	6.89863779483266	6.82800620761257	7.06982363473976	6.63009773397142	6.72898118677524	6.96108584604476	-0.242226272454393	0.351861402155835	0.739503512176574
Merged-chr10-119028864-4	chr10	119028303	119029303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152787, exon 4 of 4)	non-coding (NR_152787, exon 4 of 4)	21696.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.81142150851138	5.44492318595823	5.23857390779235	5.57069875253316	5.23544151233062	5.36988268364988	-0.25780020427181	0.485147040976707	0.827362498348167
Merged-chr5-88636640-2	chr5	88636140	88637140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 11 of 13)	B2_Mm2|SINE|B2	38940.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	2.42277213441727	2.71124624041476	2.46826010327673	2.6457229007737	2.69941181502292	2.79759729577397	0.941422541498575	0.240748161895971	1
Merged-chr10-86884324-4	chr10	86883673	86884673	+	919.62854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	105168.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	6.73378700614523	6.9427202640045	6.70466743825934	7.15360067408934	7.46894746490147	7.07409267857873	0.682733755639041	0.00940768588732812	0.0964389216844645
Merged-chr8-25196594-4	chr8	25196115	25197115	+	897.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	4927.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	5.70734258419894	5.91750700128283	5.89164441320425	5.69997880177555	5.80951268559286	5.75496325348654	-0.14830372380618	0.629431296927332	0.894228388402321
Merged-chr17-57331677-3	chr17	57331113	57332113	+	902.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27073.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.55977012766806	4.24306518003869	4.62504326469511	4.79615044601217	4.62031712121971	4.65160220889713	0.514736292855255	0.234346249442682	0.630452522567377
Merged-chr11-118493810-4	chr11	118493299	118494299	+	744.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039168, intron 14 of 14)	intron (NM_001039168, intron 14 of 14)	16967.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.8874911168367	5.94477781112217	6.32578504353154	6.18353208931494	6.17114748899076	6.23272213591832	0.238844998646955	0.427085918339017	0.794033406170325
Merged-chr7-88280265-4	chr7	88279795	88280795	+	875.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2210.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.85696203817005	6.88781104266529	7.169763928831	7.1670411917508	7.59403045574185	7.29686531251628	0.601352135909668	0.0221988650612755	0.172984001125549
Merged-chr9-78476943-2	chr9	78476443	78477443	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4781.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.79481551690655	3.67457577343881	4.15322377873625	3.79464379997703	3.52170009550371	3.65406390096175	-0.726695135515849	0.19937193849189	0.587805905501548
Merged-chr17-31563184-2	chr17	31562684	31563684	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1589.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	4.09032729604894	4.44578720724773	4.57707799475935	4.40128964119561	4.68419288060281	4.48077380063908	0.386459965547055	0.405395644183566	0.780134157220244
Merged-chr14-76151319-2	chr14	76150819	76151819	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	40428.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	4.31314332098777	4.12995882931906	4.33200270079195	4.08658459553283	4.25470788600066	4.07905110212828	-0.29965837821756	0.526167401394575	0.849331441282684
Merged-chr3-25721706-3	chr3	25721190	25722190	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357095, intron 4 of 6)	intron (NM_001357095, intron 4 of 6)	432296.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	2.39207187411228	2.55874857551375	2.20417106613831	2.46148748494109	2.25564311248837	2.54842627232044	0.185305243597996	0.835231678402116	1
Merged-chr11-87025178-2	chr11	87024678	87025678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-31416.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.92741919736135	6.85400239552656	7.03350617889421	6.66249534901767	6.80221082079697	6.65660042137606	-0.345156626691486	0.169545105985171	0.546439877378084
Merged-chr4-123951845-4	chr4	123951346	123952346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34413.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.09193679990373	7.02500491085135	7.03290474009843	6.76289981392232	6.49410958805813	6.7015275293461	-0.619447165720103	0.0140819157765168	0.127334063022431
Merged-chr1-45902105-4	chr1	45901612	45902612	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	23482.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.28535587766997	5.46838531637668	5.63542707070175	5.336899649749	5.31379504237378	5.79382811410105	0.0461691830018557	0.898515104380982	0.976358095506735
Merged-chr18-88770666-4	chr18	88770173	88771173	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123534.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.62303873971142	3.87354921358141	3.41705364508387	3.62338621619031	3.50384992173295	3.71276249333888	-0.167495250987752	0.774557522105451	0.944477929413368
Merged-chr4-109000528-4	chr4	109000027	109001027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347169)	promoter-TSS (NM_001347169)	-128.0	NM_001346554	230598.0	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	7.99765032091998	8.13163487473906	7.70804684089582	7.88602595200146	7.7855041317567	7.70960122822417	-0.239443555757436	0.306019746843649	0.7020655990236
Merged-chr17-55878522-2	chr17	55878022	55879022	+	931.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	L1MC|LINE|L1	431.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	7.02777098249026	7.24821069114167	7.29305344343715	7.01727667321374	7.20016087724353	7.35035285526846	0.00170513732029407	0.994553260575629	0.998957752458935
Merged-chr18-36307298-2	chr18	36306798	36307798	+	655.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7197.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	4.05226461829844	3.99285173273182	3.93147584636204	3.95375643531983	3.75716105130194	4.00066381692829	-0.292605798763726	0.562748048190829	0.865755360453189
Merged-chr4-102517236-4	chr4	102516801	102517801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52759.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.76205286725348	3.87379160471473	4.15986707248031	6.14201728880343	6.06832634506597	6.45846596685845	6.7429732829325	1.81417572644879e-17	7.91939335921653e-15
Merged-chr14-33398269-4	chr14	33397783	33398783	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12741.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	5.49892171868751	5.256569204213	5.28165229992666	5.707804706077	5.68098759741772	5.34642279327122	0.467004623295916	0.176951179266505	0.557594294017865
Merged-chr12-80839167-4	chr12	80838652	80839652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	48620.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.82192154692074	6.5295498071501	6.27738459904693	6.78865219080516	7.00699394256137	6.55667520675283	0.367587294346248	0.21848434811055	0.612691362412513
Merged-chr7-127512409-4	chr7	127511908	127512908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024331, exon 1 of 1)	non-coding (NR_024331, exon 1 of 1)	425.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	8.67071700873734	8.50380030909781	8.43713102450386	8.5992044870385	8.7143589999612	8.50900231438938	0.096882454003021	0.642317581689777	0.899398873915991
Merged-chr14-45658213-4	chr14	45657725	45658725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-82.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	8.23194888196128	8.16302144356554	8.14682950048965	8.33180675589774	8.26367698999587	8.01651999242735	0.0476684527325986	0.825221031489393	0.958767231536338
Merged-chr10-87857811-2	chr10	87857311	87858311	+	905.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-454.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.68363891528674	5.93778382073821	5.78451088351463	5.91884938791783	5.96654830481382	5.65699822292822	0.0998460178742494	0.751555841143989	0.937886504040509
Merged-chr2-52741858-2	chr2	52741358	52742358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019667, intron 1 of 13)	intron (NM_019667, intron 1 of 13)	291.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	7.51107254947492	7.83986149426442	7.61447472122938	7.93426132136916	7.6335027108524	7.29654246012845	-0.0149961684067879	0.955389589542215	0.989763164889919
Merged-chr17-34761615-4	chr17	34761117	34762117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV2-int|LTR|ERVK	-17720.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	4.77022030291932	4.88095902685959	4.7189444434784	4.90918298213447	5.07392625274678	4.82574487946125	0.339410250791459	0.383906238159222	0.765090780435729
Merged-chr5-105556966-2	chr5	105556466	105557466	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	MIR|SINE|MIR	37495.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.96192669388565	4.98983091838836	5.01671352270757	4.42913443567173	4.67489198400909	4.50173705476432	-1.0140876474414	0.0130072522169774	0.120941718903817
Merged-chr18-75244995-3	chr18	75244403	75245403	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	ORR1F|LTR|ERVL-MaLR	52414.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.12218594574348	3.92383767320524	3.99698476839551	3.52972747517495	3.62610270712661	3.48176744911813	-1.5454587581701	0.00565447476321867	0.0668320363775425
Merged-chr14-7977672-4	chr14	7977168	7978168	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 4 of 7)	intron (NM_007870, intron 4 of 7)	16514.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	4.48944637663825	4.34172672939884	4.75257334850535	4.42972655704134	4.39365681079015	4.55359556825592	-0.181467562526414	0.681401095337782	0.914693263933768
Merged-chr5-121602067-4	chr5	121601560	121602560	+	773.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178799, intron 8 of 10)	intron (NM_178799, intron 8 of 10)	-8236.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	4.03268540108517	3.97994671112723	4.66086217607315	4.17753011271814	3.84282482027079	4.13543099653686	-0.546698546610024	0.312865443463128	0.707531331730172
Merged-chr10-81620436-4	chr10	81619936	81620936	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6886.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	2.67447417247941	2.78261708171984	2.93434134111831	2.90403036011647	2.99448222216265	3.37074999592575	1.51862514368908	0.0408218134990367	0.251970659825335
Merged-chr5-21129772-4	chr5	21129284	21130284	+	894.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46495.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.71124982058393	5.66633841673085	5.39967312433251	6.0116617615056	5.86654644824644	5.86087848868305	0.548550743530687	0.0843058430982225	0.384210789380924
Merged-chr11-116611412-2	chr11	116610912	116611912	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	CT-rich|Low_complexity|Low_complexity	12840.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.61165301640121	3.29969556048374	3.72518259676214	3.73303168615724	3.23710190634166	3.59120651211239	-0.0684337855438993	0.913252188043089	0.980560320145079
Merged-chr7-4073426-4	chr7	4072917	4073917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033568)	TTS (NR_033568)	-10213.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	5.60897352023612	5.50412542234099	5.76373670918167	5.86782446180327	5.63703729274282	5.69703044993222	0.211941523644405	0.508464979305813	0.839818423824339
Merged-chr12-85992643-4	chr12	85992147	85993147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86394.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	7.25948289101287	7.48911678771576	6.99026665417291	7.05003896650594	7.33502968172647	6.85426767652879	-0.246512369422733	0.377757256123075	0.760155399455595
Merged-chr4-132494759-4	chr4	132494273	132495273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 8 of 9)	intron (NM_144907, intron 8 of 9)	15683.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	7.12426262036742	7.07217499234988	6.57679659003289	6.9128050362623	6.93015223211183	6.5624107919844	-0.211028992562128	0.46699343726658	0.817728681977829
Merged-chr2-112367937-4	chr2	112367408	112368408	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026519, exon 1 of 5)	5' UTR (NM_026519, exon 1 of 5)	119.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	6.78817543446877	6.90744454701538	7.04906594228264	6.67633533689065	6.85922519900367	6.89412200064832	-0.156526271266153	0.539172008746134	0.855784546100871
Merged-chr1-91074313-2	chr1	91073813	91074813	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	20869.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.77256301268072	5.56444417711108	5.92033045720774	5.73072124186562	5.7032101896365	5.60239616110547	-0.123718541304569	0.699485500170743	0.920619136555148
Merged-chr5-122501508-5	chr5	122501034	122502034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110140, intron 1 of 19)	CpG	691.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	8.18836430070209	7.93193657363905	8.02790863874066	7.90193710324025	7.52605855061321	7.77138454179475	-0.450540409734472	0.0555119342101115	0.302994020075731
Merged-chr11-51805398-4	chr11	51804895	51805895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	41732.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	4.80710635341832	5.32350897541811	5.33618857244809	5.32255030830203	5.26457932513337	4.92246631219645	0.0292967440789043	0.942017283105308	0.987096691676235
Merged-chr3-36857739-4	chr3	36857263	36858263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5343.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	4.55267096326324	4.55232033768371	4.55763993964912	4.68810337861337	4.53268104174265	4.7424592137055	0.232129762499701	0.574277397317393	0.870582911329883
Merged-chr1-170706257-4	chr1	170705754	170706754	+	895.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	61722.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	3.45298593169579	3.29038582037546	3.42851709486525	3.02634020080213	3.32795321363711	3.15881102131925	-0.84065680741527	0.195485045757567	0.583133279106462
Merged-chr14-25469285-2	chr14	25468785	25469785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	10100.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.23521605256327	5.76502962157929	5.70891916831631	5.06039614985008	4.75228230515678	4.92211201480449	-1.37498048428671	0.000408083765662006	0.00892869681125538
Merged-chr10-84622294-4	chr10	84621812	84622812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027423)	promoter-TSS (NM_027423)	-125.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	6.5411563060678	6.666016492457	6.50133148330549	6.51457663029597	6.85228702375046	6.17272558343589	-0.0220165548599616	0.942240787956212	0.987119565429783
Merged-chr13-49298644-4	chr13	49298138	49299138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	10570.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	5.60664647718791	5.75217903290872	5.69609201337886	5.51532014653931	5.42049928241092	5.56952097876987	-0.355256542696159	0.266490357942556	0.664166899200562
Merged-chr13-52578544-9	chr13	52577861	52578861	+	941.6296390000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5076.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.86242360582493	6.69871909717588	7.07383119055466	6.65443975147717	6.78706150700271	6.91106037571276	-0.146629031331292	0.579502535400504	0.872557036763149
Merged-chr8-70213202-4	chr8	70212675	70213675	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-894.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	7.7715549362086	7.79542071569462	7.19905062865667	8.08152457537398	8.39107607285445	7.71352659341428	0.674882376821442	0.021254624908309	0.16808496198826
Merged-chr7-99980866-2	chr7	99980366	99981366	+	794.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175388)	promoter-TSS (NM_175388)	-408.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	5.31724283669836	4.89596324413599	5.0672507878766	5.249370011805	5.1791268515299	5.09714914123448	0.147616567443619	0.694259071631895	0.919210273513843
Merged-chr5-143521372-1	chr5	143520872	143521872	+	696.0	f1_balb.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	6621.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	4.24222513374596	4.57283149962792	4.5327398281971	4.48334460913661	4.51233990949898	4.29284908661485	-0.0399356161619817	0.929244265740236	0.983987942057929
Merged-chr8-70139225-4	chr8	70138719	70139719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309645)	promoter-TSS (NM_001309645)	-22.0	NM_001025589	19727.0	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	5.68981876161202	6.03788087698437	6.24780960945004	5.83498094187795	6.12468435487255	5.99670436159851	-0.0140362802839632	0.965627673004588	0.992002238254092
Merged-chr11-82780250-2	chr11	82779750	82780750	+	642.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291247)	promoter-TSS (NM_001291247)	792.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	5.67168320602489	5.47700987663841	6.05148185712097	6.22142753370159	6.26208177923809	6.00107290690839	0.755778254349893	0.0206504123921203	0.164805320378257
Merged-chr4-129064707-1	chr4	129064207	129065207	+	575.0	f0_c57.idr	intron (NM_029219, intron 1 of 8)	B1F|SINE|Alu	6436.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.44777227093842	4.74055956932961	5.04667846658925	5.10783394875507	4.66673387260632	5.17285711224688	0.521036710737153	0.239679962374864	0.63661666643112
Merged-chr10-21067340-4	chr10	21066834	21067834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177776, intron 4 of 6)	intron (NM_001177776, intron 4 of 6)	26514.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.3999805306579	3.75902754230027	3.67178486152393	3.4425624614956	3.60833955543875	3.69036304160154	-0.12797827984566	0.825499320233459	0.958821343666982
Merged-chr19-3986532-4	chr19	3986037	3987037	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302482)	promoter-TSS (NM_001302482)	-33.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	3.64853664087629	3.93210635864041	3.68908112331787	3.31913394877064	3.22415790445902	3.49180611405519	-1.59553272059739	0.00805388651161881	0.086462715001407
Merged-chr15-59037824-4	chr15	59037320	59038320	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	44206.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.4248215601913	5.23739914472559	5.16870900041942	5.29065704830166	5.23605250763503	5.1647510608954	-0.107595075257509	0.759459767375521	0.940443906894596
Merged-chr3-30595573-4	chr3	30595083	30596083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	4287.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	7.34202631520027	7.53821348707849	7.07278804723984	7.43315620977518	7.36615244483313	7.36309738121816	0.0681141054506138	0.783860444652412	0.947360539866523
Merged-chr14-27317362-3	chr14	27316865	27317865	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-18672.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.10176878441026	2.07539282089292	2.22623500059816	2.23485930466831	2.13782546094447	2.36513760306682	0.806347875182096	0.360359881717948	1
Merged-chr13-41466386-4	chr13	41465891	41466891	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20969.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.23654825180903	6.36910683191647	6.67659542406253	5.90641904640156	5.94276465258781	6.21488109959106	-0.702327725619226	0.021201497594785	0.167798158906945
Merged-chr2-3668112-2	chr2	3667612	3668612	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45346.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.24445852187	4.12022390247497	4.19352697509247	4.15436253840179	4.33299472136383	4.4758522374912	0.370311332972895	0.424045149946074	0.792397335906989
Merged-chr18-52750049-7	chr18	52749569	52750569	+	964.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17742.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	5.17455761005899	5.19154280879453	4.68708303325132	4.89500037813609	4.80490037685104	4.52831969997527	-0.636304132243509	0.133859208367511	0.489159288969865
Merged-chr1-152766550-4	chr1	152766037	152767037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346119)	promoter-TSS (NM_001346119)	-5.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	7.47899203474171	7.46061367608744	7.47399006119697	7.50798573881433	7.24670657984755	7.32826277175997	-0.157255845870102	0.495424577962597	0.832500902975543
Merged-chr19-16781711-3	chr19	16781203	16782203	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-770.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	5.09884077559533	5.2796415046287	5.22683148329434	5.22183964974001	5.29104385885026	5.32190151974071	0.150263025810423	0.666189437377861	0.908049448139768
Merged-chr7-99674991-3	chr7	99674489	99675489	+	829.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	20820.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	4.57359146584717	4.445607039108	4.25560217423208	4.13574141497439	4.1697493338583	4.07992752627939	-0.825264468109677	0.0760835399133698	0.363110266412448
Merged-chr12-73370529-2	chr12	73370029	73371029	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046013, intron 3 of 3)	intron (NR_046013, intron 3 of 3)	39034.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	2.68224803486678	2.83743303743281	2.59230361311199	2.78797703270988	3.18345762147055	3.04901598702371	1.52736216379352	0.0510198455198063	0.28783848663294
Merged-chr9-61907057-4	chr9	61906475	61907475	+	837.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7535.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	3.0021354280177	3.15921610386296	3.15100062116591	3.05443284607434	3.06550596561648	3.38523661021017	0.280805211941694	0.670535233492012	0.910029595108128
Merged-chr9-13829233-2	chr9	13828733	13829733	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 2 of 9)	intron (NM_176836, intron 2 of 9)	1517.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	3.74525360014781	3.6277104708761	3.85779526071917	3.88439218528914	4.03485963574303	3.92708790615408	0.67814464317165	0.191553994196857	0.578163985386394
Merged-chr13-94144206-4	chr13	94143710	94144710	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	86414.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.38318211305744	5.11008504419453	4.59436876504542	4.79074435551736	4.65879600800348	4.70806778706212	-0.797769878993404	0.0672213045942703	0.339073127587297
Merged-chr13-9560865-2	chr13	9560365	9561365	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 9 of 36)	intron (NM_001081426, intron 9 of 36)	202945.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.18728877292787	3.47044331511489	3.36697621283095	3.41111332172475	3.44678491741129	3.14021757392137	-0.00584135702084982	0.992671828292287	0.998523796268552
Merged-chr7-116094306-3	chr7	116093814	116094814	+	630.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019772, intron 1 of 4)	intron (NM_019772, intron 1 of 4)	934.0	NM_019772	56372.0	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	4.16018553207136	4.3317499114617	4.22007767842846	4.40335695037427	4.08498081899344	4.14661803192343	-0.0631096203581039	0.89382264371298	0.975280227461205
Merged-chr11-118245742-2	chr11	118245242	118246242	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	2850.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.12710922948588	5.28088125769432	4.68880335250409	5.5674250999417	5.51359938186595	5.42749253243815	0.859528064364854	0.0265133649285046	0.193519655172895
Merged-chr7-142400611-2	chr7	142400111	142401111	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-12741.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.61674706572561	4.58145244462661	4.26991582895294	4.98714577602767	4.95945758283784	5.14043512555	1.17857609227375	0.00517751833023462	0.0626263137901608
Merged-chr16-21916043-2	chr16	21915543	21916543	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 9 of 12)	Lx8|LINE|L1	24074.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	4.90661110636431	4.53642027008337	4.2743325566392	4.00900986325269	4.37328934959981	4.14490412822265	-1.06183853000488	0.0347834979954064	0.22872335239464
Merged-chr19-29488240-4	chr19	29487770	29488770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33717.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	8.50702131267933	8.29454708309735	8.16811144594937	8.28300825031303	8.49700867222651	7.95703749095918	-0.0860794011961004	0.727041628714255	0.930092984118427
Merged-chr7-25762572-2	chr7	25762072	25763072	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 17 of 19)	B1_Mur2|SINE|Alu	-7813.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	3.17069074989159	3.31089920821685	3.42487520566773	3.16048799401773	3.18975277748086	3.38915100456343	-0.231427815647824	0.711675449265636	0.92478339732604
Merged-chr1-152797490-4	chr1	152796988	152797988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2665.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	8.00216217989214	7.86438300735659	7.83576338865713	7.82888267372749	8.34044814086141	7.97154198673649	0.238743622160692	0.32874627759322	0.720905796252831
Merged-chr19-5924885-4	chr19	5924363	5925363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-47.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	6.93298932548036	7.00077824506394	7.23250734527444	6.98487810690316	7.28162608485384	7.42629460517133	0.281254183399924	0.282037603371167	0.679908771156903
Merged-chr10-93453371-4	chr10	93452852	93453852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313897)	promoter-TSS (NM_001313897)	-44.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	6.34150079677905	6.31860322654904	6.34588516896252	6.65548585822558	6.701591709477	6.51791849338827	0.482323472329893	0.0661154534819799	0.335574907242104
Merged-chr4-150488918-3	chr4	150488414	150489414	+	868.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163260.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	8.0192301526572	8.34611870143202	7.84840430528841	7.52596595118082	8.0317207737566	7.54371066079861	-0.514628442428539	0.0590801347009135	0.314644824497861
Merged-chr8-72161133-4	chr8	72160615	72161615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-85.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	7.79878088769197	7.94145505581774	7.69105653208057	7.88167646917944	8.05417661951959	7.85949869561201	0.171353905143664	0.442346755649543	0.803209439640776
Merged-chr15-101165797-4	chr15	101165293	101166293	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8279.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	3.61359602428633	3.87144100508104	3.68061460132339	3.60174224430256	3.990369228209	4.17873242375209	0.664988024723976	0.239894041799532	0.6368091379092
Merged-chr6-94222382-3	chr6	94221908	94222908	+	953.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	15034.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	4.45071396906622	4.0846478793539	3.55171311171888	3.28304904551938	3.18125392235457	3.37557558062688	-3.02650960728033	1.11955684580292e-05	0.000440871206935963
Merged-chr11-46774848-4	chr11	46774350	46775350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166631, intron 6 of 7)	intron (NM_001166631, intron 6 of 7)	23682.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	4.23915191833003	4.34945917800097	4.11646973743454	4.17905139495911	3.73438135622055	4.23156898477108	-0.522470024422503	0.309601308151256	0.705209571548034
Merged-chr16-23314934-4	chr16	23314448	23315448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	24478.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.53914035998239	7.52067228814424	7.272334002027	7.59908157503896	7.74784816504809	7.45394479248711	0.227761621888317	0.338935614117999	0.728919083443527
Merged-chr18-80206833-5	chr18	80206440	80207440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178604)	promoter-TSS (NM_178604)	73.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	8.52472077064266	8.91146593593566	8.46718950365345	8.16134219845486	8.37758922650588	8.26763423496636	-0.529834234448103	0.0228663760745247	0.176539470141001
Merged-chr5-96917068-4	chr5	96916566	96917566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4206.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.55370098991941	6.28475699642796	6.37717120990263	6.32896951702549	6.7892507151119	7.00453220941887	0.514739353828352	0.0917291713748594	0.403350467249342
Merged-chr11-94373344-2	chr11	94372844	94373844	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 6 of 30)	intron (NM_029600, intron 6 of 30)	19632.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.73104210284026	3.66259692964635	4.16677483374626	3.68602136745684	3.5050014341196	4.23283803023839	-0.0842412153871293	0.89004666555736	0.974370820420446
Merged-chr12-71002408-2	chr12	71001908	71002908	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	13415.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	4.66854098395875	4.5958239964881	4.60609077138931	5.16494733666971	5.0082901158519	5.33479156543121	1.19996278529796	0.00223756881128818	0.0336357112818072
Merged-chr9-120601652-4	chr9	120601138	120602138	+	834.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24307.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.73330781488072	3.94478786875994	3.7030324436099	3.1852412334037	3.34378392979335	3.50607034926162	-1.68567236575368	0.00554448182658231	0.0659098996620117
Merged-chr8-126589288-2	chr8	126588788	126589788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4148.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.504180032161	7.50366239271961	7.02613901496367	7.20018004299407	7.25017260266408	7.08421261993706	-0.28275246081992	0.275832571995619	0.673242318833586
Merged-chr2-156008012-4	chr2	156007470	156008470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145352)	promoter-TSS (NM_001145352)	7.0	NM_001145352	320095.0	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	5.32830981914464	5.25270723851547	5.33206457768214	5.11791309409746	5.19359540217874	5.02929981260836	-0.367955874180828	0.295706787081553	0.692631790059637
Merged-chr4-59805784-4	chr4	59805284	59806284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172468, exon 1 of 9)	5' UTR (NM_172468, exon 1 of 9)	134.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	7.241100932448	7.37767651005009	7.19405175730885	7.39799448103526	7.24763976727821	7.12601684950346	-0.0170408679825546	0.943177164000177	0.987335800407922
Merged-chr3-95673892-4	chr3	95673332	95674332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14085.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	8.0067056203729	7.59862561525214	7.77825548597578	7.98227296860247	8.15493727639864	7.71022331444799	0.231769712356161	0.35493270999579	0.741970720468217
Merged-chr1-78490313-4	chr1	78489811	78490811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1414.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	4.69189553892192	4.33567386260048	4.74296600866418	4.57439945769723	4.58306962297344	4.6159460530183	-0.0129863863211489	0.975998929814924	0.994572735300192
Merged-chr14-120172199-4	chr14	120171613	120172613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103556.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.24189179030223	4.54679621854668	4.52419582948674	4.03982913504814	4.16248957571496	4.66458087887983	-0.352815821840988	0.476620355636245	0.822673606567109
Merged-chr9-58631243-2	chr9	58630743	58631743	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 4 of 8)	B4A|SINE|B4	49003.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	5.17472827014548	5.16634104221226	5.27381694963783	5.33750920848848	5.19950539809607	5.45554968841837	0.250661631261568	0.472704259887698	0.820550293768681
Merged-chr7-63905962-2	chr7	63905462	63906462	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-10895.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	8.37510459303943	8.25390043303031	7.87376480781929	8.26934722776167	8.3990718367237	8.01828999107134	0.0731080268725044	0.767810880062139	0.942704220215291
Merged-chr2-6707413-3	chr2	6706893	6707893	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	14269.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.45927731629097	4.46694134943296	4.52031788038286	4.7025018143143	4.71450389814467	4.41134563906571	0.35823028121799	0.400152019667403	0.776372018141352
Merged-chr13-9099496-4	chr13	9099004	9100004	+	974.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5623.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.56086318242235	5.38540338505525	5.05293430093197	5.61856919473469	5.5668596406693	5.4607545371644	0.362619808033579	0.307439249461613	0.703580177816035
Merged-chr11-95712827-4	chr11	95712344	95713344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-90.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	7.82868501826083	7.24670624138547	7.79932707981839	7.97795063459994	7.461466847992	7.62048329651589	0.0800729921729262	0.778569372172184	0.945520893795831
Merged-chr8-10901151-4	chr8	10900617	10901617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102285, intron 2 of 2)	intron (NR_102285, intron 2 of 2)	1195.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	6.4102104345361	6.31055755159572	6.19819071573343	6.14683905526931	6.17903213194876	6.12919425433768	-0.2694635370488	0.332075827626136	0.723353110424764
Merged-chr4-132608414-4	chr4	132607911	132608911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30635.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	5.05274242384266	4.69795539223687	4.57579776779351	4.62672823049587	4.63405319168949	4.21102903979453	-0.667206219567832	0.148867713120946	0.51483658912136
Merged-chr2-165061791-4	chr2	165061287	165062287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	MER113|DNA|hAT-Charlie	6151.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	6.15996789118279	5.88669685277938	5.73504438715855	7.09287450231017	7.25005457262382	6.66540368119944	1.74298496210246	2.34347343846711e-08	1.95778853281096e-06
Merged-chr1-36261413-2	chr1	36260913	36261913	+	813.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	12012.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	4.23558546725388	4.20104543363131	4.53281785976692	4.56464988257172	4.20196069175542	4.88349975036739	0.61817644691763	0.204455792941014	0.594962496294183
Merged-chr19-10689096-4	chr19	10688610	10689610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	CpG	375.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	8.72158698908182	8.81564400327586	8.54203893574386	8.54289003673918	8.52412340977682	8.46082409016126	-0.264419757627171	0.197939605878888	0.586043439320662
Merged-chr4-53107056-2	chr4	53106556	53107556	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 7 of 50)	exon (NM_013454, exon 7 of 50)	52839.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.17283616060954	3.02584118626056	3.66235413838531	3.15312821979423	2.84475814656437	3.05004523088292	-1.23270617428169	0.0874236242036707	0.392021174969769
Merged-chr4-108577997-4	chr4	108577447	108578447	+	849.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172697, intron 1 of 9)	B1_Mur1|SINE|Alu	1389.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	5.32811830893728	4.94451368251789	4.77916290515808	5.19410281372463	5.41808650362622	4.9693786284035	0.347651092580553	0.39472456579933	0.772514857254462
Merged-chr7-19499510-2	chr7	19499010	19500010	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	8821.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	4.86881569744824	5.1176784892505	5.153464671714	5.20525077961591	5.34273379585782	5.31233663094941	0.497208341583226	0.169304284600985	0.546047169001851
Merged-chr11-78697978-4	chr11	78697462	78698462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-537.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	5.46770660663479	5.69582575047917	5.44547632272709	5.45612266941979	5.91471857068837	5.56849982524267	0.235447812802463	0.497586198742259	0.833756672867911
Merged-chr17-34186935-4	chr17	34186428	34187428	+	873.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	402.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	7.33645792388475	7.61032308598695	7.38291944074662	7.69146783467026	8.11142088622042	7.72679296307611	0.597028798724096	0.0174026427121232	0.147263205002578
Merged-chr9-123805466-2	chr9	123804966	123805966	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	B3|SINE|B2	-1011.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	3.3147789839061	3.6784256887341	3.54572400717622	3.61848152222095	3.52854764993919	3.7201699835999	0.341953438274616	0.557782032024668	0.864346083892814
Merged-chr5-135907624-3	chr5	135907198	135908198	+	978.4285890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018871)	TTS (NM_018871)	19779.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	7.46815234186601	7.4077668626644	7.08804246147475	6.76942608144345	6.34099267111731	6.32072982605905	-1.29344275211674	4.94652856733827e-06	0.000219398053854522
Merged-chr18-37933694-4	chr18	37933227	37934227	+	801.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	1749.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	5.416960185949	5.36051804676019	5.00718925498678	5.18093599986172	5.44464967017943	5.31687525494998	0.0738322118855812	0.839906042700578	0.962784121274377
Merged-chr5-34533213-4	chr5	34532710	34533710	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	7426.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.6396189617114	5.70859175908301	6.4743119158033	5.82691510207502	6.05170180771433	5.8978370521383	-0.0984457901958016	0.790913983781514	0.9496720073089
Merged-chr1-182528720-4	chr1	182528211	182529211	+	908.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11101.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.62339089421614	3.50690140706894	3.63315789728263	3.26804062315577	3.26667273527822	3.20110232089448	-1.32582508150579	0.0295463705377502	0.206785247654214
Merged-chr3-95993645-2	chr3	95993145	95994145	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	2194.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	7.39233927925321	7.26945769257222	7.03367699505531	7.35937384671758	7.41388382726846	7.2213757269064	0.134129502646536	0.583538386134997	0.874062789752135
Merged-chr5-53994822-2	chr5	53994322	53995322	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3701.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.73587798611613	3.49351789618519	3.60364155650312	3.67299018056076	3.58019758390381	3.77725369593023	0.200357960509253	0.71863135775431	0.927412960109508
Merged-chr19-34525541-2	chr19	34525041	34526041	+	799.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1933.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	8.02916410804591	8.17090990608386	7.49534407665627	8.26544222816247	8.28833123160149	7.79992848102115	0.2877249072836	0.305726423712908	0.701883343337569
Merged-chr18-75377634-1	chr18	75377134	75378134	+	575.0	f0_balb.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	10269.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	3.39761643248651	3.55097189198012	3.63354202401426	3.76873554867141	3.68532774904541	3.23657190710165	0.216055015353675	0.728605143789691	0.930478966998914
Merged-chr16-31754893-2	chr16	31754393	31755393	+	948.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252436, exon 1 of 23)	exon (NM_001252436, exon 1 of 23)	543.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	5.61897552159393	5.68372921030039	5.38691440898817	5.31246780843291	5.30235740496759	5.2213989712424	-0.573523745963274	0.0906463033612965	0.400578767331603
Merged-chr1-165763734-4	chr1	165763235	165764235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-23.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	8.43053804745632	8.67133917834119	8.12768589060409	8.43101136569656	8.65821378098165	8.07284882825951	-0.0250245043390602	0.924610528596247	0.983018921387056
Merged-chr5-5206255-3	chr5	5205768	5206768	+	697.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	59800.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.18408373165954	2.96509834718387	3.05812928400013	2.92116816853077	2.93284610202193	3.07167995392962	-0.459955723902714	0.495351731917814	0.832486253750024
Merged-chr7-142403033-2	chr7	142402533	142403533	+	793.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-15163.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.69730780221631	5.84780380540368	5.65386651022328	5.56059789717203	6.0372606130224	5.84657478038535	0.1742915280383	0.59642554233547	0.879911021114935
Merged-chr5-136953160-4	chr5	136952674	136953674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163243)	promoter-TSS (NM_001163243)	-101.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	5.91710017604957	6.00434470609139	6.45890272235711	6.10042564507038	6.36494638051074	5.85304491104733	-0.00531131816387987	0.987350091299866	0.997218304929226
Merged-chr11-85523819-3	chr11	85523313	85524313	+	802.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	170649.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	5.98466604972258	5.93393585892881	5.76089914613994	5.69037915814074	5.80861919994575	5.47733685704426	-0.403114116720201	0.206325174202434	0.596874633905926
Merged-chr16-44746295-4	chr16	44745790	44746790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356392)	promoter-TSS (NM_001356392)	73.0	NM_001356392	66067.0	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	6.57488462481896	6.79695669309086	6.67214368314901	6.53549495462959	6.9085683320967	6.80838333954508	0.122262556938249	0.650498323513609	0.902615790875857
Merged-chr10-40136188-4	chr10	40135682	40136682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	6072.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.31406624408632	6.24862361470006	6.30961868103622	6.28270291630381	6.20549377481743	5.92623967118538	-0.222709825224181	0.438310450802696	0.800485853918719
Merged-chr12-80463174-4	chr12	80462729	80463729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133798, exon 1 of 9)	5' UTR (NM_133798, exon 1 of 9)	134.0	NM_133798	97827.0	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	5.14864184499179	5.26150541679336	5.42730277105198	5.21982810422068	5.1242514087939	5.48945783180268	-0.00324062354380868	0.99284077043881	0.998596132080853
Merged-chr6-70791044-2	chr6	70790544	70791544	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1131.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	3.98554919528866	3.9517130131907	3.97979183018246	3.80986857452811	3.81810288975434	4.13947167768827	-0.153901454907662	0.762966908104046	0.941663714620562
Merged-chr8-26701210-1	chr8	26700710	26701710	+	798.0	f1_balb.idr	Intergenic	Intergenic	123213.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.56126448915301	4.42923131981271	4.81991283150241	5.46070325619558	5.13872107786101	4.99826374418751	1.36558652712387	0.000858001960027739	0.0160001405401139
Merged-chr4-59152062-2	chr4	59151452	59152452	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37598.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	4.09137099272851	4.07487569323683	4.02367755099196	4.10551024176794	3.93998465098795	4.23015388431415	0.065076341055299	0.893562497321399	0.975265071347118
Merged-chr11-84597139-4	chr11	84596664	84597664	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71504.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	6.051808945083	5.70784290254976	6.19159805757407	6.07450790181412	6.31810262987715	6.3841698306437	0.465953171022374	0.13563541766289	0.492341832783394
Merged-chr12-87388466-4	chr12	87387971	87388971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011479)	promoter-TSS (NM_011479)	-116.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	7.03578805022905	7.02432337393696	7.12809830380429	7.24330243076779	7.21662475383388	7.03031499343576	0.169364526215826	0.477644062418467	0.823296332305502
Merged-chr4-62730099-2	chr4	62729599	62730599	+	728.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	56125.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	2.9364487235929	3.24079018969838	3.37360719063298	3.14723089407409	2.99392024946992	3.17128612548933	-0.381709566312319	0.571661148176837	0.869547320544841
Merged-chr10-40069498-3	chr10	40068964	40069964	+	928.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-44196.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	6.806513360295	7.03842552173811	6.75824779449152	6.42391343281655	6.86769699797522	6.53100148356706	-0.383362631850948	0.174234195910984	0.553403610743454
Merged-chr15-96634690-2	chr15	96634190	96635190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	B1_Mus1|SINE|Alu	7272.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.73281174933148	4.92634168790919	5.33559444082326	4.67486333921226	4.59011748292067	4.94154213053648	-0.617589359300151	0.149408782016297	0.51586399831582
Merged-chr5-101909718-4	chr5	101909240	101910240	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 27 of 66)	intron (NM_172882, intron 27 of 66)	144610.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	3.30749158736001	3.38374597722123	3.45132856603752	3.5468667112637	3.33181825568031	3.23503446675122	0.0035914790609386	0.995287595457194	0.998961028701257
Merged-chr14-105164928-4	chr14	105164439	105165439	+	953.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	12388.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	5.26566655507484	5.04803777109411	4.7371368819248	5.23573715643969	5.14511987574204	5.21691530792325	0.30918847330992	0.423455595094568	0.792044534384498
Merged-chr16-30689506-3	chr16	30689015	30690015	+	953.244446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	89792.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.5169539369345	4.42937133071071	4.57859929086419	5.88587025081014	6.12534434544281	5.72347141381005	2.98746281407329	7.74817874466242e-15	2.07971115156732e-12
Merged-chr16-35888383-4	chr16	35887884	35888884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17002.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.7919515091577	6.07686540126427	6.09303531759205	6.20600000709796	6.20003566485325	6.15355081130144	0.338536619739668	0.248062156082146	0.645132606072547
Merged-chr8-84833419-1	chr8	84832919	84833919	+	775.0	f1_balb.idr	intron (NM_183358, intron 1 of 1)	intron (NM_183358, intron 1 of 1)	1137.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	3.15812937680421	2.8644120707725	3.32475704266001	2.95938301211191	2.71934159235241	3.06787837268311	-0.953476761460573	0.192314255682731	0.579367163874643
Merged-chr1-43811960-4	chr1	43811468	43812468	+	994.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	15740.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	6.2343369710911	6.53808609187628	6.66505628795122	6.11099928002558	6.56621080051915	6.44057383662735	-0.153760281444577	0.612068563049424	0.886477189156263
Merged-chr7-55909229-2	chr7	55908730	55909730	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	53263.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	5.7881064035855	5.47455568581778	5.94501307991934	5.91135588930851	6.00832318906556	6.3262847277655	0.608881216389827	0.0654727785878401	0.333761974939455
Merged-chr9-20888233-4	chr9	20887732	20888732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	57.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	8.0541298189106	8.44991707963737	7.97963435543913	8.27483518601282	8.54544426106571	7.9232992738387	0.136201292691828	0.612380063428929	0.886696834959703
Merged-chr10-81366939-2	chr10	81366439	81367439	+	743.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019757)	TTS (NM_019757)	-1119.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	4.75036681325262	4.77287851643623	4.69607123064936	4.45210630793321	4.33313669515834	4.79880125683126	-0.514687896778316	0.231617142432797	0.627581464311707
Merged-chr13-23574892-4	chr13	23574391	23575391	+	889.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	510.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	7.42022852167445	7.50681650005194	7.26885584344227	7.3138576439369	7.74908512988322	7.2039745261964	0.0735373699554027	0.781624517896106	0.946260244796369
Merged-chr13-8985083-4	chr13	8984587	8985587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 10 of 16)	intron (NM_027000, intron 10 of 16)	10925.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	5.88900537132494	5.58299978699848	5.52830893376446	6.81137514692282	7.01473232082681	6.19088525813405	1.74331860540463	4.77083925567456e-07	2.82140719819594e-05
Merged-chr18-36739991-4	chr18	36739489	36740489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4598.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	4.78866879014073	4.99917915401763	4.77866699295505	4.76698719182315	4.84353806060796	4.80584732264618	-0.130223831216004	0.739277882961939	0.934210875888137
Merged-chr9-44082775-4	chr9	44082292	44083292	+	775.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 2 of 12)	RMER15|LTR|ERVL	-2128.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	3.35132520154241	3.21682318407241	3.03336167504722	3.16088632728431	3.2987936168974	3.22790479076397	0.0801996298234501	0.901514927613461	0.977266678605068
Merged-chr19-41386385-9	chr19	41385869	41386869	+	927.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1299.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.79536991406401	5.75226951884614	5.79516265706784	5.72703502783591	5.93298253413386	5.4610902962117	-0.0764141324688383	0.814927062129181	0.956370078970016
Merged-chr7-140137653-4	chr7	140137139	140138139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199301)	promoter-TSS (NM_199301)	75.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	6.55884781607039	7.01694141246596	6.92782065183896	6.74543129044556	6.68354857002863	6.72205697381506	-0.206474517820115	0.447536438142602	0.806548958484392
Merged-chr2-79368090-2	chr2	79367590	79368590	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 3 of 12)	intron (NM_001048176, intron 3 of 12)	60898.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	3.39603208531164	3.44243819826051	3.22454250951152	3.46442532021116	3.58944072651261	3.63565821674237	0.742340542194142	0.2127187801559	0.605304269070836
Merged-chr12-51848606-1	chr12	51848106	51849106	+	617.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-19070.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.45834244349146	4.58652426189121	4.61640213507077	3.80972312418409	3.85206330368105	4.32296498783918	-1.52943184847567	0.00229728462678612	0.0343799387096439
Merged-chr1-156454584-1	chr1	156454084	156455084	+	744.666687	f0_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	19744.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.44686424779841	5.82718185055023	5.88966975120484	4.99990857967017	5.09077232641874	5.32846961135189	-1.15299851125091	0.00142861615776467	0.0238507811507389
Merged-chr1-106697678-4	chr1	106697117	106698117	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	16673.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	3.88920124726864	3.88692216058274	3.82776391670912	4.19351988629218	4.0349156981773	3.84545085729449	0.505051080688782	0.321154989412789	0.714758187580158
Merged-chr5-43276640-3	chr5	43276142	43277142	+	712.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 5 of 10)	intron (NM_001177379, intron 5 of 10)	-41288.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	2.69649111255805	2.72579186435516	2.71001378338137	3.20196910154591	2.67592124180186	2.97487439453987	1.27823011811392	0.0926318874703662	0.405434437569524
Merged-chr15-88746358-2	chr15	88745871	88746871	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-5340.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	5.10004911312242	5.030005088157	4.97879447488104	4.58539509394809	4.74175264261259	4.74465018841883	-0.77707122248639	0.0450965885218248	0.267913532609168
Merged-chr7-141549652-4	chr7	141549158	141550158	+	877.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9801.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	5.30856574064006	5.18241272265149	5.74824220791278	4.89317377207928	4.98060291387057	5.54479332837496	-0.529548515215673	0.203142791230393	0.593047970473348
Merged-chr4-154964280-7	chr4	154963782	154964782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172990, intron 1 of 18)	CpG	159.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	7.16260392818815	6.81734785309991	6.85397911081623	6.68024900756035	6.43262357080801	6.61329143940455	-0.599634528865498	0.0262698790133189	0.19243455347656
Merged-chr8-103970666-3	chr8	103970166	103971166	+	930.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-130959.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.26217521657864	4.00243341181567	3.71694703690761	4.00689020104006	4.06948905220656	4.10457860475035	0.107120247715611	0.838588703490329	0.962538562826178
Merged-chr1-74283958-2	chr1	74283458	74284458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190444, exon 2 of 11)	exon (NM_001190444, exon 2 of 11)	780.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	5.47429007367709	4.87511288240357	5.11705262540942	5.46447456883453	5.20306193842797	4.83699839631481	0.0340576230342943	0.935648504332093	0.985887226793611
Merged-chr9-14188084-3	chr9	14187481	14188481	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88320.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	3.17502596359994	3.38008431573831	3.55022682044523	3.36002442138431	3.34957754544549	3.40961958704213	0.00303980845327774	0.996031821077577	0.998961028701257
Merged-chr9-13540155-1	chr9	13539655	13540655	+	799.5	f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-79834.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.28354999609233	3.62283232876667	3.45357654807771	3.54679917847847	3.63186696320956	3.57980100654653	0.447531185522023	0.445861248777605	0.805424390221004
Merged-chr9-5311514-2	chr9	5311014	5312014	+	957.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	2665.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	4.53740993320917	4.63645119326437	4.53692602622174	4.40125463001488	4.36776783124629	4.19585494764965	-0.614587582372011	0.160585439187448	0.533285170175175
Merged-chr7-35802938-4	chr7	35802428	35803428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177739)	promoter-TSS (NM_177739)	61.0	NM_177739	668501.0	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	4.33177337474912	4.3684562345798	4.16666402961665	5.20296488125723	4.50086636182696	4.07491800341225	0.945057236469338	0.0839247753865489	0.383461243773761
Merged-chr19-47531387-3	chr19	47530874	47531874	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 2 of 9)	intron (NM_175360, intron 2 of 9)	5745.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	4.37216269589444	4.28475897703741	4.79491132487718	4.33962206742821	4.01673847217281	4.57369490091993	-0.447249410130013	0.368410500462887	0.753380524534667
Merged-chr16-44029452-4	chr16	44028961	44029961	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 4 of 16)	intron (NM_001359085, intron 4 of 16)	-1516.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	6.06000897203595	5.60661600510356	5.42733753736117	6.37711801583068	6.62932038981344	6.03579885369548	1.09285780238302	0.00221251224474925	0.0333512171849811
Merged-chr11-105363065-4	chr11	105362559	105363559	+	973.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172568, intron 11 of 11)	CpG	70413.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	3.27148583728482	3.5488550953211	3.41305263733812	3.51081171364354	3.15441336344139	3.06194809187858	-0.616904342858517	0.351372457719072	0.739266474591224
Merged-chr1-37562152-4	chr1	37561643	37562643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21127.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	5.51124220643645	5.46786738241399	5.68535417029503	5.57867639236651	5.37040248943683	5.81848668882727	0.0708494739823941	0.835461880918589	0.96170894730835
Merged-chr9-46012724-4	chr9	46012200	46013200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027498)	promoter-TSS (NM_027498)	-10.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	7.72235471972061	7.73383580698381	7.11596393355626	7.26039889610268	6.94538818641457	6.96393376417359	-0.739085882924606	0.00882701514376006	0.0923059288779675
Merged-chr11-107013810-1	chr11	107013310	107014310	+	684.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-14285.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	2.925398585484	3.04879490134521	3.61598737051983	2.85116605060062	3.06595478640075	3.34505302834701	-0.528924940030947	0.481129636852609	0.824953741430059
Merged-chr4-149793371-4	chr4	149792863	149793863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19096.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	6.24082178325381	6.39179155705229	6.20399906876475	6.87341021340287	6.88875906515176	6.66274419188997	0.849558309062719	0.00145959470660513	0.0242270010666666
Merged-chr10-21994618-4	chr10	21994098	21995098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011361)	promoter-TSS (NM_011361)	-68.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.92392708527996	7.74260167229643	7.68298832588178	7.76535741026768	7.72504777889976	7.74842104487969	-0.065090907336299	0.767230020417212	0.942573703853445
Merged-chr16-10972612-1	chr16	10972112	10973112	+	579.0	f0_balb.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	20509.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.52750133302713	4.3365845598403	4.95875856184806	4.34174915116559	4.44557499716151	4.75451929798286	-0.253113133042729	0.590854704091272	0.877301111216348
Merged-chr4-43964704-4	chr4	43964213	43965213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7011.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	6.04477608497495	5.34396743373951	5.50130003055837	5.92179069382915	5.83852675944867	6.3263778165319	0.644469114169214	0.0864275674926011	0.389422485294003
Merged-chr13-37779530-4	chr13	37779051	37780051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46487.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.0760242984424	7.07873390235226	7.07257181167546	7.12905136259165	7.09150276269516	6.71872014677266	-0.110409565252085	0.665348523648801	0.907787360308422
Merged-chr10-60283721-4	chr10	60283234	60284234	+	874.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-727.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.346141213655	7.64587958732083	7.78963570447173	7.68693881312305	8.16984234235248	7.87033801082987	0.470025133795908	0.0705528772021095	0.34813073151629
Merged-chr8-11001350-4	chr8	11000838	11001838	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-6512.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	2.78528670798423	2.97871883839677	2.96199057030017	2.66718505093461	2.47270141095552	2.73379912802693	-1.60668771434262	0.0403782275954072	0.250333194324632
Merged-chr5-34973513-2	chr5	34973013	34974013	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173402, intron 2 of 16)	L1MB3|LINE|L1	24065.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	4.55419474763604	4.60899940603013	4.50430459413409	5.3055612833598	5.21607051961029	5.1231086521161	1.46299794987185	0.000163657267353126	0.00426082412450528
Merged-chr7-117486661-4	chr7	117486171	117487171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	105692.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	5.33195638205667	5.81747207840534	5.80635860110526	5.00309276994907	4.78303129930618	5.57646169000359	-1.00685331125086	0.0159829867632278	0.138807260473297
Merged-chr2-90458257-2	chr2	90457757	90458757	+	913.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 10 of 26)	exon (NM_001135657, exon 10 of 26)	20917.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.23837466339207	2.24270121522933	2.45565161574314	2.4269469745027	2.14074146444713	2.3382038131312	-0.0475446217557928	0.956248075371941	1
Merged-chr2-73055049-2	chr2	73054549	73055549	+	993.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74603.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.10797897391997	5.8471360330036	6.12945242871441	6.00151437121745	6.27235066585002	6.36546724775654	0.323849303209878	0.283593200982921	0.681376161050487
Merged-chr5-103752955-4	chr5	103752470	103753470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-1192.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	8.00080864339781	8.46764505183399	8.05064792510307	8.1555496379094	8.7740194278081	8.28342678957627	0.341711443131709	0.211984128489083	0.604420229358776
Merged-chr8-113643660-4	chr8	113643168	113644168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173015, exon 5 of 5)	3' UTR (NM_173015, exon 5 of 5)	455.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	4.59739317420329	4.66992429581308	4.94962205366911	4.87422222791448	4.65872129907701	4.80061889018971	0.0917887194050261	0.822576197695458	0.958132813961117
Merged-chr7-128739131-2	chr7	128738631	128739631	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	1298.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	5.50676689228175	5.53151753783406	5.62616186023013	5.95467476101762	6.18614078150667	5.8475813251332	0.835162595472598	0.00767083280007656	0.0835219387109095
Merged-chr4-32531636-3	chr4	32531141	32532141	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	40021.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	3.70809434724753	3.72373817606572	3.77516496505305	3.31308132897786	3.50981669209272	3.58934088112411	-0.924422768890489	0.105936561594354	0.43446438704272
Merged-chr2-14056177-4	chr2	14055680	14056680	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013935)	promoter-TSS (NM_013935)	-145.0	NM_013935	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	3.20635828841896	3.37309252298746	3.46465779944691	3.10171732936887	2.95059019226886	3.09035151786542	-1.32671009027732	0.0438618185987189	0.263417842075944
Merged-chr10-42503605-2	chr10	42503105	42504105	+	803.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	B1_Mus2|SINE|Alu	1551.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	6.31466898526436	6.36197731083767	6.55292495274311	6.3950394122537	6.86494105699246	6.50798000365293	0.335537350201438	0.247006072474381	0.644045601901006
Merged-chr13-62294555-3	chr13	62294062	62295062	+	879.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	88612.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	2.805552936655	3.20372482156294	2.89427559406982	2.49427672523476	2.45747047397981	2.65215336410122	-2.75377873573451	0.00162706324770644	0.0263780543383431
Merged-chr17-66107071-4	chr17	66106592	66107592	+	897.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	2.15767092457071	2.16660899945875	2.07144108058014	2.46607164458932	2.24918165449844	2.42060859010746	1.73427595141785	0.0581515798794259	1
Merged-chr12-86898227-2	chr12	86897727	86898727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13413.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.45230888692294	4.99251592506328	5.25624064893741	5.21967378585096	5.23809241268347	5.25616089420435	-0.0207574317293741	0.954963319045367	0.989683851514547
Merged-chr10-22747156-4	chr10	22746652	22747652	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15705.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	4.21504248984931	3.89503172596205	4.23898641886385	3.59851849490539	3.36375793856495	3.63645430392301	-1.99869271522088	0.00049203101806726	0.0103752957301928
Merged-chr10-13193001-7	chr10	13192487	13193487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 1 of 10)	CpG	150.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	9.17375026808673	9.39630177518112	8.95665727552149	9.00940248591613	9.39714882133026	8.92810225180847	-0.0795224482072518	0.74179757712151	0.934976596408911
Merged-chr16-20000419-2	chr16	19999919	20000919	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-17370.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.50328517386051	3.55890998770783	3.80857685378927	3.64335557548442	3.59892143250843	4.14221855847088	0.610742228860401	0.295722009586322	0.692631790059637
Merged-chr4-152009778-4	chr4	152009333	152010333	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033352, exon 1 of 4)	exon (NM_001033352, exon 1 of 4)	942.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	7.88777766767945	8.42498436894668	7.5118723084792	7.41354025062808	7.51667409813519	7.32239708811148	-0.840843165592861	0.00434440967154258	0.055383735245858
Merged-chr16-91835243-2	chr16	91834743	91835743	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	(CA)n|Simple_repeat|Simple_repeat	96387.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.13392069293642	4.85899947608795	5.2388198304292	5.20829935536007	5.01257187560126	5.1088772315696	0.065332650132234	0.862294685450173	0.967996224966109
Merged-chr7-122219529-4	chr7	122218977	122219977	+	904.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027363)	promoter-TSS (NM_027363)	-19.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	5.97271630839831	5.64339121569817	6.27371788701152	6.1642390792316	6.08932463217462	6.13545872692508	0.263260967146615	0.413275169888113	0.784894557108785
Merged-chr5-30888058-4	chr5	30887567	30888567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_122117)	promoter-TSS (NR_122117)	-785.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	6.12132878230313	6.25543817064232	6.31027966105218	6.44074505341611	6.61862905499194	6.35069943969405	0.421097606109545	0.128755717539279	0.479799601167289
Merged-chr5-138195700-4	chr5	138195200	138196200	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177878)	TTS (NM_177878)	1386.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	6.87616721368285	6.75219676737852	6.63043178539617	6.89772124684494	7.09453550402881	6.67253471311428	0.230527388613164	0.38994817781091	0.769401696657453
Merged-chr1-127271361-4	chr1	127270866	127271866	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	66380.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.25922487483289	6.36329495895936	6.19176878976007	6.20048778558299	6.24200999651994	6.3127983349419	-0.0476411892630322	0.862638315957139	0.968083292979043
Merged-chr2-144248183-2	chr2	144247683	144248683	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	18019.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	5.48751035164526	5.47717604194242	5.53912048906301	5.44780835772182	5.51077744969968	5.48745001122049	-0.030050163596069	0.925985600105133	0.983305773102619
Merged-chr12-26451399-3	chr12	26450910	26451910	+	669.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	5042.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	4.11083094957646	4.10066152705623	4.42759390505254	4.26025751853754	4.38490400442767	4.04053630092081	0.091751497592483	0.850168130703508	0.964823340142195
Merged-chr10-53616110-4	chr10	53615632	53616632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	14307.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	7.00887838904894	7.17067635145927	6.89104184355764	7.16547265940181	7.38151432736225	6.67282194118071	0.131282696089678	0.650844654934131	0.902681635626215
Merged-chr3-54681777-4	chr3	54681259	54682259	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-11056.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	4.61046313471897	4.61735323948509	4.49526655297528	4.38565706540781	4.76501306601691	4.5626224060425	0.0237236069591349	0.956143010486367	0.989807313282509
Merged-chr19-34551124-2	chr19	34550624	34551624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	36.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	5.13873361122101	4.96832232118642	5.25987620340417	5.73557772820684	5.7401908624658	5.32461242684205	0.991699679855535	0.00549385516471267	0.0654824094750626
Merged-chr11-94704116-4	chr11	94703611	94704611	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001007584, exon 1 of 2)	exon (NM_001007584, exon 1 of 2)	388.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	4.00248001288868	3.55487139992178	3.90339476444511	3.73001275674687	3.74838143815292	3.71990793642245	-0.320711711712468	0.562185085020871	0.86560636450104
Merged-chr5-32785713-4	chr5	32785208	32786208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177298)	promoter-TSS (NM_177298)	-82.0	NM_177298	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.39278273414357	5.43309446829992	5.42235508057519	5.8360427569467	5.71091525277616	5.48611407853201	0.52163906988684	0.112085487540415	0.447159670482948
Merged-chr5-135955507-1	chr5	135955007	135956007	+	589.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	18969.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	3.21917672436913	3.36364127556619	3.4298937692411	2.91958046253527	3.07185425260705	3.28689201155116	-1.02792761973868	0.12208530494186	0.467378608401301
Merged-chr15-99387122-2	chr15	99386622	99387622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-5825.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	2.66654459316342	2.65100839972155	2.72097492605386	2.5477941835022	2.51601742588112	2.60806649549561	-0.709146989703553	0.350588621272967	1
Merged-chr9-106246492-2	chr9	106245994	106246994	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 2 of 10)	intron (NM_020559, intron 2 of 10)	1236.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	2.87898948631975	2.89359244452443	2.85924420736665	3.13389100837111	2.80984816029987	2.99452646655488	0.502837376940908	0.472742293944621	0.820550293768681
Merged-chr12-84752235-4	chr12	84751754	84752754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20858.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	8.31495522274129	8.79398861085329	8.2282676295599	8.39948542187052	8.76790054622377	8.0074297491397	-0.0535557573077951	0.852872197147318	0.965546660322955
Merged-chr1-91460360-2	chr1	91459860	91460860	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1032.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	3.47339946358316	3.48746909491976	3.24709796139268	3.84614809608257	3.4318675893755	3.44423313578376	0.64087020972546	0.300446574002288	0.697298854445564
Merged-chr6-134263075-4	chr6	134262557	134263557	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007961, exon 7 of 8)	exon (NM_007961, exon 7 of 8)	-133272.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.05622374127762	7.04227885500264	6.96167545552311	6.38010957545095	6.26639298502391	6.24469940234921	-1.14597180097109	7.44329071065141e-06	0.000311226800729589
Merged-chr2-163575499-4	chr2	163574946	163575946	+	953.2976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26868.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	5.27047259678756	4.90346740712298	4.82341403536598	4.50026799572552	4.39381805439957	4.42306126164623	-1.36652934948525	0.00130899263899935	0.0222419153575369
Merged-chr11-60728409-4	chr11	60727913	60728913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039559)	promoter-TSS (NR_039559)	15.0	NM_001009927	237781.0	Mm.339760	NM_001009927	ENSMUSG00000018599	Mief2	AI482195|Gm11|Smcr7	mitochondrial elongation factor 2	protein-coding	6.93002554449679	7.16090359871612	7.14129322965215	6.93759027164361	7.29320153644845	7.03285822330164	0.0374873817174852	0.884035990192601	0.973466734537782
Merged-chr9-66909429-1	chr9	66908929	66909929	+	643.0	f0_balb.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	10276.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.56174347723621	5.59714728941531	5.37225438095039	5.2775113396987	5.1775029581409	5.37409234928991	-0.490909062094884	0.148267680037947	0.513762236213799
Merged-chr15-95789723-4	chr15	95789211	95790211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.83994856846694	6.79941590142635	6.33319844309344	7.13752280237482	7.23104210173826	6.45717532276831	0.478347742632238	0.143113162510311	0.505011027402799
Merged-chr2-132598295-4	chr2	132597803	132598803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033469, exon 1 of 4)	non-coding (NR_033469, exon 1 of 4)	107.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	8.46328193846899	8.50938850738781	8.17487039896799	7.84084330393558	8.22372846987926	8.10727189589057	-0.457029793772087	0.05188897050819	0.290863477367655
Merged-chr16-31188241-4	chr16	31187734	31188734	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	MER45A|DNA|hAT-Tip100	13004.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	4.25334483674465	4.20701809658609	3.87598746611229	4.39157304403205	4.32305372820671	3.94912395330326	0.306495404926096	0.550641233588908	0.860709619458349
Merged-chr18-80704018-2	chr18	80703520	80704520	+	793.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	4153.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.70906607663536	5.71003404633912	5.3851121692366	5.10572786600826	5.24854268857151	5.69896731337949	-0.485724326276702	0.188587929616655	0.574210496470384
Merged-chr8-86623998-4	chr8	86623479	86624479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025827)	promoter-TSS (NM_025827)	-64.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	6.79653891829861	7.11172370861685	6.9751353113544	6.66532136442317	6.75053109478864	6.69416124662102	-0.407730979276481	0.111907825703927	0.446815084509229
Merged-chr9-64960849-4	chr9	64960350	64961350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	18.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	6.39308319968131	6.1511061556156	6.38315834908483	6.26760429313952	6.23763549902127	6.36835481752414	-0.0364776960013383	0.895972992018039	0.97569173539301
Merged-chr17-34153082-4	chr17	34152559	34153559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010387)	promoter-TSS (NM_010387)	-132.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	4.69277734587618	5.13366071688407	5.09434940498967	6.29354238063694	6.79882175338119	6.25248292388373	2.7494627486389	1.0854905639232e-13	2.48135985832203e-11
Merged-chr17-5276084-4	chr17	5275584	5276584	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	142683.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.3934741282021	4.24748634411808	4.39912979870474	4.30854598254575	4.00801449547416	4.42411567907215	-0.26536421593544	0.573701425893868	0.870292198441646
Merged-chr14-54383943-1	chr14	54383443	54384443	+	841.0	f0_balb.idr	intron (NM_011405, intron 4 of 11)	B4A|SINE|B4	23102.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	7.10468852477821	7.09204198941269	7.07953953680646	6.6160366788475	6.90411577785425	6.27756279007911	-0.693776343630822	0.0151469708063563	0.13356815884435
Merged-chr17-26576990-4	chr17	26576496	26577496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	MIRc|SINE|MIR	15484.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.41638464913072	5.13190506433107	4.86733723098122	4.83947099776285	4.54921141785607	4.68891306479107	-1.04260017643315	0.0113788815068088	0.110157859930977
Merged-chr10-83198574-4	chr10	83198062	83199062	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139255.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	2.94067213076139	2.96658549381521	2.91520311574026	2.8281483796818	2.57270497970626	2.8670496200993	-0.957971659984106	0.195654575080694	0.583395666913835
Merged-chr4-41314353-4	chr4	41313894	41314894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 1 of 8)	CpG	507.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	7.87230979963097	8.07896696216712	7.94929592694253	7.88460723746003	8.0587028627905	8.21229202689485	0.120854680611128	0.590119938096309	0.877100187719802
Merged-chr11-50202460-2	chr11	50201960	50202960	+	675.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011018, exon 7 of 8)	exon (NM_011018, exon 7 of 8)	8360.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	2.66754244741071	2.45352566573489	2.69668043199301	2.76424372013224	2.48260097317427	2.88963380049897	0.599253178736012	0.450396275901923	0.808346778077892
Merged-chr4-129625299-5	chr4	129624857	129625857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199695)	TTS (NM_001199695)	-1449.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	6.52301868771989	6.51322301904361	6.63331942692413	7.03860277976502	7.28852574111486	6.97978916510133	0.874735383191818	0.000627283377743193	0.0125490184782461
Merged-chr6-134947604-4	chr6	134947119	134948119	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	18527.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	3.50041739714417	3.09872812799972	3.28242755876543	3.61738522657495	3.23673036068123	3.52346562927659	0.607583205063949	0.346523719039874	0.734711689104559
Merged-chr5-92205457-1	chr5	92204957	92205957	+	604.0	f0_balb.idr	Intergenic	Intergenic	9951.0	NR_033483	57425.0	Mm.2548	NM_020562	ENSMUSG00000029409	U90926	-	cDNA sequence U90926	ncRNA	2.54289624393914	2.50495948259236	2.36174109071465	2.61790404681945	2.57314273620158	2.93754877667858	1.36068728303337	0.100647663616265	1
Merged-chr11-116075411-2	chr11	116074911	116075911	+	802.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 7 of 32)	(T)n|Simple_repeat|Simple_repeat	2550.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	2.34025689263747	2.27370588594793	2.57838851487246	2.3510896370509	2.35465670829015	2.4050688728215	-0.185256278220109	0.823676520026516	1
Merged-chr4-139267365-2	chr4	139266865	139267865	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 4 of 9)	intron (NM_001037761, intron 4 of 9)	43343.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	2.68603256312561	2.44062543695796	2.74252746237317	2.65989184758515	2.50007480366966	2.81544070531825	0.183946739674295	0.815443655018154	0.956370078970016
Merged-chr15-58755963-2	chr15	58755463	58756463	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	67464.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.59591922279039	5.31756969364575	5.23322140324571	5.4642448193539	5.57671213882582	5.04261730570547	-0.00554655039756933	0.988223705486763	0.99731652667245
Merged-chr2-27732999-3	chr2	27732499	27733499	+	891.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22416.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.10811664420872	6.39010714301279	6.44242822575026	6.29838962198077	6.25554440541426	6.39355683479353	-0.00674705666257619	0.981007547947277	0.995657460731624
Merged-chr16-33916179-2	chr16	33915679	33916679	+	988.785706	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	50859.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.15746411255745	4.76044098997153	5.45725991368105	5.04977058011863	4.5886140313563	5.46693036692496	-0.150259698081757	0.747115452004267	0.936552918354416
Merged-chr11-120101184-4	chr11	120100640	120101640	+	825.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110242)	TTS (NM_001110242)	2206.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	3.0296995631531	2.74139874936106	3.00686976199628	2.90520078149381	2.75230840267811	2.90134628833845	-0.385921410818504	0.589762005417367	0.876999741964957
Merged-chr7-127557898-4	chr7	127557390	127558390	+	868.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304266, intron 33 of 33)	intron (NM_001304266, intron 33 of 33)	-3333.0	NM_001304267	105180375.0	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	3.61915904466368	3.28658098380853	3.60713702491132	3.42124619162051	3.44550732448409	3.67656274597844	0.0136735297144013	0.981718778405521	0.995816848879271
Merged-chr8-70697834-2	chr8	70697334	70698334	+	758.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010592)	promoter-TSS (NM_010592)	95.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	6.61053035991109	6.47890145953979	6.40640290263358	6.37976883426097	6.40440652684875	6.11048359506712	-0.310288965965394	0.265573121653555	0.663338885916879
Merged-chr2-102831688-4	chr2	102831170	102832170	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 9 of 13)	intron (NM_001039150, intron 9 of 13)	69995.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.53777463602931	3.6564217828631	3.91489946145957	3.49073705720657	3.54993795267785	3.84430221872192	-0.254666731603815	0.657504749266539	0.904798742244684
Merged-chr11-19018212-4	chr11	19017730	19018730	+	919.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001193271, exon 1 of 13)	exon (NM_001193271, exon 1 of 13)	739.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	5.46537580465572	5.86678564111199	5.5983037151628	5.88319271898411	5.7934007060096	6.0529840721075	0.443679018910246	0.175750495583974	0.555774586970482
Merged-chr19-7495522-4	chr19	7495021	7496021	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	1083.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	6.85471498820162	7.13346216403419	6.7761206115234	6.84849922895171	7.24727969013261	7.05067727561196	0.19285064170318	0.475404118437585	0.821929811663097
Merged-chr10-38623639-2	chr10	38623139	38624139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198140.0	NM_001177783	215919.0	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	3.52481555246735	3.56568835268875	3.67541654952436	3.56822170589934	3.74022329769906	3.5314667634137	0.130996905457659	0.815219447013467	0.956370078970016
Merged-chr2-3323907-2	chr2	3323407	3324407	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 11 of 13)	Charlie1|DNA|hAT-Charlie	8721.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	4.59022164723963	4.75812458498104	4.8009974597556	4.79373928726708	4.98031126841288	4.53856949118709	0.186601891029792	0.6551922481056	0.904167065613807
Merged-chr6-121230073-4	chr6	121229571	121230571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-15835.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	3.79983172566593	3.86208188944735	4.21009185072845	4.00099820110087	4.04802002330358	4.19089397026911	0.355150458184898	0.485845709242148	0.827573679263522
Merged-chr3-20304956-4	chr3	20304456	20305456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29223.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	5.16307522189575	5.11581972861952	5.64911824570569	5.21333067682632	5.32354585215801	5.39067516858286	-0.0161043105931748	0.965600008676175	0.991995030766812
Merged-chr11-116842905-4	chr11	116842283	116843283	+	995.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028865)	promoter-TSS (NM_028865)	666.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	7.63656475305208	7.78260367885228	7.70907454356848	7.47985561787732	7.65472771719218	7.67720657738541	-0.151924119515733	0.495528350485405	0.832508543510954
Merged-chr14-57746716-4	chr14	57746219	57747219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	-596.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	6.82879636860435	7.14299775550183	6.83063686468521	7.06423622453031	7.01377103050261	6.6792823302213	-0.0153374647665965	0.95479711836163	0.98964546481769
Merged-chr17-71286549-2	chr17	71286049	71287049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	L1MC1|LINE|L1	24462.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.28813749148315	7.52791375871042	7.41596460521164	6.82086504516844	6.70166756892954	6.51386525761126	-1.0981526876177	1.46309909413552e-05	0.000555897485958121
Merged-chr8-72570968-5	chr8	72570501	72571501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172396)	promoter-TSS (NM_172396)	47.0	NM_172396	66818.0	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	7.77008765489538	7.90988852641148	7.58057252186465	7.71775210629573	7.98359226342913	7.61737077865757	0.0343289710227801	0.887122025993752	0.973818520404627
Merged-chr10-128089687-2	chr10	128089187	128090187	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016774, intron 9 of 9)	intron (NM_016774, intron 9 of 9)	-3096.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	3.64176509384827	3.18291274738262	3.68765290174171	3.75953288169375	3.41770669796526	3.99208363194613	0.739332130786039	0.2479574620869	0.645106161833394
Merged-chr11-60912592-4	chr11	60912105	60913105	+	709.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025294, intron 1 of 2)	intron (NM_025294, intron 1 of 2)	1187.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	5.0091468888735	5.0824661963321	4.73634860762481	4.81536596466154	4.8656034354409	4.44448987420536	-0.501974136970192	0.234655131435654	0.630760270602419
Merged-chr7-19225865-1	chr7	19225365	19226365	+	580.0	f1_balb.idr	Intergenic	Intergenic	-2524.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	3.16973967369201	3.27108171917853	3.65738982137816	2.96382859306234	2.84350811734069	2.97895997112462	-2.04979441095521	0.00425138814575873	0.0544816733146915
Merged-chr5-52743033-1	chr5	52742533	52743533	+	711.0	f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1459.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	5.88067921896299	6.21356644731267	5.51710944630289	5.31695496426566	5.30808387965713	5.45855971048442	-1.03354344634581	0.00369114473423663	0.0490079417658149
Merged-chr12-17347709-1	chr12	17347209	17348209	+	1000.0	f1_balb.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-784.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	6.19281472367534	6.55741406417106	6.45803323824094	6.97278863006246	7.02641828382847	7.03779106679522	0.9432811508389	0.000382401436751403	0.00849862680267381
Merged-chr2-167342190-2	chr2	167341690	167342690	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	6988.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.37367754022567	3.41619627636292	3.40673205486171	3.41166978561714	3.29491092075704	3.42249610772864	-0.0976120404310005	0.868553720407372	0.969671921316722
Merged-chr8-84270469-4	chr8	84269953	84270953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294281)	promoter-TSS (NM_001294281)	-51.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	7.66307944291168	7.69615231770181	7.38494556421455	7.74511745826766	7.93727298970432	7.46417591515876	0.207968303081639	0.408246286957786	0.781982251625038
Merged-chr2-148575670-4	chr2	148575174	148576174	+	773.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96941.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	2.68112959178134	2.74103703003981	2.93924993750168	2.7953543041572	2.79470254975586	2.89452979310844	0.208337641890523	0.771803447374131	0.943614978016208
Merged-chr1-177470317-4	chr1	177469789	177470789	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24468.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	2.21571254751167	2.14987937792633	2.44796228843576	2.17351348718535	2.28500939240122	2.13348817751502	-0.487648450899283	0.585482366991021	1
Merged-chr7-135699450-4	chr7	135698962	135699962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	16917.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.13435216422469	3.83526707706881	3.97591544343457	4.23674718398499	4.04226022163656	3.83628800162742	0.191277856410642	0.710962715794919	0.924511716032697
Merged-chr8-105471490-4	chr8	105471018	105472018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026481)	promoter-TSS (NM_026481)	-96.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	3.88446563358345	3.28825731659464	3.41215351206112	3.47012349077109	3.4381258211932	3.30566654526381	-0.551864894255855	0.389047796446627	0.768867573000832
Merged-chr4-125066109-2	chr4	125065609	125066609	+	850.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	-452.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	5.97860438711075	6.3738802502849	6.09381808351104	6.16265100379957	6.19466439790497	6.01731496854199	-0.0549801084316719	0.854747196572508	0.965987623019113
Merged-chr5-101766476-4	chr5	101765970	101766970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1340.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	7.52259406302342	7.73278650619918	7.39840973963338	7.57916236561425	7.9236821782258	7.58035862768495	0.213631664699486	0.388981399429273	0.768839329819819
Merged-chr7-127630068-3	chr7	127629552	127630552	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14780.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	4.09196943628539	3.91277827890306	3.71652586066987	3.88198212254962	3.54621155816677	3.6194241209139	-0.750710769544338	0.178898471048679	0.560236602177532
Merged-chr6-33484773-4	chr6	33484257	33485257	+	922.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	235629.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	5.21097192383345	5.73996649226998	4.94525970589968	5.13865469551625	5.45416647866836	5.01296279160179	-0.257021017556272	0.544718275159594	0.857894224757806
Merged-chr19-47447036-4	chr19	47446546	47447546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	17365.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	7.2174792036466	6.99154068911894	7.0181728139017	6.74095524249889	6.62560724511159	6.4759579703849	-0.708976331961213	0.00595715295025689	0.0694330834409546
Merged-chr10-20663171-4	chr10	20662695	20663695	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	61883.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.20769754287052	5.2129564355525	5.37214654361327	5.07502418564201	4.99189108139189	4.90210418638818	-0.553197839031076	0.127009195950305	0.476314670819392
Merged-chr11-70241055-2	chr11	70240555	70241555	+	918.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331118)	TTS (NM_001331118)	-1203.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	2.9500011181375	2.71576982294377	3.12227595071408	2.91243604320963	2.91282213888436	2.77815543816013	-0.303638950250474	0.676724540015015	0.912549881054299
Merged-chr1-58795511-4	chr1	58795065	58796065	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009812, exon 1 of 9)	5' UTR (NM_009812, exon 1 of 9)	191.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	6.82743145525308	6.68112020441205	6.71163812473306	6.70682520801375	6.43511685210258	6.81562455549005	-0.142953360734709	0.594322443220018	0.87898947489373
Merged-chr3-41587149-2	chr3	41586653	41587653	+	801.974976	f0_balb.idr|f0_c57.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22273.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.79252148025815	5.22125998281633	5.2396074636438	5.10296325644062	4.93720088799664	5.27227392978815	0.0120457491593167	0.975572846379951	0.994529237234851
Merged-chr2-32590404-4	chr2	32589903	32590903	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 2 of 4)	intron (NM_011373, intron 2 of 4)	3325.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	5.69514204164504	5.43135024984236	5.63791261802814	6.18983255863317	5.8841739994432	5.61537230999266	0.603814435379609	0.0745873701650377	0.359450127226483
Merged-chr5-135957721-4	chr5	135957203	135958203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16773.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	7.4327524577432	7.6253594300368	7.60221160641608	7.48868315398078	7.67251447967969	7.45120411025534	-0.0118045821105698	0.959172330468328	0.990174309444982
Merged-chr3-22021709-4	chr3	22021225	22022225	+	921.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54927.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.84354022104822	3.08908387308098	3.07687394789655	2.92704516612765	2.75528195219116	3.14838863334327	-0.28040900341179	0.694252789886201	0.919210273513843
Merged-chr10-70261160-1	chr10	70260660	70261660	+	699.0	f0_balb.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	15884.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	3.65048469874864	3.57735828098023	3.26172960794671	3.36058212839186	3.24978087406138	3.45201972997018	-0.6180284143634	0.315857134217472	0.710103428795101
Merged-chr6-122819889-4	chr6	122819403	122820403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021899)	promoter-TSS (NM_021899)	-281.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	7.48918401917887	7.70811098884061	7.43152244716088	8.0486567664111	7.80392427503216	7.65039672882898	0.425703541130939	0.078828779650265	0.370889742558057
Merged-chr5-43880767-4	chr5	43880264	43881264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	11955.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.6958836351049	7.37771766246621	7.7048415864633	7.57154829006905	7.88884028043604	7.46451686665581	0.0931877896214776	0.713538617635173	0.92557476402444
Merged-chr17-47780356-2	chr17	47779856	47780856	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-5388.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.11970938957216	3.16695078186903	3.69666084190788	3.31177843103009	3.01521794528192	3.52582751438429	-0.200432801119263	0.772811068613395	0.943906349778653
Merged-chr15-5464872-2	chr15	5464372	5465372	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31446.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	1.80533803656068	1.78106711414161	1.70015387441074	1.93198771063177	1.78454145594765	2.05435448485307	1.40161277220519	0.175129321213211	1
Merged-chr2-160214290-3	chr2	160213783	160214783	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113211.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	7.31698934736689	7.0647812760212	7.08706459812364	7.1953331917043	7.26716327881653	6.89252829220573	-0.03955516619704	0.877410665268911	0.971563826171465
Merged-chr5-123129131-1	chr5	123128631	123129631	+	571.0	f0_balb.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3498.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	3.63649975949722	3.17460012056388	3.38697497955258	3.52123794263614	3.3719925640132	3.51423272763193	0.194256596602025	0.754283353314517	0.938849233385426
Merged-chr6-49973706-3	chr6	49973206	49974206	+	775.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136535.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	2.49618649265311	2.48814464849191	2.60838402474508	2.48740972620944	2.56569796150304	2.28680138317422	-0.438019907316459	0.601559931297653	1
Merged-chr9-21760425-4	chr9	21759951	21760951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026282)	promoter-TSS (NM_026282)	-148.0	NM_001357331	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	5.0068299151655	4.69933519742702	4.69365089431328	4.76428087677337	4.58024258070541	4.40919144557253	-0.502554214794198	0.239405860227293	0.636282788382435
Merged-chr10-94122278-4	chr10	94121776	94122776	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25655.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	4.46913233536563	4.38488195791699	4.84263238876339	5.05840886581594	5.2048259014926	4.90840352109621	1.14831517900681	0.00567394554218481	0.0669385595738145
Merged-chr10-67265081-3	chr10	67264581	67265581	+	840.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20200.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.88763655893605	2.68971103561741	2.99482319271158	2.78719529965241	2.52014869095075	2.57455642320682	-1.23346413200517	0.11597553772522	0.454742591915558
Merged-chr15-86169884-4	chr15	86169400	86170400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15828.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	8.78436371176446	9.10833891520176	8.64657682087889	8.69440825038747	9.0701847601993	8.43303512670416	-0.13490663773442	0.60534492906589	0.88352351689788
Merged-chr9-40763814-2	chr9	40763304	40764304	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	MER31A|LTR|ERV1	-37469.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.7701441340821	4.83538819774624	4.93494911899631	4.2829347606334	4.17036517567599	4.13010947671999	-1.63623210999919	0.000211372277800551	0.00523448347953222
Merged-chr4-32401595-2	chr4	32401095	32402095	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15840.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.30018139582467	2.36157180036672	2.47524453357076	2.20938728566457	2.36717580837663	2.29429096290612	-0.554507374241209	0.513564257758795	1
Merged-chr9-50567626-4	chr9	50567120	50568120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	intron (NM_008360, intron 3 of 7)	-6352.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	6.59164503772944	6.5716495666028	6.18880306211739	6.40121762522073	6.47898266104924	6.48889241176931	-0.031447362883649	0.910803865997078	0.979969158480567
Merged-chr10-117717754-4	chr10	117717258	117718258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	7.52698904641265	7.45485884921142	7.29530196629626	7.41070156181601	7.69148127072403	7.14133086426284	0.0187175373956522	0.942611034100738	0.987202156853573
Merged-chr5-138228619-2	chr5	138228119	138229119	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	intron (NM_001013773, intron 1 of 5)	2715.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	3.43832664633447	3.29310112301032	3.61516865217509	3.1450324765817	2.90122036510687	3.53659656625218	-0.938940034368315	0.179017504298673	0.560351002346369
Merged-chr7-80371411-4	chr7	80370930	80371930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172903)	promoter-TSS (NM_172903)	-55.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	5.14273840900432	4.62289077377586	4.98918290539391	4.92618104696848	4.52465751641311	4.4045254476238	-0.666793797237382	0.140995015554655	0.501663955112961
Merged-chr2-153082193-2	chr2	153081727	153082727	+	615.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145536)	TTS (NM_145536)	16272.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	2.68048083533719	2.54015751410915	2.6824168482551	2.85151259117598	2.67390304637509	2.87856482084746	0.897206619879437	0.229979943948502	0.625733149436498
Merged-chr7-25278993-4	chr7	25278511	25279511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3168.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	8.0808613894807	8.14470544857865	7.93121491854095	8.06589688420424	8.07482253301616	7.84927237332095	-0.0761044790688692	0.728177143103992	0.930438087415967
Merged-chr1-65054700-1	chr1	65054200	65055200	+	578.0	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	-3537.0	NM_007777	12968.0	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	3.52190437635258	3.26324764506272	3.37483874780904	3.2083104449152	3.14547640371489	3.15679954231912	-0.911726992378332	0.147262963352943	0.51213793055522
Merged-chr3-41742545-4	chr3	41742049	41743049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	-35.0	NM_001081411	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	7.87427893107226	7.90572888287125	7.6418207211206	8.01010131834058	8.00734665320082	7.74463910524143	0.162253164917258	0.478885572666069	0.823902888227897
Merged-chr9-63611156-4	chr9	63610628	63611628	+	762.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	8482.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	6.48638264470646	6.24823892661117	6.39352231679601	6.51875153836897	6.50566671460473	6.31687757314142	0.126700415145894	0.64400435375132	0.900020394479918
Merged-chr7-18840683-4	chr7	18840205	18841205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153760, intron 1 of 4)	intron (NM_153760, intron 1 of 4)	739.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	5.15826338530817	5.29826080623695	5.50421601013714	5.78468195030251	5.94277548264791	5.85372533970941	1.02793723169574	0.00168992234605406	0.0271195869952683
Merged-chr12-80833733-4	chr12	80833199	80834199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	43167.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.9762105766553	6.80874255983657	6.62663608054199	7.35696083179389	7.4930316582582	6.83219980742382	0.693602377537845	0.0172091449240765	0.146086363073103
Merged-chr4-47303540-4	chr4	47303039	47304039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-49683.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.70531825481538	6.9360589786637	6.80840497354483	6.55182628100401	6.90591294071144	6.8372851587243	-0.069630520952881	0.793716385963231	0.950531747588938
Merged-chr17-35766546-4	chr17	35765986	35766986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5964.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.80297417571512	4.5326150903795	4.57984738870447	5.25760869882587	5.42318218664775	4.97829692565821	1.29630384548963	0.00127553012891265	0.0217756075023725
Merged-chr1-176814200-4	chr1	176813703	176814703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029756)	promoter-TSS (NM_029756)	-457.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	8.15778050513274	8.10553765734588	7.84128012334791	7.97903426410557	7.94871250150576	7.7591519221858	-0.20556873703269	0.3643398231125	0.749738197211813
Merged-chr13-43785890-2	chr13	43785390	43786390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	778.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.70641201274233	8.9662750173555	8.51281970507279	8.18080084411515	8.77872817148202	8.39813588832017	-0.363145119796081	0.161028480398684	0.533691460089767
Merged-chr6-117905868-2	chr6	117905368	117906368	+	782.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	-914.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	6.82056153741939	7.10881800019952	7.26011222315984	7.26902262952615	7.40576345284038	7.27219442378364	0.376308200346856	0.137236781426348	0.495027571456897
Merged-chr3-27987860-2	chr3	27987360	27988360	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	3689.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	2.58590898447856	2.61566116007027	2.78022170350914	2.69747974847862	2.65006739185488	2.79297227257738	0.288337720245202	0.697710837905876	1
Merged-chr16-90830580-4	chr16	90830116	90831116	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-243.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	4.57893555900764	4.40342414270546	3.99725325211481	4.22434769558903	4.2915868607392	4.06939929890708	-0.413091616339858	0.408136666299677	0.781935385541746
Merged-chr11-60780520-2	chr11	60780020	60781020	+	769.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175491, exon 1 of 1)	3' UTR (NM_175491, exon 1 of 1)	2995.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	4.3106767741897	4.3111120470695	4.36313210938657	4.53636742941143	4.46899857938772	4.63494804581615	0.555610500874895	0.197729699642474	0.585831904182556
Merged-chr8-106148099-4	chr8	106147621	106148621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2233.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	6.45283078197802	6.3662870607709	6.84394312983137	6.88775153644939	6.97508397038764	6.65781174011693	0.46355820111867	0.102118585352835	0.426111190513952
Merged-chr12-40558822-4	chr12	40558323	40559323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	112770.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	7.75316500965365	7.62927293074308	7.43763106590253	7.81258294970369	7.92099059763557	7.68422992649245	0.281031339132083	0.225032396513478	0.619934301718101
Merged-chr19-10023836-4	chr19	10023328	10024328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5634.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.74116502976634	6.20560468303143	6.23660320330733	6.21861048607577	6.47518373690813	6.19456976410575	0.393018346557241	0.212042997990009	0.604420229358776
Merged-chr4-129827387-2	chr4	129826887	129827887	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	6679.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.81741502853323	6.74034821496788	6.5090238330341	6.8943298022735	7.32562699724242	6.43123666857781	0.386410713663913	0.230441238799292	0.626271502694957
Merged-chr5-139286106-4	chr5	139285625	139286625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32628.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	7.82504876713589	7.98378077627369	8.01099159864552	7.73394254574953	8.07754719800981	7.79331779457053	-0.0815183592731903	0.724326688428553	0.929317175139469
Merged-chr4-109114508-2	chr4	109114008	109115008	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	B1_Mus2|SINE|Alu	3528.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.29579970620012	3.00431181764132	3.20417029488258	3.45600326082339	2.92137095431137	3.33365071855514	0.333971988558328	0.629634338465785	0.894364606069187
Merged-chr9-43034492-4	chr9	43033992	43034992	+	713.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 4 of 40)	intron (NM_001359232, intron 4 of 40)	71226.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	2.97429760463318	3.09999898707465	3.3545515384557	2.99117910759265	2.81439161102682	3.10017941418926	-0.813334132466778	0.242977176936162	0.64023154153456
Merged-chr7-119899552-4	chr7	119899046	119900046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126475)	promoter-TSS (NR_126475)	-565.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	4.90161497290658	4.632690665051	4.346758831623	4.59702092020051	4.57544544292155	4.71981006478403	-0.0724265952914234	0.869371026107043	0.969788171765313
Merged-chr13-110568669-4	chr13	110568172	110569172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173628.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.74246578204669	7.71613037480153	7.52437410209652	7.79581173198091	8.05039670220965	7.46483646600037	0.193650060733056	0.448481151737394	0.80725470300829
Merged-chr8-26697480-1	chr8	26696980	26697980	+	1000.0	f0_c57.idr	Intergenic	Intergenic	126943.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.81677901195661	5.57681152809311	5.85802823376354	6.39188002563928	6.48410838871832	6.0871349314197	1.01884651587557	0.000882242984317499	0.0163423139445883
Merged-chr1-67038858-4	chr1	67038372	67039372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	0.0	NM_001190985	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	4.58191503090465	4.60037209381774	4.50618620855878	4.67545883428795	4.35941323284058	4.03713422652841	-0.434341484332593	0.362087627168918	0.747675323428227
Merged-chr14-21053307-2	chr14	21052807	21053807	+	746.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018829)	promoter-TSS (NM_018829)	733.0	NM_134079	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.31557826234551	4.09901556638683	3.79453586332867	3.9196173763485	4.06928934867707	4.12333775345629	-0.166591760117841	0.748387716933871	0.936975942448953
Merged-chr7-73528581-4	chr7	73528082	73529082	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	13164.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.54562153604743	5.79193888005347	5.88585271548244	5.95216350525838	6.10976359181624	6.31959014541097	0.679883790119714	0.0306418041192468	0.211658910605536
Merged-chr7-99379758-2	chr7	99379258	99380258	+	819.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1760.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	5.09704855069792	5.09830582084642	5.36751309961658	5.17245985249497	5.2340509768693	5.6673560805124	0.361703636264961	0.33506026936741	0.725339338581532
Merged-chr1-157386697-1	chr1	157386197	157387197	+	693.333313	f0_balb.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-25655.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	3.71016718776362	3.54467153028284	3.70365857247242	3.4242676473791	3.37153483361615	3.67239868759952	-0.596118623230394	0.300945997939313	0.697653874358754
Merged-chr5-34547172-1	chr5	34546672	34547672	+	637.0	f1_balb.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	-2404.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	3.45680252947696	3.55208647276107	3.7339967522884	3.36249838225884	3.47103987740361	3.70527324031079	-0.235550158238003	0.687023492541803	0.916965854132552
Merged-chr8-111645884-2	chr8	111645384	111646384	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	MLTR25C|LTR|ERVK	2441.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	3.45000762919417	3.47095380626625	3.46529791250978	3.62912186261067	3.89656597196398	3.29608644580274	0.633966281136803	0.303765118898422	0.700294220341559
Merged-chr5-105496837-3	chr5	105496340	105497340	+	940.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-22631.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.36535139171718	4.89025074011799	4.66796793465503	4.16194164652638	3.64547918774259	4.01447683927172	-2.85397417558383	1.20617043255905e-07	8.46231276158295e-06
Merged-chr11-116026536-2	chr11	116026036	116027036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2032.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	6.62322953451774	6.55884394473474	6.17469351261636	6.90286053768314	7.09652062563212	6.79951052983074	0.729050087550635	0.00967990576662863	0.0982850029322312
Merged-chr10-23783543-2	chr10	23783043	23784043	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	1908.0	NR_037680	100529074.0	Mm.371846	NR_037680	ENSMUSG00000070063	Snora33	ACA33|MBI-42	small nucleolar RNA, H/ACA box 33	snoRNA	2.60159224826265	2.70690941917756	2.99388921213978	2.79312537887713	2.84172696809224	2.89297655822507	0.361222537376011	0.625464715224594	0.892513881101067
Merged-chr5-145178736-4	chr5	145178266	145179266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	11553.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	7.18883094703392	7.22272108253842	7.38353814780348	7.39387345909163	7.40456106296984	7.37678930939476	0.193182886584462	0.398928817694571	0.775491025064514
Merged-chr4-40782105-2	chr4	40781605	40782605	+	676.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24220.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	2.77553958775907	2.87201784361434	2.86977087665645	2.78549742324426	2.70959434873266	2.75877988774531	-0.463359391014497	0.516990158648387	0.844460030891516
Merged-chr4-55805493-4	chr4	55805006	55806006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-273031.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.20353233466279	3.89218547275719	3.80430195162561	3.76026212089746	4.03071343317184	4.25587026328885	0.125023441657403	0.816851712073177	0.956754861188725
Merged-chr1-74262565-2	chr1	74262065	74263065	+	768.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029711, exon 7 of 10)	exon (NM_029711, exon 7 of 10)	-16035.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	2.74595495298345	2.73234066510108	3.00962669811762	2.70874687083453	2.56168490293414	2.79187259420455	-0.765531755740297	0.30851270866171	0.704565421726157
Merged-chr5-101841320-2	chr5	101840820	101841820	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 66 of 66)	L1M2|LINE|L1	76190.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.52950595482921	2.53535514977829	2.67846227870477	2.76383965629571	2.84032025630434	2.93275474059987	1.48523396881572	0.049983997289036	0.28463375625692
Merged-chr2-117108252-4	chr2	117107711	117108711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12860.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.84320570290755	6.76680452133543	6.6542346103428	6.43399743170852	6.50414658281385	6.57928219182009	-0.410428261018431	0.111412441469518	0.445871935353881
Merged-chr7-44986694-4	chr7	44986199	44987199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019830)	promoter-TSS (NM_019830)	-201.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	7.64922581116326	7.74160550485217	7.51675652631599	7.81852850538672	7.81220476035849	7.43570202587988	0.0944883874573793	0.69434032414094	0.919210273513843
Merged-chr17-24632645-4	chr17	24632159	24633159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286720)	promoter-TSS (NM_001286720)	-23.0	NM_001357615	18207.0	Mm.148315	NM_008743	ENSMUSG00000041429	Nthl1	Nth1|Octs3	nth (endonuclease III)-like 1 (E.coli)	protein-coding	5.29455331239089	5.598931518321	5.7170323627124	5.32074308453664	5.20136483716785	5.24251472010546	-0.561650582479244	0.110300373679574	0.443718501891802
Merged-chr2-62646749-1	chr2	62646249	62647249	+	545.0	f1_balb.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	-494.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	7.24858949732421	7.18211514361244	6.59257423280148	7.22119798397569	7.43133018722325	6.59548523220308	0.138021541452432	0.680153845892352	0.914139397449033
Merged-chr13-37581094-4	chr13	37580602	37581602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	235757.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	7.01129209395404	7.08534650145572	6.89045608924629	7.64850837949391	7.88061656891022	7.49420591137243	1.01731002455586	3.48339548910918e-05	0.00116873537039434
Merged-chr15-53415994-4	chr15	53415493	53416493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69810.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.29399054739125	7.0035029101914	7.2170065824497	7.12061875044492	7.32148603355882	7.41689195615205	0.170797532509923	0.491573466902384	0.830577684235539
Merged-chr13-64153379-4	chr13	64152874	64153874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-175.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	6.97641594512663	7.0805789720607	6.95392729914339	7.17620688884159	7.44020223938153	6.98379810744699	0.328423423177325	0.201671837310064	0.591183995476557
Merged-chr3-137969375-3	chr3	137968868	137969868	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12181.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	4.46543885285354	4.4054653874051	4.0859362686516	4.04082460777709	4.3228400822263	4.1056750733953	-0.452339498397473	0.353642384540604	0.740888675701956
Merged-chr4-62626588-4	chr4	62626090	62627090	+	837.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	6918.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.30721484705867	3.04176148330044	3.43495407513138	3.11255108444408	2.89283854165288	3.50473466525919	-0.317312467441745	0.653575491027424	0.903427295126087
Merged-chr1-91252200-4	chr1	91251698	91252698	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1632.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	7.32897341191081	7.33884201708061	7.27223063524551	7.41457831601242	7.47047672011217	7.29474597614155	0.125382948083208	0.58190528297401	0.873484978987509
Merged-chr6-22347657-4	chr6	22347128	22348128	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	8453.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.33025594987312	4.4672353775771	4.29030679303116	4.4836910314152	4.40103573566833	4.40361705193005	0.15471188693073	0.724198099861557	0.929235681798675
Merged-chr7-141171586-2	chr7	141171086	141172086	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	B1F|SINE|Alu	1265.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	5.30961429876802	5.25776679719713	5.77751448772194	5.59091831674648	5.54084412204568	5.88407093494238	0.408792428360062	0.255439954371607	0.652537847534371
Merged-chr6-120464672-2	chr6	120464172	120465172	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	1475.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	4.7131082253924	4.76825612061896	4.75470379923426	4.79601959715914	4.78508056026561	4.93064841652899	0.201193574543862	0.605862835270525	0.883657807362598
Merged-chr11-83615699-4	chr11	83615202	83616202	+	790.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-22615.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	4.98780794037564	4.5658596713748	4.73116412677195	4.84655939117978	4.38414296748662	4.26217747256603	-0.586031233529316	0.210929229550772	0.603272241860952
Merged-chr2-23007910-2	chr2	23007410	23008410	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	32331.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.09459471074316	3.89462616051046	4.14915190443869	3.83808415881231	3.99870585201435	4.74638309009962	0.55503242462309	0.327101180685203	0.719317370353337
Merged-chr7-118277646-4	chr7	118277126	118278126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33719.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	7.56333780759487	7.40022274329316	7.33959788276141	7.55072246522197	7.72575898710993	7.50364035920861	0.235330281318396	0.310790576013126	0.706043690416912
Merged-chr12-95738312-4	chr12	95737793	95738793	+	865.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	46067.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	3.10720792810006	3.37598774019494	3.0418494770582	3.08263567456788	3.22920251376745	3.55936393933143	0.454535815352736	0.503817931920269	0.837244762022363
Merged-chr12-32008891-1	chr12	32008391	32009391	+	1000.0	f0_c57.idr	intron (NM_011158, intron 2 of 10)	B1_Mur2|SINE|Alu	52388.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	3.11108080343675	3.03167238338678	3.16621038752507	3.7042173204619	3.53484377129907	3.83209661230222	2.41259083046722	0.000207706991864397	0.00516972110428611
Merged-chr1-128245132-4	chr1	128244654	128245654	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356529, intron 1 of 12)	intron (NM_001356529, intron 1 of 12)	1017.0	NM_001356529	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	6.68816342002093	6.55521500290647	6.29653696897031	6.68451205930877	6.70665504327007	6.10856497380705	0.0167269412244362	0.957146113813157	0.989897630205272
Merged-chr9-108489504-2	chr9	108489004	108490004	+	811.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008483, exon 30 of 33)	exon (NM_008483, exon 30 of 33)	-1172.0	NM_001168372	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	2.50296071628609	2.53962148852268	3.01807191959273	2.60918859378792	2.46195601297557	2.69028250478419	-0.625654727279984	0.442201224028612	0.803131781747343
Merged-chr14-47647875-2	chr14	47647354	47648354	+	800.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1457.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	5.25352742091948	5.6623642948825	5.42360546438749	5.51260066938235	5.4195856723022	5.33142915252782	-0.0691201381990076	0.843007705316228	0.963253932166159
Merged-chr5-140648687-4	chr5	140648171	140649171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	CpG	360.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	7.13830013142435	7.10362574482383	7.14237084791318	7.41017832907525	7.32709606406574	7.00090399310982	0.20772228081648	0.401670321584421	0.777748903350594
Merged-chr2-23005449-2	chr2	23004949	23005949	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34792.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.46387002990566	5.4822528882673	5.62417668437271	5.53348196480295	5.60798031841605	5.60537913833751	0.120948747612951	0.706406310595954	0.922959194348248
Merged-chr5-117495480-1	chr5	117494980	117495980	+	753.0	f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	81478.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	5.25099878080795	5.57466171925602	5.56849873300573	5.41032155568007	5.56572996903572	5.60354017147118	0.111026561979162	0.744042637505261	0.935879486357749
Merged-chr13-113489677-2	chr13	113489177	113490177	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	URR1B|DNA|hAT-Charlie	13167.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.35624437964867	3.7233298083859	4.29435189455702	4.11372911958963	4.03194985479635	4.31901835376316	0.00538043425186054	0.991985248901769	0.998363319124397
Merged-chr1-74243019-4	chr1	74242507	74243507	+	877.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	ID_B1|SINE|B4	6490.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	5.23682543342681	5.11421302411745	5.45927565140844	5.80250047363017	5.76746347619867	5.63469731203962	0.908428309521037	0.00656735762361829	0.0746015963339291
Merged-chr11-46815510-3	chr11	46814998	46815998	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178759, exon 2 of 9)	exon (NM_178759, exon 2 of 9)	4699.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.27884081546107	5.26383421558551	5.92007125949781	6.17911219226387	5.75853246990904	5.86599260563472	0.792815798666807	0.0332721526107304	0.222580335719478
Merged-chr5-17835946-4	chr5	17835428	17836428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159555)	promoter-TSS (NM_001159555)	-32.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	5.60002322221414	5.92940473242219	5.58301690489902	5.88039087278872	6.12875791656065	5.70377292704058	0.366518658185582	0.271615116811392	0.6689720175125
Merged-chr11-44382297-4	chr11	44381800	44382800	+	985.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17763.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.90998542328135	4.7935390598883	4.5678695080482	4.97885314313886	4.72614133027096	4.54687535705517	-0.0107334678490792	0.979755969734976	0.995332945386782
Merged-chr2-92484421-3	chr2	92483934	92484934	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23916.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	6.85248295900453	6.8123529617271	7.45235784865227	7.20447339786262	7.37959158466748	7.54702166589767	0.475390539677984	0.100993837846753	0.423819611637714
Merged-chr12-76947250-1	chr12	76946750	76947750	+	545.0	f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	14998.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.13223893027702	3.51702269281588	3.57133445172619	3.42783838838462	3.53739402840072	3.58959917189375	0.370611986209152	0.548584742394191	0.859834070202846
Merged-chr15-86210931-2	chr15	86210431	86211431	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3528.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.95325284154217	5.08136622955138	5.0600236764152	4.59883105892768	4.65133912092712	4.98992758799154	-0.638162428336422	0.107936449598629	0.438791093326299
Merged-chr7-99130227-4	chr7	99129732	99130732	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	10912.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.27925707343441	5.02128695944495	5.38578261854491	6.07410412169355	6.01924169948912	5.83778749726441	1.41869569331398	1.89337021667833e-05	0.000697095349510487
Merged-chr11-69554898-4	chr11	69554369	69555369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	5368.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	4.93179192922813	4.93749978866388	5.04399409790044	4.73368992501497	4.73715995628416	5.45685113821527	0.0865424509082352	0.841730321152096	0.962988975342446
Merged-chr5-124060381-2	chr5	124059859	124060859	+	575.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-28099.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.46725646189347	5.39027728624474	5.83061139506328	5.52353145389741	5.56438557575294	5.41582690290703	-0.106061076914973	0.757401621240196	0.939867481435175
Merged-chr7-28811417-4	chr7	28810921	28811921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	CpG	531.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	7.55877001668919	7.54993839618936	7.26006007235609	7.49447012871541	7.57206022560718	7.48408876740431	0.0702894496887339	0.763213379383691	0.941742427733164
Merged-chr7-82691624-4	chr7	82691139	82692139	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175317, intron 12 of 19)	intron (NM_175317, intron 12 of 19)	43025.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	4.09221797770096	4.01604098668485	4.15069163576674	4.11410004851959	4.33970009750605	4.43427615907448	0.60053952141848	0.203277893566914	0.593152860426278
Merged-chr3-65666447-8	chr3	65665930	65666930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037923, intron 1 of 2)	CpG	202.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	8.55786161232646	8.61515704150807	8.06618357320056	8.45652017213217	8.36647615676062	7.68949238212704	-0.305426960936165	0.296765256712778	0.693396705620489
Merged-chr8-26980085-4	chr8	26979613	26980613	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	2777.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.48907455442126	5.43964180564384	5.97929822345875	5.96367159722599	5.61097990566507	5.73538540234184	0.239280053395579	0.496098972508539	0.832884389427821
Merged-chr1-39369358-2	chr1	39368858	39369858	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	1507.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	4.89176833244459	4.75954205330691	4.74152444622947	4.98353982866035	4.78129419888272	4.84670680544434	0.154360972443155	0.69260273060159	0.91870248759071
Merged-chr17-27026118-3	chr17	27025593	27026593	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	2534.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	6.54338437010574	6.752395201733	6.83855926853975	6.57645724920392	6.78223129176379	6.39573732731897	-0.168166126420651	0.544085803369718	0.857551302506722
Merged-chr15-100423106-4	chr15	100422609	100423609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356952)	promoter-TSS (NM_001356952)	-54.0	NM_008732	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	7.86741697981206	7.87210171073861	7.21144264401449	7.7144549200673	7.70358594662066	7.42530130880127	-0.102117731853696	0.713431675630524	0.925540199658003
Merged-chr13-51397971-4	chr13	51397442	51398442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10676.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	6.92843564491563	7.10092546025438	6.76505542127227	6.99916196424228	6.82830684617971	6.62284433363704	-0.175952990944334	0.509959469522324	0.840623252721494
Merged-chr8-70352709-3	chr8	70352245	70353245	+	775.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 1 of 23)	CpG	534.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.76758889872384	6.74680845520178	6.67295447692217	6.88909308166823	6.15116651934542	6.83797559100222	-0.110088061241288	0.72581621889629	0.929724409589692
Merged-chr11-79623303-4	chr11	79622840	79623840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-177.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	8.36482394163282	8.58093614665398	7.76130132364772	8.08486509211368	8.52300903016296	7.74203640728935	-0.171138007731859	0.585420564609318	0.874991904941749
Merged-chr6-43848668-4	chr6	43848190	43849190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182412.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	5.38833742711124	5.32263253896218	5.73886445590433	5.31677575720168	4.98242945964251	5.08207350899739	-0.704647516935704	0.0577590583341256	0.310546376703665
Merged-chr1-170742608-4	chr1	170742118	170743118	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 15 of 15)	Lx8|LINE|L1	98086.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	3.19099705973676	3.13693864609413	3.29397098277327	3.28989444860711	3.21061605499318	2.94242238445695	-0.1873579344613	0.777835091255967	0.945251190347279
Merged-chr11-106206831-3	chr11	106206294	106207294	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026009, intron 6 of 12)	intron (NM_026009, intron 6 of 12)	9573.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	4.77904288499913	4.82529934673031	4.76776058455634	4.55645225652445	4.8713985981078	5.07777304582018	0.123004442844571	0.76452596776928	0.941979298344481
Merged-chr6-89296578-4	chr6	89296113	89297113	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10888.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.8728369896485	5.98413833797602	5.61193964016566	5.57881380012483	5.5596830146928	5.52883979025528	-0.523999372025556	0.102972304506492	0.427892504663214
Merged-chr8-117051643-2	chr8	117051143	117052143	+	725.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 15 of 43)	exon (NM_029686, exon 15 of 43)	30806.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	5.60296029995842	5.67935721294675	5.5877065799586	5.52418460695305	5.45424509012893	5.35135808701111	-0.334971165139586	0.300943479314919	0.697653874358754
Merged-chr8-69654452-4	chr8	69653943	69654943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177527)	promoter-TSS (NM_001177527)	-113.0	NM_001177527	636741.0	Mm.480188	NM_001177527	ENSMUSG00000091764	Zfp964	4732490P12|EG636741|Gm7187	zinc finger protein 964	protein-coding	5.69814760267908	5.92309961064701	6.08675608094989	5.18359411839103	5.03425760527174	5.6258367492855	-1.1640438089348	0.00140488854922484	0.0235491471401894
Merged-chr13-19842939-3	chr13	19842443	19843443	+	831.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18686.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.81986221936048	3.97007637768754	4.43552035209619	3.65099659994181	3.30361482244203	3.87582097536942	-1.50757386724401	0.0141366037968916	0.127662093415646
Merged-chr2-26604417-4	chr2	26603930	26604930	+	976.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026212)	promoter-TSS (NM_026212)	-13.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	4.98633805901348	4.99426989868701	4.42004329151166	4.41844796838963	4.04533457669332	4.2978994525878	-1.44231391818665	0.00239710230626273	0.0355094832557252
Merged-chr9-83540814-2	chr9	83540314	83541314	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7524.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.22718502330163	4.44641335294522	4.52158203696343	4.24803522475646	3.84647598243197	4.50951526305647	-0.484690629320424	0.341068720914396	0.730680899326597
Merged-chr1-79762975-4	chr1	79762463	79763463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1194.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	5.5607935793288	5.49050268141873	5.65891374936192	7.24706749836021	7.26959255954912	6.68930038734231	2.54627152680356	6.9316852630321e-17	2.74653174936369e-14
Merged-chr1-152827686-2	chr1	152827186	152828186	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 8 of 15)	intron (NM_010877, intron 8 of 15)	27533.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	2.90099486977745	2.72612938370985	2.97129289008899	2.96901238940628	2.82480982015422	3.10058434609178	0.472127963945391	0.504044509496413	0.837420592739604
Merged-chr10-117839090-4	chr10	117838596	117839596	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B3|SINE|B2	6878.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.27202463405313	6.07155447101278	6.51559509993129	6.53860013189427	6.67610693545759	6.37564403321227	0.417058046766623	0.150841078947702	0.517937708788858
Merged-chr11-34427410-4	chr11	34426908	34427908	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 27 of 51)	intron (NM_033374, intron 27 of 51)	112586.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	5.92724935979105	5.8663929477551	5.71344884349171	5.88094126619894	6.04517260789662	5.60477023256853	0.0460207090965632	0.885811755178109	0.973636976161493
Merged-chr19-37177188-3	chr19	37176667	37177667	+	725.06665	f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-1104.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	4.17951356549522	4.41856087962195	4.19580962926925	4.91950238995922	5.16021210969606	4.51324753061201	1.51589437280128	0.00108684055286909	0.0192167081859607
Merged-chr6-25809279-4	chr6	25808753	25809753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-27.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	8.24751741432668	8.73290030197224	8.02049837305492	8.17344431748818	8.70667350547767	8.1356065744382	-0.00411607323033764	0.988712842210315	0.997426973334006
Merged-chr1-172589455-1	chr1	172588955	172589955	+	609.0	f1_c57bl6.idr	intron (NM_029084, intron 1 of 4)	intron (NM_029084, intron 1 of 4)	1113.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	4.1239160896226	4.23495798555584	4.28890149414415	4.8761759063251	5.29349844595706	4.97665217607178	2.07105149844342	2.00702926097758e-06	9.9940688657943e-05
Merged-chr2-150362763-4	chr2	150362277	150363277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-12.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	5.47969691652271	5.94620083644764	5.81877118250407	5.94217590608508	6.24117296657036	5.63637780470881	0.377946789985692	0.281990630802278	0.679908771156903
Merged-chr10-118103451-4	chr10	118102935	118103935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38352.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.36014121082904	7.4445224409949	6.9778100603715	7.0180159584403	7.19301195545567	7.00775475969899	-0.30838057791132	0.235098316036673	0.631298953779956
Merged-chr12-84615306-4	chr12	84614785	84615785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 2 of 18)	intron (NM_008992, intron 2 of 18)	2181.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	6.70011921184047	7.10640986214531	6.97026320927614	6.45162129089437	6.81158619046539	6.05315442857148	-0.69491966012904	0.0313802936463456	0.214622018224982
Merged-chr8-27024717-2	chr8	27024217	27025217	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 1 of 11)	intron (NM_153592, intron 1 of 11)	918.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	4.90780488755025	4.65697886642396	4.97899027884827	4.83681120841203	5.14434236012624	4.65880012340051	0.135544813741864	0.745293586281761	0.936116619770028
Merged-chr5-123149834-4	chr5	123149322	123150322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	7629.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	4.43419464183961	4.42598847971231	4.74773413338351	4.42745640201369	4.46676059291647	4.74023183821616	0.0235672203856921	0.95724437147251	0.989925627980654
Merged-chr8-3279572-4	chr8	3279065	3280065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	52.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	6.11698548834892	6.51749426648638	6.58997371959851	6.67070219179569	6.56218347864212	6.36186103262765	0.200045280533873	0.496382858957577	0.83304138537226
Merged-chr2-124647887-4	chr2	124647371	124648371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-5710.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.14155076545973	6.47104687604641	6.33686605695531	6.0515249372553	6.32582843559183	6.33945132165125	-0.130950686536252	0.654428473750735	0.903779343778232
Merged-chr4-53159371-3	chr4	53158876	53159876	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	519.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.5771978743878	8.58845196668678	8.57750562832783	8.58372018020487	8.88549219489181	8.08079149123244	-0.0177287016018267	0.946197639038892	0.98796006280508
Merged-chr13-23530400-4	chr13	23529927	23530927	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-617.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	7.63072794905443	7.88590065209072	7.46439025031422	7.70317882339858	8.24426493781581	7.79032912440732	0.379355847770185	0.156704909357318	0.527599825920683
Merged-chr11-94689153-4	chr11	94688650	94689650	+	851.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-11657.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	5.15984799088071	4.81515020133557	5.12653697371546	5.01018808977258	4.96908829519311	4.94888848271953	-0.13198188577498	0.729671459553924	0.930635866770147
Merged-chr11-115612939-4	chr11	115612435	115613435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243586)	promoter-TSS (NM_001243586)	34.0	NM_001243584	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	6.7218248075366	6.65531594409322	7.12869589020078	7.01413625942679	7.08081249911981	6.90014495362718	0.251316988377879	0.351453335628231	0.739299452698803
Merged-chr10-13540089-4	chr10	13539583	13540583	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019961, intron 3 of 11)	intron (NM_019961, intron 3 of 11)	-12824.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	2.93348135496349	2.73197311082756	2.75077434260469	2.80523289457893	2.91998935771278	3.1215196001418	0.684798067187266	0.343625672609091	0.732481233929991
Merged-chr16-21908668-4	chr16	21908207	21909207	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172821, exon 7 of 13)	exon (NM_172821, exon 7 of 13)	16738.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	5.52655620326241	5.69155706334048	4.95749972923363	5.23030793219342	5.47032625576579	5.17808452186659	-0.263792102811443	0.506088745266371	0.838289047715586
Merged-chr7-89979743-3	chr7	89979241	89980241	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1235.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	6.95573027492148	7.27847915403208	7.14628781841423	7.094358640639	7.5472398082119	7.16667785006404	0.238970666586071	0.371873483450584	0.755841610252976
Merged-chr7-114079493-4	chr7	114078962	114079962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	38319.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.20902353959339	6.45069273126214	6.15420549274781	6.84599637210519	7.04636573013497	6.50429522915278	0.868801241653956	0.00316362188817095	0.0438804217487796
Merged-chr6-113624048-4	chr6	113623547	113624547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009507)	promoter-TSS (NM_009507)	26.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	6.21973530449	6.16239953669659	6.38690327152914	6.25002514871468	6.32331132229269	6.0084178075887	-0.069245395908944	0.810637857514945	0.955079786589595
Merged-chr13-113913735-6	chr13	113913232	113914232	+	991.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119224.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	7.12725107292854	7.56849763584012	6.62196940409044	7.23608021383646	7.45147220941112	7.29326567040436	0.230082034876126	0.462526963830456	0.815273593730977
Merged-chr14-101595811-4	chr14	101595302	101596302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	13389.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.97558505818536	5.69685319756984	5.83480408530915	5.75799464276764	5.7284894003016	5.66162365396021	-0.219536096796711	0.480993055432031	0.824891904452147
Merged-chr1-82793297-4	chr1	82792788	82793788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24832.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	4.80287343959283	4.83394731224085	5.10510736533544	4.41306309389277	4.95419268934281	5.04059319602995	-0.185123784082425	0.671047133946189	0.910289924720412
Merged-chr8-107277654-4	chr8	107277160	107278160	+	976.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-15810.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	2.45593099810625	2.66129942845097	2.57380451215948	2.76853520971381	2.71026027979491	2.83531008402794	1.12154592377222	0.145007682149222	1
Merged-chr7-45299951-4	chr7	45299416	45300416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17043.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	3.06644778067295	2.69463271289826	2.7772027314803	2.76739430833614	2.64850122904069	3.03057283943818	-0.188027031137555	0.804960128683975	0.953697404102693
Merged-chr13-22042512-4	chr13	22041993	22042993	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	456.0	NM_178186	319167.0	Mm.263165	NM_178186	ENSMUSG00000069301	Hist1h2ag	-	histone cluster 1, H2ag	protein-coding	7.19373655795226	7.29899560470366	7.3576250299378	7.16949218830955	7.84301964841248	7.3932278309121	0.333901919208606	0.226027942118289	0.62108381618358
Merged-chr8-121950362-8	chr8	121949802	121950802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-190.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	7.06950017696693	7.30159533210317	7.12193149577074	7.10281801998709	7.34585007295577	7.25218611549618	0.103599272813652	0.670684471785444	0.910068549572303
Merged-chr2-167927847-2	chr2	167927347	167928347	+	693.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4480.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	2.89730804971205	3.140048654843	3.18738741234767	2.93571487719886	2.94646884327368	3.14723584389137	-0.315832404161366	0.642861952653622	0.899548231805501
Merged-chr13-24810312-2	chr13	24809812	24810812	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 4 of 4)	intron (NM_024473, intron 4 of 4)	8655.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	3.88691723993845	3.8663933745786	4.33406201098611	3.97085066680281	4.08544609375415	4.00622260748986	-0.0330189532235519	0.949081097740887	0.988169196639905
Merged-chr1-152525120-4	chr1	152524620	152525620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	100097.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.38272516809136	4.86442782943325	5.32397367267388	5.27265352147859	4.93289331555858	5.06418884045244	-0.230795196020008	0.561174670426601	0.865407801976397
Merged-chr4-19893987-4	chr4	19893486	19894486	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	28580.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	6.99997651735965	7.32773426824561	7.1723866065371	6.86700217630714	7.05390925868814	6.806944792039	-0.385230340718219	0.132814792055921	0.487669562823071
Merged-chr6-125163869-5	chr6	125163275	125164275	+	951.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289726, intron 2 of 6)	intron (NM_001289726, intron 2 of 6)	1998.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	5.44604231382279	5.68562716539716	5.45049059711544	5.34393736933925	5.47102626019276	5.51347409384968	-0.181235013172041	0.587808561032828	0.876090509043824
Merged-chr11-95835481-4	chr11	95834971	95835971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-6824.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.84026508635489	6.7300960027206	6.98974191136219	7.07992632873487	7.09149064656041	6.70603602561989	0.198713090184998	0.452876445295334	0.809457484278845
Merged-chr7-27577817-4	chr7	27577304	27578304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175107, intron 8 of 9)	MTC|LTR|ERVL-MaLR	-13748.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	5.66412703163949	5.41590444995884	5.72582200447036	6.67630724224587	7.0663808901877	6.53487266626761	2.00155480341155	1.38229334528738e-10	1.79715413554175e-08
Merged-chr14-27183831-2	chr14	27183331	27184331	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	39838.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.26274078562664	3.28964158033402	3.55461302326466	3.19204967382277	3.17091411365758	3.4213580805427	-0.443257404861001	0.479921050968947	0.824391932626821
Merged-chr17-45585031-3	chr17	45584541	45585541	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199116)	TTS (NM_001199116)	7352.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.66400783848613	6.66439997016923	7.06458602741787	7.0566731104641	7.24653733660079	7.5444823162058	0.746300726865469	0.00737302167575956	0.0811879434952141
Merged-chr8-90955391-1	chr8	90954891	90955891	+	674.0	f0_c57.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	23142.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.48244150814594	5.31058218882742	5.46569325176539	6.18417822969513	6.17116757496983	6.34433034193236	1.45357079694475	2.31598114432414e-06	0.000113826437718206
Merged-chr17-6316818-3	chr17	6316197	6317197	+	781.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 1 of 4)	intron (NM_001166629, intron 1 of 4)	777.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	6.39134199222491	6.8146629030439	6.61082152345507	6.96241995909071	7.32760832777452	7.05687340441618	0.787872603866019	0.0045288991339703	0.0570884167761553
Merged-chr12-40478174-4	chr12	40477683	40478683	+	703.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	32130.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.75688456485465	3.93984120153581	3.82040032685358	4.22134403217212	3.61210135901314	3.83900411456309	0.225548936352799	0.687153625461241	0.916983035113856
Merged-chr13-101751625-2	chr13	101751125	101752125	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	16592.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.43238503826377	4.23994747253483	4.42743283118379	4.648725945188	4.73510914216021	4.7377319828624	0.845519872349105	0.0457447804833843	0.270163368192309
Merged-chr14-34489371-3	chr14	34488878	34489878	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	L2|LINE|L2	13168.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	4.86353365123031	4.95575332032521	4.72103039989514	5.18399830886192	5.49770686025433	4.83206653031223	0.757978243642314	0.0651659410219487	0.332860707068093
Merged-chr1-54684520-3	chr1	54684068	54685068	+	725.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-126884.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	2.92440470305733	2.92814315149016	2.59897503137456	2.84142007329639	2.73311466261444	3.16462317942522	0.454361623093159	0.562559227902793	0.865745518569294
Merged-chr11-69760760-2	chr11	69760260	69761260	+	849.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019871, exon 2 of 2)	exon (NM_019871, exon 2 of 2)	1084.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	3.62779117980916	3.56344240067255	4.03297823631092	3.79210668683344	3.4069052489717	4.14225748273408	0.181430162781023	0.768495933507393	0.942871018290895
Merged-chr15-101077763-4	chr15	101077221	101078221	+	878.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23322.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	4.49317986945505	4.26015509947454	4.32777210030203	4.28121655359412	4.20750805592243	3.95331442267571	-0.547925543715977	0.251265898209484	0.648731936769727
Merged-chr11-21403516-2	chr11	21403016	21404016	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32249.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	2.71375695494536	2.61012237690474	2.86117320427484	2.88687691741072	2.67462248424029	2.55697856067934	-0.0697005163122837	0.927811065792576	1
Merged-chr3-83842655-4	chr3	83842148	83843148	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	6.58406774943609	6.29842821326625	5.99196849432788	6.45384266513583	6.41682936270795	6.21676334503749	0.0737219252058876	0.809846037641518	0.954819723409146
Merged-chr16-56726858-3	chr16	56726373	56727373	+	715.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 15 of 15)	L1MEf|LINE|L1	-9423.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	2.9765787212112	3.03141213844686	2.92556530198954	2.85033562290525	2.75838107363615	3.05695527690086	-0.45142553782481	0.519709541482994	0.84598062342698
Merged-chr2-122110124-3	chr2	122109629	122110629	+	683.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 4 of 39)	intron (NM_145531, intron 4 of 39)	8257.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	5.2547599359161	5.56835903515971	5.32808196684531	5.04975154858933	5.30412942274139	5.36080320900121	-0.301408955276716	0.402058437443631	0.77787096574423
Merged-chr4-41713463-4	chr4	41712949	41713949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	68.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	5.91037255819154	6.14786134764388	5.81322247782329	6.23984353834551	5.73909326684887	6.11130747911822	0.117952441289186	0.718218806704579	0.927293456311605
Merged-chr7-19094642-4	chr7	19094162	19095162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190491)	TTS (NM_001190491)	118.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	6.37791869370138	6.40849044704506	6.39752952545038	6.62783327990192	6.57159835194235	6.68052203865681	0.369809770322248	0.153703772714273	0.522741090493305
Merged-chr5-124444791-4	chr5	124444283	124445283	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-716.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	6.46363403068095	6.45832422710551	6.32438658129491	6.41500029058686	6.62879929599421	6.28244802815958	0.0650266772398108	0.814814375627794	0.956370078970016
Merged-chr10-44679748-4	chr10	44679256	44680256	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221008.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.96292758964787	3.82250185838368	3.70144113939223	3.88440348979726	3.83231797740664	3.87735768198529	0.075239779092144	0.884996504718831	0.973538624783452
Merged-chr18-57577181-3	chr18	57576681	57577681	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	-24784.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	3.84096164743805	4.15335226504696	4.1480229498752	4.04933423263808	3.88666680406321	3.87868893196718	-0.334479875109171	0.511675302935136	0.841519675193282
Merged-chr7-24460006-4	chr7	24459508	24460508	+	938.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2475.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	2.96353608910602	2.85556150769192	2.93995481044552	2.71058745653544	2.84941988308336	2.95310846827114	-0.398731945595009	0.572610376059247	0.869896838396072
Merged-chr3-137954321-4	chr3	137953813	137954813	+	929.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	27236.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.45788188309966	6.60054371348467	6.33437418518496	6.24829999966096	6.10958765714333	6.14470305004052	-0.509303362925404	0.0665599567126719	0.33702433384945
Merged-chr11-86819416-4	chr11	86818945	86819945	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11785.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	5.56486234034848	5.75675620817024	5.91659429589595	5.68670013920919	5.88406457144436	6.28068898908127	0.387185200463964	0.253902825211628	0.651117231535132
Merged-chr9-21029591-4	chr9	21029090	21030090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010493)	TTS (NM_010493)	217.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	3.98609003235513	3.93976579285686	4.19290328634668	4.43285328890113	4.16588794864195	4.39078688713239	0.82136512190256	0.0862757901245326	0.389117889570281
Merged-chr2-84425310-4	chr2	84424790	84425790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018782)	promoter-TSS (NM_018782)	-24.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	6.70080983164296	6.70281674252793	6.62192021822563	6.45697093411426	6.63344049340276	6.66444739381611	-0.144844508520327	0.574610741432428	0.870801197922075
Merged-chr5-90364166-2	chr5	90363666	90364666	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	2019.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	4.14317242932402	4.10413061911494	3.9010009556003	4.36543415539681	4.06107124578272	4.17336581764922	0.403364303493745	0.411416151767821	0.783886678947056
Merged-chr2-45693869-3	chr2	45693375	45694375	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2730.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.87763402525135	4.85008784770732	5.08660422142546	4.76221122261234	4.47946181737382	4.60376751920838	-0.734881657513158	0.0713373813346535	0.350465892784664
Merged-chr13-5844890-3	chr13	5844389	5845389	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13203.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.49630000648599	6.76288675377198	6.55294782173762	6.26267746630064	6.47177163578276	5.96453187897548	-0.562093012000276	0.0600932954994432	0.317334704062808
Merged-chr11-70229087-4	chr11	70228583	70229583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007528, exon 2 of 9)	exon (NM_007528, exon 2 of 9)	715.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	4.64980595271273	4.1689799156522	4.62185413336785	4.86009749116068	4.73361770067986	4.43092731658285	0.476585276359336	0.302188804408503	0.698944434669152
Merged-chr8-46739583-4	chr8	46739154	46740154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008391)	promoter-TSS (NM_008391)	-91.0	NM_008391	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.34702291479153	7.48221069040083	7.43750310191724	7.35047914083488	7.55020779489216	7.21198575639169	-0.0526181676164918	0.825470824536584	0.958821343666982
Merged-chr5-35631400-4	chr5	35630902	35631902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42639.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	3.6393927640032	3.52021220956771	4.06121632395244	3.84476368759949	3.42072207450793	3.65460772956621	-0.345237005348154	0.564613403529601	0.86651662271215
Merged-chr1-165194485-4	chr1	165193964	165194964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-26.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	6.47460896194252	6.47003046504297	6.15394570430741	6.71119857484906	6.84610101756609	6.21537407410196	0.398930112236455	0.196765331468564	0.584746042932789
Merged-chr1-152622016-4	chr1	152621514	152622514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	3203.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.676984931076	6.37024555990225	6.52256697285891	6.23899980692832	6.55113964041637	6.19267269470512	-0.291675143026851	0.315672959612979	0.709905827661533
Merged-chr7-25281278-2	chr7	25280778	25281778	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-901.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	5.4357054850605	5.50556475254258	5.63822288407069	5.60025918185712	5.57668292365211	5.72579124662496	0.202754477752355	0.528590820447233	0.850585575598857
Merged-chr7-5051675-4	chr7	5051229	5052229	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026900, intron 1 of 1)	CpG	197.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	4.06320222196019	4.3240681065936	4.24967197126458	4.5357093215306	3.9898626007824	4.44706613464112	0.327339014392699	0.510945502627105	0.841230434419772
Merged-chr19-29419040-3	chr19	29418508	29419508	+	950.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	8089.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	8.05576547350282	8.01475858751005	7.74996784831393	7.9514281638918	8.24668423209579	7.48812691995433	-0.0103337968242538	0.970072322486535	0.993347985887136
Merged-chr16-36752166-4	chr16	36751671	36752671	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 21 of 21)	intron (NM_021301, intron 21 of 21)	32791.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	4.8664895720359	4.98011052231042	5.20500224882203	5.03072522114371	5.11333290634271	5.32789553192913	0.298071930475932	0.428683614897572	0.795420465213011
Merged-chr11-89024430-4	chr11	89023866	89024866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24963.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.28647292274666	7.18812495167598	7.09101656595751	7.24411202927347	7.47959483650028	7.02707447736054	0.119529577208457	0.638943002708324	0.897847437626511
Merged-chr17-81510878-1	chr17	81510378	81511378	+	632.0	f0_balb.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	227509.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.0938741429054	2.95839813729932	2.93429773686783	2.93323058754548	2.62475449682746	2.68695060201287	-1.24556436892612	0.0976952522114771	0.416863255133595
Merged-chr14-66219040-4	chr14	66218572	66219572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-5248.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.30195425110042	6.18379982901307	6.10044382254035	5.85073573273546	5.93992301823157	6.24351751379034	-0.325091190768884	0.277536883030282	0.674707488501667
Merged-chr8-83652556-4	chr8	83652028	83653028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018771)	promoter-TSS (NM_018771)	-150.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	6.45163108119037	6.21609847931866	6.17588189374458	6.17247873300088	6.16464550864367	6.17221088265116	-0.206020850831648	0.466318487782761	0.817498201823315
Merged-chr8-94802004-1	chr8	94801504	94802504	+	552.0	f1_balb.idr	Intergenic	L2|LINE|L2	-8449.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	2.48057292803343	2.76046197591526	2.71460528695348	2.75384848144603	2.80439324607605	3.02420736071338	1.07111226122485	0.164358217509103	0.538803820128337
Merged-chr10-81560489-4	chr10	81560065	81561065	+	857.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276288, intron 1 of 6)	intron (NM_001276288, intron 1 of 6)	1121.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	4.21281865139337	4.26629273834646	4.41720966551456	4.18600010324269	3.76584193151034	4.36103054648923	-0.500092216763142	0.328462757181073	0.720626901875831
Merged-chr8-83693941-4	chr8	83693448	83694448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	113.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	6.39985949162011	6.21231296571436	6.49489568265034	6.25537164098971	6.58544954286964	6.44798964911507	0.120484891458921	0.671082057159952	0.910289924720412
Merged-chr2-52872823-4	chr2	52872324	52873324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	14956.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.6236691145617	5.49408923943249	5.74001353166784	5.72470292504001	5.70824087108372	5.49941856967822	0.0738043010327822	0.819352174165355	0.957268403649969
Merged-chr6-120039817-4	chr6	120039314	120040314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	6.69231613162135	6.87230292411483	6.56686987669478	6.69360530736805	6.77772497853016	6.35897900491925	-0.140042419792866	0.616208633418159	0.88831406738493
Merged-chr9-107769703-4	chr9	107769198	107770198	+	850.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153191, intron 1 of 23)	intron (NR_153191, intron 1 of 23)	1304.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	5.69838002110796	5.61344588387231	5.70950612899206	5.92239857071557	6.22517837228903	5.82448139932358	0.610844112463244	0.052657278461301	0.293666677359781
Merged-chr9-106687498-4	chr9	106686932	106687932	+	890.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030730)	TTS (NM_030730)	-1480.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	2.6912624043592	2.77070365889181	2.93459045902922	2.68743719645521	2.47703444689886	2.83255276903353	-0.706184306762978	0.360789618170124	0.746938274913623
Merged-chr19-43521393-4	chr19	43520877	43521877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	3228.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	6.89695953344579	6.83787536670235	6.66632499514312	7.25154135732472	7.59781359657282	7.31767579888684	0.895036153934105	0.000445008561497402	0.00958288622802169
Merged-chr19-21599153-3	chr19	21598676	21599676	+	950.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 2 of 3)	intron (NM_025423, intron 2 of 3)	53615.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	3.38564725122703	3.27518640754861	3.27940674308788	3.21134628759072	3.15809888575623	3.05273711346017	-0.717992433785656	0.258618205680247	0.656162466533417
Merged-chr13-93192393-4	chr13	93191910	93192910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133905)	promoter-TSS (NM_133905)	7.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	8.08882775131411	8.48124575741822	8.24270582428039	8.22177669958939	8.2690184386518	8.22831209796765	-0.0605978737328575	0.785159958484847	0.947850129107983
Merged-chr5-64884410-4	chr5	64883905	64884905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48294.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	7.6227314834071	7.32092098566254	7.20484866175034	7.36238014925124	7.70973216740489	7.37979983251959	0.146469170053742	0.573003794957146	0.869934493236159
Merged-chr6-39054520-2	chr6	39054020	39055020	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	13066.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	3.94756389507832	3.71106272923808	3.76096133150847	4.04768458138334	3.78000688394998	3.88368022497101	0.292666883592822	0.578865003184169	0.872437129840066
Merged-chr13-58458996-4	chr13	58458504	58459504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55661.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.67398788024014	4.52762955827265	4.42883525955955	4.22116549036598	4.31489068198017	4.65778482970761	-0.380801731212228	0.399395942675578	0.775836059254103
Merged-chr8-94386386-4	chr8	94385892	94386892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022331)	promoter-TSS (NM_022331)	-37.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	9.02268062444017	9.36227780304561	8.66929380485056	8.84403601390712	9.11677963255127	8.60443790411177	-0.242847362029499	0.36234569085052	0.74782499303743
Merged-chr1-195131114-4	chr1	195130632	195131632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355061, exon 1 of 9)	5' UTR (NM_001355061, exon 1 of 9)	438.0	NM_001355060	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	7.72880275949816	8.07110529243407	7.77282910156929	7.55934929550923	7.7182829218852	7.65162258035097	-0.323323576116646	0.166083517424728	0.541194161193161
Merged-chr7-110164957-4	chr7	110164458	110165458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42899.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	8.0089021656039	8.20183638871807	7.61751913085962	7.8370407447551	8.31696916470454	7.82225500912191	0.068592925324829	0.803219886199398	0.953422605427866
Merged-chr3-141492167-3	chr3	141491659	141492659	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	26595.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	3.39007892139875	3.36811424161666	3.35775266344531	3.55701592548662	3.94548371521889	4.25387544340312	1.96748973715966	0.00133999988286901	0.0226531308926788
Merged-chr10-57448118-3	chr10	57447587	57448587	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38266.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	3.10092057173111	3.04788401320253	2.90337893559953	2.99547990630062	3.1431117701397	3.1581674984292	0.340720280494004	0.610999149162518	0.885853482314558
Merged-chr13-101801477-4	chr13	101801038	101802038	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33321.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.323584870371	6.13190576673634	5.44759497004372	6.08365282469884	5.93371697134923	5.57913087346531	-0.247606852828108	0.515109136485536	0.84337265078831
Merged-chr11-32489536-4	chr11	32489030	32490030	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	B4A|SINE|B4	34160.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	3.35281734427985	3.24169573036	3.269256699052	3.47681393526951	3.26643745438253	3.09740931710514	0.0156902121222491	0.980298903893854	0.995500659055379
Merged-chr5-20881593-4	chr5	20881110	20882110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	514.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	5.74696277669617	5.11059545569734	5.5863179576846	5.6125915996019	5.14222939707813	5.35960979424767	-0.239919343141309	0.539129918470696	0.855762428341879
Merged-chr16-91394242-2	chr16	91393742	91394742	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110498)	TTS (NM_001110498)	-11993.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	3.92573061999469	4.31554732689534	4.29233041060904	4.07674170199712	3.72228449776016	4.47858240205654	-0.183920164778868	0.73973633125576	0.934245371298156
Merged-chr7-29953975-4	chr7	29953411	29954411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178384, exon 1 of 6)	5' UTR (NM_178384, exon 1 of 6)	154.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	6.48400899182245	7.06221843661225	6.76304453793994	6.42441147761706	6.62355072320346	6.68162555328712	-0.340182716209697	0.244761338432194	0.642139659738491
Merged-chr5-18013443-4	chr5	18012943	18013943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	50873.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.76514730832469	6.59006639337854	6.27487909776883	6.32238083930839	6.69684659584103	6.37641734971206	-0.133717284941005	0.654588354242797	0.903872559164033
Merged-chr11-52046952-4	chr11	52046462	52047462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	42741.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	5.61623915601539	5.67936857633799	5.23677754762671	5.9486823811063	5.89706030556698	5.47292860213495	0.479666707973703	0.176670084424385	0.557127430636861
Merged-chr13-55339601-2	chr13	55339101	55340101	+	813.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-9871.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	3.10046240664344	3.05253928932533	2.99991523150636	3.28967034231628	3.42176269588052	3.19752540014629	1.10071705741964	0.0895937870073642	0.397744215403551
Merged-chr2-160047864-4	chr2	160047373	160048373	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	31220.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.72180387445333	5.22335949629891	5.73782432904069	5.32013064965246	5.31798739421416	5.56907694985473	-0.336853069484422	0.354734281210284	0.741848255752265
Merged-chr11-59902375-4	chr11	59901911	59902911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-19088.0	NR_130986	69854.0	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	5.73389819691152	5.7267369814558	5.65198537417095	5.35686118315149	5.60954404155528	5.25837643638016	-0.51683959228195	0.12391227641844	0.47114296729234
Merged-chr19-10376860-3	chr19	10376359	10377359	+	746.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12231.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	2.68609226452209	2.64109970425093	2.85551525630023	2.70495020320829	2.47488507386408	2.48982656616339	-0.939802816689586	0.233211817355881	1
Merged-chr1-195013808-2	chr1	195013308	195014308	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	3.77522900766621	4.04019935357564	3.77763810541742	3.49879505924513	3.48086936930569	3.84725148055432	-0.885866671721826	0.117956992258275	0.458660959485934
Merged-chr2-4461038-4	chr2	4460551	4461551	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	RSINE1|SINE|B4	60075.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.33237974890462	4.16822089402323	4.35124830163251	5.195348269863	5.7812791047459	5.12849917079686	2.58925249753397	5.24849975219591e-09	5.08994367576593e-07
Merged-chr10-21890533-4	chr10	21890047	21891047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	ID_B1|SINE|B4	8363.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.96578715422683	5.42777340024495	6.0014506799839	5.93481014566989	5.63100173159648	5.80624452239117	-0.044285983815133	0.898865130502625	0.976432549466174
Merged-chr7-141381423-6	chr7	141380844	141381844	+	777.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10816.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	4.09797802983527	3.92929689274975	4.2576612199584	4.1440635797344	3.90419465944119	4.19425601713304	-0.0437430421288503	0.929996368736592	0.98436656024861
Merged-chr1-136675932-4	chr1	136675427	136676427	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7469.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	7.89500578567705	7.96825291044214	7.54874821762459	7.89428690481225	8.14879918780924	7.64551432880149	0.138994172449381	0.589478530695958	0.876882582082885
Merged-chr11-96789166-4	chr11	96788697	96789697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007622)	promoter-TSS (NM_007622)	61.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	6.36614708299103	6.09801634576711	6.75941915402314	6.57655703098946	6.46163700114867	6.62086377969528	0.204927415296249	0.500828836357291	0.835260125938228
Merged-chr3-97265184-4	chr3	97264700	97265700	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-37836.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.26346084840784	2.92558862180923	3.14126344743921	3.36647799880652	3.5664245978047	3.39027968939029	1.35123591880903	0.040052297696168	0.249153079149428
Merged-chr11-69621979-4	chr11	69621463	69622463	+	925.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356469)	promoter-TSS (NM_001356469)	-89.0	NM_026991	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	5.89235565794008	6.17752840185907	5.94332761976914	6.2984416012369	6.40385292844796	6.27047598081032	0.527848757176289	0.0684157408412561	0.342173286284741
Merged-chr4-35980800-1	chr4	35980300	35981300	+	903.0	f0_balb.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-135596.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.07878716749113	3.25879227170465	3.73893580157654	3.00369951517088	3.02870760737858	3.08919697812223	-1.43323069907842	0.0408468419867447	0.252004450806929
Merged-chr18-53862022-4	chr18	53861496	53862496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-117.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.43350405439211	7.58285307276911	7.04730928866935	7.172167164844	7.18241870632575	7.05036311078101	-0.364475116013747	0.160941990825786	0.533655406039239
Merged-chr4-134921506-2	chr4	134921006	134922006	+	613.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2119.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	5.69094654520989	5.62769020261813	5.88684454670764	5.82664073800235	5.99106657818625	5.69503656174225	0.220704897842302	0.484711461933153	0.826998120210253
Merged-chr4-40700923-2	chr4	40700423	40701423	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	1993.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	6.06251977714086	6.13714047736755	6.00980911897782	6.12077335365575	5.93088336254005	6.33788862872799	0.0920513788886325	0.758204335639092	0.940104678746179
Merged-chr4-134923032-2	chr4	134922526	134923526	+	737.549988	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-599.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	8.08745474369963	8.01859502823904	7.8239997571795	8.13188332392394	8.48397333296847	8.02447285686886	0.353660583242495	0.141278569888001	0.502077389631641
Merged-chr9-16216463-4	chr9	16215955	16216955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	161776.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	6.3475758868275	6.75872491385561	6.30200466761569	6.58078390922776	6.57471106152906	6.5516550932616	0.11642188106206	0.683839021383686	0.915511605278893
Merged-chr3-15126392-3	chr3	15125897	15126897	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	155196.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	3.8862806068107	3.95729058830386	4.11816396074266	3.52029270049471	3.74351990516232	3.75991792378626	-0.984180856757701	0.0682150679312414	0.341659453091987
Merged-chr19-5273134-4	chr19	5272656	5273656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153129)	promoter-TSS (NM_153129)	-37.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	7.02863971271663	7.01063732140185	7.17406546174547	7.29344985643591	6.89274235877328	6.85675194215752	-0.0553962437930636	0.833529066134206	0.96108264611081
Merged-chr2-45234877-2	chr2	45234377	45235377	+	807.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117435.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.0519038908865	4.7398941551919	4.97329242091468	4.69410097794534	4.54115043433887	4.78566825522301	-0.589227483104344	0.146394490304056	0.510331229700642
Merged-chr9-58552252-4	chr9	58551742	58552742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11302.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.65257990071227	4.49458048376169	4.3298575576577	4.36495429057073	4.12688240309374	4.35268835298591	-0.599497727619451	0.188154790261102	0.573574205225435
Merged-chr12-52306380-2	chr12	52305880	52306880	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	174229.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.26035182974913	2.96758079482346	3.13709991165397	3.41260567254088	3.05640296899494	3.32514937464639	0.594545706369338	0.371946221237869	0.755920599305374
Merged-chr11-76846320-5	chr11	76845834	76846834	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007754, exon 1 of 21)	exon (NM_007754, exon 1 of 21)	674.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	5.76808393222919	5.55569592593349	5.38561545532945	5.47839045288234	5.31649869405107	5.35416484701083	-0.392004684894433	0.250141761472851	0.647315907465105
Merged-chr3-126831618-3	chr3	126831114	126832114	+	848.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	111772.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.65988342942934	2.71494891480021	2.8215561926711	2.69086402520057	2.63363714746665	2.8937672864788	0.0400462811991376	0.956695013513253	0.989887454023164
Merged-chr2-166657326-3	chr2	166656829	166657829	+	947.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56503.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.81049067786577	4.77482594611008	4.48777569411377	5.09422192014463	4.70972843839163	4.77164578026685	0.365162880289764	0.385948926359929	0.766792537536281
Merged-chr6-136661231-11	chr6	136660721	136661721	+	884.7045289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	672.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.83321204511145	7.04249558604726	6.24032497989474	7.95160502182306	7.9897398972875	7.25989053513825	1.50973691952147	8.45697167529017e-06	0.000346200870700818
Merged-chr10-8844011-3	chr10	8843509	8844509	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	42061.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.8296876195008	4.92379941904967	5.10637830217494	4.70112068536932	4.54739211612591	4.75316512409379	-0.659589769888383	0.0990147860136287	0.419577424863619
Merged-chr2-130449393-2	chr2	130448893	130449893	+	663.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	-885.0	NM_008980	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	3.2198049205217	3.28253558235864	3.26483754721404	3.14491698049073	3.02164930823813	2.91222537482423	-0.980722583530676	0.140429451295469	0.500760820920022
Merged-chr10-119063223-3	chr10	119062737	119063737	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12738.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	7.96436141365963	7.95876973914493	7.35919892066781	7.78869867872367	7.75521042762182	7.82039509337441	-0.0198881068620105	0.938878500693324	0.986550175078409
Merged-chr7-135700582-2	chr7	135700082	135701082	+	597.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	15797.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	2.78342950991634	2.80769518062926	2.83202628144305	2.91234427915032	2.75352096871785	3.29843524459104	0.926181469283393	0.20812856786368	0.599041414336639
Merged-chr10-68735888-4	chr10	68735397	68736397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	12151.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.53333261804231	7.40738698798188	6.97016352896154	7.65222564724846	7.83815882195666	7.39069210422964	0.454818721560569	0.0969951072794717	0.415291184856966
Merged-chr2-61712782-3	chr2	61712269	61713269	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 1 of 11)	ORR1B2|LTR|ERVL-MaLR	1075.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	4.70944965169006	4.44665272414243	4.3446839163236	4.68613335606684	4.52065051403006	4.16433590261011	-0.0805145989230649	0.864048725288807	0.968269312109804
Merged-chr6-125127993-3	chr6	125127495	125128495	+	927.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3888.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	3.99884070012861	4.0301559629087	4.31376277579903	4.27774829486697	4.73421184123204	4.42469526660322	1.0392160118506	0.0305122612461846	0.211237560011027
Merged-chr11-59449961-4	chr11	59449434	59450434	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037992)	promoter-TSS (NR_037992)	100.0	NM_001356454	67826.0	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	4.67444059184513	4.6590140991282	4.70628096752112	4.25794307196153	4.50962590511097	4.73405333532407	-0.414478672857526	0.338695152584039	0.728588578553954
Merged-chr17-34313102-3	chr17	34312558	34313558	+	881.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	MTC|LTR|ERVL-MaLR	7191.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.97623220328737	4.5192620798428	4.78932839659929	5.69848544112659	5.55030172801763	5.2648291003097	1.54422940613692	9.35858767801515e-05	0.00268150607270071
Merged-chr9-65538367-4	chr9	65537887	65538887	+	957.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41700.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.23266071586573	6.20863039465628	6.31307842948405	6.89138756411932	6.78225458375743	6.85860590857234	0.953480507404835	0.000225550984122995	0.00551989596673712
Merged-chr7-66118395-2	chr7	66117895	66118895	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	8880.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.04816395162555	4.17546019696429	3.84983928216983	4.03756810108304	3.93345678232665	3.81252541336817	-0.312924849983544	0.541452787707505	0.856839001867185
Merged-chr15-59524234-4	chr15	59523745	59524745	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-124409.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.97313406552983	4.66699746731188	4.71083569031788	5.06067485881192	4.59821987074007	4.69597240063436	0.0130502722615902	0.975520850280409	0.99451278391223
Merged-chr5-110396769-2	chr5	110396269	110397269	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 4 of 18)	intron (NM_001142642, intron 4 of 18)	-9642.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	3.76778444114292	3.46187727032817	3.9328794989341	3.31700811897285	3.68977183581544	3.95555703471369	-0.180869181793789	0.771297421292999	0.94360155013597
Merged-chr13-85359368-4	chr13	85358862	85359862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69876.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.8285083356555	4.81268522073006	4.61594193266222	4.57064721578559	4.40433731295832	4.55717577716561	-0.614882174895267	0.138626032347261	0.497532561229765
Merged-chr12-41313605-4	chr12	41313118	41314118	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172439.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.53551262223538	3.5195793574186	3.43879398511382	3.49506002136876	3.3965968852362	3.61703173553988	-0.00758961639019292	0.989473774545555	0.997611022725407
Merged-chr17-73926564-2	chr17	73926064	73927064	+	883.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 7 of 36)	exon (NM_011723, exon 7 of 36)	23632.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.54508519718509	4.33100742821773	4.34380259129783	4.14362666683303	4.27569341314406	4.41088735949089	-0.363182644937782	0.424574545373616	0.792697196836987
Merged-chr7-80800954-2	chr7	80800454	80801454	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 1 of 37)	B1_Mm|SINE|Alu	2377.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.40655324446135	4.38156128473817	4.50967783249212	4.35778463269963	4.68245401882314	4.83928448865833	0.511640281127299	0.245212151984635	0.642381314494918
Merged-chr5-32140306-2	chr5	32139806	32140806	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3834.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.00623961170018	5.24059760176254	5.52507243929177	5.29445093033975	5.10373459767272	5.39435766644301	-0.00359748342987473	0.992360713411527	0.998523796268552
Merged-chr17-25131273-4	chr17	25130752	25131752	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2139.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	5.00750010060899	4.74365339712895	4.98998588508037	5.41377327051133	5.77784582943406	5.23349845330881	1.20732730348044	0.00160799943207962	0.026122299247263
Merged-chr11-75679941-4	chr11	75679436	75680436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277221, intron 1 of 1)	intron (NM_001277221, intron 1 of 1)	677.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	8.32855289202936	8.63661131564597	8.30137369905258	8.2910429672455	8.50825457989407	8.27545386808135	-0.095967850296592	0.670587290161343	0.910040565608916
Merged-chr3-89861968-2	chr3	89861468	89862468	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	30598.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	5.58040637497267	5.8672322785814	5.7772379833517	5.78227983657157	5.77763118276251	5.76231145185872	0.0499317020604096	0.872962175103569	0.970349288189719
Merged-chr2-75793303-2	chr2	75792803	75793803	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38874.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.55849152877157	5.83959842607939	5.77705331067918	5.9210423747957	6.02916843117394	6.05066975402328	0.481546076074565	0.116401025422626	0.455552256402139
Merged-chr1-120031779-2	chr1	120031254	120032254	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	24774.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	2.84778447777845	2.50085570253837	2.72205986514018	2.80630971814423	2.68268639870515	3.03285311920136	0.746681365903529	0.335692024479669	0.725819493689421
Merged-chr10-118864471-3	chr10	118863946	118864946	+	592.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	4457.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.58858002095727	4.15174251525325	4.73892193165868	4.28596977444376	4.31132020346193	4.73255767407513	-0.14630606832389	0.763982802916895	0.941867765029099
Merged-chr7-82811228-4	chr7	82810729	82811729	+	989.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55585.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	4.60805774316714	4.51699362616581	4.41703815414372	5.13420099588893	5.02277426685105	4.75129049948219	1.0662242765675	0.00975946424724108	0.0988675325510933
Merged-chr13-34279144-4	chr13	34278686	34279686	+	836.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	65996.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.72371655706797	5.85276828438893	5.892284665902	5.62183682972452	5.59342063997422	5.53599389986187	-0.43022688786895	0.167405401446469	0.543249820348575
Merged-chr5-30840900-4	chr5	30840416	30841416	+	948.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-20891.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.33918436491514	4.3900509857476	4.39016751002652	4.62126509509549	4.45398286859652	4.27430356920366	0.231694037159622	0.600874651443471	0.881855262262798
Merged-chr3-96239618-3	chr3	96239116	96240116	+	787.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	-474.0	NM_178216	15077.0	Mm.422680	NM_178216	ENSMUSG00000093769	Hist2h3c1	BE691662|H3-615|H3f2|Hist2h3ca1	histone cluster 2, H3c1	protein-coding	5.99481088374065	6.15294043428796	6.34631363185506	5.54932478005357	5.59995871111294	5.94636588127914	-0.822984794542598	0.0101293690530398	0.101315607665024
Merged-chr3-104865071-4	chr3	104864578	104865578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	572.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	7.95021537415106	8.2885591688072	8.30004744444073	8.00747797028095	8.11113732167894	7.88838095756496	-0.252630830294685	0.272027627972807	0.669528049151568
Merged-chr19-55702080-2	chr19	55701580	55702580	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	124.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.04160917008587	7.14927065943519	7.53789064204801	7.00011990302349	7.07933161525732	7.17971577437826	-0.249834558017814	0.341641161885861	0.730935106878357
Merged-chr5-136979913-3	chr5	136979413	136980413	+	717.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6991.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	3.1899370929858	3.33117372722648	4.0154291893655	3.33643802181004	3.33636112482137	3.5348523027457	-0.555604175768073	0.409908003404678	0.783037226945994
Merged-chr17-37271004-4	chr17	37270469	37271469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 2 of 7)	intron (NM_013819, intron 2 of 7)	735.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	8.63450165053665	8.88700823434576	8.31808656850064	8.74359890706476	9.09735963876505	8.48830078566274	0.230456157169886	0.386274074486251	0.767035610573276
Merged-chr8-104108073-5	chr8	104107589	104108589	+	783.82666	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	(GA)n|Simple_repeat|Simple_repeat	-2216.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	4.36096362407715	4.32544942454861	4.30128141156851	4.09707595432191	4.11633343271995	4.09034294099094	-0.634980337478042	0.167912011889206	0.544130536211812
Merged-chr10-96618916-2	chr10	96618416	96619416	+	627.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	1915.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.49720593722346	6.45759288378111	6.36537282023801	6.3995854074216	6.81464276558748	6.34592456811979	0.173220155947295	0.549940796126924	0.860509903840749
Merged-chr15-66748602-2	chr15	66748101	66749101	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	77831.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	3.75428699794828	3.54423318999282	3.81298976156243	3.34539775245956	3.03970653007841	3.30193700623958	-1.8872420458165	0.00324543569263203	0.0447392665859055
Merged-chr13-34875499-4	chr13	34874976	34875976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013830)	promoter-TSS (NM_013830)	-18.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	7.77064911116124	8.01899465402099	8.11723309130176	7.84436558325663	7.83290892593164	7.96382383522789	-0.135095999064058	0.549888486186747	0.86050509437616
Merged-chr1-88309309-2	chr1	88308809	88309809	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 2 of 26)	Lx5c|LINE|L1	2597.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	4.2505493959032	3.861137843059	4.32246678240104	3.95733180777653	3.70353658842253	4.26503744063015	-0.489879997256881	0.368376885823981	0.753377179266623
Merged-chr10-86124337-4	chr10	86123827	86124827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 7 of 13)	intron (NM_013722, intron 7 of 13)	28473.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	5.43058896634752	5.66592193815871	5.54962123307068	6.42106159426088	6.64703750897596	6.27762335111402	1.5769684562322	2.80960424150667e-07	1.7657216746774e-05
Merged-chr17-34631590-2	chr17	34631090	34632090	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_030890, intron 2 of 3)	intron (NM_030890, intron 2 of 3)	1904.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	5.58689027288467	5.46898648967431	5.7234807031086	5.58560403043974	5.3265094570745	5.60362444434898	-0.166392732417364	0.619051887177443	0.889605366990958
Merged-chr15-80012831-4	chr15	80012324	80013324	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	CpG	1984.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	6.51472156846364	6.55460266162997	6.5924967371332	5.8422774482605	5.61991094492712	5.90391740843263	-1.30958156176452	5.20090815769735e-06	0.000229214600628009
Merged-chr7-101074694-4	chr7	101074111	101075111	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-34164.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.59084283224216	4.39497808911885	4.44198531697045	4.24813165029119	3.87439464545	4.24618284738207	-0.962287022691983	0.0443883262474369	0.265373175053652
Merged-chr2-84479255-4	chr2	84478763	84479763	+	930.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-2488.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	3.93354482812736	3.92573301549886	4.06607896448205	4.07503531423011	3.91009760829512	3.72733562465078	-0.168136148404236	0.743954394099549	0.935839225123366
Merged-chr1-9631182-4	chr1	9630690	9631690	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015470)	promoter-TSS (NR_015470)	-98.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	4.32751713433977	4.22117816780359	4.36979002001059	3.93196274682484	4.18927382873611	4.47633997883875	-0.255465826882491	0.599331673896428	0.88094101506075
Merged-chr3-95645455-4	chr3	95644959	95645959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13262.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.36306871685601	6.16562920874332	6.70981627289233	6.56668612724149	6.33971296879293	6.42256180672105	0.0389880633549595	0.895650773059156	0.975665889379756
Merged-chr15-26359034-4	chr15	26358528	26359528	+	916.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	49980.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	2.53895674964684	2.5646395239858	2.75082979430529	2.36123879882647	2.64430476712769	2.64314854682596	-0.345521926650237	0.668513229202192	1
Merged-chr4-150509273-4	chr4	150508779	150509779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 9 of 22)	intron (NM_001085492, intron 9 of 22)	142895.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.43107985711374	6.52147370535865	6.41731013580743	6.20813147642144	6.46863065349873	6.24043625509013	-0.228199639983445	0.408555505161795	0.782163677806636
Merged-chr13-24761521-4	chr13	24761028	24762028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 1 of 6)	GC_rich|Low_complexity|Low_complexity	409.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	7.40381286131854	7.26634444965809	7.55769450393379	7.52694956973802	7.73500251980148	7.47629889060681	0.265546153649969	0.264291354440099	0.662221571944713
Merged-chr14-31409621-2	chr14	31409121	31410121	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	8056.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.01824984665922	4.94656993568244	5.49167779592044	5.27712295325075	4.72638438416196	5.42014545655823	0.000198278976783054	0.99963359126159	0.999920050950963
Merged-chr17-50185322-2	chr17	50184822	50185822	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	5175.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.72058236858478	2.61280344856294	3.03423137935476	2.5834608034757	2.70610094481501	2.69950409225565	-0.68863797943975	0.371115561453966	0.75531854434738
Merged-chr10-67009993-4	chr10	67009494	67010494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	4919.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	6.61940083870916	6.72767969903532	6.40525956905971	6.69932241484081	6.92313196790712	6.36452470680547	0.154587850045395	0.597474719541591	0.880433364120803
Merged-chr3-88396033-4	chr3	88395524	88396524	+	950.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025928, exon 4 of 5)	exon (NM_025928, exon 4 of 5)	-11558.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	3.71250534002049	3.62140240321128	3.90277441947105	4.16616712241271	4.10840900830209	4.37279387581838	1.44168367191963	0.00513650385114801	0.0623211158422752
Merged-chr5-135184664-4	chr5	135184163	135185163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2660.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	5.29434456792765	5.35159728330556	5.7991136785792	5.62462386996864	5.64423572491938	5.63590431209819	0.280882091400503	0.416408760990957	0.787340667542254
Merged-chr11-68473651-2	chr11	68473151	68474151	+	818.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-29368.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.39037342478817	4.2233785009322	4.49763408927927	4.32552362254901	4.02245092471239	4.483961665312	-0.239037284345406	0.615820387791833	0.88811014762473
Merged-chr3-96557280-2	chr3	96556780	96557780	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-677.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	7.54746920492149	7.46384433518257	7.70282295962695	7.77577813098567	8.30463693170631	7.9993540142575	0.687864662099908	0.00576531509614439	0.0677284114810084
Merged-chr15-64095412-4	chr15	64094893	64095893	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-34945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.8556378138545	4.97618623533865	4.98562858511839	5.2698065984252	5.13019153833349	4.7373426337845	0.292868051288763	0.457903946284792	0.812653760530339
Merged-chr8-123041681-4	chr8	123041178	123042178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045268)	promoter-TSS (NR_045268)	606.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	8.08409929781953	8.04454951154226	8.15401022235987	8.18771549919242	7.94655562830459	8.48826282950986	0.179679755289966	0.452243299419806	0.80933460446826
Merged-chr6-128438694-4	chr6	128438202	128439202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	-46.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	6.53093472882719	6.81753287907233	6.55913407172848	6.47806658277173	6.24524361148856	6.21621013825716	-0.533553854844554	0.0568963278389715	0.30754101178118
Merged-chr7-81789483-4	chr7	81788994	81789994	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026077)	promoter-TSS (NM_026077)	-41.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	5.92598562769137	5.89000045046961	6.11015863577137	6.11862345742068	5.91212618807942	6.2303244869641	0.195455721150167	0.51556524632755	0.843773907722411
Merged-chr11-115196944-1	chr11	115196444	115197444	+	572.0	f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	9457.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	3.21279020153654	3.3516613895897	3.99481316471106	3.74718468303614	3.40126237511054	4.44714145663063	1.09885604769571	0.324224942522181	0.717324268869843
Merged-chr1-151661137-4	chr1	151660625	151661625	+	798.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	89752.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.39851454316556	5.18914560385176	4.86181208518186	5.01597718749796	5.04153688473186	5.11457883222409	-0.261541759071166	0.495969459467004	0.832834734891234
Merged-chr2-45100186-5	chr2	45099636	45100636	+	844.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	10141.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.74925000428133	7.05800045403038	6.80472650941525	6.86867538490289	7.23823600447758	6.90808428164214	0.218174858565954	0.419224923683927	0.788866040613588
Merged-chr8-108393067-4	chr8	108392563	108393563	+	807.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191614.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.61561498966613	2.54502250243629	2.87275169525579	2.81783825785459	2.68009770782739	2.82721858254299	0.508464645263372	0.499593567166051	0.834602951184959
Merged-chr1-152535133-2	chr1	152534633	152535633	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	90084.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.39147479425019	5.10995342733179	5.5322008743701	5.72134393929636	5.22542491580935	5.56721793973796	0.323195143259946	0.383465180791925	0.764932855957392
Merged-chr2-117842561-4	chr2	117842075	117843075	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	20647.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	4.97738391213795	4.95303968567926	5.0601884847783	5.1288785198869	5.34459799374995	4.90450894135642	0.335236127226684	0.376960503303489	0.759544012952265
Merged-chr15-100605142-2	chr15	100604682	100605682	+	731.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-5198.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	6.87638292673455	6.88927889393897	6.50044073040006	6.56853108478048	6.67094371822442	6.25626088390137	-0.402334270391536	0.16295532936804	0.536402683996197
Merged-chr7-143686312-4	chr7	143685814	143686814	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	-439.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	5.77586528656328	5.98209968972784	5.96310216163321	5.70648771743092	5.6362789804772	6.045518178641	-0.201804534038503	0.527684824081975	0.850108008834301
Merged-chr1-191166449-4	chr1	191165957	191166957	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1640.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	3.11758414780243	3.19970857355878	2.98619190262121	3.30981203457142	3.15270655700408	3.18203104553093	0.457922822495341	0.481704719018104	0.825198998835643
Merged-chr8-119818729-2	chr8	119818229	119819229	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	21850.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.27507941914864	3.12789871020403	3.65621532890133	3.55431617223226	3.18381071607508	3.47254749723431	0.170876400807767	0.793614771639759	0.950530707771746
Merged-chr2-180272487-2	chr2	180271987	180272987	+	739.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	978.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	2.76226226315442	2.59202750705417	2.59931489180132	2.91348346862823	2.51773872277385	2.80220255480756	0.518537784541881	0.50673551894917	0.838542828803423
Merged-chr14-29966234-6	chr14	29965820	29966820	+	917.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-2060.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	5.20623858677789	5.51535486094638	5.72782008978935	5.90170958849714	5.6781749200241	5.90862350485125	0.62493545768506	0.0680887104462219	0.341417536171971
Merged-chr11-104549759-4	chr11	104549261	104550261	+	874.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	859.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	8.37982990929611	9.08867841313434	8.46138339715927	8.45737157356519	8.83281643211442	8.3760946020596	-0.158331568785064	0.573472438100122	0.870156136738611
Merged-chr7-55842248-4	chr7	55841743	55842743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164661, exon 1 of 32)	5' UTR (NM_001164661, exon 1 of 32)	172.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.96107328587873	7.10659835064248	7.43847722324515	7.19334017842672	7.07406935246583	7.40581209755379	0.0735526299190232	0.781994414047582	0.94634558043998
Merged-chr3-52338800-2	chr3	52338300	52339300	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	70463.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	2.52597385586487	2.82785994130983	2.6056338637634	2.71160192288571	2.68961708556725	2.86581868707631	0.485158057657364	0.527437395152607	1
Merged-chr14-60911001-4	chr14	60910549	60911549	+	839.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126483.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	4.420411055071	4.48517189652991	4.67434724060715	4.59446539566522	4.81576728205091	5.36988053219799	0.99409850571969	0.02896057150878	0.204183953645874
Merged-chr6-83652215-4	chr6	83651713	83652713	+	945.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	3903.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.66163889290651	7.03030364483626	6.92452430033991	6.94157227895461	6.90169965617416	6.35229527866368	-0.171831852100368	0.56298010698749	0.865755360453189
Merged-chr14-73257532-3	chr14	73257034	73258034	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	19643.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	4.04727081067284	3.79082865173822	3.82328770272468	4.07575732970281	3.91060178542782	3.99520443271921	0.296053925503415	0.56202651038972	0.86560636450104
Merged-chr2-79339262-3	chr2	79338765	79339765	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 10 of 12)	intron (NM_001048176, intron 10 of 12)	83839.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	4.68123856053027	4.60434196756897	4.4400418607169	4.97125013102219	4.98782372091265	4.50996302428137	0.617563994197558	0.152000284914596	0.519858592920945
Merged-chr7-127935528-4	chr7	127935012	127936012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 10 of 15)	exon (NM_001319147, exon 10 of 15)	-5399.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	5.40718431652795	5.1011322888826	5.47387735254013	4.64768891159577	4.94139546418989	5.39987256529709	-0.635063774569501	0.129384878070601	0.481155617184292
Merged-chr5-121381011-2	chr5	121380511	121381511	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	B3|SINE|B2	4398.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	3.03980421751833	2.72276325315134	2.98806925973911	3.04928975100265	2.64677066095532	2.75042139657919	-0.468534040134414	0.537389973539599	0.854451290191145
Merged-chr4-148586812-3	chr4	148586307	148587307	+	993.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-4706.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	4.32480263875141	4.29731868279924	4.24080147085806	3.7201394731812	3.53587421741816	3.88181606848614	-1.8302806159119	0.000496950325745738	0.0104514737754673
Merged-chr11-19926129-4	chr11	19925644	19926644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	1702.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	8.54937209846513	8.71464202292792	8.20864912634492	8.03411660902238	8.26963723276765	7.95831377461792	-0.579111917325372	0.016997385695309	0.144879990671509
Merged-chr7-59232120-3	chr7	59231648	59232648	+	734.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	3398.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	3.38509570671353	3.14158349195936	3.43205701250277	3.0292954541777	3.36484970648347	2.97698794564642	-0.733254254633668	0.293395656457802	0.690272451226872
Merged-chr4-129877522-7	chr4	129877033	129878033	+	968.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28693.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	7.45579573452928	7.53310236751007	7.48233269687177	7.69974059430451	7.72405058986477	7.81930799319744	0.371065609463557	0.0888367255302594	0.395740892447754
Merged-chr14-74937094-4	chr14	74936577	74937577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	MER44D|DNA|TcMar-Tigger	10800.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.61888374321687	5.43366843125876	5.04154149946299	5.62503975250318	5.38427024745618	5.41966003691903	0.153314414048992	0.676725239667411	0.912549881054299
Merged-chr2-29678744-4	chr2	29678235	29679235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	59015.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.4007215697684	4.8082480955938	5.0592442342023	5.10672870135268	4.89427610472299	5.08952812218309	-0.184917031673171	0.646583375360599	0.90100465546023
Merged-chr7-81921806-4	chr7	81921347	81922347	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013886, intron 1 of 5)	intron (NM_013886, intron 1 of 5)	12612.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	3.14782163987033	3.03860308214538	2.92236982239268	3.17866043814315	3.0271986489569	3.17815862194502	0.365284117660609	0.583477327228968	0.874062789752135
Merged-chr2-60172799-4	chr2	60172298	60173298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37138.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	5.29291216517399	5.03756990970818	5.12568666839208	5.03920460535437	4.73657829835867	5.12349981509731	-0.409710129336048	0.287611082716739	0.684950238953412
Merged-chr4-155187313-4	chr4	155186813	155187813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	35222.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	6.1259935124705	5.88105200745096	6.02622357733047	5.7119364153064	5.8548629208671	6.32509209194772	-0.0603961431921273	0.854939758563205	0.966038421653227
Merged-chr7-19085296-2	chr7	19084796	19085796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	1447.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	7.15188605542453	7.01541409471456	7.51112417027443	7.99324589239236	7.80901058771831	7.68026396110702	0.879673442003974	0.000576382125561113	0.0117519245047021
Merged-chr6-54668041-3	chr6	54667450	54668450	+	850.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-13674.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	5.01904242350308	5.21685610020499	5.17422397027889	4.68021114248112	4.68539722091982	4.78238440274737	-0.941688384566163	0.0138556379277395	0.125876178697603
Merged-chr18-46179425-4	chr18	46178923	46179923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 4 of 9)	intron (NM_178872, intron 4 of 9)	19395.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	4.38732355419809	4.90515694585976	4.43875682559894	4.52126923220196	5.00037728808794	4.94499280871897	0.534485983265803	0.248288593415895	0.645445615702094
Merged-chr19-3933613-2	chr19	3933113	3934113	+	986.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1573.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	3.93094109996968	3.58570184276585	4.28988078993776	4.6137509842925	4.30078139997589	4.4417695601528	1.38658154762527	0.0104038944963945	0.103296355614923
Merged-chr7-140058200-2	chr7	140057700	140058700	+	929.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9112.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	2.15303909534807	1.98765202369065	2.15034476910359	1.88557619705325	1.79141848358877	1.81462444146036	-2.54537922606684	0.0207449077040684	1
Merged-chr8-104099179-4	chr8	104098669	104099669	+	872.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131138, intron 1 of 2)	B3|SINE|B2	-2456.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	2.82825197556552	3.10281418060346	3.03594165586011	2.94526372543427	3.00897974314402	3.04940440551604	0.0310974506337871	0.963705184744701	0.991124145615921
Merged-chr5-139736413-4	chr5	139735914	139736914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174850)	promoter-TSS (NM_174850)	-81.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.85596434463432	5.40806018511587	5.55602460092972	6.12727414989758	6.21811454197847	5.70723800754266	0.751242259500821	0.0291461698272163	0.20503842568338
Merged-chr3-106545052-2	chr3	106544552	106545552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	-1906.0	NM_001357819	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.403374290757	6.46914522528036	6.37773993767303	6.95113038852981	7.01212194877825	6.41816554216073	0.6550107799943	0.0237902565402437	0.181143820113525
Merged-chr16-91013147-2	chr16	91012647	91013647	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026110)	TTS (NM_026110)	-1839.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	6.03022975311064	6.45415480383479	6.25310989449308	6.0709167223693	6.12103865021746	6.370270906082	-0.122945933872663	0.68427134686325	0.915825160524325
Merged-chr8-117134051-3	chr8	117133570	117134570	+	808.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163028)	TTS (NM_001163028)	-24065.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	2.6924401315623	2.75776077467924	2.93254375282613	2.97276807698458	2.91391576986088	2.94575839353157	0.757118056541699	0.283806812989474	0.68148750934452
Merged-chr9-57653131-2	chr9	57652631	57653631	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	500.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	7.30431228001534	7.31474263049529	7.51801806208975	7.47114764767703	7.533059015013	7.11176386950398	0.0245738887448859	0.921801689712708	0.982542868764899
Merged-chr6-73248497-4	chr6	73248015	73249015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	10.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	7.57405449421849	7.72479220857546	7.37485622155351	7.83783554420638	7.70225781204268	7.30339015290177	0.10127529162208	0.696758982936907	0.919600673120789
Merged-chr6-38552103-4	chr6	38551610	38552610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170848, intron 1 of 8)	CpG	776.0	NM_001170849	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	8.61421751058248	8.27829480409307	8.1280085297866	8.483142118075	8.45683104508283	8.2969531450526	0.0764367307250417	0.743806203406024	0.935808433727598
Merged-chr10-83635438-2	chr10	83634938	83635938	+	625.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	RMER20C_Mm|LTR|ERVK	13226.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	4.66391509854467	4.86884356295391	4.72013082462101	4.78867206670246	4.70253232028184	4.66560560830543	-0.0828123886861556	0.836187037829275	0.961957873656463
Merged-chr16-32160627-2	chr16	32160127	32161127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	4967.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	4.84909468053301	4.97104750450865	5.16667370395831	5.22875074057866	5.03010704720386	5.54311704509139	0.577482535055954	0.137049626002132	0.494599802795534
Merged-chr2-143838114-2	chr2	143837614	143838614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	25059.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	2.80649146027846	2.789392725811	2.87056808551614	2.73715759797775	2.55738269053474	3.0005591619234	-0.257866497856535	0.732016131975996	0.931655063903171
Merged-chr10-58350829-4	chr10	58350368	58351368	+	961.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-1095.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.11833534268286	4.57184495169075	4.84178846595565	5.27830679413515	4.9309845853728	5.28208002373577	0.642006908675736	0.123032096745228	0.469254432800556
Merged-chr11-101700579-2	chr11	101700079	101701079	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32377.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	2.9416138148749	3.1759832403636	3.17794189825182	2.87801800825	2.86620615263704	2.7671203770812	-1.2546290393526	0.0792152698296653	0.372058242890177
Merged-chr10-25411602-4	chr10	25411093	25412093	+	839.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	3225.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.0755351826535	5.17696870698387	4.92255049246466	4.91625878802307	5.00627750218611	4.95089641758278	-0.235275086436487	0.528364959003491	0.85053360857083
Merged-chr12-73715182-2	chr12	73714682	73715682	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	130386.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.69021160919304	5.10816441302595	4.89344954731509	4.19212002150545	4.22656743705241	4.20696215213699	-1.74846333245809	0.000100407556269482	0.00284464145116482
Merged-chr10-82953633-4	chr10	82953113	82954113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-31884.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	3.76561293988866	3.55539046839781	3.63957267944053	3.69147938924912	3.58590170281516	3.48842868749977	-0.218951847321507	0.696065176229064	0.919291538728398
Merged-chr2-26360446-2	chr2	26359946	26360946	+	938.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-899.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	5.08054976505871	4.87083611029488	5.01822441334175	5.09008598495491	4.85986198183938	5.01291730108501	-0.0110330117297364	0.97673844426474	0.994751152290718
Merged-chr9-118669936-4	chr9	118669430	118670430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	MER2|DNA|TcMar-Tigger	-41762.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.30041580306411	7.02949073135199	7.0684682770212	6.96463969415029	7.1602255000992	6.99221307544823	-0.142466549472181	0.567663229637917	0.868226421552338
Merged-chr8-104383716-2	chr8	104383216	104384216	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	12091.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	6.27412344829828	6.58573171129802	6.79784832572454	6.54533362136744	6.4495948868844	6.39808038802401	-0.152129208896641	0.597245708933416	0.880302510795789
Merged-chr6-5509972-4	chr6	5509479	5510479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13701.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	6.88747330447308	7.50188872656038	7.31537727355351	6.14028530696574	6.35934465920055	6.8086705737372	-1.24225754041185	9.5496870304316e-05	0.00272874436273404
Merged-chr9-3404616-4	chr9	3404122	3405122	+	931.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027545, intron 1 of 17)	intron (NM_027545, intron 1 of 17)	537.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	7.02587168049608	7.90638372095526	6.90043511205066	7.49720970123428	7.78039529750948	7.0638323768149	0.166979472971908	0.763942258165074	0.941845689312641
Merged-chr3-96764813-2	chr3	96764313	96765313	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	37202.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.74210992800107	4.66313538974218	4.76425237090732	4.86530952749072	4.76034041726644	4.67160129901086	0.116355593660628	0.769307176998712	0.943107988091299
Merged-chr4-102588839-4	chr4	102588331	102589331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	-1012.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.1544573302926	3.88215656047354	3.84548310679381	4.11346184278879	4.24454650354222	4.01967488162048	0.47286028808903	0.34905348903595	0.73710287140402
Merged-chr12-12231800-4	chr12	12231294	12232294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30345.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.79543286572262	5.77671401310921	5.75538209035134	5.98179780085276	5.99872889976084	5.91750135273578	0.341370277527563	0.248103187678371	0.645210965131326
Merged-chr8-85036838-4	chr8	85036358	85037358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122843)	promoter-TSS (NM_001122843)	-57.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	6.69574570365644	6.51268766713396	6.39009239378266	6.70315427346059	6.72415803134663	6.77615904391498	0.295366151770592	0.261286015958818	0.658881274511238
Merged-chr9-122785421-4	chr9	122784911	122785911	+	967.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199736, intron 12 of 19)	intron (NM_001199736, intron 12 of 19)	-20136.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	4.03505133395919	3.81607453310481	4.01181945253422	4.27197138528134	4.05700938220408	4.17527503660454	0.620930421855156	0.206681790561006	0.597309359759271
Merged-chr11-53805159-2	chr11	53804659	53805659	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	B3A|SINE|B2	34686.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.56435310989426	4.5976717963668	4.39293430511173	4.6745856110541	4.96675454255289	4.55302445316087	0.540798178152285	0.209854032829305	0.601780780663032
Merged-chr16-93913013-2	chr16	93912513	93913513	+	607.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	16554.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	2.5092539911845	2.52842790870122	2.74037204220606	3.40595650919448	2.91916950198106	3.12905120501496	3.35508222474566	0.0001571943245581	0.0041274299014927
Merged-chr1-177986910-4	chr1	177986405	177987405	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4493.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	3.14762203207669	3.03748915092571	3.13708920391001	3.38710549247184	2.97844427393692	3.02743370430912	0.16185767832374	0.810462382664927	0.955054272231421
Merged-chr11-97365208-1	chr11	97364708	97365708	+	687.0	f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	2657.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	3.65792063648617	3.36374425035236	3.71149864859773	3.68784511924521	3.9054641318284	3.97482798477901	0.931353124255932	0.0992724394344543	0.42004541385646
Merged-chr11-76217581-4	chr11	76217074	76218074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177367)	promoter-TSS (NM_177367)	-2.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	6.57357435454878	7.00782675298797	6.81916426048045	6.55261388423675	6.70484171609931	6.36657013124468	-0.406493042728506	0.152780851595955	0.521157262312804
Merged-chr15-3994944-1	chr15	3994444	3995444	+	565.0	f0_balb.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	808.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	6.07632889928243	6.44646509373664	5.83191890197032	6.32896332874553	6.79224253976417	5.78116419595383	0.376656858303222	0.327084699680422	0.719317370353337
Merged-chr10-12919456-4	chr10	12918964	12919964	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038028, intron 2 of 2)	intron (NR_038028, intron 2 of 2)	3663.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	3.57486189591032	3.76079725493274	3.35611855070481	4.0436408107714	3.60795042893207	3.97693923103379	0.998094060366798	0.0978616397242315	0.417180433790351
Merged-chr8-76988130-4	chr8	76987627	76988627	+	915.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 2 of 8)	Charlie4a|DNA|hAT-Charlie	85619.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	3.25158775955558	3.22488694246316	3.02734595703249	3.52912107396358	3.15783337180049	3.61458285726546	1.05658925635613	0.112813511250814	0.448580074747098
Merged-chr9-56938203-2	chr9	56937703	56938703	+	664.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133976, exon 1 of 1)	3' UTR (NM_133976, exon 1 of 1)	703.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	6.54677482938453	6.8469077914343	6.20498227892794	6.51973843405359	6.47460114162261	6.0540985341208	-0.31508155513233	0.326333582553308	0.718659876645344
Merged-chr1-36051972-2	chr1	36051472	36052472	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16428.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.77699792177088	3.68189023953774	3.70187179217525	4.02689888552584	3.45307043373098	4.01898571074959	0.426852578212741	0.462043128101361	0.815107818354545
Merged-chr4-129608786-4	chr4	129608303	129609303	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029748)	TTS (NM_029748)	5454.0	NM_001195730	100504491.0	Mm.482597	NM_001195730	ENSMUSG00000078552	Dcdc2b	Gm12964|Gm1366	doublecortin domain containing 2b	protein-coding	4.62021682515581	4.4416572146467	4.55658549768916	3.91929031525917	3.474665189796	3.72401731590737	-2.54702040959428	3.75631302466777e-06	0.000172336236851962
Merged-chr10-99179347-4	chr10	99178846	99179846	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71211.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.04318096520632	6.94303052601817	6.60857709918795	6.73418175414166	7.1225432960101	6.66797436129801	-0.026940742259301	0.925335592479637	0.983166193538686
Merged-chr11-100715211-2	chr11	100714711	100715711	+	662.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029307)	TTS (NM_029307)	1361.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	3.23434122184981	3.23216077237275	3.23069753363038	3.21761771048755	3.08836119757355	3.41164528408784	0.0220154186997235	0.972186862943971	0.993868590220018
Merged-chr7-99891871-3	chr7	99891385	99892385	+	896.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	32667.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	2.3113387684826	2.17380979753153	2.41719305522286	2.34460912441424	2.10759666183433	2.23150574665661	-0.491162984916833	0.576233525985268	1
Merged-chr11-54863248-3	chr11	54862679	54863679	+	854.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2588.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	3.42860886172391	3.25604541089703	3.31778106129967	3.42147430212921	2.95544287975525	3.70059729249921	0.217122930491509	0.75340448141233	0.938549578325581
Merged-chr19-55651491-2	chr19	55650991	55651991	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	50713.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.45069973156759	3.20118126953469	3.34401765272629	3.13795834885931	3.13652366140086	3.57099580808999	-0.181216909275912	0.780058296624827	0.945949149660645
Merged-chr7-73529356-2	chr7	73528856	73529856	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	12390.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	4.70215980004187	4.90105499119074	5.20394390841718	5.11983557486845	5.11202816179876	5.46618056003404	0.618462623574883	0.11887786184381	0.460931459846213
Merged-chr1-172481323-4	chr1	172480808	172481808	+	692.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-905.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	3.5588050975001	3.60876205201578	3.73062541050648	4.03324579930569	3.53034150766518	3.99500347092367	0.770353141037697	0.176863682579256	0.557484404123598
Merged-chr16-33684456-4	chr16	33683944	33684944	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-22.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	7.24722297475937	6.87718323311583	6.8758240753059	7.20639011442713	7.0860241387351	6.97713220090018	0.11850670139965	0.650409799189211	0.902613484298836
Merged-chr9-86579817-4	chr9	86579333	86580333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7780.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	3.49503545714713	3.43094991372339	3.39346556381628	3.33060185549389	3.33210025450225	3.67370077370878	0.0172427480075931	0.977057581315563	0.994771164142869
Merged-chr10-115252405-4	chr10	115251843	115252843	+	732.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	-850.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	3.85588195955115	4.09184141173477	4.12249546922844	3.77472460624923	3.72281925580669	3.80793508734312	-0.814386531747142	0.116148931439843	0.455079356182438
Merged-chr5-106964368-4	chr5	106963874	106964874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009863)	promoter-TSS (NM_009863)	52.0	NM_009863	12545.0	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	4.08770863696203	4.20387763931053	4.0676788839521	4.1017923625188	3.74110472506573	4.22736940123007	-0.27469687471776	0.592392272903089	0.878015251936591
Merged-chr7-143046486-4	chr7	143045975	143046975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-6275.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.27950942246362	5.29236997295877	5.56009309494708	5.33587365871428	5.34649129253695	5.7469747260722	0.202647554049881	0.56983932703567	0.868897023832802
Merged-chr7-99088495-2	chr7	99087995	99088995	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52649.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.60317921176999	4.70067786470635	4.48412101904722	4.96837956979886	4.7717935017962	4.64024829768322	0.462742704796738	0.263815992653187	0.661810760550104
Merged-chr2-126427835-3	chr2	126427337	126428337	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 7 of 27)	intron (NM_001359975, intron 7 of 27)	63716.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	2.99756739568065	3.18519906599055	3.2368333264229	2.83989315009502	3.08815333273835	2.89755819114627	-0.856896103699419	0.222633898636414	0.617600314643732
Merged-chr1-152810839-4	chr1	152810386	152811386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	10733.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.86207233861207	6.24412698900477	6.09870037412211	5.8753127168366	6.09938314912292	5.85537997657185	-0.210749948922912	0.498017359405723	0.833856267944725
Merged-chr7-16242289-4	chr7	16241763	16242763	+	790.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146005)	promoter-TSS (NM_001146005)	68.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	6.52048867320092	6.11437790377815	6.7418088205139	7.11516685404237	7.03902620376182	6.87451220978559	0.849269832396561	0.00350531668102413	0.0472187777877053
Merged-chr2-22965619-4	chr2	22965111	22966111	+	973.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 3 of 10)	intron (NM_001077190, intron 3 of 10)	70089.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	4.55427079736095	4.63663434183633	4.38121504839738	4.78631565349604	4.57792697663625	4.70598483553298	0.365288493431876	0.386492390812322	0.767131316757601
Merged-chr1-13513975-4	chr1	13513474	13514474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	75936.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	3.5956926482671	3.74888121964665	3.64905785080093	3.88105392871862	3.73820299135427	3.60986844110204	0.278537632849386	0.609808481496084	0.885315715493415
Merged-chr8-46680825-1	chr8	46680325	46681325	+	832.0	f0_balb.idr	Intergenic	L1M6|LINE|L1	58690.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	3.77990936139765	3.76088446222151	4.13817534409408	3.85896829815651	3.78175738277086	3.8347301404182	-0.22066572232677	0.677181479952291	0.912699165331091
Merged-chr7-35741448-3	chr7	35740987	35741987	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12967.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	5.4589973018537	5.60738476080061	5.78937483723492	4.09863311756849	3.60451355699278	4.35506757017351	-4.03975326688363	4.96876955663677e-06	0.000220267116285899
Merged-chr12-84177579-2	chr12	84177079	84178079	+	866.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	16436.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.11899824798128	6.20108504131789	6.35733024953787	6.52392610989391	6.34827683704657	6.67078309641924	0.475639524179752	0.0910988262345218	0.401699290355094
Merged-chr9-13443686-4	chr9	13443184	13444184	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12323.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.42201532656518	4.22951348035026	3.88726051706353	3.9746993011106	3.76306802379746	3.9054094945539	-0.964306667608696	0.0655039817677618	0.333810345108521
Merged-chr4-114973403-4	chr4	114972921	114973921	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	13807.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	4.93038653453823	5.20599484773896	5.38047075226397	5.40959163175754	5.22345865489937	5.63131617826667	0.489489912173809	0.19073898953855	0.577277371721487
Merged-chr9-54502771-2	chr9	54502271	54503271	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	4.36603461610552	4.32703394883611	4.17662696881735	4.28040248787205	3.92997570992357	3.88711564035029	-0.699450638210163	0.158769773743243	0.530580157180119
Merged-chr8-126564365-2	chr8	126563865	126564865	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29071.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.20985897876409	5.13575227035154	4.65715545570819	4.99319903078936	4.95345745237154	4.89205819271165	-0.190161043327181	0.637325513812452	0.897338937840938
Merged-chr7-127026212-8	chr7	127025662	127026662	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010772, intron 1 of 4)	intron (NM_010772, intron 1 of 4)	317.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	7.14871747766383	7.63513695113888	7.46365440734391	7.21990380085501	7.32744139169311	6.99776767945607	-0.350145669976204	0.186230693845695	0.570803258887202
Merged-chr2-50813953-4	chr2	50813447	50814447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95737.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.50720833552212	5.56323819095767	5.46121155972658	5.40218452749785	5.70232132207258	5.74225060842187	0.205049620321262	0.53528341317836	0.853511885485043
Merged-chr4-139200330-2	chr4	139199839	139200839	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	6228.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.07794702443721	7.02136126163721	7.22742470526826	7.26325294628784	7.36549561930312	7.20211114974971	0.265796886559274	0.261765356325438	0.659569747422313
Merged-chr8-85500680-4	chr8	85500192	85501192	+	956.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	8075.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.10705434597591	3.92588807075312	3.77623689661596	3.83533691769506	3.71148481416285	3.89870768686113	-0.434022204672403	0.408173676477689	0.781964738517462
Merged-chr1-92666866-4	chr1	92666352	92667352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-18011.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	6.52023606366663	6.49319282197618	6.51627964372041	6.39202188156706	6.30049133328302	5.99667261142725	-0.42284912873207	0.133472914512104	0.488692066303093
Merged-chr19-5662484-2	chr19	5661984	5662984	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	intron (NM_001164480, intron 1 of 16)	1223.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	5.09367745274403	5.48674838668557	5.52018165941463	5.77199278339911	5.79410673462712	5.71820016945489	0.729897686911047	0.0316689103116935	0.215762440777482
Merged-chr5-88766268-4	chr5	88765776	88766776	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	1263.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	5.41650558913677	5.41414546807572	5.66097258757749	5.89363472541728	6.1637452936436	5.85197630881245	0.900070712336298	0.00506123707199708	0.06169578293096
Merged-chr11-109367438-2	chr11	109366949	109367949	+	921.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3795.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	6.63045015876193	6.67427101405966	6.35354029809826	6.91909981210611	7.03116835768813	6.55034194702763	0.456303599816844	0.107917577601471	0.438735808719558
Merged-chr11-100414577-4	chr11	100414085	100415085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176830, exon 1 of 8)	exon (NM_176830, exon 1 of 8)	234.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	4.3512954414186	3.89262525891487	3.91238481321633	4.20060366039209	3.61731100326011	3.9833534247437	-0.350932900395486	0.535348952495132	0.853511885485043
Merged-chr15-101113972-3	chr15	101113425	101114425	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1830.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	6.02036217665411	5.88450072572215	6.01743553887835	6.33825749992357	6.30748071474733	5.82988053323266	0.372730059273583	0.230623409897078	0.626381219532661
Merged-chr4-49632015-4	chr4	49631522	49632522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163263)	promoter-TSS (NM_001163263)	-38.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	6.97520909043855	7.26186502621943	7.07284276854231	7.09985182097205	7.0347967170583	7.14324516826857	-0.0324278269434962	0.894547431875201	0.975576532925631
Merged-chr2-27727567-2	chr2	27727067	27728067	+	923.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	16984.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.23962180235033	7.33546777885035	7.26119244869627	7.07920835357498	6.98881570992031	6.87381918231179	-0.441708001546678	0.0628928652842207	0.326233393974156
Merged-chr6-67102964-3	chr6	67102425	67103425	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65518.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.89479344478189	3.90422652166547	3.55207079025505	3.33399186821484	3.04499296072433	3.73025811497347	-1.44159020203713	0.0344146612219141	0.227195741903604
Merged-chr19-37814690-3	chr19	37814196	37815196	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116888.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	3.48479577366931	3.45153984098195	3.41425531816524	3.85865414389831	3.51285585339413	3.54436795875457	0.70092625550122	0.227965440759221	0.622981752321771
Merged-chr16-36531784-4	chr16	36531287	36532287	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30347.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	4.79593659716472	4.7995538229208	4.5490646129559	4.36923630667025	4.61956304535576	4.81304424607433	-0.283318421181929	0.509577689394164	0.840445299624642
Merged-chr1-154040375-3	chr1	154039856	154040856	+	873.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	140427.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.8210125172628	4.70528559061509	4.88458690370965	4.64640057949124	4.57108811715052	4.94884377450468	-0.188531513270041	0.645270213663063	0.900466568600556
Merged-chr15-82342420-3	chr15	82341985	82342985	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177391, intron 1 of 1)	intron (NM_177391, intron 1 of 1)	1306.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	3.69495668993566	3.52898021575096	3.78705076238159	3.61919207816069	3.5429600767819	3.5454549294102	-0.34815859216494	0.532789154902943	0.851971173271146
Merged-chr13-45974828-4	chr13	45974327	45975327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9836.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.39905050896624	5.31217263091465	5.84378425313868	5.54821202304951	5.43576940762912	5.28269467796705	-0.181703742755654	0.615708574836506	0.888073730124794
Merged-chr11-52076442-4	chr11	52075993	52076993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-22331.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	6.65605581066452	6.35517314570006	5.97658255602431	6.40840894940287	6.27009054824717	5.76604124834301	-0.301389190415949	0.387751591830595	0.767721672469137
Merged-chr8-122978407-2	chr8	122977907	122978907	+	693.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	URR1A|DNA|hAT-Charlie	63877.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.37030851719748	3.54849271076514	3.34711865058429	3.28670855416394	3.21874920806953	3.52706026147283	-0.332604110812853	0.587104754332319	0.875769926947203
Merged-chr17-26532823-4	chr17	26532393	26533393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24421.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.62403035464029	8.72269063699784	8.32213734958127	8.10585169281308	8.56740766540037	8.29676772766003	-0.319197285020903	0.188977133102931	0.574491589318208
Merged-chr13-3537989-4	chr13	3537484	3538484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008112)	promoter-TSS (NM_008112)	-91.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	7.10215241940254	7.12644735190805	7.16005714727844	7.18795560061496	7.17975431706929	7.45841020351319	0.219405548727132	0.360918545992469	0.746938274913623
Merged-chr6-91716420-4	chr6	91715923	91716923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	32356.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.80077455357377	7.97902540389612	7.73300350572031	7.80976540276251	8.03365502254775	7.50798287636023	-0.0478671113929387	0.847477983493868	0.964318271116593
Merged-chr14-103795805-3	chr14	103795292	103796292	+	849.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47909.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	2.39046837822504	2.60848767353958	2.5348934420712	2.15332510784915	2.36923964721711	2.35258374396569	-1.42441432281008	0.111923910993015	1
Merged-chr5-146221040-4	chr5	146220529	146221529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-58.0	NM_001256086	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	7.27374012214904	7.40475903928082	7.77490892500977	7.82295451387197	7.8319449838364	7.6683230003856	0.413852794138131	0.0958072374253539	0.412668423837294
Merged-chr3-152209818-4	chr3	152209277	152210277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	306.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	9.01435352002446	8.96422045331981	8.33622606670139	8.76699524029327	8.7516131091773	8.32049379267155	-0.247140209128628	0.362647396012533	0.748144036950874
Merged-chr12-65038654-2	chr12	65038154	65039154	+	657.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	2320.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	3.50466761033094	3.49153413493239	3.59414358258125	3.41152653861221	3.45753255190521	3.50557693738878	-0.260846312053785	0.647694476221069	0.901510214793849
Merged-chr13-41606412-4	chr13	41605931	41606931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	CpG	215.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	8.62645658635428	8.72702789670087	8.4510807235361	8.59233302831893	8.66802019674626	8.54478625512588	-0.00837717957043552	0.967678960874122	0.992581088872982
Merged-chr17-71252546-5	chr17	71252088	71253088	+	590.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357336, exon 8 of 8)	3' UTR (NM_001357336, exon 8 of 8)	47934.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.85384752962456	3.59277364892621	4.02708756021306	3.42894692075926	3.33675844203573	3.61924628957629	-1.30999055209607	0.0263869307014642	0.192918348985804
Merged-chr14-25402666-3	chr14	25402142	25403142	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56543.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.00951101103541	4.82432509360715	5.57202650011598	5.1129818162635	4.73363165705988	4.92363464437266	-0.494834646870337	0.253248599987676	0.650656162496163
Merged-chr1-64481743-2	chr1	64481243	64482243	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-51061.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.92836311690822	4.46010167138864	4.32440119785108	4.47629095784108	4.31280727261149	4.78119959316365	0.694900909295825	0.16261603771994	0.536115331047174
Merged-chr11-93955298-1	chr11	93954798	93955798	+	1000.0	f1_c57bl6.idr	intron (NM_001077529, intron 1 of 3)	intron (NM_001077529, intron 1 of 3)	485.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	6.66655407293756	6.76236113078902	6.9362935713499	6.62359997459436	6.66374957636398	6.31583541315967	-0.367630797484572	0.178741746453731	0.560054633198232
Merged-chr1-155470621-4	chr1	155470112	155471112	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-53168.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	4.18379259388431	4.04212833480075	3.8855561683657	4.07076763155955	4.06835158355526	3.90345142067911	-0.0825589310356249	0.868929515128094	0.969755809171886
Merged-chr11-11573872-4	chr11	11573375	11574375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53963.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	3.08038781425471	3.10915849616931	3.0966008684892	2.90886339125526	2.9401434051545	3.27885232719799	-0.22234700027342	0.742643222972795	0.935335229878006
Merged-chr2-150919479-3	chr2	150918969	150919969	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	L1Md_F2|LINE|L1	9875.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	3.61726160463817	3.44463385072214	3.74768422279523	3.74590947613902	3.80618719404936	3.81703019629321	0.636947092031897	0.244476402113375	0.641857585809161
Merged-chr9-56265101-4	chr9	56264582	56265582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-104012.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	8.03448542656916	8.40171613404952	7.72116315804562	7.76055155319262	8.17577395850731	7.53969884997232	-0.322731875834073	0.269141349597777	0.66629407200667
Merged-chr19-37176205-1	chr19	37175705	37176705	+	692.0	f1_balb.idr	promoter-TSS (NM_001290826)	promoter-TSS (NM_001290826)	-142.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	6.52687962248762	6.88800327992427	6.53948513387652	6.88696287803922	7.42937247084002	6.90902945514762	0.679926529090873	0.0223065813588217	0.173529336328715
Merged-chr1-170885465-4	chr1	170884950	170885950	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356485)	promoter-TSS (NM_001356485)	90.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	5.89153174482284	6.16851360185335	5.7246863582713	5.74834266077768	5.66827812295076	5.32580444011169	-0.623678231453874	0.0678186486622644	0.340801016629576
Merged-chr7-28431495-2	chr7	28430995	28431995	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	4696.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	4.93227779997299	4.91475665403561	5.08811331971963	4.96993668804639	5.278882887347	5.4795445137485	0.582211453713059	0.126321860777676	0.475259203870093
Merged-chr18-35941739-2	chr18	35941239	35942239	+	911.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23091.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	4.73346635203971	4.41728016580974	4.69743354260059	4.40898483470308	4.05548060461514	4.4456280073298	-0.804897600044064	0.0821942777934157	0.379123019025808
Merged-chr2-120606481-2	chr2	120605981	120606981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159609, intron 4 of 5)	intron (NM_001159609, intron 4 of 5)	2834.0	NM_025657	66606.0	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	3.24552602111026	3.60626168914284	3.59755421240867	3.3177277608944	3.13638224501791	3.666841869443	-0.398707051474813	0.538841108716506	0.855499837319602
Merged-chr15-86188734-2	chr15	86188234	86189234	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	4.98274586907467	5.04451329474403	5.39772234281024	4.89897192709955	4.88690291756174	5.22975597793286	-0.29396942775776	0.453224733662765	0.809701014116181
Merged-chr15-5221944-3	chr15	5221449	5222449	+	856.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	22238.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.54464798820297	3.61402463572321	3.17248386738852	3.47768734542861	3.4021438570711	3.64962368035177	0.161808352961907	0.796602072097926	0.95143561822849
Merged-chr7-16044031-4	chr7	16043543	16044543	+	945.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27802.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.19802950720739	7.28649181085471	7.21034880998441	7.31566923836351	7.56105764392732	7.29146523851775	0.250832523245814	0.290340423220661	0.688084475515373
Merged-chr5-65092140-4	chr5	65091642	65092642	+	885.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15426.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	6.85565167408534	6.92725959022571	6.59466880789381	6.96312283738171	7.2572258652822	6.58128057184632	0.261298124966612	0.37679930377712	0.759403101988243
Merged-chr8-105347190-4	chr8	105346735	105347735	+	890.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	735.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	7.48442292300209	7.63571002650482	7.46561344978474	7.7194341366741	7.93241501344846	7.55334541595627	0.317040664163206	0.18021561043158	0.561900868076458
Merged-chr6-13872335-4	chr6	13871824	13872824	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	755.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	6.4968791042299	6.55720819119441	6.66080692038857	6.60162890916415	7.12038038748918	6.68725190072757	0.418344098711628	0.141969901331696	0.503024615152583
Merged-chr5-59854992-4	chr5	59854499	59855499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131003.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	2.70459060351752	2.8866432398579	2.82129571594975	2.89952045899537	2.96853851829485	3.01462438593212	0.75744541815426	0.28195729109481	0.679908771156903
Merged-chr17-83276435-7	chr17	83275881	83276881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	61098.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	8.61579193386421	8.77013701140224	8.49770021565077	8.39704359642532	8.66992881977256	8.17058445315305	-0.275610004513451	0.242152849150675	0.639226365665092
Merged-chr5-64861504-4	chr5	64861000	64862000	+	908.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57977.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.55822805166896	5.5032378742377	5.6210103159948	5.86697982610026	5.76460527882854	5.93280798667729	0.536957093943295	0.0837982735299434	0.383093607157822
Merged-chr15-103455184-3	chr15	103454695	103455695	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 2 of 30)	intron (NM_153505, intron 2 of 30)	1370.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	4.81386121238494	4.71666967245257	5.02053969009318	4.86954917251912	4.97500719405384	4.8733977097833	0.143646349647472	0.711910996519578	0.924889808252387
Merged-chr9-44721423-4	chr9	44720920	44721920	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	CpG	13778.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	3.52035243312136	2.86597125262022	3.08976865929144	2.99438080581675	2.78616450719485	3.10374869959014	-0.999256108360342	0.180503735213297	0.562412299358467
Merged-chr8-13890333-4	chr8	13889808	13890808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025556)	promoter-TSS (NM_025556)	-37.0	NM_025556	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	6.56638979325758	6.67809707498353	6.30655418559601	6.29069118779576	6.05039948373054	5.88021777703222	-0.732985753077104	0.014250133912705	0.12828358137059
Merged-chr8-3665680-4	chr8	3665176	3666176	+	902.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-86.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	2.40705849283897	2.41006822886007	2.63257972345536	2.64214496637506	2.39988256014199	2.58229317969634	0.357292509985992	0.656144625622122	1
Merged-chr10-93271295-1	chr10	93270795	93271795	+	656.0	f0_balb.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39864.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.14183995985601	3.48528892297591	3.65207346553292	2.8956314367801	2.90886697901917	3.08538575072287	-2.14098415596337	0.00280394436250839	0.0399691690984538
Merged-chr1-87652866-4	chr1	87652338	87653338	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32526.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.81549927307754	6.73036662536504	7.0471338554373	6.95115362853451	7.09731430307717	6.90289249949002	0.198728889022581	0.435875432641347	0.799403653016169
Merged-chr11-103409210-3	chr11	103408740	103409740	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	3424.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.48458071123909	4.69129501517309	4.66289660558425	4.77277391572741	4.71417493932263	4.914334328426	0.425311705269959	0.295547290522961	0.692475965134868
Merged-chr18-34776923-4	chr18	34776427	34777427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081256)	promoter-TSS (NM_001081256)	-81.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	7.73194421690328	7.42630917934422	7.56050611503426	7.62622550765158	7.13115125106266	7.54032856256244	-0.196640836647318	0.450823616387739	0.808622732738337
Merged-chr3-65929554-4	chr3	65929071	65930071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28678.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.31151102752336	6.35384324371305	5.9937313217175	6.21402546392077	6.25500742500279	5.87765252203303	-0.170734928207674	0.576944970789353	0.87187513064165
Merged-chr15-93405737-4	chr15	93405157	93406157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	intron (NM_001358749, intron 2 of 8)	7193.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	5.52096342406933	5.35575140125264	5.32177576408492	5.72822155424616	5.7297316846409	5.56956729273017	0.520582215436841	0.111227122994821	0.445472081717353
Merged-chr15-58775755-4	chr15	58775250	58776250	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47677.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.51205631186683	4.55781236635271	4.27493928450431	5.0613310447992	4.95855943181509	4.7127134263796	1.07548590786537	0.0117446419835364	0.112521378257466
Merged-chr13-41075526-2	chr13	41075026	41076026	+	628.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	4180.0	NM_001145803	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	4.17207187977447	4.45912953399881	4.73032526248298	4.10238034156557	3.72580645687425	4.54499796865594	-0.809819678072888	0.144766024483182	0.507621952799257
Merged-chr1-94722022-2	chr1	94721522	94722522	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75420.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	2.83832710982219	2.81824381813564	2.87037394524684	2.58617771798422	2.64920681271675	2.99989414846442	-0.464192616133115	0.5378572575146	0.854867563479425
Merged-chr17-74868522-6	chr17	74868105	74869105	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-136924.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	4.29702279060693	3.90309417650421	4.07413005452155	4.19898692859824	4.01624696920948	3.99497635286018	-0.0848563509358156	0.865740808530307	0.968641478520565
Merged-chr1-134962557-4	chr1	134962042	134963042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-23.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	6.22545139852062	6.47536474579987	5.68034762578139	6.27334539175951	6.44775735405785	5.68340461469365	0.0109382211992337	0.977110176292432	0.994771164142869
Merged-chr9-119076731-5	chr9	119076347	119077347	+	965.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 3 of 14)	intron (NM_019676, intron 3 of 14)	11414.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	6.00003130309331	6.26440448440102	6.03981197854048	6.2218070749092	6.57001159659765	6.2119584181788	0.408917902531636	0.173085909792267	0.551834359126378
Merged-chr7-27545839-3	chr7	27545329	27546329	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011116, intron 1 of 13)	RMER19B|LTR|ERVK	7389.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	5.19264183854195	5.60514137730388	5.16269865690477	5.04602384797345	5.17178763587502	5.66078991560996	-0.0669351616224768	0.866853385890731	0.969114221403526
Merged-chr15-101379368-4	chr15	101378884	101379884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	6.52511864347762	6.81191929866139	6.55356330891705	5.85692475145576	6.38934793508932	6.38033878581352	-0.659680845154213	0.0323082015194351	0.218436729668413
Merged-chr13-33003127-4	chr13	33002611	33003611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	5.04371325483928	5.01659124170187	4.76664637914881	5.63780191563072	5.55254982463449	4.96223323832494	0.9570366410077	0.0175946596332812	0.14828486161917
Merged-chr8-80031402-4	chr8	80030907	80031907	+	932.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	26601.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	5.4381741609639	5.42514295439558	5.26298262696396	5.82655381964724	5.8935182990064	5.49086888649495	0.703190372493556	0.0368673213204819	0.236628823853337
Merged-chr16-42876838-3	chr16	42876351	42877351	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1089.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	6.02916286323161	6.33559728903199	5.84755867489613	6.5241318009662	6.46348718481696	6.24282622471229	0.533243382197299	0.0810179790673726	0.376661675724458
Merged-chr2-31053505-2	chr2	31053005	31054005	+	707.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019406, exon 9 of 9)	3' UTR (NM_019406, exon 9 of 9)	42995.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.94683892319417	5.725245565511	5.99072154831883	5.57872533346452	5.54608134704037	5.84591448456233	-0.424988476447879	0.184347171530466	0.567969765198171
Merged-chr6-115993876-3	chr6	115993449	115994449	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	1056.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.93833449176831	3.68716546525639	3.87995166694326	3.63263240541338	3.58429173645155	3.75095773857299	-0.624164155493303	0.249176957347876	0.646134245609601
Merged-chr2-180704381-3	chr2	180703962	180704962	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	B1_Mur4|SINE|Alu	-2360.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	4.68107659090996	4.13558831996793	4.42340699684754	4.30835228043487	4.18196702785176	4.64882337885817	-0.125404088684156	0.798229647899285	0.951930937621884
Merged-chr17-28951882-4	chr17	28951377	28952377	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	-559.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	7.12241840262535	7.0799840180989	6.94200586769313	7.13035430111111	7.17719766587103	6.73754801624121	-0.0204552752658443	0.937606658099097	0.986057836872162
Merged-chr1-63181211-4	chr1	63180711	63181711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018796)	TTS (NM_018796)	2188.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	3.6351700899403	3.54316487902785	3.41486243852769	3.35224426659816	3.32983737798634	3.54054711450156	-0.507193612456604	0.389584686809536	0.769244170164916
Merged-chr3-89430299-4	chr3	89429806	89430806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293763)	promoter-TSS (NM_001293763)	92.0	NM_001293763	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	5.45302604613255	5.51612694895939	5.42966662007186	5.16351472303627	5.43755160577154	5.34050992528743	-0.283163656451952	0.406075996118002	0.780529555167911
Merged-chr13-95799038-3	chr13	95798483	95799483	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	92939.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.32939314699138	4.15250262543478	3.74943415312795	3.98335069846752	3.805655069686	3.93149658360031	-0.600749507359329	0.261492166913874	0.659232278973625
Merged-chr1-185207995-4	chr1	185207478	185208478	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	MTC|LTR|ERVL-MaLR	3810.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	6.94377698613378	7.37575579857876	6.91753162141325	6.8361455073798	7.09102024212865	6.85753825320018	-0.251179409245187	0.360911795674162	0.746938274913623
Merged-chr1-88701710-2	chr1	88701210	88702210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177305, exon 1 of 1)	5' UTR (NM_177305, exon 1 of 1)	481.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	8.05089838983504	8.16256863736415	8.08091148811902	7.91568880439385	8.14534854454877	8.02995588667507	-0.0896458098523181	0.6746670658504	0.911852710156386
Merged-chr11-106999611-4	chr11	106999109	107000109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010655)	promoter-TSS (NM_010655)	-84.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.18507732410194	6.28043732906467	6.58432718292291	6.43334229396663	6.56286424157971	6.45537829904695	0.225937842043978	0.422189343199931	0.79102749085746
Merged-chr13-113608609-2	chr13	113608109	113609109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	9955.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.61341387463002	3.43991687744634	3.71461519974586	3.56365964808234	3.60495688150776	3.97113238023852	0.439091574278739	0.444228186821198	0.804143628616024
Merged-chr5-100624964-4	chr5	100624444	100625444	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49312.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	4.06775652054724	4.10714329084786	4.27286953571203	4.35838170091311	3.98947047854076	4.6173454963926	0.510720052953149	0.308485201717883	0.704565421726157
Merged-chr19-34199665-4	chr19	34199152	34200152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6718.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	7.17298622901493	7.19219431953075	7.06318237531204	7.59275885084818	7.77982827107843	7.16115479147821	0.592399792554936	0.0254751248645915	0.189245084343624
Merged-chr8-88283406-2	chr8	88282906	88283906	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109756, intron 1 of 27)	intron (NM_001109756, intron 1 of 27)	414.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.75486406376926	3.88993652609066	3.73523713078506	4.13648969979002	3.65342144664895	3.75256506151582	0.211375978291785	0.701711238562655	0.921463870335944
Merged-chr10-117720057-4	chr10	117719565	117720565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9307.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.35705946086934	6.26329766060269	6.27684276751006	6.63921766057635	6.7705017126244	6.16342418793076	0.428148309459907	0.151627247195144	0.519079091424247
Merged-chr1-155049835-2	chr1	155049335	155050335	+	980.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	33429.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.43086088018885	5.03139763299565	5.14937737916745	5.1002504768398	5.26094491676816	5.34066828274493	0.0332764081077745	0.928306666857661	0.983802612059568
Merged-chr10-21855498-4	chr10	21854974	21855974	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26710.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.77439971695659	3.82438857285613	3.80987707083697	3.88732334563838	3.73590216010957	4.06997274057587	0.29243152899527	0.57605501727556	0.871496930818991
Merged-chr1-191880353-4	chr1	191879865	191880865	+	728.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26416.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	3.53877229823442	3.65416830832239	3.60244882280985	3.60759293765495	3.42213353993286	3.20581184348543	-0.627963848263883	0.301114896875981	0.697832487817053
Merged-chr19-47449080-4	chr19	47448560	47449560	+	795.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	MIR|SINE|MIR	15351.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.72926206582252	3.84506402863982	3.90877300058011	4.02945071927734	3.45986844977716	3.72420008568179	-0.224647753129551	0.69409523875264	0.919171082490565
Merged-chr5-114597849-4	chr5	114597352	114598352	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	B4|SINE|B4	29601.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	4.70540051583985	5.28146015945234	5.23237109838018	4.87043545033993	5.01107036615813	4.45163210968632	-0.619926628591609	0.171443643348731	0.549517822641034
Merged-chr3-41566171-4	chr3	41565648	41566648	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	CpG	1268.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.90415629143501	5.65640454497215	5.59541151158712	6.30448557454621	5.72545681197119	5.7977087463576	0.425369577626582	0.219499609694162	0.613724448754633
Merged-chr16-16856306-2	chr16	16855806	16856806	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	7679.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	5.03752009647352	5.10012730121946	5.65137804191526	5.36589241347378	5.71709542759957	5.55723409716311	0.544128758525646	0.154452529825841	0.523788967303087
Merged-chr7-79715190-2	chr7	79714690	79715690	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	4.07669661138531	4.35363061321282	4.74941895561164	4.42274638734101	4.44993362534141	4.84755713749377	0.415893199803941	0.396411170131358	0.773652887901204
Merged-chr2-15048285-2	chr2	15047785	15048785	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165943, intron 1 of 10)	B1_Mus2|SINE|Alu	1027.0	NM_001165942	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	3.4269183648371	3.475835350194	3.23438890415117	3.31728008773343	3.12073513205244	3.30708235006149	-0.570744456693594	0.360599470293433	0.746795776897206
Merged-chr9-77910136-4	chr9	77909631	77910631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	8.28042091283966	8.26334287248539	7.96192325561045	8.17104079399044	8.11211541822141	7.36737196126576	-0.335587033129678	0.243915337432079	0.641053788267188
Merged-chr3-27227572-3	chr3	27227091	27228091	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	B4A|SINE|B4	44587.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.29413320972231	6.08923745103448	6.17539705397777	6.17202335548716	6.53512536888383	6.08079863687863	0.171781699752415	0.569525220844179	0.8688875602138
Merged-chr19-56810984-2	chr19	56810484	56811484	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 1 of 14)	L1MA9|LINE|L1	2699.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	2.59290347885921	2.6489471276878	2.86628847375056	2.6222562007784	2.47980150707511	2.70182235114385	-0.576700140005716	0.454764014236239	1
Merged-chr7-82838600-4	chr7	82838102	82839102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-28731.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	3.58974706494197	3.68878137021758	3.65372883358632	3.77301960978773	3.90020528214718	4.11058941972683	0.923594667528409	0.0851478564088362	0.386252608791229
Merged-chr12-80325001-7	chr12	80324510	80325510	+	973.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-64629.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	7.23210893128196	7.2006463955555	6.91681140273065	7.06971620689334	7.29590366608546	6.75548592622735	-0.0886911110254892	0.746717668045048	0.936300236930265
Merged-chr8-3225348-2	chr8	3224848	3225848	+	767.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	54269.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.08479601532158	4.19648941749101	4.27816313667819	4.1720169377531	3.95931343466757	4.38666238263159	-0.0345650927480114	0.943339072736653	0.987377570608805
Merged-chr2-144280830-2	chr2	144280330	144281330	+	559.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9926.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	3.19920832361522	2.87856579747632	2.99507445053531	2.90631081830027	2.87590051119369	2.8189901007871	-0.783343439225251	0.268418354164127	0.665530987612523
Merged-chr14-64916050-4	chr14	64915541	64916541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	33816.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	6.85382899263401	6.88628407720009	6.75222837900205	6.8779975454877	7.33449317160058	7.08205278810378	0.432726899084698	0.100237465916037	0.42218868283572
Merged-chr6-129400513-3	chr6	129400008	129401008	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3211.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	7.87829438801469	8.04321991770398	7.70399765865047	7.9352967076218	8.2019690693457	7.69537627920328	0.117741791902141	0.637972623940399	0.897380718500389
Merged-chr13-60877458-4	chr13	60876957	60877957	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13041.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	5.69079492210656	6.29357579808206	6.30936515160991	6.58969106365881	6.49520865779487	6.16371179455838	0.511798800169358	0.123529932643063	0.47040954446207
Merged-chr15-66833536-4	chr15	66833015	66834015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 43 of 47)	intron (NM_009375, intron 43 of 47)	-1686.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.79998607496876	5.58316657557703	5.83658834967767	5.64759914657021	5.8654546933791	5.36068711546004	-0.151647449041233	0.657063589027821	0.904749338441592
Merged-chr13-46669479-4	chr13	46668985	46669985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033192)	promoter-TSS (NM_001033192)	-37.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	6.55275239078244	6.52861891935454	6.58663080219834	6.27523768366849	6.30560922298315	6.05433465860091	-0.536790969539638	0.0497908570125044	0.283844726657746
Merged-chr16-32978661-3	chr16	32978164	32979164	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 8 of 20)	intron (NM_001081255, intron 8 of 20)	64564.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	5.68635233501252	5.87190906450432	5.58466754774537	5.87026278938653	6.01389646786539	5.4631484319711	0.164443794448336	0.62921279293221	0.894111604640856
Merged-chr10-93273581-4	chr10	93273143	93274143	+	913.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	37516.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.10880166301147	4.39384657884847	4.34250161572776	3.78541084344068	3.66402597231465	3.90599903642145	-1.53928630546607	0.00274690443958827	0.0393737165562895
Merged-chr10-80703317-2	chr10	80702817	80703817	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027829, intron 3 of 9)	intron (NM_027829, intron 3 of 9)	624.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	4.01825667236385	4.2370668022715	4.46088274305031	4.01905006516215	3.89997995052335	4.28484030018285	-0.495272397778907	0.32622348712089	0.718562153651922
Merged-chr9-44267567-2	chr9	44267067	44268067	+	673.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	620.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	6.92951201279097	7.01870255381944	6.76027123146284	6.92053038769829	6.81514945805634	6.72273323242893	-0.138141442704301	0.585234524076916	0.874924030542553
Merged-chr8-122907964-1	chr8	122907464	122908464	+	992.0	f1_balb.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	59590.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.11161081167238	3.05854264527585	3.13030996505815	3.16282678502462	2.88678858029011	3.31315925211436	0.113653906856091	0.866120643508693	0.968757596344316
Merged-chr10-19061386-2	chr10	19060886	19061886	+	845.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45976.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.24746280720835	8.38166953376964	7.71216679289908	8.30051486426977	8.74836131037194	8.14684390502611	0.389245995516705	0.172642791116895	0.551230561617291
Merged-chr17-71203437-4	chr17	71202930	71203930	+	918.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-1224.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.65909272194529	4.35881877653013	4.59254653101107	4.75598503869493	4.54202070109615	4.6589863200998	0.269485761914322	0.526895359812641	0.849698802242189
Merged-chr2-119621735-2	chr2	119621235	119622235	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042652, intron 1 of 9)	RLTR53_Mm|LTR|ERVK	-3230.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	2.32957842353275	2.19547523750319	2.40024537893422	2.18569644688957	2.1585745485139	2.21737915063152	-0.870358082517298	0.317279987823743	1
Merged-chr5-64505453-4	chr5	64504948	64505948	+	745.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28440.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	5.68693887836803	5.86942941806483	5.90351760811019	6.37691176864108	6.38228573109257	6.25284852755748	0.896366669822307	0.00188027779673464	0.0294529659093931
Merged-chr13-45107628-2	chr13	45107086	45108086	+	799.5	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	-105490.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.59857352805442	5.75431239032989	5.51006481940595	4.33598267277163	4.1666414962171	4.46085418181194	-3.05238379949979	3.69716234339992e-13	7.57717941550789e-11
Merged-chr1-166379136-4	chr1	166378648	166379648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030245)	promoter-TSS (NM_030245)	-19.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	7.88398949479449	8.09485122096908	7.65875460066667	7.89384777790929	7.86645456060627	7.41397376485411	-0.209864321238975	0.419374305089579	0.788977038405131
Merged-chr11-76406854-4	chr11	76406380	76407380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291161)	promoter-TSS (NM_001291161)	-45.0	NM_001291161	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	6.11011124758535	6.71771548170208	5.86356324712023	6.06681124329511	5.90764126397852	5.95171816673478	-0.541112224324579	0.123007774688067	0.469226191548373
Merged-chr11-54809918-2	chr11	54809418	54810418	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10001.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	2.87093117252627	2.76134852670377	2.64909733603079	2.70820808985581	2.53078099364997	3.02463491515485	0.00367756964882861	0.996254968472428	0.998961028701257
Merged-chr10-42679880-4	chr10	42679385	42680385	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	969.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	6.60624121563264	7.02799778397537	6.49246111771595	7.00055056270574	6.88223077604047	6.45540203258501	0.106789680401895	0.727671761391601	0.930204882969987
Merged-chr9-56266688-4	chr9	56266186	56267186	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105616.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.86326771061128	6.16670218177313	5.81338007656905	5.35036980991959	5.74711998749956	5.74722052125714	-0.601761675743373	0.0734188757266037	0.35604603167381
Merged-chr10-80901014-4	chr10	80900539	80901539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-70.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	6.06714712039816	6.15516472157354	6.07174467140802	6.129075944725	5.94942524299686	6.15386106216131	-0.0465701611906174	0.871412503939546	0.970222087171093
Merged-chr3-152346840-2	chr3	152346340	152347340	+	943.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355666, intron 1 of 21)	CpG	362.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	6.07153711047214	6.19837520187112	6.21159483466715	6.07511013438529	6.02938108915549	6.14793316477469	-0.135056789581143	0.633266193631996	0.895983904773527
Merged-chr16-36072065-4	chr16	36071578	36072578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	418.0	NM_001159421	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	7.92662546183818	8.06547254167549	7.99303089837891	7.9157981562899	7.98328284214008	7.74098646841982	-0.152360158448988	0.484069924319591	0.82665199605554
Merged-chr9-65361716-1	chr9	65361216	65362216	+	774.5	f0_balb.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	656.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	7.11446991542885	6.97900762802945	7.10736634257727	6.69669952105333	6.79774307286564	6.64715944026441	-0.532563186353588	0.0313581312070093	0.214558620300373
Merged-chr17-32536513-4	chr17	32536004	32537004	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024442)	promoter-TSS (NM_024442)	-53.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	4.12746303044174	3.80064971537593	3.91589304219775	3.95255138186494	3.9271810872558	4.26055785196146	0.266020455081563	0.607161722031166	0.884448083779426
Merged-chr4-53101350-2	chr4	53100850	53101850	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	58545.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.78583690772292	2.48845496742208	2.56000638626548	2.7130540647653	2.54034308343523	2.82239581444273	0.397478050946408	0.613225184333867	1
Merged-chr7-35028077-6	chr7	35027548	35028548	+	861.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	28518.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.87699601499124	8.03441564199858	7.76002537467	7.93539364593335	8.03403562668028	7.72705574943063	0.0161644667006075	0.943811389131162	0.987495247303971
Merged-chr6-42392877-2	chr6	42392377	42393377	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7361.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	5.9438678678751	5.34278445252598	5.1936535203743	5.37697841912389	5.59462512153	5.11180004408525	-0.305621587750871	0.453827784690438	0.809979841654596
Merged-chr12-69184076-4	chr12	69183479	69184479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	88.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	8.76850149006889	8.81101011069072	8.44574712675013	8.47648911139076	8.57932762317265	8.42031851822679	-0.268720755473243	0.217210459190935	0.610947094221659
Merged-chr9-65033773-2	chr9	65033273	65034273	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	PB1D10|SINE|Alu	1315.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	4.72260693961239	4.69261215169654	4.70401214903604	4.58763109797804	4.9401356427144	4.60655541424225	0.0667043140518061	0.872450156796846	0.970261003150518
Merged-chr16-27390845-2	chr16	27390345	27391345	+	702.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	1889.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	6.33726987322498	6.45020605072397	6.36015441937493	6.48209757743289	6.77386232842402	6.68257016256712	0.433656239958061	0.106773895965313	0.436131870574925
Merged-chr15-59145803-4	chr15	59145313	59146313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63787.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.40690726942376	5.23094164614541	5.51353993436317	5.20049285354986	5.08258921674323	5.00754324970863	-0.566985505390964	0.113019100237346	0.449191427529329
Merged-chr8-70000821-1	chr8	70000321	70001321	+	577.0	f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	6.08013662244823	6.23802882455036	6.15058522904716	6.05112980836185	6.4102409406781	6.07891982590137	0.0738654421086158	0.803646478836633	0.95351077179348
Merged-chr2-160602629-2	chr2	160602129	160603129	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43268.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.69792486601962	3.86788407646202	3.64344092793815	3.87844467492914	3.37994876212334	3.71474027513305	-0.243256146659944	0.676383615451771	0.912525597578286
Merged-chr17-56765718-2	chr17	56765218	56766218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144858, exon 2 of 13)	exon (NM_144858, exon 2 of 13)	967.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	3.71383334368067	3.36184905922158	3.34354642993066	3.45986989870765	3.36309883714554	3.47329671438944	-0.222872230829919	0.712910417410575	0.92531822516521
Merged-chr1-66863323-4	chr1	66862812	66863812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-3.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	7.9510342072951	8.08589204011165	7.60737918364341	7.69078916270182	7.735454962499	7.83411118206588	-0.218350617211102	0.361523301241773	0.747413912465046
Merged-chr15-103274827-6	chr15	103274363	103275363	+	889.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	1975.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	5.3915838968477	5.38965024026661	5.29473239234353	5.50788992337456	5.48058320721803	5.48148375564811	0.244595923126939	0.457695121719844	0.812459311871812
Merged-chr5-138659106-4	chr5	138658600	138659600	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36241.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	2.34034800714174	2.34012966210605	2.5781674693229	2.24895472945953	2.45837835390963	2.3369604799111	-0.41594620361768	0.624040242829883	1
Merged-chr10-118098825-2	chr10	118098294	118099294	+	719.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-42993.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.54510626319846	7.36646288742548	7.56092011275965	7.28003534127807	7.44823095991557	7.15870939947232	-0.268090434967969	0.26153736389885	0.659274772798192
Merged-chr11-48818518-4	chr11	48818017	48819017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	6.96525067023273	6.88632528220619	6.64000719155572	6.91173173351055	7.35332354610404	6.84648701036664	0.343255899606832	0.224166093602002	0.618982289654058
Merged-chr5-125306561-4	chr5	125306061	125307061	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	PB1D9|SINE|Alu	34533.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.19302510560217	4.99233083283981	5.05413105551313	5.3966413068422	5.95004774747638	5.26275520614868	0.992318770097204	0.0107160036925224	0.105496596692783
Merged-chr4-135973242-4	chr4	135972756	135973756	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-662.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	6.86861072359847	7.19770107743176	6.9608504684592	7.04556875531281	7.08507262804434	6.88992084376308	-0.0085840783839949	0.9731027446613	0.993943197210219
Merged-chr16-91880693-4	chr16	91880197	91881197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50933.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.09414882728446	6.85416975265987	7.09192793036689	6.85333752791613	7.06127956185228	6.72162271242329	-0.181568174712468	0.486272593861269	0.827743750051316
Merged-chr18-4924200-3	chr18	4923703	4924703	+	905.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111717.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.05057026658866	3.0277913123679	3.55657814569493	2.95408100235406	2.78748307984148	3.05062320529887	-1.33894261591059	0.0645719474456693	0.331149621143867
Merged-chr14-45318712-4	chr14	45318201	45319201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015774)	promoter-TSS (NM_015774)	-129.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	7.12307493112289	6.76933141925448	6.94322807114474	7.12496711676194	6.70155327585443	6.66385639401776	-0.159017013602409	0.572573150161726	0.869889644472579
Merged-chr10-77562543-2	chr10	77562043	77563043	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 14 of 15)	intron (NM_008404, intron 14 of 15)	-19112.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	2.05888748756563	2.17546774418437	2.15427539695476	2.23040436227229	2.13460458573653	2.35959961215386	0.789405974131614	0.372080518392291	1
Merged-chr4-132567571-4	chr4	132567082	132568082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	3515.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	6.92851384603857	6.6413747292537	6.10955308534038	6.5173654378898	6.33951968172571	5.73600265666559	-0.587079983537517	0.11317874490052	0.44938889230771
Merged-chr9-58954614-3	chr9	58954133	58955133	+	948.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 7 of 28)	LTR41|LTR|ERVL	81808.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	4.00850233492082	4.32166117172145	4.27684111506384	4.26278073519093	3.89471393889608	4.30077088768376	-0.14338441971495	0.774387477433637	0.944465777765861
Merged-chr5-29974171-2	chr5	29973671	29974671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38943.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	3.80595747689639	3.47259130060894	3.59428590311334	4.02835491874006	3.91421902658611	3.88087119319609	1.00269481170946	0.0672589387872445	0.339137666469697
Merged-chr7-132859253-4	chr7	132858750	132859750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	25.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	7.61442978296434	8.17280941463503	8.09931886859238	7.93683091711575	7.98846061635921	8.14210855225389	0.0542153622086482	0.829685698225751	0.960134151531511
Merged-chr5-31611449-2	chr5	31610949	31611949	+	581.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-2502.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	3.7778055071809	3.87692067644201	3.79086382434387	4.04877369306511	3.70046693357705	4.19116477448897	0.521037175873522	0.331657264064362	0.72297130356206
Merged-chr6-31168342-2	chr6	31167795	31168795	+	634.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	50179.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.27678355523974	3.00088244146984	2.94316091976783	3.07815855169699	3.04653631515281	3.31011220784963	0.25348236636825	0.709984956930311	0.924166640014037
Merged-chr4-117130390-2	chr4	117129901	117130901	+	823.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 12 of 15)	exon (NM_013807, exon 12 of 15)	3562.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	2.7589994911591	2.491955353854	2.49413786562926	2.87861258416657	2.543694142847	2.7662285556938	0.782380562442355	0.330237224221794	1
Merged-chr14-25780805-4	chr14	25780310	25781310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11954.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.09015684914028	3.94550148335655	4.38121072793049	3.98108872436725	4.04402447646615	3.79887689056561	-0.554485806655349	0.284945741966264	0.682535905581946
Merged-chr13-64403676-3	chr13	64403131	64404131	+	565.166687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-28922.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	4.41697078982307	4.0705868564478	4.43809393494446	3.63024085124272	3.5877932727197	3.88398715009807	-1.92254042240079	0.000378140721944692	0.00841967706491141
Merged-chr8-25784479-3	chr8	25783998	25784998	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026121, intron 1 of 4)	intron (NM_026121, intron 1 of 4)	711.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	4.65144760857605	5.0879486777284	4.83993394012675	4.63807247777347	4.63894243945881	4.63055505789959	-0.554383726998729	0.181392883198437	0.563710810769873
Merged-chr14-34311248-4	chr14	34310741	34311741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029389)	promoter-TSS (NM_029389)	514.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	7.53676989298981	7.72687320844641	7.56569930436483	7.66302905091629	7.52664498916867	7.60331824562076	-0.0260509804486735	0.907438515261831	0.978933813614583
Merged-chr9-111049606-1	chr9	111049106	111050106	+	547.0	f1_balb.idr	Intergenic	RLTR31_Mur|LTR|ERVK	7638.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.24385437511548	3.10680371785402	3.18065827233096	3.1282724455619	3.18598941561028	3.19456406259862	-0.0352425381088044	0.955522176791891	0.989763164889919
Merged-chr10-4601245-4	chr10	4600758	4601758	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10731.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	5.98007156652089	5.4707315104486	5.61179101616923	5.54621086566663	5.17203456277731	5.70052894748433	-0.429581158778745	0.246133710999778	0.643265714707881
Merged-chr3-127791002-4	chr3	127790519	127791519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 1 of 2)	intron (NM_001356430, intron 1 of 2)	362.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	8.63487706613354	8.53835993054271	8.41093010125226	8.40722466117643	8.59669130705093	8.08770083284956	-0.201300608076791	0.390443040174488	0.769604839192826
Merged-chr10-117715372-4	chr10	117714879	117715879	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-4621.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	5.78643268004823	5.72169929907164	5.94809359916715	6.12582218925157	6.27184377873616	6.24436235103143	0.697937569876564	0.016870676326077	0.144154368016042
Merged-chr11-48787014-2	chr11	48786514	48787514	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-13346.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	4.21545774687737	3.94171388232293	3.80412204236874	4.27930242312865	3.87300031026663	4.31232550843255	0.452082787768804	0.395221214299763	0.772579826044138
Merged-chr7-19308739-4	chr7	19308216	19309216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 1 of 4)	CpG	1329.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	7.77752494884808	7.86085167553347	7.56232170349733	7.50312343548514	7.86197092388984	7.69465143952665	-0.0666338154818583	0.780984822181459	0.946107841200993
Merged-chr4-43656542-4	chr4	43656040	43657040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026871)	promoter-TSS (NM_026871)	-95.0	NM_026871	68917.0	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	5.52229842775529	5.68489975075223	5.726656920899	5.76701291186833	5.84651505922738	5.3811169942465	0.0931146422810873	0.781947236544287	0.94634558043998
Merged-chr7-97579713-4	chr7	97579193	97580193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	-196.0	NM_001177947	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	6.43068007786801	6.28945945905365	6.51202889180299	6.53006168376975	6.43649568595523	6.4468558407784	0.103362820349888	0.69943227492002	0.920619136555148
Merged-chr18-35094143-4	chr18	35093627	35094627	+	761.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24785.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	3.72068410199883	3.92462747611226	3.83188098280213	3.9582991913863	3.47712081735915	3.95022976516546	-0.0677132642499405	0.904523521423033	0.978135226919758
Merged-chr9-75406499-2	chr9	75405999	75406999	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	2860.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	3.69553408955579	4.07286036958253	3.8842094719602	4.12634491735123	4.23389990417403	4.63859378401925	1.26421386058783	0.0168299909683313	0.143961560742192
Merged-chr10-75781207-6	chr10	75780684	75781684	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133994, exon 1 of 5)	5' UTR (NM_133994, exon 1 of 5)	230.0	NM_133994	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	4.62331262208466	4.55733021787986	4.18712792074379	4.20524544238108	4.34967508636267	4.39741510451948	-0.416161827746628	0.367927730855517	0.752923975674939
Merged-chr4-59888189-4	chr4	59887665	59888665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 6 of 8)	intron (NM_172468, intron 6 of 8)	26891.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	4.70429683421436	4.68194361573648	4.50587401473499	4.21786340432314	4.37805501020264	4.65323468473957	-0.543709797582382	0.219005888089448	0.613128894826908
Merged-chr15-89426879-2	chr15	89426379	89427379	+	584.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 9 of 27)	non-coding (NR_004843, exon 9 of 27)	-1017.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	3.1204065935513	3.00370331216294	3.70543446648769	3.27686863843998	3.01111832317855	3.43676952258807	-0.230668000082047	0.746207288951712	0.936295198659339
Merged-chr17-62558389-4	chr17	62557897	62558897	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	322920.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.42780092572642	4.77500324346844	4.48998844571498	4.68942961060127	4.78403952772725	4.22190750761628	0.0514869349056068	0.912440155974812	0.980363124210176
Merged-chr4-70409844-2	chr4	70409344	70410344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313762, intron 1 of 33)	intron (NM_001313762, intron 1 of 33)	591.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	5.06060443491861	4.92635462026888	4.80171194615155	4.95840548179925	4.71672487400791	4.74822580453497	-0.286823896150599	0.466201117540884	0.817423773355147
Merged-chr9-44462170-4	chr9	44461729	44462729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7462.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	6.75679198747714	6.68899072470905	6.7113897581541	6.70148343225356	6.94993579816965	6.60375849152042	0.0809226810817772	0.757722919841338	0.939901739924837
Merged-chr13-37594828-1	chr13	37594328	37595328	+	601.0	f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-231210.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.53575423853847	6.04288445616013	6.53906646453514	6.63666121928097	6.57539552958228	6.71087252153948	0.405337911711991	0.16661018521932	0.542043333270612
Merged-chr3-103915087-4	chr3	103914633	103915633	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356556, exon 1 of 8)	exon (NM_001356556, exon 1 of 8)	1013.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	7.57176553956656	7.98083932718533	7.56838238664898	7.68354773427091	7.84016026985124	7.90383369903286	0.119072360720751	0.627721183383666	0.893339236443994
Merged-chr16-91056788-2	chr16	91056288	91057288	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163695, intron 1 of 1)	intron (NM_001163695, intron 1 of 1)	12357.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	3.95445069912903	3.7920720913499	3.4885275206701	4.06629472270708	3.8206618191918	3.68269393672984	0.322256434318509	0.575820937000147	0.87142885060749
Merged-chr3-88632306-4	chr3	88631761	88632761	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 3 of 21)	intron (NM_001198913, intron 3 of 21)	10867.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	3.69232997668374	3.31977806793511	3.81788495540902	3.26316581206673	3.32889253614661	3.43387099846517	-1.04175218095859	0.0933807875202686	0.407088157154892
Merged-chr4-141606079-4	chr4	141605584	141606584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-32.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	6.75432989825474	6.68686174148482	6.14479116433094	8.12482899877376	8.48001605835903	7.8300977341444	2.36916658747429	3.09949992467867e-14	7.72010209431533e-12
Merged-chr4-3687050-2	chr4	3686592	3687592	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	B2_Mm2|SINE|B2	8971.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	5.30408044275309	5.22628305997962	5.61345553402112	5.87697923119846	5.96841919256553	6.17514119688746	1.15726368581869	0.000454658631081644	0.00975283201212721
Merged-chr12-73658647-4	chr12	73658150	73659150	+	943.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	Charlie1a|DNA|hAT-Charlie	73854.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.60981387823005	5.17129700003734	4.95287695233579	4.88519675060242	4.76014875172883	4.53827187995146	-0.432534378871204	0.316719896817651	0.710742716211415
Merged-chr2-181091017-2	chr2	181090517	181091517	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003824, intron 10 of 16)	intron (NM_001003824, intron 10 of 16)	44272.0	NM_001006668	16536.0	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	2.22148595228711	2.15720314012681	2.28439050521047	2.53492829635299	2.31327346914433	2.4907178397222	1.55658996327915	0.0726315826763657	1
Merged-chr1-191850334-3	chr1	191849842	191850842	+	919.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28869.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	6.65238032403786	6.97093744630758	6.24819185012529	7.12234307016428	7.06352058513519	6.47981611581252	0.400726897441642	0.226831893621771	0.621805389547228
Merged-chr2-181241074-4	chr2	181240589	181241589	+	814.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 1 of 18)	intron (NM_183162, intron 1 of 18)	938.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	6.31040816372817	6.09340003111692	6.43414994273834	7.24078001015242	7.33989827974645	7.38072712019648	1.6273436202859	2.8605667116572e-10	3.43466139889715e-08
Merged-chr14-47358159-2	chr14	47357676	47358676	+	788.666626	f0_balb.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15684.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.35839339163569	5.26800462477199	5.47708754877611	4.23332414188553	3.96961446545999	4.40088521424104	-2.8844171625885	1.35695913894659e-10	1.76697740271467e-08
Merged-chr4-98109243-4	chr4	98108721	98109721	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	274044.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	3.02112717820391	3.29107900459903	3.37741856574351	3.19898470714721	2.98622408516196	3.39508936033108	-0.156673126991169	0.815125937277248	0.956370078970016
Merged-chr9-90271676-4	chr9	90271194	90272194	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194334)	promoter-TSS (NM_194334)	-925.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.46339241937959	5.99336279257642	6.18895009879713	6.79475920051444	6.68168207063657	6.9372845757754	0.916592567079286	0.0016261586878969	0.0263721309044538
Merged-chr13-119615350-2	chr13	119614850	119615850	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8469.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.58297134877439	4.66633158934475	4.63949486155439	4.00621249686481	4.41637506346457	3.91048281875878	-1.24975417923941	0.0140578507141286	0.127181299987632
Merged-chr11-82954506-4	chr11	82954028	82955028	+	878.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 1 of 5)	MER89|LTR|ERV1	2426.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	4.47722492579748	4.52631326611515	4.50259648365583	4.83661856137345	4.92167938565096	4.6556978386219	0.747782700922814	0.0678515317437969	0.340888193052642
Merged-chr13-37506267-4	chr13	37505788	37506788	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160943.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.44073778214621	4.04358744745224	4.08401140515816	4.22395641356669	3.58381871605993	3.78763335783025	-0.900630232701967	0.113584841129015	0.450205661918882
Merged-chr9-108937588-2	chr9	108937088	108938088	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025407, intron 2 of 12)	B4A|SINE|B4	940.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	4.68527815985904	4.25799964088194	4.68071183725869	4.58542709099929	4.70090261049989	4.74622568794429	0.304945018380386	0.485597057252447	0.827504186777075
Merged-chr4-102647222-4	chr4	102646662	102647662	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57319.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.87629941056661	6.08116777552985	6.14929105141764	6.03054427989136	6.38409141057396	6.18869197472413	0.309326039465986	0.303263584935971	0.699896355683373
Merged-chr1-39368842-3	chr1	39368350	39369350	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	999.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	6.66602605122241	6.67806274095889	6.48117424868606	6.77320287841683	6.63585928373759	6.50369158396784	0.0455346883919624	0.863224828659363	0.968208989562349
Merged-chr1-152756639-3	chr1	152756133	152757133	+	697.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081197, exon 2 of 2)	exon (NM_001081197, exon 2 of 2)	6082.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.86299398270479	3.97492031881086	4.00543905636036	4.04273604772633	4.09019106998521	3.92585593245119	0.241428235365553	0.62561224061062	0.892530404580079
Merged-chr3-8986512-2	chr3	8986012	8987012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	17692.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.32547682943386	5.67887168112227	6.19213427347429	6.70174222031449	6.18500449371264	6.49830783858042	0.633563938641557	0.0619231069055762	0.323101390819539
Merged-chr2-170147850-4	chr2	170147287	170148287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5112.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.68314770377958	5.66980757194996	5.91463431148937	6.01422046212523	5.97365317397678	6.41052626032681	0.674141461717086	0.0343385443801411	0.226873241288136
Merged-chr3-108844874-2	chr3	108844384	108845384	+	664.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-4382.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	2.81320509904375	3.10389364747408	3.00305441106843	3.0143303389033	2.98564946446006	3.24545176251769	0.460615825773932	0.50458125208261	0.837779945574363
Merged-chr6-86792985-2	chr6	86792487	86793487	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	597.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	6.08871085815233	6.41660728709124	5.79776736345634	5.65199488509919	5.86341936661881	5.29972206417918	-0.870933498751201	0.0166365950666622	0.142887882153884
Merged-chr8-115487016-3	chr8	115486529	115487529	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E1|LTR|ERV1	219865.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.67260891830011	4.4873390262604	4.76399049831104	4.68278775194031	4.86088135137563	4.63310962897071	0.23100231195366	0.576472178658263	0.871585692229598
Merged-chr9-62838050-4	chr9	62837563	62838563	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-724.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	6.45272044252058	6.47911374467714	6.56168875161684	6.53954129354854	6.63362221145911	6.46164992561146	0.0932720075544972	0.721514120362097	0.928503945058713
Merged-chr6-72025669-4	chr6	72025169	72026169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	16859.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	4.52419078742335	4.39445778385391	5.02824354260013	4.56730309854824	4.52878820193638	4.7196937544218	-0.147611513324787	0.745008201606824	0.936032341688524
Merged-chr4-43025602-4	chr4	43025110	43026110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020035, exon 1 of 10)	5' UTR (NM_020035, exon 1 of 10)	164.0	NM_020035	56703.0	Mm.143738	NM_020035	ENSMUSG00000028454	Pigo	PIG-O	phosphatidylinositol glycan anchor biosynthesis, class O	protein-coding	5.93130737554379	5.86128786076591	6.04740291899627	5.55485310942505	5.79125685417285	5.90712224407514	-0.335506535615964	0.282043315090475	0.679908771156903
Merged-chr6-6307789-1	chr6	6307289	6308289	+	659.0	f0_balb.idr	intron (NR_136905, intron 1 of 3)	intron (NR_136905, intron 1 of 3)	59130.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	2.53031811928234	2.74227628868571	2.78834779723314	2.4953022364794	2.31600387247868	2.86103273333534	-0.635588854197833	0.456368273110391	0.811572799080346
Merged-chr7-45082910-10	chr7	45082419	45083419	+	986.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026555)	TTS (NM_026555)	9294.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	6.79266296433638	6.82596966346298	7.02305688169263	6.93192918342905	7.00263756077356	6.78416342845623	0.0590144637632957	0.814991567335845	0.956370078970016
Merged-chr6-97151307-2	chr6	97150807	97151807	+	612.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081111)	TTS (NM_001081111)	-2424.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	5.04571891821476	5.20594342689864	4.6405747146508	5.02542682870547	4.65042924419582	5.12617879337319	-0.119798247941368	0.779937285648404	0.945949149660645
Merged-chr7-139295837-4	chr7	139295337	139296337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47355.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	5.62249090818711	5.73986540459719	5.41173638685604	5.40504884345065	5.59614350382608	5.38066365317131	-0.255243747121281	0.449153263015522	0.807594795348397
Merged-chr19-23140254-4	chr19	23139756	23140756	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-970.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.40571134700556	6.936837534393	6.78588346108757	6.94154829568746	7.14813971196703	6.87434057397848	0.41664392002502	0.140368814341436	0.500699117062725
Merged-chr10-29231816-4	chr10	29231322	29232322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20179.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	3.78705475827925	3.82220404473862	3.54857172646975	3.86120185325827	3.5667565306719	3.73145991223575	-0.0322617857242716	0.953800410675214	0.989446911725587
Merged-chr10-67113112-4	chr10	67112618	67113618	+	740.141663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-14140.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.38379093714177	4.76105933186771	5.08725119099409	5.04031387904861	4.59249903699725	4.74443700369834	-0.65159130907467	0.132534899460087	0.487133411718422
Merged-chr11-116609637-2	chr11	116609137	116610137	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167680, intron 2 of 18)	intron (NM_001167680, intron 2 of 18)	14615.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.66747096445869	3.39234732604805	3.80419527971401	3.51225202023625	3.47029335404443	3.62551545130651	-0.326573628272735	0.574320223640996	0.870582911329883
Merged-chr5-24426767-4	chr5	24426270	24427270	+	982.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-751.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	3.30344836902383	3.69071138952314	3.64088346313421	3.64455732505742	3.38361405513515	3.65943866076656	0.0286098438185515	0.961909355128603	0.990691557558141
Merged-chr2-90939955-4	chr2	90939470	90940470	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-427.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	4.38045347927505	4.03832540098441	4.3644009254963	4.34508288375661	4.20410209885381	4.51286999643046	0.227236193635091	0.630537343622183	0.894734411238057
Merged-chr12-55446776-3	chr12	55446257	55447257	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45890.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.58581290517607	4.54565600065193	4.48807997156096	4.80471118817324	4.5241373436524	4.42168601034416	0.13202891031789	0.758742857320833	0.940287421764314
Merged-chr2-60211328-2	chr2	60210828	60211828	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	B1F1|SINE|Alu	1392.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	6.44772859006008	6.2569377612066	5.85694863210305	6.25388186208461	6.17843890732075	5.86606369852301	-0.175246351144549	0.58888465662472	0.876650937479947
Merged-chr17-28247819-4	chr17	28247323	28248323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	15069.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	4.15161177596561	3.8470770400626	4.24388191682267	4.16204839505935	4.25044761888419	3.76102923331263	-0.00852543881689512	0.987289723883753	0.997218304929226
Merged-chr8-46886366-4	chr8	46885861	46886861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100526.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.94513794247948	6.4324077932375	6.64749788020748	6.94134058335838	6.90183266694556	6.80226326540769	0.295828911728606	0.286489784973167	0.683725296730741
Merged-chr9-44398646-1	chr9	44398146	44399146	+	558.0	f1_balb.idr	intron (NM_001357730, intron 2 of 9)	intron (NM_001357730, intron 2 of 9)	470.0	NM_008063	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	2.71534600167802	2.93620653606874	3.04918012552254	2.64945617368284	2.65936231104576	2.83264236836692	-0.994901433490848	0.18261947823466	0.565440922476101
Merged-chr3-61367248-3	chr3	61366745	61367745	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	2738.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.08013656286875	3.69337427289718	3.82115164595682	3.93039315418907	3.88067566391277	3.78607497027833	-0.027170259758805	0.959299621579005	0.990174309444982
Merged-chr4-116824747-4	chr4	116824226	116825226	+	749.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3218.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	5.66310295173847	5.60452661291056	5.49640516742873	5.29499784605306	5.57531601800023	5.47090391282729	-0.260083463759236	0.434081078881782	0.79814689082248
Merged-chr10-111674033-2	chr10	111673533	111674533	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-79760.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	2.91636964207642	2.95819589467722	3.01961750060359	3.0555272245108	2.99413384068345	2.91013566330291	0.127354199062499	0.850127856825779	0.964816327874291
Merged-chr3-81120870-4	chr3	81120324	81121324	+	781.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	84408.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.06491896623023	3.96395643751148	4.27807638396201	3.76565594028172	3.89027272369218	4.03837632354999	-0.607670614375889	0.233031415901577	0.629425373444732
Merged-chr7-120842808-4	chr7	120842306	120843306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007908)	promoter-TSS (NM_007908)	-25.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.93186320081523	5.99741958647032	5.76731095957679	5.75695834025563	5.76911953694342	5.20130759692993	-0.521807175441189	0.135176581920796	0.491294119824757
Merged-chr4-140985637-2	chr4	140985137	140986137	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1236.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	2.19514961824646	2.09493798870011	2.06920055426601	2.21450952029325	2.09185081046448	2.34145094295055	0.674922797688874	0.451992060118706	1
Merged-chr3-27317732-3	chr3	27317248	27318248	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009425, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	671.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.54656109559989	5.4987395915017	5.47886151382878	5.39110188934701	5.81056769975952	5.51253230318828	0.161816843525978	0.633618537227112	0.896059441151508
Merged-chr2-167015294-4	chr2	167014807	167015807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	-6.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	6.88216679895367	7.14241162996888	7.04912097982243	7.21950738531032	7.24670173024236	7.08080966996639	0.240999441846074	0.323451301986601	0.71668986599242
Merged-chr12-3834652-4	chr12	3834156	3835156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	27496.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.73333079316081	6.48771768989078	6.40002295610978	6.88833343456147	6.66776357251956	6.20594253867933	0.118586223206782	0.700242422701268	0.920919335036368
Merged-chr15-27876618-4	chr15	27876113	27877113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	149235.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.67185360407446	3.76467578348379	3.64372271050837	3.7788008632526	3.71451894235169	3.6046963103079	0.0242808808390569	0.964192915637695	0.99136955681517
Merged-chr7-75855300-2	chr7	75854800	75855800	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029652, intron 1 of 2)	intron (NM_029652, intron 1 of 2)	6962.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.33302938213342	3.0820737030155	3.12857637256577	3.2742959826602	3.4624732535978	3.2618974510993	0.619310903021431	0.332335615248262	0.723521765316285
Merged-chr6-97175927-4	chr6	97175446	97176446	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081111, exon 2 of 17)	exon (NM_001081111, exon 2 of 17)	3178.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	4.62258556243908	4.50965868766526	4.70922406820184	4.05717690679163	4.68009027376474	4.97961838414798	0.024191864749151	0.961502133324052	0.9906104219708
Merged-chr4-32373356-4	chr4	32372819	32373819	+	990.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44116.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.53925534811388	3.71103814992365	3.713113616495	3.47462123328516	3.32806839819047	3.73271762535779	-0.509427978476153	0.383131196953691	0.764535004943228
Merged-chr15-96288664-3	chr15	96288189	96289189	+	705.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175251, intron 2 of 20)	intron (NM_175251, intron 2 of 20)	1167.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	5.29652570575997	5.8065393276783	5.44782417985032	5.60771950954527	5.68506814459718	5.73389798335523	0.244619837774808	0.480277127387786	0.824537487093219
Merged-chr2-129371148-4	chr2	129370635	129371635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008361)	promoter-TSS (NM_008361)	4.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.26412011665492	4.75735024163539	5.40393501137713	5.75450040322636	5.44113903908577	5.75774077373878	0.957936617131173	0.0135113895659242	0.123759532542648
Merged-chr4-150282190-4	chr4	150281656	150282656	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	240.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	6.68520570397848	6.89569747701875	6.67145098461615	6.79790910723514	6.79188469520905	6.44356159798105	-0.09569986052084	0.723971436618117	0.929178878081464
Merged-chr15-84986737-4	chr15	84986249	84987249	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	1222.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.33254032314447	6.607761212259	6.35574009563613	6.464683971983	6.45295332321278	6.25341489238327	-0.0702566460620293	0.801214867891171	0.952855483055893
Merged-chr1-64200677-4	chr1	64200175	64201175	+	844.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79286.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.70447206767954	4.79234611027504	5.10357965584337	4.891022327772	4.97221717231695	5.31630171964873	0.427011448962037	0.290407425154764	0.688204062208864
Merged-chr4-132606043-5	chr4	132605646	132606646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32900.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.63912380390824	6.62303055606502	6.85787924721843	6.92884962959916	6.72356148109605	6.41635779395024	0.0156203914284087	0.955531679310295	0.989763164889919
Merged-chr7-19256760-3	chr7	19256267	19257267	+	674.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001282021)	TTS (NM_001282021)	15087.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	3.07148752118562	3.33516044106863	3.47453815027986	3.24698776969092	3.30269072485665	3.2157038751607	-0.16678453519792	0.794040371636856	0.950531747588938
Merged-chr11-97363519-4	chr11	97363020	97364020	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	969.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	7.42100113640433	7.27252451381456	6.78757016575535	7.26724902886001	7.29453609025166	6.81365275010407	-0.068697983087195	0.816204661590096	0.956616423430214
Merged-chr11-61751838-2	chr11	61751338	61752338	+	960.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	B3|SINE|B2	10250.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	3.89472960067255	3.74809803262742	4.26179459358828	3.93361222363006	3.68913399031437	3.97993135545075	-0.333506822403473	0.539788626439725	0.856111398039205
Merged-chr12-52119864-2	chr12	52119364	52120364	+	660.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	MLT1G|LTR|ERVL-MaLR	22118.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	3.57490607717017	3.8528392615722	3.67083444315868	3.67285426771167	3.38943512304853	3.40563273026569	-0.744689087366625	0.202593287034446	0.59252027125208
Merged-chr2-160237038-4	chr2	160236538	160237538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90456.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.62750741120809	6.54885260516461	6.69965682041205	6.50243198873805	6.77015197566525	6.61270783403647	0.0257611383393647	0.922035849668244	0.982542868764899
Merged-chr17-23726397-4	chr17	23725912	23726912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023058)	promoter-TSS (NM_023058)	76.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	5.27702839522175	4.87331815290258	5.28617708256813	6.36409480258625	6.29031254571856	6.01565465239167	1.99981659952151	4.96093001195656e-09	4.85063530475771e-07
Merged-chr13-17781995-4	chr13	17781505	17782505	+	975.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027118, intron 1 of 13)	L1_Mus3|LINE|L1	23092.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	3.52460505114988	3.21084129682363	3.36791570608521	3.66147444176873	3.58983055220206	3.55301986732424	0.84026385558596	0.15763317972369	0.52908202861787
Merged-chr1-139422263-4	chr1	139421770	139422770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172643)	promoter-TSS (NM_172643)	-113.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	7.1567579636325	7.28643820720358	6.86279528877462	7.1433050400243	6.9346579479558	7.16582774764959	-0.0655335248068245	0.800453235892976	0.952548737910568
Merged-chr4-88720468-4	chr4	88719973	88720973	+	904.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	2035.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	5.70355400082218	6.12978920445917	5.71534532938732	5.75504533236731	5.98127253850344	5.77780004170466	-0.0461858919495974	0.888335611105787	0.97401529899353
Merged-chr11-95853088-2	chr11	95852588	95853588	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-5729.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	4.87004495051356	4.6971016473125	5.23223065281953	5.45224840717922	5.39205042330257	5.16686266124711	0.853381380271739	0.0276390148384812	0.198360112703152
Merged-chr5-102033477-4	chr5	102032993	102033993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36428.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.51161662585486	7.28246653511467	7.6822537924667	7.52816288411007	7.88462920455392	7.55412286647065	0.256011176752842	0.311677581611569	0.706631105711982
Merged-chr18-60712309-4	chr18	60711807	60712807	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	15259.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.01300489428712	4.98528653378484	5.0634100151801	5.06618139840712	5.0811398842873	5.19326136820256	0.195719436672429	0.588233903533894	0.876237788811978
Merged-chr17-45752269-4	chr17	45751773	45752773	+	918.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	17767.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.3546196556254	4.10528720413267	4.33580154750127	4.57968973015647	4.14449546974602	4.07093499559857	0.0554796045496494	0.910248211457229	0.97984424692051
Merged-chr11-98202870-5	chr11	98202462	98203462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109626)	promoter-TSS (NM_001109626)	-343.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	8.62759121658658	8.83534397791927	8.26121883047969	8.48540108999624	8.67595086417594	8.66484661067371	0.0118611586880838	0.960370589116134	0.990380695859216
Merged-chr6-15757307-2	chr6	15756807	15757807	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	Lx|LINE|L1	36646.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.61576497888397	3.69408776939463	3.55416847342146	3.42404470315161	3.48944338077731	3.27978779043236	-0.806172450295055	0.172382450341414	0.550874826947324
Merged-chr18-39612166-4	chr18	39611668	39612668	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124923.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.39946880107534	5.71068460858956	5.33431119111954	5.76978630472408	5.75513005479395	5.39910492090615	0.299237996682999	0.391702549855492	0.770697227911463
Merged-chr9-90053742-2	chr9	90053242	90054242	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007801)	promoter-TSS (NM_007801)	-525.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.0085437689249	5.00548095543042	5.14028912979905	5.50015334437456	5.51234416967429	5.42622044972206	0.879186848131368	0.010518016705803	0.104039839997202
Merged-chr1-86487548-4	chr1	86487017	86488017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39040.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	6.51439777504839	6.51853501248464	6.41490979244232	6.39834402328485	6.63326698988515	6.56409204069792	0.0824848068992783	0.756354186877167	0.939573416808291
Merged-chr1-105866899-4	chr1	105866406	105867406	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86183.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.7372109989917	4.82574707513368	4.87812514462363	4.93691451131721	5.05773825661661	4.79072738527231	0.291957735837634	0.451275146086011	0.808957790071745
Merged-chr5-38039252-4	chr5	38038746	38039746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	16.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	6.63906153161817	6.74216216967912	6.20414081833291	6.43377802980069	6.28265176964576	6.03077094960505	-0.477574158730779	0.120257695218999	0.463731685224882
Merged-chr9-109000931-4	chr9	109000425	109001425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	9023.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	2.85652109024547	2.84532457697849	2.87078026284015	2.90319840908176	3.05733279875026	3.12022888059319	0.822025399283668	0.231344617394983	0.627189055416517
Merged-chr2-36136751-4	chr2	36136263	36137263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026434)	promoter-TSS (NM_026434)	-59.0	NR_027515	67889.0	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	7.90563578850674	8.2875329745127	8.03917130625046	8.33556357205279	8.39079364760904	7.98181465851061	0.231406806275394	0.340028810608761	0.72967866276074
Merged-chr12-108990647-4	chr12	108990182	108991182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	77535.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	5.3003566904653	5.52345790031265	5.43839770982024	5.46296397541948	5.3976413810859	5.31698526744049	-0.0534689925072183	0.874015464838156	0.970541268701535
Merged-chr10-88623711-3	chr10	88623209	88624209	+	907.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18557.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	4.82936214860534	4.69744832301967	4.71813784168442	4.19773360172287	4.5470340492377	4.31626543914466	-0.924628581085407	0.0370783231913866	0.237579941175797
Merged-chr2-146517076-4	chr2	146516568	146517568	+	925.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5064.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	2.73026096960951	2.94251111749391	3.03168290938924	2.8844900586967	2.87961749501315	3.0462534620061	0.15118700068133	0.829960848745805	0.960147678789899
Merged-chr17-46546356-4	chr17	46545855	46546855	+	902.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081335)	promoter-TSS (NM_001081335)	33.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	5.25853189054819	5.14620107064992	4.6693710741212	5.04935175127723	4.97564457607146	4.86463393637945	-0.200812893414674	0.621297008435807	0.890659217105386
Merged-chr15-25271018-2	chr15	25270518	25271518	+	634.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.09529767947212	3.11935639953463	2.83113213307119	3.11469889617767	3.05083217430887	3.09478391303241	0.258782439369568	0.705566755959993	0.922833138890237
Merged-chr17-22225646-4	chr17	22225175	22226175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205095)	promoter-TSS (NM_001205095)	-61.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	7.05112581670558	7.8047822292494	7.04790904329728	7.61728961900716	7.73052984268524	7.38159015249838	0.326289236127629	0.288834694420805	0.686216407885285
Merged-chr1-191852082-2	chr1	191851582	191852582	+	633.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30609.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	3.43220291247057	3.21181746606992	3.26822775697163	3.42585862512588	3.40220065022016	3.39783732770068	0.38740311448982	0.520991906680798	0.84689174359412
Merged-chr6-66896377-4	chr6	66895888	66896888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177557)	promoter-TSS (NM_001177557)	-9.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	6.03873838539395	5.95779264880833	5.38077004324378	5.92830347630575	5.6169267343247	5.37789310936241	-0.304541983874945	0.415722834180298	0.786603847034844
Merged-chr5-121330535-1	chr5	121330035	121331035	+	649.0	f0_c57.idr	intron (NM_181421, intron 49 of 75)	IAPLTR2a|LTR|ERVK	54874.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	3.19348848231432	3.15377137112886	3.52475187277103	4.83936611062524	4.52317078076806	4.73686546392761	7.05694925092464	9.33125423675296e-09	8.51354169442698e-07
Merged-chr9-96325735-4	chr9	96325235	96326235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	37980.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.21850555289485	3.23293888969523	3.19952897439097	3.7345761694393	3.64886554899255	3.50489501398166	1.66991387717525	0.00611176124508392	0.0707003238816826
Merged-chr13-91223174-4	chr13	91222668	91223668	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	819.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	6.35127368332746	6.21829922053876	6.04889381019966	6.42872363677028	6.58790403417592	6.11043681083188	0.303911986732888	0.310730181165747	0.706022433069834
Merged-chr17-24692594-4	chr17	24692085	24693085	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023040)	TTS (NM_023040)	-2636.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	4.05053255221958	4.08968949539914	4.3771917827247	4.05279571480176	4.33283139655799	4.31823043473458	0.195943677057101	0.68433995799733	0.915853993305035
Merged-chr9-90198825-6	chr9	90198422	90199422	+	909.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35944.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.05516132065397	3.01086680201481	3.20697007743395	3.48729956301019	3.31541828901071	3.16076676553779	1.02654063284146	0.112655298100542	0.448338447691312
Merged-chr13-55369760-4	chr13	55369253	55370253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016758)	promoter-TSS (NM_016758)	21.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	4.88519217021112	4.65813903866487	4.84932060782509	4.64149685454784	4.50957867664336	4.68835164687281	-0.44686678364179	0.273324978054594	0.670583068670695
Merged-chr1-144268175-8	chr1	144267649	144268649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-19045.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.19967790998924	7.48755614434366	7.2240456511709	7.23288157069771	7.44475280660191	7.30488644226744	0.0282864907779839	0.907553933414741	0.978944097635128
Merged-chr5-31453891-2	chr5	31453391	31454391	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360000, intron 2 of 12)	B1F2|SINE|Alu	1455.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	3.02325954875956	3.03665317307324	3.25022230041458	3.24832887362365	2.94968185010283	3.21030304159187	0.157083671677877	0.813459933430579	0.955940138311315
Merged-chr8-35496146-3	chr8	35495690	35496690	+	795.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-657.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	4.6251909085915	4.81181737223887	5.06477379326574	4.60736152567579	4.77326296149691	5.18572676202809	0.0709759497162763	0.869938790967926	0.96995859587526
Merged-chr5-148485222-2	chr5	148484722	148485722	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66451.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.48141601293606	4.65544003635008	4.2984814764985	4.58762885393148	4.68873538205434	4.16554000196809	0.0441541352441904	0.925619200654989	0.983230173300268
Merged-chr15-98832282-2	chr15	98831782	98832782	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-774.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	6.4939050068616	6.56055077600941	6.68905482864793	6.73865036330042	6.70749931868341	6.88073868519924	0.307356354501306	0.231935038930622	0.628103303982846
Merged-chr7-90032276-5	chr7	90031769	90032769	+	690.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	3110.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.94106775725069	7.109256269936	6.9662681722927	7.20900579531749	7.36828862109668	7.21778863649215	0.392479730863233	0.10089295783042	0.423588538026824
Merged-chr15-53386914-4	chr15	53386405	53387405	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40722.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.62233235428541	3.73189456874686	3.7143832034734	3.39556283544908	3.65974784608062	3.40129286453465	-0.662960066771794	0.255390486660802	0.652536438753136
Merged-chr19-4794699-2	chr19	4794199	4795199	+	604.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	-690.0	NM_001290123	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	6.01020123153977	5.73214953381785	5.95955252388078	6.23586059060843	6.26426375258891	6.04411047275743	0.497251742561006	0.095121067247541	0.411148363215922
Merged-chr14-27374828-2	chr14	27374258	27375258	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	AT_rich|Low_complexity|Low_complexity	13369.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.04352414555144	4.21999659511591	4.16517876965908	4.27093395719338	4.13482561206469	4.88162068697055	0.828936537263429	0.106181017882698	0.435055649792374
Merged-chr7-110843539-2	chr7	110843039	110844039	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	intron (NM_025999, intron 1 of 5)	842.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	6.93812521191626	7.21012282179104	7.27635239809809	7.3181078465144	7.4430409031986	7.22953091779106	0.288237885911545	0.243147686609153	0.640376848445943
Merged-chr18-60382631-4	chr18	60382115	60383115	+	694.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146275, exon 2 of 3)	5' UTR (NM_001146275, exon 2 of 3)	6586.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	5.80004746278758	6.22984874926801	6.38968668769863	5.9660486104067	5.96476668564094	6.30495421218935	-0.129398702502164	0.692946457661771	0.91880752705484
Merged-chr14-9395776-3	chr14	9395271	9396271	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-488324.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.82892538174587	2.66161816944444	2.76798089677333	2.69852544259637	2.66900626891775	2.84079181458506	-0.107187392844473	0.883469356380034	0.973362870329156
Merged-chr10-60351443-4	chr10	60350930	60351930	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4579.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.36278567451935	6.00997133713233	6.10929208394764	6.32117371915311	6.22666320987575	6.29514176476837	0.178692869137598	0.537234657605201	0.854346835765953
Merged-chr13-12258192-4	chr13	12257694	12258694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-81.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	7.45253786666315	7.93788394198709	7.48926092891144	7.54569376925768	7.79704347111689	7.440255713195	-0.0620750526387062	0.814413805877124	0.956292338165527
Merged-chr5-100846395-4	chr5	100845902	100846902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 1 of 12)	CpG	173.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	4.80328749648057	4.71996962389374	4.86474071225327	4.98976012208104	4.52259044667177	4.48199048483925	-0.242379340635955	0.573231213049404	0.869962295500663
Merged-chr10-94771613-4	chr10	94771065	94772065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 13 of 15)	intron (NM_029852, intron 13 of 15)	82775.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	4.18943888534831	3.95956291021864	3.76706588212092	4.2093097202627	4.3490050877631	4.10646418512938	0.675078821050648	0.185750518401151	0.570056029768855
Merged-chr9-21918242-4	chr9	21917733	21918733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324531)	promoter-TSS (NM_001324531)	-50.0	NM_001324531	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	4.92179156862495	4.75695871450247	5.05646904526532	4.59676630829081	4.76548515242969	4.88200754046544	-0.362634300672247	0.365738037270896	0.750755886042233
Merged-chr14-70076195-2	chr14	70075705	70076705	+	591.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1240.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.49317883447289	4.52112542871968	4.25290650169121	4.98251224132778	4.97040255773284	4.65051048661927	1.05370892038944	0.0144510377238413	0.129383958433524
Merged-chr11-114884129-4	chr11	114883620	114884620	+	930.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5921.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.72436344485819	7.49740593956049	7.55649011092911	7.1573585565313	7.24880273254967	7.42418136796367	-0.472417004800215	0.0452603697014672	0.268483983896748
Merged-chr5-66016325-4	chr5	66015809	66016809	+	894.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001127382)	TTS (NM_001127382)	-12024.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	6.47734088221405	6.57161548247432	6.32865372304103	6.59869907999854	6.65394247081108	6.28550655659428	0.102781747440841	0.713318030718521	0.925479342928394
Merged-chr1-36069355-4	chr1	36068866	36069866	+	866.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	966.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.18375279335067	7.52912589362399	7.37880636250261	7.44058513470983	7.43103761942477	7.29069019783533	0.0292580537069783	0.903381721151163	0.977827650905621
Merged-chr18-56566280-3	chr18	56565894	56566894	+	712.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	intron (NM_001162989, intron 1 of 4)	3825.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	4.00392334624916	4.28386926702134	4.45800247694564	4.01340216101801	4.17630692780506	4.63501605429997	0.0988227060491666	0.847540759575592	0.964318271116593
Merged-chr11-83587615-2	chr11	83587115	83588115	+	771.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009139)	TTS (NM_009139)	5472.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	3.11118038538264	3.26348153097821	3.81985051647218	3.29649265841785	3.13707876352701	3.79909645546234	0.0289760499194495	0.967446359889081	0.992555129128888
Merged-chr2-34804537-2	chr2	34804037	34805037	+	662.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013890, exon 8 of 8)	3' UTR (NM_013890, exon 8 of 8)	-4625.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	3.74826425595353	3.65510187753227	3.6714698377648	3.49360497584444	3.83236605203987	3.57931488295198	-0.135853986859865	0.809706556501256	0.954766646166093
Merged-chr2-158176553-4	chr2	158176069	158177069	+	976.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-15439.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	8.08066939188264	8.16017857311101	7.94201434849382	7.98520368487727	8.077640123739	7.67048315515107	-0.193893297411355	0.405201298109792	0.780049815379569
Merged-chr6-24989399-4	chr6	24988882	24989882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33257.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	3.53557036601728	3.42225212185675	3.46798139958923	3.69853304427765	3.67922657399235	3.42435037193573	0.489849509330567	0.395223281166286	0.772579826044138
Merged-chr11-115646690-2	chr11	115646190	115647190	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 5 of 5)	intron (NM_001313936, intron 5 of 5)	-18395.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	3.5907655309389	3.17036487284823	3.54940453839347	3.32249106663675	3.34761953241127	3.61906235170156	-0.0636477353961624	0.919200318012342	0.981979004859879
Merged-chr5-64293865-2	chr5	64293365	64294365	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	MT2B2|LTR|ERVL	63508.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.16216875662566	3.29535667250738	3.69422683442707	3.43472063900938	3.02686831864246	3.56952480482024	-0.144220483213849	0.832440356843002	0.960616839788396
Merged-chr13-40978854-4	chr13	40978337	40979337	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	MER2|DNA|TcMar-Tigger	-22173.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	4.34545352318605	4.35749983868609	4.03161779846859	4.15907750766852	4.06474620150277	3.9985549750306	-0.516490405571074	0.286548113433769	0.683790628426312
Merged-chr1-152592630-3	chr1	152592132	152593132	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	LTR48|LTR|ERV1	32585.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.23422595504646	4.89067500099727	5.37116157217356	5.14086137884137	5.13150151280236	4.98038061453194	-0.166934138602589	0.662567936625292	0.906804932599005
Merged-chr12-102433436-1	chr12	102432936	102433936	+	700.0	f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6377.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.19501934975881	6.45346509819417	6.6367277766793	6.67023267107503	6.53658026892836	6.32034127841756	0.145167663024922	0.616918828502164	0.888607350961806
Merged-chr10-111673039-9	chr10	111672563	111673563	+	978.607422	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78790.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	6.33515717310051	6.23742905924646	6.06049150369008	6.07061933780859	6.11453755544166	5.85152792218785	-0.333398263697239	0.258646702268025	0.656202542986182
Merged-chr14-16240178-4	chr14	16239665	16240665	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359883, exon 3 of 3)	3' UTR (NM_001359883, exon 3 of 3)	3166.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	2.94736588452971	2.69703560003755	2.53869235953979	2.86514614010842	2.8038912897009	2.87666050325595	0.527053961391511	0.498075994799997	0.833856267944725
Merged-chr14-47418267-4	chr14	47417741	47418741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144553, exon 1 of 19)	5' UTR (NM_144553, exon 1 of 19)	166.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	4.52108417884491	4.58794795587919	4.60322991237948	4.3703399834388	4.94519243156661	4.26377127127372	0.027311641188102	0.954550500019109	0.989606357454991
Merged-chr19-6014777-2	chr19	6014277	6015277	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110504, intron 1 of 21)	intron (NM_001110504, intron 1 of 21)	470.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	5.23986885039257	5.35433726497052	5.48312367685396	5.00793519251162	5.04452136383278	4.68302085969871	-0.87552977165153	0.0221340749785065	0.172705561779029
Merged-chr7-5099960-3	chr7	5099475	5100475	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16936.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	4.34240358011964	4.25595485565759	4.34437235364574	4.13651942535097	4.22176867312682	4.36846356075473	-0.195924999900353	0.66657724306611	0.9082780021178
Merged-chr6-122655319-2	chr6	122654819	122655819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	28895.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	7.23893699846931	7.23572547637631	7.22599166694663	7.41203285200972	7.79570842372157	7.63728152585538	0.580348463323628	0.0151531464828181	0.133608457406202
Merged-chr11-68433172-2	chr11	68432672	68433672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	1047.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	3.67670220657504	3.78178298714637	3.59242841181392	3.6978157410601	3.36228630654835	3.6634290178922	-0.393345104217047	0.493077260755315	0.831208279358962
Merged-chr9-20976465-2	chr9	20975965	20976965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	CpG	328.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	7.07361041813718	7.32356258532045	7.13329588621407	7.3379853285736	7.47532876788515	6.83407802311797	0.109139859873722	0.695100904591039	0.919230570201314
Merged-chr14-104027266-4	chr14	104026797	104027797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045953)	promoter-TSS (NR_045953)	-155.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	4.37805694797388	3.93563573054759	3.91565907441005	3.74708928492051	3.50496749055706	3.66342456628787	-1.48282801817894	0.00811999798145387	0.0869672791917639
Merged-chr11-83704556-2	chr11	83704056	83705056	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 1 of 2)	intron (NM_001081957, intron 1 of 2)	500.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	7.82195180690618	8.11790928708747	7.93612555302702	8.06511994561282	8.41090775789972	8.03759951797841	0.315013657230074	0.184774667725474	0.568676229919411
Merged-chr5-96912323-5	chr5	96911770	96912770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9002.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	7.9905900853178	8.03580093865081	7.89193634003279	7.82418643377796	7.81353677813549	7.69239417552621	-0.279935704875476	0.190861178116849	0.577428967011753
Merged-chr2-155367823-4	chr2	155367354	155368354	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-10430.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	4.99441363727027	5.04570089166757	5.39888072741017	6.01642017785304	6.30581174760502	6.0321086114659	1.84760842704422	4.24625931975191e-08	3.34585933217724e-06
Merged-chr10-120140417-4	chr10	120139920	120140920	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27455.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	4.31846603294221	4.19166527209818	4.3479352170844	4.76519087152376	4.24769857966286	4.62351914447809	0.696097890617197	0.134769140906404	0.490674309816229
Merged-chr9-40192284-4	chr9	40191770	40192770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030713)	promoter-TSS (NM_030713)	-46.0	NR_153114	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	6.21177249432696	6.3844431701051	6.23674393793868	6.37135941056219	6.28735089921088	6.41325214288447	0.116969615717461	0.669339456723892	0.909615408611738
Merged-chr5-41550151-2	chr5	41549616	41550616	+	761.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	157575.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.59087083399269	2.40795012544026	2.41157655103213	2.88139905959701	2.62073713419507	2.99333212796019	2.06873421758541	0.0143994975035114	0.129122020341617
Merged-chr13-99191199-4	chr13	99190702	99191702	+	867.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	6379.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.80625601936316	7.10314813029521	6.75459656722706	6.84919403505215	6.78788507334585	6.54001674907656	-0.255409288711166	0.34494045845831	0.733442508046893
Merged-chr4-119000195-4	chr4	118999669	119000669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38202.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	5.49483125005092	5.85095723798687	5.603034313299	6.1412957331199	6.05485510289119	5.92969234508676	0.681364058217836	0.0312377539184649	0.213993836071956
Merged-chr2-32487355-4	chr2	32486842	32487842	+	910.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-35872.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	3.06861675691648	2.86707648883215	2.72331283210638	2.91324311780383	3.17480824105534	3.33657631938446	1.14120255150416	0.126991468526308	0.476299576882446
Merged-chr8-107294408-4	chr8	107293899	107294899	+	979.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286260, intron 1 of 12)	CpG	929.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	6.61344343983516	5.86456779428767	6.1939968727753	6.51653393290886	5.96022873349159	6.16942513033601	-0.0499646584655299	0.887652730973263	0.973836995667151
Merged-chr14-26436454-3	chr14	26435975	26436975	+	718.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	B2_Mm2|SINE|B2	78928.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	4.40365176525485	4.23960010887001	4.30445101638184	4.38639169162191	4.08156720153861	4.28243065572251	-0.181832437131227	0.694568850395983	0.919210273513843
Merged-chr2-38486116-4	chr2	38485613	38486613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25584.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.61887245521035	5.3107807331	5.53967677182958	5.40887800116451	5.16626695433064	5.90901357060991	0.0493481558682857	0.898421371713511	0.976355113798855
Merged-chr9-25251975-3	chr9	25251484	25252484	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	-7.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	8.40796865267906	8.83456346218226	8.24842143915257	8.53653751358842	8.67063394355435	8.30304169478847	-0.0168213809966976	0.947209444555789	0.988008807662239
Merged-chr5-125381396-2	chr5	125380896	125381896	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8621.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.71473670939425	3.51922739651957	3.81547960552031	3.69176245962168	3.85652911633857	3.73321969393522	0.278844539405653	0.609417055818614	0.88517286252283
Merged-chr2-77202116-3	chr2	77201627	77202627	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 10 of 17)	intron (NM_175465, intron 10 of 17)	-31492.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	2.96418323338244	2.99308680996354	2.85161643113285	2.88452047140672	2.83019698419384	2.98524812262166	-0.213795392196918	0.757241883926151	0.939819795914786
Merged-chr3-135607888-3	chr3	135607398	135608398	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 13 of 24)	MER44A|DNA|TcMar-Tigger	83649.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.45936063428133	6.43809181418045	6.63027246438867	6.94307938618927	6.90080634763367	6.7842561850195	0.593088231036094	0.0201352790559403	0.162229942021988
Merged-chr13-23739764-4	chr13	23739254	23740254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015786)	TTS (NM_015786)	947.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	8.23485000322296	8.34128202865129	8.04344676182969	8.0642934846975	8.31649343879092	8.16271038795421	-0.0406262167114097	0.854642299190075	0.965987623019113
Merged-chr5-139251394-2	chr5	139250871	139251871	+	776.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-953.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	4.12190261079166	3.97531907521793	4.29233610818404	4.3064002175902	4.19223793826137	4.31627391394937	0.393549312112985	0.403821542088346	0.779031412271333
Merged-chr13-113379082-4	chr13	113378597	113379597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123747.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.18624115385233	6.20330236930911	5.75006250562388	5.87692230307594	5.92655138893672	5.89143094941651	-0.307204900143178	0.324036155488458	0.717287790132387
Merged-chr1-120940323-2	chr1	120939823	120940823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147082.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	3.20014074643349	3.11364566101189	3.66541098472292	3.27523434080319	3.05385691731995	3.95381550654572	0.494213235465904	0.498169642499275	0.833856267944725
Merged-chr13-94301236-7	chr13	94300718	94301718	+	949.897949	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15387.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	6.54705568081956	6.70428344735338	6.34077609446778	6.1097743980657	6.08136344402085	5.6720293731242	-0.936508536250221	0.0024370179143551	0.0359793091940488
Merged-chr18-80224496-4	chr18	80224000	80225000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	17633.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	6.31902206091928	6.74805792978669	6.45484128522273	5.43039313931219	5.2012442645895	5.72779501047013	-1.88494302640293	1.37711249839523e-08	1.20617659754179e-06
Merged-chr6-28622682-4	chr6	28622194	28623194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142346.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	6.13066266670692	5.86471697033459	5.84671180038292	6.22151488135775	6.36549670139791	5.95961517865435	0.418432663305292	0.17506958431977	0.554789005606688
Merged-chr9-70842719-8	chr9	70842219	70843219	+	950.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	MIR3|SINE|MIR	92089.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.7202185986044	6.60044384696002	6.80358236307025	6.55315622435224	6.75257404295494	6.78819004415916	-0.00736985786046049	0.977362076326412	0.994771164142869
Merged-chr7-19002184-2	chr7	19001684	19002684	+	991.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145579)	TTS (NM_145579)	-1881.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.65047893584635	5.64745928612437	5.90830873532889	5.89240307072595	5.7922280210119	6.09764929288875	0.347848838524456	0.269838026750662	0.666905044122659
Merged-chr1-16686072-1	chr1	16685572	16686572	+	703.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-2384.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	2.39518251582116	2.32548333020934	2.60094017623891	2.51099448901021	2.25534943494458	2.35711581475307	-0.401996358627138	0.632679658023138	1
Merged-chr5-135011606-2	chr5	135011106	135012106	+	759.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_026688)	TTS (NR_026688)	1551.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	4.3262803333996	4.44422263531233	4.85320661106061	5.24133184153515	5.39399019543783	5.0964253802972	1.5903770270719	0.000123540305029148	0.00339146872347916
Merged-chr5-72263165-4	chr5	72262676	72263676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59833.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	7.21730690964086	7.37645795616189	6.64871103894881	7.39312939605523	7.63901724416732	6.86369390051957	0.327953612114509	0.316208439517825	0.710322935001732
Merged-chr8-35375605-4	chr8	35375139	35376139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177741)	promoter-TSS (NM_177741)	-102.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.27859788695221	6.51146761311875	6.20054678437048	5.71812984518002	5.64095420273394	5.42977179585063	-1.27771580132986	4.24593043907735e-05	0.00137898274775468
Merged-chr8-46869535-4	chr8	46869028	46870028	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117359.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.52452070121554	6.51563667841022	6.78819037945616	5.94766093541504	6.16063711914872	6.34379839863062	-0.744895118096836	0.0100424799290419	0.100685252919027
Merged-chr5-4192083-2	chr5	4191583	4192583	+	697.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042670)	promoter-TSS (NM_001042670)	-284.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	2.8390720376753	2.9258560761327	2.86130756936621	3.0825838340136	3.06429622444972	3.27793440667442	1.24850397845361	0.0689971237562312	0.34365573288091
Merged-chr7-125542766-4	chr7	125542268	125543268	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9514.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	4.00593408602477	3.80839846942674	3.87598992368097	4.17718432904101	4.48592858570551	4.19682657544961	1.15424206326301	0.0201364152629927	0.162229942021988
Merged-chr18-56754906-3	chr18	56754427	56755427	+	964.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47114.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.66375430452661	3.31570534874928	3.43242930059681	3.12747002708224	3.29165831681919	3.27707553527346	-0.966916397503634	0.125390927305837	0.473876111606682
Merged-chr4-86899398-1	chr4	86898898	86899898	+	794.333313	f0_balb.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24984.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.78013508956168	3.54832907492935	3.7519279304309	3.45983629074356	3.10360343884565	3.39756506566924	-1.41169799864393	0.0232165370576037	0.178255782842501
Merged-chr8-117257368-5	chr8	117256900	117257900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163262, exon 1 of 21)	exon (NM_001163262, exon 1 of 21)	381.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.20916974512028	8.58728444476389	8.40556852205239	8.32402252343967	8.5242160112863	8.51579557415115	0.0650571839010082	0.77053691136189	0.943392092118189
Merged-chr5-122398562-2	chr5	122398062	122399062	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	B3|SINE|B2	6684.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	5.40323602350476	5.37168475517648	5.29764746661215	5.27915831096332	5.22024725980775	5.29791668406389	-0.197344380347391	0.560885052805093	0.865331098437164
Merged-chr7-101618996-1	chr7	101618496	101619496	+	643.0	f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-37835.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	6.14624039235832	6.17932669046347	6.20623678550016	6.85578432763156	7.14388046381092	6.15366021263551	0.994052785796825	0.0031645719247894	0.0438862834529793
Merged-chr9-119977914-4	chr9	119977417	119978417	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	5106.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	4.66020875154086	4.47146564245798	4.89912104684397	4.92605489177375	4.59907804759606	4.82102906295547	0.246368116983805	0.561436875793425	0.865407801976397
Merged-chr1-55053901-1	chr1	55053401	55054401	+	649.5	f1_balb.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	1131.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	5.55498706151546	5.40218170144019	4.99110293987525	5.76131005026264	5.83964740432653	5.32139128081708	0.60448931105848	0.113955422951818	0.450859089500984
Merged-chr11-60045790-2	chr11	60045290	60046290	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290012, intron 1 of 6)	intron (NM_001290012, intron 1 of 6)	699.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	4.71952695271803	4.89266259850519	5.13160136263062	4.64125375264483	4.81724525785838	4.62114109294157	-0.481164534897024	0.242793639252291	0.639963670010918
Merged-chr1-144303640-2	chr1	144303140	144304140	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-54536.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	2.07344533354026	2.43199275427157	2.26314782439403	2.38441224353421	2.17374619896378	2.53170494126244	0.664247981115762	0.4705260254499	1
Merged-chr11-102408649-4	chr11	102408149	102409149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	8.37105687728166	8.68309465125589	8.30463689983857	8.2365464400488	8.90478364695251	8.15372374262418	0.0294311873716163	0.917297723040179	0.981588017376699
Merged-chr11-51854988-2	chr11	51854488	51855488	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	intron (NM_001357588, intron 1 of 12)	2493.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.86130413475511	3.76573829616699	3.89467563615605	3.83867557682787	3.70231477752438	3.91490773472766	-0.0772125342511829	0.881945626129485	0.972991471105994
Merged-chr1-63180789-2	chr1	63180289	63181289	+	595.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018796)	TTS (NM_018796)	1766.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	3.13710587568335	2.99957302232126	3.09260677317857	2.80187723275175	2.885713770343	3.04902238309048	-0.780826999717793	0.256441087372568	0.653552886970565
Merged-chr7-43446405-4	chr7	43445899	43446899	+	908.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	2327.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	3.99553500481384	3.6593086060411	3.67774315353292	3.88299162986018	4.13947883526392	4.00977731987761	0.694077816706272	0.195360990244856	0.583020169139918
Merged-chr15-66680156-4	chr15	66679636	66680636	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 8 of 47)	intron (NM_009375, intron 8 of 47)	9366.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	3.53009627904836	3.46745014981587	3.62207330267676	3.35271094701743	3.62099443509787	3.58795687853837	-0.0344084234987174	0.952510719853845	0.989124260059756
Merged-chr7-24462431-4	chr7	24461946	24462946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-37.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	5.91545342299929	6.03542454449987	6.56933577214708	5.86394810076165	5.5361821132049	5.96964406411944	-0.697888284873933	0.0461839146568465	0.271849969635461
Merged-chr6-114918776-2	chr6	114918276	114919276	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	3045.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.18458330627495	4.369371488458	4.38950267632507	4.39767434063776	4.11530609674259	4.61472541277105	0.169768596329904	0.719601590958706	0.927917795122043
Merged-chr2-109280712-4	chr2	109280224	109281224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-14.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	7.51195541289731	7.93709531703888	7.46900229988627	7.3762459155932	7.88986686008906	7.65308981504984	-0.00338006031022716	0.990125413752778	0.997715475961746
Merged-chr14-54686207-2	chr14	54685703	54686703	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	32.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	7.82780796209616	8.11325011803851	7.7574149890975	7.93183764504795	8.01944661916941	7.83098159862729	0.0267204333971344	0.907757941647285	0.979037236663477
Merged-chr4-86670036-4	chr4	86669537	86670537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	22.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.84972615172423	8.03654853149719	7.8401328240242	7.82994577026801	8.13703558017585	7.76864832947263	0.0217226311045289	0.92612363724111	0.98330839499749
Merged-chr11-115061722-4	chr11	115061239	115062239	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	300.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	4.86073630583201	4.66911426233662	4.92437167297992	5.44015708777904	5.28313013956041	5.29472726866976	1.11115861444135	0.00262104823221585	0.0380083968815296
Merged-chr19-11517571-4	chr19	11517066	11518066	+	912.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	-993.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	4.62045862949295	5.01537006544476	5.13300785969964	4.98651809160368	5.050844454673	4.96034066786702	0.149282151292167	0.708846018045343	0.923778223606281
Merged-chr17-86447318-4	chr17	86446808	86447808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-160130.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	4.74053114742454	4.66868571736417	4.41614255107764	4.34305379790743	4.28744132671437	4.25057931128841	-0.835093977585683	0.0588716994220794	0.314072986184034
Merged-chr3-122619095-3	chr3	122618590	122619590	+	955.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114665, intron 1 of 15)	CpG	624.0	NM_153118	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	4.32613501441424	3.98895344602572	4.35228194732805	4.58984900503792	4.24767764169542	4.62183720030263	0.684244097579744	0.152008966571924	0.519866916996164
Merged-chr8-67997080-3	chr8	67996600	67997600	+	870.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-22526.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.19598175516709	3.1750057725212	3.6018167329953	3.31531921750317	3.21458687433296	3.36307536162628	-0.135591428160373	0.83126101574049	0.960444904168444
Merged-chr7-13054775-4	chr7	13054260	13055260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290453)	promoter-TSS (NM_001290453)	4.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	4.14323996232927	4.04265058954257	4.2550180078954	4.23349024263402	4.37647018038722	4.60614367718833	0.710870638281372	0.127704444911223	0.477767701639902
Merged-chr2-130178927-3	chr2	130178321	130179321	+	898.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009225, intron 1 of 6)	CpG	543.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	7.60980203528385	7.90929510329967	7.60465375907007	7.56005775107836	7.51967723358548	7.27944479837093	-0.37459208374588	0.12224895078931	0.467725340135961
Merged-chr11-60936839-2	chr11	60936339	60937339	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	4782.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	4.28532263129283	4.23958762808812	4.36822638479024	4.08366793033639	4.13627795672445	4.39301732525401	-0.252709915311268	0.58664978310181	0.875615538765309
Merged-chr10-7470250-4	chr10	7469757	7470757	+	914.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	IAPEY4_LTR|LTR|ERVK	3220.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	5.29480325956894	5.24447521659617	5.01446689601203	5.36116661812132	5.16291033603208	4.92624262726806	-0.0586354971407541	0.876064080075733	0.971176540787135
Merged-chr11-76735667-2	chr11	76735212	76736212	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27866.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	4.85881874164149	4.88423952310239	5.12642737258119	4.85535647036484	4.85273696965668	4.80648257997844	-0.249052431699547	0.518725791013316	0.84542522050122
Merged-chr1-95366426-4	chr1	95365929	95366929	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	52801.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	5.23406582887336	5.32550372949758	4.97884472443417	5.19945469044849	5.28015207329934	5.41052830216222	0.19328949648482	0.592351055756216	0.878003422897225
Merged-chr3-27438388-2	chr3	27437888	27438888	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	67037.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	2.69427719715502	2.84401923716102	2.8421056508324	2.65637626630855	2.51596770938142	2.60454124810643	-1.14146026740255	0.134882334980254	1
Merged-chr10-68136670-4	chr10	68136164	68137164	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142062.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.56880450692062	7.74830545015816	7.22685894043153	7.52683227153286	7.75071558003397	7.36809239477924	0.0347510401054183	0.894852743440444	0.975618128213251
Merged-chr5-140740003-4	chr5	140739514	140740514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	15887.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.09773923993173	6.1310680652845	6.0906494222149	5.67267072723321	5.88901938149544	5.50473019060001	-0.691330009120173	0.0272190706147739	0.196501595036513
Merged-chr13-5716961-4	chr13	5716471	5717471	+	980.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	141121.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.50581850687062	4.45448456040035	4.34821104771029	4.84598547143164	4.63238441140459	4.55214836005574	0.590797934384505	0.16599666447913	0.541109862183596
Merged-chr16-18235077-6	chr16	18234504	18235504	+	881.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172151, exon 1 of 11)	exon (NM_172151, exon 1 of 11)	132.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	4.60916806661834	4.51416041364812	4.8485164582614	4.42458557108465	4.16087187385339	4.66264416028473	-0.590646330690916	0.19603547569841	0.58384154409296
Merged-chr10-115316025-3	chr10	115315545	115316545	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-454.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	7.64708497565223	7.80703038467391	7.75653230237998	7.74855945624238	7.86826279258028	7.83796556248077	0.117285058715288	0.588380123410476	0.87639284157204
Merged-chr3-55652540-4	chr3	55652042	55653042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-129968.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	4.90109706827049	4.97188593574767	5.16190522824641	5.12376064736196	4.96046963133027	4.95305747018202	0.0159761217199228	0.966044901888647	0.992207077743977
Merged-chr11-77795309-3	chr11	77794791	77795791	+	704.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-6007.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	3.47154320891746	3.14470264755165	3.33961845465037	3.29513966530646	2.77352152707936	3.35640661430227	-0.638402743339755	0.386610377103982	0.767131316757601
Merged-chr8-77485204-6	chr8	77484692	77485692	+	806.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-31864.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.46573156024362	3.32685501949673	3.30482489546216	3.38403524250504	3.3937560083137	3.54114103267329	0.256307651946445	0.66602036531763	0.907960570164785
Merged-chr18-67606676-2	chr18	67606176	67607176	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34679.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	4.33804322534864	4.41661046325624	4.29751859971963	4.44779989379437	4.30621849012279	4.22551927666769	-0.059043150471456	0.895097409644718	0.975651251823701
Merged-chr2-4561147-2	chr2	4560647	4561647	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	1393.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.0235413282899	6.1598383772386	6.24728203931658	6.59324402253401	6.88016795176208	6.44488639576784	0.851911920006751	0.00298373629368948	0.041951796134727
Merged-chr5-117872728-4	chr5	117872212	117873212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5873.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.90982503395781	6.80502015378283	6.90654539804453	6.60487783847983	6.41865524778221	6.88182878827347	-0.370922537430003	0.170193394494965	0.547518417123576
Merged-chr2-23015039-3	chr2	23014545	23015545	+	870.6555179999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RMER17B|LTR|ERVK	25196.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	6.45693404582073	6.1363122743712	6.40193597085095	7.19889554108384	7.16026331584773	6.64554741357025	1.09827295122805	0.000173308278012662	0.00445907087101965
Merged-chr16-31940958-2	chr16	31940498	31941498	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	7147.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	2.38561364408743	2.53546879826761	2.57171175505069	2.66249529190089	2.48724306018721	2.8857690830502	1.05173194601409	0.190801811199947	1
Merged-chr5-64813651-4	chr5	64813141	64814141	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	10118.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.39455797490165	5.0193034611191	5.34828358715182	5.2270325269442	5.35498718503683	5.41121751568126	0.142475041833216	0.692197635339459	0.918590542007936
Merged-chr11-17185311-4	chr11	17184802	17185802	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	L1_Mur3|LINE|L1	26004.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	5.29465657168948	5.2035748665334	5.41560348735583	4.63062180761172	4.67674977047052	4.83046069929528	-1.28886932105858	0.000693872154092943	0.0135880711220912
Merged-chr18-67775303-4	chr18	67774801	67775801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045376)	TTS (NR_045376)	425.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	7.75823461951055	7.74797017853106	7.92189606082813	8.01236674594366	7.77575735531177	7.60093652233438	0.00496844345954529	0.983111807449998	0.996221195124187
Merged-chr3-38237813-3	chr3	38237328	38238328	+	913.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29709.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	2.02108464864522	2.03550780019114	2.18470242873106	2.19454095526109	2.09850977044778	2.32408847552607	0.93364873852496	0.299750456250099	1
Merged-chr7-16308672-4	chr7	16308178	16309178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-905.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	6.94849433801955	6.66716828490533	6.50374041335589	7.14967657878422	7.42267227867592	6.80854978395384	0.664480388111841	0.0240066226852415	0.182174469712136
Merged-chr1-54921768-1	chr1	54921268	54922268	+	813.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	4619.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.85649510459209	4.86315766490416	4.92391679429131	4.84226722938894	4.72483494650526	4.76528532009062	-0.231757351127409	0.547991764528964	0.859456555901125
Merged-chr11-118479755-5	chr11	118479274	118480274	+	986.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 3 of 13)	B1_Mus2|SINE|Alu	2942.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.20636239872151	5.43720809699381	5.42815570090035	5.40834693042379	5.38335365755515	5.13705249772826	-0.0692078794052797	0.843740754635204	0.963626615675937
Merged-chr4-138426884-4	chr4	138426387	138427387	+	938.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7785.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	2.84447407235273	2.70466437605331	2.58003886192201	3.20559967748384	2.79600746286062	2.92364453405853	1.33285271313477	0.0873785891253129	0.391935234399915
Merged-chr9-66131568-6	chr9	66131052	66132052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4941.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	5.20831206507142	5.12974759876255	5.77713191370458	5.17651097643115	5.16627258398316	5.7929031442974	0.0164820105669538	0.968586404708456	0.992811398801848
Merged-chr19-41830388-4	chr19	41829940	41830940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	470.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	5.75645960799593	5.23864676769323	5.6652955810197	6.53378023711657	5.87469149664435	6.45379978217398	1.29807770199398	0.000374119556799853	0.00835025216797269
Merged-chr1-88699869-2	chr1	88699369	88700369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2322.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	7.43792822106641	7.43735520907593	7.22905058114646	7.49446772840798	7.82564860902274	7.380270730918	0.312923657113587	0.212586776206078	0.60512503641463
Merged-chr2-156841422-2	chr2	156840922	156841922	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	intron (NM_001291124, intron 1 of 3)	1415.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	3.71242945423718	3.42102772649573	3.4970428360626	3.88090011790072	3.5554253066532	3.39189401484577	0.268275474271211	0.656623486775522	0.904693205515276
Merged-chr2-164085895-4	chr2	164085396	164086396	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	11718.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	5.12866996111994	5.32404238523554	5.17264498937982	4.88405308191918	5.24454355733459	5.10190419517562	-0.251154019720794	0.500099241041292	0.834921806675451
Merged-chr4-43453552-3	chr4	43453082	43454082	+	871.507935	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110321, intron 2 of 7)	intron (NM_001110321, intron 2 of 7)	1044.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	5.34228429841587	5.83673027361487	5.76217799796268	5.36555267376914	5.56399085763881	5.31532261294629	-0.443955666682334	0.213450993024877	0.606412300531439
Merged-chr8-70609620-4	chr8	70609136	70610136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1322.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	8.17632974052183	8.11949621547623	7.8176762960824	7.89370550843091	8.10942471749184	7.54138958202698	-0.245982345719964	0.339747971297954	0.729397455488285
Merged-chr1-194999614-3	chr1	194999115	195000115	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17784.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	4.27710729155932	4.11422499093568	4.11619695430692	4.17806707782518	4.07119594707369	4.08852703877611	-0.17357655023442	0.713607772063973	0.92557476402444
Merged-chr7-83633951-2	chr7	83633451	83634451	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023377, intron 3 of 5)	intron (NM_023377, intron 3 of 5)	1934.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	3.50044044865841	3.57745954479706	3.3138984948276	3.48632150976797	3.60760339132432	3.44503657718424	0.162605353245584	0.782903047160778	0.946816225283113
Merged-chr10-43220665-2	chr10	43220165	43221165	+	734.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-821.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	5.82662867251008	6.34025492849451	6.30355696884652	6.01405050154476	6.08219625519517	6.12276462347207	-0.17375143510636	0.579145127596932	0.872437416842052
Merged-chr1-155099650-4	chr1	155099159	155100159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010500)	promoter-TSS (NM_010500)	-23.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	7.47750660698951	7.15273374010069	7.13066530068376	7.05887722054421	7.17544633636668	7.13785359138326	-0.214109962711763	0.390041226368375	0.769429833183019
Merged-chr10-60287946-2	chr10	60287446	60288446	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	3485.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.95158310822905	6.03532363505828	5.9128657629046	6.31756922174072	6.12075334442359	5.92493963343595	0.285750832860249	0.339218676468759	0.729122178214163
Merged-chr10-96625320-1	chr10	96624820	96625820	+	558.0	f0_balb.idr	Intergenic	Intergenic	8319.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	2.27120127975786	2.33340185301386	2.50386112452016	2.3280756207349	2.17216437082806	2.1927916522082	-0.94897855942985	0.276432235213698	1
Merged-chr7-12979232-2	chr7	12978732	12979732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168561, exon 2 of 5)	exon (NM_001168561, exon 2 of 5)	1384.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	5.79375912875952	5.9311789258883	6.10065331132163	7.14066137388257	7.32093344185018	7.28137521632578	2.09949854240952	3.38014819211175e-15	9.56650920983791e-13
Merged-chr1-128750040-3	chr1	128749560	128750560	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-157761.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.3837119089157	3.49102413118238	3.91341811906359	3.23594278369799	2.92893116821072	2.97136465798094	-2.35283978429252	0.00118551907792982	0.0205766940835178
Merged-chr6-82048150-3	chr6	82047651	82048651	+	919.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	6523.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	4.73915748905483	4.63759387074794	4.01952529295439	3.35118722457437	3.18844224640972	3.64083942624347	-4.26410317570427	1.04868624010124e-08	9.46410896598093e-07
Merged-chr3-89729934-3	chr3	89729474	89730474	+	926.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-744.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	5.0577282148399	5.19738743525925	5.33987235492433	5.29504278859104	5.23203544462988	5.21602778515302	0.10839996098288	0.758921104584942	0.940311236380535
Merged-chr12-108334168-4	chr12	108333666	108334666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-150.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	3.95961494503033	4.26260130723658	4.04383638613742	3.74435205849223	3.79328615095592	3.64233971389488	-1.13445625349014	0.0325578850414434	0.219494953956558
Merged-chr14-49140896-4	chr14	49140414	49141414	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-31332.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	2.82532738144689	3.14259184092682	2.99892988322809	2.86166862236168	2.73779653546896	3.12816076266922	-0.394134805470855	0.587019075899536	0.875769926947203
Merged-chr19-5804895-3	chr19	5804454	5805454	+	925.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-2282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	6.39571483084206	6.39928544685195	6.61930978469059	6.68435199760209	6.68822522884905	6.70996506315618	0.361735799228156	0.164797117300165	0.539485785555037
Merged-chr6-7844614-4	chr6	7844094	7845094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-630.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	6.18810048941482	6.14677739915241	5.88734385219145	5.92350226119827	5.68039174206903	5.7957441070241	-0.507954172097327	0.0971974800256997	0.415687084600042
Merged-chr17-29054056-4	chr17	29053550	29054550	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21390.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	4.28200663965028	4.46972386185232	4.21124210891826	4.22397226689638	3.84884326989552	4.23368923091823	-0.624071117559176	0.204692305547958	0.595338437555822
Merged-chr8-70759714-2	chr8	70759214	70760214	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183170, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	1207.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	4.07893939506911	3.89038327147088	4.28530525113196	3.8506939606117	3.71286690669793	3.90320571870185	-0.821142506685473	0.114840993502135	0.452465739350451
Merged-chr15-101248141-4	chr15	101247634	101248634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18712.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.55383562353124	5.52118363378222	5.38952334563588	5.84906534905159	5.85266231939876	5.84380990842922	0.646656378896993	0.0387914875224174	0.244240855862987
Merged-chr9-85413993-4	chr9	85413464	85414464	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86814.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.18895158338801	3.27175511347169	3.30247978239366	3.27300617255274	3.17702300978654	3.31787316592761	-0.00115841115240103	0.998499181676612	0.99968860062024
Merged-chr15-101284161-4	chr15	101283607	101284607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-194.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	7.88162082808366	7.79771060548237	7.61880313406635	7.99785838690622	7.95464579720545	7.51324815576497	0.104723331061865	0.672983445525115	0.911093139423607
Merged-chr3-109027771-4	chr3	109027229	109028229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163567)	promoter-TSS (NM_001163567)	-122.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	6.19856946611745	5.48454879888197	6.03031985443922	6.22521838993375	5.66488395696878	5.80516336777072	-0.0307441649199106	0.934268088772452	0.985707838096286
Merged-chr16-23332926-4	chr16	23332418	23333418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	42448.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.02682827074796	5.87181591527752	6.20829173730693	5.55506665980702	5.92160288919138	6.06580792517513	-0.305075594440708	0.349445543640242	0.737499871486835
Merged-chr4-141761785-4	chr4	141761290	141762290	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172338)	TTS (NM_172338)	15115.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	4.92988461226564	4.64720365123626	4.7202209415422	3.63225232051685	4.01008473730823	3.98861830801218	-2.43105094090397	4.68771954217042e-06	0.000209482152344209
Merged-chr6-122571004-4	chr6	122570512	122571512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17203.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	7.9929541182476	7.72103505500132	7.65688032627938	7.72573240453478	8.11819673251611	7.73180152668663	0.109880895680492	0.659811495111845	0.905624311712053
Merged-chr11-61517092-2	chr11	61516592	61517592	+	704.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010148)	TTS (NM_010148)	11948.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	3.00162901311024	2.79498463273901	2.92216500621156	2.90644706732401	3.12774538792048	3.28012827706862	0.927332560181898	0.184567360892149	0.56829044423897
Merged-chr4-142045429-4	chr4	142044858	142045858	+	848.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	27460.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	4.16169344243017	4.08097527912553	4.17194461608266	4.53302114845991	3.9847986429882	3.99330744998051	0.172033316728738	0.735922582688172	0.932985636193948
Merged-chr16-30512154-4	chr16	30511657	30512657	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	38421.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	5.18260745496603	4.98511801662632	4.74709346320644	4.08937065352637	4.25956388237846	4.65566779459184	-1.55386757775039	0.000737283676699709	0.0142338515477562
Merged-chr14-9411971-4	chr14	9411477	9412477	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-472118.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.35415724356009	4.77203422321737	4.34173818988368	4.19251375247427	4.55864742748079	4.61957055206998	-0.114748497309769	0.809331271611531	0.954721853010197
Merged-chr12-12291804-2	chr12	12291304	12292304	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	29665.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.71137277163661	4.87868857252039	5.01052124561375	5.22471388290355	4.85223406631278	5.17353888123528	0.477117859048106	0.226186373873899	0.621140322788657
Merged-chr2-173218558-4	chr2	173218058	173219058	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139519, intron 1 of 3)	intron (NM_001139519, intron 1 of 3)	364.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	6.31255820253467	6.56644447877791	6.29834488301209	7.2039431940527	7.44037693056096	6.81562446528997	1.21857981744377	2.81109732864129e-05	0.000975827227874777
Merged-chr5-32007018-4	chr5	32006517	32007517	+	872.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 9 of 11)	MIRb|SINE|MIR	-129455.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.29766093031422	3.40333926872741	3.18045374045584	3.18394427381527	3.09896248995257	3.30981589366929	-0.449205569785046	0.47751164964106	0.823237639056184
Merged-chr16-92435017-3	chr16	92434540	92435540	+	735.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	31129.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.42059909159589	4.33317633479361	4.71077410665528	4.2248384279808	4.4175442950528	4.7750571931085	-0.014243147124726	0.975729184979902	0.994540154302743
Merged-chr10-7040328-4	chr10	7039824	7040824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17139.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	6.77029247045371	6.39820108327311	6.61896533184043	6.22798759726764	6.45291792802138	6.54468901923363	-0.308882832435126	0.276844974283571	0.674189786355285
Merged-chr5-138731123-4	chr5	138730656	138731656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	3.82628144014703	3.87236303316598	4.31649107529282	3.88047009326077	3.76017658101531	3.68815312131479	-0.722497114716611	0.186343484268785	0.570809808295781
Merged-chr14-73227319-3	chr14	73226815	73227815	+	803.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-10576.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	3.49497914275269	3.38000884395328	3.57130154351914	3.67850310597912	3.68888648868623	3.79482856699624	0.846483196319314	0.129440764253019	0.481228589205873
Merged-chr9-85329857-2	chr9	85329357	85330357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2707.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.78998482715546	3.59540240082279	4.15942871745989	3.57256268222068	3.7121704873987	3.49996223687239	-0.849247507277455	0.148696250211276	0.514500897687118
Merged-chr17-33955721-4	chr17	33955204	33956204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	-63.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	8.46665595344886	8.66602722974078	8.13224655192468	8.26345255519554	8.59336114778524	8.35773832080118	-0.0430680908941671	0.860058583350843	0.967441103100897
Merged-chr8-83609852-2	chr8	83609352	83610352	+	619.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018808, exon 2 of 3)	exon (NM_018808, exon 2 of 3)	1304.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	3.82688676777625	3.70758790297989	3.78055540261501	3.40938039624429	3.39837829636626	3.53770755499409	-1.17551255063527	0.0375664989929063	0.239582528412796
Merged-chr7-80089596-2	chr7	80089096	80090096	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146000, intron 5 of 5)	intron (NM_001146000, intron 5 of 5)	-14339.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	2.66250533898703	2.62327106902045	3.1049364507074	2.63171353816088	2.57699719852114	3.17584768928335	0.0422381680692312	0.958963601259523	0.990174309444982
Merged-chr17-36205834-7	chr17	36205447	36206447	+	912.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15796.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	4.63107903832963	4.28789874463164	4.10746128333246	4.19782114009959	4.37093450582648	4.02082880285434	-0.411184902992956	0.412199759108746	0.784340123865907
Merged-chr5-18010488-4	chr5	18009950	18010950	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	47880.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	5.32608286465587	5.229961167244	5.26527195785282	5.74000849414981	5.68139894735	5.73390021775103	0.843488612592664	0.00937322692901118	0.0961869304018231
Merged-chr5-138161050-4	chr5	138160548	138161548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012002)	promoter-TSS (NM_012002)	-54.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	4.4301795042409	4.22206471459358	4.44219828688521	4.44686975077525	4.5452804322158	4.46676760088312	0.321794108845844	0.461803714523634	0.815107818354545
Merged-chr5-108246522-4	chr5	108245988	108246988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22409.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	5.34621864031722	4.98823530904234	4.93591184366597	4.51112546845972	4.73484708946917	4.92863664643796	-0.836912194796973	0.0425820202223579	0.258787886485878
Merged-chr17-56996157-2	chr17	56995657	56996657	+	648.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017393, exon 6 of 6)	3' UTR (NM_017393, exon 6 of 6)	-1182.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	2.90882161204931	2.86223785546089	2.97864276722365	2.97596036466197	2.83398567090722	2.99195291019755	0.0828482959138633	0.903758703245221	0.977858102400597
Merged-chr1-58710769-2	chr1	58710269	58711269	+	891.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289704)	promoter-TSS (NM_001289704)	-722.0	NR_149257	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.63362516619361	6.71990408115049	6.49714152040174	6.82376645763702	6.74781133875396	6.55671133442923	0.147461097959597	0.574896743344799	0.870949097302346
Merged-chr19-3945983-2	chr19	3945483	3946483	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 9 of 10)	intron (NM_019449, intron 9 of 10)	10797.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	3.3406058243926	3.25619189443333	3.54261397227795	3.4778665215593	3.31845310189456	3.61217871706466	0.340710734090636	0.572202141098569	0.869807909725036
Merged-chr13-51908761-4	chr13	51908268	51909268	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62093.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.17846889377631	4.28764611909551	3.90117842063542	4.1767109855783	3.99639728500866	3.7476461649734	-0.429179033851132	0.415976764810129	0.786885495180028
Merged-chr9-95563424-4	chr9	95562930	95563930	+	860.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3613.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.97200343033835	7.00744933973665	7.12544335192182	7.1701844370685	7.37361333861744	6.98523347972189	0.246942673840123	0.325486539762471	0.718159390122652
Merged-chr11-50369632-4	chr11	50369152	50370152	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8067.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	3.28522595452855	2.91410865663593	3.37444201008518	3.18047290238969	2.80156140321431	2.92657099678315	-0.993307499030139	0.173007014112216	0.551737045491665
Merged-chr9-32514274-2	chr9	32513774	32514774	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	27178.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.76551373173074	5.13620102472516	5.56189072164695	4.60757904662877	5.0669182875308	4.67388424326303	-0.806815739987371	0.0781196331093383	0.369076676797741
Merged-chr2-79713802-4	chr2	79713308	79714308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	6028.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	3.82259094589475	3.7698000931603	3.84860099303861	3.8175179891755	3.53234626488906	3.42495720511366	-0.696219953686395	0.218951402689298	0.613128894826908
Merged-chr6-37231333-4	chr6	37230829	37231829	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	68647.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.64292056011066	3.7365364048525	3.89991519832233	3.48756673638534	3.70508218199959	3.45389059907723	-0.679806147459327	0.236524387497027	0.632745673713476
Merged-chr3-100932384-4	chr3	100931867	100932867	+	900.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165953, exon 7 of 7)	3' UTR (NM_001165953, exon 7 of 7)	9874.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	2.19819304851517	2.06039231418344	2.26400006145702	1.93672938495218	1.92656076013507	2.14503184790054	-1.37937241113436	0.151570664637804	1
Merged-chr1-91055138-4	chr1	91054667	91055667	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	1723.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.88854135542971	5.77479795187352	5.52629865856056	6.14484247779625	6.17871823551722	6.12936539731285	0.700177452523865	0.0218165099762318	0.171126335039809
Merged-chr5-27791024-1	chr5	27790524	27791524	+	880.0	f0_balb.idr	intron (NM_018878, intron 1 of 20)	CpG	526.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	6.34162858545503	5.99561480076599	6.04800451023432	6.52191196659075	5.96327298466581	6.2391671911379	0.196687023962958	0.540273310227059	0.85632302227606
Merged-chr10-60346033-2	chr10	60345533	60346533	+	655.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-818.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	2.96053103546353	2.62120540128353	2.8190831131872	2.68965651591252	2.60548940236078	2.70635313182427	-0.762075829496672	0.314110291012606	0.708517148596518
Merged-chr1-36462024-1	chr1	36461524	36462524	+	576.0	f0_balb.idr	Intergenic	Intergenic	-9573.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	2.73279470659759	2.6925551398345	2.73789915184735	2.86108363353141	2.79980703861471	2.8724002782728	0.641223541274138	0.369063290200046	0.753820217432397
Merged-chr2-115581658-4	chr2	115581150	115582150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145898)	promoter-TSS (NM_001145898)	-66.0	NM_207264	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	6.16181634180574	6.55591849280101	5.91443050715822	6.25708592592433	6.329676147227	6.05114516999232	-0.0453522363062476	0.887946125151204	0.973954932528096
Merged-chr18-15195990-2	chr18	15195490	15196490	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44544.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	4.32295647423747	4.47321672189907	4.99913009371718	4.73773624355313	4.88047503530287	5.27111560466541	0.806276432568994	0.0818369349353737	0.378515157426491
Merged-chr16-76365240-2	chr16	76364740	76365740	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	7809.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.79026303928109	5.78371756041859	5.69352789974043	6.00044110003784	6.32114983811464	5.88842198132055	0.59005903757887	0.0595658548138813	0.315872515923359
Merged-chr19-44394135-4	chr19	44393634	44394634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009127)	TTS (NM_009127)	13575.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	6.16424802050074	6.18717438841653	5.71677983945114	6.17804825385506	6.17993183967234	5.69272010974535	-0.00615548157219014	0.985392032837493	0.996904015210561
Merged-chr1-180829987-4	chr1	180829479	180830479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16374.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	5.98294506786403	5.6654894952729	5.84629315526241	5.72994214729213	5.6580491320735	5.61990523292546	-0.301002936650261	0.341180212656682	0.730686899066382
Merged-chr12-59066868-4	chr12	59066367	59067367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008891)	promoter-TSS (NM_008891)	-52.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	6.92118990086691	7.23267110276023	7.19467376166974	7.19763382003578	7.10623808132815	7.34207107495007	0.137594656633814	0.581715756551304	0.873425292899358
Merged-chr6-29248053-3	chr6	29247567	29248567	+	944.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-24421.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	4.37466392402573	4.15386765583564	4.3360093432392	4.23976774782762	3.70673615757474	4.03660785593306	-0.799501745157738	0.122246548068342	0.467725340135961
Merged-chr3-15284147-4	chr3	15283653	15284653	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48149.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	7.44149245433218	7.77178944558492	7.04680006845914	6.97425719007342	7.26821338909426	6.96233319915967	-0.566550362899609	0.0501943656853217	0.285159854855906
Merged-chr1-95644278-4	chr1	95643783	95644783	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	MIR3|SINE|MIR	23311.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.46542739584782	3.1433689863783	3.33770331820659	3.38325946329281	3.23307123876322	3.23676940281891	-0.145072130496232	0.817319361172491	0.956767881392089
Merged-chr6-136858444-1	chr6	136857944	136858944	+	580.5	f0_balb.idr	promoter-TSS (NM_026639)	promoter-TSS (NM_026639)	-844.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	2.96749489691961	3.05226546287213	2.85152162932894	2.51127508073132	2.4395755953178	2.80229034127281	-2.22024232522005	0.00868425022873094	0.0913179695478636
Merged-chr4-155667193-3	chr4	155666698	155667698	+	796.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145124, intron 1 of 18)	intron (NM_145124, intron 1 of 18)	2056.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	4.23340143401869	4.12854725774031	4.45290656363426	4.93532069723685	5.3527949550392	5.30599374548236	2.23776286858714	2.17970542589802e-07	1.41033381864792e-05
Merged-chr2-3419133-4	chr2	3418625	3419625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355210)	promoter-TSS (NM_001355210)	4.0	NM_001355207	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	6.53647725753662	6.44637311114247	5.6736162863607	5.99950765631521	6.21784814491388	5.82503455064029	-0.425994556849742	0.239750987418588	0.636744339646532
Merged-chr10-8769499-4	chr10	8769001	8770001	+	838.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	116569.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.24616954594343	5.79984928747499	5.93234375484371	5.66411866683299	5.48675499979881	5.87569611392845	-0.612281957519892	0.0670988974105936	0.338599372656964
Merged-chr11-54437478-4	chr11	54436989	54437989	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-690.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	7.62972109636534	7.76886164017649	7.32048983076619	7.44472311344549	7.68690293951651	7.30708085421501	-0.14127345498691	0.58257183913743	0.87378634860748
Merged-chr1-38987052-1	chr1	38986552	38987552	+	677.0	f1_balb.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-762.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	5.29331260105914	5.11769810835987	5.08934962533257	5.06753873512828	5.29719028000552	4.80967366721225	-0.172887201020778	0.654830676671876	0.903959451132495
Merged-chr11-54691411-4	chr11	54690923	54691923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175258, exon 26 of 28)	exon (NM_175258, exon 26 of 28)	95277.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.11841124316956	6.10995152151395	5.54325086456427	5.77284583929941	5.65265936942079	5.88160075781383	-0.352864364521768	0.295099727159753	0.691990077927385
Merged-chr5-99377895-2	chr5	99377395	99378395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-124968.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.2194203136999	6.39144914279061	6.33985089952657	6.71514486251423	7.07198648714073	6.63761688497486	0.821610025932657	0.0034044064411671	0.0462261506456645
Merged-chr12-104752133-4	chr12	104751637	104752637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-185.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	6.50659775545615	6.38980356630821	6.22702056718279	6.47411938955294	5.79096498895005	6.38565534209265	-0.231634802026758	0.480231522069081	0.824537487093219
Merged-chr6-97235097-3	chr6	97234586	97235586	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	17694.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.06512779060518	2.84005200175329	3.09459143160072	2.58126519666236	2.63684910196696	2.93908142289252	-1.45427874970302	0.0595456663245629	0.315854256248057
Merged-chr15-84260484-2	chr15	84259984	84260984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	28441.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	2.28319523015815	2.21206282324451	2.38865949630768	2.11446083062134	2.04315619531699	2.33686069558744	-0.923651830619204	0.306233558230729	1
Merged-chr17-7884975-4	chr17	7884475	7885475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41025.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	6.33263225474732	6.40650753202382	6.34481663160176	6.60364251080914	6.60167193913283	6.86271391342116	0.521347903942057	0.0512202716479165	0.288481413020065
Merged-chr8-46778311-4	chr8	46777837	46778837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	38592.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.05117471318862	7.06085731119103	6.98514469643035	7.11201252693271	7.38687376522495	7.07027682483125	0.258462875634535	0.295216271197755	0.692102568263533
Merged-chr18-67774835-4	chr18	67774317	67775317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039088)	promoter-TSS (NM_001039088)	-59.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	7.7097516243551	7.59134924172386	7.88153835817675	7.95753108617123	7.81106345540775	7.51838514042224	0.0754671580783762	0.756106833555014	0.939527320894303
Merged-chr16-11135416-2	chr16	11134916	11135916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-884.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	7.5540347767753	7.66295771179445	7.54103714131188	7.34882898874692	7.77610814641477	7.46631088077198	-0.0545977472494602	0.823142232236339	0.958214218900685
Merged-chr3-79172599-4	chr3	79172113	79173113	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26738.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.94519508993704	8.08808328277951	7.97900073496128	8.02122794383981	8.49903112088732	7.66569637468746	0.160312035547647	0.563456546360553	0.865962806552684
Merged-chr4-146455679-2	chr4	146455211	146456211	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	RMER17B|LTR|ERVK	6681.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	3.04659115079254	2.93505716718435	3.14155191356621	2.98024595125672	2.70113296976833	3.10074573883322	-0.512449438553154	0.473317872100248	0.82085565563512
Merged-chr3-135825608-4	chr3	135825113	135826113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	-44.0	NM_001135149	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	6.11554664111922	6.58755516026329	6.57190005905053	6.296392895519	6.26602705098194	6.0209088247453	-0.384262286117264	0.209066456742194	0.600338259053888
Merged-chr4-53110481-2	chr4	53109981	53110981	+	640.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	49414.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.75426321800028	4.4437038763733	4.87839628136645	4.63137120556403	4.49053958191101	4.64793745735814	-0.261305538245443	0.542221725734295	0.857067349203709
Merged-chr2-143093859-4	chr2	143093357	143094357	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15464.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	3.0062959138546	3.25206785767753	3.10611661277067	2.86585010949746	2.89948425692667	2.93932304845812	-1.06618076139379	0.121120825474909	0.46546377452966
Merged-chr5-139382137-3	chr5	139381656	139382656	+	953.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	1517.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.60711049373277	7.9672841127351	7.69626434118393	7.55242485046877	7.78220150837302	7.41554262332058	-0.244293739208839	0.324538691922864	0.717544999689449
Merged-chr6-72375355-2	chr6	72374833	72375833	+	840.0	f0_balb.idr|f0_c57.idr	intron (NM_016872, intron 1 of 2)	MIR|SINE|MIR	5135.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	5.49313527763083	5.40879710630429	5.17943364519263	5.34005583800071	5.19115388705528	5.02701705249411	-0.355005433834238	0.324082305432502	0.717287790132387
Merged-chr13-23425663-4	chr13	23425157	23426157	+	896.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1791.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	3.98531676877337	3.74287666287222	3.95661907527995	4.01053602534201	4.2783535813514	3.92513848978339	0.576437601723518	0.263490201633401	0.661412232940509
Merged-chr4-99193047-5	chr4	99192589	99193589	+	829.623352	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175029)	promoter-TSS (NM_175029)	-845.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.84199633529552	6.84252278067164	6.41342518918839	6.96120717223733	7.03119469381244	6.64253876095183	0.266469376210776	0.347581119787062	0.735652974422286
Merged-chr3-59207310-1	chr3	59206810	59207810	+	591.0	f0_balb.idr	TTS (NM_028808)	TTS (NM_028808)	3572.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.26990790575852	7.13386718586702	7.30325029958856	7.20684575820686	7.49331232412441	7.28126616884541	0.155019154450277	0.519685592799169	0.845958930747247
Merged-chr9-7763952-4	chr9	7763426	7764426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133739)	promoter-TSS (NM_133739)	-151.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	7.50336846701862	7.56461747982642	7.28371477732555	7.39738995667016	7.34539645969601	7.4187556638678	-0.114351981067982	0.62186171258094	0.890876164395766
Merged-chr7-46607904-4	chr7	46607405	46608405	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	31902.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	5.63069938924412	5.69358870550759	5.19160319614756	5.55959159366535	5.4707249642197	4.9876983864278	-0.306579201570528	0.429820351620144	0.795863007201232
Merged-chr2-167257354-4	chr2	167256860	167257860	+	832.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16823.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.79877635508841	4.63331393197578	4.82603396590025	4.79227432386945	4.88007051539743	4.77776421180865	0.161677477322859	0.681403775645254	0.914693263933768
Merged-chr5-31288387-3	chr5	31287904	31288904	+	766.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	2710.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	3.04891677476262	3.01975211127515	3.11244091802969	2.95381696521007	2.68085926378009	2.88826058258912	-1.06976951573069	0.133303157035583	0.488414314866437
Merged-chr7-63897029-4	chr7	63896538	63897538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	CpG	-19819.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.75449249287397	6.69438093282689	6.6894190325203	6.965549653892	6.79052446100384	6.91378063092264	0.271273440534346	0.275832830272374	0.673242318833586
Merged-chr4-15266147-3	chr4	15265648	15266648	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	328.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	7.16379997270287	7.31669451986935	7.2606496024442	7.12546675272084	6.88056316661219	7.02181805450207	-0.360560450407143	0.136025396069127	0.492905159738987
Merged-chr13-100492587-4	chr13	100492079	100493079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153794)	promoter-TSS (NR_153794)	30.0	NM_001360706	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	5.37442978057652	5.31960810683269	5.90529917320798	5.89298148685511	5.86145008408843	5.47003540529152	0.398525951560506	0.276653194435875	0.674041208769616
Merged-chr6-30300576-4	chr6	30300099	30301099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3940.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	5.39215478900329	5.20246258854869	5.20260692538858	5.2598949005065	5.43913584285583	5.39318286356202	0.190536848243646	0.581844634589063	0.873484978987509
Merged-chr12-85531151-2	chr12	85530651	85531651	+	973.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57261.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.47086844971556	4.08171386045812	4.4433771648037	4.41895173030527	4.37191374151286	4.77561241187065	0.470688291784501	0.317408732282139	0.711302795223616
Merged-chr18-4369318-4	chr18	4368830	4369830	+	798.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040328)	TTS (NR_040328)	-6262.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	4.00862742189976	4.09618051078687	3.93264841976471	4.06666847674297	3.96047023068484	4.05155011580834	0.0146237152770473	0.976147489372922	0.994580078491863
Merged-chr8-115570511-4	chr8	115570022	115571022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136372.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.31534427828831	4.37739507998921	4.64244458931885	4.33248392427182	4.48314909563936	4.77943804483416	0.232262720189331	0.607846906645588	0.884752831355176
Merged-chr3-95633528-2	chr3	95633028	95634028	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	8548.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.80521605098219	6.83491941985391	6.99963423839306	6.87027770299829	7.20343229181297	7.09610308129214	0.290957686292936	0.253118607984023	0.65050786463028
Merged-chr11-23257461-4	chr11	23256966	23257966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	1425.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	6.77520847706784	6.42163748727828	6.80522502408962	7.23265491624871	7.18489548937332	6.97885359218838	0.721020484750579	0.00667977059963137	0.0755171141872328
Merged-chr12-111183076-2	chr12	111182576	111183576	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 1 of 3)	ID_B1|SINE|B4	1415.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	2.95588470187021	2.99306257391436	2.77624198614842	3.02343427286295	3.06774725788681	3.09897528673222	0.675894259303042	0.328443676868991	0.720626901875831
Merged-chr4-105165213-2	chr4	105164713	105165713	+	982.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	7866.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.53519269177225	3.52429082439271	3.70638758368897	3.6243313599164	3.55534790938284	3.51230187830517	-0.0688411426714676	0.902242086347758	0.977426235982703
Merged-chr8-77452101-4	chr8	77451616	77452616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	(A)n|Simple_repeat|Simple_repeat	-64940.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.63839666020902	7.8216336072024	7.3201137305214	7.2907997184	7.52131718249859	6.96823432544673	-0.477282106838732	0.0857544728475306	0.387862549472479
Merged-chr6-137757819-4	chr6	137757323	137758323	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	MTC|LTR|ERVL-MaLR	3246.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	3.52811435536862	3.53266872192194	3.79904196294075	3.45868825189043	3.09513887800693	3.29063593892969	-1.28338994202809	0.0416133344238261	0.255065732643168
Merged-chr9-116084207-4	chr9	116083709	116084709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	91154.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.79896749494181	8.2295491849197	8.02941440037121	7.86594499392245	8.13751017962955	7.72129942912554	-0.149970344985188	0.548346363097997	0.85965540331284
Merged-chr15-31332800-3	chr15	31332281	31333281	+	977.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MTEa-int|LTR|ERVL-MaLR	34978.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	5.25116654748104	5.60702330746911	4.74104385668179	4.87061992009613	4.83703929139741	4.53215181485048	-1.0571929910699	0.0188001336009798	0.155236828090734
Merged-chr9-96503498-3	chr9	96502998	96503998	+	711.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24823.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	2.92036310409009	2.90547160318539	2.9661837128072	3.02143222578929	2.92763178353333	3.15395896718567	0.481311528774496	0.475807073072667	0.82218949187564
Merged-chr2-79255958-4	chr2	79255429	79256429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 1 of 27)	intron (NM_010576, intron 1 of 27)	503.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	8.01241098932543	8.0900113031079	7.8923885620982	7.89155032669459	8.11572422954764	7.99480280250009	0.00301768115143363	0.988942137848761	0.997469976378469
Merged-chr13-20142090-2	chr13	20141597	20142597	+	708.0	f0_balb.idr|f1_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	51590.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.003854254329	2.86725069847576	2.72948522593771	2.84937081557801	3.02680873153235	3.11003379214143	0.577481321787915	0.421538558594555	0.790410339960872
Merged-chr18-49772595-3	chr18	49772090	49773090	+	791.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16989.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	3.68551418923652	3.5153582617983	3.8322952483684	3.6979413999386	3.53721089777211	3.80427317541019	0.000166981753854267	0.99976142454401	0.999955333581252
Merged-chr11-110130950-1	chr11	110130450	110131450	+	744.0	f1_c57bl6.idr	intron (NM_147220, intron 23 of 38)	intron (NM_147220, intron 23 of 38)	-35013.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	2.88607966892136	3.45681334751776	3.27993107328043	3.16823517957919	3.33013757953074	3.23748225015575	0.0629959652995989	0.927916898396784	0.983743715844859
Merged-chr8-83166093-4	chr8	83165578	83166578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027758, exon 1 of 18)	exon (NM_027758, exon 1 of 18)	726.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	8.88019326983877	9.32057470456614	8.6358137035349	8.80288803194918	8.94599814388681	8.64987128894919	-0.240678421425846	0.343903574389727	0.732645864957409
Merged-chr19-11777415-3	chr19	11776918	11777918	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_152220)	TTS (NM_152220)	7003.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	2.58654972763653	2.76356929326791	2.8400139036064	2.69874622411967	2.50980888647286	2.73259314186921	-0.465731095896133	0.541661371020658	0.856879077002901
Merged-chr3-34020860-2	chr3	34020360	34021360	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	781.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	6.57001701109536	6.29629707684781	6.03757762156509	6.84637173025796	6.10371111693703	6.07535202829514	0.120099472072105	0.737426684489019	0.933740140045687
Merged-chr7-30184829-1	chr7	30184329	30185329	+	633.0	f1_balb.idr	intron (NM_009944, intron 1 of 3)	PB1D10|SINE|Alu	658.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	5.78092721790859	5.74950278538668	5.61959458339511	5.91829005647344	5.80957290927344	5.68219395430847	0.157905442215263	0.610767690574154	0.885798953080621
Merged-chr8-33730213-2	chr8	33729710	33730710	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1704.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	2.75590216660269	2.74198305743471	2.58862522159046	2.71853836240527	2.62902021499465	3.1939517570396	0.835355953524414	0.29095721841559	0.688730956375975
Merged-chr10-70202777-2	chr10	70202277	70203277	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1887.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	3.14569312257907	3.00262629627344	3.20051755306731	3.26975793503147	3.13437893421744	3.43495521756419	0.689921362299681	0.284326764011605	0.682066593417223
Merged-chr3-146812566-2	chr3	146812068	146813068	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011100, intron 1 of 9)	CpG	378.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	6.73907836810539	6.44780837605339	6.40700358396755	6.58614611274621	6.20918942137283	6.00967942215129	-0.401552362918225	0.194007480325632	0.581296310830689
Merged-chr10-54075813-4	chr10	54075294	54076294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038016)	promoter-TSS (NR_038016)	2.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	7.65906294950869	7.69362861335842	7.37990642300208	7.47162458363646	7.49846936632569	7.13264170819768	-0.299426559615095	0.230493239355043	0.626341302534829
Merged-chr6-126939607-4	chr6	126939114	126940114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	-27.0	NM_009013	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	6.53569919538581	6.37146965018513	6.31290099006319	6.70878400613189	6.9947694264047	6.35281763108028	0.49805807003696	0.0957946588542899	0.412649682093602
Merged-chr12-100740447-4	chr12	100739950	100740950	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15330.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	5.05644969998598	4.99656536161684	5.35191886687714	4.95995847044439	5.17877220605683	4.99872043708148	-0.160563402971725	0.671482675113827	0.910528012497292
Merged-chr15-101256243-4	chr15	101255736	101256736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.74515818533491	6.36003560670547	6.58260380334846	6.70569076553349	6.70388107800913	6.59044508751501	0.157367006523195	0.562551112814292	0.865745518569294
Merged-chr6-83651011-2	chr6	83650511	83651511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	5105.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.54864945070186	6.99169842235563	6.83073294142342	6.64482197491637	6.66918625371351	6.2941671941624	-0.389214615406651	0.178240144593788	0.559365088306552
Merged-chr3-79252992-1	chr3	79252492	79253492	+	864.3333130000001	f0_balb.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40073.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.81454660475143	5.12813188494984	5.08483268952185	6.33080067340886	6.35468693242924	5.88760941893953	2.24810003125815	1.63703197074155e-10	2.08917417517581e-08
Merged-chr11-89003391-4	chr11	89002883	89003883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3980.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.16640747660185	7.32292992612401	6.99431184262367	7.22347813723722	7.29862492941346	6.81142647480455	-0.0523987712976882	0.845473348054778	0.963793053374187
Merged-chr2-13561403-4	chr2	13560895	13561895	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12916.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	4.10647955814714	4.14824064910108	4.04047606515636	4.05614510694837	4.01080149014702	4.24723010762742	-0.00495415595252772	0.991770682307972	0.998351393644539
Merged-chr8-94214507-4	chr8	94214023	94215023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357266)	promoter-TSS (NM_001357266)	-41.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	6.99471651871105	6.85691367123993	6.92199498797675	6.73624439206717	6.75025628374889	6.72735437205099	-0.290103236411042	0.237844872865127	0.634375314429454
Merged-chr12-85421007-4	chr12	85420523	85421523	+	860.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46306.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	3.24578883727478	3.10289493788084	3.23768948204068	3.08070169524924	2.89811673988127	3.46695636465343	-0.136747358466365	0.842479015264254	0.963031568058414
Merged-chr18-46741682-7	chr18	46741212	46742212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	-133.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	8.06170924589633	8.33857011870252	7.98303572878202	8.4086929797324	8.44238653532146	7.91055872970673	0.199275679396086	0.43245024325011	0.797378949195718
Merged-chr4-125065193-2	chr4	125064693	125065693	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 1 of 5)	intron (NM_175223, intron 1 of 5)	464.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	3.44474916424234	3.17837317514927	3.22997682252601	3.08559222900119	3.11323895355152	3.35741849730596	-0.442361540897345	0.492651620148385	0.831177181177099
Merged-chr6-37213093-4	chr6	37212585	37213585	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	86891.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.75152413672357	3.87275874858287	3.94102791135136	3.71365110171074	3.26359993228226	3.66286188330776	-1.02448073105035	0.082296450423379	0.379332363801987
Merged-chr13-51101601-4	chr13	51101092	51102092	+	967.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	45.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	6.86559260233613	6.82905339025123	6.70434605150986	7.28859906265631	6.51361105445756	6.84133833035334	0.18081848445254	0.553436800617844	0.862251545920931
Merged-chr7-101550001-2	chr7	101549493	101550493	+	925.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	5809.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.2716600569079	7.09310924546954	7.39324467679758	8.03627835398296	8.25909222183552	7.80370156103497	1.15909758049282	2.43052208315719e-06	0.000118681252810697
Merged-chr1-87649046-5	chr1	87648599	87649599	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	28787.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.40261321030833	6.16376070828442	6.54976705551097	6.4957084948491	6.54484301232338	6.79369775563117	0.385033968033113	0.174580320846512	0.55387428328355
Merged-chr5-24393585-4	chr5	24393088	24394088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029020)	promoter-TSS (NM_029020)	-568.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	7.27045983072209	7.21717959378327	7.13179676920066	7.52231209564308	7.53346726384442	7.11094607761023	0.299965444420323	0.230810716005659	0.62651849864288
Merged-chr13-63278348-3	chr13	63277875	63278875	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18772.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	5.89147092394543	6.29606652641264	5.60928528958358	5.47856277404596	5.58490740186539	5.24975342354915	-0.946100337149803	0.0093113581609927	0.0957831975897678
Merged-chr15-59006989-2	chr15	59006489	59007489	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	73179.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	2.57962102722738	2.53787538041393	2.66325253704078	2.53872645620123	2.43292258247841	2.54947614210928	-0.516430718551037	0.506123645504006	1
Merged-chr3-84348283-4	chr3	84347768	84348768	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31653.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	3.68574111624335	3.76921184407819	3.75561779721955	3.52056056577201	3.62083736951867	3.50578963841972	-0.633792781259327	0.251955095472941	0.649503673837057
Merged-chr13-73488890-4	chr13	73488398	73489398	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145376, exon 3 of 14)	exon (NM_145376, exon 3 of 14)	21515.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.28314026290133	4.39221638847667	4.11849748041055	4.31443483496888	3.94032199126594	4.23525018242622	-0.301027075476936	0.535744405053818	0.853668337370661
Merged-chr10-41933687-3	chr10	41933230	41934230	+	641.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	46291.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.75121768978802	3.68290463080872	3.62058562790375	3.87390661403787	3.86621832975236	3.63635867493275	0.374663603470192	0.487613057427156	0.828533944913187
Merged-chr13-45455361-2	chr13	45454861	45455861	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52083.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	7.19005751269761	7.50685784794868	7.18775184498235	6.96148596641508	7.2175717857592	7.0123264736795	-0.351417774693125	0.168230303133877	0.544673426582242
Merged-chr15-74673511-4	chr15	74673017	74674017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-947.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	4.93455946710061	4.93642583924931	5.00898309606091	4.7601630602425	4.80915535580353	5.03925961387639	-0.201736108648455	0.598616479154263	0.880808927175713
Merged-chr4-133905367-4	chr4	133904869	133905869	+	753.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-17572.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.11332857462742	3.83150277387996	4.00743896928754	3.77897722363368	3.54331072929834	3.49273946654815	-1.2329843778887	0.027180436373223	0.196322026887425
Merged-chr19-47937665-4	chr19	47937138	47938138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-74.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	5.32457538457553	5.5456270088935	5.41021656606355	5.4629837781332	5.70057082300891	5.69696716787211	0.365042260615465	0.272654038137221	0.669922585433246
Merged-chr12-100084454-4	chr12	100083965	100084965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27866.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	7.81763098856571	7.2638965858469	7.22070309910962	7.75914013160534	7.80068732898414	7.2276348087523	0.228892403839117	0.442102496358679	0.803076081297089
Merged-chr18-44392873-3	chr18	44392378	44393378	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	12378.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	3.63071424348558	4.00597567648636	4.2922598154132	3.88845384633771	3.58020102537598	4.01855364546211	-0.493561543809826	0.3924830077198	0.771172125304963
Merged-chr16-38701532-1	chr16	38701032	38702032	+	560.0	f0_c57.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11503.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	3.19358039404818	3.11305842826031	3.15977152207362	3.35943514314003	3.26311212835995	3.23237126485543	0.548443070568806	0.378928695241514	0.761463010448859
Merged-chr6-54963074-1	chr6	54962574	54963574	+	622.0	f0_c57.idr	intron (NM_172729, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	8587.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.35721815615741	3.39102216310963	3.52103598656694	3.69939717781491	3.54770108288717	3.69606710018822	0.821991115921662	0.149520245135626	0.515961080764456
Merged-chr6-5323540-3	chr6	5323056	5324056	+	872.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-25183.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.59530185855429	3.32963095626435	3.55333046851062	4.38957956825628	4.37708728943881	4.20775629936585	2.75997887055489	1.33821748109023e-06	7.00316982179594e-05
Merged-chr12-76551883-2	chr12	76551383	76552383	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3958.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.66965310211595	6.76781238726785	6.86149419047659	6.72074471397006	6.68935011822373	6.5379743104109	-0.168563642231601	0.510958090823784	0.841230724599633
Merged-chr15-77928287-2	chr15	77927787	77928787	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019913, intron 1 of 3)	intron (NM_019913, intron 1 of 3)	707.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	5.5160164372985	5.46596938028846	5.78191397395002	5.81845342868973	5.7411523262156	6.27994660437244	0.669739185020286	0.05080209600548	0.287052886352301
Merged-chr3-133335313-4	chr3	133334810	133335810	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	25200.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	4.01273782275032	3.75353479521687	3.7329476495209	4.50974567238858	4.50057973897106	4.36617311445517	1.75405502348812	0.000493889829013438	0.0104092160315477
Merged-chr3-136331318-4	chr3	136330817	136331817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	4.58005354604191	4.4888611545767	4.62588802000026	4.65063492880736	4.63437670642851	4.52717783021395	0.114163532416207	0.782623779375828	0.946629832455866
Merged-chr17-48275095-4	chr17	48274573	48275573	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172623, exon 6 of 6)	3' UTR (NM_172623, exon 6 of 6)	10778.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.30902556509713	5.39673894262002	5.77986663828551	5.78640128848545	5.93319777700769	5.76702781933064	0.626582068957702	0.0612211911245476	0.320806906674939
Merged-chr9-45055252-2	chr9	45054752	45055752	+	719.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093749)	promoter-TSS (NM_001093749)	71.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	3.66105827309018	4.26268022173246	3.59826316072216	3.11528113503844	3.19185691664346	3.55987314791558	-2.16214860019675	0.00157780932898141	0.0257171336998225
Merged-chr11-5520910-4	chr11	5520426	5521426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271730, exon 1 of 6)	5' UTR (NM_001271730, exon 1 of 6)	285.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	9.27294307862893	9.59398596422225	8.95183519971998	8.99798735767734	9.2300366389721	8.9901185827625	-0.30609211196444	0.208266922094509	0.599138226166503
Merged-chr15-10470666-4	chr15	10470150	10471150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030046)	promoter-TSS (NM_030046)	-134.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	6.33102639151654	5.73871881188261	6.13069651921512	6.49139730031312	5.44655363767875	5.76075894422383	-0.18247453678004	0.656183928126277	0.904583447232911
Merged-chr9-40325174-4	chr9	40324664	40325664	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3841.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	7.77156064624905	7.60386862856302	7.51071486814088	7.29005132780256	7.40271115322408	6.7074305331959	-0.667420722228169	0.0184794884452646	0.153365377473926
Merged-chr5-99247702-8	chr5	99247166	99248166	+	977.7589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	5261.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.58722032684902	7.56704213928383	7.51655781437853	7.50018738190042	7.74854527576274	7.33780296606376	-0.0122387316493118	0.959184717957524	0.990174309444982
Merged-chr7-80064463-4	chr7	80063959	80064959	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	10798.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	6.44286381674737	6.52521156575039	6.50171235238064	6.22680625114551	6.05797002525995	6.01426006495292	-0.6387703986551	0.0206871174464892	0.165020963329256
Merged-chr7-100122362-2	chr7	100121862	100122862	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-862.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	5.63847776057449	5.60768667735047	5.03904361271162	5.4677616639013	5.63705763669275	5.10660875506185	-0.0655969102438394	0.868258582376655	0.969642939011354
Merged-chr1-136683370-4	chr1	136682888	136683888	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045324)	promoter-TSS (NR_045324)	-8.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	6.29810866210473	6.33568111330314	6.5104750574545	5.88904983875798	6.30804501711676	6.31950257000984	-0.317341262211922	0.287734961294139	0.685149114565096
Merged-chr3-27217230-4	chr3	27216757	27217757	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	34253.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.25948436044213	4.55499358866262	4.81468454402796	4.19602683715337	4.34279773557685	4.42787639484782	-0.585320214278345	0.210844200616023	0.603153444661123
Merged-chr8-90938622-4	chr8	90938120	90939120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	6371.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.83978099291672	5.08165924015781	5.15205855225503	4.66548823244164	4.90080854575925	4.72191986438956	-0.561867098933968	0.159045595309315	0.531054008607442
Merged-chr1-131094079-4	chr1	131093569	131094569	+	945.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	3774.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.1507163943861	4.2603078630294	4.35035966167654	5.03314528120817	5.04669691864079	4.97449020094393	0.775083563904299	0.120945693473128	0.465085864763572
Merged-chr6-50037700-2	chr6	50037200	50038200	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72541.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	6.32214725323909	6.12806316216561	5.81772112670884	6.25486041729854	6.32116434548599	5.8534693316575	0.0912906989624685	0.778788007077741	0.945522616078277
Merged-chr10-14117181-4	chr10	14116685	14117685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	150806.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.24987357661125	4.93130278429925	4.8982266203608	5.02308689819961	4.73454971543145	4.59178325492208	-0.529474133845773	0.198883367999043	0.587343866831168
Merged-chr7-83857345-4	chr7	83856851	83857851	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26990.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	3.59752787310527	3.41080490498452	3.40061706670575	3.5166107663679	3.05269932238886	3.2990731877818	-0.671176128810979	0.297054774301588	0.693644655668365
Merged-chr1-36277457-4	chr1	36276961	36277961	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4036.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	2.57819308428395	2.43842715164013	2.39993538667071	2.53637202145204	2.48555051966785	2.84800388518112	0.870129157500797	0.285791502668062	1
Merged-chr4-102565887-3	chr4	102565448	102566448	+	902.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-4112.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.67886808759056	4.49063584507454	4.61404076872542	4.51764114147677	4.68103533719626	5.18901381536874	0.513122868972735	0.250551937633456	0.647934038618991
Merged-chr16-94523826-2	chr16	94523326	94524326	+	736.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	2803.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.48674441030519	4.26752729962238	4.29142181581727	4.49584440558293	4.21821443547497	4.21894496684945	-0.0973560720193011	0.832527667624034	0.960616839788396
Merged-chr14-70777537-2	chr14	70777037	70778037	+	780.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010071, exon 5 of 5)	exon (NM_010071, exon 5 of 5)	3156.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	5.16023136774582	5.41273772337498	6.0476146463493	5.00647848720309	4.64697037913973	5.80724613028169	-0.62642958350999	0.43663809849389	0.799551248563286
Merged-chr16-30059493-4	chr16	30059003	30060003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5854.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	3.94571139930242	4.1247414826317	4.12812525906468	4.18949814154808	4.31890115198815	4.24240465208047	0.52645491867697	0.264116481891586	0.661984744638823
Merged-chr11-8566665-4	chr11	8566179	8567179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97856.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.03921262052544	6.99160600349691	7.03983577824746	6.97544550596523	7.16338907034006	7.04514828705493	0.068167154770799	0.775848315873183	0.944804182096302
Merged-chr2-6720283-2	chr2	6719783	6720783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	1379.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	6.48985162999518	6.80284755782758	6.61286784076108	6.74910571505012	7.05496573913626	6.6887835227751	0.322921059728745	0.241358973840139	0.638385260200477
Merged-chr18-80705354-1	chr18	80704854	80705854	+	632.0	f0_balb.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	2819.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.35190062903806	6.24845488411963	6.26848792792398	6.07107828194779	6.24463287627889	6.32836314793164	-0.125443555056257	0.653407769399253	0.903363954408982
Merged-chr15-81511845-3	chr15	81511294	81512294	+	975.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45478.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	6.37697978777948	6.61549380117325	6.72833742516799	7.00443508615046	7.31720403327654	6.87818679185933	0.796679652381495	0.00392406903818901	0.0512098394808079
Merged-chr7-80427899-4	chr7	80427390	80428390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-22454.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	5.90481443969009	5.87437167271269	5.78592580456867	5.99986698660274	5.82037084148734	5.89779681982609	0.0803599555108843	0.788371816601642	0.948947490391584
Merged-chr10-69888633-4	chr10	69888126	69889126	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170729, intron 16 of 40)	intron (NM_170729, intron 16 of 40)	-36906.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	3.15692282426226	3.41118319842237	3.48127403704447	3.34174634162816	3.24072084330799	3.44589416621089	-0.0508033049688059	0.934526603785426	0.985727536128156
Merged-chr8-94192813-2	chr8	94192313	94193313	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13724.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	3.02408405513789	2.78849439922427	3.17101367192161	2.95704189546785	2.77033083810216	3.01732175061016	-0.399320155065971	0.575748198401946	0.87137539535607
Merged-chr10-8885393-3	chr10	8884888	8885888	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	682.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.54569698018673	8.83685217032172	8.34909794271903	8.47049710913034	8.81067174069509	8.29094446737684	-0.0675496082519108	0.790295998396785	0.949368241827272
Merged-chr17-45619120-4	chr17	45618611	45619611	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17009.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	6.09167123551178	6.3157653682198	6.57567792001288	6.55830119973503	6.86309470058723	6.68299751060548	0.61087243998222	0.0345834209119563	0.228002320516763
Merged-chr15-36683062-4	chr15	36682548	36683548	+	891.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74075.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.51130902275103	4.47619037712501	4.77753299772502	4.32575974167899	4.36482997574858	4.73512417414679	-0.270819371971404	0.545140549194292	0.858019423019685
Merged-chr13-5870054-4	chr13	5869551	5870551	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8562.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.54990182500794	6.4202496882875	6.27060731904979	6.35495160037079	6.27952645525295	6.50052418760068	-0.0845345741061306	0.759896398495772	0.940572672765463
Merged-chr2-126495997-1	chr2	126495497	126496497	+	687.333313	f0_balb.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3850.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	5.00789829839089	5.18975349943336	5.4970531163014	4.48534480865322	4.587447127025	4.82577886243908	-1.34037362631466	0.00116605889230798	0.0202975536511025
Merged-chr17-27819480-2	chr17	27818942	27819942	+	973.714294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	1100.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	6.45677464977426	6.61084113309531	6.99080678692424	6.69108132449988	6.89930379776783	6.43132705155937	0.00151162134147482	0.995986190621053	0.998961028701257
Merged-chr1-131295299-2	chr1	131294799	131295799	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-15736.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	2.96331709085274	3.03514999870398	3.29470774401707	3.06852603260977	2.7401885073368	3.14839448362208	-0.488395838950397	0.494746320304812	0.832098209532918
Merged-chr2-128794768-2	chr2	128794268	128795268	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-23535.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.24218446967723	3.95500411231643	4.46504961693625	4.25663293212517	3.91235676792012	4.45255522722533	-0.0344515910558347	0.947016348452838	0.988007649185823
Merged-chr4-101741144-3	chr4	101740597	101741597	+	910.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	RMER15|LTR|ERVL	23690.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.6295953793325	7.00599315034643	6.90041115066145	7.06735327400069	7.17024539169608	6.97272332692441	0.34066744545398	0.189048473116513	0.574645479326324
Merged-chr2-45114091-4	chr2	45113574	45114574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-795.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.64590627259721	6.66269542017331	7.11871860585161	7.04710994512792	7.27330398756255	6.77822887369483	0.367330348628554	0.205100029374601	0.595694220420628
Merged-chr9-71896595-4	chr9	71896094	71897094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-498.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.86769103030912	7.28710534107344	6.49287116290675	7.1526013224808	7.42691156737137	6.70257941017183	0.306668838488957	0.358892988552544	0.74519810754794
Merged-chr5-9032823-3	chr5	9032324	9033324	+	802.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-35678.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	2.83099153594465	2.66132278233908	2.67387025043847	2.77729881677089	2.77747013823257	2.99048718625387	0.623099265738341	0.395442804559066	0.772833669416666
Merged-chr6-115468167-3	chr6	115467663	115468663	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	46097.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.30019672382011	5.2394567791713	5.31529282224296	5.00969883286651	5.3070717745423	5.2211192416905	-0.189400712015167	0.594260950501887	0.87896873523466
Merged-chr13-51839808-3	chr13	51839309	51840309	+	960.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6866.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.96418264902778	4.13234218359072	3.70768913136009	3.73462275284033	3.60778364766386	3.54984395849711	-1.04350179458674	0.0607943066725666	0.319394662811651
Merged-chr9-110652490-4	chr9	110651998	110652998	+	810.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1663.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	4.11540724568843	3.77461316207219	4.18605701614641	4.08397852543764	3.76587117451948	4.33666832595984	0.119006076215997	0.825877130576422	0.958980508812612
Merged-chr3-97868247-4	chr3	97867730	97868730	+	857.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	CpG	20477.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.82985584786828	3.58546068920013	3.37690326327281	3.32699535532902	3.29703596352319	3.56220105013456	-0.820377785097042	0.18039964382405	0.562200321386632
Merged-chr15-59865338-3	chr15	59864844	59865844	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70385.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.55481399402213	5.53595384585453	5.75864032395761	5.2752708751821	5.56676799569275	5.17888204374506	-0.472092958235617	0.17874049563845	0.560054633198232
Merged-chr16-33345201-4	chr16	33344704	33345704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	35532.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	6.11525138394233	5.88962158295772	5.68942739024922	6.049156735253	6.16898994148082	5.86095975809768	0.210794596458878	0.504471879345928	0.837727751066034
Merged-chr8-108784576-1	chr8	108784076	108785076	+	1000.0	f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	B3|SINE|B2	69932.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.3836842025462	3.64934638289671	3.35470033314177	2.83826982670286	3.14880389325401	3.13368647245244	-1.7975690793525	0.0118578670395601	0.113228069844815
Merged-chr8-115650417-4	chr8	115649930	115650930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56464.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.90961423427851	5.63802034721349	5.79140626207389	5.55863091974816	5.52012620406125	5.70032353779106	-0.359903144019731	0.260082415207379	0.657639335234922
Merged-chr4-43262983-4	chr4	43262367	43263367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 38 of 39)	intron (NM_001081413, intron 38 of 39)	-4292.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	6.41649393180318	6.06703230064825	6.09499926044961	6.36580059465661	6.01076146041085	6.17764325583095	-0.0307686479263783	0.91958283619277	0.982040931170308
Merged-chr6-51523462-2	chr6	51522962	51523962	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	-441.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.32290433725902	5.39051148785753	5.56221640086225	5.05858440543975	4.69175739611009	4.8229634608627	-1.17110008075181	0.00197367162189408	0.0306562009174094
Merged-chr7-133053031-4	chr7	133052532	133053532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	28828.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	6.53097228975915	6.5144741806853	6.60744775843171	6.36383196889031	6.44582831081637	6.61743956681136	-0.120218583350347	0.650077835363493	0.902490598720727
Merged-chr5-122158211-4	chr5	122157674	122158674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-105.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	6.23174273326043	6.17296281719414	6.39899765927866	6.30588493817723	5.99715070590084	6.16625431213473	-0.179441352075973	0.535936717488769	0.853739372607986
Merged-chr12-85372517-4	chr12	85372014	85373014	+	906.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	2203.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.21369782066235	6.22974138932486	6.75491759166011	6.41894687639702	6.61562149885119	6.58298496791259	0.212357871314024	0.480082322639835	0.824485257133086
Merged-chr8-57511715-4	chr8	57511213	57512213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008252)	promoter-TSS (NM_008252)	-130.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	7.77887361689922	8.22362520221924	7.47607065021694	7.60147567582632	7.99497632276149	7.41232708260285	-0.249059201423296	0.407096837172645	0.781292407682015
Merged-chr10-117282266-4	chr10	117281745	117282745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017372)	promoter-TSS (NM_017372)	27.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	7.49463834027105	7.78233632744153	7.27219970834157	7.36896155411606	7.53494306318069	7.26956431201642	-0.205944241122147	0.42354729120929	0.792055804178955
Merged-chr17-84957329-3	chr17	84956830	84957830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	93.0	NR_027929	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	7.57150056284018	7.89172392792138	7.67586920433912	7.66515982999574	8.1421886764648	7.67723535064849	0.193082315068676	0.454862161800161	0.810644279360616
Merged-chr4-119536765-4	chr4	119536273	119537273	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004178, intron 1 of 3)	intron (NM_001004178, intron 1 of 3)	1996.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	4.22993874524312	4.16608235675007	4.30677901561363	4.09540905803758	4.11837090598919	4.05212302469959	-0.393765106131927	0.400847316109246	0.777027234158915
Merged-chr17-8845355-1	chr17	8844855	8845855	+	758.0	f1_balb.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-4630.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.11008160324394	2.92521925645125	2.87074432644692	2.64151047879658	2.53153498714748	2.69086200061983	-2.02600430684487	0.0099674057844808	0.100177385489014
Merged-chr3-86141772-3	chr3	86141299	86142299	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016959, exon 2 of 6)	exon (NM_016959, exon 2 of 6)	869.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	6.8902803266926	7.08618079986947	6.83694833869731	7.37314155779852	7.08449099159747	6.6287538097929	0.193980507350946	0.508508696064748	0.839818423824339
Merged-chr9-53666407-2	chr9	53665907	53666907	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 1 of 17)	intron (NM_001161618, intron 1 of 17)	1100.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	6.06251019570822	6.38639072667001	6.19447064226742	6.34401945273007	6.23269359198054	6.10269900134775	0.0165516072346549	0.954630067765227	0.989617250984245
Merged-chr4-130826946-2	chr4	130826446	130827446	+	735.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011520)	TTS (NM_011520)	34409.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.50146361226394	3.24336829093683	3.59164226934555	3.66594908653478	3.43205220510228	3.50202672445475	0.321438958768554	0.590373630511915	0.877218317361274
Merged-chr9-99382712-4	chr9	99382202	99383202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24172.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	5.01589193155768	4.51685785548478	4.598815763157	4.48795926614885	4.31855330081589	4.30915918318895	-0.884417464681029	0.0512664031797143	0.288539967246866
Merged-chr14-50357806-4	chr14	50357314	50358314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205819)	promoter-TSS (NM_205819)	-100.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	4.27366657262249	4.32403595776028	4.63568522520018	5.36944260532859	4.9056815231611	5.31663451775966	1.83086694813997	2.13002315861484e-05	0.000769917319643889
Merged-chr13-23716457-4	chr13	23715929	23716929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5575.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	6.85374123225317	6.74138666439617	6.65174459653118	6.61770931936373	7.06315729937462	6.80634913734075	0.147115184820013	0.588232575689276	0.876237788811978
Merged-chr2-141008638-4	chr2	141008131	141009131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-337155.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	2.301237443934	2.16394506283806	2.21329707426003	2.28761475456949	2.12952875505375	2.41831209096036	0.350268616832855	0.687869770836266	1
Merged-chr12-26439507-4	chr12	26438958	26439958	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16994.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	6.35722620657926	6.36509190645672	6.4241665625788	4.7790277198681	4.40250832709504	4.58577022817888	-3.68057642675199	3.14646290482692e-21	2.5174123594696e-18
Merged-chr16-16575191-2	chr16	16574691	16575691	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14972.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	4.067806798003	4.48164998681063	4.16929201064066	4.46413820107136	4.3666210874323	4.62540948310174	0.579872093805036	0.219383181639922	0.613594479929232
Merged-chr1-123919844-4	chr1	123919363	123920363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	125696.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	5.40851568485956	5.3075070860668	5.45092482324099	5.29056326514292	5.34431239994791	5.45596069175166	-0.0497426254481969	0.882523186769587	0.973184220613163
Merged-chr10-127668244-4	chr10	127667734	127668734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	1111.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	7.82825131792459	7.36938453935035	7.54168094886893	7.80320237774183	7.94625630482952	7.75627591524014	0.352636524624378	0.149554687852323	0.515980886194382
Merged-chr5-124470733-4	chr5	124470315	124471315	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	7420.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	3.9385401988117	3.89670421301951	3.70736790881432	3.48181944415116	3.46553328645981	3.77767576457392	-0.963764150437173	0.0859840420170348	0.388266185001677
Merged-chr14-103187288-2	chr14	103186788	103187788	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	Lx8b|LINE|L1	-87722.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	4.29052937086995	4.18685790975647	4.22186252449209	4.23377326003938	4.33060346799251	4.09874236865313	-0.00351607295787859	0.993950262854832	0.998866496397029
Merged-chr15-99388851-2	chr15	99388351	99389351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4096.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	5.03636144948686	5.07819869851357	5.08984229397973	5.19794378861502	5.05809194489218	5.21964253701453	0.182920193242404	0.610118503098721	0.885428451824695
Merged-chr9-73039637-4	chr9	73039065	73040065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308425)	promoter-TSS (NM_001308425)	134.0	NM_018889	55981.0	Mm.139905	NM_018889	ENSMUSG00000079469	Pigb	Pig-b	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding	5.35786110934024	5.65976187280627	5.47866783196835	5.62549252465702	5.70138077061576	5.75941046556469	0.347139307135006	0.28820998251024	0.685555138616531
Merged-chr3-130800994-2	chr3	130800494	130801494	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70596.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	2.90033854201022	2.72586110184637	2.96217658975124	2.94600119167436	2.48139726220611	2.97673688033863	-0.219595975291044	0.782813053611984	0.946764786373054
Merged-chr8-24424434-4	chr8	24423933	24424933	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14513.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.55512747327876	4.29147547014358	4.76727945939003	4.62914474114599	4.60421895549807	5.26920970979647	0.734523260417412	0.119008021377335	0.461133989319696
Merged-chr1-181144299-4	chr1	181143803	181144803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-99.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	6.44749462012439	6.74392447383813	6.2515641255329	6.69107487141705	6.67195537774008	6.49197021021492	0.186413744189128	0.514657202726108	0.84317472508931
Merged-chr3-107120083-3	chr3	107119440	107120440	+	826.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18373.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.83299546073085	4.99136304317432	4.52726236193147	5.0919250146208	5.00493400153384	5.03913807757027	0.507134515809759	0.207182608168368	0.597920729067479
Merged-chr18-5334912-4	chr18	5334421	5335421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	-114.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	7.50898271863407	7.1748473774458	7.05841039240242	7.55522916504455	7.37249915246553	7.20755151601762	0.178990365412534	0.494179360285595	0.831821998694449
Merged-chr16-23127808-4	chr16	23127296	23128296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145480)	promoter-TSS (NM_145480)	-66.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	7.90717006603021	8.17528366113374	7.87214691251387	8.15036451909142	8.18342419473323	8.08772726011384	0.206158184104223	0.350202984214224	0.738254117598179
Merged-chr11-103374758-4	chr11	103374248	103375248	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11056.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.95707701129292	6.92421687503598	6.3608689453758	6.54845370648802	6.58371690497766	6.59152207153887	-0.337279433349021	0.244643316404929	0.64198815440115
Merged-chr5-146757434-4	chr5	146756899	146757899	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	37557.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.50845185790889	4.37835088331981	5.08756326545845	4.44260502003248	4.84787689613314	4.78850075006932	0.0506688239541593	0.914834882079238	0.980938755430376
Merged-chr16-91933382-4	chr16	91932890	91933890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1760.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.29603365366184	6.18822436912519	6.24634390205365	6.23914685837493	6.44137448798459	6.34592107348202	0.173405244428809	0.52843066979134	0.85053360857083
Merged-chr18-3281914-4	chr18	3281421	3282421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	-174.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	7.29939155017175	7.86203850308582	7.53982310740171	7.43433275251792	7.85153102585257	7.34078645780935	-0.0302273877090577	0.914693781018574	0.980912729144991
Merged-chr19-18664084-3	chr19	18663589	18664589	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6691.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	2.64253023784962	2.72572675590508	2.85810097052968	2.62493927631776	2.67029003687657	2.75228595322316	-0.322355769557046	0.662956248467571	0.90692994613967
Merged-chr6-113648082-2	chr6	113647582	113648582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	RSINE1|SINE|B4	9615.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	3.33695306318784	3.1885826039762	3.73760615842772	3.22039791357512	3.33808780716726	3.71280673504471	-0.000705700246266391	0.999143297045578	0.999864283693757
Merged-chr2-102973084-7	chr2	102972569	102973569	+	955.1825560000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71404.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.49790780414736	6.2692583058803	6.27789528725012	6.25545553345632	6.51958344331329	6.37733255518539	0.0614010508473581	0.826891706012854	0.959278302444461
Merged-chr6-97311432-2	chr6	97310943	97311943	+	712.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-58663.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.44665409079909	3.22182416669075	3.60206791021403	3.19018908190428	3.37384975741526	3.41268692533651	-0.378186208589597	0.543337284300635	0.857551302506722
Merged-chr11-60837999-4	chr11	60837449	60838449	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	7318.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	5.8373406199625	5.77654699195927	5.90307953680461	6.05790894333119	6.23827930386009	5.70313357170512	0.346021549621594	0.277828302693442	0.675063145291748
Merged-chr4-119293949-5	chr4	119293484	119294484	+	998.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011732, intron 1 of 7)	CpG-10232	529.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	7.95302809125686	8.05238914326485	7.87674249707983	7.96261081509083	7.83776144144341	7.86840867951235	-0.108194328666631	0.61272053301157	0.886896583644893
Merged-chr3-21634993-4	chr3	21634516	21635516	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E2|LTR|ERV1	-441636.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.68864758880482	3.49382934108875	3.73795512100503	3.62671344957577	3.60629820502174	3.94661312464828	0.299759215632736	0.593780539489279	0.878617380005049
Merged-chr12-80231620-4	chr12	80231149	80232149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	28722.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.28752594274031	6.1148932980316	6.49908574465237	5.99289954469536	6.0913070520125	6.50840260316732	-0.159464683419105	0.610491126088775	0.885618453459863
Merged-chr1-33900327-4	chr1	33899841	33900841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	7280.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.69881457734255	5.48520160518475	5.40067847342156	5.25440452336976	5.29915637269106	5.20470845811096	-0.553292816445779	0.106255794905337	0.435212019812124
Merged-chr1-91041072-2	chr1	91040572	91041572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	RSINE1|SINE|B4	-12372.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.57094923681525	5.33191511979873	5.46525196753415	5.68595297731787	5.31070612887132	5.71764623971025	0.217916173716729	0.531443794405452	0.851620129896752
Merged-chr14-55697460-4	chr14	55696938	55697938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-15621.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	6.78687127863808	6.9156039859947	6.80945609372706	7.15368864111619	7.54589162114414	6.73865808402321	0.550570007623975	0.0637934777560307	0.329084172171346
Merged-chr7-105633650-4	chr7	105633154	105634154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285871)	promoter-TSS (NM_001285871)	-83.0	NM_001285871	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	6.02848389914267	5.63202137061541	5.99111624381853	5.78892002738704	5.39857949843966	5.79553284693599	-0.412025051908736	0.227398481135442	0.622496973615609
Merged-chr6-38938635-4	chr6	38938152	38939152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	19666.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	8.07048602026113	7.94495299994852	7.56241672248575	7.70574597511715	7.99167560577254	7.70605041951898	-0.101676679561857	0.686993433595529	0.916965854132552
Merged-chr13-99352543-2	chr13	99352043	99353043	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	MTA_Mm|LTR|ERVL-MaLR	7757.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	2.47446133329537	2.50565084226335	2.47182137259403	2.53808696776035	2.45836742724796	2.85088884002116	0.783399176604179	0.328194393758172	1
Merged-chr17-37044869-4	chr17	37044418	37045418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	-1048.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	5.75059352944164	5.37475844993374	5.58337581095808	5.64218913820906	5.66979100128578	5.12684508607043	-0.117257603149054	0.749944044678587	0.937463855381525
Merged-chr10-128743478-3	chr10	128742945	128743945	+	595.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358745, intron 3 of 25)	intron (NM_001358745, intron 3 of 25)	631.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	4.96280236495027	5.41059830662288	5.35822369251756	4.7496199535034	4.87803645986129	4.64872148906081	-1.04249506794482	0.00977904640429994	0.0989535319480711
Merged-chr12-3904113-4	chr12	3903622	3904622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	12378.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.32751632794842	7.37227687309398	6.87212824592163	7.01248712770517	7.2707356327331	6.60869669600397	-0.319588111600989	0.289056048331531	0.686585471998231
Merged-chr4-43420010-4	chr4	43419517	43420517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9117.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	7.69418223005716	7.65645006848154	7.32560056639755	7.02879100953992	7.31961131150098	7.24286570666319	-0.547225730439378	0.0287484095002813	0.203239013199888
Merged-chr2-52957666-2	chr2	52957166	52958166	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	99798.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.62492349272838	3.12926111209687	3.46504089219502	3.40408312576373	3.27373518013102	3.06064346102661	-0.64917835649199	0.336089737520576	0.726127668050063
Merged-chr12-88437082-2	chr12	88436582	88437582	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 4 of 9)	intron (NM_001361598, intron 4 of 9)	-59759.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	2.54112695350994	2.68608986490241	2.73275098461984	2.72472733067081	2.99518564019591	2.98580216523153	1.34132785767654	0.0755654924130294	0.36188209885772
Merged-chr6-5093813-4	chr6	5093313	5094313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	MLT1F2|LTR|ERVL-MaLR	100133.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.82573265962381	6.80295942153403	6.96797389890703	7.01105083964527	7.218163017109	6.89955561430151	0.300495602674745	0.234315661119884	0.630452522567377
Merged-chr12-85346600-4	chr12	85346087	85347087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-7225.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	7.85911816406194	7.76351623590335	7.63285013329249	7.8849135298106	8.24854886050975	7.80720652381093	0.34899201232931	0.149250547195891	0.515532044293221
Merged-chr1-64879120-1	chr1	64878620	64879620	+	577.0	f0_balb.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	77704.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.17142732085706	4.29195771197936	4.48403387009792	4.11339303092343	3.97570961978825	4.43141879134541	-0.382970470877992	0.432510791351397	0.797386699146392
Merged-chr13-20112747-3	chr13	20112254	20113254	+	877.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	22247.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.04609774652058	2.71224706776557	2.8404545224034	3.06435435277818	3.09019003502404	3.15596578086023	1.05934139561855	0.136603791203434	0.493740502092718
Merged-chr6-17284059-4	chr6	17283578	17284578	+	786.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	2893.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	2.88672463842919	2.80902474302822	2.85923389055127	2.6845956053101	2.84588261061247	2.61432536731596	-0.653291018817395	0.382771789498769	1
Merged-chr14-103885107-2	chr14	103884607	103885607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40631.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	2.71474970161601	2.80318393020712	3.02692487804049	2.82833614048669	2.85064158786607	2.86706906865938	3.12816066772024e-05	0.999965062789325	0.999986582743456
Merged-chr19-4057378-2	chr19	4056878	4057878	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362043)	TTS (NM_001362043)	2069.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	2.57407728907721	2.64036779302571	3.16805981666941	2.59397061038781	2.26643890492665	2.86002801277896	-1.04587364812757	0.493795967112972	0.83163003018319
Merged-chr13-23879830-4	chr13	23879337	23880337	+	804.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121611, intron 8 of 12)	intron (NR_121611, intron 8 of 12)	9564.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	3.41681929394772	3.06949056208102	3.08888174943952	3.26127449448469	3.22624230009658	3.70293589416193	0.796437973548966	0.238962005316509	0.635631523582239
Merged-chr16-36625945-2	chr16	36625445	36626445	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	40132.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.64537659171381	3.57656546639411	3.96978475964612	3.49850418758642	3.26339143053352	3.761968720105	-0.767850231257531	0.206915446770683	0.597718538515663
Merged-chr18-38385141-5	chr18	38384642	38385642	+	860.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33765.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	5.82337308413366	6.1648370191411	5.96887288794816	5.95704809541675	5.8006812194833	5.75633791182245	-0.270563222531094	0.382568385154238	0.764107846408276
Merged-chr5-96793464-4	chr5	96793000	96794000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013470, exon 1 of 13)	5' UTR (NM_013470, exon 1 of 13)	115.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.67606300208822	5.54580996132438	6.01350505118115	6.11293330892007	5.95613850099825	5.89090569964532	0.436641331151992	0.173921833871033	0.553156790487764
Merged-chr13-77135449-4	chr13	77134911	77135911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145676)	promoter-TSS (NM_001145676)	57.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	6.23049461865235	6.25068074799043	5.68912785333186	6.01873476840038	5.9311419387637	6.01216655784249	-0.191372775532758	0.550545322085066	0.860709619458349
Merged-chr15-38709697-4	chr15	38709235	38710235	+	893.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18781.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	5.49891598602459	5.45357883650204	5.74063680673684	5.42702862437291	5.45387168765768	5.36088039017317	-0.272432560301044	0.414562500937361	0.785861805729108
Merged-chr2-129513969-2	chr2	129513473	129514473	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22629.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.02207035155496	5.96471911322746	6.02170752810018	5.77656564280981	5.90240245776793	5.89692722963127	-0.248415627103142	0.397971275522464	0.774751853640649
Merged-chr7-141392152-4	chr7	141391659	141392659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011528)	promoter-TSS (NM_011528)	-1.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	7.09381651551003	7.54293905502772	7.18735003644151	6.83706265592716	7.32946539524806	6.87929720744008	-0.371445509930941	0.196655800814285	0.584634530499661
Merged-chr1-182369647-4	chr1	182369173	182370173	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28067.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	4.64487965605229	4.59850458296945	4.47336506347059	4.59767673913104	4.33681023137869	4.58271920906642	-0.187702882086025	0.661939189643886	0.906507327168392
Merged-chr2-27548144-2	chr2	27547644	27548644	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	32997.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	2.88903078551606	2.81655588289703	3.02489513592557	3.4021297072622	3.49870549772751	3.16199558647074	2.12756914466744	0.00230414870477545	0.0344454914529205
Merged-chr4-155732781-4	chr4	155732261	155733261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-2043.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	6.80101289164149	6.68534899400244	6.72442852079372	6.83218151466413	7.18031783411457	6.63306581105664	0.275931777039801	0.319805172621816	0.713720330530954
Merged-chr11-3514801-4	chr11	3514320	3515320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053267, exon 1 of 5)	5' UTR (NM_053267, exon 1 of 5)	136.0	NM_053267	114679.0	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	3.29790683803032	3.50222097124612	3.80731612186442	3.38758964971665	3.3302434566188	3.12331887024055	-0.97528132423411	0.133961052261747	0.489359523952737
Merged-chr12-40553804-4	chr12	40553300	40554300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	107747.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.75124660377247	5.71817651952253	5.8462144741235	5.9526580185911	6.05141339150921	6.09016736558065	0.465063179779928	0.116038311145454	0.454881550635583
Merged-chr7-80629540-4	chr7	80629003	80630003	+	787.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-6514.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	4.42223442151607	4.7137969510721	4.95881689422147	4.89769746172334	4.66611988942016	4.65509646614998	0.0890731699993514	0.836497290634308	0.962001762335242
Merged-chr8-70211910-1	chr8	70211410	70212410	+	1000.0	f1_balb.idr	intron (NM_001007570, intron 1 of 7)	CpG	371.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	6.31700160367362	6.19958261629956	6.07872743618178	6.28968104149885	6.27981349834235	6.0470186154795	0.0164907041002939	0.954162943716264	0.989495550016789
Merged-chr4-59415516-2	chr4	59415016	59416016	+	889.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	23117.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.43426760966116	2.42634052894951	2.20919544230896	2.4703160338387	2.25962345346387	2.67618155541829	0.70044922062852	0.430047103608493	1
Merged-chr2-113450109-4	chr2	113449604	113450604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	9040.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.6233752862573	7.81549466495878	7.52687002140103	7.01996772558697	7.4680509750885	7.29533939406633	-0.56489180100463	0.0262615477993294	0.192407402420234
Merged-chr8-115423910-4	chr8	115423420	115424420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	282974.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.71294254026002	6.97407344700117	6.26216710887511	6.53839094744292	6.57949438291401	6.38581930772921	-0.298217065163578	0.327991818528082	0.720172556707989
Merged-chr12-100499711-3	chr12	100499198	100500198	+	677.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 2 of 19)	intron (NM_001033213, intron 2 of 19)	21124.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	2.92663271551394	2.56607011569957	3.05124544882885	2.42193965863639	2.34885579965125	2.7208271164927	-2.1201316702124	0.0171298591764068	0.145651065026615
Merged-chr3-137980864-4	chr3	137980368	137981368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	681.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.9264007620719	7.35005720988342	6.84058254109378	7.02781966595862	7.44528454128988	6.85254576416804	0.117135671561264	0.69601531158874	0.919291538728398
Merged-chr4-109253840-2	chr4	109253340	109254340	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285895, exon 9 of 9)	exon (NM_001285895, exon 9 of 9)	18208.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	3.88125465299515	3.87399687751894	4.09651988886564	3.74983247407689	3.72103332016351	3.83521335402829	-0.578989583995602	0.26473928410746	0.662666328517541
Merged-chr2-181277010-2	chr2	181276502	181277502	+	670.0	f0_balb.idr|f0_c57.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	10964.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	4.71536282417364	4.80637030205019	5.10552906195102	5.37640392585733	5.10406968448005	5.03328412993155	0.657464401201142	0.0919885005698172	0.404026700310263
Merged-chr11-118483500-4	chr11	118482990	118483990	+	964.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6658.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	6.06464466381258	6.05866274318328	5.80200190393059	5.62827626051001	5.55946044270987	5.4336382853465	-0.797407993549079	0.0115497045383355	0.111320261233154
Merged-chr6-72140593-4	chr6	72140095	72141095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-17398.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	8.4755512022908	8.37869339457963	7.98596056252959	8.51791050629498	8.90626434263261	8.13322691233244	0.3667635363973	0.191218706444609	0.577822466760773
Merged-chr3-95434304-4	chr3	95433799	95434799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-91.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	8.83879167714117	9.2161325905877	8.3156574677891	8.75930008397555	9.14493564427663	8.35771597208326	-0.0664180193299937	0.831440847435195	0.960454943474167
Merged-chr7-45396416-4	chr7	45395928	45396928	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-686.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	6.76093440952911	6.90434259605004	6.89757852085689	6.71893623695033	7.14116904101782	6.60870213297785	0.00616630592043068	0.982446753917613	0.996008888211718
Merged-chr14-57417018-1	chr14	57416518	57417518	+	821.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7053.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	3.31044558627279	3.00529493591371	3.59606198559638	3.34752554797621	3.1290442472759	3.41143138278957	-0.0884343376648949	0.895076461443177	0.975649839525428
Merged-chr7-38106884-3	chr7	38106354	38107354	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007633, intron 1 of 11)	intron (NM_007633, intron 1 of 11)	636.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	3.40725599882308	3.26863432310145	3.32793046120663	3.42728175386178	3.31936820932754	3.39936995167633	0.173936257379104	0.770831234808808	0.943461238632766
Merged-chr3-108865858-2	chr3	108865358	108866358	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24150.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.91063895756923	4.60837231243038	5.17668883973359	4.78803123798146	4.32713193529344	4.85059415616973	-0.55704903317208	0.220110040431806	0.614507907782981
Merged-chr4-62353658-3	chr4	62353159	62354159	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	6937.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	3.90733106748675	4.12902880409291	4.34811986073956	4.02068129611348	3.95148309749879	4.24824362008695	-0.174204502323791	0.729762733036923	0.930635866770147
Merged-chr3-87349897-4	chr3	87349407	87350407	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-7974.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.29218802508385	5.44236319474286	5.65972089233895	5.79882682514619	5.79718384843068	5.74745879452475	0.597440452595594	0.0656513572830596	0.334274760543925
Merged-chr11-86963326-2	chr11	86962826	86963826	+	970.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	30436.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.90952963479921	4.4582467447248	4.74649754860146	4.683127770552	5.02037680993169	4.85047283148755	0.332762816859339	0.433005624427783	0.79758551656855
Merged-chr16-11063274-4	chr16	11062774	11063774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3024.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	6.97168303714461	6.66647108561394	6.74290084421874	6.51017796102956	6.80830006243744	6.72320468556317	-0.178281664337159	0.508510597141783	0.839818423824339
Merged-chr7-45141718-2	chr7	45141218	45142218	+	658.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145954)	TTS (NM_145954)	-5286.0	NR_102725	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	2.91997870924142	2.77774957406304	2.80187684998343	3.0705655347461	2.84310624003089	3.22840993204342	1.01979659552473	0.154023443604841	0.523165395577891
Merged-chr16-91019718-2	chr16	91019218	91020218	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-8410.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	3.17181751512592	3.06138467894156	3.29583964647937	2.94492668998453	3.11971685995633	3.0856977943978	-0.532127327843305	0.42105690726697	0.790122251976347
Merged-chr10-117909302-4	chr10	117908773	117909773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-16186.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.64511221040036	6.40279015391852	6.14810907895314	6.05364696078754	6.09106754032396	5.92386400949787	-0.659087844883537	0.0284212761962726	0.201876431672641
Merged-chr2-127378327-4	chr2	127377835	127378835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15049.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	4.27838015260005	4.02043067512108	4.31553473120919	4.6365446464661	4.86219250133328	4.96397371358396	1.55332331721801	0.000506650896754797	0.0105970262982014
Merged-chr5-65723645-2	chr5	65723145	65724145	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-25789.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	5.34564512163924	5.19222687204678	5.75824682380558	5.68434052829422	5.33676041981756	5.53776797767451	0.158214283639919	0.666920368705449	0.908463623849139
Merged-chr1-121431087-4	chr1	121430586	121431586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	19.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	7.68127513992388	8.06862056519801	7.7590265173272	8.0601206611233	8.00921576380724	7.77156218501764	0.150543695004036	0.530852514104084	0.851363932161699
Merged-chr11-58955763-2	chr11	58955263	58956263	+	689.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178218)	TTS (NM_178218)	1078.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	6.46648851031484	6.54075406418326	6.52642548636061	7.04730676141551	7.4277380357604	6.98083172077835	1.03135983710002	0.000119413644925002	0.00329557896083567
Merged-chr4-135494186-2	chr4	135493686	135494686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361484, intron 1 of 11)	intron (NM_001361484, intron 1 of 11)	392.0	NM_001347220	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	5.82528802977277	5.51122828585721	5.19395772561678	5.79800784174471	5.20967403999393	5.427523877838	-0.0845663915506556	0.828926567836797	0.959925957873127
Merged-chr14-122645709-1	chr14	122645209	122646209	+	549.0	f0_balb.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	111381.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.17240741819874	4.00179023666693	4.27930960736191	4.59137738606132	4.21879322001509	4.20960644147244	0.552010928250144	0.25070655103501	0.648153521953385
Merged-chr17-43558533-1	chr17	43558033	43559033	+	558.0	f1_balb.idr	Intergenic	Intergenic	-9918.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	5.80029566367183	5.71534716739027	5.92525944721292	5.37230429017232	5.43797564024123	5.56159131469231	-0.662615642868701	0.038736317154963	0.244050236831238
Merged-chr5-136986913-4	chr5	136986414	136987414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	-10.0	NM_001310748	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	7.78706120670292	7.74865807313368	7.56091572741791	7.63600363994187	7.84106025760044	7.48459711069479	-0.0530541682932374	0.82223466322811	0.958041123079214
Merged-chr17-10840295-4	chr17	10839824	10840824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	-35.0	NM_001317726	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	7.78636732780808	7.9825275937882	7.16918229767137	7.44683581880566	7.49344491726313	7.20078685173198	-0.450829163675388	0.120866041472958	0.464932449718459
Merged-chr9-61242337-4	chr9	61241836	61242836	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51473.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	4.25077714202748	3.94826656322527	3.92255065063319	4.51580777260768	3.94595015732912	4.37405308390481	0.668758524349042	0.20225880726016	0.59202697556912
Merged-chr11-97704728-2	chr11	97704228	97705228	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	B3|SINE|B2	1294.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	3.24062082266992	3.33290508809629	3.31800067900784	3.19382207017614	2.86456279329243	3.2785248193111	-0.767241077747232	0.254284206576913	0.651270631028434
Merged-chr9-40766978-2	chr9	40766501	40767501	+	885.5	f0_balb.idr|f1_balb.idr	intron (NM_133733, intron 2 of 6)	LTR37A|LTR|ERV1	-34272.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.60236382866459	3.57242359251196	3.51181297886047	3.33042433097747	3.05637307834566	3.24126351744788	-1.43278029616979	0.0221691003106753	0.17283298966089
Merged-chr15-63998208-4	chr15	63997718	63998718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360035)	promoter-TSS (NM_001360035)	-152.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.73126437952804	5.97688216059057	6.08124615892419	6.55222592712457	5.93997693705843	5.97467662513637	-0.208309371496569	0.576271326514082	0.871585692229598
Merged-chr17-62448271-4	chr17	62447793	62448793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	433024.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	2.34236631186725	2.33863869818592	2.48263836397274	2.36447974678802	2.37419378013755	2.15808126646431	-0.525370528123354	0.546986777730141	1
Merged-chr10-100160458-4	chr10	100159969	100160969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144648.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	6.18216481648098	6.51065589028053	6.22370619648785	6.37420504072514	6.68896576850344	6.32555221870356	0.267052006329442	0.365578889490073	0.750709036834083
Merged-chr2-3424671-4	chr2	3424152	3425152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	521.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	8.43824215276224	8.54850486771754	8.17491826903991	8.5104174941118	8.65856116573151	8.040529322855	0.0504185785285851	0.844059623904909	0.963711687630021
Merged-chr17-24152364-4	chr17	24151854	24152854	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1432.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	2.7758536659735	2.76526110686749	2.90773050144697	2.8649976604744	2.74090204860542	2.9798787778626	0.23088567686172	0.745113173057328	0.936032341688524
Merged-chr7-126801064-2	chr7	126800564	126801564	+	853.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177308)	promoter-TSS (NM_001177308)	-617.0	NM_001177308	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	2.82056931507016	2.88067066179542	2.96311757410082	2.62539419626707	2.7430363137993	2.60335165621257	-1.18749014874176	0.116737747707698	0.456206482086735
Merged-chr5-34372190-2	chr5	34371690	34372690	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2257.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	3.36508462380078	3.39882991738491	3.35437929473267	3.67431313498455	3.6883719164214	3.80141057865206	1.25295946896837	0.0285230181501627	0.202279322785198
Merged-chr14-55602561-2	chr14	55602061	55603061	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 18 of 20)	intron (NM_194346, intron 18 of 20)	-1424.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	3.79911938198545	3.9496034870111	4.22197523326919	4.41773571751263	4.37843857453523	4.1990271754764	0.981570548089692	0.0456658272088568	0.269892201910225
Merged-chr9-109059729-4	chr9	109059193	109060193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	30.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	7.6323544590219	7.32681776968749	7.26438927093732	7.52355756590386	7.641165621908	7.40178218827707	0.157047457389663	0.522159679391156	0.847473464378842
Merged-chr2-153111568-4	chr2	153111089	153112089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	Tigger7|DNA|TcMar-Tigger	3121.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.61574356914978	6.1939468223307	6.40442038234654	6.86827313822743	6.56910379285828	6.7978338672566	0.525600292607755	0.0656801753476471	0.334339656816776
Merged-chr3-133310112-4	chr3	133309638	133310638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146141)	promoter-TSS (NM_146141)	28.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	6.6819693435952	6.21715926145569	6.2797656668984	6.72462208280234	6.02499915822423	6.29939123850582	-0.0521250684935365	0.876729290989702	0.971370432413299
Merged-chr7-13037536-4	chr7	13037045	13038045	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	82.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	6.86202443763339	6.78176270494288	6.74392690452295	6.97382480749837	6.45174273687319	6.86243221014248	-0.0371460502520482	0.894210671186227	0.975424158569389
Merged-chr2-84505227-3	chr2	84504737	84505737	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046046, intron 1 of 2)	IAPLTR1_Mm|LTR|ERVK	1636.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	4.55962995688453	4.74773594736504	4.52654350798469	5.50781080837246	5.83586518034564	5.42736565654894	2.06926569853734	1.38390728650355e-07	9.52457878373757e-06
Merged-chr11-119091073-4	chr11	119090585	119091585	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4848.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	6.05625658470229	5.68648085164704	5.1438680049806	5.29232052564365	4.92292676715175	4.93536791488173	-1.22770425104952	0.00321020085551572	0.0443785334417266
Merged-chr8-14816406-3	chr8	14815894	14816894	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	T-rich|Low_complexity|Low_complexity	-72142.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.71791349665213	4.8735475779124	4.82648941662412	4.50428381135133	4.55242138569487	4.53626706894432	-0.653662258238363	0.108119876103136	0.439257782861666
Merged-chr8-10031371-2	chr8	10030871	10031871	+	692.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347309, exon 4 of 6)	exon (NM_001347309, exon 4 of 6)	24738.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	2.64365788487431	2.8015186111741	2.76615777642111	2.54105722754499	2.55668947938483	2.7173234994114	-0.755732272414982	0.319481752306981	1
Merged-chr1-134561117-3	chr1	134560636	134561636	+	788.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	CpG	958.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	4.36054083657111	4.05669605317173	4.16876786294225	4.35713391637549	3.81120119043223	4.14341499973679	-0.232336603384336	0.652499592377839	0.902986290245403
Merged-chr10-88678207-1	chr10	88677707	88678707	+	593.5	f0_balb.idr	intron (NM_011461, intron 4 of 5)	B1_Mur4|SINE|Alu	4816.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	4.39840449920994	4.47003528037152	4.31928793543364	4.19523710655479	4.29259642860429	4.55417813673849	-0.140584795775205	0.756036178709645	0.939527320894303
Merged-chr16-23988056-4	chr16	23987591	23988591	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	CpG	761.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	7.48437245738015	7.74387374046575	7.86482614514492	7.6171054463916	7.66653144694701	7.64437413801063	-0.0862750700068067	0.710754659852096	0.924459908664174
Merged-chr2-132243531-2	chr2	132243031	132244031	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027478, intron 3 of 3)	intron (NM_027478, intron 3 of 3)	4257.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	2.63496269340378	2.65170448761934	2.3890384223874	2.7288465266296	2.45558796798445	2.85133380039896	0.659297436122229	0.43030544077172	1
Merged-chr7-126794256-3	chr7	126793746	126794746	+	768.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177308)	TTS (NM_001177308)	-1699.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	4.56436996607949	4.64169936890665	4.88828048977283	5.25304925296921	4.91747100661828	5.44687208496247	1.12777796984227	0.00593405635335313	0.0692317668325585
Merged-chr3-152479080-6	chr3	152478561	152479561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 11 of 13)	intron (NM_001081277, intron 11 of 13)	82377.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.18013821089637	5.05769315474362	5.25820035609327	5.18524364613584	4.85883662338227	5.2284135416506	-0.152397069177514	0.68468699731417	0.915939480265554
Merged-chr7-140036558-6	chr7	140036036	140037036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133755)	promoter-TSS (NM_133755)	138.0	NM_001286007	74237.0	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	6.49234672633241	6.69382040750058	6.65360869747412	6.68655335557871	6.40941917847291	6.59735249814702	-0.080759311682622	0.763510676244825	0.941793063578371
Merged-chr17-46339916-1	chr17	46339416	46340416	+	573.0	f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-11893.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	5.02639219316358	5.11940009504458	5.36558164481109	4.75367045695634	4.82554666461943	5.28545360425443	-0.438440387620358	0.27607852792194	0.673407268528971
Merged-chr19-5365927-2	chr19	5365427	5366427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	436.0	NM_001038231	23825.0	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	6.02910736270466	5.24048509557083	5.48805198269784	5.85495419086612	5.72601037706335	5.35987669316355	0.058581597556742	0.88231680688626	0.973129606025635
Merged-chr8-46929850-2	chr8	46929350	46930350	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-57037.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.49838762297926	4.41155837638746	4.91148402630819	4.66212700265753	4.84498439665931	4.83646495933853	0.405845340564204	0.345324061683502	0.733676961611706
Merged-chr16-95674604-4	chr16	95674097	95675097	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27810.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.40929189484129	3.5439208417755	3.44566933262968	3.55894035978545	3.20562530146183	3.46167724050181	-0.213191065934417	0.724515604449165	0.929428093289026
Merged-chr19-29402602-2	chr19	29402102	29403102	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8317.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.11765520246918	4.1338973707672	4.27869792016395	4.55919477044802	4.22401869825053	4.55214622124595	0.737881171501789	0.112511420564328	0.448149845970158
Merged-chr17-23193227-4	chr17	23192726	23193726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	2.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	4.24624251352132	4.55394691067144	4.52469115215499	4.64424516940397	4.49789029553258	4.46472876740879	0.230237291963234	0.599670433150648	0.881127644874519
Merged-chr3-27710094-2	chr3	27709594	27710594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	CpG	358.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	7.60482311672107	7.5819546277281	7.33343881339594	7.54827703119665	7.07278017294053	7.45542923998759	-0.217340398899414	0.400858944494587	0.777027234158915
Merged-chr4-53073223-2	chr4	53072723	53073723	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 23 of 49)	intron (NM_013454, intron 23 of 49)	61343.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.52627136870577	2.35361890510174	2.82622949865932	2.38411686758422	2.31800697220643	2.49191718418423	-1.14332586632701	0.180318256802175	1
Merged-chr19-34571103-4	chr19	34570541	34571541	+	728.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008332, intron 2 of 2)	RMER17C|LTR|ERVK	-12488.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	5.98916355967891	5.78168905427118	5.7758668413611	6.54169786107407	6.47078339861907	5.96994775171564	0.858958710822349	0.00682620257204009	0.0767456645878005
Merged-chr11-31924175-2	chr11	31923675	31924675	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026252, intron 5 of 9)	intron (NM_026252, intron 5 of 9)	-41458.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	2.31794613913392	2.2819125448416	2.52045961805503	2.24046832840545	2.17883579912036	2.34415409354149	-0.817941728717773	0.340078533025768	1
Merged-chr11-117718957-3	chr11	117718452	117719452	+	830.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 4 of 21)	intron (NM_198022, intron 4 of 21)	60696.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.31269321985075	4.16930941826024	3.98488827180105	4.16376929400113	4.12162660883246	4.24800685793754	0.0111233846770732	0.981450234149377	0.995717195177154
Merged-chr2-158124276-2	chr2	158123776	158124776	+	856.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 10 of 13)	exon (NM_009373, exon 10 of 13)	22116.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	2.28660893006106	2.44950612271891	2.56764574225949	2.28398189304068	2.15354648273836	2.45664847052549	-0.907389971857877	0.298403720481658	1
Merged-chr10-127577098-2	chr10	127576598	127577598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 22 of 88)	intron (NM_008512, intron 22 of 88)	-42539.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.05437347064283	4.87130429838309	5.37757868514469	5.26405456889076	5.03291622974827	4.9184572959674	-0.0474934160640089	0.904233278555449	0.978071913797934
Merged-chr10-68132231-3	chr10	68131670	68132670	+	732.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	146556.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.87232255332579	2.92680843309739	3.16837502985419	3.04786462764399	2.78111637532983	3.2927607271958	0.27231721815676	0.704619503488245	0.922488097794635
Merged-chr6-145276426-4	chr6	145275908	145276908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25856.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.14941735363697	8.1539456054295	7.60308634576802	7.64729447660203	7.83780352254173	7.43815313253352	-0.490897142311113	0.0651909566826073	0.332868533229599
Merged-chr16-30065745-2	chr16	30065245	30066245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008235, intron 1 of 3)	intron (NM_008235, intron 1 of 3)	388.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	6.80189175907718	7.15759152346907	6.84336846369501	6.8628241307822	7.25788521961941	6.60439249377912	0.003508015501783	0.990601069458903	0.997892660866058
Merged-chr12-59133801-3	chr12	59133305	59134305	+	990.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	2352.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	5.52278022965155	5.68450811196981	5.77194137441862	5.7773795359586	5.96800292026761	5.75694681252866	0.340007608557252	0.280180809400768	0.677926210657904
Merged-chr13-67270143-2	chr13	67269642	67270642	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	2.82059094468455	3.25239188113648	2.84161769982697	3.0227325849933	2.92992116742973	3.04071564283208	0.012408029976299	0.986306256986514	0.997033990984076
Merged-chr7-125636191-1	chr7	125635691	125636691	+	608.0	f1_balb.idr	Intergenic	Intergenic	32762.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.61827412911905	2.51130603150054	2.51644213052637	3.0154662816757	2.5923826965968	2.85190499684935	1.52402379146765	0.0559039653577725	0.304407901936361
Merged-chr17-27048705-2	chr17	27048205	27049205	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8599.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	4.4023001654982	4.27685362726587	4.65122114546088	4.43158127525245	4.39986431485842	4.52346547554643	0.0174588138619993	0.968593048970445	0.992811398801848
Merged-chr5-120516273-4	chr5	120515780	120516780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5088.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	9.11070909490978	8.90202979969772	8.49502940896029	8.87550379504655	9.15380738627683	8.65288174337168	0.0670958006362193	0.795451172256801	0.951137542573805
Merged-chr8-105534121-3	chr8	105533622	105534622	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	15376.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	3.49010098552659	3.6732703675245	3.41781340357637	3.51303494906178	3.2575107962612	3.48962954006877	-0.43482350612877	0.467162147796147	0.817799124670154
Merged-chr13-9878675-4	chr13	9878188	9879188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-113367.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.57877258218935	6.48431031659469	6.5862620560438	6.76209890093463	6.92256448463563	6.66222569922651	0.389301467932527	0.13263575591437	0.48740696807503
Merged-chr9-107624744-4	chr9	107624238	107625238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	10604.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	5.04347152908242	4.94023253198533	5.4036016714953	4.92784030637824	5.48152338341461	5.59809321516958	0.464713240670328	0.253925075589409	0.651117231535132
Merged-chr12-108766643-4	chr12	108766150	108767150	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26661.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.74951598837416	7.04246085895486	7.03447699396867	6.79128124290554	7.05039148440856	7.07959063029021	0.0503229841401361	0.846910794841761	0.964139319360833
Merged-chr15-73137549-4	chr15	73137073	73138073	+	967.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	intron (NM_153178, intron 3 of 18)	47161.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	3.04484440277421	2.85251821831637	2.68097536754711	2.97681067859648	2.68550091638427	3.00868191637171	0.114570975415109	0.879486469116452	0.972134091264934
Merged-chr3-107142977-4	chr3	107142495	107143495	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40148.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	6.25613036893048	6.30402960043788	6.00428188625323	6.67396389986814	6.8434671905012	5.96485091524087	0.59730126444525	0.0830193942294841	0.381226701603597
Merged-chr7-120834542-3	chr7	120834048	120835048	+	741.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8283.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.91021782425224	5.1795409319796	4.9636519038013	5.42134381318504	5.49534090210227	5.30728622194071	0.784466677870819	0.0293198110226866	0.205862916552514
Merged-chr5-135168414-4	chr5	135167933	135168933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009745)	promoter-TSS (NM_009745)	61.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	8.95147794137872	9.07185922610335	8.36007488780909	8.62230937846355	8.78839204126135	8.46348512902175	-0.278496703269235	0.286649962971536	0.683915989073421
Merged-chr2-35327924-2	chr2	35327424	35328424	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	HAL1|LINE|L1	9085.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.83048290932323	6.94880635076133	6.8695121284587	7.02863286552059	7.09375208730803	6.70893557781008	0.123311429497042	0.632661604178164	0.895615821573662
Merged-chr13-44761022-2	chr13	44760522	44761522	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	29751.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.42362173582698	3.09536821506225	3.11191529263096	3.37500230310182	3.0640969051778	3.36046389586706	0.191324481808718	0.772856117956399	0.943912458173701
Merged-chr10-128094072-2	chr10	128093572	128094572	+	904.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	1289.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	5.54266195623173	5.6389223554621	5.77956913530008	5.87680103253543	6.11171529382948	5.62577511147552	0.451146246852891	0.169344804061777	0.546111904953782
Merged-chr2-133481159-3	chr2	133480659	133481659	+	796.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71000.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.16222368900775	5.23024241929372	6.07622137646425	5.15483154388943	5.09299479596143	5.57418768090468	-0.513474333252948	0.241407549930249	0.63840120846778
Merged-chr10-54117542-2	chr10	54117042	54118042	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41620.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	6.56759486559542	5.85594631210736	5.92402875001873	6.09460031325968	5.78573773936042	6.18805259052669	-0.237274203002523	0.504491153232477	0.837727751066034
Merged-chr4-121007439-3	chr4	121006953	121007953	+	637.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	9794.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	3.93120744785164	4.11162978250693	3.81998142226798	4.12467799833862	3.85873086187229	4.22866151426267	0.308706719035704	0.550347957933683	0.860699816966477
Merged-chr19-5457546-4	chr19	5457033	5458033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	30.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	6.84350372035805	6.98185484396305	6.64994915761879	6.66379293409457	6.5729050216763	6.24699682378201	-0.508552544744698	0.0693541486477574	0.344670608653323
Merged-chr14-15061374-4	chr14	15060877	15061877	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240562.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.29683950699166	4.62677576472872	4.72963839076573	5.32482836910625	5.24528011082104	5.09187211031516	1.49663562165944	0.00022945371767645	0.00560058226471752
Merged-chr19-46328442-4	chr19	46327941	46328941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133694, exon 1 of 4)	5' UTR (NM_133694, exon 1 of 4)	257.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	5.94422574106071	5.81954953058155	6.03216575122147	5.87304411375166	6.17844770202897	6.15661369057536	0.258500094855356	0.391695319588604	0.770697227911463
Merged-chr1-9826053-4	chr1	9825535	9826535	+	976.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	-22246.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.15841662076626	4.0565398327131	4.16829975797385	4.50631236297409	3.96181088014773	4.04262261654403	0.187966092209734	0.710543088326169	0.924358113435436
Merged-chr10-127602363-2	chr10	127601863	127602863	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	ID_B1|SINE|B4	18785.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.03898715582444	7.09090562351556	7.16764187839479	7.32272110721102	7.36750794931511	7.15102311738849	0.288960308563787	0.221029637808943	0.61561513090473
Merged-chr15-85113659-4	chr15	85113157	85114157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 9 of 24)	intron (NM_080470, intron 9 of 24)	18300.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	4.26969220080582	4.56148048889531	4.38905792535568	4.79612295039489	4.99761433693176	4.71581049682647	1.03542049791505	0.0155762709846594	0.136270671442702
Merged-chr12-38854470-3	chr12	38853973	38854973	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 9 of 11)	intron (NM_001347379, intron 9 of 11)	70762.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.47004253789691	3.67501902633999	3.45149941974362	3.2884951327027	3.20927361336362	3.57568905961305	-0.68837928989215	0.261091795890833	0.658630473017568
Merged-chr15-97948255-2	chr15	97947755	97948755	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15974.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	3.6670147776496	3.62317531491582	3.94766210699024	3.81630416407658	3.34575853902514	3.50892112679321	-0.604047694801101	0.310157635386493	0.705723331927024
Merged-chr2-167950388-4	chr2	167949881	167950881	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	18054.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.14652652487511	7.55524513365047	7.28036046182355	6.60272048783837	6.98473379094949	6.60830243953818	-0.888125790256904	0.00143665171014768	0.0239321152148084
Merged-chr4-83308152-2	chr4	83307652	83308652	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	ORR1G|LTR|ERVL-MaLR	16037.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.57517639429011	4.72063723564001	4.38719178462378	4.48971761059168	4.54270598041831	4.54353559609931	-0.128297953617366	0.764447371688875	0.941979298344481
Merged-chr6-136556340-1	chr6	136555840	136556840	+	596.0	f1_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	37489.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.00994108582302	3.06832732950368	3.05301261733458	3.00565876070009	2.95408698170542	3.00637784756245	-0.262193181584451	0.691966579523355	0.918541547639936
Merged-chr5-146764808-4	chr5	146764290	146765290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	MTC|LTR|ERVL-MaLR	30166.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.87362303313349	4.89270764887512	4.75396881645892	5.15356521144095	5.21888012325662	5.50737654660037	0.940536070612426	0.0128940717717657	0.120279139460211
Merged-chr2-32495480-4	chr2	32494978	32495978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39881.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	7.90083255333193	7.84281049719028	7.69571578552688	7.85802421785368	8.01815712872414	7.34466469558546	-0.0519048297174873	0.844529729595846	0.96373428957366
Merged-chr15-99074375-2	chr15	99073875	99074875	+	745.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	294.0	NR_155351	102637490.0	Mm.421289	NR_155351	ENSMUSG00000116371	Gm34284	-	predicted gene, 34284	ncRNA	6.37709795302857	6.48436804484499	6.61922798108232	6.32039317383583	6.47779524586044	6.51163925795981	-0.086111260673576	0.750094450661513	0.937525108537142
Merged-chr2-83929626-3	chr2	83929082	83930082	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027964, intron 3 of 8)	ORR1C2|LTR|ERVL-MaLR	11644.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	2.76071729992289	2.62513269791594	2.72448039406591	2.55040613077442	2.46025238260064	2.61112389181817	-0.965786438644426	0.211446400194075	1
Merged-chr8-35634112-4	chr8	35633631	35634631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-45111.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.39578720549328	4.66467774646198	4.69280344754283	4.91097313574314	4.46791565279392	4.64015430802813	0.227996229700339	0.602753794319821	0.882397657327329
Merged-chr5-64683535-3	chr5	64683039	64684039	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72840.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.41428589068191	3.11509144215116	3.35862525204859	2.94903686640041	2.96978588165891	3.32206236787261	-0.928167774560276	0.172524183168944	0.551113031062711
Merged-chr18-38380339-4	chr18	38379852	38380852	+	885.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38555.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.4000632838795	3.02422677900963	3.18479680498777	3.17388090591716	3.21138564164342	3.07659277591815	-0.23490124672722	0.722332595225793	0.92872455507539
Merged-chr6-135296539-4	chr6	135296036	135297036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13848.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	7.22656581067695	7.50075025201662	7.11960389475395	6.56323244424921	6.48019792334834	6.64029014925309	-1.14196317187845	1.0223872336935e-05	0.000408994216063309
Merged-chr11-69033167-2	chr11	69032667	69033667	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-12470.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.83499080892194	6.1142218911863	5.80007627736111	5.97489646599767	6.03233372020284	6.37569764198728	0.342703029828935	0.277963735029072	0.675292010595171
Merged-chr11-120582817-3	chr11	120582303	120583303	+	808.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1183.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	5.79639702856211	5.71984486860835	6.18321748169547	5.8282949328026	6.23110407337251	6.31861971934184	0.409972330117192	0.215654053268244	0.609048894570221
Merged-chr7-67484930-4	chr7	67484440	67485440	+	856.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112082.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.04346801438887	2.93214282789573	3.20372350659275	3.20383637449109	2.81941387023182	3.16328406487571	0.0404716433897642	0.953644309346218	0.989446911725587
Merged-chr1-40404788-4	chr1	40404271	40405271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24799.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	4.65224173325451	4.90597828910871	5.03006438207163	4.38683161503175	4.33780019142164	4.17134981390216	-1.36733221501515	0.00218854037035989	0.0330617405840424
Merged-chr8-83746177-1	chr8	83745677	83746677	+	672.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-4866.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.19511933886362	3.43273979684868	3.40124763748867	3.0920200225058	3.16405040254136	3.57357030867613	-0.236298820170461	0.717230534522368	0.926979087819795
Merged-chr4-59363241-4	chr4	59362740	59363740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75393.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.5936419867343	7.56804298613186	7.5349465827866	7.14896703753607	7.30327695031832	6.73853105551202	-0.690820990257017	0.00840690968382093	0.0892020072649033
Merged-chr7-143045513-3	chr7	143045018	143046018	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-7232.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.52279995481794	5.40628725509099	5.37744460372142	5.35290597416797	5.44131083092902	5.66486144304062	0.0858480090507162	0.798747753396614	0.952063885260145
Merged-chr11-3181489-3	chr11	3181000	3182000	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11963.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.47458619459909	6.04098672916637	5.99971494027269	4.6008633160074	4.27884658886259	6.56561650026636	-0.367266254445677	0.780534580559043	0.946078518476608
Merged-chr15-62035165-2	chr15	62034658	62035658	+	575.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2828.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.74500946708441	3.74714285516	3.89755121197215	3.7230549355436	3.5243792318123	3.96560720816326	-0.180389949892394	0.743522524570498	0.935663741087733
Merged-chr13-60712699-2	chr13	60712204	60713204	+	845.5	f0_balb.idr|f1_balb.idr	intron (NM_134062, intron 3 of 26)	MER58A|DNA|hAT-Charlie	73660.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.16532661698483	4.26050882766764	3.94803407304327	3.70069876898968	3.70566338350518	3.63841400699264	-1.42886347042706	0.00708695487839019	0.0788990288361106
Merged-chr11-77516451-2	chr11	77515951	77516951	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026185, intron 1 of 1)	intron (NM_026185, intron 1 of 1)	1334.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	2.92212564920161	2.81124859141757	3.09532556640294	3.12234391135995	2.54092736832238	2.67317145208329	-0.674254464515248	0.405262988205231	0.780049815379569
Merged-chr13-81053770-3	chr13	81053266	81054266	+	691.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	89692.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.54272080432071	3.35134485287344	3.55158361823914	3.59364049760432	3.30634082604773	3.28364012912624	-0.296952383280964	0.624495221105568	0.89205968496773
Merged-chr3-51378258-2	chr3	51377758	51378758	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	18289.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	4.20805181311029	4.0856155737962	4.0089789891669	4.22862223770219	4.36654009380994	3.86430269814342	0.210294387341628	0.678980949082541	0.913553914280182
Merged-chr18-4366507-2	chr18	4366007	4367007	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-9085.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	4.96893415348306	5.44968570597579	5.05102273467142	4.91043951864938	4.84659995677694	5.04598324400685	-0.534618459508618	0.174120808109285	0.553324327877994
Merged-chr10-45018169-4	chr10	45017587	45018587	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49127.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	6.65943942524072	6.59146078423081	6.17738965906	5.96833405156059	6.34816006971414	5.63255678525844	-0.77115418725933	0.0262672737434764	0.19243241007635
Merged-chr2-158500194-4	chr2	158499693	158500693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291138)	TTS (NM_001291138)	-2419.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	5.09050103039572	5.28398978383321	5.40031343381186	4.87473363696994	4.95334406779651	5.16246125485207	-0.550587781068705	0.139102618309677	0.498275890667337
Merged-chr1-79761740-4	chr1	79761252	79762252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	17.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	7.27598226613661	7.40015349913997	6.89437878329228	7.49462387587736	7.58648216183346	7.1518391413143	0.316925713269346	0.245171091443306	0.642381314494918
Merged-chr5-124468021-3	chr5	124467486	124468486	+	800.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	10249.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	2.67752272919822	2.815327817354	2.97860500205342	2.51778156221927	2.42437052509372	2.88089988081479	-1.14270548274998	0.163488130219754	0.537454874928895
Merged-chr2-120660668-4	chr2	120660161	120661161	+	759.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51066.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	5.5652360856152	5.58990385118547	5.83322124581789	5.85908272976927	5.74728378952907	5.74532459658311	0.231883345470954	0.460981375016882	0.814802506471053
Merged-chr11-95417501-4	chr11	95417005	95418005	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	3422.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	6.84890029175219	6.57417025115143	6.59915963040629	7.25017227206334	7.58058369622231	6.96299877754167	0.939351951277015	0.000920843096951949	0.0168881446795631
Merged-chr15-8382466-4	chr15	8381992	8382992	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	61971.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	3.24831445484312	3.02545750583882	3.00302453238776	3.15772727414933	2.88320090623456	3.30742480671495	0.0968096602353468	0.888545521880352	0.974047425492995
Merged-chr8-123375436-2	chr8	123374936	123375936	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	B1_Mus1|SINE|Alu	1725.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	3.82593730266566	3.85696892041245	3.89982230179683	4.04056242705911	3.72196878219823	4.51699050159279	0.779471569884455	0.162997077596371	0.536473264710429
Merged-chr5-74964427-3	chr5	74963940	74964940	+	922.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 4 of 4)	intron (NR_045866, intron 4 of 4)	15246.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	2.74058273693955	2.56641213890912	2.88214849428771	2.81404481488033	2.35758265253163	2.65047968689385	-0.609141533999339	0.463381848411006	0.81583286097592
Merged-chr1-36613243-1	chr1	36612743	36613743	+	581.0	f0_balb.idr	intron (NM_201365, intron 6 of 9)	ID4_|SINE|ID	-19911.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	5.37374858069941	5.46734979387774	5.39953916769316	5.38564642160156	5.17532292677465	5.87040971819247	0.155577953442724	0.678081756304453	0.913348920595872
Merged-chr5-125142206-2	chr5	125141706	125142706	+	837.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	37008.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.57081672537877	4.82503217408241	4.91429438898828	4.86539425331016	4.785901159253	5.26323842165664	0.453427499437827	0.276172169078361	0.673477736428367
Merged-chr8-121113444-4	chr8	121112932	121113932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2739.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	2.81836219201759	2.86825029861085	3.01563060475884	2.81866560570311	2.66294568634161	3.19649137681385	0.0256017775993376	0.972545944229429	0.993868590220018
Merged-chr2-170206492-1	chr2	170205992	170206992	+	646.0	f0_balb.idr	Intergenic	Intergenic	-63817.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.27331602707657	3.50142940129767	3.95384095286348	3.94046139704498	4.09035708312253	4.11890023283741	0.285691518220097	0.622023987567155	0.890937721901588
Merged-chr1-79776083-4	chr1	79775598	79776598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081210)	promoter-TSS (NM_001081210)	80.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	5.30997496391149	5.72067362613918	5.46323489302038	5.75408543744382	5.76082328681299	5.748940174349	0.443795600024745	0.181729908536033	0.564272790113674
Merged-chr7-100964370-4	chr7	100963877	100964877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-11.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	7.0409800545337	7.0451689182826	6.9143300559905	6.56070004803769	6.76935611607328	6.74970135772176	-0.476623315151621	0.0574198927654301	0.309238287485714
Merged-chr14-63137562-2	chr14	63137062	63138062	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 5 of 9)	Tigger7|DNA|TcMar-Tigger	15100.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.95221806544684	4.06103799949192	4.75262978041684	4.26470657743636	4.09025152695426	4.53568861425024	0.0175036178435766	0.974310207609606	0.994276686350905
Merged-chr4-141507077-4	chr4	141506590	141507590	+	817.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	31507.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	7.31558373438607	7.04770334126435	6.54326395585838	7.27785557414232	7.02728897913567	6.87705831760542	0.0835706013825754	0.784069664356724	0.947434735607995
Merged-chr1-120251387-1	chr1	120250887	120251887	+	701.0	f0_balb.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	13893.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	2.86218277487444	2.96870193308132	3.11713634611104	2.81515327167091	2.76754622583896	3.18797603229309	-0.249884970309419	0.72864044562373	0.930478966998914
Merged-chr9-94698234-3	chr9	94697685	94698685	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	28293.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.87011097111403	5.68381942668305	6.23128915213133	5.73230025881101	5.7418224766743	5.96503198370822	-0.222185656215942	0.501622205484044	0.835833270717604
Merged-chr12-111930932-2	chr12	111930432	111931432	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13550.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	5.60667115209623	5.42844494023375	5.72335581375458	5.52119319258049	5.61437312843419	5.99136331433175	0.239844092250275	0.481775739932843	0.825208669475694
Merged-chr13-24338457-4	chr13	24337943	24338943	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	MTEa|LTR|ERVL-MaLR	11039.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.29456294097568	5.44137878726108	5.50612048032889	5.62382313001081	5.96150471528608	5.73268124549827	0.702720782893678	0.0334699291725761	0.223369094208511
Merged-chr2-121413125-3	chr2	121412617	121413617	+	826.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	675.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	7.07820175034786	7.1789850976996	7.06548929483082	7.12789890572288	7.19633885630119	7.03023155515322	0.0213269851967124	0.928300535736407	0.983802612059568
Merged-chr10-58403665-1	chr10	58403165	58404165	+	546.0	f1_balb.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	9292.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	3.18736345392489	2.98531134903074	3.14805454452878	2.90656547117318	3.13391551875313	3.43371912593002	0.263962938850084	0.701045407753705	0.921118403997763
Merged-chr10-99332814-4	chr10	99332326	99333326	+	950.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69595.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.2637320258156	3.50801905022907	3.61170870047341	3.14920104670647	3.58533507576566	3.57973400783743	-0.040519549013557	0.949324979751183	0.98818345820577
Merged-chr2-130274366-4	chr2	130273846	130274846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024193)	promoter-TSS (NM_024193)	-66.0	NM_024193	67134.0	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	7.52016461236724	8.17272155477806	7.62475782299367	7.56736168361136	7.61851271772704	7.34675660008204	-0.422497833277335	0.126586901034513	0.475549804679232
Merged-chr2-3641224-4	chr2	3640703	3641703	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72255.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.02509769165154	3.54383723692514	3.52073968034997	3.44014176002904	3.32212681924969	3.35818914550373	-1.27307458824547	0.0387971458929409	0.244248537146086
Merged-chr9-85360768-2	chr9	85360268	85361268	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33618.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.94038079989566	4.34267253331993	4.00827727503805	3.91126892966983	3.90287763395957	3.81976648670219	-0.699780548967578	0.176448659827619	0.556740450083336
Merged-chr17-5612688-2	chr17	5612188	5613188	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	120088.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.09632550478262	3.10193154396935	3.36554544566739	3.05010544652015	2.89972389894978	3.27732291994689	-0.484182506645701	0.474265174577707	0.821343873734808
Merged-chr13-97239713-4	chr13	97239206	97240206	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	3.58038791048532	3.66960083378591	4.09474364269194	3.50476200064205	3.66847309140951	3.59409961229734	-0.665233513096877	0.25262813660614	0.649949738121886
Merged-chr6-129234696-3	chr6	129234228	129235228	+	797.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3317.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	6.7188056020695	6.31301903105942	6.83795041540356	6.96267972146389	6.82711973127724	7.09344325947443	0.507602330953695	0.0723737867460272	0.353325395890837
Merged-chr7-63904776-2	chr7	63904276	63905276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-12081.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.35316899145395	7.17283495902713	7.11080655153149	7.2849829850773	7.40279856035206	7.10327042296629	0.0847948966767024	0.729349084933062	0.930607066982201
Merged-chr5-65866399-2	chr5	65865899	65866899	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	2830.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.70808618767733	6.83958561656721	6.29486726894173	6.365158001066	6.63785565098411	6.43410610239272	-0.251187274051504	0.394159596690181	0.77206906441863
Merged-chr5-66279821-4	chr5	66279325	66280325	+	787.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 7 of 12)	L1MEg|LINE|L1	18984.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	3.20273852157485	3.32285790858912	3.14669509120093	3.31253262810361	3.6732102952785	3.50987335328007	1.08847317294107	0.083132790803812	0.381505377849687
Merged-chr12-40459108-4	chr12	40458615	40459615	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13062.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.66479595369805	4.56964829318751	4.51548327402339	4.40397473684606	4.65907238727417	4.81591512920077	0.106800688188882	0.802476154414256	0.953198534492307
Merged-chr5-21189210-4	chr5	21188705	21189705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2938.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.71726411206062	7.76230656237138	7.56362454796975	7.52960227853492	7.72993374536594	7.28248894632065	-0.217793803617736	0.372354050731847	0.756158438358361
Merged-chr6-116193097-4	chr6	116192638	116193638	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	CpG	236.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	7.35390351337561	7.11350819221776	7.14315752929478	7.34527124457149	7.10685624707265	6.66423154216699	-0.197153285279401	0.486048118453745	0.827641640456729
Merged-chr7-100501845-2	chr7	100501380	100502380	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	8522.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.85815885886143	5.84177023273237	6.51918508044413	6.09736086232673	6.38361567861427	5.95458984028074	0.109118850697016	0.755679157992291	0.939400440743942
Merged-chr11-121091179-4	chr11	121090654	121091654	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10015.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	5.07974518121786	4.74499847789894	4.96077012401616	5.43657265070967	5.0624050476217	5.16612482866866	0.620003006043809	0.109002938072613	0.44106937375527
Merged-chr6-129471579-4	chr6	129471069	129472069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1210.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	7.57003425120887	7.47391458865916	7.45848172665142	7.7129836127115	8.00894089011202	7.44034460323594	0.361724017733221	0.152030070436896	0.519917722284871
Merged-chr6-124662936-4	chr6	124662413	124663413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-191.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	7.74966713525659	7.59238812163759	7.32857848096734	7.72516513782252	7.84044912307796	7.26478380011539	0.0991249437832926	0.713790962717556	0.925599802465018
Merged-chr5-122637963-3	chr5	122637441	122638441	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5970.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.96171681809464	4.53411786361692	3.98001043441402	3.67350033274836	3.32392305448411	3.64138104288759	-3.26195397532909	4.06308372904757e-07	2.45341851180399e-05
Merged-chr16-93820403-2	chr16	93819903	93820903	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11718.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	4.14802488203301	3.94485496646916	3.81566834879779	4.14528869223569	4.02020101931894	3.93946995888801	0.165915150909779	0.743898017965618	0.935814517574594
Merged-chr11-70230528-4	chr11	70230024	70231024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-726.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	3.84632923020793	3.6404653025908	3.48984665363819	3.74065200211595	3.51517873307018	3.61894504587777	-0.163703090832193	0.774042862246844	0.94425470583833
Merged-chr10-93311016-3	chr10	93310513	93311513	+	999.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013508, exon 1 of 5)	5' UTR (NM_013508, exon 1 of 5)	146.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.20511001354371	4.93333298642039	5.46501137716255	4.38212111166809	4.23374188085208	4.71696232914084	-1.76882997478416	6.53344305009956e-05	0.00197702270086323
Merged-chr15-12373743-4	chr15	12373244	12374244	+	991.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52248.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	3.38591052171267	3.21883226428491	3.50905004211316	3.05102206367112	3.09990940671038	3.25959774497406	-0.987201395948493	0.124253906051071	0.471601469447498
Merged-chr10-86887043-4	chr10	86886519	86887519	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108014.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	7.27675363292845	7.09078908770104	6.9132436347417	7.01135753710396	7.4182460844449	7.17349472277195	0.164327384926437	0.53348554341769	0.852484319020423
Merged-chr1-91096696-4	chr1	91096207	91097207	+	969.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	43263.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.6529289792148	4.64697067043767	5.19453547250099	4.56073338229188	4.59168715538937	4.65337092452111	-0.565652322197772	0.195057252295532	0.582787221560878
Merged-chr3-144696734-4	chr3	144696245	144697245	+	913.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	23590.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	7.31401317007613	7.33861295274359	7.25072376845545	7.23232533193736	7.53433598956027	7.08159804044238	0.00735555893367798	0.97665572483466	0.994723308989508
Merged-chr15-96699771-4	chr15	96699270	96700270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-42.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	8.09694712576753	8.07545159104457	7.49955303638007	7.89671696351241	7.68272625198746	7.52456542206036	-0.306594168192049	0.253442373854143	0.650876272811414
Merged-chr14-8095563-4	chr14	8095069	8096069	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2642.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	6.81525139150686	6.89808449989652	7.01980526391661	7.11445365878323	7.62137713767143	7.10412639474226	0.610710759994999	0.0257337325113665	0.190181402860448
Merged-chr10-17408045-4	chr10	17407543	17408543	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-312261.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.97335154185266	3.04958751724645	3.33780754022993	3.0249808787111	3.01264703543855	3.19348523895672	-0.206721417129438	0.757857147907364	0.939957028913442
Merged-chr2-19049768-6	chr2	19049205	19050205	+	909.865051	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51386.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	5.63388437529186	5.46865335679221	5.19201727262397	5.84549631865456	5.90493091617841	5.72433345632311	0.690056739415509	0.0400636279491405	0.24915702786975
Merged-chr5-21738112-2	chr5	21737612	21738612	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028431, intron 1 of 12)	(CAGA)n|Simple_repeat|Simple_repeat	952.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	3.4055486799825	3.12174594105496	3.45897128112769	3.10017569999773	3.39599893182909	3.42343238068169	-0.0734186403487957	0.909217647308404	0.979384717565381
Merged-chr5-120506671-2	chr5	120506171	120507171	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3048.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	2.74151345055478	2.63612148974523	2.9275699382636	2.87138958865092	2.8329641794414	2.75784080807672	0.283516922629986	0.697204746564952	0.919859963548202
Merged-chr10-128177562-2	chr10	128177062	128178062	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-994.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	3.78326540253928	3.64381916619469	3.66074691061189	3.34563787851983	3.53819313602737	3.5161745609124	-0.810571083563158	0.156660230261653	0.527492086420024
Merged-chr5-38039968-4	chr5	38039457	38040457	+	886.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	727.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	5.72277975066389	5.79122073828607	5.15357150998392	5.53769393041968	5.38327385117432	5.3256193773034	-0.341910673288935	0.353843770490033	0.740974769219446
Merged-chr11-117810147-4	chr11	117809640	117810640	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009304, intron 1 of 3)	CpG	473.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	7.59636914626742	7.76829594179397	7.87484841646581	7.74692561530745	7.67856638879578	7.96821811416459	0.0731133138187585	0.752407686567137	0.938231908402445
Merged-chr15-58980782-2	chr15	58980282	58981282	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46972.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	5.69969922200226	5.99933431824607	5.49224344583795	5.23969333530746	5.24965807648134	5.04507642327817	-1.09093726663204	0.00233715685229733	0.0347889351280781
Merged-chr12-52383141-4	chr12	52382624	52383624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGTG)n|Simple_repeat|Simple_repeat	97485.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.72574871717676	3.68212650241735	3.44024674951892	4.07793097629226	3.86683913372841	3.63536355278871	0.807474175083183	0.15958226674716	0.531877190382303
Merged-chr18-34416080-4	chr18	34415580	34416580	+	924.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016927, intron 4 of 14)	intron (NM_016927, intron 4 of 14)	6657.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	3.34057251046845	3.5383991594953	3.37085078610535	3.2564412608413	3.21544793570997	3.32939799405164	-0.629555182123726	0.300912854744504	0.697653874358754
Merged-chr11-62574418-3	chr11	62573932	62574932	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011706)	promoter-TSS (NM_011706)	-54.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	4.66455487972187	5.04986917282492	5.48786130658656	5.23423728003993	5.24533930535902	5.17080698298716	0.244251775632567	0.557538664539606	0.864250916545731
Merged-chr2-59200821-2	chr2	59200321	59201321	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	39971.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.20126765653083	5.07923583250899	5.24005785879685	5.4224946461479	5.72792804661718	5.2715683474535	0.654352670513437	0.0680888172194686	0.341417536171971
Merged-chr17-80801511-4	chr17	80801004	80802004	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73479.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	3.85516680412458	3.85869148426614	3.79232788721106	4.12995427267531	3.96825477946334	4.24471633861501	0.822646670743521	0.102757498431817	0.427448179248844
Merged-chr9-75442711-1	chr9	75442211	75443211	+	660.0	f1_balb.idr	intron (NM_001039522, intron 1 of 11)	intron (NM_001039522, intron 1 of 11)	1187.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	2.61311158396894	2.5739620168216	2.47743806586148	2.77807493580399	2.60790299422476	2.74465149830057	0.850316102060459	0.270268141180127	1
Merged-chr11-79522162-4	chr11	79521676	79522676	+	785.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	1586.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	6.24293006885641	6.44922987519958	6.16069868389529	6.80895864265445	7.00368523640392	6.63243694612186	0.853163985193008	0.00228550644136667	0.0342282973313963
Merged-chr1-138267879-4	chr1	138267386	138268386	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5852.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.71022187415421	5.9157578394152	5.59661190184831	5.68002735513047	5.99017439066995	6.09958432896778	0.313151479526306	0.336143933188475	0.726188191731921
Merged-chr11-50130911-4	chr11	50130406	50131406	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-454.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	6.62510666011724	6.61565460210477	6.32558983423541	6.59400674827822	6.81125607367217	6.19027920078346	0.0563456802229473	0.852883304334642	0.965546660322955
Merged-chr13-34064079-4	chr13	34063502	34064502	+	854.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026512, exon 6 of 7)	exon (NM_026512, exon 6 of 7)	14006.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	3.1370566974986	3.1218790795816	3.14354956122538	2.88682125349833	2.59177121401108	2.65257455708075	-2.22998469402168	0.00482309103108976	0.0597379813210654
Merged-chr2-75775897-4	chr2	75775395	75776395	+	958.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56282.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.68796326753752	6.34546412777066	6.45693345597001	6.77588629278461	6.96981496229698	6.98488412416707	0.63731938563355	0.0177830673052414	0.14945367057597
Merged-chr12-108630579-2	chr12	108630079	108631079	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-5174.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	5.59783000411676	5.68702210059886	5.74033014920717	5.5186260154639	5.79976607628035	5.75112706420487	0.0464874879346537	0.884140475931638	0.973466734537782
Merged-chr7-132931654-2	chr7	132931154	132932154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207302, intron 1 of 9)	CpG	512.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	8.57971493653458	8.4857004301927	8.0907736299046	8.40626694248892	8.32992084385374	8.47360170382484	-0.00928997621592622	0.967963527797121	0.992633833139547
Merged-chr18-75306172-2	chr18	75305672	75306672	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8843.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.11534958316227	3.19470477200784	3.01229184219736	3.08276218871924	2.91991031410745	3.36822357075217	0.0730616146119606	0.914703395672811	0.980912729144991
Merged-chr15-97831742-6	chr15	97831346	97832346	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204276)	promoter-TSS (NM_001204276)	-79.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.3611324596991	3.96567989590342	4.73186927367749	4.05103730384954	3.42060406863253	3.72907964058153	-1.83483309887623	0.00274026790726267	0.039285356999916
Merged-chr11-82566268-4	chr11	82565781	82566781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67072.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	6.63142477297946	6.99506890059976	7.1469662560433	6.97713915552873	7.41462551061146	7.42283010105829	0.530096198557538	0.0619643072555117	0.323230697232844
Merged-chr19-11581423-2	chr19	11580946	11581946	+	671.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23358.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	3.05326746410927	3.10740205181222	3.12429742702393	3.06125133928334	2.83379761220083	3.02040413668029	-0.571637225115	0.396566695674726	0.773681632208737
Merged-chr13-95032707-2	chr13	95032207	95033207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 17 of 19)	intron (NM_172263, intron 17 of 19)	56363.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	6.92820335524541	7.26557565587558	6.77084285627909	6.80526945170575	7.15841415084316	6.41018403474843	-0.259870562908692	0.410791157094729	0.783635895772505
Merged-chr17-48825695-4	chr17	48825199	48826199	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-106883.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	4.01402061362559	3.58903711729351	3.82854130660002	3.312065547911	3.59880888205437	3.69700939531321	-0.944251712586413	0.112988015217854	0.4491451734305
Merged-chr5-151070006-4	chr5	151069514	151070514	+	949.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359985, intron 3 of 12)	intron (NM_001359985, intron 3 of 12)	117407.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	3.38215909878238	3.10672176612397	3.39213335599399	3.49119874092839	3.4634484581564	3.81661853674596	1.11635046786006	0.0723039009600361	0.353157446871531
Merged-chr13-60614494-2	chr13	60613994	60614994	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	12283.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.13270815230417	3.55112883796906	3.47199034666539	3.1551050052504	3.02847131493486	3.27103239697301	-1.02158693106255	0.120581488808175	0.464399190962767
Merged-chr8-122576862-4	chr8	122576368	122577368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009698)	promoter-TSS (NM_009698)	39.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	5.88189891554859	5.97686030465762	5.98513907169531	5.74528482656775	5.80363443783579	6.0010203647131	-0.177034093012771	0.556247083041897	0.86357390983939
Merged-chr9-111145720-4	chr9	111145196	111146196	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	27585.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	5.5687799954112	5.63052610512628	5.36753282471361	5.20682900934715	5.29646098098557	5.23683078105326	-0.557905489406993	0.101011234336432	0.423857995444916
Merged-chr16-3238415-2	chr16	3237915	3238915	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TACTG)n|Simple_repeat|Simple_repeat	-353983.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.34433559053362	2.31119236600778	2.80830529687251	2.22975242613334	2.30530704994125	2.65275412901965	-0.581422352019759	0.518330224670472	1
Merged-chr3-61426096-4	chr3	61425590	61426590	+	918.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61583.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.35492426155675	3.52653786583765	3.60979950176539	3.76610992620349	3.44855138598654	3.78070250725451	0.600518513289553	0.302643255968025	0.699276353509593
Merged-chr7-98711213-1	chr7	98710713	98711713	+	875.0	f0_balb.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	7966.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	6.48973595249681	6.3796334801276	5.99991961733169	6.03396244300572	6.28640958874014	6.21937412720106	-0.219214163606186	0.469371408833779	0.818977178978635
Merged-chr15-55556904-2	chr15	55556404	55557404	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	408.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	5.03115564913178	4.74145831079181	4.65226599928209	5.14073288931792	4.87612563603714	4.92025039473672	0.344045837087594	0.393296469514156	0.771515439837752
Merged-chr17-56612744-2	chr17	56612244	56613244	+	828.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	-651.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	4.0306965347012	4.12388033889959	3.71943231664396	3.84961741901912	3.96945946266584	4.00113686370792	-0.115051442865596	0.825652268932648	0.958871344165038
Merged-chr11-51818846-2	chr11	51818346	51819346	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	38635.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.63663098886031	5.81112899960044	5.79209127408617	5.59675267342227	5.79455489522373	5.49715248094065	-0.183076117800133	0.570155758889671	0.869072933274727
Merged-chr9-85322126-2	chr9	85321626	85322626	+	719.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001160378, exon 3 of 3)	3' UTR (NM_001160378, exon 3 of 3)	4998.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.62848970831573	3.64096853877331	3.81065148744881	4.01086317549933	3.46521432868846	3.72745849541445	0.198471289679079	0.730079032721251	0.930739189426372
Merged-chr4-119124959-4	chr4	119124473	119125473	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	MIR3|SINE|MIR	16228.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	6.22911435445194	6.40153722716393	5.95514440132196	7.20475085818879	7.18764526723816	7.08952210620931	1.47471847204236	1.01472480435877e-07	7.23129232366322e-06
Merged-chr16-57569183-4	chr16	57568687	57569687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	MIR|SINE|MIR	19945.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.37117031712731	5.81402424585792	5.88473873128618	5.99603708468753	6.23406005554324	5.92159148417821	0.0170499285512372	0.959142222603626	0.990174309444982
Merged-chr16-31933795-8	chr16	31933266	31934266	+	984.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-85.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	8.20291137979973	8.40418474025373	8.0690620404218	8.26598330069792	8.45832943274478	8.26078522945103	0.135919061442442	0.539939705702256	0.856214800885678
Merged-chr6-38900317-4	chr6	38899835	38900835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18651.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.03188364096461	6.98284236079091	6.63774955737593	6.97646196677503	7.27127238896099	6.93571523076167	0.263013794615357	0.330613898236222	0.722003862374483
Merged-chr1-138248813-2	chr1	138248313	138249313	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-24925.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	2.94125938033952	2.90164340481744	3.3812835348497	3.27406373749714	3.23682238079716	3.17811002911346	0.625802815611444	0.361132445946978	0.747099986632758
Merged-chr5-88765003-4	chr5	88764517	88765517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	4.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	7.24692321288922	7.26229503216605	7.16923796278028	7.36440862922805	7.50086376928415	7.23907487907631	0.223020300970632	0.341547680903655	0.730894271945484
Merged-chr5-33782840-4	chr5	33782344	33783344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019694)	promoter-TSS (NM_019694)	-140.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	6.664884293893	6.55835735686749	6.77839405630949	6.78365385089612	6.34656603641889	6.47546828900913	-0.188594979356948	0.501521266117585	0.835798464041178
Merged-chr5-74531022-2	chr5	74530539	74531539	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178672, exon 1 of 5)	exon (NM_178672, exon 1 of 5)	703.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	4.10004878361198	4.29325321425229	3.90725673722756	4.02662352157238	3.98359734496647	4.02902824301742	-0.312607748335796	0.53021533190465	0.851070276054813
Merged-chr10-10553147-4	chr10	10552653	10553653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	5054.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	5.48120167378109	5.50281570269343	5.47657816087685	5.79697152335373	5.97369097231493	5.6833800511342	0.637482152982865	0.0451487788464665	0.268108734674335
Merged-chr19-17326725-2	chr19	17326226	17327226	+	653.5	f0_balb.idr|f1_c57bl6.idr	3' UTR (NM_001136484, exon 3 of 3)	3' UTR (NM_001136484, exon 3 of 3)	12779.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.48209462974274	3.63336485744127	3.88660341961527	3.96330754541509	4.03375269636389	3.90696424780443	0.981079350250515	0.0695747095483878	0.345200567201318
Merged-chr1-171661883-4	chr1	171661303	171662303	+	868.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8766.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	4.16636341279468	3.75726369405505	3.73297761519126	4.24353928391018	4.01875879949237	4.42272787295395	0.9294163483861	0.0849069698865104	0.38583032878143
Merged-chr1-144299723-2	chr1	144299223	144300223	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50619.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.63768079776126	5.94245154442046	5.65350249802144	5.50955453601266	5.47072195273828	5.7674899656618	-0.331558007342923	0.317057982670546	0.711002846571911
Merged-chr15-58877075-2	chr15	58876575	58877575	+	767.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026642)	TTS (NM_026642)	4426.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	6.83223596118945	7.25416965753918	6.77183616791917	6.52436696886517	6.92925964482631	6.56076475385692	-0.439287739173243	0.136336608110736	0.493337529361954
Merged-chr13-120299480-3	chr13	120298961	120299961	+	839.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-931.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	4.45047155386939	4.38263054765438	4.63246142702307	4.39105785025142	4.46210865623276	4.87535996496178	0.238509668448833	0.594980846031277	0.87924603206665
Merged-chr12-79141637-4	chr12	79141161	79142161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	MMAR1|DNA|TcMar-Mariner	10873.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	8.0831893610863	8.0874896986983	7.66041511961954	7.2493064396476	7.59633360839489	7.33120602908714	-0.805631578804212	0.00158990550948416	0.0258788845135285
Merged-chr9-111273515-2	chr9	111273031	111274031	+	818.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_175266, exon 1 of 1)	exon (NM_175266, exon 1 of 1)	1686.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	4.44697509657019	4.5896991814741	4.506266616833	4.63968335013152	4.51769809171003	4.44340842946723	0.0539428027038006	0.89872469564856	0.976432549466174
Merged-chr10-8007448-4	chr10	8006949	8007949	+	986.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51326.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.52516328078319	4.47779083815257	4.11377104123083	4.2356242819462	4.13549105792715	4.18405284865849	-0.566878329102524	0.229446692534133	0.625018018476401
Merged-chr9-118811139-4	chr9	118810644	118811644	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	99452.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.01766367015692	3.8951564500842	3.94256840812914	3.4733980906445	3.49884765045115	3.76584897147785	-1.26788545333584	0.0212270139681084	0.167927113354094
Merged-chr16-14362172-5	chr16	14361659	14362659	+	988.840027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	601.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	7.3251815731736	7.33360645430674	7.44818005206601	7.39725222434068	7.66085590002578	7.22525540379863	0.123223651637338	0.616936267098639	0.888607350961806
Merged-chr9-36766185-1	chr9	36765685	36766685	+	595.0	f1_balb.idr	intron (NM_008408, intron 1 of 17)	intron (NM_008408, intron 1 of 17)	1393.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	3.50578032769126	3.64257864865298	3.83946055919976	3.75026558780822	3.82649127760504	3.95517063197198	0.598124144990909	0.270984574847473	0.668210185630291
Merged-chr11-34011654-2	chr11	34011154	34012154	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18461.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	7.54348225804194	7.24839254620439	7.4809659727302	7.4414902465187	7.42882742369871	7.4775803780771	0.0291166105847952	0.900747408951923	0.976979808706155
Merged-chr16-48833840-4	chr16	48833345	48834345	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8707.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	3.6868066077616	3.52158117933495	3.46397830728823	3.61103534740938	3.61710960127755	3.74997200626431	0.319254896972897	0.569128457560727	0.8688875602138
Merged-chr1-7399042-2	chr1	7398542	7399542	+	729.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310122.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	2.68359136747491	2.67377928928106	2.80970596876955	2.63135325378983	2.65029405438749	2.88184945250957	0.000681677443683344	0.99926523905614	0.999910586345539
Merged-chr2-148407378-6	chr2	148406856	148407856	+	942.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	832.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	4.98869401740716	4.88365387201888	5.59705321237528	4.90348733084392	4.5070755354251	5.04891650099346	-0.759451080339923	0.0912524503706958	0.401997770565695
Merged-chr4-45519779-2	chr4	45519279	45520279	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	L2a|LINE|L2	11049.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	4.04688800061749	4.05073487528361	4.11434102160726	3.92518224022073	3.91593559104971	3.99419762104847	-0.378074527567034	0.438240881548369	0.800452935582411
Merged-chr1-52158940-4	chr1	52158440	52159440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 24 of 24)	intron (NM_001205313, intron 24 of 24)	39318.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	3.76677359050783	3.70181931455745	3.80883410468727	4.12331076655911	4.05274456209557	4.07660775403478	1.01343895460472	0.0440191125429646	0.263942566584918
Merged-chr4-105468717-1	chr4	105468217	105469217	+	673.0	f1_balb.idr	Intergenic	Intergenic	311370.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.06838599405941	2.98677479321791	3.10323206522146	2.85944792824553	2.82322635393425	2.81738129873063	-1.07934066836625	0.12126478400545	0.465694380741473
Merged-chr14-54913101-1	chr14	54912601	54913601	+	812.0	f0_balb.idr	promoter-TSS (NM_001360406)	promoter-TSS (NM_001360406)	31.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	3.85115290084574	4.14819863170101	4.34792485418341	4.12079528949791	3.93129829647469	4.20330414084307	-0.115565202072628	0.820682473263296	0.957787105141764
Merged-chr2-68886295-4	chr2	68885796	68886796	+	890.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	RMER10B|LTR|ERVL	24855.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.90905695424571	3.88431208672628	4.09262918784771	3.86836709592592	4.08656275668717	4.02145667745065	0.120075492278707	0.810816429836345	0.955096593239846
Merged-chr7-141011394-1	chr7	141010894	141011894	+	540.0	f1_balb.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	-650.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	5.13070331305361	5.44296242969344	5.61970207999843	5.18532392709593	5.07943926441191	5.60536348408064	-0.214092859077442	0.578542104051039	0.872437129840066
Merged-chr9-59537854-4	chr9	59537331	59538331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1709.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	4.71532740526712	4.97805925210179	4.84932840072786	4.49403330996181	4.48792117093795	5.04898275561269	-0.372850098190723	0.395220613649094	0.772579826044138
Merged-chr2-30473668-2	chr2	30473168	30474168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	531.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	3.9465631230488	3.63094521213627	3.81153353963707	3.81911311672063	3.83579724518108	4.07186303550393	0.329566042726248	0.535754704280963	0.853668337370661
Merged-chr3-95142000-3	chr3	95141496	95142496	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	364.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	6.66204847848574	6.90175983971077	6.69657933671285	7.00183361684946	7.23998223035342	6.92447390955778	0.474390663177492	0.068272251483976	0.341765400583571
Merged-chr16-3894931-4	chr16	3894450	3895450	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153801)	TTS (NR_153801)	10331.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	6.15363094391872	6.42946013407104	6.56488747158994	6.54737133205289	6.75583869845157	6.97270056113289	0.604482519454018	0.0361857534034561	0.233986957506588
Merged-chr11-83704970-4	chr11	83704476	83705476	+	769.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	920.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	7.24604496037044	7.6431157746423	7.54593956552041	7.52185439237519	7.92759137864104	7.5538508341874	0.289886441308105	0.263923999031073	0.661879105198449
Merged-chr18-80468125-4	chr18	80467619	80468619	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1548.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.41208724041873	5.27359681280896	5.00735629278652	5.04312426162753	5.15691565287826	5.0362063893218	-0.345085543227336	0.350747443502534	0.738729675221071
Merged-chr4-102495682-4	chr4	102495161	102496161	+	798.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-74399.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.10479138035038	2.96828102225948	3.03268507847213	3.04259457176263	3.12586984545039	3.10492028291545	0.251668321372447	0.700870431482265	0.921028048562707
Merged-chr18-67610499-1	chr18	67609999	67610999	+	562.0	f0_c57.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	30856.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	4.84745618463894	4.30140502399711	4.30864938532567	4.5667045699793	3.88012238968698	4.23529404037033	-0.662276649411025	0.214675685886024	0.60785052509663
Merged-chr11-49846716-4	chr11	49846205	49847205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-46.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	7.13470382378571	7.54087229518325	7.28390843460142	7.7113448354947	7.72209361019832	7.73919365628833	0.567475902235145	0.0183466756396693	0.152781663702878
Merged-chr15-100737861-4	chr15	100737380	100738380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5143.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	6.42905248237219	5.93709840442775	6.70933196512843	6.40942801670065	6.31317435818666	6.33324870012759	-0.0583742523354027	0.856587515934141	0.966557736209816
Merged-chr1-134066769-2	chr1	134066269	134067269	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12386.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.81254415169672	4.66126138241853	5.26140463958337	4.68088561026961	4.76139799648609	5.08534942878787	-0.174017104626391	0.687021536319928	0.916965854132552
Merged-chr10-87690993-4	chr10	87690433	87691433	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167332.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.11908003930227	2.81282447252076	2.7356825994757	3.06586996319128	2.89514013425039	3.00253855800837	0.388949378306086	0.593405093923277	0.878461334527753
Merged-chr10-99261882-5	chr10	99261403	99262403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1328.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.50332232097725	8.86818085750561	8.55291200804073	8.61762880648686	8.8361512357312	8.45442016801724	-0.00588714752254136	0.979802621081489	0.995332945386782
Merged-chr6-130092608-3	chr6	130092105	130093105	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013793, intron 3 of 7)	intron (NM_013793, intron 3 of 7)	-25334.0	NM_001252577	16635.0	Mm.333431	NM_010649	ENSMUSG00000079852	Klra4	Chok|Klra32|Klra33|Ly-49d|Ly49d|ly49r<129>	killer cell lectin-like receptor, subfamily A, member 4	protein-coding	2.6288644028438	2.60532083035821	2.78750039317639	3.47762013331079	3.56459790313205	3.63229494818132	6.97676317970581	6.06883185855127e-08	4.56578084345691e-06
Merged-chr5-86191455-1	chr5	86190955	86191955	+	624.0	f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6446.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	3.05964405174035	2.7472208010468	2.85178657871847	3.25586266038592	3.45728496464419	3.12111488159268	1.79459875702133	0.0138466914196675	0.12582237628565
Merged-chr12-31654886-4	chr12	31654389	31655389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028002)	promoter-TSS (NM_028002)	20.0	NM_001163126	238123.0	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	7.7974920022027	8.2329640778139	7.74103648780637	8.05551654256377	7.84385395744546	7.6683423452676	-0.114999676225431	0.655714570909163	0.904343663112686
Merged-chr18-76932898-2	chr18	76932398	76933398	+	832.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	2871.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	3.7538629274955	3.52972302626329	3.7539927390039	3.47269200743795	3.61809819517511	4.095587348343	0.220878132729431	0.708382472227243	0.923684652799343
Merged-chr13-56615424-4	chr13	56614893	56615893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5807.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.94125519300028	5.79648951638545	6.04958076004984	5.83227046382789	5.85373538746862	6.19178273116278	0.0567792096790121	0.855268312420587	0.966123042475177
Merged-chr15-58418270-4	chr15	58417748	58418748	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	2780.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	4.00881165926308	4.10998322425714	4.11143984887064	4.04368557640161	4.39813079687463	4.13263429991009	0.376618113281745	0.438309925515823	0.800485853918719
Merged-chr3-95263417-4	chr3	95262918	95263918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 4 of 7)	intron (NM_173347, intron 4 of 7)	-12225.0	NM_134253	171388.0	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	5.70737804126494	5.60891525872608	5.73229049427842	5.68096846672148	5.57126570728763	6.00334344480393	0.128827989556184	0.693242099231301	0.918849644494702
Merged-chr10-117412840-4	chr10	117412348	117413348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	34587.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.99288623132999	6.73338124645859	6.54966559167769	6.78327389821947	7.06421277311607	6.37432095874313	0.0113783169770474	0.970620463076798	0.99351865396095
Merged-chr5-24101062-4	chr5	24100584	24101584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161800, intron 1 of 9)	CpG	494.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	6.77140802416453	6.59654525177579	6.16082167118934	6.56172446600045	6.16970194036849	6.38972765103516	-0.268080926490418	0.388521031319122	0.768380148171071
Merged-chr5-35104313-2	chr5	35103813	35104813	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	1384.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	2.81073443962098	3.33210560834409	3.04547355996549	3.13971631192789	2.86238372177126	3.28996285232826	0.0969708251279179	0.894965914341158	0.97562294541392
Merged-chr19-4100947-3	chr19	4100504	4101504	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008851, exon 1 of 23)	5' UTR (NM_008851, exon 1 of 23)	382.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	3.55655776202214	3.17988942025976	3.07428315922776	3.42589759176492	3.3387729990994	3.55676150724436	0.559889783027647	0.395479102327901	0.772842311340033
Merged-chr8-34964375-3	chr8	34963895	34964895	+	575.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	1295.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.87069368760137	4.97352429863887	4.9825802032145	5.24875213254342	4.87213996640952	4.97575719898575	0.212649552644356	0.580224989263568	0.87276422265422
Merged-chr9-20996712-2	chr9	20996212	20997212	+	773.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6025.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	4.9657480321029	4.9728303980122	5.28533240602508	5.02272061161437	5.15923977216828	5.02513289795638	0.00893933066377147	0.980968005282952	0.995657460731624
Merged-chr8-120437876-2	chr8	120437376	120438376	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50990.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.59227945104018	3.73204221575368	3.50509526711303	4.21253581205464	3.78398937108331	3.63909113628979	0.928817989966697	0.109680207875576	0.442614614525969
Merged-chr3-9713716-4	chr3	9713221	9714221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-103636.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.1887750984677	4.48870391663665	4.2583235744921	4.31093302548585	4.38874082433496	4.45815873454716	0.160350994369603	0.723991847069836	0.929178878081464
Merged-chr5-121386535-5	chr5	121386047	121387047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-932.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	8.00643876414814	7.76655353154365	7.4758414773293	7.63810346207089	8.04703100601258	7.60472342829859	0.0179868878713173	0.946462611949207	0.988002063841177
Merged-chr11-74638597-4	chr11	74638084	74639084	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-10911.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	6.64691871049629	6.45021673023901	6.779839729723	6.47789337850411	6.30325738249747	6.53961768643292	-0.303803912607464	0.269113260978294	0.666261305587249
Merged-chr1-75168988-4	chr1	75168497	75169497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026846, intron 1 of 8)	intron (NM_026846, intron 1 of 8)	262.0	NM_026846	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	6.97575397352497	7.1706342920534	7.24342498270992	7.07524059124541	6.98298085588006	6.84327068470269	-0.236511258034039	0.341996268103496	0.731142095278512
Merged-chr19-5912863-4	chr19	5912357	5913357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	14.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	7.31245940013961	7.24315510692212	7.09419608104185	7.25689970341606	7.68392062918526	7.21583606339885	0.281898819231311	0.280765834313884	0.678846264691369
Merged-chr11-120358077-4	chr11	120357570	120358570	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3464.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	3.31817613739267	3.25495727923244	3.36503820782767	3.14449441695773	2.82366139512818	3.27225838631226	-0.972738628856203	0.156233776038965	0.526547286309362
Merged-chr10-7667476-4	chr10	7666970	7667970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145706)	promoter-TSS (NM_145706)	-34.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	4.47068717256226	4.70458213514102	4.72623036944696	4.58688330335665	4.43505916289503	4.47047299731851	-0.338398122189637	0.426000091072343	0.793519426440139
Merged-chr11-118156724-4	chr11	118156242	118157242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27523.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	7.59172847030132	7.60284557973832	7.18570693041994	7.04920493825088	7.27186995765256	7.15499350090073	-0.471298416933353	0.0632090983514905	0.327368520828509
Merged-chr13-45693690-4	chr13	45693178	45694178	+	931.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	186234.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	4.17380124944097	4.2656759083557	4.09124557308222	4.1684184463401	4.0912464793046	4.25286358222711	-0.0481495818182098	0.918202935820977	0.981747877135909
Merged-chr4-3607810-3	chr4	3607310	3608310	+	935.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32931.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	4.63396117042029	4.25057155969593	4.84614159007105	5.75581675385105	5.69532708265957	5.83134894814275	2.47980254715106	5.5632699345909e-10	6.32388749613988e-08
Merged-chr11-21223004-3	chr11	21222475	21223475	+	909.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16057.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	5.50454252995143	5.60683469544213	5.60191395472221	5.77917005889679	5.64328839335132	5.55111747021451	0.17529389647917	0.582647397277626	0.873826743013405
Merged-chr8-119857968-4	chr8	119857461	119858461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4344.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	3.78969725563155	3.96415751075954	3.66217577666721	3.86844894486971	3.86743935422604	4.08536460687021	0.371463919272776	0.482486526588016	0.825656854728851
Merged-chr17-74524379-1	chr17	74523879	74524879	+	556.0	f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-3916.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	3.68390372262902	3.75316410498499	3.62761500175476	3.65938205662004	3.38978566984042	3.94434786604152	-0.0569147752574318	0.922183003708958	0.982542868764899
Merged-chr17-5588402-2	chr17	5587902	5588902	+	923.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	95802.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.18636090686264	5.58205471346663	5.33457035051287	5.05863675096299	5.13460882654069	5.640938826279	-0.177859969096659	0.64816629431319	0.901703040183932
Merged-chr10-127598371-2	chr10	127597871	127598871	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	B3A|SINE|B2	22777.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.57048772302097	7.16035962892122	7.66779419967452	7.29179768109087	7.56690843393355	7.4512209383648	-0.052249536000402	0.84104294337049	0.962832831784718
Merged-chr11-103033014-4	chr11	103032557	103033557	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	4514.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	6.22292025944238	6.01840513061488	6.09461429970013	6.13679521207087	5.8365713344206	5.94965135748472	-0.238289549115965	0.425081313137566	0.792910821008578
Merged-chr17-44053615-4	chr17	44053143	44054143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25159.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	3.06064619097319	3.03925420585976	3.10739682911647	3.21665221845095	3.07454319479104	2.99849058644563	0.151107168723861	0.817544071192648	0.956767881392089
Merged-chr2-45622942-2	chr2	45622442	45623442	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73663.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.26311079139897	3.33946547418315	3.3492693046851	3.31793796563935	3.30994688039999	3.30779433437141	-0.0185377781222751	0.975406127040401	0.994468932875617
Merged-chr1-127249701-2	chr1	127249201	127250201	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	44715.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.41796849113308	3.27841988707607	3.28135937073577	3.22382056495053	3.13409981590353	3.46195410235253	-0.228762189771042	0.714690509513822	0.926032699797971
Merged-chr3-58520476-4	chr3	58519975	58520975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-5346.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	6.56058804779676	6.44702796708237	5.94021744049086	5.94626568820569	6.11276267512056	6.27189944875318	-0.405613213736632	0.203587810623562	0.593661627698101
Merged-chr7-128611988-2	chr7	128611496	128612496	+	892.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	631.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	4.66296438055129	4.58440122273225	4.91839173475035	4.43299270966331	4.51558491375873	4.49274795334326	-0.575982543682255	0.175061505607347	0.55478815351067
Merged-chr4-59786104-4	chr4	59785561	59786561	+	639.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	5.92070113521709	6.21653113640569	6.22917547754235	6.29188746296548	6.3775604392372	6.20718172967542	0.291343739845552	0.31399191423978	0.708376289358925
Merged-chr3-137952418-4	chr3	137951903	137952903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29146.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	7.44696559816107	6.85733506393479	7.25446127394764	7.40213925885975	7.30833646620743	7.1552379206431	0.128429917478222	0.637684841042349	0.89735407749672
Merged-chr2-154902296-3	chr2	154901802	154902802	+	789.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9396.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.16666666984272	3.3590023090289	3.24540808399088	2.95285973015328	3.2366409450618	3.14340884733063	-0.591746428235276	0.370120036301716	0.754623703917894
Merged-chr2-158409734-4	chr2	158409220	158410220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291138)	promoter-TSS (NM_001291138)	-133.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	7.11666520460837	7.12805827503008	6.99342541409898	7.20435402608159	6.94556704817556	6.96822947223574	-0.0602637099797409	0.806411809498327	0.95416739679389
Merged-chr11-78247951-4	chr11	78247459	78248459	+	948.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359106, intron 1 of 3)	RLTR12E|LTR|ERVK	2208.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	4.02157010723694	4.05729320511009	4.04984942454656	4.22065466061998	4.17212765912538	4.16617522502523	0.412120805233042	0.381007343516243	0.762949944391489
Merged-chr7-80426521-4	chr7	80426041	80427041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21105.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	7.15649508422092	7.14486826101288	7.12944216720126	7.26299874217388	7.26821331552926	6.94348022641752	0.0477741484925119	0.845125328608735	0.963760118842549
Merged-chr14-64440735-4	chr14	64440261	64441261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026322, exon 6 of 11)	exon (NM_026322, exon 6 of 11)	265.0	NM_001253715	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	7.58699495071381	7.85614590570915	7.86932537818639	7.72354535036184	7.74962123842763	7.59616183398409	-0.115214102291494	0.613984649004102	0.887338990172734
Merged-chr16-58499838-4	chr16	58499356	58500356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	23570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.26887236901141	7.28452461620807	7.16276592482657	6.99831877782622	7.13940627451093	6.80115168334213	-0.369609257632886	0.1353430549194	0.49154257303863
Merged-chr9-62970514-4	chr9	62970011	62971011	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	10368.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	7.41094036001031	7.27044932911663	6.70101104440332	7.28123516948404	7.66544404475612	6.77795820996889	0.196967981020868	0.558812768654125	0.864865322594248
Merged-chr4-99179670-4	chr4	99179164	99180164	+	908.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14270.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.82630425508167	4.00102239073027	4.11386127321165	4.63960562795252	4.30822804583681	4.36656222322089	1.29289349748697	0.00759816430118907	0.0829260303217917
Merged-chr17-5195569-4	chr17	5195081	5196081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200507.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	5.30926912228062	5.45278131317331	5.11403896236379	5.32324749893909	5.1940165263931	5.27992069466692	-0.0930162278165946	0.792525928548711	0.949977808464961
Merged-chr5-93206836-4	chr5	93206331	93207331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	313.0	NM_029363	75610.0	Mm.175502	NM_029363	ENSMUSG00000029384	2010109A12Rik	-	RIKEN cDNA 2010109A12 gene	protein-coding	6.76628298970548	6.8698594608627	6.58001624834426	6.857472080483	7.00642947145317	6.60386141267702	0.14371456853245	0.595392706307254	0.879485821168365
Merged-chr13-5864542-7	chr13	5864036	5865036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	3047.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	7.43202827673974	7.50916462923199	7.08266242408982	7.26344778953122	7.52572457484768	7.24288805549431	-0.00918821847207085	0.971460108768606	0.99377981119604
Merged-chr7-27177761-2	chr7	27177261	27178261	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029391, intron 1 of 7)	B2_Mm2|SINE|B2	1122.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	4.32371518276515	4.4895132600916	4.39220243665736	4.40007872715044	4.12015565455522	4.37278298076767	-0.287156482008993	0.527445698784788	0.849959310385428
Merged-chr8-34965113-2	chr8	34964587	34965587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175091, exon 1 of 27)	exon (NM_175091, exon 1 of 27)	603.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	6.89127584712114	6.98037802434893	7.05704618794519	7.11765754915353	6.60781205106998	7.05121171162173	-0.0576166940484146	0.833418475299864	0.961070491919313
Merged-chr17-57292435-4	chr17	57291931	57292931	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	B4A|SINE|B4	13331.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	4.71186445614374	4.61684486689603	5.04295996805436	4.84896517836124	4.76617633029482	4.54508754664516	-0.135757811223299	0.747442861808502	0.936616753190594
Merged-chr10-94355585-4	chr10	94355075	94356075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43626.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.26391095857271	6.90549677665504	6.76763131998905	7.4981663111044	7.46459587666932	6.90637665387745	0.482275136408064	0.101905840863524	0.425800000330024
Merged-chr2-130525243-3	chr2	130524750	130525750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	38499.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	7.72620937825802	7.85947251825641	7.44108050387285	6.81445571673912	6.88874360678851	6.82216886594071	-1.26711943310703	3.16114644695386e-07	1.96733488076393e-05
Merged-chr15-73350513-4	chr15	73350010	73351010	+	862.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	72681.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	2.88897469391794	3.17420090830239	3.14000119937925	3.24849674317039	3.19202288511239	3.09367435823737	0.470582489279117	0.479341851687352	0.824178515809639
Merged-chr7-16614688-2	chr7	16614181	16615181	+	1000.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_172739, exon 1 of 7)	5' UTR (NM_172739, exon 1 of 7)	312.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	7.36485074503822	7.46800703919249	7.53924025401316	7.32824523682022	7.03151503466864	7.23779023314428	-0.380062099495956	0.112556738144325	0.448241038651517
Merged-chr14-31162037-2	chr14	31161537	31162537	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 7 of 68)	intron (NM_138672, intron 7 of 68)	6604.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	3.88032495265825	3.98689291389594	3.7383690333048	3.86828421022736	3.65824908088771	3.80885194632427	-0.328373628088621	0.535210774802471	0.85341621121369
Merged-chr9-50767686-1	chr9	50767186	50768186	+	666.0	f1_c57bl6.idr	promoter-TSS (NM_198675)	promoter-TSS (NM_198675)	498.0	NM_001361108	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	6.77047251643616	6.95429366946223	6.41865364858595	6.11634038233044	6.34735821655575	6.49705337377252	-0.671191593875442	0.0237896935574294	0.181143820113525
Merged-chr13-60876707-4	chr13	60876191	60877191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-12275.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	6.20700159264106	6.64559418179968	6.58489636285134	6.80182669494128	6.76690729306184	6.46617558548821	0.321875428853764	0.266406215857471	0.664166899200562
Merged-chr1-155051203-5	chr1	155050634	155051634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32130.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	8.2376929242419	8.3456004247254	7.81019979368725	8.11402147615536	8.52804091030123	7.9260232019497	0.0911756874134163	0.738595825068278	0.93406400924634
Merged-chr1-131184527-4	chr1	131184016	131185016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	15669.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	4.02437885632294	4.0781214932028	4.07557110119179	4.04328265043067	3.83633842997584	4.43990154188069	0.171009516627822	0.741126527736479	0.934742147011145
Merged-chr10-13299361-4	chr10	13298861	13299861	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	24928.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.98127882970849	5.81552788649736	6.08563081689969	6.23174469720939	6.5420493714124	6.05635780429767	0.588964161016052	0.0562160528338116	0.305567371583211
Merged-chr15-12238024-2	chr15	12237524	12238524	+	608.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 6 of 15)	intron (NM_001356498, intron 6 of 15)	32996.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	2.76294523675768	2.82809593757741	3.17648987166681	3.12628121385828	2.98509617003301	2.89797327666084	0.370959925164967	0.605141614896829	0.883394857670054
Merged-chr4-88706062-4	chr4	88705554	88706554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14786.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	5.99086250208521	6.27442176630983	6.04029344046751	5.80431911910995	6.32150680448003	6.26927371704362	0.0727714374934177	0.81959546610487	0.957283576025177
Merged-chr13-54215989-3	chr13	54215483	54216483	+	997.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	23850.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	2.96997382206526	2.80467383303724	3.03552398593535	3.63391250715974	3.5348698479305	4.00162152640971	3.71366253792529	3.14181605050649e-06	0.000147530603798275
Merged-chr3-15575126-3	chr3	15574629	15575629	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-64.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	5.17799452705204	6.1338420416157	5.50996693863161	6.15589518207947	5.99758786001083	6.10852171355742	0.706984278544593	0.0713497628167204	0.350506025767722
Merged-chr13-20798110-4	chr13	20797615	20798615	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4002.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	5.9428700836298	5.93154100821759	5.84576659688624	6.61298494577083	6.83127268773972	6.28447883531383	1.15776636578945	0.000111402002277536	0.00310225495498971
Merged-chr10-128096119-2	chr10	128095619	128096619	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	3336.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	4.25319513523477	4.19480439874652	4.84303842077455	4.32460605056039	4.33726232655832	4.59089087083995	-0.0868474495892858	0.859339366787933	0.967267211164924
Merged-chr10-116950426-4	chr10	116949875	116950875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	78.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	4.84182572284977	4.48625041592482	4.72626477874432	4.75893725959245	4.52900792006146	4.75370305005626	-0.0318422828150058	0.939836852018358	0.986738777817436
Merged-chr16-35839805-2	chr16	35839305	35840305	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 14 of 16)	intron (NM_001039530, intron 14 of 16)	31577.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	2.84846190834986	2.7698413766285	2.95271981505584	2.90728471396617	2.62476995032405	3.24529778903045	0.42193083791619	0.577994676263024	0.872271398173251
Merged-chr7-133125088-2	chr7	133124588	133125588	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1605.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.96030740614927	4.73132895885212	4.25099242614747	4.58375363888117	4.41499956838885	4.42026073657292	-0.522108682878525	0.265449794862477	0.663161206920213
Merged-chr5-100635138-6	chr5	100634614	100635614	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39142.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	4.7865268015894	4.72065485806192	4.59650977148123	4.88010089418497	4.82749676831199	4.5774583417001	0.155528883244661	0.702914987936947	0.922046100866387
Merged-chr2-18773253-3	chr2	18772762	18773762	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12400.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	3.53791391928397	3.14097427508637	3.04807961032487	2.80970270404508	2.71928523879899	2.7977397702978	-2.4942820887412	0.00136275933409096	0.0229725443012643
Merged-chr2-129585795-4	chr2	129585299	129586299	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7040.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.90580837032523	7.64069731437919	7.16161463374218	7.46337712716103	7.571188516128	7.64717461052356	-0.0789769911887895	0.773939737722924	0.944238027249587
Merged-chr13-97240518-4	chr13	97240041	97241041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-564.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	5.56004818964708	5.6133726040151	5.64846863887387	5.52427413961485	5.66849482503422	5.90615709598811	0.176425371675735	0.586029265411858	0.875241382018378
Merged-chr11-117317739-2	chr11	117317239	117318239	+	828.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-13976.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.75203840106177	5.5598412903131	5.58450135409759	4.97161295795237	4.96964775804907	5.39386504767686	-1.03900749240795	0.00383898153538366	0.0503994755613996
Merged-chr2-14228118-2	chr2	14227618	14228618	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1296.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.86796379583716	6.10476787747931	5.7286881612165	5.49920788582521	5.7368407416662	5.96229637313607	-0.319333140258367	0.334941448430973	0.725322924241213
Merged-chr14-55696781-4	chr14	55696306	55697306	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-14989.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	6.87312630341109	7.13800177850111	7.06171204267907	7.47201144820373	7.71429004390741	7.00939300230894	0.616687843280035	0.028882799820114	0.20389242448732
Merged-chr2-23013277-2	chr2	23012777	23013777	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	26964.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.04882389725653	4.38581480818486	4.68670704854092	5.11972719081868	5.31678291177832	4.32348990606995	0.546472396246988	0.294845574953052	0.691747281751485
Merged-chr7-17056221-4	chr7	17055723	17056723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016868, intron 2 of 14)	CpG	456.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	5.1405033759255	5.70048078108638	5.19351331590363	5.47744883159945	5.50536412461028	5.1522413287644	0.0287242975162566	0.940811453748655	0.986888338850358
Merged-chr13-116986947-2	chr13	116986447	116987447	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	RSINE1|SINE|B4	38569.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.00968081190244	3.50327836040942	3.78735699811019	3.50425057955181	3.60344357916985	4.0873928274796	-0.1078933192573	0.858566873188578	0.966933063363181
Merged-chr9-21989449-4	chr9	21988945	21989945	+	971.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	8.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	4.15433639858856	3.98926069457188	4.11600196930619	4.07097925917826	3.97526391351827	4.13786686002723	-0.0853466068254758	0.859627002256793	0.967416092129559
Merged-chr17-27567908-2	chr17	27567414	27568414	+	685.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2187.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	4.13097361188337	4.18539108655993	4.47608408936765	3.72489910735745	3.9115329567967	3.98549930368981	-1.13866743155338	0.0258719017755099	0.190677520189249
Merged-chr13-55468027-2	chr13	55467527	55468527	+	657.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	3760.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	2.52143178761823	2.55721635214933	2.69452161291264	2.62572635710309	2.59821770658501	2.9424481456768	0.7442589269778	0.334450079958802	0.724975831115824
Merged-chr3-133550124-3	chr3	133549682	133550682	+	688.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5792.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.55553845896669	4.33616460460274	4.15432210530412	4.25580419443116	4.56566335522559	4.6210131514392	0.309257139697883	0.507730785714482	0.83937183536777
Merged-chr15-83432866-1	chr15	83432366	83433366	+	724.333313	f0_balb.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-16.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	4.62724625045854	4.7225700554981	4.53541827293763	4.47557290659349	4.29887905316753	4.75822638960202	-0.303632244833463	0.4891134287955	0.829459847891797
Merged-chr10-41972957-3	chr10	41972467	41973467	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 7 of 17)	intron (NM_001034858, intron 7 of 17)	45415.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.92370053770162	5.05614383883726	4.94805472565039	4.77355157699432	5.0538076496185	5.1808007596167	0.0655404681064697	0.864835182889014	0.968418015527656
Merged-chr12-51718807-4	chr12	51718304	51719304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 2 of 5)	intron (NM_001329698, intron 2 of 5)	-26890.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	4.57674246091178	4.48290728837522	4.50046538552444	4.51806825076869	4.23441448465334	4.3952965784843	-0.353410598625114	0.419627098488734	0.78912314080165
Merged-chr6-86595406-2	chr6	86594906	86595906	+	811.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32768.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	6.04723687064164	6.19031550015255	6.20782610550504	6.33088000592786	6.38583254249549	5.78853570556575	0.104510753117583	0.741345117479619	0.934809943386314
Merged-chr8-34154793-8	chr8	34154301	34155301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026432, exon 1 of 6)	exon (NM_026432, exon 1 of 6)	238.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	8.73654790481822	9.20334098181793	8.29369270517754	8.57286137734548	9.04644189116334	8.6015623348741	-0.0586280594434065	0.842399124304162	0.963021575063938
Merged-chr15-73078791-8	chr15	73078295	73079295	+	910.2728880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11617.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	6.17859090366927	6.28900182953693	6.40696254952608	6.39204547416181	6.51172677426395	6.62009586871508	0.358318565965785	0.189734731481114	0.575767774402458
Merged-chr9-57473484-4	chr9	57472993	57473993	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	5.64582598231727	5.70905987189834	6.15988508594118	5.29067013979195	5.41483632105057	6.04472519249721	-0.42556245574856	0.27383109700462	0.671279304608923
Merged-chr7-81573630-1	chr7	81573130	81574130	+	603.5	f0_balb.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	2338.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	4.13099383836834	4.02853471842505	3.94922680723483	3.74943686451765	3.912429023957	4.0661571163419	-0.395256108005559	0.436066778784365	0.799451274848915
Merged-chr11-29705409-4	chr11	29704916	29705916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	11642.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.29524452553522	6.2572250198907	6.24381454365575	6.3184150134874	6.64872783792546	6.2415215733024	0.266285577428111	0.354075280632366	0.741235242596448
Merged-chr7-107649344-2	chr7	107648844	107649844	+	621.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 2 of 24)	intron (NM_008905, intron 2 of 24)	-16134.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.1909413530446	3.22297828252566	3.30732116866187	3.05425212656425	3.2024760464335	3.58314734270028	0.21244353490609	0.745148873605494	0.936032341688524
Merged-chr16-37576627-2	chr16	37576127	37577127	+	589.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3526.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	3.0238069544663	3.0448710681573	3.26716784068485	3.19821447752432	3.62700745654125	3.10114375767351	0.935087129239124	0.170481080268568	0.547846214064376
Merged-chr19-3575933-4	chr19	3575442	3576442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028999)	promoter-TSS (NM_028999)	-193.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	7.95666376851554	8.03802939192319	7.74993783358312	8.0668790040154	8.11582228173597	8.06822708434662	0.224133835470915	0.302027375961766	0.698745868293016
Merged-chr13-41515918-4	chr13	41515444	41516444	+	907.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28584.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	2.93702872982884	2.68967285124346	3.09191854781762	2.93017827866406	2.71085604550572	3.16328908950314	0.141931832214887	0.849175719524031	0.964608463945227
Merged-chr11-106105989-2	chr11	106105489	106106489	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	(GGGGA)n|Simple_repeat|Simple_repeat	21087.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	4.99981585384065	4.51885537389777	5.13661175748369	4.99938454568286	4.60371475290137	4.9002383733767	-0.142020983579441	0.746190259302906	0.936287949695029
Merged-chr10-118049520-3	chr10	118049023	118050023	+	882.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92264.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.69412152961263	4.4198684329906	4.37379720496226	4.68269948912446	4.86776902534083	4.5340766115607	0.482195805750784	0.268648830159785	0.665904014416141
Merged-chr11-68778105-3	chr11	68777652	68778652	+	699.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 15 of 40)	intron (NM_175260, intron 15 of 40)	74979.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	2.64215813769442	2.6004205152057	2.47323418351955	2.64864607729339	2.60420413851085	2.79896352600412	0.590611318161372	0.444571724641548	1
Merged-chr12-35406270-4	chr12	35405774	35406774	+	941.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128715.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.38445368762618	4.07383562682443	4.40858746688538	4.18490642492065	4.09882814484438	4.34992455239312	-0.231324940073659	0.626501891206749	0.892916235446326
Merged-chr7-81343222-2	chr7	81342722	81343722	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	2012.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.5750937387088	3.40317198136936	3.58593899272065	3.35378838701956	3.10832060615442	3.84697098844123	-0.194472970227059	0.767931101813113	0.942754450111622
Merged-chr4-134914990-4	chr4	134914487	134915487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-71.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	6.69166959383783	6.76885402915042	7.17106285006226	6.95884531204628	7.14733980910987	7.08421894105218	0.280714452482287	0.29564744483826	0.6925798212347
Merged-chr6-113655005-3	chr6	113654514	113655514	+	839.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	16547.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.3971752220121	6.1524864480758	5.95657861718105	6.2881025109941	6.23224461628925	5.80838145811598	-0.0879045414762754	0.783505389329565	0.947225267514266
Merged-chr13-9756403-2	chr13	9755903	9756903	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	B1_Mm|SINE|Alu	7407.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.73202694343898	3.54829355379622	3.35347062844583	3.56262881291876	3.51139394683354	3.54226245788123	-0.082993113084647	0.887087169900835	0.973818520404627
Merged-chr1-80614857-4	chr1	80614358	80615358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	50494.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.81467409863985	5.61685087560102	5.87689583107066	5.9143778218361	5.61135363925264	6.04940043787041	0.162999463105047	0.617313739055789	0.888810836054056
Merged-chr4-128804877-2	chr4	128804377	128805377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	1235.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.33831076163423	3.06625914127214	3.62641691415561	3.37645959789016	3.12887966947115	3.49624991776389	-0.0756594751303613	0.909167676310011	0.979384717565381
Merged-chr9-20643312-4	chr9	20642835	20643835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	-1.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	6.22681393319333	6.18218782809271	6.14532684381402	6.54821917358777	6.76063597688066	6.57389906393924	0.732008518905245	0.0066639854226564	0.0753876548470207
Merged-chr12-108637874-6	chr12	108637337	108638337	+	895.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2084.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.41215552650292	7.56621411770186	7.66662478057423	7.50772157832883	7.84909286030037	7.63258629668902	0.184830238995485	0.438079896913648	0.800398578507549
Merged-chr11-83630789-3	chr11	83630297	83631297	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18581.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	6.16180684399257	5.80799334153754	6.35826480142257	5.49301448936559	5.47688723201008	5.55592212979663	-1.10349957020456	0.000902511032764886	0.0166399596752273
Merged-chr6-42398078-2	chr6	42397578	42398578	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2160.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	4.84800382451379	4.6871566846462	4.24767712527547	4.35993972472775	4.15253906822722	4.58614397785218	-0.64618905823583	0.17820530018699	0.559276830911593
Merged-chr9-50591027-4	chr9	50590521	50591521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12828.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	6.68463362667678	6.63951307603142	6.50939547298836	6.66629645004202	6.67014981301833	6.99372620804902	0.250090831612593	0.349201608045527	0.737209301320654
Merged-chr18-62173473-3	chr18	62173004	62174004	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6477.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.10379968241023	4.96814577898661	5.3426216622017	5.00186043476872	5.0972120359536	5.22565591541132	-0.0610719536861896	0.869804371855403	0.969901645415424
Merged-chr13-9638206-4	chr13	9637685	9638685	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 31 of 36)	(CA)n|Simple_repeat|Simple_repeat	125625.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.64609304662381	4.48209660221928	4.33839438437161	4.77031742387118	4.46785947800474	4.54224853314034	0.234854769672042	0.591623979403628	0.877710165381539
Merged-chr17-75551967-4	chr17	75551472	75552472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133747)	promoter-TSS (NM_133747)	-26.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	6.25212967448266	6.58593422700509	6.312068128786	6.66959955320318	6.52305806311757	6.33170949461796	0.201120619638786	0.482326530098588	0.825550117860779
Merged-chr14-62354579-4	chr14	62354082	62355082	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22514.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	3.79644411092125	3.60766969585678	3.72294261648188	3.53308909193662	3.52797057675523	3.79215210876338	-0.326475973471478	0.55712541372651	0.864055599824012
Merged-chr6-128840169-2	chr6	128839669	128840669	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13854.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.20253972904043	3.03182591369883	3.37170490310734	3.09475469344237	2.69813700172684	3.05445569813664	-1.12685497139121	0.122816085260101	0.468881891366023
Merged-chr13-12475480-4	chr13	12474919	12475919	+	859.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-13681.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	3.77097547459839	3.47772827899614	3.7700479330193	3.72025396868996	3.5912806208835	3.63291329571987	-0.0965326667150598	0.862793634263458	0.96809238390547
Merged-chr5-139725187-4	chr5	139724681	139725681	+	810.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	11152.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.02078229290943	4.83703165940846	4.92791782594962	5.38916431805492	5.25507464504977	5.06762461275205	0.669118566245635	0.0708070582274997	0.34888764076429
Merged-chr18-23883524-2	chr18	23883024	23884024	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-71164.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.55006500474062	6.28120873554235	6.54439231457619	6.29086965789781	6.23378096631672	6.2521490923425	-0.331751393365011	0.231083370411119	0.626862757919563
Merged-chr15-94597936-2	chr15	94597436	94598436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8112.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	4.00520862404602	3.83617187773158	3.70499094913302	4.15593192416892	4.11094046553586	4.27204702031487	0.929266282919097	0.0678783067979204	0.340919789463473
Merged-chr5-120812621-4	chr5	120812134	120813134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003507)	promoter-TSS (NR_003507)	-1.0	NR_003507	23961.0	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	5.98070358091958	6.25657057578088	6.20077528341823	6.1780594860091	6.40056009220509	5.83812951724867	0.0414548585756196	0.895755615508872	0.975665889379756
Merged-chr4-33347269-4	chr4	33346777	33347777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 8 of 15)	intron (NM_001305273, intron 8 of 15)	36966.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.62787686182534	3.37724411393946	3.76868554259294	3.52470796346938	3.80451200899813	3.46740535676897	0.0698720660963162	0.906656066714529	0.978787664113116
Merged-chr18-76933503-4	chr18	76932991	76933991	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	LTR10_RN|LTR|ERVK	3464.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	4.41804515345985	4.68955353927436	4.5795421026189	4.2105057495453	4.52501890227137	4.64537371118869	-0.242093780537116	0.589474054436646	0.876882582082885
Merged-chr2-45279640-4	chr2	45279168	45280168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162226.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.74150832082	6.56025775628311	6.38752039097222	6.64857241030237	6.43646626667084	6.14924791518048	-0.228678489002734	0.436849305791585	0.799681606793859
Merged-chr5-122648669-2	chr5	122648169	122649169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	MIR|SINE|MIR	-1755.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	6.47727744443675	6.26556692694328	5.57069540043236	5.70145176948592	5.32646544181647	5.01248937421308	-1.40397109656733	0.000708689918155622	0.0137938411017294
Merged-chr18-8376833-4	chr18	8376313	8377313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	507100.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	3.6679347223964	3.66551293070498	3.7101760501759	3.42899795493157	3.27094087289166	3.72980033249696	-0.721612321048806	0.222109330962411	0.617038101491437
Merged-chr19-34207199-2	chr19	34206699	34207699	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10309.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.23764865743445	4.25067362481839	4.06443337648922	4.1251029418603	4.16302852565302	4.40430775044493	0.0984919222876706	0.834877045336249	0.96138272464184
Merged-chr12-26469291-4	chr12	26468812	26469812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020557)	promoter-TSS (NM_020557)	97.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	6.5614157397384	6.83691822958673	6.88735932266594	6.98214964133311	7.12092822355982	6.70037399294909	0.294635144636141	0.279830160791062	0.67751354552631
Merged-chr15-82147141-4	chr15	82146653	82147653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033218)	promoter-TSS (NM_033218)	-116.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	7.2635688738882	7.41727816036682	7.02190322091422	7.31167650512107	7.51218343949011	6.52546911553472	-0.0790076459787094	0.81012165391658	0.954958386398407
Merged-chr4-122859257-4	chr4	122858762	122859762	+	834.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008917)	TTS (NM_008917)	23035.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.85337902578538	4.72210355701812	5.1288548669346	4.7807295896165	5.07859713857548	4.56451632234473	-0.143377374564065	0.738548159086874	0.934037286965188
Merged-chr1-91010861-3	chr1	91010351	91011351	+	811.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	12124.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.46362536959384	3.54020465875878	3.82287971276981	3.7484830658211	3.33814923971212	3.69636138909244	-0.0331010361390856	0.9557389626967	0.989783387008628
Merged-chr6-31253371-4	chr6	31252876	31253876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040257, intron 2 of 7)	intron (NR_040257, intron 2 of 7)	33025.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	2.70599425150953	2.72572618135492	2.64438698617689	2.8736586175128	2.69923810107312	2.8435665617893	0.58205883295067	0.426405798783467	0.793775990271191
Merged-chr4-63386405-2	chr4	63385905	63386905	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 5 of 21)	intron (NM_001045514, intron 5 of 21)	11835.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.86910798636975	5.01563144069792	5.19736849401694	5.16485817685245	5.20821459110619	5.32185821205068	0.426729428914695	0.243298378745764	0.640502592040103
Merged-chr16-94290291-4	chr16	94289798	94290798	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360045)	promoter-TSS (NM_001360045)	-7.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	2.57043398182136	2.56115568501604	2.91927964166684	2.61107113418498	2.2460337732154	2.57532744811079	-1.18623281332406	0.173904409644593	0.553140727918843
Merged-chr4-32011360-3	chr4	32010870	32011870	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009316, intron 14 of 16)	L1MA5A|LINE|L1	47263.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.72650140683604	4.88710635880105	4.78436733601033	4.7275801878701	4.31968345981824	4.84959930244558	-0.381887434709084	0.377754805299536	0.760155399455595
Merged-chr1-89070219-4	chr1	89069709	89070709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-206.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	6.57141397206633	6.82223995511805	6.93302700209221	6.81605464556505	6.85187181349744	6.74377799445756	0.0463834345174858	0.858838661521522	0.96702230262239
Merged-chr13-69611625-4	chr13	69611126	69612126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145354)	promoter-TSS (NM_145354)	-163.0	NM_175283	78925.0	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	6.70960636400379	6.7306943928141	6.45349820867612	6.67185132894192	6.77463951756021	6.26840523487272	-0.0655301563971742	0.820523538103333	0.957668778523567
Merged-chr9-107575090-3	chr9	107574589	107575589	+	962.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1838.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	4.6103294589723	4.6486339836842	4.49176257866416	4.88798836955339	5.2037174960257	4.85338417265682	0.933102584849226	0.0222472541248215	0.173247498476195
Merged-chr18-56709876-4	chr18	56709306	56710306	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	B3|SINE|B2	1993.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	5.40669890698465	5.5723123702884	5.56453668625313	5.85286069833065	6.04175434435365	5.81507933652506	0.730379490736241	0.0204869246014584	0.163988689510791
Merged-chr6-38690069-2	chr6	38689569	38690569	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27000.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	4.21618942567537	4.24829569580028	3.9552224677263	3.9066213586856	3.63830046137344	3.92357759697368	-1.01258529992195	0.0516593800136441	0.289967194561205
Merged-chr15-100227776-4	chr15	100227284	100228284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-75.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	8.30082429449839	8.64543905112539	8.13668099202456	8.3861527649156	8.53726150463696	8.1500871860262	-0.0168402925564844	0.945711414608112	0.98796006280508
Merged-chr13-110599785-4	chr13	110599291	110600291	+	975.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	204747.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.4643068905811	7.68253055954387	6.61908717245246	6.97682189482199	7.11946056649018	6.27574618702872	-0.740352078937735	0.2263742728924	0.621328050925588
Merged-chr7-19118400-3	chr7	19117910	19118910	+	971.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1449.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	2.11097799502252	2.21009015908691	2.30178830054925	2.421301388168	2.50900551642346	2.56923025416673	2.07004714854038	0.0211426655273866	1
Merged-chr10-79852383-4	chr10	79851886	79852886	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-2046.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	6.18478571905271	6.21462042140551	6.64702724437525	6.17874110348977	6.16117727783536	6.67561110349144	-0.00977893344927576	0.97577378404768	0.994540154302743
Merged-chr8-61558449-3	chr8	61557947	61558947	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32722.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.42800781353649	5.92310560924932	5.93090830146633	5.59783272164979	5.51192956083048	5.75570816702188	-0.291302488797416	0.39830546457327	0.775020487248618
Merged-chr19-37535232-4	chr19	37534743	37535743	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15175.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.14816510878708	2.68330595633959	3.07489689456759	3.00100373022921	2.73341221218389	2.78153829692049	-0.671005989838093	0.376540298334051	0.759304101586887
Merged-chr14-20708539-3	chr14	20708008	20709008	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027996, intron 1 of 25)	intron (NM_027996, intron 1 of 25)	956.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	5.93840849454972	5.92150962901678	5.55499507050844	5.65079924786356	5.5406877788733	5.52876063195233	-0.464114333071453	0.154116368382107	0.523241150332653
Merged-chr17-35235100-4	chr17	35234606	35235606	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347351)	promoter-TSS (NM_001347351)	96.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	7.15909073391736	7.04536958553861	7.32572488878695	7.16973820516466	7.3478879951273	7.65210895885722	0.332447514890528	0.198908517173094	0.587343866831168
Merged-chr3-28048119-2	chr3	28047619	28048619	+	593.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164056, exon 11 of 27)	exon (NM_001164056, exon 11 of 27)	63948.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.38006309828452	3.70876567460986	3.68458136857551	3.65050995482398	3.60000814665004	3.65084480533522	0.12030815819686	0.832368919612658	0.960616839788396
Merged-chr19-37370614-4	chr19	37370116	37371116	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5787.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	7.21503984140532	7.53539336598323	7.39419948816017	8.13179287342857	8.38206283685474	7.81115414505514	1.07444553777787	2.95540461574089e-05	0.00101617069118416
Merged-chr13-60698193-3	chr13	60697692	60698692	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	L1M5|LINE|L1	88172.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.31337270967885	3.26516453823293	3.96485675587603	3.54631674336685	3.38335874825962	3.63291560966569	-0.10262900122891	0.875550495748623	0.971054644903929
Merged-chr11-74841275-2	chr11	74840775	74841775	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	10351.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	2.82618257017789	2.64522031313397	3.04429095272345	3.05103939042972	2.60395709359473	3.00226622699896	0.259884442280635	0.736166654493571	0.933046642264646
Merged-chr19-56734170-4	chr19	56733647	56734647	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11775.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.69920408174344	4.92273913706126	4.81976528323365	4.71618988698699	5.00762956621042	4.84759230381421	0.114756339833466	0.773137842287961	0.943981747443949
Merged-chr15-50816721-3	chr15	50816218	50817218	+	653.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	72331.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.60281095285372	4.04335834698299	4.0462254472358	3.66371920820047	4.02168049151755	3.71765438588609	-0.288349245464607	0.612974692560001	0.886978895339216
Merged-chr3-65929984-4	chr3	65929480	65930480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28269.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.79635719868917	6.69342850209729	6.19081401885512	6.57774662066889	6.60146976863605	6.20659450101004	-0.183741699245012	0.554840118777115	0.862989905297353
Merged-chr7-137412274-2	chr7	137411774	137412774	+	695.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1518.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	6.91712353693251	7.31854810813422	6.52780484449688	6.89090599507393	7.19288869646982	7.00702780377868	0.0984675884158162	0.74660398740183	0.936300236930265
Merged-chr17-46890582-4	chr17	46890056	46891056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-65.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	6.5465186543744	6.7969107539971	6.59230585606214	6.42882508181775	6.47769858815429	6.49465982910888	-0.299626248870492	0.257694811842043	0.655122723295615
Merged-chr2-163996168-2	chr2	163995668	163996668	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	971.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	4.64278221040744	5.23639189644423	4.99439960501131	4.8896653694583	4.97016757021713	5.31269561802881	0.166503235872282	0.69233333917434	0.918648603655029
Merged-chr6-116198108-4	chr6	116197600	116198600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4726.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	7.23478644371709	7.01899051837709	7.26397601039561	7.11896610718965	7.34973628213753	7.21700275459511	0.0938889868077975	0.70011045265562	0.92088373406885
Merged-chr6-57535647-4	chr6	57535150	57536150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-224.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	6.94693489325396	7.31232195539132	7.17492059193696	7.2165533133627	7.5355925514049	7.27993704551681	0.302886761654653	0.237891268029292	0.634434019151762
Merged-chr4-147938341-4	chr4	147937859	147938859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1583.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	5.8097091438312	6.00753008859793	6.03362901274987	6.17436202960918	6.30479820591944	6.28226036553695	0.521684837983	0.0701009260616416	0.346704580108005
Merged-chr11-76474661-4	chr11	76474152	76475152	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 3 of 21)	PB1|SINE|Alu	-6187.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.03336046799659	4.66330913368522	4.85514257182952	4.70094262052737	4.66418403503738	4.37241822549949	-0.610799150706852	0.154499075652494	0.523836159179075
Merged-chr16-23272989-4	chr16	23272431	23273431	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-17539.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.44560835384094	7.30101590893281	7.09993555840754	6.89802708999045	7.21654627319693	7.29040009863892	-0.226478500462604	0.381586173490547	0.763227382125464
Merged-chr19-18630628-4	chr19	18630120	18631120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	1193.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	7.39897444754182	7.64263238044112	7.24507177418109	6.94379567750159	7.50939198030401	7.31417740677226	-0.24023643323681	0.38269623626477	0.764125175224222
Merged-chr11-93980022-4	chr11	93979523	93980523	+	961.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11502.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	4.52683959736207	4.52901127184116	4.63263101866227	4.75683925311758	4.31128044743064	4.81068364255784	0.178163830289986	0.687856810412958	0.917193226920892
Merged-chr16-31294000-4	chr16	31293485	31294485	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	4.14150540812516	4.0407746460322	4.38469779693888	4.02375780921297	4.0260296231048	4.32931346865908	-0.178850408950843	0.715830423757976	0.92647595514209
Merged-chr14-49066506-4	chr14	49066001	49067001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-48.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	7.68745756516827	7.90376078569551	7.87674283030267	7.55760174782517	7.49818398173991	7.711457140235	-0.344049444788232	0.127823510481891	0.478062686991064
Merged-chr16-14163225-4	chr16	14162736	14163736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023317)	promoter-TSS (NM_023317)	-39.0	NM_023317	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	5.84850321999443	6.14385616421023	6.3004123079817	6.39834925938763	6.55507429902277	6.71352907739816	0.7517497123082	0.011179780225307	0.10877979591823
Merged-chr19-41402240-4	chr19	41401758	41402758	+	917.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17188.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.86057652915808	6.56146366982581	6.94705442306902	6.9542267549994	6.89417843618944	6.53389524207762	0.0333455868691655	0.90532943443144	0.978279198518346
Merged-chr17-7917403-4	chr17	7916884	7917884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	3.92804147744088	4.14791589391379	3.90475479689749	4.23290044193638	4.1831638784651	4.39370165760598	0.740013283125418	0.129348996265346	0.481107632717825
Merged-chr6-92100337-2	chr6	92099837	92100837	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	7904.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	3.47004874554263	3.81004630420661	3.58933880656996	3.81612450859245	3.59510932067034	3.91493095980594	0.467995506363555	0.410507423714017	0.783410970216186
Merged-chr2-124711232-4	chr2	124710724	124711724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57643.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.98962276757945	7.22936688339673	7.247764838369	7.45963179881408	7.55287768955613	7.22199238045457	0.398896690350972	0.106542084180023	0.435805414435716
Merged-chr17-42876626-4	chr17	42876119	42877119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009847)	promoter-TSS (NM_009847)	-195.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	8.12989799597533	8.08112964828167	7.94401347735817	8.06486591237332	7.97579801608345	7.75877178229398	-0.160331322431909	0.470359671063937	0.819495618343931
Merged-chr17-26781024-4	chr17	26780541	26781541	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172149)	promoter-TSS (NM_172149)	-38.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	4.92666278681911	5.01266406854146	4.87693321762505	5.01483869889034	4.96727496559701	4.78624552681237	-0.023791727886301	0.950146029860845	0.988400419899929
Merged-chr12-86886543-2	chr12	86886043	86887043	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep488|DNA|hAT-Tip100	-1729.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	3.30053876276051	3.39724058723596	3.4442382053546	3.46162593136315	3.42133302594411	4.03828881023976	1.00787542616123	0.106105273320504	0.434788120873262
Merged-chr5-135909683-4	chr5	135909187	135910187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21768.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	7.66811781701066	7.78214665105116	7.53218787136123	7.27840180735986	7.30643786773148	6.76685590285872	-0.758017770993573	0.00445124103455997	0.0564156822402157
Merged-chr2-134644191-4	chr2	134643678	134644678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-57.0	NM_029148	52837.0	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	6.00864122519164	5.90481347103506	5.3660702508253	5.78209378738095	5.69956925582848	5.36302949505595	-0.302200264234035	0.407268597209726	0.781419523604339
Merged-chr1-191328120-4	chr1	191327670	191328670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	2205.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	7.67943592243752	7.782838771779	7.51531159938597	7.89217187516292	8.24647287055573	7.7547100579608	0.460172543119475	0.0640263283526343	0.32982664499337
Merged-chr10-23180225-4	chr10	23179723	23180723	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	169667.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	4.61817948896106	4.79574441176024	4.39460893693738	4.40650337957226	4.74302647207801	4.3696295381775	-0.221921818593068	0.62542134488786	0.892513881101067
Merged-chr3-116006875-4	chr3	116006376	116007376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163515)	promoter-TSS (NM_001163515)	530.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	7.80776548800562	7.82972885571181	7.7737175474246	7.62792237091114	7.76389579573276	7.87093560725193	-0.0713597374031683	0.743896097320692	0.935814517574594
Merged-chr12-87260683-4	chr12	87260144	87261144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134044, exon 3 of 19)	exon (NM_134044, exon 3 of 19)	3600.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	6.15538537407456	6.06683987461966	5.8962919651848	5.86658242084266	6.35356683168645	6.03033502508293	0.104012492185138	0.741576719533099	0.934878295206222
Merged-chr6-122557187-4	chr6	122556700	122557700	+	951.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 1 of 4)	intron (NM_009645, intron 1 of 4)	3391.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	3.69169528732117	3.59888565265575	3.78350338102538	3.57815643076958	3.49631888246405	3.54188451167432	-0.532906941775468	0.337253886138705	0.727188944229835
Merged-chr3-52300155-2	chr3	52299655	52300655	+	799.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	31818.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.67466057071668	3.6068612728712	3.56165192346833	3.35397869229286	3.80179056472761	3.97788615805853	0.393742228525151	0.509211340840943	0.840266876523415
Merged-chr18-84091728-4	chr18	84091225	84092225	+	934.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	3567.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	5.56337751123643	5.63947232020766	5.79294738812596	5.84375872311475	5.83252805680832	5.46575353185693	0.13741455898393	0.675328512011214	0.912152821313949
Merged-chr8-120698612-2	chr8	120698112	120699112	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30292.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	3.30918335150554	3.63893546582307	3.80200111080556	3.46358898485274	3.34004788914423	3.87000285199371	-0.083770790858455	0.893792765081321	0.975280227461205
Merged-chr5-23975225-4	chr5	23974729	23975729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	55083.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.45039920724126	5.34676141387128	5.31282897113155	5.22241189038698	5.11594315828812	5.24933751858044	-0.368608801828216	0.284538829380075	0.682276040101953
Merged-chr18-55389827-4	chr18	55389322	55390322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-397231.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.16713862849342	3.86390087436155	4.21544267383376	3.93392720339745	3.68271076509954	4.28212442101415	-0.316560079802633	0.560663448900072	0.865261302076164
Merged-chr11-95687324-2	chr11	95686824	95687824	+	798.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20367.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	4.78340159015195	4.89404204648748	4.81342953326566	4.60313705001272	5.02417949402973	5.21006273434041	0.296042675098862	0.475132266252357	0.821727753368561
Merged-chr11-63908693-4	chr11	63908182	63909182	+	815.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	13602.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.8200015164697	3.69019622369687	3.94076056821039	4.5819016894968	4.68940587699402	4.9827408311267	2.64977837281733	1.44342011517485e-07	9.87698198548262e-06
Merged-chr10-128300813-1	chr10	128300313	128301313	+	557.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-2522.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	3.44617213298392	3.46387173035082	3.48583501411487	3.69741680465175	3.34155760947134	3.50200540158038	0.200142746489997	0.733304303359449	0.932039456283818
Merged-chr3-130795793-2	chr3	130795293	130796293	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-65395.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	4.1334361781251	3.85919669280121	4.49691973159626	4.01157831307643	3.84545477926487	4.52503474799565	-0.082059130940621	0.8834667817895	0.973362870329156
Merged-chr15-27708015-2	chr15	27707515	27708515	+	818.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26473.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.34836270253976	3.4570803715973	3.91750788905922	3.89437202277385	3.87768646848594	3.66545601951471	-0.446185013797309	0.470818167411555	0.81976685166002
Merged-chr14-103034270-4	chr14	103033787	103034787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-484.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	5.32963459273316	4.94954751379023	4.90114601167999	5.73055643888685	5.64936859068436	5.36661929510259	1.00873437874738	0.00712960690552556	0.0792043166081403
Merged-chr1-149959364-2	chr1	149958864	149959864	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1926.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.37939574702202	6.72465280145	6.05998986404908	6.74279741668164	6.73134169191151	6.59424737515243	0.417428706413741	0.168501960069167	0.545149931701671
Merged-chr7-123397573-4	chr7	123397057	123398057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10260.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	6.85265612391308	6.93651383444986	7.12768840979823	7.14172739446454	6.93568673555897	6.87891019188644	0.0332432883144026	0.895724955353452	0.975665889379756
Merged-chr11-87204996-2	chr11	87204496	87205496	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 19 of 23)	L1MB7|LINE|L1	77921.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	2.98894619996915	3.27269359106275	2.91359174858203	3.0051534889838	3.13108028675506	3.11070467324818	0.0423569092966883	0.950825720651581	0.988501616477738
Merged-chr14-54685676-2	chr14	54685174	54686174	+	826.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	-497.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	5.8437079920708	5.71956616871423	5.3677536419858	5.70240309063842	6.00822998522162	5.49786607522177	0.176278310015799	0.619434507971602	0.889785897704524
Merged-chr6-125040457-3	chr6	125039955	125040955	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	607.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	8.01169737939358	8.15520438152549	7.7575980146924	8.26126674958496	8.74151672732565	8.40096356700832	0.697502121967122	0.00498807779094495	0.0611223189093883
Merged-chr5-123017427-2	chr5	123016927	123017927	+	809.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	2353.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	3.5764583975488	3.57489249183794	3.28202988794239	3.37985896074977	3.31606083247297	3.57956193219838	-0.254411216914778	0.674922421150882	0.911893234052489
Merged-chr9-100734253-4	chr9	100733772	100734772	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 3 of 33)	intron (NM_009282, intron 3 of 33)	90824.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	4.99574988169785	5.21062711428799	4.80071340451422	4.88664310463767	4.75274556591713	5.36540249315602	-0.0103493184162904	0.980431040384812	0.995512982807197
Merged-chr5-36530536-4	chr5	36529994	36530994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113364, exon 1 of 12)	5' UTR (NM_001113364, exon 1 of 12)	129.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.50534811662423	5.02853037405556	5.36178133578139	5.04325805406115	4.85718195553131	5.14481297411871	-0.622571041188517	0.105604156696537	0.43373861841184
Merged-chr7-16307515-3	chr7	16306977	16307977	+	820.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-2106.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	2.87978557533245	2.55506056646302	2.88818336628118	3.18007693360765	2.802913686006	3.0225722955539	1.10907331815793	0.146814240556426	0.511220259801603
Merged-chr7-45643739-4	chr7	45643243	45644243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172418, intron 7 of 9)	intron (NM_172418, intron 7 of 9)	3766.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	2.76425105492741	2.81278867830292	3.00654409720718	2.80822788410643	2.70316224281792	2.84619831117554	-0.394255580300728	0.583075868436839	0.873907285988058
Merged-chr7-19830928-4	chr7	19830440	19831440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8185.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	6.57518228395449	6.34430403041846	6.4243747257982	6.14169721442231	6.53059391144761	6.1152765234271	-0.263804247932851	0.374548437767846	0.758106266771134
Merged-chr6-51606411-4	chr6	51605906	51606906	+	930.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61113.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.9903284568169	4.68145444155324	5.34294810237483	5.06533878822041	4.98985576726225	5.06845506865753	0.0422608014166747	0.91733121124639	0.981588017376699
Merged-chr2-36271942-3	chr2	36271461	36272461	+	771.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41535.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.69303820404284	5.52053008513999	5.26036460311186	5.33389458217138	5.3343812503018	5.38940616112596	-0.317455570555531	0.35871813528294	0.745080785526968
Merged-chr11-109394972-4	chr11	109394475	109395475	+	877.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 3 of 3)	intron (NM_010303, intron 3 of 3)	-30971.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	5.25654183930821	5.66045765577541	5.15668509051759	4.94570995387637	4.72879736639497	4.93343580762032	-1.08943361222732	0.005142273628313	0.0623638396829424
Merged-chr15-38248051-3	chr15	38247582	38248582	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28879.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	2.28061796456555	2.17478362431627	2.30671607530697	2.51805193765526	2.24444138906298	2.63611208903681	1.42630878691247	0.102923877462792	1
Merged-chr8-123065028-2	chr8	123064528	123065528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-480.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	7.4845875796061	7.53082499852394	7.33413232371008	7.33529643766476	7.25005329199828	7.28893825963484	-0.246414351323715	0.281081327683646	0.679258106235502
Merged-chr1-156010220-3	chr1	156009721	156010721	+	878.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 6 of 6)	MTB|LTR|ERVL-MaLR	24596.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	3.66573486472485	3.7081899310912	3.93895596087617	4.41981689995514	4.90345050648488	4.52385114519324	2.52336892764057	1.01343900193082e-06	5.48641720706961e-05
Merged-chr13-69612445-2	chr13	69611945	69612945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175283)	promoter-TSS (NM_175283)	429.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	6.22392030664936	6.45216792305314	6.22351614896073	6.1275515747758	6.14201546045677	5.72421178323173	-0.477337577250457	0.119542698901057	0.462174002888169
Merged-chr7-122251915-4	chr7	122251426	122252426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32430.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	4.00315878543752	4.09656062450077	4.09867738113838	4.34411360836141	3.72653251566675	4.02305446232313	-0.0333671280565062	0.94977044493021	0.988276257181213
Merged-chr17-35841446-4	chr17	35840909	35841909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010833)	promoter-TSS (NM_001010833)	-89.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	6.58003485608129	6.3166913340562	6.44658556438348	6.35672331114881	6.59572286066133	6.67476547338858	0.152806650942031	0.581356219533118	0.873293766517036
Merged-chr2-150823190-4	chr2	150822688	150823688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 14 of 19)	ORR1F|LTR|ERVL-MaLR	19382.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.30777541898963	6.42729529552051	6.32922952167616	6.25150076129511	6.17105753889463	6.07308374566843	-0.310722288792014	0.260902102884666	0.658521360261207
Merged-chr11-50179093-2	chr11	50178593	50179593	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026543, intron 2 of 6)	B1_Mus2|SINE|Alu	4242.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	3.38230357844878	3.14077581135199	3.15935324844026	3.20544250285588	3.19763742119831	3.23181152566023	-0.102247539786939	0.871628566316845	0.970227816594767
Merged-chr3-53461836-2	chr3	53461336	53462336	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 2 of 6)	intron (NM_172501, intron 2 of 6)	1422.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	6.06816710935822	5.97845029933003	6.04907863178792	6.17013923712676	6.3756545344202	6.48185605577535	0.529161384461536	0.0637774356573041	0.329042216404573
Merged-chr17-49428350-4	chr17	49427852	49428852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028464)	promoter-TSS (NM_028464)	-12.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	6.81935592111633	7.24671997020022	7.1665063380589	7.04854097069856	7.21837837506192	7.02049126961339	0.0212171101290261	0.935326006623745	0.985852245513165
Merged-chr8-126946570-2	chr8	126946070	126947070	+	631.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	-649.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	6.6557919849392	6.64945097226226	6.47250220574323	6.55340986404559	6.67941307825964	6.33742506020035	-0.0937974383901915	0.730317720000855	0.930858074903207
Merged-chr17-73951154-4	chr17	73950636	73951636	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-940.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.95739072114348	6.35237376936041	6.41130442578015	6.37741534698434	6.76633613459939	6.86289067110369	0.700009538263533	0.0225559594563928	0.174870048959828
Merged-chr3-60527102-4	chr3	60526604	60527604	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	MIRc|SINE|MIR	25925.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.46510573673937	7.38232305102528	6.88123794346025	7.56554253350535	8.0807000874304	7.00237726994786	0.528361429933485	0.122262463540392	0.467734026035353
Merged-chr2-32966905-4	chr2	32966384	32967384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3583.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	9.40335477799777	9.8473649507328	9.01058085322471	9.1476830734524	9.58914535372612	8.94762600190437	-0.283700863194391	0.329668243790869	0.721455791124277
Merged-chr9-107541549-2	chr9	107541049	107542049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018879)	promoter-TSS (NM_018879)	316.0	NM_019720	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	4.26159704958495	4.1973765577176	4.2120063785936	4.19346644674328	4.13199265720354	4.27970743980436	-0.0742964434365504	0.87154289290932	0.970223306350909
Merged-chr8-107436480-5	chr8	107435997	107436997	+	912.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	99.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	7.82547339352969	8.36988397841124	7.69969009935642	8.05437242474812	8.22339355365632	7.73750534344907	0.026925430593907	0.923975887160348	0.982833948467092
Merged-chr19-3323321-4	chr19	3322820	3323820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	19.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	7.72314596863886	8.04533689787923	8.02051419197949	7.8492537783036	8.08121535027039	8.0265049316615	0.0769844229958921	0.738047590110798	0.933858424870961
Merged-chr18-6774854-4	chr18	6774333	6775333	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	9666.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	3.22403998215327	3.22504614917332	3.19282245619087	3.27770273132488	3.27177920268052	3.37739734480883	0.375667842018209	0.539754404157816	0.856100794415668
Merged-chr2-84482040-4	chr2	84481536	84482536	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-5261.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.913747346812	4.5486798463745	4.30813684930148	4.78570877283167	5.15699480772199	4.66156544000023	0.614828809181422	0.186109942153062	0.57061089624098
Merged-chr2-12084583-4	chr2	12084130	12085130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216616.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.34264539499832	4.34492422012584	4.09291093891262	4.15137250949474	4.43959403006147	4.11264222012652	-0.0494233582529556	0.918171492174651	0.981747877135909
Merged-chr2-156866156-2	chr2	156865656	156866656	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 2 of 3)	intron (NM_026124, intron 2 of 3)	3034.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	4.50790899740804	4.34402028638733	4.37958569054826	4.211353074676	4.32285790814698	4.60735063549905	-0.0821181627986255	0.856268386906372	0.966439022119812
Merged-chr14-45049346-2	chr14	45048846	45049846	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61235.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	6.791311702563	6.88572752805753	6.79469276892104	6.74079625250424	6.87084313264161	7.14629394543103	0.149532429787004	0.565331600794989	0.866599059240356
Merged-chr2-164864080-2	chr2	164863580	164864580	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6372.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	3.23894633286519	3.02516775301176	3.56986910430336	3.44498845690585	3.20023738622924	3.48741617909733	0.349004039754002	0.596607427462	0.880014728054069
Merged-chr5-113622031-2	chr5	113621531	113622531	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	B2_Mm1t|SINE|B2	21572.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.57624643316429	4.23431045633297	4.64387146445791	4.71875462906402	4.60890410494683	4.89180218394679	0.596679345896192	0.172291116768597	0.550850973722543
Merged-chr6-87802653-4	chr6	87802166	87803166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	7091.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	5.56464860729494	5.1647000213043	4.8116331628363	5.19862679616293	5.29963483135249	5.38098573772391	0.124005576737639	0.75796562730312	0.940006510270311
Merged-chr1-171408894-2	chr1	171408425	171409425	+	968.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-2388.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	4.58685565537789	4.7615776288409	5.07044443225626	5.02448580075767	4.67210210276089	5.31246186533139	0.451176400678636	0.301040616561003	0.697704518489441
Merged-chr12-3898067-2	chr12	3897567	3898567	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 7 of 17)	B4A|SINE|B4	6323.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.03885799374177	3.33301822157195	3.62643646006113	3.41625311505408	3.18385524951791	3.44266633196658	0.00131136857864895	0.998417013384093	0.999665481732462
Merged-chr5-147430193-4	chr5	147429762	147430762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359433, exon 1 of 20)	5' UTR (NM_001359433, exon 1 of 20)	106.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	8.15280601967618	7.98647633551228	7.93833818197995	8.08846350153063	7.69252050955172	7.98694687330555	-0.144634753673614	0.53631162697886	0.85392789486322
Merged-chr1-190911096-3	chr1	190910617	190911617	+	974.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	653.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.77462541273778	6.98286111163835	6.76850079502454	6.35060744511479	6.45789834553775	6.3382760616648	-0.733944376386443	0.00530062099993177	0.0637085182958721
Merged-chr18-60710902-3	chr18	60710418	60711418	+	957.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16648.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.3560056033242	4.30001103828247	4.29506551689478	4.08250474735025	3.78373886754141	4.03795800934432	-1.01207291909042	0.0377857537272777	0.240361754164474
Merged-chr2-38511425-2	chr2	38510925	38511925	+	815.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	-272.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.63035068621662	4.2789668300506	4.47236825843803	4.06785320175688	3.97866237554346	4.28401856594102	-0.984423695000689	0.0387152564373726	0.243991445704832
Merged-chr2-154677200-4	chr2	154676718	154677718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20192.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	7.01902700177599	7.32984570797778	6.97176009175805	7.01621121882145	7.21312994774457	7.12303005885252	-0.0025843669710962	0.991901638994025	0.998351393644539
Merged-chr5-115530658-4	chr5	115530135	115531135	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23959.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.26775978206816	6.34114139862546	6.56358633698995	6.32820290571445	6.27292988851669	6.1953406110746	-0.196272814533283	0.481639114442991	0.825159653544888
Merged-chr4-99116085-4	chr4	99115603	99116603	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	4812.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	4.30668016686519	4.11706218443772	4.21533121454187	4.23989362942727	4.22587397937723	4.612082673347	0.389529709971073	0.408584828616759	0.782163677806636
Merged-chr17-33630323-2	chr17	33629823	33630823	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_034153, intron 3 of 6)	intron (NR_034153, intron 3 of 6)	1231.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	4.56857865715286	4.45825125643329	4.61043820600684	4.403334371828	4.39746126513427	4.55704187794468	-0.238017989227368	0.576704790856262	0.871688505677889
Merged-chr10-75773465-4	chr10	75772939	75773939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-65.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	5.36106784228325	5.70349560388557	5.33866206334566	5.39719654655522	5.35957487451	5.16706335358495	-0.32884117205197	0.354329862931454	0.74154840065609
Merged-chr2-58802665-4	chr2	58802185	58803185	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47501.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.56614053652765	4.96709151295389	5.3001251343345	4.90708958198452	5.18860526756752	4.75192533667614	0.00186157245128175	0.996642488733595	0.999127275997073
Merged-chr16-87709512-2	chr16	87709012	87710012	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	10558.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.06041954500767	3.14195887072464	3.56772397673373	3.39789986126314	3.1574740135796	3.26892634101247	0.0360450826758193	0.956570506437226	0.989887454023164
Merged-chr10-17775690-2	chr10	17775190	17776190	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20529.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.44381527634949	4.4904417740987	4.52707878169728	4.43756768630285	4.619388110677	4.82121743146108	0.351020493745737	0.411575584305278	0.783993055982259
Merged-chr2-59616112-4	chr2	59615631	59616631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4089.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	6.70102519480559	6.81434845879854	6.46195268433212	6.57124109434331	6.77485952172789	6.13938602548655	-0.217273753098099	0.477092155433881	0.82311231975248
Merged-chr11-68871952-4	chr11	68871464	68872464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16589.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	5.71060721755082	5.85410298840077	5.92601860488679	5.4146013834017	5.17017076834092	5.21502552586617	-1.06186032061571	0.00145305866280981	0.0241522383569874
Merged-chr18-5945180-4	chr18	5944665	5945665	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190933.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	5.54844270001481	5.51023979296771	5.58105230474653	4.37990501201271	4.49979614213197	4.65779977437865	-2.27726988921355	6.44162492640276e-09	6.11168445696831e-07
Merged-chr5-107967440-2	chr5	107966940	107967940	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	19637.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.36725609158043	5.82619709916681	5.45336756540138	5.34642752453594	5.46406819890199	5.48695551502122	-0.266181908517525	0.44761963760615	0.806548958484392
Merged-chr11-73323065-2	chr11	73322565	73323565	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	1572.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	4.24255961728773	4.19095370140832	3.88580521120727	3.86488778388024	4.01828213330476	3.95664791461938	-0.510040479366355	0.313804969263321	0.70819321623169
Merged-chr19-3929642-4	chr19	3929139	3930139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	77.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	7.65330796875812	7.63428230525727	7.71848332028216	7.69663755190417	7.69692774476588	7.87359857798152	0.125791990786361	0.565027302915668	0.866552670637515
Merged-chr5-143628880-1	chr5	143628380	143629380	+	551.0	f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	B1_Mur4|SINE|Alu	6433.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	2.90388429989849	2.85434931526449	2.87972335870911	2.85139814970952	2.65322975923637	3.12475015720526	0.0223989817506847	0.975632300756989	0.994540154302743
Merged-chr15-99333158-4	chr15	99332662	99333662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	29878.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	6.43986656991731	6.63171080236271	6.80690607552717	6.41126055951639	6.73023495521473	6.80770847129696	0.0495039841717104	0.860579423532124	0.967588655430938
Merged-chr3-32510544-4	chr3	32510056	32511056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144519)	promoter-TSS (NM_144519)	6.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	7.49496060078516	7.31972857927644	7.0556564141326	7.518470164264	7.06530764143175	7.15322970225845	-0.0716213476594061	0.791736433621908	0.949809355728628
Merged-chr1-171222588-4	chr1	171222096	171223096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-82.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	6.69182822195921	5.96663955103214	5.90471422481943	7.03136653171481	6.65882158679406	6.72302053527148	0.896221408890138	0.0100938225820406	0.101035372977591
Merged-chr1-58715567-2	chr1	58715067	58716067	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	2281.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.11972306697011	5.36653788255385	5.70943301930137	5.47280345747832	5.37668802566067	5.51174888127638	0.0831491688449554	0.818565413224477	0.95699419580147
Merged-chr18-80319375-4	chr18	80318875	80319875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	44879.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	5.02439282279044	4.53480430144603	4.95829991725687	4.78571666163249	4.8260964508948	4.50909491314359	-0.296998584837625	0.493324902608817	0.831208279358962
Merged-chr8-71299896-2	chr8	71299434	71300434	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	27220.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.05774164351355	4.15495125279502	3.93647239734735	4.19036464063834	3.9074899640519	3.90247422953434	-0.148001814625581	0.768806304008257	0.942938518084948
Merged-chr6-124812087-2	chr6	124811587	124812587	+	844.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 4 of 6)	intron (NM_009415, intron 4 of 6)	2209.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	3.16453455989779	2.92364159397681	3.40462412758339	3.08878994057025	3.19259257737038	3.31697072678249	0.116959114175566	0.861948724800836	0.967996224966109
Merged-chr5-3491989-3	chr5	3491497	3492497	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51836.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.80597508326954	5.43160959157798	5.92822835329791	5.33323503868066	4.92061228707662	5.38054620458747	-0.994991931756599	0.00806820559132551	0.0865685687740829
Merged-chr12-87391528-3	chr12	87391023	87392023	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.13755233591749	2.83821705712201	3.26084366712829	3.16866632866328	2.88114737646037	3.10815231438113	-0.137359728834099	0.844706169722698	0.96373428957366
Merged-chr11-77347504-2	chr11	77347004	77348004	+	645.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-776.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.80368534564612	4.6328875927564	4.77877559573287	5.09967555317955	5.18832124899768	5.28885389589539	0.986035278600628	0.00904144097386491	0.0938523229233223
Merged-chr12-35641132-4	chr12	35640620	35641620	+	964.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	45184.0	NR_045051	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	3.0455308020262	3.45060780720081	3.07509877278328	3.33880206013553	3.03173047202801	3.20969637717748	-0.050369467940026	0.941049647020275	0.986888338850358
Merged-chr2-174077918-4	chr2	174077412	174078412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	861.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	5.88977722168636	5.72479433383849	5.94913086940713	6.2425728963175	5.81117021462435	5.89085617806212	0.249719131610315	0.432616671387406	0.797386699146392
Merged-chr3-89246937-3	chr3	89246455	89247455	+	587.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310625, intron 2 of 4)	intron (NM_001310625, intron 2 of 4)	482.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	5.64724194440459	5.42857077970223	5.34521515036605	5.59396534338112	5.36137164988551	5.37744095843111	-0.0736257714025011	0.829531126404831	0.960114979147503
Merged-chr7-141478257-2	chr7	141477757	141478757	+	822.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	1877.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	3.33372331610833	3.19299932283982	3.46108692167977	3.10035544615845	3.1270790943139	3.31893549435595	-0.613733757184502	0.333270346344235	0.724200304273483
Merged-chr1-159234228-2	chr1	159233728	159234728	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	B1_Mus1|SINE|Alu	2028.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	4.65545308319646	4.54251774559096	4.58911033592668	4.53604633134311	4.2187413730872	4.61545625147369	-0.349370398584426	0.426879653312891	0.793904265858508
Merged-chr11-49755433-3	chr11	49754933	49755933	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38722.0	NM_013529	14584.0	Mm.24402	NM_013529	ENSMUSG00000020363	Gfpt2	AI480523|GFAT2	glutamine fructose-6-phosphate transaminase 2	protein-coding	3.42202594128281	3.33413947837362	3.22931841839606	3.38885502756705	3.1669490995706	3.30191569391235	-0.196115248131263	0.75120010724747	0.937751984454991
Merged-chr11-69516854-3	chr11	69516347	69517347	+	700.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 8 of 85)	intron (NM_001081330, intron 8 of 85)	32261.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	4.65264034915284	4.92192162460689	4.90747866744859	4.90754057804542	4.8335775902786	4.93655119865335	0.132445320119202	0.73488069006334	0.932617455907478
Merged-chr18-33213958-4	chr18	33213452	33214452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-90.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	6.02384380151932	6.08806273463117	5.84793583443864	5.90197865693881	6.10565773897572	5.77863869710252	-0.0870978499130343	0.776611968736183	0.944890351789015
Merged-chr3-146108193-4	chr3	146107705	146108705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172864)	promoter-TSS (NM_172864)	-169.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	5.30910185174287	5.21936911383727	5.09770718600547	4.75931739240414	5.11475222822781	4.90828957048279	-0.569351762324599	0.135789882108679	0.492537249803792
Merged-chr18-30160452-3	chr18	30159937	30160937	+	962.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112428.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	3.62953576748805	3.4691782262432	3.44228531250435	3.35511925757116	3.12847876113855	3.15996758053296	-1.20267291995929	0.0546524718369263	0.300245799327015
Merged-chr18-84293719-4	chr18	84293205	84294205	+	926.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	205547.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	6.51849821515275	6.9199546484301	6.50298398748691	6.93046663417618	7.15171011560958	6.59954819221778	0.395474116877962	0.183922561350641	0.567396873975387
Merged-chr2-73386011-1	chr2	73385511	73386511	+	673.0	f0_balb.idr	intron (NM_001276444, intron 1 of 15)	intron (NM_001276444, intron 1 of 15)	469.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	4.62194694070244	4.91991276749552	4.85983550603438	4.84182182430597	5.30019309584862	5.26077409342213	0.746347009224138	0.0642785473748483	0.330363398151031
Merged-chr5-100644050-4	chr5	100643521	100644521	+	817.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30235.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.7436386169748	3.48944247614512	3.47713984957647	4.6190179968172	4.43980245425367	4.17673693388615	2.6198125843817	5.38326427959959e-06	0.00023600139840723
Merged-chr7-109486485-4	chr7	109485972	109486972	+	821.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181853, intron 1 of 19)	intron (NM_181853, intron 1 of 19)	7266.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	2.87312506066715	2.96251212869255	3.02966481633727	2.99518311557418	3.12627099542814	3.37628707277654	0.971271724568703	0.152822998156808	0.521279660188229
Merged-chr1-88221252-5	chr1	88220890	88221890	+	662.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5630.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.62874000713407	5.2240755926857	4.84603004495023	4.49409103719795	4.83689291660247	4.87455182408108	-0.411696935728022	0.349901188044015	0.73793729545208
Merged-chr4-42949776-4	chr4	42949282	42950282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-85.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	8.08485944885842	7.96300925032826	7.69292849478858	8.07704371789008	7.89043201200738	8.07134564205841	0.117015784504326	0.612733513207492	0.88689994375968
Merged-chr9-104604888-2	chr9	104604372	104605372	+	736.166626	f0_balb.idr|f1_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	35389.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.41317600570358	3.38264108067234	3.11711675034097	2.92753700452806	2.71868533613445	3.00594980139186	-2.11223409974998	0.00415282059950638	0.0533994585757575
Merged-chr13-112116217-4	chr13	112115707	112116707	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172244.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.27298823232227	3.33240414252416	3.34538842494451	2.9890595122188	2.90345620915667	3.19468055071497	-1.29430083944865	0.0515595533876056	0.28955909820201
Merged-chr1-191087147-4	chr1	191086633	191087633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11281.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.41319004437228	7.3025200608113	7.21661339538901	7.45434051003363	7.54428808850716	7.23745155951714	0.161331553687586	0.499257832699429	0.834382697502491
Merged-chr19-37511093-4	chr19	37510592	37511592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39326.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.53904024815508	5.38470411168758	5.55717651902874	5.70465153592757	5.90658373620153	6.07626296138572	0.746939816581119	0.0207338362461952	0.165346084567128
Merged-chr13-52579691-4	chr13	52579176	52580176	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-3761.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.15939046719241	5.97862904212117	6.17009256571557	6.09103909087932	5.83088258144254	5.94297008874436	-0.252329759335141	0.396182646390122	0.773403848555492
Merged-chr16-49843944-2	chr16	49843444	49844444	+	720.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-11710.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.13823322609879	3.15843020317568	3.03826699555891	3.00476628121203	2.96984413275771	3.11048818769279	-0.41001862831503	0.533082392970545	0.852178051416747
Merged-chr8-70647017-4	chr8	70646534	70647534	+	870.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12704.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	5.63639885149822	5.24053577189607	5.05757833972629	6.40333664791178	6.64967748784896	5.68975846579455	1.72289538089156	2.20796040070046e-05	0.000793606777630599
Merged-chr11-46842448-4	chr11	46841949	46842949	+	958.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 8 of 8)	(A)n|Simple_repeat|Simple_repeat	31650.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.78190977001866	5.63861670670313	5.85036760706432	5.31976649361497	5.399924825439	5.43615194529913	-0.697206234117551	0.0317079666133605	0.215957803549521
Merged-chr2-3475059-4	chr2	3474560	3475560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-74.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	7.52781109937953	7.80295130699951	7.45953304234175	7.64430662418214	7.75138962277682	7.49551319114024	0.0415952955419963	0.862274018947769	0.967996224966109
Merged-chr14-118950291-3	chr14	118949779	118950779	+	789.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	12347.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	3.63416141874468	3.42124687150706	3.54560906859684	3.31978775089921	3.14224769503122	3.5105653158621	-0.819081657363272	0.182948579363841	0.565944880351939
Merged-chr2-160873081-4	chr2	160872571	160873571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177263)	promoter-TSS (NM_177263)	-81.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	6.63191086306331	6.36929337392252	6.4447826915589	6.59745575008874	6.19751736682845	6.18330432205317	-0.236913473434701	0.420417438105545	0.789663525731064
Merged-chr1-85246387-1	chr1	85245887	85246887	+	594.666687	f1_balb.idr	TTS (NM_001037909)	TTS (NM_001037909)	24179.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.56982411093602	2.59545847975224	2.72635324056821	2.44686295994882	2.59937125462883	2.7986380330179	-0.0581276454782758	0.940539517062181	1
Merged-chr5-143679779-4	chr5	143679284	143680284	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	28543.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	3.60345117873974	3.31760691017454	3.32453741952741	3.07836587636682	3.24630043011598	3.55720401931599	-0.470232992613399	0.469508687973266	0.818977178978635
Merged-chr2-104888176-4	chr2	104887697	104888697	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177600, intron 1 of 17)	MIRb|SINE|MIR	1873.0	NM_177600	211936.0	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	3.67290173154063	3.48350344768065	3.56225278499057	3.55962112931826	3.62318628596821	3.63269985129261	0.104596822793196	0.851218479729105	0.965211450762173
Merged-chr4-126162739-4	chr4	126162216	126163216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025856)	promoter-TSS (NM_025856)	-51.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	6.10802327510029	6.24026115325134	6.00120653486089	5.9333152133568	6.007754824557	5.89331233831553	-0.304616470598437	0.297506330034782	0.694173094123388
Merged-chr5-65476029-4	chr5	65475532	65476532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	16803.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	6.18613967109041	6.10957386578394	6.28798927078667	6.3634091958287	6.30975767787449	6.52723688796236	0.342412611782454	0.216796062831573	0.610379873996397
Merged-chr7-27163119-2	chr7	27162619	27163619	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 1 of 4)	intron (NM_001357767, intron 1 of 4)	2609.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	2.80802206346434	2.73147161952157	2.83795216753537	2.84032250372268	2.59503498973402	2.72565705415672	-0.369603772323382	0.615583431023644	0.888073730124794
Merged-chr13-113507873-2	chr13	113507373	113508373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10C|LTR|ERVK	-5029.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.60380811730848	5.28484285529076	5.18087019581196	5.10557843102436	5.23585807837974	5.24546665248456	-0.361955618847227	0.318247215612859	0.712017229928219
Merged-chr9-7874857-2	chr9	7874357	7875357	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1687.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	3.99381063216793	3.85027916639014	3.64030322818585	3.93825977733655	3.91891914090803	4.20875616625138	0.539747748568722	0.310748490278347	0.706022433069834
Merged-chr1-121329526-3	chr1	121328999	121329999	+	913.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178082, intron 1 of 5)	MTEb|LTR|ERVL-MaLR	-1475.0	NM_133748	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	5.34484882870652	5.47538809688194	5.3049139828438	5.30644138387479	5.27981790652509	5.23890269885931	-0.208151200278443	0.540933648614967	0.856582937501506
Merged-chr11-116868834-2	chr11	116868378	116869378	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	ID_B1|SINE|B4	14878.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	7.53275751394934	7.92225508692862	7.48561208184149	7.47416651293191	7.81235667972556	7.0094822259669	-0.262438834260304	0.381626038352435	0.763233731504131
Merged-chr10-88683097-4	chr10	88682579	88683579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-56.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	8.37462044236399	8.17768991698168	7.78511480609769	8.28881572443653	8.4689581525251	7.893731774666	0.145946939847859	0.591068910568946	0.877366596093565
Merged-chr2-91202941-4	chr2	91202425	91203425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007387)	promoter-TSS (NM_007387)	13.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	7.68182653860961	7.80981723858468	7.77543456909083	7.72161572831711	7.65866634391958	7.90366324814805	0.00530425371447601	0.980928526053245	0.995645370999113
Merged-chr10-17589322-4	chr10	17588823	17589823	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133905.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.7971178037191	3.89055583287395	4.02823509688563	3.68795911029939	3.85657651108764	4.05041745104652	-0.111148543502834	0.83221195413286	0.960612217066934
Merged-chr1-162697395-2	chr1	162696895	162697895	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 19 of 34)	intron (NM_001081290, intron 19 of 34)	-39176.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	2.68139940905722	2.74850772082549	2.80186679883338	2.88307005958659	2.83500074571481	3.21698063474377	1.19215457073065	0.102426247560015	0.426838443780925
Merged-chr1-155974195-2	chr1	155973695	155974695	+	796.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-940.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	5.69673900474422	6.26637387341306	6.12887205991638	6.17519761046148	6.50492869876901	6.23141663607505	0.445583552431319	0.168578756514551	0.545184755223438
Merged-chr4-98396071-4	chr4	98395581	98396581	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 1 of 19)	CpG	255.0	NM_172696	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	4.62522925762705	4.44757956288236	4.37694262789603	3.96779081590985	3.42213976996169	3.97644490169557	-2.0351437374899	0.000321572846635193	0.00737525728302679
Merged-chr18-56701440-2	chr18	56700940	56701940	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6373.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.50929775327299	3.36238390700376	3.53203791831408	3.89199093199107	3.54432216812677	3.90785044007674	1.10834449668253	0.0550605647954659	0.301512305067531
Merged-chr2-158306355-4	chr2	158305849	158306849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-144.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	6.56770327538492	6.50837541835261	6.10994259728369	7.28572959206073	7.23019324760264	6.61434161776413	1.03476734882157	0.00100686859307924	0.0181184087138705
Merged-chr15-86272418-3	chr15	86271954	86272954	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	MTD|LTR|ERVL-MaLR	-5221.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.14448973744305	7.48647002367333	6.75719135697686	6.7023876353729	6.93823867775123	6.59099211981473	-0.632403307989525	0.035178561168579	0.230154479658555
Merged-chr10-17767435-1	chr10	17766935	17767935	+	615.0	f1_c57bl6.idr	Intergenic	Intergenic	-28784.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.09947769605521	4.61026338441627	4.55359635933748	3.58385761789278	3.53130588936582	3.71000163915079	-2.66962228009832	2.95543349140957e-06	0.000140043115007521
Merged-chr4-139191719-4	chr4	139191245	139192245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1154.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.8925301595799	8.08701053402162	7.61185413489895	7.92854158031146	8.3728098699895	7.98882069258931	0.330125519054856	0.200273922963956	0.589262190319174
Merged-chr3-79128011-4	chr3	79127526	79128526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16861.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.82718768604304	6.79572112877364	6.48499782439286	6.98909920368628	7.15762458386279	6.95302834638728	0.491712330998427	0.0601037261923815	0.317350999539903
Merged-chr2-130840065-4	chr2	130839609	130840609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311147)	promoter-TSS (NM_001311147)	36.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	4.68948977935545	4.38587909267301	4.85025290194886	4.3330662839317	4.12611977817758	4.2388158379217	-1.06816671019948	0.0208632288202722	0.165996131543049
Merged-chr9-32475204-4	chr9	32474700	32475700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	66252.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.49623517493335	6.27256105497	6.86283931287446	6.1151676227603	6.37855904258593	6.50046580105879	-0.355237673380477	0.251374381426775	0.648833216107931
Merged-chr7-44358521-4	chr7	44358030	44359030	+	873.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034115)	TTS (NM_001034115)	16500.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	3.946511059907	3.6760144921499	4.14209703017935	4.06513353079486	3.88056738365368	3.8274954444073	0.0079578557974027	0.988093546384888	0.99731652667245
Merged-chr3-9696765-4	chr3	9696235	9697235	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-86650.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.13871263902564	2.94506224569741	3.20178919492565	2.85255303244992	2.91277052886655	2.92616784580488	-0.935634863587649	0.17526700319404	0.555058871955914
Merged-chr13-76690872-2	chr13	76690372	76691372	+	727.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 3 of 20)	RMER19C|LTR|ERVK	305911.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.6186529999415	2.31050253906366	2.51275179014907	2.55896605158363	2.46330164687558	2.64980116270867	0.408930335653519	0.615112808631652	1
Merged-chr8-117673690-4	chr8	117673184	117674184	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357272)	promoter-TSS (NM_001357272)	5.0	NM_001357273	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	4.0731468167143	4.01403711120129	3.90566001489327	4.07223508006594	3.89982560848407	3.9243784482656	-0.111310533327942	0.823070892019426	0.958214218900685
Merged-chr2-32363049-4	chr2	32362559	32363559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	49.0	NM_001252536	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	7.27288122770365	7.40574740478721	7.15672263087284	7.29972451857979	7.42237623930935	7.01396254904308	-0.0309011130185493	0.902466686885926	0.977534352809461
Merged-chr1-86154115-3	chr1	86153657	86154657	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-623.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	6.24119914319065	6.68645004207777	6.67639849803288	6.58872925653439	6.77156230582902	6.44242370839248	0.109081877920842	0.708806493273956	0.923765689109074
Merged-chr10-41870268-3	chr10	41869798	41870798	+	654.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-17141.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.07263183907579	3.04571967344335	2.99678580272801	3.16944708340295	2.76412702962912	3.07001163643651	-0.140627669033277	0.841115448647991	0.962841569678474
Merged-chr18-25881896-4	chr18	25881391	25882391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127734.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.95463776429837	3.89140499753894	3.57343970844686	3.66019857025844	3.3945593352275	3.58915427184182	-0.946344511623992	0.100346866509958	0.422447699093208
Merged-chr4-62674080-5	chr4	62673471	62674471	+	924.7800289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310706)	promoter-TSS (NM_001310706)	-3.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.29170614961021	3.23299621607426	3.28798029966722	3.29829463296355	3.06467730573514	3.24581229049437	-0.284499111662541	0.650525987441523	0.902615790875857
Merged-chr9-108203201-4	chr9	108202705	108203705	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12822.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	4.3188157360915	4.63492867797387	4.67538470777893	4.61669486479349	5.02915177673253	4.70220031630143	0.603524751262791	0.167571795081447	0.54353541204292
Merged-chr19-40733567-2	chr19	40733033	40734033	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	73763.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.26141555580051	2.32635711744848	2.44213023220385	2.16514500511988	2.09088639685575	2.45413487160367	-0.695910661226838	0.435744145565158	1
Merged-chr5-112298358-4	chr5	112297871	112298871	+	976.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	21680.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.46426622148176	5.97445173663537	5.29961023605427	5.67823565036363	5.49485840954974	5.0701385248186	-0.331767617487823	0.408662085703676	0.782226990150116
Merged-chr3-95647105-2	chr3	95646605	95647605	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11616.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	3.57806390026514	3.68163183662941	3.638920331512	3.36731765744451	3.3440987561533	3.32575567653254	-1.0938876505374	0.0614007955958042	0.321343317185715
Merged-chr16-38452743-4	chr16	38452228	38453228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007414)	promoter-TSS (NM_007414)	-39.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	7.7739094823264	8.07647724094493	7.77466063810011	8.05362246325875	7.87584404984288	7.92113000523137	0.0917317365079943	0.688280306448994	0.917193226920892
Merged-chr7-104258902-1	chr7	104258402	104259402	+	910.6666869999999	f0_c57.idr	intron (NM_030684, intron 4 of 7)	(TTC)n|Simple_repeat|Simple_repeat	14445.0	NM_030684	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	2.03111147670609	1.84910269082909	1.89510679773513	2.21731709822483	2.05914682545745	2.31334186536792	2.19430091341922	0.0329180199171033	1
Merged-chr15-81085829-2	chr15	81085329	81086329	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	19218.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.52609788429691	4.54341724862696	4.89415005365332	4.43735581890293	4.2328165814922	4.71491130231738	-0.471940191810269	0.300538171795018	0.697311691851564
Merged-chr16-4707333-2	chr16	4706833	4707833	+	895.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023646, exon 12 of 12)	3' UTR (NM_023646, exon 12 of 12)	12023.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	3.41733857993365	3.42871423035131	3.39456895652501	3.32085179252091	3.26068128968019	3.41028268622358	-0.342515814818297	0.564299789237221	0.866276147417766
Merged-chr11-74647540-2	chr11	74647040	74648040	+	603.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1955.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	7.89394216723362	7.54648230600232	7.74136300057233	7.58840879552924	7.51495391644886	7.62898084883407	-0.231026166319233	0.319371593852861	0.713403263927755
Merged-chr8-94343492-3	chr8	94343010	94344010	+	738.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 13 of 24)	intron (NM_019415, intron 13 of 24)	14302.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	2.19072673638634	2.09037524172721	2.13991878557382	2.28391954738068	2.37150408754858	2.41367912249709	1.54346059355122	0.082026707457672	1
Merged-chr14-30595134-1	chr14	30594634	30595634	+	619.0	f1_balb.idr	TTS (NM_001310682)	TTS (NM_001310682)	15176.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.79875066930392	5.91635676698819	5.9989456657195	5.99775715612515	6.29534660198452	6.45132778446393	0.607395832032541	0.0458818396992777	0.270703830227434
Merged-chr2-45108199-2	chr2	45107699	45108699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2078.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.33795488957014	6.97858106476299	7.32951105540203	7.42451379770727	7.43338365388919	7.45011874876645	0.316965576226865	0.194433184815361	0.581726526989917
Merged-chr3-89210316-4	chr3	89209814	89210814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013604, exon 5 of 8)	exon (NM_013604, exon 5 of 8)	4021.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	7.90571773922973	7.64292688577849	7.28840598593564	7.66844038182408	7.75796343096944	7.35769255405929	-0.0479405809624065	0.859872178446191	0.967435965660262
Merged-chr2-167756660-2	chr2	167756160	167757160	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	65483.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.56893175552737	3.39257456755055	3.96125348733263	3.72717636839331	3.61652210787889	3.74685230551887	0.144039098054632	0.805437282598365	0.95390124680061
Merged-chr12-4197271-4	chr12	4196821	4197821	+	932.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 7 of 21)	MTD|LTR|ERVL-MaLR	36644.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	6.35284562519743	6.52991041647606	6.62302080173033	5.86094851721326	5.88362289444851	6.02654669557154	-0.979930284042959	0.000609641599929158	0.012285555400074
Merged-chr6-134921057-2	chr6	134920554	134921554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009875, exon 1 of 3)	exon (NM_009875, exon 1 of 3)	653.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	8.33925745461839	8.45099384297373	8.3792777250511	8.25188653029948	8.74733237255994	8.5550045512526	0.203942089274837	0.374543984316758	0.758106266771134
Merged-chr11-35297589-4	chr11	35297101	35298101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176145.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	3.54012683332561	3.0929871994704	3.332670475616	3.54049728293362	3.27763699709891	3.40495797081717	0.282521136760632	0.658574202833397	0.905014667687917
Merged-chr11-17160436-4	chr11	17159923	17160923	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	1125.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	6.72297260231603	7.33671878001312	6.93807562644413	7.04221492086999	7.28710246089415	6.80041075387767	0.0555107938046486	0.852266560343854	0.965360685449107
Merged-chr7-44554595-3	chr7	44554094	44555094	+	838.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	-629.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	7.25244554283517	7.51592693096928	7.60713494441155	7.18665207710542	7.62181462244473	7.52301570642404	-0.00549779399988315	0.98299099782399	0.996200895077944
Merged-chr6-47176204-4	chr6	47175710	47176710	+	877.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68186.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.83604098395839	3.73823109385235	3.81416526493116	3.48517387539786	3.42848821026148	3.62874262763765	-1.00496917200237	0.0705534176328557	0.34813073151629
Merged-chr7-131362812-4	chr7	131362299	131363299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026655)	promoter-TSS (NM_026655)	-73.0	NR_152380	68277.0	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	5.51962119563164	5.67158517990624	5.91877250322553	5.54320569113873	5.13923675128664	5.41690474478122	-0.636275222866066	0.0716421340964755	0.351113128395543
Merged-chr12-75855340-3	chr12	75854847	75855847	+	755.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	37029.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	3.32650561419695	3.241571356691	3.35586656693249	3.60675611625649	3.15012413216467	3.25388526703626	0.17657725044652	0.781336842587941	0.946174647340264
Merged-chr13-34792176-4	chr13	34791648	34792648	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52506.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.71203867130408	4.72258897616008	4.29337606784189	4.14339546225483	4.37376584396235	4.16511016759158	-0.922926767948772	0.0504206196190544	0.285731724937838
Merged-chr1-161951214-2	chr1	161950713	161951713	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 5 of 6)	intron (NM_001204904, intron 5 of 6)	17935.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	3.35761232252494	3.53728834630374	3.4073734067006	3.14309009761484	2.93089882515175	3.13402100248402	-1.61325842595412	0.0143705911886689	0.128985879783716
Merged-chr8-70898216-4	chr8	70897717	70898717	+	904.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-774.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	6.0402242113404	6.87891129410593	6.76469568895055	6.47348679286048	7.12470097519905	6.7783483436731	0.331174820381526	0.34717997850993	0.735329421469588
Merged-chr11-70686682-2	chr11	70686182	70687182	+	886.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	1423.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	4.90732516077252	4.92576465507438	5.26035480009979	5.14452038832315	5.25959073807305	5.293087323887	0.42672034855238	0.248410478590825	0.645525893272497
Merged-chr2-163601503-2	chr2	163601011	163602011	+	583.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-803.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	4.36884441182042	3.94282362686011	3.79481072794671	3.81659323549969	3.84843088263045	3.63821972309483	-0.887650898435403	0.112725264306115	0.448425976142792
Merged-chr12-87471529-2	chr12	87471029	87472029	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	intron (NM_025507, intron 1 of 13)	770.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	6.1698502417706	6.72999527235285	6.25286676266491	6.53468306111005	6.6741419027976	6.35460629061296	0.187697000641469	0.544060107030076	0.857551302506722
Merged-chr17-74867028-4	chr17	74866540	74867540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138489.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	5.86600472161701	5.65996902810068	5.00026095559138	6.1790957723743	6.11612253804802	5.6132486349899	0.761587534669177	0.0626665375446988	0.325571756744462
Merged-chr4-149665203-4	chr4	149664697	149665697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-1881.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.23350619834691	5.08320534455133	5.02142861889542	5.23238277320117	5.28192235223749	5.22469790081728	0.260903192365812	0.461970342456701	0.815107818354545
Merged-chr5-100588331-4	chr5	100587826	100588826	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16121.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	6.55151651330337	6.42405305723446	6.5784196921468	6.79365395631693	7.15175151000117	7.17072707476103	0.831726609377177	0.00176020970923383	0.0280152122199558
Merged-chr1-131915878-4	chr1	131915360	131916360	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	5402.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	6.44822176982103	6.40797395977907	6.25412913631986	6.19377392286447	6.37211176736261	6.18804583911559	-0.194175879046596	0.48462688773458	0.826994448591038
Merged-chr11-89985411-4	chr11	89984899	89985899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316372, intron 4 of 4)	intron (NM_001316372, intron 4 of 4)	17495.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	4.61944720921031	5.02091329136449	4.68511549662905	4.11690916263481	4.20961367115299	4.67430549151582	-1.10143671669187	0.0197962749844803	0.160312257801327
Merged-chr13-37855542-3	chr13	37855050	37856050	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	28157.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.59451829197754	5.72797120388925	5.86082907591506	5.78663238193242	5.96845942152634	5.45472403422663	0.0778482447765649	0.816829305937036	0.956754861188725
Merged-chr16-16146821-4	chr16	16146309	16147309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146068)	promoter-TSS (NM_146068)	42.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	4.62871084583992	4.48212341402329	4.65716118350118	4.56386795165274	4.50062179907321	4.6044403917163	-0.0841582324316107	0.839923432660128	0.962784121274377
Merged-chr5-21045672-4	chr5	21045186	21046186	+	930.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10225.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.56853678000206	4.66170206219158	4.55877257152724	5.01730783610991	4.78518368032952	4.86578637949296	0.670842368259982	0.0946704550788358	0.410136490273995
Merged-chr12-28751331-1	chr12	28750831	28751831	+	1000.0	f1_balb.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	-497.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	5.98687683026509	6.62120666285658	6.66325053929503	7.02904652124376	7.03260995753217	6.82998165916513	0.807485057336822	0.00856517510658692	0.09041991133528
Merged-chr8-84256694-2	chr8	84256204	84257204	+	656.0	f0_c57.idr|f1_balb.idr	intron (NM_026423, intron 1 of 4)	intron (NM_026423, intron 1 of 4)	620.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	5.8449031922628	5.62494380413194	5.5801044632447	5.49831777836892	5.18402570575596	5.37591735547903	-0.648249898488503	0.0563895335705178	0.306090437036705
Merged-chr8-84986803-1	chr8	84986303	84987303	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-3792.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	7.00174936399226	6.69694204754021	6.19426119868046	6.2889526097614	6.49744559360053	6.44187672351501	-0.434442993487162	0.171959672369857	0.550436900592833
Merged-chr1-36927790-4	chr1	36927290	36928290	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	11737.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.86254306591114	4.91409335493609	4.72436843026431	4.81615026807211	4.97152323282302	4.94360130155454	0.156862191576936	0.684344848142275	0.915853993305035
Merged-chr3-36861094-2	chr3	36860594	36861594	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2012.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	3.82063814249279	3.67717634887939	3.89265598639216	3.5959613873781	3.37539981514343	3.81817255062499	-0.673902458566234	0.238607034387298	0.6353487829146
Merged-chr11-119955658-4	chr11	119955145	119956145	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	12553.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	5.15329557400799	5.28883439708867	5.18362254441949	5.18177703893298	4.98387766080194	5.18192777487624	-0.207435933101367	0.563138036170943	0.865817708624535
Merged-chr8-46769538-4	chr8	46769068	46770068	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	29823.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.87941282199187	6.78587220907504	6.56515980181277	6.62723324409786	6.69588170110592	6.6416756084562	-0.159660697955796	0.539118510876938	0.85576064580405
Merged-chr11-72694145-2	chr11	72693662	72694662	+	654.75	f0_balb.idr|f0_c57.idr	intron (NM_009671, intron 1 of 24)	ORR1C2|LTR|ERVL-MaLR	4160.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	4.36773780243259	4.62797687684186	4.68754424783794	4.56370568098237	4.61324878441728	4.86149152125935	0.275731468078367	0.519251753723932	0.845725113262126
Merged-chr7-95791062-4	chr7	95790568	95791568	+	927.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-380176.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	2.96657082034431	2.85696670184624	3.20934640740393	2.70999794548063	2.85069320809948	2.69243952325865	-1.27419423869139	0.0904438352395052	0.399981431974954
Merged-chr13-20165503-2	chr13	20165003	20166003	+	711.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	74996.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.33855462507499	3.44196977445698	3.59307069846184	3.47713954041204	3.07485849264992	3.61235633835358	-0.213474526071883	0.73970113289432	0.934245371298156
Merged-chr6-123123321-4	chr6	123122842	123123842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	26.0	NM_001170333	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	6.0424924625845	6.08101483509863	6.23968502648289	5.86521259333913	6.09575743805869	6.26066814389283	-0.0670373074987071	0.82250294515087	0.958097562158607
Merged-chr14-76429076-4	chr14	76428570	76429570	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	13249.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	4.13867209382379	4.22628498134724	3.9107561148682	3.7899706498312	3.5199808969259	3.93054019970796	-1.12018960647041	0.03884741861558	0.244380884606032
Merged-chr10-95684902-4	chr10	95684394	95685394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-120748.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	6.45467307134683	6.11709086119707	5.96639004818599	6.05487143433815	6.38261022708601	5.67332746277517	-0.197706704293357	0.571018385121584	0.869331965951745
Merged-chr13-81370229-2	chr13	81369729	81370729	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	262915.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.03777942284285	3.01655019202714	3.13938151491764	3.03434269727607	3.05213667322883	3.03640792817229	-0.0937413944111125	0.886109948723387	0.973686501153869
Merged-chr10-117876675-4	chr10	117876163	117877163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30689.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.91418998410245	8.15170738291827	7.64226729878803	7.89356928728144	8.14717765940728	7.62025847208102	-0.0186052330643322	0.943971668503665	0.987495247303971
Merged-chr15-64191458-4	chr15	64190965	64191965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	121208.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.77778527425527	5.91828397700412	5.50940164780102	5.79128307703043	5.70401308750643	5.96625101963325	0.105430941081024	0.745505213537879	0.936177103310491
Merged-chr2-91967491-1	chr2	91966991	91967991	+	897.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-3928.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.53259957537398	5.32270723143303	5.10571219302941	5.48014753386993	5.11264407720245	5.43191479302968	0.00437912088953829	0.990556098686229	0.997892660866058
Merged-chr10-70287503-4	chr10	70286997	70287997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42221.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.53397238198489	5.46250855163277	5.37664933978115	5.62722982414694	5.62441762796634	5.13093487091148	0.0618023460588617	0.862098253958961	0.967996224966109
Merged-chr9-65827757-4	chr9	65827278	65828278	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172536)	promoter-TSS (NM_172536)	-214.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	6.27478848188107	5.66667642356791	6.20135792212605	5.9738469922274	5.49781979825682	5.68442339518879	-0.600284150163364	0.0923434297190422	0.404810710713981
Merged-chr1-39504411-3	chr1	39503912	39504912	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25657.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	3.48409859234065	3.55056684147457	3.48802855879699	3.17607059051639	3.09236970052743	3.33976038920039	-1.26406025205812	0.0415903995270335	0.255041194181252
Merged-chr13-45443238-2	chr13	45442738	45443738	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	53496.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.81363672918166	4.65098636101432	4.59440876634006	4.6437760613393	4.64981744755194	4.61971202966726	-0.132006435414213	0.746034253494294	0.936260355453809
Merged-chr9-45451050-2	chr9	45450550	45451550	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-19818.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.04142240855598	2.06030353548089	2.0352247907555	2.4760471007917	2.29760219243414	2.38815451067381	2.71768009281279	0.00649939889203359	1
Merged-chr12-55302686-4	chr12	55302202	55303202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	65.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	8.31993919308298	8.76941260493767	8.40527964055454	8.48893485874023	8.82520036380077	8.32807673410101	0.0742859441964308	0.768442973157314	0.942871018290895
Merged-chr4-141998825-4	chr4	141998323	141999323	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12828.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	4.87319650847434	4.79099095020141	5.07942191431753	4.8704872581012	5.03176247981496	4.90123759418119	0.0687129233532396	0.858527657142847	0.966933063363181
Merged-chr11-71285358-3	chr11	71284855	71285855	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027858)	promoter-TSS (NR_027858)	-123.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	3.5311328341281	3.52488379201093	3.86997447207017	5.58730772347755	5.66613581630795	5.5078489129264	7.8896714253478	5.67959074067201e-11	7.9560166052161e-09
Merged-chr9-37237617-2	chr9	37237117	37238117	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 8 of 18)	intron (NM_001145960, intron 8 of 18)	18121.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	3.7892826524234	4.06840393281313	4.17936740886626	3.57842846518136	3.3153110237164	3.84093781100231	-1.43938678537347	0.0151095203445484	0.133359575304798
Merged-chr5-139482041-2	chr5	139481541	139482541	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159908, exon 3 of 7)	exon (NM_001159908, exon 3 of 7)	2450.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	2.76163176590191	2.62045051700933	2.97165224670852	2.72503815104992	2.7202709659941	2.8705693785137	-0.0818700409009181	0.911785544530414	0.980182089643468
Merged-chr13-25793218-4	chr13	25792709	25793709	+	953.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173107.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	3.04013951432374	3.08631309209873	3.00505937780052	3.25997515157811	3.30095503598561	3.42367259872186	1.19844672016256	0.062695705587111	0.325597576182484
Merged-chr9-111053468-3	chr9	111053064	111054064	+	693.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	3680.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	2.99041168159566	2.6719280512435	2.93497677418382	2.6954494399967	2.62604717679425	2.88992302630819	-0.697077286478179	0.353062222199311	0.740436687653974
Merged-chr2-6715883-4	chr2	6715396	6716396	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	5766.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.98073624618284	5.80692867504764	5.89307717217026	5.89141360336914	5.64579106067254	6.17078721371916	0.0193842172767952	0.952198552967759	0.989068549972429
Merged-chr12-80260492-4	chr12	80259988	80260988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-107.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.56586933961586	6.69794389132407	6.58157089878582	6.64049885185108	6.45515988105518	6.48201365501762	-0.145495897913532	0.578552194696912	0.872437129840066
Merged-chr11-79146492-4	chr11	79145981	79146981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013571)	promoter-TSS (NM_013571)	-8.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.14144067164892	6.32226040270688	6.08029528678172	6.48986460829194	6.08242425872698	6.11875787920398	0.0895779807625026	0.766536383710086	0.94248431703451
Merged-chr14-60784570-4	chr14	60784082	60785082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040642)	promoter-TSS (NR_040642)	16.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	4.09914553974847	3.72046426528359	4.01132252544167	3.78132055374449	3.44105754624656	3.73530571897377	-0.969125935202948	0.0859634280787419	0.388235178222751
Merged-chr5-64634972-4	chr5	64634485	64635485	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-24286.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.74518866263749	3.72227040276	3.7208884914959	3.62069525540719	3.67809438923126	3.88929466262012	-0.00698109632647311	0.989626329874366	0.997611022725407
Merged-chr4-106910337-4	chr4	106909828	106910828	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	5.05679046661461	4.81606480224584	5.37052279021415	5.27619216417226	5.28420908465714	5.54208450556758	0.567689143276723	0.137686794601264	0.496022981563923
Merged-chr17-13009572-2	chr17	13009072	13010072	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	B2_Mm2|SINE|B2	1733.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	5.16134230417137	5.16831803553469	4.73817340452512	5.53970629484723	5.27699693599257	5.76267364040676	0.957112695979161	0.0150959404778853	0.133301816330668
Merged-chr2-73892143-4	chr2	73891645	73892645	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025093, intron 1 of 14)	CpG	494.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	6.39174825571545	6.69929906112181	6.32752049093863	6.61771002323488	6.41819661283736	6.44578237178322	0.00722988419093757	0.979525364120482	0.995255032086493
Merged-chr10-80389363-4	chr10	80388800	80389800	+	829.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1649.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	3.58342222151208	3.40027570895408	3.91123518749369	3.87671337551753	3.77159057806708	4.15565820750012	0.968374681966514	0.0927567116087227	0.405701265916025
Merged-chr4-93551302-4	chr4	93550810	93551810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215799.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	4.03347138281391	4.15015845702934	4.31949740595919	4.31386591301874	4.5032738576145	4.51128963838514	0.751186956321209	0.101099726657967	0.424050108668016
Merged-chr13-54688212-4	chr13	54687692	54688692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	8.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	8.58715203248875	8.61946121961493	8.11128921350011	8.43548280202577	8.64042557083109	8.09313034238182	-0.0689072202474119	0.792349302710565	0.949929758256028
Merged-chr5-138228270-2	chr5	138227770	138228770	+	767.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	B3|SINE|B2	2366.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	3.99590016258239	3.95134100220578	4.07045059164638	3.31879328481697	3.51700233140067	3.70680999196492	-1.65599349968194	0.00388764098042666	0.0508620802986386
Merged-chr2-166825160-2	chr2	166824660	166825660	+	976.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	19579.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	3.26885368057618	3.28836202563215	3.49867605220764	3.22356390566925	3.11950983999002	3.06247922186027	-0.884558209260518	0.167143504588543	0.542794328855415
Merged-chr13-99186433-4	chr13	99185952	99186952	+	749.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1629.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.80749223178314	6.9092079443117	6.47019811810632	7.37949795866448	7.64279818410167	7.00132519294876	0.945045029772747	0.00124892497983703	0.0214302828953895
Merged-chr13-55063480-3	chr13	55062981	55063981	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121592, intron 6 of 13)	intron (NR_121592, intron 6 of 13)	30925.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	3.5677454310727	3.47937403507564	3.5296831439262	3.63723067781428	3.57460296295806	3.48962492540362	0.163056292779328	0.771997479498846	0.943680976839558
Merged-chr8-61914006-3	chr8	61913530	61914530	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11336.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.06954939835669	5.03304393262289	5.02254093275493	4.77789436314411	5.05711306630064	5.01727820284099	-0.179609270165586	0.63334414789711	0.896018020202716
Merged-chr7-35119767-2	chr7	35119267	35120267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287515, exon 1 of 1)	exon (NM_001287515, exon 1 of 1)	474.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	7.1062615133747	6.76596637073057	6.93222159202456	6.95752402908492	6.56083927698061	7.04333649289792	-0.124915784528384	0.656159159023471	0.904578029757755
Merged-chr12-86950780-4	chr12	86950279	86951279	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3436.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	6.33201064815685	6.80425173644558	5.82536026094778	5.952847236638	5.93714956653079	5.62460085668394	-0.915092931285145	0.0131154579965849	0.121490652339442
Merged-chr17-87312624-1	chr17	87312124	87313124	+	583.0	f1_balb.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	29738.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.81982767731473	4.86376637141609	4.59388061270356	4.39251403117776	4.2788184025344	4.25279645668768	-1.1476867414613	0.0080422497326601	0.0864014868631609
Merged-chr10-7725980-4	chr10	7725475	7726475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011835)	promoter-TSS (NM_011835)	-25.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	6.83687680106866	7.01873414066709	6.98656022896562	7.05553552741077	6.96493027598777	6.94854566059063	0.0650647608350114	0.789228290171687	0.949154090987258
Merged-chr3-18710166-2	chr3	18709666	18710666	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229689.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	3.50994076456685	3.47909703575928	3.58611681403989	3.79027977212895	3.70057421684777	3.65671751721948	0.690094404602226	0.209752226623658	0.601570989687028
Merged-chr11-35297984-2	chr11	35297484	35298484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176528.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	3.58186502473803	3.2998804397072	3.67156851143886	3.69462880495625	3.39031917756232	3.53207051324539	0.0740251080949269	0.901415526965719	0.977240024208116
Merged-chr1-44070365-4	chr1	44069862	44070862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32079.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	6.05666624578882	6.36553330846086	6.24010407004409	6.26536113936036	6.38150851901791	6.08438185532478	0.0520424661226184	0.858683099226963	0.966958496744305
Merged-chr17-46647062-2	chr17	46646562	46647562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	833.0	NM_025302	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	4.90611242238111	5.35351278088723	5.26900991608156	5.22376828443533	5.29324767292338	5.17076141527528	0.0908640523157677	0.807254663366266	0.95453117889869
Merged-chr8-13624968-3	chr8	13624461	13625461	+	969.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	52626.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.12404498986029	5.44527810585036	5.57308894884399	4.54636247327618	4.67678690186116	4.53382046783276	-1.73211580796957	2.30240804855417e-05	0.000824764861301683
Merged-chr16-32078423-2	chr16	32077923	32078923	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	919.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	6.69302105454052	7.01604611115641	6.817504622019	6.8433992004533	7.00613828484573	6.97575364657352	0.142166506895551	0.580024546412103	0.872727119904853
Merged-chr17-28327052-2	chr17	28326552	28327552	+	631.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163820)	TTS (NM_001163820)	-1419.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	4.25239457340343	4.02674611012714	4.39666508313685	3.8020832994099	3.53321117320432	3.9881659403155	-1.38419485965368	0.0107215079487527	0.105538298048008
Merged-chr14-25412236-6	chr14	25411669	25412669	+	770.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47016.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.57768472010529	3.48718096723113	3.58949806224124	3.52352043140691	3.36487623844323	3.38495555297029	-0.462887247814329	0.423433285057676	0.792033749856087
Merged-chr19-47004267-4	chr19	47003744	47004744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10454.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	3.98794248380718	3.59661516322579	3.87099374568079	3.48458269619814	3.0879534974614	3.22458451624781	-2.10660405039296	0.00133831102900822	0.0226337772564463
Merged-chr6-137577012-5	chr6	137576538	137577538	+	630.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-6029.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.23749326576791	3.07005581926543	3.22947045485751	3.16220767185891	3.03637582981742	3.2446488063266	-0.147211463212855	0.818833311451767	0.957113265565834
Merged-chr5-65086712-4	chr5	65086193	65087193	+	889.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-20875.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	3.78901552909696	3.73948689727935	3.60681729647674	3.65401777330651	3.61073316063114	3.93043114692263	0.0403909205843027	0.941432830191205	0.986985070753211
Merged-chr15-82345519-3	chr15	82345003	82346003	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	-543.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	5.1368471511129	4.77088432848857	5.10305994933556	4.75456318537953	4.76563466952505	4.60831552023044	-0.654052487492946	0.106343445720653	0.435356724798233
Merged-chr4-141737001-4	chr4	141736459	141737459	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-9716.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.30458897951442	5.53769357018434	5.55965217479975	4.89414785709573	5.38996361766488	5.27302048479683	-0.513715409725506	0.169150233568488	0.545783024459701
Merged-chr7-143829579-4	chr7	143829053	143830053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007856, intron 1 of 8)	intron (NM_007856, intron 1 of 8)	6386.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	7.18289575318392	7.74197898771183	7.07224023096943	7.31409262997246	7.74558199951258	7.28363722922397	0.141095768959695	0.638268664856306	0.897407473025053
Merged-chr7-97077162-4	chr7	97076676	97077676	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4575.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.2373402210255	6.27403307785526	6.52916008025574	6.66602974114122	6.7244319133215	6.4641860032245	0.463332178992233	0.0920736334131581	0.404182833376811
Merged-chr9-21221136-2	chr9	21220636	21221636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18196.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	7.47501725124555	7.79098978781821	6.96968062901628	7.73238758829148	7.93314473845083	7.14440606039944	0.273710990120226	0.403190340501756	0.778626078688934
Merged-chr4-95770721-4	chr4	95770223	95771223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191302.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.82606712341054	3.70662215596597	3.9479590629714	4.21303606417328	4.06814117084767	4.06571797438672	0.892547364979143	0.0755195982526703	0.361805316179651
Merged-chr15-97379978-4	chr15	97379454	97380454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132667.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	7.28587466802082	7.02764017197218	6.81468409677808	7.41580622908844	7.81278417240521	7.20103320002314	0.663246596861786	0.0207456134837768	0.165408298846119
Merged-chr4-126199843-3	chr4	126199333	126200333	+	760.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	1174.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.98879610612831	3.97093136676594	3.95054940171109	4.522153934194	4.72874908690924	4.5381430927467	1.71936753468496	0.000219359290118869	0.00539693903377022
Merged-chr2-164074080-4	chr2	164073579	164074579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021420)	promoter-TSS (NM_021420)	-99.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	5.50228946124927	5.7369878108372	5.81292793066922	5.76999947736883	5.8126169198029	5.74890888327326	0.173543571782255	0.582006104797957	0.873497302863014
Merged-chr19-61052162-3	chr19	61051647	61052647	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88693.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.84603105550027	4.84558043377153	5.42985538785111	4.68647480002303	4.69056823956776	5.15640707595514	-0.446685940875102	0.309865699381721	0.705462734304293
Merged-chr12-85670296-4	chr12	85669797	85670797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16423.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	5.01798988286354	4.69807404614881	4.62112356087202	4.84942624609793	5.0529673496331	4.81288797214839	0.262461008871959	0.521628551760341	0.847183372504239
Merged-chr15-97162477-4	chr15	97161952	97162952	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	4792.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	6.12932245888275	6.49646422373804	6.25283463217263	6.02999995757244	5.69982274192629	5.89113732164206	-0.737243585969816	0.0167738369362166	0.143687609790506
Merged-chr13-52635545-2	chr13	52635045	52636045	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	38663.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.09014569356844	6.06264257584231	5.8825617765093	6.19429544291146	5.98642663967123	5.96858058800635	0.0566524119162526	0.848103677929664	0.964318271116593
Merged-chr19-36410281-3	chr19	36409799	36410799	+	790.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029508, intron 1 of 8)	CpG	31232.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	5.91503553867017	5.4770049631249	5.69637466498545	5.69107482918646	5.39937354711155	5.38250955641163	-0.390573178083853	0.260564295146545	0.658027962349749
Merged-chr17-8144104-4	chr17	8143643	8144643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 2 of 8)	intron (NM_026611, intron 2 of 8)	3645.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	6.47143233404995	6.5146120632522	6.30716289464935	6.71222311644636	6.66076829545103	6.520986168046	0.315427235070033	0.234533508926215	0.630628663776774
Merged-chr1-182953859-4	chr1	182953350	182954350	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	-938.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.9782455203854	3.87955049063336	4.37228224011518	4.00345713173235	3.91112191536471	3.68766210520766	-0.614950981304034	0.256846483136667	0.653968242620433
Merged-chr3-79154190-3	chr3	79153690	79154690	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8315.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.62559595264401	6.52112077665236	6.56088121006646	6.63250031789198	6.76202366550634	6.51377442329834	0.124571262953089	0.633503502915351	0.896059441151508
Merged-chr10-58523958-2	chr10	58523458	58524458	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 6 of 15)	L1MB8|LINE|L1	26021.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	3.69176272526905	3.78142410279815	3.88028072232476	4.33139272311219	4.47693964854139	4.45783833536849	1.88978624089705	0.00013011461360981	0.00354272800040742
Merged-chr6-5339484-3	chr6	5338965	5339965	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-41092.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.68095208115315	3.5415899477783	3.88792110126603	5.39439096906241	4.99868718583662	4.95904670778781	4.2909340747893	3.32893811882508e-13	6.89040504953227e-11
Merged-chr15-99074961-4	chr15	99074441	99075441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	-32.0	NM_001162506	78733.0	Mm.124905	NM_030159	ENSMUSG00000032783	Troap	AW476063|E130301L11Rik|tastin	trophinin associated protein	protein-coding	6.93384858992983	6.93486000367987	7.10208533526484	6.71641733864445	7.0330748807457	7.12316961910761	-0.0320336617188935	0.901771832475447	0.977356766938531
Merged-chr10-117283506-2	chr10	117283006	117284006	+	801.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	4.50387467020786	4.60988488915891	4.64411207158086	4.99681324885874	4.83445686828862	4.86565028192738	0.731461810682412	0.066171743867116	0.335732833152133
Merged-chr11-11679414-2	chr11	11678914	11679914	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6511.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	2.96053612916067	3.11017768112669	3.12715730752894	2.93056208615745	2.8887308136094	3.19827546223802	-0.277090516062083	0.683901808046659	0.915566200790719
Merged-chr12-52541492-3	chr12	52540984	52541984	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	25407.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	4.46701674233814	4.42003055582401	4.2748422571364	4.87174793888028	4.81548183782082	4.7390830332772	0.999736255583132	0.0171396409964598	0.145709426026329
Merged-chr5-44049532-4	chr5	44049036	44050036	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	45232.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	4.40942382836843	3.84663637567908	3.93991731780052	4.79591856018782	4.85395991691949	4.28276265197999	1.47621519506727	0.00561707510700162	0.0665601802197937
Merged-chr11-115119680-4	chr11	115119180	115120180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 4 of 6)	intron (NM_001169153, intron 4 of 6)	14312.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	4.58088588313402	4.50581597686399	4.50448519947713	4.58674026438008	4.65086670353219	4.29835460407862	0.00123023026236679	0.997741195304749	0.999535504317229
Merged-chr4-129082910-4	chr4	129082416	129083416	+	900.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 8 of 8)	intron (NM_029219, intron 8 of 8)	-22614.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	4.95466940909546	4.90728489888893	4.87523210018173	4.67211549043033	4.80585741930132	4.6237510614669	-0.461733590946651	0.240488857996158	0.637544107310171
Merged-chr4-141210690-1	chr4	141210190	141211190	+	1000.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	-3266.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	4.16430523299294	4.42385405540509	4.8025589924421	6.39563627837456	6.83173027302208	6.11405474919377	4.18941341526536	1.02531288183089e-21	8.98044571277737e-19
Merged-chr15-50761760-4	chr15	50761260	50762260	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	127289.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.21555617550392	4.1357612511033	3.97794936240588	4.58879256335188	4.67811603664685	4.30536790137155	1.10959115357883	0.0184189818202054	0.153043831734001
Merged-chr6-29528755-2	chr6	29528255	29529255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-527.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	7.54643887749672	7.25763499687889	7.40706921389019	7.6318227583353	7.64010870930731	7.64177052505206	0.33403996408451	0.145312663332781	0.508338649447163
Merged-chr17-87108078-2	chr17	87107578	87108578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019654, intron 1 of 2)	CpG	399.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	6.72333767804491	6.71586429852507	6.87581323004004	6.5814984854394	6.23520140844178	6.49570089513668	-0.527587633260254	0.0520510409258157	0.291438194829101
Merged-chr17-5522171-3	chr17	5521669	5522669	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	29569.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.29229650876619	4.376229245571	4.35753138927465	4.367666991535	3.96580203248665	4.42448879330242	-0.225977876458259	0.636191790850082	0.897032166554798
Merged-chr10-115314507-4	chr10	115314014	115315014	+	833.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1077.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	8.01454343884218	8.36771011234059	7.89905596539148	8.08300824411513	8.32888666787225	7.88933760808506	0.00593020541560761	0.981318683142886	0.995690081075595
Merged-chr6-54934575-3	chr6	54934034	54935034	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	37127.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.33712377090564	5.42621267411819	5.88096594556082	5.37043652316271	5.65697942239114	5.85172419545425	0.146803705640103	0.688074175756359	0.917193226920892
Merged-chr5-5719456-3	chr5	5718945	5719945	+	932.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-24877.0	NM_028734	74051.0	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	2.79807168645904	2.79960972005967	2.76211754421245	2.36456980034737	2.42351339986975	2.83512148291475	-1.33401157595149	0.119400031618269	0.461901428745779
Merged-chr14-55747612-2	chr14	55747112	55748112	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026403, intron 2 of 9)	Lx5c|LINE|L1	1919.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	3.6242562098986	3.27422296847003	3.74605340544454	3.69718954990611	3.76044709845794	3.66242006357949	0.525343078791873	0.370155942582564	0.754629515611739
Merged-chr10-80964308-2	chr10	80963808	80964808	+	851.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	34217.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.9353094681435	4.67083802716008	4.27550481013979	4.23031500773342	4.11250140368661	4.0341441770724	-1.38743957194787	0.00458807795533599	0.0576683973576431
Merged-chr12-102443788-4	chr12	102443248	102444248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3935.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.73740712880156	7.612189030492	7.62925213365128	7.97739157252458	8.16313237853305	7.83685348438643	0.492740158377683	0.0288403058153587	0.203748018872845
Merged-chr11-69090874-2	chr11	69090374	69091374	+	603.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009497, exon 5 of 5)	3' UTR (NM_009497, exon 5 of 5)	2346.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	2.90901391137615	2.9588654527626	3.05691129728047	2.91285669259208	2.77934384530739	3.49484634246207	0.531834703437157	0.474397298170958	0.82139231300766
Merged-chr1-36083538-2	chr1	36083038	36084038	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	15138.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.0386730135012	5.75122909853954	5.95513820169409	6.04198269894566	6.04364473061885	5.46332048527424	-0.048556679695202	0.88676296425431	0.973794308941933
Merged-chr9-85342121-1	chr9	85341621	85342621	+	731.0	f0_balb.idr	Intergenic	Intergenic	-14971.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.71215521988716	4.13880997289417	4.29963455727262	3.93474255548641	3.89697266474087	4.51904998641684	0.20435135269009	0.717968077911286	0.927249469209724
Merged-chr5-31614055-4	chr5	31613548	31614548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025796)	promoter-TSS (NM_025796)	97.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	5.93059111591549	6.10112598284389	6.16289729094378	6.34964723817304	6.16786056864783	6.18132589376612	0.29118826334207	0.310742619590801	0.706022433069834
Merged-chr11-100757744-4	chr11	100757259	100758259	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081194, exon 2 of 17)	exon (NM_001081194, exon 2 of 17)	2019.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	3.49213704991622	3.40679467510767	3.52140240729855	3.8405204971482	4.04911349069536	3.81040032340229	1.51038595647901	0.00652219523699337	0.0742507622492467
Merged-chr12-84173183-2	chr12	84172683	84173683	+	947.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	20832.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.73254359976767	5.49865258018421	5.79734245084006	5.61910572446709	5.52452381969031	6.01569507190828	0.0872702272967964	0.798461546426628	0.951934840959221
Merged-chr2-48767995-4	chr2	48767484	48768484	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-46125.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.9143088961919	3.76740403507316	3.90825080491721	4.07815240178475	3.920411188377	4.33534337200757	0.746468173688359	0.145814529733284	0.509223056367729
Merged-chr11-103371174-2	chr11	103370674	103371674	+	949.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	MIRb|SINE|MIR	-7482.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.40027448423194	3.50823231626563	3.83298012814219	3.27340176585989	3.60105388040792	3.71212805532106	-0.164041651607022	0.789456267916458	0.94921167421876
Merged-chr4-134273558-1	chr4	134273058	134274058	+	865.0	f0_balb.idr	Intergenic	Intergenic	13695.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	3.0350260999311	2.95034068183678	3.03827329061866	2.58510034110415	2.67064385034871	2.87626773166796	-1.56326669727762	0.0380971339657081	0.241593428838255
Merged-chr3-129472098-3	chr3	129471590	129472590	+	734.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38417.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	3.41250096203448	3.58868680852448	3.43183468143094	3.65244654092399	3.64560279997369	3.66783345252797	0.606993035013949	0.282479937812374	0.680451612659422
Merged-chr16-22470362-3	chr16	22469820	22470820	+	622.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 23 of 23)	intron (NM_001346673, intron 23 of 23)	-30750.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	2.8597277407861	2.75116087937656	2.63398373984705	2.93521982181988	2.67099394842773	3.07674283702759	0.725601129550837	0.338346885665172	0.728288914161912
Merged-chr9-114778301-3	chr9	114777822	114778822	+	690.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	L1MB8|LINE|L1	3671.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.03118649667641	3.88381319023039	4.22948739194912	4.3979259084797	4.28489898759335	4.2067067851616	0.715245049253791	0.135840635766782	0.492613973453145
Merged-chr15-97964135-4	chr15	97963619	97964619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-110.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	7.31362366091717	7.44102234052899	7.49896275278902	7.22662136704766	7.35574386759988	7.07745035170387	-0.273255541874393	0.252061775341491	0.649617120850337
Merged-chr10-81519759-4	chr10	81519245	81520245	+	943.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	4480.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	5.26780005292264	5.23908697570653	5.37306609560825	5.46624121894693	5.16400512198519	5.52146641333928	0.18316468678425	0.603244058134267	0.882544198306255
Merged-chr7-138845746-4	chr7	138845211	138846211	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	556.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	7.62459323694865	8.27646517656311	7.96688017434629	7.82057838666915	8.05081248233134	7.93966342442561	-0.064102501006617	0.805900015060309	0.954050229105499
Merged-chr2-129586292-4	chr2	129585795	129586795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.97515222586049	7.74323857094522	7.28637609389783	7.46376775566318	7.81157876113728	7.72586215452817	-0.0454485804912094	0.868652736627501	0.969708434868159
Merged-chr11-120660667-5	chr11	120660105	120661105	+	872.179993	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175263, intron 1 of 11)	CpG-2953	232.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	2.53708288330295	2.18978652354132	2.39862758111611	2.27951264798679	1.98713755537723	2.06376370794736	-2.00079549202994	0.0483317055696087	1
Merged-chr11-73018925-4	chr11	73018421	73019421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018883)	promoter-TSS (NM_018883)	-80.0	NR_152202	100043309.0	Mm.340872	NR_152202	ENSMUSG00000086943	4732414G09Rik	-	RIKEN cDNA 4732414G09 gene	ncRNA	5.11165194311385	5.22891489096287	5.13564962853344	4.94831823339915	4.86394833062302	4.84139196947024	-0.593806235234164	0.107323635141945	0.437325417869292
Merged-chr19-29360936-2	chr19	29360436	29361436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 1 of 5)	intron (NM_026362, intron 1 of 5)	935.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	3.63672852488742	3.20787272931611	3.38839980614523	3.40846748026244	3.45850994652364	3.5151890899951	0.127466119297528	0.835059277526957	0.961451138529569
Merged-chr19-45780490-2	chr19	45779998	45780998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023799, intron 1 of 15)	RSINE1|SINE|B4	3055.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	4.34393999214458	4.21769947569928	4.42072131910777	4.43808104353661	4.64219260204195	4.68745256432232	0.679209068763532	0.119457114303559	0.46203632998515
Merged-chr10-94521923-4	chr10	94521435	94522435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	7078.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.91560375070837	5.54313729300117	5.15684548785046	5.70849974808837	5.65687221056633	4.9829217261443	-0.160535449013315	0.706390765728097	0.922959194348248
Merged-chr1-74392205-4	chr1	74391727	74392727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153088, intron 1 of 6)	CpG	618.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	8.29096725351175	8.22656856957957	8.33009753664566	8.3815126183785	8.20419011069673	8.40876315971128	0.0695045566663989	0.737608967487936	0.933814636237903
Merged-chr5-19891890-4	chr5	19891394	19892394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	L2a|LINE|L2	-15624.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.19125384579584	4.01309922353786	4.58982293656986	4.37426850104104	4.42058594686367	4.83066325555182	0.700669732239922	0.155008801538707	0.524397535360164
Merged-chr15-79932041-1	chr15	79931541	79932541	+	1000.0	f1_c57bl6.idr	intron (NM_144811, intron 1 of 6)	intron (NM_144811, intron 1 of 6)	605.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	4.78741867519926	5.072196826352	4.88844018618208	4.65588130597069	4.8424265732806	4.72340945805721	-0.397125446271952	0.319499054574436	0.713488854059233
Merged-chr2-124707556-3	chr2	124707065	124708065	+	891.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53984.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.3983449897753	6.56441570408236	6.65650188815246	6.55015628458815	6.82461917127677	6.8214880664137	0.316936885636233	0.238027710945471	0.634592122414717
Merged-chr17-34001211-4	chr17	34000682	34001682	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-835.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	5.8711837036373	5.84992202906664	5.23906698001611	6.64757023828701	6.41788718107874	6.17269590161561	1.24317641947517	0.000485650969620966	0.0102725419270846
Merged-chr1-125468143-4	chr1	125467615	125468615	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32388.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.77925235952334	5.82726591057787	5.83295715574184	6.44081130614523	6.82148545888775	6.22627394368596	1.21438319435898	8.76693669408241e-05	0.0025435120935886
Merged-chr4-53270125-4	chr4	53269564	53270564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	168.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	5.43190866746608	5.02376145405939	5.14237923023479	5.04739217351857	4.65829505333166	4.88603707143673	-0.738620050892234	0.0640620041408403	0.329853818983591
Merged-chr16-91875087-2	chr16	91874587	91875587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	56543.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.95399567173787	2.97562485339705	3.19242426192879	3.08350929892631	3.07544362894097	3.41742950602105	0.694450987138794	0.30166020314746	0.698377118776631
Merged-chr18-4324664-2	chr18	4324164	4325164	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28289.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.61996275705197	4.59291199660623	4.85919917483347	5.14281910778602	5.38649015016454	5.20135367271302	1.24024138783042	0.00120187848306936	0.0207739727501528
Merged-chr11-119268466-4	chr11	119267945	119268945	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	482.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	8.78505875292589	9.0842116467402	8.43968318224138	8.43004921960843	8.69067090481003	7.95102244378167	-0.552544361156365	0.0540322589811577	0.298177225447949
Merged-chr9-51009172-4	chr9	51008679	51009679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-106.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	7.5277700466183	7.60995969084294	7.2731014585739	7.44946990930964	7.17216484455958	7.50337398281744	-0.159363737967574	0.522003247675196	0.847400826543341
Merged-chr19-32758264-5	chr19	32757801	32758801	+	905.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008960, exon 1 of 9)	5' UTR (NM_008960, exon 1 of 9)	724.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.58185838163532	7.70174917750414	7.35844348002995	7.92950089464731	7.77950883601807	7.47120086361291	0.267578030650557	0.285805001567907	0.683251812057186
Merged-chr8-11106999-2	chr8	11106499	11107499	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-98569.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	3.92284027447784	3.69786480194176	3.81697347139492	3.34917835272384	3.25098205379582	3.52442600120972	-1.64718678119747	0.00540483985694242	0.0646436560035165
Merged-chr5-20947933-2	chr5	20947433	20948433	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	PB1D10|SINE|Alu	-3056.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	3.64517566035222	3.6641218929885	4.11768860297573	3.68642227657436	3.83801388742171	4.01009869280053	0.0960972203417018	0.863240395556674	0.968208989562349
Merged-chr5-140614202-2	chr5	140613702	140614702	+	643.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 7 of 8)	exon (NM_008494, exon 7 of 8)	6861.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.55446121963252	3.76597760281043	4.45033279494893	3.81008805304969	3.72721542703834	4.44305557005127	0.145955263685503	0.81950996212682	0.957283576025177
Merged-chr14-10138781-2	chr14	10138281	10139281	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	PB1D10|SINE|Alu	254686.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.58289558373616	4.72217991641837	4.90334239697308	4.78945032323862	4.34549036620417	5.06524431458055	0.0415376309131881	0.927389790890625	0.983584626679457
Merged-chr7-46993279-4	chr7	46992742	46993742	+	867.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175318, exon 6 of 6)	3' UTR (NM_175318, exon 6 of 6)	15172.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	4.66961103348435	4.59208221561492	4.32535837131047	4.73175393010662	4.63012683077923	5.12028519055605	0.672064082914753	0.130287449996795	0.48249766761863
Merged-chr3-9849979-4	chr3	9849478	9850478	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16299.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.39386022810614	3.46544009404652	3.79534302383523	3.74360496220657	3.75055830614036	4.00270557332278	0.945921165861324	0.0975767390124311	0.416581082593451
Merged-chr3-115687100-3	chr3	115686625	115687625	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27930.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.97614460040171	2.68915955013921	3.08090223484942	2.6292582302501	2.64015415067508	2.67912149867237	-1.45218682075485	0.0593385594897818	0.315462678959384
Merged-chr5-20877878-2	chr5	20877378	20878378	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	4246.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.38621700627508	3.40446201414882	3.36452969473418	3.42472263644567	3.30718531885025	3.54341644875487	0.136919926060147	0.817010822801052	0.956754861188725
Merged-chr8-47680515-4	chr8	47680022	47681022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5363.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	6.50695515703576	6.33768426773681	5.70535617501207	5.86443214384602	6.08045060490748	5.85270528394521	-0.506863028126343	0.143576610898178	0.505874095512176
Merged-chr3-52103032-4	chr3	52102524	52103524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	CpG	1982.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	7.53679590006437	7.68611645562155	7.79089094320286	7.65731110671116	7.71031176840637	7.55122821212462	-0.0380751458423843	0.865985016566499	0.96870531720476
Merged-chr7-35036321-3	chr7	35035835	35036835	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20231.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.40632326274701	4.53142488107009	4.48028324834468	4.32257122365838	4.07636215418389	4.70004875705453	-0.244640361439339	0.606894699836854	0.884366969024721
Merged-chr2-44928731-2	chr2	44928231	44929231	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67109.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	2.88161641913887	2.83675068834534	2.86208965220472	2.98215625340716	2.86429920606421	3.16782723002578	0.68936489254929	0.321405474670126	0.714837665357421
Merged-chr12-40548020-4	chr12	40547514	40548514	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	101961.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.52850102593576	5.38839046473651	5.33900685866808	5.40682479832562	5.41598814684117	5.60537054737237	0.089565845166963	0.789062661374738	0.949092571737679
Merged-chr8-14890480-3	chr8	14889984	14890984	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1948.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.58962926250339	8.86189812200116	8.36816717067355	8.42166575041346	8.82681334733495	8.49869661699153	-0.0394503714953883	0.872331307997466	0.970261003150518
Merged-chr3-155093367-4	chr3	155092858	155093858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028938)	promoter-TSS (NM_028938)	20.0	NM_029330	75540.0	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	6.2360718769354	6.5812288520593	6.21285921200862	6.46551932176973	6.48569752841228	6.16417228961152	0.0421832870460629	0.886797020224165	0.973794308941933
Merged-chr12-3844489-3	chr12	3844028	3845028	+	873.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	17716.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.59197385741581	3.84023785778869	3.55948103338493	3.88032443385047	3.50329696187075	3.57508102069972	-0.0405788979600929	0.944039120612104	0.987523976011917
Merged-chr13-113614126-4	chr13	113613637	113614637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	4427.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.40140123970625	7.52437793834484	7.07968994768618	7.18966462158609	7.42458596290445	7.16377724995897	-0.128242512268115	0.617779234868481	0.888961082143304
Merged-chr13-58521194-3	chr13	58520722	58521722	+	779.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	89655.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	3.95661981586976	3.99361575843167	3.77547684652008	3.41017952392412	3.9428109509089	3.73995050846394	-0.605382801338749	0.298809980862191	0.695489982940998
Merged-chr6-29467697-4	chr6	29467192	29468192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025381)	promoter-TSS (NM_025381)	-91.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	7.28656594037049	7.43020138110824	7.1567738323868	7.13959884977562	7.40778783060185	7.15121575679265	-0.0827783630421575	0.737275949810574	0.933677151386322
Merged-chr5-135610586-2	chr5	135610086	135611086	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-22068.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	3.42680031804151	3.14739208768964	3.6629989347426	3.06359431992361	3.18743977543932	3.14993791783339	-1.1671614665996	0.0797102975272199	0.373348406228253
Merged-chr19-6987687-4	chr19	6987227	6988227	+	963.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185164)	promoter-TSS (NM_001185164)	-76.0	NM_011697	22340.0	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	5.76785701553922	4.93405454745971	5.00563542823607	5.06822491289433	4.50765030014837	4.88192759632904	-0.972364117271823	0.0367820047877818	0.236185957724293
Merged-chr14-8171898-4	chr14	8171417	8172417	+	881.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024221, intron 2 of 9)	intron (NM_024221, intron 2 of 9)	1075.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	4.97214993264876	4.46654316598711	4.31314613338704	4.86073855229132	4.74647901540162	4.11613078386904	-0.00871184795223239	0.986877415765484	0.997112900369387
Merged-chr11-116623319-4	chr11	116622800	116623800	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	952.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	7.43437691240744	7.19523884680197	7.016249326733	7.55038927616371	7.6340472728056	7.26969571361252	0.393516843659599	0.12687382066478	0.476008004801215
Merged-chr3-41614892-2	chr3	41614392	41615392	+	615.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172303, exon 11 of 11)	3' UTR (NM_172303, exon 11 of 11)	50012.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	2.20790979443249	2.58181836509011	2.58675054779097	2.70015362059469	2.44206559027192	2.6611404600481	0.773669020834309	0.382043554384597	1
Merged-chr7-97315717-4	chr7	97315260	97316260	+	698.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177412, intron 5 of 9)	MTC|LTR|ERVL-MaLR	10204.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	2.67330579642591	2.41886817994236	2.60248949453937	2.33078837256777	2.43275443095879	2.42104325842383	-1.0632866829865	0.198639926957245	1
Merged-chr15-98089967-4	chr15	98089475	98090475	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144851, intron 1 of 17)	B2_Mm2|SINE|B2	-2614.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	5.95987383124886	6.06347407685359	6.17513958275544	6.39121508142814	6.36224563838561	6.39199009557431	0.533518623751093	0.0542743340356602	0.2991758056601
Merged-chr2-165977015-4	chr2	165976532	165977532	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15605.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.3295221595751	5.11486996161422	5.43049296064458	5.49195260489463	5.78314270815482	5.87891584916928	0.829766509679517	0.0161913816383075	0.139974283985485
Merged-chr2-118012434-4	chr2	118011922	118012922	+	913.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	Lx9|LINE|L1	98780.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	4.04620829298917	4.06071646055954	4.17183293151369	4.0907515299001	4.27272760164866	4.28346336312054	0.364990341947096	0.438139730735626	0.800419903410376
Merged-chr7-139296465-4	chr7	139295925	139296925	+	762.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47943.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	5.68955585861955	5.82143015803041	5.69934468790249	5.42286809192633	5.56183834027586	5.7091971142896	-0.327041902512242	0.306913577604253	0.703091920100449
Merged-chr6-145123108-4	chr6	145122636	145123636	+	851.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	1397.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	6.20458109707871	6.32375451644899	6.57569947754461	6.37853505266785	6.78092992957711	6.1085709284064	0.159151487269247	0.618503306894403	0.889443702136265
Merged-chr2-158156669-4	chr2	158156164	158157164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10272.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	3.919985359199	3.8245436405954	4.03256553355921	4.14481941615768	4.13472045572344	3.67900547055573	0.266691335209589	0.617129179418852	0.888717787419226
Merged-chr12-65075538-4	chr12	65075052	65076052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178912)	promoter-TSS (NM_178912)	-54.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	6.91363416956116	7.13768751970798	7.08215868884119	7.16451713690535	7.40834874466434	6.82624406766771	0.181471322584987	0.506124242556936	0.838298186091476
Merged-chr4-133671158-6	chr4	133670630	133671630	+	738.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 1 of 3)	intron (NM_001356466, intron 1 of 3)	1517.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.89704153501596	3.77508151254114	3.98976492213843	3.65119127276796	4.09522102211414	4.35691172101499	0.519260071845	0.34714547415605	0.735293773892084
Merged-chr16-93084512-4	chr16	93084024	93085024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258450.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.10946311705414	5.00204398967829	4.60459821360999	4.98683510970637	5.14491815466359	4.92352432716261	0.197333984537095	0.625538554707824	0.892513881101067
Merged-chr6-148523093-1	chr6	148522593	148523593	+	733.5	f0_balb.idr	Intergenic	Intergenic	-78741.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	2.45543602662463	2.51197009106502	2.26964095437699	2.65658795972681	2.31545536574779	2.6768773651489	0.826047586335586	0.343907911710137	1
Merged-chr12-102339328-3	chr12	102338834	102339834	+	725.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	MLT1H|LTR|ERVL-MaLR	55693.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.2677482583312	4.19737709721214	4.80225753044639	4.02752559279183	3.67617140266562	3.71913927319303	-1.80576846600633	0.00114599771588911	0.020015990332431
Merged-chr9-15302218-1	chr9	15301718	15302718	+	727.0	f0_c57.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	-611.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	6.01707746107127	5.94769445481232	5.68873884373449	5.76394771603243	5.86690625258266	5.45058869566377	-0.323842555077175	0.326111303789915	0.718551386027045
Merged-chr19-46899505-3	chr19	46899003	46900003	+	982.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	62848.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	3.73569444835086	3.99780723411252	3.65767893574136	3.30562591795678	3.49628361743834	3.67523525994228	-1.12850673912521	0.0570568666442637	0.308042525066748
Merged-chr14-51237716-4	chr14	51237240	51238240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18372.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.79834131936363	4.73525137782066	4.68490130115681	3.9174627538521	4.20406771426882	4.28974473607019	-1.5470336046321	0.000813579726324168	0.0153506444145083
Merged-chr1-34839422-4	chr1	34838914	34839914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3636.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	7.4402056593841	7.36402069729167	7.05515794082567	7.21653159507998	7.47764518110775	7.04415499688756	-0.0533996572228963	0.839749580629853	0.962784121274377
Merged-chr2-128816494-2	chr2	128815994	128816994	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1809.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.20697502758724	4.10550242200691	4.33493686544501	4.37448893939108	4.29375361897489	4.26963015746168	0.276690474754271	0.544132007961342	0.857551302506722
Merged-chr11-60784294-2	chr11	60783794	60784794	+	637.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085440, exon 2 of 2)	3' UTR (NM_001085440, exon 2 of 2)	6769.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	2.86235264554854	2.87768020231555	3.02628987146396	2.87576255600485	2.60617794677146	3.20764362460282	-0.0294597992320696	0.969015529965849	0.992925679234087
Merged-chr6-37439985-2	chr6	37439485	37440485	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	2163.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	2.69020844964822	2.77664026116968	2.91692199381374	2.81613897936897	2.47380949256524	2.98923009059001	-0.10946428953342	0.889477134645253	0.974240173857916
Merged-chr8-111875977-3	chr8	111875486	111876486	+	830.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025781, intron 1 of 2)	intron (NM_025781, intron 1 of 2)	689.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	5.62719044244824	5.91170461258286	5.65502758761133	5.6404049473471	5.50210636721436	5.6631692722576	-0.268845266184592	0.405612616753892	0.780315699039533
Merged-chr15-35376635-3	chr15	35376116	35377116	+	862.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 2 of 61)	URR1A|DNA|hAT-Charlie	5070.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	3.45083374550415	3.91278189571329	3.74725486131232	3.82813525863097	3.8334728709624	3.81738067406631	0.343871927203403	0.538069248391507	0.854955846037171
Merged-chr15-98937475-4	chr15	98936950	98937950	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3060.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	6.07396285180014	5.718495544636	6.29403961001126	6.39503935965639	6.28851527825368	6.29629379877921	0.48724861780024	0.115063685121697	0.452801315520848
Merged-chr5-29731133-4	chr5	29730624	29731624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4774.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	5.38257854938279	5.28901756325373	4.99550240920057	4.84543675853548	4.96479776528631	4.94932724123011	-0.676685720706406	0.0723360661516702	0.353203414843505
Merged-chr2-60901669-4	chr2	60901215	60902215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-20277.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	8.17836256663495	8.38145513915569	7.89985432177669	8.16903656140983	8.28227726106157	7.68775275104583	-0.132709436855645	0.618943743445319	0.889524760662882
Merged-chr4-151997389-2	chr4	151996889	151997889	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1210.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	6.06888516791251	6.11075012357111	6.13755369081041	5.95939324726197	6.12010189991001	6.1558121324423	-0.0413788882771185	0.884760119616189	0.973538624783452
Merged-chr8-46737050-2	chr8	46736550	46737550	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 1 of 2)	intron (NR_045750, intron 1 of 2)	2465.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	3.54041451059763	3.33085475255153	3.87388666483593	3.6921180552738	3.73597651099584	3.8481493896733	0.5658385182318	0.332486678041814	0.723636403333698
Merged-chr19-5568985-4	chr19	5568514	5569514	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	990.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	7.13639098882997	7.00227120092361	6.89261771843193	7.12747981198848	7.30145940838959	7.07566721224955	0.240129597098828	0.329537366687526	0.721399184090983
Merged-chr8-117294125-2	chr8	117293645	117294645	+	545.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37126.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.98773578510897	3.88892393955864	4.40158791096307	3.76394680070557	4.07625292620306	4.26751055314093	-0.156551838296386	0.771429110045156	0.943614978016208
Merged-chr7-120830800-4	chr7	120830295	120831295	+	980.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12036.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	6.11485898455486	6.3651873275674	6.33566098601854	6.28977817962885	6.13398621539389	6.15313377519834	-0.135672581034118	0.632922117701781	0.895786490614717
Merged-chr18-79994462-1	chr18	79993962	79994962	+	747.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-52433.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	5.38672440681927	5.43684645592222	5.70041437609344	5.45314796885281	5.38064736779542	5.66097071961739	-0.020935158334318	0.950923113632757	0.988548499383496
Merged-chr6-126851505-2	chr6	126850988	126851988	+	777.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	3.62620122121009	3.6837011411737	3.73317896349917	3.40353791155612	3.20925561751166	3.25391635250989	-1.49636049860167	0.0131157067716931	0.121490652339442
Merged-chr1-191965244-4	chr1	191964734	191965734	+	922.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12136.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	2.89578479820755	2.81607889679696	2.92507734032197	2.58745308898371	2.70508474568222	2.81923182970955	-0.912789395677257	0.215649734030934	0.609048894570221
Merged-chr5-117424251-3	chr5	117423760	117424760	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	10258.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	2.89373946732444	3.13272134491117	2.94735113560857	3.10270697893129	2.99162827975733	3.1397305448896	0.349703319269518	0.604911574800397	0.883260490576483
Merged-chr9-44175998-5	chr9	44175472	44176472	+	696.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	41314.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	5.34187366715096	5.1916204990041	5.13013313797085	5.01062611607065	4.97011474322463	5.46355699588035	-0.154074718480581	0.686770988662091	0.91687527626078
Merged-chr10-62583419-2	chr10	62582919	62583919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 13 of 14)	intron (NM_019553, intron 13 of 14)	-4962.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	5.06539193426942	4.8582324807175	4.82316281321014	5.1264373936345	4.86912144375678	4.68408689696674	-0.0277714808507837	0.944900391079167	0.987875414328125
Merged-chr4-45452690-4	chr4	45452142	45453142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-43876.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	6.04548855029526	5.88011199288836	6.05712910003172	6.42836261735568	6.49026285281115	6.02503097390693	0.589736159458994	0.0505268518718529	0.286197296838199
Merged-chr2-53000534-4	chr2	53000048	53001048	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	142680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.23822441251053	4.17276229543129	4.29347397324271	4.17839895974199	3.87454568142788	4.08818558722531	-0.529932225160575	0.272716759412152	0.669951714189667
Merged-chr9-110653075-2	chr9	110652582	110653582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1079.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	4.56143620873328	4.39576995621249	4.22397509943955	4.7108959768908	4.57112799305659	4.64991986492176	0.573058778303214	0.18923013060806	0.574868493270401
Merged-chr2-154685104-2	chr2	154684604	154685604	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	28078.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	3.34047878727961	3.31517744312109	3.29235280341223	3.74939682265259	3.37185023881335	3.74408590435558	1.1512636546718	0.0580574085929844	0.311325697892959
Merged-chr16-91000735-2	chr16	91000235	91001235	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	B1F|SINE|Alu	10360.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	6.33027426933219	6.02784463649234	6.43583356784955	6.29604737004431	6.37189582416376	6.57949204592678	0.243176847208727	0.405897407238106	0.780439975167702
Merged-chr11-47171358-4	chr11	47170862	47171862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 3 of 7)	intron (NM_011891, intron 3 of 7)	207940.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	4.10456200500078	4.29473315293438	4.48548018757075	4.21736651509297	4.28549727736428	4.11355146394395	-0.224618874378169	0.635044808729442	0.896427381752102
Merged-chr7-110627967-2	chr7	110627467	110628467	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009627, intron 1 of 3)	intron (NM_009627, intron 1 of 3)	310.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	4.88135172994198	5.18978947668742	5.05128160517659	5.24009012862061	5.49805116266228	5.54684613886219	0.776784555440436	0.0335992728634573	0.223926976085107
Merged-chr9-49427629-3	chr9	49427093	49428093	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	-572.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	4.28829103808942	4.0778204526966	3.83014950123858	3.18255635863995	3.04881136855424	3.57777091573435	-3.23773198753888	6.55128542959836e-06	0.000278976130003081
Merged-chr17-7870580-3	chr17	7870005	7871005	+	734.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55495.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	2.82381928157095	3.0068040943307	3.0158835848751	2.82393090524813	2.76080704868896	2.97171353142399	-0.494184617149902	0.482972013021118	0.825908436418655
Merged-chr14-21751391-4	chr14	21750869	21751869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359953)	promoter-TSS (NM_001359953)	-183.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	8.25960951787064	8.17863384716744	8.04067131453852	8.1664841679142	8.4391180014884	8.44966195648239	0.269205587005075	0.220157380317164	0.614507907782981
Merged-chr1-51529851-4	chr1	51529357	51530357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-51458.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.3096585811496	5.52026027640237	5.56591934257849	5.62598196730038	5.40573327400628	5.51640767724313	0.096274067495057	0.774001506351593	0.94425470583833
Merged-chr6-146913252-3	chr6	146912717	146913717	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	24723.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	3.19681124581145	3.00580539133387	3.0425934007191	3.09386766853146	2.99823786840688	3.11496188182972	-0.0874251042570278	0.894364227739021	0.975478229649209
Merged-chr5-123061511-4	chr5	123060929	123061929	+	996.590942	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-14413.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	2.72933246220861	2.49540129539247	2.83615424736984	2.44342354968368	2.59564255563239	2.60750445727255	-0.786775383023162	0.323379457693746	1
Merged-chr8-117366676-3	chr8	117366173	117367173	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	17503.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.79936388366363	3.9729939732166	4.07391161165573	4.21237519716815	4.07803342576496	3.94722939256312	0.411383433084334	0.411488083085417	0.783952169517317
Merged-chr14-34674731-4	chr14	34674218	34675218	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004436, intron 1 of 18)	CpG	790.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	7.91576763179352	8.15490651478979	7.83947013452142	7.97122627828053	8.07317239842811	7.95155705176373	0.0279821051417724	0.900098029147013	0.976728292075907
Merged-chr11-69326187-4	chr11	69325681	69326681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-77.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	7.44795502813301	7.4507463651146	7.30229733276156	7.37386019326292	7.5530231694068	7.31350233668633	0.0263858394027788	0.90983524254391	0.979653930166868
Merged-chr12-51870370-2	chr12	51869873	51870873	+	826.916626	f0_balb.idr|f1_balb.idr	Intergenic	RMER16_Mm|LTR|ERVK	-40837.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.23220785745764	4.57697098262514	4.45485756244854	3.59151150244931	3.50923421931774	3.77986634681294	-2.59276540477254	2.87411688221492e-06	0.000136578822121839
Merged-chr5-96867487-2	chr5	96866987	96867987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-53785.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.76150027304296	3.81521964680784	3.71732828025238	3.83142911757839	4.30611285411645	3.78947331506937	0.749818800834696	0.172625060514758	0.551230561617291
Merged-chr6-58611969-4	chr6	58611444	58612444	+	925.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	RMER17C2|LTR|ERVK	15272.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	3.28671722933009	3.57263879820551	3.63235222848992	3.35779764049902	3.58542210516845	3.43661471450335	-0.125630123549626	0.834889862544699	0.96138272464184
Merged-chr4-141762383-3	chr4	141761899	141762899	+	718.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	15724.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.24620763772686	5.12792802094382	5.20321899116259	3.92612223309833	4.26162908600954	4.51215529839747	-2.28735510115749	8.03011754715468e-07	4.4753517807344e-05
Merged-chr19-59037683-3	chr19	59037173	59038173	+	593.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	38396.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.34733492428985	4.09375489580941	4.02280279509059	3.93486255674264	4.06631945160854	3.99201600900328	-0.479738059648232	0.332407131524966	0.723582278611625
Merged-chr3-51279793-2	chr3	51279293	51280293	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-2279.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	2.54720187009081	2.56865975949511	2.66520696214569	2.38819846273754	2.46081929997602	2.67764833520932	-0.48580992765568	0.540158289824943	1
Merged-chr17-46783121-4	chr17	46782590	46783590	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-434.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	5.51312792903946	5.63860587276075	5.80413277858414	5.6035839264532	5.68122363583298	5.74187537961171	0.0473438813478787	0.882062453296205	0.973002238292341
Merged-chr13-24105499-4	chr13	24104991	24105991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	MTEa|LTR|ERVL-MaLR	-114277.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	5.40405640918798	4.8868071023218	5.41750328538592	5.22099554377882	4.69873097662707	5.30758333578595	-0.329569292456831	0.43882257902201	0.80080572256114
Merged-chr10-20348621-3	chr10	20348113	20349113	+	852.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	intron (NM_027930, intron 2 of 6)	794.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	5.30672868500876	5.19669921712932	5.16877363280097	6.00840504956485	6.22491711920474	5.65425734021116	1.42572496095042	3.53161291485714e-05	0.00118205328809104
Merged-chr16-76309344-4	chr16	76308842	76309842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	63707.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.38891626642012	4.40519504388168	4.94306485658094	4.42571109754884	4.52538874344765	4.54028115466715	-0.229966965475272	0.615654685901224	0.888073730124794
Merged-chr7-98969103-2	chr7	98968603	98969603	+	607.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	130258.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.20888528964584	2.10486993808782	2.20790198776842	1.88431406015569	1.80763739800392	1.94706114946727	-2.93515319916938	0.0096344025309639	1
Merged-chr3-32366378-2	chr3	32365878	32366878	+	683.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	-713.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	3.58768152459428	3.73603451118793	3.85750915789291	3.67911665335181	3.54327657350678	3.51150103745022	-0.501538612384037	0.368902303515314	0.753729229488085
Merged-chr16-58475890-2	chr16	58475390	58476390	+	710.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_018784, exon 7 of 11)	exon (NM_018784, exon 7 of 11)	47536.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.98821405940724	6.89125907571044	7.01695541948176	6.67024816517479	6.73105026186521	6.76490375646827	-0.377111198484792	0.125054439399178	0.473193715030777
Merged-chr2-90635450-2	chr2	90634950	90635950	+	705.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41765.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	4.43827096351635	4.49340438102816	4.57296825859979	4.08889328707218	4.33019712032708	4.71266840416076	-0.271179462204762	0.564222793153657	0.866228461801718
Merged-chr8-79143968-4	chr8	79143463	79144463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	104620.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	5.42180042253611	5.22016378780318	5.43716665036658	5.25114433690333	5.2670984350049	5.18914866557706	-0.238380067388456	0.491295328700625	0.830448151501811
Merged-chr4-129822849-2	chr4	129822349	129823349	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2141.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.93715672005248	6.08111008449823	5.85482075848916	6.52326728572372	6.35228105536269	6.08890024223876	0.629996604146638	0.0358040800095617	0.23255128083371
Merged-chr14-118709915-4	chr14	118709424	118710424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3705.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.07201100539633	4.16880311778091	3.84708303339059	4.17609171558435	4.04845698965343	3.97166365423292	0.0731197401091383	0.883815902774912	0.973446302281334
Merged-chr17-70849877-4	chr17	70849383	70850383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	-93.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.38758112070459	8.34791429494235	8.07319685480362	8.16978479886719	8.4733772572913	8.1502817993072	-0.00438370168054935	0.984866059539	0.996809856127782
Merged-chr15-59005265-3	chr15	59004782	59005782	+	826.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	71472.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	3.5930755997249	3.54461859474403	3.74365907096848	3.36574592081556	3.02103926416146	3.3412442570364	-1.50510481935267	0.0183723095212538	0.152918188521005
Merged-chr9-32501598-4	chr9	32501087	32502087	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	39865.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.89379667992207	7.19671541254993	6.57175660847447	6.8837300077702	6.60174065490236	6.68347226219909	-0.305059929382273	0.292970487017021	0.690053425164737
Merged-chr14-75024983-4	chr14	75024481	75025481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	8954.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.09947152869301	6.34420494790074	6.18255253191536	5.95476493364681	6.27665934304601	6.30285408174427	-0.0470723598832085	0.873715679839461	0.970440430875665
Merged-chr5-31179443-3	chr5	31178933	31179933	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027901, intron 1 of 18)	intron (NM_027901, intron 1 of 18)	711.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	6.7276692900127	6.9033329103317	7.04859959734352	6.73892659754047	6.86553717511112	7.08149995520212	0.00527991357179648	0.983989108568972	0.996464361754829
Merged-chr11-117877269-2	chr11	117876769	117877769	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3743.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	3.38638435916973	3.47523170805624	3.47388189976524	3.38589242774051	3.33036189929515	3.37942327227318	-0.312766220745923	0.593977308196778	0.878752268912353
Merged-chr13-46669940-2	chr13	46669440	46670440	+	599.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033192, exon 1 of 5)	exon (NM_001033192, exon 1 of 5)	418.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	6.1381399945863	5.94940549842926	6.12870537293621	6.07340413420522	5.7070465094055	5.35926603874264	-0.556034908080035	0.107870955959891	0.438671801643296
Merged-chr10-57637207-4	chr10	57636708	57637708	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5227.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.38151262650526	4.47666126459347	4.51463318155054	4.49369384918802	4.37968445942466	4.22465518747648	-0.205653421183644	0.641579728579585	0.899095902698814
Merged-chr10-81133864-3	chr10	81133357	81134357	+	901.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2414.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	6.96433204364941	6.73300143898878	6.68406113565918	7.0601992267031	7.16292951680011	6.8846609668822	0.373187135709835	0.148137925337208	0.513628453046031
Merged-chr5-117977264-2	chr5	117976764	117977764	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 1 of 11)	CpG	494.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	5.01086633842339	4.87639254940545	4.97560906462416	4.74531611465938	4.48112093902648	4.39186787323002	-0.933126380918424	0.024379326536243	0.18396254669699
Merged-chr14-75008463-2	chr14	75007963	75008963	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	MTB|LTR|ERVL-MaLR	-7564.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.06594710165896	3.7520676048381	3.97397319881193	3.5053247066005	3.70919860677977	3.85048693050504	-0.786217699832298	0.153233016638814	0.522078979955876
Merged-chr1-191909346-2	chr1	191908846	191909846	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009579, exon 2 of 2)	exon (NM_009579, exon 2 of 2)	-1819.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	2.8758677373061	2.73566377242875	3.03568438989015	2.84319569059805	3.06554004259147	2.99165436042689	0.429282480469606	0.543882829799945	0.857551302506722
Merged-chr4-84362549-3	chr4	84362053	84363053	+	834.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	312533.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	2.78908057374723	2.60958493708668	3.00386272971781	2.80006188618435	2.66158948048125	3.01951327826577	0.122689649782547	0.870908378052087	0.970222087171093
Merged-chr5-125476431-2	chr5	125475931	125476931	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 1 of 17)	intron (NM_030210, intron 1 of 17)	558.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	4.55508427068818	4.78263982434266	4.60536023263214	4.87383280758634	4.6728882491885	4.58792901206032	0.151594492863467	0.714838769766187	0.926095012295528
Merged-chr3-137951971-1	chr3	137951471	137952471	+	1000.0	f0_balb.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29578.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	7.29379066422506	7.09830737643971	7.09111500290335	7.46281087856472	7.63971834630948	6.95187621163106	0.339697761769289	0.223331319516551	0.618087468987021
Merged-chr5-120558976-4	chr5	120558483	120559483	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 3 of 27)	intron (NM_145853, intron 3 of 27)	29630.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	3.00260017227045	3.10597901364019	3.20865814731263	3.43627807126923	2.96257802430015	3.10454512611441	0.33109485050303	0.626121459739336	0.892819497179456
Merged-chr7-143052784-4	chr7	143052271	143053271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	21.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	7.33745596515728	7.69514500592303	7.51080887433965	7.26680906661758	7.74606590331095	7.77497739477764	0.134589078267028	0.611184002863523	0.885964478139286
Merged-chr11-68459677-4	chr11	68459163	68460163	+	987.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	L1ME2|LINE|L1	27538.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.38910044549715	5.18910849729135	5.30517815556538	4.9104769633375	4.28536711345204	5.21799516857125	-0.939739408791508	0.0399411851072779	0.248759440898681
Merged-chr8-79398638-4	chr8	79398151	79399151	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	CpG	817.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	7.60190319463418	7.56981555851636	7.52212995996991	7.61827801029569	7.457414671406	7.4132779857557	-0.0960770646806318	0.668508873568581	0.909204788456481
Merged-chr15-103334542-2	chr15	103334042	103335042	+	659.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356627)	promoter-TSS (NM_001356627)	-204.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.69248330144164	5.64593080553849	6.30853519824655	6.158314866971	5.79248926603276	6.40254432527059	0.389719941661982	0.287018728010748	0.684323804399215
Merged-chr5-140828335-2	chr5	140827835	140828835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	2096.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.53173751919618	5.93229850157487	5.78371635705466	5.10599735653996	5.20183121310944	5.3212683798445	-1.06230092664637	0.00218971614410801	0.0330734980793138
Merged-chr6-83323802-4	chr6	83323290	83324290	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	5.19149124147256	5.20945573691976	5.29342258528629	4.99289131792271	5.45329645014283	5.68354470383629	0.342817944112523	0.368122133516382	0.75309680834045
Merged-chr12-8865053-4	chr12	8864565	8865565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-56242.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.4813295636309	3.62431448000114	3.66679828751117	3.30167615118736	3.39110362923211	3.30173242945196	-0.961841958847233	0.10590757709611	0.434427294799758
Merged-chr4-21775635-4	chr4	21775123	21776123	+	834.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-647.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	3.99077822925765	4.32945412951985	4.16208367680543	4.61083708288337	4.54960529335017	4.02528696557976	0.681988052549436	0.176509243503042	0.556873478933842
Merged-chr2-59337648-2	chr2	59337148	59338148	+	691.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026361, exon 13 of 22)	exon (NM_026361, exon 13 of 22)	49034.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.98799472415635	4.89926097756147	5.16124969918467	4.80913574668075	4.71517757828199	5.16236484537499	-0.256859995091816	0.519534183166577	0.845839622469233
Merged-chr6-8209212-4	chr6	8208721	8209721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145374)	promoter-TSS (NM_145374)	-6.0	NM_145374	252875.0	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	meiosis regulator for oocyte development	protein-coding	6.37416435222738	6.42788656446784	6.20899253263089	6.04355617118939	5.786600506185	5.85265908643854	-0.766076682752492	0.0087598427138365	0.0918574659776821
Merged-chr11-114895169-2	chr11	114894669	114895669	+	725.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	5128.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.00591221346631	5.85134223184087	6.08782069749494	5.8927461645047	5.78576485175963	5.99572000083741	-0.163062849887122	0.58801789616327	0.876182349656829
Merged-chr17-6430785-2	chr17	6430285	6431285	+	908.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009342, intron 1 of 4)	intron (NM_009342, intron 1 of 4)	673.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	6.62565142947073	6.68047819841605	6.30907115306039	5.8450989622822	6.25663204991796	6.09074065204125	-0.782875241401964	0.0096566908994777	0.0980732254807446
Merged-chr1-152437787-2	chr1	152437287	152438287	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	RLTR10A|LTR|ERVK	37920.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	5.91234838733555	6.0846130694058	5.66883195184663	5.81894977691847	5.72349032056272	5.6171977529119	-0.330865305850701	0.300655112246736	0.697365586816021
Merged-chr9-122294544-4	chr9	122294039	122295039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133979)	promoter-TSS (NM_133979)	-116.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	6.27367118763624	6.74693636589412	6.27865956592625	6.40758934538187	6.33052981026008	5.89267275604355	-0.362333512811726	0.263534655404162	0.661476013554917
Merged-chr2-128869510-2	chr2	128869003	128870003	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	5571.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	2.78311325028436	2.61689715061676	2.55691424343698	2.77258177506472	2.80162693677502	2.82412064256603	0.73975547563842	0.324793006922887	1
Merged-chr1-97676358-4	chr1	97675865	97676865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-14347.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.63057941706484	4.82188223330548	4.82952359216462	4.50892814833381	4.62881774809653	4.62759895151884	-0.406474436422466	0.32039705907247	0.714253897125111
Merged-chr8-125224618-4	chr8	125224134	125225134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	170439.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.4983500313159	4.43149667557927	4.52190673713236	4.83454768891974	4.72783890958909	4.67124195164465	0.645904016565861	0.115350917719888	0.453490156467583
Merged-chr7-19332111-2	chr7	19331611	19332611	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12960.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	3.39829741987116	3.51878743645076	3.5487178665504	3.78067180909889	3.62253984938778	4.01144066713673	1.09685619334826	0.0540152140645151	0.298150557611643
Merged-chr18-30447858-3	chr18	30447257	30448257	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174892.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	3.84058658859542	3.92986581355317	3.52278313692186	3.68435018502165	3.74046057772322	3.8660663870782	-0.0732735230645195	0.894998324733694	0.975632712848531
Merged-chr12-21336014-4	chr12	21335512	21336512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19620.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	5.78426420328368	5.65970792946381	5.95740625982672	5.48441074732545	5.16144525138442	5.12664903439523	-1.0059393596562	0.0038392812356045	0.0503994755613996
Merged-chr9-45179474-4	chr9	45178976	45179976	+	958.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 6 of 12)	intron (NM_145403, intron 6 of 12)	-16290.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	6.23674169476185	5.99227437420194	6.54586827735466	6.34360301499365	6.0977728797441	6.26638296028985	-0.0512042296518265	0.868029304562006	0.969593336687463
Merged-chr11-74897191-4	chr11	74896712	74897712	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-132.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	6.33069977458268	5.84821159506813	5.95588875276259	5.70275801172331	5.69473942887469	5.76988910123401	-0.613168543830208	0.0569566335222458	0.30768340986295
Merged-chr6-16898591-4	chr6	16898039	16899039	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031198)	promoter-TSS (NM_031198)	-98.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	7.00706305227456	7.40004143787415	6.86682486714069	7.26749732933084	7.37978862200323	6.94053241436289	0.144473573195903	0.609251821365123	0.885062773702803
Merged-chr9-96375581-3	chr9	96375099	96376099	+	819.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11168.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.78986099129445	4.40905991030446	4.82194873707303	4.80659366118058	5.31451256105893	5.28468199920079	1.04247856813528	0.0142765326992706	0.128451744468091
Merged-chr4-135353265-4	chr4	135352766	135353766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-52.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	8.32313904853109	8.32598701832795	8.15211996289152	8.14271255221832	8.12293699388521	8.06079113889225	-0.228704699334539	0.270350861079707	0.667299602638099
Merged-chr11-79084988-2	chr11	79084488	79085488	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-25152.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.32295705083283	4.23471875049946	4.20788183971712	4.68675830016847	3.63532420300667	4.57478740653835	0.33357748814447	0.571575823864135	0.869547320544841
Merged-chr17-34312427-4	chr17	34311907	34312907	+	924.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	6540.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.79629430686095	4.22712594502428	4.89031920368661	5.57670609857471	5.7604515646871	5.76370239452315	2.16991306759694	1.96108118497234e-07	1.29096236739857e-05
Merged-chr7-111025468-2	chr7	111024968	111025968	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3483.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	1.85627235823602	1.86328243012703	2.12371766017712	1.66916527092939	1.69041701623993	1.93911689567089	-1.67386290989319	0.12473304530431	1
Merged-chr12-32635209-4	chr12	32634678	32635678	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185157.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.61649646495579	5.96329677782329	5.24305378142748	4.52811470030724	4.30151935402668	4.55591499349702	-2.62749651724985	6.86520851571178e-10	7.72990893336056e-08
Merged-chr14-21751831-1	chr14	21751331	21752331	+	705.0	f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	intron (NM_001359953, intron 1 of 5)	279.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	6.90565252737007	6.79335680238363	6.85752149791669	6.91168678224908	7.12964584689271	7.15420092568696	0.331609646996823	0.179255032367007	0.560780311857825
Merged-chr1-74506691-3	chr1	74506171	74507171	+	982.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	611.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	6.6877996742127	7.30409462204735	6.93198661945751	7.18503686477136	7.03630531832394	7.11060770839621	0.158493954507814	0.571249669018702	0.869428183241799
Merged-chr7-28981931-4	chr7	28981429	28982429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-41.0	NM_001285942	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	6.70709629075898	7.04544494969396	7.03883616782067	6.76661344439596	6.87958491602861	6.57002578848839	-0.283913628282552	0.293064846401755	0.690138103226276
Merged-chr7-5020391-4	chr7	5019880	5020880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290426)	promoter-TSS (NM_001290426)	4.0	NM_001033383	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	7.62597479763394	7.53518543587743	7.88085787068498	7.68599718241247	7.59907240847681	7.84433710355515	0.0380694746660376	0.871694183013639	0.970250220039897
Merged-chr5-72250402-3	chr5	72249904	72250904	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	47061.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.72550504111487	3.74097772111734	3.79404570710347	3.46631339483783	3.43533951534407	3.60854936285976	-0.894402795814199	0.108079264752015	0.439157117955153
Merged-chr2-91087487-4	chr2	91086962	91087962	+	741.658325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.23716512291041	7.1783635132182	7.46267854629854	7.29734215224989	7.33931176992229	7.26286457979942	0.0162663163608951	0.945141263481397	0.987875414328125
Merged-chr8-128686249-4	chr8	128685762	128686762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	CpG	608.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	8.72347218021611	8.85703740364666	8.47236653744912	8.69662617221373	8.75046675679946	8.54412304806062	-0.0408128543824266	0.851752709215717	0.96531854415899
Merged-chr7-125620232-4	chr7	125619724	125620724	+	931.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	MTD|LTR|ERVL-MaLR	16795.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.20422851104757	4.32950146807012	4.76468321202551	4.40857633292923	4.59435598193642	4.75852488500968	0.366577967404694	0.430947895310512	0.796614699034595
Merged-chr7-98655839-4	chr7	98655345	98656345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172280, intron 1 of 19)	CpG	724.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	6.81720698269006	6.89714982021742	7.21416339947393	6.8511616526852	6.94797068683975	7.06982603685415	-0.0343324665477253	0.895322985071442	0.975665889379756
Merged-chr1-153804272-2	chr1	153803772	153804772	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 12 of 20)	intron (NM_001243223, intron 12 of 20)	39869.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	6.45088268609833	6.30669088527467	5.63517396299203	5.81849615063431	5.63166195597338	5.63942782225463	-0.856475342919402	0.015426215389231	0.135285047439622
Merged-chr10-34297465-4	chr10	34296967	34297967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030203)	promoter-TSS (NM_030203)	46.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	4.50952863011699	4.76062829032071	3.99356569431978	4.33396684992309	4.30526394168428	4.12141366533566	-0.540365639531201	0.293709326438522	0.690424156263798
Merged-chr8-14676587-1	chr8	14676087	14677087	+	621.0	f0_balb.idr	intron (NM_172910, intron 4 of 15)	B4|SINE|B4	-211949.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.10568614246318	4.67398590772216	5.09723562749364	5.06313232422598	4.6867164339954	4.76575788317974	-0.267630965084887	0.522038877075873	0.847418226725633
Merged-chr12-81484962-4	chr12	81484476	81485476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132134)	promoter-TSS (NR_132134)	-125.0	NR_132134	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	7.32119411042034	7.57776546251689	7.25355913562677	7.73056022147302	7.75386638212886	7.38115404801836	0.353673170857189	0.158034228836534	0.529589694443429
Merged-chr1-55029593-4	chr1	55029084	55030084	+	988.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2106.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	7.51167630467118	7.55427731438858	7.4380867388225	7.43573807485832	7.43236729294611	7.37721583341855	-0.129432026973568	0.560354477507021	0.865206445804495
Merged-chr2-48716418-4	chr2	48715909	48716909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97700.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.43036248030181	3.34386595134421	3.20730984395457	3.38677458162413	3.42044296730693	3.3397329337813	0.19191103645758	0.751420198184093	0.937886504040509
Merged-chr13-41358121-1	chr13	41357621	41358621	+	646.0	f0_balb.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	880.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.10065678648437	4.07445217071857	3.81517713113613	3.76040755956461	4.15906545154883	3.66024829700879	-0.347120183712224	0.536355774686846	0.853939276247874
Merged-chr11-98024138-2	chr11	98023638	98024638	+	677.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	5.34302431922293	5.30693918726743	5.91697401433733	5.79104897536832	5.99173324766654	5.88681089823812	0.654105160515608	0.063403457470109	0.328007640460882
Merged-chr17-86167551-4	chr17	86167054	86168054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-231.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	7.53356945707404	7.80656107344922	7.15269108699436	7.4326742250711	7.3155661508015	7.33264401089267	-0.256650023039862	0.335095104515941	0.725339338581532
Merged-chr15-12320601-2	chr15	12320101	12321101	+	733.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-895.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	3.89311455479523	3.77391520496022	3.65257651938761	3.85412191454299	3.46608689776006	3.6132386588157	-0.430221799535136	0.44645972063956	0.805889760011081
Merged-chr5-147459941-4	chr5	147459447	147460447	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	29791.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.63363046811329	3.62410896896945	3.57914218663874	3.95408491759173	3.86634291181615	3.91353535698532	0.973994013401156	0.066018590428089	0.335347795471846
Merged-chr2-153173528-2	chr2	153173028	153174028	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	B2_Mm1a|SINE|B2	12227.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.41358793231548	3.17301573080795	3.25247684210734	3.23872058900129	3.35449050617407	3.14547450525326	-0.121638908922761	0.847792836620852	0.964318271116593
Merged-chr4-107285642-4	chr4	107285142	107286142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21526.0	NM_007860	13370.0	Mm.148342	NM_007860	ENSMUSG00000034785	Dio1	5DI|D1|ITDI1|TXDI1	deiodinase, iodothyronine, type I	protein-coding	4.85274240497808	4.75107608526559	4.4249592817117	4.80264354461553	4.50986994584054	4.70974385114724	-0.0581372890464002	0.89266878618379	0.975146620821922
Merged-chr8-26744619-4	chr8	26744122	26745122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79801.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.78065254358676	3.45918998313811	3.50771405475348	3.58166616050479	3.43082056157859	3.3469699209822	-0.487951304043383	0.412268637083979	0.784379401712255
Merged-chr3-107105132-1	chr3	107104632	107105632	+	664.0	f0_balb.idr	exon (NM_008417, exon 3 of 3)	exon (NM_008417, exon 3 of 3)	3565.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.93958740689492	5.08094595253109	5.19144018215948	5.58218557176548	5.39391212509621	5.22273246486685	0.698016042328947	0.0524996970207418	0.293023530299295
Merged-chr17-26571594-4	chr17	26571098	26572098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1MD3|LINE|L1	10086.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	7.17309555567339	7.28365269325989	6.54794829507476	6.7732920974516	6.65365137403353	6.05312416678969	-0.787875982766752	0.0218795497745828	0.171443033962095
Merged-chr2-131211027-4	chr2	131210519	131211519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110992, intron 1 of 1)	intron (NR_110992, intron 1 of 1)	659.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	8.68290395491204	8.83309734824802	8.43426172816441	8.72560914996151	9.12327407917489	8.3933961184806	0.173604810482154	0.513143147925028	0.842378026960478
Merged-chr1-170939470-4	chr1	170938989	170939989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11906.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	5.38173435182558	5.38571044085447	5.22054786754403	4.9729429189846	5.01081018698317	4.71957454048332	-0.868655252183123	0.0201984121772979	0.162566023697609
Merged-chr12-104223904-3	chr12	104223431	104224431	+	697.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	9298.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	3.88995663634878	4.04252266645215	3.88548971939179	4.13275674988766	4.25010054963972	3.95637554510193	0.532724918615207	0.28569852077879	0.683159713574733
Merged-chr15-59726716-2	chr15	59726216	59727216	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68243.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.13177766571101	4.60984610071985	4.78322256653673	4.9292047439853	4.83957398701692	4.35834741021039	-0.276128972557306	0.547391005211763	0.859266262227511
Merged-chr13-93995607-3	chr13	93995124	93996124	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62172.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.07261684786315	4.47150951682826	4.65741089990764	4.10374172629078	3.99805917445573	4.41900795881327	-0.640986334447125	0.204739487289257	0.595392418074459
Merged-chr4-6355537-4	chr4	6355063	6356063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-10117.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.14159701751936	7.32216560433636	6.79082631739123	6.8047801329034	7.18562671378886	6.40953640996536	-0.390309261541403	0.221114106000498	0.615621501204726
Merged-chr19-14596503-4	chr19	14596007	14597007	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 2 of 19)	intron (NM_001302951, intron 2 of 19)	706.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	6.78006124153992	6.83150510280962	6.70919879887394	7.07581467033701	7.16945880522759	6.80023394091234	0.394418058110754	0.124089011162907	0.471396516305798
Merged-chr8-86885295-4	chr8	86884792	86885792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030563)	promoter-TSS (NM_030563)	-34.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.79052441563645	6.21001732724307	6.40585997544855	6.49695399487849	5.73237180784718	6.48347596782742	-0.351442332385126	0.328942122140974	0.721082938864213
Merged-chr15-35917523-4	chr15	35916990	35917990	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20756.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	3.11460726117591	2.94334867538096	3.166461540806	3.15618067079888	3.10410257499894	3.44782320422929	0.713472564239611	0.28168096156536	0.679779269988412
Merged-chr18-54970985-4	chr18	54970501	54971501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	19179.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.78233149545352	6.93869624437229	6.53320165670095	6.07602147395637	6.37162541438581	6.50401159046181	-0.712614632752814	0.0139266871310932	0.126328549308187
Merged-chr1-34460259-4	chr1	34459741	34460741	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 1 of 14)	intron (NM_011206, intron 1 of 14)	495.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.12285653128241	5.35771393637812	4.81866951020076	4.9145237733603	5.08646383442892	5.30569341200685	-0.051750224055399	0.896710573268366	0.97587199430405
Merged-chr6-29526631-4	chr6	29526118	29527118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-7.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	8.49823476778808	8.31850038903894	8.50190800157845	8.4767204644803	8.49351874807183	8.37918160526839	0.0170393425855289	0.933703564923082	0.985581479569838
Merged-chr5-92667040-4	chr5	92666518	92667518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360020, intron 3 of 9)	intron (NM_001360020, intron 3 of 9)	8109.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	4.27460149207699	4.0489207057599	4.08791556281705	4.25591450884202	4.18929535914734	4.15696220703931	0.16393984537651	0.728143480338388	0.930424194723373
Merged-chr2-24977263-4	chr2	24976772	24977772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	1239.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	7.16717524235039	6.98062589245202	6.43384213933745	6.93841377933917	6.96599767267451	6.5529246384973	-0.105097239541649	0.735139438202026	0.932617455907478
Merged-chr11-115703146-2	chr11	115702543	115703543	+	850.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B1_Mus2|SINE|Alu	-3115.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.57746703435662	4.56668087021185	5.07735115735875	4.57944301158032	4.72446271545196	5.31230433176546	0.333316801796953	0.476955358243165	0.823048451178624
Merged-chr2-129631299-2	chr2	129630808	129631808	+	974.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35846.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.18390965430365	5.15618939601689	5.66552182748908	4.92009690531204	5.02121251649613	5.04061170320874	-0.719229654742165	0.0623664922163377	0.324537301705816
Merged-chr2-24311405-4	chr2	24310905	24311905	+	919.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20209.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	5.05903917869406	5.14685997041434	5.28308854682971	5.17209256560988	5.11208252318475	5.59413879702159	0.277810053701051	0.458716336844525	0.813236440920954
Merged-chr10-62510305-2	chr10	62509805	62510805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	B1F2|SINE|Alu	-2548.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.09672010888056	4.85000229503485	4.85459584737452	5.00440060685228	4.59167965885128	4.59326500218706	-0.439839475159551	0.291040496058009	0.688801911257603
Merged-chr3-101597407-4	chr3	101596902	101597902	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7305.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.62408648289182	7.81885616134648	7.50347920561336	7.68630019826752	7.95414899180133	7.69586180958376	0.186110317199127	0.432425203045134	0.797350447524255
Merged-chr16-85050626-4	chr16	85050166	85051166	+	814.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	78455.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	2.71237979697709	2.70517606012701	2.68808878252945	2.88417444107172	2.62415451845122	3.22574739458923	1.12712868869613	0.144284510459812	0.507119216308772
Merged-chr10-125318701-3	chr10	125318199	125319199	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-9883.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.63642498401312	3.47213626668439	3.52206452050962	3.7617399956398	3.46539070251629	3.36141921721558	-0.00900899755733214	0.987841347909065	0.99723749001283
Merged-chr1-52764240-4	chr1	52763746	52764746	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36888.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.02757002561248	5.04211497776627	5.07988570200509	5.10371852398357	5.21165635810549	5.11012245691205	0.207419112771757	0.562700893353373	0.865755360453189
Merged-chr16-49817041-4	chr16	49816532	49817532	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38622.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.41790968088895	4.29000808989077	4.76543367488679	4.52779637167098	4.38732605420048	4.68538915159116	0.0910661908396494	0.840509871207948	0.962819298477451
Merged-chr13-73938597-2	chr13	73938097	73939097	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	786.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	4.65676887108284	4.58018798044227	4.58962894022889	4.66618647738207	4.58946515195449	4.84718903508235	0.20452659458591	0.618036608646697	0.889100855667229
Merged-chr11-118178928-2	chr11	118178428	118179428	+	670.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	33814.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.16234295175326	3.10822896902252	3.45210173135489	2.99169144126334	3.04441511455033	3.31494129650499	-0.52787465984126	0.428791563777945	0.795498170360422
Merged-chr3-51216167-2	chr3	51215667	51216667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-8280.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.63833451696342	4.66867796268972	4.86473315007409	4.65262721158616	4.29921490817359	5.2382919716568	0.128501484043891	0.790405855619507	0.949445509374735
Merged-chr8-61552587-2	chr8	61552087	61553087	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	38582.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.32323669099115	3.13216192378013	3.09071970010616	3.14072170398506	2.84726487745106	3.27862193587729	-0.403800387639284	0.557928928902127	0.86443214373182
Merged-chr9-24503294-4	chr9	24502796	24503796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172920)	promoter-TSS (NM_172920)	-156.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	6.13533348840298	6.13208313552718	6.10725158647542	6.35674688286174	6.16831300970734	6.10133422854135	0.15195444711261	0.591522212073237	0.877670687791177
Merged-chr13-51843990-4	chr13	51843486	51844486	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.41499760232208	4.43858487026403	4.52945914466432	4.70629170786342	4.437752221289	4.07734138311964	-0.0465507717326714	0.921619112167407	0.982542868764899
Merged-chr9-56952090-2	chr9	56951590	56952590	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 1 of 8)	B2_Mm2|SINE|B2	1166.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	3.22264883514485	3.56683585516472	3.60218841129755	3.23765224890143	3.4804462427256	3.51721385122544	-0.204789755768515	0.741512427787875	0.934868190792048
Merged-chr9-66856105-3	chr9	66855608	66856608	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-21402.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	4.66841545401978	5.15174109568916	4.86006601984429	4.59787299769997	4.51483151570782	4.8890566050934	-0.565198336613774	0.187430686070815	0.572425491891369
Merged-chr7-45510500-4	chr7	45510025	45511025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163662)	promoter-TSS (NM_001163662)	-117.0	NM_001163662	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	7.01348178477536	7.15417714300015	7.13980697971475	7.25200243497225	7.41132645286832	7.10855930923339	0.252813436263381	0.297281205757434	0.693896220958072
Merged-chr8-125177182-1	chr8	125176682	125177682	+	607.25	f0_balb.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122987.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.06963690567751	3.50837069316135	3.18962737325927	2.72448572383854	2.58336702912547	2.76510470727106	-3.36335165009992	0.000125384841189888	0.0034341744126821
Merged-chr9-83546027-4	chr9	83545522	83546522	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.8949826186909	6.43343422536271	6.37567057337793	6.47685036872117	6.26000492973327	6.04163809957524	-0.518236274308382	0.0972558145878924	0.415829701465976
Merged-chr19-17252280-1	chr19	17251780	17252780	+	556.0	f0_c57.idr	Intergenic	Intergenic	87225.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.92837279429881	5.08132658164232	5.44915545734709	6.57353180635262	6.76394508203119	6.47783403613444	2.6352483150523	8.95358880519113e-16	2.86542391270132e-13
Merged-chr2-34777452-12	chr2	34776944	34777944	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022310)	TTS (NM_022310)	5354.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	3.82572848175343	4.13866103037425	4.00811585320561	4.05896764887822	4.08753939728637	4.21561446926534	0.347782935141758	0.482773315325071	0.82577400036115
Merged-chr2-172399046-2	chr2	172398546	172399546	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5252.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	3.79665852121641	3.36004990294042	3.34166304376662	3.41946893775942	3.31484175450447	3.4719819206832	-0.455994274173939	0.462126389756123	0.815111700283474
Merged-chr4-136224926-3	chr4	136224439	136225439	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	18574.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	3.22231963181265	3.34179929024305	3.20969860417423	2.95780390091024	2.76964641210692	2.92046335463914	-1.84210099047985	0.00903782248826544	0.0938269683812471
Merged-chr16-94499119-2	chr16	94498619	94499619	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 7 of 7)	intron (NM_007834, intron 7 of 7)	27510.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.51432093138565	4.59126425174174	4.66348839409051	4.93952729076813	4.68037420881688	4.47457964121075	0.309935591292489	0.466120913812288	0.817366049302902
Merged-chr2-168583245-4	chr2	168582805	168583805	+	900.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	7060.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.61301790584224	3.45162291190463	3.42265559993988	3.25271996073085	3.02339421846632	3.26634441031606	-1.32281787303247	0.0372353963384682	0.238109657126596
Merged-chr11-29173525-4	chr11	29173033	29174033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134034, intron 1 of 15)	intron (NM_134034, intron 1 of 15)	626.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	7.72730244967508	7.95820733920408	7.60681696304374	7.76535660133991	7.90564287218962	7.92961810733041	0.128223295516045	0.577446045544062	0.872148719828391
Merged-chr13-73471790-2	chr13	73471290	73472290	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	MTC|LTR|ERVL-MaLR	4407.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	2.92880822089414	2.54817196160243	2.81062289568533	3.014498307449	2.91533119275529	3.00637907193201	1.01565680407656	0.177889052734106	0.55892688546374
Merged-chr5-125485146-2	chr5	125484646	125485646	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 3 of 17)	intron (NM_030210, intron 3 of 17)	9273.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	3.04420383645768	3.07401329780832	3.58511226348553	3.49627731434576	3.43936903637051	3.44879844275775	0.826816118983025	0.21016075029206	0.602150604672763
Merged-chr19-3387691-2	chr19	3387191	3388191	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1166.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	3.92250813173258	4.03513604511993	4.25132834530396	4.0415672368153	4.08549173816849	4.14210378640067	0.0600124075757586	0.90212623043567	0.977397387787646
Merged-chr4-94979131-4	chr4	94978629	94979629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-29.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	7.92076843795866	7.72499719960822	7.67680918199243	7.69613327069208	7.88295299975819	7.57144571509262	-0.074359229279441	0.749486404093976	0.937362436422593
Merged-chr8-82361044-3	chr8	82360520	82361520	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	41566.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.72646699628625	3.77675707939355	3.94970573364795	3.61460466817907	3.82388659180917	3.77485766549103	-0.233433756737558	0.662627653976556	0.906804932599005
Merged-chr2-148873204-2	chr2	148872704	148873704	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	2308.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	3.35212892878961	3.44162707989018	3.32744695801775	3.26846829500916	3.25072129832672	3.50630107183354	-0.14670186277091	0.808950954626485	0.954721853010197
Merged-chr16-10984844-4	chr16	10984348	10985348	+	864.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	8273.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.20080644466286	5.20782604834747	5.17192451225567	4.73821418515044	5.29291782602534	5.23572143965484	-0.160425782424898	0.68050516403026	0.914280879868547
Merged-chr4-41563566-3	chr4	41563055	41564055	+	996.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	5972.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	4.02081287746927	3.88261251746513	4.39013828923599	5.24058155138429	5.7145354896703	5.10706713189897	3.17063285913239	3.53226458412957e-11	5.16542480696403e-09
Merged-chr13-99328582-2	chr13	99328082	99329082	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	16096.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.73150949078835	3.66342817758227	3.59882548927641	3.85350620664442	3.79576284442078	3.61449402523402	0.315079723742756	0.561735224198295	0.865571255453378
Merged-chr8-11478601-4	chr8	11478090	11479090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-91.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	8.58132694878013	8.79055930327833	8.18873191897115	8.36215385430729	8.65794221073354	8.32947250686924	-0.121931010171803	0.628238313229782	0.893577294752216
Merged-chr12-116442797-4	chr12	116442297	116443297	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 23 of 28)	intron (NM_133762, intron 23 of 28)	37395.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.79979190610677	5.12748044092056	5.28995572524719	6.06787561059025	6.28721974004726	5.74082038885261	1.85312540044869	3.34835110802519e-07	2.06683678780831e-05
Merged-chr6-147042781-4	chr6	147042271	147043271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145573)	promoter-TSS (NM_145573)	1.0	NM_145573	232536.0	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	5.69565462330984	5.66752233408719	5.54770304584916	5.26024152046524	5.27229891640731	4.97604246823728	-0.881961212923682	0.0111724919619115	0.108742213326131
Merged-chr12-56344927-2	chr12	56344427	56345427	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 1 of 8)	intron (NM_145442, intron 1 of 8)	967.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	4.76717215583838	4.97251582541317	5.0143759517252	5.11876586772538	5.3356669486581	5.04403725311996	0.56007636347908	0.137928183894461	0.496333880789271
Merged-chr8-70303583-2	chr8	70303083	70304083	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021538, intron 1 of 9)	intron (NM_021538, intron 1 of 9)	798.0	NM_021538	59042.0	Mm.28668	NM_021538	ENSMUSG00000055681	Cope	1110005D17Rik|Cope1	coatomer protein complex, subunit epsilon	protein-coding	4.64578547493888	4.60348583367249	4.49170477751962	4.82526621173724	4.77583973682927	4.46964958545313	0.289606330461425	0.491813965201104	0.830769126788068
Merged-chr5-109751846-4	chr5	109751346	109752346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82296.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	5.54236049249254	5.66945924030441	5.16888463221087	5.29173845378486	4.84397411667157	5.01514632437132	-0.858044622969898	0.0264621683984646	0.193315549438055
Merged-chr8-46940786-2	chr8	46940286	46941286	+	807.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-46101.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.63525751388864	6.52958101033743	6.45317961417414	6.42857036165358	6.71917819900967	6.56639506385172	0.0587188197061253	0.82717015949589	0.959357353767392
Merged-chr19-4232346-4	chr19	4231814	4232814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132280)	promoter-TSS (NR_132280)	-101.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	7.3720771799566	6.95145085488906	7.54697807721521	7.18323699519554	7.50378444113785	7.38620675952992	0.0873631601881	0.74968944764728	0.93745630986217
Merged-chr10-78137330-4	chr10	78136826	78137826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32442.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.13588012361973	3.69364993475797	4.07287542078098	3.81079914340697	4.13073410736797	3.84638510665255	-0.103333662261355	0.849406029429751	0.964668152987617
Merged-chr5-3596632-4	chr5	3596138	3597138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172991)	promoter-TSS (NM_172991)	-91.0	NM_172991	269623.0	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	6.32177776845743	6.48090791966726	6.07502191413242	6.1860937623894	6.10569370970805	5.99412389027864	-0.356510342393967	0.225727382727127	0.620677573839554
Merged-chr5-25223575-4	chr5	25223080	25224080	+	911.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144908, intron 1 of 11)	intron (NM_144908, intron 1 of 11)	708.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	7.45214994877962	8.05858894872527	7.31842220069304	7.57514724752673	7.65537287267299	7.2670959290782	-0.212430159626612	0.470953794798698	0.819784379107259
Merged-chr11-117912896-4	chr11	117912397	117913397	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39371.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	2.78961465134804	2.92009980311261	2.92099880068802	2.78859522359571	2.78121040240677	2.9341063945185	-0.224437263292896	0.749751312319342	0.93745630986217
Merged-chr8-126537487-4	chr8	126536986	126537986	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55950.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.47773999599343	5.15968395397468	4.81580061687183	4.76495568797375	4.37154986439356	4.38652740904717	-1.49908161794757	0.000817656695229762	0.0153996329327021
Merged-chr15-55121204-4	chr15	55120718	55121718	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145470, intron 1 of 8)	intron (NM_145470, intron 1 of 8)	-7636.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	4.54606428705587	4.38245405675408	4.40219670617204	4.1974252705705	4.6243837666719	4.42602139517565	-0.0278364467116589	0.951267192610759	0.988739118609235
Merged-chr8-71370058-2	chr8	71369644	71370644	+	685.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145780)	TTS (NM_001145780)	-1154.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	3.68160695042619	3.53348574796051	3.69101243439711	3.97799712183262	3.95160148691065	4.19115413718919	1.29854007516871	0.0144241115669441	0.129248489690102
Merged-chr14-14350598-2	chr14	14350098	14351098	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 6 of 11)	intron (NM_008369, intron 6 of 11)	4103.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	3.07551598034537	3.05876960373302	3.1944425972774	3.04968724865759	3.28492414506767	3.47895625593165	0.718415254294216	0.271546202804698	0.66894089004273
Merged-chr11-51816024-4	chr11	51815509	51816509	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	41472.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.77921301802984	3.6164824237179	3.75445624733094	3.51829279285515	3.55761148142487	3.61800767385756	-0.536489967635211	0.330338752292772	0.721867972104254
Merged-chr6-148616198-2	chr6	148615698	148616698	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1889.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	3.07503616357862	2.96524132191356	3.17098056605202	2.92110446582993	2.93271393299589	3.07260018679345	-0.442278876528481	0.510130956046065	0.84070066529374
Merged-chr11-106319056-6	chr11	106318580	106319580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133199, exon 24 of 24)	3' UTR (NM_133199, exon 24 of 24)	-4518.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	5.60345400557959	5.46463292531743	6.15687177752174	5.4181224131571	5.75528563883489	5.93969041377609	-0.0914133207338222	0.808954734981846	0.954721853010197
Merged-chr5-65390566-2	chr5	65390066	65391066	+	939.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310612)	promoter-TSS (NM_001310612)	865.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	7.19800904410699	7.35463332570934	7.02463169257528	7.09229896808507	7.19978277045532	6.99974740159104	-0.152386049969097	0.538254281052549	0.855080856348593
Merged-chr12-73908512-4	chr12	73907992	73908992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010431, intron 1 of 14)	CpG	625.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	7.63112112803254	7.90706222094095	7.70589763228063	7.8299530740679	7.56967252759146	7.55568320228323	-0.139399249088522	0.553963522617399	0.862575362378324
Merged-chr2-168206443-4	chr2	168205893	168206893	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310086, intron 1 of 4)	CpG	719.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	7.24937931306833	7.02038806264081	7.13272067587349	7.24539884143002	7.0741259818929	7.23842834370086	0.0700808184822704	0.771640087270309	0.943614978016208
Merged-chr10-127165814-3	chr10	127165274	127166274	+	876.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001244618)	promoter-TSS (NM_001244618)	-57.0	NM_027739	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	3.01551899517571	2.96911283321873	3.24175179043502	3.41564072246061	2.99527823701838	3.01841734673483	0.35770105885773	0.603369390376785	0.882544198306255
Merged-chr8-83089746-4	chr8	83089217	83090217	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75635.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.8592148256919	5.72571544600285	5.79993683816341	5.65782700345218	5.55725583897255	5.62596889774474	-0.338386177543784	0.275254487822336	0.672734308479956
Merged-chr2-129625211-4	chr2	129624707	129625707	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29745.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.53204579033699	4.55663496439825	4.83167536293729	4.65196800006748	4.69794894783461	4.78785052578755	0.176022777298502	0.669099969989889	0.909505510225091
Merged-chr2-84382206-4	chr2	84381699	84382699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	43067.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.08666253291107	5.60029908011042	4.46824846043914	4.65301103367083	4.53601167338137	4.63440093465335	-1.17960214999883	0.0151773015540936	0.133778909715363
Merged-chr14-8214451-4	chr14	8213946	8214946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305936)	promoter-TSS (NM_001305936)	-56.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	8.19444531979395	8.69798685157605	8.13788609282232	8.37285824790137	8.55415377917507	8.06392133702463	-0.034324030781098	0.897741358471202	0.976134735553722
Merged-chr9-65294215-4	chr9	65293709	65294709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011802)	promoter-TSS (NM_011802)	-51.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	7.16418330317329	7.22657179029304	6.98913034196666	7.1184031206157	7.26969264594943	6.74066381105637	-0.0919157287527164	0.732191518294113	0.931719277771744
Merged-chr8-84966154-4	chr8	84965651	84966651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-140.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	4.38792986440706	4.49523145892582	4.84839702213388	4.63920625533668	4.89552081363763	4.94705054809473	0.593203543931198	0.166939722608107	0.542479123595071
Merged-chr4-53409718-3	chr4	53409204	53410204	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30709.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.37637907881301	3.17819395274819	3.40408983312108	3.04717155241041	3.35247865901278	3.52593021054948	-0.00243727139589845	0.996999428800187	0.999305189450257
Merged-chr9-107640358-4	chr9	107639886	107640886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5044.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	7.03432218444244	6.61241701231627	7.00121789440683	7.07860333578433	6.79255032736094	6.89465562052816	0.0508758285321181	0.852217754727613	0.96531854415899
Merged-chr4-148448454-4	chr4	148447926	148448926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020009)	promoter-TSS (NM_020009)	-156.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	6.44947413454998	6.44478645361699	6.33738589318135	6.66441003945285	6.86885093029508	6.56634415073585	0.478597063825008	0.0734949283920162	0.356239548016098
Merged-chr11-93886062-1	chr11	93885562	93886562	+	1000.0	f0_c57.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-145.0	NM_001346525	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	8.65667077777373	8.71250108376123	8.39375267235195	8.7367019794207	8.68100178789894	8.30685556884639	-0.00723549517135379	0.975233821494802	0.994454548709104
Merged-chr2-153343670-1	chr2	153343170	153344170	+	567.0	f1_balb.idr	intron (NR_040318, intron 1 of 1)	MLT1E2|LTR|ERVL-MaLR	2140.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	2.87402734550861	3.16489365675387	3.43255914973258	3.16074877303097	3.38463054163802	3.28910524737902	0.452178781677952	0.51190299575581	0.841619835183182
Merged-chr3-95950875-2	chr3	95950387	95951387	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	21630.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	9.24762363334955	9.2729245397375	8.81903597071339	9.03616435351474	9.26811130479951	8.7465109641262	-0.127954430684667	0.604625752837579	0.88314896167691
Merged-chr11-69367333-1	chr11	69366833	69367833	+	545.0	f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2093.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	6.95459106883667	7.5684524194954	7.25050541417854	7.70293373406658	8.0054726213354	7.28392446959313	0.612885469791524	0.0426599182766984	0.259003756290954
Merged-chr8-111210140-2	chr8	111209640	111210640	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	MT2B1|LTR|ERVL	49062.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	3.13914475269731	2.85086032616565	2.57820333818974	2.81867253225315	2.71366758080318	2.91758674106427	-0.304987399006561	0.701447269899578	0.921311809344826
Merged-chr11-48927253-2	chr11	48926753	48927753	+	566.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045540)	promoter-TSS (NM_001045540)	-71.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	5.24139975336947	5.29133906723635	5.23874789235127	5.80679250658891	5.88179515698455	5.61246575849291	0.988777979923538	0.00258319219087217	0.0376036136840608
Merged-chr2-181287667-5	chr2	181287203	181288203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	CpG	263.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	8.40220170007346	8.24266727585345	8.077173407623	8.33313032788705	8.34060777034738	8.00595351321881	-0.0145006378125565	0.949825423958366	0.98830874695788
Merged-chr7-80045580-2	chr7	80045079	80046079	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19351.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.3362661968406	4.90886685264701	5.62451968784952	5.33746740137922	5.18307007439451	5.44861354607159	0.0196157718192452	0.960171652343584	0.990335445597503
Merged-chr10-80033339-4	chr10	80032830	80033830	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	6329.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	6.27062036003857	6.19625994174336	6.086249495371	5.96107617534497	5.76924137346911	5.8641128526071	-0.567285673798192	0.0524815955660506	0.292961800876153
Merged-chr7-28312106-4	chr7	28311626	28312626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025616)	promoter-TSS (NM_025616)	-80.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	4.63244649532439	4.74523416788731	4.89644393481281	4.99957521901118	5.10531155778239	5.03187015676404	0.652712499583277	0.0882886701599308	0.394412308958849
Merged-chr17-24549930-4	chr17	24549410	24550410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-40.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	7.5617142933517	7.58366217571409	7.3230238895969	7.63568092873861	7.54505305941411	7.55052078601412	0.110793879829082	0.628081319226684	0.893508518159715
Merged-chr8-84659347-2	chr8	84658832	84659832	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3520.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.97987511326148	2.9614774497701	3.11266394233624	2.86931213086961	3.00296220216752	3.18362647236067	0.0210830047167402	0.975195033155755	0.994454548709104
Merged-chr19-29460127-2	chr19	29459627	29460627	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	Lx8|LINE|L1	49208.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	3.00878331980676	2.63276720871811	2.61008385165601	2.82746008902029	2.67759151401458	2.9976154126896	0.34795099008424	0.65647661669355	0.904654860421566
Merged-chr9-90272161-2	chr9	90271661	90272661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1392.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.71614753683484	6.4233823846397	6.59364910981853	7.05756862153176	7.21441917562542	7.16689015412511	0.875081770764425	0.000601209739153989	0.0121716447629015
Merged-chr12-69447426-4	chr12	69446943	69447943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28107.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	8.38321244189026	8.13366874665757	8.18845448422919	8.34633572713214	8.43121638222133	7.97702901329067	0.0454820770200231	0.84698216310113	0.964139319360833
Merged-chr11-77793400-4	chr11	77792896	77793896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-7902.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	6.78990114890497	6.71244923820726	6.65529665004549	6.50820899944114	6.79512804244457	6.57882799453752	-0.129384121367038	0.622902811574884	0.891251075175817
Merged-chr2-160353956-4	chr2	160353437	160354437	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13128.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.12107075069894	4.94259320207598	4.92423415718446	5.20425959758668	5.26615282376803	4.60984634468304	0.151382542071523	0.717179836641566	0.926979087819795
Merged-chr1-13660001-4	chr1	13659511	13660511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	B1F1|SINE|Alu	498.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	8.49924609637337	8.98205724546277	8.22605494116745	8.50652989107516	8.86093667316644	8.43860621609777	0.00611457800422134	0.982334445367212	0.995992226862322
Merged-chr10-61375320-4	chr10	61374811	61375811	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	8212.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	4.0398371551777	4.49013352569329	4.46689777390572	4.5796286752348	4.43903881590727	4.76409713221617	0.620898871801101	0.184128463350287	0.567763528958023
Merged-chr15-25279954-2	chr15	25279454	25280454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	133810.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.8655415508528	2.58000399626536	2.7421808344023	3.0158455582462	2.84146524710841	3.17259123161213	1.37860449982341	0.0668982214021865	0.338115271369574
Merged-chr16-96192275-4	chr16	96191748	96192748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001492)	promoter-TSS (NM_001001492)	9.0	NM_001001492	385668.0	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	3.10857597268951	2.94439889121461	3.06244501445449	2.95948462352511	2.77758104067474	2.89467578399789	-0.787155390051476	0.256521900826941	0.653601810454362
Merged-chr9-57638080-4	chr9	57637574	57638574	+	945.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	7579.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	6.07976865494649	6.58807095753145	6.33903108166702	6.44951437466713	6.67607990745175	6.09828600676443	0.140903890306931	0.660793746619853	0.906145159206461
Merged-chr4-45393843-2	chr4	45393343	45394343	+	874.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14923.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	3.3037052970864	3.0050272550593	3.2743963329456	3.33995613978266	3.31479406789467	3.50787133795267	0.755151874705795	0.234647494945081	0.630760120158631
Merged-chr7-126795997-2	chr7	126795497	126796497	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 7 of 9)	exon (NM_001177308, exon 7 of 9)	3181.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	2.99473532846539	2.9790480857764	2.91915387260231	3.25448803882742	3.04931129118568	3.28800615164537	1.02716538624695	0.124699438030376	0.472344463951907
Merged-chr16-84967229-4	chr16	84966732	84967732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-4979.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	5.37609966683208	5.38281485091826	5.48450636519641	5.35154669148188	5.39364519861707	5.02211559751235	-0.260435191575186	0.461724133198799	0.815107818354545
Merged-chr17-35910142-4	chr17	35909649	35910649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142745)	promoter-TSS (NM_001142745)	-74.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	6.67019173208856	6.39942314769934	6.61989273145021	6.73551338610437	6.64194282960312	6.19764180122719	-0.0151605996302668	0.958840030142969	0.990162613547306
Merged-chr7-88318751-4	chr7	88318285	88319285	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	40700.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.71437860412089	4.38244568660629	5.07808386581797	4.64442437646341	4.90365499575269	4.84026082577856	0.132657757405607	0.766276663619282	0.942437273046488
Merged-chr16-21642917-2	chr16	21642417	21643417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	51748.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	8.07054643963802	8.0719413221575	7.99286501363075	7.80418944626571	8.11044378994795	7.7107346465083	-0.215210905614345	0.351136246502114	0.739080866107151
Merged-chr11-110372378-2	chr11	110371867	110372867	+	794.5	f0_balb.idr|f0_c57.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-26735.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.9705056993612	7.2321888343078	6.68732920248069	7.21909789346487	7.51753684217881	6.98361402781666	0.414308892321796	0.152296002836811	0.520263755512759
Merged-chr7-80582332-4	chr7	80581832	80582832	+	864.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-47213.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	4.37488439142503	4.19151669628389	4.45742191435346	5.37793011215468	5.0878543586472	4.93802138461627	1.9005781093076	7.24440656118745e-06	0.00030413349199964
Merged-chr1-36793065-2	chr1	36792565	36793565	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_018872, exon 41 of 41)	exon (NM_018872, exon 41 of 41)	14081.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	3.04296137164889	2.82282746391894	2.90556947534351	2.6748198223554	2.65477862778458	2.91871153270821	-0.922216528871855	0.211179521051308	0.603607015368989
Merged-chr4-131921689-3	chr4	131921198	131922198	+	913.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-73.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	4.62324869449757	3.98496840618422	4.46228461409943	3.90250686865572	3.51827130924798	3.72727525039667	-1.99648449292987	0.000461704001668462	0.00987849487550254
Merged-chr11-69915903-2	chr11	69915403	69916403	+	927.375	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166596)	TTS (NM_001166596)	1869.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	2.95251004576132	2.91088424772631	3.40689202471542	3.25685986421753	3.01134847652049	3.52669143347461	0.715092081506476	0.315218400894119	0.70963157656984
Merged-chr10-111973652-1	chr10	111973152	111974152	+	552.0	f1_c57bl6.idr	intron (NM_178610, intron 1 of 9)	intron (NM_178610, intron 1 of 9)	957.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	4.78779563393802	4.89815839714582	4.35762432147694	4.57841593305613	4.76878338857838	4.47550391971283	-0.215243537675845	0.631432610643986	0.895122791781359
Merged-chr5-67842621-1	chr5	67842121	67843121	+	546.0	f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	4810.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.76613271112109	4.06964794848614	3.9591137866401	3.967096041004	3.82067935381372	3.93000810435188	-0.105926909812587	0.836920772886842	0.962003946322899
Merged-chr11-115198991-4	chr11	115198424	115199424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11437.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.01942165468832	6.10865268822269	6.34613940358628	7.25930142120157	7.54785253098268	7.14860624920666	1.85483376285291	9.62999715628688e-12	1.55322800185834e-09
Merged-chr8-94228051-4	chr8	94227588	94228588	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172410, intron 3 of 22)	intron (NM_172410, intron 3 of 22)	13524.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	4.01574002889495	3.89462477672029	3.93933892894792	3.89179668083951	3.86538920839355	4.147530761712	0.0432742915585023	0.931723322792412	0.984929477721491
Merged-chr11-114894660-2	chr11	114894160	114895160	+	806.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359812, exon 4 of 8)	exon (NM_001359812, exon 4 of 8)	4619.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.00947830717793	6.25742798783588	6.16917837694932	6.0778521303015	6.23531072881175	6.22939417492031	0.0568895131282037	0.842864700244676	0.963201849568639
Merged-chr7-16097584-1	chr7	16097084	16098084	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-996.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	5.08028659114171	5.35254975522866	5.22485273288919	5.41450313035309	5.40493334562318	6.0630458933484	0.823640477043281	0.0331844610008876	0.222176748548588
Merged-chr6-108599517-3	chr6	108599048	108600048	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 3 of 6)	MLTR14|LTR|ERV1	23619.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.20140455954193	4.59067525720752	4.31117414748063	4.36465883800702	4.04763707622178	4.24210688818701	-0.436030637855767	0.362466950764119	0.747908298347984
Merged-chr9-118861942-2	chr9	118861442	118862442	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	B4A|SINE|B4	-64594.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.76270204705254	2.31789390049674	2.5670716562465	2.65749240554436	2.42366454559113	2.76628771291003	0.320967071904597	0.704666902099373	1
Merged-chr15-95795369-4	chr15	95794850	95795850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	4507.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.18555212959696	7.04491249416145	6.8053109922811	6.93319543559072	7.08906773296428	7.0635716565385	0.00131798551558478	0.995859771531712	0.998961028701257
Merged-chr2-30436354-3	chr2	30435849	30436849	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 5 of 9)	intron (NM_138748, intron 5 of 9)	20299.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	4.25638700646503	4.15259448487876	4.2714328650087	4.13465739601251	4.05351564602923	4.15848610299778	-0.318497961509236	0.494691388370962	0.832098209532918
Merged-chr9-72533075-2	chr9	72532576	72533576	+	954.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033536, intron 1 of 8)	intron (NM_001033536, intron 1 of 8)	836.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	5.73765485088105	5.02843408146158	5.51211992365552	5.86812950733358	5.32240486028934	5.48801599187605	0.225522859038295	0.572727066635324	0.869927050630548
Merged-chr2-52905271-3	chr2	52904780	52905780	+	770.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MLT1A|LTR|ERVL-MaLR	47412.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.12288252247404	3.23634585052414	3.2921922617367	2.87616050666417	2.92122921769125	3.564368211641	-0.248958603164551	0.733488478269425	0.932101000333582
Merged-chr18-39666365-3	chr18	39665869	39666869	+	799.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107128.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	2.61857067914471	2.64446564312749	2.8984780774067	2.69710361329401	2.4028385408899	2.85564811962192	-0.329158177227689	0.682654123223448	0.915155649724165
Merged-chr11-60727285-4	chr11	60726798	60727798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302207)	promoter-TSS (NM_001302207)	-35.0	NM_001302207	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	7.89327144447128	7.94898183476416	7.60877401362983	7.87686001831922	7.79903219255053	7.6265687300956	-0.0815376720055797	0.726630285816795	0.929932984023315
Merged-chr15-57907610-2	chr15	57907110	57908110	+	880.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4589.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.01841353399077	7.37492709604078	6.72550696645559	6.86504786244362	7.12611134663802	6.76805602627676	-0.215257143575129	0.461485667821684	0.814992635038861
Merged-chr2-181737796-3	chr2	181737297	181738297	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22107.0	NM_001318924	18389.0	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	3.137265982815	3.42576163698509	3.59577936230677	3.18463268561323	3.50824195764799	3.34889907730076	-0.141134179869863	0.826894803145966	0.959278302444461
Merged-chr4-124715311-2	chr4	124714811	124715811	+	851.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029157, exon 2 of 17)	exon (NM_029157, exon 2 of 17)	450.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	5.04675876449985	5.66826564862397	5.4633628257696	5.23152133443671	5.16659242085405	5.49782976394144	-0.240445499575518	0.532048559981773	0.851916571969429
Merged-chr4-41358842-4	chr4	41358351	41359351	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	6888.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.61498874202587	6.95404740897513	6.53328140087177	6.48616762088024	6.90204302055047	6.75953587357153	0.0149432055324816	0.95869173730554	0.99015359851262
Merged-chr9-118648202-2	chr9	118647702	118648702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	41493.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.73896116645292	5.56172843413466	6.05782682420086	5.3972210840705	5.59804388798196	6.07747793655474	-0.145949980630315	0.691932965091799	0.918541547639936
Merged-chr12-84176859-4	chr12	84176352	84177352	+	929.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17163.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	7.0827524456506	7.21506063891174	7.10268493527215	6.9291276756356	7.25229539159476	7.08353035393328	-0.0542577687651591	0.826399529889124	0.959132530412348
Merged-chr10-96620942-4	chr10	96620381	96621381	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3880.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.43935539787367	5.58826231091274	5.39710442777716	5.99079130488149	5.7808828284297	5.52381148253219	0.561590126566739	0.0940690849001941	0.408560072801142
Merged-chr14-103978535-2	chr14	103978035	103979035	+	569.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48607.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	3.48984846698081	3.77926512220257	4.24429796324425	3.76875419204151	4.05168471912114	4.00949243954453	0.245438800377299	0.675651463396345	0.912256104731418
Merged-chr19-5621539-1	chr19	5621039	5622039	+	549.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-11445.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	3.6922682834655	3.54801881697484	3.86810752926921	3.80241428752507	3.61348138272855	3.84035975052374	0.160600571515472	0.769739781294284	0.943207535850597
Merged-chr3-15876910-1	chr3	15876410	15877410	+	588.5	f0_balb.idr	Intergenic	Lx4A|LINE|L1	-28423.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	3.08026819010955	3.15945550862771	3.31155460189921	2.90953919979086	2.96669749347286	2.98599374917025	-1.04486250957482	0.120804761512664	0.464893155207108
Merged-chr1-59237287-4	chr1	59236802	59237802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-71.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	7.58899349622312	7.88969967459092	7.29550344167344	7.45773994803545	7.55620334984524	7.13785085097507	-0.319694243650068	0.2431581882349	0.640376848445943
Merged-chr11-86754029-2	chr11	86753529	86754529	+	722.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	3538.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	6.35584918840352	6.16078280454884	6.02677200104848	6.08115045416774	6.69198183968701	6.13469068452489	0.256635466557201	0.433883311075637	0.798056017818821
Merged-chr11-87143726-3	chr11	87143263	87144263	+	874.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 5 of 23)	PB1D10|SINE|Alu	16688.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	3.73334549771819	3.64276787877431	3.76409878733209	3.73810174696065	3.91593058297043	3.93153659503092	0.500259764086867	0.341353036489996	0.730816878642537
Merged-chr8-86870931-3	chr8	86870434	86871434	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	14324.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.80731534036336	5.16892686311224	4.935555245842	5.26526451958758	5.55896068545955	5.2487621819515	0.797885880657588	0.0352548869695501	0.230475222734312
Merged-chr8-121578882-4	chr8	121578411	121579411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133765)	promoter-TSS (NM_133765)	-105.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	5.48202517123588	5.52991196094795	5.66774563177875	5.50690989342888	5.22811756344879	5.80237111477012	-0.0735403494064671	0.835581157280286	0.961787999211487
Merged-chr12-102396189-2	chr12	102395689	102396689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	43624.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.93601106700248	4.72003185166021	5.27569463386607	4.80619985092915	4.53514835309166	4.85973960390041	-0.567924779582681	0.180797353150362	0.562887982344895
Merged-chr7-100428525-4	chr7	100428028	100429028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 20 of 32)	intron (NM_001017985, intron 20 of 32)	-44463.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.4191128654477	6.33892381254949	6.23232329491761	5.99492093485242	6.1338282610899	6.16726328024312	-0.398635936355061	0.15526813893729	0.524873107662021
Merged-chr12-101759939-4	chr12	101759437	101760437	+	948.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-41414.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	3.34921250130468	3.53627833912082	3.56887952006987	3.33660304642889	3.14649976180117	3.4281208724958	-0.719793879009289	0.23998406684084	0.636956753865794
Merged-chr11-118236153-2	chr11	118235692	118236692	+	807.283325	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B1_Mus2|SINE|Alu	12400.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.92949428408075	7.82324184808012	7.92020415771509	7.89317834736759	8.42531605424177	7.94524985945182	0.324474634578886	0.192590186437142	0.579601410786647
Merged-chr1-152685757-2	chr1	152685257	152686257	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60540.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.05269578273972	5.5843994024137	5.75444158582421	5.45059149327035	5.68444867052996	5.73924313632914	-0.338534647000254	0.317318333392959	0.711230390378978
Merged-chr10-118814089-2	chr10	118813589	118814589	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54814.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.00476164314426	5.57127704603128	6.09719527413607	5.86984705631562	6.19092327324171	6.00511991740866	0.228787621094587	0.487849975785712	0.828740765241895
Merged-chr17-91284144-4	chr17	91283640	91284640	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-191338.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	4.38545076488852	4.60029534893164	4.65618325122612	4.66859641910929	4.35213377085687	4.75900982626573	0.11202042882682	0.799313944479396	0.952248176414355
Merged-chr1-161463921-3	chr1	161463416	161464416	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30741.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.14885890221041	4.2104650401405	4.31568047036337	3.67816391273813	3.80619827936043	3.82493808169265	-1.37681577609411	0.00700735805858858	0.0781592827532224
Merged-chr2-91710465-4	chr2	91709960	91710960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178724)	promoter-TSS (NM_178724)	132.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	8.31124370834943	8.6359384579495	7.97145238873555	8.28842276288713	8.52935219481473	7.92951167388675	-0.086847847779426	0.75540830731663	0.939315847504439
Merged-chr6-84054045-2	chr6	84053545	84054545	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	34659.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	2.70090730273081	2.75529479208177	3.03054533431829	2.68502528838147	2.67423894898403	2.87767772622639	-0.453146171788907	0.541704002362858	0.856889597897584
Merged-chr14-103472409-1	chr14	103471909	103472909	+	605.0	f0_c57.idr	Intergenic	Intergenic	-40932.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	3.49067154628169	3.75331770705005	3.51797356998786	3.76695958458717	3.84338305187741	3.70087354650693	0.595782552830349	0.284851026008535	0.682457480121006
Merged-chr1-152554014-2	chr1	152553514	152554514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 6 of 17)	intron (NM_016846, intron 6 of 17)	71203.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.1724099412457	8.09499550314831	7.74825654345102	7.78438536114334	7.93133035386809	7.74192463617652	-0.284407058592265	0.227451009425795	0.622598315425407
Merged-chr18-73812797-4	chr18	73812288	73813288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	B4A|SINE|B4	2604.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	6.56519011605198	6.6407197741358	6.556239075488	6.66212108347017	6.69467063604299	6.17631190579301	-0.0689397523042087	0.810327712590045	0.955030259072015
Merged-chr17-65741387-2	chr17	65740887	65741887	+	762.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	RMER6A|LTR|ERVK	31365.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.84753656396996	5.09128984843507	5.20383439447866	4.95742967891534	5.27532788626947	5.1385292242664	0.181980141436455	0.63301293195474	0.895817001600499
Merged-chr12-83592556-2	chr12	83592056	83593056	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	RSINE1|SINE|B4	4666.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	3.97906235635687	3.81646633515205	3.90021183144647	3.48071419428068	3.6855292948585	3.77069695678298	-0.825562275538805	0.129204535631694	0.480774367986696
Merged-chr6-47595111-4	chr6	47594613	47595613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146689)	promoter-TSS (NM_001146689)	-83.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	7.97910146241126	7.95875162216134	7.5582539780424	7.875775708247	7.59804580531635	7.57477698175572	-0.232747862117169	0.348374996803827	0.736259328771772
Merged-chr3-146779108-3	chr3	146778609	146779609	+	870.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	2307.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	5.01546267803899	5.05718888789848	4.46415144546034	4.87719155021295	4.91206650363705	5.02569847470694	0.108860167732266	0.797294835707667	0.951717269897722
Merged-chr2-14165802-4	chr2	14165274	14166274	+	839.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8750.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	4.70932971872229	4.71085949430896	4.72748495570498	4.73508959145758	4.4322119463472	4.79294484728127	-0.150352719794218	0.717793585873227	0.927191179259769
Merged-chr7-28732912-4	chr7	28732413	28733413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310687, intron 3 of 6)	intron (NM_001310687, intron 3 of 6)	7908.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	4.1942433808106	3.96889992451709	4.31703626020772	3.91441974626149	3.52817761962496	3.72405551001778	-1.35335646660555	0.0131106071501379	0.121490652339442
Merged-chr4-133205484-2	chr4	133204999	133205999	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	7037.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	4.63899441255722	4.52535641463458	4.59149413155219	4.1832583517158	4.15316754893401	4.36764210131288	-0.928623910068203	0.0357893732588283	0.232527125814298
Merged-chr1-144004943-4	chr1	144004441	144005441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-792.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	8.62400134417872	8.97671815087697	8.42413572785871	8.24801004464269	9.06557018342265	8.30102469718691	-0.129124918325418	0.669670123307472	0.909715790834065
Merged-chr17-30008089-2	chr17	30007589	30008589	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	3050.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.32226277269918	4.13349377736557	4.32412339619558	4.37678646078383	4.24143226045346	4.47532467042007	0.269573309375652	0.553775579635413	0.862506709162613
Merged-chr2-69723055-7	chr2	69722581	69723581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-7.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	8.53354503468627	8.80753376515094	8.5470282023687	8.53187187833695	8.78480337772365	8.5057294525281	-0.0281454498439385	0.898346344777219	0.976339538755983
Merged-chr2-152293955-4	chr2	152293456	152294456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	84.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	8.09586062362755	8.13362905180671	7.63004406102044	8.1592158986099	8.08180789586353	7.57470133757572	-0.0126076352890021	0.963377465666294	0.991116725160803
Merged-chr16-92824611-6	chr16	92824078	92825078	+	794.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	1496.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.1688635546006	7.12873959035681	6.69383192501936	7.06850214709218	7.05500837921814	6.78617507477717	-0.0650094740274762	0.811606052969734	0.955304895434479
Merged-chr13-47105978-4	chr13	47105481	47106481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 1 of 10)	CpG	240.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	8.20493232865902	8.25891170627177	8.21179794685132	8.24211336928346	8.02900213688969	8.21633688336757	-0.0889359351737869	0.671097434817583	0.910289924720412
Merged-chr5-137778830-4	chr5	137778275	137779275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356989)	promoter-TSS (NM_001356989)	-129.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	6.00767971967172	6.22135471209635	6.47881272782135	6.32482420034543	6.38119596485002	6.50382947391748	0.268477262032624	0.358110150877301	0.74454984718519
Merged-chr17-34151179-2	chr17	34150673	34151673	+	988.75	f0_balb.idr|f1_balb.idr	TTS (NM_010388)	TTS (NM_010388)	-2018.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	2.75838098892986	2.67772300360096	2.8585834496562	2.46429829409264	2.36158984700336	2.36038059233693	-2.38318758403189	0.00654303044691593	1
Merged-chr4-35222594-2	chr4	35222094	35223094	+	914.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3286.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	7.15856260378192	7.06829506354312	6.89097177819577	7.43694493417286	7.59631834451783	7.34979031274635	0.624703619858555	0.010023893408447	0.100562831291302
Merged-chr1-128417214-7	chr1	128416684	128417684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177445, exon 1 of 16)	exon (NM_177445, exon 1 of 16)	232.0	NM_177445	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	7.54071902061734	7.89282882408902	7.55192916190433	7.64829615659845	7.63262567673398	7.28018187043065	-0.201273923397409	0.426938586568493	0.793904265858508
Merged-chr7-66124787-4	chr7	66124299	66125299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	15284.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.66541197263473	5.63942399491451	5.88446077654558	5.41702134004536	5.31252429525743	5.65485127194091	-0.506969655185486	0.128501683548632	0.479537170053842
Merged-chr19-5726335-4	chr19	5725823	5726823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053252)	promoter-TSS (NM_053252)	-6.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	6.92780374510281	6.83708550179809	7.12632055156826	6.7790990875518	7.08868394062481	7.2863557175159	0.153586112574344	0.569670153793604	0.868895247713032
Merged-chr9-78483588-2	chr9	78483088	78484088	+	789.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1864.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.5794459745361	3.32559634911674	3.76426893112018	3.30000000524802	3.5403908383176	3.63752835684856	-0.229437262006098	0.705866972638534	0.922834459892351
Merged-chr12-13249125-4	chr12	13248579	13249579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134040)	promoter-TSS (NM_134040)	95.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	5.72107608572817	5.90874121470989	5.77240616682106	5.75485286149807	5.52488514172251	5.50167690167931	-0.37628154681983	0.238846022014801	0.635543188457686
Merged-chr18-53250254-4	chr18	53249757	53250757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4595.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.69319059925302	8.64597188446974	8.35641611440993	8.50439720078637	8.78476888001683	8.34410665197278	-0.0195617879687109	0.933706905351281	0.985581479569838
Merged-chr7-6173293-3	chr7	6172731	6173731	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028316, intron 1 of 3)	intron (NM_028316, intron 1 of 3)	718.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	4.992495040278	5.1455012683805	5.23653102436826	5.10108956484871	5.07022338130455	4.99934169006349	-0.131777798733121	0.717880182315232	0.927216085145081
Merged-chr1-74385521-2	chr1	74385021	74386021	+	590.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013612, exon 15 of 15)	3' UTR (NM_013612, exon 15 of 15)	-6088.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	3.24357026619526	3.30435996747826	3.99672842520318	3.6391365824515	3.68452680369851	4.02113918402802	0.766163367468686	0.244577588391738	0.64198815440115
Merged-chr16-10482529-4	chr16	10482016	10483016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	2444.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.28952378309348	4.80579197045004	5.37705388043633	5.4515252575865	5.30991772529657	5.1899358598754	0.30518497647919	0.430453842392583	0.79626959019857
Merged-chr5-72208679-4	chr5	72208172	72209172	+	930.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	5329.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.92273625438549	5.32590968249808	5.09012559190413	5.1775591219831	5.62362952605947	5.28979817685296	0.521404652551492	0.174112092012931	0.553317761609134
Merged-chr8-79210135-3	chr8	79209640	79210640	+	969.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026315)	TTS (NM_026315)	38443.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	4.96988758754266	4.95634224157682	5.11368635632587	4.53226513666426	4.43049899548696	4.31943341978756	-1.35467111511443	0.00111625408273623	0.0196034760904002
Merged-chr17-71096706-4	chr17	71096204	71097204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	77147.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	5.02046715112736	5.07322129321596	4.79799936160988	4.54341182823035	4.36912247807256	4.62383025359547	-1.10300526994976	0.0072222952044745	0.0799564581391583
Merged-chr10-53927685-1	chr10	53927185	53928185	+	1000.0	f0_balb.idr	intron (NM_008548, intron 8 of 12)	MTD|LTR|ERVL-MaLR	148111.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	6.7011576512511	6.59346148871825	6.29356301790167	6.06058536355496	5.99300100075442	5.94813018192246	-0.9099528731411	0.00162870876155982	0.0263955243701489
Merged-chr7-113187988-2	chr7	113187439	113188439	+	780.5	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-19526.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	3.30140311096864	3.21643131456388	3.45393117973148	3.09840092880607	3.17327739570161	3.25627636410366	-0.614787202698192	0.328835841506977	0.721014327126211
Merged-chr8-109458232-3	chr8	109457745	109458745	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35782.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	5.76572486885833	6.53673686479862	6.28584509296243	6.1407724067335	5.86372766802517	6.10074909787663	-0.341877276453639	0.320668699484206	0.714486534537161
Merged-chr7-127948322-3	chr7	127947825	127948825	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1600.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	2.78303545706852	2.64723154724606	2.55578382998987	2.72868109453582	2.75508065476717	2.88248203850731	0.626692897128876	0.404778230310646	1
Merged-chr3-60526407-4	chr3	60525916	60526916	+	932.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	25237.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.69918169762981	6.62123946947507	6.02408132969672	6.67737700067078	7.43967010545014	6.39154189646711	0.684554705091016	0.072615839781446	0.354018766695052
Merged-chr5-140332274-4	chr5	140331769	140332769	+	859.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	313.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	4.22554889811491	4.37876067275013	4.41984175716409	4.31348780830486	4.57794863722212	4.82784714069239	0.609819696841792	0.179657689193073	0.561168099492368
Merged-chr11-113422660-7	chr11	113422131	113423131	+	981.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	143184.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	5.94837485092223	6.19170455638115	6.25018355054401	4.76569872353724	4.65008377072562	4.78588964318218	-2.8173729079621	1.5157376728311e-14	3.89263889755958e-12
Merged-chr16-20085782-4	chr16	20085269	20086269	+	977.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11785.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	4.45508972508194	4.66834760902336	4.91072299297404	4.66223296386652	4.70749661512787	4.76092451084182	0.0671904611523196	0.87274112952289	0.970272084673997
Merged-chr9-121679708-3	chr9	121679222	121680222	+	773.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178677)	TTS (NM_178677)	25307.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	1.91120527106175	2.07200484262434	2.0447016815781	2.12476661486137	1.97030768749892	2.252210249245	0.805885838704796	0.389828281147983	1
Merged-chr11-69099356-4	chr11	69098859	69099859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	410.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	9.14783185023721	9.17417764609075	8.57838436016024	8.78118754512505	9.01008899641866	8.42063943634994	-0.320699313959022	0.234479940899243	0.630591822623526
Merged-chr18-64510257-4	chr18	64509779	64510779	+	958.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 6 of 14)	intron (NM_001142950, intron 6 of 14)	6278.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	5.64550217960582	5.75155969567987	5.45545241377481	5.31138828376135	5.72052216894168	5.42648682181219	-0.227086739855068	0.512715153258298	0.842083317214953
Merged-chr14-18331806-4	chr14	18331311	18332311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009455)	promoter-TSS (NM_009455)	33.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	6.20727394151788	5.8859778383194	6.04247710513179	6.24065135870437	5.6376845909519	6.12488735001493	-0.056934628302842	0.86516033407986	0.968612654271565
Merged-chr17-6948564-5	chr17	6948029	6949029	+	969.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083945)	promoter-TSS (NM_001083945)	-173.0	NM_001083945	100037282.0	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	4.33479595255706	4.31453500933299	4.14381372597487	5.02434592259892	4.49523792858323	4.58888881196019	1.1179624832382	0.0162174233607691	0.140114065948632
Merged-chr5-123832474-4	chr5	123831998	123832998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33018.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.97212938230695	4.80078011324619	4.64765359936316	5.59063427475842	5.67284920134684	5.05374623411064	1.34792223654539	0.000836500350540008	0.0156658836749343
Merged-chr7-30559722-4	chr7	30559218	30560218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-72.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	5.22473578857238	5.39957127494843	5.71548941929814	5.68562476050603	5.87152303199107	5.59211636184482	0.524701297431066	0.128382637813009	0.479272071137105
Merged-chr5-140739085-2	chr5	140738585	140739585	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	B1_Mus1|SINE|Alu	14958.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.82929294784675	5.6854823857532	5.61505024429115	5.27710386381086	5.47000417885538	5.02070777335255	-0.819517764593889	0.0209413012297086	0.166474041532587
Merged-chr14-57797582-4	chr14	57797064	57798064	+	864.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-625.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	5.80297281082832	6.34982842529132	6.26864624060965	6.03732717859311	6.49584240448437	6.28941867057068	0.220705061015178	0.500259456874326	0.834978949366358
Merged-chr2-156253040-2	chr2	156252526	156253526	+	633.833374	f0_c57.idr|f1_c57bl6.idr	intron (NM_172674, intron 3 of 17)	intron (NM_172674, intron 3 of 17)	56379.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	3.65459777691817	3.43871249053612	3.98657833106282	4.93222319641079	5.16944512196865	4.46077966556116	3.54687310089255	1.32208360237705e-09	1.42497321744287e-07
Merged-chr2-68874646-4	chr2	68874136	68875136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	13195.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.20599579179044	4.94233517850176	5.38306223876962	5.53499431927627	5.35958239865305	5.38675832724666	0.500207442721675	0.165254782665408	0.540019634607989
Merged-chr2-170129433-4	chr2	170128861	170129861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1859.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.00747299541242	6.99459134295123	6.98499054290108	7.15719174736508	7.42360114691142	7.09661867202009	0.37187901767315	0.130953402963369	0.483616828093559
Merged-chr3-38371900-4	chr3	38371402	38372402	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112914.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	3.86044623312247	4.01000029349616	3.89362436462616	3.60977376343865	3.83883123268963	3.75900374129445	-0.578685458364424	0.274270363982589	0.671699134465491
Merged-chr3-21997542-4	chr3	21997015	21998015	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-79137.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.87611538058247	4.01510356896983	3.78945698610042	4.2059663556156	4.27840124396844	4.11912472981573	0.883372539075909	0.0746386340711083	0.359551407618178
Merged-chr7-39655333-1	chr7	39654833	39655833	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	137567.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	3.33902769305541	3.20071988237948	3.57661082859207	4.48941988216108	4.9133703553617	4.87153072295067	5.74382604008005	3.78320358097759e-10	4.44622603906756e-08
Merged-chr16-94618698-4	chr16	94618185	94619185	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	RSINE1|SINE|B4	7266.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.17757370318773	5.28645010696907	5.19441183421935	5.05734993890418	5.1478325952962	5.22583130853897	-0.164720136446896	0.640847957431882	0.898653895821881
Merged-chr14-64638636-3	chr14	64638138	64639138	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13893.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.93428876743549	4.19206003665547	3.7962659141037	4.26623589751376	4.16665246844413	3.97726187286448	0.43711449255895	0.395565288006379	0.772924020393453
Merged-chr8-66490834-4	chr8	66490318	66491318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4288.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.23678717535265	4.41488716463161	4.26328388393086	5.02130030662726	5.18487721640065	4.89489638507057	1.7422978139022	3.92203557012965e-05	0.00128939050066909
Merged-chr2-39003342-2	chr2	39002842	39003842	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	1789.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	3.675251244378	3.9406197321668	3.87297461541701	3.9642373473855	3.80709600887278	3.94220342700151	0.213961629519881	0.681249327099774	0.914634600640861
Merged-chr2-167932798-3	chr2	167932298	167933298	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	471.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.89387759789689	7.830548800996	7.85847236384451	7.82695678782923	7.94415386810305	7.85000630685384	0.0226474330816098	0.914698950577454	0.980912729144991
Merged-chr1-72641192-1	chr1	72640692	72641692	+	621.0	f0_c57.idr	Intergenic	CpG	57941.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	2.57462883744794	2.61021058153178	2.54969152113967	2.86116870482619	2.65105754950829	3.10723551097628	1.60726545735423	0.0409880729890788	0.252576136952919
Merged-chr13-113614784-4	chr13	113614279	113615279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3785.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.26746603725429	8.48527860972313	8.06942830371773	7.94634474306015	8.48274837176254	8.13948313645159	-0.10488112566778	0.680405423764257	0.914217125833247
Merged-chr9-118629805-2	chr9	118629305	118630305	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	23096.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.58527010243574	3.70829024558471	4.0807718836515	3.9043824396534	3.78803806113438	3.60590312838355	-0.0777808031290369	0.89075247197003	0.974561590942893
Merged-chr6-123171770-2	chr6	123171270	123172270	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	5.28467032853106	5.38660969795374	5.31481803497917	5.29506242483711	5.49651305180792	5.28252761017782	0.0787227792415719	0.818234953073061	0.956886944398959
Merged-chr7-25628097-2	chr7	25627597	25628597	+	564.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146184, exon 1 of 1)	5' UTR (NM_146184, exon 1 of 1)	473.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	3.05809043573627	3.00264885710807	2.98253226117432	2.8037926199227	2.86539979671369	2.87306869470479	-0.826723501306133	0.232187655078489	0.62845798488942
Merged-chr7-67243376-2	chr7	67242876	67243876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20760.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	7.68993504637249	7.66496724881913	7.25891475223937	7.36517480827361	7.78918446221026	7.13658489939924	-0.12796273560288	0.654253367839281	0.903721536896116
Merged-chr17-44458752-2	chr17	44458252	44459252	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	270180.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	4.94129852750517	5.1878371475756	5.06243025068188	5.20458703978199	5.13198313317202	5.22686576546402	0.239690873633611	0.50811975181416	0.839631184767205
Merged-chr11-46811629-4	chr11	46811116	46812116	+	910.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	817.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	8.37548036383745	8.52922874504322	8.2469637246795	8.82733748103973	8.9832051761029	8.43896039547304	0.530408335536672	0.0266787933417573	0.194383863963785
Merged-chr14-30715643-4	chr14	30715143	30716143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	28.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	7.72742127904122	7.46287175084483	6.94218752523324	7.43045930770389	6.98202370297553	7.0582226056883	-0.376218172722035	0.214783259768906	0.607977993080214
Merged-chr8-120663865-2	chr8	120663365	120664365	+	865.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	B3A|SINE|B2	4247.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	3.35382395063948	3.14773619444572	3.36082787222234	3.4607265165785	3.39247231490466	3.69181828780177	0.869349803666271	0.154358728344664	0.523641596057681
Merged-chr1-165703234-4	chr1	165702719	165703719	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	4875.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.89222082659472	4.87887909496926	5.21266842464966	5.29056310998608	5.2543757075346	5.07806583693639	0.47235731208707	0.20536709670232	0.596047563330878
Merged-chr16-57166796-4	chr16	57166317	57167317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023175, intron 1 of 9)	intron (NM_023175, intron 1 of 9)	515.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	7.00512677006533	7.22064872215679	7.11238412844034	7.10171585441826	7.24015256592787	6.94071638838528	-0.0122205537268543	0.960727084982391	0.990386809359123
Merged-chr17-47503972-2	chr17	47503472	47504472	+	960.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1079.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.01268666990179	3.23094161050482	3.17983242562431	2.93802533946183	3.17664479795343	3.07717248967149	-0.318337510239251	0.6340192918945	0.896247399650521
Merged-chr11-70468092-4	chr11	70467589	70468589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	7.63518208388551	7.35538512584187	7.58354834151348	7.53087017009037	7.72137521729097	7.43985751716583	0.0693605461448803	0.77139264756384	0.943614978016208
Merged-chr15-59864897-4	chr15	59864397	59865397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-69938.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.26926550116058	6.34351238777533	6.42927493169381	6.16685001944019	6.19138426687704	6.06675012155893	-0.329849115480098	0.233995718768288	0.630244930563503
Merged-chr5-101974042-2	chr5	101973529	101974529	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	95892.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.22503647666624	3.9199517848172	4.09995737692425	4.23853622803256	4.46925507673636	4.16945203900607	0.607526338785688	0.210143711208479	0.602122517983304
Merged-chr13-42329463-2	chr13	42328963	42329963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27987.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.94516653272139	4.64711525087059	4.57788533325211	4.94546488633747	4.99124403516781	4.96315646566524	0.502843628245827	0.209460437295202	0.600992554015832
Merged-chr16-57167319-4	chr16	57166765	57167765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023175)	promoter-TSS (NM_023175)	67.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	6.96729259968483	7.04930785661867	6.98718946695697	7.00462020937074	7.06602835725703	6.96263637317588	0.0189771619981941	0.936477364532665	0.986037792257163
Merged-chr3-145929169-2	chr3	145928669	145929669	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	B1_Mus2|SINE|Alu	4907.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	4.12124949301772	4.12948351358766	4.45807686848039	4.08502583217527	3.85899444345837	4.56070916125604	-0.130574921468563	0.804974237862156	0.953700540836574
Merged-chr4-101020273-4	chr4	101019746	101020746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48792.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.87386776710395	4.95453959964741	5.39360901080003	5.01944597136564	4.96175263566709	5.1937730895834	-0.053551301643397	0.892065699543207	0.974942585822634
Merged-chr3-87358888-4	chr3	87358477	87359477	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1096.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	8.3196709089551	8.49658584557546	7.93783435674428	8.66903943908932	8.873101975135	8.11146557943307	0.443445963854367	0.118767800060832	0.460633499928298
Merged-chr17-46858025-2	chr17	46857525	46858525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26612.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	8.17279692318923	7.96317988548726	7.84997115379871	8.31729730413439	7.91835796998624	8.04607204803172	0.138824707075974	0.560571838913836	0.865261302076164
Merged-chr11-121746456-2	chr11	121745956	121746956	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR72_RN|LTR|ERV1	44029.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.3801174515366	7.57216917690988	7.58018490319069	7.719134385349	7.93298578427484	7.70152647907197	0.40848678101522	0.0748097765300266	0.360053236353362
Merged-chr9-110680874-4	chr9	110680385	110681385	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	RMER4B|LTR|ERVK	24382.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.82632469384628	3.60027587347595	3.88941604370721	4.12999140374489	3.98338231850257	3.90900958295311	0.750307172251925	0.150595484521228	0.517489620222838
Merged-chr9-60478826-1	chr9	60478326	60479326	+	540.0	f0_balb.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32209.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	3.07504198351169	2.8496184275375	3.16316324856722	2.81460686331577	2.90207350211133	2.88659973456444	-0.776667692420374	0.270378694046234	0.667299602638099
Merged-chr5-137670453-2	chr5	137669953	137670953	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	B3|SINE|B2	14300.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	2.242570130518	2.27097030922949	2.38329158851526	2.10869904707803	2.00282949025125	2.33137371064121	-1.08485331108984	0.239081080938276	1
Merged-chr19-12558346-4	chr19	12557831	12558831	+	976.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-15179.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.38351559866964	4.5413794741304	4.62697895163557	4.6361653919637	4.76048802984001	4.94722249251153	0.633344233059553	0.129734182520801	0.481808607863907
Merged-chr16-49902966-4	chr16	49902467	49903467	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	Lx9|LINE|L1	47313.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.77218683501028	5.05514938505098	5.2700354248705	5.24942521399694	4.95025946738187	5.27287452315738	0.249797706567749	0.525830801831966	0.849216438780215
Merged-chr19-45048245-4	chr19	45047739	45048739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362381, intron 1 of 10)	intron (NM_001362381, intron 1 of 10)	663.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	6.94993698898426	6.79148773860878	7.13561732556749	6.76037501586728	6.4707517965641	7.1227990320993	-0.247321814930912	0.400977588918904	0.777112386890673
Merged-chr11-70649492-2	chr11	70648992	70649992	+	547.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027445, exon 4 of 9)	exon (NM_027445, exon 4 of 9)	2205.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	4.00601977985753	4.03757382058705	4.64629957839047	4.32209085351668	4.15257300692136	4.74502902466638	0.436088055539998	0.411725974950437	0.784025679251701
Merged-chr11-69686651-2	chr11	69686151	69687151	+	954.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011614, exon 7 of 7)	3' UTR (NM_011614, exon 7 of 7)	-1097.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	5.21456139802844	5.43399137456605	5.20393799396883	5.04701867082677	5.11457945684276	5.53238504577259	-0.113614734626007	0.761475527265248	0.941258867861232
Merged-chr6-136736008-3	chr6	136735504	136736504	+	861.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 12 of 25)	ORR1E|LTR|ERVL-MaLR	45738.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	2.27484930182194	2.27154629582915	2.41186383775475	2.19936108862597	2.3323878091167	2.08670283362261	-0.707890142032311	0.435318055912241	1
Merged-chr2-158405682-2	chr2	158405199	158406199	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-4154.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	4.36702791904681	4.60005746489763	4.55047187474215	4.79441536162737	4.87151522274843	4.77780400024369	0.733304059783217	0.0739162723191744	0.357437391011441
Merged-chr6-124813717-4	chr6	124813202	124814202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	594.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	6.41706215683307	5.99543707099264	6.42699229592691	6.43976661793513	6.57301742697661	6.57298923663212	0.393507317439161	0.17557156372582	0.555563740582127
Merged-chr9-44269302-1	chr9	44268802	44269802	+	652.0	f0_c57.idr	promoter-TSS (NM_001163742)	promoter-TSS (NM_001163742)	-703.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	3.99768720935618	3.98900694275454	4.18132657194865	4.08067895766423	3.87557229140967	4.11403952412179	-0.0954344809161795	0.846840088880461	0.964111312125802
Merged-chr4-53217747-4	chr4	53217261	53218261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28435.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	7.67484347557916	7.38627838895181	7.40328245633294	7.30006592212481	7.24287796469694	6.9467690585991	-0.470661756388966	0.0620392737998186	0.323491855548924
Merged-chr8-40965061-3	chr8	40964552	40965552	+	887.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 2 of 5)	ORR1F|LTR|ERVL-MaLR	38819.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	2.51250837642597	2.5432501104991	2.44206762752102	2.66857901494959	2.52425279942786	2.88965947475623	1.10471572198063	0.166307100891721	1
Merged-chr17-26569322-1	chr17	26568822	26569822	+	849.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1MB1|LINE|L1	7810.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.04936980534823	3.10861839877615	3.0960844733297	3.04628835616921	2.88612558961153	3.22416836923431	-0.148538999360006	0.824564299632664	0.958596193929081
Merged-chr18-4368431-4	chr18	4367934	4368934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-7158.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	5.32595902341359	5.40534361775795	5.6968571778639	5.77047687264611	5.60903313643596	5.75839876284109	0.443934613265699	0.180771783276978	0.562841800215978
Merged-chr6-120473653-4	chr6	120473159	120474159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 3 of 12)	intron (NM_008359, intron 3 of 12)	10462.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.09986658931314	6.00565672946979	6.24850130043639	5.82054922675376	6.05007455478354	5.9691508338624	-0.277894308371464	0.349684947044094	0.737704147134326
Merged-chr12-117534072-4	chr12	117533552	117534552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	CpG	17573.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.54330419957374	3.90784549581755	4.09575539746852	5.13058157142805	4.41364626823901	4.41840774788309	1.19866161943136	0.0278688340323939	0.199373221749414
Merged-chr12-111557740-4	chr12	111557251	111558251	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16651.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	3.76390622202872	3.39982007827037	3.44609330472532	3.43616525688327	3.88941490844375	3.57564211051765	0.359798707527903	0.556628978564238	0.863705610149867
Merged-chr5-92270656-4	chr5	92270169	92271169	+	704.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025972, intron 3 of 10)	intron (NM_025972, intron 3 of 10)	7512.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	3.14980781944452	3.00933182377383	3.30400511133516	3.28638479412156	2.95227905842097	3.028964641325	-0.253626627021439	0.707339651506345	0.923337742537063
Merged-chr9-37246631-7	chr9	37246287	37247287	+	907.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8951.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	6.50820197398166	6.49740118458165	6.45631729437068	6.39281112578528	6.61130581756778	6.1252354932576	-0.132033737003155	0.64494005598627	0.900371814385472
Merged-chr8-35378829-3	chr8	35378260	35379260	+	750.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3019.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.2587921771375	4.19586496693315	4.1384093073753	4.3873497766482	4.26499906056933	4.20764524621856	0.241251063032118	0.598553263994411	0.880808927175713
Merged-chr2-118598208-4	chr2	118597678	118598678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-33.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	6.37869688228879	6.31817279563739	6.2526810999917	6.9600504290474	7.09429216203906	6.63878864376906	0.953081162086337	0.000520218095948797	0.0108053687787587
Merged-chr3-79982564-4	chr3	79982056	79983056	+	940.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	96626.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	2.80893536311777	2.64254572547381	2.91857266728324	2.72405547547964	2.59596267962189	2.62783944078666	-0.771963143144854	0.306469142763532	0.702691772694074
Merged-chr10-62452542-2	chr10	62452042	62453042	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-2804.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	2.81945616042414	3.17369975478431	3.6941736697981	3.30124112447149	2.89296657426707	3.52699259896217	-0.0464023355712225	0.953117050336623	0.989359300570295
Merged-chr2-58497163-3	chr2	58496665	58497665	+	896.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64245.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.55672285839047	4.69157013200414	4.79743736955278	4.87334751675241	5.01015024438007	4.8629927988537	0.554192922750763	0.159906110102545	0.532410372110461
Merged-chr9-23669426-4	chr9	23668934	23669934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-428584.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	3.55739048349524	3.36356515853422	3.76766495861665	3.01216330735055	3.04731721626961	3.33286019848364	-1.80130670537588	0.00710622815164573	0.0790078877661862
Merged-chr14-64657819-3	chr14	64657314	64658314	+	937.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	5283.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.3796915227785	4.25391318969098	4.50703781482252	4.50277197436594	4.27446130577125	4.12324233446061	-0.167706163255586	0.717663241390209	0.927141395317297
Merged-chr9-108849460-2	chr9	108848900	108849900	+	897.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 35 of 36)	exon (NM_001359573, exon 35 of 36)	-4643.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	2.83683902989095	2.51680897498698	2.80727199416159	2.91321280331195	2.61353010863395	3.05600850765958	0.718422717043157	0.358692564886477	0.7450533198301
Merged-chr8-36657999-1	chr8	36657499	36658499	+	626.0	f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-44056.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.49168760202067	2.65361657339055	2.66615835365834	2.48239632620217	2.18055488288888	2.4225398631439	-1.55179748475413	0.0797241295167263	1
Merged-chr9-104281916-4	chr9	104281411	104282411	+	917.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18981.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.35855597130017	4.97747623085637	4.6197272971195	4.91346791311629	5.01572621569543	4.59720380474221	-0.362993152563533	0.416760545190667	0.787630858640525
Merged-chr19-3928139-4	chr19	3927640	3928640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	1576.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	6.50366886271157	6.30092805073174	6.77796208874499	6.6110661849392	6.93041417452596	6.47479898588121	0.261099013950733	0.37956153061954	0.761960372847995
Merged-chr7-19271812-4	chr7	19271272	19272272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	82.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	6.74605554045658	6.63405682510241	6.8754216241246	7.0805984393538	6.92762595813789	7.31213803898822	0.55109088723449	0.0348818842809015	0.22904432914833
Merged-chr10-79780275-4	chr10	79779753	79780753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031380, intron 3 of 4)	intron (NM_031380, intron 3 of 4)	2979.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	4.64543267416432	4.14171494210298	4.53906767938064	4.62120290774584	4.17253515822341	4.56531638571369	0.00947212028085766	0.984403342161116	0.996597633599236
Merged-chr6-114294383-4	chr6	114293889	114294889	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	11754.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	5.11672249297382	4.90969777853101	4.90324778008808	5.12478017131901	5.21061013740618	4.58804764792322	0.0725328022078598	0.862219039436988	0.967996224966109
Merged-chr5-115977869-4	chr5	115977364	115978364	+	964.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 27 of 46)	ORR1D2|LTR|ERVL-MaLR	46564.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	4.86492255157362	5.13578894535471	5.25547805581785	5.26367675683747	4.89723694442806	5.31844839822227	0.15401780531312	0.693606848700433	0.918960880648635
Merged-chr2-153120306-4	chr2	153119797	153120797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	11829.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.7301364959964	6.65054684384694	6.75065609428322	6.43742220562992	6.61274661178836	6.669129575071	-0.212410945108668	0.411691949724823	0.784017205335022
Merged-chr17-71265828-3	chr17	71265341	71266341	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	45170.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.86915524709832	7.83523944916785	7.41254653441367	5.41250254523397	5.23343882108951	5.53038891721447	-3.92852185000194	2.40323763579902e-37	6.66561990665217e-33
Merged-chr4-41274643-2	chr4	41274143	41275143	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026872, intron 1 of 28)	intron (NM_026872, intron 1 of 28)	492.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	6.84013021879629	6.95906736230619	6.58502002566815	6.86378026053706	6.89607366015247	6.35273634992119	-0.111746660680641	0.703317111510067	0.922108924938678
Merged-chr7-24442482-4	chr7	24441962	24442962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3220.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	5.16686751639973	5.26615089727158	5.45907133206796	4.90858728850754	4.69505937387437	4.76573901283102	-1.08344090872333	0.00441424563575434	0.0560764199786026
Merged-chr5-67815622-4	chr5	67815125	67816125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	31806.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	7.07215711077395	7.10798416849115	7.14449876347506	7.09702606165176	7.2245800778377	7.30665180712721	0.154969837450875	0.510378292242549	0.840886591313675
Merged-chr1-131378178-3	chr1	131377632	131378632	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-98569.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.91206463646947	3.89990531129058	3.80015600362569	3.80837245072981	3.72868830195835	3.86985293344746	-0.245297868013611	0.634526207055185	0.896350313439852
Merged-chr4-40271581-2	chr4	40271081	40272081	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033305, intron 3 of 3)	intron (NM_001033305, intron 3 of 3)	-1740.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	3.11954085069806	3.47992855199902	3.37368707013174	3.25686922762892	3.23881831018232	3.60009245752389	0.136844076420048	0.830921915044949	0.960370002015736
Merged-chr7-63997260-1	chr7	63996760	63997760	+	696.5	f0_balb.idr	Intergenic	Intergenic	-58345.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	2.54006591551686	2.53475703180688	2.50318862230574	2.56763275913018	2.54338428382562	2.82311727797729	0.673867689312012	0.386397352562599	1
Merged-chr14-32801868-3	chr14	32801380	32802380	+	828.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15917.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	3.3405581213025	3.42536145852822	3.86310160128126	3.39240820824595	3.1628353923306	3.65242286120763	-0.529388545840851	0.412997739137823	0.784726474670108
Merged-chr10-41385656-4	chr10	41385159	41386159	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64699.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	6.6879361624071	6.98377310411946	6.79687038119793	6.90051934044561	6.91036189281008	6.98382494426542	0.151365690698354	0.549952044256955	0.860509903840749
Merged-chr17-57456798-2	chr17	57456298	57457298	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 17 of 22)	Lx3A|LINE|L1	88516.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	3.4777405907847	3.58904003560727	3.62501149156964	3.55730684791499	3.41907383456995	3.53643484130401	-0.221680292162527	0.696045714872994	0.919291538728398
Merged-chr19-6870192-2	chr19	6869692	6870692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-11981.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	6.67743920817078	6.51223766554194	7.11276104980355	7.52809035968937	7.63742695776478	7.15832280416593	1.02712301630425	0.000382690565886436	0.00850278147030136
Merged-chr9-20492685-4	chr9	20492187	20493187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	59.0	NM_146221	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	7.44858517177735	7.83407644307694	7.61009293231924	7.86139957727733	7.91576474570895	7.5893484849037	0.229502343409833	0.348414841665751	0.736276879881241
Merged-chr5-140771888-4	chr5	140771384	140772384	+	950.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	47757.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.4122598964323	5.3988479142565	5.68785144224854	4.88153919653331	5.14519114883236	4.97120004056061	-0.981053498125135	0.00781484630302265	0.084668975414311
Merged-chr7-92565052-4	chr7	92564535	92565535	+	938.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025515, intron 1 of 8)	intron (NM_025515, intron 1 of 8)	3886.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	3.68923738569325	3.76585799816784	3.89137721928844	3.68231222522403	3.77644278461972	3.76267393620297	-0.123961367414605	0.814889312062179	0.956370078970016
Merged-chr7-16288049-2	chr7	16287549	16288549	+	792.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-1254.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	2.8445017886892	2.70715186538826	2.72291320005319	2.77818693961696	3.02119713402859	2.98095195378961	0.856605286560208	0.236370868128472	0.632720263621021
Merged-chr17-35516282-2	chr17	35515782	35516782	+	971.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	542.0	NM_001163764	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	3.22019080547088	2.9177127081735	3.12640385742952	2.97804602275839	3.01686295038745	2.96009188465582	-0.48487400518587	0.475822043510508	0.82218949187564
Merged-chr10-34199784-3	chr10	34199285	34200285	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	7766.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.66475364851702	5.59470962267514	5.86948484296145	6.07629069783471	5.94127248807448	6.24894081150715	0.67367734544791	0.0296769435805948	0.207422017761792
Merged-chr3-88603942-4	chr3	88603435	88604435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12272.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.22217859596229	6.12313346758984	6.27004291462926	6.10346267947818	6.13883110240897	5.88426769351794	-0.248362297528538	0.390634318054393	0.769815037696751
Merged-chr15-82349081-2	chr15	82348581	82349581	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026914)	TTS (NM_026914)	3035.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	2.99908317473556	2.95104923426883	3.13354840557921	3.0269899994358	2.94744620851671	3.20466268586404	0.145605094444603	0.827535798629426	0.959467071709035
Merged-chr11-88863947-3	chr11	88863482	88864482	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126433, intron 3 of 4)	CpG	604.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	3.14812634514934	3.25147450750602	2.92604674209707	2.91058994315033	2.75743898424432	3.06110587200525	-0.997010998125928	0.162675013334951	0.536188662408322
Merged-chr19-32305178-2	chr19	32304678	32305678	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	44138.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.25763531550623	2.31393598705038	2.45141806054754	2.07656453102929	2.2112804687284	2.14187653165533	-1.40709444102698	0.123760821822018	1
Merged-chr18-20886502-4	chr18	20885918	20886918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTEa|LTR|ERVL-MaLR	9660.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	6.74713122528839	6.96411042067618	6.66810867441269	6.77101441470014	6.9576281068881	7.13517616705517	0.235553258559532	0.374579643132411	0.758106266771134
Merged-chr10-127577712-2	chr10	127577212	127578212	+	964.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 22 of 88)	intron (NM_008512, intron 22 of 88)	-43153.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	4.30190655778958	4.11584580439983	4.49698880214323	4.1924821456125	4.18198161546174	3.97883794362152	-0.489429654157623	0.312714619587145	0.707401736307727
Merged-chr18-53179003-4	chr18	53178576	53179576	+	609.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	B1_Mur4|SINE|Alu	2784.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.25614788397954	4.32626263082088	4.70570538827985	5.24984388793089	4.64673621083078	5.08683319892187	1.35264374871846	0.00302634580727163	0.0424075752663284
Merged-chr3-56270628-3	chr3	56270130	56271130	+	712.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86929.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	4.21435761526924	4.07227098336063	3.80999749183717	4.10254533261466	4.25102091593892	3.99031969200472	0.21177448602443	0.677789285275077	0.913180344177175
Merged-chr16-46148765-4	chr16	46148251	46149251	+	766.21875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6326.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	4.36987375039895	4.59856764057254	4.33086659658958	3.97512179371462	4.00549713617722	4.26509891793427	-1.00032090383531	0.0351641977442723	0.230081195714823
Merged-chr15-62003042-4	chr15	62002528	62003528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17687.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	5.30235932557044	5.21841534156895	5.35001013601499	5.39886515261033	5.10864938561187	5.73218166627175	0.266416754968386	0.475101229920025	0.821727753368561
Merged-chr6-122922649-2	chr6	122922149	122923149	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 1 of 5)	intron (NM_199311, intron 1 of 5)	801.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	6.58280160865117	6.70709710098332	6.69681399932717	6.77913139280981	6.84705904071878	6.81698929115088	0.24080026869664	0.334801965942064	0.725198429760335
Merged-chr2-33870522-4	chr2	33870005	33871005	+	860.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	17441.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.47758918271014	6.11595207617897	5.50168843676198	5.34804308565723	5.62211958535821	5.44311056138451	-0.48953059164697	0.19128262432017	0.577868954160137
Merged-chr4-99937451-3	chr4	99936964	99937964	+	954.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	8013.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	4.85928641391059	4.62648124365446	4.87249727771769	4.48258514258922	4.57483328946175	5.03665100704327	-0.181197268889853	0.676427358300911	0.912525597578286
Merged-chr16-4558728-4	chr16	4558232	4559232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	CpG	988.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	6.35070823591867	6.50402381979864	6.48473009623944	6.32603234142151	6.64269007463724	6.18875934894053	-0.0522905491576457	0.856572482424556	0.966557736209816
Merged-chr7-98085576-4	chr7	98085073	98086073	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23675.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	6.7971401308722	6.96258641555397	6.78477886674635	7.10904749507541	7.24071911698853	6.66111660129489	0.28427575921372	0.30542712528281	0.701557468278683
Merged-chr15-36608515-4	chr15	36608022	36609022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008774, exon 1 of 15)	5' UTR (NM_008774, exon 1 of 15)	451.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	8.40416790604657	8.42073944530283	8.26715959708831	8.4861174990415	8.4779192500038	8.33500955053838	0.0958472209025356	0.639919613975185	0.898255496259518
Merged-chr17-26230845-2	chr17	26230345	26231345	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13397.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.12830016242871	7.12193105887403	6.80333750063651	6.82596257572395	7.36392406305763	6.60668178836663	-0.0657426834169596	0.831275069461131	0.960444904168444
Merged-chr12-52319283-4	chr12	52318826	52319826	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	161283.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.77795727938388	4.78205745537262	4.64488074822829	6.0406488524643	5.88147519526926	5.17788384744059	2.04548151110051	6.81432918451514e-07	3.86244347946278e-05
Merged-chr16-11286084-4	chr16	11285582	11286582	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-27727.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	4.01060314998014	3.73957371302883	3.82702931538799	4.37613508978459	4.1780911002011	4.00463816122394	0.977326208834307	0.0564085526511263	0.306153730936985
Merged-chr10-18049350-4	chr10	18048807	18049807	+	734.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-6633.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	3.18398265373473	3.18872022796081	3.61033220755424	2.99240462721229	3.00895734860447	3.53542725148176	-0.558052142682683	0.42822961163707	0.795060269171428
Merged-chr15-3270649-4	chr15	3270144	3271144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-123.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	6.45592867800214	6.39186020299276	6.87465449663634	6.8824146698896	6.7670879111327	6.86322540945274	0.404610840883373	0.144808544707299	0.507645438049158
Merged-chr2-181305088-4	chr2	181304581	181305581	+	868.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9419.0	NM_009133	20262.0	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	2.79516092866341	2.46420031220075	2.85964141721359	2.81765895512301	2.63239737040776	3.10214816886102	0.731309853714732	0.360941158933418	0.746938274913623
Merged-chr1-165708052-4	chr1	165707530	165708530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178593)	promoter-TSS (NM_178593)	64.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.05291904952986	7.09632321052761	7.34596493100883	7.30920640157874	7.32161750326691	7.37124649413856	0.25294311557464	0.288479240246388	0.685900692148288
Merged-chr5-21221087-3	chr5	21220585	21221585	+	923.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34818.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.63563665282045	3.69104925154385	3.5775091530199	3.86807059838431	3.51856716940439	3.80661460237144	0.322441589836884	0.563867892489487	0.866003167305275
Merged-chr7-145294030-2	chr7	145293530	145294530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6879.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	5.10623595061784	5.12962933960564	5.56650022393485	4.90637390508472	4.87145412329508	5.57814876195287	-0.258022357966639	0.546452814862355	0.858776736684105
Merged-chr17-32403581-3	chr17	32403078	32404078	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347343)	promoter-TSS (NM_001347343)	4.0	NM_178785	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	3.58190858525304	3.83759782507954	3.63396257827982	3.77043152382576	3.62798593378325	3.65068014366387	-0.032163770866147	0.953419078009325	0.989446911725587
Merged-chr7-81342936-2	chr7	81342436	81343436	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	2298.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.11283178707278	3.0578602073712	3.1321053265156	2.9857118805674	2.81725477290019	3.56708979366732	0.255586954554872	0.727123516304183	0.930106435835116
Merged-chr7-127026908-2	chr7	127026408	127027408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-429.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	6.74221207626694	6.23037296163564	6.69149274669697	6.95106284619654	6.60011713801097	6.41841043051707	0.172459280413598	0.578291591814968	0.872407113854157
Merged-chr6-57533695-4	chr6	57533109	57534109	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1817.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	5.04203195971888	4.99795075001084	4.85536751999046	5.10232816813023	5.23065737816823	5.33061990004038	0.516153926543704	0.159140573448523	0.531158781765317
Merged-chr17-80483083-4	chr17	80482570	80483570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2617.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	6.30345458740719	6.54616016620153	6.43666768963583	6.55846703216011	6.61257714709506	6.63473930278295	0.270086358607103	0.308598024883788	0.70458397876447
Merged-chr3-123506420-2	chr3	123505922	123506922	+	694.200012	f1_balb.idr|f1_c57bl6.idr	exon (NM_008939, exon 11 of 11)	exon (NM_008939, exon 11 of 11)	1644.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	3.46578097757186	3.03257023817432	3.43990968693487	2.97201179765918	3.26983931488692	3.56045088833808	-0.157005475451304	0.823232233557284	0.958249506040995
Merged-chr5-23783659-4	chr5	23783160	23784160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289780)	promoter-TSS (NM_001289780)	51.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	3.93582741739322	3.79470187903193	3.92189111773285	3.77602133334562	3.55620054412883	3.45265755991014	-0.929878322369542	0.0956239675972952	0.412305891586472
Merged-chr4-150473036-4	chr4	150472560	150473560	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179114.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.27342513709315	7.39116919779653	6.66114806372817	6.32656414249128	6.632522761739	6.09860757750458	-1.19961874917505	0.000233490572774082	0.00567414824164305
Merged-chr15-78173380-1	chr15	78172880	78173880	+	848.0	f1_c57bl6.idr	intron (NM_025931, intron 1 of 6)	intron (NM_025931, intron 1 of 6)	728.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	3.96004826699429	3.94506270932871	4.01939619567781	3.6816535574399	3.79206744133256	3.84584850050566	-0.630232059363183	0.219534085743879	0.613735463896719
Merged-chr2-170116894-3	chr2	170116394	170117394	+	791.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	14326.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.85520401782208	3.78276898762656	3.84238142420654	3.91914908160487	3.62667119949341	4.35126371397454	0.499003567282247	0.375717870616594	0.758886605954294
Merged-chr10-84411468-1	chr10	84410968	84411968	+	703.666687	f0_balb.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	29003.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.79653705726709	4.66497772191422	4.91026257962544	4.48826084332319	4.80092758294496	4.83263149274108	-0.165476020348486	0.688581408233586	0.9172299553909
Merged-chr19-10295990-2	chr19	10295490	10296490	+	812.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	8887.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	6.38888042938	6.61234246087709	6.67633751594473	6.18102482405035	6.45226066790949	6.41447287554569	-0.330782658512694	0.236998018246666	0.633436049796627
Merged-chr6-115996394-4	chr6	115995788	115996788	+	743.71875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.69551758877579	5.71664061522335	5.7919600348215	5.28415617339334	5.8110014691196	5.53350138232367	-0.294109680266389	0.391904952297821	0.770782330002482
Merged-chr14-61744135-3	chr14	61743622	61744622	+	983.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-61749.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.54354635421261	3.4273973616566	3.81346207659749	3.39516543028371	3.35281706324707	3.31003144187352	-0.90531522851482	0.133484680354493	0.488692066303093
Merged-chr2-78046549-2	chr2	78046049	78047049	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4628.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	2.60341303854102	2.68772997925134	2.81866171631285	2.58458694308631	2.57845765706354	2.71157830653959	-0.440534889546172	0.558530287286419	1
Merged-chr19-46517729-2	chr19	46517229	46518229	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16081.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.34424031983196	3.4667500665084	3.93472197396213	3.42119873861298	3.48575767340778	3.77606702881914	-0.118354362733007	0.848647103632734	0.964356989789491
Merged-chr1-157016781-4	chr1	157016278	157017278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-77152.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.37277978949846	6.12137865406932	6.37718500867416	5.51476981785073	5.6363669156152	5.97817321265748	-1.0098459762594	0.00141396335031804	0.0236631259962316
Merged-chr8-23236972-2	chr8	23236452	23237452	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024240, intron 2 of 7)	intron (NM_024240, intron 2 of 7)	716.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	4.27986086934386	4.30291790894583	4.63601422282887	4.44594715981338	4.3708086378113	4.50802202601039	0.0866987909461307	0.846448823556436	0.964017504522256
Merged-chr9-44317863-1	chr9	44317363	44318363	+	1000.0	f1_balb.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	2419.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	4.62874229127889	4.85276100938522	4.66241878327904	4.81981926843381	4.80191905946862	4.46749282000209	-0.0136326435652638	0.974084787961454	0.99422005073929
Merged-chr5-35727179-2	chr5	35726679	35727679	+	798.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	2097.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	4.61461017203996	4.45024420269828	4.60282471867812	4.60308314493019	4.65349865662508	4.36536922693922	0.00276053928872421	0.994865280446019	0.998961028701257
Merged-chr19-10603039-3	chr19	10602530	10603530	+	933.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1228.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	4.56642264273711	4.77542829826752	4.98881767144283	4.56127398117018	4.56517100603208	4.53366222587017	-0.531968367019664	0.207121380357557	0.597920729067479
Merged-chr5-65863014-2	chr5	65862514	65863514	+	778.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	-555.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.33439597875402	6.05356847831999	5.9892642376027	6.09114655033788	6.63355210924996	6.49894219850053	0.482575585892071	0.123694652416681	0.470659623115383
Merged-chr4-8838257-3	chr4	8837763	8838763	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 14 of 36)	(TTTTG)n|Simple_repeat|Simple_repeat	86939.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.48598987610478	6.51978241474881	6.68180547956925	7.14847850189711	7.4843389589781	7.1500605269787	1.10648529727043	1.97767402842793e-05	0.000723969646095167
Merged-chr8-126945911-4	chr8	126945401	126946401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	20.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	8.07814627496179	8.12788716228726	7.70063489649177	7.88640264021078	8.00019531334891	7.62290053423988	-0.194702868908663	0.431985194003389	0.797172952089782
Merged-chr7-110268164-3	chr7	110267679	110268679	+	905.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 6 of 11)	intron (NM_009302, intron 6 of 11)	46476.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.9648696938022	3.82383663860957	3.88425154744362	4.00487198181974	3.87377579341519	3.74408870100572	-0.0311619273368612	0.95183366117236	0.988976128252309
Merged-chr10-77267209-4	chr10	77266712	77267712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030262, exon 8 of 9)	exon (NM_030262, exon 8 of 9)	7912.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	6.80779637633775	6.60908217376646	6.55236231903437	6.47815054889006	6.75644390286821	6.54085850451872	-0.0966444531193447	0.720934860254955	0.928324696220711
Merged-chr17-71125663-4	chr17	71125162	71126162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 36 of 36)	intron (NM_001083934, intron 36 of 36)	-57870.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.82281151065298	4.64487900163956	4.63158037339354	4.26036690370053	4.54122788262501	4.65810864840454	-0.512296202678769	0.23654200228982	0.632745673713476
Merged-chr7-25680265-4	chr7	25679747	25680747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-533.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	7.22320125012092	7.16246877052249	7.42948814325013	7.27788924358438	7.53135750121406	7.43538190311422	0.224269341436345	0.350618609956499	0.738607896333082
Merged-chr15-98660714-2	chr15	98660214	98661214	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	L2b|LINE|L2	2175.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	3.46400002761098	3.53827268618255	3.52169085831908	3.21209482513064	3.34878351893742	3.31604887200542	-0.824003206664637	0.169205419267284	0.545918476485432
Merged-chr16-24859649-2	chr16	24859149	24860149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	137794.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.34575549623814	5.25836655815765	5.33684353178145	5.37742589953713	5.32567734132578	4.98629049114816	-0.120043294233444	0.737799139739151	0.933858424870961
Merged-chr1-105171222-4	chr1	105170725	105171725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-184782.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	5.53958963337307	5.68198305861403	5.97251777744948	5.98923265422557	6.29870841557391	6.03344785381578	0.686214416253382	0.0317398973524131	0.216069162963232
Merged-chr9-118645388-2	chr9	118644888	118645888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	38679.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.64603363258118	6.9287538147861	6.94878684322217	6.30243256675427	6.47461055130437	6.65985081755197	-0.576137753542144	0.0362610104414528	0.234273325321252
Merged-chr5-143065008-2	chr5	143064508	143065508	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	48012.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.09187949721155	4.55309711989078	5.41386809228902	4.98817805006524	5.18423067039588	5.365643262021	0.261134591765305	0.551386020544021	0.861186823039454
Merged-chr6-29277341-2	chr6	29276841	29277841	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-3800.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	2.42259006821783	2.49301615964531	2.6544659379253	2.66405615683703	2.24903758330383	2.72826042860108	0.218036901904631	0.799037461837334	1
Merged-chr7-75794463-4	chr7	75793940	75794940	+	814.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-53898.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.77365623275821	4.17210634695603	4.03772824558526	4.39845485589738	4.22331476291775	4.422234995303	0.945384881380817	0.0567355904267466	0.307050197157772
Merged-chr1-53742245-3	chr1	53741754	53742754	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35470.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	3.80921882266537	3.66673397952262	4.16618945679978	5.3606365160212	5.36614131674579	5.50411397025939	4.2211079594166	3.64802751138661e-15	1.02896634972019e-12
Merged-chr2-120629770-2	chr2	120629279	120630279	+	656.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20184.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	6.46534493461502	6.59005075944717	6.70105949503692	6.84054322461186	7.01154357424006	6.64551029717438	0.42027939552386	0.115471701900687	0.45366277255564
Merged-chr10-121426734-1	chr10	121426234	121427234	+	763.0	f0_c57.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	49516.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.20315832018981	2.89971127558929	3.10774606384394	3.16340296613738	2.90059418819199	2.80541999361923	-0.49453613748641	0.490160052880172	0.830031090218234
Merged-chr1-157407724-1	chr1	157407224	157408224	+	721.5	f0_balb.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-4628.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	4.61055229934866	4.5296080587042	4.57847458014909	4.09817222339617	4.21666160481076	4.30761617274024	-0.956957890926745	0.0314221218044539	0.214750084795507
Merged-chr2-122378688-2	chr2	122378188	122379188	+	741.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9770.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	4.96535601771645	5.4109798918681	5.02826317264909	4.75346175024008	4.85436911694142	5.02302226203988	-0.604493938909016	0.127688762191133	0.477751990844904
Merged-chr8-20996326-2	chr8	20995826	20996826	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-29219.0	NM_183253	66298.0	Mm.482941	NM_183253	ENSMUSG00000074447	Defa21	2010016B13Rik|Defcr21	defensin, alpha, 21	protein-coding	2.9423106142127	3.15342572330413	3.02990286125827	2.73511265932748	2.57207310463931	2.66633212664694	-2.15218610623895	0.00584892167414368	0.068497828946115
Merged-chr19-5946264-4	chr19	5945759	5946759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	17947.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	7.44142661800804	7.49396035981078	7.36788769056124	7.19981309149807	7.24665560497026	6.94653232250191	-0.432960098652442	0.0707835939334854	0.348868437257914
Merged-chr9-95510585-2	chr9	95510085	95511085	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	1411.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	5.27118386041294	5.22108566628496	5.37052184084248	5.9146684778638	5.77709495888758	5.49617448447466	0.883719187607334	0.00863635356668343	0.0910089638996955
Merged-chr2-155402154-3	chr2	155401616	155402616	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019825, intron 11 of 13)	intron (NM_019825, intron 11 of 13)	20260.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	3.65353762560233	3.74733044334424	3.82347073073518	3.65506198686102	3.55589479709087	3.58404158790638	-0.488826695587902	0.37028425130325	0.75468690157258
Merged-chr10-25312066-2	chr10	25311574	25312574	+	668.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12911.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.59233561592983	2.77805885722815	2.56768315207582	2.78710988894395	2.7189967366842	3.01045858798448	0.975905505243143	0.202816025391666	0.592772302593993
Merged-chr3-88139495-3	chr3	88139001	88140001	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2871.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	8.05936277269619	8.43017044768892	7.97410360765418	8.03173955172641	8.33339500672163	7.85144564344741	-0.113102766233463	0.659993396893698	0.905810817177861
Merged-chr7-44360103-4	chr7	44359622	44360622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	14908.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	5.3289231935004	5.01566504737553	5.18135926225674	5.20071428452509	5.14760567165754	5.07492420950423	-0.0761277359050023	0.834240774044814	0.961273502395445
Merged-chr10-67550270-2	chr10	67549770	67550770	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	5.7604486133301	5.46655907722214	5.33846872170162	5.81785971111142	5.69728645671425	5.33615591652454	0.185226663054505	0.603040652032695	0.882510932047143
Merged-chr12-85219352-4	chr12	85218826	85219826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145445)	promoter-TSS (NM_145445)	-155.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	6.03428719777923	5.9781965249942	5.91974658096299	6.19676173399693	6.02602160869186	5.88178666903963	0.11243151467441	0.704425232104645	0.922410722571361
Merged-chr13-113590390-4	chr13	113589925	113590925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28139.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.33430473503231	8.18293102948845	7.71876999216547	7.89968586258258	8.18709953414424	7.93833880897949	-0.132690787403533	0.606997977508248	0.884418509188691
Merged-chr4-83303158-2	chr4	83302658	83303658	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	21031.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	3.58858695283589	3.7175392021519	3.24116847923926	3.3821888304759	3.09778045957441	3.37549720062948	-0.965129432212248	0.13650629692244	0.493594108201959
Merged-chr5-108627218-4	chr5	108626727	108627727	+	970.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	2550.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	4.83713535812344	4.99892925803333	5.09767139182135	4.93656365832974	4.9444925621126	4.91988078876939	-0.0903415020860171	0.810895863098352	0.955096593239846
Merged-chr13-119453409-2	chr13	119452909	119453909	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 9 of 10)	B1_Mus1|SINE|Alu	-9350.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	4.44344627435737	4.44031599276988	4.55262992971046	4.33855521715148	3.67665412222452	4.61835985910553	-0.54218569621027	0.329406713322438	0.721370455053117
Merged-chr12-102498693-8	chr12	102498131	102499131	+	814.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199004)	TTS (NM_001199004)	28721.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	5.83609934785204	5.85401218018318	5.85529354251113	5.51108815132016	5.26699950571181	5.43213994144305	-0.835855530290681	0.00910026591210447	0.0942865055428202
Merged-chr10-79768136-2	chr10	79767636	79768636	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1184.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	2.78571608516015	2.77793429613932	3.23021402244571	2.82155240318752	2.81158704735633	2.97274674806106	-0.352780925666807	0.630118794194013	0.894603546056775
Merged-chr7-29180691-4	chr7	29180231	29181231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026545)	promoter-TSS (NM_026545)	-58.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	6.67711379562573	6.57747400970953	6.17446287625074	6.91869505860722	7.01676515294499	6.78384408390312	0.637798703967309	0.0239049269252258	0.181750836951223
Merged-chr17-10839595-2	chr17	10839095	10840095	+	772.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	596.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.97836387610428	5.07367092910692	4.39982416825671	4.38996810501198	4.66389939876875	4.32138875221356	-0.898507806812227	0.0583572709438408	0.312188832319585
Merged-chr12-86950370-2	chr12	86949870	86950870	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3027.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	6.55042844075624	7.03068190616865	6.01168909500687	6.19635433076049	6.30023420023852	5.83181836696761	-0.776117143934469	0.0350409509622696	0.22970829966663
Merged-chr2-144369586-3	chr2	144369047	144370047	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166640, intron 1 of 10)	intron (NM_001166640, intron 1 of 10)	512.0	NM_181417	228714.0	Mm.227925	NM_181417	ENSMUSG00000027425	Kat14	2510008M08Rik|ATAC2|AU023459|Csrp2bp|D2Ertd473e|D2Wsu131e|E430020F17	lysine acetyltransferase 14	protein-coding	7.2625104648474	7.28773769988523	7.53944744708056	7.32636202273488	7.25606484970237	7.13927846220524	-0.173034657434785	0.470894415933157	0.819784379107259
Merged-chr4-122836252-4	chr4	122835752	122836752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	25.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	6.82966768191954	7.0718669919536	6.74980563331362	7.00751243817406	7.06345177817344	6.52864936930902	0.00491813157147697	0.986203953021035	0.997033990984076
Merged-chr8-119426618-4	chr8	119426105	119427105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10557.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.24680031630826	6.45859518413548	6.68899229055504	6.58078342139839	6.56121362839561	5.93360825554499	-0.108832661137536	0.738300643228959	0.934032187674406
Merged-chr11-59540318-4	chr11	59539797	59540797	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.76558232156268	6.61442192633723	6.62840640244873	6.43633621801007	6.58502605707873	6.60414321849029	-0.207119371489084	0.425919949697331	0.793463399937346
Merged-chr3-95627282-2	chr3	95626782	95627782	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	B1F1|SINE|Alu	2302.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.3100338087109	3.46546943325069	3.54577325316051	3.5437977960355	3.5903847446487	3.9536410785561	0.924018401860041	0.116559685210567	0.455830158716025
Merged-chr9-62936141-3	chr9	62935732	62936732	+	720.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	RSINE1|SINE|B4	44647.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.77486083988441	5.74882478517145	5.16416289995693	5.95160545735532	5.8369020320714	5.41072263402409	0.284908263155301	0.45244701096583	0.809443364619324
Merged-chr17-70848425-4	chr17	70847967	70848967	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	1323.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.82339376939468	7.89986273863565	7.75258771890883	7.72674713204282	8.13010601059936	8.0584790869753	0.222963208393163	0.338600268183594	0.728543936569625
Merged-chr19-53422514-3	chr19	53422027	53423027	+	788.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31893.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	2.97455763027357	2.80854582833415	2.92092050659034	2.74070630198957	2.75442711041865	2.93404744322856	-0.475646772591934	0.503697335048006	0.837146033423024
Merged-chr13-52079414-4	chr13	52078909	52079909	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17332.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.3978533086951	6.41189911937925	6.50075555809446	6.35808329259019	6.27117116516416	6.30057877691826	-0.204893029661231	0.443179353644514	0.803662801744639
Merged-chr10-68238944-4	chr10	68238433	68239433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39793.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.33056997734941	7.33861091054336	7.43273723961412	7.68504735152618	7.92341184382287	7.31113978809518	0.451715059784745	0.0804813061905891	0.375478544798365
Merged-chr5-92091851-3	chr5	92091353	92092353	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-8109.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	3.40019423206397	3.76144110370427	3.93627494348649	3.75097647626009	3.62885000242647	4.04852775325516	0.328883912048208	0.57517720639856	0.87094931637326
Merged-chr7-47005372-2	chr7	47004872	47005872	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 1 of 5)	ORR1D1|LTR|ERVL-MaLR	3042.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	2.75476112154161	2.7162830514132	2.91968213701368	3.07393558803268	2.98953592506627	2.67239475894131	0.648642160450622	0.384306373972587	0.765429896007636
Merged-chr17-31067245-4	chr17	31066721	31067721	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	9527.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.75061231301956	6.5188893557293	6.38003232188962	6.01010244086992	6.30189132866461	5.79047718332072	-0.81829366105691	0.00900658599747281	0.0936779944483628
Merged-chr10-85354535-3	chr10	85354042	85355042	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32272.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.87535781620363	4.15989663031303	4.39243384809958	5.61506519383755	5.85046834984802	5.57479282865484	3.68544925440852	1.36688119414737e-15	4.19688008865736e-13
Merged-chr9-121636397-4	chr9	121635881	121636881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5212.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	3.59285911109527	3.85422877183347	3.59189460131034	3.60089537294587	3.52977956530463	4.0514639208468	0.164107448145194	0.779352896709054	0.945711683209622
Merged-chr2-35732713-3	chr2	35732197	35733197	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35965.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	6.39779705858791	6.44137737150689	6.42192269216899	6.55918125810122	6.29371445980142	6.49941562157327	0.0473399451988156	0.861219916802961	0.967789299492425
Merged-chr14-21852121-4	chr14	21851425	21852425	+	882.2083130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-3015.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	2.68340539266407	2.57971583679381	2.79527736451936	2.70195401537399	2.58776802344807	2.49047061470615	-0.490499873747603	0.526802378855215	1
Merged-chr2-109918760-3	chr2	109918262	109919262	+	647.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	1115.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	2.77776078786754	2.55476903767875	2.68195242627442	2.4581138990323	2.38859505723374	2.5676961841517	-1.24285602585073	0.122118543257313	1
Merged-chr5-103746935-4	chr5	103746439	103747439	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7223.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.9619279738783	3.72627791780574	3.83003719400675	3.90563386587465	3.94092635830187	3.89988577953382	0.228574514974468	0.656032379560108	0.904520810952906
Merged-chr6-47561745-2	chr6	47561245	47562245	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	33285.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	4.30722616845443	4.3923618891707	4.10101897358451	4.14577553951595	3.9668725369278	4.21765831698847	-0.484897020620635	0.311467951800749	0.706502339869604
Merged-chr6-57707431-3	chr6	57706927	57707927	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	MLT1F1|LTR|ERVL-MaLR	4972.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	5.60917659851808	5.68402577752169	5.59368261797544	5.66846676817874	5.9144993989596	5.44695015343286	0.138027484791162	0.678346698615637	0.913379518157547
Merged-chr2-132843582-2	chr2	132843082	132844082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025676, exon 18 of 18)	3' UTR (NM_025676, exon 18 of 18)	-3084.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	4.45140265224287	4.53622259759411	4.49375419127422	5.45598765440817	5.93491452462619	5.46098542123917	2.46268070013538	9.73062135601779e-10	1.07811656696608e-07
Merged-chr11-31734305-4	chr11	31733775	31734775	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62413.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	4.88411800868348	4.76742033431024	4.64978118764886	5.17577225166334	4.99973542991362	4.43945302749259	0.318895335026583	0.472147956330952	0.8205191831757
Merged-chr18-75006788-2	chr18	75006289	75007289	+	682.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358306, intron 1 of 2)	B1F|SINE|Alu	950.0	NM_001001181	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	4.06059073762935	4.3279021136747	4.18049953269119	4.18686318482017	4.82673430805652	4.2504894350332	0.710109899682309	0.161009898894566	0.533682780680334
Merged-chr7-126897520-4	chr7	126897006	126898006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 1 of 5)	intron (NM_026827, intron 1 of 5)	772.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	7.77670229736229	7.94580178834275	7.91739529850815	7.95268021414632	8.49543850953848	8.09187565688259	0.462670368344561	0.0610168550910818	0.320078834851767
Merged-chr12-26465769-4	chr12	26465264	26466264	+	863.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3451.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	3.86871237104361	3.70273294148368	3.99479988779566	3.84650257434721	3.86497614281664	3.76814593069317	-0.0751900841016644	0.885793616384872	0.973636976161493
Merged-chr16-92716161-2	chr16	92715661	92716661	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18832.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.25925889806907	4.23754067747726	4.09965681932716	3.52500423250876	3.65771029711109	4.12240015907901	-1.28210267555265	0.0211208313573143	0.167435989919817
Merged-chr16-33668467-4	chr16	33668001	33669001	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15965.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.51709910995302	4.72459184182424	4.77952404121055	4.64949227074205	4.79924032215454	5.14513535242578	0.451317001926915	0.283465697447407	0.681376161050487
Merged-chr10-95279040-3	chr10	95278539	95279539	+	943.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	MTD|LTR|ERVL-MaLR	44670.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.12605796390318	6.25051505846116	6.46872298929403	6.29454925557861	6.42027830659915	6.45792691574686	0.184093549727129	0.512702928627307	0.842083317214953
Merged-chr7-28982687-1	chr7	28982187	28983187	+	602.0	f0_c57.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-167.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	6.39234430752068	6.7210043170438	6.29900720298788	6.11014740296593	6.2164690809233	5.92770992926106	-0.649184593231097	0.0306049298653848	0.211558942778361
Merged-chr11-17211559-4	chr11	17211063	17212063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178909)	promoter-TSS (NM_178909)	26.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	6.86897166201862	6.98724612861404	6.82795560724195	6.6094091300712	6.67054346131346	6.63369903180374	-0.407278337574054	0.103044198383613	0.427977521169197
Merged-chr17-5626511-4	chr17	5626010	5627010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	133910.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.71981414401988	6.49223522539299	6.18746091853439	6.31742939877808	6.29321130218632	5.7953322238425	-0.532904253665293	0.10103075701857	0.423910404417387
Merged-chr5-21711686-4	chr5	21711191	21712191	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10069.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	4.13288729166209	4.4189134383624	4.55174797286208	4.50998833554628	4.56424771969216	5.00292015358153	0.807446709290708	0.0818913604205276	0.378577494186969
Merged-chr4-132310062-4	chr4	132309563	132310563	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_034046)	promoter-TSS (NR_034046)	110.0	NR_034050	100217418.0	Mm.258912	NR_034050	ENSMUSG00000064604	Snora44	MBI-64	small nucleolar RNA, H/ACA box 44	snoRNA	4.99901993398904	4.92801606679532	4.99589891987235	5.19639496490749	5.24896445573092	5.0611093137932	0.432088143117675	0.233429436422838	0.629825757834933
Merged-chr7-99535652-4	chr7	99535128	99536128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177231, exon 1 of 16)	5' UTR (NM_177231, exon 1 of 16)	142.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	7.26883082065202	7.16011207276112	7.16200190894349	6.93167892678019	6.83854941279426	6.8872245571625	-0.478498280863986	0.0441228802278739	0.264311690072695
Merged-chr6-97360181-3	chr6	97359687	97360687	+	717.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	99099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.14925782221397	3.52808885384164	3.6870447541512	3.52887612701837	3.63476632131673	3.75608787008736	0.608329772351344	0.325695412222262	0.71817845131019
Merged-chr13-51315722-4	chr13	51315229	51316229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92889.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.62665001042586	5.78233819833665	5.29438017495188	5.50135386478385	5.45232491941432	5.25653071291015	-0.346380656244823	0.325033003444708	0.717930571240101
Merged-chr10-20719400-4	chr10	20718897	20719897	+	760.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	5681.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.84757177344405	4.00178698334334	3.83838844545127	4.02853348580078	3.90538949400925	4.14923075538462	0.368807587269487	0.465471146406866	0.817020164214671
Merged-chr11-86690477-2	chr11	86689977	86690977	+	732.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175004, exon 3 of 3)	3' UTR (NM_175004, exon 3 of 3)	6396.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	3.26934640355903	3.35014723257893	4.06246127971957	3.58593314639009	3.38837183304515	3.77999620982636	-0.0549156032470134	0.934068209401073	0.985705936387336
Merged-chr1-138322855-4	chr1	138322369	138323369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49131.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	7.57399794366725	7.78402028632871	7.44193405765029	7.51957908528322	7.85216352481453	7.57074841033771	0.07030663077366	0.774452661351062	0.944477929413368
Merged-chr10-44267327-2	chr10	44266827	44267827	+	748.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1012.0	NM_001314013	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	3.50822387933471	3.28693255908773	3.54163390735939	3.31761222594909	3.38751670332402	3.50680382170263	-0.164956679729526	0.782162630560494	0.946471040584
Merged-chr8-83697539-4	chr8	83697034	83698034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	1645.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	6.44465760479396	6.11322156996164	6.6423286916399	6.60202542571568	6.7889606169951	6.53472628217877	0.392552821530023	0.178864385806401	0.560177193729651
Merged-chr2-152115597-4	chr2	152115096	152116096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10072.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	3.06607957750987	3.12399126279745	3.16943337646865	3.18441915250915	3.05682743926855	2.93906759675397	-0.229417363364711	0.728569244066517	0.930478966998914
Merged-chr10-37222842-3	chr10	37222360	37223360	+	838.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83934.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.10317656154598	3.87566150563022	3.84014926156645	3.89509943652687	4.1528338341423	3.91088125873531	0.149932150792241	0.771482308505985	0.943614978016208
Merged-chr15-81694147-4	chr15	81693655	81694655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164320, exon 3 of 6)	exon (NM_001164320, exon 3 of 6)	3132.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	3.63205746726116	3.56262406467748	3.41327696042091	3.57836825111026	3.30591541976446	3.30867377782528	-0.522811583705767	0.384912825529574	0.766069326125737
Merged-chr8-14822968-2	chr8	14822468	14823468	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65568.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.8472972459053	2.842628457281	3.05837570580597	3.1331262881249	3.17975841904661	3.07200408505021	1.01836741420276	0.132751362239489	0.487573398773929
Merged-chr8-109040333-2	chr8	109039833	109040833	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34889.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	3.39120338665894	3.32310079590504	2.9858843963958	3.07504923672862	2.89823695934594	3.29949116948944	-0.656329623291424	0.349195015209699	0.737209301320654
Merged-chr4-138001904-2	chr4	138001395	138002395	+	712.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	4070.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.46668946897924	3.31659410957675	3.59899524519074	3.69167521645258	3.27995252433564	4.04118262701037	0.828136712620297	0.193003440414517	0.580139811791457
Merged-chr5-148554893-4	chr5	148554378	148555378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.09895465594698	5.31092288375777	5.26553537197339	5.75645786312398	5.89552496992475	5.65888388950562	1.0550233369286	0.00152409836790052	0.024998457913713
Merged-chr16-38451860-5	chr16	38451258	38452258	+	737.08667	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007414, intron 1 of 3)	intron (NM_007414, intron 1 of 3)	931.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	3.96858414719401	3.65307009533469	3.72834643656073	3.97774704630039	3.89428525258251	4.09590351282344	0.597513047571414	0.257120684472798	0.654446114025651
Merged-chr11-87591982-4	chr11	87591461	87592461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-205.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	7.49201117503995	7.50790154619199	7.2744866966629	7.36384089908357	7.66812974220597	7.44292125082555	0.101817327369834	0.672050220583396	0.910719060610024
Merged-chr4-3066290-2	chr4	3065790	3066790	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105793.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	2.37430222314465	2.58682435953764	2.56274294289906	2.28026456258716	2.1273075276376	2.63650968582201	-0.912934219707527	0.321920403043662	1
Merged-chr2-80316166-1	chr2	80315666	80316666	+	981.0	f1_c57bl6.idr	intron (NM_024181, intron 1 of 22)	intron (NM_024181, intron 1 of 22)	700.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	5.67664705008565	5.39145910755051	5.68691451724922	5.35743799815767	5.13150639115005	5.32828579272236	-0.618380829047127	0.0745106478716438	0.359191984230562
Merged-chr13-30834557-3	chr13	30834063	30835063	+	793.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 23 of 27)	intron (NM_025588, intron 23 of 27)	85330.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.37287539318454	5.36398109979896	4.98272516036322	5.07926625942099	4.6837488414783	4.81378674928919	-0.837451713728609	0.0346738898216206	0.228273203914661
Merged-chr12-69333697-4	chr12	69333179	69334179	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 16 of 32)	B3|SINE|B2	23497.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	4.30540670822981	4.44563679631017	4.40950752575464	4.497413148197	4.87279113273215	4.52119504673484	0.657385318350041	0.135884628465762	0.49270908860812
Merged-chr4-99061691-3	chr4	99061176	99062176	+	753.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 11 of 47)	intron (NM_026082, intron 11 of 47)	30722.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	3.89070407657251	3.553524387397	3.90504751846635	4.05804350443259	3.94619253616647	4.11511447737202	0.7702483105427	0.144862305176007	0.507759496570419
Merged-chr1-55594150-3	chr1	55593657	55594657	+	865.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	188211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.99376836375639	2.7469652775075	3.24728855168165	2.92248816857546	2.44828673953664	3.10340265571973	-0.62499015246912	0.670546491438562	0.910029724839259
Merged-chr10-37320687-2	chr10	37320187	37321187	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181761.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.41013780001632	6.02272307586354	5.7912636486244	6.66371062279527	6.51268315433665	6.42671746713459	0.699964674310784	0.0259717663607303	0.191108837579028
Merged-chr5-120503621-4	chr5	120503135	120504135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-12.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	7.00227030001295	7.42144941128586	6.94175314581712	7.45054344317853	7.21395029381253	6.84785343181276	0.0805978805818068	0.782597142565453	0.946611374141765
Merged-chr7-25659168-4	chr7	25658683	25659683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138586)	promoter-TSS (NM_138586)	30.0	NR_104358	27998.0	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	7.15820106728464	7.12579776496419	7.17852155680163	7.48663502880425	7.35766026300204	6.81371712276709	0.161855626454058	0.556534576513483	0.863603167403937
Merged-chr14-73236292-2	chr14	73235792	73236792	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-1599.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	1.97668569106284	2.03936897945893	2.13705011801075	1.87919052695411	1.88282659334241	1.80932230653066	-1.6806987483272	0.0989805025809576	1
Merged-chr12-25092695-8	chr12	25092206	25093206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3386.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	5.96990953382426	5.64505467117519	5.33991957670401	5.08762585992563	5.10015560200955	5.20349225713836	-1.09389569150576	0.00285967112042135	0.0405707612255788
Merged-chr5-43914348-2	chr5	43913848	43914848	+	591.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45539.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	2.65755161829039	2.61859519731218	2.98948719354963	2.73570972464413	2.63093585085726	2.77131269117417	-0.251275799497327	0.739220392567336	0.934189741955566
Merged-chr9-108517308-7	chr9	108516824	108517824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 1 of 9)	CpG	237.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	8.48978581209931	8.43685241967112	8.34058709668782	8.28304310847115	8.26165846840029	8.36072441455718	-0.175886837418661	0.384859689487288	0.765981894009575
Merged-chr4-123718276-4	chr4	123717794	123718794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002445).2	promoter-TSS (NR_002445).2	-108.0	NM_001030274	595136.0	Mm.42805	NM_001030274	ENSMUSG00000028648	Ndufs5	AI256693	NADH dehydrogenase (ubiquinone) Fe-S protein 5	protein-coding	6.21390032139807	6.54796913123345	6.76094050360956	6.60174324369271	6.7635870821311	6.23326286123252	0.0683621403917033	0.826405387452971	0.959132530412348
Merged-chr4-8844220-2	chr4	8843720	8844720	+	802.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	92896.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.06310355060603	3.24526553871463	3.55006809993321	3.436580692056	3.45272355073772	3.46398608093303	0.611444278874328	0.333127324244763	0.724049727426025
Merged-chr2-165900265-3	chr2	165899739	165900739	+	740.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-15401.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.30416841123249	5.28292291502824	5.62987550581182	5.85497624698172	5.83110806282615	5.7944137826715	0.797295874603653	0.0144351411879378	0.129314401666036
Merged-chr15-79028436-4	chr15	79027927	79028927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008197, exon 1 of 1)	5' UTR (NM_008197, exon 1 of 1)	215.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	6.1513234459901	5.92587070444012	6.17058046391017	6.00763102507493	5.83948664736315	6.08413937420801	-0.190115944181196	0.525030435044599	0.848874487604023
Merged-chr19-11344374-2	chr19	11343874	11344874	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8228.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	2.77018821206858	2.66088078906284	2.42787902672518	2.68145276999722	2.4591044368015	3.00350819687486	0.554536261034485	0.515962752746556	0.844009450734964
Merged-chr12-36363827-3	chr12	36363322	36364322	+	771.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17628.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	3.5584280397661	3.58572054288179	3.59548729581541	4.14279735625895	3.90039418131033	3.9324589484171	1.36616269979434	0.0108913333708736	0.106705059122059
Merged-chr16-91485086-4	chr16	91484585	91485585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-130.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	7.38827692940996	7.26937733280244	7.12157129524033	7.21738387567462	7.47561802643902	7.14060186347242	0.0373411500807919	0.880818214943539	0.972620786559158
Merged-chr1-58713200-4	chr1	58712688	58713688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-98.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.38644208826343	7.52424367099046	7.470022578604	7.52999461291203	7.75036678312002	7.47541245309773	0.198904325194199	0.390164636164366	0.769518914518539
Merged-chr11-50214285-2	chr11	50213785	50214785	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3465.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	6.13748853974316	6.0039219622322	5.32045424953659	5.30249803470665	5.26267848186995	5.20898311077335	-1.16262789059761	0.00209366578928754	0.0319885683061031
Merged-chr4-128711605-4	chr4	128711090	128712090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 6 of 14)	intron (NM_018774, intron 6 of 14)	-15981.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.24012615932755	3.07503094553714	3.1765589562327	3.35454949832986	3.16018572737579	3.00314067329344	0.0790241265356306	0.904364979132039	0.978131323042371
Merged-chr6-31175905-2	chr6	31175405	31176405	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	42569.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.55822308776843	6.45328639934829	6.21478767759469	6.22789482687618	6.40819419485266	6.31658469133621	-0.168591079019782	0.548559396583295	0.859822368814807
Merged-chr2-79635238-4	chr2	79634746	79635746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-179.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	8.02401223974214	8.17035949231953	7.89764051851875	7.90296914650445	7.92236856068732	7.73398196736561	-0.257079048845297	0.246700814294355	0.643782025373544
Merged-chr16-91372948-8	chr16	91372474	91373474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110498, exon 1 of 7)	5' UTR (NM_001110498, exon 1 of 7)	191.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.4821530458279	8.45962990142991	8.48246953802758	8.43693991210833	8.47943273027727	8.24837879651448	-0.108417135252871	0.596744306112957	0.880046639147099
Merged-chr1-121462107-4	chr1	121461609	121462609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 9 of 23)	intron (NM_029955, intron 9 of 23)	31042.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	5.56468875381203	5.22803370054766	4.97250519944075	5.88368046488543	5.75604080910061	5.74961903197486	0.948620483726099	0.00894130412367484	0.0931265532009934
Merged-chr17-24584683-1	chr17	24584183	24585183	+	839.0	f0_balb.idr	intron (NM_013630, intron 26 of 45)	Tigger6a|DNA|TcMar-Tigger	34733.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	4.47443469884043	4.48429800880229	4.60290485402767	4.64053061851745	4.60818712912469	4.85539294107269	0.436246942162639	0.294236495068124	0.690922259958473
Merged-chr8-94666665-4	chr8	94666172	94667172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024191)	promoter-TSS (NM_024191)	72.0	NM_024191	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	5.28427149668227	5.07810436025466	4.49627788213493	4.82081198774301	4.64602954526207	4.41947795926961	-0.806160653751013	0.0828719754582547	0.380867789777987
Merged-chr15-58272649-4	chr15	58272127	58273127	+	901.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51542.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	4.16798930749243	4.0660902041091	4.38761233498984	4.51802901098311	4.035823531683	4.49472754571361	0.411330096201119	0.403650450459028	0.778948248020816
Merged-chr3-144580185-6	chr3	144579694	144580694	+	842.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	B1F1|SINE|Alu	9767.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.82234046678289	5.97942176492491	5.95859360876042	6.17605051594035	6.22441804977499	5.76648290812428	0.285756150877972	0.359362059980099	0.74555060929075
Merged-chr6-98993414-4	chr6	98992922	98993922	+	980.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	34876.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.92560614827626	3.70534196355461	3.49610861217899	3.66013699259548	3.21632672642982	3.45217707025073	-0.967514565255301	0.119259321038385	0.461700534358253
Merged-chr9-45180900-2	chr9	45180352	45181352	+	605.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-14914.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	4.67820401369404	4.88187481451274	5.39118914398572	4.76979027709126	5.01568641454094	5.14398508853758	-0.0563248101485048	0.896591686889922	0.975838835430135
Merged-chr9-58583366-6	chr9	58582863	58583863	+	782.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	1123.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	6.46091002007551	6.46472197744225	6.51965145701619	6.74900054273588	6.9555025515483	6.63106778581365	0.499905062719881	0.057731249257752	0.310466082031831
Merged-chr6-125008950-4	chr6	125008480	125009480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175557)	promoter-TSS (NM_175557)	-258.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	8.20381683631648	7.53019475854198	7.88263082482234	8.06286366205164	7.64333364860833	7.74747433957201	-0.104609784594867	0.705748069225635	0.922834459892351
Merged-chr2-120580520-2	chr2	120580020	120581020	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	12849.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	3.93023286096599	3.87367283911595	3.91725555451865	3.81564771382737	3.68158975874912	3.56056826266704	-0.690666059591739	0.196039581024727	0.58384154409296
Merged-chr3-69669353-1	chr3	69668853	69669853	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-52702.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	6.28536007930496	6.21307366961746	6.45329352229274	6.4065517115051	6.86540212277607	6.58229349093794	0.527627603528812	0.0666208606067294	0.337271146834068
Merged-chr19-9933922-2	chr19	9933422	9934422	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34389.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	2.60473854249213	2.92436393013013	2.85311237582303	2.71425589394129	2.53115810353264	2.61810720732345	-1.00233970072617	0.197286497076266	0.585275771845478
Merged-chr14-73507826-4	chr14	73507363	73508363	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2186.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	4.25213327078008	4.30077865236275	4.13100007691554	4.17357454883416	4.19417804674763	4.33610537756363	-0.0104677335872155	0.981889081062757	0.995856055595006
Merged-chr9-62980888-4	chr9	62980323	62981323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019663)	promoter-TSS (NM_019663)	56.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	7.65983746818449	7.62162606849145	7.41149544121722	7.58555670446046	7.4309076022083	7.48944451193975	-0.105920229554415	0.643888763466704	0.899990653857957
Merged-chr11-21369715-3	chr11	21369209	21370209	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	920.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	5.34716636262808	5.48155823610898	5.31022618406061	4.97564873814998	5.01149665208792	4.88425225708511	-0.869683349565772	0.0154978927170313	0.135741963915657
Merged-chr7-82811752-4	chr7	82811260	82812260	+	951.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-55573.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	4.90868160341717	4.91520847480445	4.79585999935032	5.76602216118504	5.67706868804344	5.24678795941146	1.43803165216967	0.000118780407553918	0.00328245770566138
Merged-chr10-128092550-7	chr10	128092058	128093058	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054078)	promoter-TSS (NM_054078)	-225.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.91056417924029	6.8437023978775	6.85974914038434	7.15661058299795	7.25985943076093	7.2319926700784	0.524586088935271	0.0263932899208762	0.192947888572858
Merged-chr4-143288631-3	chr4	143288149	143289149	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010329, intron 1 of 5)	intron (NM_010329, intron 1 of 5)	10915.0	NM_010329	14726.0	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	2.90847579695402	2.60333249676337	2.98736589373402	2.57341046715032	2.30757552001044	2.94729767695354	-0.902952108902422	0.542157022754693	0.857034750433211
Merged-chr5-30155142-4	chr5	30154637	30155637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178878)	promoter-TSS (NM_178878)	-116.0	NM_145558	231086.0	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	7.7626885429575	7.66969315466984	7.61986254059175	7.70356678623024	7.67280768144893	7.66722682165527	-0.00950513306661394	0.964967252191674	0.991712305720627
Merged-chr11-69047337-2	chr11	69046837	69047837	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011496, intron 1 of 7)	intron (NM_011496, intron 1 of 7)	1700.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	2.48778398127526	2.37955810295529	2.59301136048508	2.35847970179287	2.06405148979333	2.48135531165484	-1.14975930108162	0.22279107057837	1
Merged-chr5-31180022-4	chr5	31179488	31180488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027901, exon 1 of 19)	5' UTR (NM_027901, exon 1 of 19)	156.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	7.63690333110815	7.83771227278045	7.81928380099652	7.60127220093118	7.86571313232321	7.85153444164591	0.0178793579737448	0.937598865125283	0.986057836872162
Merged-chr10-5807723-3	chr10	5807217	5808217	+	825.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2252.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	4.87037075554919	4.89865674554609	4.57315402801228	4.75549495191289	4.64823954894726	4.84199949130337	-0.126583062570445	0.75583611744358	0.939451962958331
Merged-chr7-15920596-2	chr7	15920139	15921139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	1732.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	2.45884897592817	2.52090586281734	2.58553508676527	2.56771689931436	2.38454832111804	2.65898433380107	0.0945835520579639	0.904798299345005	1
Merged-chr5-137705457-2	chr5	137704957	137705957	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-20704.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	3.38339941559775	3.53765214667164	3.56766956944077	3.55163676594308	3.4792816016716	3.6375791543553	0.207144363095193	0.716381180937672	0.926569584146506
Merged-chr9-101076198-2	chr9	101075698	101076698	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1436.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	6.92697764014362	7.0990192938562	6.73865805592479	7.03262307558779	7.06183204831054	6.9634349728433	0.127215099676732	0.614753727082535	0.887600696218698
Merged-chr9-64242504-4	chr9	64242008	64243008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	MTC|LTR|ERVL-MaLR	7307.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	4.48637546856802	4.60228491343947	4.90738930383944	4.89817610127123	4.70743224269167	5.19392491481902	0.615112274017599	0.150480139687276	0.517334494681425
Merged-chr10-117277958-4	chr10	117277452	117278452	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017372, exon 4 of 4)	3' UTR (NM_017372, exon 4 of 4)	4320.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	5.43935103785201	5.32377477968751	5.2178525211659	5.03530134162368	5.21743269150517	5.4635893933051	-0.186502161408387	0.605339716225656	0.88352351689788
Merged-chr2-90522107-4	chr2	90521596	90522596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-42922.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.58384858644493	6.33259211088977	6.35365596604082	6.35332802214914	6.37958753276399	6.16489374974391	-0.199568565357577	0.475963698778073	0.822256564889981
Merged-chr13-95949566-4	chr13	95949084	95950084	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-57662.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.47104142234354	5.18018131101536	5.43439632394643	5.53220397119796	5.711213967842	5.7415667980597	0.570500765149235	0.0896223225521956	0.397786003889854
Merged-chr13-3611167-4	chr13	3610660	3611660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134063)	promoter-TSS (NM_134063)	-52.0	NM_001360838	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	7.7162645258789	7.61045990154702	7.7342571518158	7.75833345523176	7.68299406250741	7.74778479823627	0.0614777305708136	0.775937472797638	0.944804182096302
Merged-chr8-70673670-4	chr8	70673166	70674166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	CpG	435.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	8.37987231164309	8.58420570386273	8.29080286570503	8.46226773978407	8.65641312882522	8.12381372349661	0.0179155474137677	0.940826458996074	0.986888338850358
Merged-chr1-155901511-4	chr1	155901018	155902018	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039184, exon 24 of 38)	exon (NM_001039184, exon 24 of 38)	71737.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	5.02902532407155	5.07406803834543	5.09962134537587	6.24667770716089	6.30469995792608	5.98700893125196	2.10325706631851	1.28887493050695e-10	1.68623750342173e-08
Merged-chr12-112517161-4	chr12	112516648	112517648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5988.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	4.13689516819283	4.45831300210171	4.40010238334001	4.18520819736598	4.47060026154316	4.14940411692272	-0.134638811560565	0.778218641748478	0.945438331205668
Merged-chr1-74332487-4	chr1	74331992	74332992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019999)	promoter-TSS (NM_019999)	-118.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	3.99162861380173	3.72885675260021	3.51262950084635	3.8296802617369	3.39133371598668	3.58608373660419	-0.507205786357418	0.398621927326843	0.775273667788888
Merged-chr2-160237548-3	chr2	160237041	160238041	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89953.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.75151838314397	6.75298041196839	6.80209755531575	6.70578183787506	6.89628188254176	6.73781446803188	0.0328607760804215	0.895833731253424	0.975665889379756
Merged-chr17-29671206-4	chr17	29670694	29671694	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028791, intron 2 of 23)	MTD-int|LTR|ERVL-MaLR	10599.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	3.34497777613913	3.52714665498223	3.431287540478	3.07028344338667	3.11068660503536	3.60386963019803	-0.625852769060317	0.343529868782228	0.732367959280244
Merged-chr3-85571467-4	chr3	85570979	85571979	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2650.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	2.85256856399251	3.06934675817605	3.11244702991022	3.22640314254507	2.86509766755955	3.40184053162533	0.710603086365129	0.316605328984896	0.710660560944371
Merged-chr18-54981214-2	chr18	54980714	54981714	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	8966.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.78501198831031	3.83131271172649	3.84405444628653	3.72700176545752	3.67815918790673	4.09771856785166	0.0554951278585314	0.917758398241867	0.981729884566751
Merged-chr16-55732867-2	chr16	55732367	55733367	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	89271.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.05940280670872	4.25638735188333	4.08308810861237	3.79007868056978	4.01899936283367	3.95761191011421	-0.626109133483668	0.211825534499603	0.604236512672024
Merged-chr8-120665348-2	chr8	120664848	120665848	+	637.924988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	2764.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	4.88338343142244	4.9680339581699	5.08091041483393	4.52575998720248	4.53353528386836	4.91141267050179	-0.728874575470444	0.0745296365514326	0.359236504994783
Merged-chr1-84321593-4	chr1	84321100	84322100	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-36955.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.33640849056657	4.80092531768602	5.16006836471359	4.52543063808006	4.58928734571649	4.52699095968009	-0.58906595261306	0.209601807447015	0.601253049058891
Merged-chr10-8866324-5	chr10	8865794	8866794	+	763.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	19776.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.64522627875648	4.4964515763895	4.98173421213841	4.55216244557171	4.35021890113054	4.58058146421172	-0.534651578674949	0.225876004001173	0.620790596836024
Merged-chr7-88276452-2	chr7	88275952	88276952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.69380884035307	5.87352125562976	5.73188016377867	5.86741348293759	5.90364383943697	6.20076243416819	0.385969361064593	0.215101385444203	0.608433757360944
Merged-chr14-120762973-4	chr14	120762481	120763481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-148213.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	6.60729769939266	7.05957105129298	6.54355028336662	6.25727740632149	6.70585404399725	5.68035167604126	-0.740938571422839	0.0501040063840695	0.285024554809985
Merged-chr15-89077245-2	chr15	89076745	89077745	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026485, intron 1 of 9)	MLT1A|LTR|ERVL-MaLR	1181.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	5.2468757487957	5.57045586800292	5.19047598964629	5.46963386192323	5.45118365731454	5.59123134984265	0.27669324968146	0.428852355617963	0.795557738579824
Merged-chr4-103197535-1	chr4	103197035	103198035	+	1000.0	f0_balb.idr	intron (NM_001356276, intron 8 of 11)	intron (NM_001356276, intron 8 of 11)	17641.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	3.7729673736875	3.45031375115077	3.65257024466763	3.37789258424954	3.50678805969502	3.27230984459302	-0.859148596364162	0.157514185401613	0.528875531587073
Merged-chr11-115474676-2	chr11	115474176	115475176	+	641.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-991.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	4.75676315771268	4.54987943982913	5.03045466498459	4.9872016210761	4.86055889417216	4.84983315400884	0.269907323763518	0.50772432981461	0.83937183536777
Merged-chr12-84614201-4	chr12	84613724	84614724	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	3242.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	6.66508284764816	6.80332526948311	6.54377841629121	6.36193804672995	6.44391288239789	6.04423159365717	-0.60022151034202	0.0352489484310559	0.230454506250593
Merged-chr5-105599023-4	chr5	105598514	105599514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	79543.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.29674472884431	7.23461747373789	6.95478824874198	6.84345497743367	6.67619987214709	6.50553466910181	-0.751259279676529	0.00447571919190441	0.0566583968537931
Merged-chr1-143985263-4	chr1	143984778	143985778	+	863.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18871.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.03845673202928	5.98580721023879	6.23763188747407	6.17560465980971	5.99054188032077	6.39038419633251	0.170765712622144	0.570203523953246	0.869072933274727
Merged-chr6-116001861-2	chr6	116001361	116002361	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6856.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.57744067816302	3.21320242881453	3.53759006663033	3.55959788223919	3.59128495175567	3.44319729602282	0.313688435872622	0.602105198962885	0.882226875541274
Merged-chr3-145729769-4	chr3	145729294	145730294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28898.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	3.07513784942988	2.87666254093774	3.05461017170396	3.11392791635048	2.60784729569892	2.94839112263179	-0.457748116726036	0.545173940760019	0.858039518475441
Merged-chr14-20836773-4	chr14	20836279	20837279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008873, intron 1 of 10)	intron (NM_008873, intron 1 of 10)	117.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	7.09329495378139	7.00777491662857	6.92887686906022	7.13114099071887	7.20475549160472	6.83778312299009	0.0945066590639685	0.708810981959161	0.923765689109074
Merged-chr8-72492790-4	chr8	72492302	72493302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-188.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	7.12118044005134	7.23168277971277	6.98551260189462	7.43408027791419	7.32786738700677	6.79976753293967	0.157714905078009	0.568134145607694	0.868528648409077
Merged-chr7-92886391-4	chr7	92885875	92886875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	11122.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.55087811067963	6.70347290970914	6.19050657017973	6.68557023023357	6.5097262256072	6.41835596894837	0.0534117121624379	0.854403157824632	0.965987623019113
Merged-chr4-94477163-4	chr4	94476677	94477677	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	79619.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	4.06624004307608	4.09648717537756	4.15031282441552	4.76743176378103	4.90681843557891	4.50357362944723	1.66416931407279	0.000228026092983746	0.00557063862154773
Merged-chr5-64537492-3	chr5	64536905	64537905	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60397.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	3.75290654196653	3.65880360635466	3.77615992436023	3.57784163703774	3.55442455960828	3.69351021979599	-0.421849331015484	0.437999100275117	0.8003671068918
Merged-chr1-191950468-4	chr1	191949961	191950961	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26909.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	3.12442383252123	3.5663116399602	3.13531220037734	3.6878746430352	3.24250139386831	3.33451422537333	0.523074578901756	0.441937643217212	0.803021147704186
Merged-chr2-18836623-2	chr2	18836123	18837123	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34805.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	3.93682251183475	3.88422936580054	3.56787504410047	4.27266796980005	4.02724425794959	3.76200895696423	0.688699598885803	0.220632510749945	0.615199565226559
Merged-chr10-4612461-2	chr10	4611961	4612961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	472.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	6.35185711784685	6.65689240250155	6.10913843020355	6.15035877939991	6.09001819726923	5.67145376975929	-0.675540838975531	0.0398596299872428	0.248437460073296
Merged-chr1-53313681-4	chr1	53313178	53314178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104361)	promoter-TSS (NR_104361)	54.0	NR_104360	72085.0	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	7.40647422737842	7.78827673877269	7.38348923187994	7.34461003922415	7.48549480262678	7.1138383672259	-0.314200599335671	0.228090202343016	0.623077135802944
Merged-chr15-73068244-4	chr15	73067766	73068766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7062.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	6.97547293792798	7.29400998427376	7.01058009725595	7.38384414121226	7.89051676535467	7.22656123783897	0.648498788538412	0.0235889192725449	0.180072183011919
Merged-chr2-84387523-4	chr2	84387022	84388022	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	37744.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.95589664200491	6.37304532986288	6.0049823570305	6.59032998648546	6.70633892292306	6.52040854101376	0.781205618134386	0.00786131789427653	0.0849798896435471
Merged-chr2-4569332-1	chr2	4568832	4569832	+	555.0	f0_balb.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	9578.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.41205648265234	5.70212524170041	5.94703492310082	5.86124470383678	6.23405238265861	6.03023244494565	0.641050604671895	0.0550587899580281	0.301512305067531
Merged-chr11-65794535-4	chr11	65794014	65795014	+	952.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6155.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	4.7403100191615	4.60905323544374	4.49179578919352	4.82265224371638	4.57325176355187	5.01560766448361	0.421633339440266	0.321400787228012	0.714837665357421
Merged-chr18-32353310-4	chr18	32352862	32353862	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-23855.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	4.98637590395941	4.7494687134144	4.5359298789732	5.10537328070936	5.58330373358527	5.13255185386533	1.10264411694947	0.00834139241052469	0.0886764507084373
Merged-chr15-89128650-4	chr15	89128158	89129158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028449)	promoter-TSS (NR_028449)	42.0	NR_028448	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	6.53301284833704	6.8004696561067	6.76400097719805	6.49568695862009	6.69381372188152	6.54704005011563	-0.184285430323864	0.489563842494912	0.829747590465569
Merged-chr7-80114765-4	chr7	80114306	80115306	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	544.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	6.36136517279713	6.48790922544614	6.75547274967516	6.4916525194591	6.31525140882583	6.64867628876902	-0.0864073959910627	0.762126692385121	0.941448623346266
Merged-chr9-112180042-3	chr9	112179509	112180509	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177615)	TTS (NM_001177615)	5940.0	NM_001177618	74100.0	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	3.15060621817302	2.95912254572271	3.04965220528105	2.90170155867905	2.6401666821117	2.94406508433572	-1.11786247430963	0.125089061307016	0.473260156105768
Merged-chr4-16013341-4	chr4	16012849	16013849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355616, intron 1 of 5)	intron (NM_001355616, intron 1 of 5)	489.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	6.99596950938531	7.50756785238869	6.76979129331585	6.82819744915534	6.82371120740617	6.64348443180273	-0.563901929100911	0.0589658557179909	0.314313319832325
Merged-chr10-61114370-4	chr10	61113871	61114871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 4 of 14)	intron (NM_009163, intron 4 of 14)	25040.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	5.89109335355465	5.6039947136585	5.77583446056502	5.68093618317225	5.66882977721123	5.90904056846647	-0.021984217006123	0.945041150114153	0.987875414328125
Merged-chr12-3815137-2	chr12	3814637	3815637	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	7977.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.0898180211692	3.68790888640816	4.02137436657525	4.19610871238109	4.26929282254141	4.18511885180409	0.801959157561073	0.112421855907409	0.447857413048485
Merged-chr6-51543967-3	chr6	51543468	51544468	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	-555.0	NM_028035	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.00331631641032	6.13826633754979	6.37771699158925	6.0320284208659	6.12531419433543	6.05815700086417	-0.165973719477361	0.57322385698939	0.869962295500663
Merged-chr16-10988792-2	chr16	10988292	10989292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	4329.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.53774402870923	4.98569661540344	5.32115876815921	4.99875803515658	5.08444845602795	4.97352358904869	0.0953054683020829	0.823859555775173	0.958451755471188
Merged-chr19-5729227-8	chr19	5728644	5729644	+	854.8402710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181452, intron 1 of 1)	intron (NM_181452, intron 1 of 1)	522.0	NM_181452	17826.0	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	5.66217560840326	5.69117147724337	6.31603066301557	5.71135690907639	5.73013991093778	6.07367514611902	-0.127802280537916	0.721636911413538	0.928555409719137
Merged-chr4-71338816-4	chr4	71338326	71339326	+	933.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-803898.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	2.38193636701791	2.58608008087955	2.78915390639387	2.8364983393139	2.65477257405024	2.92096354876847	1.16251081188043	0.150097533528845	0.51688627325901
Merged-chr16-20539829-4	chr16	20539340	20540340	+	818.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 3 of 10)	intron (NM_001302970, intron 3 of 10)	4360.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	4.78963205691716	4.8254195674383	5.12732346099154	4.92991067489622	4.73312879279939	4.9961737472375	-0.0661944101053632	0.867665803876663	0.969418741628431
Merged-chr6-72096959-1	chr6	72096459	72097459	+	855.0	f0_balb.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-649.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	7.35910476626011	7.66748036208542	7.24778349259671	7.61585245802918	8.01164410283714	7.23010859080348	0.33082666939591	0.259861961974888	0.657466424965747
Merged-chr18-23753675-4	chr18	23753172	23754172	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162941)	promoter-TSS (NM_001162941)	-53.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.33073641842444	5.11989384327214	4.36151510308365	5.34072945683608	5.08650027344749	4.68770465478791	0.155523618679199	0.855239556738502	0.966123042475177
Merged-chr13-18794084-2	chr13	18793584	18794584	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 6 of 28)	intron (NM_172120, intron 6 of 28)	76792.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	4.54523551148772	4.74023208672727	4.4853348011508	4.72711252153348	4.36546937420675	4.90021154773776	0.169509050762586	0.703944705060001	0.922296896558746
Merged-chr6-120822826-4	chr6	120822323	120823323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-125.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	8.48911531999886	8.78544274714693	8.4513218118938	8.15621712643643	8.54891803029044	8.17289809752341	-0.382484498124521	0.10989931496828	0.443184138539948
Merged-chr8-56067062-1	chr8	56066562	56067562	+	766.5	f0_balb.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	126237.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	4.11182164963664	4.03189269736894	4.04628959296528	4.17204763002047	3.91794458189603	3.96714742831377	-0.123506994867972	0.801392273093318	0.952943883666292
Merged-chr6-34384255-4	chr6	34383765	34384765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172398)	promoter-TSS (NM_172398)	18.0	NR_149754	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	6.2329770400427	6.72989181401806	6.69288605935808	6.44065177536707	6.48327701605427	6.39261898196772	-0.204281227273887	0.482849852663649	0.825853985496863
Merged-chr2-119167059-3	chr2	119166544	119167544	+	659.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	-744.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	2.51775969520012	2.79439750806376	2.81865729125179	2.48337797062909	2.60773914345596	2.38132766052826	-1.2440811775318	0.141445178367475	1
Merged-chr17-35978237-2	chr17	35977737	35978737	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282025, intron 4 of 4)	intron (NM_001282025, intron 4 of 4)	786.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	3.24573705014778	3.44461706515063	3.24893613050146	3.40702723917595	3.32215770659901	3.32135755191077	0.118309081218858	0.846104979716228	0.963961283421434
Merged-chr18-83829084-1	chr18	83828584	83829584	+	550.0	f1_balb.idr	Intergenic	Intergenic	257478.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.19071742059657	4.33561836927291	4.24925807078588	4.12068466688693	3.95247646968838	4.3595201471259	-0.328449882555239	0.49464322475553	0.832098209532918
Merged-chr1-136582782-3	chr1	136582285	136583285	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-42116.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.5065136703371	5.74073368646597	5.32192462033331	6.11479313165375	6.33693871887943	5.83934518101629	1.02524028753132	0.0025816408528503	0.0375941848239356
Merged-chr17-17373573-2	chr17	17372971	17373971	+	997.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-861.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	5.16030253219419	5.41162748823236	5.4394064134657	5.41128993998325	5.26896539446993	5.11926974635816	-0.12308401622684	0.729491536485423	0.930635866770147
Merged-chr7-118130782-2	chr7	118130282	118131282	+	611.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001031814)	TTS (NM_001031814)	-1157.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	4.71850348374952	4.44514093859919	5.06296855321948	4.74401634574474	5.03273807293625	5.02926485029634	0.421607304635306	0.326979911629087	0.719293040205362
Merged-chr10-13189755-4	chr10	13189250	13190250	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 3 of 10)	intron (NM_181470, intron 3 of 10)	3387.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	5.63377043428669	5.95008267026121	5.57994380704365	5.47837637200176	5.64645388365292	5.80149095075872	-0.177742519372057	0.594543751429479	0.879121363157181
Merged-chr11-51606912-4	chr11	51606413	51607413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010448)	promoter-TSS (NM_010448)	-32.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	8.78355753904381	8.82180039833392	8.5021973712371	8.62994187424475	8.57320663444741	8.34109739442559	-0.262817233998334	0.233558046394914	0.629836294896575
Merged-chr2-118546773-3	chr2	118546296	118547296	+	783.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138313, exon 3 of 5)	exon (NM_138313, exon 3 of 5)	803.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.21105559102888	5.04680577813494	4.83852553879085	5.38012026081382	5.23039158408919	5.09694165016266	0.398755562402728	0.287942998308381	0.685252288160501
Merged-chr14-31388364-3	chr14	31387782	31388782	+	918.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	29395.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.96315859959782	5.88412314979384	6.33624389623778	5.80102985246131	5.75626557552448	5.9545744897576	-0.404751292178423	0.201346430833989	0.590977946905871
Merged-chr9-40415648-1	chr9	40415148	40416148	+	756.0	f1_balb.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-39231.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.3033242433873	3.34190469957738	3.44085773542769	3.67610713728234	3.64020654246049	3.62083549067872	1.06596553471337	0.0631668222449424	0.327231038809436
Merged-chr3-59263823-4	chr3	59263312	59264312	+	812.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	-827.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	6.73255385666822	6.95163912242212	6.89912828467992	7.26338115457707	7.35679616433983	7.21835155591539	0.637116010432638	0.0084290237878072	0.0893568876717876
Merged-chr14-19759939-3	chr14	19759441	19760441	+	680.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 2 of 20)	intron (NM_008695, intron 2 of 20)	8684.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.08914508722523	4.3410395993029	4.6065313055911	4.22810256052212	4.21497325774539	4.12475380400732	-0.431385683086707	0.371140188514027	0.755319007603725
Merged-chr14-20388930-4	chr14	20388419	20389419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134081)	promoter-TSS (NM_134081)	-9.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	5.1140229587696	5.33700819747176	5.12588373862563	5.26264473010068	5.23930708996973	5.3516147415089	0.15994732829401	0.650036882297407	0.902475350617976
Merged-chr17-48247690-4	chr17	48247186	48248186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021407)	promoter-TSS (NM_021407)	-43.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	4.68672528846915	4.13332714006601	4.60757080617954	4.45187204190966	4.16431473202302	4.55619236649671	-0.259147740847572	0.593515815549237	0.878539957258253
Merged-chr5-66021238-1	chr5	66020738	66021738	+	558.0	f1_balb.idr	intron (NM_139065, intron 6 of 6)	intron (NM_139065, intron 6 of 6)	-16953.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	2.60732647495543	2.49800532961274	2.70807290063142	2.68575711706337	2.52154900215636	3.01231079171626	0.781563655596072	0.321773936476111	0.715218854925801
Merged-chr18-23989014-2	chr18	23988514	23989514	+	643.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-620.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	5.23069403235838	5.56900323688504	5.52112304175937	5.27892825287473	5.44839055363417	5.07172178451177	-0.310574600387708	0.393590409591327	0.771765542624605
Merged-chr3-96716020-3	chr3	96715521	96716521	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 9 of 14)	intron (NM_028925, intron 9 of 14)	-7461.0	NM_030094	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	3.45436067898235	3.72079982620234	4.14946897775235	3.45806581892786	3.3590659834059	4.00889291024468	-0.534783910716744	0.410195848146832	0.783116615634315
Merged-chr13-85553312-4	chr13	85552813	85553813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-263827.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.66512970885029	5.54573291496157	5.39826168873214	5.65371723618038	5.79568838681133	5.66747319958831	0.301628102400492	0.349671936895628	0.737704147134326
Merged-chr8-94782868-4	chr8	94782362	94783362	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009142)	TTS (NM_009142)	10682.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	3.36661306428127	3.15267134993785	3.25680373765024	3.89652619096384	3.64560363974556	3.72679310158852	1.86865639171944	0.00222582089830505	0.033510361436128
Merged-chr16-97962739-4	chr16	97962267	97963267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-145.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	8.45259792524043	8.71079135334093	8.14637137936118	8.30160844798097	8.37031305899568	7.96103793614865	-0.327341530977322	0.197683005722451	0.585816672731807
Merged-chr9-57523012-2	chr9	57522512	57523512	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	1780.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.97987819681751	5.97034688906394	6.26917421936236	6.69900237940852	6.72459026791666	6.72714088639485	1.06256553299155	0.000101576235889363	0.00287090877577519
Merged-chr17-57246148-3	chr17	57245629	57246629	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 2 of 16)	Lx8|LINE|L1	1341.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	3.27761930739124	3.46424634267543	3.48708335682308	3.35710381945717	3.38514437776338	3.55701271694413	0.078562108496856	0.894750382466225	0.975576532925631
Merged-chr15-58888141-4	chr15	58887619	58888619	+	933.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	7.03198226008152	7.26134495260709	7.1357864914899	6.86502601604879	7.34289144521733	7.37520755673542	0.101434454517435	0.705467227427947	0.922789993394714
Merged-chr6-83646890-1	chr6	83646390	83647390	+	806.0	f0_balb.idr	exon (NM_016751, exon 5 of 7)	exon (NM_016751, exon 5 of 7)	9226.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.07162728158443	6.45632272911468	6.55077119063618	6.01272306213184	6.04492947593484	6.19203510253904	-0.484692434563661	0.108756660810353	0.440618572047318
Merged-chr8-34143718-2	chr8	34143218	34144218	+	648.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	3021.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	4.00033729670487	3.77292010731231	4.10371799346166	4.28569528393898	4.27054667176632	4.30683772314002	0.941062424862221	0.0525325743992151	0.293167055355907
Merged-chr10-5057089-3	chr10	5056591	5057591	+	701.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 41 of 54)	intron (NM_001079686, intron 41 of 54)	11972.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	2.63224954432878	2.88492618611219	3.02577392330683	2.82430092366654	2.77061504959757	2.92525359542954	-0.0737764869290714	0.919858554086653	0.982120898917633
Merged-chr11-49252241-2	chr11	49251741	49252741	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110148, intron 3 of 3)	PB1D10|SINE|Alu	1689.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	3.79412952623593	3.82522636462239	4.18667509725234	3.67014317256241	3.89967781971592	4.16900749500565	-0.0496951713940302	0.92764095126942	0.983626621893489
Merged-chr10-80388828-2	chr10	80388328	80389328	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1177.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	3.78728231785925	3.804106927228	4.14627071189402	4.05531340657012	4.05016321376094	4.4573909295404	0.815730625072397	0.117117285093006	0.457001268899775
Merged-chr19-41913060-2	chr19	41912560	41913560	+	785.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	1189.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	4.98307648982141	5.06038078562828	5.18516809696022	4.77754900689007	4.79783687094295	4.8757513805509	-0.567090683474438	0.133571772145686	0.488819290786001
Merged-chr13-74390894-4	chr13	74390394	74391394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14328.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	5.34147049386767	5.41902582048991	5.36183215447116	5.21839228669556	5.3665838859906	5.20049264538561	-0.206662323705356	0.546025955452645	0.85849711034619
Merged-chr7-88225499-2	chr7	88224882	88225882	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52703.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.23469589552403	5.48627417072478	5.7704737695841	5.6808622021445	5.73729437773634	5.94646993019755	0.526541482751521	0.126017893937331	0.474777397325473
Merged-chr13-58601456-4	chr13	58600949	58601949	+	916.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	9428.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	2.48301979940332	2.19128166955524	2.21942085366422	2.48554664612172	2.38972915596918	2.80598100823862	1.61790811419559	0.0774446902198863	1
Merged-chr10-120883024-3	chr10	120882516	120883516	+	857.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	15955.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	4.91744491837836	4.79908295348153	4.68781719354264	4.62853214449868	4.43167196544417	4.63268719374782	-0.592398343936445	0.149752319512983	0.516223009447192
Merged-chr1-138912464-3	chr1	138911957	138912957	+	929.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35507.0	NR_138576	75546.0	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	3.53243138764577	3.22728669976935	3.10456886954756	3.12645484116269	3.03100678923081	3.35296056169289	-0.555767162954751	0.406579330364638	0.780855477927353
Merged-chr9-66059419-2	chr9	66058919	66059919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-750.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	5.48821474133794	5.58584831264442	5.49816553648169	5.6401333243175	5.60235004631885	5.31082424226754	0.0179748891083305	0.956943857311012	0.989887454023164
Merged-chr7-16313648-1	chr7	16313148	16314148	+	1000.0	f0_c57.idr	exon (NM_133234, exon 3 of 4)	exon (NM_133234, exon 3 of 4)	4065.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	8.81911582684263	8.80573962353215	8.48875283195457	8.57151029168937	8.94115666091202	8.52734456766607	-0.024749530739538	0.916307415128785	0.981243905880233
Merged-chr8-69087981-3	chr8	69087469	69088469	+	749.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-767.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.88664853012906	6.89019704054986	6.81435090513448	6.72334686674303	6.75215687315499	6.54370595594333	-0.285297240490699	0.257914198730783	0.655403269239891
Merged-chr14-75179460-4	chr14	75178956	75179956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43031.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	8.05208854268801	8.06773761762058	7.86279184391735	8.2069320892482	8.39005121933142	8.24443811121253	0.399252932412101	0.0626947950003896	0.325597576182484
Merged-chr19-46339840-4	chr19	46339339	46340339	+	981.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	7.34066004071378	7.26307542168632	7.29645259859699	7.45769568202049	7.66579366614671	7.31935844617003	0.290439370856763	0.221022633646034	0.61561513090473
Merged-chr14-105505188-3	chr14	105504686	105505686	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	6398.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	3.18687014898229	3.32500223142346	3.39382967676622	3.45408225529137	3.4437900903875	3.862424374205	1.09168547966212	0.0759290943107651	0.362681290436862
Merged-chr9-100489087-3	chr9	100488576	100489576	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2603.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.84804104601236	3.62287721701116	3.71180442143699	3.33972807324006	3.17224012616003	3.40551218285359	-1.64828562057473	0.00648379574199692	0.0739147384710343
Merged-chr7-45705670-2	chr7	45705159	45706159	+	829.0	f0_balb.idr|f0_c57.idr	TTS (NM_009800)	TTS (NM_009800)	412.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	7.31717945497954	7.54250686677509	7.70610128624868	7.65748342661561	8.0917575534331	7.72787071968087	0.461963144118119	0.0703422543219589	0.347464428472636
Merged-chr13-97190573-4	chr13	97190073	97191073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 3 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	7784.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	3.74277630001934	3.57730995989809	3.71580922077011	3.56724795995593	3.58713647833384	3.73452937897284	-0.178247160693426	0.745273862498051	0.936116619770028
Merged-chr13-52031620-4	chr13	52031063	52032063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65178.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.5756807284758	5.71348441757291	6.21782600569077	5.75353394074621	5.9320141766943	5.85418135092194	-0.00235130145720825	0.994525290410293	0.998946345565713
Merged-chr8-61584845-4	chr8	61584353	61585353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	L2a|LINE|L2	6316.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.34618632930236	5.07133153711123	5.05110488302795	4.98504162451612	4.84728545993121	4.97271348592826	-0.504671744097775	0.179509504342231	0.561084363371338
Merged-chr1-184562457-4	chr1	184561958	184562958	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4767.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.65509827469938	6.44927824039311	5.95561658589472	6.06590072775258	6.00533740313609	5.66744937046181	-0.799259662815538	0.0188756531711846	0.155448712250449
Merged-chr10-95844046-4	chr10	95843554	95844554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-96609.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.52351172702908	4.39408543306857	4.8476121997679	4.71918462523921	4.77600357817868	4.94620219544415	0.524268688838025	0.215915118799931	0.609299440900042
Merged-chr2-27755067-3	chr2	27754557	27755557	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	44474.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.72743061089487	3.72120183672338	4.58459064614902	3.72302866496744	4.04610877614535	4.27995040737535	-0.119848548091494	0.845824498654452	0.963945177091542
Merged-chr4-128609091-2	chr4	128608591	128609591	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177758, intron 1 of 7)	intron (NM_177758, intron 1 of 7)	1007.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	3.11426770109255	2.83580290710194	3.19165312204311	3.12444447063144	2.99635261014718	3.42201592404777	0.580506571339493	0.403540223359701	0.778882003719199
Merged-chr4-132305439-4	chr4	132304977	132305977	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	6.55693791415963	6.90928770908596	6.60153035429958	7.12366921289782	7.44085029533792	6.66118786687339	0.648384767823146	0.0353953360517315	0.230982129592808
Merged-chr8-120124453-4	chr8	120123952	120124952	+	898.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	10300.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	4.76755345631438	4.83174935882821	4.88688626209727	4.84003147542026	4.57148814856616	5.05330533414214	-0.00968323589507825	0.981129439921005	0.995687678606673
Merged-chr16-14351734-2	chr16	14351234	14352234	+	845.7333369999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9824.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	6.45476480000701	6.36735419118503	6.64904896055196	6.83073836174071	7.00145360531196	6.64202495749499	0.56123123417767	0.0382409061798638	0.241991734840224
Merged-chr4-155219188-2	chr4	155218687	155219687	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	3348.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.74455408616326	3.62711797648302	3.38845177083484	3.70342386290756	3.38576525158615	3.68535769154425	-0.0238629194426099	0.967937548386967	0.992633833139547
Merged-chr9-106343475-3	chr9	106342863	106343863	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-25269.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.84052559503239	2.92265162437853	2.89813220096306	2.6593594155653	2.43083983224945	2.79065091772187	-1.44380604904602	0.0697904584312512	0.345847445961977
Merged-chr11-87019654-4	chr11	87019139	87020139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25877.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.56118310605159	6.27732202188052	6.04375511914227	6.38761987924568	6.73318095295072	6.32730016082872	0.298533657187491	0.334878731362393	0.725211462525386
Merged-chr13-51351013-4	chr13	51350529	51351529	+	838.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57589.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	2.28664720617241	2.31889296327831	2.46558541844919	2.34499129357314	2.15265229941909	2.34899122143072	-0.498926926713935	0.558635163390574	1
Merged-chr2-145832800-7	chr2	145832315	145833315	+	986.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	46699.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	7.44175571369674	7.45472407022698	7.29748927103011	7.13542432880806	7.3947494733933	7.05527612282538	-0.282289517968509	0.248766713840314	0.645819769301048
Merged-chr1-120072691-1	chr1	120072191	120073191	+	825.0	f1_balb.idr	intron (NM_019432, intron 1 of 1)	MIRc|SINE|MIR	1089.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	6.18933894155902	6.38080625854465	6.42015837054393	7.00757407635744	6.91716659015124	6.76894429805026	0.914953358820381	0.000525335441666557	0.0108953418320516
Merged-chr18-69593358-4	chr18	69592847	69593847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	247187.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.81137654255468	6.87290091488953	6.80787212840337	7.03029568524132	7.25722804934968	7.14014670639759	0.483495211908005	0.0470252597819746	0.274568648932604
Merged-chr13-81401965-4	chr13	81401473	81402473	+	838.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	MTE2b|LTR|ERVL-MaLR	231171.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	5.66384902075191	5.74549615247798	5.74854229494045	5.8105313036541	5.91508627855138	5.6201317081534	0.144878137653858	0.642913652175097	0.899548231805501
Merged-chr4-57955653-4	chr4	57955148	57956148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	CpG	763.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	8.03452230115934	8.07449405167557	7.95092014580035	8.3475477438323	8.55277353300701	8.16055369270008	0.487564994959916	0.028721831626908	0.203135245729856
Merged-chr9-65001138-3	chr9	65000612	65001612	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20605.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	5.74189213596464	5.92378788948885	5.85633636223846	5.49960711585136	5.83717587438283	5.76890385711102	-0.232888855808173	0.465078766944909	0.816792117070463
Merged-chr4-6369179-4	chr4	6368677	6369677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3497.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.01534955677799	7.2184155820834	6.74686649903998	6.98127981805612	7.31865518344155	6.9298930407899	0.12130430224827	0.661376702279556	0.90636613540322
Merged-chr19-11343294-4	chr19	11342785	11343785	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-7139.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	4.48651637596575	4.43644811227161	4.79373983701466	4.49849354450432	4.46148461114704	4.6759702156893	-0.0711032921737932	0.86967236242747	0.969866749756942
Merged-chr5-21383687-4	chr5	21383191	21384191	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11018.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	5.74212583441921	5.61068911926336	6.04909032893532	5.8083459176874	6.06990939702671	5.83419483727787	0.206148638177029	0.524337029343627	0.848650426908011
Merged-chr10-22304735-1	chr10	22304235	22305235	+	913.0	f1_balb.idr	intron (NM_009018, intron 6 of 6)	L1M3|LINE|L1	-1985.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	3.58988327690599	3.68747091799288	3.64750779271303	3.27864933648598	3.11604950092528	3.2777696815627	-1.68561597776604	0.00618459668787013	0.0713148449562497
Merged-chr7-35137725-4	chr7	35137203	35138203	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18410.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.08032928020215	4.21939292551217	4.46260231599975	4.20412614755079	4.52867460658533	4.85420881515017	0.750089606056336	0.123668769501562	0.470659623115383
Merged-chr1-127773265-2	chr1	127772765	127773765	+	753.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028399)	promoter-TSS (NM_028399)	789.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	5.3885087691635	5.73403820780473	5.72431299187204	5.52673331202528	5.94925467265118	5.88364300434321	0.328449909847599	0.335258007778446	0.725385451575238
Merged-chr18-5680329-4	chr18	5679814	5680814	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	Lx9|LINE|L1	87667.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	3.4532042163202	3.25622550875017	3.25756214460255	3.54734021370796	3.40679875918766	3.60798146178673	0.718628230615802	0.231877952924677	0.628047783269563
Merged-chr3-109340726-5	chr3	109340306	109341306	+	923.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020505, exon 1 of 27)	5' UTR (NM_020505, exon 1 of 27)	123.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.69071372015315	5.43191632334481	5.90554061076907	6.08672311535489	5.57815754242963	5.69564806441268	0.230345237028298	0.514546440792069	0.843107848235413
Merged-chr9-86571882-4	chr9	86571351	86572351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145969)	promoter-TSS (NM_001145969)	-9.0	NM_028352	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	6.10598886545795	6.10561033609279	6.08777073625479	5.84847866958655	5.67950013230143	6.06202999092454	-0.421386444135953	0.163225195840349	0.536951138431397
Merged-chr17-34286984-8	chr17	34286483	34287483	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	788.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	6.44084477570929	6.18112386584393	6.09945183877199	7.43666389036833	7.75610856910664	7.45441701221384	2.00432425111701	2.01751223935473e-13	4.41771469505863e-11
Merged-chr10-127675929-2	chr10	127675429	127676429	+	873.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1136.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	5.45615694217539	5.51395822396158	5.57620153048019	5.83002193634091	6.30068601349436	6.08298718385114	1.03967521644448	0.0012491211427103	0.0214302828953895
Merged-chr13-101848371-2	chr13	101847871	101848871	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80154.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.50465970362336	2.63170466445805	2.78921037402752	2.5572032750963	2.68059127332767	2.61818274019632	-0.11698402456373	0.879117890935737	1
Merged-chr5-135705528-4	chr5	135705045	135706045	+	962.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	B4A|SINE|B4	16400.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	4.65450612825119	4.7853133689894	4.80075126702484	4.57282747556548	4.57586776361549	4.71535515952769	-0.304011126789997	0.45241070940692	0.809413225860733
Merged-chr2-69789614-4	chr2	69789126	69790126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028521)	promoter-TSS (NM_028521)	-111.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	7.50973317721725	8.00778454724417	7.17635146844131	7.53266825733094	7.95793572262276	7.46108451404963	0.0800616268365968	0.794477208381337	0.950740084493388
Merged-chr8-41240471-2	chr8	41239986	41240986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	727.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	6.75103794668404	6.85587936174258	6.56864957207257	7.34348292324044	7.28153808535148	7.1019866818521	0.778535240376947	0.00206729380662095	0.0317313010627773
Merged-chr15-39943144-6	chr15	39942624	39943624	+	996.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	870.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	6.44083519377618	6.72249596634657	6.39884827867226	5.95174208542729	6.05923927661232	5.9482632748114	-0.919929487823801	0.0014758335291459	0.0244186033591513
Merged-chr18-67724578-4	chr18	67723991	67724991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001127177, exon 1 of 9)	exon (NM_001127177, exon 1 of 9)	130.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	8.43961136430557	8.25262766893194	8.31217977928784	8.26841418420863	8.20381772984182	8.00207042975022	-0.239264516055071	0.26629588260187	0.664107531830852
Merged-chr11-22872485-2	chr11	22871982	22872982	+	552.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-12146.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.28649351269208	6.31150164796211	6.23556595520162	6.30418706077874	6.17417320126083	6.2956512438476	-0.0431606503729653	0.874671710800152	0.970754540400126
Merged-chr4-128616020-4	chr4	128615491	128616491	+	876.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	2628.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	6.13453009224939	6.05266956836138	6.39774199805935	6.35463301186711	6.45700809355492	6.6093573652577	0.46399564872075	0.103674112015484	0.429329393947366
Merged-chr13-34303611-4	chr13	34303106	34304106	+	817.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 2 of 10)	intron (NM_001033167, intron 2 of 10)	41576.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.682283785734	4.53524606519693	4.71333187267774	4.70199493116088	4.26600754597134	4.36088158427455	-0.459519203127238	0.301702503558652	0.698402056366902
Merged-chr9-83592116-3	chr9	83591647	83592647	+	743.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	43809.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.75131485585125	2.73492660050206	2.62152047847323	2.72748546865666	2.56800831847035	2.93984817181025	0.21980571082804	0.772429259091322	0.943716660313239
Merged-chr3-129725255-4	chr3	129724766	129725766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310737)	promoter-TSS (NM_001310737)	-180.0	NM_001329594	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	7.25751018836447	7.57213119947551	7.3077094405651	7.45152212061932	7.56967428607028	7.18401591340871	0.0435707051952705	0.863182728513356	0.968203690581793
Merged-chr14-49064439-2	chr14	49063939	49064939	+	713.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-2110.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	4.33029450199585	3.99222136578029	4.04898086935539	4.23368882906722	3.74880847726573	3.91572007923891	-0.448909410284118	0.396658731260427	0.773701467493871
Merged-chr12-25100355-1	chr12	25099855	25100855	+	691.0	f0_balb.idr	Intergenic	Intergenic	-4263.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	8.53661438291089	9.29941532543218	8.58968998563013	8.75532988744235	9.26237363739656	8.58068094492443	0.0554393975290969	0.855555668702405	0.966244542232428
Merged-chr2-127143518-4	chr2	127143046	127144046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163527)	promoter-TSS (NM_001163527)	-89.0	NM_001355634	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	4.59850256035936	5.01688635715034	5.02956115375985	4.6604192034164	4.83484191564045	4.88680540041839	-0.216625384222488	0.599922880219529	0.881311823896233
Merged-chr2-5034793-4	chr2	5034294	5035294	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 8 of 13)	intron (NM_001356487, intron 8 of 13)	-22003.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	6.55366077138351	6.34078230366863	6.3986889455548	7.1136869469657	7.5018770302499	6.94536425406289	1.21329142388139	1.60777357351733e-05	0.000603971212213229
Merged-chr7-25385854-4	chr7	25385339	25386339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073028)	TTS (NR_073028)	4273.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	6.28597011766281	6.41536550498406	6.76397754250667	6.40434267237406	6.46054121706786	6.62567703880367	0.00376529204550612	0.989559295303554	0.997611022725407
Merged-chr5-137864203-4	chr5	137863705	137864705	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6156.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	5.68011668313159	5.59201086575788	5.54102569367375	5.72788036888132	5.56931928210684	5.51606549387886	0.000774604737303188	0.998071492080841	0.999579683478894
Merged-chr19-55661252-2	chr19	55660752	55661752	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	40952.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.32875424668162	5.25236828642518	5.34700653911282	5.19268913856861	5.0437819978601	4.93505547223717	-0.496669111189792	0.165284415082606	0.540072074597
Merged-chr2-104712252-4	chr2	104711737	104712737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177190)	promoter-TSS (NM_177190)	-75.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	5.73960251408324	6.00309784595597	6.19049372557097	6.06421407593776	5.66603365519681	5.75144441026092	-0.255637227566531	0.438696366068839	0.800716136436254
Merged-chr8-106411753-3	chr8	106411238	106412238	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3601.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	6.75570223997065	6.68470284326816	6.84255012409132	6.98804763499622	7.17197729748228	6.6100286322381	0.306685179379545	0.266042941259607	0.663824402864358
Merged-chr9-99089212-2	chr9	99088712	99089712	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 7 of 23)	B1_Mus2|SINE|Alu	50999.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	6.62073840623308	6.63244759553501	6.67121867453966	6.35034674673045	6.40506690881565	6.1927600006304	-0.504925707149658	0.0577329305749269	0.310466082031831
Merged-chr16-33532290-2	chr16	33531790	33532790	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	13695.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.90238946840337	3.93385113216653	3.61699712904356	3.49113466833797	3.5053695639195	3.51876117071114	-1.13768576190281	0.0441208508681137	0.264311690072695
Merged-chr14-54383478-4	chr14	54382960	54383960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22619.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	8.47732965631007	8.51668232302032	8.16584634913409	8.10592367432008	8.54118786395235	7.59433180942153	-0.3477431032825	0.241225801161976	0.638385260200477
Merged-chr6-86570965-4	chr6	86570479	86571479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43578.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	3.57351328987254	3.34989606656879	3.75713675134359	3.46730217999281	3.4282673565534	3.52293220695442	-0.336147666025546	0.568202909929294	0.868531823304055
Merged-chr5-20749655-4	chr5	20749147	20750147	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132477.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.75491787738887	4.67303005817046	4.82953474622298	4.72837592760853	4.42604561971952	4.62643994802659	-0.371752573959415	0.369873067807284	0.754352114878
Merged-chr16-57423609-4	chr16	57423124	57424124	+	915.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	70347.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.8355770368504	6.90139390008004	6.63454569850233	6.64938526438922	6.57232115109109	6.6260303448235	-0.296846626399641	0.248282277337529	0.645445615702094
Merged-chr19-55655714-4	chr19	55655243	55656243	+	920.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	(CAGTG)n|Simple_repeat|Simple_repeat	46461.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.11825886510243	6.17976053717545	6.02991266840433	5.83414944180175	5.93172815542458	5.5958577555923	-0.534972648767811	0.0800961429421605	0.374354876252951
Merged-chr5-144267751-3	chr5	144267228	144268228	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 12 of 13)	intron (NM_025833, intron 12 of 13)	-9333.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	3.10837614890413	2.91549534788092	3.05909734191989	2.76069341799999	2.56020467850894	2.89642373833523	-1.51639023674842	0.0459393966834652	0.27087055833601
Merged-chr13-95942059-4	chr13	95941550	95942550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-50128.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.33333427685847	3.0267003090256	3.01389605385933	3.54812739971578	3.79270004479389	3.52079780477565	1.94317546276688	0.00422278964352085	0.0541551721992057
Merged-chr9-61030229-2	chr9	61029729	61030729	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13160.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.74922074866242	3.4069111017494	3.61594564403254	4.28057384689458	4.07649304637747	4.28138806255643	1.94475520140892	0.000441172389741527	0.00953234801496052
Merged-chr11-75631367-2	chr11	75630867	75631867	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 1 of 11)	intron (NM_008916, intron 1 of 11)	347.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	5.81526080256313	5.59971930064548	5.39110824900982	5.77432177618616	5.95539213385897	5.48801374790629	0.260761090223689	0.451697775201417	0.809233899859178
Merged-chr1-171617680-2	chr1	171617180	171618180	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10270.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	7.38727950923822	7.43679519046145	6.90644166771064	6.66204064020383	7.01038228663669	6.44363856117609	-0.808674999861715	0.00728459652145031	0.0804641852325551
Merged-chr9-106476756-2	chr9	106476301	106477301	+	793.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	148.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	6.48924074477816	6.48278980762926	6.54410190828836	6.51234407972676	6.455452135034	6.38566171400022	-0.0786219625134742	0.763674803706176	0.941793063578371
Merged-chr13-112002769-4	chr13	112002275	112003275	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134839.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.49816773321784	3.53543109523259	3.29162965069563	3.27611949536222	3.2190761003104	3.05285729067496	-1.04899001952999	0.102940381616165	0.427802580836971
Merged-chr4-35994190-4	chr4	35993675	35994675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	MERVL_2A-int|LTR|ERVL	-148971.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	4.51369584091689	4.8114483094956	4.95267012153367	5.20395774659972	5.08190455516526	5.05240390136841	0.77092469362623	0.0509222330858433	0.287477927308966
Merged-chr4-139212308-4	chr4	139211795	139212795	+	928.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	MIRb|SINE|MIR	18184.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.63544038086874	5.39546431173983	5.92122678741937	6.46314676714299	6.50683320851037	5.83181436748919	1.13487351807463	0.00125013108378048	0.0214362211638898
Merged-chr1-64290712-2	chr1	64290212	64291212	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169323.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.32018098519111	3.03905454977794	3.26037054704163	3.31010565979198	3.06414755181238	3.21781982223547	-0.0517739326598465	0.936392084580669	0.986037792257163
Merged-chr13-105293439-4	chr13	105292949	105293949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027934)	promoter-TSS (NM_027934)	-435.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.71184987776201	6.92902426676462	6.84550316240735	7.02543591567725	7.10170294052992	6.9470855874126	0.304964132797387	0.217869368636215	0.611901565759233
Merged-chr14-30611172-2	chr14	30610672	30611672	+	709.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310682)	promoter-TSS (NM_001310682)	-862.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.71208374344985	3.90960870050533	3.98187919014668	4.18831483354412	4.17592145438786	4.14574629006484	0.901994615590154	0.068903588638392	0.343518861798881
Merged-chr10-81257996-4	chr10	81257428	81258428	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285853, intron 1 of 12)	intron (NM_001285853, intron 1 of 12)	629.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	3.25591304616757	3.1445651385245	3.30368623772894	3.1393959036203	3.08016936688325	3.20689859207944	-0.401763547158248	0.525430947562777	0.848999112257332
Merged-chr1-156458780-1	chr1	156458280	156459280	+	629.0	f0_balb.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	15548.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.07983337310295	5.50339112844012	5.31691462002134	5.08437864206146	5.42009826114143	5.0047779568917	-0.235455387398851	0.541571941165635	0.856866097372447
Merged-chr5-31940874-3	chr5	31940377	31941377	+	780.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-195595.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.59567393771262	4.33010691498874	4.2984147207995	4.33573652509145	4.2068925320733	4.27443093626005	-0.393500727959935	0.387352358535928	0.767583116195701
Merged-chr4-149163328-2	chr4	149162828	149163828	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 3 of 12)	RLTR12B|LTR|ERVK	2754.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	2.87465759697634	3.18920823653582	3.26947423107418	3.28079505014817	3.37949217152969	3.28486622774306	0.830154481933916	0.212730900159101	0.605304269070836
Merged-chr2-90539136-1	chr2	90538636	90539636	+	657.666687	f0_balb.idr	intron (NM_008982, intron 1 of 23)	L2a|LINE|L2	41511.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.35486698264698	5.22857959743063	5.1153271374817	4.89151870668828	4.99420011667557	5.36744833382246	-0.316130459054701	0.404405030315214	0.779560610737132
Merged-chr15-51951678-4	chr15	51951164	51952164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	40096.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	4.86169480173548	5.26935392520927	4.64716303106799	5.4776075369719	5.64826058064833	4.81004140667327	0.823452508342971	0.0726239649534216	0.354022158163049
Merged-chr13-110902961-3	chr13	110902471	110903471	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-528.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	6.03408646089805	6.48137906879472	6.0893070947922	6.21217446510064	6.32366933400116	6.21549512515372	0.047267921155379	0.875363128898397	0.970995160803709
Merged-chr9-62812924-4	chr9	62812439	62813439	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1291.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	7.4262565272428	7.39742547522299	6.90144765765109	6.97362571618016	6.95476505463565	6.57319236865946	-0.630841277065727	0.0270104782862345	0.195659395002663
Merged-chr9-21546232-4	chr9	21545738	21546738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-656.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	6.6665216485647	6.52931341552129	6.65056072121134	6.53788081577259	6.81196519744079	6.77170402315646	0.157724873635366	0.547887610213045	0.859455567919717
Merged-chr4-40207284-2	chr4	40206784	40207784	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 17 of 17)	intron (NM_172689, intron 17 of 17)	32541.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	3.38483236394291	3.47347623409792	3.52320235089607	3.30288585868372	3.41475187892914	3.31869525901273	-0.420544073550364	0.478938183915193	0.823939232913004
Merged-chr6-34481394-4	chr6	34480893	34481893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	5037.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	3.50284221980127	3.25610326085139	3.25648803730476	3.39548803112193	3.44605557548648	3.65189300481141	0.572651669867559	0.347369141590968	0.735497468013591
Merged-chr10-67538780-4	chr10	67538239	67539239	+	892.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347458, intron 2 of 2)	CpG	809.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	3.99028930209556	3.34427412596389	3.75488561197503	3.59467432979539	3.5327499742213	3.61629186875204	-0.494450234183118	0.414335172544953	0.785785276982346
Merged-chr11-60417169-4	chr11	60416686	60417686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145427)	promoter-TSS (NM_145427)	41.0	NM_025757	66771.0	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	7.38378997263962	7.29569868571976	7.20497357804108	7.4770544495927	7.24645364688257	6.76031695634909	-0.140251231301321	0.616738712447366	0.888493278598989
Merged-chr12-101084598-2	chr12	101084098	101085098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-896.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	4.66427965121187	4.72993976902245	4.90810099771321	4.51423376184488	4.35191058905202	4.64444318032588	-0.642553532838162	0.127624065040093	0.477595826573243
Merged-chr3-95662956-4	chr3	95662437	95663437	+	861.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	4216.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.91203312727882	6.64559823089882	6.56469062851442	7.11672619467251	7.35695365369889	6.96098385637745	0.675164836881786	0.0125148726078654	0.117705156545186
Merged-chr14-105288732-4	chr14	105288241	105289241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 2 of 7)	intron (NM_029561, intron 2 of 7)	30068.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	4.94278545757648	4.47253864852658	4.87782813948122	5.15429195963532	4.57834472896199	4.83204264404494	0.21661048564135	0.626911718683947	0.892975730763041
Merged-chr6-71923161-2	chr6	71922661	71923661	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 6 of 33)	LTR10_RN|LTR|ERVK	14108.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	1.98172002949567	1.98771481722219	2.18622039464966	1.97204069188993	1.88878606757951	1.99811111197602	-0.80903244758739	0.391212677573954	1
Merged-chr3-95312602-2	chr3	95312102	95313102	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2588.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	2.59499321476264	2.72388576441449	2.7707971957185	2.79143492019967	2.64189994162187	2.96135106471558	0.536085491670498	0.471441357833448	0.81999367601546
Merged-chr6-128839660-4	chr6	128839155	128840155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13340.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	6.97242576154751	6.92278420648098	6.91539606147825	6.75922484273924	7.06454992247829	6.90242673358685	-0.0268523518673309	0.914837856457944	0.980938755430376
Merged-chr1-176224038-4	chr1	176223543	176224543	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-10101.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	5.3705798712293	5.47188769019127	5.25301226389694	5.38766954408099	5.71579765872884	5.24985183081967	0.207540461561219	0.56181667695559	0.865580593452079
Merged-chr5-43888750-2	chr5	43888282	43889282	+	719.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	B4A|SINE|B4	19973.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.55481970870389	3.58483412954138	3.67032951292858	3.25696885907117	3.45810238954481	3.63888888063624	-0.529937086074715	0.367896891662292	0.752923975674939
Merged-chr1-88290104-4	chr1	88289626	88290626	+	777.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12547.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.49635690094335	3.74769001339767	3.9770291404998	3.70915749693143	3.53903489319868	4.36944683877996	0.515088184606679	0.407496366698	0.781633737084177
Merged-chr1-15799114-4	chr1	15798614	15799614	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6532.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	3.86835552540145	4.14297705005623	4.16603689502331	3.52469768856121	3.6853053371075	3.65061109087515	-1.4188378932926	0.00971040564803092	0.0984385274319391
Merged-chr12-59216888-4	chr12	59216396	59217396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	2587.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	7.30851033752688	7.52209238267849	7.33934287714561	7.42896229507293	7.48735178480154	7.41825714523292	0.074134418912091	0.746503029831182	0.936300236930265
Merged-chr5-138441506-4	chr5	138441041	138442041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028130)	promoter-TSS (NM_028130)	65.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	5.74847557937916	5.94462446537811	5.77994414251472	6.14958985079318	5.83740973709979	6.07878381866395	0.335792675582093	0.276487170607665	0.673916249833617
Merged-chr11-22515332-5	chr11	22514923	22515923	+	823.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153596, intron 1 of 3)	intron (NM_153596, intron 1 of 3)	3140.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.82376326860558	4.71852176551213	4.5557531467985	4.0720198735013	4.24615189198273	4.05961032052203	-1.48164541339715	0.00138006181644704	0.0231890516201384
Merged-chr14-51157045-3	chr14	51156593	51157593	+	739.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-5167.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	3.81593318336473	3.72061879604308	3.63617798911786	3.98401111421813	3.54668289791118	3.86503499789604	0.249830562458841	0.654050838139757	0.90364131093357
Merged-chr11-11558878-4	chr11	11558378	11559378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68960.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	3.9105405816842	4.05837066345342	4.1231666209933	4.24393256679914	3.88353378944807	3.89787082379904	-0.0298085490830694	0.953352654219231	0.989446911725587
Merged-chr13-38528003-4	chr13	38527524	38528524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289599)	promoter-TSS (NM_001289599)	-110.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	7.70674519366606	7.72684923069292	7.68583070817704	7.46360751146127	6.97365250121396	7.48026079824935	-0.568520636016756	0.0262148630827425	0.192251571248796
Merged-chr3-96055640-3	chr3	96055123	96056123	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 2 of 14)	intron (NM_013841, intron 2 of 14)	2832.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	2.84631109628756	3.13046424247062	3.23078641162331	2.96860929679279	2.79251023883766	3.19325068978012	-0.393132021471474	0.582891438659716	0.873826743013405
Merged-chr5-64506370-3	chr5	64505881	64506881	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29373.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	5.10557708207396	5.02983606212401	5.18095742261159	5.30022115687092	5.32856137833636	4.9996858018265	0.260795210587096	0.474155638928679	0.821281508856919
Merged-chr2-119478047-4	chr2	119477634	119478634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026574)	promoter-TSS (NM_026574)	-505.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	8.7551579490078	8.74299965531848	8.53079311639509	8.67153630604223	8.96390382803411	8.57530098978913	0.0961342403515428	0.665672470461749	0.907880610488534
Merged-chr8-126582733-4	chr8	126582222	126583222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10714.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.021655526228	5.85304471428658	5.54468615629261	5.4805515143269	5.60309483154387	5.84697029904405	-0.344044683229931	0.3087084035014	0.704643548588986
Merged-chr13-42820143-4	chr13	42819661	42820661	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-46086.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	4.02177005903477	3.71567971332619	3.82020189486033	3.7654761556256	4.20320620042281	4.08440922296646	0.534050835682251	0.320069886771175	0.713893850367042
Merged-chr2-150825449-2	chr2	150824949	150825949	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 15 of 19)	ORR1A3|LTR|ERVL-MaLR	17121.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.36559808553067	3.20476126519099	3.22959899187055	2.98642857906414	3.13473368099918	3.06511201375708	-0.879107494478272	0.178620246483378	0.559936447278822
Merged-chr13-89490869-2	chr13	89490369	89491369	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49767.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.46734777087107	3.77026006517005	3.74679464025543	4.31404308416514	3.94998807690904	4.25010899187426	1.57783408549422	0.00397615815075292	0.0517031047675963
Merged-chr11-8561057-1	chr11	8560557	8561557	+	684.0	f0_c57.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	103478.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.60852762932227	2.56776286862005	2.8461430793209	2.60231704141543	2.46047360279508	2.68124920512027	-0.534220193054727	0.492169031288649	1
Merged-chr9-35040322-2	chr9	35039822	35040822	+	888.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76406.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.79394072538472	4.64421816155245	4.80501734076754	4.91571157760755	5.03912727467471	5.04926755607776	0.572112431807784	0.136058133773694	0.492921904596115
Merged-chr4-135272155-5	chr4	135271624	135272624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	636.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	7.97298474878454	8.06678817288779	7.83344612748783	7.66082639384551	7.79115200028742	7.85715156004264	-0.279781595451023	0.204568624523208	0.595186758604394
Merged-chr2-30955050-2	chr2	30954550	30955550	+	827.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133673, intron 2 of 4)	intron (NM_133673, intron 2 of 4)	2049.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	3.91477830839726	3.81840352376421	4.13213859413539	3.82271571498773	3.75457629416085	4.02210597760664	-0.283307711495409	0.586895355555347	0.875701838845342
Merged-chr4-150882787-4	chr4	150882289	150883289	+	928.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	27132.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	3.67430861854825	3.55578673735398	3.76548044477524	3.51840066850797	3.27590230994056	3.73682407474011	-0.534159014430753	0.367166716369367	0.752113401392775
Merged-chr2-166027419-2	chr2	166026919	166027919	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	34782.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.00857413693982	4.93286526866124	5.11870516838185	4.62442758757642	4.77761293721944	5.15054550246269	-0.349556040612788	0.386004806376246	0.7668275851124
Merged-chr4-130810314-4	chr4	130809816	130810816	+	971.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	17779.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.90191286114141	5.79890787400532	6.22652666855451	6.15498576204099	5.96197752109694	6.10384701759133	0.166564694220473	0.588834825330219	0.876650937479947
Merged-chr3-127787322-4	chr3	127786872	127787872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-2500.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	6.12110436226366	5.88563413809343	6.0640837163032	5.90951767270042	5.66738294711377	6.20629108879307	-0.162700832886536	0.613872060522399	0.887317203673931
Merged-chr9-95639584-2	chr9	95639084	95640084	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1956.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	6.74425086751016	7.41301529898226	6.82974091466255	7.37045776798503	7.89621658081825	7.03901998311113	0.673744723371397	0.0453187779127708	0.268753799778025
Merged-chr1-138506836-3	chr1	138506340	138507340	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 7 of 9)	intron (NM_021605, intron 7 of 9)	112917.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.84196836530153	4.05011944856578	3.8927222666058	4.17141534738604	4.02530369382656	4.24654869818004	0.614980064968976	0.215451756975539	0.608899282194137
Merged-chr7-67645334-4	chr7	67644829	67645829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175124)	promoter-TSS (NM_175124)	-93.0	NR_028143	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	6.99040385189298	7.41381026246887	7.20405330473274	7.1360521576882	6.97435937987662	7.23815639566533	-0.154163549491699	0.552160850831096	0.861546661145201
Merged-chr11-23753340-3	chr11	23752842	23753842	+	867.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	17628.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	4.95010621031033	4.73826269206051	4.51867660853761	5.08352674268237	4.70774584981985	4.95133890690828	0.360443167256342	0.391720202333703	0.770712638022881
Merged-chr5-54019699-4	chr5	54019185	54020185	+	983.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	21162.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.04137141490065	5.25835718845146	4.83254766717355	5.26332755034343	5.15259391212546	5.1932194162901	0.276898214087809	0.460922716347587	0.814802506471053
Merged-chr11-86756944-4	chr11	86756375	86757375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	692.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	8.848828472073	8.98281511314465	8.56660439231401	8.86060815415415	9.17754763581574	8.75725312839522	0.18336466446522	0.436666095981171	0.799551248563286
Merged-chr4-41626673-1	chr4	41626173	41627173	+	757.0	f1_balb.idr	intron (NM_175138, intron 13 of 19)	intron (NM_175138, intron 13 of 19)	13629.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	2.9706461821721	3.08244159025777	3.06978310149316	2.77565685625399	2.74933020387218	3.14120839625936	-0.706576992963106	0.324722176232965	0.717629886058606
Merged-chr11-120949016-4	chr11	120948518	120949518	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038654)	promoter-TSS (NM_001038654)	-49.0	NM_001038653	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	5.70502459244884	5.69093489450781	5.84017867881299	5.95016849998708	5.54323071001209	5.69889209663419	-0.00646987549744443	0.984095862069032	0.996464361754829
Merged-chr2-167771764-4	chr2	167771266	167772266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80589.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.61492803957087	6.27868857189496	6.56229326734346	7.06318666513023	6.88231465057616	6.4949451625029	0.555333611377257	0.0577085471236421	0.310395138271753
Merged-chr2-78054113-4	chr2	78053613	78054613	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108098, intron 1 of 6)	MER34A|LTR|ERV1	2936.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	2.78470723019187	2.81142854079669	2.80759226497173	2.52616397320175	2.48478350543384	2.49977422309782	-1.77797814275502	0.0257202083346759	1
Merged-chr17-31853854-4	chr17	31853353	31854353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	1951.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	4.65219052565781	4.71094402049913	4.7452560522575	4.61886613881005	4.78179349364987	4.77266194648402	0.0616770212614128	0.877383627013117	0.971560353131186
Merged-chr8-105851962-4	chr8	105851410	105852410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177150)	promoter-TSS (NM_177150)	98.0	NM_177150	320394.0	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	5.0851383662576	5.4011362042234	5.36286555444131	5.09637478810951	5.33619280350951	4.99197248293942	-0.255887434942595	0.493713665227943	0.831564039032563
Merged-chr9-57642473-2	chr9	57641973	57642973	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	3180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	4.69684755868144	5.20785709531321	5.67800560750341	5.63075372094232	5.47102431229684	5.47792306352352	0.546330953581938	0.196317783494196	0.584112516346026
Merged-chr18-82910941-3	chr18	82910444	82911444	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	65.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	7.83393777787892	7.76865821462748	7.6898714972545	7.80042318781033	7.91130514409058	7.87364788536546	0.136429939495608	0.524663441470589	0.848752537154544
Merged-chr2-32437240-2	chr2	32436740	32437740	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	L1MEc|LINE|L1	-6089.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	2.79349460660404	2.80894795263647	2.89063978644933	2.75817878856022	2.69815717104122	2.96268554267685	-0.126275456551676	0.860203921787647	0.967441103100897
Merged-chr11-82866672-4	chr11	82866166	82867166	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	4078.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	5.53724604455938	5.85491682902425	5.6690466724484	5.84066887604458	5.73378791758018	5.85900274946473	0.200946316474994	0.526212348937276	0.849338088345222
Merged-chr15-100039117-2	chr15	100038617	100039617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	CpG	453.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	9.03897722132288	8.90806389723573	8.46922045589841	8.70059466095951	8.74647308379259	8.57408156827938	-0.215031440822602	0.362695043021892	0.748194541845863
Merged-chr12-69986474-4	chr12	69986000	69987000	+	884.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 1 of 4)	CpG	502.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	7.32493256839668	7.04274659543164	7.22876997897061	7.44805008972028	7.05713370052685	7.27465939178687	0.0948673780483723	0.710374928937447	0.924293540432205
Merged-chr7-141022293-4	chr7	141021805	141022805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5413.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	6.66510765470183	6.36528634472908	6.87071689520976	6.4688818863066	6.73182529840044	7.06932449441345	0.206406502297278	0.499414262711138	0.834486707618126
Merged-chr13-5802400-4	chr13	5801864	5802864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55728.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.69250721907991	8.06040743827413	7.59455076114561	7.35588279733122	7.47095055419798	7.46056180700027	-0.544737630050972	0.0270817975025321	0.195979372460218
Merged-chr14-22759799-4	chr14	22759281	22760281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-216983.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	4.27562695044822	4.33266986907165	3.87208528162158	3.83440622325649	4.15548897218892	4.53342367521147	0.0539517974201421	0.921709015190209	0.982542868764899
Merged-chr17-36958585-4	chr17	36958103	36959103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029602)	promoter-TSS (NM_029602)	11.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	7.78240938434222	8.08070409274	7.47897598381586	7.94828294717382	8.17326268990385	7.7069028008943	0.214941239365346	0.424427160936981	0.792697196836987
Merged-chr3-109352525-3	chr3	109352013	109353013	+	966.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	MIRc|SINE|MIR	11830.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.37844546008318	4.25080784714899	4.34153727134037	3.86552526968006	3.76078137641896	3.60154348545139	-1.72515302740615	0.00103646261624016	0.0185148092254426
Merged-chr14-50926724-4	chr14	50926237	50927237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310505)	TTS (NM_001310505)	1788.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	5.44030353657247	5.70402801558206	6.0486665035879	5.99312707664154	6.35599645464797	5.82858395880729	0.606638089700401	0.0840294343204226	0.383661081936741
Merged-chr3-20025714-3	chr3	20025206	20026206	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	9604.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	4.73257232399851	4.68466846297003	4.97622841351151	4.45547926338064	4.51873881326163	4.79950855261453	-0.484208117419973	0.250296328159968	0.647595052037769
Merged-chr17-87406422-2	chr17	87405922	87406922	+	654.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	MTC|LTR|ERVL-MaLR	21319.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	4.66387341953308	4.86380199566112	4.78611173638805	4.40277620774501	4.50163390441134	4.40029944353381	-0.807696397758834	0.0544504651503777	0.29969005848873
Merged-chr12-73324703-5	chr12	73324216	73325216	+	887.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	37868.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	3.64018330849404	3.92896053405676	3.88616732910074	3.8647846527049	3.58083240187189	4.00189430354629	-0.015466906063448	0.97763412632551	0.994887548257726
Merged-chr19-46002454-4	chr19	46001956	46002956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152221, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	-1022.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	5.08098051914547	5.13650126836177	5.24157935067759	4.88716293004241	4.96609588487842	4.97417661804091	-0.442292861623148	0.227294743809306	0.622402368069924
Merged-chr11-51821002-4	chr11	51820486	51821486	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	36495.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.36584323918889	3.20117258071688	3.2254089231847	3.25325850480783	3.03197924873633	3.29726034841213	-0.311575203986132	0.625577819303469	0.892513881101067
Merged-chr8-122430083-1	chr8	122429583	122430583	+	1000.0	f0_c57.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2857.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	8.5311087600278	8.25284431113828	8.03223945527688	8.41003224802089	8.52702680422948	8.05010016146678	0.079644209061399	0.753350493322228	0.938549578325581
Merged-chr5-118155384-4	chr5	118154777	118155777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172721, exon 1 of 11)	exon (NM_172721, exon 1 of 11)	181.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	4.6237129503231	4.3218736395001	4.70632719330203	4.81144641207333	4.27647810438664	4.44712251045927	-0.0614273947493552	0.895235688957615	0.975665889379756
Merged-chr9-106429874-1	chr9	106429374	106430374	+	998.0	f0_balb.idr	5' UTR (NM_001324534, exon 1 of 3)	5' UTR (NM_001324534, exon 1 of 3)	463.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	7.28407750119061	7.43176425486477	7.10907974265328	7.26034770224148	7.32111860222081	7.20437871162787	-0.0348493991779938	0.884540089682835	0.973510728214101
Merged-chr9-107579561-4	chr9	107579043	107580043	+	884.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008317, exon 4 of 4)	3' UTR (NM_008317, exon 4 of 4)	-1126.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	3.92553760647521	3.88059906976081	4.16897293290006	4.20224451267983	4.18587470408706	4.14575019986032	0.555134233059249	0.252206270246258	0.64970951645701
Merged-chr12-102705267-4	chr12	102704791	102705791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	-422.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	6.35257216112278	6.31241654865816	6.13672461813723	6.45975139649296	5.94254015212654	6.19745440308667	-0.104816700049536	0.731613614539509	0.931479001094019
Merged-chr10-59267201-2	chr10	59266701	59267701	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	45279.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.57447139086617	5.85017958592981	5.81100103676465	6.15459444667261	6.15234725998691	6.06233263021652	0.662017631248851	0.0278308105513653	0.199152570034228
Merged-chr9-65909728-3	chr9	65909229	65910229	+	864.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	719.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	5.34655787696571	4.8753723661741	5.55700857624813	5.32027273334907	5.13245513082248	5.40074577552428	0.00555182591654165	0.988756164899367	0.997426973334006
Merged-chr10-99303097-3	chr10	99302600	99303600	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	39869.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.20029289782287	5.42992358735008	4.85049207141921	5.20343890656829	4.94610636089722	4.87738070235011	-0.365586854636605	0.362284776445408	0.747810564820261
Merged-chr7-24531626-7	chr7	24531112	24532112	+	956.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153134, exon 2 of 3)	exon (NM_153134, exon 2 of 3)	964.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	5.96438397520603	5.6531680431338	5.87936021237381	5.81964422293662	5.64880561053055	5.65897831449358	-0.226309575537031	0.47545872510951	0.821964422075422
Merged-chr1-152556844-4	chr1	152556339	152557339	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	68378.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.23766350132993	5.78118613225612	6.18381019761317	5.88125961347386	5.929957984268	6.33862504962733	-0.0394078613084554	0.904849071448447	0.978165789675139
Merged-chr11-70795700-4	chr11	70795201	70796201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 3 of 4)	MTB|LTR|ERVL-MaLR	16860.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	5.75702794633815	5.49276533295903	6.045525738379	5.79129864674516	6.20461439359491	6.04146761331409	0.450590224936621	0.181980959234855	0.564609853313466
Merged-chr14-48131779-4	chr14	48131263	48132263	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10894.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	4.88710968595379	5.36446967269897	4.94850629496914	4.07084892574543	3.71232290860841	4.47235822396899	-2.51727443503022	1.81944500793205e-06	9.1392327573768e-05
Merged-chr4-46550179-3	chr4	46549684	46550684	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 3 of 11)	intron (NM_001164804, intron 3 of 11)	-14043.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	3.09136535107766	2.63946132669048	3.01322986121448	2.81876512635555	2.7822062041497	3.02784289376431	-0.248095030000472	0.7404016569755	0.934528157499283
Merged-chr13-105291995-4	chr13	105291486	105292486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	1028.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.58068476957807	6.59870412368999	6.6468326806763	6.55210585090428	6.65124130289875	6.64047083182596	0.0141642063557719	0.95563497319475	0.989763164889919
Merged-chr13-64107824-3	chr13	64107317	64108317	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 7 of 11)	intron (NM_001001321, intron 7 of 11)	-18616.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	3.57246977857666	3.55399572447892	3.69746399622834	4.68716308280893	4.87623260563431	4.3101605118943	3.23236523476326	7.00450826331512e-09	6.60057897592213e-07
Merged-chr6-96116835-3	chr6	96116382	96117382	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3728.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	4.73461966958789	5.0738061792966	4.87573213609183	4.51364336056775	4.40369235007354	4.2093908871852	-1.23771701632282	0.00478030477070603	0.0593256871013231
Merged-chr16-17686785-3	chr16	17686306	17687306	+	898.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	36094.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	3.89395754978148	3.84425239724441	4.25839782285571	3.74899364807849	3.87626659204842	3.87642988098792	-0.51051536636181	0.333737154875389	0.724581896487186
Merged-chr2-30474277-4	chr2	30473779	30474779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030244)	promoter-TSS (NM_030244)	-80.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	4.11854198789961	3.7283528814493	3.86174165692375	3.79250687831352	3.95228979113016	4.07606526180423	0.0793976727567418	0.880744680955329	0.972620420089863
Merged-chr10-19594569-5	chr10	19594024	19595024	+	863.176208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	2575.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.66772454177205	5.94922370239419	5.81132842744145	5.99556027074505	6.07752044590471	6.10533130568525	0.425211749928814	0.157992171300443	0.529527616804567
Merged-chr17-50390335-4	chr17	50389849	50390849	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-96729.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.64990691104343	4.74511383944224	4.64755753626015	5.68611253228995	5.72895318150672	5.32630975322922	1.90476815076459	4.46612914386193e-07	2.65820939772864e-05
Merged-chr19-46041416-2	chr19	46040929	46041929	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	ID_B1|SINE|B4	-1808.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	4.23458790192349	4.02669786666728	4.24730223052236	4.23491932393776	3.9338387259087	4.13332256417471	-0.194001975806948	0.690419209263062	0.917823389001164
Merged-chr8-33660748-4	chr8	33660235	33661235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	7497.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.67345835666432	5.70412256219041	5.76293272136924	6.87656858180983	7.12825113732864	7.25158188810374	2.26095289710367	1.34286719604577e-15	4.1384182832806e-13
Merged-chr19-3083602-2	chr19	3083102	3084102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	114101.0	NR_045304	70011.0	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	5.78960775298883	6.06508350694458	5.53388343082138	5.77480448982756	5.77161306120326	5.3008432952908	-0.32368604657712	0.367191009554996	0.752113401392775
Merged-chr8-34158405-4	chr8	34157910	34158910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	3847.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	7.0245698737263	7.06026157663209	6.41478799042766	7.07364073218401	7.33397099852744	7.08163359463003	0.445507153373295	0.128756422129183	0.479799601167289
Merged-chr6-72397025-2	chr6	72396525	72397525	+	636.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	3.84585769017676	3.75045155954928	3.67022841900422	3.8901628413361	3.60146720757505	4.07915521324537	0.326846756386587	0.554366764236	0.862781492566009
Merged-chr12-111150082-2	chr12	111149582	111150582	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16288.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	3.16848191486924	3.19201945671361	3.04050633549934	3.10838032280347	3.14494161777857	3.23067636774603	0.0879989455308546	0.89091301888997	0.974626818945276
Merged-chr4-149763530-4	chr4	149763030	149764030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	URR1B|DNA|hAT-Charlie	10737.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.94547967316386	3.79949859976875	3.77921427091779	4.25514898734389	4.2301228875361	4.2017962860505	1.12771047697872	0.0223571468512395	0.17369686976638
Merged-chr2-27028048-4	chr2	27027531	27028531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-33.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	7.52671139944609	7.45790413113384	7.36529746756843	7.60475895217603	7.90687044693812	7.48734466685549	0.339262804366827	0.161951818274069	0.535193761745733
Merged-chr17-35785029-1	chr17	35784529	35785529	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	12579.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	2.50924119037992	2.64815737037991	2.65854267039366	2.87155923179862	2.53832104672234	2.91477820784501	0.942583477766072	0.22626405752566	0.621188455146995
Merged-chr7-28379246-5	chr7	28378730	28379730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011756)	promoter-TSS (NM_011756)	-2.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	7.79679150181621	7.5339112820361	7.58499908576586	7.73542711847333	7.80606487541668	7.3442651772057	0.0112774702911952	0.964040536015687	0.991274561407747
Merged-chr3-31342754-4	chr3	31342256	31343256	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32437.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.35198921072432	3.33804898470834	3.24147247693588	3.14456976836785	3.28354277135523	3.13504741575131	-0.49300418210993	0.433426124717181	0.797815674529737
Merged-chr4-133774961-7	chr4	133774578	133775578	+	999.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21467.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.02379417490007	6.74642956849424	6.81967135436698	7.5900842721235	7.83411512499018	7.37640421135569	1.11910961223821	1.56138823698393e-05	0.000588405762785139
Merged-chr11-60218980-2	chr11	60218480	60219480	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	MIR|SINE|MIR	1647.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	3.19142722446492	2.97363715815253	3.00782623008819	2.93027638095638	3.01422263977553	3.08029598431942	-0.251538793288482	0.708296841178565	0.923674318414978
Merged-chr15-38371868-4	chr15	38371379	38372379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71168.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.96621360226101	5.63971767065831	5.88616621257886	5.56041144307269	5.62383322331501	5.46586068259638	-0.508873986808687	0.116825445860451	0.456418992354044
Merged-chr7-7136755-4	chr7	7136269	7137269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029584)	promoter-TSS (NM_029584)	-14.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	4.26619023560453	4.47792319306646	4.61229543429522	4.61702851999221	4.24607387138773	4.43425623438468	-0.0410539424188862	0.928255328834206	0.983802612059568
Merged-chr5-30898323-2	chr5	30897823	30898823	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8989.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	5.10625767202481	4.52050599267983	4.81158021829235	4.81335277399629	4.66219575493363	5.01885192898484	-0.0147600642066385	0.972844129505885	0.993897323428832
Merged-chr11-94551085-2	chr11	94550585	94551585	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1878.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	2.27937502676072	2.24119663095538	2.48929404173584	2.08083761053263	1.94568837982616	2.56342784247011	-0.562654068728817	0.730036157158796	1
Merged-chr4-19712479-3	chr4	19711994	19712994	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3490.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	3.27434369699812	3.33295132001419	3.34647960363539	3.1302158727773	2.96682538990749	3.00844705182764	-1.24008101517423	0.0580571979624227	0.311325697892959
Merged-chr15-100153247-4	chr15	100152783	100153783	+	957.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1113.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.21035595392641	5.37285132026896	4.87846086528874	4.93152494496829	5.45573193406792	4.94588066463174	-0.0600440951937566	0.88516875458699	0.973549591486895
Merged-chr9-44094913-4	chr9	44094408	44095408	+	895.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-6862.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	3.76113303218052	3.68581991791975	3.82814289818867	3.53190712103393	3.13634405335912	3.70112612010959	-1.0237093215829	0.100159394301501	0.422063348578917
Merged-chr17-23726888-3	chr17	23726385	23727385	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023058, intron 1 of 7)	intron (NM_023058, intron 1 of 7)	549.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	4.39513078401876	4.13677740198232	4.3736095020682	5.2993006979632	5.09666048494509	4.7941413145065	1.85231726513382	2.05788945778822e-05	0.000747741772941668
Merged-chr4-56114097-4	chr4	56113611	56114611	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-581636.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.14526385854199	4.44334377551116	4.51630596696364	4.4385855671774	4.08887600977869	4.83468565816502	0.266744344043412	0.596202098838755	0.8798867145239
Merged-chr18-78140476-2	chr18	78139976	78140976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	1643.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	4.21464980785019	3.91536928657702	4.37056619063353	4.43617182153084	4.44296264838178	4.51947521291922	0.782919526821076	0.0959672459281726	0.412951471230873
Merged-chr9-102834888-4	chr9	102834405	102835405	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013649)	promoter-TSS (NM_013649)	-15.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	3.88012863743917	3.90890913484293	4.04606374334067	3.80788433924595	3.28425526833776	3.7798151175051	-0.99952803701573	0.0912015514500325	0.401858647164494
Merged-chr13-60840377-4	chr13	60839904	60840904	+	950.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24012.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	4.26567300750641	4.33986594939164	4.19380488902179	3.9781748442087	4.50247666477528	4.67423891536706	0.375367724129911	0.451683653731139	0.809233899859178
Merged-chr11-6415773-4	chr11	6415281	6416281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-89.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	8.04783511464256	7.66835803449971	7.53637568932609	7.80677910961056	7.61307248795466	7.83798304550779	-0.0336301314668361	0.893610395086133	0.975265071347118
Merged-chr6-115367459-4	chr6	115366972	115367972	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	5123.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.19896164249891	4.73043535629924	4.68589321938466	4.70134068399987	4.96182011103295	4.57979090775085	-0.296811369777521	0.498164630459876	0.833856267944725
Merged-chr17-37272211-3	chr17	37271735	37272735	+	731.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 3 of 7)	intron (NM_013819, intron 3 of 7)	2001.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	5.04495269798101	4.90895750377983	5.27470474012841	5.61568627467362	5.37331228926728	5.39930725279091	0.793818465924736	0.027441542148204	0.19745446785355
Merged-chr15-95808074-4	chr15	95807567	95808567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	17224.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.43418831689497	6.20453807693199	6.45970431553738	6.17614695818166	6.1210497739386	6.01249859023551	-0.430310305706174	0.13070210859863	0.483186228268893
Merged-chr1-86472447-2	chr1	86471947	86472947	+	847.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46118.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.54787807150119	4.74707151959834	4.86229165173282	4.61151462079048	4.32991418184327	4.27107910482881	-0.746420721774733	0.0916515104202164	0.403094184631607
Merged-chr12-69157636-4	chr12	69157126	69158126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009093)	TTS (NM_009093)	1560.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	6.47923392209807	6.6125370908351	6.43666550053615	6.40801056494473	6.52707247076618	6.36253518045834	-0.122197350853152	0.647404067535674	0.901387590337291
Merged-chr15-57773384-2	chr15	57772884	57773884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	78717.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	3.33645554851841	3.31666737239737	3.41973214336031	3.80796296015049	3.77779726781766	3.65873076402457	1.45671874228878	0.010983279409175	0.107353073308896
Merged-chr8-104571185-4	chr8	104570673	104571673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20295.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	5.0689954132777	4.83068557645348	4.88221107988034	4.99739059267443	4.94829611518836	4.910315737266	0.0430115535602044	0.909876440180015	0.979671309970221
Merged-chr10-78105665-4	chr10	78105170	78106170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	36302.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	6.09100844902353	6.2600368007287	6.19678035190316	6.38484126028961	6.70063031277105	6.29884210050434	0.49525004356944	0.0868081325537899	0.390355117463021
Merged-chr11-49202383-2	chr11	49201883	49202883	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1117.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	7.21479289594037	7.12877388166362	7.09047184443875	7.30037167664247	7.40338364385888	6.95502956343141	0.144839052175551	0.567739857233452	0.868295740188235
Merged-chr8-90856578-1	chr8	90856078	90857078	+	559.0	f0_balb.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	27743.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.85329314107475	3.75545857025752	3.92817164906096	3.54758598930563	3.48525945444722	3.90294243324366	-0.657515369987633	0.239679502673469	0.63661666643112
Merged-chr7-81327211-2	chr7	81326711	81327711	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 19 of 21)	intron (NM_008803, intron 19 of 21)	18023.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	2.79780496886959	2.899233595129	3.23519244127902	3.01158007225428	2.74814928960279	3.45772279836993	0.500274568694392	0.512432344997904	0.84194203666026
Merged-chr7-80208942-3	chr7	80208481	80209481	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	10540.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.53686044794189	5.54616262121871	5.00842013035832	5.25524160974807	5.03776221493286	4.95785177145107	-0.619647876363245	0.108954860848706	0.441063868269437
Merged-chr2-155363624-2	chr2	155363121	155364121	+	725.083374	f0_balb.idr|f1_c57bl6.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-6197.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	3.34097914740855	3.52866222970178	3.55795886297608	3.54232340195175	3.37968013233395	3.72858998432811	0.264991254889053	0.652627025319417	0.902986290245403
Merged-chr19-10698513-3	chr19	10698012	10699012	+	773.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2256.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	4.4792211743526	4.7592151382031	4.54995458888906	4.69607794573716	4.39930427500486	5.08107224205897	0.325551360304061	0.477447099345858	0.823237639056184
Merged-chr7-25787771-2	chr7	25787271	25788271	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 1 of 19)	intron (NM_009465, intron 1 of 19)	962.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	7.5178921930492	7.51358201415594	7.36408039354487	7.97701399121768	7.88379267642729	7.07598644360905	0.356398820708736	0.234110606188273	0.63036877369004
Merged-chr16-16574676-4	chr16	16574160	16575160	+	981.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14441.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	5.74433362208431	5.59084647305985	5.73622883444606	5.57674042137018	5.83293848858614	5.8715346429966	0.139423458759719	0.660524897041036	0.905981809862142
Merged-chr7-45873352-5	chr7	45872879	45873879	+	862.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133950, intron 1 of 4)	intron (NM_133950, intron 1 of 4)	539.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	6.612088969124	6.71311911447995	7.04660157623132	6.88119341931736	6.71874874056111	6.96337026526096	0.0907883235404661	0.737768226166488	0.933858424870961
Merged-chr18-38428447-2	chr18	38427947	38428947	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	9540.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.83791445427535	3.69109802037894	3.82794163104739	4.19915208458981	3.95198661402345	4.18530532525678	0.996770981366469	0.0511261291796341	0.288198831839238
Merged-chr6-42341435-2	chr6	42340935	42341935	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-8393.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	3.83098018037148	3.90614085659485	3.99889905158355	3.48895350345423	3.75320359085257	3.72540179840895	-0.805283314718928	0.139129517900675	0.498350793176039
Merged-chr4-132800210-5	chr4	132799744	132800744	+	691.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3880.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.52371460296215	4.65910036869917	4.83385316282175	4.68749910208682	4.93505738089357	4.78786961461223	0.331626911542008	0.417162771744648	0.787800547226088
Merged-chr16-43967000-2	chr16	43966467	43967467	+	646.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12083.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	4.43538597151082	4.78590019640033	4.61597347891604	4.43694242691953	4.0807917140972	4.68173879211908	-0.5243618458686	0.26895404878638	0.666124791386388
Merged-chr9-119981820-8	chr9	119981292	119982292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	1231.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	6.60881382595542	6.66538023492712	6.31388360336899	6.96433453174649	6.91702233710272	7.04130491975334	0.658114092313447	0.0126278284203386	0.118379489319461
Merged-chr9-106437876-4	chr9	106437365	106438365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025371, intron 1 of 14)	MIRb|SINE|MIR	371.0	NM_001276442	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	5.78957062499267	5.52485957422751	5.90541213584894	5.72079616395323	5.64068270548074	5.80036980378595	-0.043732467994632	0.892103867408948	0.974942585822634
Merged-chr7-16313041-6	chr7	16312524	16313524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 2 of 3)	intron (NM_133234, intron 2 of 3)	3441.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	8.36506648044867	8.12803904369114	8.11041747629428	8.34450521825909	8.62860621322177	8.0646467424712	0.232023321696459	0.345257362803388	0.733669653925664
Merged-chr13-3610612-2	chr13	3610112	3611112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360838, intron 1 of 19)	CpG	496.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	8.36683509496785	8.50580534253624	8.36038051595844	8.49290595036863	8.60373930449425	8.47850177828174	0.158378524117027	0.435029090468802	0.798753078814766
Merged-chr10-98907385-3	chr10	98906928	98907928	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7214.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.09124984332025	4.20221064960892	4.35493596034725	4.66245897311976	4.33303567193907	4.50678295044303	0.760967769200098	0.096336083166583	0.413768275854284
Merged-chr11-76457074-3	chr11	76456578	76457578	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	11387.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.55215936433758	3.38451120766032	3.53740400262282	3.52279892025346	3.31446023452302	3.60751346310185	-0.0430343787856109	0.941620487428208	0.987024728112131
Merged-chr7-25755097-8	chr7	25754604	25755604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360789)	promoter-TSS (NM_001360789)	-345.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	7.35968950598687	7.64962203452844	7.29625520264925	7.71163389497696	7.76905703550877	7.35361359846832	0.264408239269956	0.300444372137907	0.697298854445564
Merged-chr16-4752844-2	chr16	4752344	4753344	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	PB1D7|SINE|Alu	-4102.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.56917220917521	4.65922779838163	4.88636056355198	4.72314019972515	4.4597846664215	4.95035661085456	0.0236489292681753	0.95628341682543	0.989842021063236
Merged-chr14-61680944-2	chr14	61680444	61681444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1429.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.34418416492366	8.55404455381655	8.02609837853964	8.15915027089658	8.57075659719602	8.32047532924218	0.0453091393085161	0.856403277915047	0.966511724796575
Merged-chr17-34125349-2	chr17	34124846	34125846	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-172.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	4.85551000545925	4.56677172753288	4.9045400682044	4.87205329633906	5.00879743875562	4.5715110334761	0.145030816195475	0.730414149607825	0.930884711548651
Merged-chr19-6923440-2	chr19	6922940	6923940	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039494, intron 3 of 4)	intron (NM_001039494, intron 3 of 4)	-1632.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	2.90261965064926	2.76357971966024	2.93222417038055	2.74131770076621	2.56289019993972	2.88720106818688	-0.708601148580525	0.342021917602476	0.731142095278512
Merged-chr18-54860856-2	chr18	54860356	54861356	+	710.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129324.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	1.81365471755769	1.7860608488378	2.01300616598635	1.69038518809224	1.72195730190287	1.82232366654012	-1.16429690262467	0.256792313669453	1
Merged-chr15-31225078-4	chr15	31224617	31225617	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146057, intron 1 of 3)	intron (NM_146057, intron 1 of 3)	732.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	6.13313769164385	6.0519275264205	5.99320510023105	5.97966616278593	5.84611030706382	5.78171557242265	-0.330989176348652	0.261936577006186	0.659781397939417
Merged-chr4-63745302-4	chr4	63744815	63745815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177371)	promoter-TSS (NM_177371)	-202.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	3.61461514179239	3.76392138884238	3.49734703111839	3.58794396317542	3.42584233014664	3.56897628589024	-0.392834112601575	0.491248571796013	0.830448151501811
Merged-chr2-91139149-2	chr2	91138649	91139649	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	21005.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	4.22653871929057	4.27212842014663	4.2179197642195	4.09247911406973	4.08088212722947	4.04914269614755	-0.466397698618741	0.318198417856761	0.711948531905277
Merged-chr2-30806921-2	chr2	30806421	30807421	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	4.09459435274188	4.02988016532147	3.61205627445953	3.76813887356663	3.75905798613127	4.04994379813373	-0.239919990028376	0.665173446359028	0.907762144972922
Merged-chr9-45271409-2	chr9	45270909	45271909	+	760.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	4.29960049568497	4.27841379979375	4.49478493270615	4.47506567934614	4.3465744959044	4.39390503412425	0.134232570669544	0.76135927640829	0.941255221326513
Merged-chr11-120576283-2	chr11	120575783	120576783	+	597.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133796)	TTS (NM_133796)	-3030.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	3.84165687623267	3.5674635033058	4.41680983762608	3.96388333974897	3.57992993339139	4.40797840120887	0.107256954233686	0.866185978497218	0.968796329038195
Merged-chr7-27541654-2	chr7	27541154	27542154	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 6 of 13)	intron (NM_001317355, intron 6 of 13)	11564.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	2.86911660918087	2.96464113958643	2.78449919111379	2.88166952419286	2.94762531807624	3.03968981703644	0.370733442289844	0.59482156880478	0.87924603206665
Merged-chr6-49107332-4	chr6	49106826	49107826	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 8 of 14)	intron (NM_023670, intron 8 of 14)	33531.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	3.68297875470122	3.0699463119713	3.15862096957214	3.47876771431598	3.45744296988759	3.4144408309066	0.409396054741366	0.545801250435889	0.85834429351586
Merged-chr11-110967354-3	chr11	110966798	110967798	+	867.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-735.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	6.60171647964299	6.58877140390923	6.37787117355949	6.23220748043795	6.25232051364536	6.19313023195331	-0.500535114405837	0.0653284620969493	0.333242439563693
Merged-chr13-23542697-3	chr13	23542165	23543165	+	784.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178197)	TTS (NM_178197)	779.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	5.14510520425172	4.87246085644421	5.09055766667566	5.60359562036833	5.49011555924312	5.63713144656113	1.06895831164466	0.00233248357349178	0.0347427948348366
Merged-chr19-5880872-2	chr19	5880372	5881372	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	3050.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	3.00476315096838	3.33902730779766	3.79607998483787	3.26826079277703	3.26416221993099	3.90734387016038	0.331266228161175	0.649978954398843	0.902467704262052
Merged-chr3-69158202-1	chr3	69157702	69158702	+	944.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	26969.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	4.78164221073146	4.6352821121475	4.7160343543975	4.37016949696506	4.47166241860183	4.31505650258791	-0.781951192308783	0.066781195923663	0.337754057282771
Merged-chr3-109129920-4	chr3	109129459	109130459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	Lx8|LINE|L1	6810.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	3.71919956548369	4.07329557920991	4.00418758781635	4.32398467534146	3.95451083884967	3.81454386520859	0.328927261415083	0.54233435496966	0.857068480766623
Merged-chr6-129398481-6	chr6	129397994	129398994	+	922.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	1197.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	8.29079843602437	8.34112945657489	7.74228563606032	8.57920444266201	8.97027137321125	8.17524753613439	0.645512872021155	0.0284225362590736	0.201876431672641
Merged-chr7-46831447-4	chr7	46830968	46831968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14336.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	8.14752304484384	8.40173255773059	7.99067181204195	8.11113013555481	8.40547087126063	7.92889136646455	-0.0355655974746934	0.886607408988742	0.973794308941933
Merged-chr11-103131003-2	chr11	103130503	103131503	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	3.1584975106518	2.78932699552612	2.94136966277519	3.03887837365746	2.77158884818891	3.01473703640162	-0.140169030898792	0.845657746241235	0.963850894494439
Merged-chr12-3346768-2	chr12	3346268	3347268	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18364.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.86560024124175	3.79806366327236	4.29178082784864	4.17436219566108	4.04500061878051	4.62320180667167	0.84559962874324	0.11475679476857	0.452287011135996
Merged-chr9-96637367-4	chr9	96636875	96637875	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5872.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	4.23611335764023	4.25987240106126	4.51364488320196	4.31167190776534	4.28028524986163	4.50028545449124	0.0719024596012645	0.874104408675128	0.970607588403817
Merged-chr9-16363910-3	chr9	16363398	16364398	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	14333.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.58908831308253	2.6180526513678	2.59269608278569	2.74134015343622	2.79372110506217	2.79162158409704	0.97118574990824	0.191157072795765	1
Merged-chr12-51938142-4	chr12	51937645	51938645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177171, exon 13 of 36)	exon (NM_177171, exon 13 of 36)	33176.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	6.69130944756127	6.67749471080625	6.30309749426619	6.72701479824336	6.80690242403061	6.52129028353701	0.185484664746384	0.506520727935408	0.838470324751826
Merged-chr12-24651868-4	chr12	24651356	24652356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178357, intron 1 of 3)	CpG	485.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	7.83152308110212	8.05864358713447	7.77638967279611	7.74361503803786	7.56216978803661	7.5964066952934	-0.378422027879001	0.096825597970781	0.414778848638424
Merged-chr14-25479067-2	chr14	25478567	25479567	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	19882.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.29883923568361	3.1561030040758	3.54627808753189	3.35601673197988	3.42970928270337	3.40545948938898	0.244778843812026	0.690660223975462	0.917915728386653
Merged-chr18-20789636-3	chr18	20789124	20790124	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43220.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	2.89494820463444	3.17251951324256	3.09096858456263	3.06994071419415	2.80290163517675	2.92317906701176	-0.576567722139284	0.410571121018744	0.78346905949881
Merged-chr10-22303812-1	chr10	22303312	22304312	+	751.0	f1_balb.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-2908.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	4.85714532341823	4.92537381266848	5.21561691115594	3.92866725323573	4.09169528930803	4.31120065168055	-2.26860605055725	1.48855587666732e-06	7.68837724306233e-05
Merged-chr10-127622282-1	chr10	127621782	127622782	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-1134.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.49422640739493	6.98510009617443	7.22997467640925	7.2734720288099	7.33613028415481	7.2757810684543	0.0617389042999483	0.810835902454044	0.955096593239846
Merged-chr11-115670736-3	chr11	115670241	115671241	+	612.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28793.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.33717529329077	5.52885000046755	5.14155194826384	5.43896512487635	5.40216891753584	5.52340991929086	0.182821352362159	0.598907345060306	0.880846352059707
Merged-chr14-7976346-4	chr14	7975850	7976850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 5 of 7)	intron (NM_007870, intron 5 of 7)	17832.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	4.06633772105213	3.65426591279854	3.75336084989875	3.84889158568494	3.91963148427344	3.82422535868946	0.0812904328962967	0.8801494063436	0.972453482977537
Merged-chr13-48512976-2	chr13	48512476	48513476	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164575, intron 1 of 4)	intron (NM_001164575, intron 1 of 4)	434.0	NM_001164575	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	6.26208931281561	6.58555909789087	6.34347413670815	6.31807793139239	6.67393256870663	6.3839779110322	0.111034881144208	0.702547123280736	0.921908665861083
Merged-chr11-121078199-6	chr11	121077710	121078710	+	723.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145373, intron 1 of 5)	RLTR15|LTR|ERVK	2929.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	5.70569354573032	5.46896428345483	5.85229116654162	5.51236985218888	5.67692979222823	6.06483369039469	0.155091965183019	0.655630737751737	0.90429384180742
Merged-chr7-101537766-4	chr7	101537252	101538252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18050.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.32030035801247	7.32451690220714	7.07962366415132	6.91903927266019	7.3457520812302	7.13746680928448	-0.14964114260426	0.56263658710526	0.865755360453189
Merged-chr11-51616282-2	chr11	51615782	51616782	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3491.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	4.94111969244394	4.933797148852	5.16823563352924	4.94885702506642	5.11404348826467	5.03303980353785	0.0588817194985955	0.874680843242698	0.970754540400126
Merged-chr6-34939614-2	chr6	34939114	34940114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009292)	TTS (NM_009292)	18666.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	5.10636038750965	5.05172967219873	5.12923199224824	4.72655876501768	5.0476433883674	4.6697866276507	-0.547516030862433	0.167239578254495	0.542880306552643
Merged-chr4-117126796-2	chr4	117126333	117127333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175030)	promoter-TSS (NM_175030)	20.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	8.08576602008976	8.02833652436441	7.97486017268549	7.80108491082585	7.92653770844476	7.87592128052696	-0.231209521672303	0.272410898393316	0.669663338532819
Merged-chr7-144942363-5	chr7	144941819	144942819	+	830.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2394.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.24787378372994	6.28681278614341	6.44908154538322	6.34983261139583	6.87632586142107	6.27590850082881	0.35590537898698	0.24996008059835	0.647138297370985
Merged-chr2-25272444-4	chr2	25271942	25272942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	-24.0	NM_023464	68475.0	Mm.21444	NM_023464	ENSMUSG00000026966	Ssna1	1110003H09Rik|1190004J23Rik|AA934184|N14|NA14	SS nuclear autoantigen 1	protein-coding	6.27146354487634	6.38032632918085	6.49520980802708	6.31640891446183	6.30308605092305	6.39389327894085	-0.0734577787850896	0.786822828785819	0.948633687424624
Merged-chr13-9776062-4	chr13	9775554	9776554	+	941.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10733.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.41227391203624	6.66941849447687	6.19531643236893	6.62228176473555	6.91083539883516	6.96988997245587	0.615528144429258	0.0334867148673384	0.223416675713536
Merged-chr5-101947342-2	chr5	101946864	101947864	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	122557.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.96111953183535	3.89029216725134	4.06962751178138	4.32763185717718	4.17508025832314	4.44346566875882	0.97299907793958	0.0427098145501454	0.259155418149821
Merged-chr5-124476587-4	chr5	124476072	124477072	+	779.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	1663.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	7.01574046285271	6.39271621107736	6.5388689661992	7.18621384440506	7.08430003608489	6.95073056265784	0.607714367149322	0.0383994554604093	0.242589164828011
Merged-chr10-20952585-4	chr10	20952086	20953086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026203)	promoter-TSS (NM_026203)	39.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	7.17084297284758	6.96958278728087	6.79833644692356	6.81177216168733	7.20760444206339	6.8100182374467	-0.0416382659065204	0.879998532728959	0.972364498183256
Merged-chr3-75956283-4	chr3	75955781	75956781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175193, exon 1 of 15)	exon (NM_175193, exon 1 of 15)	668.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	6.08167641232075	6.28714969095886	6.4873584456487	6.08746526723884	6.05256120701524	6.33473630767173	-0.221641631278894	0.457334027496674	0.812230534452681
Merged-chr8-24419492-4	chr8	24418967	24419967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19479.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	6.37085971333832	6.29623716110591	5.75176949178325	5.95032858094765	6.20423359010277	5.6378878817452	-0.364555945726972	0.299958896816553	0.696691692569764
Merged-chr2-101763234-4	chr2	101762746	101763746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	34461.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.90914643720587	6.89293338846444	6.78045937075261	6.6873425305671	6.99029736323568	6.74504077614139	-0.0665335444843345	0.7963870537441	0.951430675491237
Merged-chr16-92783818-1	chr16	92783318	92784318	+	886.6666869999999	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	42256.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.19876918081346	3.13750244743713	3.2373573572882	2.83683487220858	2.86495401141087	2.96178619541523	-1.44996214046693	0.0349744184018773	0.229467624046429
Merged-chr3-100702960-2	chr3	100702460	100703460	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17487.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	2.69914802731395	2.77532428155035	2.63710147641346	2.82612766892788	2.66665058569174	2.83613954756369	0.354003765580432	0.630662416625736	1
Merged-chr17-35738030-4	chr17	35737528	35738528	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33429.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	2.49732435607641	2.42973181907829	2.64651637088318	2.86073295257127	2.71808617919107	2.9035630672035	1.75458102192516	0.0259264060277108	0.190893230046346
Merged-chr17-50580655-2	chr17	50580155	50581155	+	899.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	71108.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.52545069988985	5.93023727231529	5.54024764489191	5.63644137840902	5.40026412399633	5.25338863393258	-0.455609470747071	0.19853872143136	0.58685067390707
Merged-chr19-40999087-4	chr19	40998566	40999566	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4531.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	5.5780191369783	5.96694147536977	5.66320674791289	5.47850824166518	5.20085148771442	4.97221366862598	-0.973814506426513	0.00824140823910832	0.0878830061206876
Merged-chr3-108299356-2	chr3	108298856	108299856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	15292.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	3.87414398385711	3.57807720261708	3.76258562571394	3.3898769238954	3.32915995314959	3.57527555573156	-1.1417448116647	0.050513074991324	0.286138739456606
Merged-chr5-71593956-1	chr5	71593456	71594456	+	744.0	f0_balb.idr	intron (NM_001359050, intron 2 of 2)	intron (NM_001359050, intron 2 of 2)	-45751.0	NM_030052	78174.0	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	3.94868715792705	3.68203667046323	3.89007036140188	3.84514934772991	3.8787430353647	4.09914475463657	0.299125205247803	0.566429702716027	0.867376103345635
Merged-chr12-3744232-3	chr12	3743753	3744753	+	664.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-62727.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.31366863463423	5.31589103815564	5.39029448239177	5.28152752246015	5.29646566037562	5.30050538261331	-0.0886182647333563	0.793103145178358	0.950243729178677
Merged-chr9-7346107-4	chr9	7345697	7346697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	-1177.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.61917975078577	6.82174078521844	6.74276160406782	6.114075049402	6.15935661310729	6.38317065751109	-0.835756867079679	0.00215202111402764	0.0326285300393608
Merged-chr8-13673438-4	chr8	13672920	13673920	+	999.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	4167.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.78583251402482	6.69371284109238	6.86968206950571	6.90324177237062	6.65559096658375	6.68499102795387	-0.0439374969306215	0.864535662748843	0.968291113794295
Merged-chr5-20865319-3	chr5	20864863	20865863	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	16761.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	6.04725073036371	6.4475716601213	6.01043153479886	6.4376862617092	6.58256012587283	6.35482081408114	0.448297078879752	0.13479344754556	0.490730344393104
Merged-chr17-35090468-1	chr17	35089968	35090968	+	645.0	f1_c57bl6.idr	intron (NM_178592, intron 2 of 19)	intron (NM_178592, intron 2 of 19)	1177.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	5.29603160620965	4.90522323773258	4.8529848362239	4.98423867703445	5.58184021739896	4.92063053092291	0.357409776076887	0.408344844896867	0.781982251625038
Merged-chr18-77775504-2	chr18	77775004	77776004	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007505, intron 1 of 11)	B1F2|SINE|Alu	-1619.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	4.1171408892213	4.40198220362076	3.97635304622933	4.12393808217168	4.11430694121532	4.19411731656612	-0.127373783600495	0.79478133422051	0.950867819055357
Merged-chr19-36818951-3	chr19	36818443	36819443	+	942.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15289.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	5.19287789391553	5.12411149581316	4.70232485500764	5.30279359256421	5.23634495844961	5.19435480131461	0.427508836932899	0.266659530633555	0.664172509867066
Merged-chr11-61498916-3	chr11	61498436	61499436	+	929.822205	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-4670.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	6.26761138357687	6.47533034813163	6.42394601010623	6.54016541295169	6.69002938584666	6.24505590311822	0.205946084857262	0.471379608553709	0.819989431324337
Merged-chr6-47812699-2	chr6	47812217	47813217	+	626.0	f0_balb.idr|f1_balb.idr	intron (NM_009787, intron 1 of 9)	intron (NM_009787, intron 1 of 9)	795.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	5.7541893547888	6.00990032790146	5.97943667577176	5.64209086056571	5.85753564096834	5.24634306922986	-0.528328443832175	0.132794164251058	0.487669562823071
Merged-chr14-49172589-4	chr14	49172098	49173098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027492, intron 1 of 4)	CpG	352.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	6.25059636214843	5.97703674648848	6.15812061274539	6.42392185381098	5.76837367260203	5.97182654208854	-0.0816072354385099	0.806429218362359	0.954171808010888
Merged-chr7-75456293-3	chr7	75455764	75456764	+	869.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 1 of 36)	CpG	730.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.66409581553698	4.41600044690872	4.54427655893875	4.36928534924313	3.92742445705161	4.44691502853961	-0.750531844131222	0.11894059701575	0.461021248053436
Merged-chr2-144270655-4	chr2	144270159	144271159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289630)	promoter-TSS (NM_001289630)	-87.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	8.66495893765808	8.74185616322941	8.23170982955958	8.37836855710628	8.4265436991295	8.1353312463318	-0.344369868094679	0.153586906168627	0.522532447327076
Merged-chr7-105737365-4	chr7	105736833	105737833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	52.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	7.01211547588294	7.30245945166132	7.24153315269422	7.21992828676247	7.4396684253128	7.57712945834749	0.337463569979011	0.177227567165844	0.558200903889413
Merged-chr6-115037885-4	chr6	115037379	115038379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026894)	promoter-TSS (NM_026894)	-5.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	4.98090338029037	4.66347085250143	4.72679652945658	4.97712607099711	4.78666595427703	4.34012557266898	-0.143409204117909	0.749084387976463	0.937162075172416
Merged-chr11-83299006-4	chr11	83298508	83299508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134025)	promoter-TSS (NM_134025)	-31.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	8.9742404731442	9.02489726106619	8.43186750196654	8.64677366058107	8.73981924142664	8.32666316296506	-0.351693912929113	0.170490685328627	0.547846214064376
Merged-chr6-83636105-3	chr6	83635605	83636605	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20011.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.22451145033997	7.46678253911871	7.52509607944358	7.43133307280985	7.59315974229923	7.30780651618658	0.0703595239887132	0.771818716815752	0.943614978016208
Merged-chr5-124440223-1	chr5	124439723	124440723	+	1000.0	f0_c57.idr	intron (NM_001310725, intron 1 of 6)	CpG	293.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	6.45418346005461	6.31296657443933	6.52102478011246	6.70613606668454	6.89654593048145	6.64842718060755	0.534483587995634	0.0439643962209006	0.263786377325404
Merged-chr2-101175314-4	chr2	101174812	101175812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-449436.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	3.84581660962073	3.85439934452759	3.91951244077216	3.50228541937936	3.84942145632401	3.45194341947777	-0.806000766370685	0.165541680918086	0.540659896606039
Merged-chr9-121719509-2	chr9	121719009	121720009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010918, exon 2 of 17)	exon (NM_010918, exon 2 of 17)	328.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	8.65185245583997	8.39131986141779	8.09416510499686	8.34294709786336	7.99530053966916	7.98489720182983	-0.39879359829898	0.115493654609261	0.453686904575931
Merged-chr18-80204731-4	chr18	80204242	80205242	+	776.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2056.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	3.15459028094076	3.21078440020713	3.51409191852111	3.610793849437	3.40622559172104	3.82885748334542	1.22291287595623	0.0506929263350277	0.286780985254813
Merged-chr15-64050297-2	chr15	64049797	64050797	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	9467.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.45442281362684	4.54883875185265	4.70865041307582	4.57013056514797	4.40319228254086	4.53989698165577	-0.164309292757557	0.699950975008391	0.920780791926092
Merged-chr5-147911907-4	chr5	147911411	147912411	+	904.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17096.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	4.87853153163134	4.8580523849594	4.98322450307752	5.83516048631511	5.91862697526142	5.49023875322798	1.72407199060279	1.13539494875884e-06	6.05602198053371e-05
Merged-chr9-47652748-4	chr9	47652239	47653239	+	708.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	122387.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.55886898294307	6.80294631624082	6.74615615724202	6.49200681547887	6.63840843305684	6.54335507397971	-0.226921036059787	0.387715189634199	0.767721672469137
Merged-chr2-129592716-4	chr2	129592219	129593219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291021)	promoter-TSS (NM_001291021)	-120.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.44262897661331	8.4765829243354	8.28074921272645	8.23890413668978	8.45793071942634	8.15181534371408	-0.154586194062826	0.478087240263539	0.823616627077609
Merged-chr8-71366815-4	chr8	71366273	71367273	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-75.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	7.26883466033078	7.41643521268915	7.49191930044639	7.35522405748082	7.73106610069398	7.20426305603206	0.100549231969331	0.699370292409936	0.920603734905492
Merged-chr1-128014141-4	chr1	128013630	128014630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	B4|SINE|B4	88341.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	5.28507313011535	5.46393536827911	5.38705307233895	5.04720213538278	5.22684005213332	5.13061845250998	-0.482407358339933	0.169699408104482	0.546749335923399
Merged-chr4-108519026-4	chr4	108518530	108519530	+	652.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 15 of 30)	ORR1F|LTR|ERVL-MaLR	59604.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	3.19687846006985	3.2083000857737	3.43608624812425	3.49904296128999	3.33866155204034	3.45299198078883	0.596268650664251	0.326186331977929	0.718556399216867
Merged-chr1-55821318-3	chr1	55820806	55821806	+	881.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109935.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.53207207521522	3.60178494471647	3.61712317541595	3.34316086655645	3.2965397363234	3.36175328518224	-0.958287711384763	0.101693912761863	0.42549138095686
Merged-chr7-35106780-3	chr7	35106283	35107283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-12510.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.16575037291932	4.06080311987328	4.31219873935371	3.83757160605869	3.63967915291024	3.92996327568031	-1.16330932139028	0.0241184006447792	0.182639596000254
Merged-chr12-86803888-4	chr12	86803371	86804371	+	916.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	69502.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	3.6248477224486	3.19511028200894	3.50640432764245	3.78346712337992	3.35697436723556	3.63156308447695	0.519515421716186	0.405847448525751	0.780439975167702
Merged-chr18-75170652-2	chr18	75170152	75171152	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	126665.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.34499939592328	3.2330623625403	3.14551145297376	3.23270483073871	3.04075168075097	3.21815147662722	-0.359649530415702	0.574077600968169	0.870523174873875
Merged-chr10-78457268-3	chr10	78456725	78457725	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	7723.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	5.86121880755128	5.98304020476587	5.78282437454352	5.83417314183367	6.10314154833998	5.68142526548034	0.0282481798934915	0.92920445596251	0.983987942057929
Merged-chr2-167699660-2	chr2	167699160	167700160	+	599.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8483.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.79851857434864	6.17029412643313	6.11890925851221	5.88725906821035	6.06164412053429	5.72283517574525	-0.223427339231069	0.482617536798812	0.825745188393559
Merged-chr2-129913685-2	chr2	129913185	129914185	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98655.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	5.375359219961	5.27968174598411	5.06353898491229	3.78989643648076	3.89907599153326	4.22894545223288	-3.41303392077827	1.30696773642527e-11	2.0658801233736e-09
Merged-chr15-57761437-4	chr15	57760934	57761934	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	66767.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.44569974133075	4.48020146709798	4.192960435502	4.73483471305595	5.07561698971867	4.90907909685059	1.25208299470992	0.00407583566655641	0.0526863654097911
Merged-chr17-5211046-4	chr17	5210550	5211550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	207717.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	6.10095171618735	6.59204827847115	6.2628931878765	6.16806104357716	5.93401800806808	5.84092926345464	-0.588749221062707	0.0616516338259888	0.32212895137615
Merged-chr2-154662079-2	chr2	154661579	154662579	+	681.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	5053.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	3.49789790866405	3.63372873152482	3.6745660424275	3.84321986694624	4.14707275804534	3.63526444735656	0.990711798759937	0.0794909492751543	0.372809892037424
Merged-chr11-34048886-5	chr11	34048491	34049491	+	954.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2063.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.21959407011738	7.16909732708267	6.9857196350544	7.37974047389468	7.39087523207366	7.21406050261186	0.298680664704902	0.210608424910492	0.602769092283296
Merged-chr1-152015784-4	chr1	152015284	152016284	+	752.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	74536.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	2.6056844439726	2.64017597109011	2.90026878928514	2.80158254618931	2.75800407369002	2.8551145519224	0.463052636446222	0.529840399577746	0.851055038807203
Merged-chr10-44659716-4	chr10	44659201	44660201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200953.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.57525005917087	7.55473999361642	7.29897723169392	7.33723388806164	7.40459331054627	7.21289354676418	-0.24106593050157	0.309080113951124	0.704802606494279
Merged-chr13-65242579-3	chr13	65242121	65243121	+	928.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36233.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	3.54847942614278	3.49356265286428	3.81081236390309	4.86654816585959	4.47230616432592	3.88713770916908	2.57564651248805	1.31413140901087e-05	0.000506898213907235
Merged-chr11-118446665-2	chr11	118446165	118447165	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204130, intron 3 of 3)	intron (NM_001204130, intron 3 of 3)	3131.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	3.08407021829188	2.83742562628864	3.27066408346634	3.00357896249949	2.85183763816624	3.39267223889377	0.11054437099322	0.878914719718698	0.972057366895108
Merged-chr18-38228605-4	chr18	38228125	38229125	+	910.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-18863.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	5.17831324105908	5.01526771947673	4.90476600984287	5.11841043177847	5.22433545512609	4.81101136849892	0.0675150268450598	0.861796533408105	0.967996224966109
Merged-chr2-152709274-4	chr2	152708775	152709775	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159551)	TTS (NM_001159551)	22127.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	4.65819906414456	4.21440652129362	4.44744454165584	4.22155152151202	4.05518542918371	4.25224769922386	-0.749716177751656	0.114014644471442	0.450899740360255
Merged-chr1-92216894-4	chr1	92216406	92217406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36565.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	7.52947263467581	7.42850425574362	7.54291459796788	7.58138422079468	7.78202598216049	7.69242981442052	0.278276573015086	0.21260131508166	0.60512503641463
Merged-chr6-86659145-4	chr6	86658641	86659641	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10018.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.65851746285984	4.62803891037582	4.49000243178733	4.50248823699143	4.63604169506943	4.46983849402874	-0.133740477763951	0.75064741173677	0.937588367655538
Merged-chr14-34514297-2	chr14	34513797	34514797	+	956.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030062, intron 2 of 2)	intron (NM_030062, intron 2 of 2)	8504.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	2.77446188582818	2.99838176650906	2.79170088274093	2.93281176502664	2.99993610284832	3.048675424742	0.62309540289932	0.375947528881784	0.758951282467405
Merged-chr13-73458869-3	chr13	73458356	73459356	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8527.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.81198818139581	3.631087216273	3.46266588941804	3.3092104018787	3.43988958116814	3.53446736646619	-0.800039792323581	0.176394050277738	0.556636685964426
Merged-chr11-59528102-2	chr11	59527602	59528602	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13467.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	5.0659482369375	4.68969930219382	5.3175577184357	4.92266663333073	4.80269247876424	4.7846640808575	-0.43766430563378	0.292435484152021	0.689679830251773
Merged-chr10-80677966-4	chr10	80677478	80678478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1685.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	9.32658804403238	9.44724934991351	9.02264770869056	9.09243721048014	9.59833189006244	8.95880209787656	-0.0366148676451099	0.88712157890394	0.973818520404627
Merged-chr3-54719150-4	chr3	54718643	54719643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 20 of 24)	intron (NM_001358017, intron 20 of 24)	16221.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	3.57777645536808	3.67059122990925	3.76583724951382	3.72772483842875	3.75003840309874	3.83494351003531	0.334647132110432	0.530964335220256	0.851363932161699
Merged-chr19-5662817-1	chr19	5662317	5663317	+	545.0	f1_balb.idr	5' UTR (NM_011379, exon 2 of 17)	5' UTR (NM_011379, exon 2 of 17)	890.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	5.10645089822986	5.17405820722807	5.39462766193448	5.56675338032587	5.67043934579246	5.70346156762035	0.828410380569763	0.0137764645729866	0.125403354577078
Merged-chr2-140844234-4	chr2	140843737	140844737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-172761.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.55139367442647	3.38582291937152	3.42799057383561	3.32118850220617	3.67852291814044	3.55406433575678	0.265951742161922	0.655132009821076	0.904151934338327
Merged-chr13-119609759-2	chr13	119609259	119610259	+	907.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039244, exon 3 of 3)	3' UTR (NM_001039244, exon 3 of 3)	-14060.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.85505444446419	4.36099409876587	3.89341736726307	3.69339460598626	3.60542388769408	3.96344962061901	-0.961393675045522	0.0857690475710703	0.387862549472479
Merged-chr4-128689956-4	chr4	128689450	128690450	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	1212.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.10790506999658	4.02813101846669	4.04206012313678	3.97855566846402	4.04090418137803	4.01378609832346	-0.1416640473372	0.769415238510566	0.943125565788486
Merged-chr7-100493702-3	chr7	100493221	100494221	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 1 of 7)	intron (NM_011671, intron 1 of 7)	363.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	8.41414104368957	8.54175987412237	7.96964777922222	8.14032409560372	8.50032298457212	7.76697417351295	-0.219388712907027	0.442915750983334	0.803436014387
Merged-chr8-79448791-3	chr8	79448318	79449318	+	922.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-49350.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.43319523489615	4.21163800289164	4.36005070881129	4.18566194035551	4.2357184013194	4.38415834412918	-0.190442545256811	0.675947614909868	0.912421384593547
Merged-chr10-80142300-4	chr10	80141785	80142785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	10.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	6.9229726804132	6.84963165111451	6.7089798051664	6.72863912537494	6.8501384214108	6.79902729258862	-0.0634287629621267	0.800302615629962	0.952448512253924
Merged-chr1-152901571-2	chr1	152901071	152902071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	1074.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.70213324125824	4.52119785957248	4.47942026898017	4.52144097496461	4.3235931732483	4.74490237040984	-0.113525186279989	0.796415237580547	0.951430675491237
Merged-chr7-88270716-4	chr7	88270218	88271218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7367.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.57511757321997	7.37918298853006	7.19699980669937	7.23778139811483	7.52945590330324	7.3252605880314	-0.0363157235643989	0.884495631179475	0.973510728214101
Merged-chr6-97339685-1	chr6	97339185	97340185	+	668.0	f1_balb.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-86905.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.37424414274977	3.13304637211942	3.68449817789572	3.25597494238915	2.98019814138132	3.65903394614725	-0.328066833409318	0.641418099095773	0.898987959667852
Merged-chr5-34501785-4	chr5	34501304	34502304	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12175.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	6.09823839647049	5.75654863230668	5.51665990238805	6.11060926380953	6.09727805670137	5.9408516774319	0.400424336922199	0.223567495912394	0.618314305653078
Merged-chr1-179668216-4	chr1	179667736	179668736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178653)	promoter-TSS (NM_178653)	5.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	3.61235092524138	3.32480534576445	3.57316509035472	3.30006619287323	3.27996489604576	3.31625796035124	-0.810890984158105	0.18125674045114	0.563574247882485
Merged-chr18-69400805-4	chr18	69400317	69401317	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54657.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.48094427857158	6.84148588946377	6.31787160365673	6.46437494119716	6.90443563086517	6.3368427745503	0.0482983358118933	0.879278398295946	0.972083703102674
Merged-chr16-77268982-2	chr16	77268482	77269482	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60346.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.10183220474477	4.14318464503224	3.9863774078484	4.20655823567591	4.1746730917056	3.9531351058423	0.113025739077465	0.816151090686312	0.956616423430214
Merged-chr2-132602005-4	chr2	132601506	132602506	+	969.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3810.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	6.23268282495729	6.25821252415733	6.25156035400881	6.28827968029539	6.20949331748364	6.3115186704147	0.0321794263560206	0.905973155004931	0.978576016264467
Merged-chr2-45262140-4	chr2	45261624	45262624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144682.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.01505683020316	7.08710082124753	7.02274131841779	7.00903578099099	7.34073265069322	6.92705855818848	0.111341958749825	0.664617276111271	0.907708448846662
Merged-chr10-70244119-2	chr10	70243619	70244619	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1157.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	4.90975575788602	5.19822801011623	5.23345599564924	5.26977124931949	5.34605021531843	5.5560522615844	0.550158569306609	0.129819813392727	0.482001958807507
Merged-chr14-75284315-4	chr14	75283809	75284809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-57.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	7.08267925423068	7.54464338152875	7.5254489432083	7.46643948708479	7.22702876090965	7.2052003330965	-0.138063538559002	0.599190462715929	0.880924908462167
Merged-chr10-44665807-6	chr10	44665344	44666344	+	999.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207096.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.2654310232575	6.2233659880306	5.92821173846422	6.2113536785903	6.04662732934539	6.1075148349362	-0.0619385048374351	0.833091336124879	0.960934097095552
Merged-chr7-43361675-2	chr7	43361175	43362175	+	708.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	10334.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	3.77319916752197	3.88255317775677	4.09376613815064	3.97303571497385	3.93282369544137	4.20466855223509	0.360177152279713	0.480771546198449	0.824808536238026
Merged-chr10-87836645-1	chr10	87836145	87837145	+	540.0	f1_balb.idr	Intergenic	Intergenic	-21620.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.98256628067821	2.99279219588328	3.11738986571204	2.87053565392996	2.8768123455407	3.29619743448046	-0.0335615547341858	0.961681696537958	0.990660492306069
Merged-chr15-53344687-3	chr15	53344223	53345223	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010162, exon 1 of 11)	exon (NM_010162, exon 1 of 11)	1460.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.03716110724377	5.11540204189922	5.01987673584119	4.99421926827734	4.77776033124823	4.65666944883197	-0.52195533201348	0.17762985235319	0.558706727133464
Merged-chr10-79926992-4	chr10	79926499	79927499	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-44.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	6.52646434696753	6.71240012021297	6.93785625694912	6.79613853811338	7.16732650612588	6.88469161377846	0.368597813953981	0.181419081787642	0.56376927731879
Merged-chr8-122281484-4	chr8	122280994	122281994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-647.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.99728959859214	6.05517560433331	5.97662131481091	6.91394554231	6.63746938688384	6.20320734484799	1.01078116554039	0.00114779951660822	0.0200306422353055
Merged-chr1-191119104-4	chr1	191118578	191119578	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.63561491603819	7.34010669379852	7.17351166814268	6.68500325826043	6.91287373088571	6.49112417701628	-1.03468786336751	0.000204952442957702	0.00511663293316043
Merged-chr1-166429206-4	chr1	166428698	166429698	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19370.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	4.39810714552255	4.31386339341263	4.18970583906397	5.17052459118132	4.96168528852228	4.80437488487516	1.62263685083723	0.000173364529578672	0.00445913934379664
Merged-chr1-182504430-4	chr1	182503934	182504934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	13176.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.82639439214379	3.90618080333187	4.06401160927274	3.86205379878088	3.53090866270012	3.69058157653808	-0.754903404530586	0.164534274680417	0.539123991728306
Merged-chr8-85512457-3	chr8	85511953	85512953	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	19836.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.37779342953214	4.60011843719482	4.69340530277986	4.38227554439467	4.59533438260845	4.436997301972	-0.191350185638603	0.661829439527349	0.906495637422278
Merged-chr9-49486163-4	chr9	49485669	49486669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	56.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	6.846124594348	6.79669964787779	6.92797707698432	6.15438359975118	6.33600035671198	6.17012961676719	-1.00216144376601	0.000174156904196415	0.00447813587279831
Merged-chr7-105554347-4	chr7	105553842	105554842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011421)	promoter-TSS (NM_011421)	-18.0	NM_011421	20597.0	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	5.47973288179832	5.67204455561567	5.65345429753586	5.69096700252709	5.4943112268727	5.36497279416123	-0.139616504784758	0.674257939360767	0.911841916826811
Merged-chr12-35038790-4	chr12	35038292	35039292	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8397.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.82297784237263	7.05403751115398	6.68471131901613	6.70105816043145	7.02258144073568	6.9550207800833	0.0482147557070201	0.857599107688405	0.966767080388296
Merged-chr3-123798022-3	chr3	123797514	123798514	+	808.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107162.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	3.39032899097033	3.67710861225479	3.70999129410511	3.05705297798994	3.0982736878804	3.06028263540964	-2.209336359014	0.00111031517144797	0.0195177620337589
Merged-chr8-71923583-3	chr8	71923060	71924060	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133358, intron 1 of 3)	intron (NM_133358, intron 1 of 3)	735.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	7.18301813035711	7.86983541855019	7.6736596957553	7.55305013780695	7.4483943642086	7.39859591877826	-0.203826871195819	0.455399165663088	0.810916340573998
Merged-chr7-19697002-2	chr7	19696502	19697502	+	763.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1396.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	4.91179555922452	4.8443462956044	5.21596567761518	5.17902041061856	4.86481568013392	4.98312052359204	0.0503763875319383	0.897599411164073	0.976055448838318
Merged-chr19-53945506-4	chr19	53945033	53946033	+	827.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	657.0	NM_019658	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	5.70568812322961	5.13324342449263	5.52259278022785	5.65427790539975	5.17947590184284	5.88369000252856	0.226561374953158	0.56916661058378	0.8688875602138
Merged-chr2-90528302-4	chr2	90527794	90528794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-49120.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.45950173598971	6.20214349474317	6.28778373212919	6.76648555766296	6.62294001974776	6.28589739526342	0.421055938399771	0.146419477061043	0.510379617414239
Merged-chr5-72821315-2	chr5	72820815	72821815	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47133.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	4.00227736037043	4.15810031861813	4.35340145917266	3.83650573777176	3.37167671871454	3.8892447424584	-1.45166554763668	0.0117931703678417	0.112843390060645
Merged-chr2-59343013-4	chr2	59342508	59343508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	43674.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.82532566947973	5.72022612728495	5.64507603423442	5.33317981582628	5.45297243280424	5.90332109805492	-0.299652387627189	0.386552976132873	0.767131316757601
Merged-chr6-116050786-1	chr6	116050286	116051286	+	859.5	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-55781.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.03733867105239	4.94297778069291	4.78110211011268	4.88163950740813	4.52845014712866	4.45967710780037	-0.663739254730893	0.114067326744662	0.451007710546677
Merged-chr17-71294819-4	chr17	71294415	71295415	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	L2c|LINE|L2	16096.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.89132144077003	4.84370739785004	4.95424344985171	5.37932146331783	5.18634884396532	5.12594020351866	0.727516644327141	0.0474080809001959	0.275778215572113
Merged-chr11-60838700-2	chr11	60838200	60839200	+	851.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	8069.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	5.25564542699439	5.24964428108253	5.38474544120829	5.11816545618378	5.38305906574555	5.12919241833955	-0.133553893402604	0.707583750163362	0.92345356092026
Merged-chr5-31218695-2	chr5	31218195	31219195	+	778.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	B1_Mus2|SINE|Alu	1850.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	2.98739756904975	3.11261678568655	3.13224765024632	3.28153924256722	3.49397794317166	3.58793606069877	1.58813559804702	0.0138008776475876	0.125529610045929
Merged-chr4-8431167-2	chr4	8430686	8431686	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104458.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	3.00174590782191	2.86269805186585	2.98024922477118	2.7468546764392	2.86007705212068	3.10878204817443	-0.19165321608973	0.786611986295809	0.948530822116986
Merged-chr19-6062138-4	chr19	6061606	6062606	+	946.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028454)	TTS (NM_028454)	899.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	6.54304894734225	6.51237850088318	6.58902684000102	6.39815841179869	6.30700657065893	6.69545965614046	-0.13028791768594	0.635890085125365	0.896829421389054
Merged-chr3-96556783-2	chr3	96556283	96557283	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 3 of 3)	intron (NR_040409, intron 3 of 3)	-1174.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	6.63918048060262	6.42508063911518	6.47086142569751	6.90231074606128	7.01803986473413	6.97174735044888	0.702308861285928	0.00588380642646383	0.0688385496531499
Merged-chr10-18469418-1	chr10	18468918	18469918	+	780.5	f0_balb.idr	promoter-TSS (NM_001163592)	promoter-TSS (NM_001163592)	-563.0	NM_001163592	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	2.30342703831941	2.3302228140216	2.11106853095563	2.32488757213858	2.25629167990973	2.45452665905282	0.593408949339688	0.502547403993733	1
Merged-chr18-57879464-3	chr18	57879006	57880006	+	740.2023929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009194, exon 1 of 27)	exon (NM_009194, exon 1 of 27)	828.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	4.30465182464629	3.77365633444402	3.83182301146868	4.02242779920118	3.88076785865252	3.90309541542906	-0.189998598844956	0.725561579681589	0.929698613727862
Merged-chr17-10316744-2	chr17	10316244	10317244	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	2617.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	5.22806647259302	5.49529300268742	5.52532460819432	5.44733799670554	5.6352612732278	5.1430739121795	0.038478440597106	0.915616901520817	0.981141918864459
Merged-chr14-12289863-1	chr14	12289363	12290363	+	574.0	f0_balb.idr	intron (NM_001284385, intron 3 of 4)	intron (NM_001284385, intron 3 of 4)	5660.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	3.53169890148232	3.17664860251699	3.67447808136701	3.66365365576369	3.73014306178937	3.41842942715793	0.508022892408277	0.414885117703786	0.786104084570116
Merged-chr9-63132941-4	chr9	63132409	63133409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14071.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	7.99919890477459	8.28402569486688	7.53140284965745	7.70839645777761	7.82258099244412	7.26397322075497	-0.507795963736891	0.0847263320539853	0.38547093716192
Merged-chr7-126626016-4	chr7	126625497	126626497	+	782.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-527.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	5.46694070932504	5.25842315591438	5.71986976140954	5.76866078366064	5.64985721563502	5.67909384103955	0.407052899498525	0.226183593590864	0.621140322788657
Merged-chr7-133122240-7	chr7	133121797	133122797	+	854.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	CpG	1186.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	5.78651976764482	5.79419646580808	5.8457634994075	5.92206388770491	5.44306335668937	5.99871556831095	-0.0164899842945614	0.960885942123719	0.990386809359123
Merged-chr4-41306342-2	chr4	41305842	41306842	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	B1_Mus1|SINE|Alu	8559.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	4.27707165913892	4.44444462973823	4.45693895053194	4.63169025939048	3.96761182175331	4.52371886058206	0.0178731002321628	0.971313056950336	0.99372953538901
Merged-chr4-94603216-4	chr4	94602715	94603715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	32.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	8.46270767190489	8.97351091889076	8.37047793468839	8.44355699351833	8.69798186783043	8.42588007028129	-0.145752784915118	0.567322275234111	0.867922102830153
Merged-chr7-89980537-4	chr7	89980044	89981044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021876, exon 1 of 12)	5' UTR (NM_021876, exon 1 of 12)	432.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	8.2471796036463	8.25146962796883	8.15791993385198	8.20339093512012	8.50383290604287	8.27230566167573	0.162702181071578	0.449919297552261	0.808013574003465
Merged-chr18-61087102-4	chr18	61086626	61087626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18446.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.76699975809512	6.95003813791029	6.91247920698788	7.14556725995135	7.2519936951297	6.91301249874032	0.369202910862015	0.144354808538853	0.507146496154939
Merged-chr7-28338315-2	chr7	28337815	28338815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	CpG	404.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	6.55372428197627	6.90242899973333	6.7380783092017	6.9422186101934	6.74573658238858	6.94269417258085	0.208723199145705	0.430301743014712	0.796209952783757
Merged-chr3-113630100-4	chr3	113629520	113630520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026043, exon 1 of 15)	exon (NM_026043, exon 1 of 15)	129.0	NM_001287015	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	7.48375694378007	7.85385008682064	7.53273215206842	7.40388926973588	7.61084979809297	7.48876152133016	-0.192354425599596	0.428776058275904	0.795498170360422
Merged-chr4-88865392-4	chr4	88864896	88865896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14805.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	6.0882159908382	5.99623391195212	5.97081648470104	6.33671891535964	6.12330710774298	6.1882902799582	0.332121336729274	0.246051297878935	0.643182480464067
Merged-chr15-98511485-4	chr15	98510992	98511992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8342.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	8.19195595803641	8.32921984934898	8.17285887888061	8.23363868019114	8.55930319565516	8.05179219480592	0.101532840312378	0.667744124430307	0.908813236401378
Merged-chr11-51926406-4	chr11	51925896	51926896	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41235.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.92776498483408	7.30470280527746	6.99958209523168	7.10510505515856	7.46033910969338	6.88332949725398	0.137601763474037	0.627749196506698	0.893342827825027
Merged-chr10-70251396-4	chr10	70250923	70251923	+	908.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	6147.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	6.00718052069748	5.90051326122251	6.04714003725427	6.24072893647983	6.16734284319053	6.12983383763002	0.341308961540185	0.230431502531862	0.626271502694957
Merged-chr4-137603435-2	chr4	137602931	137603931	+	866.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	B1F1|SINE|Alu	9259.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	5.34797932369543	5.36900277395766	6.006188705433	5.79821762437133	5.81670424927538	6.20409170852254	0.628654311800701	0.0894473308001782	0.397369647689334
Merged-chr3-95888862-4	chr3	95888365	95889365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346514, exon 3 of 6)	exon (NM_001346514, exon 3 of 6)	3140.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	4.9879578764738	5.05463815102892	5.35737024720187	5.13225328112415	5.22830657912089	5.14116241330992	0.0832320708049802	0.820871920830407	0.957873852335066
Merged-chr6-113751907-3	chr6	113751405	113752405	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11224.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.97381696641573	6.73619886446317	7.06612428955051	7.04244778127674	7.08559101053967	6.95130093755447	0.160794352388238	0.523288951950283	0.848140307645003
Merged-chr19-4214421-7	chr19	4213882	4214882	+	873.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310039)	promoter-TSS (NM_001310039)	-7.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	7.03239149866548	7.23217848114499	7.09155282850069	7.00435941114788	6.60509547203869	6.5027737383621	-0.607451476340182	0.0268783424871297	0.195248824001486
Merged-chr11-107378355-4	chr11	107377859	107378859	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	92361.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.52362513119846	5.30090838928643	5.74404449521233	5.88814935254681	5.73317528231525	5.9469518127493	0.607292843176614	0.0664573373351415	0.336730125744882
Merged-chr15-79396948-4	chr15	79396477	79397477	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	5942.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	3.15393561271643	3.11537607983504	3.10890232337717	2.9061636965096	2.64576486375933	2.74779419884413	-1.84013068921602	0.0135501057999287	0.124007611460676
Merged-chr4-144928908-2	chr4	144928408	144929408	+	593.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001172424)	TTS (NM_001172424)	35771.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	2.72998227951765	2.72262157119749	3.12470034983895	2.66337961267932	2.70104182870153	3.03330705472908	-0.306710256787437	0.687809595432829	0.917193226920892
Merged-chr9-66916053-2	chr9	66915553	66916553	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	3652.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.16717652243939	6.10017198331192	6.10823913934065	6.33750621496402	6.54778760133199	6.66602253561046	0.650230212097309	0.0197741979097725	0.160242643131705
Merged-chr2-118901862-2	chr2	118901362	118902362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	CpG	247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	4.43889743839425	4.29103150187161	4.3643836819421	4.82166879253658	4.20755717864971	4.51932449659443	0.432014721327964	0.359535899754017	0.745797276919176
Merged-chr5-121592631-3	chr5	121592140	121593140	+	841.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	PB1D10|SINE|Alu	1184.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	6.49166781354714	6.7330441795813	6.31647732041588	6.4896765618046	6.6421106074306	6.35646746112255	-0.0405772432182828	0.886702092660535	0.973794308941933
Merged-chr3-103021509-1	chr3	103021009	103022009	+	1000.0	f0_c57.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	963.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	7.26663211380177	7.19718490330111	6.8044038242482	7.16823971834443	7.25293301673101	7.17215389747604	0.125869732178684	0.624101691979557	0.891819943546416
Merged-chr19-34195884-3	chr19	34195389	34196389	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	2955.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.58996319887155	5.72607438640632	5.55655149572975	5.85644717297274	5.91532497210963	5.85976900806258	0.448358667713855	0.144823663691122	0.507645438049158
Merged-chr2-91090431-3	chr2	91089924	91090924	+	837.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6254.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	5.94702524667568	5.72256505926488	5.86365556935024	6.12140515144292	5.81476586071894	5.85067481039128	0.158123766036961	0.611061621186711	0.885882313367085
Merged-chr5-113828528-2	chr5	113828037	113829037	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009151, intron 1 of 1)	intron (NM_009151, intron 1 of 1)	1964.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	3.14154285999481	3.08807165305558	3.19787988862065	3.09625785628491	2.96810946219125	3.67567658755474	0.55303815955897	0.429317835439296	0.795682190695026
Merged-chr6-39781895-4	chr6	39781391	39782391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29045.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	7.74166059318574	8.17889274319669	7.78627975532626	7.89263004246891	8.19572256104583	7.74552928548345	0.0612949322967023	0.812556088061267	0.955654408687215
Merged-chr2-159646125-4	chr2	159645629	159646629	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301212.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.38436578039146	4.62449178151203	4.6409587102743	4.93055336560828	4.94679502560241	4.89888272110188	0.871434713741623	0.0306391191863783	0.211658910605536
Merged-chr4-8912183-1	chr4	8911683	8912683	+	1000.0	f0_c57.idr	Intergenic	Intergenic	160859.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.71998301853767	7.89226604777997	7.81767699707602	8.11480170202019	8.54308684178176	8.04654793889152	0.637214332363149	0.00888586436446712	0.0927649355001395
Merged-chr8-71271872-3	chr8	71271362	71272362	+	803.716675	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	728.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	4.99020870512727	5.11440810010925	5.15426100307574	5.24518740642333	4.91899759071785	4.90068818897981	-0.110374917833163	0.770953961752644	0.943542055208477
Merged-chr17-5238891-6	chr17	5238328	5239328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179939.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	7.27064069642408	7.62710525837389	6.96449228096153	7.07660303852072	7.2547003701183	6.82368621959962	-0.379058244466931	0.19200985763766	0.57896940713307
Merged-chr4-136121639-1	chr4	136121139	136122139	+	545.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22183.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.6315890221392	3.4386838424179	3.64792350495815	3.7830838905964	3.43890646655036	3.4433615301644	-0.0251780124958835	0.965727886583319	0.99204066600196
Merged-chr2-92058663-4	chr2	92058180	92059180	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34510.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	3.62426356868936	3.23877921942171	3.14274609835527	3.30882703976673	3.31764761411586	3.50602357486616	0.0694023957647143	0.91462385576687	0.980912729144991
Merged-chr2-51971702-2	chr2	51971202	51972202	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	1506.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	3.56737296271683	3.13855845707739	3.60108526923361	3.40712852415334	3.32503913980855	3.56886305387661	-0.0593123862784334	0.924942385279115	0.983070278897208
Merged-chr2-167802082-2	chr2	167801582	167802582	+	795.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110905.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.34393612716766	7.01147680580461	6.99593451949472	7.16209784621596	7.29138686100574	6.81547422801034	-0.0247186027453644	0.927913288395095	0.983743715844859
Merged-chr19-8843139-4	chr19	8842650	8843650	+	940.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 3 of 10)	intron (NM_008144, intron 3 of 10)	2647.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	3.42678099076378	3.70779999165997	3.62152423546823	3.34474947698739	3.19346292257046	3.48132252901856	-0.964460157370021	0.111749126627027	0.446459947586386
Merged-chr10-77623844-2	chr10	77623344	77624344	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	B3|SINE|B2	1523.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	5.21356979844044	4.97898747046136	5.13959377936407	4.85261879311663	5.21609718085457	5.10337757972153	-0.086178446660843	0.820198762814187	0.957544914010115
Merged-chr3-95498417-1	chr3	95497917	95498917	+	541.0	f1_balb.idr	promoter-TSS (NM_007802)	promoter-TSS (NM_007802)	-793.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	3.28944628103533	3.38047701460106	3.2001021880989	3.28555230092679	3.03381691468471	3.44004262593258	-0.158379071210685	0.806191335288335	0.954121451132953
Merged-chr1-180971077-2	chr1	180970577	180971577	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 19 of 22)	B4A|SINE|B4	28559.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	3.6528460828867	3.86283094387363	3.97315373935048	3.59371006657804	3.71058541831375	3.69917099999083	-0.532539621250697	0.327869036279622	0.720032905876501
Merged-chr16-78302023-4	chr16	78301525	78302525	+	769.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025192, intron 1 of 6)	CpG	354.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	2.89715333452707	2.67330441077337	2.77744036133413	2.64754551487541	2.37377661131999	2.72796683948835	-1.11963248314004	0.168721852455641	0.545394813687464
Merged-chr6-113747436-2	chr6	113746936	113747936	+	784.325012	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-6755.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	5.49458377683348	5.39164848314411	5.21639489654135	5.71189969800725	5.9482577692611	5.44913844423179	0.661127909733086	0.0585488917960517	0.312952796850123
Merged-chr15-9529886-2	chr15	9529386	9530386	+	725.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008372)	promoter-TSS (NM_008372)	-10.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	2.55088896392213	2.69690658709539	2.86957178675553	2.73638288759106	2.90196607298671	2.9993974326272	0.90093260840634	0.229228235784159	0.624729718749086
Merged-chr4-33243293-3	chr4	33242848	33243848	+	609.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5439.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.30813167004487	4.09625664314446	4.4345445431401	4.39065669559986	4.08294065608648	4.41880376470194	0.0480949923153188	0.919500353034406	0.982034101943453
Merged-chr7-27552249-4	chr7	27551742	27552742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 1 of 13)	intron (NM_001317355, intron 1 of 13)	976.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	5.05343927509214	4.86884907125108	5.32861940847278	5.19605538761964	5.14303449715523	5.30263144938511	0.26201705447971	0.484492215498084	0.826929258213464
Merged-chr10-21882207-2	chr10	21881707	21882707	+	814.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161845)	promoter-TSS (NM_001161845)	23.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.67990579606499	3.46489579581309	3.33942031606151	3.55281493747697	3.3418918230934	3.78651691580017	0.208172275132298	0.733323500218397	0.932047929585476
Merged-chr16-76355458-4	chr16	76354942	76355942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	ID4_|SINE|ID	17607.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.7545980649776	5.38859918286739	4.93114190001282	5.89924245850891	5.92939053013774	5.2786608694184	0.611378591383614	0.149451781394862	0.515935104605388
Merged-chr1-136636894-6	chr1	136636367	136637367	+	770.8229980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	11966.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	6.79962868890979	6.88782545430721	6.65255625902558	6.87441058940773	7.35772289839964	6.69475494729679	0.358471832386858	0.222159626131554	0.617070381781888
Merged-chr14-73442852-2	chr14	73442352	73443352	+	630.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57563.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.09516328675563	5.95775146444037	6.36340179307459	5.98779397589022	5.81097408210471	6.31463351100763	-0.168777271154373	0.599775827865239	0.881197893564797
Merged-chr3-94974661-4	chr3	94974176	94975176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293716)	promoter-TSS (NM_001293716)	-55.0	NM_001293715	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	6.86333181207718	7.02976282760467	6.98867428886789	7.15452566998598	7.01017873678521	6.79897074174712	0.0617190463886498	0.807561996543515	0.954557080558103
Merged-chr3-55949349-4	chr3	55948865	55949865	+	837.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 33 of 57)	intron (NM_030595, intron 33 of 57)	102260.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	2.77657518333264	2.72897745051519	2.80459301704289	2.47176607226966	2.69889225042234	2.8173750445197	-0.53963786293731	0.482678523992535	0.825747658710697
Merged-chr10-96294911-4	chr10	96294421	96295421	+	793.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	68714.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	2.56460070777895	2.64852958459062	2.59533090974685	2.63825059171743	2.51288148758236	2.73102299945303	0.121509480773242	0.87322548253141	1
Merged-chr9-26962437-3	chr9	26961934	26962934	+	658.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37115.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	4.22252732708545	4.28660428036389	3.96144256704003	3.53574559544884	3.90361936952394	4.03120376451566	-0.99015334482063	0.0707086383812844	0.348632637024764
Merged-chr7-16017627-1	chr7	16017127	16018127	+	600.333313	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18132.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	4.79839640359009	5.2892024923116	5.57040524046333	5.01904662691391	4.773477657354	5.2202403498154	-0.501224216315627	0.24097311227477	0.638007204328764
Merged-chr5-76142055-4	chr5	76141552	76142552	+	993.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020611, intron 1 of 5)	intron (NM_020611, intron 1 of 5)	1779.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	3.62242421740274	3.86699150405833	3.53898284537858	3.90809775614528	3.89864230468473	3.88276394018386	0.657557225365395	0.226952716853368	0.621950454959491
Merged-chr4-132534445-1	chr4	132533945	132534945	+	602.0	f1_c57bl6.idr	intron (NM_007512, intron 1 of 3)	B1F2|SINE|Alu	969.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	4.40701335377891	4.90340476604952	4.88229900661225	4.71028674788617	5.24698174342552	5.11787757179878	0.658027629234649	0.134361421455763	0.490077109965232
Merged-chr1-40086867-2	chr1	40086367	40087367	+	763.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	MLT1E|LTR|ERVL-MaLR	774.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	4.51242912656107	4.25980022086806	4.16707096141109	4.2393388370077	4.15660963042927	4.3727656529408	-0.203689582986547	0.663046332776746	0.906981197417144
Merged-chr17-83675610-4	chr17	83675098	83676098	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-30565.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.70204873096712	6.25864441407089	5.65763681196736	5.88611617918311	6.16759100570039	6.07308977907607	0.231220212436824	0.500609491356016	0.835148757077438
Merged-chr7-31089889-3	chr7	31089397	31090397	+	883.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13200.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	3.93905682795786	3.77572055886041	3.90064615304037	3.47229252392313	3.08315574851478	3.32572612526444	-2.20103786601269	0.000551094584984479	0.0113391390275442
Merged-chr11-29986451-4	chr11	29985954	29986954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 2 of 41)	RLTR20C|LTR|ERVK	39579.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	4.00979851908108	4.2097998276909	4.29347241240109	4.11341362480414	3.84848247471924	4.35991557077038	-0.169043675172685	0.739006524793804	0.934148435497263
Merged-chr16-32803736-3	chr16	32803230	32804230	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6295.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	2.39886120556227	2.50788614648182	2.66896828136162	2.6338632503446	2.36801712695677	2.74224565363611	0.34464894966432	0.671822338732779	1
Merged-chr16-33375633-4	chr16	33375107	33376107	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5129.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	5.560561142705	5.19044521998293	5.13517382046298	5.26177294378052	5.25575262660744	5.51094394900174	0.0443583057062827	0.903785421655585	0.977858102400597
Merged-chr15-38060848-2	chr15	38060348	38061348	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	18006.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	3.64634569082789	3.78423192089895	3.88965379832056	3.86819420458538	3.88866890500952	3.85999324577668	0.325502438378543	0.531392502004496	0.851584549697133
Merged-chr10-49049426-4	chr10	49048947	49049947	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	738490.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	6.83727602113332	6.58266345056642	6.36235437926986	6.19922157136528	6.14894106478571	5.6283529853415	-0.962344983083769	0.00333223434773514	0.0455134559831992
Merged-chr9-20961695-4	chr9	20961205	20962205	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	4.53055485435755	4.67988632861609	4.56616734778943	4.19276769141485	4.00627979079433	4.24506007244291	-1.20469290976056	0.00786074451494372	0.0849798896435471
Merged-chr13-23551647-4	chr13	23551129	23552129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	14.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	6.39364062204557	6.52710644219735	6.6634041433856	6.63556719283323	6.92481931418064	7.01947583195057	0.537541093048584	0.0476449735323861	0.276513157153593
Merged-chr7-30956866-4	chr7	30956367	30957367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-64.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	7.89908879478187	7.43997571308636	7.63218413503061	8.02550888468023	7.0415794458426	7.61462813309291	-0.0682575506505025	0.830609402503961	0.960362199059651
Merged-chr5-122894956-4	chr5	122894474	122895474	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	5376.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	6.65339050564502	6.3686516783036	6.44774903144703	6.43004569440029	6.733920504878	6.35347254439288	0.0491985276361616	0.863426671538846	0.968254670575276
Merged-chr15-82999149-3	chr15	82998653	82999653	+	671.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271411, exon 6 of 6)	3' UTR (NM_001271411, exon 6 of 6)	23985.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	2.82652997900149	3.00634769733465	3.39852161153096	3.07586747495289	3.18302680568675	3.51789049690236	0.721872807363161	0.315659232008343	0.709904338715791
Merged-chr7-46833451-4	chr7	46832944	46833944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12360.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.95461747499779	7.28181409358477	6.72770169584814	7.17966810303012	7.01377998498415	6.75352706627741	-0.0283439402163472	0.920839294287796	0.982463724790289
Merged-chr16-44242780-4	chr16	44242201	44243201	+	964.792847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	69304.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	4.1297608249762	3.9793763225393	3.96030357708817	4.57959966785327	4.47382261187887	4.65784416062961	1.44472522053554	0.00193147589642514	0.0301019378890696
Merged-chr1-133611027-2	chr1	133610527	133611527	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-747.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	2.99020799371137	2.93930950040927	2.99983961586499	2.91043077160265	2.85396129076942	3.01318573288559	-0.252909413569536	0.709399838961626	0.923961035007839
Merged-chr3-133659995-4	chr3	133659502	133660502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115612.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	2.8183621357217	2.57843733466249	2.72479215436726	2.85136869386974	2.6582008955451	2.97856316809438	0.619781412005898	0.409094097787563	0.782496023117205
Merged-chr5-20935589-2	chr5	20935089	20936089	+	703.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	RMER10A|LTR|ERVL	-15400.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.54924215190185	4.88318456684559	4.72077850404488	5.06619423615286	5.11727979487419	4.86681301284984	0.666589438399672	0.0950586601164818	0.411104001609782
Merged-chr11-75137277-4	chr11	75136775	75137775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	30877.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.93276901559544	6.9475766816912	6.5464550380543	6.81705132641169	6.99751439289327	6.20985876442561	-0.151227967685319	0.63861559921902	0.897629625437208
Merged-chr2-26493128-4	chr2	26492629	26493629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10693.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	6.93823276362206	6.49746578207014	6.4730259549455	6.86136618403297	6.75253574185947	6.93310172408536	0.287918929460027	0.305986201635198	0.702029389408044
Merged-chr4-125063916-2	chr4	125063416	125064416	+	943.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175223, intron 2 of 5)	intron (NM_175223, intron 2 of 5)	1741.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	3.00420707329286	2.7161444933689	2.92213285386519	2.83473467022296	2.72733010348248	2.93531448475536	-0.273887351715182	0.704237960631658	0.9223772679418
Merged-chr10-8848365-4	chr10	8847868	8848868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37702.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.05691786071366	5.70356239388317	5.34934607528358	5.90177892294083	5.80111890085637	5.51352051137202	0.0123404238680539	0.972984755037993	0.993909316613403
Merged-chr9-58269027-4	chr9	58268546	58269546	+	924.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	15882.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	5.29765237405402	5.15977927344534	5.43598599450372	5.53240589455744	5.60687144439648	5.37864649151394	0.435229212914806	0.202018764321222	0.591761506077597
Merged-chr7-72260981-3	chr7	72260544	72261544	+	829.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024703, intron 1 of 22)	Lx7|LINE|L1	45551.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	2.55610909747071	2.62539118735984	2.72095360240025	2.37926012761958	2.17506177772831	2.41917297262034	-2.13869477714542	0.0182226572893896	1
Merged-chr19-9952528-4	chr19	9952021	9953021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28079.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.51863981968555	7.65708703937772	7.49984697206965	7.79702743586178	8.1018490972543	7.64573583507065	0.444531674632813	0.0664377416743198	0.336712852310684
Merged-chr6-54932714-1	chr6	54932214	54933214	+	541.0	f1_balb.idr	intron (NM_001171007, intron 9 of 11)	MTEa|LTR|ERVL-MaLR	38947.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.81049578563467	2.88768105148211	3.00258962329527	2.81024277899478	2.77477713127881	3.01706687713762	-0.163748039680634	0.816322396997396	0.956643437733044
Merged-chr1-55430453-4	chr1	55429959	55430959	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24513.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.39049556891608	6.79444249260932	6.24558169784318	5.13751147580779	4.80522809162337	5.14778895618693	-2.75343426332683	8.30303056221494e-15	2.21435438147686e-12
Merged-chr11-75630884-4	chr11	75630392	75631392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-128.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	6.94136716388381	6.80360551319559	6.38719309671503	6.65953287528371	6.85472097965654	6.40700162777515	-0.12295615302476	0.681132652244689	0.914599647187446
Merged-chr19-60663208-4	chr19	60662707	60663707	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-82184.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	4.56115632864289	4.12658208059425	4.22296538327797	4.4065077260243	4.24134642692556	3.81389375581912	-0.366756745420258	0.490052264480453	0.829980359087456
Merged-chr10-60391241-4	chr10	60390825	60391825	+	907.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8401.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.89817332701271	3.81732718727735	3.69248761633404	3.37375979943986	3.4071372706027	3.54742318361052	-1.32338633972664	0.0202751168665717	0.162937215011947
Merged-chr9-40756598-4	chr9	40756115	40757115	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-44658.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.52601337508444	3.51026115740932	3.37137519994401	3.62792368240725	3.38806572425775	3.50021110714514	0.115005986894635	0.843849066125627	0.963657728808602
Merged-chr11-106687536-3	chr11	106687037	106688037	+	760.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 6 of 14)	intron (NM_001305158, intron 6 of 14)	27744.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	2.98260487084614	2.90177429712009	2.92996479045995	2.88687093050576	2.68072598092988	2.81880261599724	-0.72809218199864	0.306791161918214	0.703055711392194
Merged-chr11-120583515-2	chr11	120582978	120583978	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1858.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	3.81491357417749	3.83543096590457	3.84857653287009	3.61169806748376	3.87820063416988	4.01243951316287	0.0282834814385718	0.957555808532544	0.98996830630481
Merged-chr6-108307424-4	chr6	108306908	108307908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	94312.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	6.08596072696436	6.34231826104158	6.07199410011719	6.06086490197957	5.94958792418532	6.0190682808234	-0.292724838744677	0.317423235558827	0.711302795223616
Merged-chr7-30586100-1	chr7	30585600	30586600	+	551.0	f1_balb.idr	exon (NM_001290573, exon 3 of 37)	exon (NM_001290573, exon 3 of 37)	2626.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	3.13280009211297	2.90902513223996	3.34237197813623	3.25544559949964	2.98842421116325	3.75273903456697	0.912190698807294	0.206534293143299	0.597141275948059
Merged-chr16-30873701-4	chr16	30873199	30874199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207733.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.43145644165673	6.91121155122415	6.70076696875772	6.87283531026136	7.15312415155934	7.17074305554448	0.575628069923638	0.0386202494693997	0.243595642650835
Merged-chr19-5074798-2	chr19	5074298	5075298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	6720.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	2.89919811330098	2.89078123111271	3.0745598438995	3.1481112221727	3.21324574378729	3.02770657157583	0.844611608684783	0.208168165757647	0.599041414336639
Merged-chr4-16082373-4	chr4	16081902	16082902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-68514.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	4.48083096241574	4.52637527074067	4.66547820200991	4.40963635241047	4.1148846777793	4.27345838934788	-0.747578439900171	0.0959588338775541	0.412951471230873
Merged-chr5-125364094-4	chr5	125363600	125364600	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23006.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.45641336488763	5.50466958390893	5.75983883347057	5.20646379581982	5.32801646377906	5.6226815880992	-0.353653978560701	0.312169149955349	0.707013544992643
Merged-chr7-4504906-4	chr7	4504401	4505401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 12 of 12)	intron (NM_001360154, intron 12 of 12)	-3221.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.79501221423788	6.74837677582455	7.06084548074117	7.08800101276509	7.07742991643844	7.20308502975586	0.389129382273231	0.11970773328437	0.462446774275774
Merged-chr9-99137906-2	chr9	99137406	99138406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	ID_B1|SINE|B4	2305.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.11183559746984	2.97510579856566	3.13012314869496	3.1215021704991	3.24255121783999	3.08409235390859	0.372031081714844	0.568043854474966	0.868489297597577
Merged-chr1-181125343-4	chr1	181124845	181125845	+	715.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 10 of 22)	ORR1D1|LTR|ERVL-MaLR	18859.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	3.15630676386356	3.3643074518986	3.06533669476952	3.34323893516714	3.41848894492791	3.74243568259369	1.16130728946012	0.0761971820560571	0.363369438179621
Merged-chr15-101078360-2	chr15	101077860	101078860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23961.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	5.82375410864079	5.14116366493173	5.61307699110347	5.62988163119472	5.24965043313002	5.11163956828961	-0.390657410613616	0.328369299809026	0.720562985671201
Merged-chr2-59493709-3	chr2	59493213	59494213	+	747.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029723, intron 1 of 3)	intron (NM_029723, intron 1 of 3)	9060.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	2.80699162190279	2.82262015746298	2.90663735071269	2.77154354441383	2.62044716043443	3.09195544511541	-0.0421898174635331	0.954749030350658	0.989632604390128
Merged-chr16-10990109-4	chr16	10989588	10990588	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	3033.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.25581976704056	5.18934229418712	5.58492730470784	5.28976094873179	5.47663751905228	5.45572339050685	0.135696540687052	0.700485737402183	0.920919335036368
Merged-chr15-59056655-4	chr15	59056151	59057151	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 2 of 14)	intron (NM_144800, intron 2 of 14)	25375.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.02223098901207	3.95975912042088	3.77964263761951	3.59591748969801	3.75024017138698	3.74423507854573	-0.744282156140237	0.162813336775767	0.536188662408322
Merged-chr2-4573499-4	chr2	4573011	4574011	+	958.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	MTD|LTR|ERVL-MaLR	13757.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.04600571323696	6.11141076536891	6.30193731536158	6.04563392208865	6.17636705550653	6.2459092328721	0.0111302441018412	0.969144924138209	0.992995172144871
Merged-chr19-55227283-4	chr19	55226765	55227765	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 8 of 20)	intron (NM_001081076, intron 8 of 20)	13971.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	4.17821305370591	3.58332220562719	4.14008755170969	3.70676279364515	3.81700712327308	4.07483530192945	-0.369503111073799	0.517411928981103	0.844537090247943
Merged-chr5-18012905-2	chr5	18012405	18013405	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	B1F2|SINE|Alu	50335.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	5.46759240873083	5.46569765331478	5.31108914638435	5.23514943870758	5.3118221449392	5.57722843782107	-0.0960259069824895	0.780732373864246	0.946078518476608
Merged-chr11-94385848-2	chr11	94385348	94386348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	7128.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	7.39436848755937	7.58723344623621	7.20632923344656	7.46879612878382	7.60442255690879	6.94678380243541	-0.0430129513517504	0.87877628590828	0.972000507462599
Merged-chr9-75435367-3	chr9	75434852	75435852	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-6172.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.57581734897191	7.54605877684472	7.41820215574735	7.49885470150817	8.02772158704357	7.63636253776259	0.335279144956719	0.187016906005836	0.571917092105154
Merged-chr9-60492427-4	chr9	60491915	60492915	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 2 of 17)	CT-rich|Low_complexity|Low_complexity	18620.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	4.76989679874013	4.76324266444608	4.4531775815047	4.30372608797851	3.92852399066424	4.43407361673414	-1.15825739285168	0.0151104950963084	0.133359575304798
Merged-chr2-6279281-1	chr2	6278781	6279781	+	609.0	f0_balb.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43476.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.20790698913603	3.22805721068065	3.43426807093235	2.8799511845091	3.15471931907454	3.06100844511435	-1.07343581356253	0.114770404043834	0.452297801443559
Merged-chr9-118610763-4	chr9	118610256	118611256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4047.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.93380679706855	7.74956943491341	7.68906034023594	7.93685436773793	7.94236319063964	7.78111633934273	0.133966747715221	0.546224969362611	0.858573157729455
Merged-chr7-75783284-2	chr7	75782784	75783784	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65054.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.43216974699494	5.37108997729041	5.37273065667557	5.698008930316	5.69933306762848	5.86711801679494	0.671827841287278	0.0363836559928413	0.234683042469174
Merged-chr6-124993014-3	chr6	124992543	124993543	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3677.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	5.16581827637838	4.79132683348384	4.66735149988684	4.17573708736959	4.28519305733299	4.43554198982164	-1.47480833487871	0.00102827690319766	0.0184279268923694
Merged-chr12-16904100-3	chr12	16903599	16904599	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	ORR1D2|LTR|ERVL-MaLR	9121.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.15921706731984	2.87515206187901	3.29572263502717	2.93579169226486	2.79285890056211	2.84829098645586	-1.22455770895666	0.0888381421261368	0.395740892447754
Merged-chr19-10183618-5	chr19	10183168	10184168	+	834.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	780.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	5.20318726183167	5.78833141140794	5.80875344238401	4.89040869150421	4.30403951315576	5.04251830489291	-1.76691755721048	8.79890428591799e-05	0.00255053300977823
Merged-chr2-90847144-4	chr2	90846652	90847652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	-3.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	7.8315345223964	8.06183471328134	7.67636712617437	7.64867526272919	8.01102138132971	7.40373060236223	-0.21182840477848	0.428904800118892	0.795570481157701
Merged-chr9-35103693-3	chr9	35103168	35104168	+	564.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-13060.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.73005267733056	3.95812581450383	4.2502735596025	3.81475927571346	3.84271638504552	4.148728296105	-0.154069113848682	0.774939275455821	0.944517829695789
Merged-chr12-55863182-3	chr12	55862664	55863664	+	914.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001037756, exon 8 of 10)	exon (NM_001037756, exon 8 of 10)	26798.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	4.50696443609238	4.62916278617064	4.37284277562514	4.84571178711742	4.76513256408269	4.44253274843447	0.454409195939475	0.295765583133179	0.692654652514324
Merged-chr2-128124158-4	chr2	128123643	128124643	+	924.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028765)	TTS (NM_028765)	-1895.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.99558489027123	3.98457925997535	4.06367916336396	4.05377929438895	3.76558529517186	4.13164125796354	-0.0883033678680195	0.861662669907629	0.967965808528068
Merged-chr19-40677354-1	chr19	40676854	40677854	+	1000.0	f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	17584.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.00045094233356	5.73095673663516	6.03961119599283	6.17207935005345	6.20399694729222	6.24659873256588	0.485359422615814	0.0991865547031514	0.419941731223723
Merged-chr11-50431625-4	chr11	50431101	50432101	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172557)	promoter-TSS (NM_172557)	-490.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	7.89658388266601	8.43586213425475	7.99696360580538	8.23062298562167	8.25940424770203	7.86928518741064	-0.000259765234517836	0.999204509119435	0.999910586345539
Merged-chr7-83852221-4	chr7	83851788	83852788	+	852.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32053.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	4.029857071931	4.33117397987947	4.40897105540492	4.28004823689278	4.34649220149852	4.11488418531919	-0.0107396109714011	0.982065602375439	0.995974388056157
Merged-chr4-16101580-4	chr4	16101122	16102122	+	846.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62021.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.45200925999789	5.87818105970792	5.99720594748271	5.38434709099912	5.14793262625862	5.31275075815934	-0.968126710921996	0.00682789776878846	0.0767488782469
Merged-chr3-87566724-2	chr3	87566218	87567218	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	41140.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.72903816758357	3.56048455924682	3.79530598980927	4.85901052688891	4.99875465133162	4.61055325427447	3.39551198200412	2.83413928990627e-10	3.40784771726187e-08
Merged-chr17-26941328-2	chr17	26940828	26941828	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281491)	promoter-TSS (NM_001281491)	-124.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	4.21959904194546	3.69843190403555	4.04996410863621	4.2628751799342	3.97611397587903	4.07104405118574	0.288068956419339	0.585906067680889	0.875151634078149
Merged-chr15-38385862-2	chr15	38385362	38386362	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85151.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.37826575995036	5.31173832685435	5.19091446473771	5.21864079630565	5.29787735327356	5.00484815660019	-0.222762381371066	0.533519414780712	0.852484319020423
Merged-chr3-9249906-4	chr3	9249417	9250417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-650.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	6.3952643972304	5.92235200670122	5.24391623711587	5.61275074563241	5.10273711030398	4.9027030675492	-1.28516284757652	0.0803688781614814	0.375165981153467
Merged-chr5-115336909-4	chr5	115336380	115337380	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029645, intron 1 of 2)	B1_Mus1|SINE|Alu	4281.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	4.35222580512025	4.5169796647631	4.77435900701559	4.45391444605556	4.73052393746939	5.00684986033292	0.45728493919806	0.308347023185856	0.704435206887286
Merged-chr10-117436926-3	chr10	117436453	117437453	+	671.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10482.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	5.82352811229886	6.22067358990252	6.11882312104388	6.04476351765351	6.41598013606755	5.676324697481	0.0557405642736468	0.872980230170048	0.970350599422374
Merged-chr4-63868985-3	chr4	63868487	63869487	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7703.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	2.83245489319061	3.1198298339635	3.08078827609998	3.22929432523181	3.00266653502926	3.03386529619598	0.338453835903813	0.621315670274741	0.890659217105386
Merged-chr8-73849965-3	chr8	73849457	73850457	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-496417.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.27374398326374	4.51102092383713	4.43540848833525	4.07158801633895	4.10711770092946	3.99345654874953	-0.9555564150735	0.0428007618672274	0.259385709646632
Merged-chr8-124019908-2	chr8	124019408	124020408	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133966, intron 1 of 4)	MIR|SINE|MIR	1148.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	3.50607694373969	3.53395682640266	3.75453268168087	3.82045777852671	3.79474633159318	3.82393791008439	0.736306714757002	0.174171559255451	0.55334916165878
Merged-chr8-24420553-4	chr8	24420054	24421054	+	821.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18392.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.50776282328313	5.00075799129656	5.30654648123249	5.36769058928446	5.11938828821959	4.99603237250291	-0.234542428029117	0.54531446039889	0.858059274547204
Merged-chr14-50832328-1	chr14	50831828	50832828	+	571.0	f1_balb.idr	intron (NM_009351, intron 43 of 54)	B3A|SINE|B2	24412.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	2.79069105207712	3.00931277755201	3.07659302970489	2.98302965000994	2.99791796068972	3.40641427540614	0.811391284336775	0.253251966909997	0.650656162496163
Merged-chr12-54656630-4	chr12	54656112	54657112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-40.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	6.96758772334962	7.08401465325747	7.10805829676738	7.17546991497422	7.07151639142615	6.93854776423509	0.0261540026632146	0.914064979265913	0.980881078085609
Merged-chr9-55307281-1	chr9	55306781	55307781	+	653.0	f0_balb.idr	Intergenic	Intergenic	-19632.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	4.77044020150428	5.0477953205987	5.09098182639041	4.56937077440368	4.38281972164508	4.52874396831346	-1.13260071242391	0.00643758551473774	0.0735491714280239
Merged-chr10-21566294-4	chr10	21565801	21566801	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26844.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.24082169780593	4.07521913516283	4.39896840622238	4.17149165816003	4.34547987192808	3.84006094997402	-0.251546141600564	0.623987603962086	0.891772191791372
Merged-chr16-14378812-4	chr16	14378288	14379288	+	964.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	17230.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.00820615863329	3.24754042781887	3.11773301205007	3.14971617322615	3.10655193142993	2.94423283098988	-0.246849621291572	0.712367455653047	0.925048627306913
Merged-chr16-30722531-4	chr16	30722030	30723030	+	922.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122807.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.14052224937416	3.0583960530298	2.81950315743152	3.10397695890257	3.01762233816725	3.08354265332846	0.216757754608541	0.753320018677705	0.938549578325581
Merged-chr9-21923526-2	chr9	21923026	21924026	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3762.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	5.37904243604487	5.42105130871577	5.32870814374842	5.24425757012311	5.3609935201933	5.48098166897084	-0.0370898048998332	0.912705556749521	0.980421166341954
Merged-chr2-91475910-3	chr2	91475416	91476416	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 8 of 37)	intron (NM_172668, intron 8 of 37)	18385.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	5.10773561978993	5.10849028422119	5.14764575942628	4.90899321718615	4.89937940848496	5.07909224858142	-0.346764239311957	0.343687307799099	0.73255987016498
Merged-chr10-53928104-4	chr10	53927618	53928618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	147678.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	6.6509341725329	6.83859690117758	6.16598034028581	6.03974931161165	6.01828290069115	5.80062997953786	-1.04462607679555	0.00106035321141769	0.0188499824756466
Merged-chr17-65785898-2	chr17	65785374	65786374	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	RLTR13D2|LTR|ERVK	2519.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	4.94753861717418	4.9297575249656	5.48680856210553	5.23370758398058	5.04725404121112	5.20375450824027	0.0566992720864963	0.885706645760461	0.973636976161493
Merged-chr2-122681428-1	chr2	122680928	122681928	+	541.0	f1_c57bl6.idr	3' UTR (NM_001290993, exon 6 of 6)	3' UTR (NM_001290993, exon 6 of 6)	21235.0	NM_011774	22785.0	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	3.63186867727399	4.05744135796019	3.94381867943799	3.77454933071084	3.82528660176608	4.14823495852754	0.087893519594361	0.872242306033841	0.970261003150518
Merged-chr12-110608966-4	chr12	110608497	110609497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	intron (NM_030238, intron 1 of 76)	7602.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	5.94825556605817	5.68790565755464	5.8004412925058	5.69809224041379	5.65992288781857	5.7342749737375	-0.222103709242284	0.47563451057263	0.822063360316711
Merged-chr5-105616818-4	chr5	105616303	105617303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83166.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.52609596022287	5.82455033068014	5.69134117491474	6.20775216972861	6.22579578199185	6.06659510623815	0.149657180084313	0.677016443008484	0.91266256545023
Merged-chr6-124957530-4	chr6	124957015	124958015	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164089)	TTS (NM_001164089)	8023.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	6.25516499118866	6.04675959521669	6.33506443545713	6.43921794417085	6.5118189551851	6.31711924007113	0.364250613351427	0.193683027106661	0.5810016705228
Merged-chr16-36655510-2	chr16	36655010	36656010	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	10567.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.30820383749458	6.05402126834183	5.54075221177261	5.92209401741835	6.17804166608192	5.81094203480211	-0.054070972128218	0.87861794273473	0.971993214431016
Merged-chr4-43010280-4	chr4	43009751	43010751	+	962.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163233)	promoter-TSS (NM_001163233)	50.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	5.13866454291329	5.27742985200549	5.15130281455457	5.02346406164245	5.0465360619971	5.33930283766367	-0.123756831927371	0.734277207792226	0.932362855272021
Merged-chr13-103897800-4	chr13	103897296	103898296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	22790.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	4.71402653147985	4.54552437054981	4.98367744672713	4.75259057524889	4.61480143197392	4.94742429276848	0.0464477771718995	0.912164574561113	0.980295639910637
Merged-chr9-66349886-3	chr9	66349378	66350378	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-572.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	6.2896523430328	6.41359425943193	6.2855287473668	6.46171126292332	6.83697812270861	6.30472247059984	0.38155367603412	0.19490959450501	0.582591632483319
Merged-chr15-9428074-4	chr15	9427568	9428568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7960.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	3.04298767404999	3.01463819507494	2.99538672108509	2.86246471615154	2.87713593697995	2.88596016811613	-0.697400186136651	0.307452209234576	0.703580177816035
Merged-chr18-58535720-2	chr18	58535221	58536221	+	660.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20519.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.51268582970558	5.94638640293045	5.96940547200053	5.3000626464906	5.73236218372368	5.89621888409456	-0.288682658585054	0.425192406043567	0.792988748085012
Merged-chr5-121661059-2	chr5	121660563	121661563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028037)	promoter-TSS (NM_028037)	194.0	NM_001289544	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	7.02411676935823	6.8093393582837	6.40431135357811	7.05387244729165	6.62530637664035	6.68539746388167	0.0334621780521626	0.912051600021728	0.980237529509273
Merged-chr5-112973793-4	chr5	112973297	112974297	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 2 of 20)	intron (NM_001285806, intron 2 of 20)	41741.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	4.64033623731161	4.32433547180625	4.50151737791864	4.44433497076264	4.06834849299448	4.00436895066936	-0.803086971579109	0.098242671212057	0.41779495994137
Merged-chr2-91197745-2	chr2	91197245	91198245	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	7.34252428062955	7.52574423016443	7.49657590581043	7.07010353226483	7.50085031630699	7.44306468851874	-0.150993557216522	0.547390016065684	0.859266262227511
Merged-chr6-48395759-5	chr6	48395233	48396233	+	837.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152251)	promoter-TSS (NR_152251)	147.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	3.25052900912403	3.42738021916685	3.31234461422676	3.25424650282583	3.34828326716914	3.43835622741383	0.049655699597405	0.934728561623685	0.985727536128156
Merged-chr11-59642096-2	chr11	59641596	59642596	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-20399.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	2.80127943095415	2.6898139053877	2.99762357895291	3.21445436660358	3.07647581860426	3.35037906960401	1.85385608569866	0.010171974247723	0.101583009266027
Merged-chr12-111150412-2	chr12	111149912	111150912	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15958.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	2.81198576318379	2.48854374265004	2.55906704803726	2.71111959191431	2.56779208152887	2.76085893506101	0.267944780406237	0.732246297464982	1
Merged-chr3-89386211-1	chr3	89385711	89386711	+	553.0	f1_c57bl6.idr	intron (NM_001355206, intron 1 of 3)	intron (NM_001355206, intron 1 of 3)	1460.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.7532981963718	3.54886474042033	4.14182728756456	3.9617305131151	3.82172306744713	3.93890680738611	0.246846601415962	0.656828641711687	0.904707790424533
Merged-chr17-71596993-3	chr17	71596413	71597413	+	644.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	1368.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	4.12853353782525	3.6407852243589	3.75953661653161	3.48324324298038	3.70633669562353	3.55683824929141	-0.906489758804156	0.120471629187791	0.46414795209787
Merged-chr6-128759685-2	chr6	128759181	128760181	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	28960.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	3.41050168940699	3.219387008662	3.50768159509464	3.05286771176964	3.19930534991151	3.13662936628616	-1.0211441231635	0.113831087775335	0.450687911667782
Merged-chr2-128706981-1	chr2	128706481	128707481	+	565.0	f1_balb.idr	intron (NM_008587, intron 1 of 18)	MERVL_2A-int|LTR|ERVL	8066.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.86462901970094	4.76635723557252	5.17218358912505	5.10464685154162	4.97845433124574	4.9690637337769	0.187124003950719	0.62925593986497	0.89414133413512
Merged-chr19-21894873-3	chr19	21894339	21895339	+	767.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	116499.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.10647260489007	4.14543244304234	4.01499472692612	3.81002377939476	3.96943599082055	4.34879052681487	-0.11545256415663	0.822159656202951	0.958041123079214
Merged-chr5-117872341-4	chr5	117871858	117872858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5519.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	7.55648943250284	7.55993962730323	7.70537218344079	7.38366013967527	7.4300910075015	7.61123605933975	-0.192038583110584	0.398768732611649	0.775423220616012
Merged-chr16-45174056-4	chr16	45173559	45174559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356366, intron 4 of 10)	Lx8|LINE|L1	15230.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	5.01793608551464	4.80025945522408	4.88909603666162	4.43167611977293	4.22506744519656	4.57182659397185	-1.21297905224603	0.0043625227520542	0.0555720748856285
Merged-chr17-33772140-3	chr17	33771639	33772639	+	792.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	9436.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	4.48038369004832	4.28640795812483	4.38207261293464	3.74112408764987	3.71020528329614	3.59792144890513	-2.13869209860136	6.37500553148935e-05	0.00194091277081656
Merged-chr8-108576244-2	chr8	108575744	108576744	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	8433.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.38021588329455	2.31124132267811	2.40040311730345	2.40378628190038	2.30213199158049	2.53755149787766	0.318900647865277	0.696987996628061	1
Merged-chr7-143041695-4	chr7	143041210	143042210	+	921.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11040.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.33267736793046	5.4595825490075	5.35480605887149	5.7891350230061	5.44867197913816	5.48002287453735	0.374850645037314	0.270239900020588	0.667224165482125
Merged-chr19-7020880-2	chr19	7020380	7021380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016737, exon 14 of 14)	3' UTR (NM_016737, exon 14 of 14)	-1411.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	5.69298336962102	5.60641320712144	6.01571433860558	5.54329236466412	5.6869022739077	5.87752414378445	-0.124553889204876	0.707240799160305	0.923295611913498
Merged-chr16-91838928-2	chr16	91838428	91839428	+	992.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	B3|SINE|B2	92702.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.48099076093677	6.22561352759204	6.86768673978289	6.87588181744633	6.89131242359386	6.78227516566756	0.493777359743819	0.0894838901772323	0.397447183402751
Merged-chr1-151343200-4	chr1	151342704	151343704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1282.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	7.53548060695687	7.842462855644	7.49736490547357	7.62686208390309	8.03032209825846	7.45879816361091	0.1432997556014	0.592449896577612	0.878046778323738
Merged-chr9-66907181-2	chr9	66906681	66907681	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	12524.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.95650247408778	6.12139572300189	5.88937547143924	5.70170522369471	5.7383110528139	5.63502492718893	-0.538320437345317	0.077646927822527	0.367741224330174
Merged-chr10-37236696-2	chr10	37236196	37237196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97770.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.46654070936305	6.59069094192067	6.69527478745331	6.18541040835221	6.75289227089813	6.54200870572228	-0.0981287545987901	0.739743168517965	0.934245371298156
Merged-chr2-32607846-4	chr2	32607349	32608349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	864.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	7.48117904467314	7.08574553245109	7.02458808090872	7.49957180627914	7.6143728539525	7.29971662830362	0.38829464194832	0.140768195147269	0.501285627912947
Merged-chr10-80167667-4	chr10	80167160	80168160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007705)	promoter-TSS (NM_007705)	-179.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	7.92706912147446	7.51130440383529	7.4683094260474	7.35670739702823	7.35720084324181	7.12712679955317	-0.539592294120039	0.0361831669195117	0.233986957506588
Merged-chr11-120748286-4	chr11	120747780	120748780	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-16259.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	4.30194445313135	4.45918303379082	4.84210703934995	4.70704041489911	4.70253818235411	4.8003274402667	0.464109830853408	0.28786759496697	0.685245511851696
Merged-chr4-9119856-2	chr4	9119356	9120356	+	678.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-149437.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.95597871195449	2.94661184362172	3.07955056052354	3.32387696779296	3.10292951733315	3.3225671162829	1.14357745005376	0.0827599741705775	0.380563245691374
Merged-chr15-59740777-2	chr15	59740277	59741277	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54182.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.68281880183411	2.89186407839668	2.85977598462292	2.83285280836843	2.92429295743701	2.932386264519	0.413401898165334	0.560421991553772	0.865236087802179
Merged-chr19-41324409-2	chr19	41323909	41324909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-60405.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	5.0586019152231	5.20081903312713	5.58491150420121	5.37037536252256	5.27980348525984	5.74406298283054	0.355023071512462	0.351215440096291	0.739086949987195
Merged-chr16-57535857-3	chr16	57535338	57536338	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-13404.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.87754076141223	6.65848757142125	7.05520700473286	6.90702364088164	6.81590018793183	7.35913119369366	0.265648486638399	0.355096733112607	0.742091076566031
Merged-chr10-81143607-2	chr10	81143107	81144107	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	7336.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	2.84109448525044	2.93156983178953	3.27689182459516	2.76436501629717	3.11900485814567	3.18767187609921	0.0451700727359736	0.95098934740175	0.988570979482657
Merged-chr9-44479054-8	chr9	44478445	44479445	+	788.697937	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3880.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.75133567032947	5.91105085080856	6.3207805665764	6.0416499547935	6.1600256910798	6.48352902553381	0.391316212214731	0.23452986727985	0.630628663776774
Merged-chr1-127975774-4	chr1	127975262	127976262	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 13 of 20)	intron (NM_001285945, intron 13 of 20)	106989.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	5.59879607060112	5.39987498282908	5.18309580589211	5.77295975918963	5.74600676598172	5.13759802793858	0.345811187505261	0.365619791903747	0.75071889665134
Merged-chr4-32252216-1	chr4	32251716	32252716	+	700.0	f1_c57bl6.idr	Intergenic	Intergenic	-165219.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.42248812914132	5.52968247297462	5.74041749608648	5.01577430976669	5.04324169466735	5.35095956789555	-0.85193124210199	0.0173238498368011	0.146745688406856
Merged-chr4-155067596-2	chr4	155067096	155068096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042407, intron 1 of 5)	intron (NM_001042407, intron 1 of 5)	566.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	7.17064478210794	7.48371324210924	7.03650888518746	7.69368844971236	7.6997658336575	7.12226464314497	0.426443298705298	0.132807530059871	0.487669562823071
Merged-chr2-164458539-4	chr2	164458039	164459039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2432.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	5.69741284431947	5.32091319726369	5.73356823927936	5.72564380670173	5.76354305356454	5.76997372527707	0.301048792052782	0.362147372369578	0.747675323428227
Merged-chr10-115817269-1	chr10	115816769	115817769	+	1000.0	f1_balb.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-15.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	2.42441720676434	2.6921772029826	2.64903100958877	2.570196513214	2.32504455037296	2.53411400019913	-0.686768272264383	0.402492087661002	1
Merged-chr1-179546308-4	chr1	179545766	179546766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146105)	promoter-TSS (NM_146105)	10.0	NM_001331054	15278.0	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	6.69640784475788	7.21421494824869	7.06678685647753	7.08229527813797	7.09388310857077	7.12459392736138	0.133972997287244	0.615081005160699	0.88776513924391
Merged-chr1-173580064-3	chr1	173579554	173580554	+	906.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	19220.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	5.09246190982087	5.39511000656085	5.15572739496797	5.45901670421348	5.52892020087771	5.11438056441938	0.33063638167808	0.369187416787049	0.753885996270167
Merged-chr4-133633150-2	chr4	133632650	133633650	+	788.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017968, exon 1 of 8)	exon (NM_001017968, exon 1 of 8)	279.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	6.06966075531508	6.14664417150985	6.35035656979675	5.4336380002004	5.20255255032195	5.74005265422192	-1.31672003855687	8.32597756771415e-05	0.0024325419292639
Merged-chr17-10335201-5	chr17	10334683	10335683	+	971.338074	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10581.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	6.08131514253994	6.13908792147333	6.11171196659069	5.72769712793141	5.67417228869505	5.66379662319113	-0.745775817962018	0.0116141126905081	0.111721050722751
Merged-chr4-126883748-4	chr4	126883236	126884236	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114399, intron 23 of 29)	intron (NM_001114399, intron 23 of 29)	84187.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	3.627137972427	3.56617293330855	3.60456333833287	4.27710592149504	3.92570794775841	3.79013983850446	1.34782484310201	0.0143727982013365	0.128985879783716
Merged-chr5-30814614-4	chr5	30814115	30815115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133350)	promoter-TSS (NM_133350)	-26.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.70041248897364	4.26748952592785	4.22315946759488	4.11162041738467	3.94076340159857	4.54735005133778	-0.541258952875404	0.296119562446317	0.692837106451674
Merged-chr5-134193799-2	chr5	134193299	134194299	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 3 of 14)	intron (NM_001359852, intron 3 of 14)	9761.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	2.67547048613046	2.47209148325974	2.54131615271487	2.60394048120899	2.67973083313863	2.80209631770484	0.71679100811629	0.352986467994877	1
Merged-chr11-17257608-4	chr11	17257092	17258092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	45.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	8.14289765093393	8.61405131745792	7.92762296908667	8.07000348616071	8.42166681787924	8.10533009409231	-0.0782238712950683	0.772176279137013	0.943680976839558
Merged-chr13-9330853-3	chr13	9330343	9331343	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	54318.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.3428891947437	3.30936396656823	3.10486678072241	3.38872318048984	3.28285519756466	3.41355691945981	0.385570556788004	0.535568866990708	0.853594619199779
Merged-chr5-145137266-2	chr5	145136766	145137766	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033313, intron 1 of 5)	intron (NM_001033313, intron 1 of 5)	2823.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	2.28651516785959	2.27974238576265	2.38897643892606	2.17649121308562	2.15011670101717	2.13695606156957	-1.17842419917396	0.181619982673865	1
Merged-chr2-84800518-4	chr2	84800027	84801027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	1699.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	6.1691399842355	6.27803861254939	6.34908011307635	6.47402025192148	6.76864019164945	6.06424126715886	0.358993344895387	0.251369363967053	0.648833216107931
Merged-chr16-91843768-2	chr16	91843268	91844268	+	724.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	87862.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.62019673565615	3.84334480100885	4.06993897658307	3.80077317259413	3.85311594323736	4.09300738503714	0.206940252399139	0.701184766642398	0.921185140564303
Merged-chr1-87218144-2	chr1	87217644	87218644	+	653.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039169, intron 1 of 6)	intron (NM_001039169, intron 1 of 6)	4205.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	3.97773038544244	3.83260520653923	4.18564218461187	4.01954847143701	4.29209718311327	3.97027179462582	0.328943829058973	0.518744057242362	0.84542522050122
Merged-chr12-84023272-4	chr12	84022781	84023781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	13779.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	6.13449521128329	6.3749017209904	6.17058955916768	5.7315797797291	6.0458233368145	5.98850052856264	-0.517805234653147	0.085991397989012	0.388266185001677
Merged-chr8-115555654-4	chr8	115555151	115556151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151243.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.79829157747028	3.74068194139852	3.52766888487475	3.31953007378284	3.57285311749014	3.30362717146691	-1.02238698800439	0.0941743896942741	0.408807669568652
Merged-chr16-38403250-2	chr16	38402750	38403750	+	727.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	RMER4B|LTR|ERVK	29895.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.60065541105084	3.55889990691116	3.3657508654658	3.53645755703077	3.72584092339589	3.55402070592687	0.335628163088566	0.561369875588554	0.865407801976397
Merged-chr14-78849767-4	chr14	78849293	78850293	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027906, intron 1 of 44)	intron (NM_027906, intron 1 of 44)	615.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	5.7787038385623	6.19624659375647	5.5786917878446	5.79464244543389	5.44606396628535	5.28571902351564	-0.648637286741156	0.0791139360168008	0.371768926869936
Merged-chr17-5275185-2	chr17	5274685	5275685	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	143582.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	3.80813426626798	3.86022133318307	3.60059337250125	3.64830616826932	3.44203710183255	3.92584782632819	-0.294581375228767	0.608556888108307	0.885006356798728
Merged-chr17-65783786-4	chr17	65783279	65784279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	CpG-6545	424.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	7.25299683507485	7.03752371580203	7.19841728929019	7.40999476092856	7.29070151299447	7.26772603975133	0.239838603458662	0.309780204766162	0.705462567140587
Merged-chr11-68477450-2	chr11	68476950	68477950	+	732.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177320, exon 5 of 19)	exon (NM_177320, exon 5 of 19)	-25569.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	3.01657733447292	3.17490591337625	3.06080640496188	2.96836659341561	2.7972255776742	3.13284918821812	-0.561869829821015	0.415547564266351	0.786517486180668
Merged-chr11-32562515-2	chr11	32562015	32563015	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29249.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.26847052715585	6.23350573285248	6.04977723469248	6.41067962065893	6.05638284700348	5.80763888007102	-0.11706271950036	0.71149100484778	0.924661173262022
Merged-chr4-155163881-2	chr4	155163381	155164381	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	58654.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.86103770724396	3.50647332901515	3.72004729997383	3.47831256286139	3.18694965413402	3.78946654233887	-0.711133998672191	0.258615472267513	0.656162466533417
Merged-chr8-109751890-2	chr8	109751390	109752390	+	710.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14151.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	3.68633092915267	3.50220593618024	3.30131205006064	3.62040792002607	3.30936830594388	3.4345569495602	-0.193452356045478	0.752281523880193	0.938157651950668
Merged-chr3-144704147-4	chr3	144703641	144704641	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	16194.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	7.43915272760336	7.25506661189097	6.94387437338004	7.46376563307765	7.74086873388956	7.27043596588528	0.408544345313321	0.133086521352962	0.488093409235598
Merged-chr19-46073864-2	chr19	46073364	46074364	+	583.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081214)	TTS (NM_001081214)	-1983.0	NM_001039352	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	2.06192927224808	2.26654734126741	2.31909821166205	2.32510892820963	2.28216317591166	2.51945787338115	1.06198389532589	0.231998518112219	1
Merged-chr12-3236859-4	chr12	3236351	3237351	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	1060.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	6.65074601352759	6.31761038913567	6.31037465018832	7.12096810117894	7.03539691041082	6.72194839965532	0.838482763979087	0.00292540066062051	0.0413600591556406
Merged-chr6-70843274-2	chr6	70842774	70843774	+	662.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	4.01203937718123	4.19816699483488	4.10830773511864	3.92425511846143	3.86852925659513	4.26414003314746	-0.261805972790655	0.602798978840414	0.882397657327329
Merged-chr2-167269977-3	chr2	167269497	167270497	+	602.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29460.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.44770707044054	3.0842529147608	3.45712991777355	3.70490916755569	3.49071885357145	3.52875515004486	0.897194882430913	0.149197504947907	0.51537803021029
Merged-chr12-79093403-2	chr12	79092903	79093903	+	751.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_110486, intron 2 of 2)	L2|LINE|L2	-3733.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	3.11420301804564	2.66651703643759	2.74707092512207	2.73839479430923	2.5592586177073	2.94412009360189	-0.540387658873911	0.493201310620571	0.831208279358962
Merged-chr11-105567401-4	chr11	105566871	105567871	+	892.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22615.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	4.19621452712466	4.38602147188811	4.55003097630291	4.31407452397513	4.40613419288212	4.5766480385397	0.138964463006912	0.758215704552689	0.940104678746179
Merged-chr2-170132862-2	chr2	170132362	170133362	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	intron (NM_001159683, intron 1 of 6)	-1642.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.48244623401312	6.67547149664674	6.78352738412934	7.05596886876333	7.45153957455143	7.09278241475018	0.879986152929006	0.00104823310684746	0.0186769551080436
Merged-chr11-69415141-4	chr11	69414729	69415729	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.12122980289746	5.29550127027401	5.99955627483986	6.67796149807975	6.37795509552728	6.31595849194988	1.03442093363853	0.00434555349324634	0.0553898307392833
Merged-chr11-69407474-2	chr11	69407013	69408013	+	917.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 6 of 23)	exon (NM_001017426, exon 6 of 23)	6162.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	2.91045292881386	2.67124213224331	2.94725464051627	3.02700294079734	2.80366325224676	2.9605589809419	0.418854321464233	0.559669741295827	0.865015971352686
Merged-chr8-14824655-3	chr8	14824159	14825159	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-63877.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.15274645874547	3.02651087887941	3.29263555649004	4.42186962836166	4.18604391305633	3.90269335843933	4.44452594861178	2.21154073787299e-08	1.86064592231482e-06
Merged-chr7-16314083-4	chr7	16313596	16314596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	intron (NM_133234, intron 3 of 3)	4513.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	8.27354112592769	8.29618388099078	7.99605374656441	8.0044610608722	8.16771088190247	7.92781272663086	-0.225052078090872	0.316470637914353	0.710557877168509
Merged-chr17-5594351-2	chr17	5593851	5594851	+	648.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	101751.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.3476066976504	4.02651390004021	4.32796005058525	3.93626197440388	4.03050116292469	4.13226309506058	-0.592768587874948	0.226629397174565	0.62156609505752
Merged-chr11-95354301-4	chr11	95353812	95354812	+	935.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17294.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	7.7700612129655	7.97438014422033	7.57891000752926	7.72434961947956	8.15086877416101	7.72119965590136	0.141985186425675	0.579357846088458	0.87250443698034
Merged-chr2-50687525-4	chr2	50687035	50688035	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-222149.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.67112508110958	5.81985732917733	5.9500114607116	5.87215435083492	5.48015728306572	5.3266177366732	-0.415339254936226	0.230069309980582	0.625817164441292
Merged-chr5-123860604-3	chr5	123860106	123861106	+	819.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7A_LINE|LINE|CR1	4910.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.33853761466581	4.35545830467258	4.22761252698513	4.5433325807904	4.54524410251075	4.68050215757858	0.691929478587337	0.110606374900289	0.444412344521863
Merged-chr16-93603970-4	chr16	93603440	93604440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-125.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	8.0439812739124	8.3306923166053	7.87192608196304	7.8801492025702	8.02692767817097	7.91193604223269	-0.226483779924153	0.335106526105429	0.725339338581532
Merged-chr9-105495155-4	chr9	105494639	105495639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-6.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	7.39121298725408	7.43397394638533	7.74085890154438	7.65726949139131	7.59673420942994	7.48496771158666	0.0876926534332914	0.712087211458782	0.924891945289204
Merged-chr13-89491303-2	chr13	89490803	89491803	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49333.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.37695715670486	3.45454621438207	3.66059974417959	3.96161403242558	3.80730861339297	4.06857968797196	1.53249491754926	0.00627177404389527	0.0720903128394029
Merged-chr11-46312186-8	chr11	46311616	46312616	+	936.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252460, exon 1 of 31)	5' UTR (NM_001252460, exon 1 of 31)	242.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	4.24044167756343	4.42744201787343	4.14147391382041	4.44355177710251	4.11674478066539	4.11176727413334	-0.127741965965236	0.790150052390186	0.949368241827272
Merged-chr1-60941446-4	chr1	60940947	60941947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32422.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.64722049665021	5.76283120710066	5.95725708168599	5.70407920831682	6.10279983540456	6.14564789462264	0.3729978486403	0.248794415336859	0.645819769301048
Merged-chr2-71882684-2	chr2	71882201	71883201	+	596.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001360002, intron 3 of 10)	T-rich|Low_complexity|Low_complexity	7797.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	3.44184933840405	3.30931262317432	3.64868782345486	4.45048189262595	4.86476008937711	4.62969620128895	4.16127739262623	1.66947093023564e-10	2.12730991061328e-08
Merged-chr8-46763693-1	chr8	46763193	46764193	+	560.0	f0_balb.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	23948.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.91100005963431	5.18797302865796	5.34427009606186	5.31104123373519	4.98985987262167	5.31842512591884	0.112967906378329	0.767516717684716	0.942617496111852
Merged-chr6-34367544-2	chr6	34367044	34368044	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 9 of 9)	intron (NM_008012, intron 9 of 9)	13398.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	5.66678246758723	5.79514693499594	5.02092091070002	5.39590536395359	5.23083830624638	5.20120405560701	-0.523512019163465	0.181127213899815	0.563410587445824
Merged-chr12-110706988-4	chr12	110706490	110707490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	7.06802776685824	7.48006135499696	6.82478378172151	7.12831279095888	7.253415580698	6.92951441281852	-0.0715055255531217	0.802983746995943	0.953422605427866
Merged-chr9-59540803-3	chr9	59540356	59541356	+	809.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	ID_B1|SINE|B4	1316.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	7.14175450951986	7.56244228233795	7.26789781649067	7.48024042614887	7.87287465456494	7.32535873574172	0.36632835151437	0.182613219460479	0.565440922476101
Merged-chr19-32932766-4	chr19	32932266	32933266	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175189.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.60717774335988	3.7082006888085	3.54569511662463	3.77614637734394	3.34068216127568	3.87312526552249	0.176709181008047	0.766435784396414	0.942467872936068
Merged-chr6-48446128-3	chr6	48445647	48446647	+	928.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085417)	promoter-TSS (NM_001085417)	-322.0	NM_001355746	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	4.35315690171126	4.15241816846758	4.84145740301626	4.69149021804825	4.20700399903365	4.87213220435842	0.339318273760284	0.506885106836149	0.838606910757194
Merged-chr6-28490263-2	chr6	28489763	28490763	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	B3A|SINE|B2	9915.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	2.58431213300103	2.73181677210023	2.83513065507605	2.69510160122798	2.59469195039769	2.66425667087533	-0.366970728804965	0.624803158932735	1
Merged-chr15-80008055-2	chr15	80007555	80008555	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	MIR3|SINE|MIR	6753.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	2.93360120747739	2.99314292616217	2.97164966551423	2.79057581773856	2.82810942623062	2.98490145369706	-0.489964666810826	0.479100669146226	0.824031759856115
Merged-chr11-115631675-4	chr11	115631182	115632182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3387.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	7.91567082077814	7.54151511439331	7.51736272512403	7.94368536494298	8.01117583002667	7.79038064798307	0.351586476859253	0.145890078734728	0.509302356675446
Merged-chr4-40142389-1	chr4	40141889	40142889	+	754.0	f0_balb.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-876.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	7.56884876184927	8.2932302544219	7.57393553114816	7.74791368679111	7.9200947908666	7.54954114479303	-0.166323190358397	0.571963457410721	0.869773807126863
Merged-chr11-107391689-2	chr11	107391189	107392189	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B2_Mm1a|SINE|B2	79031.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	2.36761950207113	2.29576268755016	2.49968537780166	2.16920811668946	2.16186733130143	2.25561058671774	-1.3658482321514	0.119910089749445	1
Merged-chr9-120943885-2	chr9	120943385	120944385	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	10307.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	4.77324119021722	5.08149817463635	4.68074523122823	4.81439943598523	4.95869644755755	4.9053692527219	0.0632343210801746	0.874888067220495	0.970813891247597
Merged-chr9-104576323-1	chr9	104575823	104576823	+	747.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	6840.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.45210202531391	3.70437595810103	3.42576717347611	3.06401084863142	2.91007005490959	3.08372689583651	-2.34288242416073	0.000686688495980156	0.0134918480220819
Merged-chr17-26616935-3	chr17	26616417	26617417	+	907.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 3 of 9)	intron (NM_026170, intron 3 of 9)	55405.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.27503153683287	2.36635868303902	2.44965547394061	2.23467210168507	2.23478408301086	2.26775708146202	-0.809460375635333	0.34036877676883	1
Merged-chr7-28818165-2	chr7	28817665	28818665	+	693.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 6 of 12)	intron (NM_177301, intron 6 of 12)	-7173.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	3.47358859514687	3.22602962519555	3.85381223026037	3.58806949012814	3.39199186894661	3.92158543507711	0.375434675917886	0.558461164720226	0.86470601600403
Merged-chr7-45102321-2	chr7	45101821	45102821	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010189, intron 3 of 6)	intron (NM_010189, intron 3 of 6)	1501.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	4.89183801810355	5.0030566260244	5.53515173455649	4.91532204692333	4.6696513522475	4.76023110265947	-0.819792970271059	0.0523250175912338	0.292440896274273
Merged-chr10-75288774-4	chr10	75288265	75289265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-28112.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	3.87296349230063	3.88980723721366	3.83446961148445	3.87604629819802	3.73676487515173	4.09403758362423	0.102400013752114	0.843932961672135	0.963679834808661
Merged-chr14-103694526-3	chr14	103694026	103695026	+	702.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045148, exon 3 of 3)	non-coding (NR_045148, exon 3 of 3)	4906.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	2.40514808892741	2.52007062571032	2.21559407967517	2.42942591083474	2.26559383006037	2.68177291713639	0.48514084562259	0.587070644157152	1
Merged-chr13-81171483-4	chr13	81170979	81171979	+	927.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	207405.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.25820712185864	3.19866460867536	3.16670937573283	3.27369113850635	2.98069268097208	3.05812263493639	-0.434986244131845	0.506380280851716	0.83842879061576
Merged-chr7-142396293-2	chr7	142395793	142396793	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8423.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.27042975087075	4.94834363596148	5.29883166385691	5.5067990098706	5.46628281186565	5.39307750070592	0.563871116331073	0.110793335694166	0.444841551070303
Merged-chr16-91828510-2	chr16	91828010	91829010	+	830.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110276, exon 16 of 16)	3' UTR (NM_001110276, exon 16 of 16)	99139.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	2.87704661076405	2.83257801898136	3.07984628099455	2.83011485269116	2.86597029379085	3.36220948591139	0.480991589961943	0.509270798364581	0.84026772146894
Merged-chr13-82073561-4	chr13	82073071	82074071	+	995.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	290324.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	3.59552780547524	3.58915664262402	3.38008616513164	4.11663054029424	4.06200673908085	3.7539574895048	1.51373162788952	0.00824474157836627	0.0879072856551385
Merged-chr9-58580986-4	chr9	58580454	58581454	+	823.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	5.49013197331763	5.63354203820777	5.50083555820673	5.43183534432895	5.63792451010968	5.80110518303269	0.150847129326874	0.648043076874706	0.90166178452027
Merged-chr13-29855484-6	chr13	29854963	29855963	+	857.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308486, intron 1 of 5)	CpG	210.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	4.59607401645721	5.01868016853354	5.01845720947028	5.18563517018649	5.20007762902135	5.27753941071368	0.700573269663454	0.0709253701549534	0.349354592134896
Merged-chr2-166195215-4	chr2	166194704	166195704	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39521.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	3.9239413756765	3.56997179582264	3.98487168664368	3.91335986483286	3.93129989551437	4.00626322099547	0.360466433086149	0.498230050396782	0.833856267944725
Merged-chr2-22771554-4	chr2	22771050	22772050	+	787.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2777.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	2.68392167473967	2.67433840888516	2.68582913485691	2.81135300319466	2.65142931758165	2.82074798696462	0.421196448934605	0.565136968971003	1
Merged-chr13-43531548-4	chr13	43530937	43531937	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28754.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	5.77299327388322	5.3911812852542	5.53941752835942	4.75862192698602	4.68460150890898	4.67739846010278	-1.83360652704437	1.57549410524848e-06	8.06333010602912e-05
Merged-chr5-29388469-4	chr5	29388077	29389077	+	848.00415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	2.37611595427615	2.30635247912865	2.48423911392371	2.45481347908332	2.20539888150558	2.22957145970886	-0.569486894522967	0.507479162663656	1
Merged-chr11-118480880-4	chr11	118480352	118481352	+	746.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 3 of 13)	MTA_Mm|LTR|ERVL-MaLR	4020.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.98619449572686	4.94065083328061	5.07890714362689	4.81849890930682	5.06346479315291	4.65043290278955	-0.280158701817643	0.481353702653671	0.825051423272229
Merged-chr12-70453080-4	chr12	70452569	70453569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028339)	promoter-TSS (NM_028339)	-85.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	6.18315071119907	6.71036724945113	6.45432209790846	6.48192816767379	6.63603257420215	6.6177645206898	0.175771013013793	0.546067945485812	0.85849711034619
Merged-chr7-100943489-4	chr7	100942977	100943977	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	LTR108c_Mam|LTR|ERVL	-11316.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	5.77391215424131	5.60167396948678	5.27441175890602	5.43771784427239	5.60648775022044	5.37273388974916	-0.178584771490771	0.610893326367858	0.885849400663435
Merged-chr2-102876345-4	chr2	102875853	102876853	+	871.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	MIRc|SINE|MIR	25312.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.49291650210059	4.59531124967826	4.23483777191026	4.67072930902661	4.67065091790253	4.53736717222366	0.416530421478	0.3400896940912	0.729693139478955
Merged-chr9-118696379-3	chr9	118695952	118696952	+	749.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-15240.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.61817482230813	3.65564275815461	4.03000942886848	3.63758673745865	3.34454350163485	3.92030016661313	-0.422419937027892	0.483839656964307	0.826584678003739
Merged-chr6-30076357-1	chr6	30075857	30076857	+	1000.0	f0_balb.idr	promoter-TSS (NM_001164229)	promoter-TSS (NM_001164229)	36.0	NM_001164229	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	2.2178444008634	2.27161556939353	2.3202542192528	1.99124152596348	1.90863081797692	2.20142655562837	-1.93799768871045	0.0529546333359157	1
Merged-chr17-35198884-2	chr17	35198384	35199384	+	601.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001278601)	TTS (NM_001278601)	3123.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	3.18912695582864	2.78539190399773	2.74047459565059	2.88563745803636	2.64681806964726	2.94227410923527	-0.471162211635649	0.538613505692455	0.855318000336994
Merged-chr1-65187669-2	chr1	65187169	65188169	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	984.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	5.5335329669459	5.96153456777787	5.87089848028062	6.02344513432564	6.11487951862988	5.90806170709236	0.393144349577828	0.2162523525742	0.609708172523565
Merged-chr17-75119652-4	chr17	75119147	75120147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019919, intron 3 of 33)	intron (NM_019919, intron 3 of 33)	-59134.0	NM_001331236	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	2.15927607910375	2.05442144988177	2.1782750072966	2.25559024777082	2.12512791257659	2.50864842409892	1.19705212164145	0.18508175716996	1
Merged-chr4-48109304-1	chr4	48108804	48109804	+	821.0	f0_balb.idr	Intergenic	Intergenic	-15615.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	4.7455018559348	4.87370334118991	4.35525516292356	4.67662959850018	4.92400525703275	4.73687883356151	0.228285885268109	0.600255340685561	0.881551200871281
Merged-chr6-5006772-4	chr6	5006254	5007254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	103434.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.14688485881259	6.13940218704164	6.01256162743846	5.99547900438478	6.38618946539412	5.95370977637097	0.062415334367558	0.838913963572642	0.962619500530269
Merged-chr10-93262356-4	chr10	93261808	93262808	+	838.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	48851.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.5956938950874	5.45433464376224	5.96667789117529	5.74620997480661	5.75203979450759	5.55340697070829	0.0297198783370704	0.930266030536758	0.984485771257693
Merged-chr6-37223934-4	chr6	37223449	37224449	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76027.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	6.37898179293275	6.69260738135787	6.59763167353134	6.0101523348728	6.58436840804657	6.43147276386201	-0.31094507250128	0.310592636392159	0.705960229701671
Merged-chr2-34906987-4	chr2	34906487	34907487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 4 of 14)	intron (NM_028716, intron 4 of 14)	6989.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	6.27922373349314	6.45387707086638	6.70544252121636	6.06264785903746	6.40385869895945	6.38381260128799	-0.309382448595506	0.297917514445136	0.694723405132865
Merged-chr6-6955929-4	chr6	6955426	6956426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077713)	promoter-TSS (NM_001077713)	-92.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	5.26608779494266	5.44798719299655	5.4284066701954	5.26963274670945	5.38366013886241	5.20970792969917	-0.1676847511645	0.62591457770294	0.892762743739072
Merged-chr4-16162668-2	chr4	16162168	16163168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	975.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.85737857966285	6.1697966038641	5.83915515434963	6.21269114268895	6.48452560879879	6.42043616212521	0.683180831531287	0.0232172049782819	0.178255782842501
Merged-chr5-115555378-2	chr5	115554934	115555934	+	806.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133915, exon 12 of 12)	3' UTR (NM_133915, exon 12 of 12)	-4033.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.0241408905999	2.73160740197659	3.34720590039851	2.92544899594264	2.82059588031431	3.36674425486113	0.00356894027083926	0.996286102915153	0.998961028701257
Merged-chr2-164837837-2	chr2	164837337	164838337	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 11 of 14)	intron (NM_001038492, intron 11 of 14)	4064.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	3.28429957124654	3.11876879960352	3.32872090233734	3.06861324211507	3.00321702280625	3.11847713158183	-0.800818288761951	0.217165108980025	0.610881487086205
Merged-chr7-99159033-4	chr7	99158503	99159503	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026384, exon 5 of 8)	exon (NM_026384, exon 5 of 8)	-17859.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.59165567828729	3.2818508730155	3.2551944264864	3.33770150973069	3.13755725889893	3.44118910443689	-0.330686178006995	0.602667450238125	0.882397657327329
Merged-chr9-118622113-2	chr9	118621613	118622613	+	755.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	15404.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.83128320829608	3.8984635464209	4.0810662964157	3.69648097876638	3.8643941018335	4.01266814782287	-0.232541237703828	0.655537398581599	0.90429384180742
Merged-chr15-77614165-1	chr15	77613665	77614665	+	717.333313	f1_balb.idr	Intergenic	RLTR14-int|LTR|ERV1	-18040.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	2.84953579254299	2.73696146340624	2.65278183943322	3.07288953346685	2.89265251145998	3.42886101709105	1.87795929524967	0.0151456683579055	0.13356815884435
Merged-chr10-20724513-4	chr10	20724006	20725006	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	572.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.01949756629575	7.41387540121783	6.90436265875899	7.47880946997636	7.75926384342032	7.14687215355672	0.525594439004851	0.0702624755996913	0.347214637706326
Merged-chr6-83584273-3	chr6	83583761	83584761	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 7 of 7)	intron (NR_078345, intron 7 of 7)	-11757.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	3.34868469082416	3.21108639781698	3.32057111927768	3.16578588668676	3.40470529675326	3.2195708954728	-0.0794361495415768	0.898978690634583	0.976432549466174
Merged-chr12-111670516-2	chr12	111670016	111671016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 5 of 7)	intron (NM_021273, intron 5 of 7)	1822.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	5.72180486145657	5.87989887775649	5.75006367477325	5.89924983700442	6.19182234635657	6.05375741437142	0.474209432298775	0.118954349613578	0.461021248053436
Merged-chr19-55234395-2	chr19	55233895	55234895	+	721.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6841.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	3.42478108113895	3.49945217829196	3.41202318351456	3.56158945602679	3.64544194261625	3.69736360519853	0.67513327816776	0.233072861491713	0.629455587763793
Merged-chr2-173743751-2	chr2	173743251	173744251	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	B3|SINE|B2	6180.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	3.07688701436262	3.08984784441644	3.19771044788043	3.26797295800326	3.00052575205943	3.53363571191861	0.655809267446459	0.326345585028415	0.718659876645344
Merged-chr3-138522037-5	chr3	138521457	138522457	+	915.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4234.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	6.50311073808531	6.82846137724169	6.61873637724115	6.82801027871062	6.82920002266542	6.87915579980779	0.286398293285267	0.271612315141249	0.6689720175125
Merged-chr6-112091118-6	chr6	112090654	112091654	+	954.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119554.0	NR_027865	67336.0	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	4.14486996624049	4.40231741123133	4.05909815660279	4.02832913834023	3.96650672008358	3.7549429059023	-0.839065389297663	0.10179256969557	0.425710869100299
Merged-chr3-40529091-4	chr3	40528584	40529584	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6172.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	2.9457549830854	3.02421961094614	2.95249457166938	2.95065713971277	2.78631142950615	2.7078357496334	-0.763921508294971	0.286453170483182	0.683720931974546
Merged-chr19-55840967-4	chr19	55840468	55841468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-54353.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.56920265481468	5.14348747367919	5.40156378158638	5.33254195998471	5.13936872966135	5.43519437623756	-0.165513028985144	0.649195832859023	0.902118776529041
Merged-chr1-152537511-2	chr1	152537011	152538011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	87706.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.34748111961266	5.39704380814018	5.43811782557154	5.2044050879166	5.04941622376615	5.05100807435856	-0.585089937983476	0.0933872209069582	0.407088157154892
Merged-chr17-6978799-4	chr17	6978311	6979311	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026611).2	promoter-TSS (NM_026611).2	-49.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	4.57444611071693	4.5251123055461	4.13969710635021	5.5579848252019	5.4836893262216	4.81643891758253	1.97325122864084	3.89111393207677e-05	0.00128277261513567
Merged-chr5-20702094-11	chr5	20701671	20702671	+	951.4772949999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170745, exon 21 of 21)	3' UTR (NM_001170745, exon 21 of 21)	179953.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.30859045085619	4.20390540472181	4.28605371107201	4.52474104394232	4.25742858307792	3.95434056396468	0.0205345508114318	0.966511191153972	0.992318533062777
Merged-chr3-108855073-2	chr3	108854609	108855609	+	594.5	f0_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-14607.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	5.70050739801828	5.09554545868653	4.91292268922381	5.97711378853951	5.79670021180883	5.52188266614984	0.909889757490774	0.0266298551489253	0.194165526396055
Merged-chr1-9797302-4	chr1	9796845	9797845	+	915.339294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	-785.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	6.58425344429689	6.88453322874188	6.38970954771715	6.5888551997328	6.90860331344512	6.73332006102078	0.169873790917342	0.553320086692519	0.86224512118178
Merged-chr8-61581495-2	chr8	61581002	61582002	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	9667.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.58378295663788	3.66389858976442	3.99291390146594	4.56353363021675	4.47330721151214	4.38696703523201	2.18840513116303	2.25095264905376e-05	0.000808012372832032
Merged-chr11-31890188-1	chr11	31889688	31890688	+	628.0	f1_balb.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	19248.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	5.25287220458427	5.68382031705236	5.13728032277873	4.90116901083477	4.80376351414704	4.69489890826994	-1.22670678204079	0.00208579503863799	0.031903490575102
Merged-chr13-113612134-2	chr13	113611634	113612634	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6430.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.39988692905179	4.44407798293889	4.22422989271029	4.5136037617893	4.36592991041503	4.7138508735799	0.410967469834975	0.35942867766376	0.745651634571945
Merged-chr2-144267088-2	chr2	144266588	144267588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030762)	promoter-TSS (NR_030762)	-886.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	7.25074670850231	7.6521684827099	6.88331306042555	7.50936912605445	7.98982710049242	7.12001136867169	0.423678188139714	0.203846739059213	0.594062743893213
Merged-chr12-75765975-4	chr12	75765484	75766484	+	755.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30255.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	4.01959407852266	4.25450365511455	4.34349236302019	4.18671911574844	3.92352998011475	4.19375738717447	-0.304743618481937	0.533949984359942	0.852777001391163
Merged-chr8-13646896-4	chr8	13646380	13647380	+	956.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	30707.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.66327012134188	5.73312529890051	5.59016927969409	5.79869547258931	5.59898666820459	5.16343708818984	-0.199859767521525	0.572417444345944	0.869840399318717
Merged-chr7-127200180-2	chr7	127199680	127200680	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 5 of 8)	intron (NM_144522, intron 5 of 8)	-4103.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	2.53277522502439	2.55866878656373	2.62592644861897	2.65154988538731	2.39084816636482	2.69948001334052	0.064868919858361	0.934380391862671	1
Merged-chr11-74898029-4	chr11	74897530	74898530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-50.0	NM_177325	104662.0	Mm.220843	NM_177325	ENSMUSG00000038335	Tsr1	AU040765|AW550801|mKIAA1401	TSR1 20S rRNA accumulation	protein-coding	6.30630132951134	6.60302851851323	6.50944060752011	6.45621734773038	6.53915453158974	6.44278073466221	0.00747296185171188	0.978042143151171	0.994994154947079
Merged-chr13-98263114-4	chr13	98262639	98263639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178918)	promoter-TSS (NM_178918)	63.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	8.75240866919523	8.90851598238892	8.44873261583932	8.6150524118941	8.79583647925496	8.38542579840679	-0.147934830466666	0.53548259045287	0.853563387841999
Merged-chr11-63138918-4	chr11	63138427	63139427	+	797.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	6124.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	3.35228530221462	3.24005390495448	3.43000451456314	3.2531854572942	3.19658932491445	3.22234898841515	-0.471951905740567	0.44314353394797	0.803662801744639
Merged-chr12-40036694-3	chr12	40036187	40037187	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007487, exon 2 of 2)	exon (NM_007487, exon 2 of 2)	689.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	5.17803430993066	5.56044453736519	5.36792894332726	5.12833758164831	5.34651673432227	5.06624525781038	-0.367833661383807	0.317429570860249	0.711302795223616
Merged-chr4-46536594-1	chr4	46536094	46537094	+	893.0	f1_balb.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	-453.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	5.03178929386518	4.61235160251182	4.96555454094852	4.97879572155538	4.33256561619437	4.77661035756899	-0.365364335577092	0.422278236697526	0.791122788290353
Merged-chr5-147574709-4	chr5	147574221	147575221	+	894.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010228, intron 25 of 29)	intron (NM_010228, intron 25 of 29)	144565.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	2.31221348225724	2.48893487915827	2.42099660974989	2.48820826525915	2.54453879963307	2.68373697581847	0.980293458452459	0.226406231241317	1
Merged-chr12-85228670-3	chr12	85228102	85229102	+	937.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9121.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	4.0644496622753	3.92278656077268	4.01720675449521	3.63578663134507	3.64561440164121	3.56833034036236	-1.25088638545026	0.019735734296066	0.160057844166739
Merged-chr17-35136771-2	chr17	35136271	35137271	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	intron (NM_001252469, intron 2 of 23)	1057.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	4.59273555807025	4.5004039551221	4.40656565832664	4.76673527586463	4.53076215170754	4.6455936798861	0.341435788248284	0.419019725092529	0.788801788481746
Merged-chr10-99107577-2	chr10	99107077	99108077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	495.0	NR_153333	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	6.5985072565674	6.61757323233028	6.25807756933218	6.66798981768989	6.56049569916144	6.68698500793884	0.195694715572733	0.47386153319484	0.821131043651886
Merged-chr3-81102342-4	chr3	81101824	81102824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	65908.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.52012705565959	6.65987000742122	6.54404946548456	6.57050182151218	6.67203362907035	6.65373804835239	0.0875202780388373	0.733776837973191	0.932268111129195
Merged-chr4-150012731-4	chr4	150012242	150013242	+	997.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-3719.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	6.57611846369095	6.62407927844662	6.87888624409672	6.73409124840623	7.07217374567345	7.06875108856562	0.42945547960525	0.10979933589649	0.442923505176474
Merged-chr10-12956735-2	chr10	12956235	12957235	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	7524.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	4.75552353508982	4.42759902738588	5.04125811653889	4.72410658510355	5.00295525198298	4.8658479529008	0.26973757873503	0.532367007088838	0.851971173271146
Merged-chr19-46338713-4	chr19	46338189	46339189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-29.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	7.45608967518984	7.43034071683034	7.27659216996975	7.53101699382946	7.81337508869744	7.09018653004314	0.192978338650712	0.484332929107798	0.826794432521042
Merged-chr15-6555735-4	chr15	6555218	6556218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24129.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.68142409772224	6.68528881311919	6.77455725566897	6.85192306397021	6.60666714413945	6.84760023183772	0.0874329345132153	0.733971301420733	0.932325051544019
Merged-chr18-9508574-4	chr18	9508074	9509074	+	887.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCTG)n|Simple_repeat|Simple_repeat	-58420.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.6573813894731	4.43337413586736	3.99521236592455	4.42064499663238	4.45367667006752	4.06857839379222	-0.172527261787118	0.738392504517594	0.934032187674406
Merged-chr14-30827580-4	chr14	30827056	30828056	+	763.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1962.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	4.8707446743253	4.66357912506675	5.08625665424188	4.82683168371753	5.13003008589406	5.35918051703209	0.521281956769248	0.201672407840617	0.591183995476557
Merged-chr5-135951940-3	chr5	135951396	135952396	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17255.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	4.21847479829932	4.29227984891983	4.23507508625396	4.18320468749598	4.20313863044924	4.34661258183294	-0.0246795052932633	0.956825360169156	0.989887454023164
Merged-chr6-145308498-2	chr6	145307988	145308988	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57936.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	4.7672438165519	4.5634313589816	4.67418541823266	4.91534555197367	4.85982241271743	4.96547204168256	0.547560366447608	0.164501032648409	0.539102084466673
Merged-chr1-52726922-4	chr1	52726436	52727436	+	991.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357464, intron 1 of 7)	CpG	382.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	2.78638309843461	2.67751071628117	2.8150801823924	2.97763183303	2.40656013857099	2.70045322362647	-0.215820241086025	0.792819633203949	0.950054524815792
Merged-chr9-118706827-2	chr9	118706330	118707330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-4862.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.03066286343649	6.10965535084186	5.95234821343889	5.84606340075115	6.06713736938269	5.84100882167907	-0.183357761006661	0.539641814490247	0.856052391666911
Merged-chr3-146498808-4	chr3	146498230	146499230	+	806.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316756, intron 1 of 14)	B3A|SINE|B2	1023.0	NM_001316756	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	6.15708138055474	6.30606301357862	6.16437820026844	6.16181691493431	6.38517996732266	6.02152662551563	-0.00489185429615391	0.986639753320499	0.997070852223121
Merged-chr2-169929845-5	chr2	169929342	169930342	+	850.3133539999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33345.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	5.47084020954043	5.48560689104507	5.75025028786176	6.259862098168	6.56359395138735	6.34231890365397	1.46083373260071	1.6237409115397e-06	8.26350053623213e-05
Merged-chr5-45496719-2	chr5	45496219	45497219	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 2 of 12)	intron (NM_024434, intron 2 of 12)	3345.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	3.41173087971199	3.37374811086417	3.36058128296458	3.24766743675772	3.38233367324502	3.19872853881962	-0.38762758865055	0.526386835366427	0.849421995911288
Merged-chr9-123986296-4	chr9	123985813	123986813	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7905.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	5.19633537699189	5.13954959848353	5.15106609354613	5.10814698063829	4.84782318803768	5.18236005887561	-0.253697691359277	0.492631340110053	0.831177181177099
Merged-chr17-34586966-2	chr17	34586466	34587466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010929, intron 28 of 29)	CpG	-2840.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	7.22383365127526	7.16308851416719	6.60389943774484	6.87164352470109	7.30352837019789	6.98369313915313	0.0545780447625434	0.85419344118561	0.965960851905444
Merged-chr11-85715165-6	chr11	85714599	85715599	+	877.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	4645.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.85747955648245	4.94933144619196	4.95359244168029	4.43193439470719	4.46143591780379	4.60637887208917	-1.0006491712754	0.0134774034543017	0.12355969442767
Merged-chr2-148498019-3	chr2	148497514	148498514	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54479.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.49197925291998	3.40095581142533	3.55290621905431	3.44849715343036	3.05317706518363	3.67292406726653	-0.264137635490911	0.68414489285476	0.915773756389094
Merged-chr5-24781707-2	chr5	24781207	24782207	+	804.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23864.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	3.49204560725713	3.43633014775439	4.21598578404616	3.84779655137787	3.82029439216106	3.63480876167179	0.0344358627336184	0.956135667905597	0.989807313282509
Merged-chr6-22459640-3	chr6	22459139	22460139	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48B|LTR|ERV1	-103558.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.04162522053218	4.18067424259781	3.94265891030734	3.90592140700948	3.85166603184167	4.28643745873986	-0.13329076578761	0.795743327195504	0.951283863759945
Merged-chr2-3727823-4	chr2	3727332	3728332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	14374.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	6.71297593381721	6.67945126848484	6.00954546778621	6.20730386704466	6.10065845068604	6.16571467201718	-0.596206917091711	0.0618984911209959	0.323013461849848
Merged-chr9-53386923-4	chr9	53386420	53387420	+	968.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	intron (NM_212445, intron 1 of 7)	2897.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	7.53617596365424	7.7230299056289	7.29831932076877	7.43812477715039	7.76604672281884	7.38920703906176	0.018082953870026	0.944064104463096	0.987537695696339
Merged-chr7-45591517-2	chr7	45591017	45592017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16341.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	6.69459567686919	6.63528389564912	6.10693774166943	6.67941845503237	7.10114279587219	6.67174587178404	0.509900508156016	0.102540011339546	0.427066706837844
Merged-chr14-103115555-4	chr14	103115067	103116067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 84 of 84)	intron (NM_207215, intron 84 of 84)	-16001.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	3.6438469740856	3.71624341397768	3.71660639340548	3.71629125306171	3.56796100223149	3.57343752374057	-0.244525017306443	0.654245272120203	0.903721536896116
Merged-chr5-115632409-2	chr5	115631909	115632909	+	998.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	422.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	5.13260414409183	4.82261816733784	5.40718906455756	5.22737606472273	4.88154933028652	5.07192760113016	-0.141385172474988	0.725402555019006	0.929691574733865
Merged-chr3-127498371-3	chr3	127497875	127498875	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	740.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.99826683807489	3.92704397834188	4.29378728797314	6.08236542277736	6.09190160005471	5.33735675177613	4.42446147131217	2.93274397704625e-18	1.487974151476e-15
Merged-chr5-76588715-4	chr5	76588185	76589185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3029.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	6.00919243734483	5.5169270965093	5.62290687431762	5.97908998702252	5.544352952097	5.93962854889972	0.159613270997732	0.650296188850751	0.902576889668442
Merged-chr1-171504164-4	chr1	171503671	171504671	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019484, exon 1 of 1)	exon (NM_019484, exon 1 of 1)	693.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	7.85636403324957	8.14235136894257	7.94853621010098	8.0875355604141	8.17052509562127	8.12741012153658	0.197123917926572	0.364825673659097	0.750028369485675
Merged-chr10-81551721-4	chr10	81551187	81552187	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6641.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	3.49071654957477	3.26552353830099	3.62216706673875	3.29608591903582	3.17319323224762	3.54086937538733	-0.47962075513496	0.443616034427224	0.803884349333946
Merged-chr17-7945866-4	chr17	7945347	7946347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025789, exon 1 of 8)	exon (NM_025789, exon 1 of 8)	233.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	6.19842085160107	6.40340756970721	5.98506391195197	6.26802412023468	6.08836848110118	5.94803041035871	-0.17673932499488	0.560930890522339	0.865341742006096
Merged-chr2-154612481-2	chr2	154611981	154612981	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	-887.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	5.67117782608869	5.99087986518165	5.71721385443292	5.32993711932298	5.79422418132865	5.61686625781236	-0.371807517088494	0.279513004184891	0.677205609521119
Merged-chr14-121995003-4	chr14	121994516	121995516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-29823.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	5.66867182102794	5.46186749092636	5.22452961464784	5.51807242806428	5.69738554487839	5.32419797242999	0.111153666540959	0.754827571295537	0.939123558849015
Merged-chr17-5190236-4	chr17	5189744	5190744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195170.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	7.33621362779609	7.52715641544924	7.51360473236519	7.29337117998247	7.4503175822661	7.22250566726526	-0.189206216748035	0.421032112295412	0.790122251976347
Merged-chr14-31571207-2	chr14	31570707	31571707	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	MER5A|DNA|hAT-Charlie	6176.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	2.54142107232907	2.47157039971343	2.63422702603473	2.56883066353967	2.59681911485618	2.70726193688473	0.437078667501995	0.56760393873817	1
Merged-chr1-54795461-4	chr1	54794979	54795979	+	987.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	MTD|LTR|ERVL-MaLR	130908.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.58985716926195	4.41352727106785	4.161588073973	4.23423889068855	4.07805571319603	4.18247183360563	-0.662646170945926	0.160650831538633	0.53337460660229
Merged-chr2-181278043-4	chr2	181277540	181278540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198169, exon 2 of 10)	exon (NM_198169, exon 2 of 10)	9926.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	4.80865026856885	4.90708818102875	5.0975540036339	5.24638680579316	5.32450452406527	5.3794557047737	0.799010317470124	0.0277121326025171	0.198730598085861
Merged-chr13-111924651-4	chr13	111924151	111925151	+	868.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56715.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.22816651866825	3.43216411161852	3.40905508513423	3.09311934896768	2.8172084217367	3.14526153289086	-1.51443584698725	0.0279640112323495	0.199779294807361
Merged-chr7-103762396-3	chr7	103761903	103762903	+	729.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5053.0	NM_147098	259102.0	Mm.377844	NM_147098	ENSMUSG00000050281	Olfr630	MOR17-1	olfactory receptor 630	protein-coding	2.4262282363934	2.40411125734259	2.50314151084555	3.26285531449775	2.95607769417115	3.04204156432929	4.76571894831208	2.97105456387588e-05	0.00102028686814273
Merged-chr7-122459383-4	chr7	122458864	122459864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170239.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.17941632668936	5.7904798688956	5.35691842207249	5.57142306900902	5.31833004906956	5.67640363109157	0.0866297050194291	0.81838393717607	0.956943376117853
Merged-chr9-106236285-3	chr9	106235793	106236793	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 9 of 10)	intron (NM_020559, intron 9 of 10)	11437.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	3.56705892250997	3.57708927514838	3.80749372643741	3.79867289214747	3.35450146173568	3.39547789741045	-0.410106389764188	0.495070674420754	0.832258300794288
Merged-chr1-88241740-1	chr1	88241240	88242240	+	614.5	f0_balb.idr	intron (NM_001281466, intron 19 of 41)	intron (NM_001281466, intron 19 of 41)	14720.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.6010079443714	3.90320071391245	3.54270139273015	3.48216854910958	3.62662516136974	4.14443303730647	0.260311159491619	0.670021272706989	0.909877715716983
Merged-chr17-27622302-2	chr17	27621789	27622789	+	707.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	675.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	5.85887757728629	6.03850985616613	6.12330009696799	5.90762240987563	6.00501331236677	5.89074478869755	-0.115094257444082	0.699201437328042	0.920527090870412
Merged-chr12-99559614-2	chr12	99559114	99560114	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.34738831291668	3.71480219765462	3.76394991310274	3.79585995092986	3.90476839377294	3.78298758170732	0.70866594750587	0.212196760072586	0.604611444444739
Merged-chr17-42943616-4	chr17	42943106	42944106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67182.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.77837954191093	4.2949080121939	4.56400938146872	4.96540163203432	4.52762393899884	4.96951149944929	0.623882013342683	0.168934693364458	0.545531802905646
Merged-chr10-57759173-4	chr10	57758692	57759692	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25731.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.24624131930633	4.83438604088414	5.14865239777302	4.9097663161184	5.11350697787241	5.0087045285353	-0.144300233911305	0.7092431484975	0.923935571500538
Merged-chr10-85387746-5	chr10	85387192	85388192	+	688.76001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028709, exon 1 of 17)	exon (NM_028709, exon 1 of 17)	878.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.16140199647414	3.2151501034062	3.54599195031737	4.74277628494143	4.71646218237074	4.13568530120105	5.10929071099763	1.1144093062149e-09	1.22010223094118e-07
Merged-chr17-27822660-2	chr17	27822106	27823106	+	824.349976	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2064.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	3.33871455258918	3.27636119619318	3.28040235178827	3.16884104279358	3.00265412674189	3.29577318771624	-0.617041159695763	0.333595035815329	0.724494720400407
Merged-chr9-108492225-3	chr9	108491724	108492724	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168373, intron 1 of 26)	intron (NM_001168373, intron 1 of 26)	1548.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	3.87304650046734	3.97411242303729	4.26396012318597	4.44812195397877	4.56142620368838	4.61816604578558	1.37887468467848	0.00346906679579108	0.0468967397793312
Merged-chr17-78249154-4	chr17	78248647	78249647	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48899.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.33406109384916	5.25840481942482	4.8891626468117	5.29382348175502	5.30165639739432	5.24777695125261	0.190240673616584	0.604993680128112	0.883330817515343
Merged-chr6-114648774-4	chr6	114648286	114649286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	5689.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	7.70285435360231	7.82428006160602	7.53528702171426	7.59347880447236	7.84372822680357	7.62117878251848	-0.00310663388994121	0.989386662615772	0.997597007948949
Merged-chr3-145928179-3	chr3	145927766	145928766	+	632.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	MIRb|SINE|MIR	4004.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	3.34823793039771	3.26095250775403	3.66971829031063	3.15198957941559	3.24591614231177	3.69082679665427	-0.205552461648945	0.753838729951956	0.938570691167124
Merged-chr16-43454696-2	chr16	43454196	43455196	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-34500.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	2.41032134166343	2.55255567749893	2.55737499787451	2.38626343694301	2.2068551540269	2.44172728235566	-1.06478333949376	0.208080108867346	1
Merged-chr1-183294812-4	chr1	183294296	183295296	+	929.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151660, exon 2 of 13)	non-coding (NR_151660, exon 2 of 13)	-2264.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	3.70833530845578	3.59347625967284	4.04276542961209	3.81090892993722	3.96517372083836	3.61663542114277	0.0846101950536267	0.881178035548803	0.97262624933271
Merged-chr7-118120194-2	chr7	118119694	118120694	+	850.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019419, exon 6 of 6)	3' UTR (NM_019419, exon 6 of 6)	-4047.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.61480027303654	4.6017086531161	4.65562723516165	5.16442161748561	5.09882854332575	4.84429661274016	0.964314155655903	0.0140542117259555	0.12716646904016
Merged-chr12-119386980-2	chr12	119386480	119387480	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56430.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	4.33393875421029	4.38172683086893	4.01472537155177	4.518697967874	4.61215514439998	4.33900998408253	0.610596222586179	0.192708990593731	0.579693140399516
Merged-chr9-69990754-2	chr9	69990254	69991254	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	1288.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	5.05317714482281	5.07908440232021	5.30934851813518	5.04575479934756	5.19072199133121	5.01323450917469	-0.105171623026306	0.774615002234369	0.944485094095756
Merged-chr1-58741985-2	chr1	58741485	58742485	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	11433.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.10459151055969	6.4445148301362	6.44252863489826	6.37512082053073	6.43841458292021	6.33385737744432	0.0819079120209313	0.772402865880656	0.943716660313239
Merged-chr9-21014824-4	chr9	21014345	21015345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1095.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	6.23931350025748	5.64204620418075	6.35272603133771	6.16218830372324	6.04305852938556	6.18242059059234	0.0351923532022254	0.916544625225007	0.981312252061916
Merged-chr17-33782690-1	chr17	33782190	33783190	+	707.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	-1115.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	3.94839662206313	3.78122344328563	3.91141356475593	3.69626347932434	3.3443728816335	4.02581656073537	-0.551709615358561	0.35282773526647	0.740329823404675
Merged-chr15-79455015-4	chr15	79454511	79455511	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12868.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	5.29663731134745	5.18541953143123	5.00967396970069	5.25570393500305	5.56324189055585	5.0382105887828	0.287775751485825	0.449784467548863	0.808012616706586
Merged-chr17-57198457-4	chr17	57197958	57198958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4277.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	3.1984029963203	2.94026995897723	3.03883916086976	3.17333163628199	2.79708150056306	3.2829365752994	0.140934308131551	0.842955407984726	0.963230717210186
Merged-chr7-101900853-4	chr7	101900348	101901348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 3 of 3)	MIRb|SINE|MIR	2937.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	7.85362540006014	7.92674153470897	7.43423038256211	7.86311525419921	7.99927178615934	7.68476683690089	0.137349432766043	0.584769348065401	0.87470990551038
Merged-chr6-113674685-2	chr6	113674185	113675185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 5 of 11)	intron (NM_001113553, intron 5 of 11)	-22365.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	2.43796235567854	2.33388032781837	2.35779557303002	2.42744231475344	2.32452284339304	2.62199096086207	0.50161549551359	0.542469733067137	1
Merged-chr5-90747351-4	chr5	90746859	90747859	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	3.03191680238381	2.94919587547686	3.57130013015269	3.0522027129689	2.83016890298449	3.39715230134864	-0.404910565425915	0.587231025449839	0.875769926947203
Merged-chr5-74056323-2	chr5	74055823	74056823	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177561, intron 1 of 8)	intron (NM_177561, intron 1 of 8)	12088.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	2.6524802422316	2.40081622383195	2.65258657107866	2.90275031764603	2.69791432278022	2.79007294869066	1.25614678806428	0.111019119807574	0.445047839168872
Merged-chr14-66237573-2	chr14	66237073	66238073	+	644.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-23749.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.93256751548658	3.88377640077049	4.16555665159579	4.12774537338288	3.79593923495114	4.18902403879564	0.141675317221088	0.783690713394574	0.947273157369161
Merged-chr16-23284627-4	chr16	23284140	23285140	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5830.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.65340298034736	4.58906215686438	4.44508530703768	4.40132616299189	4.4574716644839	4.42441969905287	-0.354958056596586	0.405847735361255	0.780439975167702
Merged-chr18-62038214-1	chr18	62037714	62038714	+	554.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	85139.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.64614700490407	5.09831645552443	4.89050098069891	5.04133709721846	4.83286325750749	4.6116412796832	-0.876934490024038	0.0457930346096535	0.270390776596654
Merged-chr10-128549830-2	chr10	128549330	128550330	+	856.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-662.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	4.05447120730286	3.9112345421598	4.00783766826673	3.9915867862534	4.15117059866198	4.21419348401394	0.378298634736015	0.436965163360966	0.799714006663132
Merged-chr9-60481470-2	chr9	60480970	60481970	+	879.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	29565.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	3.32526979904918	3.11689239377786	3.6314546269325	3.11180029014597	2.93348209508344	3.55643119459508	-0.579466326612403	0.41434979644602	0.785785276982346
Merged-chr4-150730422-4	chr4	150729929	150730929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78255.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.72413666382373	4.35859861671367	4.76203076411804	5.08244914318646	4.35369651991024	4.7903168414853	0.35016463816331	0.458759551875244	0.813236440920954
Merged-chr11-11772971-2	chr11	11772471	11773471	+	824.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001301868)	TTS (NM_001301868)	35991.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	3.33806222332884	3.84562157025876	3.74552818234924	3.65852979430134	3.09633658598543	4.04378817531683	0.00776702004477808	0.991238657384262	0.998220732016915
Merged-chr6-56795025-2	chr6	56794525	56795525	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145958, intron 1 of 3)	intron (NM_145958, intron 1 of 3)	2188.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	4.00166139747006	3.79089417822769	4.04064710720416	3.78082149439495	3.94076867413179	3.86758824864264	-0.236775328506371	0.645912410621422	0.900777348480444
Merged-chr12-100421185-3	chr12	100420640	100421640	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	99682.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.68647126266129	3.93513885922559	3.82305465273988	3.58743822854129	3.81946133860161	3.94046923660037	-0.103782648265217	0.848177986309361	0.964318271116593
Merged-chr8-80240105-3	chr8	80239610	80240610	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182102.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	2.83205466146671	2.88142496234898	3.08502808535277	2.73314200370622	2.79497004617469	3.15585043609467	-0.150318027604696	0.83642854222432	0.962001762335242
Merged-chr8-10924651-4	chr8	10924143	10925143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030715, exon 3 of 3)	non-coding (NR_030715, exon 3 of 3)	3814.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	6.112716043288	5.79351294782314	5.9704252493661	5.61744489495439	5.67656191855135	5.47580207330254	-0.657033855390172	0.0397475220323733	0.247924423783337
Merged-chr7-16902112-1	chr7	16901612	16902612	+	819.25	f0_balb.idr	Intergenic	Intergenic	-4378.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	2.77991864150227	2.5179410325995	2.7444421049907	2.5690331105878	2.56362592253791	2.69532072034596	-0.426529362377052	0.57869920909266	1
Merged-chr6-87517273-4	chr6	87516778	87517778	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	15981.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.62521097667974	5.62897723566686	5.88551285894412	5.63332452123685	5.71680461105017	5.64678487263287	-0.0734859806840361	0.816807293095184	0.956754861188725
Merged-chr1-171387309-1	chr1	171386809	171387809	+	882.0	f1_balb.idr	3' UTR (NM_027893, exon 9 of 9)	3' UTR (NM_027893, exon 9 of 9)	-1651.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	3.34513339353514	3.12399677534634	3.25846177371586	3.27030768596571	2.92305446141193	3.27383578410839	-0.35703357515249	0.591688436801901	0.877718735408096
Merged-chr4-139203581-4	chr4	139203080	139204080	+	955.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	ID_B1|SINE|B4	9469.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.91331309639629	5.65762854628542	5.91692926449	6.36641888689772	6.286547964716	6.18091433810457	0.780347456072831	0.00812568558257099	0.0869834100031606
Merged-chr2-165860432-1	chr2	165859932	165860932	+	562.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	-2259.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.68831510630986	5.45383948359382	5.65929501974729	5.44988167783672	5.50192748746548	5.97900405003067	0.0954992649667001	0.78483393846171	0.947770123968912
Merged-chr2-35728756-3	chr2	35728245	35729245	+	761.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	32013.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	3.68682415046525	3.43689388608762	3.3739125421745	3.31302325015943	3.3607736810802	3.32951156815292	-0.669232888704427	0.268330151419616	0.665391603019622
Merged-chr1-55044859-4	chr1	55044366	55045366	+	799.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7904.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	2.82879716151551	2.81462027681586	2.98644656018863	2.79445490637381	2.75972128235727	3.00088124091626	-0.12255010009833	0.862655584336628	0.968083292979043
Merged-chr10-123196432-4	chr10	123195894	123196894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 1 of 20)	CpG	625.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	6.61896825328831	7.03665331040009	6.97113600272023	6.97710259932668	6.90185569969814	7.05528222417334	0.136533983424659	0.605234709672529	0.883468759932492
Merged-chr7-66119048-4	chr7	66118551	66119551	+	953.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9536.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	3.85727825437362	3.85283343428279	3.96343527844907	3.95888369579952	3.85922610644647	3.66892835331212	-0.15238368604067	0.770335059232543	0.943392092118189
Merged-chr1-178332724-2	chr1	178332224	178333224	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149827, intron 6 of 16)	intron (NR_149827, intron 6 of 16)	5091.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	4.28965442168624	4.48448062488331	4.71208455989231	4.3299526703218	4.41979659717002	4.66684101828851	-0.0629165689945344	0.889297850799542	0.974217570526342
Merged-chr6-8509300-4	chr6	8508794	8509794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133236)	promoter-TSS (NM_133236)	-133.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	7.69939060224113	7.55266678402763	7.53595314557138	7.76168645298236	7.41133299292613	7.47082278698804	-0.0622027097325184	0.794021387203969	0.950531747588938
Merged-chr18-65524712-4	chr18	65524206	65525206	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55524.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.22303124672597	4.40617683380062	4.55223262491099	4.66845189010195	4.32986332033542	4.27154275276562	0.110965506474649	0.810179323284758	0.954976703432846
Merged-chr19-40680668-2	chr19	40680168	40681168	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	20898.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.0607012959839	6.12618383311891	6.52319043238006	6.0756590704764	6.07033944718063	6.3029304526084	-0.158203193109495	0.604643238316648	0.88314896167691
Merged-chr15-89231169-3	chr15	89230674	89231674	+	855.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 1 of 24)	MLTR11B|LTR|ERVK	19615.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	4.39168944589137	4.47998369940448	4.55873651159915	4.18747197849691	4.16309630815749	4.37978570542491	-0.622912985849885	0.164584238505406	0.539207676744102
Merged-chr14-30974355-4	chr14	30973836	30974836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011849, exon 8 of 15)	exon (NM_011849, exon 8 of 15)	22959.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	5.30717759217665	5.42071862632066	5.64388491767038	5.08983843478238	5.34115583941172	5.54998062822623	-0.23904559510003	0.507238710602834	0.838904804247997
Merged-chr5-139149403-1	chr5	139148903	139149903	+	1000.0	f0_balb.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	598.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	4.8572369008254	4.68520763895894	5.19674575222742	5.35016839326359	5.04897516064655	5.29058246087393	0.664316364921508	0.0927469239215143	0.405701265916025
Merged-chr15-50841108-1	chr15	50840608	50841608	+	549.0	f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	47941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.85755918892104	4.72611621893544	4.47156864626171	4.49670349645799	4.57628027207255	4.49523676941647	-0.428149912209853	0.314696852870534	0.709059171318814
Merged-chr16-85112355-1	chr16	85111855	85112855	+	713.0	f0_balb.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	61352.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.0889721339305	4.47047110521288	4.62232268214708	4.34192751781376	4.34063150144417	4.53382761463186	-0.00600523000330788	0.989809214691489	0.997611022725407
Merged-chr9-32540891-4	chr9	32540381	32541381	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	CpG	571.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	8.69165550830538	9.03464258962071	8.74025768421542	8.509559706118	8.79953424024898	8.56961782965292	-0.272807917706589	0.223341676342593	0.618087468987021
Merged-chr19-47855015-4	chr19	47854507	47855507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010362)	promoter-TSS (NM_010362)	34.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	7.51111087304201	7.89932138401093	7.51868783001926	7.38353979179338	7.67280954000465	7.1355775545979	-0.340801896710529	0.209030316141986	0.600275911839254
Merged-chr1-56100356-3	chr1	56099831	56100831	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81353.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	2.38861874195279	2.37787363729679	2.46256661261346	2.24486978009382	2.1534174360993	2.2788426345703	-1.30156599114167	0.132254655156736	1
Merged-chr1-180264287-2	chr1	180263787	180264787	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7987.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	5.4770839917602	4.90407854396111	5.05950234152515	4.89794729433743	5.01331833972577	5.37629057941157	-0.148909072662781	0.717737209359229	0.927164977820669
Merged-chr11-114678524-2	chr11	114678024	114679024	+	974.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	3056.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	4.7700281751783	4.74532609182236	5.08781778185678	5.0409005830544	4.79189211372756	5.18255250461239	0.303707890312883	0.449588974253567	0.807891142850466
Merged-chr9-7832070-2	chr9	7831570	7832570	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	L1_Mus1|LINE|L1	4736.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	3.08392175245141	3.1300812285857	3.35225699521927	3.18379866879965	3.26227886232844	3.47447084816823	0.493636261099547	0.437871963657301	0.800299836401105
Merged-chr6-146668825-4	chr6	146668383	146669383	+	893.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	11665.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	3.71325127489474	3.59566101514268	3.4323267692918	3.43609778999672	3.14024613126723	3.20453221521029	-1.26081180853023	0.0445891825154832	0.266165667616173
Merged-chr9-90207437-2	chr9	90206937	90207937	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 12 of 12)	intron (NM_194334, intron 12 of 12)	44459.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.00370727953752	3.27518208741131	3.25142755225683	2.99881963049297	3.07714423436072	3.52922531623606	0.144732944522616	0.833184097068725	0.960974486074802
Merged-chr5-73492557-4	chr5	73492058	73493058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178896, intron 1 of 10)	CpG	1532.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	5.53968163592432	5.85325414538774	5.51360483556816	6.00015146041542	6.01095715455943	5.80241235196336	0.524457965961987	0.103159961905724	0.428296315983601
Merged-chr11-109860263-1	chr11	109859763	109860763	+	589.0	f0_c57.idr	Intergenic	Intergenic	14385.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	2.43498488298538	2.32987812862727	2.3252129454802	2.86846547775915	2.59192054570253	2.73621110950375	2.31566351798616	0.0077724970418498	1
Merged-chr16-44141565-5	chr16	44141025	44142025	+	728.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	1716.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	6.41210171198246	6.53972726299707	6.09879366795846	6.30021354884308	6.50379930244953	6.24866241731191	-0.0188722379362153	0.948729082100342	0.988169196639905
Merged-chr6-71458195-4	chr6	71457706	71458706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17569.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.64146910135469	5.3231786127851	5.39452857272248	5.55911606763911	5.81824296388874	5.22448839483373	0.206541790882704	0.573139808469728	0.869962295500663
Merged-chr1-118513758-2	chr1	118513258	118514258	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359347, intron 20 of 40)	RSINE1|SINE|B4	-54493.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	2.4129206228601	2.27533915087791	2.52344617999518	2.40185268254178	2.30028327042426	2.40777910780087	-0.225883873437217	0.784366924873198	1
Merged-chr8-106953777-3	chr8	106953268	106954268	+	915.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	18018.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	4.01087855609131	3.76739696123588	3.84643643689535	3.47115588106914	3.43026739847927	3.66077822271105	-1.25883783066101	0.0248918844879609	0.186527730950491
Merged-chr1-36273493-4	chr1	36272996	36273996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-71.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	8.62144142825638	8.53480556380796	8.23577029830072	8.55126332760905	8.69861515921752	8.14612702941819	0.0198167542910387	0.93668181940446	0.986037792257163
Merged-chr12-12320896-4	chr12	12320403	12321403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	58764.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.64515047811089	5.69078872442944	5.74952324714769	5.28964266249095	5.60339711547365	5.63027605504185	-0.329058427418202	0.317688716892864	0.711502260156078
Merged-chr7-78911648-2	chr7	78911148	78912148	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162939)	TTS (NM_001162939)	-1776.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	3.57638748033102	3.68802500473485	3.50986831914943	3.50983207625818	3.20673259550542	3.63396808542428	-0.52078788197294	0.388411025038217	0.768272194618311
Merged-chr8-72322619-4	chr8	72322138	72323138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008452)	TTS (NM_008452)	3576.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.08461309062708	6.81872998155522	6.7067632395857	6.68552390269133	7.00488900626329	7.02787719857292	0.0439132268800241	0.871574545449346	0.970227816594767
Merged-chr4-147403472-2	chr4	147402930	147403930	+	881.7333369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-149847.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.32305607165975	3.8203022455114	3.72584008799062	3.89480651605847	3.88249683088631	4.21399259504138	1.14089621412159	0.0522066996615334	0.292034626247857
Merged-chr10-24633776-2	chr10	24633276	24634276	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	38334.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	7.46107372296431	7.37764034745961	7.07379698696802	7.14777723186696	7.26848499212443	6.70245019204598	-0.369041086613682	0.187123243629237	0.572089925767512
Merged-chr9-20951564-2	chr9	20951064	20952064	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199432, intron 1 of 38)	intron (NM_001199432, intron 1 of 38)	1059.0	NM_001199433	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	3.41992254806314	3.38172971421343	3.13172095501674	3.29699042178477	3.36996778310109	3.43925720781854	0.172235826913751	0.781385333647023	0.946174647340264
Merged-chr1-125434729-4	chr1	125434243	125435243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	984.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	8.4347627575774	8.58684280683517	8.18080735192442	8.65954846011339	8.96442400446661	8.46844718104339	0.419429315706212	0.0853092515320908	0.386568778687067
Merged-chr17-21708629-3	chr17	21708124	21709124	+	879.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001008501, exon 2 of 6)	5' UTR (NM_001008501, exon 2 of 6)	883.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	5.0605805786837	5.31677576464474	5.29554017725716	4.88394313159119	5.38386691254272	5.23391144614224	-0.074190695090013	0.846327387604703	0.963987423586105
Merged-chr11-75151673-3	chr11	75151161	75152161	+	576.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	16491.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.01485332130291	5.22802301083972	5.60392422228735	5.25975137470046	5.51866329599997	5.26691456673272	0.1363488927374	0.719245140382399	0.927744615256071
Merged-chr18-20649108-2	chr18	20648608	20649608	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-16142.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	5.93779773444817	5.61498487878009	5.85863536640052	6.31538654568066	6.2964088883764	6.19365422632776	0.800270372416839	0.00720390059206188	0.0798059060663407
Merged-chr17-33760481-4	chr17	33759984	33760984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	2.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	8.58425472510931	8.79410189530564	8.28610756262938	8.52714135726222	8.85948856813532	8.35415470687522	0.0372043529538165	0.883264911695211	0.973347392063704
Merged-chr1-78659207-1	chr1	78658707	78659707	+	901.5	f0_balb.idr	intron (NM_001136226, intron 1 of 3)	intron (NM_001136226, intron 1 of 3)	767.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	3.74301202490645	3.66914102507719	3.42445121027748	3.53596174625137	3.41235233406976	3.55360930211903	-0.45923974687032	0.427571787344322	0.794421965017558
Merged-chr12-4592136-3	chr12	4591634	4592634	+	591.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-874.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	3.90276666612114	3.44825973562588	3.61492045374322	3.6093909893661	3.59002075116741	3.789012357673	-0.0387309672204199	0.946490968571626	0.988002063841177
Merged-chr3-87214716-4	chr3	87214212	87215212	+	895.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-39965.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	5.34624758819712	5.41833492373031	5.02354681623162	5.61790832874248	6.16995532131984	5.68225199242776	1.07068216036168	0.0040251255336968	0.0521523895060484
Merged-chr1-9850286-1	chr1	9849786	9850786	+	583.0	f0_c57.idr	intron (NM_001037759, intron 1 of 16)	L2a|LINE|L2	2005.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	2.90505693862909	3.15171629681757	3.1443625499538	3.07940266875091	2.78395042552705	3.27083978088343	-0.0725894652363323	0.918729806991805	0.981830247255695
Merged-chr6-49013190-4	chr6	49012680	49013680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13564.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	4.66122287337235	4.82378819830012	4.85864681170906	5.11035194292258	4.84777514968073	4.72953128832116	0.289483875616992	0.469878641797786	0.819156207361246
Merged-chr4-128839935-4	chr4	128839433	128840433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33821.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	7.60522466996388	7.7558796762358	7.63362686399273	7.37257230622219	7.30653182550931	7.35963059659178	-0.475199553539693	0.0330607614627753	0.221705338474743
Merged-chr19-10173139-3	chr19	10172655	10173655	+	689.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9733.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	5.79345903649468	5.75165477142561	5.68965471806615	5.10654612548237	5.39216621483422	5.44621698454982	-0.808271580511416	0.0158145635453265	0.137862567153434
Merged-chr12-12223538-4	chr12	12223037	12224037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38602.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.38711986543503	7.36600001352753	7.20742013715481	7.50995456074173	7.78056905255238	7.39345082272306	0.371727071559464	0.12709524428527	0.476399034101412
Merged-chr9-63400261-2	chr9	63399761	63400761	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1017.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	5.13098779320855	4.96445088782193	4.71380490123432	5.45709235416274	5.37914121284878	5.23943309467175	0.831062960856166	0.0277543892308723	0.198830801268517
Merged-chr7-27731427-4	chr7	27730934	27731934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029531)	promoter-TSS (NM_029531)	25.0	NM_009560	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	5.75032494424974	5.89254743050954	6.22332359379747	6.04477503065402	5.84996319842078	6.33829003646226	0.21137221394363	0.521249666369674	0.84693755135567
Merged-chr10-19941353-4	chr10	19940866	19941866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	6840.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	7.22953118345326	7.33367283450864	7.14831641385637	6.75378177905802	7.11486368858949	7.43726934563985	-0.172764819045261	0.534549267247621	0.853068627162717
Merged-chr8-82864410-2	chr8	82863908	82864908	+	849.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_177378, exon 1 of 7)	exon (NM_177378, exon 1 of 7)	1052.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.71474656070439	5.50881407989776	5.72941219548059	5.39853128034778	5.32163211642219	5.40595029972491	-0.530471780770572	0.107277795180915	0.437181446831891
Merged-chr16-91841628-4	chr16	91841135	91842135	+	960.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	89995.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	8.1201186633648	7.99982996175086	7.52926218435744	7.85774628676097	8.13620333195275	7.2964992691637	-0.133443601255636	0.662688745056383	0.906804932599005
Merged-chr6-72736627-2	chr6	72736127	72737127	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	52418.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	5.8258512363613	5.79848119101426	5.69869086725234	7.0052694501192	6.98658581463309	6.58999391688484	1.81205850927098	4.56637541413142e-10	5.29190759692266e-08
Merged-chr19-55683929-4	chr19	55683443	55684443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MTD|LTR|ERVL-MaLR	18261.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.53868530243664	6.71395996781611	6.62390731572908	6.35458713423277	6.58207784575829	6.5123017293188	-0.222412594828442	0.402651916139347	0.778169663804428
Merged-chr5-108105692-3	chr5	108105191	108106191	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152817, intron 16 of 16)	intron (NR_152817, intron 16 of 16)	26929.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	3.42329417110856	3.57507286126461	3.72019983857255	3.80329146165722	3.95959829185654	3.88999746810012	1.06122519626339	0.0523174774838398	0.292418396350866
Merged-chr16-91645918-2	chr16	91645421	91646421	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	intron (NM_010256, intron 1 of 21)	1051.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	5.07908076811961	4.69068037063352	4.62943676927542	5.1800256761417	5.05654961092493	4.94167733777386	0.522508065903239	0.198440848127016	0.586749382074533
Merged-chr6-92127033-4	chr6	92126501	92127501	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34568.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	5.09698862291601	5.29389390031347	5.07212093310356	5.39521029535652	5.45387716174987	5.30702673072057	0.45407037981272	0.194748515567065	0.582293092935584
Merged-chr7-81862101-3	chr7	81861587	81862587	+	952.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-600.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.39998483415733	6.50604585506302	6.50305582809626	5.84556568810133	6.06607706444262	6.22964565954806	-0.698949005468283	0.0148110608825151	0.131467841688603
Merged-chr12-112588689-4	chr12	112588195	112589195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198411)	promoter-TSS (NM_198411)	-89.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	5.75895728037172	5.89965843382133	5.83832695459902	5.80310582487515	5.61548893400626	5.48852846131899	-0.339270026927592	0.2837949123406	0.68148750934452
Merged-chr11-90002882-4	chr11	90002376	90003376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008796)	promoter-TSS (NM_008796)	18.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	3.35770551657797	3.40019598087885	3.38930352275828	3.3950075036198	3.30236609972473	3.34810861203184	-0.136527070871529	0.817787648613587	0.956835450074313
Merged-chr9-56104468-4	chr9	56103966	56104966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	14490.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	5.78407869162118	5.88570354621941	5.96527542412953	6.01753688216456	5.88838110956833	6.17569262735048	0.257998475600277	0.391424770857646	0.770454068270913
Merged-chr4-45012560-4	chr4	45012081	45013081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-169.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	7.9205108749726	8.05230314422734	7.53651423767944	7.74657586296239	8.03045651278877	7.96356991420748	0.081639383776161	0.743506180623038	0.935657324217812
Merged-chr11-51916766-4	chr11	51916276	51917276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50855.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	8.67179049952904	8.81165032599925	8.60279167927132	8.65022315090676	8.91304888037449	8.37903802051561	-0.0372810548939776	0.873204656644773	0.970398443653315
Merged-chr11-54884607-4	chr11	54884104	54885104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	18221.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	7.57590398512813	8.05332437491311	7.89075481404062	7.69038858773488	7.9114944119343	7.66730228461031	-0.129445973586338	0.601257640262722	0.881898948141997
Merged-chr7-28823640-2	chr7	28823140	28824140	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1698.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	4.31697070851691	4.13231755983039	4.22863499320274	3.87950258791567	4.08841416995023	4.38065483286492	-0.288882365007692	0.559321658132701	0.864901733108576
Merged-chr16-91030963-4	chr16	91030477	91031477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 7 of 17)	B1F1|SINE|Alu	13402.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	6.13693797419567	6.04286137600955	5.45688048496594	5.72403059782928	5.60738901756752	5.45675159793138	-0.578501832211706	0.102698853540237	0.42734729436836
Merged-chr14-14905061-4	chr14	14904523	14905523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 22 of 34)	intron (NM_001195229, intron 22 of 34)	84208.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.70568073622352	3.69790179234114	3.59948675576671	3.61823405005761	3.46575632956404	3.32288747409458	-0.686767134443565	0.23635932243318	0.632720263621021
Merged-chr14-27249394-2	chr14	27248894	27249894	+	923.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 1 of 10)	intron (NM_027871, intron 1 of 10)	11384.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.4318742271602	2.5999272652358	2.95011005912922	2.48703671924645	2.21519597722299	2.61718065043414	-1.32436582312112	0.140327043214666	0.50067889935277
Merged-chr18-12948427-2	chr18	12947927	12948927	+	722.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6586.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	2.63534804147726	2.71926927757532	2.90750608173088	2.61745345382529	2.66347422705886	2.68106852920435	-0.539984500751561	0.470664089417989	1
Merged-chr11-100739038-2	chr11	100738538	100739538	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-823.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	4.68044895715404	5.28504498194041	4.77292254391323	4.93582170015648	5.38543001556299	4.6682245942133	0.198780550893938	0.668102076470759	0.908976375106763
Merged-chr19-12592102-4	chr19	12591584	12592584	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4482.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	3.33820992649483	3.13807863289226	3.3121553059443	3.55400991179449	3.30494611169117	3.38422612682241	0.604408003082316	0.325779154353169	0.718259738003882
Merged-chr5-102035747-2	chr5	102035247	102036247	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	34174.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.2986675916213	5.32260832258499	5.83517680688561	5.88316726698809	5.78329390801372	5.94166479352506	0.689151226160963	0.0453560152380593	0.268878834135683
Merged-chr18-36714302-2	chr18	36713777	36714777	+	990.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	12538.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	5.51627000408475	5.44803480100121	5.40097633029941	4.89864711787723	4.70885030218153	5.08423343230381	-1.18166929698106	0.00127626864591492	0.0217837459465207
Merged-chr16-90426329-4	chr16	90425815	90426815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	39918.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.41518613588858	3.13604700245434	3.18769258404741	3.39123490143238	2.92992860709298	3.48291127584806	0.133907021620462	0.846076195794686	0.963952023053746
Merged-chr7-110919924-2	chr7	110919424	110920424	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	L1MB3|LINE|L1	14939.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	4.59412217419408	4.57751664021999	4.95712869618333	4.43541694583014	4.95683430604013	4.77456048026479	0.0816862617497998	0.853590217251897	0.965729404686806
Merged-chr1-166409306-4	chr1	166408806	166409806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175170, exon 2 of 6)	5' UTR (NM_175170, exon 2 of 6)	522.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	5.64509831639633	4.78352956004734	4.94564113178437	5.3399692610512	4.7743468825762	4.81252643620279	-0.382836206580586	0.416566961259104	0.787467859490367
Merged-chr12-64966800-3	chr12	64966326	64967326	+	956.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1084.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	6.2112342932595	6.18233088198338	6.09407258198954	5.91469289534902	5.92940453528504	6.49412544894038	-0.0636958914516838	0.842231077788077	0.963002495523594
Merged-chr14-20105629-4	chr14	20105133	20106133	+	908.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22461.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	3.36208075708901	3.5167687470958	3.646186404372	3.5297797931742	3.41500260398641	3.50719758719127	-0.0943969186097236	0.870779597238572	0.970222087171093
Merged-chr9-120060196-2	chr9	120059696	120060696	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	B1_Mus1|SINE|Alu	8100.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	3.24694489186016	3.45609650122061	3.50726577520568	3.09856706446485	3.07388532991696	3.13518284937489	-1.28606544060621	0.0453670726822278	0.268906068082548
Merged-chr16-91931573-4	chr16	91931055	91932055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138597)	promoter-TSS (NM_138597)	75.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.63748456606365	7.87760901527159	7.2589159967029	7.71768185549879	8.0213397309044	7.44578270895459	0.192256930084529	0.498503755083692	0.833897130855037
Merged-chr15-81585254-4	chr15	81584759	81585759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-955.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	8.09717410554406	8.03425599336162	8.15606820577951	8.12570507496649	8.30785862076003	8.2249124938386	0.181660064067163	0.383924847582758	0.765097611608213
Merged-chr3-107631747-4	chr3	107631236	107632236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153563)	promoter-TSS (NM_153563)	-26.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	6.38319544802277	6.44653222742232	6.7394687408305	6.33059980493697	6.36952759683088	6.1092174584658	-0.391967383749953	0.172151455465917	0.550749681454482
Merged-chr5-121546755-4	chr5	121546257	121547257	+	933.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-865.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	6.44088341228987	6.78328013880355	6.3673531489559	6.45452510055343	6.79648923283582	6.34697887846894	0.0121042093746749	0.967856668313813	0.992633833139547
Merged-chr1-36511793-4	chr1	36511314	36512314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053186)	promoter-TSS (NM_053186)	-53.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	5.34107137373916	5.12621105179608	5.42837794447521	4.98022420987784	4.84455684978168	5.0582427162875	-0.716768028409468	0.052647203371161	0.293630169455565
Merged-chr5-143465554-4	chr5	143465061	143466061	+	803.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1068.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.6320792016857	6.56798925411683	6.20532059067396	6.52847894289893	6.71020921676946	6.3094270433821	0.0715491535174488	0.80770492512457	0.954557080558103
Merged-chr7-48908917-4	chr7	48908421	48909421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27325.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	5.62832146956914	5.66954622108593	5.76927281790936	5.51951909935868	5.67194733439781	5.59449415777135	-0.158299821143909	0.616550928897188	0.888391945757827
Merged-chr15-86273513-4	chr15	86273016	86274016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-4159.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.60833978824438	7.84028810283299	7.27289084650019	7.32160480439866	7.39787560671283	7.29464322009503	-0.386078382753699	0.131139308564774	0.484001865678154
Merged-chr3-88835473-1	chr3	88834973	88835973	+	643.0	f1_balb.idr	intron (NM_027389, intron 1 of 31)	CpG	242.0	NM_001242372	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	3.27704638014577	3.23471478787	3.55522531720459	4.75698454430911	4.81452688255729	4.54728651124619	5.69722416727195	4.22305942583107e-10	4.91457802383988e-08
Merged-chr2-158161787-4	chr2	158161234	158162234	+	877.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15342.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.86793272220639	5.03809902021419	5.38912252377234	5.30704807442194	5.24538453651896	5.39453678993109	0.429433343325807	0.252202670009843	0.64970951645701
Merged-chr12-69486229-4	chr12	69485747	69486747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10697.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.80093811721843	5.57491433035677	5.2568252611793	5.54983002094671	5.48502217211996	5.18108498800091	-0.291539548546145	0.425778672182899	0.793357930737072
Merged-chr4-128670739-4	chr4	128670224	128671224	+	939.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	16022.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.13917061239321	6.23534813305023	5.72318276350352	5.97369866029748	5.88158792884805	5.54776260963891	-0.418444468123446	0.211923721304686	0.604389720110007
Merged-chr1-133132884-4	chr1	133132378	133133378	+	838.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1712.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	7.67648191427475	7.95311797361587	7.25793105639041	7.60054071604967	7.88729653596837	7.99906412417745	0.241730996165963	0.383295605432237	0.764716365434363
Merged-chr4-150583124-2	chr4	150582624	150583624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	69050.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.78607245213939	7.11635939139423	6.683937424053	6.8949054879182	7.13011785528776	6.8531691463471	0.134955443450404	0.620759513869928	0.890308839459615
Merged-chr11-69409535-4	chr11	69409038	69410038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	intron (NM_001017426, intron 1 of 22)	4137.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	9.28622256251744	9.16144200468822	8.76683284461878	9.12146366856877	9.43325176932989	8.6773094885951	0.0367987353128545	0.892810595476462	0.975146620821922
Merged-chr14-47375214-4	chr14	47374736	47375736	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	ORR1A2|LTR|ERVL-MaLR	1376.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	8.27936791783119	8.17488972882004	8.10626813355838	8.34715453986355	8.70686172743098	8.08255140415702	0.311738695394086	0.208644428876471	0.599651784024869
Merged-chr4-32342544-2	chr4	32342044	32343044	+	747.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-74891.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.30648852500591	3.57465560882462	4.12102094549166	3.16557510982831	2.93326232062158	3.38185371299389	-3.70358742288577	2.79262291412674e-06	0.000133162502830176
Merged-chr7-141477334-4	chr7	141476776	141477776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	MIRc|SINE|MIR	896.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	6.60316666748081	6.14247058240172	6.95475617072156	6.60284534865816	6.57008560569625	6.59287735326858	-0.0188145605909321	0.952492553783119	0.989124260059756
Merged-chr2-32507305-4	chr2	32506814	32507814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28045.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	7.53308937730053	7.51319669283429	7.25314713686324	7.38022352191235	7.72009606973349	6.79462785651414	-0.110455237320002	0.719981312156568	0.927974922115365
Merged-chr14-64834699-4	chr14	64834219	64835219	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115138.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	6.26763686112832	6.49431704501419	6.3753206456423	5.9236302746501	6.1799696718707	5.94434396200937	-0.591216570324033	0.0428708364437606	0.259545733324536
Merged-chr12-54820865-4	chr12	54820420	54821420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25258.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	5.90010645858281	5.90615044420917	6.16986552255239	6.22482992394401	6.20064077341551	6.03552831739515	0.298273729603957	0.310402857286758	0.705829393476587
Merged-chr3-88191277-4	chr3	88190762	88191762	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13477.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	2.98361252943577	2.60906555195871	2.58416328494809	2.71178916499428	2.70782208769899	2.97111762026457	0.286728682909057	0.715397011206036	0.926392907650078
Merged-chr17-29435600-4	chr17	29435085	29436085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-55460.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.48651392890802	6.06797851269233	5.92484300230325	6.6456978508918	6.80983035700042	6.18321436339789	0.636716416991033	0.0559034552818264	0.304407901936361
Merged-chr13-49178072-4	chr13	49177580	49178580	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9467.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	3.41986191748652	3.10111879822152	3.39700590473486	3.58117389478718	3.39525476033216	3.35542926683362	0.529056078799595	0.395231293327815	0.772579826044138
Merged-chr10-42487083-4	chr10	42486580	42487580	+	743.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8515.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	3.7514036685661	4.05347184958835	3.79064965262556	4.01409965284455	3.89986664259334	3.86145786668784	0.152451475386696	0.770261486761461	0.943392092118189
Merged-chr19-61199772-4	chr19	61199267	61200267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23458.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	8.67296940059637	9.47392984411994	8.02025728417858	8.94634981489238	9.27531165130649	7.91721221436981	-0.0430828589634557	0.954492592839934	0.989606357454991
Merged-chr13-46735448-4	chr13	46734949	46735949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7600.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	7.43017432642323	7.89885994442087	7.41076248535999	7.2831987238719	7.53142056135333	7.26260546157733	-0.346527812062106	0.191324645342357	0.577911971889747
Merged-chr2-90508188-2	chr2	90507688	90508688	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-29014.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.54292112190783	5.65247134146108	5.575223260706	5.85049240452686	5.92300586583263	5.48883694288016	0.34582301964714	0.292284427692536	0.68951252554772
Merged-chr17-34198391-4	chr17	34197884	34198884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010724, exon 1 of 6)	5' UTR (NM_010724, exon 1 of 6)	189.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	6.87401998965889	6.74668413729377	6.93167444762731	7.18366715672068	7.54904883918929	7.19843398294154	0.727430587695198	0.00447443775999792	0.0566507938426517
Merged-chr1-89891622-4	chr1	89891104	89892104	+	945.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178119, exon 18 of 18)	3' UTR (NM_178119, exon 18 of 18)	39572.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	4.20459704312091	3.92093077735598	4.01660533204371	3.75995130524375	3.65427858267675	4.0381751881271	-0.733640302470974	0.165932509107014	0.541089092560861
Merged-chr7-24610722-4	chr7	24610224	24611224	+	860.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-604.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	3.78482378419031	3.63585120781022	4.2477864835071	4.14691839250802	3.89889775030705	4.00532060309388	0.342838570193278	0.53283939870615	0.852011692079098
Merged-chr1-138288943-4	chr1	138288443	138289443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177397, exon 3 of 3)	3' UTR (NM_177397, exon 3 of 3)	15205.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.53216373414963	4.71646834726082	4.42587317198783	4.36131305683885	4.43251175032996	4.73519672480942	-0.148871105392875	0.735915543087886	0.932985636193948
Merged-chr15-94688283-4	chr15	94687801	94688801	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59116.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	5.70905143821393	5.37238014814555	5.33141335396648	6.30820611990919	6.14917942076412	6.12237965182972	1.25207501965162	0.000109687636121236	0.00306684530921013
Merged-chr9-25569108-2	chr9	25568608	25569608	+	909.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RMER1B|Other|Other	87511.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.78927135390874	3.5417700888965	3.60434208474029	3.65207810647633	3.62944791091873	4.10597266079192	0.506181335012997	0.377875132930635	0.760222685045705
Merged-chr1-105094814-2	chr1	105094314	105095314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261193.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	3.87293422987665	4.01357121245928	3.84262835250835	3.98441179735921	4.14664072973776	4.41284136785059	0.785222116284763	0.121817343277363	0.466849055144701
Merged-chr2-160212539-4	chr2	160212058	160213058	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114936.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.56235738283371	6.51258311196024	6.61042238617888	6.49984472551851	6.6285569399896	6.55100026694922	0.00697934043664756	0.978449977339843	0.995146803081243
Merged-chr2-52772617-4	chr2	52772116	52773116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-30467.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	3.93335723387293	3.91874636149217	3.84935700081094	3.90913424636815	3.74766841353014	3.65042299793427	-0.403350466897265	0.441968085415534	0.803032582797918
Merged-chr16-91785859-4	chr16	91785350	91786350	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	56479.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.0862189869369	4.06769252597813	3.94293755890704	3.97772118525796	3.93204051893135	4.20040788228529	-0.014469044932816	0.976631245774663	0.994723308989508
Merged-chr11-75631839-2	chr11	75631339	75632339	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 1 of 11)	intron (NM_008916, intron 1 of 11)	819.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	4.69539312633388	4.63354604735148	4.55091517012148	4.81667835548535	4.82453594434435	4.43817784681448	0.200069105133845	0.636250625445804	0.8970753299382
Merged-chr5-90685965-4	chr5	90685457	90686457	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.01870133962987	4.79159222298635	4.72758355744595	4.4406393174916	4.13340617879055	4.27062262525755	-1.42508352449733	0.00125662647915657	0.0215191142370159
Merged-chr11-30196014-3	chr11	30195510	30196510	+	812.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	2247.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.30066557748847	4.40486948695716	4.25681377477333	4.30953531073149	4.31073398806307	4.49766521072818	0.11177436943567	0.802464890544719	0.953198534492307
Merged-chr6-34608805-4	chr6	34608297	34609297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	10293.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.13309919977738	4.99687432732614	5.42023060021663	5.42195088710752	5.40186205192235	4.91064893266648	0.185061059526928	0.636612757878012	0.89720767300409
Merged-chr7-3705397-2	chr7	3704886	3705886	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 3 of 4)	intron (NM_029767, intron 3 of 4)	1345.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	4.87128772407589	4.86362722042999	5.12574295276192	5.25277121202793	5.31184103218729	5.64218932752852	0.93708059521856	0.0119940797950643	0.114238636326329
Merged-chr9-99112302-4	chr9	99111790	99112790	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	27921.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.72710146310012	5.75226819207121	5.57592500277306	5.79650954302258	6.05610757250052	5.82919639124807	0.382693090476909	0.221092261651384	0.615621501204726
Merged-chr15-31453673-4	chr15	31453172	31454172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	17.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	7.29725235203781	7.64588900417959	7.3037758534539	7.44593835092174	7.52213950430924	7.25486588118899	-0.0197463424383931	0.936918541241437	0.986037792257163
Merged-chr7-73596609-4	chr7	73596089	73597089	+	957.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-38194.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	6.68348423045231	6.99447304752563	6.62218110411923	6.49605923569623	6.75094904295119	6.48535933419265	-0.303528586961314	0.275766509651313	0.673242318833586
Merged-chr17-35200216-1	chr17	35199716	35200716	+	577.0	f0_balb.idr	exon (NM_001278601, exon 3 of 3)	exon (NM_001278601, exon 3 of 3)	1791.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	5.33902542123174	5.05589287005412	5.61805416989736	5.35462754687136	5.12825959388147	5.55080714422905	-0.00185449082526404	0.996119740638838	0.998961028701257
Merged-chr19-5088020-4	chr19	5087537	5088537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-501.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	5.44667797829926	5.30749848943867	5.3614242951997	5.35865551295159	5.59528825841675	5.51368636975794	0.237840008143951	0.478374688142922	0.823771292116755
Merged-chr15-67147556-3	chr15	67147054	67148054	+	974.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	29328.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.9343617027645	4.45911992569987	4.77014048324452	4.59974478512398	4.43801344687676	4.60151759917147	-0.458228992483942	0.292196560212402	0.689498366007418
Merged-chr3-115692620-4	chr3	115692008	115693008	+	981.011902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22547.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.78637811784096	3.92260293630489	3.71507108368952	4.11773793807322	3.58999329080124	4.0850371075117	0.409539009510533	0.464604270124579	0.816459397744841
Merged-chr11-75588127-4	chr11	75587631	75588631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	52.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	8.12905525941012	7.8771879151292	8.09452550441488	7.87152250189888	8.03962205692327	7.97924333337355	-0.0993581416733139	0.65111517503112	0.902735752871093
Merged-chr16-95834488-2	chr16	95833988	95834988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	B4A|SINE|B4	64225.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.92405747068056	3.35741263701595	3.53917506116951	3.31909984414677	3.288750693742	3.50123013192523	-0.972097374342269	0.12069028422794	0.464667646216844
Merged-chr8-116946581-6	chr8	116946065	116947065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3172.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	7.08554451549883	6.93691586669617	7.23529464356228	6.74449234541453	6.98162790256962	6.98663063007378	-0.269156890144465	0.290697493341982	0.688530967042335
Merged-chr2-132253311-4	chr2	132252787	132253787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-107.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	7.77982849307507	7.99035522898145	7.38577446992009	7.63492165519231	7.80878288389521	7.11379930213326	-0.270893665310696	0.360304813468124	0.746538582112494
Merged-chr1-45817089-3	chr1	45816591	45817591	+	779.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028599, intron 13 of 20)	intron (NM_028599, intron 13 of 20)	21925.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	3.74317246470411	3.71805389787014	3.6380583822357	3.77547288138207	3.45207135823223	3.81177706392766	-0.0721193926599947	0.897585471870447	0.976055448838318
Merged-chr11-103008732-2	chr11	103008232	103009232	+	613.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	ID_B1|SINE|B4	8415.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	4.61315517649581	4.65680053359359	4.87783430947264	4.65949954378088	4.44554893456556	4.60778568112441	-0.348394539216612	0.404899216017117	0.779791650050306
Merged-chr13-60674481-4	chr13	60673956	60674956	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	72245.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.70167539409013	7.82937976184761	7.88399857621099	7.73668365999062	8.10387267348142	7.69506236960514	0.088884006166892	0.710605848507243	0.924389977637543
Merged-chr5-103732785-4	chr5	103732225	103733225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21437.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.17387436466264	4.82369463413044	4.70553402525401	5.4115580261027	4.98279478956144	5.25220550511636	0.62242608416628	0.126579521387255	0.475549804679232
Merged-chr12-70111976-4	chr12	70111483	70112483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	52.0	NM_001286080	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	7.18082156677746	7.19409710337538	7.40279770544263	7.07625018334483	6.79839538113761	7.07387890630109	-0.416263954244518	0.0965144329739511	0.414170858117407
Merged-chr2-148681555-4	chr2	148681066	148682066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	446.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	7.70404116349415	7.4919438102405	7.352974585079	7.57969014945552	7.77875564925161	7.61707411121222	0.195091656163288	0.4106227820838	0.78349619906958
Merged-chr12-98370960-4	chr12	98370465	98371465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102330.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.35074840465374	3.21137890794015	3.37640907323999	3.20927709005024	3.19460992436483	3.33777234494998	-0.275296996194547	0.654702898937416	0.903878958900373
Merged-chr7-100952213-4	chr7	100951695	100952695	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	12171.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.5257915937248	6.60071171684598	6.83284951923172	6.61848722845789	6.51812354371833	7.13156396457388	0.1896844248384	0.526957900807626	0.849710825989052
Merged-chr10-25285247-4	chr10	25284736	25285736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	13927.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	8.1972020073762	8.38269057933043	7.97117150720199	7.97006327145609	8.414335889011	7.68909144086077	-0.180463785942225	0.51323033965075	0.842416687973146
Merged-chr1-143740163-4	chr1	143739692	143740692	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038594)	promoter-TSS (NM_001038594)	-255.0	NM_001038594	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	5.73739326566305	5.94718186439217	6.0185913479564	5.48583045121222	5.75778925112062	5.7766990182049	-0.398783046775693	0.212673373461964	0.605223368070834
Merged-chr4-62496984-2	chr4	62496484	62497484	+	654.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138653, exon 7 of 7)	exon (NM_138653, exon 7 of 7)	5216.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	2.21685385808796	2.25542485799966	2.21639443869771	1.83553199403608	1.81714310891911	1.88006607104545	-4.57329739239644	0.000694401033167394	1
Merged-chr17-24669635-4	chr17	24669143	24670143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-44.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	7.77402236150693	7.75334916939107	7.67913024420963	7.53235184002593	7.55880263585248	7.56765069165219	-0.269509215825139	0.211955384557902	0.604420229358776
Merged-chr7-67369816-4	chr7	67369320	67370320	+	805.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	3038.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.16045880222408	5.21403008748561	5.29741602419438	5.48161267978438	5.50059330955457	5.56516280273096	0.576951384802389	0.0846734454024097	0.385394912984962
Merged-chr13-29290833-3	chr13	29290323	29291323	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 15 of 16)	intron (NR_131896, intron 15 of 16)	274568.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	3.42710417826729	3.53874919114778	3.42275646327773	3.95234665144169	3.91003870220503	3.55657555893318	1.23447090944105	0.0324500545050344	0.218986547871444
Merged-chr18-77954583-3	chr18	77954097	77955097	+	961.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 4 of 43)	intron (NM_001195633, intron 4 of 43)	16130.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	3.33947016342382	3.13438385899851	3.34506943409785	3.77227574406919	3.33424387228403	3.35992374448414	0.885315063857159	0.161256025335006	0.53399893962969
Merged-chr19-41369348-1	chr19	41368848	41369848	+	620.0	f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15722.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.09115334622893	5.776182449697	5.98212643228233	6.22452610094976	5.88774330514008	5.97325872846196	0.140548769215039	0.651565893450841	0.902860989743513
Merged-chr2-21179310-4	chr2	21178779	21179779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26086.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.46887811754694	4.30262477747461	4.41977047265567	4.24018429162636	4.23454862068771	4.68093375888466	-0.0205663201057845	0.96461973443014	0.991519129389361
Merged-chr9-47644454-4	chr9	47643945	47644945	+	864.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	114093.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.56644245347859	5.32484381306696	5.72770599125901	5.73782466776286	5.29557331352049	5.68853684385014	0.0726591036904942	0.838500659133632	0.962518552953479
Merged-chr7-80179494-3	chr7	80178961	80179961	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7380.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.47378265103085	3.97873001195219	4.61092991955903	6.23813133785817	6.60239284465165	5.87146394691691	4.10080014973707	1.09231511731056e-18	5.87004621454286e-16
Merged-chr5-112279578-4	chr5	112279083	112280083	+	871.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	2892.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	7.11072556533504	7.40665563605885	7.01846890482382	7.05077781645235	7.22315848616433	7.17980074435289	-0.0643468859406329	0.799250505055579	0.95224724710323
Merged-chr9-65885088-4	chr9	65884590	65885590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170907)	promoter-TSS (NM_001170907)	83.0	NM_001170907	56404.0	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	6.6039291353619	6.59991576049245	7.00274635274427	6.49688464567662	6.91994469765031	6.80170049991081	0.0234595192780751	0.935017038263481	0.985758101267319
Merged-chr1-180255232-2	chr1	180254732	180255732	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	1068.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	2.63974813862344	2.88973486549897	2.72791184278211	2.44790299270428	2.36289407166813	2.67821015826396	-1.57075090841189	0.0588709545799183	1
Merged-chr2-59228982-7	chr2	59228469	59229469	+	871.569031	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	MTC|LTR|ERVL-MaLR	68119.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.92180571697114	5.73679706807491	5.83061948356237	6.04524234302978	6.20523192626657	5.78831849204277	0.360066680240261	0.247241342858181	0.644145276280485
Merged-chr17-30570355-4	chr17	30569850	30570850	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	MTD|LTR|ERVL-MaLR	5937.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	4.26996399802315	4.00306992475833	4.14866511208784	4.39034338514137	4.5072417072998	4.67980127711668	1.0052721322836	0.0295279586380192	0.206675839699891
Merged-chr5-127607726-4	chr5	127607213	127608213	+	912.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	9679.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.73513700310117	5.76019988147144	5.58521206097767	5.82083460507139	5.94625439136614	6.00307584297187	0.395205693595727	0.196872024805217	0.584754678471847
Merged-chr5-24051940-2	chr5	24051443	24052443	+	845.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER2|LTR|ERV1	-21253.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.4497317522987	4.680777963588	4.58001163620608	3.58095925678756	3.34127311671965	3.94576947194112	-3.09725843297283	3.06501527900498e-07	1.91466810311897e-05
Merged-chr7-141379747-4	chr7	141379250	141380250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12410.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	5.97038443149934	6.01219721947649	6.50020927596704	6.2608125005107	6.3449070149742	6.42231278669987	0.288011737310436	0.347698276771124	0.73571554810222
Merged-chr12-73633851-3	chr12	73633322	73634322	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	L1MC3|LINE|L1	49026.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.30750397114339	4.25696463286554	4.48225417035172	4.00477656902158	3.89948445040598	4.16904477933679	-0.923687472242988	0.054157382825131	0.298768647491447
Merged-chr6-97802985-2	chr6	97802485	97803485	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4073.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.80277195897227	3.73013037693326	3.78107669984215	3.45715401137722	3.6853649896784	3.99154249663995	-0.159411700479435	0.777402079329808	0.945093216103975
Merged-chr8-105345765-3	chr8	105345278	105346278	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2192.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.48280869346287	6.38661081478874	6.86063455312239	6.79081859595369	6.76790248009021	6.72863480761541	0.289400777668278	0.29376869598537	0.690424156263798
Merged-chr15-31613230-2	chr15	31612730	31613730	+	931.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11114.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	4.22431792161197	4.35306652241883	3.97597443084773	4.12307967470766	4.19548358869015	4.04678991640075	-0.210551659801843	0.665739792431126	0.907920503949149
Merged-chr12-87470466-4	chr12	87470005	87471005	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	MTB_Mm|LTR|ERVL-MaLR	1794.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	4.93817830816001	4.93822334882164	5.00806720690288	5.44526009977713	5.43574097806463	5.17933140131093	0.84228544134446	0.0187020661765745	0.154703402169242
Merged-chr4-59467307-1	chr4	59466807	59467807	+	676.0	f0_balb.idr	Intergenic	Intergenic	-28674.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.46180167965261	4.51893050526179	4.54121402570378	4.55609949444453	4.52663071133414	4.48167325852007	0.0437197501182003	0.91700127490079	0.981497941482146
Merged-chr4-132950455-1	chr4	132949955	132950955	+	730.0	f1_balb.idr	Intergenic	Intergenic	-23640.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	3.85042745715535	4.05625232351024	4.34423634823948	3.90276134738912	4.22777111560886	4.52577292072449	0.403473327820283	0.447161207837337	0.806270036091875
Merged-chr3-51275261-2	chr3	51274761	51275761	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	B3|SINE|B2	-1500.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	4.09914348001692	3.8351915735083	4.12716469829902	4.14493818030433	4.38452249469352	3.94838072947401	0.456178204251192	0.370583126032097	0.754883488809214
Merged-chr7-90055007-4	chr7	90054516	90055516	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25857.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.13306671987065	4.92135000431078	4.95039253722896	5.2227588486482	5.21434179654444	5.2869079403214	0.480235293455104	0.184099938195898	0.567754629457926
Merged-chr1-184174632-4	chr1	184174134	184175134	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140253.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.32942109865147	3.97225455671028	3.87443235396096	3.77422259533858	3.85819850440854	4.2725341896406	-0.294044776122251	0.589533392939939	0.876892891421814
Merged-chr6-70856150-4	chr6	70855651	70856651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313918, intron 1 of 2)	Lx9|LINE|L1	11636.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	6.5820350781924	6.82848558871731	6.72788741866717	6.71689853855135	6.9642949791689	6.84712394338628	0.207601474020315	0.42410851003224	0.79246414638707
Merged-chr3-145116083-2	chr3	145115583	145116583	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2506.0	NM_001162539	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	1.96197815951013	2.11026428349449	1.90687187546042	2.17712376539681	2.00910002206452	2.25673616327632	1.13614505216988	0.240822873043082	1
Merged-chr1-16105810-4	chr1	16105330	16106330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133832)	promoter-TSS (NM_133832)	-52.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	6.52631439670989	6.633669194578	6.82407055536555	6.21610636031339	5.97189784498718	6.24942288761161	-0.849887703796889	0.00266978413114945	0.0385338071092252
Merged-chr7-35043068-2	chr7	35042568	35043568	+	703.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 13 of 14)	intron (NM_008820, intron 13 of 14)	13498.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.62033364133972	4.13930092512843	4.49249776944299	3.88519670426036	3.39370075117467	4.55756426363368	-0.195922013619523	0.860357178607408	0.967478885297186
Merged-chr14-55787907-2	chr14	55787407	55788407	+	881.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_019955, exon 3 of 10)	exon (NM_019955, exon 3 of 10)	950.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	5.37378148262878	5.24793026325524	5.29481199746453	4.99315820362386	5.42690936483862	5.16244979955201	-0.177393099736836	0.62886188616212	0.893945342282012
Merged-chr9-100434036-3	chr9	100433485	100434485	+	845.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	52488.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.99551994451959	3.65867541929994	3.84545028780563	3.31016997648135	3.09558193671132	4.04097927027157	0.0597815702970022	0.962479654182803	0.990858153530085
Merged-chr4-120826893-4	chr4	120826363	120827363	+	953.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048168, intron 1 of 9)	intron (NM_001048168, intron 1 of 9)	-1122.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	5.66249356407339	5.64316816175115	6.08438114309003	6.16621882450188	6.2047746762671	6.35818362065073	0.769283101821677	0.0134619912216264	0.123491460655759
Merged-chr5-141083890-2	chr5	141083390	141084390	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83294.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.49625219827674	5.28370405902777	5.47999598168545	5.24893719855794	5.36528683627928	5.39723005718808	-0.161693547318955	0.634789452243295	0.896354115104213
Merged-chr6-120454259-4	chr6	120453772	120454772	+	962.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8925.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	7.08451913391349	7.24789970217845	6.87684969863457	6.85825595520614	6.81817361060687	6.25846335890216	-0.613284934184318	0.038426963325867	0.242652691924805
Merged-chr5-112288527-2	chr5	112288027	112289027	+	734.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	11836.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.21049986775455	5.10023814059438	5.07337722537173	4.97455816112119	5.03815146619441	4.75797083428147	-0.40858978012661	0.278250972594072	0.675555045695919
Merged-chr9-108002543-4	chr9	108002030	108003030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-118.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	8.89377244842896	9.15839097004207	8.61719443298194	8.64904888497871	8.96448044462064	8.35837297829018	-0.308963753777151	0.238757868148615	0.635465716435083
Merged-chr12-102321453-2	chr12	102320921	102321921	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 2 of 9)	intron (NM_177620, intron 2 of 9)	37780.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.522294962087	3.30439823727528	3.39567594640212	3.23465948192062	3.21026188052134	3.57149001044178	-0.272445269392742	0.661020350735544	0.906246109292722
Merged-chr7-139387127-2	chr7	139386627	139387627	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	2.12964827865214	1.79918119026294	1.9602299034923	2.11227077439434	2.04852943601508	2.23932860669932	1.25366279343488	0.220235338867717	1
Merged-chr5-123907157-4	chr5	123906710	123907710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-65.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	8.18328635927635	8.1093188612293	7.84485855960376	7.97207481765629	8.18093183206257	7.72443561181229	-0.110689100346091	0.651354468232254	0.90278654780238
Merged-chr3-142700973-4	chr3	142700486	142701486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293560)	promoter-TSS (NM_001293560)	-62.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	5.0321471571302	4.85648459340831	4.54425647965638	4.69031736921343	4.83461109897698	4.78089512745322	-0.150164761733937	0.717179046475031	0.926979087819795
Merged-chr1-191180617-4	chr1	191180136	191181136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	2697.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.76776703480646	6.77833871283412	6.34944020865627	7.03023768752715	7.05859535453572	6.72562666380782	0.457741782029504	0.102708038173866	0.427349256944247
Merged-chr11-3535486-4	chr11	3534983	3535983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	intron (NM_001159284, intron 3 of 21)	3809.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	5.03192630969231	4.86395795982812	5.49945778182684	4.67590063335142	4.62803105546153	5.1780420261717	-0.666656678049882	0.131194223291034	0.484140896381068
Merged-chr16-38742300-4	chr16	38741813	38742813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285793)	promoter-TSS (NM_001285793)	54.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	4.53333756610553	4.20610190804205	4.31692560741756	4.8394210515622	4.43986458284943	4.29096700934288	0.469265818261205	0.321220415630975	0.714789344506301
Merged-chr12-102158836-1	chr12	102158336	102159336	+	950.0	f0_balb.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	30109.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	2.67731055046672	2.75387182445196	2.91178353845046	2.76205276607394	2.61850119672141	2.5529505450967	-0.71924948030127	0.345322425368314	1
Merged-chr7-75700941-4	chr7	75700446	75701446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-147392.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.89564901196988	6.90272721823264	6.70292090638022	6.9006951582383	7.02393148152923	6.84047832281811	0.132496471392997	0.596862805782483	0.880063799680126
Merged-chr1-87755930-4	chr1	87755437	87756437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205391)	promoter-TSS (NM_001205391)	-74.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	7.8813760022213	8.48699900533731	8.05645458579017	7.77889465492466	8.05876085069845	8.04828837549412	-0.288001613210499	0.268055353793248	0.665240807694185
Merged-chr12-26068475-4	chr12	26068005	26069005	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142000.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	3.18557674763163	3.02395967940258	3.00474290865181	3.08126051295638	2.68832937078237	2.758051331041	-1.05971561269093	0.154857410933009	0.524144738559782
Merged-chr15-31336828-4	chr15	31336317	31337317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	30942.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	6.03395823210779	5.96639133173639	5.60848300019038	5.45240934232878	5.5234420290106	5.18144605986458	-0.897614937664323	0.00945786619547867	0.0967194161768231
Merged-chr19-55841722-3	chr19	55841156	55842156	+	762.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-53665.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.95405829191849	4.31764448820709	4.12514512569471	4.20155310210017	4.04379238542194	4.71484770908869	0.534975702064854	0.305741914123258	0.701883343337569
Merged-chr12-113146849-3	chr12	113146294	113147294	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5218.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	5.6834515978965	5.29204215630967	4.97865319467121	4.32239233205485	4.03590574085217	4.46210398413707	-2.58073053518452	2.30989258407476e-08	1.93167379030846e-06
Merged-chr15-102671161-4	chr15	102670660	102671660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-113.0	NM_026468	67942.0	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	7.66122624885768	8.04579346069371	7.8645681664202	7.82265314029866	7.89985227363942	7.43256783431391	-0.179988309877012	0.479379421637284	0.824218176332717
Merged-chr10-12610121-2	chr10	12609621	12610621	+	939.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	251614.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.33699380355989	3.19903836152308	3.28117818014892	3.22457588073745	3.40036385620043	3.35240176696601	0.228103773727732	0.709427822004567	0.923970319391836
Merged-chr1-55089022-1	chr1	55088522	55089522	+	680.0	f1_balb.idr	promoter-TSS (NM_001356512)	promoter-TSS (NM_001356512)	-779.0	NM_001356512	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	6.54778792722665	6.6543170949283	6.31083293857511	6.69685425625269	6.65922768357105	6.37124305410286	0.112258871979232	0.688501621925754	0.9172299553909
Merged-chr19-38025528-4	chr19	38025026	38026026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	18051.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.97064645369506	6.75703727730133	6.45965667614937	6.23724898867958	6.27482743998014	6.4638309368786	-0.694850726013339	0.0152253551440642	0.134060460405005
Merged-chr4-34526914-4	chr4	34526405	34527405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23710.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	5.27792234513126	5.09908163241193	5.33502115203095	5.07302823177213	5.06986356558513	5.42629942041272	-0.096529084100397	0.79280379863064	0.950051439909475
Merged-chr5-97062305-4	chr5	97061797	97062797	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49299.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	5.04809043515857	4.92916520468737	5.17448419163888	5.30546727043005	5.40611395573005	5.36335090063369	0.643515919060398	0.068180414551816	0.341651895496422
Merged-chr5-114928438-4	chr5	114927909	114928909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359945, intron 2 of 5)	intron (NM_001359945, intron 2 of 5)	5169.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	5.97237856811818	5.44764967522296	5.38649122008188	5.95851834505299	5.76129359428949	5.45149019499401	0.194473791557719	0.601078895871094	0.881863080585231
Merged-chr18-31805293-3	chr18	31804793	31805793	+	822.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028866, intron 1 of 21)	intron (NM_028866, intron 1 of 21)	1236.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	4.09620851672006	4.17162151862897	4.0041982045955	4.08742017899027	3.82023976143388	4.12113908438255	-0.260670399015586	0.600525627482043	0.881705413029542
Merged-chr3-89422806-4	chr3	89422373	89423373	+	783.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011368, intron 2 of 12)	intron (NM_011368, intron 2 of 12)	1252.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	3.87546999935281	3.3418256353017	3.91832121239228	3.26961841639985	3.47305156373742	3.43162837262109	-1.20304743265799	0.0578878035889703	0.3109465618747
Merged-chr2-34577700-3	chr2	34577198	34578198	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	170847.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	3.6002040332904	3.63301377768319	3.4808970101899	3.66368489351433	3.59230351665738	3.81575908340872	0.379623273553468	0.49529312052708	0.832471821048303
Merged-chr17-17581473-4	chr17	17580966	17581966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	43023.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.56795751158209	6.36487551344444	6.50077438650993	6.21901206248105	6.2267430345825	6.3608924077742	-0.352505532386435	0.195788529300143	0.583452902586001
Merged-chr6-5163719-3	chr6	5163227	5164227	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	30219.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.09621813923401	3.01755697152956	3.49101931990457	3.08329721957896	3.04276706647879	3.30969666178382	-0.281032528540194	0.679006127159142	0.913553914280182
Merged-chr4-63562036-4	chr4	63561554	63562554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	1827.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	6.82996432985074	6.73847310213222	6.86826453246367	7.20867048970036	7.19378442391275	6.85208917993032	0.449193675270565	0.0781275765187315	0.369093248564731
Merged-chr14-73059879-4	chr14	73059407	73060407	+	831.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10793.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	2.92567706828377	2.75627370580584	2.92546642404283	2.63431326872106	2.55386700703468	2.93980922291613	-0.823852462998644	0.280482575128203	0.678459974643525
Merged-chr8-104248532-4	chr8	104248025	104249025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021028)	promoter-TSS (NM_021028)	33.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	8.10257304859201	8.43224065374586	8.08160352041489	8.29520086242222	8.42776786088859	8.01111780422229	0.0596559159291855	0.804422535115225	0.953645244705356
Merged-chr15-62045968-1	chr15	62045468	62046468	+	552.0	f1_balb.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	6711.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.64203266321875	6.91706824746203	6.75453367151783	7.08202532379963	7.23084635572849	6.4563560621844	0.308293549303451	0.313833456505697	0.708219088981505
Merged-chr11-84351456-4	chr11	84350966	84351966	+	967.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	156028.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	5.93338446209058	5.96224212558387	6.17125361252017	6.09728762250525	6.0807062110812	6.21108272973161	0.186292926493585	0.520421389341836	0.846443889918792
Merged-chr19-40660488-3	chr19	40659951	40660951	+	978.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	681.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.39637125557967	8.58641589215378	8.26438284041743	8.51288092556284	8.82465314273207	8.514636875681	0.282318862639687	0.212255426251748	0.604656850070705
Merged-chr14-70782435-2	chr14	70781917	70782917	+	664.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	8036.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.48425920273473	3.4536376728006	3.94453904725777	3.50987124156878	3.38056455451861	4.05403791728297	0.11484667319994	0.856894306488685	0.966628636076984
Merged-chr7-55962454-4	chr7	55961986	55962986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023647)	promoter-TSS (NM_023647)	7.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	8.28545043749257	8.68961424341978	8.42660072500209	8.34825929742608	8.56478525292215	8.45414960907135	-0.028481060378697	0.899546090047336	0.976656120908248
Merged-chr7-19466982-3	chr7	19466532	19467532	+	719.7023929999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-8538.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.87112385803021	5.74940554695818	6.26729189549215	6.62485687151265	6.51530530718249	6.74540716607984	1.09762471846698	0.000264529365607305	0.00629964494947127
Merged-chr6-125331834-2	chr6	125331322	125332322	+	790.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 2 of 11)	intron (NM_011324, intron 2 of 11)	10482.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	3.62571738451234	3.56573300524226	4.08857635065747	3.95046371618626	3.8107326246166	4.02279877621555	0.495153435514577	0.373613747438418	0.757529198534216
Merged-chr8-70607576-5	chr8	70607073	70608073	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	741.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	6.25528777792253	5.96612021602238	5.78521137177751	6.67913247087916	6.58469821471059	6.10582625763777	0.766830303655484	0.018333860481234	0.15277500957987
Merged-chr5-67820121-2	chr5	67819621	67820621	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	27310.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.73928466634023	3.50937445101154	3.54414855187153	3.88555908389714	3.99046957579989	4.12019905939663	1.27645027155114	0.0190766893919621	0.156572615005561
Merged-chr5-31883444-2	chr5	31882944	31883944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	185394.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.54495352496519	5.57393211347272	5.36779910669639	5.3164263278189	5.78577381998073	5.79167381097384	0.272847638368784	0.433919194686356	0.79807140318433
Merged-chr6-129232376-1	chr6	129231876	129232876	+	1000.0	f1_c57bl6.idr	TTS (NR_040265)	TTS (NR_040265)	5669.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	6.98024557272371	6.90098362918516	6.94391834932163	6.90417789364224	6.95076629726215	7.09383799956342	0.0597970947324539	0.805144420372489	0.953787743121181
Merged-chr2-60836707-2	chr2	60836207	60837207	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	44731.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	2.78408394327577	2.62079121348295	2.78106522784792	2.70011498348376	2.79532144640441	2.46227550899814	-0.344429537076297	0.666603211619892	1
Merged-chr12-51695085-4	chr12	51694520	51695520	+	875.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-3106.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	5.97841210332533	6.2570012694445	6.25342434366555	6.04143110150052	6.21282691044076	6.56042385763257	0.191337073862844	0.53573085816485	0.853668337370661
Merged-chr16-11345424-3	chr16	11344933	11345933	+	773.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	22529.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.56538311275675	5.54409520651244	5.4902728279666	5.30619151532466	5.42735925756892	5.37327984811955	-0.315200310221081	0.33770052229411	0.727586355749568
Merged-chr2-174085197-4	chr2	174084697	174085697	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	8146.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	3.9670941514384	4.13446100038655	3.91228062939719	4.1689563876149	3.78414916908019	3.98248077941494	-0.0849205011365341	0.869090225019539	0.969772902205443
Merged-chr5-99269253-3	chr5	99268758	99269758	+	832.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16331.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.72853245042032	5.9370020779121	5.73177745887565	5.27213109352041	5.52748969296466	5.49023473958699	-0.688348568548587	0.03617175769072	0.233950999916784
Merged-chr8-79415081-4	chr8	79414578	79415578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15610.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.32013112075717	4.32052559869808	4.23268280530321	4.20190708887156	3.87505294102513	4.1136582858782	-0.648762678521405	0.176952155175413	0.557594294017865
Merged-chr6-127453672-4	chr6	127453177	127454177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346512)	promoter-TSS (NM_001346512)	50.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	7.64525234417229	7.73459438025837	7.32101223338055	7.92587960095153	7.80655711543459	7.75311454071168	0.351155928236142	0.140533152857409	0.500855895102551
Merged-chr8-10911219-4	chr8	10910685	10911685	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11263.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	4.85719141195884	4.56013940363863	4.51278822335532	4.28777932052261	4.06138997197206	4.53844622001135	-0.914997251305787	0.0495588737233238	0.283084695872199
Merged-chr15-96738128-2	chr15	96737628	96738628	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38400.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.90379900648136	2.63987957790696	2.75253903967393	2.87696841580627	2.68450966675284	2.94777508124654	0.333029570306936	0.652222801169071	0.902896807825606
Merged-chr13-12468657-4	chr13	12468151	12469151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6913.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	7.78530888627396	8.1289416175186	7.6212824177917	7.82472203375172	8.18144890405644	7.61886143504825	0.0509264647514059	0.85138277801244	0.965215411919547
Merged-chr3-96557880-4	chr3	96557399	96558399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-58.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	7.18738658489343	7.03442596840442	7.4680383957353	7.43846019770875	8.02413446812952	7.76991164603528	0.782716096928212	0.00415042923464406	0.0533769576130237
Merged-chr11-87020006-2	chr11	87019506	87020506	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26244.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.48113392911621	6.3389384156925	6.20314087399359	6.33384280889384	6.77908776640742	6.48176873990288	0.327058988428934	0.261932197716208	0.659781397939417
Merged-chr16-30776462-4	chr16	30775958	30776958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176735.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.63121688222582	6.75585540994395	6.71079353146394	6.86978820041193	7.1064417354269	6.81641111083551	0.381180240850229	0.137027862398111	0.494589660876726
Merged-chr2-165917755-3	chr2	165917275	165918275	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32937.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.49776395831105	7.44406548384163	7.13433396312803	7.69645071791008	8.069343156479	7.09571944305391	0.465617954343376	0.135591097436778	0.49226685437931
Merged-chr2-153147414-4	chr2	153146903	153147903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13898.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.48623848914989	6.37642347341628	6.28422353171284	6.11084203585095	6.13808527136167	6.06558565130676	-0.470242474154952	0.0899324754956283	0.398609781123968
Merged-chr1-93804246-3	chr1	93803726	93804726	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 1 of 7)	CpG	261.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	7.37965958195571	7.2037163033092	7.09434242526617	7.20024516482217	6.92469946971633	6.72405453743558	-0.400025208835445	0.131443657821254	0.484738903514201
Merged-chr3-132755961-3	chr3	132755477	132756477	+	759.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	71833.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	5.50183691672175	5.67537229211278	5.29465663363445	5.24150750726093	5.43519151516005	5.03847293761031	-0.480279208321901	0.188578794537403	0.574203693631508
Merged-chr8-126660908-2	chr8	126660340	126661340	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-67404.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.8919596838263	3.77083263144076	3.74981597899588	3.86532919556255	3.3671923697321	3.96725348081267	-0.174444372327307	0.766453160033077	0.942467872936068
Merged-chr7-67371582-4	chr7	67371076	67372076	+	898.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	1282.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.94993016102116	7.38065295839389	6.78554889730633	7.30687038285345	7.55504897558169	7.10891138713142	0.4025496366281	0.162785378050132	0.536188662408322
Merged-chr3-22142078-2	chr3	22141578	22142578	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	65426.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.85996638677328	2.72318120394475	2.77129029668522	2.89350967023852	2.78158847114413	2.90610062031517	0.36483043610845	0.607446238168898	0.884581207370863
Merged-chr2-171329095-4	chr2	171328594	171329594	+	977.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	597287.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	3.52834125361173	3.34084535847182	3.2916937429885	3.28994479651453	3.44283757316357	3.42087101675147	-0.0295661844569599	0.960937792103031	0.990386809359123
Merged-chr7-45922422-4	chr7	45921902	45922902	+	838.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-976.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	5.91052124897933	5.90944785285528	6.52305499595471	6.23435934580729	6.17036417686116	6.18426581169494	0.105768223250398	0.744610236576897	0.936032341688524
Merged-chr13-104823329-3	chr13	104822838	104823838	+	724.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026075, intron 1 of 4)	intron (NM_026075, intron 1 of 4)	6168.0	NR_135272	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	3.59887268238353	3.5062503538831	3.65715248641372	3.64854660022685	3.55676137854484	4.34063345976898	0.975460173661948	0.109164257615036	0.441474583116984
Merged-chr2-91347870-3	chr2	91347374	91348374	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	82759.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	3.63486323905815	4.05161313418	3.77846022933947	3.7879411419835	3.64433058035271	3.94728600380644	-0.147842753980357	0.789106350527733	0.949103962283165
Merged-chr19-15924594-3	chr19	15924097	15925097	+	971.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	25.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	4.5481430278685	4.38734118388191	4.36368656728815	3.99827196403524	3.83648539596963	3.59710897375595	-1.77085895536244	0.000914628996929488	0.0168149468794761
Merged-chr11-69757574-3	chr11	69757048	69758048	+	686.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	1085.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	5.68796499576392	5.78335725857169	5.75172548537056	5.89177034220545	6.20477459669481	5.86518382309267	0.472872188606687	0.128324676571027	0.479145348536969
Merged-chr14-47359793-4	chr14	47359277	47360277	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-14083.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.77805180154019	7.01688017034318	6.87466554442723	6.67980543488964	6.97668271712338	6.56215887021917	-0.203001489201427	0.454788174642986	0.810564504041759
Merged-chr3-96502443-2	chr3	96501943	96502943	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22742.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	5.09396507435203	4.48552906189754	5.03150305396302	5.43704611017051	5.84645911663965	5.74436995545324	1.58854768178398	8.80033202465303e-05	0.00255053300977823
Merged-chr13-98815324-4	chr13	98814831	98815831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172591, exon 1 of 26)	5' UTR (NM_172591, exon 1 of 26)	118.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	8.56391304378052	8.45822310890195	8.15560833052575	8.26521052457552	8.21150747006344	8.06891831021314	-0.311616834337034	0.167931835519654	0.544130536211812
Merged-chr1-74437029-2	chr1	74436529	74437529	+	722.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	27645.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	5.21201203139422	5.06357216105001	4.50978678619616	4.75537469748558	4.74194499648249	4.57990155724906	-0.616109243034497	0.161215525241242	0.533942898863986
Merged-chr3-97204072-4	chr3	97203572	97204572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029933, exon 10 of 10)	3' UTR (NM_029933, exon 10 of 10)	23292.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.98560054804354	5.87650715467861	5.34116915352874	5.96975615754941	5.95340571169806	5.92796752934325	0.301528750083661	0.375622522391419	0.758851065703868
Merged-chr5-136116642-4	chr5	136116153	136117153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011293)	promoter-TSS (NM_011293)	-38.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	5.10303901003501	5.63087403834287	5.32515985567234	5.28883124561342	5.09904687823924	5.05182809060847	-0.451042011354025	0.233941690906459	0.630165756456608
Merged-chr7-30562813-3	chr7	30562281	30563281	+	976.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	403.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	7.27556006348495	7.6549143464599	7.55496098811136	7.60326997376509	7.869117856955	7.47058593787406	0.23451094070493	0.354770805248673	0.741862808502317
Merged-chr16-57354598-4	chr16	57354100	57355100	+	880.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	1323.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.99758835052464	5.01666435315826	5.01314277296198	5.01492297635851	5.2924163995751	5.27578540574103	0.403037547907199	0.269753403016317	0.66686579973798
Merged-chr5-105566636-2	chr5	105566137	105567137	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47166.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.73407160537524	6.42026598415224	6.33328592673365	6.66328666068159	6.4671311096383	6.08375537833795	-0.125399563067568	0.684709499212861	0.915954856200121
Merged-chr2-104494277-2	chr2	104493777	104494777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145824, exon 1 of 16)	5' UTR (NM_001145824, exon 1 of 16)	212.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	8.67780944859925	8.84475568771871	8.75305897986694	8.84966282981804	8.57305085400842	8.91893516851766	0.0342944586296824	0.872500571375909	0.970261003150518
Merged-chr15-86189272-4	chr15	86188768	86189768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	5.86736625982034	5.98325290279897	6.17669126479171	5.75188817632853	5.79335506847827	5.91390811200952	-0.335313904278516	0.27077876727417	0.667817293838275
Merged-chr2-120575394-2	chr2	120574894	120575894	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	B3A|SINE|B2	7723.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	6.27346209369442	6.28399324610844	6.26502405372796	6.63664046428476	6.94089347157404	6.79593872505199	0.844368831034988	0.00155368916942979	0.0253937081928725
Merged-chr8-10794794-4	chr8	10794288	10795288	+	870.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87666.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.16643509546099	4.26946957892481	4.45480637324171	3.82561194619857	3.8847087360256	3.94805070747244	-1.20222205592298	0.0152515052725377	0.13419131338874
Merged-chr18-89162554-4	chr18	89162040	89163040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34887.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	4.97096620499415	4.80435591781735	4.94487513695136	4.8433126282169	4.65146177519538	5.32098890533032	0.105853588458767	0.802254795807657	0.953197339007501
Merged-chr3-69691225-4	chr3	69690722	69691722	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-30833.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.55061279622118	3.27822417587712	3.65616661667753	3.74397757253006	3.6601009510304	3.966246567248	1.00883944416566	0.0832842485668169	0.381897704989954
Merged-chr11-75158691-3	chr11	75158191	75159191	+	690.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 16 of 18)	(CA)n|Simple_repeat|Simple_repeat	9461.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.98557720402068	2.80502673113387	3.27128798783681	2.85196447191113	2.55043173809321	3.18440762859691	-0.662067899654876	0.410625334994186	0.78349619906958
Merged-chr12-3890478-2	chr12	3889978	3890978	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-1266.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.48450319408448	6.56032494912814	6.35378758134321	6.40635343874872	6.47258635397874	6.16169240042312	-0.179733693402978	0.518271779710552	0.845156513047069
Merged-chr10-42501421-2	chr10	42500921	42501921	+	962.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-633.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	6.48751031556045	6.97016425762856	6.82158204260164	6.78661597917159	7.03437938398218	7.08285967452107	0.304382582625418	0.273842716032656	0.671279304608923
Merged-chr1-86509600-4	chr1	86509127	86510127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16930.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	3.68658189938005	3.47280290508156	3.57599909375897	3.34675690609887	3.07532891085297	3.64602680184675	-0.795698451422607	0.215401595279088	0.608884900801139
Merged-chr17-51790263-3	chr17	51789770	51790770	+	839.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	21784.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	3.25337466509873	3.14318889071011	3.27665996554387	3.20806819831193	3.22225752883663	3.23463059356106	-0.00705286079160255	0.990932763213443	0.998113069044251
Merged-chr9-32694415-4	chr9	32693910	32694910	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1632.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.12787678473531	3.67693341353446	3.59105869814876	3.32679548320142	3.38192676839821	3.66304694226791	-1.28201143227655	0.0362713663635981	0.234320667997544
Merged-chr2-34600033-3	chr2	34599529	34600529	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	155203.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	2.75508083580266	2.71054305743431	2.81424756513887	2.77537414143397	2.68431404864939	2.63686500346098	-0.306061681370734	0.676259447326475	1
Merged-chr2-35446297-1	chr2	35445797	35446797	+	541.0	f1_balb.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	15152.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.01818228785404	3.16640313280399	3.0555343287401	2.70545006283129	2.60333773538363	3.1276347139986	-1.25445294470815	0.1066930723244	0.435935318307798
Merged-chr12-80835076-4	chr12	80834651	80835651	+	980.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	Lx5|LINE|L1	44619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.08817651175786	5.56500304727801	5.71003592164846	6.42709257063649	6.53001757573205	6.10287026035927	0.954501711118419	0.00379441344955051	0.0499882131586762
Merged-chr15-74929068-3	chr15	74928563	74929563	+	798.755554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25988.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.32383163408594	5.40170562018572	5.35363484329907	7.15973066081474	7.25594799442354	6.85348338129426	2.94596374098903	1.70818262557319e-22	1.89512613211592e-19
Merged-chr7-100487514-3	chr7	100487016	100488016	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5842.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	4.18714019867588	3.95543595523305	4.15062071552414	3.84306241885023	3.86378254452249	4.34447311287376	-0.2112318068545	0.685701763283233	0.916412982962918
Merged-chr15-36666723-2	chr15	36666223	36667223	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57750.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	2.33956596518371	2.20028730507904	2.39537903025368	2.39892693473596	2.43369220198308	2.53271813051776	0.929315913672863	0.264328625358792	1
Merged-chr19-55657836-2	chr19	55657336	55658336	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	B4|SINE|B4	44368.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.19038609407644	4.83184328673301	4.66115933369838	4.73238077693736	4.55933536512848	4.64421381906474	-0.637210912818551	0.131298753894179	0.484397743816034
Merged-chr14-31001085-1	chr14	31000585	31001585	+	563.0	f0_balb.idr	promoter-TSS (NM_029626)	promoter-TSS (NM_029626)	-308.0	NM_001165930	76485.0	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	6.50517620988865	6.66181039527964	6.48780914837264	6.22462343980187	6.58946205622077	6.07195508390081	-0.366140168945648	0.219105665613278	0.613224645184221
Merged-chr13-94358973-4	chr13	94358462	94359462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009680)	promoter-TSS (NM_009680)	2.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	7.80182834903212	7.93315688851461	7.79900935999215	7.75481038241836	7.85582688858126	7.54116329526094	-0.167522759515949	0.459922016409811	0.814054033257842
Merged-chr11-116811837-4	chr11	116811319	116812319	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 3 of 4)	intron (NM_001347633, intron 3 of 4)	16227.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	4.01819150197663	3.70528013667905	3.85221331913429	3.47331243956655	3.35110147796316	3.82407050511085	-1.06170574849988	0.0706913735077382	0.348568166330778
Merged-chr2-163662875-4	chr2	163662366	163663366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	B3|SINE|B2	4408.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	6.44506549914933	6.28860845278323	6.12839851924542	6.54244595384814	6.59717657152642	6.51017239231538	0.406626723933314	0.137668967213332	0.496001739347931
Merged-chr11-35771311-2	chr11	35770811	35771811	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145962, intron 1 of 6)	PB1D9|SINE|Alu	1816.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	3.92384555750658	3.69967322078315	3.86302424141566	4.03726445850765	3.69225765288834	4.33269394904806	0.623535539157847	0.259378239747211	0.656942348467668
Merged-chr19-46598117-1	chr19	46597617	46598617	+	1000.0	f1_balb.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-989.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.37170845604281	3.28696263904946	3.4478867409863	3.61703995120103	3.49160303082089	3.86989080326743	1.07604210793336	0.068572313992392	0.342503457751303
Merged-chr9-108304708-1	chr9	108304208	108305208	+	580.0	f1_c57bl6.idr	intron (NM_001311156, intron 2 of 2)	B1_Mus1|SINE|Alu	1451.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	4.06901532640254	4.17642544064887	4.25785463412531	4.44191745937649	4.05626624580211	4.68213598308323	0.642284606659682	0.194016362378322	0.581296310830689
Merged-chr6-97299526-3	chr6	97299017	97300017	+	947.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 20 of 23)	ORR1F|LTR|ERVL-MaLR	-46737.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.79244341284264	3.6472815844546	3.85232601152679	3.84490485399426	3.78821141222098	4.1061369980329	0.474769619800819	0.369710194035499	0.754305613253213
Merged-chr4-131843514-4	chr4	131843027	131844027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025297)	promoter-TSS (NM_025297)	56.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	4.81344928183808	4.59976739059876	4.82151679454901	4.46772939545207	4.51658848956188	4.73946090504668	-0.412411502834848	0.322963426004223	0.716370607076819
Merged-chr6-115887025-4	chr6	115886466	115887466	+	636.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031177, exon 9 of 29)	exon (NM_031177, exon 9 of 29)	33438.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	2.59620934374522	2.52429166003328	2.71660645771822	2.4393325623181	2.66660740501954	2.72916090067553	0.0300273255933079	0.969322606468164	1
Merged-chr2-120126577-2	chr2	120126077	120127077	+	559.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	intron (NM_133838, intron 3 of 5)	27998.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	4.02571747385404	3.50116805133517	3.69556765015122	3.63540107292915	3.65553482404593	3.659254804893	-0.377351940440008	0.511595428042343	0.841459220847773
Merged-chr5-17837833-2	chr5	17837333	17838333	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-1937.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	2.77848230398851	2.60241071839647	2.72143806193633	2.77720956143961	3.19234834538381	2.98245478403336	1.50742971031069	0.0462787412444053	0.272176502614853
Merged-chr13-12409355-4	chr13	12408860	12409860	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 14 of 44)	intron (NM_144835, intron 14 of 44)	13985.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	7.11402333189504	7.07000354968494	7.1701377653	7.09953613039332	7.05006567382015	7.07848034100323	-0.0615649865904497	0.792313919035429	0.949929758256028
Merged-chr6-114842040-4	chr6	114841545	114842545	+	664.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79776.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.51837982953959	5.47097593854469	5.35535481409827	5.40197052928631	5.64066961269407	5.48025410634628	0.120004644432686	0.718609066735246	0.927412960109508
Merged-chr15-75906573-1	chr15	75906073	75907073	+	574.0	f1_balb.idr	intron (NM_029663, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	2771.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	3.179410285205	3.34476203949139	3.64939459653273	3.40528055402621	3.34615049058272	3.66962875437407	0.288100009241486	0.645163030725107	0.90045202461189
Merged-chr6-70874597-4	chr6	70874083	70875083	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30068.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	5.76644981323404	5.74353746343655	5.88807324645759	6.01152835961089	6.34685515723772	5.87533127786214	0.545126292494667	0.0833297934784772	0.382001292257018
Merged-chr12-81658243-4	chr12	81657745	81658745	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26996.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	3.37806006777883	3.32296473605659	3.52884071610379	3.55132706707825	3.52622724519433	3.54602606972351	0.500134621750536	0.385714091139352	0.76666449726431
Merged-chr10-127314052-2	chr10	127313552	127314552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2266.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	3.12621811814688	3.22191383877558	3.4626893544677	3.19203347511251	3.22483011939161	3.32074284345145	-0.106494371798817	0.865844919799639	0.968641478520565
Merged-chr10-20531893-3	chr10	20531371	20532371	+	845.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	16457.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.89654892392921	4.73157250454935	4.64518231470191	4.92751020158662	4.62781952917564	5.0453493446927	0.226057726403966	0.583717919069449	0.874225271981634
Merged-chr14-99099800-4	chr14	99099292	99100292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028315)	promoter-TSS (NM_028315)	-22.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	6.09650654633748	6.17329394891199	6.16826742667599	5.88940683101628	6.21678055622901	6.14456353250319	-0.0864798522216782	0.767595350061855	0.942632370096753
Merged-chr7-129746885-3	chr7	129746404	129747404	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44C|DNA|TcMar-Tigger	155041.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	3.70785969037434	3.86142984520008	3.90992264943677	3.44523447430927	3.3396872430238	3.34372354209681	-1.6399602778948	0.00511375981200331	0.0621357661269234
Merged-chr7-49246073-4	chr7	49245599	49246599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175272)	promoter-TSS (NM_175272)	-90.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.69631021622284	4.58150686703053	4.26203403876061	4.63170522463444	4.1038002832414	4.28357195049411	-0.443810353540553	0.359853653742482	0.746161200643036
Merged-chr12-84451155-4	chr12	84450693	84451693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173756)	promoter-TSS (NM_173756)	-169.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	5.88657764638183	6.08472278782649	6.2634835735907	6.06559169433341	6.16114604441183	5.93530468796215	-0.0237060164933653	0.937348728579115	0.986057836872162
Merged-chr10-116582976-4	chr10	116582459	116583459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	5.95692878620794	6.49147538745118	6.15732906607682	6.44487863330567	6.78583896828705	6.15106891993128	0.445690166430793	0.17896928099539	0.560321929979471
Merged-chr12-99903056-4	chr12	99902561	99903561	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18546.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	7.63045102342755	7.85891153425381	7.48358193200004	7.63878726570762	7.9600927057011	7.54049601914141	0.0882258328549108	0.726880252061156	0.930086065338964
Merged-chr7-44867264-2	chr7	44866764	44867764	+	748.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_133949, exon 3 of 12)	exon (NM_133949, exon 3 of 12)	2524.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	3.25753287321403	3.08103628567915	3.40125263757485	3.35426071431311	3.18841161350619	3.57409829598741	0.504592924266206	0.429269637718055	0.795682190695026
Merged-chr9-66351210-2	chr9	66350710	66351710	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	760.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	7.09364862756349	7.22322122430688	6.92718545082498	7.28080936470066	7.5296599286053	7.29621173752907	0.425490218683503	0.0853982574593171	0.386837509209802
Merged-chr4-32615335-4	chr4	32614828	32615828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122978)	promoter-TSS (NM_001122978)	-142.0	NM_001122978	26885.0	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	6.84746668360189	7.3066934189042	7.28256543247456	7.17657059944355	7.28078334861023	7.24926996357935	0.115056364127025	0.657839147555894	0.904859102731141
Merged-chr14-65332117-4	chr14	65331621	65332621	+	874.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26555.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.14953053242611	3.90005064063285	3.99463333381729	4.09545189429516	3.65368492564672	4.01542235080072	-0.272765877552313	0.607394172073763	0.884581207370863
Merged-chr7-25221369-4	chr7	25220888	25221888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175436)	promoter-TSS (NM_175436)	-37.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	7.348034832003	7.49591525333311	7.02187028770484	7.46728516772741	7.56235986094386	6.83512946509112	0.0407155282386784	0.892087761602659	0.974942585822634
Merged-chr7-113514440-2	chr7	113513940	113514940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	606.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	6.6607619281809	6.66152525675778	6.91426091313977	6.86036730033994	6.68601576450637	6.65791955296252	-0.00604970079293222	0.981505897344005	0.995717195177154
Merged-chr16-92869847-4	chr16	92869355	92870355	+	869.9250490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43781.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.95795944516255	5.00139799514441	5.03579306910053	4.81085371740384	4.63819438447871	5.31418572951225	-0.127816605822159	0.759989040600984	0.940572672765463
Merged-chr14-20081340-2	chr14	20080840	20081840	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	1832.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	4.78405194922146	5.03489390332933	4.84573336015183	4.58589933545819	4.61468314716905	4.67939559039718	-0.627840080362979	0.117468236866962	0.457576754516462
Merged-chr12-112873771-4	chr12	112873284	112874284	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12868.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	3.67714404176926	3.40189673263794	3.17941617754984	3.45969734136356	3.25737539456038	3.43339034699075	-0.222048178089433	0.727112850025476	0.930106435835116
Merged-chr8-71542215-3	chr8	71541709	71542709	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-721.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	6.78279131161487	6.53096839497855	6.74524745110071	6.50807117207658	6.93177798860797	6.72632677733278	0.0815572053358803	0.767990470096627	0.942754893315356
Merged-chr11-73326660-4	chr11	73326156	73327156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2019.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	7.82426694682386	8.21349410017599	7.33840675287403	7.63088873445826	7.8525244910174	7.43050929486503	-0.281529432649415	0.34532104307487	0.733676961611706
Merged-chr13-67723379-1	chr13	67722879	67723879	+	968.0	f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5794.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	4.54759682373189	4.75051900422843	4.88023090736174	4.4949161807892	4.93477031273989	4.60219894600393	-0.0548722289641338	0.899558186519725	0.976656120908248
Merged-chr3-108574207-4	chr3	108573707	108574707	+	797.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 2 of 3)	intron (NM_025444, intron 2 of 3)	2508.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	3.40133774828305	3.41597830442247	3.35097622020318	3.37274395142068	3.36184167478552	3.42228371134961	-0.0300820597761493	0.959200144704478	0.990174309444982
Merged-chr9-61947542-2	chr9	61947042	61948042	+	837.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-743.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	5.82770028834433	5.77225416780538	5.72077890660179	5.74468713630748	5.55533298865727	5.85767037708463	-0.114188483845619	0.71632514553989	0.926569584146506
Merged-chr14-118180059-2	chr14	118179559	118180559	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42932.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	5.27385322385697	5.17192898958242	4.88851045740576	4.66492180670731	4.86684647642127	4.83853682867245	-0.731009049506423	0.0622824612301563	0.324264737457067
Merged-chr11-106818552-4	chr11	106818030	106819030	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 18 of 18)	intron (NM_001166685, intron 18 of 18)	29278.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	6.85341342294526	6.84853607439752	6.25627623796258	6.15846747175083	6.31041226202391	5.76108204280226	-0.944647227704825	0.00472662815665835	0.0589203409227308
Merged-chr5-21488784-3	chr5	21488286	21489286	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 19 of 20)	HAL1|LINE|L1	-54741.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	3.52983131719927	3.63416082972806	3.72799171691624	3.87570986791582	3.86809999324172	3.79808486699482	0.736771043277829	0.166918275592605	0.542435988153521
Merged-chr3-8980496-2	chr3	8979996	8980996	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-16350.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.24156464016667	4.90443990792432	5.25062870573421	4.60870784882198	4.80503871109791	4.63914861051865	-0.976317281043394	0.0157678267038841	0.137541600207232
Merged-chr3-58691447-4	chr3	58690967	58691967	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009174, exon 1 of 2)	exon (NM_009174, exon 1 of 2)	921.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	8.03205899581445	7.7111184717198	7.30214463344507	7.92025066411501	7.47757432412317	7.62797607929975	-0.0522288535845494	0.854674431378214	0.965987623019113
Merged-chr5-113180384-3	chr5	113179813	113180813	+	910.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	2.60741293123499	2.9050217698907	2.93704975530388	2.42907726665995	2.49324827610502	2.65240331340402	-1.7268673929612	0.035263704420703	0.230512417712553
Merged-chr19-4301951-3	chr19	4301450	4302450	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4272.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.66580509002554	5.62666857619121	5.73849723788195	5.85560871639655	5.81907957291929	5.98995443836284	0.381252167830646	0.21154465906835	0.603945120913907
Merged-chr7-84151764-2	chr7	84151264	84152264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	129.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.66111404961632	4.70488871489128	4.77832826154564	5.49811099124568	4.76208541934594	5.40533433739703	1.16288187439566	0.00679304292038668	0.0764451603082952
Merged-chr3-102995690-4	chr3	102995152	102996152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025679)	promoter-TSS (NM_025679)	-88.0	NM_025679	66641.0	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	6.90272163614673	7.21402178031333	7.08128792415915	6.97691084825483	6.75185173150817	6.77325860304772	-0.360405396989993	0.160805874395075	0.533506188064807
Merged-chr17-81580622-4	chr17	81580130	81581130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	157757.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.78523950434907	5.77398419281624	5.79537842976217	5.75020006005738	5.91263413612535	5.75419383008914	0.0546240705696319	0.857420146370827	0.966747388099837
Merged-chr11-108223328-4	chr11	108222816	108223816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	120572.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	8.24725709829862	8.22098058504679	8.12742188959365	8.20418966044345	8.37308031534839	7.99370300236864	0.00748532076184496	0.973074239905052	0.993943197210219
Merged-chr8-61919886-2	chr8	61919386	61920386	+	869.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8201.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	6.07442643475178	6.13806907273607	5.95486082717597	6.25307154891115	6.38280517330849	5.69251226778667	0.164368175340425	0.618158855188485	0.889154219224894
Merged-chr7-118242428-2	chr7	118241928	118242928	+	700.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 1 of 62)	intron (NM_001031814, intron 1 of 62)	1209.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	5.66181332460814	5.9901650942739	5.62529208027711	5.82523905780372	6.29174147513129	5.95098521177242	0.473268887840135	0.156979454878007	0.527819391501563
Merged-chr11-121734924-2	chr11	121734424	121735424	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32497.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.82112950828988	7.03143159705764	7.10498692165444	7.03568763971821	7.29440734041136	7.0066832489224	0.213183206020141	0.40425953380194	0.77945770433258
Merged-chr4-6364653-2	chr4	6364153	6365153	+	980.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1027.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.18236665565799	2.99552872142951	2.67729523769167	3.07849169040631	2.77554782011296	3.01556008376221	-0.0405082774416612	0.958196983468892	0.990000537228272
Merged-chr14-73269341-2	chr14	73268841	73269841	+	757.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 11 of 26)	intron (NM_009029, intron 11 of 26)	31450.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	3.12192004217908	3.36391524064438	2.99034308755017	3.07816823910503	3.24191175762474	3.18675905511131	-0.0111824791862919	0.986660675227401	0.997073310870088
Merged-chr16-94571111-9	chr16	94570686	94571686	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	279.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	8.23559752568399	8.70064021783297	7.957034567413	8.24168537752561	8.25719306437983	7.99718728208874	-0.237569088909159	0.376699935680723	0.759336465825071
Merged-chr7-43314133-2	chr7	43313633	43314633	+	659.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	-833.0	NM_001357811	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	3.43206110980711	3.31954611275151	3.32630198262256	3.26756347982531	3.33961623521829	3.45233808257532	-0.0381062162708675	0.949347129537256	0.988193302227622
Merged-chr13-37658204-4	chr13	37657708	37658708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-167830.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.5203372164922	6.39793656174883	6.28023433039998	6.24469124728038	6.29514216129452	6.49021655026305	-0.112270166227246	0.685345128177013	0.916245399594352
Merged-chr16-25064704-2	chr16	25064204	25065204	+	730.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	5065.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	2.70186334483192	2.75109428034166	2.99458258680625	2.65047520655143	2.72075735395974	2.64815627920217	-0.744369303138991	0.321052203172811	0.714702314241648
Merged-chr6-118126769-4	chr6	118126263	118127263	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	12067.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	4.85374910758292	4.9462027255469	4.67065449395562	4.32993245074409	4.41610742759891	4.34380234025572	-1.14020870697457	0.00735364215602323	0.0810117644006859
Merged-chr2-165402124-4	chr2	165401606	165402606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	6.58225903079557	6.60097892408286	6.89498082550227	6.12463102328628	5.88789211528088	6.24284950979723	-1.00486667091458	0.000537050649341907	0.0110995803354301
Merged-chr3-84882659-2	chr3	84882159	84883159	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	18514.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.93524756709067	2.82804361742454	2.96701947033859	2.68247609764139	2.8463993530637	2.79893370983622	-0.652595382579517	0.363737045981076	0.749321188432902
Merged-chr12-86825277-6	chr12	86824930	86825930	+	901.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	59384.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.27310132295436	4.33981924398799	4.03943634899197	3.83329978917546	3.87073137563994	4.24750222335162	-0.700605309511177	0.168816810014574	0.545438812408496
Merged-chr1-60669350-4	chr1	60668850	60669850	+	937.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77038.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	6.24951252835909	6.14669323130019	6.19222058689834	5.86841393159836	5.6920471034525	5.79366650569698	-0.721891207659871	0.0136643076906051	0.124737214955553
Merged-chr17-70966240-4	chr17	70965669	70966669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24347.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.58694189074841	7.58165145839009	7.4415102973407	7.58663315722478	7.82056165048002	7.5295930266863	0.169632137449744	0.463786087579193	0.816038286358001
Merged-chr4-43966232-4	chr4	43965694	43966694	+	720.541687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	8492.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	3.12745296653145	3.04685370272721	3.18046907893815	3.08288965046202	3.18600615380825	3.41409830434352	0.47902397558666	0.457991497728388	0.812774469319506
Merged-chr19-3699943-3	chr19	3699448	3700448	+	842.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8345.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	4.14631452690555	3.89022844252439	4.15215683252912	4.06236808144497	3.98557231595397	4.12884308097695	-0.0251410978309588	0.959173273160748	0.990174309444982
Merged-chr12-111559830-4	chr12	111559317	111560317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	14585.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	4.81031646937622	4.97176917210128	4.92448582453785	5.22382578079503	5.15008437535426	4.99017354588171	0.484958359144238	0.192866449338308	0.579895624649198
Merged-chr2-153225267-6	chr2	153224780	153225780	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198617, exon 1 of 1)	exon (NM_198617, exon 1 of 1)	161.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	5.61435265589779	5.53670613640876	5.48172046353875	5.40063397134643	5.24268239539336	5.33185618355865	-0.437754561461301	0.187443646750836	0.572444063673331
Merged-chr6-106785467-1	chr6	106784967	106785967	+	717.0	f0_balb.idr	intron (NM_021449, intron 5 of 10)	intron (NM_021449, intron 5 of 10)	14620.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	3.38516029825673	3.44534084515534	3.65532938038826	3.75854732567566	3.68761757477115	3.51001739954658	0.594359809302006	0.29959902857063	0.696314831841331
Merged-chr7-127448742-4	chr7	127448221	127449221	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175163, exon 1 of 3)	exon (NM_175163, exon 1 of 3)	437.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	6.11646791065467	6.19315744629994	6.49583498519053	6.04978311950807	5.90815615991268	6.23069359981346	-0.35514500212803	0.240273034833824	0.637355287657274
Merged-chr12-16811040-4	chr12	16810556	16811556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027677)	promoter-TSS (NR_027677)	91.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	5.16187932190166	5.50854276249566	5.36624249316545	5.03965713050146	4.42657374414857	4.86053990646098	-1.19265751544201	0.00434032998786811	0.0553463696044977
Merged-chr10-117831080-4	chr10	117830590	117831590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14884.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.52026379571383	6.78213899925808	6.47180532429651	6.53162302460066	6.84310842423399	6.71860674325707	0.162340495401768	0.554877593073743	0.862989905297353
Merged-chr8-122775861-2	chr8	122775361	122776361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144932, intron 1 of 9)	CpG	375.0	NM_144932	257633.0	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	3.81191439808583	3.89437431593428	3.79452462793282	3.80304740182458	3.90863704773143	3.75944356778441	-0.0193104519820693	0.970292201930302	0.993405767524074
Merged-chr17-32891347-3	chr17	32890846	32891846	+	938.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207245, intron 1 of 3)	intron (NM_207245, intron 1 of 3)	257.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	4.86663373505526	4.93806703081907	5.19472195680287	5.26448382583128	5.22630741253316	5.25823203879773	0.528558037119432	0.147224374608291	0.51210310688152
Merged-chr11-107325781-2	chr11	107325281	107326281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-136400.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	5.70907106544811	5.50697588682743	5.26527334742021	5.28720972887974	5.25761115730447	5.19339450369022	-0.524568151073717	0.13623368966596	0.493146752362964
Merged-chr8-22860261-3	chr8	22859757	22860757	+	934.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 1 of 17)	CpG	718.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	5.85100804174099	6.01541055818554	5.75713532278448	5.83446857631318	5.87229403673092	5.91944183257371	-0.0224985531971289	0.940713168007394	0.986881313555047
Merged-chr17-6106857-4	chr17	6106356	6107356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	26.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	7.43205008937884	7.14725550587036	7.23251849256463	7.46339537394436	6.89835300954614	7.26674616409312	-0.0757892741200589	0.780898030566845	0.946078518476608
Merged-chr14-27338056-2	chr14	27337556	27338556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	2019.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.13764756983353	5.60791297602502	5.59984357286629	5.98788440931162	6.14763383631418	5.51592291470739	0.836106132493214	0.0233965786020347	0.179195739351814
Merged-chr17-45708414-4	chr17	45707907	45708907	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22058.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	2.99730070182222	2.8875678942535	2.95849576804288	3.21776203676412	3.33894292275421	3.38070136550439	1.63712983049066	0.0140690999343225	0.12724583340599
Merged-chr7-27606382-3	chr7	27605854	27606854	+	929.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331109)	promoter-TSS (NM_001331109)	557.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.19368355324745	3.79825196865797	4.42976758731454	5.32860670778854	5.79198677695034	5.76148816724049	3.56285536561475	2.22836470969296e-13	4.81604599387356e-11
Merged-chr6-99206220-3	chr6	99205747	99206747	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	60268.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.49179391859857	5.46008841915712	5.47324458467738	5.78411934842427	5.51818360174829	5.44599676236646	0.225072902507145	0.497070956720687	0.833442633454308
Merged-chr16-4757668-4	chr16	4757164	4758164	+	919.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	718.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	7.97601515214851	8.12396280488498	7.50529196036231	8.02554692457887	8.55617274857566	7.6559603245173	0.342573096303257	0.272891338138973	0.670052598674093
Merged-chr15-6733227-4	chr15	6732780	6733780	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	24899.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	4.9502654452595	4.9233881105374	5.02640308265991	4.95433088334507	4.86425630326498	4.95074800325354	-0.0950728067700997	0.799160089904564	0.952235547611109
Merged-chr19-37180704-4	chr19	37180169	37181169	+	954.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-4606.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	4.63623971220314	3.97607331074577	3.9311928155754	4.91943739143244	4.64085290072044	4.46966370806529	1.13315536400866	0.0365093717873526	0.235093004773412
Merged-chr11-99073956-4	chr11	99073423	99074423	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172564, exon 7 of 13)	exon (NM_172564, exon 7 of 13)	15383.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	5.44479878809581	5.03482708060586	5.62318527575453	5.34240236124476	5.23613037702357	5.70912760722692	0.10341630368369	0.788702800805288	0.94895503373255
Merged-chr3-126628719-4	chr3	126628233	126629233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31782.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.89626304857407	8.36285334579192	7.6824926877727	7.74658282371737	8.03464359169902	7.52939984534567	-0.321995154711829	0.255829306854493	0.65280036212337
Merged-chr1-23383912-2	chr1	23383412	23384412	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-737.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.13972283479354	4.14760234457526	4.58180582240522	4.13899185948005	4.2738613420531	4.09905215227582	-0.316865578485204	0.517008048441266	0.844460030891516
Merged-chr9-21153800-3	chr9	21153348	21154348	+	804.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3942.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.19201895961758	3.45412720416514	3.25880680636059	3.37919173720739	3.39358749008879	3.38831777994341	0.29954617978861	0.623737197564853	0.891566739256228
Merged-chr5-34660264-4	chr5	34659754	34660754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029278)	promoter-TSS (NM_029278)	-106.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	7.4906733477786	7.59847399372921	7.17903836553288	7.50625280863295	7.52773561647376	7.49795845075243	0.0978330216365128	0.684620515876592	0.915930759709583
Merged-chr12-99640352-4	chr12	99639798	99640798	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12324.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.17434153344755	5.28745203354535	5.11177010931426	6.05493171890831	6.02947844464424	6.17001032707675	1.63135222933847	5.0035824365626e-07	2.93195836184155e-05
Merged-chr2-35132854-2	chr2	35132354	35133354	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290635, intron 1 of 8)	intron (NM_001290635, intron 1 of 8)	620.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	6.416544298582	6.75937058038245	6.43498714196986	6.30363278563087	6.50491033532492	6.12127983714444	-0.358797894784184	0.223185704721072	0.617997874157436
Merged-chr17-80693018-4	chr17	80692517	80693517	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	35008.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	3.87728570329135	4.05138164739338	4.20815995148076	4.20939462115123	4.13975835528185	4.3605135188022	0.533853484452123	0.270540940032541	0.667551466052657
Merged-chr3-31109305-4	chr3	31108794	31109794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	14236.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	4.42413532596819	4.76954572154761	4.20215931676973	4.3948519754762	4.65569234400471	4.46226792628846	0.0386986906732102	0.934384040926856	0.985707838096286
Merged-chr5-93205446-4	chr5	93204947	93205947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1048.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	6.40549476751534	7.03052157261587	6.27908342275634	6.8740304348603	6.75464953187411	6.05642905687862	-0.0122925356660606	0.97330045350848	0.994013566033857
Merged-chr17-48287033-4	chr17	48286524	48287524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-13014.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	4.90516659239316	4.86979752261447	4.90946631014358	5.10928315550567	5.04077632439573	5.08063558868943	0.393860582196511	0.284363266539569	0.682070779368582
Merged-chr5-146780147-4	chr5	146779611	146780611	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	B4A|SINE|B4	14845.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.49783299339573	6.27076846944156	6.43574893870842	6.91165401959878	6.9800644707684	6.53280703471875	0.68259036356233	0.0144536227736309	0.129387524878782
Merged-chr15-97212769-4	chr15	97212286	97213286	+	959.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34321.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	6.22305906743259	6.4858332043103	6.20898136987315	6.17612151767414	6.46529229681425	6.24848012117937	-0.0138162373474368	0.962006706403439	0.990700933518371
Merged-chr3-38373895-2	chr3	38373395	38374395	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110921.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	4.28038753434664	4.59382060775618	4.2562006695128	4.06575191213295	4.28605593975181	4.18324886890801	-0.554553042282575	0.242589536220406	0.639749940727294
Merged-chr5-146822316-2	chr5	146821816	146822816	+	866.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10574.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	5.7416058646061	5.55126516973323	5.81048086129113	5.89849620488426	6.28227835959701	5.99212573041158	0.668688251527355	0.0347995063693873	0.22879245622503
Merged-chr11-90220237-4	chr11	90219797	90220797	+	934.25415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29179.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	3.77523850770253	3.33635376159357	3.43051276788452	3.47249264180639	3.1637900088593	3.32921490158167	-0.781750236071004	0.217724933174465	0.611656200779633
Merged-chr7-127210157-2	chr7	127209657	127210657	+	841.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347655, intron 1 of 6)	intron (NM_001347655, intron 1 of 6)	1258.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	5.11507487227003	5.00995895238346	5.20954711232415	5.16251652059467	5.39000369958606	5.36549687589458	0.415453337148809	0.24264626535333	0.639785480506262
Merged-chr11-70845718-2	chr11	70845218	70846218	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291141, intron 1 of 16)	intron (NM_001291141, intron 1 of 16)	957.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	5.408311325349	5.40177685691316	5.23527925591065	5.1558732154873	5.45866882612343	5.59457888050212	0.107331124674075	0.761490575892519	0.941258867861232
Merged-chr9-108662100-4	chr9	108661615	108662615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020520)	promoter-TSS (NM_020520)	17.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	5.99109648128223	5.69442516430883	6.10932043339989	5.55546375996244	5.21848286556303	5.77175817013689	-0.761040337084254	0.030694847600202	0.211824824941478
Merged-chr11-101303039-2	chr11	101302539	101303539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-753.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	3.32794640154637	3.38176982149827	2.96179140650314	3.07025665230302	3.14709192678873	3.3928087828385	-0.145274043438592	0.83224795457018	0.960616839788396
Merged-chr1-88562575-4	chr1	88562064	88563064	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037971)	TTS (NR_037971)	11047.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	3.45883476419145	2.96863005378175	3.19493111334126	3.44251194212852	3.13028120277775	2.95109919526567	-0.135623161764675	0.850520424242354	0.964967504399978
Merged-chr14-21032317-4	chr14	21031800	21032800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009502, exon 21 of 21)	3' UTR (NM_009502, exon 21 of 21)	20142.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	5.34993451898697	5.17463803353079	5.11049061054219	5.04034588269154	5.01559869853177	5.20808424341759	-0.285549514066629	0.430355353672432	0.796220434934334
Merged-chr17-29371501-2	chr17	29370985	29371985	+	558.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10571.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.02569163547953	3.57658833170345	3.70013592093972	3.9027782700975	3.42379990447085	4.01799261984525	0.056180832613657	0.925782603736257	0.983285069205362
Merged-chr12-110698765-3	chr12	110698238	110699238	+	839.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2343.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	4.5540069136347	4.46361898124699	4.49486885793103	4.59072761022552	4.81056772087268	4.51917296370161	0.368108836221021	0.383988839328403	0.765200415347569
Merged-chr11-74829260-2	chr11	74828760	74829760	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1664.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.34171821623209	7.17842836982737	7.1716270394415	7.15758067592306	7.33389761981713	7.43023565265003	0.110591119928191	0.643990782003169	0.900016543869792
Merged-chr3-59241754-4	chr3	59241265	59242265	+	960.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 20 of 43)	intron (NM_177855, intron 20 of 43)	21220.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	5.23275156521797	5.31566063641682	4.80957792750762	4.78742685437248	4.8181615326413	5.1320755622908	-0.505633165758074	0.209877120607809	0.601787200098326
Merged-chr9-44180446-2	chr9	44179946	44180946	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	45788.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	2.56967129655391	2.99018889958241	2.87732995742139	2.97972925022493	2.70853794819964	3.12441493248013	0.57483042232742	0.459131425199248	0.813409577532715
Merged-chr11-88047653-4	chr11	88047166	88048166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173374, exon 1 of 4)	5' UTR (NM_173374, exon 1 of 4)	293.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	7.64007696104157	7.92597026740818	7.93053185507995	8.0454422874761	8.2886189923163	8.15714476825626	0.472314138631524	0.037637970430643	0.239854502840847
Merged-chr6-126921718-4	chr6	126921201	126922201	+	777.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207210, intron 1 of 14)	intron (NM_207210, intron 1 of 14)	138.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	2.66324355645674	2.42982885702946	2.65209463154539	2.47825868407196	2.38976543032451	2.60219479620314	-0.569489639045894	0.477051447143236	1
Merged-chr8-79030514-6	chr8	79029930	79030930	+	916.1203609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	CpG	1993.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	5.63783715316724	5.6124704317337	5.46646504040244	4.50896044443483	4.07128631298946	4.32623533606038	-2.96584428010772	7.21327962410424e-12	1.20281076345183e-09
Merged-chr8-71671737-4	chr8	71671254	71672254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029873)	promoter-TSS (NM_001029873)	3.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	4.84361203368143	4.85865322517068	5.11731839859252	4.99492146894697	5.04814140399669	4.74597843071739	0.0215474614289205	0.956147694158071	0.989807313282509
Merged-chr16-23274658-3	chr16	23274045	23275045	+	771.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-15925.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.39679468144661	4.08743660223193	4.379836346122	3.93598707226009	3.85965900848272	4.56158362141761	-0.393691730903094	0.463423397904536	0.8158640892401
Merged-chr8-120589270-4	chr8	120588787	120589787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178856)	promoter-TSS (NM_178856)	-212.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	4.70543828146806	4.89813019046418	5.17321996988696	4.96671555417566	4.75802125847154	5.04551574037085	-0.0177440273474053	0.964949612654093	0.991706426018327
Merged-chr16-42876216-3	chr16	42875719	42876719	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-457.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	7.6458199188446	7.50623860740244	7.05503021357032	7.89171904429511	7.57537089659473	7.30886847195235	0.268032379089583	0.349430816843569	0.737499871486835
Merged-chr5-137881868-2	chr5	137881368	137882368	+	614.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10110.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	4.36236469129324	4.19912622530405	4.23588655082454	4.27722144422147	4.15295177540163	4.25827728866541	-0.115955712597768	0.800133576150786	0.952408432552781
Merged-chr19-23141616-3	chr19	23141121	23142121	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010638, exon 1 of 2)	5' UTR (NM_010638, exon 1 of 2)	395.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	8.391564628918	8.45774183370136	8.23894691361935	8.31447048858492	8.38447035924141	8.04397903911423	-0.149919736826962	0.498522142224482	0.833906889616924
Merged-chr16-94380674-2	chr16	94380174	94381174	+	947.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009441, intron 1 of 45)	intron (NM_009441, intron 1 of 45)	-9659.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	2.73370521934378	2.84825341609271	2.64074083255512	2.76772584506888	2.76060824646512	3.2422350009053	0.93528984134919	0.224017624948987	0.618798211889763
Merged-chr4-120925837-4	chr4	120925260	120926260	+	992.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-755.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	7.15061872381461	7.05512513751814	7.14486580915868	7.03568752106801	7.56379310434466	7.21472472707394	0.274174729665918	0.297287597117276	0.693896220958072
Merged-chr18-6151049-2	chr18	6150550	6151550	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14952.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.43462885123631	4.48159103630179	4.55868583059917	4.57261537227887	4.35326781129109	4.84689590804962	0.255868261786925	0.56304670396607	0.865762574483528
Merged-chr11-46798492-4	chr11	46797967	46798967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12332.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.69676681430338	5.52098301903624	5.54394541861995	5.77270045909554	5.67432264274967	5.79422974355382	0.279317282079521	0.375612201354935	0.758851065703868
Merged-chr13-37881743-2	chr13	37881243	37882243	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	MTD|LTR|ERVL-MaLR	-6691.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.86093756120896	3.59258380235	3.76802793298567	3.88128011929859	3.7195658846402	3.93672634108981	0.319637119397112	0.550596862097452	0.860709619458349
Merged-chr6-72154709-1	chr6	72154209	72155209	+	542.0	f1_balb.idr	TTS (NM_011375)	TTS (NM_011375)	-31512.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.80269528659198	4.84860374172587	5.1334000164096	4.95250248583877	4.75242015787313	4.65439854800703	-0.29232830049576	0.468381413924965	0.81857303332987
Merged-chr4-41390338-3	chr4	41389858	41390858	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290454)	TTS (NM_001290454)	38395.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	2.45017992042373	2.49579158192275	2.52679324950204	2.20326384837999	2.33464863065753	2.34492481748976	-1.28301176257361	0.132759021796555	1
Merged-chr8-13758115-3	chr8	13757608	13758608	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	452.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	6.85406718653815	7.15844854405847	7.01692927228523	6.83770615943837	6.67763410339707	6.71124650442234	-0.422844224547953	0.0984463074236464	0.41841029007527
Merged-chr7-55850956-4	chr7	55850475	55851475	+	898.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	8904.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.99871700938383	4.56720695942898	4.82198605444445	5.26064010924712	5.12357520720076	5.46873769029369	1.00865793464819	0.0112454655827566	0.109261174709249
Merged-chr7-25122417-2	chr7	25121917	25122917	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	10043.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	4.2347560017627	4.38433934944602	4.18425793323413	4.4321788798558	4.07699187121872	4.55381040743789	0.223076321641429	0.641091507244576	0.898770428668406
Merged-chr10-19506623-4	chr10	19506104	19507104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152785, intron 2 of 2)	intron (NR_152785, intron 2 of 2)	11961.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	5.3875816330907	5.19478385246796	5.65147158736581	5.51213095572778	5.02109384248453	5.38687457806541	-0.194768352285054	0.607700133482298	0.884677514684029
Merged-chr3-119745950-1	chr3	119745450	119746450	+	755.0	f0_balb.idr	intron (NM_001310711, intron 7 of 13)	intron (NM_001310711, intron 7 of 13)	37438.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	3.4405666691629	3.32485655929667	3.3333903856043	3.52814869337774	3.25641038191889	3.7696064776608	0.58641424953087	0.34301608389991	0.731856773485056
Merged-chr6-126910916-4	chr6	126910412	126911412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	10927.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	6.1381726354443	6.35892307085613	6.15211745134514	6.39689065542211	6.48204409766314	6.07736426829873	0.195337834693265	0.506562729855946	0.838470324751826
Merged-chr18-12643669-5	chr18	12643053	12644053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028341)	promoter-TSS (NM_028341)	20.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	5.26145783380678	5.3024156771723	5.02917181774608	6.16118635515969	6.08920131029201	5.99132815864856	1.60190496584694	1.21944141249876e-06	6.44836615600864e-05
Merged-chr3-130761601-2	chr3	130761101	130762101	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31203.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	3.0353850070719	2.98226965335461	2.8952276347813	3.01254252467584	2.81584283438601	3.08822719575697	-0.0170580846412305	0.980285289234219	0.995500659055379
Merged-chr11-114886357-2	chr11	114885857	114886857	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3684.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.59538060458851	5.90400422614615	6.1261778378564	5.93197759446804	5.70514794452732	6.06257290796925	0.0269025908736674	0.935573224674101	0.985869643214979
Merged-chr10-81357489-4	chr10	81357013	81358013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	22.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	7.60045209282858	7.6394007588622	7.17409990741658	7.68571723197814	7.60483937772372	7.23178684837429	0.047262370100239	0.859879679462114	0.967435965660262
Merged-chr15-78304029-3	chr15	78303529	78304529	+	944.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	1692.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	5.92776264426514	5.9415539310417	5.66913060807564	5.71351227373977	5.49087205160189	5.10788239525997	-0.709274285086561	0.0460383266314368	0.271319291900885
Merged-chr16-38475693-7	chr16	38475176	38476176	+	907.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	16743.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	6.61097573796744	6.99864270673835	6.71187210332734	6.55081867678882	6.68558066605657	6.62348042567876	-0.261832380674438	0.332706594169627	0.723779714179883
Merged-chr13-99006402-1	chr13	99005902	99006902	+	1000.0	f0_balb.idr	Intergenic	MLT2B2|LTR|ERVL	-21837.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	7.17020946229082	6.85857240302873	6.87235110216257	7.18479884184184	6.78360294708543	6.88657401372525	-0.0254745668649783	0.925128627049636	0.983120489108249
Merged-chr4-120935972-1	chr4	120935472	120936472	+	826.0	f0_balb.idr	intron (NM_001005788, intron 3 of 5)	intron (NM_001005788, intron 3 of 5)	-10967.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	3.41246286002682	3.08922221499005	3.4087083820862	3.1827228755043	3.02906587476645	3.01858947233061	-0.981492693817784	0.140747497905277	0.501276283255673
Merged-chr19-47864906-3	chr19	47864420	47865420	+	701.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-625.0	NM_030051	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	4.63712826777101	5.05427673279973	4.93938992780554	5.05079271531917	5.36917413923207	5.17755989245551	0.682370199177207	0.0828084048504675	0.380659728788338
Merged-chr7-13034089-2	chr7	13033589	13034589	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153796, intron 1 of 3)	intron (NR_153796, intron 1 of 3)	688.0	NM_001360733	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	7.11206859392346	7.4451150049038	7.39753814908493	7.2082244796897	7.43847790968238	7.79724018099268	0.256158799463756	0.344805279544989	0.733368210920794
Merged-chr14-65347069-3	chr14	65346538	65347538	+	886.0944210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11638.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.41591186807424	4.08107140516056	4.40136338993601	3.80306564196503	3.9021516411801	4.12362620920095	-1.04224698186974	0.038751267696369	0.244077383635537
Merged-chr11-59162723-2	chr11	59162277	59163277	+	761.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270791, intron 1 of 1)	intron (NM_001270791, intron 1 of 1)	968.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	5.76265837281785	5.91869524050567	5.80716884219726	5.82582460802642	5.86461899284291	5.73923393193513	-0.0313836197129766	0.917547353281887	0.98166801957001
Merged-chr9-62952885-1	chr9	62952385	62953385	+	571.0	f0_balb.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	27994.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.37503009506407	4.37479372301508	4.24962260417979	4.29011797878793	4.09238209018708	4.22521085842873	-0.374882403550561	0.412675413924677	0.784551818322662
Merged-chr19-4202435-2	chr19	4201935	4202935	+	707.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-832.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	5.80058573691251	6.06573819609683	6.04262953810389	5.94481351081281	5.85288451183024	5.59547119735505	-0.279147503750605	0.376169086615909	0.759088227619915
Merged-chr13-99325520-2	chr13	99325015	99326015	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	19163.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	2.92556289645172	2.7262048000136	2.95666966187188	2.71822848636309	2.73298577676057	2.91205536805473	-0.427460460258876	0.554263438952957	0.862722382579104
Merged-chr5-148465544-4	chr5	148465064	148466064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65660.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	6.26283712357456	6.44819782242566	6.69130314993342	6.31555643589337	6.34923225195059	6.65841662506034	-0.0465463667172968	0.873374079651972	0.97040331531529
Merged-chr9-69706076-4	chr9	69705567	69706567	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54873.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	3.41893729230374	3.5423903196921	3.62424313592172	3.59308112507847	3.48415376632298	3.53564507276285	0.0351185295111611	0.950672711500938	0.988462504713506
Merged-chr12-32127535-2	chr12	32127035	32128035	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66256.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	2.23169084496347	2.38784169409907	2.44218810469104	2.22739949495453	2.2277751793852	2.26024727169291	-0.803997894208746	0.347816157925387	1
Merged-chr2-167947535-2	chr2	167947035	167948035	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	15208.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.33868857883589	5.69619057086428	5.23002163734302	5.4363832788472	5.35787307317264	5.51275887685848	-0.0332912007858234	0.925272640319182	0.983166193538686
Merged-chr11-69784550-2	chr11	69784050	69785050	+	561.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029348)	TTS (NM_029348)	11387.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	4.39601695602492	4.40002149173831	4.77478304583003	4.28955974981232	3.95571627966389	4.38440403352432	-0.826235214726372	0.0872703542011931	0.391692735982139
Merged-chr2-150218104-6	chr2	150217596	150218596	+	815.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142411)	promoter-TSS (NM_001142411)	-3.0	NM_001142411	245174.0	Mm.378428	NM_001142411	ENSMUSG00000060336	Zfp937	EG245174|Gm4979|ZIPO-I	zinc finger protein 937	protein-coding	3.30764707231317	3.2479681851558	3.33005904897446	3.20805976770797	3.13097955534361	3.11295073317835	-0.601090891425535	0.337528167294424	0.727414835127997
Merged-chr14-70797243-3	chr14	70796776	70797776	+	797.738892	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22895.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.27501915580379	3.2261626998028	3.95126529912261	3.87214293221075	3.34248123130733	3.83851145691412	0.600931442832904	0.376369141265654	0.759175760202243
Merged-chr5-88676218-4	chr5	88675687	88676687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178700)	promoter-TSS (NM_178700)	-16.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	6.81979353083889	6.46514794292036	6.32195449592459	6.53725661081648	5.9954120433059	6.12436264591608	-0.520897625349049	0.104554010482622	0.431512826954913
Merged-chr5-117160639-2	chr5	117160151	117161151	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	27063.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	6.22058191771628	6.11818707130711	5.75216614491304	5.88573863743289	5.9639276156751	5.58207574693821	-0.390741909516652	0.23423746105848	0.630430842226563
Merged-chr1-36947659-4	chr1	36947169	36948169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8142.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.96692224473069	6.91691695304574	6.37068233229741	6.85835417768565	6.70790621772278	6.58522831416144	-0.103683326626634	0.723342775788518	0.929040760790476
Merged-chr17-35167296-2	chr17	35166796	35167796	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	3.81894367531392	3.40179142987368	3.95323742594114	3.65198824173368	3.90270895803	4.31607141602566	0.73484935939196	0.223379229987946	0.618087468987021
Merged-chr2-26930603-4	chr2	26930117	26931117	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2894.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	4.8367060685763	4.55667213086624	4.56043931470701	4.6241852975093	4.84445751286736	4.62792017571734	0.11213590130106	0.789415111596613	0.94921167421876
Merged-chr5-107923043-4	chr5	107922539	107923539	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	22511.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	3.65140887630345	3.94958680715284	3.97895846888419	3.87301472767299	3.73270713683545	4.09222606477384	0.105573586005339	0.844142781385006	0.963711687630021
Merged-chr2-164493696-4	chr2	164493150	164494150	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026797)	TTS (NM_026797)	-3875.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	7.16486832815875	6.95765577157566	6.80361117081889	6.70535223493925	6.9193332082251	6.5807869709284	-0.369184976791839	0.171320906087015	0.54932102877065
Merged-chr11-117883121-3	chr11	117882614	117883614	+	817.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9588.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.83843270123495	4.95881285998759	4.88762550745972	4.79061073886595	4.60509027923768	4.87998394308538	-0.325499786065839	0.408704385055571	0.78226656710381
Merged-chr9-113812134-2	chr9	113811634	113812634	+	717.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286602)	promoter-TSS (NM_001286602)	-452.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	3.56543935219795	3.47562181067466	3.52518081609683	3.31099724016313	3.57930759584107	3.37261379750747	-0.326017807840091	0.582619254148429	0.873817630599109
Merged-chr6-52954715-2	chr6	52954215	52955215	+	807.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45095.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	3.86232429147795	3.83816346818725	3.94919072866104	3.81949283328751	3.99226531625549	3.96956999600714	0.155953343161604	0.757760551122135	0.939934406728739
Merged-chr3-79180940-2	chr3	79180440	79181440	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31979.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.55466597088507	6.25781287895011	6.0595138421978	7.37228551160869	7.54733455043216	6.96753391822457	1.55889472398213	2.44838815187704e-07	1.56591453759712e-05
Merged-chr13-93355291-4	chr13	93354809	93355809	+	974.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 4 of 9)	intron (NM_147176, intron 4 of 9)	47275.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	4.53504267701915	4.35038687542918	4.64817501558211	4.30364093333096	4.2446639663057	4.56016943157332	-0.368262185425859	0.412481717403494	0.784515731598663
Merged-chr15-86274364-3	chr15	86273863	86274863	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-3312.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.49401524553509	6.57567963193145	6.03433234436567	5.64569106654811	6.02890885040075	5.84662242687234	-0.920615861898278	0.00463275434500627	0.0580983004580681
Merged-chr4-103121163-2	chr4	103120663	103121663	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	1773.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	5.7871434479015	6.18546420806686	6.01288378063456	6.50467384669221	6.49380307757649	6.61335492544336	0.875458423011729	0.00267580770465608	0.0386006601055866
Merged-chr4-122835839-4	chr4	122835350	122836350	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	-377.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	6.05893379937295	6.2187580155466	6.19115366842733	6.46182096860664	6.24823297030773	6.09903697754524	0.211724942060697	0.463742288142045	0.816038286358001
Merged-chr11-110480179-1	chr11	110479679	110480679	+	554.0	f1_balb.idr	intron (NM_001356346, intron 1 of 11)	intron (NM_001356346, intron 1 of 11)	839.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.80961111614736	2.87438814797903	2.87201268880385	3.24870378643977	3.0994560072984	3.24413190603553	1.62741363154219	0.0181892446028842	0.151972152316175
Merged-chr7-145279790-2	chr7	145279290	145280290	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 2 of 22)	intron (NR_132643, intron 2 of 22)	4221.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.18674734337378	2.15513826788675	2.41013883913595	2.1817769413471	2.01274756932778	2.54514629677424	0.0693684389395724	0.940811848238903	1
Merged-chr15-99835298-4	chr15	99834764	99835764	+	929.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-15115.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	5.90699228587357	5.87863003117862	5.63996432520008	5.4266423750564	5.05522793408877	5.27912457485383	-1.07648600850485	0.0016745869222721	0.0269306201446496
Merged-chr2-152692086-4	chr2	152691581	152692581	+	868.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	4933.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	4.01849039788948	3.919822764979	4.08903229626533	4.10919341678396	3.87232606679629	4.20170354925761	0.154459841579804	0.756706934634789	0.939678097738881
Merged-chr4-130795116-4	chr4	130794614	130795614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	2577.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.3682857068375	8.38865865880698	8.22946348939078	8.36154571690216	8.75645957551675	8.04470782725849	0.136583587734893	0.595331757707934	0.879471010823782
Merged-chr7-44952943-4	chr7	44952431	44953431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 6 of 10)	intron (NM_001077591, intron 6 of 10)	9691.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	4.44222392293151	4.23409091503731	4.6296435681193	4.40982720208945	4.2986303393764	4.45809929400614	-0.129293887802275	0.774307857455932	0.944410199252329
Merged-chr19-3923815-3	chr19	3923296	3924296	+	842.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026316, exon 2 of 10)	exon (NM_026316, exon 2 of 10)	5920.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	6.15427714758015	5.32218031336209	5.91055455553767	5.60121961860237	5.69633101046746	5.75343676883823	-0.286797519290131	0.441558956845505	0.802718701387358
Merged-chr12-3897347-3	chr12	3896861	3897861	+	941.738098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 11 of 23)	exon (NM_001271753, exon 11 of 23)	5617.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.26697560700566	4.27046310897529	4.46873749609624	4.56708859787982	4.43456311764075	4.40805673888863	0.366048676092987	0.405059027320843	0.779953984803478
Merged-chr17-45626323-2	chr17	45625823	45626823	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24221.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	5.28845084527807	5.37791049342298	5.85281975756076	5.97208899932526	6.3547293801818	6.02893119100028	1.11381112938029	0.00125563238444366	0.0215065169709322
Merged-chr2-22806504-3	chr2	22805978	22806978	+	756.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	32151.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.29123448064602	6.3826077423587	6.64811731159404	6.43825080928486	6.59739159321045	6.39715019571687	0.0764964565096293	0.783947689840228	0.947376685867648
Merged-chr17-51209751-4	chr17	51209261	51210261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30409.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	5.38873282245668	5.55848432703828	5.93708771827881	5.7896714295715	5.59289687946433	5.95372965628995	0.260826857596397	0.453216950809971	0.809701014116181
Merged-chr15-101974680-4	chr15	101974174	101975174	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20387.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	7.13579474005214	7.18761119662482	7.63095053866102	7.26953146132732	7.41104985293852	7.40234362091128	0.0503336645175849	0.845879933771916	0.963945177091542
Merged-chr5-3344481-4	chr5	3343959	3344959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009873, exon 2 of 8)	exon (NM_009873, exon 2 of 8)	566.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.62876981778457	7.83106941663542	7.30302882610657	7.38942425445252	7.62679999113814	7.07693065789331	-0.319553377922962	0.250435629854541	0.647794326316112
Merged-chr16-58479177-4	chr16	58478706	58479706	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44220.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.97510392231783	5.85871513140854	5.90871064720666	5.9940448698873	5.95397042115504	5.89721975982615	0.0632857748963345	0.829174227860027	0.959990063227229
Merged-chr4-11580164-4	chr4	11579647	11580647	+	838.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256142, intron 1 of 1)	intron (NM_001256142, intron 1 of 1)	485.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	4.43799846968971	5.10556158850249	5.0913082377858	4.77101576024573	4.86005984287951	5.05789831337619	-0.0326410633184323	0.941161486925689	0.986908937621943
Merged-chr18-68148572-3	chr18	68148054	68149054	+	909.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	L2a|LINE|L2	-79392.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.01037601105926	2.93240628872481	3.02143523490529	3.017050161043	3.04002794624352	2.84686528591416	-0.0529780150260299	0.938151692080309	0.986279451858875
Merged-chr19-43530348-4	chr19	43529853	43530853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5748.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	6.13747428501251	6.31198684312422	5.67953850705478	6.10465629367703	6.42024687892839	6.10576027447223	0.239983333819406	0.467780317018365	0.81815434317961
Merged-chr13-48965128-3	chr13	48964623	48965623	+	842.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	Tigger15a|DNA|TcMar-Tigger	2705.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	5.88690079950395	5.88568972319636	5.93414125149276	5.75700683198954	5.97795940195712	5.87576643625888	-0.0396566544225791	0.894742929496146	0.975576532925631
Merged-chr10-118097266-2	chr10	118096767	118097767	+	791.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-44520.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.93510810268362	7.92264343962555	8.01239630101611	7.99146174756144	8.17557314639365	7.82547707534958	0.0814840090246995	0.714653007580304	0.92601294778158
Merged-chr12-80792325-4	chr12	80791829	80792829	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	1797.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	7.37528292733244	7.65901694965991	7.08248735410034	7.70712393863584	8.0989466234893	7.52389712006398	0.58678710652039	0.039075522005079	0.245151808733105
Merged-chr6-54815563-2	chr6	54815063	54816063	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	3.99114310500691	4.3083659760338	4.61963839973176	4.30198480114074	4.14559786119613	4.64810475271176	0.130862504131138	0.796924113926157	0.951572880317229
Merged-chr12-8946098-2	chr12	8945598	8946598	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1831.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	3.20813443886371	3.04714856699814	2.84432058989614	2.98325640963011	2.80116554281103	3.04337854648217	-0.486985344115192	0.493252856054333	0.831208279358962
Merged-chr9-21288627-2	chr9	21288127	21289127	+	888.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	-658.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	5.68243166390909	5.50638950395642	5.51090103396348	5.6374196694112	5.96378338017988	5.65992237970769	0.369733834795649	0.25975897645397	0.657340862892914
Merged-chr5-34549401-4	chr5	34548877	34549877	+	578.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145859)	promoter-TSS (NM_001145859)	-199.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	3.76951893453305	3.67409110483893	3.94380698975798	4.07723418384772	3.36175336953724	3.76567872213807	-0.0908135575422613	0.880363417644552	0.972509150541233
Merged-chr5-105702077-4	chr5	105701578	105702578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	1268.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.62254774360379	6.36147036573818	5.87891212728639	5.99238136624719	6.12370781983974	5.83411030101184	-0.571411577519771	0.0873866177691227	0.391939720317657
Merged-chr12-78980880-4	chr12	78980373	78981373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	intron (NM_178745, intron 1 of 2)	2605.0	NM_001170401	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	7.40677315961591	7.47476587345072	7.28741695737285	7.49878028620377	7.6397409665039	7.46538929159538	0.21260639961243	0.352701619925122	0.740241042998777
Merged-chr3-37361211-4	chr3	37360699	37361699	+	883.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12546.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	3.10282253369602	3.16563389167127	3.55663841229603	3.52820214633186	3.41818601252194	3.8638857645615	1.23558642076759	0.0560689307796719	0.304927032177447
Merged-chr13-112366905-4	chr13	112366406	112367406	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	78388.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.78495706698686	3.46010524259316	3.3952415071255	3.38782180929971	3.40880617625464	3.68376996345425	-0.249561319367104	0.679826350758705	0.914056754309378
Merged-chr19-5426521-2	chr19	5426021	5427021	+	828.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_134149, exon 2 of 2)	exon (NM_134149, exon 2 of 2)	1377.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	3.89057031432646	3.74880008215499	3.92663696103507	3.99945332448144	3.88632188273773	3.79271252214483	0.140517040273772	0.784844555786509	0.947770123968912
Merged-chr4-149295791-2	chr4	149295291	149296291	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	11907.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	3.65649462001083	3.54132215164745	3.54622019357201	3.45530300561623	3.46101570928102	3.33267632329233	-0.59605256470797	0.304334976902335	0.700869191500083
Merged-chr4-47262188-4	chr4	47261677	47262677	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	54165.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.57072889200766	4.39175374417974	4.12302930960447	4.4489539273533	3.89633909739712	4.3358000649372	-0.362620883303534	0.477475235834454	0.823237639056184
Merged-chr5-74957862-4	chr5	74957364	74958364	+	847.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8670.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	5.07449311158265	5.7315346119548	5.55172379010614	4.91548491302353	5.16204872535314	5.13207639122345	-0.813847546895164	0.039068827105617	0.245142822245998
Merged-chr17-31996435-2	chr17	31995935	31996935	+	835.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	38073.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	3.12958281172097	2.79668054527914	3.11212096578629	2.81172173547375	2.89667400899169	3.34360308036917	0.0598009829389292	0.935397039959004	0.985852245513165
Merged-chr3-79288284-4	chr3	79287777	79288777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57099.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	6.58917344602759	6.6687894836626	6.4699060757758	6.33205855345018	6.81914003777822	6.69960215013795	0.0867599643740116	0.759905328260537	0.940572672765463
Merged-chr11-69123629-4	chr11	69123152	69124152	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033041)	TTS (NM_033041)	-2725.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	6.6209082236102	6.3878588336114	6.38367409055262	6.61044765375262	6.7977366056851	6.62404000042474	0.338586881128585	0.207105262532186	0.597920729067479
Merged-chr18-76228149-4	chr18	76227653	76228653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13548.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	4.1158670343447	3.84497703708331	4.02558325264157	4.30530812838162	4.18045309354749	4.44917675313455	0.872601026357562	0.0727072491177667	0.354230439448432
Merged-chr15-98761320-4	chr15	98760824	98761824	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1668.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	5.91056367187465	5.7460110728332	6.01615436666307	5.90035718156707	6.15157863541005	5.78703244565271	0.1387842378999	0.657820655995384	0.904859102731141
Merged-chr8-123028531-2	chr8	123028031	123029031	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	13753.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	7.93380780760346	7.7612537891732	7.53559882860911	7.69330611646103	7.83779179475757	7.55173667294313	-0.0789222456776342	0.742866727062222	0.935368371900894
Merged-chr11-87426447-4	chr11	87425975	87426975	+	963.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-1116.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.87687971675345	7.76012640675564	7.54087410590372	7.89235772786034	7.91871446569929	7.24229025063228	-0.009751693384863	0.972007912225402	0.993868590220018
Merged-chr3-100440888-4	chr3	100440387	100441387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14482.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	6.39849311463516	6.83364376506031	5.78996543672679	6.94068962752311	7.14735259105918	6.3198968887558	0.690004004400574	0.275301504533012	0.6727741663245
Merged-chr4-147849216-2	chr4	147848716	147849716	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-798.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	4.82189727143273	5.29838368233278	5.03702154557715	5.03260060434034	5.00669771790412	4.57934054550748	-0.368146031492271	0.382166518544657	0.763819347060188
Merged-chr5-87204520-7	chr5	87204064	87205064	+	976.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	50224.0	NM_053215	112417.0	Mm.160362	NM_053215	ENSMUSG00000057425	Ugt2b37	0610033E06Rik	UDP glucuronosyltransferase 2 family, polypeptide B37	protein-coding	5.71495602874171	5.70939198565663	5.43368174938217	6.26433031784961	6.60622128938798	6.05455381955575	1.2189300895594	0.000205813160921723	0.00513502293672406
Merged-chr16-57211287-4	chr16	57210804	57211804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 4 of 17)	(TC)n|Simple_repeat|Simple_repeat	-9833.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.36004212896152	5.99069792811343	6.11176399091015	5.84137208892967	6.21588887035219	5.96720828268612	-0.237015344378662	0.449413870153303	0.807765354206928
Merged-chr9-13523178-2	chr9	13522697	13523697	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91836.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	3.13062807303291	2.96860686373051	2.84662306923136	2.9411962193864	3.00436446699838	3.04405653218531	0.0192454794503389	0.977679597378542	0.994893491053568
Merged-chr15-28405367-4	chr15	28404872	28405872	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 61 of 78)	intron (NM_133365, intron 61 of 78)	201606.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	5.26452573691112	5.28283279568671	5.3068507646722	5.23797926151825	5.10967748637975	5.42906291701818	-0.06014645599493	0.864026718867877	0.968269312109804
Merged-chr13-42075734-2	chr13	42075234	42076234	+	721.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	23713.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	3.24526191598885	3.32380258629189	3.27017487584766	3.69132903457708	3.86746752182501	3.73663057444884	1.82536065237971	0.00211080678761652	0.0321736602278798
Merged-chr6-26766890-2	chr6	26766390	26767390	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	835464.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	2.15175563926508	2.35552233530373	2.32237750112141	2.00120258924484	2.05327815307289	2.06606258124677	-1.87224035754858	0.0512508447000431	1
Merged-chr9-44568259-3	chr9	44567741	44568741	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36651.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	8.4366334006741	8.3394746776843	7.92319884486601	8.32392438539401	8.5092998693229	7.97100367728313	0.0503147339375381	0.847414499108711	0.964318271116593
Merged-chr7-102426496-4	chr7	102426027	102427027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 8 of 11)	intron (NM_009287, intron 8 of 11)	-15168.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	4.88104488883415	4.80965700887987	4.99716753391383	4.44188407282232	4.75466645168216	4.81592253898395	-0.48751487082654	0.234180164289062	0.63036877369004
Merged-chr17-20945266-4	chr17	20944756	20945756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016891)	promoter-TSS (NM_016891)	-198.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	7.50488507953695	7.61864996052703	7.42232909628508	7.73404715624836	7.68326659045147	7.42510768284676	0.153711373309167	0.510543315587486	0.840913896104428
Merged-chr8-46756021-4	chr8	46755513	46756513	+	749.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16268.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.31401719220718	4.73889859010869	4.62908481171666	4.81335195446674	4.72409675170844	4.69561357810314	0.408332856165501	0.339163288342799	0.729057813336113
Merged-chr15-64075894-4	chr15	64075321	64076321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15373.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.58818304858228	6.58025064508584	6.60737099455266	6.5122402546606	6.80148092435631	6.47250714044488	0.0384208279375682	0.886388465593906	0.973794308941933
Merged-chr15-68060445-2	chr15	68059948	68060948	+	685.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	198408.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.39421433844058	7.32456255916318	6.98860089805421	7.27031216266523	7.53541619703444	6.89734920591213	0.0271124797494026	0.92410796793933	0.982900348453983
Merged-chr16-36704139-3	chr16	36703691	36704691	+	788.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10213.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	2.61409281794786	2.74430310706883	2.73353124141006	2.69708626222559	2.52899148746129	2.4848140719888	-0.695900450915683	0.370331847418774	1
Merged-chr10-37259262-4	chr10	37258752	37259752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120326.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.88506723476413	5.96714311552904	6.11803755360529	5.94733871960474	5.66964861897557	6.15773409334407	-0.107080006021709	0.736430729357475	0.93314645298821
Merged-chr8-39640789-1	chr8	39640289	39641289	+	602.0	f0_balb.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	1889.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.8215869902356	7.10803770859013	6.76340739407626	7.34877662942264	7.42292349751311	6.75613387577794	0.464831927414952	0.11389182800249	0.450859089500984
Merged-chr11-118487574-2	chr11	118487074	118488074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153103, exon 14 of 14)	non-coding (NR_153103, exon 14 of 14)	10742.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	3.88839793132513	3.85686969493885	4.31558624503877	3.41890089661587	3.70029327289803	3.81497683595494	-1.20164273945592	0.0377428052378438	0.240206569524218
Merged-chr12-84009870-2	chr12	84009370	84010370	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012006, exon 1 of 3)	exon (NM_012006, exon 1 of 3)	368.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	6.9810293591447	6.78350890264294	6.55857263876049	6.19874689524615	6.06881980052771	5.99532901217807	-1.13886309088379	6.21686955665274e-05	0.00190181353702192
Merged-chr7-121281043-4	chr7	121280555	121281555	+	955.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111241.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.5360457365985	5.48622754954972	5.77447608162494	5.17389755654756	5.21923017832334	5.58703589140497	-0.519908820472932	0.140539551407676	0.500857246596277
Merged-chr17-34645862-2	chr17	34645362	34646362	+	694.222229	f1_balb.idr|f1_c57bl6.idr	exon (NM_019873, exon 2 of 2)	exon (NM_019873, exon 2 of 2)	979.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	3.96330165961805	3.88955295513468	4.29512715874066	3.97045373482678	3.92460238016867	4.10361430836102	-0.159526176794684	0.753341175670993	0.938549578325581
Merged-chr2-145122315-1	chr2	145121815	145122815	+	745.0	f0_balb.idr	Intergenic	IAPEz-int|LTR|ERVK	-45460.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	2.82854507105283	2.82079615280237	2.76498917324868	2.43070541739132	2.38092867139062	2.38029934671915	-2.72501137440647	0.00245112243105707	1
Merged-chr18-61176682-4	chr18	61176205	61177205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178277, exon 1 of 20)	5' UTR (NM_178277, exon 1 of 20)	344.0	NM_178277	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	7.51542841065223	7.68802882217859	7.35072793893463	7.61449057115707	7.33227281297443	7.39683130661228	-0.115350898452767	0.635165107409634	0.896439353901449
Merged-chr19-44555455-4	chr19	44554962	44555962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347447)	promoter-TSS (NM_001347447)	-20.0	NM_026061	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	5.80400961467235	6.19740549507597	6.23010991861218	5.93885828529093	6.09051138613602	6.45285016318887	0.141296682539527	0.663923170685174	0.907439161928906
Merged-chr14-118180414-4	chr14	118179904	118180904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43277.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	6.04939987645548	6.20424896744445	5.75395890730439	5.54804781781181	5.78303825703216	5.86689909396191	-0.519314911223901	0.109250969191853	0.441676246779623
Merged-chr12-91778199-2	chr12	91777699	91778699	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	8237.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	5.15029982390157	4.97146198038316	5.08089892971496	5.20985747535096	5.06205375303569	5.11114178583701	0.123600317258722	0.733234682885625	0.932039456283818
Merged-chr2-166018950-4	chr2	166018431	166019431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	26294.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.52307606692883	5.54176328026733	5.46609097874192	5.65348061892809	5.37640741004929	5.52904767324116	0.0119203233571522	0.971175910060852	0.993727127580947
Merged-chr15-97945444-4	chr15	97944940	97945940	+	805.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18789.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	4.91626738151677	4.55449836895975	5.00403538276643	5.13700259690412	4.70534417533972	4.77675757523675	0.121922063702724	0.774600938307659	0.944485094095756
Merged-chr2-125775143-4	chr2	125774643	125775643	+	876.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 2 of 17)	intron (NM_177608, intron 2 of 17)	7727.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	4.12377960227061	4.37163529457169	4.49387636723379	3.90037092133376	4.10800215126797	4.22885584578763	-0.692366128231819	0.157138150489019	0.528099014514685
Merged-chr5-21132129-4	chr5	21131646	21132646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44133.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.92535786220833	7.6525245779502	7.33654192362616	7.59258114299552	7.76555935659357	7.16844244609162	-0.181806033254576	0.524123229324324	0.848572432574534
Merged-chr7-114892841-4	chr7	114892335	114893335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55815.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.48661845369402	4.82744192323265	5.29705686624846	4.87678558568805	4.92301026059261	5.21560077800432	0.228306829472295	0.608693100970038	0.885006356798728
Merged-chr3-152340197-4	chr3	152339698	152340698	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162375, intron 1 of 13)	CpG	209.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	5.4007849997515	4.79268934633535	4.64219938811556	4.8308308983027	4.65502862311896	4.53021139259581	-0.70969698419646	0.120242511644747	0.463703920541859
Merged-chr19-44930221-4	chr19	44929732	44930732	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-887.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	6.99776619754802	7.17880507327856	6.66515075428777	7.01014211081844	7.3308056605256	6.8080325693294	0.158548966298075	0.584337580398133	0.874561879083458
Merged-chr5-31468010-4	chr5	31467503	31468503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360001, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	15567.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	6.35638187464904	6.62458062131197	6.49268719511373	6.46169030690322	6.63336283514979	6.55199587649767	0.0905432195355782	0.736693125695759	0.933237342471419
Merged-chr3-51197317-4	chr3	51196803	51197803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27144.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.84868244933454	6.88831904665242	6.52954908733842	6.55171186458011	6.38703347122523	6.46020809877651	-0.491289531934006	0.0691916986685116	0.344151046853339
Merged-chr2-160214768-4	chr2	160214270	160215270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	112724.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	7.09235522810469	6.85226597026563	6.93350677207754	7.04859759437213	7.03966364784161	6.86097388887775	0.0408071821399963	0.869981046035804	0.969963985546251
Merged-chr4-103358426-3	chr4	103357917	103358917	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-24083.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	4.10926219544163	4.64196952827962	4.0473974662697	4.25499146070959	4.02656353775814	4.4818727468765	-0.115845988804383	0.824668721850601	0.958596193929081
Merged-chr2-105016974-4	chr2	105016367	105017367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145380, intron 1 of 10)	CpG	160.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	7.09381192028058	7.32828802591666	7.19981926066774	6.96107329208308	6.8461547658792	6.8753313813772	-0.482855251759001	0.0470670691061062	0.274688820385368
Merged-chr12-8924512-4	chr12	8924019	8925019	+	964.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3212.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	6.47897272486262	6.27531574261296	6.43163470229678	6.79897115677528	6.88281352431927	6.6989284489897	0.645133556302811	0.0137642815881655	0.125347306817126
Merged-chr1-85598315-1	chr1	85597815	85598815	+	643.666687	f1_balb.idr	intron (NM_030194, intron 1 of 11)	intron (NM_030194, intron 1 of 11)	495.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	4.98453264331826	4.98184571881047	4.86107805536322	4.4396788436933	4.41640973313682	4.65790074872542	-1.05751071174214	0.00927389375800291	0.0955263867065989
Merged-chr4-145222190-4	chr4	145221686	145222686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	24684.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.27733746128635	6.25109463058626	6.10128005200141	6.25315737772304	6.21340688320809	6.11736056304706	-0.0318121262635751	0.909423198000084	0.979474810815732
Merged-chr13-23572499-4	chr13	23571990	23572990	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178196)	TTS (NM_178196)	1090.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	7.08683713939949	7.14370563033326	6.86735179555227	7.30960222787042	7.73681847241262	7.48220775105848	0.715842279254011	0.00531895723836092	0.063836693190471
Merged-chr5-3503308-2	chr5	3502808	3503808	+	901.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-40525.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	7.31190630225351	6.97050899816873	6.91817554084036	7.1097998961251	7.17628771662331	7.00482330323567	0.02661079491949	0.917736017342744	0.981718564389729
Merged-chr8-126695640-4	chr8	126695153	126696153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102217.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.03332319416952	3.79904282787424	3.83236769449008	4.14225943033807	4.00599456560501	3.90330536148445	0.386531625703871	0.448481153061043	0.80725470300829
Merged-chr14-34314235-2	chr14	34313735	34314735	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	B3|SINE|B2	3508.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	3.94545112046581	4.07752368707882	4.14443258607116	4.16124012150337	4.01855993650178	4.34024595048499	0.334949388153976	0.491289942673045	0.830448151501811
Merged-chr5-139324979-4	chr5	139324483	139325483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	481.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	7.32400299377506	7.22874748866531	7.55959729744167	7.26464791232147	7.15407167098652	7.15814940642965	-0.264747571145832	0.272768077462241	0.669951714189667
Merged-chr8-125066609-2	chr8	125066110	125067110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	12415.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.99146183692197	5.96883789126539	6.15846412825538	6.20839149526099	6.01051668159806	6.21856913011626	0.183766859978274	0.527360686866327	0.849922098680457
Merged-chr13-113920158-3	chr13	113919650	113920650	+	938.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	125642.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	3.13233859124232	3.63155855406419	3.81988097350792	3.43612929102861	3.60755543561314	3.93313927581433	0.38604156562011	0.560569928591408	0.865261302076164
Merged-chr4-63572808-2	chr4	63572308	63573308	+	741.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 6 of 9)	intron (NM_144905, intron 6 of 9)	12581.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	3.18533158225641	3.01052046127857	3.11702158570871	3.0783027029974	3.06253016003111	3.56040391842676	0.588331544424088	0.385685941104077	0.766654462192739
Merged-chr10-37155354-2	chr10	37154854	37155854	+	568.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16428.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.36997680748118	3.52738057198364	3.70799411507768	3.3791357867228	3.35306182809964	3.72837286739425	-0.170810483462759	0.776827168678154	0.944892922631445
Merged-chr9-96196272-4	chr9	96195774	96196774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001184708)	promoter-TSS (NM_001184708)	-1.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	5.37330280723344	5.54447528265229	5.48372910186503	5.45263104882843	5.18573134686783	5.27165150709623	-0.320498158582646	0.349886046567808	0.737937122671328
Merged-chr6-117917052-4	chr6	117916570	117917570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166427)	promoter-TSS (NM_001166427)	-224.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	8.754236886192	8.99509098432698	8.61061969007311	8.55421354520699	8.71999603566722	8.35137526497298	-0.337148556126126	0.141880220245427	0.502856811610576
Merged-chr12-73686457-2	chr12	73685957	73686957	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	101661.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.71757867273728	6.50547261756543	6.44761183811588	6.49218851269839	6.52614320727057	6.0342988538755	-0.29526958313117	0.319816324837026	0.713726076358837
Merged-chr12-3778401-3	chr12	3777918	3778918	+	748.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-28562.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.9011754613068	4.26925669621934	3.99999797362902	3.94936503808448	4.17461593169408	3.96901692183909	-0.0864198546274657	0.865511958606641	0.968641478520565
Merged-chr16-75850570-1	chr16	75850070	75851070	+	637.0	f0_balb.idr	Intergenic	Intergenic	58696.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	3.19278211970998	3.14111981010538	3.41442575325508	3.49669578589192	3.180587426755	3.14206562461854	0.142879775163968	0.824982018746963	0.95862923400744
Merged-chr7-101650780-2	chr7	101650228	101651228	+	566.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13040.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	2.39589970164462	2.10560708691253	2.34174855273274	2.12775194626495	2.10241236432748	2.01122492098379	-1.50501358698442	0.115341494142695	1
Merged-chr2-133495648-4	chr2	133495151	133496151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56508.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.54344393924424	6.40765110101697	6.64458641589891	6.33008065601735	6.64093317092991	6.3705516314278	-0.106134740723138	0.703250045578289	0.922108924938678
Merged-chr10-60933950-1	chr10	60933450	60934450	+	634.0	f0_balb.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4182.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	6.18039492459165	6.21151995858289	6.08372204719241	6.48276158377596	6.07119851931646	6.25166694389206	0.188331361064704	0.521933946450468	0.84736361149322
Merged-chr17-34959368-4	chr17	34958840	34959840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-102.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	7.13494266673021	6.99489498856135	6.81031172981209	6.94409248586851	7.08870028163427	6.74106185934604	-0.0788089316841864	0.763681089165415	0.941793063578371
Merged-chr1-37560600-2	chr1	37560100	37561100	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19584.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	4.45125733516831	4.57996629382056	4.72888097123575	4.90103216789804	4.70358537035044	4.75634908189672	0.481723529848237	0.240300986105575	0.637370962094694
Merged-chr7-43658829-2	chr7	43658329	43659329	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 3 of 6)	intron (NM_031181, intron 3 of 6)	1332.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	5.26985378932399	5.62855877312789	5.6208096726577	6.04545961291799	5.80481459385076	6.22620784812653	0.927659394680917	0.00593305567841216	0.0692297990308959
Merged-chr11-115202531-4	chr11	115202046	115203046	+	777.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 6 of 9)	intron (NM_001033393, intron 6 of 9)	15059.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	2.90016911874755	2.7034217685052	2.84111275108639	2.66224460473158	2.59542590838859	2.85405145265701	-0.606497138097531	0.415211915436427	0.786190894237809
Merged-chr11-59227554-1	chr11	59227054	59228054	+	1000.0	f1_balb.idr	intron (NM_007476, intron 1 of 4)	CpG	608.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	9.22141225588665	9.51987209574449	8.98573911149329	9.10432904249296	9.52341780280507	9.06020067851638	-0.0188634571210989	0.939784739590885	0.986733064289498
Merged-chr4-155489433-4	chr4	155488951	155489951	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1910.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	6.00829028826227	6.55178862450779	6.79386822329351	6.30595840534253	6.64440523405291	6.67591216473694	0.106897596428738	0.745595526017678	0.936245259200619
Merged-chr19-8928840-2	chr19	8928340	8929340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144872)	promoter-TSS (NM_144872)	516.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	3.40448609874015	3.18013426829837	3.4054730106711	3.23581663744199	3.19500255488478	3.47565376735446	-0.121766330739958	0.845167536322355	0.963760118842549
Merged-chr14-64187551-4	chr14	64187050	64188050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	83227.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	3.74715406235056	4.17098366777673	3.69504901001873	3.63417557207787	3.319730991812	3.6013591842344	-1.28110595072382	0.0314943130124299	0.214995389050641
Merged-chr5-30667646-2	chr5	30667146	30668146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007681, intron 1 of 4)	ID4|SINE|ID	760.0	NR_126074	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	5.29870188506146	5.35494173913913	5.31360941926099	5.25787240005392	5.31535384325992	4.83386853185243	-0.311171542080639	0.404723617138517	0.779791650050306
Merged-chr8-116268882-4	chr8	116268395	116269395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-236120.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	4.36225053904186	4.36921595259946	4.7090414463846	4.81538291557791	4.93481366559261	4.73651310931725	0.858984214627207	0.0411847816341966	0.253356743325316
Merged-chr14-63102403-3	chr14	63101951	63102951	+	754.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-20011.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.54721591790996	6.67769634499375	6.73597747286817	6.762919484596	6.90891423978949	6.68342527617656	0.226070675512246	0.380137100567029	0.762308048682461
Merged-chr10-116513464-4	chr10	116513001	116514001	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	14448.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	4.35881598084453	4.25190387964464	4.14328264809819	4.14039350747454	4.02115338997909	4.16463637093271	-0.432413742145387	0.357758929478227	0.744304114051348
Merged-chr8-25067507-4	chr8	25067017	25068017	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-28555.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	4.66327713351719	4.70107158962815	4.67350522999252	4.29447735009343	4.13186130358411	4.41351054701888	-1.03764777499558	0.0174260380066556	0.147364141319926
Merged-chr6-54078426-4	chr6	54077943	54078943	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	38511.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.29080289183958	3.37220490879257	3.29824148377901	3.45440947458546	3.46896039163231	3.48251067029754	0.560592106729461	0.341029126849575	0.730659982236591
Merged-chr17-10315074-1	chr17	10314574	10315574	+	658.0	f0_balb.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4287.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	5.56829767386788	5.5659864607656	5.42260970679907	5.49376082095451	5.14648536484933	5.39472930416087	-0.349637917787281	0.309282314290485	0.704888186679521
Merged-chr7-100533686-6	chr7	100533219	100534219	+	786.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3381.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	6.60931242691237	6.83123286659196	6.61145560777947	6.66415482724562	6.9800283568244	6.9296488028567	0.272671379000072	0.304829695990638	0.701135264926719
Merged-chr19-59343215-2	chr19	59342715	59343715	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	2565.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	3.34188562935302	3.50580802912998	3.45772107935793	3.40886460921798	3.16771616979395	3.41957080285051	-0.412539831399735	0.497461354859913	0.833640755144374
Merged-chr8-13965107-3	chr8	13964588	13965588	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	9689.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	2.85700164994754	2.7167374543857	3.00422535116146	2.75680568268654	2.66761644934775	2.90345590829812	-0.43676443628981	0.549602309029949	0.860377701498819
Merged-chr10-41449939-2	chr10	41449439	41450439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	-419.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	6.0943081464554	6.04385275063219	6.11399366865516	6.06001235797224	6.23541673274743	5.96971518932139	0.0356384544599635	0.902095642440025	0.977397387787646
Merged-chr2-118573501-1	chr2	118573001	118574001	+	668.333313	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-23815.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.18624141522679	2.3159615075614	2.39738895346983	2.32569155767417	2.09181867588856	2.1411782469448	-0.775015609392203	0.385827104343282	1
Merged-chr17-64615084-2	chr17	64614584	64615584	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13435.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.80825702669807	4.67722440571645	4.99453845684929	4.79499880315838	4.74099582351761	4.9913513221397	0.033249533141951	0.933657043937303	0.985581479569838
Merged-chr6-145149240-4	chr6	145148740	145149740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361633, intron 4 of 16)	intron (NM_001361633, intron 4 of 16)	3765.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.84709333378989	4.14989416871598	3.87905086688496	3.59481684651751	3.7497725095342	3.62958731849538	-0.986428361019895	0.0707557225137085	0.348802782091395
Merged-chr1-135740442-4	chr1	135739947	135740947	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	(CAAAC)n|Simple_repeat|Simple_repeat	11280.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.25683461081405	3.96985234102121	4.29470061089488	5.1856542227221	5.57402141628739	5.14015002907009	2.74917526630247	8.53710909356191e-10	9.49673493926603e-08
Merged-chr11-83065034-4	chr11	83064542	83065542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-70.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	8.14129226351561	7.88991665317324	7.80122538475576	8.20421054696279	8.13945134630147	7.96372897660399	0.216084614893878	0.344107407091104	0.732901824706566
Merged-chr13-34007436-4	chr13	34006916	34007916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4542.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	6.61569071618052	6.8833444555244	6.83746529260118	6.96197615432348	6.93394183581892	6.5143648692457	0.0726894482907039	0.792603864282132	0.95000118606764
Merged-chr11-88998484-4	chr11	88998019	88999019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	-884.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.62706658085893	6.40911162762117	6.46682539019191	6.64706988194617	6.7985696322743	6.57970154629147	0.286445178486325	0.280874377849618	0.678974905787485
Merged-chr8-105827726-1	chr8	105827226	105828226	+	1000.0	f0_c57.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-18.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	5.45392048247799	5.25109078447881	5.17542524368714	5.47414904286097	5.47496927770197	5.52160820493328	0.355636984862638	0.295885730575131	0.692709629999205
Merged-chr5-124531065-7	chr5	124530509	124531509	+	970.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021430, exon 1 of 7)	5' UTR (NM_021430, exon 1 of 7)	382.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	7.27847260417525	7.14564792283049	7.22298769446664	7.3896315425162	7.26783268468466	6.77722682176434	-0.0518236263485635	0.848034797463575	0.964318271116593
Merged-chr8-125756133-2	chr8	125755633	125756633	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	21930.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	4.76809730424936	4.92953178257497	5.00875277264442	4.63570461484521	4.32759810039241	4.50661181949832	-0.975197493747122	0.020032520937506	0.161549331475867
Merged-chr2-23069222-6	chr2	23068719	23069719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001102438, exon 1 of 13)	5' UTR (NM_001102438, exon 1 of 13)	147.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	7.43681991220283	7.5429602007112	7.54672405397882	7.38299272747631	7.57613233537342	7.62231995639822	0.0315519663751502	0.889810015592788	0.974313026039223
Merged-chr3-105880466-3	chr3	105879967	105880967	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9609.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	5.81128512466458	5.66767131469646	6.02470346394411	6.078839062171	5.88954186768475	6.1482383746137	0.358036993489713	0.248218263199967	0.645389202060585
Merged-chr12-85943543-2	chr12	85943043	85944043	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118593.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	6.11831644530239	6.28904620693547	6.28614957015139	5.82066691051919	6.05064230840952	5.63714725748161	-0.633671692392126	0.0409345997779451	0.252358759600152
Merged-chr11-5734570-4	chr11	5734058	5735058	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6618.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	4.9180871234664	5.01538710122609	5.04458616995376	5.90322121517132	5.91564330536658	5.3900873822941	1.52330378458697	2.43503075029729e-05	0.00086365745383946
Merged-chr18-67253094-2	chr18	67252594	67253594	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	-7264.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	3.05062329439012	3.27560371055628	3.22579799150222	3.07010941845463	2.91914601383515	3.40389017584646	-0.203221254634163	0.76570896546059	0.94223032859205
Merged-chr12-3418072-2	chr12	3417572	3418572	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	8675.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	3.23049995549674	3.36737526807309	3.38125448083265	3.53671793851083	3.60623558171972	3.90656217622318	1.32460176510252	0.0266914213705276	0.194383863963785
Merged-chr6-82765872-2	chr6	82765372	82766372	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	RSINE1|SINE|B4	8582.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.53454736107907	4.46840365263748	4.69671227009242	5.0044015400339	5.02641150622662	5.70341196462727	1.55883633942136	0.000350022011501664	0.00791000313227335
Merged-chr17-35911619-3	chr17	35911134	35912134	+	648.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361453, intron 4 of 5)	intron (NM_001361453, intron 4 of 5)	-1559.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	3.40118449015704	3.06767392976353	3.29208119110923	3.13594857094204	3.1901703637353	3.36305273116183	-0.12863233577341	0.841398302410566	0.962920625895421
Merged-chr4-53118337-2	chr4	53117837	53118837	+	728.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	41558.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.14981066133872	5.63783690199482	5.84376856137845	6.18427280837432	5.93137293275491	6.27721242898299	0.403589852542632	0.217727201842274	0.611656200779633
Merged-chr3-142570863-3	chr3	142570351	142571351	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 10 of 11)	intron (NM_001355403, intron 10 of 11)	10495.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	3.40099516220975	3.44726112299106	3.57218607477807	3.39043878580601	3.49922573358246	3.48340584766858	-0.0425968767870244	0.941313262207642	0.986947626233663
Merged-chr1-144203107-4	chr1	144202611	144203611	+	956.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25739.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	3.68858543418776	3.47968580828088	3.55609602484604	3.28670764984327	3.18053829378554	3.46603163783478	-1.04479518564312	0.0848699369016123	0.385758802798497
Merged-chr7-123312064-4	chr7	123311569	123312569	+	845.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 8 of 19)	intron (NM_001316713, intron 8 of 19)	57846.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.35950188545935	3.0518918280652	3.38142420516206	3.07380756089147	3.21989554753	3.23213903808128	-0.381469654585692	0.557272777236211	0.864152392856197
Merged-chr9-100499110-3	chr9	100498610	100499610	+	810.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	L1M4|LINE|L1	7746.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	4.8229331691078	4.83248480051993	4.84809400184472	4.29232139922556	4.30862772614726	4.43900027081937	-1.20958557112225	0.00391122703485514	0.0510742905078824
Merged-chr2-160136993-4	chr2	160136495	160137495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120342.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.27838733722828	4.38411439229024	4.44910785624384	4.12001884299229	4.07547001003524	4.5539980399694	-0.305251338823732	0.52250247751625	0.847644119032093
Merged-chr10-51435871-4	chr10	51435351	51436351	+	941.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44761.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.08229355319455	4.05785745051907	4.8029222881025	4.02879922268404	4.45246233189598	4.69865811282267	0.157011723483508	0.77572492559113	0.9447881648961
Merged-chr6-39781526-4	chr6	39781018	39782018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	8.01209023313544	8.25378080210349	8.05295223156025	8.11552753989014	8.33370102075031	7.88465912459611	0.0273585527214203	0.907746521125792	0.979037236663477
Merged-chr10-21809708-4	chr10	21809161	21810161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72523.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.82453145352639	3.45705089104171	3.49025614046913	4.04933009255607	3.99848644652957	4.04285089809631	1.35368835245046	0.0158879407371718	0.13834279749462
Merged-chr8-104234354-2	chr8	104233854	104234854	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	14204.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	3.02892278652801	2.85439492845945	3.41974707031524	3.00469730742671	2.77053175699205	2.67938677952726	-1.36851231365766	0.0795930817729672	0.373114430882538
Merged-chr13-52079919-3	chr13	52079433	52080433	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16808.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.50945108954979	4.59760446437612	4.48613370289033	4.2314857436158	4.32579839788869	4.42576195525358	-0.534442994840425	0.219889577239277	0.61423936831415
Merged-chr16-21637537-4	chr16	21636990	21637990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	RMER1B|Other|Other	57175.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	8.10789229202974	8.18945053292868	8.07299931437697	8.08376037641651	8.40883512060911	7.90774329095796	0.0475847215874859	0.840608586461459	0.962819298477451
Merged-chr8-46620613-2	chr8	46620113	46621113	+	788.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	3322.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	3.97383838102806	3.76547326448545	3.74814651784606	4.55052379223685	4.47975385587937	4.50279403720168	1.90532283759992	0.00012581606873216	0.00344258580962368
Merged-chr15-5447059-4	chr15	5446549	5447549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49269.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.99064363735285	6.80138316200142	6.36203575912389	6.90180859481799	6.78298983823011	6.44297654796267	-0.038656309280813	0.899071364953235	0.976456276294408
Merged-chr9-89705055-4	chr9	89704577	89705577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025360)	promoter-TSS (NM_025360)	-34.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	5.41603623854019	5.47122379830085	5.37277911628458	5.31307246886108	5.31679612801578	5.13993319355594	-0.310125395717796	0.363099116105242	0.748655745189935
Merged-chr5-64092954-4	chr5	64092434	64093434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356964)	promoter-TSS (NM_001356964)	-5.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	5.85211730399859	5.87183240862295	5.7194333692143	5.84040150050776	5.68237566392527	6.1496128983425	0.126049546136617	0.694561362786465	0.919210273513843
Merged-chr16-77084287-4	chr16	77083793	77084793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70224.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.7595234913929	5.76598476179109	5.81746403096163	5.81028970596848	6.23354869223682	5.97568892447744	0.438486837464363	0.160307410221723	0.532965919658045
Merged-chr5-122402612-2	chr5	122402112	122403112	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 3 of 6)	intron (NM_019824, intron 3 of 6)	10734.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	2.40803127856589	2.58336127810866	2.59048467450962	2.46812716102588	2.33604103496916	2.40872752583098	-0.778477060933636	0.338471952021705	1
Merged-chr9-123854752-2	chr9	123854252	123855252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-2853.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	2.85629849260403	3.00537429380263	2.94928869130906	3.02353438919508	2.99381687111179	3.40968644066458	0.943133423602718	0.174785845449527	0.554295093299313
Merged-chr10-128566180-4	chr10	128565685	128566685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011119)	promoter-TSS (NM_011119)	-251.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	6.77423020200117	6.92405804941741	6.96476605294914	6.73952224180342	6.90607004858203	6.73091200050335	-0.134035622022496	0.59533443467692	0.879471010823782
Merged-chr16-49856422-2	chr16	49855922	49856922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	768.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.4120028883689	8.49699563019238	8.32663125072818	8.53881580486727	8.75536324522398	8.3201767270073	0.195834765379384	0.38177703043661	0.763352232333761
Merged-chr10-51492833-3	chr10	51492342	51493342	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 4 of 8)	intron (NM_001291894, intron 4 of 8)	1944.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	6.00950008763636	6.47591502285848	6.1275427625447	6.0922756829568	6.4891266180137	5.79081712501493	-0.0883988511167654	0.797820727612953	0.95181421173875
Merged-chr3-123266746-1	chr3	123266246	123267246	+	801.5	f1_balb.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-750.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	6.96862624662549	7.1826160376611	6.68485860343784	6.7164127608761	6.77809750207507	6.65947152471184	-0.386781567388226	0.151592019407429	0.519079091424247
Merged-chr3-135851796-4	chr3	135851299	135852299	+	888.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026228, intron 3 of 8)	Tigger20a|DNA|TcMar-Tigger	-11530.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	3.20621202391663	3.14481112066312	3.03275771755798	2.75599440693152	2.88702520901543	2.92407765443685	-1.35660420739002	0.0548476961368997	0.300881269788973
Merged-chr12-3824347-2	chr12	3823847	3824847	+	826.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	L2a|LINE|L2	17187.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.14183679243166	6.33247256963472	5.97147719674472	6.7263726152684	6.75973789922645	6.00679868272319	0.64841822500503	0.054354811437752	0.299381422526807
Merged-chr10-13868945-4	chr10	13868457	13869457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	0.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	7.48097051388271	7.50531914641656	6.80525878156451	7.49663171638473	7.32015452308475	6.79707254009239	-0.0986880368565154	0.758466409515671	0.940151248405731
Merged-chr6-87807302-6	chr6	87806838	87807838	+	898.677795	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	2419.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	6.76284510348942	6.54968851160747	6.39577897986845	6.66918447197109	6.71068203538271	6.79653369392657	0.216383332099268	0.418676991081012	0.788726823651631
Merged-chr18-61083248-4	chr18	61082756	61083756	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146268, exon 23 of 23)	exon (NM_001146268, exon 23 of 23)	-22316.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.77423908374542	3.56652231216376	3.81841389078847	4.19270247067975	4.04772251750227	4.22048653018931	1.33977677617981	0.00968989026185267	0.098350376788026
Merged-chr13-101840567-2	chr13	101840067	101841067	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72350.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.18201439295609	6.14611280354542	5.99891471287654	6.43841651783878	6.5776297447397	6.38202320934627	0.590025640624133	0.0336126938575067	0.223980542203525
Merged-chr4-122849044-2	chr4	122848555	122849555	+	626.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	B1_Mur4|SINE|Alu	12828.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	5.69039097193222	5.89220535272147	5.57844662241011	5.59230243676352	5.70390007670692	5.61280860519134	-0.174138709039628	0.587081974209171	0.875769926947203
Merged-chr4-55532962-4	chr4	55532451	55533451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-476.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.54225313071023	8.37006192959132	8.01506324766071	8.34356838320495	8.20594049372195	7.85045988986847	-0.249772241946455	0.332521534045496	0.723636403333698
Merged-chr2-22895434-4	chr2	22894928	22895928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019501)	promoter-TSS (NM_019501)	-94.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	7.51064555130175	7.72128097064178	7.37650985754959	7.67991753889376	7.83225468036673	7.61940920577042	0.242332122039127	0.304731930995723	0.701067097814987
Merged-chr11-82078234-4	chr11	82077738	82078738	+	806.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20406.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	3.43213234095631	3.10236481412226	3.05527233663727	3.18507659715598	3.19514684613702	3.52382069113355	0.374109462905468	0.57612699511859	0.871527588579722
Merged-chr8-22698215-4	chr8	22697696	22698696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8387.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	5.78939749223475	5.81577620627291	6.02774864498141	5.7543646793015	5.37725590317136	6.06706871330366	-0.228736981521582	0.513745378279418	0.842768082248167
Merged-chr5-99382950-4	chr5	99382453	99383453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-130026.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.8782961540674	7.91750733864841	7.54972265657453	7.72258409010162	8.03324549354154	7.46928263957723	-0.0364869323481921	0.889502417408637	0.974240173857916
Merged-chr17-5187670-4	chr17	5187164	5188164	+	880.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	192590.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.5299020983936	3.57982205663425	3.7983980847518	3.7468656341352	3.61470453290737	3.91436153714457	0.41438125686726	0.454291943273723	0.810152808466184
Merged-chr1-92693177-4	chr1	92692639	92693639	+	909.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44298.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	3.68649439228066	3.46919077270641	3.6808269446937	3.45218534148069	3.71036155673343	3.64714158654263	-0.00868372389307515	0.987813338012786	0.997233411338816
Merged-chr1-162589687-4	chr1	162589202	162590202	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 6 of 7)	intron (NM_001356527, intron 6 of 7)	18874.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	3.92183866894253	4.08938380315492	3.73328416209572	3.92926614636572	3.65259933937459	3.57625038431131	-0.632975833469551	0.254526066710676	0.651549145019594
Merged-chr16-17204611-2	chr16	17204111	17205111	+	685.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3119.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	4.28135609911697	4.10912803653204	4.35675142684001	4.68134290384732	4.6742402371976	4.46904569948284	0.950907938954244	0.0312309758944806	0.213987734043803
Merged-chr11-20232253-4	chr11	20231698	20232698	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	17226.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	6.11571054815035	6.34398570651436	6.55119633495404	6.04407921299994	6.41474625369904	6.54467140059426	0.0116216424829159	0.969975787479934	0.993289586174763
Merged-chr10-80146927-2	chr10	80146427	80147427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1345.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	4.1398610655537	4.10271387035971	4.34177812887235	3.91372404741184	4.3825301516124	4.04789734634172	-0.14250205387228	0.778623258144032	0.945520893795831
Merged-chr11-51921120-2	chr11	51920620	51921620	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-46511.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.97805969452586	8.12538234738742	8.06473464713914	7.85548826270154	8.09254012330746	7.95216201027115	-0.118917656254797	0.58290822033581	0.873826743013405
Merged-chr3-95862031-4	chr3	95861531	95862531	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001355759)	TTS (NM_001355759)	-6146.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	2.38247661791146	2.31534723737058	2.60712448889728	2.48203152298329	2.4878777968935	2.61947754408617	0.569488284643317	0.481803111441669	1
Merged-chr13-12461506-4	chr13	12461025	12462025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018886, exon 1 of 10)	5' UTR (NM_018886, exon 1 of 10)	213.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	8.19042538798014	8.4014797101187	8.14740618809215	8.21543054242877	8.53839953544806	8.06811243917092	0.0598684447850988	0.801497726881374	0.952995299515894
Merged-chr15-78869984-4	chr15	78869487	78870487	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7203.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	2.69028236432288	2.48827206991649	2.71316199018262	2.58644079153479	2.50634047505563	2.66380428341021	-0.274742109603168	0.721676737583279	1
Merged-chr8-68793902-4	chr8	68793391	68794391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293792)	promoter-TSS (NM_001293792)	-38.0	NM_001359129	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	5.26468605723964	5.31317589210682	5.29346484148341	5.32494325603565	5.58842797591764	5.38842956941229	0.306916939632676	0.368602784454619	0.753561349571262
Merged-chr5-135013315-3	chr5	135012818	135013818	+	968.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026688)	promoter-TSS (NR_026688)	-161.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	4.39448264725034	4.05161079306324	4.53867863262309	4.70786186133497	4.60771529536283	4.75843742518948	0.884851377658781	0.0500973941192794	0.285015098196378
Merged-chr8-83859762-3	chr8	83859266	83860266	+	824.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40332.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	2.34036271452927	2.35673907025297	2.35550283318937	2.86515316112152	2.76484888962251	2.82758358509078	3.1547460139513	0.000673616524776581	1
Merged-chr3-90446600-4	chr3	90446127	90447127	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12991.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	6.13338944933273	6.13479432631654	6.39990185592784	5.95942673529171	5.6942296520335	6.23947685024605	-0.432868869806822	0.173910135841324	0.553140727918843
Merged-chr16-27349503-4	chr16	27349010	27350010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198112, intron 4 of 4)	intron (NM_198112, intron 4 of 4)	20729.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	5.21479362353899	5.42803661112704	5.39724472958702	5.31515059674475	5.71241447644352	5.23653059107491	0.206069451590904	0.570980357475999	0.86930513576314
Merged-chr19-56655825-3	chr19	56655324	56656324	+	922.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66548.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.44350007369812	5.42477027841531	5.41924551400145	6.13964810567364	6.05186184616317	5.89818154137833	1.10550929522459	0.000366248328674861	0.00819876000333005
Merged-chr13-93771709-4	chr13	93771135	93772135	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009712)	promoter-TSS (NM_009712)	-44.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	5.68242730941991	5.73356743423355	5.81721843001617	5.09962961246578	4.92120895352917	4.95163580573301	-1.48808853322025	1.71035589925758e-05	0.000638185173387556
Merged-chr6-87750455-4	chr6	87750010	87751010	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 3 of 7)	intron (NM_001159697, intron 3 of 7)	19641.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	5.58366396003932	5.13213079557474	5.18749091163511	5.22722740983406	4.99914686567633	4.88456495865751	-0.56141870837569	0.147862102879607	0.513107343244259
Merged-chr5-135913403-4	chr5	135912892	135913892	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	MTD|LTR|ERVL-MaLR	21249.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	7.04457602550379	7.21587132210974	7.02964088934508	6.85584684894113	7.03109004045302	6.6998963347126	-0.340044866746083	0.182647723046234	0.565440922476101
Merged-chr15-96715248-4	chr15	96714733	96715733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15505.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.16004517968782	4.92105626381124	5.07562007294537	5.14311193789685	5.12464116831254	5.10585455549463	0.14866087255616	0.683106939154576	0.91523316791368
Merged-chr10-54112688-6	chr10	54112201	54113201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36779.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	4.72455151329284	4.47270645615388	4.77713513916692	4.60085548345473	4.56808036564839	4.39150318398004	-0.313589282051694	0.464447349851319	0.816413196857118
Merged-chr4-134638043-3	chr4	134637556	134638556	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	66234.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	3.3642379581868	3.41184614905207	3.58582142599027	3.47110727514629	3.16020185826531	3.50030969507863	-0.280281227751662	0.647826443077015	0.901538008768873
Merged-chr5-151394143-3	chr5	151393632	151394632	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045699, intron 3 of 3)	intron (NR_045699, intron 3 of 3)	-12372.0	NR_131166	100042166.0	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	3.49668444421535	3.58954723756651	3.57157902331291	3.44882376935798	3.75709239263025	3.744053459927	0.372804947696696	0.510979492705232	0.841249314992124
Merged-chr1-13293515-4	chr1	13293041	13294041	+	863.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	78888.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.38564528609585	4.34591838245453	4.5618305057098	4.76654783290809	5.02102799577666	4.58720021212061	0.935385800780233	0.029270184774857	0.205592058819114
Merged-chr9-64739493-2	chr9	64738993	64739993	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1737.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	3.856596205778	3.56924323221447	3.6039528586889	4.03939636597676	3.56425079366636	3.67634942862153	0.295859610016651	0.608531690697051	0.885006356798728
Merged-chr11-116096907-3	chr11	116096413	116097413	+	749.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9918.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	5.33643359796538	5.52225256676362	5.65910448833229	5.42116829519646	5.33442197504664	5.84032926227372	0.0595210206930834	0.867642803010288	0.969417251892744
Merged-chr12-21393164-2	chr12	21392680	21393680	+	813.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 4 of 4)	intron (NM_011739, intron 4 of 4)	-19548.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.89384614453415	3.93032719214033	4.16095436539614	5.25616421509464	5.59730868126363	4.91362382948836	3.31565305542665	8.77504587717211e-12	1.42887283238305e-09
Merged-chr2-180699822-2	chr2	180699322	180700322	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	2280.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	4.75723987345091	4.64278378416065	4.58031379908308	4.89126859342802	4.46090460427971	4.91550104790912	0.224337286347725	0.601006808914785	0.881855262262798
Merged-chr15-82338942-4	chr15	82338434	82339434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-108.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	7.6798748512267	7.90283829992218	7.54663835175415	7.58830532647611	7.8397183848721	7.24356511195762	-0.190248082802478	0.475055934766156	0.821727753368561
Merged-chr11-54149986-4	chr11	54149480	54150480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	49056.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.86798164257686	5.32982205341414	5.20236148536936	5.45587728685272	5.67086611417195	5.52588182743691	0.084733265199729	0.821611341725337	0.958023303204974
Merged-chr14-66183331-4	chr14	66182833	66183833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	RLTR49|LTR|ERVK	30491.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.58976940495853	6.34385990379202	6.41854630297152	6.86554032069597	7.26943158086031	6.45929323948193	0.730695033163308	0.0196487336572344	0.159521107439863
Merged-chr7-104401316-4	chr7	104400817	104401817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42671.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.51637571718593	6.44121664722079	6.92884957477813	6.61128358592372	6.92197168781742	7.03804556707921	0.361359133076234	0.214682303925808	0.60785052509663
Merged-chr11-89020090-1	chr11	89019590	89020590	+	618.0	f0_balb.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20687.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.80268957636358	5.79847064629843	6.23381376636416	6.09188086959834	5.95171516433935	6.11368141924863	0.177860890074875	0.570335056686213	0.869165556716967
Merged-chr11-107341589-4	chr11	107341101	107342101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	129119.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	7.48668878054748	7.49192343343817	7.1262061831089	7.49996054849776	7.80543066407225	7.157471467406	0.204995977866626	0.462700589030326	0.815421548245998
Merged-chr16-35906190-2	chr16	35905690	35906690	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-32280.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	5.19240447256321	5.15533246388586	5.50509872925448	5.32055126952798	5.25559952782231	5.21003131492491	-0.0342064969355667	0.92347133603535	0.982699256056545
Merged-chr16-87652671-3	chr16	87652168	87653168	+	878.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-46286.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.6957615360411	5.41348749620722	5.1236612736681	5.30191403542503	5.28941461863863	4.59008626572627	-0.648216385585199	0.142404422780037	0.503768764353502
Merged-chr16-16828871-1	chr16	16828371	16829371	+	544.0	f1_balb.idr	intron (NM_015773, intron 2 of 10)	intron (NM_015773, intron 2 of 10)	492.0	NM_015773	50525.0	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	3.01858877210111	2.62288616810681	2.56341245553925	2.69258123344171	2.57771290708282	2.9528267114532	-0.0327193318363571	0.96776819449142	0.992594535508871
Merged-chr10-121693330-5	chr10	121692806	121693806	+	591.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177335, exon 13 of 13)	3' UTR (NM_177335, exon 13 of 13)	-46624.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	3.15257586314245	3.60730742295551	3.49159040436481	3.12980915480035	3.15471698801751	3.23138695622135	-1.05655492991465	0.104173132890269	0.43049308738373
Merged-chr4-25273456-4	chr4	25272951	25273951	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026194, intron 6 of 18)	L1MC4|LINE|L1	8370.0	NM_026194	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	4.12700276322603	4.21620246231321	4.15443682919169	3.99718025052893	3.80638529609563	4.08349886858274	-0.615964634758191	0.209583186457404	0.601220360571869
Merged-chr8-41299149-2	chr8	41298649	41299649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	intron (NM_023662, intron 22 of 37)	59390.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	3.84554245369701	3.66582890843037	3.72643978418638	4.3742278213989	4.42969816197517	4.25795658006893	1.81501666929005	0.000325306570038903	0.00744652244286026
Merged-chr6-38866045-4	chr6	38865539	38866539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	10151.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.56022207079758	4.50211868896836	4.67552897341285	4.36372388509914	4.43636188739253	4.37101781749276	-0.457998824354548	0.285362471380209	0.682917350182106
Merged-chr19-21896557-4	chr19	21896088	21897088	+	843.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118248.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.01050594286181	3.9107951688495	3.81222242285229	3.88877693363038	3.71852887464121	3.77712710875901	-0.390569961137237	0.452009808890838	0.809286173636239
Merged-chr1-152025464-4	chr1	152024955	152025955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	64865.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.22204485166653	4.23779085947652	3.96623462724134	4.49955242002948	4.23419201699825	4.14143882417834	0.400276315440447	0.409037988642971	0.782473112145764
Merged-chr2-118961727-4	chr2	118961229	118962229	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35232.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	3.61329868654427	3.48992374829553	3.39854507696137	4.58948499040087	4.16040088964666	4.05553649398458	2.50121946112263	2.49614056476806e-05	0.000883073401841924
Merged-chr3-28016015-4	chr3	28015523	28016523	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	31852.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.48104212062993	4.08240826494926	4.62044609325574	4.75607171779121	4.66125649564027	4.48086832563907	0.58273400789134	0.20625057410503	0.596855755513016
Merged-chr11-5513963-2	chr11	5513463	5514463	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6678.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	2.95469855703782	3.1541825479944	3.12101024725422	3.25051833209619	2.73706995989615	2.95217322432719	-0.365443076194566	0.614986874317851	0.887675470332189
Merged-chr15-61989374-4	chr15	61988918	61989918	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010849, exon 3 of 3)	exon (NM_010849, exon 3 of 3)	4077.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	3.81615214381873	4.09421682006066	3.98561606494715	3.88914847331378	3.80239572175746	4.14550878061905	-0.0814459907510992	0.875132970681981	0.970909654971172
Merged-chr2-131239718-5	chr2	131239197	131240197	+	941.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206382, intron 3 of 7)	PB1D10|SINE|Alu	5634.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	5.19758391140787	4.87833987908899	4.97460698689675	4.79241910401459	4.89117816263766	5.10734430805615	-0.20964933896053	0.590701066937757	0.877301111216348
Merged-chr5-72168161-4	chr5	72167610	72168610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356611)	promoter-TSS (NM_001356611)	79.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	7.03972807972575	7.29719549287945	6.91831863910519	7.15671086169579	7.21803356768174	6.63410206451156	-0.0915453797210828	0.749734396951588	0.93745630986217
Merged-chr7-110179414-4	chr7	110178896	110179896	+	968.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42307.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.65579528511755	4.6364916873436	4.54455655904637	5.04502197482313	4.97486426732283	4.89577908368303	0.81408383216449	0.0380176159192036	0.241294415362708
Merged-chr4-101168179-2	chr4	101167679	101168679	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	97103.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	3.66494582976252	3.2629001742313	3.74464467792128	3.2336598630255	3.25146402047257	3.46129954234295	-0.965061074536479	0.126361767897386	0.475287495850542
Merged-chr6-116672568-4	chr6	116672053	116673053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	1283.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.34416828169324	6.60517545842006	6.98630817233629	7.31180985167816	7.03198820221139	7.18524857290377	0.244626138486545	0.409902993239136	0.783037226945994
Merged-chr7-67372296-3	chr7	67371789	67372789	+	969.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	CpG	569.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.83489339402076	7.92895408701648	7.81250270028944	8.01554201167703	7.9044934926047	8.05965147158249	0.185344610982418	0.384032541882669	0.765250850036477
Merged-chr2-156539378-1	chr2	156538878	156539878	+	756.0	f0_c57.idr	intron (NM_001006664, intron 21 of 21)	intron (NM_001006664, intron 21 of 21)	-8198.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.18612996167115	3.30054927334668	3.42789521822607	3.59672739304229	3.91321301461845	3.50061287658609	1.4446824820448	0.0178025542292017	0.149547565192071
Merged-chr4-12500760-4	chr4	12500261	12501261	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-328746.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.86133671119093	6.05455957967956	5.97825521988839	6.11836725393178	6.10908190929901	6.06208138102951	0.225840942475526	0.434825691879954	0.798660466628143
Merged-chr10-128409922-4	chr10	128409431	128410431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-81.0	NM_027257	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	5.65861129274196	5.88231930640763	5.81595780629168	5.86470635589509	6.37967957762929	6.06728988066983	0.59770475893097	0.0634740280788649	0.328250275225991
Merged-chr13-112800733-4	chr13	112800209	112801209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-68.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.79475923935636	6.61148950381435	6.62680954141925	7.00059963887976	7.20115991291241	7.16893614250496	0.683386079685466	0.00637366020684049	0.0729992454908167
Merged-chr13-98890998-4	chr13	98890486	98891486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048267)	promoter-TSS (NM_001048267)	56.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	7.29326018061429	7.40266000541008	7.09705948322664	7.25619670810126	6.81099882949202	6.92034912708551	-0.400956918984285	0.130669796384391	0.483186228268893
Merged-chr11-99186310-4	chr11	99185828	99186828	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31251.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.10214045695458	3.95684241447793	4.0107136891706	4.42131164259646	4.11678376194994	4.17787827988521	0.619843231897116	0.199875207111986	0.588507297713169
Merged-chr11-107328739-2	chr11	107328239	107329239	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-139358.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	5.356350790257	4.92204802439955	5.1653919532241	5.31607163669618	5.27635307945252	5.09177900248057	0.156395555110292	0.67600712552656	0.912421384593547
Merged-chr13-75706264-2	chr13	75705761	75706761	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1223.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	2.89971394288386	3.02684317946266	3.03604733408236	2.98957257530513	3.09556377070217	2.92708134336637	0.108271745445739	0.872862157063087	0.970324308510602
Merged-chr13-34107195-4	chr13	34106691	34107691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046184, intron 1 of 4)	L1MEf|LINE|L1	6081.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	4.88418731191744	5.13798041497536	5.21434181237725	4.86023230773151	4.9539239349558	5.24686363612028	-0.126757778970364	0.743622103854695	0.935718295640769
Merged-chr8-10006607-4	chr8	10006111	10007111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033622)	promoter-TSS (NM_033622)	-22.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	4.49944728068624	4.55701135754057	4.25419929872739	4.59738710395392	4.39569998800049	4.17398251215157	-0.113482387898033	0.806252799711165	0.954125791654011
Merged-chr4-150610962-1	chr4	150610462	150611462	+	910.0	f1_balb.idr	exon (NM_001085492, exon 13 of 23)	exon (NM_001085492, exon 13 of 23)	41212.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.46324499248385	2.49405870367737	2.52615332990533	2.52553044569149	2.4757690870227	2.72264780034288	0.470835778203455	0.547137789002128	1
Merged-chr6-146675304-4	chr6	146674825	146675825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18107.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	6.96927595118253	6.99356078217142	6.7055011376979	6.45150332852535	6.73135803798742	6.23196133661278	-0.625895048996506	0.0294411117170594	0.206353565053685
Merged-chr11-103112328-2	chr11	103111828	103112828	+	727.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025988)	TTS (NM_025988)	-3997.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	3.40141127599009	3.33690181655435	3.37411084925595	3.28931091771269	2.9799673064506	3.27748189296555	-0.77519494993412	0.226648121456353	0.62156609505752
Merged-chr3-144686134-2	chr3	144685634	144686634	+	699.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019464)	TTS (NM_019464)	34201.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	3.00024593400541	2.79988145304422	2.95110851032218	2.92062732552378	3.03063987809606	3.08213787333487	0.438534374091942	0.522081077288759	0.847437132360093
Merged-chr10-51451241-2	chr10	51450741	51451741	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29371.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.07151897352095	6.21806986152506	5.95951027097484	5.99812141934852	5.6816876710288	5.71324298524815	-0.504634710006951	0.103204891792486	0.428296315983601
Merged-chr4-128657725-2	chr4	128657225	128658225	+	747.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	3023.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.26202811466579	4.43451632444403	4.50811646778324	3.99153132242439	4.17228124433743	4.32785404711316	-0.63467033171569	0.176219830550962	0.556457992059754
Merged-chr2-150861273-4	chr2	150860780	150861780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B2_Mm2|SINE|B2	-18710.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.43805367141135	6.41279943047455	6.41813076596424	6.09211519720848	6.45900622561248	6.22270142784581	-0.240597477845343	0.395976322420733	0.773231268695054
Merged-chr10-117375997-2	chr10	117375497	117376497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	CpG	976.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	8.33351546665235	8.52454623187187	8.25720735960343	8.3401986310102	8.60004675434935	8.39214543968739	0.100680146170368	0.644704288981218	0.900287351502017
Merged-chr17-35174177-2	chr17	35173677	35174677	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	1875.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	6.93122500400622	7.02860898375071	7.07681167924423	7.02614462571033	7.6981654800878	7.54076402925251	0.664445957512676	0.0167284829342238	0.143484548808463
Merged-chr7-101554321-2	chr7	101553821	101554821	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	1481.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.035184759686	3.98800667794507	4.20136542242151	4.55891911548186	4.32603780541481	4.48604430863485	1.05120644403285	0.0233660112446892	0.179043673369336
Merged-chr16-49856868-1	chr16	49856368	49857368	+	698.0	f0_balb.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1214.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.09753528199027	8.13312567009428	7.8777327425171	8.37038544697315	8.7216553881878	7.75592308243575	0.433641315960579	0.138323940753919	0.497020805986067
Merged-chr11-83271192-4	chr11	83270719	83271719	+	851.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15507.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	7.11491339093919	7.25923371566774	6.62838590650637	7.08737320458971	6.99038364436066	6.61537909274359	-0.180128260829496	0.546345447939041	0.858677569813088
Merged-chr13-94743673-4	chr13	94743156	94744156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45287.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	6.03616110106519	6.01866068867451	5.8239115974086	6.52952054298379	6.41211025669232	5.96483854281362	0.615768015458757	0.0487931271330716	0.280511620215938
Merged-chr17-5748837-2	chr17	5748337	5749337	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-49820.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.64102104762678	3.31354556366905	3.58017004301415	3.52598088088153	3.83001953812507	3.36602639021732	0.281510839049691	0.647702328472948	0.901510214793849
Merged-chr15-81178053-1	chr15	81177553	81178553	+	849.0	f0_balb.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	12704.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.20932515402025	3.25386625684043	3.11307568681849	3.20278622699187	2.89847816699915	3.30025031673369	-0.245934103246158	0.713985066653293	0.925656547968876
Merged-chr16-24637581-4	chr16	24637021	24638021	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-84334.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.22008820029014	5.23657785519391	4.69758559601246	5.01298602395183	5.00928495888325	4.63134331875407	-0.384990935465699	0.36360374797899	0.749250635508564
Merged-chr5-17847109-4	chr5	17846599	17847599	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	2693.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.1018416645281	3.27089692340592	2.96969057857547	3.2465935336176	3.5033383057273	3.23283775661009	0.874706854161464	0.191537212584033	0.578163985386394
Merged-chr11-93736830-4	chr11	93736332	93737332	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148934.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	3.52645609747352	3.49424959973173	3.66068154708937	3.74751953295953	3.53891935402649	3.92441839988316	0.618045413667725	0.273425902624412	0.670659339634344
Merged-chr11-79125886-3	chr11	79125367	79126367	+	807.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	20606.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	2.82788745008885	2.74760182135908	2.76488055051444	2.58910196441535	2.43488914627973	2.65152701877885	-1.3069811056672	0.0942565021080378	1
Merged-chr11-5960775-4	chr11	5960275	5961275	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019661, intron 2 of 6)	intron (NM_019661, intron 2 of 6)	5017.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	4.45472823930923	4.36768113659717	4.81455353173862	4.51549810040464	4.67457064705434	4.40605896055239	-0.00786776420609049	0.985984926105668	0.997012598759537
Merged-chr8-72273370-2	chr8	72272870	72273870	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33352.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	5.04035983998071	4.66290279680867	4.67866147652876	4.110648351406	3.99335185848864	4.41511975085194	-1.6431650601791	0.000463482024691989	0.00991143981253432
Merged-chr1-75193461-2	chr1	75192961	75193961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_051999, intron 1 of 2)	intron (NR_051999, intron 1 of 2)	1301.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	4.65980000919359	4.89547409527283	4.82007382472013	4.84611257330473	4.76881243621956	5.02637890600887	0.181502343329349	0.646797160254057	0.90114476203283
Merged-chr8-120110432-4	chr8	120109905	120110905	+	972.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3747.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	7.19643791971362	7.11215124082238	7.53712048739468	7.52501132481022	7.5745422878131	7.6489005557516	0.436345844127353	0.0748653347762622	0.360171937408491
Merged-chr2-102940381-4	chr2	102939894	102940894	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-38729.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.52901609186561	3.38552208760756	3.56423313242695	3.29126502737082	3.20976040767232	3.73182817807881	-0.263125449891333	0.673979931774061	0.911765894490851
Merged-chr9-110661938-2	chr9	110661438	110662438	+	670.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	5435.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.44609844436631	4.38461081022774	4.74019689110853	5.07475269093312	4.94235082814558	5.02111301860662	1.139446782956	0.00506939127964627	0.0617499501678828
Merged-chr9-65193359-3	chr9	65192856	65193856	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21334.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	4.78518940593751	4.79692566805633	4.60695129976173	4.34113499699706	4.69535587146409	4.10096685290868	-0.763239728434018	0.11034447005887	0.44387443387278
Merged-chr11-20958485-1	chr11	20957985	20958985	+	925.5	f0_balb.idr	Intergenic	Intergenic	-127377.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.40874343561062	4.35257476421996	4.31224089156433	4.26654027817234	4.05119134607939	3.99342560180218	-0.684081400708062	0.145193098127363	0.508278212537777
Merged-chr10-40348735-4	chr10	40348232	40349232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-576.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	7.14453888862882	7.62044768333678	7.50093935465397	7.33217179968714	7.80176774748748	7.40243517040623	0.145225517538644	0.596133612538845	0.8798867145239
Merged-chr15-101980692-2	chr15	101980192	101981192	+	838.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23650.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	6.47365659484407	6.95106402278436	7.11664297996327	6.75222510245009	6.61092677044069	6.70264545961917	-0.284543784760781	0.329872233569598	0.721504110160967
Merged-chr13-23544403-4	chr13	23543894	23544894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178197)	promoter-TSS (NM_178197)	342.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	7.52492782465317	7.37641748589439	7.01058517827883	7.4339553725181	7.73864688821874	7.39504862743485	0.304119023041668	0.252497884672515	0.649921954382832
Merged-chr7-31041162-2	chr7	31040662	31041662	+	816.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106017)	promoter-TSS (NR_106017)	677.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	3.81382104037426	4.01667088069133	3.69031164882958	3.7895064549748	3.59292010191115	3.65142154082494	-0.575763455836472	0.292316449938253	0.689527063542513
Merged-chr4-139574475-4	chr4	139573974	139574974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205173)	promoter-TSS (NM_001205173)	-246.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	5.85142773016661	5.66148796195247	6.03864462706771	6.34887322519709	6.2155279556612	6.26564700832823	0.736772711983049	0.0132594030972828	0.122340753233767
Merged-chr4-155734518-4	chr4	155733989	155734989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101506)	promoter-TSS (NM_001101506)	-315.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	7.57677978631262	7.65281241434185	7.81113289108256	7.60503149959314	7.69501904813816	7.23014908468218	-0.21032354757905	0.397560919949768	0.774485045113678
Merged-chr10-60370866-2	chr10	60370366	60371366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24015.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.69207082156208	4.59649680993626	4.93882891073649	4.45051267729459	4.60555512501496	4.83109016757188	-0.258788742363116	0.542833626262087	0.857388819005253
Merged-chr14-75754168-4	chr14	75753683	75754683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 1 of 22)	CpG	310.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	7.24316504089978	7.15625474933862	7.22782897098809	7.35411415458253	7.14058244124599	7.23830861015113	0.0546610421821118	0.815775154547945	0.956487086386988
Merged-chr10-116579803-2	chr10	116579303	116580303	+	730.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	733.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	5.05904284800797	4.89201230497901	4.72847262900968	5.36146127512685	5.49500666729661	5.03880131805953	0.860298285487015	0.0268629822651477	0.195181193531122
Merged-chr9-25253461-3	chr9	25252960	25253960	+	895.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	568.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	7.0932464290371	7.32184784563824	7.18510294240012	7.21475429659835	7.21921401673844	7.39908121574161	0.105596964394598	0.658805840157155	0.905078943117483
Merged-chr9-44087935-6	chr9	44087429	44088429	+	917.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	3009.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	5.52887546687832	5.62514048299512	5.55720140322148	5.26636694429247	5.13081201391493	5.1198624802906	-0.782530786048168	0.0207506442325843	0.165416708689871
Merged-chr11-106273780-2	chr11	106273280	106274280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-808.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	5.72717768921084	5.76530501174034	5.74209640728088	5.91277972925713	5.89687946361652	6.01991030157706	0.34659640045853	0.245848081408245	0.642842283885905
Merged-chr14-27188201-2	chr14	27187701	27188701	+	857.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	Lx8|LINE|L1	44208.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.73523593707481	4.71577816220378	4.80751551989424	4.54612936006263	4.65051052734028	4.37453984059785	-0.50230904441073	0.230070991494317	0.625817164441292
Merged-chr4-53307367-4	chr4	53306868	53307868	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37136.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	4.3396783743908	4.30396473252666	4.23343171498592	4.13932809435452	3.94031882490969	4.114624674828	-0.660176187838717	0.161167851052825	0.533909498150735
Merged-chr9-7250816-4	chr9	7250338	7251338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21676.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	5.5861598988214	5.70547865297563	6.01218467619578	5.53988634554521	5.80750270573345	5.98672467174829	0.0289222183957489	0.931581963394205	0.984929477721491
Merged-chr12-16870975-4	chr12	16870454	16871454	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24024.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.34380076161363	7.16345994065645	7.27742746051747	6.67974686789383	6.69063059495245	6.61999295692449	-0.913575215503815	0.000182648451407388	0.00464907076925848
Merged-chr3-96578346-4	chr3	96577848	96578848	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001293701, exon 7 of 7)	3' UTR (NM_001293701, exon 7 of 7)	-11547.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.16602865762208	5.53636122533792	6.03011846221489	5.84603456685567	5.8523220957417	5.97955629841688	-0.0803795609477699	0.812045446199468	0.955466465219114
Merged-chr19-41338233-5	chr19	41337728	41338728	+	789.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	PB1D10|SINE|Alu	46842.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.68599005126625	7.6995461590973	7.53493298066762	7.27287303640991	7.53810367728676	7.16351048775397	-0.439855591040115	0.0694531145354501	0.344832910929395
Merged-chr8-35565299-3	chr8	35564808	35565808	+	878.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-22490.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.84687688325146	5.21823565770949	5.07727653719064	4.8207387629971	5.03560543696383	4.85343641215838	-0.309502656036381	0.429356422844027	0.795682190695026
Merged-chr5-53929672-4	chr5	53929153	53930153	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68870.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.28728806243557	5.26060287013816	5.24065311745412	5.08795850640694	4.92605819235007	5.10695633653412	-0.475485789870622	0.182501477072314	0.565355871271703
Merged-chr4-126440789-4	chr4	126440283	126441283	+	933.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153403, intron 16 of 18)	MIRb|SINE|MIR	-11241.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.70717570615937	4.72870383293244	4.64678784303832	4.63726625064229	4.72203006570614	5.03794629025711	0.237378797741362	0.562319018187568	0.86571315867742
Merged-chr4-89145586-4	chr4	89145055	89146055	+	952.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	8185.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	2.17910333288558	1.97445115518337	2.20972717958125	1.94018557770731	1.84178899100222	2.02073000161606	-1.60683195850548	0.105747939592431	1
Merged-chr11-34051530-2	chr11	34051048	34052048	+	549.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	intron (NM_010696, intron 2 of 20)	4620.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.65077972957882	5.50860730324509	6.04147980476962	5.84849099830307	5.99181445932023	5.97139562149381	0.358713468125174	0.273780373506596	0.671185802384633
Merged-chr6-72098893-3	chr6	72098360	72099360	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1252.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	6.7229042355151	7.39911402250116	6.87475819831803	7.30158215131337	7.48940911516116	6.72231602974077	0.270132554989865	0.412465778205118	0.784515731598663
Merged-chr11-100720253-3	chr11	100719667	100720667	+	747.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024456, exon 2 of 6)	5' UTR (NM_024456, exon 2 of 6)	6317.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	5.29236240349731	5.43353569804756	5.44561391378536	5.41313225656904	5.54855842592645	5.38857839775534	0.133914694759875	0.68888169861673	0.917235946766438
Merged-chr19-55098761-4	chr19	55098211	55099211	+	791.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356285, intron 3 of 22)	intron (NM_001356285, intron 3 of 22)	766.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	5.79728296848808	5.81274632280347	5.69319719811946	6.03134185125602	5.87062101041124	5.58398097778993	0.139559578548512	0.661647149045772	0.906495637422278
Merged-chr1-120529837-2	chr1	120529337	120530337	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-24813.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.70444599786241	2.91379171983487	2.82107853809935	3.02165910337097	2.87647602900203	2.95606378919272	0.657978702394908	0.35256724695844	0.740194084833795
Merged-chr12-73909226-2	chr12	73908726	73909726	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010431, intron 1 of 14)	intron (NM_010431, intron 1 of 14)	1359.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.95180339318399	4.9263274968904	4.97790803417308	5.24414758293944	4.91944206732841	4.85574609461017	0.151090505561166	0.694545652081708	0.919210273513843
Merged-chr5-146786329-2	chr5	146785947	146786947	+	849.369019	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	ID_B1|SINE|B4	8509.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.5726138740625	5.89002384016411	5.93217103421652	6.20941916722973	6.49203690306107	6.10835720941222	0.838458830664997	0.00750661305185544	0.0822396654139285
Merged-chr9-89264604-1	chr9	89264104	89265104	+	656.0	f0_balb.idr	Intergenic	L1MB2|LINE|L1	53220.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.78806151412254	4.6569516208189	4.84768072144314	4.46208392348311	4.77634013517485	4.6869103156198	-0.254204921708261	0.53917470729728	0.855784546100871
Merged-chr10-128909765-4	chr10	128909259	128910259	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007653)	promoter-TSS (NM_007653)	-107.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	5.7455486386699	6.07271297841811	5.73812984826842	4.19396900119551	4.03321179471952	4.15008993985407	-4.2702416000208	7.34188749267193e-18	3.53123569069506e-15
Merged-chr18-46523696-2	chr18	46523196	46524196	+	929.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	2275.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	6.84592043147323	7.37894150998696	6.99889708440241	7.26828542380913	7.5868763244739	7.04320401851175	0.340405065590198	0.240868472203467	0.637879816521518
Merged-chr7-97148634-3	chr7	97148122	97149122	+	885.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1MB3|LINE|L1	66871.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.55620131030492	4.31710476767452	4.39262595950875	4.41186608450421	4.23136571051943	4.58322569640784	-0.0548213748048549	0.903362837846032	0.977827650905621
Merged-chr17-45591872-3	chr17	45591378	45592378	+	812.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	515.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.22528979292592	5.32777687303975	5.51500305824259	5.23012966131488	5.40618136385729	5.34627232599522	-0.0404092005859379	0.907180024341392	0.978868492078838
Merged-chr5-67327433-4	chr5	67326934	67327934	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178651, intron 4 of 17)	intron (NM_178651, intron 4 of 17)	20479.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	6.06388979832048	5.91809211620304	6.06695445424629	6.30322711772395	6.42893106794246	6.27565873263058	0.553333667511666	0.0491010092087076	0.281571107804145
Merged-chr3-96245318-4	chr3	96244843	96245843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-114.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	8.03255800896765	8.35629680314783	7.84955180770423	8.00542932251573	8.22605977128535	7.94648863845603	-0.0483988654062972	0.843911757496317	0.963679834808661
Merged-chr9-118040374-4	chr9	118039860	118040860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048146)	promoter-TSS (NM_001048146)	-162.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	8.38420316275674	8.58559676430967	8.2611878476102	8.35205442531255	8.6063938889812	8.20529291900494	-0.0227177642180184	0.922037872953421	0.982542868764899
Merged-chr1-43466589-2	chr1	43466089	43467089	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20838.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.66628220768825	4.73973232066093	4.49833028557577	4.5102440614588	4.61692708586343	4.43226413743437	-0.282643928222517	0.504323674362554	0.837634550662405
Merged-chr4-59416633-3	chr4	59416097	59417097	+	624.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	22036.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.74056219873832	3.58084675386054	3.42436840333598	3.64375805668479	3.38992304320565	3.55284811023045	-0.234354180614102	0.688591148375336	0.9172299553909
Merged-chr15-79322874-2	chr15	79322374	79323374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	5497.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	4.62680973842852	4.18437630659948	4.31962213153373	4.59397670585447	4.14951431525819	4.7868144255312	0.337209760266908	0.496435787302794	0.833046085446241
Merged-chr11-86840711-3	chr11	86840223	86841223	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33063.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	4.12042400395009	3.80743090147943	3.78898581870517	3.84753547870019	3.74316414944127	4.05631742853837	-0.121038179623065	0.820485798613852	0.95765159673252
Merged-chr1-86599996-4	chr1	86599516	86600516	+	851.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360887, intron 5 of 6)	intron (NM_001360887, intron 5 of 6)	17095.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	4.89305775061004	5.0964968229768	4.74023446729826	4.80490143345425	5.00719456705916	4.84693621592222	-0.071525107193244	0.856527414379747	0.966529239953755
Merged-chr5-25774482-2	chr5	25773982	25774982	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310504, intron 1 of 10)	MER68B|LTR|ERVL	14509.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	3.03440303819939	3.31572134866341	3.26569258730672	3.06858189332619	3.35005879115232	3.64626096926754	0.634528796303013	0.344527929025776	0.733150745942016
Merged-chr2-124684706-4	chr2	124684210	124685210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31129.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.18328395033053	7.16225721618823	7.02443013423071	7.30569942057245	7.38837633145858	7.24734402699565	0.282220730101106	0.227249984489316	0.622375640490653
Merged-chr1-88576379-4	chr1	88575871	88576871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24854.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	6.70500154874552	6.4156355726907	6.57217715310633	6.62729145001939	6.70391655325227	6.50803321905534	0.0833523419357678	0.755758013092955	0.939419158965935
Merged-chr17-56036725-4	chr17	56036229	56037229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252471)	promoter-TSS (NM_001252471)	-70.0	NM_001357649	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	6.95248195441344	6.75088272698241	6.79737823582529	6.78290033992176	6.80356530699912	6.71532651028808	-0.1049490864674	0.675753612760529	0.912305923925221
Merged-chr16-77030615-4	chr16	77030110	77031110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	16541.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.25724191219152	5.26347478712952	5.23604836297459	5.16522701728154	5.31854615600737	5.2997271934678	0.0216903934580877	0.94987918267618	0.988327606658909
Merged-chr5-113931068-4	chr5	113930578	113931578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22372.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	3.55444196568567	3.43931852473365	3.24152535172303	3.15370887414561	3.17731757909696	3.37164060299944	-0.76681266100019	0.222662808696983	0.617620026273531
Merged-chr19-4053133-2	chr19	4052633	4053633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6314.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	2.7858101705159	2.61960902649805	2.75078286994253	2.66925933141211	2.45324344971969	2.63731734324181	-0.75454373867047	0.328816443243846	1
Merged-chr9-44196567-4	chr9	44196044	44197044	+	932.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	L1MB5|LINE|L1	37502.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.70711310671774	5.67271329926288	5.79459388326756	5.80701876031231	5.74743107163048	5.72839262570314	0.074418115374875	0.807681291126137	0.954557080558103
Merged-chr7-114190914-4	chr7	114190391	114191391	+	713.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63789.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	5.12593332065781	5.19081391197511	5.03114902485142	5.37357189045831	5.40681684819291	5.45315467453575	0.574280635466697	0.0968142780867531	0.414770871736835
Merged-chr9-64703712-4	chr9	64703209	64704209	+	837.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	MIRc|SINE|MIR	34047.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	7.05833767834404	7.20084734255565	6.79963520755893	6.89240422772733	6.99690236385814	7.0841421916789	-0.0743785378680502	0.772142852618341	0.943680976839558
Merged-chr12-78748836-4	chr12	78748341	78749341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-106.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	7.73197634923006	7.86578105113311	7.43975020236458	7.56568676686621	7.43413672022661	7.10879860916964	-0.447667137882382	0.0851335444360454	0.386252608791229
Merged-chr4-43045885-4	chr4	43045379	43046379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	341.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	7.18108506152425	7.03611310105865	6.97609741251432	7.04380975178722	7.28033864700314	6.77830549295622	-0.0109535298099603	0.96712526714213	0.992479541792373
Merged-chr12-17682609-6	chr12	17682236	17683236	+	993.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-8073.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.03320352575406	6.0318020750451	5.96211915843673	6.31771768084386	6.37322970957394	5.87219864649588	0.354339387784717	0.247357313430785	0.644265503899033
Merged-chr1-131275348-4	chr1	131274872	131275872	+	901.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 4 of 21)	intron (NM_019777, intron 4 of 21)	4191.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.93710168746934	3.736014690631	4.03423818569717	4.25034178125499	3.86307129693598	4.32244405964416	0.734082514938679	0.161040289053623	0.533698004623889
Merged-chr10-120665906-4	chr10	120665390	120666390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99842.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	4.29924496290281	4.38289996009875	4.40700358888053	4.40300973100795	4.01575386422985	4.34543410988771	-0.279721118712814	0.549983044271544	0.860509903840749
Merged-chr7-13024374-4	chr7	13023813	13024813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011588, exon 1 of 17)	5' UTR (NM_011588, exon 1 of 17)	161.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	7.10015065616914	7.12800609192696	7.23497611310392	7.04861882970857	6.56556568035328	6.88434023943925	-0.47421069437853	0.0746047945343513	0.359510376734559
Merged-chr4-141994768-1	chr4	141994268	141995268	+	814.0	f0_balb.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	11776.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	5.01438256303024	5.29030812680715	5.55259337248973	5.25889936080411	5.46604914842829	5.2988743184296	0.112586336969784	0.760764388011198	0.941002855722266
Merged-chr10-51480209-1	chr10	51479709	51480709	+	1000.0	f0_balb.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-403.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.30950320903228	6.80976424808906	6.88233025096123	6.84038358034545	6.85760983643534	6.75762066264745	-0.313331932270029	0.253130611611268	0.650518621624263
Merged-chr4-53123662-3	chr4	53123165	53124165	+	794.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	36230.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.20479079900987	5.32804055996073	5.33461287317217	5.43038550100219	5.28390433483057	5.02375044045927	-0.046023217008911	0.897869558734671	0.976179002491449
Merged-chr12-70477743-4	chr12	70477231	70478231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	LTR16E2|LTR|ERVL	24577.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.20313432329985	7.35594259296181	7.42896520444387	7.30821569921592	7.56325889896464	7.36964744064251	0.140036828094091	0.556474900164717	0.863603167403937
Merged-chr19-26697282-4	chr19	26696787	26697787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 22 of 32)	intron (NM_011416, intron 22 of 32)	-50878.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.52187893366516	4.2084560949874	4.2493744951862	4.14510837714487	3.95539253453739	3.74751022140763	-1.05192939691756	0.0406605870416657	0.251457502959084
Merged-chr10-117847481-2	chr10	117846981	117847981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1507.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.29916507375219	3.96718475543842	4.62703155202223	4.03446776551919	3.98852609720244	4.50917690230676	-0.341551973434999	0.521398330321154	0.847043003128525
Merged-chr2-91974016-2	chr2	91973516	91974516	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10453.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	2.41546991762329	2.62490794813106	2.60053826691703	2.68918005271802	2.54367836813758	2.85606410988016	0.826389312072065	0.294015632809955	1
Merged-chr19-45018717-3	chr19	45018311	45019311	+	753.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	676.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	5.16055618739961	5.05099459631573	4.77321638358551	5.19274976443729	4.78789278748591	4.75746799078056	-0.179264606078054	0.66177245211131	0.906495637422278
Merged-chr10-127676898-4	chr10	127676377	127677377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113211)	promoter-TSS (NM_001113211)	-188.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	6.43940548707315	6.67041237380758	6.44839060012088	6.86533837951291	7.06890048678552	6.59995386189516	0.537038064570028	0.053980307514728	0.298065282006442
Merged-chr5-64883668-4	chr5	64883191	64884191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49008.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	7.13103222106954	6.80925432443633	6.67707646618239	6.86955132279085	7.16121751594037	6.99384868712527	0.187992156558694	0.48922628928723	0.829513409932181
Merged-chr12-40433337-2	chr12	40432837	40433837	+	617.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	12453.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	3.89224913008982	4.02873166304528	4.46432225514458	4.37260732016164	4.24935158639514	4.28216025996083	0.446168421332907	0.370573904262704	0.754883488809214
Merged-chr6-72535350-4	chr6	72534853	72535853	+	832.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9038.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	3.0050780557094	3.28578414573826	3.290429649903	3.21957303105085	3.11340867027901	3.51836311698135	0.363267447512227	0.581429494774764	0.873298754324848
Merged-chr12-3895431-4	chr12	3894935	3895935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	3691.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.67433228382597	7.74092139062677	7.36855945250254	7.14576384325461	7.5145399605852	6.8162285652772	-0.594289300378386	0.038870301439669	0.244413212589132
Merged-chr6-129395792-2	chr6	129395292	129396292	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	4.98579400398607	4.88331357084157	4.84608228066566	5.04995480784853	5.17425390038512	5.53939788085794	0.736831525493956	0.0558407340476799	0.304282632523861
Merged-chr2-92485846-4	chr2	92485357	92486357	+	907.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25339.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	3.78876863895704	3.45900365110111	3.90816499953938	4.06186634808451	4.15788690896169	4.11929194588426	1.21254851801757	0.0242725868617186	0.183424326177483
Merged-chr3-27213827-2	chr3	27213327	27214327	+	832.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30823.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.70576417177164	4.70537501644761	4.81310854688426	4.73790863106178	4.39456872239667	4.52202123267283	-0.437080539659437	0.297878111169621	0.694689926124663
Merged-chr6-17629249-4	chr6	17628744	17629744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7766.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.50894509709095	6.76962397392892	6.83320590339638	6.80266584618148	7.14047808610644	7.07993783367658	0.480855621751926	0.0722986398828242	0.353157446871531
Merged-chr7-38019074-4	chr7	38018564	38019564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	CpG	488.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	8.31185252164046	8.77764593364541	8.40072237125215	8.42049738706847	8.14543140353962	8.18258750007901	-0.364242560930082	0.129017932701452	0.480371176632321
Merged-chr2-60037203-4	chr2	60036789	60037789	+	628.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	88451.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.3627959173719	5.57998738008463	4.74461992923396	5.18321886816298	5.24616453892167	4.62655487015442	-0.463136822881875	0.318193610849421	0.711948531905277
Merged-chr7-19699773-4	chr7	19699282	19700282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	-594.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	6.45091215452003	6.67698462659137	7.03594796059941	6.48144767171599	6.77572430295365	6.19862203899018	-0.343956468187591	0.279641592798117	0.677333692015015
Merged-chr16-55975684-2	chr16	55975184	55976184	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1067.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	6.69013688117316	7.00100960486026	6.21930547730569	6.22462994044592	6.39714466062625	6.02004152751044	-0.735803272744392	0.0249696039864345	0.186874424221059
Merged-chr12-84190844-2	chr12	84190344	84191344	+	665.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3171.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	2.21005722724342	2.10284608399078	2.4560007539235	2.48885561533054	2.34677042190973	2.65324673545322	1.58471636536565	0.0796965272097395	1
Merged-chr1-87647969-2	chr1	87647469	87648469	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	(CA)n|Simple_repeat|Simple_repeat	27657.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.90109734524337	5.78755548703943	6.22650222339517	5.7986697625172	6.03294042754715	6.39441201227104	0.198941450453128	0.552410473857375	0.861703174022806
Merged-chr18-84671978-3	chr18	84671483	84672483	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 7 of 11)	intron (NM_023149, intron 7 of 11)	10076.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	3.16959200719972	3.24701141034946	3.30255634133231	3.18116137783918	3.08088877818138	3.14657620395038	-0.444492718155444	0.481649745041905	0.825159653544888
Merged-chr7-125552242-4	chr7	125551744	125552744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-38.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	8.21455073432391	8.65753630748461	8.04435783202839	8.30575571176251	8.72726342946176	8.23452809886918	0.151029421757504	0.578174824312999	0.872387001636785
Merged-chr1-36368808-4	chr1	36368313	36369313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172652, intron 1 of 20)	CpG	368.0	NM_172652	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	7.43260219702455	7.09381203225441	6.95480152787212	7.40185573636961	7.09513649712374	6.8786234923352	-0.0518013871508803	0.854481988074449	0.965987623019113
Merged-chr4-34495195-4	chr4	34494688	34495688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55427.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	5.5062392947532	5.56441003014093	5.76788516619615	5.32896633702618	5.61570359742296	5.75599828648168	-0.0660449046233985	0.84537318907425	0.963773214686551
Merged-chr7-4083619-2	chr7	4083119	4084119	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	B3A|SINE|B2	-20415.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	4.4187987660544	4.62664484073892	4.54764887497337	4.77636100130284	4.43034334861602	4.7330680949065	0.274684193518153	0.524287881609074	0.848650426908011
Merged-chr15-76672167-2	chr15	76671667	76672667	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152559, intron 1 of 8)	intron (NR_152559, intron 1 of 8)	524.0	NM_033371	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	5.23539392965741	5.08545772302484	5.16590082418543	5.0470582712188	4.84727202098749	5.06245345054752	-0.386225887365516	0.294090295753882	0.690744745095144
Merged-chr4-63899341-4	chr4	63898849	63899849	+	863.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38065.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	3.68378768878172	3.43685655556376	3.48363466911249	3.12704870852191	3.29115221764372	3.08087643717496	-1.45347392518602	0.0261955494010151	0.192211576239829
Merged-chr11-109860771-1	chr11	109860271	109861271	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	14893.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	2.58040193775134	2.30717603291996	2.33393721082643	2.68958277227009	2.30643667210955	2.60927466636971	0.764518716336054	0.376862136426592	1
Merged-chr12-111166126-4	chr12	111165607	111166607	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	-263.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	7.18346494707925	6.88132533925137	7.07261065489442	7.24895950977213	7.06192453115908	6.71856484175118	-0.0223238096485115	0.93477878254002	0.985727536128156
Merged-chr11-116028504-4	chr11	116027968	116028968	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	7.6927630001332	7.7149465865695	7.37125693008921	7.47488874227561	8.00827063045949	7.58651819764692	0.160676090899734	0.545249522844338	0.858059274547204
Merged-chr19-41278721-3	chr19	41278219	41279219	+	934.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14715.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.56370908651535	3.39738399306697	3.49671135225847	3.41812699605059	3.52564899916616	3.61990095169947	0.124217923846941	0.828976981364397	0.959932344512127
Merged-chr16-38753688-4	chr16	38753179	38754179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 2 of 6)	intron (NR_152434, intron 2 of 6)	11420.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.50125947174392	5.70429886791139	5.95824470897097	5.83026607550464	6.15990549428413	5.61171404293866	0.314315357777369	0.364795960376686	0.750028369485675
Merged-chr8-125725162-4	chr8	125724682	125725682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9021.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.98093060107257	5.72830833517619	6.02843964906694	5.76279846458546	5.68487760297417	6.20773422861159	-0.036946222725296	0.911763279888891	0.980182089643468
Merged-chr9-25559069-2	chr9	25558569	25559569	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RLTR31B2|LTR|ERVK	77472.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.12531984424889	3.1057263306345	3.32164407090174	3.11340234274323	3.56409627140114	3.03697644358174	0.34668632537278	0.614908843218326	0.887639829057119
Merged-chr10-80741829-1	chr10	80741329	80742329	+	586.0	f0_c57.idr	intron (NM_007460, intron 1 of 30)	CpG	446.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	8.35066319388163	8.45581470289713	8.31965888480328	7.94068117132819	8.37330750437261	8.42710084609377	-0.157886507472062	0.501270503523456	0.835523069455156
Merged-chr2-154305639-3	chr2	154305152	154306152	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1592.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	6.02101358344229	5.88460307477537	6.39052112968733	5.99341420542737	6.10242539583147	5.58650059446237	-0.313177435102924	0.357176453189539	0.743779426322518
Merged-chr12-111820923-2	chr12	111820423	111821423	+	636.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026752, intron 1 of 6)	intron (NM_026752, intron 1 of 6)	6753.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	3.07890352765651	2.82689645072782	3.53012345398738	2.80873272483051	2.63686287354111	3.25325494197397	-1.08929099364197	0.179168422480761	0.560650073249563
Merged-chr6-29540498-4	chr6	29539998	29540998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347079)	TTS (NM_001347079)	11216.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	6.36286744578614	6.16037486140064	6.22363564187417	6.12368666963303	6.58295910698588	5.98996840562006	0.0378168102992306	0.904863348810152	0.978165789675139
Merged-chr9-108578713-4	chr9	108578215	108579215	+	999.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-45.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	3.98306712426052	4.45479683170457	4.44302671974235	3.88331474059403	3.97870008163503	4.34786481750364	-0.64274012340997	0.216860654631138	0.610479103814458
Merged-chr1-134494122-4	chr1	134493596	134494596	+	836.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-564.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	7.39800966437722	7.67228541749608	7.26054289256732	7.119961322103	7.79020752481668	7.28225840013168	-0.0281988957385063	0.922517013816373	0.982621045978137
Merged-chr2-158140873-2	chr2	158140373	158141373	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5519.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.05972675866693	4.19424116015801	4.4923076552936	4.3782446540735	4.01069537413065	4.73927484813011	0.382651331111049	0.459206819387925	0.81350236795577
Merged-chr2-79696155-4	chr2	79695654	79696654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11626.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	6.28902477635484	6.0871529946219	6.07738089650791	6.01714611992951	5.96555746454283	5.87732630895357	-0.344905555863197	0.237289887920263	0.633672456067794
Merged-chr7-47051965-4	chr7	47051461	47052461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	1321.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	7.64300621276608	7.46509430491305	7.55108901006421	7.84746292867638	7.89744196383064	7.30187458701689	0.238008253010287	0.361689124588417	0.747458707295016
Merged-chr14-31402839-4	chr14	31402271	31403271	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	MTD|LTR|ERVL-MaLR	14906.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.84789914748031	7.78722292116488	7.6725474901649	7.32463616604505	7.61859025315893	7.33154256308329	-0.48455600052012	0.0395034021573135	0.24692598781872
Merged-chr1-86524962-2	chr1	86524462	86525462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1595.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	6.8606360192193	6.73936625057305	6.26690902008474	6.42095086703607	6.73475369473488	6.19387736145934	-0.278933224336926	0.381314341595158	0.763080052613635
Merged-chr13-110903426-4	chr13	110902926	110903926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-73.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	5.84206350807874	6.32128095892747	5.79449084226118	6.1596615467918	6.20432608534767	6.07863049149051	0.221986786524853	0.488475063610378	0.829219705665341
Merged-chr2-80150263-4	chr2	80149758	80150758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20600.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	2.4810591211364	2.30153664068609	2.33006985527629	2.47128711167626	2.39305818174884	2.83985963133872	1.21312152608865	0.155240719191166	1
Merged-chr2-126874985-2	chr2	126874485	126875485	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164325, intron 1 of 38)	B2_Mm1a|SINE|B2	1276.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	6.09236416672703	6.64382047441618	6.27806079733782	6.21861325020884	6.17627104757641	6.23664548591418	-0.260031402649016	0.393409691397941	0.771547729581095
Merged-chr9-110409557-1	chr9	110409057	110410057	+	544.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1347.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	3.35807649877586	3.42046896340391	3.52680689200778	3.60239355457595	3.37248445246336	3.98000050501168	0.824430356917007	0.176204608928834	0.556439830724144
Merged-chr16-36725276-4	chr16	36724787	36725787	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	31309.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.59672295304431	3.26395987901939	3.53058170485019	3.58920617280425	3.28184367939906	3.60104155144603	0.0856345753679116	0.888441465610058	0.974034827576098
Merged-chr2-166686000-2	chr2	166685500	166686500	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	27832.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.14401664812312	4.1601174530058	4.4398514905435	4.43386549380651	4.50736626282554	4.46500939652264	0.59484163489086	0.185321303430999	0.569470877644115
Merged-chr4-117210555-4	chr4	117210030	117211030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27906.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.43204029293321	7.21770447272126	6.6213776439639	6.77608097874949	7.06667773024422	6.41848846281301	-0.0325908063216867	0.924174059085728	0.982917919313605
Merged-chr11-55106830-4	chr11	55106239	55107239	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 2 of 3)	intron (NM_010299, intron 2 of 3)	8754.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	5.72441307472061	5.39381342591936	5.49362253005098	5.35693938753894	5.51992126486367	5.58451859611044	-0.112096765464109	0.740656079502243	0.934629143044672
Merged-chr17-87954831-1	chr17	87954331	87955331	+	699.0	f0_balb.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-20219.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	3.10650599609164	3.05686507346493	3.50454157966935	3.41818071500982	2.87354304543603	3.47336984070465	0.185564520170345	0.796700320113818	0.951484355174064
Merged-chr5-101978274-2	chr5	101977774	101978774	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	91647.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.59453745057455	3.31444394255146	3.90842216708964	3.56142831153758	3.66400296238237	4.22721028945301	0.716717612113616	0.256435696192756	0.653552886970565
Merged-chr13-45962100-2	chr13	45961600	45962600	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	2891.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.37930096965	4.4206909422413	4.2269544472877	4.32610252563483	4.29364699539698	4.59390887272401	0.132012588155212	0.770390216139222	0.943392092118189
Merged-chr10-117806881-2	chr10	117806391	117807391	+	975.4500119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-14186.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	3.10851545943813	2.99914404238993	3.06445854634181	3.01635511743387	2.91316234743086	3.07802302954757	-0.268162266701395	0.686560347703514	0.916765308144462
Merged-chr11-117707025-4	chr11	117706520	117707520	+	967.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	MTC|LTR|ERVL-MaLR	52731.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	6.2133943758729	6.25198037918238	5.73595676276472	6.0057811342242	6.2714324621383	5.88080384281599	-0.0450500610632994	0.890606198977789	0.97453903646658
Merged-chr17-10842364-4	chr17	10841857	10842857	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	1998.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	3.58924130194817	3.89864206472201	4.06235044561317	3.87258320491351	3.9938963741554	4.17362257507184	0.477231981336076	0.37376905067721	0.757546812967132
Merged-chr2-75689050-2	chr2	75688550	75689550	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	B3|SINE|B2	15613.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.16232234125403	4.20361478729569	4.32793953176399	4.08036146191726	4.06454268742071	4.3097423937482	-0.22458713372999	0.633230992627019	0.895978434527964
Merged-chr2-119047016-7	chr2	119046488	119047488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029617)	promoter-TSS (NM_029617)	-131.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	6.48677068424311	6.26001847775704	5.97773682530224	6.91770700524582	6.94518525467537	6.60896886344857	0.906604532709881	0.0021651589006221	0.0327918714603137
Merged-chr1-143803747-4	chr1	143803228	143804228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019562, intron 10 of 10)	intron (NM_019562, intron 10 of 10)	26450.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	2.81411870653857	2.96409344242393	3.02530680502673	2.63004464551028	2.77235061363218	2.86424749324254	-0.904110006360785	0.216313542663474	0.609736247697899
Merged-chr13-56168049-3	chr13	56167545	56168545	+	850.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10840.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	2.98639971473445	2.7274777288342	2.81100808649495	3.0130143247482	2.73851697251886	2.94661212351057	0.262986656605288	0.716714674890942	0.926808110346028
Merged-chr1-171839709-4	chr1	171839198	171840198	+	875.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252472)	promoter-TSS (NM_001252472)	1.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.07686380227089	5.99908321405335	5.73277018942739	5.79530330387367	6.15011793250833	5.84762002193794	-0.00339725666680398	0.991508003808324	0.99826611332009
Merged-chr4-53229579-2	chr4	53229079	53230079	+	695.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-16617.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	3.93461523965256	3.75050611937167	3.69965890236687	3.89735807678348	3.68617818843536	3.66090303872868	-0.161380481296491	0.765129937032375	0.942123616786297
Merged-chr3-61393743-3	chr3	61393249	61394249	+	633.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29242.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.55041042207072	4.336717331083	4.41556036581361	4.28533557759763	3.85187229129161	4.11925207266831	-0.946910551664214	0.0515842254905814	0.289623497612706
Merged-chr18-78014925-4	chr18	78014470	78015470	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 32 of 43)	intron (NM_001195633, intron 32 of 43)	42298.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	4.45694781168301	5.05209604401894	4.6251336415366	5.48784943609882	5.12049462145225	4.82361148767075	0.925324034731881	0.0415757391183744	0.255041194181252
Merged-chr5-114659844-1	chr5	114659344	114660344	+	630.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1423.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	2.9605939913745	2.85097460981632	2.84475622817796	2.92298913856224	2.73971238165828	3.15129928768717	0.259414873921064	0.717554764509157	0.927113669510706
Merged-chr11-72697497-4	chr11	72697007	72698007	+	766.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009671, intron 1 of 24)	ORR1E|LTR|ERVL-MaLR	7505.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	4.94000027974256	4.36576696705546	5.09690942480169	4.35038957083933	4.75864107183601	4.63753267652419	-0.542843489906874	0.254408776587675	0.651412431982951
Merged-chr1-170867020-4	chr1	170866509	170867509	+	853.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	762.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	5.95063223241171	5.73190188389089	5.33686233954621	5.83193750730396	5.85715759618778	5.46904346198694	0.0544723597488551	0.879075401474701	0.972074795996392
Merged-chr1-54802407-2	chr1	54801907	54802907	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	123980.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.3302544131761	3.49474326513486	3.4454187203021	3.31695877802901	3.15580984020802	3.46231884825223	-0.454063540871532	0.458305564732714	0.812961658694989
Merged-chr1-150165040-4	chr1	150164549	150165549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-101.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	4.4531017657103	4.42804658340874	4.00726686635944	4.40809652977283	4.44330438097269	3.91026617583744	-0.0898947785748661	0.864224127686584	0.968269312109804
Merged-chr6-83572503-4	chr6	83571986	83572986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024239)	promoter-TSS (NM_024239)	18.0	NM_001362078	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	6.69971394528833	6.82214369793458	6.87308449869242	6.88960873649322	6.70740599334199	6.65456191766548	-0.0632452286472477	0.804490560467231	0.953651704501661
Merged-chr1-139263371-3	chr1	139262851	139263851	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	113725.0	NM_133239	170788.0	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	3.54569495864894	3.19687585642831	3.50477485947565	3.74878194255384	3.5127713714444	3.57616637655555	0.699833716788702	0.24404346565381	0.641229541844635
Merged-chr4-3629033-4	chr4	3628530	3629530	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27476.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.9004399917078	4.60525246854495	4.52261216280939	5.05001637072544	5.08106677251507	5.31545324444753	0.990087756858404	0.0147470625358949	0.131125622941519
Merged-chr14-26530533-3	chr14	26530025	26531025	+	625.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	4099.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	3.92357434324569	4.50369962510152	3.92377625390642	4.31267034949173	3.94110042173691	3.88680385791249	-0.261527337121235	0.637716313353665	0.89735407749672
Merged-chr7-30953575-4	chr7	30953088	30954088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3215.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	5.23599435020732	4.98308667986862	5.31876227681573	5.10492790172972	5.20314223548849	5.25974851707816	0.0201058974645076	0.955865294481776	0.989783387008628
Merged-chr12-84970916-4	chr12	84970390	84971390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178065)	promoter-TSS (NM_178065)	-4.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	6.73721301666594	6.79339575113991	6.8861505168956	6.86278950952059	7.17928977409839	6.61121352959493	0.179270961230716	0.518539245287594	0.845359077192438
Merged-chr7-67494764-4	chr7	67494192	67495192	+	707.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121834.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.94772824318707	2.86592619048171	3.14155805364403	2.57986539985296	2.72394413289999	2.87310622041131	-1.32416086969959	0.0794495999880984	0.372693782602869
Merged-chr14-64917275-2	chr14	64916775	64917775	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	32582.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.7991697137501	4.95293424686693	5.01190768282164	4.91660591188102	4.72715583093672	5.10870588837635	-0.0126579393838035	0.974346180774847	0.994276686350905
Merged-chr11-70680111-4	chr11	70679626	70680626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 8 of 20)	intron (NM_001190379, intron 8 of 20)	7979.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	6.01075702071777	5.82705947430623	5.9033367890214	5.87626087433094	5.91095525149923	6.29925352582007	0.201320150322565	0.519668732200787	0.845958930747247
Merged-chr3-95670721-3	chr3	95670219	95671219	+	792.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11998.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.01358856751255	4.63508892492644	5.09529436222209	5.16233898539867	4.96930850500126	5.1591319421974	0.372551325774085	0.346127148724814	0.734515828466387
Merged-chr15-86190255-2	chr15	86189755	86190755	+	773.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	5.26192440043308	5.23179118641619	5.6902066091786	4.90546339589455	5.1897135957802	5.50018267733866	-0.374502353505044	0.342095839489099	0.731149455774401
Merged-chr7-100991153-4	chr7	100990656	100991656	+	963.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20842.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	5.10264158472855	5.13714634131453	5.23082186901857	4.8975121575959	4.7100275145183	4.76935802738795	-0.788753181909157	0.0365408213261664	0.235240902197884
Merged-chr2-24949637-4	chr2	24949110	24950110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147179)	promoter-TSS (NM_147179)	-167.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	5.13777218070302	4.86797132510142	4.55655745463774	5.05526806897867	4.71469387932162	4.53329087277776	-0.210444323794725	0.637539302078786	0.89735407749672
Merged-chr3-79286271-4	chr3	79285796	79286796	+	821.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59080.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	5.66881255653486	5.97339400294487	5.266546696608	5.70748422621646	5.57083207305935	5.58774554360347	-0.112293621813121	0.754997007853117	0.939180610396804
Merged-chr10-19593635-2	chr10	19593135	19594135	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	1686.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.42159520803158	6.51510019383372	6.3880433731835	6.89770876035867	6.90014368958355	6.94923916274741	0.737038418051537	0.00354391748787223	0.0476000462196728
Merged-chr3-90446999-3	chr3	90446501	90447501	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13365.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	5.58565553205967	5.62468769533471	5.89277882500259	5.52466853996015	5.29055754412112	6.01737543354916	-0.126207493522855	0.732993400739056	0.931985446585439
Merged-chr1-39590390-4	chr1	39589891	39590891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13044.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	5.71931420677515	5.56584167208146	5.75825416204109	5.85704958274614	5.61810918084361	5.79472501335908	0.13871898238522	0.661023536189522	0.906246109292722
Merged-chr7-126750924-2	chr7	126750424	126751424	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-8702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	2.88815407425434	2.6152822488219	2.97340811216444	2.62169359849651	2.57152511230502	2.98899572780206	-0.490392233130182	0.530944053398271	0.851363932161699
Merged-chr15-76697211-2	chr15	76696711	76697711	+	579.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_182805, exon 2 of 11)	exon (NM_182805, exon 2 of 11)	485.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	5.78362827327553	5.9444542773976	5.75823109126574	5.47197712087561	5.47271496762808	5.57836680484914	-0.61304989324612	0.0518198624508949	0.290573968246786
Merged-chr5-76430116-4	chr5	76429596	76430596	+	927.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53981.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	3.38024760950375	3.24435828076806	3.24592012518001	3.04949690850104	3.17243409404859	3.01714095964133	-0.881119454292294	0.17721467626648	0.558188998856089
Merged-chr19-45675981-4	chr19	45675474	45676474	+	991.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15781.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.67555924250139	6.03561636242953	5.6123210107238	6.25441113560674	6.12482993121745	5.48782519923677	0.370863749451228	0.312553367636429	0.707190484237326
Merged-chr18-3282473-3	chr18	3281975	3282975	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110855)	promoter-TSS (NM_001110855)	-728.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	5.36451775337967	5.33429629186213	5.81685493905978	5.65359716633422	5.5174181922434	5.60327660435224	0.152911862530399	0.659828353915781	0.905631394705468
Merged-chr3-58507996-1	chr3	58507496	58508496	+	577.0	f1_balb.idr	Intergenic	Intergenic	-17825.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	4.75016390921573	4.50774976827924	4.81085906112245	4.77795878092668	4.72866763498173	4.98071076581831	0.314038083761098	0.44192031311812	0.803014502214766
Merged-chr14-55594311-2	chr14	55593811	55594811	+	919.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 6 of 21)	exon (NM_194346, exon 6 of 21)	2569.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	3.03311442740196	2.85826008433739	3.05298632953449	3.10469765656664	3.1892154948587	3.29490802034274	0.962311822275367	0.147613064511832	0.512587515483211
Merged-chr11-61494416-4	chr11	61493906	61494906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291035)	promoter-TSS (NM_001291035)	-140.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	7.38462918258246	7.51932227790831	7.14713163278426	7.34258783538512	7.39858090771594	6.82844152380077	-0.207032074696373	0.455253305313453	0.810850567748235
Merged-chr11-77406486-1	chr11	77405986	77406986	+	895.0	f0_balb.idr	intron (NM_177710, intron 4 of 14)	ORR1D2|LTR|ERVL-MaLR	-57427.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.48205962869067	4.73429352985575	4.5472602194538	4.48611172089167	4.30680383672628	4.97541376201308	0.0320802002329651	0.945097481837193	0.987875414328125
Merged-chr10-13470469-4	chr10	13469977	13470977	+	924.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	3919.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.29124257175034	4.49968763145991	4.38865086123848	3.9093684152019	3.7657316083113	4.10032638894915	-1.37762058248274	0.00516847419171614	0.0625630492499733
Merged-chr17-65764607-2	chr17	65764107	65765107	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	8145.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.741902232047	4.56680946196771	4.97600433841671	6.56198167337395	6.66831680427919	6.50656082015617	3.52113688052972	6.09550816616073e-24	8.45325072483171e-21
Merged-chr17-26499173-3	chr17	26498634	26499634	+	795.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.68803907842123	4.67235563457919	4.47617302983893	4.64227530534448	4.24428041878466	4.95868166377772	0.0384647316257346	0.934301176575814	0.985707838096286
Merged-chr1-171825659-3	chr1	171825189	171826189	+	829.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14008.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.2216049161735	5.51836919374079	5.18265155939231	4.29682214377834	4.78956679406543	4.60567703769871	-1.60043110836854	0.000212767975381764	0.00526121774013843
Merged-chr15-4024923-4	chr15	4024424	4025424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028266, intron 1 of 1)	intron (NR_028266, intron 1 of 1)	-1504.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	6.49539600019993	6.64946154936569	6.63178269854262	6.30583731018	6.71133192673726	6.17640007081157	-0.253093629094095	0.392971568467218	0.771425512588747
Merged-chr17-8838446-4	chr17	8837939	8838939	+	929.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-11546.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.01484366694568	4.07133962463362	3.82272376761341	3.61925013110711	3.2830625694193	3.56820293461259	-1.69752832574128	0.00348889532725011	0.0470760627551727
Merged-chr1-118514666-2	chr1	118514146	118515146	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359347, intron 20 of 40)	intron (NM_001359347, intron 20 of 40)	-55381.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	3.01629846691845	2.99746736922063	3.03488782225298	3.24424771531342	2.88375688278796	3.22333205445166	0.475202786348891	0.484297703604058	0.826783818659961
Merged-chr13-104937944-2	chr13	104937444	104938444	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74051.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	2.89659691543962	3.07601345988895	2.9320442014626	2.84547408985683	2.71219778488055	2.75516099396112	-1.02415456559416	0.154315711698577	0.523623755770949
Merged-chr10-52294300-3	chr10	52293815	52294815	+	695.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 5 of 10)	intron (NM_025705, intron 5 of 10)	60696.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	3.86931540750746	3.36638056337798	3.25448512488878	3.45431340577264	3.48111968509969	3.56341957144517	-0.121846288867884	0.84854759807821	0.964356989789491
Merged-chr17-46555518-3	chr17	46555028	46556028	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020493, exon 1 of 7)	exon (NM_020493, exon 1 of 7)	634.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	6.74320356041576	6.43478523016947	6.57712567095529	6.687413700778	6.46894011148916	6.94865574374472	0.181073741617311	0.526092516007245	0.849279136234443
Merged-chr2-79321837-4	chr2	79321339	79322339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 24 of 27)	intron (NM_010576, intron 24 of 27)	66413.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.15172674811182	4.98472873839654	5.00665472019409	5.40730145659047	5.59285427817579	5.18074181531656	0.737272703408789	0.0428945742745782	0.2596327734225
Merged-chr1-136344502-1	chr1	136344002	136345002	+	806.5	f0_balb.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	1602.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	4.45843002771628	4.31070626589263	4.77427686827913	4.44767668975421	4.39883809604221	4.45517610821643	-0.212445698097184	0.635135014368195	0.896439353901449
Merged-chr10-94039007-3	chr10	94038502	94039502	+	821.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	3001.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	4.12753692844091	3.93504981206497	3.99682741239955	5.26696011532981	5.16883347548124	4.7896335211702	2.7081571163153	9.01856982434893e-09	8.2645061447624e-07
Merged-chr3-152427871-4	chr3	152427351	152428351	+	889.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	31167.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.36440092890478	5.2472482898662	4.95602332566692	4.68816682428479	4.64564937930488	4.74887817562375	-1.14135780708348	0.00346957420057642	0.0468967397793312
Merged-chr17-94749996-4	chr17	94749498	94750498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024720)	promoter-TSS (NR_024720)	21.0	NM_001357136	76781.0	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	7.24516729026353	7.51472190420499	7.2705684651384	7.61523722225402	7.53234319533714	7.11394709340066	0.138746361766318	0.594745470182332	0.87924603206665
Merged-chr17-55961438-2	chr17	55960938	55961938	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 2 of 7)	ORR1C2|LTR|ERVL-MaLR	-2037.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	2.95487665863653	2.68865503287231	3.0967723304588	2.97062901364225	2.7330458353166	2.74969422311183	-0.479360071339218	0.51995260035208	0.846082496556008
Merged-chr2-102829355-3	chr2	102828830	102829830	+	812.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039151, intron 5 of 8)	MERVL-int|LTR|ERVL	72335.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.1547525661857	3.20879148125312	3.28905511683796	3.12343336570043	2.92929964547557	3.30545650629239	-0.414171395043867	0.529619870844084	0.851008230596217
Merged-chr19-16086756-4	chr19	16086247	16087247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-46084.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.0856372346999	3.98632330771518	3.85598350061307	4.23926174796441	4.32363052602372	4.36000453756634	0.904591143078103	0.0599774857663087	0.317073284320274
Merged-chr10-77605487-4	chr10	77604985	77605985	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	-612.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	6.54275864549469	6.8526357470494	6.75533777279979	6.54061029674683	7.01863429226436	6.67088991866142	0.0726895994471724	0.798836202999591	0.952063885260145
Merged-chr6-87742277-4	chr6	87741764	87742764	+	866.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	MTD|LTR|ERVL-MaLR	11395.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.63411831546988	4.15221424180499	3.94758844799579	4.43373764674764	4.23432684386877	4.22759894418343	0.0374951426737517	0.942098391626769	0.987097394617189
Merged-chr8-125728602-2	chr8	125728102	125729102	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5601.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	3.27354451728297	3.4401346122785	3.7092569626459	3.62468897405699	3.39134415009035	4.00525657203513	0.730912639793551	0.242913863566529	0.640158888947987
Merged-chr13-56631524-4	chr13	56631041	56632041	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 10 of 16)	intron (NR_155548, intron 10 of 16)	21955.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.08228834828486	4.09646907576726	4.21366585902251	4.45118859851239	4.07803978392467	4.36915114322035	0.480293878408145	0.313701199320273	0.708132564679568
Merged-chr15-64058393-3	chr15	64057933	64058933	+	670.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	1331.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.72188880001648	5.5672249583612	6.06598734349196	6.05815972088822	5.94400480838525	5.97330390161532	0.361952073061722	0.257172397251879	0.654457620898992
Merged-chr2-29889172-3	chr2	29888672	29889672	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	158.0	NM_001355137	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	7.69002074155377	7.5844814741183	7.64367967311681	7.69695765133549	7.68186018166581	7.56759838484432	0.0193432959735797	0.929443131142763	0.98413295398716
Merged-chr2-91280154-3	chr2	91279637	91280637	+	879.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 7 of 8)	intron (NM_175123, intron 7 of 8)	15022.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	3.25624050934329	2.9388321580441	3.27473954178525	3.44575144129267	3.14782391872838	2.84575688945781	0.0229483422075022	0.975326993940322	0.994454548709104
Merged-chr11-105592086-4	chr11	105591565	105592565	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	2079.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	4.73235455454848	4.95582693063607	5.06476793330522	4.95218671179624	4.87860319276913	4.80721748344068	-0.0770472291283561	0.843377300866674	0.963409871508
Merged-chr12-51865971-4	chr12	51865474	51866474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36438.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	8.92461798543495	9.1481374061111	8.38770030447349	8.59711163995015	8.43611110952688	8.35051414908848	-0.549933395634274	0.0351602497398342	0.230081195714823
Merged-chr13-37338852-3	chr13	37338347	37339347	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6498.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.44589273857878	5.51358109402684	5.40475478343056	5.44732303736137	5.67548362514146	5.9551050538533	0.453954289994073	0.18256275566763	0.565398543501872
Merged-chr5-125330272-3	chr5	125329766	125330766	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	10828.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.82537350452352	5.95092653067969	6.08648774484637	6.12927089639457	6.0335593537382	6.1255894081952	0.246696438372333	0.399114375057331	0.775688105708038
Merged-chr6-87851131-4	chr6	87850686	87851686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013493)	promoter-TSS (NM_013493)	-80.0	NM_001355195	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	8.62937343739028	8.88277038591494	8.43003371585645	8.31481408373803	8.30838714873934	8.27417574997973	-0.509287614692355	0.0222747345693693	0.173396586588837
Merged-chr17-42910628-4	chr17	42910123	42911123	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-34199.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.98449298298248	5.12154406247878	5.42820672759531	6.61141341681677	6.44036497075769	6.40587385627526	2.37948157955594	1.52773997540569e-13	3.38987167662818e-11
Merged-chr15-84236476-2	chr15	84235976	84236976	+	652.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	4433.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.83785708897309	5.50869168194144	5.75972980992654	5.82868572945072	5.41058735454904	5.98429579376392	0.0798899855443602	0.819844064962434	0.957345733856242
Merged-chr2-91213461-2	chr2	91212961	91213961	+	610.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007387, exon 11 of 11)	3' UTR (NM_007387, exon 11 of 11)	10549.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	2.88380618492314	3.2483396453046	3.19687638295006	3.13040783581254	3.00475754122557	3.26815335599892	0.0641864646301708	0.924750335317875	0.983070278897208
Merged-chr10-53893237-4	chr10	53892734	53893734	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-142325.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	2.88390263998149	2.88156048045404	2.82565788856274	2.49704391016276	2.7197456531188	2.6478166943319	-1.28439498047531	0.0985485363228356	1
Merged-chr9-120493287-4	chr9	120492748	120493748	+	983.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026892, intron 1 of 3)	intron (NM_026892, intron 1 of 3)	642.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	7.48597303481371	7.9968202069315	7.63304250302002	7.24237692487023	7.31667759374327	7.03316471304095	-0.772723250813359	0.00343267589114441	0.0465582531103149
Merged-chr19-47510808-4	chr19	47510305	47511305	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 7 of 9)	intron (NM_175360, intron 7 of 9)	-2177.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	5.97550201325793	6.13079996925024	5.93988493308023	5.4050102011174	5.32421092275481	5.47368374014219	-1.152855768931	0.000244611809560923	0.00589448579494505
Merged-chr1-144317200-2	chr1	144316700	144317700	+	823.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-68096.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.12478238952336	7.22095812554473	7.10018225136706	6.5811105177301	6.72226840468401	6.86228264018881	-0.660661286024415	0.00785421541944108	0.0849296369877652
Merged-chr1-152555578-1	chr1	152555078	152556078	+	652.0	f0_balb.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69639.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.38183513666695	6.58277655214248	6.64941741225615	6.37106953497346	6.37188643553354	6.64499659857506	-0.125878012959901	0.648415258724467	0.901777316529257
Merged-chr4-9246556-3	chr4	9246071	9247071	+	755.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12A|LTR|ERVK	-22722.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.82390118633821	3.90718484588835	4.17305395781686	3.96699412628459	3.67314481018185	4.58523084073218	0.439388357562469	0.451830823971073	0.809245753174589
Merged-chr2-79049451-2	chr2	79048951	79049951	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179773.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	2.21649268764347	2.25343342357313	2.09399060605894	2.39991374932634	2.268609400622	2.43958344494418	1.19775317665975	0.178491255513269	1
Merged-chr3-144698157-4	chr3	144697660	144698660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	22175.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	8.7928128288226	8.87940560100978	8.27389891448708	8.5921350283151	9.03384011304587	8.36145883329244	0.0269992210588023	0.923236245382297	0.982699256056545
Merged-chr11-97187155-4	chr11	97186660	97187660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008379, intron 2 of 21)	CpG	732.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	6.11978166629511	6.06006936311133	6.17383837190405	6.15874152029065	6.08027873743454	6.17166581139939	0.0322578258443364	0.90861742301098	0.97927672033099
Merged-chr12-3861890-4	chr12	3861387	3862387	+	951.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 2 of 4)	non-coding (NR_045884, exon 2 of 4)	357.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.35111804793183	5.28482118182872	5.09177171051781	5.36666525512724	5.16783306297501	4.8035811076694	-0.22336420144874	0.563370406498022	0.865926383742263
Merged-chr11-106657093-4	chr11	106656594	106657594	+	960.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-44164.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.62249876216018	4.25556662416128	4.56042842123333	4.19068328792674	4.02236174329221	4.20535351213347	-0.961644204048241	0.0416379394688605	0.255125895973854
Merged-chr5-141055157-2	chr5	141054657	141055657	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54561.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.0518120766737	5.11039986193794	4.54237745246175	5.20929563616813	5.40910708746079	4.79678354149506	0.495549834103325	0.260268180429687	0.657649400461384
Merged-chr12-52300700-1	chr12	52300200	52301200	+	672.0	f1_balb.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	179909.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	2.52616704541884	2.37779930191143	2.45602186404828	2.81759810801576	2.50822767443785	3.02172201246431	1.94396947299662	0.0210389683797314	0.16689965496622
Merged-chr4-32982850-3	chr4	32982386	32983386	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027491)	promoter-TSS (NM_027491)	-112.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	4.31644070840573	3.9230776310915	3.60297467083977	3.68906978323157	3.41554742790184	3.36525301588494	-1.62796732487733	0.00950764524056963	0.0970451601051665
Merged-chr18-39636271-4	chr18	39635778	39636778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137219.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.46264570228443	7.35652278081866	7.634311185952	7.62234761199944	7.66223143342234	7.62717351308109	0.225893517676606	0.318504538658798	0.712403581966111
Merged-chr14-31195351-4	chr14	31194835	31195835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11491.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	6.04382735226184	6.16282848553701	6.52662777717222	6.03310661172856	5.69653816365401	6.29341094186207	-0.39776590807966	0.235011338653218	0.631139367820568
Merged-chr11-106759220-4	chr11	106758698	106759698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 4 of 9)	intron (NR_073165, intron 4 of 9)	7972.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	4.94318413834104	4.88484983901839	4.80256198146229	4.70752988742433	4.7729209307348	5.11165538879261	-0.0377943901511933	0.92444846055708	0.982960139621551
Merged-chr11-96768076-2	chr11	96767576	96768576	+	586.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163389, exon 8 of 8)	3' UTR (NM_001163389, exon 8 of 8)	9479.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	2.39365134737698	2.57385879864201	2.94805878928511	2.7370200130249	2.52704530788071	3.23291228632601	1.01529245169385	0.244871930612906	0.642328539530238
Merged-chr16-19963185-4	chr16	19962697	19963697	+	864.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 2 of 6)	Lx8|LINE|L1	19852.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.36894770825328	3.31270514991263	3.57419495525818	3.54512430107084	3.29731639721382	3.69357609087061	0.359923457014644	0.55169644073253	0.86140317538395
Merged-chr17-70964959-2	chr17	70964459	70965459	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25557.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.43372335141268	3.51668965872475	3.38634330531199	3.32526510898716	3.47573835551403	3.45750030458787	-0.104030250014112	0.859366837955223	0.967267211164924
Merged-chr17-6656034-4	chr17	6655575	6656575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199948)	promoter-TSS (NM_001199948)	-136.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	6.10335239926323	6.24241723841552	6.15553851582274	5.94874969614734	6.23552713863784	6.39082954658358	0.0511879089371596	0.86277157435838	0.96809238390547
Merged-chr3-130878995-4	chr3	130878496	130879496	+	945.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148598.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	2.79659047654856	2.8618412809802	2.91582057082634	2.86026558435324	2.64391572062244	2.61078554456594	-0.76688757031754	0.303678964214661	0.700191732830124
Merged-chr11-69424083-4	chr11	69423578	69424578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-10403.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.30555885996941	6.82302929756986	6.92945097501901	6.96840159891632	7.07448669370101	6.88604328053468	-0.0883553760236152	0.743459989406494	0.935641647360521
Merged-chr2-4500205-2	chr2	4499705	4500705	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-59549.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.3803674767663	5.21614075597487	5.44858915374104	5.20146565715746	5.59153667812872	5.39368254072673	0.132975822580122	0.707268760950476	0.923301165835305
Merged-chr9-70841985-4	chr9	70841484	70842484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	92824.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	7.02859285939521	7.01934788716858	7.02100662670407	6.89064058811394	7.34836047995345	6.85061412608227	0.0621968799274681	0.817874281642972	0.956835450074313
Merged-chr14-56888117-4	chr14	56887617	56888617	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177627, intron 2 of 2)	intron (NM_177627, intron 2 of 2)	1274.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	4.72797779245465	4.98823359277751	5.48481518735056	5.05585797608349	5.23240164953368	5.32663545000153	0.236349188356997	0.568404091057756	0.868549528189122
Merged-chr13-49206503-2	chr13	49206003	49207003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	intron (NM_026738, intron 2 of 5)	9523.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	5.90903529452927	5.84250357760398	5.74958241802203	6.09541814384771	5.8181373162161	6.0749173963816	0.271686519610516	0.373612800535174	0.757529198534216
Merged-chr18-54979325-1	chr18	54978825	54979825	+	723.5	f0_balb.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	10855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.92807019903516	5.65962493712187	5.28570708962518	5.63978668004286	5.76206238539609	5.71650451030415	0.0781140200015992	0.823120992141157	0.958214218900685
Merged-chr7-74668385-4	chr7	74667895	74668895	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113615.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.72675850985771	2.79976147011388	3.01969430155485	3.01558835310255	2.96934395614564	3.31009298473792	1.19565930834431	0.0939936311642305	0.408384875596865
Merged-chr11-20744464-1	chr11	20743964	20744964	+	563.0	f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2908.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	2.67624556142899	2.93856938766607	2.65742419273339	2.78097054113933	2.98356887259379	3.04040550282137	0.836320951437248	0.26617077843478	0.663934832184218
Merged-chr2-103682536-2	chr2	103682017	103683017	+	663.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78753.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	3.69184446823998	3.51986115463586	3.69502290320863	3.72278825036302	4.09948230976741	3.86867695065192	0.906961855926293	0.0975382584547862	0.41643816560654
Merged-chr11-73186277-4	chr11	73185788	73186788	+	771.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 10 of 11)	intron (NM_001357891, intron 10 of 11)	9205.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	3.33900760856192	3.33868918323917	3.59442907549075	3.39909865044738	3.16143906538908	3.71196259934405	0.0413060564349531	0.948075360942475	0.988044570943882
Merged-chr6-73711002-4	chr6	73710511	73711511	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-239990.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.03717612927999	3.81096988762111	3.79488595562853	3.90606991697121	3.61517127000024	3.81321945889392	-0.352716925107904	0.510466103024185	0.840886591313675
Merged-chr5-72723596-4	chr5	72723084	72724084	+	951.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289494, intron 5 of 13)	intron (NM_001289494, intron 5 of 13)	13018.0	NM_013698	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	2.74824632306681	2.51692073458964	2.48416471148641	2.70546206786296	2.58944843294841	2.81393644903177	0.606698803836915	0.439852867973428	1
Merged-chr14-14011999-2	chr14	14011499	14012499	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	-492.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	5.64914204892229	5.84163782539509	5.82310964932336	5.68422780975527	5.74735490360593	6.06452519943776	0.108135644110666	0.734894247445517	0.932617455907478
Merged-chr3-130761147-4	chr3	130760591	130761591	+	867.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30693.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	3.29357281432269	3.17920053887632	3.14435350851892	3.13495261097268	2.74172580531497	3.27356724262395	-0.618870973689441	0.39106686823398	0.770112153342334
Merged-chr17-70985710-4	chr17	70985201	70986201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	4815.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.1287337008588	5.00790033471478	5.10648768865312	5.06019732668732	5.22463726356706	5.32888584719949	0.259756363444891	0.471152618210718	0.819888573544447
Merged-chr11-63828264-2	chr11	63827764	63828764	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94020.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	2.94560029584382	2.83904875678871	2.83195430827253	3.13073115955287	3.05830695057339	3.03079602029639	0.942935313677889	0.167919135029069	0.544130536211812
Merged-chr2-114654774-4	chr2	114654296	114655296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 1 of 8)	CpG	168.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	7.04750856736652	7.12842019549187	6.87166413132411	6.98770130770931	6.94913577781932	6.75975128387858	-0.181123686701649	0.470894848168599	0.819784379107259
Merged-chr5-16541954-4	chr5	16541440	16542440	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11555.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.4603441811542	3.42491922593708	3.57702682457709	3.51096044762669	3.2519598089915	3.59530434889445	-0.121171489609282	0.838647363261712	0.96255643337768
Merged-chr3-100437599-2	chr3	100437099	100438099	+	686.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040543, exon 3 of 3)	non-coding (NR_040543, exon 3 of 3)	11194.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	3.73598108372234	3.56864533611457	3.35785335987218	3.85906983217708	3.99298311834177	3.78070534381636	1.03620906487107	0.0723994206187056	0.353420668214738
Merged-chr4-59368318-4	chr4	59367802	59368802	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	70331.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.22011083403187	4.05959220674653	3.9470334354127	3.65785658784051	3.65942213101317	3.86585171263353	-1.14171388808573	0.0294387997940514	0.206353565053685
Merged-chr13-113434855-2	chr13	113434355	113435355	+	856.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67989.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.32054436107313	6.26745507354206	6.38117524005281	6.0949542559954	5.92648068139815	6.03249389219447	-0.515984104545957	0.0667080166737022	0.337507032189311
Merged-chr10-69211807-4	chr10	69211319	69212319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-838.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.8935433181831	6.97298822132924	6.88610127347816	6.91124803949613	7.0007253870005	7.07911352367402	0.116873106169478	0.628967126866406	0.89397074295706
Merged-chr14-103719431-4	chr14	103718931	103719931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19999.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	6.61240030710218	6.86299067145136	6.20952954574089	5.92228706181733	5.87040198316318	5.48957046921841	-1.36532475568365	5.07663404144869e-05	0.00160228356665806
Merged-chr15-77933970-4	chr15	77933459	77934459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4965.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	2.78680739723645	2.62014801904039	2.75166377316268	2.57588594413599	2.48377922956917	2.70253908008432	-0.766603564492223	0.317827595669714	1
Merged-chr5-24685750-4	chr5	24685246	24686246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-69.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	8.24653710059387	7.98027698484335	8.04129491161008	8.25634029948868	8.2933773512804	8.02334750728034	0.148134496175797	0.507423728696408	0.839080935975888
Merged-chr8-46828922-3	chr8	46828422	46829422	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	89177.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.68970833643862	4.76093589253527	5.26471633118162	5.06097739258073	4.95725824826695	4.86767702649622	0.109603068169914	0.791147042470325	0.949694766870106
Merged-chr4-53227926-4	chr4	53227394	53228394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18302.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	6.49567542382097	6.19810142330283	6.09022062152119	6.33933632093027	6.37258856181721	5.57503269334566	-0.198076979235261	0.579881832642717	0.872644657556124
Merged-chr17-50189613-6	chr17	50189200	50190200	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	797.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.06057610138416	6.1571156566317	5.50305141963277	5.9486109239222	6.0541545614831	5.63037136715262	-0.0900735795285975	0.798496977300822	0.951963442233528
Merged-chr14-25483462-4	chr14	25482969	25483969	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	24284.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.78416752946904	6.85820720389393	6.62762088564409	6.55095615047057	6.4206481550226	5.89720036972142	-0.689203744308933	0.0244629098097941	0.184332872245682
Merged-chr5-74470983-4	chr5	74470496	74471496	+	805.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 3 of 8)	L1M2|LINE|L1	60746.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	3.30328362806884	3.35538030398323	3.39409896366806	3.23395861541087	3.37152448042132	3.56917774465023	0.169647574453376	0.779154416917039	0.945710994231145
Merged-chr11-121229151-4	chr11	121228652	121229652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254735)	promoter-TSS (NM_001254735)	157.0	NM_144832	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	7.80045279374791	8.18213372537185	7.97754072409817	7.88354446613685	8.23931036109028	7.6609370100425	-0.0539499130612685	0.836262491167956	0.961960888484752
Merged-chr5-74068500-4	chr5	74068066	74069066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177561)	promoter-TSS (NM_177561)	-155.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	5.98075345086386	5.953430977394	6.15183747964744	5.84892098552551	5.80570190653746	5.92826210098207	-0.294178070689866	0.320951591929172	0.714668702131303
Merged-chr13-51108930-2	chr13	51108430	51109430	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	Tigger7|DNA|TcMar-Tigger	7383.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	2.72882786083099	2.81233377083729	2.89432190326008	2.80774007646869	2.72874149628298	2.96640357311866	0.110255797325921	0.877391111615911	0.971560353131186
Merged-chr3-153571645-11	chr3	153571135	153572135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	153498.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	6.94891810705804	7.08665664099281	6.6713060506249	7.3597077531845	7.60368671448125	6.97096757284768	0.639702599438054	0.0258127367418843	0.190511459891672
Merged-chr15-53346192-4	chr15	53345708	53346708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010162)	promoter-TSS (NM_010162)	-25.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.34703542963557	6.59304335283407	6.76547680146794	6.29281277813659	6.2702920772713	6.70651126104632	-0.234186923304172	0.43262724370523	0.797387256489639
Merged-chr3-65523576-4	chr3	65523080	65524080	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4867.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	2.55919318369683	2.42039127387223	2.45438039363345	2.67733500618386	2.75575641246406	2.78503711172825	1.51008860122716	0.056326138181464	1
Merged-chr3-146158546-4	chr3	146158059	146159059	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	B4|SINE|B4	8385.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	5.95426312385142	5.93685504499153	5.77123978452685	5.86316435588621	5.94307545363121	5.95714550747813	0.0427002599236694	0.885897368793016	0.973636976161493
Merged-chr5-148546910-2	chr5	148546410	148547410	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	4763.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.58506944569717	4.55867602858948	4.69681017451091	5.10642355386028	5.35210371195406	5.09862291748044	1.30843144343269	0.000713471283430695	0.0138577307543654
Merged-chr12-86946218-2	chr12	86945718	86946718	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289430)	promoter-TSS (NM_001289430)	-823.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	5.5176759463068	6.02944929644276	6.06024699171074	5.8624667980067	5.89210452417519	5.63061111828899	-0.143518333840525	0.673441948397087	0.911417287047018
Merged-chr5-129007626-2	chr5	129007122	129008122	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	950.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	4.51169326439035	4.66030587444769	4.65292722147442	4.47445279708646	4.58366743632961	4.51550618546362	-0.195642638008615	0.639612992520512	0.898199312621371
Merged-chr16-91618998-4	chr16	91618514	91619514	+	941.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138664)	promoter-TSS (NM_138664)	-15.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	4.49324457493776	4.10828024492408	4.0579628920282	4.3323877083389	4.06915288058203	4.12833816228952	-0.168896420950581	0.733392186443754	0.932052212786391
Merged-chr6-148946485-4	chr6	148945974	148946974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019643)	promoter-TSS (NM_019643)	-4.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	4.07779578698766	4.30721211226844	4.15432447333441	4.10706955584634	3.95085248277873	4.17638826213468	-0.319002936684225	0.50824145740415	0.839777201102046
Merged-chr10-84146293-3	chr10	84145809	84146809	+	636.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-45612.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	3.33149095013286	3.30018495294279	3.36098674680541	3.20396485575236	3.40301012954471	3.37654855740779	0.0109067924428549	0.985632620764234	0.99691465847822
Merged-chr5-137331101-4	chr5	137330587	137331587	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359611, intron 4 of 14)	intron (NM_001359611, intron 4 of 14)	2495.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	3.49308371464775	3.29601151809842	3.53047080942576	3.55289496532148	3.4458446097545	3.54766975563483	0.274593783485369	0.637005290186029	0.897256731014262
Merged-chr16-38197450-3	chr16	38196938	38197938	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 7 of 11)	intron (NM_001347232, intron 7 of 11)	97386.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	3.59537637312299	3.65055596731485	3.6415330389254	3.62199756450266	3.62740743090208	3.60509503500309	-0.0347586578133239	0.949225429459183	0.988169196639905
Merged-chr1-89555566-4	chr1	89555069	89556069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	100758.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.04136810102827	4.4155354328415	4.18905775072268	4.39862559512885	4.16103069772958	4.15719106511314	-0.923848774676409	0.0746332675790862	0.359551407618178
Merged-chr17-36273825-2	chr17	36273325	36274325	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1821.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	2.71945618900847	2.97479868096439	3.12372712982423	2.87022687564761	2.88435272871249	3.19458006816282	0.188628843329414	0.794438814207448	0.950711250903359
Merged-chr8-95336519-2	chr8	95336019	95337019	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	4235.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	4.70414698666463	4.86701877449504	4.55617694135925	4.85538338310913	5.16197784393991	4.71175015491091	0.477203143973125	0.254590365182469	0.651643384054634
Merged-chr6-121109753-2	chr6	121109280	121110280	+	826.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	CpG	21242.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.92670381024659	3.61409544179671	4.04623012013507	3.94274111804203	3.58546087455331	3.61251087653482	-0.466362025468439	0.412124761690707	0.784314318706468
Merged-chr1-24481804-4	chr1	24481305	24482305	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	105632.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.17412415479237	2.90993678903719	3.27665039608804	3.31020925689103	3.33511200108163	2.92187352421515	0.336616045216834	0.633995573435175	0.896247399650521
Merged-chr10-54117971-4	chr10	54117478	54118478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42056.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	7.31410230000734	6.95777447796494	6.85777883955451	6.88999728549271	6.92966467923824	7.04239943949707	-0.173032209855031	0.512652739589818	0.842071365374768
Merged-chr12-112629548-4	chr12	112629041	112630041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	9494.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	8.32146472104508	8.22586563941403	7.7693504067854	7.93357908246341	8.35050733250621	7.76195749547632	-0.120417197420493	0.662606270359117	0.906804932599005
Merged-chr4-136129547-4	chr4	136129046	136130046	+	924.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-14276.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.84074244487273	3.69406832229193	3.62879998928557	4.37822960773195	3.91122701559043	4.02469439742232	1.19516540029787	0.0275267308944471	0.197845557453629
Merged-chr15-58416837-2	chr15	58416337	58417337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	1369.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.04093328564532	6.04549711105348	5.94903687381886	6.14769954028085	6.22299820203287	6.01044819990786	0.207636740968207	0.470581416473906	0.819523993651913
Merged-chr13-67173173-4	chr13	67172680	67173680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013769)	promoter-TSS (NM_001013769)	-2.0	NM_001013769	380855.0	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding	6.41167270569896	6.55324899910185	6.59515186630916	6.81970946317085	6.78845141279303	6.45755328581118	0.300225956466442	0.268302518102713	0.665391603019622
Merged-chr10-67210145-4	chr10	67209673	67210673	+	799.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	MTC|LTR|ERVL-MaLR	24423.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.79111992363033	5.3964610609779	5.62139589917337	5.32987576643569	5.35743347329645	5.78374591599505	-0.222011295749713	0.534662962751576	0.853068627162717
Merged-chr5-112278973-2	chr5	112278473	112279473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	PB1D9|SINE|Alu	2282.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.92157112622784	6.23652772300893	5.82828245505514	6.13172643412364	5.91813701556471	5.78437087070027	-0.104303342229646	0.743392284152603	0.935615824630138
Merged-chr9-89704507-3	chr9	89704019	89705019	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025360, intron 1 of 2)	intron (NM_025360, intron 1 of 2)	524.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	5.18695995756519	5.29469810485328	5.14089443952025	5.00734497392754	5.00975368770485	4.88030259275234	-0.508363534604023	0.162926728621791	0.536350806900858
Merged-chr7-114086290-4	chr7	114085808	114086808	+	891.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	31473.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.59017676817992	4.61661464811008	4.60844136974913	5.23553384559357	4.87799087409021	5.02095491364462	1.0038427127379	0.0119911277420131	0.114225272714072
Merged-chr2-160356386-4	chr2	160355897	160356897	+	871.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10668.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.86477409611655	2.72445642505488	2.91697587635168	2.51549588503624	2.42437658228728	2.81432768737175	-1.39906686374635	0.0842543408516667	0.38406021658735
Merged-chr13-66905271-4	chr13	66904679	66905679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177750)	promoter-TSS (NM_001177750)	171.0	NM_026219	67530.0	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	7.38701313593304	7.50769492643532	7.38160211627512	8.16550102121801	8.47955428784602	7.93583006208056	1.13456732052868	3.93823120969391e-06	0.000179754439109276
Merged-chr9-120709443-3	chr9	120708958	120709958	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	132127.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.33447879659319	3.71756653293302	3.38259326556425	2.80446971020628	2.95934113064368	3.10451597364079	-2.43628848595294	0.000972714102237229	0.0176296220908202
Merged-chr2-23039154-4	chr2	23038622	23039622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	1119.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	7.86940048730904	7.95215769837111	7.66907911414046	7.85852674543632	8.16887274703587	7.82356478238987	0.179473256585238	0.448008189878201	0.806968807271626
Merged-chr10-128491739-2	chr10	128491239	128492239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001317218, exon 6 of 7)	exon (NM_001317218, exon 6 of 7)	1270.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	4.18639418558349	3.96278997967946	4.36562674258751	4.2854830004388	4.42473417764	4.62865395765424	0.734656585079513	0.121231090018171	0.465650022624116
Merged-chr9-13466596-4	chr9	13466098	13467098	+	899.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35237.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	6.325856980623	6.50178155311001	6.47527232535937	6.19925782596056	6.48875844968997	6.36939197379612	-0.118369457228593	0.66974382403531	0.909740802307883
Merged-chr2-127079281-4	chr2	127078771	127079771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	RLTR28|LTR|ERVL	8614.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	7.2711318011525	7.28218734256731	7.41930670937604	7.27353123761426	7.48503370306267	7.50630317931331	0.153306196326793	0.511226270673251	0.841331921585713
Merged-chr2-116976009-4	chr2	116975480	116976480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	75828.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	8.43870824330024	8.61968621435032	8.26566288466614	8.48881242644146	8.6785513811933	8.50414912455546	0.150012321834367	0.492413397367834	0.83104217378051
Merged-chr2-181487764-5	chr2	181487318	181488318	+	754.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5388.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	5.74289101372067	5.76258689971071	6.38607639737224	5.67808288514304	6.06245512998375	5.83638849147341	-0.198029785158302	0.577978667276994	0.872267143317025
Merged-chr15-10469340-2	chr15	10468840	10469840	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030046, intron 1 of 11)	A-rich|Low_complexity|Low_complexity	1176.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	3.670952819408	4.11603722699835	3.74331096659409	3.85610565522868	3.94277257542857	4.11021255194423	0.314722291730234	0.562430582302339	0.865744359036709
Merged-chr17-35173531-4	chr17	35173055	35174055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	2497.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	7.39397936823272	7.48735242640237	7.49225172984326	7.64617199464033	8.0414824883455	7.65583131012824	0.5007278708819	0.0382681877547061	0.242109136761982
Merged-chr13-59011711-4	chr13	59011223	59012223	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	204026.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	3.33566329952082	3.62297320828742	3.46205169122322	3.50225829545002	3.29612279551051	3.53295645630484	-0.145336150567463	0.808074318537775	0.954605755203254
Merged-chr16-18813146-3	chr16	18812649	18813649	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011672, intron 1 of 11)	intron (NM_011672, intron 1 of 11)	855.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	6.20048679442186	6.15807108916463	5.59778757768816	6.25820128370029	6.46082559471954	6.24575215355915	0.504608839175321	0.119827582992811	0.46270551001204
Merged-chr19-55218609-4	chr19	55218152	55219152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	22584.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	6.00190331758609	5.90426844698411	6.09523050281734	6.1757840725609	5.97721629650733	6.11278053031314	0.155105199285618	0.595077905010811	0.879312736570733
Merged-chr5-66085428-2	chr5	66084928	66085928	+	840.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	12751.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.51608720037219	4.07433299572234	4.15805384242823	4.68143749112373	4.74358774298583	4.86016940669727	1.21262808743613	0.00842181890826458	0.0893032633769439
Merged-chr9-21367008-2	chr9	21366508	21367508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-863.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	6.61043481486855	6.9282465932151	7.07202251394811	6.97630021395089	7.24660157788819	6.7129402410513	0.19763370074746	0.493115237878806	0.831208279358962
Merged-chr18-5099605-2	chr18	5099105	5100105	+	713.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 26 of 35)	exon (NM_153153, exon 26 of 35)	53016.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	3.03649501885824	3.05029635983701	3.66479208770849	2.9058773608777	2.86602644230234	3.3491589163815	-0.930843604811627	0.213334607982051	0.606196206830948
Merged-chr17-15829650-3	chr17	15829166	15830166	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3080.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.9897962737713	2.7815037122416	3.03258125947414	3.1485685101669	2.82515058377104	3.16221024380292	0.524533573745801	0.457813733311785	0.812540681905075
Merged-chr15-95826119-4	chr15	95825596	95826596	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3976.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.08584485858023	7.04107260064863	6.68274920874123	7.52114741978216	7.55172837147642	6.93762081760374	0.627126229418251	0.0306872863138811	0.211814825350927
Merged-chr4-116144554-4	chr4	116144036	116145036	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026547)	promoter-TSS (NM_026547)	80.0	NM_026547	68075.0	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	2.53455134249525	2.65526901042871	2.84017845799407	2.55055883642111	2.54585336643528	2.61192543443787	-0.618758284803052	0.422984379331956	1
Merged-chr4-149322515-2	chr4	149322015	149323015	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12124.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	2.62173219097702	2.71902439668413	2.85803496582206	2.72645453210074	2.82171650416083	2.93012525053459	0.489045855376875	0.502276254933309	0.836403350554169
Merged-chr6-134877035-3	chr6	134876526	134877526	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167694, intron 3 of 3)	intron (NM_001167694, intron 3 of 3)	10759.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	2.5935842237277	2.33621991467675	2.49011905755506	2.8792258846621	2.79342867953234	2.82495547596818	2.09427284847496	0.0122984706394744	1
Merged-chr17-10309349-2	chr17	10308849	10309849	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	10012.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	3.99039686228611	3.91327011290907	3.96023652797829	3.71351815950316	3.91594419736615	4.02858680103429	-0.200672853489578	0.694820401574436	0.919217788511748
Merged-chr18-39854045-3	chr18	39853545	39854545	+	736.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80548.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.09443899615635	2.87736989784953	3.40168454140637	3.21255682213453	3.03870550657376	3.42040795570557	0.383816352565363	0.580962272406593	0.873185386905448
Merged-chr11-22286538-3	chr11	22286012	22287012	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252515, intron 1 of 24)	intron (NM_001252515, intron 1 of 24)	283.0	NM_153078	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	4.31549607363476	3.85835662165754	3.87354105389048	4.19183133369948	3.60944233727267	3.78245318534121	-0.452407179621916	0.43276175682005	0.797479990906892
Merged-chr17-45619567-2	chr17	45619067	45620067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17465.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	6.77886633386751	7.24469025872447	7.22853310492912	7.30913353694902	7.49091065755305	7.32012041001908	0.418434191396831	0.11101337909145	0.445047839168872
Merged-chr2-172438949-2	chr2	172438449	172439449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	2.86722101139887	3.06395832031285	2.84659808129189	2.83450937402438	2.82498382554363	3.03952620386104	-0.169461828968329	0.810245308566705	0.95499591528158
Merged-chr2-167713301-7	chr2	167712809	167713809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	22132.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.9396550426036	5.86231747906239	5.83970109760948	5.93993486624407	6.08602256594724	5.97409522958619	0.214089580167815	0.466604255107873	0.817586753758551
Merged-chr10-96618020-3	chr10	96617474	96618474	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007569, intron 1 of 1)	intron (NM_007569, intron 1 of 1)	973.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	8.50593469523597	8.54202895211006	8.30048964147921	8.4012944080251	8.7837222268607	8.52907325208245	0.177556262660019	0.428886921853187	0.795570481157701
Merged-chr12-69574703-8	chr12	69574185	69575185	+	702.510437	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8343.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	6.36745517413638	6.63886882675736	6.2198413139808	6.4171930784409	6.60975248239594	5.99907536365947	-0.0768847062575153	0.808601444335834	0.954721853010197
Merged-chr13-23535878-2	chr13	23535378	23536378	+	835.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145073)	TTS (NM_145073)	460.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	3.5457447654639	3.51012063928304	3.50868244994131	3.6346889869963	3.76680689373913	3.58017767491474	0.515383477356317	0.355158314998378	0.742139956664617
Merged-chr5-64377924-4	chr5	64377423	64378423	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	90019.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	7.1335247963185	6.94953948227766	6.98552335772772	7.32875087310736	7.41394935463072	7.31700666550043	0.493395507519456	0.0360290483255916	0.233417546642
Merged-chr17-45580660-2	chr17	45580160	45581160	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	-7399.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	3.24013513883225	2.89908116441557	3.01506773527354	2.95549255060555	2.5752275908337	2.70703611909888	-1.54376078833731	0.0493303328880338	0.282313652259982
Merged-chr1-33883547-4	chr1	33883064	33884064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177235, exon 2 of 7)	5' UTR (NM_177235, exon 2 of 7)	24057.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	7.27545852105957	7.50779376878114	7.11426820868134	7.18408100319112	7.2006522959557	6.99589848550494	-0.271246889101546	0.280769538574955	0.678846264691369
Merged-chr7-141328822-2	chr7	141328322	141329322	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027797, intron 1 of 5)	intron (NM_027797, intron 1 of 5)	692.0	NM_027797	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	5.05572307255833	5.22938685524902	5.37667000585273	5.2956337049435	5.30454526304952	4.85200171134519	-0.0823705349024719	0.829928749987064	0.960135212046345
Merged-chr2-32587913-4	chr2	32587426	32588426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	848.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	7.87974463732789	7.7715437157228	7.6160015764693	8.23585555609107	8.45058389846775	7.47151500614302	0.517507314861603	0.0850021015363902	0.386115016084723
Merged-chr11-26387360-4	chr11	26386891	26387891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277273, intron 1 of 13)	CpG	307.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	6.32000313470155	6.154259543754	6.07359914217638	6.8721816432021	6.91764084398457	6.76067443633531	1.06205751644915	7.37457876692336e-05	0.00219060928674656
Merged-chr4-131919467-2	chr4	131918967	131919967	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	562.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	4.27800172727834	4.1879675128938	4.32908332728829	3.85496494653124	3.7287006934488	3.71972473382335	-1.50274007031584	0.00317074439292663	0.0439312349641459
Merged-chr9-57433475-4	chr9	57432993	57433993	+	891.3833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	6243.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	4.51200971141255	4.49684944045761	4.44799326712555	4.64019183456953	4.66374713778018	4.64100765962633	0.393352516328347	0.340842080221734	0.730566001298075
Merged-chr9-114785934-1	chr9	114785434	114786434	+	562.0	f0_balb.idr	Intergenic	RMER5|LTR|ERV1	-3941.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.41628068494269	5.95493917655866	6.03027749369266	6.04368080117812	6.31572707112434	5.92991332769266	0.507565735998227	0.141109713481561	0.501878907432089
Merged-chr5-114773541-4	chr5	114773049	114774049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019834)	promoter-TSS (NM_019834)	-57.0	NM_001347400	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	8.64304612745714	8.33683188168929	8.07119356041021	8.17189699541671	7.93297267736556	7.99256927667127	-0.48003767678012	0.0509183031553372	0.287475245552266
Merged-chr4-95216646-2	chr4	95216146	95217146	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-164424.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.53578679170523	5.77607478534058	5.8209678491682	4.88950636230263	4.79157337552263	5.1690306072187	-1.5462174671106	2.08096186885872e-05	0.000754788482456836
Merged-chr3-27235459-2	chr3	27234959	27235959	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	52455.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.54041933167187	4.43245000433589	4.31899689235697	4.85868839462963	4.57858453646777	4.76491448300336	0.720700978655953	0.0929042471188156	0.406161322871923
Merged-chr16-36936491-2	chr16	36935991	36936991	+	871.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1508.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	7.5501841845978	7.58127294751076	7.50910520274134	7.92663245746378	7.93384381342102	7.70057890238374	0.453818955287683	0.0405665032605328	0.251064451060344
Merged-chr3-65441845-3	chr3	65441295	65442295	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-49242.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	5.00460087712251	4.74313106498477	4.61039896036076	4.76179520914219	4.81689034283525	4.19062021356555	-0.392682519960046	0.406943855356171	0.781142943537794
Merged-chr5-100860847-4	chr5	100860347	100861347	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	14618.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	3.01722802964558	3.41935403305708	3.04382377346449	3.15377185782034	3.1027392506443	3.17770340642697	-0.156482486492345	0.816152061612685	0.956616423430214
Merged-chr12-24709590-2	chr12	24709090	24710090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	1336.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.80948670844707	4.0041786612215	4.03847829431786	3.9395293936249	4.28178779302937	4.10704542270194	0.503390595648912	0.317755380911245	0.711531250433619
Merged-chr12-111071942-4	chr12	111071412	111072412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	32114.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	7.95932539690709	7.95890993366369	7.76905689302785	7.87963310441689	8.12938710848553	7.68020318840302	0.0227863945344213	0.923727449654138	0.982733195971172
Merged-chr5-21348261-2	chr5	21347761	21348761	+	742.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-24412.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	2.82836600820648	2.75446918033789	2.92643140705335	2.96623146782877	2.88514574277749	2.81544590386047	0.286969741594867	0.682837408666719	0.91523316791368
Merged-chr16-76332300-3	chr16	76331818	76332818	+	892.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	40731.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.94082173099158	3.89489162839124	3.88920512990302	4.66213554461391	4.17242608111655	4.11784270088326	1.22814379252899	0.0161689615661942	0.139853113721402
Merged-chr4-59837943-4	chr4	59837410	59838410	+	894.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	32260.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.94972654056774	5.0006039712266	5.38026468236545	5.0297334728646	4.74172107923118	5.14718225193998	-0.298940565447873	0.455618793255248	0.811069747178527
Merged-chr8-81345380-3	chr8	81344869	81345869	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	2807.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	3.59777972134031	3.84294152278878	3.45338871155853	2.98860222322962	3.21197817435756	3.16760993972131	-2.10733178945898	0.00197964341756239	0.0307374826438759
Merged-chr12-111447211-3	chr12	111446711	111447711	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	4550.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.99198719606039	4.8737492930681	5.00505671422054	5.25074618745895	4.92996064627071	5.1042272748289	0.30254039412428	0.421906473965853	0.790818027702079
Merged-chr9-102520408-4	chr9	102519900	102520900	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 3 of 10)	intron (NM_024291, intron 3 of 10)	14262.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	2.96183723078401	2.59108813495577	2.87218307351313	2.82974642469508	2.44654232962115	3.0606785485389	-0.0621399659672609	0.940485068758958	0.98684811092327
Merged-chr13-8996101-4	chr13	8995603	8996603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027000)	promoter-TSS (NM_027000)	-91.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	8.60471265418576	8.8559497451272	8.44198894514855	8.59971684128472	8.95922139127535	8.30778107936843	0.0116942326771796	0.964028583027814	0.991274561407747
Merged-chr2-154408064-4	chr2	154407575	154408575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009228)	promoter-TSS (NM_009228)	9.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	6.60748550842789	6.30083216021097	6.4589169687317	6.55859371163422	5.78321867956335	6.41011363546955	-0.28609664163838	0.395495606902821	0.772842311340033
Merged-chr11-94990918-4	chr11	94990416	94991416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172261)	promoter-TSS (NM_172261)	-296.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	5.78834377958677	5.69992751135895	5.8374956622012	6.13089458271628	5.84251805252669	6.32050423407618	0.575079362985018	0.06871131274011	0.342942254787785
Merged-chr16-50409568-4	chr16	50409065	50410065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	22824.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.78072416675732	5.5123480123766	5.15669205694408	5.23827342844346	5.51287271881448	4.95114999070842	-0.482550558586333	0.229172200197514	0.624625428681258
Merged-chr17-29765301-4	chr17	29764798	29765798	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48281.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	3.11449364319379	2.87992414349573	3.0451992831993	3.53555283105101	3.0051247985743	3.34695115389658	1.31115097490505	0.0621667160398574	0.323905329257636
Merged-chr8-69209003-4	chr8	69208523	69209523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013379)	promoter-TSS (NM_001013379)	-23.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	6.24780340007763	6.3694782815661	6.60254551368491	6.68622981331482	6.58869019523819	6.27483341875027	0.210419318639193	0.465992914086412	0.817283042094577
Merged-chr2-3657588-3	chr2	3657077	3658077	+	676.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-55881.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	6.64395268311446	6.21115871369742	6.71863597600771	6.59994578264833	6.79477669457069	6.61806550358148	0.225907925160759	0.434070839815901	0.79814689082248
Merged-chr3-62497279-1	chr3	62496779	62497779	+	614.0	f0_c57.idr	intron (NM_028136, intron 4 of 24)	MER2|DNA|TcMar-Tigger	9709.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	2.84374259400216	2.8668127396938	2.95746829536204	2.92635186347483	3.03744431058907	3.20011813406906	0.793495994100679	0.246063213881029	0.643182480464067
Merged-chr11-8577005-1	chr11	8576505	8577505	+	559.0	f1_balb.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	87530.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.82353825517847	4.8745447140727	4.83220941473825	4.50545796869754	4.3258004479555	4.36121814986683	-1.08269880522006	0.0093980240838518	0.0963636214379717
Merged-chr4-128841245-2	chr4	128840745	128841745	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35133.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.90986881427732	3.41378193132536	3.91855742833767	3.62362897061324	3.87214206679401	4.03253318893031	0.268748094386569	0.646440813490254	0.901004157672608
Merged-chr13-62785807-7	chr13	62785298	62786298	+	996.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	10.0	NM_001256065	380850.0	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	4.25260063816985	4.28956547798272	4.48261794273687	4.47976333710161	4.44751728036672	3.86639978840564	-0.098637235090063	0.847187219045889	0.964181639106262
Merged-chr9-118688551-3	chr9	118688010	118689010	+	738.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-23182.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.28056371907483	3.32170421617994	3.33088294303203	3.16083795577574	2.76421126531142	3.45476204108294	-0.631942801159379	0.389934394229407	0.769401696657453
Merged-chr10-15171309-3	chr10	15170787	15171787	+	750.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	410998.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	3.3136273250373	3.19900246109928	3.53680015095004	3.07698363245529	2.99770404134968	3.23809892773844	-1.05919681710317	0.1056487111239	0.433764288115161
Merged-chr5-124028151-3	chr5	124027680	124028680	+	831.6777950000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	URR1B|DNA|hAT-Charlie	4080.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.21736477652689	5.20507258855145	5.32364412145622	6.21278912394878	5.82390043051767	5.8888289965673	1.3815290900235	3.28108109158596e-05	0.00111161317373243
Merged-chr14-120363443-4	chr14	120362956	120363956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	57004.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.47350697764791	6.28845537744307	6.39949980893053	6.40281038634501	6.33684362665802	6.13186089800991	-0.141183704681069	0.611985365385674	0.886473391147181
Merged-chr8-26885530-4	chr8	26885033	26886033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61110.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.87012646217278	5.9541943222974	5.85884422915571	5.63307101039867	5.56648608055843	5.48524093792578	-0.602902850630196	0.0513442103974251	0.288860653059428
Merged-chr11-32268134-1	chr11	32267634	32268634	+	643.0	f0_balb.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	-427.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	5.54694159186279	5.28719322642556	5.33792613357599	5.39650621765377	5.31831499933211	5.43179581436016	-0.0391581163174336	0.908576746250347	0.979266532095756
Merged-chr10-62505543-3	chr10	62505102	62506102	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	2155.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.20014676222522	7.17998041444363	7.23821839659785	6.83851616398653	7.06632153921907	6.86507683601563	-0.409530698044632	0.0919044283324319	0.403789004049295
Merged-chr15-41831557-3	chr15	41831037	41832037	+	904.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	579.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.19509999013731	6.60356758034699	6.2907416828883	6.3244479934781	6.94553817381846	6.31000065225844	0.317270616674058	0.335446158941464	0.725581760882556
Merged-chr10-6712474-4	chr10	6711973	6712973	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46120.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	2.97148325087753	2.9510988602147	3.01160125966945	2.92311541274478	3.1711368753622	2.76893148214118	-0.0143435333016214	0.984087589825555	0.996464361754829
Merged-chr1-185329291-4	chr1	185328764	185329764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198653, exon 1 of 23)	exon (NM_198653, exon 1 of 23)	137.0	NM_198653	381314.0	Mm.275841	NM_198653	ENSMUSG00000026618	Iars2	2010002H18Rik|C79125	isoleucine-tRNA synthetase 2, mitochondrial	protein-coding	8.19763864046577	8.53158440291758	8.16942222683399	7.97775005678547	7.95174890221361	7.48713778937505	-0.679631594843754	0.00780777732742285	0.0846034035499675
Merged-chr9-40991113-3	chr9	40990611	40991611	+	639.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_019465, intron 3 of 9)	intron (NM_019465, intron 3 of 9)	13517.0	NM_019465	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	3.0122178290103	3.25224690285138	3.30861452304852	3.14359851946266	3.17890106731251	3.26943381702524	0.00912804400440923	0.988664660881856	0.997426973334006
Merged-chr11-21371304-4	chr11	21370795	21371795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-28.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	7.03088556561616	6.71304087913797	7.00312080359356	7.04224636243897	6.83502004190676	6.82102586755624	-0.0241966478199869	0.926061267024034	0.983305773102619
Merged-chr2-58166961-4	chr2	58166468	58167468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	2994.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	2.93740180356567	3.05746066079896	2.91253718123621	2.68576083671498	2.74880572978109	2.73569249732713	-1.28821119309888	0.0776652552352052	0.367807089220885
Merged-chr1-94581597-2	chr1	94581097	94582097	+	969.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-215845.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	5.39417916669489	5.72844561162759	5.64878540479636	5.11944737290502	5.23815188745243	5.28002985237514	-0.750515512452655	0.0306000978579576	0.211558942778361
Merged-chr2-160176314-4	chr2	160175871	160176871	+	823.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151123.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.6778353970832	4.60129521791473	5.05098422310018	4.58676291851242	4.52026050366177	5.14413766470683	-0.029654755377064	0.9481172936535	0.988063520994946
Merged-chr11-70647107-4	chr11	70646568	70647568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027445)	promoter-TSS (NM_027445)	-29.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	6.49718703836595	6.49063815208824	6.67968286895857	6.6724696487608	6.45767106057669	6.20196363353997	-0.140166775797767	0.621225253372099	0.890625390716465
Merged-chr8-117345327-4	chr8	117344777	117345777	+	757.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3893.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.24303516733504	5.03340281378317	5.02326772771176	4.55929341972204	4.30219243518789	4.45380566891582	-1.56723326630941	0.000145493111249259	0.00387398105626507
Merged-chr4-54669272-2	chr4	54668771	54669771	+	684.5	f0_balb.idr|f1_balb.idr	Intergenic	L2c|LINE|L2	-278674.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.97990685107869	3.39227273034714	3.55500769173495	2.82940792127127	2.67376837642943	3.27009979482201	-1.69090219578656	0.0350930496538318	0.2298837125257
Merged-chr6-113017674-3	chr6	113017165	113018165	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28637.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	2.76523304459631	2.62963584744246	2.67038542879972	2.71039882359848	2.63726838838129	2.80512076526917	0.134653120104609	0.855357595276715	1
Merged-chr3-88646647-2	chr3	88646147	88647147	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 21 of 21)	intron (NM_001198913, intron 21 of 21)	6495.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	3.2349730976947	3.34587624650633	3.74598037362055	3.14743980117197	3.14483909238111	3.31350229170144	-1.00435688953368	0.122093424258021	0.467388187599441
Merged-chr7-80828636-4	chr7	80828129	80829129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25298.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.58037722357371	5.16177486864826	5.24155416921099	4.93712151586668	4.73717649394552	4.92395419025984	-1.01668724046226	0.00811020090599719	0.0869070955552111
Merged-chr6-53995724-4	chr6	53995234	53996234	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	MLT1H2|LTR|ERVL-MaLR	17043.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	3.92408433923657	4.01842013940132	4.37302044467615	4.56907623444289	4.55250301510882	4.48218858316821	1.15350821396785	0.0141100050147399	0.127490421998706
Merged-chr17-35165807-3	chr17	35165307	35166307	+	958.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-930.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	7.65480497883645	7.57339292165399	7.42901809029103	7.50134795914328	7.87952996036473	7.47541013726403	0.11880817130349	0.630945907445605	0.894950326243773
Merged-chr13-107021866-5	chr13	107021284	107022284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015471)	promoter-TSS (NR_015471)	330.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	5.06616351345474	4.7408499488401	5.03566480883946	5.00888675210809	4.77618304053266	5.13250705661693	0.0409269301608504	0.917923938220393	0.981747877135909
Merged-chr5-143470964-4	chr5	143470447	143471447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	6454.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.92601942888206	6.77858222424878	6.61534862707089	6.68285879251755	6.77383737715888	6.65751543786525	-0.121239719566935	0.639798524225701	0.898199312621371
Merged-chr9-53635023-3	chr9	53634543	53635543	+	872.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027807, exon 8 of 19)	exon (NM_027807, exon 8 of 19)	-24693.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	6.12796481668832	6.54191005762018	6.35924664135885	6.20925871443812	6.80565365111868	6.47496015879587	0.280786172222959	0.372590530280065	0.756430782227054
Merged-chr10-69223423-4	chr10	69222978	69223978	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	10284.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.94617108963071	4.73440535886117	4.64851505692568	4.93038839521868	4.63067705997399	5.015440110454	0.158393347362539	0.701154993657691	0.921164588055017
Merged-chr16-4625456-2	chr16	4624956	4625956	+	770.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-510.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	6.88795719691942	6.94935901363787	7.01574739876687	7.02714902631608	7.41491570046088	6.99221370102069	0.335184076570017	0.199079498151072	0.587481591514486
Merged-chr6-121244607-5	chr6	121244094	121245094	+	615.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	3.31726424405889	3.34715497632502	3.38540115857025	3.5884702267748	3.49537434233569	3.45710195561568	0.634996450314562	0.275647841815873	0.673205330842828
Merged-chr4-54794065-1	chr4	54793565	54794565	+	628.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-153880.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.61750461420752	2.54258903056308	2.72795272958155	2.33759598165384	2.49300517048326	2.61978493846322	-0.841230091241032	0.298025888542269	1
Merged-chr16-56016566-2	chr16	56016066	56017066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024622, exon 5 of 5)	3' UTR (NM_001024622, exon 5 of 5)	13151.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	4.07994314733971	4.23867888058822	4.53841451628046	4.33324743437145	4.48292802513446	4.64170775988484	0.515988145208586	0.268022250132573	0.665202988397994
Merged-chr2-122743114-4	chr2	122742598	122743598	+	933.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	4593.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	5.19321126162321	4.88993380611542	4.65236004675789	5.16012641250859	5.05304016714977	4.84795407529308	0.19149175506366	0.64003125472029	0.89826778327701
Merged-chr19-5295545-4	chr19	5295047	5296047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030109)	promoter-TSS (NM_030109)	-92.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	6.45545819527371	6.91123330487725	6.35127178133517	6.35018677614471	6.32225267923571	6.28979899310033	-0.46243868741093	0.120779211009419	0.464856905737333
Merged-chr9-85587298-4	chr9	85586839	85587839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161995.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	5.56108255869106	5.38375108719025	5.72139871174825	5.35115100502693	5.57007125960864	5.68224002448054	-0.0295993763314711	0.930517742160988	0.984578929459061
Merged-chr12-82401690-4	chr12	82401198	82402198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 12 of 23)	intron (NM_001167983, intron 12 of 23)	90349.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.46970587910198	4.38160226512486	4.25825253920629	4.59639150734882	4.6608398718063	4.59389878301674	0.597975956303209	0.162970167479234	0.536430305613833
Merged-chr3-20018226-4	chr3	20017734	20018734	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 8 of 16)	MTD|LTR|ERVL-MaLR	17076.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.44893415077396	6.32823309397053	6.22182564985021	6.38820219033656	6.42353534037925	6.17429843894674	-0.000448870859949926	0.998718028383483	0.999767255399497
Merged-chr13-12459839-6	chr13	12459313	12460313	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291055)	promoter-TSS (NM_001291055)	-497.0	NM_001291055	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	5.19257739230663	4.987208076411	4.95914260341846	5.17519128786442	5.04883803896567	5.0605639617479	0.084539782570826	0.818488996031506	0.956975045804917
Merged-chr2-25584871-2	chr2	25584371	25585371	+	619.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024616, exon 13 of 15)	exon (NM_001024616, exon 13 of 15)	-4772.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	2.44054493780056	2.59128638450189	2.68645242670225	2.35076467773837	2.39620688251072	2.57763361753389	-0.80439754719644	0.322723801427549	1
Merged-chr7-35121083-11	chr7	35120535	35121535	+	899.420227	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001287523, exon 1 of 1)	3' UTR (NM_001287523, exon 1 of 1)	1742.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	6.21995140817334	6.14636092255341	6.18708905044072	6.27827258600152	6.14323087037658	6.24728684728519	0.0606032698068084	0.826914084469976	0.959278302444461
Merged-chr1-45924790-4	chr1	45924325	45925325	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 1 of 7)	intron (NM_016917, intron 1 of 7)	769.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.00829330419845	7.24868405486563	7.01826261057211	7.40363244321071	7.67103401368139	6.6427846665031	0.332060932874222	0.306920025045999	0.703091920100449
Merged-chr16-4909335-4	chr16	4908825	4909825	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	23225.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	5.40215200444288	5.66771435282025	5.73932780535934	5.81771828275792	5.86508763053578	5.89842810806917	0.464570001986255	0.143134966963187	0.50502227934974
Merged-chr11-95411732-4	chr11	95411258	95412258	+	805.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2325.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	4.6912087625465	4.46804666690055	4.85355650960538	5.38215956763867	5.46708686354435	5.29714499345048	1.55071646153589	4.89905857370262e-05	0.00155410166145882
Merged-chr9-59292306-3	chr9	59291820	59292820	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	748.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	7.85679762553603	8.20070638673598	7.96863403224867	7.97374985744913	8.30045435696229	7.84021300811099	0.0590891690390316	0.810992640843729	0.955096593239846
Merged-chr6-83632061-4	chr6	83631565	83632565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24051.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.46830490833951	7.35905098853749	7.57510360199844	7.18705800598818	7.53219522903911	7.16769449278473	-0.221323629843129	0.374727381496067	0.758118627242714
Merged-chr9-88956928-4	chr9	88956443	88957443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009742)	promoter-TSS (NM_009742)	23.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	6.22696163050762	5.84053924817638	5.83575390747602	6.47069423212555	6.40119851369005	6.16323415528428	0.62014541532595	0.0440392256126599	0.264006908125231
Merged-chr2-166967143-3	chr2	166966632	166967632	+	959.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-2415.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	4.97245962002189	4.76019998509354	4.73939598632543	5.0183647760176	5.00674813942933	4.88473427239299	0.312992234984546	0.417403441406114	0.787970785225811
Merged-chr7-19225157-3	chr7	19224653	19225653	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175668)	TTS (NM_175668)	-3236.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	3.79470836237809	3.89868488040714	4.01347555962002	3.36270427139997	3.10256831455638	3.54262105113351	-2.13809483976665	0.000699087774000407	0.0136580642167236
Merged-chr17-34895222-4	chr17	34894629	34895629	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198886, intron 1 of 1)	CpG	570.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	5.41534466863642	4.88384606553987	5.43025707411635	5.14821342580409	4.95205468033429	5.25851072615973	-0.29443305693255	0.457101025745093	0.812004739475898
Merged-chr2-157135227-4	chr2	157134728	157135728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018851)	promoter-TSS (NM_018851)	-6.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	6.95508584288747	6.91059051810201	7.28014627099148	7.25670590957999	7.56031666135456	7.32647385894104	0.512876611397832	0.04552515742961	0.269392968439167
Merged-chr11-29693819-4	chr11	29693315	29694315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194051)	promoter-TSS (NM_194051)	41.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	7.6641212473662	7.28566471986563	7.81474590187683	7.72748059642897	7.16379381078435	7.69012123474893	-0.0806770300854116	0.777081351942479	0.945008697968925
Merged-chr11-78178626-4	chr11	78178144	78179144	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-14.0	NM_001291236	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	5.42705628853545	5.65947327945521	5.66459808051522	5.52304357899193	5.43351509394713	5.4778582858606	-0.205217492108925	0.53195488274703	0.851867550687707
Merged-chr3-89715069-3	chr3	89714571	89715571	+	932.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	49.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	4.35686782595525	4.66470113506479	4.01504466115464	4.75642619882448	4.34003811113831	4.08895701850859	0.122432523963868	0.819165426419202	0.957209935971094
Merged-chr16-11140805-4	chr16	11140308	11141308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145931, exon 21 of 23)	exon (NM_145931, exon 21 of 23)	-6276.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	5.93065948953214	5.80519237945373	5.76973548857536	5.75653580782048	5.71545613905772	6.10663771097381	0.0335304164958111	0.91574514235614	0.981200822249461
Merged-chr1-59316182-4	chr1	59315668	59316668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59262.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	4.70583694399059	4.80526625130226	4.68411694144448	4.12490628541332	4.32855490052086	4.32947146322436	-1.18421850367351	0.00687249435728373	0.0770786508263735
Merged-chr1-54913629-2	chr1	54913129	54914129	+	762.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	12758.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.89554362191561	5.92934459251442	5.74602490227434	5.94025942346453	6.02029727596757	5.91038232197144	0.168068355991234	0.572303666013199	0.869807909725036
Merged-chr11-94321652-4	chr11	94321161	94322161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361574, intron 1 of 9)	CpG	302.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	8.25048626563881	8.56331243690355	8.03474474030723	8.32289907952429	8.38674472261032	8.14853231387136	-0.0210776281654583	0.930187190572386	0.984448052988905
Merged-chr13-43784496-2	chr13	43783996	43784996	+	686.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289915)	promoter-TSS (NM_001289915)	-616.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	6.70672301940357	6.43651569740314	6.10713387318148	6.17561519455819	6.19958044451637	5.9758715806526	-0.536164611312776	0.0831138648058469	0.381505377849687
Merged-chr10-88732482-3	chr10	88731973	88732973	+	768.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 1 of 5)	intron (NM_025859, intron 1 of 5)	1059.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	4.59381195564006	4.4648407538336	4.70504662837856	4.38488180889628	4.3030755324289	4.06643424844162	-0.820323597421332	0.0729001654743583	0.354750392934699
Merged-chr7-65650829-4	chr7	65650329	65651329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 3 of 18)	URR1B|DNA|hAT-Charlie	5931.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	4.81351132957786	4.82616527903708	4.93632458658433	5.56091208275376	5.3115195598273	5.14654623780794	1.04783732878995	0.00488444168621301	0.0602573485915375
Merged-chr7-97581007-4	chr7	97580518	97581518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	1122.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	6.08130264222657	6.20538969555863	6.64092009196902	6.54700217359997	6.5130817077787	6.4310477764852	0.296184853466016	0.319551597507983	0.713537175972635
Merged-chr1-70856098-4	chr1	70855602	70856602	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	130387.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	3.63784822001567	3.86558853238818	3.76870497611116	3.65693853130781	3.63495110805645	3.78758339842313	-0.240585505258572	0.655813041212658	0.904417939008229
Merged-chr14-7997381-4	chr14	7996881	7997881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	3.3507986571827	3.1853630901407	3.20827014797016	3.16735046119841	3.32783903858719	3.44531267764984	0.257648014735329	0.679887037351153	0.914056754309378
Merged-chr14-40937777-3	chr14	40937287	40938287	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10422.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.4226668316067	5.40195824210437	5.25511869701649	5.2989005624066	5.09688346664563	5.63392165952289	-0.0384388202006409	0.916302153569335	0.981243905880233
Merged-chr9-109059241-4	chr9	109058729	109059729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012236)	promoter-TSS (NM_001012236)	22.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	7.93682607808125	7.66859033787427	7.62733713191312	7.93089560656862	8.10323798576843	7.82739975212484	0.297542139844489	0.202350315513128	0.592169839736095
Merged-chr1-154788283-3	chr1	154787792	154788792	+	672.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62372.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	3.20599264417282	3.06303134063313	3.4353844314477	3.19909527623644	2.85716775558597	3.18216874830293	-0.662234229689042	0.335051131745921	0.725339338581532
Merged-chr6-148831456-4	chr6	148830881	148831881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081113)	promoter-TSS (NM_001081113)	86.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	4.73369468880396	4.51835207117492	4.59969325694961	4.80835012127933	4.67255571670964	4.30230530819489	0.000496557097046444	0.999102046145131	0.999864283693757
Merged-chr7-43668829-3	chr7	43668316	43669316	+	955.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3215.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	7.17595148805646	7.05197108421774	6.86402592743587	7.58582841128738	7.65722748795981	7.49366365852822	0.798494634876027	0.000867804529013221	0.0161425427112176
Merged-chr7-42490928-2	chr7	42490428	42491428	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 2 of 6)	RLTR14|LTR|ERV1	14825.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	3.80927881478435	3.76679330293874	3.79556146504865	3.95522535160339	4.06860222366312	4.01454147289862	0.703632007729475	0.162542530642243	0.535984273380581
Merged-chr1-194978622-2	chr1	194978122	194979122	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	3.05298642433683	3.07760665369166	3.14661426373308	2.98899510095931	2.91326331761638	2.79137485018382	-0.882300987994674	0.202671596232363	0.59252027125208
Merged-chr12-35392369-4	chr12	35391873	35392873	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142616.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	3.24960236137565	3.38910045037579	3.1286294256939	3.27373169003327	3.17899704032998	3.31822319892866	-0.0476527125481212	0.939630626822623	0.986720663284284
Merged-chr3-142596983-3	chr3	142596470	142597470	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	Lx9|LINE|L1	2123.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	3.96331377886302	4.03263203548319	4.02026439276368	4.18062117326434	4.3926295672092	4.27725495615868	0.805095615489211	0.0886377364731289	0.395207843556752
Merged-chr3-144718015-4	chr3	144717512	144718512	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	2323.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	7.50429371888748	7.84276300157704	7.43068147470117	8.10122060233314	8.49218878707846	7.74045991655632	0.778221114744075	0.00596522073477636	0.0695076441533779
Merged-chr10-71348505-4	chr10	71347995	71348995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	CpG	732.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	7.6294319644529	7.7190346858966	7.77189150126131	7.51121512311788	7.52459502282401	7.42514484958343	-0.31360451354532	0.154668004469081	0.52390421792532
Merged-chr6-83349453-4	chr6	83348946	83349946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175277)	promoter-TSS (NM_175277)	-38.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	6.01624155808212	5.7453364542326	5.80070138062174	5.65816863366372	5.63901089697552	5.37255882384202	-0.527441278893446	0.106103446964827	0.434788120873262
Merged-chr15-13435408-3	chr15	13434908	13435908	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261733.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.04854060405937	3.4742879424442	3.19913274346463	2.96006100247045	3.22475582367495	3.2709970682611	-0.404494461295255	0.553036627676919	0.862033489111331
Merged-chr1-93125445-4	chr1	93124952	93125952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9788.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	4.32590156935003	4.03652504421138	4.00655383638452	3.83548354168081	3.77927261308219	3.92630888626591	-0.886293049699371	0.0823301185248712	0.379332363801987
Merged-chr4-127242940-4	chr4	127242435	127243435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-849.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	3.67681399655387	3.55980109769696	3.53565988938972	3.75145997285554	3.73907404788843	3.96344446286575	0.740216802294866	0.175769619382013	0.555778951622549
Merged-chr14-18331237-4	chr14	18330742	18331742	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 1 of 5)	CpG	602.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	6.32520812414622	5.8462428716436	6.0958290453746	6.29696004648327	5.53021438791747	6.17738780964603	-0.113390301487263	0.755478049794465	0.939315847504439
Merged-chr7-80032261-2	chr7	80031761	80032761	+	802.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6033.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.36009098009424	6.21181676315392	6.24151113644976	6.6256007935962	6.40213522007731	6.41993221655181	0.347515799892675	0.204925865304968	0.595601362265388
Merged-chr19-53404805-4	chr19	53404326	53405326	+	998.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14192.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.8580318052469	4.63197792654809	4.13284718178776	4.08304822933597	4.05457089554022	4.10037002852079	-1.347331477632	0.00700312482757312	0.0781373221878905
Merged-chr2-102942243-4	chr2	102941722	102942722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40557.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.69493005246951	7.94314609268355	7.50751005271383	7.63059438288828	7.88387475722159	7.512377133754	-0.060693851259393	0.809549385332984	0.954749848816598
Merged-chr9-13847800-3	chr9	13847283	13848283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20067.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	3.39213748717734	3.46342124286739	3.61408017861424	3.2956594618956	3.42941825072479	3.52951264806386	-0.258366755344066	0.661301961337991	0.906323416714897
Merged-chr7-99146252-4	chr7	99145744	99146744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5100.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.38655425073851	7.40852310941402	7.55324511849609	7.19645669962042	7.67584835469061	7.66482980272883	0.123191372457092	0.628425494243979	0.89369433716418
Merged-chr1-133418329-4	chr1	133417817	133418817	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	5895.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	3.60372255099033	3.69872843205878	3.86131960701982	3.63993207193896	3.50626193672859	3.2760413737584	-0.818378631240261	0.169975949779604	0.547258892944641
Merged-chr1-43934768-3	chr1	43934249	43935249	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	755.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	8.40790475794688	9.14914131918963	8.60825133488212	8.48131600488722	8.90733575282461	8.69306508948748	-0.0810252666385045	0.767507878338312	0.942617496111852
Merged-chr13-23702891-4	chr13	23702387	23703387	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-4429.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	5.78727828890055	5.98068717607819	6.30025764271253	6.51575382758281	6.77168830896208	6.88505985385579	1.15346820496824	0.00012904872056051	0.00351831125176897
Merged-chr18-39804498-2	chr18	39803998	39804998	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	31001.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.11068745849912	3.3511808210919	3.17041948061901	3.13113113548714	3.22988447313176	3.40781819900408	0.161321873702975	0.801022087936601	0.95274755793001
Merged-chr19-4114535-2	chr19	4114035	4115035	+	799.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_075078)	TTS (NR_075078)	7040.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	6.04441906022636	5.82670725564198	5.98597010000779	5.63498519727233	5.84844686786245	5.78266706976255	-0.341582479335838	0.266903900532552	0.664374762344038
Merged-chr12-54683390-2	chr12	54682890	54683890	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025456, intron 4 of 5)	intron (NM_025456, intron 4 of 5)	12504.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	2.86424955817211	3.00436247816652	3.15454633990712	2.94841809504294	2.86119230619256	3.17053654056732	-0.0699156636243354	0.919587038427759	0.982040931170308
Merged-chr5-99245562-5	chr5	99245047	99246047	+	808.286682	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	7380.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.84391167296137	6.74980564196832	6.88657821256134	6.80867901692723	6.99092640861155	6.79748877391583	0.0781791435945275	0.754792887274812	0.939123251455866
Merged-chr14-62762178-2	chr14	62761681	62762681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 1 of 6)	intron (NR_045503, intron 1 of 6)	-1069.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	7.4475649187666	7.5359970860217	7.42391084840986	7.54701143467021	7.82080244910261	7.45970964419996	0.226060752085679	0.340250776063398	0.729943448014314
Merged-chr13-5604366-4	chr13	5603842	5604842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253750.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.38537802285434	6.44995240505444	6.34922997944569	5.65460466383395	6.05120542462266	6.42681203284299	-0.539604804518074	0.0985151919346217	0.418490297463602
Merged-chr2-90538731-4	chr2	90538210	90539210	+	836.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	41937.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.34647401108904	5.05472292665223	5.02810111567204	4.868589806656	4.75399156411566	5.34566101182677	-0.325645850049723	0.426258863811987	0.793775990271191
Merged-chr14-16245480-1	chr14	16244980	16245980	+	1000.0	f1_balb.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-2149.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	3.48716423352281	3.79507725199273	3.57116094923201	3.95147467628261	3.78901066526068	4.46151112196873	1.43775217607505	0.0147714686303594	0.131258475202365
Merged-chr10-128372305-2	chr10	128371805	128372805	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2268.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	5.54523842376073	5.00829684063028	5.43848311073587	5.44455718282784	5.56007827707552	5.44261419206794	0.269212662359427	0.4604743614441	0.814520074002194
Merged-chr19-8798589-4	chr19	8798095	8799095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-38.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	7.15306563243876	7.32520028023311	6.9905610712602	7.06319291592163	7.48502514670844	7.19292638888054	0.14437170874201	0.582360663454526	0.873702353685426
Merged-chr18-12738557-4	chr18	12738107	12739107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2748.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	6.13052643152775	6.34639937814155	6.49812967701123	6.83577969036733	6.94290063836894	6.98039518622711	0.945673203629475	0.000408782984871112	0.00893929424577017
Merged-chr1-191083962-1	chr1	191083462	191084462	+	540.0	f1_balb.idr	3' UTR (NM_198654, exon 6 of 6)	3' UTR (NM_198654, exon 6 of 6)	-14452.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	3.61437475619362	3.49770965019544	3.52625415163975	3.81145774615101	3.74998374466434	3.95541840588177	0.975640348097341	0.074689181439602	0.359719041144728
Merged-chr4-3682109-2	chr4	3681609	3682609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3988.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.215144863664	7.215807638722	7.28795268770725	7.23871268518964	7.68670753598206	7.3564970412131	0.313608978669782	0.210871259500816	0.603161969426302
Merged-chr19-59075736-4	chr19	59075236	59076236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175172, exon 1 of 15)	5' UTR (NM_175172, exon 1 of 15)	333.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	6.59665793136955	6.6108194937914	6.85234659536281	6.42538124894696	6.41159475975657	6.57592524718262	-0.34688074543993	0.19310941643873	0.580267363879138
Merged-chr2-102917616-4	chr2	102917106	102918106	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15941.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.96531972670696	3.68995666719779	4.30184524411993	3.65925207450077	3.65893071940543	4.20779949724319	-0.429134852905971	0.464698680795017	0.816459397744841
Merged-chr14-8108359-3	chr14	8107887	8108887	+	915.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	10176.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.42178920280459	4.486483653451	4.73314518100664	4.68706157497119	4.34120220616137	4.43889761153573	-0.123813207384636	0.780053952380767	0.945949149660645
Merged-chr11-82570871-4	chr11	82570379	82571379	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62474.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	7.57583779036488	7.58865069980967	7.64465486388945	7.89011219373456	8.13358107842884	7.71957315524261	0.477557397083355	0.0401296796541721	0.249382595088108
Merged-chr11-98936643-5	chr11	98936088	98937088	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.07709011400801	3.61928206808524	4.27654801055916	3.76431334611235	3.71171228038033	3.85225780725187	-0.737471933537943	0.189905203496195	0.576008171636766
Merged-chr1-75317736-4	chr1	75317232	75318232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	-95.0	NM_001110831	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	5.77500162075567	6.30074008031942	6.23151900816543	6.29959584718412	6.20632549929629	6.18944841955526	0.188718289989411	0.543485452522278	0.857551302506722
Merged-chr18-10646687-4	chr18	10646150	10647150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134130, intron 8 of 8)	intron (NM_134130, intron 8 of 8)	28854.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	3.42622369086998	3.3389683833735	3.43366749238308	3.35716247636449	3.31728806704463	3.65848912621885	0.173425867673893	0.77242227707479	0.943716660313239
Merged-chr6-71458520-2	chr6	71458020	71459020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-17883.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.637829858379	5.13822251338002	5.17354149726721	5.32664132406707	5.57963354044302	5.09440228945411	0.0322403635799344	0.934301802296094	0.985707838096286
Merged-chr12-8682204-4	chr12	8681703	8682703	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030723, intron 1 of 20)	MTC|LTR|ERVL-MaLR	7522.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	3.52145832660271	3.33001712369449	3.36676128370849	3.34744039382539	3.2375269387806	3.64531729568913	0.00936425497683751	0.987874924138471	0.997247187631499
Merged-chr17-78736700-4	chr17	78736189	78737189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011500)	promoter-TSS (NM_011500)	-129.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	6.79703234106211	6.89732279846895	7.05256537273256	6.89324997968267	6.99156710769925	6.80493496566429	-0.0140054093220678	0.955519933689553	0.989763164889919
Merged-chr7-25267508-4	chr7	25267017	25268017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-182.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	8.30271456959235	8.2089651669162	7.55210095871401	7.91106659430492	8.20792343288456	7.72807230698885	-0.141946833870074	0.622173297734099	0.890985057102074
Merged-chr16-49818136-1	chr16	49817636	49818636	+	715.0	f0_balb.idr	Intergenic	MER21B|LTR|ERVL	-37518.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.49239189628228	5.58131126544337	5.88072945532761	5.47643522926945	5.74442386145119	5.89598304663419	0.11268729113055	0.739648884414726	0.934245371298156
Merged-chr5-115268456-3	chr5	115267950	115268950	+	870.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	4445.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	4.21977477591812	4.0226422497645	4.61147767244409	4.44215112690621	4.21379090487617	4.44417224657044	0.185536919674718	0.703966423699982	0.922296896558746
Merged-chr14-31405906-4	chr14	31405392	31406392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11785.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.47978512809629	6.4004004595389	5.78067051572976	6.13037270443272	6.07023631351276	6.07316542921179	-0.301982135224759	0.353702731055776	0.740929143625235
Merged-chr1-138965211-3	chr1	138964705	138965705	+	957.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	1496.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	4.59103212454767	4.62417971427425	4.21797854946679	4.75384171242028	4.99543736620607	4.85929294531319	0.871357052604868	0.045806781444507	0.270414713002574
Merged-chr16-4894769-3	chr16	4894267	4895267	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8667.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	6.25288609929673	6.22595333837545	6.49142042270271	5.92226338382448	5.80482413644572	6.00814188351673	-0.708057521460816	0.0156473380296764	0.136719909983546
Merged-chr17-43031135-1	chr17	43030635	43031635	+	672.0	f1_balb.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	14580.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.19430543580671	4.98902576820321	5.0691983261815	4.70125309570739	4.92582700683055	5.22889306293684	-0.271366118314628	0.491517968364744	0.830572128647886
Merged-chr10-80146544-2	chr10	80146044	80147044	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025313)	TTS (NM_025313)	-1728.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	3.4394409076845	3.37923631478231	3.50163882450264	3.19500652971825	3.66394304215372	3.46395664747588	0.0874572596115816	0.887527474385323	0.973836995667151
Merged-chr3-59228909-4	chr3	59228413	59229413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-18031.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.59678284488823	6.51910373075417	6.51675494632849	6.52890134601669	6.52902825541131	6.78446760143341	0.104631076881336	0.692052357918077	0.918541547639936
Merged-chr8-75104501-4	chr8	75103936	75104936	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-5073.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.25750322097997	3.51704411219134	4.26735834464766	3.93750592058024	3.72790139359603	4.48937173148491	0.0870088482485592	0.889514595206025	0.974240173857916
Merged-chr2-128780447-3	chr2	128779950	128780950	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-37853.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.07918685949125	4.02473026575079	4.58223726375151	3.95589422306129	4.05084784546434	4.34196997286358	-0.339332837137679	0.513237568263997	0.842416687973146
Merged-chr5-140506556-2	chr5	140506056	140507056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	947.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	3.84509345061533	3.76797141956939	3.70448072380188	3.63317703882062	3.44425769502844	3.44065172595856	-0.934521021753868	0.0967082919398538	0.414629899193181
Merged-chr5-129016629-1	chr5	129016129	129017129	+	598.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3527.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	2.63985144825244	2.59675829992492	2.84282603634707	2.50057539047854	2.48868405974766	2.67834865527792	-0.791286357647059	0.308951060172353	1
Merged-chr12-40224623-2	chr12	40224123	40225123	+	809.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_045157, intron 1 of 2)	intron (NR_045157, intron 1 of 2)	1259.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	4.10809670387396	3.55301654024979	3.55704859962501	3.88055111953835	3.58800398838137	3.25011584047784	-0.589573564043505	0.60748216229539	0.884581207370863
Merged-chr3-95662511-4	chr3	95662007	95663007	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3786.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.35126159101355	6.90690717652559	6.81041683160817	7.48103040969792	7.51822097245708	7.15603304561318	0.517787299720872	0.0639000163553594	0.329388710252555
Merged-chr4-33030499-4	chr4	33029989	33030989	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019586)	promoter-TSS (NM_019586)	834.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	6.30223012454887	6.42640538226431	6.21675911904086	6.17218237767948	6.30016420026295	5.93099204606991	-0.278174238057275	0.34117958890574	0.730686899066382
Merged-chr2-170344901-2	chr2	170344401	170345401	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11460.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.34550790696071	6.2652015341383	6.2678717912901	6.5555681530346	6.25497623781987	6.08925048378844	0.0429782793483389	0.882604566512813	0.97322373493158
Merged-chr15-3979579-4	chr15	3979066	3980066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134099)	promoter-TSS (NM_134099)	7.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	8.05945485019453	7.96284574791616	7.70970091540526	7.96105388999172	7.73705945840794	7.81862534127055	-0.119974253510805	0.602519037823182	0.882349532183277
Merged-chr1-82799160-4	chr1	82798667	82799667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-30711.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	6.27912406407087	6.21630201801437	6.08074918426389	6.09580105914516	6.23971363599878	6.32789883830255	0.0348319993308939	0.902110878649172	0.977397387787646
Merged-chr6-124990744-3	chr6	124990265	124991265	+	571.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-5955.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	4.34940048702688	4.44220026986579	4.53496845135846	4.43975969284402	3.95792166463754	4.21333270036859	-0.602607052258796	0.207321435293625	0.598105800717372
Merged-chr13-51964397-6	chr13	51963896	51964896	+	781.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117721.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.58282640738804	4.00578404925599	4.01492648258821	4.09334503679868	4.29312299228021	4.27930808812283	-0.0381226396629081	0.941136992261689	0.986908937621943
Merged-chr4-130800269-4	chr4	130799777	130800777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	7740.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.48796263497059	8.1678546816461	8.11504497159547	8.30686631655361	8.48619389808831	8.03161145559192	0.0329040969676113	0.892642942360088	0.975146620821922
Merged-chr5-30040036-4	chr5	30039522	30040522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26908.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.85479979434198	4.49114773426319	4.44506217543448	4.40096673355353	4.31194121480503	4.4692050877834	-0.567543608398516	0.203184368173648	0.593047970473348
Merged-chr8-104115170-3	chr8	104114671	104115671	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	MTE2b|LTR|ERVL-MaLR	-9298.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	4.98205465291303	5.12450785066071	5.62214382695122	5.80035612550419	5.75813168793507	5.68421522750861	0.945205312732901	0.00942257720833749	0.0965321108534039
Merged-chr9-64736874-5	chr9	64736287	64737287	+	999.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	969.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	7.78273737176703	7.70717476642997	7.70780163749264	7.60522977010158	7.75695804893659	7.67481149846843	-0.0740058838714985	0.733296381364793	0.932039456283818
Merged-chr15-102625820-2	chr15	102625312	102626312	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001310070)	promoter-TSS (NM_001310070)	-348.0	NM_001310066	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	7.94969746026268	8.22099207829281	8.03553452485695	7.96870671041645	8.09114935031517	7.77247249274706	-0.167950802735913	0.462660413600846	0.815390839279418
Merged-chr14-71209205-3	chr14	71208700	71209700	+	857.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42073.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	3.29206894593503	3.0830655335638	3.17911519357034	2.67188237608323	2.80954058083303	2.76413291274283	-2.22590604704714	0.00374375390086853	0.0495168136359035
Merged-chr5-43879579-4	chr5	43879046	43880046	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	10737.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.00823228542532	7.01115218392937	6.99592392239202	6.95394171590047	7.19678105801428	7.01337361309131	0.0902127217621714	0.710567204552589	0.924360582780855
Merged-chr10-128299951-4	chr10	128299447	128300447	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	5.15710675792694	4.94982638515202	4.87341025889568	5.16699707124213	5.12949421548252	5.05135127245436	0.239306261205446	0.519420811561834	0.84582839931823
Merged-chr9-88436868-3	chr9	88436353	88437353	+	832.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	2098.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	2.60538352479779	2.46139725001894	2.60245948288858	2.73639929736386	2.42263022590165	2.91706581882275	0.804679773521363	0.319245155977928	0.71327503587815
Merged-chr19-10291956-4	chr19	10291456	10292456	+	925.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	12921.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.90766407014828	3.93023510973924	3.68662168083145	3.59584135774509	3.32572872111647	4.09276483416893	-0.455556406018154	0.462204444713473	0.815159087955196
Merged-chr1-178309047-3	chr1	178308528	178309528	+	867.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-10125.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	2.82119087170561	3.13818289645328	3.07258047430649	2.97901681429604	2.96926406008572	3.25556763420568	0.230976538914229	0.739332562613271	0.934213727972483
Merged-chr12-73594622-4	chr12	73594138	73595138	+	792.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	9842.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.12884118894716	3.04390140597254	2.7697619882241	2.97889427825086	2.765047000821	3.2081968002184	-0.000345481172894552	0.999629043751568	0.999920050950963
Merged-chr10-68723278-4	chr10	68722796	68723796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	-450.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.02177947260453	7.27811047862281	6.79828710926781	7.4237972817487	7.62140362208367	6.88925942388792	0.451846835096722	0.132961417451121	0.487871386598783
Merged-chr15-89197222-2	chr15	89196722	89197722	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-748.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	3.75933510945511	3.63866159599541	4.16606306915705	3.40576968919165	3.55497089677018	3.52571631280943	-1.25025730033542	0.0347473812470759	0.228563647109175
Merged-chr10-115315021-4	chr10	115314534	115315534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	557.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	8.72295691169528	9.10043734798987	8.61571890112472	8.73286845618684	8.86552804381359	8.67586016106138	-0.0999738758241516	0.663937315861838	0.907439161928906
Merged-chr12-85913305-4	chr12	85912813	85913813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 19 of 32)	RSINE1|SINE|B4	88363.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	6.96441581260381	7.22984668941561	6.49095238538524	6.59360049289967	6.63100838163037	6.26108577762872	-0.669202618189859	0.032128124679626	0.21764365369554
Merged-chr7-83568808-4	chr7	83568288	83569288	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16143.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	4.92352365550152	4.74860130274808	4.79082121130626	5.66576921056666	5.68179908621807	5.45613359352808	1.60052602739905	8.56364388563932e-06	0.000349982161314478
Merged-chr4-119883060-4	chr4	119882563	119883563	+	802.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	68385.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.24204428499475	4.36399355912178	4.14412411344876	4.25065742132076	3.7185218553023	3.96473195594673	-0.751113572332443	0.147713666094725	0.512849817591999
Merged-chr9-73089781-4	chr9	73089275	73090275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-12623.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	4.56204292205532	4.55350284081016	4.67773873893127	4.39607173730549	4.27206153380309	4.46399103525072	-0.562273861988455	0.190538592765915	0.576949468718024
Merged-chr1-155558234-4	chr1	155557724	155558724	+	998.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028250, exon 1 of 8)	5' UTR (NM_028250, exon 1 of 8)	104.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	5.05579336140529	4.8207960924581	4.89121674122668	4.96102337774146	4.81957529631579	4.4486309541063	-0.349775655389592	0.404278550355251	0.77945770433258
Merged-chr5-117377964-3	chr5	117377464	117378464	+	872.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021539, exon 9 of 9)	3' UTR (NM_021539, exon 9 of 9)	11059.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	3.63928811190847	3.2880886259147	3.52441744936042	3.39185334049768	3.32589689317711	3.64593700867526	-0.136455575233146	0.822299538724261	0.958041123079214
Merged-chr19-25137732-3	chr19	25137252	25138252	+	737.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-99223.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	5.65224710140014	5.53385477050941	5.38819709661071	6.30313673418075	6.27631537630369	6.07781896466361	1.21664783126672	8.38910489358233e-05	0.00244668994036172
Merged-chr11-48813845-4	chr11	48813359	48814359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	MIRb|SINE|MIR	3532.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	5.83266072891429	5.88063307946441	5.78774509671586	5.76636910312765	5.97598518728178	5.74488192160205	0.0101365345047549	0.97357589053407	0.994039095662068
Merged-chr7-101850613-2	chr7	101850113	101851113	+	723.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	-5282.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	4.67301586120247	4.63268965700106	5.04208119625096	4.5824950191188	4.75187105725577	4.83529455307724	-0.134632298617208	0.747353945669754	0.936600911319824
Merged-chr1-153748522-4	chr1	153748018	153749018	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-908.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	6.30438729675363	6.03467590582903	5.64190319327767	5.40303967895871	5.59391800390447	5.52765405134932	-0.938641959553934	0.00653339414578525	0.0743400593479978
Merged-chr11-60835834-2	chr11	60835334	60836334	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	5203.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	6.93727529517398	6.91641744365615	6.62209145437401	7.02789392460869	7.3978836744329	6.69910735934478	0.377399262378642	0.20260903596737	0.59252027125208
Merged-chr12-110503585-4	chr12	110503080	110504080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	17841.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	6.86811069498195	6.39128468506676	6.69058697652643	6.85676156939052	6.7409801683165	6.5460422724968	0.0963714307790207	0.734421182542178	0.932426757820458
Merged-chr19-11786822-3	chr19	11786324	11787324	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16409.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	4.88360404942698	4.8961144602965	4.65378463407243	4.12697700425404	4.36641023715518	4.4696519859738	-1.22188519782335	0.00539259286590064	0.0645411265938767
Merged-chr13-95720029-2	chr13	95719522	95720522	+	806.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 11 of 35)	intron (NM_027711, intron 11 of 35)	23102.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	2.75392443507255	2.64589087095672	2.55192501303099	3.24877017284507	2.77215305562772	2.89896315531766	1.69660473713197	0.0331537304646198	0.222078216430533
Merged-chr3-88684893-2	chr3	88684393	88685393	+	777.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-894.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	6.35387465879848	6.66333498644284	6.82799331496182	6.75707126506718	7.16984845713914	6.60081664474618	0.396095273199138	0.190058686651167	0.576216758852106
Merged-chr16-90747193-4	chr16	90746632	90747632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	8808.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	4.51765515130743	4.14647357445074	4.29122413140173	3.84699164555702	3.78099812624043	4.59471917670835	-0.552237271202739	0.329187301806259	0.721152738507735
Merged-chr16-36630889-2	chr16	36630390	36631390	+	731.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MTEa|LTR|ERVL-MaLR	35187.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.94638211263098	4.88347794577171	4.72119631182051	4.60361982549008	4.87775023216758	4.38772060696486	-0.465794299552867	0.281201365427336	0.679363447090677
Merged-chr1-64616789-4	chr1	64616241	64617241	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025964, exon 1 of 3)	5' UTR (NM_025964, exon 1 of 3)	427.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	7.58049929191793	7.75755662155558	7.51545003034599	7.74921566738597	8.01926891996094	7.85217836385929	0.369374499369412	0.108289847902954	0.439562011040003
Merged-chr14-26645664-3	chr14	26645167	26646167	+	677.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	B1_Mus1|SINE|Alu	7533.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	3.01138676389036	2.70322101770706	2.83324446560039	3.01815932812461	3.04226479928493	3.25830671341347	1.1694928117702	0.103213606000663	0.428296315983601
Merged-chr8-40861819-1	chr8	40861319	40862319	+	671.0	f0_c57.idr	promoter-TSS (NM_001044740)	promoter-TSS (NM_001044740)	-548.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	3.11697550817746	3.03604380536479	3.17559804443568	4.11936556381214	4.26410350185362	3.90448811521158	4.42023142873676	3.36730540123416e-08	2.72820591846049e-06
Merged-chr18-23989566-4	chr18	23989039	23990039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-95.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	6.01329244161042	6.01706190004875	6.02157619630015	6.08269366364182	5.94352323424635	5.78821646192329	-0.117296078006875	0.691863765368161	0.918511075830524
Merged-chr12-59078649-4	chr12	59078152	59079152	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	11733.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	4.38043012051031	4.47420844618414	4.44237630700339	4.63583203656446	4.82625724880964	4.59569988001079	0.64724842585093	0.123995837014253	0.471278757298044
Merged-chr6-146410027-4	chr6	146409522	146410522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 9 of 56)	B3|SINE|B2	92201.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.56217007111822	4.83577067590439	5.11536877093221	5.26728704329745	5.22641013861002	4.89761501170116	0.648437568694933	0.113414196199632	0.449895293929195
Merged-chr11-87023610-2	chr11	87023110	87024110	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-29848.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	3.17761168951851	3.22621615897696	3.28029930079655	2.98111540642877	3.10746486538268	3.18341488080719	-0.585527500622588	0.363354038876266	0.748994025844601
Merged-chr4-99187694-2	chr4	99187212	99188212	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6222.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.2769314061951	6.4794361365762	6.48330412169941	6.52529112108255	6.59728938585697	6.88231684582091	0.410168453691669	0.137584367998975	0.495782776512872
Merged-chr17-26677296-4	chr17	26676783	26677783	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 1 of 3)	intron (NM_025272, intron 1 of 3)	887.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	8.30237872874557	8.67000948412395	8.06952630944848	8.36365353468537	8.66232906739006	7.60964999608691	-0.113909519714987	0.723925437618472	0.929178878081464
Merged-chr11-120631690-3	chr11	120631197	120632197	+	894.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1850.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	6.41299437460053	6.33165098949094	6.27515243789682	6.54618049051055	6.55696401688103	6.61042082471864	0.363947016853467	0.166816281650936	0.54240433228749
Merged-chr10-70246099-2	chr10	70245599	70246599	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	823.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.5608107624673	5.82178097024827	6.06638500571154	6.06463243695344	6.17040630171366	5.92341348513155	0.424083351627817	0.184510648143519	0.568220956020798
Merged-chr11-106664657-4	chr11	106664162	106665162	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	50619.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	6.30714788063577	6.00455405367346	6.42767164605894	6.12506382955207	6.27307532841731	6.5376445208115	0.108683469821749	0.721016032345492	0.928345098946286
Merged-chr14-27182322-4	chr14	27181834	27182834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	38341.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.85006925506796	7.04742197663723	7.02223705234552	5.83126629281097	5.92931601093268	6.1110218451702	-1.66199210546907	1.52884240559928e-09	1.63092203698853e-07
Merged-chr13-85188154-2	chr13	85187635	85188635	+	601.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-1250.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	3.11911841416625	3.27724471984735	3.28329511183454	2.93136802026261	3.0594753145593	3.29963626714813	-0.54759061844365	0.409169888956295	0.782581504561646
Merged-chr5-33352551-4	chr5	33352048	33353048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	L1MB7|LINE|L1	16976.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	7.03446366963896	7.5793496593597	7.24029929209236	7.4528538045998	7.37517993080135	6.89139114442088	-0.0560955594763475	0.847036540465613	0.96415075979756
Merged-chr9-48493384-2	chr9	48492884	48493884	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	1946.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	5.53955677882055	5.72164950935346	5.97457936349598	5.72121579413687	5.56173666627562	5.64934454062056	-0.190673897536264	0.561473364500808	0.865407801976397
Merged-chr4-147335554-2	chr4	147335054	147336054	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	159688.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	3.91949678264348	4.22147904399831	4.2638600795906	4.19045942311156	4.26154067878986	4.10150812974881	0.143708943523948	0.766764216928587	0.942573703853445
Merged-chr2-167358679-4	chr2	167358194	167359194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-9516.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.95159822044967	4.83348956709605	4.92326844362682	5.2311787810729	4.89709351664122	4.48152502113986	0.0268735737301661	0.950402503603613	0.988433104826972
Merged-chr7-67462732-3	chr7	67462224	67463224	+	773.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89866.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.38301611672778	7.7388889934255	8.05260506407113	7.58376755606843	7.89679130140999	7.73788566773169	-0.000781946445296861	0.997683131565906	0.999535504317229
Merged-chr9-44552391-4	chr9	44551887	44552887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-25966.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	4.40844899621044	4.57733043097483	4.66719828672682	4.85722232236434	4.73526847507341	4.65346975957536	0.486693210375097	0.238881193870101	0.635588293519071
Merged-chr6-97149906-4	chr6	97149402	97150402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1019.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	7.16990823274484	7.26159549534726	6.82482306499022	7.04376090559658	7.40059487137783	6.73577618738243	-0.00626239016340171	0.983091867711981	0.996213807099797
Merged-chr14-103486375-2	chr14	103485875	103486875	+	680.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-26966.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	5.79275411617813	5.44090784952174	5.80568304755171	5.38645915569963	5.7345329207631	5.5532594564321	-0.207824768031284	0.545521265627098	0.858209810368924
Merged-chr9-21160942-2	chr9	21160442	21161442	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4772.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	6.07416163013395	5.65370135752326	5.45000983525489	5.85901878598141	5.63760340082367	5.66351648363427	-0.074711749554886	0.830830746058147	0.960370002015736
Merged-chr1-107506401-3	chr1	107505888	107506888	+	764.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5035.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	2.76445939376336	2.59484240861363	2.60218014095392	2.66270123811116	2.66096779896515	2.92021220538171	0.482636302222145	0.52379465893585	0.848428438699863
Merged-chr17-56831208-4	chr17	56830710	56831710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027787)	promoter-TSS (NM_027787)	-202.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	4.84027046324043	4.60674730525441	4.66052658623996	4.92486978478058	4.73358973754306	4.84439893801283	0.284653924656177	0.477996214731658	0.823548314517321
Merged-chr5-105623793-2	chr5	105623293	105624293	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-76176.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.65709878486596	5.79122266771287	5.96896020601174	6.57684693061443	6.41650242706741	5.9286458762875	0.223593745337808	0.556454910952355	0.863603167403937
Merged-chr1-127222300-4	chr1	127221855	127222855	+	879.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	17369.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.72304117572758	5.74521915974793	5.78708504363905	5.73609744102288	5.76485933786488	5.60855158540644	-0.0703645953103248	0.819342117040823	0.957268403649969
Merged-chr10-127428172-3	chr10	127427669	127428669	+	641.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	7302.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	3.16405947918522	3.10932443663821	3.21166867339951	3.05867341035267	3.01963531596033	3.28258208070135	-0.182475077277858	0.778118148480133	0.945412868680785
Merged-chr18-38247416-3	chr18	38246939	38247939	+	984.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	Lx8|LINE|L1	2759.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.5108121153595	4.77299368396392	4.65880015373541	4.60156242475003	4.55048569001188	4.72445961487313	-0.0767651614753312	0.853483842223712	0.965687837146459
Merged-chr1-95667677-4	chr1	95667177	95668177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-83.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.83443002538465	6.91901216493626	6.5476449263923	6.38430294500831	6.80428017606468	6.70845052752752	-0.214628109944322	0.448337429096782	0.807211095970682
Merged-chr5-135168846-4	chr5	135168346	135169346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	CpG	474.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	8.84028558919577	9.02189520883248	8.43922616589595	8.64722026171053	8.95435775051651	8.50587869455356	-0.1016728389754	0.689016133227872	0.917235946766438
Merged-chr14-51062973-4	chr14	51062460	51063460	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	5.70594054800591	6.00086871741361	5.95302681577818	6.06640305083959	5.91802282631883	5.62346624119793	-0.000670606079058961	0.998339873472061	0.999627693601982
Merged-chr11-117168835-4	chr11	117168342	117169342	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30819.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.16819895276011	5.28612705997958	5.25685540211946	4.97121397227492	4.87475443467555	4.56384648298226	-0.878636233527673	0.0243908194181271	0.184015894654413
Merged-chr7-83660438-2	chr7	83659938	83660938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4943.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.00534192488761	6.2608115048689	6.35199824602059	6.09035172871138	6.15883209551408	6.49720881154583	0.0735732237984807	0.808344178924121	0.954683711776353
Merged-chr6-140614114-4	chr6	140613608	140614608	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8555.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.5306795668491	3.46865467207699	3.46269274645797	3.62609719652503	3.56404775771776	3.53405607947546	0.31616902179452	0.574727042602644	0.870862343796639
Merged-chr6-90483486-2	chr6	90482986	90483986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20910.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	2.61817183866627	2.69087794566199	2.51411189724076	2.5779730057758	2.40940767200853	2.77615045246777	-0.119600659599241	0.881015130215374	1
Merged-chr6-114361905-2	chr6	114361405	114362405	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-36031.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	5.38780969095167	5.07412597841655	4.81009556620688	4.90827505892114	4.94083000846336	4.57041151733264	-0.634517570736604	0.133504107424976	0.488698683323101
Merged-chr2-24935316-4	chr2	24934796	24935796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-15.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	6.63597707680512	6.55554129947144	6.66394977622064	6.48298755700454	6.49024532957867	6.62601645775121	-0.139087057284911	0.59062447177224	0.877301111216348
Merged-chr6-136553406-1	chr6	136552906	136553906	+	559.0	f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	B3|SINE|B2	34555.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	5.09446785750571	5.39621606196296	5.28409637252316	5.43455843270165	5.88349458109593	5.6908658427479	0.826712150774787	0.0201148053344872	0.162102927096562
Merged-chr13-55211066-4	chr13	55210567	55211567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	1285.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	8.66776082693294	8.87783797691406	8.66180189284451	8.60509653234256	8.58833507523441	8.7452333915656	-0.132912344755392	0.517776220658446	0.844734005892866
Merged-chr10-19065206-8	chr10	19064677	19065677	+	877.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49767.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.57922637899224	5.34377668235169	5.17412971253668	5.7348612034399	5.4947954781172	5.40733584817494	0.324399560706851	0.358096838277556	0.74454984718519
Merged-chr7-81859093-4	chr7	81858611	81859611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_111910, exon 1 of 8)	non-coding (NR_111910, exon 1 of 8)	110.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.11472420553218	7.06341559623691	7.30328516684919	6.79900964800934	6.77574723942194	6.99138987147445	-0.468178440914789	0.0600002851923815	0.317073284320274
Merged-chr12-69893139-4	chr12	69892639	69893639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201519)	promoter-TSS (NM_201519)	24.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	6.50852301858652	6.41681365070538	6.20660524069696	6.23408298531842	5.96411178784817	6.16016039046623	-0.45543504175373	0.114946375011526	0.45262685021812
Merged-chr10-75282856-4	chr10	75282341	75283341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-34036.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	3.65260521256096	3.81325493058584	3.70411717216673	3.68142111714541	3.72159144143926	3.66818877615936	-0.115512527557885	0.829691574096188	0.960134151531511
Merged-chr7-122021132-4	chr7	122020604	122021604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028758)	promoter-TSS (NM_028758)	94.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	6.19683525234312	6.55257220499957	5.97882594922617	6.22251718935623	6.29229896671372	5.88695160227593	-0.201156273999738	0.53485851510791	0.853197870578179
Merged-chr9-62894303-1	chr9	62893803	62894803	+	636.0	f0_balb.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32279.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	5.02028998248248	5.19798756449688	5.29563105816519	5.28949685127188	5.34519612292623	5.35880042243519	0.326497126308078	0.351332247990154	0.739233270938645
Merged-chr7-142392392-2	chr7	142391892	142392892	+	831.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4522.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	6.82778699367761	6.82518306091158	6.80237430740359	7.25849082284346	7.49019758003524	7.12794726456533	0.743205332839993	0.00280915966616789	0.040024752997003
Merged-chr7-44405792-4	chr7	44405278	44406278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21652.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	5.09780604952078	5.31738594442566	5.47554537723217	5.12647583716044	5.42686574551339	5.17372522128455	-0.0789935328518512	0.829810323671877	0.960134151531511
Merged-chr6-38711663-2	chr6	38711163	38712163	+	677.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	48594.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	5.98509999475543	5.59042739571516	5.42523962988717	5.69506385424229	5.79618953619198	5.55152533314246	-0.0154407997004514	0.964537281117109	0.991478598183903
Merged-chr16-92428329-3	chr16	92427853	92428853	+	917.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-28275.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.49641197567171	3.44812981073203	3.3710943826212	3.01852478958102	3.08943179907794	3.21457701827986	-1.42241317778197	0.0263830986106748	0.192918348985804
Merged-chr1-92741962-2	chr1	92741462	92742462	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89683.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	4.4873999617326	4.25565375019783	4.30210333694398	4.06154923329865	4.09783708591775	4.08981310632651	-0.748940541968547	0.109543426425257	0.442251498478588
Merged-chr17-45590879-3	chr17	45590427	45591427	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	1466.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.29591011201491	5.21327759503344	5.74253528675733	5.21303849331379	5.3236293404485	5.60802211033458	-0.0797124155743321	0.831420613970448	0.960444904168444
Merged-chr3-107331239-2	chr3	107330739	107331739	+	685.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2050.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	3.54650903680098	3.74005665284103	4.05925433540051	3.79070434759353	4.06478272441256	3.99020065112571	0.517825595328478	0.347049354286097	0.735199858635661
Merged-chr1-171392410-3	chr1	171391789	171392789	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	3329.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	4.66243881386009	4.55201949854548	4.96566942717773	4.57216119172883	4.71474997747528	4.92982532276087	0.0317032302801952	0.940372284558362	0.986826967165658
Merged-chr1-191397229-4	chr1	191396726	191397726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-185.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	8.65166349064191	8.51818140172552	8.27087133164651	8.44235495383829	8.54550202783266	8.4176241211829	-0.0326746145080402	0.880689465761964	0.972585260891374
Merged-chr3-31136369-2	chr3	31135869	31136869	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13551.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	2.71972144129698	2.6113568498383	2.92851752151243	2.47346293329922	2.73089540935432	2.88639194995346	-0.263321647366966	0.738670319397506	0.93406400924634
Merged-chr4-154160223-2	chr4	154159723	154160723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026388, exon 2 of 4)	exon (NM_026388, exon 2 of 4)	461.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	5.68547197470192	5.28008767198761	6.07756590856376	5.7809981820905	5.17106708102217	5.69173386474587	-0.265275602214165	0.511289935998964	0.841331921585713
Merged-chr12-75595565-5	chr12	75595105	75596105	+	878.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 1 of 13)	CpG	595.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	5.78911692700384	5.96188391430262	6.04214000958351	5.97310399600079	5.84476368763013	5.68545513160422	-0.149627933252769	0.627747531592327	0.893342827825027
Merged-chr7-27537442-4	chr7	27536954	27537954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	14193.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	6.79963040423269	7.02396544625676	6.78635078183758	7.06398815615256	7.14379133027675	7.00503477559885	0.299210605429414	0.22837003597894	0.623453111514788
Merged-chr12-32191152-4	chr12	32190655	32191655	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 10 of 10)	intron (NM_020272, intron 10 of 10)	17183.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.2487535459683	3.4220833301162	3.44011718348419	3.27593868455895	3.43401954830764	3.76027705580277	0.475978813566773	0.440091433695945	0.801567033070239
Merged-chr11-118163863-4	chr11	118163372	118164372	+	929.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001112699)	TTS (NM_001112699)	-34653.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.69775799020731	4.62967657084004	4.67553971142567	4.19409883787799	4.43584682207939	4.27222393700784	-0.890694040407673	0.0427925792181634	0.25938364556538
Merged-chr4-132882968-2	chr4	132882468	132883468	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	1490.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	4.55270241144495	4.82843502686106	4.79277922317134	4.89238418755446	4.78493063900045	4.89500303643205	0.287936843108096	0.470605140247056	0.819533130526298
Merged-chr7-97082441-4	chr7	97081940	97082940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	689.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	8.86699733719102	8.94104822202348	8.63540962722254	8.68652158809591	8.71186536860449	8.66075672788941	-0.189961641496132	0.355666038066106	0.742489966989298
Merged-chr7-3704200-7	chr7	3703765	3704765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 1 of 4)	CpG	224.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	7.35256077271235	7.22424265552142	7.327109711991	7.43426745609162	7.56896695340138	7.57848936042972	0.335132740587234	0.139550679089133	0.499150277507139
Merged-chr15-53104192-4	chr15	53103689	53104689	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 3 of 10)	intron (NM_010162, intron 3 of 10)	241994.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.48995982040044	4.25365193843377	4.29880424645296	4.35313023526788	3.9750229668785	4.2766719549368	-0.402877635923426	0.398594446062602	0.775273667788888
Merged-chr6-143751412-4	chr6	143750898	143751898	+	774.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100110.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	4.88876084839123	5.06908318107487	4.50149164598542	4.79967723131382	4.55767202351333	4.96982752427798	-0.169607029884339	0.698108038959421	0.920194115035571
Merged-chr16-43448724-4	chr16	43448233	43449233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-28537.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	4.75014260018834	4.78188403328307	4.61208640066276	4.58606607980071	4.68735059782312	5.13852178827517	0.213366982293161	0.617410846235869	0.888810836054056
Merged-chr11-5737330-4	chr11	5736847	5737847	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	3829.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	3.6814706549215	3.94496675299579	3.86927296852362	4.30578207251938	4.27293562541393	3.93967254994699	1.07353125119631	0.0385402892092399	0.243237361049383
Merged-chr8-79375747-4	chr8	79375294	79376294	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	23674.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.26633218686529	6.2736073674377	6.24084670543897	6.27216144080836	6.43133732707775	6.19636008211847	0.0846628187515809	0.759365709878078	0.940397410143401
Merged-chr1-65112662-1	chr1	65112162	65113162	+	1000.0	f0_c57.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9299.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	8.4547955351362	8.62521568969256	8.13545825696005	8.55865713475323	8.91039353541537	7.99997409309582	0.175922332931827	0.549423720140783	0.860273914502926
Merged-chr12-40470531-4	chr12	40470055	40471055	+	945.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	24502.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.94933198437023	6.25431277330578	5.59858207395284	6.49041424387575	6.76172910829857	6.31883584817788	0.9389759712445	0.00495476006375077	0.0608435176187388
Merged-chr13-51839448-4	chr13	51838954	51839954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.12920424973146	4.15330155617339	3.92481437510152	4.07485585543202	3.68462683662378	3.66588952041872	-0.771577718807127	0.152462529162587	0.520574204916928
Merged-chr3-58415291-4	chr3	58414787	58415787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081229, exon 1 of 4)	5' UTR (NM_001081229, exon 1 of 4)	567.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	8.59333580311801	8.75169648419725	8.55092742216652	8.4980083731334	8.39468766651403	8.4725291977597	-0.253611876210505	0.211573104769112	0.603945120913907
Merged-chr6-97397171-4	chr6	97396675	97397675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62111.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.36997177403257	7.30865924609047	7.18120994857114	7.28793010788357	7.57508017578439	7.2630877155994	0.145504978959183	0.549869221912133	0.86050509437616
Merged-chr1-152597089-4	chr1	152596593	152597593	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	28124.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.55371097473575	5.61220273272275	5.44074293652681	5.07009670904521	5.06183795952087	5.08167854023342	-0.945137312252057	0.0059367069805366	0.0692529811350749
Merged-chr8-92840011-4	chr8	92839512	92840512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 8 of 12)	intron (NM_008610, intron 8 of 12)	12715.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	4.47746659754161	4.33245800191383	4.29780823517094	4.51746319721479	4.54743021695503	4.27186511026342	0.216568196090235	0.627147893077803	0.893013107764865
Merged-chr12-81746612-4	chr12	81746156	81747156	+	850.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	L1MB8|LINE|L1	34514.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	2.8468595282593	2.62525963533309	2.56755985414722	2.6290574506682	2.51958074568044	2.76869093207617	-0.277163696112089	0.721352768898309	1
Merged-chr7-31150689-1	chr7	31150189	31151189	+	1000.0	f0_balb.idr	intron (NR_153431, intron 1 of 18)	CpG	482.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	8.10913198363325	8.14024032319985	7.86014889105666	8.28276815126382	7.99816432586649	7.89949964986941	0.0372145261858075	0.874056312844968	0.970567134801346
Merged-chr17-29414778-4	chr17	29414277	29415277	+	905.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	53863.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.38964589054584	3.10816079480483	3.0276718448767	3.34375623421012	3.40022847708885	3.5105007026353	0.902891713529742	0.166180685498689	0.541302113093556
Merged-chr15-58567621-3	chr15	58567119	58568119	+	839.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	152151.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.13291349195274	2.69416785795509	2.78370065681837	3.16392374081173	2.74407853065664	2.98622056907319	0.408177328451549	0.594383208534468	0.87904018654775
Merged-chr10-117064515-2	chr10	117064015	117065015	+	984.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007636)	promoter-TSS (NM_007636)	-663.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	4.24590272949547	4.50895763159986	4.38819768323227	4.25080964042406	4.29621558676314	4.76302897661483	0.152263726960974	0.746839244379313	0.936368017453423
Merged-chr4-137594801-4	chr4	137594295	137595295	+	947.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	623.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	7.58153663369038	7.61837663526709	7.72329509433243	7.62729438534528	7.6470360014116	7.69270066522318	0.0226478975218701	0.917070542335415	0.981522312365153
Merged-chr12-75684202-6	chr12	75683687	75684687	+	901.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-14650.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	4.71543347757174	4.99431742843337	5.18624548848496	4.77569232822994	4.7534441056344	5.24887983910102	-0.0815122557250484	0.846635794680197	0.964082230147561
Merged-chr10-20725128-4	chr10	20724650	20725650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013875)	promoter-TSS (NM_013875)	-72.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	6.93586548236875	7.172487765098	6.48935546490514	6.91879861970175	7.39688424103442	6.66199580185634	0.206075785184194	0.530714952533788	0.851304720575858
Merged-chr10-45019620-4	chr10	45019118	45020118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47596.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	7.73957222670493	7.84530697818229	7.01500631163584	7.56180467005067	7.94508303823659	7.18649027971456	0.027123831733797	0.934162471375168	0.985707838096286
Merged-chr13-115957631-2	chr13	115957138	115958138	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	352050.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	3.47134012443209	3.60409976100423	3.66630627407855	3.39276551460797	3.54000102283832	3.47255583864264	-0.390656916421236	0.496848850410669	0.833336003728501
Merged-chr11-114817097-2	chr11	114816597	114817597	+	770.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	18173.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	2.26299361500421	2.22429380736657	2.48539697382343	2.09258310093062	1.98660279070519	2.17864518290281	-1.8686138113148	0.050040790918123	1
Merged-chr19-11096008-3	chr19	11095506	11096506	+	717.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027058)	TTS (NM_027058)	-14903.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	3.21168143720004	3.45926881880272	3.27154766841461	3.25656557204638	3.07183034203098	3.45270749813905	-0.238713129921095	0.710007880973241	0.924168386336004
Merged-chr15-51955824-4	chr15	51955331	51956331	+	692.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35929.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	4.13942702673799	4.48817761008001	4.10978877842209	4.55797978998785	4.51357895806509	4.27974935513095	0.503566302979789	0.28777984740172	0.685197171219341
Merged-chr7-5016246-4	chr7	5015758	5016758	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025324, intron 1 of 1)	MIRb|SINE|MIR	750.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	6.87697493347014	6.60559896847396	6.79319141179978	6.95331244534917	6.93730754082297	6.57076399671407	0.123900671137526	0.647299668283987	0.901302387510186
Merged-chr11-119041875-3	chr11	119041304	119042304	+	923.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-891.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	5.51277337118041	5.0278940923275	4.79881666783285	5.21488391233601	5.11469196849208	4.73706319016735	-0.235530576221574	0.5872930769113	0.875808418797345
Merged-chr18-39490900-4	chr18	39490395	39491395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3650.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.69968870387101	7.57930685402117	7.94161875473889	7.85143354719083	8.00439123601541	7.83444088292482	0.229183510521065	0.320645045818433	0.714486534537161
Merged-chr9-121305653-4	chr9	121305135	121306135	+	752.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	8133.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.08577953468507	3.70309068597189	3.99266852090987	3.89574388556581	3.96232072397064	4.15263995419243	0.202489820486603	0.697439296591011	0.919959169598449
Merged-chr13-100203575-4	chr13	100203056	100204056	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1434.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	4.97858203056111	4.4307686590337	5.09355062640333	5.2221508128801	4.77789270591011	5.50054517966934	0.70311617966096	0.125617329180342	0.474191879348443
Merged-chr10-81427158-3	chr10	81426691	81427691	+	934.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008688)	promoter-TSS (NM_008688)	-18.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	4.63531428111403	4.45509439567971	4.35454503882591	4.54330826985233	4.74322305188834	4.22815220603848	0.107908586194299	0.815169086831284	0.956370078970016
Merged-chr4-42949243-2	chr4	42948743	42949743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355438)	promoter-TSS (NM_001355438)	-624.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	4.15707723141584	4.00974899196407	4.09875249564072	4.42633680537631	4.3801111046264	4.48003287256267	0.915978479298465	0.045180817795819	0.268198536370264
Merged-chr19-3861316-1	chr19	3860816	3861816	+	566.0	f1_balb.idr	intron (NM_001271496, intron 1 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	9543.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	5.33643282739202	5.49079144213565	5.84526854076906	5.79703569891633	5.73319546983005	5.71005147157295	0.34589525838093	0.303182711667315	0.699862332768671
Merged-chr7-4995654-2	chr7	4995154	4996154	+	608.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026741, intron 1 of 1)	intron (NM_026741, intron 1 of 1)	447.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	3.18534371967427	2.95464299573911	3.14640897506958	3.29310609346166	2.98553514331661	3.21865598796947	0.305464281173847	0.646413413672059	0.90099114147517
Merged-chr17-45554601-4	chr17	45554100	45555100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	4.23487614255094	3.90328559640138	3.84320677572487	4.01754776857395	4.14370699463001	4.11594814329335	0.235711107038878	0.642617638767325	0.899442017301411
Merged-chr2-23088642-4	chr2	23088116	23089116	+	832.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355638, intron 7 of 13)	intron (NM_001355638, intron 7 of 13)	19544.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	4.50977518278424	4.35952363783364	4.91064741577103	4.5738746456922	4.63681520141646	4.83835294074293	0.194238794082087	0.661476743782798	0.906392485696264
Merged-chr18-65580932-8	chr18	65580467	65581467	+	988.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207255, intron 1 of 5)	CpG	737.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	7.5861785894248	7.4672953522427	7.3863904374126	7.64327517268131	6.92427822059448	7.01128575460276	-0.362344281181001	0.21410705871619	0.607329491867662
Merged-chr3-33801065-4	chr3	33800588	33801588	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290502, intron 2 of 9)	intron (NM_001290502, intron 2 of 9)	905.0	NM_001290500	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	5.19422386622456	5.55660566284853	5.50312416585038	5.28798493109807	5.41945511701032	5.26419637703505	-0.185124400054077	0.599385169018166	0.880985224772602
Merged-chr15-64311421-2	chr15	64310921	64311921	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	1252.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.99124820794813	4.88765228729056	4.67602919924311	5.01611103929421	4.90832711594091	5.11587404827592	0.308751821161892	0.427126816813007	0.794056217288008
Merged-chr15-6415543-3	chr15	6415063	6416063	+	702.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	28815.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.94736287797977	4.07800459501901	4.03604718848099	3.82007172069035	3.92356366394489	3.96045527434419	-0.363491050862928	0.465779083632903	0.817213965217222
Merged-chr8-95335910-4	chr8	95335390	95336390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	3606.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	5.35942749270551	5.27456087027437	5.45777690639525	5.42434554063426	5.77499296852473	5.36900335752477	0.363962487168908	0.296905040005758	0.693511179566253
Merged-chr12-102282301-4	chr12	102281819	102282819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177620)	promoter-TSS (NM_177620)	-755.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.76823303832822	6.09358659197905	5.9857731032563	5.49485527959241	5.85208674789057	5.64785475451423	-0.490511833685361	0.133320915180734	0.488425031871102
Merged-chr18-24530259-4	chr18	24529734	24530734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144861)	promoter-TSS (NM_144861)	-30.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	6.23818845190081	6.54522210061276	6.0371892217669	6.40608586169361	6.28758428313621	6.39506374583286	0.0947534357223933	0.74945666423962	0.937347474305195
Merged-chr4-134938665-2	chr4	134938165	134939165	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	7685.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	2.2415399889475	2.0646976871461	2.04002031452407	2.39864933564443	2.13400455861331	2.45420922248985	1.49013776100412	0.114609157427319	1
Merged-chr4-34613893-3	chr4	34613415	34614415	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159563, intron 1 of 19)	intron (NM_001159563, intron 1 of 19)	1027.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	3.16942554116035	3.1141477848239	2.94699766038329	2.99228185805605	3.24320463657908	3.20134348083577	0.290204372375195	0.664812950593275	0.907721942545399
Merged-chr3-60611979-3	chr3	60611377	60612377	+	673.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 3 of 7)	intron (NM_001253711, intron 3 of 7)	110698.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.4638609585761	3.32298839341619	3.49873845484814	3.32643629823724	3.43834925939434	3.56862201922033	0.0647088304907143	0.912631241578556	0.9803740348902
Merged-chr5-21139684-1	chr5	21139184	21140184	+	720.0	f0_balb.idr	Intergenic	Intergenic	-36595.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	2.89538399173963	3.07883623902032	3.09330575988917	2.98823643430462	2.80213791770399	3.10808631189626	-0.271263196214485	0.695129358590577	0.919230570201314
Merged-chr10-79885246-2	chr10	79884746	79885746	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	B1_Mur2|SINE|Alu	-1066.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	3.21629110098808	3.15831473130707	3.02961247393935	3.14072152503194	2.99096601113694	3.2772970943372	-0.0256248047424162	0.968931088336816	0.992882522302438
Merged-chr14-78651839-3	chr14	78651359	78652359	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 3 of 29)	intron (NM_001081336, intron 3 of 29)	-7408.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.43822815179643	3.6639549568333	3.45252396752402	3.42910922751905	3.49512006502139	3.63104589719904	-0.0344209450633184	0.952651925652204	0.989233398181335
Merged-chr7-122135278-3	chr7	122134769	122135769	+	750.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	2228.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	3.41755000035805	3.63028501457945	3.93078250869884	3.66147894971522	3.40552839237093	3.71551037645118	-0.252508164440454	0.670944637004026	0.910258288590475
Merged-chr2-125795315-2	chr2	125794820	125795820	+	629.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-12450.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	2.92832632232924	2.57850332357345	2.59751486230256	3.19961143681668	2.78796121241214	3.11922690307649	1.62481219182547	0.0456675103838456	0.269892201910225
Merged-chr9-57652558-4	chr9	57652049	57653049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	1082.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	7.79409472466952	7.65697695391176	7.71185163652516	7.86958003300699	8.17456744870385	7.58864191058043	0.269328941836216	0.282799037692414	0.6807006950826
Merged-chr4-26347435-4	chr4	26346936	26347936	+	831.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-784.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	3.96981171049364	4.15451567996779	4.35167185790503	4.30315708593521	3.97998257572769	3.91013494940028	-0.237725489094436	0.641135904462128	0.898789256818882
Merged-chr10-25331914-4	chr10	25331417	25332417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27881.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	7.03488207713698	7.22432573891398	6.78374480877569	6.74036787566768	6.80004641446229	6.47544410305597	-0.535461947578465	0.0510105646810174	0.287820374718797
Merged-chr2-145830213-4	chr2	145829698	145830698	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	44082.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.23978499676511	6.31093828813806	6.15398195249889	6.36160477781607	6.52820710394131	6.33901443900275	0.292288937083861	0.287824174872229	0.685243889635721
Merged-chr12-83903983-2	chr12	83903483	83904483	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	17951.0	NR_073563	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	4.10752459424075	3.8716986052212	4.32233778302714	3.99960573559606	3.97121721425049	4.13370334893555	-0.210865710230196	0.675970083517008	0.912421384593547
Merged-chr1-173450047-2	chr1	173449534	173450534	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	29430.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.18290459646076	3.29744939752937	3.33067127952273	3.37731555695441	3.15286807939762	3.40164328319536	0.160112273098231	0.796268506359917	0.951410019719943
Merged-chr2-120629022-4	chr2	120628529	120629529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19434.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	6.59458418051642	6.48425260676985	6.47078349214537	6.67362348923667	6.85273173117745	6.24807342627029	0.17773889744662	0.543583339770774	0.857551302506722
Merged-chr2-166712484-4	chr2	166711990	166712990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1342.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	8.51857494511978	8.0327198039311	8.1786296678365	8.57940243979234	8.51670074754611	8.22094647944609	0.264220646864002	0.281352823266459	0.679520750186356
Merged-chr7-125588835-2	chr7	125588334	125589334	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14595.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.19309633769562	2.05317395169294	2.21300815271092	2.33432709331662	2.30049327998847	2.41852277686869	1.40677623606041	0.112031315518936	1
Merged-chr10-75298762-4	chr10	75298253	75299253	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-18124.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	4.50244754668816	4.37589307873277	4.30509505704182	4.52397466794548	4.38342339046085	4.41836783792707	0.102930173958486	0.813998621452174	0.955984497572397
Merged-chr2-35729704-4	chr2	35729216	35730216	+	992.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114125, exon 17 of 17)	3' UTR (NM_001114125, exon 17 of 17)	32984.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.87373938182789	5.22290026978498	5.1934587238946	5.05342343687207	4.65552448562059	4.76022178252617	-0.589708715694352	0.145241148823353	0.508323093916695
Merged-chr15-83100190-4	chr15	83099682	83100682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023475)	promoter-TSS (NM_023475)	-23.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	6.0273753661542	6.16192711554497	6.0243490187225	6.51106451387624	6.2904408319383	6.08571651706119	0.399145363748352	0.174938933943282	0.554615474222784
Merged-chr2-124618736-12	chr2	124618359	124619359	+	892.119446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	8563.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.78072520145634	5.68863839878685	5.8147757801793	5.66679557669659	5.54945404958587	5.61680651973739	-0.276441333570507	0.374894381263226	0.758219381813146
Merged-chr9-109049980-2	chr9	109049480	109050480	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357932, intron 2 of 5)	intron (NM_001357932, intron 2 of 5)	-1116.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	2.43305560975908	2.26532513302625	2.53358947723522	2.25766362192374	2.28519350056236	2.22062892232249	-1.03780312568439	0.230744999181057	1
Merged-chr18-37999129-1	chr18	37998629	37999629	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-160.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	5.49531724769152	5.91121362159046	5.86083053552427	6.0879951801177	5.63440863013981	5.69181916242856	0.0980389319642324	0.776142971314712	0.94480820353868
Merged-chr2-94406545-4	chr2	94406034	94407034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027831)	promoter-TSS (NR_027831)	155.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	8.1108875738037	8.3412097641609	8.13844068667973	8.28777630510688	8.24992504774925	7.99123760733705	-0.0219414144534077	0.921517850732125	0.982542868764899
Merged-chr15-59201411-3	chr15	59200903	59201903	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-105545.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	4.50080764907508	4.19815071686486	4.5531955898092	4.18114080278254	4.21158511804367	4.4602425949741	-0.363537335341096	0.43455706948818	0.798470116010105
Merged-chr19-41264762-4	chr19	41264234	41265234	+	813.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-730.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	7.60231625309504	7.84116878208403	7.63099840747274	7.68170092790168	7.84582931031643	7.6967454090016	0.0690486051673752	0.760458778007437	0.940784935851601
Merged-chr2-35326732-2	chr2	35326232	35327232	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	10277.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.52578432181727	6.63371434716102	6.44837087348305	6.40717115197157	6.62563294675478	6.35447756009456	-0.105417499508993	0.698344057578242	0.920332843065367
Merged-chr2-30093838-4	chr2	30093359	30094359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-224.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	4.8032238471206	5.23805889740492	5.40177192830153	4.9778086939898	4.78937291494422	5.2645305426388	-0.315644324004877	0.447113615087178	0.806270036091875
Merged-chr10-94312402-5	chr10	94311853	94312853	+	824.493347	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	CpG	404.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.71164551999601	3.77100467184194	3.60485535861361	3.77554596146483	3.56088918765229	3.44617402884059	-0.331530112808713	0.558051456656989	0.864474137025359
Merged-chr15-84127084-4	chr15	84126586	84127586	+	846.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3911.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	3.53811774307818	3.53811785392305	3.99155887639241	3.64106049412411	3.65570007241279	4.22491941755893	0.516968933205911	0.389834372604875	0.769386586235922
Merged-chr13-113844074-4	chr13	113843580	113844580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	49572.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	2.47509758329125	2.63118811156537	2.4417237509539	2.66447001401309	2.57654615779205	2.77147337013931	0.836961909596672	0.288557193412598	1
Merged-chr10-8884562-4	chr10	8884051	8885051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	MIRb|SINE|MIR	1519.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.89388837362385	8.23261989992202	7.67762884202215	7.84814991420196	8.10150316535323	7.57676075195398	-0.133978279546078	0.61967782974805	0.889868376148509
Merged-chr6-115361746-3	chr6	115361199	115362199	+	936.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	555.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.45509509643387	6.721626940471	6.00584574550872	6.45660380031859	6.18670956438558	5.67596048781515	-0.463517014994203	0.203825343196011	0.594024469127845
Merged-chr4-86427565-4	chr4	86427068	86428068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130735.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.76675027431485	5.01413155461365	4.90596955419309	4.61476502411815	4.59209878370134	5.24853851875547	-0.127681333617865	0.772572503350678	0.943821638461157
Merged-chr10-41953809-2	chr10	41953309	41954309	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	64573.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	2.83321522477498	2.75494213768897	2.86491617744153	2.77879540036286	2.55409087224618	2.93739948631743	-0.296505317813963	0.691740451749042	0.918479255575252
Merged-chr2-126477786-4	chr2	126477290	126478290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13763.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.46987075772678	6.42236632866096	6.17400626569804	5.63525305864761	5.66166109064988	5.58166101367595	-1.28540968440374	1.84125731068115e-05	0.000680619006251253
Merged-chr3-104442176-4	chr3	104441705	104442705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69713.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.14209427648194	4.10147478594308	4.25616312257278	4.01366774963817	3.96579604538665	4.05149465822619	-0.454592477879907	0.342687121274533	0.731530054311586
Merged-chr8-121793384-1	chr8	121792884	121793884	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	36185.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	3.32307424116818	3.52005687409073	3.50014449481912	4.22355567744055	3.97675447176023	4.50501672104969	2.63331188943319	1.02608681947611e-05	0.000410276944137283
Merged-chr16-78218339-2	chr16	78217839	78218839	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37115.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	7.29631775490528	7.28267514432372	7.21180925188123	7.65924801533107	7.93268071518697	7.34121905824776	0.603343934630658	0.0190504249337547	0.15640333082268
Merged-chr7-59227261-2	chr7	59226761	59227761	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1489.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	3.11887219971029	3.0404298808235	3.33610994146007	3.52619295183644	3.29718257170787	3.46177580354885	1.08230399813859	0.0872186839395319	0.391545306352337
Merged-chr8-79375036-4	chr8	79374559	79375559	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	MIRb|SINE|MIR	24409.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.91802186586115	7.29346237695629	7.25135585515338	6.90772045369278	7.10802600877955	7.13202133254069	-0.167190410612264	0.516854586300926	0.844321671216418
Merged-chr17-30112683-3	chr17	30112188	30113188	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 2 of 5)	B4|SINE|B4	107649.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	3.6371919107472	3.36192948045033	3.49365032210023	3.87829205331997	3.61199325738082	3.44992134973069	0.556630629795575	0.347428083317598	0.735499197473367
Merged-chr2-91950424-4	chr2	91949925	91950925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-77.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.71483698316906	6.7644180423134	6.51059178565507	6.443640121159	6.45260723499347	6.49788814763319	-0.339703517044482	0.195740830804556	0.583438527663774
Merged-chr11-20656762-2	chr11	20656271	20657271	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24794.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.82845211459289	2.80862868825782	2.85975994709905	2.86152582807188	2.52050638894645	2.81114327136473	-0.500860768119547	0.506813091996741	0.838597859957521
Merged-chr11-55452275-3	chr11	55451776	55452776	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	8932.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	5.81260615132443	5.68657685215301	5.60040886764954	5.09433789518194	5.16832598380848	5.05792145368304	-1.16008207606368	0.000669516605054747	0.0132382996875113
Merged-chr5-115515582-3	chr5	115515081	115516081	+	772.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8905.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.99637590013917	6.9290732263638	6.98632399673284	7.13819828761915	7.23775722719862	7.17257159762755	0.327055507692892	0.163779073708533	0.537798828885102
Merged-chr2-153091628-1	chr2	153091128	153092128	+	871.0	f1_balb.idr	Intergenic	Intergenic	-16840.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	4.59086935674767	4.57991485380474	5.23624178279776	4.96181259719076	4.55386424939949	5.05881537020956	0.0895756686221214	0.846406295958152	0.964017504522256
Merged-chr18-49756343-3	chr18	49755837	49756837	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-736.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	6.77871558269294	7.22940370229757	6.94089591505215	6.97110689487132	7.52890258526097	7.18309644225548	0.384312439124386	0.181047879280115	0.563309390781554
Merged-chr2-25263562-2	chr2	25263062	25264062	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	964.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	3.24193096237069	3.23666736688372	3.31965633490511	2.85712468790334	3.14008539038069	3.44218895520184	-0.418546534524711	0.546468015743078	0.858776736684105
Merged-chr14-31188897-4	chr14	31188403	31189403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17923.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	7.93518313125796	8.00511233512008	7.86671002064862	7.74256731112803	7.82114794641333	7.69213155944247	-0.262642096406972	0.220338134862211	0.614730271259138
Merged-chr5-112249829-4	chr5	112249367	112250367	+	955.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021351, intron 3 of 5)	intron (NM_021351, intron 3 of 5)	2651.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	5.83207950116353	5.66762534812144	5.83667156348057	5.89172297963435	5.85390033301919	5.89800396316412	0.183227771800037	0.543712762385648	0.857551302506722
Merged-chr11-97659191-4	chr11	97658685	97659685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	8.4816950239478	8.29120659362085	7.7199616839677	8.1393444449341	8.40775436382931	7.93497754756799	-0.0430082226033613	0.878871297793012	0.972022263162412
Merged-chr18-53904445-4	chr18	53903935	53904935	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	Lx8|LINE|L1	42322.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.23600242099789	6.23741262066366	6.13222506582524	6.35688976847094	6.44641669621738	5.93020643272678	0.120442198442452	0.689387326856869	0.917325404950403
Merged-chr10-99181717-4	chr10	99181220	99182220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	73585.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	8.62726475037629	8.58092144220884	7.95505171578143	8.42574583859005	8.78949661933193	8.0429339670176	0.0473538863228165	0.873122487947751	0.970371929331986
Merged-chr4-125066714-4	chr4	125066229	125067229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175246)	promoter-TSS (NM_175246)	57.0	NM_001356560	76793.0	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	7.02146334203218	7.25579753480757	6.86705737840039	7.26062612104315	7.20007699379763	7.01256758598845	0.150477968187281	0.556957893326019	0.863921711833256
Merged-chr12-32344088-2	chr12	32343588	32344588	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-34701.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	3.55490273403654	3.59958906008249	3.63604392765196	3.95920825598878	3.83269544965799	3.53801873075148	0.669433143006881	0.230723118260787	0.626416175824539
Merged-chr16-32698762-4	chr16	32698249	32699249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25595.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	4.34524954514031	4.45846684178765	4.5569321998397	4.95981379098164	4.65506523140624	5.05888040508983	1.0451172825368	0.0140036074823948	0.126763726217919
Merged-chr8-123319891-4	chr8	123319324	123320324	+	918.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1248.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	2.40168498732812	2.33355588563626	2.43486883367753	2.55017995581691	2.50789745319955	2.81639906018049	1.4470267809352	0.0768232237433666	1
Merged-chr11-70500418-1	chr11	70499918	70500918	+	625.0	f0_balb.idr	Intergenic	Intergenic	-4856.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	7.096609205583	7.22076820367603	6.78392563176642	6.82679994330244	7.04665597839156	6.56742210071422	-0.327974939516791	0.245233014478606	0.642381314494918
Merged-chr5-124582735-4	chr5	124582226	124583226	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181410, intron 2 of 12)	intron (NM_181410, intron 2 of 12)	3578.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	3.22629554025654	2.94860248197274	2.91844162540586	3.17579825966455	3.02389769561796	3.17510033709176	0.355425910531297	0.601402486450303	0.881938496212464
Merged-chr14-60738733-4	chr14	60738259	60739259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	L1MB2|LINE|L1	5855.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	4.61626127451303	4.76535617438827	5.27369795579548	5.07854826314573	5.40137572012	5.15100634151593	0.679246465840257	0.102925538861377	0.427792386539026
Merged-chr14-25474157-4	chr14	25473667	25474667	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14982.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.95172051977681	7.77345496512644	7.51329785415787	7.77077492235411	7.83851229987028	7.24761326008739	-0.157633216196624	0.56344443252992	0.865960183634089
Merged-chr3-19474253-3	chr3	19473750	19474750	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34345.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	3.48319171660857	3.15522228809768	3.17516576811562	3.07921181972851	3.03969116911471	3.06642727760418	-0.962176518720044	0.145967856401873	0.50948528298308
Merged-chr5-120775880-1	chr5	120775380	120776380	+	919.0	f0_balb.idr	intron (NM_145226, intron 1 of 15)	RLTR11A|LTR|ERVK	1779.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	5.1376687598358	5.44306186560868	5.22905293563475	5.09974187516923	5.14527799896404	4.72946710984482	-0.540183595089582	0.164049284146543	0.538101489858471
Merged-chr5-86171632-2	chr5	86171132	86172132	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	1111.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	3.47048939829045	3.46564382734456	3.88541632409125	3.50377534308171	3.46200038411622	3.61717572387184	-0.308176562818264	0.600067877259099	0.881447020636499
Merged-chr2-30063217-2	chr2	30062717	30063717	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	1221.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	5.7120487154992	5.92506409156663	6.4494178248374	5.92818792162902	5.86904867604264	6.01774608182203	-0.205505764390581	0.548336170314233	0.85965540331284
Merged-chr4-151934496-2	chr4	151933996	151934996	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172704, intron 1 of 15)	CpG	776.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	5.83839156047685	6.46873141096095	6.10587565384012	6.29043082712113	5.98245037428294	6.0073490798958	-0.116463438338202	0.725063537521107	0.929505969181878
Merged-chr7-73524617-4	chr7	73524141	73525141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17105.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.23555149633485	7.33318760128442	6.98399514383561	7.10818995968366	7.28575766714331	6.9263364587723	-0.113763581726884	0.659742466959502	0.9056031408289
Merged-chr14-76153501-2	chr14	76153001	76154001	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	42610.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	4.71961873684745	4.75640932934541	4.55435902526432	4.11000258328979	4.20947293385225	4.11550392544277	-1.38981844452706	0.00207294670907555	0.0317946082523057
Merged-chr1-51480623-4	chr1	51480117	51481117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2218.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.62238137463235	5.7940091581146	5.80324497277087	5.51202677604469	5.74195018971641	5.79068694513849	-0.0986482327467261	0.756843284870835	0.939707175115381
Merged-chr11-100441118-4	chr11	100440619	100441619	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026561)	promoter-TSS (NM_026561)	-30.0	NM_001102650	68106.0	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	4.67589063177338	4.46379328403454	4.22775195424785	4.4022727889043	4.35253720074725	4.5642491797336	-0.106803946674447	0.813988479410482	0.955984497572397
Merged-chr13-105216575-4	chr13	105216131	105217131	+	753.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	76383.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.62144606849096	3.40876533882371	3.30984853869381	3.50482081626558	3.07234048448877	3.55001726610489	-0.253174510937342	0.697189188429737	0.919859963548202
Merged-chr7-98106790-4	chr7	98106277	98107277	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	2471.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	4.11062960912383	3.89693806328644	4.32193297185131	4.72237793132964	4.84923396929804	4.79419099729787	1.76703265466819	0.000106461952198482	0.0029901140341215
Merged-chr4-135282900-4	chr4	135282389	135283389	+	929.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10129.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	3.21574087770241	3.05386332834589	3.09380317897699	2.91044953874792	3.01548987118281	3.10739067184893	-0.513695598316842	0.440385632962307	0.801759315323114
Merged-chr12-85479600-12	chr12	85479070	85480070	+	915.736084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5680.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	2.70975267088635	2.57123146815373	2.66880536645098	2.38866543723638	2.30546065298532	2.68135096216517	-1.14349849859166	0.172184231864815	1
Merged-chr1-136559528-2	chr1	136559028	136560028	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65373.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.75182856084138	6.00949026229027	5.84859748077286	6.53018784037453	6.9745892314023	6.38585891712808	1.30969608399094	2.98277190902548e-05	0.00102304404371885
Merged-chr1-65186585-4	chr1	65186105	65187105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111320)	promoter-TSS (NM_001111320)	-80.0	NM_001310624	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	8.18541218327786	8.60542733197371	7.73695921510976	8.27058783530648	8.55798642354979	7.93488974833007	0.0731895706864604	0.808983921925569	0.954721853010197
Merged-chr17-43050717-3	chr17	43050196	43051196	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	MIR|SINE|MIR	34141.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.36249991845086	3.32214934082225	3.86431083896466	3.08865108538797	2.80630274506354	3.05952505991657	-2.42379747309675	0.0010281658060706	0.0184279268923694
Merged-chr2-155374097-2	chr2	155373597	155374597	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7759.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	3.20329143005019	3.23038610483125	3.22876007252014	3.33270983891814	3.16183010046175	3.24287683381393	0.103388807251569	0.867623551257752	0.969417251892744
Merged-chr4-147934765-1	chr4	147934265	147935265	+	543.0	f1_c57bl6.idr	intron (NM_011122, intron 1 of 18)	intron (NM_011122, intron 1 of 18)	2011.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	3.04529312207496	2.99167953530512	2.79734989879197	3.09536679755182	2.75557432727438	3.44535207769081	0.77655186655235	0.307825425846694	0.703881338697182
Merged-chr5-129021038-6	chr5	129020598	129021598	+	893.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009391, intron 4 of 6)	intron (NM_009391, intron 4 of 6)	942.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	5.84744151178815	6.16364128403214	6.04915853157179	5.86443997471283	5.88477069028523	5.8520929861603	-0.27790166745989	0.357620866118525	0.744220613945335
Merged-chr11-44471188-4	chr11	44470706	44471706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-658.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	8.15146956987552	8.33636565021928	7.79547291119873	8.35964230260993	8.78174644995631	8.09559754584282	0.46371148014311	0.0952122324263726	0.411175988293403
Merged-chr5-144769850-2	chr5	144769350	144770350	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	RSINE1|SINE|B4	1058.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	5.06618587997263	5.60343947710823	5.48963556494859	6.09541552776144	6.08060246442313	5.75107617363695	1.06789182926607	0.00246552878356071	0.036335763199171
Merged-chr6-51534019-4	chr6	51533523	51534523	+	944.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9763.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.76436227624088	7.17523883123901	6.61239469542436	6.8643258724993	6.70750555602774	6.52706321649753	-0.26742026738098	0.357989312430141	0.744540459625255
Merged-chr7-19276033-2	chr7	19275533	19276533	+	645.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177691)	TTS (NM_177691)	4016.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	4.46269867814647	3.94135616373721	4.54423236602076	4.91309343951656	4.55778561776466	4.69052512994031	0.960757639627778	0.0469401307710488	0.274302577512285
Merged-chr3-88494107-4	chr3	88493607	88494607	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019390)	promoter-TSS (NM_019390)	-795.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.6959935539173	4.75035666908678	4.40046041847239	4.26357629667077	4.32439730179317	4.12859012678038	-0.980825059804903	0.0314036561569995	0.214711209655844
Merged-chr8-119799003-3	chr8	119798507	119799507	+	766.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20591.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	4.37393229152235	4.47808733043834	4.70462677603199	4.41703380734159	4.28062010855808	4.58106997632001	-0.240526984391701	0.588854412243033	0.876650937479947
Merged-chr17-26647353-4	chr17	26646844	26647844	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-29052.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	5.78584434052847	5.73852716831502	5.62331014443666	5.51985746338487	5.29354608903817	5.65862540727717	-0.441901334359038	0.180673528024437	0.56265140611016
Merged-chr1-172475316-4	chr1	172474809	172475809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-51.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	5.97527691735029	5.57959856307012	5.72459804448953	6.11020785215959	6.42299130194186	6.06103471263517	0.770078560816151	0.0162176541817046	0.140114065948632
Merged-chr12-70698499-3	chr12	70697984	70698984	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127030.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	4.55555816061316	4.67054858201716	4.47655529856548	4.10799116513129	3.87647927077847	4.41814027569301	-1.16320980492327	0.0160281520675888	0.139039874607999
Merged-chr19-5130691-2	chr19	5130191	5131191	+	744.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12283.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	3.5330778201404	3.53654727155385	3.87177471667828	3.81632702815369	3.99020237051086	4.03351342100368	0.986876120256933	0.0698677368352161	0.346106724211744
Merged-chr17-5935035-4	chr17	5934529	5935529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6251.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	6.80818439588738	6.6686357069901	6.83123110728603	6.647625077424	7.08842071594545	6.83059869969471	0.167844889051003	0.533126669462844	0.852197548492566
Merged-chr11-95347720-3	chr11	95347193	95348193	+	782.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	10675.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	5.8842074985655	5.7102744650457	5.95305738243705	5.5255093897386	5.80421467657034	5.82654040220954	-0.219487104115966	0.49036323499102	0.830042606694236
Merged-chr4-95775724-3	chr4	95775223	95776223	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191312.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	2.80516025758967	2.63644782837322	2.86766490850183	2.94863168067357	2.87634067621347	2.6204645405329	0.283767859476638	0.70673575966789	0.92312872377197
Merged-chr11-86993329-2	chr11	86992829	86993829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 1 of 4)	CpG	433.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.46841194814539	6.638983085291	6.49451127153806	6.4584264400667	6.52583728920795	6.30515995087275	-0.158167117209341	0.556269424528982	0.86357390983939
Merged-chr15-83039543-1	chr15	83039043	83040043	+	545.0	f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6146.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	3.94113745411895	3.51969875686372	3.95652367237062	4.31006271601224	3.73044198146531	4.02618653065195	0.676294597810322	0.237362011169595	0.633757483808228
Merged-chr19-34283831-1	chr19	34283331	34284331	+	587.0	f0_c57.idr	Intergenic	Intergenic	-6828.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	2.86911003631508	2.90612566330969	2.84060261442229	3.61597286151304	3.55705073421056	3.18666949188996	2.76735273412948	0.000199854391903091	0.00501492287137287
Merged-chr2-49733863-6	chr2	49733256	49734256	+	774.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53930.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	4.3014738350546	4.63329211522452	4.65475831666654	4.70329832579949	4.8878121308289	4.5991422490194	0.496209432618633	0.249770299880265	0.646852801975018
Merged-chr10-68721196-4	chr10	68720697	68721697	+	920.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.38446554922385	3.32997772371812	3.46101131709567	3.47739311384536	3.69565397524293	3.83589079694329	1.03458115153648	0.0754999424387438	0.361752804931648
Merged-chr15-101134533-4	chr15	101134033	101135033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 3 of 11)	intron (NM_001277255, intron 3 of 11)	6011.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	6.69234449706607	6.11200622761023	6.31137122655641	6.22322923341276	6.25671760406921	6.51751303772668	-0.109140066637052	0.726188208697633	0.929753323116059
Merged-chr8-125620455-3	chr8	125619934	125620934	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35796.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	3.51262638488447	3.44800705075588	3.59539769122328	3.28197479184882	3.41463058500549	3.34179236950046	-0.635593353452404	0.283295888314013	0.681215891353649
Merged-chr17-46751168-2	chr17	46750668	46751668	+	956.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	1046.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	6.64091124675495	6.4636888180564	6.57054103859353	6.67138537474922	6.67079874082277	6.74287514970182	0.211916980259079	0.409024849025908	0.782473112145764
Merged-chr12-101740699-4	chr12	101740190	101741190	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-22167.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.41726581879519	4.49167293920464	4.40752326045809	4.42566632046888	4.40987915976352	4.47471679350642	-0.018122720696883	0.966314864777736	0.992300624078119
Merged-chr11-106487014-2	chr11	106486514	106487514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	782.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	6.80898991452691	7.03966638191329	6.57960327609262	6.74683907606097	6.74674281391788	6.75585748604186	-0.131890047586449	0.621775159344624	0.8908398051148
Merged-chr3-52047170-4	chr3	52046669	52047669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57837.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	7.05052070289385	7.39265069816474	6.85084830242097	7.13013982255156	7.45844181569136	6.96959476443077	0.127513202873329	0.656521744612636	0.904656053867324
Merged-chr6-149174156-4	chr6	149173655	149174655	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153963, intron 1 of 4)	intron (NR_153963, intron 1 of 4)	14557.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	4.38820856608601	3.97025954081902	4.67251602592537	4.11291582465986	3.7549941206984	4.59584394038615	-0.456357394514044	0.426906200840484	0.793904265858508
Merged-chr8-117258879-2	chr8	117258379	117259379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	1860.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.47910845098212	6.75457261769995	6.73153434302082	6.92197099744906	6.83753412851041	6.75908624079281	0.289433381283082	0.265043729818695	0.662839771217229
Merged-chr2-34906249-2	chr2	34905749	34906749	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 5 of 14)	intron (NM_028716, intron 5 of 14)	7727.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	5.03767254355219	4.94824372438523	5.3322454169406	4.77866461835442	5.00473140339471	5.21819575999621	-0.211356962896882	0.591422236027653	0.877609255900933
Merged-chr11-3166779-4	chr11	3166281	3167281	+	988.5	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	B3|SINE|B2	26682.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.50375127793689	6.91821011562757	6.83894248697248	5.32539995109168	4.87843704706084	7.38355373124888	-0.522742601114131	0.669045998869552	0.909505510225091
Merged-chr11-32349814-4	chr11	32349319	32350319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	2008.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	4.71127199849812	5.40656449091906	5.1233197059887	5.16781001753255	4.98137649414747	4.93956542355638	-0.172064095974318	0.679313890415849	0.913702054438388
Merged-chr19-56637334-4	chr19	56636847	56637847	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85025.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.24446008587513	3.13249154752939	3.1513766703685	3.08723490453571	2.79970336587108	2.98432954811065	-1.01148292934174	0.140451200633612	0.500760820920022
Merged-chr17-87275541-4	chr17	87275025	87276025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	7289.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	6.23745782616716	6.11740926044099	5.82671901904037	5.59052870081183	5.48854350630797	5.28830017870662	-1.10420692948037	0.000812726632188749	0.0153456515985155
Merged-chr5-140702952-2	chr5	140702452	140703452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	-574.0	NM_001347517	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	4.66478554128081	4.46781033844531	4.63887262588505	4.3948055277479	4.63104052283697	4.11245223114308	-0.444257998429196	0.342075957450355	0.731144522669641
Merged-chr12-83594864-3	chr12	83594364	83595364	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183154, exon 2 of 12)	exon (NM_183154, exon 2 of 12)	2358.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	3.81862070501339	3.57506526068501	3.79876935903207	3.86190611412313	3.7217890063392	3.81787315146664	0.218565582130157	0.682924770756005	0.91523316791368
Merged-chr7-19872656-2	chr7	19872156	19873156	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11357.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	2.70023047320781	2.69694214581605	2.64401707304821	2.98485410634601	2.88686092363308	3.08671974944741	1.55954386389927	0.0341021997119842	0.225903656845377
Merged-chr5-90900935-4	chr5	90900440	90901440	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2959.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	4.16102163660171	3.85916137872054	3.77164964508335	3.99755973585747	3.64077987482714	3.78913789399693	-0.411487087853449	0.451799440108144	0.809245753174589
Merged-chr9-99243364-4	chr9	99242862	99243862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023873)	promoter-TSS (NM_023873)	21.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	6.88966990362426	7.27585112690706	6.73189995358208	6.97992615817379	6.9175749093347	6.67319117723673	-0.195236336329812	0.489324427863111	0.829595285022794
Merged-chr17-34897699-2	chr17	34897199	34898199	+	862.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147151)	promoter-TSS (NM_147151)	-793.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	4.23066200969435	4.10664961001062	4.44369879501956	4.39942552429104	4.39165753936849	4.24940830143016	0.253809376191993	0.580990238446222	0.873185386905448
Merged-chr17-21650079-4	chr17	21649513	21650513	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-598.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	5.66619666841437	6.10272773948229	5.78665061060113	6.07613077020301	6.30611191929001	6.02215928881072	0.477048462457661	0.134583736526388	0.490430403023745
Merged-chr4-101742204-4	chr4	101741726	101742726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24819.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	7.20300332333075	7.28214324321528	6.98221288137531	8.3399890351751	8.51119599465769	7.75628443399601	1.55616050523032	2.4463728457785e-08	2.03354437314223e-06
Merged-chr2-148393326-4	chr2	148392846	148393846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2031.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	3.30273726448164	3.31487889603237	3.21610964952535	3.24378401109448	3.32063732513189	2.90673140475139	-0.426274695837083	0.535670620143704	0.853668337370661
Merged-chr5-123683846-4	chr5	123683300	123684300	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	CpG	561.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	7.88836561206505	8.10790449810989	7.74360405113857	7.99194204787106	7.52526928608821	7.64439982621556	-0.27265150987736	0.281254991878299	0.679387396944016
Merged-chr11-94611605-4	chr11	94611118	94612118	+	835.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9832.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	6.13306485122803	6.26530605201011	6.44867130694705	5.87939301096998	6.07364735831918	5.75687783297337	-0.613778363648315	0.0440008862434031	0.263910166693656
Merged-chr12-80790453-4	chr12	80789944	80790944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178682)	promoter-TSS (NM_178682)	-88.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	8.19548450321505	8.28876613495939	7.92051278279846	8.0849697643227	8.15986964811069	7.88699767090459	-0.135879803777641	0.5553800393248	0.86322787018872
Merged-chr3-158062328-4	chr3	158061835	158062835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25653.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	6.10979086362659	6.07816978546065	6.00633034973014	6.21284564909344	6.56623868436292	6.20221530719827	0.472086028148754	0.108416585833684	0.439865944548625
Merged-chr9-114592490-4	chr9	114591969	114592969	+	930.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 18 of 19)	intron (NM_153585, intron 18 of 19)	-28100.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	2.33465109059754	2.43397807483499	2.29224528270165	2.60681952490316	2.29930143204928	2.56594345493491	0.852065820177151	0.313632931158458	1
Merged-chr15-72810129-4	chr15	72809679	72810679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	145.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	7.38251863183289	7.88644783476214	7.63128668838855	7.42139838849337	7.94690045526622	7.53385476501047	0.0150781596083218	0.956507152675818	0.989887454023164
Merged-chr3-31095007-4	chr3	31094532	31095532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-26.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	8.43021942352919	8.01951764448405	8.25820487389979	8.41581055858985	8.09194234775102	8.01252186356122	-0.0833915231331906	0.732156439603259	0.931715588770791
Merged-chr8-116947102-2	chr8	116946602	116947602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3709.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	6.34407239242822	5.87896103659538	6.42485806737878	5.93675966760821	6.06162414413258	6.26517733045006	-0.239165258912868	0.45519335030511	0.810850567748235
Merged-chr6-115847210-4	chr6	115846711	115847711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010774, intron 3 of 7)	B3A|SINE|B2	6130.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	5.77395678329878	5.65137115667794	5.51542898780455	5.38859977837432	5.70851750858843	5.98045613651339	0.0932126272558149	0.787562795510286	0.94877064431094
Merged-chr1-36078490-2	chr1	36077990	36078990	+	566.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	10090.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.51769144064394	5.42410144135469	5.69736920204504	5.36754702915601	5.16576532639239	5.52385418591699	-0.378267415489807	0.275022357467595	0.672401372506524
Merged-chr11-23768056-4	chr11	23767562	23768562	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2908.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	5.9374797415149	5.62868306778942	5.76663495662692	5.91132889310357	5.87335776616995	5.92707286134208	0.209369539949275	0.496915889322991	0.833355041868306
Merged-chr12-116405956-2	chr12	116405485	116406485	+	829.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	583.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	5.19143593960195	5.24189625270531	4.7577553274872	5.15319006319465	5.11445943469422	4.94770259879695	-0.0324511649772834	0.933863123629605	0.985627270998404
Merged-chr5-148494791-4	chr5	148494296	148495296	+	794.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56877.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.20959573340752	6.01463727819391	5.91812479765732	5.91460903020179	5.84891039861003	5.80284570258501	-0.352680905812333	0.239841970731624	0.636770540094307
Merged-chr5-140510357-2	chr5	140509857	140510857	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	HAL1|LINE|L1	4748.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	2.44365766921103	2.43239381423479	2.63668978410821	2.24555067581118	2.20267176556259	2.33530811017108	-1.68637652612492	0.0534456455464546	1
Merged-chr10-128778546-2	chr10	128778046	128779046	+	985.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12364.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	6.56981148968842	6.88234353954597	6.75835063679187	6.42005632328521	6.51993436705127	6.81679796999797	-0.245871369363765	0.376250527515271	0.759106102843962
Merged-chr5-142444293-2	chr5	142443793	142444793	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	B4|SINE|B4	-19638.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	4.18540989640077	3.99410216915337	4.2957418025003	3.58721689098182	3.59100950664548	4.43932073877988	-0.649447429292752	0.289748857300957	0.687430963346381
Merged-chr4-59807841-2	chr4	59807341	59808341	+	693.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	MLT1F|LTR|ERVL-MaLR	2191.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	5.55369103224943	5.85606357610083	5.43206819378134	5.40800269828714	5.17841965073898	5.27197312311999	-0.67374931948795	0.0545313472671357	0.299897180661191
Merged-chr12-111442560-4	chr12	111442063	111443063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-98.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.47030201083802	8.40697221213322	8.07591159967772	8.04168454621969	8.52679921230745	7.99596360956833	-0.159040397308386	0.539467233805814	0.855922309330223
Merged-chr3-15848577-4	chr3	15848056	15849056	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173459)	promoter-TSS (NM_001173459)	-69.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	5.76132647185497	6.48182610466523	5.42603925901841	6.1768355573972	6.12284968601339	6.12148949038727	0.264682753970557	0.497707788569237	0.833770467452658
Merged-chr5-100566974-4	chr5	100566467	100567467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	5238.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	6.2934336385671	5.6340946141751	5.86493730579323	6.86639755612706	6.73237906607316	6.32368865304714	1.14972969982589	0.000712334051938868	0.0138421045758359
Merged-chr9-107771112-4	chr9	107770597	107771597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148930)	promoter-TSS (NM_148930)	-95.0	NM_001359525	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	7.82356427042242	8.29544947166023	7.80506868093199	8.04797683805988	8.21316818760858	8.02853214797187	0.140692543112195	0.570538323104219	0.869220609141201
Merged-chr11-99231413-2	chr11	99230913	99231913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020618)	promoter-TSS (NM_020618)	-396.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	4.57210446073881	4.73587641380335	4.72117306056846	4.89339885681517	4.54049246796207	4.58453664559202	0.0123018068204693	0.976598821537388	0.994723308989508
Merged-chr9-65534151-2	chr9	65533651	65534651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45936.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.66840473389654	7.59169485653864	7.59433234127995	7.26495635426572	7.75587493356043	7.41942191298044	-0.16527976506239	0.508021539117188	0.839550861029232
Merged-chr11-4202582-4	chr11	4202081	4203081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	B3|SINE|B2	-15670.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	5.3863600515678	5.80914178624204	5.35186213634545	5.4380932043639	5.49279878733528	5.35165204874668	-0.211210004402226	0.550626584508469	0.860709619458349
Merged-chr1-55822777-4	chr1	55822239	55823239	+	747.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108502.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.37316515590815	4.81732713568582	4.7045993825629	4.18446898600829	4.29719913995519	4.45350798746426	-0.842196606615404	0.0652612954731095	0.333024389037881
Merged-chr10-122678774-4	chr10	122678229	122679229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106182)	promoter-TSS (NR_106182)	-33.0	NM_176919	319468.0	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	8.47350422135397	8.27912261706325	7.6988195350265	7.98875225629156	7.87062267980134	7.58674354591462	-0.521817557655697	0.0634096938398668	0.328009896527061
Merged-chr4-6453053-4	chr4	6452539	6453539	+	937.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1232.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	7.63526299875683	7.90696808221406	7.58673766362895	7.73324819176673	8.21424316719444	7.80771974556552	0.317411708012793	0.214416036940143	0.607538973573768
Merged-chr12-86948381-2	chr12	86947881	86948881	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	1038.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	4.32239969811188	4.64396990022182	4.23335518782243	4.22453966120367	4.05867295098231	4.39177923034515	-0.525847502701922	0.2710001240278	0.668228724851242
Merged-chr18-54937920-3	chr18	54937429	54938429	+	947.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	52251.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.36383333781683	3.39157026024258	3.28088702577301	3.08255890299254	3.13466767479859	3.11711936263211	-1.00063535075098	0.114387059818026	0.451685576752956
Merged-chr3-60580098-4	chr3	60579588	60580588	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	RMER10A|LTR|ERVL	78909.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.93206465413801	5.99287066066936	6.00655890335765	5.59701958654461	6.08185494787031	5.77701542398748	-0.226928664273494	0.479795514258659	0.824391932626821
Merged-chr15-78564262-2	chr15	78563762	78564762	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 5 of 6)	intron (NM_009008, intron 5 of 6)	8521.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	3.10610821487563	3.43049576200426	3.39582823523877	3.32107638694008	3.4150138517137	3.57153731226961	0.455916856673883	0.463425037304005	0.8158640892401
Merged-chr4-129061535-2	chr4	129061035	129062035	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	B1_Mur3|SINE|Alu	3264.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.97773434143236	4.62747155315133	5.14164703244026	5.25402496221604	5.07448591204344	5.10708880971394	0.478873212685994	0.22449937645098	0.619327104161963
Merged-chr2-181548419-4	chr2	181547900	181548900	+	867.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 4 of 5)	intron (NM_001271584, intron 4 of 5)	27915.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	3.39672982797346	3.28066524765431	3.56035749268743	3.28244337446972	3.13222668649057	3.6294771398378	-0.21858777575049	0.731563967649362	0.931462022312867
Merged-chr10-116951141-1	chr10	116950641	116951641	+	637.0	f0_balb.idr	promoter-TSS (NM_001003950)	promoter-TSS (NM_001003950)	579.0	NR_038026	71086.0	Mm.214134	NR_038025	ENSMUSG00000112627	4933412E12Rik	-	RIKEN cDNA 4933412E12 gene	ncRNA	5.01067034625961	4.89197086445982	4.81490658947575	5.47937762334551	5.23225352738097	5.1443078921517	0.797396824525551	0.0326484542613223	0.219967726532758
Merged-chr13-40938584-1	chr13	40938084	40939084	+	846.0	f0_balb.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	20950.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.51555204561177	4.09285399443537	4.16215148045048	4.25400076398385	3.78728650686612	3.63344604082889	-0.999150447318822	0.0798144505493388	0.373590494619515
Merged-chr2-155826703-4	chr2	155826200	155827200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010579, exon 1 of 6)	5' UTR (NM_010579, exon 1 of 6)	225.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	6.78252265539971	6.96505793282243	7.07205993756754	7.19584430773263	7.23131702024695	7.32844759171742	0.47036281769551	0.0535577295973725	0.296798638983561
Merged-chr3-121330381-4	chr3	121329867	121330867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38627.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	4.38278181133801	4.42987587817761	4.27842278868606	4.54331488023503	4.62292891679391	4.43900694527495	0.436472744174031	0.313976506928531	0.708376289358925
Merged-chr10-81360870-2	chr10	81360370	81361370	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 2 of 9)	intron (NM_028657, intron 2 of 9)	3379.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	2.86569441486768	2.60243806513638	2.97193905292082	2.62336470995474	2.52676117526753	2.68845615319158	-1.13783978067893	0.142969473011543	0.504718027592043
Merged-chr10-81402324-1	chr10	81401824	81402824	+	1000.0	f0_balb.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7251.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	6.82260227736159	6.55696859082013	6.51734434082753	6.74389119510856	6.71751324585331	6.64599444173464	0.0943414338538622	0.720879155457853	0.928324696220711
Merged-chr8-94838382-4	chr8	94837890	94838890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026452)	promoter-TSS (NM_026452)	-27.0	NM_026452	67914.0	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	8.34801096043922	8.67076473302799	8.15651759690602	8.16489739260292	8.39573084565807	8.2716652970656	-0.18590063528042	0.435375323494091	0.799001636162842
Merged-chr18-66478318-4	chr18	66477839	66478839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19735.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.18081444197628	7.11205535636177	7.22141641444565	7.33312096252956	7.41890940367273	7.18217797561076	0.226866035686858	0.334032879962807	0.724748007849347
Merged-chr3-119779407-4	chr3	119778891	119779891	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	L1ME2z|LINE|L1	3997.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	5.31815613988569	5.41960887033085	5.57880386642134	5.53816654314115	5.27834298332029	5.35365800009847	-0.0845663838077693	0.805249965897837	0.953809918608747
Merged-chr8-61579012-4	chr8	61578539	61579539	+	860.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	12130.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.28532536850015	4.1585906843067	4.51813114907364	4.63958049087933	4.49200483757803	4.77341216508217	0.793157848823586	0.0751389744718279	0.360971809932683
Merged-chr1-165640439-2	chr1	165639939	165640939	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.52152826822872	5.15194331108509	5.53560832458846	5.18419810600923	5.75920183862725	5.75257574513868	0.348587719581962	0.356591535677398	0.743348418397567
Merged-chr11-115048457-4	chr11	115047952	115048952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199201).2	promoter-TSS (NM_199201).2	-157.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	7.93189743400317	7.95881446825302	7.53403832196548	7.44445420156104	7.43442414197265	7.09468029141696	-0.707998234641926	0.00578042989272388	0.0678865427015933
Merged-chr7-35318369-4	chr7	35317847	35318847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026181)	promoter-TSS (NM_026181)	93.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	3.90583245993718	4.14574647213404	3.97641869024472	4.09216943760561	3.89879087986475	4.0454614259225	-0.019020266927611	0.969589339429279	0.993187203841286
Merged-chr10-80848738-3	chr10	80848237	80849237	+	992.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-4698.0	NM_001013758	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	2.31958328834216	2.21618212040466	2.39052172243372	2.22361454600951	2.05076002054974	2.20499050220112	-1.08208207231731	0.22558907011461	1
Merged-chr3-96564419-1	chr3	96563919	96564919	+	603.0	f0_balb.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	2382.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.54626657444642	6.60102780619076	6.71812853492961	6.70364191022617	6.73354225387738	6.50868654139102	0.0650367388411397	0.802993622018562	0.953422605427866
Merged-chr7-25685601-2	chr7	25685101	25686101	+	773.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	-1401.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	3.72960207838749	3.68932749821585	4.15062090684229	3.79882126222254	3.61096203429031	3.95927734277025	-0.241522217506744	0.666413143574764	0.908152849712065
Merged-chr2-154890276-3	chr2	154889783	154890783	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	2623.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	5.45279174048639	5.42035548241696	4.7709529980772	5.24582537510485	5.14021247956005	4.96509242727118	-0.280572710447082	0.493469547576905	0.831321147448556
Merged-chr13-13553863-4	chr13	13553371	13554371	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-36538.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.03254062379793	3.20059370900437	2.79570371571308	2.99833285654969	2.89806917497484	3.11554054385363	-0.107924286843865	0.879922117213703	0.97233146785017
Merged-chr5-66107901-2	chr5	66107401	66108401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	MTC|LTR|ERVL-MaLR	-9722.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.85033190743051	5.65552048181685	5.77420273649473	5.53078040541362	5.79071556976906	5.90783686508174	-0.0230328974036015	0.942733180170503	0.987202156853573
Merged-chr9-64740842-4	chr9	64740322	64741322	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.48666792486129	4.16223091956107	4.05009630156034	4.26824775314256	3.98576672794214	4.16947916927425	-0.308966456284437	0.532699204876859	0.851971173271146
Merged-chr1-155412910-4	chr1	155412417	155413417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	4527.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	6.17104970779339	6.16131800141711	6.0875117317611	6.28121902179454	6.15137645183177	5.88391058595827	-0.0309580881718482	0.916222478333352	0.981243905880233
Merged-chr11-97660417-4	chr11	97659921	97660921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2991.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	9.08929201484207	8.70091011347939	8.63722234417231	9.01935523019092	9.00060793838184	8.71210710053185	0.126204683362888	0.590914351904524	0.877301111216348
Merged-chr7-16167605-4	chr7	16167124	16168124	+	884.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-7771.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	2.95217656068183	3.08687419401524	3.12954009949514	3.20009074798477	3.33640197818781	2.95558839860369	0.542521700969793	0.42351322439083	0.792050429285735
Merged-chr8-66444384-4	chr8	66443898	66444898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	42132.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.25490170799856	5.23117099089907	4.92312077573411	5.27183416992761	5.05936515478983	5.10051982000479	-0.0205992630864325	0.95571766982753	0.989783387008628
Merged-chr14-63106407-2	chr14	63105907	63106907	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16055.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.9586618530604	3.7095524721446	3.83140965938253	3.58162149928593	3.27801092763182	3.69948951110151	-1.09535815013754	0.0615635303779084	0.321891305497361
Merged-chr10-80157292-2	chr10	80156792	80157792	+	665.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7610.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	3.66087312448605	3.47911533787594	3.88321221135122	3.92972209547797	3.61724544115636	4.29530724471961	0.91578462779342	0.11867289067226	0.460372692762245
Merged-chr3-30847704-4	chr3	30847208	30848208	+	876.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8242.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.48481478102982	3.43123616298159	3.64627116807789	4.11485552185373	4.32916405681223	3.66275365528029	1.82591648558824	0.00166890652816219	0.0268496470215234
Merged-chr5-65493393-4	chr5	65492882	65493882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-547.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	7.77348494160141	7.59371705132347	7.38672672866304	7.42103646313055	7.4725946450025	7.30745095397167	-0.285005325580903	0.234132387772082	0.63036877369004
Merged-chr8-36993575-4	chr8	36993059	36994059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039220)	promoter-TSS (NM_001039220)	-16.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	6.15597407375116	6.39285330848578	6.15573288165427	5.598509774399	5.85128171768549	6.08918232365291	-0.672217403444287	0.0317674512681394	0.216150804189643
Merged-chr11-114858844-3	chr11	114858346	114859346	+	776.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	6816.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	2.88084155323727	3.04464172027339	3.16687249268369	3.00733701734089	3.00326042451729	3.00816744144781	-0.115224757572187	0.864204674797952	0.968269312109804
Merged-chr5-66082365-2	chr5	66081865	66082865	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	15814.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.02307636260375	4.85442228584944	5.35983935699692	5.37353860454704	5.24042378460778	5.07207228565223	0.322711992128895	0.400669150403642	0.776924744715187
Merged-chr11-80194638-2	chr11	80194138	80195138	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 3 of 4)	RMER19B|LTR|ERVK	10766.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	2.92189532367604	2.97576201139433	2.74253920489052	2.84132979766159	2.76349371592755	2.94006233390901	-0.213565130819528	0.765475372051164	0.942148336413151
Merged-chr2-167717428-4	chr2	167716971	167717971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26294.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.33292116260302	7.07897339164929	6.69931739474865	6.8626278941429	6.88715539225554	6.35742774050551	-0.516209547317642	0.0946559199609113	0.410136490273995
Merged-chr6-30403680-4	chr6	30403196	30404196	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311087, intron 1 of 8)	intron (NM_001311087, intron 1 of 8)	1841.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	3.90223257593347	3.89979881351375	3.89443956054607	4.09261719665822	4.09505766250117	3.91316495964635	0.430688956087132	0.385474187427791	0.766526531581388
Merged-chr7-142342374-4	chr7	142341870	142342870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	L1MB3|LINE|L1	29889.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	5.01739892573389	4.76785913379122	4.9334991951566	5.98134382721637	6.29455097948754	6.41761122609515	2.52533454791298	9.06613182361982e-13	1.73419470524082e-10
Merged-chr17-37027804-2	chr17	37027304	37028304	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4406.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	3.70595270655387	4.10976896987338	4.16016280508399	3.81237529777566	4.32315087202633	3.94344832398706	0.143343289328281	0.795736909090558	0.951283863759945
Merged-chr3-146445024-4	chr3	146444529	146445529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5438.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	6.46134158735365	6.20107054834673	6.19011167770472	6.27007409509773	6.25246314752402	6.46305298056439	0.0493570391885427	0.862166958836011	0.967996224966109
Merged-chr7-73451830-4	chr7	73451332	73452332	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081345, exon 33 of 39)	exon (NM_001081345, exon 33 of 39)	-76058.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	4.05330684828854	3.92880853309073	4.0253889591133	3.59280982402026	3.48682592188077	4.18042073485442	-0.689329254545446	0.237688750384602	0.634225619096145
Merged-chr3-90000784-2	chr3	90000269	90001269	+	663.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165984, exon 28 of 28)	3' UTR (NM_001165984, exon 28 of 28)	2009.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	5.66337808014724	5.18306811335545	5.49620314038455	5.5879539662383	5.53121170843541	5.64174369801884	0.232371871233644	0.503528923878758	0.837065404633163
Merged-chr16-33251546-5	chr16	33251083	33252083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080557, exon 1 of 14)	exon (NM_080557, exon 1 of 14)	127.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	8.42576001171505	8.60892442159829	7.8724076520903	8.16565401448849	8.09031319710557	7.69141074267212	-0.481015313332325	0.0866321545567819	0.389886736477152
Merged-chr3-95135846-4	chr3	95135361	95136361	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1773.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	5.89415101037619	6.30180328727415	6.27809109584804	6.58315106044081	7.06107035098466	6.37882835649254	0.89093410072016	0.00605440867780574	0.070241946076807
Merged-chr4-97758143-4	chr4	97757633	97758633	+	824.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-19493.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.09807677711871	6.27725274493042	5.93343637475464	6.05480191848842	6.44590894382707	6.04365131469079	0.150066700395875	0.630450683977586	0.894734411238057
Merged-chr1-131294177-4	chr1	131293696	131294696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14633.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.08200683366042	3.91497606897033	4.08356782542652	4.04015679254428	3.84703324226083	4.19623204995044	-0.00236203223171199	0.996244629544741	0.998961028701257
Merged-chr11-106273047-4	chr11	106272538	106273538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-66.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	6.8498333982777	6.84212910064629	6.80668562857778	7.03456499550055	6.85960991863832	6.78842306876266	0.102996597283041	0.678704429636138	0.91354683395069
Merged-chr14-25473167-4	chr14	25472720	25473720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14035.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	8.56835479916803	8.64582406689111	8.24464352403082	8.32096050143923	8.77316883065694	8.02737771187569	-0.112249524658853	0.681478354140862	0.914693263933768
Merged-chr16-55969324-3	chr16	55968822	55969822	+	921.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 3 of 5)	B1_Mm|SINE|Alu	3047.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	3.39440184448386	2.90727354077397	3.30953655559056	3.14906582278039	3.22715233176684	3.58760796414318	0.436012522606634	0.529743352832128	0.851048470960073
Merged-chr4-43001834-2	chr4	43001334	43002334	+	675.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163233)	TTS (NM_001163233)	-1327.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	2.76823367019952	2.66210846280111	2.7688339733487	2.78915549372467	2.64242512845909	2.84180016853259	0.12321939675239	0.865884552132465	0.968641478520565
Merged-chr5-105615179-2	chr5	105614700	105615700	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84769.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.20258068649779	5.17553110830863	5.06634640728137	5.09412828866631	4.47949489270574	4.71318855618788	-0.797787555909306	0.0556764793352699	0.303665999772492
Merged-chr17-10370708-7	chr17	10370192	10371192	+	996.517883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46090.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	6.59746747113678	6.50916830765077	6.50386571630537	6.10787053485476	6.32238655413156	6.23980928078187	-0.505587719267792	0.0630907851840024	0.326907949316868
Merged-chr19-8984570-4	chr19	8984084	8985084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4700.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	6.3353602812003	5.80252665799551	5.85071726350273	5.5413384823199	5.88699709209799	6.05196344149565	-0.325186234914228	0.351781653296564	0.739445861272404
Merged-chr13-103918600-3	chr13	103918101	103919101	+	743.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1985.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.88842757048788	6.12591008029569	5.98978318234364	6.44184259599009	6.66973552407433	6.1668363158078	0.747837729891385	0.0134371603459885	0.123411348720628
Merged-chr4-147809799-4	chr4	147809303	147810303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127189)	promoter-TSS (NM_001127189)	-15.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	6.37957751463217	6.47033955648347	6.94782161042661	7.18843843384844	6.98925304127819	6.99270745650706	0.697135283886565	0.0142152019002423	0.128083720269613
Merged-chr2-122154085-4	chr2	122153605	122154605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	6418.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	4.70732553127568	4.91098875167347	5.13020731374524	4.9653512329481	4.94637898424855	5.39774849704334	0.40731656690746	0.315381484596847	0.709692649130764
Merged-chr3-105841747-4	chr3	105841254	105842254	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	26187.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	5.21062651699495	5.35514577629598	5.36249676024822	5.48395703773194	5.35373401972995	5.48440588054626	0.252586838203855	0.454224421010263	0.810104016757399
Merged-chr10-44456859-2	chr10	44456359	44457359	+	998.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_007548, exon 2 of 7)	exon (NM_007548, exon 2 of 7)	1889.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.63304229353516	5.78732412664876	5.89012460025142	5.40259765490831	5.63422155137833	5.57064320018362	-0.417635076862991	0.197669093701167	0.585805105555675
Merged-chr5-44052758-3	chr5	44052271	44053271	+	916.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	41997.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	3.86801362168152	3.54535060254445	3.94351723347661	5.22320009645507	5.21892893288146	4.53474512235493	3.46562891099122	3.67276365069951e-10	4.33479883471496e-08
Merged-chr16-16983336-4	chr16	16982838	16983838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011949)	promoter-TSS (NM_011949)	-44.0	NM_001357115	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	7.83341952698082	7.86683401794677	7.2857459375824	7.63403403261662	7.23776337834248	7.30727745091533	-0.424676985792303	0.123983466742429	0.471278757298044
Merged-chr8-61553866-2	chr8	61553366	61554366	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	37303.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.39935696027012	3.54488789020697	3.60117759821622	3.41893696023092	3.60180324740091	3.45654464872931	-0.0531522557967687	0.9269831136171	0.983578869536024
Merged-chr4-130787721-4	chr4	130787180	130788180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.51312480944929	6.33427841289987	6.63561730493967	6.63059034270971	6.79663903318928	6.35207815668725	0.199041421561808	0.484123243689343	0.826672553528757
Merged-chr4-32369157-1	chr4	32368657	32369657	+	748.0	f0_balb.idr	Intergenic	Intergenic	-48278.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.25427041412405	3.0662133103559	3.16151758615439	2.59090743733977	2.70006578411695	2.88040510431802	-2.3302825070534	0.003060311411293	0.0427252335420919
Merged-chr9-100433076-2	chr9	100432576	100433576	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	53397.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.14902328342329	2.15415757957629	2.37221072788803	2.14309979931102	1.89586416339153	2.50817225592465	-0.111606981239124	0.912440038743553	1
Merged-chr15-59048218-2	chr15	59047718	59048718	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33808.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.0393145416993	2.93244979052247	2.86868875537819	3.16292826284482	3.0242383068201	3.06575452301655	0.612511355437425	0.364727486474843	0.750028369485675
Merged-chr15-59647661-4	chr15	59647154	59648154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-1000.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.87724697475554	8.11477693877378	7.92807721665017	7.94808440538096	8.14406429436549	8.07278175606061	0.112356632769172	0.608694812923438	0.885006356798728
Merged-chr1-64199047-4	chr1	64198537	64199537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77648.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.76044380751996	6.77961113409525	6.83997155393382	6.96073134399875	7.20452903474253	7.16361661074956	0.49647820038754	0.0436217487634381	0.26245390679205
Merged-chr12-108937046-4	chr12	108936544	108937544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42772.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	6.89032567946353	7.06758090060066	7.24911470656958	7.02097511833126	6.52671175581816	6.72554823741087	-0.461951763116843	0.0989293309284321	0.419390793099336
Merged-chr8-124857248-3	chr8	124856778	124857778	+	981.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025615, intron 2 of 6)	MurERV4-int|LTR|ERVK	5751.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	5.68240068546552	5.35963870742071	5.62345668298795	3.89136660044336	3.63093215977829	4.17584991407484	-4.87369195604194	1.57995618710258e-15	4.76322443537795e-13
Merged-chr17-84957798-4	chr17	84957289	84958289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	-79.0	NR_027930	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	7.71417565594756	7.6525090660135	7.51861923646318	7.69336400598022	7.81772238258832	7.60485093166408	0.113281774451408	0.614108335512291	0.887411760755953
Merged-chr11-70498811-2	chr11	70498311	70499311	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6463.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	7.23862627309252	7.23721345098383	7.29177589377389	6.98840830904027	7.12873397860127	7.04560553643097	-0.294808942134051	0.207138670318619	0.597920729067479
Merged-chr14-30672118-4	chr14	30671599	30672599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17724.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	6.08217893651325	5.56920344022798	5.75007160263749	5.62088891807512	5.40237775034846	5.78661322211802	-0.401312582220828	0.248996955025193	0.64596054853577
Merged-chr16-30872693-2	chr16	30872193	30873193	+	876.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208739.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.31473435672493	4.06698027450912	4.20362912669418	4.01559194681426	4.28621112367311	4.3156115812174	0.0378849884354879	0.936872255394438	0.986037792257163
Merged-chr19-60820569-2	chr19	60820079	60821079	+	681.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	9024.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	5.64860768263656	6.26883946079351	5.98700387624841	5.83511686126348	6.10958316796045	5.85534946079637	-0.0883100843282017	0.794130132449931	0.950572181969693
Merged-chr18-34193220-4	chr18	34192712	34193712	+	875.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27772.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.83595096505712	4.04705012126221	3.82519515335997	3.84511749838237	4.15450344335315	3.94714269453443	0.253658222198799	0.624954817371729	0.892311037285785
Merged-chr5-74671654-2	chr5	74671153	74672153	+	996.083374	f0_balb.idr|f1_balb.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	6219.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.24943391650555	3.08623334809228	3.15649348123643	2.75561859636592	2.7798785788719	2.99610224629487	-1.59078794736709	0.0259195184835752	0.19087629825483
Merged-chr18-31789079-4	chr18	31788571	31789571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357480)	promoter-TSS (NM_001357480)	-54.0	NM_001357480	69241.0	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	6.10712829186247	5.91625157891725	6.18945613590708	6.0356097377159	6.08207015611025	5.83943709885622	-0.122332286202256	0.683014445626854	0.91523316791368
Merged-chr1-151429452-2	chr1	151428952	151429952	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026876, intron 1 of 14)	intron (NM_026876, intron 1 of 14)	910.0	NM_001357570	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	6.91180191934523	7.47682440100321	7.38197089566452	7.04585447959679	7.16752880909437	7.06651495045952	-0.274044713199666	0.311338370399559	0.706465219571547
Merged-chr7-19072343-4	chr7	19071839	19072839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B1F|SINE|Alu	-3861.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.05957487934486	3.58422933033252	3.79682881821475	4.32984113665624	4.38616652793132	4.22287205629281	1.41137888685641	0.00752890588688982	0.0824187871380513
Merged-chr10-128500284-2	chr10	128499784	128500784	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_131151, intron 1 of 1)	ID|SINE|ID	1037.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	4.59775525022913	4.36939823390384	4.68506700891076	4.47252783706	4.67881854617535	4.89349455541566	0.326128515196273	0.45214657799972	0.809286173636239
Merged-chr2-18608977-4	chr2	18608472	18609472	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63490.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	3.13109257201659	2.73442272516959	2.85277498370838	2.84045370612481	2.9749389999383	2.98747750517795	0.0735134270142106	0.919149513670439	0.981955585515881
Merged-chr14-32168395-4	chr14	32167904	32168904	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	2615.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	7.26933485667941	7.27233237412647	7.13106034668832	7.56166173793729	7.69718481667507	7.27597986321341	0.446620483434934	0.068753940863654	0.343060560768945
Merged-chr19-41914227-3	chr19	41913727	41914727	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	2356.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	4.82105959610627	4.6592670705949	4.65149553673299	4.53018991598327	4.29606221380495	4.42225899125757	-0.739904066215734	0.0821962251236716	0.379123019025808
Merged-chr7-100504101-2	chr7	100503601	100504601	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 6 of 7)	intron (NM_153527, intron 6 of 7)	10714.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	4.98729593114484	5.14255440051157	5.24700591936089	5.42968578849937	5.4688955235044	5.74860343272812	0.841425096184583	0.0171215066612265	0.145624176611049
Merged-chr9-53535587-2	chr9	53535087	53536087	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007499, intron 1 of 62)	intron (NM_007499, intron 1 of 62)	1084.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	4.07496970277256	4.08100844228954	3.9810667973042	3.97856792505081	4.21614425198298	4.19247724175221	0.244790348489273	0.612915803852371	0.886969289870611
Merged-chr19-31834452-4	chr19	31833946	31834946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-34315.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	3.38397065386932	3.41038618969506	3.54134366890883	3.48717753326574	3.17407183545457	3.94206000915876	0.437055348760622	0.50009728035968	0.834921806675451
Merged-chr2-90455051-2	chr2	90454551	90455551	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 11 of 23)	ORR1D1|LTR|ERVL-MaLR	24123.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.43671301682635	2.25905744477873	2.63244062125053	2.28814489832177	2.15528916424368	2.46276769808285	-0.934951189169167	0.289023361519452	1
Merged-chr19-57571948-3	chr19	57571453	57572453	+	695.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-39081.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	2.65377406486382	2.81166803730069	2.89425105973264	2.9365007963695	2.67104143519389	2.9668229733376	0.366326458984209	0.617964566080097	0.889069638978004
Merged-chr5-99227759-4	chr5	99227321	99228321	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	25106.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.27830034784526	4.17501227010899	4.18482114986911	4.27235562482386	4.32412082087982	4.20630403815688	0.157603825212367	0.729821212776217	0.930635866770147
Merged-chr8-105606706-4	chr8	105606193	105607193	+	964.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	1464.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	6.09658981048218	6.21187024237953	6.17797776274856	6.02910118369829	5.97067641844506	5.79301840836904	-0.379884985332101	0.19267532985503	0.579656115647455
Merged-chr11-118240140-2	chr11	118239640	118240640	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	8452.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.78993280780955	5.5787419315953	5.96632912902581	5.84297715331406	5.9459767394692	6.02691654629129	0.286331291404096	0.360442090589131	0.746659056056839
Merged-chr17-29371200-4	chr17	29370701	29371701	+	987.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10287.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.82011651865543	3.62143715679732	3.97185935357671	3.85605011070203	3.46721439177154	4.08411092008343	0.037440957731878	0.948641316708317	0.988151190239158
Merged-chr14-74908486-4	chr14	74908001	74909001	+	964.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	39376.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.69663117074836	3.49767678331173	3.91860660635401	3.69996752882165	3.79547431164505	3.79453787237312	0.191305373460265	0.728928682991597	0.930478966998914
Merged-chr16-57558404-4	chr16	57557879	57558879	+	947.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9137.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.41612237649192	6.50810052308201	6.19272626313578	6.41162606231504	6.42935189558972	6.20994223704859	-0.0444463590446685	0.874497555017742	0.970754540400126
Merged-chr9-101078405-2	chr9	101077905	101078905	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	3643.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	4.60108649917288	4.43670510843394	4.56816803124159	4.70807826662492	4.60533552470053	4.41874672213938	0.131794051290542	0.756643534782488	0.939652679558287
Merged-chr11-69991003-4	chr11	69990511	69991511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019749)	promoter-TSS (NM_019749)	-359.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	8.0828721003423	8.14096605410811	7.93923554181086	8.07352258893243	8.41438300014638	7.65120553841825	0.0502141395707331	0.851589629824236	0.965314553418056
Merged-chr5-150216262-4	chr5	150215772	150216772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43658.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	3.03807344534356	3.01930327255473	2.79297705321843	3.22719984740975	3.19244584971427	3.29799880500203	1.22808738917126	0.077090037786438	0.365994676965629
Merged-chr12-4599950-3	chr12	4599473	4600473	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	6965.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	3.77085983004023	4.05718410875297	3.46233859172243	4.01591137510565	3.64127636802513	3.65740461440169	-0.029286965566729	0.961236747008161	0.990484170413432
Merged-chr7-81346353-2	chr7	81345853	81346853	+	580.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007755)	TTS (NM_007755)	-1119.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	2.63505927668321	2.64403757220024	2.65507378063316	2.48478564141536	2.42793288462544	2.40543908618767	-1.24768171877177	0.119528332787861	1
Merged-chr19-43520545-4	chr19	43520044	43521044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4061.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.08069801902873	6.99284946834757	6.72926275190901	7.18259187694906	7.36973722963765	7.36907995145803	0.53834364455148	0.0321823661659852	0.217883198419513
Merged-chr13-51397310-2	chr13	51396810	51397810	+	619.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11308.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	6.15784349598954	6.29744062184313	5.9601794111006	5.87930358024465	5.79590744492738	5.55989762084057	-0.687117372262267	0.0277566573485141	0.198830801268517
Merged-chr6-120172421-4	chr6	120171933	120172933	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	-21390.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.64712146813651	5.37206675949037	5.20368579142876	4.63760440793834	4.43872334515757	4.52545075094861	-1.98051829035917	8.98541419538188e-07	4.94156209100684e-05
Merged-chr2-129302728-3	chr2	129302223	129303223	+	781.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	5353.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	4.07646668081953	3.99977251054464	4.70769459332185	4.40042206736445	3.86131449527033	4.48232690996588	-0.0584030570217264	0.916506372084361	0.981312252061916
Merged-chr11-83618574-7	chr11	83618095	83619095	+	928.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-25508.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	5.9222335384057	6.25112586235544	6.12713925947763	6.15413495051323	5.7417581264714	5.94004594307851	-0.268950392734142	0.392893097640472	0.771377884930667
Merged-chr1-170898607-4	chr1	170898101	170899101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13061.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	6.5892230672876	6.60022009952298	6.59983323590421	6.63744741940684	6.71328550177882	6.55565959951776	0.0738514369915426	0.772424578146291	0.943716660313239
Merged-chr2-128757355-2	chr2	128756855	128757855	+	668.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	MT2B1|LTR|ERVL	58440.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.601968105801	3.53163084638638	3.78005442381182	3.31299076499428	3.11488261762018	3.55261774169867	-1.17285078702218	0.0599917873096969	0.317073284320274
Merged-chr1-133118357-3	chr1	133117859	133118859	+	667.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12807.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	2.49049870336749	2.4927061808429	2.84324495686846	2.64323001537896	2.45022322779928	2.80007243364751	0.11380350935383	0.887293532830922	0.973836995667151
Merged-chr8-94190029-2	chr8	94189529	94190529	+	759.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10940.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	3.79743033421119	3.74974680700977	3.75142079541217	3.95868224709176	3.70548650508296	3.65994766728455	0.0522048963283179	0.922323961072204	0.982542868764899
Merged-chr6-97179160-4	chr6	97178657	97179657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-33.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	7.95539639445674	8.30635012013692	7.99407402703138	7.96062834003174	7.96553944881592	7.60194630852037	-0.338275872007687	0.165727264629616	0.540863657924297
Merged-chr16-23285198-2	chr16	23284698	23285698	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5272.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.3454178528219	4.22087153267871	4.49890521670011	4.03004075456864	4.23601110694648	3.9877221820071	-0.706949596085746	0.14399757403374	0.506588698903881
Merged-chr3-51333447-4	chr3	51332955	51333955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	7189.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	8.84502682350192	9.21772935898231	8.41021810643202	8.56010512648272	9.04675130471638	8.10300767264864	-0.322481251033785	0.313554646091062	0.708121563861612
Merged-chr4-53469233-4	chr4	53468735	53469735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	L1MB8|LINE|L1	28822.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.19917879287387	3.92268754251148	3.92007883668116	4.16803982413769	3.89766160688417	4.35727908799775	0.344494882541417	0.503921696455928	0.837380929077332
Merged-chr10-78086786-4	chr10	78086278	78087278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17410.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	6.16786147576428	6.01290435928123	6.07182263134607	6.28659078020089	6.0838588629627	6.19687658996356	0.173405399095962	0.543888252448238	0.857551302506722
Merged-chr11-69691537-2	chr11	69691037	69692037	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	4561.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	5.31589580480005	5.32661150287879	5.49896477749493	5.16911974710987	5.07107302838907	5.20537045553007	-0.472300188007421	0.175495024811385	0.555442754830951
Merged-chr2-152333323-2	chr2	152332823	152333823	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	-684.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	4.32898275648337	4.07516667979436	4.26389966466754	4.36229781817913	4.24454481824033	4.45988791642087	0.339887276524923	0.460553665998965	0.814541829243987
Merged-chr12-85109284-2	chr12	85108784	85109784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	5.8011064818029	6.23013455498453	6.35530478519302	6.17786211683256	6.04581743501902	6.05264508438626	-0.0843355080072915	0.788527929035407	0.94895503373255
Merged-chr2-14207014-4	chr2	14206519	14207519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-22395.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.81978213354516	6.08418423826146	5.55083012327832	5.62920052196402	5.61512220664416	6.10582920003335	-0.0970706320813406	0.783594247309091	0.94726085620041
Merged-chr3-9251450-4	chr3	9250980	9251980	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177660, exon 1 of 6)	exon (NM_177660, exon 1 of 6)	913.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	4.46145148550227	3.97250320654162	3.90729162426795	3.78581501169958	3.54004577807407	3.82055198345387	-1.33659141649553	0.0169049567632351	0.144313906058815
Merged-chr12-73322757-1	chr12	73322257	73323257	+	542.0	f0_balb.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	35909.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.98863865633616	2.87688603640621	3.14601529074288	2.93841363885791	2.76375594283065	3.2169487408499	-0.115136455125724	0.871820360696001	0.970261003150518
Merged-chr11-34783179-4	chr11	34782713	34783713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	692.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	6.62592250079464	6.97397565331793	6.69681198581513	6.86293132359977	7.10828452293507	6.65509155523394	0.186762872617718	0.50448182254971	0.837727751066034
Merged-chr2-29624929-4	chr2	29624444	29625444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	5224.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	8.12580479201263	8.27873329335226	7.4935638737131	7.79412600226907	8.07381979769715	7.28978691151241	-0.352284963177185	0.267092921966413	0.664541693358289
Merged-chr5-33936447-4	chr5	33935960	33936960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011914)	promoter-TSS (NM_011914)	-202.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	7.55729086005766	7.57059499117603	7.68093207293381	7.5889252892898	7.32071533475578	7.54406665850646	-0.169644805844695	0.4613783995753	0.814992635038861
Merged-chr16-20718601-3	chr16	20718104	20719104	+	629.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356423, exon 1 of 5)	5' UTR (NM_001356423, exon 1 of 5)	427.0	NM_001356423	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	5.35113604820519	5.52239041021322	5.35866133038614	5.10731847857392	5.73169931339821	5.48229483079133	0.114866657613009	0.756561653704058	0.939629132869937
Merged-chr2-131262449-4	chr2	131261956	131262956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355683)	promoter-TSS (NM_001355683)	-44.0	NM_001355683	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	7.02621509013651	6.98401800903887	7.19494154436373	7.26812012493001	7.12140651258149	7.40455185479846	0.29812839951818	0.222771874942539	0.61771534824776
Merged-chr15-64076696-2	chr15	64076196	64077196	+	879.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-16248.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.38528242743173	6.52038122196444	6.35044760719186	6.37379550306113	6.606257139589	6.4294423123432	0.0891652955361403	0.742872550605485	0.935368371900894
Merged-chr15-81045544-4	chr15	81045034	81046034	+	959.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	59513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.86892562210642	6.69441234143484	6.66667275786576	6.61920811297039	6.39699643183341	6.48391903222972	-0.395879552158292	0.133289230323299	0.488390739705249
Merged-chr10-95681244-2	chr10	95680744	95681744	+	976.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-117098.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	3.82863277104412	3.13253231907236	3.18684364489338	3.20455671219568	3.32284502812757	3.32220378561121	-0.553733872291918	0.422743910238338	0.791531847054717
Merged-chr4-145230811-3	chr4	145230300	145231300	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	16070.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.29358669851768	5.70102869383491	5.6771760057789	5.45015098432988	5.18129496865806	5.43898119755985	-0.409451549035891	0.249843564030814	0.646908996257932
Merged-chr10-94473563-3	chr10	94473046	94474046	+	759.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-41311.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.20729049456469	7.28489442681437	7.16647011161547	6.62431554051161	7.21506913088961	7.02034267141152	-0.360677086295878	0.187185336256729	0.572128204607461
Merged-chr1-39904940-2	chr1	39904440	39905440	+	637.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	4027.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	2.86600723770044	2.76011587791023	2.61409971892075	2.73816241272254	2.78327417165756	2.99341667648107	0.431779585052254	0.562830935081925	0.865755360453189
Merged-chr2-90503647-2	chr2	90503147	90504147	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-24473.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.09747558329877	4.8968409349499	5.01692365805803	5.34749899479792	5.14380371750677	5.53999723641752	0.692842395734329	0.0617761852696548	0.32259776728489
Merged-chr17-27025489-4	chr17	27024984	27025984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001251881, intron 2 of 6)	intron (NM_001251881, intron 2 of 6)	3143.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	6.21780182076981	6.47813191618528	6.25425629683595	6.33878950232928	6.27377591926956	6.02637425628315	-0.163417741799252	0.572859171887492	0.869934493236159
Merged-chr3-41412885-4	chr3	41412385	41413385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80314.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.07138270947171	4.97517696495858	4.73536509275777	4.80312681588067	4.52206499666684	4.45192856269267	-0.776838875838543	0.063848617182477	0.329225738273505
Merged-chr16-91647047-4	chr16	91646559	91647559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-87.0	NM_001357351	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	8.65569741358412	8.90421591221114	8.43404904186093	8.47559706960581	8.81773390654035	8.55040986106216	-0.0791680128320574	0.738230827495385	0.933990857168167
Merged-chr16-4679177-4	chr16	4678656	4679656	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	CpG	564.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	8.26049078585501	8.56938185762477	8.27627498762914	8.50996293380827	9.0176159230656	8.19861335106366	0.347604664722377	0.210305930674366	0.60239412634554
Merged-chr2-73066604-3	chr2	73066084	73067084	+	855.603149	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86138.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	2.2978691707141	2.51517609806371	2.44915226320068	2.64865246890844	2.5704910760835	2.65203491741825	1.19352230657469	0.142123248758629	1
Merged-chr2-170251786-2	chr2	170251304	170252304	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-104557.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.93494195234351	4.36642471222467	4.16382608844143	4.23666021918926	4.48869711802922	4.49484889294371	0.641844273417296	0.184465875622195	0.568167187813126
Merged-chr1-64338101-4	chr1	64337618	64338618	+	911.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194686.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.08746724932415	5.71662977981153	5.29352917078107	4.73256881644169	4.94244218349821	4.40082664354441	-1.42064538894805	0.00170069578013524	0.0272556807537545
Merged-chr4-99224982-4	chr4	99224463	99225463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	30816.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.29080535334631	6.70923150256634	6.20902978813906	6.9013931303538	6.84168252707804	6.37700248900353	0.482208510000246	0.122648727255718	0.468543928079233
Merged-chr11-53617399-4	chr11	53616890	53617890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027491)	promoter-TSS (NR_027491)	-52.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	4.41687623914511	4.37912052386817	4.97334541862928	4.03289519800772	3.95569401679725	4.03294638752467	-1.625630532445	0.00124892084825576	0.0214302828953895
Merged-chr19-21384131-4	chr19	21383630	21384630	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	88531.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.52594481433194	2.75583176170345	2.80372585959469	2.76411453389637	2.49244493499321	2.93487201564806	0.209241232466255	0.790738032262188	0.949584063682145
Merged-chr9-104232688-2	chr9	104232188	104233188	+	655.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30242.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.72083969772477	6.71846139986461	6.66068648584776	7.30684190249782	7.2707999339498	6.4594477863569	0.580938703869559	0.0633891684082138	0.327963223177899
Merged-chr12-84761888-1	chr12	84761388	84762388	+	1000.0	f0_balb.idr	intron (NM_023409, intron 2 of 3)	RSINE1|SINE|B4	11224.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	8.54649475549716	8.72443444296694	8.21401312855273	8.48599793544884	8.93741911615778	8.2354497089257	0.107461472380803	0.695148860794165	0.919230570201314
Merged-chr18-30508152-4	chr18	30507639	30508639	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	235274.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	5.4755029484134	5.63855836184229	5.30689769946418	5.76062217736554	6.0950824433856	5.56396350526955	0.641458694218767	0.0663750146217525	0.336476923153819
Merged-chr10-67072077-4	chr10	67071566	67072566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	24922.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	7.09983039614781	6.89112694782103	6.84457141798844	6.98152889809063	7.12062212648336	6.84236196694723	0.0610239470645331	0.810708326833359	0.955095234253787
Merged-chr10-127660607-2	chr10	127660107	127661107	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122895)	TTS (NM_001122895)	6096.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	3.03447992355284	3.14380128137682	3.22309052832284	3.21027643987976	3.28957501482974	3.45646996607723	0.776287574869376	0.220128836547688	0.614507907782981
Merged-chr5-22896009-3	chr5	22895512	22896512	+	844.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-149128.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	2.99770192492819	2.85152826583602	2.95917392482685	3.18058246411379	3.32447222129376	3.48417305457681	1.77053674870123	0.00925229874908235	0.095374786213286
Merged-chr11-114930464-2	chr11	114929964	114930964	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	RSINE1|SINE|B4	3922.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.15798008952855	6.34161006432699	6.5940352384737	6.28148627000426	6.44741868382854	6.37752236407715	0.00984875619447536	0.972667907521181	0.993868590220018
Merged-chr11-52065829-3	chr11	52065305	52066305	+	646.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	BGLII_B|LTR|ERVK	-33019.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	3.71189376393958	3.64945517994565	3.79902687410741	3.87641834287596	4.05462795447358	3.91837002932066	0.773938685921428	0.135878073674516	0.492706791925268
Merged-chr13-23711458-2	chr13	23710958	23711958	+	689.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010424)	promoter-TSS (NM_010424)	-604.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	6.35731444302513	6.41110916686017	6.66488152159715	6.58610733189606	7.07372337500115	6.60868752741781	0.493074200533851	0.0929102324240961	0.406161322871923
Merged-chr16-33415737-2	chr16	33415237	33416237	+	710.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	RSINE1|SINE|B4	15292.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	5.33677873224611	5.04489751081305	5.0238823452894	5.54317049262767	5.67414959471853	4.88932325157606	0.550385705468712	0.181333599086314	0.563652213858344
Merged-chr13-23761987-2	chr13	23761487	23762487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	399.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	8.36844102531153	8.86893330054855	8.32032638774665	8.27716827590311	8.8057651825122	8.20643656237456	-0.114885562667593	0.681308057734918	0.914666331546785
Merged-chr15-8642416-3	chr15	8641881	8642881	+	780.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 7 of 9)	intron (NM_148938, intron 7 of 9)	68426.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.13569702072973	2.83300619521867	2.72422473363976	2.97610912771151	2.83460733405974	3.05028358032942	0.183598553630703	0.802771042057353	0.953357209270081
Merged-chr13-100832296-4	chr13	100831770	100832770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	1157.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	7.02769042642343	7.32562571559192	6.95060715794081	7.22469962298734	7.51265156804428	7.18130253432857	0.306037873757151	0.242769586362654	0.63992054177032
Merged-chr13-5777026-4	chr13	5776458	5777458	+	966.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81134.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.37314074032256	3.40801140106557	3.1076686809038	3.39212098187538	3.16922763969079	3.4171337210553	0.0664439737093859	0.917010761810926	0.981497941482146
Merged-chr11-58328946-1	chr11	58328446	58329446	+	600.0	f1_c57bl6.idr	intron (NM_001256520, intron 1 of 2)	URR1A|DNA|hAT-Charlie	1393.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	4.93544740530266	5.07926964367929	4.90795646101618	5.15781147130559	5.15979239125449	5.4553071882469	0.571090659699959	0.123830607282398	0.470971276139752
Merged-chr12-12276642-2	chr12	12276142	12277142	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	14503.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.61662560135087	4.76540306040842	5.01355218574893	4.85016794067651	4.53599965954238	4.7607489726992	-0.191362414795111	0.64757047011133	0.901492962680207
Merged-chr16-92403177-3	chr16	92402676	92403676	+	716.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-3098.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.52494736772178	5.47440390334822	5.74888554338865	5.26481298874448	5.11147087513026	5.35245862180914	-0.669704838892271	0.0518353271156803	0.290641098291208
Merged-chr16-25022738-4	chr16	25022253	25023253	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36886.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.23514286580953	5.085291779677	5.18202485394446	4.68750158262853	5.15751954278317	4.9352491323329	-0.456824423006894	0.243733235929384	0.64086208327192
Merged-chr2-165873918-4	chr2	165873383	165874383	+	760.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	4554.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.74921840711805	4.24347205460077	4.60071388726703	4.46008558171115	4.46883457347515	4.74261175792887	0.0224651531933637	0.960680857931448	0.990386809359123
Merged-chr14-76505062-1	chr14	76504562	76505562	+	549.0	f0_balb.idr	intron (NM_009366, intron 1 of 2)	intron (NM_009366, intron 1 of 2)	552.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	5.68294804726954	5.97069921135165	5.21629933648958	4.56824113493598	4.62522073929833	4.54693477471442	-2.29818333813218	4.11025718779965e-08	3.24479941023007e-06
Merged-chr3-88338699-2	chr3	88338199	88339199	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178246, intron 1 of 21)	B1_Mus2|SINE|Alu	2439.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.86070616746016	3.71539601027646	3.76927304612577	4.10806911293839	4.06590509124918	4.13625805854651	0.972326005190955	0.0533204650773898	0.296028893893688
Merged-chr11-115054662-3	chr11	115054148	115055148	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 2 of 3)	intron (NM_172050, intron 2 of 3)	-6353.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	3.63831364935821	3.40354563409052	4.15143906718039	3.4749357370028	3.48931398991929	3.73274734898752	-0.652994690355488	0.293027807841147	0.690102227900588
Merged-chr2-84532478-3	chr2	84531970	84532970	+	664.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-25597.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.12877353893053	2.88574129861571	3.0289754807828	2.83865068380695	2.82899628634795	2.79534273302813	-0.96158951753305	0.174436345287162	0.553692661122078
Merged-chr12-33148659-2	chr12	33148159	33149159	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	973.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.89163771302636	6.12491755176108	5.57540970493762	5.90011433854128	6.02337576789056	5.57821187912195	-0.0650070109649327	0.849878599364973	0.964746847431705
Merged-chr4-147236143-2	chr4	147235643	147236643	+	990.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L1_Mus3|LINE|L1	60277.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	3.13855008087294	3.02224327632833	2.96704029518537	3.01188760641917	3.01731106741747	3.72558100329349	1.00672431865635	0.166780461834162	0.54240433228749
Merged-chr5-52669677-4	chr5	52669176	52670176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172490)	promoter-TSS (NM_172490)	25.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	5.3299075662981	5.43398468587542	5.50061699587145	5.58278976101645	5.50155468606667	5.47656061291856	0.198338982754817	0.545296841304587	0.858059274547204
Merged-chr15-74960102-2	chr15	74959588	74960588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164036)	TTS (NM_001164036)	4982.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.25590961041032	6.38487144087492	6.72787115980071	6.61516346061133	6.78983245173918	6.72587242159811	0.405787263598088	0.147935453265398	0.51321776824834
Merged-chr3-88554260-3	chr3	88553839	88554839	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033526, intron 1 of 10)	(TC)n|Simple_repeat|Simple_repeat	623.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	5.30642582888774	5.23528867168752	5.3979310697075	5.4797620350556	5.16035667253832	5.40173721996116	0.0736897401073216	0.833388363083346	0.961070491919313
Merged-chr9-47589989-4	chr9	47589456	47590456	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	MIRb|SINE|MIR	59604.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.38404667839072	5.38234772396452	4.90692479177031	4.32600809365788	3.76045399783225	4.27494281480746	-2.80649995538461	2.04946921043597e-08	1.73129171636504e-06
Merged-chr11-60223622-2	chr11	60223122	60224122	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1041.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	6.45576504499448	6.40932446369292	6.05042726356529	6.50498269004203	6.63196674706058	6.03853757656583	0.167385688769062	0.59763192047528	0.880433364120803
Merged-chr1-186749402-4	chr1	186748930	186749930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-72.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	6.50982062356623	6.28249806634076	6.34562313003157	6.40420129641879	6.35551915124311	6.15658896051507	-0.111700968679418	0.689340949081993	0.917319650405699
Merged-chr16-10543123-4	chr16	10542610	10543610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	-56.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	4.22457145074971	3.99356926074371	4.17064441110702	4.30304718365387	4.07787512542943	4.14548220943223	0.128884187546502	0.787677948833913	0.94877064431094
Merged-chr3-87909648-4	chr3	87909158	87910158	+	855.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2808.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	5.39054355345367	5.31759753261137	5.53358811205369	5.53527818800111	5.56767904220506	5.54005610649012	0.268232259522556	0.412969091872895	0.784725209448945
Merged-chr5-8057010-2	chr5	8056510	8057510	+	990.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080974, intron 1 of 7)	intron (NM_001080974, intron 1 of 7)	468.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	5.98060378604444	5.92728792955763	6.07042987925639	5.95657236400329	5.85422003347258	5.87835304729379	-0.163528568001534	0.577525807270478	0.872148719828391
Merged-chr9-50607603-2	chr9	50607103	50608103	+	722.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134902, exon 7 of 7)	exon (NM_001134902, exon 7 of 7)	3702.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	5.07068660450706	5.06058668968593	4.98877076699217	5.00640048731118	4.70672550668366	5.15417728989702	-0.189244900535844	0.626597453493067	0.892916235446326
Merged-chr2-144245714-4	chr2	144245227	144246227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20475.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	5.79440776076658	5.92172300232479	5.70432467347231	5.7371409791599	5.57326054461614	5.86737185044646	-0.171976410575966	0.585821335076141	0.875131338300747
Merged-chr11-6390590-2	chr11	6390090	6391090	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4535.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	2.78880450067015	2.49212073797382	2.49430679560126	2.62571912228154	2.65140723311485	2.88233584085648	0.641555735612395	0.420437479844845	1
Merged-chr1-184590844-4	chr1	184590355	184591355	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33164.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.07669646445733	3.7438322399414	3.87114638013189	3.49681873107535	3.70114824401749	3.89136791073585	-0.660030081042709	0.235468335857297	0.631640262097874
Merged-chr8-107437286-4	chr8	107436765	107437765	+	777.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	867.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	6.45001589484517	7.06719442601359	6.42066859295319	6.66959029291247	7.19893487102108	6.74779481594807	0.324457443932477	0.322711994788758	0.71605919099688
Merged-chr10-14959612-3	chr10	14959120	14960120	+	983.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199331.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	5.54722539973782	5.52806663288277	5.19719000590632	5.20308525402513	5.19986310102242	4.79695242310028	-0.700106431901371	0.0663084444067244	0.33622139196799
Merged-chr9-63109466-4	chr9	63108963	63109963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37517.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	6.46040197084219	6.67906055117361	6.54498280062472	6.5446894632931	6.49670116834404	6.65399265305921	-0.00836282589802107	0.974712995959019	0.994343415922287
Merged-chr15-93274380-3	chr15	93273888	93274888	+	755.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	791.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	6.09104751945396	6.04967160962989	5.86381533939111	6.26049030312346	6.2929259796085	6.0484557931508	0.339699502039281	0.245078601728976	0.642381314494918
Merged-chr2-167253704-4	chr2	167253204	167254204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13167.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	7.68324510085855	7.72900311291516	7.09481413409775	7.84062688794627	8.06111635838119	7.24757977856335	0.32922334736402	0.29508320877366	0.691990077927385
Merged-chr17-67384420-2	chr17	67383920	67384920	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29929.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.57631566127185	3.61306770393839	3.4845009111171	3.95211568904957	3.57489445800414	3.6142452169764	0.557019516314864	0.329261756105277	0.721185445491877
Merged-chr14-73238620-4	chr14	73238078	73239078	+	872.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175116, exon 1 of 1)	5' UTR (NM_175116, exon 1 of 1)	687.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	7.85860417292373	8.11205901842674	7.87524011867999	7.88546369898536	8.35428403010856	7.89080821868018	0.162592196952319	0.516203301864264	0.844051513295388
Merged-chr6-86523424-3	chr6	86522773	86523773	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2916.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	4.20435376671899	4.26077969229585	4.30804955458958	4.02937040856842	4.08317993457979	4.45662211533465	-0.175107499202141	0.714780145170479	0.926044950792719
Merged-chr13-48625662-4	chr13	48625158	48626158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301781)	promoter-TSS (NM_001301781)	14.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	6.29784335667337	6.35158027275183	6.56002106350507	6.4724300610539	6.11074247663606	6.12287976868079	-0.253843993769515	0.386435182902686	0.767120406662124
Merged-chr4-128796589-4	chr4	128796107	128797107	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	9505.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	4.23128081252453	3.839356251552	3.80204756335924	3.65704139306346	3.68703785993413	3.82048438033353	-0.823698198114763	0.130987194911567	0.483655758340434
Merged-chr9-22157686-2	chr9	22157186	22158186	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082532, intron 1 of 1)	intron (NM_001082532, intron 1 of 1)	840.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	4.6481741031116	4.69328905860008	4.67703641762563	4.62720814161071	4.46976454794273	4.15269191497762	-0.567232741519872	0.203246354025107	0.593108413920774
Merged-chr15-78773533-4	chr15	78773036	78774036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008595)	promoter-TSS (NM_008595)	-91.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.01278790225854	4.84692015067931	5.04509346577162	5.11491581731477	5.15137353793928	5.0400213055827	0.300645660969421	0.413995146995504	0.785508920308339
Merged-chr13-117211596-4	chr13	117211103	117212103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8970.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	3.89013646034347	3.77056454301092	3.94763053239554	3.8085759164183	3.68568798848285	3.92060239298355	-0.213186657318951	0.683008819780453	0.91523316791368
Merged-chr10-81266778-4	chr10	81266264	81267264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025317, intron 1 of 2)	CpG	162.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	8.19141085582727	8.30933173412512	7.79457422436936	8.0500067775789	8.35428236860776	7.64307305277779	-0.0911190477758292	0.745827787210241	0.936251303305737
Merged-chr1-152841390-2	chr1	152840890	152841890	+	967.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005507, intron 18 of 21)	intron (NM_001005507, intron 18 of 21)	41237.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.28653698587118	4.30022904228555	4.4734539162332	4.90188190624371	4.91168445895562	4.78467283950172	1.26988325922218	0.00219779488439278	0.0331774522388525
Merged-chr2-157201644-4	chr2	157201156	157202156	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 1 of 21)	intron (NM_011249, intron 1 of 21)	2878.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	7.35929508061373	7.55983439876992	7.38908621582241	7.69267746555412	8.01223073821128	7.56140455460494	0.48898629777981	0.0476292468550816	0.27646559974312
Merged-chr5-43218339-4	chr5	43217842	43218842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-15121.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.9281914693361	5.21435244261224	5.40106913977904	4.92854291817707	4.79715746071776	4.92623599743234	-0.654427662182852	0.092295061190658	0.404726611412504
Merged-chr10-59266269-4	chr10	59265774	59266774	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	44352.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.18648499495104	7.25901630035907	7.01880678672346	7.46765567969982	7.54295874557765	7.1686084700587	0.368854201552229	0.138680643554791	0.49762124235228
Merged-chr10-30677151-3	chr10	30676630	30677630	+	824.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-21263.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.68191424294298	6.38775569819756	6.60580076893716	6.67296661611054	6.87543958823763	6.56164942480571	0.248253323917117	0.363462540372135	0.749070962978268
Merged-chr10-68277016-4	chr10	68276520	68277520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	CpG	1706.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	8.10755437183062	8.04945715141533	7.88906754067356	8.35305930783621	8.4432994890919	8.32300758921205	0.496096995892379	0.018302462600258	0.152611615196138
Merged-chr5-130171708-4	chr5	130171209	130172209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199059)	promoter-TSS (NM_001199059)	-110.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	8.83998642257949	8.9626955660289	8.43091684415933	8.64678018360593	8.61941423230414	8.39085844387859	-0.289361549468839	0.223171846709083	0.617980066590216
Merged-chr7-44857258-4	chr7	44856750	44857750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290767)	promoter-TSS (NM_001290767)	104.0	NM_001290766	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	7.27235323008013	7.19246151683079	7.31796949726233	7.58860261284831	7.72745010289625	7.61944045948408	0.573097977936265	0.0106917653439609	0.105346244913753
Merged-chr7-25395714-4	chr7	25395247	25396247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	240.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	7.29506447768614	7.24972590171145	7.29742041950451	7.49002290292733	7.43225191718613	7.39872764765744	0.239747825391136	0.285170752092432	0.682775240701726
Merged-chr2-153259789-2	chr2	153259289	153260289	+	828.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_080463, exon 5 of 7)	exon (NM_080463, exon 5 of 7)	18257.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	3.50202598956007	3.32780064291158	3.91473517905299	3.4054570222701	3.28634997020057	3.50256214998588	-0.729201249904659	0.242305335207277	0.639385479717347
Merged-chr15-76344546-2	chr15	76344046	76345046	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025567, intron 2 of 6)	intron (NM_025567, intron 2 of 6)	1023.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	3.99991985263444	3.69151847555285	3.79522779048109	3.98735161369916	4.06937805357481	3.86611736739262	0.445075054830938	0.394049067491002	0.772046311610617
Merged-chr2-58158379-2	chr2	58157879	58158879	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	1743.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	5.20692061871991	5.72760800192252	5.57485858754402	4.78989894716429	5.27015720222473	5.26111109787855	-0.779287907522665	0.0493719706813446	0.282385409434515
Merged-chr13-37365662-3	chr13	37365164	37366164	+	853.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	RMER15|LTR|ERVL	20319.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.72640389295945	3.55665920016439	4.00943625392066	3.81033377221282	3.81676903623376	3.5154423020695	-0.137073953432738	0.811166736894668	0.955134885850785
Merged-chr13-81655488-3	chr13	81655023	81656023	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2283.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	2.7912535038253	2.7133573949491	2.85464106348118	2.67198030120545	2.57180472934605	3.04063339708657	-0.0777490960379141	0.918696118668151	0.981830247255695
Merged-chr13-47230124-2	chr13	47229605	47230605	+	811.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36102.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.77469599261675	6.7551919009792	7.13313097138048	6.17590256963719	6.43963475168469	6.28624594668855	-0.924357588287066	0.00112000888462346	0.0196569709495358
Merged-chr4-63561520-2	chr4	63561020	63562020	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	B1F|SINE|Alu	1293.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	6.80752123867161	6.92172888602127	7.18976331655278	7.39899787687529	7.57617360914696	7.01618438808573	0.578188534047201	0.0357346844497453	0.232370398850766
Merged-chr2-164804318-2	chr2	164803818	164804818	+	812.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	563.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	7.15892883179156	7.10792401385293	6.78598470600919	6.99790739195656	7.12189693418423	6.89091658017416	-0.0366414751510234	0.887109406144347	0.973818520404627
Merged-chr2-166715488-2	chr2	166714947	166715947	+	884.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.27408821267138	3.19342191657254	3.56008340948536	3.78339119290537	3.6502764543715	3.63103776960279	1.2956506993954	0.0303168924013144	0.210375113245648
Merged-chr16-33906377-3	chr16	33905892	33906892	+	952.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 8 of 14)	intron (NM_001145884, intron 8 of 14)	60646.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.0868986323851	5.0500472994558	5.31804200139137	4.84996163747776	5.02862965780819	4.84475894161557	-0.490151096256157	0.196856812927318	0.584754678471847
Merged-chr3-61403429-2	chr3	61402929	61403929	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	38922.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.21110088349983	3.00583661244608	3.231261077103	3.07379500430165	2.94934768687141	3.51026073642935	0.176118040269406	0.798593689238071	0.952024179691701
Merged-chr11-32554193-4	chr11	32553708	32554708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	URR1B|DNA|hAT-Charlie	20942.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.87564987034335	7.77505090902103	7.66894406846437	7.92679984994334	8.07776985667283	7.50604672423212	0.129173616064833	0.607857412787808	0.884752831355176
Merged-chr13-119406244-3	chr13	119405734	119406734	+	851.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2777.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	4.05121740450272	4.04196110728167	4.10422495352332	4.22674953379698	4.14565896866852	4.17260461107216	0.335300803643955	0.47506876868975	0.821727753368561
Merged-chr14-105300755-3	chr14	105300260	105301260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 5 of 7)	intron (NM_029561, intron 5 of 7)	42087.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	4.4385230332919	4.59881917689109	4.40471585438731	3.36440118885177	3.38088181347161	3.44204512722455	-4.03309572598255	4.92313858909555e-09	4.81934724378191e-07
Merged-chr7-82649278-3	chr7	82648754	82649754	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	640.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	5.1044148168241	4.9067156646552	5.09605110721748	5.42763505120765	5.12026214799527	5.09141868631375	0.391673195817702	0.292758582833714	0.689885476081214
Merged-chr14-63133797-2	chr14	63133297	63134297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 2 of 9)	intron (NM_007798, intron 2 of 9)	11335.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.37607881738217	5.42876372688713	5.79981810411377	5.24474408505256	5.36298270048351	5.86037019126612	-0.0625991411962642	0.868211544760378	0.969642939011354
Merged-chr5-66298642-2	chr5	66298142	66299142	+	779.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027602)	TTS (NM_027602)	37801.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	4.40456528116951	4.27793815584188	3.98915284656088	4.71899015595149	4.73543075530422	4.37193725270546	0.961854665872889	0.0435902281444873	0.262366077221601
Merged-chr2-92435152-2	chr2	92434652	92435652	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	4.575915900232	4.86996697837358	4.34432153899759	4.03533229545511	4.50730439916707	4.54458953390186	-0.591892982148418	0.227159696804022	0.622281668659856
Merged-chr9-35117542-4	chr9	35117021	35118021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-657.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	7.76136579342082	7.46477498426517	7.75316712004532	7.70554758921503	7.92848701583868	7.52082123106098	0.104993627237263	0.669594680431247	0.909692012644768
Merged-chr19-4000274-4	chr19	3999793	4000793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025529)	promoter-TSS (NM_025529)	-287.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	6.79262457846067	6.62260571147003	7.091959468104	6.85031981449251	6.59491686660206	6.75795222303192	-0.165019278445466	0.549723018981523	0.86042385916162
Merged-chr10-13968101-4	chr10	13967554	13968554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	1675.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.42951625139526	7.23779567473367	7.30361299513005	7.27213979125181	7.03406059995592	7.04134966470486	-0.307584274009486	0.203137648684953	0.593047970473348
Merged-chr8-70535150-2	chr8	70534650	70535650	+	635.125	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199631, exon 9 of 9)	3' UTR (NM_001199631, exon 9 of 9)	-4525.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.02563072718797	2.65834053435243	3.05721013659018	3.0239007221192	2.55017411236197	2.9552271867848	-0.30986268123076	0.696543905909472	0.919511799366159
Merged-chr11-70020057-2	chr11	70019557	70020557	+	776.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	1452.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	2.86305497203296	2.65880105685779	2.83632437703095	2.89708664677899	2.73069734143705	2.96874052304323	0.388571208132559	0.591094441554989	0.877373190140703
Merged-chr7-98703548-3	chr7	98703047	98704047	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	300.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	7.52293793365281	7.41282876270583	6.98404918950141	7.50516850931798	7.10242384232335	7.0422998471837	-0.147152724146651	0.602278814086419	0.882299035371658
Merged-chr1-37490925-3	chr1	37490466	37491466	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	L1MC4|LINE|L1	-2361.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	5.93189740813815	5.85407900108247	5.76799140221897	5.96524153058277	5.88902819268413	5.97736076863843	0.146544980773977	0.621642667990272	0.890838690442753
Merged-chr5-125177919-4	chr5	125177377	125178377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	CpG	1337.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	6.33358436547491	6.62518874751718	6.66314058370021	6.31746599861466	6.49674731801502	6.31617081584148	-0.25706445765561	0.35837910206074	0.744662462836062
Merged-chr1-92180878-2	chr1	92180377	92181377	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-536.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	7.98523146360241	8.47394080915947	8.10121570098774	8.11543666763933	8.26448752423	7.71045320787822	-0.210256906900291	0.429085532095049	0.795570481157701
Merged-chr19-45176486-3	chr19	45175990	45176990	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25775.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	2.35087539276227	2.45721006444114	2.46600614786151	3.1478140325765	3.05229267035146	2.81999054925676	4.16328586927274	8.71088741153149e-05	0.00252914768997141
Merged-chr8-109750866-4	chr8	109750374	109751374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13135.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	4.74146182617938	4.74060873600273	4.81761963023054	4.58797621370382	4.49591421788892	4.88222930346117	-0.262468362578045	0.525370996160444	0.848999112257332
Merged-chr6-142391166-4	chr6	142390675	142391675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025872, intron 1 of 4)	intron (NM_025872, intron 1 of 4)	3932.0	NM_025872	66964.0	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	3.9225722196532	3.62726511283177	3.98310663460304	4.069481724079	4.02955596258626	3.68742420375772	0.301475743966582	0.580399313050271	0.872817517129402
Merged-chr10-77265560-2	chr10	77265060	77266060	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 5 of 8)	intron (NM_030262, intron 5 of 8)	6260.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	5.50798961813983	5.46648620282038	5.71114939054246	5.60256984114385	5.55904174630462	5.89156652239289	0.231676834684779	0.483640386464535	0.826390727908106
Merged-chr5-99252948-4	chr5	99252441	99253441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145839)	promoter-TSS (NM_145839)	-14.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.23451336892331	8.05388708829878	7.8197953787919	8.13617518626833	8.2167423728874	7.86746144445849	0.0490235619347497	0.837831966466312	0.962251281434133
Merged-chr19-41335023-2	chr19	41334523	41335523	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	B2_Mm1t|SINE|B2	50047.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.37369913095172	7.3386008251423	7.32465327304046	7.58988999752888	7.77134462970774	7.23969681614587	0.318045228165257	0.205667104078174	0.59621462551429
Merged-chr5-67814661-4	chr5	67814143	67815143	+	906.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009727, exon 2 of 36)	exon (NM_009727, exon 2 of 36)	32788.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	6.92072858528874	7.23169572436634	6.87599093736576	6.79515827139196	7.19380031370116	6.79686962277199	-0.110056396642776	0.692045733366939	0.918541547639936
Merged-chr11-69695162-2	chr11	69694662	69695662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 2 of 6)	intron (NM_011614, intron 2 of 6)	936.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	5.87298128503196	6.36221654364745	6.1579385123813	5.6770555725443	5.46366871477139	5.43291026697666	-1.1043533350243	0.000869059582191908	0.0161592647407875
Merged-chr9-35633190-2	chr9	35632690	35633690	+	762.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15012.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	2.65660148111259	2.72309661644726	2.70681902705146	2.97973324700174	2.80864918586705	3.08163716834075	1.33771563308817	0.0675420215629631	0.339928417722799
Merged-chr4-32010993-1	chr4	32010493	32011493	+	831.0	f0_balb.idr	intron (NM_009316, intron 14 of 16)	intron (NM_009316, intron 14 of 16)	46886.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.46277511563869	4.47597225994927	4.45496186667702	4.44802588334876	4.09910368357813	4.34887612610995	-0.431688625239978	0.339685077858207	0.729350397606009
Merged-chr10-31600300-3	chr10	31599795	31600795	+	996.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	9430.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	3.47478287793804	3.42970460501266	3.45093267009239	3.04242381004798	3.08502162758146	3.35966840853629	-1.20101947026904	0.0597022022020969	0.316278460431429
Merged-chr15-76380409-4	chr15	76379909	76380909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175457)	promoter-TSS (NM_175457)	-104.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	7.37829541875857	8.03479803479531	7.01209783932104	7.2355098739782	7.40295956307979	6.75094032081935	-0.574722787160682	0.0971221991939267	0.415523822100679
Merged-chr9-119365435-4	chr9	119364928	119365928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359699, intron 3 of 17)	B3A|SINE|B2	8047.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	3.7868941419037	3.74387195688699	3.87459284881024	3.75646111047847	3.97018101901559	4.08360273835928	0.443761498942698	0.392786975704275	0.771320548318037
Merged-chr8-47991143-4	chr8	47990661	47991661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	-610.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	7.36586775362731	7.68346670940653	7.60807249699512	7.20861532735769	7.28668601995188	7.25089514816022	-0.455326052022581	0.0546700664310101	0.300282981555977
Merged-chr2-31759155-1	chr2	31758655	31759655	+	552.0	f1_balb.idr	promoter-TSS (NM_009594)	promoter-TSS (NM_009594)	-784.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.29450932046931	4.39087178031536	4.33634166264867	4.19576006706702	4.10971631455183	4.27110549762273	-0.419513902087161	0.35603813743608	0.742919807519939
Merged-chr16-10961722-2	chr16	10961222	10962222	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	ID_B1|SINE|B4	31399.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.2676940457959	4.14339365974542	4.45153879442032	4.36975561160837	4.24184496177656	4.06558786096979	-0.132040953507998	0.77999636307616	0.945949149660645
Merged-chr4-53136714-2	chr4	53136214	53137214	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	23181.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.55406832225827	3.78861081441278	3.15729636176411	3.38327755827889	3.43082262137824	3.41891836038688	-0.446488640444468	0.491834981149604	0.830778358974458
Merged-chr7-25619385-4	chr7	25618871	25619871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025504)	promoter-TSS (NM_025504)	-43.0	NM_001290487	66349.0	Mm.159956	NM_025504	ENSMUSG00000057229	Dmac2	2310004L02Rik|Atp5sl|C030044E10Rik	distal membrane arm assembly complex 2	protein-coding	5.62611055735323	5.58150574439636	5.41597109823976	5.54274182480207	5.7201296109196	5.31780328198325	0.00143445292540158	0.99663540428885	0.999127275997073
Merged-chr5-140795420-3	chr5	140794913	140795913	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35018.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.14614989599263	5.22227370829271	4.96829556722472	4.05646018680953	4.05273122494989	4.24183173922837	-2.56476475936266	1.16092990031262e-08	1.03578353979375e-06
Merged-chr17-12755289-4	chr17	12754792	12755792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13981.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	7.41064399142916	7.79379158645777	7.32487297097273	7.70652095391205	7.90316625847131	7.29864477443071	0.19794880301724	0.478500627700543	0.823834402333981
Merged-chr1-63176208-2	chr1	63175708	63176708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018796)	promoter-TSS (NM_018796)	614.0	NM_145518	227197.0	Mm.290791	NM_145518	ENSMUSG00000025968	Ndufs1	5830412M15Rik|9930026A05Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 1	protein-coding	6.20590253713599	6.40964909928468	6.38586432740326	6.29983327110108	6.5479947568012	6.24825075522098	0.0774967183282848	0.784245126026963	0.947513080979134
Merged-chr8-117201713-3	chr8	117201223	117202223	+	943.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	ID_B1|SINE|B4	43588.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	3.29573077414637	3.23756051892173	3.29250478707895	3.37639063804378	3.19216456414224	3.06415360366852	-0.222942504693712	0.725754013355455	0.929707128236285
Merged-chr5-72219819-4	chr5	72219313	72220313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	16470.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.61543641200467	6.27281472131588	6.20849860775504	6.70077263990867	6.67747770192802	6.52618105757995	0.408507290268937	0.148692109151768	0.514500897687118
Merged-chr1-55023891-4	chr1	55023379	55024379	+	772.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	(GGAA)n|Simple_repeat|Simple_repeat	3599.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	4.64395477669046	4.61799555310622	4.76870104678132	4.35345426011981	4.64709432089057	4.76008040092746	-0.188466995341494	0.657463943188279	0.904798742244684
Merged-chr19-32181425-4	chr19	32180909	32181909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	29604.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.37815189764508	7.46848560710736	6.51485183362757	6.22291317060986	6.09157773729945	5.78636042371054	-1.80953559513991	2.5373714792412e-07	1.61785138731572e-05
Merged-chr9-35278080-4	chr9	35277578	35278578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3027.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	4.99892134350002	5.08404534231471	5.19511712233044	4.95032053346015	5.13759154536446	5.06087568192546	-0.0717574223244317	0.844998149155218	0.963760118842549
Merged-chr3-60481916-4	chr3	60481431	60482431	+	908.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	9101.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.33664620436727	5.67281303248985	5.50090447421752	5.61869725957695	5.71862373397419	5.64806183251313	0.282772769871321	0.390759326510281	0.769924051020271
Merged-chr6-119378693-2	chr6	119378193	119379193	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	L1MB4|LINE|L1	10041.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	3.97124696930399	3.68570853663044	4.3486490934082	3.82782825977568	4.02558302251315	4.37520911685827	0.193149389944724	0.731297737716652	0.931357644172417
Merged-chr5-123150332-4	chr5	123149781	123150781	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	8088.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	4.65577677134595	4.65597192076594	5.11832285251283	4.7395832662413	4.89258465295091	4.91909732254622	0.085081305816328	0.837338720112403	0.962133986386607
Merged-chr19-11770386-4	chr19	11769872	11770872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025606)	promoter-TSS (NM_025606)	-43.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	7.30698471363475	7.47420095520174	7.07672659042165	7.5143981335786	7.53428361846232	7.05170284552412	0.134778360912543	0.616309755295121	0.888323384760338
Merged-chr7-142384455-4	chr7	142383984	142384984	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3386.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.7294876728716	4.71576130017611	4.63447064257442	5.64294413497726	5.56776007829953	5.34152806017885	1.73737697589765	3.04703566362671e-06	0.000143647446741672
Merged-chr1-75190952-2	chr1	75190452	75191452	+	840.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_109938, intron 1 of 15)	intron (NR_109938, intron 1 of 15)	1058.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	3.75840115793003	4.18976892721456	4.06066161666461	4.05092657564352	3.92626387916804	3.98504938794887	-0.0883122364017093	0.864001193789625	0.968269312109804
Merged-chr16-78577354-4	chr16	78576858	78577858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-670.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	7.20834337124519	7.47597079098002	7.09603208069338	7.39865997458642	7.66111360494091	7.21820719290661	0.252479581860285	0.336198139024884	0.726248727951986
Merged-chr13-112785185-4	chr13	112784684	112785684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15593.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.15009812594564	5.06073583240154	5.30490253680059	5.50689431016711	5.63159313911025	5.65169349282919	0.8455114190439	0.0125064913327931	0.11765924254448
Merged-chr8-84708460-4	chr8	84707850	84708850	+	733.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	6893.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	5.21351323286119	5.46000628291391	6.10842134641253	5.83778641647629	5.36256194107881	5.8552360251939	0.105345899654762	0.796695173992227	0.951484355174064
Merged-chr15-58732197-4	chr15	58731703	58732703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	91224.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.18182652979357	5.27894192274573	5.16669312700331	5.15312255542843	5.26712358985304	5.09341959687031	-0.0667943683870152	0.850173923681569	0.964823340142195
Merged-chr6-84583200-2	chr6	84582700	84583700	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10610.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.03739197772245	3.77183517598492	3.80214007642697	3.79747972979831	3.55359429690522	3.65931613232368	-0.682510121958461	0.210867591329034	0.603161969426302
Merged-chr13-54690557-2	chr13	54690057	54691057	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	-2357.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	2.87906083582643	3.03863557643848	3.07777884820898	2.8328614763945	2.81354144894434	3.20392251522781	-0.205437855151915	0.772076481295639	0.943680976839558
Merged-chr19-17247546-4	chr19	17247048	17248048	+	798.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91957.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.2926802168789	5.37181033829653	5.47067497409828	5.14842066931849	5.55530038107395	5.32451946516127	-0.0236816934317381	0.946769813367494	0.988007649185823
Merged-chr12-98272707-3	chr12	98272219	98273219	+	807.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	L1ME3A|LINE|L1	4084.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.36683089979688	5.59675097241419	5.43955684805335	5.44247595675783	5.39891118057187	5.88623473991021	0.204226170787806	0.563353426637899	0.865926383742263
Merged-chr7-27167952-4	chr7	27167534	27168534	+	615.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029391)	TTS (NM_029391)	-1232.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	6.6718869831199	6.54822177863591	6.65272544370813	6.94605883953346	7.02131421543886	6.9102007586262	0.529322781676314	0.0327127050842502	0.220223201023486
Merged-chr19-45006550-4	chr19	45006065	45007065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	7.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	7.04116644868152	7.35105445956326	7.38502228036424	7.09156737022019	7.26513014666032	7.14669128710948	-0.137152939969223	0.58150155517703	0.873299082500526
Merged-chr1-131276003-2	chr1	131275503	131276503	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 3 of 21)	intron (NM_019777, intron 3 of 21)	3560.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.77609838505107	4.82610403093441	4.87756698836677	5.29261823664509	5.11415333851817	5.50776011650102	1.01433198486494	0.00728732348244597	0.0804836225547338
Merged-chr7-92875180-4	chr7	92874677	92875677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-76.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	8.76171354010211	8.61442727588035	8.46959332646772	8.5438201274221	8.66771699845334	8.36776786239973	-0.120571425027827	0.579699834753861	0.872595003519464
Merged-chr11-78194901-4	chr11	78194398	78195398	+	895.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045516, intron 1 of 3)	intron (NM_001045516, intron 1 of 3)	1506.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	3.14689040282267	2.98472103359158	3.10439552163415	3.00111157606291	3.02035122474073	2.80507782219219	-0.591669746064504	0.394097512534629	0.77206906441863
Merged-chr4-136142921-4	chr4	136142445	136143445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-877.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.27964889518359	8.28578305902105	8.07662750344093	8.38260581467928	8.56797126269887	8.05878940098577	0.197122445055341	0.406208449403541	0.780583800069297
Merged-chr7-129331976-4	chr7	129331469	129332469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	74875.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.69851969695647	4.98906125986116	4.96150809384985	4.7691665958612	4.7815250884699	4.80834730765438	-0.229209238878084	0.56119179167627	0.865407801976397
Merged-chr19-9911464-6	chr19	9910961	9911961	+	860.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11928.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	5.86315634412995	5.78835417610428	5.6248989387449	6.10893105949623	5.87624087565127	5.71633930079288	0.260023108472265	0.412582468804726	0.784551818322662
Merged-chr12-111670943-4	chr12	111670479	111671479	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021273, exon 5 of 8)	exon (NM_021273, exon 5 of 8)	1359.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	6.54387042224157	6.64176256062241	6.37016724459871	6.43900929028682	6.53923768665731	6.4105845676127	-0.101497032479574	0.7056774526826	0.922834459892351
Merged-chr7-28168856-4	chr7	28168342	28169342	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007991)	promoter-TSS (NM_007991)	-906.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	6.37204151926101	6.78694100730388	6.88874366337282	6.70722611078705	6.95719064903602	6.96044915290252	0.28756830466801	0.310140520767271	0.705703687705182
Merged-chr9-123923690-4	chr9	123923209	123924209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	44983.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	9.11238125251795	9.27384653170157	8.92768439654484	9.20925070384284	9.5008999756553	9.02322099280782	0.202516579885608	0.380071921603449	0.762308048682461
Merged-chr10-128488948-2	chr10	128488448	128489448	+	664.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114096, exon 29 of 29)	exon (NM_001114096, exon 29 of 29)	4061.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	6.02858501929508	6.14393642388186	6.54333853573705	5.90722934590945	6.31196169591456	6.50479887927575	0.0213597682531287	0.948424674999724	0.988136336238819
Merged-chr18-39265274-4	chr18	39264767	39265767	+	861.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	221978.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.33584632844397	4.09344111193094	4.25128003991756	3.97586953276426	3.95694614225225	4.23063953337875	-0.507453726952615	0.2959021812284	0.692709629999205
Merged-chr11-98588292-4	chr11	98587797	98588797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	6.75379135315031	6.76936846287064	6.42398657922034	6.7550611806188	6.7513098646272	6.27694269120152	-0.0665499112683265	0.82040352026509	0.957629072297684
Merged-chr13-55209656-2	chr13	55209156	55210156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008739)	promoter-TSS (NM_008739)	-126.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	2.97253514288319	3.06082369901896	3.19741580162352	3.22709023945799	3.22377952600131	3.48288720945927	1.00259832167228	0.1218419536881	0.466898097194409
Merged-chr18-52565565-2	chr18	52565065	52566065	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35698.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	3.75412217715032	3.80749977088733	3.8662568566952	3.95716700862326	3.928136745294	3.83415316791293	0.327155637273168	0.521557145410043	0.847115497858263
Merged-chr1-38012315-4	chr1	38011800	38012800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	14290.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.78388183083022	6.53978071875132	6.69381905192909	6.92479755002958	6.7069907086268	6.49387252418487	0.0813556928745611	0.766544396636266	0.94248431703451
Merged-chr13-110561194-4	chr13	110560739	110561739	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166195.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.27986079525784	6.80179338865776	6.74822112620031	6.51367714237357	6.76921976124334	6.47403510162492	-0.0460286559890194	0.877043947340544	0.971489168500291
Merged-chr9-32466613-3	chr9	32466151	32467151	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72666.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	2.86950327424948	2.90006468051766	2.87080279269901	2.53342126470209	2.65081829007667	2.94304138256344	-0.864732152009802	0.258500456179705	0.656051662718961
Merged-chr16-3909040-4	chr16	3908564	3909564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	55.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	6.01361360275877	6.16539657149251	5.73662583663423	5.9209459172571	6.14822849187808	6.0260267015325	0.0741476387196105	0.810996475083743	0.955096593239846
Merged-chr18-4325791-4	chr18	4325289	4326289	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27164.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.9687825981772	5.73728977183239	5.93170968160982	6.39115048854855	6.53273957962218	6.28005872914097	0.902761066926982	0.00185419034064364	0.0291375769337632
Merged-chr5-138993954-2	chr5	138993454	138994454	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008808, intron 1 of 5)	CpG-11694	999.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	2.77922484488543	2.5736989478677	2.92190338016694	2.81123546286329	2.53171845477718	2.69307493433294	-0.426708011073415	0.580360711384253	0.872806789923022
Merged-chr7-19501135-4	chr7	19500636	19501636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	7195.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	6.95893178095331	7.26229265327048	7.07381821166578	7.10922003202308	7.49456418211667	7.13168380176261	0.239208065120758	0.362188986259838	0.747705581519093
Merged-chr5-142445050-2	chr5	142444550	142445550	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-18881.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	3.16817298157021	3.02537484788936	3.17947715656387	2.92220915125239	2.62566541563439	3.25086124541725	-0.768812268852418	0.315749393127928	0.71000095944732
Merged-chr4-31963955-4	chr4	31963467	31964467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-140.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	7.58235993143321	7.88916056226532	7.31256472937041	7.70588859810906	7.75644313349016	7.58561318061681	0.0885503972826819	0.728510356879173	0.930478966998914
Merged-chr12-75818794-3	chr12	75818300	75819300	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	CpG	482.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	5.92298469833296	5.98262194302707	5.60977885482458	5.7405391559726	5.30400457853678	5.22174323325758	-0.756107271509236	0.0339862285064533	0.225530433173695
Merged-chr9-40832220-3	chr9	40831705	40832705	+	847.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	30932.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.31701875453693	3.11627202368894	3.52797178499936	4.17971519487285	4.06143012831228	4.01885329423779	2.84852074060236	5.51193666133011e-06	0.000240501953705273
Merged-chr12-79617511-3	chr12	79617029	79618029	+	805.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	307204.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.09297810516072	5.74982584426453	5.84770819730921	5.90980214748396	5.5070442431811	6.32470883296447	0.0676463088479588	0.852497476384517	0.965385693881201
Merged-chr8-10835279-4	chr8	10834823	10835823	+	952.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47131.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	6.01531844119246	5.40164613436531	5.26580015269663	4.99036688845671	5.14589973671388	4.69860478457234	-1.27856411510424	0.00276697054406377	0.0396014336596666
Merged-chr9-66383546-4	chr9	66383042	66384042	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 3 of 77)	T-rich|Low_complexity|Low_complexity	33092.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	3.94941140897741	4.22192914338432	3.94752676051271	3.75124400117868	3.97337178771539	4.41183981784866	0.0493475079170104	0.927673645168677	0.983648753930591
Merged-chr5-103758703-4	chr5	103758215	103759215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	4142.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.90635545588468	3.74031413370986	3.8423141216043	3.75271707379232	3.38797425109635	3.91128912689179	-0.453937540098537	0.4279963352934	0.79478410196054
Merged-chr5-33630250-1	chr5	33629750	33630750	+	630.0	f0_balb.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-615.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	5.54185876432424	5.50847822992575	5.70515180228866	5.66628077665524	5.69954683886091	5.54982562923517	0.122161192098807	0.702217982883914	0.921841079228287
Merged-chr11-87450004-2	chr11	87449504	87450504	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B1_Mus2|SINE|Alu	22413.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.25329474657404	4.30000435598283	4.70615552523299	4.44393035040842	4.39977680121835	4.41989203718084	-0.00537974288513154	0.990585552640297	0.997892660866058
Merged-chr17-43327955-4	chr17	43327474	43328474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32457.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	4.78805270296894	5.11615864691064	4.96572970843811	5.2026238844529	5.25487747669172	5.17027174067759	0.51690151052193	0.16415623897655	0.538332571345951
Merged-chr8-110950491-1	chr8	110949991	110950991	+	588.0	f0_balb.idr	intron (NM_009179, intron 1 of 6)	intron (NM_009179, intron 1 of 6)	30626.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	2.21397214459929	2.40527457803275	2.43067431476895	2.15590972605575	2.0830932361048	2.37913185889509	-1.01288193123523	0.26030176513283	1
Merged-chr16-11002653-2	chr16	11002153	11003153	+	677.966675	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6245.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	6.53335417593378	6.42194510848707	6.2800369536645	6.11087493979569	6.3716130355746	5.95550508740764	-0.411892128905545	0.164767457751278	0.539444053691455
Merged-chr19-10895177-4	chr19	10894681	10895681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253843)	promoter-TSS (NM_001253843)	-50.0	NM_134129	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	6.44284346670038	6.51590138840101	6.13688946373562	6.25549782800981	6.26885885128264	6.38272346609042	-0.143347987667826	0.613473182506366	0.887273066396938
Merged-chr10-68738738-2	chr10	68738238	68739238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	MTA_Mm|LTR|ERVL-MaLR	14992.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.36928369269666	4.98053391052241	4.66871793209559	4.67489634479949	4.46243747152979	5.14577957216327	0.189488793216008	0.692959407272455	0.91880752705484
Merged-chr2-29634250-2	chr2	29633750	29634750	+	685.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	14530.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.64014562814164	3.50178280493904	3.60502170449812	3.50119696583107	3.40275987700051	3.40168864640716	-0.542058383532889	0.34522072160973	0.733666487940844
Merged-chr16-56075427-4	chr16	56074922	56075922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	18.0	NM_001003973	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	7.15454504200922	7.0337754164382	7.08803102606645	7.13603967728771	7.03758710128555	6.97231922222678	-0.0613743817123158	0.796736588875166	0.951500675820605
Merged-chr16-32607766-3	chr16	32607267	32608267	+	902.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-1129.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	4.41979708075593	4.29100251832857	4.77914346399836	4.35574015511636	3.95846050655905	4.4328363078887	-0.644945844984151	0.191457538801328	0.578091345710453
Merged-chr7-19326564-4	chr7	19326056	19327056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16511.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	7.43345441152285	7.15834076105968	6.55401536045257	7.37556087113833	7.60646717829196	7.03122228633689	0.379972697061478	0.241560971877256	0.638636461346638
Merged-chr12-110446496-4	chr12	110445941	110446941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-738.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	7.49534632507373	7.78541461781416	7.677954475225	7.65284012618459	7.93218146261401	7.62366682382198	0.132463576343393	0.579116145260116	0.872437416842052
Merged-chr1-155147442-4	chr1	155146958	155147958	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-644.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	5.56201793296435	5.69638136018905	5.44206438402939	5.35695269958418	5.40611709955024	5.35030753791126	-0.392838620337986	0.236477650449603	0.632745673713476
Merged-chr15-27688321-4	chr15	27687864	27688864	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6822.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.35881452696681	4.09217696224375	4.02950643741503	3.80989672980156	3.50876364393874	3.90044509025826	-1.34732365918881	0.0129926740955331	0.12088722197709
Merged-chr7-104244430-4	chr7	104243930	104244930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357679)	promoter-TSS (NM_001357679)	-27.0	NM_001357679	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	6.70948449183765	6.63831759706191	6.28875719147432	6.71448587608404	7.07175173657319	6.72101423999484	0.448945754811011	0.117259099311549	0.457311976431135
Merged-chr1-37478824-2	chr1	37478324	37479324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	9781.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	6.85574580771976	6.84892882892331	6.25769596266641	6.86527441239846	7.21719178727788	6.62016016939199	0.371528014431329	0.243207936830613	0.640453164779192
Merged-chr11-62007624-4	chr11	62007225	62008225	+	933.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	50962.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	5.85054806079012	6.1059313267369	5.79904986012985	5.51047075623327	5.56671182689427	5.67776649149159	-0.636075566767683	0.044849442283532	0.267036307229204
Merged-chr7-128235553-2	chr7	128235053	128236053	+	776.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-1804.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	3.62384925402613	3.58860235986163	3.92898376252451	3.97530478925712	3.72967841339524	3.64203053161052	0.256240584903449	0.645249755997437	0.900460238105405
Merged-chr3-20076834-4	chr3	20076354	20077354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355097, intron 10 of 25)	B2_Mm2|SINE|B2	18563.0	NR_105047	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	5.22510187219362	5.49759765143749	5.51276936533597	5.21100685218145	5.54124476030896	5.65461498432879	0.124243482411669	0.726832641236468	0.930054055622982
Merged-chr1-80637330-4	chr1	80636820	80637820	+	926.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28032.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.27150956753564	6.49801461027519	6.18047837897227	6.42019589872224	6.46937089334463	6.4594909460977	0.192003141918525	0.48772017132461	0.828597572185934
Merged-chr1-138962600-7	chr1	138962110	138963110	+	998.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1099.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	7.15530783098051	7.29014842732954	7.12121909602703	6.98224695535691	7.39142407420619	7.03442802547081	-0.051657263542024	0.841252979898541	0.962909549034125
Merged-chr11-117797987-2	chr11	117797487	117798487	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 1 of 5)	intron (NM_029964, intron 1 of 5)	327.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	2.52343838684178	2.38186482191868	2.4475360952608	2.51488664224399	2.43580363800381	2.82798706860246	0.851410637506678	0.2958133592086	1
Merged-chr11-85506490-4	chr11	85505998	85506998	+	877.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 15 of 25)	B1_Mur4|SINE|Alu	153334.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	3.80278537032031	3.98881766392358	4.31749527257265	3.76181507275905	3.62862919287485	4.13745859094228	-0.591685085747993	0.290801084131319	0.688627030804222
Merged-chr17-73939161-3	chr17	73938653	73939653	+	961.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	MTE2b|LTR|ERVL-MaLR	11043.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.90633931566525	4.77356486907236	4.54176302116502	5.04175212639555	4.89627655840613	5.00745885632879	0.488144277518957	0.221260523093065	0.615748128313864
Merged-chr8-54531623-2	chr8	54531118	54532118	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-1620.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	2.60295191167149	2.8354423081181	2.96956750582595	2.84679000368797	2.46167645549555	2.54656462400073	-0.958591497054604	0.239825817992945	0.636770540094307
Merged-chr16-90220613-4	chr16	90220105	90221105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-137.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	8.12794016768182	8.0171930226813	7.86159360282811	7.92311211020612	7.87403732721873	8.06147489878616	-0.0853259435660213	0.697843240993946	0.920111182740464
Merged-chr1-63178220-2	chr1	63177720	63178720	+	851.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028558)	promoter-TSS (NR_028558)	-803.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	4.51923979591448	4.66711148940999	4.73205836862996	4.71380987689322	4.57943876224556	4.93970670220262	0.243245273945022	0.559019605919184	0.864901733108576
Merged-chr4-135918364-2	chr4	135917864	135918864	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-2362.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	6.49728609693049	6.45245745937983	6.59406832374862	6.5175350618307	6.50818647707389	6.55204572547844	0.0212885559172026	0.934642159118508	0.985727536128156
Merged-chr9-78525776-2	chr9	78525276	78526276	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-44052.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.98109868729474	3.83898138491681	3.99437468437031	3.80983708029814	3.6432405528671	3.76627423191905	-0.641720641702521	0.219131905846052	0.613224645184221
Merged-chr13-115091437-2	chr13	115090937	115091937	+	966.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	-1279.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	3.92107127789495	3.64637484188314	3.60605052880981	3.76189064007504	3.65190950198938	3.73167026928422	-0.080052354348224	0.884086747868208	0.973466734537782
Merged-chr19-42146424-4	chr19	42145920	42146920	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-969.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	5.70714484620253	4.90402200690777	5.42035234883003	4.71947924163578	4.93202675143712	4.68158234940177	-1.25077316574907	0.0040890476794712	0.0528161253203104
Merged-chr14-19916617-2	chr14	19916117	19917117	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	MLTR18D_MM|LTR|ERVK	60076.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	4.1356124353126	4.3933962247429	4.12417694326508	4.39857786871478	4.28244885171691	3.98935068093035	0.0333370621238343	0.945693008923621	0.98796006280508
Merged-chr16-52056852-3	chr16	52056317	52057317	+	683.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	25268.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	5.75451426152059	5.99869001827338	5.48227161154698	5.84427519946496	5.74743171763549	5.51522953089333	-0.106507006005392	0.754323369171564	0.938859012739919
Merged-chr11-118478488-2	chr11	118477988	118478988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 1 of 13)	intron (NR_153103, intron 1 of 13)	1656.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.80251889356028	6.31190574729626	5.85271167825384	6.0564770999258	5.99007687750773	5.47964316085275	-0.244286422094022	0.49328476257025	0.831208279358962
Merged-chr8-20297008-4	chr8	20296533	20297533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030708, intron 1 of 4)	CpG	399.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	5.88150903562055	5.94973540626531	5.99519020838131	5.78476047875953	5.61699400181392	6.01165118030166	-0.247887588671165	0.426158907783092	0.793675419643125
Merged-chr9-94361382-3	chr9	94360901	94361901	+	798.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176680.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	3.71545420373142	3.87252462353382	4.28272607386052	3.91570878673622	3.59966394155268	3.96103411317986	-0.434959455074226	0.439100675250289	0.80095471312154
Merged-chr7-56019650-4	chr7	56019142	56020142	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153578)	promoter-TSS (NM_153578)	-69.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	3.25364592765264	3.11682725095288	3.27217149819299	3.15218389898775	3.05361894208465	3.05379806081454	-0.551950600824972	0.391741135973185	0.770718474500669
Merged-chr18-34080614-3	chr18	34080129	34081129	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-73423.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	3.476465116364	3.18603822594338	3.01814729581332	3.44107818471127	3.28625529224416	3.28150190625961	0.360624240391665	0.58678509451003	0.875655897836385
Merged-chr16-46011067-4	chr16	46010544	46011544	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-631.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	6.08806522709533	6.68583885728713	6.05218833829749	5.91202085186044	6.06705962807354	5.75668143528647	-0.668017535679921	0.0492704922723807	0.282154103303528
Merged-chr16-21815069-4	chr16	21814556	21815556	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	20709.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	5.17222214431892	4.93701986489538	5.17175061378859	4.90238630784791	5.14855115058527	4.84501500100483	-0.234233065953138	0.542699226799807	0.857318248006765
Merged-chr11-96065385-4	chr11	96064866	96065866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	-2.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	6.64701158471574	6.55596868557343	7.02109944119124	6.80951201587862	6.39428160228192	6.89735332393573	-0.0605663179843169	0.839698787763886	0.962784121274377
Merged-chr10-94960203-4	chr10	94959706	94960706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15628.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.13237325626164	3.93312550465686	3.93864110016236	3.76329949279416	3.53931056600667	3.64078558503542	-1.17236407830044	0.0292395946584053	0.205487178406807
Merged-chr2-120037989-4	chr2	120037497	120038497	+	827.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145378, intron 11 of 19)	intron (NM_145378, intron 11 of 19)	4564.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	2.98107363509352	2.95462497516268	3.01579495639355	2.77376748821833	2.63906889835389	3.03037352069139	-0.831150319556772	0.255268238860313	0.652364778963479
Merged-chr19-55555677-2	chr19	55555177	55556177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	146527.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.32165377418612	5.080894955793	4.81285547334444	5.32293140649519	5.40359678538957	4.60807533429752	0.151599934912133	0.736342064133942	0.933131662450445
Merged-chr2-35732215-4	chr2	35731720	35732720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35488.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	6.06463448038453	5.79771280082529	6.37439065368505	6.44925579731848	6.09706601544662	6.14023971379709	0.253043524010217	0.432365720361704	0.797325290360352
Merged-chr14-10453527-3	chr14	10453000	10454000	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308286)	promoter-TSS (NM_001308286)	-42.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	3.87799405715347	3.95192763460666	3.65009526233426	3.98661608446451	3.78041687212442	3.88350403050592	0.133337062005375	0.80131102769195	0.952920398614417
Merged-chr5-3462224-4	chr5	3461729	3462729	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-81604.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.31866081657288	5.45651538734685	4.91163095555392	4.51618022654954	4.42796118977542	4.56245596473026	-1.72249442483062	3.14223948335543e-05	0.0010715092838911
Merged-chr12-76903921-2	chr12	76903421	76904421	+	610.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 7 of 11)	MTE2a|LTR|ERVL-MaLR	58327.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.20499162416558	3.23655260373983	3.37591422775717	3.36869367562343	3.09165036251108	3.39260601530039	0.0588025676378761	0.925603711925631	0.983230173300268
Merged-chr7-90215463-4	chr7	90215013	90216013	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	49919.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.39622823018196	4.43141875067011	4.20235241474268	4.27169280637638	4.30432314681204	4.40654588349911	-0.0782794900873684	0.861798241597406	0.967996224966109
Merged-chr3-157764012-4	chr3	157763514	157764514	+	756.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161049.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	3.46979936785056	3.17559701366307	3.13674053547568	3.3609826239649	3.08661865650422	3.38450674769503	0.023113027673017	0.971762558707466	0.993783614343214
Merged-chr6-67102227-3	chr6	67101720	67102720	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64813.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.08870204493307	3.14481791020737	3.10585637945659	2.96169179843793	2.73172537992315	3.4453022935322	-0.14566286584317	0.844878623307376	0.963760118842549
Merged-chr15-61983537-4	chr15	61983024	61984024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	4.53190715008604	4.5318418540319	4.83233260277684	4.38155927481845	4.75158250170789	4.3771591338379	-0.247903472024085	0.581966183388	0.873484978987509
Merged-chr6-83008799-4	chr6	83008293	83009293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	24678.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.69503152423265	6.44471220047724	6.23373753597347	6.7883225536061	7.07586162637092	6.44133685310675	0.515628619415673	0.0954577720543618	0.411845395473366
Merged-chr8-122315147-3	chr8	122314668	122315668	+	800.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33027.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	4.09533382408123	4.20255938164576	4.21998519260542	4.22053016498154	3.83821978117906	4.37249204895877	-0.0570153214008566	0.909835994854248	0.979653930166868
Merged-chr5-143487771-2	chr5	143487271	143488271	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	B4|SINE|B4	23278.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	5.10871564062011	5.22185759872988	5.46176546449563	5.06431542165671	4.98788867765163	5.32803683133073	-0.289708312507493	0.4366612111376	0.799551248563286
Merged-chr12-17712733-8	chr12	17712234	17713234	+	965.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	L1MC5a|LINE|L1	21925.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.85953708418508	6.95084480224071	7.12538604548174	7.36816677442126	7.72035772853626	7.23223914736467	0.731278073958131	0.00528608738332617	0.063561381357197
Merged-chr9-105642957-4	chr9	105642447	105643447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081309)	promoter-TSS (NM_001081309)	-48.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	6.66250169065255	7.22169641739681	6.8783897678401	6.8101238126589	6.78926866623324	6.58451447387151	-0.325157409664126	0.252800317235111	0.650171817033942
Merged-chr8-39644749-4	chr8	39644237	39645237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2059.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.64613800938883	6.70888882310007	6.44674082804157	6.25304939213	6.46705168333002	6.45080078752829	-0.351284514243218	0.196353221193464	0.584152412637769
Merged-chr2-77197296-4	chr2	77196793	77197793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 12 of 17)	intron (NM_175465, intron 12 of 17)	-26658.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	4.75151441566421	4.9024386796646	4.61702348127763	4.58128161525787	4.61298473619519	4.72413764300377	-0.31348943663036	0.442547287384987	0.803268256673243
Merged-chr4-140699822-4	chr4	140699287	140700287	+	970.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1686.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	5.40757169910747	5.46714785325627	5.05725971228091	5.28522803944975	5.2309915470912	5.00987661773123	-0.29459854112246	0.425297498224106	0.793032706839624
Merged-chr3-136322183-2	chr3	136321683	136322683	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3883.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	5.54396967269319	5.74101402755084	5.31531185682135	5.62156851480925	5.60656078067175	5.70420843581358	0.155389166343848	0.642215082174025	0.899377820074328
Merged-chr12-3854704-3	chr12	3854193	3855193	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	7551.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.17655382255874	5.56423175538962	5.9249131298133	5.41378738948083	5.75339676207234	5.70534124476418	0.0992044292358761	0.792444492255901	0.949977808464961
Merged-chr1-45882363-3	chr1	45881845	45882845	+	957.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43249.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.53544871344791	7.62240230147185	7.57131131103932	7.55170720113663	7.59747391551987	7.33440952877988	-0.103075416861611	0.651157611304347	0.90273950784605
Merged-chr10-8771028-1	chr10	8770528	8771528	+	648.5	f0_balb.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	115042.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.35802257148081	4.01650782026912	4.45083054808736	3.93797090303752	3.85922147366066	3.88749147852202	-1.12892726949259	0.026326928925442	0.192648940465058
Merged-chr8-22166405-4	chr8	22165938	22166938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-3.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	5.50600405933164	5.35411393868023	5.49149853523	5.55707850896489	5.06972611077611	5.10661081937464	-0.363742021582213	0.322846382688066	0.71622978868066
Merged-chr6-87010771-2	chr6	87010271	87011271	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 1 of 7)	intron (NM_020045, intron 1 of 7)	935.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	5.50508393055143	5.13647669724269	5.1650536553479	4.92443333273577	4.87304905103092	4.82724042565865	-0.861030302758117	0.0235777577327406	0.180020009673874
Merged-chr5-88592976-2	chr5	88592476	88593476	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	9463.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	4.16193366202249	3.7524941339262	4.18984142271459	4.21026896695358	3.77056203181282	4.21350729967038	0.0839523140877178	0.876475460223038	0.971334744650699
Merged-chr8-75098724-4	chr8	75098412	75099412	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 4 of 4)	intron (NM_010442, intron 4 of 4)	5294.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.67622992638944	4.47869183236356	4.21409164597401	4.57691390995157	4.40014152385398	4.67886285601267	0.171271642765486	0.705965517110943	0.922834459892351
Merged-chr15-101983748-1	chr15	101983248	101984248	+	675.5	f0_balb.idr	Intergenic	Intergenic	20594.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	6.36313677687692	6.57718685301361	6.65215102566551	6.40352851979195	6.81937821914941	6.69510679859309	0.19646921512604	0.48589808781904	0.827597242569477
Merged-chr15-59426957-3	chr15	59426459	59427459	+	837.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	52761.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.05432171517183	4.00826480081483	3.93747523084812	3.64503409569378	3.53781272138909	3.75410104684795	-1.19341903724262	0.0246447255152002	0.185360057910944
Merged-chr10-22000721-4	chr10	22000158	22001158	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161850)	TTS (NM_001161850)	5992.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.73043495171158	4.5995139131657	4.88952090426876	4.33477461605725	4.70205071794074	4.69999807922881	-0.346434783636063	0.421325396804147	0.790226764066497
Merged-chr10-81404240-2	chr10	81403740	81404740	+	792.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008688, intron 8 of 9)	ZP3AR|Satellite|Satellite	-5335.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	4.13665481649967	3.98996219668653	4.3254981724841	4.11126648625332	4.16738311271381	4.39174746084595	0.20365190660393	0.67198050897884	0.910719060610024
Merged-chr12-85973733-4	chr12	85973221	85974221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	105320.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.87071380474489	6.90063379166352	6.64992671911792	6.35093004176025	6.49117084798206	6.21230122967855	-0.718849176896521	0.00816952550654852	0.0873403415583822
Merged-chr13-98817443-4	chr13	98816933	98817933	+	915.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1984.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.35328483280265	4.76714136447957	5.007048083695	5.28032107422398	5.34667702112092	5.17817110061525	0.418071836861697	0.287008476176967	0.684323804399215
Merged-chr6-116694177-4	chr6	116693679	116694679	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-20343.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	5.59371921226457	5.48948786150263	5.61895670098628	6.02846822171295	5.9675158653616	5.86475743257156	0.712948802546595	0.0198572798509086	0.160634312836321
Merged-chr10-57761506-4	chr10	57761006	57762006	+	928.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23417.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.01695438423376	7.18296881131555	6.83400499222022	6.49109119053072	6.99005410227623	6.40285367892492	-0.545494635930299	0.0685364538555334	0.342445172781615
Merged-chr15-102469218-2	chr15	102468718	102469718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1414.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	2.41670333389935	2.42360165486869	2.49089915665892	2.7321838786916	2.61020478724471	2.75493742332472	1.53494176756705	0.052666760419805	1
Merged-chr5-38220469-4	chr5	38219975	38220975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	-7.0	NM_025281	17089.0	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	5.66263125515737	5.76768118825259	6.00423936539329	5.93796711541665	5.6358713826598	5.81040417900955	-0.0255563973178039	0.936549775243179	0.986037792257163
Merged-chr11-101467622-4	chr11	101467131	101468131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-544.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	6.72986071237655	6.75349975219235	6.33407265598026	6.2444043925596	6.36130578462949	6.01227582870527	-0.656827847515071	0.0267206311173012	0.194537603815592
Merged-chr18-53265078-4	chr18	53264592	53265592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	RLTR30D2_MM|LTR|ERV1	19430.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.17673188627367	8.30622887667217	7.84888095306047	7.93093393663565	8.26988681017037	7.87140060004932	-0.124071918406753	0.620257034152801	0.89003306426934
Merged-chr2-32083321-3	chr2	32082811	32083811	+	917.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151493, exon 2 of 6)	non-coding (NR_151493, exon 2 of 6)	394.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	6.65614480881706	6.81644521204787	6.86114266755445	7.16103208245592	7.36927545055516	6.71488062924701	0.527207250177877	0.0628085775103099	0.32594124007444
Merged-chr8-88295240-2	chr8	88294740	88295740	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 2 of 27)	intron (NM_001037724, intron 2 of 27)	1036.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.585357047743	5.0804148040968	5.50584715666508	4.95462374667358	4.88080890677027	5.20981654827769	-0.180720871711902	0.686702987078024	0.91686749275976
Merged-chr2-91192136-2	chr2	91191636	91192636	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 3 of 9)	intron (NM_001355279, intron 3 of 9)	2899.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	4.57570714263352	4.71432513475202	5.3454236591319	5.39655766801333	5.74078791976306	5.60021499614427	1.38046970259137	0.000945753254072731	0.0172348306537196
Merged-chr2-102981032-3	chr2	102980533	102981533	+	788.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79368.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.10340351351825	2.84927061594983	2.96989026435132	3.02454020497968	2.93147183054232	3.0426163366047	0.0870854972885196	0.898366409251084	0.976339538755983
Merged-chr8-107031265-4	chr8	107030799	107031799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126165)	promoter-TSS (NM_126165)	-27.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	6.6287679190792	6.23057770080472	6.48910925745279	6.32238457068022	6.04635755020848	6.34846301897037	-0.364021462721437	0.218280790606824	0.61244631861386
Merged-chr19-34573093-2	chr19	34572593	34573593	+	794.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355262, exon 3 of 3)	exon (NM_001355262, exon 3 of 3)	-10436.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	3.3660463453303	3.19677457763695	3.25302095454395	3.48576502393155	3.23551156764264	3.49240179247865	0.510091349490901	0.407877742791136	0.781926100186554
Merged-chr2-121417187-1	chr2	121416687	121417687	+	543.0	f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	B4A|SINE|B4	3285.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	2.97033107533528	3.38839801158766	3.43043889597665	3.49407920307054	3.35491732760176	3.44739230124794	0.599773274697856	0.35889117184512	0.74519810754794
Merged-chr7-115616155-4	chr7	115615656	115616656	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025559, intron 7 of 15)	intron (NM_001025559, intron 7 of 15)	185453.0	NM_001277328	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	5.23839413295459	5.68335925621484	5.29517028050157	5.14481221951204	5.32250381125367	5.15864308130083	-0.420485751712655	0.253581371567261	0.650953253698052
Merged-chr2-126607705-4	chr2	126607194	126608194	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 2 of 11)	intron (NM_008230, intron 2 of 11)	10984.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	5.93006813459321	5.65520493049331	5.79791238615956	5.76904170791195	6.03555079346122	5.61534508748707	0.0596587431104127	0.855016423461685	0.966042590310271
Merged-chr3-109341748-4	chr3	109341246	109342246	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1063.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.34104239425891	5.26367157626543	5.37476655058612	5.21298578303976	4.88452962699137	5.01305880312173	-0.586583740011626	0.106636869430058	0.435916169724877
Merged-chr4-141873860-3	chr4	141873382	141874382	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	1038.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.61905267893364	7.35829287068824	7.53412862702291	7.93522518033806	7.82112914563336	7.84107271200357	0.51937749752117	0.0208875190495478	0.166157618075982
Merged-chr14-63126632-2	chr14	63126132	63127132	+	938.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	4170.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.68375743811899	8.02218294856609	7.40921024315653	7.91140326830322	8.03864925773964	7.45504444428259	0.136791065520884	0.629728661562786	0.894377678440432
Merged-chr9-57157522-2	chr9	57157022	57158022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025417, intron 1 of 7)	intron (NM_025417, intron 1 of 7)	777.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	6.02217889702938	6.73513419076397	6.38679824141307	6.07333584066293	6.22145529968259	5.90232596419387	-0.56405438217236	0.0901228400254186	0.399177114491378
Merged-chr2-157448026-3	chr2	157447524	157448524	+	906.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	B3A|SINE|B2	23731.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.83272801850451	5.54934799485417	5.22364927521867	4.89131081754055	4.44534244479663	4.75927118840109	-1.8218891083075	9.28990290547876e-06	0.000375422166565846
Merged-chr11-120510404-2	chr11	120509904	120510904	+	853.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18567.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	5.39222491201921	5.02558386227989	5.39024023355739	5.26867772041804	5.08055746518174	5.10423951195256	-0.248181634231011	0.501914444771966	0.836102044456171
Merged-chr1-170795965-4	chr1	170795468	170796468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71803.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	5.66431376216337	5.62933866636339	5.828690089791	5.29786227579651	5.7108861063938	5.58254854107322	-0.289725828773977	0.389322151358504	0.769015431167891
Merged-chr17-56765076-6	chr17	56764547	56765547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360405, intron 1 of 11)	CpG	296.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	7.9557835473021	7.73029904698279	7.71347685271148	7.78251272410473	7.76392169167436	7.87891730398558	-0.00156959370969996	0.994361030185859	0.998918571480046
Merged-chr11-113749852-2	chr11	113749352	113750352	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	1308.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	2.70922230233971	2.74355292128937	3.07595405790637	3.00091988214038	2.72527725617641	3.14747920601287	0.559545814311621	0.452437675237406	0.809443364619324
Merged-chr14-47361936-7	chr14	47361391	47362391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-11969.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	7.36111978094474	7.46278532036884	7.19306064424313	8.15530908651721	8.45433088838777	8.01357068787908	1.25838026139981	2.46891997740815e-07	1.57662235978648e-05
Merged-chr7-27591011-2	chr7	27590511	27591511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-541.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	6.18614934319898	5.99391183820767	6.2384434918527	6.36609921502481	6.5254608932171	6.33818918857847	0.467017846253028	0.0963978315132946	0.413883940379681
Merged-chr16-4961144-2	chr16	4960644	4961644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 1 of 16)	B3A|SINE|B2	3093.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	4.43698631483307	4.4979848688642	4.49558733646746	4.34538089972482	4.55105987736472	4.71835576322273	0.162504264714839	0.707278342351004	0.923301165835305
Merged-chr17-56075067-4	chr17	56074555	56075555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024432, exon 2 of 12)	5' UTR (NM_024432, exon 2 of 12)	4278.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	7.6749500752701	7.67849141116858	7.45164613686148	7.58240445649328	7.67437140824487	7.2942497462304	-0.109485994614603	0.650788608282367	0.902679133140395
Merged-chr7-44055679-3	chr7	44055150	44056150	+	843.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020268, exon 3 of 5)	exon (NM_020268, exon 3 of 5)	3360.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	2.51792443090612	2.31356569508242	2.58270285896086	2.12553102069453	1.99501312748274	2.34414387260631	-2.4677009544459	0.0173622570093781	1
Merged-chr6-134933133-2	chr6	134932633	134933633	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	4041.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	3.82434629176358	3.77633145920471	3.78104145700549	3.75418605197193	3.8270757892675	3.90041920232729	0.101581348915199	0.844320182111813	0.96373428957366
Merged-chr3-84570632-3	chr3	84570142	84571142	+	729.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	11983.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	4.56919005775521	4.83681011122447	4.89072995879848	4.96015299698497	5.08154805632386	5.39426953363631	0.829216241174096	0.0386285199428781	0.243629340362844
Merged-chr17-50535148-2	chr17	50534648	50535648	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	Lx7|LINE|L1	25601.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.20522952775959	3.95965688892925	3.9373946479429	4.00649049070016	3.94613225573354	4.10429786297982	-0.0861251424701233	0.86248239229851	0.96807605498315
Merged-chr14-79533903-3	chr14	79533387	79534387	+	799.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	18213.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	7.17931665511028	7.15558199492832	7.07673207654645	7.22640900967503	7.48161702498448	7.39353792960793	0.347576165274614	0.141387250995735	0.502136257665845
Merged-chr8-120737453-4	chr8	120736972	120737972	+	979.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008320, intron 1 of 8)	intron (NM_008320, intron 1 of 8)	1114.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.04631026078546	7.35996281881436	7.01311889365248	7.54009346808476	7.67327805487273	6.95476937273434	0.417805939211367	0.152302498835042	0.520263755512759
Merged-chr8-11470961-2	chr8	11470461	11471461	+	819.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-6968.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.90503411527475	4.38546747564814	4.11511823399004	4.46890883435001	4.28956583280529	4.536230421491	0.728304347539667	0.137506648329422	0.495624554674513
Merged-chr13-70038454-3	chr13	70037930	70038930	+	864.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-10082.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	2.46447270376568	2.39787984044916	2.49216628168567	3.11169290772091	3.00344541308785	3.0250226295142	4.13906087011864	6.0342830353854e-05	0.00184867681446373
Merged-chr3-34033260-2	chr3	34032760	34033760	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	RSINE1|SINE|B4	13181.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	5.11615742468899	5.39370186286634	5.26525300439747	5.12284519449041	5.57271055465155	5.39093180839786	0.233259515448099	0.524416335873381	0.848678125006852
Merged-chr8-78510393-4	chr8	78509891	78510891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104094, intron 1 of 9)	intron (NR_104094, intron 1 of 9)	1063.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	6.16485464093451	6.01767364726476	5.83196168428023	6.38793844326347	5.99436551957977	5.47623751107825	-0.0011455466715275	0.997502963056775	0.999496959972402
Merged-chr17-10394914-7	chr17	10394420	10395420	+	924.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61296.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	5.98649882269448	5.75994130388871	5.65340922217499	5.64617743568228	5.54307782693768	5.71580436255111	-0.336859426072702	0.292447576162626	0.689679830251773
Merged-chr12-26466846-2	chr12	26466404	26467404	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2311.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	4.25910733047922	4.17880101913433	4.18828155244859	4.50769901820832	4.72012691935822	4.48579927423028	0.96316786722985	0.0299103450782876	0.208500903917676
Merged-chr4-152178077-4	chr4	152177568	152178568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133348)	promoter-TSS (NM_133348)	-32.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	6.50909479942811	6.39322714720158	6.23370634709985	6.59936714776992	6.25293498461183	6.16358568652245	-0.0546638047016073	0.852448587532541	0.965385693881201
Merged-chr1-36861833-2	chr1	36861333	36862333	+	939.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	77694.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.11531771799304	2.72598638040129	3.17699869849948	2.87161080615769	2.85935028214797	3.02339538230064	-0.470239610852891	0.516707132364959	0.844296391152365
Merged-chr19-16050333-3	chr19	16049826	16050826	+	997.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65251.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.6946675200032	4.99331413435818	5.02719235957726	6.15672126936681	6.50228328210555	6.09403943023808	2.58356730070446	3.13024046234685e-13	6.54424744700896e-11
Merged-chr5-137749378-1	chr5	137748878	137749878	+	584.0	f0_balb.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	3409.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	4.75874884518795	4.43727101080949	4.41856890172252	4.62928488432776	4.65198228968591	4.65727098481463	0.219512463393883	0.60747976610719	0.884581207370863
Merged-chr10-21908160-7	chr10	21907656	21908656	+	759.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25972.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.60279666138294	5.78368006401497	6.31466720887297	6.10594796442329	5.99925802324342	5.82281617496082	0.106851513569341	0.758232030191804	0.940104678746179
Merged-chr11-119270837-1	chr11	119270337	119271337	+	718.0	f1_c57bl6.idr	intron (NM_008064, intron 2 of 19)	intron (NM_008064, intron 2 of 19)	2874.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	3.3231656986637	3.35799222687205	3.87390520527288	3.44845329095207	3.38650408164226	3.55979267811328	-0.254783187163027	0.681483302548061	0.914693263933768
Merged-chr6-114892270-4	chr6	114891753	114892753	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	29568.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.43140558165301	6.29536998436107	6.30493936284693	5.73082667245898	6.11681262118494	5.8257835000292	-0.733256342714514	0.0157543224413274	0.137467036671348
Merged-chr18-10610276-4	chr18	10609788	10610788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081222)	promoter-TSS (NM_001081222)	64.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	7.99687237915293	8.20565954750773	7.83936953132763	7.78837529946252	7.63594920127119	7.67698925678909	-0.467960339348481	0.0408869737079177	0.252177252115367
Merged-chr6-66896799-1	chr6	66896299	66897299	+	1000.0	f0_balb.idr	promoter-TSS (NM_001177558)	promoter-TSS (NM_001177558)	-92.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	6.25735814424669	6.19665790305455	5.69370827473784	6.14559806359021	5.78286311903658	5.75710532112579	-0.303523017244991	0.369133095138194	0.753878426844475
Merged-chr2-138258123-4	chr2	138257636	138258636	+	933.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1552.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.85598157038923	4.83812372981017	4.87326954226742	5.01202672458707	5.31924215436014	4.65112287533595	0.401957677128041	0.333394688440413	0.724355241927838
Merged-chr11-118424162-2	chr11	118423662	118424662	+	636.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	3.72590872926743	3.99200630004507	3.8266933529536	4.01831630482918	3.93227858109994	4.18209731270388	0.561866526044318	0.275056905095922	0.672433157810008
Merged-chr10-19491982-3	chr10	19491474	19492474	+	740.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152784, intron 2 of 3)	intron (NR_152784, intron 2 of 3)	-2669.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	3.82327530511689	3.92663422141172	3.59502916342222	3.71616212064872	3.55751709924716	3.6107237648745	-0.5657113705148	0.307608603408747	0.703744388869902
Merged-chr9-59725746-4	chr9	59725242	59726242	+	937.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17978.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	5.97112363737064	6.34781744710667	5.84545184531563	6.21897962196743	6.11713162186693	6.20957215986933	0.160041596233117	0.605364578923183	0.88352351689788
Merged-chr5-100615736-3	chr5	100615241	100616241	+	838.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43536.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.44624815407563	3.59909200331409	3.63900539783456	3.89759311976961	3.92273917218316	4.09911464385258	1.36122758295668	0.0121228169087784	0.115098341476419
Merged-chr1-54585403-4	chr1	54584909	54585909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27725.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	5.50157830462018	5.54343545268041	5.8735868293583	5.58666075075435	5.67393961220452	5.81817779381747	0.0994039404876441	0.76293983286951	0.941663714620562
Merged-chr13-111936147-4	chr13	111935641	111936641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68205.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	7.50896650578622	7.3570833266421	7.3615501881178	7.36751834846689	7.41065087654137	7.31832970486473	-0.0656697589900411	0.772739363530424	0.943848608021176
Merged-chr3-89378695-6	chr3	89378244	89379244	+	980.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355206, exon 4 of 4)	3' UTR (NM_001355206, exon 4 of 4)	8927.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.87607254290769	4.00032268518983	4.26073759056142	4.01585821174373	4.20634957963838	4.19748205789034	0.280840543016266	0.570592792740169	0.869253690275099
Merged-chr11-49994645-4	chr11	49994128	49995128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30703.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	3.48250916949636	3.34230051870118	3.17468231785015	3.50617636436264	2.97730656923743	3.42367752527797	-0.0788414786825175	0.907707118968462	0.979037236663477
Merged-chr13-92038216-4	chr13	92037745	92038745	+	852.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50203.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	4.11246162973602	4.18055608315808	4.28154708581148	4.00512691629961	4.182904962893	4.34818174348353	-0.0220344421458572	0.963017685097187	0.991018409557203
Merged-chr8-122561393-4	chr8	122560889	122561889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6626.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	6.16036618437855	6.13275772852526	6.57065365993043	5.95361462955768	6.10578686384848	6.46701216779991	-0.182097361870213	0.569159978784405	0.8688875602138
Merged-chr4-8888486-4	chr4	8888003	8889003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137179.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.25368358981311	3.3053345102518	3.22505946784286	3.30802825408944	3.36266076703956	3.35423932926974	0.31456179399568	0.603219649487951	0.882544198306255
Merged-chr5-140818806-3	chr5	140818301	140819301	+	708.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	11630.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	4.90899119416371	5.22968366133314	5.37985470388108	4.85686036157291	4.90130112546378	4.69230094668869	-0.758354478395772	0.0574000660395533	0.309178750083676
Merged-chr5-64463822-4	chr5	64463333	64464333	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040681, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	4109.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	2.84701313686183	3.12243697903988	3.017987263325	3.2112137974537	3.21366891043506	3.32154069876405	1.07499343200455	0.108857386511094	0.44079363530285
Merged-chr15-63704882-4	chr15	63704387	63705387	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103852.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	2.95597397102845	3.13060885778724	3.23013726973044	3.01605236512802	2.8286409367153	3.01733448103504	-0.714204897679235	0.297208938637052	0.69386498175224
Merged-chr7-24608287-4	chr7	24607795	24608795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023154, intron 6 of 7)	intron (NM_023154, intron 6 of 7)	-3033.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	2.81061974149346	3.02383663940822	3.00200109480517	3.25036287279788	2.88059038701351	3.19149556947289	0.749083519333186	0.284774208888931	0.682457480121006
Merged-chr13-63255829-4	chr13	63255273	63256273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	15744.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.93258786099433	6.02611523307571	5.42688102865767	5.7037780312659	5.78972021711015	5.95717145039533	-0.0347556833891139	0.918861701738201	0.981844538421417
Merged-chr12-102420602-2	chr12	102420102	102421102	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	19211.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.35834611929413	5.59959906510606	6.1769270456183	5.82212359967713	5.3544866635916	5.72020263390327	-0.192879809702161	0.621832386474135	0.890864828060259
Merged-chr15-76473740-2	chr15	76473216	76474216	+	703.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	3553.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	2.68200855486314	2.65100186166308	2.8976007591478	3.0641603449107	3.11471815099032	3.46607293559255	2.4168039802457	0.00155620198541612	0.0254205411981988
Merged-chr4-72199145-4	chr4	72198665	72199665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 2 of 17)	intron (NM_001285530, intron 2 of 17)	1728.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	6.27270364870267	6.1686379703267	5.77742029788338	5.74265386725095	6.01310878417808	5.86618567066963	-0.377567603176515	0.238133998931609	0.634759539438151
Merged-chr11-50211744-4	chr11	50211231	50212231	+	977.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	-911.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	7.93797057112494	7.70688949434651	7.56020515975844	7.74287175450784	7.80205442388954	7.29659009436284	-0.154338239997612	0.553292812396805	0.862238984416102
Merged-chr14-61554316-2	chr14	61553816	61554816	+	843.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2570.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	3.5945461184727	3.67441120514365	3.75044381506764	3.88277511251474	3.92054627176078	4.23473665449464	1.09193989573622	0.04043203451215	0.250541311266531
Merged-chr16-21692481-2	chr16	21691981	21692981	+	683.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2184.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	7.11395586490083	7.51701927295717	7.13137543589266	7.26957151401296	7.3680534032494	6.74598800037211	-0.158194878825664	0.586818609401117	0.875655897836385
Merged-chr18-60803723-4	chr18	60803223	60804223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-126.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	6.95278117901687	6.86159986900186	6.96822150320344	7.27504207993914	7.4694771759366	6.86513821480763	0.47342645293882	0.0802540157564245	0.374819047095901
Merged-chr11-100545622-4	chr11	100545092	100546092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-40.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	7.21314457022384	7.24479440793994	6.51935436669185	7.17709060553835	7.45778947309331	7.01286330980665	0.285137481830667	0.35524765949089	0.742212688350285
Merged-chr5-123139906-2	chr5	123139406	123140406	+	640.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	7.56723474944567	8.17917800816246	7.72788061982989	7.93264564214799	8.25551632204709	7.92710088941384	0.276355570057389	0.303338529566188	0.699902971652469
Merged-chr7-112225798-4	chr7	112225321	112226321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177282)	promoter-TSS (NM_177282)	-15.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.39827875676815	4.45913334773828	4.41906029219571	3.64031146804838	3.71760998968012	3.88667482096939	-2.0652767672764	5.67792369807213e-05	0.00175327407313656
Merged-chr6-122308766-4	chr6	122308247	122309247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010749)	promoter-TSS (NM_010749)	27.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	7.38541218862886	7.8342153565322	7.53161374862071	7.57985094785547	7.79637639840417	7.39976564348134	0.0119993027852597	0.963038182173453	0.991027246064565
Merged-chr15-28159111-4	chr15	28158591	28159591	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44675.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	3.4513591036011	3.58272298719421	3.43562954148047	3.63291443889989	3.53908917665643	3.33141280441059	0.0650885310398713	0.911994823790177	0.980227153274943
Merged-chr11-59165873-4	chr11	59165387	59166387	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2142.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	5.45769461201776	5.22200731468449	5.15050659364248	5.12399184778649	4.94490960256306	5.430786038935	-0.245615990357173	0.516775744278493	0.84431023836959
Merged-chr5-137510694-3	chr5	137510191	137511191	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8189.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	6.46267215393542	5.83347067244795	6.09102286529725	6.15878754323245	5.41905577389064	5.68270190948917	-0.635853832223446	0.0917753980453881	0.403468448278156
Merged-chr11-51935252-4	chr11	51934745	51935745	+	943.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-32386.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	5.08096128620375	4.79461423221519	4.98583670859483	4.92414211984567	4.76317865719914	5.05019202452879	-0.108969002475555	0.780282943367701	0.945976443458414
Merged-chr1-85985925-4	chr1	85985426	85986426	+	935.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24871.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	4.53651600614895	4.28390455197262	4.31103036267223	4.90142061024315	4.85913075105461	4.56471439487652	0.978108482742227	0.0244570762643084	0.184315225233273
Merged-chr6-149343953-4	chr6	149343431	149344431	+	979.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34517.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.83420603717393	3.55146205879993	3.87033844196965	3.78931490560631	3.96744840806235	4.16718539152631	0.701381407568192	0.194078146926735	0.581296921414137
Merged-chr17-5574082-2	chr17	5573582	5574582	+	835.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	81482.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.86824913472832	8.0435800010207	7.96403797177227	7.9204731355567	8.45261320364612	7.65988048042872	0.149585094218521	0.588812034187176	0.876650937479947
Merged-chr15-101135392-2	chr15	101134934	101135934	+	801.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277259, exon 5 of 12)	exon (NM_001277259, exon 5 of 12)	6912.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	4.49940797925185	4.39075109390668	4.45618244644201	4.56923290962694	4.60637675671975	4.97038066154309	0.650765143660376	0.131550839899256	0.484908897350639
Merged-chr2-172437125-2	chr2	172436625	172437625	+	772.142822	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3453.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	4.50130003011048	4.65794320535193	4.45641919276194	4.23672727696912	4.19587890242219	4.25532279516381	-0.834202217619248	0.0599080059805968	0.316866930960178
Merged-chr10-86065929-1	chr10	86065429	86066429	+	554.0	f1_c57bl6.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-29925.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	4.4801204408996	4.50590543604747	4.64174209052318	5.46770926011312	5.25337069982716	4.95180622534476	1.5778611333225	8.84543275855899e-05	0.00255914731910353
Merged-chr17-56938349-1	chr17	56937849	56938849	+	540.0	f1_balb.idr	Intergenic	Intergenic	-2961.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	4.4769185580666	4.38629761374142	4.32134266574267	4.12724376322592	4.50222852549219	4.43286244754519	-0.0812754578522184	0.859028176472951	0.967134594936357
Merged-chr7-28376516-4	chr7	28375998	28376998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011756)	TTS (NM_011756)	2730.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	7.94864926483029	7.92105501514726	7.63862938503674	7.95380073563972	8.20575874661638	8.16230943033364	0.372870130168432	0.103844665122514	0.429650782930444
Merged-chr2-6323320-4	chr2	6322799	6323799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	CpG	542.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.17173844743924	6.94518460856858	6.50691802826774	6.87582106037924	6.56126737197029	6.34578044155146	-0.459226154894943	0.141350627497428	0.502119843364898
Merged-chr10-95290935-2	chr10	95290435	95291435	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32774.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	5.41782923498533	5.12490251387656	5.17517504051134	5.27627807570106	5.292880487674	5.30443304944533	0.0823713171098353	0.8153155258311	0.956370078970016
Merged-chr3-27194519-2	chr3	27194019	27195019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	PB1D10|SINE|Alu	11515.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	7.3826926425048	7.38445663623441	7.03024649974577	7.03264953722175	7.23185645734265	6.90104244728142	-0.319446351878058	0.218471900554568	0.612691362412513
Merged-chr11-106157851-2	chr11	106157351	106158351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	2076.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.4981803216286	3.4671422027099	3.57414120189544	3.87216859292094	3.42106640142865	3.79661464251381	0.68717199713501	0.239626220123459	0.6365755227646
Merged-chr3-65318907-2	chr3	65318407	65319407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	intron (NM_001357358, intron 7 of 13)	-16222.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	3.83662415506121	4.23396300903525	4.34251929385567	4.19991754925659	4.66671567803475	4.3668371043963	0.749395988568916	0.139485700871017	0.499084106249493
Merged-chr7-28374284-4	chr7	28373811	28374811	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	5.75070621147842	5.49399980153918	5.75629363100141	5.60858629508195	5.63393697726601	6.04444861968505	0.179008799464051	0.594752779246953	0.87924603206665
Merged-chr4-88722440-5	chr4	88721881	88722881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172871, exon 1 of 1)	5' UTR (NM_172871, exon 1 of 1)	127.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	8.31655175882755	8.52102216293674	8.00545200873661	8.17352963394277	8.30038338827414	8.11296870116353	-0.146655429133556	0.535293003806879	0.853511885485043
Merged-chr6-70806107-4	chr6	70805657	70806657	+	883.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13982.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	2.91704749974312	2.84032678740998	3.06499624375693	2.86655722794502	2.97799722736492	2.70814953686434	-0.379244520233001	0.601158794826599	0.881884913086671
Merged-chr7-128320639-4	chr7	128320140	128321140	+	791.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-22509.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	5.2441877565286	4.69582386228541	4.6799671218982	5.06406303374184	4.9365291387759	5.01982487855523	0.203048396110146	0.628306503976197	0.893585744758681
Merged-chr5-117509754-4	chr5	117509257	117510257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	95755.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	2.22095236529538	2.57768221960635	2.55143781252237	2.48742791586529	2.40953777693617	2.68619727198509	0.412844055805076	0.630077986317181	1
Merged-chr6-22453304-4	chr6	22452800	22453800	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97219.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.29463645305129	3.29492905600349	3.3277054873764	3.3506167380491	3.4810299166062	3.39911207145379	0.428090505708097	0.471874209233143	0.820369595325449
Merged-chr18-66469519-3	chr18	66469020	66470020	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	10916.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.40358361328934	4.14206595802251	4.14601165393489	4.31023480168012	4.30233486168577	4.21525724270747	0.103349480347966	0.823891391909953	0.958451755471188
Merged-chr1-36065032-4	chr1	36064537	36065537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3363.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.67088457947067	5.54001878997726	5.35324367853229	5.69530360295354	5.66597382003466	5.28308929283367	0.0691223331263485	0.842168746328439	0.963002495523594
Merged-chr4-53413166-2	chr4	53412666	53413666	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-27247.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.18543899532049	3.89676710275628	3.86402981326505	4.08271029279653	3.96416811388831	3.98607227963129	0.0444847978691865	0.930003056257228	0.98436656024861
Merged-chr5-139338050-4	chr5	139337533	139338533	+	925.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_197980, exon 3 of 3)	3' UTR (NM_197980, exon 3 of 3)	7133.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	6.11439165775737	6.07118592828093	5.9693008997806	6.11304085640421	6.3841068710537	6.03076035032548	0.237170130872101	0.423361636305551	0.791975607772308
Merged-chr10-70224803-4	chr10	70224327	70225327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20163.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	5.43268557675046	5.41701822295345	5.47947756883061	5.51938241387466	5.30903380908662	5.75214561977811	0.162063102339253	0.636604605839994	0.89720767300409
Merged-chr17-49429281-4	chr17	49428775	49429775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	911.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	6.71041588395684	6.95800526633713	7.19538266792087	6.7350163062198	6.7440457841592	6.95893635372914	-0.232901219136429	0.390994099787028	0.770112153342334
Merged-chr2-156415867-4	chr2	156415364	156416364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-5045.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	5.77123013089712	5.27216397709924	5.66536314385137	5.88697909518417	6.00184632515248	5.52746007824845	0.450113972318734	0.204990541220225	0.595693287839612
Merged-chr10-68281249-1	chr10	68280749	68281749	+	543.0	f1_balb.idr	Intergenic	Intergenic	-2523.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.12438247977946	4.00269472041754	4.15151883827124	4.15581492789641	4.05675545937717	3.87316490641904	-0.150742158349823	0.759236348481359	0.940311236380535
Merged-chr10-67229985-2	chr10	67229485	67230485	+	699.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 10 of 25)	exon (NM_001242396, exon 10 of 25)	44235.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.93187331779912	4.14485409269488	4.26263020610845	4.08510334497169	3.94915744948305	4.19938116768461	-0.114882088868414	0.815710787364729	0.956465653447018
Merged-chr13-110394975-4	chr13	110394419	110395419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-125.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	8.19163075792158	8.19220291962114	7.92798862967017	7.71150372401078	7.79961510054461	7.67896689819341	-0.546532047048887	0.0134615921526445	0.123491460655759
Merged-chr9-44395209-2	chr9	44394709	44395709	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-1718.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	3.33284966521243	2.89600457067907	2.99196376194897	3.0625766000959	2.95742805638241	3.29236810481847	0.0672847334618631	0.92419724986725	0.982917919313605
Merged-chr14-57772621-4	chr14	57772104	57773104	+	953.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3d|LINE|L1	-25585.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	3.22112276465895	3.27323654532365	3.24798794277285	3.19274281896529	3.28998990078163	3.31924190136241	0.0819029595413137	0.893845562545413	0.975280227461205
Merged-chr17-33562057-2	chr17	33561563	33562563	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6356.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.15512197500854	5.31908666964944	5.58780620530559	5.61389774463221	5.30574465032862	5.59688526751197	0.291803110887631	0.414119699940285	0.785619844340787
Merged-chr16-44137718-2	chr16	44137218	44138218	+	619.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	1541.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	6.8487333102329	6.82402812670493	6.56181214120446	6.95808763060741	7.23274499149807	6.52797919204791	0.300931059490776	0.312788029339773	0.707413942140844
Merged-chr6-115813588-2	chr6	115813088	115814088	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-4845.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	2.36762484626844	2.42336426302181	2.50963940509054	2.29375605764048	2.31970551763466	2.32864762806872	-0.779132097890615	0.346602273150014	1
Merged-chr10-117150126-4	chr10	117149672	117150672	+	948.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	3.84556971203328	3.64998574228395	3.99781109713836	3.94815921816664	3.68786361513634	3.92477878580862	0.0685975589466902	0.898180404209851	0.976261391798139
Merged-chr10-117820625-2	chr10	117820125	117821125	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 4 of 7)	intron (NM_024457, intron 4 of 7)	25349.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.08997717968883	5.36634685972443	5.59796505595348	5.42229470646162	5.31342693803987	5.60780104240656	0.17099720211681	0.637155376198634	0.897338937840938
Merged-chr16-33928838-2	chr16	33928338	33929338	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	38200.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.78412648264269	3.7364549232556	4.31991834311693	3.65779624647182	3.55691321186387	3.66930901803532	-1.09359911158684	0.0569264633539523	0.307580335243874
Merged-chr4-105696969-2	chr4	105696469	105697469	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	539622.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.12720325837963	3.13780697269131	2.99768513651958	2.71588483985084	2.82609010426209	2.88721979880359	-1.39563133265095	0.0508676124610549	0.287250348411391
Merged-chr17-47441534-4	chr17	47441034	47442034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	-4159.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	3.93433123070431	3.75332016289469	3.33000437812279	3.69757410719704	3.60382272265465	3.75267319321622	-0.0687095262417482	0.90964284392051	0.979584580182197
Merged-chr9-70851975-4	chr9	70851463	70852463	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	82845.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.07728122583641	4.22854707716901	4.03124527524137	3.73734327648242	3.97282187334744	3.67805847373476	-0.923018755635364	0.0814658832636158	0.377528763503281
Merged-chr2-166654157-4	chr2	166653592	166654592	+	859.223206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	59740.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.14024502163569	4.65908065989218	4.8045321054346	5.27828962719034	5.00651050462207	4.74827065268737	0.315467623926776	0.456475358560183	0.811676496101629
Merged-chr16-91747991-2	chr16	91747491	91748491	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	18620.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	2.4155980397881	2.52093592368808	2.88197073501073	2.36175797792058	2.27311638062049	2.7274050519507	-0.874593929416824	0.319099939809687	0.713083570990508
Merged-chr8-71559102-4	chr8	71558600	71559600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100462)	promoter-TSS (NM_001100462)	-229.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	4.76122762574976	4.90662952337479	4.7858067265076	4.68447168592525	4.72610722465843	4.8134489627851	-0.190536065358261	0.627848073165956	0.89339186113949
Merged-chr2-91725694-2	chr2	91725194	91726194	+	915.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4444.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	5.40512449822421	5.26635304930988	5.40398674046646	5.27926934073012	5.52981588802628	5.49587209300144	0.164801309053315	0.627827664526911	0.89339186113949
Merged-chr7-16891763-4	chr7	16891258	16892258	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010320)	promoter-TSS (NM_010320)	-28.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	2.87251836967117	2.79416569960212	3.03690757029525	2.93175154502655	2.68171190384299	3.21793519212735	0.258244645011886	0.726736410789317	0.930008582107804
Merged-chr17-51785101-4	chr17	51784590	51785590	+	957.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	26964.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	4.17926399975636	4.13817083586524	3.80321279334059	4.43098372313182	4.1925074981717	4.14213000036009	0.561528039365971	0.265341371487424	0.663104836467744
Merged-chr13-119689266-1	chr13	119688766	119689766	+	541.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-1085.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	3.13672487678599	3.23985038896758	3.26878290463017	2.96809348288231	3.02191171494065	3.22929765052975	-0.623332295048576	0.340066004343415	0.729678745955462
Merged-chr6-134042094-3	chr6	134041597	134042597	+	804.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	6397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.43227839338055	3.69650445244367	3.55408580577934	3.46283030081273	3.56802521460265	3.34071766441595	-0.362505150123389	0.539881170683652	0.856187246516836
Merged-chr13-8677394-1	chr13	8676894	8677894	+	1000.0	f0_balb.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	193650.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.77444533569044	3.93661892782939	3.74698688408405	3.50380400195078	3.0804444587635	3.71551077539483	-1.30920098005062	0.0440987600879206	0.264257211814872
Merged-chr8-110970360-4	chr8	110969836	110970836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	27487.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	6.33736273966971	6.52326709614583	6.66445059919894	6.67719950321643	6.76105212081718	6.26353033030451	0.140790150490147	0.629771015242349	0.894377678440432
Merged-chr13-100407635-1	chr13	100407135	100408135	+	775.0	f1_balb.idr	TTS (NM_008670)	TTS (NM_008670)	45229.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	2.87740592851846	2.96015195231156	3.22066190510271	2.91542280558438	3.00194799541205	3.12706902679246	-0.0270294353553415	0.968579376563026	0.992811398801848
Merged-chr3-8929962-4	chr3	8929456	8930456	+	916.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-6099.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	4.28105329444536	4.34020303958842	4.25565711391123	4.0943829874463	4.26198231346288	4.03515941265524	-0.415850236287785	0.375881526859089	0.758951282467405
Merged-chr6-87518804-4	chr6	87518327	87519327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	14432.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.46932245186584	5.59170512463863	5.02500931038175	5.49244193776581	5.17909507740417	5.1661058787371	-0.21230291987804	0.577814784781672	0.87219514592351
Merged-chr2-32881880-4	chr2	32881318	32882318	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5684.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	4.60238920191209	4.47203193521067	4.60577080287479	4.01465911765455	3.98499079206545	3.89478488464462	-1.63189958618214	0.000631675649610307	0.0126286562837036
Merged-chr3-95217290-4	chr3	95216767	95217767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-190.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	7.2947585335534	7.47625575814537	7.37265663314571	7.34791501689611	7.49825661485742	7.34179367825126	0.0265715008182153	0.908404154187427	0.979259582109985
Merged-chr17-55751327-4	chr17	55750813	55751813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	1329.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	7.29508168603767	6.99112468480152	7.36703696670673	7.10777343082926	7.28403426032869	7.09921401708786	-0.0766155142455737	0.761664506318144	0.941258867861232
Merged-chr18-20744404-2	chr18	20743904	20744904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	(CACAC)n|Simple_repeat|Simple_repeat	2000.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.46769660963064	5.65662156957279	5.29311893606123	5.55891712985976	5.44248926766995	5.11003044033506	-0.184556903301829	0.608818983734333	0.885036600893908
Merged-chr6-81956581-1	chr6	81956081	81957081	+	632.0	f1_balb.idr	intron (NM_177884, intron 15 of 16)	B3|SINE|B2	9368.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	3.45756620118415	3.1793945863819	3.22992589871469	2.87772566752829	2.8152207756721	3.00606772105472	-1.90790829885754	0.00697716847527287	0.0779270113410073
Merged-chr10-21947121-4	chr10	21946625	21947625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-31547.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.84549119218312	7.69944076091072	7.39047324237252	7.41576943981984	7.65328705818372	7.59220993229305	-0.156424677027246	0.525416884025001	0.848999112257332
Merged-chr14-54391124-3	chr14	54390616	54391616	+	924.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1_Mur3|LINE|L1	18356.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	5.50737415771211	5.48803785591629	5.32115572051212	4.21067942967137	3.7523836029451	4.26655464189413	-3.54121324243513	6.6494915653343e-13	1.31423015241885e-10
Merged-chr12-91769025-2	chr12	91768525	91769525	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	17411.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.08215870194402	3.81719395882033	4.06157018147062	4.21694948408053	4.02291512194374	4.17641578783372	0.431766065610993	0.38233909244016	0.763925350072298
Merged-chr11-76593855-4	chr11	76593374	76594374	+	894.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16135.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.80080010937352	5.0892350274703	5.2518113220234	5.38586680965865	5.48961062758481	5.69967855474167	0.950722033292327	0.00993438645572275	0.100002471353469
Merged-chr14-64876786-4	chr14	64876274	64877274	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	73083.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.99109838783559	4.77823709249155	4.96774451114816	4.75257213282387	4.76106524499108	5.1620588759994	-0.0427761624315531	0.915272201857187	0.980959026698783
Merged-chr15-68258957-4	chr15	68258445	68259445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-89.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.17816349635434	8.50702950229996	8.09715909408572	8.01941344657992	8.22021224262603	7.95141232106491	-0.288193738743244	0.222100884168586	0.617038101491437
Merged-chr18-23898407-3	chr18	23897908	23898908	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56280.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	5.14599231326824	5.38576115754816	5.21156452991898	5.27923817529151	5.26506206590197	5.33887913510146	0.0727554544855409	0.834711366282384	0.96138272464184
Merged-chr15-100228963-3	chr15	100228452	100229452	+	836.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	intron (NM_007497, intron 1 of 6)	1093.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	6.25555377906476	6.76479221789746	6.14762715290995	6.36068654525082	6.6410786020445	6.29565859674436	0.030407313385522	0.92425405762654	0.982923745196305
Merged-chr7-130547858-3	chr7	130547337	130548337	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-456.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	4.22721197304373	3.93600040063277	3.77115469627115	3.93581806779445	3.8858021919301	4.40021626100147	0.256176011790216	0.639988229601223	0.898255496259518
Merged-chr5-99216166-5	chr5	99215711	99216711	+	880.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36716.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.45749239922216	5.59143899158566	5.23899574633347	5.43719974769025	5.57226871652152	5.76477415381271	0.272699110564134	0.427608662150008	0.794459314111399
Merged-chr9-5299877-2	chr9	5299377	5300377	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1360.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	7.06463509799287	7.02180019308549	6.44846205193398	7.19125041892865	7.29153546797262	6.84751035324668	0.371482803177277	0.213366289087829	0.606262197186862
Merged-chr10-80419717-2	chr10	80419217	80420217	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 6 of 18)	intron (NM_001164153, intron 6 of 18)	-12896.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	3.15432486017119	3.09776161482469	3.08487251305956	2.94861178610486	3.00758830522423	3.03855891297592	-0.528997362276836	0.421960564882533	0.790865968752017
Merged-chr18-36740425-2	chr18	36739925	36740925	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4162.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	2.99260319050286	3.43143916203157	3.38120374095678	2.97456214407996	3.24102009489584	3.28924376212353	-0.439256284659035	0.52119655544881	0.84693755135567
Merged-chr8-78556902-2	chr8	78556402	78557402	+	822.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 4 of 10)	intron (NM_001009981, intron 4 of 10)	47574.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	3.83646655491169	3.69418882476398	3.52232083712435	3.84070042463003	3.37182763885411	3.85946598365155	0.0331643748509659	0.955651586600779	0.989763164889919
Merged-chr2-170511322-5	chr2	170510881	170511881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040367, exon 1 of 3)	non-coding (NR_040367, exon 1 of 3)	151.0	NM_001199902	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	7.62428865581888	7.7421903626951	7.4951921689345	7.66805473737937	7.65669583957233	7.22056929781843	-0.127757419543017	0.609843278659527	0.885319181581414
Merged-chr11-115668106-2	chr11	115667606	115668606	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	31428.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.19903986668626	4.19400475315508	4.45329824629998	4.18077034879482	3.85275192908464	3.98574345829379	-0.76881765665825	0.119897560265452	0.462900714298801
Merged-chr6-17622132-4	chr6	17621642	17622642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14868.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.75830833779811	6.06383249690514	6.23888423245921	6.09164636311748	6.10160098673737	6.31750412344746	0.242374821004981	0.432993197737933	0.79758551656855
Merged-chr9-106247302-1	chr9	106246802	106247802	+	921.0	f1_balb.idr	5' UTR (NM_001291835, exon 1 of 11)	5' UTR (NM_001291835, exon 1 of 11)	428.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	6.15412492692906	5.87773594173078	5.70340076621022	6.22586649824133	5.8173055528187	5.82075497724768	0.0640264703308838	0.847089264688766	0.96415075979756
Merged-chr5-8347601-3	chr5	8347100	8348100	+	965.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	20560.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	5.21339885751816	5.40454188045194	5.41768780843398	4.71893940438269	4.93093933134656	4.97084784150567	-0.983316906311197	0.00829510121504494	0.0882971449279084
Merged-chr18-65583918-4	chr18	65583392	65584392	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	691.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.47869119933189	4.52900359319509	4.50887693117877	4.10124840148123	3.83796867721325	4.2339434643687	-1.24294416505777	0.00904841866292973	0.0938662037283452
Merged-chr4-95686998-2	chr4	95686498	95687498	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	107577.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.04786468696831	3.18553812721739	2.94320382230455	2.98864019738917	3.33247014544656	3.14001747195788	0.429441274625523	0.529808561625466	0.851048470960073
Merged-chr5-123079161-2	chr5	123078661	123079661	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	2886.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	5.03171226595159	5.05178048842836	5.01377706140665	4.85066528461998	5.00440501013484	4.93500867179506	-0.2132316094786	0.565826022357774	0.86688237163883
Merged-chr15-96709220-4	chr15	96708728	96709728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9500.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.72899110453406	6.82118328898379	6.25974127961258	6.59957301247076	6.62190497122133	6.38331682105048	-0.14881621737941	0.6126341884065	0.886885261037085
Merged-chr5-65882564-2	chr5	65882064	65883064	+	802.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	18995.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.29116499002655	6.34490017703761	6.14499162002166	6.31765291533406	6.32306409085078	6.38789669876569	0.117044537103821	0.668883344233107	0.909385924601941
Merged-chr6-145193617-4	chr6	145193124	145194124	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 7 of 15)	intron (NM_177222, intron 7 of 15)	17346.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	3.59009964018237	3.95674371738097	3.970646028628	3.62843573932031	3.50808123076506	3.80133057890628	-0.677378497417142	0.229634351713459	0.625263102109803
Merged-chr6-129097608-4	chr6	129097115	129098115	+	794.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	3288.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	5.30109806730885	5.82843562038968	5.51313690949074	5.36354178299148	5.60056234653108	5.03963198138038	-0.384211321614283	0.32137769427654	0.714837665357421
Merged-chr5-86804692-4	chr5	86804184	86805184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177680, intron 1 of 16)	CpG	418.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	8.85183333855022	9.23795403255473	8.79218253981398	8.9406556816161	8.85549564873915	8.76932527316574	-0.167919746259788	0.455377749421724	0.810916340573998
Merged-chr2-152332575-4	chr2	152332060	152333060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	79.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	7.89839451013695	8.26504803854299	8.05728487184327	8.05780187473617	8.18114488945278	7.86738902624678	-0.0521490827897309	0.823712601499987	0.958451755471188
Merged-chr3-27650298-4	chr3	27649813	27650813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	60139.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	5.53809805808017	5.57406173844336	5.29877033605145	5.7826600843505	5.31343632857786	5.45863667077303	0.090127269769372	0.799289852860365	0.952248176414355
Merged-chr15-25302514-2	chr15	25302014	25303014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111250.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.03913325944526	8.34662302773568	7.56153056325617	8.01106105040147	8.32980107392234	7.79263524650096	0.0550422739940644	0.849970605631221	0.964762455509634
Merged-chr4-8823339-3	chr4	8822840	8823840	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	72016.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.42246555412403	3.94299678751375	3.94380069979005	3.38988643925976	3.42814236920794	3.39673409743054	-1.36068664393071	0.0268375015537647	0.195063101842734
Merged-chr8-80739671-4	chr8	80739166	80740166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	-207.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	8.36800802420855	8.64863575568056	8.34737662130781	8.43952264299274	8.57954579052487	8.40288756218301	0.0182023111518487	0.933201260674322	0.985356091252617
Merged-chr10-52418090-4	chr10	52417586	52418586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030250, exon 1 of 5)	exon (NM_030250, exon 1 of 5)	539.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	8.57806483505089	8.86483894288046	8.51534050682778	8.47550243597057	8.36812942086957	8.467219795313	-0.318291976216216	0.14086109458738	0.501450363202116
Merged-chr17-57358584-4	chr17	57358095	57359095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-91.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.74599790037793	6.52519296881187	6.62339217344181	6.85813694832139	7.0192558351114	6.77908170107211	0.410309853284608	0.112726254001764	0.448425976142792
Merged-chr11-101673370-4	chr11	101672868	101673868	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7827.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	4.83978345992206	4.67628190669757	4.93383674309598	4.56959924379252	4.55781998145996	4.49680824695922	-0.6397827794413	0.119553620569678	0.462186289791579
Merged-chr16-22399478-3	chr16	22398969	22399969	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 8 of 12)	intron (NM_001358428, intron 8 of 12)	38899.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	7.39430537143702	7.40089121290342	7.62643979741926	7.50932619026327	7.78229973782182	7.83518578192345	0.353485314832728	0.136823919891315	0.494176782981012
Merged-chr9-95575109-4	chr9	95574613	95575613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15296.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	8.05913872838942	7.89322560283294	7.92669723250081	8.17722593835619	8.24050116803954	7.91127322325711	0.227882946072425	0.307681449388631	0.703803552912064
Merged-chr14-73385333-4	chr14	73384845	73385845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008410)	promoter-TSS (NM_008410)	-56.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	8.30312307847136	8.4016565590139	8.31178733503215	8.30804227446065	8.50069727122677	8.48158037114046	0.129469715656501	0.528840516322463	0.850585575598857
Merged-chr9-92303572-3	chr9	92303069	92304069	+	852.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5808.0	NM_001033184	78459.0	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding	2.13941702416717	2.29611001940511	2.34602109380152	2.02712908281905	2.21871119061184	2.09192396107827	-1.02824301914022	0.268601757323787	1
Merged-chr8-117519784-1	chr8	117519284	117520284	+	1000.0	f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	21509.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	4.97519203596538	4.89465383696575	4.36587872153907	4.46778124822306	4.5916879841867	4.65931216468512	-0.495636281955527	0.267701204793855	0.664956154392379
Merged-chr17-87303048-2	chr17	87302548	87303548	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	B3|SINE|B2	20162.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.79650605805218	7.08952587268289	7.16322949177246	6.76965360401141	7.14022868795592	6.92414760887376	-0.0943111401584753	0.725801227378821	0.929724409589692
Merged-chr9-21798052-2	chr9	21797552	21798552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145611, intron 1 of 11)	intron (NM_145611, intron 1 of 11)	494.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	4.38578013464841	4.59965182178397	4.79967344837741	4.61592138631196	4.54277719272872	4.47239641367496	-0.120649169515647	0.780190797137781	0.945966807104547
Merged-chr7-83892019-4	chr7	83891522	83892522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023403)	promoter-TSS (NM_023403)	22.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	6.16201033246529	6.18550940396048	6.42159049049543	6.31967165066113	6.34233946295776	6.40880145426547	0.170480231601606	0.538320711868746	0.855080856348593
Merged-chr5-43842880-4	chr5	43842377	43843377	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009763, exon 9 of 9)	3' UTR (NM_009763, exon 9 of 9)	23984.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	5.17347581796788	5.3416134462692	5.22531085340595	5.42652931012217	5.16832628158812	5.44178735403268	0.183892273751128	0.602024143690703	0.882187830872038
Merged-chr13-60660097-3	chr13	60659598	60660598	+	851.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	57887.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.7119456330431	6.15623403121229	6.23359914728375	5.34876762182155	4.8164176276522	5.30957229857576	-1.65895175320066	1.18449925070923e-05	0.000462722129826357
Merged-chr11-54812947-4	chr11	54812453	54813453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	6.17630177346587	6.14884898812572	5.3383961458716	5.3410172812602	5.37824123301681	5.06658600238633	-1.25277697599004	0.00154232800509247	0.0252328015430072
Merged-chr18-32693947-4	chr18	32693448	32694448	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-121435.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	5.71741937221472	5.85216204602191	5.89332283625743	5.68766148070324	6.13514560631581	5.80657616925581	0.147374526550983	0.647885336370011	0.901567740926095
Merged-chr3-81037563-4	chr3	81036984	81037984	+	966.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019971, exon 1 of 6)	exon (NM_019971, exon 1 of 6)	1068.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	7.72316318117256	7.77659924075213	7.48277058816382	7.55386902304519	7.79621420671519	7.0330774894159	-0.230359257699674	0.417122106775207	0.787792972496192
Merged-chr5-113634412-3	chr5	113633912	113634912	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9191.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	8.1798563070145	8.25495048360512	8.05519038806306	8.29720189555037	8.54593264671792	8.05939917546351	0.217541958101724	0.352770660645241	0.740311251726841
Merged-chr19-12469001-4	chr19	12468495	12469495	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	8216.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.05704938500789	3.9018396370261	4.77961903122487	3.60440751059281	3.57409360122518	4.43946744484323	-0.939893634616528	0.36826424182611	0.753265422302852
Merged-chr15-73600170-2	chr15	73599670	73600670	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-3644.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	2.79956063222196	2.87807917781305	3.20504988221763	2.8459089499732	2.67711481137689	2.82129235893934	-0.923892569526826	0.209700807758322	0.601474829781263
Merged-chr16-3744038-4	chr16	3743531	3744531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-68.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	8.56192056732891	8.97599245209761	8.64985845206292	8.76056708237532	9.01761454935856	8.63485048262656	0.10153047736104	0.666400021721508	0.908149841255908
Merged-chr8-35540696-2	chr8	35540186	35541186	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45153.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	2.86649792225807	2.83443630575893	2.94044039431999	3.64138711814854	3.75035693921333	3.76766328047192	4.37072312713587	8.39845946938731e-07	4.65568964376269e-05
Merged-chr13-37680017-2	chr13	37679517	37680517	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146021.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.95074305638408	5.83421204074422	5.55603307142376	6.06409045245204	5.75113247909174	6.07652644703944	0.287887530390665	0.375648783060448	0.758867268952724
Merged-chr4-3835018-1	chr4	3834518	3835518	+	634.0	f0_balb.idr	intron (NM_026147, intron 2 of 3)	intron (NM_026147, intron 2 of 3)	637.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	6.61382487262045	6.83806669732739	7.07937458416687	7.00312137589534	7.12563069860232	7.20851951080788	0.404255310652761	0.124903623127826	0.472868997683394
Merged-chr15-102458530-3	chr15	102458054	102459054	+	806.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-616.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	5.65058450217266	6.08756613689681	6.13717409894291	5.83720279715658	5.97090938074402	6.05005642391142	-0.0311413957123356	0.922810388798835	0.982621045978137
Merged-chr7-45866208-4	chr7	45865721	45866721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008172, exon 1 of 12)	exon (NM_008172, exon 1 of 12)	460.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	3.94816043938423	3.64761178411577	3.9113528457746	3.92281883553741	3.34412651964402	4.3244599444626	0.255669488594214	0.687954787501367	0.917193226920892
Merged-chr10-80694807-4	chr10	80694319	80695319	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	7001.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	7.40140407586624	7.20792389949382	7.23106865474086	7.39259924110684	7.82187944307307	7.36970074371767	0.397768029238431	0.121963720966795	0.4671659074763
Merged-chr10-81601045-4	chr10	81600556	81601556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-156.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	3.81114285749745	3.86492720029051	4.07420481124716	3.91993304326434	3.8382580307386	4.18516578263138	0.199460944567398	0.699494527304099	0.920619136555148
Merged-chr15-27928561-2	chr15	27928061	27929061	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	97287.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	2.50267098006317	2.56291798538762	2.68900077059831	2.56456170140863	2.59237517575322	2.57618462825091	-0.0283425008235326	0.970453277894412	1
Merged-chr7-45461007-4	chr7	45460509	45461509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007527)	TTS (NM_007527)	-1123.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	8.44019981504539	8.63872985824561	8.28025171441964	8.31346751401952	8.52786860615794	8.44828647201839	-0.0449814099150756	0.838100344342311	0.962389299937002
Merged-chr3-104937918-4	chr3	104937442	104938442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	23767.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	5.08068809180233	4.74902516038112	4.56734234552375	4.72422340236075	4.86444762844555	4.5460693452829	-0.225146933074245	0.602203900453143	0.88225227970428
Merged-chr7-75639671-4	chr7	75639104	75640104	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	184070.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.72889160291045	5.72019761539611	5.02194702841181	4.31811066677632	4.14029412451775	4.28064733172595	-3.03054604343453	4.76218867785263e-11	6.8201754820441e-09
Merged-chr14-31429074-2	chr14	31428574	31429574	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7026.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.71129534262397	6.18473050624418	6.04641928179048	5.87305326884433	5.68006066591005	5.8528780732912	-0.347344176481315	0.281807803835056	0.679908771156903
Merged-chr7-129501573-4	chr7	129501077	129502077	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-90286.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	2.82949450703769	3.08107318434438	3.09586575802083	2.99140370441674	2.93960961910959	3.05229531224775	-0.0612927591541136	0.928451874726124	0.983802612059568
Merged-chr17-8195823-4	chr17	8195302	8196302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001197046, exon 13 of 13)	3' UTR (NM_001197046, exon 13 of 13)	30284.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	5.77087476516371	5.87498332103216	5.60792393794137	5.78854154767875	5.652529530814	5.72534505581881	-0.080009500010856	0.79842924741163	0.951930937621884
Merged-chr8-33607766-5	chr8	33607267	33608267	+	796.159973	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	B1F1|SINE|Alu	8146.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	4.91384661846306	4.97972217358757	5.345321126188	6.28795842559146	6.49512182259755	5.96374542875254	2.22854593506796	1.55986044894345e-10	2.00297636166183e-08
Merged-chr9-62828902-4	chr9	62828389	62829389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9898.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	5.89941849045492	5.69764251142666	5.5642265325334	5.7102551805461	5.80258552707663	5.56857008446513	-0.0551163753914807	0.864636864917623	0.968297921776544
Merged-chr3-105796887-3	chr3	105796393	105797393	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	4488.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	5.36792781455514	5.67924797713537	5.51964063722343	5.73497506926445	5.83132032722255	5.58277759393415	0.365797655571579	0.266680047431981	0.664172509867066
Merged-chr10-14115733-1	chr10	14115233	14116233	+	884.0	f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	149354.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.91273172148999	3.70299028162727	3.89795918929711	3.72534487634908	3.66359387656217	3.71492543090166	-0.456050142341492	0.391006032200754	0.770112153342334
Merged-chr7-25706994-4	chr7	25706498	25707498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12055.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.43773955849406	7.65236483547943	7.6215116248381	7.68459664674762	7.84635540743762	7.38141093522928	0.127994303209397	0.603402791097525	0.882544198306255
Merged-chr8-120741219-4	chr8	120740703	120741703	+	948.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2564.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.42742399374263	5.84497024882165	6.03056975254336	5.8748700088487	5.42222841947037	5.74589933657833	-0.17301183457529	0.631168259203567	0.895063064307722
Merged-chr3-144628201-3	chr3	144627699	144628699	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	57772.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	4.12471984094366	4.15809365276636	3.94804473539048	3.42508650992763	3.54219425387691	3.8176499364334	-1.60853467268006	0.00392724928902373	0.0512352710631995
Merged-chr13-43164360-1	chr13	43163860	43164860	+	847.0	f0_balb.idr	intron (NM_001252639, intron 4 of 7)	intron (NM_001252639, intron 4 of 7)	7141.0	NM_001252639	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	3.38536823070975	3.59638147704176	3.4001683483335	2.70499005494216	2.59136057490884	2.94123651808562	-4.8486441835764	1.16717573509889e-05	0.000457027569722863
Merged-chr3-87227055-4	chr3	87226563	87227563	+	644.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	36461.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.80462087324853	2.89282394609692	3.01171666314531	3.04861181249058	3.00949635632794	3.02514201810496	0.599691958007531	0.377251154710196	0.759641818876754
Merged-chr5-95914284-4	chr5	95913771	95914771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42668.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	5.29469716166317	5.28535006586514	5.36425467397215	4.72104929182122	4.63578457465582	5.05388270241487	-1.10110073623607	0.00398536774500902	0.0518080619577907
Merged-chr7-145279030-2	chr7	145278530	145279530	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 3 of 22)	intron (NR_132643, intron 3 of 22)	4981.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.53778213659383	2.46602538248356	2.75312585451718	2.61295216183879	2.42474590569526	2.70671986922551	-0.0245683322493411	0.975248236477008	1
Merged-chr15-41447378-4	chr15	41446867	41447867	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358978)	promoter-TSS (NM_001358978)	-115.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.25168284017411	4.26508709355063	3.97080634734545	3.53689556207906	3.28603243557789	3.49026692277336	-2.63044701722033	1.0589760121212e-05	0.000421402563446107
Merged-chr6-33401402-4	chr6	33400897	33401897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	Lx8b|LINE|L1	152269.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.2366388963376	4.16886245126635	3.90139174571057	4.085481609033	4.14594346230831	3.74824987036624	-0.294835092695125	0.574890943729798	0.870949097302346
Merged-chr15-38291616-2	chr15	38291116	38292116	+	624.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	8284.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.11743956232787	4.41070921558002	4.51799609979048	4.53888467855347	4.26672653262227	4.28478672525023	0.0415807463020419	0.929087750658069	0.983987942057929
Merged-chr4-149309464-4	chr4	149308965	149309965	+	851.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-1732.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	3.6989261463041	3.47290590765709	3.72146859410956	3.56946815658225	3.47601646082827	4.0219385982458	0.232180915048747	0.694076874164048	0.919161391415872
Merged-chr3-97205759-2	chr3	97205259	97206259	+	952.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 10 of 10)	exon (NM_029933, exon 10 of 10)	21605.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.88816456456806	3.95839797084473	3.98629661237545	4.13257239080473	4.03452125160031	4.14933217117584	0.473294214249669	0.329920852491833	0.72157339201449
Merged-chr6-124662184-2	chr6	124661684	124662684	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-920.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	7.61211075524847	7.53556510057109	7.41582409328793	7.67310031588951	7.8249235905452	7.0319285423972	0.0580780674640801	0.83878011418429	0.962592773676812
Merged-chr5-64338494-1	chr5	64337994	64338994	+	552.0	f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	108137.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.51203896183573	4.4452319229368	5.02383694625999	4.7301790662505	4.7214232970086	4.88892903507631	0.246685358636457	0.573217704093397	0.869962295500663
Merged-chr12-79534353-3	chr12	79533853	79534853	+	623.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	237002.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.50491720340727	3.88578774895112	4.17871409092612	3.9964260069571	3.83392901817013	4.07154943399039	0.269382470649984	0.634002605649597	0.896247399650521
Merged-chr16-17928805-4	chr16	17928302	17929302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153150)	promoter-TSS (NM_153150)	-583.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	6.379888461473	6.67465732185482	6.41952895401218	6.44963842273716	6.31022183533238	6.34502737181916	-0.219096364972568	0.427610985022992	0.794459314111399
Merged-chr12-75449094-4	chr12	75448617	75449617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32336.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	3.53343503507643	3.92176256510123	3.69696979407616	3.674594876598	3.75222740054548	3.6048991297423	-0.161591984828827	0.773649942940111	0.944173194563192
Merged-chr1-131112137-2	chr1	131111637	131112637	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14294.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.99708011751653	3.61077221308813	3.62130321492903	3.87633500189526	3.64471399281122	3.69330388561227	-0.066814866390236	0.905560964419636	0.978423502708588
Merged-chr3-133094518-4	chr3	133093997	133094997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2458.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	4.00636349807014	4.16891448572129	3.85394602058171	3.70670744656965	3.75424846431921	3.97380845959941	-0.660949850815907	0.206932962443764	0.597718538515663
Merged-chr3-69657806-4	chr3	69657300	69658300	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58840.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	5.78312267908435	5.62804274253239	5.75330737009604	5.94781037734792	6.09939085802847	6.33263413839899	0.71679543059495	0.0200008757935122	0.161403634276652
Merged-chr1-36275866-2	chr1	36275366	36276366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2441.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	2.25665683412607	2.26086729679375	2.59497374390504	2.35475025548414	2.15688803276497	2.35903691001	-0.553347176723223	0.525751134045811	1
Merged-chr12-8518660-2	chr12	8518132	8519132	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18623.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	5.87517344036313	5.85507075372582	5.83858292884049	5.78400833095731	6.04922879926779	5.6019289879544	-0.0286512531138286	0.928390334768416	0.983802612059568
Merged-chr2-90642472-2	chr2	90641972	90642972	+	623.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34743.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	4.35353987454471	4.28524999870975	4.33508034087828	4.16261605231521	4.27856996712105	4.1749653122586	-0.306788507545091	0.499600259537203	0.834602951184959
Merged-chr13-111979577-3	chr13	111979085	111980085	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111649.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.19525960923671	6.46837388215406	6.22766952891554	5.27047442649309	5.01601198187615	4.93544729144187	-2.26788759740794	4.20224406568088e-11	6.03903841480439e-09
Merged-chr10-98744920-2	chr10	98744420	98745420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-169722.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.74109672446363	5.80787525927031	5.22517864953971	5.46915190684112	5.72679408505946	5.74537252366304	0.0398274250991982	0.911273944662957	0.98004232415071
Merged-chr6-122854787-4	chr6	122854284	122855284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	1373.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	8.81957709061623	8.92122197096397	8.22971622998846	8.60639322953607	8.90517971539742	8.23681245532733	-0.109188709993928	0.702768626340106	0.922000148631826
Merged-chr3-107101387-1	chr3	107100887	107101887	+	621.0	f1_c57bl6.idr	promoter-TSS (NM_008417)	promoter-TSS (NM_008417)	-180.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.49257665681757	6.86187119467421	6.5093618825572	7.03063780353012	6.90044152479158	6.92213720899101	0.483469823947338	0.0716268983265752	0.351079815973001
Merged-chr10-87842304-4	chr10	87841814	87842814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15951.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.59061607046417	7.45217238628959	7.24982331149244	7.62818585610962	7.55244299866229	7.27089469453552	0.0795113178739745	0.748200857566002	0.936880860325556
Merged-chr14-32184286-4	chr14	32183819	32184819	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 6 of 6)	intron (NM_016897, intron 6 of 6)	17572.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	6.49479437246391	6.46832356607468	6.94838792148959	6.62297235566296	6.83289134223355	6.59101718994186	0.075947950893097	0.791409376050723	0.949737938863565
Merged-chr7-100433511-2	chr7	100433011	100434011	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-39480.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.64819404123457	6.12203758980739	6.59714535276969	6.32589166408441	6.58393144661943	6.41192877065175	-0.0376986313133958	0.900780230682508	0.976982213230665
Merged-chr14-26814084-4	chr14	26813566	26814566	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80538.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	3.56057958604986	3.89076152138092	3.72686553738313	4.2360493512074	3.89376727138781	4.00451480973204	0.975490810203777	0.0714766784725389	0.350694702655995
Merged-chr6-125219159-4	chr6	125218660	125219660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080557, intron 3 of 3)	intron (NM_001080557, intron 3 of 3)	3579.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	4.34772373025229	4.35931634286436	4.3758755936537	4.27395599589514	4.49731757302343	4.48509525084946	0.165178448665919	0.707447034380351	0.923406217611176
Merged-chr19-41304051-2	chr19	41303563	41304563	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	L2b|LINE|L2	-40059.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.33377531240923	2.30153602130277	2.62276240474102	2.27790470781923	2.32730555463817	2.69559921992906	0.116177517679323	0.892805525677975	1
Merged-chr1-147010850-4	chr1	147010344	147011344	+	927.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	513157.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.47303995621307	4.09521460496899	4.34536924844557	4.20495664027131	4.37710793501305	4.18545002032388	-0.128400541563323	0.786367416368592	0.948483724840008
Merged-chr3-88592154-4	chr3	88591659	88592659	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	12551.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	4.9520048424262	5.3534341082386	5.34241306755017	5.11567221182424	4.86476287285504	4.83332885178513	-0.598063487352324	0.12671818794593	0.475668700234857
Merged-chr6-91515923-4	chr6	91515431	91516431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026309)	promoter-TSS (NM_026309)	-43.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	6.43669424267864	6.76897913818968	6.3645006374678	6.54425470301545	6.49307673291924	6.26020718282602	-0.160222251462575	0.578080770224846	0.872326304000091
Merged-chr11-121744048-10	chr11	121743566	121744566	+	961.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41639.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	8.24194091296519	8.32168933631932	8.20566414714687	8.08985586571913	8.45476933764479	8.10520373679017	-0.0336195984110428	0.881639559061339	0.972846584805466
Merged-chr5-135667007-4	chr5	135666497	135667497	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-22148.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	3.35568981123575	3.23799719722321	3.63167452647995	2.84884513722817	3.11456910878374	3.50638019491285	-0.931617655729899	0.205444718252206	0.596047563330878
Merged-chr12-102444951-2	chr12	102444428	102445428	+	761.633301	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-5115.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.42710256615808	7.57146954732176	7.242305447896	7.7340786266728	8.03581186288617	7.66270566207227	0.580684213801495	0.018617354318882	0.154201952833519
Merged-chr10-86886611-4	chr10	86886136	86887136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	107631.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	8.08044083263117	8.02553090446326	7.7603498841278	7.96264175695904	8.47113761140879	7.89394907186012	0.251534364098188	0.337074340241629	0.726998843028656
Merged-chr17-50751000-2	chr17	50750500	50751500	+	610.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 19 of 21)	intron (NM_028162, intron 19 of 21)	52319.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	2.65655415565324	2.81948532547192	3.0213292918097	2.86108098976762	2.54660685120607	3.09303528332582	0.0577618934357802	0.941222422981731	0.986922504838559
Merged-chr12-33110964-4	chr12	33110443	33111443	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015602)	TTS (NR_015602)	-18068.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.45164428338458	4.73427793479388	4.865686464817	4.24909235589527	4.21877869387295	4.2559742940804	-1.1434194773811	0.0112394976629182	0.109215943190014
Merged-chr11-69413653-2	chr11	69413228	69414228	+	920.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-53.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.35170039148006	4.08259259943241	4.10206053855445	4.37237446758871	4.48790018014347	4.17229517368019	0.456988730175569	0.335155132842641	0.725351478491702
Merged-chr17-35837686-4	chr17	35837179	35838179	+	910.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	622.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	6.09697082299961	6.39256974175884	6.7682061479182	6.64930147907729	7.06868645921626	6.91120645074406	0.714833618977947	0.0205676535996656	0.164367395382345
Merged-chr5-149635960-2	chr5	149635460	149636460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347534, intron 1 of 16)	CpG	355.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	5.37973417945605	5.75330645111213	5.95764353089673	5.3624433414145	5.5737774219793	5.66481505866988	-0.321076025650474	0.36433513236832	0.749738197211813
Merged-chr1-34459712-4	chr1	34459217	34460217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011206)	promoter-TSS (NM_011206)	-29.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	4.96356730831462	5.19505769636592	4.66250709727612	4.81111909495485	4.93301471156899	4.89229962136175	-0.198773100018921	0.623901931898179	0.891718254783119
Merged-chr2-154613440-4	chr2	154612947	154613947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	79.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	7.99947993427902	8.0211704137533	7.91662825503872	7.75168598572073	7.77435811493015	7.67693168917097	-0.349870048587213	0.0988526162166718	0.419333642002316
Merged-chr8-85085435-2	chr8	85084935	85085935	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010764, exon 4 of 24)	exon (NM_010764, exon 4 of 24)	2166.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	4.9413908603208	5.02301934418445	5.36139112378992	5.08371359943691	4.95809570525907	4.9797156185422	-0.214961600836139	0.57348442917278	0.870156136738611
Merged-chr18-34651375-1	chr18	34650875	34651875	+	961.0	f1_balb.idr	intron (NM_178347, intron 2 of 15)	CpG	361.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	5.4282722122335	5.54002386509356	5.22382369803789	5.17632807508548	5.35299864442032	5.78916453960839	0.0836000548752547	0.82292113339487	0.958199570473596
Merged-chr15-74938378-1	chr15	74937878	74938878	+	546.0	f1_balb.idr	Intergenic	BGLII_Mur|LTR|ERVK	-16673.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.26073665275954	5.47398484773002	5.38603035700593	5.01525020928492	4.73101751358879	5.03241311486429	-0.94882534513984	0.0104964548248066	0.103888308916678
Merged-chr3-131564677-4	chr3	131564196	131565196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-72.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	6.39851530255674	6.52718567792854	6.52797888642511	6.50210722099822	6.40560359955237	6.517747575542	-0.0193129332705631	0.941575602417432	0.987024728112131
Merged-chr16-20401796-4	chr16	20401283	20402283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 6 of 6)	intron (NM_176839, intron 6 of 6)	24611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	4.20424662576757	4.42602656532668	4.727279260509	4.49661039426466	4.50846267009639	4.68214406952424	0.252538899229325	0.576179930179368	0.871585067865562
Merged-chr3-105910654-4	chr3	105910164	105911164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	6243.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	4.99186077072953	4.98939615034777	4.8193816184061	4.91661719895859	4.89908378868875	5.16589928936958	0.103236756482392	0.787015260201418	0.948693859994902
Merged-chr8-84744021-2	chr8	84743521	84744521	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	30348.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.67355023965135	3.03450552172434	3.56023327953313	3.49390765172167	3.22895287629943	3.68097362269321	0.0913333226992662	0.893657918460743	0.975265071347118
Merged-chr11-68509332-3	chr11	68508815	68509815	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	PB1D10|SINE|Alu	6296.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	3.19167281316018	3.34275928744083	3.38126801286126	3.12213449307362	3.29127157935482	3.7950842335294	0.462610216193917	0.484537441498453	0.826955188719244
Merged-chr12-32764950-4	chr12	32764455	32765455	+	938.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55380.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.79660706542506	4.76393894772076	4.91443905550451	4.99380401544777	4.6131098065342	4.79496073718986	-0.0369315593158101	0.927061559511498	0.983578869536024
Merged-chr7-139219265-4	chr7	139218768	139219768	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-5961.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	5.0718573014195	5.167724954462	4.8472362118424	4.93042277514084	4.98586499947754	4.66403659277627	-0.359381233546332	0.363911890882497	0.749357676652347
Merged-chr4-53144393-2	chr4	53143893	53144893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	15502.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.18193606412257	3.34055707901336	3.40799157940747	3.28780509098899	3.29142704531133	3.82110945880789	0.648717413429442	0.31134984549633	0.706465219571547
Merged-chr9-57561118-7	chr9	57560610	57561610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022813, exon 1 of 9)	exon (NM_022813, exon 1 of 9)	166.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	8.28977533549283	8.36276086168403	7.94488621167202	8.1529270913036	8.37668023092403	7.87743353834426	-0.081482939850807	0.745618602663081	0.936248342896653
Merged-chr15-58604779-4	chr15	58604273	58605273	+	932.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189305.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	5.81942365692262	5.95148853766891	6.02391478889663	6.00199636622143	6.0372840513227	6.0624599070882	0.181067644604136	0.535197671720828	0.85341621121369
Merged-chr11-105990435-4	chr11	105989951	105990951	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_207624)	TTS (NM_207624)	-4224.0	NM_001101453	217246.0	Mm.296699	NM_001101453	ENSMUSG00000101605	Ace3	EG217246	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3	protein-coding	4.60486540790017	4.52932809573023	4.61214865686199	4.68819672392103	4.56777143306046	4.37493463287102	-0.0592366169864199	0.888887082181288	0.974207858658472
Merged-chr19-41369968-4	chr19	41369476	41370476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15094.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.53191073317166	6.51097211079284	6.31334462908562	6.45014619346693	6.33666801475189	6.27139318216997	-0.172751030748089	0.525649347462626	0.849071708183764
Merged-chr6-17612447-3	chr6	17611945	17612945	+	962.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-24565.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.05965118307326	6.40477396065979	6.29712613018409	6.15527181402125	6.52712428000448	6.4683878455299	0.221059516600078	0.456333738016179	0.81154607319933
Merged-chr12-84773997-3	chr12	84773457	84774457	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	687.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	5.4083733964123	5.38263704335671	5.46675704096869	5.5254445316612	5.45065295048415	5.52938904876838	0.159521305615958	0.625054310213979	0.892373820694132
Merged-chr5-135772714-4	chr5	135772205	135773205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5596.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	4.91151280574929	4.9995090989889	5.02886938879615	5.21437629833718	5.42397729206672	4.82521501211512	0.450926848603688	0.251654518402073	0.649131042445275
Merged-chr3-69157757-4	chr3	69157256	69158256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126533)	TTS (NR_126533)	26523.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	6.48984150908866	6.40515591353792	6.55592931974146	6.04778830185433	6.04925632915804	5.85140442900195	-0.814548792121858	0.00398922550595857	0.051821267768272
Merged-chr6-28487046-4	chr6	28486548	28487548	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6700.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	6.11870039664284	6.02930818609125	6.27918511243281	6.59456967484551	6.62207855576351	6.57565776122586	0.75773107993317	0.00509338465341062	0.0619371049224173
Merged-chr2-155381806-4	chr2	155381282	155382282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178111)	promoter-TSS (NM_178111)	-74.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	9.077361966429	9.08521477795568	8.56499300198326	8.58320669236064	9.04057613985798	8.59328350182327	-0.23791005697479	0.357496342469167	0.744062225368359
Merged-chr7-139950554-4	chr7	139950085	139951085	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6729.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	4.99583800860671	4.84419704463828	5.10070448118622	5.36259251028565	5.19952090551025	5.29367315644452	0.640645805078054	0.0772081595823904	0.366309530307421
Merged-chr13-105054491-4	chr13	105053982	105054982	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029879, exon 1 of 6)	5' UTR (NM_029879, exon 1 of 6)	448.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	4.14813591348172	3.8501672062256	3.89145995053297	3.59688054000735	3.29786276860618	3.75979113712361	-1.41335323215143	0.0158873952979441	0.13834279749462
Merged-chr16-50763343-4	chr16	50762854	50763854	+	911.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-20055.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	3.77495201281081	3.63119154052266	3.7816222212002	3.63773104925171	4.14251014171368	3.90192193946844	0.600939098898921	0.275550819389968	0.673071953734776
Merged-chr4-132977586-2	chr4	132977086	132978086	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	3491.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.05512779137486	4.59554813128661	4.85974772137612	4.96638766945822	5.06506856290097	5.2601453390873	0.532242862314879	0.185385775352186	0.569470877644115
Merged-chr1-149943859-4	chr1	149943356	149944356	+	811.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	Lx8|LINE|L1	17434.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.92464132049204	5.67192131370011	5.51899384627739	5.52179239031944	5.49336378826622	5.58145972043476	0.225985741586374	0.559112189363734	0.864901733108576
Merged-chr3-67430069-4	chr3	67429511	67430511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138591)	promoter-TSS (NM_138591)	-104.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	4.71379681174097	5.00710310922529	4.59539200558741	4.57935626877667	4.35099185010611	4.3477978396047	-0.873431843006154	0.0460926645882524	0.271482443050586
Merged-chr6-29697291-2	chr6	29696791	29697791	+	766.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	3077.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	2.08383130933815	2.08911036056154	2.02761375536692	2.17437866049029	2.05279802175545	2.30040870601554	0.797186250392253	0.379457707340192	1
Merged-chr5-64961774-3	chr5	64961276	64962276	+	935.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1680.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	7.54900599907813	7.35519976679256	7.42053687008077	7.36001432978998	7.60049884316536	7.51837036569349	0.0795452712403626	0.732278822611077	0.931723932448277
Merged-chr11-21549361-2	chr11	21548861	21549861	+	971.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22573.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	5.26793451008194	5.04985207129537	4.69357314783084	5.45479637539787	5.15783089439732	5.04825630442034	0.406301676978746	0.31748558644048	0.711322568148047
Merged-chr2-38998108-4	chr2	38997637	38998637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-172.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	6.43607368316682	6.3277840683675	6.39491580879316	6.1762867532856	5.98546747700457	5.89323768500663	-0.602778109375884	0.0344091869263179	0.227177626419508
Merged-chr16-17647051-2	chr16	17646551	17647551	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166164, intron 1 of 7)	intron (NM_001166164, intron 1 of 7)	581.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	2.87079826428219	2.60752429031182	3.02915075921248	2.72408204401228	2.53179960225541	2.5542121980601	-1.28758437941362	0.105727877436483	0.433946886288899
Merged-chr19-61031922-1	chr19	61031422	61032422	+	820.666687	f0_balb.idr	intron (NM_018869, intron 3 of 15)	(T)n|Simple_repeat|Simple_repeat	108918.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.48718979470268	3.79655669059267	4.04018480232948	3.05847437530519	2.84193971440603	3.33052377905602	-3.11799289827979	5.64940750221904e-05	0.00174619576316732
Merged-chr14-60284051-4	chr14	60283567	60284567	+	906.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	18862.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	6.49191987979076	6.58327055726979	6.6243578118546	6.66068332551937	7.20935998385005	7.00742598416982	0.653965170293785	0.018945774580156	0.15580549627057
Merged-chr4-88725562-4	chr4	88725027	88726027	+	675.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.24590522524529	4.41607097802071	4.83850656852437	4.77752772009734	4.73764068988467	4.7592983775608	0.592542025237614	0.181521991216559	0.563837608076282
Merged-chr15-5446582-4	chr15	5446083	5447083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49735.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	7.19873427312571	7.35886201170846	6.77270232855202	7.36216414409403	7.59079970628959	6.86458903784774	0.261638252743027	0.396047483995487	0.773321421323894
Merged-chr8-106394581-4	chr8	106394090	106395090	+	940.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20749.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	5.46564118674771	5.72714981050462	5.99272908092715	5.79079854723184	5.9124003847058	5.77155392412039	0.173086562737261	0.599629783083462	0.881122597050421
Merged-chr16-94206084-4	chr16	94205595	94206595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	84196.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	4.01975010210549	4.13090862773349	4.0151732268902	3.72181759109698	3.86776201760241	3.83464095286257	-0.760853989319062	0.13447888069729	0.490254933413278
Merged-chr6-140619927-4	chr6	140619405	140620405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2758.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.93452093187627	5.57702213924512	5.38216621000817	6.19169492026242	5.82389997624084	5.41394745868176	0.351677313272118	0.358472655958566	0.74481965582941
Merged-chr13-60619816-4	chr13	60619325	60620325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	17614.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.10739527458926	6.7779761076873	6.91646445830896	6.42482926139529	6.32038557955008	6.50540296130133	-0.837370195690451	0.00168208928711386	0.0270303757053244
Merged-chr1-95449943-4	chr1	95449454	95450454	+	856.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136326.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	5.00089573812464	4.94584800756045	5.08719516515701	5.04218695576864	5.20838690026408	5.36844440955158	0.418215505568855	0.253654537672915	0.651040648097965
Merged-chr3-109480793-4	chr3	109480295	109481295	+	827.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-93212.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.79302346803335	4.59783457875274	4.74605643284948	4.42449546755593	4.0751491843788	4.58151037772363	-0.872395684499765	0.0550681309770123	0.301531468685179
Merged-chr7-79877961-3	chr7	79877460	79878460	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009682, exon 6 of 6)	3' UTR (NM_009682, exon 6 of 6)	-29750.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	2.87291096386798	2.64070520750867	2.90067926710533	2.88650029729108	2.53453621765825	2.72891673300253	-0.441732571979167	0.564961348968693	0.866552670637515
Merged-chr16-91861527-4	chr16	91861013	91862013	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	70117.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.78481424947532	6.93495457415908	6.81809110856881	6.74068623805028	6.84796884584633	6.77008475395348	-0.0931439911125235	0.707763938462858	0.923531861546016
Merged-chr15-36930627-3	chr15	36930135	36931135	+	665.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	2.77027463430853	2.49231552100266	2.57245840520656	2.70076046021226	2.99074534485085	2.96015317103241	1.43790653563763	0.069392331973516	0.344777999573196
Merged-chr4-102511123-4	chr4	102510642	102511642	+	947.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-58918.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.27108863759821	4.31075594962526	4.36317628639998	4.52147690413335	4.37138504095805	4.38681671765613	0.29993691604255	0.494815102581901	0.832105397244034
Merged-chr12-69296764-4	chr12	69296276	69297276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027117)	promoter-TSS (NM_027117)	95.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	6.54773375368844	6.39784684898589	6.42827578604118	6.40668571362086	6.30823341644155	6.35558815696905	-0.17189574492472	0.52007363104305	0.846159451953973
Merged-chr11-104545968-4	chr11	104545475	104546475	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145436, intron 1 of 18)	B3A|SINE|B2	4645.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	5.17212808113918	5.19553457314541	5.53577508729192	4.88115130336669	4.95924105410487	5.10055885635112	-0.67165019699127	0.0731087943172235	0.355349994599424
Merged-chr2-90552600-3	chr2	90552115	90553115	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L4_A_Mam|LINE|RTE-X	28032.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.82177081314363	5.24329149955202	5.42048669368802	4.8671043996359	5.08143104985336	5.25293503438089	-0.219895725847975	0.58619757629744	0.875415330574598
Merged-chr4-99175344-1	chr4	99174844	99175844	+	705.0	f0_balb.idr	Intergenic	Intergenic	-18590.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.79159414870951	3.82628657651895	4.12950898570211	3.73884703067036	4.01392565617822	4.2798999270843	0.319259273776068	0.55284561798643	0.86196181572131
Merged-chr11-90246447-2	chr11	90245947	90246947	+	679.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.51883152775334	5.18034989419723	5.13171877286417	4.90737054439621	5.22569572542701	5.16230683289325	-0.380373547272616	0.315384982389049	0.709692649130764
Merged-chr14-105435426-4	chr14	105434916	105435916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045859, intron 2 of 2)	intron (NR_045859, intron 2 of 2)	7857.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	4.77344052250051	4.61813743894146	5.01341498756388	5.21541012812275	5.60849080139643	5.39739255142923	1.30906997079217	0.000658030647064396	0.013039631836374
Merged-chr12-112616315-2	chr12	112615815	112616815	+	818.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-3732.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	3.69369118529146	3.30706703621309	3.98000840214009	3.87846517962361	3.46979490466284	3.81526409561262	0.152563520416681	0.806014683205559	0.954102910475772
Merged-chr2-35978759-4	chr2	35978270	35979270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029774, intron 1 of 9)	intron (NM_029774, intron 1 of 9)	854.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	5.86994770021935	5.75244150018796	5.09157270996738	5.56842093293332	5.45464104387523	5.33988305181201	-0.315725593411856	0.410558929626216	0.78346905949881
Merged-chr2-165056000-2	chr2	165055500	165056500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	364.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	6.08693879775645	5.7406732771253	6.05756811152699	7.03581969357766	6.85419054144447	6.45559532128634	1.37887860879839	6.8554786074932e-06	0.000290000337555818
Merged-chr11-29526323-4	chr11	29525786	29526786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133767)	promoter-TSS (NM_133767)	-111.0	NM_001282120	76784.0	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	5.94110210835785	6.1808130157831	5.90198586241918	5.70411391972437	5.93969423768716	6.14183373394669	-0.148979272510471	0.636312410444699	0.8970753299382
Merged-chr5-139344272-4	chr5	139343808	139344808	+	890.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	858.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	4.08585031223703	4.09178102845279	4.18237844572802	4.24350619597039	4.0128432177018	4.01208796742875	-0.066247411667927	0.890486500654719	0.974528422443459
Merged-chr3-97158757-4	chr3	97158264	97159264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-13.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	6.55967607563108	6.91513447136368	6.81156012084434	6.81025120639397	6.98282657921852	6.71473941687891	0.120740058322801	0.652022724478249	0.902896807825606
Merged-chr10-68726649-2	chr10	68726149	68727149	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	2903.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.69673337271679	4.86446499643491	4.63881647545822	4.97916056864232	5.22654984247	5.27815172518465	0.916186861599009	0.0187968209695604	0.155224878844301
Merged-chr6-42396613-4	chr6	42396104	42397104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	7.7427408670958	7.6678691164481	7.35870207756733	7.46960611272504	7.8745102272814	7.51339784224464	0.0477518228512863	0.852343577077565	0.965378390789581
Merged-chr2-103495811-2	chr2	103495305	103496305	+	593.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-10652.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	2.79970598904242	3.13459883712976	2.92316644323379	2.9969397575356	3.06144710176926	3.1156735655022	0.428387383099701	0.537528761614395	0.85459031271205
Merged-chr13-113877609-4	chr13	113877086	113878086	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	83078.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	2.80504059203123	3.05275553065109	3.033676989671	3.20462597776131	3.1283876978042	3.16511647914755	0.893638845552007	0.185665663193147	0.569911016727934
Merged-chr18-80205447-2	chr18	80204947	80205947	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1351.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	2.84713163634903	2.87959197980196	3.16433455936531	3.09821126746307	3.0957273842149	3.39500756080511	1.04911342957128	0.127853488704651	0.478110336080921
Merged-chr7-44997655-4	chr7	44997140	44998140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	-8.0	NR_045611	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	6.6946643510075	7.07233149395934	7.1579525470249	7.0483782409709	7.28474654066926	7.11787035887345	0.261677756258375	0.325039425052364	0.717930571240101
Merged-chr14-26526386-4	chr14	26525892	26526892	+	784.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	8232.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	3.94191793895722	4.07220601014974	3.98320064642881	3.85185533882193	3.86206632290552	4.00373780557168	-0.303354183197183	0.543652619883432	0.857551302506722
Merged-chr5-65535574-4	chr5	65535095	65536095	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1650.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	4.20330299363928	4.17765753693652	4.10086450416111	3.88760601894625	4.17485388696001	4.16924811828861	-0.223035462873468	0.645750840083164	0.900721425246251
Merged-chr7-97155302-4	chr7	97154786	97155786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	73535.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.45117402037469	5.18829579090759	5.45638199135654	5.56066770268656	5.66545955687576	5.65756237193059	0.50320913160826	0.130723016649459	0.483186228268893
Merged-chr7-31110152-2	chr7	31109652	31110652	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008281, intron 2 of 12)	intron (NM_008281, intron 2 of 12)	845.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	6.1913246319789	6.1549979546162	5.31119682334088	6.50310702627401	6.22453489622536	6.13191549174481	0.570760277592285	0.132493137071638	0.487076475632096
Merged-chr5-137872829-4	chr5	137872296	137873296	+	866.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1038.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	4.87784872330158	4.49358796459161	4.94564263275674	4.67166438275021	4.95002317637705	4.90513956926738	0.157780363525867	0.706816379835066	0.923161381966479
Merged-chr10-81997369-4	chr10	81996863	81997863	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50760.0	NM_001319203	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	4.04909098774794	3.99491091763292	4.0758778306	4.10929253456707	4.03560548471799	4.23473590216095	0.243797989230633	0.610949426012675	0.885849400663435
Merged-chr12-85288638-4	chr12	85288132	85289132	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	41.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	6.77050115948601	6.72217860742464	6.32784436839585	6.15130761586214	6.0150820359372	6.08600002681127	-0.903750194055303	0.00175452663020346	0.0279301036628983
Merged-chr5-101948427-2	chr5	101947924	101948924	+	772.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	121497.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.03335858515247	4.82570034872237	4.74749407385197	5.79085076649985	5.67548239220772	5.21093451356454	1.42976240195467	0.000222307342623617	0.00545495410351692
Merged-chr6-146271314-3	chr6	146270804	146271804	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	230919.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	3.4708459434869	3.8929062304	3.60954452583656	3.45501371048436	3.09339353679644	3.15274683961777	-1.65594133134387	0.0120081840926097	0.114335391003303
Merged-chr16-49854316-4	chr16	49853827	49854827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.03538309753144	7.90122417323811	7.69762179973671	8.07325733750965	8.29683330799701	7.35975481711598	0.129323121470048	0.665799757016141	0.907920503949149
Merged-chr5-62933810-4	chr5	62933291	62934291	+	839.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119968.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.90820788609555	3.99813035575406	4.03558296416526	4.54867809855181	4.35993600111625	4.62510090491507	1.45704500968335	0.00198982767066883	0.0308668122335965
Merged-chr13-73469584-4	chr13	73469046	73470046	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	2163.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.48484181129199	4.54557600918999	4.15899819381108	4.60167053035902	4.39961833892001	4.3281371707836	0.0821269740069352	0.85809464839452	0.966810565896068
Merged-chr5-129016315-1	chr5	129015815	129016815	+	584.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3841.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	2.51976461186566	2.51468173013938	2.72935464395346	2.44905887321917	2.52341207081662	2.62225958592103	-0.327112086278334	0.675880774680164	1
Merged-chr8-120682882-4	chr8	120682394	120683394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14574.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	4.99730457711543	4.68275852650728	4.84147142930125	4.72153931583492	4.81403985409105	4.4469245993499	-0.378249329137293	0.369860954835818	0.754352114878
Merged-chr8-122432975-4	chr8	122432484	122433484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007806)	promoter-TSS (NM_007806)	-44.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	8.40807890172386	8.1523102203762	7.98186993658338	8.22931943314444	8.24321603749043	7.95964531883131	-0.0603351034439302	0.798300136342347	0.951930937621884
Merged-chr10-79918243-2	chr10	79917743	79918743	+	822.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053244, exon 1 of 5)	5' UTR (NM_053244, exon 1 of 5)	1272.0	NM_053244	114229.0	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1|kiSS-1R	KISS1 receptor	protein-coding	3.04796017014244	3.05071060488026	3.22940386915757	2.8723737941227	2.76131620773007	3.19191386198089	-0.750113788554735	0.290491790757248	0.688286375230055
Merged-chr6-47354269-3	chr6	47353777	47354777	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99455.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	2.6906886215209	2.81325099511684	2.77980279187393	2.60613304629118	2.57243705499476	2.6680601803412	-0.834686789440891	0.264925014664684	1
Merged-chr17-24736517-4	chr17	24736022	24737022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-71.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	7.38465169103916	7.11848893444323	7.24568361257707	7.35773397795555	7.75513366253776	7.40467300180822	0.400714828982176	0.113936803541319	0.450859089500984
Merged-chr14-73381276-2	chr14	73380776	73381776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4013.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.53286970011805	7.77988991692022	7.19575883345084	7.80458704059859	7.9735948535179	7.02943386235942	0.207308863147008	0.522259773641119	0.847506520484364
Merged-chr8-119412194-2	chr8	119411694	119412694	+	746.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17302.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	3.95396039622773	3.89904703453627	4.12519761553333	3.81349212061184	3.63265235761742	3.96540226941138	-0.594549397316932	0.257439711040521	0.654748449688293
Merged-chr2-153161303-4	chr2	153160803	153161803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	2.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	8.01356510736594	7.89651526098956	7.72850754480017	7.93860989099231	8.11549024591635	7.73977000638764	0.0830785419300813	0.72313055417754	0.928989158354973
Merged-chr1-136581540-6	chr1	136580999	136581999	+	916.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-43402.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.34995607995735	5.38498358378954	5.22300808956778	5.70257974008122	5.87078029666765	5.76039661812036	0.856554842810379	0.00847468180404741	0.0897380152139446
Merged-chr8-83739389-4	chr8	83738863	83739863	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1948.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.25869235876611	8.10519633217901	7.66660288326535	8.51865890934396	8.8508617825662	8.21941444073611	0.72709205117312	0.00849628938777666	0.0898867447397482
Merged-chr4-142053401-2	chr4	142052901	142053901	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-30897.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	3.57510192462623	3.50910312899919	3.4799916185064	3.81245800419547	3.19667224091701	3.76260717623406	0.329573798442995	0.600865834822888	0.881855262262798
Merged-chr9-118795660-2	chr9	118795160	118796160	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	83968.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.02765890187258	3.04903890751835	3.27766613357894	3.2486962774674	3.17494760517639	3.55550466794584	0.884461085187257	0.175793954204325	0.555796920033189
Merged-chr19-12591120-4	chr19	12590631	12591631	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	5435.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	3.66668163366822	3.71916869396855	3.71777613695994	4.20330039043257	4.18128223634386	4.23173094989776	1.55219955661174	0.00220340218567749	0.0332440052703268
Merged-chr8-109682801-2	chr8	109682301	109683301	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 2 of 10)	intron (NR_155034, intron 2 of 10)	10493.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.43432302746722	6.69159933106767	6.45240994942007	6.47413259362862	6.97916260476319	6.83967861695013	0.394619448487419	0.170072408731247	0.547336855242915
Merged-chr16-31928540-3	chr16	31928043	31929043	+	713.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-5308.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	4.45402315433599	4.20449255442597	4.03314703183357	4.66342812000127	4.38730120799892	4.64929366894052	0.806715063741611	0.0878893135432787	0.393367435926477
Merged-chr4-133131410-5	chr4	133130879	133131879	+	865.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	746.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	7.558292119839	7.53760966429913	7.57205803505648	7.59661131854203	7.95402345888297	7.51963508259048	0.230041087961943	0.341336530294376	0.730816878642537
Merged-chr3-107778165-4	chr3	107777635	107778635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	3.66000304635163	3.29762025909478	3.52480780732355	3.11393220716204	3.32647350454637	3.4896477827636	-0.714008319304025	0.260113933327672	0.657649400461384
Merged-chr7-82828518-2	chr7	82828018	82829018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38815.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	3.1478092831441	3.39750544211266	3.2465547503617	3.24692752569055	3.61564943680977	3.31918686080769	0.549961085699316	0.388857351226237	0.768757717733778
Merged-chr7-141475381-6	chr7	141474899	141475899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	163.0	NM_053082	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	6.8311450485221	7.07918798688016	6.93331055675685	6.98315692900824	6.98103974155028	6.57628147033376	-0.126245701462141	0.638237668095029	0.897402411146899
Merged-chr17-65854231-4	chr17	65853750	65854750	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 6 of 9)	intron (NM_001198949, intron 6 of 9)	30673.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	5.26702225813395	5.73709650290328	5.76877508266398	5.45060428282053	5.3986320408008	5.36523637823553	-0.380143333705006	0.283148716250833	0.68116389716285
Merged-chr4-127027498-4	chr4	127027026	127028026	+	777.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045010, intron 9 of 11)	intron (NR_045010, intron 9 of 11)	6225.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	3.55044253640737	4.07354281491429	4.14124600663786	4.07364133094266	3.8767477220726	4.16469302433735	0.278700983506746	0.616264173357734	0.888323384760338
Merged-chr9-59724080-2	chr9	59723580	59724580	+	584.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16316.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	3.21021515294194	3.01123861991393	3.230273105728	3.03114757731939	3.2015304600666	3.30112555337273	0.12417329023562	0.848669098641443	0.964356989789491
Merged-chr10-10120671-4	chr10	10120161	10121161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219621.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.22559357703907	5.72074993142024	5.35886547978267	5.50610631821989	5.05281462352158	5.00751597114671	-0.485181586821638	0.217778248587036	0.611758296763447
Merged-chr9-44318540-4	chr9	44318088	44319088	+	784.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	1694.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	5.20066170869537	5.53658095477586	5.46466440568235	5.35044893503472	5.44880278474436	5.73775605007685	0.204595172514959	0.561941728939559	0.865601232581785
Merged-chr5-141057656-2	chr5	141057156	141058156	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57060.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	2.95821122519065	3.10737920654907	3.12416926235767	3.3545616996198	2.83118383020708	2.81956367926046	-0.154064004393831	0.834691814289375	0.96138272464184
Merged-chr13-9766502-2	chr13	9766002	9767002	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.0250507594807	3.0345606443699	3.10231924579291	3.211803231253	3.09243630258717	2.99335372888814	0.233834572481813	0.721629394158372	0.928555409719137
Merged-chr11-118275242-4	chr11	118274720	118275720	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	15024.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	5.01260732378701	4.44253275724849	4.96659560743693	4.5635672595448	4.46773782612155	3.9824977468816	-1.10910858510794	0.031766488541013	0.216150804189643
Merged-chr9-66213777-4	chr9	66213267	66214267	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	55541.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	3.49849332023411	3.43484642001119	3.50746472914584	3.66657707391724	3.28934647898321	3.29150987872567	-0.186440399468653	0.759037087429317	0.940311236380535
Merged-chr8-106585829-4	chr8	106585325	106586325	+	920.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1318.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	3.84407284122355	4.13165000457964	3.84113051837556	4.11494835446837	3.95538279391401	4.37320978930614	0.573015252268231	0.270204961854434	0.667203280387572
Merged-chr9-100504538-4	chr9	100504041	100505041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	L3|LINE|CR1	2315.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	7.51488317150532	7.90887619403496	7.22875772534451	7.40655531108926	7.86473925774411	6.88489371580175	-0.186665148592868	0.578834191974891	0.872437129840066
Merged-chr5-145114763-4	chr5	145114273	145115273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	CpG	517.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	8.34998898226542	8.57164267178173	8.43830064384189	8.2963169143453	8.54302662826612	8.24832822146801	-0.1159731356517	0.595588827102916	0.879549293510723
Merged-chr17-29438478-2	chr17	29437978	29438978	+	738.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52567.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.08141250807875	3.00390868316323	2.9461421797144	3.51162558250837	3.42167905490658	3.21333003808716	1.61587770911796	0.0153666562427093	0.134961867494549
Merged-chr2-154547799-2	chr2	154547302	154548302	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021546, intron 5 of 12)	intron (NM_021546, intron 5 of 12)	-1102.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	3.26128327677475	3.09436408373854	3.25116169353988	3.04268553503357	2.86578882832861	3.21129566517626	-0.725708224147634	0.281210406168997	0.679363447090677
Merged-chr4-46565817-4	chr4	46565304	46566304	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	636.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	6.60084248375668	6.49205628070655	6.61596212598117	5.96778290865479	6.03191332494175	5.89457069994051	-0.99275746412168	0.000361576597320162	0.00811820440092177
Merged-chr10-61715282-4	chr10	61714758	61715758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284300)	promoter-TSS (NM_001284300)	-5.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	3.58808898005721	3.49679958002297	3.38887395615698	3.24010232522952	3.49767136107692	3.40358952466595	-0.407414782515323	0.498645439927458	0.833995774180582
Merged-chr18-38351010-2	chr18	38350510	38351510	+	801.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-12017.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	5.95330029736377	5.62216856235314	6.263583278358	6.21686078622971	6.02595657108872	6.05891726231782	0.24602188891162	0.452604414597747	0.809456767794566
Merged-chr6-87839864-2	chr6	87839364	87840364	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	6.44984852884611	6.57006725097073	6.54210136585422	6.43613152268433	7.00111011312762	6.08609492995511	0.0984418392547491	0.769372486155952	0.94311644544783
Merged-chr1-88232666-2	chr1	88232166	88233166	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 6 of 41)	MTD|LTR|ERVL-MaLR	5646.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.59136211286905	3.76935053653937	3.69945944362771	3.67655718169635	3.50528969484754	3.96197462566716	0.0967314443321763	0.864009131125502	0.968269312109804
Merged-chr8-41002108-2	chr8	41001611	41002611	+	910.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001005863, intron 8 of 13)	B1F1|SINE|Alu	-15357.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.10891133837951	5.17622134842551	5.34620815887565	6.11287294128836	6.2950882938863	5.91263683102931	1.7028348125477	1.85075562300245e-07	1.22903171491451e-05
Merged-chr16-18426478-4	chr16	18425975	18426975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	58.0	NM_013711	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	6.47467454148838	6.63446826303623	6.34811032918593	6.48631018771986	6.40213028171391	6.28670817716398	-0.16299229848617	0.551940035470487	0.861546661145201
Merged-chr2-71377636-4	chr2	71377151	71378151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10097.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.51335077332177	5.65864000229336	5.58674653181211	6.42385939477106	6.59995623770466	6.26183852982954	1.47850518477975	8.15287622855354e-07	4.53162675501324e-05
Merged-chr12-38929122-4	chr12	38928613	38929613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145402.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.92289962409506	5.38883949869067	5.05759903558903	4.80849872685225	4.82303441216996	5.34060164538582	-0.295450514044543	0.479070341777043	0.823998431318037
Merged-chr17-33640176-7	chr17	33639604	33640604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028279, intron 1 of 9)	intron (NR_028279, intron 1 of 9)	2009.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	6.70663478158925	6.54929743867459	6.6242973876924	7.01433434498978	6.78929077676971	6.63243790394522	0.310764776345912	0.241198606746424	0.63836806737353
Merged-chr6-148436607-4	chr6	148436124	148437124	+	962.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	7728.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.17960204547111	3.99530712483503	4.05186174627234	4.20671574520477	3.94136387315302	3.91961110560416	-0.141975916595727	0.775216788684877	0.944594834759211
Merged-chr17-35047967-2	chr17	35047432	35048432	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	5.74810799148217	5.86168424101062	6.07925148831342	6.09621060624423	6.15136225883925	6.11835251747788	0.399165993575033	0.177986236347773	0.559011012494829
Merged-chr16-36637933-2	chr16	36637433	36638433	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L3|LINE|CR1	28144.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.72158315130779	4.78263332686905	4.76832594425538	5.09318847755701	4.85598546215216	5.05194359621822	0.535863417487651	0.165351571316804	0.540229839254305
Merged-chr16-30009105-4	chr16	30008615	30009615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	CpG	448.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	6.44552595838007	6.00257842014514	6.62447677145552	6.76133175544193	6.38210634017587	6.18082020781761	0.150490918456864	0.64868430406298	0.901893237722341
Merged-chr9-106330890-1	chr9	106330390	106331390	+	731.0	f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-37742.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.7937008206457	3.48096100864456	3.6066684030522	3.88833328811679	3.87639216580204	4.16484778790155	1.09819302367863	0.0466970891356981	0.273397853419545
Merged-chr12-110908011-3	chr12	110907514	110908514	+	926.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 3 of 20)	intron (NM_175336, intron 3 of 20)	18750.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	4.64386961992511	4.72162532071627	4.83310429259498	4.16733238840465	4.43374838682679	4.60083452853595	-0.792964585494534	0.0711974730152898	0.350012782209787
Merged-chr4-138205378-1	chr4	138204878	138205878	+	690.0	f1_balb.idr	intron (NM_001355700, intron 30 of 30)	B1_Mus1|SINE|Alu	-11234.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	2.33443808423574	2.23172073084011	2.44092401380833	2.17051706037339	2.25196014601306	2.32489755009638	-0.582420261175997	0.496176308028413	1
Merged-chr18-44827860-3	chr18	44827350	44828350	+	994.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-815.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	6.18394021552756	6.51326055858742	6.18245762348394	6.715490586492	6.89746835923406	6.15211173074986	0.532224298076147	0.100968088554066	0.423786054625959
Merged-chr3-133546503-1	chr3	133546003	133547003	+	613.0	f0_c57.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2113.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.2109859165735	5.11537837467406	5.27680843349664	5.09327926941758	4.99610901079051	5.27879048448622	-0.167463848142884	0.64308092395642	0.899621343654435
Merged-chr7-126725325-4	chr7	126724802	126725802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-20486.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.86232567714044	4.83802324248709	4.87705444834594	4.61518117745222	4.68535446953761	4.97641565895811	-0.22834018097382	0.567381950549099	0.867939797427831
Merged-chr14-37164689-3	chr14	37164154	37165154	+	617.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29332.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	4.13859444565502	4.34540407591112	4.36237724634548	4.2202064145734	4.25398475159889	4.50935461203454	0.116119232890998	0.801355724942397	0.952927660111857
Merged-chr12-102414668-3	chr12	102414169	102415169	+	946.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	25144.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.11889882973948	4.90402311522132	4.87128310890058	4.51751649590606	4.72258527586173	4.66273212203463	-0.758278595898519	0.0596847657663155	0.316241084429673
Merged-chr10-118795195-4	chr10	118794684	118795684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73719.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.92991159856775	6.124031916769	6.05797413229584	5.97362377792416	5.9336930124342	5.48076475518077	-0.369289730939851	0.253983297874886	0.651117231535132
Merged-chr10-111516314-5	chr10	111515731	111516731	+	913.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9945.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	4.01805903796171	3.85664752571088	3.77433535356264	3.74773913960399	3.62000395029223	3.79254083945831	-0.569314273840285	0.283621878467392	0.681376161050487
Merged-chr9-5308174-4	chr9	5307673	5308673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-676.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	6.28505280311889	6.43826447847398	5.94159678171548	6.13216248586363	6.20975371834133	5.95329347354617	-0.235207730575932	0.443924867598207	0.803884349333946
Merged-chr2-152789683-4	chr2	152789175	152790175	+	976.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35502.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	5.61373252246008	5.63936222426022	6.15616740025608	5.9087974974288	5.92878787147234	5.96394535599249	0.213956302242102	0.517200744535252	0.844527100635531
Merged-chr11-83665935-1	chr11	83665435	83666435	+	635.5	f0_c57.idr	Intergenic	Intergenic	3351.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	3.83239525619534	3.47768827766565	3.97554893234676	3.85173876886493	3.60540161294314	3.75388329748955	-0.11032597082261	0.846195516617237	0.963969175908205
Merged-chr15-98512497-2	chr15	98511997	98512997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	7337.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	8.07204387809507	8.18610207854046	7.94209640214044	7.95748736713444	8.47357462164637	8.02115448566437	0.14984980625133	0.546783760696827	0.85898091530532
Merged-chr2-75732727-2	chr2	75732230	75733230	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-28067.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.21690619936412	5.89231472224919	6.23324959852413	6.36142264767779	6.55928184304687	6.31344541681115	0.508128244632294	0.0825347212307529	0.380010462824728
Merged-chr19-10457530-1	chr19	10457030	10458030	+	588.0	f1_balb.idr	promoter-TSS (NM_001111140)	promoter-TSS (NM_001111140)	-83.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	2.3705007934912	2.37379811654975	2.53462881005373	2.56392068043904	2.30172207765069	2.66984767333519	0.5489224034657	0.506243402593711	1
Merged-chr10-21992560-4	chr10	21992082	21993082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161849, intron 1 of 11)	intron (NM_001161849, intron 1 of 11)	359.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	8.15316237659155	7.99248434458183	8.19303553944292	8.20680151150131	8.34847379196353	7.76894134470081	0.0366992870656581	0.882084147206243	0.973002238292341
Merged-chr3-83863140-4	chr3	83862647	83863647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21539.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	7.66023267619145	7.49634212438983	7.26449346990985	7.5246365301743	7.40587194530943	7.2369043382728	-0.135652667283438	0.583117783746605	0.873907285988058
Merged-chr17-81712612-4	chr17	81712115	81713115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	25772.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.32230246204987	6.18913008728508	6.17433568735111	5.93041780250898	5.9901805574766	6.44228107839061	-0.174596432012415	0.570355359742507	0.869165998050818
Merged-chr19-11917939-2	chr19	11917438	11918438	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	B4A|SINE|B4	5539.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	5.76451673342855	5.73967373366952	5.77284091891798	5.68343705670217	5.4234847545077	5.50802692965272	-0.404332319420226	0.20464486470135	0.595326381235491
Merged-chr10-128057913-4	chr10	128057412	128058412	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1070.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	5.55820245517699	5.30087761655869	5.20928408232952	5.47208323610033	5.48190769482418	5.30710449292205	0.108610712828726	0.755193515248874	0.939242515534853
Merged-chr10-118810482-2	chr10	118809982	118810982	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	58421.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.85317588000197	6.47395390422107	6.80875004494309	6.75660469303954	6.79219397108036	6.83788371365377	0.118358773026791	0.656781468369316	0.904693205515276
Merged-chr11-4974773-3	chr11	4974277	4975277	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-12047.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	4.26052164849101	3.97173137732295	4.18807706281824	3.79637138857593	3.81518475054805	4.25509538031761	-0.533829056525751	0.307509613676066	0.70364261177973
Merged-chr3-117868977-4	chr3	117868503	117869503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029655)	promoter-TSS (NM_029655)	-67.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	6.63904815412313	6.774344356972	6.56305949137196	6.36014275718742	6.52445824579528	6.53530905119016	-0.307366917019508	0.244842990288102	0.642292795126316
Merged-chr11-19925581-4	chr11	19925082	19926082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	CpG	1140.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	8.87953271181962	9.15618220621369	8.5864087295406	8.57097825812012	8.7145335131312	8.30327906282836	-0.48792349674455	0.0497468167874627	0.283690845812569
Merged-chr9-110407302-2	chr9	110406802	110407802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081043, intron 1 of 24)	intron (NM_001081043, intron 1 of 24)	908.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	5.72443057724004	6.03952110256994	5.29273754381561	5.80934301547926	5.78357794421806	5.42730977838465	-0.0784193157047543	0.83378140500569	0.961104751385188
Merged-chr13-98834574-6	chr13	98834119	98835119	+	796.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19170.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.02615569146009	4.95486113802495	5.3922391074646	4.83554807999993	5.35944979806351	5.39848040470264	0.19253333307747	0.63479715485204	0.896354115104213
Merged-chr3-145576235-4	chr3	145575728	145576728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346521)	promoter-TSS (NM_001346521)	12.0	NM_001346521	229937.0	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	3.97453652936128	3.95944369990965	3.73707975092173	4.13245236213604	3.76678146006038	3.80905763537209	0.038726935032707	0.942117660441526	0.987097394617189
Merged-chr2-38478953-2	chr2	38478453	38479453	+	582.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32744.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.37473938785166	4.24867032230093	4.41666579410171	4.01715298679622	4.0341444960265	4.13200425465538	-0.800566034716925	0.0867765470129658	0.390296683336737
Merged-chr14-66812446-4	chr14	66811946	66812946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	56154.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.89442659189481	4.852246297452	4.84041566354078	4.67203380711977	4.54643812868455	5.04313538274171	-0.244303205502241	0.5539136775327	0.862575362378324
Merged-chr10-61146364-4	chr10	61145853	61146853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316674, intron 1 of 14)	CpG	1331.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	8.13958935624987	8.14476854682166	7.9838630139169	8.15696154217795	8.03613164423341	7.97128556610985	-0.0513991576464934	0.809092123908985	0.954721853010197
Merged-chr10-8817408-2	chr10	8816908	8817908	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	(TG)n|Simple_repeat|Simple_repeat	68662.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.30099958634287	4.82761983712353	4.87903573847154	5.44663171479883	4.85091783263237	4.69516226142155	0.0417871682275511	0.926079863563958	0.983305773102619
Merged-chr11-59209282-4	chr11	59208751	59209751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024210, intron 4 of 6)	intron (NM_024210, intron 4 of 6)	890.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	6.36356477423706	5.81295350280117	6.3937520689277	6.2078065827865	6.08825952076862	6.82063026886658	0.317800209875013	0.375039618768843	0.758377211092613
Merged-chr1-36074981-2	chr1	36074481	36075481	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	6581.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.85972213570758	5.71609935714262	5.73129212369264	5.98809955731195	5.97883097993027	5.65541964936025	0.21601541979203	0.490153345177489	0.830031090218234
Merged-chr12-99883511-4	chr12	99883018	99884018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-76.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	4.65830343828491	4.8902253481473	4.63366054282894	4.65302428652337	4.81218517685067	4.70051517344636	-0.0259705709523258	0.949179541095265	0.988169196639905
Merged-chr5-107950830-4	chr5	107950321	107951321	+	807.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	36256.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.38578750336489	5.34331207967642	5.69525707085524	5.64009272041063	5.54553423755672	5.93894285309222	0.447430075541018	0.193988389709821	0.581296310830689
Merged-chr13-113605602-3	chr13	113605125	113606125	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12939.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.68271279430477	3.97454507422438	4.44162649460868	4.58271622372801	4.1961883077543	4.66788340977827	0.228625040738653	0.656493915952951	0.904654860421566
Merged-chr14-31408038-4	chr14	31407538	31408538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	9639.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.67707935069916	6.72292138396096	6.34434795611326	6.29868760430894	6.47110563410894	6.34437658205205	-0.362573827876425	0.194297631387083	0.58150914727201
Merged-chr2-152295892-2	chr2	152295392	152296392	+	613.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	B1_Mur2|SINE|Alu	2020.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	4.14642618632178	4.02431228216259	4.03995542508879	3.93225393849685	3.8512625769595	3.80481730181982	-0.629236838607695	0.208303804404944	0.599165811939819
Merged-chr8-10711240-4	chr8	10710735	10711735	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171219.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.90911583037952	4.8171206012369	5.06337406076085	4.38435031313989	4.21071541909045	4.41717070979276	-1.45502840707967	0.000639924519663134	0.0127642846350183
Merged-chr8-75062208-2	chr8	75061708	75062708	+	937.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	28522.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	4.12924922494147	4.14280367519142	4.75894691565032	4.24505340533915	4.45846234538597	4.03460846202136	-0.271382049134345	0.60461515306221	0.88314896167691
Merged-chr16-91846617-4	chr16	91846098	91847098	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	85032.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.34533620325443	6.49648984252367	6.72215246335223	6.55014796520665	6.87119466811756	6.65517325197722	0.29203214856801	0.294915332475729	0.691802968915873
Merged-chr2-174471025-3	chr2	174470518	174471518	+	956.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	1923.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	4.50432811337565	4.59677359338443	4.99951178415248	4.84274778887235	4.84555791061051	4.92851540346865	0.381238023201805	0.358930864905578	0.74519810754794
Merged-chr15-51920605-4	chr15	51920097	51921097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43156.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	3.52135978473479	3.71973058153452	3.72295543795916	3.40043378827815	3.52745430905393	3.69194254374806	-0.406529761368148	0.475765762482055	0.822187741481793
Merged-chr1-173802943-3	chr1	173802446	173803446	+	744.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36027.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	4.26812044987074	3.57903836424166	4.35107061178026	5.305953412512	5.24489531155804	5.21786375120467	2.72813945361227	0.0301102201031749	0.209475357108058
Merged-chr4-41368450-4	chr4	41367970	41368970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 2 of 6)	intron (NM_001355508, intron 2 of 6)	16507.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.90718900480946	5.46996039784198	5.46842139688311	5.66682215080812	5.61012310447775	5.34022862535166	-0.159076244613904	0.652533104694844	0.902986290245403
Merged-chr3-146659059-2	chr3	146658559	146659559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7742.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	2.54828237792262	2.43757065623066	2.77021497455737	2.4196767770456	2.46208052273467	2.95479606810173	0.226099967927819	0.787284731142731	0.948765654678185
Merged-chr15-31564828-2	chr15	31564328	31565328	+	774.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4005.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	4.97814181061202	5.12301404043675	4.76546930485761	4.48098282972628	4.35855442980098	4.40177886346565	-1.32984901488832	0.00149731748684731	0.02468571298704
Merged-chr5-34338034-2	chr5	34337534	34338534	+	734.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304270, intron 1 of 7)	intron (NM_001304270, intron 1 of 7)	1102.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	4.55556567707603	4.73001309117436	4.45212100962804	4.78052280506632	4.74750371384843	5.05383995269333	0.617014612686652	0.140043944476531	0.500144629900091
Merged-chr1-156861827-3	chr1	156861297	156862297	+	784.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028333)	TTS (NM_028333)	22774.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	3.62655384511824	3.5084898328869	3.56259049067584	3.19698837813763	3.05259046526469	3.36316097575847	-1.48736559249998	0.0180598765843191	0.151149286947095
Merged-chr12-4843955-4	chr12	4843450	4844450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170858, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	647.0	NM_001170858	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	6.52618239561223	6.82523507388086	6.40664269008521	6.62410549209288	6.90843949098233	6.18914545148955	0.0269001113708477	0.93277586609941	0.98531684549485
Merged-chr4-75262544-1	chr4	75262044	75263044	+	673.0	f0_balb.idr	Intergenic	Intergenic	15748.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.12904569124496	3.26786172332559	3.3773860651789	3.24312503048239	3.17214232863545	3.10652796195409	-0.337674826718183	0.594980403562716	0.87924603206665
Merged-chr1-134195465-2	chr1	134194965	134195965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	2017.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	4.71951598878979	4.65635277758107	4.68088284731882	4.67600689933158	4.75913757008792	4.53896010114481	-0.0380724816886049	0.925420901522824	0.983183533267328
Merged-chr19-32792817-1	chr19	32792317	32793317	+	701.333313	f0_balb.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	35240.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.64609971448601	4.81895571582338	4.67899948239892	4.56422302792718	4.68046255603786	4.62395241058983	-0.221027967865327	0.587092186144518	0.875769926947203
Merged-chr14-17414721-1	chr14	17414221	17415221	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-246239.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.44295930820229	6.83839371067307	6.35202999305764	6.19691026290101	6.45040745304879	6.69069304470815	-0.18458619264841	0.547901891648656	0.859455567919717
Merged-chr6-82652625-4	chr6	82652119	82653119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025882, intron 1 of 3)	CpG	246.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	7.41440935191275	7.76374451509207	7.12999135615096	7.44957325725156	7.24470799469261	7.18779980413166	-0.253296996062416	0.352248743348163	0.739888459678721
Merged-chr1-192745218-4	chr1	192744686	192745686	+	846.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	26033.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	4.20455530655111	4.12392250835215	3.81989622819445	4.64608439105742	4.59998762103649	4.17110720532989	1.13674365286235	0.0257873847402685	0.190417216284609
Merged-chr12-51741816-2	chr12	51741316	51742316	+	672.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49902.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	2.29326394494364	2.47252135847525	2.47003155950106	2.51804841504224	2.39486508498291	2.66812203807064	0.689517863458146	0.398777439857911	1
Merged-chr9-7332040-4	chr9	7331559	7332559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12338.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	4.95766801569999	5.16873771625852	4.81831359852588	4.72159440095397	4.55779489222401	5.15984538197341	-0.378951297722923	0.374200849136666	0.757933699438553
Merged-chr12-82261770-4	chr12	82261278	82262278	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-49571.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.16309461834267	5.16504441268144	5.51633199688466	5.53710219442893	5.74945860839361	5.55102458856644	0.664601094443418	0.054494536138526	0.299780366450488
Merged-chr3-84820457-4	chr3	84819966	84820966	+	904.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	MER58A|DNA|hAT-Charlie	4889.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.4353094554088	4.47308005797464	4.21883162059488	4.36383336531105	4.48144096552354	4.633404642285	0.263097580540367	0.55431662542728	0.862763733809177
Merged-chr1-45917306-4	chr1	45916866	45917866	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	8228.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.3273430499292	6.25656423039507	6.15830466852977	6.48809083334997	6.61229826613199	6.15206304047234	0.314133272849314	0.279360614951648	0.677026797020352
Merged-chr9-96713325-4	chr9	96712838	96713838	+	856.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	6107.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	5.80751399983343	6.28467335725044	5.89320547232708	5.49205371806645	6.0037355073718	5.6080917818297	-0.502767520632525	0.155404491885493	0.52509823972611
Merged-chr14-61415992-2	chr14	61415496	61416496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	MTA_Mm|LTR|ERVL-MaLR	23951.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	2.77377655712257	2.6680971961876	2.83466272939973	2.75082320563181	2.70165738738641	2.7863284167443	-0.0684925833379747	0.924532789709798	0.982973950833402
Merged-chr7-83615968-1	chr7	83615468	83616468	+	835.0	f0_c57.idr	exon (NM_177695, exon 18 of 23)	exon (NM_177695, exon 18 of 23)	-16049.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	5.36053652878641	5.46196688511251	5.24145866157415	5.39660903114181	5.36898069985537	5.49044104130694	0.0971811655443515	0.773540711024749	0.94412263195524
Merged-chr2-49452108-4	chr2	49451601	49452601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	CpG	615.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	7.81342860241374	8.03854587239841	7.57674849783284	7.99461766115943	7.79032692155644	7.31152102475896	-0.131200476856874	0.637855264228277	0.8973803061326
Merged-chr3-79239382-4	chr3	79238887	79239887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	26468.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.31680068849977	6.41805814108475	6.56748410023182	6.43650643552136	6.8961963884708	6.8274684562196	0.487808202722883	0.0859497271349617	0.388215443244267
Merged-chr8-84436112-1	chr8	84435612	84436612	+	668.0	f0_balb.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	20748.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	3.15213897163075	3.1515004390711	3.07569516170387	2.495984112636	2.40115700570715	2.71912799160023	-4.48720473092945	7.37679937201214e-05	0.00219060928674656
Merged-chr9-111047466-4	chr9	111046960	111047960	+	995.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9784.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.987420857309	4.99799773012809	5.09399111294717	5.42109505357138	5.18046627713602	5.40733016808857	0.644885869352623	0.0720271574837366	0.352439618930124
Merged-chr2-18899375-3	chr2	18898822	18899822	+	817.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-97504.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	5.36874377133696	5.03873300392271	5.01651117343564	5.17757808830072	5.28045190563232	5.54821251302915	0.359583391759356	0.336768724635404	0.726839728152484
Merged-chr19-3942419-3	chr19	3941926	3942926	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161428, exon 6 of 10)	exon (NM_001161428, exon 6 of 10)	7240.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	3.92245768239296	3.77815336299678	4.08108481469821	3.89245121779792	4.0764405098598	4.0093925270143	0.219035013953557	0.66590564281612	0.907947624137969
Merged-chr5-21056179-4	chr5	21055694	21056694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-283.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	7.37209826292447	7.28739499355115	6.9491024503086	7.19763108642757	7.26970869208844	6.91851796689586	-0.117744683817332	0.655219038101881	0.904167065613807
Merged-chr2-91723561-4	chr2	91723068	91724068	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	6.28815691727029	6.35147127357972	6.19406713721181	5.71644856000626	6.27484473562025	5.93785438530621	-0.459763168325854	0.146945554376385	0.511487796876645
Merged-chr9-118679038-4	chr9	118678543	118679543	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	MTD|LTR|ERVL-MaLR	-32649.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.39203780547184	4.03864447187344	4.33425785333501	4.30740868857103	4.54297108341382	4.75492541733776	0.722123566561203	0.124570341084793	0.472283974371908
Merged-chr17-43570638-4	chr17	43570144	43571144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	2193.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.42921984373311	7.22905978635757	7.33436346105144	7.2010812485888	7.2981321806004	7.35888017837599	-0.0705286344873654	0.762168162386984	0.941471897030866
Merged-chr18-32399741-4	chr18	32399229	32400229	+	764.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-21445.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	2.84169212833013	2.60823960463394	2.89911684669859	2.71074872644748	2.7068524075422	2.79274157934446	-0.261257144953533	0.723469492629097	0.929080239793919
Merged-chr10-118012146-4	chr10	118011665	118012665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86706.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.51737960301129	6.6285921067744	5.94878512073397	6.28797255093657	6.47127321068204	5.87731139217979	-0.264932610922997	0.442081450638384	0.803076081297089
Merged-chr7-99091404-4	chr7	99090914	99091914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	49730.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.53064745015753	6.27059591400988	6.19628150293853	6.25639018662626	6.37458460850833	6.00447093491657	-0.189078312021503	0.524933438961311	0.84884700169621
Merged-chr19-12463899-4	chr19	12463405	12464405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3126.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	8.72549028440041	8.92431866109063	8.46919608327476	8.72356564772575	8.90446058733487	8.46112919695501	-0.0139294193546918	0.953749033332981	0.989446911725587
Merged-chr5-117182562-3	chr5	117182097	117183097	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	L1MB7|LINE|L1	49009.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.99847766970348	6.56581889570655	6.51104978142259	5.95703681567025	6.04433691020504	5.90138208551134	-0.687071180450952	0.0307717149609013	0.212186364338003
Merged-chr17-29093728-4	chr17	29093241	29094241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007669)	promoter-TSS (NM_007669)	-28.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	5.00907299838713	4.69478697670831	4.83758360966034	4.79393676662396	4.37261864344929	4.75230344902204	-0.487178397359866	0.255317464708973	0.652410883625717
Merged-chr5-86100869-4	chr5	86100403	86101403	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 7 of 7)	intron (NM_001310639, intron 7 of 7)	29157.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.60894811589566	4.81139684818215	4.84927462441226	4.49507940833545	4.73968005037827	4.72874444601948	-0.224983216571043	0.585345788920714	0.874958242973642
Merged-chr6-21954931-4	chr6	21954426	21955426	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	MTD|LTR|ERVL-MaLR	5311.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	6.25894731282845	6.41623683338033	6.09254495515334	5.89731828158682	6.1231705139605	6.01597503505959	-0.425355701248481	0.149073001314515	0.515274779276237
Merged-chr13-43805357-1	chr13	43804857	43805857	+	549.0	f1_balb.idr	Intergenic	Intergenic	20245.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	2.27586677534424	2.24118892458282	2.46096737814713	2.17787487650904	2.09987137263681	2.59496208942823	-0.135557568959377	0.881245494740429	1
Merged-chr6-125230218-2	chr6	125229718	125230718	+	801.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145391, exon 3 of 7)	exon (NM_145391, exon 3 of 7)	-1058.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	2.68229958223133	2.57255084049249	3.00570031353425	2.75342906371475	2.79990752051985	3.07705995800839	0.599728976966744	0.43216874925425	0.797270167804312
Merged-chr5-99325995-4	chr5	99325501	99326501	+	992.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-73074.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.21406714605975	8.62290299647897	7.85131626361161	8.07868539092295	8.41788158462866	7.74493795859004	-0.221525067554138	0.457805846002283	0.812540681905075
Merged-chr5-96161085-3	chr5	96160582	96161582	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	CpG	465.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	7.58003954187755	7.85802324176896	7.61664178161937	7.48253648802651	7.29199325342625	7.21197837613368	-0.522982124135526	0.0289601989435076	0.204183953645874
Merged-chr2-151001863-3	chr2	151001364	151002364	+	818.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	7534.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	3.16986216055301	3.34715761235603	3.22497094167047	3.29140543570482	3.15850310674356	3.17947955340643	-0.17002474870367	0.78645294315799	0.948503833695066
Merged-chr12-21315830-3	chr12	21315356	21316356	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	-536.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	4.4552415321896	4.57763421819055	5.0227361978506	4.01923730182074	4.15947172806649	4.58079079292856	-1.09377946969696	0.0280887062735987	0.200412028092402
Merged-chr11-46793077-4	chr11	46792583	46793583	+	953.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-17716.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.62954404996015	5.67885922455614	5.75784846661101	5.60044329583924	5.46172702924661	5.58235201835078	-0.263353767428535	0.406427392335632	0.780676741566939
Merged-chr7-16405762-1	chr7	16405262	16406262	+	1000.0	f0_balb.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4566.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	6.54151480573695	6.85858892102057	7.44869730926724	6.80937173081985	6.81926260584148	7.09460778456162	-0.135632075031555	0.674837224839966	0.911865018776908
Merged-chr19-8953210-4	chr19	8952724	8953724	+	904.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-608.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	6.10420632257812	6.21206254863735	6.20731193309712	6.06138379127121	6.28586825863534	6.07422762738923	-0.0353230861661524	0.90177235705206	0.977356766938531
Merged-chr4-45473339-4	chr4	45472836	45473836	+	966.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	57492.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	5.8132005449329	5.97197850369434	5.44011392394606	5.85180271050174	5.58533423040723	5.1900262961796	-0.348534875494893	0.353479202027825	0.740735826287885
Merged-chr7-122210252-2	chr7	122209752	122210752	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9244.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	5.09854567912483	5.63381565804546	4.99853181409971	5.10423635832717	5.43894396370876	5.37153365237748	0.0525307398587266	0.89555108440038	0.975665889379756
Merged-chr12-3871877-4	chr12	3871369	3872369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-9625.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	7.38272579254999	7.42080275786904	7.40959988744133	7.28539252527365	7.24204093063684	7.32646237555913	-0.180673391713799	0.421392600670219	0.790262902892303
Merged-chr5-77245676-4	chr5	77245155	77246155	+	828.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19839.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	5.39089586619652	5.18399903388572	4.96851327753772	5.75208304229803	5.8234506943625	5.07704930349245	0.777864425600274	0.0534709107954605	0.296510881562352
Merged-chr2-35232913-4	chr2	35232436	35233436	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-23423.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	6.2369955910998	5.98753721334544	6.00492307128526	6.08249713497667	6.44021806441591	6.0892957458632	0.238848011444842	0.432616005006736	0.797386699146392
Merged-chr6-39120303-4	chr6	39119766	39120766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	RMER16|LTR|ERVK	1793.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	6.29080231409644	5.96327536082464	6.10050180636811	6.0331601578487	5.89825731226208	6.05105579387884	-0.233567771333373	0.433594120857327	0.797843865729687
Merged-chr4-8857649-3	chr4	8857122	8858122	+	919.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 31 of 36)	intron (NM_001355382, intron 31 of 36)	106298.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.99337934152344	3.03430316745177	3.17312849436717	3.77872306190885	3.58359232047365	3.88860401422713	2.90323548008627	2.04081669528329e-05	0.000742835851186056
Merged-chr9-122861023-1	chr9	122860523	122861523	+	781.0	f0_c57.idr	intron (NM_001359935, intron 2 of 6)	intron (NM_001359935, intron 2 of 6)	4983.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	2.81076786905779	2.66327086201861	2.90065416225322	3.25311560525022	3.04544138976684	3.21092927071437	1.8697449170486	0.00963586046062908	0.0979812632540663
Merged-chr12-85599706-4	chr12	85599199	85600199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205053)	promoter-TSS (NM_001205053)	283.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.74050060957827	7.40993923453355	7.49561758302548	7.70741955787483	7.51826905768786	7.18667289433233	-0.0918430018011194	0.724103322984643	0.92918571470947
Merged-chr14-73509272-3	chr14	73508789	73509789	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-760.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	3.07669346764154	3.3763720037996	3.46930272960314	3.44497767022301	3.29969968949442	3.32097069549818	0.166581610514299	0.791491499094457	0.949748707968383
Merged-chr14-63443622-5	chr14	63443149	63444149	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	7255.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	7.09804756429488	7.32248493795972	7.31414468600916	6.92701876094414	7.35456298957199	6.93077077715062	-0.223245335157627	0.40193381272538	0.777823507457637
Merged-chr11-46834008-1	chr11	46833508	46834508	+	1000.0	f1_balb.idr	intron (NM_178759, intron 5 of 8)	B4A|SINE|B4	23209.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.37560532747359	6.21107172759297	6.5954861400467	6.60793325515058	6.50564794262658	6.60540772446643	0.287971461091401	0.295830186334325	0.692708934886082
Merged-chr5-124554683-2	chr5	124554183	124555183	+	560.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026409, exon 3 of 14)	exon (NM_026409, exon 3 of 14)	1819.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	2.29370457148727	2.18875236662299	2.43702742295654	2.31574294920611	2.08741195994428	2.38531697426579	-0.282921512026028	0.748206284874258	1
Merged-chr1-154031047-3	chr1	154030545	154031545	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131116.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.18817290466013	3.153711741162	3.09079782488426	2.95254693519815	2.88346728981196	3.10447196406844	-0.78132575621846	0.242722091031316	0.639856157348047
Merged-chr18-75924934-3	chr18	75924445	75925445	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	104767.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	2.91404707864099	2.87701517999097	2.91831025701159	3.4950973988666	3.49234882842642	3.3055560028929	2.47537093118519	0.000396475281605599	0.00872611001651606
Merged-chr10-7211090-2	chr10	7210590	7211590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	1147.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	5.91925443784793	5.74672033253402	5.66015304201876	5.81714459647953	5.63228218366742	5.61024689004673	-0.172776318046846	0.585459237436836	0.875018271489667
Merged-chr14-64901236-3	chr14	64900750	64901750	+	590.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 2 of 9)	intron (NM_177338, intron 2 of 9)	48607.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.49519356030627	3.16510002911313	3.26836768666124	3.54741470266158	3.90870383832181	3.73453735771934	1.53994001011347	0.0132143954729438	0.122117216627355
Merged-chr16-90187672-4	chr16	90187169	90188169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33073.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.20452571181083	3.09173352260663	3.19833361802789	3.26782751873394	2.97585056299698	3.43321127344618	0.28044096996179	0.671476469658359	0.910528012497292
Merged-chr12-102442036-2	chr12	102441536	102442536	+	977.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2223.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.12456886128591	5.82245795877836	5.9670036916995	6.3214517390424	6.55436815630658	6.1876126594173	0.666888951544964	0.0261032111761398	0.191728383865068
Merged-chr6-42343974-2	chr6	42343474	42344474	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5854.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.58728480543426	6.50051438010699	6.32192981658925	6.15441449492218	6.36182650493551	6.61360015224667	-0.15930412378312	0.580936363257724	0.873183274877594
Merged-chr15-57694582-4	chr15	57694090	57695090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-77.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	9.02855511044819	9.55567377233836	8.79481611176431	8.66401277763701	8.8539721303478	8.3275365681125	-0.731094270146573	0.00879967892978785	0.0921655874174933
Merged-chr11-98342764-4	chr11	98342268	98343268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	2.51678587788481	2.6928477420693	2.51639774118685	2.62623574898668	2.47173745338247	2.77821659432018	0.256287048426114	0.744859547828386	1
Merged-chr5-142747444-2	chr5	142746944	142747944	+	770.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122730, intron 16 of 27)	L1M5|LINE|L1	45343.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	2.05923083166254	1.92099458635093	2.15482913453451	1.93909515068912	1.75220300171286	1.96456355929549	-1.38128958453218	0.174172792518019	1
Merged-chr5-88543076-4	chr5	88542567	88543567	+	831.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11395.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	2.22318207977523	2.18479086801099	2.28863848896367	2.02911676171726	2.05725298466151	1.96407230107824	-1.68516462184709	0.0806497281410759	1
Merged-chr10-127644700-3	chr10	127644210	127645210	+	830.277771	f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	1724.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	5.8666981188149	5.42681312591566	6.00208455686408	6.07111867468121	6.13386933440086	5.82513883333759	0.432503145244749	0.198707243309856	0.587160238692855
Merged-chr4-135320771-2	chr4	135320271	135321271	+	592.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001130477, exon 18 of 18)	3' UTR (NM_001130477, exon 18 of 18)	32443.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	2.00813780044728	2.01408905189667	2.21728155533802	1.88768312947725	1.9124030162278	2.16435457817493	-0.707152700225256	0.460583122921581	1
Merged-chr2-25257606-2	chr2	25257106	25258106	+	778.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	2167.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	4.26610991804837	4.2224965316717	4.0971653292321	4.49836456083222	4.37598347622392	4.0647364277638	0.353203125124263	0.458426267717277	0.812981239724864
Merged-chr10-36974489-4	chr10	36973994	36974994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008229)	promoter-TSS (NM_008229)	-50.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	7.45552918909254	7.60236922295646	7.31729677158665	7.49077062134565	7.36113007656971	7.28157556923223	-0.127463157459967	0.589226787031838	0.876775022717594
Merged-chr2-170319360-4	chr2	170318877	170319877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36984.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.25885090676515	5.94993564234368	6.16768810782718	6.20442341261417	6.27512035674428	5.82456631161231	-0.00205446578622338	0.994733217151678	0.998961028701257
Merged-chr17-25920042-4	chr17	25919546	25920546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139154)	promoter-TSS (NM_139154)	-332.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	6.18484223462299	6.05526079551608	6.22705698211217	6.46804140796363	6.09503498985735	6.183643985366	0.174529534801198	0.552198449646376	0.861546661145201
Merged-chr7-145272223-2	chr7	145271801	145272801	+	787.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132642, exon 7 of 24)	non-coding (NR_132642, exon 7 of 24)	11710.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.89371598954274	3.00614677789836	2.81492572360652	3.14951702323575	2.96942323712663	3.41001703559727	1.22012765120234	0.0863424927366185	0.389228851209695
Merged-chr16-35754108-4	chr16	35753607	35754607	+	622.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	15249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	4.48260024430584	4.41261923617183	4.64647176133022	4.49462903667395	4.26694961976743	5.01753265669682	0.259365861186543	0.586603376967758	0.875615538765309
Merged-chr13-20090603-4	chr13	20090054	20091054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080288)	promoter-TSS (NM_080288)	47.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.96057877240897	8.0528510955219	7.88777517434902	7.76845487719043	7.84992749841817	7.94400324749578	-0.168715466094935	0.432575775426121	0.797386699146392
Merged-chr14-41013343-2	chr14	41012843	41013843	+	684.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316735, intron 1 of 5)	intron (NM_001316735, intron 1 of 5)	490.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	4.39012662140806	4.53293603024311	4.35601654736872	4.4749099780885	4.5177706081705	4.28499554019949	0.0114680249456408	0.979257458225133	0.995177657748265
Merged-chr13-58688427-4	chr13	58687940	58688940	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73871.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	4.96655975744363	4.68176700346035	5.68559219090085	4.99446637332627	5.03246183061168	5.31510810774542	-0.11698894742548	0.798240371806261	0.951930937621884
Merged-chr5-29258542-4	chr5	29258056	29259056	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 11 of 16)	intron (NM_020295, intron 11 of 16)	62563.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	3.56645567316665	3.55242328656829	3.85176466853147	3.62940381479993	3.37873298791351	3.51636940799138	-0.524453291399085	0.365143993505181	0.750338480639737
Merged-chr7-118798384-4	chr7	118797839	118798839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	RSINE1|SINE|B4	57274.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	7.65922519161315	7.83313345746496	7.28310156595043	7.4274851737423	7.63181890603988	7.485752384417	-0.146540761058909	0.566211684294689	0.867257533499542
Merged-chr2-104996515-3	chr2	104996022	104997022	+	801.477783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177600, intron 17 of 17)	intron (NM_177600, intron 17 of 17)	20505.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	3.14856835577163	2.95338039932706	3.24122826957652	2.93914830777878	3.02333688265821	2.96700673645802	-0.620038392040457	0.360226854360931	0.746468721585269
Merged-chr17-71662791-4	chr17	71662312	71663312	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10449.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	2.72214075098022	2.61662613603951	2.48941723670295	2.79322056079653	2.5110180415336	2.75947719925064	0.409247933448579	0.603345718733062	1
Merged-chr3-137947733-4	chr3	137947253	137948253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	29198.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	6.66093670783372	6.76793583588598	6.78925499729836	6.88814049999637	6.82705466270037	6.97470519349287	0.241792194632408	0.329778212326527	0.721504110160967
Merged-chr4-86689513-4	chr4	86689003	86690003	+	793.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19444.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.60187677983629	7.84936891001614	7.21085277670065	6.46828215217301	6.38822743725709	6.75732217778391	-1.59718211629933	1.85181187238933e-08	1.58198729237958e-06
Merged-chr18-23883153-2	chr18	23882653	23883653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	MLT1A0|LTR|ERVL-MaLR	-71535.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.7839656140911	6.77029787101787	6.96549856669937	6.44791690005433	6.58112512149858	6.28370064677606	-0.607209023334821	0.0236924518730575	0.180547809822636
Merged-chr4-62329109-3	chr4	62328605	62329605	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 13 of 27)	intron (NM_001355385, intron 13 of 27)	31491.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	7.00700382150407	7.32359409318928	6.90755664176292	7.30357497692656	7.0330072343098	6.98035315750593	0.0238042125676278	0.928855542522563	0.983906798062857
Merged-chr8-70544280-4	chr8	70543780	70544780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4605.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	7.97296184191055	8.04256545601333	7.70711435473489	7.54536600597858	7.84559394656562	7.59396183888016	-0.354245490796297	0.137736248232844	0.496124604946274
Merged-chr7-99090725-4	chr7	99090227	99091227	+	668.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	50417.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.09898272870811	5.89943182150329	5.93442960308171	6.05946788358735	6.19045147559095	5.73586630321245	0.0704839742863548	0.821512826238438	0.958023303204974
Merged-chr12-110706396-4	chr12	110705891	110706891	+	826.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-9996.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	7.19396997821067	7.39634207926025	6.86271090256392	7.25685927319344	7.11779420812914	6.9660746752981	-0.0864123358396786	0.747764984998786	0.93673826250006
Merged-chr14-33160487-2	chr14	33159987	33160987	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	24579.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.08888495917006	3.16390121191796	3.24584258067568	3.42519790583566	3.12550691836463	3.48035813846726	0.743402702772092	0.24504776221311	0.642381314494918
Merged-chr5-108669238-4	chr5	108668747	108669747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174870)	TTS (NM_174870)	5549.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	8.55110403428388	9.0983186518721	8.54562968711007	8.6607138448021	8.84259323654613	8.30629819233659	-0.187892672109052	0.482914107941215	0.825873702536581
Merged-chr2-11571028-2	chr2	11570528	11571528	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17099.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	2.27846535496444	2.2482396090598	2.49601979082602	2.2754624480336	2.38453365950438	2.44528907149172	0.185587263951236	0.824675416577282	1
Merged-chr7-90199843-2	chr7	90199339	90200339	+	940.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 19 of 19)	RMER19B|LTR|ERVK	65593.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	3.14825420482704	3.00472747992628	3.40569069452187	3.08478730867503	2.85940544134593	3.21065536302075	-0.599614339514745	0.384962623553758	0.766074969021339
Merged-chr5-105109825-2	chr5	105109325	105110325	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172777, intron 1 of 10)	intron (NM_172777, intron 1 of 10)	467.0	NR_153378	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	5.92869289582752	6.11547295240409	5.95899722653574	6.26652095198224	6.46186464633534	6.13611121795718	0.503620688956323	0.0855293732141927	0.387283853200182
Merged-chr17-69384030-11	chr17	69383533	69384533	+	999.4545289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009547, exon 1 of 3)	5' UTR (NM_009547, exon 1 of 3)	229.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	7.17895200429938	7.17692499930219	7.28827971882129	7.26788369687645	7.00199970201896	6.95613247491001	-0.19215931914928	0.433764232095752	0.797967674446634
Merged-chr3-69041526-1	chr3	69041026	69042026	+	544.0	f1_c57bl6.idr	intron (NM_025863, intron 2 of 2)	intron (NM_025863, intron 2 of 2)	3216.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	2.98215159500745	3.3001845541531	2.94161718609231	3.07548638835271	3.1358938585807	3.19689597033097	0.190659565466574	0.779300893772438	0.945710994231145
Merged-chr2-160058345-4	chr2	160057845	160058845	+	931.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	41692.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.11061491152383	5.89517782155975	5.98993351832268	5.84953263068727	5.85555670516553	5.75520903618319	-0.311732144161495	0.298140954020148	0.694971775608148
Merged-chr4-48043429-4	chr4	48042853	48043853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1952.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	8.63623254820978	8.81850658547238	8.21645388880295	8.59707556941681	8.77619783206518	8.27857772859181	-0.0209292423154691	0.936034759213658	0.986014061025137
Merged-chr11-118449250-4	chr11	118448717	118449717	+	875.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	5683.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	4.46661643891983	4.50428540094734	4.25329023459214	4.48517277726659	4.3745302945679	4.84660425351525	0.380575724790734	0.404795572392898	0.779791650050306
Merged-chr11-119355471-4	chr11	119354978	119355978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	32.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	7.91632468909856	8.04673814809678	7.49612325243634	8.05811210885796	8.18927301727921	7.76930117310971	0.247583358963784	0.3423397432312	0.731283521951228
Merged-chr14-75136857-4	chr14	75136356	75137356	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	431.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.34575411963671	5.36412231740137	5.27588103128857	5.27955788190048	5.12183307218055	5.24309247276684	-0.24279444468884	0.481435850240121	0.825079730294173
Merged-chr6-145129656-1	chr6	145129156	145130156	+	604.0	f0_balb.idr	intron (NM_008511, intron 1 of 18)	B4|SINE|B4	7917.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.38896329461112	3.27662128752398	3.55977635550501	3.5315506496177	3.58292657977239	3.35427147851373	0.3441057076398	0.564134562830766	0.866201054824694
Merged-chr2-91196918-4	chr2	91196407	91197407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	8.08636067096632	8.01111692434215	7.85196888767233	7.79269660301087	8.02797489484669	7.7634849911759	-0.167871596244884	0.457446276966398	0.812284129261024
Merged-chr11-30026095-4	chr11	30025574	30026574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146016)	promoter-TSS (NM_146016)	-41.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	6.606212307116	6.6635101023165	6.82638429977697	6.8681804280592	6.94310771774574	6.66689330099217	0.225255003335491	0.384827947336011	0.765939128677896
Merged-chr3-69674374-4	chr3	69673889	69674889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47666.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.13069674596163	4.75425931704765	5.17727829447387	5.4202174396819	5.46963687552801	5.30570719094963	0.771392558277245	0.0373335694533022	0.238517479044101
Merged-chr10-93919731-3	chr10	93919270	93920270	+	658.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28568.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	2.69685656842647	2.52860620170732	2.53066755964541	2.72649050764958	2.48519511059386	2.73266940653461	0.33331580649119	0.669393888712455	1
Merged-chr6-113650288-4	chr6	113649778	113650778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11811.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.35851699618545	6.22534234817825	6.6176992491792	6.32095814282901	6.0635933236228	6.27301893393661	-0.303417060068638	0.299682775719853	0.696380819987085
Merged-chr11-6490311-4	chr11	6489786	6490786	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14210.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	2.5124894211048	2.54332766537726	2.70517729303158	2.57704932188096	2.46638809867248	2.7778649726561	0.12293325983779	0.874696850660583	1
Merged-chr13-81109111-3	chr13	81108611	81109611	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145037.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.42930242974528	6.76958119794215	6.56109624891944	6.25987768903986	6.66082425731806	6.19271612078094	-0.312466932994284	0.299106109146516	0.695927450710144
Merged-chr12-99994628-3	chr12	99994125	99995125	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	30126.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.71181067424161	6.25141142107188	6.31476048497979	5.95707453070186	5.68491420552042	5.3987594767184	-1.26206309793211	0.000206859832239486	0.00515495445372363
Merged-chr10-116512682-3	chr10	116512181	116513181	+	815.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	15268.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	3.53962069304964	3.83124334148324	3.31799068772826	3.51571703193485	3.37847020461825	3.92027060254285	0.121114053502391	0.849656110646948	0.964686793473289
Merged-chr13-59585213-4	chr13	59584724	59585724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045633)	promoter-TSS (NR_045633)	-1.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	5.37354623247063	5.35070725490934	5.42906326075758	5.7879783770464	5.64219155264931	5.08226685506964	0.321850194657409	0.385758190335431	0.76666449726431
Merged-chr8-110619891-4	chr8	110619390	110620390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	MER3|DNA|hAT-Charlie	1323.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	6.48854373475168	6.81803872358644	6.62709716764524	6.86008122582112	7.02887090126816	6.03657533744417	0.110002406249771	0.751332505096935	0.937835477301438
Merged-chr3-130796691-4	chr3	130796192	130797192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66294.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	4.83988655304952	4.63274166546215	4.76687755062274	4.21044865603766	4.24840198921434	4.38954457105724	-1.18172066048539	0.00645506006326753	0.0736881105425112
Merged-chr12-85649128-2	chr12	85648628	85649628	+	867.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37592.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	3.98623396485971	3.88652457275026	3.90711479696364	3.70237060647524	3.67022910590855	3.92741497159945	-0.528056873871705	0.311974486183312	0.706842016238012
Merged-chr15-41685753-4	chr15	41685234	41686234	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-103261.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.84150406146249	3.07510926390042	2.906463653793	2.8205354426318	2.65951806653341	2.7288121177527	-1.0889890326406	0.137723782881095	0.496113274426174
Merged-chr19-41402768-4	chr19	41402265	41403265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17695.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.22231112518859	7.06380779847192	7.37721643738922	7.29877621057576	7.45942486845536	7.25704411885858	0.187146661130513	0.440173066914037	0.80167050915541
Merged-chr14-79497710-2	chr14	79497210	79498210	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ID_B1|SINE|B4	-16442.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	3.77970592981995	3.95092541016166	3.90360537779135	4.03946403222517	4.17641761197397	4.0225350179333	0.62507103732774	0.209826001175528	0.601730205266701
Merged-chr1-36072110-4	chr1	36071618	36072618	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3718.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.35287871534464	7.16851491255923	6.95987437279423	7.10919220230168	7.1688430132928	6.72120853287132	-0.228989117875067	0.399436710055455	0.775842801426137
Merged-chr11-83020867-4	chr11	83020385	83021385	+	963.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167743)	promoter-TSS (NM_001167743)	-75.0	NM_181545	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	6.98987011321442	7.23968926478294	6.84474486878585	7.21286021582518	7.43111040385922	7.03472268934691	0.303295921777432	0.253769477675779	0.651117231535132
Merged-chr15-83016209-3	chr15	83015708	83016708	+	957.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 2 of 5)	intron (NM_028728, intron 2 of 5)	6930.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	3.17167964063547	3.20438596927013	3.3227222193038	4.10470156765088	3.94607075038584	3.84864553550528	2.85655725926089	5.36772555481355e-06	0.000235444231926688
Merged-chr11-121790821-2	chr11	121790321	121791321	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39397.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	4.1433003699832	4.17165600570184	4.47832070751612	4.35822240363522	3.97161712883939	4.29682661844616	-0.140907920031144	0.7733140319114	0.944067559391607
Merged-chr9-44767328-1	chr9	44766828	44767828	+	1000.0	f0_balb.idr	intron (NM_145985, intron 1 of 9)	CpG	480.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	8.45872575743012	8.60744379708178	8.21304512437798	8.29702129137593	8.19434865591424	8.30692543514375	-0.247275676660363	0.261682826395123	0.659457534066706
Merged-chr2-120481705-4	chr2	120481204	120482204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109761, intron 2 of 20)	intron (NM_001109761, intron 2 of 20)	4795.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	4.02274406479825	3.94404335332926	3.92238358680042	3.91103917551913	3.72645026536226	4.08604146548579	-0.183754652103697	0.720874085266495	0.928324696220711
Merged-chr1-118388243-4	chr1	118387763	118388763	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-795.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	7.22939041096937	7.48892309413804	7.39038454255294	7.29543501978607	7.76036080489825	7.47887835582746	0.232524319614799	0.360955099647441	0.746938274913623
Merged-chr3-15243898-7	chr3	15243396	15244396	+	999.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88406.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.90723550367851	4.96106099746325	4.42541420581834	4.51259863793775	4.31429541413777	4.08438479792407	-1.1588269214938	0.0152869714569846	0.134375401644624
Merged-chr11-11903643-4	chr11	11903135	11904135	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5491.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	3.11352920854597	3.37499439587533	3.26775675592515	3.65974905472836	3.62895737894035	3.56868825068703	1.3839424405594	0.0232788194886631	0.178580428636446
Merged-chr16-85286602-3	chr16	85286116	85287116	+	823.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112909.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	2.64127085181529	2.52461074345069	2.83883025720355	3.07674458716107	3.34957984690677	3.53040454687656	3.82236941833417	3.53992959393973e-05	0.00118293358093388
Merged-chr2-157501547-4	chr2	157501040	157502040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58538.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	5.43964083185491	5.25443574620676	5.33798028109828	5.06795211652435	4.86537527855207	4.71779325294248	-0.938193669912056	0.0125627546940194	0.11806208409532
Merged-chr17-26560738-2	chr17	26560238	26561238	+	787.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-774.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.29460280985052	5.13066464645405	5.15039843406145	5.25362355073339	5.42175363910066	5.07391249697822	0.149472753968227	0.678878105220993	0.913553914280182
Merged-chr4-136881156-2	chr4	136880656	136881656	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 2 of 2)	intron (NM_009777, intron 2 of 2)	5021.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	3.86679701027796	4.30266419402507	4.58769312245803	4.13758827026657	3.98452765224305	4.50448702320619	-0.158954137935817	0.768067085389361	0.942796200467315
Merged-chr1-180421777-2	chr1	180421277	180422277	+	818.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081175, exon 8 of 8)	exon (NM_001081175, exon 8 of 8)	61727.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	3.29632114594178	3.13212703925721	3.02911742873763	3.14061462928066	2.93639459928397	3.27763586608583	-0.180339702925229	0.788548376003401	0.94895503373255
Merged-chr17-71264952-4	chr17	71264422	71265422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	46089.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.70577233634604	7.89002809605646	7.67100868651078	6.0684141659723	6.14062283023871	6.20794031894404	-2.51195706247298	4.45778374947358e-23	5.37569956849561e-20
Merged-chr4-34643947-2	chr4	34643447	34644447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28990.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	5.23027308140044	5.10717351505929	4.8186879956006	5.40024770913218	5.433661516566	5.04618259638174	0.48842239168271	0.203521740365193	0.593531367317643
Merged-chr4-140984458-2	chr4	140983958	140984958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2415.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	6.29295334924612	6.22196055079286	6.27461651842599	5.9005958020349	6.38290716836083	6.25509082216306	-0.102838501935582	0.731159276213032	0.931320540641251
Merged-chr1-144243171-2	chr1	144242671	144243671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5933.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.41554602684753	4.4589328450279	4.4615380566235	3.94490173971877	4.16553934361969	4.17806317172523	-0.933788101943073	0.0446459210439683	0.26633910225312
Merged-chr10-55096427-3	chr10	55095963	55096963	+	867.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010454.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	3.2608926604755	3.37395914136381	3.28481784252266	3.17368302068136	3.0620005409507	3.24267262576223	-0.643490179693697	0.306027891425574	0.7020655990236
Merged-chr5-30916266-4	chr5	30915746	30916746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 3 of 7)	intron (NM_133918, intron 3 of 7)	2460.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	5.49949796677093	5.13574054814711	5.86939394864123	5.70502422915962	5.2307353078716	5.66961215066589	0.0384707032378586	0.922074328590671	0.982542868764899
Merged-chr2-52993408-4	chr2	52992918	52993918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	135550.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.79091632789577	5.83789924656873	5.77826924489874	5.76030965567053	5.54935904993938	5.53913669097991	-0.334817625724777	0.285126154051762	0.682707750175219
Merged-chr14-54448118-3	chr14	54447618	54448618	+	918.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16029.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	2.36338225003766	2.14445867574581	2.31474701749562	2.64754844561301	2.22099338547196	2.5229679450426	1.26244797469545	0.157848501127736	1
Merged-chr6-86487973-4	chr6	86487458	86488458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040292, exon 1 of 2)	non-coding (NR_040292, exon 1 of 2)	269.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	7.35296571103833	7.67078948121538	7.70197754306271	7.57702162791165	7.89181356834063	7.61355562591438	0.182181932979541	0.460014261954712	0.814124270646751
Merged-chr15-79756556-3	chr15	79756055	79757055	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	13857.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	4.31997814485157	4.25949833608562	4.85701791377138	4.40130835458056	4.47349578662595	4.6769145837734	0.0580271891338674	0.902118135407383	0.977397387787646
Merged-chr9-65195760-4	chr9	65195256	65196256	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18934.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	6.52731786775843	6.58041175350768	6.61162610790726	6.20584787055676	6.41580904154036	6.33120828773671	-0.401753057804955	0.133658312685528	0.488919017098404
Merged-chr17-83395543-4	chr17	83395049	83396049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	MTEa|LTR|ERVL-MaLR	44618.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	5.28288062037423	5.2356884821951	4.93182630807464	5.23480007777257	5.37879810297526	5.28185235406558	0.266321556410378	0.461804890407983	0.815107818354545
Merged-chr9-24514790-2	chr9	24514290	24515290	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11650.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.22518783132919	3.32539603277465	3.55397256607006	3.62989517010291	3.50215420981356	3.40680873812027	0.566806834770013	0.345508799835572	0.733882070166902
Merged-chr5-64764621-3	chr5	64764116	64765116	+	743.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38907.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	2.81413002961379	2.63308496462617	3.05237928651002	2.693013354039	2.55576284801225	3.06923681824012	-0.267149087488616	0.735146052947895	0.932617455907478
Merged-chr4-148677166-2	chr4	148676666	148677666	+	690.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33849.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.89123556917505	3.68156150322725	4.05381890734078	4.42018151178359	4.42288162757239	4.2639336085614	1.44624626320683	0.00350075684655038	0.0471726276417432
Merged-chr9-113782818-4	chr9	113782319	113783319	+	930.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	L1MB8|LINE|L1	-10511.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.94086093514309	5.89058003371827	5.51795252718891	5.49494932306785	5.71027796632448	5.48978543427636	-0.421765412296903	0.208192874603558	0.599041414336639
Merged-chr3-103026383-3	chr3	103025891	103026891	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	B2_Mm2|SINE|B2	5845.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	3.86769206042833	3.95941185966903	4.05845629391464	4.197427338268	4.04782960763966	3.82334804156728	0.231788168287369	0.647859484720602	0.901546844242429
Merged-chr10-80623735-4	chr10	80623246	80624246	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	966.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	7.227453346267	6.82161861612348	6.72975245417347	7.24557047834264	7.3443468435759	7.09766358762675	0.4289392518021	0.113376022950247	0.449785072835135
Merged-chr16-57572322-2	chr16	57571822	57572822	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	23080.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.00491655638591	4.87151493998751	4.76521205840554	4.86662265975124	5.10899175126953	4.61991596354431	0.0149918196588703	0.970907391180057	0.993599367110128
Merged-chr7-4238136-3	chr7	4237638	4238638	+	954.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081239, exon 3 of 6)	exon (NM_001081239, exon 3 of 6)	384.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	8.72902781941996	8.88127274499248	8.63304645210984	8.78543114378872	9.17963978328546	8.76077805824954	0.23934495569619	0.294173428759817	0.690813158926617
Merged-chr2-30772092-4	chr2	30771630	30772630	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29607.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	6.04633959872381	5.71275797105008	5.93256309632525	5.50851045925219	5.52599439282805	5.72819478250359	-0.58767385225597	0.0682028650756444	0.341659453091987
Merged-chr7-142340748-4	chr7	142340240	142341240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31519.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	6.41619881613469	6.08190378926571	6.27930589403273	6.87766416942001	7.11285150193591	6.95441156258713	1.14694790171347	2.43285890544707e-05	0.000863255112172453
Merged-chr13-37290904-4	chr13	37290392	37291392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54453.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.67072704452279	6.05742633445634	5.54515818789916	5.33490654482736	5.37267447973281	5.36308940382445	-0.809063625159995	0.0194344706363004	0.158369682582586
Merged-chr17-87550844-4	chr17	87550331	87551331	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85148.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.25284296544964	4.10872285718559	4.0939924673386	3.8280963729742	3.55373617050019	4.02168052445287	-1.08436209888444	0.0415163373474268	0.254793582977186
Merged-chr14-44990656-3	chr14	44990140	44991140	+	674.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	2529.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.14718712769223	3.97274256241499	4.45781721865753	4.5196475690629	4.48783974909878	4.35535753082658	0.700228356916201	0.137834413991049	0.496256190057178
Merged-chr13-37740818-2	chr13	37740318	37741318	+	645.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85220.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.1969437257013	3.9359101239343	3.88660572776456	3.92478819447222	3.88298422268384	3.90530872134021	-0.350560028909238	0.490792644093565	0.830181469396006
Merged-chr17-65726071-2	chr17	65725571	65726571	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	46681.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.16360201116744	6.39379804786333	6.27518651633482	6.26587164249603	6.72696474339378	6.3353933049106	0.30943976587962	0.298677028080192	0.695427199902635
Merged-chr13-42328739-4	chr13	42328241	42329241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27265.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.94442164712861	4.67438113814043	4.71895602943769	5.14328821089954	5.00352794113251	5.11698322602018	0.648965166920703	0.09300088078871	0.406344113036494
Merged-chr16-17492369-4	chr16	17491859	17492859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291070, intron 1 of 19)	intron (NM_001291070, intron 1 of 19)	438.0	NM_001291070	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	2.67326561721667	2.63449383672499	2.89463907985671	2.60607388746971	2.80166839599165	2.90882729220281	0.219484448926996	0.769502942497008	0.943125565788486
Merged-chr12-87386090-4	chr12	87385646	87386646	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	2209.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.70753282579516	3.839608053207	4.01990882852072	3.93677684002522	3.79137642322547	3.94735154201158	0.109089346554235	0.833920845391197	0.961129638343139
Merged-chr6-8412978-4	chr6	8412470	8413470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	96191.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	6.39761854426794	6.54736481327161	5.99836257482778	5.759274658297	5.71165984419995	5.4358492679435	-1.20095460103076	0.000268117186108507	0.00635960513731945
Merged-chr14-51098484-3	chr14	51097984	51098984	+	810.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_201239, intron 1 of 1)	intron (NM_201239, intron 1 of 1)	2484.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	2.6845468017092	2.60704761392299	2.70214822138531	2.47347536416038	2.38733626998686	2.31935158167502	-1.68020555063129	0.0462396304819341	1
Merged-chr12-102460292-2	chr12	102459797	102460797	+	985.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8837.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.80324910199469	3.82671473571548	3.93217917752411	4.55390042339265	4.5561191653765	4.38757599028359	1.87003621983476	9.76752940314411e-05	0.00277763700128782
Merged-chr14-70769720-4	chr14	70769203	70770203	+	863.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3075.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	3.05104571915757	2.6836786120912	3.0278757955951	2.87771546881205	2.67399972073803	3.15557274276714	-0.0800979232063584	0.915941381771954	0.981201223155309
Merged-chr8-53607274-4	chr8	53606807	53607807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 5 of 9)	intron (NM_146208, intron 5 of 9)	31758.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	2.35194975109664	2.39324858607855	2.48721133670987	2.48786385112463	2.59223604760785	2.62361942679094	0.980177900241022	0.218710999306883	1
Merged-chr13-30714804-4	chr13	30714326	30715326	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34407.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.62271204526686	3.88635426268359	4.14377401925142	3.50469073592965	3.53422843357953	3.80718272375602	-0.9207975529072	0.109686383379653	0.442618069265478
Merged-chr18-83830127-4	chr18	83829621	83830621	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256441.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	3.68438985271509	3.33048613790064	3.47745282719981	3.42774308939852	3.21159297449598	3.32255550283229	-0.714137267817295	0.245795748777743	0.642821080898342
Merged-chr15-86205018-2	chr15	86204518	86205518	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-9441.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.93878897598242	5.82467030424991	6.26262449498244	6.03633322688896	6.13505690870998	6.18523490347224	0.188593151333145	0.535383747074047	0.853512105348072
Merged-chr10-81136342-6	chr10	81135777	81136777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010731)	promoter-TSS (NM_010731)	6.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	8.1352523745403	8.04638549194619	8.21428266717244	8.03072017096269	8.07563250356589	8.33646829265874	0.0267531700883297	0.903111964851409	0.977756599430303
Merged-chr13-94382683-2	chr13	94382179	94383179	+	852.5	f0_balb.idr|f0_c57.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23719.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	6.83960026833338	6.89969598231894	6.75006700923094	7.11285924150115	7.24811238199481	6.90118378939166	0.411194539088614	0.104008367327196	0.430071471876029
Merged-chr19-37048781-3	chr19	37048267	37049267	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	122688.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	5.35403498988813	5.57288582222416	5.55828309983409	7.61706326584077	7.94967907834988	7.47297822585451	3.58075028724315	5.72423956599164e-33	6.80432179724332e-29
Merged-chr11-21009242-3	chr11	21008733	21009733	+	853.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82091.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.10444641654185	6.40167702924297	6.47576457461457	6.51779577432359	6.65467841404353	6.46348854568938	0.36110871883262	0.19882519610713	0.587343866831168
Merged-chr2-70989500-2	chr2	70989000	70990000	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28874.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.03832053729204	5.99678533808425	5.94000228412153	5.88222559705667	6.05670140402758	5.773996459709	-0.129557125820864	0.665919914859554	0.907947624137969
Merged-chr5-92440867-2	chr5	92440367	92441367	+	851.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007644)	TTS (NM_007644)	-5668.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	5.83518096083712	5.45633150228032	5.60882441228008	6.01891685100961	5.87556718126718	5.64342243199032	0.391645573669238	0.237693381015682	0.634225619096145
Merged-chr2-76691004-4	chr2	76690507	76691507	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15692.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	3.78854649291271	4.01205397315128	4.09443682506459	3.78629462102061	3.68823970420344	4.11760831281431	-0.310660788468616	0.562088273792007	0.86560636450104
Merged-chr15-50855178-4	chr15	50854671	50855671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	33878.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.5337590170149	5.28679445778163	5.2261537296182	5.51088154140183	5.33616327106784	5.25717559274826	0.0247961499817953	0.943662954913718	0.987453245208137
Merged-chr6-136553955-4	chr6	136553462	136554462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	35111.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.3307537410798	6.73075960736971	6.34240146568167	6.44510549371841	7.24823580505952	6.31968257036204	0.426284469288016	0.234454374805194	0.630587310301275
Merged-chr19-40630270-4	chr19	40629773	40630773	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1M4a1|LINE|L1	17907.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.8411756423717	8.08680618065259	7.79850532923135	7.64743171208532	7.93901749553872	7.51691376914527	-0.281430118640418	0.251131033259654	0.648705793352455
Merged-chr12-34702777-2	chr12	34702271	34703271	+	592.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-173882.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.59288636918504	4.58192980438195	4.89612606802299	4.405983867339	3.95974262953827	4.60434803875098	-0.88267040905523	0.0691490070166912	0.344038279792654
Merged-chr3-54611761-4	chr3	54611256	54612256	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81059.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	3.08806335833825	3.07388736208454	3.24620452598601	3.62400099224535	3.12489073957014	3.37575245916344	1.03766637704857	0.113640085303066	0.450295929229846
Merged-chr3-41564806-5	chr3	41564271	41565271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130186)	promoter-TSS (NM_001130186)	-109.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	6.65510118232239	6.65675552732059	6.08169005596928	6.34296340994018	6.26798899702434	6.18918828140986	-0.383823632750906	0.207842426856132	0.59868364609575
Merged-chr4-149791725-4	chr4	149791246	149792246	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	8.52202457714284	8.73496350619371	8.48651491576596	8.48539611313931	8.9413695597148	8.38013320163668	0.0634158661664651	0.7967072817983	0.951484355174064
Merged-chr13-10107052-4	chr13	10106527	10107527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	253776.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	4.77373765713501	4.70416747736261	4.54914765956099	4.62842055731734	4.44862780188395	4.44071497264853	-0.426794854924207	0.310521197842739	0.705856787750202
Merged-chr7-16174953-2	chr7	16174453	16175453	+	878.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-442.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	5.17107733914859	5.3585949740045	5.17205701733792	5.51288150662154	5.24945801397731	5.09585471845126	0.12321914565032	0.734426309727214	0.932426757820458
Merged-chr19-4087369-2	chr19	4086869	4087869	+	750.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160253)	TTS (NM_001160253)	3850.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	2.15445280479813	2.12501413195667	2.02680724042164	2.34022340981191	2.15137463954459	2.43871571772004	1.46877025217062	0.112751391417872	1
Merged-chr9-13761145-3	chr9	13760639	13761639	+	780.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	ID_B1|SINE|B4	11958.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	3.7916605720529	3.54949501556393	3.74279418116915	3.84210529054071	3.4505819443705	3.76175433628077	-0.0236832612523497	0.966797678479022	0.992357576102835
Merged-chr14-31494147-4	chr14	31493658	31494658	+	876.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	600.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	7.52232263252033	7.54981179918524	6.88474299939657	7.25626715286551	7.52530654539598	6.66966660893084	-0.224590098979851	0.500053720609695	0.834921806675451
Merged-chr17-34628292-3	chr17	34627779	34628779	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	0.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	6.05947383223882	5.82695465352203	6.30932302596418	6.16370250735982	5.776830015546	6.1348774194114	-0.071176749903514	0.82631937209169	0.959130347937145
Merged-chr5-43885214-4	chr5	43884727	43885727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	16418.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.0107812518527	6.93203432974334	6.90686458166932	6.83321573557856	6.93418080244841	6.56275170384611	-0.23847779277901	0.356590941385413	0.743348418397567
Merged-chr2-103485813-2	chr2	103485296	103486296	+	677.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-643.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	5.89416995809721	6.34941800351292	5.82735618609123	6.40541679944869	6.68679395986138	6.38873157058088	0.74315044753782	0.0193397047908079	0.157952312154844
Merged-chr8-117341378-2	chr8	117340878	117341878	+	945.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ORR1D1|LTR|ERVL-MaLR	-7792.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.21233920854688	6.10919195629188	6.56409629358332	6.54334655134499	6.35890873505632	6.4159489214673	0.234966330110966	0.419372702037916	0.788977038405131
Merged-chr7-46999141-4	chr7	46998607	46999607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 2 of 5)	intron (NM_175318, intron 2 of 5)	9307.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	4.9275746580797	4.7469529562763	4.86022063938343	4.57301560756611	4.97831219634083	4.96089728920193	0.0147296515957444	0.971105179347849	0.993718751783969
Merged-chr19-29368617-4	chr19	29368092	29369092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1154.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.65048497265736	6.71466547273356	6.54095573588351	7.14890013954081	7.40593977727561	7.02474729239675	0.873349738761312	0.000761553161733832	0.0146176044940135
Merged-chr18-82855827-4	chr18	82855325	82856325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-72.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	8.07287621406322	8.42104372343589	8.03009824601949	8.06897278616507	8.83550871254869	8.19263944424517	0.321797509595064	0.262205364016296	0.660046527994061
Merged-chr1-93071579-4	chr1	93071089	93072089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	10891.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	7.29503460754701	7.31057973700351	7.11439263722757	7.10360329686024	6.94876870988013	6.88177874051377	-0.399076034660367	0.10031969651638	0.422396584745216
Merged-chr14-55558737-2	chr14	55558237	55559237	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1292.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	5.2720968050427	5.33521395339999	5.0288276103397	5.14339955912818	5.43968682368297	5.33207063793597	0.17317164547383	0.632132850229952	0.895435008062156
Merged-chr6-123049934-4	chr6	123049475	123050475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190310)	promoter-TSS (NM_001190310)	13.0	NM_001190310	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	5.63031458535659	5.62465796432492	5.52479452745485	5.27175053124571	5.33431846268823	5.71949126300018	-0.291953610109292	0.394594703791165	0.772514857254462
Merged-chr10-34189574-2	chr10	34189074	34190074	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	17977.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.5358034022556	5.47299285355305	5.61534270083473	6.07786616705924	6.06090485435279	6.11198335124438	0.977899106379009	0.00116153243020702	0.0202363464096872
Merged-chr11-88970642-1	chr11	88970142	88971142	+	606.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1996.0	NR_003492	72381.0	Mm.288885	NR_003492	ENSMUSG00000081766	2210409E12Rik	AU021711|C76890	transcription elongation factor B (SIII), polypeptide 2 pseudogene	pseudo	2.71914996342984	2.85197293619682	2.96695758707932	3.35122322956361	3.39963242514002	3.59885544467021	2.94184741270612	9.62004618244153e-05	0.00274413713660814
Merged-chr15-59003863-4	chr15	59003371	59004371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70061.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	5.72664073356444	5.91949193954136	5.71619210937781	5.4999680859125	5.81568117790263	5.43044522150339	-0.341252778808216	0.306631812659974	0.702880028965702
Merged-chr7-27674622-4	chr7	27674162	27675162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290528)	promoter-TSS (NM_001290528)	1.0	NM_198417	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	5.76262931072917	5.6198107615185	5.77019087118493	5.93083356192171	5.542105296344	5.53048006232982	-0.0604906253967925	0.854926223360721	0.966038421653227
Merged-chr15-73645771-4	chr15	73645277	73646277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21033.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.92414036523226	7.11189498929967	6.98538572023674	6.89793112991378	6.66352814211869	6.78438302874837	-0.353260819108785	0.160259066295129	0.532965919658045
Merged-chr1-60016369-4	chr1	60015866	60016866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 3 of 10)	intron (NM_001357296, intron 3 of 10)	26756.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	6.47040138080784	6.53302698672214	6.34895185724285	6.16892592319992	6.35264437268185	6.22727095995711	-0.331871485233998	0.226433688044452	0.62138719831753
Merged-chr11-26637886-4	chr11	26637406	26638406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43986.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	5.9933252520961	5.66649142358855	5.35478487495373	6.41923565766603	6.48088397719822	6.22940182623984	1.14903573114594	0.000606686958179877	0.012246775452749
Merged-chr16-36642119-3	chr16	36641614	36642614	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23963.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.98757164908199	6.81298445152909	7.03058360366962	7.00016679671367	7.14508372894177	7.12646187345582	0.228698963463322	0.349120111662553	0.737168174466914
Merged-chr14-50896859-2	chr14	50896359	50897359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3604.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.38143696427605	4.21927924388396	4.23662932457753	4.08444074693915	4.35803430847191	4.2121960461752	-0.145845594023923	0.754872139535846	0.939123558849015
Merged-chr17-10358935-3	chr17	10358447	10359447	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34345.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	7.45245532464847	7.32058704406858	6.70048297473947	7.02786050473895	6.99600728857987	6.51876227460708	-0.50134737826401	0.112633928671028	0.448338447691312
Merged-chr3-20155668-4	chr3	20155181	20156181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013755)	promoter-TSS (NM_013755)	-565.0	NM_013755	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	4.01892712067312	4.24069197477477	3.91849255563866	3.84680726268607	4.0354959798936	3.93732539168812	-0.377962116204941	0.457118618480555	0.812004739475898
Merged-chr18-9451023-3	chr18	9450480	9451480	+	658.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-826.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.09230174016458	5.73745768732565	5.18756080307213	5.12724285417088	5.3055478454869	4.91850889763905	-0.490501812779564	0.230725432938039	0.626416175824539
Merged-chr8-84638806-3	chr8	84638321	84639321	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 46 of 47)	exon (NM_007578, exon 46 of 47)	24031.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.67023142100543	5.47977409697577	5.97537160153358	5.63768844668517	5.6350287489641	6.03556755493625	0.10863114426356	0.753581057791741	0.938563718495545
Merged-chr9-106367843-4	chr9	106367341	106368341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-791.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	6.90202234411521	7.1403743099248	7.10921461323333	7.28769761900136	7.48144993736531	7.06246795150784	0.367346186451568	0.151303383069474	0.518604873061656
Merged-chr14-77864279-4	chr14	77863767	77864767	+	932.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	10650.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	6.00780101632888	6.05726876108884	5.87608176525664	6.15636648006184	6.60802240386041	6.41231391104616	0.709474837553784	0.0179665210577152	0.15058000444907
Merged-chr19-32950409-4	chr19	32949900	32950900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192823.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.94512629656052	6.27722280832946	6.25672028920747	6.35293395437464	6.25766578643123	6.53396337079694	0.35490057302712	0.225669886601321	0.620676402041606
Merged-chr4-45795849-4	chr4	45795324	45796324	+	993.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	5.02176092250443	4.8315907423878	5.06449397260103	5.70205499975956	5.37902692945354	5.56220987564154	1.16968976992386	0.00116832097916924	0.020326315060898
Merged-chr6-97429931-4	chr6	97429421	97430421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MTD|LTR|ERVL-MaLR	29365.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.32769012851743	7.16813329358196	6.95506712915405	6.95365820832733	7.21077470433841	7.01324436739311	-0.146423967741971	0.567188035090694	0.8678346148326
Merged-chr16-92695611-4	chr16	92695124	92696124	+	853.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111021, exon 3 of 8)	exon (NM_001111021, exon 3 of 8)	1705.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.61178321035845	4.44998926864944	4.30880076807729	4.55379837303043	4.38675180170858	4.2331441757608	-0.170154201351009	0.706356920516237	0.922959194348248
Merged-chr2-157566802-4	chr2	157566309	157567309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016916)	promoter-TSS (NM_016916)	-448.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	8.9366525590891	9.10878697724969	8.66036193830877	8.88436968867601	9.23622184374585	8.5048852948948	-0.00190508912772218	0.994294546322909	0.998918571480046
Merged-chr11-98026125-2	chr11	98025625	98026625	+	643.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-585.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	7.03978196397567	7.18196065826595	6.92824177981314	7.12662392813852	7.36292468503535	7.01482666452415	0.18923778084928	0.455937049428769	0.81123938862117
Merged-chr16-65577871-2	chr16	65577371	65578371	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15174.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	2.96325605840323	3.26389938312877	3.06222312987146	3.36377343532995	3.09552056512152	3.31115492376916	0.640497640545609	0.335988287538227	0.726090328603253
Merged-chr11-110542095-3	chr11	110541591	110542591	+	989.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62751.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.265077234851	3.53162311714091	3.87247746398071	3.9516872417856	3.31662119350765	3.84182974359599	-0.599787885189382	0.352672749292875	0.740209160221368
Merged-chr7-19130683-2	chr7	19130183	19131183	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	10824.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	3.70741626377568	4.09627145395672	4.44533837749915	4.20577242986208	4.12942960317093	4.51078926642316	0.481858621678174	0.373655941734139	0.757529198534216
Merged-chr9-62868770-2	chr9	62868270	62869270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138304, exon 3 of 5)	exon (NM_138304, exon 3 of 5)	-6746.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	2.90807581124735	2.98412038892616	3.10668033232725	2.91096708024304	2.87078634502217	3.28258843211642	0.131620410361356	0.850689629926661	0.964981271430729
Merged-chr5-114924851-8	chr5	114924087	114925087	+	864.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	1347.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	7.18851678308934	7.12299674060924	7.01087270351739	7.59033479176228	7.45230253759199	6.95359926288097	0.382641068778496	0.159388488875184	0.531559013319692
Merged-chr1-34004540-1	chr1	34004040	34005040	+	613.0	f0_balb.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-7285.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	3.53524279555276	3.82943377467943	3.75021810695919	3.78238763495119	3.69835290636769	3.60713722975432	-0.0353398072046086	0.94890452001108	0.988169196639905
Merged-chr7-80229879-4	chr7	80229391	80230391	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291276, intron 1 of 4)	PB1D10|SINE|Alu	2914.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	5.36280611383781	4.88016569684825	5.11724122192101	5.08489673177906	5.16364467118798	5.00579010756853	-0.0948367282942135	0.805344828182235	0.953840812813326
Merged-chr7-114274453-2	chr7	114273958	114274958	+	724.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011965, exon 2 of 10)	exon (NM_011965, exon 2 of 10)	1658.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	3.44699878582373	3.55159669451269	3.58258464416645	3.72211997379235	3.84902531363114	3.54276199905688	0.670066642244358	0.234085443771449	0.63036877369004
Merged-chr12-80816619-4	chr12	80816118	80817118	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	26086.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.01076838657173	5.8280500599079	5.47545893916398	6.02380397799129	6.22071152254409	5.85835803379405	0.434354759823043	0.19221697272627	0.57920205203809
Merged-chr1-136140236-4	chr1	136139770	136140770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	8880.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	8.55215142690468	8.65758936314928	8.32575287912412	8.58168713558795	8.835215105844	8.49277704191766	0.174284543819755	0.439570129313474	0.801216871474848
Merged-chr19-4099268-4	chr19	4098775	4099775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	-723.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	6.19611657325223	6.02447727639593	6.0235584761952	5.96956129817545	6.1345775677787	6.12857177283497	-0.0118555641722658	0.967341774678095	0.992555129128888
Merged-chr19-42518322-2	chr19	42517844	42518844	+	750.625	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-461.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	5.9064603631912	6.22832304838928	6.27859027325526	6.06946291495346	6.23967668919045	6.13538610909051	0.0184530107239464	0.950573425533565	0.988444308820256
Merged-chr1-189654527-3	chr1	189654007	189655007	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 13 of 18)	exon (NM_001081363, exon 13 of 18)	33579.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.81441520616968	3.59534810676829	3.79062092073786	3.73898299761923	3.21640406058766	3.95417773352162	-0.218290110306428	0.729386698909298	0.930622521015005
Merged-chr10-39171885-4	chr10	39171391	39172391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8097.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	4.36008434074559	4.51006550594703	4.23106332784714	4.25441965231865	4.28830340345751	4.2044761741744	-0.337157379527714	0.459243473569992	0.813510456924322
Merged-chr3-81039035-2	chr3	81038535	81039535	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	2619.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.64956317741697	5.59588041104784	5.51850112456201	4.84387745035839	5.25729208567432	5.21541848959762	-0.925354578269229	0.0103413894295962	0.102830584567142
Merged-chr7-92666956-6	chr7	92666489	92667489	+	704.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	2923.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	3.8264798421669	3.97382801374964	4.07590554696932	3.92933092903653	3.97568978802105	4.31513749654722	0.347807165728116	0.494919338146073	0.832153667472614
Merged-chr15-93336401-4	chr15	93335914	93336914	+	932.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028315, exon 2 of 5)	non-coding (NR_028315, exon 2 of 5)	521.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	5.83283807095887	5.49662359043985	5.35811347284136	5.95733644595036	4.94563330727414	5.32435966944077	-0.183478001296502	0.67226367607511	0.910756996322765
Merged-chr14-30593895-4	chr14	30593411	30594411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16399.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.48218703846255	8.62696802410375	8.21008030235968	8.18020513834429	8.58466818759034	8.32332909248514	-0.108876335729922	0.649307523089121	0.902147045789438
Merged-chr19-5965422-3	chr19	5964944	5965944	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	4.31398547708542	4.3532479064909	4.45481571931483	4.24012224271604	4.82691292949635	4.47953712530603	0.44823704680002	0.336597864865712	0.726578163839891
Merged-chr17-78735820-2	chr17	78735357	78736357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	703.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	4.95775172136965	5.18750193593848	5.12990904165329	5.47776058130672	5.01545548477829	4.98035077827884	0.178934507960753	0.646018761934832	0.900853513374787
Merged-chr9-94692563-2	chr9	94692062	94693062	+	855.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22670.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	7.36045227590137	7.45158514751536	7.61382002165684	7.35120000816422	7.63643610427891	7.74024689264342	0.159911145983687	0.51063596758752	0.841016559272824
Merged-chr9-107635496-4	chr9	107634991	107635991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008138)	promoter-TSS (NM_008138)	-149.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	6.38662793961448	6.23830116944266	6.57364072515957	6.51984943195422	6.51631751566055	6.58293333976104	0.228167143209377	0.401008511094273	0.777149969525772
Merged-chr11-32350596-2	chr11	32350096	32351096	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	MLT1A1|LTR|ERVL-MaLR	2785.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	3.4488141814349	3.49037734626694	3.54139001196901	3.48925463940393	3.53737977881853	3.44777244198389	0.0120033897694149	0.983212377099252	0.996242007327823
Merged-chr2-61583904-2	chr2	61583404	61584404	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B4|SINE|B4	5318.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	5.59971693041515	5.37474252873382	5.65024830581371	5.61151825971433	5.84422748895419	5.54603985287136	0.269506705178555	0.417806032378589	0.788328494227065
Merged-chr3-96883591-4	chr3	96883069	96884069	+	856.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026229, intron 7 of 13)	intron (NM_026229, intron 7 of 13)	21729.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	4.63805339356697	5.05576177796775	5.19607439254533	5.47749306512188	5.57839102411902	5.16020955912312	0.915462611226772	0.020793194928178	0.165645823503952
Merged-chr17-5051932-2	chr17	5051432	5052432	+	805.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	56858.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.35352394900782	3.32174534771207	3.27034668244603	3.31136755075187	3.34196255557497	3.55962948103017	0.33209849240234	0.581938203842309	0.873484978987509
Merged-chr5-32134579-2	chr5	32134079	32135079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1893.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.44868210077533	5.40041509003046	6.20095921719629	5.68255607085827	5.28407722016514	5.85839501370641	-0.192857854834187	0.635719568115872	0.896757062179863
Merged-chr5-103655484-4	chr5	103654999	103655999	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028824, exon 1 of 4)	5' UTR (NM_028824, exon 1 of 4)	225.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	3.75969802345925	3.68872060584601	3.5526665883287	3.67522739910864	3.69999345159861	3.51017294529786	-0.130290755108254	0.815219742127055	0.956370078970016
Merged-chr7-4237676-4	chr7	4237205	4238205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-49.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	8.31507208977699	8.45748722332348	8.28901669508979	8.30423624593593	8.75721002581435	8.33844622050028	0.184770770935739	0.430891708649488	0.796614699034595
Merged-chr2-168579739-3	chr2	168579241	168580241	+	814.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	10624.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.97880693660931	3.73778295830836	3.64084087459459	3.41694220044058	3.30098890632147	3.65864717354708	-1.21402349361935	0.039973167595462	0.248879421608218
Merged-chr11-40754795-4	chr11	40754305	40755305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009831, intron 1 of 5)	intron (NM_009831, intron 1 of 5)	481.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	5.83166350981154	6.00138808428327	5.70564890603077	5.94294034816872	5.87417333891341	5.92164233632469	0.088986598366132	0.769847866002055	0.943285248796136
Merged-chr2-155443536-4	chr2	155443100	155444100	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2817.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	6.09063438444611	6.54232346032674	6.13309002367364	6.73336803980072	7.09500438820096	6.32737944082017	0.782645853063481	0.0184995418240325	0.153516493078099
Merged-chr17-45573318-4	chr17	45572797	45573797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-36.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	8.37200740620463	8.41959530136427	7.91314457741525	7.9665395461536	8.32831772053074	8.31213400733996	-0.0669982941928321	0.790303573097857	0.949368241827272
Merged-chr5-104005220-4	chr5	104004730	104005730	+	920.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053262, intron 4 of 6)	intron (NM_053262, intron 4 of 6)	16566.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	3.95255252683625	3.88057117702037	3.97312827279889	4.14859631476568	4.08869785397753	3.99293644000442	0.441199117041407	0.366767776367521	0.751896619413869
Merged-chr11-53782445-2	chr11	53781945	53782945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11972.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.28608235449815	4.12527303346014	4.93028994951434	4.78718544621739	5.22114149885829	5.30005648338845	1.4446518999541	0.00307074050660453	0.0428420818366113
Merged-chr13-23562462-4	chr13	23561943	23562943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-78.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	7.47591274929846	6.95827162453188	7.01144797749487	7.37196858626875	7.15942742187029	7.12286415724743	0.0709143314997876	0.795411522469785	0.951123178804868
Merged-chr1-151339046-4	chr1	151338564	151339564	+	889.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5422.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.68228608765566	5.99883734343274	5.9412373214086	5.514455175767	5.76783333262202	6.20852876106322	-0.0486267064378568	0.889438448967872	0.974240173857916
Merged-chr7-81195714-4	chr7	81195243	81196243	+	809.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-18061.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.41190328941063	3.144292700289	3.67391492361707	3.46168853965728	3.17313698728236	3.54460383253645	-0.0898510154503085	0.889636345242742	0.974254892867402
Merged-chr18-63694064-4	chr18	63693539	63694539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44E|LTR|ERVK	-1680.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	6.54612609142445	6.64761649902198	6.21361127407668	6.10983315815818	6.30938851110466	6.04733861071302	-0.53193982884325	0.0722887489855771	0.353157446871531
Merged-chr8-126495177-2	chr8	126494677	126495677	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-20112.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	4.8784363720197	4.85447857865187	4.70152261802342	4.72561859626934	4.09938634820733	4.22867719843661	-1.05516482165956	0.0256008376891984	0.189658350170773
Merged-chr5-53999207-4	chr5	53998716	53999716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	693.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	6.68837778565631	6.99573092083287	6.86409112258297	7.11437178994307	6.73968818557	6.99205341849681	0.149295311363553	0.577164941647453	0.8720513603276
Merged-chr4-132944307-4	chr4	132943813	132944813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21762.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	7.17076613272234	7.04696009360075	6.7349266437441	6.96824247240366	6.91881029624865	6.42714026806559	-0.306861883877524	0.29300599867864	0.690097176202335
Merged-chr6-31211365-3	chr6	31210844	31211844	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	PB1D11|SINE|Alu	7130.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.99528444450283	4.75267594082849	5.13111750041354	4.72512452034987	4.69307946605756	4.81920752959017	-0.490678682314094	0.218555754050605	0.61273880821229
Merged-chr7-127744390-3	chr7	127743845	127744845	+	721.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2430.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	4.46247358893822	4.25203618777484	4.63746909428332	4.4519157226654	4.41845586171292	4.66495519197557	0.146028784983864	0.742852349592596	0.935368371900894
Merged-chr6-127561736-4	chr6	127561241	127562241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-16234.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.49794111774713	3.6898180152599	3.71138664552686	3.90420821460792	3.51782332402278	3.56673983341426	0.137665125697161	0.810087869345156	0.954958386398407
Merged-chr19-42092107-2	chr19	42091623	42092623	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	B1_Mur3|SINE|Alu	1688.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	6.04478080217656	5.97195321938992	6.10008990561532	6.18001402186941	6.03153716391522	6.00399177682139	0.0677047834953408	0.814244833501431	0.956174647698565
Merged-chr3-96725069-2	chr3	96724569	96725569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 2 of 14)	RMER4A|LTR|ERVK	2370.0	NM_028925	74414.0	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	2.95128899897074	2.87484998758127	2.90255093571564	3.05999991169454	2.99782207183776	3.09522401346501	0.653228336373223	0.331380352108192	0.722673159460747
Merged-chr2-103606789-1	chr2	103606289	103607289	+	1000.0	f0_balb.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40479.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.35670949308393	4.21283868905873	4.29567422174389	4.37749856675169	4.2500130015237	4.12853884583041	-0.0788052380169467	0.863652691256738	0.968269312109804
Merged-chr14-21048067-1	chr14	21047567	21048567	+	580.0	f0_balb.idr	intron (NM_018829, intron 1 of 8)	PB1|SINE|Alu	4375.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	3.54191070176301	3.53077449641257	3.85447640089536	3.51821790494239	3.4982506167209	3.57673527126843	-0.39986425794555	0.483589660899541	0.826344998208973
Merged-chr2-164874117-2	chr2	164873617	164874617	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	3.30399537559006	2.89746849266407	3.18353280733524	3.02808857232354	2.84755539309204	3.36325064914283	-0.200913952780409	0.779783385421398	0.945906447921338
Merged-chr13-76098009-2	chr13	76097509	76098509	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081352)	promoter-TSS (NM_001081352)	651.0	NM_001360843	77041.0	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	5.29787546087476	5.62080347006282	5.44458241278538	5.36581989623414	5.75697085290658	5.70101953014869	0.297671177319726	0.391929442484263	0.770782330002482
Merged-chr3-117319846-4	chr3	117319349	117320349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177664, exon 7 of 7)	3' UTR (NM_177664, exon 7 of 7)	41027.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	3.99778802623661	4.02481813905599	3.78621967661694	3.85986963728445	3.84965054534098	4.27908035122121	0.165805564473992	0.75391916315105	0.938596961228429
Merged-chr17-26605784-4	chr17	26605279	26606279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	44267.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.55306819627606	6.59470221913937	6.05476523481496	5.17394410998529	5.12069691380376	5.06842542611389	-2.39206855776326	3.71007442443069e-12	6.45832369682069e-10
Merged-chr9-40581962-4	chr9	40581504	40582504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50621.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.43988378485118	6.45855197185829	6.70209230842021	6.4189842962466	6.65472359807522	6.88952699532476	0.209003608868866	0.459563542492099	0.813776617230955
Merged-chr8-86878735-4	chr8	86878233	86879233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6525.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.30066831208785	4.7372553484692	4.99341921018203	5.10829876780994	4.91553151062988	4.62284299550701	-0.28771438245257	0.503520400218806	0.837065404633163
Merged-chr6-141066024-4	chr6	141065521	141066521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-183248.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	4.06540400708756	4.06659485495114	4.06532753888048	4.0553303085401	3.76861055008179	3.9898344375405	-0.385926149558877	0.440076001376383	0.801567033070239
Merged-chr15-59646921-4	chr15	59646423	59647423	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.39150390598024	6.35093988171177	6.34288268883215	6.20337876527944	6.11688782830378	6.60980794314109	-0.0790381855944189	0.78821999618085	0.948904207939777
Merged-chr6-134917046-5	chr6	134916476	134917476	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3425.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	5.42588609240097	5.53508140976664	5.05661075625374	5.05488681744407	4.77761293840149	5.22479086319236	-0.710580314532375	0.0685623926845659	0.342492631763015
Merged-chr10-22059581-2	chr10	22059092	22060092	+	918.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	8487.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	2.52700679460483	2.5369762689818	2.51122377426864	3.08626645435105	2.90736981186823	3.03684085821799	2.82681291185472	0.000750996686349077	0.0144516494629357
Merged-chr12-4189248-4	chr12	4188750	4189750	+	773.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44715.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.5892300451825	5.59809663467176	5.77429599787417	4.97662885223975	5.14572349778149	4.88677510181152	-1.25300347358669	0.000489937660241956	0.0103390141601351
Merged-chr5-99215435-4	chr5	99214907	99215907	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37520.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.01254791994792	6.02222828607889	6.27583832025163	6.13224410015123	5.92982591981715	6.19914613339911	-0.0291194408475414	0.922032520874252	0.982542868764899
Merged-chr5-122640208-2	chr5	122639708	122640708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3703.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	3.08450906708243	2.91976444832326	3.03408049659275	2.73730204285623	2.53913176874269	2.80692308422505	-1.73586381336023	0.0235337275424026	0.179832344691729
Merged-chr11-75456357-3	chr11	75455841	75456841	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1624.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	4.21007071397929	4.44425609324895	4.05744748622179	4.30361883835813	3.99230477171858	4.17664350931539	-0.264644724808	0.589156716758148	0.876753289776615
Merged-chr16-25967500-3	chr16	25966993	25967993	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 13 of 14)	intron (NM_173379, intron 13 of 14)	138291.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	2.15951268630631	2.09034649511024	2.29649972172113	1.9669544678956	1.9886993576927	2.24414147608476	-0.857594268594835	0.35879880080042	1
Merged-chr17-50292922-4	chr17	50292456	50293456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010021, intron 1 of 10)	CpG	664.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.40178811521703	4.11987869880897	3.96565042285396	4.54968836301113	4.08037344686206	4.19080561575749	0.288769967206996	0.570745361536797	0.869253690275099
Merged-chr11-94077492-2	chr11	94076999	94077999	+	885.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	intron (NM_001025430, intron 5 of 25)	33294.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	5.98780689293928	5.61940416825668	5.63287257061811	5.88438650905511	6.32052633964818	5.63786339304834	0.407732184370218	0.253158381522277	0.650549802646869
Merged-chr12-55421460-4	chr12	55420944	55421944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	22619.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	5.80389933410156	5.41363537645486	6.04733773057921	6.47285919885312	6.31299381799591	6.15150777932243	0.954023345509352	0.00380039937022988	0.0500343197882024
Merged-chr15-98476608-3	chr15	98476026	98477026	+	929.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6157.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	3.76753913095115	3.67126296323726	3.64363104093488	3.41689837811473	3.41317518304789	3.43981927926449	-1.0005228776451	0.0788060491957537	0.370868463259694
Merged-chr17-29079054-4	chr17	29078513	29079513	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_036469, exon 1 of 2)	non-coding (NR_036469, exon 1 of 2)	113.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	3.73890943453437	3.67329708082047	4.03721640027266	4.00603057828167	3.91533582582549	3.65009954057891	0.170160482536575	0.755686453425846	0.939400440743942
Merged-chr1-171658151-1	chr1	171657651	171658651	+	567.0	f1_balb.idr	Intergenic	Intergenic	-5114.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	4.5813976051266	4.42164999871392	4.27269595255499	4.10933749973363	4.09138527315387	3.93977376974621	-1.04919009942256	0.0280490053173912	0.200214603624388
Merged-chr2-121271492-4	chr2	121270990	121271990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290830)	promoter-TSS (NM_001290830)	-83.0	NM_013735	27223.0	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	4.91776707004059	4.78492593568079	4.55536829828568	5.05359186541822	4.99972816245993	4.98573097679263	0.532107532798004	0.177346836935349	0.558267151201776
Merged-chr11-110473624-4	chr11	110473110	110474110	+	854.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-4905.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.84715246548834	2.95455641861908	3.01541544435104	3.08983983922692	3.0764835610489	2.84114304008042	0.349932774456733	0.613625545898182	0.887300906025089
Merged-chr5-150140673-4	chr5	150140174	150141174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119256.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.92576454104945	2.72681401886324	2.95689296648402	2.61710037380807	2.83579690104919	2.91235058851665	-0.391662806745345	0.595914732742043	0.879748615455831
Merged-chr16-90283744-4	chr16	90283245	90284245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	CpG	741.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	8.73624869266154	8.9270685363587	8.45454556613443	8.40141282586713	8.66635094943919	8.59545778615205	-0.230011292838031	0.318989523014592	0.71299004032015
Merged-chr2-91950926-4	chr2	91950534	91951534	+	908.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-686.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.20215397490483	6.55335904049162	6.36210986105238	5.93002137396151	6.2903919066719	6.421668176314	-0.257339812042761	0.400114984828773	0.776372018141352
Merged-chr2-57231933-2	chr2	57231433	57232433	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6D|LTR|ERVK	-5745.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	5.74267970213285	6.22814134006856	5.6253018228029	5.78927927234129	5.88248799893813	5.37188893977264	-0.34273146838831	0.35028919889559	0.738319835221541
Merged-chr18-56433283-4	chr18	56432794	56433794	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	1162.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.14643069466717	3.92319189785515	3.79076718207674	4.06366026300198	3.8726174508075	4.01523348040487	0.0397127033758775	0.938496295268174	0.986450737550045
Merged-chr17-31038577-4	chr17	31038081	31039081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19113.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.87719439081836	7.83852636012535	7.65222085633348	7.55129816085259	7.59723007937542	6.68749639890327	-0.63869788959806	0.0406671203350129	0.251473673367698
Merged-chr1-139068413-1	chr1	139067913	139068913	+	975.0	f0_balb.idr	intron (NM_001166501, intron 9 of 21)	GA-rich|Low_complexity|Low_complexity	90756.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	2.7408101499651	2.83323620603252	3.12164676398506	2.90652267916424	2.65783658196271	3.0831858091046	-0.0694335640296939	0.925922924718389	0.983305773102619
Merged-chr9-118651057-4	chr9	118650571	118651571	+	947.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	44362.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.41212417781241	6.54055676443757	6.8477247706195	6.38101445275189	6.24082558146099	6.172200401349	-0.542926636912478	0.059070451316245	0.314644824497861
Merged-chr1-152619994-3	chr1	152619468	152620468	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	5249.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.51490377328105	5.66081566034124	5.52810623456172	5.4564120674859	5.12513609381333	5.53454271522613	-0.387326261850842	0.263885128866434	0.661864470315546
Merged-chr4-40244286-4	chr4	40243765	40244765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E2|LTR|ERV1	-4440.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	5.4345913413574	5.80726775842567	5.77596603121126	5.77194354172778	6.11876602281972	5.93481531931563	0.491578810952975	0.134243458341614	0.489960947525619
Merged-chr8-108711224-2	chr8	108710724	108711724	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3420.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.0775277972338	3.17281415608347	3.11834069412271	2.88068545899954	2.962950086459	2.95336314890831	-0.893398517258342	0.184981755265352	0.569076167857577
Merged-chr9-66876719-3	chr9	66876240	66877240	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42034.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	5.74598595261971	5.41669686867511	5.17410424944585	4.90355210226353	4.62759088346459	4.6481383957079	-1.56882677309366	9.41020768566863e-05	0.00269258789927481
Merged-chr10-13500687-4	chr10	13500218	13501218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-310.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	8.21403015899721	8.56241462841043	8.00432584379013	8.17387607037749	8.56299755625986	7.9980511233091	-0.0175902405280619	0.948159226986697	0.988082186378433
Merged-chr6-99485395-4	chr6	99484921	99485921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	35572.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.36468919289772	5.53922891222376	5.29737097068778	5.19271071733085	5.46436529327043	5.00864132436665	-0.311467218406574	0.397780863650824	0.774593722474986
Merged-chr11-118203660-2	chr11	118203160	118204160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	9082.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.64508355953344	4.73531861777864	4.69925864055231	4.74468817156571	4.50733232726344	4.87605586845644	0.0297923475996237	0.942524671690082	0.987202156853573
Merged-chr10-25279499-4	chr10	25278986	25279986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	19677.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.6342268750924	4.53848528640342	4.37977816899214	4.41147769081393	4.45387578353571	4.35663140955947	-0.294578599673445	0.497461040692094	0.833640755144374
Merged-chr4-88726099-3	chr4	88725622	88726622	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3614.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.34985049370842	4.69933372213358	4.7881659881838	4.80637059421904	4.69520205121585	4.99196884543135	0.486415533320123	0.254363955604703	0.651334544328546
Merged-chr12-99608484-4	chr12	99607999	99608999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19475.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.3291386938033	5.42380235818802	5.45795586230911	5.59638458983087	5.50515048559649	5.68398999932927	0.362405205352186	0.267754358982503	0.664975925109882
Merged-chr15-9748050-3	chr15	9747540	9748540	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	828.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	4.76952324616022	4.58975785205726	4.84251496545318	4.45854495977217	4.66531212359866	4.51914971556441	-0.420769582363928	0.316248944108064	0.71033721531499
Merged-chr5-4935311-4	chr5	4934794	4935794	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-177078.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.4967300008985	4.33553339457895	4.12127358196839	4.1441491511096	4.39658207110267	4.23979244340068	-0.172117996596559	0.715902199747581	0.926491799309383
Merged-chr10-69205376-1	chr10	69204876	69205876	+	646.0	f0_balb.idr	Intergenic	Intergenic	-3176.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.03309717634092	3.05014864979675	3.18410100870446	3.36531661856239	3.11989740051065	3.31238535856048	0.768133288762142	0.232399728152972	0.628761339174128
Merged-chr13-88459038-4	chr13	88458549	88459549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-362423.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	5.25659461161	5.26930691038367	5.39631611719185	5.70496705629399	6.06168295485454	6.04329659289056	1.19818361585935	0.000269191685807859	0.0063778194170559
Merged-chr17-65783393-2	chr17	65782892	65783892	+	692.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	37.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	7.38510706131534	6.84394988399194	7.01369079425871	7.41110390653477	6.68225903919951	7.136425252274	0.0078238087709669	0.980043693842449	0.995416130723271
Merged-chr10-40079393-2	chr10	40078893	40079893	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-54125.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	5.02836795255754	5.20322819003217	5.02671759394956	4.69133898860254	4.76897094902168	4.95076688215489	-0.639697409731788	0.0950138031484081	0.411038189267585
Merged-chr18-57571094-2	chr18	57570594	57571594	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-18697.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	5.09965186966449	5.71744703398392	5.60370833866235	5.8840086202311	5.76539897723074	5.63881805016926	0.496544435226727	0.168811251340258	0.545438812408496
Merged-chr7-4239370-4	chr7	4238875	4239875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081239, intron 4 of 5)	intron (NM_001081239, intron 4 of 5)	1621.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	8.05864514163646	7.93320004602631	7.81509567641468	8.14791580214946	8.28146974984032	7.84576141762379	0.239310108571373	0.308897049624342	0.70476767553933
Merged-chr13-100866307-7	chr13	100865748	100866748	+	893.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32821.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.99111620056243	5.81168639423517	5.14215112236251	5.74547830869934	5.63174307609353	5.320468368764	-0.231029249511491	0.559051422057955	0.864901733108576
Merged-chr2-157447653-4	chr2	157447163	157448163	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	intron (NM_001025395, intron 2 of 13)	23370.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.96333722156085	5.59429467887972	5.16649324885796	4.87338263152786	4.45732018173834	5.09116154955181	-1.64326529861063	0.000154639186297164	0.00407835734181123
Merged-chr17-24453912-1	chr17	24453412	24454412	+	613.0	f1_balb.idr	intron (NR_125990, intron 1 of 13)	URR1A|DNA|hAT-Charlie	1480.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	2.83334576156504	2.49072465764834	2.77145006923033	2.79199996500655	2.69724030119949	2.90462176216579	0.475429293947979	0.534644572897185	0.853068627162717
Merged-chr15-50762878-4	chr15	50762388	50763388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	126161.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.77278987263825	4.852458542199	4.80961026478853	5.24704459635683	5.50272956038142	4.91705754889029	0.948129156939722	0.016184380998199	0.139958063510567
Merged-chr11-97799010-4	chr11	97798485	97799485	+	844.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-580.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	5.39302918233052	5.18706736346445	5.08229120930588	4.80950457199571	5.0860653372533	5.04168196256671	-0.520644855199219	0.167689808554703	0.54370629508105
Merged-chr6-121272685-4	chr6	121272185	121273185	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26779.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	4.63653708069086	5.04547282029853	5.05528250253824	4.82994852208346	5.21155036716017	5.184101859451	0.352905059282792	0.385409853892963	0.7664651010383
Merged-chr2-164822439-2	chr2	164821939	164822939	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028028)	promoter-TSS (NM_028028)	-247.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	2.90645044875034	2.76703494415565	2.87440408142274	2.58373086326105	2.40481177563734	2.82863488260701	-1.33762352418285	0.0997135092447868	0.421136841555491
Merged-chr2-84386869-2	chr2	84386369	84387369	+	815.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	38397.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.07901530116048	5.65327483504678	5.33112828622176	5.39033499689597	5.45783864255107	5.33168805408648	0.0293943985924689	0.936595826463416	0.986037792257163
Merged-chr9-47580685-2	chr9	47580185	47581185	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	50333.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.2954468002153	4.3268132153096	4.09189368835431	3.95332778214677	3.80910834540991	4.16073481449217	-0.80238699257357	0.105937505392627	0.43446438704272
Merged-chr7-83586253-4	chr7	83585769	83586769	+	766.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 1 of 22)	intron (NM_177695, intron 1 of 22)	1338.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	2.47071865555749	2.25584832140237	2.35907110710439	2.7520807283404	2.52787917412097	2.63390577181857	1.70617229188142	0.0445162457444844	1
Merged-chr14-27383633-3	chr14	27383128	27384128	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	intron (NM_027871, intron 4 of 10)	22239.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.20625629976908	4.21490324822459	4.33986855629909	3.8220763619055	3.74711852154415	4.19463051200775	-0.96514004020735	0.0582177108713069	0.311774777874935
Merged-chr16-94609388-4	chr16	94608895	94609895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2024.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.16700809412681	7.21981705794128	6.83386589618228	7.29247712783408	7.40687396628478	6.9080789645093	0.205121573836951	0.45392563208187	0.809981786389402
Merged-chr2-154675492-2	chr2	154674992	154675992	+	849.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	18466.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	5.04470967756637	5.19321518002874	5.01190978587344	5.20279581593418	5.18194447728697	5.33887023924134	0.302086423577597	0.398929403865751	0.775491025064514
Merged-chr6-121336781-4	chr6	121336278	121337278	+	796.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6298.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	2.65597124666978	2.54382379011756	3.02482494809968	2.76831147193661	2.81468934432489	3.20348301342125	0.911221050755365	0.2475962240142	0.644561473815517
Merged-chr2-181593564-2	chr2	181593064	181594064	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	4.45241185099712	4.55172409918829	4.52648199287244	4.42073669121873	4.29279757505804	4.33460754522791	-0.414622664132151	0.338574159657085	0.728543936569625
Merged-chr3-87376846-4	chr3	87376332	87377332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	445.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	5.89501318571543	5.62972121795323	5.78405050510227	6.96188913613204	7.37908991110184	7.01897607778188	2.21839266293729	3.10815570809974e-14	7.72010209431533e-12
Merged-chr11-114906878-4	chr11	114906389	114907389	+	973.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	16848.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.28128104155155	7.12608901794832	7.22774913849082	6.67381997368896	7.02052972657226	7.06717237263516	-0.426059126378121	0.096177815822621	0.413433199948537
Merged-chr14-26652116-3	chr14	26651588	26652588	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 3 of 5)	B2_Mm2|SINE|B2	13954.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	2.94039822681353	2.79897756757018	3.16020510304973	3.19884522656643	3.01963777364426	2.93657406617212	0.408072861049546	0.559365207737595	0.864930874255367
Merged-chr12-79629110-2	chr12	79628610	79629610	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	295623.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.09379130865443	5.59402474364306	5.75327233224861	5.81503843934139	5.85403431098332	6.09557780437319	0.151126086712934	0.648367205802106	0.901766609676507
Merged-chr11-100388813-2	chr11	100388313	100389313	+	966.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	8977.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	3.33779782604517	3.41559981234023	3.59045049663207	3.35592314756416	3.21630648125657	3.60962935535697	-0.197300385952565	0.747354688808977	0.936600911319824
Merged-chr8-86881411-4	chr8	86880903	86881903	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	3855.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.92170641780477	3.82478151268442	4.15433799159378	3.84299708877568	3.94648581161103	4.30441948788097	0.210918782898861	0.687085727168215	0.916983035113856
Merged-chr18-53855132-4	chr18	53854649	53855649	+	645.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6964.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.18806225952441	3.02479996014053	3.00524284906699	2.82081170076084	2.68501201417446	3.01873294843361	-1.16252445459923	0.107827391012081	0.43862326620598
Merged-chr2-165856879-2	chr2	165856379	165857379	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1294.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.36703450509421	7.23815922910432	7.45498099181628	7.12749379288339	7.5756312612918	7.74709242085129	0.226389865999151	0.395831271984913	0.773144649859171
Merged-chr13-105054998-1	chr13	105054498	105055498	+	594.0	f0_balb.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-68.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	4.27000275825118	3.97341023949356	4.07395237113524	3.88430588996414	3.59084424196144	3.89982526692946	-0.995554232014213	0.0597182086284805	0.316337707127489
Merged-chr19-38023518-1	chr19	38023018	38024018	+	600.0	f1_balb.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20059.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.55875191256954	6.48125342082282	6.54252325802738	6.17428623260042	6.34428862926404	6.74285685214325	-0.153194219071221	0.600082407144559	0.881452803037839
Merged-chr13-101797164-4	chr13	101796655	101797655	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28938.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.19995170045045	4.27555473799635	4.2288243033197	3.56209111004662	3.69125279905547	4.29582464795103	-1.03949477824092	0.0681609496185289	0.341651895496422
Merged-chr16-91845071-2	chr16	91844548	91845548	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	86582.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.60439400108116	3.81055813607378	4.92199692940318	4.45557010190282	4.7214386019472	5.04838397343143	0.50615607193414	0.579669985197188	0.872572319921262
Merged-chr16-49858692-4	chr16	49858199	49859199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	3045.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.84833335306014	7.92118577672252	7.53823321761849	7.82703051019434	8.16098708114769	7.61522758161114	0.158666483586957	0.542281083005855	0.857067349203709
Merged-chr11-44581450-4	chr11	44580965	44581965	+	908.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	4.32459179239847	4.37376284125852	4.07924858066948	3.39982476368219	3.18385664585355	3.56755171822789	-3.37301704993445	2.4147084182615e-07	1.54794343656936e-05
Merged-chr2-129297287-4	chr2	129296766	129297766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040371)	promoter-TSS (NR_040371)	-54.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	6.73644233421053	6.77501539350252	6.93136941053098	7.09607682823874	7.39940385992695	7.30945087787102	0.707767123366235	0.00449660462119898	0.0568018031456998
Merged-chr2-32981583-3	chr2	32981107	32982107	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151460, intron 2 of 8)	CpG-8008	476.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	5.63051139064496	5.69516212452382	5.55120289513002	5.57723337253641	5.62348679602577	5.33646283067889	-0.190940204269315	0.560673373135518	0.865261302076164
Merged-chr9-88733334-2	chr9	88732834	88733834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-1484.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	3.89337206136301	3.86480206593887	3.77853641586688	3.76410771608295	4.06895476433533	3.90051571108095	0.229872009290554	0.658657160897477	0.905024110242537
Merged-chr6-115544638-4	chr6	115544106	115545106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199033)	promoter-TSS (NM_199033)	-98.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	6.01982112212361	6.07313901339598	6.03964795868913	5.84769799080106	6.04406954856499	6.07823966466452	-0.0897282443260157	0.758418033393578	0.940145765228317
Merged-chr9-113727198-4	chr9	113726692	113727692	+	882.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14281.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	3.34690037989076	3.45169312154715	3.41677154101065	3.54756078260281	3.57922307301306	3.48808639022518	0.506243672691232	0.379094384066438	0.761621772253655
Merged-chr16-30521920-4	chr16	30521415	30522415	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	28663.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	3.61030651396542	3.47097393808813	3.25895330324568	3.01413295435807	2.9427750029578	3.33171483885465	-1.53538369616663	0.0244195952959199	0.18416620007096
Merged-chr2-174018185-4	chr2	174017679	174018679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58872.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.89680771219557	4.72927692837276	4.82309618733827	5.08034731041845	5.25512771005886	5.03754055422643	0.687486556593335	0.0684373434536976	0.34221507914146
Merged-chr15-73596073-4	chr15	73595584	73596584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	442.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	7.60776396056274	7.4622104001822	7.25384257978759	7.36897512549664	7.66511746767309	7.23821987046584	-0.0130873579853077	0.959356101623819	0.990174309444982
Merged-chr10-20774055-4	chr10	20773518	20774518	+	913.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-48940.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.30320805160863	7.18080450764112	6.54365282610913	7.09694720940106	7.50693702864399	6.76731128860673	0.165570410938856	0.618935267799853	0.889524760662882
Merged-chr8-95332985-3	chr8	95332493	95333493	+	891.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 1 of 6)	intron (NM_133954, intron 1 of 6)	709.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	6.53646675819677	6.90810231699947	6.80519670321483	6.88058098039703	7.10503000934395	6.6896817571358	0.238568760557473	0.389300307698502	0.769015431167891
Merged-chr18-36522254-4	chr18	36521744	36522744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5908.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	4.97473188765961	4.88707747391437	4.87712160575214	5.03677074017406	4.94393163910644	4.86680119241166	0.0836305956975252	0.824305302619674	0.958538023027357
Merged-chr5-120518318-4	chr5	120517813	120518813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	7121.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	8.261011519557	8.24668144152815	7.81786756038912	8.33923577085627	8.52320248926839	7.7554376127209	0.175282922296104	0.536842861490914	0.854215768737235
Merged-chr9-44335751-2	chr9	44335226	44336226	+	887.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013551)	TTS (NM_013551)	1011.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	5.36851671494087	5.4325761680403	5.31675601348933	5.37691195692419	5.37032326372537	5.2165359772785	-0.0939221280344892	0.78181088498166	0.946286689231939
Merged-chr5-92488359-4	chr5	92487859	92488859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	17298.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.42740729577972	7.28427793732171	7.25380033330901	7.40641345479855	7.62922409625696	7.20151113684185	0.15909457936208	0.520773255466738	0.84670172810341
Merged-chr12-73589295-4	chr12	73588784	73589784	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	L1ME2|LINE|L1	4488.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.64650569321615	4.42596945049783	4.08937893202757	4.14831133470009	4.32686935868776	3.82500274595382	-0.765001161020984	0.152456107237892	0.520574204916928
Merged-chr1-74285641-2	chr1	74285141	74286141	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	607.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	4.3964167024612	3.96978787986905	4.30056455036882	4.12184179158597	4.12936097480196	3.99201238219648	-0.409548997500563	0.408632567901318	0.782219074029928
Merged-chr18-36750103-2	chr18	36749603	36750603	+	800.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011879, intron 8 of 19)	intron (NM_011879, intron 8 of 19)	5447.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	5.30746879810744	5.27224694250672	5.27774176508821	5.28127822196933	5.26695343193472	5.24500549232155	-0.042010631411464	0.901928203150076	0.977365418427752
Merged-chr10-120220174-4	chr10	120219683	120220683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 3 of 6)	intron (NM_026617, intron 3 of 6)	-6877.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	6.93857138606223	6.96476930804012	6.85152502602026	6.89251211539239	7.17914861459618	6.59778099530945	0.0076238329388976	0.977971420379348	0.994994154947079
Merged-chr11-106623825-4	chr11	106623337	106624337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-10907.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.23327842230604	5.24498386323596	5.15822481944778	5.35149865003832	5.34676853232588	5.44159875979174	0.321192218310839	0.346172779410271	0.734515828466387
Merged-chr12-85597456-2	chr12	85596956	85597956	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.64353374687345	5.19839165910125	5.27932374824286	5.48293618478698	5.10256849512119	5.31130898140939	-0.177541666502366	0.634795938412808	0.896354115104213
Merged-chr16-11139571-2	chr16	11139071	11140071	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 21 of 22)	intron (NR_027502, intron 21 of 22)	-5039.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	3.65860243292803	3.26145745210138	3.70003765409899	3.68809937895123	3.41418098723621	3.66853103532229	0.144981193309962	0.810565710873038	0.955054272231421
Merged-chr4-16120861-4	chr4	16120360	16121360	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42783.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	3.58481694370849	3.91899551391253	3.69128741402539	3.70556618373067	3.47613660648268	3.76145336954714	-0.325113440405316	0.565323191211007	0.866599059240356
Merged-chr7-81849409-4	chr7	81848905	81849905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9596.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.25772354054216	7.01547136608509	7.04047718146976	6.91245408976659	7.05986122771774	7.40841758954231	0.0380019896660488	0.886501010491387	0.973794308941933
Merged-chr2-6259332-4	chr2	6258829	6259829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	MTC|LTR|ERVL-MaLR	-46335.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	6.50634493908345	6.47751659082597	6.29224526192667	6.39849632162564	6.59229460986013	6.4112481721326	0.0667686236277123	0.806061801533659	0.954102910475772
Merged-chr5-115480275-4	chr5	115479761	115480761	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 3 of 5)	exon (NM_001167691, exon 3 of 5)	4036.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	5.82812805942229	5.66619641568446	5.39487344196579	5.13250545810511	5.16993468710782	5.08490330644282	-1.01467403245531	0.00393815644969297	0.0513212406994601
Merged-chr10-67114023-4	chr10	67113523	67114523	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13235.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.77676411933021	6.87957322213279	6.05397626272344	6.61563008554389	6.87573592160309	6.30482454950897	-0.00390912976415627	0.990971251169228	0.998113069044251
Merged-chr11-120631351-4	chr11	120630866	120631866	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2181.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	6.94633521319632	6.92729099515691	7.10349039086748	6.93874960260727	7.23013673811797	6.92098642603405	0.0871893278741404	0.731531910120149	0.931449711201049
Merged-chr10-62509370-4	chr10	62508889	62509889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	-1632.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.74634501185966	7.70775359085739	7.55990718239912	7.36614008591049	7.54940677217487	7.24584360134774	-0.402408834783357	0.0862927559317534	0.3891526548233
Merged-chr15-27725198-4	chr15	27724705	27725705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43663.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.28897966985122	6.50775673467255	6.3631422920241	6.0128001660797	6.37790694396228	6.22483387890024	-0.283805363532623	0.327636043264824	0.719793584677403
Merged-chr16-93026435-3	chr16	93025940	93026940	+	945.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200366.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.69825469877948	4.41733145707478	4.23519854810414	4.37886432980086	4.45179690473459	4.57142476320779	-0.020347530440355	0.96424229151437	0.991383573363743
Merged-chr17-29514605-4	chr17	29514092	29515092	+	846.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23547.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.55146581435364	3.1570007578585	3.04887520340331	3.32221048979344	3.47260926630832	3.36930164178256	0.43832389982723	0.511740364255752	0.841519675193282
Merged-chr14-55712034-2	chr14	55711534	55712534	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019984, intron 3 of 14)	intron (NM_019984, intron 3 of 14)	1054.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	2.50673125197983	2.40077283213997	2.53483222998896	2.58087826233538	2.454325939498	2.79125693857022	0.760477423687693	0.33927682860928	1
Merged-chr4-125119285-2	chr4	125118785	125119785	+	760.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_153159, exon 6 of 6)	exon (NM_153159, exon 6 of 6)	8596.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.344351399945	4.43203115956804	4.6739504626776	4.50148291426277	4.03406105673283	4.54920832617543	-0.285493761505014	0.551527546300878	0.861262369052689
Merged-chr7-28349084-2	chr7	28348584	28349584	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1605.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	4.1506901540161	3.9789749177574	4.54768872058415	4.06683805264524	3.95253412345331	4.34232870694449	-0.319643716454226	0.535491171256107	0.853563387841999
Merged-chr7-128063500-4	chr7	128062984	128063984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 1 of 29)	intron (NM_008401, intron 1 of 29)	844.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.58738589432586	5.677943467437	5.67466636470652	5.28729346583225	5.3375775238629	5.7361532855946	-0.36039381703772	0.290582331013022	0.688461691313539
Merged-chr3-51408970-4	chr3	51408492	51409492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025523)	promoter-TSS (NM_025523)	-37.0	NM_025523	66377.0	Mm.331007	NM_025523	ENSMUSG00000037152	Ndufc1	2310016K22Rik|KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	protein-coding	6.4048565623906	6.42335536123771	6.16636676129327	6.62533957839036	6.49915005445859	5.98820824748119	0.110918376740021	0.721751470766856	0.928606209603791
Merged-chr13-46927029-4	chr13	46926509	46927509	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	2709.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.5533676010155	4.68055789386409	4.88182600379624	5.05137404098826	5.11330493856955	4.98286285998668	0.78656643310151	0.043466852492953	0.261972320891904
Merged-chr6-17643524-1	chr6	17643024	17644024	+	710.0	f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6514.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.73897900831303	5.7143931858208	5.75528931443215	5.87093133063992	5.90738137933844	5.91559481823334	0.292154058494218	0.328052008874388	0.720241143792693
Merged-chr10-91122861-2	chr10	91122361	91123361	+	833.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	1102.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	6.06059027402586	6.04542180430604	5.70141674870143	6.05045084584987	5.87838651174424	5.4920916049447	-0.2062120094074	0.5412946868955	0.856797425729538
Merged-chr3-109011019-4	chr3	109010529	109011529	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	16578.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	3.32778895860676	3.34330840564372	3.27053869695591	3.07787089397732	3.24509197595762	3.45067890557208	-0.218518049603148	0.728644760401081	0.930478966998914
Merged-chr4-139587535-4	chr4	139587037	139588037	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	12817.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.01631380177785	3.01537111383471	3.00919290182852	3.82054791349417	3.56667273368101	3.87047687184465	3.19251129237659	8.54360632240952e-06	0.000349334837776438
Merged-chr8-106958391-4	chr8	106957898	106958898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	22648.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	3.66858552661116	3.46363777235937	3.43300574778372	3.43668763337051	3.31911906508973	3.20706936858255	-0.769274627182111	0.207362741295719	0.598124311908915
Merged-chr11-44441430-3	chr11	44440935	44441935	+	842.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29113.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	3.51601707435673	3.53730588764169	3.79991135696646	4.40410679831646	4.69864721075139	4.52648026660941	2.938729639159	6.49858865995343e-08	4.84963735620991e-06
Merged-chr11-114917289-4	chr11	114916778	114917778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17108.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.1672812387392	6.2648085658903	6.199163271331	5.70163888267267	5.8213956126639	5.88133651170127	-0.713257984033597	0.014376617155095	0.128995742534313
Merged-chr12-73598441-4	chr12	73597940	73598940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	13644.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.27666649349412	6.10554545331589	6.21203743532639	5.96900947684367	5.96847117364477	5.94121226317197	-0.408356805183123	0.15327359195442	0.522110330345248
Merged-chr15-27675300-4	chr15	27674796	27675796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	6246.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.63019011376704	6.62258559773481	6.56628180882019	6.32728415101938	6.4292270591099	6.13366801179971	-0.477162408056884	0.0792953158286048	0.372263859143904
Merged-chr7-99965308-4	chr7	99964805	99965805	+	732.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	15153.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	6.63312460323867	6.58955690068744	6.65736953498243	6.16156747446725	6.06124687506912	6.33482680829044	-0.729603860431894	0.00719837085275319	0.079765886524955
Merged-chr19-37059796-3	chr19	37059267	37060267	+	810.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 8 of 10)	intron (NM_198300, intron 8 of 10)	-114076.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	5.14190801261612	5.20936811196894	5.00946231419875	5.95042950019275	6.09402133231165	5.72384710976587	1.52938296232841	7.11965206713795e-06	0.000299652002631469
Merged-chr7-66392718-4	chr7	66392236	66393236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053080, exon 13 of 13)	exon (NM_053080, exon 13 of 13)	-4395.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	6.20377354663334	6.08203354718168	6.18930409463623	5.98950732843655	6.3434247828637	6.16585997469739	0.0407481995369437	0.889198951037211	0.974207858658472
Merged-chr1-138160501-1	chr1	138160001	138161001	+	564.0	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	Lx9|LINE|L1	14625.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.31005569675074	6.5610914058899	6.49481103362444	6.27165865407719	6.46896850339563	6.53671961892512	-0.0494631124487409	0.857936782658194	0.966785186918462
Merged-chr6-116133969-4	chr6	116133468	116134468	+	906.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177412, exon 3 of 6)	exon (NM_177412, exon 3 of 6)	59406.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.69665556747115	5.51038968460358	5.86011195010066	5.53314476895174	5.43974295108108	5.509191848323	-0.366978598616758	0.264391509394917	0.662276944757498
Merged-chr7-28386187-4	chr7	28385671	28386671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6519.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	8.50201366308613	8.23999799398623	7.9885607175679	8.42545836890598	8.58370370360357	8.25134721928434	0.229671538197975	0.34354352872209	0.732367959280244
Merged-chr11-96829540-4	chr11	96829049	96830049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-47.0	NM_001130450	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	7.04988805882179	6.87535852716045	7.40698857268202	7.3096990732585	7.21411691756845	7.28389305754703	0.222806796745509	0.394154248006541	0.77206906441863
Merged-chr8-82917191-3	chr8	82916911	82917911	+	738.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54055.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.55395065697745	5.58621083763578	5.62033996426008	4.08608181952903	3.83081489981538	4.49602077156792	-3.66099574592053	7.67946920413751e-14	1.79492492566818e-11
Merged-chr4-135351296-2	chr4	135350796	135351796	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	B1_Mur4|SINE|Alu	1918.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	2.75861527280591	2.65316980829286	2.76573316967048	2.96930018944147	2.84969986890134	2.90121208457926	0.935347099709603	0.191214596041507	0.577822466760773
Merged-chr4-136286034-4	chr4	136285565	136286565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-2.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	6.77842315509355	7.34015208495476	7.0009007441102	7.00095588501005	7.15016226942367	6.99060409126762	-0.0202673899013771	0.941121969527849	0.986908937621943
Merged-chr7-30411140-2	chr7	30410709	30411709	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2579.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	3.91646314184942	4.06082636582004	4.49493761893361	4.25724648621926	4.35565292658137	4.80843927299787	0.833259250348164	0.105244355623255	0.43295135443328
Merged-chr4-129190671-4	chr4	129190178	129191178	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347203)	promoter-TSS (NM_001347203)	883.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	6.2167265662408	6.34454803882906	5.78687458772349	5.95083195937545	6.45345915233736	5.90364957804052	-0.0108019107099957	0.975052806850297	0.994418938322767
Merged-chr5-122652667-3	chr5	122652165	122653165	+	931.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284402, intron 1 of 12)	intron (NM_001284402, intron 1 of 12)	2241.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.53960038183061	4.14364743178358	3.96117235736692	4.06310337979996	3.63217611001923	4.03234338168419	-0.943038412901286	0.0860923183231582	0.388606359066581
Merged-chr5-124424498-3	chr5	124423996	124424996	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	intron (NM_001081203, intron 1 of 31)	1106.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	5.92769571297629	6.05335139538216	6.12085154993668	6.39181977270506	6.51128795702146	6.1816145212902	0.582355336929233	0.0429677006092865	0.259980834227568
Merged-chr18-23871675-2	chr18	23871175	23872175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	67705.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.81038503601313	5.91622860371116	5.84937994434087	5.93390774490006	6.24924579476029	6.00713471637926	0.38164154462869	0.206281761908325	0.596855755513016
Merged-chr4-53145984-3	chr4	53145481	53146481	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	MIRb|SINE|MIR	13914.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.54211506335451	3.32220756752478	3.62778863044258	3.43620044195006	3.59957286778104	3.31165595158459	-0.135256277802898	0.823154600951253	0.958214218900685
Merged-chr1-127278235-4	chr1	127277747	127278747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73261.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.49216005923803	5.51848021530088	5.24548903518845	5.54609622597478	5.12957166658945	5.43624597135551	-0.112654250547326	0.753325198966654	0.938549578325581
Merged-chr15-73062446-3	chr15	73061918	73062918	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1214.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	3.26377960588791	3.49131917672744	3.68224005820546	3.49016647793846	3.73160712868864	3.98415925454838	0.90588376953326	0.13381548631896	0.489097037875759
Merged-chr3-65930471-3	chr3	65929979	65930979	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27770.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.06411820154334	5.82390455544651	5.42565478899108	5.77353861086425	5.64410639404287	5.69897395106899	-0.192443512687864	0.574153438726486	0.870523174873875
Merged-chr15-64096232-4	chr15	64095730	64096730	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	MIR|SINE|MIR	-35782.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.25359611179445	4.7292587559122	4.62973463810197	5.24084775394298	5.19811868033578	4.98697030500795	0.501988725620278	0.23478221338219	0.630938811197406
Merged-chr4-134946170-3	chr4	134945669	134946669	+	869.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	15189.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	2.97325824908884	2.98682648945916	3.13730012137482	3.03241660498882	3.13753307010127	3.03438697711651	0.192395937504098	0.770812721965821	0.94345245755247
Merged-chr9-88547411-4	chr9	88546918	88547918	+	822.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142943)	promoter-TSS (NM_001142943)	-602.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	4.14723374457718	4.35858218284753	4.73000628588846	4.31225270660611	4.53653384388843	4.6493891408075	0.203566914457021	0.666767098887918	0.908367417591988
Merged-chr3-121491076-4	chr3	121490565	121491565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	41279.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	4.63615105093488	4.24364401293861	4.28727596731147	4.74706891599128	4.51250815782701	4.35706676637702	0.36270618472811	0.43356921193347	0.797815674529737
Merged-chr16-20412146-4	chr16	20411655	20412655	+	870.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	14239.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	4.72352230727466	4.55678392799248	4.51431259309608	4.79356996314895	5.04180718954358	4.82898469114085	0.675651086523185	0.0967472391203113	0.41464408281404
Merged-chr15-25272129-4	chr15	25271637	25272637	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141627.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.90145495406542	2.79586511899617	2.75191388884634	2.89406298542733	2.96238675381286	2.95016003514595	0.56882155608985	0.417372910286436	0.787970785225811
Merged-chr4-46485833-4	chr4	46485313	46486313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3516.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	5.16999990102321	5.01678936235201	5.56810471041958	5.49715575491269	5.00291963898741	5.4978697061372	0.166032253105912	0.677421309003877	0.912912546637642
Merged-chr12-79319486-4	chr12	79318988	79319988	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	L1MEc|LINE|L1	22137.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	6.22393647020991	6.01325813559488	5.37262749133789	6.19212236426877	6.09890675485953	5.54186893142515	0.0918856946336607	0.815579472030817	0.956419374374466
Merged-chr7-141327682-4	chr7	141327177	141328177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	48.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	7.99456564689368	7.98880144718145	7.83010679860074	7.87440443876879	7.91950883584649	7.66484086741021	-0.161901505325682	0.465179703328767	0.816844646665488
Merged-chr17-73944945-4	chr17	73944446	73945446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5250.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.4332874756292	6.3977939774349	6.29557175184719	6.33504107146923	6.54901363481404	6.43269902189125	0.106288178228028	0.694340189936109	0.919210273513843
Merged-chr7-47014774-4	chr7	47014299	47015299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6385.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	6.51631202794037	6.06124195985635	5.99829599589621	6.55194804445354	6.3909883791068	6.19888013575804	0.280969734302064	0.370417963300866	0.754835402087431
Merged-chr2-29004177-4	chr2	29003671	29004671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	50895.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	4.91327569606355	4.58282219760276	4.69432000593374	4.69868621747709	4.77998385064798	4.87430183523337	0.0989560746916076	0.807903236896514	0.954583809755663
Merged-chr15-76817087-4	chr15	76816584	76817584	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1086.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	6.5268111995136	6.38284895388342	6.39770271706626	6.11027975658186	5.8572171382679	5.97478309163578	-0.770907894963482	0.00673970609456286	0.0760300250428941
Merged-chr15-59314935-4	chr15	59314420	59315420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009270)	promoter-TSS (NM_009270)	-172.0	NM_009270	20775.0	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	3.26174827559873	3.1498718035193	3.08182839728915	3.00048357831961	2.98204928825999	3.26839514719817	-0.378113506318634	0.568258927162569	0.868531823304055
Merged-chr3-135689148-4	chr3	135688622	135689622	+	867.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2425.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.86342978431976	4.64129761834301	4.49812123028927	4.93944252231204	4.92739211779665	5.37450892590414	0.887709427930222	0.0355560719442184	0.231534640345479
Merged-chr11-104432438-2	chr11	104431938	104432938	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	9853.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.07066105880763	4.98136901483487	5.24086863296147	5.08748343706238	5.05210374206524	5.47514029218972	0.232386350259262	0.539075241442292	0.855750032878982
Merged-chr12-100024065-3	chr12	100023549	100024549	+	871.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	59550.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.82090465464511	3.96352469323535	3.89299284556597	3.46868109467781	3.3193649069442	3.71464314356122	-1.38302395824826	0.0162022516533956	0.140053704090561
Merged-chr15-27213097-3	chr15	27212598	27213598	+	757.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-253579.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	2.47082263867989	2.64014758479453	3.18522506422842	2.57909250860455	2.3612481346354	2.3680910000848	-2.03482382008311	0.0254459223862807	0.189095678299334
Merged-chr16-36660467-3	chr16	36659950	36660950	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	B1_Mus1|SINE|Alu	5627.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.45280467716306	3.0399075828712	3.17947328721503	3.26584290867147	3.16956494300608	3.36600967821539	0.108658625714689	0.867729927805887	0.969442397421746
Merged-chr15-102506612-3	chr15	102506114	102507114	+	802.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009582, intron 1 of 13)	B1F|SINE|Alu	4086.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	2.98465634424566	3.02230751209155	3.2248980681206	2.96788350272396	2.93371666381846	3.01296346151355	-0.489788637884137	0.465846376133543	0.817215071372066
Merged-chr19-37375803-2	chr19	37375303	37376303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-600.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	7.74252833080082	8.09859857572512	7.95917691447327	8.64891208253412	8.99635825884784	8.45111330623588	1.0926049070779	1.09859988069664e-05	0.00043426270248459
Merged-chr2-167692152-5	chr2	167691744	167692744	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	1067.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.16915439578317	7.40735947598548	7.28721840926661	7.09349228242411	7.27863737175823	7.36646796373347	-0.0651915381823742	0.787609394563467	0.94877064431094
Merged-chr8-116587237-2	chr8	116586737	116587737	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	82222.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	3.82196998747597	3.67824492166631	3.93294550969566	4.03659877859094	4.02663776379556	3.79845977811836	0.485271242670353	0.35090601225723	0.738857924690004
Merged-chr2-71318793-2	chr2	71318275	71319275	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	48779.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	3.85093550125621	3.91231288742972	4.03818961177195	4.42739343043174	4.16358530963138	4.20217136745101	0.976517830227021	0.0448316889787924	0.267007027166799
Merged-chr19-8838630-2	chr19	8838130	8839130	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008144)	promoter-TSS (NM_008144)	616.0	NM_010316	14704.0	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	3.53297032225246	3.66563426306964	3.78149820683097	3.57684761375526	3.63965754225655	3.48183430637841	-0.300309132364361	0.593616316072347	0.878589727861081
Merged-chr2-51022675-4	chr2	51022176	51023176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	112992.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.0191971556497	5.06436975214966	4.44934308837229	5.00221168259216	4.7844223070652	4.4208763849485	-0.264441663200043	0.572110303064191	0.869795143026488
Merged-chr2-166875094-4	chr2	166874571	166875571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 30 of 38)	intron (NM_001085495, intron 30 of 38)	-31025.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	4.82232017513704	4.79567968675062	4.60419088034234	4.56943248811862	4.64445585374996	4.62955162117828	-0.320349641359655	0.430851031184361	0.796606987332891
Merged-chr5-115007206-4	chr5	115006717	115007717	+	880.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4307.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	5.14328037362649	5.14934603388955	5.15477762167775	4.80638829233748	4.79617536567824	4.9454500603692	-0.658827540453205	0.0750094841857674	0.360571832859606
Merged-chr19-23273902-4	chr19	23273381	23274381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153808)	promoter-TSS (NM_153808)	16.0	NM_153808	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	5.15884701420146	4.85553072159346	4.82000000118448	5.04165904613979	4.67297376318841	4.84751208688052	-0.222673058348576	0.583112804774133	0.873907285988058
Merged-chr1-161877748-2	chr1	161877237	161878237	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	5.77440001429062	6.11670339769981	5.58254307853233	5.67602644639415	5.96068721526475	5.35732913447601	-0.269029150246951	0.462273353469233	0.815159087955196
Merged-chr6-97179593-3	chr6	97179105	97180105	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-481.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	6.72708559836907	7.12068024897674	6.75075521323926	7.03471884568224	6.91632486933198	6.23317217014033	-0.152137077545856	0.638515813434937	0.897576536084903
Merged-chr5-108461264-4	chr5	108460745	108461745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172716)	promoter-TSS (NM_172716)	-87.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	5.58041426911045	5.83640589034327	5.97147844389754	5.77801815964889	5.32130421861274	5.37412731995719	-0.539382910768012	0.125243533739637	0.47354314333656
Merged-chr13-34239646-1	chr13	34239146	34240146	+	542.0	f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	76682.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	3.85304037077149	3.58024888233775	3.7409062831606	3.54484839187042	3.41089158571071	3.60406904124001	-0.760409301035304	0.180018593732582	0.561641812797175
Merged-chr19-40588495-4	chr19	40588001	40589001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-38.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	5.73107693098073	5.80497837414985	5.63110490555132	6.36553597784874	6.86219886120842	6.20221033535006	1.3411658569976	3.99588224873106e-05	0.00130644153301538
Merged-chr15-97361177-4	chr15	97360686	97361686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113899.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	7.86929396836275	8.01536650322757	7.85654444232676	7.651280162759	7.89252132824253	7.28868498453767	-0.388554045338897	0.1287838223785	0.479799601167289
Merged-chr1-155097426-4	chr1	155096927	155097927	+	730.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2209.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	7.69975569656989	8.02019165096926	7.67717586708071	7.55213144027011	7.98190414509523	7.55063454497103	-0.133491970422032	0.605465194882908	0.883581756351046
Merged-chr2-4592620-2	chr2	4592120	4593120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	32866.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.17677418068979	4.09794478237743	4.40928383239941	4.24975263151134	4.31708980826125	4.2613240529694	0.146002691506996	0.752514349386981	0.93828054640501
Merged-chr4-59381241-3	chr4	59380752	59381752	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 6 of 16)	intron (NM_001163288, intron 6 of 16)	57381.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	1.97668569106284	2.03936897945893	2.13705011801075	1.87919052695411	1.88282659334241	1.80932230653066	-1.6806987483272	0.0989805025809576	1
Merged-chr15-79029074-2	chr15	79028574	79029574	+	752.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008197, exon 1 of 1)	exon (NM_008197, exon 1 of 1)	862.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	4.31859641935075	4.17134884351014	4.18035803683221	4.37332955769363	4.13058628931685	4.66157560336681	0.443526320756019	0.35499951711703	0.742013108098014
Merged-chr4-150078104-2	chr4	150077604	150078604	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9399.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	3.74605512184745	4.00298200731595	4.0161534908319	4.10093792512157	3.78820560065859	3.93987673074672	0.064665602742516	0.901221263914373	0.977129403312144
Merged-chr13-4609206-4	chr13	4608721	4609721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018859)	promoter-TSS (NM_018859)	-57.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.44794347260553	5.62944000950759	5.18475861866292	5.30559210840276	5.39743886870323	5.47176276503025	-0.108389870739186	0.757661538903982	0.939883186830738
Merged-chr7-44952201-4	chr7	44951691	44952691	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077591, intron 5 of 10)	intron (NM_001077591, intron 5 of 10)	8951.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	3.98800163523816	3.84053005419572	4.19954267774748	4.15983404605411	3.88838634263244	4.30868907138173	0.324281090379948	0.52729039130186	0.849915901776182
Merged-chr15-25862990-2	chr15	25862490	25863490	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	HAL1|LINE|L1	19692.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	3.21168741700512	3.31517486550427	3.54981048149955	3.13816337352287	3.0675886539512	3.19227971739542	-0.9620990492294	0.133932196497739	0.489320941056643
Merged-chr1-151595747-2	chr1	151595247	151596247	+	896.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	24374.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.79066598538285	6.99172318488186	6.84535108904893	6.8867231652378	6.79702277943368	7.01429090232583	0.0228335551122327	0.927618896060198	0.983626621893489
Merged-chr9-63990085-3	chr9	63989582	63990582	+	765.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	31977.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.47547106389644	5.36084051580015	5.45462558980665	5.7070461920497	5.50232958647696	5.45803458733025	0.2533078201651	0.443377995512361	0.803776494488375
Merged-chr18-39199964-2	chr18	39199454	39200454	+	856.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	206809.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.54690810382812	3.53316805034875	3.78489638482554	3.4544014092954	3.45441298762967	3.55194379894415	-0.486223273103616	0.394443557383998	0.772364557886001
Merged-chr7-127206510-2	chr7	127206010	127207010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1958.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	4.60136014913702	4.49170007619511	4.7542981324119	4.80943588188362	4.92994760466774	4.78186837848431	0.548797319584418	0.172962652089567	0.551687207865922
Merged-chr19-53942125-2	chr19	53941625	53942625	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-2181.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	3.51867545907258	4.11333641268018	4.09911071902518	4.07579552039021	3.97372784447801	4.12174094734671	0.346402378292288	0.534677560323717	0.853068627162717
Merged-chr14-55793604-4	chr14	55793098	55794098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4741.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	7.26050136002353	7.28511656239249	7.39777667037792	7.43878708734172	7.72788463705802	7.10955908715467	0.220277610967179	0.404880986272097	0.779791650050306
Merged-chr7-102204726-4	chr7	102204220	102205220	+	944.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	MTD|LTR|ERVL-MaLR	5147.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	5.4620863116027	5.45765084399353	5.22422653311961	5.58586514919339	5.91005923334277	5.65832565805897	0.635477630107616	0.0600407999985271	0.317208326861033
Merged-chr7-34984627-2	chr7	34984129	34985129	+	766.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	71937.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	2.54410972698712	2.65854788217754	2.7579822241164	2.66355324926594	2.33649335319236	2.58426457429721	-0.701385250840264	0.387673996211059	1
Merged-chr6-115995107-4	chr6	115994649	115995649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-144.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	7.23044741725191	6.97785930368911	6.83555062659267	7.08677770599804	7.25846820264289	6.96815500181881	0.128153973842685	0.623328714268668	0.891380356166716
Merged-chr19-41992682-3	chr19	41992134	41993134	+	798.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	B3|SINE|B2	10871.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	5.53956027520717	5.65721735495142	5.52865857656636	6.03963064108375	6.1498786099229	5.62241385382974	0.703221938590527	0.0330988379978591	0.22187127303036
Merged-chr6-72091105-2	chr6	72090609	72091609	+	572.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6499.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	3.60539731151549	3.51541066163143	4.07775389725979	3.89949648192592	3.59287562774265	3.9215236289861	0.196965260548669	0.735451669951002	0.932744628746236
Merged-chr3-144705296-4	chr3	144704780	144705780	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	15055.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.05324127199867	5.20524142307653	5.30410860256763	5.4596847361316	5.17950489750251	5.74155405530731	0.556646713995342	0.135318107727635	0.49154257303863
Merged-chr8-106683545-4	chr8	106683023	106684023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	455.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	5.67271390678401	5.84192766971892	6.16641482037887	6.51237846483189	6.368380263458	6.09822189121355	0.758949914780303	0.016247612472311	0.140314617394504
Merged-chr11-100298439-3	chr11	100297937	100298937	+	767.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21512.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	2.43679799179081	2.61964877263807	2.71497788949756	2.53415710681859	2.48512720918143	2.47758709890666	-0.550240628822007	0.487747605108126	1
Merged-chr1-152168550-4	chr1	152168021	152169021	+	895.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78201.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.65785789257319	3.89663247091802	3.82088444990974	3.44534295352314	3.31393269469249	3.47085272794974	-1.41474487397935	0.0145286584533105	0.129821801179453
Merged-chr9-108345689-7	chr9	108345401	108346401	+	805.476196	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1930.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	4.25133636678934	4.26861541550758	4.59802364071302	4.49308142899882	4.78781832533044	5.22156701768164	1.1646722839948	0.0129141837931815	0.12039926107149
Merged-chr6-72146602-3	chr6	72146096	72147096	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-23399.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.17537407996394	3.47079964954409	4.21849569759853	3.73447358433725	3.57450120563682	4.24425513232133	-0.343211280775001	0.588126487692119	0.876193818234966
Merged-chr16-91347587-4	chr16	91347070	91348070	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25213.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.11838645408404	6.34107999709896	6.1416188091333	6.08020542624092	6.22358008156743	5.70156428009199	-0.291092991314867	0.355128029366539	0.742113945138654
Merged-chr19-34553148-1	chr19	34552648	34553648	+	610.0	f0_balb.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	2060.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	6.57622324611957	6.61388941549435	6.61497777230097	6.94983724554838	7.49358434113014	6.98220761099435	0.888363782305387	0.00151853455745925	0.0249268541047681
Merged-chr14-61684376-4	chr14	61683865	61684865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1992.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.20961442152987	7.12334327997371	7.04040504193803	7.14853119801696	7.31585757430433	7.0716346645176	0.089908876577691	0.709399235980539	0.923961035007839
Merged-chr1-152531759-6	chr1	152531168	152532168	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	93549.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.78160375274619	6.50407203581532	6.6594056397928	6.72153848995252	6.68580323167295	6.74983157598903	0.101523788746408	0.695481499990076	0.919289041383579
Merged-chr12-100106497-4	chr12	100106010	100107010	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5821.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.28216107713525	4.21925968652851	3.96028095802262	4.32733509522185	4.5676696992675	4.32572076080469	0.67029303915004	0.159630913799361	0.531877190382303
Merged-chr13-3634070-4	chr13	3633591	3634591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267724)	promoter-TSS (NM_001267724)	59.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	5.56409529754153	5.49165617725007	5.48695078332606	5.56171790372589	5.39985423416901	5.4914580239299	-0.0644245479328494	0.843222641452657	0.963312549598307
Merged-chr4-53384949-4	chr4	53384433	53385433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55480.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	2.94163407068467	2.83408981150008	3.10543053609276	3.19842652625066	3.04312004698897	2.93775950495586	0.491470135749845	0.474358727832734	0.82139231300766
Merged-chr8-123949340-4	chr8	123948846	123949846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172288)	promoter-TSS (NM_172288)	-81.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	6.97860513345773	7.48985789445302	7.38164905126233	7.25688296099385	7.36007579506432	7.46953677295232	0.0907805274515975	0.728418814555605	0.930478966998914
Merged-chr19-11787108-3	chr19	11786609	11787609	+	546.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16694.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	5.11102010277014	5.01215907380895	5.01356417311415	4.3152062371475	4.53312950741812	4.54308712183395	-1.3471731907944	0.00101504301269897	0.018222157281695
Merged-chr9-64775666-4	chr9	64775168	64776168	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35343.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	5.77035173588168	5.56607743291636	5.86964472141054	4.87485865135432	5.25780399377619	5.50828049133547	-0.967597249664564	0.0093288952810486	0.0958911326183436
Merged-chr7-25652563-3	chr7	25652062	25653062	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	6199.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	2.67686426598387	2.603503833883	2.78102171559548	2.84522497876669	2.62072645834134	3.0286187180725	0.780286390733942	0.300428897316623	0.697298854445564
Merged-chr11-51681773-4	chr11	51681213	51682213	+	848.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6921.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	3.18503908156066	3.47085876438959	3.3663116675945	3.41088933939203	3.25826203911285	3.32476173567904	-0.0625861276657743	0.918955419774477	0.981874294629856
Merged-chr11-22665488-2	chr11	22664988	22665988	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153205.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.07771521075904	3.79148886864949	3.82628623951058	4.21728795803808	4.06593875570418	4.14670025995724	0.686986957008927	0.172599550362652	0.551226813025854
Merged-chr11-6389147-4	chr11	6388650	6389650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5975.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	6.73257603935682	6.75681317562824	7.04482176736424	6.95043870335432	6.65894950554037	6.96029297663207	0.0197209719387079	0.941254050706707	0.986929673509898
Merged-chr4-136143768-4	chr4	136143275	136144275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-47.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.05620168241849	8.00927695860821	7.75584087403478	7.84617712860574	8.13631844154401	7.48739382286796	-0.127813296757124	0.627820454316993	0.89339186113949
Merged-chr11-52004240-4	chr11	52003748	52004748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	27.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	8.0652316929455	8.10977284291996	7.75949611713193	8.14099327306401	8.42820022707625	8.0061458799307	0.306544763353222	0.205886985743109	0.59648600119592
Merged-chr10-44272807-2	chr10	44272307	44273307	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	MTD|LTR|ERVL-MaLR	4468.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	4.5734886744558	4.71862647999657	4.97544655100076	4.65890919687216	4.40835569537589	4.51887208863854	-0.543875269142775	0.205039550395549	0.595694220420628
Merged-chr10-117899025-2	chr10	117898494	117899494	+	992.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26465.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	7.38615588379814	7.30509178822557	7.37056923857687	7.41774881143269	7.66087332354742	7.15482840620637	0.126331210875652	0.615437013284821	0.88797905622544
Merged-chr9-57640641-4	chr9	57640160	57641160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4993.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.60226228271984	5.90520077001847	6.13813822350719	5.96617773401606	6.30439434280066	6.09340841559868	0.42344296010402	0.191662034722306	0.578406157883854
Merged-chr14-46832118-4	chr14	46831605	46832605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-29.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	7.64718470371067	7.91034854408036	7.21537110000137	7.74280466462236	7.86924255094789	7.26018862226849	0.0388777557522513	0.895721008328106	0.975665889379756
Merged-chr10-99468203-1	chr10	99467703	99468703	+	551.0	f0_balb.idr	Intergenic	Intergenic	-140968.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.75095202009465	6.64172867681224	6.54116837666638	6.55690297627673	6.8282638279019	6.78044469615107	0.120551501869386	0.647080787890886	0.901171576795904
Merged-chr2-170326999-4	chr2	170326501	170327501	+	962.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29360.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.58694652893945	4.21504470214431	4.42383407098888	4.61926162111772	4.68256321887275	4.65789841102394	0.582143568625604	0.180899738447756	0.56305619831836
Merged-chr14-45685447-4	chr14	45684945	45685945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27302.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	6.21663623479702	5.96802195854927	6.03191851538082	6.56128508292565	6.80125499139301	6.27238496618102	0.817800358389088	0.00650116053309159	0.0740534867811433
Merged-chr4-83306928-4	chr4	83306436	83307436	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	RSINE1|SINE|B4	17253.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.1391184626035	3.89342612374297	3.78103579513791	3.92534080156203	4.04092668891817	3.95700911917484	0.0723588126636642	0.888144275738038	0.97401529899353
Merged-chr17-6655372-4	chr17	6654842	6655842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	CpG	489.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	8.40639439018287	8.86745557161654	8.46984305872024	8.23933338124231	8.65640186225794	8.23560854660861	-0.281251331322782	0.267683816694145	0.66495301679951
Merged-chr17-5846196-4	chr17	5845700	5846700	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	L1MEd|LINE|L1	4820.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	5.36109294039434	5.56518847323865	5.41232167623677	5.44873655599623	5.24833458781801	4.78348809140472	-0.492873106576655	0.204671056171192	0.595338437555822
Merged-chr12-65172764-4	chr12	65172250	65173250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172578)	promoter-TSS (NM_172578)	-170.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	6.54167193952362	6.90097078546601	6.84846881289593	6.9529113702875	7.03955913244837	6.86295030548956	0.288935160005235	0.270192036763408	0.667203280387572
Merged-chr13-62952835-3	chr13	62952338	62953338	+	626.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12055.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.0032465930303	3.94691028883535	4.15298821800976	3.84268482182087	3.85349655574288	3.84037289892613	-0.568671063961672	0.259444720158261	0.657025178042079
Merged-chr10-96686289-4	chr10	96685799	96686799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69298.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.03325966430772	5.45363327764593	5.80497331270807	5.63104591852785	5.72335622156753	5.93726074568362	-0.0396252965070847	0.908664026817074	0.979290949569275
Merged-chr2-168170409-4	chr2	168169913	168170913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-15900.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	5.16221548413901	5.51750782376971	5.0921061824482	5.56894278745304	5.30184201612673	5.19362313756199	0.170690555661205	0.648149448615577	0.901703040183932
Merged-chr16-12574480-3	chr16	12573975	12574975	+	730.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-236915.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	2.73697573145638	2.66306350955589	2.6086141823229	2.75685369113585	2.66630165062338	2.80775971092464	0.369620735311292	0.616954535897748	1
Merged-chr17-17624033-4	chr17	17623544	17624544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	CpG	445.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	7.43813513613688	7.60087862125619	7.83865268703182	7.4914500331275	7.6555954499792	7.77509299128739	0.0190005305815956	0.937541306345874	0.986057836872162
Merged-chr10-74104697-4	chr10	74104198	74105198	+	917.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 3 of 25)	intron (NM_001142748, intron 3 of 25)	282831.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	3.38322021021592	3.56187099359909	3.568644366271	3.34898055047369	3.56207433380743	3.73862260820236	0.178542502245107	0.761261703846961	0.941190529913343
Merged-chr7-80425714-4	chr7	80425205	80426205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20269.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	6.567033634523	6.57475512792819	6.67093501238353	6.25963862696135	6.31517534165503	6.48085083893043	-0.409449705707012	0.123684418777774	0.470659623115383
Merged-chr3-94431193-4	chr3	94430693	94431693	+	942.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357711, exon 14 of 14)	3' UTR (NM_001357711, exon 14 of 14)	5458.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	4.9806166829367	4.81744640825899	4.62953216105721	4.88095231893416	4.96273297314476	4.85947780256307	0.174767200843936	0.6584098928132	0.905014667687917
Merged-chr5-135485461-2	chr5	135484961	135485961	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	59661.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.83310560762816	4.71785628607267	4.69024418644782	4.85961497133413	4.7853802026974	5.01465971724415	0.294462767499757	0.453748119239776	0.809979841654596
Merged-chr14-27351198-3	chr14	27350703	27351703	+	939.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-10186.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.85472706057362	7.19633947817266	7.20535556666147	6.86422240923593	6.91011520466303	6.98972329467128	-0.263054624270892	0.303709145786282	0.700241918661779
Merged-chr8-128357253-4	chr8	128356761	128357761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1812.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	5.58947670181852	5.47226377965753	5.5712177898854	5.57783283716444	5.8336243617794	5.60579438514097	0.266424416605402	0.410311842920347	0.783163458863978
Merged-chr4-102605954-3	chr4	102605439	102606439	+	852.572205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16096.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.31174451613481	5.09729286627641	5.58508777896047	4.53528851239478	4.58380435759866	4.66896781787373	-1.63366459421789	5.57556879389756e-05	0.00172850941953289
Merged-chr1-84407093-4	chr1	84406582	84407582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 9 of 12)	intron (NM_152915, intron 9 of 12)	-122437.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.78733070319911	5.68486644160103	5.91333289946759	5.60228929936854	5.45563626056662	5.76024481368429	-0.351646316862911	0.273746072899919	0.671161035825814
Merged-chr4-99120518-4	chr4	99120020	99121020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	CpG	395.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	6.45817128836103	6.35159461187102	6.43245232831681	6.93531327546321	5.94178340834274	6.12651816903276	0.011284986406559	0.975504654933689	0.994508458032816
Merged-chr6-38533151-2	chr6	38532651	38533651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	8.17719748647988	8.52521884859002	8.21346095275099	8.22966017096368	8.86806907412479	8.33270402039846	0.275901221630736	0.299927678685412	0.69665807687954
Merged-chr2-39008069-4	chr2	39007568	39008568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028809)	promoter-TSS (NM_028809)	-71.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	7.02088455763775	7.21321766580951	7.03625224548503	7.07407288828646	7.18210427007315	6.8820435760432	-0.0538098001506777	0.829149072916919	0.959990063227229
Merged-chr7-139248746-1	chr7	139248246	139249246	+	991.0	f0_balb.idr	intron (NM_001098636, intron 1 of 2)	CpG	264.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	8.41760814539369	8.74085756505306	8.05278884116905	8.61418969161841	8.44906605527317	8.21615126011979	-0.00310354890834766	0.990599752948463	0.997892660866058
Merged-chr11-114996783-5	chr11	114996201	114997201	+	816.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134158)	TTS (NM_134158)	5179.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	4.46682947970544	4.3588248865918	4.7376603013503	4.64146232013675	4.32670288755086	4.61451947339277	0.0181220362540373	0.967622980332715	0.992581088872982
Merged-chr4-88033413-4	chr4	88032924	88033924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027326)	promoter-TSS (NM_027326)	-17.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.48042832985944	4.51758196481816	4.57966821052628	4.70631683693065	4.49647789264	4.29154839845721	-0.0204780197001887	0.962652285291452	0.990929979870148
Merged-chr4-9666827-2	chr4	9666327	9667327	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2335.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	2.27521162293481	2.24491279374721	2.49310139026445	2.32291057144391	2.32752623392344	2.44225190060363	0.168338703542209	0.840064657542864	1
Merged-chr3-108086373-2	chr3	108085873	108086873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	293.0	NM_028779	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	7.15286669401125	7.10315055088771	7.24751673551659	7.26080255715461	7.36317544462364	6.98586375339001	0.0856400262997131	0.729316578972944	0.930601789377265
Merged-chr7-19000703-2	chr7	19000203	19001203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145579, exon 3 of 3)	exon (NM_145579, exon 3 of 3)	-3362.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	3.82295579597293	4.01258709628483	4.28590720275067	4.18361555480575	3.8144949754909	3.94422451739066	-0.170896304886143	0.745955783105169	0.936251303305737
Merged-chr14-55794906-2	chr14	55794406	55795406	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6049.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	3.18308882202676	3.38131374985656	3.42269393220451	3.33526141695051	3.15876227381238	3.54470927786611	0.0671990033517712	0.914773255734179	0.98093269064294
Merged-chr9-48494536-4	chr9	48494020	48495020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004191)	promoter-TSS (NM_001004191)	810.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	8.48329138843925	9.1294349543399	8.44391357587235	8.45600949883707	8.76441620836107	8.07565581254201	-0.362431757224414	0.220637041366562	0.615199565226559
Merged-chr1-16669860-1	chr1	16669360	16670360	+	986.0	f1_balb.idr	intron (NM_027415, intron 2 of 2)	B1_Mur2|SINE|Alu	4669.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	3.44975561693378	3.62815138296275	3.80314077953914	3.99314898317415	3.78310232350713	3.96907973163972	0.942888171493774	0.0854329032478098	0.386952316882247
Merged-chr17-34024738-4	chr17	34024237	34025237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009066)	promoter-TSS (NM_009066)	-57.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	8.83507818363104	8.64356913093119	8.39006531900026	8.55167660849657	8.50233089134869	8.13790602482228	-0.311562167719238	0.196616306305732	0.584538002539922
Merged-chr1-37868010-6	chr1	37867524	37868524	+	777.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	4.70353280509552	4.49945161898733	4.44452086192628	4.91205926531677	4.87374082661946	4.80651797727632	0.712933765239378	0.0807268752011609	0.375953974313704
Merged-chr14-31171593-2	chr14	31171093	31172093	+	649.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 21 of 21)	exon (NM_022656, exon 21 of 21)	-2952.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	2.71994765125785	2.759930546174	3.3000363800498	3.06168998652079	2.74437763207889	3.26725098099543	0.392809531872999	0.614327443323347	0.887435546271868
Merged-chr14-27335957-4	chr14	27335432	27336432	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289687)	promoter-TSS (NM_001289687)	-105.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.06633217841144	6.11319963007421	5.95891025280507	6.23484014277392	6.07308057884568	5.78970022244097	0.00390534414469614	0.989757000968745	0.997611022725407
Merged-chr13-41015267-1	chr13	41014767	41015767	+	545.0	f1_balb.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	-983.0	NM_025387	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	3.2878861870422	3.39491537859736	3.33790567073845	3.25533019451362	3.06190573559174	3.05445556298986	-0.90077115334666	0.15947575713351	0.531714749788586
Merged-chr13-104153022-1	chr13	104152522	104153522	+	623.5	f0_balb.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25444.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	4.63030315767929	4.50109112676975	4.52630613629284	4.22725633825193	4.18704667166903	4.14268727215807	-0.964664896268902	0.0306537010193061	0.211692522094421
Merged-chr8-91377016-4	chr8	91376518	91377518	+	913.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	63493.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	4.03432965824542	4.18876062904295	4.1128838123673	4.23562921721486	3.97466477972339	4.27174418693511	0.126231286120927	0.793993016985926	0.950531747588938
Merged-chr8-115420612-2	chr8	115420123	115421123	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	286271.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.39550310484528	4.93213957420089	5.00056617081299	5.06057856941826	5.20459403469087	5.26859368226953	0.0946659557353931	0.805243756982591	0.953809918608747
Merged-chr2-127259342-2	chr2	127258842	127259842	+	581.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175145, exon 4 of 4)	3' UTR (NM_175145, exon 4 of 4)	-10887.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	3.27416060600908	3.02380296537269	3.43241320520017	3.51216425391143	3.72087662758511	3.55789064918029	1.37823435772207	0.0290951893969047	0.204837770984063
Merged-chr12-76615023-4	chr12	76614513	76615513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2|LTR|ERVL-MaLR	-67088.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.66935565023453	6.43885058250971	6.61204049023248	6.55903142433073	6.95126824560536	6.89752668599658	0.381756189482259	0.163903630761019	0.537906969644349
Merged-chr13-20111959-1	chr13	20111459	20112459	+	567.0	f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	(TG)n|Simple_repeat|Simple_repeat	21452.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.57964248410427	4.08681330783993	4.15528265432112	4.1715281685957	3.86663153074583	3.92062810523518	-0.862255741609884	0.0958665836037751	0.412774472885015
Merged-chr3-121293037-2	chr3	121292537	121293537	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1297.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	4.85533254076779	4.66799325886707	4.73341889508598	5.34155848029889	5.19399494997618	4.95882460976226	0.920277629764255	0.0174086669531782	0.147284769263984
Merged-chr7-6174635-4	chr7	6174137	6175137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146024, intron 2 of 4)	B2_Mm2|SINE|B2	2124.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	3.62157953360645	3.42470861763125	3.80941755046535	3.47628413596643	3.49702168323355	3.68353810164636	-0.246776800694916	0.66956088724648	0.909692012644768
Merged-chr5-121191421-4	chr5	121190999	121191999	+	993.53125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109992)	promoter-TSS (NM_001109992)	-102.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	7.71532929492641	7.63364750710551	7.41453435547637	7.55760698918833	7.30798480728132	7.25408433409616	-0.31838526782022	0.188700444994117	0.574222837446979
Merged-chr4-155733394-4	chr4	155732876	155733876	+	617.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-1428.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	6.99439463458643	7.04664369305952	7.20481284031382	7.33538744382221	7.76936851897416	7.01537514933299	0.509967537158869	0.0751988082262646	0.361120934662147
Merged-chr4-118179708-4	chr4	118179238	118180238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 1 of 21)	intron (NM_001161823, intron 1 of 21)	305.0	NM_172382	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	6.21553792577903	6.57989037771231	6.56690948036072	6.82646682375135	6.69037851935216	6.57464742164465	0.387142095999327	0.164431353000828	0.538979870809255
Merged-chr5-110284732-4	chr5	110284215	110285215	+	919.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008993, intron 1 of 4)	MTE2b|LTR|ERVL-MaLR	1453.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	3.75270359507056	3.71190315278181	3.91554446576301	3.70973227697674	4.02763731700596	4.03069933222211	0.444867386159279	0.399631930598451	0.775995820989774
Merged-chr15-97164839-4	chr15	97164346	97165346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	2398.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	7.3991630706192	7.43967127035794	7.47606036767159	7.41438635579456	7.52863354311232	7.45125527522237	0.045321197055937	0.838785860401524	0.962592773676812
Merged-chr5-66046759-2	chr5	66046259	66047259	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	-42474.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	3.557537780282	3.69942798271523	3.69542589603481	3.67257758322099	3.50005288208272	4.04646292406253	0.327467880387129	0.569289639122761	0.8688875602138
Merged-chr5-45855730-4	chr5	45855215	45856215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	837.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	5.32986520773925	5.03285326344672	5.0319204731351	5.38043166680722	5.12514818219384	4.90678228507999	0.0290939977673046	0.93995811066483	0.986753310597155
Merged-chr18-9494004-3	chr18	9493496	9494496	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43842.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.50211089599319	5.48937565785889	4.76271260914195	5.28209686961837	5.01852426838073	4.43862846298321	-0.695259408787234	0.402771780609288	0.778267861313883
Merged-chr15-99702502-4	chr15	99702015	99703015	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031842, intron 1 of 12)	intron (NM_031842, intron 1 of 12)	228.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	6.44334219684556	6.44648971355811	6.51779346883102	6.46580172393085	6.33486642476036	6.27611511628139	-0.168378589138606	0.528869441998861	0.850585575598857
Merged-chr14-63131886-4	chr14	63131392	63132392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	9430.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.26252770374855	8.39542617380006	7.88749623700296	8.14419514091678	8.28427760361052	7.850341049139	-0.132481473603259	0.60085226506208	0.881855262262798
Merged-chr3-96728439-4	chr3	96727938	96728938	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	827.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	7.56267441076865	8.07535755827491	7.60334551838559	7.71262950986422	8.19161588272228	7.86447869227252	0.241128106191684	0.375254613796461	0.758624025253248
Merged-chr9-53387464-5	chr9	53387013	53388013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	URR1A|DNA|hAT-Charlie	3490.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	7.61327321450468	7.57493185985868	7.42711910105321	7.59452264629898	7.70273431186418	7.56604550089984	0.116859821813827	0.601527106974888	0.881943853341137
Merged-chr4-59372881-3	chr4	59372406	59373406	+	773.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	65727.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.8537553033965	2.74497914886775	2.98961778022143	2.64332242294049	2.54707999903539	2.64084640813792	-1.40866835915478	0.0651312915463232	0.3327875042669
Merged-chr6-13599937-3	chr6	13599449	13600449	+	723.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	8149.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	4.71412842468376	4.56622418864668	4.75286402141969	4.80790774560434	4.81304261309506	4.70125250198887	0.241391839177294	0.54572945657893	0.85834429351586
Merged-chr3-90509540-4	chr3	90509033	90510033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-35.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	8.71022165361601	9.01623828395145	8.62508855577523	8.82178596449656	8.8075808327283	8.40961906179414	-0.138062441395738	0.561791183997314	0.865580593452079
Merged-chr8-94954956-1	chr8	94954456	94955456	+	569.0	f0_balb.idr	Intergenic	Intergenic	-22153.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	3.18105663758712	3.07224474256938	2.76506304702505	3.11826639995681	3.09846080806562	3.09852646404037	0.360104572835927	0.614844850132387	0.887639829057119
Merged-chr15-51449845-4	chr15	51449339	51450339	+	901.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-54229.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	4.51299794868087	4.25879371895032	3.97903211322672	4.40617100682598	4.38348192540057	4.34930974780088	0.263310818032956	0.584251995912529	0.87456162664244
Merged-chr9-95565497-3	chr9	95565028	95566028	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5711.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.90180674251059	6.96702040902641	6.67579623194877	7.29694286538639	7.40611702844825	7.18320740703188	0.665795349263703	0.00754203191062157	0.0825190520998027
Merged-chr1-72307022-1	chr1	72306522	72307522	+	589.0	f0_balb.idr	promoter-TSS (NM_009533)	promoter-TSS (NM_009533)	-399.0	NM_001357520	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	5.12637192721628	5.65329825920452	5.40586085825615	5.56993764717763	5.96487865093827	5.37456523312984	0.481830967763317	0.20641776465851	0.59705945568552
Merged-chr17-34293001-1	chr17	34292501	34293501	+	555.0	f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5230.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.57229990742759	4.51705611884022	4.11503772193246	5.01849889107628	4.95905438934144	4.44860588054137	0.975658193068516	0.0418412571069078	0.255905121048143
Merged-chr6-57534307-2	chr6	57533807	57534807	+	795.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1119.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	5.53551176546468	5.56243059890975	5.36488888194026	5.74981324790213	6.07402726960697	5.82841415015785	0.733318301035835	0.0239885941276725	0.182120706220381
Merged-chr1-132008127-4	chr1	132007604	132008604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	CpG	499.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	9.16854584269794	9.28547294708589	8.80940422750134	9.15350440673587	9.06685090533239	8.98414826188458	-0.0512167457453786	0.817426080349053	0.956767881392089
Merged-chr1-58586277-4	chr1	58585784	58586784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025597)	promoter-TSS (NM_025597)	49.0	NM_001310598	213056.0	Mm.26272	NM_172513	ENSMUSG00000038174	Fam126b	C130065N10Rik|D1Ertd53e|D630010C10	family with sequence similarity 126, member B	protein-coding	6.45522641168103	6.51868924355013	6.53936749043211	6.74883384051087	6.55550338793482	6.22828388647812	0.0554850208337308	0.844853521466048	0.963760118842549
Merged-chr17-64661518-4	chr17	64661026	64662026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	RLTR9E|LTR|ERVK	59877.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.38019509447555	5.26695638429923	5.1886284718728	5.26812741473406	5.52204424690818	5.1128154857613	0.0819925620570371	0.820377703311395	0.957629072297684
Merged-chr1-58503993-2	chr1	58503493	58504493	+	763.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008765, intron 1 of 17)	B4A|SINE|B4	1116.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	4.17591505846601	4.35745518354467	4.28879198518135	4.4922562529155	4.37499940187332	4.26480251566079	0.285260415714087	0.527295555684452	0.849915901776182
Merged-chr5-30850474-4	chr5	30849980	30850980	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11327.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	6.64497134918458	6.74480676722279	6.81414886838367	6.50205096136357	6.7000896442048	6.53588918013995	-0.228296433181162	0.37987655407756	0.762152926281812
Merged-chr4-55649325-2	chr4	55648825	55649825	+	757.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116850.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.63076955114658	2.70036664252084	2.81738748242478	2.74225517762223	2.64867433419962	3.27524092898543	0.967774185624857	0.214318960293338	0.607446165658035
Merged-chr3-65957394-4	chr3	65956895	65957895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 2 of 10)	intron (NM_019937, intron 2 of 10)	854.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.66608908304915	8.58365452276168	8.20746153079559	8.31647105646191	8.39672999521483	8.31463594491882	-0.226774236335078	0.316921055777879	0.710852534497944
Merged-chr4-55630909-2	chr4	55630394	55631394	+	668.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-98419.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.112190372801	5.06026518011473	5.08755689151771	4.91270138407406	4.7915883156852	5.33606187006961	-0.143263570044305	0.715523689069261	0.926402055104375
Merged-chr16-16438660-3	chr16	16438179	16439179	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 11 of 16)	MRLTR33|LTR|ERVK	-79648.0	NM_001360009	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	3.17218695050759	3.12096693582869	3.22841514102414	3.21545721816409	3.25135588507047	3.40921926144472	0.492413872192043	0.428896683136581	0.795570481157701
Merged-chr4-132539667-4	chr4	132539177	132540177	+	686.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	4118.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	5.19221086746869	4.87972816607945	5.1629249491232	5.11133620183932	5.19857561069921	4.86830929862822	-0.00888689540106211	0.981533641195394	0.995717195177154
Merged-chr9-41121203-4	chr9	41120691	41121691	+	805.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	36871.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.27575004632467	4.14970215499114	4.47084599701156	4.45251922754546	4.13275197203508	4.57583633828011	0.242909602652116	0.608187810233108	0.884921814563233
Merged-chr12-104749782-2	chr12	104749236	104750236	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	2216.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	3.46274045296407	3.58064484174321	3.53566967821182	3.53432263305846	3.45466775411299	3.75894287683417	0.190374372043035	0.739213071332135	0.934189741955566
Merged-chr2-166188229-4	chr2	166187742	166188742	+	895.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32559.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.05309877183137	3.75387021240101	3.88529517762472	3.6467691824564	3.96261418825883	4.00260253474444	-0.07453111310366	0.889425641815349	0.974240173857916
Merged-chr10-69212647-2	chr10	69212165	69213165	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	8.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	8.22097048290287	8.43579380954381	8.11996489817408	8.27016847070224	8.38904080009199	8.39087169944957	0.112710791824917	0.601875431371626	0.882155517668709
Merged-chr17-66518415-2	chr17	66517915	66518915	+	775.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	B1_Mm|SINE|Alu	1255.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	4.60404859350321	4.49195397764743	4.07988240971299	4.57873906176356	4.28220843454979	4.25423536401303	-0.101579466881544	0.833788364125761	0.961104751385188
Merged-chr9-56418209-4	chr9	56417700	56418700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	-150.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	7.73264368030756	7.86190588064379	7.57774250287436	7.90302468152746	8.05932540684541	7.58444813715953	0.198386805538004	0.419292791944622	0.788930112802127
Merged-chr1-138328042-3	chr1	138327529	138328529	+	848.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54291.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.71116780033953	5.68076998752102	5.80242218872929	6.11088389441794	5.95445621049024	5.91345282457912	0.479106929424068	0.110875036797011	0.444841551070303
Merged-chr17-15816888-2	chr17	15816388	15817388	+	707.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	9698.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.36007682389234	3.24707943897562	3.37482824778785	3.60082084485228	3.7681926095526	3.61334770977606	1.27332823295134	0.0291110998814208	0.204878321824686
Merged-chr18-35752275-4	chr18	35751766	35752766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11712.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	6.33465404577089	6.2821396833967	5.68595460935145	5.98729152670503	6.14812308997198	5.66009758318849	-0.318334415746797	0.363391604776651	0.748998975730879
Merged-chr9-122117325-4	chr9	122116850	122117850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164572)	promoter-TSS (NM_001164572)	84.0	NM_001357774	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	7.16038681512466	6.85173600274012	6.8866149004827	7.0816794835072	6.43123851560381	6.66491234458052	-0.342630766441328	0.251383102837317	0.648833216107931
Merged-chr8-36937740-1	chr8	36937240	36938240	+	545.0	f0_balb.idr	exon (NM_001194940, exon 2 of 18)	exon (NM_001194940, exon 2 of 18)	14702.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.18222075902542	3.14707505798219	3.19502460045884	3.03180480400252	2.64956377453129	3.09550117884261	-1.10988138093429	0.133593241025167	0.488819290786001
Merged-chr2-94437075-4	chr2	94436573	94437573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	1113.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	6.56685334730016	6.5079259037661	6.88226542439052	6.69568128835567	6.64529981618484	6.8575063814304	0.123047914076757	0.649458072843388	0.902160587683553
Merged-chr2-169779073-3	chr2	169778525	169779525	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	(TC)n|Simple_repeat|Simple_repeat	145379.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	3.75646044037677	3.54339194308901	3.69762359046543	5.26973564293101	5.11940682344051	4.58111591873505	4.00373584286244	1.35400176922461e-11	2.12975007965296e-09
Merged-chr1-136131253-4	chr1	136130734	136131734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046167)	promoter-TSS (NR_046167)	-51.0	NR_046167	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	6.58318772656355	6.99590384893567	6.54588083522152	6.77966902509451	6.92836198822913	6.60539635613288	0.0805578823856366	0.777453659510455	0.945105000485977
Merged-chr11-120526157-4	chr11	120525669	120526669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-4558.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	5.96251280294474	6.11054127058289	6.12594864606741	6.382881817146	6.46030700686746	6.5125218439263	0.642873848278708	0.0198393127200545	0.16056702001851
Merged-chr10-60752838-4	chr10	60752327	60753327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-45.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	6.32489633555697	6.64673332546096	6.85212320238609	6.86960647196461	6.69684514244429	6.49432255650523	0.130566665164243	0.654276580617303	0.903731888516984
Merged-chr17-66111617-4	chr17	66111124	66112124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-21.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	6.95924555083731	7.24290053776812	6.87650098946151	7.28886715694197	6.84301131572868	6.38311534723932	-0.212688420201397	0.509832918974059	0.840592417262638
Merged-chr9-24395023-4	chr9	24394543	24395543	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108097.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.63284792517731	3.80329471070903	4.1362260153945	3.66418338517781	3.85494454661843	4.02899562942147	-0.0360300689606501	0.948209145268252	0.988083630162243
Merged-chr1-105686870-2	chr1	105686370	105687370	+	949.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029349, intron 2 of 27)	intron (NM_029349, intron 2 of 27)	23009.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	2.92524095943885	3.26635521946408	3.06520086367297	3.0591531457654	2.91425354059607	2.95547796528036	-0.544260263793624	0.428983903070561	0.795570481157701
Merged-chr9-42124385-4	chr9	42123915	42124915	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011436)	promoter-TSS (NM_011436)	-118.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.59348271363908	2.59135520284515	2.89740647963179	2.74743589457841	2.73109709225589	2.60636455651386	0.016110381791921	0.983174729678573	1
Merged-chr6-90597675-4	chr6	90597183	90598183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7197.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	4.90755445664013	4.59537487799115	4.87374294959043	5.15887716010842	5.04403556501197	4.97602317011464	0.58911689574619	0.130135016405212	0.482328483075497
Merged-chr17-29030715-3	chr17	29030185	29031185	+	852.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1975.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	2.80631313404376	2.89560196271707	2.86823185413502	2.69359470549888	2.80839524471018	2.69254636303598	-0.626413892220692	0.388987021470637	0.768839329819819
Merged-chr16-36644423-2	chr16	36643923	36644923	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	21654.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.17867839711496	3.77066040248777	3.9718311705585	4.16815600111908	3.97554175291423	4.39746952982792	0.565047324754564	0.277011972317575	0.674339902068424
Merged-chr2-145880670-1	chr2	145880170	145881170	+	1000.0	f1_c57bl6.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-22571.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.06648606524095	4.09300775945063	4.40779949089423	3.93049952666087	3.76237591032207	4.18558747336706	-0.67185092773344	0.192569613770008	0.579601410786647
Merged-chr13-42101962-2	chr13	42101462	42102462	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49941.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	3.85655514805272	3.90126304829975	3.87165611072465	3.97762065004412	4.05930937721112	3.94146173742804	0.368643322474798	0.45932055043606	0.813583469343522
Merged-chr2-164835038-4	chr2	164834538	164835538	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 5 of 14)	intron (NM_001038492, intron 5 of 14)	1265.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	7.1529190017335	6.8951811318868	6.93271650076982	7.15842313661029	7.17256987760762	6.72781552484968	0.0683318727008343	0.799318080513718	0.952248176414355
Merged-chr12-24493606-4	chr12	24493120	24494120	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4961.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	5.94280771331732	5.8167419864135	6.02809040327941	5.85162590250591	5.61841285970177	5.5883942465553	-0.419474220735396	0.180117721083556	0.561845748300675
Merged-chr6-99205365-4	chr6	99204864	99205864	+	968.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	61151.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.94094963428924	6.72561523744808	6.73818718854131	7.15999742790157	7.15711947959554	6.8441694865942	0.400884640967599	0.120752331673341	0.464799001428292
Merged-chr3-137862774-2	chr3	137862222	137863222	+	808.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1765.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	2.80833453190515	2.67133547658218	2.83828633650034	2.75426668659176	2.67862786597267	2.78993483805358	-0.175036207264794	0.809223058287303	0.954721853010197
Merged-chr15-64001629-4	chr15	64001118	64002118	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-3552.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.44362944043261	4.80761310701385	4.34758136738704	4.49593269351168	4.1169434644929	4.27549077912424	-0.649206026769527	0.171399653593549	0.549459630327571
Merged-chr15-80132668-2	chr15	80132168	80133168	+	602.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-486.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	3.40033897488983	3.31423335981672	3.72087932249563	3.58209652367714	3.29889288220839	3.48469660171149	-0.0914002233741986	0.880790329569999	0.972620786559158
Merged-chr7-90035252-3	chr7	90034752	90035752	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	6093.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.69225181337482	6.86598379035271	6.65884426483592	6.30961962434721	6.74052321573734	6.58385561719361	-0.289481042936503	0.297686081392882	0.694429857818433
Merged-chr12-105963270-3	chr12	105962806	105963806	+	736.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-46957.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.18646988803972	3.20560224797199	3.32980495766707	3.66095048744356	3.77638922395595	3.46126504439512	1.57812835256378	0.00926855839575814	0.0955068986989775
Merged-chr5-149471436-3	chr5	149470940	149471940	+	846.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310763)	TTS (NM_001310763)	31780.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	3.1909325500133	3.23584206022052	3.17127481509011	3.59933353336882	3.49180113371129	3.6878740757613	1.52143180841542	0.0128676001390836	0.120099525784954
Merged-chr10-88439939-2	chr10	88439439	88440439	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 18 of 20)	intron (NM_001004164, intron 18 of 20)	-19648.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	2.84752783276626	3.07138081602087	3.20250017842473	3.0923616262855	3.17617192941088	3.38066657967255	0.754109386541752	0.265118758840294	0.662860627571611
Merged-chr5-115262084-4	chr5	115261603	115262603	+	929.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	10792.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	5.94825456901073	5.56763712097608	5.82092106768918	6.02847497200193	6.42157506176664	6.28089976262098	0.812589327758539	0.0102965551342778	0.102500439493126
Merged-chr15-57976542-4	chr15	57976044	57977044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9359.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	7.93506200317283	8.19140873831318	7.91729066162233	8.18591198995136	8.41577484383323	7.98124299483228	0.266860681278925	0.261788128075682	0.659587178226233
Merged-chr3-96256097-4	chr3	96255599	96256599	+	959.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7218.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	4.67198206185326	4.95681255121925	4.96640179679123	4.66510596533735	4.91610538858235	5.22143425995035	0.169066643239544	0.683759819821568	0.915479407206029
Merged-chr16-4872265-2	chr16	4871765	4872765	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7586.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	2.63449800138893	2.56077638110436	2.78010930225882	2.54637727218949	2.51376518453337	2.67245171080457	-0.466122200673909	0.542941072485145	1
Merged-chr2-49554948-4	chr2	49554384	49555384	+	969.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64430.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	3.02965231017349	2.91858451590972	3.29342737725591	3.15066335090656	2.83560907053343	3.02772280082481	-0.339953994241607	0.626454720487956	0.892916235446326
Merged-chr8-120537893-7	chr8	120537397	120538397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106159)	promoter-TSS (NR_106159)	-171.0	NR_151732	74227.0	Mm.334856	NR_151732	ENSMUSG00000102737	1700016A09Rik	-	RIKEN cDNA 1700016A09 gene	ncRNA	7.36358209004032	7.60597354252932	7.6962049762622	7.60676657154826	7.66839773893709	7.44673507316337	0.0344493555439236	0.884377000396476	0.973492101559577
Merged-chr18-90509508-4	chr18	90509012	90510012	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-642.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	6.76499114876426	7.25146166454201	7.01734023343044	7.02055518955041	7.48297747388622	7.2142995312956	0.345528621080788	0.217259726160157	0.610996579127954
Merged-chr2-170219764-2	chr2	170219264	170220264	+	773.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77089.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.44340475616694	5.19498318928758	5.31621808216334	6.15654183259766	6.13979163891694	6.15758751470913	1.50578717410695	1.69216998004816e-06	8.56981617162795e-05
Merged-chr4-134919845-4	chr4	134919347	134920347	+	890.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3778.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	6.62396992065734	6.48087819662822	6.75801119677733	6.75014696666983	7.20525676701164	7.07780174980842	0.635338728438281	0.0200613788494914	0.161750698770202
Merged-chr1-152824442-2	chr1	152823942	152824942	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 6 of 15)	intron (NM_010877, intron 6 of 15)	24289.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	2.8955788676351	2.8832822345246	3.15569179973747	2.89865614926971	2.82796356466621	3.33148121802448	0.236901427032309	0.742425848396015	0.935219340999573
Merged-chr2-30359190-4	chr2	30358667	30359667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289710, exon 1 of 10)	exon (NM_001289710, exon 1 of 10)	149.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	4.25496185047167	4.41055819737517	4.49953644554585	4.29215720076199	4.09299330327063	4.07516499726761	-0.621777157628955	0.182256584537408	0.564980474114771
Merged-chr1-45881013-4	chr1	45880502	45881502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	44592.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.62014909206825	7.44963254485493	7.47490138733786	7.46404388810618	7.52317033355669	7.51162945362372	-0.0273113990895034	0.902832269853328	0.977589531003393
Merged-chr2-166750799-4	chr2	166750300	166751300	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36968.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.89798109491039	3.54447660344275	3.60432290363697	3.82726496168186	3.99253467989784	3.43760826787879	0.279789322945784	0.642942174333438	0.899548231805501
Merged-chr3-39371217-2	chr3	39370717	39371717	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	484277.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	2.37688944330728	2.31042071890786	2.26351295739741	2.69193021167878	2.53280909800327	2.67182350256617	1.99887503243389	0.0204509320936969	1
Merged-chr13-102690245-4	chr13	102689739	102690739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3308.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	8.16550239665337	8.17685128394589	7.85965638057273	8.28568298785478	8.48733055476531	7.94878304162288	0.262365318667192	0.291282653768603	0.689011458553274
Merged-chr6-108740737-4	chr6	108740221	108741221	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-42338.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.79550241154624	3.63706723902237	3.35336364949938	3.29228638399341	3.08921376869859	3.18019536818099	-1.71072718882211	0.00823708479713922	0.087859422099777
Merged-chr2-116954604-2	chr2	116954104	116955104	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54452.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.18569897153837	4.2268877190162	4.43485242980737	4.43483858766158	3.94745022680767	4.14972288380974	-0.247271619839293	0.615284619326648	0.887866671887744
Merged-chr7-6285548-4	chr7	6285044	6286044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	7.96930114712536	8.19661963780358	7.8173859163158	7.88262980121451	8.03086211756813	7.44405854238999	-0.269634763913423	0.303813235123237	0.700294220341559
Merged-chr19-4143629-2	chr19	4143129	4144129	+	817.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_206973, exon 2 of 2)	exon (NM_206973, exon 2 of 2)	3830.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	4.45409527359444	4.45729444576291	4.62878685597543	4.44308446705777	4.12356108389226	4.69390132358663	-0.210607036348073	0.650419575358068	0.902613484298836
Merged-chr3-95659550-4	chr3	95659047	95660047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008562, intron 1 of 2)	intron (NM_008562, intron 1 of 2)	826.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.62458690080967	8.48805952686097	8.17788235942988	8.54989785286412	8.51539053867157	8.33756361659499	0.0332397245313731	0.884092202816164	0.973466734537782
Merged-chr18-66474034-4	chr18	66473521	66474521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15417.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.1921215714057	5.82985638608115	6.28359018796511	6.07400845512955	6.27935054960861	6.26601244340627	0.172811942525137	0.571125081461141	0.869382309066969
Merged-chr2-11600182-2	chr2	11599682	11600682	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3017.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	5.55224895157229	5.63768337269936	5.57332951352377	5.95878550812443	5.99763541023452	5.99248435365522	0.707914985294435	0.019154334280143	0.157054971105847
Merged-chr14-79564390-2	chr14	79563890	79564890	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	PB1D7|SINE|Alu	-23270.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	4.44436643331432	4.33469351371064	4.18744708479958	4.29041418859874	3.97459505793841	4.66932963885944	0.00406236647171971	0.993574221428225	0.998702045803685
Merged-chr7-47035625-4	chr7	47035108	47036108	+	884.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-15032.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	6.91601482475156	7.21895667546581	6.7428305643792	7.04335280503008	7.31533951783524	6.91112126839763	0.191219953946264	0.49120389602498	0.830448151501811
Merged-chr7-30664974-4	chr7	30664410	30665410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027999)	promoter-TSS (NM_027999)	84.0	NM_027999	71909.0	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	4.87465027179402	4.94573716319306	4.93118974438983	5.19606145265479	4.97069819712843	4.84464733893175	0.215464328445806	0.572533136865781	0.869854789422972
Merged-chr4-10923391-4	chr4	10922885	10923885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48887.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	5.7801839230272	5.96405703207186	6.08288321269328	5.84408645865848	6.16667196068005	5.98851361958503	0.124721036520103	0.685948880360931	0.916538830253462
Merged-chr3-107102058-4	chr3	107101662	107102662	+	943.435425	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008417, intron 1 of 2)	CpG	595.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.93831000461849	6.55917427815069	6.27951240362015	6.6331142395395	6.55606853751165	6.25705939490087	0.341843984197547	0.281715132244794	0.679800211118652
Merged-chr1-84465936-2	chr1	84465436	84466436	+	884.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-181291.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.12356576200369	3.176813613457	3.30509318083572	3.13367904949197	2.98551293641861	3.03396906232084	-0.66291080901823	0.309920218759681	0.705463568657226
Merged-chr19-4397903-3	chr19	4397366	4398366	+	963.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-789.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	6.79787528538867	6.29136153303327	6.14548366755877	6.69333248067744	6.21823645771965	6.2937172271065	-0.0527954870306476	0.873506110717139	0.970409437516545
Merged-chr16-35899149-2	chr16	35898649	35899649	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27767.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	3.43097793691055	3.82755986786264	3.71161170854455	3.94243904527936	3.93459134429571	3.88526061118825	0.816808841228299	0.138262936765797	0.496960021384664
Merged-chr18-69346645-4	chr18	69346174	69347174	+	966.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 1 of 19)	intron (NM_001361128, intron 1 of 19)	514.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.79595939643079	5.50138692816812	5.5051390286577	5.99121174607852	5.53299126664325	5.56869024449673	0.18945934456625	0.585881482978211	0.875147049575346
Merged-chr4-145214618-4	chr4	145214126	145215126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-19621.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.89022775699015	4.83910410012161	5.22082421078573	4.83719247597559	5.03804726733284	4.92090005218762	-0.0933610499692162	0.811760643422512	0.955306974300267
Merged-chr2-156719091-4	chr2	156718649	156719649	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040505, intron 1 of 3)	MTB_Mm|LTR|ERVL-MaLR	1760.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	4.99924552048016	4.72065116651957	4.86948746884516	5.07312166483081	4.91347965798097	4.93506521479292	0.235466686827421	0.541950542885969	0.857018905554292
Merged-chr6-57823666-4	chr6	57823171	57824171	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1454.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.07487756062668	5.73445864570848	6.4160043009552	6.10656201080416	6.28237213249927	6.17356187742611	0.168545380709152	0.60410206441237	0.882977174248604
Merged-chr6-29529206-4	chr6	29528690	29529690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-92.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	7.07531532803419	6.75943619911402	6.96165957793469	7.12306191437422	7.12178194619558	7.01974354855341	0.234946827107067	0.346615380906868	0.734734183510397
Merged-chr8-94704143-4	chr8	94703622	94704622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7880.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	3.89902299350336	3.90456289886859	3.46950495792213	3.57342347616855	3.73115629430201	4.10596838706561	0.123742628361268	0.835967030390481	0.961873866737315
Merged-chr6-48579494-4	chr6	48578937	48579937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-6635.0	NM_001347167	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	5.82056017059578	6.00641456826527	6.0001204099887	5.96543862890558	5.9752853064815	5.82006787951428	-0.0259308173394542	0.930799978649159	0.984692509261312
Merged-chr5-142376263-4	chr5	142375766	142376766	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25231.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	2.88018996626705	3.19478793386629	3.64477064152668	3.2203601228159	2.96026697320504	3.20412733677904	-0.579121912672466	0.425716727043505	0.793296041200845
Merged-chr10-128083175-4	chr10	128082675	128083675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-132.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	7.03318162203988	7.25754896227933	7.01299965127658	6.92276432692301	7.18973525399513	6.82525326422883	-0.169611675204859	0.514698384390827	0.843203472095285
Merged-chr3-144202298-7	chr3	144201807	144202807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161770)	promoter-TSS (NM_001161770)	25.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	5.92682648905635	6.05204593225971	6.17582873082048	6.05994119815284	6.00793933155612	6.29435887978524	0.116800450154277	0.693188329926512	0.91884092896984
Merged-chr9-109023478-4	chr9	109022989	109023989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	MLT1-int|LTR|ERVL-MaLR	-15078.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	6.38493367336107	6.33886813097722	6.51199723338263	6.23950000047554	6.16071392582299	6.52038648545911	-0.171831246854259	0.543559902645217	0.857551302506722
Merged-chr18-84589735-4	chr18	84589224	84590224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-220.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	7.8989730682328	8.25144112944958	8.0717065476361	7.95598942990365	8.23458034164626	7.92631215609278	-0.0441334310775732	0.851314839607255	0.965211450762173
Merged-chr11-79871334-4	chr11	79870842	79871842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91045.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	8.90616921395185	9.11816367663717	8.56746425365941	8.67901048640367	9.16374040665799	8.34556751738251	-0.143847385235879	0.615107719322084	0.887772023929758
Merged-chr5-64281749-2	chr5	64281249	64282249	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 9 of 18)	intron (NM_001289514, intron 9 of 18)	51392.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.66148703227475	2.71571355069849	2.93343001952864	2.59523236654702	2.73957849086434	2.7727414109402	-0.351505580289954	0.63799542392753	0.897380718500389
Merged-chr6-145120217-1	chr6	145119717	145120717	+	639.0	f1_balb.idr	intron (NM_001281980, intron 1 of 18)	RLTR20B4_MM|LTR|ERVK	-1522.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	4.83589345217616	4.97241913666031	4.89975342389931	5.29098346312579	5.36557071272971	5.24527804915466	0.837532572917326	0.0201531103814473	0.16231175296791
Merged-chr6-97403110-2	chr6	97402610	97403610	+	732.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56176.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.23751117562681	4.30782360434169	4.52966212471367	4.7072906333676	4.39187870861766	4.42866669949103	0.410641026360599	0.361044252792945	0.747007352397798
Merged-chr5-98031156-4	chr5	98030660	98031660	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133738)	promoter-TSS (NM_133738)	-198.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	5.43525824117599	5.43006080183647	5.0969836052972	4.38300582025753	4.19775682259037	4.79996518515582	-1.98953292255097	4.76861126981702e-06	0.000212754212621413
Merged-chr7-12964613-2	chr7	12964113	12965113	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1225.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	2.93526243344674	2.73703157658669	2.84957458089169	2.77703550379152	2.77010505139232	2.98130916653546	-0.00790273822195596	0.991180946681389	0.99819885759976
Merged-chr9-47653501-2	chr9	47653024	47654024	+	611.0	f0_balb.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	123172.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.84073797232171	6.13361437604431	5.98883046637404	5.34701224217147	5.23040405796467	5.25908843067023	-1.33588104276521	4.36184066274138e-05	0.00141111989838797
Merged-chr17-6961766-4	chr17	6961260	6962260	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147155)	promoter-TSS (NM_147155)	-604.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	4.70633455369466	4.58715797805818	4.30076786092623	5.53252030223704	6.22094590377281	6.06823432848645	3.01889786211191	0.00124877169690753	0.0214302828953895
Merged-chr17-35835902-2	chr17	35835402	35836402	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011655, exon 4 of 4)	exon (NM_011655, exon 4 of 4)	2399.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	2.84855867967205	2.77150953711168	2.75857045432182	2.79548674760228	2.66375867652379	3.00821412102539	0.146870806824203	0.840751304538163	0.962819298477451
Merged-chr4-44014404-2	chr4	44013904	44014904	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	1754.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	5.4070326535266	5.51342509201488	5.25858742333994	5.79395739856446	5.50808544379345	5.80818074859567	0.558647174451133	0.0989304211969253	0.419390793099336
Merged-chr14-62245630-5	chr14	62245202	62246202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47277.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	7.13925220808407	7.01885882706236	6.95021262269287	7.12275917483151	7.03978537956035	7.04915545402133	0.0429203254248301	0.857675266898041	0.966785186918462
Merged-chr9-40804791-1	chr9	40804291	40805291	+	541.0	f1_c57bl6.idr	intron (NM_031165, intron 8 of 8)	U14|snRNA|snRNA	3518.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.1453736027887	4.88230749528817	4.86199351263517	5.4552706472642	5.42812388403918	5.28738310827843	0.858552151741733	0.0186436677611322	0.154343080993761
Merged-chr8-92855416-4	chr8	92854931	92855931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	98.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	7.8112906045412	8.01301529107757	8.19936259993406	8.18773070509798	8.29521172348527	8.15789125881936	0.288686435151921	0.198399407223022	0.586736489771581
Merged-chr10-127575705-2	chr10	127575187	127576187	+	572.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 24 of 88)	intron (NM_008512, intron 24 of 88)	-41128.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.94023060097594	4.15348742429912	4.18621206842438	4.06082361785217	3.97672670087352	4.33852350272991	0.0850342708292836	0.863551101237838	0.968269312109804
Merged-chr2-3427785-3	chr2	3427328	3428328	+	822.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	3697.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	4.71962233616258	4.64146147991732	4.86780177983103	4.68649329225861	4.60375745306991	4.89689837970217	-0.0340676768787207	0.933368726515795	0.985421880379249
Merged-chr3-109323983-4	chr3	109323445	109324445	+	874.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16738.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.88584975135749	3.61575714532278	3.48826580901621	3.55725368031543	3.42254537380567	3.86767650573588	-0.202993412139099	0.733974789514785	0.932325051544019
Merged-chr5-117359653-2	chr5	117359147	117360147	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	2342.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	3.95745736726176	4.2075998670048	4.33161958598808	4.04439193523429	4.04955637622044	4.22775524266065	-0.181016346944353	0.710831492894336	0.924506861819103
Merged-chr5-121427379-2	chr5	121426879	121427879	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 15 of 23)	intron (NM_172722, intron 15 of 23)	25095.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	2.02261061960899	2.20150268391576	2.0449244668054	2.19248147013878	2.06892366384139	2.32024430705261	0.721593133678485	0.430850560330889	1
Merged-chr13-42053913-2	chr13	42053413	42054413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	1892.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	5.67249290728594	5.59197821058335	5.28501532019192	5.54661861969982	5.46328401588047	5.24705510655656	-0.201888813979834	0.562160393820051	0.86560636450104
Merged-chr15-6390260-2	chr15	6389760	6390760	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	3512.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.31197748104268	5.34169789603172	5.68117088148713	5.26658888730174	5.2361405732536	5.39371805199049	-0.293179485648977	0.403992613390994	0.779216907163603
Merged-chr18-57583664-3	chr18	57583159	57584159	+	634.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-31262.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	3.8883164554314	3.62021013715268	3.920229313673	3.66712670238504	3.65869285082935	4.03376405568053	-0.0745304288907904	0.892718583268545	0.975146620821922
Merged-chr12-3426080-4	chr12	3425545	3426545	+	857.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172421)	promoter-TSS (NM_172421)	702.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	6.80368619645789	7.27381561295189	6.90263567510357	7.08028630629716	7.32644068718145	6.85583306738683	0.145144118358176	0.6090405032269	0.885053989692691
Merged-chr12-11196416-3	chr12	11195900	11196900	+	998.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131084, exon 3 of 5)	non-coding (NR_131084, exon 3 of 5)	8102.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	2.69984349264258	2.48510550557178	3.08340507396814	2.80687071404959	2.44541586559736	2.42081314237423	-1.10488834316431	0.20885854008994	0.599958314648662
Merged-chr16-44779600-2	chr16	44779100	44780100	+	776.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13864.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	6.50367625271057	6.77065464908979	6.35098774617924	6.42684671866747	6.36507109025804	5.98349303722982	-0.451926815484674	0.135159847468326	0.491294119824757
Merged-chr17-70990117-4	chr17	70989612	70990612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	404.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.73969752235848	8.00359590462501	7.95382061133207	7.78730875026698	8.05647336389108	7.88649531542849	0.0218885081283174	0.923527199449686	0.982720998667572
Merged-chr2-60279819-2	chr2	60279319	60280319	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	MLT2B1|LTR|ERVL	4665.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.7007736650773	3.35737366650974	3.91375967605036	3.57166105309722	3.59132497361779	3.84289352578504	-0.00297203490555028	0.995999628969872	0.998961028701257
Merged-chr8-120572775-4	chr8	120572289	120573289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 11 of 16)	exon (NM_198671, exon 11 of 16)	16286.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	4.42878239262571	4.41072909913769	4.73220473420711	4.21794545043878	4.15946558037485	4.18475758209143	-0.886836940578087	0.0527458031366079	0.293904291662149
Merged-chr1-144245898-3	chr1	144245369	144246369	+	964.892883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 4 of 4)	intron (NM_015811, intron 4 of 4)	3235.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.06568173801737	6.27330537770011	5.67577373530906	5.61879760219398	5.54531697195672	5.73870938843784	-0.734430021844275	0.0271960622308957	0.196400793795207
Merged-chr10-23197739-2	chr10	23197239	23198239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	152151.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	2.0831607744464	2.10728375794506	2.17862852801098	1.80082539209109	1.8845875249844	1.91972164679875	-2.29208187271472	0.0305244921784395	1
Merged-chr12-100052307-2	chr12	100051807	100052807	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-60024.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	5.19032927090218	5.07962575623878	5.23631207322219	4.76968753344663	4.72946676039493	4.8976871035048	-0.812506800144154	0.0305336935100611	0.211280463167165
Merged-chr12-21369185-4	chr12	21368677	21369677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	(CAGA)n|Simple_repeat|Simple_repeat	4455.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	7.09808323526978	7.06939155753218	7.2726052294463	8.2473953428273	8.54888039607378	8.00825910516519	1.65852508298702	2.22461816337042e-11	3.39022029556274e-09
Merged-chr5-12206171-4	chr5	12205669	12206669	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176997.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.33465914634375	4.3440439094984	4.29338707620966	4.20458180810787	4.25350031818663	4.56758603324481	0.041861731772918	0.926986271171712	0.983578869536024
Merged-chr11-77216834-5	chr11	77216301	77217301	+	900.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	376.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.66690340615453	4.58824805899436	4.41014562631568	4.59437324029324	4.64411000547993	4.56624715758544	0.0904104716833243	0.829396128202707	0.960038854218416
Merged-chr19-3905566-7	chr19	3905072	3906072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016921)	promoter-TSS (NM_016921)	-342.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	6.75736416220708	6.56707805207454	6.74618436203213	7.13889917809524	7.12010795025993	6.86607559484165	0.562464682070872	0.0274091157566753	0.197367795619689
Merged-chr7-34913342-2	chr7	34912842	34913842	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	PB1D10|SINE|Alu	935.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	5.42944962383078	5.58734805524371	5.43153008767985	5.4380731157746	5.34208455090123	5.13302646099172	-0.331020105170954	0.335642399246843	0.725783075793434
Merged-chr1-57429903-4	chr1	57429367	57430367	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23193.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	3.08622707160395	3.47423084407039	3.01435850060019	3.08434960448984	2.89499242664056	3.14943776080689	-0.743811174942412	0.287370399697848	0.684650023087306
Merged-chr11-96074492-2	chr11	96073992	96074992	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007506, intron 2 of 4)	intron (NM_007506, intron 2 of 4)	1139.0	NM_001161419	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	3.03056383890095	3.03675766174747	3.01612241512658	3.11102839807875	2.80856715773074	3.25924956761204	0.171299355559179	0.805093962663611	0.953787743121181
Merged-chr10-86976573-2	chr10	86976073	86977073	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	31369.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	3.77798616058949	4.00608100409146	3.62173198014069	3.54762169545809	3.64505672034509	3.84978482385324	-0.452954899340757	0.418631189070896	0.788726823651631
Merged-chr7-126703155-2	chr7	126702655	126703655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009898, exon 2 of 11)	exon (NM_009898, exon 2 of 11)	1065.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.39349167295861	4.54807225719706	4.65353334025153	4.2772892247096	4.44808153677912	4.71846317217789	-0.112432780352042	0.800773231252537	0.952697697308098
Merged-chr4-48278780-3	chr4	48278296	48279296	+	700.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	793.0	NM_029572	76299.0	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	6.18726957940628	6.00808819576073	5.72970426397342	6.07879618242808	6.05406966578771	5.19040582983706	-0.25424396704111	0.521185473574678	0.84693755135567
Merged-chr15-59802556-4	chr15	59802057	59803057	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7598.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.01884535733945	4.02562900685594	3.86490077295897	3.95387027051824	3.87051214091449	4.26109212721834	0.155157177866212	0.761456570528431	0.941258867861232
Merged-chr3-51710831-3	chr3	51710371	51711371	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	49692.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.18856774038634	4.02174445211214	4.49122751537935	3.86714103342895	4.04107545872499	3.94935227633318	-0.805941462034575	0.114002269091598	0.450886303830234
Merged-chr16-23307645-4	chr16	23307139	23308139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17169.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.14504602171618	5.79263235983504	6.13650389492727	5.86582644135386	5.68785667445031	5.83626065510589	-0.416218721646875	0.184187422406223	0.56784629064474
Merged-chr2-72848637-4	chr2	72848131	72849131	+	904.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34914.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	4.33335098517485	4.67072602730248	4.24930081624997	4.73362146653504	4.80304790808416	4.55252721427111	0.639413841460795	0.153765972576866	0.522858730489425
Merged-chr7-102020071-2	chr7	102019571	102020571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1916.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	6.98511860663101	7.24426426692777	7.15089819288955	6.77173696504785	7.04796476093926	7.05875566790849	-0.250695497820374	0.32406432727063	0.717287790132387
Merged-chr3-16180234-2	chr3	16179734	16180734	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17C_Mm|LTR|ERVK	-2931.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	5.55506815006581	5.35390882854128	5.51915498731928	5.0673022425812	5.38820639072198	5.82981658577961	-0.0391752656401665	0.91810850912503	0.981747877135909
Merged-chr9-57234012-4	chr9	57233553	57234553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2503.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	5.18303582393778	5.11101760579687	5.12171874075083	4.93376113361362	4.60795033367602	5.01711660784261	-0.625387340244574	0.107099029950471	0.436731001427041
Merged-chr11-46875837-4	chr11	46875351	46876351	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65052.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.48158670597685	2.59331976124236	2.37246043661548	2.5526848260463	2.43169940600685	2.64215479475982	0.305683624663381	0.704989879503677	1
Merged-chr8-10899881-4	chr8	10899397	10900397	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-25.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	6.12127013916526	6.24376057053149	5.86655697819128	5.6792172611212	5.53324815124063	5.30623363668308	-1.02530789375214	0.0018319729866208	0.0288592972871532
Merged-chr4-63391459-4	chr4	63390954	63391954	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	6786.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	5.42219413100272	5.43792201358848	5.65005846074841	5.40584811806915	5.37746740952072	5.13919210816827	-0.346202624790291	0.315937396917958	0.710146362792292
Merged-chr8-46868419-4	chr8	46867919	46868919	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-118468.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.44060681816662	6.65490143259565	6.78479668426906	6.27180309351017	6.3075655063449	6.59946295839911	-0.38120186910541	0.177069899060211	0.557884930520031
Merged-chr5-35585112-2	chr5	35584612	35585612	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 2 of 18)	intron (NM_030721, intron 2 of 18)	2078.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	4.80161716679704	4.87333609701758	4.59806457267251	4.64731155847519	4.42404480785775	4.66508501895616	-0.46422309040743	0.265971696663908	0.663816339302633
Merged-chr16-4680331-2	chr16	4679831	4680831	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-611.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	5.71626477015213	5.46802060042931	5.28657898344471	5.39860544069596	5.82216873531773	5.13701027491266	-0.0146802141033366	0.969832704834848	0.993228629675783
Merged-chr17-5571976-2	chr17	5571476	5572476	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	79376.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.39858612854678	7.11920831636974	7.49900897961204	7.11499548387821	6.9723975002724	7.31137494164502	-0.315488283162916	0.219852404183194	0.61423936831415
Merged-chr2-161041099-2	chr2	161040599	161041599	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67987.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	5.3677526061475	5.54857447675108	5.4565223715585	5.57013579189241	5.80279626640528	5.5779378499418	0.380541021718408	0.246950022405749	0.644045601901006
Merged-chr10-117764805-4	chr10	117764315	117765315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 19 of 27)	intron (NM_134010, intron 19 of 27)	-18457.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	5.17235806939054	5.0360517059443	5.03570992139266	5.46986669721751	4.9987817796782	5.13617435373838	0.268655404814218	0.478963387506092	0.823939232913004
Merged-chr11-63897966-4	chr11	63897490	63898490	+	837.946411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	24294.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.12595595215453	4.28586635141132	4.3976480487145	4.90936631417348	4.71102318203708	5.45299652976053	1.85715775000135	7.56577042885845e-05	0.00224192530571387
Merged-chr7-122256850-4	chr7	122256363	122257363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32262.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.88865423729239	6.0736570953978	5.99171777093954	5.60206642032725	5.74868851198983	5.8908879934129	-0.427199228029327	0.163695457635422	0.537749158771312
Merged-chr10-99929399-4	chr10	99928912	99929912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-86409.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	5.13381826579392	4.99749561323846	5.31167117402894	5.28405563894926	5.5514606074958	5.40489333124586	0.560511416102395	0.115174464038776	0.453031899581093
Merged-chr17-5730780-4	chr17	5730241	5731241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67916.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.81934509605051	5.7114983195034	5.45626904530283	5.30010757036475	5.12387591306433	5.23113371154499	-0.89910578505234	0.00871380136200297	0.0915246129423811
Merged-chr5-96923651-4	chr5	96923062	96924062	+	919.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	2290.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.93403020846226	5.97302491217375	6.13507561722077	5.78508292503413	5.76592234440711	6.11307100793133	-0.219019376877464	0.47719858859082	0.823210601639195
Merged-chr11-94386496-4	chr11	94385997	94386997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	6479.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	7.13996747532157	7.19220630687931	7.00026700811626	7.33686681943699	7.26986120026107	6.75230987194503	0.0586782886588392	0.829872127605464	0.960134151531511
Merged-chr3-16210121-4	chr3	16209631	16210631	+	919.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 5 of 5)	intron (NM_172677, intron 5 of 5)	26966.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	5.00870780368351	5.4305525228848	5.64196527493999	5.16122789616609	5.3967625656859	5.40784902635904	-0.100299083463973	0.79230213050845	0.949929758256028
Merged-chr8-120686269-4	chr8	120685760	120686760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17940.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	7.18432921483562	6.93007488773208	7.1128627262425	7.05997313828088	6.91054950212906	6.82702430994786	-0.21360829243645	0.39396416319003	0.772025390139564
Merged-chr7-97748343-4	chr7	97747864	97748864	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10117.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	5.93230655817774	6.09311072090224	5.96252890411533	5.86049098918604	6.32157689233365	6.11407724077553	0.206144256451692	0.50439344833245	0.837664432515541
Merged-chr2-11552480-3	chr2	11551975	11552975	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1454.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	5.6429488224616	5.65902521029384	5.6358048326796	5.45316346141003	5.16630420984476	4.98735691840187	-0.818511703911827	0.0202157557944079	0.16258918153833
Merged-chr7-12921822-4	chr7	12921343	12922343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-468.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	7.35521101298595	7.41947537474984	7.62909060152436	7.77866889179794	7.81553946136054	7.76467163642669	0.465953141047014	0.0380596920175616	0.241492873084892
Merged-chr7-126799816-2	chr7	126799298	126800298	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-544.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	8.66415920225503	8.6888240402921	8.35994536782573	8.19693696829952	8.65057610618766	8.3612683996985	-0.224465095372361	0.34600932732778	0.734487066881322
Merged-chr10-61374308-4	chr10	61373835	61374835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	9188.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	4.42547013363966	4.50840267115973	4.82669401694852	4.92370085316562	4.84964394732149	4.8185009492566	0.654266641171013	0.112705520622943	0.448425976142792
Merged-chr17-8225376-4	chr17	8224866	8225866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10677.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	5.38699659437911	5.29301047765151	5.25993356000625	4.76251283644264	4.84760415879577	4.91282906510599	-1.01220698796044	0.00568043505530036	0.0669961219109046
Merged-chr12-54981145-4	chr12	54980656	54981656	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	MIRb|SINE|MIR	5180.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.92682518855735	4.77710596800362	4.44749654917368	5.34344837988246	5.05811235535084	4.66092409895661	0.688612745536669	0.123682583179763	0.470659623115383
Merged-chr5-90366179-2	chr5	90365679	90366679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	6.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	8.50302702602323	8.30686587826243	8.09787848456143	8.46822965448603	8.03789103436827	8.11817589689082	-0.132806001223193	0.58705783896753	0.875769926947203
Merged-chr5-123904336-1	chr5	123903836	123904836	+	665.0	f1_c57bl6.idr	Intergenic	Intergenic	-2939.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.72937319587531	3.66852907345728	3.55644359207874	3.09213916733613	3.04491660628459	3.16620882992092	-2.39765873135046	0.000283257498551427	0.00663923660266681
Merged-chr15-66803902-3	chr15	66803398	66804398	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27931.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.32307669041339	4.19754864228782	4.32129443303468	4.20460362917778	3.87642354559986	4.16548542498219	-0.555915519480945	0.249171217103228	0.646134245609601
Merged-chr3-108850773-4	chr3	108850276	108851276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10274.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	5.33256279487501	4.80510432902901	4.72150346398526	5.26480800258475	5.60394824730179	5.24817392507786	0.803076883997752	0.0533466570117858	0.296062738387025
Merged-chr2-4652121-4	chr2	4651608	4652608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356451)	promoter-TSS (NM_001356451)	27.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	5.33623596977059	5.93565353172052	5.75956759233327	5.78185856706933	5.91028288256612	5.60517172825854	0.138864239621674	0.691830127434528	0.9184939224729
Merged-chr7-90043654-4	chr7	90043175	90044175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	14516.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.12413517000141	7.13118951084903	7.01519539665856	7.0389698820137	7.40608873057806	6.77712317091962	0.032947344627453	0.905350323068758	0.978279198518346
Merged-chr6-124756179-4	chr6	124755713	124756713	+	868.744446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007881, intron 1 of 9)	G-rich|Low_complexity|Low_complexity	274.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	4.86617014850703	4.37518239174655	4.56305100892808	4.61831373715804	4.06945862398598	4.41671154433454	-0.587085055714681	0.226166133246238	0.621140322788657
Merged-chr1-144005836-4	chr1	144005315	144006315	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1666.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.8705257545437	7.25899054694898	6.99030292724219	6.91194207344981	7.53360320546489	6.96421932692317	0.191806386018605	0.51938252777863	0.845812337242475
Merged-chr13-98955848-3	chr13	98955400	98956400	+	815.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	28665.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	6.61406735408554	6.59334893114068	6.61613843071146	7.03832401489288	7.2909655343313	6.82179434173408	0.725715000918194	0.00619134594756041	0.0713531182277849
Merged-chr5-45385069-2	chr5	45384573	45385573	+	664.5	f0_balb.idr|f1_balb.idr	intron (NR_131933, intron 1 of 5)	intron (NR_131933, intron 1 of 5)	39327.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	3.25111911634048	3.10098253579868	3.77134049889079	2.75431005432851	2.85182803119	3.31673505351487	-1.64514086458655	0.213746739092738	0.606900020244801
Merged-chr6-115995691-3	chr6	115995192	115996192	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-687.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	7.30092885648387	7.22283991069101	7.17229205709668	7.17711127646742	7.43186548506334	7.11591750910482	0.0336295640467158	0.890071104766334	0.974384755359924
Merged-chr11-29779191-2	chr11	29778691	29779691	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 26 of 41)	B1F2|SINE|Alu	46477.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.38179636149249	3.32589723912596	3.48041013695902	3.44236696905762	3.51148114758068	3.75282599884534	0.650495986895832	0.26670056874276	0.664172509867066
Merged-chr6-134064304-3	chr6	134063800	134064800	+	753.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	28600.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.62873277621745	5.6006051240303	5.82066772817692	5.54485411077972	5.80625428464455	5.78422480207076	0.0724155664154252	0.821144627834604	0.957942312428027
Merged-chr3-19895672-3	chr3	19895125	19896125	+	793.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027985, exon 1 of 1)	non-coding (NR_027985, exon 1 of 1)	754.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	5.02533006151814	4.81828483749628	4.81524809136991	5.02339035995882	4.6057800395297	4.68055408466056	-0.249235053531367	0.544643126557698	0.857872186786783
Merged-chr2-14074564-2	chr2	14074064	14075064	+	871.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	464.0	NM_011484	20844.0	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	6.29353554819225	6.28406396755445	6.43949668232453	6.41318843967379	6.37115123473965	6.04567800833429	-0.0635139367773454	0.82423922628151	0.958523256704056
Merged-chr1-72107287-4	chr1	72106787	72107787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102092.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	7.32688477251713	7.42715881703142	6.78338629193598	7.39170138899115	7.50952332904535	7.1383218017966	0.209270308711284	0.461948314041556	0.815107818354545
Merged-chr9-70585385-4	chr9	70584889	70585889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152142, intron 15 of 19)	intron (NR_152142, intron 15 of 19)	42674.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	3.47505108660906	3.51272106718131	3.43115810763504	3.52547648533983	3.38971702074204	3.60954487116241	0.108493331098757	0.850759450263158	0.964981271430729
Merged-chr4-132474800-4	chr4	132474296	132475296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10875.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	5.19064268501881	5.7094080847707	5.42301433158281	5.12541728906247	5.07146754705604	5.10074076622323	-0.732253683774239	0.0481797070967451	0.278290963594292
Merged-chr11-106082494-6	chr11	106081920	106082920	+	846.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2482.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	5.00830209049019	4.84329925230282	4.84133318066059	4.71505172896287	4.99302193816992	5.21144312659604	0.173765095038461	0.662965267449589	0.90692994613967
Merged-chr11-50147275-2	chr11	50146775	50147775	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 5 of 20)	intron (NM_029745, intron 5 of 20)	15915.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	1.9503645483833	1.95665074069443	2.21668903820699	1.88571452565285	1.82243984675614	1.96553222963124	-1.28901077554781	0.190632046516343	1
Merged-chr3-148982528-4	chr3	148982086	148983086	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27951.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.85654154426808	4.707524960825	4.86801120595748	4.17583721678695	3.97163722284547	3.86261027547646	-2.11744149427583	1.18929435428872e-05	0.000464159496396135
Merged-chr18-46613395-4	chr18	46612898	46613898	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15694.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	5.71211207671893	6.16003101349976	5.29443858676371	5.37503679866352	5.41178367923696	5.36002627865973	-0.748937984882975	0.0494788061367235	0.282827118089699
Merged-chr7-27491899-2	chr7	27491399	27492399	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4946.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	3.94077321529122	3.86596372265923	4.42565322370288	3.87390111350736	3.7083199793981	4.12778067336988	-0.55014421961954	0.316755031077543	0.710764053338553
Merged-chr17-31108571-4	chr17	31108062	31109062	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 9 of 14)	intron (NM_009593, intron 9 of 14)	21049.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.46593944492989	3.32141349518944	3.46721766991082	3.14719657722833	2.90417892204653	3.63729627332806	-0.603937972930624	0.392612376991408	0.771214636708298
Merged-chr11-68548598-4	chr11	68548100	68549100	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 18 of 19)	intron (NM_001004435, intron 18 of 19)	-7586.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	3.61182154858896	3.54620861533041	3.54974467234396	3.72367635032952	3.55296989174976	3.45119079792837	0.0469473080269779	0.933906195704049	0.985647726181411
Merged-chr2-166978572-2	chr2	166978072	166979072	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	B1_Mus2|SINE|Alu	-13855.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	6.04933627802841	6.49055384527261	6.08409161566543	6.31537632208336	6.53164646546673	6.12241595694179	0.185169484131457	0.553338200423813	0.86224512118178
Merged-chr17-50736079-2	chr17	50735579	50736579	+	856.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285991, exon 23 of 23)	exon (NM_001285991, exon 23 of 23)	37398.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	3.08399802279571	3.22688037201204	3.62420336607622	3.9462761751935	3.54353255195198	3.74586424315726	1.57732473090041	0.0149146352379826	0.132121470124779
Merged-chr3-88335197-3	chr3	88334707	88335707	+	908.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024246)	promoter-TSS (NM_024246)	-774.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	4.73329377353444	4.37582625530623	4.71508931239907	4.61769532586958	4.69163663067425	4.85369183853539	0.251290566873961	0.5539354816258	0.862575362378324
Merged-chr4-53156617-2	chr4	53156115	53157115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	3280.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.10088703799133	8.45313664816069	7.87941957155842	8.18346839631408	8.58961726349748	7.93547624378945	0.140707826094661	0.614732737438544	0.887600696218698
Merged-chr17-74429938-2	chr17	74429438	74430438	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	intron (NM_001033367, intron 8 of 8)	29170.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.7590501375827	5.10113149245551	4.58325548995233	4.55971718968452	4.70357185475273	4.56388485766446	-0.528600019277972	0.218613697110077	0.612741862631882
Merged-chr4-132308639-4	chr4	132308128	132309128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029468)	promoter-TSS (NR_029468)	-50.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	7.74367388166798	7.6651450302375	7.52581497725228	7.83118484316392	7.97004867926257	7.58261365199931	0.230872306768614	0.327583944399055	0.719793584677403
Merged-chr2-93943214-3	chr2	93942707	93943707	+	733.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13893.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	2.66343861984816	2.74012660989949	2.78596394561705	2.70417178448529	2.60482052280812	2.67399035989904	-0.379496124562705	0.607213467120327	1
Merged-chr6-134034443-2	chr6	134033914	134034914	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.82689851286365	5.60151571275908	5.42581411918352	5.76034800342911	5.76590405077829	5.66719696884377	0.175788666773288	0.589745621231898	0.876999741964957
Merged-chr7-97108310-3	chr7	97107805	97108805	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	26554.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.02705004444017	5.05136053110831	5.17389342706873	5.09212093107687	4.70759270429503	5.14150586432269	-0.211471304427981	0.587109969236957	0.875769926947203
Merged-chr3-86894666-4	chr3	86894168	86895168	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	26216.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	3.32896613225851	3.45136709024928	3.40473270835474	3.09974317925915	3.22053564945724	3.00218422482334	-1.15746790101232	0.0775177303947774	0.367380264890849
Merged-chr13-23556591-2	chr13	23556091	23557091	+	720.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145713)	TTS (NM_145713)	1559.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	5.90835394704538	5.91557801165353	6.21122164710389	6.22012846890453	6.21930986276986	6.25134434538472	0.377554061282361	0.192960097035409	0.580072303612641
Merged-chr2-150981562-4	chr2	150981070	150982070	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	27828.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	3.87224222841021	3.56735407435477	3.73298280737583	3.83226929731131	3.4677959413478	3.58870580651672	-0.315663630725788	0.580847862936177	0.873107245217778
Merged-chr2-38479736-4	chr2	38479249	38480249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-31948.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.46065115884124	5.20406323549486	5.27509259822912	5.04484095383145	5.0071770060596	4.96096807319203	-0.647303135240546	0.0732979762000395	0.355717421657819
Merged-chr3-137611347-4	chr3	137610845	137611845	+	807.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12327.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	3.88328927911156	4.12885569905497	3.68667546336633	3.76618639731679	3.7429631084855	3.758464260094	-0.528296879795858	0.328396182369763	0.720562985671201
Merged-chr6-149193761-4	chr6	149193258	149194258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-5046.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	6.51461814934125	6.27209169058924	6.58888757371694	6.59114766528304	6.92611139732147	6.89024847995912	0.560183573222986	0.0426805134734332	0.2590531887882
Merged-chr12-32215318-4	chr12	32214824	32215824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6675.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.66825097267312	4.03843440432074	4.51453357425759	4.14506182304275	4.35931317312675	4.37295293342256	-0.355322454626604	0.473475072952421	0.82090428702971
Merged-chr2-129600003-3	chr2	129599481	129600481	+	774.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	4519.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.98244397937477	5.48311622472021	5.97713206603331	5.86344314823855	5.68346509036873	6.01576677354594	0.0423060471601918	0.900830167362682	0.977003338338462
Merged-chr11-114973041-2	chr11	114972535	114973535	+	737.625	f0_balb.idr|f1_balb.idr	Intergenic	RLTR44C|LTR|ERVK	-12618.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	4.26082517055754	4.63790504259617	4.29096434390843	3.48442963126662	3.74060020084269	3.6449466471028	-2.41978662952111	2.55560121608508e-05	0.000901426307706685
Merged-chr10-26375202-8	chr10	26374676	26375676	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	43.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	5.93435992725484	5.26703014769625	5.80735973116572	5.87254869902215	5.31497618083473	6.10874612297769	0.179679301038172	0.655393708751159	0.904253611535387
Merged-chr15-5243708-3	chr15	5243206	5244206	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008965, exon 1 of 3)	5' UTR (NM_008965, exon 1 of 3)	481.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	5.13135211773897	5.21500245033124	4.99762856828951	5.71175695249296	5.54045363357125	5.46842964979645	0.891531910827391	0.0102882306178625	0.102461172142561
Merged-chr2-147022210-4	chr2	147021719	147022719	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	9220.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.68735285602806	4.70458647592849	5.27037450264546	4.94955279459765	4.68194158562836	5.06135323830281	-0.00908696705306947	0.983262295146644	0.996253047922773
Merged-chr13-103917348-2	chr13	103916848	103917848	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	3238.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	4.2883246658597	4.30070040092951	4.2190923079222	4.30458534600132	4.21253635866971	4.4188586162161	0.0930847159881004	0.83685763362391	0.962001762335242
Merged-chr11-106751655-4	chr11	106751162	106752162	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271372, exon 2 of 7)	exon (NM_001271372, exon 2 of 7)	436.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	8.37282920123369	8.40812393910484	8.11784942172826	8.33910010181761	8.73853431184408	8.221842679434	0.209409959205713	0.392297767262246	0.771084322357427
Merged-chr19-29383578-4	chr19	29383076	29384076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	16138.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	7.0696427948504	6.94747189865311	6.76799592589401	7.41181659753373	7.6052643317217	7.01018706370895	0.654345780313583	0.0172984838484479	0.146575584934995
Merged-chr10-88334132-4	chr10	88333634	88334634	+	958.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22941.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.61055975846798	6.65686309043278	6.55141217993137	7.05421828953769	7.05280005400173	6.83851393382205	0.596917775815584	0.0177532274096702	0.149258416318464
Merged-chr11-87466219-4	chr11	87465721	87466721	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	ORR1B1|LTR|ERVL-MaLR	38630.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.99765331420332	4.05917632628976	3.70620251450652	4.09933100102274	3.789143947396	3.93943341756793	0.0231031354847324	0.96525506795119	0.991840962282624
Merged-chr4-57948121-4	chr4	57947616	57948616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8295.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	7.80167192882069	7.90766520157756	7.36746111970118	7.51926040746596	7.65590579465713	7.1374908540488	-0.370663614241807	0.179705370570778	0.561264490202252
Merged-chr4-136123599-4	chr4	136123080	136124080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20242.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.61113141619619	7.203051376374	7.41081728572287	7.70458798623238	7.64935264335566	7.42493443056972	0.267627854922725	0.281122604579606	0.679298669431098
Merged-chr5-146811223-3	chr5	146810726	146811726	+	837.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16270.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.12314376531738	6.1232595347917	5.98701031171112	6.31524070954969	6.46024476714889	6.22772568097772	0.43676169091739	0.121718528672858	0.466747561353573
Merged-chr19-28658700-4	chr19	28658185	28659185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	L1MC4|LINE|L1	-19539.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	5.54461469092175	5.5026980578388	5.75505512390456	4.63843416423353	4.67473913238191	4.82830134048348	-1.87197279445449	5.78036131046207e-07	3.34008544389533e-05
Merged-chr7-88287872-2	chr7	88287372	88288372	+	621.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311790, intron 3 of 3)	intron (NM_001311790, intron 3 of 3)	9787.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.87066603950558	4.96672856250106	4.75304834066682	5.03090291313523	4.88946810311541	5.00749562111201	0.218522512003195	0.567216049823341	0.86786152057997
Merged-chr6-58661162-4	chr6	58660671	58661671	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 2 of 15)	intron (NM_001355477, intron 2 of 15)	64499.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	2.17753489138845	2.1822747047372	2.50594038001849	2.17210213738215	2.23117209621761	2.13181528813106	-0.768759975502059	0.392900285637544	1
Merged-chr4-53125626-2	chr4	53125126	53126126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34269.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.61926773936505	7.51688711521508	7.48973017850362	7.66552825685884	7.8420385779666	7.53645560375258	0.217024806643179	0.344348021589109	0.732985225622911
Merged-chr13-43785198-4	chr13	43784708	43785708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289915)	promoter-TSS (NM_001289915)	96.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.2796057257442	8.36252598273692	8.16661984935032	7.86632571793946	8.0462148049569	7.66602565554863	-0.561721680817978	0.0137085078479717	0.125051404848364
Merged-chr2-44923327-2	chr2	44922827	44923827	+	781.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61705.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	6.98023966039571	7.54316824908484	7.0025454282095	7.23365689093455	7.77058486298563	7.11573638760327	0.304892832699682	0.327621488848882	0.719793584677403
Merged-chr2-25592013-4	chr2	25591523	25592523	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-11924.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	3.70874404104835	3.96062325266694	4.08266223385784	3.74174774969651	3.92338510155346	4.34925715569281	0.308403502874077	0.577575269895006	0.872148719828391
Merged-chr17-27858933-2	chr17	27858433	27859433	+	746.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	2426.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	5.35939916745224	5.05627323864746	5.3682767788446	5.81753053937893	5.83218389897911	5.23289979311208	0.772520098545589	0.0383489765142358	0.242454345247058
Merged-chr5-53194621-4	chr5	53194127	53195127	+	917.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	18825.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	5.11750388945036	5.02108052248136	5.01624613250776	4.7072508828385	4.61107919204618	4.74870165128629	-0.831416083791186	0.0307369757565667	0.211999525758654
Merged-chr12-3872663-2	chr12	3872163	3873163	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-10419.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	8.00812496595	8.12802343130489	8.08580677567662	8.11615092411125	8.23614870537343	8.17562989388643	0.145940540728673	0.480551134402569	0.82456640734475
Merged-chr13-35940643-1	chr13	35940143	35941143	+	575.0	f0_balb.idr	Intergenic	Intergenic	-27263.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.12506143461626	4.33800398047016	4.4560850908509	4.05448023580171	4.12712804972626	4.13325560812906	-0.558909326733607	0.238325024611069	0.635016933187338
Merged-chr4-123353675-2	chr4	123353175	123354175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199137, intron 91 of 92)	intron (NM_001199137, intron 91 of 92)	-10423.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	3.01577756778331	2.99197725312844	3.02719405909619	2.79464322269686	2.97764409682165	3.09878548368668	-0.237110928947648	0.729529485200419	0.930635866770147
Merged-chr4-62330072-1	chr4	62329572	62330572	+	782.0	f0_balb.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	30524.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.45801063257911	6.90948962004436	6.43304257729522	6.50852952879796	7.04595526603129	6.51197945558791	0.15619133177429	0.623039671779935	0.891251075175817
Merged-chr4-142065572-3	chr4	142065072	142066072	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	MIRc|SINE|MIR	-18726.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	3.89368923431611	3.91322734867091	4.12027410503471	3.99074960898906	3.90032305621627	3.90381976008215	-0.122318299943795	0.807412563631069	0.954557080558103
Merged-chr9-48558887-4	chr9	48558400	48559400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46223.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	6.33933986504077	6.19065298776367	6.28783309118357	6.00140345873393	5.71483313661683	6.18996998573394	-0.519576901375861	0.0879238768849317	0.393468252059807
Merged-chr6-108873956-3	chr6	108873454	108874454	+	634.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54B|LTR|ERVL	45313.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	2.34666023347355	2.39679274455832	2.45142596494132	2.18775506637698	2.26648225820213	2.20129975336472	-1.22564605575896	0.159399250991918	1
Merged-chr19-38054475-3	chr19	38053995	38054995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-489.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	4.92131418655254	4.6524460913096	5.16382138678395	5.16344740007165	5.53544445468546	5.3213019337633	0.911027660367488	0.0199071874556382	0.160942552483209
Merged-chr11-121706622-4	chr11	121706127	121707127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4200.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.7779657664673	6.73775833603593	6.16878098859216	6.3917272544544	6.47597323818165	6.20742649826854	-0.375245530570583	0.22167191210525	0.616473143798583
Merged-chr16-18813770-2	chr16	18813270	18814270	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011672, intron 1 of 11)	intron (NM_011672, intron 1 of 11)	1476.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	3.16244942505566	3.05165377268886	3.09363324006451	3.33477193921205	2.96549362671674	3.22505926830202	0.330001549504316	0.618689252146928	0.889501430542404
Merged-chr18-50014739-4	chr18	50014235	50015235	+	961.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-16249.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.46175870111996	5.5137626627516	4.99608680504207	4.85186159572996	4.97057710516407	5.02504481679243	-0.843078582226652	0.0279899169762659	0.19989571811528
Merged-chr15-99045086-4	chr15	99044605	99045605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-10069.0	NM_001163588	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	4.27691036809751	3.67237576620098	3.45488495191284	3.601471563129	3.8482901128101	3.70769999696903	-0.415632433989247	0.509725715412349	0.840498936388386
Merged-chr16-57217693-3	chr16	57217205	57218205	+	783.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	13761.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	4.60757386421156	4.53515095131759	4.61984489376511	4.88783735927162	4.76392326829387	4.80427913184849	0.545056009582136	0.172334538609921	0.550866746903857
Merged-chr10-85874182-6	chr10	85873685	85874685	+	823.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	2354.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	4.50759391964353	4.47139742565133	4.67937945410688	4.42882932711878	4.58247333558385	4.2776448960376	-0.255888152328843	0.561142048527914	0.865407801976397
Merged-chr6-72101108-4	chr6	72100589	72101589	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3481.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	6.74168449731899	6.82683619352024	6.67678998526582	6.9947446697115	6.85204510902123	6.27599663969284	0.00509678961335372	0.986405576047977	0.997033990984076
Merged-chr9-83573274-1	chr9	83572774	83573774	+	696.0	f1_balb.idr	intron (NM_172507, intron 1 of 3)	B1F|SINE|Alu	24936.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.84382240507811	3.09594462200065	3.21946361200274	3.04906897342647	2.95392513579875	2.94385438177085	-0.341262964291277	0.621471790793057	0.890731629804646
Merged-chr5-139288963-1	chr5	139288463	139289463	+	556.0	f1_balb.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	35466.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	5.37440098819941	5.37422266954262	5.44349112620077	5.37186526813833	5.48589801322579	5.44764831053985	0.0836944853184766	0.800088325886933	0.952408432552781
Merged-chr11-77980839-3	chr11	77980331	77981331	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1985.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	4.72605296658797	4.89336609313602	4.78656008334203	4.68537775912389	4.7796007987068	4.81417858207339	-0.10571486025033	0.788251075054307	0.948908830222811
Merged-chr2-147010366-4	chr2	147009852	147010852	+	695.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2647.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.5532466510453	4.44409663989471	4.70056192095029	4.65826166210884	4.65218558751486	4.83915261624064	0.361442000973849	0.382914726073791	0.764341334464389
Merged-chr19-56704534-2	chr19	56704100	56705100	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17772.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.0340996658241	4.63646971681838	4.88428495545296	4.90913973564211	4.78799480508418	4.6773699132217	-0.142562354208221	0.72697168322516	0.930086065338964
Merged-chr19-8944894-2	chr19	8944390	8945390	+	813.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011842, intron 3 of 17)	intron (NM_011842, intron 3 of 17)	2970.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	3.93610581850309	3.8871856499226	3.98350547002783	4.10079082736669	3.86258926803111	4.3590495364802	0.524265072942796	0.306827120911242	0.703091920100449
Merged-chr8-34744377-3	chr8	34743883	34744883	+	955.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63227.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.62885155063733	3.52906428180417	3.93689372831041	5.49262066253315	5.49046841043935	4.87862357053047	5.01433677065849	2.08180411551293e-14	5.29733201356574e-12
Merged-chr12-73967851-3	chr12	73967353	73968353	+	811.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	3323.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	6.25369278429709	6.41916665666325	6.55702138597211	6.52550572370344	6.35805732236455	6.46040733526539	0.0618888172286284	0.821614458683595	0.958023303204974
Merged-chr13-60358901-4	chr13	60358399	60359399	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153428.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	4.72874623897184	4.68370785039564	5.01011861455337	4.74870671325964	4.71179924259749	4.63366790418752	-0.237794822388626	0.558364609637807	0.864644955334959
Merged-chr9-108307906-2	chr9	108307406	108308406	+	870.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313961, intron 1 of 5)	intron (NM_001313961, intron 1 of 5)	1109.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	6.8862951946266	6.84151140536793	6.72399123127642	7.11659834089042	7.25004045827022	7.00505818047209	0.476846387049132	0.0536825769440803	0.297035500888618
Merged-chr2-181409792-4	chr2	181409278	181410278	+	947.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028125)	TTS (NM_028125)	14610.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	5.1041141995786	5.40656731535239	5.2680545581074	5.39896747016485	5.54845213227371	5.16395704144661	0.249396344035585	0.490351667413005	0.830042606694236
Merged-chr18-39369569-4	chr18	39369069	39370069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 21 of 21)	intron (NM_001361073, intron 21 of 21)	117676.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.3832307597352	6.19578405260642	6.47642233156782	6.3744989013056	6.28895540678022	6.41064432508337	0.00796082892978743	0.977000175055793	0.994769134402338
Merged-chr17-37050490-10	chr17	37050052	37051052	+	948.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019439, intron 5 of 22)	intron (NM_019439, intron 5 of 22)	4586.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	3.33907931460268	3.29521901806733	3.30533054468662	2.90126539894675	2.86804428561315	3.02994588328242	-1.80455326523924	0.00835088123046355	0.0887191930047982
Merged-chr16-44138353-4	chr16	44137853	44138853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	906.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	8.66882711700228	8.8311984027029	8.47440109282312	8.60232997098471	8.97495264309753	8.53517337881517	0.0754775230219458	0.749866158715125	0.937463855381525
Merged-chr11-97412996-3	chr11	97412475	97413475	+	883.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37185.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.8169121296183	4.92786060420663	5.04964396287109	4.73316347859185	4.58438837152083	4.79833893136003	-0.521548712348775	0.187907158712496	0.57324945415763
Merged-chr11-110372774-4	chr11	110372288	110373288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26314.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.41151697259279	6.66931502767157	6.05588609435529	6.81416818932581	6.72141757737641	6.166352392503	0.308653779598899	0.353043393635155	0.74042924884689
Merged-chr2-122569300-2	chr2	122568800	122569800	+	627.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	41977.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	3.69667691844081	3.66519781949439	3.63122808251697	4.37824009674827	4.22118289291271	4.47146098994857	2.09422710900313	6.2788595249394e-05	0.00191514422049545
Merged-chr6-92092250-4	chr6	92091771	92092771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347342)	promoter-TSS (NM_001347342)	-162.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	7.98984838997333	7.93709132537728	7.95553855781394	8.12638301258127	7.83044286634355	8.04829373758854	0.0615631221911902	0.778886439325985	0.945559341758022
Merged-chr11-114906352-2	chr11	114905852	114906852	+	965.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	16311.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.46312521834141	5.96619629736127	6.43433990796533	6.02558991282105	6.07129552593217	6.56004256963862	-0.118396229753369	0.720966716171219	0.928324696220711
Merged-chr7-12977194-1	chr7	12976694	12977694	+	674.0	f1_c57bl6.idr	promoter-TSS (NM_001168561)	promoter-TSS (NM_001168561)	-654.0	NM_175558	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	4.68359789367806	4.439848861699	4.75636329013205	4.44167439789105	4.80822985618717	4.89260182979539	0.233762297580139	0.589654666682866	0.876939185846215
Merged-chr11-115696788-4	chr11	115696293	115697293	+	817.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	2741.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.00515474580346	6.89567571314488	6.78895486972192	7.33350748587031	7.56129261236753	7.04059870499996	0.656459902866415	0.0130381110495689	0.121160949766867
Merged-chr13-3782707-4	chr13	3782196	3783196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21622.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.4049916148695	4.44105059375748	4.43374895743745	4.27789173007417	3.87406551243006	4.65503158441603	-0.334979359644256	0.511204166528768	0.841331921585713
Merged-chr3-87910063-2	chr3	87909591	87910591	+	624.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3241.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	5.93634289348466	6.17254923374829	6.20196585771463	6.19793666025591	6.35514315980681	6.28211562000532	0.299291167839078	0.295681019811672	0.692594271218355
Merged-chr4-103104120-3	chr4	103103633	103104633	+	705.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	intron (NM_146254, intron 1 of 16)	10166.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	4.21405214828332	4.64522832253099	4.53301442096183	4.61380504163413	4.83059827960429	4.55812268691061	0.491821280920764	0.26976616213802	0.66686579973798
Merged-chr1-134560534-6	chr1	134559985	134560985	+	912.744446	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152895, exon 1 of 27)	exon (NM_152895, exon 1 of 27)	307.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	4.99861915230303	4.9957635688017	4.69067761607855	4.89316645831527	4.48449218398965	4.4465688216508	-0.649800247561014	0.132169319262529	0.486197270886281
Merged-chr14-67146795-2	chr14	67146295	67147295	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74324.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	3.6397134849981	3.69040752306607	3.71194823038928	3.84130586557891	3.56410112069984	3.45053455811928	-0.162033361678992	0.774960711965003	0.944517829695789
Merged-chr5-32937648-2	chr5	32937148	32938148	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170567, exon 26 of 43)	exon (NM_001170567, exon 26 of 43)	73927.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	6.39261802550739	6.39623104439174	6.51485227538565	6.6421745096682	6.91019509198358	6.59160160503494	0.479981163569488	0.0741852174049924	0.35827808851282
Merged-chr11-77196967-4	chr11	77196473	77197473	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8005.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	3.71639627227674	3.31120240727013	3.58947832437831	3.22494619212102	3.29292686874271	3.39148086996955	-0.944690502269853	0.126652691172313	0.475595257221969
Merged-chr7-100944455-4	chr7	100943965	100944965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-12304.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	6.37351802384592	6.51150159237307	6.29968081888157	6.29561779178535	6.4855470660921	6.25737468510683	-0.0736805308239343	0.790328195342553	0.949379633857815
Merged-chr13-95883063-4	chr13	95882580	95883580	+	798.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	8842.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.28332407859995	5.53014044013674	5.25069937952204	4.97535222089395	4.78834415438024	5.1858129675289	-0.8024424563761	0.0325160750278343	0.219307576470457
Merged-chr19-17346489-3	chr19	17346108	17347108	+	966.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-7103.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.57196169472671	5.63017068421528	5.14799834814108	4.95972845809398	5.36852137181462	5.3780460182867	-0.445642167468753	0.241184971018029	0.63836549989656
Merged-chr12-81860881-4	chr12	81860356	81861356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	CpG	826.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	5.81060303970713	5.67668305896383	5.3041370945933	5.87474869361161	5.31255101548718	5.43505818020753	-0.110884752293384	0.766971853032329	0.942573703853445
Merged-chr6-148352675-3	chr6	148352123	148353123	+	822.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	-2033.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	3.389770563743	3.39864407505384	3.5893290855282	3.08000735687229	3.01661377963764	3.29160219572608	-1.39266560650939	0.0309171656187698	0.212818954070698
Merged-chr2-22748186-4	chr2	22747668	22748668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26159.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.88196364637364	6.62694157504524	6.9435618013038	6.76654798065428	7.07148582343202	7.04113405844194	0.229463328444741	0.385618233851181	0.766611444326582
Merged-chr9-7347353-4	chr9	7346828	7347828	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-46.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	4.73387794564392	4.65824317177194	4.42268582468952	3.98053777577884	4.02565498785155	4.16775553197839	-1.52147413161663	0.00108138345295616	0.0191405561271168
Merged-chr16-57499595-4	chr16	57499073	57500073	+	794.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-49669.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.27284305226165	4.08805303317798	3.92941930949921	4.49083210473157	4.37792899810023	3.83072332327354	0.441551506165511	0.410756084448176	0.78361591427629
Merged-chr2-14324839-4	chr2	14324318	14325318	+	966.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 25 of 29)	RLTR16B_MM|LTR|ERVK	-63580.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	4.33132639095002	4.36207770958214	4.26784926668502	4.09827159402372	4.10372778926007	3.8317903559959	-0.830209573803385	0.0884233913541374	0.39466998165375
Merged-chr7-101386104-4	chr7	101385655	101386655	+	920.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027180, exon 2 of 30)	exon (NM_027180, exon 2 of 30)	629.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.46328716314384	5.10932634204246	5.34615176987327	5.35877986271405	5.20554435955764	4.92298533739653	-0.26172772675582	0.487223733781696	0.828373410665021
Merged-chr11-54859501-2	chr11	54859001	54860001	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029327, intron 1 of 4)	B3|SINE|B2	1090.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	3.02855107451747	3.13687997221478	3.0730893437483	3.14626464989885	2.89555725987413	2.96358133519217	-0.346736992502516	0.606534718322301	0.884156564218602
Merged-chr5-17998104-2	chr5	17997604	17998604	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 3 of 7)	intron (NM_001081143, intron 3 of 7)	35534.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	2.25231451134708	2.32257230761643	2.47068714860288	2.13943587240429	2.27696649966775	2.48270055082592	-0.293336833376934	0.73614202085437	1
Merged-chr9-59760746-4	chr9	59760263	59761263	+	943.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	9589.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	6.11142430044642	5.78713241234194	5.73304694287513	6.26353426626431	6.07564549365934	5.99968079525867	0.386796178202147	0.214787406324632	0.607977993080214
Merged-chr8-105362095-4	chr8	105361558	105362558	+	871.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081332, intron 12 of 15)	intron (NM_001081332, intron 12 of 15)	-13323.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	3.73801161985317	3.9165151144496	4.13670814967606	3.81623480385812	3.43870874179691	3.73410632960474	-0.86855408216514	0.124629639085737	0.472306664538883
Merged-chr9-65074900-2	chr9	65074400	65075400	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 17 of 20)	L3b|LINE|CR1	-26586.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	5.1629820912063	5.46823477633265	5.38019500188452	5.01499597518562	5.14319929525898	5.29273990559078	-0.391276131247215	0.278501879187309	0.675693502548916
Merged-chr14-57718394-4	chr14	57717843	57718843	+	764.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	16075.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	2.61761895364044	2.6520755917604	2.85542063358925	2.85747016894491	2.7446295322779	2.92790066026494	0.705662573643235	0.335303124591556	0.725445341558912
Merged-chr17-27165610-4	chr17	27165122	27166122	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173027, intron 1 of 5)	intron (NM_173027, intron 1 of 5)	2142.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	3.78530171652434	3.44200771512089	4.00510369610732	3.81096669735446	3.75609287827789	3.93530746082995	0.244011923619277	0.666548180678822	0.908277369567879
Merged-chr6-120899944-2	chr6	120899444	120900444	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 3 of 5)	intron (NM_007544, intron 3 of 5)	16880.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	1.90395314623084	1.92396058604578	1.96601677366303	2.11875982266163	2.11067712209629	2.30780412749663	2.05138012827271	0.0358254986156895	1
Merged-chr16-15986766-1	chr16	15986266	15987266	+	682.0	f0_balb.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	99480.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	4.45587357872106	4.79229723725182	4.69599513670956	4.83882872168611	4.51994549871915	4.8732242430825	0.207959020632684	0.627018408722352	0.892988961867358
Merged-chr4-150606574-2	chr4	150606074	150607074	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	45600.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.49292357141379	5.3413016751043	5.34975337829233	5.38959296674073	5.51740581699821	4.67996359184242	-0.269577075234653	0.521721022899669	0.847186270857377
Merged-chr2-124579470-4	chr2	124578994	124579994	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-30802.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.77718617925569	3.75180956294529	3.82897153767085	3.81063377263195	3.57983671597329	3.69302149772379	-0.298364394171519	0.577473989427831	0.872148719828391
Merged-chr3-108788255-2	chr3	108787755	108788755	+	826.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48597.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	2.96682468371211	2.89155153872696	3.27621626743868	3.10381329624575	3.28700778504755	3.00144212707909	0.407530184712983	0.55562398242907	0.863289501518253
Merged-chr2-71873129-4	chr2	71872562	71873562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172665)	promoter-TSS (NM_172665)	-162.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	5.9904009203207	6.0818211630923	5.95742136738803	6.42274708408788	6.40021212177668	5.99475209154833	0.479750821390461	0.108342960646852	0.439708476504755
Merged-chr15-59829942-4	chr15	59829460	59830460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35001.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.70273343167653	5.69997933789809	5.59018594984162	5.86042585588442	5.74629401665984	5.95748787932701	0.325881407536002	0.29200390398499	0.689253845324812
Merged-chr10-127609835-5	chr10	127609345	127610345	+	954.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	11303.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.40174164244773	6.32223070202081	6.64799340915047	6.13643563087765	5.88071002350012	5.8375287426522	-0.834413886858138	0.00517129924345242	0.0625881407198821
Merged-chr9-119402025-4	chr9	119401517	119402517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-161.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	6.1174973157993	6.22508567010683	6.32272266650999	6.39435778508145	6.42934680655958	6.24296567499592	0.241277153351691	0.383585321375229	0.76494131641868
Merged-chr12-4151209-4	chr12	4150707	4151707	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	17054.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	5.50828808759911	5.81582953961559	5.82877567191799	5.32024532550106	5.31806725220199	5.10203495855399	-0.886138698747825	0.010705746032681	0.105433035375467
Merged-chr13-58067927-4	chr13	58067417	58068417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	MIRc|SINE|MIR	34511.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	7.37922028657151	7.74563633155166	7.47754641886482	7.41227158245476	7.56904739466588	7.3288621581377	-0.147864206781887	0.545943295840082	0.858454745360878
Merged-chr8-82398317-4	chr8	82397818	82398818	+	800.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	4268.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.35487157485664	6.25376704244266	6.22081131629015	6.86193708533963	6.41502352838275	6.45993943655632	0.51233194720411	0.0766954656100427	0.3648548569253
Merged-chr2-37970163-4	chr2	37969706	37970706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	193957.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	3.57421849081868	4.02169217679187	4.28239055281124	3.83076451141418	3.59526106391212	4.63695888798107	0.343041532134211	0.728501491969592	0.930478966998914
Merged-chr1-105780595-4	chr1	105780088	105781088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-135.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	5.65463489722746	5.78718741769222	5.90516769009821	5.83377451125332	5.90167923327268	6.1594629188976	0.327282541810041	0.292903573219468	0.690053425164737
Merged-chr9-44213693-4	chr9	44213201	44214201	+	943.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	20345.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.46199470989097	5.49391736027114	5.49559655853462	5.01973537313753	5.00006067054005	5.05393596283272	-0.935510359167493	0.00685979276799788	0.0769673188564681
Merged-chr11-59807613-2	chr11	59807113	59808113	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146018, intron 2 of 12)	intron (NM_146018, intron 2 of 12)	1988.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	2.13224339613546	2.06067589676438	2.40658816979435	1.83903037415994	1.8892547146272	1.96490823090181	-2.7405334256211	0.0129398189920149	1
Merged-chr9-69992244-1	chr9	69991744	69992744	+	593.0	f0_balb.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	2778.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	5.30350334959936	5.44396942894598	5.74674385090878	5.45383635711308	5.42947682014095	5.89909216656791	0.188290448009644	0.602825825543438	0.882397657327329
Merged-chr9-90060492-4	chr9	90059996	90060996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007801, exon 2 of 12)	exon (NM_007801, exon 2 of 12)	6229.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	7.90565613887966	7.86705945400813	7.3527615215062	7.58057187299183	8.05231298346608	7.57310320733739	0.033658319641976	0.90435271811554	0.978131323042371
Merged-chr7-120205757-4	chr7	120205241	120206241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 1 of 30)	L1MB5|LINE|L1	1777.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	6.12113146278715	6.51065011248864	5.96643000245885	6.02592134984105	5.97216179102555	6.05153291841933	-0.370618604745322	0.234645774475328	0.630760120158631
Merged-chr15-12206774-4	chr15	12206338	12207338	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	1810.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	3.2329462870082	3.09314218808271	3.07756654827653	3.47017201062511	3.49322682955538	3.27522451545316	1.15030147653344	0.0698925952907396	0.34616008503931
Merged-chr6-15758677-4	chr6	15758165	15759165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38004.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	6.65012612827684	6.79515877263546	6.61448697497679	6.52343551600042	6.6265014086281	6.70589089134374	-0.11954266033633	0.64378821833233	0.899990653857957
Merged-chr1-87007902-3	chr1	87007398	87008398	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 14 of 21)	MIR|SINE|MIR	82030.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	4.09210566288628	4.18786549912337	4.39362047571585	4.26558721475397	4.38960529448691	4.04677703080656	0.0786590313501172	0.869781956597381	0.969901645415424
Merged-chr12-8675645-2	chr12	8675145	8676145	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030723, intron 1 of 20)	intron (NM_030723, intron 1 of 20)	964.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	4.47590765174244	4.99082440155127	4.90866879006524	4.73006456659873	5.16327507463486	4.90117701359339	0.311434800555579	0.470863683381007	0.819784379107259
Merged-chr1-85236264-1	chr1	85235764	85236764	+	851.0	f1_balb.idr	Intergenic	Lx5|LINE|L1	34302.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.89978914759994	3.01912031603501	2.99789358293952	2.51641922583367	2.45267614256706	3.33682315382598	-0.372217776326003	0.830302032595121	0.96024589325867
Merged-chr6-66538075-3	chr6	66537571	66538571	+	897.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 3 of 5)	intron (NM_001355624, intron 3 of 5)	2850.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	3.39034382220526	3.59677731782222	3.49880974065957	3.69486721576508	3.77487204568888	3.51406393497595	0.6093086541706	0.287183141614044	0.684501141432867
Merged-chr1-92906959-4	chr1	92906479	92907479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-10.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	6.50257753624354	6.72485494088323	6.46592616794482	6.89746752798596	6.96174726037407	6.79676834729566	0.493634167028934	0.0576439635901719	0.310087853789179
Merged-chr10-80603046-7	chr10	80602532	80603532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	CpG	150.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	7.47518319146003	7.29579014532984	7.21006639881915	7.39074554355201	7.63009445038898	7.26759296809486	0.163237835029533	0.50901088089154	0.84018602216273
Merged-chr7-67242184-4	chr7	67241684	67242684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19568.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	6.90401211176693	6.64626671633853	7.01432276930525	6.78599251610975	6.83722904909334	6.82420549734502	-0.0628076378373017	0.808414643799464	0.954683711776353
Merged-chr9-114394921-4	chr9	114394426	114395426	+	896.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4214.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	4.94119875909249	4.86349801859644	4.05735378280197	4.83975963827554	4.68242065633083	4.80123179497689	0.271906079843117	0.762421631437213	0.941561416958418
Merged-chr7-3664349-2	chr7	3663872	3664872	+	877.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027203, intron 1 of 3)	intron (NM_027203, intron 1 of 3)	1468.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	2.88913192625238	2.88379587162743	3.27286426419345	3.09890772881987	3.16318243935574	3.1794500222473	0.569104528116819	0.404704254271397	0.779791650050306
Merged-chr12-4915694-4	chr12	4915200	4916200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1653.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	5.14982530076054	5.30569542705949	5.28479447805135	5.43334593193901	5.5236875163265	5.37982430218031	0.404704696409216	0.232937860568822	0.629295243578263
Merged-chr6-136980523-4	chr6	136980016	136981016	+	941.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25993.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	3.210053378729	3.00223844652439	3.08445877830749	3.37366983006121	3.58943431239851	3.45123241116812	1.54340084989831	0.0163343788561567	0.140917677124219
Merged-chr1-151927562-3	chr1	151927104	151928104	+	860.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	B1_Mur1|SINE|Alu	162716.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.10521221737425	5.24038332440455	5.06414995168659	4.57103715635668	4.89308403766257	4.83924091055056	-0.791381374085369	0.0428879933716072	0.259611825437559
Merged-chr15-64278295-4	chr15	64277795	64278795	+	918.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	34378.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.19624571466842	5.29618181428156	5.20276373272768	5.33349467496311	5.41452509485679	5.8372949348385	0.588043007768738	0.102638646655112	0.427236732425048
Merged-chr7-19824333-4	chr7	19823830	19824830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	7.55676036032897	7.60093840874015	7.47905700018041	7.60587280498708	7.76255396935648	7.47348388721992	0.112411259901327	0.622987977774191	0.891251075175817
Merged-chr6-13607801-5	chr6	13607228	13608228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	CpG	370.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	8.81072551133653	8.88869619525845	8.53851932550799	8.41598376894419	8.75941137480396	8.55114374574216	-0.237433805083471	0.293033024663296	0.690102227900588
Merged-chr14-66190503-4	chr14	66189992	66190992	+	933.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	23332.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.75926394945593	4.85987625261355	4.7681442714488	4.84507426878191	4.80396252691355	5.23812267783414	0.368298646421351	0.359653041927738	0.745986895820202
Merged-chr7-45463504-2	chr7	45463004	45464004	+	897.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	3394.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	3.12426706904579	3.53157033883607	3.4888406828126	3.30599214947373	3.11454335458344	3.5587667586097	-0.233347649418332	0.721823498748785	0.928606209603791
Merged-chr6-120175985-1	chr6	120175485	120176485	+	720.0	f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-17838.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.90152470547521	5.85211216244555	5.79766278875343	5.49902331228816	5.07168542777478	5.48265738755901	-0.94024170545059	0.00572508843156196	0.0673699841908369
Merged-chr11-83639235-3	chr11	83638773	83639773	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10105.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	5.27074343834521	5.49473574280496	5.12568726616544	4.97390246976777	4.82460997109843	5.01407134363102	-0.800575595457884	0.0317121714941951	0.215968764584137
Merged-chr18-36733825-5	chr18	36733373	36734373	+	977.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1197.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	6.13667450030084	5.9303551276404	6.35635329685874	6.28130471656938	6.60822324824407	6.8942049543096	0.768737459656212	0.0143060924198733	0.128634248765163
Merged-chr11-50430977-4	chr11	50430478	50431478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172557, exon 1 of 18)	exon (NM_172557, exon 1 of 18)	133.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	8.87120899147787	9.26936705589491	8.6086211305403	8.88167814124575	8.78798505757529	8.35867651334984	-0.344096716579083	0.199536950377844	0.588073196863232
Merged-chr3-97230352-3	chr3	97229874	97230874	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3010.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.25882234347444	5.34295800412554	5.73031784899142	6.03650750502442	5.80673056502368	5.79213375975006	0.8101829809883	0.0166925496590431	0.143294508617523
Merged-chr8-117363333-2	chr8	117362833	117363833	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	14163.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.19084340564842	4.08934255892075	4.15802131495356	4.46554253922317	4.22497792261314	4.08002879348563	0.343532728969089	0.469549705507189	0.818977178978635
Merged-chr12-110485714-4	chr12	110485202	110486202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-37.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	8.51342024583488	9.25857702632228	8.85089789645945	8.70564829363195	9.20683151226686	8.69558387722308	-0.023994341332945	0.932004384908478	0.985027383295414
Merged-chr17-34588396-2	chr17	34587896	34588896	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010929, exon 30 of 30)	3' UTR (NM_010929, exon 30 of 30)	-1410.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	5.52076520467035	6.04939354902053	6.04328039422498	5.8944316342058	6.18746278623312	6.16681765036433	0.346247176983925	0.298200728914605	0.694997737442112
Merged-chr8-123041251-4	chr8	123040737	123041737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1047.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	7.79306918873374	7.9104003999485	7.92819848747172	7.92219069103114	8.01702746451461	8.37203681488951	0.335905912594582	0.153218494517132	0.522050878005875
Merged-chr4-8645711-3	chr4	8645213	8646213	+	780.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44693.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.95929122399115	4.05242785598667	4.09483061960562	4.07179703564108	3.7762392310882	3.92242469142189	-0.329170857515493	0.514160452262344	0.842965219805014
Merged-chr1-34473227-4	chr1	34472759	34473759	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 13 of 14)	intron (NM_011206, intron 13 of 14)	13513.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	6.40955691993266	6.81037711103443	6.7767082575059	6.83263427794083	6.94775268353792	6.9356689634162	0.360054563667449	0.179432602351946	0.560971531728926
Merged-chr19-12794229-2	chr19	12793729	12794729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	intron (NM_053009, intron 1 of 10)	1894.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	6.15643976041726	6.54713059380294	5.95102795504778	6.32606086253836	6.46728400402053	6.30627402881459	0.191216397977102	0.537117492705481	0.854311531235259
Merged-chr16-33178587-4	chr16	33178084	33179084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6487.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	6.12146593784245	6.17942530179636	6.37915832968974	6.15509514228863	6.33222376424246	6.32697358721005	0.0857523017947798	0.761667653240463	0.941258867861232
Merged-chr1-172377227-4	chr1	172376711	172377711	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026234, exon 1 of 1)	exon (NM_026234, exon 1 of 1)	680.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	6.5181852680622	6.60192599425077	6.49730501492356	6.1452203398621	6.27998722039147	6.14275592905443	-0.566673866508674	0.036508775463958	0.235093004773412
Merged-chr2-76673852-4	chr2	76673330	76674330	+	757.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-732.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	4.75766720158253	5.03780776957745	5.03122035145768	4.7785700400986	4.71148385967846	5.39218290525052	0.0840892451454875	0.845909316217611	0.963945177091542
Merged-chr15-101155257-4	chr15	101154771	101155771	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18801.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	3.8846397085899	3.51056507085396	3.92617046834667	3.98261807244685	4.34517732595282	3.99616833587247	1.04431951377873	0.056660078092892	0.306868930068307
Merged-chr9-114723546-4	chr9	114723034	114724034	+	736.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146229, exon 13 of 13)	3' UTR (NM_146229, exon 13 of 13)	-7669.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	3.59684462674547	3.73978521193509	4.14997700577989	3.7523725716523	3.43605315156708	3.86343583248799	-0.49507947477552	0.401166816893861	0.777298074238646
Merged-chr17-88043024-3	chr17	88042522	88043522	+	920.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	21910.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	6.39803940068751	6.69003516256908	6.04335100065392	6.74680280289892	6.79437994974459	6.33385930026535	0.371322444165831	0.244247366959441	0.641499160694459
Merged-chr15-25893398-2	chr15	25892898	25893898	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	intron (NM_001034851, intron 2 of 8)	-40154.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	2.72361313511064	2.61403293924801	2.89336998789032	2.80491473193757	2.75085646929259	3.13340992128438	0.791406503638995	0.288427797257308	0.685876372615419
Merged-chr2-27351351-2	chr2	27350851	27351851	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER19B|LTR|ERVK	76257.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.78856327510376	5.7898129335449	5.92487246409745	5.5740196485207	5.41498660966683	5.5839468859382	-0.574969272966099	0.0683154594256795	0.341854945769246
Merged-chr14-51084013-4	chr14	51083528	51084528	+	942.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	7.26633699808798	7.63976430101718	6.81326603230442	6.26485098450023	6.26448431513638	5.86991769277943	-1.78105564749105	5.90323170639693e-08	4.46136334083448e-06
Merged-chr16-55686641-4	chr16	55686135	55687135	+	930.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135503.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.9494237136999	2.86979509200138	3.17679359927541	3.01153528471823	2.78671255283173	3.35286621527317	0.287867683646006	0.690945121566752	0.91808248978516
Merged-chr3-122251172-1	chr3	122250672	122251672	+	576.0	f0_balb.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	5615.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.74584162260557	3.51664698169843	4.30268271133583	3.47378760089103	3.24234826567567	3.62455465550994	-1.50089234560417	0.0192624574290656	0.15752241353884
Merged-chr4-54527863-3	chr4	54527348	54528348	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-420097.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	3.96905136698473	3.78563907603185	3.84800495566318	3.01396258793882	2.81514262199617	3.20792963905901	-4.62121040455921	1.18418864497484e-06	6.29610024096269e-05
Merged-chr9-120491679-4	chr9	120491190	120492190	+	872.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-916.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	3.02808170479869	3.06489409485119	3.268359125572	3.21557555664933	2.9771479790218	2.93127676111873	-0.318805663251228	0.638157128786204	0.897380718500389
Merged-chr7-16452824-4	chr7	16452348	16453348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026938)	promoter-TSS (NM_026938)	69.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	5.29993322256599	5.30236947573837	5.70762585292376	5.24560284699213	4.91771894738667	5.25150970665601	-0.605944209812569	0.107176968245642	0.436920345587349
Merged-chr8-83573252-4	chr8	83572714	83573714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134118, intron 5 of 12)	intron (NM_134118, intron 5 of 12)	6456.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	5.00496541184026	4.88590722530694	4.91492793216466	4.96057074008794	4.76078695570523	4.70833062622373	-0.268584131431365	0.489136120301365	0.829459847891797
Merged-chr13-69524304-1	chr13	69523804	69524804	+	970.0	f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	9560.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.30659517713974	3.40456201331844	3.52543609367093	3.15862123287587	3.0736907081633	3.54444160256834	-0.57823061841384	0.370769820827945	0.755041978743311
Merged-chr5-101952685-2	chr5	101952185	101953185	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 8 of 66)	intron (NM_172882, intron 8 of 66)	117236.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.76434616083306	4.193756867353	3.970641818515	4.14713779533262	4.05431775504844	3.88618543267828	0.132940283008084	0.798641929225672	0.952045635280249
Merged-chr4-46451962-4	chr4	46451449	46452449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	1023.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	7.27134008162185	6.9552772827774	7.31995378065572	7.54487743156116	6.78573204900821	6.98456912526038	-0.0600174238360063	0.844429119820007	0.96373428957366
Merged-chr11-75166975-2	chr11	75166476	75167476	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1176.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.69655956781444	2.55104405485459	2.71016747569599	3.13448295391454	2.86210402630359	3.0326634773037	1.90720599652378	0.0120536936385046	0.114624427459736
Merged-chr13-92354057-4	chr13	92353569	92354569	+	827.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	-714.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	4.94486268448707	5.20368484545522	5.1010203508905	5.2287067466134	5.41428772808648	4.90600108316196	0.260300269752934	0.499320088003123	0.834407103145886
Merged-chr9-38741588-4	chr9	38741094	38742094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 18 of 18)	intron (NM_001145957, intron 18 of 18)	-11202.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	4.37235911470144	4.22940334115425	3.65514168853676	4.0085579576198	3.80656250840285	4.10709757199084	-0.439617547477832	0.437006092815517	0.799753732839059
Merged-chr3-94613520-2	chr3	94613020	94614020	+	950.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011656, exon 13 of 13)	3' UTR (NM_011656, exon 13 of 13)	-30804.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	3.94541410217194	3.80239439138293	3.88655879705776	3.3713348082109	3.13615240177874	3.24242040900836	-2.4670748514099	9.9938909093064e-05	0.00283329361084009
Merged-chr6-142747395-4	chr6	142746897	142747897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9289.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	7.72154709475685	8.01327659936895	7.70206510976564	7.62155307902506	8.03340579867492	7.68563077585873	-0.034350944710502	0.890522991852383	0.974528422443459
Merged-chr5-108434428-4	chr5	108433865	108434865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007507)	promoter-TSS (NM_007507)	34.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	5.37663024838156	5.22487291255802	5.44328670903683	5.63376521063234	5.20707683994867	4.96483394896298	-0.0816072479455907	0.832007074326522	0.960550696133584
Merged-chr11-76494666-4	chr11	76494167	76495167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-172.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.51313759448503	7.57092514498903	7.42459411692437	7.29985559831955	7.29994006138607	7.22227491138776	-0.341246083908699	0.131081503381911	0.483837071958386
Merged-chr19-3934185-2	chr19	3933685	3934685	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1001.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	4.00573397281696	3.79899393935233	4.1696642498656	4.29039345646083	4.51941260043836	4.53390501754026	1.27980172327476	0.00805003165781533	0.0864416240004328
Merged-chr17-44351556-4	chr17	44351055	44352055	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162983.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.60983402260745	3.44668865751238	3.49391430696426	3.51804605408177	3.17419128641755	3.33937431754779	-0.651921611937605	0.285121341142501	0.682707750175219
Merged-chr13-40922510-4	chr13	40922009	40923009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	4875.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.57676950647024	4.98055947194365	4.72052320170741	4.71856156175381	4.37575699751082	4.30521104380686	-0.698480204486761	0.12042051799065	0.464017466660372
Merged-chr2-13556948-2	chr2	13556448	13557448	+	914.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12284.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	4.57069936052345	4.44189267538091	4.28659826751269	4.43948435291867	3.93670655913469	4.26235882160795	-0.579654433619467	0.232589245544568	0.628904752324193
Merged-chr4-144891423-4	chr4	144890922	144891922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1405.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	7.05625242881539	7.27733201460474	7.20963312238174	6.95552174104551	7.2966877386566	6.86655188857859	-0.179016680395075	0.495107652890963	0.832277774939923
Merged-chr16-97845765-3	chr16	97845272	97846272	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	5455.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	2.88356431422107	3.04347226819561	3.08302498186123	3.02054863538712	2.69772039547918	3.15475923533379	-0.177010028095918	0.806507026094864	0.954191062388418
Merged-chr16-45628640-4	chr16	45628149	45629149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 5 of 5)	MTE2a|LTR|ERVL-MaLR	18209.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	3.09864863210999	3.1759289897009	2.9964380033856	3.1480386896611	3.01202953801409	3.12958252569918	-0.00835101002670083	0.989841914674185	0.997611022725407
Merged-chr11-6297345-2	chr11	6296845	6297845	+	589.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	intron (NM_010956, intron 2 of 22)	4766.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	3.22108152085782	3.37184785450533	3.46872224583872	3.56738938158198	3.05238443464991	3.69113129993454	0.397622239489058	0.549231547352537	0.860243926439715
Merged-chr10-76344954-3	chr10	76344444	76345444	+	980.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081419, intron 1 of 37)	CpG	347.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	4.57351896895519	4.84295377398002	5.00139878260214	4.93785370171462	4.73166389579438	4.6572097594438	-0.0599951889272462	0.884973336756959	0.973538624783452
Merged-chr5-74253929-4	chr5	74253472	74254472	+	831.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	58646.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.76470577801843	3.82841027548538	3.98033626305626	3.6795159201507	3.5904948889384	3.70627635577799	-0.663656880635056	0.214685021050137	0.60785052509663
Merged-chr8-108595811-2	chr8	108595311	108596311	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11134.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.57024457135566	4.29520334118586	3.62322274958955	3.49394381060818	3.45968308787394	3.58295110063125	-1.244782275868	0.04457821832437	0.26612601451673
Merged-chr1-165616076-2	chr1	165615576	165616576	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	18465.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.66207512794593	6.82044595745696	6.84022710019113	6.57221331201818	6.67097723343354	6.78130668844067	-0.157324545488405	0.539363291508414	0.855855310267976
Merged-chr3-144207730-3	chr3	144207232	144208232	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2477.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.16602409808192	3.01953717083194	3.25847262649611	3.2854508176947	3.25639105348276	3.64029402670193	1.02084763609124	0.113818403555214	0.450659135047455
Merged-chr4-141162147-2	chr4	141161647	141162647	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	14225.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	5.50493902512438	5.74185026091414	5.93340175381441	5.81709376514493	5.93685359196943	6.08089097980243	0.386485641279986	0.227790499452851	0.622912839439754
Merged-chr8-82356621-2	chr8	82356135	82357135	+	701.125	f0_balb.idr|f1_balb.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	45951.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.38708583164973	4.22605695676558	4.04893175088591	3.74209045306955	3.35911908205259	3.70055858032635	-2.06034696912717	0.000300382345764924	0.00697772591468672
Merged-chr6-29276866-3	chr6	29276310	29277310	+	613.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4184.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	2.61339207612358	2.40210761968148	2.78247750732577	2.58495395364593	2.29737762823956	2.61489159875647	-0.586076551202549	0.484526797283884	1
Merged-chr2-150783014-3	chr2	150782508	150783508	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3788.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	6.2827537740515	6.06164157347919	6.21487310238547	6.09672226643159	6.38120924211488	6.01018160151664	-0.00455894692854392	0.98780160033759	0.997233411338816
Merged-chr7-19887338-2	chr7	19886838	19887838	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 1 of 6)	B1F|SINE|Alu	627.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	2.30654938188921	2.20162760237424	2.5088125815509	2.49333038967056	2.47976147761003	2.64416075686341	1.26797905744425	0.134493752810131	1
Merged-chr12-79615751-2	chr12	79615251	79616251	+	768.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	308982.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.39630203347226	4.38865360602682	4.66997401198927	4.50482987804541	4.26346761127771	4.62197116363965	-0.0528876662158735	0.906108313942171	0.978582776260923
Merged-chr1-45905314-1	chr1	45904814	45905814	+	795.0	f0_balb.idr	Intergenic	Intergenic	20280.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.18074443780674	5.16006845453524	5.72070352161049	5.25889292548398	5.23136610728023	5.33117693402234	-0.187027015608462	0.619458226808689	0.889785897704524
Merged-chr16-92703082-2	chr16	92702578	92703578	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-5749.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.23861413406639	4.13904332696208	4.61865744887482	4.36928364667652	4.18386888171508	4.81511100282299	0.353279637709344	0.482510278678477	0.825680519656117
Merged-chr10-14178936-1	chr10	14178436	14179436	+	910.0	f0_balb.idr	Intergenic	Intergenic	212557.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.63496788220925	3.84495635485262	3.67950549677988	3.40417079764446	3.31602676232078	3.74913243121873	-0.82429925113844	0.163328305691282	0.537136550627445
Merged-chr15-55557692-1	chr15	55557192	55558192	+	1000.0	f0_balb.idr	promoter-TSS (NM_026759)	promoter-TSS (NM_026759)	284.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	5.9349014193913	6.20986873511388	6.15573673195782	6.33171915665105	6.22374222012428	5.94071662739115	0.135251664656843	0.653544374057885	0.903427295126087
Merged-chr17-66514541-4	chr17	66514012	66515012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	5158.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	3.73989922915138	3.87446534384164	3.96366152654146	3.88369646286496	3.76229537335456	3.56104608750274	-0.356271243955329	0.511147337074931	0.841331921585713
Merged-chr4-109123353-4	chr4	109122848	109123848	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	RLTR19-int|LTR|ERVK	-5312.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.0247865794159	5.01125755431079	4.97046819428439	5.22572152845755	5.16790395682278	5.14092349685801	0.368393722765489	0.303885878084721	0.700321189846028
Merged-chr3-96905260-4	chr3	96904710	96905710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	88.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	5.39276586402673	5.48634922994757	5.09098943479758	5.63226477870572	5.39078756466079	5.22915207325099	0.169892383874362	0.640367274092813	0.898468596960034
Merged-chr8-72296753-2	chr8	72296243	72297243	+	902.5	f0_balb.idr|f1_balb.idr	Intergenic	PB1D9|SINE|Alu	-22319.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.49707063782499	7.47766067156295	7.48503951799328	7.07038570334016	7.56342822738413	7.59944119901907	-0.0779507474919429	0.761529822253296	0.941258867861232
Merged-chr13-41619715-3	chr13	41619209	41620209	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	13493.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.33928169794829	4.23435036802026	4.42337167723785	4.64659840119428	4.60645970921982	4.94077941496474	0.993830377820407	0.0223184701923649	0.173558436239841
Merged-chr8-128605791-4	chr8	128605217	128606217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-79937.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.30050006773772	5.23387874464045	5.15249205802407	4.9383179697027	4.77765223760413	4.89737332789835	-0.782472008600393	0.0334421402996511	0.223273177409402
Merged-chr2-102887659-4	chr2	102887164	102888164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14001.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.71825465955827	5.65459858810308	5.82207573460941	5.9873962897391	5.89973323047312	6.02328416077101	0.42706059867923	0.155156862462758	0.524671732128502
Merged-chr2-90486019-2	chr2	90485519	90486519	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-6845.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.24661675612154	5.26165388703931	5.30623337151865	5.55786973549746	5.48094024882894	5.46096368730428	0.455275443312542	0.170470474389012	0.547846214064376
Merged-chr2-174335877-4	chr2	174335388	174336388	+	845.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	5799.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	4.94863306044166	4.89256989600476	4.84562841575937	4.97582868379815	5.15445119298176	4.83361008638498	0.233328538933443	0.543031348314471	0.857468369859798
Merged-chr2-30214958-4	chr2	30214462	30215462	+	892.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9115.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	3.91249887465038	3.30958810058335	3.54815882530693	3.45534846644862	3.32272317704886	3.45297027390789	-0.75732594397059	0.225202730362685	0.620063864646258
Merged-chr3-153914060-2	chr3	153913560	153914560	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1094.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	3.54785251678472	3.60738942580395	3.45407661864858	3.6004414015692	3.71676450885556	3.63614580295472	0.394762134100283	0.479644941634055	0.824363039494411
Merged-chr18-20809841-4	chr18	20809327	20810327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-63423.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.97286130721686	6.88618504047726	6.96079582872514	6.88333066810732	6.75866512586277	6.50997675733177	-0.317399855227363	0.219941381102502	0.614288481430485
Merged-chr1-33814528-4	chr1	33814085	33815085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359275)	promoter-TSS (NM_001359275)	10.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	6.64957954443141	6.50475166384372	6.44363040432645	6.29499321123973	6.22333178334463	6.29165770550969	-0.444903545745844	0.0982123992432794	0.417772982783845
Merged-chr11-54626650-3	chr11	54626154	54627154	+	693.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175258, exon 11 of 28)	exon (NM_175258, exon 11 of 28)	30508.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	7.10880084987413	7.22454796730528	7.09358684996985	7.09194331975251	7.51367795809405	7.11250232389468	0.178340934140552	0.489856435311475	0.829956104933665
Merged-chr5-105595725-4	chr5	105595230	105596230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	76259.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.87881157762797	6.81747227070486	6.56618301888063	6.6233033802486	6.89467526653801	6.69380775195789	-0.0320364716073023	0.904502699612628	0.978131323042371
Merged-chr12-40626694-4	chr12	40626191	40627191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 4 of 52)	intron (NM_172803, intron 4 of 52)	180638.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.22756528236398	4.94438193531756	4.73426356486149	4.78414597246236	5.02679132421458	5.03008875883059	-0.0923889895787816	0.818583885873179	0.957000374759562
Merged-chr17-45561661-2	chr17	45561037	45562037	+	655.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304956, intron 5 of 5)	B1_Mus1|SINE|Alu	-2399.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	2.53531194619208	2.52968960113791	2.695074255959	2.40695252701507	2.38628206655393	2.93913128930857	0.0700930933677043	0.933422669295235	0.985462398390107
Merged-chr12-17000120-4	chr12	16999606	17000606	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	12.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	3.33015523348944	3.23938845296495	3.58950473167084	3.08130965439569	2.80060890129957	3.00146812016553	-1.9436879849108	0.00617678683579363	0.0712480490962076
Merged-chr6-84661261-1	chr6	84660761	84661761	+	842.0	f0_balb.idr	intron (NM_177077, intron 20 of 21)	L1MD3|LINE|L1	-67353.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.26255093028731	4.08387265637589	3.96230231089255	3.85123409807774	4.12256031142393	4.08079711052778	-0.259766655484229	0.604877884582499	0.883259091356564
Merged-chr18-70531031-4	chr18	70530546	70531546	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	-725.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	7.58483535480553	8.22631381349453	7.5265215997093	8.42723385286436	8.86502909007354	8.00462672514226	0.923945306184562	0.00378967680440119	0.0499574504975625
Merged-chr11-107470285-2	chr11	107469785	107470785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153311, exon 1 of 10)	non-coding (NR_153311, exon 1 of 10)	435.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	8.55267545220957	8.78432201896609	8.61494289314166	8.5087847007965	8.72308320587626	8.58435382677518	-0.0624052583641042	0.765275063859994	0.942137701159565
Merged-chr17-35208426-4	chr17	35207918	35208918	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3067.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	4.77070651958674	4.75931248296574	4.83739130433592	4.73227421375572	5.26303233698719	4.8266497238865	0.420472724510577	0.30923863476938	0.704827247429003
Merged-chr2-30084320-4	chr2	30083814	30084814	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153805, intron 9 of 21)	MTD|LTR|ERVL-MaLR	5616.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	3.82807373461683	3.43066546370782	3.95355316878981	3.90579509317693	3.52697088224827	4.02161174842006	0.248094650040327	0.676117280555751	0.912421384593547
Merged-chr2-166980335-4	chr2	166979862	166980862	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	URR1B|DNA|hAT-Charlie	-15645.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	6.42851492978525	6.25828819021734	5.89910877654609	6.30816847558076	6.71380275679329	6.05865265974691	0.302603938226404	0.369771694547979	0.754342005045842
Merged-chr5-122645427-2	chr5	122644927	122645927	+	876.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	L1MB8|LINE|L1	1516.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	5.00118553203999	4.77480399176244	4.35127537367349	4.61175345214899	4.41578231951672	4.21859083372367	-0.761482653490332	0.108587287816193	0.440273571814211
Merged-chr6-29929771-3	chr6	29929232	29930232	+	766.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037740, intron 8 of 20)	intron (NM_001037740, intron 8 of 20)	12719.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	2.1501301453038	2.19379490840778	2.06304901889205	2.3313924481949	2.21468374357441	2.53461426159912	1.5521473446381	0.0910677663834902	1
Merged-chr17-81708701-2	chr17	81708201	81709201	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	29686.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.38607941218023	3.29935897022188	3.43755456820627	3.1768996754647	3.2281239507218	3.2312997603413	-0.655629423098703	0.285672581205078	0.683152802436807
Merged-chr13-23732516-3	chr13	23731993	23732993	+	787.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6314.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	3.76192756513345	3.41971964249616	3.73896979442844	3.88795847968476	3.71351034213699	4.0020106876766	0.724263868860984	0.195420819754215	0.583096846154808
Merged-chr2-122409166-4	chr2	122408664	122409664	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31656.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	6.45416707375822	6.96706501284003	6.47440673374577	6.79122620729178	6.91097189457075	6.87860257153005	0.306814728109966	0.284306130608018	0.682056145293253
Merged-chr3-51185624-4	chr3	51185133	51186133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38814.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	7.19421560069393	7.51785234361797	7.15719296656327	7.73850659494124	8.23788909459391	7.71058522920118	0.900507523361818	0.000919110689898696	0.0168749696127738
Merged-chr14-48457444-4	chr14	48456945	48457945	+	876.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	11093.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	5.91762040778281	6.23575549111422	6.20127484125163	6.24171862564809	6.04451979870599	6.22080498006666	0.0732508533117201	0.804421587667847	0.953645244705356
Merged-chr1-105093989-2	chr1	105093489	105094489	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-262018.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	3.43773379894251	3.62642146347604	3.8325540984086	3.8952937815249	3.90065121710652	4.17378634757911	1.15178142702726	0.0369826188541828	0.237112786994825
Merged-chr19-7268919-4	chr19	7268428	7269428	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_054048, exon 2 of 13)	5' UTR (NM_054048, exon 2 of 13)	649.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	2.33938424761272	2.2701722289202	2.69573386963272	2.40017141645435	2.26522698565925	2.33639772836057	-0.688015913883026	0.423939720265854	1
Merged-chr13-113615159-4	chr13	113614635	113615635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3429.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.30255434884219	8.49563217313959	7.94339368297875	8.04183863110529	8.49024877687607	8.15544664359941	-0.0350954199846751	0.892089946628947	0.974942585822634
Merged-chr13-99187073-4	chr13	99186606	99187606	+	912.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2283.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.82383721245891	6.94024270528041	6.63223524497251	7.16545425575241	7.46652291124613	7.00431249113838	0.643814351017145	0.016842429529224	0.144016532346898
Merged-chr15-64060555-5	chr15	64060087	64061087	+	986.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-139.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.93400528892328	7.73473445740637	7.87445513822443	7.94892554300508	7.60521182552195	7.81786821959896	-0.0776909535088279	0.73667041800151	0.933222784298367
Merged-chr17-73940093-2	chr17	73939593	73940593	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 3 of 35)	intron (NM_011723, intron 3 of 35)	10103.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.65047901998704	4.17253067937561	4.28247848649198	4.54945112809006	4.40543950843529	4.68739380663637	0.387788737705951	0.405277540244617	0.780049815379569
Merged-chr11-40135215-3	chr11	40134706	40135706	+	972.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	557476.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	2.88721499748508	2.71910168767825	2.9159166614607	2.85988401725989	2.55032617624307	2.74496083865219	-0.625419574902055	0.406009178066568	0.78051705678514
Merged-chr2-68437245-2	chr2	68436745	68437745	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	34736.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	3.5888144139796	3.36683320642575	3.34929141758014	3.70101577544114	3.5297665980675	3.69796829216996	0.708849363220918	0.224047546412589	0.618860318745809
Merged-chr15-57925168-2	chr15	57924668	57925668	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	12969.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.75307416104844	6.52925929053925	6.48289760130235	7.11512234434813	7.31303786576616	6.70452412206105	0.745028651318129	0.00939277817313019	0.0963217015318975
Merged-chr1-171221533-1	chr1	171221033	171222033	+	644.0	f1_balb.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-31.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	3.56297341041035	3.28728138845791	3.6449884662034	3.48082778474664	3.13994972158407	3.45499080682498	-0.532090578608705	0.396430481358941	0.773652887901204
Merged-chr8-126566160-4	chr8	126565666	126566666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27270.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.11067469479872	7.08901902074554	6.53680683512112	6.59079263450044	6.42268559121731	6.02943353352228	-0.897211159931283	0.00462211123042587	0.0579910481395168
Merged-chr13-23759377-2	chr13	23758877	23759877	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1872.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	3.51115932403873	3.32433809882757	3.27358316696122	3.31412527517749	3.40632012909206	3.34589584421672	-0.0771876214279727	0.898590868920028	0.976398924551551
Merged-chr6-84017610-4	chr6	84017140	84018140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-1746.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.31078022597751	4.2264762279501	4.22089241834662	4.39245974065126	4.23083753543413	4.37837831558405	0.203624114140747	0.651792175343318	0.902896807825606
Merged-chr11-70958210-1	chr11	70957710	70958710	+	806.0	f0_balb.idr	intron (NM_001083331, intron 5 of 16)	intron (NM_001083331, intron 5 of 16)	11763.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	2.93251125830063	2.92041492773009	3.01559038426667	3.18810811913806	2.99709827697079	3.20366753683945	0.79665960341945	0.232299475600784	0.628651894354467
Merged-chr10-19522378-3	chr10	19521877	19522877	+	964.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27734.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	5.57491533145345	5.70761527966169	5.95137497766643	5.80768863087742	5.45513317169165	6.17503951511129	0.155685910523668	0.666174547730628	0.908049448139768
Merged-chr1-44162597-3	chr1	44162099	44163099	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011729, intron 6 of 14)	intron (NM_011729, intron 6 of 14)	14855.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	4.01699184774911	3.58578468277031	4.03117047654539	3.76447951300569	3.69909514879884	3.86322836009523	-0.370667285659636	0.500706559906157	0.83521022064975
Merged-chr4-101182802-4	chr4	101182285	101183285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 5 of 24)	(A)n|Simple_repeat|Simple_repeat	82497.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	6.12435471341366	6.01195539615272	5.71999142795453	5.85157493294457	6.41655689568736	6.0376823169861	0.27920702752723	0.402841899333471	0.778361555465358
Merged-chr4-56055275-4	chr4	56054775	56055775	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-522800.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.83392814556566	3.86057187371276	3.65276362048437	4.24391860789261	4.21100836316383	3.84086197798648	0.984588932113775	0.0637445517224222	0.328994954702847
Merged-chr12-69372025-4	chr12	69371496	69372496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-154.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	8.90775904789712	9.0298637160279	8.69375717803765	8.82575029081537	8.82884105189073	8.53173530943638	-0.203301937358598	0.356225462562814	0.743119519866789
Merged-chr11-94212133-3	chr11	94211597	94212597	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009427, intron 1 of 1)	intron (NM_009427, intron 1 of 1)	643.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	6.50622264218001	6.03628551278421	6.05001495598053	6.08889924167222	5.73979699311323	6.11096364097269	-0.411031024527233	0.207843034507624	0.59868364609575
Merged-chr6-72957927-1	chr6	72957427	72958427	+	753.0	f1_balb.idr	exon (NM_001039392, exon 1 of 2)	exon (NM_001039392, exon 1 of 2)	305.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	4.16729285139876	3.74176781640937	3.86886282141205	3.84842806098552	3.51852133925613	3.61732915514534	-0.886228541741692	0.116703339834807	0.456175631276233
Merged-chr1-74371050-2	chr1	74370550	74371550	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4153.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	3.46224305609155	3.37506617325705	3.47994231514148	3.87212974718579	3.38337568816046	3.762338654867	0.87396158646657	0.143140877370811	0.50502227934974
Merged-chr5-35727675-3	chr5	35727173	35728173	+	810.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1603.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	6.59835218232229	6.94900198999858	6.54533163825624	6.6183015899092	6.67268521134298	6.00212629094085	-0.376168148061861	0.242387646526549	0.639506411823239
Merged-chr13-112665947-2	chr13	112665447	112666447	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	URR1A|DNA|hAT-Charlie	5181.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	4.65800357190107	4.83134176061907	4.73297126684807	5.68916940138698	5.75202128135394	5.5038170250374	1.87258325038011	2.74946960702235e-07	1.73316565955391e-05
Merged-chr5-146676036-2	chr5	146675536	146676536	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-90797.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	3.27920662594243	3.07143972549692	3.05658713819884	3.80017731381407	2.95360128244035	3.37803197759143	1.10946932241608	0.126962960557015	0.476235586801971
Merged-chr3-129878571-4	chr3	129878059	129879059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-47.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	5.82498802421176	5.70691559387367	5.12573899111679	5.56931161280002	5.2232967623381	4.77106915730646	-0.688589364292725	0.115403682833216	0.453631539581451
Merged-chr2-80617165-4	chr2	80616635	80617635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024438)	promoter-TSS (NM_024438)	-79.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	3.88216625844067	3.96899291313726	3.90020551905845	4.15706069177038	3.96808238425454	3.97020308123573	0.347826331904444	0.48408951581742	0.82665199605554
Merged-chr8-84738444-3	chr8	84738058	84739058	+	803.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	35811.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.82180731685536	3.99614873210984	4.00859634532864	4.06373274114012	3.76139787472764	3.88088148156313	-0.115129925916373	0.823435819887399	0.958366850481353
Merged-chr15-67116871-4	chr15	67116339	67117339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	60043.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	5.69102353947413	5.44621679369648	5.53497590308276	5.15474432947069	5.04725426203489	5.09539774620197	-0.925007664549957	0.0076098475395827	0.0829991078874816
Merged-chr9-35115980-3	chr9	35115491	35116491	+	865.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029475)	promoter-TSS (NR_029475)	-737.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.78060524393046	6.65470356592058	7.09263575278511	7.11260804953553	6.90629325121406	6.94265389541906	0.222066930740214	0.403598419614394	0.778907974006136
Merged-chr12-8522946-5	chr12	8522471	8523471	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	16595.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	4.94769489162034	4.67817183253447	4.86323200901573	4.88620809029084	4.76369885141512	5.31266550536656	0.357623129926037	0.389018641030036	0.768867573000832
Merged-chr19-15984989-4	chr19	15984475	15985475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045355)	promoter-TSS (NR_045355)	14.0	NM_198019	208518.0	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	5.02248827355351	5.11660190760766	5.30938316923543	5.5104667230622	5.22054309169861	5.14604004961747	0.321696058974335	0.379830384900886	0.762097533655971
Merged-chr9-78521099-4	chr9	78520640	78521640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39416.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.40465819015695	5.56993521379863	4.94101749736704	5.5064629826432	5.12878644601429	5.33102196104254	-0.034390304850222	0.929794164056821	0.984254144863365
Merged-chr8-81016212-1	chr8	81015712	81016712	+	1000.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-1306.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.22972040312734	4.12747437402691	4.10404405877245	4.40253297659482	4.32473389000476	4.4020919607049	0.584951396197765	0.19793720819845	0.586043439320662
Merged-chr1-156860509-3	chr1	156859937	156860937	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028333, exon 5 of 5)	exon (NM_028333, exon 5 of 5)	21414.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	5.36098505190007	5.39939900690418	5.1813971063384	5.19746813951404	5.30818410545015	5.21214497517524	-0.161732358035608	0.641738476178399	0.899171520014446
Merged-chr12-98317607-1	chr12	98317107	98318107	+	691.0	f0_balb.idr	Intergenic	Intergenic	48972.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.09109825907428	2.90276333894537	3.12306420771886	2.78056106242598	2.73871532788601	2.78370153154225	-1.412286542147	0.0507485148254794	0.286946140373269
Merged-chr7-99085293-2	chr7	99084793	99085793	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 5 of 14)	intron (NM_178635, intron 5 of 14)	55851.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.37509820169391	2.30758964556594	2.47395335875769	2.47505209100999	2.48121532434371	2.73119747302914	1.10404204209358	0.175677316186754	1
Merged-chr18-35745930-4	chr18	35745453	35746453	+	847.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.65530666989733	5.60686011460631	5.92384760864578	5.85530629042647	5.96319552793714	5.89137142302982	0.326912633048979	0.292045906606747	0.689299251061842
Merged-chr9-118856832-4	chr9	118856336	118857336	+	904.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-69700.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.36035142678609	5.04150226586251	4.55520727799232	4.96283311876337	4.95882350161585	4.88402691474098	-0.220865636167649	0.609887978115908	0.885331420927875
Merged-chr5-64885233-4	chr5	64884749	64885749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47450.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	6.67693779485834	6.47240237403193	6.47096162413554	6.84275111172942	7.07857186224239	6.60348645972676	0.504037522369684	0.0694032316601703	0.344790978564657
Merged-chr8-125528129-4	chr8	125527623	125528623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-35290.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.59320336265127	5.75135921724911	5.49328516903085	5.22311191565005	5.51052733790077	5.4978520102012	-0.389352078295323	0.250123658601554	0.647307401971844
Merged-chr14-15066563-4	chr14	15066091	15067091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245776.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.71244311882617	5.7295524366994	5.47991375589393	6.07624156943449	6.09038438690334	5.60596856063658	0.539000765528856	0.105570903378465	0.433670708658438
Merged-chr19-8712130-4	chr19	8711625	8712625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 3 of 9)	intron (NM_001161413, intron 3 of 9)	1772.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	6.98270269756049	7.12203653096423	6.51223699609002	6.90402014971754	7.36591453717157	6.73468526549406	0.203693750804435	0.516823883295261	0.844319382666494
Merged-chr12-101082034-1	chr12	101081534	101082534	+	545.0	f1_balb.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	-417.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	4.42847253025399	4.59257712064122	4.84849966744848	4.96329698641549	4.72132626798029	4.32707039778655	0.180680600643337	0.694271155723388	0.919210273513843
Merged-chr11-114910524-2	chr11	114910024	114911024	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	20483.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.30862449133593	3.25096939368262	3.39068660710955	3.22259605116004	3.207075223605	3.40735244321188	-0.155044478761238	0.800148049471032	0.952408432552781
Merged-chr4-139602392-2	chr4	139601892	139602892	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20502.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.45370135332934	3.3390627123298	3.18813147442281	3.67438893759009	3.58286266429524	3.76613755576266	1.22760532957871	0.0421136911017637	0.256960619035029
Merged-chr12-99608918-2	chr12	99608418	99609418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19056.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.22182214782177	5.25434066051738	5.37552818594879	5.47806788597319	5.46047033572988	5.6072664510263	0.453135538311818	0.175521084957215	0.555463669244799
Merged-chr19-46479761-2	chr19	46479261	46480261	+	952.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-21887.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.64278050099964	5.01419603684639	4.90484194623485	4.44919662894923	4.45161273019599	4.31527737638356	-1.08259033075218	0.0121970401619791	0.115525477267838
Merged-chr7-82688789-3	chr7	82688242	82689242	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175317, intron 12 of 19)	RMER17C|LTR|ERVK	40128.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	2.81769053842369	2.90160370514927	2.93102293526056	2.94542687629315	2.8156152540502	3.22853780998326	0.555830218687004	0.431517765317512	0.796911573849146
Merged-chr10-115250564-4	chr10	115250061	115251061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	932.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	7.66453721184133	7.74440501747681	7.03610247521355	7.20960794665321	7.26925898496549	6.81824303948935	-0.600361877711719	0.0441819297565561	0.264538390385229
Merged-chr9-85325678-4	chr9	85325192	85326192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160379, intron 2 of 2)	intron (NM_001160379, intron 2 of 2)	1432.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.66103362644916	6.83994945516222	6.23568562547016	6.94251309672086	7.21854899992472	6.78781640580256	0.59932010785413	0.0458127945744448	0.270414713002574
Merged-chr13-20157778-4	chr13	20157264	20158264	+	870.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	67257.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.11459143784458	4.69645549535072	4.72333828994319	5.00328428666151	4.7037282132571	4.97776300395685	0.064095100174855	0.877529221118841	0.971635702815161
Merged-chr19-29486033-1	chr19	29485533	29486533	+	558.0	f1_balb.idr	Intergenic	Intergenic	35954.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	8.05605436600249	8.28248861548174	7.91781330548143	8.20522224542055	8.43500112864887	7.8917304457073	0.148507258371031	0.554031473694068	0.862575362378324
Merged-chr7-126676398-3	chr7	126675896	126676896	+	707.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133670)	promoter-TSS (NM_133670)	22.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	5.23562323682365	5.37675664595221	5.46180260423938	5.38189079792272	5.29103326428625	5.63173821283789	0.147383998280374	0.671086825442863	0.910289924720412
Merged-chr8-84742949-2	chr8	84742449	84743449	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31420.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	2.73873634770028	2.80395863397754	3.04113194267877	2.89345981935491	3.04992197515669	3.05574596775903	0.678126513345227	0.335568333428943	0.725705115162445
Merged-chr10-81431916-4	chr10	81431418	81432418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4745.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	6.40324551717551	5.94105407296133	6.03641088520019	6.30516000674196	6.41072713784458	6.16543629110647	0.260257679508498	0.394718237306287	0.772514857254462
Merged-chr11-20251420-4	chr11	20250940	20251940	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2016.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	3.70629643212754	3.61344626219998	3.40013436667836	3.60675018970767	3.59336551185602	3.69492060863456	0.14863991720788	0.79365967172601	0.950531747588938
Merged-chr11-120349626-3	chr11	120349115	120350115	+	852.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038126, intron 1 of 1)	CpG	937.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	8.54375204011363	8.80459334781786	8.50541384837764	8.6504584441762	9.00164285989915	8.6544046984385	0.21531496880756	0.345833267444833	0.734290015947412
Merged-chr16-32115371-4	chr16	32114856	32115856	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15554.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	5.270537772694	5.48432076434763	5.2181915900587	5.48617622844909	5.28845429544268	5.31548117623509	0.0563334164929321	0.871453619696238	0.970222087171093
Merged-chr4-97839681-4	chr4	97839231	97840231	+	996.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	62105.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.86702936467582	3.94773370543723	4.06814639198701	3.67769203046991	3.51266075318243	4.17817407962333	-0.465171026873509	0.416561328069603	0.787467859490367
Merged-chr1-120074841-7	chr1	120074405	120075405	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	8.09710367136985	8.46244345581178	8.29709778959512	8.62754750430922	8.9188279201891	8.3274235024834	0.504331890853495	0.0451381089060567	0.268090005933621
Merged-chr6-30402614-2	chr6	30402114	30403114	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311087, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	759.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	6.00484990763983	5.96080040810508	5.929729510138	6.09045319194162	6.18878218213099	5.99113083910172	0.228313579501403	0.42979413714886	0.795863007201232
Merged-chr10-82797048-3	chr10	82796605	82797605	+	872.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15018.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	2.79711881313342	3.02680346855124	2.98543291928331	2.7490731527327	2.81414674116854	2.81731434131201	-0.728111510777473	0.30813489493177	0.704143917870008
Merged-chr16-76372429-6	chr16	76371925	76372925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	CpG	624.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	8.09140268207361	7.55816964115155	7.85809656266515	8.25261828635011	7.70068899058389	7.73610305981946	0.0987749025620876	0.722886535976027	0.928972897683858
Merged-chr1-165651374-4	chr1	165650873	165651873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16832.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.53578416571095	4.48624649032415	4.96986276298694	4.65644947426023	4.70226152683961	4.75493611651529	0.083576996042176	0.845175433263116	0.963760118842549
Merged-chr9-86451806-4	chr9	86451324	86452324	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027394, exon 2 of 10)	exon (NM_027394, exon 2 of 10)	13092.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	2.30568390571479	2.33873529605502	2.48975906639488	2.36614015014994	2.06124349239696	2.50193281114337	-0.370613146444879	0.683689888652493	1
Merged-chr10-10412392-2	chr10	10411892	10412892	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 11 of 36)	intron (NM_001127353, intron 11 of 36)	59922.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.54414950140353	3.42530851625545	3.63994674081143	3.93280136563801	3.89189403166178	4.18527737230524	1.56258372257237	0.00456188907219109	0.0573912406892767
Merged-chr11-118233695-2	chr11	118233195	118234195	+	821.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14897.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.03858141097799	6.81333442814653	6.73051343707013	6.77278617628258	7.02864594579904	6.5662981605046	-0.0877027682007	0.751510137611722	0.937886504040509
Merged-chr3-116437119-4	chr3	116436621	116437621	+	771.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER72|LTR|ERV1	-13089.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	5.0383315888015	5.5099532135737	5.45803267026045	5.32300269239387	5.57721236717982	5.75582600292138	0.401991712047959	0.27629591272896	0.673680780236515
Merged-chr19-56744387-4	chr19	56743898	56744898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22026.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	8.04624755458142	8.37990585900471	7.74205764911682	7.93686406095284	8.42013921639724	7.99919910928122	0.0750690389252605	0.784794181275716	0.947770123968912
Merged-chr19-11497433-4	chr19	11496936	11497936	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	5398.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	4.11776111885905	4.15914703183161	4.10133084359739	3.99968073745667	4.2656202820473	4.07356852910147	-0.00532144578361972	0.991175452888092	0.99819885759976
Merged-chr12-33310091-2	chr12	33309591	33310591	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	L1MB3|LINE|L1	7576.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	2.35574513676881	2.46128074360086	2.35507678181521	2.66549434268899	2.49673462663294	2.62698672229871	1.2343450588469	0.12956166597987	1
Merged-chr4-32351394-3	chr4	32350835	32351835	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66100.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.00803531909265	3.93932750998256	3.59841716454869	3.38258755800394	3.33808787250859	3.55819619589554	-1.59255829409708	0.00695618557528374	0.0777657247545626
Merged-chr9-32695975-4	chr9	32695456	32696456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-86.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	7.35521447236729	7.61825737735197	7.13847107005595	7.14926066316609	7.25033262925395	6.54686676701305	-0.538351106080018	0.0753741350240758	0.36159125428477
Merged-chr19-34511280-4	chr19	34510801	34511801	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	16173.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.401382877208	6.44211031160818	6.3574112216051	6.05340599535149	6.11825682555596	6.32188157180707	-0.401488392704374	0.148177069598393	0.513680704882835
Merged-chr18-5345019-6	chr18	5344499	5345499	+	999.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10192.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	5.64505573306912	5.95346152981889	6.13438575508355	5.90309341224827	5.82753959876829	5.46624674395529	-0.290968861113498	0.393668630851843	0.771846165930398
Merged-chr18-61092625-3	chr18	61092112	61093112	+	772.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-12960.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	4.35266772818575	4.78175470690585	4.79669960493707	4.75575462673624	4.83492277317645	4.54168636470911	0.159986582818187	0.714175486236423	0.925756575982089
Merged-chr5-122646752-2	chr5	122646252	122647252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	L2|LINE|L2	2841.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.64053016421644	4.78858059323438	4.48704007544361	4.63748248983043	4.13492471022466	4.67753002789003	-0.373912674651042	0.421165941184248	0.790157011473931
Merged-chr6-29524306-4	chr6	29523808	29524808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2317.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	8.57466580040985	8.41833060896177	8.23900790060355	8.25669456050054	8.61397625446618	8.23568958245919	-0.0484703760177533	0.836469227225903	0.962001762335242
Merged-chr2-76070549-4	chr2	76070038	76071038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-88571.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	4.73206727692813	4.8366129986504	4.90965359671874	5.08510997554901	4.60689616618003	5.00925333527945	0.187149904828484	0.648908392180084	0.901995781836595
Merged-chr1-127979122-3	chr1	127978664	127979664	+	642.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	(TG)n|Simple_repeat|Simple_repeat	110391.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	3.41663598726639	3.19951138034193	3.28193516653224	3.4197563729436	3.18637934442228	3.29625881298889	-0.00637000093735051	0.991818374271389	0.998351393644539
Merged-chr7-96951526-4	chr7	96951042	96952042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153591)	promoter-TSS (NM_153591)	15.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	8.37408580351267	8.66918368597461	7.97136835987684	8.08553264044415	8.18846195147446	7.78123517845744	-0.479481998224474	0.0747301608174371	0.359846482713965
Merged-chr19-5930388-4	chr19	5929891	5930891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5575.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	8.4055785727229	8.29647627710565	7.90617519806506	8.09715409063563	8.40609247428683	7.76125574803073	-0.142781315869798	0.599500613853929	0.88105150498118
Merged-chr13-75797961-4	chr13	75797463	75798463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41922.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.3222618619485	6.15117801291735	5.61230964146657	6.29055814578066	6.26479155730578	6.05518222798051	0.226412198985126	0.497052872448176	0.833442633454308
Merged-chr19-43667795-2	chr19	43667343	43668343	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	B3A|SINE|B2	7038.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	3.91386356587765	3.93306944630312	4.09797775651597	3.90936943197908	4.02622580055893	4.02683307908173	0.0329317151676237	0.946945732037313	0.988007649185823
Merged-chr15-50779842-4	chr15	50779335	50780335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109214.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.87115467159035	4.86846131381243	4.58237470277968	4.72390166950637	4.74171615576107	4.47031933774759	-0.300284097093866	0.472861979281424	0.820550293768681
Merged-chr7-99149250-4	chr7	99148732	99149732	+	957.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8088.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.22499240672313	3.83313449947666	4.26315046118401	4.32003864501461	4.31459862214603	4.37372195174645	0.602017959124589	0.215194639376736	0.608548056852407
Merged-chr9-100505527-2	chr9	100505027	100506027	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	1329.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	7.25256378420689	7.70144688303984	7.32225909910074	7.49213578783453	7.80879883089786	7.41315869137771	0.209751525494587	0.429675349936025	0.795845510948914
Merged-chr1-80676439-4	chr1	80675949	80676949	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-11097.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.73439685008358	4.7577180619681	4.88976757596817	4.76695282346891	4.91573416449728	4.91866730899683	0.179689659000452	0.643452978610017	0.899809005481871
Merged-chr11-89094014-2	chr11	89093514	89094514	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033266)	TTS (NM_001033266)	20173.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	5.99917410140283	6.10207684636832	6.28056437649027	6.50695487297645	6.65095286562578	6.41728484712406	0.679701688598496	0.0150306017908255	0.132922341780317
Merged-chr7-19697594-2	chr7	19697074	19698074	+	639.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 3 of 4)	exon (NM_009696, exon 3 of 4)	824.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	5.1998531403525	5.06245111297894	5.48504562565444	5.60958839876701	5.4457533997956	5.51959030447482	0.543525174230086	0.121241358297993	0.465650022624116
Merged-chr17-50466261-2	chr17	50465761	50466761	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-43286.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	3.31125542914957	3.19892821658627	3.22396952511101	3.55904952656876	3.16076093993557	3.35493549588431	0.475743707982513	0.451209301589708	0.808957790071745
Merged-chr5-102055174-4	chr5	102054653	102055653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	MLTR11B|LTR|ERVK	14768.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.4146481549053	7.33067910402156	7.3992400332877	7.64540923875111	7.89854271040623	7.48813849232942	0.461535317351815	0.0533298855815113	0.296028893893688
Merged-chr7-100534393-4	chr7	100533907	100534907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2693.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	6.13124082117085	6.07328365779334	6.19729692805074	6.10403020788847	6.46324048374895	6.3932147657505	0.336457499011946	0.243573756781482	0.640776628186919
Merged-chr11-97362266-4	chr11	97361788	97362788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138657)	promoter-TSS (NM_138657)	-263.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	8.00830948794522	7.6675508996929	7.43767643347654	7.96345520218994	7.56596853969097	7.59827316118639	-0.0142892430357733	0.95761987511719	0.98996830630481
Merged-chr6-83102182-5	chr6	83101749	83102749	+	915.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081266, exon 1 of 9)	exon (NM_001081266, exon 1 of 9)	733.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	5.95089531592414	6.26227738357999	6.31910865482887	6.14733169899739	5.92611714186363	5.80284811398145	-0.362462739340853	0.242404963812434	0.639506411823239
Merged-chr7-66434897-2	chr7	66434397	66435397	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7420.0	NM_053080	56847.0	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	2.3351475698371	2.26601862610859	2.51947937519426	2.18474415846258	2.37795743327494	2.59256249667707	0.111636214128994	0.897532389388419	1
Merged-chr3-103790966-3	chr3	103790434	103791434	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	CpG	341.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	7.55977526961153	7.40346163837046	7.18241755905424	7.57324850472685	7.28462538531568	7.42464939652877	0.0477289510765758	0.84722289605525	0.964186748670995
Merged-chr11-102424911-4	chr11	102424404	102425404	+	983.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5418.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	8.60028846861463	8.52136670945612	8.25680421955734	8.40897187749623	8.75370866339587	8.02678032136573	-0.0433180482346811	0.870337179145149	0.970065609722504
Merged-chr8-85510946-4	chr8	85510432	85511432	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 5 of 11)	intron (NM_173866, intron 5 of 11)	18315.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.74272666501436	5.33888188448078	5.31694774994292	5.78488027502083	5.7853832677816	5.2062828828775	0.267717752798958	0.47992434881794	0.824391932626821
Merged-chr4-56946822-4	chr4	56946317	56947317	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175518, intron 1 of 17)	CpG	612.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	5.86932302938735	6.24512386939644	6.25919267136198	6.05360476269127	5.51247239631466	5.89076721986583	-0.525840266147516	0.119174040851773	0.461563656264862
Merged-chr1-149961071-6	chr1	149960573	149961573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	217.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.73706634843426	7.9095366468122	7.69379443442539	7.60514349124194	7.9041998381085	7.6104245263234	-0.0942684084630056	0.687293811062429	0.917053020812408
Merged-chr1-191122954-4	chr1	191122509	191123509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24595.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.97964917588619	6.26560745848543	6.64401284421149	6.45177418432825	6.25404799939887	6.55402561907601	-0.393749218353941	0.212085781877266	0.604440119826125
Merged-chr2-6165988-4	chr2	6165508	6166508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27243.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	3.51363897260982	3.34302666144612	3.57616285505683	3.43163340084179	3.2485979984871	3.69538763292792	-0.0571589110312907	0.925226647767542	0.983166193538686
Merged-chr5-111329989-2	chr5	111329489	111330489	+	735.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-708.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	5.10384261210598	5.21684583832106	4.78602298825729	4.87462381542973	4.47901005814404	4.59965307595133	-0.893130893003211	0.0331981952649129	0.22225047240079
Merged-chr11-69920925-2	chr11	69920425	69921425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166594)	promoter-TSS (NM_001166594)	22.0	NM_001166594	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	8.9970850730191	8.64935382192628	8.87835078248525	8.71786774269121	8.8048984042746	8.88814942044842	-0.061893819908969	0.77055548346509	0.943392092118189
Merged-chr13-81072468-4	chr13	81071975	81072975	+	947.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	ERVB5_1-I_MM-int|LTR|ERVK	108401.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.92709042166809	3.70524189707625	3.89460658969314	3.96675886950006	4.20122796065601	4.10883750944922	0.771574214579744	0.127949871493267	0.478368729180139
Merged-chr11-99177254-3	chr11	99176724	99177724	+	871.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22147.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	3.5427933797013	3.21855528260879	3.27713396154733	3.64136746759853	3.18277549543952	3.3506020587065	0.183918886625823	0.775497676611915	0.944682505926692
Merged-chr10-89703235-4	chr10	89702744	89703744	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16881.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	3.67776866576219	3.55660433541597	3.6876192092369	3.97815271422949	3.76471759696212	4.34771667858258	1.27255805302222	0.0225590187263977	0.174870048959828
Merged-chr4-144930494-3	chr4	144929979	144930979	+	860.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37342.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.41714818064864	3.59306930398281	3.54348630836014	3.12692125635929	2.85544352394039	3.23040064390692	-1.95975560082102	0.00441418044651573	0.0560764199786026
Merged-chr17-87265106-4	chr17	87264634	87265634	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 1 of 4)	intron (NM_176808, intron 1 of 4)	813.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	7.10203374638438	7.27760330222596	6.72930391408576	7.0608798637941	7.24118363256606	7.04391163470893	0.082749650239331	0.759118091988383	0.940311236380535
Merged-chr10-52331825-2	chr10	52331325	52332325	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	50299.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	1.91945838464976	2.15506740539474	2.09844295882035	2.17669352229357	2.08199229933105	2.30512185467295	0.930365147118657	0.319802442133361	1
Merged-chr2-90476183-2	chr2	90475683	90476683	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2991.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.35430325091855	4.24661212478389	4.33439789829264	4.15288446849986	3.84087800718955	4.27179594164997	-0.621146822494427	0.202676569084423	0.59252027125208
Merged-chr2-164455989-3	chr2	164455495	164456495	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4976.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	4.29686639221433	3.75578927501746	4.0986633118846	4.26409687396491	3.95910127719922	3.91840857718605	-0.0368650972994486	0.945111951138441	0.987875414328125
Merged-chr13-67637376-4	chr13	67636879	67637879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183146, intron 1 of 3)	intron (NM_183146, intron 1 of 3)	374.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	7.17740456054479	7.99158522212985	7.748520097308	7.80674424050982	7.74717147252555	7.26537236899647	-0.0752789628782808	0.80644993955117	0.954171808010888
Merged-chr14-54376108-4	chr14	54375600	54376600	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	15259.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	5.62496873625715	5.53349233316726	5.79973614168181	4.97942967733732	4.93720863360725	5.1355080426276	-1.2775509554733	0.000274285549787302	0.00646446599137907
Merged-chr5-129779219-4	chr5	129778688	129779688	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133900, exon 3 of 8)	5' UTR (NM_133900, exon 3 of 8)	8065.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	3.41718025871719	3.48721689961168	3.48472245774413	3.52342276451225	3.5146888468208	3.50076394008578	0.187694127774708	0.741542104851288	0.934868190792048
Merged-chr8-83749975-4	chr8	83749465	83750465	+	794.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8654.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.54062808377011	7.48363003284285	6.98319722154672	7.05767181257794	7.50855362852138	6.98323674771281	-0.225604895483804	0.442100723513197	0.803076081297089
Merged-chr19-60805074-3	chr19	60804561	60805561	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-6494.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	2.6380191410561	2.74818217067226	2.54015343552011	2.91444060720119	2.58606428822692	2.807036803418	0.676641611760792	0.384013113273171	1
Merged-chr11-101552730-4	chr11	101552237	101553237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	83.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	8.61073868206913	8.74089993857473	8.01145820393865	8.54342879392307	8.79579078880685	8.17985040343757	0.0525752733101295	0.854372134236943	0.965987623019113
Merged-chr19-40658531-2	chr19	40658031	40659031	+	985.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-1239.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.09155827858724	4.39291225995	4.0475003542175	3.91210414828707	3.89834565674393	3.91486857084493	-0.841422431687421	0.093527587485082	0.407276716530181
Merged-chr7-75669601-4	chr7	75669063	75670063	+	963.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-178775.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.7401912484485	6.78245302105888	6.50784877502798	6.60106062588874	6.45994765916653	6.51296541576529	-0.264752115233237	0.316309327023917	0.710357790154276
Merged-chr11-77386538-4	chr11	77386027	77387027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	38247.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	5.70177423889662	5.6498423280918	5.57058916674733	5.8508278442151	6.12678912724787	6.14455248251803	0.713120214861067	0.0211795820176716	0.167734268338089
Merged-chr5-21358818-4	chr5	21358312	21359312	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-13861.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	5.30215349293798	5.41580825409749	5.16881629421198	5.43235174647834	5.92274342368577	5.04667147297919	0.445253831939071	0.27140439824845	0.668749953195447
Merged-chr17-29442246-4	chr17	29441769	29442769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48776.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.90830460125388	5.48984420417902	5.69307492805433	6.27524667145255	6.01671289064564	6.09611921331975	0.741901842009235	0.0200950201313118	0.161959166513579
Merged-chr7-19357346-4	chr7	19356843	19357843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007948)	TTS (NM_007948)	2140.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	3.28609169160921	3.54299835425812	3.90411029262431	3.3507649036658	3.52592868638384	3.59168775881045	-0.36508934974453	0.557180259063962	0.864089443400196
Merged-chr7-3692263-6	chr7	3691802	3692802	+	889.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029934, intron 1 of 7)	intron (NM_029934, intron 1 of 7)	1223.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	5.17919747946106	5.29471182338404	5.7299366293994	5.29015045688899	5.43159803673386	5.33295451190917	-0.104119716595156	0.776333970801341	0.94480820353868
Merged-chr8-85515613-4	chr8	85515090	85516090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22973.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.90353244622771	5.82772600145982	5.82135788490449	6.06338097266891	6.070528781691	5.72348643288873	0.212489382801221	0.488944189506843	0.829423271678195
Merged-chr8-80950467-1	chr8	80949967	80950967	+	596.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	64439.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	5.70018773013571	5.72680686781292	6.10256791075773	5.96217559653289	5.90691252638234	6.14222145368056	0.277314710479781	0.379956595539073	0.762204638031028
Merged-chr1-43816934-2	chr1	43816434	43817434	+	598.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	10774.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	3.57970509609531	3.81176637037478	4.05994027368406	3.86384715653345	3.84432689595807	4.03772098857961	0.282864198219442	0.600522027954688	0.881705413029542
Merged-chr10-86949293-4	chr10	86948818	86949818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	intron (NM_138673, intron 17 of 68)	58624.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	5.0852643211834	5.19898068718051	5.29905662659457	4.96527071280474	5.03896817030155	5.3021107323726	-0.189993284132376	0.605233098487671	0.883468759932492
Merged-chr9-123991706-3	chr9	123991201	123992201	+	685.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13293.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	5.27962652468876	5.26084724049658	5.46754447487708	5.09654551692336	5.16005718316942	5.55512671069465	-0.117760876844576	0.747376162088341	0.936600911319824
Merged-chr10-41580032-3	chr10	41579550	41580550	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 35 of 47)	intron (NM_001358562, intron 35 of 47)	12034.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.52669317173125	3.38023499402903	3.63964873904017	3.93759974822155	3.85568251528172	3.81465415303562	1.22916482706289	0.0258548133107587	0.190636004072805
Merged-chr12-108333211-3	chr12	108332693	108333693	+	880.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1123.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	3.76683524097345	3.80226368451902	3.79134168994521	3.51128387125659	3.61104795471472	3.65501283443784	-0.662029898653438	0.222112359579265	0.617038101491437
Merged-chr7-3286198-4	chr7	3285696	3286696	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2842.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	2.90275351760118	3.16421998597569	3.07681063863274	3.02848045411924	3.06908706128538	3.03026391894828	-0.0415228159206013	0.95057061003312	0.988444308820256
Merged-chr1-156036099-4	chr1	156035622	156036622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160182)	promoter-TSS (NM_001160182)	86.0	NM_001160182	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	9.0497672438318	9.04727952073357	8.51630630643004	8.74052860410947	8.890496919918	8.6967120362959	-0.164925233891733	0.488367336244374	0.829121407729324
Merged-chr9-100458463-4	chr9	100457971	100458971	+	950.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	28002.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.34039996039457	6.45983527597593	6.70828603731964	5.9468483994079	5.63410967026518	5.98593031296096	-1.10286752251425	0.000307062472217659	0.00710710825821614
Merged-chr4-126401158-3	chr4	126400653	126401653	+	857.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 5 of 18)	intron (NM_153402, intron 5 of 18)	28389.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	3.45758488422789	3.88140614460216	3.50561997794284	3.47962876171205	3.67767576909157	3.52089741339217	-0.241214179857967	0.685418975998479	0.916264475254709
Merged-chr4-32588419-4	chr4	32587939	32588939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13943.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	3.97487719270551	4.09231260612622	4.09397240319954	4.04999491140487	3.83537578019688	4.20656391466768	-0.0724283929268367	0.884757084532241	0.973538624783452
Merged-chr2-154569229-4	chr2	154568725	154569725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291105, exon 1 of 7)	5' UTR (NM_001291105, exon 1 of 7)	201.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	7.28821604924938	7.16762344478782	6.94091345393668	7.05430159057148	7.03660697251942	7.13257137080755	-0.114974674906121	0.640977216712766	0.898687924380943
Merged-chr9-107888569-2	chr9	107888069	107889069	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028369, intron 1 of 5)	intron (NM_028369, intron 1 of 5)	440.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	5.01571700774511	5.0305165894895	5.31499433320144	5.11373865548653	4.83190802403757	5.13144200718037	-0.19974028016557	0.601010534485676	0.881855262262798
Merged-chr15-6412217-2	chr15	6411717	6412717	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	B1F|SINE|Alu	25469.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.18088810484348	6.47900870460867	5.88578617125964	5.85675942077864	5.79213034537864	6.04349915858492	-0.555322336759768	0.084127283979268	0.383754347094289
Merged-chr3-51796573-4	chr3	51796062	51797062	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135383.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.058596419407	4.79816613799477	5.10923557178159	4.84546851820617	4.79674711243037	5.23430453141107	-0.0629097764477651	0.875493475659221	0.971052726689041
Merged-chr19-10831928-8	chr19	10831428	10832428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1870.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	7.00184800348792	6.66063229250754	6.68491012560372	6.35472613612915	6.46120085469349	6.37081765042425	-0.632132917179947	0.0205554561404567	0.164328722271448
Merged-chr2-27745795-2	chr2	27745295	27746295	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	35212.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.73655126187892	4.64022916695571	5.24490770532872	4.44976557810844	4.91406323703259	4.82757292916973	-0.318399342445297	0.481524549030437	0.825121444939066
Merged-chr4-41275466-4	chr4	41274958	41275958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	-323.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	7.18566021482712	7.52463256040935	7.27150064539619	7.47093934220291	7.45439149655596	7.00521804529778	-0.00283813667509653	0.991483822107547	0.99826611332009
Merged-chr4-42880593-4	chr4	42880088	42881088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6354.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	5.64203037298411	5.71999081810724	5.89003669108801	5.19896659538101	5.06224694769368	5.58744904599454	-0.888340167652781	0.0124187833223018	0.117092591805336
Merged-chr1-86529779-2	chr1	86529279	86530279	+	794.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360830, exon 4 of 5)	exon (NM_001360830, exon 4 of 5)	3222.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	3.65867982932338	3.359437704499	3.59928882776251	3.61821552867816	3.60893510978799	3.56234060513099	0.193481917688773	0.735074653718822	0.932617455907478
Merged-chr9-35046099-2	chr9	35045599	35046599	+	876.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009178)	TTS (NM_009178)	-70629.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.66344603980311	2.45379483368716	2.88865183804428	2.4360139707623	2.56368981227496	2.66840194096846	-0.660801734365853	0.413657121821319	1
Merged-chr3-130730379-4	chr3	130729878	130730878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	20.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	7.87937737371602	8.11350413177932	7.53426854848098	7.7891325464821	7.70799415212266	7.63092890012157	-0.230709888422735	0.357106546684685	0.743726917541594
Merged-chr9-65493084-4	chr9	65492606	65493606	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30405.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	3.84006273879501	3.86824051945706	3.66867248665737	3.73377813614667	3.63840472033651	3.62972717986639	-0.441316782860122	0.412655339469937	0.784551818322662
Merged-chr14-26643429-4	chr14	26642922	26643922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	5288.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	6.28379938803509	6.22964007392407	6.17045813614609	6.2391799204092	6.3701414109208	6.27236434831238	0.111268065008652	0.685202655093403	0.916197022353588
Merged-chr2-32450000-4	chr2	32449503	32450503	+	977.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	-454.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	6.32617799477565	6.24428521134994	6.46160432673124	6.44285754602429	6.77227798442548	6.94500177114595	0.628149406839807	0.0275292743990736	0.197845557453629
Merged-chr2-113399115-3	chr2	113398622	113399622	+	846.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-41942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	5.66640283218427	5.62579586329564	5.38570299080789	4.88250657395811	5.20271368627095	4.75060394530834	-1.18885713836918	0.00215319349689164	0.032640357895675
Merged-chr6-72989251-2	chr6	72988833	72989833	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30585.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	2.16003627364232	2.13009889421242	2.43450541512391	2.20575607374773	2.09515453809521	2.25613738199361	-0.413769079025134	0.640901903237435	1
Merged-chr4-95924923-4	chr4	95924414	95925414	+	915.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 15 of 15)	L1_Mus1|LINE|L1	42121.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.23321306331117	3.18559131332343	3.28312261434513	3.67826004874349	3.62882951349916	3.73600169799236	1.72702606015752	0.00390187508171392	0.0509761692258207
Merged-chr6-97820824-4	chr6	97820338	97821338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	13780.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.92415435753802	7.82590112285875	7.44996400648307	7.88114532021968	7.99999453683782	7.57042329481223	0.114567956634239	0.656242407590278	0.904602840326388
Merged-chr6-65590346-4	chr6	65589869	65590869	+	969.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001495)	promoter-TSS (NM_001001495)	-29.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	2.89627606866249	2.81803548269719	3.13421712906636	2.9212694970205	2.70677162466723	2.98002393111495	-0.394209721146069	0.58325386730863	0.87400013033251
Merged-chr17-10725073-4	chr17	10724573	10725573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115118.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.70222407610476	4.16603529583493	4.39531559128553	4.20280760892541	3.80523463489464	4.09640812122801	-1.10493862003137	0.031156192462485	0.213809852570594
Merged-chr11-31871438-4	chr11	31870927	31871927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290676, exon 1 of 9)	5' UTR (NM_001290676, exon 1 of 9)	487.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	7.37236478765206	7.63508728315103	7.1550949128769	7.41559012003593	7.55660717997663	7.47708675263448	0.108337454853429	0.664317733193657	0.907585158243155
Merged-chr13-22044356-4	chr13	22043865	22044865	+	962.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178198)	TTS (NM_178198)	1135.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	4.55403033080107	4.54383705715533	4.52162857599614	4.69868052736754	5.06311494717275	5.16923380199196	1.02739269157043	0.0131695209987747	0.121864935861438
Merged-chr13-34204489-4	chr13	34203977	34204977	+	840.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 4 of 10)	MIR|SINE|MIR	41513.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	3.15828942250549	3.19392235646425	3.30270931042005	3.35015482525565	3.2675548149704	3.26072397484175	0.320421495193339	0.602501500826857	0.882349532183277
Merged-chr3-96487412-2	chr3	96486912	96487912	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35106.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	3.50364823064341	3.61440203478146	3.7628597336276	5.06039416511652	5.22994563816223	4.76945316823919	4.41589857271003	6.82851087296836e-13	1.34323104661454e-10
Merged-chr2-90846526-2	chr2	90846026	90847026	+	753.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	-629.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	5.26719062857658	5.40650628679211	5.59031415210539	5.11223958303887	5.58564162555797	5.06234317759549	-0.251745999547299	0.511437274511809	0.841400291314575
Merged-chr3-96278188-4	chr3	96277695	96278695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8495.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	5.03735182697433	4.92883289010441	4.61618411940603	4.6089070980593	4.43888337287848	4.55439965930233	-0.825047632206871	0.0492786692551899	0.282159638300576
Merged-chr6-39779406-4	chr6	39778936	39779936	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31500.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	6.66172718539039	6.89064701675715	6.78330231657357	6.68962905963322	7.04157506318307	6.98407084856865	0.206559599229614	0.433761531562529	0.797967674446634
Merged-chr19-6340123-4	chr19	6339625	6340625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 10 of 10)	exon (NM_001168488, exon 10 of 10)	-1035.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	6.31822410009795	6.15338747961149	6.48561831368112	6.28848851312243	6.86287954575246	6.39920892459476	0.381157873465822	0.218694334591488	0.612842023126276
Merged-chr15-101973887-4	chr15	101973391	101974391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19604.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	6.37190874937629	6.67860888005988	6.90870408570687	6.57949641794251	6.67639800752142	6.72344220357159	-0.00485732885397848	0.986253838932879	0.997033990984076
Merged-chr5-130219642-4	chr5	130219141	130220141	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081394)	promoter-TSS (NM_001081394)	-103.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	3.84225393951506	3.95028022985797	4.12357316675916	4.17243189124582	4.13832897136941	4.27948965940292	0.65163764281197	0.179898954218003	0.561373792708479
Merged-chr3-87804245-3	chr3	87803765	87804765	+	915.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011832, intron 6 of 21)	intron (NM_011832, intron 6 of 21)	7314.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	2.26798108830959	2.27607137280059	2.3316989319659	2.4016862174967	2.50896218032765	2.53467696286705	1.25910014480536	0.128982314273636	1
Merged-chr9-66599793-4	chr9	66599310	66600310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6695.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.89650053142784	5.7921752437339	5.74678696215582	5.7838805664815	6.06103373520576	6.17573223747518	0.34618526629421	0.263424834854232	0.661383847170923
Merged-chr15-59646396-3	chr15	59645897	59646897	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.28298976255229	5.25750608407861	5.08630054697657	5.0495768201036	4.87767315610573	5.45750733959444	-0.166102759450023	0.668992650990873	0.909463631670374
Merged-chr11-120633653-4	chr11	120633162	120634162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-115.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	8.28265323501465	7.70339030211968	7.29654337260889	8.0466406003274	7.60482494406331	7.47060822304796	-0.14324838268052	0.659932455521211	0.905759336231075
Merged-chr16-21644048-5	chr16	21643565	21644565	+	855.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	50600.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.37380050813189	5.84385974373404	5.92610594856801	5.1453865924504	5.45182694288395	5.30168516004851	-0.796455070164671	0.0302248112000603	0.209963774447706
Merged-chr13-33077304-6	chr13	33076836	33077836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6767.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	6.28280331360702	6.05200701536539	6.22859009475279	7.525668691469	7.5023352437577	7.4444926838669	2.02249744552032	1.01782082168794e-15	3.22018383768099e-13
Merged-chr19-5834001-4	chr19	5833517	5834517	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	11461.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	4.83903434633287	4.59144905356032	4.73636676792253	4.26034746540576	4.42937690129537	4.3032034371765	-0.974774783734765	0.0258303792500417	0.190554422498663
Merged-chr1-152619069-2	chr1	152618569	152619569	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	6148.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.24912598126774	5.23217702494842	5.33557496956814	5.12565586284779	5.27449101926766	5.3984140116496	-0.00566112250444244	0.987044270187071	0.997161899445921
Merged-chr17-27552824-2	chr17	27552324	27553324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3750.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	3.4318898287897	3.07223259224131	3.24106956932239	3.30797850512855	3.07093339954661	3.36906627011669	-0.0317780980821421	0.961173242780722	0.990463353961952
Merged-chr9-121301151-3	chr9	121300659	121301659	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3657.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.93678986476441	3.63963737966312	3.87824529098393	5.44782973733397	5.6721107557792	5.04363294616946	4.3690840484885	1.49960171875575e-14	3.86312259486775e-12
Merged-chr17-45703477-3	chr17	45702973	45703973	+	844.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17124.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	3.06032469712023	3.3668601866781	3.63839397545672	3.98397441972872	3.63670782323412	3.60335355486609	1.36834538268179	0.0360919942710361	0.233634873137107
Merged-chr4-118107460-3	chr4	118106993	118107993	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	27453.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.99819549802506	8.3579724761842	7.44276983401558	6.79901702850548	6.89399562129479	6.05964050691131	-2.01100296952531	0.000884909827383408	0.0163880651940616
Merged-chr1-171230368-3	chr1	171229870	171230870	+	872.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 3 of 4)	RMER20A|LTR|ERVK	3979.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	5.19938890028142	4.89544874902314	5.60025502556824	5.64211346464954	5.40279434175648	5.38428013848074	0.455455834158341	0.239882036519587	0.6368091379092
Merged-chr13-98997234-4	chr13	98996725	98997725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12660.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	5.70363859002636	5.87417081273853	6.05145515578206	5.61792142776815	6.16327759704466	6.0027259998049	0.135287503589395	0.684980939400729	0.916067601106687
Merged-chr7-66080373-4	chr7	66079899	66080899	+	766.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024439, exon 2 of 6)	exon (NM_024439, exon 2 of 6)	750.0	NM_024439	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	6.63805139030535	7.12722008208096	6.53125342355148	6.85357944854266	6.9191806432984	6.69612483368711	0.0414162035104837	0.8873499319804	0.973836995667151
Merged-chr3-31084137-4	chr3	31083632	31084632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep605|LTR?|LTR?	-10926.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.31468075776534	7.09343232907143	7.06746569589901	7.3725844342501	7.43026910845346	7.07156662656753	0.212933436011042	0.397680923520602	0.774584135868499
Merged-chr19-5877272-2	chr19	5876772	5877772	+	601.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	-550.0	NM_001361973	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	6.4884969182586	6.41167955773939	6.73159309771486	6.47591625902413	6.65112157352437	6.58451736665298	0.0530889199908698	0.844361549978748	0.96373428957366
Merged-chr15-38297584-6	chr15	38297153	38298153	+	803.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289471, exon 2 of 5)	exon (NM_001289471, exon 2 of 5)	2247.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.50020331889098	4.61856086706563	4.7146942998236	4.54818970844727	4.48601646461687	4.41166096233531	-0.302689133191949	0.47395371290118	0.821205267123699
Merged-chr13-37858735-2	chr13	37858235	37859235	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-29699.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.4661183385615	6.91743740558231	6.84803628708124	6.60138214449102	6.53148039252024	6.24517864413335	-0.44662297975245	0.125622909372554	0.474191879348443
Merged-chr9-25507044-2	chr9	25506544	25507544	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	25447.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.56850774715825	3.38109853198914	3.24730940127237	3.60327056412936	3.26138791064842	3.38083378689652	0.0412119612549767	0.947212854050578	0.988008807662239
Merged-chr2-90557297-6	chr2	90556791	90557791	+	774.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L1MC4a|LINE|L1	23356.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.86955791634083	6.93929901054494	6.93390729748914	7.01068414469012	7.32271316360076	7.21014510688006	0.420606224312223	0.08784404018407	0.393270574391268
Merged-chr10-58446024-3	chr10	58445510	58446510	+	959.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-842.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	8.78249925818902	8.89048362122573	8.46493110656654	8.78621533849344	9.22171953215791	8.78208417848601	0.305104302042208	0.211540187530764	0.603945120913907
Merged-chr7-127934748-2	chr7	127934248	127935248	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001319147, intron 10 of 14)	intron (NM_001319147, intron 10 of 14)	-4635.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	4.25483736365566	4.36099451046022	4.67835096337284	4.26053757038606	4.19733740067741	4.81163021762975	0.0152718076532266	0.975296812380677	0.994454548709104
Merged-chr7-28446655-3	chr7	28446184	28447184	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022024, exon 7 of 7)	3' UTR (NM_022024, exon 7 of 7)	-5301.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	2.53525554194857	2.46339180511693	2.59164080849609	2.57362626747985	2.39015526955424	2.6651084315064	0.0806464369852868	0.918611691151763	1
Merged-chr18-9504335-5	chr18	9503820	9504820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54166.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.69862232402463	6.6616361818287	5.72674870942751	6.45958960218842	6.24011238581287	5.25415903078915	-0.583970108436522	0.497700420651535	0.833770467452658
Merged-chr9-40320146-3	chr9	40319668	40320668	+	826.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1155.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.76515554761294	6.72886144227777	6.0412861013577	5.70900275565366	5.83786672510688	5.64277838230547	-1.39484658051495	3.30567857548567e-05	0.00111767128366116
Merged-chr2-157688685-4	chr2	157688141	157689141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-48760.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	4.30044397302045	4.15576593592403	4.25527211803718	4.43563177722074	4.18695903161429	4.32310570967412	0.210648779358508	0.645823480544023	0.900747249687508
Merged-chr11-74828128-2	chr11	74827628	74828628	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2796.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.74376880430643	7.70326869534753	7.67546895648649	7.310482359351	7.47615106238083	7.40962059986139	-0.446655248146712	0.044129788942579	0.264321298469199
Merged-chr8-84465751-1	chr8	84465251	84466251	+	932.0	f0_balb.idr	intron (NM_001252060, intron 3 of 47)	RLTR12B|LTR|ERVK	50387.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	3.19190507147191	3.60233351069775	3.60093030872923	3.1826934270962	2.96216701756775	3.30154021082918	-1.34145901313144	0.0457270085093431	0.270089622355711
Merged-chr2-167491174-2	chr2	167490674	167491674	+	819.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356523, intron 1 of 3)	intron (NM_001356523, intron 1 of 3)	-1471.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	4.02865824074952	3.90875464331284	3.90446590487202	3.97531615977002	4.19228438585545	3.87025039602434	0.236987199719431	0.640550330358135	0.898483031109382
Merged-chr8-33662953-1	chr8	33662453	33663453	+	1000.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	9715.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.19025777526884	2.21883726911807	2.52586893653217	2.6227450513986	2.6376654752569	3.01365868812797	3.11410644078076	0.00183015142035712	0.0288360612355757
Merged-chr6-31214602-3	chr6	31214095	31215095	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	URR1B|DNA|hAT-Charlie	3879.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.01004297132619	3.61735273093132	3.62862778345638	3.69612601156063	3.70142987631618	3.40634894208569	-0.518925867213787	0.380421554936094	0.762534569734688
Merged-chr13-62383177-4	chr13	62382667	62383667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162910)	promoter-TSS (NM_001162910)	7.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	3.75165045242441	4.15579271151183	4.36535259108731	4.39188337077298	4.41551453314801	4.39033025257703	0.791515971501891	0.115634550844941	0.454022364177327
Merged-chr3-9752430-3	chr3	9751911	9752911	+	825.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	81268.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.24806442513345	5.11112641144884	5.04256198136042	4.89636694478222	4.72452423988405	4.81046325536977	-0.723580670859928	0.0555253448322904	0.303020456011361
Merged-chr11-117990753-2	chr11	117990253	117991253	+	763.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3896.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	5.31213504291652	4.92933370194728	4.60056053085845	4.91272013310834	5.14270401323528	4.84215520448972	-0.0275331234619499	0.949148558907205	0.988169196639905
Merged-chr9-40455606-7	chr9	40455112	40456112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172768, exon 1 of 20)	exon (NM_172768, exon 1 of 20)	152.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.91496045272693	6.15203987335329	5.90845161802324	5.77143154727513	5.79624745407073	5.74128108829649	-0.408103539673436	0.178945919104705	0.560321608436476
Merged-chr7-101884334-4	chr7	101883835	101884835	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-1525.0	NM_001291352	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	4.06468132480267	4.16148376243684	4.40499093397668	4.14395500374238	4.07939159649025	4.26200208034692	-0.142177295674922	0.765712979230666	0.94223032859205
Merged-chr7-116410070-2	chr7	116409570	116410570	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33388.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.57830408062038	6.95541019476684	6.44956453224924	6.29962665121343	6.58454474347373	6.41411686418141	-0.392500327001696	0.181610211334461	0.564057719483724
Merged-chr9-78050572-4	chr9	78050087	78051087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1371.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	4.68752857004738	4.1410168844562	4.21891219325977	4.4627294921342	4.46753224120759	4.18992517276878	0.0139841678055946	0.977294546064871	0.994771164142869
Merged-chr12-52372965-3	chr12	52372472	52373472	+	933.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	107637.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.72514721742178	3.68741165004312	3.65077622438083	3.9879060830431	3.92749308718016	4.15604439082911	1.06285942850565	0.0419787935172555	0.256440162321694
Merged-chr13-6639774-3	chr13	6639279	6640279	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	B1_Mur3|SINE|Alu	8992.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.0183227571827	2.90709985515672	3.28180922676009	3.05736643826156	2.82404040993946	3.07715224004029	-0.389868697787454	0.575957941291958	0.871477821847201
Merged-chr19-21284941-1	chr19	21284441	21285441	+	549.0	f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	12663.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	2.9149135268976	2.53414626467904	2.85606917581128	2.51922415409527	2.7424702920403	2.68497175329205	-0.657451962137313	0.40719362099138	0.781388040300056
Merged-chr11-82952800-4	chr11	82952298	82953298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183201, intron 1 of 5)	intron (NM_183201, intron 1 of 5)	696.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	8.2408411610774	8.4253614830014	8.11754233347729	8.32203291862313	8.66236879153587	7.99584736702696	0.13246801815298	0.608905195546049	0.885053989692691
Merged-chr17-31291071-4	chr17	31290562	31291562	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	5.26462873181106	5.15383955363787	5.59861344663601	5.1428542449852	5.09402293746737	5.03134843540701	-0.505673342881234	0.171724408765899	0.550036361713484
Merged-chr19-34234109-4	chr19	34233603	34234603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360716, exon 6 of 11)	exon (NM_001360716, exon 6 of 11)	1478.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.41547223571255	3.55313717272747	3.69035868527172	3.91464315724339	3.54204838998557	3.60172340119728	0.497248289032174	0.388462768079229	0.768319705403768
Merged-chr5-99243507-3	chr5	99242942	99243942	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	9485.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.55554655953419	6.50343829018784	6.76656628209742	6.57835533583547	6.79406074140428	6.89624174920553	0.243736918186319	0.362111063168955	0.747675323428227
Merged-chr19-11912912-4	chr19	11912412	11913412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 1 of 18)	CpG	513.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	8.47640190960563	8.44942323260621	8.10593981569751	8.48838578208346	8.40956630615998	8.03518557900871	-0.0397259833826241	0.870214765640378	0.970058028390413
Merged-chr15-58871598-2	chr15	58871098	58872098	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	3.53378308473269	3.56343390097692	3.54579362498916	3.45480166358521	3.43930082635116	3.45223427082757	-0.368306139901221	0.517384698945387	0.844537090247943
Merged-chr19-40708824-1	chr19	40708324	40709324	+	564.0	f0_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	49054.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.83717109327535	5.41777141791905	5.91147226651842	5.40130571133359	5.68425160430011	5.65545196069074	-0.266890338539466	0.442843615683919	0.803396339134839
Merged-chr16-57559540-3	chr16	57559072	57560072	+	685.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	MIRb|SINE|MIR	10330.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.13510546417704	5.85675148395605	5.5275790343599	5.69728201908526	5.83721433864812	5.46531945186059	-0.339304325119589	0.332351905843473	0.723521765316285
Merged-chr13-74815949-3	chr13	74815448	74816448	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7188.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	2.61254394766887	2.6382023232382	2.94371692000566	2.77900004540983	2.43369360114921	2.6581631105878	-0.574671281343696	0.47051465809493	0.819495618343931
Merged-chr11-110436307-3	chr11	110435814	110436814	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MER20|DNA|hAT-Charlie	37212.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.93621985297134	2.7024855763811	3.10401435627417	3.39008053681658	3.28311494616667	3.50674403597597	2.18371601175984	0.00273120851203503	0.0391892391566495
Merged-chr11-82763436-2	chr11	82762936	82763936	+	558.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	885.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	5.66872563199064	5.70942801163021	5.9511676298782	5.75574278061925	5.71125374556198	5.61202331383432	-0.135885085743273	0.666753610182133	0.908367417591988
Merged-chr12-4592548-2	chr12	4592048	4593048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-460.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	6.69113695766749	6.8021008543972	6.48344571886918	6.60549945607568	6.68894606496108	6.23858378109945	-0.213919306710468	0.454734357600431	0.810532225390276
Merged-chr14-30593348-4	chr14	30592826	30593826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	16984.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.36786281320632	8.56243064910383	8.1438578571517	8.25887336137987	8.5678018736867	8.23932214879082	-0.00721947738929755	0.975695082423517	0.994540154302743
Merged-chr17-33929919-4	chr17	33929430	33930430	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	36.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	6.37680270254651	6.6923411233714	6.87103310319597	6.38203916748793	6.75928202212558	7.09357946964427	0.180873596403127	0.566241486312564	0.867257533499542
Merged-chr4-134095136-4	chr4	134094655	134095655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013706)	promoter-TSS (NM_013706)	-82.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	5.18370027323504	5.22204527243261	5.3809814477424	6.51902036379736	6.87920764090812	6.53943147020987	2.47836626704018	2.27157661914707e-15	6.67891686664273e-13
Merged-chr3-104511964-4	chr3	104511460	104512460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310698)	promoter-TSS (NM_001310698)	-42.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	7.21051821109018	7.51384614191583	7.39045616472124	7.35494070576297	7.29416885822498	7.32790368427046	-0.0790398260464615	0.737904235555647	0.933858424870961
Merged-chr14-25301296-2	chr14	25300796	25301796	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157889.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.44505574477345	2.66191955919508	2.73198098382234	2.33824772244373	2.49485506656284	2.68570485498923	-0.610183970978191	0.459063459989354	1
Merged-chr17-37028350-1	chr17	37027850	37028850	+	629.0	f0_balb.idr	Intergenic	Intergenic	-4952.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	5.7219589176715	5.80491387633059	6.03682967576608	6.00199446487374	6.20357592498277	5.73041286990419	0.270415663895017	0.400852408744684	0.777027234158915
Merged-chr15-58250191-4	chr15	58249674	58250674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-35282.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.01541036232077	6.71595635475738	6.70076912857055	6.78434675580483	7.20023257901887	6.56842929750607	0.107482457233678	0.717578376179103	0.927113669510706
Merged-chr16-10496203-4	chr16	10495731	10496731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	6450.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	3.79563717757029	3.70329679469752	3.72576401017976	4.1512573803991	4.17366855016753	3.74224302338297	0.939445912831158	0.0781094008556601	0.369049288876144
Merged-chr1-88567369-4	chr1	88566855	88567855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	15838.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	6.38090142955394	6.34808464518665	6.15658775760899	6.22722679427507	6.5969021980042	6.26022026980055	0.128849278296998	0.658591175426927	0.905014667687917
Merged-chr15-39785544-7	chr15	39785034	39786034	+	981.9206539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 8 of 9)	intron (NM_001164466, intron 8 of 9)	-11511.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	3.01240872823848	2.99393365679895	3.03025251290381	3.23722566872664	2.98635810896109	3.10313932231879	0.446229102687076	0.499952427324549	0.834866436005229
Merged-chr7-113180446-4	chr7	113179968	113180968	+	951.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-26997.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	4.93543493475854	4.92808720849122	5.39175752861919	4.75608507895842	4.84346668346554	5.22757914107329	-0.307024162510794	0.458238184585984	0.812946292086582
Merged-chr4-41073586-4	chr4	41073105	41074105	+	889.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24578.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	3.88490129736955	3.63956962987861	3.79344963757616	3.72713985497344	3.74116844855335	4.1832533268515	0.365057766128656	0.507751056638931	0.839388669874877
Merged-chr7-44853880-2	chr7	44853380	44854380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290694, intron 3 of 4)	intron (NM_001290694, intron 3 of 4)	-3266.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	6.0155309513811	5.92006976401991	6.40294535114046	6.15919818965129	6.29639849805175	6.77167494643935	0.512308549015558	0.120815902175254	0.464893155207108
Merged-chr8-83740737-2	chr8	83740237	83741237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	574.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.97918176006694	7.9351140011154	7.65868697827283	8.03859417551367	8.4470273138174	7.78919034017104	0.368945762307928	0.164536256199785	0.539123991728306
Merged-chr13-67527153-6	chr13	67526621	67527621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	-890.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	5.2512264986616	5.30700475260819	5.19555887153163	5.43764477725987	5.55462042422045	5.84101191019944	0.690443149556549	0.045633230673366	0.269791804594958
Merged-chr1-127207262-5	chr1	127206648	127207648	+	852.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	2162.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.80227895854317	5.61482655781708	5.35908456187042	6.15023989361311	6.17258871770424	5.76116722186222	0.77163829760773	0.02185022280621	0.171277752167604
Merged-chr5-43094583-4	chr5	43094071	43095071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138892.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.33671963006006	4.95925995001367	4.33511507272133	3.88674213840038	3.69858113590682	3.96179370736827	-2.11124698827368	7.63280016122027e-05	0.00225696530140304
Merged-chr7-16261124-4	chr7	16260542	16261542	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1502.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	4.88062200506714	4.48459676159848	5.52430122725308	4.41098465795808	4.57208939191129	4.98053083103688	-0.78908362180201	0.118911870852252	0.460977401690002
Merged-chr16-32672443-3	chr16	32671935	32672935	+	988.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-719.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	4.06536240920024	4.23113180065391	4.19986699396153	4.88688174482546	4.57839887659339	4.50002253362025	1.28821191361977	0.00462164809266822	0.0579910481395168
Merged-chr10-80150473-3	chr10	80149980	80150980	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 2 of 7)	CpG-1261	798.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	4.83630391348936	4.43527397505579	4.85430459821747	5.05477289213788	5.02929260832988	5.54979187943331	1.09591228795183	0.00999325408324461	0.100291724250225
Merged-chr5-113639429-2	chr5	113638929	113639929	+	838.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	MIR|SINE|MIR	4174.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.41055848416499	4.8593358483676	4.84215204168439	5.08595199483871	5.07340357220542	5.35899921965257	0.99245812706671	0.0160186069110876	0.138971561240515
Merged-chr19-24999467-4	chr19	24998963	24999963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028785)	promoter-TSS (NM_028785)	-66.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	7.37380539773843	7.1975773483077	7.43097104343699	7.40016300976118	7.0840679714801	7.248355762703	-0.128678616387369	0.599204258834988	0.880924908462167
Merged-chr6-129213743-4	chr6	129213261	129214261	+	772.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24284.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	4.54857352891832	4.45662495844187	4.57259442376632	4.58565389731039	4.25472560912962	4.96010432039769	0.229304051804608	0.622095446196644	0.890937721901588
Merged-chr7-35026077-4	chr7	35025572	35026572	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	30494.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.60877749848777	5.75600857141603	6.00172645778588	5.64174802775142	5.52907185516175	5.71113882627425	-0.303893178312261	0.349765003961036	0.73781839142071
Merged-chr7-67458084-4	chr7	67457561	67458561	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-85203.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.44395304017947	5.98175586935309	6.03929348948772	5.71437120752765	5.76725574915777	6.03597686393161	-0.00609244866536166	0.986021628729932	0.997029933218313
Merged-chr4-3780559-4	chr4	3780044	3781044	+	979.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	B3A|SINE|B2	55111.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.9921875661133	3.79987510909708	3.96420460709085	3.95045560061964	4.12885868328491	4.12734525039293	0.456567158876788	0.358914761475767	0.74519810754794
Merged-chr4-148074751-3	chr4	148074254	148075254	+	720.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	13310.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	3.3652141301772	3.28048299566096	3.76012159548097	3.29788183625075	3.57398351115907	3.47893602445522	-0.0704941956621669	0.909931486547783	0.979696874490038
Merged-chr15-30609674-2	chr15	30609174	30610174	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	ORR1A2|LTR|ERVL-MaLR	-429452.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.54343115225554	4.1506141263538	4.44031554521844	4.50129766387707	4.19669262343958	4.70207610650763	0.217935655497206	0.647641861963495	0.901510214793849
Merged-chr11-69088709-6	chr11	69088270	69089270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 1 of 4)	CpG	242.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	8.82545394187537	8.83476347634213	8.43406553160134	8.46733337333788	8.73977050269187	8.07726161903948	-0.345997202605565	0.187883918328218	0.573220587256787
Merged-chr9-106889370-2	chr9	106888888	106889888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029103, intron 3 of 3)	intron (NM_029103, intron 3 of 3)	-2388.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	3.54922054712261	3.43149966982917	3.54374550670535	3.67100478838526	3.59744197801502	4.04869362697623	0.927177337697103	0.107034738595814	0.436618615995709
Merged-chr13-9277442-7	chr13	9276899	9277899	+	997.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	874.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	7.56139906135207	7.46460025709273	7.34886541238807	7.38822199200873	7.183111399996	7.15666851115536	-0.321211700256863	0.17425692086074	0.553403610743454
Merged-chr11-32562874-3	chr11	32562381	32563381	+	977.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29615.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.18687552854494	6.29892559040082	5.9519669532506	6.27410874341821	6.08754814824344	5.65838163992707	-0.201712937899021	0.537848464593689	0.854867563479425
Merged-chr1-155084635-4	chr1	155084136	155085136	+	734.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1372.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.30525778334328	4.33288584665943	4.11699525667509	4.41454389716706	4.11980632852901	4.41491394520295	0.144788492152615	0.757459033842893	0.939883186830738
Merged-chr16-13780729-4	chr16	13780239	13781239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039521)	promoter-TSS (NM_001039521)	40.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	7.85233289335941	8.30209007094222	7.78347507523345	8.07074129905723	8.09963761200634	7.5407775554283	-0.100243368184724	0.718028847302042	0.927249469209724
Merged-chr19-4042317-4	chr19	4041829	4042829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181796)	promoter-TSS (NM_181796)	-108.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	4.36230507900801	4.44509340830759	4.55648903192135	4.1871431113181	4.39683099506616	4.54335749962003	-0.186937700268745	0.676134583814127	0.912421384593547
Merged-chr15-34442233-2	chr15	34441733	34442733	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163485, intron 3 of 4)	intron (NM_001163485, intron 3 of 4)	992.0	NM_009083	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	5.30223000115416	5.24231710324175	5.33275724191283	5.02605167264669	5.44245153729571	5.23887034945962	-0.0684635593377029	0.849850362632438	0.964746847431705
Merged-chr12-79642917-4	chr12	79642410	79643410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	281823.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.91417272038437	6.53986201768889	6.88433120094649	6.63116388004124	6.94935175972335	6.68560817710817	-0.0252284272067056	0.927635364823723	0.983626621893489
Merged-chr7-35053452-2	chr7	35052952	35053952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	MER5A|DNA|hAT-Charlie	3114.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.23535726923209	6.18900284443659	5.74268062549051	5.94612557450819	6.3288490187906	6.37206322483044	0.240122437206707	0.459102438147567	0.813392860074156
Merged-chr13-101840027-4	chr13	101839543	101840543	+	892.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71826.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.84508066855599	5.95495890190706	5.70313135720543	6.07531308012004	6.32640757663706	6.04415120748932	0.548476264315856	0.0710639474964414	0.349721371142885
Merged-chr1-39408864-4	chr1	39408367	39409367	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	41016.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	3.98795793326834	4.19127747471077	3.91292054098442	4.32247232168086	4.29358221617825	4.13740529629743	0.599325610759599	0.216826730484785	0.610409611218582
Merged-chr13-106760031-1	chr13	106759531	106760531	+	699.0	f1_c57bl6.idr	Intergenic	Intergenic	176927.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	2.60882190716769	2.6589692351003	2.73006410903411	2.50444839206423	2.52168033528112	2.74266598625462	-0.430406291103843	0.574378224644946	1
Merged-chr10-59324589-4	chr10	59324127	59325127	+	811.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	1331.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.26556713720503	5.88987393466519	5.92642885653468	6.03137332457392	6.10420850822187	6.29572490383688	0.736226943261122	0.0353493461447027	0.230856949533664
Merged-chr8-126628826-4	chr8	126628350	126629350	+	933.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35414.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.93029983791662	2.68713013986479	2.78954596966743	2.6154852784199	2.63510252211439	2.54173023745286	-1.13563385632695	0.14175502007406	1
Merged-chr11-34769554-2	chr11	34769054	34770054	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	14351.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	3.43097911117594	3.65915207713837	3.60668446769149	3.37955523976083	3.3542624837915	3.62503360172132	-0.432296915220119	0.461435590593867	0.814992635038861
Merged-chr2-135504231-2	chr2	135503731	135504731	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	78989.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	4.0564321811915	4.1469020182585	3.57148436431869	3.5675830650269	3.87531768632691	3.7596674868674	-0.664049150822	0.254595643188113	0.651643384054634
Merged-chr5-93264840-4	chr5	93264379	93265379	+	919.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	4.71640364562167	4.2900250023718	4.86480289945859	5.21246889087909	5.24846394144287	5.1388854698408	1.25476737617374	0.00250688498332513	0.0368213390454576
Merged-chr16-50397103-3	chr16	50396598	50397598	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	MER5A|DNA|hAT-Charlie	35291.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.73490308125111	5.70811406255278	5.89460996611958	5.74856683792377	5.94449768360884	5.49923057113718	-0.0308012960049745	0.924842766952564	0.983070278897208
Merged-chr1-33909936-2	chr1	33909436	33910436	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	1711.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.17145600427587	3.89532905606738	3.96632633471926	4.13035253591281	3.89412349403681	4.3469748231545	0.316422074973422	0.537724557055951	0.854779024899439
Merged-chr18-69664577-3	chr18	69664119	69665119	+	726.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-260940.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.21130560834586	4.02034816344522	4.49001260070533	4.27659293301836	4.06848132278524	4.12850915729873	-0.234747284809365	0.63149007622486	0.895175751516545
Merged-chr4-155812974-2	chr4	155812480	155813480	+	947.833374	f0_balb.idr|f0_c57.idr	intron (NM_207678, intron 1 of 10)	CpG	491.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	8.01957718408394	8.14395288460052	7.78579650848746	7.90334026463161	8.04097172066077	7.95642559697781	-0.0403552708131668	0.857600249442919	0.966767080388296
Merged-chr7-140115772-4	chr7	140115254	140116254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053119, intron 1 of 7)	intron (NM_053119, intron 1 of 7)	669.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	5.85565462059594	6.25297525218311	6.11651265896837	6.30810703099162	6.55444708288206	6.0403109766591	0.409308136856357	0.194991984207031	0.582706975359096
Merged-chr7-45451483-4	chr7	45450970	45451970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	8416.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	2.55900392170868	2.29944224966486	2.57007878076141	2.2406105259785	2.31908423576539	2.25711935867135	-1.35459384487994	0.12200374697152	1
Merged-chr17-24708836-4	chr17	24708361	24709361	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1208.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	4.36540000847519	4.08689745362199	4.51221390579352	5.07817211461049	5.70751379964446	5.25447279210647	2.42442257452166	5.2207910790295e-08	4.02605731328903e-06
Merged-chr15-99772528-4	chr15	99772080	99773080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028015)	promoter-TSS (NM_028015)	-65.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	5.0221607145609	4.87082436677044	5.38878633292428	4.86383789158655	4.55254213286007	5.06748422195836	-0.585364976627326	0.167337734930934	0.543072594412152
Merged-chr6-146633801-3	chr6	146633317	146634317	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 1 of 11)	intron (NM_026281, intron 1 of 11)	775.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	5.56220682787336	5.84340162383978	5.62157127233176	5.43523821075369	5.43078176184516	5.3917620536332	-0.500572152570291	0.128253257861582	0.478959520674409
Merged-chr3-95315758-1	chr3	95315258	95316258	+	1000.0	f0_balb.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	568.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	7.4440761556762	7.7432285922185	7.7618055442356	7.39514309727697	7.25920228886619	7.48307039591181	-0.407064132339504	0.0893385040758571	0.39703456962794
Merged-chr15-100755109-5	chr15	100754666	100755666	+	699.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6581.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	3.0065839509238	3.10874786910882	3.48828307691783	3.56975372025381	3.37989373038757	3.55869354889085	1.16447013511154	0.0740938488959012	0.358067195895583
Merged-chr2-32079586-2	chr2	32079086	32080086	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4119.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	4.36542232998155	4.81446280938453	5.01029658953027	4.98503782377086	4.80615283965663	5.50192959072069	0.805447306104732	0.0811425155353297	0.376853451253835
Merged-chr8-123027030-2	chr8	123026530	123027530	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	15254.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.86810799542965	6.95660761434018	6.59513955931157	6.71813254107212	7.39770249889676	6.65472538637073	0.250898887206785	0.431172152706273	0.796699513287963
Merged-chr2-50984014-4	chr2	50983513	50984513	+	638.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74329.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.73195094933058	3.91980066154993	3.87248178217527	3.71666930918113	4.01600830546712	3.94153285116126	0.179566090766648	0.732067219806226	0.931655063903171
Merged-chr9-85747878-2	chr9	85747378	85748378	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	B2_Mm1t|SINE|B2	1456.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	3.74452132877095	3.55954806623153	3.39249720887983	3.5232523339079	3.75000698207361	3.58076558740651	0.161109584651785	0.782355960804201	0.946484752418558
Merged-chr9-90259535-3	chr9	90259040	90260040	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	11229.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.61431401575885	5.75110029144116	6.08600086168479	6.07684660044672	6.07030795574042	5.99371831165647	0.405717199424171	0.194977405466811	0.582701972575294
Merged-chr9-86477034-4	chr9	86476531	86477531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	L1MB2|LINE|L1	9877.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	5.25542444343968	5.30763560344591	5.30914706408892	5.63606091103226	5.92034829807224	6.06337343363727	1.10581358061476	0.00091380441173613	0.0168102109498045
Merged-chr13-46907249-4	chr13	46906745	46907745	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	22473.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.08614731893136	4.03732972908526	4.30843232278979	4.37599668121298	4.46759736157853	4.86484409148893	1.14292922900714	0.0157455333097848	0.137410912696999
Merged-chr9-116160293-4	chr9	116159843	116160843	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	15020.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.54462818965899	5.37106537856598	5.40288920080946	5.13398188567124	5.11613411507444	5.14677820677968	-0.627321432849579	0.0689392886500785	0.343589151711934
Merged-chr1-51494069-4	chr1	51493570	51494570	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15671.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.83588320641124	5.89779010517581	5.6951988651588	5.89910583465753	6.0699018440991	6.09656984358202	0.358511101777847	0.233446521393702	0.629826270159681
Merged-chr13-36557525-3	chr13	36557022	36558022	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176955.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.37558717834961	2.44324560462115	2.47174238293715	2.47289392388676	2.39777133231356	2.66735518204358	0.507739431014183	0.527037833896758	1
Merged-chr13-101743395-2	chr13	101742895	101743895	+	716.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	B4|SINE|B4	24822.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.92690020657537	5.85894465782578	5.7200568112808	6.07986704312832	5.9594322170804	5.91156281988677	0.250044534805068	0.40394588043959	0.779162891641184
Merged-chr5-112355673-4	chr5	112355180	112356180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039228, exon 1 of 1)	exon (NM_001039228, exon 1 of 1)	353.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	5.02517572708127	4.74955850544035	5.16408065959821	4.88708058814184	4.81989689096449	4.81393093914961	-0.310587068067589	0.431602916622856	0.796971674333736
Merged-chr12-113016274-2	chr12	113015774	113016774	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	1766.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	2.87545222568974	2.72399243471712	3.04505581892168	2.8899777318141	2.6089465280623	3.42926296869256	0.605714712896211	0.448107617114577	0.807059277161683
Merged-chr5-123136604-4	chr5	123136118	123137118	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3989.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	7.55676615280514	7.37804483194216	7.3751807310392	7.63143485102767	7.83838277684214	7.54768643610618	0.35392967215292	0.130120628377073	0.482323812471726
Merged-chr6-42352115-4	chr6	42351674	42352674	+	936.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2346.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.37772627503686	6.17371935791943	6.21357001621778	6.38853509957885	6.34493308653742	6.66679058910394	0.336839249726668	0.234475902641897	0.630591822623526
Merged-chr7-141260910-2	chr7	141260410	141261410	+	789.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081118, intron 14 of 17)	intron (NM_001081118, intron 14 of 17)	5514.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	2.67247533554791	2.63264354551518	3.11249816548341	2.70493282676862	2.61584742394044	2.78910978152834	-0.595064272774553	0.440570908449294	0.801886710894642
Merged-chr6-134218062-3	chr6	134217571	134218571	+	704.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-178258.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.81118723379909	3.92510529949266	3.68610519803308	4.05304349774096	3.85111858575095	4.10962448316755	0.568912122207274	0.276061232689582	0.673393624422867
Merged-chr10-80077303-2	chr10	80076803	80077803	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	-1864.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.00027153963589	3.99884376537971	4.35759392216222	4.16553435528192	3.88390054701867	4.61160051608005	0.337554275012787	0.528444870793451	0.85053360857083
Merged-chr9-63108601-2	chr9	63108101	63109101	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	38379.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	5.24789207468987	5.25592509830643	5.1071278250761	5.31699362633587	5.39826851365557	5.27311574961098	0.24860921122643	0.472267596920748	0.820550293768681
Merged-chr8-72272942-3	chr8	72272453	72273453	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32935.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	5.51475970182046	4.79364292010756	4.96260922192809	4.60190282099689	4.18871822530975	4.60944351612048	-1.63180903416352	0.000717701345281324	0.0139236403679572
Merged-chr6-37601686-2	chr6	37601186	37602186	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	71513.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	3.25904887130614	3.47035052117656	3.41389249331571	3.63072466657954	3.17534242026731	3.42985269354164	0.146998210614699	0.814491055930404	0.956356054213745
Merged-chr18-69592583-4	chr18	69592084	69593084	+	881.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	246424.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.9352424271718	6.13237561216219	6.12351284053798	6.0545870171171	6.49561281316433	5.90281128425255	0.217351993811448	0.499568034513198	0.834582629264444
Merged-chr11-117810699-5	chr11	117810252	117811252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009304, intron 1 of 3)	intron (NM_009304, intron 1 of 3)	1085.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	6.66914609237393	6.78733268582384	6.96617733352838	6.77925240904749	6.89898083315122	6.95737049162947	0.112985790216774	0.65792553199489	0.904859102731141
Merged-chr11-51763674-4	chr11	51763157	51764157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025535)	promoter-TSS (NM_025535)	-6.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	7.26775629032739	7.59509452497726	7.07436655141279	7.25989486842314	7.25537170845872	7.02234355855855	-0.224365472833678	0.396499933801913	0.773652887901204
Merged-chr2-45246791-4	chr2	45246276	45247276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129334.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.899103452529	7.01697476958031	7.10808970242565	6.91432336137926	7.17030288167306	6.83768922068212	-0.0225962752660125	0.929617896616363	0.984182996007117
Merged-chr15-100129380-4	chr15	100128888	100129888	+	843.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-25008.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.84108130902679	5.70676807330193	5.05546317356224	5.67499304506525	5.77723895378302	5.51062293567243	0.132333502199906	0.729816707999717	0.930635866770147
Merged-chr16-93606804-4	chr16	93606291	93607291	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	3.90686922203085	3.64592316526812	3.54409256882466	3.91372441066331	3.81631975947428	3.93672351048352	0.549638856843122	0.314223335486613	0.708637665307082
Merged-chr15-102519412-2	chr15	102518912	102519912	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009319, intron 2 of 8)	intron (NM_009319, intron 2 of 8)	1220.0	NM_009319	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	4.29337612187389	4.23266373113363	4.59181030701487	4.54683258079242	4.29734977538303	4.49940228386537	0.195204293674642	0.667337651013616	0.908713240361683
Merged-chr10-52420498-2	chr10	52419998	52420998	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2951.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	4.86294913356534	4.99987503285228	5.2311350014914	4.65414191745447	4.46057727813137	4.46078864377238	-1.16132761613444	0.00515810668410832	0.0625012000831928
Merged-chr7-129575239-2	chr7	129574739	129575739	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16624.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	7.11610788491406	7.65415031805932	7.26329415050663	7.22570840063351	7.58694253660504	7.32072519782427	0.0319520248744026	0.907048470680907	0.978868492078838
Merged-chr12-86895209-2	chr12	86894709	86895709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10395.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.67358301129466	6.64640458472845	6.65339822491064	7.11438938865789	7.07563045357945	6.85479071086125	0.570124896848039	0.0225697056175787	0.174907335850562
Merged-chr4-149520240-4	chr4	149519719	149520719	+	901.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	1978.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	3.22860812656047	3.25162397396372	3.04212162075884	3.1274955592137	3.42279745320038	3.29555607855453	0.445925724343767	0.492161576533539	0.830934592569652
Merged-chr2-148530679-4	chr2	148530193	148531193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87158.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.2353197958024	6.1675499288069	6.11213637041161	6.13953787147732	5.95304430752567	6.46082489913519	0.0213382187300672	0.943924336300538	0.987495247303971
Merged-chr6-34870460-6	chr6	34870033	34871033	+	723.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	7387.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	7.36703610889503	7.50974243839608	7.30313458693055	6.97833559755799	7.20095585075497	7.32709145992069	-0.337044458962871	0.167729249382549	0.543771999165935
Merged-chr7-135736543-4	chr7	135736032	135737032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20153.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.18080938306624	4.25201434506922	4.73137163879933	4.6942105053812	4.58509585128776	4.9658369003195	0.859076556011618	0.0642299235678009	0.330188768515935
Merged-chr6-113046221-4	chr6	113045732	113046732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-70.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	7.84719923349974	8.11469641127445	7.85644713633593	8.04142109397748	8.38334216508636	7.83696232959121	0.237217489170496	0.345045066053935	0.73358863076367
Merged-chr8-91425592-4	chr8	91425091	91426091	+	870.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 3 of 8)	MTD|LTR|ERVL-MaLR	112066.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.8694932142695	3.72785283610035	3.77821141342524	3.6263617912559	3.57744082034615	3.84739474608294	-0.377566475466245	0.485111788754561	0.827336504644498
Merged-chr5-74792482-3	chr5	74791985	74792985	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89582.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.72884676952171	4.37453876167397	4.80414544713973	3.83770838345956	3.47284579961615	3.95809330623112	-2.66249481374308	1.93278386301432e-06	9.66484853808268e-05
Merged-chr15-97925019-4	chr15	97924540	97925540	+	969.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16744.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	4.6311716499331	4.50157230334274	4.49366408803621	4.95753752915025	4.90976241522764	4.77118062907941	0.790594936907425	0.0498906631353327	0.284296829075795
Merged-chr16-43106444-3	chr16	43105942	43106942	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	MLT2B4|LTR|ERVL	-140842.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	2.12116695283808	2.15860282142009	2.32784781626861	2.16430372921017	2.14695372876894	2.07259534560605	-0.51850051125211	0.561454940679888	1
Merged-chr1-43554522-3	chr1	43554030	43555030	+	971.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010879, exon 4 of 5)	exon (NM_010879, exon 4 of 5)	108779.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.16030422968209	3.18085985227748	3.11951832749971	3.11123927991556	2.82058715140583	3.19163674070189	-0.494877428269298	0.467587521767979	0.818056375344009
Merged-chr12-84752874-3	chr12	84752371	84753371	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20241.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	7.24848553760317	7.44376697184619	7.1572470215351	7.24014559714655	7.2959741195246	6.98715533906424	-0.156409119404039	0.530335208221276	0.851072941285938
Merged-chr12-79618119-4	chr12	79617611	79618611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	306622.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.38951727797624	5.36264651491295	5.51468234828923	5.45587401316436	5.07661857632633	5.54954683220716	-0.109307003798162	0.76062476136624	0.940948308759212
Merged-chr6-142756664-4	chr6	142756139	142757139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009908)	promoter-TSS (NM_009908)	-47.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	7.38474435692452	7.32973945570332	6.82536938305834	7.05280208841269	6.85825090376972	6.72276918108022	-0.498204205995416	0.0761626019764791	0.363275310132352
Merged-chr2-39004588-4	chr2	39004117	39005117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 2 of 3)	intron (NM_025592, intron 2 of 3)	514.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	7.33515517339124	7.30133312247288	7.02676904396434	7.31100016325635	7.03214799440796	6.68017018243334	-0.288677104982094	0.303598097083262	0.700122713774969
Merged-chr1-86587145-4	chr1	86586675	86587675	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172974, exon 2 of 8)	5' UTR (NM_172974, exon 2 of 8)	4254.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	5.38151881492192	5.2673433289173	5.24439146079182	5.32946481587428	5.23832809433627	4.82522946957135	-0.2822375133211	0.452810907254902	0.809457484278845
Merged-chr3-61306712-4	chr3	61306208	61307208	+	842.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57799.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	2.66852355002292	2.75967938637096	2.92840805882585	2.7837558946612	2.677307842568	2.9427172252545	0.0772391097826102	0.915924205538227	0.981201223155309
Merged-chr15-31615615-4	chr15	31615093	31616093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	13477.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	5.32760154104099	5.45279937106455	5.77651877247831	6.06786176366593	5.86876894900554	5.73637821733673	0.699218027067825	0.0364836505316464	0.235036512344165
Merged-chr18-9729818-2	chr18	9729318	9730318	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	(TG)n|Simple_repeat|Simple_repeat	22170.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.35841282568843	4.43592571953256	4.55276034731738	3.67295010968168	3.33316293905327	3.70496768010174	-2.94517495961348	5.13868801793998e-07	3.00477830356114e-05
Merged-chr11-106194251-2	chr11	106193751	106194751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-648.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	6.38543516484923	6.45500326460679	6.42615756576424	6.32072868557333	6.37749867642587	6.44920379181067	-0.0682449211008445	0.797115464409216	0.95167643470176
Merged-chr7-35754489-4	chr7	35753974	35754974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178704)	promoter-TSS (NM_178704)	-20.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	6.60965715060099	6.80436535903088	6.54470951342043	6.72698039541282	6.32402581527268	6.11447051648676	-0.385653391633461	0.201378091379048	0.590984054786189
Merged-chr9-65579101-4	chr9	65578582	65579582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	MIR3|SINE|MIR	1005.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.40947565817173	8.22636308226717	7.99698513212953	8.21922019278093	8.53139175355688	8.1759126712496	0.135890375632093	0.569811383069807	0.868897023832802
Merged-chr12-86082543-4	chr12	86082054	86083054	+	965.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199843)	promoter-TSS (NM_001199843)	-7.0	NM_029601	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	4.2451147489507	3.9530928475845	4.33760277895609	4.08017204492202	4.02033435842631	3.89135470713256	-0.514578553207347	0.305156130320451	0.701440130713669
Merged-chr17-28408042-4	chr17	28407533	28408533	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42817.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	6.13846326837611	6.06094478650441	6.26386928838395	6.14232589041052	6.612349763237	5.69395687339302	0.115590890527753	0.744063671544271	0.935881456525231
Merged-chr12-99956598-4	chr12	99956098	99957098	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7901.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.97413269557568	4.49851541968612	4.52919905455837	4.22049611601651	4.00250833464555	4.30998049467239	-0.477976530556238	0.34442660934111	0.733061754957285
Merged-chr15-76656352-2	chr15	76655852	76656852	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019396, intron 2 of 4)	GC_rich|Low_complexity|Low_complexity	542.0	NM_001357882	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	4.38706509460886	3.87016760240393	3.83210345801814	4.19376372525334	3.98394644331412	3.90448140360617	-0.0839231264358462	0.877223963873824	0.971507742080987
Merged-chr11-86683059-2	chr11	86682559	86683559	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-924.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	5.86940358359458	5.88222830784028	5.59692323367612	5.56028575015414	5.98527956931014	5.7431729321692	-0.0249131910139422	0.939931001316267	0.986753310597155
Merged-chr11-82016620-4	chr11	82016114	82017114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18963.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	5.40001187353495	4.69451430023448	4.68266086834998	4.82939059737611	4.60793315807958	4.62152074136858	-0.650579625723051	0.154654515844603	0.52390421792532
Merged-chr5-145199929-2	chr5	145199429	145200429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023322, intron 1 of 2)	ID_B1|SINE|B4	1953.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	3.3198441820483	3.5730935115229	3.47780589562516	3.399977777877	3.4034695742018	3.69994573670656	0.148126368663146	0.803926169303835	0.953557286986578
Merged-chr5-120611951-2	chr5	120611451	120612451	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029096, intron 1 of 2)	ID_B1|SINE|B4	638.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	4.9157970251974	5.04943838711169	5.08847233627701	5.23734726333387	5.12481428650752	5.25024053761197	0.386479775079899	0.283840590447839	0.681495289012097
Merged-chr19-4285678-2	chr19	4285178	4286178	+	773.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_130863)	TTS (NM_130863)	-2541.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	3.89598561517287	3.89618282582849	4.10960043153979	4.02133085290072	3.80679138650662	4.26283966114806	0.202090487938646	0.695987658406892	0.919291538728398
Merged-chr12-84747078-2	chr12	84746578	84747578	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26034.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	3.33967976594848	3.5438792528139	3.40044511034599	3.44309706054618	3.31255027306178	3.23856239024376	-0.374718589216619	0.536688378357206	0.854161295483793
Merged-chr13-58068796-3	chr13	58068288	58069288	+	888.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	33640.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	4.09572667192327	4.06938575794482	3.8071045712021	3.86437757409417	3.69444769032771	3.97934201527299	-0.498255559210617	0.340854858943119	0.730566001298075
Merged-chr9-107641313-2	chr9	107640824	107641824	+	937.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5982.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	6.71363066457426	6.70867886158207	6.9115941183371	6.9639067587553	7.01683367080885	7.16132163438332	0.418257532921787	0.0932029631326081	0.40657919757719
Merged-chr10-128369023-4	chr10	128368511	128369511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081040, exon 1 of 5)	5' UTR (NM_001081040, exon 1 of 5)	1026.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	8.60068042719083	8.2799844475605	7.93111491388401	8.32362892168824	8.3000304522584	7.91275193161219	-0.15333214331821	0.566837043602472	0.867634455258659
Merged-chr8-26435567-4	chr8	26435066	26436066	+	914.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277397.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	3.26216097009392	3.71514474434421	4.00355623345188	3.3638885223144	3.42787739289317	3.55171749416875	-0.849505246640419	0.182499515141688	0.565355871271703
Merged-chr9-58891029-2	chr9	58890529	58891529	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 23 of 28)	intron (NM_008684, intron 23 of 28)	67517.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	3.88266439154714	3.53017707930287	3.72066344138866	3.68472906560082	3.4562539506199	3.68708865787457	-0.381302751595791	0.502594952936646	0.836562439638842
Merged-chr5-140814610-4	chr5	140814105	140815105	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	RMER17C|LTR|ERVK	15826.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	4.56540860443631	4.75466219702665	4.76607750047836	4.65019398475856	4.34841584774879	4.67989273605787	-0.33242646838015	0.435905509349532	0.799403653016169
Merged-chr8-70606731-3	chr8	70606252	70607252	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	1562.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	4.51462890910024	4.53444097428965	4.03470081956483	4.81309991685662	4.77861872150394	4.76043624022071	0.93613989603194	0.0433824334666699	0.261690990567977
Merged-chr19-7341792-4	chr19	7341301	7342301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007928)	promoter-TSS (NM_007928)	59.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	6.92163945414408	7.06259308668156	7.21680941005412	7.17124270940533	7.33386381986124	7.07739146632943	0.209158291710663	0.39941473056958	0.775836330770912
Merged-chr2-73395675-4	chr2	73395174	73396174	+	733.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-9194.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	3.38856492048745	3.08236432359535	3.36067993459913	3.19427639308218	3.27095731768148	3.26446029053059	-0.154114326741281	0.807667779531565	0.954557080558103
Merged-chr7-127009628-1	chr7	127009128	127010128	+	545.0	f1_balb.idr	intron (NM_080638, intron 1 of 14)	PB1D7|SINE|Alu	4966.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	4.965979083554	4.80280626841873	4.83468339242361	4.60957381963931	4.68018273614697	4.89971164257913	-0.328433154632777	0.409852836327827	0.783037226945994
Merged-chr13-92678741-4	chr13	92678238	92679238	+	726.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	67600.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	3.70632080991352	3.80892611847595	3.89172938218397	3.83628832271891	3.95683959336331	3.75746601686645	0.189384913205409	0.717047386386253	0.926979087819795
Merged-chr5-113907163-4	chr5	113906650	113907650	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	MTC|LTR|ERVL-MaLR	1556.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	6.37366449198246	6.52025844295133	6.34018124399898	6.11715089650972	6.30385188480596	6.32230320804741	-0.276128475107602	0.318088621621009	0.711817713144205
Merged-chr7-90050026-1	chr7	90049526	90050526	+	1000.0	f1_c57bl6.idr	TTS (NR_110364)	TTS (NR_110364)	20867.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.15728025442196	4.03098930403391	4.24534326316051	4.37563684477041	4.02404565594939	4.73933969645202	0.688548699438516	0.175101150761423	0.554840197075627
Merged-chr10-125272203-4	chr10	125271721	125272721	+	882.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	36595.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.66516671723577	6.03487951437401	6.3490048527231	5.86145180111513	5.58786465024969	5.90758200408554	-0.442486279642324	0.201442419756666	0.590984054786189
Merged-chr13-110567706-3	chr13	110567203	110568203	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172659.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.24285933518856	5.34226277532535	5.11507227146296	5.50552863553357	5.408725124907	5.46960907365832	0.422577180853396	0.216121603754633	0.609553034390023
Merged-chr3-27192895-2	chr3	27192395	27193395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	9891.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.30402961779369	8.68338261678986	8.19047540835612	8.05735740384099	8.61305702427648	8.17144033792769	-0.145983845631184	0.583890879155448	0.874291745056083
Merged-chr6-72439567-4	chr6	72439034	72440034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	24.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	8.57367215076272	8.44102490154028	8.06364788516526	8.30708954271581	8.391321968978	8.20409467733414	-0.109313302122869	0.641931972349966	0.899238632894426
Merged-chr6-115666315-2	chr6	115665815	115666815	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	B3A|SINE|B2	9573.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	6.73272111412771	6.69603725050812	6.46292402295539	6.21585536755095	6.75845465468321	6.61067506024094	-0.140077156851976	0.633703948738049	0.896060120341977
Merged-chr10-96459377-4	chr10	96458882	96459882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157619.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.21008250831971	4.99295299869064	4.75783177104489	5.30910727203838	4.850800057327	4.86666371989927	0.041428494968641	0.920183287250214	0.982296874430043
Merged-chr15-5243272-2	chr15	5242772	5243772	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008965, intron 1 of 2)	intron (NM_008965, intron 1 of 2)	915.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.29338485318089	4.34843863507945	3.9587967798749	4.71347622144585	4.52794021990325	4.38739915035882	0.848267797848596	0.0752591440178842	0.361275291152819
Merged-chr11-107567623-2	chr11	107567123	107568123	+	876.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 2 of 31)	intron (NM_198298, intron 2 of 31)	19663.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	3.79517541700325	4.07935541655856	4.29101955816466	4.55765780651498	4.49307871880475	4.35913210632657	1.12416377504711	0.0208075035445486	0.165742940353704
Merged-chr13-58998058-2	chr13	58997558	58998558	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	URR1B|DNA|hAT-Charlie	190361.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	4.69347549608797	4.59614237392926	4.65061963379879	4.59310021429224	4.20688010458559	4.99735172546864	-0.0463088394305539	0.921704297722133	0.982542868764899
Merged-chr7-16222082-4	chr7	16221579	16222579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285931)	promoter-TSS (NM_001285931)	-47.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	5.89602867716264	6.02089847471621	6.49810431386262	6.37444114014483	6.50517532428023	6.6528646594853	0.596346779634134	0.0556221250479069	0.303469004064405
Merged-chr7-141393751-2	chr7	141393251	141394251	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	1591.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	7.04645879822118	7.57310583225201	7.01149810723793	6.98518331585767	7.15120972674331	7.10943668988748	-0.24285477808047	0.381088578169291	0.763002440200929
Merged-chr1-9892756-2	chr1	9892272	9893272	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	B4|SINE|B4	-15866.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	6.5594580749817	6.24156124267289	6.6474773824083	6.35438028390815	6.37997177103237	6.56093479845172	-0.0934902385780419	0.742233737085462	0.935165347690577
Merged-chr2-148532232-4	chr2	148531740	148532740	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88705.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.31093889404193	5.1165987702636	5.77792748516533	5.04270450716279	4.97048407875693	5.2981222924093	-0.639048117503354	0.106704819584354	0.435935318307798
Merged-chr12-32363706-2	chr12	32363206	32364206	+	725.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15083.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	2.17413364029909	2.29308138256627	2.41320122719749	2.35292480060177	2.18769244934249	2.54910077245282	0.471991440756741	0.585848728691802	1
Merged-chr1-171407434-2	chr1	171406936	171407936	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 11 of 12)	exon (NM_001005508, exon 11 of 12)	-3877.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	3.17422438520843	3.15512983182406	3.7217636829312	3.2003279273709	3.06268883556476	3.69857174844832	-0.100783471380272	0.886497433707121	0.973794308941933
Merged-chr16-33837483-3	chr16	33837003	33838003	+	959.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7838.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.37990831613824	5.6139218770449	5.58712480849179	5.13310249615803	5.26165573098598	5.59619463140836	-0.379194164294471	0.285075599714386	0.682645634310885
Merged-chr7-27553164-4	chr7	27552647	27553647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	71.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	6.50800810115331	6.31445924784474	6.47058959339783	6.78468570664414	6.50437721526116	6.47542204531428	0.267148587199529	0.330493032302601	0.721952410959523
Merged-chr9-35570229-4	chr9	35569728	35570728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029762)	promoter-TSS (NM_029762)	-159.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	5.42234254085866	5.78032475585818	5.9245177178069	5.68015820943691	5.48659310173013	5.77485929682005	-0.135614077892269	0.691837436260545	0.9184939224729
Merged-chr9-78489816-2	chr9	78489316	78490316	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8092.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.30240891897009	5.26964041330574	5.10241486838482	5.54216180561303	5.37781398626176	5.335310081322	0.37338271685135	0.280615221718593	0.678683623089196
Merged-chr12-35890884-4	chr12	35890370	35891370	+	913.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34751.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.29704288626666	2.89195518868104	3.11840751959502	2.87588126021151	2.9832560545642	3.40638360362881	-0.0400683203539303	0.955822339273874	0.989783387008628
Merged-chr5-142935794-4	chr5	142935281	142936281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33B|LTR|ERVL	-24574.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	4.39379571924725	4.36560675686364	4.48855561339085	4.61063621847331	4.31107357392019	4.42813189234461	0.101522306750141	0.817582607599004	0.956767881392089
Merged-chr13-105290897-3	chr13	105290437	105291437	+	726.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	2077.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.75342205616857	3.65803209225065	3.41307325342041	3.44646585367999	3.49025344901576	3.48559847121456	-0.53486388869196	0.357843187458656	0.744373220152849
Merged-chr9-50591913-2	chr9	50591413	50592413	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11936.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	5.1547226978156	5.30831200319532	5.70525025743065	5.36695672734669	4.99177686466688	5.42991842313809	-0.261325629145089	0.500163210765056	0.834939922586795
Merged-chr7-80207422-4	chr7	80206902	80207902	+	989.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	8961.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.79294652868046	5.37854263054762	5.3895230874354	5.39634865878682	5.52592531912069	5.07249870092145	-0.350747838386554	0.346938156181773	0.735116631005168
Merged-chr11-97656509-2	chr11	97656009	97657009	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6903.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	2.68704222052607	2.84290845013548	2.9848014549826	2.88378246599907	2.83680262413933	2.94036874470011	0.230031768556483	0.746187247122234	0.936287949695029
Merged-chr8-85071238-1	chr8	85070738	85071738	+	558.0	f1_balb.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-519.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	5.26402329514687	5.35233187515763	5.30617285435341	5.31917024884839	5.24403942875413	5.13868736906872	-0.13706517400007	0.691274053827834	0.918256515929559
Merged-chr17-74430673-4	chr17	74430170	74431170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MLT1J|LTR|ERVL-MaLR	28438.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	6.87845992869667	7.05889402315948	6.85412548176448	6.58527038419552	6.82931963127656	6.35714775791276	-0.494343562504445	0.0741359947306579	0.358166861147801
Merged-chr3-104639044-3	chr3	104638555	104639555	+	971.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	CpG	391.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	5.81217163543692	5.69102921294764	5.17450502914835	5.03510101271104	4.68686367205797	4.4692213782432	-1.72727244879705	6.60402942438407e-05	0.00199169293346919
Merged-chr7-55847823-4	chr7	55847318	55848318	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	5747.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.11077557295449	5.02238241399353	5.43083606568482	5.29145930062712	5.44169980634502	5.72518740179147	0.600273721784839	0.103255085372943	0.428352196127392
Merged-chr4-58288969-4	chr4	58288449	58289449	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037128, intron 1 of 14)	intron (NM_001037128, intron 1 of 14)	2987.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	2.57855498868175	2.69588177192376	2.6280767184884	2.40861638158287	2.37289316396399	2.37735431486757	-1.58466652689633	0.0552563529509911	1
Merged-chr10-77619300-2	chr10	77618800	77619800	+	647.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125904)	TTS (NR_125904)	-3021.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	6.51325404210348	6.69383553687418	6.87119690310987	6.72990059484028	6.98679443225434	6.6026667839691	0.15581613830696	0.572974200564386	0.869934493236159
Merged-chr2-12085682-4	chr2	12085186	12086186	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-215560.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.38817045057035	4.54770938497877	4.35369062608143	4.44532721879977	4.33877935194094	4.46508162495902	-0.0636841817811247	0.884141005439396	0.973466734537782
Merged-chr15-100762113-4	chr15	100761606	100762606	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021530, intron 1 of 24)	CpG	359.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	4.49833348852403	4.18759541953156	4.27282978996276	4.53942911236	4.59432296880201	4.56083078323897	0.598725924640022	0.175667795747782	0.555698392534067
Merged-chr2-60113880-4	chr2	60113372	60114372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	L1MA5A|LINE|L1	11868.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.84205709292103	5.73812805013678	5.60626266326034	5.68841919152219	5.82847735870548	5.69657024088778	0.00978637402634131	0.975041675722756	0.994418938322767
Merged-chr6-86524972-2	chr6	86524472	86525472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	1217.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	7.51909575477131	7.85906235304984	7.80802185942682	7.705502590458	7.8357091308109	7.82361396464681	0.0771992876644977	0.738365965238258	0.934032187674406
Merged-chr1-177711197-4	chr1	177710702	177711702	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-18612.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.10727235954274	3.58373617937556	4.15728711165966	4.25036292034774	3.98714547159352	4.31135002481845	0.616298963396733	0.259672924855334	0.657223042078191
Merged-chr10-80161888-6	chr10	80161415	80162415	+	905.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-5924.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	6.24245741866229	6.0263694823863	6.32991056410733	6.04190462291779	6.20682914890535	6.46076022366183	0.0689468559529111	0.817795528684719	0.956835450074313
Merged-chr3-107782205-2	chr3	107781705	107782705	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21736.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	4.30848551926886	3.93416481314344	4.05434305633785	3.75864104499584	4.04420096918253	3.81884975562355	-0.661657455129448	0.210716973125607	0.602996798150961
Merged-chr5-148496176-4	chr5	148495662	148496662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55511.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.74313505865788	7.13237063860229	6.68551657702586	6.65625843617038	6.9321450796498	6.35283247547553	-0.301950640239034	0.319591236622261	0.713540438213725
Merged-chr13-5855912-2	chr13	5855412	5856412	+	853.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045891, exon 3 of 3)	non-coding (NR_045891, exon 3 of 3)	2180.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.99953498388775	2.97082441138812	2.94721948235825	2.90318564924819	2.60176616984177	2.89924819878372	-0.853065205453976	0.244909080752138	0.642344989479084
Merged-chr10-14055574-4	chr10	14055088	14056088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	89209.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.6088220836201	7.80750093990638	7.50425085614253	7.48865513225684	7.62484946623729	7.35641577553188	-0.218934197959025	0.35638126694256	0.743237008563263
Merged-chr17-47842468-4	chr17	47841957	47842957	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7766.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	3.58145273522013	3.64107994239395	3.70702282349458	3.7072041616282	3.60046186289029	3.61961358256752	0.00513315854648851	0.992489831007416	0.998523796268552
Merged-chr7-102011409-2	chr7	102010909	102011909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 19 of 24)	intron (NM_133947, intron 19 of 24)	6746.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.88669752591621	4.07458699939267	4.27281907017668	3.95555633809653	4.21707126344428	4.25415269669849	0.195914291220402	0.694532229625568	0.919210273513843
Merged-chr1-156617420-3	chr1	156616917	156617917	+	649.155579	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	(GGAA)n|Simple_repeat|Simple_repeat	56922.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.65200865813521	4.64135844787691	4.0232441240468	4.44693140589959	4.26421753001085	4.25291329119685	-0.400008751789927	0.420507006474793	0.789742624867499
Merged-chr11-59534907-4	chr11	59534423	59535423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6646.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	5.08753149785893	5.05578115933662	5.38671249109978	4.96758469363204	5.17755552565364	5.24233530801066	-0.0861740856765418	0.816725514624784	0.956754861188725
Merged-chr8-111093676-2	chr8	111093176	111094176	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1069.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	4.54035396241272	4.53804913311196	4.64257976180029	4.43198926595802	4.28561361340578	4.85177570801609	-0.0989470936667559	0.826540409908497	0.959136713258354
Merged-chr1-58364091-3	chr1	58363533	58364533	+	787.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008419, intron 34 of 35)	intron (NM_001008419, intron 34 of 35)	-29103.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	4.03373638121114	3.99105178309148	3.95477840025904	4.95936405012805	5.08355923343915	4.8516952102329	2.52161475825919	4.39919942788256e-08	3.45328854712502e-06
Merged-chr15-41639885-4	chr15	41639379	41640379	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149116.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.09155411946569	3.47049439251446	3.49754759263635	3.13693114549405	3.32325211028186	3.29856362236292	-0.424736305243755	0.511780807503549	0.841552852273731
Merged-chr15-11400340-1	chr15	11399840	11400840	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-682.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	4.83998135639229	4.88731499036479	4.98799569554155	4.96907298905509	4.36502072550229	4.5515028184761	-0.573203081596327	0.189576090074907	0.575492422581279
Merged-chr12-99647087-4	chr12	99646581	99647581	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-19107.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	4.5885747798289	4.38695986698958	5.10741891627553	5.9876721945723	6.29963771207507	6.19609679566356	2.93174185053702	1.16278781641843e-13	2.63632830050531e-11
Merged-chr9-64734341-2	chr9	64733841	64734841	+	595.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	3415.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.74988539618349	5.63441342631634	5.21068119790493	5.00726236525536	5.25036107579531	5.13485553615324	-0.834598627688311	0.024471326994498	0.184355833097165
Merged-chr19-32651244-4	chr19	32650731	32651731	+	960.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011864, intron 8 of 12)	intron (NM_011864, intron 8 of 12)	31226.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	5.01729456631823	5.0550282650982	5.00099960646465	5.30916550820403	5.71031047191752	5.17548007125022	0.825198313912452	0.0279678537939959	0.199789592933621
Merged-chr10-25408994-2	chr10	25408494	25409494	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	626.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.43221893827894	3.56350164105632	3.5692256556463	3.40016097322158	3.74139669714831	3.88624917039186	0.578648337679176	0.321941837646528	0.715361348756705
Merged-chr13-46735975-4	chr13	46735466	46736466	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8117.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	7.92878055043214	8.3438963261056	7.94558908836628	7.76240082719641	8.19025999506453	7.81439592455957	-0.210145429572699	0.414548992171539	0.785861805729108
Merged-chr6-26404061-3	chr6	26403573	26404573	+	798.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	472647.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	3.08674453335447	3.32556669327022	3.3376465850983	3.02712096185665	2.89281691072151	3.30097332030867	-0.764498969962615	0.261173314737869	0.658753455222977
Merged-chr2-153168339-4	chr2	153167835	153168835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7034.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	7.09969985528394	6.78239654755212	7.04034070760424	7.41096173951428	7.35625799422702	7.00298205871858	0.448155987137871	0.0879489571087151	0.393486225567371
Merged-chr4-12140873-4	chr4	12140379	12141379	+	757.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028226, intron 1 of 2)	CpG	762.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	4.4138492667417	4.58469491328033	4.26591587433308	4.77240897072531	4.66346564816079	3.89277410854857	0.178582653704262	0.744939553549036	0.936032341688524
Merged-chr8-11099726-2	chr8	11099226	11100226	+	707.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91296.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.11908411826457	4.91136229501025	4.58647236832835	4.24685800031615	4.18942774326079	4.07020459381356	-1.81520116661204	9.55488480634894e-05	0.00272929232738305
Merged-chr14-67933269-4	chr14	67932751	67933751	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	CpG	321.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	5.60187782756045	5.64023954756203	5.78509921233639	5.62835393608691	5.17660024104689	5.34891343961728	-0.528843318624556	0.12646450164555	0.475355519288444
Merged-chr14-45667369-4	chr14	45666877	45667877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9234.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.79916891105803	7.95870950912759	7.47428928326012	7.74986922518223	8.37510270007908	7.54195317047218	0.265965861545804	0.379456665475429	0.761896589033286
Merged-chr11-106663494-1	chr11	106662994	106663994	+	589.0	f0_balb.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50564.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.3341945263637	5.51692730588253	6.09788688486624	5.47054831138126	5.42436230477395	5.64824356100161	-0.311084217829733	0.409969718168146	0.78304118380362
Merged-chr9-85327356-4	chr9	85326857	85327857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-207.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	8.36088852555994	8.69426559964898	8.17653317035539	8.35619914981857	8.68292216081607	8.35925186489258	0.0631251679630425	0.798303791809384	0.951930937621884
Merged-chr12-52398087-4	chr12	52397584	52398584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82525.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	5.20297696673513	5.24886803119703	5.4137130682741	5.32360134856469	5.35664859794598	5.61253037257362	0.284272295543494	0.411987879840181	0.784193340882693
Merged-chr14-34490117-4	chr14	34489621	34490621	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	12425.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	4.6566516302802	5.20728225228097	4.59195136348462	4.88839563337308	4.92385120728128	4.94164477256446	0.118367860671575	0.783541918538406	0.947244667253787
Merged-chr3-61412736-4	chr3	61412310	61413310	+	709.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48303.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.35784710771774	6.37115630850476	6.15051590694895	6.78295465068013	7.04971335543107	6.44421630669083	0.785556528260761	0.00801792091627212	0.086218036133519
Merged-chr11-29707034-4	chr11	29706530	29707530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-11533.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.2689935749346	6.39178119624106	6.42646288251204	6.32532276493682	6.67626128726272	6.59022375895454	0.293987841109527	0.289408258654104	0.68706902867673
Merged-chr13-34345105-6	chr13	34344589	34345589	+	858.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033167)	promoter-TSS (NM_001033167)	93.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.70071984763057	5.18742535930675	5.46948280104039	5.20270368846211	4.75403215575177	4.90187796468742	-1.03277516951213	0.00931609242012776	0.0957831975897678
Merged-chr8-25201665-4	chr8	25201175	25202175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177089)	promoter-TSS (NM_177089)	-133.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	7.03279895002828	6.77500301767051	6.97872618008682	6.82227534771747	6.36015063215639	6.87310793885412	-0.368035898955128	0.196190777706596	0.583940557712492
Merged-chr10-21827628-4	chr10	21827130	21828130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54554.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.68620015309841	6.68343569893251	6.89886361666106	6.70167394166311	6.89492752694402	6.54997890879682	-0.0310233664201856	0.907424100652874	0.978930955103388
Merged-chr8-22656603-2	chr8	22656103	22657103	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3166.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	2.76965457789998	2.51608379284218	2.64222926188151	2.65151998665876	2.175755834975	2.38580387192846	-1.36250037974792	0.150320332536816	1
Merged-chr17-27960587-3	chr17	27960055	27961055	+	825.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	51249.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.30838384929329	6.35943051997128	6.60017296331262	6.03121109034154	6.15361778338593	6.37002842017812	-0.391089554248057	0.176306305333534	0.556486421902461
Merged-chr1-52331575-4	chr1	52331062	52332062	+	838.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98330.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	3.3032036502903	3.57487531827603	3.76849362200794	3.02004057180742	2.91036295982606	3.16085882829116	-2.3301607284377	0.000894042630685698	0.0165204306493661
Merged-chr2-35437962-1	chr2	35437462	35438462	+	657.666687	f0_balb.idr	intron (NM_010283, intron 1 of 8)	MIRb|SINE|MIR	23487.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.10352131734446	2.93178191746736	3.0255784287674	2.93220309096857	2.62719015649764	3.26465312206935	-0.25737952872734	0.735419558776026	0.932744628746236
Merged-chr11-103346860-4	chr11	103346364	103347364	+	981.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045346, exon 3 of 4)	non-coding (NR_045346, exon 3 of 4)	2111.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	4.22852121856185	4.0373538672809	4.10258778161471	4.40146028646287	4.45082818599934	4.35837137108194	0.757840255374006	0.097589667808144	0.416614903236368
Merged-chr11-87019032-2	chr11	87018532	87019532	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25270.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.09111565711591	5.91897389543129	5.84229713006817	5.92735562458108	6.15030690143961	5.74489043028241	0.00874753154764131	0.977737323455596	0.99491955840204
Merged-chr2-60928478-2	chr2	60927978	60928978	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	34726.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	2.80449513838253	2.84844671888406	2.90262200621853	2.81559412131637	2.65132311949551	2.97481262388152	-0.188124483326939	0.794504144063238	0.950744971081973
Merged-chr11-45852668-4	chr11	45852150	45853150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	686.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	8.03744807003037	8.25418227570601	8.06180962445017	8.37349327826941	8.22367203885606	8.29020209036181	0.241982149127801	0.254951822828347	0.652024436103169
Merged-chr18-62092757-4	chr18	62092273	62093273	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87208.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.98145790189691	5.54544508665002	5.76135018078491	5.93193706204799	5.46577127797683	5.66448895336344	-0.140823607018595	0.684581386591166	0.915930759709583
Merged-chr11-21369405-2	chr11	21368905	21369905	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	1224.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	4.50509423086216	4.46020637585967	4.35876480852489	4.2796507755152	3.94592634761383	4.24638545886766	-0.781249316720745	0.0950771346609401	0.411119795295303
Merged-chr1-156532213-4	chr1	156531715	156532715	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ETnERV-int|LTR|ERVK	-26572.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.44622228646745	5.41317528028495	5.30246890416874	5.9518889598978	6.32363897057417	5.78825097565552	1.20002380185448	0.000367531411259734	0.00821863844883094
Merged-chr11-101171460-4	chr11	101170913	101171913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-41.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	6.63091393442747	6.69955544749576	6.41089624822827	6.76039168334865	6.807959802676	6.50894216718746	0.178274969545075	0.510112532652492	0.84070066529374
Merged-chr9-94691947-4	chr9	94691444	94692444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22052.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	7.36215816975828	7.33834547510395	7.47453890636197	7.24229263716083	7.49562156399908	7.41916458511068	0.00423161624834776	0.985515265370426	0.996904015210561
Merged-chr10-37222030-4	chr10	37221534	37222534	+	915.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83108.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.15512595214433	4.15525835381181	4.375127029045	3.97877949033605	4.26675621744825	3.93180388053062	-0.410923322458137	0.40921708779295	0.782609453389411
Merged-chr13-42074614-4	chr13	42074156	42075156	+	769.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	22635.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	4.3240879920571	4.21984610441098	4.36909441568614	4.37832417921291	4.49395337662309	4.10703780733849	0.121295657293397	0.793881326235673	0.950531747588938
Merged-chr13-112112654-2	chr13	112112154	112113154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175797.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	2.59390155223803	2.54978746281183	2.68119402029205	2.39462929560975	2.30730405821124	2.87037883015163	-0.351710692864497	0.680608095352115	1
Merged-chr12-85517752-2	chr12	85517252	85518252	+	836.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43862.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.22499392363412	3.08646558672654	3.18666188267328	2.98931573218726	2.97137498999576	3.20169153432628	-0.50929003108836	0.438473575521695	0.800590478188563
Merged-chr9-36797356-4	chr9	36796859	36797859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199494)	promoter-TSS (NM_001199494)	34.0	NM_001199494	13663.0	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	5.16496081504721	5.20456248058485	5.03270624168374	4.78575626573039	4.69797554051404	5.19544512682025	-0.526621465205477	0.182563509218584	0.565398543501872
Merged-chr10-57799667-4	chr10	57799170	57800170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	5126.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	4.37387318272983	4.40614567111892	4.47186251760093	4.68164001718546	4.53027036116288	4.36195684585541	0.305519339280531	0.481234487917767	0.824973407859029
Merged-chr2-174076271-4	chr2	174075805	174076805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172675)	promoter-TSS (NM_172675)	-746.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	6.52856108384949	7.07969911500767	6.99168917951834	6.8410334328613	7.10032977172583	6.92709398957299	0.117734471767132	0.677795621291009	0.913180344177175
Merged-chr18-34380780-4	chr18	34380278	34381278	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7363.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	5.37859939981877	4.94326362664102	5.25386568452378	4.84035570776787	4.71286879230236	4.95370442943946	-0.800760131261139	0.0414522583803275	0.254494172161904
Merged-chr3-121546147-4	chr3	121545663	121546663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13819.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	3.93320198237628	3.92534873677326	4.15266882881312	4.10521112253136	3.852867663451	3.66566881053638	-0.334202705951897	0.529581573104513	0.850995993412262
Merged-chr17-16951475-4	chr17	16950984	16951984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112619.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	4.6780845628833	4.73913769665099	5.35676900536033	5.13792142403425	4.84809920232374	5.21830865162771	0.261052565636397	0.546736239354509	0.85898091530532
Merged-chr10-10476734-4	chr10	10476244	10477244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.72631423170552	5.58379227674804	5.56163947358778	5.76773446696516	6.06313722293732	5.8649750977592	0.508936378075148	0.106675916471926	0.435916169724877
Merged-chr14-70776126-3	chr14	70775617	70776617	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 3 of 4)	intron (NM_010071, intron 3 of 4)	1736.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	5.59099323344031	5.74313693226419	6.07306585665319	5.79181875760811	5.62088945961205	6.07153989998755	0.041048772064962	0.903926081197134	0.977927198341699
Merged-chr3-97761346-4	chr3	97760843	97761843	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	6671.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.69907088464813	4.72664474589421	4.67675439247539	4.3697671978163	4.40499534684265	4.74219592468914	-0.47982191052198	0.259649927451463	0.657223042078191
Merged-chr18-84294309-4	chr18	84293780	84294780	+	755.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	206122.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	6.57179582446967	7.09277540525019	6.42016568330562	7.15846831861931	7.39140757639657	6.52098139202819	0.528974902133689	0.126781971414181	0.475814093971008
Merged-chr13-41249785-4	chr13	41249324	41250324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135577)	promoter-TSS (NM_001135577)	-20.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	6.95719492521062	6.80942256020106	6.73939177897951	6.78968382370661	6.7472521090211	6.56206262878998	-0.208106301708005	0.41848642795035	0.788591657834186
Merged-chr1-36922270-4	chr1	36921784	36922784	+	965.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	17243.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.87451951945466	7.03907039302852	6.4445023976963	6.81624126156973	6.87325825634456	6.84688114605165	0.0351020236560322	0.900209463378366	0.976731893119283
Merged-chr2-167691106-2	chr2	167690606	167691606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015500)	promoter-TSS (NR_015500)	-71.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.2952319093727	8.73381540122279	8.49571508374149	8.38971348897231	8.72885173800536	8.54587606629577	0.058291553186711	0.803880839875408	0.953557286986578
Merged-chr11-69802552-2	chr11	69802052	69803052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291104)	promoter-TSS (NM_001291104)	-836.0	NM_010198	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	2.88415866901746	2.8642752840674	2.91878133802331	2.95869069252971	2.75446276683196	2.74191676780567	-0.327481869765645	0.645366345704198	0.900539222399975
Merged-chr1-43916233-3	chr1	43915738	43916738	+	627.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-17756.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	6.34304537776904	6.01436696664067	6.2692716056683	6.33975492856388	6.19077224280873	6.09729543247748	0.00439922004595112	0.988006218946396	0.997268471577753
Merged-chr14-54757236-4	chr14	54756732	54757732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	24654.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	7.22393183433354	7.58185279121671	7.78768857608202	7.82744629258471	8.21426435217177	7.9907180533368	0.685066577425386	0.0088257651088587	0.0923059288779675
Merged-chr5-88770531-4	chr5	88770106	88771106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	MTC|LTR|ERVL-MaLR	5593.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	7.44430559811442	7.52299335648555	7.38977833143852	7.63383368874626	7.97434596661237	7.62045742840653	0.443083474289045	0.0630060986762323	0.326601760444302
Merged-chr5-66076943-4	chr5	66076526	66077526	+	818.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	21153.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.65856545136522	5.54001448084584	5.63646552719564	5.74129174738337	6.13064138377869	5.7263923998221	0.511548166090079	0.117365546500317	0.457455143020347
Merged-chr10-80678825-4	chr10	80678378	80679378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	7.66162879237133	7.58929140470922	7.64895352925161	7.79080653745275	7.96278598345662	7.64023959659735	0.258225801588329	0.253567744053557	0.650938353352309
Merged-chr14-69707542-4	chr14	69707043	69708043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301652)	promoter-TSS (NM_001301652)	41.0	NM_001146012	71843.0	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	3.96665495932809	3.84621843594281	4.07068112756662	3.60360607367529	3.96245658621929	3.85291760656428	-0.432860249118503	0.417900970836397	0.788425433317899
Merged-chr1-194985999-4	chr1	194985501	194986501	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9042.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.38202133674798	4.43765137495507	4.62150922796437	4.3378560303569	4.05552938479503	4.22749828002823	-0.719490558644543	0.117431802727714	0.457559976947523
Merged-chr11-32642440-4	chr11	32641947	32642947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271349)	promoter-TSS (NM_001271349)	-108.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	8.16629418247544	8.43072446037363	8.14052299166215	8.18042814801248	8.10081431142843	8.14183244143957	-0.163110344190501	0.451691618767304	0.809233899859178
Merged-chr3-105903444-2	chr3	105902944	105903944	+	780.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009631)	promoter-TSS (NM_009631)	-977.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	4.45073518540926	4.09561074068137	4.46086280499489	4.3869042762347	4.04453192050289	4.52693651013157	-0.0452164805643747	0.926340679668467	0.983439764163303
Merged-chr11-106752332-4	chr11	106751833	106752833	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033435, intron 2 of 6)	intron (NM_001033435, intron 2 of 6)	1107.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	7.44469956498593	7.50244790001637	7.30974290153163	7.29524012000417	7.65281849993547	7.17298005438788	-0.0343864021342723	0.892957733514478	0.975146620821922
Merged-chr7-81828205-2	chr7	81827705	81828705	+	705.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146193, intron 1 of 7)	intron (NM_146193, intron 1 of 7)	1226.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	6.52780173530308	6.80115809128777	6.36655081697088	6.64087996478328	6.83723558705557	6.57712026391049	0.171949102563891	0.540381599592435	0.85632302227606
Merged-chr8-104121586-2	chr8	104121086	104122086	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	RCHARR1|DNA|hAT-Charlie	-15713.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	2.90745884219979	3.24487873933281	3.16272648925709	3.15262552619005	3.14738921687398	3.29048309446038	0.350016082506075	0.597345719792656	0.88036091123097
Merged-chr11-115696322-2	chr11	115695822	115696822	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	3212.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.93540117765194	6.9407508119042	7.00199614804807	7.2058756346677	7.55950249231139	6.85606917748862	0.444812063552181	0.113249559636887	0.449519122180324
Merged-chr3-57847294-9	chr3	57846763	57847763	+	958.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019410, intron 1 of 2)	CpG	494.0	NM_019410	18645.0	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	3.47650733092082	3.13643307394824	3.6717887153091	3.33854693559002	3.16060154185798	3.26851784918389	-0.723533932015432	0.264200761603871	0.66211830463138
Merged-chr4-3645631-2	chr4	3645131	3646131	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10875.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.99065596364597	3.50851653459525	3.38412130983639	3.94951509766096	3.48439957273846	3.69332213884452	0.203161105127204	0.747792172525495	0.936758217658061
Merged-chr5-65972743-2	chr5	65972243	65973243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	intron (NM_001081104, intron 4 of 4)	5619.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	5.71356853286825	5.43247006477979	5.4248322676392	5.55841281132709	5.56407319522887	5.26203788763125	-0.109663434767543	0.750864962453908	0.937671231046582
Merged-chr10-127628357-2	chr10	127627858	127628858	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7210.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.9938713288516	3.78438393313735	3.96273250964197	3.82310641073859	3.69936543400253	3.88599799476373	-0.366750467432371	0.480670763908232	0.824703650190242
Merged-chr2-75704629-4	chr2	75704141	75705141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	22.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	8.67406683962136	8.88949819659425	8.38828321680513	8.34409101500111	8.58998447576395	8.25594519904915	-0.364250528334792	0.128717195847015	0.479799601167289
Merged-chr15-8463029-4	chr15	8462532	8463532	+	903.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18569.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	3.63143359715723	3.64370984801335	3.65810150022154	3.61164592656817	4.07688802666045	3.67498061362922	0.568437962439579	0.314681663866359	0.709056322762999
Merged-chr11-79254725-4	chr11	79254217	79255217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019653)	promoter-TSS (NM_019653)	-22.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	8.23679541276273	8.00200638625065	7.83415931380551	7.73828842576417	8.08767382710912	7.90648232361957	-0.168305487229873	0.485394261361501	0.827450486557697
Merged-chr17-64602899-4	chr17	64602400	64603400	+	898.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1251.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	6.1417340761514	6.47105920571769	5.85946066034442	6.2330810163954	5.92786733314279	5.92185689707866	-0.26727926204018	0.414488941218669	0.785828006486374
Merged-chr10-18056102-3	chr10	18055597	18056597	+	891.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111065, exon 1 of 19)	exon (NM_001111065, exon 1 of 19)	157.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	6.29892361156931	6.05733682858678	6.04895692412955	6.21040325802733	5.61340070088983	5.99553778590849	-0.320818394238547	0.329555672879176	0.721399184090983
Merged-chr5-34242549-7	chr5	34242050	34243050	+	970.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	45774.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	5.97849884338269	6.15656591976035	5.35040309494095	4.9542539804595	4.82841311674389	4.8472408193578	-1.98806853722536	4.32089297891095e-07	2.58842953915927e-05
Merged-chr5-123833216-2	chr5	123832719	123833719	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32297.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.19316428274677	4.1838679720627	4.03422606567722	4.77891239683737	4.81637365835899	4.40795684108678	1.39397417393384	0.00251907438987538	0.0369482005698485
Merged-chr13-107784181-3	chr13	107783686	107784686	+	775.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	96789.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.71072148871461	3.86668099528607	3.60348172358431	3.47877361351635	3.58038383312423	3.62005682187762	-0.612461859016697	0.273048163407332	0.670306314508203
Merged-chr1-131473981-4	chr1	131473482	131474482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	53379.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.74471332205748	5.35619421055147	5.89360282665016	5.77973184245038	5.78315747404115	5.95436177674777	0.295262272960951	0.379943225815783	0.762204638031028
Merged-chr16-78376882-4	chr16	78376387	78377387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009770)	promoter-TSS (NM_009770)	-77.0	NM_009770	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	6.8077704642517	6.41588649057424	5.95368611677703	6.27035292077317	6.19099977656111	5.82733127562118	-0.550068344074804	0.116708331393717	0.456175631276233
Merged-chr13-47217470-4	chr13	47216959	47217959	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	23456.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.74404954168205	5.75723458890131	5.81945338400799	5.06907889809166	4.99354656389078	5.377130252252	-1.22775831836947	0.00034531903439834	0.00781858672495702
Merged-chr1-61771437-1	chr1	61770937	61771937	+	730.0	f1_c57bl6.idr	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	132613.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	2.40639686303875	2.30435496538201	2.51551408608398	2.29788937187875	2.35128621930725	2.40102180755392	-0.376680965817364	0.647727477406922	1
Merged-chr3-83843621-5	chr3	83843073	83844073	+	876.4916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1965.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	6.89347795440351	6.79580229026554	6.85679947417514	6.74625367058628	6.86949239170894	6.66635917723545	-0.121526445548604	0.62762309463054	0.893330206932885
Merged-chr4-88867580-4	chr4	88867099	88868099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12602.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	4.38154822526331	4.45334373576484	4.10605312930525	4.7172069472633	4.27627228339986	4.12538581012422	0.188561427025728	0.704366354698563	0.922392522355862
Merged-chr16-18089224-4	chr16	18088730	18089730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011172)	promoter-TSS (NM_011172)	-40.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	4.64800815901431	4.64218130378732	5.0444166129708	4.6422064886012	4.65976865553331	4.60457790143428	-0.331238109557113	0.429795067239056	0.795863007201232
Merged-chr3-35751031-4	chr3	35750549	35751549	+	789.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3014.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	2.69228156087028	2.58773348298612	2.62558620801167	2.66727031279527	2.56905096184332	2.76060440072968	0.151006732986272	0.840632347058375	1
Merged-chr2-4503651-2	chr2	4503151	4504151	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-56103.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.70108708135726	4.75874049183928	4.47385646892053	5.33331252550203	5.46138404611062	5.28249088240925	1.50432235573422	0.000109165177431753	0.00305530308904853
Merged-chr19-5693316-2	chr19	5692830	5693830	+	962.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	4199.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	4.47973243572244	4.74079545960853	4.7231220712453	4.60445767137399	4.85726883574823	5.03463527535622	0.433020280676004	0.301299227426381	0.69799282019306
Merged-chr1-136673526-4	chr1	136673042	136674042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9854.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	6.52948194470732	6.64060800342026	6.44232519880725	6.8249007582754	7.05572877105559	6.79266734366258	0.561489872802965	0.0320782735957433	0.217447575507504
Merged-chr11-108425685-3	chr11	108425199	108426199	+	794.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 1 of 27)	CpG	433.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	4.52858562305723	4.14574502134883	4.40522129806532	4.52080251992681	4.37060460350121	4.24562094601667	0.0487928105117825	0.916100847007784	0.981243490008544
Merged-chr11-79520123-4	chr11	79519628	79520628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	3634.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	7.32210406110697	7.52356015381238	6.72735286809823	7.29968422189877	7.70500163961366	7.49764219280351	0.395506499792569	0.188548620709243	0.574174851118969
Merged-chr14-120325224-3	chr14	120324730	120325730	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_207515, exon 2 of 8)	5' UTR (NM_207515, exon 2 of 8)	18778.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.12705437848851	6.96299925967488	6.27270404157854	7.07528435794818	7.19786537554513	6.58344428676647	0.209857795297549	0.536820269337751	0.854215768737235
Merged-chr1-171103576-2	chr1	171103082	171104082	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-18079.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	3.38282695451176	3.02158716124102	3.24403409207309	2.94498941830836	3.1220254130209	3.36932983205862	-0.30177586165563	0.657880464416146	0.904859102731141
Merged-chr1-23867560-4	chr1	23867055	23868055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290683, intron 4 of 9)	MTD|LTR|ERVL-MaLR	42181.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	4.76343603569962	4.95053245040525	4.73235153511385	4.74409771087528	4.83445765993154	5.29982993806254	0.324347895354619	0.436599574974426	0.799551248563286
Merged-chr11-59537640-2	chr11	59537140	59538140	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3929.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	4.64871840029562	4.8056825941322	4.96219687972383	5.03835297884081	4.87567036168772	5.02656982716497	0.386646589161956	0.320940908889045	0.714664039040857
Merged-chr9-85573991-3	chr9	85573489	85574489	+	699.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175345.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.23047758268491	4.47986322457226	4.2689774599675	3.99805483900314	4.15966515528151	4.24665912158674	-0.545048865910606	0.248167241838757	0.645317036748627
Merged-chr11-103315535-4	chr11	103315036	103316036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29166.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	5.05671067150558	4.58466164273523	4.49413105461496	4.44659263059042	4.46881136041397	4.37952780007044	-0.750268975784912	0.0976645172936986	0.416781499454503
Merged-chr17-34561417-4	chr17	34560922	34561922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2873.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	5.23425313542318	5.1987782678736	5.39061309970571	5.35708514801027	5.52757242369314	5.86198634851438	0.617718382842096	0.0810925371064192	0.376789581614414
Merged-chr7-80025203-4	chr7	80024719	80025719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145999, intron 1 of 4)	CpG	405.0	NM_001146000	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	7.1094916219702	7.1262111135238	7.46876280554785	7.22818594155126	7.41233349861243	7.20042480554002	0.0772498520173521	0.758367315842296	0.940121252394213
Merged-chr17-12314211-3	chr17	12313754	12314754	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	4406.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	4.57255422649072	4.46268569005728	4.37294530740768	5.06554667978102	5.13662890886054	4.90903256635966	1.30706538555065	0.00129493014513702	0.0220479941715901
Merged-chr1-155384093-4	chr1	155383585	155384585	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 2 of 14)	intron (NM_011273, intron 2 of 14)	33359.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	6.37296310783553	6.39833054225499	5.88622259505564	6.74172892555818	6.99302768860909	5.94985558258219	0.639942292955524	0.0873685892454539	0.391922236990443
Merged-chr1-152428473-4	chr1	152427955	152428955	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	28588.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	4.38974067016732	4.00828919734521	3.92056917298526	3.6843340707699	3.93127544763272	4.08878694652562	-0.649058782211989	0.227918241678005	0.622981752321771
Merged-chr4-16169047-4	chr4	16168553	16169553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4943.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	5.80616854387277	6.37038466102121	6.51170388076095	6.3328594389676	6.43677873243682	6.21740364876492	0.13007068621849	0.689156623747915	0.917317384643213
Merged-chr14-73446965-2	chr14	73446465	73447465	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-61676.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.29046823695889	3.90525990970996	4.04899536912394	4.07179656011244	3.52594286612175	4.02245215533382	-0.600511425823331	0.285411653537972	0.682919708629405
Merged-chr6-71452963-4	chr6	71452462	71453462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-12325.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.77649957107447	5.42654916900732	5.79938502466824	5.51792908276777	5.37394539498088	5.4616695521677	-0.420389386073008	0.213797885784058	0.606900020244801
Merged-chr11-4186720-4	chr11	4186216	4187216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134023)	promoter-TSS (NM_134023)	-117.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	8.00230777081682	8.17171235167348	7.56518383454375	7.76975955769396	7.95268612644303	7.21347207096907	-0.359920888163354	0.227265555133752	0.622377314098514
Merged-chr9-120127668-4	chr9	120127164	120128164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011029)	promoter-TSS (NM_011029)	-102.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	8.06578528934145	8.14070305904239	8.20978677185499	7.91571975253347	8.23850733019463	8.30247917578831	0.0341240113025977	0.879843920873636	0.972270883264542
Merged-chr19-61222689-2	chr19	61222189	61223189	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	5729.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	2.69692041205227	2.79328494009519	2.78598518504427	2.65972884332949	2.63265179934544	2.60867188741371	-0.684977453722075	0.357030688094338	1
Merged-chr3-37142037-4	chr3	37141538	37142538	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-16084.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	3.91909546362922	3.71137600992381	3.92699644034611	3.59333510656107	3.74835861653731	3.5836521248938	-0.669354747097099	0.22150951463406	0.616231436888183
Merged-chr8-11107418-3	chr8	11106907	11107907	+	959.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98977.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.10968853109788	3.86849581004318	3.93448955875911	3.64262525598483	3.60706834699387	3.75132223525689	-1.02107338312732	0.0549112356939651	0.301071039774871
Merged-chr7-78913140-3	chr7	78912615	78913615	+	961.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-309.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	6.39759806024398	6.68907461048241	6.15355275282585	6.21769592553398	6.04945973052799	6.12518521995877	-0.52005374739975	0.0837178371770838	0.382915226243997
Merged-chr17-26466392-2	chr17	26465892	26466892	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42080.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.02703925270571	4.89133683958407	4.93837601919508	4.64036021564718	4.62929311761641	5.34263557474146	-0.111264989779625	0.800200755276218	0.952428832140568
Merged-chr5-125292723-3	chr5	125292175	125293175	+	749.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48419.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.78150416655169	6.02774538791301	6.23629675141924	5.89027452725437	5.86947097497455	6.21915514752778	-0.0461590362779906	0.885249430329435	0.973549591486895
Merged-chr19-16015354-4	chr19	16014835	16015835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30260.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	5.57544321264108	5.78705757359569	5.97385693761303	6.20722611894901	6.05987797399106	6.22427794336833	0.667859497709643	0.0293342903067811	0.205909197557503
Merged-chr10-127380587-4	chr10	127380084	127381084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359244)	promoter-TSS (NM_001359244)	-84.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	7.44148661743135	6.88253681774403	7.08221098721467	7.4664156891646	7.18450574345065	7.11401679871546	0.158281546673677	0.569824356818739	0.868897023832802
Merged-chr17-35168960-4	chr17	35168459	35169459	+	820.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4082.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	5.01717059934836	4.84854819123658	5.20444369017448	5.14985848885864	5.2447999946319	5.3872869966359	0.496561699182076	0.178682651492709	0.560022415863315
Merged-chr8-83739706-2	chr8	83739205	83740205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B1_Mur1|SINE|Alu	1606.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.34544029352334	8.27208532956851	7.6694761942499	8.47393640704311	8.84699529799842	8.24430670825667	0.577307337398737	0.0432635698802724	0.261182262395538
Merged-chr1-133685966-4	chr1	133685465	133686465	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159649, intron 2 of 5)	intron (NM_001159649, intron 2 of 5)	4051.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	3.66597107843977	3.72793165821887	3.47795635749284	3.34694156034334	2.97496440567451	3.25835396649858	-1.75745388503028	0.00758758878863014	0.0828649544460344
Merged-chr1-30873427-1	chr1	30872927	30873927	+	1000.0	f0_c57.idr	Intergenic	CpG	-10171.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	8.82055305016515	8.59740268235582	8.52387941846457	8.76699137393072	7.99564915008287	8.52642870944053	-0.257648439241998	0.33904163696219	0.729022315123909
Merged-chr6-54595185-4	chr6	54594667	54595667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164361)	promoter-TSS (NM_001164361)	56.0	NM_001164361	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	4.83725143919011	4.84478313143549	4.88000693820569	4.39291354645732	4.34396329825518	4.23468629825252	-1.28090901355252	0.00258025978001608	0.0375806504070677
Merged-chr11-117968503-5	chr11	117968077	117969077	+	896.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007707, intron 1 of 1)	CpG	789.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	6.57164778201359	6.12421658665767	6.12579505050897	6.12465778765042	5.94085099202585	6.36716669419478	-0.255568074831225	0.421569330716523	0.790435370459696
Merged-chr7-31109497-3	chr7	31109015	31110015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008281, intron 2 of 12)	intron (NM_008281, intron 2 of 12)	1482.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.80208150776586	4.68724052724455	4.43994952471151	5.23388482023681	5.04108577090997	4.93484852394413	0.921551824826462	0.0239970745996219	0.182148504937414
Merged-chr9-40415249-4	chr9	40414736	40415736	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-38819.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.08264230569644	5.36323360188079	5.48745006940483	5.74238936524737	5.92798380630231	5.39882713329457	0.769564976881812	0.0327493891139006	0.220366680802201
Merged-chr7-99387788-2	chr7	99387288	99388288	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 2 of 17)	intron (NM_201352, intron 2 of 17)	6270.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	2.9101614338886	2.49831628098163	3.01964512452857	2.71476803050779	2.5952820704933	2.86235719274151	-0.510223992497637	0.521691230268628	0.847184447163137
Merged-chr2-119972394-4	chr2	119971911	119972911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011941)	promoter-TSS (NM_011941)	-288.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	5.18456074576617	5.08831851542283	5.18548613300616	4.86260385110664	4.87803388063461	5.11991321596901	-0.431485823572434	0.243856757605406	0.640958811221234
Merged-chr10-8883910-4	chr10	8883405	8884405	+	973.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2165.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.69199974065618	7.67711384118886	7.45034710194631	7.50665309157066	7.60495136937073	7.2185571353435	-0.223633505255783	0.359243292808548	0.745440547165336
Merged-chr18-67389376-4	chr18	67388887	67389887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1344.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	5.76723015708156	5.41590649988303	5.2980778611408	5.4565868636856	5.19429563797137	5.45571013982441	-0.292217946197598	0.417013476743821	0.787768914407335
Merged-chr17-73948294-4	chr17	73947794	73948794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1902.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.68007045214725	7.5878011349972	7.28296309395647	7.63601668957428	7.95793764852088	7.59007343626219	0.304438458752167	0.228153825936069	0.623147576440797
Merged-chr7-34912834-4	chr7	34912341	34913341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	434.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	7.35668279602932	7.77582137524043	7.42291569567353	7.51904037689897	7.47482231122474	6.9316433657735	-0.280768151127847	0.320404780358762	0.714253897125111
Merged-chr9-107747540-4	chr9	107747033	107748033	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	23469.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	5.25004971388821	4.99400970528724	5.57588387051372	5.11837983926429	4.85186684748263	5.48293076147252	-0.244786864059869	0.553960528681833	0.862575362378324
Merged-chr5-34372723-4	chr5	34372224	34373224	+	844.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2791.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	3.63837206343451	3.57525365201297	3.49293559004933	3.76778470720204	3.91057706689785	3.98060302606567	1.04104625153241	0.0560687757841034	0.304927032177447
Merged-chr14-66231788-3	chr14	66231302	66232302	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17978.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.8587772265301	6.46335822621168	6.49506115519795	6.71932851593416	6.86845446224427	6.81861384442755	0.282848168016617	0.301192994220502	0.697863295363654
Merged-chr12-33304115-3	chr12	33303703	33304703	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	B1_Mur1|SINE|Alu	1688.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.75938240073322	4.45793352408221	4.09795863418258	4.34790443760595	4.46648261487367	4.32030124071826	-0.238374523864346	0.622336023137959	0.891095398768986
Merged-chr4-129016418-3	chr4	129015903	129016903	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23179.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	2.15524141976685	2.24741427477318	2.32500152310951	2.06015477535004	2.11647604683661	2.07021063056701	-1.17805370807965	0.196100287243902	1
Merged-chr9-123851976-6	chr9	123851488	123852488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148925)	promoter-TSS (NM_148925)	-89.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	8.22926471007511	8.35844650753897	8.11789346396401	8.31960396078152	8.66048775204454	8.10210204545808	0.20685022449732	0.395836160328941	0.773144649859171
Merged-chr1-132370939-4	chr1	132370457	132371457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3009.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	6.14001455711883	6.35720332324335	6.43544353467656	6.30408258190813	6.16523998584681	6.3864700424087	-0.0499691239712873	0.860233286551511	0.967441103100897
Merged-chr6-123259946-3	chr6	123259442	123260442	+	875.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2165.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	5.26898612137195	5.02570031082358	4.62565948711971	4.43925233532145	4.59561222561396	4.73556410432386	-0.953922561382558	0.0281999736405962	0.200867181594846
Merged-chr14-27352629-1	chr14	27352129	27353129	+	541.0	f0_balb.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-8760.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.82905234868395	4.98754155521255	5.00452659935388	4.88556182583717	4.73589855692664	5.00025922681301	-0.157770620438974	0.683132182987145	0.91523316791368
Merged-chr13-47277460-3	chr13	47276961	47277961	+	805.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.16105581203417	4.14050434837626	3.75068323260268	3.57430273296241	3.70983019180172	3.71211676281144	-1.18718658814592	0.0304387650056086	0.210851545003886
Merged-chr4-132573540-4	chr4	132573062	132574062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	9495.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	8.04010806417957	7.80592955381155	7.44609825035977	7.81603101869543	7.9127203560346	6.99307867280971	-0.209756702639963	0.516470957065883	0.844290327414415
Merged-chr11-58096311-4	chr11	58095782	58096782	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-7688.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	4.89357376090267	4.5980447979907	4.45749849823303	4.08843100715497	4.01728432781911	3.87219002585672	-1.79819622216309	0.000255329195338941	0.00611449845986219
Merged-chr3-129877966-3	chr3	129877507	129878507	+	823.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-599.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	3.59919271846539	3.98897025265677	3.50778262228955	3.73892670915279	3.30952093968758	3.40221623116534	-0.778608340444154	0.212630386506554	0.605171266998975
Merged-chr9-57651019-4	chr9	57650478	57651478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2653.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	7.65714207731239	7.73238506847398	7.73319847187753	7.75886148014012	8.18818731922949	7.79830590013207	0.330841860696416	0.16701331564383	0.542621064645689
Merged-chr6-114649326-2	chr6	114648826	114649826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	6229.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	6.69426731783994	6.70858615176784	6.76651158815223	6.89274960001408	6.69730461797775	6.79471732497616	0.115059823068552	0.646986808121045	0.901147217868585
Merged-chr12-98249893-4	chr12	98249411	98250411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	9548.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	4.34511135592626	4.60252980376776	4.18905809700466	4.29057778576113	4.26093171698266	4.2100140319355	-0.381270381193421	0.412476458217209	0.784515731598663
Merged-chr8-120619799-7	chr8	120619310	120620310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	14572.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	8.88233570798055	9.00921043078954	8.49218228441603	8.38901324992822	8.78793805786865	8.21863837173519	-0.444156606244374	0.0898120984463935	0.398318277586379
Merged-chr19-4142837-2	chr19	4142337	4143337	+	842.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_206973, exon 2 of 2)	exon (NM_206973, exon 2 of 2)	3038.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	2.33939047973371	2.3622398816909	2.44645081939503	2.17481371440278	2.13568537483905	2.33001861039295	-1.20236265728001	0.168501708336131	1
Merged-chr3-41039038-4	chr3	41038536	41039536	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44010.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	5.39403955115779	5.20031704003682	5.08482290679035	5.64616668470958	5.76981641688972	5.48470509696401	0.78082595073336	0.02405537726911	0.18236150071138
Merged-chr16-35747961-2	chr16	35747461	35748461	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	21395.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	4.13519415022636	4.20651754247169	4.33220642165025	4.22383425982563	4.35136916259866	4.31231923881054	0.209896770430001	0.645165072513791	0.90045202461189
Merged-chr19-14692355-4	chr19	14691853	14692853	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94170.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	2.69353149394294	2.76440105807348	2.78297398035936	2.55980388277929	2.68002469186326	2.67107371797106	-0.587894116265766	0.4307516827517	1
Merged-chr11-82571622-4	chr11	82571126	82572126	+	909.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61727.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	6.33976584931601	6.07183508467388	6.35470105683526	6.70299434038996	6.5698728931141	6.41460341188902	0.514846014122191	0.0666610364230708	0.337371906738694
Merged-chr17-25115142-2	chr17	25114643	25115643	+	902.845215	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163661, exon 2 of 21)	exon (NM_001163661, exon 2 of 21)	762.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	5.87040894240699	5.95981076869654	5.89272807510252	5.68316698488798	5.83343496893029	5.55329308418313	-0.363219767468579	0.242291792980734	0.639370021259067
Merged-chr13-66907118-3	chr13	66906611	66907611	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177750, intron 1 of 2)	intron (NM_001177750, intron 1 of 2)	1696.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	3.41260789755681	3.65929301632751	3.82816819516739	4.55634095065946	4.87827526975519	4.39972183139825	3.05396993092979	6.22515678646339e-08	4.67493543220258e-06
Merged-chr6-17749747-3	chr6	17749263	17750263	+	850.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	593.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.46820008445741	4.38069945984923	4.3282852664933	4.76133228839024	4.72769825180927	4.4890613908076	0.675735497619607	0.114583672651157	0.452032914562748
Merged-chr17-86166834-6	chr17	86166331	86167331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-954.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	8.04664879820705	8.55353804876844	7.93132142953194	7.92516818733459	7.97599188692812	7.5712670631495	-0.525427242499642	0.0533859999685763	0.296216154918513
Merged-chr6-95118687-2	chr6	95118174	95119174	+	783.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001008785, exon 2 of 4)	exon (NM_001008785, exon 2 of 4)	794.0	NM_001102670	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	4.18835224237917	4.08546835854625	3.96340745208419	4.12693996705655	3.93086912994349	4.0825516173125	-0.125452270912722	0.797771280498429	0.951807414581074
Merged-chr15-59685588-3	chr15	59685073	59686073	+	866.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36919.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.72515896337306	4.52126449992962	5.00005018388455	4.47848517628631	4.49454916546548	4.86472492237766	-0.327237044535576	0.457890249302589	0.812646784915319
Merged-chr1-131679836-4	chr1	131679332	131680332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8863.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	5.39892026184386	5.31432573271119	4.97418042964403	4.92987221674311	4.82733868250326	4.76189772592478	-0.869367100233281	0.0239622256902245	0.181986936403085
Merged-chr9-74990152-4	chr9	74989593	74990593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	13982.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.94352842798564	5.16846817510671	5.35276303937691	5.47349608474356	5.03419601795355	5.49987430106584	0.374971198616169	0.33059349763812	0.721995374054402
Merged-chr15-3256884-2	chr15	3256384	3257384	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13883.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.38021810250825	3.41168755152384	3.26888550649218	3.37204494424094	2.98677099756193	3.28327937651187	-0.560759411381078	0.387202448497066	0.767462350491678
Merged-chr16-20371914-4	chr16	20371396	20372396	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 17 of 29)	intron (NM_013790, intron 17 of 29)	-46492.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	6.68232577017433	7.07527964844299	6.27205342052367	6.34477333090553	6.22895128772878	5.80923042893119	-0.925258531161761	0.00719652376252522	0.079765886524955
Merged-chr15-3270126-4	chr15	3269624	3270624	+	885.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-643.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	6.01109785682169	6.07743746979534	6.6433549691704	6.09054782427737	6.16594560237102	6.18026621053529	-0.197377945655199	0.539567520693494	0.855999814331336
Merged-chr8-120489494-4	chr8	120488961	120489961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	CpG-14576	595.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.65404847050445	6.83740254437985	6.70509941711606	6.84971346224773	6.8788039564303	6.63125887445988	0.0971575350354265	0.706234784230979	0.92293797688573
Merged-chr9-44882205-3	chr9	44881718	44882718	+	915.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-944.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	3.72171820825328	4.24892723967423	4.52630595645025	4.14830949629814	4.17414189460311	4.03731695791788	-0.218697226237506	0.689124133029069	0.91730348521969
Merged-chr2-72285865-5	chr2	72285447	72286447	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	CpG	246.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	7.91951616791578	7.74666433106538	7.60242193259095	7.72052452511589	7.46968284710591	7.15067780134732	-0.422527629698641	0.104691178712189	0.431779112678256
Merged-chr9-108338180-3	chr9	108337665	108338665	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329528)	promoter-TSS (NM_001329528)	-915.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	5.6697704864223	5.58666284960833	6.09014568312768	5.72374435097389	5.87046610373018	6.16982241192675	0.246781096158019	0.468678574965372	0.818694631884688
Merged-chr5-90655555-4	chr5	90655064	90656064	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15037.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.94856771001513	4.61173192835789	4.6486606488623	4.31749049856196	4.48102976430625	4.71428382376235	-0.592698609236281	0.176525874010771	0.5569048312678
Merged-chr6-16897164-3	chr6	16896667	16897667	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	1274.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	6.60400337677868	7.03136162124108	6.46288506663485	6.78993265826023	6.8188368055527	6.59637907071271	0.0147345339450345	0.959537041745093	0.990233913483689
Merged-chr19-16109001-2	chr19	16108495	16109495	+	577.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-23836.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.76162137752934	3.73126627427011	4.31474605955985	4.31680773760796	4.29991667435334	4.57626445892699	1.25844988804937	0.0172091332600579	0.146086363073103
Merged-chr8-75083995-4	chr8	75083500	75084500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9618.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.31926847034782	6.83067814461477	7.16618945404502	7.05469184639197	6.78834515067506	6.77137812637261	-0.367831449660349	0.180735357226176	0.562780765065326
Merged-chr3-39175080-1	chr3	39174580	39175580	+	606.25	f0_c57.idr	Intergenic	Intergenic	288140.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	3.41809767861989	3.52284788135249	3.72675600845813	4.39970326812515	4.74777688665211	4.59456242615593	3.34088618770693	5.78221048774909e-09	5.53654971535819e-07
Merged-chr1-23419160-3	chr1	23418645	23419645	+	820.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35970.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	2.68439800994381	2.67446844538662	2.87002597063059	2.6317948074269	2.59456005591358	2.88417153046372	-0.20349665592555	0.786222293630762	0.948394331310521
Merged-chr14-73450296-3	chr14	73449776	73450776	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59773.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	4.51311773121387	5.33583295553312	4.82749376539377	4.59438819097466	4.33879627983711	4.74117912967377	-0.880507858924844	0.0635949522673114	0.328650940206102
Merged-chr16-50364507-4	chr16	50363982	50364982	+	823.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	67907.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.77553781478942	4.93044763236737	4.95818395404363	4.680900622453	4.88609701730649	4.4108256242318	-0.450601279366666	0.288245380191533	0.685618935308933
Merged-chr6-72599900-2	chr6	72599400	72600400	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 1 of 10)	B1_Mur3|SINE|Alu	1272.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	3.83243393787555	3.90865609346042	4.26634755182727	4.04296560671439	3.8180079655218	4.0257791173268	-0.133973507812939	0.797144704421379	0.951678829711438
Merged-chr5-8675683-6	chr5	8675150	8676150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 6 of 29)	Tigger7|DNA|TcMar-Tigger	-52698.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	5.73950881505858	6.15941810287219	5.69367842506022	5.51697667080551	5.45944248177819	5.26401626655665	-0.860304752131847	0.0129301504279675	0.120480622263194
Merged-chr6-86521510-2	chr6	86521010	86522010	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4679.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	2.73820004958573	2.69295011695826	2.8547839335007	2.5188859311511	2.69201222619573	2.74835667351155	-0.565257526541359	0.453565323543315	1
Merged-chr10-21945032-4	chr10	21944556	21945556	+	956.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	PB1D9|SINE|Alu	-33616.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.84673991504724	5.67091599370334	6.00146936659138	5.75291724433421	5.60260336383763	6.16405460169026	0.0154308327481833	0.963641048502258	0.991121100730027
Merged-chr4-43218162-4	chr4	43217654	43218654	+	932.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 11 of 39)	intron (NM_001081413, intron 11 of 39)	-49005.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	4.64311474006411	4.77759113697207	4.80839787134384	4.7420873945827	4.61255888753292	4.59918098316599	-0.208479727161016	0.605740522764462	0.883587073228711
Merged-chr9-38820343-4	chr9	38819885	38820885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4977.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	4.10813687678921	3.71593120405782	3.59992757070632	3.62245982440102	3.75689228920958	3.93384460056736	-0.193183956362833	0.734575217597364	0.932542028344951
Merged-chr5-99233746-1	chr5	99233246	99234246	+	549.0	f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	intron (NM_181318, intron 6 of 13)	19181.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.97873760716875	5.96517994866973	6.03745212414753	6.10441056748156	6.22556107569204	6.05315601837659	0.248818712553313	0.384776163879289	0.765926259647846
Merged-chr8-11558237-4	chr8	11557724	11558724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-186.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	6.70894746664042	6.82856013604651	6.79726985197856	6.86943674150474	6.85989556835582	6.96919910151086	0.183566423517214	0.455669950354019	0.811093409198074
Merged-chr2-103762377-2	chr2	103761877	103762877	+	718.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111290)	TTS (NM_001111290)	-1107.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	3.4775497220736	3.41960244086494	3.49593881435802	3.82205445859318	3.61424241949024	3.62261652328484	0.807634308708968	0.151706668788084	0.519302636848728
Merged-chr11-83536596-4	chr11	83536092	83537092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6074.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	5.28496483581528	5.10998043091465	4.88282791746258	5.13374725502292	5.02560584734401	4.98760701882315	-0.129967141141301	0.730518157307541	0.930886577604787
Merged-chr7-80837187-2	chr7	80836706	80837706	+	735.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24902.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	7.27295453835843	7.3077707818201	7.41164412186039	7.23924299247996	7.50446842318929	7.00988559417526	-0.0739861239286489	0.772006739537849	0.943680976839558
Merged-chr19-38053640-2	chr19	38053183	38054183	+	676.775024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1301.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	3.77210168674051	3.73649312924961	3.98318508014185	4.21911892238011	4.22249669331182	4.19265197542228	1.1579921099627	0.0192514773604057	0.157463573007435
Merged-chr10-22307504-2	chr10	22307004	22308004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	784.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	7.57566215676527	7.34200572633104	7.08193086257099	6.2455807698037	6.00519729454682	6.0309842454655	-1.98174373001502	1.95412200844969e-12	3.55018742530746e-10
Merged-chr10-26797502-4	chr10	26796993	26797993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	24981.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	7.59273399257973	7.46008306916622	7.37566782222698	7.13254346544158	7.37030724895512	7.08342661955934	-0.40326693507279	0.0959276199263173	0.412930439670409
Merged-chr6-129747567-1	chr6	129747067	129748067	+	661.0	f0_balb.idr	Intergenic	Intergenic	-7083.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	3.24472636279764	2.97426477923651	3.25555036366568	2.94642797141337	2.77501476955786	2.78978461330454	-1.55986324344912	0.0310864183478611	0.213471634535112
Merged-chr6-34872590-2	chr6	34872090	34873090	+	774.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_197986, exon 2 of 2)	exon (NM_197986, exon 2 of 2)	5475.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	5.12946735234014	5.37178018848243	5.4556763436068	4.98070688849282	4.82188999767229	4.74553971207959	-0.981009000692013	0.00986346224110785	0.0994931465823859
Merged-chr18-62228500-4	chr18	62227973	62228973	+	932.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48373.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.94179354842778	5.67741232564334	5.69581299477417	5.73721756426985	5.58816184091615	6.18618157102438	0.122754622522579	0.721618150484626	0.928555409719137
Merged-chr17-13905782-4	chr17	13905275	13906275	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010806)	TTS (NM_010806)	-42598.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	5.41311904413908	5.56108967295816	5.54622989511958	4.93820903292317	4.88617387814887	5.16252254997511	-1.05587361124158	0.00298987674687523	0.0420168323516287
Merged-chr7-80028524-2	chr7	80028024	80029024	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	2296.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.8351577925297	5.74410571339696	6.09792563765358	5.97246127394095	6.04982905875042	5.78480208483263	0.103805114736836	0.739161624447283	0.934160003144178
Merged-chr19-32309606-4	chr19	32309105	32310105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	MTD|LTR|ERVL-MaLR	39711.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.44723248065157	3.30864799989752	3.28894905860913	3.04028750558555	3.03717679179161	3.30437300389068	-0.958646156728366	0.137397157914227	0.495344138463043
Merged-chr11-79460941-2	chr11	79460440	79461440	+	718.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 30 of 57)	intron (NM_010897, intron 30 of 57)	23091.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	3.97044088936185	3.80403054100423	4.1418645977391	3.86844695995288	3.98829626615382	3.77347352447576	-0.260449981001864	0.61742268884351	0.888810836054056
Merged-chr2-158154197-4	chr2	158153690	158154690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7798.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.5345017858905	4.34279492016975	4.54022945492933	4.89929847228358	5.07674356728178	4.47407460633889	0.900509795781533	0.0413504076441738	0.25407507895853
Merged-chr8-3187017-2	chr8	3186517	3187517	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 9 of 21)	ID_B1|SINE|B4	92600.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	2.33092274605548	2.35791011711765	2.4729563048405	2.14814720461685	2.31044621754538	2.3575201258741	-0.742423382202937	0.387150268990159	1
Merged-chr5-99375164-2	chr5	99374664	99375664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122237.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.86711092178491	7.8684709137692	7.94250667734405	8.0819294716872	8.38511748622769	8.07248879263453	0.428952055606684	0.0538253821202917	0.29752889094966
Merged-chr17-81709600-2	chr17	81709100	81710100	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	L2b|LINE|L2	28787.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.35909871968527	3.00680044825433	3.16619533271706	3.02572167449489	3.0809044048596	3.29289033689141	-0.230795011435809	0.729569958872285	0.930635866770147
Merged-chr9-95859930-2	chr9	95859467	95860467	+	660.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019864, intron 1 of 46)	B2_Mm2|SINE|B2	-2085.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	2.45214016095054	2.51814736522914	2.67309273604098	2.59485654242574	2.7166738320791	2.42376788942944	0.239022458428509	0.76663559612948	1
Merged-chr15-78583518-3	chr15	78583003	78584003	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1914.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	3.42142409902631	3.40879766576717	3.7849243244412	3.44236654648751	3.10165705885599	3.09598633593867	-1.24764971158023	0.059547227643535	0.315854256248057
Merged-chr4-42950272-4	chr4	42949775	42950775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-121.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	8.09069475643054	8.00852254015156	7.69049819437698	8.05828774926187	7.85360587706859	8.03322648758223	0.0480915106152863	0.836765269682874	0.962001762335242
Merged-chr15-27921413-2	chr15	27920913	27921913	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	104435.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	2.58806344788249	2.54901223916561	2.51860912637984	2.62681370196904	2.60848815083902	2.71833857352688	0.547727394009411	0.471026041000608	1
Merged-chr5-148595534-4	chr5	148595051	148596051	+	951.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42763.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.62798448629478	4.65112271056843	4.75377817882104	4.95197309292941	4.95270840667806	5.19589078593811	0.800112404886091	0.0403031606219775	0.250046373399817
Merged-chr10-21671659-2	chr10	21671159	21672159	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-19186.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	2.38572240662872	2.53670376778299	2.63853658916937	2.75147483624348	2.39516432352143	2.83298645609332	0.830021233484233	0.312410203805329	1
Merged-chr2-45239034-4	chr2	45238512	45239512	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121570.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.50490654706533	7.58099289321638	7.48861360159711	7.46127533458626	7.66736601533477	7.7656266473688	0.157566202636726	0.491253582122184	0.830448151501811
Merged-chr18-5803130-4	chr18	5802628	5803628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210481.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.8502526143755	6.15855361085634	6.999757321413	6.6051291822675	6.58505808592974	7.16368899839427	0.144177385358699	0.678767407714797	0.913553442377278
Merged-chr18-4266207-4	chr18	4265693	4266693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86760.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.15243112221787	7.3872493126644	7.01543065228215	6.8356439162143	6.73073599093686	6.73271336345614	-0.663836509830942	0.0091083622260653	0.0943468945731908
Merged-chr3-105018535-2	chr3	105018035	105019035	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	RSINE1|SINE|B4	34418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.27382448648535	7.20881947637332	7.07684467052971	7.11203043834986	7.36737889606509	7.04086303804593	-0.00454794351021143	0.985379646733796	0.996904015210561
Merged-chr1-152530554-2	chr1	152530054	152531054	+	791.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	L2a|LINE|L2	94663.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.60425188700392	5.46306526418136	5.60189764140349	5.69295605088365	5.93524339898352	5.71851092364924	0.441566940949842	0.166044248689906	0.541111888340174
Merged-chr15-83166806-4	chr15	83166306	83167306	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	5402.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	2.92585390347293	2.8497178158955	2.99651906716144	2.86200209992646	3.03926325020943	3.0098395420235	0.246334140254281	0.718799365081578	0.927526114130251
Merged-chr16-20316978-4	chr16	20316463	20317463	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183158, intron 2 of 8)	intron (NM_183158, intron 2 of 8)	8441.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	3.02638617448842	2.94615662529125	3.09588726104188	2.94691416891857	2.86122682251332	3.11064123710753	-0.237222139459406	0.726415623824947	0.929825991245655
Merged-chr1-164081130-3	chr1	164080653	164081653	+	924.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011346)	TTS (NM_011346)	19077.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.62998242523395	3.86949766592129	3.77291592907531	4.44710443317064	4.68831110703343	4.3072957917573	2.13482858841366	3.49374152400734e-05	0.00117126206579212
Merged-chr13-113446331-4	chr13	113445859	113446859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045501)	TTS (NR_045501)	56485.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.56662324766242	6.27130494388288	6.44979636254755	6.16081865381283	6.26202786143231	6.2827366681792	-0.327312305360274	0.24132661303154	0.638385260200477
Merged-chr5-143466259-4	chr5	143465873	143466873	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1880.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.2234794598449	5.99686305350902	5.67260757650027	5.88890373602375	6.10643390353707	5.67793733232465	-0.139449969506664	0.678775214180521	0.913553442377278
Merged-chr9-18452333-2	chr9	18451833	18452833	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21226.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	2.75971032915095	2.62172172859344	2.81994452070392	2.54095549818051	2.83261410181386	2.83277145163265	0.0504033424454543	0.947061937259978	0.988008807662239
Merged-chr18-20643851-2	chr18	20643351	20644351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-21399.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	2.70796674984109	2.49634618083365	2.76609816849855	2.68217487482571	2.45735790080294	2.89747029399884	0.145657383777813	0.85459974412	0.965987623019113
Merged-chr13-12408873-4	chr13	12408360	12409360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 13 of 44)	intron (NM_144835, intron 13 of 44)	13485.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	7.14142476743451	7.20014750494756	6.89190447689671	7.08138795432685	7.28692887728562	6.9355113880618	0.0397925503798399	0.877302851613632	0.971560353131186
Merged-chr2-28699872-6	chr2	28699361	28700361	+	868.5347289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027283)	promoter-TSS (NM_027283)	-210.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	4.86318047538209	4.96317954895289	4.80500593284879	4.80723920922048	4.71526693613328	4.71297953426954	-0.31187487267742	0.423566460274574	0.792056049318534
Merged-chr18-39489367-5	chr18	39488887	39489887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2142.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	8.01701034995357	7.9316755943929	7.93559815196089	8.05941705023592	7.78959831201802	7.77092689310466	-0.115728099289156	0.602776030764547	0.882397657327329
Merged-chr7-66689765-4	chr7	66689272	66690272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003961)	promoter-TSS (NR_003961)	-117.0	NM_152815	72635.0	Mm.289796	NM_152815	ENSMUSG00000053091	Lins1	2700083B01Rik|AW547219|Lins|Lins2|Wins2	lines homolog 1	protein-coding	5.3970511515917	5.40832461706676	5.75242382273183	5.47325816359942	5.28948260542631	5.47386455365025	-0.210116881759752	0.542643036385504	0.857318248006765
Merged-chr8-108703407-2	chr8	108702907	108703907	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-11237.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.18266956262597	4.28365793898156	4.53087509224797	4.22480716370371	4.17794464319634	4.17212456420069	-0.377505345607096	0.417748486808548	0.788316235550544
Merged-chr6-3498388-4	chr6	3497910	3498910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024260)	promoter-TSS (NM_024260)	17.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	5.87820427998605	6.0683307094112	5.88930380493244	5.91814171845613	6.08495733970701	5.50168885434147	-0.134722057173962	0.684890012518957	0.916042498883771
Merged-chr17-50674756-4	chr17	50674263	50675263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	LTR48B|LTR|ERV1	-23918.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	5.3829300128172	5.59656095565401	5.49475307680979	5.88753349399442	5.84719983476301	5.92383556782125	0.711523168175522	0.0235433518753561	0.179844666305181
Merged-chr8-61517947-4	chr8	61517429	61518429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	30195.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	5.59117602606752	5.61061477998284	5.38501571460449	5.14845242034431	5.24254664379802	5.18842138642909	-0.6766527868625	0.047486285824741	0.276040161443695
Merged-chr18-38929289-7	chr18	38928620	38929620	+	946.5578	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-10421.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	5.73862412958861	5.39938722243559	4.89327527002011	5.25025268779071	4.83887541017732	4.44386186737794	-1.04138233998039	0.190298276038	0.576569892312198
Merged-chr15-78753174-1	chr15	78752674	78753674	+	606.0	f1_c57bl6.idr	Intergenic	Intergenic	20271.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.31129282479165	3.33754860519732	3.45053511354429	2.83405191791075	2.72181853805084	3.01930698137232	-2.58165327033811	0.000612605079476932	0.0123342222268285
Merged-chr2-26639160-2	chr2	26638660	26639660	+	791.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028571)	TTS (NR_028571)	161.0	NR_028571	100306954.0	Mm.491822	NR_028571	ENSMUSG00000077192	Snora17	ACA17	small nucleolar RNA, H/ACA box 17	snoRNA	3.32815626322692	3.11778894303841	3.72355122430304	3.38756027413568	3.3972935180884	3.49542855459037	0.0736539293773936	0.908430620725139	0.979259582109985
Merged-chr3-51475916-4	chr3	51475402	51476402	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053089)	TTS (NM_053089)	-8064.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	5.47873947846694	5.74210976631505	5.39375429340212	5.80724919272842	6.17784858261226	5.85622762220509	0.739956846667352	0.0272379949287259	0.196567136342535
Merged-chr11-43434677-2	chr11	43434177	43435177	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198936, intron 1 of 15)	B3A|SINE|B2	946.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	4.54595728794027	4.5137114145355	4.95743754700255	4.64517352634123	4.70492891564023	4.62108639645841	-0.0340219879955667	0.936487179966897	0.986037792257163
Merged-chr2-91933735-2	chr2	91933235	91934235	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 31 of 31)	intron (NM_001166597, intron 31 of 31)	-1438.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	2.5621148568543	2.59727466108012	2.79767510865083	2.8018695925675	2.60982751605262	2.87041066853688	0.588770601902174	0.435383291247535	0.799001636162842
Merged-chr11-85526381-2	chr11	85525881	85526881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	UCON26|Unknown|Unknown	173217.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	6.93982531230635	7.11949080980299	6.69721912371202	5.95956015110341	6.32866321976272	5.97100382390532	-1.32456893426878	1.01609832902533e-05	0.000406673928626935
Merged-chr16-57177442-2	chr16	57176942	57177942	+	627.549988	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-10110.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	4.00664483234521	3.81979537961803	3.6704643923527	3.59184791142644	3.59804865440694	4.17010865172807	-0.111877129834331	0.848234314256548	0.96433314940637
Merged-chr9-15307010-4	chr9	15306548	15307548	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199484)	promoter-TSS (NM_001199484)	-600.0	NM_001199484	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	5.83463261920271	6.10036938539373	5.90003188876346	6.09459959801209	6.06889086351781	5.47886006748027	-0.049155345873062	0.885329265791218	0.973576084147613
Merged-chr8-70634259-4	chr8	70633728	70634728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.60446689499579	6.22528973042094	5.63873839138436	6.62006208524485	6.58701800583476	6.18705322259395	0.415815697925381	0.256058350517594	0.653115451305932
Merged-chr2-151543043-3	chr2	151542561	151543561	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126058, intron 2 of 3)	CpG-8654	578.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	4.44137025215531	4.48161109065589	4.34815425581421	4.35874819976092	4.04298175922403	4.03004459582505	-0.737747091233016	0.116871021128458	0.456511310020503
Merged-chr17-81536357-4	chr17	81535869	81536869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	202018.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.91461138226162	6.16478097215564	5.84260907952569	6.14186184262996	6.2176083029633	6.05068485996107	0.262517461736365	0.379172735154967	0.761674249055766
Merged-chr10-8948459-3	chr10	8948017	8949017	+	774.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62447.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.60217928092364	2.74686955064513	2.46737914875466	2.79672496917589	2.80682424481926	2.8056828131567	1.00430683334541	0.200501778076251	1
Merged-chr5-114661677-1	chr5	114661177	114662177	+	630.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	-3256.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	5.8885168276145	5.71420516625411	5.90180114472298	5.88632453249084	5.57489342096947	5.93959949948379	-0.0623581488776449	0.845127957773735	0.963760118842549
Merged-chr2-132695813-4	chr2	132695178	132696178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	5080.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	7.23990428766583	7.52508709022907	6.9322361726415	7.28431296637938	7.53237240168795	7.40633937430862	0.218306237288482	0.415858539925729	0.786747452594524
Merged-chr15-86364049-4	chr15	86363506	86364506	+	965.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	86331.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.11698298155949	4.19571073334012	4.14685065027517	4.19375144972279	3.98386763616417	4.07256607817351	-0.202774307403329	0.670412839300426	0.910029595108128
Merged-chr10-80097481-2	chr10	80096981	80097981	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	3706.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	3.01115430699039	3.17502343325417	3.13771257497611	3.3040950035095	3.1554238153342	3.37841746025398	0.709183509748421	0.268016737451211	0.665202988397994
Merged-chr19-9988258-19	chr19	9987749	9988749	+	911.7510990000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 9 of 11)	intron (NM_011913, intron 9 of 11)	5603.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	3.35669222898848	3.00540946875118	3.24089418033157	3.26856197228168	3.09464288686723	3.52626083757628	0.375768510958915	0.571743298048359	0.869623374840198
Merged-chr4-43547347-4	chr4	43546857	43547857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 19 of 56)	intron (NM_011602, intron 19 of 56)	15226.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	3.48326800837869	3.5998821488475	3.68873479727682	3.15755682797301	3.32085401963739	4.02656757201362	-0.117660038055109	0.862923718436669	0.968145160359081
Merged-chr3-41586642-1	chr3	41586142	41587142	+	542.0	f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	21762.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.24788741827674	4.32993250333846	4.48984916617739	4.59965816439421	4.09132928264107	4.47452829742771	0.117703867094484	0.804060696168728	0.953557286986578
Merged-chr5-115280469-2	chr5	115279969	115280969	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	ID_B1|SINE|B4	767.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	6.8175319403642	6.88826959537039	6.54603092677888	6.6095994298825	6.59084704429424	6.45758676253744	-0.330870257436832	0.214528105678921	0.607654364696749
Merged-chr15-84996449-2	chr15	84995949	84996949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8478.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.88734883102898	4.990072019767	5.2563842638475	5.04115223968488	4.9142135961875	5.03125040677487	-0.107534465944213	0.777303372624382	0.945082310229414
Merged-chr5-24048006-3	chr5	24047512	24048512	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17322.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.7224381077416	5.76017981846486	5.784759188895	5.07859267474125	5.34925978781979	5.47638309196621	-0.850204898159818	0.0116393862639056	0.111912416483367
Merged-chr5-147418569-4	chr5	147418077	147419077	+	902.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033625)	promoter-TSS (NR_033625)	-43.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	4.89829948418434	4.80593837055508	4.69195061427624	4.61453084333788	4.11444246979771	4.27308305876536	-1.12077774924479	0.0135673434470931	0.124097121418679
Merged-chr1-168432438-4	chr1	168431918	168432918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291509)	promoter-TSS (NM_001291509)	-249.0	NM_008783	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	6.36776077344354	6.27151455077182	6.0968336524524	6.3502820709158	6.45211295841671	6.22395313151365	0.156905239444236	0.577798019044524	0.87219514592351
Merged-chr7-78913901-4	chr7	78913374	78914374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113527)	promoter-TSS (NM_001113527)	109.0	NM_020583	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	6.94327096659826	7.31314136970248	6.7408301369808	6.90041147068909	6.75711320091578	6.45842712103141	-0.470429057569795	0.109667550316035	0.442584999839782
Merged-chr1-86479291-4	chr1	86478796	86479796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47261.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.40159689418858	5.53372214573474	5.57760449387171	5.26141600745093	5.10154088107271	5.29205679404538	-0.572843559220237	0.0938687293015702	0.408100173871417
Merged-chr18-67800056-4	chr18	67799568	67800568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045376)	promoter-TSS (NR_045376)	-39.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	5.89854112215504	6.0347943513092	6.02912828460718	6.28331245236609	6.27602453085263	5.73335961316359	0.254535878476727	0.424356408472763	0.792671673227999
Merged-chr9-13828095-3	chr9	13827605	13828605	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	389.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	8.01807409312084	8.52631061121175	8.14104791956582	7.93515722980599	7.96063899157983	8.19700810267412	-0.30792616300955	0.211719675207145	0.604079509468714
Merged-chr5-105154001-3	chr5	105153485	105154485	+	669.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-14399.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	3.19847698199517	3.29869338750839	3.24246325909351	3.63372880335185	3.55082611117837	3.48917353425215	1.21000581813047	0.0434397158939828	0.261876315798375
Merged-chr4-47302817-2	chr4	47302317	47303317	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-50405.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	5.29546353552748	5.29330970255319	5.32454043696603	5.03988456733573	5.08553255406484	5.13163440176005	-0.449397876366589	0.198550862559271	0.58685067390707
Merged-chr4-153974599-2	chr4	153974099	153975099	+	996.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177673)	promoter-TSS (NM_177673)	482.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	5.62985307195283	6.22692559278537	5.39523292730322	5.40616041772667	5.309468951774	5.74604938213014	-0.588085802169739	0.134321295291394	0.490030092011853
Merged-chr4-62265631-4	chr4	62265123	62266123	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20806.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.35472703631184	4.44106357399055	4.06279790167059	4.68570187311353	4.65423266463088	4.43170521355223	0.736858102052765	0.108828719030602	0.440760284891619
Merged-chr1-80661900-4	chr1	80661457	80662457	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	3395.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.79486734817987	6.95238642044178	6.72100692887623	6.9277217830055	7.03590233122236	6.85706484310503	0.178279613125199	0.477903341783394	0.823464515587694
Merged-chr7-19695895-2	chr7	19695395	19696395	+	583.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009696)	TTS (NM_009696)	2503.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	5.11580500753641	5.11154841874245	5.07460571132213	5.07147276902757	5.30723611390618	5.58457577790038	0.461988881140559	0.211592733449695	0.603945120913907
Merged-chr1-154258095-2	chr1	154257595	154258595	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_108050, intron 1 of 2)	MIR3|SINE|MIR	-1189.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	3.3188451841824	3.52225840107248	3.40286241630089	3.04332504539352	3.05770284728943	3.52545462070555	-0.793699271893996	0.232526753268568	0.628804775351458
Merged-chr10-79929442-2	chr10	79928942	79929942	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	2101.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	2.68857389100183	2.51053341171058	2.89673787015379	2.60005098140861	2.56350888784447	2.8541774774018	-0.155586355431459	0.841949051993477	0.963002495523594
Merged-chr4-74252691-4	chr4	74252165	74253165	+	993.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 1 of 20)	intron (NM_001356561, intron 1 of 20)	786.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	6.97061219829079	7.55825472662298	6.9069040008085	6.99269656269759	6.88019413492254	6.09168350672188	-0.70560842181446	0.0489880244739437	0.281213904134385
Merged-chr1-189658676-2	chr1	189658176	189659176	+	766.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	29410.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.68834975772687	4.86224890626743	4.74150195850831	4.42820702953851	4.42846426921215	4.73129300250634	-0.580104526757393	0.166805782801111	0.54240433228749
Merged-chr4-141148559-4	chr4	141148056	141149056	+	907.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	CpG	634.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	7.88898850213143	8.22553988129318	7.84426696233831	7.87703629345518	8.13490223613996	8.03244374317931	0.0251793767296707	0.915172606868014	0.980959026698783
Merged-chr17-27839280-1	chr17	27838780	27839780	+	623.0	f1_balb.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-807.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	6.66278674373068	7.00522405000365	6.4435316446486	6.77049017312892	7.2101924921894	6.50376838435366	0.218418907086255	0.497249081631989	0.833500500620649
Merged-chr2-79677839-1	chr2	79677339	79678339	+	915.0	f0_balb.idr	Intergenic	Intergenic	-29941.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	2.79546135757987	3.07412101545059	2.94379136229824	2.95752129830288	2.82903444506786	3.13220157847306	0.134624175017401	0.848666919214484	0.964356989789491
Merged-chr8-72475932-2	chr8	72475432	72476432	+	872.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	-699.0	NM_138585	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	5.86555664246091	6.36866361990815	6.49662444763141	6.28223557619655	6.68802110899055	6.71486737289904	0.504869726979301	0.118759235878892	0.460621754487057
Merged-chr2-180709470-3	chr2	180708970	180709970	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289651)	promoter-TSS (NM_001289651)	529.0	NM_177852	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	6.47378258007749	6.26429157037591	6.55996188100161	6.56447589645032	6.4436871766334	6.55145806700151	0.139398477713968	0.607346633589133	0.884581207370863
Merged-chr6-31208868-2	chr6	31208368	31209368	+	726.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	URR1B|DNA|hAT-Charlie	9606.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	7.73001903886188	7.75131922423213	7.17167898733927	7.4814976893298	7.87976071161032	6.89105169626681	-0.132921550393758	0.689312333682556	0.917319650405699
Merged-chr8-26123343-3	chr8	26122840	26123840	+	675.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357292, intron 2 of 6)	intron (NM_001357292, intron 2 of 6)	3530.0	NM_001357294	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	3.41837521039343	3.62466086186893	3.37277561388393	3.52587944210539	3.34240354712273	3.6611781389928	0.100245274396558	0.866559700167654	0.969097085258187
Merged-chr14-20674272-4	chr14	20673792	20674792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168273)	promoter-TSS (NM_001168273)	-29.0	NM_172596	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	8.36694646240272	8.72753832189908	8.32265839582146	8.35992469294864	8.72112205604154	8.51594238774187	0.0746555564812239	0.753191328887625	0.938549578325581
Merged-chr5-124425833-6	chr5	124425340	124426340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359978)	promoter-TSS (NM_001359978)	117.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	7.58931652850581	7.42989480359044	7.35898846316264	7.74535524737828	7.67510955674558	7.42679660301082	0.236425409957146	0.317599435382859	0.711433769406873
Merged-chr17-47737034-4	chr17	47736532	47737532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-5.0	NM_001161722	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.55446659905449	6.68099087052092	6.85082136247392	6.99276151570135	6.56923950149477	6.42894435284692	-0.00648071274636147	0.982290092557502	0.995992226862322
Merged-chr7-98322646-4	chr7	98322128	98323128	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	5.78154553599809	5.63841078442805	5.50709060902052	5.08433618292308	5.49800531310309	5.39010019001909	-0.593090718309485	0.0910458351272729	0.401574986117974
Merged-chr19-47242445-4	chr19	47241952	47242952	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163480, intron 3 of 5)	intron (NM_001163480, intron 3 of 5)	13609.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.24686865155647	3.39182210405282	3.31477973563466	3.73755450219694	3.80359109083993	4.00965581315487	1.9225224595365	0.00123668488857023	0.0212695486168151
Merged-chr12-3340425-2	chr12	3339925	3340925	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-24707.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.12015925746791	2.79759031545237	3.10338735080483	3.04078718088227	2.92046321267164	3.05967359348766	-0.0342884171803489	0.960505894044436	0.990386809359123
Merged-chr10-117944088-4	chr10	117943583	117944583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	MTC|LTR|ERVL-MaLR	18624.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	4.60414795469107	4.63870388323865	4.78699554413508	5.26698829605991	5.44156562379891	5.14580077076331	1.36200827689823	0.000329745451597016	0.00753776360892432
Merged-chr8-34744879-4	chr8	34744382	34745382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62728.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.04324455171417	3.82526901067485	4.14275025150533	5.78967194568084	5.82876625693323	5.18951883503865	4.10112248032577	4.8318318176692e-16	1.62772089831829e-13
Merged-chr7-101873246-3	chr7	101872734	101873734	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2446.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	4.4931558049661	4.2449403971703	4.52916308535108	4.36199977346121	4.25759571685063	4.70809016199605	0.0540636139010146	0.906796872617222	0.978838075044546
Merged-chr18-14681408-2	chr18	14680908	14681908	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	B3A|SINE|B2	1506.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	3.66633364717491	3.72642847558785	3.55465385556843	3.55239028831343	3.40402650263412	3.57103851990497	-0.534308865761723	0.344372019197091	0.733001815546698
Merged-chr11-43600094-4	chr11	43599576	43600576	+	899.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008375, intron 1 of 3)	intron (NM_008375, intron 1 of 3)	1486.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	3.25278027456108	3.20385661284805	3.32750829663886	3.65831091316757	3.59211574843694	3.56716966128264	1.34459721902411	0.0231154514461246	0.177762521620068
Merged-chr16-18249517-4	chr16	18249027	18250027	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	644.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	7.5712350206916	8.05808398762397	8.05304303105921	7.76932595750803	7.86824495652802	7.85684821400684	-0.114143025672941	0.642873968467456	0.899548231805501
Merged-chr4-117682155-3	chr4	117681625	117682625	+	910.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023178)	promoter-TSS (NM_023178)	100.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	4.73342929864284	4.95743034549064	4.82107172007083	4.80616763501716	4.92891501025567	5.1610721982935	0.271219842342199	0.490843656156257	0.830181469396006
Merged-chr15-58818777-6	chr15	58818316	58819316	+	896.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	4611.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.17639818359919	7.25332775879595	6.45113947101836	6.60513577805013	6.79871275383049	6.4308405313477	-0.605980620046003	0.058149245589178	0.311557142754947
Merged-chr5-112276521-4	chr5	112276039	112277039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326590)	promoter-TSS (NM_001326590)	-152.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	7.65888977458794	7.57749519284425	7.39047028316897	7.75012636970381	7.64542904339529	7.57249857586003	0.155075368320438	0.497386824817097	0.833616591523779
Merged-chr13-5425487-1	chr13	5424987	5425987	+	563.0	f0_balb.idr	Intergenic	Intergenic	432605.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.62666077222648	3.3241829325965	3.84192082642379	3.23692662854758	3.11459782698162	3.52444362492606	-1.18977414930473	0.0669025681510794	0.338115271369574
Merged-chr2-117327123-4	chr2	117326622	117327622	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	15755.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.95572807678743	4.10184520479095	4.21465690056532	4.20405559259303	4.0569719950565	4.00114954847114	0.00789461507016044	0.987052465653591	0.997161899445921
Merged-chr13-52580579-4	chr13	52580089	52581089	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.07793885426824	5.15186483751208	5.50267973702711	5.35675258420824	5.05730351459442	5.45579566577964	0.0901556558265505	0.811161335685736	0.955134885850785
Merged-chr19-46392300-4	chr19	46391782	46392782	+	689.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	B3|SINE|B2	3453.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	2.50453458773926	2.46718189855688	2.53225307110349	2.62302455374483	2.39347436044905	2.72992082718462	0.488430424113293	0.538930092860608	1
Merged-chr10-37336974-1	chr10	37336474	37337474	+	898.0	f0_balb.idr	Intergenic	Intergenic	-198048.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.35849188070099	7.58412137533251	7.49453788922438	7.21375410542461	7.37485023239332	7.31958050699862	-0.261205824299263	0.261654468029566	0.659457534066706
Merged-chr14-40963119-3	chr14	40962567	40963567	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	3829.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	2.68980420905008	2.93179443388261	2.99129736765623	2.74950200043617	2.78951107760246	3.06274475823423	-0.0260757272540313	0.971536537112815	0.99377981119604
Merged-chr1-60940782-4	chr1	60940287	60941287	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31762.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.73821334347402	5.75346094270157	5.78009755214315	5.69068259458054	5.96971893578102	5.96160138912623	0.224272864052527	0.466873334094385	0.81767199291361
Merged-chr8-22963267-4	chr8	22962768	22963768	+	852.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11568.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	3.69690227016879	4.07598195827822	3.68202722635063	3.73936542486678	4.2901165667554	3.91651321369312	0.520534906163573	0.364277144360922	0.749672848931133
Merged-chr1-105663857-4	chr1	105663373	105664373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	12.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	6.48590356549532	6.62353432497249	6.87199890966023	6.77430390302461	6.78248481214781	6.65875294926562	0.129820339777758	0.625849082683138	0.892699930948805
Merged-chr4-126815076-4	chr4	126814561	126815561	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	61291.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	5.37928945472886	5.38375819048589	5.88883534459216	5.46019037690146	5.49484623752374	5.50116665204762	-0.138944007262222	0.694302153710969	0.919210273513843
Merged-chr8-72006079-4	chr8	72005555	72006555	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	3571.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	3.20854900984833	3.09619423814659	3.30323734262328	3.36748197870933	3.40353285605879	3.58648723660545	1.00549294392031	0.10261501915241	0.427208784725015
Merged-chr6-137404422-3	chr6	137403909	137404909	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-6312.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	2.28379725656841	2.35426945874734	2.50494916190053	2.3325316364931	2.18436577242923	2.51709010421689	-0.221836067531012	0.794830014865625	1
Merged-chr14-55745052-3	chr14	55744550	55745550	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	634.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	6.29016382112462	6.17677945780076	6.52120687954715	6.46709057688594	6.87874286244462	6.69468373869073	0.593471542289197	0.0383392584765681	0.242426125421873
Merged-chr13-34238092-2	chr13	34237592	34238592	+	941.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	75128.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.51422065717251	4.74571361602841	4.45335035230565	4.85242173944487	4.86970986964271	4.88778344848891	0.655206287149231	0.10940932910451	0.441960722570073
Merged-chr19-44293974-4	chr19	44293477	44294477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009128, exon 1 of 6)	5' UTR (NM_009128, exon 1 of 6)	301.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	5.96611432508819	5.92697229328366	6.03438800079686	6.35216790889141	6.30078914441277	5.74273227092642	0.344033522131051	0.28418039509108	0.681902442968206
Merged-chr4-48039911-2	chr4	48039411	48040411	+	811.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	2.20131120402973	2.08949172842987	2.31586754265761	2.44143168170951	2.31229856384961	2.87746122917247	2.41258065348602	0.011228824677533	1
Merged-chr9-89198521-4	chr9	89198035	89199035	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-738.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	6.43417268200197	6.36013399427271	5.85101375752066	6.50910767109855	6.70951504542013	5.64274230274691	0.211171445957926	0.592458563776881	0.878046778323738
Merged-chr18-68220453-4	chr18	68219942	68220942	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	L1M4b|LINE|L1	-7504.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.75597087791521	5.82750909070904	5.45287795673128	5.53990844427623	5.42579439959809	5.63243489596654	-0.321025884470271	0.333238531972572	0.724160662532614
Merged-chr10-8790696-2	chr10	8790162	8791162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	95408.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.14491655938455	3.24576277291674	3.40384093568346	2.83519215631026	2.79003102102679	3.26459547871514	-1.32335836425561	0.0684307485216693	0.342207207343654
Merged-chr2-167648421-2	chr2	167647921	167648921	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	13123.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	4.25148790134599	3.7957770417959	3.74993684029501	4.12578084455544	3.59671846953648	3.52754374494372	-0.536552239310748	0.380508265981211	0.76259289454609
Merged-chr17-53485841-3	chr17	53485360	53486360	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 2 of 5)	MLTR11A|LTR|ERVK	6626.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	4.07596483347343	4.12186068315011	4.38060236257094	4.29995098973574	4.66518050454619	4.4476749282075	0.782456568686194	0.0931797867185952	0.40657919757719
Merged-chr3-14886491-8	chr3	14885979	14886979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009801, exon 1 of 7)	5' UTR (NM_009801, exon 1 of 7)	191.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	4.89003817380634	4.57603858333036	4.72285308342706	3.93169761660521	3.67981374524855	3.82826231562136	-2.68103308616111	2.06170934195992e-07	1.34934497370095e-05
Merged-chr9-106886220-4	chr9	106885682	106886682	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	818.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	4.39633927583262	3.9163696479273	3.91369744299211	4.43442273137787	3.89653134717773	4.32339780535015	0.365326479026877	0.501134174027994	0.835440646332086
Merged-chr15-78599914-2	chr15	78599425	78600425	+	617.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2878.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.35000037430394	5.36528318938606	5.55724282522936	5.43351712156666	5.2927827783587	5.53780506261088	-0.00696259498152503	0.983622601512315	0.996399860725864
Merged-chr7-47015899-4	chr7	47015409	47016409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-7495.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	6.65925896009501	6.34666960391549	6.53482767066756	6.54076178129758	6.58641988661859	6.3113273634858	-0.0412919021147039	0.882064324729239	0.973002238292341
Merged-chr2-52785258-4	chr2	52784764	52785764	+	794.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43115.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	2.58716532013934	2.35920539577543	2.24215457317064	2.49719848764383	2.40561695485244	2.58500268525074	0.532809100719129	0.535757007673538	1
Merged-chr17-71102679-4	chr17	71102181	71103181	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-80851.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.60095810723985	5.49331946623241	5.65061161982358	5.26487976732079	5.4010780578108	5.60742316257053	-0.2961327870318	0.376619184487592	0.759336465825071
Merged-chr15-78589071-4	chr15	78588578	78589578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7489.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	7.04679374819412	6.85079993114643	6.97425571139396	7.31289758988724	7.30001183025066	7.00465721848367	0.396184846906389	0.112185833127923	0.447436626208972
Merged-chr5-135960956-2	chr5	135960456	135961456	+	957.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160366, exon 11 of 11)	exon (NM_001160366, exon 11 of 11)	13520.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	2.92102525746137	3.18200675343195	3.23262628138687	3.07950880704953	3.39957537308838	3.19000124286351	0.500051133822069	0.456607174810303	0.811754760311421
Merged-chr11-78346749-2	chr11	78346249	78347249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	39.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	5.30603823181454	5.36805409933172	5.87153964009845	5.60045538730574	5.78272799218501	6.01847679493529	0.516176034296188	0.150665376729197	0.517564234271863
Merged-chr7-135652956-4	chr7	135652451	135653451	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-637.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	6.86019130291612	7.2769848061304	6.84263661330284	6.97394641616019	7.40655736672934	6.8706396991636	0.151385675230406	0.605624134308903	0.883581756351046
Merged-chr3-129724197-3	chr3	129723703	129724703	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010113, intron 6 of 23)	intron (NM_010113, intron 6 of 23)	883.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	4.0700252411698	3.70141797995167	4.1690416045925	3.84861014347322	3.62066866292448	3.65379878803824	-0.884246744147206	0.111041167599833	0.445106150575533
Merged-chr15-51732555-2	chr15	51732055	51733055	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132906.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.51199532408629	3.51245275601563	3.96047744303119	3.61289875815746	3.62965609381992	4.11303927333576	0.416658447977532	0.484793780425395	0.827104649927955
Merged-chr2-151741286-4	chr2	151740792	151741792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305244)	promoter-TSS (NM_001305244)	18.0	NM_212446	228769.0	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	4.77112162601409	4.67094294608895	4.64768891334167	4.37611431300306	4.46160389739015	4.41891094779063	-0.684414749819881	0.102929498290091	0.427792386539026
Merged-chr18-50030907-5	chr18	50030253	50031253	+	939.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-231.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.82776386947692	4.53670612680558	4.5795373773355	4.81207423869288	5.0491543866557	4.84892465075623	0.581525296690995	0.154387538502424	0.523666674943519
Merged-chr17-34027363-4	chr17	34026891	34027891	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008202)	TTS (NM_008202)	664.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	5.25866561450768	4.81094045134174	5.37648893072797	5.6255940223725	5.44669295294864	5.21873558139392	0.563711428453508	0.145199526743764	0.508278212537777
Merged-chr2-5845108-6	chr2	5844654	5845654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356501)	promoter-TSS (NM_001356501)	23.0	NM_001356502	98828.0	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding	7.38879612457306	7.62415658825759	7.28249156327631	7.17672542969818	7.37166620008406	7.25776779127477	-0.254238152042134	0.2957727667697	0.692654652514324
Merged-chr2-166710696-1	chr2	166710196	166711196	+	541.0	f1_balb.idr	intron (NM_177782, intron 1 of 39)	MIRb|SINE|MIR	3136.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.47118090809295	7.05111127785898	7.30330974842315	7.54799696903657	7.68846174309819	7.20517505750393	0.3213624053087	0.228469795484963	0.623643169724529
Merged-chr10-30797095-3	chr10	30796615	30797615	+	998.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	MTB_Mm|LTR|ERVL-MaLR	6211.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.41366912874041	3.39888489468539	3.36184347516972	3.24758012104373	3.18252662420765	3.37745478785153	-0.511183411609228	0.399319841606282	0.775775529529442
Merged-chr14-31383585-2	chr14	31383085	31384085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	34092.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.81023727740253	3.90234902679853	3.87018751910422	4.26556309605739	4.09087962381694	4.59104010422082	1.32403303946317	0.0094320233981586	0.0965675258624616
Merged-chr16-44139160-4	chr16	44138664	44139664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	95.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	9.18146706800051	9.06378716729071	8.64700137423528	8.79947736421333	9.2718553685213	8.60754820512099	-0.0777404296510333	0.773601371108192	0.944143607720533
Merged-chr5-104021927-4	chr5	104021437	104022437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053262)	promoter-TSS (NM_053262)	-141.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	7.59352777939562	7.84016855536723	7.69487375094412	7.5404614895094	7.64691193543873	7.36102072467693	-0.27020933968178	0.247977605353345	0.645106161833394
Merged-chr7-142386296-2	chr7	142385800	142386800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1570.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.73409694968438	5.81369000637587	5.8337875297837	6.60477324411419	6.40884384588621	5.8434505032796	0.926737219587749	0.00513890314262164	0.0623330339180936
Merged-chr17-14943154-4	chr17	14942645	14943645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083880)	promoter-TSS (NM_001083880)	-21.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	6.60970213006247	6.54885445210892	6.44692543945483	6.53583623916163	6.42149067889177	6.6766532827069	-0.00132137910148355	0.996038042490691	0.998961028701257
Merged-chr4-83433064-4	chr4	83432569	83433569	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029949, intron 3 of 8)	intron (NM_029949, intron 3 of 8)	15345.0	NM_029949	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	3.97271367783778	4.01666513055645	4.36099644652943	3.88516940517226	4.22347132078443	4.26139683119328	0.0423011610818455	0.933677688608017	0.985581479569838
Merged-chr17-65635907-4	chr17	65635387	65636387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3869.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	6.30239700982585	6.34227393689865	6.24253759167289	6.14639215469168	6.44509706573398	6.50847006503713	0.123835117873322	0.661046543034176	0.906256973552373
Merged-chr16-11455925-4	chr16	11455457	11456457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50309.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	8.49269246260435	8.65329141574293	8.33705436733844	8.41738319459881	8.77062355168665	8.14769837376338	-0.034184131478291	0.892058141290513	0.974942585822634
Merged-chr12-119470450-4	chr12	119469938	119470938	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	27028.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	2.30702141796889	2.27489897087454	2.59520651294347	2.40836865637183	2.16919746373697	2.60883591295717	0.0486028709937062	0.955855170473411	1
Merged-chr17-34640930-4	chr17	34640419	34641419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3964.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	6.64570701478923	6.47028681599133	6.26400466622029	5.78302504467102	6.02255072317887	6.26402242309738	-0.744435818631094	0.0148488878238128	0.131665202263834
Merged-chr5-19901851-4	chr5	19901336	19902336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	MIRb|SINE|MIR	-5682.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	3.05795170884129	3.34013139049725	3.2703205150122	3.01862298268435	3.09540893585435	3.49824052474971	-0.0555263475916259	0.934369022464436	0.985707838096286
Merged-chr19-3767905-6	chr19	3767524	3768524	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167886, exon 2 of 11)	5' UTR (NM_001167886, exon 2 of 11)	603.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	8.01262318648984	8.37538286411654	8.33156419462123	8.21170953923186	8.17984490602006	8.29208922498869	-0.0309302662955652	0.889591823631922	0.974248428244699
Merged-chr6-131269029-2	chr6	131268529	131269529	+	696.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-21667.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	4.73512109150269	5.16666417049448	5.35151652555255	5.20112488528266	5.32264284272665	5.67679473935392	0.616712561772692	0.12504044571133	0.473183800561595
Merged-chr9-75436124-4	chr9	75435630	75436630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5394.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.24022591399686	7.36188878597652	7.28807644542463	7.4062078660879	7.72677097494297	7.17538249453023	0.250527348398705	0.331958048101911	0.723284088925227
Merged-chr1-125472407-2	chr1	125471907	125472907	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-36680.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.40848425593261	5.2249436329443	5.85112211648142	5.48670044636327	5.85974150412946	5.86623050414342	0.447506240134413	0.22189702633408	0.616788023295903
Merged-chr19-3935969-4	chr19	3935482	3936482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 2 of 10)	intron (NM_019449, intron 2 of 10)	796.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	8.27982610989316	8.05017286932621	8.30584121575772	8.36490730291673	8.43026986952718	8.27583807772462	0.205779629400718	0.334881261712971	0.725211462525386
Merged-chr6-88842215-4	chr6	88841720	88842720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030251)	promoter-TSS (NM_030251)	-285.0	NR_155424	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	6.06211844512935	5.99489413026956	6.60604180559458	6.54878381646041	6.35983752560533	6.55257678215546	0.410426412780154	0.187281210080587	0.572221015987422
Merged-chr13-93189075-2	chr13	93188575	93189575	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	3342.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.86359310073217	6.15480452636718	6.15822651267207	6.44620204348947	6.78773578815158	6.59396037162499	0.92101935436407	0.00150920164431396	0.0248413063418101
Merged-chr9-110464198-4	chr9	110463683	110464683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	12511.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	5.12247553124164	5.22329279497497	5.01268307406923	5.01454425858303	5.26277686065114	4.96691298812078	-0.0597588363613827	0.872735872723994	0.970272084673997
Merged-chr2-83729932-2	chr2	83729432	83730432	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5535.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.85266542909795	4.20489831571966	4.48831488976264	4.46893325241141	4.41551781227206	4.77486325779053	0.926231993514991	0.0639472435742348	0.329530082574158
Merged-chr19-21441036-3	chr19	21440512	21441512	+	970.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	L1MC4|LINE|L1	31649.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.10019341093259	3.23958857517747	3.51965654053208	3.00589162215232	2.73628046683436	3.22722000773861	-1.2990949317748	0.0761011152488084	0.363130192223949
Merged-chr15-100543902-4	chr15	100543374	100544374	+	960.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8134.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	4.04902365750308	4.28941126669884	4.36148181586943	4.44085215056477	4.19988634188964	4.10741012240597	0.0663486200526474	0.889617794561901	0.974254013699231
Merged-chr1-131088842-1	chr1	131088342	131089342	+	603.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	9001.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.65728236309138	4.64943597293972	4.65205860163543	4.78661474876026	4.59357562189957	4.79524102328431	0.161352862435407	0.689815180204308	0.917495512399022
Merged-chr16-49819702-3	chr16	49819219	49820219	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-35935.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.81240122964185	3.76122096025247	3.66219753568733	3.69173214343675	3.56761656224888	3.83513043386621	-0.186908779109139	0.730466041903074	0.930884711548651
Merged-chr5-142909603-2	chr5	142909114	142910114	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2860.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	7.14983620531657	6.97046972566704	7.47458855932193	7.496726945514	7.75167938778279	7.66197123040608	0.642960855060541	0.0121195354573694	0.115098341476419
Merged-chr10-118596157-4	chr10	118595645	118596645	+	961.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39620.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.98638729516934	5.96191257242065	6.1302974815197	6.07805997271227	5.98622078856497	6.03919297466949	0.0192939855165304	0.946713581408841	0.988007649185823
Merged-chr2-71866771-3	chr2	71866264	71867264	+	976.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-6460.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	4.55786166271059	4.69112776574898	4.53605059305544	5.20751116407765	5.48286399327272	5.15410787494951	1.51858425010167	0.000111038213725446	0.00309626933232806
Merged-chr13-101698180-2	chr13	101697680	101698680	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	MER91A|DNA|hAT-Tip100	-5550.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.1825401685103	4.33623008369468	4.68271913255967	4.30028664836569	4.3148903387736	4.48170609038687	-0.109904393504075	0.813483886816657	0.955940138311315
Merged-chr6-100416207-4	chr6	100415710	100416710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111190.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	2.77294668841037	2.88539369744061	3.05615319988345	2.89843136938712	2.71593906326388	2.95593171848603	-0.243435303037217	0.733585142964373	0.932153005448542
Merged-chr5-138187888-4	chr5	138187364	138188364	+	900.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009315)	promoter-TSS (NM_009315)	329.0	NM_178612	66455.0	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	5.12252864556418	5.35703418487744	5.42241711437398	5.39904933904555	5.58822115347129	5.70069747647564	0.510510367218697	0.138937630566333	0.497943722067999
Merged-chr2-164794489-4	chr2	164794000	164795000	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 5 of 5)	intron (NM_133240, intron 5 of 5)	8479.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	3.01042480290068	3.21878340184339	3.4377177796375	3.41472472407405	3.43521282774829	3.22871986987058	0.556718098736893	0.389650698719277	0.769279536350629
Merged-chr8-83772835-3	chr8	83772340	83773340	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31529.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.78441211825123	4.53916457124923	4.80536628748876	4.24817053540045	4.12992639762148	4.61224779443271	-0.951627239078941	0.0374944487511411	0.239306442562319
Merged-chr2-92253987-3	chr2	92253469	92254469	+	951.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	32407.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	3.16734824656668	2.97648298332838	3.06971109957738	3.06349136376752	2.91926584841875	3.02311844559879	-0.337311490478981	0.613885557445163	0.887317203673931
Merged-chr2-132282215-4	chr2	132281700	132282700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-3739.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	4.99409958883595	5.02770611022336	4.7636100883465	4.57745263977405	4.5132800573995	4.58335351800599	-0.898485952873012	0.0258022289721984	0.190467695911878
Merged-chr19-42092656-1	chr19	42092156	42093156	+	622.0	f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	B3|SINE|B2	2221.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	3.7511898607178	4.18428420996432	4.38281228368715	4.01354417233949	3.82980033046051	4.06522748753573	-0.458100113917826	0.393312720397185	0.771515439837752
Merged-chr1-105992649-3	chr1	105992150	105993150	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	2244.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	7.32250301199113	7.74552582947318	7.02450126875442	7.67674427729421	7.91870036386573	7.27061252209429	0.362024166096718	0.235987576347715	0.632279217060081
Merged-chr1-36836684-3	chr1	36836198	36837198	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 8 of 40)	intron (NM_018872, intron 8 of 40)	57714.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	3.65561222154484	3.56575332585049	3.65490944694733	3.72136405840966	3.79851549504649	3.87660464601467	0.582764197629624	0.27613497017881	0.673426495461133
Merged-chr9-106170887-4	chr9	106170412	106171412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029896)	promoter-TSS (NM_029896)	-17.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	7.50980334042337	7.49192253367196	7.17315642373133	7.35927358011577	7.2853565908093	7.23044012320351	-0.17022744490017	0.479997982422482	0.824450336912929
Merged-chr18-69595529-2	chr18	69595029	69596029	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249369.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.04240454780248	5.98824362247722	5.78613238777111	5.8909415069579	5.79087053023392	5.47036926651576	-0.373721907489069	0.24602992723485	0.643182480464067
Merged-chr9-101035369-1	chr9	101034869	101035869	+	828.0	f1_balb.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-485.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	7.15436788306306	7.64093173852671	6.9366879945112	6.70709564903957	6.8541556176766	6.58866520543247	-0.853660215962948	0.00383924984758045	0.0503994755613996
Merged-chr10-128695273-2	chr10	128694773	128695773	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	995.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	6.02243183968232	6.26028449157217	6.06456737901664	6.10900852290088	6.27375884988084	6.29275594274193	0.173326594638878	0.546886745031228	0.859122198966997
Merged-chr14-70889950-4	chr14	70889447	70890447	+	876.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-160.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.89702214791875	4.93521395669706	5.77975515912863	4.82451418305684	4.55204642908815	4.65323976002861	-1.25341768958341	0.0071518478566506	0.0793983931229064
Merged-chr4-138325760-4	chr4	138325296	138326296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026880, intron 1 of 7)	CpG	500.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	7.49237470739255	7.71247771426908	7.58453148303321	7.79579923470869	7.52367086517712	7.51315714330657	0.0260739506701432	0.91158554222611	0.980154516820379
Merged-chr16-91485833-2	chr16	91485333	91486333	+	831.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	618.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	6.85835460349351	6.99711689233596	7.07215573973687	6.85808203411625	6.98174932542419	6.98708243433942	-0.0478816597459561	0.845319637860498	0.963773214686551
Merged-chr4-155894426-4	chr4	155893928	155894928	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2553.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	4.61025935690264	4.80586258879542	4.96530197212356	3.9085880898761	3.53448996634166	4.03573868861007	-2.82828530722804	1.74062419397912e-07	1.1614583635334e-05
Merged-chr6-88053912-4	chr6	88053419	88054419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.47719487445001	3.26505534796982	3.35034176337112	3.3951600415861	3.35283820921509	3.05603040598199	-0.335139807399551	0.602971987870485	0.882484631305431
Merged-chr15-100732799-4	chr15	100732295	100733295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045781)	promoter-TSS (NR_045781)	-58.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	7.38803132725572	7.18749180420533	7.02721684961901	7.05457636318225	7.25231265389505	7.00235993384909	-0.152460444452718	0.547287915875482	0.859256588783723
Merged-chr4-134460465-4	chr4	134459975	134460975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-7845.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	3.35901016300222	3.0813896229936	3.03900418258311	2.90187034495547	2.74830862097986	2.86158823895073	-1.6393411850534	0.0230978725085206	0.177690003056353
Merged-chr9-35051082-2	chr9	35050582	35051582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65646.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.68290962856204	7.6619408553013	7.61471668164487	7.52710050451404	7.95082998637157	7.56511506370168	0.0723919566431936	0.765282031117847	0.942137701159565
Merged-chr5-145116535-4	chr5	145116030	145117030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2274.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	6.98883872985672	7.01205003191872	6.94102929337213	7.24774283489045	7.30742322715135	7.1332000816975	0.382254000676752	0.105283911584435	0.433063940614814
Merged-chr12-91765802-4	chr12	91765283	91766283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B4A|SINE|B4	20653.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.6317615156504	8.93839491106785	8.4174165480961	8.75055856253443	9.07074054832401	8.51300150554706	0.163604672967906	0.524867458737748	0.848833934932934
Merged-chr11-119354980-4	chr11	119354486	119355486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178743)	promoter-TSS (NM_178743)	524.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	7.73154686298774	7.9513600829245	7.29459671816151	7.6409563891758	7.87475727378009	7.44465917451068	-0.0354063668137597	0.898111560739674	0.976261391798139
Merged-chr7-118244617-2	chr7	118244117	118245117	+	856.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001031814)	promoter-TSS (NM_001031814)	710.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	5.85482046068368	5.7205935577149	5.61874295209766	5.79481539003439	5.39124835331973	5.50763204091047	-0.307571474542326	0.357300321535542	0.743882424811519
Merged-chr11-58009335-2	chr11	58008835	58009835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028451, exon 1 of 19)	exon (NM_028451, exon 1 of 19)	271.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	8.12413865205689	7.99300367530347	8.05649625234349	8.43387859617359	8.0296002281238	8.36183126879048	0.316322142043583	0.165649250470012	0.54084139035153
Merged-chr1-172552925-3	chr1	172552412	172553412	+	859.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2106.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	3.1595449959992	2.94757565830865	3.12829456920011	3.49780694084893	3.39529773394018	3.43236466013937	1.51985019160818	0.01800994344627	0.150822400792797
Merged-chr19-47220420-1	chr19	47219920	47220920	+	1000.0	f0_c57.idr	intron (NM_021360, intron 1 of 5)	(CACAT)n|Simple_repeat|Simple_repeat	-8423.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	2.6562073865069	2.94509588906324	2.7887718860874	3.20123450873926	2.95456509618922	2.99010455856084	1.19476440671407	0.103310867061171	0.42844351208263
Merged-chr2-6081361-1	chr2	6080861	6081861	+	570.0	f0_balb.idr	Intergenic	MER63D|DNA|hAT-Blackjack	48824.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	1.89100595134294	1.86365777306656	2.08952249119457	1.77225130441674	1.86208925648458	1.90294033004542	-0.880197786585363	0.373507000317558	1
Merged-chr5-142815500-4	chr5	142814995	142815995	+	829.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	1892.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	5.63409617761494	5.40826538701	5.99898887480292	5.96396876274823	5.83740203269731	6.71644763360684	0.920783349824534	0.0185342333341722	0.153712397814193
Merged-chr19-12427147-2	chr19	12426650	12427650	+	661.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019540)	promoter-TSS (NM_019540)	-755.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	2.15390130242285	2.11393139457111	2.217772773947	1.8920312981996	1.81400177547757	2.02887825307584	-2.30810978160187	0.0290173459245151	1
Merged-chr11-88046746-2	chr11	88046257	88047257	+	895.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173374)	promoter-TSS (NM_173374)	-616.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	5.44807556135195	5.55263255866399	5.85291310274159	6.22074946955229	6.24498249339132	6.18067322788636	1.06294298250251	0.000532581209988208	0.0110236361494276
Merged-chr14-62808835-4	chr14	62808337	62809337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045503, intron 2 of 6)	LTR16A|LTR|ERVL	-28853.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	5.64466154214607	5.56933920836533	6.00372554829192	5.43103545684798	5.35871322016014	5.7492977695084	-0.428125897594284	0.219237482206945	0.613310664990434
Merged-chr8-120752113-1	chr8	120751613	120752613	+	613.0	f0_balb.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	13474.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.9866152649794	3.88787380672387	4.04853675955997	3.74898353453926	3.83715124614892	3.97648441056879	-0.369723603990504	0.467823528057375	0.81815434317961
Merged-chr6-115662366-4	chr6	115661881	115662881	+	687.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	B1_Mur1|SINE|Alu	13507.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.68405897981592	5.85791645779085	5.60925369801665	5.73456157836044	6.1200938591846	5.78194825410309	0.31165386025116	0.338404461986681	0.728352844724381
Merged-chr16-91011180-4	chr16	91010679	91011679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028368)	promoter-TSS (NR_028368)	-70.0	NR_028368	67394.0	Mm.491293	NR_028368	ENSMUSG00000087354	4930404I05Rik	-	RIKEN cDNA 4930404I05 gene	ncRNA	9.2118291451543	9.39501089965617	8.93401035469483	8.95944857139024	9.27009519372237	9.04023819483916	-0.135339050755133	0.552445791984645	0.861725957173409
Merged-chr9-32146429-4	chr9	32145945	32146945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	30309.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	5.68201559127609	5.551012080749	5.39801137848751	5.76863308976854	5.55866733483428	5.39822844715771	0.0621063330060784	0.853976265656104	0.965878769929691
Merged-chr17-10391922-1	chr17	10391422	10392422	+	573.0	f1_balb.idr	Intergenic	Intergenic	-64294.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	6.85155785015741	6.91821886358981	6.78698984669214	6.85605841692642	6.99225113362005	6.70206844973053	0.0125141891929076	0.960626284362544	0.990386809359123
Merged-chr13-119434542-1	chr13	119434042	119435042	+	569.0	f0_balb.idr	intron (NM_145457, intron 2 of 10)	intron (NM_145457, intron 2 of 10)	5640.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	3.07736405677009	3.2026843493902	3.03440074676148	2.956001786003	3.01488914130097	3.10675175187937	-0.38474770667636	0.561087784135634	0.865407287431561
Merged-chr6-124813194-2	chr6	124812694	124813694	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	1102.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	4.71201590982307	4.78632969766331	5.19764386974114	5.08523403848598	5.0114751667869	5.31944599208042	0.503131659338057	0.207836509762733	0.59868364609575
Merged-chr11-117118113-2	chr11	117117613	117118613	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	4.5SRNA|scRNA|scRNA	2941.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.23027645570949	6.38053598107145	6.0793038157014	6.69726240160102	6.92162673780255	6.18795404740971	0.661214853474857	0.0375381968657881	0.239475449268458
Merged-chr3-8770908-1	chr3	8770408	8771408	+	823.0	f0_balb.idr	Intergenic	Intergenic	-103870.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.56660990574898	3.5736168752643	3.68344063494382	3.36067065498069	3.37717674529079	3.70289883427913	-0.453583745208609	0.436418906480561	0.799479240757292
Merged-chr7-88304650-4	chr7	88304148	88305148	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	26563.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.91851929970633	6.11842589676969	6.11646994181685	6.01919043738159	6.33333174156821	6.04416440311744	0.168269321982251	0.574515932608255	0.870773088875341
Merged-chr17-26578552-2	chr17	26578052	26579052	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	17040.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.02432633369826	3.02717615832004	3.1479730587447	3.14965752328997	2.83353780659866	2.79023857036262	-0.598951684112109	0.398916556203851	0.775491025064514
Merged-chr11-44375612-2	chr11	44375116	44376116	+	590.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-24447.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.03673282757286	3.01234464858737	3.36360588117365	2.95697546485542	2.89667087098753	2.80073252053172	-1.17491505485695	0.0992528727854311	0.42004541385646
Merged-chr4-9118446-4	chr4	9117924	9118924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150869.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	5.7553231027143	5.60029685473165	6.04822647970399	6.10696297771594	5.94339139798551	6.19068925403913	0.484806800141501	0.124843731593407	0.472697361595567
Merged-chr9-44094246-4	chr9	44093748	44094748	+	741.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-7522.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	2.67389870985649	2.90796232346743	3.14954744384415	2.6948295272836	2.62403265599912	2.76351304834491	-1.17701977201486	0.123211915071929	0.46964642109973
Merged-chr8-90869648-5	chr8	90869155	90870155	+	864.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	40820.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.84500580649324	6.95804639521214	6.75105894005768	6.59915845285391	6.44137695873053	6.48873466415215	-0.55116266948809	0.0322948498258129	0.218399696383797
Merged-chr3-105688259-2	chr3	105687759	105688759	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-688.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	7.26501955017622	7.39735339408531	7.12001902108512	6.95162329362686	7.00758118960966	7.00646776717342	-0.427191163661009	0.0758382850797934	0.362539808419832
Merged-chr13-10599423-5	chr13	10598921	10599921	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-238618.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.6167734907944	3.59992985107468	3.58303862870859	3.54045636303635	3.60282095922533	3.75626046283583	0.107001878806495	0.84630494332249	0.963987423586105
Merged-chr7-16740955-2	chr7	16740455	16741455	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	URR1B|DNA|hAT-Charlie	2511.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	2.75436499653313	2.57893335144656	2.87401155990511	2.73010643773527	2.536369369888	2.88823008486112	-0.08893733887235	0.907608717905558	0.978965119317186
Merged-chr1-58617930-2	chr1	58617430	58618430	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	31533.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	4.35503334787858	4.72192187312615	4.49634212326087	4.54938285319296	4.56913865563067	5.18911259718137	0.601929572641771	0.199003719412677	0.587423864896856
Merged-chr5-145200620-3	chr5	145200136	145201136	+	783.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023322, intron 1 of 2)	B3A|SINE|B2	1246.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	5.82514081649037	5.78174673925819	5.70108316916433	5.95635514470549	5.99465310783521	5.62290689935421	0.191041752295128	0.544062894027209	0.857551302506722
Merged-chr2-71315521-4	chr2	71315032	71316032	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	52022.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.22894860838	5.73758221836474	5.68067352585549	5.75627066225304	5.84425717899892	5.74268683032171	0.400796703940666	0.240968770323534	0.638007204328764
Merged-chr11-77214455-3	chr11	77213962	77214962	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1963.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.51631842513721	3.34339822609412	3.55635592992391	3.3341141749089	3.44542847858384	3.86691492649313	0.319035346259343	0.601256898409385	0.881898948141997
Merged-chr18-49832602-4	chr18	49832116	49833116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081371)	promoter-TSS (NM_001081371)	-381.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	7.79143926480793	7.69915715095092	7.55502019158814	7.81737631445516	7.62088543463154	7.46769766777907	-0.061431916650941	0.793704250175235	0.950531747588938
Merged-chr13-56135522-4	chr13	56135029	56136029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159514)	promoter-TSS (NM_001159514)	21.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	7.73601279528746	7.56231502215565	7.44569694062446	7.99120118402871	7.41772828478945	7.4708076655824	0.0955535167813402	0.722401203752097	0.928791980002542
Merged-chr4-59471559-3	chr4	59471066	59472066	+	789.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178164)	TTS (NM_178164)	-32933.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.26640122248506	4.28651964464855	4.10381501681742	3.76731943548472	4.23907641622081	4.0759687753344	-0.49392231954234	0.333795713968767	0.724614206827878
Merged-chr9-57765119-4	chr9	57764654	57765654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007713, exon 1 of 13)	exon (NM_007713, exon 1 of 13)	706.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	9.2106220566561	9.70200292342779	9.14483353591615	9.20067469897894	9.25325225836843	9.25476462943824	-0.197992558809068	0.39652849099477	0.773652887901204
Merged-chr4-57958406-4	chr4	57957890	57958890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	6.73761107366818	6.89998270024906	6.99449605706594	6.71520575679217	6.94517311942306	7.01328113184486	0.0288206193059602	0.911040253800064	0.980017061055921
Merged-chr19-34570207-4	chr19	34569709	34570709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	-13320.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	6.85031979763034	6.49195147109424	6.32533526852415	7.13981737051099	6.99675356397098	6.56416072499797	0.539928986614269	0.0777246374093336	0.367983592008867
Merged-chr11-69630126-2	chr11	69629626	69630626	+	944.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2845.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	4.31585229247619	4.03491476590598	4.27211691283149	4.37028894020658	4.26798678922894	4.5476031524249	0.485374756454838	0.29692160773041	0.693511179566253
Merged-chr10-56174015-4	chr10	56173516	56174516	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033385, intron 13 of 32)	intron (NM_001033385, intron 13 of 32)	54673.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	4.44438876837111	4.33757575568073	4.42425645816965	4.94157119572035	4.99061711587201	4.93319797613616	1.31722588974128	0.00115543011152187	0.020139856743711
Merged-chr15-50751201-3	chr15	50750724	50751724	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	137825.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.41399525523796	3.3259726522945	3.00447547771341	3.23904328297762	3.27309441786658	3.3238211982402	0.0443836486445261	0.945973276751075	0.98796006280508
Merged-chr17-28224184-4	chr17	28223691	28224691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 7 of 10)	intron (NM_027185, intron 7 of 10)	-8563.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	3.47484241550512	3.53098487394857	3.56141720366972	3.33981605640064	3.44943733693665	3.35767048927654	-0.507362356237141	0.385132651723453	0.76623192225821
Merged-chr3-61595759-4	chr3	61595262	61596262	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231255.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.07878824360765	2.78858486439951	2.8785213247531	3.03913790639495	2.79898020424381	3.13003479015102	0.322510558058354	0.652145622410126	0.902896807825606
Merged-chr16-49818766-4	chr16	49818275	49819275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.3969172106707	6.39196001397824	6.38507587006847	6.3164422695353	6.45109725164218	6.40719116078651	0.00482778995764977	0.985522191173809	0.996904015210561
Merged-chr2-167798129-4	chr2	167797621	167798621	+	884.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106944.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.6357829625055	4.12527144832991	4.96660654951023	4.31297005348048	4.22450816725264	4.83713473545732	-0.32612905505296	0.534909387929322	0.853246306855744
Merged-chr19-37208312-4	chr19	37207838	37208838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	793.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	8.33642592125011	8.40400133327881	8.2501079416942	8.62961984217574	9.06843931942257	8.38714327693152	0.556256100232357	0.0271690663757618	0.196308064865786
Merged-chr2-32784503-4	chr2	32784024	32785024	+	947.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025619)	promoter-TSS (NM_025619)	-119.0	NM_025619	227736.0	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	3.49304791643647	3.28420204812629	3.11223236829824	3.08849540599237	3.09082257937945	3.35963591919028	-0.540730458297589	0.41137472007268	0.783877099438722
Merged-chr13-117018850-2	chr13	117018350	117019350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	6666.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.32465190062607	3.37601342903567	3.24164675297626	3.29994507607046	3.61789369385948	3.53941954488725	0.671549337785276	0.269619880425098	0.666761702690033
Merged-chr2-167961236-4	chr2	167960758	167961758	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28931.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.88324788409442	7.11232866677563	6.81229139655152	6.29957291337394	6.79574588981287	6.44735561442872	-0.631046714841472	0.0287753350259443	0.203375356904678
Merged-chr10-53888869-4	chr10	53888301	53889301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137892.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	5.19669488965885	5.4592428411713	5.08510340686041	5.06354625211062	5.06558737444156	4.76023951771835	-0.589865731974217	0.126024051783988	0.474777397325473
Merged-chr14-73436773-2	chr14	73436273	73437273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51484.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.69452548461746	4.98271427978454	4.72533067878305	4.85703270448664	4.82419887114783	5.61250289793938	0.706393058554317	0.118074112744759	0.458969951100903
Merged-chr2-52924518-4	chr2	52924010	52925010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	66642.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.15481183459935	7.05440834122279	6.90302573816952	6.77049078906624	7.01771180936316	6.66168380594669	-0.321967945074663	0.218683950544614	0.612833563145502
Merged-chr13-49199895-7	chr13	49199379	49200379	+	837.028564	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12332.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.47377550811375	8.81470414729927	8.46588789388333	8.42687522452372	8.76880709302715	8.28764050952572	-0.112461465201512	0.645460686373841	0.900561664422279
Merged-chr17-25273496-4	chr17	25273005	25274005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	-74.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	9.01073018794007	9.19519303515152	8.62794629659064	8.94502338111622	8.86002964395179	8.64163975037276	-0.201591828732868	0.399923867965245	0.776248940201881
Merged-chr13-90516116-4	chr13	90515609	90516609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	389246.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	4.43360122887121	4.37433835600584	4.38141198835462	4.15865226322741	3.82265316262442	4.08431243645893	-1.05438907847857	0.028404072671139	0.201822609202602
Merged-chr6-112718199-4	chr6	112717687	112718687	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-21517.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	4.40494517625091	4.80805871956032	4.97784627569403	4.54988885717564	4.56956899271659	4.56593266046423	-0.432511257887492	0.325374963623429	0.718124347934101
Merged-chr14-65833312-2	chr14	65832812	65833812	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028039, intron 1 of 10)	intron (NM_028039, intron 1 of 10)	657.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	4.37139308766857	3.96995454256516	4.35367391970171	4.29565530009953	4.28872223970615	4.09943656204186	-0.0118572639959227	0.980543857411686	0.995512982807197
Merged-chr18-53091030-3	chr18	53090541	53091541	+	900.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-85251.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.0756396944283	2.99775194751892	3.10054381544061	3.70725145542059	3.77917775452707	3.74557633762004	2.93725969191782	1.37679446717319e-05	0.000528414732585547
Merged-chr17-71164722-2	chr17	71164222	71165222	+	973.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18810.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.69000190239638	7.31049564718869	6.72969286488882	6.54344366893358	6.85563664759312	7.05815780847332	-0.181871544746247	0.560708433148347	0.865261302076164
Merged-chr9-119985051-2	chr9	119984551	119985551	+	844.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153287)	promoter-TSS (NM_153287)	-309.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	2.57477900994995	2.57274072214821	2.70698249826625	2.68529968960266	2.71380329819198	2.77991046454495	0.605851611785593	0.41446432579777	1
Merged-chr10-17727930-4	chr10	17727384	17728384	+	977.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4656.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.44277400197775	4.37393437503634	4.41355997409032	4.24367092573635	4.53052409703872	4.6778771917818	0.208747331998052	0.639954498426826	0.898255496259518
Merged-chr2-59183698-2	chr2	59183198	59184198	+	856.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	22848.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	7.2461940700531	7.35365423024966	7.06007374862432	7.26418736627583	7.66586042906914	7.0909482667836	0.214243197467203	0.43122458043409	0.796745026686968
Merged-chr13-41521509-4	chr13	41521001	41522001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-34141.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.99622532187334	7.07011014648649	6.88761073330481	6.84956362749414	7.12348875040803	6.84164508303788	-0.0570569068819001	0.822341339700739	0.958041123079214
Merged-chr13-54789912-2	chr13	54789396	54790396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028841, intron 1 of 7)	CpG	491.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	4.57055159567993	4.16822921461247	4.41946326024749	4.19429356052977	3.92351803226092	4.31633287789488	-0.682077474524736	0.163937911747591	0.537947679388049
Merged-chr17-45553982-2	chr17	45553482	45554482	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1718.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	2.11807680778962	2.01768672220634	2.02445488565792	2.1725525466037	2.0195188308163	2.35905711274593	0.983703286740654	0.288986053129263	1
Merged-chr4-150523558-2	chr4	150523047	150524047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	128627.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.17847797321793	2.98097549883879	3.10853638306387	3.10070625906727	2.89674794653048	3.23688617520025	-0.0564194860383638	0.933296000692525	0.985392902830318
Merged-chr7-44858103-4	chr7	44857612	44858612	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290764, intron 2 of 16)	intron (NM_001290764, intron 2 of 16)	709.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	5.43241252063699	5.35866683958376	5.46646385608913	5.64868034990649	5.71504279639239	5.8207373424059	0.582148629959211	0.0688332698072131	0.343250552206556
Merged-chr11-116785042-1	chr11	116784542	116785542	+	576.0	f0_balb.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-9535.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	5.66052699018641	5.43165495467498	5.50789406983622	4.08002099952587	3.81518516769556	4.14965142752812	-4.05033089854051	1.76895181176217e-15	5.28121568215664e-13
Merged-chr1-40325295-2	chr1	40324795	40325795	+	811.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133193, intron 1 of 10)	intron (NM_133193, intron 1 of 10)	706.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	4.50842005069344	4.88976640520103	4.46878083715041	4.62218951485627	4.58384229442987	4.96093362126434	0.182558583593047	0.680144953241631	0.914139397449033
Merged-chr17-24488345-2	chr17	24487845	24488845	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027937)	promoter-TSS (NM_027937)	-438.0	NM_001360469	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	2.57168050281635	2.46724561764054	2.71313253313298	2.66352467445895	2.4243411445362	2.40220794217497	-0.476847023006707	0.556520508680739	1
Merged-chr10-96687047-2	chr10	96686547	96687547	+	789.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70046.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.996667571509	4.66138111362396	5.04145020010576	4.91249053616011	4.63001611114007	5.2294333765578	0.0638157385492261	0.881156240242736	0.97262624933271
Merged-chr11-103411085-4	chr11	103410684	103411684	+	853.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	1480.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	5.37909369403729	4.93453616700257	4.90654874863136	5.35153662707612	5.58996433283679	4.93386536527206	0.468545022357045	0.260164836883102	0.657649400461384
Merged-chr9-116111836-3	chr9	116111324	116112324	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 3 of 6)	URR1B|DNA|hAT-Charlie	63539.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.37923899302315	5.17019487707276	5.40543638702408	3.97804087752963	3.97199847747724	4.52503628521756	-2.88354943798201	1.49479008881841e-09	1.60281564059797e-07
Merged-chr14-86679049-3	chr14	86678557	86679557	+	735.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 27 of 27)	B4|SINE|B4	433087.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	2.86193396339674	2.80904606252824	2.99886839074021	2.59934812223564	2.48891021461737	2.71606133878315	-1.64645338786181	0.0346019461409407	0.228038186628083
Merged-chr11-6484570-6	chr11	6484085	6485085	+	874.5361330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8509.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	4.95625588351748	4.82105245295974	5.49749224777229	5.09179198818944	5.25387391201015	5.33975610336796	0.245846895596328	0.543168627214442	0.857511006968074
Merged-chr9-21161498-4	chr9	21161016	21162016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4198.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	6.41278133930255	6.03535637790707	5.67938913731747	6.14577686898544	5.91575938941547	5.82688219074051	-0.202344685162624	0.556109608377535	0.86357390983939
Merged-chr5-125349356-2	chr5	125348856	125349856	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8262.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.21028946589347	4.14905636366617	4.1555530766537	4.46281521522125	4.23846271865171	3.97057925186466	0.202385393871212	0.676776960992763	0.912549881054299
Merged-chr8-26687222-4	chr8	26686732	26687732	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137191.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.70798873559095	4.31141587546824	4.62625211906054	5.0644133621272	4.59046740468482	4.98894027357997	0.773086841733796	0.0808794355252918	0.376303739162854
Merged-chr6-56798437-2	chr6	56797937	56798937	+	788.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	-624.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	7.50686888155077	7.81453213887954	7.5348225431527	7.41523000431678	7.8575875061027	7.45795700571069	-0.0411469957237455	0.873328196025531	0.97040331531529
Merged-chr3-127410422-3	chr3	127409934	127410934	+	994.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-1376.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.1789052322009	3.1364675951939	3.28482173235566	3.98874002069887	3.8956329302438	3.8101710982957	2.77050525610758	1.10675387942988e-05	0.000436508115849078
Merged-chr7-126181317-2	chr7	126180817	126181817	+	590.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	19184.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	4.79236453675876	4.2551761180668	4.39440246789853	4.45481428599757	4.38956029158092	4.62921022210633	-0.0455580039702779	0.921836356848645	0.982542868764899
Merged-chr1-154105006-4	chr1	154104514	154105514	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-96173.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.00574389979175	5.77588161169488	5.87943781287714	5.79965527432599	5.99156767990192	5.76329451479229	-0.0468529236220293	0.879105715781277	0.972074795996392
Merged-chr6-32588169-4	chr6	32587656	32588656	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	36.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	5.14985884547572	4.73114081672391	4.89632992473761	4.93355367525901	4.37212999634776	4.60642432941156	-0.644190363067101	0.146058962129414	0.509720845567433
Merged-chr7-19744769-4	chr7	19744268	19745268	+	768.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	4805.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	2.69881321908369	2.78336133397939	2.80297614351795	2.82237755303187	2.61401153173708	2.99320968674297	0.262077400674672	0.723125347642524	0.928989158354973
Merged-chr5-134932291-4	chr5	134931799	134932799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-74.0	NM_001359536	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	5.45370887227939	5.17221287154338	5.2831950165061	5.15926789618685	4.66645591775683	4.97613622491373	-0.766074321130095	0.0502827831834062	0.285358738448019
Merged-chr3-45284080-3	chr3	45283583	45284583	+	902.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045172, intron 6 of 8)	intron (NR_045172, intron 6 of 8)	94177.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	3.12023913240551	3.17388278496831	3.35343629606946	2.95164401483221	3.10335843383434	3.02975805403015	-0.79969494280779	0.228479230454531	0.623648465019703
Merged-chr10-79705877-2	chr10	79705377	79706377	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	1519.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	2.92915220666851	2.75782751006552	2.90716275871151	2.87813565053893	2.89824553321884	3.09544903712947	0.440247276996985	0.528227043538541	0.850495873730805
Merged-chr2-35110642-2	chr2	35110142	35111142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	1150.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	6.57107524997443	6.46101935569903	6.02103434453254	6.67561973233113	6.82494258119395	6.49314162966615	0.468803576328732	0.117897523720063	0.458562013448279
Merged-chr3-88145441-2	chr3	88144941	88145941	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	3069.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	4.22034116826403	4.51581501249048	4.35085005255751	4.17513883588466	4.00193270106636	4.45928010056598	-0.42043945658873	0.383039576165621	0.764517188073328
Merged-chr5-130078294-4	chr5	130077795	130078795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	-1075.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	4.01347622483555	3.9377036612954	4.12851768201428	4.3281827113135	3.96466555877459	3.79017771493293	0.0793891040117412	0.879121859796462	0.972079729305179
Merged-chr13-59562697-4	chr13	59562169	59563169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5322.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	3.63394059898892	3.84184916735107	4.09576128954738	3.62463100033011	3.30595286538352	3.59097975261664	-1.22324962170699	0.038721142795685	0.243991582714377
Merged-chr17-26885169-4	chr17	26884664	26885664	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31927.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	5.21322017313989	5.00122923012371	5.46901134814748	5.35029819068208	5.4028804084596	5.09256030481454	0.136168828140691	0.715291742332358	0.926364539463507
Merged-chr3-59175441-4	chr3	59174930	59175930	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	19674.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	2.8151991262334	3.00458072204521	3.09525020697637	2.84984490504457	2.88998187570271	2.93658697810463	-0.394162870833229	0.571267599706262	0.869428183241799
Merged-chr2-27754248-2	chr2	27753748	27754748	+	602.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011305, exon 7 of 10)	exon (NM_011305, exon 7 of 10)	43665.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.92250412394515	3.74582988621643	4.3243740795032	4.18155535987756	3.61399763549971	4.22665193685177	0.0534926609492611	0.926341918996097	0.983439764163303
Merged-chr14-46704363-1	chr14	46703863	46704863	+	729.5	f0_balb.idr	Intergenic	Intergenic	-30588.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	3.17673496978649	3.03712784661404	3.18231512870366	2.67158327117745	2.57172439480125	2.77968965324302	-2.61060714204506	0.00114338645437575	0.0199997687819418
Merged-chr3-126611629-3	chr3	126611083	126612083	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14632.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.65204980015338	6.80309612740457	6.33672489697836	6.69146255998476	6.5264370704894	6.60269783298106	-0.0271350561729244	0.922347194722418	0.982542868764899
Merged-chr2-128817962-4	chr2	128817497	128818497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028248)	promoter-TSS (NM_028248)	-306.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	7.77076847516253	7.80556651465034	7.80925687582045	7.61670406569132	7.59121837227479	7.53081855978957	-0.307901013048949	0.151521002152094	0.518952882025607
Merged-chr10-81366239-4	chr10	81365721	81366721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-401.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	6.62709552655504	6.36800169871269	5.95037181730374	6.27649698647778	6.25911797201729	6.26486032642748	-0.151979805787694	0.62502027121712	0.892343760872911
Merged-chr7-102249572-4	chr7	102249085	102250085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	533.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	7.6544152242958	7.66734663348388	8.05768686530412	7.79975887111311	7.94726060783768	8.14035229175767	0.23806768048641	0.332165013703142	0.723387053255178
Merged-chr15-74955371-9	chr15	74954931	74955931	+	956.8037109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164036, exon 1 of 4)	5' UTR (NM_001164036, exon 1 of 4)	325.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.21775265466172	6.26737546468861	6.77511696996331	6.99640035819226	7.02646829705613	6.71133191303496	0.777537253035497	0.00853241184560848	0.0901811908639625
Merged-chr8-34153649-2	chr8	34153149	34154149	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026432)	promoter-TSS (NM_026432)	-914.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	4.38349209724817	4.24000349361382	4.04447351873002	4.36562937450512	4.35990069081377	4.11543028564883	0.145226591952904	0.76030768252807	0.940712904146702
Merged-chr7-101599485-3	chr7	101598988	101599988	+	573.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1ME|LINE|L1	-18327.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	5.73940689933175	5.28657590681654	5.46345056619274	6.00967563237359	5.95749731570927	5.67406912518376	0.696919428989971	0.0409090117000705	0.252260997601008
Merged-chr5-3492805-2	chr5	3492305	3493305	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51028.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.9718034598382	5.87007183103178	5.5028982280553	5.56678754304674	5.60274290972112	5.70905337641389	-0.339019779343606	0.303304180257873	0.699902971652469
Merged-chr9-66914019-2	chr9	66913519	66914519	+	623.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	5686.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	4.70353335715573	4.16937167497467	4.29991342686137	4.40976359115454	4.34793728358723	4.5413530835712	0.0320798786269828	0.945846326275497	0.98796006280508
Merged-chr2-91206452-4	chr2	91205943	91206943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 6 of 10)	intron (NM_001357067, intron 6 of 10)	3531.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	7.7988891008828	7.61943483458461	7.66377859858501	7.69461186970622	7.71016254261524	7.74690222962892	0.0273335450586716	0.900279450807415	0.976731893119283
Merged-chr11-83302172-2	chr11	83301672	83302672	+	975.0833130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-525.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	6.75364035081493	6.87604273532909	6.58732398468596	6.87269398448227	6.83359791961735	6.86986315923351	0.162974260809386	0.520873405910043	0.846798373626721
Merged-chr11-102284319-2	chr11	102283819	102284819	+	679.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-501.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	3.93414236596347	3.81470637840051	3.84972487948621	3.9097797205057	3.68545375572505	3.8173920028046	-0.205404591168709	0.693370704873737	0.918942860505772
Merged-chr2-153123421-2	chr2	153122921	153123921	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14953.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	5.62392661561377	5.66816534373873	5.61200196318415	5.20706415491605	5.41222731527473	5.64747979976412	-0.398609287023055	0.237274823626507	0.633672456067794
Merged-chr16-38562802-4	chr16	38562318	38563318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	4.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	7.55740760075827	7.59656044918026	7.17114076984519	7.4388078288038	7.62180470150473	7.06722918623517	-0.0827074500937476	0.763039836649361	0.941682496514445
Merged-chr6-124727374-2	chr6	124726874	124727874	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 9 of 15)	intron (NM_001077705, intron 9 of 15)	5780.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	3.91553665588051	3.92698297473236	4.25218519377105	4.49639998503597	4.32015601284455	4.32006518868646	0.98102081684734	0.0406107421799405	0.251274437485759
Merged-chr1-139008039-2	chr1	139007539	139008539	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30382.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.9342078407576	4.66261099500326	4.85410083078592	4.67351998281151	4.59148727581622	4.56484616543938	-0.48709027667779	0.232260659617673	0.628567780051626
Merged-chr9-78538765-4	chr9	78538216	78539216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 10 of 10)	intron (NM_172773, intron 10 of 10)	49329.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	7.42613271832823	7.473996326415	7.30036022929334	7.17231120177293	7.49654849334155	7.15182438878912	-0.166750855899005	0.498951665572555	0.834166852012946
Merged-chr15-76899257-2	chr15	76898753	76899753	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-688.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	4.99822277310333	4.86373610522467	5.04175331920867	4.95311243536528	4.46842321282139	4.82229878876818	-0.473242474433977	0.251904333257113	0.649428218365646
Merged-chr4-141182126-4	chr4	141181588	141182588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 4 of 9)	ORR1C2|LTR|ERVL-MaLR	-31868.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	4.66878155975277	4.53888375100105	4.72246846803609	4.62480925528219	4.64369859909767	4.86081238235718	0.155271782335071	0.704634648109528	0.922488097794635
Merged-chr10-98951668-5	chr10	98951153	98952153	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	36501.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.04141971929845	5.08735721610021	5.02462183196956	4.98408202055622	4.7382233741297	5.1225009271155	-0.233278758173919	0.541994550459401	0.857034750433211
Merged-chr9-24499710-4	chr9	24499207	24500207	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	3433.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	4.55621392238168	4.66319891516283	4.7131354439801	4.48869879297002	4.20721646829107	4.62602041914306	-0.504923908419892	0.250900903521746	0.648252208670623
Merged-chr8-22594517-2	chr8	22594017	22595017	+	710.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-704.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	6.17860188236763	6.91939887152321	6.60850341364941	6.47505139169511	6.75470723221198	6.39768840040264	-0.0790941983466083	0.806167436167277	0.954121451132953
Merged-chr9-124121520-4	chr9	124121004	124122004	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009917)	promoter-TSS (NM_009917)	-39.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	7.63708795192025	7.95757909506537	7.32156412417546	7.91184851361389	8.15268732729671	7.63863446649448	0.359266010077862	0.196672600548281	0.584656761837274
Merged-chr4-109199609-4	chr4	109199119	109200119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	2653.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.19961212519517	5.43921923135342	5.15352256045081	5.17177970350314	5.11227750778276	5.28316535631826	-0.189502576719115	0.596396512205123	0.879911021114935
Merged-chr18-84684342-5	chr18	84683925	84684925	+	904.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	intron (NM_023149, intron 1 of 11)	1277.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	6.10233759175027	6.06008767369174	6.16445060216013	6.09627817311549	6.16409259249331	6.05093007658664	0.00507588783503468	0.985664503873962	0.99691465847822
Merged-chr15-102234713-2	chr15	102234213	102235213	+	771.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011244)	TTS (NM_011244)	-2778.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	4.05194720499091	4.14736707233264	4.34274929067014	4.33557720172905	4.44286563508516	4.71991408904134	0.853626154442719	0.0661595180940833	0.335711744211031
Merged-chr7-132729073-2	chr7	132728573	132729573	+	743.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	47843.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.83055469871019	2.95449232110143	3.04228972647496	3.00955595128019	2.67824269854904	2.68094459496828	-0.708270584291573	0.342339856019312	0.731283521951228
Merged-chr7-19310239-5	chr7	19309680	19310680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-135.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	8.54525698218308	8.63395907814015	8.12606821942991	8.3382085659575	8.54882782507639	8.44189226563032	-0.0186237796523107	0.93706525276317	0.986037792257163
Merged-chr2-6731040-4	chr2	6730539	6731539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-9377.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.95385270907687	3.62179197893522	3.55201782257	3.52332787175494	3.56253352180468	3.6781224059318	-0.48340778737113	0.397820359450304	0.774593722474986
Merged-chr5-21210617-4	chr5	21210132	21211132	+	946.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	(CA)n|Simple_repeat|Simple_repeat	24365.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.63624919523866	4.77938053578522	4.96226332375432	4.40921498004016	4.24524022540023	4.67420345508801	-0.853555861842096	0.0520475753673849	0.291438194829101
Merged-chr11-103957090-2	chr11	103956590	103957590	+	905.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3034.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	2.8364718711119	2.85966651680394	3.1231441733383	3.04763388662116	2.88703214119966	3.02369142908589	0.216216898727922	0.754609862696852	0.939008487312488
Merged-chr2-3512931-4	chr2	3512451	3513451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	-114.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	8.24891137606577	8.62766356913522	8.17695269511167	8.12518401504197	8.45654664285745	7.98525834034966	-0.223774475272775	0.379394337010845	0.761846755170461
Merged-chr6-87533808-3	chr6	87533299	87534299	+	715.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	-540.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.53317510680547	7.43572601481958	7.53180785851746	7.56596822049574	7.87218882944344	7.77021526520723	0.356102801527317	0.119892660641643	0.462900714298801
Merged-chr1-93411116-3	chr1	93410543	93411543	+	884.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357556, intron 24 of 27)	intron (NM_001357556, intron 24 of 27)	34658.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	3.09571855974658	3.23673255539111	3.12070533409218	3.12679181426408	3.04207511675602	3.41351404959967	0.175956468911225	0.788310260310981	0.948908830222811
Merged-chr11-116020235-4	chr11	116019692	116020692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4312.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	5.27240133356409	4.94151697249744	4.65865740353163	4.52858793616606	4.47328431350946	4.72631035656093	-0.963088795075613	0.0255399768851407	0.1894562179423
Merged-chr17-33637901-8	chr17	33637463	33638463	+	876.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028279)	promoter-TSS (NR_028279)	-93.0	NM_001002842	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	5.78755601466584	5.60760478425398	5.87690053636252	6.33270419787597	6.03234358687992	6.49438917889151	0.924686686221699	0.00327669566340323	0.0450061559525348
Merged-chr13-42576107-6	chr13	42575537	42576537	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104762.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.86424319756019	2.93842244896451	2.99801923355061	3.03450337843514	3.03958422072405	2.82356983801537	0.202026619656623	0.770362490446913	0.943392092118189
Merged-chr10-51527984-6	chr10	51527468	51528468	+	959.513916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	37070.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	8.0269120891195	8.26649772443691	7.74008530437179	8.19141625599397	8.5758595669487	7.85893921333528	0.303734378803336	0.27959159303443	0.677290671437563
Merged-chr11-87986393-4	chr11	87985909	87986909	+	735.087524	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168472, exon 1 of 3)	5' UTR (NM_001168472, exon 1 of 3)	176.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	5.12510061431343	5.0174685347402	4.82763957425802	5.50120064335958	4.91422751441894	4.89524954996536	0.287516446186071	0.489266839068671	0.829548356533255
Merged-chr18-75504988-2	chr18	75504490	75505490	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-9655.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.29441518664084	3.27416235829932	3.75271094197417	3.68081322134502	3.23834442104613	3.77422174878111	0.454470462700299	0.483234498910008	0.826100933952794
Merged-chr4-129785383-4	chr4	129784865	129785865	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35114.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.65955876820339	4.41543683634204	4.72960303835915	4.47859116074502	4.54420581276642	4.93387116669214	0.130564098918054	0.766442144968417	0.942467872936068
Merged-chr9-64446514-2	chr9	64446014	64447014	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	60888.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	2.898417557671	2.630119374958	2.92768949519504	2.73579110134473	2.61752747003793	2.94203769202918	-0.288998588116833	0.700941832084681	0.921065601246484
Merged-chr6-30035274-4	chr6	30034781	30035781	+	956.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-12707.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	2.7997639974836	2.94898364352235	3.12573997102801	2.96469017432049	2.80570268227977	3.14167869248137	0.0549853239700325	0.938025503987843	0.98625187415669
Merged-chr6-57851339-4	chr6	57850824	57851824	+	841.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6867.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	4.64904255273138	4.32076115364451	4.96933503960389	4.59225912580298	4.11175212248492	4.80067292115673	-0.337271407644254	0.501601044854084	0.835833270717604
Merged-chr3-100176200-4	chr3	100175706	100176706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104341, intron 3 of 13)	intron (NR_104341, intron 3 of 13)	13743.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	4.67420194970818	4.85730340310965	5.13072788873648	4.72520854560489	4.96535576085636	5.06669898657501	0.0747005168244563	0.854365206906221	0.965987623019113
Merged-chr9-108995431-4	chr9	108994931	108995931	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	3529.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	5.42284926120619	5.65512677581839	5.58165149445599	5.58975595948442	5.56838467775687	5.31100916880824	-0.0977960582914214	0.770563453898188	0.943392092118189
Merged-chr2-153276356-3	chr2	153275858	153276858	+	927.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-15058.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	4.2842150994323	4.37642745147047	4.21462079445674	4.16410292660522	4.16867703350435	4.09097438773426	-0.421249996776202	0.36227718374353	0.747810564820261
Merged-chr7-129301691-4	chr7	129301185	129302185	+	826.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	44591.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	2.79694863065773	3.17538985783071	3.17137043282364	2.86304385655748	2.74908222698834	3.34795450749794	-0.211894322669284	0.780722738477094	0.946078518476608
Merged-chr6-129469003-3	chr6	129468484	129469484	+	963.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132130, exon 3 of 6)	non-coding (NR_132130, exon 3 of 6)	3795.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	4.74375280778682	4.61127962794962	4.81682645193027	5.09756867999372	5.27078770766007	5.22778361441295	1.05108669251486	0.00536897691569103	0.0643071586585316
Merged-chr16-44988798-4	chr16	44988281	44989281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	45103.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	4.33172460172461	4.36344724315185	3.90653605353343	3.75332652884597	3.52901425029443	4.02816533691675	-1.36615429812328	0.0142028583444421	0.128060334361397
Merged-chr10-5824196-4	chr10	5823729	5824729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175374)	promoter-TSS (NM_175374)	-286.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	6.25808805720953	6.60812438612177	6.64916224538721	6.52437464847643	6.48228159466021	6.70783781797415	0.0911344160060399	0.745881830166686	0.936251303305737
Merged-chr10-98777904-1	chr10	98777404	98778404	+	545.0	f1_balb.idr	Intergenic	Intergenic	-136738.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.66504268447073	5.42884277683196	5.6449701657118	5.66555851723917	5.69033986720643	5.78402536585877	0.242708395951223	0.447242018747056	0.806316645191341
Merged-chr4-155564081-3	chr4	155563575	155564575	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	CpG	260.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	8.23411111644464	8.34766414623914	7.67210383070842	8.02902764155622	8.10389875415202	7.88111867292967	-0.162790287342513	0.534007980303858	0.852822080248808
Merged-chr5-3497863-4	chr5	3497337	3498337	+	886.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-45996.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.95541981420124	3.89360383089543	4.00723539283208	3.5378161533902	3.37082205982316	3.62938864636492	-1.53645083335244	0.00598636787670873	0.0696662515084168
Merged-chr17-34365250-2	chr17	34364751	34365751	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_079835, exon 7 of 9)	exon (NM_079835, exon 7 of 9)	10429.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	5.64131083101503	5.48866212293915	5.40212510600827	5.78746535348296	5.7502120637778	5.33529457856415	0.246507876273557	0.47293792932377	0.82059010808183
Merged-chr4-121016055-4	chr4	121015559	121016559	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	1188.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	6.33988406346423	6.10280065925592	6.34827805654358	6.61857046326939	6.29024459658988	5.86456041043202	0.0636189675642559	0.845573005572427	0.963834884892227
Merged-chr15-102065858-4	chr15	102065363	102066363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7910.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	1.97379334947219	2.01342956171791	2.17961401189992	1.85378231620272	1.87983953820894	2.06010098760839	-1.02244692031571	0.290749804613217	1
Merged-chr1-151595082-4	chr1	151594577	151595577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	23704.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.22795359293798	7.31981763898318	7.18622146309259	7.00666905715655	7.35218020801548	7.15771573566953	-0.0932084674676125	0.704384816039863	0.922392522355862
Merged-chr12-17783040-1	chr12	17782540	17783540	+	599.0	f0_balb.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	92231.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.98189913709401	3.33528717303939	3.3993218492818	3.3129894148987	3.34814447216103	3.46970385953705	0.506106723838145	0.433337464599423	0.797793107392544
Merged-chr10-8000150-3	chr10	7999668	8000668	+	893.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-44045.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.09557509918766	2.91516966083099	3.20642595573048	3.221332080942	2.86415225204337	3.48785369157301	0.574554722976817	0.41877469064677	0.788755230826602
Merged-chr13-47194917-3	chr13	47194407	47195407	+	812.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170643, intron 1 of 7)	intron (NM_001170643, intron 1 of 7)	904.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.99164611882368	6.3151994450844	6.26679093739737	5.75441018665085	5.92823050287789	5.71364204129037	-0.677103611724627	0.0282193736098744	0.200930826572859
Merged-chr1-36071384-4	chr1	36070881	36071881	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2981.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.35179028738137	7.11247771060221	7.04771269895465	7.17793599391978	6.8776044953692	6.81686618677827	-0.320768942730153	0.219916414544838	0.61423936831415
Merged-chr6-145302447-5	chr6	145301985	145302985	+	995.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	51933.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.22017910618927	7.20048832273688	7.33676408688581	7.59486505377087	7.96238276292982	7.73488027471456	0.771836393772422	0.00114468953023875	0.0200015385199718
Merged-chr16-84703355-4	chr16	84702841	84703841	+	837.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9682.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	2.87166753449287	2.6749986330861	2.8736522863507	2.9150547921676	2.8364461798111	2.62720088002135	-0.0308543344369132	0.967017763180766	0.992443230448091
Merged-chr1-182380834-4	chr1	182380327	182381327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28340.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	5.17532970367561	4.99808283681953	5.14401508191652	5.0936920799397	4.99643369277348	4.80696315713095	-0.271792411530389	0.469196507776945	0.818913936718213
Merged-chr15-102462077-3	chr15	102461570	102462570	+	619.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2900.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	4.17217753517958	3.95494697458142	4.33934491055591	4.42055695908159	4.12802212795047	4.23104204865332	0.29518368140374	0.542136880791165	0.857034750433211
Merged-chr18-23894446-4	chr18	23893929	23894929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162942)	TTS (NM_001162942)	-60259.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.2801693516859	5.80649239988554	6.20290493364166	6.18003975679531	6.27666047332291	6.13730004750099	0.159353394811646	0.603177594555468	0.882544198306255
Merged-chr4-59853337-4	chr4	59852795	59853795	+	854.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	47645.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.53231181285286	3.31652519326757	3.60682733037973	3.04726373013331	3.08931744539023	3.30949941075703	-1.40113254459724	0.030118995227299	0.209491617107472
Merged-chr10-61450902-2	chr10	61450402	61451402	+	976.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	1767.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	4.20482327421844	4.08342640660998	4.39840822532525	4.36686946690855	4.53248851618517	4.19705401716939	0.420821029740299	0.369504427589858	0.754199183923683
Merged-chr4-102665194-1	chr4	102664694	102665694	+	562.0	f0_balb.idr	Intergenic	Intergenic	75351.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.71654536783336	3.48567418757055	3.91556303397427	3.69300401938578	3.46716351028502	4.07131964441412	0.15587554131657	0.793857831425118	0.950531747588938
Merged-chr19-46058141-2	chr19	46057641	46058641	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346801, intron 1 of 13)	intron (NM_001346801, intron 1 of 13)	1602.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	2.81804947738556	2.98134665451139	2.86553671248986	2.94174724257814	2.89273277181262	3.11358686679891	0.427002300143221	0.538147356321198	0.855027269644122
Merged-chr3-59230594-2	chr3	59230094	59231094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-19712.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.9443498955922	5.06463916550645	5.25312547196191	5.02682126238654	5.10912342784995	5.63897705948161	0.386151727492181	0.331060376379729	0.722380198189226
Merged-chr10-117866914-4	chr10	117866461	117867461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20987.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.83497152055926	7.54306558622334	7.20361933752198	7.66993045753833	7.854962569195	7.33541124438171	0.122032029873461	0.665295427715837	0.907762144972922
Merged-chr8-106210947-4	chr8	106210447	106211447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007567)	promoter-TSS (NM_001007567)	-14.0	NR_152744	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	7.05441858573803	7.31239110974574	7.48439903451617	7.21589419905334	7.25744811389996	6.99859923844071	-0.181345269367185	0.479989196792121	0.824450336912929
Merged-chr3-94439324-2	chr3	94438824	94439824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2673.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	2.79808815622281	3.09369829050935	3.05096920195439	3.00223617928812	2.84085027648642	3.28821602554636	0.288627304352338	0.686235370157184	0.916610846457002
Merged-chr15-81836640-4	chr15	81836162	81837162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21664.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.92456355670961	8.00641296876798	7.76673593966599	8.03019493588928	8.02845996908268	7.57707093568341	-0.00418235557560914	0.986314246045796	0.997033990984076
Merged-chr2-164834643-4	chr2	164834094	164835094	+	823.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082974)	promoter-TSS (NM_001082974)	821.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	7.76599760591099	7.89094276301043	7.91963029937837	7.8049574035452	8.06181184581592	7.32576375113803	-0.116294608197555	0.665828010185091	0.907920503949149
Merged-chr16-77084872-4	chr16	77084370	77085370	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70801.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	5.25705456425194	5.2932997046474	5.15113439628966	5.39556699103618	5.42645197642851	5.55108904137427	0.423357389365811	0.212878071118127	0.605482203163822
Merged-chr8-25090579-4	chr8	25090078	25091078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	11233.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	7.55596255655238	7.40355199210675	7.3024512118213	7.33066055104885	7.42699218043507	7.62439465522046	0.0476012563780621	0.841691133245357	0.962988975342446
Merged-chr5-122614497-4	chr5	122613984	122614984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358917)	promoter-TSS (NM_001358917)	60.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	4.46229119140353	4.20964721631347	4.13579726705892	4.16570363063519	3.74959715981214	4.2956927423739	-0.556687010918783	0.283506825271559	0.681376161050487
Merged-chr8-18935247-3	chr8	18934765	18935765	+	906.9365230000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15606.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.08401748409738	3.7866786737447	3.71964632638113	3.65837359765898	3.54882711729004	3.56883231767045	-0.959901190313752	0.0846783525947276	0.385394912984962
Merged-chr1-52847795-4	chr1	52847308	52848308	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146108, intron 1 of 13)	MTC|LTR|ERVL-MaLR	2770.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	2.43157067153229	2.69770522453093	2.68016568612709	2.65919940462668	2.55872224441857	2.81352578410586	0.380895604594685	0.625993449178936	1
Merged-chr4-42965534-4	chr4	42965016	42966016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	3.81050859153304	3.44281659730341	3.71459368121043	4.49967536659069	4.2407121069191	4.0049922573654	1.85450475922163	0.000857787462672811	0.0159997263380586
Merged-chr10-79924075-7	chr10	79923616	79924616	+	943.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	RLTR12A|LTR|ERVK	-2927.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	5.51317436676329	5.37270050527941	5.7756285540345	5.57638774795889	5.63099644460825	5.76381081039641	0.192145280840821	0.563530160662994	0.865992481769395
Merged-chr6-29523610-4	chr6	29523100	29524100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3025.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	9.15679490395796	9.05146130832171	8.81296150545668	8.9080437857323	9.36058626517418	8.7849510974756	0.042606538934676	0.862807422163495	0.96809238390547
Merged-chr11-69998955-4	chr11	69998527	69999527	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291127, exon 3 of 4)	exon (NM_001291127, exon 3 of 4)	1565.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	5.22149673077923	5.3611625807676	5.28412965752504	5.47432157290589	5.62916158854357	5.83721881327824	0.68508007125994	0.0433649021892245	0.261623171502392
Merged-chr15-102406724-4	chr15	102406223	102407223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 1 of 5)	CpG-5406	407.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	7.62816564038372	6.74838831639678	7.0943654825927	7.44390569306587	6.66287897564206	6.94906588209053	-0.228071583789508	0.513974460212076	0.842918670363435
Merged-chr3-96197210-4	chr3	96196726	96197726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026975, exon 2 of 2)	exon (NM_026975, exon 2 of 2)	360.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	7.12572317096338	7.55816454687405	6.66936024996741	6.8784906315248	6.96423639302541	6.60266707190104	-0.531473797545796	0.0945050212981089	0.409774560300836
Merged-chr10-8850324-2	chr10	8849824	8850824	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	35746.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.20474257544401	4.79005548277685	5.33412607655573	5.07490523098677	4.77456705581242	4.57446404426276	-0.633444262896785	0.140258053301201	0.500561531163901
Merged-chr5-19951931-4	chr5	19951418	19952418	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	44400.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	5.6714633114471	5.73940127640861	5.70479689564265	5.82464960589989	5.86436389041877	5.47850316259743	0.0747964921705995	0.816402864569392	0.956664796338092
Merged-chr1-131384645-4	chr1	131384149	131385149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-105086.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	6.79672739583059	6.68413206809942	6.50440530333638	6.29056640987355	6.54944614846255	6.72939610668149	-0.227864833774507	0.416427211780923	0.787340667542254
Merged-chr1-151500972-4	chr1	151500479	151501479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011277)	promoter-TSS (NM_011277)	12.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	7.7133156331376	7.65016111956346	7.51826433894387	7.58583855605567	7.46844802609657	7.70607324834668	-0.0712518010897901	0.753872048088794	0.938570691167124
Merged-chr15-103339547-4	chr15	103339038	103340038	+	908.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	548.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	4.42084449899219	4.47399717458975	4.54957962998268	4.655230423648	4.71601748128243	4.73463335185054	0.542378594843913	0.187223864333191	0.572150848517562
Merged-chr18-23903071-4	chr18	23902570	23903570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51618.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	5.86136400094415	5.82771349040504	5.4628912565959	5.61369142589046	5.59503839450397	5.75267509346695	-0.168489302230034	0.607058799791087	0.884440198434949
Merged-chr2-143082456-2	chr2	143081956	143082956	+	875.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020595)	TTS (NM_020595)	4063.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	5.2454123767802	5.32032352665857	4.99768779623007	5.13774492091008	5.15829611854253	5.36243370499504	0.0216656250033964	0.952482131620288	0.989124260059756
Merged-chr4-146492583-2	chr4	146492083	146493083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-9417.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.83501697037905	4.18384405143379	3.74288403158957	4.07562969325938	3.8613379666382	4.20932402460713	0.313089543277524	0.560033359540069	0.865168019835518
Merged-chr5-43354084-2	chr5	43353584	43354584	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118730.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	3.61117278011291	3.47318162707412	3.36224924054473	3.56611134176308	3.20861257226571	3.19111321660448	-0.587374680732449	0.352833544844782	0.740329823404675
Merged-chr1-78894384-7	chr1	78893891	78894891	+	918.107117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	77480.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	4.83478801030557	4.91941075587551	4.59327658975165	4.44393910876185	4.68509632220352	4.89244196236903	-0.271797152973828	0.522353251446504	0.847587801886238
Merged-chr2-148531758-4	chr2	148531171	148532171	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88136.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.6488920024901	6.4081032046178	6.57702339476949	6.15894369106373	6.20896798943339	6.3911598393808	-0.485879970729969	0.0786093272392053	0.370338857486117
Merged-chr19-23085829-1	chr19	23085329	23086329	+	758.799988	f0_c57.idr	Intergenic	Intergenic	-55397.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.62323001940125	2.47319162229317	2.57130464931736	3.14419027257195	3.1833010321784	3.04124612982126	3.43992763128849	0.000122467937485157	0.00336647246193094
Merged-chr16-56064537-4	chr16	56064034	56065034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	(CAAAA)n|Simple_repeat|Simple_repeat	7004.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	5.54157921935021	5.70400273647316	5.82141769751545	5.68970798624037	5.99967662489926	5.43755179276754	0.105245792788431	0.760214928058307	0.940679065118234
Merged-chr2-70885867-4	chr2	70885361	70886361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-60381.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	5.39436043055577	5.37127533002835	5.29617912893894	5.64168469791457	5.74538644509706	5.48615107060147	0.532361474226809	0.106634281230933	0.435916169724877
Merged-chr9-99493466-4	chr9	99492977	99493977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	L1MD|LINE|L1	23056.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	6.66682676454615	6.64748213758601	6.37677989910702	6.54055689575264	6.99788431304873	6.97039663465393	0.432572298690661	0.128593961446338	0.479725368402892
Merged-chr8-13627777-4	chr8	13627239	13628239	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	49848.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.91228559349297	3.81388914951878	4.03699976670579	3.80644437903881	3.51796807061205	3.91924568261003	-0.548186088769909	0.313744920254514	0.708153731846944
Merged-chr4-55963525-3	chr4	55963006	55964006	+	695.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431031.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.82420620987051	4.11436637154103	4.36687543384923	3.89097758683435	3.7938504188878	4.09716766315387	-0.552026050223402	0.297249196465969	0.69386498175224
Merged-chr1-105742637-4	chr1	105742154	105743154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 24 of 28)	intron (NM_173187, intron 24 of 28)	-38069.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.93623484022401	5.04801142124051	5.10447418433702	4.95497091802005	5.17342066417151	5.26280272933912	0.225090564825712	0.54280475350287	0.857370348607164
Merged-chr4-125117277-2	chr4	125116777	125117777	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10604.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	6.5641642416247	6.89548288697615	6.95155624433716	6.78111169076901	6.86185482346876	6.56268957432741	-0.0950542131305233	0.728568984903031	0.930478966998914
Merged-chr17-29981772-2	chr17	29981272	29982272	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23267.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	2.04003039929016	2.02039575607003	2.10900324888413	2.25671087670685	2.41870785164573	2.44866018233946	2.56357822482312	0.00862860792913765	1
Merged-chr9-32137936-3	chr9	32137437	32138437	+	616.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	21801.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	3.29773255989153	3.3044396019272	3.45452478748536	3.60164609101303	3.56483435382926	3.47055150731576	0.757507394223619	0.194021556723379	0.581296310830689
Merged-chr17-26583038-1	chr17	26582538	26583538	+	580.0	f1_balb.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	21526.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.22501588485057	2.2579817696836	2.40225073267657	2.28250307321413	2.02323649352587	2.2844089953924	-0.669902492028587	0.456684954200345	1
Merged-chr11-115536342-4	chr11	115535852	115536852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133354)	promoter-TSS (NM_133354)	-122.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	7.67045078829703	7.22507269597688	7.34081447816855	7.81692018711228	7.24702391934023	7.62148490830307	0.221457343945554	0.424998973576561	0.792848465017231
Merged-chr19-32904436-2	chr19	32903936	32904936	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146859.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.58318636857153	4.43590300808983	4.83835892653055	4.41807100815506	4.47330220766688	4.39642459970203	-0.462257754278894	0.291410183103549	0.689051679650718
Merged-chr5-28317013-4	chr5	28316518	28317518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028234)	promoter-TSS (NM_028234)	-171.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	8.09355531711561	8.31477079818141	8.3455857753839	8.39914399492051	8.02916557391596	8.38993905947992	0.0361119577195395	0.876130405492603	0.971185372218754
Merged-chr14-66295935-4	chr14	66295443	66296443	+	894.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038077, intron 2 of 2)	MTD|LTR|ERVL-MaLR	-1082.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	3.38786000795572	3.15303597615899	3.36610369836557	3.53875401008024	3.35300062096768	3.64877083904972	0.798030190417643	0.191202652789046	0.577822466760773
Merged-chr19-29500111-2	chr19	29499611	29500611	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21876.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.30070555032099	4.66820745354986	4.48941384665721	4.95793615909098	4.48607733489482	4.90602812856559	0.699893547207911	0.120376802488067	0.463973009661092
Merged-chr13-5801134-3	chr13	5800719	5801719	+	779.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56873.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.97414929848262	3.76542603186889	3.87016892584551	3.96076585380943	3.8242342229269	3.78483189857492	-0.0402328465161567	0.938058376057541	0.986252070392407
Merged-chr4-107935429-4	chr4	107934922	107935922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-11833.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	5.35773237878373	5.13153225629538	5.29455401526369	5.05903572779549	5.01101046019241	4.98973759619715	-0.50226664828925	0.16383468177833	0.537798828885102
Merged-chr2-29650272-3	chr2	29649779	29650779	+	861.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	L2a|LINE|L2	30559.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.1514753642637	5.38549663554174	4.97185984777484	4.99620099159904	5.16948863881689	5.27675809013239	-0.0877499156152172	0.815305006129425	0.956370078970016
Merged-chr15-63969529-1	chr15	63969029	63970029	+	637.0	f0_balb.idr	intron (NM_001360038, intron 2 of 11)	URR1B|DNA|hAT-Charlie	28537.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.89273818179351	3.79651906687696	3.77668785561918	3.72318067928213	3.94130661937703	4.13244907028276	0.350496239957189	0.505192018683084	0.838038626207776
Merged-chr10-96625788-3	chr10	96625273	96626273	+	653.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8772.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	2.16945483909475	2.20675943613457	2.37901848158379	2.16378972155974	2.22229295003911	2.19500459805597	-0.392082695160834	0.651684271246943	1
Merged-chr8-69037917-4	chr8	69037410	69038410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50826.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.27021121270266	5.47085917505743	5.548581022904	5.19423943293587	5.50795480194246	5.44208260807948	-0.0737959951475193	0.832443948756576	0.960616839788396
Merged-chr11-44539893-2	chr11	44539457	44540457	+	726.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	MT2B|LTR|ERVL	20580.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.03654687651353	6.12267545428254	6.1274923321806	6.51258143165274	6.76763703604174	6.31549312758874	0.763074745677075	0.00810142352693049	0.0868465922222149
Merged-chr2-126515219-4	chr2	126514713	126515713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-15366.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.2457915357401	3.25863148938087	3.09454153990599	3.10183623399427	2.96844354697804	3.16715186986499	-0.568192151296754	0.383837976387575	0.765036051179388
Merged-chr13-45966197-3	chr13	45965720	45966720	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.52956902427219	6.41761860828044	5.92413934721482	6.42794227369616	6.167545417837	5.93448259350226	-0.21493421201556	0.51334438489051	0.842549813251827
Merged-chr3-103851088-4	chr3	103850536	103851536	+	946.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-8759.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.91945329696426	4.56718926753476	4.59297640452025	4.98468916371554	4.93282268060054	4.78535313523715	0.447683026518217	0.274035505360274	0.671494723621571
Merged-chr6-16885923-2	chr6	16885434	16886434	+	635.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	12507.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.15228257698695	4.52504976561205	5.09898385269916	5.28762214092865	5.36318833834313	5.35294768758284	0.792607362316912	0.0508376302279539	0.287175664358967
Merged-chr19-53142622-4	chr19	53142127	53143127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277100)	promoter-TSS (NM_001277100)	-129.0	NM_001277100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	6.33392106519978	6.43237475431406	6.68115139167571	6.22620164283339	6.29676242332435	6.38877294886906	-0.293553564260776	0.293694510857895	0.690424156263798
Merged-chr8-22809720-2	chr8	22809220	22810220	+	854.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4066.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	5.14388004624188	5.05330217683883	5.44914313860867	5.29812024014943	5.39078571349567	5.27405623431731	0.226814860056616	0.527175076853293	0.84985341072961
Merged-chr2-120563803-4	chr2	120563277	120564277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	82.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	8.13469242102877	7.91446489284848	7.87172434798979	8.27108316754247	8.56325498826962	8.24033318641966	0.54802962555898	0.0167070464900035	0.14337457965555
Merged-chr5-134613893-3	chr5	134613356	134614356	+	711.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	1169.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	3.68723074745412	3.42383464154251	3.79294203239834	3.45923589202388	3.39819469481292	3.2702719512675	-0.943573280454449	0.119362735305169	0.461851923064695
Merged-chr17-55754577-4	chr17	55754077	55755077	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	4593.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	5.88809114384331	5.89696809710866	6.60493631997231	5.96201240862525	5.96857997408302	6.28232544338438	-0.154181532087113	0.661447479960745	0.90639160796631
Merged-chr8-83694720-2	chr8	83694203	83695203	+	806.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199593)	promoter-TSS (NM_001199593)	-642.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.69022498344328	5.69879501011372	6.13958185323434	5.85524604884676	6.23867307784677	6.13857731621846	0.425137737205929	0.194160409942817	0.581328465709111
Merged-chr5-118466563-4	chr5	118466054	118467054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-94165.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.88475718614198	4.05206087679438	3.63820024590999	3.64485104104927	3.70034834036339	3.6541002971834	-0.686295478660569	0.212663597544551	0.605216246818764
Merged-chr15-59017633-3	chr15	59017135	59018135	+	794.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	MLT1A0|LTR|ERVL-MaLR	64391.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.76942262796662	3.81451213867778	3.61794146858134	3.63597686660705	3.31209185014235	3.40392188434055	-1.0170042153155	0.0825554941041206	0.380043018169608
Merged-chr5-135010726-4	chr5	135010202	135011202	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145215, intron 2 of 5)	intron (NM_145215, intron 2 of 5)	1246.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	6.69024192041913	6.34424822701927	6.67233556704952	7.37290846770866	7.55098579450874	6.69777381224159	1.05950248026783	0.00077420818448564	0.0148064036655531
Merged-chr16-17182349-4	chr16	17181841	17182841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	19151.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	7.05313028760133	6.87392129349535	7.08253584782023	7.01790942825522	7.02155380339793	7.07690831284623	0.0532348921817575	0.825716106335841	0.958900584443939
Merged-chr19-18714341-2	chr19	18713841	18714841	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	intron (NM_177640, intron 1 of 1)	1105.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	2.14848461964711	2.21167497063588	1.98324935566947	2.20307005333829	2.05013965520405	2.33036684628535	0.542545580058655	0.563206502233453	1
Merged-chr15-67991692-2	chr15	67991192	67992192	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	267164.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.74942925356957	2.95664471990945	3.27895491270147	2.66887208079344	2.83868657609865	2.91078047944418	-0.957499163734789	0.205222649784354	0.595845110560745
Merged-chr7-126777760-2	chr7	126777260	126778260	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026875, intron 1 of 4)	intron (NM_026875, intron 1 of 4)	785.0	NM_025347	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	4.51312319054241	4.61485128241215	4.78614095238638	4.70331402730759	4.80978816121779	4.88704968687591	0.385625540257298	0.340951625759849	0.730599337545402
Merged-chr14-26638896-4	chr14	26638401	26639401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	767.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	8.5753647638221	8.86593678014515	8.57589359455094	8.58808672805519	8.94572192028098	8.75751387408157	0.126781643846018	0.572512025650535	0.869840399318717
Merged-chr14-30217201-1	chr14	30216701	30217701	+	540.0	f0_c57.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136285.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	3.9655610262596	4.01236854033352	3.85819234522116	3.78912257712649	3.75760394102161	4.11738978753271	-0.194079194830777	0.709626191201455	0.92401439884764
Merged-chr12-85602468-2	chr12	85601968	85602968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	2450.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.00290339002549	6.91026914697897	6.68377582922526	6.8895533152805	7.02909943748056	6.70937508651267	0.0174892570863458	0.94701877305625	0.988007649185823
Merged-chr11-118155113-2	chr11	118154613	118155613	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-25894.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	2.84519148308718	2.9441217933343	2.92665438543517	2.58771398153913	2.57258638326052	2.49043075273045	-2.02817557045359	0.0122343581414823	0.11579984896331
Merged-chr8-106964860-1	chr8	106964360	106965360	+	670.333313	f0_balb.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	29110.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	3.15979183674214	3.26840785938161	3.52400308990349	3.07116752553315	3.30241705272175	2.971315147874	-0.788878089945929	0.251210078403318	0.648731936769727
Merged-chr1-106932164-4	chr1	106931653	106932653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	4.9014023337849	4.86838202193602	5.27384713026082	4.93734021361964	4.97832344289498	5.33620885241534	0.150077610948882	0.705616040735659	0.922834459892351
Merged-chr10-111164689-4	chr10	111164188	111165188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-114.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	8.48130402980836	8.60734232027984	8.10404482366314	8.25249783359821	8.28359631001276	8.04261459005449	-0.310320859553895	0.193507702552267	0.580668913858102
Merged-chr11-79520904-4	chr11	79520373	79521373	+	981.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2889.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	7.06472862746136	6.95718367284353	6.65833019531739	7.14414370563379	7.2657811175526	7.34145252668339	0.50751002378436	0.047879365057008	0.27737563236535
Merged-chr8-60897421-1	chr8	60896921	60897921	+	650.5	f0_balb.idr	intron (NM_028299, intron 4 of 7)	LTR67B|LTR|ERVL	7028.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	2.2556433265499	2.46831032677716	2.49756954347549	2.43508749066775	2.26774612277318	2.63267270070993	0.239784688101312	0.776944309215	1
Merged-chr9-116161148-4	chr9	116160630	116161630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	14233.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.93767372507326	5.92466031561405	5.96850068812567	6.03425429635011	5.9582116172442	5.93533026283235	0.0619413085872698	0.830986282644559	0.960370002015736
Merged-chr18-55197418-4	chr18	55196915	55197915	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204824.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.40902818907567	4.36327344900516	4.48747437132001	4.57124239472891	4.58466547572022	4.55425047894151	0.387515432002247	0.358209693022	0.744602774931622
Merged-chr4-132573928-3	chr4	132573464	132574464	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	9897.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.78047187220977	7.57274835554171	7.09014663739503	7.41325037257948	7.57258960254381	6.54282032753267	-0.376942429567495	0.28494774887157	0.682535905581946
Merged-chr4-22381927-3	chr4	22381429	22382429	+	736.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 3 of 8)	intron (NM_172988, intron 3 of 8)	24386.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	3.39846747201271	3.48741459259442	3.62589610043294	3.48609825117791	3.5502932480731	4.06390621548555	0.737220315927897	0.219739178043861	0.614074140274511
Merged-chr17-27038447-4	chr17	27037947	27038947	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9188.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	4.21243154291673	4.3133207907941	4.6111130624328	7.10973679251964	7.09811731847231	6.37982893612665	5.45141516438613	1.46051159994348e-29	8.10174994720646e-26
Merged-chr1-170901332-2	chr1	170900832	170901832	+	814.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	11609.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	5.13218509972199	5.24792123519169	5.18086124052584	5.34137923630356	5.50749583975761	5.24538859996942	0.380283007328987	0.275678304238085	0.673222482990106
Merged-chr10-81606212-4	chr10	81605715	81606715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030677)	promoter-TSS (NR_030677)	-93.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	6.55278928987458	6.85870597138549	6.93916901683332	6.96403301518679	7.26440079866508	6.89868380230409	0.417589118682302	0.125805975687944	0.474483891988143
Merged-chr19-3926546-2	chr19	3926046	3927046	+	879.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	3170.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	4.13970484083621	4.25009273129093	4.37992456308182	4.09492569491762	4.34190358005095	4.40475009691051	0.0850002410754742	0.855329814540686	0.966144526071856
Merged-chr5-38516991-2	chr5	38516491	38517491	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14839.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	2.26085070950932	2.29921438390154	2.54304721792268	2.25764347786765	2.16043584673904	2.4950938043345	-0.406945606076369	0.64031859832528	1
Merged-chr4-107367933-7	chr4	107367415	107368415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028355, exon 1 of 18)	5' UTR (NM_028355, exon 1 of 18)	131.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	5.53287982203232	5.71166269028217	5.74886006165188	5.71678298134551	5.50451187410245	5.681828175589	-0.059971523609267	0.852061318030748	0.96531854415899
Merged-chr16-55934805-4	chr16	55934273	55935273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028815)	promoter-TSS (NM_028815)	75.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	5.85621781068837	5.83230176188896	5.40450568787766	5.83181555759287	5.75173211489384	5.50129448274827	-0.0310341346492774	0.927330951358009	0.983584626679457
Merged-chr1-131511274-4	chr1	131510759	131511759	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	16102.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	3.68055730903638	3.16868858967019	3.31417445172175	3.25475264219018	3.1878747268992	3.44216569861686	-0.449078203019231	0.489536981328717	0.829739482756292
Merged-chr8-105825696-4	chr8	105825204	105826204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 2 of 13)	intron (NM_145824, intron 2 of 13)	1646.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	5.45421527108648	4.96214514006126	5.00065611479647	5.02707474169639	5.12059357468533	4.91524671119601	-0.285323604599937	0.4703714365465	0.819495618343931
Merged-chr15-96286798-4	chr15	96286282	96287282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175251)	promoter-TSS (NM_175251)	-740.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	7.46166460871729	7.55530284266188	7.72563928872951	7.80505934143474	7.71806432372005	7.82374782180545	0.290687121017955	0.193710737365725	0.581008752695408
Merged-chr9-3403308-4	chr9	3402820	3403820	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-765.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	5.82855534752662	6.24866958760616	6.25741329135001	6.51665324883053	6.36931411458055	6.41280377252544	0.516840237778549	0.0818680161312304	0.37857474081624
Merged-chr3-115643089-5	chr3	115642530	115643530	+	900.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	72025.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.19424354938776	5.19405990454582	4.98550578685237	4.52443377516933	4.5152664579255	4.48523384962531	-1.42907974109722	0.00034305607262862	0.00777369544969559
Merged-chr3-59130570-6	chr3	59130113	59131113	+	891.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001287124, exon 1 of 2)	5' UTR (NM_001287124, exon 1 of 2)	149.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	5.94108948665966	6.09827649121744	5.55954483954218	6.13381294029797	6.36956449899255	5.56047792956748	0.315416047654629	0.396392149524877	0.773649472888747
Merged-chr6-53462099-4	chr6	53461647	53462647	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-111227.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.92902456471867	5.32669330453156	5.4214237607437	5.02439895091524	5.10598525448604	5.48343206795824	-0.054044289553524	0.890578138036206	0.97453903646658
Merged-chr7-30090889-2	chr7	30090389	30091389	+	895.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-379.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	5.55043407606514	5.4343969419397	5.82657409632117	5.48831802184886	6.03366963738761	5.63237286168195	0.270191729528621	0.447619044247777	0.806548958484392
Merged-chr12-112761434-4	chr12	112760935	112761935	+	832.270813	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	780.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	6.85720213435409	7.23867027481012	7.16853944616325	7.59846082405188	7.59230958933195	7.1110187108368	0.540665483487624	0.0470334241826853	0.274586569916063
Merged-chr13-93301813-2	chr13	93301313	93302313	+	784.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1944.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	6.61484043247865	7.03029941951028	6.91843327539476	6.63394886586949	7.1496020181499	7.0170137992507	0.137387710710468	0.633174495664623	0.895945572329466
Merged-chr5-104980710-2	chr5	104980210	104981210	+	617.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	2007.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	5.42655387731434	5.94396876076444	5.96669223453307	5.87434151697958	5.96031727001272	5.98248554562636	0.250700963484203	0.451491546306427	0.809090898196615
Merged-chr11-22990525-4	chr11	22990024	22991024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009837)	promoter-TSS (NM_009837)	-69.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	7.45109863689348	7.70273762310831	7.10230089390929	7.32848116856286	7.32403755551674	6.81769148919608	-0.389037260651009	0.180981710893655	0.563208452681188
Merged-chr2-26974730-2	chr2	26974230	26975230	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	1314.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	6.22022969730398	5.75104919981768	5.59761543904471	6.1517062583243	6.11209127872647	5.90923948904774	0.294146606343247	0.383186273833205	0.764608236765307
Merged-chr1-64343442-4	chr1	64342919	64343919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-189385.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.34747821390161	4.53905277922529	4.21414715317047	4.25114082704384	4.23205659523691	4.5429014717328	-0.10784183354152	0.816023615824163	0.956592281500902
Merged-chr11-117112425-2	chr11	117111925	117112925	+	991.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	2.70879492762661	2.45087394676988	2.74121304503903	2.71751754608057	2.54990878874667	3.09943887329207	0.865288785265239	0.283813896035425	0.68148750934452
Merged-chr19-6365121-2	chr19	6364621	6365621	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 1 of 11)	intron (NM_001360393, intron 1 of 11)	1431.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	5.99512147784147	5.94797348836698	5.66430466103702	5.78448001618222	6.2344839528021	5.83625760750824	0.16557790239194	0.615328658807165	0.887891564068787
Merged-chr7-27232974-4	chr7	27232478	27233478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-35.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	6.48594820272319	6.5410148421668	6.02317166663627	6.24757114304293	6.26186618194452	6.13032776972506	-0.27479547247819	0.360837230766548	0.746938274913623
Merged-chr3-98142910-2	chr3	98142410	98143410	+	568.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010928, exon 31 of 34)	exon (NM_010928, exon 31 of 34)	-17724.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	2.41367372030624	2.37884533155166	2.60261946710146	2.47641980945941	2.30649577629809	2.67585405506356	0.148783313752977	0.856707566490688	1
Merged-chr17-24743022-2	chr17	24742522	24743522	+	713.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346668)	TTS (NM_001346668)	6429.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	3.95719614098379	3.93095766306443	3.84832264965862	4.29922605968539	3.84010642257126	4.46080982886759	0.867619046335931	0.102247948181779	0.426399634019287
Merged-chr17-21423199-4	chr17	21422706	21423706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-21.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	4.45008406036945	4.64967335969402	4.63720485131551	4.58148622735914	4.75714054957006	4.53877654926236	0.139329410756731	0.740252031621125	0.934501571762959
Merged-chr7-30308675-4	chr7	30308180	30309180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198027)	promoter-TSS (NM_198027)	-73.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	6.14745955249872	6.48387607690569	6.50112981148674	6.04419156694947	5.95658506958493	6.19193454768695	-0.548999336253845	0.0632842933977046	0.32763560758065
Merged-chr5-146949530-2	chr5	146949041	146950041	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025652, intron 1 of 8)	B1_Mus2|SINE|Alu	884.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	4.2851054157461	4.23964698709886	4.04323275528576	4.56894489497289	4.25455182363063	4.11450960933535	0.350726112764899	0.468606198977252	0.818673566064062
Merged-chr5-44199407-2	chr5	44198907	44199907	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 3 of 13)	intron (NM_173764, intron 3 of 13)	27199.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	2.7759472287094	2.5354887706447	2.67908110385069	2.88997984444226	2.52801452110401	2.8766066032278	0.552544096778606	0.478687150092951	0.823852002156652
Merged-chr16-92700226-4	chr16	92699726	92700726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2897.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.85725171826076	4.56072475628697	4.52166941583236	4.65601007737823	4.67479061321602	4.8286799651338	0.12818086667776	0.759182034415419	0.940311236380535
Merged-chr9-20888829-2	chr9	20888329	20889329	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145610, intron 2 of 10)	RSINE1|SINE|B4	654.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	6.95175230516808	7.09743560055248	6.84510138927311	7.14220925101751	7.32762892241809	6.9036625564375	0.260586653552572	0.316943801935219	0.710861744829394
Merged-chr6-128856431-4	chr6	128855938	128856938	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	RMER17C-int|LTR|ERVK	-30123.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.12472719992595	4.04193532468655	4.25660181853476	4.03850129352443	3.58175151556567	4.10418406011277	-0.654621408392091	0.222791120008219	0.617727541274371
Merged-chr14-120479509-4	chr14	120479003	120480003	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1042.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	6.01323088451931	6.07618226169442	5.66901586887194	5.46301384659022	5.2713013152575	5.67731234541304	-0.870928740822337	0.00995269591986562	0.100114110505341
Merged-chr4-12089364-4	chr4	12088843	12089843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356563)	promoter-TSS (NM_001356563)	-27.0	NM_001356563	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	5.93625828293716	5.80875222095125	5.20471028098955	5.63538908625298	5.49426325089663	5.40932105075361	-0.33974235219979	0.359485036404179	0.745712776952506
Merged-chr6-120151899-4	chr6	120151408	120152408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-41915.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.2109655027345	6.18433289868055	5.76581701132655	5.70091367633248	5.60263609428263	5.57274781693697	-0.807164894992311	0.0116835225271216	0.11217209569859
Merged-chr5-99328516-3	chr5	99328011	99329011	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	-75584.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.35046367988666	5.52953779977578	5.62492448343118	4.96840852497685	5.11353144123324	5.26300431847177	-0.77267157876635	0.029489470863632	0.206557002204535
Merged-chr7-88242759-4	chr7	88242266	88243266	+	797.987488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35319.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.90363078164915	7.03909598179396	6.99299306294334	7.07076678066549	7.320071383955	7.02388403663524	0.263287721187439	0.288808854378276	0.686174608963154
Merged-chr13-81136173-4	chr13	81135668	81136668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172094.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.98240646667819	8.17736187494684	7.87361817065212	7.9346254388368	8.26571876236343	7.86371579898836	0.0276088022206116	0.908393707146635	0.979259582109985
Merged-chr5-143473863-2	chr5	143473363	143474363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 3 of 14)	B4A|SINE|B4	9370.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	3.20673870496848	2.86093441410555	3.06311322965378	3.08199592114336	2.78338656440356	2.76388469196145	-0.800510038166513	0.278338891823968	0.675613258777385
Merged-chr12-99480564-4	chr12	99480095	99481095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30521.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.21853916661898	4.26581313169546	4.63339257977356	4.43609116937276	4.23532382829716	4.38086984639809	-0.0642859686036435	0.889745500021155	0.974310314607431
Merged-chr17-34981976-4	chr17	34981479	34982479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030597)	promoter-TSS (NM_030597)	125.0	NM_001204274	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	8.59303914894863	8.55395101635524	8.30279807623327	8.3494995369136	8.56219484073938	8.13097298139682	-0.176590595814969	0.446541983318065	0.805986318693516
Merged-chr3-88664306-4	chr3	88663791	88664791	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-11149.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	4.19625992256996	3.85447900485037	3.85123996415089	3.51681605826441	3.37835628642901	3.42067366300062	-1.90439275824547	0.00113314346655811	0.0198463684540497
Merged-chr11-86759276-2	chr11	86758776	86759776	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1709.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	6.8112082207566	7.04823068342506	6.75017018658632	6.3243804477982	6.75282053069513	6.61384721462108	-0.470684169012015	0.0924062445741957	0.40495806596775
Merged-chr7-110787464-3	chr7	110786952	110787952	+	796.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 2 of 14)	ORR1D1|LTR|ERVL-MaLR	14848.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	4.32758380519518	4.004242288988	4.12895192278533	3.47111525447547	3.72400847356794	3.75477965643888	-1.59975540800225	0.00377651784707138	0.049839254087092
Merged-chr12-5268130-5	chr12	5267560	5268560	+	820.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	107622.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	4.62024162964632	4.9579327089318	5.10547970137477	5.48902020680449	5.46960014551574	5.5846631824262	1.25239885185682	0.000816873506283453	0.0153898516914862
Merged-chr16-55835976-4	chr16	55835493	55836493	+	962.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	2648.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.96827454650952	2.99042772500759	3.32397226032512	3.18819520371798	2.98997219630389	3.39417205042337	0.415814125469049	0.542110732219031	0.857034750433211
Merged-chr5-20840077-3	chr5	20839597	20840597	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	42027.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.60109298601165	3.62703294323119	3.42385835295737	3.3269623688725	3.60142508527774	3.75975600071831	0.0471174436053642	0.936687136463139	0.986037792257163
Merged-chr13-56004005-4	chr13	56003528	56004528	+	854.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131522.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	4.67404532682249	4.90282691484607	4.20373108402762	4.41096692107014	4.17421273363148	4.11793290221049	-0.998280096901676	0.0432354517420554	0.261069337340562
Merged-chr15-53409401-4	chr15	53408909	53409909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63226.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.05350145077892	5.39449606343047	4.83675564602266	4.74714489873595	4.91383531429382	5.01580199416979	-0.500581633189842	0.215494935189396	0.608899282194137
Merged-chr17-78245089-4	chr17	78244593	78245593	+	932.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	44845.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.18227518823472	5.28287809479743	5.0504863535685	4.96811670140605	5.17503593282209	4.96933395854027	-0.275387504552547	0.45576033497814	0.811115753793496
Merged-chr16-76407721-2	chr16	76407221	76408221	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33894.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.28986166676074	5.40372528570237	5.11271722130617	5.87560707360342	5.82136567931528	5.38925239640898	0.834004550532355	0.0189409072574223	0.155780864987209
Merged-chr16-56063112-2	chr16	56062612	56063612	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	5582.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	4.18131878582187	4.35590451961186	4.30322046631848	4.54955221294859	4.41258056115027	4.69381695907825	0.691575558237163	0.120211816310322	0.463683701629394
Merged-chr12-85990337-2	chr12	85989837	85990837	+	982.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	88704.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	4.15759228221557	4.42422497814615	4.368947094903	4.60232846490369	4.37641033535312	4.34749328662825	0.328716021989778	0.467825447669234	0.81815434317961
Merged-chr15-53134970-2	chr15	53134470	53135470	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	(TCTA)n|Simple_repeat|Simple_repeat	211213.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.13406057496049	4.12978329750469	4.42040108296254	3.70487177306717	3.83091619530739	4.01631224903778	-1.12195851146484	0.0288647488717248	0.203834169915852
Merged-chr2-167324329-1	chr2	167323829	167324829	+	553.0	f1_balb.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	24849.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.24795845346652	3.39473218114895	3.64258119396932	3.4793895807183	3.34390072481646	3.45370020551247	-0.024054704653045	0.968259919204367	0.992742019778661
Merged-chr6-142715636-3	chr6	142715148	142716148	+	783.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13374.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	4.51179645948093	4.32079865537771	4.89992932736862	4.47402764291759	4.48162760307694	4.72106048893418	-0.0727422189416234	0.872932819142814	0.970349288189719
Merged-chr6-54075665-4	chr6	54075176	54076176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	35744.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.37613998876246	5.48255431892391	5.35594447304064	5.5521052444474	5.68828133476874	5.41985619671828	0.30198782989385	0.363855960519993	0.74933829766087
Merged-chr16-49700088-4	chr16	49699583	49700583	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028680, intron 1 of 10)	intron (NM_028680, intron 1 of 10)	789.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	5.31738319896364	5.21729460168215	5.37692935238814	4.90646128948069	5.17183719621603	5.12647222648645	-0.461476027912446	0.201547350157843	0.591047651513792
Merged-chr4-34614904-4	chr4	34614409	34615409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015824)	promoter-TSS (NM_015824)	33.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	6.72792074822238	6.96278180042795	6.9710437253114	6.99284126135925	6.7954256708152	6.6865035831615	-0.0844137121325088	0.745915066851846	0.936251303305737
Merged-chr2-32757723-4	chr2	32757268	32758268	+	911.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290563, intron 14 of 14)	intron (NM_001290563, intron 14 of 14)	534.0	NM_152800	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	5.80793754105953	5.71317548185703	5.76410317088926	5.65838829792007	5.54410261823983	5.29815607878729	-0.451685361105194	0.16657894781644	0.542024344100504
Merged-chr10-40087843-4	chr10	40087325	40088325	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	L1MC3|LINE|L1	54429.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.92488567955856	3.9773520188553	4.24563854671004	4.23343256038575	3.96865615604284	4.43503139874314	0.474499365817767	0.347374807553869	0.735497468013591
Merged-chr12-99306222-4	chr12	99305724	99306724	+	728.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	-143416.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	3.61690646094214	3.50129047293769	3.43005117511653	3.17396232403458	3.2904979909757	3.08114119563914	-1.31383907041752	0.0406735534820132	0.251478573844689
Merged-chr1-171232580-2	chr1	171232080	171233080	+	774.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	B1_Mus1|SINE|Alu	1769.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	7.56510679413745	7.90143750042624	7.73063251105713	7.87702346811351	8.27984062084199	7.30625168321514	0.218443834215891	0.472616422311593	0.820550293768681
Merged-chr2-165852683-4	chr2	165852211	165853211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252584, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	5462.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.98650524426892	6.75898334809337	6.68233227643441	6.86407591681424	6.99429566686507	6.65710814252144	0.0524834855358741	0.843896967811689	0.963679834808661
Merged-chr5-140620901-2	chr5	140620401	140621401	+	873.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175274, exon 14 of 14)	3' UTR (NM_175274, exon 14 of 14)	13560.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.44463964091032	3.16283590003157	3.63871323115045	3.34457735363482	2.95416666068638	3.23164412422781	-0.969100361079126	0.152277216297564	0.520263755512759
Merged-chr1-86041043-4	chr1	86040548	86041548	+	803.829163	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-4815.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	3.44469277251779	3.49946753787025	3.63456084541323	3.65177842095289	3.75038437675298	3.70452502051804	0.635758025019081	0.250358888763491	0.647692456975605
Merged-chr10-128094813-4	chr10	128094314	128095314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	2031.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.00456729425595	5.58220087250277	5.75265398183731	5.97997382358476	6.01057229202455	5.86608323907252	0.289935493325968	0.360982463814796	0.746938274913623
Merged-chr15-102407333-2	chr15	102406833	102407833	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 1 of 5)	PB1D7|SINE|Alu	1017.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	4.26470819790999	4.04498238389218	4.63457492995884	4.37917356603098	4.38181772325337	4.46811165426557	0.216715105169886	0.649376675506297	0.902160587683553
Merged-chr13-106812760-2	chr13	106812260	106813260	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	124198.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	5.60293437456651	5.58089463564591	5.5537399130864	4.85665305669721	5.12785687457231	5.16152272408066	-1.04711749628295	0.00296578400450418	0.0417628965047866
Merged-chr2-26932692-1	chr2	26932192	26933192	+	737.0	f0_balb.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	819.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	7.92772132025701	8.21206620891515	7.79079819295939	7.62910489597989	7.84870569221038	7.74282654296831	-0.356790449500726	0.133484368101544	0.488692066303093
Merged-chr7-4064071-7	chr7	4063593	4064593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113474)	promoter-TSS (NM_001113474)	-889.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.72772073572992	6.6840408905183	6.54323194948847	6.76091557041461	6.67784018499793	6.73592252063171	0.100089851719868	0.693618548112766	0.918960880648635
Merged-chr18-64887218-4	chr18	64886697	64887697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-559.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.71200230452524	5.74349712738454	5.69780563057267	5.92080641808064	6.00868510147182	6.09167374343618	0.510971330919616	0.0870629834151282	0.39114177009913
Merged-chr3-87377449-3	chr3	87376940	87377940	+	736.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	1053.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	4.74650514926939	4.88265702786039	5.02058049104587	6.35674328625123	6.80817859612611	6.13538039785141	2.98882979386068	1.88458104501828e-16	6.90802729488462e-14
Merged-chr13-99334221-4	chr13	99333738	99334738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 4 of 9)	RMER16_Mm|LTR|ERVK	10440.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.2777243399067	6.64096896233617	6.30138375156746	6.63090326988802	6.81626877022131	6.44111226618637	0.357215548785276	0.217716805251321	0.611656200779633
Merged-chr2-45692973-4	chr2	45692487	45693487	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3618.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.96043466454597	5.16915635041825	4.76947826225969	4.70449406558456	4.53447625062159	4.75666934704814	-0.739877282616241	0.0686839518130985	0.342916972426755
Merged-chr6-97470978-2	chr6	97470478	97471478	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-11692.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.37920049951964	4.5561650777699	4.82747729453619	4.84320901221977	4.78211011171576	5.32660531412094	0.921162518705457	0.0363680235128607	0.234654970569023
Merged-chr11-106704156-4	chr11	106703650	106704650	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	11131.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	5.36133556796919	5.11368364607453	5.32418280698058	5.66160569279987	5.20493622778819	5.15647527876606	0.191513432419721	0.609148238333036	0.885053989692691
Merged-chr18-55624336-3	chr18	55623860	55624860	+	989.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-631769.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.78179528887363	2.97782968124367	2.8766096756655	2.65064301318582	2.76679925769492	2.76546474994921	-0.790814659539426	0.279039075507289	0.67650369729351
Merged-chr17-83682100-4	chr17	83681580	83682580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24083.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.0105445317525	5.10394773523432	5.29454942730103	5.24005844553748	5.0733110498824	5.44217710267212	0.239620062399294	0.516165925491834	0.844051513295388
Merged-chr19-53564418-4	chr19	53563921	53564921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35103.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	5.20442805973565	5.02969407935095	5.07583023138379	4.04147542081226	4.08694724674561	4.10912596785057	-2.61708506529577	1.11439475021139e-08	9.99949747123579e-07
Merged-chr10-117073436-2	chr10	117072936	117073936	+	592.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-9584.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	3.70454602647048	3.42285179973423	3.49548691458483	3.33297988229167	3.6007729481523	3.45505670765625	-0.274751703366709	0.644948337333156	0.900371814385472
Merged-chr2-30514982-4	chr2	30514472	30515472	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40773.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	2.2378345510433	2.2085340823392	2.11710962057786	2.42252990804004	2.26213740592457	2.57802405472257	1.60726187104878	0.0755032926451124	1
Merged-chr1-74378029-2	chr1	74377529	74378529	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	2826.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	4.6915133110879	4.54063650910288	4.60794980664226	4.91142418029072	5.01408331439495	5.1775373604578	0.945282537453924	0.0167366597670016	0.143526243278697
Merged-chr7-28397790-2	chr7	28397208	28398208	+	670.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019458, intron 11 of 13)	intron (NM_019458, intron 11 of 13)	4712.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	2.45433780354736	2.50969253148369	2.41251464293039	2.47919549066883	2.40500559862455	2.61318632151148	0.218683550681387	0.783848247224743	1
Merged-chr3-89386963-2	chr3	89386463	89387463	+	864.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355206, intron 1 of 3)	intron (NM_001355206, intron 1 of 3)	708.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	2.62908308885528	2.55554723533194	2.894725889827	2.96266052959496	2.48128873983066	2.96778537690691	0.629608465692637	0.43523860769392	0.798935749708325
Merged-chr2-129491870-2	chr2	129491383	129492383	+	754.791626	f0_balb.idr|f1_balb.idr	intron (NM_177653, intron 1 of 6)	RMER13A2|LTR|ERVK	44719.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	4.38203649593596	4.15432369846625	4.19351423385947	3.49098964549281	3.72054736082747	3.6568759805385	-1.95969974223338	0.000391284627040865	0.00864110081443132
Merged-chr10-49050176-4	chr10	49049668	49050668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	737769.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	6.23398759871039	5.94038932929747	5.83223128904708	5.66965902778877	5.64795410167668	5.29571860847545	-0.825984684369223	0.0144188630046356	0.129216062480965
Merged-chr17-57447952-2	chr17	57447452	57448452	+	581.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355723, exon 16 of 22)	exon (NM_001355723, exon 16 of 22)	89266.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	2.67227485761359	2.71193399157557	3.23544927975157	2.82374822854274	2.94151277267962	3.03648011795044	0.193697424652667	0.799213747192048	0.952241087526368
Merged-chr19-56811713-4	chr19	56811195	56812195	+	820.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 1 of 14)	intron (NM_170757, intron 1 of 14)	1988.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	3.37445513959931	3.01714692207262	3.28784519391997	3.06698285616632	2.63744682658945	3.19302280371217	-1.09395329923514	0.160642091404174	0.53337460660229
Merged-chr6-72899248-8	chr6	72898722	72899722	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	70.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	8.29649338556669	7.98909118090917	7.99650689823271	8.34710981451322	7.4742218927247	8.00829345597242	-0.156160131016273	0.591880690528483	0.87780418653262
Merged-chr5-112342506-1	chr5	112342006	112343006	+	577.0	f0_balb.idr	promoter-TSS (NM_138646)	promoter-TSS (NM_138646)	534.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	8.16986886073207	8.30980312823457	8.0856336430212	8.31382710495086	8.42808488456617	7.98430123480681	0.0955297955806132	0.680603759931894	0.914343246466782
Merged-chr8-33601942-4	chr8	33601422	33602422	+	784.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	2301.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.60811877138847	3.51930680120614	3.85856583009461	4.03434126471889	4.16306386612444	4.33147152603668	1.63110934551571	0.00222250288376421	0.0334775561101108
Merged-chr3-92135047-2	chr3	92134513	92135513	+	675.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027042)	TTS (NM_027042)	7741.0	NM_027042	69332.0	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	3.86540187221314	3.88423752879267	4.26920733495872	4.46479632034071	4.24221869426371	4.65177718747789	1.2327920706471	0.0133790624101306	0.123051290485481
Merged-chr8-106972923-5	chr8	106972420	106973420	+	951.675537	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	37170.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	6.75668279816051	6.950943497478	6.32933602007511	6.26091174456592	6.07632489722879	5.72085366484865	-1.0875993012324	0.000919900535791818	0.0168782985186694
Merged-chr2-58907361-4	chr2	58906883	58907883	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	152199.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.74473331651375	4.65969492877361	4.65578784759594	4.37950026439373	4.3879296887908	4.238820387469	-0.861411001184265	0.0451642739070593	0.268161702472049
Merged-chr2-127080940-4	chr2	127080424	127081424	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 2 of 7)	intron (NM_026678, intron 2 of 7)	10267.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	7.39999786242652	7.40144994617829	7.39389377757229	7.51707900684445	7.66621083958936	7.51327461658242	0.253439157850884	0.25632502486047	0.65342976180494
Merged-chr7-19816464-4	chr7	19815985	19816985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	6270.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	7.00367546527895	7.04439648223483	6.82543760358847	7.13806396763957	7.12899444946819	7.05487371740443	0.215280493585273	0.372965563828962	0.756883045585099
Merged-chr2-152806234-4	chr2	152805723	152806723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	22266.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	8.16956132138922	8.29305165352459	7.97895748457787	8.15469405165032	8.29356258967843	7.73856974964897	-0.0923597848394218	0.711913352992078	0.924889808252387
Merged-chr1-193200704-4	chr1	193200215	193201215	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	831.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	5.03653958246293	4.99262792392579	4.88912934189387	5.07414295351265	5.36352144717618	5.13636904984385	0.475087315115306	0.199846906978238	0.588465618084976
Merged-chr12-73737132-3	chr12	73736609	73737609	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 10 of 13)	intron (NM_008856, intron 10 of 13)	152313.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	2.74250638819956	3.02218938761077	3.11390349779208	2.85896991014993	2.74979759136128	2.83516467368414	-0.748226800348305	0.30184200463406	0.698510917160457
Merged-chr11-46841438-2	chr11	46840938	46841938	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 7 of 8)	Lx7|LINE|L1	30639.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.72945988531118	4.61428984731842	5.46261360716357	4.65972565142147	4.75747183552627	4.51555171587893	-0.738989433670758	0.119103245285503	0.461413799189562
Merged-chr11-96822836-3	chr11	96822324	96823324	+	743.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008686, intron 2 of 4)	intron (NM_008686, intron 2 of 4)	1107.0	NM_001361682	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	2.94377951488201	2.7412901238936	3.09441280536385	2.8481021250471	3.1479518441329	2.80517217421481	0.0872516442490627	0.906048395214773	0.978576016264467
Merged-chr19-5570165-2	chr19	5569665	5570665	+	766.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	2141.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	3.76512501126477	3.96261093227371	4.25381357076003	3.96489582021697	3.82763018938116	4.01303856465422	-0.202177513679663	0.699738293786356	0.920711195189708
Merged-chr4-141669793-2	chr4	141669293	141670293	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5678.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	7.0434985503497	7.01630950562664	6.40608720098363	6.26190590523412	6.23289749052836	5.96554077273191	-1.119562573646	0.000333942368974507	0.00761278811989883
Merged-chr9-65021100-2	chr9	65020600	65021600	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 1 of 10)	CpG	617.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	6.02212846368146	6.25176095121686	5.94433280603075	5.7659472590353	5.55124199568767	5.91073286778326	-0.613753256892027	0.0515629285316776	0.28955909820201
Merged-chr17-42911768-3	chr17	42911282	42912282	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35358.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.80804857067448	7.06039056536918	6.98638647917153	7.39310901514531	7.53090376826108	7.13766990080869	0.626145946339124	0.013758369684716	0.125316542774575
Merged-chr7-34447310-2	chr7	34446810	34447810	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-57605.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	2.66343612281163	2.84753729970122	2.9014505539535	2.90168095580301	2.76226674276148	2.91455767477962	0.265735409036107	0.711119470452728	0.924558647751225
Merged-chr3-108047138-4	chr3	108046644	108047644	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	4.06136784975359	3.98056623377664	3.94476385200278	3.81574946539949	3.95471948580285	3.63850422257159	-0.549688785588905	0.297451105841421	0.694133231024007
Merged-chr17-50503846-2	chr17	50503346	50504346	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5701.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.79797761988443	4.38991458993358	4.31310824449629	4.62053566953151	4.91073287849251	4.4315669868152	0.366621006558308	0.433766896006342	0.797967674446634
Merged-chr1-55404633-3	chr1	55404153	55405153	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.14657938310795	3.63270370972723	3.70132390531863	3.24076757124955	3.33516301310198	3.23761667123137	-0.914206173378201	0.162727670331733	0.536188662408322
Merged-chr9-78489095-4	chr9	78488581	78489581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	7.23931297826904	7.3588991263699	7.04414679038443	7.40132159277247	7.54969790572185	7.04669153260117	0.197513112068105	0.453352318805573	0.809761744660326
Merged-chr4-59534053-4	chr4	59533543	59534543	+	880.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	15321.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	5.30300923263423	5.55412897146671	5.64516585919564	5.76122862522985	5.44827421633074	5.54334692057812	0.163509478864591	0.631749286978176	0.895268660516385
Merged-chr5-123076281-4	chr5	123075766	123076766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039723)	promoter-TSS (NM_001039723)	-9.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	7.44917774081942	7.25880344637524	6.85379867094985	6.99567014008992	6.94758690982163	6.66472507210626	-0.509475108169931	0.0704578626423362	0.347849640129554
Merged-chr7-132244205-2	chr7	132243705	132244705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-71459.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	4.84285232066321	4.76000161517394	4.92754509273561	4.79531232012041	4.72758471536456	4.95697315159767	-0.0420432221880759	0.91432738429765	0.980912729144991
Merged-chr3-34081290-4	chr3	34080797	34081797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286972)	promoter-TSS (NM_001286972)	57.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	5.55417269869207	5.94268606535801	5.72636536434754	5.61023008770361	5.92523080787197	5.78831348162642	0.0570469612932464	0.862607872275941	0.968083292979043
Merged-chr11-70848645-4	chr11	70848125	70849125	+	863.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	B1_Mus2|SINE|Alu	3864.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	5.65786383795573	5.251939661544	5.50621713965268	5.36288208156291	5.54208297692931	5.56872279265014	0.0226162872750662	0.947918300156789	0.988023646838258
Merged-chr15-64102126-3	chr15	64101652	64102652	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-41704.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.39353572793065	6.07652227823997	5.95264422715853	5.47583727223804	5.12767069174713	5.08006018174719	-1.6892369202353	1.49048773411598e-06	7.69345018092597e-05
Merged-chr2-163736117-4	chr2	163735614	163736614	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 2 of 11)	intron (NM_001272052, intron 2 of 11)	14125.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.39192819539584	3.25057300570688	3.39176834164975	3.08427480462887	3.15665840968237	3.51378511458328	-0.351145854875891	0.583792253440556	0.874225271981634
Merged-chr10-81298068-4	chr10	81297578	81298578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	5115.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	9.5436202309254	9.66149657231306	9.24311182319851	9.08063110730602	9.50123395877669	8.9539738315682	-0.393946668656735	0.10901635348345	0.44106937375527
Merged-chr5-149053087-4	chr5	149052573	149053573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010439)	promoter-TSS (NM_010439)	-16.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	7.02948773696398	6.77906888008285	6.87706744691147	7.08967393526917	6.54514098792092	7.28194416760692	0.154024466221665	0.608197634016467	0.884921814563233
Merged-chr8-105497049-4	chr8	105496557	105497557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175160)	promoter-TSS (NM_175160)	-155.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	4.56419545045381	4.70373448188066	4.17651790157112	4.29377386653585	4.24208099513165	4.24697088400391	-0.650418055198921	0.164956494313922	0.539617077326343
Merged-chr10-17684031-4	chr10	17683535	17684535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39193.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.20106163444291	5.88096899763512	6.10201745687214	6.27080091631365	6.35785812861457	6.11866171697332	0.327686422611153	0.265357343493961	0.663104836467744
Merged-chr16-23136762-4	chr16	23136254	23137254	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9024.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	4.06708420932646	4.17851437469232	4.45600704125773	4.15310165832998	4.11131352580592	3.9356193009982	-0.448735937561359	0.36281301942481	0.748344010319516
Merged-chr7-140999497-4	chr7	140998998	140999998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11246.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	7.02810367234837	7.19813849765453	7.13712874422583	7.11729493498038	7.24218551535352	7.31116459668011	0.152061582016837	0.522250027337019	0.847506520484364
Merged-chr11-115655954-2	chr11	115655454	115656454	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-27659.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.09545641373837	6.31534601591311	6.27232897622177	6.25036949727013	6.55341147594096	6.63071508192643	0.424257650843223	0.139650327489339	0.499316452599424
Merged-chr5-142817872-4	chr5	142817380	142818380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122730)	promoter-TSS (NM_001122730)	-493.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	6.03744546728191	6.12186027104574	6.41502116695606	6.085531787883	6.32474486828918	6.75542505045885	0.359060327121313	0.267117497196595	0.664550966981069
Merged-chr16-57212944-2	chr16	57212444	57213444	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 3 of 17)	intron (NM_026254, intron 3 of 17)	-11473.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	3.11565531212145	2.97106730622014	3.46895360219013	3.19091281275786	3.18352468719951	3.27594759941519	0.090802733257665	0.891311274946705	0.974795270136864
Merged-chr4-43391531-2	chr4	43391031	43392031	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	B1_Mur1|SINE|Alu	9549.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	3.07270916758141	2.96169110226031	2.93327278653205	3.00765177193827	2.84806618382117	3.29136345799029	0.282351911804221	0.685913062095878	0.916538830253462
Merged-chr11-55008393-4	chr11	55007899	55008899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 6 of 24)	L2b|LINE|L2	25072.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	6.43181753845106	6.09348435474558	5.7563758987239	5.57996216627185	5.63162077907052	5.42946645026572	-1.02809342034437	0.00278968191003107	0.0397881131933263
Merged-chr1-43338063-3	chr1	43337561	43338561	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107690.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.9762590374913	5.02986779095757	4.78005938726513	5.03307964521617	5.04083433013213	4.92492620888193	0.135574625812086	0.720105823655514	0.928048635680338
Merged-chr19-16085273-4	chr19	16084779	16085779	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47552.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	6.73582407439012	6.75277949644152	7.04106176058087	7.07076964783638	7.55464205373942	7.33460392249798	0.752007391067601	0.00511886031433078	0.0621712623320528
Merged-chr3-60480413-1	chr3	60479913	60480913	+	620.0	f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	7583.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.7011588260252	4.88304138757083	4.57474350096845	4.98684655853533	4.93222205606448	4.95986417935648	0.498572268747191	0.207152572511861	0.597920729067479
Merged-chr2-35979341-5	chr2	35978892	35979892	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029774, exon 1 of 10)	exon (NM_029774, exon 1 of 10)	232.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	7.36603906999106	7.06864698691535	6.20240805365889	7.04285561243075	6.24023749214305	6.33290430844599	-0.570687182932324	0.376767722434816	0.759376238938963
Merged-chr15-25843169-4	chr15	25842662	25843662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034851)	promoter-TSS (NM_001034851)	-136.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.87349563550987	4.23671096411499	4.49640669671158	4.36158375657815	4.17423730151985	4.14996743543292	-0.858376846954031	0.0789321465154666	0.371187184766528
Merged-chr11-117122930-2	chr11	117122430	117123430	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	7758.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	3.38555394286421	3.45763080666492	3.45201584857829	3.49319744889359	3.20790070717441	3.67746489795737	0.124414090134151	0.838677413101815	0.96255643337768
Merged-chr1-136143543-2	chr1	136143043	136144043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	12153.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	7.088103972425	6.6641618337458	6.78835462845962	7.2117808746728	7.34598332807076	7.0089120092102	0.516790580302301	0.0547062157696598	0.300382394203633
Merged-chr15-67733193-4	chr15	67732722	67733722	+	889.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	506453.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.12167743578156	3.19100275329538	3.27117986121207	3.70885047115039	3.74456455911211	4.18214866701545	2.66062698621895	4.02068672381496e-05	0.00131351904560344
Merged-chr11-21573042-1	chr11	21572542	21573542	+	542.0	f1_c57bl6.idr	intron (NM_145425, intron 1 of 17)	MTC|LTR|ERVL-MaLR	761.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	4.27656721717123	4.23110250019853	4.13429049746101	4.20888233723204	4.14598688717818	4.4242898555407	0.0997702344208856	0.830248398136106	0.960219727001139
Merged-chr9-66895525-4	chr9	66895024	66896024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24181.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.20871247725791	7.43555005825993	7.0821062122542	7.10964404415023	7.68319432880251	7.0863519848374	0.119936670268474	0.67658014802392	0.912549881054299
Merged-chr11-76578054-4	chr11	76577564	76578564	+	807.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198894)	promoter-TSS (NM_198894)	-325.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.73831749632519	2.69104313903361	2.85832596034534	2.50988553539197	2.45122274152381	2.98690488520026	-0.501116361253008	0.538111085926551	0.854993359387739
Merged-chr2-29620137-4	chr2	29619618	29620618	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	CpG	398.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	7.02793259142719	7.10262574708697	6.83169617810962	7.1464569226782	6.89852498715633	6.56984136955331	-0.147571853473371	0.595806834847756	0.879691516679893
Merged-chr18-4351878-4	chr18	4351382	4352382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1071.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.39025801706947	7.55352413595942	7.38929249537805	7.7291920082668	7.81030966710212	7.51010649203996	0.358686118279162	0.1227624677572	0.468806251647214
Merged-chr17-71288326-4	chr17	71287842	71288842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	22669.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.95976983252562	7.87556119831815	7.36676905264241	7.09784885025117	7.18373168952498	6.36922901845555	-1.20785020029786	0.000230126421594052	0.005612063097303
Merged-chr5-149247283-4	chr5	149246790	149247790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17714.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	7.0397046506373	7.06450301271748	7.22092595827214	7.15967743086835	7.40179296235742	7.35618145512142	0.30930731789375	0.19759143403365	0.585720984790593
Merged-chr7-98178910-4	chr7	98178411	98179411	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	-637.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	6.08328511447494	6.02783722968505	5.79008737566736	6.57644605478844	6.32808909988734	6.2561105975642	0.694156208134678	0.0193812286107801	0.158155389219186
Merged-chr11-115081093-4	chr11	115080614	115081614	+	911.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-10317.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	3.45274296777078	3.23393911559817	3.3762944995164	3.30330876853263	3.33424023319245	3.39194831474467	-0.0574726586147528	0.92408876167775	0.982900348453983
Merged-chr14-34312690-4	chr14	34312184	34313184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1957.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	5.59523822685714	5.85513575557931	5.51612494917444	6.07046988732495	6.28848272993746	5.80990813579151	0.7238099525412	0.028335005265514	0.201502136757209
Merged-chr17-6742301-4	chr17	6741806	6742806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 9 of 12)	intron (NM_009510, intron 9 of 12)	36476.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	5.2242710453273	4.76488796084347	5.23050511359493	4.73577197871556	5.03509847426002	4.85196936111639	-0.428099790283632	0.296556273539583	0.693171366955017
Merged-chr17-24741607-2	chr17	24741107	24742107	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 3 of 4)	B1_Mus2|SINE|Alu	5014.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	4.46281764587006	4.47794336384826	4.93237800693818	4.5345517527191	4.59762351467081	5.02763423902157	0.228960974572158	0.614010704183373	0.887359362819406
Merged-chr15-102518067-4	chr15	102517580	102518580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009319)	promoter-TSS (NM_009319)	-112.0	NM_001253795	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	6.71644358359836	6.73301782742473	6.89904225023744	6.8570666598844	7.09912497021945	6.97088653985075	0.316217047708094	0.209224697613983	0.600606107743886
Merged-chr9-95188505-2	chr9	95188005	95189005	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	218765.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	3.04789011434015	3.09267194426805	2.74843159240073	2.95502249325702	2.85608002853108	3.013547670505	-0.177170232665778	0.804817520762479	0.953651704501661
Merged-chr17-71133268-4	chr17	71132770	71133770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50262.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.43047933427193	5.20545049106055	5.34904182400863	5.08707046798097	5.17538679354184	5.19155475541991	-0.362048621219007	0.303035732721527	0.699742029428313
Merged-chr8-126917325-2	chr8	126916825	126917825	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28596.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	4.65968727741592	4.42048152430587	4.39579401853737	3.99206231963874	3.75395885834931	4.14785238258722	-1.52226588592276	0.0020659280732854	0.0317313010627773
Merged-chr14-40949918-4	chr14	40949430	40950430	+	919.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	L1MC4|LINE|L1	-1721.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.14064830264119	5.15555880879136	5.40510347751594	5.03304587767671	4.91816827972797	5.16759637324362	-0.409472020275469	0.266062972780347	0.663845028010049
Merged-chr7-126154931-2	chr7	126154431	126155431	+	743.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 6 of 23)	intron (NM_028816, intron 6 of 23)	45570.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	3.85996118204338	3.67846932989315	3.48296387725294	3.66433419752664	3.5522685676008	3.55562429437197	-0.339368783006244	0.551020788766371	0.860923422556561
Merged-chr5-134522064-4	chr5	134521575	134522575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	30359.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	5.81023599948337	5.93836639204454	6.08228309500738	6.12536036827781	6.15390754678359	5.98569819254859	0.269095482112193	0.361799376617648	0.747478680384173
Merged-chr15-100680158-2	chr15	100679658	100680658	+	901.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	7762.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	4.55964429001704	4.92523383485625	4.97704693447074	5.12693579052179	5.10269785875782	5.17501405753529	0.659934312736103	0.0911878466583197	0.401858647164494
Merged-chr2-66125122-4	chr2	66124629	66125629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015736)	promoter-TSS (NM_015736)	-336.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	5.91021957566953	5.73003600889722	5.49091444610721	5.55662733362279	5.46717705758358	5.22501769988463	-0.559840431310247	0.104465670947833	0.431319384122825
Merged-chr6-119483130-3	chr6	119482574	119483574	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	3406.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	4.10016983412633	4.35763696290998	4.45829659998012	4.41320325037135	4.36037551277583	4.26444457489713	0.112553549715998	0.806516963098364	0.954191062388418
Merged-chr2-148686449-4	chr2	148685949	148686949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	5329.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	6.54737567606769	6.74744264957406	6.4854347693244	6.67117921752856	6.92725553356127	6.70062064243718	0.273196593755583	0.307025016803991	0.703099001056797
Merged-chr12-36188450-3	chr12	36187977	36188977	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	29741.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	4.29122743551647	4.56567216857564	4.44429206018232	3.92360737791737	3.6081076052467	3.91333805467971	-1.86109599402699	0.000310439187964222	0.00717329185007692
Merged-chr11-94211310-4	chr11	94210816	94211816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009427)	promoter-TSS (NM_009427)	-138.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	7.05970184372889	6.69285857605878	6.7573668391183	6.96201160723346	6.69167154635713	6.72058986315723	-0.0828108213030179	0.760028429392956	0.940572672765463
Merged-chr6-115647547-1	chr6	115647047	115648047	+	606.0	f0_balb.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	28341.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.38936814410192	5.35791780355162	5.15044264220881	5.45548598322641	5.27037654732532	5.07105715963804	-0.0583700845813977	0.871077159837322	0.970222087171093
Merged-chr9-32518626-2	chr9	32518126	32519126	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	22826.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.63577821523616	5.43031974989774	6.01226292882941	5.75610356159039	5.68388540911775	6.11312238311132	0.274651607962943	0.435596668748672	0.799182768216606
Merged-chr3-88492633-1	chr3	88492133	88493133	+	825.0	f0_balb.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	679.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	6.21379899859625	5.78236657804218	5.7092561206704	5.44737651448121	5.34333299471701	5.21393101395486	-1.08795516478854	0.00183883306196788	0.0289509217446024
Merged-chr6-136904448-1	chr6	136903948	136904948	+	919.0	f0_c57.idr	Intergenic	Intergenic	17732.0	NM_026983	69187.0	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	2.39329111614223	2.41994859302964	2.34744294581823	2.46332303073437	2.2553917021695	2.55080658551121	0.224293891076734	0.787106152734649	1
Merged-chr12-26464577-4	chr12	26464074	26465074	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4641.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	3.62555664281162	3.28020455411775	3.81393415112453	3.43797013964486	3.7539514616785	3.63504425902417	0.111811276609661	0.854603412269281	0.965987623019113
Merged-chr9-77834779-3	chr9	77834261	77835261	+	815.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80226.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.45289683529274	3.24686136690229	3.04519644528112	3.02467475158836	2.97871418864976	3.17959675323685	-0.893867196617006	0.18497346315962	0.569076167857577
Merged-chr16-33883186-3	chr16	33882687	33883687	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 4 of 14)	intron (NM_001145884, intron 4 of 14)	53522.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	3.88773750365921	3.63810868638974	3.90169196911076	4.14214073407588	3.85120981850867	4.01961625722329	0.604458254418516	0.248519156498845	0.645626927734048
Merged-chr2-167799763-4	chr2	167799220	167800220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108543.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.41408921708298	7.13936800825918	7.56439597737134	7.60690334347414	7.74299219647939	7.28340270552377	0.275338158270252	0.293463061846905	0.690276375383417
Merged-chr9-90233519-4	chr9	90233024	90234024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.61809715138626	7.28365530022415	7.2756933823205	7.48249922401111	7.46528246644552	7.45445148264345	0.0880877688121165	0.714138647931042	0.925756575982089
Merged-chr12-111430051-4	chr12	111429526	111430526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	12581.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	8.64541817795465	8.44820667809476	8.47053121800204	8.56946740075841	8.81796809184035	8.49274327813046	0.157221001524153	0.468759221149515	0.818701612865445
Merged-chr19-41375241-2	chr19	41374745	41375745	+	690.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	9825.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.07572506829669	5.16174948665149	5.17949927519885	5.08241652104113	4.84437377363002	5.24291574265925	-0.177591053791689	0.635381372023936	0.89649427032154
Merged-chr10-69246888-2	chr10	69246388	69247388	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	33694.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.24891172039839	5.34382122128484	5.45008707696211	5.67925753084323	5.84011972349765	6.05293324134644	0.963549319757287	0.00352156996581138	0.0473687025081204
Merged-chr2-160359095-1	chr2	160358595	160359595	+	590.666687	f0_balb.idr	Intergenic	Intergenic	7970.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	3.00124378664269	2.73845833628498	3.18749474313532	2.73133632571388	2.62777898932635	2.80175805958597	-1.36115476834424	0.0724944606395877	0.353686255109869
Merged-chr5-99218465-9	chr5	99218001	99219001	+	887.1851810000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145839, exon 14 of 14)	3' UTR (NM_145839, exon 14 of 14)	34426.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.07290490348865	3.72841194584959	4.16359645213934	4.0628307603764	3.76958173166732	4.27312189079715	0.13653065012195	0.800512035294058	0.952563996979043
Merged-chr11-90249339-4	chr11	90248846	90249846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026178)	promoter-TSS (NM_026178)	-130.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.90545718778305	7.02272854228574	6.76485079457477	7.03742122391224	6.79666845090237	6.71070175741196	-0.0761406550607625	0.770116108804631	0.943335264488153
Merged-chr16-43950165-3	chr16	43949670	43950670	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	28880.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	5.10979101504816	5.11936168558859	5.5173613166376	5.2629959335602	4.94713950184177	5.23567840907861	-0.209396015463308	0.58225805016203	0.873654816299381
Merged-chr10-34129690-4	chr10	34129244	34130244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1772.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	6.61599886453033	6.46582393758636	6.73963033659766	6.61622949920379	6.72620904690377	6.5182575015044	0.0393526980486378	0.882162893827864	0.973037237292428
Merged-chr5-99423183-4	chr5	99422676	99423676	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-170249.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.31105090419243	3.48928273532245	3.19618505104184	3.43882026530277	3.45025307904461	3.65851184257798	0.639840365179173	0.295878407065108	0.692709629999205
Merged-chr5-120779666-3	chr5	120779101	120780101	+	681.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1942.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	4.61736384168215	4.56451842565935	5.21837024890895	4.92222288368796	4.50508094915923	4.97318745159946	-0.0316711937867556	0.945231070780412	0.987875414328125
Merged-chr13-43549959-4	chr13	43549454	43550454	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 4 of 8)	intron (NM_001081059, intron 4 of 8)	10237.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	6.96349752711963	6.96617911856209	6.99294702299607	6.80205781168599	6.8779619695118	6.67873268011114	-0.273653729681046	0.266169642480568	0.663934832184218
Merged-chr14-27356343-4	chr14	27355838	27356838	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5051.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.679984055247	6.63951745643392	6.75731593519609	6.82464336586157	6.96831297746559	7.01242836533677	0.385129476202718	0.121950143327015	0.467140572965394
Merged-chr9-21927479-4	chr9	21926980	21927980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253870)	promoter-TSS (NM_001253870)	9.0	NM_025977	67119.0	Mm.154305	NM_025977	ENSMUSG00000006241	Ccdc159	2510048L02Rik	coiled-coil domain containing 159	protein-coding	7.17621319621461	7.37796299916228	7.1100458914033	6.87545620337835	7.25334247707823	6.58345315797329	-0.423263999840963	0.142874692474641	0.504544159732276
Merged-chr17-29361572-2	chr17	29361072	29362072	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	658.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.11405072925386	5.11504143784003	5.57484632795637	5.29743124085324	5.32259497583753	5.41939874939199	0.145796319392033	0.690111965282507	0.917664185493038
Merged-chr3-109123873-3	chr3	109123358	109124358	+	616.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	709.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	4.97904114396683	4.9064772429656	5.19810148693977	5.07979130754054	5.02146347929575	4.63176272185952	-0.191398096079729	0.633814976107376	0.896150833168098
Merged-chr18-10052727-2	chr18	10052227	10053227	+	758.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-22578.0	NM_021522	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	2.8166901451554	2.79718124749921	2.59088674984873	2.84917726938473	2.63239309661268	2.91853232791887	0.301749983509866	0.690440075525526	0.917836464210502
Merged-chr19-6996155-4	chr19	6995660	6996660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	29.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	5.00904797950871	4.89040898810286	4.9534698834652	5.04057333443728	5.02743951637746	4.7047698474341	-0.0157128645486194	0.967668662422912	0.992581088872982
Merged-chr11-51264088-2	chr11	51263588	51264588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-426.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	8.27552737130001	8.75980532336872	8.03163802940453	8.26736914157621	8.61068947060628	8.13909497869537	-0.0552954117261838	0.842945577106344	0.963230717210186
Merged-chr9-61022720-4	chr9	61022250	61023250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5681.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	6.99223862694688	7.02611511904182	6.77845028741018	6.90852218235148	7.03637131253392	6.95562616425061	0.0397093012596022	0.87268097521086	0.970270027463559
Merged-chr4-137994205-3	chr4	137993686	137994686	+	861.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	CpG-10542	730.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	7.83708889386293	7.68632519106806	7.76735752142219	7.86204399585985	7.70057960542189	7.70150339770561	-0.0107528837832598	0.960870529082916	0.990386809359123
Merged-chr1-60621982-3	chr1	60621483	60622483	+	940.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55218.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	4.00325288101327	4.04270621200761	3.60270628439362	3.29516098343599	3.62818891601461	3.7296359381135	-1.13549692307511	0.0616335464233888	0.322096703023892
Merged-chr5-129942588-7	chr5	129942115	129943115	+	893.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	CpG	506.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	4.66675733891801	4.51908743307172	4.64193241993126	4.75301748144698	4.70911339699062	4.74738213886509	0.299507193637103	0.45738232864432	0.812253981549101
Merged-chr12-87261093-2	chr12	87260593	87261593	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	intron (NM_001142581, intron 2 of 18)	3151.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	5.69394361617065	5.38111631574594	5.52344239583517	5.5195314961449	6.17115141648505	5.82891785782583	0.61505770647847	0.0848855021471349	0.385774911937233
Merged-chr1-88636875-2	chr1	88636375	88637375	+	695.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	65316.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.87750852204476	4.66090551757834	4.99656545076916	4.87125998650205	4.80916206109681	4.81009171197092	-0.029938805014012	0.939589112379492	0.986720663284284
Merged-chr10-10460332-3	chr10	10459834	10460834	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	L1MEd|LINE|L1	11980.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.86578069112591	6.12117428455843	6.2405736381018	6.74884122372353	7.05861611481508	6.83268283707044	1.31652588888271	3.30192593739912e-06	0.000154178817844616
Merged-chr16-33076439-3	chr16	33075912	33076912	+	764.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	MTD|LTR|ERVL-MaLR	13891.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	5.56562313210546	5.66052212647798	5.57176006058707	5.55275345886682	5.72187220791462	5.25816965815356	-0.113632940517331	0.738889880060852	0.934106252288505
Merged-chr8-33668400-2	chr8	33667900	33668900	+	802.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	15162.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.31824920085117	3.12154105476599	3.28941391859656	4.06062801762448	4.20907586633193	3.88461084682582	3.12107359982253	1.33580416802817e-06	6.99934466078637e-05
Merged-chr11-117873433-4	chr11	117872933	117873933	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027919)	promoter-TSS (NM_027919)	93.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	6.116429408599	5.94526054812708	5.96495778300366	5.80013076330998	5.53110074665576	5.21260096040166	-0.838300404770342	0.0139473636340333	0.126419633252794
Merged-chr11-82088154-4	chr11	82087655	82088655	+	807.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13690.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	4.20204345464869	3.91661985742826	3.94158019530707	4.17501481533287	4.56495283552337	4.30496253772166	0.921431482270266	0.0628953748381362	0.326233393974156
Merged-chr9-64340647-4	chr9	64340148	64341148	+	956.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172519)	promoter-TSS (NM_172519)	125.0	NM_001177784	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	7.2942540370991	7.65308312022853	7.38386294611214	7.14622505732092	7.15414910028866	7.343840411194	-0.361314391259632	0.143310583165238	0.505355524537813
Merged-chr7-126236180-3	chr7	126235739	126236739	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131046, intron 2 of 4)	intron (NR_131046, intron 2 of 4)	1365.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	3.96809369037029	4.0188926399258	4.28740010934264	3.81447727163101	3.6912577265991	3.95706385175517	-0.841912940701678	0.104982545290877	0.432306361005943
Merged-chr19-53568023-4	chr19	53567541	53568541	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-32355.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	4.02511981528239	4.30332797415999	3.75562856009991	3.51445123504952	3.08635340215007	3.54661597043104	-2.38648938225281	0.000322436214804235	0.00739098417670269
Merged-chr17-59013157-4	chr17	59012503	59013503	+	808.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_145522)	TTS (NR_145522)	319.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	4.10467385663121	4.19175673986454	4.13771372368274	4.06823700635208	4.19131764657311	4.33878556027926	0.148524814882041	0.752140440583059	0.93809248920437
Merged-chr4-142021407-4	chr4	142020908	142021908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	3510.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	7.38993193254181	7.46473322010866	7.36604817723991	7.30297695795284	7.81371297814883	7.44476656355467	0.203397824550913	0.423877820066733	0.792272050905538
Merged-chr16-94658617-2	chr16	94658117	94659117	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	47198.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.44524006927145	3.65576463911698	3.39847176795368	3.37767660185284	3.28990319469156	3.5249732448925	-0.433971699564637	0.467749187255812	0.81815434317961
Merged-chr1-153910607-4	chr1	153910105	153911105	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008131)	TTS (NM_008131)	10676.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.26221955632846	5.138935985622	5.37668087499596	5.17770033904451	5.15227423627085	5.3208645417059	-0.0878895796485086	0.803096626699003	0.953422605427866
Merged-chr7-28442003-2	chr7	28441503	28442503	+	846.444458	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 3 of 6)	B1_Mur3|SINE|Alu	1066.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	6.60393914354948	6.44665315368325	6.68868113941718	6.58718349505174	6.63994420556821	7.09802960543797	0.327180125644296	0.253642502788566	0.651029840583349
Merged-chr2-155276390-4	chr2	155275912	155276912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	48.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	8.26144969354499	8.03510293275588	7.76240414323244	7.85266161859273	7.51142588266109	7.51161701171175	-0.579462537916525	0.022742428054755	0.175875429340801
Merged-chr18-32818185-4	chr18	32817717	32818717	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1357.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	6.62481781555141	6.46768357347774	6.31520545693231	6.69089475634804	6.91908254901068	6.58467656511018	0.421161072281493	0.126726080987481	0.475668700234857
Merged-chr9-21131361-4	chr9	21130851	21131851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-76.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	6.14102042080003	6.06858719697155	6.28225901032108	6.57750309795151	6.69989755527755	6.49305151565586	0.720863237514477	0.00814844202556202	0.0871597331357455
Merged-chr1-92742534-4	chr1	92742001	92743001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89144.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	4.68162679901394	4.44384327978643	4.40036284519185	4.21599002320823	4.12774494583218	3.9240242401506	-1.11672679766231	0.0195472036233414	0.158960488574178
Merged-chr3-88491862-2	chr3	88491362	88492362	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1450.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.05526017340911	3.83535556978638	3.92099493349475	3.50054529353028	3.59891957927954	3.51419323984502	-1.34521962897904	0.0155556127845076	0.136158471703944
Merged-chr4-129462569-2	chr4	129462069	129463069	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133889, intron 2 of 10)	intron (NM_133889, intron 2 of 10)	890.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	4.90762648942207	4.98347499004477	4.71541600348098	4.87126446958654	5.17534474940784	4.90205928554473	0.25706460413064	0.514394049354849	0.843107848235413
Merged-chr3-94595957-4	chr3	94595461	94596461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-13245.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	4.69040037810969	5.06272918363513	4.64769877868541	4.27484393599533	4.62623765319703	4.40992073139619	-0.87461232479978	0.0522996190881614	0.292377499669963
Merged-chr10-13687400-3	chr10	13686898	13687898	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-134256.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	3.95394106747843	3.94927065891136	3.82537129591149	3.54235056689169	3.50603859905673	3.63249346047541	-1.21838224263182	0.0249490412529814	0.186874424221059
Merged-chr5-32460513-2	chr5	32460013	32461013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	1543.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	5.38481211611355	5.38297473838904	5.60147123068272	5.3073160011582	5.60107845815922	5.18068099854538	-0.122188171221259	0.731753935610688	0.931535693390145
Merged-chr13-111805093-1	chr13	111804593	111805593	+	1000.0	f0_c57.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3900.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.9627479239592	7.94428210932255	7.6109436139763	7.82000417420453	7.94349852662242	7.68660645541362	-0.0431984159142437	0.854352573007494	0.965987623019113
Merged-chr13-119810840-2	chr13	119810340	119811340	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	19377.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	3.24219712373272	3.05151579395708	2.97027274501386	3.12551629169289	2.82638911927438	3.16366095494415	-0.241766082356643	0.728348042080462	0.930478966998914
Merged-chr7-141476818-3	chr7	141476341	141477341	+	915.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	461.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	7.51877393114175	6.95456875493514	7.71474913106211	7.59423503955648	7.32862499474716	7.3966348674816	0.0206488081177831	0.942925245462483	0.987217876821358
Merged-chr7-144915076-4	chr7	144914523	144915523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347537)	promoter-TSS (NM_001347537)	-77.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	5.75792422090339	6.15508847055122	6.46304134482622	6.03327689390205	6.19690793577761	6.14965835563826	-0.0300033121463094	0.927020693044168	0.983578869536024
Merged-chr8-123422703-3	chr8	123422197	123423197	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023279)	TTS (NM_023279)	11133.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	2.22618929815724	2.1232033418725	2.10246088478816	2.36917303718513	2.36012684883893	2.5732791245376	1.97679185279672	0.0314191937184974	1
Merged-chr11-103019073-4	chr11	103018553	103019553	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1906.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	6.16494883710479	6.13312096116607	5.82394442876745	6.28394693293106	6.33150745145855	6.0377555552596	0.290430264607581	0.334269545382522	0.724882663975632
Merged-chr13-113618507-4	chr13	113618014	113619014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	50.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.08435383886716	7.68480155221089	8.03109398617624	7.80780653505753	7.62570813277213	7.78938090358515	-0.291835187578307	0.219868202256614	0.61423936831415
Merged-chr3-65882381-3	chr3	65881952	65882952	+	858.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	75797.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.00642779604183	2.80608206716663	2.86246433561108	3.02358578103375	2.78459594879613	3.11378050432669	0.380249475096488	0.592111282337302	0.877927182963386
Merged-chr8-69088639-4	chr8	69088128	69089128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-108.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	7.84347402850992	7.92576140152501	7.66023116149329	7.85141446966952	7.99081117559458	7.73508956787574	0.0699807782807843	0.757648303235696	0.939883186830738
Merged-chr4-55364536-3	chr4	55364029	55365029	+	728.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	B3|SINE|B2	14487.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	4.82580107280861	5.09455566028577	4.76165563623062	4.68498404465141	4.84609860370266	5.40976334814578	0.216843322942261	0.620384833183423	0.890068302891401
Merged-chr2-26962916-4	chr2	26962408	26963408	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	1478.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	6.05502352748714	6.04033951363717	6.03261711468209	6.14358017600788	6.62575769746491	6.63964322065977	0.742354219712412	0.0134471130453404	0.123431592087886
Merged-chr11-48856971-4	chr11	48856459	48857459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14461.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	5.61765383040183	5.76312068649511	5.82971645453405	5.72533828717007	6.04191499104457	5.91503637313759	0.305475194104124	0.329510123384957	0.721399184090983
Merged-chr2-45105852-4	chr2	45105349	45106349	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	4428.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.40043776219508	6.32060940756309	6.51322763802829	6.50422852054099	6.56762317482895	6.60606413039622	0.244202179947926	0.354257659923289	0.741449626896494
Merged-chr3-59264199-4	chr3	59263710	59264710	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 35 of 43)	intron (NM_177855, intron 35 of 43)	-1225.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	6.59271895770264	6.74261872951084	6.66636900675569	7.0126998933605	7.08402291373102	6.85033019768919	0.503916995183392	0.0453252340193855	0.268753799778025
Merged-chr11-77493246-4	chr11	77492740	77493740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-172.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	5.08822207351238	5.13804678070279	5.04298961898085	5.35454918796437	5.08922923439699	5.21036421800104	0.258961681732459	0.472219492298562	0.8205191831757
Merged-chr13-52100890-2	chr13	52100390	52101390	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	4149.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.1199554244116	3.99675136177066	3.88442129516313	4.30612637136397	3.61979621879896	3.79367708710052	-0.18624808640614	0.742894363828508	0.935368371900894
Merged-chr13-101736852-2	chr13	101736352	101737352	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	31365.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.9594328881839	5.68171326279117	5.69542982783984	6.10899363945909	6.04431076157035	6.00931641140664	0.465719206803153	0.12562597092055	0.474191879348443
Merged-chr9-49049755-2	chr9	49049255	49050255	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5826.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	4.77193485022271	4.70234153245034	4.69421104438513	3.66741201165557	3.6479907844994	3.85655450847262	-3.06092307833788	9.5955904745385e-09	8.71535196878198e-07
Merged-chr1-154076186-3	chr1	154075685	154076685	+	818.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-125002.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.92962121658032	4.99824758942005	5.35336135194526	4.70790141867054	4.76749226981205	5.46810969250658	-0.171941854915435	0.698935125014523	0.920482326683788
Merged-chr11-69514972-2	chr11	69514472	69515472	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 11 of 85)	intron (NM_001081330, intron 11 of 85)	34136.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	3.00127274469027	3.04420225581667	3.38423567186239	3.06415325808827	2.86987406276232	3.18901948453993	-0.467734887244551	0.497709103912767	0.833770467452658
Merged-chr4-133661096-2	chr4	133660596	133661596	+	801.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145956)	TTS (NM_001145956)	11551.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	5.00009660684976	5.14691019297913	5.37893823122429	4.16534987631368	4.21875488004446	4.86289461871393	-1.71261990669721	0.000284528556016625	0.00666527367371377
Merged-chr7-55846356-4	chr7	55845855	55846855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	4284.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.94587097942963	4.7347145923944	5.48374380127452	5.02906686286817	5.28337778168328	5.59585729669352	0.477978479476102	0.26538905345698	0.66310566258133
Merged-chr2-102839288-3	chr2	102838787	102839787	+	951.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 6 of 13)	intron (NM_001039150, intron 6 of 13)	62378.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.2123380708564	2.98002883608736	3.45925606621309	2.99953913944077	2.95243981898293	3.15783798058199	-0.830181547692542	0.225451034037669	0.620389233421734
Merged-chr1-43935320-3	chr1	43934784	43935784	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	1290.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	7.00227224670501	7.35349758837294	6.79860570252021	7.12581751602322	7.51570881576823	6.97937774747658	0.233868905693509	0.425537143184185	0.793174315317077
Merged-chr11-83741245-2	chr11	83740745	83741745	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5695.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	2.14901898371025	2.19943422322508	2.2538619477609	2.32902727010002	2.22598149950312	2.64151117825192	1.37424995777409	0.120084131789357	1
Merged-chr8-14893555-3	chr8	14893064	14894064	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	5028.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.68331557846551	6.84101678812741	7.04303492496558	6.57333727361637	6.94306415632568	6.62391684638739	-0.194144709058554	0.484488857155307	0.826929258213464
Merged-chr1-37638790-4	chr1	37638263	37639263	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	81048.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	5.96656854291685	6.21680641566055	5.70740383708945	5.40707781028939	5.38601395721503	5.31433434799818	-1.13894746685984	0.000688781179399857	0.0135106328089352
Merged-chr5-123524255-4	chr5	123523753	123524753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023232)	promoter-TSS (NM_023232)	-89.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	6.03330909238704	6.32155560554711	6.29348067635085	5.92600315008535	5.93463278626704	5.79454159400267	-0.564331892499574	0.0583608672637227	0.312188832319585
Merged-chr17-35808139-4	chr17	35807650	35808650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13563.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	6.23033181264976	6.10890378695153	6.36521051138767	6.46080780772379	6.79027005163545	6.1100168516475	0.435134144282969	0.164878283401518	0.539575548267644
Merged-chr7-44852943-2	chr7	44852443	44853443	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_026270, exon 2 of 5)	exon (NM_026270, exon 2 of 5)	2936.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	2.53160796001942	2.59484369851938	2.89978251364827	2.54839550956583	2.4214384534556	2.74124998535347	-0.605229281351524	0.450577766488161	0.808443910792592
Merged-chr6-145121115-4	chr6	145120623	145121623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	-616.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	8.31023513170303	8.37083306391818	8.00638044414237	8.25150163491364	8.5780028891086	8.07729402166159	0.115879487965951	0.639169704109536	0.897939062613691
Merged-chr5-110094512-4	chr5	110093996	110094996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5473.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	5.61970461725011	5.69100828735264	6.03646355972945	5.98743448509178	5.88075671944604	6.27468826797409	0.467304714057487	0.151161159678463	0.518506648409409
Merged-chr2-35397730-4	chr2	35397246	35398246	+	936.2416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080709)	promoter-TSS (NM_001080709)	-572.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	3.53865292610512	3.4240484302321	3.49560296273329	3.48298216740617	3.25423526423166	3.40088752354074	-0.410078473122622	0.488346725379064	0.829104641846902
Merged-chr5-142819596-2	chr5	142819096	142820096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2209.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	5.54905908969054	5.48769369404296	5.94574635529328	6.12021175278567	6.20262413283612	6.15742817665427	0.884725286139867	0.00489902228941395	0.06035098658923
Merged-chr19-55312950-2	chr19	55312450	55313450	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025883, intron 3 of 10)	MTD|LTR|ERVL-MaLR	3086.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	3.61364458352279	4.05793560304694	3.87810679710334	4.06676253170558	4.30356362979093	4.19041249858765	0.958951821376288	0.0684639419364721	0.34224006195436
Merged-chr8-11474841-2	chr8	11474341	11475341	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	RSINE1|SINE|B4	-3088.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.47716916772543	5.55526527230373	5.56056028102623	5.80791239327631	5.60380208394139	5.85514241903843	0.411161338043384	0.198430024660809	0.586749382074533
Merged-chr17-34204509-4	chr17	34204005	34205005	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	26.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	6.30932158801895	6.20245095559977	6.41386514188888	6.42166946494414	6.47620233451667	6.67405371117342	0.35428613774128	0.195470469817358	0.583125739606088
Merged-chr18-36328834-4	chr18	36328326	36329326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19798.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	5.13308402776253	5.0702731491326	5.37482690712966	5.25426151808774	5.13691479453641	5.12436197633947	-0.0310080701527843	0.931507835315908	0.984927936475838
Merged-chr5-65937125-3	chr5	65936637	65937637	+	864.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-29987.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.70065807161588	4.58772154348806	4.49826914679139	4.59382013699322	4.51817019002606	4.56561509210329	-0.111519253445704	0.788828410516509	0.949071478509777
Merged-chr15-99725504-4	chr15	99724992	99725992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183256)	promoter-TSS (NM_183256)	-126.0	NM_183256	66379.0	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	6.67237401639152	6.22338962848141	6.67091340864801	6.90006713519588	7.03115577701816	7.03004741392319	0.711400225709622	0.010125800720154	0.101293681393812
Merged-chr12-32778017-1	chr12	32777517	32778517	+	679.0	f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-42318.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	2.50379021488599	2.6443070695887	2.39521542147779	2.57629080007438	2.39464772788101	2.72652072315716	0.270650612739464	0.741290010889451	1
Merged-chr7-142399493-4	chr7	142398997	142399997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11627.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.07281825743811	7.10776682076573	7.31151941062396	7.65858240121261	7.80785144753226	7.64989823428233	0.808551680849525	0.000469864177782349	0.0100170275441747
Merged-chr10-79703887-2	chr10	79703387	79704387	+	680.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	-471.0	NM_001077184	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	4.93936566741921	4.80532091129065	5.16736835711312	5.24861310147385	4.86145353514395	5.10135781228548	0.225915046170568	0.565052908247548	0.866552670637515
Merged-chr4-95783680-2	chr4	95783180	95784180	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	183355.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.0899564448335	4.01229231385181	3.99711153114262	4.02842467189385	4.20190508981092	4.3387577328062	0.444631736394469	0.356427975790915	0.74326734997459
Merged-chr7-97336833-4	chr7	97336345	97337345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	MTE2a|LTR|ERVL-MaLR	4522.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	6.97756432925571	6.38797313502576	6.123194204179	5.5756586724412	5.24787944030363	5.45708822248923	-1.96776842626842	5.1687619697795e-08	3.99333654578842e-06
Merged-chr12-84217159-3	chr12	84216647	84217647	+	787.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1734.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.97839144492663	4.74199376178061	4.60244569242597	4.74267707396382	4.63637689890012	4.75153457334719	-0.19655959078199	0.631332227241063	0.895122791781359
Merged-chr13-99138882-2	chr13	99138382	99139382	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-45941.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.49735920026328	3.72260938066395	3.53536696144291	3.36003890090325	3.17994685999267	3.60578033673884	-0.775291229221897	0.206000181631577	0.596596871355204
Merged-chr12-85963155-2	chr12	85962655	85963655	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115886.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	4.54320309698679	4.67873752554937	4.02628451505744	3.58927319207385	3.89748714461698	3.76450511620799	-2.01774479443821	0.000381928335849517	0.00849491926473313
Merged-chr9-99087961-2	chr9	99087461	99088461	+	672.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	B3|SINE|B2	52250.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.39584566982084	3.6507144492122	3.81213763773024	3.80302624540418	3.54385540957865	3.33680093479376	-0.165091816198211	0.787071981327135	0.948693859994902
Merged-chr1-178319468-1	chr1	178318968	178319968	+	1000.0	f0_balb.idr	intron (NM_025511, intron 1 of 3)	PB1D10|SINE|Alu	315.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	7.98713544793673	7.99688439288029	7.70857735445223	7.61675644859079	7.8200094729087	7.76493109758446	-0.247869040075068	0.277350315710229	0.674551767497274
Merged-chr6-87043534-2	chr6	87043034	87044034	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013528, intron 1 of 18)	intron (NM_013528, intron 1 of 18)	688.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	5.18263816298198	4.89068833201616	4.98837352991177	5.09445379581387	5.00081742253283	4.82594249946593	-0.0941354333939345	0.806089038194294	0.954102910475772
Merged-chr11-107315326-2	chr11	107314826	107315826	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-125945.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	3.07936530531872	2.94134405155986	2.94264018469952	3.13782686611977	2.93796726274832	3.13538786346723	0.355967287331283	0.596971766284279	0.88011264230803
Merged-chr1-43475668-2	chr1	43475168	43476168	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	29917.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.35024737134269	5.13013943371274	5.29571204087841	5.19084844965448	5.32299877354381	5.55908970198277	0.19661930388178	0.580236059185264	0.87276422265422
Merged-chr10-125387794-4	chr10	125387313	125388313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58850.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.90581294143761	6.64669103538839	6.68991962654983	6.55592037745292	6.70358205309806	6.58175427969168	-0.213831611998305	0.414848631187455	0.786052851114581
Merged-chr11-32613811-3	chr11	32613221	32614221	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 15 of 18)	intron (NM_009288, intron 15 of 18)	-28834.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.75203457912056	2.56793300426727	3.17784230540956	2.55613682963638	2.62168629278586	2.92544914733896	-0.73430730267266	0.366063922107399	0.751105402903166
Merged-chr8-36613948-4	chr8	36613414	36614414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015802)	promoter-TSS (NM_015802)	29.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.80824155059441	4.84183869639013	4.91962636051098	4.77426320251477	4.5433027391875	4.36873468334275	-0.643251217090336	0.124548968797352	0.472225945306208
Merged-chr3-88607597-4	chr3	88607104	88608104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8603.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.67852721563264	6.39312324303955	6.12314007075167	6.29822608699812	6.13451117123154	5.8888733015127	-0.502478103685562	0.110908316021689	0.444841551070303
Merged-chr3-152209034-2	chr3	152208534	152209534	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356363, intron 1 of 3)	intron (NM_001356363, intron 1 of 3)	1049.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	5.50701860342326	5.45426907977772	5.05253861457699	5.53391359726911	5.29974875670519	4.96167134256018	-0.135872845925338	0.727595397622101	0.930204882969987
Merged-chr3-135424482-2	chr3	135423982	135424982	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	6.50709548814268	6.88634254524268	6.86871264302695	6.77077363140507	7.14622783482253	7.06126932465696	0.373032330165989	0.176847422268097	0.557467887031723
Merged-chr9-65539160-2	chr9	65538660	65539660	+	984.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40927.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.52182025883326	4.95608739798724	5.42011513041078	5.77973452531871	5.57861136597202	5.65216436640942	0.671553460854397	0.0658085583096443	0.334788366338279
Merged-chr1-60410079-4	chr1	60409573	60410573	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198127, intron 1 of 8)	CpG	454.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	5.01795422916353	4.6251876893615	4.7035923055241	4.9876365853134	4.64142276351098	5.06204418063467	0.228522547630807	0.589034493925131	0.876739558209816
Merged-chr1-23915600-4	chr1	23915115	23916115	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	RSINE1|SINE|B4	-5879.0	NM_001290683	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.02826574339798	3.23655709436648	3.10919063610907	3.53767483476549	3.56088412382502	3.42173364672685	1.54395769588063	0.0151899143506461	0.133875902265497
Merged-chr6-88068955-4	chr6	88068451	88069451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-15522.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	4.68977156360546	4.68142652718048	4.72845521038855	4.58061432521284	4.83751461365914	4.9736946147505	0.241560569217484	0.552174687081918	0.861546661145201
Merged-chr4-119126076-4	chr4	119125574	119126574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	17329.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.86255032268873	5.76205599928811	5.90942985709006	6.41379454037382	6.40241419957656	6.19783611138841	0.864944336753104	0.00259471585639284	0.0377251645952709
Merged-chr2-129549940-4	chr2	129549452	129550452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13350.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.29098713761464	6.15062420848047	6.07959049127469	5.95985982082315	5.98217783904334	5.87960179434691	-0.405434545848276	0.161427720328373	0.53433358871363
Merged-chr6-42353391-4	chr6	42352895	42353895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3567.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.93919843106927	6.48635793384802	6.57735283630617	6.62805404407882	6.92127808609005	6.82880267494433	0.176942250760579	0.53134617758061	0.851563538113703
Merged-chr13-117034890-4	chr13	117034404	117035404	+	635.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9388.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	6.01956924169784	5.88373888501568	5.91368752900264	6.06228011998206	6.03457187783389	6.04479897931068	0.182583324162577	0.528015974332529	0.850335859569968
Merged-chr3-90438684-3	chr3	90438172	90439172	+	693.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-5036.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	4.98774724287466	5.20272184711259	5.58599507985894	5.42984650168986	5.71782397890223	5.33272406085742	0.475234401208629	0.211035782325806	0.603411064079092
Merged-chr8-71676639-4	chr8	71676132	71677132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190830, intron 1 of 23)	CpG	249.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	6.07518909997182	6.18949546917024	6.30206225474812	6.60423771842617	6.82139887870527	6.84284967010969	0.92928138082835	0.000606098835785846	0.0122408427009875
Merged-chr9-46009851-4	chr9	46009336	46010336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	MIR|SINE|MIR	2854.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	6.42972842188506	6.07881920286522	5.90202028679999	6.2566971339296	6.40134217951337	6.38103811350572	0.300653618374554	0.3231471509138	0.71652795750241
Merged-chr7-99148596-2	chr7	99148096	99149096	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7452.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.03907820214803	3.71463323972032	4.12917293363646	4.65599966961616	4.51536651317938	4.33927799543036	1.51379647316811	0.00218284984851635	0.0329997402244456
Merged-chr11-106920157-2	chr11	106919657	106920657	+	991.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	CpG	558.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	7.17375767074199	7.18817310847194	7.35650580996095	7.29260868449215	6.94562749643551	7.36086758620947	-0.0505396743561561	0.842789562227715	0.963161613177542
Merged-chr19-55383427-3	chr19	55382926	55383926	+	917.6555179999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360432, intron 4 of 7)	intron (NM_001360432, intron 4 of 7)	67369.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	4.7942400503905	4.81075715968024	4.25994254591351	4.06429095562821	3.9290466243459	3.84487133411107	-1.91745605788212	0.000166394217121825	0.0043158759408581
Merged-chr5-140619554-4	chr5	140619038	140620038	+	935.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12197.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.4785774962381	4.61847787669976	4.6404321925506	4.60184949254156	4.18793288594294	4.74344511091624	-0.145208411627998	0.749936546595115	0.937463855381525
Merged-chr6-47813519-4	chr6	47813033	47814033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009787)	promoter-TSS (NM_009787)	-21.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	6.47581873841105	6.62769261085806	6.43752208776389	6.12248154581908	6.52682022608687	5.87456619278567	-0.484873249299588	0.125891664565542	0.474642279302592
Merged-chr11-51858820-4	chr11	51858300	51859300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1170.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	7.79882721079877	7.89253914147674	8.02488040996445	7.72231340468856	8.04398321856758	7.81258382933928	-0.0474548187951367	0.836268739600647	0.961960888484752
Merged-chr1-170855217-2	chr1	170854717	170855717	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	12554.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	5.20819268708299	5.44793346160716	5.35158316602153	5.11280026139186	5.08474348310918	5.2608810840149	-0.389678797940099	0.269999842925411	0.667007509356262
Merged-chr11-80081170-4	chr11	80080719	80081719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277106)	promoter-TSS (NM_001277106)	-228.0	NM_018776	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	7.28835156699666	7.14682591258008	7.2079200462671	7.06909832078774	7.16604620152759	7.14405862197546	-0.132435068658727	0.570977862484494	0.86930513576314
Merged-chr17-78265377-4	chr17	78264891	78265891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	65143.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.90560035444654	3.60491603929611	3.33971078031389	3.34952584848318	3.47895588255318	3.47300898473858	-0.749808064351389	0.22410058038406	0.618957456138137
Merged-chr9-70259818-2	chr9	70259308	70260308	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	52458.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	4.27567519464434	4.72675410790808	4.06252976009396	3.81183091874813	3.95130780763617	3.97818216970408	-1.35678070631223	0.00994695449201786	0.100092658044724
Merged-chr2-58496786-4	chr2	58496303	58497303	+	918.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64607.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.91313853492128	5.06052553386613	5.05071543304344	5.15204448363959	5.33971900657483	5.1155434898263	0.43127328923359	0.236588173863734	0.632808151044829
Merged-chr8-68822910-4	chr8	68822408	68823408	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027590, intron 16 of 16)	intron (NM_027590, intron 16 of 16)	28979.0	NM_001293792	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	5.58397045192632	5.82175778248708	5.93766854954951	5.62797959244671	5.79416866496734	6.02011793622316	0.0617327874438575	0.84972370835689	0.964699762930784
Merged-chr15-95961228-2	chr15	95960728	95961728	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 16 of 19)	intron (NM_175344, intron 16 of 19)	118325.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	2.50801790537044	2.77892477103207	2.88767200525683	2.74254973572325	2.57729123916231	2.95981248202615	0.170792486050564	0.827107085202817	0.959351941492659
Merged-chr8-116921686-8	chr8	116921169	116922169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028131)	promoter-TSS (NM_028131)	-71.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	7.50386186511791	7.70388077991558	7.31406920537393	7.6648675158108	7.49747715404545	7.76457085711456	0.170703001582558	0.482606963351055	0.825744076957385
Merged-chr7-126704755-4	chr7	126704258	126705258	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009898)	promoter-TSS (NM_009898)	58.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.68936290821002	4.94456651370286	5.14587773890526	4.9698455168221	4.96736726038631	4.86614061610128	0.0188314524179454	0.961977016851106	0.990694737894915
Merged-chr6-121247167-4	chr6	121246653	121247653	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	1247.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	4.11518592152381	4.31995351479187	4.16366931718501	4.53941941348421	4.2988394750326	4.6938257252725	0.795584951006424	0.0871644049971659	0.391397131089794
Merged-chr4-128805410-2	chr4	128804910	128805910	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	702.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.66720733081275	5.72965950587008	6.06662426395111	5.98847879334325	5.54049752280045	5.56377254873311	-0.194375345075919	0.572692014906196	0.869921264041146
Merged-chr11-101468859-2	chr11	101468359	101469359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009708, intron 1 of 4)	intron (NM_009708, intron 1 of 4)	684.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	2.93692606150493	2.85532801440505	2.88016224710099	2.69995381638702	2.57068291462677	2.89323094201093	-0.900239084648987	0.226518917438553	0.621481516556407
Merged-chr1-192763086-3	chr1	192762624	192763624	+	718.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	8095.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.34852644882597	2.28343183886629	2.2690699267076	2.40640066243348	2.51113870337826	2.53743341384755	1.20105612986155	0.149427895897667	1
Merged-chr2-72366176-4	chr2	72365682	72366682	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80481.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	6.43250951667649	6.73855856792282	6.5062070226082	6.99666262510436	7.15529724130782	6.56603286195456	0.579716325775077	0.0464194793278511	0.27265791584864
Merged-chr2-70964956-4	chr2	70964458	70965458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110512, exon 9 of 9)	3' UTR (NM_001110512, exon 9 of 9)	53416.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.95371244283166	8.25317566569324	7.88578379757766	8.36655236252381	8.53973524521439	7.95003928953062	0.380417095914586	0.139539412182762	0.499131433621496
Merged-chr15-58806199-2	chr15	58805699	58806699	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	17228.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.81896411243869	4.04286581513605	3.92950115380682	3.80044083535319	3.77473762152617	3.90018443360662	-0.355366752844187	0.489616153439254	0.829774723350021
Merged-chr15-25354928-4	chr15	25354438	25355438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58826.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.820082034134	6.36157864644363	6.27693078584056	6.25446213100102	6.53432711480467	5.93986117187514	-0.385298252510208	0.245021114791953	0.642381314494918
Merged-chr7-79466309-4	chr7	79465813	79466813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017462)	promoter-TSS (NM_017462)	-40.0	NM_017462	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	6.64886930698056	6.4143173131457	6.69799446316181	6.43725252781926	5.96196981581349	6.22508928506942	-0.607246295374104	0.0413181716535126	0.253933261462846
Merged-chr12-102378543-2	chr12	102378043	102379043	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61270.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.25160954793031	5.16866246723956	5.54151395424894	5.28642668561319	5.38004915633947	4.84190730368914	-0.235584916591439	0.546536345966553	0.85884385473937
Merged-chr2-174334550-2	chr2	174334050	174335050	+	829.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	4461.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	3.05314875205085	2.94029366627426	3.33996614697764	3.02631722254462	3.15578484404787	3.46076722536821	0.44657371946634	0.51348059074248	0.842597552908258
Merged-chr4-141867702-4	chr4	141867201	141868201	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	7219.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.45628541015439	4.49695847652654	4.69009877842573	4.52387380046918	4.22552098619537	4.64230961077028	-0.203024471489557	0.649537933477503	0.902192641284614
Merged-chr11-88291481-3	chr11	88290951	88291951	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_028859	74297.0	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	2.56253835678561	2.42357648797487	2.74838156304595	2.2439181150863	2.31731965502965	2.39196344271569	-1.71287777761691	0.048880178337273	1
Merged-chr11-110167859-2	chr11	110167400	110168400	+	921.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	253.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	6.56667403152198	6.64905025576099	6.53160573448663	6.63140510360753	6.43294253000627	6.62480799604993	-0.0418694164536873	0.873181488748827	0.970397726762468
Merged-chr12-113155427-3	chr12	113154942	113155942	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-979.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	6.85376783273153	6.77552386938512	7.01614191927144	6.85220588038842	6.83020197383557	6.71428535151396	-0.116206956810374	0.644167594571665	0.900067122451665
Merged-chr4-95557451-4	chr4	95556952	95557952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113412)	promoter-TSS (NM_001113412)	-55.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.97882799560242	3.81896473030616	4.06791883600236	4.75494405793326	5.14418938150747	4.52612122898451	2.36529263674284	1.29950657267224e-06	6.8306596903924e-05
Merged-chr12-99986963-1	chr12	99986463	99987463	+	811.0	f0_balb.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	22464.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.41395380128769	3.56829091506797	3.33706964680513	3.45309263218087	3.42245778322043	3.46608956724227	-0.011052797093554	0.984990260918478	0.996850685135916
Merged-chr4-10919273-4	chr4	10918790	10919790	+	724.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44792.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	3.46458600924926	3.29188278563498	3.35998602861966	3.35406601709836	3.54728018014741	3.83947571471436	0.785591455562017	0.196010241558193	0.583827914554481
Merged-chr6-97396778-4	chr6	97396274	97397274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62512.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.197752928845	7.02951113298596	6.98653709653602	7.0500745075719	7.10115549301016	7.32419595736312	0.120457986530787	0.625493969844227	0.892513881101067
Merged-chr2-84716156-1	chr2	84715656	84716656	+	873.0	f0_balb.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-992.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	6.34977944698955	6.75736481425045	6.52673149220409	6.78113933840466	7.15447000650365	6.58635845437834	0.495248622831203	0.0976030598778796	0.416650698046307
Merged-chr3-100408744-1	chr3	100408244	100409244	+	552.0	f1_balb.idr	Intergenic	RMER1A|Other|Other	-17661.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	3.75944269069019	3.42621051412373	3.60002261995732	3.89030399234136	3.72619380771824	3.87839192108153	0.757418275391163	0.173876239212354	0.553140727918843
Merged-chr15-100038662-4	chr15	100038176	100039176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159361)	promoter-TSS (NM_001159361)	12.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	8.40714962559872	8.01920107401401	7.65306772132797	7.90906960570296	7.67023991856961	7.73762550898695	-0.421183547629663	0.120654788318784	0.464595475331084
Merged-chr4-150371863-4	chr4	150371366	150372366	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	CpG	89950.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.48729045413777	4.32693802363383	4.26437514296323	4.12713590238547	3.92814260792042	3.82571614264922	-1.12212714477653	0.0227511791479987	0.175904117686924
Merged-chr5-130456704-3	chr5	130456214	130457214	+	832.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	7922.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.40556997542703	3.23766428956108	3.26659684783124	3.34847166995119	3.31674243493106	3.55639735885867	0.383100071598886	0.528837350938077	0.850585575598857
Merged-chr2-166045221-4	chr2	166044712	166045712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	52575.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.02862107580825	6.70644061211946	6.45949719774228	6.69985357397727	6.86785720711947	6.4611420331281	-0.105021197209919	0.723731128170504	0.929128417950564
Merged-chr17-31069982-2	chr17	31069482	31070482	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	12288.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.07935570746797	4.77876969691975	5.14503013671959	4.87456705569713	4.96789101395536	4.74527154415679	-0.286057547463918	0.470292860109073	0.819435206867463
Merged-chr9-37230824-3	chr9	37230330	37231330	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	22514.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	4.44669591815953	4.17613668524179	4.31842159621557	3.83940280387776	3.7384582563384	4.16694125321229	-1.17565272953624	0.0211787189735105	0.167734268338089
Merged-chr14-66867537-2	chr14	66867037	66868037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 1 of 13)	CpG	1063.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	2.77932710529813	2.76551690380711	2.87621885050932	2.69502461399229	2.68328681199621	3.00557457801659	-0.0472539544816376	0.948457214289572	0.988140911675735
Merged-chr19-4067542-2	chr19	4067042	4068042	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8095.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	3.7978209050405	3.76398457518796	3.64672395492814	3.42237138348465	3.33279082506977	3.81717156222675	-0.73365910344514	0.214290788868677	0.607446165658035
Merged-chr15-59041219-4	chr15	59040709	59041709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40817.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.23868145851459	3.76359679766286	3.73963427212352	3.83645340168417	3.67894486686919	3.70096756746201	-0.637917215010904	0.253945502424415	0.651117231535132
Merged-chr11-106034209-2	chr11	106033709	106034709	+	705.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037712)	TTS (NM_001037712)	-2663.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	3.32467328812699	3.27660048180367	3.56790236425209	4.43882844084481	4.51464031649095	5.23947757595545	5.03268332051054	1.85857804188536e-10	2.33608099258606e-08
Merged-chr7-80781729-3	chr7	80781271	80782271	+	776.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	21560.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.50447984512041	7.59670269357562	7.4112931437086	7.27825889038096	7.32947750991891	7.33758562186737	-0.288029096856796	0.203098345929905	0.593044889392741
Merged-chr1-125428636-4	chr1	125428117	125429117	+	857.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	7110.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.45938505515109	5.16441263397767	5.49296385975203	5.39812424386163	5.27036680021454	5.31916781218532	-0.0895503066935669	0.797834172509165	0.95181421173875
Merged-chr10-57712832-4	chr10	57712312	57713312	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	61831.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.46173376026865	4.30045469256301	4.17792687719923	4.17284663482423	4.07003894591031	4.19947007441974	-0.496815147322503	0.287070871283701	0.684323804399215
Merged-chr4-151861170-6	chr4	151860659	151861659	+	946.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	CpG	609.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	6.42922472128806	6.05194255072633	6.28258195276878	6.5038032437045	5.88635075017092	6.28343359522139	-0.0312206008043255	0.923468335733043	0.982699256056545
Merged-chr2-103504932-2	chr2	103504432	103505432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19779.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	5.14968516449408	5.16815119916076	5.30646689585121	5.02700428080912	5.21821141296974	5.42634891155889	0.0458645048876637	0.899296463286622	0.976569483675523
Merged-chr11-5065777-4	chr11	5065264	5066264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	-437.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	4.85018591970018	4.81784615058316	5.38166879847242	4.83173005271065	4.75519419714678	5.0606505653803	-0.323658396683409	0.439302600839064	0.801067055524026
Merged-chr19-47133284-4	chr19	47132783	47133783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133746, intron 2 of 2)	intron (NM_133746, intron 2 of 2)	5011.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	5.55952006761894	5.62696139395872	5.80228680587018	5.89544021652779	5.60511173180961	5.76423369928023	0.177830149088822	0.579545692385248	0.872571259966152
Merged-chr2-128125156-2	chr2	128124652	128125652	+	653.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-886.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.40817760754177	4.18305721996841	4.37398766191836	4.41103198948998	4.29669702712263	4.26247122801741	0.00905063650583304	0.984026013592322	0.996464361754829
Merged-chr2-30442695-3	chr2	30442207	30443207	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	26657.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	7.35695160326816	7.50997305330271	7.65647310723192	7.07686012701198	7.63957172043724	7.41603997896667	-0.155179907271333	0.558869209215956	0.864883618129129
Merged-chr7-31111780-4	chr7	31111281	31112281	+	880.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-784.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	7.0629737994992	6.83775653502382	6.62587019607888	7.14242826829388	6.86653116197181	6.84789708719929	0.149510495323791	0.582066081765869	0.873508337816738
Merged-chr1-191879668-2	chr1	191879168	191880168	+	994.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27113.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	3.83695536245876	4.06478675927524	4.0850833426789	4.35514555798326	4.16688885316991	3.66935169014353	0.295437336952203	0.593176519698685	0.878410931874355
Merged-chr11-101576185-2	chr11	101575685	101576685	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 20 of 23)	intron (NM_008676, intron 20 of 23)	-6057.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	2.38537677235119	2.48008867429715	2.63176791552462	2.44720382500283	2.17826295204526	2.52115473793701	-0.709135002027824	0.410673997653563	1
Merged-chr1-58714580-3	chr1	58714031	58715031	+	867.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_149256)	TTS (NR_149256)	1245.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.36563925448043	6.18498023200475	6.38448841418354	6.52770748154616	6.59341689026397	6.551560043722	0.40502560809892	0.12942657610313	0.481228589205873
Merged-chr4-145267900-4	chr4	145267396	145268396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21026.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.04944273184712	4.94308244933111	4.98485386171549	4.79143130325987	4.90291922201526	4.57368810038674	-0.48193834646658	0.223549760097749	0.618285804826774
Merged-chr2-73041948-4	chr2	73041453	73042453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61507.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.56160262032277	6.5589397646475	6.54052797552577	6.62525999603026	6.92429741384643	6.61714958084043	0.294259830646908	0.268106014762384	0.665252140405214
Merged-chr5-138227525-4	chr5	138227023	138228023	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 1 of 5)	URR1B|DNA|hAT-Charlie	1619.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	5.11926672209747	4.90154185002689	4.98902180364856	4.19767528389545	4.35711647400916	5.02029693626189	-1.01344809287412	0.0334151298030994	0.22311074632132
Merged-chr2-34372159-4	chr2	34371675	34372675	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-130.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	5.44991865280684	5.40907163564909	5.69658831684836	5.90825654002828	5.1722887142639	5.32944810780091	-0.0110752528445738	0.977212260419335	0.994771164142869
Merged-chr7-140941501-4	chr7	140941009	140942009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153832, exon 1 of 12)	non-coding (NR_153832, exon 1 of 12)	118.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	8.15299051851847	7.83852244418022	7.71803455421225	7.80206171051028	7.8347581485979	7.56402761941924	-0.254253258538215	0.297147458246086	0.693822137886977
Merged-chr1-52170253-4	chr1	52169760	52170760	+	766.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 14 of 17)	B3A|SINE|B2	50638.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.79300255016381	2.6595464328333	2.79050915574324	2.61768421393785	2.73608439707419	2.61353715276222	-0.47051294639378	0.530049168796168	1
Merged-chr19-44591294-4	chr19	44590797	44591797	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28443.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	3.89871510901648	3.69923604681154	3.54660401161595	3.42393480942521	3.39622560577949	3.44737096593948	-1.11265231627782	0.0557622087127386	0.30396868247026
Merged-chr1-131021142-4	chr1	131020622	131021622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 2 of 4)	intron (NM_010548, intron 2 of 4)	1277.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	5.96961414029504	5.93999625537286	5.49809688384534	6.42470874500913	6.57752839561523	6.13393611020359	0.958332735660431	0.00328561772712511	0.0450617570197175
Merged-chr7-34387927-2	chr7	34387427	34388427	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	PB1D9|SINE|Alu	1778.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	5.30703479428268	5.46986574764718	5.48461862236902	5.654656544932	5.70500601295506	5.68526369850586	0.495969968247411	0.123335024486	0.469934498836915
Merged-chr2-31715908-4	chr2	31715386	31716386	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	27349.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.68262391196033	5.5408167477714	5.44066478876162	5.43551899105497	5.64371385966144	5.05473903442138	-0.275035063983917	0.45307865514713	0.80959860708419
Merged-chr6-5292942-3	chr6	5292445	5293445	+	771.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	5428.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.94822658159181	3.74046695945742	3.79235833117402	3.67840163040333	3.51972413085888	3.86172700768053	-0.486698301409191	0.374179339648185	0.757933699438553
Merged-chr7-55852575-4	chr7	55852083	55853083	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	MTD|LTR|ERVL-MaLR	10512.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.30954843125377	5.72324030675533	5.96378225721297	6.14858741773347	6.13076046378798	6.33939002599533	0.303760141434491	0.345392415379489	0.73374724517199
Merged-chr8-83657012-4	chr8	83656535	83657535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	L2|LINE|L2	4357.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	4.59094857614095	4.68285294921628	5.03621957478707	4.93808355144375	4.98230086417365	5.52554390228338	0.848232713702232	0.0471827428756686	0.275082796328379
Merged-chr7-101348015-4	chr7	101347506	101348506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-63.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.6398212530413	5.67096837104718	5.42257349592591	5.83390985539405	5.77855334871923	5.66403068532272	0.316656732655283	0.320785547783616	0.714576061099323
Merged-chr8-68926695-4	chr8	68926162	68927162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46107.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	6.21305826084609	5.67404493765354	5.85757341001952	6.08327239710271	6.07570065680275	5.96832515214638	0.184902594317977	0.565724955999659	0.86688237163883
Merged-chr8-26066613-4	chr8	26066147	26067147	+	742.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 13 of 21)	intron (NM_207659, intron 13 of 21)	-15962.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	3.59142503590572	3.68252697990969	3.82114527621885	4.25148795326874	4.03457442440246	4.26616829382393	1.51312908994134	0.00359251030471248	0.0481051814345858
Merged-chr4-129784285-1	chr4	129783785	129784785	+	541.0	f1_balb.idr	Intergenic	B2_Mm1t|SINE|B2	-36194.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.13980805184699	3.20299001377465	3.28431719848233	3.17229807036688	3.18308908007011	3.40876853022686	0.190341840502028	0.761571797509031	0.941258867861232
Merged-chr5-31048404-7	chr5	31047912	31048912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177870)	promoter-TSS (NM_177870)	150.0	NM_001177621	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	8.5076980256718	8.64368448250935	8.39624174134884	8.3512700165233	8.54751055908143	8.15867328961343	-0.214037025211365	0.340210916712813	0.729876755390994
Merged-chr5-146750468-2	chr5	146749968	146750968	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	MER68|LTR|ERVL	44488.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.56448583838833	4.37383607716674	4.85777494564458	4.90904515086364	4.69027665232365	4.57606659077708	0.315304928229435	0.469557545879407	0.818977178978635
Merged-chr6-113642956-4	chr6	113642490	113643490	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	4523.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.46467505446796	5.50729338310731	5.76441359979515	5.58437242286124	5.40685740331535	5.77713341972927	0.0198833720134797	0.953187206984723	0.989361385177328
Merged-chr1-165673614-2	chr1	165673114	165674114	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	34480.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.01386318218369	4.33493891178218	4.47188272537628	4.2652129564706	4.08590569262535	4.19775971357147	-0.269934295057674	0.576985354031722	0.871890842261214
Merged-chr15-25604529-2	chr15	25604029	25605029	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18021.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.67275054157487	3.65471936448036	3.84918399535634	3.63666884764016	3.37358911263202	4.00817288855475	-0.116098836635833	0.844640551080675	0.96373428957366
Merged-chr10-94344735-3	chr10	94344186	94345186	+	929.1222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	32737.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.73714237084812	2.50344799396804	2.7563079696251	2.86021929503853	3.09142604984959	3.3935863379734	2.38024272596184	0.00328416845795059	0.0450515352993535
Merged-chr4-16086733-4	chr4	16086212	16087212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72824.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	4.80584634872309	4.97760339646877	4.57452295402677	4.67708295335004	4.79745712781991	4.7665509006723	-0.133812514614029	0.743567050037275	0.935677319876317
Merged-chr8-88362162-4	chr8	88361651	88362651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012047)	promoter-TSS (NM_012047)	40.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	7.40724453058288	7.3622539023578	7.27289945676884	7.63326818680529	7.32575537914456	7.13175415845827	0.0511644057743934	0.839594069633336	0.962784121274377
Merged-chr19-6976737-2	chr19	6976237	6977237	+	986.1999509999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360288)	TTS (NM_001360288)	1689.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	3.22359823485013	3.27675064021917	3.41515680290869	3.27820322168741	3.05331770368152	3.32369972132474	-0.355564385128319	0.573615794755173	0.870251558775855
Merged-chr1-150099987-4	chr1	150099483	150100483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015466)	promoter-TSS (NR_015466)	-48.0	NM_011198	19225.0	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	3.08067305374332	2.91669831122407	3.06209114907594	2.87099283929041	2.85986459572964	2.95831428469466	-0.608197712917196	0.374388150676447	0.758058822552447
Merged-chr12-84855299-4	chr12	84854813	84855813	+	938.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 2 of 34)	intron (NM_013589, intron 2 of 34)	-20489.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	5.79850304774228	5.60427015999112	6.04005974673117	5.36747215651202	5.09850818197712	5.31736386983236	-1.06270919195644	0.00228907236175374	0.0342755323154229
Merged-chr4-132572279-2	chr4	132571779	132572779	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	MT2B|LTR|ERVL	8212.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	5.67592232000579	5.35315429727089	5.27088419660893	5.32441634220243	5.24579282983816	5.0533998114611	-0.461813359765552	0.203694584124752	0.593848111693788
Merged-chr2-129315069-4	chr2	129314564	129315564	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5092.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.68560899726571	4.25473232773733	3.97381593025948	4.40217972559385	4.37973170900698	4.15386541757638	-0.0731259081463847	0.887038248875598	0.973818520404627
Merged-chr9-124023209-3	chr9	124022699	124023699	+	873.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	1228.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	7.27476824206201	7.47196198672804	6.82993793857385	5.37273069587887	5.11236538436544	5.38800633042297	-3.34475333480437	2.32087217656972e-24	3.51118421941842e-21
Merged-chr6-97402723-4	chr6	97402243	97403243	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56543.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.22584297505756	4.38439066913372	4.63097110326485	4.88925907700995	4.56436609570758	4.49269321255075	0.624121397298526	0.166918405119645	0.542435988153521
Merged-chr7-140955976-4	chr7	140955452	140956452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	9.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	7.09951143242533	6.781410882277	7.27736146605844	7.05822142742774	6.94301121092342	7.52842627429635	0.202416965671484	0.491849383710698	0.830778358974458
Merged-chr10-119062203-4	chr10	119061714	119062714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11715.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	7.43377045829736	7.49299116091656	6.91793897677519	7.27801328796912	7.44684042366689	7.36369082710878	0.0708413109516034	0.790294613792147	0.949368241827272
Merged-chr10-59230472-2	chr10	59229972	59230972	+	836.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8550.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	2.93215777790753	2.92257570031962	2.92703691375432	3.23350397521591	3.00832119407049	3.55259079928432	1.53867367147689	0.028166419698783	0.200673983243114
Merged-chr7-120843557-1	chr7	120843057	120844057	+	696.0	f0_balb.idr	promoter-TSS (NM_001267710)	promoter-TSS (NM_001267710)	-43.0	NM_001267710	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.88436220337722	4.91516418646079	4.74234614598086	4.71391584499861	4.30315804704777	4.32768948593331	-0.931852304822503	0.0321670877700013	0.217840676958043
Merged-chr3-108727623-2	chr3	108727123	108728123	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-5324.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	3.04650644334726	2.96574161711283	2.90520126214825	3.38979691808745	3.0245540730642	3.59930084453547	1.6073480755214	0.0230401561678141	0.177411230015354
Merged-chr11-100611847-4	chr11	100611384	100612384	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	8284.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	6.01847357078822	5.73337567252835	5.95962913188844	5.9464708794433	6.17430393486079	6.10968065772968	0.306004201322579	0.311534312540363	0.706536150429674
Merged-chr7-75655904-4	chr7	75655418	75656418	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-192420.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	8.06806523916359	8.37280894049032	7.72186728628112	7.70041578073759	7.92803506478481	7.52180982871315	-0.505580934115583	0.0604224060572245	0.318362271254543
Merged-chr7-121450873-1	chr7	121450373	121451373	+	735.0	f0_balb.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	58577.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	3.20849445719593	3.49948840609325	3.32514693739767	3.12126307694808	3.09504473386857	3.44991921725942	-0.51643624007546	0.42494120686712	0.792848465017231
Merged-chr14-75168694-4	chr14	75168220	75169220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	MLTR11B|LTR|ERVK	32295.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.88871224919112	5.86536502757393	5.76984851816465	5.68102501368337	5.56536714591903	5.99659726212618	-0.179054065674582	0.576513076321928	0.871585692229598
Merged-chr16-33920662-2	chr16	33920162	33921162	+	942.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	46376.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.79458354051002	4.40710272900125	4.87107810986898	4.62897925467209	4.64757532860194	4.75465749997718	-0.0560800246656357	0.895579457888809	0.975665889379756
Merged-chr1-64377333-2	chr1	64376833	64377833	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-155471.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	6.75016459469223	7.00059228343937	7.12570687992605	6.53650433867755	6.67208523577441	6.9854560232639	-0.350103749630184	0.207555149545715	0.598331793355039
Merged-chr8-109706454-2	chr8	109705954	109706954	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286393, intron 2 of 7)	intron (NM_001286393, intron 2 of 7)	435.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	4.46468441388714	4.33830723440211	4.65125646551076	4.21285089073796	4.05149364475635	4.03886806715742	-1.04570479329512	0.0263261700024125	0.192648940465058
Merged-chr1-151339981-2	chr1	151339481	151340481	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4505.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	4.68310190473037	4.91126388354554	4.7969454476788	4.44804675554535	4.64717047463236	4.93286198510516	-0.275978004992464	0.512771623713447	0.84210398297292
Merged-chr11-78262791-3	chr11	78262288	78263288	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002004, exon 2 of 39)	exon (NM_001002004, exon 2 of 39)	1034.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	5.63586858113	5.78390021844681	5.94612959330145	5.75163460033659	6.23745802782948	6.11504706454488	0.476299605162928	0.142638131371043	0.504082974522055
Merged-chr17-5496908-2	chr17	5496408	5497408	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4308.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.18767098865039	4.30187051051344	4.22554081687506	4.0724108444678	4.22753843183636	4.38001085624199	-0.0349757827636673	0.940081062293548	0.986782000249854
Merged-chr7-126396873-4	chr7	126396364	126397364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010900)	promoter-TSS (NM_010900)	-127.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	5.45861863637838	5.64927283968069	5.19734570136137	5.35812420360443	5.42701532239933	5.48390897332371	-0.0764228376488917	0.826718075802491	0.959260889561903
Merged-chr2-157399823-3	chr2	157399327	157400327	+	808.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24466.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.63993509475296	3.83115358111848	3.82265230119862	3.87088443429453	3.42629369156262	3.79221093047349	-0.202904453653307	0.721220399369314	0.928451291671431
Merged-chr2-17936699-3	chr2	17936198	17937198	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60260.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	3.29827623533046	3.73727515224492	3.40029429676539	3.15171879035258	3.48999200422677	3.63187322979481	-0.214056568157748	0.741948205946803	0.935046573868423
Merged-chr9-75541704-3	chr9	75541183	75542183	+	833.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17974.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.83182447366065	3.83290060380476	3.73741431485793	4.01589665645373	3.95379715160459	4.01175338089547	0.58001810612971	0.251720474971001	0.649173703610206
Merged-chr8-95434957-4	chr8	95434445	95435445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008187)	promoter-TSS (NM_008187)	-76.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	6.33238204935724	6.57939309281524	6.07777246445324	6.5183670527051	6.29414768791922	6.0183368862891	-0.0928083617136866	0.767844885263163	0.94270730875714
Merged-chr2-168230538-4	chr2	168230108	168231108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310084)	promoter-TSS (NM_001310084)	-14.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	8.70286792312418	8.84876213209661	8.46713612937426	8.62909562112496	8.70508840407718	8.47150282309832	-0.108318935753556	0.622112766547338	0.890944374087724
Merged-chr6-88033707-4	chr6	88033205	88034205	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	11312.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	5.53955353865257	4.86199727139355	4.91994604469213	5.51775219455104	4.72319815403516	4.86753871922521	-0.128656149490888	0.785576505863669	0.948078929885768
Merged-chr5-66015189-4	chr5	66014697	66015697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10912.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	7.56618182446333	7.06400186135793	7.47223030135868	7.23357364007099	7.21263868815006	7.22633463355933	-0.237161808945679	0.357846278955558	0.744373220152849
Merged-chr10-17485100-1	chr10	17484600	17485600	+	700.666687	f0_balb.idr	Intergenic	Intergenic	-238128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.56385253211575	3.65492676563684	3.79121745034627	3.19000392027661	3.48427095127655	3.3333852462718	-1.18706547629095	0.0537462639913833	0.297269285708257
Merged-chr9-41081089-4	chr9	41080566	41081566	+	907.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-1560.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.28696751677211	3.30479578595471	3.76796071293991	4.01066556923591	3.58378630101823	3.57806669140151	0.963744491654438	0.122568577843161	0.468388271570393
Merged-chr12-76403806-1	chr12	76403306	76404306	+	1000.0	f0_c57.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	-370.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	6.94111212840625	7.04920849414752	6.82025858819774	7.05898876589741	6.92728441352693	7.07426604292459	0.108858149159511	0.658279813247498	0.904992195604343
Merged-chr3-31110338-1	chr3	31109838	31110838	+	730.0	f0_balb.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	15280.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.27606337028755	3.16322232550077	3.27597446965175	3.37973058277056	3.1534133835335	3.50919477756441	0.44279893682422	0.480044457730958	0.824474204175932
Merged-chr17-56614609-2	chr17	56614109	56615109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018730)	TTS (NM_018730)	1214.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	4.24376520405502	4.57296972807638	4.77427368686164	4.59609341814011	4.39040637653354	4.90691960135832	0.234754457806744	0.614866404369044	0.887639829057119
Merged-chr1-58729203-2	chr1	58728703	58729703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207653, intron 3 of 9)	intron (NM_207653, intron 3 of 9)	-1349.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.40668069382704	5.21637437322545	5.36196228921609	5.19575346803998	5.18908443597744	5.53761789376779	-0.0458852944169229	0.897358100027423	0.975989045047592
Merged-chr19-29647757-4	chr19	29647279	29648279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 1 of 14)	intron (NM_001362131, intron 1 of 14)	636.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	6.16873555488448	6.05710650968462	6.45761240146279	6.28886323558078	6.1259338895548	6.27900646801068	0.00232936732948452	0.993661141370035	0.998753346328072
Merged-chr5-112950394-4	chr5	112949853	112950853	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-53991.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	6.11608184645026	6.39005656490188	6.27041891209496	6.25707394770802	6.25982135017167	5.97713870162613	-0.140433044645315	0.630852597655182	0.894912420650784
Merged-chr18-4302513-2	chr18	4302013	4303013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50440.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.84250918333412	5.56165786199982	5.0508997175463	5.82050292389103	5.49227711275564	5.30512526215774	0.0443223896465922	0.911939119189494	0.980211734893551
Merged-chr11-85843334-6	chr11	85842871	85843871	+	928.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10756.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	3.70731423562642	3.31173548651853	3.37520311190523	3.21387394529755	3.02519456911425	3.44693328801031	-0.979042608667644	0.137661218586674	0.496001739347931
Merged-chr18-39648734-2	chr18	39648234	39649234	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-124763.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.02980432261073	3.24285356916447	3.21468587326235	3.16052680856032	3.36023466429857	3.28624579631933	0.452949320059096	0.477373407051785	0.823237639056184
Merged-chr11-20333183-3	chr11	20332703	20333703	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-490.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	5.96227403012599	5.88404106533784	6.18316816619028	5.87638371893886	6.00525640003512	5.9159971672409	-0.120589112268211	0.687888724622792	0.917193226920892
Merged-chr12-84969828-2	chr12	84969328	84970328	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1058.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	5.62821403238747	6.06958335382047	5.89614256008778	6.52972982797698	6.69451083126966	6.23534311467386	1.05685140824225	0.000792471956978798	0.0150741481928805
Merged-chr11-116615941-5	chr11	116615535	116616535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8217.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	8.12828453322979	7.91190551627282	7.87510215502159	8.07417561415147	8.29116499303049	7.69323841274602	0.103683829001153	0.682467685691884	0.915096086868746
Merged-chr4-101356759-4	chr4	101356250	101357250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-502.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	8.54404629218379	8.55999288520778	8.30370155755569	8.5911455575373	8.60169707991965	8.40166496105299	0.0818657498792891	0.700360972920709	0.920919335036368
Merged-chr1-131085436-4	chr1	131084936	131085936	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	L2a|LINE|L2	12407.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.82828840787383	6.80571341988362	6.71219107752749	6.83528742691734	6.89465437182114	6.83277635930525	0.108427789404436	0.659075393304006	0.905229020277098
Merged-chr2-102948709-4	chr2	102948211	102949211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47046.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.13368988896348	4.8520988487376	4.82744718351515	4.70697680484852	4.17530082265933	4.65891853650725	-0.98818992660335	0.0273967261627755	0.197353198039323
Merged-chr15-85811358-1	chr15	85810858	85811858	+	1000.0	f1_balb.idr	intron (NM_197998, intron 1 of 4)	CpG	339.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	6.90353648863895	7.47766460167282	6.97917655490052	7.31129339588651	7.22796499780879	6.67243683061531	-0.0662051306244501	0.83135457550398	0.960444904168444
Merged-chr7-28825165-4	chr7	28824639	28825639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016772)	promoter-TSS (NM_016772)	-199.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	7.21846289758754	7.58134919216671	7.0526732424318	6.79353881207666	7.03208978263661	6.78868174345439	-0.647569214868073	0.017944853680048	0.150474189762112
Merged-chr2-155696981-1	chr2	155696481	155697481	+	660.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4597.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	4.86876826843579	4.78351487907254	4.45049506007625	4.71801076254128	4.99515612490702	4.93052555182977	0.369788183169807	0.376376291460712	0.759175760202243
Merged-chr5-117414091-4	chr5	117413457	117414457	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312914)	promoter-TSS (NM_001312914)	-45.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.61439887877057	4.5170274677156	4.60141125200425	4.04628125419555	4.29045411624153	4.14175207255023	-1.06344357755978	0.0203302374288799	0.163242880455579
Merged-chr9-118640129-3	chr9	118639635	118640635	+	770.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	33426.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.60570058427554	4.07123133812039	4.71133935175099	4.65889233795569	4.61435549280459	4.91703929887421	0.588422059158913	0.212599081280061	0.60512503641463
Merged-chr5-90699148-2	chr5	90698648	90699648	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58621.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.18662958861944	3.13471884937148	3.40884644755338	3.49186341478523	3.09976170252232	3.19847747285368	0.123979595015425	0.848726088376452	0.964368239368528
Merged-chr13-59975423-3	chr13	59974883	59975883	+	910.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54328.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	3.31698044547245	4.02845653067057	3.65994921295821	3.23187637075751	2.94363438971265	3.4653087119724	-1.83072262979462	0.010287365354873	0.102461172142561
Merged-chr13-20127705-4	chr13	20127189	20128189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37182.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.03562132331376	6.06330711186164	6.02240689027231	6.04083444416938	6.29515487357043	6.62240365115017	0.490830420451582	0.109532132687421	0.442231534604051
Merged-chr10-94360890-4	chr10	94360388	94361388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	L1M4|LINE|L1	48939.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.71555246837798	5.42267529645864	5.51590730326876	5.4825141796802	5.04769058743403	5.49328983048623	-0.411042574051362	0.256205088584026	0.653234656378111
Merged-chr18-52600701-4	chr18	52600208	52601208	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15207.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	2.02997339258193	2.04902390957668	2.23867500981035	2.29442659966665	2.23469976899686	2.37810632548408	1.45582676189617	0.107896274566352	1
Merged-chr2-112232826-4	chr2	112232319	112233319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7022.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	4.97675841979288	4.95383240875256	4.9343632275879	5.08054473606098	5.23143862530421	5.38854588231539	0.582137364483024	0.111699948945216	0.446386243579641
Merged-chr14-8099022-2	chr14	8098522	8099522	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	(TCTCTG)n|Simple_repeat|Simple_repeat	811.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	6.86207939346727	7.25536610858998	6.75246669274144	7.10704092916677	7.07376372172332	6.99104102962149	0.112884418071307	0.674662298337123	0.911852710156386
Merged-chr13-60677144-1	chr13	60676644	60677644	+	581.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	B1_Mus1|SINE|Alu	74933.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.45161964991104	4.3237645602886	4.64055597380255	4.35931600985439	4.20059568703612	4.5922061025931	-0.225958739168997	0.62056450848882	0.890213289123814
Merged-chr10-105273327-4	chr10	105272795	105273795	+	952.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 8 of 11)	intron (NM_177368, intron 8 of 11)	301184.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	3.87957812252078	3.54845562364207	3.76641921537145	3.92400023995724	3.59093762330126	3.62380802248335	-0.0531221916337395	0.925124707833832	0.983120489108249
Merged-chr2-11740650-3	chr2	11740140	11741140	+	717.016663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34928.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	5.31080449104828	5.2694822918462	5.79610683278089	5.43348371549721	5.58527206536098	5.37892059596036	0.0157738407590827	0.965259319340957	0.991840962282624
Merged-chr6-97420259-4	chr6	97419750	97420750	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39036.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.48351717216984	5.6760441420267	5.71430100874462	5.25478341967101	5.28601781369934	5.48287548470898	-0.552474551270433	0.0996462076557101	0.421009528110913
Merged-chr2-119156240-4	chr2	119155733	119156733	+	764.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033136, intron 2 of 12)	intron (NM_001033136, intron 2 of 12)	801.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	6.82270643162389	6.8128150697737	6.60923130630184	6.88387503326196	7.1530863376675	6.8468245880001	0.337522391060601	0.19575338544006	0.583438527663774
Merged-chr4-105483464-1	chr4	105482964	105483964	+	640.0	f0_balb.idr	Intergenic	Intergenic	326117.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.62198335348851	3.95742557013274	3.89663575077627	3.6920825865016	3.85943142278254	3.96511826850936	0.0260113277582983	0.961463959213628	0.99059562311323
Merged-chr7-19674755-2	chr7	19674255	19675255	+	744.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309795)	promoter-TSS (NM_001309795)	-835.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	5.67884946664626	5.74845398774156	5.60795794424512	5.6391743360339	5.4141648217667	5.67026606660915	-0.211675734985383	0.511602513973282	0.841459220847773
Merged-chr5-8863726-5	chr5	8863173	8864173	+	926.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011075, intron 26 of 27)	intron (NM_011075, intron 26 of 27)	-30048.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	4.11338506856202	4.20777484061936	3.9779858313567	3.91754174644255	3.66493859648565	3.78836058314284	-0.981334067730193	0.057389069329511	0.309178750083676
Merged-chr7-45535497-2	chr7	45534997	45535997	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 6 of 19)	B3A|SINE|B2	9167.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	4.06971518013121	4.033583006916	3.95032793212811	4.14398365434591	4.09600380171102	3.96924212417343	0.156513860262115	0.747495756278692	0.936632541920315
Merged-chr12-102747804-3	chr12	102747301	102748301	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4041.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	7.21354743399497	7.57289799350861	7.08612224907055	7.3951027635763	7.97954458817509	7.10302468397502	0.358430576319867	0.257316284442454	0.654643594321768
Merged-chr2-167774068-2	chr2	167773568	167774568	+	995.9285890000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82891.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.70803631365822	7.64981319497701	7.73473995482842	7.56669889727178	7.72581607088395	7.56216286607929	-0.103519416280933	0.63822292742052	0.897399197342002
Merged-chr10-94462918-4	chr10	94462438	94463438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-51919.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.99398290308078	8.04453355719695	7.39227924914653	7.48158209209372	7.84919135163065	7.46060416785615	-0.337871568133228	0.229470847799747	0.625063354952085
Merged-chr14-14349789-10	chr14	14349331	14350331	+	922.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 5 of 11)	intron (NM_008369, intron 5 of 11)	3336.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	5.34911097551989	4.81877255835274	5.29417641791799	5.45030532321396	5.69259840959437	5.22751342054765	0.611100167582549	0.117601253905065	0.457794860113807
Merged-chr4-44910301-3	chr4	44909794	44910794	+	974.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-71100.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	3.40852922391279	3.42308080739994	3.24064711549597	3.49262649140023	3.39012489736096	3.43009449181935	0.27378190488657	0.646204369246352	0.900938614137053
Merged-chr2-31127396-4	chr2	31126898	31127898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	RMER10A|LTR|ERVL	14610.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.69096125411504	5.6268866054318	5.72702218315105	5.96077747594667	5.66163747110065	5.88800960855657	0.284350144015566	0.365471525090045	0.750624883533713
Merged-chr19-41347516-3	chr19	41347045	41348045	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	37525.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.02857421844343	6.1942308433075	6.37692123612421	6.81908485086692	6.63241073795044	6.72398477377305	0.854913553644612	0.00189949709417434	0.0297036937064572
Merged-chr5-86174151-3	chr5	86173643	86174643	+	663.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1400.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	2.97485956164531	3.01299048757579	3.05037613071524	2.95765834547381	2.84284870089912	3.23348191336581	0.0078000173137645	0.990949593248559	0.998113069044251
Merged-chr5-107944965-4	chr5	107944478	107945478	+	750.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	L1MD1|LINE|L1	42099.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	2.85193340399842	2.67381942535749	2.92947252614044	3.14428076507475	2.96648482733501	3.0622724289015	1.16819481341074	0.0992697229439978	0.42004541385646
Merged-chr14-77032610-2	chr14	77032096	77033096	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 5 of 7)	L1MB3|LINE|L1	4021.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	4.40586740238049	4.37431218956871	4.18613553670123	4.47663004034279	4.65740064540228	4.20644559068673	0.359542808522783	0.43920191313862	0.801041444663502
Merged-chr10-96618395-4	chr10	96617913	96618913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007569, exon 2 of 2)	exon (NM_007569, exon 2 of 2)	1412.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.79061537923551	7.9064667547814	7.52881752377771	7.63505964581265	8.2311804159935	7.83532962655033	0.250604552805837	0.346614811571714	0.734734183510397
Merged-chr8-126594660-4	chr8	126594156	126595156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-14677	-1220.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.68865384851241	8.78867477718527	8.33312510260305	8.43891401259397	8.70951281741633	8.38851619741195	-0.136823989073322	0.562694454046212	0.865755360453189
Merged-chr12-34433595-3	chr12	34433098	34434098	+	968.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 5 of 27)	intron (NM_001271386, intron 5 of 27)	95291.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.64169252400435	5.76414862514776	5.76238459223985	5.51967611653769	5.80365987168528	5.87246446087295	0.0302127019713503	0.924672115430895	0.983038108928445
Merged-chr13-92337094-4	chr13	92336606	92337606	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	(CACCT)n|Simple_repeat|Simple_repeat	-17677.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	5.72651380181809	6.01820880103801	5.35140185093976	4.98817233884392	4.97352961940303	5.0685753653812	-1.44386971453642	0.000109291142219553	0.00305780005440638
Merged-chr11-116671285-2	chr11	116670785	116671785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-375.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	5.70521645060812	5.55181536193787	5.59534622281715	5.85406474137997	5.72649510695519	5.84106769253747	0.336346607859683	0.279649149944849	0.677333692015015
Merged-chr5-139386466-2	chr5	139385966	139386966	+	879.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-3438.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.1904073704693	5.31591280741248	5.81657224725412	5.19746023366038	5.07708302958214	5.61948919622707	-0.294743005097475	0.46146354518247	0.814992635038861
Merged-chr8-126931399-2	chr8	126930899	126931899	+	805.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_024214, exon 5 of 5)	3' UTR (NM_024214, exon 5 of 5)	14522.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	3.08172930617279	3.09820683781939	3.34766494514436	3.22291700149293	3.34236932947201	3.36422358051399	0.56692244746022	0.368745912240815	0.753594740654151
Merged-chr1-152541835-4	chr1	152541206	152542206	+	943.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	B1F|SINE|Alu	83511.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.88886244190525	7.14125864288964	7.0611461016558	6.80495147186602	7.08133722606375	7.00097315644867	-0.09784967347569	0.699691750037051	0.920677322048879
Merged-chr9-65360142-2	chr9	65359642	65360642	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	-918.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	6.4983240841646	6.49176357134303	6.73962894809913	6.37214967397535	6.42521641206448	6.49119379379618	-0.234767384606296	0.381042467726308	0.762958584368558
Merged-chr8-126589838-2	chr8	126589338	126590338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3598.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.72027570536947	7.94447350641297	7.415637720861	7.53734434136604	7.7259279026829	7.50483078015119	-0.177716381847558	0.480956610284491	0.824891904452147
Merged-chr5-123436956-1	chr5	123436456	123437456	+	612.0	f0_c57.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	42158.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	4.51961437266241	4.53214076458946	4.24755317949038	4.58795235712704	4.28477442832972	4.70014062727133	0.195443614169006	0.6684917998685	0.909204788456481
Merged-chr1-86398484-4	chr1	86397935	86398935	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	4.51540861200231	4.52959136962092	4.81555921599153	4.73032129468314	4.89531922076163	5.1140427989312	0.68858166965239	0.0958622010202092	0.412774472885015
Merged-chr11-120232799-4	chr11	120232292	120233292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347621)	promoter-TSS (NM_001347621)	-155.0	NM_001347621	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	3.42242060067515	3.52408983354235	3.29535092503839	3.85192728740161	4.57317809133474	3.80480748518427	2.34032104382769	0.000300518138943082	0.00697893198581524
Merged-chr4-120825784-4	chr4	120825281	120826281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277095)	promoter-TSS (NM_001277095)	-40.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	8.68905838257369	8.96993155596631	8.5645910654833	8.65634445750792	8.73725980526393	8.67046274286232	-0.0937396571309204	0.665777262466577	0.907920503949149
Merged-chr10-68058131-1	chr10	68057631	68058631	+	835.666687	f0_balb.idr	Intergenic	Charlie1|DNA|hAT-Charlie	78561.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.01734747571419	3.12857114007129	3.27934035709552	2.92250984003104	2.79538769836258	3.01438020299615	-1.10352928123562	0.110818206551319	0.444841551070303
Merged-chr16-49904530-4	chr16	49904033	49905033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 8 of 9)	Lx8|LINE|L1	48879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.75538831232156	7.00085708142812	6.95522506136062	7.01175180411536	7.32307037459004	6.69063292167634	0.214986932182956	0.448933708662883	0.807468537975475
Merged-chr1-60657244-4	chr1	60656743	60657743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89145.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	6.04789051254707	5.74660220235685	5.77628009983601	5.99699029872375	6.13619060131765	6.1221209818339	0.378866394981125	0.211501076158096	0.603945120913907
Merged-chr7-80755673-1	chr7	80755173	80756173	+	666.0	f0_balb.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	47658.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.10354151574314	4.39066660427579	4.56827531892213	3.73826256129661	3.72237421955106	4.05615817089213	-1.54340373795601	0.0032863506272293	0.0450643808487963
Merged-chr4-137871119-3	chr4	137870626	137871626	+	878.2777710000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	L2|LINE|L2	8889.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.11627232847202	4.91670252828225	4.96310940659145	4.40614606717563	4.50410542710127	4.11198466909667	-1.51093621814884	0.000801907226249836	0.0152028016591015
Merged-chr10-117376984-4	chr10	117376484	117377484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-11.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	8.21971904567517	7.84514423792779	7.69545636250071	8.22278184785137	7.9485594929906	7.85604625789675	0.10737850059251	0.67534893302405	0.912152821313949
Merged-chr15-53139053-4	chr15	53138557	53139557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	207126.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.14879457884166	7.00691802891261	6.89446262015778	6.51570887085174	6.69178645891866	6.28769548110126	-0.783418721018957	0.00406548563379034	0.0525689088759016
Merged-chr13-49242904-4	chr13	49242391	49243391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5403.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	5.31684238614726	4.97477807367089	5.10158009291602	4.89631189420233	4.75085254019514	5.06498131937488	-0.525334302644597	0.175781591551902	0.555778951622549
Merged-chr10-80098783-4	chr10	80098269	80099269	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	2418.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.61881926445845	4.70978117062296	4.84505948182798	5.40609298819192	5.53287020917897	4.95153607080661	1.30537468337559	0.00100807983945633	0.0181323621447217
Merged-chr2-68826430-1	chr2	68825930	68826930	+	564.0	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-35011.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.52887876919399	2.89349482909785	3.63625674594489	3.39079350406144	3.42226203578826	3.60626939383254	0.289643601048988	0.690243906918562	0.917766299247039
Merged-chr4-107314334-4	chr4	107313825	107314825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-38.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	5.72427831793159	5.8830119366459	5.73875329427741	5.75205978259438	5.99856542335531	5.92523384337321	0.198971787652383	0.517337035215276	0.844527792582824
Merged-chr6-51914005-1	chr6	51913505	51914505	+	602.0	f0_balb.idr	intron (NM_018773, intron 6 of 12)	ORR1F|LTR|ERVL-MaLR	98544.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	2.52648223130715	2.6985850103144	2.77005287960852	2.54154252057384	2.73206434770728	2.39153744722944	-0.552919954562471	0.50754457199938	1
Merged-chr4-129623938-4	chr4	129623449	129624449	+	955.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-41.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	7.09335560243643	6.85394619733844	7.08803572478462	7.31155616710709	7.47435693524366	7.23215338009863	0.504621272795169	0.0394039705527806	0.246526817849007
Merged-chr16-95710395-3	chr16	95709855	95710855	+	694.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 3 of 9)	RLTR17B_Mm|LTR|ERVK	7948.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	2.95969282134594	2.88081430005453	2.99993008916958	2.90945700668263	2.82525799334242	3.12850977028411	0.037705736056956	0.956484237478221	0.989887454023164
Merged-chr6-72155912-3	chr6	72155445	72156445	+	952.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-32748.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.61826314536559	4.27648313928818	4.18488084351041	4.25680143934894	3.87828865937408	4.66933421216614	-0.196375879112435	0.713040722239962	0.92535041277887
Merged-chr16-33916859-2	chr16	33916359	33917359	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	50179.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.1395519925683	5.2340241579047	5.75338992356246	5.13058846772024	5.07180193061723	5.65000239307057	-0.184702106499038	0.652098011981566	0.902896807825606
Merged-chr12-98278458-4	chr12	98277953	98278953	+	833.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9818.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.14268458002094	4.97783656802423	4.89802758810575	5.10145256983422	4.42552584207481	5.26204343046667	-0.0903180966848794	0.841328638782809	0.962909549034125
Merged-chr12-8927818-4	chr12	8927338	8928338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6531.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	6.35592022144975	6.64500435396194	6.47847869934983	6.8056360702133	7.15415964836031	6.82118836949079	0.696915768019048	0.0112590968825661	0.109355309140255
Merged-chr10-44457956-2	chr10	44457456	44458456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	792.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.39071687344241	6.62257602268874	6.69820214022748	6.42512435637059	6.63319837832176	6.50910374637719	-0.0676539122640716	0.803689066256177	0.95351077179348
Merged-chr1-170895389-2	chr1	170894889	170895889	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9849.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	2.93239602135343	2.82269363310071	3.07692634493463	3.15202556404925	3.02213065210833	3.26066629680463	0.921540335349061	0.174485008991989	0.553733580181089
Merged-chr16-3718171-4	chr16	3717662	3718662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-38.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	5.24196815304381	5.61237856441718	5.79348254744314	6.43857075473634	6.41262921969284	6.5880634141338	1.5956471647022	5.75765726063374e-07	3.33278721701696e-05
Merged-chr8-85028829-4	chr8	85028310	85029310	+	841.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	1977.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	4.96724166570721	4.95607366932212	4.92292787551259	4.98934474289394	4.90891940869408	5.31263769451712	0.255074797787702	0.505634310591017	0.838177729332582
Merged-chr11-22436418-4	chr11	22435929	22436929	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-75854.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.78361413199975	4.85763224391764	4.00910285602133	3.80137311092716	3.62921808020526	3.73140360567457	-2.62417957104939	4.89562488374477e-06	0.000217604249640296
Merged-chr17-33629392-4	chr17	33628887	33629887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026712, intron 1 of 5)	intron (NM_026712, intron 1 of 5)	295.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	6.2727119815426	6.44036435212004	6.55859598411379	6.46198518882126	6.3295657110412	6.53353076299683	0.0246672881419369	0.92845721225365	0.983802612059568
Merged-chr13-74362333-4	chr13	74361866	74362866	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168658, exon 4 of 4)	3' UTR (NM_001168658, exon 4 of 4)	1634.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	3.25898215326868	3.20652512054005	3.5361425474813	3.46088070436612	3.31457240706761	3.33763870895988	0.150993162306682	0.805826082413794	0.954003424185974
Merged-chr11-121706929-4	chr11	121706439	121707439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4512.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.27847308316143	6.36775619133516	5.82772426881576	5.83377035067749	6.14508231527728	5.69465326052418	-0.46474415880935	0.16658531596841	0.542024344100504
Merged-chr6-135175190-1	chr6	135174690	135175690	+	647.5	f0_balb.idr	Intergenic	RMER15|LTR|ERVL	-6975.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.93728948613759	4.22127357042326	3.57457783602994	3.30596407108068	3.12875621860454	3.47259834831879	-2.42963377773491	0.000208965441031658	0.00519032728876483
Merged-chr9-107338409-4	chr9	107337915	107338915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133984)	promoter-TSS (NM_133984)	-65.0	NM_133984	69536.0	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	5.67741687058136	5.84213175210297	6.09755814972459	6.02283752572123	6.0830601133975	5.49020302973684	0.0515964301368919	0.881776829508073	0.97289513266204
Merged-chr17-23771672-4	chr17	23771163	23772163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153791)	promoter-TSS (NM_153791)	-61.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	5.95489826507145	6.04923979403239	5.73473083640973	5.94425959134908	5.76447541821334	5.84886315271768	-0.137809271891129	0.654000055592286	0.903623868780893
Merged-chr16-35904581-4	chr16	35904077	35905077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33195.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	6.31714511598827	5.84886570522966	6.50361965793354	6.72365601372441	6.68253256612145	6.69320191317816	0.741731951137087	0.0145834103366084	0.130031762461263
Merged-chr3-105045418-5	chr3	105044784	105045784	+	762.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	7669.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.09583299317646	6.03846781212501	6.21781722978367	6.08097309294922	6.23097179899974	6.15424854425639	0.0792263582853922	0.780188561331258	0.945966807104547
Merged-chr13-42073461-4	chr13	42072939	42073939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	21418.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	5.58461093285755	5.21019852979671	5.05208349254973	5.93238054582904	5.88460349965785	5.43932956630552	0.872860135822504	0.0201996216590902	0.162566023697609
Merged-chr5-72868507-4	chr5	72867995	72868995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113460)	promoter-TSS (NM_001113460)	-47.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.54155686245386	6.00426938916097	5.68160343778651	4.96761148961759	4.92560203723296	4.78309694725404	-1.71877842235252	4.415969742755e-06	0.000198862181475643
Merged-chr1-165193930-4	chr1	165193445	165194445	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	CpG	488.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	6.48408844784191	6.67685963837567	6.6399854586487	6.94382755528379	7.03575735924726	6.52270549966675	0.411789023352474	0.140060935886797	0.500144629900091
Merged-chr19-4811703-4	chr19	4811220	4812220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019869)	promoter-TSS (NM_019869)	-86.0	NM_019869	56275.0	Mm.276338	NM_019869	ENSMUSG00000006456	Rbm14	1300007E16Rik|PSP2|Sytip|p16|p16K	RNA binding motif protein 14	protein-coding	8.11898820196375	8.43368698221109	8.24541691055491	8.15079113583107	8.30186550428446	8.2115943157974	-0.0699324151413336	0.74826513978355	0.936913440140693
Merged-chr13-34193543-4	chr13	34193039	34194039	+	799.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 7 of 10)	intron (NM_001033167, intron 7 of 10)	30575.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.15127763339567	4.27554943938072	3.93114421434278	4.52119296228551	4.22065877976023	4.39122567718892	0.655007024424517	0.175852631541786	0.555855712100324
Merged-chr3-52090339-6	chr3	52089802	52090802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	14704.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.77682269488666	5.78032974468409	6.16145970600934	5.97239503456786	5.72022903291427	5.87310852438409	-0.0915102054338844	0.774743963674434	0.944493464665915
Merged-chr4-107777236-1	chr4	107776736	107777736	+	701.0	f0_balb.idr	Intergenic	Intergenic	-25023.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	2.77421180140138	2.97199179036388	3.11641555873926	3.02877139686592	2.52171566097901	2.89804834207927	-0.602977354104046	0.446803437308148	0.806122541261987
Merged-chr6-17635170-4	chr6	17634661	17635661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1849.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.45920656915273	7.20061676991451	7.05435291279825	7.31148652017119	7.63079146543553	7.38065617899598	0.292348954639175	0.253978499351816	0.651117231535132
Merged-chr17-48412304-2	chr17	48411804	48412804	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 3 of 5)	B1_Mur1|SINE|Alu	1854.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	2.34473277951723	2.27657681248665	2.60047417569722	2.41358917738471	2.20881461950158	2.23277625284357	-0.815251752428694	0.350497959685267	1
Merged-chr12-70110931-3	chr12	70110490	70111490	+	958.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	639.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	5.69150390309738	5.64774766522859	5.62962629368012	5.45236375569432	5.38256699857344	4.96583203369912	-0.687212457196819	0.0527925847668988	0.294125570357155
Merged-chr9-56042610-2	chr9	56042110	56043110	+	577.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011992, exon 2 of 7)	exon (NM_011992, exon 2 of 7)	765.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	6.26228146939868	6.84902323345442	6.60223403599694	6.12305194837772	6.28655246050128	6.17357074162314	-0.647584276266847	0.0332587218409662	0.222530695315464
Merged-chr9-119982526-4	chr9	119982015	119983015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	508.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	7.35743442428462	7.33934273373501	6.83733337409537	7.39706201932881	7.67290712052523	7.30580834389484	0.390019835641903	0.154322600475963	0.523625777449901
Merged-chr2-128733135-2	chr2	128732635	128733635	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	RLTR17B_Mm|LTR|ERVK	34220.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.6628692451011	4.55063514726494	4.92643097392684	4.56166998960472	4.55044480582975	4.74341934461398	-0.230703505939833	0.583429556234716	0.874062789752135
Merged-chr11-59226427-2	chr11	59225929	59226929	+	764.5	f0_balb.idr|f0_c57.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1733.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	6.99608507505446	7.27194196786874	6.75699936746728	6.83620106576304	7.28512052416625	6.71616966561507	-0.0781523852444036	0.793918404514669	0.950531747588938
Merged-chr11-115062205-4	chr11	115061703	115062703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172050)	promoter-TSS (NM_172050)	-164.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	5.32675970793406	5.14012520290157	5.56727159907089	5.79026998174172	5.67166204292123	6.11170359751154	0.965602694615607	0.00581376710130433	0.0681805848234113
Merged-chr6-121229381-2	chr6	121228881	121229881	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16525.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	3.18380896405777	3.25172568133098	3.36740584672589	3.2078314302183	3.46835609226389	3.54311322663424	0.577922972861084	0.349573656154287	0.737620448883855
Merged-chr4-140987088-7	chr4	140986574	140987574	+	985.9387820000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029097, exon 1 of 29)	exon (NM_029097, exon 1 of 29)	201.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	7.19507089966534	7.40387271757823	7.2070958161722	7.42278939542626	7.49394763330069	7.08497240059189	0.118607582454846	0.637103298416945	0.89730854033882
Merged-chr19-18608113-3	chr19	18607609	18608609	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	23704.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.25646184223251	3.98262236850209	4.29128482330381	4.04460863603566	3.97399586973236	4.27274526794882	-0.240198867828684	0.625129417720238	0.892438339018025
Merged-chr5-99293977-4	chr5	99293469	99294469	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41042.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.76023343587671	3.59482262881949	3.9327771946282	3.42574987085992	3.34698114582615	3.38783401529606	-1.37515592756909	0.019352512054093	0.158019177633847
Merged-chr6-145275043-1	chr6	145274543	145275543	+	928.0	f1_c57bl6.idr	Intergenic	Intergenic	24491.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	5.43397967610194	5.21375411775155	5.15083423514708	4.80629430580667	4.90218412845063	5.11462842678409	-0.709935013402806	0.0579177026906138	0.31103481959634
Merged-chr18-84590398-4	chr18	84589847	84590847	+	934.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-843.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	7.40130755274622	7.49622883321925	7.34394016788941	7.35489575328229	7.71600043928568	7.27391740430759	0.0817753761824607	0.743981684086195	0.935845965321226
Merged-chr11-70409543-2	chr11	70409043	70410043	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029231, intron 1 of 16)	intron (NM_029231, intron 1 of 16)	488.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	5.52380318563777	5.53491165565951	5.58017388275818	5.54237794769915	5.69007442393059	5.55836738229149	0.11245272199223	0.724876560608493	0.929475409375828
Merged-chr8-109692921-4	chr8	109692431	109693431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	CpG	363.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	8.62239156181616	8.63601273207275	8.27951520461662	8.41256119351233	8.60751953910607	8.08600940412788	-0.185584287520863	0.450611190988326	0.808443910792592
Merged-chr9-7569161-4	chr9	7568676	7569676	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008611)	TTS (NM_008611)	-2220.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	5.51102854598818	5.50037489641868	5.39001794771022	5.58271801460241	5.56927031815329	5.70640374115955	0.269679589185034	0.40335170681286	0.77875989555314
Merged-chr6-50074916-1	chr6	50074416	50075416	+	614.0	f1_balb.idr	Intergenic	RMER3D-int|LTR|ERVK	-35325.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.44124899636161	4.7140895431234	4.44887358589902	4.0433760874421	3.84214018622399	4.00219478307395	-1.6414857871705	0.000663931594869413	0.0131440447646667
Merged-chr13-37749776-3	chr13	37749300	37750300	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.05281898042516	2.68047447198522	3.03494691183204	2.98744420878219	3.09703083132842	3.10719358020404	0.611368693493737	0.393799600971031	0.771940960060713
Merged-chr9-50462557-4	chr9	50462049	50463049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31976.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	5.62885210267445	5.8448419910756	5.82689815179142	6.11855855104554	6.0912987722499	6.29835855365474	0.694174567633854	0.0206477629529785	0.164805320378257
Merged-chr1-86486880-3	chr1	86486343	86487343	+	717.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-39714.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.84153156162574	5.93152947607468	5.94326620286269	5.93133277009122	6.03288533490081	6.04949509527644	0.176538967242563	0.545579179725582	0.858209810368924
Merged-chr6-33824235-4	chr6	33823741	33824741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-205207.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	8.19370028701475	8.39561042652728	7.82295948463582	7.98614057620603	8.26771063193187	7.7255790573972	-0.205085766492732	0.445650204242925	0.805296706011004
Merged-chr2-154372705-4	chr2	154372214	154373214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	5.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	7.11005897870856	7.15026546821101	6.96684205639973	6.98594630599608	7.09758823364738	6.83407884000198	-0.148584022999566	0.547825311971178	0.859445606128575
Merged-chr3-96747076-4	chr3	96746615	96747615	+	807.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	19504.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.0385850807534	4.27897124328103	4.12545718337821	4.32089697947311	4.20622095267593	4.37442608016421	0.389912735662383	0.40426895820761	0.77945770433258
Merged-chr2-144555383-2	chr2	144554883	144555883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-846.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	5.73439183138365	6.10528306827493	5.76375563180406	5.77506160216208	5.93697582814847	6.01892933194326	0.0432132804119171	0.891926609268605	0.974942585822634
Merged-chr7-100446492-4	chr7	100445985	100446985	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 28 of 32)	intron (NM_001017985, intron 28 of 32)	-26506.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.61345559092538	5.49456352391838	5.38848941804601	5.46206601277648	5.47878674965347	5.45203098840182	-0.0824177525309753	0.801948723531801	0.953110913034068
Merged-chr8-75151050-4	chr8	75150549	75151549	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41540.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	5.84729938699612	5.89157525651272	6.10289361990491	6.29933772505883	6.22675863769049	6.28536255877637	0.557652951262367	0.0518694881764411	0.290798512494434
Merged-chr11-100610329-2	chr11	100609829	100610829	+	864.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	9839.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	6.38769349149911	6.37263860382286	6.18753391874716	6.60542760556532	6.56029314325261	6.59202003987741	0.418006847446898	0.116625872579245	0.455981844073574
Merged-chr6-24955270-6	chr6	24954761	24955761	+	865.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	864.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	3.58398810847006	3.32856483809508	3.33733379901384	3.22315360288888	3.0250014119276	3.29525279405059	-1.00952699368067	0.115160398973165	0.453019406096781
Merged-chr17-57445252-2	chr17	57444752	57445752	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 15 of 22)	intron (NM_001355722, intron 15 of 22)	86566.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	3.20727277459952	3.15569411407327	3.52122215483511	3.19871540988428	3.25000937730091	3.63898891328181	0.283069213871847	0.662406627981964	0.906792941744266
Merged-chr12-69473115-4	chr12	69472600	69473600	+	941.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038060, intron 2 of 4)	intron (NR_038060, intron 2 of 4)	2450.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	3.22674943364809	3.20094267158482	3.41684583395541	3.39469009065265	3.20770721345437	3.14618953834714	-0.09795723915603	0.876312687322707	0.97129382175502
Merged-chr16-17921053-2	chr16	17920553	17921553	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5994.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	5.68396046127267	5.68146451208461	5.80590823048868	5.5143220382765	6.03797836506015	5.57282755136546	0.0468833665338321	0.891189750969254	0.974788579222969
Merged-chr8-60867848-7	chr8	60867330	60868330	+	912.11908	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22563.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	4.42398452307361	4.26103531545399	4.16871207908807	4.51904988832928	4.25963576013911	4.08711689238558	0.0312346362696148	0.947701251789686	0.988008807662239
Merged-chr7-141447651-4	chr7	141447145	141448145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-6.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	7.74461117823385	7.99918758952245	7.56514260052409	7.95025311204667	8.08166216414749	7.6899622174458	0.19295131805944	0.438197383184945	0.800419903410376
Merged-chr7-123226476-2	chr7	123225976	123226976	+	704.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 1 of 16)	MTD|LTR|ERVL-MaLR	11610.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	2.00882845459353	2.31031035928785	2.04843848183511	2.36556630319376	2.14206391696306	2.52423845685773	1.4960881586941	0.129032150000005	1
Merged-chr16-36067950-4	chr16	36067450	36068450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	3565.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	6.36054362239962	6.17940924413449	6.26948719986752	6.64170265541284	6.85666413675083	6.35044727085888	0.605220234472614	0.0357951153080874	0.232527125814298
Merged-chr1-191392734-3	chr1	191392241	191393241	+	813.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	4300.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	3.1172225253031	3.33549319910895	3.48521653707484	4.28015764255075	3.97673951524072	3.67691040507144	2.48218789940632	0.000101061749906646	0.00286025377082728
Merged-chr12-4159498-3	chr12	4159008	4160008	+	893.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	25355.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.53454397144196	4.68057247002999	4.85364040309105	3.99919925522045	3.99007118045634	4.55945958602346	-1.27837442451832	0.00936097322151904	0.0960921955523347
Merged-chr2-101886226-4	chr2	101885761	101886761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029635)	promoter-TSS (NM_029635)	-1.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	6.63910208265791	6.97087936871549	6.53467990666374	6.90910277398206	7.04926985113264	6.44050038031074	0.156653760838556	0.604779537936444	0.883226183914895
Merged-chr11-61469500-4	chr11	61468988	61469988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15496.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	8.42153225181893	8.3141392984921	8.16048570712419	8.35299386261456	8.65066018679561	7.92069451744722	0.064884291973882	0.804620869461959	0.953651704501661
Merged-chr9-66831133-4	chr9	66830645	66831645	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3561.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	7.49112508298603	7.77484336303981	7.59343801251689	7.41214220243663	7.52365429907512	7.48341730751542	-0.222470436484286	0.334109807147066	0.724748007849347
Merged-chr4-126024653-4	chr4	126024174	126025174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	15.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	8.23425545796512	8.39040503362008	8.31912554187276	8.53140871405332	8.98510435344705	8.36246231302132	0.479878860994857	0.0525474866478941	0.293211592609843
Merged-chr5-114827625-4	chr5	114827123	114828123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4155.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	3.97005896662494	3.78741179432027	3.74440610252098	3.64343020011338	3.65834894449701	3.76244797715976	-0.514264290369823	0.336055002461781	0.726090328603253
Merged-chr10-40316680-3	chr10	40316190	40317190	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14502.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	4.50310439290864	4.31531661560842	4.50179947681637	4.61105482875702	4.48449680199481	4.68746224283749	0.375457569399131	0.380443132868099	0.762535824051856
Merged-chr3-153262938-4	chr3	153262438	153263438	+	932.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	35711.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	5.58430846936448	5.23557409903827	5.63301323759393	5.57768712354922	5.83145138539379	5.55745443856796	0.340232364956802	0.323197539892107	0.716590673784795
Merged-chr2-91096729-4	chr2	91096243	91097243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	65.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	8.70986697595707	8.98159689255665	8.5332619323513	8.70654055199804	8.91699684536457	8.53379868705554	-0.036474742240883	0.877117322278837	0.97149375595112
Merged-chr10-24164322-4	chr10	24163815	24164815	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14998.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	7.49188908807735	7.20400116182095	7.10076475917295	7.28594943460908	7.42879070917838	7.18421402654787	0.039299813339782	0.876022119260736	0.971162730906517
Merged-chr2-103955879-4	chr2	103955391	103956391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-2104.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	4.20134612362687	3.75235007777948	3.78170194290466	3.99455381040975	3.9222244867713	4.10296817394956	0.205510603397603	0.699522599858387	0.920619136555148
Merged-chr18-77943912-2	chr18	77943412	77944412	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	B2_Mm2|SINE|B2	5445.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	4.54234080256813	4.54879776200462	4.38802119671747	4.74254242044954	4.85839253517218	5.10208092125186	0.93564207602019	0.0251702482138894	0.187837856314714
Merged-chr17-25677484-2	chr17	25676984	25677984	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39688.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	5.20181130249341	5.58066535468898	5.00587168653944	5.25934147565714	5.64889188097786	5.44595607004443	0.327336453463057	0.394311581409107	0.772269696737413
Merged-chr2-124928559-4	chr2	124928064	124929064	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139563.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	6.87695904531057	7.19472163004201	6.4058183454018	6.38822412491017	6.39918149921721	6.21129182046838	-0.853283478334137	0.00634417943315221	0.0727617480735671
Merged-chr4-125085146-4	chr4	125084682	125085682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290701)	promoter-TSS (NM_001290701)	48.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	5.51370989247112	5.68405224477102	5.95396238232826	5.68122634299839	5.23427898380983	5.57650191755443	-0.406078799132411	0.252185286614569	0.64970951645701
Merged-chr17-35780525-4	chr17	35780000	35781000	+	979.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045459, exon 3 of 3)	non-coding (NR_045459, exon 3 of 3)	8050.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.31148898585409	3.85460177288388	3.93650752781144	4.4541280531361	4.60070375063667	4.39961747672945	1.16591046995661	0.0189983687675413	0.156114583093973
Merged-chr4-133464642-2	chr4	133464143	133465143	+	895.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15490.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	5.80326452809175	5.88615122365906	5.74254220673681	4.40392147132122	4.14155313377658	4.64368238529804	-3.22785734474938	1.0536924061419e-14	2.79221776211004e-12
Merged-chr17-53478164-3	chr17	53477624	53478624	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	5.36173088659341	5.48337763903066	5.7981846820538	5.62388128629969	6.20944586506891	6.02004967232224	0.77523399729145	0.0273200069834818	0.196970387172611
Merged-chr1-171387916-2	chr1	171387409	171388409	+	721.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027893, exon 9 of 9)	3' UTR (NM_027893, exon 9 of 9)	-1051.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	5.97204723827571	5.86256609255496	5.30262022060374	5.81801140060013	5.9897015046728	5.65704450421008	0.138744822498252	0.697928097830314	0.920123730782958
Merged-chr4-136134602-2	chr4	136134102	136135102	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9220.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.79393239737566	4.77861037507282	5.15356225752599	4.60285566095232	4.94482114742399	4.77200262406699	-0.272092726022778	0.511720717960941	0.841519675193282
Merged-chr9-123510122-2	chr9	123509622	123510622	+	619.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 2 of 7)	intron (NM_013860, intron 2 of 7)	-19631.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	2.65230274007708	2.48519270483151	2.48392831932284	2.5942739160761	2.47090177541584	2.6854847535899	0.215070164938917	0.784018653484199	1
Merged-chr18-54993308-3	chr18	54992828	54993828	+	963.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	-737.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.54931143536591	4.57040310377643	4.36154063380604	4.26890196199704	4.34548919461918	4.51513385535698	-0.330035703687258	0.453396553951411	0.809761744660326
Merged-chr10-100148296-1	chr10	100147796	100148796	+	614.0	f0_c57.idr	Intergenic	Intergenic	132475.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.53289234275081	3.85882789935204	3.83129254701662	3.91002012865735	3.68714031557241	3.63891626001115	0.0142795185217539	0.979507562644818	0.995255032086493
Merged-chr2-143847100-4	chr2	143846597	143847597	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 3 of 7)	LTR16E1|LTR|ERVL	16076.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	3.31486962101989	3.13958625643133	3.61783289844234	3.23933561173219	2.89638970063529	3.38518293831637	-0.736153505054161	0.288769613305511	0.686124851873233
Merged-chr13-22040428-3	chr13	22039927	22040927	+	822.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175656)	TTS (NM_175656)	935.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	5.5945055837101	5.79542887392636	6.1249240441347	6.23841262660326	6.2499051405893	6.10064091737778	0.620707960409998	0.0476950600166091	0.276650661033617
Merged-chr1-170174334-4	chr1	170173864	170174864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	600.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	7.74095365643263	7.81977393485099	7.43772402616663	7.76361543501872	7.73610124089436	7.35947899535909	-0.0627739207888404	0.803810340830717	0.953557286986578
Merged-chr8-70755967-4	chr8	70755456	70756456	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009001, exon 2 of 5)	exon (NM_009001, exon 2 of 5)	1277.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	5.93116556200949	5.66107863988208	5.56595310215011	5.50355991653108	5.13259250252165	5.14576142851437	-0.881451200161232	0.0132170903454341	0.122122779860272
Merged-chr11-44476617-4	chr11	44476113	44477113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6065.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	3.9888905815773	4.10024053846059	4.12672026364431	3.8637557781536	4.11688531202551	3.95567379143763	-0.238529808339325	0.631322792278073	0.895122791781359
Merged-chr11-97436104-4	chr11	97435652	97436652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14008.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	8.83285511104062	8.88505168208658	8.52342167877638	8.29251295451457	8.34567244156194	8.12746033375634	-0.692450537915	0.00174752731853553	0.0278506518139637
Merged-chr6-50559038-2	chr6	50558538	50559538	+	949.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7436.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	4.12324550531784	4.16867644542244	4.47860143280146	4.38252715965628	4.54226298029682	4.8036452456378	0.834627561974746	0.0711400594315086	0.349837375442467
Merged-chr5-140419341-4	chr5	140418837	140419837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	32.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	7.37441479484416	7.34113872137212	7.52111004747592	7.70898663818563	7.43853931461794	7.60652665484418	0.258438502943788	0.266410159445902	0.664166899200562
Merged-chr6-97454625-3	chr6	97454093	97455093	+	717.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4693.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.58847484398909	6.53896976435396	6.71023484918878	6.51199617434332	6.63170244142729	6.93922096008947	0.140566052770468	0.606446208108624	0.884135965313494
Merged-chr2-152398188-4	chr2	152397675	152398675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-129.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	4.89659625710614	4.45492085352031	4.48486202340898	4.95049013534037	4.59735692349398	4.80115144877196	0.352189368429202	0.423642677863994	0.792082736807957
Merged-chr6-17727672-1	chr6	17727172	17728172	+	651.0	f0_balb.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-15920.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.08107251028873	3.20558810562266	3.20155673084182	3.27130888517586	2.94831699994378	3.48777553662692	0.349645349331316	0.603818076986711	0.882837513989345
Merged-chr3-34019976-4	chr3	34019471	34020471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113188)	promoter-TSS (NM_001113188)	-108.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	7.76588274977023	7.79004906834841	7.55336205735929	7.60943416931236	7.66233720545079	7.71276680570055	-0.0757978534818091	0.733670064565651	0.932175155100531
Merged-chr3-8998205-1	chr3	8997705	8998705	+	594.5	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5999.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.90403714487123	4.93854424582203	5.01109475839682	4.8165778802879	4.98429293693848	4.85951605470915	-0.118980785103479	0.753800980873555	0.938570691167124
Merged-chr7-113186185-2	chr7	113185685	113186685	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21280.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	3.48714978689503	3.57654982133911	3.58482460799807	3.60472715661941	3.33140338286175	3.70591162022245	-0.00307752699154243	0.995782923520092	0.998961028701257
Merged-chr7-44897760-3	chr7	44897289	44898289	+	890.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027376, intron 5 of 10)	intron (NM_027376, intron 5 of 10)	1710.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	2.42204466367971	2.46372951101917	2.565549620378	2.69959407604654	2.51102007329196	2.82239938962668	1.14170998438278	0.149001613901453	1
Merged-chr11-117878999-4	chr11	117878514	117879514	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5488.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	7.2003891851453	7.0978172205547	7.01997970495618	7.08871500040215	6.9876762071013	6.32289855548583	-0.388259848197672	0.197905216481441	0.586043439320662
Merged-chr14-70175444-4	chr14	70174945	70175945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	1370.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	6.69065879122739	6.50630758066942	6.5747925288915	6.88767350800999	6.91443608305177	7.03462789937315	0.546443614995339	0.030622174648954	0.211606684245219
Merged-chr12-111537108-2	chr12	111536608	111537608	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-993.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	6.12564920773535	6.02148369162543	6.12081351038032	6.01325859555032	5.97060890371522	5.80319007615513	-0.25878049206096	0.37646651547025	0.75924731735054
Merged-chr3-30995831-4	chr3	30995355	30996355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	84.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	6.89575660749438	7.02923661752552	6.81219882635545	6.90080814103097	7.02406669497844	6.60613263991709	-0.0814754494173941	0.758573971746721	0.940237180588619
Merged-chr12-17776826-2	chr12	17776326	17777326	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86017.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.19623339279367	4.1870335186058	4.34111066302539	4.59418444018193	4.57359909400354	4.53678376090985	0.86112270627019	0.0479211801567315	0.277540583175424
Merged-chr17-46782609-4	chr17	46782076	46783076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	80.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	6.13902143948669	6.10366315149839	6.40089452514492	6.08325473283555	6.15901568469337	6.17210470325665	-0.123357019043454	0.667744250165002	0.908813236401378
Merged-chr2-164876453-1	chr2	164875953	164876953	+	654.0	f1_balb.idr	Intergenic	Intergenic	-2915.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	3.783615319182	3.73779721454987	3.90949867859241	3.66190219322731	3.89817134898324	3.72782152873529	-0.111195650911145	0.834880647664905	0.96138272464184
Merged-chr5-66087207-4	chr5	66086710	66087710	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	10969.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.46429928655474	6.69493655656322	6.60905412686109	6.57310235001855	6.85827501675788	6.6346395513536	0.172169926809941	0.521236174807157	0.84693755135567
Merged-chr3-136165459-2	chr3	136164956	136165956	+	590.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	160610.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.12935140491181	3.40906074354565	3.45346905597159	3.23072070482297	3.1648949377556	3.47132472391866	-0.185848304413187	0.770059085912987	0.943310056383255
Merged-chr3-95517515-5	chr3	95516903	95517903	+	861.659973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9383.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	3.73258561293118	3.47122388353409	3.91399923485874	3.91241545399887	3.67328397364594	4.02810880106197	0.522047781758156	0.352861391916464	0.740346269752136
Merged-chr13-91599796-3	chr13	91599284	91600284	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	MTC|LTR|ERVL-MaLR	138687.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	2.61719447076757	2.50517505995425	2.98706033908369	2.41569812741993	2.32467820369984	2.71984755990065	-1.26874441901581	0.1399880078527	0.500025673938934
Merged-chr1-180835384-4	chr1	180834892	180835892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15759.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	6.62957162839728	6.72429274248823	6.53076641565254	6.4267913072951	6.61790328691046	6.75311454229415	-0.0537582614286313	0.840505198411842	0.962819298477451
Merged-chr15-80707210-4	chr15	80706714	80707714	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	3.94899000757354	4.15260106633652	3.97465802618871	4.13739839906173	4.11801492314785	4.14108127936351	0.283844026808216	0.556498143021199	0.863603167403937
Merged-chr6-53064305-4	chr6	53063796	53064796	+	840.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	4328.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.81814900696274	3.00154072047648	3.1252711795049	3.10289492068673	3.01441651872265	3.14014695508587	0.46169586857431	0.495327794935852	0.832479653417003
Merged-chr7-30194051-4	chr7	30193534	30194534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009795, exon 2 of 11)	exon (NM_009795, exon 2 of 11)	1119.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	6.04058920572397	6.04858049074157	6.08658448571314	6.62548411485531	6.7318373786204	6.41692050211109	0.906119556949959	0.0010405121935747	0.0185592580070662
Merged-chr7-88243966-2	chr7	88243466	88244466	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-34119.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.1648565502492	7.23252663322674	7.038117018794	7.38272144990754	7.781576351494	7.40025007451507	0.578539395190191	0.0219686249787756	0.171882026068073
Merged-chr19-29371059-2	chr19	29370559	29371559	+	998.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	3621.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	5.66892130948668	5.9711245160409	6.01798397397869	6.136632515509	6.65992387087453	6.57447921256835	0.990657545511795	0.00177348394653936	0.0281510973337748
Merged-chr5-100579004-2	chr5	100578504	100579504	+	692.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6799.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.19657948712863	3.1422351854088	3.13127059084565	3.33262941100455	3.10265680056935	3.20394637824539	0.237625407687137	0.70848022902763	0.923708659245088
Merged-chr17-28432232-4	chr17	28431745	28432745	+	982.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	MER90a|LTR|ERV1	53904.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	4.9191462464636	4.65151238851024	4.90450547091872	4.83160180050245	4.75095450523736	5.07066100744083	0.122332768695778	0.760374574617537	0.94072272518104
Merged-chr2-34944345-2	chr2	34943845	34944845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	17427.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	6.5140464229609	6.40062527434319	6.1980927733613	5.86129005034533	5.78510011310054	5.78420882845039	-0.98256322993601	0.000774236399731054	0.0148064036655531
Merged-chr7-25649938-4	chr7	25649420	25650420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	8841.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	5.25546621375218	5.29012357813523	5.84903093714901	5.21508344022006	5.26339107027811	5.00733287288698	-0.608764925457768	0.117596760569073	0.457794860113807
Merged-chr9-65201671-4	chr9	65201180	65202180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13010.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	7.33701896950184	7.4154511845771	6.80995435028787	7.20279634843026	7.40517857377241	6.78615730852856	-0.0846932188359185	0.779977954491306	0.945949149660645
Merged-chr14-27355804-3	chr14	27355300	27356300	+	642.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5589.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.07451366822335	6.93650989370086	6.89340936051996	7.12316299250149	7.07422992836736	7.22411616527885	0.248173413501888	0.303323190949769	0.699902971652469
Merged-chr11-3932072-4	chr11	3931556	3932556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015749)	promoter-TSS (NM_015749)	-12.0	NM_015749	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	5.92673378625983	5.72941428937861	6.25680196481635	5.92354231728098	6.01307891067432	6.20123407174201	0.119774787108593	0.708112867415649	0.923620645882265
Merged-chr19-5117997-2	chr19	5117497	5118497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045528, intron 1 of 15)	CpG	411.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	4.38042086465603	4.2095830858058	4.85586578717523	4.40143808036348	4.39914428807876	4.43750943889667	-0.218182194173455	0.645040526832652	0.900402236225432
Merged-chr5-91960684-2	chr5	91960184	91961184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026557, intron 1 of 8)	intron (NM_026557, intron 1 of 8)	1872.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	5.2315894181509	4.84764463381768	5.37133153633446	5.40214854199636	5.18812938903975	5.00902375450464	0.111426435880831	0.776161444774976	0.94480820353868
Merged-chr4-147425623-2	chr4	147425123	147426123	+	740.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L2|LINE|L2	-127654.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.74883879640277	3.83329409802589	3.5587582791975	3.66303042318659	3.61902206023177	3.98543910075166	0.107111559714268	0.848329521111232	0.964356989789491
Merged-chr10-84549301-4	chr10	84548803	84549803	+	954.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040658, exon 3 of 4)	non-coding (NR_040658, exon 3 of 4)	4035.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	5.26926369963032	5.35351933954613	5.4762200265902	5.38911481039674	5.41031853886997	5.33049241865542	0.0347472079365338	0.917897400659853	0.981747877135909
Merged-chr2-142858636-2	chr2	142858136	142859136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42828.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.68144487173228	4.6775564776845	4.47698429934435	4.49038929981165	4.62504973464148	4.31360899300071	-0.312118688527142	0.472962994408513	0.82059937526051
Merged-chr5-72188308-4	chr5	72187808	72188808	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15021.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.04111954046007	4.02733222587313	4.30023315112064	3.97723320397713	3.95031194172846	3.90818015741734	-0.512137758272314	0.301828534746142	0.698499477656988
Merged-chr6-38808449-3	chr6	38807950	38808950	+	722.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	28861.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.70462491324792	4.96292514181942	5.08933546297637	4.65710695626305	4.80689769020954	5.08893898758683	-0.149273320969754	0.715867688010172	0.92647595514209
Merged-chr7-135768776-4	chr7	135768269	135769269	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52390.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.77644438902747	5.01492922146342	5.06321125998312	5.46494750449433	5.20704927013204	5.62613364910391	0.984864558649795	0.00889355859801077	0.0927918775953956
Merged-chr5-117120012-4	chr5	117119504	117120504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199685)	promoter-TSS (NM_001199685)	-125.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	6.63561849293455	6.62995690846774	6.72382239342175	6.54452614785001	6.72505711090801	6.63888893425866	-0.0300358956780361	0.906669053395474	0.978788026699313
Merged-chr17-57290385-5	chr17	57289893	57290893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11293.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.51428686187845	7.57438564799589	7.68099652328891	7.40126405729289	7.53539241808388	7.24561565097822	-0.264906974276198	0.255843895685918	0.652813826195457
Merged-chr16-35765538-4	chr16	35765040	35766040	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MER57-int|LTR|ERV1	3816.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	6.32354484395264	5.63412445401556	6.20997956603406	5.93490917689963	5.32468995429288	5.72979560247819	-0.71453380355228	0.0581266839416622	0.311476372837315
Merged-chr11-82889927-2	chr11	82889427	82890427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277941, intron 2 of 8)	intron (NM_001277941, intron 2 of 8)	697.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	5.65276311475122	6.2771173141784	6.30288996710565	5.7668015934899	5.7418270643009	5.49013060299937	-0.756542831230323	0.0324150825578911	0.218821530867841
Merged-chr19-18631403-4	chr19	18630907	18631907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	406.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	8.17266073622041	8.3873569715559	8.24727757793921	7.78226954953868	8.13274553222665	8.40798948640352	-0.200215387489773	0.423255513212091	0.791868419997774
Merged-chr7-75786194-4	chr7	75785702	75786702	+	827.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-62136.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.17237271887626	5.20367294432048	5.55177757863514	5.04981689698683	5.2082673040736	5.39582605522753	-0.180587116498732	0.624509025459038	0.89205968496773
Merged-chr17-48318154-2	chr17	48317654	48318654	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	1992.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	4.92668006796349	5.31649980941414	5.58279662985867	5.55186364951007	5.41944122560478	5.42334511158407	0.341176256237623	0.363276530276891	0.748928756256771
Merged-chr3-98046579-4	chr3	98046090	98047090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	MIR3|SINE|MIR	33052.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.41543156934388	6.53001361436833	6.45054058537597	6.44425536003778	6.79092730237376	6.39659652068755	0.163349704536702	0.560104593788572	0.865168135946323
Merged-chr9-75433434-2	chr9	75432934	75433934	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8090.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	5.76473015241544	5.55684632263976	5.58807271934487	5.75500680683444	5.71213069824988	5.80926146448554	0.207007042855531	0.509298531001199	0.84026772146894
Merged-chr2-79742155-4	chr2	79741657	79742657	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	34377.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	2.83980599048678	2.9394294024129	2.94132373889512	2.98194719291629	2.55665439962233	3.01413576105672	-0.205478531361909	0.787197883747614	0.948718549121005
Merged-chr1-155083581-4	chr1	155083067	155084067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-303.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.29742488079703	5.85219062960015	5.58544938131374	6.08986421813373	5.94411692090203	5.45673173146044	-0.156594244904281	0.67718495830264	0.912699165331091
Merged-chr15-100053421-2	chr15	100052921	100053921	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	14757.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.88455720047147	3.57841719591235	3.81932550391129	3.75106635988116	3.86175392698848	4.28960333986733	0.663519926085721	0.233191633941286	0.629641306045157
Merged-chr14-105499676-2	chr14	105499176	105500176	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	888.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	2.47954291836692	2.54822087638757	2.5850046538517	2.582286944729	2.52899881875941	2.89697795455831	0.766320364952661	0.328296906118329	1
Merged-chr11-51584745-4	chr11	51584266	51585266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	9.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	8.62052900595867	9.00281257324586	8.54603070550387	8.4919594272252	8.65428243993236	8.37464695918774	-0.314945435320005	0.179391808946532	0.560927196979559
Merged-chr12-84337461-4	chr12	84336974	84337974	+	792.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144833, intron 8 of 11)	intron (NM_144833, intron 8 of 11)	20615.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	2.97001264278427	2.76428268860324	3.19740711870251	2.93227002917282	2.74634520565054	2.92956350046875	-0.548446925028509	0.448570798618016	0.807277523678988
Merged-chr2-157153429-4	chr2	157152943	157153943	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 19 of 21)	intron (NM_011249, intron 19 of 21)	-18221.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	4.95237098116659	4.98461072946874	5.1301257529051	4.66670778566431	4.49061358602047	4.57187544458069	-1.02110664886064	0.0104391784361574	0.10351843157142
Merged-chr4-134098049-2	chr4	134097544	134098544	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2971.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	7.24364462522046	7.26633909979843	7.19518902479627	7.6897039462114	8.0909160009981	7.82290425811577	0.942320320180152	7.81190612651189e-05	0.0023013042493106
Merged-chr11-53774261-4	chr11	53773772	53774772	+	855.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 6 of 9)	intron (NM_001159393, intron 6 of 9)	3799.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.91453130623497	5.18986729949967	5.02955518645146	5.46410613883411	5.49415566655661	5.4810594669195	0.857171573066541	0.0149803611080654	0.132618990007438
Merged-chr2-91237713-6	chr2	91237257	91238257	+	888.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028119)	promoter-TSS (NM_028119)	611.0	NR_015464	606735.0	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	5.8865499742536	5.90998685244116	6.2023871191957	5.92565608495636	5.91229803580599	6.24276035126369	0.0489337932772514	0.874663271146292	0.970754540400126
Merged-chr11-115643521-4	chr11	115643042	115644042	+	834.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008163)	TTS (NM_008163)	-15247.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.94432647436603	4.37180018774585	4.80259296893401	5.13093188512665	4.86463979260959	5.11402457594528	0.685544059939156	0.109901229624955	0.443184138539948
Merged-chr1-192932040-4	chr1	192931540	192932540	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 5 of 8)	intron (NM_001301370, intron 5 of 8)	-76288.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	4.10927757158053	4.08303854979628	4.39009916040102	4.33922158816892	4.50134652068086	4.65260101429639	0.814070003471851	0.0771207772677325	0.366065327687923
Merged-chr4-75297050-3	chr4	75296552	75297552	+	700.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18760.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.46476560790771	3.65173500931106	3.90908917533883	3.98506287018027	4.00771263645406	4.07093818158585	1.09394696981433	0.0433403813655744	0.26151315827895
Merged-chr1-69684456-2	chr1	69683956	69684956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011770, intron 1 of 7)	intron (NM_011770, intron 1 of 7)	1504.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	2.21200005357655	2.23940647883304	2.3475149572054	2.23163344797747	2.07895822475836	2.01825784229347	-1.11024246737498	0.228981139897547	1
Merged-chr2-18202050-1	chr2	18201550	18202550	+	561.0	f0_balb.idr	intron (NM_010804, intron 16 of 22)	intron (NM_010804, intron 16 of 22)	137465.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	2.85199034947503	2.97569504245989	2.95258364500062	2.72147077239314	2.83543372208353	3.02436696166171	-0.32060533939079	0.650937602055453	0.902735752871093
Merged-chr4-116221385-5	chr4	116220967	116221967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355584)	promoter-TSS (NM_001355584)	51.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	7.08473356838643	7.290217921479	7.18145930395662	7.47591542210777	7.60052119092282	7.15070198414778	0.360942281954936	0.152638341048067	0.520906040600753
Merged-chr5-65389827-3	chr5	65389308	65390308	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011292, intron 4 of 7)	intron (NM_011292, intron 4 of 7)	1623.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	4.9798226944928	4.60146033886377	4.65484863922606	4.57844637578102	4.70709624310775	4.63949240986555	-0.27164554976799	0.517498966672367	0.844596316789407
Merged-chr2-165792922-3	chr2	165792422	165793422	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252585, exon 19 of 22)	exon (NM_001252585, exon 19 of 22)	65251.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.63744763248214	3.66400206368681	4.10061167157716	3.96845184935844	3.72968261863948	4.40807655099841	0.745557253537193	0.197703988327935	0.585816672731807
Merged-chr10-121641554-4	chr10	121640852	121641852	+	871.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177335)	promoter-TSS (NM_177335)	-349.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	1.9038773070485	1.87092099061393	2.02818500727966	1.76638604606109	1.70980128224478	1.6920303431537	-2.04015611615008	0.060602483801508	1
Merged-chr12-55642546-4	chr12	55642049	55643049	+	995.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	43632.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	3.59030115150732	3.81794844699408	3.73006804042509	3.74230303636437	3.57870522044259	3.99199878750407	0.183108500047901	0.74173800944905	0.934945994271166
Merged-chr12-108795290-4	chr12	108794753	108795753	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	1942.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.95371506155209	7.33769786332874	7.02256582467456	7.04591985488717	7.33111474354179	6.92539432148077	0.00182462506359585	0.994622790909815	0.998961028701257
Merged-chr19-42129740-2	chr19	42129240	42130240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-747.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	7.01737430380732	7.09568356590193	6.96888401687077	6.4636664122547	6.53788976082088	6.39371856110907	-0.874548035957587	0.000540849426858022	0.0111614581125998
Merged-chr8-106151252-4	chr8	106150747	106151747	+	894.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	893.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	8.49104292969948	8.75481105522375	8.34913384989633	8.61081858047571	9.0431130738764	8.17886031711534	0.168983210352279	0.550339948524471	0.860699816966477
Merged-chr9-75050180-2	chr9	75049680	75050680	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	12448.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	3.04549152754894	3.10564417665935	2.9034438200417	3.12686960448683	2.82158971757384	3.37886730672553	0.440474008602869	0.539418329080668	0.855893677201889
Merged-chr17-44101067-4	chr17	44100554	44101554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357997, intron 3 of 3)	intron (NM_001357997, intron 3 of 3)	4754.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	5.6014494884296	5.56349259019471	5.73657301259276	6.36007911862895	6.44621738898476	6.33592842151888	1.31231654912324	5.89698373646081e-06	0.000254644304483569
Merged-chr17-3205133-3	chr17	3204634	3205634	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90162.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	3.07461625477759	3.09564798022102	2.90664767000785	2.9375129747867	2.79843015905405	3.09959015657713	-0.412645402002604	0.553673111995438	0.862411686688813
Merged-chr15-76765960-4	chr15	76765455	76766455	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-42110.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	3.4694621887233	3.32787337085129	3.54443265642636	3.22070514717412	2.92684012519309	3.29387256952674	-1.24223456299764	0.0597412383668797	0.316399271977043
Merged-chr1-154006258-4	chr1	154005736	154006736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	106307.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.94399292181249	5.91800379780171	5.57865170996159	5.34874465276191	5.487209052494	5.80069257709564	-0.52170198993544	0.125689345855638	0.474301999544486
Merged-chr9-95858526-4	chr9	95857998	95858998	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073361)	promoter-TSS (NR_073361)	-616.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	6.75318238507304	6.85946242307188	6.5968659893119	6.83933893742413	7.09793478341108	6.52886216673266	0.170968939920041	0.547167222392149	0.859256588783723
Merged-chr16-96082531-4	chr16	96082043	96083043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-115.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	8.4554021339621	8.33482755627566	8.02839326090264	8.03989537126436	7.70416508348718	7.74974646803109	-0.636589248658982	0.00852737003580248	0.0901561171624277
Merged-chr7-43665973-2	chr7	43665473	43666473	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-5812.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	5.55201090374696	5.16529317512369	5.61125063707527	5.82306710299115	5.73313993547536	5.5909787253562	0.512810026742944	0.13510327984481	0.491246010720459
Merged-chr17-13659361-4	chr17	13658915	13659915	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-101126.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	5.45867605253905	5.93249486457482	6.0024974202734	6.03819379081181	6.16516040399787	6.01852945351588	0.464715367559663	0.154555440299635	0.523877774629424
Merged-chr18-24227847-4	chr18	24227346	24228346	+	712.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	ORR1B1-int|LTR|ERVL-MaLR	21852.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	3.25303150114064	2.99804187030228	3.1595577533927	3.26838850283454	2.97102475141388	3.23173159911567	0.0791564745491199	0.905172042286911	0.97825170530197
Merged-chr4-137609443-3	chr4	137608948	137609948	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	15276.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	5.23262180459721	4.97091861797976	5.62924718397067	5.1906992595736	4.90493862060665	5.66626538955197	-0.0294313975957793	0.945478547012465	0.987909250703712
Merged-chr4-6388694-4	chr4	6388191	6389191	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23011.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.18339005939688	4.69991477517896	4.46245945936038	4.72362645343655	5.1336718852564	4.78095785050692	1.00448707231961	0.0276219584488145	0.198295146819378
Merged-chr1-40081231-4	chr1	40080723	40081723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037980, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-3491.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	4.38276848003306	3.93974581901213	3.9389809967155	4.2133243878362	4.02947400272615	4.11045784298033	0.0166698700017239	0.973945960698532	0.99417402315897
Merged-chr15-95796396-2	chr15	95795896	95796896	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	5553.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.66533727193215	5.61402275301215	6.00302873941725	5.76471521771036	5.71952090839206	5.76070174479074	-0.0224856718188259	0.944038981238162	0.987523976011917
Merged-chr6-145802193-1	chr6	145801693	145802693	+	757.75	f0_balb.idr	Intergenic	Intergenic	-6190.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	7.7578810213538	7.87181480950495	7.08602394374995	6.82439623704388	6.86493880731684	6.62314539795157	-1.26342464100444	2.0049018406621e-05	0.000731683650692157
Merged-chr11-69997337-4	chr11	69996841	69997841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291127)	promoter-TSS (NM_001291127)	-121.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	7.03362427975592	6.74308932677673	7.08209827555835	7.26775651909594	7.15478262205878	7.46100431354253	0.510457951485138	0.0468868127994937	0.27413748413413
Merged-chr11-113565802-4	chr11	113565295	113566295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166503)	promoter-TSS (NM_001166503)	20.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	3.94302751191715	3.57471606207832	3.79083072231265	3.66782957785735	3.49853794897217	3.65364704975663	-0.589433877829589	0.293918158915736	0.690457148203017
Merged-chr10-67271863-4	chr10	67271363	67272363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 2 of 3)	intron (NM_001036293, intron 2 of 3)	13418.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	6.68853048230909	6.89304442155848	6.43018459207968	6.25039486564935	6.4636506606846	6.00780728293942	-0.685532248587693	0.0237711660648399	0.181052838816208
Merged-chr16-62786792-4	chr16	62786284	62787284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178925)	promoter-TSS (NM_178925)	-68.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	7.31370228028563	7.46377391446223	7.39333041837818	7.48861545681168	7.66132017481632	7.37400997111404	0.188783468823323	0.418776517476894	0.788755230826602
Merged-chr2-44504489-4	chr2	44503993	44504993	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	357129.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	3.19041860083475	2.99291169967201	2.96719990893481	3.10064102579402	3.24486703458418	3.33278513506826	0.730822276209532	0.269756555378022	0.66686579973798
Merged-chr17-69223653-4	chr17	69223153	69224153	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53553.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	6.63420351466483	6.8067272730177	6.51834846149355	6.72905124473207	6.74857384400418	6.32339335340959	-0.0608536514761046	0.829229384985341	0.959992746554529
Merged-chr19-6299678-4	chr19	6299168	6300168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-6789.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	8.44457960557984	8.14320623055696	8.11471877833505	8.43895285487768	8.46142569601408	8.25786329803599	0.2035996064886	0.362099202410995	0.747675323428227
Merged-chr19-47407445-2	chr19	47406945	47407945	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	56966.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.83620595666515	3.71517099961929	3.74108714913732	4.3518816986587	3.72660333469093	4.06723761650878	0.929251054286011	0.091933496890168	0.403852406686004
Merged-chr2-74578976-4	chr2	74578482	74579482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027133)	promoter-TSS (NM_027133)	-34.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	4.63792313596008	4.64661885867118	4.50387575995086	4.76628134055534	4.56008355006343	4.81006491290957	0.251231474380538	0.543832779735493	0.857551302506722
Merged-chr15-94688664-4	chr15	94688172	94689172	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59487.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	5.58238480239732	5.12150618564464	5.20833890137593	5.94153870456023	5.9439548989183	5.75835201340023	1.04255725572108	0.00266791331242622	0.0385134855829911
Merged-chr5-137871795-4	chr5	137871304	137872304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024932)	promoter-TSS (NM_001024932)	-46.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	5.56577416505137	5.5529991514043	5.81507576292547	5.71160570533281	5.47985629112357	5.70290595064313	-0.022655979879007	0.944743672017489	0.98786315338489
Merged-chr9-25514391-2	chr9	25513891	25514891	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	32794.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	2.43184915481304	2.42729762590744	2.69699632508025	2.50394537692623	2.25835817679526	2.39601248662391	-0.822831411673277	0.326526028582257	1
Merged-chr15-27785410-3	chr15	27784900	27785900	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-103858.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.13353520750405	3.89897459544997	4.11409764820845	3.76597104389308	3.76492263693132	4.34878216148166	-0.211236383775751	0.698825084811696	0.920452394037037
Merged-chr14-26640043-4	chr14	26639518	26640518	+	744.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1884.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	6.07685825897494	6.14065403887428	5.42790911789202	6.33706658124776	6.33318429234288	6.2172255708811	0.612046566890508	0.0719949944012106	0.352365125235923
Merged-chr7-80200137-3	chr7	80199613	80200613	+	984.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	1672.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.83572636642521	4.55000042187045	4.33775085633233	4.6494546586365	4.55486772203898	4.31009502259279	-0.197537427503547	0.665273006850686	0.907762144972922
Merged-chr12-111691426-4	chr12	111690925	111691925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13320.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	4.89741133037162	4.54918435142962	4.95163414102917	4.81740255689496	5.01808583156755	5.01601060646165	0.333775229158186	0.408180180424568	0.781964738517462
Merged-chr10-96435330-4	chr10	96434815	96435815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181686.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.80956671231191	5.07958463154964	4.88068403738656	4.97321330190483	4.9704755465909	4.90877266075546	0.0444107120648184	0.907479231746218	0.978939051225517
Merged-chr7-84272470-4	chr7	84271985	84272985	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007488, intron 12 of 18)	intron (NM_007488, intron 12 of 18)	-120592.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	2.63421430206688	2.71363145145331	2.95942782126362	2.95765665318558	3.05023100161997	3.08933077209501	1.31981265996254	0.0694614045162974	0.344847030606635
Merged-chr15-57924261-4	chr15	57923770	57924770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	L1M2|LINE|L1	12071.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.97040972911151	7.08817679083326	6.81340178185636	7.10281369077719	7.50913729780135	7.01942583032092	0.409964355950032	0.130290621848574	0.48249766761863
Merged-chr18-5097446-4	chr18	5096932	5097932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 24 of 35)	exon (NM_153153, exon 24 of 35)	50843.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	5.72890310504987	5.53074111090427	5.3272788482511	4.87924173079812	4.70641694791158	4.68251679140228	-1.64570550345979	1.45465697060809e-05	0.000553954678308273
Merged-chr6-131264372-4	chr6	131263874	131264874	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17012.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	3.47671180134134	3.53679822069124	3.54066992064761	4.06865510496268	3.68717126609433	3.97370799866183	1.33550307465658	0.0172001434429927	0.146039748531075
Merged-chr13-5803801-4	chr13	5803304	5804304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54288.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	9.11724484658543	9.45350306853162	8.62600114350592	8.78956549780294	9.27032319358326	8.51476099613978	-0.288173162496279	0.340090251443772	0.729693139478955
Merged-chr15-75678440-4	chr15	75677935	75678935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028404, intron 1 of 13)	intron (NM_028404, intron 1 of 13)	365.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	7.60727012334462	7.90146705959492	7.22732635828612	7.40690855030783	7.45903459775108	6.9687265759996	-0.456601477466887	0.11570686605364	0.454078183565836
Merged-chr7-63936479-4	chr7	63935951	63936951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	2464.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	7.06236372102734	6.76424830840783	6.85649022290928	7.1118680017338	6.99639559335188	6.94379255371441	0.181136086085001	0.473220159219039	0.820796984658325
Merged-chr4-136505968-4	chr4	136505468	136506468	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	MTC|LTR|ERVL-MaLR	36207.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	5.70602433187099	5.88224766120359	5.81302131342471	4.90613663725077	5.26187009899805	5.65275603671649	-0.952803669081037	0.0107258876420462	0.105544623883202
Merged-chr6-34177087-4	chr6	34176584	34177584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021435)	promoter-TSS (NM_021435)	-30.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	6.37978998253674	6.75040943334119	6.36697459843045	6.07699045315716	6.06878429267833	6.18475526263079	-0.682533177498469	0.0188310070813382	0.155306813085934
Merged-chr12-80113818-3	chr12	80113309	80114309	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-796.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.72017320042451	7.35020202661002	7.62490767632741	7.79051608190419	7.78811472452553	7.9157006247596	0.371733059966665	0.112822799100291	0.44859556876461
Merged-chr4-123016582-4	chr4	123016087	123017087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025873)	promoter-TSS (NM_025873)	-6.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	5.59890366833544	5.63519826975905	5.42856864894959	5.39269281675413	5.57581190699375	5.36715622432836	-0.203936004390461	0.540376573482668	0.85632302227606
Merged-chr18-36765315-2	chr18	36764815	36765815	+	747.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173383, exon 3 of 4)	exon (NM_173383, exon 3 of 4)	899.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	2.45784713169146	2.59597487861723	2.60421908021097	2.43545273485072	2.38082733943411	2.42434042398308	-0.879871378208211	0.273625177637262	1
Merged-chr7-30424547-2	chr7	30424095	30425095	+	684.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_172142, intron 3 of 10)	B1F|SINE|Alu	1320.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	3.04380998469407	3.08082682886263	2.93813560784075	3.23373263144341	2.91366827044586	3.40387528037536	0.742748168678457	0.286209728927122	0.683472010443741
Merged-chr2-67378768-1	chr2	67378268	67379268	+	601.5	f0_balb.idr	Intergenic	Intergenic	-67234.0	NM_001083919	241431.0	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	2.96696926610593	2.70989055970055	2.93981709511219	2.79556449750175	2.60230881854629	2.83330430158376	-0.685366335196599	0.355612087036433	0.742472851181279
Merged-chr9-24506530-2	chr9	24506030	24507030	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3390.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	4.09301110127868	4.23784342696378	4.70164832561845	4.46990427163991	4.4073120192662	4.86824239876278	0.576219736069441	0.239546710171191	0.636469662373399
Merged-chr1-118472710-4	chr1	118472228	118473228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-13463.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	4.95059253696225	5.06231313690727	4.71449272538291	4.75481123240612	4.83154415834409	4.82129848063685	-0.277073126978868	0.481941347688915	0.82522727772513
Merged-chr9-18293277-5	chr9	18292635	18293635	+	854.0150150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025844, intron 1 of 10)	intron (NM_025844, intron 1 of 10)	868.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	5.98972676240226	6.63279345355536	6.27104415639103	6.66270496076379	6.8814826537607	6.24639034765818	0.486359231969836	0.146661273795649	0.510944199882279
Merged-chr10-41477323-4	chr10	41476832	41477832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-678.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	7.69798930289849	7.68108601604195	7.31905156630918	7.41988494852724	7.60991758511978	7.20578200617241	-0.224364839722516	0.380946680303982	0.762907083873258
Merged-chr11-49984134-4	chr11	49983649	49984649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-41182.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	6.01155245097045	6.17593951442554	6.07724960216369	6.54904590775149	6.73573138273828	6.27012501987363	0.747120865601106	0.0103269093979203	0.102698873811659
Merged-chr1-51498676-4	chr1	51498151	51499151	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-20252.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.7751327313016	5.02944370584655	5.35760741432693	5.1492055534691	5.17300462228304	5.11225588754227	0.17511614815188	0.652883847451776	0.903027303548785
Merged-chr19-34193346-4	chr19	34192800	34193800	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360717, exon 1 of 12)	5' UTR (NM_001360717, exon 1 of 12)	366.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	7.61761406405863	8.03169767320771	7.60388822216176	8.39007991797923	8.68849266292599	7.78511224288105	0.815257764254188	0.00643322005767046	0.0735211084577079
Merged-chr10-63384544-2	chr10	63384044	63385044	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	B1_Mus1|SINE|Alu	-2019.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	2.30019401854601	2.15389551675301	2.17973192808339	2.49483534173514	2.40982970361012	2.76918214510581	2.35978133420027	0.0112893968273607	1
Merged-chr10-17726402-2	chr10	17725902	17726902	+	893.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010828)	TTS (NM_010828)	3174.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.28964547429743	4.03720948044909	4.26490285659687	4.1689373993333	4.25467495047847	4.33214341088108	0.143877030547754	0.758021568296595	0.940045956799095
Merged-chr16-35765942-2	chr16	35765441	35766441	+	812.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	B4A|SINE|B4	3415.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.70067019320441	5.4617855576371	5.77187525188369	5.32975748763599	5.10545957628575	5.37627825145297	-0.734380790548449	0.0336758096390002	0.224275393664313
Merged-chr15-100638990-2	chr15	100638490	100639490	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2050.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	4.77173839818719	4.6580698376988	5.0571443735948	5.08551177110725	4.91166702938982	5.15298908719112	0.482105314198592	0.221599389378185	0.616406799915158
Merged-chr5-134313658-4	chr5	134313164	134314164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359066, intron 1 of 32)	CpG	1096.0	NM_001359063	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	6.76703231855074	6.7443276966877	6.77332494524601	6.81001458351548	6.30980651896063	6.34370569962273	-0.396812338291281	0.16522838941471	0.54001097346129
Merged-chr5-139735400-2	chr5	139734900	139735900	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	933.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.51113028055792	5.54596166311166	5.21765571240359	6.24504412426491	6.38085123108826	5.65182458806785	1.2475872098056	0.00056059445453479	0.011491979150759
Merged-chr18-76326600-3	chr18	76326099	76327099	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64154.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	3.43342977628977	3.3164572372937	3.5330578913584	3.37211540674172	2.81094329352378	3.21969933389034	-1.11664712813713	0.118953855849694	0.461021248053436
Merged-chr10-80387783-4	chr10	80387289	80388289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-138.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	6.48848962753623	6.3114444736398	6.19434619256996	6.33992186856064	6.2442749344408	6.02765032578844	-0.208848143113362	0.469866225837575	0.819154980713479
Merged-chr19-4441563-3	chr19	4441128	4442128	+	728.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045989, intron 1 of 4)	intron (NR_045989, intron 1 of 4)	2069.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	3.36115599120163	3.04611520337409	3.14386515572462	2.89817484432913	2.78786490199297	3.10016373655431	-1.23093664838577	0.0810796541641875	0.376750760244246
Merged-chr6-89338855-4	chr6	89338353	89339353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	23760.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.31943746360209	4.15482628625072	4.27579810209391	4.43978447992979	4.19971244610066	4.05503270443071	-0.0130502198523483	0.978008175959794	0.994994154947079
Merged-chr12-8517583-2	chr12	8517079	8518079	+	942.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17570.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.47938537003238	3.33372427912271	3.37881909662213	3.79778399579982	3.61819584106939	3.87361568492838	1.2921374260219	0.02529299629699	0.188329273904245
Merged-chr7-112023499-7	chr7	112023018	112024018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177249)	promoter-TSS (NM_177249)	12.0	NM_177249	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	7.75107454895807	7.94015950277863	7.47195800181788	7.93548472339259	7.71911555493771	7.64974300160513	0.0464796016519411	0.850619526454137	0.964981271430729
Merged-chr7-92669097-7	chr7	92668563	92669563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	849.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	8.02093203907222	8.68191599030137	8.1720093122092	8.08412843728137	8.28677092566356	8.14657765549638	-0.214288350720578	0.411400666646889	0.783877099438722
Merged-chr11-77442849-4	chr11	77442350	77443350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-21063.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	6.69906139962802	6.45364131809372	6.34128499049282	6.55142163858667	6.65268904719549	6.11707585690479	-0.0623030596978642	0.836740552072332	0.962001762335242
Merged-chr3-145116993-2	chr3	145116493	145117493	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-1596.0	NM_001162539	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	2.48374152423037	2.47878676933189	2.57468610500734	2.51022255492737	2.34126958934706	2.70884501506416	0.0679257073209996	0.932805267738783	1
Merged-chr5-4758136-4	chr5	4757638	4758638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021457)	promoter-TSS (NM_021457)	78.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.34388378544517	4.52635827680233	3.98163830524699	3.94194687441434	3.65021791586823	4.10262107057312	-1.18848323996256	0.0269327518617509	0.195437147492332
Merged-chr1-161974613-3	chr1	161974057	161975057	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	5079.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	2.70296635995028	3.00547856375987	2.78128802216361	2.86164652583761	2.6831028549918	2.97597003781605	0.00678052930479882	0.992689337034516	0.998523796268552
Merged-chr8-35495569-4	chr8	35495060	35496060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-27.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	7.15704738485691	7.28541781801693	7.30113534231058	7.28705925634626	7.45328940373939	7.35839284086054	0.183529353418499	0.427949421249521	0.79478410196054
Merged-chr11-103103675-2	chr11	103103199	103104199	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025988, intron 3 of 10)	intron (NM_025988, intron 3 of 10)	2011.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	3.67626027252893	3.84473258805504	3.59547645865919	3.87410029619939	3.7332858980697	3.97555655191861	0.460018813283598	0.394425359656668	0.772347100141483
Merged-chr4-63815868-4	chr4	63815376	63816376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	45408.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	5.59101728123523	6.07932198687298	5.79368975801396	5.82070963342741	6.0278475287851	5.7508407025137	0.0670766053477884	0.839546252386968	0.962784121274377
Merged-chr10-117063466-2	chr10	117062966	117063966	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-91.0	NM_001358767	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	7.35512794923279	7.6786045276284	7.45677281079929	7.19126200206405	7.4602363999913	7.22375636388804	-0.298981502957147	0.226382108930765	0.621328050925588
Merged-chr1-87645856-2	chr1	87645356	87646356	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	25544.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.22629668387064	4.92879316421847	5.05161082033794	4.89038737291172	5.01880488873624	5.52948692601545	0.185017010350188	0.648655311387895	0.901893237722341
Merged-chr15-95798849-3	chr15	95798369	95799369	+	796.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8026.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.2717630804274	6.42757002368689	6.7489688430468	6.46398848152201	6.72684520438965	6.51898747087407	0.149782872380446	0.603661881983446	0.882779111121936
Merged-chr11-94162243-2	chr11	94161743	94162743	+	955.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49211.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.42911608599513	4.53725371127306	4.33588360164083	3.81652484152113	4.12509279504821	3.97214141653061	-1.26540764514185	0.0103662778389366	0.103041123691582
Merged-chr8-120745452-4	chr8	120744952	120745952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6813.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.57317713460415	6.14069800664716	6.70676485666771	6.50848882990617	6.13429194487904	6.24128459443421	-0.302860024961098	0.332902972816437	0.723927708416112
Merged-chr7-133154129-4	chr7	133153645	133154645	+	883.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25894.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	2.78731003433922	2.58824420225638	2.66065739974432	2.74547936625059	2.57286768004307	2.79647065765387	0.117537714455816	0.876056055892903	1
Merged-chr4-109257792-4	chr4	109257285	109258285	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22153.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	3.74413937782004	3.52448727623759	3.61075794305841	3.71645882046215	3.39994330805243	3.92838818227985	0.205364518168692	0.726268696999755	0.929763581417168
Merged-chr3-106486196-5	chr3	106485690	106486690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033207)	promoter-TSS (NR_033207)	150.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	7.00667909144239	6.79735439485208	6.85942288132768	6.50708562547932	6.62343820780743	6.41779812129346	-0.574446744852148	0.0274427302154315	0.19745446785355
Merged-chr14-101516258-3	chr14	101515755	101516755	+	937.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	92936.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.6360389645873	5.3017370088257	4.97172705407718	4.91014657589707	4.9499449652276	4.79669720208637	-0.938325709571902	0.0192826070053558	0.15758731949616
Merged-chr15-50650030-4	chr15	50649506	50650506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	239043.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.11473893298403	5.95179273140764	6.0254368004854	6.29432104276398	6.45979967102115	6.25898633528872	0.533200958625272	0.0597268377186824	0.316363276650081
Merged-chr7-90033442-2	chr7	90032942	90033942	+	707.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4283.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.91033037184593	8.36797383523874	7.87899901967796	7.9736033554575	8.25442207870184	8.12254017427717	0.0633766540023035	0.799570952071752	0.952263864378888
Merged-chr6-145247304-4	chr6	145246797	145247797	+	919.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2934.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	4.16780444078092	4.46009820835725	4.42612049575154	4.83543580006548	4.66034875682674	4.66111337681028	0.901481273400506	0.0378832755130145	0.240728965775616
Merged-chr14-45329706-4	chr14	45329207	45330207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025959)	promoter-TSS (NM_025959)	-117.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	6.55834715573964	6.53781342195414	6.40869505063399	6.53911380531548	6.46050905846997	6.44956114206313	-0.0392895753698764	0.880951702363135	0.97262624933271
Merged-chr18-68301016-1	chr18	68300516	68301516	+	1000.0	f0_c57.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	596.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	7.02641858592743	7.41239059542313	7.04136274625049	7.16708053401978	7.27399338463228	6.78767400391399	-0.11332395028805	0.683438279929065	0.915437828512898
Merged-chr4-116558434-2	chr4	116557934	116558934	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029868, intron 1 of 11)	intron (NM_029868, intron 1 of 11)	707.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	6.51166562627129	6.69791658130266	6.69874635519401	6.72366288097076	6.65480207717666	6.69411198187379	0.0843538448115536	0.742036254063257	0.935102057855142
Merged-chr5-117147707-1	chr5	117147207	117148207	+	860.0	f1_balb.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	14119.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.70033848551509	5.70419271503694	5.02044896895752	4.68129103466565	4.49577427264226	4.7216630086945	-1.91549484136865	3.95452076700805e-06	0.000180398993410749
Merged-chr19-36919700-4	chr19	36919173	36920173	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028263)	promoter-TSS (NM_028263)	-74.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	4.7992117441285	5.02411395123641	4.7333046028129	5.64154283554243	5.15133829042379	4.84492715333195	0.83051802499636	0.0521445872215098	0.291835217495291
Merged-chr8-106574851-2	chr8	106574351	106575351	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12292.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	3.23312289356366	3.01518492316011	3.05296199257164	3.06203609559269	2.98274413412647	3.1830724011246	-0.146773253350383	0.824634273038481	0.958596193929081
Merged-chr7-67425852-4	chr7	67425361	67426361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53003.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.40358029532609	6.18863675830336	6.45889372140226	5.98468160700042	5.79219333505227	6.09528071768229	-0.675971100135137	0.0222253693202141	0.173141890309556
Merged-chr8-60983826-4	chr8	60983327	60984327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	-516.0	NM_173874	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	7.67320150488338	7.7932809222523	7.52006747617486	7.42096275967022	7.62139759217281	7.29206617342998	-0.308024311245827	0.198886407131392	0.587343866831168
Merged-chr11-23307243-2	chr11	23306743	23307743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	CpG-1781	348.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	6.44147962030822	5.95613321746923	5.81272272559675	6.49137583927834	5.86897516941887	6.07435391707515	0.107344878261708	0.763366021645623	0.941793063578371
Merged-chr10-44698184-3	chr10	44697686	44698686	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239438.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.18613093127362	4.4251944386369	4.47315475764862	4.75320474660384	4.54556216522118	4.45440027389032	0.577790280582048	0.192033791582275	0.578982090368067
Merged-chr11-115167142-1	chr11	115166642	115167642	+	739.5	f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	3801.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.12890303416712	2.90822215931085	2.90651437842101	2.93734240054451	2.93014145639478	3.09900988547749	-0.00718588451848111	0.991643796434498	0.998326662880324
Merged-chr13-30625648-2	chr13	30625148	30626148	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	10605.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	5.13674850900703	5.36197129104384	5.33964730563773	5.31787497142167	5.45629146575711	5.72778503807843	0.433348583087207	0.219040697471241	0.613151837012179
Merged-chr7-39449444-4	chr7	39448968	39449968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-50.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	5.72552377259449	5.81160561924735	5.76627782815448	6.06282497009304	5.95222716656781	5.72143588306098	0.282624761871691	0.358515328319388	0.74482243657584
Merged-chr14-45005929-4	chr14	45005439	45006439	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17828.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.19484924019512	3.8073844121437	4.30071039263075	3.86279960843929	3.65151731638482	4.01923577628701	-0.80784169794569	0.136231952247464	0.493146752362964
Merged-chr8-107587786-1	chr8	107587286	107588286	+	698.0	f0_c57.idr	intron (NM_010817, intron 1 of 6)	intron (NM_010817, intron 1 of 6)	696.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	6.65904717720208	7.38463113050195	6.5734241430386	6.74473065177766	6.93980880470586	6.83193377042352	-0.148693558959876	0.643637400896224	0.89991566161065
Merged-chr3-87906188-4	chr3	87905695	87906695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-126.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	7.36937211087615	7.23376987207582	6.96941845483061	7.33367141867092	6.86279151332318	7.09556024070006	-0.149089863327729	0.582899590195451	0.873826743013405
Merged-chr14-60273529-4	chr14	60273002	60274002	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8297.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	6.3828232356556	6.44757489997435	6.58024230777395	6.36828811298445	6.42174236191381	6.9550678976906	0.209388576233267	0.486213627163011	0.827728041593793
Merged-chr19-17181583-2	chr19	17181083	17182083	+	615.224976	f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 11 of 19)	ORR1B2|LTR|ERVL-MaLR	157922.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.85399944366807	5.26069988185098	4.94345124877877	4.59220314017581	4.86479109815843	5.00793589737113	-0.465183045589298	0.25888211449124	0.656419520434759
Merged-chr7-67951780-4	chr7	67951254	67952254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	-503.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	6.28455812442994	5.95462220411767	6.03866680141531	5.82523626679292	5.32999148151711	5.26101667130527	-1.07852864299733	0.00222579113602647	0.033510361436128
Merged-chr17-10343890-2	chr17	10343390	10344390	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19288.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.42603936571329	4.3172270112022	4.47310882318337	4.07008938199965	4.06314124484703	4.37521829403102	-0.641932682395985	0.16766507514251	0.543689617009274
Merged-chr19-55658761-4	chr19	55658251	55659251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	43453.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.56850546585795	7.30455298810846	7.09069107302693	6.81573051098231	6.96647394829963	6.92876701389772	-0.65982162485116	0.0108826047576202	0.106657217511433
Merged-chr7-109541838-3	chr7	109541286	109542286	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 6 of 19)	intron (NM_001001326, intron 6 of 19)	21654.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	3.13171479842352	3.23922127771824	2.80842914203934	3.01256940396638	2.88443370946497	3.07367532554637	-0.404276651986764	0.571634896278969	0.869547320544841
Merged-chr18-4068841-3	chr18	4068360	4069360	+	682.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96972.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	2.93267198906506	2.94683639287538	2.85192847614902	3.07502946024941	2.96428459573911	3.22078446859701	0.793970253774322	0.245238605239475	0.642381314494918
Merged-chr5-137883529-3	chr5	137883041	137884041	+	961.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11783.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	5.93816177190114	5.92619541343921	5.86093634529744	5.88261735137888	6.03855886953928	6.2684280892313	0.267259715811859	0.375976721503186	0.758951282467405
Merged-chr13-41432501-4	chr13	41432002	41433002	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	54858.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.85711320608963	4.88558963803558	4.8350343501624	4.63377590682884	4.55997945082256	4.66859397693704	-0.568225715185499	0.151009878484007	0.518260671020714
Merged-chr6-145855869-4	chr6	145855363	145856363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9557.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	3.46826693489353	3.48593009708653	3.41855980753615	3.06340854178321	3.08556953330867	3.08178008681846	-1.63319726608678	0.0113177324326945	0.10978807048658
Merged-chr4-9641164-4	chr4	9640655	9641655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2562.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.65444256025268	5.11077598948991	5.07932395574147	5.98334990874979	5.92155326184677	5.66921965881052	1.01725051204611	0.00636482961216483	0.0729483116210759
Merged-chr17-86301410-4	chr17	86300934	86301934	+	804.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-14256.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	4.74094019802389	4.85922883092623	4.79534838004217	4.47383721279174	4.37860880841071	4.45718418724309	-0.888612350382393	0.0314808848822866	0.214956628039168
Merged-chr10-127194697-3	chr10	127194227	127195227	+	868.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045715)	promoter-TSS (NR_045715)	-522.0	NR_045715	100038591.0	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	-	RIKEN cDNA F420014N23 gene	ncRNA	4.18112345334231	4.48656315494507	4.14332990358819	3.71012578880295	3.682905943479	3.694217633165	-1.82741492495822	0.00055380359403112	0.0113836189358057
Merged-chr10-117397348-4	chr10	117396827	117397827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-20354.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	5.31144450376678	5.11182343685459	5.01814349904528	5.07866917814974	4.8350073028933	4.93621980961908	-0.443640688959692	0.239558075141436	0.636475774837748
Merged-chr2-166190005-3	chr2	166189477	166190477	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-34294.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.76372802527959	4.37655479604804	4.8313863025377	4.31064189292306	4.00374891043184	4.44227888931139	-1.0543721969551	0.0272878127748556	0.196814431090816
Merged-chr18-4309059-2	chr18	4308559	4309559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	43894.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	2.15152507627666	2.16508236836284	2.45326218663235	2.37853135292042	2.19725808803629	2.46534205280087	0.592547903900798	0.499202568036688	1
Merged-chr10-20311054-2	chr10	20310554	20311554	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1415.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	5.61387150369806	5.87321284987147	5.79385175127627	5.52254096931822	5.9446964128278	5.39993554810391	-0.18632435176088	0.5944479711183	0.87905784425982
Merged-chr10-96751725-4	chr10	96751210	96752210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134709.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.83197152520318	3.64813471875189	3.42813727995139	3.2233658000608	3.08800673887531	3.71273863806759	-1.04804903758161	0.118886806938041	0.460944663888006
Merged-chr16-22008835-2	chr16	22008335	22009335	+	873.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-649.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	5.50116380123833	5.46510106526647	4.91404126197618	5.30065634845037	5.27000844535834	4.71977785644836	-0.39345492626936	0.356120358984134	0.743030662747037
Merged-chr6-17589426-2	chr6	17588915	17589915	+	835.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47595.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.09520377720375	3.35704145588951	2.96239928114646	3.19968075809398	3.37490670997216	3.28277113863447	0.547559162569936	0.415672272566604	0.78656116488557
Merged-chr15-36606041-2	chr15	36605541	36606541	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2932.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	3.60216599734537	3.71951281054832	4.03330959007076	3.95853382958083	4.18293586960936	4.23349898195984	1.043295021252	0.0485156704025316	0.279456377389405
Merged-chr16-32167767-2	chr16	32167267	32168267	+	686.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2173.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	4.67968981730756	4.67538741186001	5.03912875659274	4.6100126428711	5.01158603460169	4.78743221563035	0.053067441978069	0.899753568863266	0.976696214864058
Merged-chr9-49120176-4	chr9	49119665	49120665	+	842.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17386.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	3.13015705142972	3.07605325683007	3.55752579335027	3.05253768286434	2.95811050335035	3.03859909064239	-1.0841937633371	0.114283933299556	0.451514055457453
Merged-chr6-115361115-4	chr6	115360644	115361644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308352)	promoter-TSS (NM_001308352)	0.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	7.17494987433351	6.84043557302928	6.3044041419046	6.97799934292583	6.49770519129906	6.27699001013367	-0.323550883368418	0.358517404166799	0.74482243657584
Merged-chr9-106230153-4	chr9	106229632	106230632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7534.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	6.79111382250895	6.5652308272092	6.4862480692785	6.89014521347751	6.8684634530772	6.7672339110286	0.34189482006285	0.189574016052493	0.575492422581279
Merged-chr7-30421713-4	chr7	30421255	30422255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	24.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	8.88523045837577	8.9905617342427	8.84373775626501	8.6734956639454	9.15919286643642	8.61493975828319	-0.084457133046429	0.723466623365476	0.929080239793919
Merged-chr7-107595743-2	chr7	107595243	107596243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	692.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	6.66090423757075	6.73295233882921	6.89982869631226	6.6615986566766	7.08001338328092	7.25216044953536	0.392914936413411	0.162270688923155	0.535696071569842
Merged-chr16-90259183-4	chr16	90258680	90259680	+	921.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	25306.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.61350285214368	5.44088390762198	4.93027639218938	5.51423721275834	5.15543398733733	5.11496011780878	-0.188001155025828	0.639320036703315	0.898021510164209
Merged-chr4-125102923-4	chr4	125102437	125103437	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290701, exon 5 of 7)	exon (NM_001290701, exon 5 of 7)	17803.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	4.50369498365981	4.59045004160586	4.56606264665452	4.30640044431714	4.60380285000397	4.74732834419447	0.0187483578748033	0.965577542012784	0.991995030766812
Merged-chr11-71849613-4	chr11	71849073	71850073	+	965.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	90549.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	6.28261305057032	6.57497052045357	5.75933534995137	6.20361711329933	6.48337271966782	5.73452957608554	-0.117367020682959	0.75556861471243	0.93934398083031
Merged-chr10-61336868-2	chr10	61336368	61337368	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 18 of 19)	intron (NM_013753, intron 18 of 19)	39032.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	2.58728313239548	2.55140030331728	2.84336944703304	2.65399930559432	2.65247115869453	2.85746254739685	0.322664720756246	0.670651804074036	0.910053903576255
Merged-chr3-87361342-4	chr3	87360821	87361821	+	805.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	3440.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.30054927097478	6.17865887593636	6.46658681832989	7.1829072999759	7.26174861804928	6.43003819019669	1.10992894999697	0.00050845416844023	0.0106220071422482
Merged-chr2-170133520-4	chr2	170132968	170133968	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	CpG	-2248.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.46815380781138	7.49883978122838	7.5270911858448	7.66700189741164	8.06751978992853	7.57404894265837	0.435251308414998	0.0788365714386172	0.370905430072626
Merged-chr11-107511039-4	chr11	107510547	107511547	+	792.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31519.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	4.17940264132451	4.17464225518334	4.1439387361418	3.99584355722149	4.07238233736484	4.11863737764674	-0.302236370087039	0.522647189138597	0.847682942091387
Merged-chr8-69900925-2	chr8	69900297	69901297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023312, intron 2 of 4)	intron (NM_023312, intron 2 of 4)	-1387.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	3.89644105717052	3.60204975518323	3.75496061821733	4.01239059543382	3.93856812053403	3.87773489735483	0.594670961273979	0.25846730013062	0.65604743790094
Merged-chr7-123396988-2	chr7	123396488	123397488	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10829.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	6.20926384722689	6.46582193090745	6.60609426861719	6.60797899595151	6.46039367685225	6.24018760349864	0.0335084412084913	0.908076814573526	0.979108668058273
Merged-chr13-92861627-3	chr13	92861111	92862111	+	975.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16824.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	2.17638425246628	2.15158149800228	2.28308869827543	2.40555087154976	2.31237730492839	2.67093552667463	1.80497687640686	0.0421170136827033	1
Merged-chr17-29034391-2	chr17	29033891	29034891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	ID4|SINE|ID	1731.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	5.06162059191198	5.05165718663494	5.01349410392236	5.16807541481619	4.77305863217005	4.8157419813064	-0.242609583595152	0.532132085382994	0.851971173271146
Merged-chr5-43182155-2	chr5	43181655	43182655	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51308.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.40800444282144	4.12636723456897	4.42031545121723	4.49475338492898	4.72548038602037	4.57125957317211	0.72262642136219	0.103952418235323	0.429882849586243
Merged-chr11-85235562-2	chr11	85235062	85236062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	396.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	6.99221571271233	7.2547181417767	7.09285823559041	6.8566348263473	6.81434670546383	6.87998415542815	-0.415200864397085	0.0918919048736162	0.403767313762679
Merged-chr11-16629842-4	chr11	16629317	16630317	+	895.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-121333.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	2.67522978421871	2.43536086044729	2.62991354444882	2.34372303295655	2.18554004830268	2.76318444555746	-0.752598277894505	0.41036526371202	1
Merged-chr7-43919995-4	chr7	43919514	43920514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13757.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	6.73154448436845	6.91057265345104	6.85162981338195	6.68482155098305	6.88162351974883	6.90989453471736	-0.00719350437422249	0.977362331736475	0.994771164142869
Merged-chr13-118420611-2	chr13	118420113	118421113	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-33361.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	3.41985490793758	3.47185591498104	3.57751760842419	4.16892378485127	4.22190866292101	4.24775442605556	2.42742091524898	1.08711541136127e-05	0.000430541166818411
Merged-chr11-8589225-2	chr11	8588725	8589725	+	945.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	75310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.93758146293053	6.95828288947508	7.00742569227384	6.71534651594928	6.73012400736558	6.95925984877491	-0.258700757732608	0.298704068413135	0.695427199902635
Merged-chr7-27933679-4	chr7	27933198	27934198	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4268.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	3.39748092406881	3.35946755587465	3.80641636501147	3.2063634262938	2.94750001967555	3.32816848699674	-1.48509892951168	0.0276788595788883	0.198544916525213
Merged-chr13-56351881-2	chr13	56351381	56352381	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11019.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	4.25814422741701	4.25455221459014	4.38726925112167	3.90094863335119	4.11145242844418	4.74839232457789	-0.00480770510745155	0.992772108871063	0.998580600973641
Merged-chr5-139378053-4	chr5	139377563	139378563	+	967.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	366.0	NR_033147	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	6.73805165864028	6.64004067081219	6.64696775576132	6.56299524451678	6.7029153241298	6.38091403004372	-0.174854488495473	0.51066960713922	0.841022022619749
Merged-chr1-128705353-4	chr1	128704860	128705860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113061.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.7884199010162	5.5168386929429	5.42488220002391	5.4401152775883	5.25432844524528	5.19327014126846	-0.560951164092967	0.107315688103548	0.43731445103678
Merged-chr4-16161585-2	chr4	16161085	16162085	+	928.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	2058.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	4.299248520389	4.49691463816309	4.15748843295051	4.49767576968388	4.55403846648977	4.50395089627803	0.469565793405626	0.29409821551452	0.690744745095144
Merged-chr1-57850042-3	chr1	57849538	57850538	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	4467.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	5.00770158988127	5.02037905301049	4.62027166400169	4.73418115292238	4.29625056564868	4.15340307676229	-1.13334815888748	0.0164618741244133	0.141811742638387
Merged-chr7-5102221-1	chr7	5101721	5102721	+	608.0	f1_c57bl6.idr	Intergenic	Intergenic	14690.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	5.1489615511964	5.70741245389924	5.66980294153644	5.16289758192837	5.59791410944107	5.65483128910641	-0.0788999073863627	0.83719574405107	0.962097379139264
Merged-chr5-140648057-5	chr5	140647516	140648516	+	877.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	1015.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	5.74328918132822	5.85474465866491	5.57825195184919	6.12015056581388	6.07704817484931	5.75617661186867	0.467552507345113	0.140198664129509	0.500478375086369
Merged-chr16-5014729-2	chr16	5014229	5015229	+	678.583374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001079814, exon 16 of 16)	3' UTR (NM_001079814, exon 16 of 16)	-1176.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	4.14901698795213	3.85685489449248	4.06474525109678	3.8014585757373	3.70297806849222	4.04061794610256	-0.558884084745537	0.286108986210273	0.683448354278541
Merged-chr10-58406072-4	chr10	58405567	58406567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	11694.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.71615837280352	5.29055162442301	5.59075661783462	5.39013148055372	5.46602439066794	5.77964837203708	0.00809203246251963	0.981746484470041	0.99582830941535
Merged-chr11-3183374-2	chr11	3182858	3183858	+	994.833374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	B3|SINE|B2	10105.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.79905421875408	6.22422639772888	6.08403423931789	4.32085380168793	4.27187400075078	6.78749797929988	-0.422763485399732	1	1
Merged-chr7-109083324-3	chr7	109082825	109083825	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038624)	promoter-TSS (NM_001038624)	-1.0	NM_178780	320360.0	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	3.32033684925921	3.2822142607584	3.4180214642557	3.10413240986076	2.92392378146989	3.15629039328579	-1.22666359418776	0.0608748296367983	0.319729072912919
Merged-chr6-129180530-4	chr6	129180027	129181027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-88.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	7.01491275192277	7.15184066328352	7.23759158277544	7.40153423670137	7.65345634004886	7.06780038541492	0.406542945778979	0.12739207906497	0.47713250153821
Merged-chr11-80143298-2	chr11	80142798	80143798	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1145.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	5.30426732878058	5.05917435887943	5.03724242717338	5.91222102301484	5.63194599342204	5.5643535366648	1.09772384073471	0.00186737415503855	0.0292949601607179
Merged-chr15-73745169-2	chr15	73744669	73745669	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-2857.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	2.6338199342645	2.66948707923455	2.82079419608903	2.92842632385948	2.55642738057433	3.23029274195782	1.09559856772472	0.166022454645133	0.541109862183596
Merged-chr10-80822201-3	chr10	80821709	80822709	+	887.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4447.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	4.66455137533283	4.51748818940909	4.71261188424873	4.26478006503649	4.46803143118905	4.62569207006974	-0.429229304942818	0.322500843742868	0.71597252417707
Merged-chr4-124693614-4	chr4	124693088	124694088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026031)	promoter-TSS (NM_026031)	-34.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	6.68561856155122	6.87002740794444	6.88686665802628	6.95230912034458	6.70049957208341	6.76792026911265	-0.0069721204222318	0.978392513929828	0.995146803081243
Merged-chr2-98662333-4	chr2	98661833	98662833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1194676.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	11.251376962478	12.7137348079763	11.0431785290864	11.9048460655959	12.0334678316831	11.6416658382972	-0.067465609744685	0.921988932238057	0.982542868764899
Merged-chr11-62457398-4	chr11	62456914	62457914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-82.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	8.52278345006263	8.61601166625824	8.33061271744996	8.46316790783381	8.37874917989218	8.13602257122285	-0.224869205423168	0.311065663329257	0.706321509463797
Merged-chr3-55442262-3	chr3	55441746	55442746	+	698.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 4 of 16)	intron (NM_001357475, intron 4 of 16)	-19482.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	3.03618443522368	3.28569390697933	3.08205642663629	2.73909236595451	2.95286191335327	3.21052914966671	-0.736137432440622	0.309429710674315	0.705003874352637
Merged-chr16-12473740-4	chr16	12473247	12474247	+	888.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-337643.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	4.57225571621835	4.42598797670503	4.51523620144215	4.45719044587541	4.59519800678873	4.66167790347213	0.165324495008383	0.695355011877354	0.919288514725224
Merged-chr5-137784662-2	chr5	137784162	137785162	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	2039.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	3.62510661342816	3.39512264482029	3.84326649162453	3.7338943402695	3.40699499222067	3.76801728906607	0.0463106093284618	0.937789085061257	0.986155853119379
Merged-chr12-8864665-4	chr12	8864166	8865166	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56641.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.61542172747826	3.61619567642023	3.77436624443806	3.48484401018765	3.32651201164961	3.42476542095542	-0.940103084205585	0.10322847651192	0.428315302363809
Merged-chr10-67536837-4	chr10	67536315	67537315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1054.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	7.45004906001286	7.27034704542856	7.17039167706178	7.58984892846506	7.50730257480873	7.02611941227033	0.148717524739848	0.578045724802231	0.872303979801236
Merged-chr11-93962703-1	chr11	93962203	93963203	+	578.0	f1_balb.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5818.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	3.30417648340705	3.07935484554892	3.30152199861149	3.31116113163961	3.32900447919559	3.19993667212201	0.224795793315801	0.720422699915703	0.928155640080294
Merged-chr4-151841081-2	chr4	151840581	151841581	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	Tigger15a|DNA|TcMar-Tigger	20687.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.30181363134768	4.30721696596744	4.83595993555304	4.46945013837934	4.22289512370423	4.93185192619473	0.167402498615671	0.739609094170758	0.934245371298156
Merged-chr8-57541614-4	chr8	57541099	57542099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29756.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	6.82400356297819	6.71687743807065	6.67003693150467	6.71657425152436	6.70928703301376	6.38426518743589	-0.186985448260264	0.483477452193705	0.826231091438361
Merged-chr11-29654015-4	chr11	29653507	29654507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-38891.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	5.35012269187985	5.60976442273286	5.73850279721354	5.27826305501143	5.50766099966456	5.42250985401142	-0.30344664833731	0.379225917399104	0.761692242666705
Merged-chr1-95668542-4	chr1	95668013	95669013	+	885.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-919.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.06099408881787	6.20167199629405	6.38027157845424	5.96017171657442	6.26134708712979	6.14683229716146	-0.134809441959469	0.64940325195384	0.902160587683553
Merged-chr4-145037167-4	chr4	145036670	145037670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144033.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.03516514001014	6.03207459936371	6.14898185553802	5.55530785831227	5.88053187159446	5.71995526549293	-0.592858992901519	0.0552624575140061	0.302176069159414
Merged-chr15-59760309-4	chr15	59759808	59760808	+	872.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34651.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.34262852730841	4.28860877643935	4.55105713511172	4.29344245599034	3.69794517874434	3.89419135091961	-1.14343139079259	0.0310210562377193	0.213194074973539
Merged-chr2-39224730-2	chr2	39224230	39225230	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024209, intron 1 of 6)	B3|SINE|B2	1619.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	2.77052917665944	2.77847020840625	2.79808859956349	2.67215199536271	2.76633863134478	2.48055182391472	-0.700849019819454	0.37236969417208	1
Merged-chr12-33311883-1	chr12	33311383	33312383	+	634.0	f0_balb.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	9368.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.90389310013793	5.62306257464067	5.89594125999484	6.01614305120426	5.95811299815848	5.72834474165911	0.185928523805073	0.554266574462957	0.862722382579104
Merged-chr5-125311232-1	chr5	125310732	125311732	+	829.0	f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	29862.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.25026700607121	3.07213721669976	3.44782975333641	3.38664301129893	3.07451550108962	3.56850718024724	0.364518117364783	0.581449603776925	0.873298754324848
Merged-chr14-47513844-4	chr14	47513288	47514288	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	41227.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	4.59423087825102	4.48418876743502	4.58517093970561	4.87340124591605	4.7710772281528	4.98779063868322	0.747564011990365	0.0636705347166139	0.328816897511172
Merged-chr4-53122043-4	chr4	53121566	53122566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37829.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.61247991567325	7.24345936058372	7.28889925848795	7.55454975412076	7.55101609299702	7.35768575065082	0.144880875551499	0.556679441077049	0.863715208807531
Merged-chr8-108766228-2	chr8	108765756	108766756	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	51612.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.14239763058182	3.06066592189806	3.18823993439717	3.16344704917227	2.97353185775879	3.14532400801816	-0.161290106527264	0.804151737804818	0.953581464738891
Merged-chr7-64357662-4	chr7	64357160	64358160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	MLTR14|LTR|ERV1	16435.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	7.53283281775211	7.68968424257172	7.73916152683733	7.79128651977627	8.12395904711129	7.62235888193334	0.313179727917792	0.205081317873034	0.595694220420628
Merged-chr2-102968500-4	chr2	102968002	102969002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66837.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.82498533062833	7.70841384862943	7.3627814834903	7.47157070457241	7.63363473974092	7.30338656892357	-0.248577417586014	0.327166277085156	0.719396012109034
Merged-chr1-152914952-2	chr1	152914452	152915452	+	842.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12306.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.91095321367548	6.34530993239742	5.90183073543409	6.44458515237385	6.59772097329075	6.61241218838973	0.776924183069461	0.0102157230973762	0.10192204885929
Merged-chr1-66816558-1	chr1	66816058	66817058	+	1000.0	f0_c57.idr	intron (NM_001357156, intron 1 of 14)	CpG	1037.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	8.71240782400864	8.90407879613637	8.59397282205997	8.65695081036185	8.96830008486505	8.84647710392871	0.117223163154717	0.590747759172326	0.877301111216348
Merged-chr6-31465192-2	chr6	31464692	31465692	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 9 of 17)	intron (NM_013791, intron 9 of 17)	66364.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	2.93442866463233	3.02460844039177	3.11698447735332	2.77472841026056	3.003815454089	2.89525345940894	-0.593913743836917	0.396845140765346	0.77378943789668
Merged-chr2-68879287-4	chr2	68878771	68879771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	17830.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.31616210818901	4.50543651377571	4.79683001295769	4.8179625521239	4.44448066867702	4.82596564049909	0.373882502004509	0.405958597793583	0.780439975167702
Merged-chr14-14013065-4	chr14	14012597	14013597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139227, exon 2 of 12)	exon (NM_139227, exon 2 of 12)	606.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	7.91891826101411	7.37632101254053	7.46392883670817	7.67635108432372	6.88212276002762	7.53105122980504	-0.30207853175551	0.335218026870458	0.725385451575238
Merged-chr7-59229195-4	chr7	59228744	59229744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173010, exon 1 of 9)	5' UTR (NM_173010, exon 1 of 9)	494.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	8.53989116943576	8.9496656994724	8.55387877896225	8.43743353277732	8.42853614433922	8.62448195356465	-0.279764350361626	0.221856127495806	0.61671749095216
Merged-chr11-115158162-3	chr11	115157640	115158640	+	736.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 3 of 8)	intron (NM_021411, intron 3 of 8)	3962.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	3.53596510449145	3.82086683436564	3.68133701443683	3.91288970993631	3.72942411574529	3.80430625927199	0.423332937314984	0.436129426708478	0.799461119181469
Merged-chr11-98360230-2	chr11	98359730	98360730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	B1_Mus1|SINE|Alu	1862.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	6.1901656636086	6.49108820642819	6.50413851169387	6.38465424476993	6.58823532766665	6.12655285428136	-0.010742569550915	0.971271078918393	0.993727127580947
Merged-chr19-23143673-2	chr19	23143173	23144173	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	2447.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.44486350184762	3.22394335468586	3.19022810700864	3.61721906337684	3.16005120860725	3.38262048057474	0.402934050492063	0.532440996939545	0.851971173271146
Merged-chr16-20694675-4	chr16	20694180	20695180	+	926.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133778)	promoter-TSS (NM_133778)	-377.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	3.38462380783076	3.39945237691378	3.15067519465878	3.27366046035052	3.46664080013318	3.51123322076979	0.375807876819488	0.544644914087412	0.857872186786783
Merged-chr8-117480695-4	chr8	117480158	117481158	+	941.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17617.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.45064263482797	3.48332581845765	3.67820364904515	3.61833777034788	3.90690097614826	3.89556338815675	0.956940900497905	0.0870046809113068	0.390943162829032
Merged-chr9-21238869-4	chr9	21238480	21239480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016679, exon 1 of 5)	5' UTR (NM_016679, exon 1 of 5)	352.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	8.28580573178105	8.25538943993158	8.01259750442185	8.14873310979222	7.90987720057348	7.8111696209864	-0.321640559458189	0.16088946771841	0.533613314330098
Merged-chr11-83225628-2	chr11	83225128	83226128	+	651.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015519, exon 4 of 4)	non-coding (NR_015519, exon 4 of 4)	2052.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	5.12068155060176	5.2223328702968	5.21027543945201	4.93741685619625	4.78449666562458	5.30372512101188	-0.364747572926853	0.344719439229872	0.733279141917758
Merged-chr7-25756252-4	chr7	25755749	25756749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190974)	TTS (NM_001190974)	-1490.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	5.93187186393929	6.05741363054358	6.34402537774347	6.2803024211074	6.47133025004068	6.16447529902658	0.350355028837131	0.24254902265626	0.639697588980254
Merged-chr12-3698205-4	chr12	3697710	3698710	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	B4|SINE|B4	-108770.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.84225345167475	5.58234896460402	5.83505597199007	6.11306223771151	6.33037279268857	6.21119618724008	0.819186786574283	0.00648328605957704	0.0739147384710343
Merged-chr14-77897370-3	chr14	77896868	77897868	+	997.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-6871.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	2.11643271002532	2.20758406426272	2.26054856739083	2.38113836278684	2.34553176398675	2.52762100168956	1.54650713675661	0.0764960923234466	1
Merged-chr12-106016473-4	chr12	106015966	106016966	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	L1MD|LINE|L1	6203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.04022907035126	4.89101475964224	4.80462495914558	5.25946877698362	4.80796505454868	4.83165039000085	0.13948888424618	0.729970582777831	0.930720808358785
Merged-chr19-4304906-1	chr19	4304406	4305406	+	947.0	f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1316.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.70151777234058	5.99570000995914	6.28300230139946	5.97451372917512	6.11745942289728	5.84593748976273	-0.0224404816988951	0.945202236428749	0.987875414328125
Merged-chr7-127244484-4	chr7	127243986	127244986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177362)	promoter-TSS (NM_177362)	-40.0	NM_177362	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	6.49732270338309	6.63143435761196	6.5030794981295	6.61897238520014	6.23827928220588	6.27449036129659	-0.256226722859578	0.363419845975928	0.749020076884104
Merged-chr5-34538825-2	chr5	34538325	34539325	+	801.174988	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-4540.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.38956662390748	5.27671978390939	5.61829288076015	5.39904055088877	5.39078690753505	5.27504340345863	-0.126579361544003	0.713472715648849	0.92557476402444
Merged-chr13-110597673-3	chr13	110597186	110598186	+	964.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202642.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.15113173831412	4.90943189567688	4.9283006779504	4.63069008278663	4.75530901812331	4.64150307277412	-0.724902361574137	0.0675801345012307	0.340058528760184
Merged-chr6-5324856-2	chr6	5324345	5325345	+	622.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-26472.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.55610021286358	3.29312568862251	3.6337788539401	4.19246079844136	4.14854066894421	4.24373110160218	2.33615431683599	3.8062647630067e-05	0.00125829033929385
Merged-chr5-136246596-4	chr5	136246081	136247081	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1641.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	6.01284687348388	5.61996717605	5.88946879827947	6.27443747667245	6.31170018256243	6.17823569065389	0.705459851029945	0.019753401722416	0.160152104698313
Merged-chr5-76951630-4	chr5	76951136	76952136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172146)	promoter-TSS (NM_172146)	-58.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	6.420957650387	6.61513299957209	6.77850145500345	6.82835325813862	6.71114462148992	6.69889089024672	0.225415038348508	0.395058988157688	0.772579826044138
Merged-chr8-81399336-1	chr8	81398836	81399836	+	888.0	f0_balb.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	56774.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	3.26277182304877	3.20297284014565	3.05092320058424	3.11888243724954	3.03599566923389	3.29807981121008	-0.130570521679723	0.841331896671932	0.962909549034125
Merged-chr4-88390696-6	chr4	88390195	88391195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48231.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.85442251696391	6.44236774103094	6.28291717756005	6.63413127077206	6.37436379827701	6.25846704480993	-0.198986463132369	0.517747630433296	0.844729967743376
Merged-chr16-11322917-4	chr16	11322431	11323431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	27.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.99922336242038	7.08815118873954	7.21619721220253	7.10564374557957	6.79797841233039	6.80977808206705	-0.284543915397864	0.264982249961875	0.662790696671811
Merged-chr4-46557191-3	chr4	46556762	46557762	+	904.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	PB1D7|SINE|Alu	9178.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	6.09168854297807	6.30287635037211	5.90996796524543	5.56059564811039	5.16752149802565	5.38497412282538	-1.36011371398869	4.98608612350146e-05	0.00157749906526353
Merged-chr13-9149630-4	chr13	9149146	9150146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 8 of 17)	intron (NM_172585, intron 8 of 17)	55765.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	7.07179412927721	7.04569390661689	6.68628811208213	6.82324088261281	6.89230652582367	6.49272952585835	-0.304006505189375	0.274263840414567	0.671699134465491
Merged-chr10-41523415-4	chr10	41522898	41523898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	3898.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	5.94473221631454	5.9316084999243	5.88178789530329	5.86294387922887	6.07497148480217	6.16631695808491	0.201897612508964	0.497022332001731	0.833442633454308
Merged-chr5-136136869-2	chr5	136136369	136137369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027891)	promoter-TSS (NM_027891)	534.0	NM_001359416	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	4.27517187997903	4.23006181818292	4.27177579822367	4.14346015293741	4.33557045485998	4.15433697168409	-0.0997264675148765	0.828884878049064	0.959925957873127
Merged-chr2-130563739-4	chr2	130563255	130564255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	-2.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	6.57629045901111	6.92106131231109	6.76433177315717	6.62567272442327	6.55526576608929	6.39193525723244	-0.36375426954502	0.180222106913922	0.561900868076458
Merged-chr17-33799458-4	chr17	33798968	33799968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-11055.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	5.09794110583236	4.88177478537444	4.84167397747779	4.72899975911635	4.6864301153546	4.62586302196356	-0.605497013973279	0.12669842298292	0.475633616355245
Merged-chr7-80861615-2	chr7	80861115	80862115	+	807.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009553)	promoter-TSS (NM_009553)	-493.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	4.47360318639029	4.54064145786197	4.42613146328917	4.52680590492623	4.37944404247723	4.45003305321178	-0.084888801772214	0.842965791709073	0.963230717210186
Merged-chr13-58453799-3	chr13	58453316	58454316	+	743.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50473.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.19461797641557	5.98745920637752	6.16812979280803	6.37549875077139	6.23432694820121	6.00438823001693	0.176241253280477	0.549491598671221	0.860332521265425
Merged-chr11-117826958-3	chr11	117826436	117827436	+	848.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	-922.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	6.47082325190977	6.51714419174915	6.26374180169248	7.3563986424242	7.76029593142618	7.4899041495266	1.70641425408129	1.49991798050069e-10	1.93796856089289e-08
Merged-chr17-70998292-2	chr17	70997792	70998792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357820)	promoter-TSS (NM_001357820)	-280.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	3.87991214260592	3.78560474214352	3.92013381936309	3.97616447708974	4.04240146331891	3.98925502557485	0.445563599934583	0.37173082694952	0.755815136565724
Merged-chr2-122377984-4	chr2	122377466	122378466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9048.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	7.48703094450089	7.89184336589349	7.32967740960915	7.3902513191282	7.71665986203453	7.30481713095586	-0.158815283141007	0.563225261254004	0.865895230094843
Merged-chr6-113308501-4	chr6	113308002	113309002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	1365.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	6.93964278719995	7.11987987921378	7.07184931540317	6.80776625545398	7.21988504918011	7.20284787151867	0.0700703478685949	0.787979169597476	0.948776817409006
Merged-chr11-115660565-2	chr11	115660065	115661065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-32270.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.84544558550243	4.92942598805051	5.18098890458362	4.93558662010448	5.19730448255711	5.18128464108426	0.273629407117437	0.472267621483775	0.820550293768681
Merged-chr4-130915574-4	chr4	130915081	130916081	+	740.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2247.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	7.19981935331429	7.23779138545212	7.30942154057065	7.3053717287464	7.64282246627479	7.48321616777078	0.357106431144408	0.133897018673647	0.489254484884807
Merged-chr1-74239619-5	chr1	74239220	74240220	+	914.7200320000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	MER3|DNA|hAT-Charlie	3203.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	6.05536841960898	6.1321046468139	6.27794579459013	6.26408706439376	6.40713559067316	6.23782844862784	0.267372863517287	0.341224373228149	0.730694537601149
Merged-chr19-47441732-4	chr19	47441223	47442223	+	885.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	22688.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.45123464780669	5.28282082444545	5.08918020059683	6.06500092643042	5.98625006106502	5.65113880362503	1.16373726156035	0.000779830567933318	0.0148962676530293
Merged-chr8-79384814-3	chr8	79384326	79385326	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	14642.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.49210962913738	3.22709929224816	3.03274534097601	3.49126638685063	3.21022847237936	3.3544794133176	0.334017859449913	0.615610498742894	0.888073730124794
Merged-chr10-81233111-4	chr10	81232579	81233579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034895)	promoter-TSS (NM_001034895)	-84.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	7.00423438819217	6.62000432262667	6.12088209945792	6.67637784535047	6.16763486616147	6.15916377681299	-0.450575092164314	0.201837549707137	0.59145972305094
Merged-chr4-141445513-4	chr4	141445012	141446012	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009541, intron 1 of 15)	intron (NM_009541, intron 1 of 15)	839.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	4.68359152273419	4.16388717478275	4.27096656796239	4.95874272500873	4.23862441427984	3.9067600306474	0.124273688390293	0.89438042009811	0.97547960383733
Merged-chr9-53692136-4	chr9	53691646	53692646	+	756.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	B2_Mm1a|SINE|B2	14086.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	3.33689562422737	3.52037078953397	3.45103145070205	3.19466729060903	3.45558853683279	3.29718740766841	-0.432107815540756	0.482049725663306	0.825301280474409
Merged-chr7-132776629-1	chr7	132776129	132777129	+	710.799988	f0_balb.idr	intron (NM_212473, intron 2 of 4)	intron (NM_212473, intron 2 of 4)	287.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.72796130778224	2.90698041109725	2.77888708541498	2.49136971726808	2.2449645122292	2.53564221979658	-2.5649352647628	0.00593794082890445	1
Merged-chr4-133545488-1	chr4	133544988	133545988	+	862.0	f0_balb.idr	intron (NM_010948, intron 1 of 7)	intron (NM_010948, intron 1 of 7)	539.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	7.03200116348286	7.01785297387827	6.96518120910047	6.93807782000116	7.00858951494907	6.50320534238792	-0.241759483313373	0.369639001601422	0.754252833519326
Merged-chr18-66471341-8	chr18	66470809	66471809	+	938.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	12705.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.69531424951928	6.64295201387738	6.59906857934729	6.48490199687976	6.38088530169956	6.15149141169454	-0.473015358990388	0.0813707343876575	0.377351996421519
Merged-chr12-84034259-4	chr12	84033752	84034752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-4127.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	4.45885924856412	4.4675794523796	3.79612959418229	4.5850398656057	4.51924201071078	4.05018790615066	0.32613567955648	0.566449146135965	0.867389339126889
Merged-chr4-109136981-3	chr4	109136482	109137482	+	854.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355191, exon 1 of 21)	5' UTR (NM_001355191, exon 1 of 21)	931.0	NM_001355191	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.10144997193263	4.22520660488577	4.08100045114702	3.89904490119414	3.78171438500505	4.05503011790846	-0.697566540335994	0.16117768344448	0.533909498150735
Merged-chr5-113632557-2	chr5	113632057	113633057	+	666.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	MLTR18D_MM|LTR|ERVK	11046.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.3137112186395	4.84038242509788	5.06191936468884	5.52663488559794	5.10954764640693	4.90051700473033	0.25136307856709	0.543033335673826	0.857468369859798
Merged-chr1-171849678-4	chr1	171849167	171850167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	9970.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.4787830700057	7.42593895868982	7.39692754708296	7.72106760110683	8.0430963482356	7.454080821199	0.489918548728341	0.054309387955517	0.299319655462311
Merged-chr9-21924719-2	chr9	21924219	21925219	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	B1_Mus1|SINE|Alu	2569.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	4.93586308312675	5.12734057262782	4.69059175477178	4.56666466211176	4.90933468889324	5.08927388467975	-0.155977829621377	0.712224426321097	0.924990607920001
Merged-chr17-35429721-2	chr17	35429246	35430246	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	4869.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	1.70761863369405	1.69043948055588	1.68380724222975	1.91684004824548	1.91452284168697	2.03916572304136	2.60171193303066	0.0202511916956497	1
Merged-chr14-65358472-4	chr14	65357967	65358967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199029)	promoter-TSS (NM_199029)	-209.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.74740883704652	5.6044769065857	5.68757996454141	6.05427795492755	5.49961302797432	5.80152053989141	0.217106500158118	0.52094248332805	0.846846888510977
Merged-chr16-30870198-4	chr16	30869701	30870701	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	211231.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.25441794909427	3.7977460448366	3.93547563746674	3.81377235316919	3.82165398044	4.09962569791549	-0.30904692769509	0.562537657264748	0.865745518569294
Merged-chr11-75619884-2	chr11	75619384	75620384	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 9 of 11)	intron (NM_008850, intron 9 of 11)	-11136.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	2.5331627815211	2.52138528616087	2.83119450500691	2.34052843202674	2.29603318029653	2.43157734813185	-1.8584930810281	0.0314169702252185	1
Merged-chr15-66559869-2	chr15	66559409	66560409	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 1 of 9)	intron (NM_172514, intron 1 of 9)	1137.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	5.92679847500188	6.26740296575664	6.15449383860755	6.10302860831799	6.79726354918466	6.10422280776157	0.448204072384528	0.191759669155922	0.578581026812988
Merged-chr13-47287883-1	chr13	47287383	47288383	+	683.0	f0_balb.idr	Intergenic	Intergenic	93880.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.09518530557933	2.23897520817185	2.22745284701828	1.90508380950426	1.86324793763323	1.96797386889335	-2.55841109705355	0.016091777898181	1
Merged-chr2-167963282-2	chr2	167962782	167963782	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30955.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	2.88158220548681	2.96267815292032	3.16679428170783	3.12974122903852	3.09350870804387	2.8793062152548	0.178666732735082	0.795832647705106	0.951363306518877
Merged-chr8-115678374-4	chr8	115677877	115678877	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	28517.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.48822641940855	4.53056179628838	4.33396340558789	4.61043845830426	4.23755670882501	4.16011857983457	-0.266554945156347	0.566681555672292	0.867570172665686
Merged-chr7-27979313-4	chr7	27978725	27979725	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081021)	promoter-TSS (NM_001081021)	-68.0	NM_001081021	338354.0	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	6.44853789578837	7.05080721131686	6.91148146397151	6.65485838635792	6.4698497208336	6.44197985807055	-0.476544255216624	0.107255740658693	0.437112977848289
Merged-chr11-76407280-2	chr11	76406780	76407780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023355, exon 1 of 3)	exon (NM_023355, exon 1 of 3)	137.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	6.41153948915506	7.06916286141783	6.06124107301667	6.49448832278671	6.31002963156315	6.23918348231955	-0.392739691465287	0.269165710086875	0.66629407200667
Merged-chr1-85735918-4	chr1	85735410	85736410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	intron (NM_177055, intron 1 of 5)	696.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	7.61203868957953	8.03873952481869	7.97255996903913	7.94689532626679	8.17494178855366	7.76198755937257	0.130774592716386	0.602389236315831	0.882333537096319
Merged-chr16-43381990-2	chr16	43381490	43382490	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	38206.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	4.88665722842048	4.90951203740092	5.10798821528951	4.89154086458766	4.74124912187899	4.97130310686699	-0.223429757671635	0.562457151979904	0.865745518569294
Merged-chr17-33954468-1	chr17	33953968	33954968	+	1000.0	f1_balb.idr	intron (NM_011296, intron 2 of 4)	intron (NM_011296, intron 2 of 4)	1173.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	5.41213470674309	5.09404095163636	5.50283101457326	5.61192879338923	5.56395431313147	5.99779404081723	0.736510558053227	0.039669725457695	0.247606219779753
Merged-chr2-167293509-4	chr2	167293030	167294030	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52993.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.84458550315384	4.56218286529794	3.99092976167952	4.12215084557162	3.82207086687499	4.21913767912107	-1.23253549455432	0.0227947933265117	0.176159483896386
Merged-chr2-34774245-15	chr2	34773606	34774606	+	943.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022310, exon 5 of 8)	exon (NM_022310, exon 5 of 8)	2016.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	5.89138984196629	5.52957353529735	5.33290108263016	5.24564365519098	5.59411382880942	5.76592876954017	-0.12345557202601	0.739591657023226	0.934245371298156
Merged-chr17-32280709-4	chr17	32280202	32281202	+	868.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	3421.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	4.72470003638023	5.06380042012553	5.40437751116872	4.9809242882814	5.06701746673808	5.26739188134982	0.0479591288918604	0.906576197752057	0.97878370342479
Merged-chr16-58510707-2	chr16	58510207	58511207	+	748.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	RLTR20A4|LTR|ERVK	12719.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.00995491740475	6.90744145588142	6.75092026398093	6.72327823032044	7.03076371923541	6.84026422966797	-0.0347354071363831	0.893677943093006	0.975265071347118
Merged-chr9-50556407-2	chr9	50555907	50556907	+	744.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025687)	TTS (NM_025687)	-1269.0	NM_133217	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	4.93481439477661	5.14133104974319	5.37886111707472	5.21647136492517	5.04537359143555	5.41293420617912	0.14162163348978	0.709259983614415	0.923935571500538
Merged-chr17-48285807-1	chr17	48285307	48286307	+	758.333313	f0_c57.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-14231.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	2.72914035966717	2.70282110200801	2.90472133868068	3.7518965189795	3.62462629136453	3.88249012268236	7.16076342112857	2.23896044025287e-08	1.87612709277504e-06
Merged-chr17-17389306-1	chr17	17388806	17389806	+	819.0	f1_c57bl6.idr	intron (NM_025934, intron 8 of 9)	RSINE1|SINE|B4	-13380.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	2.64166823354748	2.66693502037016	2.8039782829732	2.89033537136865	2.46343012897479	2.81693403809044	0.16156185532188	0.836292939938357	0.961960888484752
Merged-chr3-119814941-4	chr3	119814445	119815445	+	823.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31557.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.51392790276899	4.50606119028134	4.25113313499751	4.49041541367279	4.36175056319147	4.32004084215754	-0.11282415377046	0.800031596903573	0.952408432552781
Merged-chr1-92971236-2	chr1	92970736	92971736	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.48400167186177	4.15627365006526	4.29824151615299	4.15959746142512	4.07606555143975	4.08577049844399	-0.590416249375151	0.212878065584306	0.605482203163822
Merged-chr10-98880909-4	chr10	98880415	98881415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-33727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	9.11168771626579	9.13441509088161	8.5816253004115	8.79142617204596	9.29852026140717	8.47807377606717	-0.0841640711832247	0.771779412283922	0.943614978016208
Merged-chr4-53151169-3	chr4	53150680	53151680	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	8715.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.255729092372	7.3442751385646	7.25704454596167	7.34235867062086	7.54515725179432	7.11547889097911	0.102817274874003	0.677010631852494	0.91266256545023
Merged-chr10-8873793-3	chr10	8873290	8874290	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	12280.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.63233550305967	7.60567992992316	7.36966190743376	7.22802971078846	7.41182410628112	7.21786370832176	-0.373276394441139	0.115883000615679	0.454508259025661
Merged-chr19-12014432-2	chr19	12013932	12014932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	22308.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.57913055753755	5.61809630850189	5.69435287878454	5.55590954135202	5.45040647517599	5.94464310191267	0.0467511449771767	0.889996243425853	0.974360328989611
Merged-chr16-22123766-3	chr16	22123220	22124220	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	39579.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	3.98209272395732	3.73808540694065	3.3621485448928	3.92313707983552	3.69188143979457	3.62189619865689	0.0896079861224068	0.883725568045363	0.973446302281334
Merged-chr11-20401017-4	chr11	20400501	20401501	+	777.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68288.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	2.80761027634894	2.83070084003272	2.8545948786185	3.05330532841292	2.99869910321565	2.98925858364492	0.897648487421218	0.190770467875247	0.577285852673513
Merged-chr19-43939405-2	chr19	43938905	43939905	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	793.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	4.62869897847583	4.64219090552665	4.39216128700185	4.36204102509404	4.40374573008662	4.46012994134162	-0.402667241468256	0.351409608844046	0.739299452698803
Merged-chr5-112255462-2	chr5	112254962	112255962	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023695)	promoter-TSS (NM_023695)	-358.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	4.22123707291073	4.07595625889266	4.19202035373984	4.2491408967367	4.50735384338008	4.26063524573743	0.515365713326666	0.267086229845051	0.664541693358289
Merged-chr13-10251957-4	chr13	10251464	10252464	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 1 of 4)	L1MC1|LINE|L1	108839.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.4314979233535	3.03738651043725	3.40907408362825	3.28998172955399	3.48807792968671	3.68441743797456	0.723736828681526	0.262896777863549	0.660891219379409
Merged-chr6-76268679-2	chr6	76268179	76269179	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-973798.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	6.3525341377861	6.34582296354786	6.23186035726725	5.85703293249646	5.93805293604126	5.75048595627598	-0.779917626974909	0.00704611153865056	0.0785494170562749
Merged-chr13-58401610-4	chr13	58401140	58402140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_031761)	promoter-TSS (NR_031761)	477.0	NM_001360494	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	8.71634871778068	8.83469688093736	8.71828295460893	8.70178446596709	8.82248021133412	8.85341071658165	0.0479499167311606	0.808203298796361	0.954644541568446
Merged-chr5-134452505-4	chr5	134451956	134452956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	3806.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	5.9341226539869	5.57788960891276	5.65525157408421	5.97102700878828	5.80880522938519	5.38082337917872	0.0344111565947499	0.921870679390432	0.982542868764899
Merged-chr15-96654931-4	chr15	96654418	96655418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12005.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.43875644030719	6.78937028424673	6.4669881350281	6.57143116392997	6.96070577746979	6.58096363238746	0.231217781563657	0.426397086256561	0.793775990271191
Merged-chr18-24020420-4	chr18	24019930	24020930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357447)	promoter-TSS (NM_001357447)	-60.0	NM_001357447	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	7.17956123747629	7.2069525395451	7.10702831909588	6.87684473850178	6.59765023584204	6.95550576635665	-0.548518165243998	0.0304528587419404	0.210931613268907
Merged-chr5-33336105-2	chr5	33335605	33336605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	CpG	533.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	6.99817487759276	7.03042010064564	6.92002568393058	7.08235837018517	6.96994683220866	6.61018008428591	-0.112518321076738	0.669096309930615	0.909505510225091
Merged-chr1-172343941-2	chr1	172343441	172344441	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	2731.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	4.27845979019575	4.48018134651917	4.54302325634159	4.02074162554347	3.82981937319234	4.49315663495221	-0.820349193330657	0.1105230167238	0.444247148071402
Merged-chr19-34198902-4	chr19	34198445	34199445	+	760.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6011.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	7.062375340813	6.97247961236742	7.00795449797254	7.49488404386511	7.54912179987129	7.18410500310824	0.616589764352146	0.0116908184078753	0.112212437199502
Merged-chr1-87035962-4	chr1	87035461	87036461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	53967.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	6.12134738584796	6.50398530552021	6.52054625881521	5.88069539198854	6.59204578098651	6.18278950869799	-0.210459915376116	0.532662543359096	0.851971173271146
Merged-chr2-69722237-2	chr2	69721737	69722737	+	926.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-851.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	6.31431912886991	6.46903765961772	6.55991006149319	6.52228660522759	6.89461930622277	6.09466402920156	0.182236181847903	0.571200731442526	0.869428183241799
Merged-chr6-67041063-2	chr6	67040563	67041563	+	636.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-3656.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	2.80993408159072	3.01376177283411	3.18865450119688	2.88329766232614	2.87046535811549	3.09447195561334	-0.277396734724748	0.693186151894725	0.91884092896984
Merged-chr2-165901673-2	chr2	165901173	165902173	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-16835.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.99247419600332	5.22385282431648	5.12778085418208	5.55368115067694	5.43623232771938	5.50459898746195	0.751339774243212	0.0301590114073563	0.209623867529773
Merged-chr4-99100918-4	chr4	99100400	99101400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	20015.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	3.35272145027446	3.16143810261862	3.02652572591003	3.23976112162213	3.09675322229901	3.39166165384796	0.208024411528652	0.751933365158048	0.938030338790992
Merged-chr5-97001835-3	chr5	97001295	97002295	+	661.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4106.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.90895459363983	4.59645185336339	4.60664743959776	4.86866263505928	4.68254245199241	4.83271447300569	0.171445692930642	0.676639866630962	0.912549881054299
Merged-chr6-113039801-1	chr6	113039301	113040301	+	782.0	f0_balb.idr	Intergenic	RLTR1B|LTR|ERV1	-6501.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	3.83889216301711	3.69039382001812	4.27540222929867	4.11366963996646	3.96165474477133	4.08239702237781	0.310400571867946	0.561392261410956	0.865407801976397
Merged-chr15-44427515-4	chr15	44427025	44428025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-586.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	6.44471948480535	6.17824967679762	6.15491794504291	6.18593199290748	6.24086882416899	6.15026760562322	-0.126316316430672	0.658195621310983	0.904942849604168
Merged-chr11-69696622-2	chr11	69696122	69697122	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	-524.0	NM_001159503	619441.0	Mm.8983	NM_001034097	ENSMUSG00000018752	Tnfsfm13	Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	protein-coding	5.00988665235418	5.09691304080895	5.28370667696259	4.81615480839091	4.7943640154479	4.80771268823246	-0.701386776112506	0.0648055416713095	0.331850283237962
Merged-chr1-171002585-2	chr1	171002085	171003085	+	758.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-16341.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	4.3642926659414	4.45909258149704	4.33174351303884	4.79030757430668	4.44731392643287	4.80751558076705	0.722269826940789	0.100252594920888	0.422220879595953
Merged-chr14-62245015-2	chr14	62244515	62245515	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47964.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	6.54904790649715	6.41364505462356	6.6902846420182	6.63263025174633	6.6141324914513	6.71793765714913	0.166023807766884	0.526930151716938	0.849710825989052
Merged-chr11-59163527-4	chr11	59163124	59164124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270791, exon 1 of 2)	exon (NM_001270791, exon 1 of 2)	121.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	8.23848277918476	8.32457498267681	8.13538255322899	8.20039966609907	8.08784896912288	7.94094212488312	-0.216982290833667	0.313758590105336	0.708155075935247
Merged-chr10-18931630-3	chr10	18931095	18932095	+	874.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80368.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.209005860064	3.28220071610217	3.12377809279119	3.80057668086678	3.60101638795953	3.50368828973208	1.66082363574112	0.00786192662335383	0.0849798896435471
Merged-chr15-79327484-4	chr15	79326994	79327994	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	877.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	8.37123789049145	8.26367046031547	7.42753865614299	8.26328485854537	8.28481486277858	7.46096857318307	-0.0410034950342974	0.93984947477578	0.986738777817436
Merged-chr12-111814018-4	chr12	111813502	111814502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028875)	promoter-TSS (NM_028875)	-123.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	6.01995325495148	6.15134507042518	6.24772284247348	5.7310310972675	5.87852738595694	5.65721299353623	-0.646630268727295	0.0332478767247865	0.222511809419773
Merged-chr17-73949774-4	chr17	73949255	73950255	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	441.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.99439809697823	8.10842838782032	7.67304849005003	8.16172568090323	8.4165786081054	7.93155559318288	0.349269574189511	0.166855196509675	0.54240433228749
Merged-chr11-6273955-3	chr11	6273463	6274463	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134020, intron 3 of 4)	intron (NM_134020, intron 3 of 4)	874.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	4.60494422954793	4.73647551174501	4.70918487577318	4.5771939317632	4.36714647319603	4.57707679451416	-0.440354208996969	0.293165233408866	0.690196017357506
Merged-chr15-6334987-4	chr15	6334471	6335471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	35182.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.29638833284621	5.25779118012377	5.2508216358808	4.84216828163214	5.11960572969441	5.25166353503285	-0.393925929355675	0.282791869836916	0.6807006950826
Merged-chr11-70432491-4	chr11	70431972	70432972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-108.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	8.21447164137832	8.02632204729752	7.89264445233274	8.07151445550063	8.07597701167289	7.72391297550572	-0.115471081548176	0.625285774861615	0.89246806537449
Merged-chr1-181232821-4	chr1	181232320	181233320	+	981.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20842.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	7.03801293326577	7.18661370631323	7.16688577361938	6.92528184049288	6.98669192168658	6.83352700553715	-0.31822034813738	0.188012087372779	0.573416108077913
Merged-chr7-102223791-6	chr7	102223265	102224265	+	739.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111938, intron 2 of 4)	PB1D10|SINE|Alu	737.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	5.44262781731351	5.51750947616111	5.65279685031763	6.08641178055737	6.04991942992536	6.23745243689323	1.05309723387179	0.000574451389883608	0.0117240498526945
Merged-chr9-50463595-2	chr9	50463095	50464095	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30930.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.30723185903652	3.47898527405919	3.55702203716902	3.38051114925039	3.57141597754434	3.77529137166579	0.480404684039693	0.417835163549645	0.788354647029293
Merged-chr16-70352097-1	chr16	70351597	70352597	+	571.0	f1_balb.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	38148.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.26699389142341	3.35601713920337	3.2912408407114	3.26249615958669	3.14492881988866	3.12839928456616	-0.525628807799645	0.400030859464659	0.7763444374189
Merged-chr2-112239721-4	chr2	112239228	112240228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-113.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	5.88353340339084	5.93015854809976	6.57067524316226	5.86033143021844	6.03010252240188	6.25746107459985	-0.172997311965451	0.618665019976432	0.889497316944952
Merged-chr7-141016987-4	chr7	141016509	141017509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-117.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	6.87904846375385	6.7271322605991	6.77393829363813	6.98310218450486	7.01544574097604	7.00478183854501	0.316709800458585	0.193115611966891	0.580267363879138
Merged-chr2-150829960-5	chr2	150829417	150830417	+	778.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 19 of 19)	intron (NM_153781, intron 19 of 19)	12653.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.26830630284586	5.35818853042884	5.15297822602003	4.7805634587706	5.03486006184636	5.40048226646865	-0.370930494112533	0.340938840505727	0.730599337545402
Merged-chr3-107119092-1	chr3	107118592	107119592	+	677.0	f1_balb.idr	Intergenic	Intergenic	17525.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.49542393901466	4.65970265471318	4.6665123856456	4.46105467033042	4.69626613170931	4.91300566239402	0.211728516878848	0.61882374945076	0.889515655407396
Merged-chr2-144280178-1	chr2	144279678	144280678	+	669.5	f0_balb.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9274.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	4.08661657550739	4.15860942937045	4.2786663900168	4.14097728227205	4.07720251966715	4.34493406147007	0.0340467724065999	0.942611377686046	0.987202156853573
Merged-chr11-54808361-4	chr11	54807846	54808846	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11573.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	6.11609160450111	5.62353336343861	5.51682967964493	6.18347980792555	5.61940750225874	6.09207067108431	0.341162060397675	0.354379415927653	0.741552937201367
Merged-chr7-58399878-2	chr7	58399378	58400378	+	794.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258324.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.46629163898049	3.7538428349629	3.55011454795375	3.6753210244923	3.56063002611473	3.87574649772897	0.352480750531212	0.536364235837205	0.853939276247874
Merged-chr12-69184645-4	chr12	69184125	69185125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	467.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	7.57913900204073	7.73526247543309	7.89324780446914	7.50630046961227	7.33647160472079	7.79426498922055	-0.270744096855524	0.278574191168276	0.675809828237847
Merged-chr14-55781428-4	chr14	55780862	55781862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 4 of 25)	intron (NM_080435, intron 4 of 25)	2710.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	3.57425988198712	3.46016239481913	3.61295666238784	3.58246076034661	3.47487465669509	3.40964344398971	-0.199959398172688	0.726984635101379	0.930086065338964
Merged-chr9-118662048-2	chr9	118661548	118662548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	ORR1E|LTR|ERVL-MaLR	-49644.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.12232698659477	8.45248437063493	7.99422014478479	8.40909717981067	8.50433785604323	7.8788649927801	0.126656362313997	0.637321587036894	0.897338937840938
Merged-chr16-91365920-4	chr16	91365392	91366392	+	697.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.93584720923175	4.76249266085354	4.60531650080836	4.30037291183311	4.34162423489348	3.99330687243506	-1.37234245210496	0.00353620208641607	0.0475225856155299
Merged-chr11-76894310-3	chr11	76893824	76894824	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10221.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	2.46327265940783	2.53171975050463	2.56703460721733	2.74220545395507	2.42482746189351	2.76522515078164	0.733929910168347	0.355844202475882	1
Merged-chr1-165775781-2	chr1	165775281	165776281	+	605.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011804)	TTS (NM_011804)	12023.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	2.71215101094838	2.43936196572289	2.61194717214022	2.65473732401461	2.58234510392534	2.80836597792271	0.490356778368611	0.528598891968009	1
Merged-chr14-33175332-4	chr14	33174841	33175841	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	9725.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	4.97513779930986	5.02046592833438	5.20025651045111	4.73507069955948	5.04923054164502	5.16986191528998	-0.145415793956738	0.707513307292042	0.923434045569648
Merged-chr2-35338619-3	chr2	35338157	35339157	+	824.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.53486138983791	6.84649095420978	7.036422902606	6.85959764268362	6.87160938711931	7.0179137302231	0.155036401929787	0.567378931635681	0.867939797427831
Merged-chr11-61659195-3	chr11	61658691	61659691	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	5870.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	3.23788744115106	3.3930821914925	3.57151678071631	3.46702371088405	3.41278549859867	3.69062661681634	0.45047529466465	0.452778308474135	0.809457484278845
Merged-chr3-9500121-2	chr3	9499621	9500621	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	MIR3|SINE|MIR	97043.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	3.99928795846364	3.63083468065198	3.56237588753454	3.72048323860562	3.72818414008287	3.32860339450702	-0.462903498717837	0.453814731610813	0.809979841654596
Merged-chr10-9876026-4	chr10	9875558	9876558	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	MTC|LTR|ERVL-MaLR	24982.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	3.58804000662454	3.52677726159225	4.13924704057562	3.70543519260186	3.64284724368853	3.85306348311256	-0.125249363131257	0.830598124386391	0.960362199059651
Merged-chr8-70613111-1	chr8	70612611	70613611	+	697.0	f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-3733.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	5.05557440253851	4.90660477933508	5.27140610853478	5.11096982312554	5.12249294405101	5.44592905105909	0.314642202174012	0.404841584270843	0.779791650050306
Merged-chr19-5818876-2	chr19	5818376	5819376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16204.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	4.41941464983677	4.14617533933354	4.44973103292827	4.443145909758	4.22444299306131	4.55611237620628	0.171130448808488	0.710656544382375	0.924424543407635
Merged-chr9-65565048-4	chr9	65564516	65565516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	RMER15|LTR|ERVL	15071.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.3415253014186	7.14318690296683	7.45351967929305	7.06826209908516	7.21984186090693	7.21917016477131	-0.212748621419821	0.38030720286505	0.762464628759352
Merged-chr10-100494586-1	chr10	100494086	100495086	+	540.0	f1_balb.idr	intron (NM_146009, intron 5 of 52)	intron (NM_146009, intron 5 of 52)	6297.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	5.4514293162052	5.83941531621122	5.62168454596357	6.14675356781364	6.35196148503863	5.90013369103466	0.888340775942963	0.0068300024038812	0.0767572717479939
Merged-chr12-102453019-3	chr12	102452509	102453509	+	854.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13196.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.94183438336186	8.04789364828682	8.03248440330544	8.0151741835437	8.20794310613826	8.00810428787284	0.109347940991347	0.608843620528279	0.885053989692691
Merged-chr1-87608562-4	chr1	87608060	87609060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11752.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	3.16119769415879	3.17752070778631	3.09301827318156	3.00187302345131	3.03898208094189	2.92047934015402	-0.70361163749168	0.291197787816133	0.688953904178097
Merged-chr4-106651023-4	chr4	106650526	106651526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285784)	promoter-TSS (NM_001285784)	-43.0	NM_001285783	230577.0	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	4.17007851299274	4.31960249105995	4.25084059712529	4.27912028064533	3.97554490283879	4.22834491167765	-0.244944543406123	0.605862941310832	0.883657807362598
Merged-chr10-18195262-3	chr10	18194805	18195805	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	15585.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.0529296853767	3.79282045803823	4.25818136884235	3.70283804819964	3.63724438873252	4.02417337481003	-0.779408760335421	0.155475246478779	0.525159710522295
Merged-chr8-13669731-3	chr8	13669242	13670242	+	789.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7845.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.70876262050143	3.74413579545458	3.99050025200512	3.94128271752475	3.74513050087951	3.86754267380389	0.122696272734591	0.815952070857732	0.956559729376138
Merged-chr9-113709105-4	chr9	113708586	113709586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164677)	promoter-TSS (NM_001164677)	-827.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	6.67720489540025	7.01636683778121	6.60008738489428	6.81512762664955	6.92069791199625	6.69341318189279	0.0504448474360606	0.853135837812315	0.965597129346461
Merged-chr5-130089931-6	chr5	130089455	130090455	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	10585.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	5.14192643424997	5.39048757525461	5.12153896005643	5.07429358939284	5.20638844603679	5.08134869847361	-0.21231866312729	0.558673542706357	0.864744077984264
Merged-chr6-28261015-4	chr6	28260531	28261531	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081678, intron 1 of 5)	CpG	570.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	5.37670940282077	4.36269648444909	4.97452287040767	5.19454118694445	4.52473719029043	5.03987459962429	-0.0558906505112462	0.912196085480478	0.980305193163948
Merged-chr11-75189682-2	chr11	75189182	75190182	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144491, intron 1 of 12)	intron (NM_144491, intron 1 of 12)	801.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	3.38705531004725	3.19524617321663	3.2774913727676	3.48534038093228	3.25167929516237	3.17017676585736	0.0876413006382348	0.889167316412446	0.974207858658472
Merged-chr5-112283719-4	chr5	112283235	112284235	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7044.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	6.1257300023432	6.07560281883551	6.20109530220312	6.2227738898083	6.15079392161457	6.35819562589566	0.18298386626102	0.51497148778605	0.843332957207274
Merged-chr7-110385663-4	chr7	110385157	110386157	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	163954.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.36987294896418	5.89565710714873	5.59047486457432	5.35193792805561	5.83403704188647	5.50934444481715	-0.0934068482244034	0.799704494278632	0.952270583452873
Merged-chr15-101264271-2	chr15	101263771	101264771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2575.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	4.0203462600783	4.02975916483394	4.54895639263336	4.43056043126076	4.33741437765148	5.01588233912622	1.03357936127411	0.046332331834497	0.272357517999634
Merged-chr11-55007701-2	chr11	55007201	55008201	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 7 of 24)	intron (NR_138556, intron 7 of 24)	25770.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	5.81155883639815	5.46474790251778	5.34659351960355	5.31641764343899	5.18988330353917	4.94292721583303	-0.779358763628615	0.0365997167361254	0.235456102534369
Merged-chr3-95671923-2	chr3	95671423	95672423	+	750.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	13202.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.71286769877746	5.85526081413532	5.90490379527495	5.94737478675405	6.04036504310777	6.07876616410981	0.350845586853787	0.237188934107579	0.633631301431805
Merged-chr13-100213898-2	chr13	100213398	100214398	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010870, intron 14 of 14)	intron (NM_010870, intron 14 of 14)	-11776.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	2.73255978527295	2.84988035287754	2.81198060563798	2.89053048759205	2.93772228501365	3.0052507018696	0.717535004564321	0.305113920112287	0.701414919711867
Merged-chr1-20940284-3	chr1	20939789	20940789	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028829)	TTS (NM_028829)	-11337.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	3.98722206846791	3.82539084923979	3.71747253626857	3.0870025810513	2.95126833028489	3.15119231697752	-3.69594302159754	1.51169595538278e-06	7.78373744155261e-05
Merged-chr4-149462413-3	chr4	149461917	149462917	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7449.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	3.29234558700957	3.09625603286931	2.94830579648743	3.41663393187493	3.06199096346371	3.38345085180997	0.697783664033551	0.307817986772862	0.703881338697182
Merged-chr3-65533193-4	chr3	65532659	65533659	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-3745.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.50071388985818	4.50778799580319	4.56726642361815	4.56351962394227	4.90283821625691	4.67467100182756	0.496004665836683	0.236809995971613	0.633237835240546
Merged-chr2-132596675-2	chr2	132596175	132597175	+	953.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1521.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	6.52507437642951	6.54350264695675	6.62562698374228	5.77146475833585	5.99768532990695	5.84285732991494	-1.14142028461591	6.60080480144375e-05	0.00199144222595552
Merged-chr3-100442680-4	chr3	100442194	100443194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	16289.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	5.52000280158046	5.27643629587718	4.71731428148096	5.53343490090497	5.42864785393389	4.92112612050774	0.205545772802224	0.642677016970657	0.899466331938237
Merged-chr3-101604713-4	chr3	101604202	101605202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	5.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	8.21565755955218	8.29511546387524	8.05450510961665	7.9475201265053	8.05573764861679	7.97705520434758	-0.283528893893074	0.183394248774841	0.566502158817128
Merged-chr17-79615276-4	chr17	79614776	79615776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 1 of 10)	CpG	376.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	5.93337263184706	6.26863446386836	6.23775116202927	5.97193728911135	5.88785044741387	6.00147919181789	-0.348219088628203	0.245094964612719	0.642381314494918
Merged-chr13-119428891-4	chr13	119428394	119429394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145457)	promoter-TSS (NM_145457)	-8.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	6.76447770271822	6.3896276687339	6.68060668423375	6.95529307338659	6.28707268218529	6.625870805284	0.0473876908452207	0.879134482810376	0.972080769224549
Merged-chr2-124622207-4	chr2	124621691	124622691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	MTE2a|LTR|ERVL-MaLR	11895.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.9241613945177	7.18705185470257	6.75384511941034	6.62724123881287	6.86198049851325	6.71602666370102	-0.360235061823189	0.181356936020437	0.563676583728803
Merged-chr6-108784969-4	chr6	108784471	108785471	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1912.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	4.36051641185567	4.27301120332659	4.18777562504746	4.11581279599858	4.18538352866338	4.34525563579002	-0.182218952021766	0.6930793671558	0.918823160537068
Merged-chr1-107516089-4	chr1	107515583	107516583	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 2 of 7)	intron (NM_011111, intron 2 of 7)	4573.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	2.854444296954	2.8933141283775	2.66350637688391	3.00144824035372	2.6691624595533	3.04939662617493	0.502861784817386	0.505351629873705	0.838055364884185
Merged-chr10-23177503-8	chr10	23176946	23177946	+	927.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	172444.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	6.03034184593354	6.13941050097844	5.88021357502524	5.84531816607164	6.10567102392657	5.84022495030413	-0.141681364256186	0.643003143464659	0.89955790576874
Merged-chr14-30592766-1	chr14	30592266	30593266	+	634.0	f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	17544.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	7.13327142789642	7.06583166524869	6.99593639526531	7.20363712539156	7.44682454323477	6.99812213764896	0.257805322915623	0.31187176504668	0.70674399003225
Merged-chr1-167392905-3	chr1	167392408	167393408	+	780.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025569, intron 1 of 5)	intron (NM_025569, intron 1 of 5)	889.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	2.92573375937996	2.90549313556687	2.70970983833398	3.07831504125503	2.84653277022071	2.97625437927126	0.544057836211075	0.448405198435743	0.807245803917729
Merged-chr5-136135581-2	chr5	136135081	136136081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	493.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	6.39025320138798	6.35234235247586	6.27168083189239	5.86336952960661	6.19918795920536	6.21043421067158	-0.403286039309288	0.165100737501077	0.539834256758472
Merged-chr1-128016321-4	chr1	128015823	128016823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	86148.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	6.14784873064466	6.11219218106052	5.95466491103489	6.05656573862172	5.99460124827561	5.61152058244402	-0.285736807090016	0.360854075020399	0.746938274913623
Merged-chr10-111118551-4	chr10	111118057	111119057	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-46245.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.54615797059345	3.78065515760219	3.61093710472767	3.24874617034939	3.38226543293532	3.52181342632564	-0.986691150918042	0.0962373482164468	0.413536318446298
Merged-chr4-99194698-4	chr4	99194212	99195212	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	565.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	7.84376818440899	8.14320816360409	7.80242465370277	8.41984126657328	8.48629435300215	7.79647505106097	0.472194214800164	0.0826878526881879	0.380420814247414
Merged-chr14-77905962-4	chr14	77905451	77906451	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1712.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	5.57240677110806	5.35828869790164	5.27516383140308	6.2747384356414	6.42124015020067	6.35050370997372	1.64963298172842	1.32454846689009e-07	9.15390604925173e-06
Merged-chr17-34605808-4	chr17	34605319	34606319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-42.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	7.38410638254551	7.21262558137504	7.32033995535166	7.41121930689221	7.53663354359626	7.30964003051209	0.180313490289222	0.439475810696534	0.801172211652108
Merged-chr11-72940383-2	chr11	72939883	72940883	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20786.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	3.40385406367566	3.51158252093433	3.6143013247517	3.45241584985597	3.11678957453703	3.24497513981011	-0.909419860839611	0.144639127281211	0.507490301615645
Merged-chr19-29251365-4	chr19	29250870	29251870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-433.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	7.69730783300708	7.33834589886075	7.37270207388719	7.43236575765519	7.15017847760089	7.34180270608657	-0.256160991676202	0.307740060855828	0.703816371678414
Merged-chr1-120533117-2	chr1	120532623	120533623	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28099.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.96267620175687	5.80611993224778	5.73193892875611	6.62547692578797	6.54429940741261	6.41057248913286	1.15763618850127	5.56295675864789e-05	0.00172524228838454
Merged-chr15-79076107-2	chr15	79075607	79076607	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145139, intron 2 of 12)	intron (NM_145139, intron 2 of 12)	884.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	3.41327183714732	3.27275190190551	3.54597231349778	3.50613819276121	3.23103535488314	3.22590258495625	-0.318541945097581	0.607805696185619	0.884738316187272
Merged-chr8-123750452-4	chr8	123749936	123750936	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16478.0	NR_040702	234863.0	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	2.94439894623575	3.03831406762431	3.07752587572139	2.82997549739862	2.68853873212032	3.25779338348071	-0.358031121599814	0.628928842253751	0.89397074295706
Merged-chr2-152414809-4	chr2	152414298	152415298	+	881.582153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289738)	promoter-TSS (NM_001289738)	246.0	NM_175126	67917.0	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	3.66679546542731	3.80275687695589	3.44322616096031	3.4338069564717	3.40644336837412	3.72775408661317	-0.465716509331341	0.431821120075828	0.797102108819786
Merged-chr2-132578214-4	chr2	132577715	132578715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	33.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	8.37017006775705	7.95752100939786	7.79576857916044	8.14598429253705	7.94203361571473	7.66830829564212	-0.187921093824085	0.481847936362682	0.825208669475694
Merged-chr16-16526347-4	chr16	16525832	16526832	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1079.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	8.35134536947258	8.53263740526288	8.08451866024387	8.14372035552651	8.30221735453146	7.98349447786396	-0.263605311671857	0.266445627654209	0.664166899200562
Merged-chr18-77944887-4	chr18	77944388	77945388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	L1MC4a|LINE|L1	6421.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	6.21757278870933	6.2101464656496	5.60467373086977	6.73759563269772	6.70719357349326	6.39271127494435	0.931861172832123	0.00442325363125762	0.0561565590707483
Merged-chr2-113397889-4	chr2	113397400	113398400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43164.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.50916633906396	7.62531779780783	6.95138617751759	6.9721698762131	7.06186178058023	6.6871607389834	-0.718542048499448	0.0136300471971799	0.124547437643636
Merged-chr2-125651716-2	chr2	125651216	125652216	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 9 of 11)	intron (NM_199022, intron 9 of 11)	-21384.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	2.44320664221407	2.37393190846579	2.46691785624412	2.51450496503995	2.39301842440956	2.60371179354945	0.460352110454409	0.563875082242453	1
Merged-chr6-124320553-2	chr6	124320053	124321053	+	569.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 11 of 17)	exon (NM_053094, exon 11 of 17)	15902.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.87824029336935	4.71268932131062	4.89372112079538	4.62540272308677	4.49611163373681	5.05769624358524	-0.214439832538531	0.615937234677864	0.888138242523753
Merged-chr7-101971259-5	chr7	101970817	101971817	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 1 of 24)	intron (NM_133947, intron 1 of 24)	1474.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	6.97675925704932	7.17024532662351	7.33578790335532	7.20571932660518	7.21409151506933	7.23722276459131	0.0838671432608048	0.730583369236219	0.930911472656386
Merged-chr6-51544571-4	chr6	51544032	51545032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	9.0	NM_001127348	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	7.43838152993297	7.62097191915475	7.33471553475988	7.53070740928699	7.75748751388543	7.13129063375052	0.0527971308370273	0.844377475121816	0.96373428957366
Merged-chr12-86079541-4	chr12	86079049	86080049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-508.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.49293642570236	6.90861118838054	6.44373550630635	6.36630580530481	6.56878651105051	6.14942591100772	-0.411736917782907	0.175733664020553	0.555774586970482
Merged-chr18-38246167-3	chr18	38245664	38246664	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	intron (NR_015475, intron 1 of 3)	4034.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	3.48418807652858	3.79714428995278	3.83288381742722	3.54109315827343	3.46393783746482	3.9471035544468	-0.174747263447665	0.767102718110359	0.942573703853445
Merged-chr11-78184291-2	chr11	78183791	78184791	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	-707.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	4.26161491796501	3.93363943539491	4.1650567126034	4.3418947327568	4.64821176843023	3.92198160095944	0.598530721897904	0.257272663696778	0.654575484420673
Merged-chr7-138847642-3	chr7	138847120	138848120	+	736.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	1234.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	4.53377067654156	4.5460210386642	4.31428238903909	4.57625974051448	4.49181974126107	4.55973019255686	0.156874038716784	0.714494966071973	0.925924007318889
Merged-chr1-191351267-4	chr1	191350772	191351772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144880)	TTS (NM_144880)	25307.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	4.89621704833557	5.35513408479317	5.37908870800733	5.23330988780734	5.60031048834929	5.63384380452212	0.541998023490616	0.153822881510689	0.522889710137323
Merged-chr1-65184757-2	chr1	65184257	65185257	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1722.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	2.93854047264694	2.86017001985951	2.75850719751294	2.90109561087054	2.77776620656799	3.07116300843806	0.287656119488043	0.687229455499678	0.916996560772578
Merged-chr11-46454868-4	chr11	46454362	46455362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134250)	promoter-TSS (NM_134250)	-69.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	5.06063271821694	5.07132665390539	5.44860436183731	4.5637579014653	4.6640640697637	4.5291630482155	-1.34369097971382	0.00107279367576304	0.0190249395082889
Merged-chr6-88522392-2	chr6	88521892	88522892	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3592.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	2.87016075022531	3.02235083941853	3.14160711843317	2.83687146840094	2.65175369274994	2.98742807612021	-0.921898592507398	0.20616276342507	0.596809057329073
Merged-chr14-27116819-4	chr14	27116326	27117326	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27167.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.59877021477516	3.23097487528948	3.45555595136206	3.13899481074982	2.96498246570225	3.4735779811668	-0.94296657215271	0.163737909620333	0.537791628272111
Merged-chr8-106415330-4	chr8	106414820	106415820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011764)	promoter-TSS (NM_011764)	-19.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	6.90136218870518	7.10354893960481	6.84304911738065	7.04991274211782	7.17246291899906	6.91606773400595	0.148830905662646	0.555480532085545	0.863239342468185
Merged-chr11-43681861-4	chr11	43681351	43682351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164231)	promoter-TSS (NM_001164231)	-147.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	7.16449135479021	6.82784997259983	6.89271312838311	7.0778355889732	6.45584057583587	6.9787269904997	-0.173657875097637	0.559043214425953	0.864901733108576
Merged-chr2-166683130-4	chr2	166682638	166683638	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	30694.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.8673136135228	6.60378967021838	6.40748471485588	7.09512387155415	6.96544357244506	6.13141439231424	0.252172416142347	0.469125329774527	0.818899830283793
Merged-chr8-46932068-4	chr8	46931552	46932552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-54835.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.55708171735472	7.66068811165728	7.54614019001671	7.57614380933331	7.86748831563916	7.58335705271195	0.143573484019349	0.535364884630161	0.853511885485043
Merged-chr7-97211319-4	chr7	97210811	97211811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	114653.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	7.06606359432258	7.4128611473884	6.93726235193584	7.04521254070259	7.53962998004863	7.03823257782667	0.116843758502734	0.686283606967761	0.91666056197145
Merged-chr1-56973257-4	chr1	56972767	56973767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	1798.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	4.89783329625513	4.89110140875129	5.0570148606879	5.12666913863339	4.64575468656292	5.01971024704528	-0.0156844221002129	0.968933920938856	0.992882522302438
Merged-chr19-46329276-2	chr19	46328776	46329776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164295)	TTS (NM_001164295)	1092.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	4.70616566551773	4.44980285723082	4.56501761816225	4.69520560956315	4.4931693365335	4.78721211699198	0.184352145530811	0.664127969418759	0.90751097049737
Merged-chr5-137821863-2	chr5	137821363	137822363	+	611.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153510)	TTS (NM_153510)	14415.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	3.58432933429313	3.38591980067095	3.64700364138756	3.56585595441177	3.05651157357462	3.71655266809815	-0.244467246174669	0.711257544947741	0.924628659085065
Merged-chr8-119840607-4	chr8	119840094	119841094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-15.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.23727254288148	7.37905168709088	7.20411890912295	7.43070638832195	7.44494392602777	7.26148742361593	0.159024497437569	0.495447719791454	0.832500902975543
Merged-chr10-127587895-4	chr10	127587400	127588400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33248.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.96093410153142	5.82568765943507	6.26380270681523	5.91127451105123	5.92995545372808	5.77157409014761	-0.245005652470529	0.434467921489911	0.798410009305253
Merged-chr7-19844758-4	chr7	19844262	19845262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7241.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	6.37828732472915	6.22226562283905	5.82365906577602	6.09572398418682	5.7877103466118	6.12541616558174	-0.290431601864531	0.369753202676503	0.754342005045842
Merged-chr3-61344717-4	chr3	61344207	61345207	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-19800.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.09017725776801	4.6655304413867	5.07920323881909	5.11585877476374	4.76680382326621	5.49152415711728	0.404335211119967	0.350572132140549	0.738596934645462
Merged-chr2-163749242-1	chr2	163748742	163749742	+	656.0	f0_balb.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	997.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.0693147452831	3.33641993573087	3.17375687365577	2.93083320892439	2.98659111161721	3.0705440325452	-0.921088417761691	0.16912159022931	0.545754092681809
Merged-chr9-98296655-4	chr9	98296175	98297175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357446, exon 1 of 4)	5' UTR (NM_001357446, exon 1 of 4)	105.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	7.57621137089317	8.16738950865693	7.61623643011814	7.90311768358552	8.00136927632833	7.45492829060648	-0.0117064476733631	0.967488760621951	0.992562878132707
Merged-chr10-8881958-4	chr10	8881498	8882498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4072.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.74695570613559	7.55745229097713	7.42266504474658	7.44470185880348	7.6710994678548	7.55141950252394	-0.038258440264345	0.871370103370825	0.970222087171093
Merged-chr9-78113279-4	chr9	78112775	78113775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019987)	promoter-TSS (NM_019987)	37.0	NM_019987	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	5.25123949051189	5.04082213959581	4.97622204776311	4.83340761995922	4.48582164823124	4.56130743753496	-1.04659927130023	0.0101376783799579	0.10136849134355
Merged-chr16-4736444-3	chr16	4735948	4736948	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	-5165.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.05836743278497	4.47857498966787	4.55869880499072	4.34194670492651	4.12907820207118	4.24837324709513	-0.367753527511326	0.446446750910015	0.805889760011081
Merged-chr1-152626411-2	chr1	152625911	152626911	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-1194.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.50657466046585	2.29649322039845	2.32302991820964	2.55495847953776	2.35708444393952	2.71778157159875	1.00919564947762	0.233485995544742	1
Merged-chr18-38440879-2	chr18	38440379	38441379	+	958.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21972.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.56327928241637	4.21770459845736	4.48306334540064	4.82106324224954	4.83055119157621	4.82937025033095	0.960308004883303	0.0233734592355211	0.179043673369336
Merged-chr19-34528315-2	chr19	34527815	34528815	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-841.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	3.10940805227152	3.08036902868561	2.94605660934264	2.93028206117974	2.99024852503939	3.13687991341585	-0.150580981703217	0.822620011990722	0.958134952997982
Merged-chr9-62839521-3	chr9	62839076	62840076	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 1 of 6)	PB1D9|SINE|Alu	789.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	5.13354108433299	5.18027626192036	5.39138708799167	5.05043386535731	5.31776469409895	5.21104684085604	-0.058926280610742	0.870421092228578	0.970065609722504
Merged-chr9-74952916-4	chr9	74952431	74953431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	51.0	NR_153342	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	7.61452661390444	7.85502942082804	7.17673504722381	7.72871627504186	7.84972168403551	7.64552556774552	0.226731552410743	0.396110896116681	0.773332291042782
Merged-chr8-122569552-3	chr8	122569127	122570127	+	854.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026014, intron 3 of 9)	intron (NM_026014, intron 3 of 9)	1612.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	2.64022793791108	2.59672668615872	2.89882542482985	2.44654909033277	2.48752779839086	2.67895961619269	-1.00637674923714	0.205048509382515	1
Merged-chr13-47231277-4	chr13	47230752	47231752	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	37249.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.71841010247499	7.69254070800547	7.6129136404284	7.06798803324527	7.49436655890941	7.22426434822022	-0.577574529292425	0.0187540107806539	0.154948240396847
Merged-chr5-113945385-4	chr5	113944877	113945877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 14 of 14)	intron (NM_198109, intron 14 of 14)	-36671.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	6.03371405309979	6.28490615117802	5.92145181883165	5.82211160120072	5.70726791312257	5.9827701867909	-0.463368415914019	0.135085964829236	0.491223853222672
Merged-chr8-11098596-4	chr8	11098099	11099099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90169.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	7.19898667830937	7.01717031958083	6.39505417929303	5.69040067115458	5.68807893256528	5.15549748846039	-2.30136820807284	1.27929739352514e-09	1.3860387697974e-07
Merged-chr16-17409697-3	chr16	17409199	17410199	+	948.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-3385.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	6.89846425290801	6.93208603047391	6.93961073494969	6.53189744381934	6.65074232861664	6.47284744901839	-0.566696803697646	0.024883326466174	0.186487051067628
Merged-chr9-44361711-4	chr9	44361187	44362187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357393)	promoter-TSS (NM_001357393)	-17.0	NM_027889	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	7.7288095392266	8.10845609489664	7.70604122580804	7.74874906402546	7.87588358003922	7.19525800809041	-0.310107116749131	0.272532173896926	0.669763634166678
Merged-chr15-96712588-2	chr15	96712088	96713088	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12860.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.52766019308355	4.4912268751045	4.46508233976841	4.73817302846559	4.48962672622255	4.44457282824402	0.170782033167043	0.689699478898004	0.917467574301692
Merged-chr2-142883032-4	chr2	142882530	142883530	+	848.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	18434.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.24659087336162	5.06224224393247	4.65636612061708	4.62715999082251	4.75224410886398	4.63772340921221	-0.77246539250153	0.0661231206264526	0.335588448983584
Merged-chr12-116433906-4	chr12	116433388	116434388	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 16 of 28)	intron (NM_133762, intron 16 of 28)	28486.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.75353241425576	4.29254374408978	4.71649688791605	6.45581063390476	6.65394477437248	5.94971374732719	3.57095160515146	4.75137866980798e-18	2.35328997831775e-15
Merged-chr4-124709153-4	chr4	124708630	124709630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010213)	TTS (NM_010213)	-5731.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	7.81845616817358	7.82742614317662	8.14210915202282	7.91067970878617	8.16129327839913	8.04183467188063	0.158959532156691	0.4904983357558	0.830053405840466
Merged-chr6-51663385-4	chr6	51662860	51663860	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	118067.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.76290235390601	3.77361371673345	3.63260201025879	4.12172686175722	3.96755403208218	4.24628496556272	1.17070007224406	0.0250934442443508	0.187416902022687
Merged-chr7-27197158-2	chr7	27196658	27197658	+	993.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-887.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	6.75129009741482	7.01962419133023	6.93333459537071	7.24801714247817	7.50967138715798	7.04717847781864	0.583064059471507	0.0269825131395053	0.19557151161254
Merged-chr11-62539644-1	chr11	62539144	62540144	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_028448)	promoter-TSS (NM_028448)	-383.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	5.82623930117737	5.75242127904732	5.98786567999345	5.83344979696159	5.66490377862286	5.53701203969754	-0.294724100015307	0.351924153962622	0.739579355531693
Merged-chr15-80255546-1	chr15	80255046	80256046	+	1000.0	f0_balb.idr	5' UTR (NM_009716, exon 1 of 3)	5' UTR (NM_009716, exon 1 of 3)	362.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	9.21743405376885	9.31448202599525	9.01919852171236	9.03824679796575	9.27385680681817	8.92796031685929	-0.136080346391698	0.529027638858344	0.850706402188603
Merged-chr2-33430294-3	chr2	33429784	33430784	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1040.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	5.7121839052277	6.11469741222953	6.25330613156302	6.02747935454145	6.08116626908795	6.06769469901571	0.0353540581530793	0.910528649964929	0.979866372300592
Merged-chr12-72085080-4	chr12	72084643	72085643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	170.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	6.3537150674238	6.50158410745069	6.29509005902375	6.38809987167618	6.55173655492757	6.06894960218308	-0.0405931576358939	0.890025372141914	0.974360328989611
Merged-chr3-105020510-4	chr3	105019994	105020994	+	823.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	32459.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.88713520824017	6.94004908611785	6.76822440868421	6.55616759489062	6.76372997018777	6.90010409268816	-0.199336709973131	0.441981666627171	0.803032582797918
Merged-chr3-96269120-4	chr3	96268642	96269642	+	862.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	488.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	7.35084692790545	7.51753006165129	7.50526715657161	7.64115595056033	7.87236417221951	7.52187047123752	0.34322625620316	0.146291135972351	0.510188727188373
Merged-chr5-92256706-4	chr5	92256205	92257205	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011148)	promoter-TSS (NM_011148)	-427.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	4.2566726891246	3.93339048303798	3.93230456791839	4.09771140203753	3.99611876000297	3.89826749453579	-0.154994974813863	0.76030988171392	0.940712904146702
Merged-chr3-27273434-2	chr3	27272934	27273934	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-43643.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.1647915180873	4.13773922052697	4.45126489272713	4.59059869425857	4.77246340063286	4.51856504286979	1.00149842555499	0.0248798026090957	0.186487051067628
Merged-chr13-24803395-2	chr13	24802864	24803864	+	886.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	1707.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	6.42692505972726	6.82314578493296	6.47221136629845	7.2099600324151	7.40752566043281	6.41132561507901	0.76543951612404	0.0251388232283752	0.187685168522803
Merged-chr6-51362786-4	chr6	51362286	51363286	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16924.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	2.3559537356116	2.35559852589108	2.41272723543149	2.46228603262864	2.28351833923168	2.55010945243402	0.366418745240843	0.654974812208564	1
Merged-chr3-8989043-4	chr3	8988545	8989545	+	850.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	15159.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.52335121542887	4.79163003626967	4.78470396019006	4.62651143529506	5.09008878235948	4.85029628505581	0.397615549086506	0.344798473591583	0.733368210920794
Merged-chr8-45333247-4	chr8	45332740	45333740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-44.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	8.49595225710088	8.8829228408282	8.55807346753334	8.66551306675569	8.89963234309554	8.54421429039825	0.0769536131515635	0.740505166919531	0.934552091262688
Merged-chr9-106686807-1	chr9	106686307	106687307	+	679.0	f1_balb.idr	promoter-TSS (NM_001286498)	promoter-TSS (NM_001286498)	-855.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	3.04663223353565	3.25260230611354	3.36143472372828	3.18611306013495	3.10855494477404	3.21188185172742	-0.233162086749785	0.716451887451429	0.926597893141715
Merged-chr17-40879494-1	chr17	40878994	40879994	+	580.0	f1_balb.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	1064.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	3.64106687404911	3.82134660971346	3.8862996283697	4.66258313842558	4.79650244334354	4.96319881047474	2.90866721078078	1.2153129538726e-08	1.07578468367905e-06
Merged-chr2-59184689-4	chr2	59184195	59185195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23845.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	8.50273545530374	8.42080347346708	7.99295409708137	8.42663478610166	8.76698370540613	8.11720720539057	0.197556457716118	0.465382687499509	0.816993516517273
Merged-chr2-119297228-1	chr2	119296728	119297728	+	721.0	f1_c57bl6.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8486.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	2.26010419890415	2.12468901444801	2.29440324872139	1.97060277256316	1.99253303452039	2.10792306645143	-1.62521934698009	0.0869230580007405	1
Merged-chr6-113343067-2	chr6	113342567	113343567	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	855.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	5.61064177043638	5.78661527612493	5.88349936851982	5.21644644416169	5.44117263984957	5.35899464224938	-0.780527239794031	0.0197000314699855	0.159875179806355
Merged-chr18-82822836-2	chr18	82822336	82823336	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-33061.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.62633517424505	4.72033397063151	4.34292551296235	4.95267552658698	5.10622058826149	4.4639634843115	0.685563568896178	0.133932848194465	0.489320941056643
Merged-chr6-100833995-3	chr6	100833516	100834516	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 1 of 8)	CpG	378.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	7.05251018321405	6.74119004927047	6.77542050145763	7.01233678844708	6.45390793799442	6.89305773204332	-0.100358067144563	0.730311610853792	0.930858074903207
Merged-chr10-30600667-4	chr10	30600174	30601174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028604)	promoter-TSS (NM_028604)	26.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	5.79168987758529	5.47742316173812	5.64512783818883	5.64120976336025	5.41038073646297	5.5984957255925	-0.180927425271414	0.585892480814876	0.875147049575346
Merged-chr16-91396811-2	chr16	91396339	91397339	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-9396.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.13134711115657	6.00306742933709	6.50607162366654	6.06060273974855	6.28970917066295	6.3751726141354	0.0453508610705358	0.883160490596087	0.973347392063704
Merged-chr4-11454099-4	chr4	11453597	11454597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31861.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	5.19143085306543	5.42253048149105	5.25250291965116	5.61702872690473	5.78110272017099	5.56351958282675	0.702740751904412	0.0366304868344227	0.235526789102792
Merged-chr6-114782146-4	chr6	114781629	114782629	+	815.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	139032.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.28277379859213	4.40632604943021	4.38236186390752	4.06157101364556	4.06123814990469	4.08929108199824	-0.806693706137793	0.0818489439555892	0.378549659755248
Merged-chr11-106716794-4	chr11	106716308	106717308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	5.53222652822905	5.15684408839381	5.41372940141172	5.25505461516974	5.08847353667887	5.38865397527782	-0.270055903635971	0.456436379543462	0.811641875260239
Merged-chr11-117786407-2	chr11	117785907	117786907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 8 of 16)	exon (NM_001195088, exon 8 of 16)	3749.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	2.983317043837	2.80674857810383	3.08437750757306	2.93285574378817	2.81698740655869	3.26425284316397	0.240067293534034	0.736626578874214	0.933215757921375
Merged-chr13-100197161-4	chr13	100196656	100197656	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	4966.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	5.58101120864763	5.56425011703292	5.20948576343244	5.72114380617561	5.78223189484843	5.6783665042223	0.473579280050336	0.155801884792176	0.525824781742472
Merged-chr1-155903699-2	chr1	155903202	155904202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 22 of 37)	RMER1B|Other|Other	69553.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	3.40112945754222	3.31463239388634	3.50348950346349	3.54252050450084	3.40067317383186	3.91362790897771	0.804998806225997	0.182879636999396	0.565815752043048
Merged-chr15-88863221-4	chr15	88862741	88863741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145478, exon 4 of 6)	exon (NM_145478, exon 4 of 6)	1047.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	8.02890177781979	8.00839055955232	7.88861573805963	7.47667263160491	7.19912174028304	7.28670684976922	-0.949601341231189	3.08850198050833e-05	0.00105473465911718
Merged-chr2-180070589-4	chr2	180070029	180071029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083328)	promoter-TSS (NM_001083328)	-64.0	NM_001083328	52856.0	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	7.06018641807119	7.41960317117303	7.22529593264001	7.19367689098239	7.37638485731896	7.04194652671476	-0.0392112704952521	0.878488404847774	0.971925535382153
Merged-chr6-72364284-2	chr6	72363784	72364784	+	952.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331167, intron 1 of 5)	B2_Mm2|SINE|B2	-1852.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	3.42923937904801	3.57346547933782	3.83809350154707	3.70367649090257	3.81747517468031	3.75964883167256	0.498497710920601	0.373173083156968	0.757045911810206
Merged-chr11-22858242-4	chr11	22857742	22858742	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1493.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	7.06053779257577	7.1054398744003	6.76398616165414	7.13908262182801	7.29154876684414	7.38039470899773	0.416646517836643	0.0989947663546852	0.419577424863619
Merged-chr1-91299189-4	chr1	91298731	91299731	+	849.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	893.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	7.06100744034031	7.4175929104048	6.98020799540664	6.82730338082014	7.22990425396522	6.8476586369645	-0.275689118339061	0.325475610546168	0.718159390122652
Merged-chr14-57366978-4	chr14	57366503	57367503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	31480.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	4.90901259073877	5.40342610885861	5.22121148592913	5.38276398063989	5.36391615239489	4.75324137806675	0.0270920160412097	0.948562369311281	0.988151190239158
Merged-chr6-67041554-2	chr6	67041054	67042054	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	MTC|LTR|ERVL-MaLR	-4147.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.35533982961581	3.24036046991111	3.56404631093069	3.28278090953714	3.06550171452894	3.4284053756429	-0.509648914292351	0.42476376686983	0.792833924352381
Merged-chr9-108850930-2	chr9	108850430	108851430	+	893.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 35 of 35)	intron (NM_001359572, intron 35 of 35)	-3113.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	2.8461658215137	2.84433403313818	3.22673374753061	3.30262812249883	2.88845359381481	3.40396223077142	1.01870503265584	0.161161593580867	0.533909498150735
Merged-chr10-67548278-6	chr10	67547813	67548813	+	990.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005419, exon 1 of 1)	exon (NM_001005419, exon 1 of 1)	642.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	7.52847293137783	7.51123262453281	7.56235542546251	7.54000293565405	7.36317371531913	7.04399032923673	-0.283789151048415	0.252539940766015	0.649921954382832
Merged-chr17-74527381-4	chr17	74526869	74527869	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-926.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	7.22680878820245	7.52687922862081	7.35533866725474	7.33484191579525	7.78254893130834	7.36822658408843	0.21089763324065	0.418333792842929	0.788588731807313
Merged-chr10-75675388-2	chr10	75674888	75675888	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31380.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	5.38410281408716	5.44999921297243	5.00128276054686	4.85728915624245	5.18423267707065	4.99212920552169	-0.571080328151474	0.139985448438804	0.500025673938934
Merged-chr17-35046839-4	chr17	35046317	35047317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-72.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	5.53027088890356	5.28243686743674	5.36133643076476	5.88332999571936	5.66093548389011	5.97665372161742	0.819686130626546	0.0137270949358798	0.125131914485614
Merged-chr11-8610621-4	chr11	8610142	8611142	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53893.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.78587351781727	6.84285608933518	6.1896082327853	6.40661281319448	6.49043234492474	6.6534896087448	-0.214855950676204	0.481539003055488	0.825121444939066
Merged-chr10-8862140-4	chr10	8861650	8862650	+	974.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	23920.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.86762063283504	5.40669497955525	5.52281339213928	5.50370277248815	5.88579612268227	5.22782279021389	-0.0634595395317187	0.867835494865321	0.969442397421746
Merged-chr1-40240658-4	chr1	40240160	40241160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	15580.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	2.88388622743647	2.71812562024536	2.85522378633217	2.67788965663465	2.72087148385258	2.8070693700644	-0.447550194198694	0.536832608994366	0.854215768737235
Merged-chr8-22700824-2	chr8	22700325	22701325	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	5758.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	4.44967474207399	4.5315285123063	4.69208924865389	4.71653132460651	4.33316278931007	4.68146014211923	0.0596122851679528	0.891864837102155	0.974942585822634
Merged-chr10-8067082-4	chr10	8066582	8067582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110959.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	5.57370944279273	5.17531212254945	5.41174861038757	5.52942862549994	5.42523923884939	5.69442267542361	0.286771798966692	0.411564911960801	0.783993055982259
Merged-chr19-46340388-1	chr19	46339888	46340888	+	542.0	f1_balb.idr	Intergenic	CYRA11_Mm|Unknown|Y-chromosome	-1728.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	5.73734230333631	5.43855678156985	5.16994311978014	5.62062148764831	5.95819275015366	5.59467936149232	0.486796104571262	0.180367166815819	0.562179561184932
Merged-chr10-8758040-5	chr10	8757511	8758511	+	865.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128059.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.33849026588842	6.3498756214725	6.43638756923271	6.41425950258464	6.52637277487143	6.49573202101508	0.17748209660453	0.502072513189867	0.836264906667917
Merged-chr2-45110389-4	chr2	45109886	45110886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110572)	promoter-TSS (NR_110572)	-9.0	NM_001355291	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.9108521290901	7.98255322013487	8.0096573367471	8.16832507011427	8.15650869727435	8.27760622183339	0.329721698785851	0.111582260906388	0.4462432358694
Merged-chr10-30771780-1	chr10	30771280	30772280	+	571.0	f0_balb.idr	5' UTR (NM_001358841, exon 2 of 16)	5' UTR (NM_001358841, exon 2 of 16)	31546.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.04545580846959	6.41184763891736	6.38783608134294	5.94890067370177	5.83482071919098	6.00255778465145	-0.62343377259914	0.0382272358211384	0.241942027702539
Merged-chr8-71380570-4	chr8	71380064	71381064	+	881.7976070000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010150, intron 1 of 3)	CpG	1388.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	4.28913599589501	4.43835453703017	4.5874710101336	4.21358547169132	4.27621675930494	4.61474803085784	-0.174546189679384	0.704256657953148	0.9223772679418
Merged-chr17-50369462-4	chr17	50368953	50369953	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75833.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.59131107925459	4.34085276959467	4.620487203375	4.89512970274072	4.91446796955244	4.47089003991087	0.634819142019143	0.145204222025048	0.508278212537777
Merged-chr13-37803388-4	chr13	37802889	37803889	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-22649.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.69516018660107	4.54611444983732	4.52367423071509	4.85072940034973	5.06032439720735	4.87534024165376	0.788713622029984	0.049524949762693	0.282949191146262
Merged-chr7-24463319-2	chr7	24462819	24463819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 1 of 6)	MIR|SINE|MIR	836.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	5.56818495494332	5.54893201402371	6.08192152161646	5.45394348275118	4.8885035592618	5.49484115638606	-0.855662973655712	0.0310558201262949	0.213332178739267
Merged-chr1-64360691-4	chr1	64360204	64361204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172100.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.68939053526335	3.8588930008195	4.09854495162317	3.7111829326004	3.72635483621163	3.74016884408179	-0.512917557851048	0.341554812882513	0.730894271945484
Merged-chr7-126749014-3	chr7	126748480	126749480	+	910.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10646.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	5.39657836521606	5.82623625910431	5.62764860318778	5.79797983548091	5.55354097908131	6.12871482174997	0.37288221560714	0.294258872555964	0.690955307247903
Merged-chr9-110654805-2	chr9	110654305	110655305	+	658.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-644.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	5.33584907714323	5.13696892336376	5.49656736245736	5.73542194230075	5.61018019146547	5.79366852044789	0.741679659855255	0.0274585284387208	0.197507713894285
Merged-chr12-87407677-4	chr12	87407148	87408148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19293.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	7.25536905994343	7.15833184955535	7.38119373316968	7.51469961000079	7.63501953080955	7.35108851667176	0.369695566558684	0.118903187162245	0.460965214433959
Merged-chr5-105651474-6	chr5	105651036	105652036	+	794.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48433.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.19655546209797	6.07346789103927	5.9734468153955	4.93975422968073	4.9567788195948	4.88412912994112	-2.23591913150774	9.43655221502921e-11	1.26644618823895e-08
Merged-chr19-10854735-2	chr19	10854235	10855235	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 4 of 7)	intron (NM_023044, intron 4 of 7)	12191.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	2.18968848113519	2.22865129390252	2.46878113710155	2.23682879811059	2.02108908096355	2.35608006139255	-0.616173185022845	0.498810594354653	1
Merged-chr11-3162107-3	chr11	3161626	3162626	+	978.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	31337.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.06599127111634	6.65885915709011	6.7319024110235	4.98355239003458	4.8340167621796	6.93869318824026	-0.769212624019805	0.517939646066644	0.844851543194866
Merged-chr17-24351608-2	chr17	24351110	24352110	+	1000.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-413.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	5.12678039076588	4.92212299284374	4.84561753093473	5.7521637989159	5.81666387132135	5.35731421947549	1.36437598688778	0.000222716254657833	0.00546015737111638
Merged-chr11-97416056-3	chr11	97415555	97416555	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34105.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	5.64569804856355	5.50374414182354	5.49920820272101	5.34482520295464	4.95305424598183	5.22381159999479	-0.7463175360478	0.0351895580846806	0.230192826187901
Merged-chr4-120879663-4	chr4	120879140	120880140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	MIR3|SINE|MIR	24841.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	6.15412061197021	6.2516660107464	5.83004100258668	5.68814142370419	5.97824244143594	5.94197096043904	-0.389276198133086	0.217116213101029	0.610826543809522
Merged-chr2-104742776-4	chr2	104742237	104743237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	64.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	6.34857333613994	6.22778849380103	6.13150325045568	6.14542329452743	5.64085083042247	5.69769060272905	-0.677302319354239	0.0347263188969101	0.228482816614652
Merged-chr3-105757568-2	chr3	105757071	105758071	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	43810.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.05684440507931	3.77505357658269	3.72208749573186	4.27954249464271	3.99057121489681	3.90459319901616	0.611701464606039	0.250744258848249	0.648153521953385
Merged-chr1-36869808-4	chr1	36869308	36870308	+	797.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	69719.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.54991120073621	3.35934140306547	3.48053594789863	3.3507824205112	3.23922572523109	3.4975533337595	-0.405655011454266	0.498613063937258	0.833992089521886
Merged-chr3-132029264-4	chr3	132028780	132029780	+	889.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.85776281044777	3.9091656776432	4.00222446777707	3.53680704058662	3.69614694300887	3.72877932015917	-0.867947031959643	0.104792402586099	0.431983644181703
Merged-chr8-117283591-2	chr8	117283091	117284091	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	26572.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.96316066740109	3.63351006589776	3.90504761528121	3.57107518455769	3.66755339941429	3.92611746482826	-0.377737047016638	0.495535082480177	0.832508543510954
Merged-chr19-7558493-2	chr19	7557993	7558993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	ID_B1|SINE|B4	1008.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	6.03205743651388	6.2845974805979	6.3993410382514	6.78815495926176	6.78809131225629	6.53187943025388	0.766989145207656	0.00623157710494507	0.0717174367563304
Merged-chr2-15055141-4	chr2	15054631	15055631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	-231.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	8.0782140785017	8.23487091557162	7.58760021638136	8.02802670502829	8.23390793925606	7.64421582460467	-0.00594844128435287	0.983211933684399	0.996242007327823
Merged-chr5-114942221-4	chr5	114941722	114942722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028211)	promoter-TSS (NM_028211)	20.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	5.86300963133172	5.93472034212787	5.73277261072129	5.97098740873589	6.08509750412864	5.68445919635699	0.150567186217005	0.631876393079364	0.895324662011483
Merged-chr15-58140968-1	chr15	58140468	58141468	+	1000.0	f0_balb.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	-398.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	6.25311940875509	6.22959421584366	6.18672492605057	6.33686920160914	6.1161019794546	6.09473391019129	-0.0619257248966272	0.826274258225202	0.959130347937145
Merged-chr5-18000326-4	chr5	17999819	18000819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37749.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.97780182860215	7.4431871626239	6.74780272630865	6.85754887074334	7.14496879798504	7.05690476572026	-0.111923673993066	0.702824553257132	0.922000148631826
Merged-chr8-120113583-1	chr8	120113083	120114083	+	1000.0	f0_balb.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-569.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	8.66753902677078	8.75131613151339	8.22446119302298	8.6367131805207	8.96338097171764	8.23877693172253	0.112336690806244	0.68463213054379	0.915930759709583
Merged-chr17-29488085-2	chr17	29487585	29488585	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.13284010127921	5.87934444384208	5.70562794158441	5.26443189676277	5.04193754313357	5.0302807323721	-1.54526373223808	9.9628308599001e-06	0.000399127217231857
Merged-chr14-66200001-4	chr14	66199507	66200507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	13817.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.4172812110836	3.38023229013086	3.39396105243518	3.57956137247584	3.04451093467017	3.40987411495905	-0.137707185673558	0.831060459943536	0.96040466966768
Merged-chr17-17587901-4	chr17	17587399	17588399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36590.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.67780176808323	6.87278158116542	6.73944073459004	6.88153537194625	7.15090112396686	6.76647271927394	0.287405666514376	0.276685559289031	0.674041208769616
Merged-chr2-157513823-4	chr2	157513345	157514345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46233.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	5.52367670639565	5.71798784406203	5.6572042514246	5.55226218978584	5.44662134181989	5.19988382272106	-0.41376946704297	0.221030825283601	0.61561513090473
Merged-chr12-12318260-3	chr12	12317776	12318776	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	56137.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.44870630247461	3.46623896797293	3.54154821340291	3.632679040613	3.4773628224684	3.38871272634805	0.0826156419569376	0.886269628646924	0.973745715955602
Merged-chr11-80200593-2	chr11	80200093	80201093	+	944.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028019)	TTS (NM_028019)	-8462.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	2.58893005779792	2.77438535451073	2.37555590066681	2.62856773702595	2.41256383601535	2.83822513281001	0.250007087549323	0.771628196485457	1
Merged-chr7-122298756-4	chr7	122298259	122299259	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	MIRb|SINE|MIR	9634.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.04864667318486	4.73427322540423	4.32381013083591	4.80076865252155	4.58381375449487	4.53816202444785	-0.232726425361374	0.614594598484207	0.887509542539593
Merged-chr8-121650650-2	chr8	121650150	121651150	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	1283.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	3.22930719921085	3.27766536903607	3.3883795360859	3.33054251950836	3.03146546477995	3.11644809277437	-0.554036053170521	0.388842391125108	0.768757717733778
Merged-chr11-3159532-2	chr11	3159033	3160033	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33930.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.46451073940248	7.01990882173437	7.13496416416015	4.53520696828772	4.18609316033093	7.37019574040628	-0.923070968420491	0.693128712460818	0.918830576287622
Merged-chr2-155097027-2	chr2	155096527	155097527	+	766.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040634)	TTS (NR_040634)	3052.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	4.29150852208662	3.9508356664519	4.38113051281978	4.49976451927679	4.30194725541255	4.5691152586077	0.638684368848397	0.178627670219996	0.559936447278822
Merged-chr13-23584481-4	chr13	23583963	23584963	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178194, exon 2 of 2)	3' UTR (NM_178194, exon 2 of 2)	1507.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	6.27860570482708	6.50575707563497	6.57453185250792	6.40832158972496	6.56777374137641	6.49652802990336	0.0666429521227525	0.80692178757265	0.954399610026228
Merged-chr6-142752200-4	chr6	142751700	142752700	+	742.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4486.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	5.13615088375323	5.25817981419445	5.36735765977537	5.16831620737668	5.04871353217758	5.34181364479232	-0.143456417708617	0.689543019836175	0.917397716197234
Merged-chr10-80702100-4	chr10	80701587	80702587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-267.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	6.33811013954365	6.21360918701046	6.37272418201725	6.29994698638602	6.21913982247749	6.4678913928099	0.0308450073785244	0.911436862824172	0.980098870307889
Merged-chr8-83594596-4	chr8	83594079	83595079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-88.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	6.67713850481705	7.03386262442188	6.7870253107741	7.28021913017276	7.61600349141175	7.20542897528756	0.817058720184835	0.00235571166475999	0.0349962607036866
Merged-chr8-83077570-1	chr8	83077070	83078070	+	733.333313	f0_balb.idr	intron (NM_177378, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	-87782.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.87510490940007	3.46403578869478	3.83201931966222	3.27194694362612	3.11844832366491	3.3842370066633	-1.85790829675143	0.00349578237612469	0.0471208585699956
Merged-chr6-72511595-2	chr6	72511095	72512095	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32796.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	3.72184319908713	3.91992226646139	3.58797325413524	3.74445097341146	3.59452848804213	3.60361654443408	-0.365104677954636	0.511225531293708	0.841331921585713
Merged-chr19-8715000-6	chr19	8714490	8715490	+	956.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-1093.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	5.16172019389253	5.42953738221785	5.7493376331955	5.26333302673633	5.14693886820767	5.71606143017009	-0.140423017971297	0.72018919409234	0.928071578828455
Merged-chr11-107469122-4	chr11	107468683	107469683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	CpG	1537.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	8.26935964225701	8.35858450457179	8.06626569396748	8.11939214496718	8.49706234554139	8.01774620177885	-0.00646132482206054	0.978761462579195	0.995160277495735
Merged-chr5-136244944-4	chr5	136244450	136245450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-10.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	7.1247973868051	7.1870912870668	7.22170888068151	7.30522946377592	7.33001121436207	6.89155534109912	0.0371977241298148	0.883769763987118	0.973446302281334
Merged-chr7-80901278-4	chr7	80900769	80901769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027976)	promoter-TSS (NR_027976)	0.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	5.5194604991616	5.71622550818967	5.50506626166436	5.4092296614816	5.3538052970545	5.70189194361001	-0.19755916262154	0.559261200487232	0.864901733108576
Merged-chr3-116166454-4	chr3	116165879	116166879	+	874.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER104|DNA|TcMar-Tc2	-36691.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.22123301405285	6.89320211958953	5.78451876142899	6.04562037587162	6.34807568849238	6.08210705779973	-0.372575931191282	0.328967755944067	0.721094547855478
Merged-chr17-40869385-4	chr17	40868872	40869872	+	863.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67C|LTR|ERV1	11186.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	2.56452523711882	2.72839037884681	2.50605018658601	2.87798969743632	2.93181482048236	2.90606151476332	1.59641709809211	0.0417334657578347	0.255499399639095
Merged-chr4-134534502-4	chr4	134534026	134535026	+	974.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	CpG	570.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	6.4970940657709	6.53881400959868	6.3279303258019	6.59379427056672	6.70144209261731	6.8288107466494	0.386557653105957	0.145052707958754	0.508020276278812
Merged-chr11-8604947-4	chr11	8604430	8605430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	59605.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.13216828227585	7.05557542673506	6.64109978185586	6.48208522679321	6.82141683221353	6.44237409255324	-0.567825289891555	0.0509920979459229	0.287735690077604
Merged-chr11-120902151-2	chr11	120901651	120902651	+	823.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30721.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	4.73974120484008	4.65320021336324	4.77338974838718	4.38456128175236	4.06060539124848	4.20863119796415	-1.28442855282222	0.00412280216100747	0.053111955753694
Merged-chr2-48333005-6	chr2	48332468	48333468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-481141.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.73383614852146	4.82691034475858	4.52864076813713	4.70165118681858	4.977093522726	4.80233317440001	0.292034378226399	0.476611636942866	0.822673606567109
Merged-chr4-150497011-2	chr4	150496511	150497511	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	155163.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.70760679760422	3.37164431448996	3.55117215665621	3.49830884624042	3.44343044882153	3.45715133305642	-0.311205468932903	0.595085314173771	0.879312736570733
Merged-chr7-142459209-2	chr7	142458709	142459709	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1603.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	2.14959910966831	2.1211378966597	2.02427275554864	2.2409988670383	2.22904924372731	2.42703649183135	1.43825540744151	0.117388996489104	1
Merged-chr13-60707515-4	chr13	60707009	60708009	+	851.291626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	78855.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.9040181898431	5.80819385898605	5.55946450441918	4.87953652509729	5.10075018346702	5.29109035788358	-1.32185208126728	0.000203256053073323	0.0050818899231145
Merged-chr3-116662371-1	chr3	116661871	116662871	+	1000.0	f0_c57.idr	intron (NM_008246, intron 1 of 11)	CpG	306.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	7.95561304322928	7.93970443444577	7.78982918934875	7.82740796927958	7.69811185080095	7.61039913555464	-0.262926872647863	0.232599066973576	0.628910871668854
Merged-chr1-86492461-3	chr1	86491968	86492968	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34089.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.99746349817054	5.2939416676422	5.33588062839021	5.56418505730992	5.25414622622579	5.17388900934748	0.268204794535831	0.469195857858695	0.818913936718213
Merged-chr7-19821991-3	chr7	19821453	19822453	+	816.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	802.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	6.05167155091797	6.17052928266603	6.39729128486017	6.77793350459166	6.78245340338352	6.61512468734017	0.855913495886247	0.00176657791760384	0.0280789714169972
Merged-chr10-22730977-2	chr10	22730477	22731477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011603, intron 1 of 6)	CpG	470.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	6.69813319473278	7.10805317509404	7.11368453387716	6.92845325487824	6.65738106448421	6.93991276139329	-0.219105568054212	0.424978876852734	0.792848465017231
Merged-chr16-94289844-2	chr16	94289344	94290344	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	447.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	2.82918590428251	2.81467963466071	3.20171103782031	2.79433719497504	2.67181462246403	2.88171971694291	-0.861843456376746	0.242932139666375	0.640179974985752
Merged-chr2-117343605-6	chr2	117343063	117344063	+	934.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	-686.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.94049401671999	6.53393013806573	6.00304596081784	7.16350968312308	7.11189278087807	6.54007610224245	0.640521497681887	0.0727956647417213	0.35446990120723
Merged-chr1-165717255-1	chr1	165716755	165717755	+	768.5	f0_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	-9161.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	6.19546493183802	6.18523352178368	6.31335390980194	5.894170887747	5.58277057565214	5.91041024988716	-0.758027886470303	0.0122698009957088	0.116029730793379
Merged-chr11-106967785-2	chr11	106967285	106968285	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31740.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	3.99377574093731	4.21065416497715	4.18774227041997	4.30512421407824	3.85635754972975	4.11702131955237	-0.0900874487207839	0.858016313901742	0.966785186918462
Merged-chr8-83131847-4	chr8	83131308	83132308	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33544.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.81209707860426	6.01328638565481	5.83815016862482	5.69890605904905	5.66643183139254	5.96961301063178	-0.215743784117946	0.49076163371456	0.830181469396006
Merged-chr3-136326060-4	chr3	136325541	136326541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310749)	promoter-TSS (NM_001310749)	25.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	6.29889578508556	6.16736752972345	6.24791797924489	6.46056715089982	6.2600299824611	6.62891053584701	0.345566569004282	0.22206451615074	0.617008189797668
Merged-chr5-99974201-2	chr5	99973701	99974701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077266, intron 1 of 7)	intron (NM_001077266, intron 1 of 7)	4737.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	3.77144785745184	3.84299587121753	3.80625247535187	3.91678046210372	3.71295384301305	4.02008715910156	0.233040525082745	0.656088352304347	0.90455659495195
Merged-chr15-99583899-3	chr15	99583373	99584373	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009699, exon 4 of 4)	exon (NM_009699, exon 4 of 4)	4817.0	NM_009699	11827.0	Mm.20206	NM_009699	ENSMUSG00000023013	Aqp2	AQP-CD|WCH-CD|cph|jpk	aquaporin 2	protein-coding	2.72033943314453	2.4530859568131	2.8497486026564	2.50330769610504	2.38077242768191	2.49501031212119	-1.32210924259203	0.108774310967976	1
Merged-chr19-5801954-5	chr19	5801424	5802424	+	848.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	748.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.71371657015547	7.93371711355973	7.5173121672914	7.91695230131937	8.15024044099	7.67361484117912	0.281301218788307	0.268690581563938	0.665928153896649
Merged-chr12-79011186-2	chr12	79010687	79011687	+	671.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3910.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	3.07125510142254	2.78937462086876	3.01862519290516	2.81502317030027	2.44696845854675	2.85424682733496	-1.29121395563759	0.113121162411019	0.449362970586178
Merged-chr18-53253942-2	chr18	53253442	53254442	+	969.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8280.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.50141653111442	7.51797127666661	7.38047225239622	7.22200908826897	7.47532821948666	7.00171509640249	-0.311202121097894	0.217281025457223	0.610996579127954
Merged-chr11-72429594-4	chr11	72429081	72430081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR55|LTR|ERVL?	-5945.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	3.98531416172797	3.47074412880582	4.0670788951872	4.00354313688662	4.05620704916768	3.6788647920069	0.192479791955865	0.742970344516462	0.935417543785804
Merged-chr4-115000673-4	chr4	115000171	115001171	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304551, intron 1 of 15)	intron (NM_001304551, intron 1 of 15)	553.0	NM_001304555	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	5.03528708097006	5.09860901334409	4.96355216162344	5.52263037208242	5.47842786030295	5.17614209303231	0.753066538998984	0.0364023731081793	0.234719576281034
Merged-chr10-68249510-4	chr10	68249024	68250024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29202.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.49315910984662	7.34044374672548	6.91702673675543	7.22892313939884	7.44378395883478	7.00498176887597	-0.0524659319748854	0.851536050433312	0.965295382747814
Merged-chr19-7340153-2	chr19	7339653	7340653	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	1707.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	3.67202669637764	3.99903697567903	4.18312274792781	3.86310098361697	3.74468767436231	3.72871102021076	-0.566064064665619	0.299227475593099	0.695964214930834
Merged-chr11-50239301-4	chr11	50238758	50239758	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-726.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	6.02829870909183	6.26019567627079	6.12821630606022	6.32663464897889	6.37707717060056	6.4627306208174	0.403455920557382	0.148451254826915	0.513997606860986
Merged-chr1-131339916-3	chr1	131339405	131340405	+	987.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 10 of 22)	intron (NM_001081011, intron 10 of 22)	-60342.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.74814311037336	3.72196162402475	4.22335117093304	3.63180986536983	3.18086192971818	3.65680636866702	-1.39255938751139	0.0274855679339081	0.197668032553554
Merged-chr10-53377209-4	chr10	53376708	53377708	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	2643.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	4.43624841799174	4.24557297820611	4.49489310147627	4.46729085410391	4.7527605881569	4.64231489978274	0.596231129224135	0.170624814726308	0.548139051918713
Merged-chr10-121379054-2	chr10	121378554	121379554	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 6 of 13)	intron (NM_029364, intron 6 of 13)	13964.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.968895193427	2.76955451423364	3.05799451426379	2.81113090821281	2.80244437281469	2.89724150630452	-0.483924574666747	0.494667652720806	0.832098209532918
Merged-chr6-85029118-4	chr6	85028626	85029626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	40387.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	6.45693498149789	6.41192144190446	6.00906247104918	6.3486538046415	6.20715187017959	5.77954131913437	-0.288439106657199	0.375375984708634	0.758646622209238
Merged-chr16-37868869-3	chr16	37868345	37869345	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177093, exon 1 of 4)	exon (NM_177093, exon 1 of 4)	445.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	8.53753820170573	8.66131685799373	8.44842601312054	8.68338982463853	8.39612133181467	8.48714331930447	-0.0380490186626036	0.858587869275425	0.966933063363181
Merged-chr9-120001358-2	chr9	120000822	120001822	+	775.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-16580.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	4.6987642533078	4.57058544405599	4.32532581589891	4.63620859256232	4.44047595118176	4.4400530006301	-0.102210039147929	0.816188049809195	0.956616423430214
Merged-chr9-124037933-4	chr9	124037459	124038459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26B_MM|LTR|ERVK	15988.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.85407076779534	6.81943059912429	6.7591057598089	6.82233326981532	6.86648068926981	7.02983801157224	0.139244553844219	0.574165733586351	0.870523174873875
Merged-chr7-69971641-4	chr7	69971148	69972148	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	366174.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	3.4839583428712	4.07711250948337	3.87634343735191	4.17388571702816	3.8288225066298	3.78979392903479	0.318769856785813	0.583517144223027	0.874062789752135
Merged-chr13-37997836-3	chr13	37997238	37998238	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3530.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	4.77856722638151	4.7115026631152	5.11041312364902	4.4657872669162	4.40973194168385	4.81246567807865	-0.718211830870536	0.0977597589419992	0.416977343758759
Merged-chr10-20060789-3	chr10	20060291	20061291	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-88129.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.42318908218273	3.88471485164809	3.643945442691	3.60792541071216	3.27101041819639	3.82712993379122	-1.43694693136547	0.0252060032879593	0.187948835594121
Merged-chr10-14035042-4	chr10	14034545	14035545	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	MER20|DNA|hAT-Charlie	68666.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.1084139437521	5.281206895774	5.04830006132423	5.49651713795677	5.44789943269599	5.38215622350789	0.57247393793031	0.0994838413234367	0.420601161975536
Merged-chr9-85748905-4	chr9	85748414	85749414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 1 of 27)	CpG	420.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	8.22850490342999	8.26071318127614	8.00588669008977	8.29954818400288	8.25438274184362	8.24226322396817	0.12726396626338	0.546894344713055	0.859122198966997
Merged-chr11-111101932-4	chr11	111101474	111102474	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	35810.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.27181228197289	4.37126694941058	4.15358769128734	4.28723671598254	4.32319411414546	4.17420393553836	-0.0183803298473015	0.968088630650086	0.992673830751364
Merged-chr7-132366679-2	chr7	132366179	132367179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-49451.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	2.50472955403216	2.26888097798485	2.25459269972391	2.3957037961409	2.26420766337768	2.58942857902244	0.433107906144615	0.616278920022033	1
Merged-chr2-163616403-2	chr2	163615903	163616903	+	592.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131225, exon 4 of 4)	non-coding (NR_131225, exon 4 of 4)	9191.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	3.16089436812078	3.67905743062471	3.63555992004104	3.38951208091988	2.99750484790388	3.60548120243997	-0.585705835554611	0.400586551593089	0.776861179903924
Merged-chr11-116409223-2	chr11	116408723	116409723	+	871.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	L1M4|LINE|L1	3809.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	4.19156212213738	4.06693466678049	4.16503335300849	4.61389575825931	4.72411507978045	4.37742330706343	1.17428045005734	0.00961992445140898	0.0978790258929859
Merged-chr8-107588482-4	chr8	107587967	107588967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	15.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	7.41446766911547	7.9876388063651	7.35845126169914	7.56874440447562	7.59476948528658	7.5021356006421	-0.104732227143623	0.699841493070769	0.920753377048759
Merged-chr1-105994865-2	chr1	105994365	105995365	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	4459.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	4.67824462159133	4.71562094416107	4.43712491350043	4.946614061261	4.83142034733688	4.55258483168056	0.393945408732853	0.352608695842887	0.740194084833795
Merged-chr15-84324701-4	chr15	84324163	84325163	+	865.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022321)	promoter-TSS (NM_022321)	-57.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	5.8286883610999	6.13543549916198	5.53950417267212	6.46301751984342	6.43640403334095	5.81477313010647	0.699178780451277	0.051224796622578	0.288481413020065
Merged-chr1-79762495-2	chr1	79761951	79762951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	-682.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	6.21084879469711	6.23141144358695	6.30240610447536	7.83928440549984	7.99344835457759	7.23215962645942	2.27525411865285	4.0878901249655e-15	1.13381720506043e-12
Merged-chr13-92930333-1	chr13	92929833	92930833	+	696.333313	f0_c57.idr	Intergenic	Intergenic	85546.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	2.47001694256089	2.47641491001623	2.47922605362952	2.75024413326251	2.69157655688893	2.98402892132741	1.94017633331682	0.0157881436607532	0.137675524808631
Merged-chr16-91548158-4	chr16	91547659	91548659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	1065.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	7.69014788641655	7.78817125121826	7.53733785278653	8.04919191234455	8.47529168814656	7.92035355658314	0.710245538572199	0.00505220218124603	0.0616322751786639
Merged-chr4-120882981-2	chr4	120882481	120883481	+	882.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	28182.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	4.96894302107912	4.85040137215492	5.39522950646016	5.11394306976552	4.90604664231567	5.45707280955897	0.180211057661319	0.66292214545068	0.90692994613967
Merged-chr17-51041043-3	chr17	51040550	51041550	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	118328.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.07707921639595	3.18395356025615	2.87506472823805	3.19509061934595	3.15626786739498	3.138369003879	0.458757588740145	0.49672173914157	0.833276379458998
Merged-chr6-5255742-3	chr6	5255237	5256237	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	496.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	4.72329428555638	4.83199170547492	4.64428451011068	4.84206499381667	4.44490471917378	4.97081535490618	0.0452817051100453	0.915939865626983	0.981201223155309
Merged-chr17-64333033-3	chr17	64332510	64333510	+	598.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	5.99854756397263	6.54275805542014	6.08301082055166	6.09143028213773	6.3821060191172	5.87457721611629	-0.15717232126024	0.640003509768157	0.898261146003016
Merged-chr4-34883727-1	chr4	34883227	34884227	+	540.0	f0_balb.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	-779.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	5.69360373149715	5.62879305648651	5.17921511182901	5.53150865128986	5.15603566434836	5.20947404167878	-0.429740557008724	0.249222199609364	0.646143532974884
Merged-chr17-40882200-3	chr17	40881674	40882674	+	826.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1616.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	2.73293744342772	2.9116023256106	3.10025167463237	3.37514861599482	3.69229987671348	3.56843781921872	2.98890806585014	8.38830079264478e-05	0.00244668994036172
Merged-chr7-35098460-1	chr7	35097960	35098960	+	601.0	f1_balb.idr	Intergenic	L1MB2|LINE|L1	-20833.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.76751553437239	4.16108452362424	4.37485167696825	3.93467004902804	3.67465529675408	3.91567046181482	-0.830603945295882	0.129059402777778	0.480460596229849
Merged-chr19-41999217-3	chr19	41998558	41999558	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	17295.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	5.54789879241799	5.54773990131928	5.68717582006372	5.5114091432743	5.56948278201113	5.89287896423237	0.125328552985227	0.70381150438309	0.922262518413016
Merged-chr12-95749307-3	chr12	95748813	95749813	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	57087.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	4.31401132122613	4.63142815511188	4.61611732520181	4.83330105362089	4.3330788597862	4.68229408637716	0.244384302413252	0.591369719623434	0.877578278083621
Merged-chr16-92853779-3	chr16	92853270	92854270	+	846.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27696.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.35184586709739	3.61028350758198	3.74279480510451	3.19199548965699	3.52097651494063	3.21847340086161	-0.919004431004875	0.156169018295619	0.526455928142522
Merged-chr3-37313624-4	chr3	37313137	37314137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001255992, intron 1 of 1)	L2|LINE|L2	1083.0	NM_001008502	241950.0	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	4.81776340385401	5.22784131816562	5.05407249709799	4.68642344482356	4.95012954856171	5.21403296642449	-0.182272132115882	0.656496559263891	0.904654860421566
Merged-chr12-119399223-2	chr12	119398724	119399724	+	812.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44186.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	3.39627930767488	3.45156060119497	3.63287279221785	3.70452200173141	3.5929466006413	3.48750059480954	0.394656320970553	0.490672998541747	0.830143152867115
Merged-chr11-94549128-4	chr11	94548643	94549643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	64.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	6.93678410804804	6.88286532210991	6.58311413810783	7.00864060584563	7.03880320336705	6.55065456165583	0.119755586449261	0.672717689943399	0.910949422492829
Merged-chr2-117386703-4	chr2	117386178	117387178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43801.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.67372505471941	5.31236709905609	5.80974524904671	5.21150791675329	5.16199091646103	5.49200508638801	-0.620940795692665	0.0877636846822842	0.393049429096834
Merged-chr19-36375459-6	chr19	36374940	36375940	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3627.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	4.45410202702745	4.27379823990888	4.20960148646747	4.43583622265369	4.31616997502452	3.96987293365313	-0.150841258960294	0.755776805900803	0.939419158965935
Merged-chr7-28377542-4	chr7	28377020	28378020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011756, exon 2 of 2)	3' UTR (NM_011756, exon 2 of 2)	1708.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	8.15814257724109	7.94833707857328	7.92086720786819	8.10318995042873	8.27384397085541	8.41896651377	0.358676798941982	0.109662953349086	0.442584999839782
Merged-chr5-148483457-4	chr5	148482959	148483959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68214.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.86121714654211	5.60473530400806	5.66041477006099	5.86225375401276	5.65022736519895	5.74924942490334	0.0681275544099791	0.830182793193962	0.960219727001139
Merged-chr2-34907865-2	chr2	34907365	34908365	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 3 of 14)	intron (NM_028716, intron 3 of 14)	6111.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	4.84281604323928	4.77291881803436	5.00417373670001	4.54727781651005	4.70651983537954	4.58316776975469	-0.579121450331979	0.153356957679115	0.522260798958866
Merged-chr3-90669101-4	chr3	90668618	90669618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013650)	promoter-TSS (NM_013650)	47.0	NM_013650	20201.0	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	4.48540043986758	4.79997376689824	4.95595954020908	4.12778617974727	3.89767383077638	4.43981051908972	-1.54355261075198	0.00165257321775483	0.0266768569542263
Merged-chr10-57570466-4	chr10	57570008	57571008	+	952.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-37979.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	3.98685545450264	3.84679842215595	3.69613648688782	3.51564850166309	3.52813714873333	3.60363593954996	-1.05127932242819	0.0575425758353551	0.309662569532287
Merged-chr9-65361160-4	chr9	65360635	65361635	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	75.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	7.63990096180882	7.5133862353783	7.45584744856148	7.23806443391418	7.47129273861571	7.20780899129564	-0.327296169985488	0.167086315094375	0.542760172575035
Merged-chr2-167419990-2	chr2	167419490	167420490	+	685.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1720.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	4.16056237609056	3.9482951956055	4.14640322497042	4.25249249132564	3.98224821584017	4.21440672017161	0.180567061747857	0.710972264652633	0.924511716032697
Merged-chr11-100713905-4	chr11	100713437	100714437	+	863.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029307)	promoter-TSS (NM_029307)	87.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	5.02244721509506	5.33435802480582	5.62791971874093	5.50085505087665	5.46481566832804	5.50265802120366	0.289955197100518	0.425307849659663	0.793032706839624
Merged-chr3-63929337-4	chr3	63928804	63929804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357824)	promoter-TSS (NM_001357824)	168.0	NM_177856	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	6.53561038614334	6.55137481778045	6.30513079822538	6.52593920133845	6.29803327490112	6.36527095932063	-0.127762855718611	0.642457105914633	0.899398873915991
Merged-chr4-89310646-2	chr4	89310146	89311146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007670, intron 1 of 1)	CpG	386.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	5.17885624104685	5.00629057443553	4.67294045904174	4.43932614488867	4.51775507254619	4.52405091974981	-1.13078408562449	0.00750827745157592	0.0822470708518601
Merged-chr7-27168726-2	chr7	27168226	27169226	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029391, exon 8 of 8)	3' UTR (NM_029391, exon 8 of 8)	-1924.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	3.74964422540933	3.54325537594158	3.78401824672495	3.71682537836012	3.73147926870296	4.37113665728285	0.856478712016415	0.140624899497541	0.501032655536156
Merged-chr13-9098423-4	chr13	9097911	9098911	+	874.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	4530.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.46369159322521	5.08999238729384	5.51495386925047	5.81174616158745	5.78243136079618	5.66078511821581	0.745039368732898	0.0288264507693674	0.203667429363804
Merged-chr1-134513830-6	chr1	134513300	134514300	+	947.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19140.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	2.81409381512088	2.54348501645592	2.65601658565582	2.9271986150211	2.78538271747071	2.85730905777567	0.937856980816001	0.212072520395616	0.604439552745312
Merged-chr4-59009902-3	chr4	59009392	59010392	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033165, intron 1 of 3)	PB1D7|SINE|Alu	6699.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	3.83903843223622	3.58040168955258	3.55957804285735	3.68418141436515	3.45558000534978	3.83804570665207	-0.0319931609002267	0.955633976535802	0.989763164889919
Merged-chr2-167349360-4	chr2	167348877	167349877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019835)	promoter-TSS (NM_019835)	-199.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.24430345956902	6.58792729492142	6.57924676283483	7.41208858238095	6.82287124827135	6.58382614483967	0.218823917270196	0.532786536666413	0.851971173271146
Merged-chr6-87914043-4	chr6	87913541	87914541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173737)	promoter-TSS (NM_173737)	65.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	7.40059562886098	7.52781318218757	7.10983036010986	7.04263718898054	6.97951342784627	6.933557003626	-0.569143553024494	0.022993276505464	0.177199643555307
Merged-chr1-128548897-3	chr1	128548363	128549363	+	849.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	43436.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.45099879365076	3.33498322517679	3.21582515692907	4.04904628934447	3.59083218918644	3.5961168999524	1.51038796279877	0.0154744673078203	0.135593879080572
Merged-chr14-26858490-4	chr14	26858010	26859010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36094.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	4.02341863094245	4.07248450996801	3.94910079682042	3.98338482786994	4.15831730273033	4.06796940201312	0.162835666150633	0.737994238108788	0.933858424870961
Merged-chr4-43498882-4	chr4	43498400	43499400	+	832.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013377, exon 6 of 12)	exon (NM_001013377, exon 6 of 12)	5535.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	5.11646021096797	4.84546973041773	5.43745106224154	5.32640422363763	5.38976909169452	5.35599559971905	0.439070806685675	0.244137237519236	0.641392609387897
Merged-chr10-52421834-2	chr10	52421334	52422334	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	4287.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	3.0395737967036	2.99238903668358	3.17453141430413	3.0247432175576	3.21269940063074	3.13185005975922	0.275068513608625	0.674479367632345	0.911852710156386
Merged-chr12-55836269-4	chr12	55835773	55836773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037756)	promoter-TSS (NM_001037756)	-93.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	5.85631685468545	6.22928308960091	6.16594584649712	5.72616142232985	6.25016380105883	5.887668180779	-0.183245533675951	0.580806851391634	0.873082871238033
Merged-chr2-128771917-2	chr2	128771448	128772448	+	630.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	intron (NM_008587, intron 9 of 18)	-46355.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.46928514442761	4.32182873395563	4.3990821906278	4.3362221958489	4.72181213583468	4.7092862680262	0.508837368887653	0.250330051592808	0.647642028882978
Merged-chr5-125274913-2	chr5	125274413	125275413	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	66181.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.61851817144853	3.88483004362564	4.45909817665885	4.22642316906806	4.17889911828068	4.22276938898307	-0.398348398975206	0.442084581893213	0.803076081297089
Merged-chr1-124073761-2	chr1	124073261	124074261	+	619.5	f0_balb.idr|f0_c57.idr	Intergenic	B1_Mur1|SINE|Alu	-28202.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	5.65429009700664	5.58227341930847	5.83984985342234	5.74577176061955	5.7155680051583	6.17765603557844	0.352836938668964	0.287465124572017	0.684740639605593
Merged-chr2-34108917-3	chr2	34108435	34109435	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	4.69632285253193	4.70638803738057	4.717530362685	4.79804684870101	4.95386099557494	4.89716399584129	0.411927580775898	0.289839302259097	0.687523480881889
Merged-chr13-52628740-4	chr13	52628249	52629249	+	935.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	31867.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.6285420149058	3.53857814646724	3.84251732235922	3.4713635169478	3.65364081807212	3.66683242627719	-0.237723510709479	0.673548160113942	0.911518491577771
Merged-chr1-173409203-4	chr1	173408709	173409709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11395.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.7802937122694	3.72384965535793	3.63396626638724	3.31970782206351	3.44972621082688	3.36837441993158	-1.21784777127987	0.0371866519407148	0.237962542081288
Merged-chr4-129512275-7	chr4	129511772	129512772	+	997.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	5.818804603695	5.69279549942025	6.02497295555384	4.89221326015504	5.18010835302176	5.87394203809397	-0.883488084793978	0.0337129064119057	0.224463304358408
Merged-chr2-77304743-4	chr2	77304238	77305238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24146.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	4.71317482867323	4.63250667125414	4.63558968992582	4.57993972725498	4.50060929599219	4.53707116777808	-0.301473166750396	0.463027510930315	0.815604460584161
Merged-chr2-23023939-4	chr2	23023439	23024439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	16302.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.29901880219331	5.37793862254208	5.29974879756352	5.31018381582448	5.56114847594197	5.39465450038555	0.205859119226008	0.545097478036749	0.858019423019685
Merged-chr7-101066709-4	chr7	101066206	101067206	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42069.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	3.03104545501216	3.10638392206797	3.39703752778077	3.94168260617789	3.74697503520648	3.47133941243215	2.20530053934509	0.000781085587903518	0.0149101013018134
Merged-chr11-100770989-3	chr11	100770496	100771496	+	810.616638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031871)	promoter-TSS (NM_031871)	-39.0	NM_031871	80860.0	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	4.47966226576853	4.89037664957544	5.08565179613521	5.04414541202295	4.77655528609228	4.67838104271126	0.0223045854974189	0.95912631111998	0.990174309444982
Merged-chr2-122773035-3	chr2	122772524	122773524	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	1311.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	3.22229868053363	3.22023373691653	3.32890211792835	3.07344388370994	3.12650333714803	3.34536258149276	-0.311139632399596	0.623350066278582	0.891380356166716
Merged-chr11-78803941-7	chr11	78803437	78804437	+	991.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22658.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	5.56459806981717	4.97424143284931	5.18243271695121	4.85786491399884	4.84613883958182	4.85366252318292	-0.881576292699496	0.0276119369864655	0.198268385637713
Merged-chr16-11000040-4	chr16	10999547	11000547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6926.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	7.69231479480607	7.44848585537022	7.43283065583934	7.54166724692493	7.61948923953102	7.28710011399466	-0.0515616013354945	0.83165689750066	0.960478468368024
Merged-chr12-102296604-4	chr12	102296103	102297103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12962.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	6.07431762795058	6.19304619111763	5.90658140203897	5.67338591143709	5.48707617541156	5.33703769171708	-1.00474774324958	0.0018003067207655	0.0284899052151875
Merged-chr3-79864974-4	chr3	79864473	79865473	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20957.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	2.19428416526807	1.94441178157936	2.09961010219583	2.1781485140975	2.02177883624716	2.30701996646228	0.635211310292305	0.495455756337766	1
Merged-chr12-8922967-4	chr12	8922474	8923474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	1667.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	8.20042171429272	8.48891045100608	8.27494057445106	8.57940387536008	8.86851828223624	8.14130441719565	0.337956390399373	0.196891544570887	0.584754678471847
Merged-chr14-31394987-4	chr14	31394479	31395479	+	899.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	22698.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.55055274626867	6.00736491694008	6.53152906941651	6.19732686595524	6.00168576154742	6.43769929351722	-0.277778473835825	0.389650022523659	0.769279536350629
Merged-chr12-91847625-2	chr12	91847125	91848125	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	1532.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	2.88075877461063	3.12880420647135	3.09102992096683	3.08395958795923	3.14694133815215	3.04453856221356	0.257873100366027	0.699739623130068	0.920711195189708
Merged-chr5-134638630-2	chr5	134638130	134639130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	CpG	779.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	7.7138461379417	8.19661089241987	7.94940951402556	7.62710204701261	7.8942013461458	7.96077149625295	-0.194668833127056	0.435801687012452	0.799370838506028
Merged-chr9-32211277-1	chr9	32210777	32211777	+	588.0	f0_balb.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12972.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	2.851031349591	3.02208196701344	3.25211747401405	2.93675517585776	2.69717389669214	3.16196540308122	-0.493722019784438	0.502926696443053	0.836691193058519
Merged-chr6-128887540-4	chr6	128887029	128888029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289707)	promoter-TSS (NM_001289707)	-58.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	5.4602885153857	5.51222684907089	5.69675997062938	5.49254749413474	5.68656520893782	5.42302802788601	-0.00644551382237576	0.984535080271696	0.996656710293047
Merged-chr16-95716069-2	chr16	95715569	95716569	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 8 of 10)	exon (NM_011809, exon 8 of 10)	13662.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	2.33704249574365	2.53495543494511	2.76231493907854	2.61852966339917	2.39020966294695	2.89251872573174	0.513466408150784	0.544824543385905	0.857895653540487
Merged-chr17-74819861-4	chr17	74819508	74820508	+	905.9541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	RMER19C|LTR|ERVK	102258.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	4.52163178633931	4.85267863393929	4.45986130268226	4.71818298827104	4.81092812836318	4.57302018788671	0.183549192666859	0.669607183440292	0.909692012644768
Merged-chr17-8163531-3	chr17	8163024	8164024	+	977.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1994.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	4.69903832555263	4.34342043436087	4.76772301783829	4.34890246470113	4.43569828405469	4.83207901584658	-0.156300250715316	0.73355982366503	0.932153005448542
Merged-chr16-58453935-1	chr16	58453435	58454435	+	683.0	f0_balb.idr	intron (NM_001356484, intron 9 of 15)	ID_B1|SINE|B4	45400.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	4.16158367693557	4.13901584034472	4.01664406282412	3.4961021733961	3.38454455725035	3.62201369883484	-2.12846010702162	0.000155347302825671	0.00409028684435915
Merged-chr6-146192168-3	chr6	146191700	146192700	+	896.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 46 of 56)	intron (NM_019923, intron 46 of 56)	258078.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	1.91333022233399	1.91202666087753	2.10152189371903	1.71340062712708	1.60195859172142	1.77324160394732	-3.2653640734041	0.00996848435696039	1
Merged-chr13-55529395-2	chr13	55528895	55529895	+	888.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-857.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	3.05590625198317	3.23145637642168	3.23641460970673	2.9305054792742	2.7416681646299	3.02273249769645	-1.33269597360106	0.0581630451493114	0.311611014151304
Merged-chr4-116710002-2	chr4	116709502	116710502	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151452, intron 4 of 9)	intron (NR_151452, intron 4 of 9)	1407.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	2.10375936314554	2.17391787046233	2.31248892846891	2.14731707331404	2.00972594231401	2.12622601650527	-0.767397090762179	0.395132409369907	1
Merged-chr13-91509737-3	chr13	91509232	91510232	+	768.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48635.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.27303489383481	3.06507213210235	3.1074954740204	2.53595071376463	2.58457170147617	2.68485878420073	-3.37860095100654	0.000183398098702496	0.00466102290679208
Merged-chr7-109968004-4	chr7	109967507	109968507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7537.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	3.8642181164456	3.79046599993094	4.07952967047379	3.80565297173345	3.54185894040867	3.91855721181502	-0.496775937765753	0.361714959218467	0.747458707295016
Merged-chr11-119944807-4	chr11	119944282	119945282	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	1690.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	5.60423289117365	5.30182827515761	4.92412964539507	5.18619416446255	5.08155690241014	5.17611704955757	-0.351094585054748	0.367082428762545	0.752113401392775
Merged-chr8-33778772-4	chr8	33778289	33779289	+	857.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31019.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	2.33445827662738	2.19601126183457	2.17695969575298	2.3683423390666	2.16103109887963	2.51400459771162	0.743449415924334	0.399736959605674	1
Merged-chr3-146146309-2	chr3	146145809	146146809	+	615.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_026656	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	1.78576963008466	1.77422920487827	1.86668783335409	2.44843281948782	2.09530457570227	2.23305582627556	5.7923688154468	4.24583148468567e-05	1
Merged-chr10-6983043-4	chr10	6982555	6983555	+	911.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039652, intron 4 of 5)	intron (NM_001039652, intron 4 of 5)	-2590.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	3.54597355186949	3.99933252407744	4.00091539264639	3.48696032022649	3.51799852383983	3.78717266243069	-0.885662457312389	0.128118018767961	0.47875529283893
Merged-chr18-12224604-4	chr18	12224119	12225119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	11767.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	7.77985505027863	7.99720465266218	7.99126568755872	7.69852067758726	7.87105669591083	7.70997426147047	-0.228184674448266	0.3061014708967	0.702138971478224
Merged-chr16-97536004-4	chr16	97535519	97536519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-62.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	7.47997012682287	7.59725439046587	7.42620705756066	7.43763617788599	7.57654883347271	7.38610534734897	-0.0470281764947631	0.836840333273208	0.962001762335242
Merged-chr2-29405612-2	chr2	29405112	29406112	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	27098.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	3.49227789335708	3.94438339881197	3.60229668266515	3.38522190761832	3.51243854002985	3.92025285717145	-0.264107977095809	0.66740631524152	0.908729013673458
Merged-chr15-9070453-4	chr15	9069991	9070991	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-769.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	6.20102088366094	6.37860651036698	6.18202758826154	6.51101634888034	6.6676579329484	6.08312373955114	0.323082298804736	0.287481125660775	0.684740639605593
Merged-chr17-70751328-4	chr17	70750849	70751849	+	817.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	95428.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.71271460689153	5.83648145306383	5.80605766569893	5.97653393178204	6.06666927618556	6.14189132948846	0.483724552075907	0.101956594008325	0.425901295598742
Merged-chr7-64279727-4	chr7	64279201	64280201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-7969.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	6.19912320181729	5.96610834249062	5.64511261671717	5.72427106610074	5.81630356310276	5.52835419060573	-0.469394558332202	0.161813811607543	0.53495187080299
Merged-chr5-139481305-2	chr5	139480805	139481805	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133349, intron 3 of 6)	B1_Mur1|SINE|Alu	3186.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	2.9643718006539	2.58001306485782	2.81765953042276	2.68493031459698	2.43909044064945	2.89095908650081	-0.604782652499967	0.456579705795263	0.811723269017205
Merged-chr7-126948467-1	chr7	126947967	126948967	+	540.0	f1_balb.idr	exon (NM_001347657, exon 1 of 3)	exon (NM_001347657, exon 1 of 3)	692.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	1.97262189079897	1.9789032249671	2.18322710235222	1.962509208231	1.73002678403865	2.12938310829662	-0.765795385316307	0.463693182694623	1
Merged-chr11-82023525-2	chr11	82023025	82024025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-12052.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	6.67680055550028	6.41823694319577	6.10062113451303	6.28492749188275	6.49943318064599	6.47009476463513	-0.0157375345037141	0.958135838388617	0.990000537228272
Merged-chr15-85832282-4	chr15	85831778	85832778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033337)	promoter-TSS (NM_001033337)	-26.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	4.53845903283251	4.37269739070524	4.49824655465004	4.77526452815335	4.59401498641751	4.29109835809477	0.262485872583278	0.555247788586687	0.863191483122339
Merged-chr4-132303348-4	chr4	132302873	132303873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-17.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	5.89045482900781	5.84278130560377	6.01521196944697	6.0231533433269	5.74210378351107	5.70805360489609	-0.139272609770977	0.653237293194692	0.903270202473883
Merged-chr1-58773498-4	chr1	58772999	58773999	+	644.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21875.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	5.27593878484052	5.23965287615293	5.75837444905247	5.46136573793383	5.35020111686729	5.79510158666922	0.20548942716657	0.583119488815294	0.873907285988058
Merged-chr15-58616197-3	chr15	58615691	58616691	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200723.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.40725243868265	6.52862848368392	5.92630464314918	6.09979553111777	6.3631476865337	5.7699326478186	-0.348594292390994	0.308175818323431	0.70421809494016
Merged-chr1-106678396-4	chr1	106677872	106678872	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	L1MB3|LINE|L1	35918.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	3.28549074272971	3.66687275896882	3.45569531749662	3.51117513325191	3.63376058692434	3.58191241885921	0.340924773691995	0.565167034735309	0.866558904441948
Merged-chr14-103816796-4	chr14	103816302	103817302	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	26899.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.46297642291155	4.12867414587528	4.28582301190725	3.67924991543213	3.59227741459148	3.88555267624452	-1.82031437698242	0.000596426948978663	0.0120983650830367
Merged-chr2-6723822-4	chr2	6723329	6724329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-2167.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	6.58200103666564	6.43133103910966	6.0482248390663	5.98833437455894	6.1948594091069	6.17721046918714	-0.434004370451969	0.153622921964485	0.522554369357012
Merged-chr2-145906069-3	chr2	145905570	145906570	+	713.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026425, intron 1 of 5)	B2_Mm1t|SINE|B2	2829.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	2.54705697433681	2.54513472491464	2.54918832227674	2.6590289057821	2.61269138631553	2.92609232081714	1.04113207350712	0.17712753554705	1
Merged-chr4-45443831-2	chr4	45443312	45444312	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-35046.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	2.81336849841018	2.80536685304295	3.10249385114643	2.80120199000477	2.91620689415678	3.17326836518	0.281017145653048	0.695107117982137	0.919230570201314
Merged-chr10-80064129-2	chr10	80063629	80064629	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 16 of 31)	intron (NM_001359635, intron 16 of 31)	10110.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	2.70014861348141	2.62696175425004	3.13126661419952	3.03185405066955	2.67899397542808	2.85892756950535	0.144328165530085	0.85202335502356	0.96531854415899
Merged-chr7-44468678-2	chr7	44468178	44469178	+	650.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026690)	TTS (NM_026690)	698.0	NM_001205070	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	4.01323362504744	4.47189845850362	4.21801653848585	4.23023802009259	4.06537278715842	4.32967391394829	-0.129628196535733	0.79183386941667	0.94981786289531
Merged-chr3-95529550-2	chr3	95529050	95530050	+	670.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001267695, exon 2 of 8)	exon (NM_001267695, exon 2 of 8)	2764.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	5.88383888334458	5.93518488762873	5.73188027200543	5.50596597260026	5.99594265363362	6.22040340998254	0.138597099899566	0.687030120231056	0.916965854132552
Merged-chr11-105496846-4	chr11	105496328	105497328	+	898.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40093.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	3.88311207244763	3.76516814070165	3.94490932880194	3.74035647740587	4.09678002204727	3.96525100631135	0.265641237550789	0.61112257120726	0.885955239128401
Merged-chr10-96378780-2	chr10	96378280	96379280	+	546.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152573.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.60794146854785	5.63109127770413	5.78403066305098	5.40988365215009	5.66373837632789	5.64116965972044	-0.171690739477734	0.596286539221333	0.879909519357116
Merged-chr6-83124359-2	chr6	83123859	83124859	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023547, exon 3 of 5)	exon (NM_023547, exon 3 of 5)	670.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	3.35498911401652	3.480655721549	3.79075413296045	3.2874922454416	3.46458220855438	3.28706529021003	-0.720832173871981	0.246368963409745	0.643456125659878
Merged-chr2-128776645-4	chr2	128776106	128777106	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-41697.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.08610698041936	3.67069025110656	4.27181003443902	4.27605654357534	3.99210324913931	4.33862806669547	0.507155222077956	0.343000164150377	0.731856773485056
Merged-chr19-14669097-2	chr19	14668597	14669597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70914.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.75341927616209	3.41084095813448	3.67578260582267	4.11324503751817	3.64302899013681	3.85128442702472	0.854963913088628	0.13791353392063	0.496333880789271
Merged-chr11-20983661-2	chr11	20983161	20984161	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-107663.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	2.56056968949657	2.66684878861672	2.67880429571211	2.45503722559402	2.41616488082841	2.62928791058898	-0.816235087705814	0.30008052756979	1
Merged-chr9-20644053-3	chr9	20643550	20644550	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310746)	promoter-TSS (NM_001310746)	714.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	7.60059635741744	7.78748196876017	7.65208126002337	7.78627356133847	8.32196655913637	8.0560467697557	0.563545927068703	0.0224799737482356	0.174460954422052
Merged-chr11-118235159-4	chr11	118234716	118235716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13376.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.37284797449169	8.20496410721183	8.23302377947875	8.24200172587101	8.63818782116947	8.02205502754748	0.0877430222049431	0.724487340767867	0.929418317431141
Merged-chr19-8759288-2	chr19	8758788	8759788	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016813, intron 1 of 20)	intron (NM_016813, intron 1 of 20)	2171.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	4.34382834539942	4.28241736021741	4.67810282435458	4.45797654236952	4.45103384599067	5.04168700703586	0.565080264002133	0.234182543544828	0.63036877369004
Merged-chr6-72439128-4	chr6	72438625	72439625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046011, exon 1 of 1)	non-coding (NR_046011, exon 1 of 1)	433.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	7.8173739453793	7.92110859146431	7.52797255772448	7.54290165259568	7.92510811130253	7.8063474860616	-0.00321051698578903	0.989649167309313	0.997611022725407
Merged-chr18-82765406-4	chr18	82764892	82765892	+	959.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6353.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	4.50628389924003	4.61647234383877	4.0911504074974	4.18290935243496	4.13394826425977	3.94729345353096	-0.908218973366363	0.0682099507017175	0.341659453091987
Merged-chr9-21137072-2	chr9	21136572	21137572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-5797.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	6.00318254069219	6.02818775888645	6.0316431049972	6.25242510423967	6.54048628051791	6.34439314331218	0.622569925091403	0.0281549293200735	0.200626475881192
Merged-chr10-51481597-4	chr10	51481108	51482108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291893, exon 3 of 8)	exon (NM_001291893, exon 3 of 8)	996.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.97185925208184	8.17880196923238	7.9347201059104	7.43818528655559	7.83970882418443	7.5537085293375	-0.58248179438177	0.0157941314064733	0.137713306724283
Merged-chr4-130789017-2	chr4	130788517	130789517	+	795.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3520.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.21375726157113	5.60211160480328	6.66095509424352	6.55990504913859	6.13108750549997	6.6448493383699	0.384790201657502	0.313102306395227	0.707746598467115
Merged-chr11-87073446-3	chr11	87072915	87073915	+	898.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 1 of 9)	intron (NM_025638, intron 1 of 9)	722.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	4.56641540234005	4.65501587751916	4.80874154317612	4.71749468347736	4.1143517293856	4.29884084132617	-0.675986249245866	0.151386518256078	0.518761609877757
Merged-chr17-5569287-4	chr17	5568792	5569792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	76692.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.40079424239307	8.40837253337518	7.79831918017434	8.04273927307373	8.42714231633211	7.82775598368995	-0.152087167933365	0.591961497570685	0.877861524708363
Merged-chr5-16467879-2	chr5	16467390	16468390	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85605.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.38793680288779	6.46029618346387	6.07162317654841	6.52372565917187	6.79686018764784	6.46991663997759	0.459524350834804	0.113521770412137	0.450160309091308
Merged-chr8-126597171-2	chr8	126596671	126597671	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3735.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.49417312038612	5.15308754651804	5.11500292771501	5.39338467384986	4.91484220319624	4.87812643421678	-0.375868521733498	0.34922032087648	0.737211397896543
Merged-chr10-40302271-4	chr10	40301757	40302757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007444)	promoter-TSS (NM_007444)	-69.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	6.74552068866703	6.73384710602741	6.54920109682895	6.6995625952001	6.90013289135595	6.59085664214155	0.0955590102712044	0.717921779582729	0.927245055189366
Merged-chr15-31348631-2	chr15	31348131	31349131	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	19128.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	3.57820101896282	3.53086813614596	3.88517587855491	3.28399130523735	2.98676856702107	3.40993467716252	-1.72896513284391	0.00886423928369753	0.0926020869200131
Merged-chr15-59392180-3	chr15	59391619	59392619	+	983.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	17921.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.71299566617963	5.70266247582625	5.60925918737682	5.72337974066747	5.62396756224426	5.40183415335335	-0.150504035677378	0.641333263045675	0.8989154097126
Merged-chr13-60644799-4	chr13	60644291	60645291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	42580.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.98354042312674	5.8536923492094	5.89251198850006	5.06534561791525	5.18765763010689	5.39852252430192	-1.32126732316279	6.816035071456e-05	0.00204377890531788
Merged-chr11-50025030-4	chr11	50024541	50025541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290749)	promoter-TSS (NM_001290749)	-290.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	8.18025699497145	8.02382101054149	8.02229522283301	8.20388474893666	8.01822613810709	7.60651827018931	-0.148421766422292	0.550840214841543	0.86080292597632
Merged-chr6-136492390-4	chr6	136491897	136492897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26454.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.72106108706748	3.50693697514038	3.61469014294276	3.66846405016937	3.38421530269066	3.6322513605061	-0.195817197007948	0.732903730458152	0.931955706399565
Merged-chr17-81524765-3	chr17	81524285	81525285	+	838.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	213602.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.79559665449808	4.05984388254831	4.30765432698088	3.67126790448571	3.69391754597461	4.03563932389056	-0.801473769694551	0.144750366209066	0.507621952799257
Merged-chr19-41349840-2	chr19	41349340	41350340	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	35230.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.60381644145166	4.38826640885267	5.1155333380631	4.97320743188673	4.82648501049428	4.72996522507593	0.279011331942567	0.535156754647036	0.85341621121369
Merged-chr9-113781740-2	chr9	113781240	113782240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-11590.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.58651512100949	5.49995084741268	5.53062278662385	5.22587712614316	5.47080789844085	5.22244209529545	-0.419362830189573	0.21834943253428	0.612472797118277
Merged-chr1-184617606-2	chr1	184617106	184618106	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59915.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.32722976165138	7.10834795834205	7.13013024248227	6.71209947150162	6.95514815262515	7.07497382198316	-0.417524246802977	0.101573833664337	0.425159995550188
Merged-chr15-99457847-4	chr15	99457339	99458339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001884)	promoter-TSS (NM_001001884)	-91.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	5.6977528180671	5.72642173412618	5.90393013347106	5.58120935880247	5.75263423490907	5.98623277618517	0.00673442915389438	0.983246852513809	0.996249532451341
Merged-chr3-100922218-4	chr3	100921729	100922729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-264.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	7.387911625283	7.54309097134109	7.0976364293687	7.41903662377598	7.5353075446564	7.10152368586964	0.0138179489333915	0.958416902107612	0.990042875115707
Merged-chr13-20508291-2	chr13	20507786	20508786	+	704.583374	f0_balb.idr|f1_balb.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35296.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.05698960154464	3.16069756965088	3.00746454181135	2.72015107117261	2.6983694959463	2.70275526601451	-1.97054292284211	0.00870671757266215	0.0914733024982414
Merged-chr9-62235814-2	chr9	62235314	62236314	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8286.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	3.84174866969455	3.99782161509866	3.69240265141157	3.87775059682038	3.64205033880307	3.96805486372641	-0.08906677309648	0.869095833064799	0.969772902205443
Merged-chr7-99433058-3	chr7	99432555	99433555	+	773.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-32949.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.25092330195455	3.03204304941036	3.13031792235584	3.03628318419908	3.07215080542687	3.14409029334539	-0.256870421324422	0.693533602151708	0.918960880648635
Merged-chr1-128548418-3	chr1	128547898	128548898	+	967.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43901.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.89007429045451	2.74204659067573	2.81089598723128	3.46277266249519	3.06514238886392	3.25834610553666	2.15440759471822	0.00323776063282699	0.0446630614615829
Merged-chr5-134583704-2	chr5	134583204	134584204	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020022, intron 1 of 10)	PB1D9|SINE|Alu	1014.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	3.30006654308588	3.51757769439004	3.31744049524038	3.41345815765285	3.87323272790973	3.56278590977101	0.910949293798612	0.138575469265705	0.497458373815125
Merged-chr12-116049214-2	chr12	116048714	116049714	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	1490.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	2.49041380354556	2.67491393988014	2.71668887908341	2.68054347787375	2.51070738698839	2.60315628054906	-0.173230589715778	0.8222998144328	1
Merged-chr11-60538024-4	chr11	60537539	60538539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172943, exon 1 of 4)	5' UTR (NM_172943, exon 1 of 4)	356.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	8.98747820119284	9.18604337654135	8.77685420278722	8.65487338849526	8.91169982245219	8.69998666414906	-0.322236589276959	0.146962613438924	0.511501448907265
Merged-chr18-70476566-4	chr18	70476072	70477072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	3906.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.42813030407524	4.36156297780972	4.44277445463415	4.67019010507433	4.67203875393471	4.37573032718069	0.448292351069712	0.299790992256774	0.696496129658012
Merged-chr11-34054566-4	chr11	34054059	34055059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	7631.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.96868499816366	6.92055575214143	7.07269108660831	6.84944784632636	7.12625043401077	6.82595135863655	-0.0522549811857104	0.837111118151759	0.962036682446467
Merged-chr12-99390914-4	chr12	99390412	99391412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	59162.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	6.95891821353298	6.80059953415841	6.49787069352861	6.64838661774573	6.73902957639421	6.8968553276969	-0.0245827855668872	0.928440060327533	0.983802612059568
Merged-chr4-108318214-2	chr4	108317714	108318714	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9938.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	4.64424654303978	4.41904185096087	4.61496899407133	4.55952428406803	4.13075179264754	5.02595808003449	0.128224175370364	0.796530302711793	0.951430675491237
Merged-chr16-92413185-3	chr16	92412688	92413688	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-13110.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.13561026018056	5.94533774086912	6.18231386434763	5.79397376684922	5.78979311419914	6.2225076286219	-0.258055872700743	0.412654288756877	0.784551818322662
Merged-chr7-4203996-4	chr7	4203518	4204518	+	951.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33736.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.29760432525781	4.37880438498998	4.72971444099891	4.31367527094403	4.4506632667539	4.57100830053687	-0.0627785207195994	0.889863426014999	0.974313026039223
Merged-chr14-70931110-3	chr14	70930635	70931635	+	993.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	41028.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.57705014946535	3.43572221645481	3.80317889382255	3.47147248360306	3.31619057494185	3.52702700477943	-0.636625592694782	0.282385348402526	0.680354414809978
Merged-chr5-33658038-4	chr5	33657539	33658539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310541)	promoter-TSS (NM_001310541)	-62.0	NM_001356985	68366.0	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	7.36228600298383	7.34381239989959	7.34399186115055	7.44595048133726	7.63598640600114	7.45485814563061	0.249884036418695	0.270895506495504	0.668030149501448
Merged-chr1-91539927-2	chr1	91539434	91540434	+	929.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-631.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	4.53541025634348	4.35462018805786	4.43469775052821	4.24892038107879	4.15843841441446	4.3735989186046	-0.498538801184919	0.266629852256872	0.664166899200562
Merged-chr16-11001884-4	chr16	11001392	11002392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7006.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.48301815260487	7.45761504064134	7.30824507967839	7.374376038623	7.52667604971795	6.81575794366306	-0.197599205645319	0.480894764309491	0.824849859798069
Merged-chr7-27861064-4	chr7	27860539	27861539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024726, intron 1 of 4)	intron (NM_001024726, intron 1 of 4)	454.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	6.04094699442277	6.06997841425957	6.64060867513993	6.12897654138906	5.92799442218643	6.51370089706535	-0.112584024054511	0.744204509678751	0.935908101256887
Merged-chr4-141637737-3	chr4	141637273	141638273	+	964.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-13939.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.20713186351454	5.28958663136674	5.33842028777458	5.94163904375052	5.90713525536343	5.37060421527942	0.946878265652988	0.00720879714694989	0.0798282663033546
Merged-chr14-50944534-4	chr14	50944022	50945022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013632, exon 1 of 6)	5' UTR (NM_013632, exon 1 of 6)	219.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	6.61472969692958	6.64129583372706	6.61285186029868	6.75548395089627	6.59492533915498	6.67180372100475	0.0788288171468841	0.756597968880581	0.939652679558287
Merged-chr3-101595399-4	chr3	101594919	101595919	+	912.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	9288.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	5.80920733231101	5.49444652960138	5.65062208274034	5.52679102649618	5.62763087327589	5.83776903946364	0.00993774488917517	0.975959547364732	0.994572735300192
Merged-chr7-43637300-4	chr7	43636763	43637763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 2 of 5)	intron (NM_028236, intron 2 of 5)	2524.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	5.86668528737577	5.19461820593589	5.70718942575523	5.90126288621829	5.82314664048194	5.82008588688786	0.416388187725205	0.241363592775113	0.638385260200477
Merged-chr11-107338449-2	chr11	107337949	107338949	+	719.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	132271.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.9521742000812	4.67192874737071	5.23125500674313	4.65407166198274	4.77751603450135	4.67947870599674	-0.567730877982387	0.176052863530672	0.55621394496944
Merged-chr2-144007688-2	chr2	144007188	144008188	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	3575.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	4.6519467070771	4.5560204583543	4.60429235586528	4.59742668828481	4.33161658925251	5.34378282846512	0.504203802323442	0.310979315103666	0.706228303558147
Merged-chr11-69800789-2	chr11	69800289	69801289	+	650.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	intron (NM_010198, intron 1 of 5)	927.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	2.81017065507349	2.79329162682194	2.68458152644433	2.87510231056467	2.62555324860206	3.00244208807582	0.364480893411131	0.62488064702211	0.89225655223638
Merged-chr5-110269291-3	chr5	110268830	110269830	+	657.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028273, intron 1 of 5)	intron (NM_028273, intron 1 of 5)	569.0	NM_028273	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	5.29392545183441	5.55855655059354	5.51573232463659	5.47525552999491	5.17761201137593	5.34249596029655	-0.248447161482218	0.476234716333149	0.822450123983661
Merged-chr7-90442286-4	chr7	90441730	90442730	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	-551.0	NR_073436	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	7.03749709727518	6.77209586908548	6.44937684570566	7.05624617781126	7.41632297959218	6.54924633054962	0.435004956631644	0.190365516618529	0.576626643858556
Merged-chr8-61920594-4	chr8	61920075	61921075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7512.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	7.69895565479204	8.05398409644544	7.4902474234476	7.67554756729036	8.14341340562461	7.54715783768952	0.0691305171471328	0.808007694314999	0.954603212105103
Merged-chr16-20622533-4	chr16	20622021	20623021	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177940, intron 2 of 18)	intron (NM_177940, intron 2 of 18)	-1243.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	4.20337118341766	4.14435626970363	4.09924658547628	4.57487077333091	4.57349759800373	3.95536425569635	0.685453830685736	0.173711564684947	0.55292812026605
Merged-chr12-80938839-4	chr12	80938338	80939338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6561.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	7.55252886575283	7.86656698600584	7.46045635453434	7.85746786340827	8.20495871827186	7.70647779106265	0.435158177340273	0.0951884890990068	0.411148363215922
Merged-chr10-45020966-2	chr10	45020466	45021466	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-46248.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	4.62489068489928	4.44061283748893	4.67315778561819	4.63276799977366	4.6812548827179	4.53582111413375	0.109997989348344	0.792216889024793	0.949929758256028
Merged-chr2-60815031-4	chr2	60814538	60815538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	66400.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.4720287241896	5.51228551599335	5.14678476528185	5.44330448244558	5.47148305168473	5.3800078980602	0.068628182562718	0.842617866697589	0.963146698164766
Merged-chr2-145888166-4	chr2	145887667	145888667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028724)	TTS (NM_028724)	-15074.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	7.52668573123852	7.45457955397341	7.21231853541203	7.42321269577382	7.58099638291595	7.31768352006167	0.0584423582889253	0.808873240244361	0.954721853010197
Merged-chr11-97988177-4	chr11	97987683	97988683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1737.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	8.53561782062768	8.64495686777833	8.17950899420624	8.3896474059029	8.77852276790769	8.06791291240328	-0.0265844997866698	0.922220845777902	0.982542868764899
Merged-chr4-21727739-4	chr4	21727289	21728289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	88.0	NM_001290420	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	5.2075634600401	5.34576496568417	4.97542931138266	4.93988333125101	5.01565517155088	5.11218139562942	-0.366212016720198	0.325413399109781	0.718147594192999
Merged-chr9-108346942-2	chr9	108346442	108347442	+	797.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-889.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	6.45621155816048	6.36859913856639	6.42076140385129	6.68479113139972	6.92993350231867	7.11629484239465	0.793429129898078	0.00328303291192132	0.0450515352993535
Merged-chr15-27926651-4	chr15	27926155	27927155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	7.94981564237704	8.05934405117212	7.38394498367101	7.61533334541766	7.6902549278195	7.18034942794209	-0.456285432124304	0.11435933781821	0.451636423866224
Merged-chr17-34693297-3	chr17	34692821	34693821	+	863.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031176, intron 12 of 32)	intron (NM_031176, intron 12 of 32)	22786.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	2.58218728256389	2.76143441508721	2.89444570138925	2.86662687889704	2.40740079397207	2.5958371477485	-0.600549654344983	0.46364014713159	0.816038286358001
Merged-chr8-123250831-2	chr8	123250288	123251288	+	733.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310661, exon 4 of 15)	exon (NM_001310661, exon 4 of 15)	-3407.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	3.53434350621627	3.53172300654257	3.80126472129582	3.81780970452608	3.75609398646541	3.77076943950925	0.547176124371657	0.3151102376464	0.70945648744508
Merged-chr2-11713646-4	chr2	11713146	11714146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	RLTR17|LTR|ERVK	7934.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	3.81119067631102	3.43424711463636	3.78804914178728	3.62635897991847	3.58424537388266	3.85681128600889	0.00748655089210096	0.989548920328224	0.997611022725407
Merged-chr8-77341817-3	chr8	77341273	77342273	+	877.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 18 of 22)	intron (NM_030113, intron 18 of 22)	-175283.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.20808299429236	3.15130268908392	3.28258411391245	3.07437987141414	3.00849417275796	3.24317969934801	-0.462129473318572	0.472951715571093	0.820596917013982
Merged-chr2-144173976-1	chr2	144173476	144174476	+	619.0	f0_balb.idr	non-coding (NR_136884, exon 4 of 4)	non-coding (NR_136884, exon 4 of 4)	15314.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	2.78193491437457	2.67658706160813	2.62307850871375	2.72754235308076	2.65371612773125	2.8809764152066	0.290340594166208	0.695960307987984	1
Merged-chr8-45975866-4	chr8	45975374	45976374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033148)	promoter-TSS (NM_001033148)	346.0	NM_138668	192169.0	Mm.210882	NM_138668	ENSMUSG00000031634	Ufsp2	1810047C23Rik	UFM1-specific peptidase 2	protein-coding	7.92999195666187	8.35902631126664	7.88184376674639	8.10215093992401	8.45081571956949	7.99375495781915	0.172429729436525	0.508018798650088	0.839550861029232
Merged-chr11-69408746-4	chr11	69408252	69409252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001017426, exon 2 of 23)	5' UTR (NM_001017426, exon 2 of 23)	4923.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.60258228657839	8.44441901206287	8.05272472756916	8.63910636746595	8.93748291349849	8.1083354798698	0.307849324111291	0.286951002148082	0.684300670260737
Merged-chr16-21995465-4	chr16	21994977	21995977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083894)	promoter-TSS (NM_001083894)	65.0	NM_001289582	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	6.31119143451652	6.59107349692579	5.99641827199293	5.73961628895779	5.78942449505286	5.3969216725162	-1.15456105568159	0.000687226286872	0.0134960408019932
Merged-chr4-32252559-2	chr4	32252067	32253067	+	540.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164868.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.04774596483654	4.18555280503527	4.36605130253531	3.67768408968601	3.53417182054372	4.22992567890649	-1.0837290505113	0.0588965788849244	0.31414975589557
Merged-chr13-47103655-2	chr13	47103155	47104155	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	2566.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	2.44349965798629	2.50101073937789	2.59414562274581	2.42000347928591	2.23571155101363	2.60649250542931	-0.544713073890105	0.515347877276379	1
Merged-chr3-101800595-3	chr3	101800107	101801107	+	806.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35616.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	4.87699421775676	4.97153047441564	4.80824495143387	4.00966585475068	4.16877911404629	4.29285727106081	-1.86691174861972	2.99556107438954e-05	0.00102616157216058
Merged-chr4-59044967-4	chr4	59044478	59045478	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	9822.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	4.35496043250311	3.80599884978188	3.63040862196621	3.55414250718701	3.53973643157237	3.64664790186081	-1.29784185751996	0.0294007469738884	0.206166977431595
Merged-chr5-105294120-4	chr5	105293618	105294618	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-419.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	5.98926647311908	5.83420930847655	5.79604798784806	6.42223548333577	6.12813225561096	5.91051307265955	0.512117988530295	0.102001873886532	0.425944591104616
Merged-chr15-83463390-2	chr15	83462890	83463890	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	1216.0	NM_001358641	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	2.20539390031071	2.2747432647938	2.15530926158489	2.39064189784123	2.14155523386796	2.43012242760997	0.733891397191868	0.40518077581521	1
Merged-chr14-47071923-1	chr14	47071423	47072423	+	795.0	f1_balb.idr	intron (NM_001310544, intron 1 of 7)	intron (NM_001310544, intron 1 of 7)	2946.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.27075488145891	3.61373892961209	3.17440316197307	2.76034371942512	2.57817499475812	2.72818333666722	-4.28792279461946	2.38469770755405e-05	0.000848699430496823
Merged-chr17-12307918-4	chr17	12307449	12308449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	10711.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	3.8303282876317	3.58403672828013	3.75997722558489	3.93883007935355	3.60487456999376	3.97650829812302	0.373415788386889	0.498284938840808	0.833856267944725
Merged-chr6-31427462-4	chr6	31426962	31427962	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 3 of 17)	intron (NM_013791, intron 3 of 17)	28634.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	3.4997448010933	3.83773711445031	3.72976633204522	3.84516965228491	3.68578981275518	3.85015939307255	0.309743040928254	0.573061726491879	0.869947175774374
Merged-chr13-42254049-4	chr13	42253553	42254553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47423.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.36776766087914	3.90657536806684	4.24000690887171	4.42357408872943	4.19000864297266	4.39546489420173	0.4075332187034	0.404245930009904	0.77945770433258
Merged-chr1-106794102-2	chr1	106793602	106794602	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009190, intron 1 of 10)	intron (NM_009190, intron 1 of 10)	2623.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	3.89359376201491	3.88151749714601	3.61330137414573	3.75161794284456	3.66660001569495	4.03851930959528	0.0340134202983931	0.950674080193103	0.988462504713506
Merged-chr10-128695831-3	chr10	128695341	128696341	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	427.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	7.97753883435405	8.25928551192862	8.04294101644525	8.01223981581016	8.24571385242363	8.19460804118596	0.0764957185971814	0.731485473358884	0.931433343544303
Merged-chr4-141762814-3	chr4	141762359	141763359	+	847.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	16184.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	4.51005146449079	4.47304998618633	4.46670402775089	3.58611543784972	3.80684943830994	4.09805850020702	-1.88760603101425	0.000309643993190752	0.00715690482928224
Merged-chr4-126256473-4	chr4	126255975	126256975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-156.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	8.04464936143032	7.68592813200278	7.87946862197555	8.05828731176103	8.00077696684363	8.23600651479432	0.312400804353903	0.175340712807127	0.55518665212738
Merged-chr3-15590901-4	chr3	15590398	15591398	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15833.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	4.20990278776174	4.2117410040625	4.05568968551121	4.37694791431636	4.43989202182151	4.31794962634831	0.579720389034822	0.204280547671703	0.594785352742216
Merged-chr5-150594599-4	chr5	150594115	150595115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133898)	promoter-TSS (NM_133898)	-90.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	8.86760470074528	8.9538018525677	8.65735160338672	8.8495711630104	9.01607124851076	8.7172773122957	0.0477851996663368	0.824010826328164	0.958461473318254
Merged-chr11-90225019-4	chr11	90224528	90225528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24448.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.99037187585496	7.0670240806365	6.80133579010123	6.48601006043431	6.74423364569301	6.54494498817999	-0.561119605889384	0.0328499925424861	0.220843676131145
Merged-chr10-68124445-1	chr10	68123945	68124945	+	726.0	f1_balb.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	144875.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.31537507278259	4.28822543462069	4.35956610616184	4.1511954668242	4.18385092085553	4.5065333225894	-0.106048944534094	0.818222078820824	0.956886944398959
Merged-chr11-26600157-1	chr11	26599657	26600657	+	905.0	f1_balb.idr	Intergenic	Intergenic	-6237.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	4.40206282416644	4.62142468301611	4.50541255760508	4.599754143662	4.95938292078937	5.32257787485541	1.08017357534517	0.0154522020149505	0.135470111185334
Merged-chr6-54973036-4	chr6	54972520	54973520	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172729)	promoter-TSS (NM_172729)	-408.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.49178609583769	7.10759334523703	6.51759563808925	6.89297860092493	7.03380966283107	6.79786098473876	0.257039843954457	0.393479465377683	0.771604147212602
Merged-chr9-88599620-4	chr9	88599130	88600130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040766)	promoter-TSS (NR_040766)	-387.0	NR_040766	320692.0	Mm.427378	NR_040766	ENSMUSG00000097073	9430037G07Rik	-	RIKEN cDNA 9430037G07 gene	ncRNA	4.52324359300232	4.5750727399336	4.41925194811499	4.45346531603077	4.16311842548244	4.20996290743263	-0.599016047160886	0.183293637441961	0.566377400373361
Merged-chr4-101741706-4	chr4	101741209	101742209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24302.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	7.45171456805825	7.59063748699238	7.07737251146286	8.29358189242623	8.49021973795633	7.70402539410323	1.16213049234608	7.95069559262033e-05	0.00233748103557255
Merged-chr12-12319555-2	chr12	12319055	12320055	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	57416.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.09135799342986	4.25714529018246	4.40992823386795	4.4603736022191	4.22475476807189	4.43495641559436	0.319144321758018	0.489701171920549	0.829878922875051
Merged-chr11-78513629-2	chr11	78513129	78514129	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026389, intron 1 of 10)	intron (NM_026389, intron 1 of 10)	1333.0	NM_026389	67811.0	Mm.197493	NM_026389	ENSMUSG00000001100	Poldip2	1300003F06Rik|Pdip38	polymerase (DNA-directed), delta interacting protein 2	protein-coding	1.88753592922542	1.8938846954711	2.08417891299375	1.76981452150977	1.96966027293085	1.75208392227908	-0.990583974607641	0.346296364915531	1
Merged-chr5-108447940-4	chr5	108447411	108448411	+	773.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1189.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	3.67715832259557	3.48431659356942	3.87709718423596	3.22655403915748	3.52054325531813	3.55365659343712	-0.861798277647442	0.156979302165851	0.527819391501563
Merged-chr6-13838742-4	chr6	13838267	13839267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 2 of 4)	5' UTR (NM_001330666, exon 2 of 4)	1175.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	5.04280418253014	5.21726518051296	5.06126804734062	5.1300563227948	4.76941358609276	5.15913454661462	-0.195777951023454	0.610382831919819	0.88555733136329
Merged-chr10-127662256-4	chr10	127661773	127662773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122895, intron 5 of 5)	intron (NM_001122895, intron 5 of 5)	4430.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	5.59947420020687	5.53126297991146	5.78492435017052	6.00786933042912	5.82310367108975	5.89507988421286	0.497925023606493	0.109497511500566	0.442183295982202
Merged-chr10-59321308-2	chr10	59320808	59321808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-1988.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.03101019403538	3.77231032487065	3.77535429198918	4.11099943278952	4.0529264321064	3.95191802568306	0.52194222337804	0.307739842698664	0.703816371678414
Merged-chr19-59345881-4	chr19	59345390	59346390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-110.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	7.06050744443592	6.98952245817832	7.1173059083833	7.04144284456508	6.70251516723916	6.78963113458486	-0.310789335401362	0.222319801338927	0.617243444438087
Merged-chr12-69365999-4	chr12	69365493	69366493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6157.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	5.97808558975817	6.31173608142019	6.1171049765836	6.21080320034269	6.64909758416871	6.45435982297903	0.519459704745425	0.0856020347102575	0.387423122337292
Merged-chr10-120125334-4	chr10	120124843	120125843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12378.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	3.51790376009088	3.52246567370276	3.44587569470405	3.44903684674471	3.12074391336435	3.57029640293102	-0.423114089569387	0.494973818193228	0.832153667472614
Merged-chr5-32141402-2	chr5	32140902	32141902	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	4930.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.32718449695608	2.35405766979235	2.46851989599319	2.39528706389718	2.19158327786464	2.2143665179025	-0.751974327025803	0.38119646149166	1
Merged-chr5-110780614-4	chr5	110780119	110781119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347390)	promoter-TSS (NM_001347390)	-4.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	6.92532978013146	6.63151065445789	6.76068550037733	6.92341352872988	6.67886441254959	6.31199286790137	-0.16805840874741	0.565396127149393	0.866638683758804
Merged-chr3-122209065-3	chr3	122208562	122209562	+	743.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36495.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.28827530929682	2.82734006509026	3.11395863270697	3.10592320949279	3.08012094585489	3.12777610126304	0.0526629010341765	0.939274320392045	0.986642049891601
Merged-chr8-119353507-5	chr8	119353005	119354005	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8967.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	4.41959874772151	4.40367767295856	4.49014076554959	4.44321714839455	4.19049577485634	4.29714682344281	-0.325480545293637	0.464724696300418	0.816486751050784
Merged-chr4-43960501-4	chr4	43960013	43961013	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	B4A|SINE|B4	2811.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	5.84659316838285	5.50355343792645	5.63685202554296	6.00229950394048	6.34954350569117	6.15998283304733	0.896915210998363	0.00471498500317796	0.05880884273956
Merged-chr8-4238753-4	chr8	4238268	4239268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	28.0	NM_001164172	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	6.65103734756615	6.82914235564992	7.05127920430518	7.19046983414443	6.88335120920171	7.00552719567636	0.283388391715574	0.286486969984122	0.683725296730741
Merged-chr19-12461888-4	chr19	12461468	12462468	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	1189.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	8.52924654843586	8.64881038115399	8.46028302085874	8.51253098526405	8.85100573505471	8.56960958401368	0.147727188929157	0.497211231621384	0.833500500620649
Merged-chr2-131258926-4	chr2	131258402	131259402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3106.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	5.86035153471038	5.82161373970171	5.64537542546413	6.20727909474171	6.45936462111399	6.3572073139266	0.959750361266856	0.00118890105244951	0.0206247765677487
Merged-chr6-91679206-4	chr6	91678715	91679715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.88915342716133	6.06074349400971	6.17792410842657	5.77403801397295	6.28304818548316	6.09157988376827	0.0539366449039555	0.865318893786841	0.968641478520565
Merged-chr16-57182102-3	chr16	57181609	57182609	+	895.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358433, intron 14 of 18)	intron (NM_001358433, intron 14 of 18)	-14777.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	5.4546362211008	5.44274241969041	5.66007301922747	5.51017839260231	5.78256997885896	5.89190075062652	0.409008027940473	0.216308088784198	0.609736247697899
Merged-chr7-80072597-2	chr7	80072097	80073097	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	2660.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.29643191129594	4.61771143438577	4.97249472844408	4.44851251484331	4.48332552850956	4.97226708527039	-0.00273595534085738	0.995454992655887	0.998961028701257
Merged-chr6-31399771-3	chr6	31399258	31400258	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	930.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	7.08769987591461	6.69246959339265	6.92238439537473	6.89773403451337	6.84991438042008	6.32738216293693	-0.283644667943746	0.33905575742203	0.729033838016753
Merged-chr7-130657959-4	chr7	130657441	130658441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-34615.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	3.57725435387966	3.53133328438898	3.5098535769543	3.56918665380418	3.10121315302818	3.41455354509021	-0.632845553944982	0.311292817332788	0.706465219571547
Merged-chr11-114877299-6	chr11	114876843	114877843	+	866.022217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-12698.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.82631765280689	4.5579803959687	4.78202203217967	4.80050253508948	4.49668987587938	4.81015832400071	-0.0536576031291426	0.898162053323672	0.976261391798139
Merged-chr2-167714015-2	chr2	167713515	167714515	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22838.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.305368060982	5.23015637032418	5.04826385161147	5.07092047005854	5.24405725115786	5.07764627207148	-0.136701715282583	0.705902815986927	0.922834459892351
Merged-chr13-96548089-4	chr13	96547586	96548586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 1 of 17)	intron (NM_023420, intron 1 of 17)	5351.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	5.38221998145593	5.73057318577121	5.09788396842131	5.62513546892994	5.71621143839079	5.5905669094621	0.379475374738571	0.296309061666827	0.693022144754045
Merged-chr10-58382155-4	chr10	58381666	58382666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	10712.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.0200379403109	5.14067919705921	5.07141747871261	4.87809666661817	5.34545882392165	5.03053907939864	0.0700528198359223	0.855694008721262	0.966244542232428
Merged-chr1-155158639-4	chr1	155158160	155159160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021433)	promoter-TSS (NM_021433)	-43.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	6.74894311690827	6.65527956330059	6.47902815955411	6.79998842884533	6.43906324232204	6.32272425852301	-0.154144378408828	0.590647824786914	0.877301111216348
Merged-chr12-101976889-1	chr12	101976389	101977389	+	739.0	f0_balb.idr	intron (NM_016856, intron 1 of 14)	intron (NM_016856, intron 1 of 14)	915.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	6.52561538792165	6.77959993861983	6.66498842559151	6.41323846527555	6.60048274116573	6.48503512577815	-0.248200338077454	0.352378644608827	0.740064688220826
Merged-chr4-136181655-2	chr4	136181167	136182167	+	616.333374	f0_balb.idr|f1_balb.idr	intron (NM_177733, intron 4 of 6)	intron (NM_177733, intron 4 of 6)	885.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	2.21346522941979	2.07669075760298	2.24555466133707	1.97543182324875	1.84044532043468	2.05693076539542	-1.91250044972379	0.0587376897923866	1
Merged-chr12-110890529-2	chr12	110890029	110891029	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289510, intron 1 of 19)	intron (NM_001289510, intron 1 of 19)	1265.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	7.08560903898674	7.010871613401	6.38687751165597	6.94277040693138	7.0530130646899	6.77717809556135	0.0875176060356496	0.770322513628243	0.943392092118189
Merged-chr11-74770800-4	chr11	74770303	74771303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026197)	promoter-TSS (NM_026197)	-60.0	NM_026197	67493.0	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	6.9038532558049	6.51514877644143	6.80099080298212	6.64339350873325	6.51933455644917	6.5731021285624	-0.269175767823615	0.320715550705554	0.714532129212091
Merged-chr9-65206012-2	chr9	65205512	65206512	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8678.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	4.79219594859692	5.41580061949297	5.07923533069574	4.87405393083325	4.9795713215922	4.72786192655694	-0.545954285633127	0.190881283024801	0.577428967011753
Merged-chr12-69372537-4	chr12	69372068	69373068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007481, exon 2 of 2)	5' UTR (NM_007481, exon 2 of 2)	418.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	8.25976650693324	8.37866881989735	8.30994629938549	8.2882813426622	8.02044565081165	8.17641379997732	-0.215229688526122	0.311670143216213	0.706631105711982
Merged-chr8-91071225-2	chr8	91070751	91071751	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	1194.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	6.78384355089872	7.11770451298432	6.72596818166446	6.82456177948327	7.00650323760349	6.42206679515462	-0.165747981990115	0.575216442987088	0.870967954417344
Merged-chr10-88351880-4	chr10	88351383	88352383	+	821.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	5192.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	4.54130615558671	4.52386421330014	4.54474057144569	4.65018597017168	4.67306436570227	4.56976561642351	0.241984937514917	0.556174344022895	0.86357390983939
Merged-chr13-85189925-3	chr13	85189445	85190445	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023243, intron 1 of 8)	intron (NM_023243, intron 1 of 8)	560.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	7.45449607918038	7.83464264622285	7.48684224519342	7.27096237643266	7.37215049668174	7.30606070395236	-0.426228411604711	0.0807960041632522	0.376081561461934
Merged-chr10-14045967-2	chr10	14045530	14046530	+	771.833374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	79651.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.26267174252882	3.28089343984762	3.53580967961806	3.40924454977842	3.89579451142029	3.94724168494291	1.48004198115888	0.0164138527429835	0.141471292628773
Merged-chr19-46516043-2	chr19	46515543	46516543	+	677.333313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053100, exon 6 of 6)	3' UTR (NM_053100, exon 6 of 6)	14395.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.99265270420452	5.20766000180473	5.23775086916008	4.93570114391766	5.0357973959567	5.14208202039165	-0.231341406317326	0.530208136122292	0.851070276054813
Merged-chr12-78860101-2	chr12	78859640	78860640	+	794.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	1498.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	4.92572657647031	5.04512868343511	4.98619784543181	5.3068748447258	4.79326363849145	4.90358223659929	0.0712639133893345	0.858020691500429	0.966785186918462
Merged-chr10-84401335-4	chr10	84400829	84401829	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	39142.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.10943749454517	6.25141403092603	6.0274552152473	5.88468066854543	5.90344089163235	5.7661835210141	-0.486364138178733	0.099747940864916	0.421136841555491
Merged-chr17-70830313-2	chr17	70829813	70830813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	16464.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.29654746931766	6.0572662493748	6.58477349764489	6.07646479330225	6.26091686683133	6.10664555545039	-0.274925678990969	0.367942575118131	0.752923975674939
Merged-chr14-87213278-1	chr14	87212778	87213778	+	685.0	f0_balb.idr	Intergenic	Intergenic	-72054.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.37038700400499	2.21022025627804	2.34728771527519	2.03174589615343	2.08194259134121	2.0953714995175	-1.90438331958429	0.0449748454302555	1
Merged-chr1-94711573-2	chr1	94711073	94712073	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85869.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	3.67429182417871	3.94910757229556	3.56362912718701	3.66671805759051	3.83257237684806	3.74575441635926	0.0162665670417247	0.976693052752403	0.994723308989508
Merged-chr17-24735308-2	chr17	24734765	24735765	+	996.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025425, intron 4 of 6)	intron (NM_025425, intron 4 of 6)	-1328.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	3.80564624711477	3.98173400017843	4.21769523509396	3.90094726877894	3.98348187187814	4.28404169642788	0.160043359747518	0.757488431377267	0.939883186830738
Merged-chr2-101783460-4	chr2	101782949	101783949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14258.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.47302237903022	6.64658875612501	6.60217647880113	6.64499522015578	6.9705263222842	6.64446622180953	0.311321678039163	0.249021558471544	0.645963956644956
Merged-chr5-140704521-1	chr5	140704021	140705021	+	1000.0	f0_c57.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-490.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	6.6181717243409	6.32783813652386	6.6126477918835	6.65351294952309	6.73105577172975	6.21315194959474	0.0669363490419014	0.821102796049463	0.957942312428027
Merged-chr2-160086564-4	chr2	160086018	160087018	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69865.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.12046757993257	7.10387799415055	7.14142607303039	6.5164413901799	6.24977863697508	6.62590028629171	-1.03251873146204	7.59783241114592e-05	0.0022490232631328
Merged-chr19-5846766-4	chr19	5846235	5847235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	9.06538678705283	8.87897746205461	8.43409980382248	8.81326660735569	9.00293136998312	8.34674068317445	-0.0940930217880752	0.733018018051582	0.931985446585439
Merged-chr2-90497661-2	chr2	90497161	90498161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	RMER15|LTR|ERVL	-18487.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.60638073953893	4.56993829715196	4.81246780726775	4.7704059455253	4.50667103120894	4.94640522652072	0.192136339277543	0.650332843852353	0.902576889668442
Merged-chr2-112262633-3	chr2	112262110	112263110	+	857.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025403, exon 2 of 2)	3' UTR (NM_025403, exon 2 of 2)	684.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	5.65978861733011	5.7155263538934	5.71019908761486	6.37624895950959	6.27894451956507	5.95457592654669	0.923482825441858	0.00248284499643211	0.0365391875598024
Merged-chr9-75404919-4	chr9	75404445	75405445	+	842.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	MTD|LTR|ERVL-MaLR	4414.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	3.94253124275481	3.8721808183017	4.17747824410109	4.421042272155	4.02521684184717	4.53350164237883	0.950430907314039	0.0609053412448986	0.319755622572778
Merged-chr12-99464490-4	chr12	99463989	99464989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14415.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.44508745232199	4.54021803371205	4.06063913021202	4.92993523574575	4.76181598736104	4.39499471904568	0.836225583111755	0.083834410156425	0.383205048783699
Merged-chr4-9649576-4	chr4	9649089	9650089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5872.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.33485702579374	5.98153802880109	6.26484985799076	6.93423948875569	6.98202626637142	6.70700844767865	1.10069361028765	7.90278476377232e-05	0.00232522954251756
Merged-chr5-125278561-4	chr5	125278044	125279044	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	62550.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.60811661198922	3.4887211035916	4.0290772718652	3.67396851970128	3.33600437571677	3.72904673375823	-0.462660146197735	0.446609790782443	0.806071482179202
Merged-chr7-80069521-7	chr7	80068935	80069935	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	5822.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.58871695022746	5.22505433189857	5.38660865123236	5.50430237671649	5.0257984083318	5.12261107572866	-0.348264771336225	0.356818962657297	0.743460467581681
Merged-chr7-82648526-4	chr7	82648019	82649019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	9.0	NM_177894	330577.0	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	5.58288300705161	5.78230906921151	5.70038743136844	5.75827701886666	5.72334413793173	5.68238345126248	0.0578118303405739	0.852779331811088	0.965544656676077
Merged-chr2-72373802-4	chr2	72373293	72374293	+	911.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	88092.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.0567009836448	4.22257195678748	4.2646745002111	5.62001388869214	5.60344611517585	4.93325665946181	2.92854441720847	1.57653464525029e-10	2.02126802406759e-08
Merged-chr7-28803159-2	chr7	28802659	28803659	+	924.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7731.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	3.96440105396507	3.81748007248636	4.32368251821392	3.92590567864991	4.27834485590491	4.08477452362239	0.194066455879276	0.711061593039299	0.924558647751225
Merged-chr2-165333371-4	chr2	165332869	165333869	+	918.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6890.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.19150247879739	6.14875625311855	6.69799851279458	6.23997980937362	6.20816653716526	6.683017531318	0.0432832335248331	0.894079178892134	0.975337673545585
Merged-chr14-122534866-2	chr14	122534366	122535366	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	538.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.8662006575942	4.73451449155034	4.52394779657492	4.91809901233813	4.77992235114275	4.72080186609144	0.195041088050797	0.632693289199057	0.89564543812714
Merged-chr8-125720267-4	chr8	125719785	125720785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13918.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	3.77935125485031	3.71129886993422	3.93300737935982	3.96141194239007	3.88526819302952	3.63697851450672	0.115624162020639	0.828953915066487	0.959932344512127
Merged-chr3-52391287-4	chr3	52390765	52391765	+	899.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122928.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	2.44422964970715	2.27289027003085	2.36524466345051	2.4340046926744	2.46704000126297	2.56772194137168	0.791087198941448	0.333170107707341	1
Merged-chr7-35067984-4	chr7	35067482	35068482	+	803.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11416.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.04181968284564	4.38160231240691	4.62462000832092	4.45632830783611	4.29612460384011	5.07518645453943	-0.157159219960657	0.75724561753403	0.939819795914786
Merged-chr7-132827714-2	chr7	132827214	132828214	+	828.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347629, exon 4 of 4)	3' UTR (NM_001347629, exon 4 of 4)	-14518.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.28283248113746	4.00995105139686	4.04597445105384	3.86671104254558	3.95049178293861	3.69315637384023	-0.815619779925057	0.118497351297902	0.459921210483695
Merged-chr9-40834870-4	chr9	40834379	40835379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33606.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.65971490335617	4.07890773435841	4.17067260576479	4.24710419660581	4.38754818702594	4.36934714111932	0.991863978880504	0.0523916210624673	0.292739899875201
Merged-chr2-131088685-4	chr2	131088292	131089292	+	767.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	6.27585187834368	6.28861125085763	6.7593037059889	6.59644904484704	6.72223823324732	6.8877123930716	0.460442991472729	0.113572140471769	0.450187448195983
Merged-chr2-148672562-4	chr2	148672061	148673061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019761)	promoter-TSS (NM_019761)	-54.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	5.78500694772418	5.82527298399701	5.88120092500782	5.89562855213484	5.81718699612912	6.03350621424202	0.146473491718257	0.625765923218665	0.892642521801078
Merged-chr12-81719359-4	chr12	81718863	81719863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61807.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	4.88339537651578	5.01873265579009	4.98508226973392	4.67790409998845	4.58438564875097	4.7580055479199	-0.672655309582565	0.08567959928191	0.387639946459832
Merged-chr18-46273765-4	chr18	46273269	46274269	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	7081.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	4.93402468464214	4.95432742272609	4.9307477625257	5.53325301502153	5.79993560944813	5.21901663448102	1.23491195228554	0.000927938107333109	0.0169808388025013
Merged-chr13-112602780-4	chr13	112602296	112603296	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145885, intron 18 of 21)	intron (NM_001145885, intron 18 of 21)	-22134.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	4.28786961302503	4.47761866039037	4.53498364514113	5.09892485109668	4.96502209331645	4.88173271771678	1.30191189453116	0.00150664000938275	0.0248246538417267
Merged-chr9-65525894-6	chr9	65525425	65526425	+	860.1555179999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54162.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.16418919157106	4.39791100033201	4.6548741788712	4.48391716806212	4.2181728334844	4.44650706000708	-0.074593412256548	0.873362372037576	0.97040331531529
Merged-chr6-83032115-2	chr6	83031615	83032615	+	568.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010070, intron 4 of 4)	intron (NM_010070, intron 4 of 4)	1356.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.20073335807877	4.58995795713911	4.46608935066814	3.9083643859772	4.00130954216663	4.14120313680215	-1.14881527895923	0.0183067931003773	0.152632428887394
Merged-chr11-120511860-2	chr11	120511360	120512360	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-18867.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	2.75387107761509	2.83703705584778	3.0867431651644	3.00120927288901	2.77987988117442	2.67112903313057	-0.339055193517043	0.649777252032141	0.902329237588917
Merged-chr9-44169323-4	chr9	44168813	44169813	+	913.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	34655.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	5.75641507858557	5.89017526167029	5.72642509981706	5.59920700434437	5.57257447441032	5.38085643875058	-0.494480438123007	0.122226788436071	0.467705063793452
Merged-chr5-146804532-4	chr5	146804039	146805039	+	692.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9583.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.78980555678018	6.73368791511492	6.81589676769178	6.82805257354282	7.05103189039711	6.87432313213473	0.23075509464019	0.355287811186598	0.742238515390658
Merged-chr2-148523149-4	chr2	148522647	148523647	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79612.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.13420619854224	5.9965567518682	6.34319186453408	5.90956843779584	6.19900204825891	6.40252121696576	0.0390195937639991	0.899777351310122	0.976709289114888
Merged-chr12-55467774-2	chr12	55467274	55468274	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24873.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	2.55047325284872	2.8276362652643	2.55208198038148	2.6599687707323	2.50524633967357	2.75342966079113	-0.0799585356007166	0.919028997427488	1
Merged-chr16-50395878-2	chr16	50395378	50396378	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36511.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.64994419817943	4.57066805576133	4.32413775579333	4.61118714145984	4.47057180094558	4.48435619359588	-0.0213285928918478	0.960759260247766	0.990386809359123
Merged-chr10-117089822-2	chr10	117089322	117090322	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 4 of 9)	intron (NM_177798, intron 4 of 9)	-25970.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	3.0770818585321	3.22987806952134	3.2593998676169	2.95211650952907	2.76132144283267	3.10701228435591	-1.16278859121257	0.0962425384760592	0.413537265247402
Merged-chr17-25139005-4	chr17	25138492	25139492	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	B4|SINE|B4	2361.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.87676143589293	4.71944158538737	5.14581601872676	5.59276008538861	5.54690218697268	5.79040541429986	1.47419124743469	5.40247101573784e-05	0.0016848905857478
Merged-chr1-135726129-4	chr1	135725637	135726637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	-3030.0	NR_153810	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.67132133006468	5.25077886858386	5.20306443346881	5.74642635052081	5.8195423375372	5.37193905110268	0.505617908727455	0.16955673179464	0.546439877378084
Merged-chr5-114699770-2	chr5	114699270	114700270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2a2_Mm|LTR|ERVK	-8009.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	7.98633142155048	7.73827054183854	7.68902483615069	8.24436238843342	8.33491595232368	8.06428624454024	0.578691589982853	0.0110987334401446	0.108214601838242
Merged-chr11-102185293-4	chr11	102184767	102185767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172947)	promoter-TSS (NM_172947)	-11.0	NM_172947	268490.0	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	7.74969439718696	7.74659787980143	7.55212578658054	7.73532204672908	7.79021316546185	7.32560001931601	-0.0682085368656012	0.782540835967127	0.946598308970484
Merged-chr18-56716514-3	chr18	56715980	56716980	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	8667.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.4964815946557	3.50706414006165	3.3075837115417	3.48201863671314	3.44965611826594	3.65307719458011	0.29530201118442	0.61506113002415	0.887751851845643
Merged-chr11-52098668-4	chr11	52098172	52099172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019411)	promoter-TSS (NM_019411)	-152.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	9.13177624962558	9.02460727235347	8.69176050040578	8.93496275578756	8.84862859297832	8.74189246366925	-0.167075585582918	0.449109188970707	0.807594795348397
Merged-chr19-21913912-4	chr19	21913408	21914408	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135568.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.80319425332299	6.96221430240657	7.00951829321336	6.71953734114822	6.97445420595048	7.08011791486147	0.00910477624778071	0.971860655113722	0.993825429717737
Merged-chr8-70647533-3	chr8	70647034	70648034	+	783.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12204.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	4.64594829517698	4.24357068707902	4.38519515998343	4.97859291530397	5.35809140204241	5.06198696822882	1.61931144241536	0.000174326510017791	0.00447972830313786
Merged-chr18-69365359-4	chr18	69364850	69365850	+	660.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	(T)n|Simple_repeat|Simple_repeat	19190.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.22880399627769	3.2776993878938	3.43981691657334	3.21176576386768	2.97256608098785	3.23901577917136	-0.73459284123248	0.255784758899065	0.652783039457534
Merged-chr7-118169977-2	chr7	118169477	118170477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40352.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	6.57613760896563	6.26709425478219	6.34762192047886	6.41306394671195	6.61600298647523	6.68610225345844	0.271558439981437	0.330101220753572	0.721715864639844
Merged-chr2-94178526-2	chr2	94178026	94179026	+	791.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20617.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	6.41462971381351	6.7295916345873	6.54603933894692	6.60305681789503	6.61567803860562	6.23535525496953	-0.104352250478367	0.71492631300082	0.926165166622641
Merged-chr19-3699660-4	chr19	3699144	3700144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8649.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	4.2763435154469	4.10904364083739	4.35847954730228	4.17589830923946	4.07163701339477	4.42474701087742	-0.0677041684861182	0.886660001690404	0.973794308941933
Merged-chr3-88631159-4	chr3	88630671	88631671	+	749.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	9777.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.00840499855275	4.06254512999515	4.19542000589064	3.91952897959627	3.77531002751961	4.3852360615025	-0.133652060888537	0.800420682279038	0.952530841455605
Merged-chr7-97400064-4	chr7	97399559	97400559	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024220)	promoter-TSS (NM_024220)	56.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	5.99279921583512	6.20177963511585	5.65454879262822	5.9592251734494	6.26747432913519	5.628248291654	0.0225339574320015	0.949204158289746	0.988169196639905
Merged-chr15-64061338-4	chr15	64060806	64061806	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-858.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.78362418123033	5.88653228916203	6.04304490032965	5.89478477393136	6.0484546771697	6.20546356749122	0.261743517525895	0.38748118128949	0.76768118438771
Merged-chr12-108204076-4	chr12	108203574	108204574	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009832)	TTS (NM_009832)	24336.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	4.77797655787001	4.45641944264946	4.48589500106294	4.70095063666334	4.87393581342005	4.46375536737891	0.273420177572679	0.53289715220616	0.852012878595971
Merged-chr9-118682418-2	chr9	118681930	118682930	+	810.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-29262.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.22409201815781	3.07793064668834	3.45269192222082	3.3524849738085	3.16049077557242	3.57301951903239	0.443221410106885	0.493286078521004	0.831208279358962
Merged-chr2-60903699-4	chr2	60903191	60904191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22253.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.23342049195441	5.41644846499022	5.24546178865527	5.57672380114134	5.66376450927523	5.61104023003659	0.601581126477664	0.0695852455733549	0.345200567201318
Merged-chr19-3909300-2	chr19	3908800	3909800	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	intron (NM_001271443, intron 5 of 6)	-2167.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.7158084879157	5.50703638971025	5.74175628059914	5.72632680325916	5.7490771540588	5.37089425646545	-0.0286239416266606	0.931807968389245	0.98494489810252
Merged-chr9-106295409-5	chr9	106294787	106295787	+	794.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	14226.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.45870350728667	3.82004054308345	3.64827640594462	3.93433129699713	3.92688661630189	3.87681850706448	0.842219920686432	0.124387330265857	0.471935660788902
Merged-chr2-167352174-2	chr2	167351674	167352674	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	-2996.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.75672800878565	6.64120801687782	6.59252502501627	6.84810078163264	6.97327836500248	6.27953497216639	0.127508489613016	0.670511433018073	0.910029595108128
Merged-chr11-54486278-3	chr11	54485775	54486775	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-36570.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.63691910466109	4.03236410355281	4.05383737165781	3.85818516823376	3.62994848488917	3.93630031209298	-0.347928612802283	0.526820732722312	0.849687525994762
Merged-chr6-54927038-3	chr6	54926530	54927530	+	737.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 11 of 11)	MTB_Mm|LTR|ERVL-MaLR	44631.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.71481000447351	2.79978841638565	2.62054259616286	2.79466820464016	2.7419392776603	3.17046370393602	0.969056235041806	0.202979671130228	0.592843991554776
Merged-chr3-135609262-2	chr3	135608762	135609762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	82285.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.20927220804867	3.96653655910979	4.43807940803644	3.91581493915874	4.32174912800871	4.54187851919399	0.186139743807225	0.720165238682873	0.928071578828455
Merged-chr11-98810659-4	chr11	98810149	98811149	+	890.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	-560.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	7.34251039462791	7.28408395691792	7.09953705280885	7.52359652302048	7.93445026572821	6.94101033587672	0.431306882874509	0.167061607200843	0.542705638009204
Merged-chr17-17902955-2	chr17	17902455	17903455	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15131.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	2.38779957145154	2.20425232666972	2.44818749333677	2.5437552260992	2.37287784722309	2.70794562910346	1.22429842375468	0.1501126596221	1
Merged-chr8-84437009-3	chr8	84436455	84437455	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	21591.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	3.76375894262644	3.95919948034096	3.8223643086947	2.98010689223646	2.91894015206232	3.36434388748604	-3.51975595520888	6.47572442690475e-06	0.000276465920017389
Merged-chr1-177261639-3	chr1	177261198	177262198	+	759.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-12931.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	5.6618679167898	5.67387543056408	5.73033853976024	5.33866853299776	5.54233995350284	5.43237926948303	-0.452957797743453	0.16206229215589	0.535342738509256
Merged-chr18-53176292-4	chr18	53175785	53176785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026386)	promoter-TSS (NM_026386)	-7.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	8.14579380865922	8.4451433812796	7.97006219085695	8.12725641793748	8.19488880247083	8.01071218856686	-0.130470380210739	0.578929785715292	0.872437129840066
Merged-chr1-162665298-4	chr1	162664796	162665796	+	944.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7077.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	3.75475391945718	3.70571836244703	3.72892023733499	3.65628721555701	3.48893762788872	3.69557858028815	-0.41249370984938	0.450145199529376	0.808173357988092
Merged-chr3-65974848-4	chr3	65974332	65975332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16583.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.28974424597206	8.79773095044549	8.27884272831238	8.33670192531572	8.75724584363053	8.29617369461004	0.0028635805864082	0.991381955937778	0.998232145282024
Merged-chr1-182108693-1	chr1	182108193	182109193	+	598.0	f0_balb.idr	Intergenic	Intergenic	-16044.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	2.57008520547746	2.49884724853061	2.68845060375073	2.51510076498984	2.56545526890649	2.6391497269717	-0.0668851480950788	0.930546399688499	1
Merged-chr16-43409328-4	chr16	43408835	43409835	+	893.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	10861.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	2.52266734219686	2.38559466073329	2.59502445909723	2.36514821331234	2.18574210186153	2.35143359814806	-1.34780305020786	0.117348531511356	1
Merged-chr7-44848697-1	chr7	44848197	44849197	+	1000.0	f0_c57.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	382.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	6.48557081510608	6.50011673590991	6.52275199852938	6.81046689775328	6.75534729067909	5.97726886659854	0.125207715061423	0.701431420817957	0.921305535334185
Merged-chr4-133087869-2	chr4	133087369	133088369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42764.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	2.99694392735534	2.75567678072687	3.09773228976487	2.85344901699351	3.12331749434174	3.16903878474777	0.463874800682983	0.513574780967949	0.842670972842347
Merged-chr8-105348042-4	chr8	105347547	105348547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081332)	promoter-TSS (NM_001081332)	-77.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	7.04967838377705	6.97632831638699	6.92033377737415	7.06999203284288	7.15642443289388	6.89115451517807	0.100280009575931	0.682939853587836	0.91523316791368
Merged-chr2-30268676-3	chr2	30268167	30269167	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	1848.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	4.80571326620464	4.72194473231117	4.8832851731026	4.58511035303566	4.63090393298231	4.60392529127147	-0.451815640979443	0.260504259997806	0.65794622752762
Merged-chr17-57337225-2	chr17	57336725	57337725	+	740.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-21461.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.99119343220905	5.0494291272621	4.93331699526032	5.414938150114	5.26802280972541	5.74058055770003	0.972506956067666	0.00882909548946852	0.0923160816144379
Merged-chr7-92878813-4	chr7	92878377	92879377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	3624.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	7.2974627867365	7.497394297959	7.26154252030843	7.43534404086456	7.77649386758725	7.47410622848764	0.318897303326323	0.193775604259371	0.581033530782477
Merged-chr11-118456453-2	chr11	118455953	118456953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1458.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	8.11530761694272	7.73305946234374	7.69649322925694	7.9309609813093	7.8689918044024	7.65983827830811	-0.0555007471635331	0.820675930324965	0.957787105141764
Merged-chr15-66092317-4	chr15	66091816	66092816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-115512.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	5.29568723067923	5.45439850015384	5.50327913165161	4.91326013318365	5.25586617091871	5.78790808637022	-0.112743514518569	0.780316295245136	0.945976443458414
Merged-chr15-97591522-2	chr15	97591022	97592022	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114300.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	3.902219274956	3.90510726681284	3.95174265386254	4.34091156567094	4.26473802921636	3.91771984914357	0.806904552502981	0.106933914523852	0.436454439973323
Merged-chr17-5520153-4	chr17	5519658	5520658	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	27558.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.67840835822468	4.66821725565365	4.97753989315406	4.31656942738214	4.54905430780864	4.97632552652535	-0.332737470776448	0.462896901847914	0.815511746112333
Merged-chr2-121171117-4	chr2	121170564	121171564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	61.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	7.28154171272488	7.37309740660586	7.28492278812776	7.11543149207186	7.41024459148195	7.09761745831638	-0.133949197329076	0.582814084146257	0.873826743013405
Merged-chr9-120049572-4	chr9	120049070	120050070	+	953.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009987, exon 2 of 2)	3' UTR (NM_009987, exon 2 of 2)	18726.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	3.36673228013722	3.52670997128275	3.78624557992922	3.23711173372671	3.18598635746541	3.16775476815918	-1.45126645134243	0.0226617016055852	0.175407894623026
Merged-chr13-52604667-2	chr13	52604167	52605167	+	711.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	RMER15|LTR|ERVL	7785.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.39840922541245	4.52228181441944	4.58794425299452	4.34616065881163	4.26158718623222	4.31837852399353	-0.503069672825004	0.251192948050911	0.648731936769727
Merged-chr7-27166712-6	chr7	27166149	27167149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	153.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	8.32441590053524	8.29423660749516	8.10045715982307	8.30014148733837	8.17903146583539	8.10675811585637	-0.0677581251670581	0.750787941976785	0.937631336785453
Merged-chr15-89179081-4	chr15	89178574	89179574	+	984.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1714.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	6.71475814084296	7.00551882436154	6.78072590685905	6.84757039273733	7.14275082310722	7.24594286878388	0.372799117028245	0.161328974110665	0.534168510920529
Merged-chr11-114989398-2	chr11	114988895	114989895	+	842.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	ID_B1|SINE|B4	491.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	7.46587637561684	7.65061045743043	7.48602107507824	7.77847661294302	8.15176163090769	7.81273235540561	0.566006921170699	0.0179029590196281	0.150183427170604
Merged-chr10-25331558-2	chr10	25331045	25332045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28253.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	7.02081652208468	7.20674278093493	6.58853308568824	6.9146598447772	6.95994953475295	6.66589442282233	-0.178409935035061	0.534475129982642	0.853068627162717
Merged-chr18-60526332-7	chr18	60525839	60526839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357462, exon 1 of 14)	exon (NM_001357462, exon 1 of 14)	185.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	7.43673828101384	7.63750589725316	7.48748225019659	7.47598485962767	7.63683501512698	7.59332087094971	0.0671589144622214	0.76735262231809	0.942617496111852
Merged-chr1-91051669-4	chr1	91051185	91052185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1759.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.94464547443118	4.76212275214634	4.95037427896429	4.76258629184222	4.57760921707995	5.23546261530446	-0.0256118676250438	0.952303069074181	0.989068549972429
Merged-chr6-82753797-4	chr6	82753313	82754313	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	20641.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.49876955165098	6.632059039558	6.32029933539196	6.90891568149274	6.72327087048291	6.55158742316302	0.387241516306584	0.160489579329772	0.533179626162727
Merged-chr11-96303323-4	chr11	96302806	96303806	+	928.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008268)	promoter-TSS (NM_008268)	-206.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	4.23039126960595	4.35809404224905	4.39377921236087	3.75718305667681	3.5288810809942	3.69988717980335	-2.11716831398588	7.14109754872293e-05	0.00212592645736722
Merged-chr10-95357928-4	chr10	95357441	95358441	+	958.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	21665.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	4.88300004058847	4.70519577068141	5.18714812196338	5.71941772638312	5.66840554584272	5.57980382881946	1.4814628014967	4.42292840746759e-05	0.00142478910928596
Merged-chr7-141464674-3	chr7	141464124	141465124	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-720.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	3.402484121683	2.93256179227927	3.46376387260939	2.90117555289149	2.71859372993548	2.98138647432553	-1.96993216765274	0.00903540525548524	0.0938269683812471
Merged-chr5-43880402-3	chr5	43879906	43880906	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	L1MC5a|LINE|L1	11597.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.72693160768833	7.48283077668783	7.73668591638956	7.55041515525224	7.92119704114841	7.56396263832966	0.0674180435159309	0.78392328860713	0.947375370336695
Merged-chr15-63999246-2	chr15	63998746	63999746	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-1180.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.39997333752469	3.67535789270336	3.5517000574809	3.60822130715828	3.39987643101286	3.39874129395164	-0.27579591854531	0.639235067416128	0.897955084741216
Merged-chr5-66091243-2	chr5	66090743	66091743	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B4A|SINE|B4	6936.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.19846381965894	5.27546552973702	5.11583937978132	5.70315215961387	5.52291926381913	5.69421406825609	0.839204571973861	0.013055855051897	0.121271666349436
Merged-chr12-98271816-2	chr12	98271316	98272316	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	3181.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	6.0551896078575	5.89951105458714	6.05662689068128	6.42712700859333	6.40346630560047	6.38361547882397	0.677580355280661	0.0146323044475133	0.130352114113005
Merged-chr10-40077798-4	chr10	40077303	40078303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-52535.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	5.25017155801199	5.60250149565524	5.3509571025374	4.62423369270136	5.33189642559453	5.29203215659803	-0.57292920055289	0.171425653123341	0.549502494224785
Merged-chr11-69079047-4	chr11	69078549	69079549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5623.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	5.1298386207202	4.96218108982931	5.31948725288526	5.28354697830004	5.35873598725324	5.38242486124637	0.420675807294876	0.237897507830427	0.634434019151762
Merged-chr17-25833483-4	chr17	25832940	25833940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-79.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	8.36502645069697	8.52744391281924	7.85597959401692	8.28394286256262	8.47592494086594	7.98672322728979	-0.024665331010009	0.927776065599874	0.983698457021454
Merged-chr13-23533783-4	chr13	23533270	23534270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175661)	promoter-TSS (NM_175661)	-141.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	4.65112167988863	4.54016068427781	4.77277731074822	4.81297000705088	5.13325413994133	5.01826883377384	0.788053276169488	0.0482286791842161	0.278450160304365
Merged-chr10-111165665-4	chr10	111165155	111166155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	CpG	853.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	7.29481163572109	7.36384442851341	7.26167604166477	7.15213803313096	7.13102419872238	6.77034687191942	-0.404157384951972	0.106645106281671	0.435916169724877
Merged-chr9-104574764-4	chr9	104574258	104575258	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	5275.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.09255003749068	4.05502758237819	4.16563415271818	3.3268293028962	3.15526797975036	3.48820588123322	-3.04575100040202	2.24339429039277e-06	0.000110651068236515
Merged-chr7-27454918-4	chr7	27454378	27455378	+	947.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290525, intron 1 of 4)	L1MB8|LINE|L1	2460.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	5.06815751936161	5.57556291109232	5.3398008770928	6.02852395161436	6.02784432461711	5.80747250921471	1.13032031896424	0.00110206200265601	0.0194157050851157
Merged-chr6-57756880-4	chr6	57756378	57757378	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	54423.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	3.91597439775674	4.09623227687431	4.2285540363355	3.91159952433085	3.90308264341446	3.87541721586927	-0.548438147875341	0.275794762147406	0.673242318833586
Merged-chr5-85914598-1	chr5	85914098	85915098	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	150985.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	2.87472075067263	3.22077555034137	3.02716312165768	3.15956140054561	2.95843792731876	3.10009295114208	0.0938859112921208	0.891040416708143	0.974714927935992
Merged-chr1-191718902-3	chr1	191718357	191719357	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 1 of 7)	CpG	462.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	3.28475570673583	3.38658892283583	3.42827840671637	3.62414567985591	3.14039645942836	3.20962129021483	-0.0857019989756723	0.893912134899813	0.975281562029123
Merged-chr18-77663942-4	chr18	77663421	77664421	+	899.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 2 of 4)	Tigger7|DNA|TcMar-Tigger	50089.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	2.85592593592833	2.78084771597382	3.09235066991637	2.94080178979433	3.00676343019941	3.27190690112453	0.770095594896147	0.272992521223964	0.670221931606384
Merged-chr15-62079612-4	chr15	62079134	62080134	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	40377.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.97274457601034	3.67070715162462	3.9381762049856	3.63990683827355	3.4688297219746	3.86421491803743	-0.685315003234722	0.222873480005865	0.617776133760918
Merged-chr4-136518700-2	chr4	136518200	136519200	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	L2a|LINE|L2	48939.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	3.76938820143769	3.81518850478218	3.92189695003401	3.74876203006547	3.82205627174961	3.73988617049956	-0.189897977110585	0.715755578508277	0.92647595514209
Merged-chr10-81129547-4	chr10	81129038	81130038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6733.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	7.29489281864942	7.19655097267436	7.10053858703681	7.16499590580072	7.43752875874093	7.28042281266882	0.1487528450491	0.536792866399713	0.854215768737235
Merged-chr13-42096251-4	chr13	42095746	42096746	+	967.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	44225.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	4.69425505533077	4.85621613805732	4.96662012062852	5.06339855140467	4.97516852894324	4.84830056500179	0.292596739179271	0.449450898238744	0.807782585062734
Merged-chr16-85072804-4	chr16	85072289	85073289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100578.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	7.08213635610899	7.2499908614848	7.1508053809348	6.96390792127339	7.26461547636778	6.9427743632369	-0.133192567410105	0.596858503655852	0.880063799680126
Merged-chr12-36029085-1	chr12	36028585	36029585	+	589.0	f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	RSINE1|SINE|B4	13393.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	6.35634443375084	6.35435371109072	6.21967508578928	5.56259857867545	5.26946150879192	5.7585434483975	-1.39827099899588	1.05811897100082e-05	0.000421262982483427
Merged-chr2-125123638-4	chr2	125123146	125124146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162417)	promoter-TSS (NM_001162417)	14.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	5.45533817340103	4.92542157887852	4.97502576529514	5.34615000653345	4.78579651570506	5.1126284554704	-0.103067932081601	0.80697229833499	0.954399610026228
Merged-chr11-105181977-3	chr11	105181449	105182449	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027956)	promoter-TSS (NR_027956)	422.0	NM_001294329	24086.0	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	8.1442342295545	8.26887996402404	8.39380336608732	8.32706750039472	8.04548593276319	8.24235042790834	-0.0874427131633264	0.690854629741674	0.918006228645383
Merged-chr8-25068287-4	chr8	25067760	25068760	+	838.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-29298.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.07378220476461	5.21222750868593	5.38651553715551	4.85990924885198	4.46063018863994	5.02111142167802	-0.948958923860928	0.0212052415492053	0.167802733126607
Merged-chr4-40144321-2	chr4	40143821	40144821	+	702.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	1056.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	5.89444684144235	6.0445805196269	6.09855570474863	6.09458047923794	6.04634204811033	5.85542174633594	-0.00255952999417237	0.993110070846258	0.998651348330892
Merged-chr14-25485755-4	chr14	25485254	25486254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	26569.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.44631179311043	4.68275600057175	5.12924284266859	4.88549164549799	4.95512546329239	4.61953170680555	-0.624717679325918	0.158786868584597	0.530592366400552
Merged-chr5-135570083-2	chr5	135569583	135570583	+	663.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2966.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	5.48179703670246	5.579919147718	5.69969840117357	4.69997308797505	4.82813785191563	5.30540656694692	-1.28065626831707	0.000919740416211463	0.0168782985186694
Merged-chr14-70176745-2	chr14	70176245	70177245	+	751.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253736)	promoter-TSS (NM_001253736)	70.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	5.34848573654899	5.39120259317864	5.57344732272789	5.0195390138869	5.07465428890634	5.41785050919381	-0.529523560721844	0.14221140738839	0.503446333443608
Merged-chr14-54392725-4	chr14	54392229	54393229	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	RSINE1|SINE|B4	16743.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.5001371637199	6.22924085746969	6.44869869601412	5.86070735838749	5.79520651733281	5.47411325308611	-1.13854259095412	0.000279862079765824	0.00657261189194319
Merged-chr11-75533643-2	chr11	75533143	75534143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1531.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	7.49536214760204	7.23051188845965	7.28142988777644	7.27571191006441	7.68182502784673	7.31572786067785	0.152463284398265	0.551465893718392	0.861230744829578
Merged-chr2-129340420-1	chr2	129339920	129340920	+	736.0	f0_balb.idr	Intergenic	Intergenic	-29482.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	4.175012686654	3.91668409287974	3.88575617936785	4.43131235512091	3.97450131688556	4.2512605064153	0.635775159217278	0.215366548929865	0.60884788514104
Merged-chr6-72135068-2	chr6	72134568	72135568	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-11871.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.46385152013926	5.76503910827136	5.81758058935527	5.61207206917476	5.76040978949738	5.44188458499374	-0.118319140986133	0.724870472699467	0.929475409375828
Merged-chr12-8521610-4	chr12	8521118	8522118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17948.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	7.06319083201594	7.43213523782363	7.07809951252166	7.19175591783824	7.42999929642262	6.69314021494763	-0.0801834840163291	0.788698777463904	0.94895503373255
Merged-chr11-97029928-4	chr11	97029446	97030446	+	987.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146027)	promoter-TSS (NM_146027)	-6.0	NM_146027	217140.0	Mm.46189	NM_146027	ENSMUSG00000020877	Scrn2	AV001119|D11Moh48|SES2	secernin 2	protein-coding	4.23365893640037	4.58075989080595	4.15751168586909	4.0221826707409	4.07290696008031	4.56691542273373	-0.290266813772849	0.569724465162919	0.868895247713032
Merged-chr14-50862711-4	chr14	50862219	50863219	+	857.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 6 of 54)	intron (NM_009351, intron 6 of 54)	7835.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.52026450685064	5.48376757619708	5.61416175957948	5.25473406079241	5.42156108284644	5.59641638712432	-0.213054718014873	0.525344733243146	0.848982097510195
Merged-chr5-23615794-2	chr5	23615263	23616263	+	614.5	f0_balb.idr|f1_balb.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	808.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	5.53160882311171	6.13831314136017	5.33342568425561	5.57379938597332	5.53236163459203	5.25996798884293	-0.483122973737257	0.216828632809197	0.610409611218582
Merged-chr7-141048434-4	chr7	141047932	141048932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	5.10159028194831	4.93526427810071	5.31950499604937	4.92577656010845	4.62095772394632	5.26641479036775	-0.363362607407094	0.384828997374148	0.765939128677896
Merged-chr8-105226093-3	chr8	105225608	105226608	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145604, intron 1 of 15)	intron (NM_145604, intron 1 of 15)	920.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	4.96038877394975	5.30512617809691	5.43484726967751	5.59950413193494	5.78445219525766	5.31243697944432	0.678522861204649	0.0674619965371849	0.339690033758916
Merged-chr11-103371828-2	chr11	103371328	103372328	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	intron (NM_183034, intron 8 of 11)	-8136.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.03327694818779	3.36418041271496	3.65907341843406	3.36977587472978	3.40208963339905	3.47654146827028	0.166475826949343	0.799051130807253	0.952173893940882
Merged-chr18-64957673-4	chr18	64957132	64958132	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65895.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.13438261015844	5.08221303207123	4.91171220164077	6.33417422377326	6.58708807991054	6.1272867965108	2.40927151922069	2.68984982778669e-12	4.78241505278793e-10
Merged-chr12-79295353-1	chr12	79294853	79295853	+	963.0	f1_c57bl6.idr	intron (NM_001008550, intron 2 of 41)	B1_Mm|SINE|Alu	929.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	4.84385664672249	5.26875966153037	4.58368885605028	4.58922325812564	4.47998945229508	4.51815747643081	-0.959090826173464	0.0305270463075564	0.211269605685699
Merged-chr13-37845801-4	chr13	37845303	37846303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	18410.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.62353151332952	5.76775340249627	5.98364309378001	5.6793118624961	5.54122785581506	5.68669055317365	-0.289993084915669	0.367281036842676	0.752189827798011
Merged-chr19-47461630-3	chr19	47461136	47462136	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	2775.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.20416491137647	6.1060980910304	5.69826186878342	4.47503675775555	4.18801907122377	4.40316049732196	-3.74274010803969	8.16903666422658e-18	3.88416687289695e-15
Merged-chr4-43537802-2	chr4	43537288	43538288	+	616.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011602, exon 43 of 57)	exon (NM_011602, exon 43 of 57)	-14234.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	2.49218207482578	2.52805668555331	2.83931866019689	2.49524573561097	2.62249564939983	2.73668608178232	-0.0197135318792031	0.980041747566071	1
Merged-chr7-110769417-3	chr7	110768909	110769909	+	928.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276301, intron 1 of 14)	intron (NM_001276301, intron 1 of 14)	1203.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	5.51322236036956	5.60067589686985	5.83091694057891	5.46869829237097	5.34917397376374	5.69854531255151	-0.272337961044705	0.420684813476215	0.789809159741176
Merged-chr3-135607316-4	chr3	135606801	135607801	+	830.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 13 of 24)	intron (NM_008689, intron 13 of 24)	84246.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.86956831252781	4.87684325437648	5.19918073170518	5.24907963792156	5.18905538860805	5.41056593754971	0.628164009025895	0.0905708886926642	0.400351811853974
Merged-chr2-35200329-3	chr2	35199820	35200820	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	CpG	800.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	7.52423540430827	7.39134189406106	7.47932323226039	7.46800222541039	7.43930118610055	7.46507237897217	-0.0125823653308399	0.95491472851566	0.989683851514547
Merged-chr1-155972514-4	chr1	155972082	155973082	+	969.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 1 of 37)	intron (NM_001039184, intron 1 of 37)	673.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	7.62953493199955	7.68012372797059	7.69688567914888	7.65972737313475	7.53352323503718	7.67356130761391	-0.0693975553281048	0.750556886670129	0.937564211523741
Merged-chr16-14352801-4	chr16	14352306	14353306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8752.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	6.71693414820307	6.74323087332044	6.56914940873876	6.85347817388261	7.1823032297026	6.99828744890197	0.52472292631196	0.0426514409194563	0.259003756290954
Merged-chr13-49191864-4	chr13	49191330	49192330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	4283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.66994857500585	7.74909226056499	7.61129969913254	7.58384602894017	7.63283786550254	7.35693933624144	-0.208066985632101	0.362405550277695	0.747861848583747
Merged-chr8-70611397-4	chr8	70610912	70611912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3098.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	7.98463697281944	8.36057252454113	7.76274877793781	8.13210248976702	8.55637116843811	8.28221501773662	0.381111100014015	0.14712290148172	0.511909441602868
Merged-chr10-94336340-2	chr10	94335871	94336871	+	718.666626	f0_balb.idr|f1_balb.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	24422.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.57591423596248	3.67203202310536	3.53483865545975	3.22401026959795	3.29165688110829	3.202160096742	-1.38583636683981	0.0237230879781213	0.180760165726127
Merged-chr16-90279234-4	chr16	90278729	90279729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	5257.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.75508785307609	4.24780785146956	4.33727848892595	4.43041299763978	4.30810358362853	4.31359535670626	-0.309407651865223	0.509807643466999	0.840575466220373
Merged-chr19-12011795-4	chr19	12011317	12012317	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24923.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	7.52963062490418	7.70724843235258	7.29425355138097	7.88972915754504	8.19316959046357	7.74491299331267	0.624683796860045	0.0142803082072154	0.128471822392256
Merged-chr16-10965568-2	chr16	10965068	10966068	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27553.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.96282250696506	3.72068041287886	4.06761412920499	3.87010917832942	3.54072854732257	4.09076959162322	-0.236828096536001	0.672857005424313	0.910966428144718
Merged-chr9-44089456-4	chr9	44088952	44089952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198092, intron 3 of 12)	intron (NM_198092, intron 3 of 12)	4532.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	7.58829159823522	7.46495784307602	7.39870329613018	7.12056554793928	7.04023063731039	6.90374044254571	-0.6862346402555	0.003799807740405	0.0500343197882024
Merged-chr11-4222530-4	chr11	4222016	4223016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028022)	TTS (NM_028022)	4265.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	4.87894325643692	4.87277722659339	4.9892313388776	4.46932158192954	4.43660326929551	4.33758725284632	-1.17330418263205	0.00470869871599657	0.0587496480372834
Merged-chr11-79877772-2	chr11	79877272	79878272	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84615.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.63748504892147	6.68754879665815	6.77664774845361	6.31731915724868	6.44983202495178	6.28001163349894	-0.54660509108322	0.0388549796153177	0.244393263916996
Merged-chr3-75276719-4	chr3	75276176	75277176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6598.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	4.23002950089864	4.67555861887916	4.42304132215477	4.52462642619226	4.34366338910189	4.57372733874015	0.0436704595963505	0.923686892527342	0.982727549942016
Merged-chr1-156735868-4	chr1	156735357	156736357	+	913.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16947.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	3.07125662682125	2.93307829707513	3.1812534100404	2.67853924690487	2.792089561691	2.78441116366526	-1.5583184729051	0.0343537394240916	0.226919580058729
Merged-chr2-129504479-3	chr2	129503973	129504973	+	997.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	32129.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.1945403448602	3.2476798299749	3.09890471199706	3.53088430927151	3.02602453021899	3.2339059969545	0.389650873734191	0.55944770260061	0.864958249988122
Merged-chr8-33641890-4	chr8	33641359	33642359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178648, exon 1 of 8)	exon (NM_178648, exon 1 of 8)	117.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	6.60475553621049	6.38947041440505	6.86616930402396	6.92855665536587	6.84502149637658	6.68343336210133	0.318278195232882	0.249401644467726	0.646337575549666
Merged-chr6-113661698-4	chr6	113661223	113662223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23256.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	8.30286951090503	7.87669474140488	7.80192196470838	8.20505136845564	8.22787414176838	7.74143417848201	0.0915060266900838	0.731553232741019	0.931462022312867
Merged-chr15-64276488-4	chr15	64276007	64277007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	36166.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.95234937992124	4.81750461326514	5.18281311743596	5.20481196938345	4.78895688306756	5.33525941732247	0.285546085332645	0.481941020946973	0.82522727772513
Merged-chr8-22478886-4	chr8	22478371	22479371	+	705.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-1992.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	4.78582966610563	4.90049771062993	5.03649176766972	5.40581727406861	5.25442619791588	5.10158838144282	0.758937842264059	0.0407391843182774	0.251732218086679
Merged-chr5-139407273-6	chr5	139406761	139407761	+	947.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	874.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	6.90870000606367	7.12024438179141	7.4179844595715	7.00990182814431	7.17461688980565	7.22008400980585	-0.0319023344176997	0.903774017072138	0.977858102400597
Merged-chr14-103785323-4	chr14	103784864	103785864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58337.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.72396644308955	4.85863559212595	4.68572285530172	4.50460007541267	4.43040528696888	4.50389480098641	-0.690201971172203	0.09454902522783	0.409901281256566
Merged-chr14-73384812-3	chr14	73384333	73385333	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	CpG	456.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	8.5693389465669	8.75338549753482	8.45898822311282	8.67192642307736	8.84456177321211	8.70058782157502	0.192684209752199	0.359792648424682	0.746109076389308
Merged-chr13-58073444-4	chr13	58072941	58073941	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 5 of 16)	intron (NM_001195075, intron 5 of 16)	28987.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	5.22545654108603	5.48083629965857	5.3916819297846	4.14867087299725	4.14578013843846	4.73508038182368	-2.38307515376913	1.33593257266994e-07	9.22491929516355e-06
Merged-chr14-57424097-4	chr14	57423605	57424605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	34.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	7.43278230618955	7.78136473283241	7.23147801442674	7.2869224455518	7.41172806418759	7.08200688278882	-0.348480732635818	0.193158325680825	0.580302074097341
Merged-chr11-117878029-1	chr11	117877529	117878529	+	794.5	f0_balb.idr	Intergenic	Intergenic	-4503.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	5.19736355647669	5.20629720691579	5.07593668395521	5.03804148847338	4.78264391616034	4.53500121978749	-0.765545043006293	0.0557648535947087	0.30396868247026
Merged-chr12-16210744-3	chr12	16210241	16211241	+	914.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	379029.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.05946208858116	3.39532677971149	3.31052991718928	2.74962117257016	2.77367195385536	2.71596018600771	-2.64666419700539	0.000886002364681944	0.0163938783057205
Merged-chr6-146642525-4	chr6	146642037	146643037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-42.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	7.42884387804043	7.72364783524903	7.40203931236918	7.4822560612235	7.53958950731892	7.45912365542932	-0.0533046945918193	0.821316489902179	0.957949292007016
Merged-chr15-57892536-4	chr15	57892051	57893051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-133.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	8.26948060585864	8.37776906813133	7.87954379710904	7.96951005759763	8.24298415741668	7.7797484850512	-0.254215834358848	0.322021020116267	0.715384462470548
Merged-chr4-47318657-2	chr4	47318157	47319157	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-34565.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.61993546264479	4.43637877650598	4.75703859629624	4.52659124896913	4.63276906661383	4.37069819568478	-0.194658810318418	0.654032475131082	0.90364131093357
Merged-chr2-148536810-4	chr2	148536303	148537303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93268.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.68955837273707	3.45541681404153	3.39050100893024	3.50394821535716	3.35920962408384	3.67655293858476	-0.040082123331902	0.946370410375767	0.988000164444391
Merged-chr14-55601315-6	chr14	55600798	55601798	+	729.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194346, exon 16 of 21)	exon (NM_194346, exon 16 of 21)	-2687.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	4.89408298965833	4.72173087065805	5.26822864804736	5.27562255815184	5.37894363665054	5.33138043787536	0.757796220092454	0.0475338450493471	0.276188976485558
Merged-chr10-59702544-4	chr10	59702060	59703060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291443)	promoter-TSS (NM_001291443)	-3.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	5.438930981586	5.72264405202677	5.44276358725193	5.46489873500501	5.5881822421983	5.50605391881191	-0.0472338311015034	0.887375326048822	0.973836995667151
Merged-chr11-21006899-4	chr11	21006394	21007394	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.96801789363755	5.96227210091043	6.18117318538036	5.9697078581015	5.87991087962948	6.09689473550056	-0.0967772431078096	0.744220252749927	0.935908101256887
Merged-chr13-42101614-4	chr13	42101100	42102100	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49579.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	3.76931174795548	3.8361297305618	3.72279562087487	3.78479907354001	3.8573886449164	3.84474566016478	0.160494773632352	0.757230520122292	0.939819795914786
Merged-chr9-114843793-3	chr9	114843282	114844282	+	860.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027294, exon 1 of 4)	exon (NM_027294, exon 1 of 4)	370.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	6.3879612076637	6.60632301010287	6.25739679925302	5.65946521690524	5.3617734758848	5.49713957263982	-1.62414936751047	2.02618054946603e-07	1.32751520598401e-05
Merged-chr8-104534576-4	chr8	104534074	104535074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301164)	promoter-TSS (NM_001301164)	63.0	NM_144931	234664.0	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	7.23150635334234	7.42277158983071	7.09564937583116	7.42598997509262	6.92232772565483	6.86963188262873	-0.239578652020642	0.39303757086339	0.771429661681589
Merged-chr7-68795807-3	chr7	68795310	68796310	+	852.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46572.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	2.97769842235054	2.97775180573693	2.9550727916463	2.9532473730665	2.67386754857611	2.84396260164923	-0.722967817114658	0.311478054840034	0.706505996814131
Merged-chr1-37540585-2	chr1	37540085	37541085	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 1 of 15)	CpG	431.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	5.29805383818486	4.80143426802246	4.38542053278918	5.16131731024462	4.55191486084314	4.93462182604582	0.0345893836202433	0.944439070623348	0.987719484242428
Merged-chr16-35867983-2	chr16	35867483	35868483	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	3399.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	4.12491623218966	4.46051621259783	4.51643899559576	5.00844127581378	4.81625213145368	5.15625861863001	1.46736491787103	0.000794146314761373	0.0150831605931669
Merged-chr2-22746962-4	chr2	22746443	22747443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27384.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.73860742063219	6.43320461080067	6.47060166807078	6.54669836096774	6.75970888351686	6.63466145788409	0.151662439449359	0.576965394632737	0.8718765152026
Merged-chr3-28103838-3	chr3	28103361	28104361	+	661.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	RSINE1|SINE|B4	119690.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.25060280208741	3.22229911688753	2.99794509179231	3.14938073433863	3.49905330821081	3.42774649536373	0.814833469036053	0.21857340447029	0.61273880821229
Merged-chr6-145767655-2	chr6	145767155	145768155	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40728.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.20623523070334	4.30680046467602	4.17381606934793	4.18866195242351	4.18217762301706	3.88591946912245	-0.364557281503419	0.452878701309559	0.809457484278845
Merged-chr5-90907714-6	chr5	90907159	90908159	+	885.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3760.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	3.78636871070462	3.66912728900137	3.6648084966387	3.43819448551238	3.56279287966925	3.4010153711176	-0.830537779344615	0.146536633365691	0.510659638526298
Merged-chr15-81857882-3	chr15	81857378	81858378	+	998.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	CpG	448.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.68285000401847	7.398602148423	7.48869624208617	7.65371617822656	7.75701722019067	7.67061687651771	0.240927336363956	0.292104585111993	0.689330051945222
Merged-chr15-95885142-3	chr15	95884671	95885671	+	593.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-55099.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.0292651511269	4.02503195615973	4.35370061876841	4.44652391085205	4.26773375004187	3.89128006671574	0.252549729147473	0.62244010430545	0.891161426909556
Merged-chr4-147437273-2	chr4	147436773	147437773	+	986.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx3_Mus|LINE|L1	-116004.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.49899164556293	3.73312691444952	3.92908199245083	3.63043291804673	3.68790697501645	3.99660091888426	0.160642083245477	0.77667574292546	0.944890351789015
Merged-chr17-71082122-4	chr17	71081662	71082662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 17 of 36)	intron (NM_001083934, intron 17 of 36)	62605.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	7.34484684336384	7.32354616889095	7.23928665329492	7.21045098115516	7.52643911564818	7.10909012596617	-4.4075558746474e-05	0.999859172848452	0.999986127056153
Merged-chr2-159911866-2	chr2	159911370	159912370	+	934.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35471.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.40042621084681	4.61114494177067	4.55889931345857	4.45132592578059	4.35481278799604	4.50236278431475	-0.237398622121587	0.581803783171057	0.873452104072563
Merged-chr11-47199262-4	chr11	47198756	47199756	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	180046.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	3.14260196652609	3.23855050601841	3.01190632814924	3.16349091429428	2.9756662717081	3.14562579307774	-0.199625236610493	0.762480604804783	0.941561416958418
Merged-chr3-149102349-1	chr3	149101849	149102849	+	729.0	f0_balb.idr	Intergenic	Intergenic	-147714.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.68985038298056	2.87771755195597	3.15485633356763	2.59134562778601	2.96225574631204	2.94814928484757	-0.348024437195185	0.656416482485285	0.904654860421566
Merged-chr7-63903194-2	chr7	63902694	63903694	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-13663.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.93813823202775	5.58271603949238	5.89500488374357	5.72719083578253	5.31365289134386	5.78949625354061	-0.358713992270347	0.301938594878023	0.698637596357458
Merged-chr6-124479065-2	chr6	124478565	124479565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14048.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	4.59488671251756	4.34578084960271	4.36053670538206	4.38178759499608	4.27363651979935	4.24416314256353	-0.366075095865803	0.415397010320292	0.786411413240144
Merged-chr13-64275806-4	chr13	64275272	64276272	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172587)	promoter-TSS (NM_172587)	-784.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	5.77269479374501	6.06225158430686	5.45958967539357	5.4529064899177	5.20015148726963	5.0718624619932	-1.02947499901721	0.00526371179959892	0.0634390109242507
Merged-chr11-74836833-2	chr11	74836333	74837333	+	918.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 2 of 6)	exon (NM_010813, exon 2 of 6)	5909.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	5.9382372826824	5.62748721895804	6.03426639686893	5.93690636787532	5.76524486806069	5.89066333544069	-0.0128790074574226	0.967577212923194	0.992574844153271
Merged-chr14-64698957-2	chr14	64698457	64699457	+	893.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	46426.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.00181511669747	2.9219426318917	3.21178091726134	3.12158488698773	2.77998026759401	2.99756787070183	-0.344481545360617	0.623875365100488	0.891703679044961
Merged-chr15-78574442-4	chr15	78573930	78574930	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155437)	TTS (NR_155437)	-1647.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	5.40584352908353	5.26670826454927	5.20940679361446	5.73497331455416	5.64702639858147	5.46841991401757	0.623744205186656	0.0635438934721398	0.328508277964565
Merged-chr16-10979591-4	chr16	10979101	10980101	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	MLT-int|LTR|ERVL-MaLR	13520.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	6.05282414698058	5.74360179767883	6.20647834420493	5.84606533659958	5.98525724417283	5.796404926549	-0.211853551437721	0.504511687065151	0.837745129860649
Merged-chr9-111149504-2	chr9	111149004	111150004	+	589.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	31393.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	3.2049597526448	2.86325828784735	3.07990050465893	3.07326401557973	2.97729434855672	3.09357111409695	-0.0478247887648113	0.943912413815629	0.987495247303971
Merged-chr10-62430634-4	chr10	62430139	62431139	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8182.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	3.8652270388734	3.94297659108829	3.66353179455139	3.96657432113049	4.00254183167486	3.79151374240648	0.285850733339419	0.587519269401568	0.875973039140726
Merged-chr14-55561421-2	chr14	55560921	55561921	+	989.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_133734, exon 2 of 15)	exon (NM_133734, exon 2 of 15)	498.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	4.87365659827337	5.0729055056025	5.47701388588285	5.37039139971016	5.20894838756138	5.31085402144158	0.293363064572011	0.444408898889329	0.804174926794322
Merged-chr6-113698069-4	chr6	113697476	113698476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033463, exon 2 of 8)	exon (NM_001033463, exon 2 of 8)	926.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	7.78020552188542	7.78562884025481	7.52853600033553	7.43957415736939	7.30024217765622	7.46341289397636	-0.455585926553386	0.0483805121769141	0.278960856492007
Merged-chr6-145187626-4	chr6	145187078	145188078	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177222, intron 9 of 15)	MTEa|LTR|ERVL-MaLR	23392.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	6.25938221957438	6.17054931542308	5.14266809871628	5.61453375813677	5.58626686144652	5.36121686731729	-0.769902763175047	0.0681831107046194	0.341651895496422
Merged-chr7-97136624-4	chr7	97136133	97137133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	54882.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.84113358192062	6.99681541388592	6.82260379390368	6.88004887986184	7.08929253661769	7.03542379072455	0.173813230943936	0.483991382339806	0.826650962533214
Merged-chr16-21423156-4	chr16	21422656	21423656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285894)	promoter-TSS (NM_001285894)	38.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	6.91100575430231	7.09217053581566	6.79107158893754	6.83697710804891	6.85878960043105	6.44694984553887	-0.315923369018869	0.248712287503093	0.645819769301048
Merged-chr16-91398277-4	chr16	91397767	91398767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7968.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.49514791419076	8.36650069178832	7.9280008895915	8.23226891024636	8.67394552461445	8.05499209940799	0.0890968141047223	0.746664731573362	0.936300236930265
Merged-chr2-13576042-4	chr2	13575552	13576552	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 2 of 8)	intron (NM_011701, intron 2 of 8)	1741.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	4.73900277678821	4.76151407086653	4.47801666862222	4.53203503462755	4.42859141117401	4.74903791729835	-0.26011322710138	0.543243442126539	0.857545957833401
Merged-chr17-8303245-2	chr17	8302745	8303745	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073374, intron 1 of 4)	intron (NR_073374, intron 1 of 4)	-7843.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	2.05458407656056	2.0976620589978	2.03660838072171	2.22944629887956	2.06122276130336	2.30971233490087	1.01473144874597	0.264988086532289	1
Merged-chr6-51612683-6	chr6	51612159	51613159	+	802.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	67366.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.88498855450612	4.78553211948029	5.00911053934149	4.91410380459648	4.69736978370345	5.19766583146929	0.107367977815037	0.790888624026307	0.949655261093279
Merged-chr18-54846630-4	chr18	54846122	54847122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143558.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.8944568315023	7.02309887631988	6.6813462121616	6.95911998729864	7.18920682887034	7.22617603630262	0.375046447987171	0.146253122758148	0.510127279594495
Merged-chr7-88315089-1	chr7	88314589	88315589	+	1000.0	f0_balb.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	37004.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.64363167100614	4.16761156693751	4.45650721785904	4.30849324146232	4.58454165853606	4.52344098639317	0.105792602920541	0.819480210206275	0.957283576025177
Merged-chr4-83315525-4	chr4	83314984	83315984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	8705.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	8.51990468440871	8.70302435823595	8.31232111444599	8.62523411617467	8.88565594522162	8.5034499547379	0.221091777551748	0.341386900970541	0.730816878642537
Merged-chr2-119360053-3	chr2	119359541	119360541	+	727.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8799.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	4.26056900252986	4.63502312230978	4.66778597651281	3.71048004766281	3.5097222016246	4.02949295856211	-2.35377853902918	2.29895794199233e-05	0.000824177907959061
Merged-chr7-88117209-3	chr7	88116723	88117723	+	957.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-160862.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.81988968004167	3.94943641584757	3.72130350981784	3.53609531028754	3.36903466177059	3.98507790295111	-0.626244353706327	0.29269644597312	0.689884050296819
Merged-chr2-34799826-4	chr2	34799298	34800298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145522, exon 1 of 8)	5' UTR (NM_145522, exon 1 of 8)	114.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	7.26699311126057	7.37680068498503	7.10225722693307	6.99147689786794	7.34197620263759	7.20993466380768	-0.0989886032683342	0.693595112971648	0.918960880648635
Merged-chr10-120882546-4	chr10	120882051	120883051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	16420.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	4.58232526757678	4.59847082392267	4.44616925926261	4.33144881415827	4.34369582878352	4.28791173438858	-0.576846614169426	0.184238694726955	0.567869251150334
Merged-chr11-82871251-4	chr11	82870738	82871738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164571)	promoter-TSS (NM_001164571)	-28.0	NM_001164571	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	7.68751790452873	7.76345591396165	7.65751400872831	7.53705205581137	7.72615850624586	7.58256016893566	-0.121425238546508	0.583297886380933	0.87400013033251
Merged-chr3-137948317-4	chr3	137947781	137948781	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	B4A|SINE|B4	29726.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	6.36411971638768	6.14384273157395	6.4115910982562	6.08549171735637	6.4375198348175	6.50588905256828	0.078594967493238	0.789669203829719	0.949286954249148
Merged-chr9-94433640-4	chr9	94433133	94434133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	104448.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.80435992779766	5.7358237332792	5.80431340804193	5.98947064912093	6.39895490836378	5.7874231820373	0.560260398483767	0.0877663012284776	0.393049429096834
Merged-chr3-89863876-4	chr3	89863386	89864386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32516.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	6.32748939276996	6.47141190281219	6.55514673926286	6.51788340275002	6.47761432629119	6.4379464012038	0.0487563745300045	0.854679938186505	0.965987623019113
Merged-chr5-96209471-2	chr5	96208971	96209971	+	935.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-644.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	6.63190573844859	6.48139977678776	6.25006683224689	6.65113698745497	6.64726378675809	6.61399679708223	0.26210442617167	0.334039419781838	0.724748007849347
Merged-chr2-90547509-4	chr2	90547002	90548002	+	790.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	33145.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.99692937562768	4.92692626725646	4.7949872231882	5.27098327666676	5.28179160053585	5.54523173498652	0.927275117861962	0.0122021321993537	0.115560552702461
Merged-chr4-95192214-4	chr4	95191711	95192711	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-139989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.03203052149741	5.24477093766589	5.68446833574532	5.13454022417828	5.07067949748455	5.29271827539759	-0.350083653455285	0.368613676398686	0.753565102102645
Merged-chr18-23813578-4	chr18	23813092	23814092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	L1ME1|LINE|L1	9622.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.20771391467645	6.94494855595865	6.51538351116132	6.90844165546371	6.95361381575666	6.28306226442639	-0.259962873297641	0.431660679734723	0.797026063132057
Merged-chr7-19405601-4	chr7	19405106	19406106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1502.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	3.48095376426982	3.3669165663291	3.29666912977638	3.36021314460996	3.09702783285842	3.31111663626401	-0.524773568714272	0.400048315092423	0.776360206227502
Merged-chr6-5110582-4	chr6	5110082	5111082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	83364.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.1933457477533	4.40320900993951	4.23640138783802	4.43368939681647	4.3241193754741	4.30480117334517	0.189376338070166	0.675175717152741	0.912043524199016
Merged-chr7-99104527-1	chr7	99104027	99105027	+	546.0	f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	36617.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.33332917396073	3.38948650996006	3.51351480513869	3.46213565597241	3.45163040528664	3.58344981933854	0.327252724446153	0.572820044333967	0.869934493236159
Merged-chr6-89297454-4	chr6	89296933	89297933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11708.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.84039002989784	4.73443940661561	4.28938345172834	4.20967177484194	4.25531645942309	4.04970970379206	-1.21111662601213	0.0117591280634729	0.11259534268187
Merged-chr14-55558162-2	chr14	55557662	55558662	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1867.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	6.31144556859219	6.53854250895899	6.53017834185436	6.38571651578663	6.5478242062753	6.35112444362554	-0.0384715895835596	0.888235821601481	0.97401529899353
Merged-chr9-37656155-1	chr9	37655655	37656655	+	646.0	f0_balb.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	1157.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	3.99109101736903	4.24078834677813	4.18271336185327	4.09169883351576	4.01347669389778	4.11249226859953	-0.207770862782509	0.66620949975524	0.908049448139768
Merged-chr11-75644921-4	chr11	75644429	75645429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 7 of 11)	MIRc|SINE|MIR	-6580.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	4.35326710248645	4.4496311156336	4.22559977110318	4.03727836556985	4.22759076549831	4.10197510637086	-0.604255973343339	0.197988046888676	0.586124076049133
Merged-chr1-134955335-2	chr1	134954835	134955835	+	979.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 1 of 23)	intron (NM_001081307, intron 1 of 23)	605.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	5.06092249000548	5.23537127107818	4.66970501378595	5.1368695819471	4.92765194506825	4.50460245662259	-0.276972706263439	0.535335406966069	0.853511885485043
Merged-chr12-102380788-2	chr12	102380288	102381288	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MTE2a|LTR|ERVL-MaLR	59025.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.50296860393207	5.8401075209174	5.97277491194113	5.7717080681562	6.00238867092145	5.31491316723541	-0.070714556074067	0.848106674561135	0.964318271116593
Merged-chr1-157008277-4	chr1	157007737	157008737	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68611.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	7.21935961185502	6.86670392246259	6.41971561144423	6.10618972547993	6.60782470879544	6.46063129802307	-0.746452789865165	0.0237739558324426	0.181052838816208
Merged-chr12-51693563-2	chr12	51693063	51694063	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-1649.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	5.53179754965675	6.15209585497717	5.85210223695719	6.19318307619568	6.06479885341497	6.01015947959567	0.376305474092614	0.256432322167988	0.653552886970565
Merged-chr17-35968642-2	chr17	35968142	35969142	+	767.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_013854, intron 1 of 22)	B1_Mus1|SINE|Alu	1108.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	4.65149068879867	4.29225549315655	4.45041916016268	4.26211931463286	4.02930589264371	4.55717378045027	-0.482944940424099	0.316893037168495	0.710824527206257
Merged-chr5-3504901-2	chr5	3504401	3505401	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38932.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.87047796416804	3.70540602679065	3.7794039303989	3.78878901040647	3.80725536724399	3.89886039200432	0.13692065495372	0.792492570846559	0.949977808464961
Merged-chr17-80139067-4	chr17	80138618	80139618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	intron (NM_176963, intron 2 of 6)	11647.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	5.10294524279141	5.05663304946032	4.96615151953889	4.69055501140389	4.45973100006734	4.77210697441955	-0.934914854145124	0.0186116738250036	0.154170249440607
Merged-chr5-146732357-2	chr5	146731857	146732857	+	867.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	62599.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.65331623093522	2.5085797478033	2.81776436288831	2.68495933590662	2.70848919625586	3.00433749703572	0.745696789907696	0.330310034961738	0.72184996425729
Merged-chr17-84430977-2	chr17	84430477	84431477	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 17 of 37)	ID_B1|SINE|B4	35231.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	2.39668059482742	2.40374388772912	2.46834150698644	2.66702019382728	2.65975712543711	2.67104845040493	1.49291714192189	0.0599599061498457	1
Merged-chr7-126649503-4	chr7	126648969	126649969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029339, exon 1 of 10)	5' UTR (NM_029339, exon 1 of 10)	160.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	7.04981420991849	7.2188218387657	7.11940575880717	6.9863294848985	7.26230135385579	7.10107519113387	-0.00846413209912141	0.972424639435459	0.993868590220018
Merged-chr12-78228418-1	chr12	78227918	78228918	+	568.0	f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	intron (NM_172952, intron 1 of 23)	1763.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	3.47864157366482	3.51999010019622	3.52082393746111	3.40007957515764	3.868024253107	3.42175453286389	0.31163298971229	0.607160109247644	0.884448083779426
Merged-chr14-55577994-2	chr14	55577498	55578498	+	737.583374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-496.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	5.88061860277253	6.17251297570101	6.36298376029953	6.43551219728922	6.59244094830664	6.06904772067533	0.414397121023514	0.191553987715899	0.578163985386394
Merged-chr18-32407483-4	chr18	32406930	32407930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29146.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.73588227528705	5.56993146858125	5.86450795753758	6.03605686782238	5.80270443719746	6.0172262102324	0.410229229829083	0.189464152101179	0.575341526514905
Merged-chr7-105762242-4	chr7	105761779	105762779	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10044.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	4.32425764625096	3.84126106656614	3.54634303831836	4.37833909774331	4.35703360899487	3.9279997062081	0.857145697738584	0.464172282197333	0.816188315062566
Merged-chr11-83463033-3	chr11	83462520	83463520	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172797)	promoter-TSS (NM_172797)	20.0	NM_172797	118453.0	Mm.264648	NM_080453	ENSMUSG00000020682	Mmp28	D130023P12	matrix metallopeptidase 28 (epilysin)	protein-coding	2.51617020233531	2.51098109642217	2.67010457147673	2.67848780244964	2.34164065983422	2.62001047698609	-0.0759066579589243	0.924965371814683	1
Merged-chr1-87873219-4	chr1	87872730	87873730	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	intron (NM_177646, intron 1 of 29)	-18931.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	2.96685266899292	2.79984781664389	3.02516957412654	2.91207467263056	2.63143214411062	2.73269423806724	-0.858346281957247	0.245232318937687	0.642381314494918
Merged-chr19-10295377-4	chr19	10294860	10295860	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	9517.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	7.19263328025589	7.30284861069804	7.38123846147425	6.92393842941153	7.40684558019574	7.00639242450866	-0.224694102958669	0.395955457179144	0.773231268695054
Merged-chr4-156087575-4	chr4	156087082	156088082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22416.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	3.53340855773168	3.15881154841071	3.18150018237483	3.47491899500433	3.22651471686408	3.37313301632944	0.203113290771178	0.751776334758855	0.937992851334025
Merged-chr2-92484743-4	chr2	92484244	92485244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24226.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	6.59446139158512	6.58118034615553	7.24823076449024	6.95831200344948	7.04299749197423	7.38806219805702	0.459503576540051	0.138467990743106	0.497265626834372
Merged-chr7-80767949-2	chr7	80767449	80768449	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 3 of 37)	intron (NM_016721, intron 3 of 37)	35382.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.82382265589384	3.82226551365746	4.04798852735276	3.8512428909648	3.47002272251636	4.07107503006151	-0.269832781689919	0.634760043513869	0.896354115104213
Merged-chr5-115488315-4	chr5	115487807	115488807	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3823.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	6.96254419000465	6.91940902619784	6.82167176909036	6.93203127126287	7.13799402918317	6.88017588775893	0.137730693925546	0.581058164785289	0.873228285171611
Merged-chr16-91741124-3	chr16	91740649	91741649	+	650.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11778.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.40053120768041	5.50477650663683	5.53904780380319	5.45358223438034	5.02130695286517	5.40171438974255	-0.362036797775654	0.310610075271251	0.705980582457052
Merged-chr8-3320502-2	chr8	3320002	3321002	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-32913.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	2.41322670342134	2.5270609812099	2.45966396667972	2.68405518435773	2.76311501977101	2.84967892057433	1.73933567654303	0.0295752046387833	1
Merged-chr3-89246420-4	chr3	89245904	89246904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025327)	promoter-TSS (NM_025327)	-34.0	NM_025327	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	5.70318821088518	5.50579895267712	5.62490780954997	5.72907995432216	5.41579204614256	5.66019740950777	-0.0220639313886304	0.946662737770367	0.988007649185823
Merged-chr14-70403163-3	chr14	70402657	70403657	+	691.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	intron (NM_021308, intron 10 of 22)	25937.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	5.36085777544722	5.0112904481259	4.7635841629235	5.05629931781395	5.01723728724478	4.83148612154698	-0.219605069168916	0.589208428525439	0.87677329959816
Merged-chr19-18646608-2	chr19	18646109	18647109	+	888.166626	f0_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 8 of 8)	B3A|SINE|B2	14593.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	6.64385971050254	6.74765526057763	6.37744301503271	5.95491671749951	5.92704817442239	5.54615698462694	-1.28916140248682	3.51127248451039e-05	0.00117666516669811
Merged-chr19-6920466-2	chr19	6919966	6920966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	1342.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	4.12838736140548	3.819420015679	4.26054459534919	4.33421390369969	3.73627843538072	3.9042601323471	-0.173468666430824	0.753598716862409	0.938563718495545
Merged-chr16-19979987-4	chr16	19979502	19980502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	3047.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.79527795746866	5.04067469201661	5.3467812233248	5.2939925201285	5.38674337816515	5.22612797011075	0.494188283689103	0.193079599591121	0.580267363879138
Merged-chr2-27412585-2	chr2	27412085	27413085	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15023.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.13430842759034	6.1200069035814	6.22182434666032	6.43672497287949	6.31632375547089	6.47105561809028	0.414166481564407	0.13023016248605	0.48248257376114
Merged-chr5-92487451-4	chr5	92486956	92487956	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	18201.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.44336300723175	7.67025599704433	7.33833305329836	7.41424927328998	7.77701750455715	7.42882257095795	0.090324167776515	0.720407314343994	0.928155640080294
Merged-chr16-91008570-2	chr16	91008070	91009070	+	827.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	B4A|SINE|B4	2525.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	3.10529948710931	2.96454007816555	3.09689156064877	3.2648855941695	3.14146931518564	3.28390003186363	0.752637782811874	0.243230673278437	0.640466388042791
Merged-chr6-87205681-3	chr6	87205203	87206203	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	100957.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	2.80929722239523	2.76346618280246	3.03830416737557	2.69373544821626	2.78695241292428	2.69328924492734	-0.730959450908093	0.321687079096628	0.715100811559196
Merged-chr6-39379469-4	chr6	39378955	39379955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NR_155077	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	6.13951340708102	6.04771051581378	5.51756077825864	5.85830360825813	5.6480560896732	5.93529507480355	-0.231400491422611	0.498300865199444	0.833856267944725
Merged-chr11-21011014-1	chr11	21010514	21011514	+	704.0	f0_balb.idr	Intergenic	Intergenic	-80310.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.82559886077123	4.79520635953679	5.23891289679351	4.94983403243241	4.68954995868778	5.11952281211007	-0.0798700526312395	0.847088132277463	0.96415075979756
Merged-chr12-29696853-4	chr12	29696373	29697373	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-10428.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	4.54556196673465	4.69674396762505	4.2264289489901	4.69038089934355	4.29189087436689	4.69183187669779	0.122725362554651	0.79316989790609	0.950282657772673
Merged-chr2-62643520-4	chr2	62643015	62644015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	2740.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	5.46129854027882	5.75860298424913	5.22368907669056	5.65288746707185	5.61419291032064	5.57464635386853	0.188702952295297	0.587821152896677	0.876090509043824
Merged-chr3-81149343-4	chr3	81148843	81149843	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	112927.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.57759138228727	4.2363497703757	4.07672084313401	4.02092210238073	3.96524290493182	4.04623880601183	-0.883127872740398	0.0755573518583079	0.361882008485931
Merged-chr4-149990482-4	chr4	149989949	149990949	+	764.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	12787.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	3.18406488246466	3.04593074626521	3.16886215469644	2.91845406443084	2.79316919084059	3.0092938556845	-1.09109433059267	0.112454116480911	0.447943038160931
Merged-chr2-160647767-4	chr2	160647343	160648343	+	849.5089109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	1946.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.86705892737348	6.15988921293104	6.12490626729679	6.07566063248099	6.28672871804548	6.43513106762727	0.363093975611116	0.225219875111557	0.620063864646258
Merged-chr11-8634864-4	chr11	8634352	8635352	+	899.8833619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	29683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.70633165056394	4.57438489733326	4.57261056377153	4.16136756884266	3.97245976936787	4.63853208906555	-0.888961696226844	0.067646379683687	0.340276998077273
Merged-chr19-12457547-4	chr19	12457035	12458035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3244.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	7.55102708806506	7.68310288894728	7.38804841504482	7.7224971826706	7.94863656426717	7.45619541676055	0.264155219946938	0.293551757238993	0.690385941671627
Merged-chr3-79841800-2	chr3	79841262	79842262	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	900.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	4.17162284701776	4.26657011781614	4.11845570574496	4.54218487003882	4.69218247734515	4.38100314348199	0.94058213668476	0.0377451795083304	0.240206569524218
Merged-chr18-12188823-4	chr18	12188311	12189311	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008720)	TTS (NM_008720)	20081.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	4.06227249282597	4.12719298664591	4.74376746051613	4.12827220020958	4.2814653178207	4.27319695781211	-0.285288486737921	0.577391273212995	0.872117086580778
Merged-chr12-102456237-1	chr12	102455737	102456737	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-12897.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	7.99299390116021	7.89014271297598	7.69739131347229	7.76263620522432	8.24120683764957	7.77188089482258	0.119840672089271	0.636735950557549	0.89723915288953
Merged-chr11-106382010-2	chr11	106381515	106382515	+	694.791626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010494, intron 1 of 3)	intron (NM_010494, intron 1 of 3)	766.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	4.37374473803347	4.169903090805	4.20210790905422	4.48112134375692	4.46477500973496	3.90289044771194	0.176329641601747	0.727625681222315	0.930204882969987
Merged-chr12-72334271-3	chr12	72333758	72334758	+	658.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	74796.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.35080466169273	3.20068032196824	3.20714599669313	3.88950299828179	3.66430945035694	3.88744675596316	2.07624163431935	0.000739832913303961	0.014269823145618
Merged-chr17-56272680-2	chr17	56272180	56273180	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	4087.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	3.3402678254315	3.17566124944362	3.34055294947986	3.55350333242443	3.36411364118459	3.04849329778549	0.229275392812519	0.727733424935425	0.930210012156297
Merged-chr9-66277898-4	chr9	66277387	66278387	+	882.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72563.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.05088066994926	3.70292052616341	3.77997616850427	4.20380765850287	3.92637473713554	3.62320652066025	0.267651001278247	0.636371211051102	0.897112627560655
Merged-chr13-113609514-3	chr13	113609011	113610011	+	767.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	L2a|LINE|L2	9053.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.07643775235151	3.74175258893841	4.22640627824342	3.94388314761828	3.99191716055762	3.92567025264564	-0.198446742011007	0.703482628195617	0.922108924938678
Merged-chr11-21288319-3	chr11	21287815	21288815	+	999.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 7 of 22)	B2_Mm1t|SINE|B2	49283.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	2.85319419835607	2.52332940410493	2.90477983829115	2.50825889639914	2.65823835317917	2.74089352215282	-0.699456413231171	0.375667337615707	0.758886327466078
Merged-chr5-101961435-2	chr5	101960935	101961935	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	108486.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.58890074788369	3.47051948986566	3.97247431730027	3.62770722044229	3.80238652513788	3.99524925049333	0.417184829446644	0.468744965907332	0.818701612865445
Merged-chr3-60503419-2	chr3	60502919	60503919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	2240.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.10886303281026	5.56227127881711	5.46448601182476	5.53240903492672	5.27172944454179	5.46964421712248	0.0617644675355111	0.864177633637322	0.968269312109804
Merged-chr17-26231572-2	chr17	26231097	26232097	+	688.0	f0_balb.idr|f1_balb.idr	intron (NM_001206335, intron 1 of 12)	B4A|SINE|B4	12645.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.46592638589373	7.36597191698632	7.37089061406352	7.46713983168974	7.88335466402752	7.31430621353963	0.273868236884931	0.291983223301408	0.689249057972242
Merged-chr2-148878883-4	chr2	148878406	148879406	+	712.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3394.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	3.10581894707222	2.86769104489624	3.2364990053711	3.37754863934083	3.01611238371251	3.01316249857468	0.316616568488447	0.649443844355233	0.902160587683553
Merged-chr11-106562959-4	chr11	106562447	106563447	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	49983.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.14786691279043	6.33327166806598	6.4777051804434	5.98829551203843	6.04398728446897	6.20363011600466	-0.410403416717285	0.157516025187372	0.528875531587073
Merged-chr13-64040070-3	chr13	64039554	64040554	+	742.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49147.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	4.33889465526051	3.9536746709505	4.41064559097746	3.81575600888343	3.60058217602238	4.00268731091451	-1.31916106725596	0.014616672079144	0.13027249896759
Merged-chr7-25130809-2	chr7	25130309	25131309	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	1651.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	5.13722250751049	5.26746188004017	5.58612840799791	5.76620683576283	5.93975495009942	5.80286090773186	0.963308275613226	0.00422330680223832	0.0541551721992057
Merged-chr4-142074299-4	chr4	142073847	142074847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	-9951.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	5.94246634839265	6.15817868454847	6.22114920202268	6.3150513098313	6.49110104257304	6.28133200639039	0.443170424614646	0.121177561358967	0.465574295865399
Merged-chr7-114301692-3	chr7	114301187	114302187	+	962.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-25571.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	3.82545653707843	3.79333833817124	3.75433587317249	3.47713644579958	3.50916817214824	3.87241613234944	-0.577724466156742	0.302773032215466	0.699382001681875
Merged-chr19-11045181-4	chr19	11044684	11045684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5382.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.32162350258277	5.19551875017351	5.11947063494932	5.02375130031634	4.8016548207433	5.53635080765448	-0.152334831131097	0.708853905862867	0.923778223606281
Merged-chr17-87265960-4	chr17	87265469	87266469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139295)	promoter-TSS (NM_139295)	-22.0	NM_139295	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	7.69828120223869	7.81665706605743	7.43651586393905	7.44735926335958	7.45547797374557	7.23024750839468	-0.411286812203555	0.090140478388846	0.399212738225415
Merged-chr7-44405066-2	chr7	44404566	44405566	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	20940.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	4.37391425276579	4.70703892877749	4.9219237371367	4.61927083312213	5.02632796577163	4.95195663233145	0.460074641375616	0.2935692410757	0.690407546746188
Merged-chr9-25289375-4	chr9	25288877	25289877	+	828.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 5 of 12)	intron (NM_001359738, intron 5 of 12)	36485.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	4.72553120922939	4.84932356818125	4.45902535137851	4.99232599566814	5.05746442789885	5.24385456086246	0.871569428454439	0.0322185123935599	0.218077678125639
Merged-chr7-114356651-4	chr7	114356139	114357139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029438, intron 3 of 4)	intron (NR_029438, intron 3 of 4)	58522.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	3.84671077764948	3.92363246643527	3.45526033643458	3.45865772452362	3.71847602841786	3.64365018284878	-0.506655185428578	0.39034686948577	0.769585097056154
Merged-chr6-134065283-4	chr6	134064785	134065785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	29585.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	7.23009859685735	7.19424650991326	7.05316907945892	7.06637145861265	7.20253544795901	7.3700207743798	0.0729055980429502	0.764074702252379	0.941939193804313
Merged-chr17-50576217-4	chr17	50575713	50576713	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	66666.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.72311013412592	5.93832307809446	5.65496110022889	5.17153449988672	5.14377611882097	5.12849469906116	-1.22727373202681	0.000281757343464299	0.00660779736047841
Merged-chr2-24919630-4	chr2	24919121	24920121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172545)	promoter-TSS (NM_172545)	-12.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	6.34090737574005	6.03081044814733	6.13622695432593	6.30621134908859	6.0088567411587	6.27891117605099	0.0335150666357775	0.910507569166631	0.979856358918468
Merged-chr4-9115568-2	chr4	9115068	9116068	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153725.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.87319499102826	5.07408051779226	5.19909956899739	5.02102174645097	5.06038298660396	4.92271787354177	-0.0867282853395654	0.817995679352204	0.956835450074313
Merged-chr2-12382812-4	chr2	12382309	12383309	+	973.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 8 of 13)	intron (NM_001355537, intron 8 of 13)	36651.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	2.70023862206986	2.88861430131664	2.97081382784212	2.63588733395863	2.82401013370879	2.6831331347455	-0.698566469302745	0.352804397169753	0.740329823404675
Merged-chr12-102455089-2	chr12	102454586	102455586	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-14048.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	7.3364439560786	7.3851005953792	7.34895422529174	7.54524527202868	7.84584395857363	7.40618847040688	0.38771703031786	0.111327470886098	0.445743594597859
Merged-chr3-109353207-1	chr3	109352707	109353707	+	605.0	f0_balb.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12524.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.77943205297448	3.70524122107566	4.08463224245124	3.4931219447565	3.43415901652262	3.5223829188719	-1.31329313081336	0.021892315859018	0.171515162154549
Merged-chr11-101627870-4	chr11	101627335	101628335	+	948.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-114.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	5.57791946542734	5.34589532817891	5.6813978460765	5.70844738953843	5.62233474944799	6.06275602384157	0.489488328034872	0.150985830932251	0.5182047532504
Merged-chr12-4595278-4	chr12	4594801	4595801	+	900.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	2293.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	5.18796617749074	5.43440958765816	5.48041879018683	5.17812895875877	5.40878748175126	5.27359092524761	-0.144437432537481	0.682154686923054	0.914979079382502
Merged-chr14-120910519-2	chr14	120910027	120911027	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-667.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	6.7608142403086	6.49548066950899	6.0429594066973	6.75166242060616	6.38646910485539	6.22270497549096	-0.000823581351932165	0.998021264952045	0.999579683478894
Merged-chr17-33843201-4	chr17	33842704	33843704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305169)	promoter-TSS (NM_001305169)	113.0	NM_019421	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	5.18776539034089	5.2763115023472	5.48357643354499	4.93054447198147	5.40152801582547	5.11688724598675	-0.278835182484235	0.462730517662698	0.815421548245998
Merged-chr14-70289488-4	chr14	70288986	70289986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	11.0	NM_001360229	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	5.34330572871482	5.31580520895362	5.33392168117542	5.62830773228378	4.95140431165506	5.02150458093389	-0.1783131787404	0.653018849920087	0.903077922885099
Merged-chr4-150117509-3	chr4	150117015	150118015	+	921.744446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1829.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	3.00903513751332	3.04956126880101	3.11942234242074	3.82052822173382	3.7530625527699	3.81382713847538	3.16420784119072	4.45151173772849e-06	0.000200325250769558
Merged-chr7-122087750-4	chr7	122087248	122088248	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14100.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	5.80637372926363	5.92724632096238	5.85576260688927	5.84140192016058	5.92272329262785	5.56393986394144	-0.119575702054553	0.703147912761825	0.922108924938678
Merged-chr4-9115261-2	chr4	9114761	9115761	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154032.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.1123806289927	4.2225092660632	4.2055639671684	4.03937801097058	4.04892348106515	3.82691409304391	-0.569383112237579	0.246828806479756	0.643949687388461
Merged-chr5-64503666-4	chr5	64503165	64504165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	26657.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	4.61387626067659	4.46754711901015	4.64279996520403	4.78757232920795	4.70095367108105	4.45457103000894	0.217044896561354	0.60701202578186	0.884418509188691
Merged-chr8-111596004-4	chr8	111595500	111596500	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	34322.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	3.5802383741915	3.46590632653767	3.38006878870923	3.36041902103926	3.3663564754489	3.39475770307569	-0.41485892973358	0.481261595962317	0.825002881741125
Merged-chr16-94526584-4	chr16	94526078	94527078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	51.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	8.465406069313	8.57266883788518	8.25054544682821	8.44391078531278	8.4456722539782	8.13660809896669	-0.119514502834405	0.596988534947705	0.88011264230803
Merged-chr16-22109573-2	chr16	22109073	22110073	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	MLTR14|LTR|ERV1	53726.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	3.26608139173921	3.43444246722379	3.39767377074775	3.56508525569958	3.66733341597161	3.35340915844692	0.653013395679612	0.275391563905397	0.672917218000561
Merged-chr19-44389783-3	chr19	44389285	44390285	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17924.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	6.26515727705647	5.70194652968048	5.82737464979789	6.64265105007284	6.12099313437881	5.59916767994687	0.404952573183577	0.306409192284122	0.702612397596307
Merged-chr4-128730648-2	chr4	128730148	128731148	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	3077.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.08995176451515	3.8960730589034	4.27410240157976	3.9562781264481	4.15502841333557	4.29853945941254	0.150675989149762	0.762618530591812	0.941636805613431
Merged-chr12-40485463-1	chr12	40484963	40485963	+	699.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	39410.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.86670406899435	5.03867102583115	4.75214989712059	4.5731336048295	4.6741972369531	4.81813579647227	-0.483848654283388	0.229122145635254	0.62459659003044
Merged-chr1-74339324-4	chr1	74338846	74339846	+	708.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019999, intron 1 of 8)	intron (NM_019999, intron 1 of 8)	6736.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	2.53936726863552	2.40122939961208	2.48855042722027	2.09625084720044	2.10076078013888	2.43707069902863	-1.89097480569893	0.0491822989674225	1
Merged-chr1-51474989-2	chr1	51474484	51475484	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	L1_Mus1|LINE|L1	3415.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	3.06594250370344	3.08650211818565	3.31246877627221	3.43262725463877	3.43686406823816	3.27023895408844	0.963111873265006	0.126436935307667	0.475355519288444
Merged-chr8-57800024-4	chr8	57799521	57800521	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-146966.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	4.59460200888494	4.58438705486309	4.52280547742628	5.01967834171109	5.23229391099033	4.98409412253079	1.20041434009914	0.00238867943700963	0.0354038543987705
Merged-chr14-66872281-2	chr14	66871781	66872781	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	3431.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	5.96935834904961	6.13062139282956	6.56721399952264	6.17538246658043	6.59118997524578	6.57792108210218	0.372564454553818	0.246091759164843	0.643210051835899
Merged-chr10-89442133-3	chr10	89441591	89442591	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1876.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	3.507015065196	3.75007565101771	3.37963266749411	3.23036099264238	3.34353873380682	3.33515985237639	-0.979420143203617	0.110873217086486	0.444841551070303
Merged-chr12-3873028-4	chr12	3872520	3873520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 5 of 22)	intron (NM_007872, intron 5 of 22)	-10776.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	7.9697935809701	8.1243121557326	7.96889995842451	8.07417151906287	8.25708654150082	8.18002117805277	0.210528473616516	0.322411796731209	0.715889842636581
Merged-chr18-6515429-2	chr18	6514933	6515933	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	675.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	6.70903303882708	7.27451687945695	6.76569650761184	7.12666219648115	7.14635109857786	7.23156806457526	0.325241929052908	0.245514332981313	0.642641425012514
Merged-chr7-80789263-4	chr7	80788762	80789762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14069.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.40630707818694	6.35849265371996	5.81196133120418	6.03395267298879	6.26494871655807	6.09930066215252	-0.15468663759676	0.628628118962258	0.893798717108293
Merged-chr1-24005610-4	chr1	24005100	24006100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026503)	promoter-TSS (NM_026503)	40.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	5.85809030368341	5.83412612924322	5.82878957042742	6.1716101265145	5.80290254823893	6.0097774041729	0.276770913573441	0.367160597028454	0.752113401392775
Merged-chr8-46881478-4	chr8	46880989	46881989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105398.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.23434777348222	6.19315193391406	6.28286525272192	6.15589775773506	6.35724882074812	6.48924359087323	0.170130190052684	0.544536394353068	0.857798684260618
Merged-chr18-58558657-2	chr18	58558157	58559157	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	2417.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	3.04655139721573	3.01260506206751	3.15540582608771	2.75272279392736	2.58653389478331	2.68462073488295	-2.17186600868831	0.00499578943147505	0.0611758126584513
Merged-chr2-84511733-4	chr2	84511185	84512185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4812.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.94252274256703	3.66047121164594	3.78425603351419	3.68129810887501	4.07229623812277	3.74887440802238	0.170119705298069	0.758195711295522	0.940104678746179
Merged-chr5-105731757-4	chr5	105731257	105732257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30947.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.91495673848708	6.64951678990055	5.84383666146681	6.11700620350805	5.9910810007434	5.2251823453571	-1.19593281448999	0.117304232875551	0.457331522238446
Merged-chr4-145239900-4	chr4	145239376	145240376	+	790.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6994.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.46291803891401	7.50715158249678	7.75007498036556	7.46265556365698	7.86982923341083	7.5637452761039	0.111059271898476	0.654840446061838	0.903959451132495
Merged-chr2-167942475-3	chr2	167942005	167943005	+	796.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10178.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.0322307787094	6.32864480947361	6.2715169234979	6.21507168476757	6.02588583284474	6.14755589314742	-0.148127905423262	0.610881106726284	0.885849400663435
Merged-chr3-149085026-3	chr3	149084527	149085527	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130392.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.69493307502336	5.70961834953209	5.72190206006524	4.79706200612796	4.64677716033883	4.72103810463582	-2.05651518355334	1.59139750954708e-08	1.37790847007693e-06
Merged-chr12-103425935-4	chr12	103425435	103426435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-68.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	6.54015696696272	7.15916462925561	6.87556658716282	6.7638769000671	7.04935623823009	6.73609320799278	-0.0342748275763793	0.907404657916753	0.978922672093987
Merged-chr5-122536181-3	chr5	122535744	122536744	+	907.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34019.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	4.06909664054712	3.7650006472112	4.02221984854055	3.41831969434072	3.34181071307481	3.53897383781039	-1.87975823393572	0.00124577450195593	0.0213949235828172
Merged-chr7-48998254-7	chr7	48997721	48998721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39148.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.4801225241664	6.44652224972766	6.19393151098304	6.38592815203134	6.56169952417259	6.41678552766199	0.118523210184852	0.667918781889276	0.908939323620354
Merged-chr4-155991748-2	chr4	155991248	155992248	+	890.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_080445, exon 1 of 1)	exon (NM_080445, exon 1 of 1)	930.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	3.67722618492696	3.4855192662497	3.56471260255438	3.38685825513794	3.23091236976199	3.78399793638921	-0.358989461640589	0.560839056954126	0.865325507192462
Merged-chr5-99298147-4	chr5	99297656	99298656	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-45229.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.26146405177925	6.15391196543714	6.18677993098462	6.38253069847996	6.28611041467055	5.94729688582869	0.0453809065020342	0.877226843401726	0.971507742080987
Merged-chr10-62944922-2	chr10	62944422	62945422	+	626.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-2107.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	3.48691894756738	3.37219847664592	3.44379583696133	3.57513470247186	3.44472364390919	3.7236764696827	0.527143025062519	0.362276901644323	0.747810564820261
Merged-chr19-45660452-4	chr19	45659965	45660965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013907)	promoter-TSS (NM_013907)	-272.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	8.07601990731799	8.18574365525742	7.89800525897728	8.09685802392249	7.92411715037973	7.92215554423973	-0.113263519351136	0.608388448014243	0.88499088740025
Merged-chr6-124830091-4	chr6	124829587	124830587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	-89.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	7.65598055281521	8.09172011620317	7.5562412529721	7.82292735792025	8.18274723993443	7.51995521717758	0.120908812628255	0.674069939731838	0.911832513842353
Merged-chr14-74947837-4	chr14	74947344	74948344	+	945.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	33.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	6.83379658945508	6.8604538362876	7.07031388798074	6.79504070619688	6.96592601361519	6.79750947990546	-0.0897376642747385	0.722645408938251	0.928882134885978
Merged-chr11-96969285-3	chr11	96968810	96969810	+	802.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	8378.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	4.98553313366018	4.79050620272862	5.07582416086937	4.61614541003786	4.9674773560273	4.74465056284202	-0.346658772172189	0.393223519973685	0.771515439837752
Merged-chr4-128660344-4	chr4	128659864	128660864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	5662.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.45976719149169	6.588976586809	6.57652784621936	6.12865747746912	6.33253344256797	6.06820782774694	-0.573236882477435	0.039836178829089	0.248328496254933
Merged-chr3-51653745-2	chr3	51653245	51654245	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7434.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	2.76094431491724	2.55216803098407	2.93651497704397	2.64179080605834	2.68718808331047	2.8349369736397	-0.174046533110896	0.818593708956765	0.957000374759562
Merged-chr16-94565613-3	chr16	94565107	94566107	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4599.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.75060183780951	3.70151959922367	3.8212116590258	3.57515683450001	3.50723623374596	3.63659161439157	-0.644036298858844	0.238211332085474	0.634863986424782
Merged-chr8-72572077-4	chr8	72571573	72572573	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151663, exon 1 of 3)	non-coding (NR_151663, exon 1 of 3)	250.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	6.86056911550907	7.33191478185702	7.14601451416494	6.99359027431755	7.36464409639091	6.87659901631154	-0.0339626524145282	0.90480900102182	0.978165789675139
Merged-chr12-112632490-3	chr12	112631993	112632993	+	930.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 3 of 12)	intron (NM_007421, intron 3 of 12)	-12335.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	7.44049103396615	7.47334927059016	7.64222264326251	7.80928235459917	7.66942082565402	7.47521561127935	0.212448997814841	0.363640992570216	0.749283507853983
Merged-chr10-17772658-4	chr10	17772163	17773163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23556.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	5.89772952166923	6.15427534699144	6.01366360263803	6.41979280753532	6.55205216423134	6.56576721776933	0.805702512287142	0.00421209944668837	0.0540614485207536
Merged-chr3-8986075-4	chr3	8985575	8986575	+	918.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	18129.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.64478564875213	5.89464542099677	6.10866139770015	6.62312319955396	6.20743397506492	6.1473546696715	0.136517129871703	0.696762624229643	0.919600673120789
Merged-chr7-99055440-2	chr7	99054889	99055889	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	85755.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.14841746226798	3.29166253427745	3.40538524741489	3.04268304199649	3.0655304636628	3.52562354199094	-0.243740344043596	0.715252116338818	0.926349618390309
Merged-chr2-181273948-4	chr2	181273396	181274396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	MTA_Mm|LTR|ERVL-MaLR	14070.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	6.93012626814048	6.78897652144384	7.0613011552866	6.7907338638352	7.04088463439527	6.96197661908579	0.0195098730365734	0.938911022551428	0.986550175078409
Merged-chr17-69222518-4	chr17	69222016	69223016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	54690.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	7.70175365718012	7.8611230557283	7.57084236768278	7.93733138443531	7.96497438267133	7.55689310737353	0.170564746086495	0.483325570196609	0.826150563582312
Merged-chr9-49485401-4	chr9	49484897	49485897	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	828.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	6.32012223534481	6.17615992142342	6.19535310244497	5.22524885196136	5.17845355830444	5.34889931009154	-1.81884216166856	8.05429588133989e-09	7.47136958410847e-07
Merged-chr11-103963583-2	chr11	103963083	103964083	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	5.46042799223754	5.13121375466714	5.03971529573074	4.76673756532847	4.79357291226695	5.32845433830583	-0.529158858270858	0.200279855734368	0.589262190319174
Merged-chr2-71594682-3	chr2	71594184	71595184	+	858.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-47930.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	2.46480511012348	2.63928246189046	2.39975727122181	2.75038637937444	2.4952199306698	3.0893884847941	1.5698404260417	0.0683980717626984	0.34214262734372
Merged-chr13-73764644-2	chr13	73764144	73765144	+	952.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	947.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	5.79272700929941	6.17064374999317	6.17699605741036	6.04686905825981	6.2128644108653	6.13288829744633	0.137269663078152	0.651203006586056	0.90274227832685
Merged-chr3-9786808-4	chr3	9786298	9787298	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	46881.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.87584582847313	2.76998112583291	2.87799631138246	3.06561136055766	2.60777914567179	2.63233933844735	-0.267738843898032	0.73066314996683	0.930998872677212
Merged-chr7-27452140-2	chr7	27451733	27452733	+	822.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-185.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	4.58646741701488	4.71672165004217	4.6469575372337	4.9292031023537	4.96523848331458	5.04718332688516	0.738653160111479	0.0577988977404565	0.310685900429065
Merged-chr18-36724765-3	chr18	36724223	36725223	+	835.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009841)	TTS (NM_009841)	2092.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	5.53620915136376	5.59475922119604	5.45677394298595	5.20727155697894	5.03453896420248	5.49093812654029	-0.573754313730464	0.104543747966266	0.431512826954913
Merged-chr13-98814169-4	chr13	98813674	98814674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1275.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	7.20553079566402	7.5101972763206	7.3595536951699	7.49132373687136	7.6940289521596	7.59929620083638	0.342383094087018	0.148151223628402	0.513628453046031
Merged-chr1-174029610-3	chr1	174029048	174030048	+	970.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172648, intron 1 of 6)	intron (NM_172648, intron 1 of 6)	2207.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	5.05189613847887	4.8374403887923	5.01916558978296	4.86098875537104	5.34881330147294	5.18436740626079	0.387346676153203	0.321207049516846	0.714789344506301
Merged-chr3-9896587-3	chr3	9896138	9897138	+	910.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62959.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.55388480632633	3.76822157952228	3.61904506765361	3.43484173167481	3.3675390074856	3.41467933168616	-0.913070647286357	0.114198467364575	0.451347839855202
Merged-chr11-5098397-4	chr11	5097966	5098966	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290491)	promoter-TSS (NM_001290491)	622.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	8.51733970532529	8.78355818603607	8.52288440590083	8.51307792645808	8.78606463027512	8.73141228794404	0.0916486686208195	0.673724043259336	0.911635961678937
Merged-chr4-134286809-2	chr4	134286309	134287309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146156, intron 1 of 2)	CpG	444.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	6.40049399805475	6.56462419115441	6.69921259400984	6.61271295715431	6.47554911490695	6.54652851438481	-0.0156286279345755	0.953387604904592	0.989446911725587
Merged-chr2-6721184-4	chr2	6720708	6721708	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	454.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	8.04311876414099	8.31670354638725	7.82535219476303	8.0041732009102	8.39766631650336	8.16928844600796	0.16898865918102	0.497938694949788	0.833827995901319
Merged-chr1-91034739-4	chr1	91034239	91035239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	Lx7|LINE|L1	-18705.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.32763124850103	7.24480571589168	7.27393276170646	7.31673085676322	7.42011852790647	7.17540714046428	0.0479366479573427	0.837297024142871	0.962133986386607
Merged-chr13-98926445-4	chr13	98925925	98926925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-41.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	8.86976107044604	8.99327368108669	8.60953007265149	8.67403585342315	8.52847146378059	8.49414207061103	-0.3721125523348	0.0864358074356646	0.389424046397112
Merged-chr12-80853824-4	chr12	80853300	80854300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	63268.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.70629670735585	6.62470810782218	6.69629306699027	6.79696807738451	6.84224181416272	6.75501527318514	0.198635734699001	0.424502957506031	0.792697196836987
Merged-chr6-13875161-4	chr6	13874682	13875682	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	3613.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	3.53604581690292	3.33728600423472	3.67897817987207	3.59763987014065	3.48755463548682	3.594851281273	0.145545532867049	0.801315261646125	0.952920398614417
Merged-chr17-67343133-4	chr17	67342649	67343649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	11310.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.4012196052546	7.37456617959556	6.91696770446096	7.00131970721999	7.09845686763528	6.91592261716671	-0.372996337369304	0.157544357690106	0.528949316655706
Merged-chr10-117307241-4	chr10	117306728	117307728	+	795.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14360.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	2.4188570398336	2.52549775771981	2.6239135527024	2.55826498253571	2.56097146885054	2.75726520819624	0.592713471093616	0.44666639001999	1
Merged-chr14-31128399-4	chr14	31127911	31128911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	519.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	7.52232951822923	7.61572940686063	7.4599096682569	7.4080844578207	7.66695274879336	7.28328895922632	-0.0941505176875333	0.696034581035036	0.919291538728398
Merged-chr2-156344962-3	chr2	156344445	156345445	+	774.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-32241.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	3.12595510025401	3.12790807071941	3.02456371654611	3.13621211472232	3.03706594704276	3.32636327565339	0.297441776869249	0.649283449641852	0.902147045789438
Merged-chr8-126596418-4	chr8	126595919	126596919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2983.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.77161148727638	6.90822969687349	6.49371857734062	6.73951919598287	6.70410353173328	6.31329591062396	-0.212643475811583	0.46057742240549	0.814549218123999
Merged-chr2-173538199-4	chr2	173537721	173538721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15629.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	6.58576809210361	6.85771694004872	6.7382914632558	7.11532778705007	7.33371271131032	6.91778974357436	0.6360008952462	0.016837081036566	0.143985594952784
Merged-chr17-27911919-4	chr17	27911429	27912429	+	823.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	2623.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	7.38502846503952	7.53015933577422	7.53779448206407	7.28955968352059	7.43205594895821	7.0990599107859	-0.287042157439883	0.231295296270328	0.627138262906069
Merged-chr4-132422142-4	chr4	132421677	132422677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 1 of 12)	CpG	269.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	6.6202312915984	7.05754462209692	6.84370471116106	6.88048427920605	6.92010298886941	6.74916540898921	0.00133884894805678	0.996015013951965	0.998961028701257
Merged-chr2-52573730-4	chr2	52573270	52574270	+	859.679199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-15159.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.39130424320935	3.45846894892113	3.76705935665735	3.21828612492345	3.3787371090718	3.26200506603957	-0.953033773122123	0.126235549682576	0.475113425818157
Merged-chr12-91590995-4	chr12	91590503	91591503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175335)	promoter-TSS (NM_175335)	-516.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	8.28174698105226	8.62713220615348	8.2238035372488	8.18477392515975	8.66083588162499	8.1857924385323	-0.0322505883148314	0.899694630542823	0.976683360561224
Merged-chr12-102393316-2	chr12	102392816	102393816	+	895.2000119999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011175)	TTS (NM_011175)	46497.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.65705116991102	4.09050285342995	4.57287756149667	4.12302360049501	3.96993693714364	4.20680641807015	-0.151974944158866	0.789755198708164	0.949308041750703
Merged-chr14-54254021-4	chr14	54253521	54254521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113358)	promoter-TSS (NM_001113358)	-92.0	NM_010015	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	7.55678019712964	7.56403000338338	7.35300651962264	7.73140031992558	7.71238158539897	7.41018241574237	0.193205184232901	0.41589640021833	0.786766117298325
Merged-chr15-96633787-4	chr15	96633305	96634305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	MTD|LTR|ERVL-MaLR	8157.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.46298756956841	6.6162944143365	6.25065010812323	6.09779094139665	6.35812171614386	6.31074966594919	-0.328453576807592	0.253457516003695	0.650876272811414
Merged-chr8-80242811-1	chr8	80242311	80243311	+	794.0	f0_balb.idr	Intergenic	Intergenic	-184803.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	3.23269426833645	3.46036363093451	3.5606454277944	3.33629518694325	3.63719604084047	3.47117585241841	0.265987519684597	0.661863259418191	0.906495637422278
Merged-chr13-55728096-3	chr13	55727595	55728595	+	802.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028281, intron 1 of 3)	intron (NM_028281, intron 1 of 3)	727.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	6.23136460637271	6.53140636564727	6.67634422667027	6.29121999252662	6.55982655443141	6.65749104190949	0.0379717703546675	0.896641646990806	0.975838835430135
Merged-chr11-87593218-2	chr11	87592718	87593718	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 1 of 18)	intron (NM_133215, intron 1 of 18)	1052.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	5.27211710779583	5.4509737541427	5.31418216545283	5.10570574905166	5.23539315553504	5.00239585982859	-0.450493874031153	0.206553699215665	0.597141275948059
Merged-chr11-32568221-3	chr11	32567721	32568721	+	763.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	L1MB1|LINE|L1	34955.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.72635550547347	3.60925212461848	3.89387878655201	3.56075699140113	3.75554019227222	3.66393649440228	-0.252668617361942	0.646501891897798	0.90100465546023
Merged-chr4-128991893-2	chr4	128991393	128992393	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1331.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	3.52857216383686	3.69704342884559	3.69094727699153	4.17649937501623	4.16079899654769	3.76378571079667	1.32075250269743	0.0152592071266908	0.134230691045321
Merged-chr6-31210537-2	chr6	31210037	31211037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	B3|SINE|B2	7937.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.87162970788462	6.97968181120878	6.89013825062958	6.75832787102941	7.07270690197495	6.78373516999735	-0.0414212883331969	0.87204238514315	0.970261003150518
Merged-chr6-97439150-4	chr6	97438650	97439650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	20136.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.42894880990865	7.47796594991814	7.25580589353615	7.32221911925484	7.50707175635437	7.241284094712	-0.0406206604882551	0.864643675556935	0.968297921776544
Merged-chr6-128837685-4	chr6	128837167	128838167	+	868.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11352.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.18506200441647	4.12544486971225	4.28565548577839	4.14822204715901	4.23499476132559	4.17299698039516	-0.0189135405389893	0.967439167487497	0.992555129128888
Merged-chr6-72437406-2	chr6	72436906	72437906	+	691.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145569, exon 2 of 9)	exon (NM_145569, exon 2 of 9)	-1277.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	4.20633217146943	4.46435456933564	4.25800482200605	4.52514315664028	4.6429448711653	4.41910446845729	0.558875646316698	0.210575056278916	0.602756520102378
Merged-chr1-58711691-5	chr1	58711204	58712204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289704, intron 1 of 9)	CpG	213.0	NR_149256	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	9.16574008936899	9.30865948219203	9.0165145836174	9.19914914869129	9.36710435712955	9.07859202361992	0.0703592639831385	0.73753735414378	0.933775317218453
Merged-chr18-82569051-4	chr18	82568556	82569556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	14548.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.33436912115978	3.48137761076078	3.53193412069033	3.31011099792222	3.37986593738148	3.44273055178196	-0.276033348911742	0.640683119085214	0.898535815546711
Merged-chr6-51467828-3	chr6	51467269	51468269	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	2125.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	4.82700174310077	4.93378250006294	4.874651699594	4.75289953391321	4.91413362130834	4.53100085092654	-0.278582600868761	0.492647618069856	0.831177181177099
Merged-chr2-109891813-2	chr2	109891313	109892313	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011699, intron 1 of 4)	intron (NM_011699, intron 1 of 4)	935.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	5.07490727147386	5.17638608441727	4.84530248209271	5.01117750574536	4.94578268854696	4.98730734601324	-0.150039733120592	0.6907432614241	0.917977377427794
Merged-chr19-40638743-4	chr19	40638241	40639241	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21029.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.35016808383856	7.50957753668208	7.55674982724463	7.46256836968906	7.58117934997028	7.32132028652698	-0.0090683172171348	0.969052207390733	0.992942591342612
Merged-chr7-80919115-4	chr7	80918605	80919605	+	885.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019951, intron 4 of 5)	intron (NM_019951, intron 4 of 5)	-14043.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	5.25823120811536	5.34280770826728	5.25381657862703	5.48844908474527	5.56584118735143	5.18183202824472	0.289212769299294	0.408285499506723	0.781982251625038
Merged-chr3-52268797-1	chr3	52268297	52269297	+	1000.0	f0_c57.idr	5' UTR (NM_019739, exon 1 of 3)	5' UTR (NM_019739, exon 1 of 3)	460.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.87681798736866	6.78096405160579	6.77367420763095	7.07747230974087	6.78186012266137	6.84744530677219	0.146473957382107	0.565285899373068	0.866599059240356
Merged-chr17-56613439-4	chr17	56612971	56613971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	76.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	6.99411724676145	7.06091223790348	6.86724965347084	6.91113323818159	6.88697746373719	6.72362769509589	-0.204793592198366	0.40963283504799	0.782996589845341
Merged-chr1-36572364-3	chr1	36571869	36572869	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13988.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	7.44413298143018	7.12972312123463	7.53660846465667	7.54244677863157	7.74695965555594	7.52523259067993	0.347369308706952	0.159627061086335	0.531877190382303
Merged-chr4-43577487-2	chr4	43576987	43577987	+	760.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172692, intron 1 of 16)	intron (NM_172692, intron 1 of 16)	-1248.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	4.04378383606518	4.34755232802821	4.25644997184948	4.35577701080205	4.13344678542258	4.532348474926	0.317128060248751	0.507457095498873	0.839119435657198
Merged-chr14-118662836-1	chr14	118662336	118663336	+	668.0	f0_c57.idr	intron (NM_001033336, intron 3 of 30)	MTE2b|LTR|ERVL-MaLR	14095.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.46307588052547	4.3153296887739	4.19838814863784	4.82475743328321	4.46489468015608	4.626941337861	0.765818644167553	0.0879468587215321	0.393486225567371
Merged-chr4-101214226-4	chr4	101213740	101214740	+	856.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	51042.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.97413979318654	5.74061647914042	5.92013121970589	5.73066306158116	6.10989362013453	5.95780415738098	0.120547369054704	0.701057369181302	0.921119575152581
Merged-chr10-80700949-4	chr10	80700464	80701464	+	798.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	856.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	4.73362531548912	4.52700145577994	4.71770625803924	4.72031362351423	5.04054048580764	5.03578487215467	0.640826964607852	0.113561504815997	0.450187448195983
Merged-chr14-30628422-2	chr14	30627922	30628922	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2214.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.0636526245749	3.18831751619468	3.44951064932073	3.25328077816154	2.90177477150143	3.19694642085692	-0.489983806455433	0.471220728193816	0.819888573544447
Merged-chr3-61415423-4	chr3	61414899	61415899	+	969.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50892.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	7.43131715589636	7.7206376239052	7.50970749357709	7.55789284393565	7.93255776571347	7.51568679510819	0.187132938970634	0.457256009745277	0.812185298776444
Merged-chr6-39779855-2	chr6	39779355	39780355	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31081.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	6.02180244305165	6.19412054176713	6.20618809190581	6.16781831281107	6.38739752668239	6.5073649698335	0.362948329618098	0.206040244536897	0.596644693164169
Merged-chr2-26445426-4	chr2	26444904	26445904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	-188.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	8.05591161749849	8.13034007198771	7.6786815097498	7.52232085192932	7.68017184401681	7.44309893877937	-0.602862993621972	0.0135640909808729	0.124081011690465
Merged-chr11-26590473-2	chr11	26589973	26590973	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	3447.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	4.07144446159175	4.22243690947529	4.24098195114997	4.63840744776711	4.7956394262573	4.87455071757117	1.50389563959266	0.00062522992861619	0.0125186596482375
Merged-chr5-90898676-4	chr5	90898144	90899144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	7.75358073939857	7.93045896036096	7.61889286676038	7.54057837443693	7.75314796397922	7.31378585918558	-0.31881184330269	0.198883755520698	0.587343866831168
Merged-chr5-34525808-4	chr5	34525300	34526300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011893)	promoter-TSS (NM_011893)	16.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.39811450095521	5.70971344043012	5.86342245066341	5.81402128751767	5.52101610310054	5.83017967298448	0.106900442274141	0.753869722145565	0.938570691167124
Merged-chr5-137786822-4	chr5	137786318	137787318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-117.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	7.83382519954599	7.59070689995629	7.90141289698328	7.94209757212312	7.91957893560856	7.95009164908272	0.227507220245546	0.306969048186754	0.703099001056797
Merged-chr16-58475036-4	chr16	58474530	58475530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 7 of 10)	intron (NM_001357433, intron 7 of 10)	48396.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.34623912963299	6.14036798307693	5.9113225706092	5.59321908070194	5.61263302342933	6.01922739569632	-0.716887273273153	0.0284744357967123	0.202038104696243
Merged-chr1-55511237-1	chr1	55510737	55511737	+	551.0	f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	B4A|SINE|B4	105291.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.99380244900183	2.97308397894129	2.91554646581609	3.0307355350373	3.00886875433704	3.04899647882267	0.303287345328849	0.649127437316924	0.902118776529041
Merged-chr18-60932493-4	chr18	60932026	60933026	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 1 of 17)	intron (NM_177407, intron 1 of 17)	6894.0	NM_177407	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	3.22691893528009	2.93592896503241	2.97435961953643	3.19183121555117	3.16820561613525	3.39425738459074	0.833726777260622	0.214323196464145	0.607446165658035
Merged-chr6-134539636-4	chr6	134539096	134540096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27317.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	7.24876684553154	7.47944100822148	6.86672253024871	7.79024500202774	8.16094042908088	7.3872940758973	0.8660832040515	0.00467838015794043	0.0584765894820351
Merged-chr6-17497259-2	chr6	17496759	17497759	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 3 of 21)	intron (NM_008591, intron 3 of 21)	33302.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	3.19933425554817	3.52964615643063	3.36904447211219	3.43481494323757	3.00457243583295	3.08354339133479	-0.749686132634371	0.266757264445054	0.664188627163631
Merged-chr15-101224653-2	chr15	101224153	101225153	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045326)	promoter-TSS (NR_045326)	124.0	NR_045327	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	2.95782256138535	2.93994883637976	2.84501291834505	2.94031932545781	3.09172077021526	3.15750642179657	0.680719778090766	0.318550830978442	0.712468820902997
Merged-chr2-156418571-4	chr2	156418075	156419075	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2334.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	4.28940737331536	4.27019765148735	4.4684963504747	4.46071931449378	4.75934011799766	4.16547882060202	0.405248107463902	0.392954360030263	0.771425512588747
Merged-chr12-100924853-2	chr12	100924353	100925353	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-16655.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	5.98233390050896	5.82827957562825	5.34145955760955	5.16849800302528	5.23773161266061	5.16364011477699	-1.08241884827146	0.002948588347292	0.0415770444333965
Merged-chr4-129062904-3	chr4	129062382	129063382	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	4611.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	5.61817658392166	5.63497921691262	5.53724542116892	5.52823052256628	5.44839986877572	5.48363085448167	-0.218855013655771	0.494793169994808	0.832098796134741
Merged-chr9-21425460-3	chr9	21425015	21426015	+	885.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	607.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	6.93034448998813	7.25355538780528	7.26362039026938	7.12136044703912	7.2740741480744	7.54515998743988	0.245953331390667	0.348079020695228	0.735982909356061
Merged-chr9-61056914-4	chr9	61056420	61057420	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39851.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.35033052322714	4.00141841604717	4.19388254628264	4.46721059714664	4.62480094751432	4.31064857374203	0.767632652888911	0.101945726356486	0.425901295598742
Merged-chr6-38761448-4	chr6	38760954	38761954	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	75857.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.00359135577748	4.25270074837143	4.26091645144698	4.14610196231264	3.59104869376383	4.28550660955113	-0.400891969284915	0.470110969221265	0.819289842432989
Merged-chr4-139493821-4	chr4	139493328	139494328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36720.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	5.404714807045	5.32939744959877	5.5842880101266	5.4898919539021	5.34559785615908	5.39052618782717	-0.0516957324859765	0.878059448517624	0.971816559882595
Merged-chr10-121625085-2	chr10	121624585	121625585	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 1 of 24)	intron (NM_001359618, intron 1 of 24)	1247.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	3.84302568029666	3.88445014701934	3.72221233013984	3.96978126322428	3.79365120426916	4.04189083878814	0.34175594687292	0.510377043295999	0.840886591313675
Merged-chr2-92066877-4	chr2	92066383	92067383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42713.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	3.50104409855713	3.15057352873204	3.04160328208445	3.53387528414371	3.28688134820349	3.36379444667439	0.567896359782808	0.394155365171281	0.77206906441863
Merged-chr5-86805632-3	chr5	86805122	86806122	+	571.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177680, intron 1 of 16)	B1_Mur4|SINE|Alu	1356.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	6.05773656382907	6.457791145426	5.98873447331896	6.34038019154699	6.46705845363302	5.95031956586823	0.146334222155843	0.65253738207885	0.902986290245403
Merged-chr5-134552398-4	chr5	134551907	134552907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009990)	promoter-TSS (NM_009990)	27.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	7.46455430463579	7.62845157429895	7.1813532649896	7.59496729886225	7.65874727936036	7.3128096686599	0.133141340514128	0.60226533565433	0.882299035371658
Merged-chr4-86948969-3	chr4	86948469	86949469	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	74555.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.26019720866106	3.04795586713597	3.24950323824666	2.9953576148297	2.88325103334417	2.91299642546035	-1.21217780711581	0.0763462544925625	0.36384757405922
Merged-chr12-12298736-2	chr12	12298236	12299236	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	MER94|DNA|hAT-Blackjack	36597.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.59025245436383	3.72890895163522	4.35866746335067	3.95011818430967	3.75819919397031	3.9614927718286	-0.116569366737467	0.841911512328636	0.963002495523594
Merged-chr7-100458336-4	chr7	100457848	100458848	+	939.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 31 of 32)	intron (NM_001017985, intron 31 of 32)	-14643.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.42877704569267	6.32593644791546	6.46369280502221	5.09050095741055	5.14816107659959	5.45697655755331	-2.14661532318429	2.29280753322286e-11	3.48138556978846e-09
Merged-chr4-149989232-4	chr4	149988738	149989738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	13998.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	5.89768015633884	6.21826462778075	5.67571628548127	5.54318498136992	5.21531363645129	5.37901443118343	-1.06870086308256	0.0021270905648015	0.0323625803101121
Merged-chr16-24936051-4	chr16	24935538	24936538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-123601.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.96367042708609	6.12072925583376	5.99812712520413	5.60992401102268	5.97354760506631	5.89505244458041	-0.335967921676948	0.278140682439338	0.675475432925552
Merged-chr2-126708086-2	chr2	126707586	126708586	+	587.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	758.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	7.20001115329074	7.58686252855968	7.36455827268392	7.59609989842309	7.71280049889095	7.29587419116921	0.231998682981261	0.366767219436606	0.751896619413869
Merged-chr16-33180125-4	chr16	33179599	33180599	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4972.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	5.67099934894826	5.56417044188098	5.86815939130619	5.76686711450914	5.97519457896129	5.92918666795325	0.356872938857536	0.254445560242288	0.651443266973549
Merged-chr6-6280995-3	chr6	6280527	6281527	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136906, exon 3 of 3)	non-coding (NR_136906, exon 3 of 3)	32368.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	4.02440416094396	4.58676945901751	4.51302013823173	3.76181809847591	3.73534728741004	3.62657215249658	-2.20768481839545	0.000106258361599025	0.00298599991622145
Merged-chr2-103485173-4	chr2	103484655	103485655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-2.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	7.09019395092223	7.32395881418187	7.10080722127065	7.23859611372587	7.43962336000224	7.28032073763776	0.218566002254627	0.3660388371234	0.751105402903166
Merged-chr18-38403551-4	chr18	38403070	38404070	+	891.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-15337.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	5.61881442214794	5.40105379327501	4.88903851265232	4.85905546083572	4.48980469511781	4.46348267681376	-1.57965351209852	0.00034198236874311	0.0077562030252401
Merged-chr1-74243807-2	chr1	74243307	74244307	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	7290.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	5.29515255852203	5.25067022300003	4.95292678473797	5.55193971444705	5.31572855124803	5.65133927123031	0.627032385726433	0.0847093956070208	0.385434416251354
Merged-chr6-29242429-2	chr6	29241929	29242929	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-26065.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	3.21090984647869	2.83090625353327	3.02431242713575	3.03469580480228	2.95439209624667	3.26732443229686	0.240774129244663	0.730288444097876	0.930849277826227
Merged-chr7-127478896-4	chr7	127478391	127479391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6330.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	7.98948740133475	8.12945961069284	8.0973348337675	8.14345215033811	8.36367134463178	8.25189618672346	0.261762695093331	0.216571634964215	0.610067901049387
Merged-chr6-38899476-2	chr6	38898976	38899976	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-19510.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.32285458777031	5.25092415824465	5.27916282511398	5.29119176423644	5.52703179389999	5.34296189682643	0.225067658336806	0.511179205486549	0.841331921585713
Merged-chr13-45414308-2	chr13	45413808	45414808	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24566.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.08153255266657	3.87361881072426	4.07882398660791	3.73216604438925	3.5793804146167	4.00994126410632	-0.748695192284655	0.16414959079453	0.538331986080373
Merged-chr3-107111002-3	chr3	107110508	107111508	+	793.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	9441.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.86306908691543	4.65960014585647	4.82353628226946	4.90914604349325	4.95497834286489	5.22457142061541	0.542496362287391	0.165792425135147	0.540926797264843
Merged-chr3-107205333-4	chr3	107204827	107205827	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	16405.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	2.35406493098082	2.02574265645471	2.15913489292928	2.30605723831917	2.2349116637328	2.55896037319453	1.223400837186	0.190917023962476	1
Merged-chr9-120118391-4	chr9	120117897	120118897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 3 of 6)	Tigger7|DNA|TcMar-Tigger	7998.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	5.31206690798535	5.30231043103217	5.05930911879925	5.3003991059369	5.57350230532587	5.33064332640766	0.349947177795076	0.324556825597742	0.717544999689449
Merged-chr5-8256604-3	chr5	8256105	8257105	+	870.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	RLTR26_Mus|LTR|ERVK	111555.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	2.20716349275336	2.13988827520319	2.15666540331954	2.30450589538788	2.20303880971451	2.61508702689366	1.43894789272788	0.108904864241565	1
Merged-chr7-97332252-4	chr7	97331752	97332752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039039)	promoter-TSS (NM_001039039)	-71.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	6.6836286465655	6.7357000155849	6.38999181309595	6.4451544562128	6.24808117814549	6.18165859947383	-0.525972983539027	0.0619558596876579	0.323230697232844
Merged-chr5-125106428-3	chr5	125105957	125106957	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	72757.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	2.96601070924095	2.96315633260279	3.07861906666235	2.82069592574943	2.4148330628101	2.79479614295955	-1.68244112117577	0.0462704316317975	0.272176502614853
Merged-chr7-48999480-2	chr7	48998980	48999980	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	40407.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.75249427689632	5.63099987531816	5.49842411846722	5.48895317770272	5.68426585259486	5.40836975441717	-0.177711847275312	0.592140958669599	0.877953024417892
Merged-chr3-108796217-2	chr3	108795717	108796717	+	755.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 17 of 18)	intron (NM_011504, intron 17 of 18)	44285.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	4.90884716839136	4.56816714825722	4.78154676940802	4.82095459803953	4.94179120989511	4.99229629113071	0.35782105154519	0.370048510233002	0.75453333756782
Merged-chr14-46788346-4	chr14	46787823	46788823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009919)	promoter-TSS (NM_009919)	34.0	NM_001355011	12793.0	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	5.70277019539205	5.23083512105068	5.51212277126132	5.66701021010153	4.97145068685201	5.54688646997362	-0.139848813308919	0.726228054109162	0.92976141932693
Merged-chr18-6501448-3	chr18	6500974	6501974	+	921.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	B3|SINE|B2	-10617.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	2.81579259575339	2.80755694476083	2.99317794892561	2.85316051073971	2.84117978690228	3.33433531375753	0.707083865129128	0.330852061475701	0.722226411767471
Merged-chr1-91074806-4	chr1	91074295	91075295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	21351.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.74156525336806	6.61469872168867	6.64881538101665	6.64253458519535	6.7762905054509	6.51761962714715	-0.0183848260840982	0.943706835654658	0.987486743811577
Merged-chr7-17023524-2	chr7	17023024	17024024	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	4390.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	6.62642027496433	6.21291548471782	6.55798966239182	6.90124974446292	6.52103722718453	6.25215807184573	0.186916701295836	0.551998752639758	0.861546661145201
Merged-chr10-123075983-2	chr10	123075483	123076483	+	936.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153395, exon 1 of 34)	5' UTR (NM_153395, exon 1 of 34)	522.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	7.91916329585784	7.65597140372328	7.42912676816839	7.70172688119135	7.28666298074751	7.15064868663174	-0.412719789134168	0.135344340578887	0.49154257303863
Merged-chr16-57503547-2	chr16	57503047	57504047	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-45695.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.25209619936001	6.69905967705803	6.61840982297109	6.16524881887216	6.32624698102816	5.79881872095426	-0.669241623057759	0.0367503658469683	0.236052415315228
Merged-chr3-152212807-2	chr3	152212307	152213307	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355374, intron 1 of 19)	Lx3C|LINE|L1	2385.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	3.73999747692602	3.79446340519972	4.0393953564489	3.80972235729121	3.72837734125038	3.92220105788326	-0.125940382430356	0.811011663199356	0.955098218346624
Merged-chr11-82820909-4	chr11	82820424	82821424	+	926.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007465, intron 1 of 6)	intron (NM_001007465, intron 1 of 6)	8119.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	5.06814642055466	4.94713497238751	4.97399492182827	4.51741024896968	4.92893905934542	4.69742275059248	-0.581942316315948	0.153074175458596	0.521796017169638
Merged-chr4-101657817-1	chr4	101657317	101658317	+	605.0	f1_c57bl6.idr	intron (NM_175036, intron 3 of 3)	intron (NM_175036, intron 3 of 3)	10034.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	3.47982681144234	3.73885814774789	3.71386425697927	3.6115869481826	3.62849330213564	4.14818166412738	0.533719798782231	0.360174001753148	0.746468395814061
Merged-chr5-139793626-4	chr5	139793129	139794129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	2093.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	6.71162223454688	6.86126370961214	6.52739495220408	6.40280372561128	6.5800647938707	6.03692072243574	-0.541479783769422	0.0700898356513959	0.346690943103159
Merged-chr12-103434873-3	chr12	103434386	103435386	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194069, intron 1 of 3)	RMER10B|LTR|ERVL	697.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	6.80147851036197	7.19102731950992	6.9983805328465	7.11456750118347	7.49821188648866	6.83638897133035	0.27543618439369	0.345215890411267	0.733666487940844
Merged-chr7-81214865-2	chr7	81214365	81215365	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	1061.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.13947689107803	6.11132008616921	5.88824713661734	6.3851652612866	6.09742894326491	6.30526991382634	0.342857298236078	0.244608498901734	0.64198815440115
Merged-chr1-74380559-4	chr1	74380059	74381059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 6 of 14)	intron (NM_013612, intron 6 of 14)	5356.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	6.0301991881343	5.75734219878913	6.64332595428243	6.211589725061	6.19088936680766	6.32249892089475	0.088877556558109	0.799437161620587	0.952248176414355
Merged-chr12-3823492-2	chr12	3822992	3823992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16332.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.57794755489181	6.52339483219005	6.14292772912892	6.5344918536832	6.73070558449756	6.20429575839554	0.131093333443244	0.669224098177041	0.909570225267722
Merged-chr1-172334870-4	chr1	172334359	172335359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5537.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	7.51003528567363	7.30961775337693	7.28624738405446	6.70949258533668	6.79260134282827	6.67118939294717	-0.980367468943595	6.38815115817726e-05	0.00194349280281394
Merged-chr15-64057163-4	chr15	64056682	64057682	+	999.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	2582.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.82877235471225	6.01162414607959	5.92894856958872	5.93303381769471	5.85389627631678	5.98991549796087	-0.00761426700814341	0.979559789370453	0.995271707563192
Merged-chr5-36727233-2	chr5	36726733	36727733	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21446.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	6.86702473150476	6.89325759119561	6.5961331010136	6.8115786081846	6.98677526237756	6.50882689469098	-0.00517579242668942	0.985190104498401	0.996873682039026
Merged-chr9-40765770-4	chr9	40765261	40766261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-35512.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.51009506870795	6.68442263396008	6.20867324805226	6.18734708636909	6.51131830366045	6.29053621756473	-0.242778302989798	0.414502587169754	0.785828006486374
Merged-chr17-47527435-2	chr17	47526935	47527935	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	22384.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	2.93650986901076	2.49976716100214	2.76375090398882	2.536110614103	2.55178643003183	2.71438262430707	-0.800725388399848	0.314581956964303	1
Merged-chr6-127236715-4	chr6	127236171	127237171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71296.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.50938877379514	4.73761484707801	4.22467834771413	4.73361863353938	4.84750516794499	4.53582888071882	0.473570496828524	0.295717028958871	0.692631790059637
Merged-chr2-153357003-4	chr2	153356505	153357505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 2 of 11)	intron (NM_001039939, intron 2 of 11)	10866.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	5.4323740573995	5.59217783807406	5.72711887799142	5.86358049297353	5.32790546036503	5.68641631489965	0.102332027475569	0.771194064256403	0.943589735529798
Merged-chr1-171222031-2	chr1	171221529	171222529	+	882.724976	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001037170, exon 2 of 10)	5' UTR (NM_001037170, exon 2 of 10)	465.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	4.10161639453373	3.84030495879927	4.37113258922051	4.22046016685075	3.94254992234838	3.66142460035833	-0.437340333167951	0.436269795709908	0.799472869647494
Merged-chr4-149398438-3	chr4	149397936	149398936	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 2 of 26)	intron (NM_022022, intron 2 of 26)	28195.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	2.73638775291819	2.78104796327059	2.94429935782667	2.8747438543366	2.4912927905932	2.64878543718321	-0.742956595972645	0.339640555046832	0.729326516586858
Merged-chr3-27194179-4	chr3	27193667	27194667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	L3|LINE|CR1	11163.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.52641337911159	8.75453856542716	8.16025237455903	8.21946905521169	8.61535746398805	7.94160666063045	-0.29384440499631	0.292826252389032	0.690005856614935
Merged-chr2-93942449-2	chr2	93941949	93942949	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	14651.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	4.13968647062015	3.95328427467557	3.87780734362617	3.77822056840222	4.08025094845475	4.27373142789697	0.164034603493088	0.75345311049068	0.938549578325581
Merged-chr2-66143047-2	chr2	66142547	66143547	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18254.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	4.82618561622917	5.00336170321792	4.81984509952914	4.79551991072052	4.51024390273842	5.05972783453653	-0.215867672524754	0.606201083325158	0.883902494327967
Merged-chr4-146174029-2	chr4	146173529	146174529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	RMER17B2|LTR|ERVK	16339.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	3.70378105122777	3.89029692594414	3.59562575036318	3.68054574858258	3.64268226618252	3.72100973493084	-0.212413501327605	0.697541426290579	0.92000165836138
Merged-chr9-87021274-2	chr9	87020774	87021774	+	794.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	-755.0	NM_024195	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	2.76247043316405	2.87968570768014	2.84417158128236	3.00527380714659	2.82249450352774	3.14738658616419	0.796824520256561	0.260763996523133	0.658262563639854
Merged-chr10-94372173-2	chr10	94371673	94372673	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60224.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.4861177798507	6.34948358603514	5.85146524897384	6.2356618278416	6.35477233307431	5.85986574701368	-0.151100358346375	0.652877671340069	0.903027303548785
Merged-chr19-3932606-2	chr19	3932106	3933106	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2580.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	6.83276643305306	7.0761664943166	7.19035091986282	7.12717332089251	7.35343435816268	6.94972114401668	0.19194889326054	0.467478018386239	0.817990683108999
Merged-chr3-144694957-2	chr3	144694457	144695457	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	25378.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.52263865183567	5.63768141513375	5.46271054134803	5.82705758012113	5.85975330698051	5.80337725291009	0.518631725055231	0.0964671732653946	0.414036586321995
Merged-chr2-34799010-2	chr2	34798510	34799510	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 1 of 7)	ID_B1|SINE|B4	902.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	3.72567618749581	3.78917252849155	3.64671042543804	3.43231090737005	3.8418293098699	3.76929904651068	-0.091486823090489	0.871744989356894	0.970250220039897
Merged-chr18-67939715-2	chr18	67939215	67940215	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	6542.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.94981928468638	2.68962519410996	3.13251242052496	2.68030438853301	2.64039502999505	2.60836167911777	-1.52201594138302	0.0514257620396787	0.289202136239361
Merged-chr12-73765314-3	chr12	73764805	73765805	+	822.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-136019.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.29741899347066	3.18258856498781	3.53330387134854	3.16442301244616	3.0636430195169	3.45092855479037	-0.448870519555969	0.490246086714963	0.830042606694236
Merged-chr4-150545010-4	chr4	150544487	150545487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	107187.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.10325381285301	6.9243641352629	6.93728877420247	7.09108032340249	7.38464901146891	7.12958347366435	0.33564627109377	0.17884944638741	0.560177193729651
Merged-chr2-38478478-2	chr2	38477978	38478978	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	2.58278385097874	2.37677764046296	2.59923829864256	2.42446776876321	2.23916178424351	2.6116242566648	-0.565988017062554	0.50334408425945	1
Merged-chr17-31076885-1	chr17	31076385	31077385	+	618.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	B1_Mus1|SINE|Alu	19191.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.09587086374468	6.95010344959481	6.88925165101206	6.58747275975367	6.66021781168556	6.0648388277651	-0.788554185920021	0.00745227427385381	0.0817627686944657
Merged-chr12-85388720-3	chr12	85388183	85389183	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13966.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.85749489061101	5.76265894572605	5.92348633458229	5.80294561944172	5.7581353592242	5.50611970073575	-0.253154008187448	0.420967692740477	0.790055029266275
Merged-chr5-122698822-4	chr5	122698331	122699331	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8713.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.72618562938998	6.62524266482997	5.89185614993129	5.54724203562996	5.08846072791485	5.49519986003291	-1.92454583840177	2.13871649753027e-07	1.38978806113272e-05
Merged-chr8-77482114-3	chr8	77481600	77482600	+	727.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-34956.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.03020604331415	2.70738288822597	2.87008531960509	2.58584891261294	2.59934805672941	2.5621549724376	-1.62720351175999	0.0391051099645115	0.245171594457532
Merged-chr8-120719162-2	chr8	120718662	120719662	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-17196.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.7751824239038	5.67126349439148	5.51685772532523	5.62395952835641	5.65175214339834	5.10484551691432	-0.307953387877782	0.391196339189421	0.770214029510808
Merged-chr1-120264448-2	chr1	120263948	120264948	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	832.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	3.66605003766484	3.59962601650811	3.55394882467145	3.7467589987131	3.60574863877303	3.73141443861043	0.283807572995521	0.6036798271628	0.882779111121936
Merged-chr11-51677938-4	chr11	51677445	51678445	+	969.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	10689.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	3.89737721677284	3.84695065598064	3.98100808609077	3.94341935771618	3.89296489236978	3.74473816316371	-0.11821803068659	0.817463642383265	0.956767881392089
Merged-chr5-110912185-2	chr5	110911685	110912685	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	32382.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	4.54060595361952	4.61366054780914	4.50319950396922	4.94501963623644	4.74982369309276	4.57150371635751	0.503597066918708	0.226906828473622	0.621890618706186
Merged-chr18-55204241-2	chr18	55203725	55204725	+	668.0	f0_balb.idr|f1_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-211634.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.64892554755978	3.98821988040214	3.73262325212332	3.10609440990602	3.00557436753116	3.37136645154622	-2.69258204267935	8.65651827527278e-05	0.00251762171495595
Merged-chr3-116599218-2	chr3	116598718	116599718	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	B4A|SINE|B4	4260.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	2.90266847648769	2.88216757286971	2.68084518367385	2.85060639473268	2.76923505734654	3.17422588233503	0.523055607372565	0.482014259634226	0.825287168762873
Merged-chr14-56811151-4	chr14	56810612	56811612	+	956.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152252)	promoter-TSS (NR_152252)	352.0	NM_001253753	219105.0	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	6.3153000042717	6.31218036096637	6.26414170531854	6.18745258828168	5.94489247963157	6.15964707711359	-0.345135411665336	0.222343566372524	0.617268232708026
Merged-chr11-69989960-2	chr11	69989460	69990460	+	787.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026017, intron 7 of 7)	intron (NM_026017, intron 7 of 7)	-1410.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	3.99015115315117	3.67408737637667	4.40831938536101	3.99896147640966	3.94959773201327	4.39682114555357	0.206320758149969	0.71357018591698	0.92557476402444
Merged-chr10-118042845-3	chr10	118042344	118043344	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-98943.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.06881125547547	3.96015895448461	4.04051115602064	3.28524057725637	3.11921269058998	3.44277741888826	-2.96119168398926	5.24244921899872e-06	0.00023080090720341
Merged-chr11-105989494-2	chr11	105988994	105989994	+	800.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207624, exon 25 of 25)	3' UTR (NM_207624, exon 25 of 25)	-3800.0	NR_104047	100379610.0	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	-	predicted gene 11651	ncRNA	2.4548662790713	2.27299457123012	2.48021131038325	2.48111080497482	2.4023753502471	2.79617487388178	0.969976223285421	0.245245387483613	1
Merged-chr13-54580428-2	chr13	54579928	54580928	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 3 of 3)	intron (NM_019968, intron 3 of 3)	5415.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	2.7833216361345	2.74227054025536	2.72692887107414	3.03173436567455	2.87354474154223	2.92698920913639	0.971329917643041	0.171772823587158	0.550097814813575
Merged-chr9-61368560-4	chr9	61368070	61369070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3796.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.71061025729471	3.76086481837268	3.63138593949518	3.91684163175974	3.69443848025282	3.80887636915686	0.331336203672247	0.535319578589748	0.853511885485043
Merged-chr1-55053229-4	chr1	55052738	55053738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	CpG	468.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	8.55024244410929	8.64090272637845	7.89402900854118	8.42503786834335	8.50978846108762	8.03165246514873	-0.093093730042113	0.741924764290149	0.935046573868423
Merged-chr11-69662312-1	chr11	69661812	69662812	+	1000.0	f0_c57.idr	promoter-TSS (NR_035455)	promoter-TSS (NR_035455)	337.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	7.70067770739725	7.59471736711858	7.58305718805458	7.70076177004625	7.89174920567298	7.46691659672316	0.11410090813168	0.630838089714627	0.894912420650784
Merged-chr14-31021675-2	chr14	31021175	31022175	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 1 of 30)	B4A|SINE|B4	1970.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	3.04513876029947	2.8232121398587	3.13000732814318	2.93195739857899	3.0679352201533	3.65738631538581	1.04554649881229	0.154624206837388	0.523901417156339
Merged-chr14-51164536-4	chr14	51164031	51165031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2271.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	5.14522021975444	4.68005807375493	5.33496067532332	5.52590097378394	5.54401386693327	6.0662002025038	1.27600079821234	0.00165934681607533	0.0267527475047463
Merged-chr7-16042118-1	chr7	16041618	16042618	+	580.0	f1_c57bl6.idr	Intergenic	Intergenic	-29727.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	2.97965683779416	2.61508639113847	2.94969819249672	2.65126319582408	2.47660680436705	2.45233054694999	-1.86859788023511	0.0259745641602858	0.191112524064821
Merged-chr19-8819432-4	chr19	8818952	8819952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	51.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	7.18649744592908	7.35356468845476	7.52645616122232	7.39797827233999	7.66394729314929	7.2753991934105	0.157813074006388	0.53215868426268	0.851971173271146
Merged-chr5-24453038-4	chr5	24452557	24453557	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	880.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	5.99506191661852	6.23402908033698	6.45251794305482	5.94774347667253	6.13708662869672	5.84653277212263	-0.407933874831167	0.190219702325326	0.576415783207171
Merged-chr8-56312391-1	chr8	56311891	56312891	+	989.0	f1_balb.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	17839.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.24891237360095	5.02743837105999	5.17915720361865	5.13415663826078	4.91264460427728	5.42200142008309	0.0105949325901098	0.977903331021121	0.994994154947079
Merged-chr1-36001098-4	chr1	36000574	36001574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-67326.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.78187502381025	3.9900574551962	3.77060508038544	4.01618866585231	3.9661409061762	4.13617200280083	0.543992014816584	0.286331335454013	0.683634696330879
Merged-chr4-47314125-4	chr4	47313644	47314644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009928)	TTS (NM_009928)	-39078.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.2322735789775	6.40048665811758	6.16114798777635	6.08995878213809	6.00558798709064	6.26242496780503	-0.270940239879528	0.346800309607168	0.735006911502857
Merged-chr10-70201744-4	chr10	70201214	70202214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	5.87933954803484	6.10671949059	5.53396256630744	6.14130932047487	6.37016818837177	6.10287467686612	0.582545283109797	0.0742817025104961	0.358496137259634
Merged-chr5-8353247-2	chr5	8352747	8353747	+	629.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	14913.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	3.18321898604539	2.99023693685575	3.05557007046701	2.96318377184784	2.79192772678463	3.12770910839919	-0.550753721507339	0.426821573730657	0.793904265858508
Merged-chr2-151973485-4	chr2	151972982	151973982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-88.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	5.73506446247798	5.59252388465172	5.23935888881008	5.65369638631915	5.33477121067309	5.1231948434488	-0.293044237449764	0.434866864139639	0.798660466628143
Merged-chr11-116870704-2	chr11	116870204	116871204	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	PB1D11|SINE|Alu	16704.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	3.81241192301085	3.9306394201437	3.71495656415138	3.58393440536802	3.77820221609428	3.93563055776029	-0.185654684140247	0.731348287464425	0.931363959034745
Merged-chr2-71327961-4	chr2	71327487	71328487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	39567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	7.77097274383417	7.79865373880113	7.70926455068459	7.78497454596315	8.16864253353239	7.84319247332377	0.269989368289528	0.245926433081795	0.642986540263
Merged-chr14-57399039-4	chr14	57398552	57399552	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-569.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	6.28591986853357	6.72886337476373	6.67677169477563	6.25162601034592	6.52449083713119	6.48679038012802	-0.23968851145465	0.411648835590808	0.784017205335022
Merged-chr8-94634250-4	chr8	94633746	94634746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359093, intron 6 of 14)	intron (NM_001359093, intron 6 of 14)	32305.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	4.36387295497814	3.9289269885856	3.79032091940928	4.05347856769918	4.17704912604298	3.97152926432951	0.039089261713041	0.941702001909886	0.987044948326294
Merged-chr15-95792479-4	chr15	95791983	95792983	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	1640.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	8.30172838541221	8.37668555029361	7.66111368369263	8.54322554324812	8.53364386867895	8.09516520275315	0.351266836156952	0.212054780893804	0.604420229358776
Merged-chr16-93607869-4	chr16	93607385	93608385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007620)	promoter-TSS (NM_007620)	48.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	6.45763328475743	6.5383187817771	6.24918045670447	6.75248203788587	6.67503613325808	6.28853924699868	0.271088346257224	0.347844612332686	0.735838066379676
Merged-chr19-17166609-4	chr19	17166149	17167149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	ORR1F|LTR|ERVL-MaLR	172856.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.91173458176194	6.90370672596608	6.75334904812225	6.89995634302718	7.13585694297227	6.94648595852635	0.215745277352622	0.388442866611484	0.768298605743146
Merged-chr17-67317537-2	chr17	67317037	67318037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	36922.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.41013306899806	4.49886948230588	4.15343667044174	4.28766649142744	4.16266904163342	4.07169205860454	-0.515009321498543	0.274956219936221	0.672331257228241
Merged-chr9-65364366-3	chr9	65363865	65364865	+	970.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	3305.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	4.23345931859916	4.20356001316772	3.97118693931069	3.34451318167855	3.43707067520954	3.61998347399231	-2.36091871299727	5.0779032848732e-05	0.00160228356665806
Merged-chr5-136170214-4	chr5	136169721	136170721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	intron (NM_178751, intron 1 of 2)	435.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	7.40343769711945	6.96187686294438	7.06311171088422	7.12344377262327	6.76675763342325	6.48396942850955	-0.509793624837517	0.0874602693168282	0.392122101908219
Merged-chr5-121849626-2	chr5	121849126	121850126	+	780.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359950, intron 1 of 2)	B1_Mus2|SINE|Alu	629.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	4.71446502928391	4.06446603972792	4.50770669054042	4.79867282132978	4.20106604197462	4.10552765973651	-0.120775170004876	0.822273368089811	0.958041123079214
Merged-chr17-48557996-4	chr17	48557496	48558496	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103095.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	3.67647422126687	3.6120687437519	3.86381933258841	3.91016729364221	3.62873528332091	4.02540782736428	0.458441436099822	0.402856921782414	0.778361555465358
Merged-chr15-73643749-2	chr15	73643249	73644249	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19005.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.15593177695805	5.55077277000608	5.37968972250736	5.59724474511427	5.72761893531749	5.38067781377483	0.404577589763471	0.251342033029416	0.648833216107931
Merged-chr11-26639675-4	chr11	26639187	26640187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-45767.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.41570775462066	6.47316160908091	6.34216832520289	6.85832632096975	6.93235593084423	6.67538833191489	0.662768748470118	0.0111981137709204	0.108907955173408
Merged-chr1-155812275-2	chr1	155811775	155812775	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	624.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	4.97972501913537	4.93532046842254	5.00327578643464	4.44605426442269	3.99750750605607	4.41316511371594	-1.68477744828083	0.000169932300002739	0.00438810753905051
Merged-chr18-46958996-4	chr18	46958509	46959509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 1 of 6)	CpG	133.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	6.24389502669836	6.60806319855748	6.60448550835567	6.37464592506125	6.20708057441742	6.09350610306555	-0.429086694166695	0.142582224989415	0.504013839879318
Merged-chr2-166744658-4	chr2	166744161	166745161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30829.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.10133085379561	3.93614660525315	3.90866445118429	4.21264922021547	4.2134505880402	3.97958019446073	0.456411291972643	0.354603371004203	0.7417627154336
Merged-chr5-139024659-4	chr5	139024158	139025158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29705.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	7.1635272903405	7.00485675647657	7.08004211456518	7.11774954994536	7.18342739606529	6.94784245922704	0.0142719398222554	0.95309109354142	0.989359300570295
Merged-chr6-140609759-4	chr6	140609245	140610245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-12918.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.64393080661339	6.60336637341208	6.4412099285646	6.93410263157681	7.14823044078651	6.50134066646131	0.518484409194539	0.0751552356795656	0.361015867129967
Merged-chr17-73970557-4	chr17	73970077	73971077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20381.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.1557569334686	6.23654428652196	6.13916008741468	6.48036245460057	6.47957509599504	6.54606456100408	0.525499549468791	0.0505802395103729	0.286402216344274
Merged-chr19-43815965-7	chr19	43815398	43816398	+	910.003967	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 16 of 31)	PB1D11|SINE|Alu	-22905.0	NR_033472	100038628.0	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	-	predicted gene 10768	ncRNA	4.14718888539958	3.87189710162988	4.08745612237854	4.36257370978861	4.48079677523353	4.50989824008418	1.13073237606499	0.0162045330302706	0.140058874455464
Merged-chr5-18006557-3	chr5	18006049	18007049	+	755.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	43979.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	5.91344659293909	6.20952550085022	6.27972704060828	6.18404416314921	6.4130425458413	6.13374928936974	0.201713694493111	0.500429711743818	0.834978949366358
Merged-chr10-88503630-2	chr10	88503130	88504130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146690, exon 1 of 9)	exon (NM_001146690, exon 1 of 9)	340.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	4.77133844490781	4.80293425741826	4.68355180736945	4.53219467372079	4.53847848869067	4.35920318173475	-0.650948885128125	0.118554444510545	0.460020435498666
Merged-chr2-6258154-3	chr2	6257656	6258656	+	709.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45162.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	5.84856597591637	6.00172729584561	6.04072217527477	5.56698545681543	5.66500513749824	5.35791676114303	-0.750440612393406	0.0196538990857589	0.159547476597837
Merged-chr4-88727438-4	chr4	88726944	88727944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.53325543401901	4.38147405687303	4.4013322008268	4.90256496333614	4.49019475068871	5.16144262581031	1.00708941298085	0.0266948420045449	0.194383863963785
Merged-chr4-155235865-2	chr4	155235365	155236365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13330.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.79600559046362	7.96736696979144	7.84683342128228	7.65382272360566	7.7910475695181	7.7792212003995	-0.187463670071948	0.3892949594504	0.769015431167891
Merged-chr17-33779002-2	chr17	33778515	33779515	+	765.666626	f0_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2560.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	5.38750663344688	5.2027275884135	5.07017297804239	4.53855061335897	4.56998018245785	4.99700542416683	-1.15834727702891	0.00428900191216787	0.0548285867426124
Merged-chr10-96738177-4	chr10	96737670	96738670	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121169.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.33804948681596	3.38505596541725	3.3991267275782	3.44215675752641	3.28790720949418	3.41487619550498	0.0244915551874752	0.967038172270338	0.992443230448091
Merged-chr4-80311302-4	chr4	80310799	80311799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-522914.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	5.08517625261415	5.39023137056208	5.39942340517828	5.22060398229291	5.47582230907142	5.10681731490302	-0.0126640188215052	0.9726039245763	0.993868590220018
Merged-chr16-31837626-4	chr16	31837130	31838130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 12 of 22)	intron (NM_001357281, intron 12 of 22)	-41180.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	7.81083522319024	7.64373991951812	7.34420636356197	7.70318491868705	7.88273950262023	7.19008602589674	0.0217805276089136	0.939024489456258	0.986603666382121
Merged-chr11-72205632-4	chr11	72205157	72206157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1825.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	6.43812607455572	6.40320941601292	6.18282866265078	6.65016287238296	6.7929221294151	6.17601067793415	0.36640482516686	0.228533606281513	0.623715045639993
Merged-chr7-45526296-4	chr7	45525798	45526798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	-30.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	8.609016262168	8.80804272623568	8.37782422519894	8.33763325725237	8.59294223436257	8.20370835323129	-0.306269621098999	0.197409829018187	0.585377298089801
Merged-chr8-123036128-4	chr8	123035399	123036399	+	764.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	B3|SINE|B2	6385.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.80070717439629	4.62352737355066	4.54472633835349	4.48481429574897	4.66023235967174	4.38878312670031	-0.336283854211152	0.433938852081402	0.798089916537495
Merged-chr7-141458911-2	chr7	141458411	141459411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163689, exon 7 of 9)	exon (NM_001163689, exon 7 of 9)	-2183.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	3.4283506147578	3.31250922082244	3.64273438667859	3.43974576706237	3.16442965245878	3.5616098472915	-0.267341765014867	0.667331960115599	0.908713240361683
Merged-chr11-116411940-2	chr11	116411440	116412440	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	intron (NM_027258, intron 1 of 18)	1092.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.5751237374477	3.95520880639246	3.46138424676651	3.9903490912212	4.04374749702388	4.11976343657249	1.11323865515629	0.0534549404013662	0.296475988651669
Merged-chr13-69528606-2	chr13	69528134	69529134	+	671.5	f0_balb.idr|f1_balb.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	5230.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.04166107753843	3.14379101196038	3.30363688065375	3.22174842961505	3.15123059465164	3.26436771489743	0.206503471438676	0.745470352143869	0.936177103310491
Merged-chr10-12868295-4	chr10	12867800	12868800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6565.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	6.31966276869537	6.05200271280021	5.38721381210852	6.42355733356293	6.58538206460477	5.75226054733914	0.548465637749993	0.402492591705627	0.778073172656223
Merged-chr15-36727896-7	chr15	36727353	36728353	+	931.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	63079.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	2.79040799745194	2.64762350589831	3.05757571993481	2.80129941263179	2.69300847143521	2.90212872427455	-0.19588161573966	0.791713498399251	0.949809355728628
Merged-chr18-46859680-3	chr18	46859178	46860178	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029008, intron 1 of 19)	intron (NM_029008, intron 1 of 19)	9639.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	2.43115276088392	2.39020664024566	2.50726638391932	2.23575253583746	2.25641286423228	2.39184104440003	-0.991172784948825	0.238060404887367	1
Merged-chr19-36932814-4	chr19	36932318	36933318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	6739.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	5.89969575667791	6.03882880397324	6.18633453035059	6.77203519527417	7.00428257316977	6.50346270628431	1.21886369676787	2.92131318699787e-05	0.00100527968429991
Merged-chr19-32226033-2	chr19	32225533	32226533	+	675.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	ORR1B2|LTR|ERVL-MaLR	-15020.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.23518517562285	3.25187523402108	3.2265216983304	3.02505057631631	2.86105294394084	3.35219101058295	-0.65395235296236	0.339141107359308	0.729057813336113
Merged-chr11-116130619-4	chr11	116130115	116131115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178802, exon 1 of 6)	exon (NM_178802, exon 1 of 6)	513.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	8.99949271100923	9.4429051600317	8.80230269376496	8.74751426032149	9.27530242186585	8.86611363462345	-0.173607368598281	0.516802080122117	0.84431573428183
Merged-chr7-90034108-4	chr7	90033592	90034592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4933.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.2634780503931	8.42961497878531	8.14523584318233	8.05994774632765	8.41425875552486	7.94151942795105	-0.175506518720439	0.466883621363322	0.817672799275942
Merged-chr16-10480628-2	chr16	10480128	10481128	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	556.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.71332748098238	4.46052035361249	4.7376964686998	4.84270311370243	4.92844523407537	5.29586707232619	0.877393234369361	0.0344786067773022	0.227491548071189
Merged-chr18-82872323-3	chr18	82871837	82872837	+	693.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16440.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.26492119569847	4.18034173047068	4.42618297642591	4.02529225156794	4.07942637428275	4.32770901102553	-0.401665640093698	0.397306680681141	0.774186958204669
Merged-chr6-24663652-3	chr6	24663093	24664093	+	800.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	1402.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	6.81207800499822	6.82069569540313	6.67939286029572	6.48994251873917	6.58662020902804	6.53491421427094	-0.376165250071759	0.140050484173573	0.500144629900091
Merged-chr1-80670619-4	chr1	80670151	80671151	+	804.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	MTE2a|LTR|ERVL-MaLR	-5299.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.79941786763829	5.03777925357236	4.85266446446102	5.09207660148108	5.14081578873751	4.7999098235202	0.271049771657479	0.487451620888559	0.828445729506224
Merged-chr1-58719680-2	chr1	58719180	58720180	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6394.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.56065451034956	5.61217102351332	5.98336986713652	5.410904505118	5.5231973926275	5.67057891089239	-0.346611869319446	0.306229270163513	0.702393392831977
Merged-chr11-9373326-4	chr11	9372840	9373840	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178259, exon 30 of 62)	exon (NM_178259, exon 30 of 62)	181398.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.37531093355179	3.63327040858674	3.79420438550096	3.65233032259279	3.31372024005538	3.61449626085653	-0.27074233930215	0.652620514637204	0.902986290245403
Merged-chr4-19850820-3	chr4	19850214	19851214	+	833.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	31987.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	5.29311767994292	5.1679585883475	4.80873745678038	4.91880523889654	4.93640890902491	4.95376760640831	-0.389604706120594	0.31530230785482	0.709692649130764
Merged-chr1-93635136-6	chr1	93634607	93635607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021537, intron 2 of 11)	CpG	620.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	6.24063308134139	6.49721763941111	5.88260684057377	6.0460821009189	5.8860630201752	5.96980753009378	-0.473892126775902	0.135621542674438	0.492334423579015
Merged-chr13-110684623-4	chr13	110684122	110685122	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218877.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	3.46811816188266	3.47309253669182	3.39235171750641	3.57650086273178	3.07568208422462	3.228585358005	-0.522203569345482	0.418332647911495	0.788588731807313
Merged-chr3-51196524-2	chr3	51196024	51197024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27923.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.78863352152885	5.46760423156031	5.565908223117	5.88685750765065	5.26636580646629	5.95239721123004	0.205048625907068	0.582787796999326	0.873826743013405
Merged-chr18-12955793-4	chr18	12955328	12956328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13987.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	7.36766798826992	7.80968065660154	7.63516336772088	7.64512728269062	7.57892771761769	7.3439434684986	-0.122631198856238	0.625321852218515	0.89246806537449
Merged-chr5-65107451-4	chr5	65106985	65107985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347355)	promoter-TSS (NM_001347355)	-83.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	7.99064546177647	7.58075707188503	7.50404389136007	8.00158137734138	7.695696123413	7.89447454869187	0.217455808005912	0.393101403499499	0.771490835516741
Merged-chr12-83596566-2	chr12	83596066	83597066	+	891.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359167, exon 2 of 13)	5' UTR (NM_001359167, exon 2 of 13)	656.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	6.19209705263303	6.16857637913277	6.42009892724906	6.42281773825403	6.22051604359018	5.90206931433682	-0.0828980877996358	0.78578073609962	0.948164689606319
Merged-chr17-78891227-4	chr17	78890740	78891740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 4 of 6)	MTE2a|LTR|ERVL-MaLR	-8668.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	5.3369180576273	5.13059731937478	5.32667388281815	5.46121751327945	5.2983210488251	5.63904080419359	0.39398554701059	0.261085079847301	0.658630473017568
Merged-chr15-57926144-4	chr15	57925620	57926620	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	RSINE1|SINE|B4	13921.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.31778327872793	7.20178143698002	6.84226566688336	7.33580267728537	7.86636000789971	7.17370111477172	0.53436449633739	0.0736139955611032	0.356555873022194
Merged-chr14-45047471-5	chr14	45046952	45047952	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	59341.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.7425638821912	4.59285474690739	4.92876416561108	4.8859622733367	4.56297047703906	4.95877470252839	0.114842016881234	0.783806864711547	0.947317223933394
Merged-chr1-91045612-2	chr1	91045112	91046112	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7832.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.60164627923057	5.34386424345962	5.24470540349609	5.46827928747015	5.54770292677913	5.52679235953837	0.193747332959879	0.569412448065849	0.8688875602138
Merged-chr19-41774617-1	chr19	41774117	41775117	+	1000.0	f0_c57.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27467.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	6.81821128867968	6.96147127252319	6.69878067491741	7.74349918093765	7.89141096877309	7.26316992193417	1.23838071966117	6.35040934523519e-06	0.000271673450281917
Merged-chr6-128843788-4	chr6	128843262	128844262	+	999.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17447.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	6.54892481495916	6.45293370035131	6.42422177216264	6.2490799474973	6.71647325790726	6.5200131306571	0.0614408550781817	0.829017734740366	0.959932344512127
Merged-chr11-84306300-2	chr11	84305800	84306800	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 33 of 53)	intron (NM_133360, intron 33 of 53)	110862.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	2.20423877261727	2.50658204328202	2.27881498552803	2.41732047703194	2.47557660966644	2.55015475911374	0.878546722180793	0.309320773921983	1
Merged-chr6-59209439-4	chr6	59208957	59209957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081145, exon 2 of 2)	5' UTR (NM_001081145, exon 2 of 2)	587.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	8.46849123357868	8.6466213050629	8.02682936731293	8.17041465890338	8.44825030529582	7.93981231184794	-0.283649147280944	0.289142078924544	0.686633011876864
Merged-chr6-100143947-4	chr6	100143458	100144458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143400.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.61082871387326	4.56850024948545	4.80278702060657	4.50657416784713	4.2618918123762	4.68494169808079	-0.429006182462244	0.327989797356773	0.720172556707989
Merged-chr1-34841975-4	chr1	34841472	34842472	+	642.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	1078.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	7.32966901250068	7.60157697819805	7.27138887784023	7.66948558955149	8.01078949787879	7.03592168962296	0.33889608857564	0.27660592258112	0.674003097641857
Merged-chr2-163417787-2	chr2	163417287	163418287	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	RSINE1|SINE|B4	1683.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	4.19860016492464	3.82172962817776	4.28344327401361	4.31001554175334	4.45928106674189	4.43582129075541	0.800462397765187	0.099562350607863	0.42074068407207
Merged-chr11-79251775-2	chr11	79251275	79252275	+	775.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	RSINE1|SINE|B4	2920.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.71247380806228	5.50653032714757	4.90683197644747	5.764158524271	5.79443857894386	5.21820276939975	0.367131548724824	0.38218542424901	0.763819347060188
Merged-chr16-24778577-4	chr16	24778077	24779077	+	768.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	56722.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.42869664484593	3.31559681623526	3.26365407691034	3.30493994109764	3.2916584124881	3.50146849447311	0.0890267712337826	0.883258338010671	0.973347392063704
Merged-chr13-113500781-4	chr13	113500281	113501281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	2063.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.75792835240151	4.59042104310352	5.0109573264042	4.77938440899675	5.03545255079288	4.66725898208692	0.137164543035201	0.743420250156058	0.935615824630138
Merged-chr10-118862375-2	chr10	118861875	118862875	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	6528.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.11544982241917	5.16029987026993	5.35501216063181	5.15216520635594	5.14197254479296	4.95416678050952	-0.234728732589236	0.519124975501775	0.845629761325035
Merged-chr13-100104043-4	chr13	100103517	100104517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081061)	promoter-TSS (NM_001081061)	53.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	6.42241023838084	6.57501980992324	6.39255328166874	6.6310559651532	6.67029725640633	6.57961346326318	0.255715495403931	0.328113215883234	0.7203113757308
Merged-chr14-31664353-3	chr14	31663858	31664858	+	660.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025295, intron 2 of 3)	LTR37B|LTR|ERV1	23301.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	1.96469174364478	2.03521603725035	2.22561929633228	1.90199745877059	1.93480971022649	1.83161865161078	-1.52597213067298	0.1312502581776	1
Merged-chr5-117114387-2	chr5	117113887	117114887	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	RMER6A|LTR|ERVK	1606.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	3.67073818810037	3.4977575425788	3.87430426158611	3.77357313649305	3.70161725417978	3.89526101644202	0.352678865351265	0.521189418339306	0.84693755135567
Merged-chr8-14897321-3	chr8	14896806	14897806	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012000, exon 3 of 3)	3' UTR (NM_012000, exon 3 of 3)	8770.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.93709574360062	2.7954387129969	3.00118488797647	2.85317738641519	2.62201828243404	3.07300134856756	-0.271485111707702	0.713979884342033	0.925656547968876
Merged-chr13-37679594-2	chr13	37679094	37680094	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-146444.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.44563454046409	6.40126039950446	6.20092058453132	6.496085335943	6.29833344206196	6.43998866759518	0.0791340489765611	0.774278354840766	0.94439333294121
Merged-chr4-10973785-4	chr4	10973287	10974287	+	658.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33832.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	2.96695829665582	3.16856309640257	3.09937744742638	3.49085052032242	3.36196328618999	3.232276030889	1.23281132633883	0.058219840623747	0.311774777874935
Merged-chr4-13192323-4	chr4	13191713	13192713	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	285376.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	3.8481525788276	3.83666530100699	3.6777534753947	3.6306925555411	3.76345307581283	3.69461068546194	-0.31196496194518	0.560687531098717	0.865261302076164
Merged-chr9-65676519-4	chr9	65676035	65677035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-13.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.95947141154438	5.8051447474236	5.80625891309615	6.0630842313128	6.09565363808575	5.49147413594915	0.116303994941043	0.729758182131753	0.930635866770147
Merged-chr13-51399799-2	chr13	51399299	51400299	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8819.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	4.50099804842661	4.31412925030287	4.615294465504	4.56889843807733	4.11234581363596	4.56412390738696	-0.13596876461158	0.771663171356845	0.943614978016208
Merged-chr7-114193129-2	chr7	114192629	114193629	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	61551.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	4.00360686618852	3.92944857503364	3.9530934954676	4.23442944094152	4.1470288912518	4.02315857264125	0.521858694537517	0.282019419415854	0.679908771156903
Merged-chr10-20666757-4	chr10	20666253	20667253	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	58325.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.83097257545231	4.99064927038889	5.01441233366864	4.49266333897705	4.83441386512041	4.71356585521379	-0.56702820200873	0.163123109144135	0.536763857542024
Merged-chr14-58322771-3	chr14	58322221	58323221	+	739.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250035.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.72710987400761	4.72205776543309	5.15281056230979	4.97064241629407	4.8866293267329	4.88045264004947	0.0985727269914291	0.806124343785887	0.954102910475772
Merged-chr16-4878313-10	chr16	4877858	4878858	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	1493.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	6.7433867871633	7.05268019505127	7.16663352793738	7.36076828478467	7.57458414965649	7.2243138526087	0.610401924559654	0.0197866295334807	0.160289878192576
Merged-chr6-97419486-2	chr6	97418986	97419986	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39800.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.87736301403996	4.77542432007264	5.02515353237216	4.59537634925729	4.49577355562405	4.88636299910155	-0.539262934870548	0.191265184647415	0.577843643976488
Merged-chr1-120019650-4	chr1	120019133	120020133	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 1 of 13)	intron (NM_001012322, intron 1 of 13)	12653.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	5.05778965506803	5.08358762988434	4.98984568288799	5.18296415418631	5.33974412447927	5.09141621244684	0.353095907473801	0.328666233710743	0.720880314701793
Merged-chr3-138114366-1	chr3	138113866	138114866	+	760.0	f0_balb.idr	intron (NM_001355052, intron 11 of 21)	intron (NM_001355052, intron 11 of 21)	17287.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	3.41802069199144	3.2559241548235	3.26223910896793	2.85423200189957	2.69433123677224	2.91546243157585	-2.57177451766543	0.000691016530206057	0.0135417106560023
Merged-chr5-31154322-4	chr5	31153813	31154813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008622)	promoter-TSS (NM_008622)	-62.0	NM_008622	17527.0	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	5.2634660115378	5.63758888832076	5.35439032599724	5.19445396240118	5.59554092518763	5.11399552850459	-0.19193588910329	0.612574247289277	0.886854542374747
Merged-chr13-43171535-4	chr13	43171081	43172081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025935)	promoter-TSS (NM_025935)	-80.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	6.37387027624504	6.79593774292193	6.60069134682455	6.37859848083723	6.31988281517766	6.27281928735356	-0.450113096006489	0.110690906393037	0.444642864042771
Merged-chr9-40392558-4	chr9	40392021	40393021	+	986.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-16104.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.61370840413833	4.53478692602771	4.67557147461664	4.39282456016862	4.13380143860301	4.54686849590632	-0.634377885569554	0.155228810968634	0.524852771239834
Merged-chr2-38287296-4	chr2	38286795	38287795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146122)	promoter-TSS (NM_146122)	89.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	7.81424901601553	8.03426577798613	7.79493961298295	7.5653025035294	7.5443160529414	7.39984151334543	-0.549145783203884	0.0154892436408206	0.13570906442723
Merged-chr7-101895288-2	chr7	101894788	101895788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291352, intron 1 of 5)	B4A|SINE|B4	-1043.0	NM_001291348	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	4.45869409764332	4.12615053680938	4.76677807236466	4.24174561763216	4.60911508095239	4.86485657737546	0.301227058975921	0.544075466023135	0.857551302506722
Merged-chr9-61977478-4	chr9	61977033	61978033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	MER20|DNA|hAT-Charlie	-30734.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	6.4968003521217	6.34759801509337	6.58548690620486	6.60876576348998	6.70912112957557	6.48769447362077	0.221292148401839	0.407648568740891	0.781792290496971
Merged-chr1-106815482-4	chr1	106815010	106816010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18785.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	6.51673562500062	6.50991702395228	6.4059387053126	6.10659174300705	5.90601414202208	6.16915776798489	-0.711998046076396	0.0109677666487259	0.10721404221184
Merged-chr7-29908648-4	chr7	29908153	29909153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243908, intron 1 of 4)	intron (NM_001243908, intron 1 of 4)	136.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	7.11661292499922	6.99665796728712	7.13392931426451	7.13684482439863	7.035704687677	6.75373848604025	-0.133592992219348	0.597976340809702	0.880511769533228
Merged-chr2-69017125-2	chr2	69016620	69017620	+	640.0	f0_balb.idr|f0_c57.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-118680.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	2.68581655175692	2.77587765696576	3.05299214116415	2.8873890379118	2.77414434009357	2.7065399675219	-0.245952639603491	0.739635787666711	0.934245371298156
Merged-chr12-70473263-2	chr12	70472763	70473763	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	B1_Mus2|SINE|Alu	20109.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.15954670733251	5.3053272640843	5.777503723327	5.43852815974207	5.73546560757084	5.66695657051027	0.368961006758227	0.315388146238145	0.709692649130764
Merged-chr11-17159970-4	chr11	17159457	17160457	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	CpG	659.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	7.72427832589798	8.17222220254715	8.08254121169967	7.88723590787975	8.00804664937705	7.75006825395991	-0.165529016509631	0.494073039026653	0.831815174927983
Merged-chr11-114669748-2	chr11	114669248	114670248	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	intron (NM_001048058, intron 2 of 3)	967.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	5.53748061947068	5.44541590506302	5.4670300815065	5.61478442931539	5.88070502698146	5.50041372212358	0.381543864377143	0.250743049811184	0.648153521953385
Merged-chr9-38727685-1	chr9	38727185	38728185	+	540.0	f1_balb.idr	intron (NM_001145957, intron 7 of 18)	RMER17C|LTR|ERVK	9417.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	4.94212344064963	5.26068365755472	5.23671445558394	5.28353546871323	5.45541864548046	5.02409742954406	0.258142999855325	0.494217631647971	0.831840373294044
Merged-chr15-99972781-4	chr15	99972245	99973245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-35.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	8.70261926840739	8.78871228550294	8.47824824362021	8.46745271477987	8.69566477147657	8.24759051896059	-0.244409362679993	0.292368307952356	0.689610289086364
Merged-chr3-28050232-4	chr3	28049748	28050748	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 11 of 25)	intron (NM_008875, intron 11 of 25)	66077.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.39722284409606	3.49098102970713	3.56740328633723	3.4652453168962	3.47509863493352	3.36344979173467	-0.16639479637067	0.774888295572312	0.944517829695789
Merged-chr17-55877380-2	chr17	55876880	55877880	+	690.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_144546, intron 1 of 3)	ORR1B1|LTR|ERVL-MaLR	1573.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	4.4585605094091	4.78868129225881	4.87336235702981	4.57698051624366	4.76016107294663	5.00497075473857	0.166667117801546	0.697440998659599	0.919959169598449
Merged-chr8-10832165-6	chr8	10831706	10832706	+	944.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	50248.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.57301107694989	5.50573068561474	5.08272793907134	5.34611503370601	5.20834271880222	4.99760193233236	-0.439045414410833	0.244181319328305	0.641434535959679
Merged-chr6-108753784-3	chr6	108753326	108754326	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-29233.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.6816576311891	3.62610339545504	3.42189430902387	3.21671655854164	3.23635530471582	3.25921856811013	-1.37711232393373	0.024813193421278	0.186217103850409
Merged-chr13-42527846-2	chr13	42527346	42528346	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152953.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	7.48746706487231	7.38203541382052	6.87547440140015	7.8260823354178	8.09890178022112	7.14400021075855	0.692590454147065	0.0347015665693676	0.228367457756827
Merged-chr12-104742452-4	chr12	104741957	104742957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	9495.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	3.48501263491699	3.59099896126544	3.62736211064759	3.76638587366951	3.64221671227927	3.94369234528181	0.733222722555115	0.18458636868733	0.568327939527673
Merged-chr1-140180895-1	chr1	140180395	140181395	+	540.0	f0_balb.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	2516.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	4.56066131042659	4.34480470283591	4.94583545348904	4.63423833163643	4.63827790215202	5.04114596401595	0.343944965562666	0.449119916414972	0.807594795348397
Merged-chr3-104995898-4	chr3	104995357	104996357	+	858.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34148.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	5.50249188935167	5.46951136361572	5.68635257036499	5.57386973704251	5.44054612242775	5.47452675999079	-0.0986658248635715	0.763087902920131	0.941685351953643
Merged-chr1-36552152-2	chr1	36551652	36552652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 10 of 14)	intron (NM_001304329, intron 10 of 14)	-4900.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	2.85451596430233	2.89916132140731	3.12781205304699	2.91298552176447	2.56619557199625	3.03193122010818	-0.554639132836924	0.466592545709405	0.817586753758551
Merged-chr5-148994715-2	chr5	148994214	148995214	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102383, intron 1 of 1)	intron (NR_102383, intron 1 of 1)	500.0	NR_102383	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	3.69992232685457	3.96974627182761	3.92130825012063	3.62673965812967	3.57773696921303	3.63514278431822	-0.85826115624752	0.114836886694929	0.452465739350451
Merged-chr5-140841686-2	chr5	140841186	140842186	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11255.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	6.11821824201686	6.06981106246388	6.04929619623222	4.41911354469578	4.59860797464906	4.93776596759445	-2.93222748891298	1.88310497113123e-14	4.80642326496588e-12
Merged-chr16-13373167-4	chr16	13372663	13373663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	14742.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	5.16712945901499	5.2024647563805	4.86067247503351	4.89395935212255	4.91355158170718	4.76597962516827	-0.49921451405947	0.196157533342303	0.583940557712492
Merged-chr1-184484780-5	chr1	184484243	184485243	+	916.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72948.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.41455760387475	6.68864124683437	6.26793343954792	6.17496620950895	6.50010393416889	6.58713291276727	-0.0766100661423765	0.796707058967634	0.951484355174064
Merged-chr3-19198920-2	chr3	19198420	19199420	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	10625.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	5.43405313370446	5.57855803808069	5.4863419029171	6.03999541708291	5.94373675278125	5.55030592622552	0.676227344294858	0.0417195316616726	0.255437732928952
Merged-chr9-44435964-4	chr9	44435468	44436468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033469, exon 3 of 5)	exon (NM_001033469, exon 3 of 5)	4900.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	2.84114296248364	2.91410397958956	3.21457704016301	2.89894496347425	2.5885661043917	2.82938327671271	-1.09358766899912	0.147907528939125	0.51320168750122
Merged-chr1-10232431-4	chr1	10231877	10232877	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102430, exon 1 of 38)	exon (NM_001102430, exon 1 of 38)	293.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	6.17879285602271	5.49293349727228	6.07126827991376	6.4552739312057	5.61229933165167	6.13201899638306	0.281646763069203	0.470712350922591	0.819651214723595
Merged-chr3-37140770-3	chr3	37140287	37141287	+	968.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14833.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	4.1321749997573	3.95975800221896	4.64068101672366	3.87094565903078	3.82245822773625	4.20861485605982	-0.840393912480582	0.122308102822805	0.467779583548445
Merged-chr5-103719953-4	chr5	103719451	103720451	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34211.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.2824216621031	4.32216721501709	4.08438715352996	4.70375661962236	4.79627519134921	4.15721808602565	0.894384801918797	0.0676146129100251	0.340170307214304
Merged-chr14-47393533-3	chr14	47393062	47394062	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 15 of 18)	intron (NM_144553, intron 15 of 18)	19702.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.10456814853487	3.80606408120372	3.93471029890932	3.41619903972851	3.28198524952882	3.59693074647802	-1.88776649979512	0.00134807650263026	0.0227757867270778
Merged-chr17-37275475-2	chr17	37275017	37276017	+	690.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4901.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	5.38842883420817	5.61198639559911	6.06679618524356	5.79055111791496	6.18855533930595	6.28216063230336	0.694200100761043	0.0521552921526408	0.291845161360924
Merged-chr9-90266030-4	chr9	90265530	90266530	+	814.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	4739.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.76994336816382	5.84014069223831	5.72504696693245	6.13623220606146	6.03599777403118	5.67611888298682	0.339974754461901	0.28181696700681	0.679908771156903
Merged-chr7-5062244-4	chr7	5061749	5062749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133671, exon 1 of 12)	5' UTR (NM_133671, exon 1 of 12)	106.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	8.96061913668588	9.22883089583051	8.84436388802659	8.99347872918147	9.20258169810861	9.02624624607474	0.0737489108065412	0.733649171786098	0.932175155100531
Merged-chr4-55631331-4	chr4	55630808	55631808	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-98833.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.54716136761468	4.62721971660178	4.76097740962603	4.4991975346787	4.17475059012195	4.75353703458776	-0.392795629768739	0.388411047147011	0.768272194618311
Merged-chr5-121450096-4	chr5	121449611	121450611	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	2363.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	5.48026565301227	5.39087480595639	5.50370361906305	5.61173454584375	5.52850772894339	5.67493191586652	0.275731658859291	0.39332846031371	0.771515439837752
Merged-chr11-83272373-4	chr11	83271966	83272966	+	674.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	14260.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	4.54600938781766	4.52837773321855	4.55013526085837	4.36404387712231	4.90920056482988	4.65765792445154	0.316491113723092	0.473396669370415	0.82090428702971
Merged-chr8-53511780-4	chr8	53511296	53512296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205054)	promoter-TSS (NM_001205054)	94.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	6.72773287986445	7.22988623359522	6.77282359743379	6.94081520131687	6.96051026177262	6.73527343004524	-0.0787306555280172	0.779302417181709	0.945710994231145
Merged-chr4-47333734-4	chr4	47333230	47334230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19492.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.89951272902407	4.07181348659608	3.81211299440391	3.7957647453534	4.08310668166116	3.88274233659123	-0.0144834701920456	0.977864371005057	0.994975831622446
Merged-chr7-64344338-2	chr7	64343838	64344838	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	29757.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	3.26661354789786	3.73091663602676	3.73196277242425	3.80128485697086	3.4318417918638	4.07763346949038	0.653315776942048	0.302049774611726	0.698778259123434
Merged-chr15-50870924-4	chr15	50870429	50871429	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18120.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.26286850450343	7.22572643006161	6.78701824472665	6.5416456521224	6.8162246473277	6.71714861074867	-0.644742904049941	0.0190245348736126	0.15626786749887
Merged-chr5-34501030-4	chr5	34500525	34501525	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12954.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	6.12910863842073	5.9917682515183	6.11049921894002	6.302439956917	6.50214707331468	6.00989252296041	0.378105019405818	0.208202240689008	0.599041414336639
Merged-chr16-33898429-2	chr16	33897929	33898929	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	68609.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	2.61610882979868	2.57829163222631	2.88245820693139	2.63624240439697	2.56545376568738	3.11880719950943	0.492406277476061	0.536669433902485	0.854154366032096
Merged-chr17-5210374-2	chr17	5209874	5210874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	208393.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.87692681313144	4.73013571786979	4.78658990385111	4.59438634923679	4.59577381802126	4.7378952216186	-0.378222645217771	0.345121946583319	0.733666487940844
Merged-chr8-119436588-2	chr8	119436088	119437088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-574.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	7.41210830675305	7.4226234262691	7.50360287967857	7.68778626463964	7.84308238131221	7.50990558797591	0.365214513895436	0.113597373935992	0.450207898796814
Merged-chr1-85087578-1	chr1	85087078	85088078	+	967.7999880000001	f1_balb.idr	TTS (NM_213615)	TTS (NM_213615)	22275.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	2.82168990107087	3.27543438799427	2.99201057986846	2.40791824603919	2.31598854309531	2.55695850657233	-5.32790564330115	2.8718614097628e-05	0.000991542921923417
Merged-chr3-145924123-4	chr3	145923634	145924634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-128.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	7.87397550720575	8.02091870894153	7.72866451652114	7.79806260509696	8.02529865700322	7.98822536792369	0.0804454354731723	0.721963954784506	0.928606209603791
Merged-chr7-80454227-1	chr7	80453727	80454727	+	574.666687	f1_balb.idr	TTS (NM_007550)	TTS (NM_007550)	-48791.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	2.29363287061039	2.61952952678348	2.68864880685321	2.6530431770608	2.50870672826497	2.70125478454572	0.439876463569257	0.596321186202183	1
Merged-chr2-22986503-1	chr2	22986003	22987003	+	613.666687	f0_balb.idr	intron (NM_001077190, intron 2 of 10)	intron (NM_001077190, intron 2 of 10)	53738.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.57725103272385	4.88106620493525	4.43059493623724	4.78327061207658	4.75303305948475	4.67457431769469	0.196434375061975	0.644505825231669	0.900242810676749
Merged-chr2-167642443-2	chr2	167641943	167642943	+	736.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145538)	TTS (NM_145538)	-10438.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	2.49001327815436	2.4534196415538	2.64032996423064	2.41821246580281	2.5461156192965	2.59073351853412	-0.0393147137401062	0.96015453130315	1
Merged-chr5-105032526-2	chr5	105032030	105033030	+	881.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 3 of 9)	RLTR13C2|LTR|ERVK	21031.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	2.99102028876721	2.84832304188463	3.18124638841829	3.01891012437815	2.9647157524091	3.19732041644811	0.233735197137287	0.732107224429973	0.931683254777456
Merged-chr4-142054657-2	chr4	142054157	142055157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-29641.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.15213335214272	4.16860494113414	4.13735353916655	4.09136952824879	4.06678846259306	4.01258701786642	-0.271032992916043	0.567082371211069	0.867742628008279
Merged-chr6-83456003-4	chr6	83455488	83456488	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 1 of 11)	CpG	404.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	7.85283105016496	7.85626615878709	8.09102035705329	8.07350024857258	7.78365296481265	8.13381848250478	0.0954403958433805	0.681672510743973	0.914804223569577
Merged-chr4-53412167-4	chr4	53411654	53412654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28259.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.34704186838163	5.40690263897727	5.48449482302247	5.35739392119633	5.55893701766194	5.16675038735765	-0.0481666894967941	0.890301417825343	0.974513293810689
Merged-chr11-106961676-4	chr11	106961231	106962231	+	670.549988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37794.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	5.48120808057902	5.7244716101857	6.05833895011475	5.4848048420891	5.25313478527482	5.93151198450358	-0.355011123142494	0.351852663854753	0.739503512176574
Merged-chr2-72838249-4	chr2	72837735	72838735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24518.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	5.13126751029202	5.00936007850148	4.87526813383592	5.72516321291781	5.82351971776149	5.104079652003	1.1556047217236	0.00332904613636501	0.0454849377528176
Merged-chr1-33878404-4	chr1	33877919	33878919	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177235, exon 3 of 7)	exon (NM_177235, exon 3 of 7)	29202.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	6.39156416961921	6.37143112839277	6.36169431965386	6.02861326385527	6.20564032341586	6.6567643151265	-0.101564793985865	0.739563839206713	0.934245371298156
Merged-chr1-87327392-3	chr1	87326891	87327891	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146112, intron 1 of 28)	CpG	393.0	NM_001110212	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	7.59098842649345	7.88145217381591	7.46855534931586	7.5638262268403	7.32633399852333	7.27975715696314	-0.390526733364293	0.117953192944317	0.458660959485934
Merged-chr8-126550011-1	chr8	126549511	126550511	+	701.0	f1_balb.idr	Intergenic	RLTR31D_MM|LTR|ERVK	43425.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.82816363904015	3.43883728719105	3.64270963001592	3.32106773514368	3.26524083144358	3.44521360882243	-1.14908914081032	0.0575050374280399	0.30952061286709
Merged-chr6-122593084-2	chr6	122592584	122593584	+	778.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	B3A|SINE|B2	9360.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.99661249472562	4.97340204060257	5.26131925664846	5.32617457719938	5.07939392481543	5.1659355721345	0.248028053877596	0.501404558492344	0.835670916435272
Merged-chr7-132685949-2	chr7	132685449	132686449	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75306.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	2.98019787293732	3.21131301432245	2.80258490065052	3.08871721611489	2.95516668951151	3.06749975530575	0.0943409965962633	0.894070354842709	0.975337673545585
Merged-chr6-38549739-2	chr6	38549239	38550239	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	4.84594589089855	4.9293141240057	5.23029171132681	4.52517834551703	4.80083899890983	4.90825327697355	-0.559109626382084	0.174178905178507	0.55334916165878
Merged-chr8-104109072-2	chr8	104108572	104109572	+	592.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	LTR33|LTR|ERVL	-3199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	4.85851230200928	4.89869104701119	5.18648121148626	4.74975256658031	4.73006367947119	4.95899261014927	-0.378703966705657	0.337962426861498	0.727905614741064
Merged-chr18-65430815-4	chr18	65430291	65431291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172833)	promoter-TSS (NM_172833)	-206.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	7.555980776637	7.52694534089852	7.00860633188748	7.4808822916245	7.54171177187202	7.09503055752856	-0.00295269931407927	0.99158701242606	0.998317811051189
Merged-chr7-116335430-1	chr7	116334930	116335930	+	583.0	f1_balb.idr	Intergenic	Intergenic	-1240.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	2.46745655780654	2.84696730386654	2.54410449010857	2.60691429384792	2.52583152742239	2.8062339792216	0.0758632137501548	0.925084990450267	1
Merged-chr3-84945104-1	chr3	84944604	84945604	+	567.0	f0_balb.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-7107.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.28304552356009	3.43865479192431	3.45907352940486	3.41013238736679	3.24475803021418	3.47600445387838	-0.0755656792938075	0.899977337925281	0.976728292075907
Merged-chr1-156426930-2	chr1	156426511	156427511	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6096.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	2.86234660780879	2.81835115171333	3.0629813403913	2.86418532427524	2.82413078908615	3.29492541212882	0.42011200170374	0.560887664470106	0.865331098437164
Merged-chr12-26449656-4	chr12	26449164	26450164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 3 of 5)	intron (NM_021384, intron 3 of 5)	6788.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	4.56174502406934	4.81594058166275	4.58454791644359	4.35305256926046	4.45580113185457	4.34598165048122	-0.677698235329322	0.117447929351419	0.457561911483886
Merged-chr10-22301768-4	chr10	22301262	22302262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	ORR1C1|LTR|ERVL-MaLR	-4958.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	7.46824770160536	7.15784592623491	7.54745883092825	7.13268852512685	6.90946088142215	7.09577285153892	-0.526782082419861	0.0381669325177296	0.241734214073078
Merged-chr5-112251486-4	chr5	112251026	112252026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312884, intron 1 of 4)	intron (NM_001312884, intron 1 of 4)	992.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	6.581653791208	6.87617334161822	7.08620857558827	7.00139344127269	7.27935738465439	7.15616334489444	0.452684003557481	0.0940625515498046	0.408558583773876
Merged-chr11-71005429-2	chr11	71004929	71005929	+	839.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-997.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	4.40640848012683	4.36205566965492	4.55003805056358	4.6429332886269	4.58986432225277	4.61636541014781	0.448475525578902	0.286004665755384	0.68342985932029
Merged-chr7-46830920-4	chr7	46830427	46831427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14877.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	8.09501163459102	8.4394828011338	7.9346589037613	8.11395425358648	8.48477457468442	7.89223282368741	0.0222855775290259	0.933950645381324	0.985669634216397
Merged-chr5-113643677-4	chr5	113643166	113644166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359060)	promoter-TSS (NM_001359060)	-63.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.16929664724601	6.61672267213461	6.66231657847638	7.17838792033269	6.75958304369763	6.77075080258868	0.109949648083006	0.716614748098879	0.926727756485089
Merged-chr9-106891318-3	chr9	106890762	106891762	+	874.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_029103, intron 1 of 3)	intron (NM_029103, intron 1 of 3)	676.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	7.02470186041194	7.09191073317202	6.84950369307171	6.99934529960783	7.17131578854738	6.95154534811221	0.07840643691324	0.752675814758666	0.938355947571674
Merged-chr3-130946154-3	chr3	130945593	130946593	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164204.0	NM_010703	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	3.17603702728635	3.24065268703464	3.27114424050545	3.05513509469633	2.74252738850372	2.99451702492564	-1.38609994253992	0.0484622167053181	0.279274473828943
Merged-chr2-85560413-4	chr2	85559887	85560887	+	911.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_146437	258429.0	Mm.377497	NM_146437	ENSMUSG00000111179	Olfr996	MOR175-4	olfactory receptor 996	protein-coding	3.49273796130945	3.68980179801816	3.42315798917704	3.49625212832577	3.52050291246951	3.70978466195949	0.0981107048290817	0.865096190561317	0.96857203435794
Merged-chr13-119453799-1	chr13	119453299	119454299	+	654.0	f0_balb.idr	intron (NM_145457, intron 9 of 10)	intron (NM_145457, intron 9 of 10)	-8960.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	4.01871216718683	4.27233605614832	4.68353923028532	3.99279972924466	3.56688938376897	4.16998558358184	-1.19102517622898	0.0362393668089925	0.234188042361187
Merged-chr8-70625232-4	chr8	70624715	70625715	+	696.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	6880.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	4.64509322260538	4.46396233265075	4.6353360442711	4.07560806942206	4.54866989928777	4.50152929754655	-0.463324020121104	0.316051061576366	0.71019071166749
Merged-chr7-90135604-3	chr7	90135139	90136139	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	5426.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.57810426876841	7.04942649641699	6.3531043301598	6.20739372352853	6.27343710652656	6.24814977520518	-0.74638682943902	0.0157593921757403	0.137482439102432
Merged-chr11-115655268-2	chr11	115654768	115655768	+	623.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-26973.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.53944347645043	6.68684975312261	6.49646679706037	6.54295734462021	6.70887571580461	6.72304236844767	0.125149324775692	0.632257921490608	0.895455688097062
Merged-chr15-76657004-4	chr15	76656517	76657517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276321)	promoter-TSS (NM_001276321)	-116.0	NM_001276321	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	6.00742170542642	5.76093466568009	5.79144891772823	5.91676301441424	5.63765274861829	5.60860916748174	-0.235208396675415	0.462380295692808	0.81519068658376
Merged-chr2-27290138-2	chr2	27289605	27290605	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-42802.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.03610369744425	2.83350450586804	3.15313567468414	2.84621457820286	2.65860751353995	3.05785206255909	-0.736408302780326	0.317221311140973	0.711181392710422
Merged-chr15-61999787-4	chr15	61999281	62000281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14440.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	6.62579219991895	6.3126144117629	6.31503581884006	6.1496707589342	5.96421344221706	6.25595308336495	-0.519095630629377	0.0764511301641572	0.364192227554771
Merged-chr11-60416039-2	chr11	60415539	60416539	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145427, intron 1 of 7)	intron (NM_145427, intron 1 of 7)	1060.0	NM_145427	246782.0	Mm.41651	NM_145427	ENSMUSG00000042709	Atpaf2	ATP12|ATP12p	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding	3.48987681152259	3.28745771317564	3.50325701356048	3.81014500839436	3.3546268314338	3.62816953858606	0.650882660676167	0.28111277772036	0.679294650884466
Merged-chr17-28512422-2	chr17	28511922	28512922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18439.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	4.41887900113289	4.52541305332674	4.81073874760247	4.51576769161228	4.4141266893589	4.83976347165558	0.0131606310734773	0.97647829440686	0.994723308989508
Merged-chr2-6366822-4	chr2	6366322	6367322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	14086.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.18905253148219	4.76116597993261	4.66110119122895	4.84680654648349	4.79608631340092	4.77006694593204	-0.214760994793592	0.606112531849495	0.883866308274321
Merged-chr11-43715502-4	chr11	43715019	43716019	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164231, intron 2 of 3)	intron (NM_001164231, intron 2 of 3)	32454.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	4.28922620431757	4.16458315304095	4.49892297787134	4.38636750766429	4.36159179905504	4.26583184852132	0.071385603278797	0.875488533903093	0.971052726689041
Merged-chr11-98963402-2	chr11	98962902	98963902	+	751.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1470.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.79269255558086	3.35071280000066	3.96879853492018	4.04353806534225	3.80204633463069	3.84412137182197	0.560026705675816	0.340349252912775	0.730060597467613
Merged-chr16-52060535-4	chr16	52060020	52061020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28971.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	8.49320395325173	8.79879677864319	8.29250986968555	8.56749621598194	9.06462243416126	8.24968942360939	0.184446736839741	0.520624058575167	0.846662720861138
Merged-chr4-133129564-2	chr4	133129071	133130071	+	619.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1062.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.68543797485362	5.85898578828869	5.8144209140072	5.80748051585566	6.03256622932358	6.1252507293288	0.361619007241653	0.238734798966	0.635449458992732
Merged-chr19-15201277-5	chr19	15200734	15201734	+	833.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-603051.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.13641793407989	3.08109192217685	3.06446985104746	3.15759099288554	2.82044267731866	3.36044684664578	0.134261169963145	0.847637989820835	0.964318271116593
Merged-chr15-96475603-4	chr15	96475120	96476120	+	932.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14777.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	4.48065561160676	4.42251299878625	4.37198793117492	4.05560928752943	4.32628322331564	4.26044345785701	-0.543054926225801	0.235173225262262	0.631438971527017
Merged-chr15-86225281-4	chr15	86224795	86225795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	10836.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.97278882892108	6.95648854645121	7.0285727112849	6.69275071134569	6.92868136767387	6.86703461563119	-0.228484843524963	0.356347522091429	0.74323101460165
Merged-chr2-122147593-4	chr2	122147101	122148101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-86.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	8.5890639165537	8.72493550317746	8.17340811580023	8.58979672700915	9.03722781401763	8.31007507280234	0.230615176413263	0.409602686949273	0.782995321992167
Merged-chr9-22122278-3	chr9	22121763	22122763	+	585.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5068.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	4.11136270395011	4.2176656859164	4.69699977463444	4.21388876729381	4.3596505592934	4.50196524516426	0.0131590142756557	0.978455510369954	0.995146803081243
Merged-chr11-54100964-4	chr11	54100476	54101476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	52.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	4.76889098790088	4.63706056208648	4.62612678079184	4.61478167500699	4.04680545458863	4.44146630384358	-0.739985886419351	0.111166675876244	0.445419833321467
Merged-chr11-50228192-2	chr11	50227692	50228692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	2857.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	5.16042853172129	5.22526829865459	5.28533943526354	4.92770583881909	5.0277831754506	5.43446965240912	-0.176838940845171	0.638961616188813	0.897847437626511
Merged-chr11-103142565-3	chr11	103142051	103143051	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9192.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	3.57997058582824	3.68679410778969	4.02371236721583	3.59727502291965	3.46614442594937	3.50233391887105	-0.85158793296905	0.140451190039998	0.500760820920022
Merged-chr3-103745502-4	chr3	103744998	103745998	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010432, intron 14 of 15)	intron (NM_010432, intron 14 of 15)	-7497.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	4.59415325999384	4.4482843670694	4.61712433741766	4.57080279764199	4.38617683485841	4.08890690808019	-0.454683427425248	0.32326736792272	0.716622649530138
Merged-chr1-178336603-4	chr1	178336080	178337080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149827, intron 1 of 16)	CpG	1235.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	8.0484887670498	7.94266968736113	7.75116757414954	7.84647858697635	7.71958181554093	7.89062229599909	-0.154699271106073	0.489390202568393	0.829669202009416
Merged-chr8-123283144-3	chr8	123282641	123283641	+	964.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 28 of 42)	B1F1|SINE|Alu	-28919.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	3.23441784879006	2.93497100001638	3.38642070828503	3.11297005004398	2.91435156519395	3.35240055223603	-0.257841478359419	0.71159236325431	0.924739998464205
Merged-chr11-105460087-4	chr11	105459590	105460590	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3355.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.0636889642977	4.76020748109192	5.20183402513192	4.94527841723349	4.7335402571924	4.86495890619567	-0.367570888698922	0.35818259735426	0.744596677605421
Merged-chr19-46075366-2	chr19	46074866	46075866	+	769.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	-481.0	NM_001039352	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	4.15846297773893	4.38758666361424	4.55477117148937	4.7079786646584	4.44425025742442	4.58101869656609	0.52963489872909	0.237327200878156	0.633725545735683
Merged-chr8-31151309-2	chr8	31150813	31151813	+	746.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199988, exon 1 of 8)	exon (NM_001199988, exon 1 of 8)	997.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	3.84533577757208	3.65192704979621	3.75132446753654	3.84725707148085	3.98460496403942	3.97190133527044	0.585578983522428	0.259487350573978	0.657113137335187
Merged-chr8-4166320-4	chr8	4165772	4166772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039578)	promoter-TSS (NM_001039578)	-295.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	3.99155232927226	3.7998241987204	4.01203271858652	4.14061448432367	4.08076488977142	3.93217093000327	0.371853501002697	0.456457477305229	0.811662045809579
Merged-chr1-36272314-3	chr1	36271831	36272831	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1094.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	7.39442996792024	7.43775032656137	7.57500968081486	7.78139459633176	7.70598213541985	7.55447271923401	0.322532624038463	0.154269271756228	0.52356607428423
Merged-chr1-149947833-4	chr1	149947339	149948339	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	13451.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.64122177039066	6.35879157845394	5.93094037392293	5.76687195926649	6.27794197673711	6.21172799119182	0.150818992914768	0.675564524526376	0.912197928643375
Merged-chr3-41743714-4	chr3	41743208	41744208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1090.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	6.75983281590468	6.97337773711799	6.70013837108861	7.35512722281167	7.68725127015306	7.07659843191276	0.882501010894691	0.0015073410399726	0.0248283730498156
Merged-chr17-4996515-4	chr17	4996062	4997062	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	CpG-5917	1488.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	6.50466954015631	6.36932946819919	6.54518005350913	6.73887114698308	6.22528448519319	6.50013324095947	0.0468110405788069	0.872238161351541	0.970261003150518
Merged-chr3-51360356-3	chr3	51359841	51360841	+	882.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-19697.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	2.56768042626419	2.25704166511694	2.39045042844701	2.50618081615985	2.35430480727596	2.65590870325848	0.572153802280079	0.498194119211633	1
Merged-chr1-16060303-1	chr1	16059803	16060803	+	861.0	f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	33022.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	4.75835842388441	4.75354620940798	4.68610311335538	4.70680942720932	4.63190147928125	4.54423760532321	-0.242832047701327	0.547253545946238	0.859256588783723
Merged-chr9-90253732-4	chr9	90253233	90254233	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	17036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.73197169403424	5.86217910585356	6.08953435457807	6.02604879871126	5.95760340041803	5.97412019407777	0.163719588344262	0.589123863277698	0.876753289776615
Merged-chr15-100637133-8	chr15	100636582	100637582	+	830.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174992)	promoter-TSS (NM_174992)	-142.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	6.49418462269585	6.3964589126935	6.81211277890638	6.54241506295757	6.64776411882256	6.7988450702487	0.149744439939761	0.589982142954556	0.877060163469295
Merged-chr6-37441151-4	chr6	37440646	37441646	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1002.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	5.00468260970822	5.27597788851061	5.05974952946013	5.17132784085346	5.46361433069557	5.12506822888222	0.305941547780666	0.411345001400614	0.783877099438722
Merged-chr17-71196274-2	chr17	71195774	71196774	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	MER20|DNA|hAT-Charlie	-8380.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.6701925459615	5.39084429538555	5.28561738490973	5.57780972196077	5.85594634443344	5.41639819377203	0.32883729020452	0.35395108966924	0.741050304939187
Merged-chr3-108151882-4	chr3	108151412	108152412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3020.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	5.1834221692173	5.51972607036766	5.39224826329118	5.46574112134884	5.83043746406887	5.54462064611853	0.492763111663086	0.159313226919626	0.531411723644967
Merged-chr17-35052557-2	chr17	35052090	35053090	+	656.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 2 of 5)	intron (NM_033444, intron 2 of 5)	2347.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	6.54904074175482	6.35610500965778	6.10248981890276	6.62331801085717	6.99422179735773	6.51795300579164	0.607897753930303	0.0438742187845201	0.263439598513268
Merged-chr9-96478678-4	chr9	96478172	96479172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011279)	promoter-TSS (NM_011279)	3.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	7.38261287219021	7.2751895246344	7.26129142064934	7.22452956172292	7.1903570356385	7.01481751605083	-0.235144331994581	0.318282857825582	0.712060872582233
Merged-chr7-122137918-2	chr7	122137418	122138418	+	613.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	ID_B1|SINE|B4	4877.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	6.34101670144136	5.66747809154412	6.4212792082491	6.57303035154233	6.30310195265303	6.27341593062522	0.349755555858104	0.305362555992112	0.70154336825049
Merged-chr12-111540091-2	chr12	111539591	111540591	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033168)	promoter-TSS (NR_033168)	-855.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	3.66462733304531	3.75788403149461	3.68846031437807	3.70271422468641	3.64967230255947	3.65240669826782	-0.126240937583354	0.814240428886752	0.956174647698565
Merged-chr18-35662238-4	chr18	35661724	35662724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027733)	promoter-TSS (NM_027733)	-38.0	NM_029485	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	4.81417283463884	4.37490840668817	4.17721345078512	4.73880533969531	4.50439987073422	4.0871227880714	-0.0368597023685412	0.94363330648325	0.987453245208137
Merged-chr13-60892466-4	chr13	60891981	60892981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	4966.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	7.05753740118659	7.20293812977097	7.19977556385135	7.21349385708768	7.56715139778428	7.03892833278255	0.225062855997355	0.392148295612561	0.770936216924513
Merged-chr2-90518186-2	chr2	90517675	90518675	+	873.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-39001.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.40809740420478	5.56186749160808	5.66897406417778	5.64221387360256	5.2320868800855	5.42527558484444	-0.20212683890478	0.560599813438461	0.865261302076164
Merged-chr11-120916669-4	chr11	120916157	120917157	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	16215.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	6.41164861214626	6.70355057991097	6.60001660196059	6.42872243796615	6.74592188034119	6.07796382780462	-0.183450389714845	0.554934592754143	0.862989905297353
Merged-chr10-8466118-4	chr10	8465630	8466630	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	52695.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.1377192064493	3.02534808472424	3.40922121953514	3.18068798332722	3.05099940694012	3.32158139472751	-0.0415172332186443	0.949731752158509	0.988262491699525
Merged-chr4-130900012-3	chr4	130899493	130900493	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13341.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	4.99034233654439	5.1386280085139	4.85043054311884	5.39139752511603	5.38211292114168	5.17796953709269	0.65398884841298	0.0743343158271451	0.358646048437034
Merged-chr15-25623143-4	chr15	25622630	25623630	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	CpG	580.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.85603699205108	6.9349156940159	6.77876234073996	6.72598674292488	6.83103225607782	6.85225478349942	-0.0915035919896124	0.711891273484909	0.924889808252387
Merged-chr10-119050155-4	chr10	119049650	119050650	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152787, exon 2 of 4)	non-coding (NR_152787, exon 2 of 4)	349.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	4.95596006583396	4.89168409657109	4.63326465224118	4.596046974398	4.41819676040051	4.85499853225704	-0.512244716193611	0.228718164668014	0.62399360784603
Merged-chr10-60290588-3	chr10	60290098	60291098	+	961.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	6137.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.05988574709207	4.98906660970718	5.5527091385396	5.29640552345928	5.29279318221937	5.39653630333586	0.235390820755602	0.533609356691497	0.852512717476021
Merged-chr4-135986221-2	chr4	135985721	135986721	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	1023.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	3.79096599703716	3.52574342163222	3.66492396060067	3.39553698669684	3.66775918307088	3.88178001738027	-0.0215557086703665	0.970460008013407	0.993467555108569
Merged-chr10-12968382-3	chr10	12967841	12968841	+	836.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-4082.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	2.62285813491629	2.66973596940111	3.14080316670906	2.96466490421493	2.72302470860082	3.31611528611332	0.886393121416912	0.265910409170748	0.663723101940232
Merged-chr2-11439489-4	chr2	11438980	11439980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.8120315699525	5.56359688510922	5.38965680507188	5.41602078809358	5.38681143694613	4.98959344103515	-0.610093942067367	0.0974146355278579	0.416145240425197
Merged-chr11-51262475-1	chr11	51261975	51262975	+	767.5	f0_balb.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	582.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	7.0929672858232	7.69884022999679	7.14872994528397	7.16286335323734	7.37426129846081	6.96094910490911	-0.248465739935882	0.39362725587302	0.771819603795887
Merged-chr9-79760319-2	chr9	79759819	79760819	+	754.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	-466.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	5.4751281054676	5.82393314210096	5.61068774146509	5.42984005864373	5.5120098603431	5.6184907700404	-0.243845862905487	0.463638655533577	0.816038286358001
Merged-chr7-28809140-4	chr7	28808662	28809662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1728.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	9.1480065044113	9.29544129713548	8.98417497129892	9.09195503140416	9.30856612675492	9.21175313449304	0.0763296153470007	0.712027949453611	0.924891945289204
Merged-chr19-47089838-3	chr19	47089340	47090340	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	785.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	6.68011741187667	7.06321715214578	6.44003288482381	6.55978259202563	7.05604398615646	6.17529011681975	-0.153555981632613	0.661458656102058	0.90639160796631
Merged-chr5-105875042-1	chr5	105874542	105875542	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.18005839929044	3.01156284134707	3.37520382580726	2.96927676773161	2.97815777402531	2.9991906976724	-0.940047891103004	0.165121955455033	0.539852192526402
Merged-chr12-84011663-3	chr12	84011163	84012163	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012006, intron 1 of 2)	intron (NM_012006, intron 1 of 2)	2161.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	3.17704342434782	3.27530230326957	3.1616354438296	2.86497141392041	2.78825358918682	2.80319694008497	-1.93051795975186	0.00723219813546627	0.0800399784242729
Merged-chr2-102672137-3	chr2	102671630	102672630	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	MTC|LTR|ERVL-MaLR	13441.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	4.05950938813862	4.07056140186824	3.98792682782415	3.16240305935931	3.10409012971027	3.42871366560172	-3.37939316084474	1.00495973537925e-06	5.44760193234117e-05
Merged-chr18-69400155-4	chr18	69399681	69400681	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54021.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.72232414487696	7.2786567720944	6.47371658391485	6.52288587363085	7.06367676289969	6.41443419844961	-0.261940630160358	0.451440317479066	0.80905909605502
Merged-chr8-25098256-2	chr8	25097756	25098756	+	608.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	3555.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	4.70269663552892	5.06041978484653	5.39424963725405	5.54668281361181	5.65879977584456	5.56877632355641	1.04062047192903	0.00656541897172624	0.0746015963339291
Merged-chr16-24935487-3	chr16	24934975	24935975	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	B3A|SINE|B2	-124164.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.05214180240523	6.13287867248486	6.13944773281582	5.86181721952333	5.95731146562695	6.15817765533524	-0.200875936706006	0.492416353986348	0.83104217378051
Merged-chr16-32001366-2	chr16	32000866	32001866	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357087, intron 1 of 9)	intron (NM_001357087, intron 1 of 9)	1921.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	2.69716266248145	2.98745697617763	2.53026194111389	2.8188346008349	2.67057954514555	2.98776651387452	0.369436050467758	0.64686883229555	0.90114476203283
Merged-chr15-81848501-4	chr15	81848007	81849007	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020507, exon 2 of 2)	3' UTR (NM_020507, exon 2 of 2)	9819.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.18484385540205	4.34449502991813	4.36137728545745	4.34230880210808	4.20258093548664	4.38556756573562	0.0256074221593601	0.954925680411612	0.989683851514547
Merged-chr19-56773701-3	chr19	56773237	56774237	+	962.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	39946.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	7.4215441429182	7.1847961488668	7.3182339146259	6.86533938073147	7.1903872169401	7.03694105713537	-0.403095004697078	0.107142090605169	0.436842369417627
Merged-chr7-51861797-4	chr7	51861301	51862301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-214.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	6.5981164511903	6.52718535524222	6.77876379915858	6.80164859519408	6.32139481620591	6.58535218508998	-0.0844702909833848	0.767051543585814	0.942573703853445
Merged-chr9-106212117-4	chr9	106211613	106212613	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011876, intron 3 of 8)	intron (NM_011876, intron 3 of 8)	9005.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	3.1426020836268	2.89233547830761	3.17753456706703	2.9655487528168	2.78132581750918	2.83376677878021	-1.01914401600037	0.151206194650304	0.518506648409409
Merged-chr3-127762647-4	chr3	127762139	127763139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17888.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	6.32272788173472	5.85604483672426	5.68538632623232	5.8920019354273	5.23326140075374	5.38201295840873	-0.819834570745557	0.0340221019778111	0.225642520434378
Merged-chr4-133929462-2	chr4	133928958	133929958	+	819.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	38533.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	5.4953181428564	5.46933413580458	5.52325374780522	5.76580213196458	5.80918364156503	6.05138682390083	0.696489881743821	0.0281241624142108	0.200544631601821
Merged-chr4-133614595-4	chr4	133614069	133615069	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 3 of 7)	intron (NM_001017968, intron 3 of 7)	-12401.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	7.5309920084135	7.46985389112706	6.98726706978715	5.36415579246916	5.09105705808309	5.32619626998649	-3.62070972618407	9.52957122875162e-29	4.40520312667758e-25
Merged-chr15-59049024-4	chr15	59048524	59049524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33002.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.40745360757385	5.2194649743582	5.33526186515725	5.14903687059192	5.29461964758264	5.20791085131821	-0.200285202619531	0.565293840081166	0.866599059240356
Merged-chr3-87332200-4	chr3	87331662	87332662	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-25719.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.8950189800509	6.66873681079296	7.14352280065375	6.59938400846533	6.73713157572964	6.22052163451929	-0.564597003700689	0.0593499657537755	0.315491723659372
Merged-chr14-69029297-3	chr14	69028795	69029795	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009285)	promoter-TSS (NM_009285)	6.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	2.41850517304929	2.27319920166015	2.81331305671073	2.30356090201823	2.20193584938281	2.34214019966527	-1.50932209453433	0.0922161451995443	1
Merged-chr5-136199094-4	chr5	136198607	136199607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-153.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	6.54857573851421	6.79684093288457	6.71555317441262	6.78194123901978	6.90680562569251	6.72670117269197	0.190790887678329	0.459876365332037	0.814018733120918
Merged-chr3-15426401-3	chr3	15425841	15426841	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002898)	promoter-TSS (NM_001002898)	86.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	4.57105997136977	5.05021927029978	4.49448466453672	4.99979102374057	4.82024517575364	4.77835145675228	0.288037002905025	0.509166590152038	0.840259686110366
Merged-chr12-110686995-4	chr12	110686492	110687492	+	875.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-4373.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	3.39583167448638	3.50803694166583	3.31428596425023	2.9658865538628	3.16337012384132	3.27222196932795	-1.13840450339516	0.0802808463747886	0.374923312855891
Merged-chr5-140828785-3	chr5	140828274	140829274	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	1657.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.55805180342939	6.0006433125325	5.69389411638367	5.25791121175575	5.33179028490184	5.38615268734728	-0.843010336493443	0.014058907764713	0.127181299987632
Merged-chr11-116865661-3	chr11	116865019	116866019	+	589.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 8 of 12)	intron (NM_178620, intron 8 of 12)	11519.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	3.33165321784832	3.52642331432859	3.67712602950251	3.26318921109168	3.28616318438729	3.38391665618815	-0.78690719050571	0.194964497771958	0.582687616486803
Merged-chr13-52929642-4	chr13	52929133	52930133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016709)	promoter-TSS (NM_016709)	44.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	5.70855131300478	5.44863808285957	5.61404459423236	6.07449904789073	5.56124515134472	5.75705742565625	0.400114031883676	0.241376788691788	0.638385260200477
Merged-chr19-56746593-2	chr19	56746093	56747093	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24221.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.1542199678556	4.98439688713145	5.39062015541994	4.99448023218035	5.19501695219906	5.84301501965656	0.410762158616088	0.330008812026279	0.72162759463583
Merged-chr6-97423978-2	chr6	97423478	97424478	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	35308.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.31882409694361	4.57233118843422	4.99944015041615	4.48056738709214	4.45608329863576	4.65011859065235	-0.295744010212534	0.522164570375138	0.847473464378842
Merged-chr4-120825277-4	chr4	120824782	120825782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357194)	promoter-TSS (NM_001357194)	-73.0	NM_001357194	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	8.75475826777738	8.92281296869186	8.50860885507229	8.6657521181043	8.70369168511635	8.55841655526169	-0.136564728356348	0.531234261104818	0.851497541955804
Merged-chr3-65319477-1	chr3	65318977	65319977	+	910.0	f0_c57.idr	exon (NM_001289450, exon 9 of 15)	exon (NM_001289450, exon 9 of 15)	-16792.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	5.05395305565015	5.4530185535449	5.30129091547641	5.36194700643684	5.91271000654547	5.54657212594488	0.683429096572646	0.067270262130791	0.339137666469697
Merged-chr7-28807867-3	chr7	28807342	28808342	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3048.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	5.67703385055648	5.64199046160839	5.6720876460647	5.7480521110706	5.64070926222294	5.5079037269497	-0.0408451363468555	0.897143867935426	0.975955240159241
Merged-chr19-6943043-2	chr19	6942543	6943543	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177361)	promoter-TSS (NM_001177361)	481.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	4.43705380916925	4.58419545022315	4.36401148468955	4.18905015949109	4.17009260385486	4.10114425804279	-0.83868347351957	0.0659636211369182	0.335221959181517
Merged-chr2-72786031-3	chr2	72785527	72786527	+	995.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27690.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	4.39698295916635	4.04226422753973	4.43306345505683	5.607537094579	5.91194614194292	5.41986400436667	3.1047131686135	8.80237382725588e-13	1.69151944900302e-10
Merged-chr5-125403262-1	chr5	125402762	125403762	+	540.0	f1_balb.idr	Intergenic	B3|SINE|B2	-13245.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.23644237670958	2.98425147013689	3.33520756009543	3.47496038732728	3.51250668857703	3.66914980414641	1.44698751905526	0.0228879968798542	0.17665007368323
Merged-chr1-43804344-4	chr1	43803848	43804848	+	787.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 4 of 14)	Lx8|LINE|L1	23360.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	4.05290933775244	4.11225863280781	3.73462818624405	3.86650781617897	3.62783668012135	4.48207186446593	0.177653663444172	0.766312507119887	0.942449873515402
Merged-chr11-118240645-2	chr11	118240145	118241145	+	939.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	7947.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.65623849819923	5.30492268128751	5.56725768955258	5.62719812492464	5.66248515764806	5.78606050202306	0.325634945077089	0.325286861657037	0.718077478450679
Merged-chr16-95612197-4	chr16	95611688	95612688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25595.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	4.24801348593079	3.60810368372783	3.92952558091974	4.07982387211123	4.01864941227788	3.78834785019675	0.0360069727589764	0.94907905305693	0.988169196639905
Merged-chr2-157081987-6	chr2	157081448	157082448	+	954.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2683.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	5.78741506167225	5.68691366891873	5.83487276480543	6.12002076660154	5.73244339352466	5.79566747883974	0.225652357676304	0.477382589237723	0.823237639056184
Merged-chr11-60811211-4	chr11	60810687	60811687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009171)	promoter-TSS (NM_009171)	78.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	5.28272324988753	5.18506322468607	5.18548778905961	5.39018418543784	5.3415496988561	4.95899165216089	0.0730949961765556	0.841687130341405	0.962988975342446
Merged-chr11-79291386-4	chr11	79290899	79291899	+	906.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-36704.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.37737174913315	5.43190446852519	5.51023209966081	5.63498988799287	5.50651185462454	5.80611482922131	0.393936436132531	0.231307894096612	0.62715198448926
Merged-chr6-87485201-2	chr6	87484704	87485704	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	11123.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.71478112313489	2.48728650593401	2.64418153616509	2.36704571872717	2.35102195461587	2.59415053798824	-1.11230285832109	0.176498973540885	1
Merged-chr8-91411858-3	chr8	91411356	91412356	+	994.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 3 of 8)	intron (NM_011936, intron 3 of 8)	98331.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.04048620180167	2.82314624413854	2.84559824814835	2.44905753287925	2.56657829593488	2.85864554283744	-1.51336146129079	0.0645028328076162	0.331036297278656
Merged-chr10-122562171-4	chr10	122561689	122562689	+	775.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7702.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.46050013472203	6.59038255355522	6.69106960395248	6.91187549284739	7.20049081077975	6.7339447671035	0.616768943452334	0.0239158799343831	0.181773430932907
Merged-chr10-24148562-2	chr10	24148062	24149062	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-727.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.1752355889473	5.16844393546998	5.41108722385876	5.20950439074509	5.36853843646936	5.47348333596745	0.208661787204315	0.552352413068177	0.86166106576008
Merged-chr11-59559807-4	chr11	59559291	59560291	+	857.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	11947.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	5.09873075913677	5.16146955543055	5.22278539856136	5.07715604014005	5.14473955514912	5.34694140265151	0.0588099709637044	0.869394767876292	0.969788171765313
Merged-chr1-135523267-4	chr1	135522752	135523752	+	902.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 3 of 28)	ORR1E|LTR|ERVL-MaLR	62103.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	3.35776999504837	3.13894488887706	3.40961675568889	3.89512212500476	3.65147908907188	3.80225484757531	1.78983488766535	0.00301059988028903	0.0422338491228601
Merged-chr7-5059657-4	chr7	5059140	5060140	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290432, exon 5 of 6)	exon (NM_001290432, exon 5 of 6)	-2503.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	4.96183196505204	4.67589352297707	5.63121559067413	5.19091063971005	5.06868639962663	5.29802345051153	0.0856173404650897	0.84695844011599	0.964139319360833
Merged-chr3-59208190-4	chr3	59207701	59208701	+	905.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	2681.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.90061616095187	6.9431087286872	6.8782220101439	7.03960451959112	7.25961954100602	7.06117770439812	0.335915943410394	0.167356569435094	0.543112536254107
Merged-chr19-3855165-2	chr19	3854665	3855665	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	3392.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	3.10117645221211	2.99205225338068	3.16758321670842	2.92026127864877	2.93199868413932	3.0098377369128	-0.623245161165608	0.352609257443591	0.740194084833795
Merged-chr15-102405980-7	chr15	102405469	102406469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013672)	promoter-TSS (NM_013672)	-347.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	7.47075142373814	6.81854523737655	6.75711480029223	7.14924352599148	6.81277991937975	6.60979100936984	-0.282733429836629	0.381255258522807	0.763080052613635
Merged-chr2-153345674-4	chr2	153345189	153346189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039939)	promoter-TSS (NM_001039939)	121.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	6.79701100666914	6.7429082480696	6.84800565734117	6.6546137381373	6.70217115978494	6.7263596916861	-0.156744253915736	0.528395957447352	0.85053360857083
Merged-chr12-35048602-2	chr12	35048102	35049102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	1413.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	7.39356295430148	7.43195749183693	6.95321756981035	7.50480216025362	8.03272268245113	7.45474390743797	0.606178185862814	0.0354236328269303	0.231033832909799
Merged-chr17-71669698-4	chr17	71669203	71670203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3558.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	3.4902709925351	3.56057370720638	3.51009780344553	3.60082885731871	3.567251814935	3.83596371089897	0.50769194792122	0.366806783142248	0.751897609642077
Merged-chr18-23809020-4	chr18	23808500	23809500	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	5030.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.56955472901862	7.57948049323548	7.30540473993679	7.70471206876044	7.95866921362215	7.38601239098145	0.316353060322448	0.224837460692366	0.619740315016701
Merged-chr11-103967877-2	chr11	103967377	103968377	+	796.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 1 of 4)	intron (NM_007477, intron 1 of 4)	1006.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	5.36732985943157	5.24205895811506	5.31434811911956	5.34420456610662	5.50605167873137	5.63406154655681	0.365069058167419	0.281492591564756	0.67967073158435
Merged-chr11-75531046-2	chr11	75530546	75531546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-648.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	6.60685006387832	6.39284624864163	6.83793671952166	6.65870810387289	6.96482077759434	6.41508720676211	0.149076010894901	0.618673528149773	0.889497316944952
Merged-chr7-67307306-4	chr7	67306820	67307820	+	709.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	65538.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.07385349104325	4.28132248272163	4.24732330888278	4.05118284349266	4.41150737283397	4.12905697301397	0.0393514581807754	0.935271174622606	0.985837609291391
Merged-chr4-148818658-2	chr4	148818158	148819158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027195, intron 1 of 15)	intron (NM_027195, intron 1 of 15)	14266.0	NM_027195	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	3.0921117684594	2.92694755762725	2.92670098043799	3.04190784857724	2.94852566082628	3.11832973261002	0.218196869302635	0.746324374386149	0.936300236930265
Merged-chr13-97584355-4	chr13	97583859	97584859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_046157)	TTS (NR_046157)	24359.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.59743790675618	4.38047311844774	4.71950946066527	4.96605234991838	5.2322449157363	4.90092732545058	1.10775394362644	0.00685786590629298	0.0769560763763758
Merged-chr3-81058710-4	chr3	81058216	81059216	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	22300.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.875655673487	5.60635897082586	5.83725717633833	5.34940489258419	5.16850207788473	5.42115363797594	-0.89018386173348	0.00801372607614104	0.0861893753319264
Merged-chr2-117114111-3	chr2	117113632	117114632	+	728.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6939.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.30067745227375	4.36703214247787	4.40874308280417	4.40466200421684	3.99559962956277	4.39114500825569	-0.238907627524045	0.612941317383545	0.886969289870611
Merged-chr19-46488338-2	chr19	46487838	46488838	+	694.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13310.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.32412767548734	5.04314184306991	5.63474263748057	5.10699771922024	5.17147322813782	5.40549577399319	-0.234162659141261	0.539853346721563	0.856175757138105
Merged-chr2-155051778-1	chr2	155051278	155052278	+	849.0	f1_c57bl6.idr	TTS (NM_015770)	TTS (NM_015770)	22719.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	4.38451138925981	4.32284296391598	4.00395295449317	4.0219227627123	3.81951041957711	3.74671633688774	-1.13035456071457	0.0289477037790073	0.204160072558369
Merged-chr9-114785551-4	chr9	114785060	114786060	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-3567.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.39560702175557	5.94908972580039	6.12735425019223	6.09636903135593	6.25695362852168	6.03774172937451	0.4941213650933	0.152111674742385	0.520013451274295
Merged-chr1-134458331-4	chr1	134457832	134458832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311136, intron 1 of 11)	intron (NM_001311136, intron 1 of 11)	2801.0	NM_001311136	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	3.08011159315561	3.11308325195769	3.24225295386206	3.07806078325203	2.88597223887832	3.2585115716288	-0.302581293797528	0.651842654181975	0.902896807825606
Merged-chr10-96274188-4	chr10	96273704	96274704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47997.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.72762902870843	4.77819502842662	4.59312950588126	4.5494997590897	4.52812099432267	4.39628548630584	-0.506417840453194	0.225694711682734	0.620677573839554
Merged-chr1-192752860-3	chr1	192752350	192753350	+	596.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	18369.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	4.72636032546903	4.80795447206796	4.74970411600831	5.58530891200239	5.49762531689762	5.47246326691274	1.57156911049979	1.33106202678149e-05	0.000512754671872381
Merged-chr2-91085949-2	chr2	91085383	91086383	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10795.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.72029020937044	7.5145152387214	7.84294175836342	7.66451904019935	7.82257896336963	8.04625913886935	0.223214345861525	0.353560253061605	0.740752980785305
Merged-chr2-159843478-4	chr2	159842967	159843967	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103874.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	2.50447270745312	2.30219558755329	2.35953292498266	2.42859949168155	2.35531517858374	2.56237364885413	0.341099159782555	0.678469288198968	1
Merged-chr4-53086395-2	chr4	53085895	53086895	+	648.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	73500.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.86451636082546	2.78843943136782	3.11907145183621	3.00131274959372	2.82686631138284	3.13501077892291	0.296993797870769	0.67468114249651	0.911852710156386
Merged-chr3-51270615-4	chr3	51270118	51271118	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6143.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	6.26194972401244	6.06367465933674	6.09841685273288	6.38919462195683	6.62567810603779	6.04266286086117	0.403862030017927	0.188808103821703	0.574313460164366
Merged-chr8-46617965-4	chr8	46617463	46618463	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151680)	promoter-TSS (NR_151680)	672.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	6.10189495078418	6.27323999398007	6.3641709317161	6.40945455607037	6.45910643267957	6.18229294581827	0.197407653580757	0.48664931501977	0.827985697457807
Merged-chr9-21165219-4	chr9	21164723	21165723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	-491.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	5.35580036795594	4.96706969786897	4.90261792549203	4.89776181181519	4.95389506888624	4.76999583958101	-0.466871047864931	0.241506790475421	0.638545539550255
Merged-chr8-40994080-4	chr8	40993527	40994527	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 13 of 13)	B1_Mus1|SINE|Alu	-23441.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.63448420778885	4.40099148717432	4.71252346390355	4.36124444037536	4.23959726803401	4.23601291410318	-0.777198867133459	0.0821834975040363	0.379123019025808
Merged-chr19-40587207-4	chr19	40586697	40587697	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153554, intron 1 of 18)	intron (NM_153554, intron 1 of 18)	1266.0	NM_019698	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	4.8753245675534	4.71634242616904	4.84835264840415	5.96064480536017	5.97181454803239	5.08149947560449	1.85338493152291	7.55524784795144e-06	0.000314485774353349
Merged-chr18-60375868-2	chr18	60375368	60376368	+	952.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146275)	promoter-TSS (NM_001146275)	-161.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	4.93298367485123	5.3326316173266	5.08416362185528	5.81438725496045	5.63947334712671	5.79956318023251	1.18690783608427	0.000812731825947964	0.0153456515985155
Merged-chr4-133056717-4	chr4	133056176	133057176	+	786.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	45170.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	3.67815662345289	3.27665623016736	3.67090649202196	3.52103382668601	3.47754689149187	3.92932529618341	0.341834712508782	0.576954000136892	0.87187513064165
Merged-chr18-23902011-2	chr18	23901511	23902511	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52677.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	3.56575146191378	3.63833247641706	3.47256573981393	3.48825498484833	3.55308172008136	3.54376311212986	-0.129538817180948	0.818739813610713	0.95706361736001
Merged-chr13-110568194-2	chr13	110567694	110568694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173150.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.73537639399024	6.57784525774728	6.51578207430363	6.94119449560699	7.00830686786695	6.48128521043745	0.353915952509543	0.210788421782225	0.603098348627511
Merged-chr1-78488785-4	chr1	78488294	78489294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102757, exon 1 of 17)	non-coding (NR_102757, exon 1 of 17)	103.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	7.03106770394823	7.29739397906291	7.16516507668324	7.29622224978462	7.39320837338288	6.71197738592629	0.0150741050829193	0.958046301972624	0.990000537228272
Merged-chr19-40684743-2	chr19	40684243	40685243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24973.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.00082004948886	5.65941286978917	5.87854434236699	6.05270722006122	6.19611288634182	6.03435349563468	0.433520625615408	0.154758075408995	0.523993298349518
Merged-chr13-102899452-4	chr13	102898962	102899962	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	139207.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	4.03403959005162	3.89302734965529	3.78143600573143	4.11304568613382	4.05554898555851	3.85254080533704	0.316195151094794	0.537272751588073	0.85436286194512
Merged-chr11-106790548-2	chr11	106790048	106791048	+	915.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 1 of 18)	intron (NM_001166685, intron 1 of 18)	1296.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	3.85430075784024	3.83423628753623	3.53375812584062	3.42232663877713	3.60788424915464	3.49068029311882	-0.839503493007462	0.147258979682899	0.51213793055522
Merged-chr9-108290370-4	chr9	108289861	108290861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025449)	promoter-TSS (NM_025449)	-96.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	4.54620138625991	4.73570381298788	4.73821564965075	4.74509903638996	4.570054675888	4.87656758551789	0.123541581542422	0.764404015070771	0.941979298344481
Merged-chr17-78416904-2	chr17	78416404	78417404	+	603.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	intron (NM_001360407, intron 1 of 9)	1248.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.57504521543195	4.52874630012199	5.02227040865633	5.07415831721485	5.0211342279004	5.05314537787864	0.75183884549049	0.0647607943866921	0.331709213870599
Merged-chr16-25011146-4	chr16	25010647	25011647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48492.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.38885464107645	6.4467797319434	6.47413418289551	6.30758580201016	6.5533651221079	6.4245210961346	0.0039113249202306	0.988427076202502	0.997390908272651
Merged-chr16-17646446-4	chr16	17645938	17646938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166164)	promoter-TSS (NM_001166164)	-32.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	3.27155323775963	3.07999263685353	3.36445829610476	3.10058241890354	2.96765357179719	3.04318446601901	-0.908871379032367	0.16988858555671	0.547041114004981
Merged-chr7-129307176-4	chr7	129306706	129307706	+	770.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	50112.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	2.97175492571873	3.08744372168715	3.00640800713574	3.26035066014169	3.53196064612617	3.26349659243386	1.45658625214542	0.0274463798576358	0.19745446785355
Merged-chr8-36994373-4	chr8	36993886	36994886	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039220, exon 1 of 1)	exon (NM_001039220, exon 1 of 1)	811.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	6.62113705912118	6.66594445259191	6.45838667674645	6.17695029138266	6.43943830554019	6.51782613730203	-0.333972685361419	0.226583988778104	0.621533610412359
Merged-chr16-93815652-1	chr16	93815152	93816152	+	828.0	f1_balb.idr	Intergenic	Intergenic	-16469.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	6.82834696544278	6.92698234091356	6.7547821273728	7.25901639074889	7.50872415462357	7.0638306715507	0.691965792464186	0.00740228055535765	0.0814505369545358
Merged-chr1-134079190-4	chr1	134078707	134079707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007570)	promoter-TSS (NM_007570)	-52.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.2268995277023	8.05816714511779	7.94483032568894	8.13774300547298	7.98982722855425	7.75820673671064	-0.154969892227259	0.504191392168754	0.83751412120853
Merged-chr14-79546483-1	chr14	79545983	79546983	+	548.0	f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	30809.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.60217814867803	3.23241970463752	3.82466492162108	3.59450803253048	3.20090900913522	3.43840805803851	-0.548324961170208	0.395784111054724	0.773144649859171
Merged-chr15-63545854-4	chr15	63545316	63546316	+	961.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-66208.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.22234085920714	3.97777086048686	4.00772487422009	3.95673574470185	4.2396946143837	3.92406239199111	-0.0519476712784676	0.918403165971069	0.981763285723178
Merged-chr10-117843121-2	chr10	117842641	117843641	+	996.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B1_Mus1|SINE|Alu	2833.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.72970918845288	7.57965796574699	7.4687598366551	7.8073620295655	8.11805575403845	7.33320472045096	0.294078481425881	0.29321716416408	0.690196017357506
Merged-chr11-68654088-3	chr11	68653599	68654599	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-37816.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	4.34807489063428	4.0153927044024	4.24188397177331	4.17904835409263	4.00623702397802	4.3522776359271	-0.0849439182362074	0.86174820785023	0.967996224966109
Merged-chr7-71875460-3	chr7	71874965	71875965	+	868.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-34230.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.71434542201735	4.56665081359184	4.81123376511279	4.18925130597608	4.0329327456735	4.22945834530184	-1.44304744643422	0.00140933963916959	0.0236085219193259
Merged-chr13-38635110-4	chr13	38634617	38635617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139063)	promoter-TSS (NM_139063)	-8.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	5.61800273181637	5.76209382259201	5.8684257534089	5.80349812848264	5.71340825572653	5.43862558484812	-0.141728630886903	0.663697977384071	0.907297356021587
Merged-chr8-111029728-2	chr8	111029235	111030235	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190786, intron 1 of 11)	RLTR31_Mm|LTR|ERVK	-1965.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	4.1433178513456	4.18844069438099	4.1753531420299	4.62447262882775	5.00954191841743	4.5684448262681	1.49859580474464	0.000938611257139956	0.0171370560174869
Merged-chr6-38950520-4	chr6	38950008	38951008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31522.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.82273073300175	7.69164632694643	7.8341378248206	7.84355813743946	8.14250745475133	7.70946838683707	0.196654148209265	0.406017453680992	0.78051705678514
Merged-chr2-129301512-3	chr2	129301133	129302133	+	960.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	4263.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	4.81959962040639	4.57788833423091	5.55027829264117	5.24396776155382	5.25459961713628	5.51017446367557	0.602305322247772	0.182459158892812	0.5653332996564
Merged-chr9-107713613-4	chr9	107713117	107714117	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	4.00774293752558	3.82744315538062	3.68962413440117	3.8558444520022	3.63578718817381	3.53202206960562	-0.551743669436117	0.322500176010339	0.71597252417707
Merged-chr5-134676945-2	chr5	134676445	134677445	+	605.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1303.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	4.27698434252918	4.23081857833656	4.40071309319178	4.20827145680886	3.83559214014987	4.46680506562702	-0.319327232234238	0.527742915866213	0.850108008834301
Merged-chr4-133353598-4	chr4	133353083	133354083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14268.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	5.65766709151802	5.8096242280242	5.6237290198422	5.57588752275052	5.50442065466322	5.45387788785645	-0.354642962627319	0.267734684772511	0.664975925109882
Merged-chr3-90111852-4	chr3	90111354	90112354	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 2 of 39)	intron (NM_029937, intron 2 of 39)	7722.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	4.23839062015671	4.00967328118367	4.11690041687393	4.11563580724832	4.14033085152724	4.23106500949742	0.0983251586813147	0.835820882074461	0.961862609869165
Merged-chr7-125574003-2	chr7	125573503	125574503	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 8 of 10)	ID_B1|SINE|B4	21721.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.12898955025609	3.08018304174617	3.31265640257226	3.28204147737367	3.15698853869929	3.63768430311352	0.783595137910401	0.22912684254025	0.62459659003044
Merged-chr9-32480442-2	chr9	32479961	32480961	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	60991.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.19527289359776	4.54260498545732	4.38813046314182	4.28275804330447	4.14841037309813	4.89700232526969	0.229174111458336	0.651570757296272	0.902860989743513
Merged-chr17-13945430-4	chr17	13944901	13945901	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2972.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	5.49686144929652	5.64925870617872	5.40828178899656	5.30447961146402	5.59197798412881	4.97816041335213	-0.369797051369651	0.325642016465024	0.718159390122652
Merged-chr17-25785416-4	chr17	25784923	25785923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026897)	promoter-TSS (NM_026897)	-85.0	NM_026897	68977.0	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding	5.62766412626848	5.71538244312981	5.94946473568147	5.9534826438221	5.87787323691314	6.09674754912976	0.375778484840593	0.225106980673411	0.620020317697454
Merged-chr9-103230449-4	chr9	103229930	103230930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-144.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	7.3102961927991	7.55084908532316	7.39285458148406	7.20929463816772	7.03419068881299	7.10030918128082	-0.462810758511024	0.0521465005013939	0.291835217495291
Merged-chr2-27405173-7	chr2	27404652	27405652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	22456.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	7.2275781005051	6.73659250031321	6.74796050027112	7.14024543565158	7.2057432383567	6.91504586786033	0.252699791814092	0.366926732446715	0.751972999808775
Merged-chr2-127831929-4	chr2	127831434	127832434	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-75.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	5.46420613064678	5.10761358696084	5.06027486123996	5.83010936563979	5.45474373103986	5.40152417866777	0.672434768113641	0.0713275900481095	0.35043848091185
Merged-chr15-83147536-2	chr15	83147036	83148036	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	MLTR12|LTR|ERV1	1842.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	4.65267861556726	4.09138538385365	4.68035455121691	4.4265060570238	4.37392809757667	4.70858772068957	0.0165150752241609	0.972679981304167	0.993868590220018
Merged-chr1-154104388-4	chr1	154103885	154104885	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-96802.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.96410784998826	6.89476460229539	6.71740267727746	6.43881467751041	6.829495416042	6.42158441778086	-0.433534589737229	0.121878177084926	0.467005043501857
Merged-chr4-132944922-4	chr4	132944386	132945386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-22335.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	7.78444290775726	7.84513086884598	7.41327066984989	7.67352441981339	7.67973517990284	7.21948148005577	-0.219462037145695	0.407364228102877	0.781499151361082
Merged-chr1-59464833-3	chr1	59464336	59465336	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17311.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	3.59937126547867	3.50853463506746	3.4823218210026	3.40508111663474	3.47211464173966	3.44188814992084	-0.339986434379611	0.554214815720037	0.862690232652377
Merged-chr11-52396694-7	chr11	52396260	52397260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153117, intron 1 of 2)	CpG	332.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	8.76999176230573	9.1229841256317	8.67971735606157	8.67395200972886	9.02032560861109	8.65548364274321	-0.106065464732148	0.65792579950541	0.904859102731141
Merged-chr12-91750942-3	chr12	91750430	91751430	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MLT1N2|LTR|ERVL-MaLR	35506.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	5.1434647739766	5.03426923018001	5.12427814815653	4.66243365607517	4.87748053106364	4.83585584451443	-0.660295952420721	0.0835937589735039	0.382673436762277
Merged-chr6-134036873-6	chr6	134036340	134037340	+	807.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	1140.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.4934202501838	6.47374737830625	6.3379965639963	7.01500644272436	7.02969116200831	6.58965949887888	0.728038521902442	0.0082413544563788	0.0878830061206876
Merged-chr17-74711017-4	chr17	74710531	74711531	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6719.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.82132018395086	3.75672749521665	3.79676994416122	4.67861489181323	4.97488449310531	5.11868941011661	3.16841169216569	9.28095027002028e-10	1.02966574675713e-07
Merged-chr10-88680355-3	chr10	88679825	88680825	+	848.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 2 of 5)	ID_B1|SINE|B4	2698.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	5.51917791977174	5.91952841672247	5.59108180629888	5.77932326076771	5.56976807728389	5.50758674080677	-0.127873441334061	0.705308535977342	0.922756484933722
Merged-chr2-4918385-2	chr2	4917885	4918885	+	827.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	-611.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	6.41787407506019	6.38008567159324	6.71870050821292	6.42696060769957	6.83808968773704	6.15471834687528	0.0206035517861217	0.948338462508255	0.988083630162243
Merged-chr9-116058290-2	chr9	116057790	116058790	+	628.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	117073.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.08374538272844	5.10510377785406	5.05552373043695	5.31496484814343	5.14769829157226	4.97440514178102	0.157974821840647	0.6655738513933	0.907855843812957
Merged-chr19-40993555-4	chr19	40993049	40994049	+	870.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 1 of 16)	RSINE1|SINE|B4	986.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	6.63449859968965	7.10120783108253	6.67933447118259	6.29199470777042	6.54674531754736	5.72424611793663	-0.924391513362261	0.00812905716649814	0.0869971175189682
Merged-chr17-64232529-5	chr17	64231941	64232941	+	919.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99442.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	4.94690658980074	5.15732112810345	5.13154751514938	5.45717404100955	5.44482288390549	5.35791629381414	0.693159490328056	0.0472642437829114	0.275365018673049
Merged-chr8-25600481-2	chr8	25599981	25600981	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1120.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	5.72703245769612	5.79816697814272	5.91764818960728	5.79658662406054	6.27946155249329	5.88239389525898	0.361477716199449	0.263632552368562	0.661550899207574
Merged-chr3-22091945-4	chr3	22091451	22092451	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	RLTR23|LTR|ERV1	15299.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.5225667783186	4.37787379036879	4.19030406245572	4.39651730879319	4.45604168976964	4.39996320922469	0.103274344718102	0.817567159619841	0.956767881392089
Merged-chr3-103913484-4	chr3	103912981	103913981	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356556)	promoter-TSS (NM_001356556)	-639.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	4.38732897966779	4.69264927448146	4.49365356597294	4.69262289699888	4.72808606475882	4.42737130267228	0.23422490773431	0.590182460261004	0.87713052060241
Merged-chr4-106300934-1	chr4	106300434	106301434	+	563.0	f0_balb.idr	Intergenic	RLTR28|LTR|ERVL	-15279.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	4.05217795657397	4.20773368087781	4.25760057801944	3.70150882930963	3.48031403742895	3.75995452353683	-1.71233988089443	0.00149105679029465	0.0246264099656287
Merged-chr14-61683069-2	chr14	61682569	61683569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-696.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.70630058853116	8.77296380025309	8.46305595380817	8.56165503119743	8.75816073068372	8.47892059712149	-0.0681152175625617	0.755232595787451	0.939266637440812
Merged-chr2-38481963-4	chr2	38481460	38482460	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1C|DNA|hAT-Tip100	-29737.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.27878007210899	5.84625627625149	6.26001295613113	6.06967518364313	6.16585920696332	6.2412709999611	0.0345917727815945	0.909728804240497	0.979601081144038
Merged-chr2-78995328-4	chr2	78994822	78995822	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125644.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	3.69740809061052	3.5310802920516	3.61561198500355	3.64765471777291	3.72704600366823	3.7383052085028	0.302193949641156	0.579019320369304	0.872437416842052
Merged-chr10-96185855-4	chr10	96185346	96186346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40361.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.4961110920511	4.53615660181898	4.76955826072151	4.59296604328406	4.37265318218513	4.68666776937521	-0.122653706947258	0.7761686612573	0.94480820353868
Merged-chr9-78443237-4	chr9	78442741	78443741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173386)	promoter-TSS (NM_173386)	-4.0	NM_173386	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	6.82183202558658	6.9665495085689	6.8147927377057	7.06289328526214	7.06455175096428	6.81175940879472	0.183853204724512	0.464033901590081	0.81611745436595
Merged-chr2-5116455-4	chr2	5115965	5116965	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21311.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	3.21050872788009	2.99825866892126	3.30526018314849	3.54987358145962	3.483224345452	3.43364559582828	1.28995729607857	0.0403324056983471	0.250147496522664
Merged-chr12-73905198-3	chr12	73904706	73905706	+	909.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313920, intron 1 of 14)	intron (NM_001313920, intron 1 of 14)	-2661.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.0511888697758	3.49953293237666	3.37321286937687	3.34055671745452	3.41453961882448	3.38892088161365	0.228120048244452	0.720874400331343	0.928324696220711
Merged-chr14-13971875-3	chr14	13971419	13972419	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10067.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	3.06349356108258	3.03686784891271	2.79323335462995	2.91035415361057	3.01895366650214	3.22738535798501	0.363117363077405	0.607651861320883	0.884653673877384
Merged-chr12-119372560-4	chr12	119372054	119373054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70856.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	5.70803611022849	5.68600094490823	5.66619664132001	5.8928425504409	6.08463428966573	5.75593670044594	0.432993117302814	0.162979694644782	0.536440444303918
Merged-chr1-64927233-2	chr1	64926733	64927733	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29591.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	6.73485174114934	6.98708020808959	6.68004935377894	6.81742802186723	7.02298732164752	6.67197083965377	0.063720165969767	0.812917062320781	0.955841430155734
Merged-chr8-46794131-2	chr8	46793631	46794631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	54386.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.45286871674181	5.10462219928506	5.71527649377087	4.91280517996969	5.0259482167589	5.33217744424618	-0.693952514794116	0.0783416037477736	0.369600735082199
Merged-chr4-99194148-4	chr4	99193620	99194620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145967)	promoter-TSS (NM_001145967)	-27.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	8.43011786391556	8.67944751828168	8.38505140681395	8.7127370225586	8.81972579321926	8.16697049451508	0.134261892734953	0.600632512511965	0.881747178918412
Merged-chr9-88959152-3	chr9	88958646	88959646	+	605.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	2226.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	3.48794285769993	3.66402192078135	3.57308428609745	3.86307868507489	3.72037757035892	3.75142672492518	0.680780976395687	0.213324814742893	0.606196206830948
Merged-chr13-75794958-1	chr13	75794458	75795458	+	722.0	f1_balb.idr	Intergenic	B3A|SINE|B2	-44927.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.13879339491098	4.4346576632441	4.63345874253118	4.63184564114069	4.59960970809306	5.13204951748843	0.93914078605954	0.0450439855823156	0.267715710880951
Merged-chr2-158146400-4	chr2	158145893	158146893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009373)	promoter-TSS (NM_009373)	-1.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	8.06913351665256	8.16351472295848	7.82356231362209	8.07327042247081	8.23022838518295	7.25517425671066	-0.140546084287046	0.647740450803773	0.901510214793849
Merged-chr2-27757242-2	chr2	27756742	27757742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	46659.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.44396875310583	4.48828999813862	4.93611865790932	4.17470595879398	4.32291241319128	4.76751553064749	-0.481470306706364	0.320551943600496	0.714352298545988
Merged-chr18-67449327-4	chr18	67448825	67449825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-189.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	5.79899785119188	5.75243237171082	5.35086754037074	5.79873181961414	5.60968051476496	5.63038864424904	0.0350770195208531	0.916884569876609	0.981431795618389
Merged-chr16-10953099-2	chr16	10952599	10953599	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38302.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	2.62275173589254	2.66485507984531	3.10314793484863	2.78229974495166	2.58257479464724	3.37829024123409	0.661360043541097	0.426912719824676	0.793904265858508
Merged-chr5-77013372-4	chr5	77012878	77013878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077218, intron 2 of 3)	intron (NR_077218, intron 2 of 3)	-2645.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	4.83576785743295	4.73397403620389	4.99272323443589	4.53447362221601	4.3881502522032	4.53662119703976	-0.881654943611033	0.0334667340878576	0.223365686210192
Merged-chr5-139465104-4	chr5	139464598	139465598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4564.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	6.85564091202218	6.77824649544516	6.40494220242364	6.66856727287689	6.50572919357035	6.50219735067864	-0.229143285334101	0.409851102579502	0.783037226945994
Merged-chr4-155235455-4	chr4	155234969	155235969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12934.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.85626049935344	8.08543425960084	7.84023187501722	7.77345410345724	7.95663566378941	7.95176178377303	-0.0558248315331763	0.80271198771083	0.953327896340994
Merged-chr5-66115682-1	chr5	66115182	66116182	+	618.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-17503.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.81247610894346	5.13376993303376	5.11161845254753	5.05685472388047	5.20031293199731	5.23983372621868	0.29815055785893	0.425319621901613	0.793032706839624
Merged-chr8-122576067-2	chr8	122575567	122576567	+	796.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009698, intron 2 of 4)	intron (NM_009698, intron 2 of 4)	840.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	5.43250560426106	5.26800393194945	5.69911463197443	5.39107071724401	5.30764667696416	5.63601287733849	-0.0487600038457654	0.890626394757009	0.974543890363888
Merged-chr12-8516015-1	chr12	8515515	8516515	+	548.0	f1_balb.idr	Intergenic	Intergenic	-16006.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.05644311882846	2.97771184788764	3.23185890377603	3.20502967824707	3.1103933351315	3.40975513350366	0.66088200214171	0.311999470180721	0.706860127829592
Merged-chr9-70542744-4	chr9	70542227	70543227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025690)	promoter-TSS (NM_025690)	12.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	6.96319364411655	6.93217367899932	7.20794268641034	7.13805120931049	6.9787558798241	6.84472992580893	-0.055285968166051	0.828008907353491	0.959607854967049
Merged-chr11-69689228-4	chr11	69688723	69689723	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-3669.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	5.62855293493471	5.13544747934743	5.60437536397992	5.68591506960922	5.38481075479044	5.63988538775505	0.191206772756949	0.597408458296703	0.8803847297868
Merged-chr2-173770852-2	chr2	173770367	173771367	+	808.875	f0_balb.idr|f0_c57.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	33296.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	4.66071514228332	4.41712293312932	4.83762984134816	4.3507365842994	4.74951876140195	4.75873796401367	-0.0176551923322996	0.968391479171847	0.992776669007643
Merged-chr13-28958659-6	chr13	28958148	28959148	+	877.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	5.7293358025609	5.34417250740075	5.46046537951176	4.63516848625815	4.74152610825518	4.59567940712847	-1.82212007702681	3.73662696349747e-06	0.000171587889833718
Merged-chr1-156559357-4	chr1	156558873	156559873	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	CpG	586.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	8.09298907819734	8.39610737907311	8.08521583853305	8.43795373027568	8.60847391858797	8.35711293524021	0.379605703076066	0.091127545746651	0.401708887647408
Merged-chr15-38259446-4	chr15	38258947	38259947	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	40244.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	4.40490446209872	4.29609672501547	4.42434149529269	5.33004615695735	5.64213316825481	5.0058853453655	2.23615836917396	1.22479102815529e-07	8.58571287874857e-06
Merged-chr5-122268198-4	chr5	122267685	122268685	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3725.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	5.60964144981597	5.36414846376348	5.74304212828333	5.93862552500032	6.13749842208959	5.64299750449701	0.655218054651891	0.0524750764106958	0.292945062595181
Merged-chr19-18600434-3	chr19	18599933	18600933	+	782.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 2 of 9)	intron (NM_017375, intron 2 of 9)	31380.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.5118877548136	3.1958813404569	3.41384189436995	3.14908063239552	3.02370940969083	3.26413347421272	-0.988182572240025	0.126432168505821	0.475355519288444
Merged-chr16-38679587-5	chr16	38679161	38680161	+	955.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	33374.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	6.16577785131578	6.39535139038841	6.37123195621935	6.49680863077257	6.84802252626804	6.69051135929582	0.609582898214162	0.0284841187672191	0.202072346694754
Merged-chr12-34692544-1	chr12	34692044	34693044	+	781.0	f0_balb.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-163655.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.72360401733136	4.13684067800685	4.08883246865478	3.81627085823272	3.50351490700801	4.15624762705751	-0.456216981968313	0.432276266951393	0.797270167804312
Merged-chr1-43936132-3	chr1	43935640	43936640	+	617.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2146.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	5.64359717665959	5.51338178213201	5.38609740130763	5.53629209977526	5.93700794079422	5.57191115777948	0.338380333849959	0.321900591191189	0.715327005443768
Merged-chr1-127135501-3	chr1	127135023	127136023	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.80909807614991	4.84243495652389	5.27514218073552	4.83337768572677	4.77579260601106	4.88891533220889	-0.331312876943691	0.411831255999147	0.784085098599145
Merged-chr6-72152822-4	chr6	72152284	72153284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-29587.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.33338753738166	6.4558401796926	6.54895982491349	6.21711527483059	6.49570838222751	6.16858803611708	-0.213899540380569	0.452729293891861	0.809457484278845
Merged-chr18-61110216-2	chr18	61109716	61110716	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 3 of 21)	intron (NM_001037859, intron 3 of 21)	4644.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.05707418080018	4.91977942319237	5.77841628112363	5.26909464720092	5.38490568229467	5.60206759099345	0.243780179147609	0.56209986569024	0.86560636450104
Merged-chr2-165334636-2	chr2	165334136	165335136	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-8157.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	3.41969852035581	3.13359668881791	3.3670860647159	3.55490493721764	3.10432425059453	3.43871072541873	0.25315148271032	0.695784510130129	0.919291538728398
Merged-chr11-60829219-2	chr11	60828719	60829719	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-1412.0	NM_001172112	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	2.36834948439191	2.33205125423028	2.5139868465704	2.3431123743554	2.22880000402566	2.4631890211951	-0.389095832787224	0.640612467294259	1
Merged-chr17-56327492-2	chr17	56326992	56327992	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	1442.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	2.16175928761117	2.05934774455889	2.22577537825743	2.01179922868908	1.86168979917947	1.9662949231504	-1.71209208984108	0.0823061433081741	1
Merged-chr18-62227773-4	chr18	62227298	62228298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47698.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.87902642169314	5.47814784792305	5.39396489866912	5.51602901664135	5.67939475873774	6.12781141073325	0.332813992244941	0.368033646501862	0.752989836438736
Merged-chr1-80340924-4	chr1	80340442	80341442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313728)	promoter-TSS (NM_001313728)	-252.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	6.91565142527892	6.69439995916943	6.916659612996	6.98377283093134	6.65978418876985	6.9473265326871	0.0341086168178299	0.897131210832688	0.975955240159241
Merged-chr3-96098315-4	chr3	96097826	96098826	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	4.17089814377643	3.69055625003211	3.94135781848414	4.13869785693701	4.05687146890908	4.20049573845376	0.520846029974711	0.315531798560165	0.709834518424648
Merged-chr19-44562810-4	chr19	44562348	44563348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176958)	promoter-TSS (NM_176958)	-6.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	4.90638165512217	5.03113798690145	4.92655409732324	4.90158693367257	4.82459512542626	4.76302890799978	-0.277210928448509	0.467360072024472	0.817936383851132
Merged-chr5-120613004-4	chr5	120612503	120613503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-127.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	8.54667669009339	8.49206663313591	8.14066924507894	8.42685920449449	8.423333122917	8.20318870080619	-0.0735406970391562	0.747676354670894	0.936669539129704
Merged-chr6-114257846-2	chr6	114257346	114258346	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24789.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	6.26260900744535	6.19761136532603	5.77468750607892	5.87554367170761	6.23427155256796	6.15166696039197	-0.01533775894641	0.961747617997605	0.990671368065669
Merged-chr11-48913803-4	chr11	48913307	48914307	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 2 of 2)	intron (NM_001045540, intron 2 of 2)	-11655.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	3.36909410532486	3.48073934722295	3.45524538987019	3.24310062190783	3.37858183087047	3.36053089801766	-0.409222242079523	0.493046126377626	0.831208279358962
Merged-chr1-131067183-2	chr1	131066683	131067683	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	30660.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.06611495003443	3.87432289433545	3.91818853070905	4.14876209926396	3.695041268123	4.3059861568823	0.323214980654387	0.550444776583826	0.860709619458349
Merged-chr1-43911988-4	chr1	43911470	43912470	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22024.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	7.0334866490292	7.10814178909706	6.95178304757732	7.37497017322652	7.50576735121668	7.06590017216647	0.452623900476523	0.0736322286414849	0.356610683501834
Merged-chr19-46043576-2	chr19	46043076	46044076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	1735.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	3.89459601364073	3.60171463202686	3.97299536148582	3.75191586650257	3.72908425793377	3.89982036073117	-0.114962139204262	0.831273800275268	0.960444904168444
Merged-chr4-141538003-4	chr4	141537408	141538408	+	882.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	CpG	689.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	7.44971883321752	6.84544344175019	7.29402206250938	7.19005932976325	6.76653324190444	7.05260379255701	-0.315535192219591	0.277445724259017	0.674645776444206
Merged-chr13-21788064-2	chr13	21787564	21788564	+	695.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178184)	promoter-TSS (NM_178184)	576.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	5.05210584910889	4.97886821479264	4.80154264810249	5.10779337006828	5.43955018986224	5.49919232422921	0.826655760343301	0.028336200492455	0.201502136757209
Merged-chr7-90476857-1	chr7	90476357	90477357	+	812.5	f0_balb.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-862.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	4.90025811977171	5.31603327502735	5.11059435071865	4.87369637085244	5.02529152186783	4.63629792901381	-0.547521144380775	0.178820826606979	0.560152217005366
Merged-chr10-99266142-5	chr10	99265719	99266719	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 3 of 3)	exon (NM_026268, exon 3 of 3)	2988.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.60967364784743	6.87043653833526	6.53340099414203	6.89920368838639	6.76977030459812	6.83771847114174	0.229714471533568	0.382559384776184	0.764107846408276
Merged-chr19-8965869-2	chr19	8965369	8966369	+	657.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_197993, exon 9 of 9)	exon (NM_197993, exon 9 of 9)	-1172.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	5.81146136916018	6.24307440868961	6.2242078756275	6.00331883423557	5.92255854675637	5.91354069420634	-0.271637161101325	0.382008193009992	0.763704325315957
Merged-chr7-137404874-2	chr7	137404374	137405374	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	RMER5|LTR|ERV1	5882.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	3.64400515938191	3.52623295083086	3.85886419410707	3.73164582245073	3.89625329887027	4.02017686647145	0.684368231829215	0.208204471957211	0.599041414336639
Merged-chr4-132803748-3	chr4	132803244	132804244	+	808.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7380.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.16887743441906	6.13054410544924	6.3423079758576	6.65419924287329	6.77989788875036	6.47736360999161	0.719745798058643	0.00874287479450932	0.0917604851036241
Merged-chr8-40647960-4	chr8	40647480	40648480	+	895.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13188.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.08635899998364	2.89254521522611	3.1384288679338	3.64559972760708	3.7352112264421	3.6673366917185	2.80258591747761	4.35523804790603e-05	0.00140953188444249
Merged-chr11-118231149-2	chr11	118230649	118231649	+	743.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B4A|SINE|B4	17443.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.98448382057634	6.75017478681756	6.85886768729003	6.66042146014813	6.95663516568664	6.87378946368986	-0.0449944162134114	0.862363932492018	0.96804784003556
Merged-chr1-171659811-1	chr1	171659311	171660311	+	675.0	f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-6774.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	3.88798162268753	3.90480932904542	3.38235607999194	3.72485894143395	3.30293420487421	3.79500299716731	-0.424584014369127	0.504830186915375	0.837836810464043
Merged-chr5-74951513-4	chr5	74951016	74952016	+	869.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	2322.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.80074387455093	3.55987321888291	3.82459867517627	3.4927194658491	3.48301215816738	3.84538131029828	-0.415071873512777	0.468558984640482	0.818673566064062
Merged-chr11-102246450-4	chr11	102245945	102246945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2437.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	5.91770136578538	5.89605733964713	5.59401103570994	5.74383751329611	5.62313067303756	5.47735426843066	-0.359990451450176	0.267572999062304	0.664794074914354
Merged-chr1-135723844-2	chr1	135723344	135724344	+	639.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	3781.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	2.85319232357512	2.63853922549351	2.89520211498506	2.91115928338936	2.88709525465497	3.19434107411493	0.987790767133774	0.174032241551291	0.553210993472106
Merged-chr14-63436493-4	chr14	63435983	63436983	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177628)	promoter-TSS (NM_177628)	89.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	6.85832550410416	6.88966329651752	7.02108785530697	6.84796424423115	6.78553854807102	6.71949169025141	-0.205077287868705	0.40685780004179	0.781121915687061
Merged-chr18-66461175-4	chr18	66460649	66461649	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	2545.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.08254697034242	3.1452382057074	3.27432215973659	3.23344665474517	3.12631948301905	3.05583101828815	-0.0995066840857288	0.877207303639003	0.971507742080987
Merged-chr8-119828934-2	chr8	119828434	119829434	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	11645.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.42548861652013	4.37486424597847	4.6695507903822	4.2224337295568	4.26701935225968	4.54533070671997	-0.371132358272077	0.412968929194205	0.784725209448945
Merged-chr17-35232241-4	chr17	35231727	35232727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2783.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	5.73626405701559	5.38776572930512	5.54224907079422	5.26468985219646	5.65699242874698	5.39830736201259	-0.198859013835054	0.574154746180877	0.870523174873875
Merged-chr7-142386835-4	chr7	142386337	142387337	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1033.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.00158083039646	7.38899461550235	7.14015762791526	7.66540873829517	7.74053061362617	7.2107051021487	0.556737226268801	0.0400574965661722	0.24915702786975
Merged-chr8-53626323-4	chr8	53625857	53626857	+	975.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	intron (NM_146208, intron 1 of 9)	12708.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	4.1687342060547	4.35941673205436	4.44155452184961	4.69535902576817	4.56948841952942	4.70863716424209	0.835949421594676	0.0539626318456271	0.298010398261827
Merged-chr15-61985280-7	chr15	61984798	61985798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-43.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	7.14613528263383	7.17271164881728	6.9883721231868	7.05967576858991	7.23509596361612	7.11267683077659	0.0472754822855653	0.843925150229388	0.963679834808661
Merged-chr1-74308820-4	chr1	74308335	74309335	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	RMER2|LTR|ERV1	-4499.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	4.80193174371243	4.59117330592338	4.5211553724314	4.66752969151466	4.59544054328036	4.50121562332185	-0.135949548013266	0.74605574713981	0.936260355453809
Merged-chr7-29128982-4	chr7	29128459	29129459	+	843.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3808.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	2.87062276278672	2.86520838691556	3.20599571505736	3.16700420170015	2.93070695511879	3.33029355620671	0.729612786714685	0.298322805109752	0.69500092474273
Merged-chr10-19669104-4	chr10	19668598	19669598	+	915.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43489.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	3.16175193209161	2.94163501662444	3.0904578642476	2.79958455442194	2.9094018725927	3.04683194185824	-0.695030718702841	0.315644010660707	0.709903899908234
Merged-chr2-45126905-2	chr2	45126405	45127405	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9463.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.05665846112407	3.22662325943097	2.88708642051954	2.97989282102547	2.99486478461716	3.08440773506453	-0.236320436346016	0.730008687106141	0.930720808358785
Merged-chr7-98314160-3	chr7	98313662	98314662	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	-4620.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	4.18317601172304	4.18061765498082	4.26014681809589	4.15532010346731	3.90332232569464	4.23958961580945	-0.309004869448144	0.521097589142864	0.846922225237145
Merged-chr18-39763678-4	chr18	39763194	39764194	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9803.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.06908316121241	4.12119106086069	4.07611519980351	4.15437279261209	4.2108881268264	4.28187657914455	0.350696540198414	0.452507124408601	0.809456767794566
Merged-chr2-12745495-3	chr2	12744987	12745987	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178554.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	2.86661640674659	2.8674681968591	2.83714740345029	2.5605807997547	2.67859152440979	2.72545196808723	-1.09045960411166	0.143828982357092	0.506290928785533
Merged-chr17-34862676-4	chr17	34862173	34863173	+	948.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142706)	promoter-TSS (NM_001142706)	-159.0	NM_008198	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	3.89381043572258	3.79882167889881	4.05677266665796	4.6516074552903	4.38630198082189	3.97197235249182	1.29032750092143	0.0128518139921487	0.119992564930286
Merged-chr4-141642258-4	chr4	141641772	141642772	+	949.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 3 of 18)	intron (NM_001347237, intron 3 of 18)	-18438.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	5.72192977224504	5.86309320255673	5.80506178875358	6.85220008974696	7.0523805504328	6.40006605442297	1.66878488268515	5.9390665740392e-08	4.47624865482476e-06
Merged-chr3-98057141-4	chr3	98056629	98057629	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	43591.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.83636138941032	4.74428288790169	4.48954382003235	4.16050002692635	4.08409196793504	4.28741337463374	-1.38801167422571	0.0020919996767733	0.0319689823884211
Merged-chr11-100343831-4	chr11	100343352	100344352	+	989.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	9445.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	8.20166503770386	8.10642067728263	7.87058152895039	7.93941583562225	8.38112045409927	7.6954202684817	-0.032003610410299	0.905164000972223	0.97825170530197
Merged-chr13-5716479-2	chr13	5715979	5716979	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141613.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.56433276198661	4.74825488211208	4.6878456694672	5.07689945296135	4.93021999438672	4.87186130515739	0.668035542853943	0.0895928458542587	0.397744215403551
Merged-chr15-81852123-1	chr15	81851623	81852623	+	581.0	f1_balb.idr	intron (NM_020507, intron 1 of 1)	B1F2|SINE|Alu	6203.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	2.85291883385064	2.71183648514673	3.13866614669589	2.83180326470796	2.77767593077054	2.80663894820709	-0.503080012045621	0.491551675642659	0.830577684235539
Merged-chr11-58107212-2	chr11	58106712	58107712	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	2983.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.80769539270249	3.64266717657188	3.66080883515459	3.23761971894591	3.03436657654849	3.68047351553874	-1.37923131032047	0.0391497117003394	0.245405684214279
Merged-chr8-35136797-3	chr8	35136290	35137290	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-171100.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.86534043168952	2.75317299739418	2.89460963812538	3.41610563483933	3.03019667845302	3.3784876158089	2.09671212091856	0.00371195491760769	0.0492241606321593
Merged-chr15-88744525-2	chr15	88744025	88745025	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7186.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	4.33573753541769	4.14247479648158	4.69843156744053	4.37708344493236	4.39219529328775	4.49765673136516	0.0526601029861171	0.910212582992802	0.97984424692051
Merged-chr2-6713723-4	chr2	6713241	6714241	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	7921.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.24860591673256	5.1519418838098	5.28765126602536	5.10421739681089	5.21260783929912	5.08884487873566	-0.17482891421084	0.621109118544699	0.890533954851765
Merged-chr8-126595644-4	chr8	126595104	126596104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.30426519911765	8.43502881416812	8.17130065398605	8.18192286103679	8.56839111423168	8.10856771037709	-0.00139453794003458	0.995339500645289	0.998961028701257
Merged-chr2-132021172-2	chr2	132020672	132021672	+	705.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	8816.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	4.73860718757635	4.88819856617355	5.31367265107758	4.89317992231294	4.67468140336124	4.75197240535822	-0.480381966071459	0.251493168777114	0.648977062369525
Merged-chr18-67699234-2	chr18	67698734	67699734	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25387.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	6.4953208334167	6.52202679267002	6.49591491669122	6.73140039838725	6.86426762295557	6.84419352512025	0.492150905224854	0.0517045856161304	0.290162214874686
Merged-chr7-128738177-4	chr7	128737676	128738676	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2253.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	5.37439212894101	5.28978221000504	5.46165872191425	5.66656691187217	5.87817918104191	5.37003056423181	0.564563601771331	0.102740131328654	0.427440042379732
Merged-chr7-109987029-3	chr7	109986559	109987559	+	956.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-829.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	6.90003697062082	7.4491495018325	6.98860418518947	6.91790085788888	7.62448755820199	7.07416895177154	0.16612959765684	0.598842391741691	0.880844238576651
Merged-chr13-80881917-4	chr13	80881409	80882409	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1475.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	3.9378054397516	4.007347180952	4.13636808458687	4.12230788572901	4.25650677461638	4.15833727365714	0.459642220341817	0.335988788081172	0.726090328603253
Merged-chr19-46959807-2	chr19	46959307	46960307	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	2544.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.18302881214067	4.07744740841195	3.7204157137481	3.6819113108052	3.68842316686004	3.89814165077508	-0.82499171929122	0.128533615828112	0.479597538377825
Merged-chr12-111164650-4	chr12	111164141	111165141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1729.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	5.18639946285479	4.78376520976468	4.36087482723965	4.58308370484851	4.4809630686967	4.52604080702467	-0.707916845600116	0.129630244422148	0.481622840280538
Merged-chr15-73423903-4	chr15	73423401	73424401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358045)	promoter-TSS (NM_001358045)	-710.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	7.65294380591088	8.19462957653518	7.86891308045173	7.9987127364862	8.337351382931	7.95690526323891	0.263159458741049	0.31133886508568	0.706465219571547
Merged-chr11-117960192-4	chr11	117959685	117960685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9181.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	8.1305732739003	7.84231234848685	7.36445478098848	7.54160070660534	7.56472161988536	7.48803128912417	-0.424305998278869	0.119422252936074	0.461922964963966
Merged-chr15-100729471-4	chr15	100728945	100729945	+	972.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161767)	promoter-TSS (NM_001161767)	-69.0	NM_172451	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	7.73182432432541	7.80531960269563	7.42789087897668	7.43582150856299	7.43545879140205	6.91548010934051	-0.548986858024098	0.0427635469366474	0.259284956081144
Merged-chr5-31887728-4	chr5	31887225	31888225	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	189675.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.04622997946597	3.85966743580782	3.92488771609534	4.04417730197962	3.81362659214438	3.94452995158654	-0.0398429582852672	0.937434447646572	0.986057836872162
Merged-chr11-69260933-4	chr11	69260416	69261416	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23894.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	7.02034898679877	7.27167523155686	6.87095735789369	6.93784815122763	7.33027104543949	6.77225776579098	-0.0358723000216784	0.900192443319202	0.976728292075907
Merged-chr7-98360670-1	chr7	98360170	98361170	+	1000.0	f1_balb.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	618.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.95706460692715	7.06369474169019	7.05268863544195	7.13107887951242	7.12570188897064	7.13590020724364	0.160988467820811	0.492753510611553	0.831208279358962
Merged-chr14-47472546-4	chr14	47472035	47473035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030236)	promoter-TSS (NM_030236)	-26.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	8.51004544409657	8.33849375113456	7.97264034328794	8.1739683334335	7.83740858390848	7.95054184253468	-0.433295451904407	0.0824304056165657	0.379666088554908
Merged-chr9-94688684-2	chr9	94688184	94689184	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	18792.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	3.91812558708749	4.14914199073158	4.46925390984583	4.13343412570097	3.77116289368675	3.98843139243412	-0.65736031932819	0.216437280321129	0.609925696753694
Merged-chr7-126667701-3	chr7	126667198	126668198	+	768.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 4 of 9)	L1MC4|LINE|L1	8720.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	3.58082402735469	3.48894720378255	3.41111340524538	3.16199551268519	3.46768468591812	3.24952326493194	-0.72806725552818	0.244707016766766	0.642068650565651
Merged-chr2-83729540-4	chr2	83729044	83730044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5147.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.81100009874432	5.12312500318376	5.26060247595731	5.68180656759426	5.27488233663036	6.03724755294584	1.20886545681202	0.0026925949686572	0.0388081781676027
Merged-chr8-125560992-4	chr8	125560494	125561494	+	995.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	8869.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.64704481020028	3.44011018336782	3.78307065474978	3.77949827838706	3.68572681805285	4.12478276983883	0.801347434619035	0.157934779567475	0.529476893092205
Merged-chr17-87985040-4	chr17	87984540	87985540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9990.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	6.80768992298821	6.94583825675032	6.88589738502939	6.92382883846958	6.92418755523144	7.02600219828009	0.11439482695142	0.638106294912655	0.897380718500389
Merged-chr5-76525936-3	chr5	76525451	76526451	+	950.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-3356.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	4.82143063551992	5.27926482302428	5.37814625700451	5.19924820854478	5.15145682165687	5.60071700313819	0.296724293104372	0.457082700641342	0.812004739475898
Merged-chr1-57639267-3	chr1	57638762	57639762	+	970.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135599.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	4.2894994146178	4.56242191168254	4.26476443720374	4.03107485221879	4.10291585390788	4.09578102691438	-0.848051913100814	0.0731386390417188	0.35544928500291
Merged-chr2-155098885-2	chr2	155098367	155099367	+	634.0	f0_balb.idr|f1_balb.idr	non-coding (NR_040634, exon 3 of 3)	non-coding (NR_040634, exon 3 of 3)	1212.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	3.28458041176533	3.2677454270961	3.62588284456651	3.47811400356895	3.69883996771433	3.84001170999342	1.02858102412907	0.0879423941796185	0.393486225567371
Merged-chr2-165285340-2	chr2	165284840	165285840	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	2447.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	4.01843246937379	3.75084794599452	3.72765262804114	3.81016586291817	3.37874366397196	3.74580658893216	-0.626749929057474	0.278282433735618	0.675555045695919
Merged-chr5-95898162-4	chr5	95897643	95898643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58796.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.33602112426083	4.56761399831351	4.22528602177493	4.28046965838872	3.96804355010231	4.42664509598254	-0.43361319756105	0.372181956407395	0.756099728816208
Merged-chr14-40932440-3	chr14	40931929	40932929	+	904.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	15780.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.99746410085818	5.28773332493228	5.40442532470264	5.07950711764869	4.98323324684167	5.06178193597869	-0.404406239866086	0.277439553968342	0.674645776444206
Merged-chr2-112265623-4	chr2	112265126	112266126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	-688.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	6.97645725439125	7.19817127221814	6.97541476757866	7.16278238900023	7.21391167379224	6.97743745501776	0.105505500835991	0.670118555802334	0.909894172601632
Merged-chr11-97555468-4	chr11	97554961	97555961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	19665.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	5.69382001213111	5.42078737614783	5.61025593663956	5.82742768644073	6.00689913982555	5.55759832863472	0.44842263060231	0.179250137827426	0.560780311857825
Merged-chr5-118615645-3	chr5	118615160	118616160	+	666.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54941.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.03980319484274	3.15016942006185	3.25118326438674	3.03640880081553	2.81885193695075	3.03868220584517	-0.844265792853075	0.215066445682889	0.608376069948362
Merged-chr10-44630517-6	chr10	44629990	44630990	+	839.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171742.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.33445806960207	7.71720833930423	7.29802231618121	7.21005864942424	7.51324738958599	7.4950921109144	-0.0835133166014594	0.746918388878257	0.936426570480179
Merged-chr1-105169880-4	chr1	105169382	105170382	+	955.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186125.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	4.60383270786356	3.99287931770887	4.52989547416415	4.62486704409815	4.71309945288389	4.51327149076853	0.548088175696688	0.252498877446174	0.649921954382832
Merged-chr11-115678598-2	chr11	115678098	115679098	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	RMER6A|LTR|ERVK	20936.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.58333525117963	4.59383275228515	4.82890387714973	4.9939831555328	5.06955611288747	5.03589159964723	0.836401997245571	0.0311941438670799	0.213923982995459
Merged-chr11-118479168-2	chr11	118478668	118479668	+	592.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172573, exon 3 of 14)	exon (NM_172573, exon 3 of 14)	2336.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.48696914421479	5.64508855908904	5.45401159680989	5.58311534008086	5.25447128257225	5.19342280786458	-0.342360458817858	0.326609580035732	0.718879746471621
Merged-chr3-65397397-4	chr3	65396892	65397892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	4.76175003706613	4.84844601776286	4.60652469222035	4.72018999310224	4.58075451097121	4.97196656464314	0.0142376839575975	0.972626312386665	0.993868590220018
Merged-chr8-39638046-4	chr8	39637506	39638506	+	767.224976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	4672.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.01171199446559	5.11373708530965	5.16652762581552	5.07708360628318	4.92844136514766	5.49080386073346	0.159758765473954	0.680694383557285	0.914391176698114
Merged-chr1-171378116-1	chr1	171377616	171378616	+	626.0	f0_balb.idr	intron (NM_001122680, intron 1 of 7)	L2c|LINE|L2	7943.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	2.88407990294271	2.89158675432785	2.91920259990147	2.73636570919237	2.63463201436147	3.04863915925658	-0.435417514355399	0.554157882138153	0.862650023515518
Merged-chr19-43511271-3	chr19	43510757	43511757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	13348.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.85696102477278	8.04522091187836	7.68789301092242	7.85392444664286	8.02908957704103	7.87409619087192	0.0662507339497803	0.772380203502523	0.943716660313239
Merged-chr17-87083439-2	chr17	87082939	87083939	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-24240.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	4.90056657854883	5.03145722541158	4.94453045608338	4.93636170037272	5.02544751766326	5.44394887718676	0.383494000445643	0.326084698134903	0.718541764317922
Merged-chr8-120685011-2	chr8	120684511	120685511	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16691.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	5.26647317230953	5.46117108382626	5.86733808036219	5.49395458964822	5.20515338269194	5.29605016598724	-0.403113123055723	0.278001310626006	0.675345470470884
Merged-chr10-50690486-4	chr10	50690003	50691003	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	MTC|LTR|ERVL-MaLR	97834.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	3.6162454763674	3.29559101230481	3.41748507512018	3.34087016114134	3.09072521173808	3.64461851043932	-0.299811124637233	0.644724095476557	0.900287351502017
Merged-chr11-3180811-2	chr11	3180312	3181312	+	954.25	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	PB1D10|SINE|Alu	12651.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.65214087607007	4.95464358863795	5.31914782701167	3.77709903383133	3.58873168494196	5.35644042649302	-0.89190920553702	0.572478470845736	0.869840399318717
Merged-chr10-125382752-2	chr10	125382252	125383252	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53789.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	2.91930904697676	2.86318263531104	2.88938759646297	2.60277173661341	2.49425885435585	2.71815298809184	-1.64814002134827	0.0333762594338435	0.222961114688827
Merged-chr19-11081151-3	chr19	11080634	11081634	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022430)	promoter-TSS (NM_022430)	-31.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	4.44748017161017	4.59454349453078	4.52998951969868	4.71053896349994	4.66007680241845	4.42173157560571	0.20851185751683	0.623479010999982	0.891427938597819
Merged-chr7-110772724-4	chr7	110772234	110773234	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009667, exon 1 of 15)	5' UTR (NM_009667, exon 1 of 15)	130.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	5.85750327082352	5.51129340320801	5.84466477464086	5.67245822008199	5.5728841505298	5.73312032315815	-0.159072356331108	0.625319222213169	0.89246806537449
Merged-chr6-72599343-4	chr6	72598842	72599842	+	863.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144917)	promoter-TSS (NM_144917)	714.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	6.08499400334524	6.22429413388423	6.21628645502179	6.06520017073712	5.98937416311572	6.2159103034628	-0.152979721659291	0.593133076025942	0.878410931874355
Merged-chr5-137076297-4	chr5	137075807	137076807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4035.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	4.42288088199458	4.5435489055786	4.67132873426582	5.06523770300131	4.88194811675569	4.73816588795022	0.846090733822904	0.0389543261873901	0.244739069615078
Merged-chr7-24884051-4	chr7	24883615	24884615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-477.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	6.27569999861411	6.5272638835799	6.95377852339735	6.50636723787238	6.58637780873735	6.98646677702382	0.152541411732045	0.631294248055201	0.895122791781359
Merged-chr15-59486301-4	chr15	59485802	59486802	+	885.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	112104.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.8532123935069	4.06144696981029	4.00821210225309	4.15360834528805	4.00070505992963	4.25934444995454	0.460220418352611	0.350878773840335	0.738819268003811
Merged-chr6-29164746-4	chr6	29164254	29165254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133925)	promoter-TSS (NM_133925)	-30.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	6.36029698648437	6.36165802413322	5.87126751302744	5.89211427888693	5.94064865357167	5.62466269445227	-0.676156817192987	0.0372973629803078	0.238341062811262
Merged-chr15-100747162-3	chr15	100746660	100747660	+	952.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14423.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	3.18146873929949	3.01009959185392	3.33813401845421	3.31920720605691	3.00958445106927	3.12679257161905	-0.0910997920253148	0.890860004415745	0.974581703799143
Merged-chr1-54888696-4	chr1	54888158	54889158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MLT1J|LTR|ERVL-MaLR	37729.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.65218718412302	5.61245131621479	5.60744086360243	5.29200051619038	5.11078878785497	5.53363699827731	-0.611869070967337	0.0740419017319142	0.357899300529169
Merged-chr3-79253295-3	chr3	79252818	79253818	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40399.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.69178186132264	4.93986719876087	4.97499015521721	5.74669349865134	5.88289637608873	5.6444832078896	1.79266866383247	4.45317470797111e-07	2.65239628561818e-05
Merged-chr4-118437925-2	chr4	118437427	118438427	+	684.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-584.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	4.3895154533909	4.30540528169781	4.47219275078228	4.64924284851039	4.63564674852839	4.77454146240317	0.737364253614706	0.0800291877563002	0.374148866069054
Merged-chr3-159841732-2	chr3	159841232	159842232	+	677.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	2082.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	3.40676587216336	3.36656213116178	3.43234827693286	3.07921053994926	3.26765250500617	3.16305997892836	-0.914316797879446	0.146755752818387	0.511102154717578
Merged-chr10-115328781-4	chr10	115328291	115329291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70B|LTR|ERVL	-13200.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	5.71935750248228	6.20330111018775	6.1397655676418	6.11757040856095	6.4708691994818	6.5012751568104	0.566076846290426	0.075383694186207	0.36159125428477
Merged-chr9-44460788-4	chr9	44460303	44461303	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6036.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	6.80355536294843	6.71656705322119	6.45729151772	6.94863255560312	7.10462345564997	6.76337884907079	0.431432742807139	0.109185701020288	0.441539843045107
Merged-chr10-108163002-5	chr10	108162447	108163447	+	970.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	547.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	7.25738202727157	7.51256980484309	7.33603269253544	7.18303867009849	7.363667489097	7.41465372666039	-0.0782998556342083	0.743497327638136	0.935657324217812
Merged-chr7-24462996-4	chr7	24462494	24463494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011113, intron 1 of 6)	intron (NM_011113, intron 1 of 6)	511.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	6.34325880823143	6.52641577845078	6.98418745394474	6.2581396707396	5.81831474349	6.32139429641571	-0.812782227370274	0.0142464239052601	0.128264059760754
Merged-chr6-122812322-2	chr6	122811822	122812822	+	875.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-7862.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	5.97039404156327	6.23616518280365	6.29922013259173	6.40161938871604	6.36586436303873	6.39677557254378	0.360202787880238	0.202216528492385	0.591924044986784
Merged-chr11-55033416-4	chr11	55032885	55033885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110211)	promoter-TSS (NM_001110211)	86.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	6.11993263570938	6.66767612009812	5.94767341395457	5.99338633829747	6.10497249505503	6.21389166401509	-0.32194643320761	0.334359550411124	0.724892899182094
Merged-chr2-150749575-1	chr2	150749075	150750075	+	1000.0	f0_balb.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	494.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	7.92963360442233	8.21031495990738	7.93919185314483	8.11342342839975	8.25421773642314	7.99506791867803	0.131958378375718	0.560106231992693	0.865168135946323
Merged-chr2-154658735-2	chr2	154658235	154659235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	B1_Mur3|SINE|Alu	1709.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	7.10080377089076	6.80156039290548	6.6135495528121	6.7810585679986	7.04932168110845	6.58351426547115	-0.0502192522157925	0.862448026538587	0.96807605498315
Merged-chr6-97312088-2	chr6	97311588	97312588	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-59308.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.69252426065418	3.3742466651821	3.60898067512932	3.29151182062566	3.42487201942182	3.67842157175513	-0.346443725433216	0.565766147058372	0.86688237163883
Merged-chr10-17721172-4	chr10	17720722	17721722	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.73612134322157	5.48975882195072	5.70093544812405	5.62265706322212	5.52755541717039	6.15959880690553	0.26095751083559	0.463183579506238	0.815698978949265
Merged-chr5-99226082-2	chr5	99225582	99226582	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	L3|LINE|CR1	26845.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.55870738407919	3.75091789483966	3.87626721524783	3.66550190565776	3.68373891986363	3.89718466985024	0.0582096854334732	0.915180352657747	0.980959026698783
Merged-chr11-86483254-2	chr11	86482754	86483754	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1403.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	4.49820149400157	4.26565004316542	4.15271722564774	4.09276558299221	4.39523160642362	4.17346292932313	-0.226712478931357	0.636718761445579	0.897237750683575
Merged-chr6-57812579-4	chr6	57812093	57813093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	L2a|LINE|L2	12532.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	4.04798995900631	3.96850643139654	3.97544639279021	3.8067905856805	3.85482354012841	3.99599373865884	-0.353901212051105	0.480051512401639	0.824474204175932
Merged-chr6-83635342-3	chr6	83634865	83635865	+	729.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	20751.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.74309783067237	7.13895549674898	7.44132643429267	6.95732376196249	7.07341941141174	6.88657961352932	-0.233335774405692	0.41556132062537	0.786525632158765
Merged-chr5-99211360-2	chr5	99210860	99211860	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	41567.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.49360485957824	2.38659948986585	2.5390925086346	2.26101732461589	2.18320117380952	2.55131506713554	-0.889176371962038	0.305604457831638	1
Merged-chr2-5793985-4	chr2	5793476	5794476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356501)	TTS (NM_001356501)	-51058.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	6.24126791880984	6.10763256708899	5.957445231609	5.50814861225083	5.84998126617057	5.36826297687593	-0.890063498788838	0.00819912644546004	0.0875667967236348
Merged-chr12-32964004-1	chr12	32963504	32964504	+	641.0	f0_balb.idr	intron (NM_198710, intron 1 of 4)	intron (NM_198710, intron 1 of 4)	9818.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	4.08275547722999	3.80556538928579	3.71701447336998	3.44692057847621	3.61220925412912	3.68084964131267	-1.00883051794133	0.0735848395249663	0.356476905402503
Merged-chr6-140766544-4	chr6	140766029	140767029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139644.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.58348477029206	6.78862283599662	6.45042015587737	6.80478945834444	7.34967622781429	6.72502322251462	0.592651960847525	0.0499152451680168	0.284378481337921
Merged-chr6-89580042-3	chr6	89579539	89580539	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	15613.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	3.19779581855014	3.35704566914372	3.42660030782344	3.64866564401036	3.09270069597813	3.75191871657631	0.727876338120786	0.271843757040384	0.669225282595312
Merged-chr9-99390675-3	chr9	99390112	99391112	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008624, intron 4 of 5)	intron (NM_008624, intron 4 of 5)	-32082.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.43756030458893	3.65589580052824	3.47632101346519	3.51569370766005	3.28493632853976	3.49241591564682	-0.372022774756769	0.529448131809829	0.850904712036958
Merged-chr7-142394439-4	chr7	142393912	142394912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6542.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.26381580047449	7.15845600168075	7.14673219085903	7.18353221966936	7.33838404775182	7.31040991710698	0.130607952591767	0.57486522309162	0.870933059302421
Merged-chr1-136679866-1	chr1	136679366	136680366	+	601.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-3530.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	3.0345651063802	2.95290706322108	2.98685946884445	3.12393442928057	2.71841222406394	3.2315982105714	0.21286791695488	0.768229788854741	0.942864224975033
Merged-chr10-41811199-2	chr10	41810699	41811699	+	919.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001162908, exon 1 of 10)	exon (NM_001162908, exon 1 of 10)	625.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.73240956611585	5.12080306404121	4.74000408179533	5.0618616321865	4.92722763818664	4.80716561918939	0.115576942704675	0.775437814025311	0.944666768607333
Merged-chr16-58513990-2	chr16	58513490	58514490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	9436.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.77929150208016	5.0480942092318	4.80250403949486	4.30774495776782	4.19341300979928	4.97145142322211	-0.840214197533442	0.0811607260413508	0.3769169890299
Merged-chr11-119711003-4	chr11	119710510	119711510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	108105.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	4.23836466420782	3.90496678371207	4.00195187343971	4.23441389637666	3.88050601255208	4.0220376147936	-0.021410009433591	0.966609148120167	0.992349609766636
Merged-chr8-91082153-4	chr8	91081688	91082688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12131.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	5.94407525398044	6.0903660381505	6.27891210959537	5.39453336653262	5.11017040720717	5.61223016010224	-1.34740445835576	7.59303169008381e-05	0.0022490232631328
Merged-chr2-160210725-4	chr2	160210236	160211236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116758.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	7.80092970091932	7.88157390185734	7.827575584762	7.75413393762555	7.85881231385996	7.34612015786918	-0.223168611820422	0.361746011714863	0.747458707295016
Merged-chr1-138124216-3	chr1	138123710	138124710	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	50916.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.50296488294291	4.62589002527457	4.54682228289352	4.51573401744443	4.49298741311241	4.84052264681774	0.131044027463207	0.758765510557559	0.940287421764314
Merged-chr11-116844438-2	chr11	116843938	116844938	+	665.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	923.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	5.68779187129348	5.69347503856547	5.93769374768176	5.85833205543657	6.03521859266856	6.14868462220809	0.437640640251529	0.155294903270147	0.524873107662021
Merged-chr8-109694079-4	chr8	109693593	109694593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-799.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	7.78315412683091	7.89054636426133	7.63468406230656	7.65833557293937	7.8770052527652	7.86471998809863	0.0364681898737946	0.872046840841458	0.970261003150518
Merged-chr13-24806283-3	chr13	24805781	24806781	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	4624.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	6.13192485611674	5.95627547431291	5.7844035963723	6.68968699801099	6.81249918536042	6.00920825041121	0.975034235337275	0.00411196377926191	0.0530215840918682
Merged-chr1-162388727-4	chr1	162388228	162389228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 2 of 20)	intron (NM_001038619, intron 2 of 20)	89306.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	3.75301506183419	4.21085042191245	3.90494858684037	4.16015525961309	3.88008026900732	3.97472428361129	0.095596479608985	0.857280324852324	0.966735539271044
Merged-chr7-35735455-3	chr7	35734952	35735952	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	19002.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	6.05312930417977	6.25820305878115	6.19686845579895	4.12516801659662	3.99745176348305	4.31186494873929	-5.10200302290758	1.33537892723241e-21	1.15743968517869e-18
Merged-chr11-106662082-2	chr11	106661582	106662582	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-49152.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.49228894783704	4.74622197428754	5.04745002010362	4.58350464075443	4.79509921977632	5.20109529228849	0.233769844427073	0.602752797693632	0.882397657327329
Merged-chr14-64186018-4	chr14	64185531	64186531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	AmnSINE1|SINE|Deu	81708.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	5.76058771990579	5.66503072148685	5.49447626529582	5.41237808602206	5.37133730559609	5.04998897958804	-0.673227785524162	0.0537662944480161	0.297320783440588
Merged-chr3-65960168-2	chr3	65959668	65960668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1919.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.91446234553976	3.13965050316509	3.07061383407112	3.16198209817292	3.11755445465228	3.25740251446307	0.576924768287213	0.37970087751381	0.762033755102441
Merged-chr1-152602036-2	chr1	152601536	152602536	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	23181.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.95926213871812	5.79557106799041	5.68532842261887	5.91939234002833	5.8720528592664	6.12647788788777	0.25476654978894	0.409301765541998	0.782658446423422
Merged-chr16-8832414-2	chr16	8831914	8832914	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	B1_Mus2|SINE|Alu	2314.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.1948948688407	3.30269133873011	3.36327190058401	3.3185436501714	3.13432652304139	3.26705305437476	-0.193832987091972	0.754836554016354	0.939123558849015
Merged-chr11-114866370-2	chr11	114865870	114866870	+	913.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110338, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	14340.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.04524562736097	3.61149869657217	3.89998354990167	4.08135944536421	4.08718653128529	3.70075386704198	0.335640826431526	0.544918819178277	0.857897621777531
Merged-chr5-72291681-3	chr5	72291188	72292188	+	899.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 21 of 22)	intron (NR_003966, intron 21 of 22)	88345.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.14938910681337	4.23747062052133	4.08800518809457	3.98717319821007	4.13125918000136	4.00946148087228	-0.327315617048532	0.495958132864814	0.832832522439819
Merged-chr17-50678101-2	chr17	50677601	50678601	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-20580.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	2.78046514104191	2.67147684253721	2.74396207459721	2.66165228129019	2.30653459427286	2.69422263618324	-0.961282391198549	0.252635199910685	1
Merged-chr4-115640246-2	chr4	115639745	115640745	+	642.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 4 of 11)	(CTGGGG)n|Simple_repeat|Simple_repeat	7460.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	5.02018715434869	5.15813149972459	5.32047429088109	5.70090034704714	6.19262546153058	5.85455288007943	1.47129742793449	2.50430842268749e-05	0.000885210260131608
Merged-chr11-61794969-4	chr11	61794473	61795473	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-32885.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	5.90171284000859	5.84183824789778	5.82340666125146	5.66707298537314	5.79615797089725	5.78411887420522	-0.191573395791263	0.526684088186545	0.849588616595119
Merged-chr19-11559811-4	chr19	11559284	11560284	+	971.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22935.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	3.93692113273865	4.00184766324955	4.55554983342255	4.45035029367493	4.31150594807457	4.50585342969502	0.637122335169702	0.204311113794603	0.594853534295158
Merged-chr13-67553074-4	chr13	67552530	67553530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131100)	promoter-TSS (NR_131100)	122.0	NM_001035231	212276.0	Mm.422831	NM_183145	ENSMUSG00000095432	Zfp748	KRAB-O|Rslcan20/21|Zfp208|mszf54	zinc finger protein 748	protein-coding	6.50023238643225	6.7487558970363	6.69462325999968	6.8113544135414	6.52266177125516	6.64021204953794	0.0154732171792202	0.954018849995131	0.989495550016789
Merged-chr17-74456958-2	chr17	74456458	74457458	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	ORR1A2|LTR|ERVL-MaLR	2150.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.71727885313258	4.94181472917319	5.08077449716018	4.8407072872946	4.70259562726995	4.94343359839145	-0.200883695642782	0.614124996955548	0.887411760755953
Merged-chr4-9110538-4	chr4	9110024	9111024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-158769.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.9131259908654	3.92937731977943	3.82690509466677	4.1085883091224	3.89522867142584	3.99862334778308	0.324345569615219	0.518847902338686	0.845497711286192
Merged-chr2-74825889-4	chr2	74825411	74826411	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016804)	promoter-TSS (NM_016804)	99.0	NM_016804	53375.0	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	5.7029484021435	5.7318502001242	5.49598405109502	5.69176351618729	5.43668704116741	5.72536830384074	-0.0758812668673658	0.81735142682708	0.956767881392089
Merged-chr14-73473797-4	chr14	73473285	73474285	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-36264.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	4.42426957869002	4.53576185834439	4.52255329361693	4.48331988848203	4.35726757202476	4.58877421044342	-0.056829490566055	0.894717662719434	0.975576532925631
Merged-chr5-99411082-2	chr5	99410582	99411582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	L1_Mur3|LINE|L1	-158155.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.88763144001546	3.90725152558796	4.15607575993344	4.07869394340127	3.96667414915882	3.66987284705916	-0.179310906846473	0.735577348623088	0.932744628746236
Merged-chr17-46893257-4	chr17	46892753	46893753	+	879.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178385)	TTS (NM_178385)	2632.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	5.68027413030993	5.53798391234025	4.96940828653034	5.2759186919728	5.14501166517883	4.73565139568453	-0.719535533721624	0.0895578347310879	0.397648255725953
Merged-chr18-12976131-2	chr18	12975631	12976631	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357396, intron 3 of 10)	B2_Mm2|SINE|B2	1671.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	3.00579709461345	3.40895678529586	3.40760422760284	3.2219277210711	2.99957401810395	3.08227847090742	-0.771535692317277	0.254176537278735	0.651179145391095
Merged-chr7-102268555-2	chr7	102268055	102269055	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	731.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	4.06984455438492	4.06412044239111	3.69764722806113	3.79096447648612	4.04494095308147	3.82390724126832	-0.199635326958268	0.711136828771819	0.924566769506961
Merged-chr18-32369985-4	chr18	32369502	32370502	+	861.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-7215.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	3.19478829289444	3.19300746585734	3.12947031575649	3.2172952418335	3.1012297836254	3.25930110562987	0.0638915017903212	0.919390927166152	0.982034101943453
Merged-chr5-90689946-4	chr5	90689449	90690449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49422.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.78395344781099	5.68122755860283	5.60315222651036	4.91122274903995	4.60759682226506	4.66808836510507	-1.99552524996305	8.85637894126027e-08	6.40801372995117e-06
Merged-chr10-20036874-7	chr10	20036371	20037371	+	880.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	102345.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.60587626541687	6.68121424665317	6.39705262249809	5.97556154817563	6.02431301355111	5.79899716816283	-1.04629058661854	0.000285198099186147	0.00667719849101882
Merged-chr4-11008587-3	chr4	11008085	11009085	+	832.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-966.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	6.83055409827459	7.44205370674405	6.97411436824579	6.93251922544148	7.30976431193364	6.77597525470145	-0.120898521230392	0.692063343724677	0.918541547639936
Merged-chr17-57249442-4	chr17	57248927	57249927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-24.0	NM_001242391	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	5.38325109581262	5.08183279731903	5.62759176482035	5.29812145603744	5.04512574273731	5.17206865628853	-0.401640214388856	0.287092179145995	0.684323804399215
Merged-chr2-178414477-4	chr2	178414064	178415064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085501)	promoter-TSS (NM_001085501)	30.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	4.93670113542831	4.95686117572615	5.45018529177382	4.82322866945207	4.75725405107723	4.97312172321294	-0.597040313364012	0.140976472356094	0.501640878883247
Merged-chr2-164917052-4	chr2	164916548	164917548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5298.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.51303521998389	3.39800477543754	3.85314294575962	3.66702533713434	3.74896870288362	3.33303389480689	0.0193266230471004	0.974992050655884	0.994418776221458
Merged-chr16-90285359-4	chr16	90284839	90285839	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-836.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.92962581459223	6.20174147589187	6.04144665970349	6.00743744349532	6.42933508107899	6.40304903708209	0.39140508707589	0.200663833911435	0.589889994421576
Merged-chr6-114930076-2	chr6	114929576	114930576	+	958.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	-8255.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.19033008555719	3.02087442400116	3.23977920200801	3.29026292230784	3.11971765280386	3.19718655060122	0.224314290649071	0.726094201494079	0.929743505822386
Merged-chr7-35047355-2	chr7	35046855	35047855	+	878.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009884, exon 2 of 2)	3' UTR (NM_009884, exon 2 of 2)	9211.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.86145052835649	3.55826487835795	4.21320514298228	3.61957042696001	3.6071043345596	3.88898949472296	-0.610945517146651	0.293821129505361	0.690424156263798
Merged-chr7-19272921-3	chr7	19272408	19273408	+	912.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1054.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	6.05410453915831	5.55377391235989	6.2425652035172	6.29737577328422	6.20665383251838	6.26361824115924	0.482612041128286	0.141568307575399	0.502257195591213
Merged-chr2-91136730-3	chr2	91136233	91137233	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177720)	TTS (NM_001177720)	18589.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	2.96883763553127	2.92635514658956	3.3226965506131	3.3045693307405	3.04306897899689	3.28572903579005	0.585003611138618	0.389044776045097	0.768867573000832
Merged-chr17-79954720-2	chr17	79954220	79955220	+	826.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58597.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	3.22674508271118	3.47897279066987	3.4158730648408	3.6420479680224	3.63601124701256	3.89557243176281	1.24671314334148	0.0351305554198096	0.23002585576427
Merged-chr19-11329648-4	chr19	11329166	11330166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 2 of 6)	L1MA4|LINE|L1	5029.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	6.53717446038586	6.26884706566964	6.24866472476619	6.42761986468049	6.4286184813467	6.1584453071344	-0.0182536077570055	0.949263219583166	0.988169196639905
Merged-chr18-68031076-3	chr18	68030583	68031583	+	832.716675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	MTD|LTR|ERVL-MaLR	97910.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.04081197143621	3.08326247089951	3.07368455077854	2.72481131510927	2.57428429994174	2.91135171345282	-1.74979099610714	0.0212830538913966	0.168226498356163
Merged-chr17-27817419-2	chr17	27816919	27817919	+	837.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	3123.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	5.04804081942838	4.80861366814934	4.83710278717931	4.89679381322564	5.03291372269074	4.94025758333435	0.121923481677918	0.750453294323162	0.937550343416037
Merged-chr9-50532153-4	chr9	50531647	50532647	+	794.012512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133217)	TTS (NM_133217)	-3506.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	3.80128046940785	3.72923143986036	3.58717109720047	3.83616359443915	3.55266805643684	4.1453278071345	0.466768057140693	0.416120070584236	0.78703200622012
Merged-chr10-17178073-2	chr10	17177561	17178561	+	831.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-82279.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.49513480521026	4.22332316524384	4.1606623936589	4.19514807756686	4.08043006695353	4.27237138416696	0.510579429006611	0.376519339855426	0.759284451214457
Merged-chr5-105730733-3	chr5	105730217	105731217	+	852.322205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	MIRb|SINE|MIR	29907.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.66949634809166	4.26087578786125	4.19446244113808	4.36897073590069	4.08356503934009	3.95259604374072	-0.665549001022235	0.188446592350676	0.574088195819019
Merged-chr11-58282726-4	chr11	58282227	58283227	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24342.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	2.43717104818787	2.74128007878919	2.68068185602163	2.23635236203888	2.47721209533933	2.43992498082688	-1.44394481023044	0.10209928209777	1
Merged-chr2-45087181-2	chr2	45086681	45087681	+	938.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	23096.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.98778000748604	7.03158437391008	6.68183178542443	6.87379776320155	7.07425572056396	7.06463986427735	0.135063081990296	0.60103809891892	0.881855262262798
Merged-chr12-100201473-2	chr12	100200973	100201973	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 1 of 5)	intron (NM_001313934, intron 1 of 5)	1329.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	6.73839865988623	7.13746324976375	6.86734090106141	7.03759589137068	7.14499896551942	6.98279623238605	0.199620056724649	0.442684587945317	0.803309923833629
Merged-chr7-132304649-3	chr7	132304203	132305203	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-10961.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	5.25857342551443	5.1881296773952	5.42868281178168	5.10577120348667	5.18202609011311	5.2202324314754	-0.241388420803962	0.493121859940384	0.831208279358962
Merged-chr16-57545954-4	chr16	57545384	57546384	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-3358.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.21593266927764	6.21421917687055	6.43654666918626	6.10331504890778	6.38106913185019	6.20913339186846	-0.0707965348508446	0.804946586731175	0.953697404102693
Merged-chr19-5815259-4	chr19	5814738	5815738	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12566.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.0018174466146	6.97053046790285	6.82309884932129	6.53513832657829	6.33507201306073	6.63100416320908	-0.696576769591969	0.00764055121112828	0.0832885278864512
Merged-chr9-123957022-4	chr9	123956512	123957512	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11680.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.0513441325124	3.97420747855484	4.37788102546223	4.11236253895618	3.86124178006649	4.14803377266081	-0.279445109815606	0.581285590762256	0.873266496400704
Merged-chr2-26498881-4	chr2	26498417	26499417	+	847.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4905.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	6.95230842962419	7.25611036805515	6.91630991407346	7.08247494483406	7.30157662072637	7.18678863522196	0.208523914493796	0.412308491044341	0.784428320958084
Merged-chr1-125433285-3	chr1	125432811	125433811	+	946.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	2416.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.81262026753685	6.81411227431252	6.7065532091441	7.50198711366686	7.6994706852271	7.1221084759476	1.04043649512402	9.27196561600123e-05	0.0026621867321471
Merged-chr11-118161869-2	chr11	118161369	118162369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32650.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.22838201362618	3.46977021477789	3.54550427249201	3.22077541422495	3.026548039205	3.66372147594224	-0.357063383478043	0.596652370085129	0.880020560968805
Merged-chr7-41633894-1	chr7	41633394	41634394	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360684)	promoter-TSS (NM_001360684)	363.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	6.55860503976585	6.79208139040945	6.69443457905537	6.88316653818206	6.84500455566237	6.62016778901541	0.170309778049755	0.514778519210221	0.843210843733192
Merged-chr10-86685505-4	chr10	86685007	86686007	+	971.65625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015572)	promoter-TSS (NR_015572)	-20.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	5.7849203567678	5.96643732227916	5.5965990312996	6.36777735293912	6.16103320140076	5.85759027626909	0.609149376783225	0.0612196938286402	0.320806906674939
Merged-chr5-93206483-4	chr5	93205998	93206998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	-3.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	7.7438577577955	7.87508726847747	7.5597231430376	7.81543106605213	7.83019522171958	7.56632672275202	0.0141448119773608	0.951795590849991	0.988958496187269
Merged-chr7-121269502-4	chr7	121268992	121269992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122804.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.27370557033338	5.06161927212178	5.55380942423818	4.82534453701975	5.05212985542835	5.80184489690282	-0.0335342417227209	0.940477758973653	0.98684811092327
Merged-chr4-127061139-4	chr4	127060662	127061662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356311)	promoter-TSS (NM_001356311)	-8.0	NM_001356311	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	4.88740283427587	4.80458409753655	5.03062460732156	5.07012714482768	5.00118052812565	4.91753606921717	0.21324085758653	0.571998306674026	0.869773807126863
Merged-chr2-167765355-4	chr2	167764858	167765858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74181.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.61425867960911	7.95520206370931	7.23226039807965	7.76157324731454	7.86415720633159	7.28982252221942	0.0375843835389337	0.899187092453259	0.976510508522132
Merged-chr18-61229841-3	chr18	61229335	61230335	+	970.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	9336.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	3.34531271797161	3.45344506097514	3.68254838615464	4.31714427525877	3.74202595596767	3.52670297073733	1.36475040867287	0.0283396273752864	0.201502136757209
Merged-chr5-135466859-2	chr5	135466359	135467359	+	921.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B3|SINE|B2	-72313.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.57819046106449	6.56955468101678	6.83986158823812	6.38878780931221	6.35814562325602	6.54520393448784	-0.375282119730359	0.16456015164573	0.539168416212707
Merged-chr17-25678158-4	chr17	25677744	25678744	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38928.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	6.43117490355179	6.54406608353322	6.34538061420214	6.68253260780522	6.89721058833572	6.2586255675891	0.331359248847167	0.266970805925407	0.6644961657027
Merged-chr3-9407187-4	chr3	9406730	9407730	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015499, intron 1 of 1)	intron (NR_015499, intron 1 of 1)	4152.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	3.6064625421041	3.71782981777403	3.60680148877788	3.44389008399354	3.94019410921913	4.02193692449829	0.584542028547451	0.315321959723826	0.709692649130764
Merged-chr8-83971903-2	chr8	83971400	83972400	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-1078.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	3.82732538388856	3.78205504029808	4.07647196666152	3.94861390587031	3.80255706098973	3.91004834153585	-0.0232341917368534	0.964147981947878	0.991353521860134
Merged-chr11-102156346-4	chr11	102155835	102156835	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029649)	promoter-TSS (NM_029649)	72.0	NM_029649	76547.0	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	5.02913752112006	5.11929404502884	5.47978620341889	4.87874036655463	4.70745472877982	5.00432274993807	-0.757522565328104	0.0548314465367607	0.30085703788699
Merged-chr10-9900618-3	chr10	9900127	9901127	+	740.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081344, exon 1 of 26)	exon (NM_001081344, exon 1 of 26)	413.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.64727796459829	5.22870854812166	5.20979870807099	5.50760353023517	4.5592973316409	5.10257072483427	-0.530002678622797	0.2412928510698	0.638385260200477
Merged-chr18-4375400-4	chr18	4374753	4375753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361009)	promoter-TSS (NM_001361009)	-339.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	7.05738407294141	7.18319112574125	6.76882349542194	7.10644473348844	7.20316260157614	6.97876480937133	0.121282665905644	0.638809802976878	0.897797248308421
Merged-chr19-34196778-4	chr19	34196271	34197271	+	901.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	3837.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.69808599261268	5.03409498001199	4.92277373283548	4.97836797229836	5.02094514571484	5.02327720501203	0.249276589178793	0.517185756022782	0.844527100635531
Merged-chr1-57393077-3	chr1	57392586	57393586	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13462.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	5.03923144516584	5.24378318814918	5.34975573930344	5.08939757145042	5.29658017989524	5.74927891128471	0.368972964454339	0.340736621313789	0.730420774584649
Merged-chr9-70007154-3	chr9	70006653	70007653	+	767.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-5395.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	4.71467801078148	5.12052326544398	4.85337728686994	4.95959525720941	4.60630783032643	4.72399408926664	-0.32065983277289	0.441239698062534	0.802453889283485
Merged-chr8-13617401-2	chr8	13616901	13617901	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	-54940.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	2.74170386983667	2.5037723351108	2.88162813657734	2.63865384298214	2.61125255949884	2.65347863009191	-0.435710771145957	0.572025732884906	1
Merged-chr8-104116635-4	chr8	104116117	104117117	+	979.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	intron (NM_009868, intron 2 of 11)	-10744.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	5.79734176777429	5.64251569767601	6.09771612146592	6.08778026131283	6.04766841258373	6.07317531887489	0.390131393540656	0.20727671703035	0.598045038818104
Merged-chr16-45736913-3	chr16	45736414	45737414	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001272070, exon 4 of 6)	exon (NM_001272070, exon 4 of 6)	6041.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	2.35623280750725	2.4441499446865	2.61862033424242	2.11124841809922	2.24658258708262	2.38481734267148	-1.52191081318255	0.0928172250990723	1
Merged-chr15-99121582-2	chr15	99121082	99122082	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-5263.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	6.05863407207183	5.93402229948569	5.8093257894655	5.07307031746089	5.04912371409933	5.23872660406623	-1.58935288182238	1.81913115413319e-06	9.1392327573768e-05
Merged-chr3-138118233-2	chr3	138117732	138118732	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355052, intron 8 of 21)	intron (NM_001355052, intron 8 of 21)	13421.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	7.08823365289175	7.29288746148364	6.81424113489359	6.44661722999635	6.58306526340338	6.38073855554691	-0.949398829217376	0.000545191374590674	0.0112370873568846
Merged-chr4-33033037-3	chr4	33032526	33033526	+	751.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355494, intron 1 of 6)	intron (NM_001355494, intron 1 of 6)	1646.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	2.91697343291214	2.81039926737551	3.02134926549516	3.05766838003614	3.08337537415627	2.97421457732577	0.601997092507766	0.376105188675315	0.758996908694596
Merged-chr11-53309052-1	chr11	53308552	53309552	+	790.0	f0_balb.idr	Intergenic	Intergenic	-8573.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	4.88601348440492	5.01106254644575	4.75369733385532	4.78010754623524	4.7236883121908	4.9679676273182	-0.171729602653623	0.662962406919681	0.90692994613967
Merged-chr9-89228313-4	chr9	89227801	89228801	+	954.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	L1MB2|LINE|L1	16917.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.82147575755429	5.7847896385552	5.60548161340344	5.81767008827133	5.81317678444472	5.5509668709656	-0.00981187480993303	0.975372864915052	0.994454548709104
Merged-chr15-101982843-2	chr15	101982344	101983344	+	671.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21498.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	4.12333415825541	4.04463640512532	4.48838270605631	4.11283158160263	4.0141866136807	4.69728711626096	0.201271860280617	0.703370390553937	0.922108924938678
Merged-chr16-36656154-4	chr16	36655648	36656648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	9929.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.51487284495287	6.33769245564846	6.22466485922605	6.42483238707462	6.41519561275465	6.10768304422341	-0.0611402241747086	0.831552861555714	0.960464332375456
Merged-chr12-108767052-2	chr12	108766552	108767552	+	718.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26259.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	5.02541076424671	4.96865500485973	5.50322225309517	4.97785595149403	5.05169017232828	5.22743576892695	-0.186558911632079	0.634700723729978	0.896354115104213
Merged-chr10-125213995-4	chr10	125213483	125214483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94833.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.49322305465785	3.54561817157145	3.50177617549257	3.4123187913545	3.28501495522177	3.40733405980006	-0.568377809259685	0.330746314334651	0.722177477777833
Merged-chr17-33940516-6	chr17	33940052	33941052	+	988.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	-171.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	6.6120371200482	6.61071854575664	6.64177280690821	6.58836130628751	6.78885395357027	6.83857660436493	0.191142487078096	0.456743892080934	0.811822155193116
Merged-chr5-150840309-4	chr5	150839793	150840793	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112314.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	5.28242493076617	5.54283495529649	5.52088420880286	5.50192673941859	5.87737984793878	5.66624026205614	0.463254763048943	0.172296503246117	0.550850973722543
Merged-chr15-79346690-3	chr15	79346219	79347219	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304830)	promoter-TSS (NM_001304830)	98.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	4.95928576441737	4.56939786730845	4.09284631282991	4.42548733605541	4.32319567319588	4.54920329522795	-0.407550681015384	0.418256205552107	0.788588731807313
Merged-chr2-168207453-4	chr2	168206957	168207957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009628)	promoter-TSS (NM_009628)	-345.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	8.45937976846955	8.53922642408482	8.19528008996968	8.56525672608493	8.44354663192337	8.30299024388716	0.0453313054980392	0.838024900177797	0.962329228456999
Merged-chr15-94543646-4	chr15	94543146	94544146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029926)	promoter-TSS (NM_029926)	-14.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	7.56427356860469	7.38177750220864	7.6306943778134	7.68471903848521	7.65990187504997	7.7052429423234	0.228223785724787	0.308662619720646	0.704633851730239
Merged-chr16-35985625-2	chr16	35985125	35986125	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	B3|SINE|B2	2262.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	3.11911577349915	3.04017062675638	3.20500541974611	3.45253704454315	3.18574557058319	3.21917527683469	0.722999803625765	0.258342360795375	0.655850352607444
Merged-chr1-181016691-4	chr1	181016203	181017203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	866.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	8.1349228257042	7.86275332083887	7.71227212628965	7.83008614528997	8.31075910061759	7.61531976992483	0.0618948201748421	0.824405009330936	0.958579329481158
Merged-chr8-115652057-2	chr8	115651557	115652557	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54837.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.72108873135159	4.60380236215241	4.87214796523298	4.08880001556047	4.00891529981602	4.80115203945014	-0.973517845165118	0.0570246030424279	0.307950621102956
Merged-chr1-125476445-3	chr1	125475980	125476980	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40753.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	2.98038486016749	2.83644752351388	3.03192356571179	3.16672180645881	3.03598149904459	3.32829318786746	1.03210283843939	0.127311196573428	0.476961280706071
Merged-chr12-44276168-3	chr12	44275642	44276642	+	760.209534	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	L1MA4|LINE|L1	6988.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	3.67414807504732	3.7779708639392	3.89154687212855	4.36496150462699	4.01417489425551	4.06113897963844	1.14347352153162	0.0268301524890045	0.195061889760165
Merged-chr3-59120134-4	chr3	59119627	59120627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	10635.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	5.54566902710442	5.53737597528689	5.65281728162522	5.35184892098418	5.4961432448561	5.16861221073441	-0.415736481967606	0.222127176432215	0.617058661789196
Merged-chr15-86186805-3	chr15	86186320	86187320	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145475)	promoter-TSS (NM_145475)	-679.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	5.64172624578187	6.06525299126191	6.02026241148365	5.31087250952979	5.35579487139958	5.81168934701177	-0.771252075315895	0.029519637975346	0.206665821935939
Merged-chr4-132565451-2	chr4	132564951	132565951	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	1384.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.86053920834584	3.63775838299338	3.52468077981113	3.48476163317523	3.24874830518287	3.48409902136881	-1.03633210184411	0.0822809060683126	0.379303580727543
Merged-chr14-25769166-4	chr14	25768662	25769662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101433)	promoter-TSS (NM_001101433)	-306.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.59879977533482	4.43313299326893	4.80275904542961	4.61263965258343	4.32451553429851	4.34502785856564	-0.440237631068624	0.323133029186856	0.716523928970614
Merged-chr4-24585072-4	chr4	24584575	24585575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 17 of 24)	intron (NR_149739, intron 17 of 24)	88624.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	4.68099242900655	5.01387709881048	4.69569547273607	4.51383180710926	4.57796937738323	4.31980106511317	-0.780630597316108	0.0722899149223966	0.353157446871531
Merged-chr5-36720915-4	chr5	36720407	36721407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24886.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	6.55283894446709	6.8050867221066	6.45028139325072	6.46653264099666	6.77612768717739	6.50998137598995	-0.0308119631024901	0.912718854004173	0.980422793162831
Merged-chr16-55813234-3	chr16	55812730	55813730	+	578.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 12 of 12)	intron (NM_001159395, intron 12 of 12)	8908.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.65082943032278	3.58206017347363	4.05043669032096	3.44194702068988	3.28802625939136	3.98958452078834	-0.560569400679305	0.381207772433814	0.763039122652701
Merged-chr18-4336440-7	chr18	4335957	4336957	+	989.5064699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	16496.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.50281552621841	6.64870456281427	6.54914268596444	6.83842765048381	6.89237166344525	6.78832651687367	0.429882748536554	0.0886189321307525	0.395166350736101
Merged-chr16-55691225-4	chr16	55690708	55691708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGCC)n|Simple_repeat|Simple_repeat	130930.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.5114082735563	3.37144928082711	3.62228772781373	3.34922557536216	3.45905994026026	3.48394705932134	-0.257165876825414	0.660562739649029	0.905981809862142
Merged-chr2-113433984-4	chr2	113433485	113434485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010230, intron 3 of 19)	MTD|LTR|ERVL-MaLR	-7079.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.50160825398412	4.25027104039934	4.20416376821195	4.19744906208172	4.28069966435408	4.17730241566704	-0.290142862949193	0.53238131181361	0.851971173271146
Merged-chr7-19747496-4	chr7	19746981	19747981	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2092.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	3.93930537755427	3.52921946789037	3.7744232261915	4.06429893252489	3.81140786291549	4.13359900376117	0.761145595599052	0.16514468521019	0.539893091582959
Merged-chr8-117233424-4	chr8	117232929	117233929	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23590.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.08938253303503	2.7515867916883	3.07409029386512	3.10901410928136	3.01978889172361	3.20299296712737	0.590965120253215	0.395924612304667	0.773231268695054
Merged-chr10-58445194-2	chr10	58444694	58445694	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1658.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	6.41267098628978	6.57657737415231	6.3003421118479	6.21805477510109	6.30749206995053	6.41793968946151	-0.211624605412813	0.444352257065814	0.804158035358769
Merged-chr2-22743690-2	chr2	22743190	22744190	+	947.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAG)n|Simple_repeat|Simple_repeat	-30637.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.85472420391514	4.81980197770857	4.96020459223037	4.87589014950543	4.76906171432818	5.05817929486118	0.0476936508551365	0.902011485357784	0.977392189525306
Merged-chr1-95598867-3	chr1	95598361	95599361	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	68733.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.67988359598155	4.60252821098237	4.75161045417732	4.56150933017272	4.76714985035531	4.62089050789479	-0.0372551926177689	0.927481068732576	0.983584626679457
Merged-chr4-95905455-4	chr4	95904945	95905945	+	896.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	61590.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	2.4870794748883	2.82578715808405	2.60488497428674	2.71032391336979	2.78418752062171	2.80520789273489	0.615296026478216	0.427702472934511	1
Merged-chr1-23435169-1	chr1	23434669	23435669	+	572.0	f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-51994.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.37867040720031	4.87320189723555	4.59399165524638	4.7333532569556	4.46708236187014	4.53482943024587	-0.130783003363048	0.769223471835652	0.943088740562576
Merged-chr5-121660567-4	chr5	121660128	121661128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	65.0	NM_001289543	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	7.62028888219321	7.50037642402204	7.03277200574875	7.54126735709728	7.35488957670851	7.09088935594835	-0.104137107819799	0.708777719099494	0.92375127577894
Merged-chr16-45038810-3	chr16	45038319	45039319	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55192.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	4.15481976332665	3.99163161819532	4.07133319534875	3.76929090383305	3.68665698637023	3.99921036157003	-0.802690858386002	0.118956424811404	0.461021248053436
Merged-chr19-24989088-4	chr19	24988590	24989590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.80551980357425	5.61728816554619	5.76681031484025	6.03438009769495	6.10622851971968	6.04437906276277	0.590411246002435	0.0475003008448783	0.276102342486946
Merged-chr7-80025924-3	chr7	80025438	80026438	+	740.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175433)	promoter-TSS (NM_175433)	-290.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.80616556846872	6.83862593263874	7.04754216516386	7.06835906154566	7.20639340224519	7.20320774736912	0.405897496806819	0.0970110954178144	0.415316897896969
Merged-chr1-180847733-2	chr1	180847233	180848233	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3418.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	6.29743160993397	6.54271118430204	6.2679271519094	6.27871713896257	6.32699800156064	6.06523293660095	-0.237988903524853	0.406927916257131	0.781142268902047
Merged-chr2-90563996-1	chr2	90563496	90564496	+	640.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	16651.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.04362230463083	4.16192553667765	4.71671575159333	4.91098494203862	4.43331607938323	4.98518472116447	1.12457256456393	0.0252902721411934	0.188325842520532
Merged-chr16-94237497-2	chr16	94236997	94237997	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	52794.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.80285603856761	3.68615224548253	3.60352263181616	3.59876415789138	3.49469341989886	3.67399758849153	-0.41479805219543	0.453888221102951	0.809979841654596
Merged-chr9-41069119-2	chr9	41068620	41069620	+	885.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	10386.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.88341887155654	3.76400461689884	3.84268014958727	3.67981613826482	3.56843227000451	3.81259353876265	-0.489718780037064	0.359957762397491	0.746219593510366
Merged-chr1-170903562-4	chr1	170903072	170904072	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	9369.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	5.74277548324267	5.63032768939176	5.74916195094022	5.35505127760103	5.54676898324889	5.29224189590798	-0.550190972921539	0.0962196666179011	0.413503048235839
Merged-chr7-101899603-2	chr7	101899103	101900103	+	905.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027532)	TTS (NM_027532)	3272.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	5.82412425886794	5.61333910262387	6.05680588405218	5.95803210971855	6.02343128163082	6.00818011991217	0.291887138423649	0.34826374825967	0.736107144694558
Merged-chr1-156014952-3	chr1	156014463	156015463	+	733.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	19854.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	5.74268116278339	5.69827442309191	5.71995321235048	6.09467928935618	6.16666012504514	5.69972637534945	0.524309209775572	0.0978213945004472	0.417064164942457
Merged-chr3-116186616-4	chr3	116186119	116187119	+	730.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56931.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.16036861211937	4.10934506186123	3.73719559196717	4.04689636137074	3.63543121306151	3.69573061458807	-0.663851992821197	0.235266901099864	0.631523149768409
Merged-chr8-126667056-4	chr8	126666562	126667562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73626.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.3720421472707	6.34308455335342	6.45565917473842	6.08882439169669	6.00939417266114	6.08090715986011	-0.554363237644959	0.0446312897312989	0.266336071472354
Merged-chr11-120034466-2	chr11	120033966	120034966	+	882.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	7315.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	4.44629344776184	4.03223914120738	4.5304638437563	4.40001720565957	4.02552327733946	4.11836157018837	-0.424941164262727	0.397076836824013	0.773969159231945
Merged-chr6-26205298-2	chr6	26204798	26205798	+	715.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	273872.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.96556743297069	4.89329114567722	5.05867601883179	4.82984400636353	4.82405120647235	5.08936193781767	-0.129325399914469	0.735502121441896	0.932744628746236
Merged-chr3-41580072-4	chr3	41579574	41580574	+	937.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	15194.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.36677677550734	4.26028336727201	4.32798908056456	4.2510516486648	4.10253724673974	4.21570326511714	-0.35836355904454	0.432410312265829	0.797340659568202
Merged-chr18-35093586-2	chr18	35093086	35094086	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-25326.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	3.76609376510678	3.82950177708349	3.84393199250748	3.79056845176558	3.57028659782107	3.76199003368615	-0.354022324115812	0.506828603729973	0.838597859957521
Merged-chr5-99965640-4	chr5	99965159	99966159	+	746.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077265, intron 4 of 8)	intron (NM_001077265, intron 4 of 8)	13279.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	3.40100301370095	3.09418060706472	3.49786420457404	3.37685409949724	3.00768791671489	3.05697189006807	-0.739184820844099	0.277134322966685	0.674361536640208
Merged-chr8-70548695-2	chr8	70548165	70549165	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	8990.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.30515311987887	4.42767693292091	4.25842095254325	3.60191200631434	3.44823072017167	3.73759039557575	-2.45518729989952	8.46279890161359e-06	0.000346200870700818
Merged-chr7-143696404-3	chr7	143695914	143696914	+	722.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199227, intron 14 of 21)	B3|SINE|B2	-10539.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	2.18551218951517	2.2621881955787	2.31398111806379	2.36705433254778	2.15921769714736	2.45246417168211	0.497221732785923	0.563238438384574	1
Merged-chr7-101910296-2	chr7	101909796	101910796	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 3 of 4)	intron (NM_025605, intron 3 of 4)	-3937.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	3.87719736426902	3.52742550026708	4.06039883713384	3.66787904575428	3.42834935045232	3.90371632335935	-0.5259129674119	0.375317004261026	0.758646622209238
Merged-chr7-19218086-3	chr7	19217624	19218624	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	5586.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	4.07229287396665	3.92878389222024	4.10937664984116	3.41126338943258	3.6249764315087	3.74832473582708	-1.43770793537612	0.00961830302149867	0.0978790258929859
Merged-chr17-34629291-1	chr17	34628791	34629791	+	617.0	f1_balb.idr	promoter-TSS (NM_030890)	promoter-TSS (NM_030890)	-395.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	2.88583366026928	2.99571646326802	2.93949465924203	3.13563455207816	3.00856146235415	3.18886302048006	0.767236270013608	0.252403135961402	0.649835540406508
Merged-chr7-127713258-4	chr7	127712764	127713764	+	975.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301283, intron 1 of 2)	intron (NM_001301283, intron 1 of 2)	327.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	4.51915185675744	4.34067774590049	4.26981665309429	4.27873437877488	4.28212613595827	4.09501856872965	-0.419723883827032	0.363025459777689	0.748596626036083
Merged-chr17-27913149-1	chr17	27912649	27913649	+	604.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	MTD|LTR|ERVL-MaLR	3843.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.3320216320648	5.33090140923208	5.40933709220466	5.14027402517799	5.19139684021934	5.38426543758742	-0.239775163562527	0.487446783315375	0.828445729506224
Merged-chr4-88390131-4	chr4	88389559	88390559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48867.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.68373627248085	6.16513581895738	6.26256414635634	6.7006338564188	6.53164051613383	6.2155901926956	0.175103398724146	0.577331694434927	0.872117086580778
Merged-chr11-116306766-4	chr11	116306251	116307251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016857)	promoter-TSS (NM_016857)	-1.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	5.14654862737895	5.25690654172719	5.42254506063142	4.81343667391419	4.88133881146457	5.19085746901807	-0.655529865258312	0.0827527701189309	0.380551149334365
Merged-chr10-84571305-4	chr10	84570811	84571811	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5636.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	2.99551881281114	2.83106999134087	2.97463708814528	2.9303235790022	2.99694090807227	2.79928805953171	-0.0851733900965042	0.903228240335937	0.977776532861582
Merged-chr9-15301581-4	chr9	15301083	15302083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	24.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	7.11713936055698	7.19398655717975	6.94715423640274	7.07420617480574	7.21511823478239	6.72554130194093	-0.0939265151133236	0.724478256814408	0.929418317431141
Merged-chr5-113773490-2	chr5	113772990	113773990	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	678.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	7.30941845306811	6.809052817296	7.33342813391691	7.6125674824022	7.45622721542358	7.31291323342248	0.446061643161387	0.0989016965628215	0.419360626745723
Merged-chr15-78579648-4	chr15	78579157	78580157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	1932.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	4.54908332521009	4.41809404252091	4.95330669367658	4.57945514823135	4.21235643831259	4.88637569386316	-0.174612546084957	0.718142666572035	0.927293456311605
Merged-chr13-98946746-4	chr13	98946263	98947263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-20379.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.14683592625608	5.98388100259075	5.93873861988985	5.90566592323605	5.89582513769043	5.5044859555698	-0.412955012950332	0.194365672397799	0.581622092928155
Merged-chr8-115632378-4	chr8	115631873	115632873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.04257093676079	5.9890507729768	5.74447177037415	5.70552315448533	5.63547730895145	5.97761154981386	-0.303954649807049	0.338090078344886	0.728000347830431
Merged-chr2-93566359-4	chr2	93565815	93566815	+	956.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-76119.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	3.00270660758735	3.02840853693635	3.4449407014308	3.17319543852431	3.57130724344379	3.18264030788689	0.646874179620873	0.348579695022964	0.73643821920708
Merged-chr3-9879676-4	chr3	9879184	9880184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46005.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.55036633652084	4.73028207985992	4.49943305248052	5.26375031488697	5.12361992441568	5.08411185030836	1.23200333477881	0.00181871533848652	0.0287030595708649
Merged-chr8-86827390-1	chr8	86826890	86827890	+	673.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	57868.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.31670417634688	4.23078474538155	3.95441304293381	3.15191428343779	3.17921438402061	3.41507237971064	-3.84238939475861	1.17919887730703e-07	8.29406425891491e-06
Merged-chr8-117340431-4	chr8	117339944	117340944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-8726.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.38918567951824	7.1419687449535	7.34773409280467	7.53677380577691	7.63766244811744	7.21819842195221	0.279946472979901	0.263702744210183	0.661672520184135
Merged-chr8-108721035-4	chr8	108720518	108721518	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	6374.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.14505844180456	4.90704768491887	5.18737751987647	4.98483918245301	4.62652523712775	5.15673757944207	-0.33013895611119	0.415431570637817	0.78643843979409
Merged-chr12-44265982-4	chr12	44265469	44266469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-3185.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	4.10992533139895	4.0097577282711	4.18419984252902	3.91810042832356	4.08513795789495	4.33483288018271	0.0504263775363063	0.918522102292102	0.981802133566976
Merged-chr17-6779001-4	chr17	6778494	6779494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	3786.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.87672436080417	7.93618239743538	7.36446711671007	7.56106256309775	8.11702322580657	7.68189359101112	0.0840149402792563	0.767175009646298	0.942573703853445
Merged-chr1-87828501-4	chr1	87827975	87828975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	24795.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	5.3265833795689	5.34450822327187	4.98510552905328	4.83551742106324	4.85065825108559	4.97705596902606	-0.755088376111686	0.045549450709396	0.2694697175397
Merged-chr9-78586987-3	chr9	78586462	78587462	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	1083.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	4.45566808094469	4.23714934533167	3.89631942116766	4.46355606107431	4.48531306418168	4.1337493171898	0.395841946980009	0.437425670846121	0.799946781486006
Merged-chr2-128739547-5	chr2	128739089	128740089	+	821.286682	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	40674.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.50941250442093	5.32047399013944	5.33065466900356	5.29645635779119	5.48409239332002	5.64990388952879	0.166837376068106	0.626992289967481	0.892988961867358
Merged-chr5-88635691-2	chr5	88635191	88636191	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 11 of 13)	PB1D11|SINE|Alu	39889.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	3.02863368706994	3.16726303328967	3.21654591219924	3.13881016788058	3.07341802876048	2.86324148675856	-0.455060606859349	0.504072753124647	0.837433960485568
Merged-chr11-8629413-2	chr11	8628913	8629913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35122.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.94883212376292	5.59416727710352	5.97230410839583	5.68844187976725	5.58755220759964	5.61135938602232	-0.390597144169506	0.229092868308683	0.62456536110314
Merged-chr5-64376017-4	chr5	64375508	64376508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR79|LTR|ERVL	91934.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.1456784047221	5.7913154948726	6.34481304969972	6.43764880682163	6.57466094374639	6.74834275437223	0.800731301081484	0.00864632153813825	0.0910918109072433
Merged-chr13-12931665-2	chr13	12931165	12932165	+	635.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	73665.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	3.00457260678626	2.79519015464462	3.1844802629603	2.87462906717252	2.74636373486154	3.20162804113212	-0.235515026228325	0.74817897311607	0.936880860325556
Merged-chr13-37218147-3	chr13	37217676	37218676	+	929.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127169.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.91629850453345	5.88164552862796	5.67174918349842	5.18922894024676	5.43058355840103	5.47990826491778	-0.866404658468859	0.00886909092898912	0.0926178862976062
Merged-chr16-57390471-4	chr16	57389907	57390907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37130.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.84043502967054	6.83282260750592	6.9635428525017	6.66684306389282	6.82876910609481	6.88409997223964	-0.126258270304933	0.614122943375118	0.887411760755953
Merged-chr11-106419692-4	chr11	106419217	106420217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 9 of 21)	intron (NM_023913, intron 9 of 21)	-36936.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	7.05047625219573	6.97995314922817	6.74137236411253	6.92103630868256	6.87494780526125	7.04543873520118	0.00803287998958013	0.974651454636524	0.994296985713596
Merged-chr2-160451634-4	chr2	160451155	160452155	+	909.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84590.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.10066855745953	3.89746061809607	4.01232262943736	3.67315528089082	3.65795483724493	3.83783294406727	-0.916590914697156	0.0796667144635104	0.373249323033771
Merged-chr10-111189335-4	chr10	111188818	111189818	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	MTC|LTR|ERVL-MaLR	24516.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.72679747476195	4.61353074018896	4.62808474940749	5.0420924269413	4.59283203384939	4.69527314283902	0.306078391989753	0.466723328506306	0.817646675637448
Merged-chr8-106058069-2	chr8	106057569	106058569	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	4.57799785549621	4.88218805852031	4.52196681943224	4.41035297814631	4.66432696988011	4.63115877909478	-0.247573439490104	0.567325854950241	0.867922102830153
Merged-chr1-92675984-4	chr1	92675491	92676491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27150.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	6.27858840705519	6.62902893705941	6.32320137778273	6.16166619376565	6.25030279522611	6.36378795354243	-0.278054723318023	0.332791474872599	0.723870610962255
Merged-chr14-46999170-2	chr14	46998670	46999670	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-2170.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.22001026077132	4.9752803245243	5.0333175432742	5.53583559491732	5.75182647517921	5.10010398350175	0.838523339080656	0.0288629574200148	0.203834169915852
Merged-chr12-76345949-3	chr12	76345456	76346456	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21065.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	2.44379984206716	2.40808915987188	2.59004036754113	2.42098484626265	2.5244106467933	2.40933773819778	-0.142024338624537	0.859648983630363	1
Merged-chr8-13163377-2	chr8	13162877	13163877	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	B3A|SINE|B2	4216.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	4.75570162270811	5.06892456476795	4.95499414615463	5.14472719089897	4.92453535612528	4.79224483555539	0.0719424649103116	0.855579506485874	0.966244542232428
Merged-chr1-93124227-3	chr1	93123723	93124723	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11017.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	3.17502192520692	3.44178294951163	3.30105450551494	3.47586008498413	3.12521066116902	3.42872245094794	0.139097259739677	0.826896483556456	0.959278302444461
Merged-chr18-82843746-4	chr18	82843258	82844258	+	853.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-12139.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	2.76127153743664	2.71981797867633	2.89202041931998	2.80553472632861	2.7791611185798	2.96408657592743	0.299173082526681	0.674338312301099	0.911841916826811
Merged-chr14-57417368-4	chr14	57416860	57417860	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-6711.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	3.48862736425154	3.31578231835661	3.79885531190942	3.54058794086162	3.40068967982146	3.51832795299326	-0.201075692423624	0.737831468435197	0.933858424870961
Merged-chr2-128620780-2	chr2	128620280	128621280	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008569, intron 43 of 47)	intron (NM_008569, intron 43 of 47)	28439.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	5.75219660337428	5.75003352967548	5.82231605474534	5.95366674742513	6.01261726222688	6.13292790417282	0.456620664144603	0.123125610235467	0.469420833125078
Merged-chr2-61645649-3	chr2	61645147	61646147	+	777.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 8 of 9)	intron (NR_149323, intron 8 of 9)	52550.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	2.92835488534721	2.96663416678878	2.74343241034835	2.95395429523375	2.87836120596863	3.2343404033314	0.645522277774119	0.370035689075609	0.754525684725739
Merged-chr11-95415701-2	chr11	95415201	95416201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	B1_Mur1|SINE|Alu	1618.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	8.30947716492503	8.20523752249658	7.79869446346561	8.30962792825339	8.71724046515743	8.23712930733436	0.441488000308833	0.0899378566752337	0.398612398968406
Merged-chr5-116011876-4	chr5	116011378	116012378	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12550.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.19937442280822	4.88804998211608	4.95269442279996	4.59161892099442	4.64481467398092	4.98247423360119	-0.632667724481224	0.120303374826669	0.463771641846234
Merged-chr16-13286671-4	chr16	13286159	13287159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	21580.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	5.31267086644586	5.40518677623231	5.39942623033122	4.90038980845884	4.98948556789391	5.04759333448668	-0.813339832835648	0.0220533079255157	0.172319643695581
Merged-chr3-115715038-4	chr3	115714501	115715501	+	950.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	54.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.76646109908588	5.05726831108309	4.93202475064189	4.16064250731749	3.89954001674001	4.22859637910757	-2.17577972473719	2.71657014201896e-06	0.00013005774935392
Merged-chr12-85710006-2	chr12	85709506	85710506	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016767)	TTS (NM_016767)	23286.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	7.1036160468552	6.79163793188688	6.50588758613422	6.33637420269074	6.3442125897324	5.97630660490604	-0.948258743550047	0.00210366118116015	0.0320882565649814
Merged-chr7-19335847-4	chr7	19335353	19336353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-9218.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	3.65295483926764	3.65435106965313	3.74003093870557	4.45444008949865	4.24728514022097	4.17055101344917	1.90035236323969	0.000222521121239187	0.00545698127205137
Merged-chr7-6151439-2	chr7	6150939	6151939	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	4532.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	5.28552781210381	5.26654872328183	5.50229044834577	5.17160701553894	5.05432737589245	5.61597016309574	-0.120231728597727	0.749254146811855	0.93722412559109
Merged-chr5-103763162-4	chr5	103762669	103763669	+	891.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	8596.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.65594572475249	4.89096705950519	4.98942235128035	5.01998108609193	4.78087390895237	5.29722963179416	0.422753147676031	0.303575885013973	0.700122713774969
Merged-chr16-16549258-2	chr16	16548758	16549758	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	10961.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.88850372527309	3.85771343774997	3.84946029797906	3.69395229981121	3.70528328588618	4.01348585817231	-0.200448947026183	0.703788710454608	0.922261697710238
Merged-chr3-20003089-3	chr3	20002625	20003625	+	807.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 15 of 16)	intron (NM_080634, intron 15 of 16)	32185.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	2.9055623534623	2.85649732593676	3.1595367810895	2.85361673254408	2.74471063506956	2.76234733473971	-0.933472223082287	0.1957581268342	0.583438527663774
Merged-chr2-128749241-1	chr2	128748741	128749741	+	579.0	f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	Charlie2b|DNA|hAT-Charlie	50326.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.14076061971115	6.01120419686569	5.9890633641942	5.95250334315244	6.02525430597146	5.90650479000794	-0.146738910835088	0.614132280926963	0.887411760755953
Merged-chr10-80169256-2	chr10	80168756	80169756	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152857, intron 1 of 7)	B1_Mur3|SINE|Alu	1417.0	NR_152857	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	3.74964739511593	3.3081367208942	3.82713506936601	4.08357990310091	3.70131325603504	3.74362092340993	0.684170013215488	0.253370254141884	0.650818120355465
Merged-chr6-114843051-4	chr6	114842539	114843539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	78782.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.29753497934053	6.45804591591177	6.50168771749583	6.65306309937811	6.54237115908847	6.54349714202705	0.262539883552127	0.321444637355156	0.714882390432811
Merged-chr13-8869881-2	chr13	8869381	8870381	+	675.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	1163.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.90871126491856	5.07073590658548	4.87578715259183	5.15431253773257	5.20953204110462	4.73806273345333	0.223461082487057	0.572344620009583	0.869819295413984
Merged-chr5-141055680-2	chr5	141055180	141056180	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55084.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	6.60935618051344	6.76439635957773	6.04897771697626	6.710857676301	7.1835997387428	6.13690648871133	0.380413390021111	0.315028255971701	0.709395445939035
Merged-chr9-107634160-4	chr9	107633665	107634665	+	768.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1177.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	6.15703920981943	6.2680020935732	6.56450063276743	6.58412855816097	6.25868551314565	6.84573361291629	0.392561973052623	0.20570630480669	0.596286716960635
Merged-chr7-101310833-4	chr7	101310322	101311322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6264.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	7.4870859081376	7.47401329478535	7.39796534789705	7.48460711031559	7.7534173403391	7.36671298415756	0.144813806702464	0.545058247219116	0.858019423019685
Merged-chr6-113837957-4	chr6	113837470	113838470	+	820.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 2 of 19)	intron (NM_001036684, intron 2 of 19)	53569.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	3.25992803997921	2.92827591523167	3.11324067193064	3.22217023377586	3.14601355647693	2.87053787009707	-0.0701975073536637	0.920460308642103	0.982373545010764
Merged-chr12-105821471-3	chr12	105820960	105821960	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 15 of 21)	intron (NM_011112, intron 15 of 21)	36763.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.06742361342618	4.17813269087817	4.29873672996363	4.15284552179258	4.05858446755703	4.14365469128724	-0.178896118381757	0.705030364930179	0.922687087430656
Merged-chr3-107630746-4	chr3	107630247	107631247	+	880.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153563, intron 1 of 20)	intron (NM_153563, intron 1 of 20)	963.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	4.72585769477683	4.52974666047154	4.6513579988401	4.44272696844588	4.43392541008334	4.59858660324847	-0.369314800315192	0.380639714420886	0.762654274303092
Merged-chr18-65534254-3	chr18	65533684	65534684	+	924.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-46046.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	2.70189627051471	2.52909258566465	2.70523992828583	2.69834133191791	2.77082824813408	3.06216060611109	1.0938659176795	0.151930838182363	0.519706523472891
Merged-chr4-133650188-4	chr4	133649683	133650683	+	908.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-16754.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.8962433359199	4.2330696525656	3.98736012155159	3.65401072434077	3.92144106514942	4.05599764888319	-0.499694600886681	0.347220069584448	0.73535818040629
Merged-chr2-3422657-2	chr2	3422157	3423157	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355205)	promoter-TSS (NM_001355205)	-9.0	NM_008579	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	6.12015865141579	6.30123697726013	6.16399814099956	5.93729651348372	6.22479095757347	6.16098592176902	-0.141044159349637	0.627981009480782	0.893474066598445
Merged-chr1-180851749-2	chr1	180851249	180852249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 1 of 6)	intron (NM_145943, intron 1 of 6)	598.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	7.91198876873956	7.94990274845205	7.17056573229586	7.68437479247247	8.10272829146372	7.63953785111937	0.140249233700143	0.642564788302916	0.899438418121699
Merged-chr19-57355637-4	chr19	57355158	57356158	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	5241.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	5.2676480171558	5.24898008910589	5.53405065645232	5.28295230480415	5.02480051784791	5.31181090484737	-0.289684987398943	0.421990326182458	0.790886119805167
Merged-chr15-91254329-4	chr15	91253839	91254839	+	866.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62332.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.23167952310063	4.40860271118686	4.41994733038	4.05941368980863	4.26480492061442	4.22542305725123	-0.445845895241108	0.335387040578084	0.725511519189957
Merged-chr2-90504945-4	chr2	90504448	90505448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25774.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.39551185193106	6.93865037576328	6.9219133443997	6.82115384713639	7.03517107216113	6.98017784294984	-0.245356399026567	0.36900372813533	0.753809303364759
Merged-chr6-24160001-3	chr6	24159501	24160501	+	929.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019481, intron 1 of 14)	intron (NM_019481, intron 1 of 14)	8091.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	3.26300254549077	2.90633961552088	2.99264947076138	2.70331084059523	2.68173108418386	2.6853383480443	-1.97647165839826	0.0102965122308013	0.102500439493126
Merged-chr9-44603653-4	chr9	44603152	44604152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89|LTR|ERV1	-1240.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	7.85255511955565	8.13308592788846	7.75099223664466	7.96402823016465	8.26756540400268	7.88427998796639	0.18153831984046	0.458833342804633	0.813236440920954
Merged-chr10-78373031-7	chr10	78372496	78373496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21296.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	6.55734731166734	6.5644736328838	6.72097350059656	6.47934551575557	6.5963581430767	6.48023579804351	-0.1385240635557	0.595740585059213	0.879624917514409
Merged-chr18-65376246-3	chr18	65375764	65376764	+	955.35553	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037294, intron 2 of 12)	intron (NM_001037294, intron 2 of 12)	17624.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	2.14551770827189	2.04215925573793	2.26857158780333	1.88425473162182	1.87632843819714	1.94733664441574	-2.20924035199484	0.0317079313337425	1
Merged-chr8-111237478-4	chr8	111236982	111237982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	21720.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	5.81482907009348	5.8640108206578	6.13205806866163	5.84887284334299	6.15617736818432	5.85259154357935	0.0638818438512248	0.839098592773453	0.962694797186053
Merged-chr4-108406575-4	chr4	108406075	108407075	+	974.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024198, exon 1 of 3)	exon (NM_024198, exon 1 of 3)	138.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	6.21893859629458	6.46262187622024	6.14515442488055	6.53679101314971	6.69398335898911	6.69118611220927	0.567114314536337	0.0405836228114409	0.251143989803241
Merged-chr19-47050484-2	chr19	47049984	47050984	+	780.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	422.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	3.86399820290352	3.81353114171935	3.89765964170084	3.94146811808854	3.61693214662567	3.86797846948256	-0.150410613142827	0.776180333066992	0.94480820353868
Merged-chr2-150920779-2	chr2	150920279	150921279	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	B3|SINE|B2	11185.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	4.91729954659441	5.23009858424628	5.04989297118666	5.00767978919656	4.97611601466529	5.08000950137516	-0.121937278461907	0.744484317229628	0.935982277711273
Merged-chr8-124744866-2	chr8	124744336	124745336	+	631.75	f0_balb.idr|f1_balb.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	6973.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	3.36820748972046	3.39037733721212	3.52950674901844	2.92470909255393	2.8883489515801	2.84598246391792	-2.58370674575891	0.000467756304261377	0.00997976065768734
Merged-chr19-55740844-6	chr19	55740359	55741359	+	842.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-951.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.77608785245602	6.56721389159668	6.86541612261491	6.81115289482431	6.99228984957452	6.95144126403149	0.289074075373571	0.260933528959371	0.658521360261207
Merged-chr8-72586223-1	chr8	72585723	72586723	+	1000.0	f1_c57bl6.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	14400.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	3.55897950022959	3.33007729504445	3.78997116499329	4.2284880092751	4.42646503852794	4.06548485971253	2.24600863791518	8.06109473147108e-05	0.00236345162232645
Merged-chr1-171466769-4	chr1	171466243	171467243	+	970.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	29182.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	5.69591487117212	5.51642128338408	5.91023995380057	6.1821359180347	6.12653172643379	5.87481959105338	0.652535313342831	0.0389846099329172	0.244867344081872
Merged-chr3-79234269-4	chr3	79233763	79234763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	21344.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	5.04558755271929	4.92609773068286	4.79962181317321	5.39897504099204	5.37517868025177	4.86776358785215	0.655846017305048	0.0971652279514281	0.41563891294164
Merged-chr6-54936743-3	chr6	54936242	54937242	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	34919.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.650964228657	3.73516011870494	3.79392758810674	4.2485619679675	4.19815957784387	4.25058679439501	1.55009635785719	0.00208414521237238	0.0318958165957479
Merged-chr3-130691546-4	chr3	130691045	130692045	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	17899.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	4.17824978020279	4.21277208072513	4.16628237466118	4.11868370219816	4.26737453514644	3.93511145529111	-0.171564865632089	0.722719061799972	0.928916928569298
Merged-chr9-116100977-2	chr9	116100444	116101444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	(CA)n|Simple_repeat|Simple_repeat	74419.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.30860908365067	5.54578212365652	5.47793207876472	4.80927845431741	5.18824000748579	4.99585845082185	-0.873084651576417	0.0195183093389311	0.15884099146844
Merged-chr11-68440238-4	chr11	68439725	68440725	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	8100.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	3.80238020149047	3.70593289641844	3.87826409488454	3.70397816860337	3.40303507458009	3.94654515849976	-0.334594455055945	0.559412651723657	0.8649455419793
Merged-chr16-44765777-4	chr16	44765292	44766292	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021325)	promoter-TSS (NM_021325)	56.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	6.0747293415463	6.21384873227047	6.47845328853664	6.25918586913525	6.40992620278911	6.23878864303461	0.0904220157197728	0.755346579614877	0.939280126322077
Merged-chr17-47757289-4	chr17	47756792	47757792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	19361.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.65416204408105	7.74900664443799	7.068831204985	7.72551982289017	7.62332929424496	6.70284361107448	-0.140872544632638	0.798709894940462	0.952063885260145
Merged-chr3-105789989-4	chr3	105789480	105790480	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	MTD|LTR|ERVL-MaLR	11401.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.9534057273008	5.11544875760884	4.76464458655647	5.26108039847292	5.09939599537785	5.29475208982301	0.526814577284546	0.163709377464275	0.537749158771312
Merged-chr19-11851125-1	chr19	11850625	11851625	+	651.5	f0_balb.idr	Intergenic	Intergenic	4826.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	2.66728745325925	2.64909274822725	2.7999442422805	2.41851107901784	2.51524784324535	2.44044989934797	-1.47388466186925	0.0699555336190093	1
Merged-chr9-7567531-4	chr9	7567034	7568034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008611, exon 10 of 10)	exon (NM_008611, exon 10 of 10)	-3862.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	6.4408060718504	6.47158486716433	6.17833261713359	6.43238766821318	6.41728344716824	6.02984276574433	-0.0998410324115263	0.735465596213291	0.932744628746236
Merged-chr15-78573639-2	chr15	78573139	78574139	+	830.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-856.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	6.05097979821831	5.6612104614206	5.42365240693149	6.18701600625287	5.89951904503557	5.98689481752029	0.488111488662045	0.156197622349903	0.526509692545705
Merged-chr2-73037885-4	chr2	73037382	73038382	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57436.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.70394986295994	5.79539446518345	5.7910288440907	5.75608947653495	5.78391915651462	5.58295502133145	-0.0804280997227213	0.795358731921688	0.951097385363376
Merged-chr13-43481295-7	chr13	43480777	43481777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019930)	promoter-TSS (NM_019930)	-304.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	7.42815389918757	7.39709111931148	7.30972497820842	7.46549902915672	7.3220497254699	7.45331035428514	0.0436086252217662	0.847732916386242	0.964318271116593
Merged-chr16-91884113-2	chr16	91883613	91884613	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	47517.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.60987961859787	2.56081025852741	2.65431562254149	2.5176812614461	2.13275141115293	2.33847487257831	-1.77665859032161	0.0597948168413708	1
Merged-chr4-130818645-1	chr4	130818145	130819145	+	544.0	f1_c57bl6.idr	exon (NM_011520, exon 3 of 5)	exon (NM_011520, exon 3 of 5)	26108.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.91777518670467	4.10471707398999	4.34682718456145	4.33552738339151	4.19966219669853	4.04977376489738	0.218355855725524	0.658134976630554	0.904937992416562
Merged-chr19-6293486-4	chr19	6292982	6293982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12975.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	7.26184807440601	6.92950846437838	7.221047029389	6.90330795800427	7.2493513601376	7.28979610548967	0.0228866322458674	0.930877459545446	0.984702308464168
Merged-chr11-98918407-4	chr11	98917908	98918908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	10257.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	6.82808139945584	6.75357689229994	6.73701822919835	6.99270171232795	7.22139045148321	7.01503731891376	0.477826691494307	0.0538107169484872	0.297507118661111
Merged-chr15-86188145-2	chr15	86187645	86188645	+	889.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155352)	TTS (NR_155352)	-2004.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	3.49057615785532	3.29124405655372	3.72524514421003	3.5508270138973	3.35283601824035	3.43255019085398	-0.222412861737239	0.712866044842292	0.92531822516521
Merged-chr10-120208771-4	chr10	120208264	120209264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-62.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	8.13389848388811	8.36537135257213	7.89483995022162	8.3554608094709	8.62195993794532	8.06140857507582	0.310909743147283	0.22880458403021	0.624086141348775
Merged-chr9-71952736-4	chr9	71952233	71953233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	MIRc|SINE|MIR	-56637.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.56192578953498	6.74308464179487	6.33423755188287	6.72026997812407	6.8858095236019	5.76158465091729	-0.00851868754583139	0.982083576577172	0.995980212202506
Merged-chr13-100835769-2	chr13	100835269	100836269	+	606.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2342.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.31430408240031	4.43720016184012	4.77584642835183	4.38464855283062	4.06902398653142	4.24533488466764	-0.728106268275943	0.124917477142567	0.472868997683394
Merged-chr8-25044298-4	chr8	25043790	25044790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-5328.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.17812309975911	4.58436359799326	4.99273953202533	5.31058296486299	5.31342217440948	5.02206379546682	0.599802968073555	0.142297327654907	0.503626014074169
Merged-chr6-16892094-4	chr6	16891613	16892613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	6328.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	7.64771293466564	7.91306848375869	6.96421042273636	7.29743772545223	7.65190677922898	7.47534894545789	-0.135427535946633	0.662346707609476	0.906777186880082
Merged-chr2-118518680-2	chr2	118518133	118519133	+	704.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25954.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	3.04828230401241	3.22335525570782	3.28088996555884	3.42320644412525	3.20585622393588	3.61480906135415	0.932768748847556	0.145493623090946	0.508671180619635
Merged-chr12-79156995-4	chr12	79156482	79157482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009705)	TTS (NM_009705)	15476.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	7.47015997436792	7.39920029243166	6.97706389810083	6.11768841115228	6.06587428057725	5.70337210034793	-2.0929706417396	7.15844417410745e-12	1.1960639012834e-09
Merged-chr10-67025683-4	chr10	67025160	67026160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	MTD|LTR|ERVL-MaLR	20585.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	7.30361567314858	7.11807140837592	7.02602015680798	6.99480292329421	7.50865606716996	6.94253428580328	0.0450832460497458	0.872712119896082	0.970272084673997
Merged-chr8-83989444-4	chr8	83988950	83989950	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008854, intron 5 of 9)	intron (NM_008854, intron 5 of 9)	-8222.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	5.4663896055455	5.24615094381958	5.12190160652463	4.87053072194701	5.096917678981	5.2196413664338	-0.466086015455978	0.212009301355533	0.604420229358776
Merged-chr16-37579257-3	chr16	37578764	37579764	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-889.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	4.69227278941301	4.8522237216746	5.24288891632876	5.26075303796678	5.51006806052447	5.36640412464921	0.935493043645156	0.0154963737170179	0.135741963915657
Merged-chr19-23116432-4	chr19	23115926	23116926	+	713.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24800.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.1474583443493	3.06459610807056	3.40776552169855	3.30860756385728	2.97703566486862	3.57829041870959	0.382242178295504	0.576491960443287	0.871585692229598
Merged-chr19-53783808-3	chr19	53783295	53784295	+	777.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	Lx9|LINE|L1	106489.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	3.16401790972908	3.40908566745947	3.83051807077485	3.53134207565632	3.33536206804629	3.4120273658456	-0.238190366600258	0.714051573377425	0.92568727653408
Merged-chr4-63372127-4	chr4	63371613	63372613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 18 of 21)	intron (NM_001045514, intron 18 of 21)	9664.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	4.60223462972016	4.70425042289052	4.24092937606375	4.38369549735457	4.55453157043039	4.31119590594743	-0.282612291940161	0.538486705493355	0.855203059561888
Merged-chr11-87025538-4	chr11	87025042	87026042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31780.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	7.27763363250724	7.34132608483786	7.29061336024672	7.20539460340052	7.37641013747126	7.16955763869571	-0.0657590427242283	0.777839896598927	0.945251190347279
Merged-chr11-94031450-4	chr11	94030953	94031953	+	969.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 2 of 28)	intron (NM_027569, intron 2 of 28)	-12752.0	NM_001025430	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.01786208104897	5.93964565039767	5.56550055304218	5.93753866202957	5.85881817957829	5.2964311398293	-0.2218355455351	0.541726635748144	0.856909109885968
Merged-chr5-102046178-4	chr5	102045673	102046673	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23748.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.70186014085723	6.26321906970545	6.33639249188964	6.49737839588207	6.29095340723605	6.3768889804193	-0.105363354394075	0.718182282413349	0.927293456311605
Merged-chr1-51478465-4	chr1	51477974	51478974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310549)	promoter-TSS (NM_001310549)	-75.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	7.9239943152634	8.2665130253111	7.77900090498187	7.92880017200942	8.24257373632097	7.74566721747957	-0.0223889560015552	0.931877511023236	0.984959488143389
Merged-chr5-115529299-2	chr5	115528799	115529799	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	22623.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.45194813844359	6.49888518845987	6.51851722410904	6.39884238078951	6.71404785768061	6.66117763492904	0.179917006083134	0.503035581247861	0.83670140357385
Merged-chr15-83510896-4	chr15	83510369	83511369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178869)	promoter-TSS (NM_178869)	38.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	4.32728790810805	4.20302731884014	4.36923870020179	4.25104055631431	4.25634136528525	4.11718468233691	-0.225757789189286	0.62286600153624	0.891249034616027
Merged-chr10-40128688-4	chr10	40128191	40129191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	13563.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	7.42881745222075	7.11826428719567	7.32093959672804	7.43900329066378	7.33148157589172	7.35612907404317	0.120342518332184	0.61365411544631	0.887300906025089
Merged-chr1-62722500-6	chr1	62722025	62723025	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	19208.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	4.41134443362578	4.51559853248868	4.65340832472474	4.30701548034661	4.16313570617301	4.30975168455636	-0.70028848613877	0.116111604484717	0.455053761852599
Merged-chr5-62761453-4	chr5	62760943	62761943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	4734.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.72692288500521	6.37816831006135	6.47473250185791	6.55549416454719	6.62476166897861	6.62109814574227	0.100056920765749	0.712195286469843	0.924979269005305
Merged-chr3-116124046-1	chr3	116123546	116124546	+	619.0	f0_balb.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	5642.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.27129279579175	5.16162426810083	5.57009085225166	5.25378065854177	5.26805420549405	5.55307104388957	0.0449407453147781	0.901030722476102	0.977060870926891
Merged-chr11-83271681-4	chr11	83271192	83272192	+	973.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15034.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	7.26142255042501	7.37486992156792	6.83498836710211	7.23216747734452	7.29709634966717	6.84601874365585	-0.0575937411940517	0.838786554756885	0.962592773676812
Merged-chr8-46109750-1	chr8	46109250	46110250	+	544.0	f1_balb.idr	intron (NM_207213, intron 2 of 17)	intron (NM_207213, intron 2 of 17)	14396.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.7450746721367	3.78140053099386	3.8620560319028	3.56699488268416	3.29400175541998	3.68374657549505	-0.982112841759296	0.0884656184377108	0.39477888978682
Merged-chr8-13502829-2	chr8	13502329	13503329	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8294.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	2.87076909568523	2.90885581016751	2.87819505955145	2.85068272642398	2.79751712842254	2.95059687198203	-0.114875086608692	0.868524333445394	0.969652123135977
Merged-chr2-72262998-4	chr2	72262475	72263475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-22662.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.88464865311543	3.81390807022899	3.87498039814592	4.24330766952927	3.98095724046616	3.84027943543546	0.542681548166177	0.291416825793708	0.689051679650718
Merged-chr17-80139806-2	chr17	80139306	80140306	+	635.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 2 of 6)	B3A|SINE|B2	12335.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	3.00122235278603	2.70082674676401	2.91661950744719	2.34236082348589	2.33282867256034	2.55827280602456	-3.2695418978991	0.00083598306488263	0.0156620747413086
Merged-chr1-136169980-2	chr1	136169480	136170480	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 29 of 34)	intron (NM_001039472, intron 29 of 34)	38590.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	2.35930267841363	2.32546145461191	2.54308618305168	2.31995515654314	2.34524660061901	2.55526482676546	-0.010456527311456	0.989878641635531	1
Merged-chr15-61986650-3	chr15	61986103	61987103	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	1262.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	7.29624324743833	7.41266896218751	7.38539355827833	7.38620655695281	7.44219273750853	7.26282548215564	0.00870897800980823	0.969658093130766	0.993198925979166
Merged-chr13-44768022-2	chr13	44767522	44768522	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	B4A|SINE|B4	36751.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.57971807241154	3.71344554519367	3.88092009344813	3.70069858413154	3.51768707068957	3.70403199782023	-0.291605566863138	0.598618954781747	0.880808927175713
Merged-chr5-23787632-4	chr5	23787133	23788133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177323)	promoter-TSS (NM_177323)	-78.0	NM_177323	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	4.92031783850222	4.89840105851995	5.08127562055518	4.87709090303435	5.03914111091088	5.07875159782301	0.0821578816609335	0.826762130852239	0.959278302444461
Merged-chr17-28621893-4	chr17	28621390	28622390	+	804.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016795, intron 2 of 15)	CpG	631.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	5.36123899162044	5.08760324443562	5.43923544002567	5.38530898325704	4.95756976818343	5.26353600511181	-0.183511151767749	0.626311409424512	0.892873937904836
Merged-chr9-61915174-2	chr9	61914674	61915674	+	950.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-664.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	7.65883559397785	8.16487802933807	7.6492100806066	7.72726970649747	8.00757424150058	7.76929869986262	-0.0147179937143881	0.955014974932901	0.989683851514547
Merged-chr4-88707314-4	chr4	88706818	88707818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15190.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	7.01007484204225	7.20546920405781	6.91310862972997	6.8588893768933	7.11557511142489	7.30787156639703	0.0733561525945839	0.780898027283133	0.946078518476608
Merged-chr8-41006473-3	chr8	41005986	41006986	+	922.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10982.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.8044459745073	5.82609480751601	5.73005325598811	5.80142521072338	5.77278528534521	5.65657041159108	-0.0747898968733627	0.806542470214713	0.954199878599014
Merged-chr8-110622053-3	chr8	110621547	110622547	+	712.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	3480.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	3.80462633460188	3.68592851109624	3.5608985823978	3.8985918660041	3.86836687375632	4.09022860438058	0.817961383279183	0.127297782590983	0.47693250005991
Merged-chr5-110841209-3	chr5	110840705	110841705	+	826.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016681, intron 1 of 14)	intron (NM_016681, intron 1 of 14)	1188.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	3.69429747919718	3.93975950636913	3.63816535018649	3.5021180814159	3.45390585132346	3.48625831440279	-1.02326395135209	0.0723054305463826	0.353157446871531
Merged-chr11-101316177-4	chr11	101315695	101316695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011192)	promoter-TSS (NM_011192)	-18.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	8.27278072787527	8.36322977292322	7.99262857363169	8.17534140053816	8.23414501382519	7.85401214513447	-0.168259142880348	0.480116876909278	0.824491110103264
Merged-chr11-32620167-4	chr11	32619667	32620667	+	936.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22388.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.69417618875781	3.47531703191823	3.49962674304905	3.74998342229859	3.82738206424715	3.68278863222603	0.667043608689063	0.230046440523366	0.625817164441292
Merged-chr6-113226920-3	chr6	113226421	113227421	+	784.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-10922.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	3.21170718107513	3.00834305540556	3.17926863510953	3.3048046986774	3.4015829294284	3.36548379451479	0.932952653365217	0.138597941396219	0.497503210563778
Merged-chr2-75687587-3	chr2	75687102	75688102	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	17061.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.8263090751436	4.79458892239413	5.09915485124821	5.0649380097802	4.703697193425	4.92552203340193	-0.00706509042117769	0.985936243132438	0.996983483442674
Merged-chr9-31931887-4	chr9	31931378	31932378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18593.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	3.87175062494071	3.55055556866002	3.48121888667821	3.11977293061636	3.12880619094849	3.32433284607467	-1.8551123977949	0.00394691976392402	0.0514193361071849
Merged-chr8-6119655-3	chr8	6119172	6120172	+	972.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014385.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	2.97855937400392	3.21564542346593	3.39553567110596	3.5509118764468	3.372285185465	3.72097684357743	1.36594360683715	0.0357908543055563	0.232527125814298
Merged-chr10-19583222-4	chr10	19582716	19583716	+	907.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8733.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.12353730924996	6.13520143175257	6.19970327599041	6.29697735257147	6.35537184521336	6.57059336889263	0.424760174760361	0.127073561686534	0.476395344690209
Merged-chr11-114893968-5	chr11	114893486	114894486	+	950.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347654, intron 2 of 6)	intron (NM_001347654, intron 2 of 6)	3945.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.80824911876039	5.71739648810023	5.96221026008486	5.63291029076814	6.17079916958009	5.80704624527137	0.135030852520965	0.685263329445833	0.916203803074919
Merged-chr4-155122065-3	chr4	155121570	155122570	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	35466.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.69205945104309	4.77809410178845	4.5799079110682	4.12981260576626	3.86029762603254	3.93935010243448	-1.94783146622042	4.51864663174995e-05	0.00145000983006035
Merged-chr2-165323399-2	chr2	165322899	165323899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-2573.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	3.66039555767352	3.38322657924642	4.1490780443734	4.0522688844477	3.70606607806098	3.90204205252274	0.402542797875409	0.507932979443934	0.839522621885284
Merged-chr14-76402756-4	chr14	76402257	76403257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12204.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.97747039004718	4.50244906821076	3.97842124756075	4.07788624488483	4.13779096388758	3.83246978370728	-0.444502403807861	0.4081544413879	0.781951435784775
Merged-chr7-43644398-2	chr7	43643898	43644898	+	912.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	9659.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	5.13934360707016	4.31190134794884	4.58335512446339	4.87334883667911	4.52811566300246	4.84926954516493	0.0493004255614109	0.918855897225002	0.981844538421417
Merged-chr4-9671763-2	chr4	9671263	9672263	+	693.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.3907604559239	3.35281541831861	3.16308051924942	3.30686776466929	3.23318063177855	3.35307157725479	-0.0658597281371478	0.915083941060599	0.980959026698783
Merged-chr10-7924433-4	chr10	7923920	7924920	+	812.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	28645.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.25912129086153	4.17644225447698	4.13632035457991	4.28926310932935	4.29188723901143	4.73650383464119	0.661825267982949	0.162361852799948	0.535842287006085
Merged-chr9-35183545-4	chr9	35183074	35184074	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177847)	TTS (NM_001177847)	-7587.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	4.29537592281822	4.41321957344219	4.725750958169	4.43425350559552	4.44792202573505	4.39555438639449	-0.130354263005436	0.770808809555596	0.94345245755247
Merged-chr2-91963055-2	chr2	91962555	91963555	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	508.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.89179742547404	5.80667540647198	5.9508418418026	6.06368019492711	5.70959109015289	5.81863153517017	-0.0182900914003964	0.953085192697437	0.989359300570295
Merged-chr11-118404658-4	chr11	118404168	118405168	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2709.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	4.19122242207384	4.10999481608413	4.03670092709164	4.33895407109943	4.03252748673772	4.29217138761173	0.290519363745894	0.545501609002465	0.85819810705005
Merged-chr2-118295629-3	chr2	118295094	118296094	+	744.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	-9320.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	1.85812117090703	1.9521614608885	1.91818811356414	2.07278519899246	1.94985794252287	2.26116601940306	1.4966536331386	0.124067979040299	1
Merged-chr4-34778390-4	chr4	34777910	34778910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330756)	promoter-TSS (NM_001330756)	-44.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	5.60237638865735	5.92301826631674	5.79452696622067	5.65251545187057	5.75031015637897	5.43464436692018	-0.275019595277785	0.404304741548857	0.77945770433258
Merged-chr12-77058806-3	chr12	77058323	77059323	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96575.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	5.51027251602093	5.63246682324921	5.65153854795545	5.17099722991356	5.19491884317297	5.28323272181346	-0.750377603584963	0.0250577602026066	0.187298428938061
Merged-chr11-58307737-4	chr11	58307200	58308200	+	953.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182996, exon 2 of 12)	exon (NM_182996, exon 2 of 12)	631.0	NM_001040686	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	4.24538637779988	4.54740519058026	4.44574574270822	4.4669940809057	4.06934204132816	4.42844939459629	-0.243793008650037	0.604889386379464	0.883259091356564
Merged-chr18-53921169-4	chr18	53920676	53921676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59063.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.52328936781822	6.57857588638831	6.26062329467666	6.66097292759749	7.0035899906908	6.40454835005588	0.409410084884186	0.172637127181554	0.551230561617291
Merged-chr17-27909785-3	chr17	27909268	27910268	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	462.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	8.53142841493377	8.43673930891855	8.22853396371815	8.33804397126359	8.40045235511477	8.31559485706414	-0.0789212365834568	0.708988208797509	0.923861312746116
Merged-chr9-111270382-2	chr9	111269882	111270882	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026810, intron 1 of 18)	intron (NM_026810, intron 1 of 18)	1226.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	4.60232157914263	4.57960453061796	4.09287113555572	4.41180512870918	4.14306509797864	4.11209836404108	-0.58834519476617	0.231044563850621	0.626813326547916
Merged-chr6-91441405-4	chr6	91440898	91441898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	411.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	7.29582585774026	7.44578110186071	7.23055757624107	7.29076728468447	7.47358485263818	6.67033461983941	-0.18838822071823	0.523895250509936	0.848428438699863
Merged-chr2-102990902-4	chr2	102990405	102991405	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82608.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.02509135762167	5.92511353372898	5.92256640615955	5.8071710961598	6.12514792412879	5.96000876998249	0.030658744746029	0.91908350977805	0.981911787266722
Merged-chr19-56749635-4	chr19	56749125	56750125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27253.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.65678279843743	6.76969053199502	6.70877578996153	6.64848293896491	6.88484316298048	6.70359817608881	0.0671819558788747	0.793432619097084	0.950419517589402
Merged-chr3-145105120-3	chr3	145104621	145105621	+	947.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6015.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	4.73131380721942	4.3661077382966	4.08317510828547	4.25531446953123	4.17113865170819	4.25385282636639	-0.542920765874356	0.268410268807803	0.665530987612523
Merged-chr16-76363207-4	chr16	76362732	76363732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	9817.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.69148045550233	6.75257778291485	6.58071820900454	6.76327968570049	6.81103861422568	6.56950499914103	0.0700867912898618	0.786525394728653	0.948530822116986
Merged-chr12-32230259-4	chr12	32229763	32230763	+	746.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21614.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.43607943917078	4.39758304060572	4.22816954329871	4.28309210029017	4.01340543337176	4.47048341632445	-0.280202589293365	0.555605453085029	0.863289501518253
Merged-chr16-30968626-4	chr16	30968150	30969150	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	112782.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.3141525991107	6.21609066862592	6.07565794043782	5.26957044326658	5.07217220069165	5.41300451905327	-1.78622262192347	3.43917219560327e-08	2.77831689370638e-06
Merged-chr4-44981448-4	chr4	44980953	44981953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312880)	promoter-TSS (NM_001312880)	59.0	NM_001312880	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	5.30006861793986	5.68595101949211	5.3323046535856	5.48408454522488	5.08744721676542	5.36469033160901	-0.284276777257472	0.4412975474836	0.802541555514607
Merged-chr13-42051684-4	chr13	42051144	42052144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-377.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	8.30903132663884	8.19306161797942	7.92820881789098	7.99944382557441	8.19289418012212	7.76335282549206	-0.216821997951096	0.372047247779638	0.755997445123458
Merged-chr11-50208270-3	chr11	50207761	50208761	+	822.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	intron (NM_001290769, intron 1 of 7)	2559.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	3.9378067697743	3.90106651298285	4.01502566677237	3.71350184530502	3.64457980372729	3.62792943075358	-0.933854577382804	0.0767708463172556	0.365088219715735
Merged-chr15-58344096-4	chr15	58343630	58344630	+	910.179199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19961.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	6.52919350218193	6.48781020568086	6.41125066947735	7.02120742920153	7.24608313740796	6.72285782917128	0.852574492271631	0.00190909532131103	0.0298145652206548
Merged-chr13-101907903-4	chr13	101907383	101908383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139666.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.74747006133209	7.87397128320375	7.48123455495838	7.66859479838456	8.05809191049107	7.42895203205106	0.0563478733444599	0.835637690852139	0.961787999211487
Merged-chr17-85018315-2	chr17	85017815	85018815	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-10032.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	2.9967306809537	2.99659289897857	2.97605157998285	2.74903128607673	3.01943017950183	2.80111234713254	-0.579412414156129	0.419432292032084	0.789006446666644
Merged-chr7-126896938-2	chr7	126896438	126897438	+	728.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_028389, exon 3 of 6)	exon (NM_028389, exon 3 of 6)	1340.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	6.39680646253222	6.34591376555062	6.91007061687446	6.75673733335579	6.92485827300606	7.03257715011296	0.538646619235258	0.0652299497801341	0.332979675515999
Merged-chr17-74526840-2	chr17	74526340	74527340	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1455.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	5.6495226034307	5.94083572072058	5.78772077776781	5.7324660640921	5.80020980633333	6.07853219868866	0.124714742963734	0.696000482101474	0.919291538728398
Merged-chr3-148322129-4	chr3	148321635	148322635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	632500.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.71608971959503	3.67691158939599	4.17328469162988	3.73966304044196	3.75275475815987	4.02512116738601	-0.0786199511284609	0.887559273514044	0.973836995667151
Merged-chr12-34680980-2	chr12	34680480	34681480	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-152091.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.19341139998913	5.45990593719793	5.46640806949329	5.51662259170152	5.29518360357956	5.50054475508318	0.114969257935672	0.739684288979714	0.934245371298156
Merged-chr5-3387387-4	chr5	3386893	3387893	+	938.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	43500.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.29527274356399	5.56363665609109	4.86451963521117	4.83650755960105	4.52524967055838	4.38368801936503	-1.49329838424024	0.000813299235995201	0.0153506444145083
Merged-chr2-148520937-4	chr2	148520421	148521421	+	899.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77386.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	4.38518462307457	4.41818185094363	4.1662095124002	4.35883109833758	4.0019425209681	4.37236060011623	-0.235578908824114	0.622279615209998	0.891053569604973
Merged-chr5-150599682-4	chr5	150599187	150600187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362416)	TTS (NM_001362416)	-5162.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	6.8775441254447	7.02972305833526	6.76064701448417	7.32310596048965	7.56138156202357	6.88327118101246	0.601236328698211	0.0342006018524475	0.226303274667074
Merged-chr14-31437453-2	chr14	31436953	31437953	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1353.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	2.59315435343861	2.86080861700172	2.72498729812837	3.14776043729941	2.71831250679841	3.04677610942367	1.22711192596149	0.110080193524876	0.443363350300229
Merged-chr9-113026261-3	chr9	113025766	113026766	+	875.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	560886.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	3.95175417170445	3.7269111335729	3.77767706291645	3.36013799481391	3.50907122914636	3.69447606712875	-1.04090570710051	0.0680808139481179	0.341417536171971
Merged-chr2-167348081-4	chr2	167347577	167348577	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1101.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.02939970616167	5.96928927212662	5.75014114389867	6.01886668933802	5.84351415575327	5.55256794785271	-0.178463978036648	0.58064125521489	0.872913159715266
Merged-chr10-60274077-4	chr10	60273580	60274580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3548.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.10360731446797	6.89478630094881	7.17244189435069	6.73717867932003	7.09238643073078	6.84651519473524	-0.228012346868926	0.385585455890566	0.766591069902819
Merged-chr4-137356233-2	chr4	137355733	137356733	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	PB1D9|SINE|Alu	1526.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	6.5072242675368	6.51581701048678	6.14481018961668	6.36360812615375	6.76789975884406	6.39292638191983	0.19960563749044	0.505623833230098	0.838177729332582
Merged-chr6-122602404-4	chr6	122601898	122602898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	46.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.60438029266716	7.54306606584675	7.18182460438603	8.04441121144962	8.21705311153015	7.60553475971895	0.755062786216272	0.00545084384405432	0.0651189970676342
Merged-chr10-43910812-3	chr10	43910342	43911342	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130892, exon 4 of 9)	exon (NM_130892, exon 4 of 9)	9035.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	4.54178944988952	4.67673643553714	4.99428717805885	4.34537747226349	4.49513762802082	4.67651092282682	-0.562463908027848	0.200672731960038	0.589895311274317
Merged-chr8-39636216-3	chr8	39635722	39636722	+	996.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	6456.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.67006937234963	5.75901436064036	5.83982422482113	5.72411061821161	5.76117904769997	5.67093365380255	-0.0554105390338194	0.857203324641347	0.966715109874457
Merged-chr11-17005095-4	chr11	17004597	17005597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	RSINE1|SINE|B4	3621.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	8.12077663912014	8.23271058856131	7.94916373989274	7.78409385674806	8.33196774672535	7.78097609174214	-0.15039824869764	0.564156679208028	0.866201054824694
Merged-chr7-125621907-3	chr7	125621409	125622409	+	857.6889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	PB1D10|SINE|Alu	18480.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.19667740719953	5.25922770326616	5.42585458813472	4.95075865803438	4.59161137670628	5.02664403082919	-0.928063508064151	0.0171252997676638	0.145627178647702
Merged-chr4-133659658-4	chr4	133659196	133660196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12951.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.73892031075019	6.70956520991545	6.81078014869425	6.52223438989452	6.60031885643323	6.51452394783193	-0.319024331080536	0.209130950728092	0.600440569620892
Merged-chr3-67558486-2	chr3	67557986	67558986	+	594.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-24282.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.39588844876999	3.25079035437763	3.41452776317735	3.83288095139549	3.83617635466483	3.54556378150912	1.45525839095691	0.0131372051080767	0.12163353317379
Merged-chr6-83599100-4	chr6	83598584	83599584	+	944.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26580.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	6.9034272869722	6.50466017197245	6.24265453866106	7.38357247464831	7.24951636088352	6.20953016722547	0.71678880057886	0.245516395775921	0.642641425012514
Merged-chr3-95646256-2	chr3	95645756	95646756	+	823.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12465.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.92552340190412	5.88024165511139	6.1094597003733	6.23008792124051	6.14044433250266	5.89325446935523	0.235330837133788	0.433100666920727	0.797623786395605
Merged-chr3-81110922-3	chr3	81110415	81111415	+	638.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	74499.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.73484315579571	4.86028138927741	4.63680001031711	4.89532267276992	4.90958149705954	4.74547415977553	0.234628061986402	0.553267110968891	0.862238984416102
Merged-chr11-97243153-3	chr11	97242661	97243661	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 5 of 22)	intron (NM_008942, intron 5 of 22)	37415.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	6.58324088251568	6.952378553684	6.88044440288263	6.76856321268844	7.07857419396454	6.93868709988039	0.192606356428531	0.474209906727767	0.821307119018463
Merged-chr11-17454920-2	chr11	17454420	17455420	+	828.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197232.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	2.8487091392397	2.96416414092478	2.66010415026315	2.8280351901209	2.80130043511952	2.9848911609276	0.170491855612077	0.816239676341579	0.956616423430214
Merged-chr5-125376066-4	chr5	125375575	125376575	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13942.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.11449189378478	4.0937757290363	4.00121414619887	4.08409977121697	3.95844633295047	4.02113968019381	-0.159934888830774	0.741085747014666	0.934742147011145
Merged-chr11-107446847-3	chr11	107446360	107447360	+	638.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	23860.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.6625348242341	4.9484890684418	4.6438302314792	4.96734797298055	4.75063414035226	5.3258004756231	0.568995387919658	0.181244107482134	0.563574247882485
Merged-chr10-81426578-2	chr10	81426078	81427078	+	820.383301	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 1 of 8)	intron (NM_026756, intron 1 of 8)	595.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	4.66463647988747	4.41470646635103	4.30237257062874	4.61689244631657	4.69239637101093	4.2228633053375	0.152058155117003	0.744166599958655	0.935908079523582
Merged-chr6-26206222-4	chr6	26205703	26206703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274777.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.78058951917782	4.98986897321812	5.08695118441268	4.85585981656863	5.11967535941912	5.11794057667202	0.183680289847074	0.633264847532548	0.895983904773527
Merged-chr4-126430480-4	chr4	126429974	126430974	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-932.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	7.32235429130893	7.6481383656684	6.96380569440007	7.50034620884461	7.80281131736904	7.45002834925249	0.360524410703378	0.201802692792214	0.591440895419483
Merged-chr9-107576923-4	chr9	107576427	107577427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331161)	promoter-TSS (NM_001331161)	0.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	3.23799370512196	3.45832445233318	3.42641100067054	3.76523789440629	3.2628793719901	3.32490859629398	0.353999943458119	0.576524693875086	0.871585692229598
Merged-chr9-14275127-4	chr9	14274634	14275634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	6.01814638577951	5.77054675377388	5.41498776346295	5.64098419077256	5.36714607005663	5.34821233867545	-0.57491247791184	0.107129845881126	0.436813848977152
Merged-chr16-20693273-4	chr16	20692755	20693755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1802.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	6.4068319824158	6.19062046793535	6.21973178711	6.32036993911008	6.2727529368498	6.25936864824263	0.00985275380125565	0.971613008369631	0.99377981119604
Merged-chr11-63924268-3	chr11	63923766	63924766	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.13170648908429	2.85677703092092	3.02927109636849	3.40590658394964	3.06580256067088	3.33562386474515	1.13894826158878	0.0953637914236456	0.411621121341241
Merged-chr18-60210767-4	chr18	60210286	60211286	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1291.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	6.0016758498336	5.75995565366112	6.18417388127226	6.46676710619658	6.42720749050028	6.34340751828563	0.730273586424445	0.0125949292258561	0.118247961098887
Merged-chr16-33886803-4	chr16	33886298	33887298	+	922.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	57133.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.90238064737561	5.70809284759966	6.01614902291706	5.73055983582579	5.88989910715426	5.71504495288706	-0.154004946416653	0.622233471971663	0.891009890820853
Merged-chr7-46919929-4	chr7	46919439	46920439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	30.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	7.64742346883277	8.0598086694176	7.9206299957481	8.05950550067032	7.9522530228859	7.86596826743647	0.107591047012121	0.646209719845779	0.900938614137053
Merged-chr5-120907603-4	chr5	120907131	120908131	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145211)	promoter-TSS (NM_145211)	-106.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	5.4131114127314	5.27323319171352	5.33382318011942	5.84431040792591	5.98569597006614	5.52408026063342	0.880575047143618	0.00901746205370938	0.093778900458074
Merged-chr5-151651207-4	chr5	151650723	151651723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027009)	promoter-TSS (NM_027009)	-15.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	7.04288282533386	6.91007789094836	6.90670789445355	7.17589401240047	6.87478647049913	6.93641183476013	0.0686252487445756	0.785286846197553	0.947853081776201
Merged-chr13-69534109-4	chr13	69533603	69534603	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-239.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	6.29676095747248	6.09307214969334	6.54914937060691	6.15088650037208	5.70876288442888	5.84844621353164	-0.688680704156959	0.0323062855122931	0.218436729668413
Merged-chr2-16169498-2	chr2	16168998	16169998	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-186806.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.38645117757966	3.19857451388891	3.16385322733919	3.20973367823731	3.15600419153269	3.23631265735334	-0.242272428932302	0.700533132063703	0.920919335036368
Merged-chr7-99378173-2	chr7	99377673	99378673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3345.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	5.96321098781338	5.61839660399494	5.99761934050371	5.93362338597256	6.07400231405566	5.96730687379919	0.233097303748122	0.454167187031494	0.810100393169515
Merged-chr4-134779529-6	chr4	134779020	134780020	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11516.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	3.56189266114077	3.35070587807306	3.44254817044582	3.22983408484793	3.25494142068179	3.34729135094371	-0.708138892547098	0.242242965263459	0.639326946903326
Merged-chr9-63780726-4	chr9	63780209	63781209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22715.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.8100906549023	5.96741650279815	5.90581162465014	5.8230008219681	5.55875003232628	5.6040542704992	-0.415569125260633	0.184150587918459	0.567763528958023
Merged-chr2-98667155-4	chr2	98666683	98667683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199526.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	14.4758505327287	15.9653469502271	13.7837249833833	15.2757696290637	15.0576779755712	14.1736666010485	-0.230466426899288	0.790071130590708	0.949368241827272
Merged-chr4-53158100-4	chr4	53157574	53158574	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1821.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.91125886448443	8.25016990773184	7.95425172581724	7.85236286123105	8.17162055840785	7.8673884739447	-0.10329653891454	0.666616278534186	0.9082780021178
Merged-chr11-75178033-2	chr11	75177533	75178533	+	690.916687	f1_balb.idr|f1_c57bl6.idr	exon (NM_027136, exon 2 of 2)	exon (NM_027136, exon 2 of 2)	775.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	4.26764402581161	4.45057710173443	4.79773184961228	4.79553197763318	4.65429845537413	4.75329309225502	0.534341923837059	0.22251117305003	0.617465722432781
Merged-chr8-84981758-3	chr8	84981285	84982285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.66236975028714	8.59498388728645	8.41194737765338	8.62212739502349	8.86837728773195	8.57761026643531	0.187766019623201	0.384931562353545	0.766070343813858
Merged-chr12-3860857-3	chr12	3860343	3861343	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	1401.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.17889795226015	4.77992929018519	5.37673633488411	5.44229113803098	5.31411210165803	5.01412971628647	0.305192741682343	0.445413463430922	0.805134764189264
Merged-chr1-128743806-3	chr1	128743413	128744413	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-151614.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.75144457463924	3.61044584734037	3.37558733694133	3.11833625889024	2.8927237092315	3.33306895555921	-2.01112699099733	0.00389220975405316	0.05088185219407
Merged-chr10-80063684-1	chr10	80063184	80064184	+	665.5	f0_balb.idr	exon (NM_183426, exon 17 of 32)	exon (NM_183426, exon 17 of 32)	9665.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	2.70784256548428	2.55853151416636	3.24224512119036	2.78049209414974	2.8767744095408	2.93211126870761	-0.0217132503760571	0.97821376987353	0.995070777384379
Merged-chr1-162565723-2	chr1	162565224	162566224	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4791.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	5.98580871925315	5.62795848274423	5.66276136591394	5.78852730839085	5.93000059171371	5.42336435206511	-0.0514132215124458	0.881646727528385	0.972846584805466
Merged-chr1-135730481-4	chr1	135729992	135730992	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	1325.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.07339128353349	5.16598208053295	5.03366056025216	6.01124538593527	5.87600330016215	5.78224938811221	1.52215691352648	5.22440711989037e-06	0.000230128357666404
Merged-chr6-28867752-4	chr6	28867250	28868250	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-36003.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.83870580522887	3.7214157867999	3.66370392709597	3.91443949593902	3.90457470293043	3.73529006192773	0.358758669137078	0.497122768735828	0.833442633454308
Merged-chr17-24073514-4	chr17	24073004	24074004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027008)	promoter-TSS (NM_027008)	-19.0	NM_027008	69259.0	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	7.00968741823281	7.31090675140036	6.8528003277701	7.09978456194536	7.04823185792055	6.59199300704629	-0.208262255309582	0.468115215503758	0.818365636852607
Merged-chr3-135438677-2	chr3	135438177	135439177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	-12.0	NR_030689	319587.0	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	8.88088147443184	8.43019677752604	8.29992913542614	8.73556703829922	8.33925690904627	8.36777922634645	-0.0997308677118054	0.700737837496043	0.921002460903367
Merged-chr14-79517421-2	chr14	79516921	79517921	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	1747.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.75221017424174	5.85647963731661	5.84716267923221	5.84697075525139	6.11526268170263	6.00316126524469	0.316237430011672	0.294293626311667	0.690997913486686
Merged-chr14-31205893-9	chr14	31205323	31206323	+	856.962952	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 1 of 13)	intron (NM_001347583, intron 1 of 13)	1003.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	6.38831232929957	6.08774367368235	6.51475996774215	6.393946265435	6.20728377494348	6.13205142561502	-0.13713105886382	0.643432488948444	0.899801366759477
Merged-chr4-125131485-7	chr4	125131020	125132020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3639.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.65463458114638	4.45182834850593	3.99413965428194	4.17373520308338	4.0399912610751	3.77894410519919	-1.0701446165311	0.0476970545549788	0.276650661033617
Merged-chr1-157101302-4	chr1	157100799	157101799	+	974.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305061, intron 5 of 8)	intron (NM_001305061, intron 5 of 8)	7351.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	3.31166003011729	3.06997277253128	3.16183757000286	3.59050722931335	3.54047109777633	3.63082081153102	1.57183799148621	0.0117406578800339	0.112521378257466
Merged-chr13-119596463-4	chr13	119595948	119596948	+	842.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-27371.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	2.64313555172865	2.67984184680688	2.96455961074544	2.53808837824008	2.69197610298261	3.44729874643803	0.846386253827185	0.320904782155805	0.714648154651698
Merged-chr12-70977135-2	chr12	70976635	70977635	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011184, intron 1 of 10)	intron (NM_011184, intron 1 of 10)	2512.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	3.30665501216472	3.25137756909145	3.45351467972917	3.36465676078483	3.26140515193125	3.62518245029895	0.319383083803501	0.602019481607498	0.882187830872038
Merged-chr14-70950134-4	chr14	70949651	70950651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	60044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	6.16957427607331	6.27321103609564	6.27828920792381	6.08716408701015	6.0463780334692	6.25975482273122	-0.191234305849998	0.497472276911889	0.833642268846104
Merged-chr11-76845718-4	chr11	76845207	76846207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007754, intron 1 of 20)	intron (NM_007754, intron 1 of 20)	1301.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	5.4464598017039	5.30725496642155	4.96720474040583	5.05320533138419	4.94645577889483	4.79282431188868	-0.682117473668916	0.0783093437886824	0.369490438217674
Merged-chr16-91441656-4	chr16	91441150	91442150	+	905.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-23454.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	4.88091739005153	4.94916560040273	4.59021003417712	5.14588602032639	5.23900858760479	4.83194180306562	0.576892055924527	0.154403881875112	0.523666674943519
Merged-chr3-146404595-4	chr3	146404115	146405115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253768)	promoter-TSS (NM_001253768)	-27.0	NM_001253769	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	3.87705762632244	3.42062924036529	3.74709752158583	3.49588662371901	3.27210211721356	3.19752937566604	-1.34896465577906	0.0338733653843758	0.225122602787791
Merged-chr18-54848360-2	chr18	54847860	54848860	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141820.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.69482792743535	6.09914074587132	6.01217114394016	5.78408769291187	5.83997069330743	6.02873704553901	-0.111954483500625	0.723964281985977	0.929178878081464
Merged-chr9-15357787-4	chr9	15357267	15358267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176976)	promoter-TSS (NM_176976)	21.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	7.23033849585555	7.53808586344104	7.29516530400945	7.16437400780449	7.38967341813123	7.12166069644096	-0.188754820804822	0.448733787777522	0.807435525666415
Merged-chr9-57562508-2	chr9	57562008	57563008	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	1564.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	6.17953474705224	6.14355618615117	5.8949269367731	5.92956879902299	6.27064003611369	5.93175817329018	-0.0355211503330619	0.908467065065808	0.979259582109985
Merged-chr2-90492803-2	chr2	90492303	90493303	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-13629.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.94301303444218	4.97408912790288	5.30921570021606	5.3431521241466	5.31474709663047	5.1153843462098	0.400994128359581	0.278431037498746	0.675623815920472
Merged-chr13-23401812-4	chr13	23401320	23402320	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22046.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	2.84943804382669	3.04901678007143	2.87588316306154	2.59801414384422	2.46729251835224	2.57460666749847	-2.44456238394041	0.00344553964685622	0.0466987972147607
Merged-chr11-16670478-4	chr11	16669936	16670936	+	896.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81767.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	3.67909742806391	3.81819539314038	3.92858632129735	3.72133858758335	3.97491889960325	4.13277468923806	0.442747930142112	0.404323230078416	0.779475158786053
Merged-chr2-6295242-3	chr2	6294746	6295746	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-27511.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.53347954255049	3.52253830268711	3.55068991094657	3.62294972001775	3.49041104243727	3.72463369685843	0.264924590700708	0.636620701967809	0.89720767300409
Merged-chr3-65315930-4	chr3	65315410	65316410	+	916.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 7 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	-13225.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	3.55470683623457	3.85799047937593	3.48342682402658	2.96161784947364	3.08054830699612	3.14170446983601	-2.50904932476037	0.000312614464586898	0.007211539886151
Merged-chr14-17660136-4	chr14	17659639	17660639	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-821.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	7.06339145655096	7.53670638974473	7.24029952194473	7.05069008728203	7.14999732125211	6.94845460065895	-0.362737841982255	0.165929890865438	0.541089092560861
Merged-chr14-13551339-4	chr14	13550825	13551825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	97367.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	3.1467679067045	3.19277022617959	3.10393485736963	2.91321270219558	2.76846770057857	3.3407600209027	-0.551844554568263	0.444891994523196	0.804541708256239
Merged-chr5-88631082-4	chr5	88630563	88631563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	44517.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	7.71412152058428	7.85417401333272	7.47060570817868	7.66429909035325	8.00539028400826	7.35946820708152	0.0287184453596133	0.915927099288132	0.981201223155309
Merged-chr6-48555743-2	chr6	48555292	48556292	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177736, intron 1 of 2)	RMER2|LTR|ERV1	993.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	4.08347969351442	4.09775700005075	4.16968555266487	4.55524734772402	3.91634721365298	4.49539616565055	0.627179723791743	0.220628373143775	0.615199565226559
Merged-chr17-56674241-4	chr17	56673738	56674738	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252467, intron 1 of 13)	URR1B|DNA|hAT-Charlie	1013.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	6.26622935682493	6.1509861720551	6.1807268258219	6.41800397679293	6.41519269995838	5.98832480610446	0.167729236097482	0.569534614844579	0.8688875602138
Merged-chr7-127184987-4	chr7	127184482	127185482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11095.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	6.03168154707513	5.13462495785171	5.29227402250495	5.67024663943343	5.73533967540834	5.42370894759513	0.110677271135714	0.788586447078837	0.94895503373255
Merged-chr14-52314501-5	chr14	52313872	52314872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	1951.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	4.53856096088029	4.41035392693261	4.49920862752763	4.67357947158394	4.59093693397166	4.76405410914872	0.461550443488028	0.267544770032038	0.664791268994708
Merged-chr17-28179852-2	chr17	28179352	28180352	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	2434.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	2.75692716350486	2.65116923019397	2.94423815876137	2.80079707193624	2.89443600724345	2.83848318057281	0.320614132594054	0.657423837327449	0.904798742244684
Merged-chr16-89872423-6	chr16	89871911	89872911	+	937.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54059.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	7.04640830405731	7.24823208399726	6.677349407176	7.02169014738097	7.08129981447968	6.83486785386375	-0.0528175465858418	0.848241846195097	0.96433314940637
Merged-chr7-145110279-2	chr7	145109792	145110792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97827.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	6.03675575163055	5.62189850208093	5.65339059922839	5.96697435089979	5.91784981405955	5.44197080792067	0.0307057114849029	0.930361129760491	0.984492513131011
Merged-chr10-51494430-2	chr10	51493930	51494930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 6 of 8)	intron (NM_001291894, intron 6 of 8)	3532.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.49873588721957	4.54356886777004	4.49517485000703	4.48573001055866	4.44310860500014	4.19464413834239	-0.314841706888523	0.474791496027778	0.821664499521211
Merged-chr13-94972755-2	chr13	94972255	94973255	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3589.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	3.73045941384432	3.76161727320229	3.73743681444592	3.93332131985471	3.8166580936121	3.95739098774034	0.500880672544867	0.332515704535892	0.723636403333698
Merged-chr10-42504472-4	chr10	42503954	42504954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	intron (NM_017472, intron 1 of 3)	2400.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	5.65876815074532	5.66065531037462	5.76791776942409	5.56464130923459	5.90274207488925	5.87764924734488	0.181784505322735	0.568501471713082	0.868598429274735
Merged-chr11-32557473-1	chr11	32556973	32557973	+	698.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	24207.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.24579984318026	6.23974671540036	6.16499584692954	6.36681594269676	6.16686052811126	6.30713953837114	0.0969101595312843	0.726836663241463	0.930054055622982
Merged-chr4-138288870-4	chr4	138288367	138289367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010623, intron 8 of 14)	intron (NM_010623, intron 8 of 14)	-15871.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	2.84404806490882	2.85497323889024	2.90836415037119	2.8234699660616	2.95658892880736	2.66426327274349	-0.202300087130265	0.781978487502288	0.94634558043998
Merged-chr9-121315715-2	chr9	121315215	121316215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	18213.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.23989263740371	6.62919671425748	6.38099129712717	6.59799027076896	6.71831392793405	6.82251075701606	0.449605646890287	0.106534501545869	0.435795821475279
Merged-chr15-79039107-4	chr15	79038607	79039607	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013847)	TTS (NM_013847)	-2778.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	2.07277169637945	2.04438318027108	2.27869137977181	2.16353397870518	2.07092440049841	2.02139709605415	-0.330219274271868	0.717528138829509	1
Merged-chr10-41584697-4	chr10	41584189	41585189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 33 of 47)	MLT1L|LTR|ERVL-MaLR	16673.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	4.06276569766023	4.06046358656592	4.20337868183569	4.65424627912996	4.14525322613388	4.48868783371654	0.901589248859727	0.0618347638133774	0.322842138440936
Merged-chr3-136087218-2	chr3	136086718	136087718	+	625.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	238848.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.65696786595519	3.56428321667489	3.74599669131674	3.37708773633724	3.48390104151024	3.55992698617578	-0.647781334638442	0.2549741763901	0.652024436103169
Merged-chr16-17452428-2	chr16	17451928	17452928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277231, exon 1 of 2)	5' UTR (NM_001277231, exon 1 of 2)	443.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	6.21446824399227	6.55096648867139	6.425938336459	6.65173366136459	6.49713516809722	6.33115731254375	0.161475108949514	0.568942145844006	0.868793137665407
Merged-chr7-114254489-8	chr7	114254011	114255011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033370, intron 1 of 21)	CpG	169.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	8.12901413873942	8.22084531888542	8.01270926016727	8.18590735038789	8.17337153090829	7.98550337574592	-0.00750847900467937	0.972123622328586	0.993868590220018
Merged-chr5-99254024-4	chr5	99253505	99254505	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.4571963454053	7.49155448606694	7.56373613525488	7.52970429793422	7.92458153067507	7.62053954922134	0.301241312293004	0.207104610371064	0.597920729067479
Merged-chr2-166031229-4	chr2	166030728	166031728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	38591.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.7118773950566	6.52824352074587	6.43516450181571	6.90447710088359	7.16871172996082	6.43601785649384	0.49612901133575	0.103041452454267	0.427977521169197
Merged-chr1-36068784-2	chr1	36068284	36069284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015818, exon 1 of 2)	exon (NM_015818, exon 1 of 2)	384.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.24417752975604	7.34220751433359	7.48425378652347	7.19924021888114	7.20445121732963	7.34605964048221	-0.16059631791484	0.494171970295698	0.831821998694449
Merged-chr17-26467790-3	chr17	26467285	26468285	+	901.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.30141340326424	4.0828497269933	4.01402947186706	3.87845767651114	3.5649119807436	4.12992600616534	-0.824675778177718	0.13037660400561	0.482568746844423
Merged-chr1-6204889-3	chr1	6204374	6205374	+	854.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9788.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	3.2314856563664	3.20113102029359	3.30699106602972	3.18541093352697	3.08490939867144	3.15104388324089	-0.451997302873618	0.472878970719401	0.820550293768681
Merged-chr6-29263770-4	chr6	29263282	29264282	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8706.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	5.64608232236294	5.22094270537093	4.95697390292167	5.73511078167764	5.31702155504058	4.76361814605328	0.0490310240523048	0.915553258913426	0.981098991199737
Merged-chr15-78601448-2	chr15	78600957	78601957	+	713.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	4410.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.28798010985958	4.46604939581848	4.56144605282243	4.59099324920206	4.21100658660214	4.77608292328867	0.241475746667838	0.604205276303862	0.883003945319161
Merged-chr1-55529710-3	chr1	55529224	55530224	+	864.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123778.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.81432687970929	4.77642209549656	4.82129720785355	4.12083888186248	4.01405602809576	4.07159959043823	-1.94214789929564	1.8258072077844e-05	0.000675808568262119
Merged-chr2-144008559-2	chr2	144008059	144009059	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2704.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	4.86178144644648	4.83873687613816	5.32658811671056	5.39640194268992	5.33955792945668	5.41832495525649	0.761073921752287	0.0430601847066113	0.260283925357336
Merged-chr11-102496358-4	chr11	102495847	102496847	+	828.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-26464.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	5.6012089234396	5.21516067423116	5.29776781877885	5.52858050463485	5.54498746984326	5.39384258676398	0.209044796208557	0.548481613936199	0.859764603751126
Merged-chr6-72598495-4	chr6	72598000	72599000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026159)	promoter-TSS (NM_026159)	-87.0	NM_001253692	232089.0	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	6.58041945828322	6.76540722718945	6.71687017671066	6.64754524600084	6.78985108412977	6.52284415774563	-0.0352146592036067	0.893277297795129	0.975210713351106
Merged-chr13-42515132-3	chr13	42514624	42515624	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-165675.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.02734354159621	3.16595037496716	3.10480212379772	3.01212245253364	3.04908134906864	3.11843833869162	-0.190333805489457	0.770463237842331	0.943392092118189
Merged-chr11-53430433-4	chr11	53429954	53430954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025352, intron 1 of 1)	intron (NM_025352, intron 1 of 1)	377.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	8.73997714649143	8.85778265144006	8.37532342818245	8.61579524640205	8.69461888519944	8.18857388532937	-0.213074800281882	0.399351736515821	0.775786409824397
Merged-chr3-10213442-1	chr3	10212942	10213942	+	896.0	f0_balb.idr	Intergenic	Intergenic	-4826.0	NM_024406	11770.0	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|AFABP|ALBP|ALBP/Ap2|Ap2|Lbpl|P15	fatty acid binding protein 4, adipocyte	protein-coding	2.54516113686235	2.59973260678188	2.75391744482893	2.57216583337021	2.62422918608588	2.44715493949873	-0.444898248305586	0.571875244710218	1
Merged-chr1-64308212-3	chr1	64307674	64308674	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186785.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.82171380404925	6.96627790757526	6.69653664619984	6.44812406292321	6.68101237170323	6.57087467083243	-0.418864180553434	0.112197928154146	0.447436626208972
Merged-chr1-160234781-3	chr1	160234280	160235280	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 6 of 8)	RMER6A|LTR|ERVK	-21888.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	5.35388361159843	5.5478275052154	5.21212302816433	4.25295534150793	4.27986618186226	4.61341881561712	-2.32786403908965	2.94971225087459e-08	2.41812469921944e-06
Merged-chr9-108344956-2	chr9	108344458	108345458	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2873.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	3.43640584286819	3.21141555787718	3.43998328387191	3.46697959151393	3.1492527428665	3.45692822395428	-0.0156196731050969	0.980040401402068	0.995416130723271
Merged-chr11-116103718-4	chr11	116103229	116104229	+	861.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6506.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	5.40983716795588	4.96915859470967	5.33521174712062	5.3261908053491	5.31015224545372	5.59422715649882	0.317292047882411	0.389732498892588	0.769295008014766
Merged-chr14-63142506-2	chr14	63142006	63143006	+	817.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	20044.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.7726809752683	3.62625900148927	4.14577102802219	3.7888831880637	3.62015009501885	3.90132645353893	-0.280851271078072	0.615768323934454	0.88811014762473
Merged-chr15-103239502-4	chr15	103239013	103240013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	339.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	6.5868860744098	6.35903092323574	6.53081186255078	6.66042148987625	6.69768484256058	6.59004527400243	0.255649121459266	0.330084644492928	0.721715864639844
Merged-chr1-151596850-2	chr1	151596350	151597350	+	717.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	25477.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.77617864106168	5.90438001986661	5.73320255171089	5.74694928078789	5.78179426288394	6.01117919775385	0.0576108820467241	0.852077053898584	0.96531854415899
Merged-chr10-12875065-4	chr10	12874543	12875543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13308.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	5.95844533847698	5.39886151158431	5.11223549571504	5.78119652741885	5.57325084690838	5.48865211118173	0.128450360085406	0.745107264541799	0.936032341688524
Merged-chr4-88315243-4	chr4	88314774	88315774	+	808.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	(TCCC)n|Simple_repeat|Simple_repeat	123652.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.58914759892117	3.47175042391861	3.23734955574163	3.25231181502823	3.14741185363803	3.68863445491137	-0.249897177936927	0.703808896182165	0.922262518413016
Merged-chr6-124998357-2	chr6	124997857	124998857	+	821.541626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	-80.0	NM_001145927	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	4.76633133075447	4.44812535952589	4.84515478127277	3.88654344280123	3.7064780854733	3.95042747436234	-2.43972674003151	1.85116739572045e-06	9.27903232910283e-05
Merged-chr12-98776891-2	chr12	98776391	98777391	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 10 of 14)	intron (NM_001008506, intron 10 of 14)	5869.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.56073083286336	3.54198345776465	3.64834521662725	3.28341645001185	3.39405131192675	3.56407224777089	-0.62225512014766	0.286380508501914	0.68363782585898
Merged-chr3-79539916-4	chr3	79539451	79540451	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	27728.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.00494181770996	3.76376663382917	3.64095080697419	3.51334836116003	3.52593962672427	3.71199721126605	-0.804603774832323	0.152102818295537	0.520013451274295
Merged-chr2-167489255-2	chr2	167488755	167489755	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356523, intron 1 of 3)	MT2B2|LTR|ERVL	-3390.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	3.82296609718041	3.75297555556849	4.08497016712628	3.91741249533203	3.67072736521898	3.82505411120708	-0.263294714692393	0.621764219994096	0.8908398051148
Merged-chr16-44832493-4	chr16	44832001	44833001	+	952.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207244, intron 2 of 5)	intron (NM_207244, intron 2 of 5)	11773.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	3.66676621897183	3.43387097030596	3.24375352840676	3.51838576031101	3.52948825734539	3.4955250543387	0.17423837955315	0.773548691606132	0.94412263195524
Merged-chr2-52869813-2	chr2	52869313	52870313	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	11945.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.63179433861501	3.84975151550146	4.02086964815217	3.38213361871252	3.50959626047271	3.4368255383527	-1.3697998891341	0.01955951965101	0.159029559421657
Merged-chr11-80378022-4	chr11	80377523	80378523	+	766.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027472)	promoter-TSS (NM_027472)	-8.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	4.77857469190038	4.61079918651834	4.74818025366225	4.99043508952955	4.94698198974503	4.99828811779535	0.595313479841242	0.122688125863936	0.468651405999466
Merged-chr17-5572652-2	chr17	5572152	5573152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	80052.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.00070037542569	8.03175922054163	8.13126171390447	7.96658767052066	8.17688848607768	7.50548369192786	-0.184896089181877	0.47325017634428	0.820806684174151
Merged-chr2-132816129-4	chr2	132815616	132816616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356443)	promoter-TSS (NM_001356443)	-25.0	NM_025676	66634.0	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	7.33844719516652	7.71204124101002	7.22595866226246	7.42786279276703	7.45414124747429	6.97319000080426	-0.202435655569491	0.467045278116512	0.817749374019291
Merged-chr4-11455014-2	chr4	11454514	11455514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-30944.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	5.92978269163785	6.16740897824267	5.7317823864777	6.5493016340148	6.67789015055963	6.01074812060143	0.8179910534359	0.0143390567853334	0.128791608169249
Merged-chr2-144338307-3	chr2	144337809	144338809	+	737.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-6229.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	4.19677764911833	3.99054515989357	4.2476151506713	3.970321984252	3.95783207530906	4.0917041040333	-0.413868551016185	0.396533366541806	0.773652887901204
Merged-chr3-16182397-2	chr3	16181897	16182897	+	714.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-768.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	5.45105371823907	5.46479951177815	5.48457432146938	5.25629186897817	5.27795723631243	5.70472623533763	-0.0969567511651957	0.781897412412236	0.946316742076881
Merged-chr19-4112346-4	chr19	4111829	4112829	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_075078, exon 22 of 24)	non-coding (NR_075078, exon 22 of 24)	9246.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	5.01422578271328	5.09176467424886	5.47534925048006	5.16409906510348	5.22739032860608	5.0441050927392	-0.0883369475634493	0.814890515189718	0.956370078970016
Merged-chr6-48571470-1	chr6	48570970	48571970	+	598.0	f1_c57bl6.idr	TTS (NM_177736)	TTS (NM_177736)	1332.0	NM_001347168	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	2.98051442648649	2.66591372821129	2.83315395261587	3.13853697064967	3.04233262213631	3.20621785740494	1.39650774589745	0.0532265426070568	0.295751195809548
Merged-chr10-77537857-3	chr10	77537378	77538378	+	965.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7530.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	6.21049982821219	5.84877067138745	6.12913416176568	6.18775418858092	6.09965134234954	5.96360957038026	0.0381177767795657	0.899607976412029	0.976656120908248
Merged-chr5-105145921-4	chr5	105145411	105146411	+	959.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6325.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	5.79875206026282	5.76278057964567	5.53592361510702	5.964417131228	6.43643600639967	6.27815678658691	0.923742765442358	0.0038898634764814	0.0508751587788533
Merged-chr10-81497375-2	chr10	81496875	81497875	+	683.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010102)	TTS (NM_010102)	-1012.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	4.08467417380512	3.93971033984666	3.99115094708309	4.27118773873057	4.0826742632101	4.2486014836143	0.548694705060016	0.253962979646511	0.651117231535132
Merged-chr10-17723150-4	chr10	17722651	17723651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-77.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	7.03857272163641	7.18245443168805	7.24852401777596	7.2408665201251	7.17177857523864	7.24848820338519	0.0946474493847276	0.687429487604333	0.917146819342952
Merged-chr14-76505961-3	chr14	76505471	76506471	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1461.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	4.94951988197302	5.2114437692132	4.75719073839775	4.02158318051517	3.82561255873802	4.1569785390326	-2.67261800212214	3.41883718173171e-08	2.76457341319273e-06
Merged-chr8-115487949-2	chr8	115487449	115488449	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	218945.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.94383181906827	3.95402256935254	3.95934001251671	3.82954379286894	3.9505660783205	3.87923450509911	-0.18964105764582	0.705371272523543	0.922756484933722
Merged-chr7-101904962-3	chr7	101904406	101905406	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-931.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	7.47378071913948	7.80633001201236	7.38230907100769	7.53051094900083	7.69438534803595	7.37212592270297	-0.0416535786565301	0.869133672677706	0.969772902205443
Merged-chr9-100507756-4	chr9	100507254	100508254	+	933.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	-898.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	5.84671004413421	5.77632658685753	6.10284040994265	5.89103470695509	5.954590492459	6.24213232825229	0.215746929163465	0.489306368469117	0.829581570308046
Merged-chr7-143287463-4	chr7	143286973	143287973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	9074.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	5.0310143690426	5.00438083418422	5.06789721120469	5.14642161198197	5.29938286004513	5.26389723485022	0.430812470030398	0.225652644634477	0.620676402041606
Merged-chr1-58770327-4	chr1	58769836	58770836	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25038.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	3.92248504884139	4.14320471085809	4.24012955702692	3.9269143423785	4.16248839221496	4.34867359541925	0.138141004245381	0.782071694168753	0.946388527339532
Merged-chr2-90749850-4	chr2	90749365	90750365	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	ORR1B1|LTR|ERVL-MaLR	4495.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	5.18265361512812	5.31304336989327	5.25136436942137	5.10949748266061	5.22907135739419	5.62395538135512	0.15458847502531	0.674079241147705	0.911832513842353
Merged-chr10-60246714-4	chr10	60246200	60247200	+	892.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27440.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	2.91202805876687	2.80570141994278	2.92234001730721	2.93674100381768	3.00380317187819	2.99487883340251	0.482885360721195	0.479273526547615	0.824158708708232
Merged-chr8-22060619-4	chr8	22060122	22061122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	-99.0	NR_040650	207958.0	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding	5.09447993146899	5.21289999585519	4.84542660155309	4.96415771407297	4.67691116160148	4.47631566810142	-0.75076491695613	0.0732041821193036	0.355560261955779
Merged-chr16-22439812-4	chr16	22439312	22440312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023794)	promoter-TSS (NM_023794)	-242.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	6.91203407425902	6.85368083057103	6.872760031531	6.98872154170508	7.16089078067986	6.973674140856	0.259931099835627	0.285315876351729	0.68286396469164
Merged-chr1-172346269-3	chr1	172345692	172346692	+	844.142883	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	4982.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	5.61576802408893	5.91938097745911	6.0015311614502	5.7537608861039	5.9527239177707	5.80284088632403	-0.0089349406135081	0.977595569166488	0.994887548257726
Merged-chr4-95054703-4	chr4	95054188	95055188	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2466.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.99052831943198	5.03885578360985	5.52437993979935	5.29700187584802	5.30199982474989	5.68607696361515	0.474900996014159	0.219853345250288	0.61423936831415
Merged-chr4-129495918-4	chr4	129495427	129496427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4737.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	6.3819871043323	6.24065144674875	6.56519067509983	5.85745182954535	6.3965054594995	6.54276875954638	-0.166167725616833	0.60608178626022	0.883852453137866
Merged-chr9-54501929-4	chr9	54501450	54502450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172771)	promoter-TSS (NM_172771)	-324.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	6.92529446443	6.51489992032052	6.32757592219421	6.2332656366052	5.98271034491244	6.0855351414027	-0.855456470603165	0.00551346948131857	0.0656540161011733
Merged-chr10-68140988-4	chr10	68140483	68141483	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	137743.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.49340100695347	5.4201344892182	5.3797239258949	5.33211357804866	4.89439045371606	5.25635470939617	-0.540278019167116	0.13777301311244	0.49616173447565
Merged-chr2-66215619-2	chr2	66215119	66216119	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 19 of 28)	intron (NM_001047604, intron 19 of 28)	40998.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	3.06030280675546	3.20747898886993	2.92324050036292	3.32023242902386	3.13657827565053	3.3565946417525	0.829088530599533	0.216085897545065	0.609549967011312
Merged-chr2-166907126-4	chr2	166906630	166907630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	1034.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	7.75771238124755	8.03791404638197	7.36798832801635	7.48880210533711	7.89243882495915	7.44769622856257	-0.180815197254623	0.522844741152788	0.847816682032996
Merged-chr10-115385671-4	chr10	115385159	115386159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033261, exon 1 of 35)	exon (NM_001033261, exon 1 of 35)	700.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	8.49925066648426	8.78749112556626	8.48873308754652	8.35973285449324	8.54755820798394	8.68982134365674	-0.0904869627697697	0.686334770625074	0.91669877499987
Merged-chr8-40926655-2	chr8	40926148	40927148	+	718.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	415.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	3.387950185033	3.52122557791354	3.61180316769393	3.90339823359942	4.06520638701332	3.89190782923852	1.54389990610766	0.00503440732721957	0.0615129170166353
Merged-chr6-42692279-4	chr6	42691782	42692782	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355769, intron 1 of 8)	intron (NM_001355769, intron 1 of 8)	818.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	4.8347099968675	4.71469079626048	4.53503020001381	4.04925131353563	4.05142176374196	4.09209402196963	-1.71220476445473	0.000196455604089933	0.004940065852256
Merged-chr11-79519537-2	chr11	79519037	79520037	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	4225.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	7.21457022195134	7.4597420254429	6.99767353133819	7.15452629112044	7.78026293832509	7.66675171584298	0.469944250144343	0.100585866760349	0.423067724884757
Merged-chr16-10952443-2	chr16	10951943	10952943	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37646.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	2.93460357769514	3.12338773929119	3.42421464567004	3.10213232966629	3.08432721808303	3.54302528664976	0.342388298861873	0.622644010176558	0.891229663503253
Merged-chr11-83224391-4	chr11	83223881	83224881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015519, intron 2 of 3)	intron (NR_015519, intron 2 of 3)	805.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	8.15636870085736	8.51358604907953	7.80076616677149	8.06737281573555	8.35576241252494	7.89148171288664	-0.102133462155548	0.711537121096174	0.924682650905392
Merged-chr15-63932895-3	chr15	63932388	63933388	+	842.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 11 of 11)	intron (NM_001360037, intron 11 of 11)	18427.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	2.83446584689423	2.98416860276184	2.87408634100403	2.84636625636236	2.68172587592035	3.00599149800318	-0.276811291213615	0.700457323695722	0.920919335036368
Merged-chr10-52381278-2	chr10	52380778	52381778	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	846.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	5.32346464276003	5.24578717019069	5.16067092401169	5.24265595048811	4.8978273476364	4.85717872827098	-0.489440786379004	0.193294153182913	0.58042547704774
Merged-chr5-8996301-5	chr5	8995791	8996791	+	673.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023733, intron 2 of 17)	intron (NM_023733, intron 2 of 17)	855.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	5.03233857141148	5.2680008398231	4.87257966572447	4.70891695612295	5.15603673293403	4.50529656641447	-0.509716328068681	0.251633076472247	0.649115979262858
Merged-chr11-60699705-4	chr11	60699206	60700206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	16.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	6.07397350234161	5.90040358046268	6.36166518310888	6.15661266046915	5.61466885757112	5.69605068568035	-0.472256393603973	0.168379453333698	0.544915441885131
Merged-chr4-136020819-4	chr4	136020306	136021306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	843.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	7.21470895146623	7.57313206981228	7.22870929393423	7.27007874282746	7.56920668557014	7.32133717577336	0.0647199597523671	0.799987120516443	0.952400567323345
Merged-chr2-132212414-3	chr2	132211889	132212889	+	901.4523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35399.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	2.97038717215586	2.89137623556423	3.06895766988414	2.96479449306903	2.80820886699026	3.08365268155263	-0.116823695231274	0.865348438016778	0.968641478520565
Merged-chr2-131491906-4	chr2	131491414	131492414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177836)	promoter-TSS (NM_001177836)	52.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	6.51837861285115	6.35449911339475	6.5864456649147	6.62834440875037	6.31728047583271	5.89215399156108	-0.263932862962419	0.406693750310086	0.78101222717166
Merged-chr4-128798104-2	chr4	128797604	128798604	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	8008.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.14490258841392	3.13766556811792	3.07197849432009	2.93225250700669	2.74358257781441	3.20088744798967	-0.71456842817859	0.313651034459123	0.708132564679568
Merged-chr17-31905955-4	chr17	31905468	31906468	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50164.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	3.85953134777601	3.49272741842758	4.09038463151528	3.79360700563626	3.09395450497398	3.34588744940614	-1.32017350111172	0.0570795663599803	0.30808605851476
Merged-chr17-35380340-4	chr17	35379923	35380923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001143689, exon 3 of 6)	exon (NM_001143689, exon 3 of 6)	806.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	7.34183094904074	7.34711765456855	6.79095367776636	6.88221146102033	7.39511118855023	6.89708191224045	-0.154225108180949	0.609617469458636	0.885300284460167
Merged-chr2-28793126-3	chr2	28792640	28793640	+	896.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033874, intron 11 of 12)	RLTR34C_MM|LTR|ERVK	47220.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	2.17691852460863	2.06927140585996	2.37887199629719	1.97913907223678	1.92912379279095	2.32940687700061	-0.900733410240719	0.355497276215496	1
Merged-chr2-84788490-4	chr2	84787975	84788975	+	957.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10353.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	3.471659380069	3.4960261859333	3.57688977507633	3.84469651745295	3.8444979123388	3.41678668131891	0.736503861662308	0.205512007819395	0.596118076644922
Merged-chr9-70651135-3	chr9	70650621	70651621	+	928.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	RMER5|LTR|ERV1	6053.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	6.73620022495315	6.97232716512433	6.47565126249405	6.81039906236497	6.96216635330172	6.53557189765908	0.0574936850438762	0.842084389922333	0.963002495523594
Merged-chr8-120436911-4	chr8	120436426	120437426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51940.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	7.0572881455701	7.0954056373088	6.77448890455481	7.28809087255447	7.3754103185531	6.80081581317223	0.300635963618677	0.283224823508691	0.681173833410735
Merged-chr17-64201832-4	chr17	64201327	64202327	+	906.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130056.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	2.60425259303385	2.8004991513181	2.82222121546462	2.53466306673826	2.45975934305872	2.77642844831694	-0.859532173215433	0.274132594087475	0.671633734433502
Merged-chr9-118667129-2	chr9	118666629	118667629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-44563.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.6192781629319	7.76164279616273	7.60084245222113	7.71213446891176	8.06191270317472	7.50672468926743	0.182965119340412	0.46852679768274	0.818673566064062
Merged-chr11-54998453-4	chr11	54997924	54998924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 13 of 24)	intron (NR_138556, intron 13 of 24)	35047.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	3.86409330531094	3.32274790081878	3.62627046056846	3.78009337513697	3.55260549812195	3.47333855700658	-0.0539676659877389	0.929513934490321	0.984181679323649
Merged-chr17-8856628-4	chr17	8856126	8857126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	6641.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.44779398374275	4.58409809453086	4.42368045022376	4.8281117129155	4.65664582083231	4.66263980108779	0.544858977258485	0.19149452909327	0.578091345710453
Merged-chr19-41333114-4	chr19	41332609	41333609	+	942.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	51961.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.63241399519656	7.73409955370405	7.52752670356866	8.01324381212585	8.02777726750879	7.96809508734436	0.523702371221845	0.0154140352997531	0.135206730889928
Merged-chr7-99089531-2	chr7	99089031	99090031	+	642.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51613.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.0437877330345	5.68236121531823	5.79298785617907	5.64337407175662	5.77525059298685	5.80416996806765	-0.197380698739712	0.535424516070724	0.853546325121679
Merged-chr3-21937923-2	chr3	21937423	21938423	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138729.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.08628089810653	6.07274932976347	5.93002190649819	5.92561747405859	6.1747946935005	5.67225688503183	-0.136346726157119	0.66666616227789	0.908304264324382
Merged-chr11-58324157-2	chr11	58323657	58324657	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	-792.0	NR_028331	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	5.4135592595154	5.85928215028893	5.86834673126707	5.44219583470278	5.53297258853297	5.26103147991211	-0.564060678577434	0.110383806533835	0.443967005975873
Merged-chr8-14887211-1	chr8	14886711	14887711	+	562.0	f1_balb.idr	Intergenic	Intergenic	-1325.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.97365208375886	2.80155388043981	2.95489947563763	3.13012137297319	2.86585289495535	3.08697795465312	0.555132003361616	0.422975987484248	0.791716965100763
Merged-chr8-83109966-4	chr8	83109474	83110474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55378.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.36921102255544	5.39666226803183	5.19049087523728	5.29051956068375	5.13184978105946	5.38167446515252	-0.132674929042269	0.704862177841851	0.922564171800367
Merged-chr19-41265817-4	chr19	41265295	41266295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	4.12398924978479	3.50232671883929	3.6090024750509	3.80660638604233	3.91550860098727	4.384947275143	0.822696233213739	0.178357015572134	0.559436465309337
Merged-chr6-97447193-4	chr6	97446683	97447683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12103.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.7624128452961	6.76212724024453	6.96040876894238	6.84564340285176	7.0668885467197	6.99157985045528	0.229798534539906	0.360425646153019	0.74665879512773
Merged-chr7-132662697-2	chr7	132662197	132663197	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	RMER19B|LTR|ERVK	52054.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	3.30389650588349	3.53487779968982	3.52076784282051	3.44587303254277	2.9856693954821	3.19740746141723	-0.933384794208621	0.158008829479462	0.529527616804567
Merged-chr3-79126860-3	chr3	79126356	79127356	+	701.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	18031.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.46514843426821	4.23336462025283	4.37701200688161	4.99821954907368	5.15421884993365	5.40053034131579	1.9107765616713	6.01719737975667e-06	0.000259284805579903
Merged-chr18-46313317-4	chr18	46312828	46313828	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	3.27366942896769	3.21375609807329	3.23939404660633	3.08663828855776	3.04668674576218	3.19696734883146	-0.586479311645099	0.355954421361841	0.742814824384323
Merged-chr3-88176766-2	chr3	88176266	88177266	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	B3A|SINE|B2	1019.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	6.98265880276043	7.11693888034343	6.77640909638165	7.07704451981321	7.26007953378776	6.70232446071147	0.11088732349721	0.691430385822408	0.918316672681739
Merged-chr9-90233969-4	chr9	90233464	90234464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36805.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.09145912581522	6.76037623047158	7.02908465832725	7.16778520456632	7.12272568043282	6.90683099521721	0.168480694834327	0.51292360997006	0.842200405288277
Merged-chr2-48930492-4	chr2	48929990	48930990	+	655.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 6 of 13)	intron (NR_149356, intron 6 of 13)	18777.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	3.9059209850103	4.04861496767304	3.89871197460058	3.97065218065098	3.81365320302578	4.20099149569192	0.115028886840966	0.822579267595981	0.958132813961117
Merged-chr11-70038627-2	chr11	70038127	70039127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15497.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	5.5727366410095	5.53012470843009	5.59605881191655	5.91124159469093	6.34047781057904	5.68806362581998	0.825790147173124	0.0153067180107602	0.134506430693772
Merged-chr10-127634677-4	chr10	127634181	127635181	+	890.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8305.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	6.86272058891936	6.33094754317746	6.88132031166092	6.58685658355457	6.56907263546398	6.48264391236603	-0.256696168060082	0.381460446519707	0.76312705813648
Merged-chr3-10351424-4	chr3	10350908	10351908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331015)	promoter-TSS (NM_001331015)	-91.0	NM_001331014	66361.0	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	5.14169048299682	5.12474210144479	4.93156581329086	4.89929189199865	4.87730869702885	5.1688983370707	-0.210713079996736	0.577820616740734	0.87219514592351
Merged-chr1-127776247-3	chr1	127775741	127776741	+	851.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	2077.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	5.68299306784515	5.79052179563402	5.70884528403919	6.31452220933129	6.18740699267735	6.35201107380697	0.954324435432569	0.00110002660324451	0.0193880562598537
Merged-chr5-113987005-2	chr5	113986505	113987505	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	6752.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	3.60852247978156	3.66905439184564	3.78886036734207	3.66507908862715	3.47027907108366	3.90485112680224	-0.0172212122392366	0.975643480800052	0.994540154302743
Merged-chr8-111643963-4	chr8	111643487	111644487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	544.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	8.15668633316803	8.46441469702461	7.95893023087499	8.23649468066447	8.30809000862973	7.99927980813284	-0.0345209145523908	0.8875080988279	0.973836995667151
Merged-chr13-86046776-4	chr13	86046210	86047210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007749)	promoter-TSS (NM_007749)	85.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	6.87022601698156	7.05507669905182	7.30155511444891	6.9402563369043	7.11807493989403	7.10596297688864	-0.0339374557196443	0.895452435351027	0.975665889379756
Merged-chr17-64332162-4	chr17	64331653	64332653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144859)	promoter-TSS (NM_144859)	-270.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	6.72285445028221	7.0583394742376	6.79051049099098	6.80445122469596	6.9842726486951	6.80300557915058	0.00241457871748366	0.992654260618405	0.998523796268552
Merged-chr2-59239587-2	chr2	59239087	59240087	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	78737.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.74984054887167	6.81857672071349	6.74615044195541	6.83772452686672	7.08912039890802	6.70825129959645	0.195519343445304	0.453365936746011	0.809761744660326
Merged-chr15-59599058-4	chr15	59598559	59599559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-49595.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.72538485272394	5.79735059877559	5.14375074782824	5.66445746132693	5.64290919188511	5.24779686855839	-0.111190130280448	0.771100998414614	0.943576844936255
Merged-chr19-7235028-4	chr19	7234515	7235515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027643, intron 2 of 7)	intron (NM_027643, intron 2 of 7)	6207.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	3.57478123890236	3.57874508991985	3.75773540705958	3.58302179145573	3.33703278647981	3.28150504870316	-0.829063446587289	0.164376298526968	0.538841864548396
Merged-chr10-19547033-4	chr10	19546511	19547511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44938.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.37693269592367	6.24308085383572	6.19379116040732	6.19630495381493	6.29792983141611	6.005724929284	-0.15802200312161	0.58107459233309	0.873228285171611
Merged-chr8-46791979-5	chr8	46791476	46792476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	52231.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.47744814816964	6.1533227674231	6.51364730318386	6.37777161048929	6.78898665516749	6.60660443163443	0.357479338407457	0.221097505834309	0.615621501204726
Merged-chr5-122899473-7	chr5	122898957	122899957	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	893.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	6.75706617782755	6.3383074044934	6.26613135882622	6.3938186896822	6.38914510356032	6.4627381424157	-0.110550584804443	0.705147171771762	0.92270290989203
Merged-chr4-6369938-4	chr4	6369436	6370436	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4256.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.10252126378624	7.16177216684726	7.22580558021086	7.10091802311015	7.31339529226029	6.83973576552248	-0.0755842628562237	0.769170115159156	0.943037219004274
Merged-chr5-23432945-4	chr5	23432444	23433444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	1409.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	8.96651462427875	9.27038952175608	8.59211492426441	8.73464217084145	9.0715745900235	8.54369162098128	-0.233823103618552	0.382656403791414	0.764118986456982
Merged-chr5-115559878-4	chr5	115559328	115560328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007475, exon 2 of 7)	5' UTR (NM_007475, exon 2 of 7)	361.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	8.03677994334571	7.89776432998504	7.94064083070496	7.90275176371035	7.85893572058049	7.82129432025901	-0.139783968349486	0.508551467363745	0.839818423824339
Merged-chr2-16490859-2	chr2	16490359	16491359	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	134555.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.94396058376876	4.00595195485175	3.94129145561615	3.78780996141508	4.15462097648285	4.36594456386161	0.448666223900485	0.387799104934995	0.767721672469137
Merged-chr9-48495339-4	chr9	48494835	48495835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326356)	promoter-TSS (NM_001326356)	-5.0	NR_136937	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	9.38744050722725	9.97207046082447	9.36011059633219	9.26023849161992	9.54512796908798	9.1695680825007	-0.367688089165053	0.151289384043728	0.518599615535575
Merged-chr9-47582865-2	chr9	47582365	47583365	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	52513.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.17907490693431	3.52719719467129	3.76710815079068	3.25074469277315	2.87449662410938	3.44480653857497	-1.17329050310746	0.103016006019098	0.427949767396425
Merged-chr11-69919882-4	chr11	69919361	69920361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166593, intron 1 of 6)	intron (NM_001166593, intron 1 of 6)	769.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	7.25831728539157	7.28834944848572	7.40565418390365	7.27995865288436	7.67374882144892	7.45237189253015	0.249403268225991	0.306088337954612	0.702128202694144
Merged-chr5-102055872-8	chr5	102055393	102056393	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	14028.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.4940931591034	7.35865745909456	7.3443917725268	7.51425948045315	7.89863147685157	7.56908591418163	0.403741129722324	0.0962792486781982	0.413664207546446
Merged-chr19-41334714-4	chr19	41334199	41335199	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	50371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.33304358069875	7.31540492137607	7.3562672594982	7.59301458273427	7.83631488336731	7.36882667733131	0.424256035366927	0.082446646910477	0.379710001446116
Merged-chr4-126153063-4	chr4	126152569	126153569	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	5066.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	5.24612586216849	5.05274764292296	5.14145571201539	5.06904146916497	5.51491694476667	5.2059904590979	0.282997874072873	0.447835678228424	0.806781204759137
Merged-chr5-5334142-4	chr5	5333646	5334646	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	ORR1D2|LTR|ERVL-MaLR	46105.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.84034879390097	3.80343106986397	4.28829272453584	4.37326236729635	4.40114151570836	4.08092507306518	0.891388155795825	0.0832395991541842	0.38173504003645
Merged-chr1-74386329-2	chr1	74385829	74386829	+	923.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013612)	TTS (NM_013612)	-5280.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	6.5835676191363	6.25771511145997	6.65874480823065	6.65257284486009	6.34986233830145	6.63813252730268	0.0687323974361002	0.811465295926864	0.955303137357202
Merged-chr9-77737730-6	chr9	77737368	77738368	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-16667.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	7.1808259213569	7.44127599204634	7.37246453185116	6.60657575076359	6.46321426922665	6.61269322207371	-1.19655723379006	1.89009063556488e-06	9.45704519567545e-05
Merged-chr14-47349333-1	chr14	47348833	47349833	+	708.0	f1_balb.idr	Intergenic	B3|SINE|B2	-24527.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.95492558731215	5.00426491045532	5.10657797267969	4.6458517464779	4.80929032397579	4.65814865103582	-0.68271697947024	0.0808107033180191	0.376110135456188
Merged-chr11-62810585-4	chr11	62810080	62811080	+	978.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9673.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	4.08848331416526	4.19893168502676	4.2369994752674	4.14278362817397	4.13179472754461	4.30396374608586	0.0442332681478113	0.92447254646625	0.982960139621551
Merged-chr18-65668985-2	chr18	65668407	65669407	+	919.5	f0_balb.idr|f1_balb.idr	intron (NM_001361052, intron 6 of 8)	ID4|SINE|ID	-29361.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.73812421624006	3.91450960780586	3.65667964549241	3.13172463717053	2.91046811156949	3.27839523184017	-2.98752875267576	3.13098023794623e-05	0.00106815335645359
Merged-chr5-99329207-2	chr5	99328707	99329707	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-76280.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.72266844967587	3.69383303233547	3.61719099710921	3.52237433916454	3.41195657163856	3.58040710226193	-0.643949276312029	0.250456647786251	0.647808416195162
Merged-chr1-23382199-3	chr1	23381678	23382678	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	997.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	5.69693193506229	5.66745224832386	5.4457006083476	5.26171401579228	5.67520158038173	5.80604572975784	-0.0311284295363675	0.929154593184949	0.983987942057929
Merged-chr1-51938579-4	chr1	51938087	51939087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22609.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	5.3343688361284	5.20768309852431	5.60720368624838	4.82373134549035	4.95821069900949	4.90791683711927	-1.0056276534632	0.00764261696223442	0.0832885278864512
Merged-chr19-5494085-2	chr19	5493585	5494585	+	803.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007687)	TTS (NM_007687)	3630.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	2.47738630882097	2.47599359047141	2.5428892201957	2.54163513498623	2.43139405256645	2.85635366058967	0.678241946891349	0.39730392541387	1
Merged-chr3-79794349-4	chr3	79793827	79794827	+	682.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	48335.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	3.9644808779796	3.91699497525294	3.94061960402871	4.21705362197664	4.18409768446647	4.41670181801921	0.94401915995092	0.0500589595707974	0.284909740737516
Merged-chr5-123372341-3	chr5	123371843	123372843	+	894.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-22455.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.56052070435139	5.15181455021616	5.33272379346837	5.72376001619612	5.87235118876166	6.12410266067167	1.01655212507193	0.00335949228330121	0.0457586854404625
Merged-chr13-30545364-4	chr13	30544871	30545871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025710)	promoter-TSS (NM_025710)	-55.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	7.71954594304962	8.11360013114056	7.76712841572269	7.78224748174358	7.76612651494725	7.87321601978221	-0.111871390838651	0.634507703045552	0.896350313439852
Merged-chr12-100169419-4	chr12	100168903	100169903	+	867.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9750.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	5.69038104490038	5.53789990522364	5.33079221865721	5.49676882518019	5.6903102642411	5.57794827905289	0.106733084902967	0.749652486267423	0.93745630986217
Merged-chr4-129035276-4	chr4	129034785	129035785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-22986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.03516786359068	6.86638736357895	6.75939382436914	7.06040995161933	7.15115290443109	7.02307941125541	0.281554468421496	0.255698176594336	0.65274225734197
Merged-chr13-99100674-4	chr13	99100157	99101157	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12736.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	4.30526975399235	4.14438621345589	4.06347325164486	3.96357129714462	3.93232818446166	3.98433003387612	-0.647867632918081	0.183568775809562	0.566825684946619
Merged-chr2-152737441-5	chr2	152736911	152737911	+	921.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010495)	TTS (NM_010495)	1160.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.48082590501651	6.41391030212221	6.22921600349404	6.29323841231484	6.47950358731223	6.48316249831876	0.0571780117121744	0.835341932941478	0.961677041883234
Merged-chr1-156559906-2	chr1	156559406	156560406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1119.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	7.02662303939282	7.19146976208083	6.90110712335774	7.91979911663588	8.27988296333906	7.67150779441223	1.3685074028405	2.95549268441176e-07	1.85385887530879e-05
Merged-chr5-102066900-3	chr5	102066288	102067288	+	750.518494	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	3133.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.03681746747254	6.97270785287627	6.89929858908637	7.30311456635093	7.50119192780479	7.18680418121029	0.556748246486399	0.022559850091484	0.174870048959828
Merged-chr3-50406125-4	chr3	50405638	50406638	+	961.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	37475.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	3.67010941282938	3.48181419134391	3.75017189522638	3.24134491745745	3.1794003196114	3.34995549713877	-1.49264990310574	0.0148420765330047	0.131618832373256
Merged-chr17-73971538-4	chr17	73971051	73972051	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21355.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.25952836088433	6.66406331897758	6.51182720704486	6.52432853418161	6.67815966613933	6.76499227218798	0.266306614389309	0.340797371722585	0.73051336251978
Merged-chr1-182125204-4	chr1	182124710	182125710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012058, intron 1 of 2)	CpG	473.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	7.83940648166224	7.88025311801865	7.75276233972512	7.60173216135694	7.69989873420449	7.50791573534335	-0.313072172985897	0.154509553136135	0.523836159179075
Merged-chr8-22140944-2	chr8	22140411	22141411	+	789.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	RLTR44A|LTR|ERVK	-15844.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	3.32640430198966	3.29858187711182	3.04914912804826	2.76035722113925	2.69132717655551	2.93742743877968	-2.2865670475134	0.00255046135810612	0.0372674227950698
Merged-chr8-125461770-4	chr8	125461274	125462274	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31059.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.8811909544163	4.93575964071029	4.6431957084619	5.83055243913954	6.06394111942829	6.00059532419921	2.20555770812368	1.67688408327198e-09	1.77519301273403e-07
Merged-chr7-128059303-4	chr7	128058803	128059803	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3337.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.46846115383509	5.36444997793334	5.3289024540861	5.12866657224219	5.31054902476306	5.61770087016491	-0.0653005908333542	0.854542879544467	0.965987623019113
Merged-chr17-43077773-4	chr17	43077259	43078259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	61204.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.50666233218229	7.50695315353107	7.07553611719529	6.44150813949789	6.38043039568603	6.47386010457136	-1.47767166547294	2.30367188808591e-08	1.92840976321783e-06
Merged-chr2-102878220-4	chr2	102877711	102878711	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23454.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.09463963101125	5.55333459708863	6.22335102663109	5.84512876667408	5.98558604047824	6.14515481033227	0.0227872811703106	0.946927245156121	0.988007649185823
Merged-chr2-170328750-4	chr2	170328273	170329273	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27588.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.19452158956266	5.67092072139089	5.96996366131526	6.18042365511948	6.26521691980104	6.41747449449482	0.549603390290955	0.0805129163682915	0.375501302907505
Merged-chr15-97786834-4	chr15	97786325	97787325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	2460.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	8.00626067622295	8.14279942703561	7.92556479196169	7.73546145153346	8.01019354839237	7.63517922943772	-0.312084541126153	0.181578566291927	0.563992285789639
Merged-chr12-79843304-2	chr12	79842804	79843804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81429.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	2.72344803656311	2.85876952003725	2.91303489870948	2.62069369274147	2.54011723583517	2.98492639664586	-0.566910107714516	0.463035259008139	0.815604460584161
Merged-chr2-84592483-2	chr2	84591915	84592915	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57065.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.45698383185344	4.13786468485784	3.94912243238676	4.13055428748343	4.10764707242012	3.91268243865586	-0.4171161115416	0.414838758405571	0.786052044028208
Merged-chr10-59283378-4	chr10	59282873	59283873	+	915.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39923.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.14324574202371	3.34811154964711	3.41291198220909	3.32663476277114	3.29605211848405	3.42967068101773	0.181468380492342	0.767092641170475	0.942573703853445
Merged-chr15-50695728-4	chr15	50695222	50696222	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	193327.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.82750478347875	4.62832263789562	5.23753675875267	4.3600650895776	4.42696852832771	4.42817004126567	-1.2043560099521	0.00725981003620971	0.0802543209104474
Merged-chr5-143047907-2	chr5	143047407	143048407	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	65113.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.79565908096437	5.7619731179787	5.86685485231281	5.54671384943822	5.54430079787256	5.95045132795283	-0.227006129867667	0.484657755487002	0.826994448591038
Merged-chr11-108221750-2	chr11	108221250	108222250	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	122138.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.16199414274978	4.76433883150366	4.86216362656663	4.68645087397436	4.53418474057821	4.6957097003614	-0.709074126234681	0.0848313527853961	0.385718426369794
Merged-chr17-81636965-4	chr17	81636468	81637468	+	935.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	101419.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.16024201898082	4.80492323237395	4.96255148619369	5.07083837000294	4.80125603370458	4.91814359130523	-0.117208672808851	0.765433170615954	0.942148336413151
Merged-chr8-46830773-2	chr8	46830273	46831273	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	91028.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	2.71821522211174	2.83500869794003	3.06093702476111	2.59689231576596	2.59826656113139	3.07777646014024	-0.511351581709971	0.515811991187356	0.843966720312586
Merged-chr15-97964687-4	chr15	97964154	97965154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201359, intron 1 of 7)	intron (NM_201359, intron 1 of 7)	425.0	NM_001252153	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	7.12526185393779	7.02283718715922	7.24101856689778	6.8281346260409	6.85031746277945	6.81741094555002	-0.450417139260294	0.0640350323835121	0.329839480906727
Merged-chr3-144123648-4	chr3	144123184	144124184	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78648.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.74646974420189	5.0993344394456	5.2450519621841	5.27150361949721	5.47263551146629	5.45611665533759	0.74380436427845	0.0478019181347121	0.277042697231534
Merged-chr2-167660079-4	chr2	167659520	167660520	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	1524.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	5.82398207064098	5.89841905290977	5.9588999528919	5.89393621737092	6.03985035055063	6.0196850447171	0.168458465451209	0.56731927370369	0.867922102830153
Merged-chr11-87421977-4	chr11	87421497	87422497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	RMER15|LTR|ERVL	-5594.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.58449544426713	6.87248024205804	6.54735956467807	6.96167016913365	7.1495602371011	6.35001403210073	0.304289595865591	0.336337012350754	0.726341295709356
Merged-chr7-83878699-1	chr7	83878199	83879199	+	591.0	f1_balb.idr	Intergenic	Intergenic	5642.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.96441706142459	5.5457117702537	5.4523453235546	6.24825484215723	6.27633684728614	6.08180556126498	0.911825811310265	0.00547411264296986	0.0653089142886634
Merged-chr14-120279075-4	chr14	120278571	120279571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	3402.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.31599974351809	7.23238411311127	6.15362311772222	6.80481961586217	6.53984338816074	6.1916199691134	-0.717172883226728	0.241969045756679	0.639062070204697
Merged-chr5-140767898-4	chr5	140767411	140768411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	43784.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.52979473155636	6.33829832723784	6.64505647644561	6.37131121070855	6.16009247049631	6.21640956309511	-0.414992901600487	0.139165270848044	0.49841449045427
Merged-chr4-57951698-2	chr4	57951198	57952198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 2 of 4)	intron (NM_011660, intron 2 of 4)	4713.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.85311144206272	5.80201120960528	6.03433331548079	6.15198506370889	6.242725576204	5.66234578713308	0.285351141574524	0.382208872556244	0.763819347060188
Merged-chr6-86364602-4	chr6	86364100	86365100	+	922.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	4.04591364966691	3.9253157025087	4.24940430900971	4.2261316203508	3.9779572760352	4.04415389484115	0.040104256333203	0.935486751090614	0.985852245513165
Merged-chr17-31305074-4	chr17	31304560	31305560	+	958.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	8836.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	6.17104293301129	5.95255818919501	5.92336662393869	6.51704226323869	6.52123108507764	5.64711067627723	0.467654933292209	0.194248405905716	0.581403645992907
Merged-chr18-83828550-4	chr18	83828020	83829020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258042.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.58712209422488	5.71533402670005	5.69956118067025	5.240057192363	5.26909370795799	5.78530474326589	-0.428193762957395	0.227019170589633	0.622066543880371
Merged-chr10-81221921-2	chr10	81221421	81222421	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	8858.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	3.81667442437327	3.8341586995786	3.82322558678684	3.62875520056547	3.70287043485837	3.98741869151246	-0.165500526440879	0.756565871249005	0.939629132869937
Merged-chr1-184478185-4	chr1	184477697	184478697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79494.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.86149081187193	5.24847112405918	5.38415438953857	5.35125780563038	5.36210398751585	5.28796693925723	-0.379829690976465	0.307122822186511	0.703221678274497
Merged-chr8-126583215-3	chr8	126582690	126583690	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10246.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.91084122817936	6.64467893060736	6.50244373201584	6.43591022153731	6.28127223094265	6.48964122893147	-0.490936055855406	0.0778777207555924	0.368488976881898
Merged-chr9-21015361-4	chr9	21014888	21015888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	-552.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	7.58824993204254	7.47965276441933	7.5695843077653	7.4866190508849	7.6384118483836	7.58829400165623	0.0415715356546612	0.851441551659193	0.965220310573141
Merged-chr2-167712400-2	chr2	167711900	167712900	+	848.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21223.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.03707529395569	3.81421066618565	4.08949902172593	4.18474174880571	4.11663949644502	4.37513185082173	0.698018440987081	0.155260649116402	0.524873107662021
Merged-chr9-31198803-4	chr9	31198315	31199315	+	928.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	intron (NM_001357698, intron 1 of 17)	13033.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	5.37008911842538	5.6730267114095	5.16371105134855	5.44025112638433	5.77894922724239	5.19352426549862	0.14885903775126	0.699405463570583	0.920619136555148
Merged-chr5-121385666-4	chr5	121385191	121386191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-76.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	8.29762270942967	7.89940210802073	7.63792207017216	8.10397380295313	8.13276004432634	7.92445897275658	0.109408012975858	0.6734344156508	0.911417287047018
Merged-chr1-121314961-1	chr1	121314461	121315461	+	569.0	f0_balb.idr	intron (NM_001271532, intron 1 of 4)	intron (NM_001271532, intron 1 of 4)	12717.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	3.58572457998768	3.28941922527333	3.51768478473203	3.20130016320621	3.1691435838549	3.58744093556788	-0.554934552092093	0.382597980002657	0.764107846408276
Merged-chr2-31162250-3	chr2	31161752	31162752	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	9936.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	3.30241036340762	3.21323146590908	2.91677045769666	3.13612587551091	2.77661423415232	3.11665421173634	-0.624047186025068	0.389273020322226	0.769015431167891
Merged-chr4-155250490-1	chr4	155249990	155250990	+	786.0	f1_c57bl6.idr	non-coding (NR_033802, exon 1 of 3)	non-coding (NR_033802, exon 1 of 3)	524.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	4.98308084418802	5.15366434774422	5.55129263688452	5.29115043162539	4.96731102480087	5.33924997980016	-0.0780084408584828	0.842842146658233	0.963201849568639
Merged-chr3-107097568-4	chr3	107097086	107098086	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3981.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.74208481144073	7.03124489658791	6.88811865086223	7.35814368188943	7.64573661225339	7.06028394585594	0.742219154064264	0.00676130307246729	0.0762323178934768
Merged-chr11-119709006-1	chr11	119708506	119709506	+	740.0	f1_balb.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106101.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	4.04630175862602	4.12595290963982	3.97349991328275	4.05855962051215	3.79375419940462	4.04276153818341	-0.270191056006296	0.589773318438856	0.876999741964957
Merged-chr2-157132966-2	chr2	157132462	157133462	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	2260.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	5.35509522019518	5.49210670548725	5.6784303691094	5.96620421592928	6.11609393538472	6.00753668717061	0.959314721460814	0.00216244789123841	0.0327567748287212
Merged-chr17-24851605-4	chr17	24851101	24852101	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159626, intron 1 of 8)	intron (NM_001159626, intron 1 of 8)	934.0	NM_001159626	14651.0	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	6.87516285906642	7.05574285343742	6.72930334101825	6.35888256939536	6.71566836514064	6.47796088887028	-0.573264879820023	0.037889921113354	0.240741032070858
Merged-chr9-21134816-3	chr9	21134316	21135316	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3541.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	5.45334435385717	5.08338176775577	5.5165631836918	5.71179182460235	5.7220029252651	5.52213780482332	0.579375018306846	0.0951973892620655	0.411148363215922
Merged-chr8-120369118-4	chr8	120368628	120369628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119738.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.54750246009139	3.45664322895168	3.50488322768492	3.56415214423863	3.18345019954511	3.40989371130051	-0.423020025288205	0.485350210342665	0.827436882501367
Merged-chr9-13577879-2	chr9	13577379	13578379	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42110.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	2.55283912971959	2.67030242324425	2.93681908382321	2.4263165850598	2.3725028292329	2.66134839281742	-1.39931649867914	0.0918578146229634	0.403690568179321
Merged-chr3-109123233-5	chr3	109122725	109123725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172685)	promoter-TSS (NM_172685)	76.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	5.42163996564264	5.38040548788993	5.52102626928857	5.56758453443532	5.43471997322118	5.10034850112992	-0.0875481453111676	0.803663335141565	0.95351077179348
Merged-chr1-131526594-4	chr1	131526073	131527073	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 1 of 22)	CpG	788.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.72070465372729	6.73334635602719	7.14665276378372	6.78252030881264	6.94957057827413	7.2711478435287	0.211295023212465	0.458904541107425	0.813236440920954
Merged-chr17-31835784-2	chr17	31835284	31836284	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20020.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	2.70186483754806	2.32796589537731	2.66880919506384	2.9601038122765	2.6875143078369	2.86833944542099	1.44332131353232	0.090283170936636	0.399521481850518
Merged-chr9-121725670-2	chr9	121725170	121726170	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010918, intron 2 of 16)	intron (NM_010918, intron 2 of 16)	6489.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	4.21322511025851	4.21749476151542	4.41061543846194	4.25716029714329	4.18993782701986	4.59390903357845	0.186748403992369	0.689518050258535	0.917397716197234
Merged-chr4-133493962-4	chr4	133493483	133494483	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	4567.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	7.07473390456971	6.72439825167245	7.08918099571127	6.53496861038966	6.85836938733501	6.95485900673791	-0.272667969420379	0.326874937157796	0.719183905339082
Merged-chr12-8520723-4	chr12	8520212	8521212	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18854.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	8.14238532977621	8.54319256827754	8.33807722870978	8.40819611005636	8.77795703323998	8.26926114260409	0.218345196053455	0.380433342868427	0.762534569734688
Merged-chr6-145139998-4	chr6	145139463	145140463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-5512.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	5.5743389791744	5.45584076130128	5.37414834099041	5.32162638923751	5.34360320839737	5.31158718186628	-0.290430612810569	0.385747225436324	0.76666449726431
Merged-chr18-77937549-2	chr18	77937049	77938049	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-918.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	3.91724392696074	3.72841125004956	3.69820306441789	3.77715718793367	3.96921901671343	3.97290038184465	0.380259757503081	0.469189322477132	0.818913936718213
Merged-chr3-144562149-3	chr3	144561659	144562659	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	L1MA8|LINE|L1	8057.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	4.56898426304227	4.33287782943015	4.25091200204109	4.21885849316704	4.62454757070563	4.45552526868438	0.134433617557156	0.772175414368228	0.943680976839558
Merged-chr13-49204992-2	chr13	49204492	49205492	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 3 of 5)	intron (NM_026738, intron 3 of 5)	11034.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	6.60965487733159	6.34427253815673	6.42006438994006	6.34429468873083	6.54312458186397	6.32521354080497	-0.0797929588358293	0.773728122043917	0.944173663294033
Merged-chr7-27473521-7	chr7	27473004	27474004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-336.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	6.85425261615518	6.82379179206648	6.8372438228465	7.02930281859938	7.25627055003238	7.10178251156177	0.456191237727785	0.0607240895353709	0.319186989390975
Merged-chr10-22305943-2	chr10	22305443	22306443	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-777.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	6.37553972746915	6.6722952325228	6.29872552866654	5.18201231542242	5.33977506988894	5.45709322949705	-2.0319950704821	2.77295188105143e-10	3.3439388422975e-08
Merged-chr13-55432509-4	chr13	55431989	55432989	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-5685.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	5.08087344042379	5.01969522813617	4.94258164484611	5.29385919306059	5.03168164381502	5.27940641193249	0.375208401002489	0.307746262988844	0.703816371678414
Merged-chr19-10715645-1	chr19	10715145	10716145	+	545.0	f1_balb.idr	Intergenic	Intergenic	14877.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	2.38436985110489	2.54875335106956	2.67374905382006	2.38461062780937	2.24713770083402	2.68750722151155	-0.537660672736269	0.530126767466833	1
Merged-chr19-55827968-5	chr19	55827462	55828462	+	863.1199949999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-67359.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.48470311528167	4.1199712975532	4.25916518927992	4.01794121511248	3.78670160723236	4.23844054159312	-0.800859208981513	0.115419743873326	0.45365356864486
Merged-chr2-153225874-2	chr2	153225374	153226374	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198617)	promoter-TSS (NM_198617)	-433.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	4.52470016021567	4.37875177951667	4.46203923714584	4.24154313099352	4.21819296438524	4.5283035791189	-0.337442813206945	0.451992573202417	0.809286173636239
Merged-chr11-4803581-3	chr11	4803094	4804094	+	933.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 7 of 15)	intron (NM_010898, intron 7 of 15)	29541.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	3.77320083234935	3.6787376203686	3.72414100650464	3.54089018001346	3.70068321177037	3.98545498142908	0.0724865799694394	0.895595489274229	0.975665889379756
Merged-chr14-22101741-2	chr14	22101241	22102241	+	974.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	82029.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	3.20952646559629	3.34484078593014	3.16293996866995	3.71706356363428	3.73702150519099	3.64632928184571	1.72712517064726	0.00474837995654827	0.0591471855425851
Merged-chr4-142077584-4	chr4	142077070	142078070	+	911.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6728.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	6.87422593911084	7.2561002531803	6.87848967956558	7.55030715254829	7.608511136374	6.89071253367909	0.563092559440243	0.0614454280759007	0.321516235652091
Merged-chr5-115516806-4	chr5	115516310	115517310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10134.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	8.18472461047958	8.24733569268198	8.08490955996287	8.09515749806125	8.42252806362311	7.96924815006619	0.0123009564550996	0.957943951948193	0.990000537228272
Merged-chr13-23438680-2	chr13	23438180	23439180	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7663.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	3.83907420389006	3.86229496043562	3.95128273034872	3.82146812029655	4.10360976845239	3.87088375644578	0.199273470023824	0.698423437354131	0.920332843065367
Merged-chr11-79257889-2	chr11	79257389	79258389	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3194.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.26700081859115	3.30588439320687	3.40037166066325	3.56907162592758	3.6383056085363	3.52724993998614	0.986620050419741	0.0906231611592785	0.400540316250996
Merged-chr4-150217292-4	chr4	150216809	150217809	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16174.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	4.70929068456415	4.32307879158522	4.70750006803142	4.74184782038362	4.4459061391681	4.98269016035758	0.338133611274226	0.45547512681573	0.81093772016868
Merged-chr17-34398834-4	chr17	34398340	34399340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	20.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	5.9387077486829	6.27815370720764	6.06106127966874	7.22773384551314	7.27653570803147	6.90020982611722	1.65733888098752	4.6307046519299e-09	4.55990145180809e-07
Merged-chr11-99024259-4	chr11	99023723	99024723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-34.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	4.34125778796156	4.21611957631002	4.4934843673816	4.47379892611525	4.44982899860488	4.30062614216674	0.176911873445885	0.691988398744069	0.918541547639936
Merged-chr12-9030148-4	chr12	9029669	9030669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029321, exon 1 of 3)	exon (NM_029321, exon 1 of 3)	172.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	8.53432115490424	9.21428071776579	8.61965217424368	8.75387716701096	8.94631495836279	8.62361172628305	-0.0667021278642732	0.800976210534568	0.95274755793001
Merged-chr12-54791645-3	chr12	54791155	54792155	+	996.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026998, intron 2 of 13)	intron (NM_026998, intron 2 of 13)	4007.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	5.52863495780039	5.4132919070933	5.68333860834655	5.93520376228201	5.56987616444177	5.89216221579643	0.48454113514257	0.144665949602296	0.507498812534585
Merged-chr7-97186020-2	chr7	97185520	97186520	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	104269.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.99434363767413	3.61934712456991	3.91453496163272	3.86779469729099	3.90010385316854	4.25195638340899	0.485292242929514	0.368364094137579	0.753369535332424
Merged-chr10-86881707-4	chr10	86881227	86882227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	MTE2a|LTR|ERVL-MaLR	102722.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	7.60226341002819	7.61346266609818	7.3550559945736	7.56231133614687	7.55577024934029	7.28427714639294	-0.0800259478661933	0.737964875699175	0.933858424870961
Merged-chr8-125518514-4	chr8	125518022	125519022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-25689.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.09426996055842	4.31876002878995	4.2250140139411	4.43314826014995	4.07155547262536	4.24737980280131	0.106260498952907	0.823680940439215	0.958451755471188
Merged-chr2-144368947-4	chr2	144368478	144369478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164813)	promoter-TSS (NM_001164813)	-5.0	NM_001164813	100048644.0	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	7.71758423350309	7.60697268325898	7.78015451082646	7.62444081141003	7.44818977303448	7.5498169060767	-0.23234195214034	0.29840145955335	0.695092204767927
Merged-chr7-118279711-4	chr7	118279225	118280225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35818.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	6.02476066783815	6.22756707284938	6.43406028718743	6.44656270553071	6.42563883555757	6.45787943623404	0.351265946336617	0.214587405556495	0.607718894576251
Merged-chr4-108462463-2	chr4	108461963	108462963	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	B1_Mur4|SINE|Alu	3037.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	4.64471122877628	4.68250381489826	4.57814291713941	4.92435591751328	5.15632355061056	5.09892262133934	0.952463369387658	0.0147387475584178	0.131065694863827
Merged-chr2-128766566-1	chr2	128766066	128767066	+	548.0	f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-51737.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.8662329521691	4.19244936903894	4.37388081338894	3.85802907424103	3.95824528386522	4.23468073997007	-0.38617192675733	0.459418551723554	0.813650156404876
Merged-chr2-91065774-4	chr2	91065299	91066299	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 3 of 9)	intron (NM_001290765, intron 3 of 9)	4516.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	2.8543444915074	2.56987940147469	2.85336089013518	2.61311342919069	2.52832673937004	3.20082371245611	0.245845425262657	0.765307427741119	0.942137701159565
Merged-chr10-80939413-1	chr10	80938913	80939913	+	565.0	f0_balb.idr	Intergenic	Intergenic	9322.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.98463971668845	3.82260098130716	3.9964741452147	3.69624747416819	3.77100582998732	3.41886359288304	-0.934229794806861	0.100577143684952	0.423052419964486
Merged-chr18-34409431-4	chr18	34408934	34409934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163004)	promoter-TSS (NM_001163004)	11.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	6.03718876208588	6.23829184323263	5.53389945185803	4.9293142523301	4.56933042684906	4.89844336367006	-2.36354997634373	1.72937749588626e-09	1.82611729286426e-07
Merged-chr2-166730361-4	chr2	166729872	166730872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16540.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	8.12228368084843	7.92756865628335	7.24279629206144	7.95380279357896	8.00408173184822	7.31319205177195	-0.0350257550757861	0.914001196634765	0.980851155332372
Merged-chr14-8173151-4	chr14	8172673	8173673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-181.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	8.39966866518677	8.88288129966373	8.31200804605912	8.39124619251935	8.88701085701549	8.05337708972594	-0.0863214055725719	0.771798515402647	0.943614978016208
Merged-chr13-116949704-4	chr13	116949212	116950212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	75804.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.40405399528003	4.05547327241438	4.32483149065062	4.47584856058315	4.31338012111134	4.71076884064651	0.60232711564823	0.199067551832794	0.587480505511726
Merged-chr6-87535216-7	chr6	87534713	87535713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1954.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	8.84266045774752	8.58755490561122	8.37176043064362	8.39541671692487	8.7485514940553	8.21552147703535	-0.193259754268649	0.446674090408809	0.806100108763013
Merged-chr12-102304516-2	chr12	102304005	102305005	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	20864.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.06399197843592	3.31071349057619	2.99038157991623	3.10358906996274	2.87380515797624	3.18326206614682	-0.349568328860244	0.612289605610704	0.886694626735313
Merged-chr3-95994682-4	chr3	95994170	95995170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1169.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	7.78672749095835	8.14022963703201	7.61256328614369	8.05695081286737	8.29988399030024	7.63939087289743	0.232181651853305	0.406486091107509	0.780732530097264
Merged-chr6-122658482-4	chr6	122657998	122658998	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32074.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	7.10108969138398	7.3224862117221	6.73085474562874	7.46768378233341	7.66330948728213	7.01111229568903	0.496779464060753	0.0979469551880371	0.417291460898387
Merged-chr1-88631673-4	chr1	88631167	88632167	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70524.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	3.64055905035271	3.40561203912288	3.42183714244041	3.46434195777432	3.07020841250644	3.43784182158321	-0.631919294914083	0.32017289770526	0.71406219604544
Merged-chr9-50593161-4	chr9	50592664	50593664	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10685.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	3.56477752306091	3.5010040926416	3.63043193523283	3.40608158591279	3.66413725584743	3.48632703620982	-0.119160514598147	0.836026635293573	0.961919636459908
Merged-chr18-50126296-4	chr18	50125776	50126776	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1925.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	6.10846534250558	6.32200519329192	6.13998392814634	6.10973087178484	6.31205045744288	6.45291426906966	0.162306043910261	0.574735753004222	0.870862343796639
Merged-chr10-22148895-5	chr10	22148455	22149455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001254744, exon 1 of 2)	exon (NM_001254744, exon 1 of 2)	315.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	5.5095453312175	5.78805608325988	5.78410606541202	6.60860492678581	6.51954590558526	6.45169639173736	1.41921977901507	1.28843429955242e-06	6.78102727369754e-05
Merged-chr17-86977388-4	chr17	86976897	86977897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	HAL1ME|LINE|L1	14286.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.78733529370071	5.81814259517436	5.78477012061215	5.89807165725561	5.90361441893915	6.07930109338339	0.281424752497371	0.345960213909731	0.734428448795819
Merged-chr16-21651171-2	chr16	21650671	21651671	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	43494.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	2.73965415076489	3.23828612291171	2.92434412038219	2.84835271844608	2.78333597574338	3.05686439416283	-0.425593111075632	0.567185635852359	0.8678346148326
Merged-chr1-80785311-4	chr1	80784815	80785815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26762.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.22028715908618	5.1538535121462	5.33556283034468	5.27833176160265	5.20028375572766	5.42724384294264	0.13047411378732	0.70874486705629	0.92375127577894
Merged-chr11-3203218-8	chr11	3202695	3203695	+	830.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166549, exon 1 of 18)	5' UTR (NM_001166549, exon 1 of 18)	176.0	NM_001166549	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	6.12853124072551	6.32923275082245	6.12944007396482	6.531791631776	6.49508012880916	6.27533315022008	0.399906710546017	0.154815596183047	0.524112919134617
Merged-chr2-93461434-1	chr2	93460934	93461934	+	602.0	f1_balb.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	417.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	5.93171202713488	5.53311979206304	5.13144497704582	5.52262649131844	5.15792353688172	5.00391098435829	-0.64069945927207	0.119495514067518	0.462083733545572
Merged-chr12-99627337-3	chr12	99626829	99627829	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045288, intron 1 of 1)	intron (NR_045288, intron 1 of 1)	645.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	7.37563065820707	7.85974321401187	7.20911001315491	7.60905457434728	8.00885720977634	7.47671119046421	0.29675889365926	0.310481871842458	0.705852806512131
Merged-chr16-21595873-4	chr16	21595386	21596386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98779.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.45613230415122	6.66408048392248	6.36038957376666	5.92337945449404	5.80247624536449	5.75795114443791	-1.1414668975844	8.95499547061255e-05	0.00258714111377796
Merged-chr2-5811676-4	chr2	5811224	5812224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33310.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	6.28602804450574	6.16909801157751	6.14667477335409	5.9020883694976	5.91092614414793	5.98525804365872	-0.473969105458988	0.0973467874221169	0.416021534994747
Merged-chr10-127564192-3	chr10	127563712	127564712	+	886.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 41 of 88)	B1_Mus2|SINE|Alu	-29653.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.31730632737437	3.00917732509441	3.60527704760663	3.08748186463948	3.25976827352752	3.57739856516456	-0.0348922200232121	0.959665616841498	0.990242512723989
Merged-chr2-60892379-4	chr2	60891874	60892874	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-10936.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.27566668784178	5.08974675053103	5.49701059532285	5.78119651056303	5.77481919873288	5.69563262313763	0.892598645353906	0.00784282556196506	0.0848460403589662
Merged-chr11-64836778-2	chr11	64836279	64837279	+	762.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-142256.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	3.44971335397832	3.5472150345415	3.58255705320554	4.46663740248708	4.5813625644304	4.6858480297827	3.39759892438112	4.10800547664371e-09	4.07898472196384e-07
Merged-chr1-191183475-4	chr1	191182951	191183951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007498)	promoter-TSS (NM_007498)	-118.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	7.86825306058134	7.81138447823631	7.22744259103845	7.65267394259015	7.65500197536778	7.41605246190441	-0.135755384805745	0.615913491163846	0.888134787410948
Merged-chr5-30849944-4	chr5	30849449	30850449	+	939.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11858.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	6.57659898060822	6.80623061344623	6.64201502950902	6.49561740794266	6.73525803854109	6.58307345336386	-0.106678571493662	0.687872768294674	0.917193226920892
Merged-chr14-46912696-4	chr14	46912190	46913190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	29725.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.95990377708527	6.62471620401669	6.5662798861461	6.89561266946931	6.90587424154303	6.79157365866816	0.205066878841439	0.442437799526231	0.803210813434975
Merged-chr8-104251319-3	chr8	104250828	104251828	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037841, intron 1 of 2)	intron (NM_001037841, intron 1 of 2)	467.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	6.91656382109712	6.6101736648704	6.78639190570984	6.58343129447047	6.62142719784225	6.65732409550925	-0.246985392245376	0.344144863628795	0.732933245300436
Merged-chr2-143992266-2	chr2	143991766	143992766	+	905.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	18997.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	5.17953055762669	5.28883344637472	5.43117508328102	5.28186856728116	5.63701600110007	5.87232914603536	0.607248011423073	0.0926517964622469	0.40547891863623
Merged-chr4-149683047-4	chr4	149682555	149683555	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	MTB_Mm|LTR|ERVL-MaLR	-6966.0	NM_001164051	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	3.52027397148165	3.75380676530107	3.53654930971689	3.53511239820845	3.22782227907059	3.76149016877033	-0.327444616680648	0.593527607409329	0.878539957258253
Merged-chr14-76504410-4	chr14	76503890	76504890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009366)	promoter-TSS (NM_009366)	-120.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	5.08205110582175	5.30724823976327	4.94173549727596	4.51435380655823	4.63447225970157	4.31519293151096	-1.4067835546467	0.000997576199055457	0.0179862015971845
Merged-chr14-16242110-2	chr14	16241610	16242610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359883, exon 2 of 3)	exon (NM_001359883, exon 2 of 3)	1221.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	2.61392352626306	2.44571918284401	2.47640187322062	2.58690996566665	2.51842000835074	2.67779679349741	0.447852037026587	0.56661808478961	1
Merged-chr18-11718363-4	chr18	11717869	11718869	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 8 of 18)	intron (NM_001081223, intron 8 of 18)	61020.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	5.08015449388093	5.50819060045027	5.25143126979363	5.83294090700776	5.76798479132903	5.7793547351369	0.93232821919247	0.00657384751607871	0.0746447467409767
Merged-chr1-186932121-3	chr1	186931634	186932634	+	725.527771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-35282.0	NM_033077	110957.0	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	2.53552648546884	2.55437829521711	2.69303385046368	3.22940837291369	3.2324772448031	3.14786706021645	3.79460213338397	3.74564727455618e-05	0.00124071583766429
Merged-chr2-166728435-4	chr2	166727941	166728941	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-14609.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.10702047964547	4.68121365950577	4.61508403004002	5.66290828382657	5.43786716494199	4.90630189924998	1.13933285467583	0.00941858922783288	0.0965150212400885
Merged-chr9-100546128-5	chr9	100545595	100546595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010878)	promoter-TSS (NM_010878)	39.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	8.03317641226206	8.29011090611691	8.0424535000858	8.01355897562977	7.98206807259653	7.94896248706816	-0.210169683747221	0.33274994076908	0.723836163015701
Merged-chr4-131873473-4	chr4	131872938	131873938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020587)	promoter-TSS (NM_020587)	-201.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	8.05330031522331	8.15920175035798	7.8733623413745	8.12426488607846	7.90760467902669	7.968785007192	-0.051546929653268	0.816701948773602	0.956754861188725
Merged-chr11-55099014-6	chr11	55098512	55099512	+	778.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 1 of 3)	B1_Mm|SINE|Alu	1027.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	4.72181444546036	4.75287061867366	5.00977439146433	5.00720088136893	5.0708831356916	4.93361439260322	0.410550570706398	0.285920911509196	0.683371839054896
Merged-chr18-60762277-2	chr18	60761777	60762777	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12319.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	6.54037272553986	6.50771141842199	6.41013804013079	6.23352195083463	6.10977595894506	5.87313791638267	-0.664812118129491	0.0198678485111662	0.160688563269549
Merged-chr4-46489244-4	chr4	46488707	46489707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053179)	promoter-TSS (NM_053179)	-122.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	5.92293453545849	5.97885457678435	5.97459352481416	5.85588799192381	5.71158836965006	6.10054405128438	-0.127246961922179	0.678528454662024	0.913498554171186
Merged-chr3-138519418-4	chr3	138518929	138519929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6762.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	4.84897434161041	4.73402164886461	4.99290848441094	5.08787644250892	5.0205372033945	4.98738018913953	0.392758134481233	0.299083852021273	0.695927450710144
Merged-chr6-49073860-4	chr6	49073394	49074394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029353)	promoter-TSS (NM_029353)	99.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	7.3287040334649	7.14802393893937	7.10723518741705	7.32206522455875	7.27300543599372	7.19000174709634	0.0940673278230022	0.690813902714149	0.917985581441023
Merged-chr19-3378789-4	chr19	3378281	3379281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-10076.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	6.57798815603321	6.53484430331865	7.09772367487933	6.95207002099513	7.11574864935302	6.71056645408333	0.297251322053728	0.315333205427013	0.709692649130764
Merged-chr4-72199975-7	chr4	72199540	72200540	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285529, exon 1 of 20)	5' UTR (NM_001285529, exon 1 of 20)	853.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	7.75032541240717	7.86289234907668	7.78562443592662	7.54419401424572	7.44211785327672	7.59373410840771	-0.401667717632537	0.0665436063286099	0.336962049378711
Merged-chr1-173437736-3	chr1	173437233	173438233	+	777.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	MIRb|SINE|MIR	17129.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.32178334159705	3.57424790093118	3.3658144856347	3.51863174780587	3.40514604073438	3.70096180198174	0.411629013596785	0.490914821845021	0.830210977116388
Merged-chr2-59244547-4	chr2	59244048	59245048	+	828.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	83698.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.96516145753263	6.06054245917118	5.72828162019005	5.94396118850936	5.91433185805515	5.28241576739673	-0.30037309248316	0.401015660652324	0.777149969525772
Merged-chr2-84726794-1	chr2	84726294	84727294	+	699.0	f1_c57bl6.idr	intron (NM_133840, intron 1 of 2)	intron (NM_133840, intron 1 of 2)	474.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	5.86773801602321	6.01622252733931	5.63748530077356	6.02910822391786	6.26938889451807	5.67174920791623	0.294757097291537	0.382906076394621	0.764341334464389
Merged-chr13-94296583-3	chr13	94296088	94297088	+	763.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10757.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	6.82439151059594	7.22831178163208	6.65255437261994	6.95998905200677	7.07159618130083	6.52943308266624	-0.0762927271451597	0.802015837422436	0.953134607651061
Merged-chr8-75095813-2	chr8	75095313	75096313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	intron (NM_010442, intron 1 of 4)	2195.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.05722517634135	5.01415515864206	5.27337244271529	5.19952778814225	5.14640594449299	5.24379554112237	0.173269384914676	0.629435420636664	0.894228388402321
Merged-chr4-88550866-2	chr4	88550366	88551366	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7379.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	4.74723757566809	4.98634248527707	4.23028858990205	4.8348636980906	4.70535457876377	4.63735152729353	0.056709312075239	0.903560991902919	0.977856866194861
Merged-chr5-99251533-4	chr5	99251022	99252022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.65064240512942	8.94073769674803	8.56164523916174	8.63292278319846	9.05320798646221	8.38893739401298	-0.0024416065402347	0.992508476842643	0.998523796268552
Merged-chr1-171658678-4	chr1	171658162	171659162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5625.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	5.29187721572886	5.35702875121181	5.0918124387006	5.06119866046657	4.9067488072291	4.63731710562251	-0.778205998222273	0.0454944743590845	0.26930436162134
Merged-chr15-73060278-4	chr15	73059784	73060784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 1 of 17)	intron (NM_001164641, intron 1 of 17)	920.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	6.79794932875076	7.22774506599278	7.10476033940311	6.40212008926966	6.67298514721498	6.70541076738962	-0.708100153141218	0.0104176990545066	0.103402429947557
Merged-chr11-77361170-3	chr11	77360659	77361659	+	821.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	12879.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	5.42422368492711	5.41748928723543	5.52368681820928	5.44603611207736	5.32908109912946	5.31868763307174	-0.166767985342504	0.616286979067406	0.888323384760338
Merged-chr2-156721890-2	chr2	156721390	156722390	+	864.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	611.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	6.15596110017356	5.97487870386777	6.1948906683852	6.03089188910109	6.04301642909079	6.10911965463568	-0.0822365088422735	0.775159922278788	0.94459099355584
Merged-chr11-34048192-1	chr11	34047692	34048692	+	826.0	f0_balb.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	1264.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.72809184129251	7.93926595821523	7.86103159747244	8.08233438159693	8.0663432918205	7.8767939248213	0.242119362460318	0.270416086727889	0.667362135023556
Merged-chr5-65309093-4	chr5	65308568	65309568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 4 of 24)	MTE2b|LTR|ERVL-MaLR	26571.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	5.75290746456211	5.79880362670099	5.42900459267628	6.09307097956999	6.20577688390685	5.99171594221163	0.74171075366248	0.0187881876490003	0.155168984406751
Merged-chr1-152603033-2	chr1	152602533	152603533	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	MLT1A1|LTR|ERVL-MaLR	22184.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.69571512173684	4.48089973401221	5.11451373862255	4.91466817560856	4.75806757569118	5.26582535670496	0.46219156996008	0.297014704778375	0.693594573456833
Merged-chr6-76361631-1	chr6	76361131	76362131	+	626.0	f1_balb.idr	Intergenic	Intergenic	-880846.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	2.58262223275111	2.4743915608353	2.6825130844127	2.17246356614691	2.24148508857844	2.44878045532525	-1.99996231485894	0.0279049207052967	1
Merged-chr14-51128972-4	chr14	51128472	51129472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-65.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	4.92270415423562	5.02487681010093	5.00620048729958	5.00849313423055	5.21929799871697	5.35782453641474	0.448836950835579	0.224428584936047	0.619197866183143
Merged-chr5-125177094-3	chr5	125176573	125177573	+	577.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	2141.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.39277468704912	4.2646719125595	4.73818775579607	4.34868203655059	3.99838019095388	4.42507645784775	-0.548938171982939	0.259986218593664	0.657579648868986
Merged-chr5-129787213-4	chr5	129786642	129787642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	111.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	8.06854202253236	8.50308792180196	8.24366499807677	8.26511446028182	8.54383967798803	8.17456498671874	0.0792677592389742	0.743145495060911	0.935528839299546
Merged-chr11-6366097-4	chr11	6365588	6366588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29037.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	3.34093309258323	3.13105527063964	3.14877350835003	3.13938112696489	2.93994677181475	3.10278399871321	-0.684299352841434	0.30030062543668	0.697154579580807
Merged-chr7-80535127-4	chr7	80534567	80535567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007550)	promoter-TSS (NM_007550)	52.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	6.87081431131973	7.10202450368873	6.58575176158507	7.27874497079362	7.23604757676174	6.80050493058125	0.380322028530142	0.186661452676651	0.571348871080751
Merged-chr2-167240576-4	chr2	167240076	167241076	+	788.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-39.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	5.3241908121509	5.383470530692	5.59848499226358	6.16763912165953	5.73831428734877	5.76795153677929	0.875739763953847	0.00951746473858291	0.0971215607024782
Merged-chr6-57822261-2	chr6	57821761	57822761	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	2864.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	4.1692862137889	4.02194286356938	4.31961958067616	4.145506330207	4.28015344396647	4.50741920769599	0.394244952114231	0.406774842802924	0.781073132890231
Merged-chr7-46987761-3	chr7	46987254	46988254	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033461)	TTS (NR_033461)	11122.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	5.47712809289694	5.20596100804368	5.27053786778909	5.55176867933246	5.84237451515362	5.30190169749036	0.524096337995784	0.147368260190204	0.512227670074211
Merged-chr6-56797032-4	chr6	56796542	56797542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362209, exon 1 of 4)	5' UTR (NM_001362209, exon 1 of 4)	171.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	8.09456138180886	8.10630229325619	7.83107191712724	7.91601411045965	7.70849957061716	7.78568921491236	-0.311037428490426	0.166864411813402	0.54240433228749
Merged-chr1-86406495-4	chr1	86405993	86406993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17132.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	7.30271874778187	7.62626907679839	7.41400050601799	7.01170010058599	7.5426479452034	7.06612147789477	-0.318022237747659	0.248503198700497	0.645625695740187
Merged-chr2-122164494-4	chr2	122163995	122164995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3795.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	7.71843319495039	7.95468321707413	7.65350782395273	7.71388206672759	8.15353062150172	7.52125508232604	0.0707916640155315	0.791420213736349	0.949737938863565
Merged-chr7-59163092-3	chr7	59162596	59163596	+	886.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-65654.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	4.44601109815807	4.88702109795	4.74767810211564	4.70238801094031	4.74602844879165	4.77519238110382	0.0762264859935052	0.855672574425465	0.966244542232428
Merged-chr14-30200513-4	chr14	30200017	30201017	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	152969.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	2.99582771787494	3.09489311819919	3.04926853446389	3.05859106961109	2.86440147694595	3.44676386171266	0.398041677980882	0.570670331376283	0.869253690275099
Merged-chr6-85369629-4	chr6	85369119	85370119	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	5015.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	3.5726675146993	3.76215645320773	4.03224852474539	3.39096181482409	3.21449310392466	3.58067477203754	-1.45293855202655	0.0177186713421584	0.149079825149491
Merged-chr13-113014024-2	chr13	113013524	113014524	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20156.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	3.88364235531551	3.86124829277317	3.73876379796074	4.06996219815148	4.28743287575804	4.0215193839399	0.912009674370267	0.0722352301982774	0.353104748815549
Merged-chr2-31143354-2	chr2	31142854	31143854	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1346.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.61349630248221	4.65408294173964	4.60038578233466	4.22740434010798	4.2181309948564	4.23186745542061	-1.03185202891686	0.0181051332107278	0.151482345319079
Merged-chr13-23574376-4	chr13	23573913	23574913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	32.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	6.91007724820632	6.7353755637502	6.85212269636563	6.37929121115774	6.83182094719326	6.82366556680435	-0.214265246446076	0.438772884330246	0.800767972262215
Merged-chr1-127273147-2	chr1	127272647	127273647	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	68161.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.61392954942115	3.34971442445791	3.38857071054707	3.368166755784	3.32813777960804	3.56817255049855	-0.148930377427504	0.804084662741021	0.953557286986578
Merged-chr16-36709014-3	chr16	36708514	36709514	+	981.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 2 of 7)	intron (NM_001285788, intron 2 of 7)	15036.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	6.24186893170895	5.74764871453113	5.68651862940168	5.87597551025688	5.9549008756514	5.88137262694327	-0.0367128582425579	0.911940831301894	0.980211734893551
Merged-chr19-40631458-4	chr19	40630974	40631974	+	924.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	19108.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.09987797993709	7.28394317318923	7.31278159729658	7.03845439138938	7.55874485942724	7.3700719141733	0.166628502400824	0.524867828227189	0.848833934932934
Merged-chr5-118376633-4	chr5	118376139	118377139	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131412.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	3.56012900216149	3.37380907344096	3.41370891032597	3.45576358465875	3.32446661656768	3.25195245260815	-0.400994329275183	0.505622609357032	0.838177729332582
Merged-chr6-87038399-4	chr6	87037901	87038901	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4445.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	4.98822094639164	4.42324819266773	4.67117385408751	5.57617666869435	5.66005840057192	5.20775566848281	1.63150059239321	9.2286039727722e-05	0.00265248248485813
Merged-chr17-31038013-1	chr17	31037513	31038513	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-19681.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.50451717276736	6.28896228227808	6.32901863432641	5.93948487437774	5.78505656811585	5.43584441226191	-1.08100076813505	0.0006699653877525	0.0132382996875113
Merged-chr3-79559313-4	chr3	79558813	79559813	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	8366.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.84539275005487	5.56893789799645	5.6193677598678	5.68362038374037	5.5795431196633	5.59799123832033	-0.122898499040339	0.702303164126121	0.92186846001903
Merged-chr5-3516908-4	chr5	3516379	3517379	+	989.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 6 of 7)	intron (NM_009873, intron 6 of 7)	-26954.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.61362626586131	3.58588546724516	3.49908176498345	3.44870900175318	3.25843817612247	3.21927801944687	-0.978421993144149	0.104956849153328	0.432296282761615
Merged-chr7-141466246-4	chr7	141465749	141466749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025103, exon 10 of 10)	3' UTR (NM_001025103, exon 10 of 10)	-1113.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	5.34021713867498	5.25193537751592	5.43013538127975	4.95683272592861	5.06647330986566	5.34873414161483	-0.435251871877464	0.229869183595865	0.625574980495329
Merged-chr18-60730056-2	chr18	60729489	60730489	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	MIR3|SINE|MIR	-2423.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.30611856202006	6.62659396404287	6.83577747690985	6.54730903081348	6.5625475133005	6.37262794720448	-0.156982315143695	0.587666604881031	0.876033486335519
Merged-chr9-106370527-1	chr9	106370027	106371027	+	630.0	f1_c57bl6.idr	intron (NM_153459, intron 1 of 2)	MIRc|SINE|MIR	1895.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.06407690466752	5.42001750320666	5.28283083663313	5.50349962771547	5.3187594517163	5.46732348479651	0.320323499158102	0.364796298976985	0.750028369485675
Merged-chr9-104140523-4	chr9	104140018	104141018	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	5.09609823882233	5.08134377996649	5.58617795743521	5.19817505490184	5.2993400022704	5.15431452436328	-0.0776122875319362	0.837450496042607	0.962133986386607
Merged-chr15-8633773-4	chr15	8633255	8634255	+	901.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148938)	TTS (NM_148938)	77052.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.36042106586168	4.10163256125561	4.07316820767633	4.44538273911736	4.57100114014992	4.70745293799169	0.993036310118641	0.0311878141190806	0.213920998864105
Merged-chr17-43557315-4	chr17	43556814	43557814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11137.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	8.08917912987151	8.17388400994786	8.15113328110678	7.93066570366249	8.12766871757092	7.7348975285176	-0.267164725179244	0.236843911872116	0.63324025165927
Merged-chr6-148444867-3	chr6	148444332	148445332	+	968.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-480.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.75029450811371	4.67101548274213	4.84678418307121	4.67293289874507	4.93502618852833	4.68084356585169	0.0604933341556605	0.881116515285485	0.97262624933271
Merged-chr12-111944599-4	chr12	111944107	111945107	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-125.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	5.43762145050957	5.37650517513381	5.61430612863849	5.68730285904887	5.5699388951274	5.82663874198166	0.411305437119153	0.208852753722249	0.599958314648662
Merged-chr8-13164538-3	chr8	13164032	13165032	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	5371.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	4.39815014007072	4.56831920820378	4.54091874865697	4.75462498184576	4.33926579531758	4.48107806298505	0.0757768513241951	0.863987832805202	0.968269312109804
Merged-chr2-174415770-4	chr2	174415263	174416263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020580)	promoter-TSS (NM_020580)	-41.0	NM_020580	57314.0	Mm.271709	NM_020580	ENSMUSG00000016253	Nelfcd	2410003I03Rik|C77797|Th1|Th1l	negative elongation factor complex member C/D, Th1l	protein-coding	6.18889581746485	6.05007131575714	5.94041607343012	5.98008162010352	5.90704597219968	5.9292442885838	-0.228877108648443	0.435385217590369	0.799001636162842
Merged-chr13-102698861-2	chr13	102698361	102699361	+	808.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	5303.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.53261990507848	4.53379994990709	4.98584012592434	5.12429472785591	5.26670720800948	5.15006386326099	1.10082668748926	0.00599157958669459	0.0697074041176851
Merged-chr13-69389608-2	chr13	69389105	69390105	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	144259.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	2.59474569815255	2.52551941455302	2.75222324241035	3.11376374121927	2.81531454182472	3.00982228848877	1.95548542630487	0.0114396110572186	0.110529724179136
Merged-chr1-136126377-4	chr1	136125873	136126873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	4810.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	4.54829138711839	4.24649649859075	4.61680182298145	4.9763655780172	4.94418701226371	4.46649367633871	0.832323782632585	0.0633484915090766	0.32784558287643
Merged-chr6-114044407-2	chr6	114043907	114044907	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	3.45350396928597	3.11159375183896	3.03325776009188	3.20443352557774	3.21880739350488	3.28809326339668	0.0702350418308624	0.915327727908266	0.980959026698783
Merged-chr2-11333084-4	chr2	11332564	11333564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	7.10872433990184	7.36523507808885	6.67259888706753	6.80404860355353	6.9379817699181	6.43007977484347	-0.518151303021794	0.0934813989306279	0.407217949776011
Merged-chr5-136950460-2	chr5	136949960	136950960	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2815.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	4.80560681040193	4.67328221230767	5.22372669059744	4.8107555440847	4.92141866127921	4.74411058988275	-0.168934179346676	0.685311840216532	0.916230338877793
Merged-chr8-35678320-7	chr8	35677754	35678754	+	768.3809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-89234.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.86783690098739	4.84991143794138	4.86410471024426	4.50484682187438	4.27597026913578	4.66719533737515	-0.915779763523511	0.0293202747820383	0.205862916552514
Merged-chr1-180767697-2	chr1	180767197	180768197	+	621.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41654.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	4.99481344725574	5.34862892746203	5.68321609041745	6.18254406211059	5.82576918045889	5.66597018934928	1.02048713034493	0.00676661477845793	0.07626120580874
Merged-chr6-124811450-2	chr6	124810950	124811950	+	748.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001306050)	TTS (NM_001306050)	2532.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	3.39220184057337	3.18864438949335	3.5045834130146	3.27767696135465	3.20776646040577	3.6728390069121	0.115854663969192	0.855715755597591	0.966244542232428
Merged-chr11-36847816-2	chr11	36847316	36848316	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	96425.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.00608552391623	3.15206225568677	3.04574609170224	3.57811262695353	3.23330124610775	3.41539151629984	1.42569685804258	0.0296807333281536	0.207431081704099
Merged-chr4-101296977-4	chr4	101296492	101297492	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-31710.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.48227021261792	4.63018527782576	4.7639079899571	4.59427528610944	4.55824380216315	4.71711898355127	-0.00997488069741201	0.980879134929531	0.995623353730457
Merged-chr19-16381147-2	chr19	16380647	16381647	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 6 of 6)	intron (NM_008139, intron 6 of 6)	-54520.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	2.58391335413506	2.54512830630144	2.44106266562384	2.70514080351916	2.56371346703574	3.33484219599412	1.98073270042201	0.0225246801664097	0.174704845943943
Merged-chr8-117260332-2	chr8	117259832	117260832	+	633.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	3313.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.72101864946483	3.47089514491201	3.64069284548673	3.74389062058566	3.67406236815616	3.91050417061698	0.537975499837516	0.329817024468954	0.721504110160967
Merged-chr14-78733585-3	chr14	78733045	78734045	+	865.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-816.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	4.87773922426199	5.50334738786666	4.60565111166804	4.22837743181928	4.38841905622984	4.49552946578109	-1.61031905858744	0.000822606817533212	0.0154613661787449
Merged-chr5-110230991-4	chr5	110230476	110231476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-28.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	6.60871600931327	6.99016687515924	7.00913803521162	6.83019533626577	6.67551708258351	7.01557868381139	-0.0599986693142866	0.827487033936972	0.959467071709035
Merged-chr11-8622358-2	chr11	8621858	8622858	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42177.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.0023882304339	5.09554054345537	4.85628061837825	4.75039872003434	4.94962885524402	4.72294382420961	-0.383239096722051	0.327706025848641	0.719864911925176
Merged-chr2-84267014-3	chr2	84266534	84267534	+	839.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	158232.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.04287012756911	3.1796038558473	2.90750211087295	3.57446844871877	3.35809628004617	3.35961207913844	1.5854995597772	0.0200093796967742	0.161439694610833
Merged-chr7-34230324-4	chr7	34229800	34230800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008155)	promoter-TSS (NM_008155)	36.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	6.17150473871626	6.46702615588645	6.37601786772523	6.28590560588902	6.31629476349793	6.08352677768061	-0.171159148112331	0.55020422700318	0.860631826326949
Merged-chr6-29530959-2	chr6	29530459	29531459	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	1677.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.93044236245171	4.87854088436424	5.26633386182482	5.02719784968694	4.90914197445317	5.20865948123235	0.0438873483897313	0.909935505615008	0.979696874490038
Merged-chr9-106223241-4	chr9	106222750	106223750	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031178, intron 1 of 1)	intron (NM_031178, intron 1 of 1)	652.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	6.82650720843147	6.85065710233814	6.58111628947056	7.20576771593548	7.0565171862934	6.99992446328647	0.497912116088429	0.0497238981248649	0.283637904653031
Merged-chr11-86966787-2	chr11	86966287	86967287	+	739.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	26975.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.13164275050025	3.8036539774838	3.94581899905455	4.2280834493462	4.15642558532087	3.96488005332678	0.457224058998707	0.365308536495745	0.750427350624492
Merged-chr17-79569815-4	chr17	79569318	79570318	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45082.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	3.4246121671095	3.33830406844532	3.78170277524198	3.52763857859255	3.4466626871831	3.75530697504962	0.202486793372379	0.735700631166855	0.932822008846258
Merged-chr4-11126730-2	chr4	11126230	11127230	+	976.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151526, exon 3 of 3)	non-coding (NR_151526, exon 3 of 3)	2772.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	3.10383241733648	3.02272444480536	3.16761657110197	3.17127562244837	3.2292926710938	3.70313378468484	1.16621398849352	0.0797073814502496	0.373348406228253
Merged-chr18-31761027-4	chr18	31760530	31761530	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001242430, exon 1 of 8)	5' UTR (NM_001242430, exon 1 of 8)	414.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	5.61803822718224	5.35097857879355	5.56177993270216	5.89646122274441	5.56875968425694	5.88016433174758	0.499348156660772	0.134514594356376	0.490305342877404
Merged-chr3-132227833-4	chr3	132227334	132228334	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	142542.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.38645994277182	2.44353151272332	2.53241404929867	2.25854665506055	2.27817526721363	2.48192245467844	-0.741525736339785	0.373930257584483	1
Merged-chr2-174345915-2	chr2	174345415	174346415	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 9 of 10)	intron (NM_001077507, intron 9 of 10)	15826.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	3.31134398771726	3.35625476961826	3.39552146548693	3.03221553509899	3.0467013740871	3.66507728772164	-0.300770209448226	0.661185757151523	0.906299831450979
Merged-chr17-27976510-1	chr17	27976010	27977010	+	1000.0	f0_balb.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	67204.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.83627385218916	4.64107144889743	4.19831762445123	3.55640988424742	3.42747082742115	3.67143413898555	-3.5229699717689	1.07701717683009e-08	9.69874948589586e-07
Merged-chr1-131828748-2	chr1	131828248	131829248	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173865, intron 1 of 10)	intron (NM_173865, intron 1 of 10)	736.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	5.28386479035723	4.90513635668008	4.68900894027409	4.63829544914813	4.63904021673248	4.33998712237946	-0.998007035223297	0.0251774345184144	0.18785023064414
Merged-chr18-88924507-3	chr18	88923988	88924988	+	972.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30281.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.13817235346926	4.45256371424508	3.97883524629021	3.54630720523784	3.55594101307176	3.999842625491	-1.57008713435872	0.0055967527100094	0.066371867562564
Merged-chr10-20795965-2	chr10	20795465	20796465	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-70887.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	2.90549792073236	3.00108878729925	3.10565548187536	3.06775671304037	3.39541019898061	3.45182814879112	1.35357713170811	0.044139954305315	0.264363155390243
Merged-chr2-168231523-2	chr2	168231023	168232023	+	914.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160330, exon 1 of 1)	exon (NM_001160330, exon 1 of 1)	901.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	5.1666715999355	5.11179019279025	4.81539711936407	4.52845430107107	4.47317777249052	4.50355072712881	-1.26983466818883	0.00185497511026067	0.0291444050178569
Merged-chr11-55022748-1	chr11	55022248	55023248	+	599.0	f0_balb.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10723.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	5.10369377836657	4.26663805042685	4.03099049959725	4.43197028371615	4.25567361389071	4.31347674718198	-0.561449213075535	0.313995704700499	0.708376289358925
Merged-chr8-27022562-4	chr8	27022055	27023055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	8.29908054868777	8.44005829938859	8.08838752843779	8.3002144800707	8.53902838829634	8.09330772987928	0.0587525985691176	0.805152452014322	0.953787743121181
Merged-chr18-62192628-2	chr18	62192128	62193128	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12528.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.89095297317003	5.5681267160013	5.63305165095881	5.50996796611777	5.4929772009087	5.64102679969718	-0.30636445041886	0.349781934877203	0.737833481148361
Merged-chr4-59804955-4	chr4	59804459	59805459	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172468)	promoter-TSS (NM_172468)	-691.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	5.95063220984782	6.2421722524147	6.10530959244758	6.56326623888587	6.65115492074215	6.3746582987116	0.718127351739891	0.0117130416355606	0.112347984831323
Merged-chr9-21136104-4	chr9	21135596	21136596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4821.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	7.41055923229487	7.07478821718733	7.2196716686199	7.63375773879215	7.80995789146015	7.28931566212653	0.530982179557239	0.0431493334760257	0.260624981117389
Merged-chr5-151187168-4	chr5	151186675	151187675	+	923.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	3018.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	3.19603804300191	3.51375039196513	3.35765606130415	3.52754419552352	3.41005057523374	3.37232107068867	0.282822161349029	0.642384973682725	0.899398873915991
Merged-chr14-118706335-4	chr14	118705825	118706825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033336)	promoter-TSS (NM_001033336)	-106.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	6.32197962488486	6.42561280455105	6.25019058128961	6.26226521712383	6.06565487520577	6.20713993683869	-0.272532030267102	0.329015994394318	0.721105303873632
Merged-chr4-132747815-4	chr4	132747310	132748310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9361.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	6.94558867654966	6.87697607419963	6.92517111806501	6.75207950924245	7.18614852727008	6.56747076403424	-0.0576383255112759	0.839637791897886	0.962784121274377
Merged-chr14-66147767-4	chr14	66147277	66148277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144803, intron 5 of 6)	intron (NM_144803, intron 5 of 6)	6817.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	4.23994413445348	4.38365774826838	4.2591547601811	4.58933454290879	4.13686489059035	4.08318084859582	-0.0114544401939531	0.981185149701063	0.995687678606673
Merged-chr8-95433532-2	chr8	95433032	95434032	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	1337.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	3.13762671334123	3.53891937038025	3.33489356416282	3.4724885196837	3.20653870509474	3.5160244722765	0.191128870010219	0.764373591863248	0.941979298344481
Merged-chr11-86201264-4	chr11	86200760	86201760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130958)	promoter-TSS (NR_130958)	-67.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	6.36800427387779	6.64802597645318	6.39573824143231	6.47924899346392	6.73282141750817	6.41717404879977	0.125434548879131	0.655684270599646	0.904329136218388
Merged-chr18-69403655-3	chr18	69403150	69404150	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	57490.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.60846559596457	4.7114392019497	4.18759331874426	3.74364671849579	3.62067633255571	3.78008168175595	-2.49039517096197	3.59865993964598e-06	0.000166169420786938
Merged-chr11-69774440-2	chr11	69773940	69774940	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	8528.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	3.76335365774277	3.47956019013454	3.55859887128777	3.55612130143884	3.51926608821323	3.62931597423743	-0.150869623783421	0.790180473624653	0.949368241827272
Merged-chr2-164084196-4	chr2	164083689	164084689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	10011.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	6.95066539098906	6.9473643864025	6.92943352684496	6.88167634207768	7.0201657938862	6.81163883731058	-0.0439785641012259	0.857409789660752	0.966747388099837
Merged-chr19-32210624-4	chr19	32210133	32211133	+	939.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	380.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.31606753859684	6.52845983052849	6.20220545303117	5.34553690653248	5.13925928936955	5.21854298438799	-2.0531297744482	1.97301801215739e-10	2.45031168291928e-08
Merged-chr17-65763721-3	chr17	65763218	65764218	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	B2_Mm1a|SINE|B2	9034.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	3.65891390002305	3.67940357296219	3.90672513901928	5.08500316849111	5.36631791986219	4.90456020299687	4.04537141697371	2.8422369078293e-13	5.98726199054836e-11
Merged-chr13-113623062-4	chr13	113622485	113623485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.64071153985133	4.77556214192896	4.24536496443955	4.41800441212209	4.5451367557313	4.21452707502611	-0.433175904990036	0.358654359622079	0.74501115798572
Merged-chr14-65100147-2	chr14	65099647	65100647	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2041.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	4.79371304992255	5.06202425542421	5.31485177759694	5.31904893528568	5.14680771002699	5.73959272208636	0.706851397286548	0.0792675922458024	0.372170655509118
Merged-chr8-75066713-2	chr8	75066213	75067213	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-26905.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.03003764738841	4.79260562325249	5.20024883580169	5.28908211507537	5.20039807418937	5.29471601632942	0.525015604992061	0.156635865325527	0.527474081589966
Merged-chr2-118729336-3	chr2	118728845	118729845	+	640.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-907.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	3.87258091323891	3.95054052887344	3.97993458515203	3.80466044561507	3.89220193426274	3.79954082971652	-0.302250644877793	0.552705727202081	0.861859066495732
Merged-chr19-55837543-2	chr19	55837043	55838043	+	660.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-57778.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.69511822288339	3.755069932253	3.83283726549465	3.46162543634545	3.68235885876267	3.29521125156224	-0.898501676998303	0.135326600203883	0.49154257303863
Merged-chr11-76847057-4	chr11	76846579	76847579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007754)	promoter-TSS (NM_007754)	-71.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	5.53854992812068	5.06094690058727	5.35071887528167	5.00763972851448	4.72364336633998	5.13288767896419	-0.785493822528582	0.0465776387280003	0.273047214546953
Merged-chr11-106701873-2	chr11	106701373	106702373	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	RMER13A|LTR|ERVK	13408.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	3.69192472740417	3.57239536600904	4.07099098779022	3.6019585560853	3.39476082818793	3.56679004874583	-0.918560566245265	0.117488412768436	0.457633922368508
Merged-chr8-33654153-1	chr8	33653653	33654653	+	573.0	f0_balb.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	915.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	6.48876228401225	6.54612953809245	6.59899964950478	7.42374664964837	7.32986344703625	7.43890023638713	1.30583231025769	5.76258076325708e-08	4.36696557512837e-06
Merged-chr15-5185609-6	chr15	5185113	5186113	+	856.538879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026213)	promoter-TSS (NM_026213)	53.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	6.16920138804003	6.19006324082391	6.23943595785294	6.34350391739314	6.41926129750624	6.2995167490071	0.269592970997878	0.321309146713643	0.714837665357421
Merged-chr15-59721757-4	chr15	59721269	59722269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73115.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.51996140777916	6.44646495864014	6.7474557731593	6.32940692487814	6.43778393367668	6.65399641545235	-0.153686361433615	0.579707697149226	0.872595003519464
Merged-chr8-20517841-2	chr8	20517341	20518341	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-93027.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	3.35174322751378	3.37659353814456	3.29377343865501	2.9932425010026	2.96594834147541	3.07347501605138	-1.49952495467723	0.0225286415710218	0.174719284913932
Merged-chr15-40047400-3	chr15	40046896	40047896	+	848.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 1 of 2)	MLT1A1|LTR|ERVL-MaLR	2208.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	3.53340987484824	3.73013763672987	3.52565198640013	3.53854273539154	3.60097937803033	3.75411227888977	0.0885155223069788	0.874860341159772	0.970813891247597
Merged-chr12-79636233-1	chr12	79635733	79636733	+	542.0	f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	288500.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.77717292827028	4.48061917617086	4.63625568738851	4.36405125085832	4.35287799484036	4.62374303611454	-0.478836058834686	0.271780187510468	0.669165567962878
Merged-chr11-99040412-2	chr11	99039912	99040912	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	-832.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	3.50650568166552	3.06155187429794	3.48287043406368	3.40924743099254	3.00749243726363	3.22035649611845	-0.569597811980398	0.401803123356924	0.777753227258936
Merged-chr1-131021685-4	chr1	131021188	131022188	+	869.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 3 of 4)	intron (NM_010548, intron 3 of 4)	1843.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.1284128722167	4.18374316687973	4.12068676955542	4.64059817825966	4.42619242718131	4.24008051649384	0.811516090507806	0.0800080451708352	0.374111234761161
Merged-chr11-50213641-4	chr11	50213141	50214141	+	924.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2821.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	8.03603444801895	7.95932606099185	7.22000021550942	7.11988897325982	7.15211569008047	6.75968855543705	-1.12692067756685	0.000223470975743767	0.00547382188686705
Merged-chr16-36724359-4	chr16	36723857	36724857	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	30379.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.11834129899149	3.23780717223371	3.2368515406874	3.22372593466809	3.45230230715589	3.19147883892711	0.426558762398966	0.500344649437984	0.834978949366358
Merged-chr15-64052237-4	chr15	64051720	64052720	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	7544.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.89360368121738	4.97440294296607	5.15371032163977	5.01725784803981	4.98129159578234	5.62842544986639	0.467956409486504	0.252867657088455	0.650244514834543
Merged-chr14-103469296-2	chr14	103468801	103469801	+	755.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-44040.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	6.89535066944314	6.42080319285698	5.9726374344243	6.55501099883285	6.23412978431982	5.98344040629115	-0.344373250050305	0.341481957560772	0.730861271883589
Merged-chr17-29315877-2	chr17	29315377	29316377	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3005.0	NM_023734	74116.0	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	2.33955708818893	2.36600590561735	2.47986512339142	2.36169599921391	2.26429214634016	2.22870519297813	-0.715081692037109	0.396976010197379	1
Merged-chr17-26504538-7	chr17	26504012	26505012	+	998.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3960.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.47707865211992	7.98728033005139	7.58816693479227	6.95962731357936	7.27479381234665	7.56053510396236	-0.619218615349699	0.029097420952784	0.204837770984063
Merged-chr7-118478067-1	chr7	118477567	118478567	+	877.0	f1_balb.idr	Intergenic	Intergenic	13908.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	3.85069035258852	4.04221478888158	4.47095604511282	3.99209754827029	3.81917900541915	4.17497377845966	-0.408483285706248	0.446330355342218	0.805829266594444
Merged-chr3-27667609-3	chr3	27667100	27668100	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	42852.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	3.85617926218353	3.76111560159619	4.1399394781447	4.00782374094315	3.85580830103024	4.2492772143894	0.356711718638245	0.496723172021269	0.833276379458998
Merged-chr4-149587709-2	chr4	149587209	149588209	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	intron (NM_023051, intron 1 of 18)	1241.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	1.99139427272578	1.92270045374805	2.08388025762718	1.81773560687998	1.68904867637574	1.82127734921225	-2.20153702313412	0.0433121595223657	1
Merged-chr1-171451189-4	chr1	171450661	171451661	+	861.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	13600.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	3.59589240562253	3.50745522555642	3.69748781896414	3.88639065560353	4.15937746301139	4.24041283671769	1.62653433403407	0.00252684233302689	0.0370490743341852
Merged-chr8-122547289-2	chr8	122546789	122547789	+	686.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	4040.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	3.16534618775013	3.33834367514721	3.28677461733728	3.7451410532108	3.49786051560021	3.73949365515402	1.49540590663389	0.0138210069354592	0.125638959127073
Merged-chr7-114890293-4	chr7	114889796	114890796	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58354.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.16306881445291	4.18020430991265	4.71313508479813	3.95738501444605	3.68252273745871	4.01945244298472	-1.38512517412703	0.00948110054708075	0.0968454964794371
Merged-chr10-59735280-1	chr10	59734780	59735780	+	933.0	f0_balb.idr	intron (NM_001359267, intron 3 of 11)	RSINE1|SINE|B4	32717.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	5.40188716579411	5.21253235074194	5.42875932688134	5.28467299695119	5.11436427384984	5.24862190588651	-0.268487898661049	0.442705420174361	0.803309923833629
Merged-chr1-92679014-4	chr1	92678529	92679529	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30188.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	3.05201370651279	3.00429729875141	3.1884641287324	3.08111822721702	3.20551789924042	3.14569215604536	0.299721553445728	0.643410892853782	0.899801366759477
Merged-chr19-4300445-4	chr19	4299944	4300944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5778.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.68535483597033	6.77578562906397	7.04706067742651	6.91371632776022	6.87699384772877	7.04168343238326	0.162981298723321	0.528206797839857	0.850495873730805
Merged-chr8-116275727-4	chr8	116275240	116276240	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-229275.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.94690022934499	2.92089801224932	2.92160270193361	2.83396241384517	2.57647054084274	2.9348160466227	-0.74286970124202	0.315646507365938	0.709903899908234
Merged-chr8-72013916-1	chr8	72013416	72014416	+	808.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-4290.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	2.79240135107086	2.93468003259946	3.10611533953435	3.52196926058913	3.81072656633921	3.78533672297762	3.65693915403407	3.65684863291439e-06	0.000168389076395983
Merged-chr2-32288196-4	chr2	32287696	32288696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	-57.0	NM_133852	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	7.67319444715121	7.37158893182174	7.52037883986013	7.74338288587311	7.59903693059986	7.06975264520018	-0.0243160782541301	0.929615712538378	0.984182996007117
Merged-chr5-8055855-4	chr5	8055349	8056349	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	-693.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	5.12055896688023	5.36427233595683	5.55552018892598	5.24068305211725	5.36753677640172	5.26939221523777	-0.10300619644234	0.773234583654575	0.944014426479787
Merged-chr4-137367926-4	chr4	137367433	137368433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	8.10963652303252	8.0077504036516	7.52354076845311	7.53871777598112	7.7239259301528	7.55990854243222	-0.431477229546346	0.0921398827000777	0.404323138894002
Merged-chr17-79662045-4	chr17	79661548	79662548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	47148.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	4.84341573672321	4.74186498252446	4.44504115352904	4.5714919870043	4.72523418899399	4.46800808131692	-0.227859753936453	0.597623282216705	0.880433364120803
Merged-chr2-33847278-2	chr2	33846778	33847778	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	40668.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.50225280526179	3.17273357449137	3.53103117654725	3.38095381530235	3.21658834363108	3.27248380615047	-0.461369013771374	0.461889320440157	0.815107818354545
Merged-chr7-44376876-2	chr7	44376376	44377376	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1846.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	3.02759180426109	3.25913738859306	3.2926417340706	2.83298283170443	2.74019827184344	3.08739323835994	-1.47441761446622	0.0408398385618641	0.252004450806929
Merged-chr17-84188054-4	chr17	84187559	84188559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-112.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	7.8942836781265	7.97468445641298	7.85765173465978	7.62711937248551	7.92921850922103	8.05576655475428	-0.0434294857278529	0.851772300002736	0.96531854415899
Merged-chr7-132686664-4	chr7	132686140	132687140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75997.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	3.80306468698194	3.59249436408169	3.36496915210167	3.51728453274399	3.69633841637752	3.8700575502308	0.314293557740195	0.596851926414242	0.880063799680126
Merged-chr4-150239692-3	chr4	150239166	150240166	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 2 of 11)	PB1D10|SINE|Alu	2342.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	5.94816760232395	6.06662958416711	6.24248921733697	6.04938167178192	5.9388460491854	6.12027005096504	-0.0884164106411341	0.764196069558418	0.941958626520407
Merged-chr8-10831002-4	chr8	10830482	10831482	+	981.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51472.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.06641559643857	3.79248267523781	3.82516353068333	4.03023353535906	3.56840901316792	3.9457637073874	-0.140654144727554	0.798973522431631	0.952147379219007
Merged-chr16-4212396-4	chr16	4211894	4212894	+	917.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	1010.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	4.43761966288997	4.330500125937	4.18547736091362	4.2868748700179	4.32084904746384	4.30106449695249	-0.0669068246229987	0.882270295416085	0.973104104412475
Merged-chr11-52001793-2	chr11	52001293	52002293	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	5.26333361538045	5.11245880987974	5.27408013737059	5.07254751506841	5.55756514595408	4.99166918884324	0.0704402221559136	0.856490810506411	0.966529239953755
Merged-chr9-96390494-2	chr9	96389994	96390994	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26063.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.06412350598352	2.95314772865645	3.31253637309321	3.09444003455602	3.08568230927309	3.27583208174461	0.171134048686676	0.796264365570103	0.951410019719943
Merged-chr3-8974697-2	chr3	8974195	8975195	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	ID_B1|SINE|B4	-10549.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.50174685550512	4.39064432201052	5.0015234627325	5.7989686436181	5.54382116784434	5.6879673437608	2.19372189017026	5.1444961596692e-08	3.98569121465321e-06
Merged-chr3-146159578-4	chr3	146159066	146160066	+	854.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	9392.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	3.41635187447827	3.35689916204305	3.47625459696885	3.30671793305826	3.57103395902049	3.32284099767639	-0.00147627252371649	0.99804655740653	0.999579683478894
Merged-chr8-25841449-2	chr8	25840949	25841949	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	-662.0	NM_011791	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	4.88750785995928	5.21475395848925	5.41455077582944	5.0608225846863	4.82343996438343	4.94048856030604	-0.507425918280891	0.198464660632285	0.586762630823308
Merged-chr11-86692108-4	chr11	86691618	86692618	+	810.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175004, exon 3 of 3)	3' UTR (NM_175004, exon 3 of 3)	8037.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	4.11538529567062	4.07816975518553	4.39515941270755	4.03109280417071	4.05527738874272	4.01939694720913	-0.450974100395817	0.353480403980543	0.740735826287885
Merged-chr4-147351094-2	chr4	147350594	147351594	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	175228.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	2.52733893897875	2.69908366528691	2.74499892324516	2.72138873457372	2.5562246541281	3.04800943848841	0.663023276449321	0.396385652611108	0.773649472888747
Merged-chr2-72962342-3	chr2	72961830	72962830	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018042, intron 4 of 6)	intron (NM_001018042, intron 4 of 6)	16951.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.1035785950587	3.89115575545055	3.82940264360425	4.24985038010625	3.84610284924516	4.23925826001806	0.486650835028938	0.351730203788288	0.739433218716925
Merged-chr7-132793722-3	chr7	132793224	132794224	+	999.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-6789.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.96161636803415	4.42105003694835	4.11558544773338	3.71764374773169	3.76868624731599	3.86379034644847	-2.2273717271892	6.09246752759785e-05	0.00186512891109773
Merged-chr5-146248904-4	chr5	146248412	146249412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	MMAR1|DNA|TcMar-Mariner	17662.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	5.95880602740468	5.96803606594619	5.92018374210142	6.0993969602364	6.48895187683513	6.24828914075808	0.588217428506748	0.0468954614358518	0.274137807724769
Merged-chr10-77984844-4	chr10	77984356	77985356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026431, exon 7 of 7)	3' UTR (NM_026431, exon 7 of 7)	6206.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	2.62347076953843	2.69449603260144	2.70865769043327	2.43715226389573	2.63563656862014	2.52994817605863	-0.767665310832273	0.328743565635971	1
Merged-chr3-116191579-4	chr3	116191066	116192066	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61878.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.50465632437923	4.41562087697223	4.54467509609318	4.55934793917044	4.69985057119693	4.39432665502331	0.202222801955541	0.637998311904889	0.897380718500389
Merged-chr7-114294131-3	chr7	114293632	114294632	+	814.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18016.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.31636361691378	4.41761948796127	4.68214758485203	4.02084911119058	3.43198331361602	4.10076148539782	-1.72032116373995	0.00299298960345285	0.0420463749660822
Merged-chr16-16574317-2	chr16	16573808	16574808	+	676.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	L1_Mus3|LINE|L1	-14089.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	6.53407102486075	6.48752858658501	6.65072606724948	6.35210706350139	6.66452243496574	6.80013017301463	0.0969355632682088	0.726413247240432	0.929825991245655
Merged-chr11-53735783-4	chr11	53735290	53736290	+	937.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14996.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	2.87559617024045	2.69980430856123	3.1451743880021	3.09606819086519	2.93278195333414	2.79930307006959	0.167315338568644	0.820504519108115	0.957660013549369
Merged-chr6-128107949-4	chr6	128107446	128108446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	35632.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	2.89786816780507	2.88906362360396	3.0777810824933	3.07121999078766	3.0228255544698	3.31407388849232	0.8346508764819	0.2174117935034	0.611262013108248
Merged-chr5-104023711-4	chr5	104023208	104024208	+	930.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1912.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	6.95133000882994	6.86935112681192	7.04076084428182	7.00209681263772	6.9949238517483	6.99310686426351	0.0700703812605574	0.770570660763541	0.943392092118189
Merged-chr2-75701391-3	chr2	75700899	75701899	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	3264.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.37239640400838	6.20792992243407	6.17884706426607	6.52653428479269	6.76938310958743	6.53304196045493	0.587108323865755	0.0328684855627383	0.220919201346975
Merged-chr1-120057231-4	chr1	120056721	120057721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 12 of 13)	HAL1|LINE|L1	16559.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.49673452187885	5.08529492035566	5.08827298093073	6.01853286278493	5.85678360018341	5.52777740756073	1.0860727412548	0.00305066522708565	0.0426191659192987
Merged-chr9-56041877-4	chr9	56041380	56042380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011992)	promoter-TSS (NM_011992)	35.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	7.30398750867444	7.58587828354724	7.26737536055292	7.16683827021843	7.09106271024351	7.23100464363145	-0.356125089028553	0.143052899935993	0.504905437873769
Merged-chr3-69156642-4	chr3	69156131	69157131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	25398.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	7.79223062455996	8.0344495677837	7.64197369475197	8.05330439631706	8.38617460950829	7.80883096892758	0.389785033499066	0.134438500185354	0.49022125086213
Merged-chr12-55648303-4	chr12	55647809	55648809	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	49392.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	5.45122437979422	5.88668480404348	5.44256510916639	5.71523227053096	5.67364989976012	5.7068642074859	0.138898997226408	0.682337160000179	0.915072334923495
Merged-chr7-98289752-3	chr7	98289248	98290248	+	874.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	B2_Mm2|SINE|B2	19794.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	3.64044121836356	3.17640506012629	3.34828742203098	3.43200759752617	2.97121829659205	3.30590214996876	-0.611689753060797	0.369759223927118	0.754342005045842
Merged-chr12-40789780-2	chr12	40789260	40790260	+	656.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-234330.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	3.98471069619412	4.18271949520347	4.30387837631014	3.9069636671048	3.81872378246176	3.69598921227016	-1.04123543713697	0.0449747999629354	0.26749557936497
Merged-chr19-55231539-3	chr19	55231031	55232031	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	9705.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	6.64778866071384	6.2614009385072	6.11916281204377	6.62338628205893	6.17593403796726	6.24637648182179	-0.0112618562784254	0.971766950953029	0.993783614343214
Merged-chr9-102627093-2	chr9	102626593	102627593	+	713.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301689)	promoter-TSS (NM_001301689)	797.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	5.93698857861767	6.13137059399115	5.8031550979801	6.32360253166734	6.29811896895363	6.01756163992718	0.433150015400579	0.152364757301736	0.520335182662132
Merged-chr2-91078847-3	chr2	91078335	91079335	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGGGG)n|Simple_repeat|Simple_repeat	-8520.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	5.08645509888537	4.97391543284888	5.17628605052651	4.26287543226917	4.26942811257177	4.28575273805455	-1.94995938788625	4.92363453930215e-06	0.00021861567916022
Merged-chr10-69351339-4	chr10	69350834	69351834	+	742.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007659, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1578.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.41972489846716	4.35614199794216	4.66863775831874	4.72972401696447	4.75230275178846	4.61578358805106	0.553140166311958	0.18949735909317	0.575400366946119
Merged-chr6-124415930-4	chr6	124415434	124416434	+	919.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175933)	promoter-TSS (NM_175933)	-79.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	6.12143955275178	6.38734215558935	5.75202908634478	6.20880480707861	6.36313873300074	6.09581462173638	0.177777031531004	0.581150006787304	0.873236235278062
Merged-chr2-173785096-4	chr2	173784598	173785598	+	895.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019806)	TTS (NM_019806)	47527.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.38852816293606	5.51365960035173	5.69918367305797	5.23935957249541	5.1380573293124	5.18801588738564	-0.680831538115332	0.0490199744392854	0.281283309913379
Merged-chr4-136878400-2	chr4	136877853	136878853	+	761.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7824.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	2.40923759856352	2.61396153784655	2.45408075554813	2.67664983448897	2.71002916821793	2.78417749668476	1.28459160525975	0.106747333395344	1
Merged-chr17-27935251-4	chr17	27934747	27935747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	25941.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.73348564478722	6.34877078551152	6.22613310593378	6.1727096129587	6.12217768016355	6.1575026743125	-0.519760361552843	0.081055693828266	0.376702534185789
Merged-chr11-60836674-4	chr11	60836173	60837173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	6042.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	7.06087571624142	7.04849586867383	6.95180877477207	7.17107477125383	7.74657181627003	7.06606555746262	0.529453293211692	0.0640032829318625	0.329757595429995
Merged-chr5-8350963-3	chr5	8350462	8351462	+	693.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	17198.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	5.02292254732652	5.39432440718349	4.95047330462245	4.68833994573586	4.96335928518155	4.94209913497381	-0.588969608684281	0.141461438236494	0.502183459290427
Merged-chr6-48410114-4	chr6	48409602	48410602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362145, intron 9 of 15)	intron (NM_001362145, intron 9 of 15)	14516.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	3.81690552723178	4.03257616251424	4.04719394150586	4.23163708544325	4.01036780809385	4.11587571434516	0.447908217243141	0.365482626409577	0.750624883533713
Merged-chr14-54754764-4	chr14	54754279	54755279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27107.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	7.48699929358202	7.38704380835509	7.35002227055771	7.58407569198655	7.9555518952308	7.51454281623897	0.433566121212942	0.0788086603022431	0.370868463259694
Merged-chr7-126625586-4	chr7	126625081	126626081	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-111.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	5.47682966089537	5.45491853719976	5.91040831252102	5.89622471997171	5.66169985732071	6.03598676373305	0.44987607982945	0.18799035285887	0.573416108077913
Merged-chr19-5692775-4	chr19	5692266	5693266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	3635.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	5.95525642727643	5.97214596553665	6.08929894735465	6.04258849679541	6.12142591840452	6.29094856320536	0.253689963117869	0.380500450317955	0.76259289454609
Merged-chr12-79642078-4	chr12	79641575	79642575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282658.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.99822134160199	6.92130683194687	6.94916338750621	6.70169148903974	7.07993217213916	6.77182968356077	-0.130020143882035	0.618039050619332	0.889100855667229
Merged-chr9-65197383-2	chr9	65196883	65197883	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17307.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	4.89531372801966	4.70418073013552	4.3871329283221	4.74501672632927	4.3788305318023	4.59083805077811	-0.269201131798012	0.548468601551163	0.859761033097891
Merged-chr3-97232032-2	chr3	97231532	97232532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4668.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	6.11988715564999	6.12925579105168	6.18683025606765	6.48248597847975	6.76702339145128	6.71354737708532	0.846907852363003	0.00191645434646394	0.029918261399732
Merged-chr12-70235358-4	chr12	70234854	70235854	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7513.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	2.59302097447962	2.6228125076622	2.52855887592111	2.70516502273748	2.75720503406296	2.97184128110866	1.23773411042683	0.105955847211277	0.434496778609035
Merged-chr5-147078686-2	chr5	147078186	147079186	+	594.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009087, exon 2 of 2)	exon (NM_009087, exon 2 of 2)	1340.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	4.36325969887663	4.11151204790164	4.09393695645895	3.87344018877264	3.79226643323094	4.01849983910643	-0.919409185981972	0.0667165263820668	0.337529563275918
Merged-chr5-96163008-3	chr5	96162514	96163514	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1024.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	7.96790177068176	8.36156491130418	7.65692509749254	7.99309760523129	8.25392980565279	7.93338595310439	0.0492795499583189	0.855085292662465	0.966059905720255
Merged-chr9-122887642-2	chr9	122887162	122888162	+	584.333374	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001177505)	promoter-TSS (NM_001177505)	-809.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	4.34679154054051	4.68834495076236	4.65605116976586	4.89992828432835	5.03381403779679	4.94904298453401	0.905227378275823	0.0271231825568222	0.196180960899518
Merged-chr4-129861571-3	chr4	129861049	129862049	+	924.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40841.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.44152831506405	3.27627649863892	3.36273140481632	4.56131769780819	4.57468974232592	3.88151369789389	3.52810059748154	8.68039036248738e-08	6.30259966214529e-06
Merged-chr6-38354477-4	chr6	38353976	38354976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347122, exon 1 of 13)	5' UTR (NM_001347122, exon 1 of 13)	127.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	9.26485553905086	9.59514709381683	8.94391780823296	9.01525123581557	9.41380312551644	9.10332101432776	-0.148765608879198	0.55818549639423	0.864568767967295
Merged-chr2-178413891-2	chr2	178413391	178414391	+	849.68335	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081289)	promoter-TSS (NM_001081289)	572.0	NM_001085501	228966.0	Mm.472736	NM_001085501	ENSMUSG00000049999	Ppp1r3d	2610024M03Rik|Gm359	protein phosphatase 1, regulatory subunit 3D	protein-coding	3.8010337374567	4.06947371337211	4.29904051752147	3.86575385950148	3.95039071829281	3.86528489420436	-0.500164324534402	0.33988012532545	0.729599748931428
Merged-chr3-8667183-4	chr3	8666677	8667677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-139.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	7.55721101766811	7.44487004076351	7.12954874820989	7.22321303413348	6.87352395516984	7.09660802944777	-0.491298358674062	0.0602026579700361	0.317728010996667
Merged-chr6-15464549-3	chr6	15464049	15465049	+	782.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON9|Unknown|Unknown	-256112.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.27821745252737	3.49679455426023	3.31101196065765	3.37491516305826	3.01930621190069	3.54472761330399	-0.165290297705617	0.801417828319811	0.952960653064406
Merged-chr13-58113341-4	chr13	58112861	58113861	+	827.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362415, exon 1 of 15)	5' UTR (NM_001362415, exon 1 of 15)	286.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	2.87039875226337	2.81983850628572	2.87182112617614	2.58972441856954	2.68052239785928	2.94390326004701	-0.583957732502905	0.431836884277641	0.797113524712142
Merged-chr14-27344735-4	chr14	27344236	27345236	+	939.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	8699.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.66071699705942	4.95128909033159	5.01006436973005	4.78760706640192	4.94840255325032	5.13891711306537	0.181619551630317	0.649283990745398	0.902147045789438
Merged-chr15-78895872-4	chr15	78895377	78896377	+	923.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	4.07979187589966	3.5300560899865	3.93029255654507	4.57230942516666	4.12979826572447	4.33344655573758	1.3912506666377	0.0117313466291642	0.112458743124366
Merged-chr1-93115338-4	chr1	93114854	93115854	+	930.337524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13480.0	NM_001110315	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	3.98557143368271	3.97253614056215	4.02674406543812	4.11023001141997	3.8589741691754	3.73352156505099	-0.240330553070857	0.640592678918382	0.898524971863643
Merged-chr1-162587746-3	chr1	162587239	162588239	+	914.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 4 of 7)	intron (NM_001356527, intron 4 of 7)	16911.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	5.17894313680541	5.33144430560098	5.05491639194592	5.76959938055743	5.58752653229761	5.33264563974591	0.739468669329188	0.0383523785072906	0.242456487407176
Merged-chr11-49060268-2	chr11	49059768	49060768	+	728.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145164, intron 1 of 1)	intron (NM_001145164, intron 1 of 1)	3944.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	4.1009483225534	3.67150635402863	3.76736116229428	3.29975351799707	3.87491093806643	3.62324190348817	-0.761137130121522	0.22637960948011	0.621328050925588
Merged-chr11-85522884-2	chr11	85522384	85523384	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	169720.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	4.18967715989906	3.88090949659217	3.85531778423502	3.65206186469834	3.53111545342774	3.54229813586968	-1.3724879459931	0.0134601209029504	0.123491460655759
Merged-chr3-142527634-4	chr3	142527136	142528136	+	971.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2700.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	3.69830411217241	3.64397656884114	3.8024668017828	4.47387432574362	4.21110923046127	4.07486532792626	1.77839437219412	0.000652467660351833	0.0129664507003954
Merged-chr13-5868970-3	chr13	5868448	5869448	+	666.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	7459.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.31492294562703	5.12042178990285	5.43622553967612	5.57367823945565	5.49924817441117	5.14481472952865	0.274934654543978	0.446349690751746	0.805829266594444
Merged-chr10-10471292-4	chr10	10470800	10471800	+	841.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1014.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.37576528114521	6.5566543276176	6.4529712931769	6.86151214569596	7.1936536800595	7.01276528594671	0.889888792790562	0.0007232809499065	0.0140122843492014
Merged-chr15-100669193-2	chr15	100668693	100669693	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	307.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.84572947243748	5.59346508675862	5.84023662135268	5.90988195672936	5.95815865389943	5.87722954269775	0.282367627909351	0.356757581700323	0.743448231367782
Merged-chr11-77763998-2	chr11	77763498	77764498	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13237.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	3.2277640943103	2.90871166562543	3.05463374038678	2.90787418402715	2.76980419827418	2.82001729846336	-1.16231551064558	0.104029688343883	0.430116884855544
Merged-chr7-127615186-4	chr7	127614699	127615699	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	73.0	NR_155450	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	5.78660079445038	5.74337784991678	6.0694537944733	5.76668631177115	5.30783791850081	5.66326823318934	-0.513106165826724	0.132797143427078	0.487669562823071
Merged-chr1-173940529-3	chr1	173940026	173941026	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 2 of 9)	Lx8b|LINE|L1	1966.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.95789083557527	6.30071158731976	5.69759352624892	5.48986546026404	5.57618095277511	5.49699987749292	-0.897296135325619	0.00799753975762502	0.0860656089178043
Merged-chr10-42269552-4	chr10	42269064	42270064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	7178.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	7.24526730313527	7.21756557443094	7.13402938503224	7.3370568132938	7.55292547669454	6.91253818547036	0.157558663808646	0.559416273521272	0.8649455419793
Merged-chr12-88360588-4	chr12	88360139	88361139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028105)	promoter-TSS (NM_028105)	125.0	NM_001361599	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	7.2944155541604	7.76726773207084	7.12775200412938	7.5016416459924	7.39892452047062	7.06334498540366	-0.139721174723979	0.626861201115456	0.892975730763041
Merged-chr2-26352814-2	chr2	26352314	26353314	+	981.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-704.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	3.7812795165381	3.95191051345391	4.32080919674156	3.80796358279428	3.77392374572915	4.04982378049189	-0.459421186143551	0.394257461774853	0.772200053653507
Merged-chr12-102743734-4	chr12	102743230	102744230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324515)	promoter-TSS (NM_001324515)	11.0	NM_001324515	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	9.03321311661085	9.2758989715259	8.42513564629227	8.86524132030378	8.89059130408003	8.58316496871958	-0.242278592384056	0.377048696170142	0.759599589234051
Merged-chr5-114567895-4	chr5	114567405	114568405	+	928.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-346.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	3.79851412953933	3.70218547730019	3.51837764743743	3.57037655522035	3.44443858792668	3.59005547188515	-0.536388834768128	0.343471141810973	0.732367959280244
Merged-chr10-30618437-4	chr10	30617934	30618934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025798)	promoter-TSS (NM_025798)	-68.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	8.75766623046507	9.05924818562974	8.60498753279418	8.77259871152175	9.00293743198903	8.60804941550044	-0.0226544551275231	0.923828657644135	0.982786900372783
Merged-chr6-29621438-3	chr6	29620936	29621936	+	950.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11587.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	5.67810801036174	5.71505850628367	5.7714763539801	5.35370741912988	5.52745572927957	5.25479877872824	-0.610130722600231	0.0651916539514488	0.332868533229599
Merged-chr2-180726215-4	chr2	180725718	180726718	+	873.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	879.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	5.92997757106811	5.83425643670526	6.02661785504124	6.20562059844125	5.85260596982064	5.79778230015363	0.0706912073371886	0.821155902877836	0.957942312428027
Merged-chr5-124541312-4	chr5	124540833	124541833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	CpG	542.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	7.73569105842311	7.67869423660933	7.54488118047497	7.6084262307823	7.20271517206987	7.64875368351259	-0.238545088503538	0.337817323133207	0.72769978571614
Merged-chr3-130060840-4	chr3	130060346	130061346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	61.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	7.46123121246788	6.89237938636958	7.29512518230645	7.65467448156434	6.6365689164078	7.2270030107451	0.00504891328929824	0.988212410264027	0.99731652667245
Merged-chr6-66952002-4	chr6	66951517	66952517	+	941.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	ORR1D1|LTR|ERVL-MaLR	55126.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	5.58038550454976	5.43977600646585	5.43999029865403	5.28569471406047	5.32883360910107	5.38280802850029	-0.311875877495852	0.349311186525041	0.737365802637771
Merged-chr10-68239819-4	chr10	68239258	68240258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	38968.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	8.36226198575228	8.18565948695831	8.35397930832948	8.55300559311017	8.84163520586685	8.26690534707031	0.39055446596749	0.103620274073493	0.429191884369916
Merged-chr1-152809103-4	chr1	152808621	152809621	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	RSINE1|SINE|B4	8968.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.63146425428803	7.80254819284323	7.59516077961786	7.80346997084386	8.26074534387501	7.94497034832666	0.487483993445169	0.0444567345299074	0.265686703064321
Merged-chr7-143769746-3	chr7	143769257	143770257	+	787.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2764.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	2.43431854581433	2.85757414029913	2.68060868559143	2.39706473224515	2.26376212821876	2.36531685867744	-2.16445404281048	0.0158812210446486	1
Merged-chr10-5080220-5	chr10	5079692	5080692	+	931.4733279999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 37 of 54)	intron (NM_001079686, intron 37 of 54)	-11129.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	4.04283048263975	4.30161552246624	4.22497387291793	4.20552112090838	4.19410384139334	4.42117323028925	0.208268367407054	0.657525362297514	0.904798742244684
Merged-chr12-85943041-4	chr12	85942546	85943546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118096.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	6.29130977330188	6.38130676367499	6.20663472351479	5.98602597959668	6.11822787527038	5.95134266661212	-0.459949278885656	0.106245057269253	0.43518946171409
Merged-chr8-124021339-4	chr8	124020823	124021823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133966)	promoter-TSS (NM_133966)	74.0	NM_133966	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	7.21658175894413	7.2609739179623	7.18929390392154	7.52445659820737	7.05717067494045	7.05433224708521	0.0155916944567623	0.952448940225399	0.989124260059756
Merged-chr7-98656738-4	chr7	98656239	98657239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172280)	promoter-TSS (NM_172280)	-170.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	7.5207072084274	7.66406742582216	7.44897472979963	7.61937721978685	7.691863368754	7.36341679723635	0.0317868244728051	0.893077820741467	0.975200520944414
Merged-chr1-149956320-2	chr1	149955820	149956820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	4970.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.2544595083726	6.62455927125412	6.35574430186127	6.48925350416663	6.55923209291088	6.73977671669597	0.271485196819434	0.335355814268717	0.725502745402512
Merged-chr6-123244406-4	chr6	123243880	123244880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190321, intron 3 of 4)	intron (NM_001190321, intron 3 of 4)	14537.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	5.33224839262747	5.40121677935009	5.47961368505264	5.30732310958485	5.27016178963519	5.17030050547649	-0.292177349769424	0.391629237867286	0.770665004131955
Merged-chr10-81293843-2	chr10	81293343	81294343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	880.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	6.04289425270225	5.64767288764513	5.89739412065416	5.89708557409179	5.71665705803069	5.64868684609314	-0.198845021471451	0.538003076958374	0.854944075396138
Merged-chr10-127481450-4	chr10	127480962	127481962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20224.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	7.39036730585222	7.31565772919189	7.37313147000158	7.15398924495531	7.42831787192396	7.30937022952756	-0.0792785780778305	0.73558800348426	0.932744628746236
Merged-chr5-53590449-4	chr5	53589974	53590974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080927)	promoter-TSS (NM_001080927)	-12.0	NM_001359152	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	7.49646289196702	7.41298782072604	7.21325473775814	7.36695066155181	7.15518415051746	7.06512795050033	-0.268195839851448	0.274751117716268	0.672159561417594
Merged-chr6-114256865-2	chr6	114256365	114257365	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25770.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.69917468845695	4.55218791592578	4.61821555516213	4.80259616309686	4.57892786557942	4.55957459040023	0.0667378964793016	0.872079637016598	0.970261003150518
Merged-chr16-33529925-4	chr16	33529417	33530417	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	11322.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	7.26053005998908	6.92006950958935	6.8297489185708	6.21348362123683	5.62424071053881	5.78883647249669	-1.82626907304915	1.17012091945696e-08	1.04020749429674e-06
Merged-chr5-122895574-2	chr5	122895074	122896074	+	892.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 12 of 22)	PB1D9|SINE|Alu	4776.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	6.43998367139157	6.34722689047957	6.08779680859295	6.31516910343424	6.66340969163029	6.10230796752795	0.144585383069407	0.6421535925897	0.899352614913166
Merged-chr1-72710855-3	chr1	72710369	72711369	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	-391.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	6.14266794612003	6.45007629953217	6.37251148339313	6.27102493906877	6.73117131857724	6.46918648356264	0.30091918286041	0.30955482241176	0.705161597263331
Merged-chr4-125145387-4	chr4	125144897	125145897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17516.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	6.11745838786328	6.35289506860442	6.18175652684671	5.62612400902744	5.61640337823007	5.64429814665125	-1.05086124775798	0.000467010520615859	0.00996896136464967
Merged-chr8-20424831-4	chr8	20424328	20425328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028428)	promoter-TSS (NR_028428)	-14.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	5.05365125467045	5.02523104927469	4.53815517005883	5.09950497450415	4.80517274214945	4.60813151230841	-0.100480828382072	0.81824204150064	0.956886944398959
Merged-chr10-117899603-4	chr10	117899122	117900122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25837.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	8.24515664543858	8.10500203357392	7.72130760852453	8.19887446808288	8.57046550703991	7.81433302937259	0.270541424727894	0.342647868358039	0.731516324791908
Merged-chr5-65577051-3	chr5	65576564	65577564	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 3 of 6)	B1_Mur4|SINE|Alu	39819.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	3.56006373506562	3.21392778150789	3.52078688724665	3.73067689224668	3.7635305501176	3.42093140863112	0.766822727979557	0.207845137308593	0.59868364609575
Merged-chr10-8513435-4	chr10	8512922	8513922	+	864.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	5403.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.76376996227552	4.66886986593283	4.90922486064877	4.89443220506603	5.29409734650902	5.01012422793773	0.68012126747968	0.0853249950649778	0.386568778687067
Merged-chr15-65737474-1	chr15	65736974	65737974	+	773.0	f0_balb.idr	Intergenic	Intergenic	-49546.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	2.47723360717808	2.77579269124244	2.61598397094698	2.27865096883324	2.09321254973007	2.29771080731804	-3.32223380335775	0.00208660267432896	1
Merged-chr18-23873366-4	chr18	23872872	23873872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	69402.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.75865771832673	7.851484578294	7.53859924567685	7.74111632206614	7.97543139287709	7.14612564282141	-0.0690966881048462	0.811477939944194	0.955303137357202
Merged-chr6-115814255-4	chr6	115813727	115814727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 7 of 8)	intron (NM_001110506, intron 7 of 8)	-5484.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	4.32554103832304	4.25138978916077	3.99647007716499	3.98078293090085	3.76936855865559	3.91208107724636	-0.950195846812552	0.0597032229833244	0.316278460431429
Merged-chr18-63691919-3	chr18	63691430	63692430	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 1 of 7)	CpG	429.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	8.15778770757632	8.65543311631282	8.29684593084939	8.07620049677893	8.29365100653733	8.28506850576294	-0.236512722027159	0.324558659364891	0.717544999689449
Merged-chr1-37300852-4	chr1	37300368	37301368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	1030.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	5.86272662334252	6.35032598273601	5.93190350994218	6.11080672672265	5.98819823415605	5.64315099582279	-0.236739012174789	0.481957801994164	0.82522727772513
Merged-chr1-131110937-4	chr1	131110432	131111432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13089.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.70702699904647	7.51629402644624	7.1025151685638	7.42163658325193	7.83433771834502	7.26424862837999	0.0947585827523371	0.743653526839874	0.93574031770482
Merged-chr14-20734576-4	chr14	20734080	20735080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-18.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	8.26406978897687	8.33992650876108	8.13638647453731	8.34340506077518	8.21824107234522	8.17164608042582	-0.0076592745119684	0.970923119656251	0.993599367110128
Merged-chr1-78657798-4	chr1	78657309	78658309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028817)	promoter-TSS (NM_028817)	-16.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	6.63432410392488	6.64635855595487	6.61302827338103	6.3721023645737	5.98309437548505	6.20798279975068	-0.720798292985581	0.0101570329178034	0.101486228659616
Merged-chr6-86594840-4	chr6	86594335	86595335	+	952.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33339.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	6.46280009579149	6.57205689482527	6.66206545445016	6.74538101245385	6.77255285349714	6.20905450156051	0.0790756528149056	0.787752628175212	0.94877064431094
Merged-chr6-128446279-4	chr6	128445778	128446778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	7521.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	3.56742149152334	3.83498015481586	3.74142631498283	3.72736424150149	3.5017708320278	3.36376810997856	-0.610740909903185	0.296102591572388	0.692837106451674
Merged-chr10-77269251-2	chr10	77268751	77269751	+	590.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030262, exon 9 of 9)	3' UTR (NM_030262, exon 9 of 9)	9951.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	2.30808868538579	2.31189714143412	2.53420586060576	2.30623512903744	2.23897153201131	2.66713778857274	0.168329415423512	0.844750620619904	1
Merged-chr2-119336094-4	chr2	119335598	119336598	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019454)	TTS (NM_019454)	-9901.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	4.83267187529127	4.40184421427796	4.65933127442096	4.65589706599026	4.47245579602691	4.8007557432513	-0.00571763651492288	0.989562102387275	0.997611022725407
Merged-chr2-152740626-4	chr2	152740128	152741128	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4377.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	4.64502191260998	4.86504349344771	4.97666756700934	4.58599477993724	5.05230873710668	4.70989549243737	-0.0439533703145373	0.917719794757878	0.981718564389729
Merged-chr1-177441102-3	chr1	177440678	177441678	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1173.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	6.06382014743956	6.56498383327863	6.31301816970605	6.33917585694261	6.44359974905724	6.41110380908496	0.106850327048906	0.717080059857373	0.926979087819795
Merged-chr2-75769292-2	chr2	75768827	75769827	+	834.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-62850.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	2.89856643892554	2.99355565346609	2.74901035198491	2.99662493114126	3.06272892256641	3.01342553251631	0.639230121571073	0.362168988030624	0.747682847191469
Merged-chr5-123398040-4	chr5	123397520	123398520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	3222.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	6.49748389130291	6.40046790414538	6.68464889590942	6.73457721808888	6.92695813116197	6.75893093303593	0.459027363077307	0.0810435440951554	0.376667107025062
Merged-chr17-70853715-4	chr17	70853226	70854226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-194.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.11473961363845	8.16487589992574	8.01318457088719	8.14811822520772	8.16350559299605	7.97075036595899	-0.00121014288013402	0.995451184978621	0.998961028701257
Merged-chr6-116266258-2	chr6	116265758	116266758	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-274.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	6.03074648284539	5.69201258067659	5.61231033023307	5.95049471601402	6.13534554148337	5.76037493119851	0.296958150480631	0.366840151920846	0.751897609642077
Merged-chr8-71591393-3	chr8	71590903	71591903	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-781.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	5.86119047344813	6.31387435990453	6.14761602697958	6.12685451771224	6.38478647157927	5.85250798605634	0.0524821605208114	0.872575440998247	0.970261003150518
Merged-chr1-173878493-2	chr1	173877993	173878993	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1694.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	7.44449361290224	7.69795626968402	6.83788091521753	6.88619096163069	7.02114103895302	6.52363437515986	-0.826310835097414	0.00979432398056235	0.0990472558601002
Merged-chr16-92867887-4	chr16	92867371	92868371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41797.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.47429718231452	8.38223838795312	7.99766547570797	8.15313067438044	8.5030399675192	7.9169705909674	-0.117654255245206	0.655950432512988	0.904511343918715
Merged-chr9-82888881-4	chr9	82888381	82889381	+	942.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 29 of 39)	intron (NM_001081216, intron 29 of 39)	59075.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	4.17460750261614	4.96513119496664	4.44837852632773	4.34036316667239	4.51940016183924	4.55867309663104	-0.260117148192719	0.599526557362357	0.881068655236582
Merged-chr16-3908687-4	chr16	3908184	3909184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	5.0	NM_028484	73261.0	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	6.23668345453676	6.30209791919155	6.1545741271528	6.17230010927486	6.35679576099485	6.12743289670818	-0.00932282219264797	0.973639705272205	0.994039095662068
Merged-chr1-92910717-4	chr1	92910225	92911225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138577)	promoter-TSS (NR_138577)	-36.0	NR_138577	75995.0	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	5.96077182468049	5.51715669233415	5.81385021275068	5.71010569699998	5.15543421733636	5.64682524202973	-0.476822307879293	0.19408533284912	0.581296921414137
Merged-chr13-5858984-4	chr13	5858456	5859456	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045891)	promoter-TSS (NR_045891)	-864.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.45117643843416	3.36019158194612	3.39961015697899	3.13930760549832	3.02823567386382	3.4700834610721	-0.762194669158664	0.237613040860958	0.634122003684586
Merged-chr14-65381729-4	chr14	65381232	65382232	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	23056.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.10970871851597	5.43091323560509	5.27491909600859	4.86282243242131	4.94249069542278	5.00678861593878	-0.721895791712039	0.05156663830462	0.28955909820201
Merged-chr7-45054334-4	chr7	45053807	45054807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022999, intron 6 of 6)	intron (NM_022999, intron 6 of 6)	-1426.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	7.11263446605037	6.95409283656636	7.14043351289295	7.05101933895927	6.91157820599047	7.11212599350943	-0.0704192582939405	0.772918720310173	0.943931380748419
Merged-chr4-150086484-2	chr4	150085984	150086984	+	910.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1019.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	4.46308218727658	4.20487245055516	4.76935647368948	4.82637796921735	4.40669345399401	4.43845979548717	0.202914473253618	0.667978864123926	0.908976375106763
Merged-chr16-93915630-1	chr16	93915130	93916130	+	637.666687	f0_c57.idr	Intergenic	B4|SINE|B4	13937.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	2.98662966021114	2.70633536977785	2.69667887229108	3.25583158610457	3.00252346384717	3.26678605816301	1.74760493615568	0.0211240655923481	0.167435989919817
Merged-chr15-97362443-2	chr15	97361943	97362943	+	779.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-115156.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.33266069140526	5.38511084978895	4.86705636876445	5.13514847979629	4.80849347036162	5.15464605498678	-0.401477768655547	0.313930376355461	0.708312869876137
Merged-chr14-52105460-2	chr14	52104960	52105960	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1439.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	5.36894053822737	5.33887917318175	5.30374156787334	5.05239380546416	5.29336442925201	5.24006059932331	-0.274754340400877	0.43137481928865	0.796881045962937
Merged-chr7-75686294-4	chr7	75685800	75686800	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-162038.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.44435421329405	6.39395846008972	6.34972154320403	6.30607984719189	6.40383250713937	6.48317054401203	-0.0037880818442312	0.988702573082818	0.997426973334006
Merged-chr8-105346622-3	chr8	105346118	105347118	+	850.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1352.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.58384817655347	6.73076794180657	6.86135827372306	7.34259625797278	7.00253678894539	6.83044713784791	0.548150232251761	0.0456242377850094	0.269776973963549
Merged-chr7-139211956-1	chr7	139211456	139212456	+	726.0	f1_balb.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-1032.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	5.57659518327613	5.7067779868877	5.5706045908921	5.28945648791867	5.6248863588316	5.54867197775217	-0.231152687726048	0.488204359444713	0.828998794069485
Merged-chr11-116767910-2	chr11	116767406	116768406	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_011371, intron 3 of 8)	intron (NM_011371, intron 3 of 8)	7601.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	4.33061961803429	4.12422821863161	3.62140915134663	3.29636652476169	3.12818757988114	3.51906405118908	-2.82102047553135	2.83263057530327e-05	0.000980438955531758
Merged-chr17-34072269-4	chr17	34071771	34072771	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20108.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	3.65557850867683	3.53278080789094	3.68478019217793	4.36992873632637	4.47479824534777	4.26700153039502	2.35671823029012	7.17503561926707e-06	0.000301677798791296
Merged-chr2-68430841-4	chr2	68430322	68431322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	41159.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	3.94959438623413	3.83039685538269	3.78921829428481	3.88231515121552	3.898522415219	4.00828908166959	0.204295549284598	0.687823952468588	0.917193226920892
Merged-chr10-39451916-2	chr10	39451416	39452416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	82117.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.55451504812034	6.28586400608953	6.23911878446353	6.39249299789944	6.33696729308535	6.41746493640207	0.010061587438367	0.971188323480683	0.993727127580947
Merged-chr6-5200093-3	chr6	5199618	5200618	+	936.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6172.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	2.22772654912511	2.22455584550722	2.36861251018432	1.97609103348952	2.05436204096831	2.38046114102449	-0.915835032354392	0.336028426941486	1
Merged-chr1-184613841-2	chr1	184613341	184614341	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-56150.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.99282785791798	3.64025576390118	3.89108343257975	3.76362057832241	3.79899399045572	3.86139698636661	-0.1327157491989	0.803258200885009	0.953445862102393
Merged-chr10-84340327-4	chr10	84339813	84340813	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100158.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.99282614250638	5.52197285660103	5.78369816340221	5.78991881368701	5.61528747575027	5.318328882438	-0.336471086985801	0.339919221749425	0.729608383720945
Merged-chr3-108881132-4	chr3	108880632	108881632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	8876.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	6.75972336488309	6.59041382872079	6.47553929636165	6.26322009163137	6.47091575434385	6.5700533824949	-0.292341640549699	0.287753746101067	0.685154630160178
Merged-chr1-13256410-4	chr1	13255932	13256932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 2 of 22)	intron (NM_008678, intron 2 of 22)	115997.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.6647794703346	3.64273098703064	4.04610766673725	4.54449645451172	4.64062001168124	4.59503636050417	2.37742557418987	3.00591534506608e-06	0.000142030780256819
Merged-chr15-91260701-3	chr15	91260203	91261203	+	646.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68696.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.23243641039418	3.09457283588191	3.13802015994921	2.89453620340036	2.8446577956353	3.0946091784867	-1.00196597647413	0.141458533989567	0.502183459290427
Merged-chr12-102517841-4	chr12	102517358	102518358	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37083.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	3.63765467281878	3.50101619718987	3.34499154563686	3.28567361987941	3.334865181921	3.1745712337567	-0.90652234136808	0.144756847641877	0.507621952799257
Merged-chr16-35767600-7	chr16	35766890	35767890	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	B1_Mus1|SINE|Alu	1966.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	4.87297173329547	4.53791700125411	4.66076823978807	4.51058107290572	4.60410182094142	4.2839037046234	-0.52183163151165	0.237031985641097	0.633445447752582
Merged-chr8-123477323-2	chr8	123476823	123477823	+	823.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	-539.0	NM_054070	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	5.80623939697698	5.57039254704642	5.5528266737641	5.69025426587475	5.58829978357636	5.55787939119252	-0.0723597970460649	0.822555301934129	0.958131723875675
Merged-chr2-122145946-4	chr2	122145464	122146464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-1723.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	7.60232031490842	7.26175826227704	7.1470753883203	7.48315919148681	7.6917951039752	7.29171987242731	0.217619099344537	0.409221599681393	0.782609453389411
Merged-chr7-79780945-7	chr7	79780433	79781433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12657.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	6.23795311094136	6.17667920683927	6.07443860514033	6.05500514177343	6.44611960270527	5.86594351199764	-0.00839709706111199	0.978822322866923	0.995160277495735
Merged-chr15-55390340-3	chr15	55389836	55390836	+	988.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 14 of 47)	intron (NM_181277, intron 14 of 47)	82586.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.93333825640576	5.0255791497126	5.19017251874563	4.964871925488	4.94620164234852	4.98796987627439	-0.175041111671112	0.638154237808072	0.897380718500389
Merged-chr14-20479950-4	chr14	20479459	20480459	+	953.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009674, exon 1 of 13)	5' UTR (NM_009674, exon 1 of 13)	174.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	5.58061650969976	6.06460475217646	6.03985866909231	5.42419712439416	5.53546762323901	5.56494325174007	-0.735254500341152	0.0300914974687274	0.209457363340963
Merged-chr17-13008215-2	chr17	13007715	13008715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013671, exon 2 of 5)	exon (NM_013671, exon 2 of 5)	376.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	8.04133385404992	8.21909316529062	7.91172165693697	8.16909748722877	8.05313444614526	7.96759603578123	-0.00131708831035895	0.995261402624145	0.998961028701257
Merged-chr2-45194141-1	chr2	45193641	45194641	+	600.0	f0_balb.idr	Intergenic	Intergenic	-76699.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.4885549714387	6.41141142210178	6.5928692174786	6.54251078698581	6.67468659300629	6.63534233370743	0.201866833192452	0.438737360363536	0.800720702779634
Merged-chr8-71283834-2	chr8	71283334	71284334	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	ID_B1|SINE|B4	11120.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.73470253033473	4.72553755351804	5.237247432839	4.46735553200373	4.78052926945865	5.06044995921268	-0.280468069328028	0.530946740046991	0.851363932161699
Merged-chr12-12287481-6	chr12	12286942	12287942	+	939.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25303.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.42257452893284	6.55770123076775	6.48539769952602	6.78694256488723	6.88858211755966	6.66627878435918	0.475141041246322	0.0664504430646734	0.336720139456795
Merged-chr5-100550479-3	chr5	100549972	100550972	+	849.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21733.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.22744072226149	3.17413314729554	3.19640361024036	3.46549052012458	3.20838387440369	3.326919288647	0.55368800885076	0.373004482384865	0.75692463723386
Merged-chr6-17520852-4	chr6	17520360	17521360	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	56903.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	3.71707443531386	3.90925160751784	3.5321503837322	3.41005099914745	3.35915493793168	3.3710137822059	-1.30192328427948	0.0278795773481032	0.199393567353258
Merged-chr10-67202282-3	chr10	67201776	67202776	+	693.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	MLT2D|LTR|ERVL	16526.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.40935820628057	5.4413657633328	5.84354904867342	5.63203015124445	5.75519367756351	5.81008382123409	0.309849607748893	0.354809427552565	0.741862808502317
Merged-chr5-114926385-4	chr5	114925899	114926899	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3159.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	6.96622295922046	6.66640437600121	6.35104995840595	6.93308067606997	6.77393639459324	6.43205093778478	0.0635127218789704	0.836152397418904	0.961948623063023
Merged-chr9-66346688-2	chr9	66346188	66347188	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3762.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	6.24065035686365	6.24724250761831	6.18658204719722	6.10941685915051	6.8073978908671	6.49865020714141	0.468555492276991	0.134584238717454	0.490430403023745
Merged-chr2-73547430-4	chr2	73546936	73547936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17949.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.78797556547231	4.64134762848362	4.38682304625046	4.50340746894945	4.6245144382998	4.74936563255543	-0.000941620658020515	0.998253594014823	0.999590080903912
Merged-chr17-24141672-4	chr17	24141173	24142173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-79.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	6.69778553344855	6.55912267501112	6.66808797396104	6.76898441093131	6.49367002970274	6.32772336431287	-0.147745784762446	0.592672214967437	0.87814861040298
Merged-chr8-84638060-2	chr8	84637560	84638560	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 45 of 47)	B3A|SINE|B2	24792.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.03196605215259	1.96882851780667	2.01318186287731	2.30060229695042	2.0389527497071	2.29254382515094	1.59934932295181	0.0899877842769359	1
Merged-chr14-60290541-4	chr14	60290051	60291051	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	25346.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	5.77439834686007	5.9361781034739	5.62179943348453	5.69360463678318	5.85028485380001	6.05116891675854	0.133047686831623	0.677555467689917	0.913010966021872
Merged-chr2-4919012-4	chr2	4918502	4919502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	6.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	8.00216585813254	8.32795563992167	8.03460063106578	7.63655719444214	7.7954005398563	7.2776566614573	-0.763700982928378	0.00285052943096231	0.0404824804388994
Merged-chr7-64388911-3	chr7	64388414	64389414	+	893.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026483, exon 3 of 11)	exon (NM_026483, exon 3 of 11)	3322.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	4.42451995648842	4.48192210167126	4.23159025157734	4.43322571605991	4.64605886892722	4.48266214552594	0.349429382599792	0.428752429495041	0.795496513778478
Merged-chr3-62458550-4	chr3	62458036	62459036	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	48452.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	3.4987409324733	3.58674072585372	3.647221003822	3.68437857910259	3.4622842943446	3.50274422690046	-0.0843730204084381	0.881650986287503	0.972846584805466
Merged-chr15-93917088-4	chr15	93916565	93917565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	10046.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	4.6679290982571	4.87092922908308	4.7581894469414	5.03674150486133	5.33916746304649	4.90411106832659	0.75995065992726	0.0556647913230157	0.303622153812225
Merged-chr17-35135284-5	chr17	35134771	35135771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252468)	promoter-TSS (NM_001252468)	93.0	NM_057171	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	8.79352597546653	8.71256624649804	8.28494052248134	8.66966288661324	8.84575122696413	8.45681920572251	0.0688656169695841	0.777817936612916	0.945251190347279
Merged-chr1-45858232-4	chr1	45857713	45858713	+	964.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63047.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	6.34343331755495	6.53312476141731	6.26347419216006	6.16107994934421	6.49724210662546	6.19734843986063	-0.141666498990873	0.626468344826556	0.892916235446326
Merged-chr9-16238162-4	chr9	16237659	16238659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	Lx10|LINE|L1	140072.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	4.5655014585868	4.31248623471595	4.22748392239779	4.47021452206321	4.27749440854962	4.38872077188896	-0.0148986506206348	0.973887659732934	0.994171649042264
Merged-chr5-92443443-2	chr5	92442943	92443943	+	857.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-8244.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	4.37701007174153	4.31600856767756	4.71090462178759	4.70962305396869	4.65520196299691	4.81237546554954	0.62306072726517	0.146802052805912	0.511199213637762
Merged-chr4-122838610-4	chr4	122838118	122839118	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 1 of 8)	L2b|LINE|L2	2391.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	5.34258324788299	5.26689028265257	5.22603632990163	5.22111308666451	5.36704778547353	5.00759692832992	-0.123845277041957	0.730388814564422	0.930884711548651
Merged-chr1-171871909-1	chr1	171871409	171872409	+	542.0	f0_balb.idr	intron (NM_001289470, intron 3 of 8)	MER63C|DNA|hAT-Blackjack	32212.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	3.27500686915273	3.44800361838434	3.67455317852525	3.389974966083	3.37095909817312	3.64529674971869	-0.00261205593922447	0.996559675631388	0.999103012741004
Merged-chr5-64311106-2	chr5	64310606	64311606	+	789.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310611, exon 15 of 22)	exon (NM_001310611, exon 15 of 22)	80749.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.8163486390363	2.6739711634221	3.11876580600833	2.90728430635269	2.93164785819105	2.90346489840009	0.187897400200356	0.795959212533302	0.951396269938008
Merged-chr2-23035393-2	chr2	23034893	23035893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	4848.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	3.58150306552127	3.63735928260009	3.62679496197735	3.71420242560181	3.41963860882667	3.64437898676755	-0.0769821466707159	0.89139727903882	0.974810545608534
Merged-chr19-38028447-1	chr19	38027947	38028947	+	780.0	f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	15130.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.0363052942703	3.93781328778355	4.41384189805993	3.97519382509051	4.25138369134286	4.23123900271141	0.0708432323471377	0.888494039862437	0.974043020158646
Merged-chr16-94504783-2	chr16	94504283	94505283	+	687.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	21846.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.20414686709725	4.05988544505852	3.96111930551958	4.33197782113856	3.5627846412927	3.81946946541352	-0.382138703476489	0.509192112515253	0.84026015734467
Merged-chr6-13874501-2	chr6	13874001	13875001	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2932.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	5.32540758532246	5.23944656027563	5.08051732584456	5.32608758160724	5.3887195432653	5.3462049092138	0.255990149082962	0.460108516200696	0.814248395979731
Merged-chr2-156258278-3	chr2	156257799	156258799	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	B1_Mur4|SINE|Alu	-54174.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.63008492823492	6.48579716513739	6.35349309768857	6.46922916329103	6.58979845178668	6.18120994053346	-0.102721048789591	0.719185916961937	0.927725750008819
Merged-chr5-66138825-4	chr5	66138337	66139337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12141.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.22748010028901	7.30528036273336	6.61148772889761	7.21574896282103	7.31571566241105	6.87508624593317	0.0912424638148245	0.762253153879807	0.941547592462139
Merged-chr10-14531245-4	chr10	14530722	14531722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	13814.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	3.41110339450893	3.51922978789165	3.43229884659356	3.995652849295	3.3428555501796	3.72476501425716	0.894876080881599	0.146356458495064	0.510321223405113
Merged-chr10-61475715-4	chr10	61475216	61476216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153542)	promoter-TSS (NM_153542)	-117.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	4.61719089321806	4.47079714695417	4.4385212141748	4.60576209439953	4.47435456371473	4.70909968429485	0.189406556589137	0.655562826023499	0.90429384180742
Merged-chr4-63385977-4	chr4	63385468	63386468	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12272.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	5.31159373320015	5.70974545121438	5.85250281440047	5.83389254165226	5.5497417628919	5.74361974739078	0.135141430307597	0.697171184184459	0.919859963548202
Merged-chr7-19715705-4	chr7	19715172	19716172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016871)	promoter-TSS (NM_016871)	-243.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	7.19957917786567	6.84539282785624	6.78943466313475	6.80345302429949	6.67659399785327	6.83284904713576	-0.303286308588202	0.25598662026226	0.652997783463079
Merged-chr3-127797465-1	chr3	127796965	127797965	+	723.0	f1_c57bl6.idr	3' UTR (NM_145133, exon 3 of 3)	3' UTR (NM_145133, exon 3 of 3)	6808.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.10515004790952	3.88127144209478	4.12394207536583	3.52418515249782	3.68458878394934	3.70844589725588	-1.28188085680089	0.0179702908352788	0.15059643063973
Merged-chr11-63131494-4	chr11	63130978	63131978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	21.0	NM_001302255	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	7.19676439596789	6.95648232907471	7.17254798939757	7.6234589479537	7.59111155274397	7.30187683215022	0.60724495576596	0.0133330400460656	0.122763704343591
Merged-chr5-67306999-4	chr5	67306511	67307511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310629)	promoter-TSS (NM_001310629)	56.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	8.02018328479444	8.03294568952045	7.73311317928854	8.174867737169	8.14942330285483	7.57536259951139	0.0893888944272762	0.733953457637343	0.932325051544019
Merged-chr12-80922995-2	chr12	80922495	80923495	+	646.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033786)	TTS (NR_033786)	1452.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	3.20866652249931	3.50533561950823	3.50469370815581	3.57937644540007	3.76493438783743	3.52094991379663	0.797689305456477	0.182054831004253	0.564649559348511
Merged-chr7-19217719-4	chr7	19217224	19218224	+	973.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	ID4_|SINE|ID	5186.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	4.30862150440514	3.97402422002731	4.28412042740013	3.50250948951971	3.83747439954133	3.78914927008048	-1.45456000837463	0.00866037233666299	0.0911798293411837
Merged-chr5-114701050-2	chr5	114700559	114701559	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6720.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	3.42207724225113	3.25818025801487	3.31607937391468	3.33945982926357	3.39248208212298	3.33048472139475	0.0857165285281958	0.886627256110641	0.973794308941933
Merged-chr9-46149815-2	chr9	46149315	46150315	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 3 of 24)	intron (NM_027498, intron 3 of 24)	-78815.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	3.03478159885486	2.80348339918761	3.09120223286321	2.732920949665	2.45482866770797	2.99429185886786	-1.20171166454458	0.144232673997649	0.50698345462979
Merged-chr19-4058776-4	chr19	4058261	4059261	+	858.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362043, exon 2 of 6)	exon (NM_001362043, exon 2 of 6)	686.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	4.4494958512063	4.50147757549038	5.28418869478173	4.2203906086277	4.07248216962886	5.18733808164281	-0.429422348361792	0.655335303819373	0.904247185909195
Merged-chr13-55513470-4	chr13	55512971	55513971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026131)	promoter-TSS (NM_026131)	-25.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	3.89127552368086	3.89965568331469	4.05792035930557	4.04451686552332	3.35720802586798	3.55978288804553	-0.826360232715521	0.172981326212228	0.551704940452568
Merged-chr6-148444016-2	chr6	148443516	148444516	+	832.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347518, exon 1 of 19)	exon (NM_001347518, exon 1 of 19)	336.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.23357185375022	3.86654212906161	3.98984996446238	4.42678725103349	4.08159484854654	4.009231074668	0.412677446014022	0.421464978452307	0.790322303942262
Merged-chr19-40740833-2	chr19	40740333	40741333	+	707.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009848, exon 10 of 10)	3' UTR (NM_009848, exon 10 of 10)	81063.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.67952995710082	2.63751432129796	3.03070231086958	2.46536166896328	2.67270974422738	2.82107857089279	-0.688925127732848	0.387977210608445	0.767920317866686
Merged-chr18-60806704-4	chr18	60806203	60807203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2854.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.56956298599384	7.37094454562556	7.40660392978989	7.73466271675851	8.07523182475993	7.72816931793522	0.593058539604563	0.0133588869121803	0.122920077649972
Merged-chr16-91482033-2	chr16	91481533	91482533	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-3182.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	3.21299512471228	3.131465487509	3.12206434061935	3.55429201765924	3.34580805773351	3.64087850716774	1.42074132975784	0.0238972083968346	0.181710477652272
Merged-chr10-75774083-2	chr10	75773583	75774583	+	616.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-709.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	3.83936610763316	4.17033499301261	3.95308048044276	3.5753751904226	3.85329196716313	4.06838373396465	-0.473788144937019	0.387109133653458	0.767462183104757
Merged-chr13-5850367-3	chr13	5849847	5850847	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7745.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.00801021805595	3.23259901691152	2.9300904760798	2.91456462045979	2.87463728737609	3.12278292552327	-0.454286815568104	0.513474424417544	0.842597552908258
Merged-chr1-191138557-4	chr1	191138030	191139030	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26287.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	4.32391111565049	4.06560275953035	4.23995676568694	3.96076875848863	3.80450017549764	3.98169088025722	-0.888650284953386	0.0730508088400705	0.35515113654482
Merged-chr15-84131651-4	chr15	84131138	84132138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8463.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	3.94166371005549	4.17893735870491	4.07535926017133	3.88728236541494	3.78055271945629	3.8493227219246	-0.712116893408773	0.15947991792224	0.531714749788586
Merged-chr1-152534858-2	chr1	152534358	152535358	+	695.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	L2b|LINE|L2	90359.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.48846755528975	5.18342236576021	5.7818180987095	5.88157096668871	5.32445950186835	5.47295016369109	0.15799311739337	0.680164647199479	0.914139397449033
Merged-chr7-27860014-3	chr7	27859502	27860502	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	-583.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	5.48519300265016	5.89145520312947	6.00937183661645	5.99030165066108	5.76162762762404	6.004201006694	0.196010739023545	0.554899814186422	0.862989905297353
Merged-chr11-100343224-4	chr11	100342682	100343682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	8775.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	7.14647595527719	7.12851562460968	7.33239826505343	7.03178335101875	7.29998630033067	7.14795185177023	-0.0466774756462553	0.848408859202296	0.964356989789491
Merged-chr11-100526104-2	chr11	100525604	100526604	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	1896.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	3.9449756415406	4.00057365314163	4.29480346565634	4.2498676393734	4.50634245995708	4.22864764153243	0.728669557256687	0.131758232558866	0.485405199476187
Merged-chr1-125371045-2	chr1	125370612	125371612	+	949.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	64615.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	2.12044898930644	2.31814421299249	2.28616411941755	2.0772214981955	1.96448250653635	1.96098511255257	-2.02929736875474	0.0418138220149254	1
Merged-chr1-161528339-4	chr1	161527845	161528845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33688.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.83999728345852	4.69297428515355	4.55245808839773	4.46131599151331	4.33181783719456	4.69956896955051	-0.515722315071147	0.232796661269496	0.629066394953106
Merged-chr10-88357166-4	chr10	88356658	88357658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027878)	promoter-TSS (NM_027878)	-83.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	7.97756673273806	7.91174057230664	7.64324094975502	7.71413661270669	8.03605484575217	7.75478486923067	-0.012969802845803	0.956783664023918	0.989887454023164
Merged-chr4-86666965-2	chr4	86666471	86667471	+	582.0	f0_balb.idr|f1_balb.idr	intron (NM_007408, intron 3 of 7)	B1F|SINE|Alu	3088.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.98683603731874	4.79608224434292	4.91633707151084	4.58315759117193	4.42372722661595	4.51157866036615	-0.937952737701376	0.0215704768040793	0.169869035956259
Merged-chr15-86185928-6	chr15	86185440	86186440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145475, exon 1 of 13)	5' UTR (NM_145475, exon 1 of 13)	201.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	8.39922449968661	8.21182215080034	8.35824008728132	8.25355756690355	8.18514114360038	8.30760588629552	-0.108248282908903	0.60124152820655	0.881898948141997
Merged-chr2-27717825-2	chr2	27717325	27718325	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	7242.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.84697648322225	6.2983978945137	6.35450493764998	5.95028214605082	5.99447620188748	6.20524993246845	-0.225398223216093	0.476058457627741	0.822323655123358
Merged-chr18-82505876-2	chr18	82505376	82506376	+	726.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	30753.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.58464401131855	3.8016682882403	4.08577960791976	3.57147944310753	3.66864686141112	3.97761114002514	-0.285118103198781	0.617883307959426	0.889003221204315
Merged-chr7-80845569-2	chr7	80845069	80846069	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16539.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	5.36706146914348	5.27077735089803	5.65847329796114	5.70372310401028	5.85406293200871	5.86785411945385	0.711215507815491	0.0310280128087176	0.213194074973539
Merged-chr13-112473823-5	chr13	112473407	112474407	+	860.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 2 of 16)	intron (NM_010560, intron 2 of 16)	9837.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	3.7168520136852	3.59911838092001	4.04102670001771	3.65598384861143	3.7713710756134	3.56584564800592	-0.387022497222398	0.494302659072084	0.831916174273259
Merged-chr12-85375651-2	chr12	85375151	85376151	+	834.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-934.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.54443390608316	7.48489933558074	7.1261373137666	7.55798489267855	7.66716936180227	7.18395559555525	0.130393901549155	0.624781923487434	0.892217795485307
Merged-chr14-32932372-4	chr14	32931876	32932876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59006.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	5.7765307644735	5.48048673297229	5.25387640738525	5.06289450855891	5.12907740354398	5.03487697500012	-0.900320151778545	0.0143280209913776	0.128758765527915
Merged-chr4-9099342-4	chr4	9098846	9099846	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169947.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.87233026657084	2.96567226461109	3.0371225259654	3.04709180893555	2.87594358829316	3.62789676853561	1.11416806522911	0.128764075964176	0.479799601167289
Merged-chr7-96999124-4	chr7	96998617	96999617	+	830.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	L1Md_F2|LINE|L1	47590.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.12372733022536	3.06722978057237	3.13727286444593	2.93977515475743	2.81197992628006	3.2085740619985	-0.54914878009468	0.425409135952591	0.793060074928154
Merged-chr17-25288850-2	chr17	25288344	25289344	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9550.0	NM_178372	328780.0	Mm.127166	NM_178372	ENSMUSG00000056399	Prss34	C130091P12|Mcp11|mMcp-11	protease, serine 34	protein-coding	1.91147004556387	2.01351128277446	2.11209311168882	1.84745282418679	1.78776717758605	1.85164747522639	-1.65644805719511	0.102039417744478	1
Merged-chr1-131084065-1	chr1	131083565	131084565	+	1000.0	f1_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13778.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.76018773159225	7.94072565761732	7.70043795168767	7.67429842529696	7.84180284559185	7.66562866927971	-0.107267162179269	0.633704149705735	0.896060120341977
Merged-chr3-8964990-4	chr3	8964507	8965507	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	-861.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.72407048419044	4.68186743204865	4.80536192194403	4.75624141945127	4.9955107639724	4.9074698962031	0.363368643286131	0.35401821192668	0.741153538256263
Merged-chr1-16667852-1	chr1	16667352	16668352	+	554.0	f0_c57.idr	intron (NM_027415, intron 2 of 2)	Lx9|LINE|L1	2661.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	4.39096451420401	4.77169250250892	4.96684651071131	5.07685025845163	5.05199168669421	5.50239428428331	1.0719672564565	0.0122827900321038	0.116124963263041
Merged-chr4-43957385-4	chr4	43956891	43957891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027450)	promoter-TSS (NM_027450)	-311.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	3.81364375140241	3.48451513641063	3.56458871172328	3.52276803694939	3.48075765944147	3.68796735859996	-0.24752273949843	0.666759504341618	0.908367417591988
Merged-chr14-102982671-5	chr14	102982173	102983173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-36.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	7.99116292590637	7.96719277065836	7.93518427947747	7.66463424734413	8.08092770855851	7.85714820994135	-0.115565612822394	0.616672429548026	0.888421011873208
Merged-chr17-25919118-3	chr17	25918660	25919660	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	CpG	554.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	6.551567743807	6.43502529779482	6.25220063527365	6.42696705075017	6.40520096013344	6.33269328198329	-0.0583773654899887	0.830957471366359	0.960370002015736
Merged-chr7-96976208-4	chr7	96975713	96976713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	ORR1D2|LTR|ERVL-MaLR	24686.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	5.93332545468664	5.88310262542369	5.56727294897709	5.65308401770319	5.55500005060791	5.34715755709219	-0.519564595745561	0.119013224937992	0.461133989319696
Merged-chr8-11475331-4	chr8	11474811	11475811	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2618.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.20829720894616	5.93177278814052	5.76752386847036	6.27042535669425	6.10405164928619	6.1232655061521	0.298806966371822	0.329207159947681	0.721152738507735
Merged-chr4-101354615-4	chr4	101354115	101355115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	832.0	NR_040640	68400.0	Mm.272098	NR_040640	ENSMUSG00000087361	0610043K17Rik	-	RIKEN cDNA 0610043K17 gene	ncRNA	7.2670974175118	7.44324948657316	6.75011404258536	6.9885872843228	7.25876908119179	7.0774568897908	-0.121517244852535	0.671571905822266	0.910546279207362
Merged-chr5-17842259-4	chr5	17841754	17842754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-6358.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	5.3791996107252	5.16476586555487	4.75135038822668	5.3459277616018	5.37195167361502	5.24130829558125	0.372367278571434	0.339364813571157	0.7291905794032
Merged-chr13-34006898-2	chr13	34006398	34007398	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4024.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	6.88930974975574	7.00904136369638	7.1079036225904	7.3528649529523	7.30461193155481	7.08878981808741	0.390280877030485	0.109772423120533	0.442879353326866
Merged-chr5-63811976-4	chr5	63811486	63812486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-509.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	4.64765309469526	4.55024465243587	4.14646536635596	4.37377672711232	4.37367053909846	4.31571023740352	-0.309357456982424	0.50483876750115	0.837836810464043
Merged-chr2-93046225-4	chr2	93045763	93046763	+	828.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-119.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	6.83653936904942	6.76541036925734	6.59255165841763	6.92410980338401	6.24756193742502	6.47186599922984	-0.252694216535472	0.408398429384983	0.782032951304577
Merged-chr2-140170643-4	chr2	140170130	140171130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081090)	promoter-TSS (NM_001081090)	-16.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	5.56428611692969	5.47958078999967	5.51680929883624	5.58896529103773	5.41650709792744	5.12487905140956	-0.230453033795005	0.506696436550903	0.838542828803423
Merged-chr9-44510227-4	chr9	44509723	44510723	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030256, exon 9 of 9)	3' UTR (NM_030256, exon 9 of 9)	11087.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.50586522252076	4.54028192247438	4.66360818114339	4.76078955588628	4.17596179291431	4.48640579768256	-0.185804247502856	0.686376922607712	0.916726339909189
Merged-chr14-8114921-2	chr14	8114421	8115421	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16710.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.15944680205671	4.52878966792294	4.19914767517495	4.05477149538768	4.22853904523883	4.40009410271363	-0.222185077613723	0.645610205177973	0.900657290738149
Merged-chr17-6008038-6	chr17	6007550	6008550	+	824.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113351, exon 7 of 25)	exon (NM_001113351, exon 7 of 25)	470.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	5.36536875941298	5.0510398724421	4.82167102737292	4.93137751247305	4.61073198899891	4.6363390878101	-0.82046036737887	0.0497148997227065	0.283627147840569
Merged-chr17-80553397-4	chr17	80552896	80553896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	10438.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	5.13047390026614	5.36225065159062	5.18186711992673	5.46671802770749	5.43316161019202	5.46574435435957	0.435326565577368	0.203822483299474	0.594024469127845
Merged-chr5-65490015-4	chr5	65489513	65490513	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	2822.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	3.4806960517659	2.85380832854662	3.22547127362193	3.4312416033183	3.13074217562573	3.71908011220069	0.883872080373369	0.230798468737865	0.62651849864288
Merged-chr18-60742853-2	chr18	60742353	60743353	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	3893.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.30343604297564	4.21874882238824	4.54314876517937	4.29852914846612	4.23984066798871	4.0822557222516	-0.371215235065729	0.427971961169897	0.79478410196054
Merged-chr3-32427836-1	chr3	32427336	32428336	+	720.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8315.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	3.42349042734484	3.50812536634644	3.5364891902346	3.22395451742505	3.31535926548927	3.50164164931989	-0.544858119706467	0.361927354416523	0.747554953612761
Merged-chr9-62816379-2	chr9	62815879	62816879	+	888.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4731.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	2.8899142670006	2.92401919999368	2.66885409936393	2.92446643761297	2.70315976941645	3.05300852295392	0.295655048743725	0.691736733235307	0.918479255575252
Merged-chr11-107473731-2	chr11	107473231	107474231	+	767.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-3011.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.40494291205443	3.22980659605361	3.4105082762228	3.4155739836094	3.10941821217684	3.779993584012	0.404640241764304	0.536452915259345	0.854005781221772
Merged-chr2-152105511-4	chr2	152105008	152106008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-16.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	8.74828942676158	8.79186610688439	8.47574962788693	8.7337432936779	8.62811755720593	8.3975836227109	-0.118863536990383	0.593344960177462	0.87844954599148
Merged-chr15-101318318-4	chr15	101317801	101318801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25089.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	3.8061339340708	3.78834602904196	4.36379101748106	4.08544095792625	3.49550853155058	4.14473108373709	-0.207219696016349	0.730678802657247	0.931004560386871
Merged-chr2-154678012-3	chr2	154677522	154678522	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20996.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	6.40079819215376	6.723875448514	6.53949774441912	6.39839554835115	6.43830465443811	6.54703485082457	-0.169450849061337	0.534126838886665	0.852897311598411
Merged-chr7-128333471-2	chr7	128332971	128333971	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-35340.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	5.18527729493989	4.71146173239747	5.14051583284228	4.79117692153116	4.83763038457641	5.17248234191926	-0.194067208698048	0.637661109393699	0.89735407749672
Merged-chr6-114644168-7	chr6	114643664	114644664	+	910.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1067.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	8.43645248400896	8.75852777488345	8.30517500257923	8.55890142455323	8.86303498832522	8.36058838908354	0.135384624089335	0.588130674166658	0.876193818234966
Merged-chr16-21912601-2	chr16	21912101	21913101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	20632.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	4.53704535284049	4.14915248419203	4.01174645425176	4.2923656589376	3.72857641983737	4.08275035345383	-0.57111991423712	0.293453643740154	0.690276375383417
Merged-chr17-50415475-4	chr17	50414993	50415993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16E1|LTR|ERVL	-94054.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.75890761503475	6.92376473482763	6.99280277398455	7.136698071977	7.11730376086709	6.98303959581528	0.295720680513611	0.228562124843907	0.623772419036761
Merged-chr11-102309105-4	chr11	102308592	102309592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044383, intron 12 of 19)	CpG	8195.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	4.85408083973233	4.72278442990687	4.68104107911843	4.78895791002436	4.61864429794367	4.74732531621645	-0.100315525303907	0.802270456738748	0.953197339007501
Merged-chr1-173941909-3	chr1	173941409	173942409	+	803.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	583.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.56219933075558	5.08966767944786	4.81575595837476	6.47254488289659	6.89696051256876	6.58134624073516	2.62323967319764	0.000413392345074158	0.00902822841179279
Merged-chr5-123128594-4	chr5	123128130	123129130	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3999.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	3.99789825500738	3.74135625601824	3.82042816382929	3.96253735227988	3.72481678987429	3.9403936785424	0.0473638784538034	0.928244523882163	0.983802612059568
Merged-chr19-43673787-4	chr19	43673297	43674297	+	791.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	1084.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	5.48134932556235	5.77288266355022	5.46228219176452	6.02273599313379	5.8645753266149	5.88261921858115	0.606384710148823	0.0590727667189234	0.314644824497861
Merged-chr11-72041937-4	chr11	72041423	72042423	+	822.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-579.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	3.22223855085553	3.13971489225851	3.46432010016149	3.46262607977904	3.13024370433615	3.14069131710885	-0.0895647786015528	0.890582819952422	0.97453903646658
Merged-chr18-53845615-1	chr18	53845115	53846115	+	694.666687	f0_balb.idr	Intergenic	Intergenic	-16498.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	2.49236976142905	2.54739833086734	2.64103800121265	2.42161905283028	2.52238562874547	2.52801640370973	-0.400769665412408	0.60927234300987	1
Merged-chr2-73491721-4	chr2	73491239	73492239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5986.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.88193107884865	5.38028178790613	5.73570063037648	5.54765896332604	5.82590658590511	5.36381862548472	-0.138831856183749	0.700799441691762	0.921002460903367
Merged-chr17-56461738-2	chr17	56461238	56462238	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	483.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.78082412707075	3.73130829067143	3.94439853452999	3.60629915748955	3.5807992200745	3.6133446737974	-0.73527307962136	0.175696627574383	0.555763732644335
Merged-chr4-43038342-2	chr4	43037842	43038842	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	PB1D10|SINE|Alu	1959.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.68850406554935	4.37691740905147	4.33094792995822	4.39559254454737	4.23484082696869	4.30724657116127	-0.439553971398879	0.333954769287379	0.724695087702488
Merged-chr14-122981077-2	chr14	122980577	122981577	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360598, intron 1 of 18)	intron (NM_001360598, intron 1 of 18)	2065.0	NM_001360599	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	1.83715616359783	2.01960511112303	2.0613169411088	2.14101090535409	2.15905172395098	2.26898900959772	1.71041208878013	0.083142542559384	1
Merged-chr9-45959818-4	chr9	45959330	45960330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4581.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	5.73733511321741	5.9393990693422	6.05665847729175	5.5434125679597	6.01845070975072	5.91654703916176	-0.115605315846623	0.72565155169367	0.929707128236285
Merged-chr15-77931829-4	chr15	77931331	77932331	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2837.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	4.5512221008338	4.669754007262	4.9011836404009	4.6898164762295	4.92995166007746	4.99944811980524	0.393168500048089	0.335975876407404	0.726090328603253
Merged-chr2-128855607-4	chr2	128855112	128856112	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8320.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	4.49344345283304	3.94726235204033	3.94799585806023	3.99613817846469	4.05555357372247	4.25843165855245	-0.170003193764748	0.746624880680883	0.936300236930265
Merged-chr2-90487537-3	chr2	90486966	90487966	+	937.015869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-8292.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.38661570626043	4.8717202973321	5.05122560321013	5.60035945987146	5.39758507262193	5.50249249811919	0.741338509108722	0.0478881533597912	0.27740723090793
Merged-chr15-83038707-2	chr15	83038207	83039207	+	689.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5310.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	3.41035333733195	2.85297859080378	3.30113838471266	3.33483933363483	2.99347543315493	3.20251434275391	-0.112904465836909	0.874293742726623	0.970740098808354
Merged-chr4-11031934-4	chr4	11031450	11032450	+	741.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24331.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.55376433349669	3.39487776755331	2.97545033005321	3.21404476694321	3.00664958419761	3.2410573754624	-0.738244530924902	0.290866317035522	0.688664305177637
Merged-chr5-99378569-2	chr5	99378069	99379069	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-125642.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.47652986638436	6.62485302885144	6.67627417701096	6.93625551864471	7.1086194276442	7.03781496650964	0.68462784415552	0.00648331913625123	0.0739147384710343
Merged-chr7-106760194-4	chr7	106759709	106760709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6823.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	3.82695738594612	3.8464229060586	4.2641813910223	4.30880911103122	4.5056372522297	4.19720482223608	1.03705471787546	0.0392214370755562	0.245692790497845
Merged-chr4-42998880-2	chr4	42998380	42999380	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 1 of 16)	PB1D9|SINE|Alu	1627.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	5.2720018092081	5.35785543342837	5.06561415369829	5.02298970019406	5.4994413817073	5.33201811881915	0.122157469990213	0.744291911482051	0.935910073302885
Merged-chr5-103802699-3	chr5	103802196	103803196	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 3 of 19)	intron (NM_133919, intron 3 of 19)	48123.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	2.53724677041814	2.69901546175732	2.83340195779163	2.59332944648177	2.49649510237242	2.90550805294641	-0.113236146676961	0.885647252373446	0.973636976161493
Merged-chr2-89125516-2	chr2	89125016	89126016	+	572.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001011860, exon 1 of 1)	exon (NM_001011860, exon 1 of 1)	213.0	NM_001011860	258177.0	Mm.377369	NM_001011860	ENSMUSG00000075101	Olfr1222	MOR233-14	olfactory receptor 1222	protein-coding	2.20843612599295	2.1356416382316	2.51726714109284	1.9834169932273	1.98925710515261	2.53195422672387	-0.650793540225244	0.522478813427738	1
Merged-chr12-79318571-2	chr12	79318071	79319071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	intron (NM_009014, intron 5 of 10)	21220.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.5395159935859	4.29518698232338	3.96983961157919	4.37457298041986	4.22120886603435	3.93097154688333	-0.277849013937093	0.593648625881308	0.878589727861081
Merged-chr3-51195920-2	chr3	51195420	51196420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-28527.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.06194974539244	6.12414507564549	5.85583109913904	6.104226254852	5.94133465724584	6.08345938046843	0.0209111008400192	0.943644522028633	0.987453245208137
Merged-chr1-60668488-3	chr1	60667982	60668982	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77906.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	5.21477273191	5.38496673030029	5.33717080833875	4.78196512977261	4.9462013061741	5.01137379949606	-0.83725235913926	0.0224040811770657	0.173969832138636
Merged-chr8-94917613-4	chr8	94917098	94918098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033533, intron 1 of 8)	CpG	500.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	4.87094479682532	4.9544694624138	5.00933701761306	5.39570782410231	5.23192123291336	5.10991441061204	0.65543403188625	0.0726641070711577	0.354098683524269
Merged-chr13-98831026-1	chr13	98830526	98831526	+	666.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15577.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	3.28837951627989	3.12562992007042	3.0521869151571	3.20152135467004	3.06244666801289	3.24272354261011	0.0140469366739691	0.982720691451436	0.996084390562607
Merged-chr14-52257889-4	chr14	52257373	52258373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20301.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	7.14147077310575	7.29207100625129	7.59129618226787	7.26711105470077	7.40020629189197	7.42827858901894	0.0280615932134157	0.910691800880499	0.979933515874906
Merged-chr6-148534612-4	chr6	148534155	148535155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79654.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	6.84319845918578	6.78777058301725	6.79929370105141	6.64944327326956	6.93569945614505	7.04943894213417	0.116975628747233	0.652780206396889	0.903019146610213
Merged-chr7-80636866-2	chr7	80636366	80637366	+	671.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 2 of 4)	intron (NR_040343, intron 2 of 4)	849.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	4.22337741634498	4.23645439850628	3.99876677272937	4.34958479810276	4.13279008572809	4.16805326600646	0.15162201316106	0.750464812369532	0.937550343416037
Merged-chr4-117042703-4	chr4	117042208	117043208	+	929.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	23306.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	6.35362989293278	6.43428604688574	6.28410691507151	6.16627373145022	6.62536975222882	6.42162569216265	0.103251933849628	0.721248764912012	0.928451291671431
Merged-chr11-82022053-2	chr11	82021553	82022553	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13524.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	4.92284413268816	4.2804560370333	4.25675475426032	4.51612246534563	4.47096387347576	4.51108681885766	-0.0927211651609796	0.848444076204568	0.964356989789491
Merged-chr14-45677415-4	chr14	45676890	45677890	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19247.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.46981986457935	5.183184750348	5.9053771152268	5.33489354691697	5.36607138457883	5.29253831551149	-0.400596162926103	0.290175438797882	0.687811016166082
Merged-chr17-29488707-3	chr17	29488206	29489206	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2339.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.40468889638844	8.61177690001565	7.99080624202157	7.88035676716738	8.2071128206012	7.47773954067855	-0.656948059221317	0.024031674840602	0.18229418486812
Merged-chr12-101980412-3	chr12	101979906	101980906	+	605.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 1 of 14)	RMER4B|LTR|ERVK	4432.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	2.98545245461149	3.04053561208009	2.73830378488581	3.07222003453269	2.70708181856651	3.12293219609444	0.218118805214596	0.771764166330422	0.943614978016208
Merged-chr17-69396415-4	chr17	69395937	69396937	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12633.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	5.12045882192545	5.42613730802616	5.37433112938801	5.06158797682449	5.24038927476378	5.49346674281831	-0.0861335640945629	0.814533776439355	0.956366417809675
Merged-chr11-106613221-4	chr11	106612707	106613707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198292)	promoter-TSS (NM_198292)	-277.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	7.85350647604361	7.67422583314679	7.20832940061871	7.81015812861251	8.09694730373809	7.54454526003355	0.329296049831927	0.24696484741374	0.644045601901006
Merged-chr16-50299232-4	chr16	50298717	50299717	+	928.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	133172.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.75182109663164	4.85167448159992	4.79838532367831	4.61858348812761	5.02177578123721	5.13622318143743	0.31227603084941	0.444441269590038	0.804198524737369
Merged-chr4-137914288-2	chr4	137913795	137914795	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 3 of 19)	intron (NM_199307, intron 3 of 19)	52058.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.33812317939543	3.07294178295864	2.92884734299208	3.06465497286404	2.90425352651016	3.24271461311124	-0.246658219709383	0.724574415254306	0.929435720851808
Merged-chr9-7871871-4	chr9	7871371	7872371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1299.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	8.3683696075325	8.39915083903666	8.23653689409563	8.57896594222278	8.72982112243553	8.23261727325663	0.276018133355361	0.232156147935811	0.628428015141772
Merged-chr13-91636198-4	chr13	91635694	91636694	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	T-rich|Low_complexity|Low_complexity	-105327.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	5.78983861130639	6.12505485220891	5.61889787939707	5.30385584018316	5.27575241608295	5.13281073372974	-1.18295710826905	0.000729479908090996	0.0141093826574699
Merged-chr11-104439825-2	chr11	104439325	104440325	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	2466.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.87449079947724	6.09485027720918	5.74385904797545	6.18654959072677	6.03343434685933	5.80588835027451	0.179854096406635	0.568313776195597	0.868549528189122
Merged-chr1-128359716-4	chr1	128359218	128360218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313695)	promoter-TSS (NM_001313695)	-13.0	NM_008567	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	4.35269239696921	4.76627355666498	4.480158997314	4.65534526036716	4.6282413317105	4.41365014999921	0.0611398329719171	0.890439422431717	0.974528422443459
Merged-chr11-117725117-4	chr11	117724614	117725614	+	871.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54534.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	6.00852594616433	5.83648362967889	5.9556357151917	5.66100110308511	5.66541345669077	5.60967226942958	-0.515524725846055	0.0917383691277117	0.40336959513732
Merged-chr1-143702426-2	chr1	143701926	143702926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 1 of 16)	intron (NM_145991, intron 1 of 16)	467.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	6.66006268184246	6.57698895278271	6.34863504234729	6.65638213101566	6.3353116935369	6.62579395173475	-0.00511053897714353	0.985462784939465	0.996904015210561
Merged-chr4-126816202-2	chr4	126815702	126816702	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	62432.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	3.33806771154455	3.39519154026527	3.67366166437781	3.25577144352414	3.43691622977749	3.69391564250918	-0.00549764588166017	0.992865665882525	0.99860227640219
Merged-chr12-102426530-4	chr12	102426035	102427035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	13278.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.42206856608928	6.57675860302655	6.442760357044	6.40998271573127	6.32584259275762	5.9643119083425	-0.369230577869192	0.202675226196305	0.59252027125208
Merged-chr14-63118703-2	chr14	63118203	63119203	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3759.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.65945194686401	6.22546606996233	6.36437494686047	6.39271946225231	6.44951487688226	6.4976835453045	0.0207610478501804	0.942040391506735	0.987097394617189
Merged-chr1-160792316-3	chr1	160791738	160792738	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013862, intron 1 of 20)	CpG	700.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	3.94296653094213	3.70318594786913	3.60319957767346	3.46754242682156	3.26940118475549	3.44953226169796	-1.35053695758351	0.022509888947858	0.174622677566042
Merged-chr7-80721685-2	chr7	80721185	80722185	+	618.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 35 of 37)	L1MC4a|LINE|L1	-32808.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	2.69921044257615	2.59203976993333	2.81458032600216	2.52835225794926	2.54437140185178	2.7689239050154	-0.489089314830588	0.523396407322677	1
Merged-chr16-57502434-4	chr16	57501917	57502917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-46825.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.33829973132101	7.13711413587158	6.82594550805803	6.98952202348497	7.23136411427658	6.68559778686104	-0.190161271249691	0.510927989374526	0.841230434419772
Merged-chr12-3908776-2	chr12	3908276	3909276	+	602.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	17032.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.3449797349951	2.6243987333734	2.69351770897315	2.56643973706968	2.56880227568119	2.70607345468376	0.297721017730413	0.71079229733182	1
Merged-chr11-69901017-4	chr11	69900536	69901536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-50.0	NM_027419	70419.0	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	7.89403410718174	7.9086888450059	7.64393769722012	7.73491293650665	7.87252004398025	7.65329943491486	-0.0936897932338476	0.680535360718422	0.914280879868547
Merged-chr17-34188229-2	chr17	34187729	34188729	+	933.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013585)	promoter-TSS (NM_013585)	673.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	5.95285180900587	6.16424001449576	6.32356415696536	6.38485711321997	6.69774346864982	6.76447756640802	0.780632062729522	0.0075374633204405	0.0825016111506463
Merged-chr19-6084442-2	chr19	6083942	6084942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	533.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	6.79920436853536	6.4561792365697	6.20700432467678	6.94618423253318	6.60055183347052	6.29036773806455	0.201925912010456	0.534470332799738	0.853068627162717
Merged-chr1-152582504-2	chr1	152582004	152583004	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	42713.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.46693071349653	7.23614586529926	7.02747825514441	7.00428533312129	7.414589221246	7.2143328474543	-0.0537708988085081	0.840316162752782	0.962819298477451
Merged-chr17-84328659-3	chr17	84328161	84329161	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	137547.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.158744051288	5.14902712234545	5.35812436076734	5.13771601299062	5.43125587821786	4.98706477863037	-0.00868805645620536	0.981485968621664	0.995717195177154
Merged-chr13-47225524-4	chr13	47225014	47226014	+	922.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	31511.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.43647174163375	7.91775069167142	7.53139668554965	7.33361340150908	7.65389303002432	7.47682103668524	-0.22183004684366	0.393284193250736	0.771515439837752
Merged-chr8-69938499-4	chr8	69937995	69938995	+	850.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	35888.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	4.25770201698126	4.5252089769941	4.20704978377798	4.39278202650411	3.82099555441366	4.02889209507514	-0.656849747576588	0.203795147871874	0.594024469127845
Merged-chr10-84919038-2	chr10	84918538	84919538	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	1425.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	3.01049139235286	3.09341620765918	3.10943958398219	3.00624457640187	3.00233793935611	2.8794443857513	-0.477071772692722	0.478752865666719	0.823891137932924
Merged-chr16-32333357-3	chr16	32332852	32333852	+	792.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177633, intron 1 of 10)	UCON11|Unknown|Unknown	1100.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	5.53938151709693	5.55501793425176	5.77064238178733	5.83071587886682	5.78944271452612	5.67672443090795	0.283584424447069	0.367978615416102	0.752932784919663
Merged-chr6-122593521-4	chr6	122593025	122594025	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	8919.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	5.15071466068488	5.44951986012532	5.46403997657542	5.54094466737037	5.43874108678347	5.68778320609438	0.372818078427881	0.279016503582072	0.676468683859472
Merged-chr11-11669235-2	chr11	11668735	11669735	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16690.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.14380558303376	3.85739772607915	4.6462364967926	4.38378554480509	4.37412652658564	4.52463051998749	0.469112939660312	0.363943880743133	0.749357676652347
Merged-chr2-35176081-2	chr2	35175581	35176581	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 41 of 43)	intron (NM_012018, intron 41 of 43)	25039.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	3.29008360865123	3.45543865529467	3.60706131655938	3.14185743420631	3.48409043589671	3.67588439901406	-0.0152596297171033	0.980849624826696	0.995623353730457
Merged-chr10-127591148-4	chr10	127590648	127591648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 11 of 88)	intron (NM_008512, intron 11 of 88)	30000.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.09812288463815	7.51928658689146	7.54350180240245	7.72351332351869	7.76395137342127	7.6297070578677	-0.0679267542618902	0.797048409346614	0.951622622008858
Merged-chr15-81845276-1	chr15	81844776	81845776	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	13050.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.04758426458227	7.21944933628069	7.14115267433458	6.86801720777285	7.24168568131717	7.37897834217498	0.0598398467909634	0.819369990863179	0.957275778207879
Merged-chr1-93445588-4	chr1	93445079	93446079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	CpG	122.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	8.53500802384127	8.54061875832786	8.37244100534309	8.3264735429953	8.31362746875698	8.14701512221042	-0.306486854357295	0.14046244900541	0.500760820920022
Merged-chr17-8868088-4	chr17	8867580	8868580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	18095.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.25286117205941	4.16347451137731	4.09522631423085	3.940295087355	3.61048113857783	3.81229025942217	-1.18486216457478	0.0222633323721565	0.173356481379599
Merged-chr18-78015561-2	chr18	78015061	78016061	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 32 of 43)	intron (NM_001195633, intron 32 of 43)	41707.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	3.47149299278115	3.75879372571919	3.43125983074004	3.46374728068453	3.50685304290524	3.7676450762854	0.0409648190428145	0.944680251452423	0.98786315338489
Merged-chr12-82257907-2	chr12	82257407	82258407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-53442.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.61168788822494	5.66360573554757	5.32321415672921	5.44104101681935	5.50453223872058	5.32175403152434	-0.230456991755919	0.497612306698266	0.833761803306215
Merged-chr15-89355699-4	chr15	89355204	89356204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271601)	promoter-TSS (NM_001271601)	-15.0	NR_073376	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	7.17465872073465	7.33635587399897	7.22113859307948	7.49949510084028	7.66775966521974	7.77217388135074	0.589492493896766	0.0114169964800135	0.110424201741438
Merged-chr9-65200790-4	chr9	65200293	65201293	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13897.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	4.93730532603897	5.0719835682311	5.10906642317755	4.78995978218261	4.7130505153088	4.89844142496901	-0.538082239096034	0.158718405901274	0.530537931856658
Merged-chr7-16052039-4	chr7	16051564	16052564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19781.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.07455954385312	5.92874959298978	6.12315115655319	6.22119241482678	6.41531439030025	6.16223986572495	0.405414916263958	0.159432623347536	0.531636309246326
Merged-chr15-88733332-4	chr15	88732834	88733834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	885.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	7.42870258283319	7.23174336702913	7.56712452257887	7.65293774854066	7.07381005755678	7.35161448587343	-0.0479914665274332	0.859452837343819	0.967337838027602
Merged-chr7-45521312-4	chr7	45520645	45521645	+	819.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 11 of 13)	intron (NM_001045555, intron 11 of 13)	5123.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	6.28777787981015	6.3722772581469	6.28697476042715	6.08477149586097	6.14053382098471	6.32743063688349	-0.228650278591127	0.411808014809012	0.784058789928112
Merged-chr11-58093991-2	chr11	58093491	58094491	+	732.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9979.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	5.42666596471633	5.11188547766404	5.07461835474941	4.21388724426178	4.35178899037767	4.61413666135713	-1.92098789198637	7.32445278090681e-06	0.000307338914268126
Merged-chr3-154285967-2	chr3	154285467	154286467	+	565.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	44593.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	3.52688275234459	3.44052019530611	3.69628327068103	3.57896782013096	3.697044373561	3.44466691527247	0.115836696894405	0.840590289443753	0.962819298477451
Merged-chr5-113772734-4	chr5	113772244	113773244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016926)	promoter-TSS (NM_016926)	-68.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	7.43250280647311	6.99785755887677	7.41842318220716	7.59001450041203	7.21801887983001	7.56384120347246	0.248977389244515	0.352287314385235	0.739912735829736
Merged-chr15-31350128-4	chr15	31349635	31350635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	17624.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	6.71406046037537	6.68494219495611	6.56746244364905	5.97867456941793	5.81661846855564	6.01320303312387	-1.21592313055697	1.10454849825856e-05	0.000435992748781302
Merged-chr11-114965091-2	chr11	114964537	114965537	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4620.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	6.109912385449	5.82594479521721	6.00586651469243	6.10195732457409	5.95640518475653	5.9502897441688	0.0357802012196955	0.904840108172459	0.978165789675139
Merged-chr2-14242581-4	chr2	14242049	14243049	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	intron (NM_008625, intron 2 of 29)	13135.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.92670866985535	5.92982316451239	5.98014443729864	6.14159887975894	6.3840230002426	6.1531115590468	0.505307582875576	0.0804972346186825	0.375478544798365
Merged-chr5-139705331-2	chr5	139704821	139705821	+	800.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	31012.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.75331767942568	3.90635760382507	3.97665564786853	3.88098117693317	4.04982656741782	4.09144017573333	0.4016372460052	0.427453438902532	0.794365779350231
Merged-chr3-31138649-4	chr3	31138166	31139166	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11254.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	3.66193054951168	3.74316221122727	3.69147311831753	3.79043954647414	3.91402455657147	3.76207081819659	0.42145769030539	0.424777749190666	0.792842237654933
Merged-chr3-96294022-4	chr3	96293520	96294520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010186)	promoter-TSS (NM_010186)	-51.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	6.24573308560243	6.26557919502218	6.42222095676286	6.65577243771763	6.72376000588645	6.57052538800288	0.565199589393036	0.0325287336789063	0.21935739297791
Merged-chr17-64593008-2	chr17	64592508	64593508	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8641.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	6.04604896506372	6.0805200713069	6.3745676704662	5.85451624046665	5.66142110300555	6.19320927432625	-0.449396428688779	0.165436922934206	0.540457255090716
Merged-chr6-140624794-4	chr6	140624287	140625287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-122.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.85264338929949	6.84128111424308	6.97749857318282	7.18868980375383	7.4656449813717	6.99418388901812	0.536399232667558	0.0388388506712507	0.244380884606032
Merged-chr11-70652562-2	chr11	70652062	70653062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 2 of 2)	intron (NM_011072, intron 2 of 2)	2088.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	4.25392329176462	4.07720255013591	4.10193436550049	4.400770558366	4.18706806768414	5.06756900477099	1.15077189571539	0.0277948004540691	0.198997569797125
Merged-chr1-191085104-4	chr1	191084519	191085519	+	971.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198654)	TTS (NM_198654)	-13395.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.9214201166756	6.67161545695766	6.66428264068132	6.95626376313778	6.93992569344027	6.7719117940764	0.208188672302582	0.419093050250766	0.788801788481746
Merged-chr5-45669815-4	chr5	45669299	45670299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	-91.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	5.48941047224803	5.84151045552079	5.44007484842839	5.60043459804702	5.77090675782579	5.3423326168917	-0.0303409028535112	0.931624699658824	0.984929477721491
Merged-chr2-57237242-2	chr2	57236742	57237742	+	865.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145820)	promoter-TSS (NM_001145820)	-436.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	5.63674201998285	5.71264418957765	5.65235575746252	5.59585415707633	5.59775691268029	5.45625715151842	-0.207565762349528	0.512967223854824	0.842238777428315
Merged-chr4-118360963-1	chr4	118360463	118361463	+	549.0	f0_balb.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	964.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	5.97480871255298	5.98396203930317	5.5349694102889	4.6877771282065	4.48131863211274	4.93026652978609	-2.41111322517148	5.16280749922319e-10	5.90903557627735e-08
Merged-chr4-117134039-4	chr4	117133537	117134537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-74.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	7.4325164688784	7.32288695849807	7.19804203141151	7.38477522570869	7.18152775790599	6.93142793280717	-0.207850770271767	0.413932321806705	0.785473901705954
Merged-chr15-94544484-3	chr15	94543977	94544977	+	701.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172437)	promoter-TSS (NM_172437)	817.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	6.68626451651662	6.70769401273339	6.89429813895934	7.17001454834806	7.44179911820919	7.211733545009	0.801798889802988	0.00132715838023518	0.0224771411566475
Merged-chr9-58249760-4	chr9	58249204	58250204	+	978.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311088)	promoter-TSS (NM_001311088)	82.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	7.07280040019468	7.32401162937635	7.39084708205221	7.49063903471055	7.60802167278258	7.39463918885969	0.354431651439349	0.140684011717554	0.501153454716047
Merged-chr14-55098197-4	chr14	55097686	55098686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001303502)	TTS (NM_001303502)	3402.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	5.66404263842132	5.4584372456129	5.57317657268941	5.16840560278368	5.1688306892172	5.37862109860413	-0.653484177275569	0.0549913906013287	0.301292133347953
Merged-chr11-23307782-2	chr11	23307282	23308282	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 1 of 79)	intron (NM_001190401, intron 1 of 79)	887.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	3.91136814090137	4.13327281191257	3.9325150343102	4.09789959108052	3.94192820121147	4.09898679604479	0.126065782292225	0.799665595161497	0.952265144270204
Merged-chr8-105346203-2	chr8	105345703	105346703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1767.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.23636704400789	6.11514476492929	6.41845399000391	6.7634663730992	6.36488611295378	6.40397436114743	0.441020791569005	0.131678506661789	0.485260869937291
Merged-chr18-65683128-2	chr18	65682655	65683655	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-15113.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.26447974651826	6.21512568242553	6.60979562953423	6.46865547771754	6.3977554710181	6.23319936117004	0.0187257224239265	0.948321890871454	0.988083630162243
Merged-chr3-68709468-4	chr3	68708959	68709959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18035.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	4.73440471479355	4.55339990661007	4.49280890083244	4.70710362040226	4.91161094642007	4.42331377825373	0.254180489088817	0.560870402665211	0.865331098437164
Merged-chr3-152122820-3	chr3	152122310	152123310	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	43090.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	2.89837516006471	2.83754411294193	2.72339372197704	2.49698998380948	2.29090618511306	2.46946867703918	-2.76222136277067	0.00260969243661236	1
Merged-chr12-102398166-2	chr12	102397655	102398655	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	41658.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.21339581102085	4.17770385396103	4.63116349307733	4.03435066358615	4.45172392893388	4.62274941507114	0.106252702501468	0.831959685530099	0.960547551840437
Merged-chr11-34771393-4	chr11	34770885	34771885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12520.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	6.86799288256461	6.83674460158145	6.85895119238654	6.79986180043007	6.90864861566102	6.81359329171384	-0.0143966699515954	0.952997376535432	0.989359300570295
Merged-chr15-86170853-4	chr15	86170346	86171346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-14882.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	7.93657545080818	7.78443699469397	7.76506556278379	7.79982540381087	7.72138450422192	7.66074846000538	-0.14812292255284	0.497244382287807	0.833500500620649
Merged-chr13-49173253-4	chr13	49172767	49173767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-14280.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	4.28947827211916	4.12069132969946	4.37812615613197	4.46965751902489	4.26737904667456	4.44498600501456	0.347787093976921	0.444256470167491	0.804143628616024
Merged-chr4-33282545-4	chr4	33282051	33283051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27760.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	5.90017660449115	5.96459588958895	5.67304464952058	5.98128768614324	5.90720245289216	5.79030778421137	0.0662113852292686	0.829361052459691	0.960024094417547
Merged-chr3-19216465-4	chr3	19215969	19216969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	28174.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	6.00239569323657	6.19769844294325	6.06431088157668	6.03107269081945	6.49096548024224	5.93482347595941	0.169280486478683	0.596438228850946	0.879911021114935
Merged-chr10-81621043-2	chr10	81620543	81621543	+	662.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181586)	TTS (NM_181586)	6279.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	2.61576661942622	2.82940530369622	2.82188979440383	2.8573124989855	2.85336004101938	3.33966286988189	1.31221745099903	0.0829316772546574	0.380987557121549
Merged-chr13-47043390-4	chr13	47042864	47043864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	-135.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	5.38879733828781	5.15745420438387	5.94896392798575	5.92164921876456	5.81922616514911	5.59196443572096	0.478646357801162	0.207145753637678	0.597920729067479
Merged-chr12-82240868-4	chr12	82240362	82241362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-70487.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.35485415873257	5.3618730455433	5.59017069140806	5.06381434136356	5.33446745116533	5.03583107173519	-0.534993676005628	0.140214499638694	0.500490762370556
Merged-chr8-23035456-4	chr8	23034971	23035971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	372.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	5.09978081827897	5.3558498728252	5.14690760102056	5.15232190482795	5.28845730016329	5.61982800770191	0.297005156153684	0.42167218850337	0.790574783375508
Merged-chr11-115078526-4	chr11	115078053	115079053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12878.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	5.52802957037461	5.62401484471902	5.36011204431014	5.32909229741739	5.30065144959293	5.08163306508316	-0.520195378056997	0.134370421414994	0.490080390334831
Merged-chr11-55469454-4	chr11	55468982	55469982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-270.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	7.9752081126249	7.67982700890389	7.51373967122333	7.58741385003776	7.56317447968701	7.24256780167613	-0.381414821915515	0.136027559646745	0.492905159738987
Merged-chr10-95514994-4	chr10	95514497	95515497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080560)	promoter-TSS (NM_080560)	-165.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	8.63505448026082	8.57149039121632	8.22459016907013	8.32511248613387	8.34835354935308	8.3309698075884	-0.223584966889834	0.311737468853703	0.706709113676409
Merged-chr8-126643731-3	chr8	126643253	126644253	+	802.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-50317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.22440468270243	3.58067510497649	3.37067698953388	3.66563328179633	3.43171056716446	3.66053314787365	0.663641679927266	0.2745012016221	0.671810361172288
Merged-chr5-115528282-3	chr5	115527759	115528759	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	21583.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	3.79196364504093	3.82364071199887	4.3841125400701	3.6215381018496	3.71158149897817	4.21622575374808	-0.454311515927264	0.442379124601691	0.803209439640776
Merged-chr4-101719419-2	chr4	101718919	101719919	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	2012.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	3.36855647437311	3.85325258861892	3.82670695981338	3.22105431442152	3.0060416268027	3.26732118324519	-2.1766853936716	0.00124874956395507	0.0214302828953895
Merged-chr7-4078447-4	chr7	4077917	4078917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-15213.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	3.69390067279981	3.90635528214281	3.88308263865962	3.55045633997442	3.71032519286593	4.13103963451762	-0.0574324008597302	0.918994488745939	0.98189651897125
Merged-chr10-25395553-3	chr10	25395051	25396051	+	863.8999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	-12817.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	2.95718068795787	2.96408575716405	3.11131769123365	2.90634394230763	2.67387542096666	3.07035195383476	-0.592734967142854	0.409916336993324	0.783037226945994
Merged-chr15-88509992-2	chr15	88509492	88510492	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90310.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	5.86258530057257	5.96023159961601	5.51066082945834	6.0104407539389	5.82578435601991	5.51196566697214	0.00700857433166469	0.983688778033584	0.996417452412872
Merged-chr1-134562616-2	chr1	134562116	134563116	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	intron (NM_152895, intron 1 of 26)	2438.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	3.09746730969061	3.32494370850006	3.41287265842465	3.19522608952716	3.39306698077111	3.14300453076598	-0.107390213861262	0.86793389372433	0.969513269284656
Merged-chr6-87838907-4	chr6	87838415	87839415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133934)	promoter-TSS (NM_133934)	-156.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	8.34610914635626	8.69196059736704	8.29787221723364	8.25748909796253	8.66498675293333	8.25796392824555	-0.0658602728180408	0.789593666121508	0.949278919326382
Merged-chr10-41530158-4	chr10	41529671	41530671	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016898, exon 6 of 6)	3' UTR (NM_016898, exon 6 of 6)	10671.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	5.98498897788832	5.87845466867598	5.95317158631742	5.94700605234012	6.36099612241166	6.03768762325184	0.345453386891114	0.259184485979679	0.656825376873982
Merged-chr6-100850792-4	chr6	100850288	100851288	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	17150.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	3.86256094986085	3.47881631571132	3.77074143551771	4.22692791518286	4.24808092505073	4.09632737102281	1.48248449816861	0.00550565967209387	0.0655761422839374
Merged-chr14-74732252-4	chr14	74731753	74732753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285423)	promoter-TSS (NM_001285423)	-44.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	5.66953950403593	5.64365209360124	5.67676057343528	5.54007210652646	5.58773386329762	5.51685692891502	-0.206941342466123	0.511199564752971	0.841331921585713
Merged-chr10-96371123-4	chr10	96370624	96371624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144917.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.19288695875566	4.0110072975025	3.87245479812101	3.99427434387912	3.93492021711368	4.04363485073886	-0.15150295661167	0.761971571391597	0.941355820818144
Merged-chr2-24306829-4	chr2	24306323	24307323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15627.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	4.73594262779305	4.54361905556768	4.45333770930688	4.36874131728561	4.21075753060637	4.3428456031158	-0.727507509039902	0.0993423937294664	0.420216658911161
Merged-chr2-60821863-4	chr2	60821369	60822369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59569.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.74846410925038	7.85463623433371	7.26540006232208	7.61549867055379	7.53882529848255	6.9963269922773	-0.34149842113776	0.245146978939007	0.642381314494918
Merged-chr1-185224854-4	chr1	185224359	185225359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	MT2A|LTR|ERVL	-18067.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	5.36440396530857	5.2025845065218	4.9508448798571	4.83777598559731	4.86644551634288	5.12239045979476	-0.537795335182616	0.162391359627126	0.535842287006085
Merged-chr12-102501230-4	chr12	102500736	102501736	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31326.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	2.83649950041125	2.80869376960851	2.83098684653639	2.59401327085494	2.33314817715262	2.65770958617767	-1.76791975345506	0.0353731916435125	0.23089277765921
Merged-chr1-105803091-2	chr1	105802591	105803591	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	22368.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	3.04675313795073	2.96918209076757	3.35413030094836	3.30905272112261	3.2852833566706	3.52799846132355	1.03105605962684	0.115590540830624	0.4539389145476
Merged-chr12-3893881-2	chr12	3893381	3894381	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2137.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.61380477852194	6.96104005194794	6.50220990767805	6.0098656007536	6.13572313997439	5.77737783226724	-1.18216211551063	0.000117663149923604	0.00325482559137075
Merged-chr9-4309690-4	chr9	4309200	4310200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026276)	promoter-TSS (NM_026276)	-43.0	NM_001164574	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	7.86140934400281	7.99544123405977	7.69481742355685	7.80187027954824	8.16729805664039	7.78705227126046	0.110266629729701	0.648934371783295	0.902009186178998
Merged-chr4-133138666-1	chr4	133138166	133139166	+	695.5	f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	(TGG)n|Simple_repeat|Simple_repeat	8033.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.72216168007758	5.86053670969223	5.94376218834306	6.24571831736739	5.99125887691702	6.2784402183406	0.572602665568448	0.0575572518110522	0.309721516438856
Merged-chr12-3344411-4	chr12	3343917	3344917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20715.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	7.3964180465956	7.1574540678588	7.352715496834	7.68070237047729	7.61837643834602	7.53481975692892	0.455972830639577	0.0479893660481832	0.27774216944684
Merged-chr4-47011158-4	chr4	47010650	47011650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19436.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	4.74951585934639	4.94745101962754	4.69590133721823	4.28268178402083	4.33610663392598	4.42811834098292	-1.13530751174307	0.00774008279954374	0.0840449966833401
Merged-chr17-26068917-3	chr17	26068417	26069417	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162868, exon 1 of 14)	exon (NM_001162868, exon 1 of 14)	260.0	NM_001162868	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	4.13014766344946	4.04644297808436	3.82341736862159	3.72774937735837	3.8734030074679	4.0431244952194	-0.396557705786654	0.446157192242801	0.805674023441533
Merged-chr2-165917411-4	chr2	165916909	165917909	+	976.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-32571.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.414943315212	7.38476351412697	7.02672918170673	7.59873999081489	7.84242502298523	7.01223263265196	0.364090170116794	0.22666672949356	0.621596639236046
Merged-chr10-80139030-6	chr10	80138539	80139539	+	954.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036582, intron 1 of 10)	CpG	328.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	3.7521244633279	3.4632881077538	3.51246825743616	3.28948199552256	3.19578951041593	3.10921594554153	-1.51313276532166	0.0174760990016089	0.147584618464008
Merged-chr10-41473917-4	chr10	41473413	41474413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2401.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	4.93918814672305	4.96126261691653	5.00137834039493	4.81761686166487	5.36711532553477	5.03095469492675	0.295580483292668	0.455743024375444	0.811115753793496
Merged-chr15-6413026-2	chr15	6412526	6413526	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	26278.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.91952058386629	4.60510895540044	4.39707188175083	3.91457236089275	3.88557596731434	4.29687180390506	-0.833884536059437	0.122015973262889	0.467263673750848
Merged-chr8-123373743-4	chr8	123373253	123374253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	42.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	8.67039383152693	8.8493335376332	8.43272461069054	8.56120296639163	8.69943174388612	8.25188223790883	-0.197632721938195	0.408840103687071	0.782383854304252
Merged-chr7-98815330-4	chr7	98814810	98815810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19802.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	6.89841519222697	6.9596618594889	6.69599209150864	6.70119539249618	7.26700811293327	6.89486824766864	0.19097367326602	0.500128040132711	0.834921806675451
Merged-chr2-32494633-4	chr2	32494140	32495140	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-40719.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.71222421041459	6.85101303419442	6.26205284025152	6.76590765488439	6.73964291771299	6.4272388465004	0.0240141989390252	0.935994640938716	0.986014061025137
Merged-chr9-62894673-4	chr9	62894186	62895186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32662.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	4.95479506091865	4.93072832788447	5.16509044818887	4.94561391940234	4.97520417408894	5.13268038370455	0.00476611101411926	0.989831621111286	0.997611022725407
Merged-chr16-33753223-2	chr16	33752723	33753723	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-40814.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.57317004750784	3.60979254770288	3.69817195145614	3.62720675595716	3.61255935606495	3.66470394293456	0.030617086054466	0.955240352803035	0.98974202431386
Merged-chr8-11474520-2	chr8	11474020	11475020	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B3|SINE|B2	-3409.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.99154603562598	5.00427697985261	5.15611935246193	5.58235397525516	5.11380928760018	5.54649038893904	0.759751856066415	0.0426869359428174	0.259054377210266
Merged-chr8-72136894-4	chr8	72136416	72137416	+	897.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	1624.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	4.27410174987313	4.24397829797826	4.18034383961533	4.25508337784632	3.89063923573115	4.15523493687684	-0.374370702156755	0.439125481418752	0.80095471312154
Merged-chr8-122913392-3	chr8	122912898	122913898	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65024.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.00279847811691	4.83959347358095	4.76251318480019	4.81416521259019	4.85075818567164	4.94155926833715	-0.0259878645199486	0.946482898182886	0.988002063841177
Merged-chr9-94703638-4	chr9	94703144	94704144	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	33752.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.06012385734085	5.15701001798138	5.61576347097025	5.50140226057757	5.25293391181817	5.43561379140497	0.218123313844944	0.560342812426908	0.865206445804495
Merged-chr17-73395004-3	chr17	73394505	73395505	+	868.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	4291.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	4.6013277558372	4.6002464343251	4.52915095231175	4.12672483810102	4.40739544449682	4.33699714910997	-0.712753921445944	0.108847639560631	0.44079363530285
Merged-chr14-55592333-2	chr14	55591833	55592833	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 2 of 20)	intron (NM_194346, intron 2 of 20)	591.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	5.14309476293608	5.05319249232311	5.6629256037243	5.35158566190679	5.33535961042043	5.463697366453	0.161955316912596	0.66798312020679	0.908976375106763
Merged-chr5-32930964-4	chr5	32930451	32931451	+	962.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 25 of 42)	intron (NM_001025426, intron 25 of 42)	67230.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	4.19930783288156	4.23409780015887	4.40070867566432	4.07252670200874	3.95995848025415	4.21178772941941	-0.558794519568963	0.239656502860389	0.636615320201993
Merged-chr1-38128623-2	chr1	38128123	38129123	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359288, intron 1 of 25)	intron (NM_001359288, intron 1 of 25)	1043.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	4.54584393984133	4.75883392863009	4.59473716041134	4.69674278422406	4.56469173735164	4.81550294668677	0.113788431832017	0.78360805191219	0.94726085620041
Merged-chr6-124997521-3	chr6	124997039	124998039	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	819.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	5.07599010947192	4.79541343264082	5.48628630525704	4.37875248711979	4.14068597360723	4.29325410685155	-2.08410830373342	7.54873638238722e-06	0.000314372000453291
Merged-chr1-191120155-2	chr1	191119655	191120655	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	21741.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.01677230293844	6.69452189928569	6.72043780776888	6.10396974501202	6.27912303375843	5.89183020283487	-1.14300780845058	0.000106640488196851	0.00299370504112133
Merged-chr5-64241982-2	chr5	64241482	64242482	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11625.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.92362096750441	7.03752264520665	6.88713668342344	6.45137634665765	6.86326590882283	6.70267410816374	-0.409652449504851	0.124584431391741	0.472295838864822
Merged-chr5-105292423-3	chr5	105291922	105292922	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	1277.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	5.08670949007057	5.10042469813793	5.1131840279186	5.55680735810079	5.52924316109727	4.91197307679583	0.562181099721095	0.146780848658878	0.511168160348552
Merged-chr11-70038278-4	chr11	70037768	70038768	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15856.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	5.68606421390464	5.62489286603276	5.66798357166965	5.96411125643885	6.38555665808904	5.83835023290674	0.778426903582902	0.0171402252421127	0.145709426026329
Merged-chr7-55784729-4	chr7	55784235	55785235	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-9390.0	NM_001360874	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	3.30271240237217	3.0245737360082	3.21298930267529	3.14606549626588	2.93986527782478	3.22817370568886	-0.348007545207603	0.601168663949489	0.881884913086671
Merged-chr19-12012432-4	chr19	12011953	12012953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24287.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	8.07488739172568	8.46228410139259	7.83698617350215	8.30378319433481	8.65664283993174	7.9685025865558	0.266232369655965	0.351491581924294	0.739323833988642
Merged-chr11-118178356-3	chr11	118177883	118178883	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	34359.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.54655678293889	3.2571540220484	3.68379144935728	3.47683006887176	3.13623769323756	3.75266215156971	-0.107681382294966	0.869030954301274	0.969772902205443
Merged-chr6-145654545-2	chr6	145654045	145655045	+	715.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38582.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	2.84076211127586	2.67701873145659	2.77936983747975	2.78363504442772	2.51263926595386	2.53000709696316	-0.836865877343017	0.283084274956022	1
Merged-chr5-23842502-2	chr5	23842002	23843002	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025394, intron 1 of 2)	PB1D10|SINE|Alu	1643.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	2.14782328639808	2.01104332079822	2.21140422951502	1.94242853403909	1.8443433102561	2.02281788732467	-1.60162372654877	0.104406694183764	1
Merged-chr13-54818968-4	chr13	54818447	54819447	+	905.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29542.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	5.70889399615282	5.10724850445266	5.87654743699086	5.78965732336649	5.92307955987402	5.60760610682255	0.344853505471691	0.359820494943725	0.74614615890951
Merged-chr5-140502468-4	chr5	140501953	140502953	+	935.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3156.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	2.91991782393628	2.91102388725806	3.26529770751913	3.2853171810114	3.06698291321574	2.98873297381539	0.378844163301762	0.583561214065895	0.874081248199794
Merged-chr2-52965223-3	chr2	52964724	52965724	+	879.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	107356.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.28595457780409	4.11709634187308	4.59818150566892	4.31015976081317	3.93599811129784	4.26100140799332	-0.452109092071001	0.36393840169388	0.749357676652347
Merged-chr2-148731839-3	chr2	148731327	148732327	+	802.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	593.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	4.97322639291348	5.02998948580492	4.6640548994334	4.74671945024152	4.86155489160494	4.7727002034589	-0.250501198338784	0.530497876613645	0.851186241872543
Merged-chr12-83687192-2	chr12	83686692	83687692	+	944.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362271)	promoter-TSS (NM_001362271)	-960.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	5.51803710846479	5.683595941347	5.47285529973927	5.9095363739461	5.90271960908967	6.13137095291045	0.739748898863782	0.0190403395112194	0.156366815046343
Merged-chr15-86210371-2	chr15	86209871	86210871	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.45271048820085	3.09280102010456	3.56796827331954	2.90035609638672	2.91331532991428	3.27694636309406	-1.49660226757813	0.0356362912433174	0.231893682785169
Merged-chr19-10173655-4	chr19	10173169	10174169	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9219.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	5.91682586660463	5.9343842163068	5.90371249711018	5.30229860117433	5.46673273694869	5.55395727334728	-0.880553091591423	0.00533956378645851	0.0640285954090849
Merged-chr5-29569086-4	chr5	29568581	29569581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133907)	promoter-TSS (NM_133907)	-161.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	6.08691216043928	6.2599809847573	6.01606223280389	6.60655456120945	5.92015549608179	5.79566370087724	0.0635530817823927	0.857307332894532	0.966740687033138
Merged-chr5-148511889-3	chr5	148511392	148512392	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	39781.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.32404757850547	4.1976770657509	4.51522659862494	4.31160901497623	4.17502419210425	4.58063609817231	0.0296237839077473	0.949447313760886	0.988195309248553
Merged-chr11-97985488-4	chr11	97984974	97985974	+	951.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	972.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	3.48011530229414	3.20996993219426	3.26585869727345	3.34690810747636	3.47706996768895	3.33832118660551	0.256531090227821	0.676222833654528	0.912421384593547
Merged-chr11-120038677-1	chr11	120038177	120039177	+	1000.0	f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	3104.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	3.04357110666834	2.96456262344139	2.99796406172857	3.09163523913245	2.95739919851036	3.07043099034489	0.16393484397986	0.804722884259067	0.953651704501661
Merged-chr10-118048448-1	chr10	118047948	118048948	+	592.0	f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-93339.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.43506740627313	3.23522369499721	3.49120785500092	3.50237424726118	2.96552733401435	3.50936177417275	-0.159747139197515	0.813006240875963	0.955867056050517
Merged-chr15-84983255-5	chr15	84982754	84983754	+	699.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	4717.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	5.59632805058799	5.69536447869381	5.68752838685442	5.85351561237579	5.62793696615842	5.61308545376369	0.0819001333790438	0.795920667586713	0.951374777848283
Merged-chr4-124802080-4	chr4	124801584	124802584	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-465.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	6.61426734348843	6.70292437867031	6.79821819122689	6.49283378243466	6.76955728903227	6.98023134654588	0.0848786695954665	0.756557159719818	0.939629132869937
Merged-chr5-148542399-4	chr5	148541909	148542909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	9264.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.76968076972803	6.64316144028876	6.73983468823149	6.79521067212098	7.1211859976547	6.78294531667937	0.313985522796506	0.232217511070981	0.62849188983848
Merged-chr4-152011215-2	chr4	152010715	152011715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	2324.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	5.55074187351951	5.58739283922224	5.02026580754932	4.86664731324143	4.69621346108799	4.97401256943764	-1.21683097498377	0.0020272958040052	0.0312789225402679
Merged-chr13-104817075-4	chr13	104816567	104817567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026072)	promoter-TSS (NM_026072)	-103.0	NM_026075	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	7.57972324982992	7.73578429232403	7.47958423036795	7.82212798865763	7.87927768763481	7.35934048857951	0.159034103825763	0.532569424054337	0.851971173271146
Merged-chr14-93729073-4	chr14	93728561	93729561	+	862.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	161608.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.96470753228791	1.90201413369624	2.01432264441722	2.09538102931541	1.97263419856203	2.22225848366573	1.08664026634194	0.246367723728666	1
Merged-chr2-121414436-4	chr2	121413941	121414941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153075)	promoter-TSS (NM_153075)	539.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	7.98793421503117	8.18477616285987	7.63929014810299	7.83125637951173	8.0137825862864	7.83136698607417	-0.095631020413434	0.698235498323738	0.920276248984972
Merged-chr6-88821086-4	chr6	88820584	88821584	+	892.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166249, intron 6 of 7)	intron (NM_001166249, intron 6 of 7)	20851.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	3.83402811462566	3.51314564060683	4.21365487954302	3.88905481795596	3.90525412202916	4.0657280932253	0.231970723664596	0.682620363676446	0.915155649724165
Merged-chr5-24602719-3	chr5	24602240	24603240	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-738.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	3.70295128287681	3.9163741208038	4.07355730740435	3.47125638128532	3.28900746767799	3.77405745691336	-1.32831124290854	0.0261802796537826	0.192122972860179
Merged-chr10-19006293-1	chr10	19005793	19006793	+	567.0	f0_balb.idr	intron (NM_001166402, intron 4 of 7)	MIRb|SINE|MIR	5670.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.50982442970179	2.56682151003497	2.32601707789529	2.67291040729645	2.36638610289991	2.85006132807888	0.960487717964732	0.26747255213028	1
Merged-chr17-35821167-4	chr17	35820644	35821644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-569.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	6.257557129642	6.16634605223977	6.00022424147467	6.36190951495663	6.19435530899638	6.43295282334981	0.288583367761643	0.313101300359527	0.707746598467115
Merged-chr6-119472869-4	chr6	119472350	119473350	+	858.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5639.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	4.52073286590076	4.4501882481941	4.7744488136306	4.75000295692694	4.39382273377334	4.6114038305361	0.0202579069828927	0.962979570252141	0.991018409557203
Merged-chr7-118699035-4	chr7	118698512	118699512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	6726.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	4.29102031597541	4.38610373454025	4.38570454137239	4.6883739490831	4.35996348811795	4.31775484030788	0.293066807797265	0.51487711203462	0.843294583748531
Merged-chr16-87495918-4	chr16	87495443	87496443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009840)	promoter-TSS (NM_009840)	-74.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	7.63584805350242	7.7471518307324	7.79481062407084	7.59105320698508	7.55809643086123	7.526083461223	-0.240246381078472	0.272054255035674	0.669529543069504
Merged-chr10-40132484-2	chr10	40131984	40132984	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9770.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.46492925421867	3.45224980852723	3.49965684631866	3.41060436192369	3.39758612222695	3.40551656220824	-0.253056607253835	0.661886891345176	0.906495637422278
Merged-chr14-120278454-4	chr14	120277946	120278946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2777.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.01981294922474	8.02488423700895	6.86358008700174	7.61443141115575	7.66801672914326	7.23358236533773	-0.322661753458785	0.56440379915925	0.866344709792103
Merged-chr17-25117427-3	chr17	25116930	25117930	+	832.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1463.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	3.41439151093662	3.4684145558709	3.65968388517971	3.24572900199332	3.12747569843707	3.06138059641435	-1.48908191783627	0.0207693047608653	0.165533746220506
Merged-chr8-125650313-2	chr8	125649813	125650813	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19505.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	3.04607935752116	3.14624878437144	3.19473760324663	2.93466689419839	2.59914541874272	2.97907867273202	-1.40351792632805	0.0619816602602416	0.323285274677752
Merged-chr16-16871622-2	chr16	16871122	16872122	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011624, intron 1 of 17)	intron (NM_011624, intron 1 of 17)	886.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	5.65258098448612	5.80310151466262	5.96893124257517	6.0622703744599	6.13846965350106	6.13852737953526	0.538883069051546	0.071109600801679	0.349821902773212
Merged-chr17-80479845-4	chr17	80479334	80480334	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 1 of 21)	CpG	619.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	6.03768636833951	5.57536120156009	5.65234470402979	5.82561804069372	5.54202122844814	5.65975649646656	-0.180200139363773	0.595894544477368	0.879742965115467
Merged-chr3-22138570-2	chr3	22138070	22139070	+	635.474976	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	61918.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.42050009082647	3.22221323858679	3.50413480564374	3.32250704496613	3.26086975767733	3.52213999666613	-0.0627167232815684	0.918281780337851	0.981747877135909
Merged-chr3-136347518-4	chr3	136347011	136348011	+	808.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-21445.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.12098373936777	2.98277252027887	3.10852276868892	2.96982796075765	3.14205353671772	3.18005460008205	0.130064241970208	0.84326423131132	0.963333610101354
Merged-chr11-6519806-4	chr11	6519297	6520297	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1161.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	5.44484637099485	5.83210694780035	6.11683250717555	5.93780272724106	6.08257865262021	5.78888686025433	0.233841032005169	0.497063628089275	0.833442633454308
Merged-chr17-67339793-4	chr17	67339270	67340270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	14689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.03344942574879	6.09453251257369	5.73157454835496	6.0867797880941	6.4058450830314	5.95319349979449	0.34576531452936	0.278334395649675	0.675613258777385
Merged-chr3-84229126-4	chr3	84228611	84229611	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-8234.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	4.62258037956729	4.6157047666465	4.32766627476188	4.36309159292375	4.12064726793859	4.25550583237716	-0.75921265539749	0.0951918354286541	0.411148363215922
Merged-chr15-102460702-2	chr15	102460202	102461202	+	657.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170911, exon 3 of 4)	exon (NM_001170911, exon 3 of 4)	1532.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	5.10357023876432	5.32861783168367	5.26955134125176	5.45594967385368	5.29723410711456	5.45408307628341	0.322806891825228	0.351684599893654	0.739403630741215
Merged-chr16-44766565-2	chr16	44766065	44767065	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	829.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	6.67838894319926	6.79755662082217	6.6946352946849	6.56407926854108	7.09587983437804	6.56641401570597	0.0880115527148245	0.761491485421414	0.941258867861232
Merged-chr15-98937032-4	chr15	98936579	98937579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	6.17636264767851	5.96321968524078	6.34685981249628	6.46121451743037	6.62665516199689	6.49735344939079	0.6141626111252	0.0302187184325762	0.209938976650063
Merged-chr2-35162814-4	chr2	35162314	35163314	+	876.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 31 of 44)	exon (NM_012018, exon 31 of 44)	30580.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	5.85131312620121	5.73658365190922	5.69061837451938	5.57704688152285	5.63934660636609	5.61625854281911	-0.280726872695281	0.367536153392048	0.752471538099639
Merged-chr16-91851835-7	chr16	91851315	91852315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79815.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	8.10977451516442	8.06088684871115	7.80624052470145	7.81371627681705	7.92527888091992	7.72220438160791	-0.253396683165284	0.26186218738732	0.659718531523246
Merged-chr5-124616664-4	chr5	124616166	124617166	+	795.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 11 of 18)	intron (NM_026486, intron 11 of 18)	-12386.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	2.85615579291342	2.77790606083166	2.6624266675446	3.1893633074974	2.60464550936054	3.05417151196068	0.978692522827667	0.214837063617036	0.608043136777522
Merged-chr1-184736152-2	chr1	184735652	184736652	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3659.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	4.24570388085763	4.04908447435479	3.97790679640399	3.80926440806162	3.85710926659336	3.73132294479848	-0.9034093854362	0.0796246291362502	0.373195188533358
Merged-chr8-75097658-2	chr8	75097157	75098157	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 3 of 4)	intron (NM_010442, intron 3 of 4)	4039.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.66350067831489	4.51420504302616	4.9280572136133	4.67333016618944	4.40350190756792	4.81989412217577	-0.167303593652994	0.702067966038389	0.921734218784473
Merged-chr1-34844515-1	chr1	34844015	34845015	+	550.0	f1_balb.idr	Intergenic	Intergenic	-1465.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	4.9175931651154	4.94742270863687	4.64636282883023	5.07378200515141	4.95426587223359	4.75694349970392	0.190946471364394	0.631998564445279	0.895423667189341
Merged-chr11-63136393-1	chr11	63135893	63136893	+	791.0	f0_balb.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3590.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.16381249995875	4.3704656033401	4.43520109885967	4.13981438646281	4.03067245422327	4.24711033911888	-0.521305477510383	0.267328916324745	0.664612162584762
Merged-chr6-122804643-4	chr6	122804147	122805147	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15537.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	3.50715821168203	3.41546644306961	3.3486721764279	3.19720810571849	3.16556497979942	3.67966443515446	-0.253587028179347	0.692713886061303	0.91870248759071
Merged-chr15-12012649-3	chr15	12012153	12013153	+	798.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16646.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	2.99912675326095	3.08432218297194	3.099312767718	2.99444907462828	2.78029345288024	3.0556413252821	-0.555923229498816	0.418309560771941	0.788588731807313
Merged-chr2-153291382-4	chr2	153290883	153291883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008444)	promoter-TSS (NM_008444)	-33.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	6.55893132281384	6.83408418367274	6.05685790422328	6.38756291504516	6.43940518620124	6.23436367024949	-0.283873797410727	0.375330757772845	0.758646622209238
Merged-chr16-30188204-4	chr16	30187695	30188695	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79337.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	3.56366438453535	3.61557333522505	3.52486381667514	3.66806593098188	3.32818270302382	3.54117015227046	-0.198099243943323	0.733193551094888	0.932039456283818
Merged-chr9-105130990-1	chr9	105130490	105131490	+	589.0	f1_c57bl6.idr	intron (NM_029385, intron 2 of 2)	intron (NM_029385, intron 2 of 2)	815.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	7.18087977546417	7.4956931170209	6.95303939445395	6.75205490360969	6.69216721027438	6.18968697427235	-1.00751919043831	0.000946797147511055	0.0172462997044877
Merged-chr7-75667218-3	chr7	75666713	75667713	+	651.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-181125.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.98979495829906	3.92600382303722	3.81988942468448	3.69554255817718	3.42629806903115	3.50667309167581	-1.26620623896962	0.0233572430552519	0.179009807510491
Merged-chr10-93641219-5	chr10	93640719	93641719	+	703.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021320, exon 1 of 10)	5' UTR (NM_021320, exon 1 of 10)	170.0	NM_021320	57764.0	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	2.85005423648676	2.51051014993602	2.81750482210382	2.86302863161446	2.50743239616612	2.83051928849663	0.0383302783361648	0.961449837175699	0.990593338926641
Merged-chr14-73451827-3	chr14	73451322	73452322	+	661.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58227.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	4.68115910937314	4.76737531245552	4.83055070825718	4.47932282390684	4.85267711353225	4.7845800205021	-0.0880516491774797	0.831190203702423	0.960444904168444
Merged-chr2-103972113-3	chr2	103971670	103972670	+	969.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	1883.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	3.90036434048199	3.84691676772966	3.67994039717026	3.64467796527479	3.79516206239636	4.0442133803894	0.046317183526849	0.93184999351124	0.984954100169394
Merged-chr14-32086447-2	chr14	32085947	32086947	+	729.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104303)	promoter-TSS (NR_104303)	719.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	6.1670404788905	6.3564180416874	6.1026250772796	6.2222800727105	6.42673319110597	5.6651583861385	-0.0952377778702878	0.777922166524725	0.945257566403653
Merged-chr3-40950791-4	chr3	40950292	40951292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	CpG-9127	161.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	5.61806834756362	5.12028966127312	5.30882180130653	5.83627612093163	5.51193135593131	5.69321868788557	0.593969893859056	0.09872024096102	0.419119026985282
Merged-chr11-75152737-7	chr11	75152216	75153216	+	823.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	15436.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.61309785117721	7.70128868652581	7.58850369038995	7.72987790566036	7.59729117671083	7.46409120882621	-0.0462577701424542	0.837448545357873	0.962133986386607
Merged-chr3-22113917-2	chr3	22113369	22114369	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	37217.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.36632761805227	3.40662059054653	3.12217651892671	3.33512698083844	3.01304518818736	3.78176340330838	0.409728398451295	0.560446350277075	0.865236087802179
Merged-chr16-91599198-2	chr16	91598698	91599698	+	922.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1518.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	2.37720152112409	2.30878335980957	2.56169649661418	2.33837310611664	2.41878644887143	2.57391408970353	0.177918370495423	0.828376966697313	1
Merged-chr1-186182750-3	chr1	186182245	186183245	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65435.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	3.0447011721068	3.26210490891276	3.13136691258038	2.67609499414042	2.61117200472808	2.71231007879189	-2.75241539988593	0.000679076456226476	0.0133770345098704
Merged-chr6-82987250-1	chr6	82986750	82987750	+	563.0	f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	40328.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	2.93825557931249	2.9807784390575	3.04516650016419	2.95338194124239	2.94516943407312	3.17323661461977	0.165278548325245	0.805679813789599	0.953956034266138
Merged-chr15-64022479-3	chr15	64022040	64023040	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	MIR3|SINE|MIR	-24474.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.98497953984807	5.08895806571256	4.60936880828659	4.27381009568518	4.36056998218869	4.41030894007388	-1.38474418002796	0.00150891387597629	0.0248413063418101
Merged-chr14-19418182-4	chr14	19417688	19418688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	184399.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	8.21743642651959	10.042103688368	7.66771556539016	9.0329684794898	9.04182643463154	7.99763836017442	-0.421358630952325	0.677000771257658	0.91266256545023
Merged-chr15-81859610-3	chr15	81859087	81860087	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1261.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	8.54730553048477	8.65922923948139	8.47733336989115	8.57193021731828	8.90732656121089	8.53265745833873	0.168559113793333	0.446752472779995	0.806122541261987
Merged-chr12-84409010-4	chr12	84408519	84409519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007647)	promoter-TSS (NM_007647)	10.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	6.79034124038692	6.80118220791923	6.34520736985833	6.55199066332842	6.38693947420611	6.28054708213449	-0.415112098886983	0.149991416756418	0.516609804764046
Merged-chr11-115634936-2	chr11	115634436	115635436	+	994.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6641.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.76914705550751	5.27898575174593	5.50935304529979	5.52866993533731	5.43844731460017	5.7323792992116	0.0509786771329982	0.885070168197519	0.973538624783452
Merged-chr4-126105471-2	chr4	126104971	126105971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	L2c|LINE|L2	1514.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.16104650283574	3.9442163186972	4.28473871627981	4.20981292119021	4.18549771845654	4.35153309298252	0.323940448685883	0.496747965766592	0.833301172039567
Merged-chr13-114817518-2	chr13	114817018	114818018	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-719.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	4.58147507524816	4.72461477930904	4.46025732515064	4.83565706280133	4.71205093210904	4.61523996583019	0.298454241774027	0.472854919551711	0.820550293768681
Merged-chr5-105627295-4	chr5	105626807	105627807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72662.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.11481477355876	4.72219666010201	4.67637743058743	4.82229791286238	4.81192195288346	4.61569021775042	-0.230411461947188	0.581894127370369	0.873484978987509
Merged-chr5-123035677-2	chr5	123035177	123036177	+	792.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_153115)	TTS (NR_153115)	11339.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	2.85267031034441	2.77462994113524	2.79329392925751	2.72300061149502	2.63767619513708	2.86609667801695	-0.357010450129531	0.623217782738301	0.891344246843871
Merged-chr17-10350701-2	chr17	10350201	10351201	+	646.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26099.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.0347302453028	2.63546564469305	2.68144767719257	2.73872193178291	2.73357381553621	2.94176034448091	0.0223730932819504	0.976608165110622	0.994723308989508
Merged-chr7-31114619-2	chr7	31114116	31115116	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	710.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.29071748217365	4.20559499979983	4.22135171197426	4.32232651232551	4.02895263536295	4.28929561093276	-0.077170593376214	0.869317508064638	0.969788171765313
Merged-chr14-16366502-1	chr14	16366002	16367002	+	569.0	f0_balb.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	1296.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	5.82447360782682	5.92160897724191	5.83990818343796	6.01713116527388	5.90010751631875	5.82564983008419	0.0971666386643754	0.744694918863171	0.936032341688524
Merged-chr17-28722460-3	chr17	28721918	28722918	+	715.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	PB1D10|SINE|Alu	29850.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	3.61778966664944	3.78019882475637	3.71764804375036	3.39939014653971	3.68818764308594	3.7363730227203	-0.310485070488225	0.582821349743528	0.873826743013405
Merged-chr10-80156910-2	chr10	80156410	80157410	+	641.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7228.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	3.44270713937765	3.26120949252571	3.72692230626384	3.66692718098617	3.19943110031336	3.88854801696645	0.438603191772384	0.502830031423732	0.836691193058519
Merged-chr14-32931904-4	chr14	32931418	32932418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59464.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	5.71067959408232	5.45952747993125	5.18833669200364	5.1358686428826	5.20969122873159	5.03571381028456	-0.687629958497402	0.0623521795949032	0.324521873896803
Merged-chr4-130916860-4	chr4	130916377	130917377	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	3543.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.91996393884881	7.24365430445987	7.24875887634853	6.92510478439957	7.19027888922544	7.22622537562643	-0.0357026043544098	0.890153436727876	0.974449245668373
Merged-chr5-32748851-2	chr5	32748378	32749378	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-2536.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.51383298372452	3.72384791823521	4.05737576108783	3.50811043062804	3.43310934589313	3.55300911567149	-0.971166571126712	0.0990598281707535	0.419687756705699
Merged-chr1-180192018-2	chr1	180191527	180192527	+	546.5	f0_balb.idr|f0_c57.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	1458.0	NM_001163290	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	2.50498544850464	2.36929604127733	2.64236346872147	2.46237468788049	2.44267676538364	2.33197643789662	-0.55395616612424	0.501219847118511	1
Merged-chr1-95591267-4	chr1	95590768	95591768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	76326.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.05395365611031	6.17688365403611	5.70763656408029	5.95526108992936	5.80440938071611	5.95093562778516	-0.186619293154608	0.552984711080242	0.862001008628202
Merged-chr11-119267230-2	chr11	119266739	119267739	+	884.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-724.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	4.9200711284288	4.52777880517909	4.06315441690054	4.61705971906464	4.28119643390639	4.24345400269886	-0.409562758342215	0.432933954492824	0.79758551656855
Merged-chr13-119614767-3	chr13	119614290	119615290	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9029.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.23649174965051	4.5322560424859	4.39505875212366	3.8790591155038	4.0328495794924	3.94947555564987	-1.22812921854944	0.0121250672989477	0.115098341476419
Merged-chr13-58128113-4	chr13	58127559	58128559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	497.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	8.26764742145202	8.37737193049361	8.14086987881451	8.18229339091272	7.93243829432102	8.13549409403755	-0.259752021731076	0.234612830482574	0.630738593875039
Merged-chr1-64597763-4	chr1	64597316	64598316	+	775.982117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	19352.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	6.45015780114665	6.26402106470831	5.83370261127111	6.3179076479582	6.44606528600695	6.68604406975891	0.435576314909928	0.169464989885062	0.546370379971568
Merged-chr7-4062992-6	chr7	4062388	4063388	+	877.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178611, intron 1 of 6)	intron (NM_178611, intron 1 of 6)	316.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	7.05572896149956	7.3174698819327	7.41800978090533	7.18618020952046	7.44582622865633	7.43426678653189	0.138632412150993	0.579113851583817	0.872437416842052
Merged-chr2-101177982-4	chr2	101177479	101178479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-446769.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	5.15525345483529	5.10109781297858	5.36978256963035	4.85183875838669	5.12001965697936	4.87547873623239	-0.510350193464161	0.180373374494689	0.562179561184932
Merged-chr4-97754389-4	chr4	97753786	97754786	+	796.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-23340.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.19886167058165	5.18697545940201	5.26682160035123	5.98356954330781	6.07947310968655	5.69534571046295	1.36176901641996	3.61514806361261e-05	0.00120131485653785
Merged-chr17-25834189-2	chr17	25833689	25834689	+	960.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-828.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	6.01299855539373	6.25538120395685	6.05462687130459	6.32156575488582	6.47729008714419	6.38511757509389	0.469800625866992	0.0961236399959799	0.413389282447049
Merged-chr7-126796589-3	chr7	126796098	126797098	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 5 of 9)	exon (NM_001177308, exon 5 of 9)	2580.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	3.43193986041183	3.57199625719203	3.81272504881447	3.64027285337565	3.46849234762869	3.9719212057978	0.316233255647239	0.592811951829748	0.878261820522927
Merged-chr2-31069718-4	chr2	31069243	31070243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	MTB_Mm|LTR|ERVL-MaLR	26757.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.59048544337811	6.58955842580476	6.38737027953695	6.48273561305224	6.28051967534209	6.5899125756603	-0.136677163471597	0.618844355623843	0.889515655407396
Merged-chr1-86502773-2	chr1	86502273	86503273	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23784.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	2.02078535501017	2.00081361104581	2.09047770948158	2.28850807919397	2.28239714483931	2.49305552870299	2.54209569400781	0.00946392877750055	1
Merged-chr8-70867815-2	chr8	70867338	70868338	+	989.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026964)	TTS (NM_026964)	5652.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	2.01370687870683	2.01184522918695	2.19814174471484	1.87993136015634	1.82148449642838	1.80969402192491	-2.2065733532706	0.03759254217691	1
Merged-chr5-88953274-3	chr5	88952850	88953850	+	836.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 2 of 26)	intron (NM_001359211, intron 2 of 26)	66090.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	4.04457541323334	4.12000748019449	3.67604146560607	4.15375698658702	3.91118041201895	3.91609639661393	0.083909626359555	0.875216351105555	0.970943409587731
Merged-chr11-49084163-2	chr11	49083663	49084663	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-2854.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	5.01751000756813	4.94315828144807	5.01504207453902	5.02124955849425	5.00549808493362	4.89807562634526	-0.0224503006973074	0.951635920060257	0.988894154538657
Merged-chr4-130812693-2	chr4	130812193	130813193	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	20156.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.79468967739883	4.45668908147561	4.72564424633343	5.06171971132839	4.38781029094715	5.0395621820682	0.442094935583289	0.339272095184309	0.729122178214163
Merged-chr17-46523261-4	chr17	46522749	46523749	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 17 of 40)	intron (NM_001081335, intron 17 of 40)	23139.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	5.70944355719244	5.65619812402087	5.87098201987258	5.78597284350188	5.81163259498207	5.97723050592568	0.206155175240229	0.503258205044643	0.836916333073941
Merged-chr11-44470574-4	chr11	44470058	44471058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-10.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	8.02489389601351	8.15298642250615	7.63885614211029	8.31062210695131	8.50853562819321	7.92125494252835	0.43996911968483	0.10045037144189	0.422702442887913
Merged-chr2-6256436-4	chr2	6255930	6256930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43436.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	7.21008353582391	7.20887046313659	6.94664100823519	6.75575812671861	6.91597143509747	6.78081599401045	-0.474905547721933	0.0583246726357217	0.312075066598491
Merged-chr11-5369328-3	chr11	5368835	5369835	+	939.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	12405.0	NM_001290501	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	2.84428371635833	2.52147476021218	2.80938196433613	2.52311158603888	2.51022541746088	2.70138922848396	-0.86292520717984	0.273450650212201	1
Merged-chr13-45110188-1	chr13	45109688	45110688	+	630.0	f1_c57bl6.idr	Intergenic	Intergenic	-108092.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.69856767970807	3.753715895754	3.80736942666234	3.65291267133178	3.68800708666804	4.0615861088155	0.17041631260319	0.754374405002413	0.938869310490163
Merged-chr14-70076853-4	chr14	70076370	70077370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289925)	promoter-TSS (NM_001289925)	-575.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.51110384124882	4.02886853053055	3.87388384639257	4.59508779159168	4.2386776708607	4.26095898554649	0.526441445498056	0.32091659814634	0.714648154651698
Merged-chr7-15922480-4	chr7	15921972	15922972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009156)	promoter-TSS (NM_009156)	-101.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	7.89093365834095	7.88175677100171	7.62325943026878	7.91792194770179	7.9500722440085	7.75372960802245	0.100390380798147	0.656372430858512	0.904644460166826
Merged-chr11-95258683-4	chr11	95258198	95259198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2831.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	5.20798180436222	5.32841480980758	5.45281345623757	5.1200189711166	4.92648530318311	4.72565209503443	-0.804940918227442	0.0339333952611775	0.225387537652116
Merged-chr14-55689739-4	chr14	55689262	55690262	+	845.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-7945.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	4.55925618506063	4.19666884848502	4.25608783128717	4.16955899438782	4.11550480817262	4.36823117886339	-0.368892015070972	0.436377499223375	0.799472869647494
Merged-chr15-5539569-4	chr15	5539117	5540117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	43299.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	5.68752568757796	5.60287890008593	5.31460450019866	5.33568072367689	5.09303096321612	5.0255933819926	-0.773770059012079	0.0314207558909335	0.214750084795507
Merged-chr12-55415910-3	chr12	55415405	55416405	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17080.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	6.60992835320564	6.74745653116659	6.84524780697636	6.74494500123938	6.83818544479684	6.86047798022282	0.128532464680413	0.611278678855769	0.886007771523372
Merged-chr18-20888185-3	chr18	20887692	20888692	+	803.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTEa-int|LTR|ERVL-MaLR	7886.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	4.93644897565781	4.92917212767706	5.13215984063724	4.94397220547613	4.94923525022525	5.19550008618872	0.066842528625933	0.859202915121244	0.967239713199238
Merged-chr4-86676233-3	chr4	86675789	86676789	+	750.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6230.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	2.86500784253367	2.68498408731253	2.88094391370637	3.16006306945693	2.95640989009735	3.1895148326956	1.41198781991759	0.047286921295052	0.275433047684817
Merged-chr17-29002929-1	chr17	29002429	29003429	+	724.0	f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	PB1D10|SINE|Alu	5066.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	4.72560574528837	4.38941100990289	5.1408418879326	4.9531975400087	4.93282015460025	4.75669784229135	0.248246843977469	0.577088728009018	0.871952040678671
Merged-chr8-57530826-4	chr8	57530345	57531345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 11 of 11)	Lx7|LINE|L1	19002.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	6.73060526009454	7.05991797348427	6.64526555779519	6.3744273833859	6.45627303770004	6.37845024834687	-0.677867402590152	0.0138887750063392	0.126122142390863
Merged-chr1-64297023-4	chr1	64296521	64297521	+	947.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-175632.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.25151972977602	6.34532477510634	6.5680782920351	6.02951434743638	6.59177279512907	6.47507143938839	0.00626451894516742	0.983773537122685	0.99644342633169
Merged-chr5-30914942-2	chr5	30914442	30915442	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 1 of 7)	intron (NM_133918, intron 1 of 7)	1156.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	3.78573415703756	3.57399610990448	4.34463460204001	3.93315814647861	3.60814161328708	4.25403896487174	0.0479000446537593	0.937589373689713	0.986057836872162
Merged-chr7-44823594-2	chr7	44823105	44824105	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-6947.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	3.36921859150948	3.47179373926336	4.00845388719716	3.57144522914395	3.49910121857566	4.07513243632238	0.308224365697273	0.629042101444019	0.893990147860797
Merged-chr2-150608095-3	chr2	150607598	150608598	+	639.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356491, intron 1 of 9)	intron (NM_001356491, intron 1 of 9)	469.0	NM_001356491	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	4.99070875705818	4.94870596446672	4.85482326388419	5.15033366636349	5.09250204116185	5.10247604323154	0.378427321892876	0.301733665250179	0.698435330295626
Merged-chr14-60515403-2	chr14	60514903	60515903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1|DNA|hAT-Charlie	-119302.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	2.5571400936602	2.38237344550847	2.4843348677695	2.68381742563112	2.52601595600592	2.74789980669108	1.02534792056709	0.196211777154818	1
Merged-chr7-127573777-2	chr7	127573277	127574277	+	806.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360741, intron 1 of 8)	intron (NM_001360741, intron 1 of 8)	429.0	NM_026888	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	5.32098223007342	4.90520418490477	4.91541013190947	5.15656719125957	4.94036816304566	4.73961735145667	-0.226722042194403	0.577549900478193	0.872148719828391
Merged-chr15-80097692-4	chr15	80097189	80098189	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	6355.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	3.23368013148719	3.2345902247731	3.31780858219887	3.24740078940396	3.28130579221119	3.3332121127624	0.107762534208052	0.859470468054015	0.967340407715919
Merged-chr11-69414192-3	chr11	69413713	69414713	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-538.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.64857556622605	5.32546773808727	5.15245279760252	5.4107465414244	5.66739365605146	5.28804814428508	0.142065107687645	0.70039549160451	0.920919335036368
Merged-chr1-152687335-2	chr1	152686835	152687835	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62118.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.5231517563993	3.98308675936804	4.34475775849895	4.37227252107534	3.98021755705703	4.08853525938069	-0.397594742942836	0.437692107892283	0.800146869529421
Merged-chr5-92489234-3	chr5	92488763	92489763	+	945.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	16394.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.67172237795669	6.58401464490022	6.84865155045043	6.75215412214808	6.626648826754	6.34990065473879	-0.1652568238165	0.54810540032218	0.859503669232264
Merged-chr1-171247665-3	chr1	171247185	171248185	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-563.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	7.18321925921497	7.11221665246913	7.32474974249745	6.89960969737194	7.27700586111143	7.15236191084666	-0.123033454278925	0.626165086392867	0.892819497179456
Merged-chr2-49472874-3	chr2	49472369	49473369	+	909.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	21383.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.76879885589513	3.9098861303108	3.84608086062091	3.6851542120078	3.77840676641248	3.59854893638304	-0.48461220842111	0.365989897355562	0.751061419566468
Merged-chr11-85670941-2	chr11	85670441	85671441	+	858.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48803.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.73655471794194	6.09658393565984	5.71674371978103	5.25575067008886	5.57793131678222	5.11638186588884	-0.967478353912716	0.00789636951887479	0.0852967824128954
Merged-chr5-3495499-2	chr5	3494999	3495999	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	B3A|SINE|B2	-48334.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.01001842874218	4.90608548294732	4.73660667663388	4.36415141782838	4.49259948603806	4.32967987032976	-1.20048414773585	0.00483688082679567	0.0598197354096335
Merged-chr7-44300136-1	chr7	44299636	44300636	+	594.0	f0_c57.idr	Intergenic	Intergenic	6823.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	2.65462862557036	2.79823188591838	2.97735051988414	3.09461939570576	3.02278400578913	2.99077151229665	1.1119868811251	0.120103706647861	0.46341707501763
Merged-chr6-34689220-2	chr6	34688720	34689720	+	878.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-20224.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	2.45055156793361	2.51795740775605	2.34268767899995	2.64069643551357	2.62846127828333	2.80426091220812	1.45414506264132	0.0765635772786742	1
Merged-chr12-111746292-3	chr12	111745775	111746775	+	687.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-12574.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	4.21594986189747	4.31140157968164	4.495182916233	4.33614145871279	4.44238481098578	4.8522494856427	0.540328696169006	0.243244398893623	0.640482261420225
Merged-chr18-67252498-1	chr18	67251998	67252998	+	857.0	f0_balb.idr	Intergenic	Lx8|LINE|L1	-6668.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	3.3562846593123	3.61488319007906	3.65640474000466	3.37484235957858	3.26123477642538	3.4107900756727	-0.759246141622221	0.205855580008482	0.596470073522506
Merged-chr13-100201030-2	chr13	100200530	100201530	+	782.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	Lx9|LINE|L1	1092.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	6.18929656689639	6.18742501153853	6.12303664598073	6.87468217272728	6.62180539130936	6.13838880430971	0.687708743190591	0.0271589600938096	0.196308064865786
Merged-chr4-148655164-4	chr4	148654678	148655678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	11861.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.81539071450164	3.90305490556754	4.23216460987846	4.68833380943544	4.50019823861337	4.74350938139231	1.79483923649515	0.000197368479475462	0.00496152158314026
Merged-chr14-105501095-4	chr14	105500597	105501597	+	984.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	2309.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	3.08337170818462	2.87740346865762	3.2130032053041	3.09241205337829	2.94156468055529	3.22919426823633	0.121418462105798	0.858407356974706	0.96690833694794
Merged-chr9-72448184-2	chr9	72447684	72448684	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008613, intron 4 of 9)	intron (NM_008613, intron 4 of 9)	9655.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	2.6520416383785	2.39831409477927	2.77754136943912	2.69392608905842	2.72282609750699	2.85033293373408	0.765493577202705	0.331561061835248	0.722932048456248
Merged-chr2-160211875-4	chr2	160211394	160212394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115600.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	7.06835140201057	6.86915254424708	6.96978001547662	7.01269452905723	6.90414353340651	6.93067542646461	-0.0340837500245972	0.889059445885788	0.974207858658472
Merged-chr10-53926123-2	chr10	53925623	53926623	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	B3|SINE|B2	149673.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	5.84735252697727	5.56704383752471	5.30468920194389	5.05497886671294	5.04490095529326	5.13080233654982	-1.04826261206127	0.00397268536339233	0.0516740978141549
Merged-chr9-73001734-4	chr9	73001214	73002214	+	948.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114328, exon 5 of 8)	exon (NM_001114328, exon 5 of 8)	16210.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	5.68843521168603	6.00063656229217	5.87830227413543	5.43313933076495	5.55277851231323	5.4892310995202	-0.675984301508509	0.0363806641921876	0.234681937057411
Merged-chr7-73556978-3	chr7	73556533	73557533	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	intron (NR_037569, intron 1 of 4)	1362.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	7.68380979763614	8.1869903571014	7.65378521817637	8.04713879575391	8.41823561486646	7.94514482643557	0.405856642845323	0.135943252218935	0.492879465608365
Merged-chr2-165316285-2	chr2	165315785	165316785	+	714.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	66.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	5.05478057149949	4.75408447744636	5.13146632362864	4.4081187650359	4.35426284634014	5.07142236040403	-0.781749908572187	0.093485929936637	0.407217949776011
Merged-chr6-59214142-6	chr6	59213654	59214654	+	830.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5284.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	3.34593333169973	3.56398428886573	3.49617138014509	3.32181904747232	3.19803142032958	3.66765418552551	-0.263067925289908	0.672215472834415	0.910756996322765
Merged-chr2-93458861-4	chr2	93458362	93459362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2989.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.29817174790283	7.15850931063746	6.60047519071808	6.89941814349427	6.96226804807106	6.62377149564603	-0.337050313533192	0.258475450684275	0.656048113367818
Merged-chr3-116184102-3	chr3	116183587	116184587	+	913.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54399.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.60322520912843	5.2370446529465	5.55800227242431	4.97926632900588	5.02556014020462	4.95850550693224	-0.979160599087935	0.00759457141596725	0.0829085670926008
Merged-chr9-58267116-2	chr9	58266616	58267616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13952.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.41541644122916	6.22779392633547	6.19617052074644	6.53283478684034	6.42908754944743	6.72123714229529	0.440208602450125	0.11376157693604	0.450562772797087
Merged-chr19-32935769-3	chr19	32935300	32936300	+	825.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178223.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	2.33504913924398	2.15079581489106	2.39257227618717	2.57771930617549	2.22807958722553	2.59479531777754	1.14673980645814	0.193778240966794	1
Merged-chr9-64793079-4	chr9	64792571	64793571	+	790.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17940.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.57627112807851	4.72161035863571	4.24772245714224	4.10041416524689	4.23704350204549	4.11845776334709	-1.00510978035635	0.0340027101592601	0.225621810760105
Merged-chr2-155819950-2	chr2	155819450	155820450	+	969.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-747.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	5.80611293854348	6.02981194777158	6.52519415644407	6.41877526467636	6.66936088640699	6.64805615068755	0.724163323953431	0.0244488465404896	0.184286586007886
Merged-chr2-157567505-2	chr2	157567005	157568005	+	821.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1144.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	6.72638478820134	6.54438641755174	6.39938500300046	6.75112110917264	6.67625995657357	6.27394464522011	0.0379939543380166	0.895491110590207	0.975665889379756
Merged-chr7-4494309-4	chr7	4493793	4494793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	7387.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	5.53119603160662	5.35451978771676	5.56038741916638	5.48665658445195	5.53805741403715	5.72628426532858	0.192097701806625	0.560543885061756	0.865261302076164
Merged-chr1-153901462-4	chr1	153900882	153901882	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008131, intron 1 of 6)	intron (NM_008131, intron 1 of 6)	1453.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.09610719966899	5.69651110640118	5.75663622689176	5.88095476371823	5.87197975927211	5.94298072499317	0.0509032908934372	0.871926273513061	0.970261003150518
Merged-chr2-159784881-4	chr2	159784414	159785414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162427.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	5.50792069342044	5.2860942905097	5.92864239398928	5.51540906856573	5.34426781119228	5.98878699578636	0.0800650260809268	0.837413182879436	0.962133986386607
Merged-chr19-30010853-3	chr19	30010389	30011389	+	845.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	7099.0	NM_025741	66745.0	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	2.89302408195228	3.18835784568247	3.34095396206907	3.14851024907709	2.77265815844519	2.89327838631788	-0.917826813106961	0.209516210648017	0.601085495142021
Merged-chr17-71670211-2	chr17	71669711	71670711	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3050.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	3.52386267290957	3.50803129163514	3.53501733804484	3.55703239112188	3.33870603132466	3.4409109852305	-0.282365395405461	0.625314589899986	0.89246806537449
Merged-chr2-128828673-4	chr2	128828162	128829162	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355629, intron 5 of 18)	intron (NM_001355629, intron 5 of 18)	10359.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.77548729513272	5.86352034040162	5.59236734648104	5.68411419066481	5.60685302429535	5.37891231926363	-0.34141161953912	0.296715495984657	0.693338846636842
Merged-chr17-35214814-4	chr17	35214336	35215336	+	859.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9485.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	5.95499191079424	5.42488920921971	5.52999728723072	5.41119332107183	5.42569698855049	5.75291730944326	-0.248333652820502	0.49080949855402	0.830181469396006
Merged-chr1-60565559-2	chr1	60565059	60566059	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045513, intron 1 of 13)	intron (NM_001045513, intron 1 of 13)	1206.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	3.92248673874344	4.00332796528551	3.93283196920218	3.7211671808245	3.62989752650076	3.69452274495917	-0.894209661350962	0.0873308757945816	0.391858688153341
Merged-chr11-93987184-3	chr11	93986643	93987643	+	854.650024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8948.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	5.74903090472096	5.82970307608642	5.7130070048228	6.09995090081423	6.50588876083258	5.83064995830803	0.736444786820542	0.0265098382951988	0.193519655172895
Merged-chr7-101051457-4	chr7	101050941	101051941	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39388.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	5.42799993441675	4.97990809205708	4.9499136740916	4.48684156099162	4.40220204395954	4.62368166971368	-1.47956466582398	0.000455099705615488	0.00975977739815811
Merged-chr2-163766407-4	chr2	163765862	163766862	+	852.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16123.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.63739917963708	4.30955583285198	4.37110960831922	3.71769112042137	3.36964012852869	3.63922460633586	-2.88268833969602	7.68997389947415e-07	4.31177458374289e-05
Merged-chr4-6444029-4	chr4	6443510	6444510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10261.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	4.58972362746592	4.37189160657958	4.57446602799371	4.39977039303695	4.38215641849258	4.34376261755575	-0.344979826563549	0.428580470066577	0.795408033039652
Merged-chr12-40382172-2	chr12	40381672	40382672	+	822.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	MTC|LTR|ERVL-MaLR	63618.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	4.87563860061719	5.03000694418236	4.69365236565846	5.23680354673098	4.77778444696781	5.16642655510086	0.400425330445885	0.327251954500304	0.719396012109034
Merged-chr12-17796073-2	chr12	17795578	17796578	+	589.5	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	105269.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.82782676580869	1.92186725692175	1.8102655506479	2.08914696642131	1.91979083552644	2.22890543184433	1.87676878243765	0.0672219372571853	1
Merged-chr11-107321713-4	chr11	107321229	107322229	+	753.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	polypurine|Low_complexity|Low_complexity	-132348.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	6.45315810754932	5.85933703173599	6.35820101691824	6.2985172360766	6.37364275963836	6.36157657934524	0.16436761992079	0.597390411415262	0.880373726631028
Merged-chr5-110771787-2	chr5	110771287	110772287	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152254, intron 1 of 1)	ID_B1|SINE|B4	838.0	NR_152254	100504049.0	Mm.474515	NR_152254	ENSMUSG00000086401	Gm15559	-	predicted gene 15559	ncRNA	4.88103651882073	4.9853824158983	4.9135108334588	4.48921286725744	4.41365599155571	4.83554624963904	-0.817650519007638	0.0486107524436151	0.279830091064933
Merged-chr7-108930192-4	chr7	108929671	108930671	+	847.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175532)	promoter-TSS (NM_175532)	-13.0	NM_175532	244202.0	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	3.16017223744922	3.1112276536276	2.99780822550767	3.3891230071608	3.62903831917735	3.26299747221997	1.42761395122768	0.0301607650955009	0.209623867529773
Merged-chr17-84203340-3	chr17	84202874	84203874	+	783.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-15427.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.14274883828495	4.03786538282587	3.78491886299478	3.6004267565026	3.75478596516327	3.57484313451896	-1.12877067251859	0.0411327399069949	0.253130169527493
Merged-chr6-47320105-1	chr6	47319605	47320605	+	593.0	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	75709.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.80768964058833	4.00486306968	3.68310449713691	3.86744109474118	3.81640737832052	3.75467415971277	-0.0991093271953946	0.85208488268465	0.96531854415899
Merged-chr6-34862064-2	chr6	34861564	34862564	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.885872936742	7.27830894746067	6.79488385566925	6.88279176814029	7.08154879058098	6.79046331847787	-0.124886388659364	0.652579799779165	0.902986290245403
Merged-chr9-104661628-1	chr9	104661128	104662128	+	907.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	92145.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.50373230745757	3.6220635377383	3.50578006830178	2.99046311086219	2.9985161129736	3.24369170109279	-2.04771651939932	0.00208351986094247	0.0318921119553534
Merged-chr15-59722609-3	chr15	59722078	59723078	+	875.4285890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72381.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.35220591864549	5.39294757959577	5.45825269327836	4.95612247365774	5.05267267659692	5.49291647620196	-0.451170446401785	0.223895314042858	0.618583567117513
Merged-chr17-56884506-4	chr17	56883996	56884996	+	864.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 10 of 13)	PB1D7|SINE|Alu	8863.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	4.80494708879565	4.54640632351278	4.59143946559862	5.1821289320469	5.08086304564325	4.57033243728671	0.73094767858759	0.0902682521695601	0.399521481850518
Merged-chr17-56270628-2	chr17	56270128	56271128	+	806.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	6139.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	3.90977070198976	3.46504906485188	3.77258042733539	3.76952756140169	3.57039793086413	3.89103879978376	0.0499816134062553	0.930353864774247	0.984492513131011
Merged-chr18-35740047-4	chr18	35739476	35740476	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289592, exon 2 of 8)	5' UTR (NM_001289592, exon 2 of 8)	578.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.59402614041983	5.75125537959739	5.56276263939388	5.62291509143074	5.47978730506024	5.53942470163124	-0.182221142910823	0.570948255776492	0.869288072801053
Merged-chr4-118428712-4	chr4	118428197	118429197	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039175, intron 1 of 6)	intron (NM_001039175, intron 1 of 6)	604.0	NM_019422	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	7.14443397740754	7.43897737635079	7.57045762238472	7.51266165974546	7.51689859535321	7.51236513699084	0.180414296874199	0.456128276638913	0.811360279461309
Merged-chr1-64113838-2	chr1	64113338	64114338	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	7551.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.11013350423039	2.97184482867372	3.14771561538024	2.94406994066295	2.80323922849593	2.98809020180283	-0.793265907570112	0.247252138966474	0.644145276280485
Merged-chr4-59454239-1	chr4	59453739	59454739	+	909.0	f0_balb.idr	Intergenic	Intergenic	-15606.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.93179668212894	4.22368455717381	4.29136787631143	3.73129569870578	3.72570146914079	4.19006258212242	-0.786337200180352	0.143694058414193	0.506028730682277
Merged-chr17-57105321-4	chr17	57104837	57105837	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-48.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	2.71197353396187	2.55970132580576	2.74260187839278	3.37235702639559	3.21834821116918	3.13882352059712	3.20279856433139	0.000113064880332367	0.00314120285899687
Merged-chr13-21173213-2	chr13	21172713	21173713	+	867.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6718.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	3.30340041113706	3.38424179371389	3.21436649505629	2.97425640895236	3.0738901747256	3.34184589104231	-0.728921021059551	0.266567508902957	0.664166899200562
Merged-chr13-24807992-2	chr13	24807492	24808492	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	6335.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	4.19481653081771	4.09309814207396	4.64977987424018	4.92159364111174	4.48822732004098	4.63864624907832	0.923391580386395	0.0527555500170418	0.293938918295032
Merged-chr2-167690674-4	chr2	167690166	167691166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-93.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.13678771888862	8.59906822116485	8.17310196370596	8.27424811708246	8.58584639373255	8.30022422318479	0.10172318573974	0.679273084443142	0.913693374830142
Merged-chr12-34723272-4	chr12	34722764	34723764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	193831.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.37198171982962	6.44243916692896	6.13806508051501	6.24887620377359	6.22576305249817	6.28284627065931	-0.138106924830567	0.621453771208128	0.890731481839396
Merged-chr4-34049974-2	chr4	34049474	34050474	+	706.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290443)	promoter-TSS (NM_001290443)	91.0	NM_001290443	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	2.03947734374411	2.04506510352476	2.30321219374695	2.08145530883949	2.03805085960358	1.91047697581321	-0.895324050916238	0.352450679209471	1
Merged-chr11-17000577-4	chr11	17000057	17001057	+	926.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	8161.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.84679462425338	7.35232508511919	6.97814235481336	6.94036141800895	7.11959393881063	7.31635814572982	0.0715878876048415	0.796317654713197	0.951410019719943
Merged-chr7-84192310-2	chr7	84191810	84192810	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-40417.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	2.14386710023238	2.19884520562739	2.21813606299182	2.57935881427865	2.39794313791155	2.49498527527326	2.16794536983284	0.0160162993000464	1
Merged-chr2-23006426-4	chr2	23005917	23006917	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	Lx8|LINE|L1	33824.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	6.41412035730427	6.23465739836124	6.14146307916172	6.65204250803277	6.56516252366687	6.37062722368301	0.432010835440863	0.121931223115954	0.46711110557239
Merged-chr15-54929626-4	chr15	54929090	54930090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	5.1321315597591	4.64708098118852	5.19232137509062	4.81140584418269	5.39436566105574	5.53818666427643	0.563160679566202	0.196239566421518	0.584043988940614
Merged-chr17-29070799-4	chr17	29070312	29071312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	8314.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	4.40698363380143	4.39124636449602	4.39425066942717	4.58543583367575	4.37618149418578	3.96379125430421	-0.141571356188875	0.770779806155541	0.94345245755247
Merged-chr10-117862924-2	chr10	117862424	117863424	+	777.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-16950.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	2.58711553761589	2.51351527497879	2.93144532449157	2.42672729804937	2.55487154214168	2.59301277271565	-0.892092285803078	0.27005656003474	1
Merged-chr11-5522146-4	chr11	5521607	5522607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 2 of 4)	intron (NM_013842, intron 2 of 4)	1466.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	7.9574554364826	7.83681674382061	7.49708796642018	7.46277478107962	7.66736598742356	7.56414308631235	-0.312690829526439	0.199706797965782	0.588282056329409
Merged-chr4-3875156-4	chr4	3874614	3875614	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3009.0	NM_020021	17451.0	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	3.24469521351989	3.60035885962809	3.38425197726682	3.37657540780741	3.10234014425169	3.03215160103215	-0.966768368311203	0.146850839183289	0.511240993378934
Merged-chr6-129404470-2	chr6	129403970	129404970	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 5 of 5)	L1_Mus4|LINE|L1	-4392.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	4.84665555254906	4.64867992322483	5.31654743201374	5.27275789704204	5.16664045768171	5.80220358801495	0.975377274289677	0.0235128225016449	0.179772098845061
Merged-chr13-67778665-3	chr13	67778171	67779171	+	966.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1022.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	4.23466977407807	4.32981028876939	4.64234084390443	6.81620879021359	7.13222548364511	6.2478278538061	5.05015342592403	1.60495687767143e-27	5.13635584143401e-24
Merged-chr4-128840568-4	chr4	128840036	128841036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34424.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	6.78869311155342	6.81670927227613	6.804976771921	6.64721914068173	6.49530175305452	6.46498010337974	-0.416823238925251	0.101830293185764	0.425738109693493
Merged-chr9-89204451-4	chr9	89203952	89204952	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	5179.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	3.02730714280297	2.69593107832976	2.88627441045035	3.08440260969428	3.05008488270035	3.02138019522926	0.825894160279503	0.244358261230254	0.641648643033546
Merged-chr3-116425507-2	chr3	116425007	116426007	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1475.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	3.10323263317326	2.96533448441691	2.96870949435018	3.23684507452325	2.98667039337569	3.10312679891668	0.425091302882029	0.524868057472116	0.848833934932934
Merged-chr6-31224659-3	chr6	31224155	31225155	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	L2c|LINE|L2	4304.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	3.33620044404623	3.12332880446698	3.1405066870853	2.95361370180099	3.03306932554664	3.15434296254984	-0.703140866341196	0.287113976843628	0.684355890607138
Merged-chr2-30171632-4	chr2	30171192	30172192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007931, exon 1 of 3)	exon (NM_007931, exon 1 of 3)	168.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	7.10089222180815	6.87750754795218	6.97714577342539	6.91981697610831	6.58775410507989	6.98159515119804	-0.241624830626137	0.362583784518898	0.7480937177279
Merged-chr2-25588773-4	chr2	25588263	25589263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-8664.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	6.81189412692823	7.25108300392241	7.00541263128494	6.71538561432844	6.92245068997092	6.77555582443715	-0.348477541782374	0.193335647075463	0.58042547704774
Merged-chr7-116458392-2	chr7	116457892	116458892	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-14934.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.9837594682516	7.06509488015456	6.59936474821877	6.7257306128449	6.91086658476144	6.6931968220588	-0.190415869797938	0.485568447842543	0.827504186777075
Merged-chr11-69046554-2	chr11	69046054	69047054	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011496, intron 1 of 7)	intron (NM_011496, intron 1 of 7)	917.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	4.5261908914107	4.79589384897092	4.89869918375791	4.63023813148614	4.76899504604938	5.09404852134397	0.211818414129534	0.61667280567413	0.888421011873208
Merged-chr14-75191398-6	chr14	75190972	75191972	+	781.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-50815.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	5.37774196349395	5.19946417255748	5.53969525664409	5.16043818581844	5.34687599419469	5.40615259482668	-0.125960689942011	0.721005616895671	0.928345098946286
Merged-chr9-63043708-3	chr9	63043131	63044131	+	718.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62752.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.84179163562907	3.79664868250693	3.80300340667142	3.86049624440801	4.15087187941652	4.02293188961392	0.636665904823475	0.212640519340076	0.605171266998975
Merged-chr19-38021457-1	chr19	38020957	38021957	+	1000.0	f0_balb.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	22120.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.9120645475284	5.06923229381521	5.16261247008042	5.19476285378356	4.97581818073476	5.09424253135597	0.0875775497975388	0.813274567055389	0.955940138311315
Merged-chr13-37557914-4	chr13	37557425	37558425	+	892.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212580.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.29832753301489	2.19463887623125	2.55654903988621	2.32025486365979	2.19052805387566	2.18176670346503	-0.815688621000046	0.356532475495829	1
Merged-chr7-90135311-2	chr7	90134811	90135811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	5098.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.79124909958482	7.37652283652619	6.54369556495281	6.53588057102044	6.89078661935856	6.54797050965004	-0.446716086204291	0.171582325835084	0.549748890798409
Merged-chr7-121130890-2	chr7	121130390	121131390	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 16 of 28)	(CAAA)n|Simple_repeat|Simple_repeat	47452.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	2.73952313226494	2.62715001158817	3.10063606875506	2.78558407742521	2.51580826388798	3.0080548655953	-0.256325455520225	0.748073033073273	0.936880860325556
Merged-chr7-101882472-4	chr7	101881990	101882990	+	969.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1165.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	5.5971690453686	5.30149269947744	5.27289536020821	5.68437931489763	5.41513926245445	5.40194179186116	0.197041325901717	0.573428866072774	0.870156136738611
Merged-chr10-96263839-3	chr10	96263335	96264335	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37628.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.6002275428962	3.26518238507052	3.46217226451212	3.55606646863138	3.27480921487411	3.18387892295447	-0.385384669140025	0.544384559664155	0.85765692399006
Merged-chr9-41154199-4	chr9	41153694	41154694	+	934.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	3868.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.9411234962788	4.60017157906946	5.05845446464502	5.23044161628369	5.39701862031891	5.12325442871079	0.828064207589994	0.0335492006938817	0.223718696212255
Merged-chr10-58393232-4	chr10	58392736	58393736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-1137.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	6.90448863475135	7.10862486704908	6.93139987617897	7.04593657796647	7.27420009895	7.20954632271174	0.29320509784999	0.232994646097166	0.62936691703847
Merged-chr10-34137661-2	chr10	34137161	34138161	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9689.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.84358104523939	4.71221587959011	4.51598951592909	4.63692599300035	4.4722923361816	4.45000914558698	-0.4391915075391	0.30067046870442	0.697371104110311
Merged-chr2-84655982-4	chr2	84655487	84656487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	B1_Mur2|SINE|Alu	2990.0	NM_001355064	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.96836108007617	4.99120666225284	4.65069332882609	4.90004756900499	4.94612363619608	4.88020936224786	0.0449349291253005	0.908819447996632	0.979318923423343
Merged-chr2-164009233-3	chr2	164008720	164009720	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	14023.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	5.3546615728287	5.45437211155474	5.05278682586437	5.51794820303558	5.03109684261385	5.00521103597949	-0.194825407049742	0.619748674783166	0.889902114505378
Merged-chr9-118506907-6	chr9	118506393	118507393	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018748, intron 1 of 23)	CpG	575.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	6.00917027308493	6.13326396604244	5.69800150746346	6.11114890815589	5.73705713128023	5.84161856745612	-0.11550197042538	0.72222825287938	0.92872455507539
Merged-chr1-58720223-4	chr1	58719713	58720713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6927.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.41846465038942	6.3928599423025	6.67432510784947	6.31385972570976	6.50385537220505	6.39306498248818	-0.133992058619779	0.626485653652998	0.892916235446326
Merged-chr4-53109458-1	chr4	53108958	53109958	+	772.0	f0_balb.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	50437.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.56031034846274	5.64009377067393	5.62038749159089	5.78648059068094	5.5929735105436	5.38523212674215	-0.00195171175391552	0.995271089822673	0.998961028701257
Merged-chr4-43455409-2	chr4	43454909	43455909	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-783.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	4.12324022908079	3.860711551333	3.8527828886054	3.52738073038544	3.74929580965452	3.9222026074033	-0.688165308538546	0.20867143330973	0.59965921681354
Merged-chr9-21072807-2	chr9	21072307	21073307	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039824, intron 3 of 4)	B1F|SINE|Alu	707.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	5.16728613125619	5.36527164501938	5.11668568425592	4.99759777506996	5.17053392492901	5.14712297425784	-0.244647374762538	0.499380573314827	0.834470503953813
Merged-chr2-52577833-4	chr2	52577314	52578314	+	841.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-19203.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	5.09221004871754	5.11346007655526	5.09960750064044	5.18631305809419	5.03093295184693	5.26080944441501	0.109107251194354	0.761484645166071	0.941258867861232
Merged-chr14-19948405-2	chr14	19947905	19948905	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285909, intron 3 of 5)	intron (NM_001285909, intron 3 of 5)	28288.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	3.04479750884082	3.1430920778348	3.08378738822204	2.79239501655229	2.79498366195847	3.04002037024052	-1.0507528900278	0.132521823359144	0.487117368823946
Merged-chr1-156986432-4	chr1	156985917	156986917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46791.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	4.59976205162457	4.05309723545338	4.21899582698632	4.80738701299959	4.4999630184091	4.9350468730614	1.06607943092762	0.0276228132725628	0.198295146819378
Merged-chr11-118168450-2	chr11	118167908	118168908	+	864.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-39189.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	2.77038097807652	2.62709472922878	2.85760918425562	2.66493278455649	2.38165723533	2.93014164399057	-0.408617767222967	0.619268505936907	0.889749463061948
Merged-chr11-3452375-4	chr11	3451866	3452866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028317)	promoter-TSS (NR_028317)	-71.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	7.54842496371735	7.95141605246925	7.89903100761626	7.78142386370961	7.89917206255891	7.72408931088247	-0.00528240558800874	0.982283923161565	0.995992226862322
Merged-chr6-42352864-2	chr6	42352364	42353364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3036.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.73201658076626	6.27379700534768	6.27719226789326	6.29246697310827	6.59326941531867	6.59615113898285	0.0779135408516273	0.795979015177982	0.951396269938008
Merged-chr10-12923193-4	chr10	12922693	12923693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038027)	promoter-TSS (NR_038027)	-66.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	5.88418771728724	5.99343279655816	5.93109883830494	5.73688626539934	6.04879390001327	5.68409433722057	-0.15848543772828	0.61352928787573	0.887280050499927
Merged-chr4-102646359-6	chr4	102645839	102646839	+	803.986084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56496.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.1467690164179	4.98065915747651	4.88735888824023	5.25736085859053	5.17572540024375	5.44649364325281	0.563789968209796	0.125963154020108	0.474743679619431
Merged-chr3-107680114-2	chr3	107679614	107680614	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	15942.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	4.42093844761556	4.65264110139897	4.48214564833609	4.60561780701815	4.56198902834463	4.59131857783818	0.144692456007027	0.731404368545672	0.93137425473257
Merged-chr1-53783160-3	chr1	53782666	53783666	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	PB1D9|SINE|Alu	2049.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	7.12716329510611	7.30644099169622	6.50211543928004	6.9557206485223	7.33015143602005	7.14239153823428	0.180332394809877	0.55908946935789	0.864901733108576
Merged-chr7-19496388-4	chr7	19495904	19496904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11927.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	5.38519181496675	5.10251449532633	5.54005778992204	5.49787049911024	5.46031108867453	5.6546837043396	0.36755747333721	0.293222156686711	0.690196017357506
Merged-chr17-64666100-3	chr17	64665601	64666601	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	intron (NM_008549, intron 6 of 21)	64452.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.0089837007648	4.17792977067367	3.93148532883534	3.81004823780452	3.66515346931222	4.09560844116153	-0.582259074070912	0.270303719476062	0.667262939156975
Merged-chr15-31465959-1	chr15	31465459	31466459	+	742.0	f0_balb.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12270.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	4.20387918032023	4.43259347175096	4.42474506724991	4.06461521303329	4.4390875542058	4.44978372702901	-0.065550135018244	0.889058636746392	0.974207858658472
Merged-chr14-103070212-4	chr14	103069736	103070736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033242)	promoter-TSS (NM_001033242)	20.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	8.31719080630198	8.32208570935899	7.97825012742095	8.341094766069	8.53238883392495	8.15236053859995	0.189612897535863	0.419994857819316	0.789422217114226
Merged-chr6-87504044-6	chr6	87503499	87504499	+	801.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	(TC)n|Simple_repeat|Simple_repeat	-7672.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.38227592495615	6.21767334484984	6.49296344907867	6.32953603025592	6.13061602224023	6.81104289586509	0.129873050742543	0.681945937099567	0.914908045004202
Merged-chr10-98977059-2	chr10	98976559	98977559	+	769.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	61907.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.94992587659989	3.69885672129478	3.79669036689617	3.7208693842785	3.59596827957329	3.81570894642878	-0.376595165953299	0.484954521276188	0.827243194947601
Merged-chr7-141017522-2	chr7	141017022	141018022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-630.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	6.41373391445335	6.13315491831465	6.62549917869733	6.55528384561139	6.41651035551939	6.73009920490121	0.274670818679335	0.348759332638805	0.736686803163324
Merged-chr1-97319788-4	chr1	97319303	97320303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191500.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	5.12966104610747	5.61685038191721	4.82628151028223	5.11358655731516	5.1483593096063	4.85269234735211	-0.400447758835111	0.34617878763919	0.734515828466387
Merged-chr2-103567120-4	chr2	103566619	103567619	+	869.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178890, exon 1 of 17)	exon (NM_178890, exon 1 of 17)	809.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	3.50629466540036	3.18965432421075	3.08824842806322	3.44707669365704	3.15186784123047	3.34389593675644	0.150995149301867	0.818683593245879	0.957038233563314
Merged-chr4-109333326-3	chr4	109332822	109333822	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-9734.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.25667661566655	3.72251167489986	3.77386354581604	3.48287559041658	3.4571901599667	3.88872254843993	0.0562933080762017	0.928374872069598	0.983802612059568
Merged-chr17-47761150-2	chr17	47760650	47761650	+	937.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	23219.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	4.44228575028004	4.37177283347703	4.18326402739968	4.55210849035343	4.47789047432139	4.2534555746963	0.246849728437929	0.586623354025222	0.875615538765309
Merged-chr12-85437744-4	chr12	85437249	85438249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36141.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.66985730311327	5.6520907349498	5.23219070910282	5.26593240214746	5.10564468838937	5.29699784963884	-0.640942398933846	0.0725885660291352	0.354000082179831
Merged-chr14-54606035-4	chr14	54605537	54606537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028890)	promoter-TSS (NM_028890)	-129.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	5.65616263394951	5.50084939696397	5.64803753653841	6.22762946038644	6.08191559101918	6.16329058351574	0.985764064020409	0.00103285965277655	0.0184690936748765
Merged-chr13-56703672-4	chr13	56703178	56704178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	10.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	7.44599741856499	7.12312017711404	6.93334871351375	7.4549358903918	6.77937910676965	7.00598243771265	-0.118052830409099	0.697080774494116	0.919839094614619
Merged-chr6-97412689-2	chr6	97412153	97413153	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	L1MC|LINE|L1	46633.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.90529579929569	4.06627147884142	4.22151045246312	4.1499368011217	3.94943192003663	4.2883621767309	0.182809941922769	0.713058284111519	0.925358771395728
Merged-chr1-156674373-4	chr1	156673883	156674883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-44.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	8.59042095842495	8.78909547605966	8.5201991196805	8.37785996975015	8.57673172953175	8.08590972749415	-0.375470777441824	0.110541129335078	0.444247148071402
Merged-chr8-35591929-3	chr8	35591388	35592388	+	921.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-2868.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.20077345392498	3.14605729529632	3.13549462019551	3.3375934182356	3.05654107890288	3.26616961035212	0.249227532681255	0.697191558930644	0.919859963548202
Merged-chr3-95994010-4	chr3	95993509	95994509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1830.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	8.00279283033411	8.26997743418887	7.58342549402732	8.05042392010763	8.29992407809898	7.70929501892162	0.0835402224983353	0.769265998187987	0.943096029055944
Merged-chr16-49888370-4	chr16	49887881	49888881	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 4 of 9)	Tigger6a|DNA|TcMar-Tigger	32727.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.33150346880563	5.53191355442467	5.13623056886395	4.95835903400583	4.83329989779342	5.02474530166745	-0.874175691514917	0.0187224812843156	0.154816506719567
Merged-chr3-126695538-4	chr3	126695039	126696039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	98588.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.97570743615398	6.24088124872811	5.83611767414559	6.48060525100924	6.38004035264774	6.02607437625502	0.469581297068084	0.134238093152631	0.489960947525619
Merged-chr10-57715443-2	chr10	57714943	57715943	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	64462.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	3.24409478077603	3.32232259971506	3.66463681259798	3.68811835973308	3.6695277417245	3.52479884877385	0.798861527713204	0.1823734204507	0.565174211130795
Merged-chr10-121471756-4	chr10	121471276	121472276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	4474.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.29458323614581	7.04634459496951	6.88375050135691	6.63811498457831	6.82433111812383	6.56721121809212	-0.621766072747083	0.0204577580515749	0.163882654467647
Merged-chr15-72838434-4	chr15	72837924	72838924	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	MTEa|LTR|ERVL-MaLR	-28100.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	5.51050668727962	5.43580343439568	5.60248048855794	6.21122073247461	6.26760233112039	5.69469443663266	1.04330503740585	0.0016646034926907	0.0268115229229206
Merged-chr5-35718281-2	chr5	35717793	35718793	+	556.0	f0_balb.idr|f1_balb.idr	exon (NM_194344, exon 5 of 18)	exon (NM_194344, exon 5 of 18)	10983.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	2.04246567828284	2.11496729871237	2.25295711935996	1.92294665404105	1.91272657806579	2.2002156429548	-0.957975478746976	0.318387523003536	1
Merged-chr2-164681686-4	chr2	164681184	164682184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-3423.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	6.03470519858291	5.90797833546033	6.05683101097561	5.96872133772199	6.09325963639606	5.98165124207336	0.0390604887392087	0.893227073788184	0.975210713351106
Merged-chr1-181246680-5	chr1	181246219	181247219	+	791.41333	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-34741.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.19050778313936	6.40998569439181	6.70901963715556	6.39647148914404	6.69463475499602	6.8111084028054	0.318857606200116	0.285256314341515	0.682814628441307
Merged-chr11-79256310-2	chr11	79255810	79256810	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	2.93071180872218	3.19255410150585	3.06647430824359	3.17628992984921	3.35577845886451	3.36844765408291	0.987726270062374	0.133093643438151	0.488098015919682
Merged-chr1-164061450-4	chr1	164060937	164061937	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011346)	promoter-TSS (NM_011346)	-639.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	2.88631903966164	2.80981107843118	2.99057769094632	2.85372549052366	2.91919327341144	3.17411279696978	0.428417673379474	0.539065076008725	0.855750032878982
Merged-chr7-19678330-2	chr7	19677830	19678830	+	591.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277944)	promoter-TSS (NM_001277944)	-389.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	2.50116873678648	2.59303623891195	2.69117557732559	2.51629792498233	2.48493436248404	2.70369134690094	-0.15826058165913	0.838191122680069	1
Merged-chr13-97442508-4	chr13	97442003	97443003	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	7533.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	4.93010012111729	4.78460868486026	5.13576597346689	5.49407350345333	5.51470443755633	4.94898101626778	0.860985994719442	0.0299286863393008	0.208594399805357
Merged-chr10-94478018-4	chr10	94477529	94478529	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-36828.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.95877424830415	6.87238476204878	6.67331065137348	6.85651348680272	7.14600055210138	6.30704114269106	-0.0205592074872864	0.94797890086723	0.988024000499268
Merged-chr3-19310232-4	chr3	19309751	19310751	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1071.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	4.85785212276441	5.12170814033453	5.2243643260806	5.08918190586628	5.20840598302826	4.9084397900798	0.029615051811962	0.938375526350593	0.986378534817306
Merged-chr16-95929779-4	chr16	95929318	95930318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040484)	promoter-TSS (NR_040484)	-741.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.69752283142288	3.72983725579304	3.75537240761391	3.72923269515054	3.59955838835051	4.14645441042063	0.350072941409623	0.531391125830579	0.851584549697133
Merged-chr3-100999155-3	chr3	100998663	100999663	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-29500.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	3.02887568648631	3.0255003483395	2.98070308358052	2.8490778129164	3.02338444810529	2.66670983206271	-0.717048463450933	0.338165873666897	0.728064429944456
Merged-chr5-101971608-1	chr5	101971108	101972108	+	995.0	f1_balb.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	98313.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.50997181188842	4.51928921927505	4.89940543823748	4.6512514158293	4.68402127368733	4.78736810107298	0.149141248951621	0.723140019601329	0.928989158354973
Merged-chr9-48532903-4	chr9	48532389	48533389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37546.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	5.79564697384661	5.5465449981229	5.72370938236916	5.59651463648068	5.44406337608058	5.78520988661259	-0.160340290658041	0.626141337296396	0.892819497179456
Merged-chr11-69365791-2	chr11	69365291	69366291	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	3635.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	6.07882217078429	5.94263637850207	6.43124870294789	6.63377698606711	6.64998206519025	6.49075729651644	0.728948617892558	0.012184451528312	0.115419381007262
Merged-chr1-153895182-4	chr1	153894693	153895693	+	743.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3547.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	3.21703302002975	2.83537210220576	3.14806921980276	3.04031194980361	2.90599914650404	3.21960862114553	-0.0879343191281292	0.899874329489219	0.976728292075907
Merged-chr13-81239045-2	chr13	81238545	81239545	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274971.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.21348642443468	3.30880761513227	3.20822370026847	3.38475204036837	3.09540920396191	3.03526600887171	-0.262220995983582	0.687758717149084	0.917193226920892
Merged-chr9-121717381-2	chr9	121716881	121717881	+	994.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-1800.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	3.32133301448834	2.91739341607821	3.57624732672767	3.2886262867088	3.21264181186547	3.335301123773	-0.0692633600149363	0.919656430303802	0.982077636922415
Merged-chr18-84682038-4	chr18	84681538	84682538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	21.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	7.80754208899849	8.02711439254895	7.57601916881797	7.78978793239755	8.13790049520553	7.52978195484883	0.0438403643433629	0.871163601041125	0.970222087171093
Merged-chr3-121570331-2	chr3	121569831	121570831	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37987.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	4.22032584584892	4.00580117495627	4.23724372615163	4.49696577425379	4.37414115902555	4.16382429786285	0.550898897508041	0.241673143700238	0.638790944758875
Merged-chr15-6403605-3	chr15	6403110	6404110	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	16862.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.50117651901581	5.00577265215809	5.06867148739828	5.25531895543015	5.30275220533416	5.45393062999384	0.232942888072662	0.536991948031936	0.854259172389663
Merged-chr11-70446877-4	chr11	70446379	70447379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5052.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	7.13831536058074	6.86714450476725	7.08609888540812	6.93104895673739	7.13948195970698	7.22797042120887	0.105630330013858	0.67636578559264	0.912525597578286
Merged-chr6-72155246-4	chr6	72154686	72155686	+	836.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011375)	TTS (NM_011375)	-31989.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.78626078316785	4.7535245942564	5.00406661802112	4.79736644283061	4.45254502841601	4.96799531711212	-0.233338120809386	0.581703446124882	0.873425292899358
Merged-chr19-47841364-3	chr19	47840861	47841861	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-4000.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	3.07116437083161	2.99186685914937	3.21137374802473	3.40620569748737	2.99155777142787	3.1681425510569	0.463121869208983	0.489121023554781	0.829459847891797
Merged-chr7-24300948-4	chr7	24300419	24301419	+	963.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199321)	TTS (NM_001199321)	-1370.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	3.6185199571716	3.83513720927137	4.36609651182437	3.9522922209398	3.54469497908936	4.35558855533879	0.0464777627752079	0.940703610469171	0.986881313555047
Merged-chr1-156558716-4	chr1	156558220	156559220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009595)	promoter-TSS (NM_009595)	-67.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	7.71825807926005	8.00160967892723	7.72859867275881	7.66210788622815	7.95755746307403	7.71377249261207	-0.0531616504841605	0.82249451916441	0.958097562158607
Merged-chr6-21958278-4	chr6	21957778	21958778	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	8663.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	5.49612136764629	5.79842218824754	5.21233891647407	5.6425219833199	5.52906909116541	5.90118078383168	0.284387223000852	0.432740486902283	0.797472325349157
Merged-chr4-147337031-2	chr4	147336531	147337531	+	973.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	L1_Mus1|LINE|L1	161165.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	4.01290831703732	4.54639767925982	4.12960018160844	3.99424276173198	4.02761501762715	4.68635036896486	0.0399717983173785	0.942136359234433	0.987097394617189
Merged-chr4-148449150-4	chr4	148448624	148449624	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020009, intron 1 of 57)	intron (NM_020009, intron 1 of 57)	542.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	6.46482975066532	6.50813181964141	6.37915032427337	6.7148087953917	6.78175854973964	6.23058377295923	0.25150030337614	0.38716976139723	0.767462350491678
Merged-chr18-60740578-4	chr18	60740089	60741089	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	6157.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.54064532164668	4.4121031390593	4.72497661700461	4.46201420446693	4.21384471920039	4.34752681847973	-0.552309178498427	0.215716138472018	0.609112973600893
Merged-chr11-87020524-2	chr11	87020024	87021024	+	948.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26762.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.90037611038949	5.83468937295019	5.92626424615438	5.88499499867546	6.15151354030622	5.81396397521109	0.150524592416207	0.622963373448617	0.891251075175817
Merged-chr6-15025526-2	chr6	15025026	15026026	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053242, intron 2 of 18)	Lx3A|LINE|L1	124177.0	NM_053242	114142.0	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	2.26068888209329	2.3573615792962	2.56061919661245	2.21807168561057	2.01670398487385	2.32321387458531	-1.47572948719502	0.115412466514825	1
Merged-chr10-93268524-4	chr10	93268035	93269035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	L1MB3|LINE|L1	42624.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.00419652154064	5.37133149375783	5.20851492084188	5.01552891473827	4.96402347365683	5.33299638148079	-0.211676558982133	0.578626650436068	0.872437129840066
Merged-chr13-113515281-4	chr13	113514788	113515788	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.54523663199879	4.41710566384006	4.15824727505959	4.1865147215743	3.9326561623826	3.97240981092904	-0.990544310755995	0.0427196600906667	0.259177358864323
Merged-chr10-121366671-3	chr10	121366182	121367182	+	941.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	PB1D9|SINE|Alu	1592.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.38070868013028	7.4950439907997	7.05602309910631	7.94730373259942	8.2067943067428	7.64746292186011	0.909917819704543	0.000696819310438858	0.0136265431687418
Merged-chr3-58692265-4	chr3	58691746	58692746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045167)	promoter-TSS (NR_045167)	142.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	8.37468033937935	8.24250567370941	8.03943640935073	8.26861954753781	7.94629577447891	8.07357017321212	-0.181362467319541	0.429647510581259	0.795844038655538
Merged-chr5-117417619-4	chr5	117417127	117418127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	3625.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	7.67583419969023	7.36391142135751	7.33009258134974	8.10395823007361	8.01136161931131	7.66055085002052	0.682677583218922	0.00691834556704864	0.0774155053715685
Merged-chr13-23430932-4	chr13	23430426	23431426	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	91.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.49682220006367	5.12184729712554	5.55300953401786	6.05919109671309	5.87245402488217	5.67194250142103	0.900075569150401	0.00906219100917478	0.0939973559575437
Merged-chr2-6580320-4	chr2	6579866	6580866	+	907.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	141296.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.27299186379903	3.55439074614154	3.37400696846141	3.26702534870464	3.28967367075625	3.7511885408033	0.148515092838344	0.814946282189122	0.956370078970016
Merged-chr14-33246675-3	chr14	33246181	33247181	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	29858.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.89509616992923	6.33318625715901	5.98554066207471	5.11468299214808	4.96406906267934	5.42593620038194	-1.74070355746452	9.11932464848549e-07	4.99539674358908e-05
Merged-chr16-76053751-4	chr16	76053232	76054232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52948.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	5.24361854393576	5.31161263214355	5.23662707119425	5.14332403105728	5.37585627141207	5.23538785892256	-0.00961064205072484	0.978049790011496	0.994994154947079
Merged-chr19-37561695-4	chr19	37561194	37562194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	11276.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.4990369993431	5.54641224279066	5.46656249871782	5.69739569358164	5.72979005604453	5.49990603664216	0.276559009153673	0.390682721888217	0.769855726871472
Merged-chr5-141084929-4	chr5	141084410	141085410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84314.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.54871582164108	7.75521328714847	7.45718014183433	7.67796077968248	8.01048009800615	7.56578936687837	0.254557060501379	0.308779155992766	0.704725876675794
Merged-chr15-89429481-4	chr15	89428977	89429977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 1 of 27)	non-coding (NR_004843, exon 1 of 27)	450.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	8.36865733354408	8.92975533823243	8.32305170987973	8.33994297659814	8.66280733831037	8.27726869042076	-0.187304981358497	0.481203187122024	0.824953741430059
Merged-chr3-75277650-4	chr3	75277162	75278162	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.9785594716652	3.77644318990249	3.75931317796135	3.52697550602478	3.5611558128406	3.67208609407288	-0.884057390605267	0.106389184479753	0.435501119800819
Merged-chr12-100203588-4	chr12	100203073	100204073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	3429.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	5.9073458143296	5.87013882897969	5.47506783720012	5.72635784858415	5.63086665473708	5.62698806308887	-0.212327622436195	0.517308310731599	0.844527792582824
Merged-chr19-55645202-2	chr19	55644702	55645702	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	B4|SINE|B4	57002.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.80530660357507	3.60771532256439	3.91510687470472	4.02024661672659	3.91139590010614	3.88553527846678	0.524352172532099	0.316000538361949	0.710181849503593
Merged-chr5-124477342-4	chr5	124476846	124477846	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	889.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	7.66265318682432	7.50957040897617	7.10174493953775	7.58560322649928	7.95008025550128	7.71758039294947	0.446931888203513	0.0924787592909019	0.405125772600537
Merged-chr1-132009277-2	chr1	132008777	132009777	+	903.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	intron (NM_007923, intron 1 of 4)	1672.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	5.66191384708882	5.5540678360576	5.48356305152056	5.78739213016342	5.89979460602922	5.60626997194228	0.379547633856268	0.236524447483123	0.632745673713476
Merged-chr11-50276080-4	chr11	50275565	50276565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B4A|SINE|B4	16271.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	6.02263703062192	5.74679942169939	5.8088426743258	5.96113435007404	5.86615115496821	5.53376614211046	-0.102353875913297	0.752683993183752	0.938355947571674
Merged-chr2-52937903-2	chr2	52937403	52938403	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80035.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.43827476754441	7.50135543299698	6.94918107864232	7.23728266035504	7.5482128033605	7.036617855666	-0.0404084367737593	0.887641846747721	0.973836995667151
Merged-chr4-3649204-4	chr4	3648709	3649709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.76112274988766	7.60392795452583	7.35322457531325	7.47508548907224	7.96766099844698	7.57009828636141	0.155479655442974	0.556134370092568	0.86357390983939
Merged-chr6-149189495-2	chr6	149188995	149189995	+	700.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-783.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	4.26821739122193	4.28079573665665	4.24270238335254	4.15776539227024	4.37793090025747	4.21828934722296	-0.00990725856391221	0.982753959347886	0.996084390562607
Merged-chr10-25200173-4	chr10	25199679	25200679	+	790.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347460)	promoter-TSS (NM_001347460)	-9.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.39308481407094	2.38875042889103	2.65912177201407	2.41760595531528	2.1488150475698	2.42414025962508	-0.959815111532085	0.272317602141324	1
Merged-chr7-99184921-2	chr7	99184350	99185350	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	2.23356783454936	2.16431184749651	2.37346113365912	2.25418169300382	1.99509414623893	2.25515361426112	-0.614357989353216	0.499592205350129	1
Merged-chr12-38864211-4	chr12	38863776	38864776	+	980.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	80565.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.41332012563737	5.97785871413792	6.52562740457007	6.17611086916095	5.88407033534282	6.43338370434182	-0.245642914510577	0.457763280824935	0.812525429217996
Merged-chr11-100712454-4	chr11	100711988	100712988	+	881.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020004)	promoter-TSS (NM_020004)	-21.0	NM_020004	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	4.51012918561359	4.28328723083513	4.87528005945529	4.58472302045217	4.30667460339009	4.0104554962637	-0.616409677860727	0.225509863775205	0.620447211503552
Merged-chr2-152691633-2	chr2	152691133	152692133	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 7 of 11)	intron (NM_010376, intron 7 of 11)	4485.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.67736225303256	3.70274294727116	3.77529412332613	3.61478394339589	3.43568083665896	3.79509682151265	-0.355407286004087	0.524637501389937	0.848752537154544
Merged-chr8-35666008-3	chr8	35665515	35666515	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 2 of 2)	intron (NM_001081279, intron 2 of 2)	-76995.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.41326606368172	3.31904660659616	3.28244615058047	2.92621132721888	2.7498105479317	2.86775667122063	-2.48034415580865	0.000793423383063047	0.015078317864377
Merged-chr5-103678333-4	chr5	103677821	103678821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22589.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	4.56893265817271	4.60116717165703	4.87474675556254	5.14615346349408	5.09745440350661	4.90344737706636	0.853974535294192	0.030355439492636	0.210484407470555
Merged-chr12-108637201-4	chr12	108636697	108637697	+	918.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	1444.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.28921242014852	7.44708156096346	7.54207020857081	7.47876897611628	7.53599611068425	7.56069338152208	0.145230759284717	0.524292511701622	0.848650426908011
Merged-chr5-41525153-4	chr5	41524652	41525652	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	182539.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.70604726474546	4.58823047873194	4.90625302867951	6.18722449714964	6.35134034591822	5.90570789619038	2.85127675128607	3.03285081985179e-15	8.64237845952833e-13
Merged-chr11-6299681-4	chr11	6299213	6300213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	B3|SINE|B2	7134.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	6.24567982831434	5.86061921679482	5.74479827925218	6.08508158626286	6.41234688320651	6.12874584305599	0.418046317244004	0.195374335101578	0.583020169139918
Merged-chr12-111454226-3	chr12	111453750	111454750	+	709.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009396, exon 12 of 12)	3' UTR (NM_009396, exon 12 of 12)	11589.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.66348350202217	4.00729842827141	4.18520813359881	4.12499987146436	4.20090269526647	4.45807151771283	0.85708735150222	0.100265874211273	0.422231456270955
Merged-chr5-121838829-4	chr5	121838348	121839348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	8.54541818373778	8.61539455582511	8.30490832312464	8.09765497009735	8.43533044511546	8.29224282167779	-0.298731755697894	0.186022242834134	0.570490151177304
Merged-chr5-135569519-2	chr5	135568988	135569988	+	617.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019577)	TTS (NM_019577)	3561.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	6.6638835042363	6.4039957424827	6.79111770693045	6.00086129967747	6.33689178507435	6.12874690747346	-0.738705318030102	0.0124867646086345	0.117543722499159
Merged-chr11-101708641-4	chr11	101708130	101709130	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24326.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	4.24402277880373	4.25957242999627	4.36924081006571	4.12007795711577	4.17272230840028	4.35139906104659	-0.206960853985563	0.652179304195329	0.902896807825606
Merged-chr10-121506808-4	chr10	121506287	121507287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30537.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.97303746671758	5.87127187757549	5.67488422811539	5.74299150035168	5.63958031399804	5.33789040552639	-0.469207275445077	0.156955401928712	0.527816433819287
Merged-chr19-41337046-4	chr19	41336525	41337525	+	841.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	48045.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.37209101426065	6.13479465602051	6.23716788446535	6.52238517605537	6.49965832545603	6.43427605578441	0.386493276917852	0.156195363456195	0.526509692545705
Merged-chr7-34198545-4	chr7	34198035	34199035	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1865.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	3.34570232946019	3.39725947322157	3.49392986816567	3.58827531515068	3.30028965931269	3.45603678642796	0.151056905813292	0.79926146209126	0.95224724710323
Merged-chr4-102576552-2	chr4	102576052	102577052	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	ID4|SINE|ID	6492.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.08028780589618	4.33015030265542	4.62035299678296	4.33587414964552	4.22276181348849	4.45369912575038	-0.0452609728368865	0.924343818460846	0.982960139621551
Merged-chr17-84204297-3	chr17	84203802	84204802	+	757.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 36 of 37)	ORR1D2|LTR|ERVL-MaLR	-16355.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.93145745187072	2.72619945597638	2.93674484250323	3.01795072749358	2.61754926832067	3.00963336695682	0.120343490010497	0.872144478912021	0.970261003150518
Merged-chr9-98297593-5	chr9	98297208	98298208	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	1138.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	7.17027494673793	7.87669223886916	7.28395351457606	6.97456136418873	7.11110901448672	6.74581118713412	-0.791489379897778	0.00834001847965452	0.0886731737356368
Merged-chr15-27922383-4	chr15	27921870	27922870	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	103478.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.76343507274156	5.70876737793278	5.38700723825173	5.74144817712509	5.48311465122937	5.51348410115199	-0.106642597837022	0.751718115538084	0.937976470835913
Merged-chr13-59556775-2	chr13	59556275	59557275	+	866.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001284219, exon 1 of 25)	5' UTR (NM_001284219, exon 1 of 25)	147.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	5.50392642026148	5.1666355263166	5.30561135583504	5.50196524743734	4.8961243997803	5.24162557353851	-0.203214744440658	0.602848363605924	0.882397657327329
Merged-chr16-91456781-4	chr16	91456240	91457240	+	786.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-8364.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.45613224184207	6.26739077654291	6.45975217171294	6.85050932376936	6.87126898277684	6.79989438740152	0.714516706378589	0.00562273711827812	0.0665843247915672
Merged-chr11-106740802-2	chr11	106740301	106741301	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-10425.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	4.94412509427781	4.39423245217051	4.98415483404524	4.91407679368198	4.81263040724551	5.17607892947113	0.383956691880821	0.37973121991666	0.762043995600429
Merged-chr16-20651671-4	chr16	20651187	20652187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027485)	promoter-TSS (NR_027485)	35.0	NM_134101	21762.0	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	5.97719113526584	6.01259413661427	6.17960562605679	6.05473660762725	5.99159914557496	5.83029906002044	-0.146800588064432	0.619689386306476	0.889868376148509
Merged-chr16-44032582-4	chr16	44032035	44033035	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	-4590.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	5.58590251142815	5.6744703287011	5.7680622800657	6.55778014547337	6.57384132197205	6.29147266301595	1.39677720986653	1.75679256582847e-06	8.85397915308632e-05
Merged-chr12-103332472-2	chr12	103331902	103332902	+	731.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 6 of 9)	MIRb|SINE|MIR	17443.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	4.18246918197901	3.9987232362792	4.21016581123242	3.9689291213354	3.92382190573722	3.84406624192814	-0.634921798769262	0.201367076379989	0.590983018025152
Merged-chr4-116175898-4	chr4	116175400	116176400	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2528.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	5.00957989434025	4.96723092903504	5.18949348967819	4.91894803764311	5.1536104733915	5.1240489333305	0.043357622989578	0.907160253374521	0.978868492078838
Merged-chr5-135394574-4	chr5	135394079	135395079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-33.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	7.33815561243099	6.86166308586572	7.12474299717182	7.28894087222944	6.49096701180748	6.71270342238638	-0.371228932990319	0.249414573941018	0.646337575549666
Merged-chr4-3683876-1	chr4	3683376	3684376	+	653.0	f0_balb.idr	intron (NM_001111096, intron 1 of 12)	PB1|SINE|Alu	5755.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.33286357260099	7.14175141308744	7.22861409272237	7.5183592130382	7.71537052864819	7.86518438534048	0.685465803463982	0.00401194802586561	0.052038374331446
Merged-chr7-122258160-3	chr7	122257672	122258672	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30953.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.39879192935831	4.98037575175639	5.39678156858738	5.50603893405565	5.47130626878169	5.54518323793129	0.467289993141476	0.189238327063795	0.574868493270401
Merged-chr7-127932944-2	chr7	127932444	127933444	+	876.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 15 of 15)	exon (NM_001319147, exon 15 of 15)	-2831.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	2.56030525966389	2.82218570404177	2.84945226598599	2.40008953200207	2.34986292660425	2.42377155827284	-2.32020728824247	0.00787284361615391	1
Merged-chr10-8875413-4	chr10	8874902	8875902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	10668.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.08460489050616	7.94646134981491	7.68401867884335	7.83555009154686	8.03168512570427	7.69387862660432	-0.0772609591003616	0.748565607240401	0.937061013186316
Merged-chr15-76640023-4	chr15	76639523	76640523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183091)	promoter-TSS (NM_183091)	-94.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	3.83678011857637	3.89997940619392	3.87293006555883	3.96484524707017	3.58966869214427	4.0375062484722	-0.00276938229022958	0.995899292764631	0.998961028701257
Merged-chr4-152448796-4	chr4	152448297	152449297	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252655)	promoter-TSS (NM_001252655)	58.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	4.94748372778651	5.42428003828537	5.43946995976569	4.83410863868067	4.55501273978374	4.82776828540151	-1.18704576015475	0.00367155872748713	0.0488258044744684
Merged-chr13-34255414-4	chr13	34254917	34255917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89765.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	7.35202439580596	7.35486283884156	7.1927454778758	7.08315944055322	7.45630715684892	7.12445787778546	-0.0954210818417626	0.704065735765642	0.922363248706409
Merged-chr7-43564776-4	chr7	43564263	43565263	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001008549, exon 2 of 5)	5' UTR (NM_001008549, exon 2 of 5)	2393.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	4.36798395260003	4.40909266490848	4.26270862873349	4.43049126698375	4.4206817406501	4.23654270513055	0.0497432552992987	0.911292367057748	0.98004232415071
Merged-chr12-110777252-3	chr12	110776762	110777762	+	641.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	B3|SINE|B2	39330.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	5.60561592785535	5.82522983238306	5.64487464647031	5.90623762836327	5.65435952282794	5.56496460129683	0.0379539576131115	0.906931116924167	0.978868492078838
Merged-chr16-90743377-2	chr16	90742877	90743877	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	PB1|SINE|Alu	5053.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	5.03186527622819	5.12735886377188	5.15190480520638	5.19435382435135	4.78885029557595	5.33821514542874	0.0239553175359329	0.951097324986018	0.988640991339789
Merged-chr4-151860774-2	chr4	151860283	151861283	+	946.666626	f0_balb.idr|f0_c57.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	985.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	5.94496654029857	5.45239451824406	5.61838841074805	5.92206687752703	5.46650235052413	5.8121035661287	0.0900530642704959	0.799609265240026	0.952263864378888
Merged-chr10-69186451-4	chr10	69185961	69186961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22091.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.27737053591334	5.28242966114832	5.52647495758081	5.62391942058935	5.66843840505287	5.74622127008335	0.611614781711256	0.0624773456764447	0.324918663551563
Merged-chr12-3424337-4	chr12	3423846	3424846	+	950.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	2401.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	5.01495564469739	5.05759370812086	5.39986371589077	5.40071425911445	5.25837774412577	5.54457982125531	0.486921253474886	0.181445073845186	0.563787133106409
Merged-chr7-88277388-4	chr7	88276907	88277907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-678.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.95348300826319	8.0766947292141	7.87824714621046	7.6857564878132	8.09596172668616	7.44400673143032	-0.272973147838024	0.298162991476607	0.694988207181153
Merged-chr5-123863208-4	chr5	123862690	123863690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030701)	TTS (NM_030701)	2326.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	7.92500681707684	7.84971245660322	7.21392901894779	7.91570147906231	8.34181590580938	7.72376227770122	0.453207398620348	0.131144914714687	0.484001865678154
Merged-chr3-8734045-4	chr3	8733578	8734578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67040.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.77182391825141	4.87027895185586	4.36138490762059	4.40663930988233	4.49232137078298	4.12539592839642	-0.822646529429987	0.0823078567506974	0.379332363801987
Merged-chr1-60409571-4	chr1	60409074	60410074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198571)	promoter-TSS (NM_001198571)	-45.0	NM_001198571	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	4.9885298798433	4.91582096417969	4.87250645124999	5.11092163885477	4.85921659685709	5.1800938324455	0.254028321525946	0.505316382019787	0.838055364884185
Merged-chr8-22858966-2	chr8	22858466	22859466	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-573.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	6.2592797154369	6.37320603349036	6.27055789304418	6.57374115848608	6.39786194780431	6.50049577116627	0.30335959251679	0.260077406430055	0.657639335234922
Merged-chr8-105304824-2	chr8	105304324	105305324	+	693.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172760)	promoter-TSS (NM_172760)	-777.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	4.20747426627784	4.25520138951373	4.56475839420781	5.05012310656009	4.69353713662628	4.93126196896255	1.34484032274766	0.00212196355620892	0.0323022948380958
Merged-chr13-56129717-3	chr13	56129215	56130215	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	5835.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.3845081089629	3.07543579750255	3.27459405372635	3.44850094357981	3.39501902022763	3.1671477498849	0.38206757875635	0.550967908508864	0.860915014090791
Merged-chr2-11299529-4	chr2	11298989	11299989	+	939.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 17 of 17)	intron (NM_008859, intron 17 of 17)	-40000.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	3.98933382115192	3.82330344964695	4.11958234200208	4.02281841566434	3.86242109384976	3.90380815730726	-0.139726641307113	0.783255229311922	0.947008153452287
Merged-chr3-108148065-4	chr3	108147571	108148571	+	965.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1919.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	3.66421360899154	3.523267863047	3.66430934465915	3.95507055926367	3.75204400788334	3.78692837601634	0.733908714427384	0.174243434492473	0.553403610743454
Merged-chr5-135191841-4	chr5	135191351	135192351	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	4528.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	3.63950893338524	3.75611924555449	3.90166231627182	3.78138478345014	3.37312177966271	3.44645098427439	-0.75673357458327	0.196860321609217	0.584754678471847
Merged-chr11-19924348-4	chr11	19923842	19924842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033523)	promoter-TSS (NM_033523)	-100.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	8.33587930336841	8.40883288053622	8.0787592863268	8.17233528782836	8.26731272566247	7.89422305455878	-0.224126438928081	0.336515389802655	0.72653508721162
Merged-chr6-87810453-2	chr6	87809953	87810953	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-696.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	7.91808029093441	7.86909561148767	7.80182334475916	7.71194047340331	8.03357947271186	7.86636297869986	0.0223618268610094	0.920641359093231	0.982463724790289
Merged-chr7-101935257-2	chr7	101934757	101935757	+	796.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	3.86886073672274	3.74480559658939	4.3053298281523	4.0480087451021	4.02014815038007	4.56066054071802	0.677338369704454	0.216936700049053	0.610549109497049
Merged-chr5-108248727-4	chr5	108248227	108249227	+	912.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-20170.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	3.55369127972022	3.48645184626643	3.36759936040757	3.36105985093373	3.2598439212466	3.89295318316894	0.194490493787037	0.760010284293796	0.940572672765463
Merged-chr13-81231738-2	chr13	81231238	81232238	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	267664.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.33877568336468	4.52183043476998	4.71213455322062	4.00964515449182	4.32689110188745	4.34468626562553	-0.752212758578324	0.110832698057935	0.444841551070303
Merged-chr3-94583135-4	chr3	94582651	94583651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-435.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	7.66942637359594	7.51300981864076	7.42887984704119	7.50344252683171	7.64708380136015	7.55716810905386	0.0401690948321834	0.859899387149362	0.967435965660262
Merged-chr10-8871801-2	chr10	8871301	8872301	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	14269.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.98026034084497	6.88792856188689	7.03312789859806	6.57329308856486	6.60650630173455	6.83314137228167	-0.462284481320836	0.0687798284105267	0.343101021477383
Merged-chr7-113207280-4	chr7	113206767	113207767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007489)	promoter-TSS (NM_007489)	-198.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	6.34271340392906	5.91645841850273	6.38935827055294	6.16749685288093	5.85151557325622	6.2231046906158	-0.24589301180263	0.441703390295893	0.802858484419168
Merged-chr11-16669931-4	chr11	16669443	16670443	+	909.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82260.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	3.96539813697159	4.05246061984554	4.46549677087747	3.91626344448359	4.18515782862732	4.06505148330499	-0.29694099569267	0.563489653416304	0.86598876607666
Merged-chr17-47522659-1	chr17	47522159	47523159	+	931.0	f0_balb.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	17608.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.53789260326996	5.73436682704482	5.51513457452557	5.06357672259612	5.21037158460756	4.98240037350554	-0.996252184962503	0.00475352356393171	0.0591846758503111
Merged-chr19-5631225-3	chr19	5630738	5631738	+	647.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6252.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.18232945247965	3.1870291918418	3.26504624127284	2.64668675258087	2.63367141493583	2.74082572346674	-3.09288027795615	0.000215337559566236	0.00531370333819317
Merged-chr10-118862924-4	chr10	118862419	118863419	+	791.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5984.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.83390561592328	5.92769697020927	5.80334809967597	5.55444647425519	5.58018368878671	5.8647028572193	-0.35551601431584	0.258771941538154	0.656295597544882
Merged-chr2-35162366-3	chr2	35161864	35162864	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 30 of 43)	intron (NM_012018, intron 30 of 43)	30130.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	5.95177873949606	5.77117471308373	5.52056074190014	5.61068276530897	5.69597058945668	5.52369187981289	-0.279016857559473	0.396581548446413	0.773692468714195
Merged-chr10-19629091-1	chr10	19628591	19629591	+	563.0	f1_balb.idr	intron (NM_178258, intron 3 of 4)	L2b|LINE|L2	7063.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	3.11915903332088	3.03979414631033	3.17105423780497	3.20141255501762	3.08472627919298	3.35152791011911	0.442755682387825	0.491164416760211	0.830447418157472
Merged-chr18-79284187-4	chr18	79283660	79284660	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174769.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	4.03255894229881	3.84428092032761	4.02914556944829	3.95569360855999	3.84079990775856	4.00280239568448	-0.118895810018628	0.813142411320448	0.955933854959943
Merged-chr1-152540004-4	chr1	152539503	152540503	+	899.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 10 of 18)	exon (NM_001346119, exon 10 of 18)	85214.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.02991992352472	6.97366782819246	7.02837984467859	6.99370865492257	7.15439150201717	7.09914732241296	0.115686198248631	0.626862347784165	0.892975730763041
Merged-chr17-4840330-3	chr17	4839820	4840820	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154754.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	2.54227132845024	2.56352990149392	2.65905141816372	2.38467334443909	2.51178449351671	2.6096188772651	-0.493750463286881	0.530762767040513	1
Merged-chr18-36483355-3	chr18	36482849	36483849	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-28854.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	4.08674580056347	3.58653564245082	3.77834642796096	3.65479040864674	3.33069083122069	3.58252056188489	-1.06442048384641	0.0740378764647351	0.357899300529169
Merged-chr1-16103953-2	chr1	16103453	16104453	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011291, intron 1 of 6)	intron (NM_011291, intron 1 of 6)	480.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	5.60939718968492	5.8516793307141	5.42888605834929	5.7945306257816	5.94009483330729	5.46131158560748	0.196620496391759	0.571604732838716	0.869547320544841
Merged-chr10-49075626-4	chr10	49075116	49076116	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	712321.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	4.67050660275177	3.62344909928733	3.96643071152327	3.70326342440885	3.4637941262439	3.71905197449184	-1.64635633561299	0.00904728343062254	0.0938662037283452
Merged-chr1-106797548-4	chr1	106797093	106798093	+	904.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	-868.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	5.29100402699468	5.23300600515943	4.9731710429179	5.51524841807557	5.48432703011256	5.29033381802166	0.506347335730769	0.154548924947894	0.523877774629424
Merged-chr1-153931415-1	chr1	153930915	153931915	+	623.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	31486.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.84514515222958	3.86878954837708	3.91115484359519	4.00150906095364	3.6442188305545	4.2490915953748	0.317137072996853	0.559921662081583	0.865168019835518
Merged-chr15-59819330-4	chr15	59818793	59819793	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24334.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.25601306800192	6.19714716899059	6.08925634404392	6.35445235918579	6.45484392637957	6.29875091193339	0.313331146824601	0.255881906658102	0.652867953552546
Merged-chr9-85357615-4	chr9	85357122	85358122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30472.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.564914506472	6.63886566289846	6.28688912400183	6.49587010296765	6.59841450382007	6.02596051759127	-0.165263377819108	0.590959995187115	0.877301111216348
Merged-chr7-24662733-4	chr7	24662224	24663224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030681, exon 2 of 2)	non-coding (NR_030681, exon 2 of 2)	1430.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	3.47728159677331	3.55036377973786	3.37612490034308	3.50858623830622	3.27213440274224	3.33196369390692	-0.385433337531608	0.520038819291453	0.846136492496092
Merged-chr19-61229144-4	chr19	61228631	61229631	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-713.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.77975592242525	5.80036062269106	5.36496558545921	5.76453016524323	5.7774877197358	5.6155287918202	0.0887806011334651	0.789688674585135	0.949296645885173
Merged-chr8-127776734-2	chr8	127776234	127777234	+	617.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	477082.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	2.49116450405521	2.55916553198502	2.5294251631358	2.59327824227149	2.62063435928112	2.90631572149666	1.02299324632124	0.189208267975921	1
Merged-chr6-128437893-4	chr6	128437389	128438389	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	767.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	5.81602070904644	6.14743726253481	5.94696539740913	5.93031580238182	5.56457244409387	5.49737007004419	-0.532629654008951	0.108791523101454	0.440716896505638
Merged-chr4-137879788-4	chr4	137879245	137880245	+	966.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	17508.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.29005958215629	3.5084930317483	3.75003022797403	4.19791155552915	4.22182761068102	4.59927317308248	2.68990637815479	5.65602175913042e-06	0.000245373440319981
Merged-chr3-75281026-2	chr3	75280526	75281526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10948.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.90529047329376	3.89320731278543	3.74030805167119	3.76526944471827	3.7421804443158	3.91190704114328	-0.162273137105503	0.755666809358467	0.939400440743942
Merged-chr12-28675375-4	chr12	28674897	28675897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134052, intron 1 of 3)	CpG	190.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	6.85855022825094	6.83050179842246	6.76025000138644	7.49453271824716	7.43147300750026	7.05591066405069	0.800494336177226	0.00172907060943146	0.0276412117712917
Merged-chr1-95339820-4	chr1	95339324	95340324	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	26196.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.78575209913235	3.86856582215167	3.81613321210136	3.8107332109551	3.89993233695074	3.55668087311096	-0.162587862756932	0.764380597430399	0.941979298344481
Merged-chr11-73138336-4	chr11	73137846	73138846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010353)	promoter-TSS (NM_010353)	-52.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	5.58281924474998	5.70152261598273	5.59139239224474	5.6143359186079	5.61483218466102	5.78481627271309	0.0705467791656178	0.823414338938965	0.958366850481353
Merged-chr5-72204733-4	chr5	72204248	72205248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1405.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.44666012374677	6.77664518222511	6.58680931735447	7.17345047934263	7.2240058411111	6.85781592107786	0.755957208036395	0.00507119798153681	0.0617629159320425
Merged-chr8-4115405-2	chr8	4114919	4115919	+	585.0	f0_balb.idr|f1_balb.idr	Intergenic	L1M4|LINE|L1	-9655.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	2.84302350856836	2.85069745687208	2.98770199073428	2.59529182346906	2.76440554979156	2.76302607451388	-0.944002176434694	0.201118564664006	0.590644904075377
Merged-chr2-72373068-1	chr2	72372568	72373568	+	706.0	f0_c57.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	87367.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.63863455585904	3.1982102165419	3.42489702972651	4.3825607059232	4.34998758389614	3.96649059975668	2.72954400450826	1.587410658787e-05	0.000597130497723094
Merged-chr15-89591900-4	chr15	89591376	89592376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026817)	promoter-TSS (NM_026817)	47.0	NM_026817	68708.0	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	3.19498340164769	3.23936745110257	3.09809549355651	3.18806496939649	2.91529509346771	3.22898165129535	-0.302515648148853	0.648385885055836	0.901766609676507
Merged-chr5-76974168-2	chr5	76973668	76974668	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025691)	promoter-TSS (NM_025691)	-533.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	4.8388440922693	4.73975987423076	4.67831130698447	4.82376827566822	4.80064602225404	4.89790832956661	0.180833448664032	0.64347395241665	0.899820668306401
Merged-chr6-97818307-4	chr6	97817798	97818798	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	11240.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.56385822193996	6.40025219602123	6.62986772345624	6.16509493551087	6.34665684790731	6.37808944726244	-0.376663346655961	0.170104552015047	0.547374602613428
Merged-chr11-88205113-3	chr11	88204557	88205557	+	713.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291271, intron 1 of 4)	intron (NM_001291271, intron 1 of 4)	669.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	6.79671586471273	7.15442532681201	6.99643301175181	6.95964148537658	6.87554321922468	6.76346823974796	-0.184494778745635	0.475593012344882	0.822059938328444
Merged-chr16-50397475-4	chr16	50397002	50398002	+	912.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	34887.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.3859922743108	5.22212847916427	5.36766946520137	5.32853425441151	5.42761374468196	5.24107187883549	0.0349500383672612	0.918892170710641	0.981844538421417
Merged-chr10-127041294-6	chr10	127040741	127041741	+	883.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010792)	promoter-TSS (NM_010792)	153.0	NM_001205036	100504608.0	Mm.486142	NM_001205036	ENSMUSG00000080115	Mettl21b	Fam119b|eef1akmt3	methyltransferase like 21B	protein-coding	4.11355976662682	4.38641179127293	3.97570173169747	3.89005205344788	3.85793548218446	3.83584309291815	-0.941767606274385	0.0656903296948623	0.334370890882125
Merged-chr7-19360088-4	chr7	19359584	19360584	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-601.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	5.73796252502243	5.54721831978529	5.86926312132827	6.03582787952064	6.24715399639094	5.95471379441267	0.667598477295493	0.0317774531666387	0.216150804189643
Merged-chr5-100569521-4	chr5	100569019	100570019	+	817.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	2686.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.80221713885358	5.96038159197327	5.9721019097639	6.88266579161584	6.90073984106985	6.56808809830808	1.46047139871334	2.08294180619634e-07	1.36041932346927e-05
Merged-chr6-136659456-4	chr6	136658954	136659954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	2439.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.26944776703241	6.37518560920947	6.1535318365388	7.33817891398935	7.46510952243429	6.66270259277197	1.46070999178284	2.54332791634329e-06	0.00012339663513883
Merged-chr13-67360599-4	chr13	67360113	67361113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038651)	promoter-TSS (NM_001038651)	-41.0	NM_001038651	629016.0	Mm.440800	NM_001038651	ENSMUSG00000098905	Zfp953	E130120F12Rik	zinc finger protein 953	protein-coding	7.32775548731482	7.55064938430917	7.49026836517312	7.45354003793135	7.47853161153309	7.31152131863669	-0.0559102611208302	0.809152494388817	0.954721853010197
Merged-chr12-76538083-4	chr12	76537582	76538582	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4522.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	7.34344011530991	7.45823665983959	7.59766095327976	7.51141598569764	7.81784562566566	7.62663799486102	0.286800534248717	0.225108328497742	0.620020317697454
Merged-chr19-18620590-2	chr19	18620090	18621090	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11223.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.24717220137511	4.79236088623048	5.08839963982264	5.02723741300674	4.7933011098665	5.0161171640593	-0.240892531126952	0.544012341090528	0.857551302506722
Merged-chr18-44757895-4	chr18	44757403	44758403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 2 of 18)	MTD|LTR|ERVL-MaLR	54279.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	5.63464064127882	5.58266334606367	5.89271692288063	5.50590575927029	5.39387871080556	5.9310582366016	-0.157501975023725	0.652538679704224	0.902986290245403
Merged-chr15-100663577-2	chr15	100663077	100664077	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	RSINE1|SINE|B4	5923.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	4.11436129628557	4.14617203398121	4.26757313898991	4.35262462950506	4.02791382585791	4.45999773853405	0.298564278483662	0.534549776543038	0.853068627162717
Merged-chr19-29470714-2	chr19	29470214	29471214	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021396, exon 6 of 6)	3' UTR (NM_021396, exon 6 of 6)	51273.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	4.20800511937756	3.74499692876181	3.98962375501901	4.07393536749773	4.05458577619395	4.10681515406428	0.235782533542184	0.645629157636461	0.900657290738149
Merged-chr10-8124297-3	chr10	8123794	8124794	+	793.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168171.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.77980401491655	3.84387260420283	4.12321516977986	3.48430460702741	3.73111114009198	3.72270300983845	-0.861398188795929	0.121435458683784	0.466173646273416
Merged-chr10-70225974-1	chr10	70225474	70226474	+	653.0	f0_balb.idr	Intergenic	Intergenic	-19302.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	4.2483366069157	4.44917538226592	4.45986067739784	4.37450646268394	4.46300771391317	4.72004335060805	0.336112119893735	0.449524028719925	0.807826775986513
Merged-chr11-68866771-2	chr11	68866271	68867271	+	735.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13640.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	5.20695476401283	5.31841168947194	5.07859615281487	5.13431131109476	5.07785782652128	5.10849425546689	-0.220750773582788	0.537071620448494	0.854305051501396
Merged-chr10-78372307-2	chr10	78371807	78372807	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-20607.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	5.95675344983906	6.15342291495965	6.36074149158697	5.7534985768789	6.14249842927571	6.1302533474711	-0.234532097708552	0.457619077758083	0.812373447305312
Merged-chr2-11192499-4	chr2	11192010	11193010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	7.74099755859236	8.08754907180306	7.81264717303283	7.96869135520863	8.52684555907089	7.90227082150326	0.398528704888709	0.141568387903549	0.502257195591213
Merged-chr10-37339797-4	chr10	37339298	37340298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200872.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.04864577978955	5.56422852802357	5.74411593144497	5.70909311880892	5.73877886309469	5.644421980387	-0.18807437115045	0.569940425311297	0.86897795487416
Merged-chr3-121603009-4	chr3	121602512	121603512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	40473.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	4.20903311005147	4.36755751907045	4.87072003605757	4.56354531443173	4.59957612027603	5.12082914486255	0.651099933538803	0.181274710303536	0.563574431883748
Merged-chr1-156661391-2	chr1	156660900	156661900	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	intron (NM_023141, intron 4 of 5)	12939.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	3.37585813453398	3.33073960957749	4.05576445274262	4.29666238116733	4.18194365620394	4.25637244957777	1.96419697402688	0.00165271605613687	0.0266768569542263
Merged-chr15-6389648-3	chr15	6389177	6390177	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	2929.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.90176580359203	4.84579173611822	4.90301475932166	5.11930760854278	4.44671148207373	4.89545931249614	-0.0843750731055889	0.844972069698952	0.963760118842549
Merged-chr7-27475713-2	chr7	27475158	27476158	+	725.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133210, intron 1 of 1)	B3|SINE|B2	1818.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	3.6613090337762	3.35328212005627	3.6936825842984	3.83194533824219	3.76131502582638	4.30183007892614	1.31211229433336	0.0251868440348589	0.187891959696301
Merged-chr9-110333302-4	chr9	110332803	110333803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103162)	promoter-TSS (NM_001103162)	15.0	NM_001103162	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	4.66990748502346	4.25375960132235	4.62506708970207	4.8046578652488	4.53069078841206	4.24489656620191	0.0636143128658669	0.892926892029368	0.975146620821922
Merged-chr9-42094891-4	chr9	42094396	42095396	+	995.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 3 of 47)	intron (NM_011436, intron 3 of 47)	-17683.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.23821544053657	3.15283216886216	3.25549033708154	3.09273289597068	2.93120320076166	3.09771935237527	-0.7865351474967	0.228597448640524	0.623827900248623
Merged-chr5-115487859-2	chr5	115487359	115488359	+	747.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-3375.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	3.82597683633041	3.53872308822376	4.1203289735717	3.88016013418306	3.96766985584843	4.00834798725058	0.345860897605227	0.528634245985175	0.850585575598857
Merged-chr18-80706804-4	chr18	80706302	80707302	+	922.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	1371.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.85073033555559	5.77679359597379	5.73296578769381	5.82806849286769	5.8888323158869	5.8710487268424	0.129922165301004	0.66486317119123	0.907721942545399
Merged-chr7-19696585-3	chr7	19696069	19697069	+	959.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1829.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	4.98473906963194	4.89816787899375	5.50246193599076	4.92689570955974	4.95441171624072	5.20072999325292	-0.244625752581302	0.547653423854367	0.859389836719927
Merged-chr15-37007466-4	chr15	37006983	37007983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026521)	promoter-TSS (NM_026521)	-81.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	8.43134531128359	8.32932293489718	8.00934333360572	8.3279646956818	8.00097763639848	7.97271030024401	-0.227559148850507	0.347194242255005	0.735337319817997
Merged-chr8-88646362-3	chr8	88645853	88646853	+	724.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-994.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	4.27123884742178	4.59864435462133	4.47017203346095	3.5113848826394	3.38561816613513	3.68836174821999	-3.17862309817453	9.74528927965547e-08	6.99039681363424e-06
Merged-chr19-16142668-4	chr19	16142175	16143175	+	970.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9844.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.65349413502843	5.56603168745786	5.68410163092914	5.38431679088578	5.46012010382776	5.66821462908007	-0.246667361039915	0.448956151978316	0.807468949805718
Merged-chr14-63123831-4	chr14	63123313	63124313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1351.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.43442906061118	8.33119291268162	8.105831179791	8.32009920094175	8.70655619439522	8.2033444775213	0.187007291446562	0.444718013583389	0.804489346571442
Merged-chr16-91456067-4	chr16	91455555	91456555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9049.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.99686842439546	6.75717523090122	7.04562242176295	7.40405136347982	7.09482044182136	7.48266269255756	0.59783383789984	0.0216360704574159	0.17021375617691
Merged-chr5-123393975-4	chr5	123393472	123394472	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-826.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	7.08471579039092	6.93578834517275	6.63392009794186	6.95733715240926	7.15045643227799	6.74431488116322	0.0971029004046903	0.72576010412176	0.929707128236285
Merged-chr5-73257315-4	chr5	73256851	73257851	+	919.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-733.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	5.14423187376721	5.33295094808102	5.67481019622198	5.46271886583352	5.40679488332615	5.41169370083873	0.0737119187290172	0.836464412475456	0.962001762335242
Merged-chr6-83632982-4	chr6	83632454	83633454	+	949.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	23162.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.51927395750775	7.71017984011285	7.87589706924306	7.41132332701666	7.74568210557297	7.25275651014376	-0.303432506820651	0.242900174807878	0.640158888947987
Merged-chr2-167948075-3	chr2	167947547	167948547	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	15720.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.92803833823797	6.35545279164427	5.9802507128066	5.70457714348444	5.73161819625787	5.6276943242252	-0.736196521857499	0.0211505631303666	0.167593187025192
Merged-chr5-124532143-3	chr5	124531636	124532636	+	884.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021430)	promoter-TSS (NM_021430)	-745.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	6.63100536964893	6.82577151164343	6.80591866251887	6.92306237545315	7.33890622131458	7.12382830646724	0.597495147825823	0.0228700127330375	0.176539470141001
Merged-chr18-77065792-4	chr18	77065302	77066302	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164168, exon 1 of 14)	5' UTR (NM_001164168, exon 1 of 14)	122.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	6.54298838410937	6.66915001933644	6.40126239270324	6.69712153180464	6.60612786429575	6.48011481530311	0.0820994605806477	0.758649340448732	0.940279948165012
Merged-chr11-54988151-3	chr11	54987660	54988660	+	729.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	B3A|SINE|B2	-25220.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	4.34027206207094	4.45847615576894	4.78141747479853	4.69799041500706	5.33316654035099	4.64899194940964	0.952738267753689	0.0411843663929372	0.253356743325316
Merged-chr19-3931922-4	chr19	3931402	3932402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2186.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	7.03268386850235	7.11278267919179	7.04011102324687	7.25465043095511	7.56181830088787	7.12446609250614	0.410332569205214	0.10466151638138	0.431742375443055
Merged-chr8-116975940-4	chr8	116975435	116976435	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	2718.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	6.51624313112661	6.75830548942341	6.36543450347379	6.32059217445191	6.47209702157125	6.1735382256747	-0.369460277648815	0.199153621571708	0.587526131669517
Merged-chr16-52091079-4	chr16	52090598	52091598	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	59549.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.30344645344757	2.97914550479889	3.30049025694162	3.23006699063062	3.32869877861361	3.37153267107707	0.451141364057841	0.48327634859198	0.826119594918973
Merged-chr5-100664239-6	chr5	100663745	100664745	+	844.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 2 of 6)	intron (NM_027978, intron 2 of 6)	10011.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	4.85653232722715	4.90380860274342	4.83738134198591	5.13389475076286	5.04441896121261	5.18205335296459	0.536871347389636	0.146867993947793	0.511279057836499
Merged-chr3-27302543-4	chr3	27302042	27303042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14535.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	6.58958955500918	6.94358383774289	6.84054309524657	6.8103247936745	6.89657319706085	6.71483485048508	0.0234731786097281	0.9289897693157	0.983977379981026
Merged-chr1-45907561-1	chr1	45907061	45908061	+	1000.0	f0_balb.idr	TTS (NM_016917)	TTS (NM_016917)	18033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.40877304500692	5.60591314631108	5.5812064928934	5.51809424059994	5.4485684597056	5.56068407897751	-0.0524133716577626	0.872499015161974	0.970261003150518
Merged-chr1-151657284-1	chr1	151656784	151657784	+	751.0	f0_balb.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	85911.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	3.63567785031163	3.54381572247149	4.09585581938212	3.66489369427694	3.51585392393613	3.65038756531724	-0.543822610701576	0.350837763519459	0.738815453164556
Merged-chr16-57183630-1	chr16	57183130	57184130	+	806.0	f1_c57bl6.idr	intron (NM_026254, intron 13 of 17)	intron (NM_026254, intron 13 of 17)	-16298.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	3.46769708334829	2.99898303283311	3.36296015637833	3.37013764989126	3.29929998081179	3.48800537083827	0.363138507024574	0.576657237829732	0.871679966670354
Merged-chr16-92402722-3	chr16	92402212	92403212	+	655.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2634.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.35759474984108	5.30496678953624	5.67501140450342	5.05064793941264	4.87846912866935	5.33755595910435	-0.724561970970093	0.0551641296887975	0.30190061188802
Merged-chr8-71285487-2	chr8	71284987	71285987	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	12773.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	5.56450623158012	5.92182482991559	6.11623931619681	5.98494795485155	6.06127186288185	5.80945465995617	0.149022422676237	0.649339478018188	0.902158965805849
Merged-chr15-27709998-2	chr15	27709498	27710498	+	632.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28456.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.31510580103473	3.25231047999729	3.41252294285515	3.14247087589882	2.88756088227078	3.15020860148633	-1.16373891689544	0.0792436390227501	0.37212142211415
Merged-chr17-34002326-2	chr17	34001827	34002827	+	968.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1980.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.3225079294908	2.17985611786454	2.35031086726343	2.55706002337782	2.42923848570156	2.61731943591632	1.6489095167836	0.0540999617898953	1
Merged-chr6-71438228-4	chr6	71437705	71438705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	2432.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.69633518489053	5.60893677654365	5.46610596977416	5.66940123286485	5.90429158359496	5.80645197286053	0.364565835595544	0.252621832875334	0.649949738121886
Merged-chr19-47937078-4	chr19	47936559	47937559	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-653.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	6.77744461597362	7.37529847152572	6.91104540754023	7.16773403710568	7.4613022525648	7.15914157616479	0.33034246050712	0.248762958778192	0.645819769301048
Merged-chr5-72559244-3	chr5	72558751	72559751	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133921, exon 2 of 23)	exon (NM_133921, exon 2 of 23)	394.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	6.94023968828415	6.96480775669278	6.93160912311882	7.13198739347064	7.00917564496377	7.50285929312117	0.418277023666582	0.110481540158553	0.444181452820932
Merged-chr19-24953839-1	chr19	24953339	24954339	+	623.0	f0_c57.idr	intron (NM_146097, intron 3 of 14)	intron (NM_146097, intron 3 of 14)	7777.0	NR_033744	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	3.10067876425071	3.13476949851704	3.24521394400254	3.49494436397033	4.15930551033626	3.86942913799522	2.79004673549448	3.07385068876534e-05	0.00105081745320783
Merged-chr8-13339159-4	chr8	13338706	13339706	+	834.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358991, intron 1 of 12)	CpG	402.0	NM_009361	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	6.23157966391068	6.14699549453077	5.9241562299085	6.73937226516227	5.69505550617911	6.01102809142163	0.202962207816434	0.596388963484743	0.879911021114935
Merged-chr11-95827687-4	chr11	95827188	95828188	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	3188.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	6.39194710232259	6.32312433955779	6.19490078783612	6.26173779425716	6.54091099660383	6.19063270817425	0.0674364751874489	0.814256119443142	0.956174647698565
Merged-chr17-46772738-4	chr17	46772204	46773204	+	964.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025966)	promoter-TSS (NM_025966)	69.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	5.8604427268899	6.1573428448457	6.33834587634026	6.13936720596654	6.17284937209762	6.0060321737075	-0.0196017388980382	0.948808418673735	0.988169196639905
Merged-chr10-80918076-5	chr10	80917448	80918448	+	806.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010722, intron 1 of 11)	CpG	297.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	4.039314161549	4.22000490766283	4.23962153544684	4.20823072326248	3.9419751796857	4.47183707643453	0.128433339102509	0.796384093395024	0.951430675491237
Merged-chr9-59291522-4	chr9	59291022	59292022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028121)	promoter-TSS (NM_028121)	-50.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	8.0166778478948	8.08910292694648	7.94777074795439	7.97265166353623	7.99609764318284	8.00387543783711	-0.0443237465600532	0.831387936229565	0.960444904168444
Merged-chr13-23575274-2	chr13	23574774	23575774	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-489.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	7.42746309975122	7.50053281375202	7.15421082398171	7.43421133054341	7.92664745842995	7.15940991380447	0.271021074762045	0.353365285546473	0.740681126527216
Merged-chr12-102380326-4	chr12	102379833	102380833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59480.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.45045391673608	5.69805663505309	5.75300080731358	5.92398244346087	5.79560537312786	5.62767852554477	0.289011549376071	0.371840835470278	0.755841610252976
Merged-chr9-55307756-1	chr9	55307256	55308256	+	703.333313	f0_balb.idr	Intergenic	B3|SINE|B2	-19157.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	5.8195296492221	6.38329427865776	6.32346353800341	5.60507108016851	5.57729158104315	5.55830745742206	-1.0909727664073	0.00107246531103152	0.0190231706673013
Merged-chr10-128058947-4	chr10	128058472	128059472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-10.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	8.82872353354431	9.09164493883852	8.48459334644165	8.48706450328478	8.75788013552574	8.64575982302422	-0.268695098666723	0.269565625163381	0.666706790078014
Merged-chr4-130820743-2	chr4	130820243	130821243	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28206.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.52052815993867	4.63988989378253	4.83241509730703	5.01393861154848	4.53974980752624	4.86127701757046	0.34879805442437	0.414763211282447	0.786019635735451
Merged-chr11-95421263-2	chr11	95420763	95421763	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	7180.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	4.4331964906814	4.42105841099194	4.19164032538533	4.35229012525103	4.70244452982932	4.6888331447184	0.584288558356131	0.196072218535551	0.58385918333415
Merged-chr11-82048254-4	chr11	82047743	82048743	+	869.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013654)	TTS (NM_013654)	2531.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	3.55820664906911	3.07219909946985	3.35010625228035	3.37231432682186	3.33865422782764	3.63337565192777	0.400321569955072	0.535054146832693	0.85338655146067
Merged-chr11-88996504-2	chr11	88996004	88997004	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2899.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.23908624620072	2.9977611405152	3.06288102164749	3.05692531093238	2.85868514704891	2.95300319378317	-0.688141675499057	0.314218598714417	0.708637665307082
Merged-chr19-8724023-3	chr19	8723470	8724470	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161413)	promoter-TSS (NM_001161413)	483.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	6.92143600893647	7.25339877368859	6.57099289369377	6.85889945473614	7.24860445409198	7.07808394671467	0.178892748888474	0.546273251011233	0.858597153066378
Merged-chr16-31029924-4	chr16	31029422	31030422	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	51510.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.95173626090309	5.80678172829184	5.9541900204297	5.67404753967521	5.44063882491329	5.61459088011415	-0.601234186441536	0.0556987784235142	0.303767710235549
Merged-chr10-63174619-3	chr10	63174106	63175106	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	29346.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	4.77887874668468	4.98938077522795	4.86943004806732	4.12086112051823	4.52748874472627	4.46054161501202	-1.19295401686614	0.00728082726892267	0.0804362405723499
Merged-chr11-116814706-3	chr11	116814197	116815197	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 2 of 4)	intron (NM_001347633, intron 2 of 4)	13349.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	5.52685770242753	5.08792731536587	5.09324051545587	3.85840823746076	3.4788895500248	3.89071778322277	-4.79654259896819	3.22338376043635e-13	6.70686109143967e-11
Merged-chr13-91681680-3	chr13	91681180	91682180	+	802.883362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-59841.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.57620559309171	4.59667894454516	4.34850606852852	4.42421936695937	4.62800652148641	4.32328772575306	-0.109027571217798	0.806139445943763	0.954102910475772
Merged-chr7-75910163-3	chr7	75909674	75910674	+	798.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61836.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	1.89624918274054	1.71098989404978	1.94331138034801	2.02721412328592	1.96530527914519	2.15340639367881	1.69241695998402	0.102746344517934	1
Merged-chr2-24927171-3	chr2	24926696	24927696	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178408, intron 2 of 7)	intron (NM_178408, intron 2 of 7)	-7587.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	3.68593376613461	3.9148975634552	4.11482171386341	3.63890308172582	3.29351930008532	3.91653989667522	-0.91307984889367	0.133496433450157	0.488698683323101
Merged-chr7-19832877-2	chr7	19832377	19833377	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10122.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	4.27537828405448	4.06229478958599	4.6005342169598	4.15108748950197	3.784844279725	4.31651318981439	-0.632267267294059	0.229576693638877	0.62518794057613
Merged-chr10-39450513-4	chr10	39450006	39451006	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L2a|LINE|L2	80707.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.18266612615892	7.54370501912188	7.16378102243378	7.0620760453538	7.38546676640026	7.14587642121094	-0.15463103421454	0.554909730019803	0.862989905297353
Merged-chr1-184031454-2	chr1	184030954	184031954	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2544.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	3.35593489527322	3.48182573920981	3.55858704083602	3.493264910793	3.20853023989035	3.5768156491176	-0.139555972012123	0.817874607368253	0.956835450074313
Merged-chr10-22344287-2	chr10	22343787	22344787	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-17607.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	2.5982955007055	2.49107078327498	2.64951089097008	2.25626273102769	2.47247624316532	2.72219917719143	-0.496327333227504	0.561854099899559	1
Merged-chr3-108044913-4	chr3	108044399	108045399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026764)	promoter-TSS (NM_026764)	-40.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	6.86921458271915	6.77215747654959	6.46388786706168	6.78019937327788	6.74705100476452	6.96917988857613	0.165769436809419	0.538451668662288	0.855202203269959
Merged-chr19-40305604-3	chr19	40305108	40306108	+	980.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 20 of 22)	MIR3|SINE|MIR	-33992.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	3.18841167809802	3.12211880055806	3.14340252349258	2.68631166929705	2.58658675277649	2.79437336616559	-2.63172255720965	0.000965735789780982	0.0175336992354562
Merged-chr4-116177141-4	chr4	116176676	116177676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3804.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	6.70821248423368	6.70600745917713	6.99468203369179	6.67097971643196	6.93473966106717	6.8914997556552	0.0580194538737325	0.825830712950606	0.958953374592769
Merged-chr9-83540414-6	chr9	83539912	83540912	+	869.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7926.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.25137315223986	4.43099798784057	4.59650549481069	4.07758544803453	3.98683079642895	4.47037830373523	-0.657875345923309	0.177830093493737	0.55892688546374
Merged-chr9-109054880-4	chr9	109054372	109055372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	6.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	7.74897719779714	7.8610735901468	7.6707237461788	7.9578618395899	8.26156730476759	8.04514943756635	0.473758661275505	0.0354490219891067	0.231115107037712
Merged-chr1-82927330-4	chr1	82926839	82927839	+	843.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	87879.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	3.1335255052702	3.0255690452626	3.06627057426629	3.17500055045604	3.31423709971592	3.36489280884487	0.903975976542553	0.15764747062209	0.52908202861787
Merged-chr2-167361817-4	chr2	167361311	167362311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12633.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.87761382802064	3.80904031016733	3.87200805143953	4.18068098857536	4.26839342098654	4.04415338735253	0.959477397010207	0.0517576469978079	0.290368611357381
Merged-chr10-80933833-4	chr10	80933329	80934329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3738.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	6.30400284582606	6.00395092907339	6.19822522678399	6.11902543478675	6.30189558644317	6.4479678230659	0.198711033976504	0.497613750047951	0.833761803306215
Merged-chr14-27381595-4	chr14	27381083	27382083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	URR1A|DNA|hAT-Charlie	20194.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.4709865765124	7.470333667944	6.92744260961579	7.21799986675023	7.5332201257969	6.74142609577317	-0.155046034287551	0.623173516168464	0.891297625063953
Merged-chr17-47010548-4	chr17	47010065	47011065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-33.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	7.82860016806352	7.99263811105127	7.71046204444654	7.71173564435489	7.87570107050644	7.97812850597585	0.00518685160095058	0.981837788146883	0.99582830941535
Merged-chr2-126876269-4	chr2	126875753	126876753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021450)	promoter-TSS (NM_021450)	8.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	8.40755065581368	8.81662665400095	8.12002666151865	8.26810096782277	8.56824060291929	8.47672806169386	-0.0597280330719524	0.818642507770029	0.957003649814951
Merged-chr17-50530354-4	chr17	50529839	50530839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	20792.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.46023288690578	6.070967899012	6.35035150953242	6.46198978808342	6.22477617306824	6.02654547496515	-0.0769546152229517	0.800874719841607	0.95270876613224
Merged-chr2-152106437-2	chr2	152105937	152106937	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029688, intron 1 of 1)	intron (NM_029688, intron 1 of 1)	913.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	5.631157015828	5.82324812889836	5.60511428536931	5.79189095616939	5.71083899426353	5.49079632008618	-0.0320525296163404	0.921034468050173	0.982480847360633
Merged-chr7-92698862-4	chr7	92698364	92699364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28952.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	4.00265356324109	3.99159920821266	4.02439755413514	3.96132888055079	3.89732572509205	4.18367740649513	0.0154857439021899	0.975035382442642	0.994418938322767
Merged-chr9-37421461-3	chr9	37420971	37421971	+	739.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164767, exon 16 of 28)	exon (NM_001164767, exon 16 of 28)	11704.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	3.69071323788636	3.99721521880722	3.66080877100023	3.29614173882048	3.51770864257121	3.73121639274311	-0.9457569390994	0.112686626192547	0.448410747254519
Merged-chr7-63858687-4	chr7	63858178	63859178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58179.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.4370985272471	4.68549553151437	4.57348597767163	4.76646849046457	4.70842216361103	5.00417252654821	0.599389513291405	0.150280162516011	0.517246479850651
Merged-chr3-52017929-4	chr3	52017436	52018436	+	946.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	87070.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.2147418393504	4.50775368209115	4.11225194119601	4.3255364710996	4.13408336237918	4.36760312850635	-0.0678008959348591	0.886908990136582	0.973794308941933
Merged-chr6-54019421-3	chr6	54018988	54019988	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20444.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.70551933740923	3.61464418457798	3.53699865242826	4.12118281795134	4.13002508450659	4.1322460539134	1.59020261794909	0.0026606636882078	0.0384288325235887
Merged-chr15-98881470-4	chr15	98880963	98881963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026967)	promoter-TSS (NM_026967)	-49.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	5.94858545884638	5.80414554955099	5.70492850720758	5.88815244642067	5.93077065787869	5.65575618726559	0.0194067003827281	0.950456267681697	0.988433654388255
Merged-chr16-21686319-2	chr16	21685819	21686819	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	L1_Mur3|LINE|L1	8346.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.06813464836487	3.94617588835517	3.99745612179827	4.04904629576788	3.93543113080054	4.24839027690354	0.203882195273394	0.679831161228662	0.914056754309378
Merged-chr10-98946283-4	chr10	98945794	98946794	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	31142.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.71364658458393	4.51865244921406	4.49975076200953	4.55581104873884	4.45286252832607	4.34269793093438	-0.316445579124909	0.462822283254808	0.815451584827553
Merged-chr15-79347825-1	chr15	79347325	79348325	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-236.0	NM_001304831	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	7.76155893622962	7.45078040904606	6.62501286298719	7.49476901618143	7.16949543122843	6.86099522986103	-0.247414557753208	0.487487170944691	0.828458303762018
Merged-chr8-120510188-4	chr8	120509659	120510659	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	21293.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.91719652420559	4.75244511092875	4.93744159880892	5.05711107524154	4.74967201227786	4.69504216469835	-0.0481027159494622	0.904434785397225	0.978131323042371
Merged-chr2-27701964-2	chr2	27701464	27702464	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-7328.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.27729119196061	5.37601900168283	6.01160036651518	5.35626865802465	5.54018103429059	5.79079462545338	-0.0298504385037482	0.938891333243053	0.986550175078409
Merged-chr4-139287630-3	chr4	139287136	139288136	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 7 of 9)	intron (NM_001037761, intron 7 of 9)	23072.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.13601061235248	2.92934510143631	3.26085714543302	2.99450905281586	2.71662675095566	3.33150980571945	-0.341681507078615	0.645163020961316	0.90045202461189
Merged-chr5-134232275-4	chr5	134231782	134232782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2657.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	7.92191517855355	8.15159797452239	7.86493967839629	7.96043186108537	8.14101885105404	7.74004352365947	-0.0346028561061015	0.884039884069582	0.973466734537782
Merged-chr10-117874809-2	chr10	117874309	117875309	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28835.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.77805947572751	3.77978279044061	3.78483228936018	3.82886361696276	4.08588858617122	3.63614236739253	0.302164777748547	0.57841580811157	0.872437129840066
Merged-chr1-106170948-1	chr1	106170448	106171448	+	659.0	f1_balb.idr	promoter-TSS (NM_133821)	promoter-TSS (NM_133821)	576.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	4.63552094965571	4.85659890257722	4.75404248476855	5.27237091470148	5.2592866646574	5.18444465619541	1.05020048633567	0.00513898438465198	0.0623330339180936
Merged-chr11-121351810-2	chr11	121351310	121352310	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	PB1D10|SINE|Alu	2637.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	3.03329878703008	3.10224872673005	3.31036335799534	3.21748727735576	3.08672090889046	3.03727072626032	-0.13279346693618	0.839552791464762	0.962784121274377
Merged-chr5-142457861-2	chr5	142457361	142458361	+	583.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-6070.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	3.39182339021904	3.22700575426837	3.28248480424401	3.45608834705397	3.21021823060073	3.23728166977399	0.010237357355075	0.986830094668453	0.997111821702157
Merged-chr1-128723207-4	chr1	128722730	128723730	+	787.604187	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130931.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.76561057176108	6.92537891198725	6.76390108449632	6.25241969725043	6.55471249013195	6.56432251525047	-0.567235500228869	0.0348969194906881	0.229090899179996
Merged-chr15-67172869-4	chr15	67172372	67173372	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	4010.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	5.73130076881276	5.62078895804941	5.83070649628552	5.60670971761774	5.62428633891973	5.60875536164225	-0.203079859267741	0.517686939278305	0.844716414341769
Merged-chr1-181145164-2	chr1	181144664	181145664	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-960.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	4.95109467461478	5.21114635782152	4.92437429621006	5.0708303057844	5.30680419634136	4.99050769315792	0.20463181991849	0.59199381288249	0.877880937493524
Merged-chr11-49243910-4	chr11	49243388	49244388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-303.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	7.84460636203476	7.75823284136623	7.46399459366132	7.86907986566732	7.71033561731237	7.48888387287593	-0.00345954070196452	0.988792126883742	0.997426973334006
Merged-chr18-56567202-2	chr18	56566774	56567774	+	733.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001162989, intron 1 of 4)	B2_Mm2|SINE|B2	4705.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	3.53084226517531	3.44281573416009	3.81629733480864	3.78668621290606	3.52069660676547	3.83710773167326	0.403920753288174	0.482192770585947	0.825427202167635
Merged-chr6-26581002-2	chr6	26580502	26581502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	649576.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	3.17483324007693	3.35337066586596	3.44557171590817	3.35825782635792	3.47027797181388	3.40745230095621	0.349536648807398	0.562993362598672	0.865755360453189
Merged-chr7-143473675-4	chr7	143473179	143474179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008767)	promoter-TSS (NM_008767)	-76.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	3.85537425505047	4.00761775150986	4.26885814228523	4.18549531105165	4.15059051764674	4.15966044619711	0.345065055210115	0.482386277793706	0.825570196891311
Merged-chr17-56626927-4	chr17	56626409	56627409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028782)	promoter-TSS (NM_028782)	-6.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	6.6475384603318	6.65005230090903	6.47883958183013	6.50976629586484	6.02032975633786	5.85160012475961	-0.70721847815592	0.0247902039771142	0.186084194183827
Merged-chr6-97455311-2	chr6	97454811	97455811	+	652.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	3975.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.02952489651649	6.86069260565258	7.00730266009692	6.82509226502283	6.68700983144168	7.10301274017321	-0.143822029420729	0.583465526698664	0.874062789752135
Merged-chr6-143113967-2	chr6	143113467	143114467	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	ORR1C2|LTR|ERVL-MaLR	-13815.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	3.67510232541021	3.38104063593315	3.58876156736884	3.48303630053758	3.11780930291353	3.65875190606484	-0.442420111712043	0.486804445495272	0.827985697457807
Merged-chr10-21777350-4	chr10	21776845	21777845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	86500.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	4.37822167983427	3.92366556610967	4.09259626254355	4.17277390119771	3.93536885797354	3.73990624207336	-0.52757498009235	0.324674833356389	0.717563375758146
Merged-chr2-11391101-4	chr2	11390611	11391611	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	7389.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	4.36504556897969	4.75131000424687	4.65643388267522	4.53516118030498	4.74115559491132	4.38021427218229	-0.0707015498650074	0.874258462119824	0.970713879317672
Merged-chr6-123095470-8	chr6	123094966	123095966	+	902.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27224.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	5.47968194063018	5.70109234686048	5.73510164345239	5.31597740690615	4.94158677339588	5.6732995991073	-0.597845570868506	0.117500861954502	0.457641878705313
Merged-chr8-3672136-4	chr8	3671661	3672661	+	955.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357661, intron 1 of 1)	intron (NM_001357661, intron 1 of 1)	230.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	2.73466667417134	2.62895982217932	2.84095209291802	2.60217974785489	2.55010023170547	2.40411029206762	-1.2038605358419	0.136620670737102	1
Merged-chr1-38039022-2	chr1	38038522	38039522	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 12 of 23)	intron (NM_198303, intron 12 of 23)	41012.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	3.038726924015	2.95700944914048	3.13261159780083	2.92847829951754	2.7583263520287	3.0333465612806	-0.652265039040882	0.347751427603329	0.735734465356804
Merged-chr4-116720343-2	chr4	116719843	116720843	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-612.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	4.24553727808287	4.38151378355084	4.31573261677498	4.29055047032757	4.41358068599471	4.55060650858958	0.265243077228774	0.55146244688745	0.861230744829578
Merged-chr11-69684493-4	chr11	69683990	69684990	+	895.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034097, exon 10 of 13)	exon (NM_001034097, exon 10 of 13)	1064.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	7.33669048234654	7.63585525660101	7.10250031270536	7.36936554723256	7.45132168061855	6.6179665092937	-0.257041530644577	0.422450781223566	0.791229309198916
Merged-chr5-119058586-7	chr5	119058066	119059066	+	987.127014	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49670.0	NR_040693	73477.0	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA	5.85038292558374	6.21582521173127	5.81913746332878	5.81879587516602	5.80802552247394	6.19504005135848	-0.0702117750759054	0.830256327262089	0.960219727001139
Merged-chr6-22359199-4	chr6	22358697	22359697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-3116.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.63072223941704	6.62151992267639	6.69509228853363	6.70590442018517	7.03463508165373	6.47477223469859	0.199032233330916	0.480215636027142	0.824537487093219
Merged-chr7-19501874-4	chr7	19501366	19502366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6465.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	7.18959253257218	7.39762963645319	7.38474516023146	7.29817971279298	7.61777528357954	7.28601242446557	0.136620724433404	0.580161058137146	0.87276422265422
Merged-chr16-58507161-3	chr16	58506582	58507582	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	B3|SINE|B2	16344.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.14151970577044	6.8805341482116	6.69372211139891	7.44140081906371	7.97510647074747	7.43929296676357	1.07752899324451	0.000168830841026394	0.00436327709467692
Merged-chr2-71368453-4	chr2	71367943	71368943	+	894.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-889.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	6.47470223456886	6.64285231349949	6.45428843868103	6.43481087510209	6.85008578040332	6.76432493264765	0.266311487063766	0.337797423749507	0.72769978571614
Merged-chr12-103345241-4	chr12	103344761	103345761	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	10740.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	5.50736349612288	5.28886255870347	5.25165255859524	5.84564926815093	5.56602370553433	5.75378517779235	0.682935725338793	0.0430709711595659	0.260283925357336
Merged-chr11-87122090-4	chr11	87121585	87122585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4990.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	5.57816837262082	5.85068390983558	5.84390993783814	5.77233176947349	6.07307732440129	5.95269842049834	0.324700502830791	0.303596758746982	0.700122713774969
Merged-chr10-89686289-4	chr10	89685810	89686810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130956)	promoter-TSS (NR_130956)	-16.0	NM_001310704	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	6.82338960150566	7.11674994469238	6.79199457290625	6.85961646859722	6.80326738423819	6.32336607235851	-0.355235459177942	0.220897611436292	0.61561513090473
Merged-chr16-23346979-4	chr16	23346470	23347470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	MTEa|LTR|ERVL-MaLR	56500.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.12441618583524	4.84169432614378	4.9494906697778	4.93195148807044	5.08719263309161	5.01449982204218	0.0800851043171265	0.832629323406878	0.960680848371944
Merged-chr11-63130719-4	chr11	63130195	63131195	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	-762.0	NM_008885	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	5.68184611683078	5.57645096939835	6.27362523004162	6.1075680843341	6.16217297667275	6.21954168705969	0.512997786203865	0.130339809121874	0.482560431744706
Merged-chr4-128726553-2	chr4	128726053	128727053	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	MER58B|DNA|hAT-Charlie	-1018.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.12180539066623	4.1698034414616	4.24751091496596	4.08640291858396	4.29992242247027	4.27051650202489	0.130356494149699	0.779593181921239	0.945842395443163
Merged-chr11-34727103-2	chr11	34726603	34727603	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 6 of 51)	intron (NM_033374, intron 6 of 51)	56802.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	3.91121633330924	3.91391731483877	4.32596756770281	4.33223600627376	3.77983464235565	4.13345548601882	0.119632186959241	0.824235075756573	0.958523256704056
Merged-chr11-106122899-4	chr11	106122377	106123377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 5 of 15)	intron (NM_011947, intron 5 of 15)	37050.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	6.35807567985389	6.28035639620872	6.72218908094407	6.25164909031095	6.43166897061457	6.70672974780461	0.0200126572494548	0.946975373950152	0.988007649185823
Merged-chr8-79031155-2	chr8	79030655	79031655	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	LFSINE_Vert|SINE|tRNA	2718.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.9691184637536	3.82624770987419	3.66399172874151	3.18977670491353	3.03603671893073	3.40218417471951	-2.54863841760496	0.000121560612055582	0.00334374063071765
Merged-chr9-97105587-4	chr9	97105089	97106089	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	5452.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	5.67892965917896	5.88420717143752	6.21450876173711	5.85416445334553	5.92808621196655	6.41680602841786	0.253069266067172	0.463489673472065	0.815953639061961
Merged-chr15-89315346-4	chr15	89314859	89315859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170561)	promoter-TSS (NM_001170561)	-48.0	NM_001170561	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	5.97407891286491	5.53538015369458	5.90481561594824	5.8909834757348	5.51792591321749	5.54838520823839	-0.274737539746055	0.424755266034059	0.792833924352381
Merged-chr12-83582239-3	chr12	83581739	83582739	+	720.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359167, intron 3 of 12)	intron (NM_001359167, intron 3 of 12)	14983.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	3.36602342113822	2.92536963151066	3.14641574605152	3.13705691933275	3.10986815402088	3.10005887861813	-0.191613521832031	0.77669184755747	0.944890351789015
Merged-chr11-79495277-2	chr11	79494777	79495777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	intron (NM_010897, intron 36 of 57)	8805.0	NM_019409	18377.0	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	5.68167803047093	6.0119717637165	5.63595636320301	5.75696498565382	5.7847524142363	5.55342129598291	-0.156976753957885	0.632448351622769	0.895540879841635
Merged-chr7-45340417-2	chr7	45339917	45340917	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 28 of 29)	ZP3AR|Satellite|Satellite	5148.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	4.78412178711926	4.74485415392232	4.49262488520865	4.75659418231055	4.44120202878424	4.60384576039026	-0.204843212474004	0.630658977024325	0.89479314930704
Merged-chr10-68275548-4	chr10	68275072	68276072	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3154.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	8.2202846897575	8.34803919916026	7.77032198142652	8.23746463526494	8.71463988257339	7.93125469837812	0.283391237306623	0.333657418544973	0.724517434137507
Merged-chr9-100506866-4	chr9	100506354	100507354	+	923.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	2.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	7.1096187639611	7.27812041809837	7.12554341330038	7.32260915787472	7.4404130083998	6.97989126858796	0.145334997435172	0.569807439494667	0.868897023832802
Merged-chr11-8579519-4	chr11	8579022	8580022	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	85013.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.81494862410795	8.27423451384484	7.59534684942229	7.4522189503439	7.58185623614049	7.4460395618706	-0.631546032926363	0.0180858942713873	0.151351814395413
Merged-chr3-126667459-3	chr3	126666969	126667969	+	622.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	70518.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.13124650815904	3.24561826401769	3.15872386920996	3.16312469402188	3.21959104549051	3.39784005648582	0.32515534103471	0.605644370921857	0.883581756351046
Merged-chr4-132563499-4	chr4	132563019	132564019	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	-548.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	6.35203195481565	5.9095287881327	6.05376540328823	5.70742332401298	5.59187388553117	5.27966878774307	-1.02130863099118	0.00277148105931053	0.0396304169072196
Merged-chr18-54848913-4	chr18	54848418	54849418	+	933.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141262.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.90614051921696	6.147736409579	6.17658228514848	6.01755280453557	6.02298009103631	6.25638223786341	0.0300905593023532	0.91930630936685	0.982011519166154
Merged-chr10-20395992-1	chr10	20395492	20396492	+	581.0	f0_balb.idr	Intergenic	Intergenic	48173.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	2.50081530174647	2.49264658102141	2.67107079296852	2.34465537674285	2.52254036303071	2.43400154765521	-0.700611674274652	0.389374213344963	1
Merged-chr4-147848481-4	chr4	147848025	147849025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-107.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	6.10867607249321	6.69467300018668	6.10627965101526	6.49190673983185	6.64417227071254	6.16774001115821	0.184073099161923	0.578475333728138	0.872437129840066
Merged-chr15-6601513-4	chr15	6600993	6601993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	21646.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.28929365843985	7.29170682114462	6.89280956654209	7.07992234515689	7.10655707188361	7.13010638956838	-0.115502680710226	0.647439913553369	0.901415238721451
Merged-chr10-96333457-4	chr10	96332981	96333981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	107274.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	8.30592505926855	8.47814260446055	8.05355588221649	8.22032017306067	8.44064963134759	8.00316515116902	-0.0782377965547068	0.74805575499652	0.936880860325556
Merged-chr5-67313849-1	chr5	67313349	67314349	+	541.0	f1_c57bl6.idr	intron (NM_178651, intron 1 of 17)	intron (NM_178651, intron 1 of 17)	6894.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	2.75248249227831	2.61126511224866	2.6933653023524	2.79672234049022	2.93608373441518	3.06669101451597	1.28239808832807	0.0817025597299797	0.378166912722487
Merged-chr3-79525228-4	chr3	79524739	79525739	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	42440.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.66037661703151	5.22351904872719	5.15229679165697	5.31581957732135	5.12266022894472	4.87417279650158	-0.502730956621949	0.202040399163285	0.591773948258361
Merged-chr5-103722746-4	chr5	103722246	103723246	+	699.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-31416.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.2332737133643	4.64243546625995	4.84403342990187	5.47656310616048	5.24881329459519	5.44847442971091	0.931916106533037	0.0204932598752948	0.164009153381123
Merged-chr17-74807509-3	chr17	74807034	74808034	+	951.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	89784.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.11540211974359	3.17715006411451	3.14227620568814	3.79852699397965	3.87987469555949	3.58123242807581	2.46063291143303	0.000122569248921572	0.00336802636744021
Merged-chr15-102243122-2	chr15	102242622	102243622	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	3378.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	3.19350990686036	3.2287576817623	3.16512189203458	3.49267565986602	3.38465640359313	3.35613621618046	0.865950296825004	0.156911358522626	0.527761038035113
Merged-chr9-21446407-4	chr9	21445889	21446889	+	924.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	21481.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	4.30700085712046	4.50453777984577	4.44589161028298	4.33107053820713	4.40604221328995	4.59260492063295	0.0513175389274306	0.907223445328546	0.978868492078838
Merged-chr16-4879838-4	chr16	4879340	4880340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	11.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	8.39784456466844	8.67190056449941	8.42759815446336	8.41148077814707	8.75565391401669	8.4661452010524	0.0699779751307559	0.757050953053838	0.939819795914786
Merged-chr18-61092095-2	chr18	61091595	61092595	+	799.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13477.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	4.47752192985222	4.32900896140781	4.69912238067593	4.64784206266618	4.67121119719842	4.64915192045678	0.383926370058857	0.36606549134617	0.751105402903166
Merged-chr14-63438815-2	chr14	63438315	63439315	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	2421.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	7.74297463861595	7.81224602530276	7.52879460092667	7.72308322698917	8.00040255604162	7.56528931208554	0.113494880398051	0.643239526137367	0.899691956477358
Merged-chr15-81860990-4	chr15	81860480	81861480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	6.72930804645421	6.96765572387948	7.08706365048644	6.89911615842601	6.95464295643774	7.35754759807567	0.225094820339567	0.412661288148777	0.784551818322662
Merged-chr13-37801915-2	chr13	37801396	37802396	+	544.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24142.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.88119101507988	3.73276918469644	4.16762158927455	3.89318449595989	4.11435992073956	4.31786857909731	0.544911801333049	0.299295431172415	0.696061035133241
Merged-chr10-121505452-4	chr10	121504950	121505950	+	935.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29200.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.21864078051963	5.15137859898763	5.0896862266056	5.37757190597675	5.22759449827798	5.34998017001417	0.319469936972567	0.359932520808429	0.746219593510366
Merged-chr9-41129446-4	chr9	41128938	41129938	+	663.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	RSINE1|SINE|B4	28624.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.252139867617	3.11808404838822	2.95291550835966	3.04185310160718	3.18579487657583	3.14815450684927	0.0384430952204334	0.953995238871414	0.989495550016789
Merged-chr13-94297180-1	chr13	94296680	94297680	+	544.0	f1_balb.idr	Intergenic	Intergenic	-11349.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	4.95965963343631	4.70656726011667	4.46340147850306	4.7124134845199	4.94331068784198	4.62276557930133	0.0911440357862945	0.83318218394896	0.960974486074802
Merged-chr13-37658743-4	chr13	37658261	37659261	+	726.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167277.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.48816830282888	5.16390493140142	5.22052140842847	5.5884793777419	5.37034268457066	5.63988073863764	0.440716882821328	0.210142262523921	0.602122517983304
Merged-chr5-113644697-4	chr5	113644229	113645229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-1126.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	8.17938126652468	8.33664169447597	8.07759006891516	8.3200082514092	8.47593337508733	7.8829920329015	0.0749613998882238	0.763589669450011	0.941793063578371
Merged-chr11-93733778-2	chr11	93733278	93734278	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151988.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	3.24062984471994	2.67960935774206	3.00282505745984	2.95577448850995	2.70593777438415	3.13363859875934	-0.251035665314046	0.74495173632767	0.936032341688524
Merged-chr8-124912625-1	chr8	124912125	124913125	+	581.5	f0_balb.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14739.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	4.66004732299652	4.62349894798663	4.22916383138353	4.0632166511169	3.44305950812481	4.00021619390007	-1.90624867166379	0.000964398563154275	0.0175170651916483
Merged-chr8-119782905-4	chr8	119782398	119783398	+	865.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4482.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	2.72239545676728	2.61610143497138	2.71502690666697	2.58871903762908	2.42052024292097	2.60139635723697	-0.870897431818291	0.263172562060169	1
Merged-chr15-100666424-3	chr15	100665906	100666906	+	893.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	3094.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.23182080174834	5.49902191990692	5.41062350798599	5.38062282679726	5.38340398155458	5.22086068633791	-0.096188444206702	0.780760129666713	0.946078518476608
Merged-chr2-84476440-2	chr2	84475940	84476940	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	319.0	NM_001177319	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.33655385169048	4.15126956673674	4.13322851473247	4.4632060783433	4.03382208120843	4.29572923611505	0.156598706059114	0.745878100990655	0.936251303305737
Merged-chr7-134689276-4	chr7	134688771	134689771	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18584.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	4.02385947790054	3.68522649355518	3.92332021802358	3.91188539309705	3.94433076272208	4.13215606539342	0.336658721440677	0.516563898433617	0.844296391152365
Merged-chr10-14086367-4	chr10	14085856	14086856	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119977.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.74648648497475	5.61332772328475	5.45128080601395	6.20948138427733	6.25005959515752	5.10958884898333	0.622635026143643	0.145861405097815	0.509287725877176
Merged-chr5-138171200-4	chr5	138170698	138171698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	68.0	NM_001356577	17220.0	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	5.90109445025999	6.27330153612551	6.62422868298449	6.52473052206346	6.43226868663093	6.63618843467861	0.392331010237278	0.213787587110332	0.606900020244801
Merged-chr5-65984257-4	chr5	65983758	65984758	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17134.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.81017995940127	4.56625174319963	4.51159197638219	4.78164539353297	4.38629819473607	4.53607131492512	-0.158192313780921	0.718045637864477	0.927249469209724
Merged-chr16-11468033-2	chr16	11467533	11468533	+	642.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	62385.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.41946992455341	3.44880662253586	3.80858351402708	3.73482937174661	3.40117035861073	3.68189542904567	0.164891293231223	0.78135503330616	0.946174647340264
Merged-chr18-67245635-7	chr18	67245120	67246120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357518, exon 1 of 11)	5' UTR (NM_001357518, exon 1 of 11)	210.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	7.9698774156234	8.32661088713769	8.05945641076432	8.15380193381082	8.46054228450866	8.21757720228167	0.222377083475121	0.340947727825958	0.730599337545402
Merged-chr15-84351462-4	chr15	84350940	84351940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25321.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	4.36580336294954	4.32216540525623	4.3760345036266	4.52160047428506	4.62791867284994	4.52961724123679	0.533703497766524	0.211301639384447	0.603818490620959
Merged-chr13-55016694-4	chr13	55016191	55017191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4128.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	5.85944282720425	6.24561893557289	5.96375368831746	6.55780147872245	6.65127262034308	6.66828142063063	0.963022663408907	0.000867966254326357	0.0161425427112176
Merged-chr7-55871288-2	chr7	55870788	55871788	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	29217.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	3.49563276565302	3.04055668323599	3.47467378257645	3.46304566397201	3.19937068111192	3.74436120201221	0.485624626546649	0.468770288681588	0.818701612865445
Merged-chr16-4740212-3	chr16	4739688	4740688	+	808.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	B3A|SINE|B2	-1425.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.78151225621772	5.05307203152466	5.09939660321242	4.78315976833049	4.89561176324754	5.13078793506138	-0.0958230582448066	0.807560664918893	0.954557080558103
Merged-chr1-170446875-2	chr1	170446375	170447375	+	854.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	110235.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.60556239041165	3.5912452268067	3.80120826180913	3.55629680476628	3.55578978614517	3.72313691346781	-0.189368761083336	0.732409386697884	0.931768523023585
Merged-chr9-66593579-3	chr9	66593095	66594095	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-480.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	7.10839104564222	7.24502792670965	7.49936316231646	7.27024293907014	7.35921194693515	7.43783388266118	0.102163233656954	0.676779314006595	0.912549881054299
Merged-chr1-152686094-4	chr1	152685615	152686615	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60898.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.21007045690201	5.98728174389592	5.81340056522344	5.65073690665797	5.65227301694348	5.99412818721876	-0.460476950955672	0.154013624475559	0.523165395577891
Merged-chr2-136892122-4	chr2	136891624	136892624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-44.0	NM_028834	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	7.82888606424313	8.15927594153356	7.59001071386429	7.90907767107438	8.16895269303483	7.64666937893491	0.0644835270059225	0.811784783476689	0.955319632415911
Merged-chr9-13302004-2	chr9	13301504	13302504	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55048.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	3.12754383350361	3.10760677333433	3.21469131945772	3.20226391774472	3.19438533667177	3.44799170166253	0.554518608088045	0.380102200350937	0.762308048682461
Merged-chr4-132593092-4	chr4	132592610	132593610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29043.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.32102214162645	7.37756690172077	6.88939208866408	7.06348077033167	7.16303021584878	6.68643475189918	-0.339530857423241	0.230772149097904	0.626487340955296
Merged-chr2-167934256-2	chr2	167933756	167934756	+	857.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	1929.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.71357204054337	6.0812045620965	6.08879271576492	6.23900895775681	6.32821114707445	6.01399742878465	0.410425443433658	0.184149333998789	0.567763528958023
Merged-chr5-66083527-4	chr5	66083042	66084042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	14637.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.79768443116479	5.27939803506001	5.57459547876814	6.09537529547716	6.29403604173164	6.06822579236022	1.0502850853584	0.00152840177312944	0.0250482192151007
Merged-chr9-18292168-4	chr9	18291657	18292657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025844)	promoter-TSS (NM_025844)	-110.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	7.09135965444731	7.37686778338437	6.7439848152463	6.89105450174808	7.21287402440798	6.85105003515293	-0.157322168573252	0.587610589751945	0.876017619062143
Merged-chr16-55836513-2	chr16	55836013	55837013	+	601.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	intron (NM_001159395, intron 1 of 12)	2128.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.14927283232444	3.16500553249829	3.25138462469689	3.41272265395808	3.4496419372778	3.59331853201179	1.1927856103767	0.0505584357432371	0.286338350602075
Merged-chr7-84150846-4	chr7	84150365	84151365	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	1028.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.35719653137443	3.45067494252985	3.25179028863103	3.8310197665622	3.78319728635847	3.83008009027697	1.61785175854561	0.00593223225578134	0.0692297990308959
Merged-chr2-132145263-6	chr2	132144835	132145835	+	793.049988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355430)	promoter-TSS (NM_001355430)	-15.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.05077911727595	3.84417551651932	3.9556420405568	3.995795376384	3.92983585719125	3.70921218410358	-0.19121083830184	0.712599252889067	0.925224832793332
Merged-chr3-59342230-4	chr3	59341744	59342744	+	843.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	L1MA4A|LINE|L1	2012.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	5.17105036271587	5.19716631403233	5.35603948893897	4.80358175500195	4.58893982033905	4.86513869477508	-1.07190312854392	0.005105656246612	0.0620554257914244
Merged-chr8-126944961-3	chr8	126944528	126945528	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	893.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	6.41511316287618	6.2372781578748	6.21591546361169	6.07371404812258	6.20234968595141	6.19276108579938	-0.231483908205969	0.409641279643179	0.782996589845341
Merged-chr4-141477814-4	chr4	141477302	141478302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33129.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	5.80975972359786	5.85818620111861	5.99807600719476	6.52611588958714	6.10686932516052	6.14817992125076	0.667355982775996	0.0292505808980556	0.205512314056017
Merged-chr11-29515035-4	chr11	29514502	29515502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026465)	promoter-TSS (NM_026465)	31.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	6.98536664662602	7.20792673547429	6.91211712694055	7.07571100753577	7.22881240959129	6.75290267710889	-0.0016900268261856	0.994991735024913	0.998961028701257
Merged-chr8-90877120-4	chr8	90876643	90877643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	48308.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	8.13229909254185	8.22037112103225	8.23868304778659	7.85259383518603	7.94879149147796	7.72013509598246	-0.492387045058999	0.0217142470843354	0.170549279912533
Merged-chr2-32547831-1	chr2	32547331	32548331	+	921.0	f0_balb.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12472.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.45432839173852	5.55576198376305	5.27182843576588	5.21273140863872	5.06953831546534	5.02143226958576	-0.673772173296385	0.0571867341510789	0.308454786810449
Merged-chr1-134493613-2	chr1	134493113	134494113	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1047.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	3.9009423688062	3.73514920095125	3.78680943814155	3.60138321705026	3.88612188085271	4.00158343996608	0.0873322797305412	0.871211113065184	0.970222087171093
Merged-chr14-10134052-4	chr14	10133534	10134534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	249939.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.10720976621426	4.00458906722162	4.0857713620896	3.85946463277392	3.67582591600595	4.06182979669059	-0.617718795047024	0.230191626407084	0.626042975979104
Merged-chr11-106994464-4	chr11	106993941	106994941	+	970.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010655, intron 3 of 10)	Lx8|LINE|L1	5084.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	4.27481852017393	4.24405220755898	4.18602661701959	4.76258383866651	5.01373263686958	4.69459857825266	1.54175478401494	0.000426916452553315	0.00927005850314621
Merged-chr9-21724321-4	chr9	21723766	21724766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	690.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	7.37423907130222	7.40122977573145	7.07098755116573	7.45001086078384	7.68829754809143	7.32924721028001	0.304710162870408	0.226465553397547	0.621413592108663
Merged-chr14-50833244-1	chr14	50832744	50833744	+	544.0	f1_c57bl6.idr	intron (NM_009351, intron 43 of 54)	MIRb|SINE|MIR	25328.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.55947735256643	4.42929896335655	4.73933581643037	4.3210824035214	4.47349858326475	4.97233632399512	0.0783753290059042	0.865811240769314	0.968641478520565
Merged-chr3-104638568-4	chr3	104638035	104639035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-129.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	7.3559172290135	7.39903979429417	6.61343154047702	6.04643221681745	5.80675651982758	5.67112509007791	-2.13433029423368	1.60773360569101e-10	2.05809689018981e-08
Merged-chr4-83485906-4	chr4	83485459	83486459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355203, intron 1 of 10)	CpG-10005	504.0	NM_001290527	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	5.87000344352798	5.90928123378335	5.47028736470539	5.80032274892582	4.71957086165434	5.37785770338739	-0.725389026787153	0.100458379099467	0.422702442887913
Merged-chr2-76610878-4	chr2	76610378	76611378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37116.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	4.81984249189757	4.84595921976308	4.92148412583035	4.56174836984365	4.67788615293467	5.11646832792037	-0.147811074531857	0.723028213764358	0.928989158354973
Merged-chr4-74311306-3	chr4	74310800	74311800	+	801.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	59421.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	5.14262572337485	5.71881462652752	5.31421675503516	5.53207159852665	5.38534629080771	5.31366486932564	-0.0163060486049394	0.965012035232932	0.991733831826468
Merged-chr2-32534520-4	chr2	32534042	32535042	+	908.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-817.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.89943997295775	6.23843062793728	5.86401353934916	6.03422862618285	6.04094708428476	5.87509871899084	-0.0523046691728335	0.865568037480441	0.968641478520565
Merged-chr6-39241780-4	chr6	39241251	39242251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34978.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.99636506846736	7.20789300054741	6.56665887350137	6.96146359479375	7.36774839827991	6.76726073142281	0.162342270176993	0.600837281308683	0.881855262262798
Merged-chr3-101010810-4	chr3	101010310	101011310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 6 of 8)	intron (NM_001167906, intron 6 of 8)	18685.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	4.27220147737697	4.54866651281215	4.59619715299964	4.4854766938518	4.51020785434066	4.80968995387793	0.309566186296379	0.483242438938783	0.826100933952794
Merged-chr9-111429192-1	chr9	111428692	111429692	+	563.0	f0_balb.idr	Intergenic	Intergenic	-9889.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	2.93830665392836	2.91463582456543	3.0581861112621	2.70930788233938	2.6561737067063	3.01689827113985	-0.869891833016774	0.235946856397846	0.632271618535699
Merged-chr7-97033514-1	chr7	97033014	97034014	+	816.0	f1_c57bl6.idr	intron (NM_153591, intron 9 of 13)	ID_B1|SINE|B4	-48237.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.37602600391387	3.86501281147689	3.57701273115621	3.8774756373521	3.42146128379158	3.53673579327629	0.00316359554286777	0.995906885870152	0.998961028701257
Merged-chr10-21601100-4	chr10	21600607	21601607	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	7962.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	3.15974312302453	2.87892334544373	3.11745695153516	3.17248804927701	3.00866099906816	2.81622565297061	-0.20906678669444	0.768326437380483	0.942864224975033
Merged-chr11-119085627-6	chr11	119085152	119086152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 2 of 4)	C-rich|Low_complexity|Low_complexity	585.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	8.06372902477508	7.90487806527279	7.69953503657038	7.7231178696279	7.58990632104188	7.91427750128685	-0.229443677004862	0.334617628666945	0.725082622186825
Merged-chr11-119269869-2	chr11	119269369	119270369	+	832.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	1906.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	4.41116234950646	4.3421261954072	4.90756922548776	4.44884815038925	4.03406641728688	4.42486747890404	-0.658285673962689	0.181490596801034	0.563787133106409
Merged-chr7-41393399-4	chr7	41392920	41393920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183167)	promoter-TSS (NM_183167)	-41.0	NM_001199330	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	6.34015184865184	6.57943954967837	6.43847067822216	6.4671925275596	6.39247378538874	6.63438334002554	0.0581243038500725	0.831286865704167	0.960444904168444
Merged-chr2-29738486-2	chr2	29737986	29738986	+	835.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-23042.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	4.75725506833915	4.70771551538499	5.07573662118313	4.55598629944825	4.45965234017163	4.68970441840402	-0.665570781291311	0.112566637146213	0.448241038651517
Merged-chr16-33885102-4	chr16	33884588	33885588	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 5 of 15)	exon (NM_010580, exon 5 of 15)	55423.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.9855032235258	6.39492073776351	6.24911519430866	6.23028425381387	6.07595231203829	6.30903076186086	-0.0335608925781989	0.910482677187565	0.979856358918468
Merged-chr5-129715505-4	chr5	129715003	129716003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356954)	promoter-TSS (NM_001356954)	6.0	NM_001356959	66258.0	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	5.98968524533919	6.08964969035198	5.93471332006987	6.17333082202774	6.31276243610114	5.73170285409328	0.174228669348533	0.584537857684546	0.874568023559098
Merged-chr4-145244283-2	chr4	145243783	145244783	+	901.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	2587.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.27172394666716	5.48439366300116	5.87805027363673	5.82392597312826	6.04443068824447	6.38850828070659	0.969889327944891	0.00678419994911863	0.0763973080750119
Merged-chr16-12491098-2	chr16	12490598	12491598	+	780.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-320292.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.2229635840265	3.19980639201264	3.28283580687598	3.38470343918594	3.36307288624059	3.35442076111858	0.542862385683815	0.368650644016476	0.753585131736222
Merged-chr8-14846282-3	chr8	14845763	14846763	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 15 of 15)	intron (NM_172910, intron 15 of 15)	-42273.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.04915846637998	2.97307960022335	3.49863563852397	3.34783537140317	3.70021967150518	3.23559227828008	1.02079965339596	0.142799683649628	0.504418240665572
Merged-chr6-124672447-6	chr6	124671993	124672993	+	734.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	9389.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	3.23961105349527	3.50552718829864	3.4275627697646	3.35157589212721	3.35790835316359	3.60270029897366	0.153543485241488	0.799621929849797	0.952263864378888
Merged-chr5-43916142-4	chr5	43915657	43916657	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47348.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.50557336357986	3.2803634087928	3.46100229047741	3.29737889359462	3.51394969629364	3.68545948304289	0.321732457305555	0.593653342250432	0.878589727861081
Merged-chr18-36364344-2	chr18	36363844	36364844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	15720.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	5.22761983580811	5.11802879661915	5.54002364176318	5.15565979934252	5.07341302006435	5.05888552279525	-0.406042686307558	0.270775757551446	0.667817293838275
Merged-chr5-142401443-4	chr5	142400946	142401946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199068)	promoter-TSS (NM_199068)	-51.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	6.82941041767622	6.44187412847112	6.69141887614149	7.16456736675854	6.67646608592975	6.30251443056774	0.168500122350803	0.606499472004394	0.884136163326996
Merged-chr2-34645858-2	chr2	34645358	34646358	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	109374.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	2.89240501783892	2.83824798890319	2.83297907525661	2.65458012104413	2.49640424837964	2.78426347042551	-1.1698584843894	0.125576663239114	0.474177845108014
Merged-chr2-30985433-4	chr2	30984939	30985939	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028846, intron 1 of 24)	intron (NM_028846, intron 1 of 24)	3160.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	2.66300432584202	2.8438223379703	2.59839215824531	2.65833755110731	2.54922825045722	2.8562106294438	-0.114750565977473	0.881780265378713	1
Merged-chr7-28593592-4	chr7	28593066	28594066	+	926.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	4618.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	3.19382415826535	2.96536323256819	3.41716170930095	3.14587959921218	3.02106998434301	3.10912250516218	-0.468562951372688	0.486388597252472	0.827839600723771
Merged-chr11-60537612-4	chr11	60537122	60538122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-61.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	8.62246230685948	8.50670901118479	8.36336122276656	8.30502307966403	8.45414774140192	8.14823573218227	-0.2660442240891	0.22379145319591	0.618522528317454
Merged-chr19-5414969-4	chr19	5414470	5415470	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	8155.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	5.1824872955217	5.30758368392644	5.37976261180221	5.27729731826959	5.18041195272787	5.77798405078664	0.267526460447523	0.476465977568226	0.82257619929543
Merged-chr7-80370193-4	chr7	80369637	80370637	+	911.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 2 of 23)	RSINE1|SINE|B4	1238.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	6.30913717467018	6.50834285435183	6.41435030172758	6.81791741423365	6.63167311523282	6.08855122075305	0.235314499554103	0.449825025567057	0.808013574003465
Merged-chr5-110808222-4	chr5	110807737	110808737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347394, intron 3 of 27)	intron (NM_001347394, intron 3 of 27)	1844.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	8.22639233298639	8.48260095499889	8.31407011510198	8.17288291141549	8.50655720783969	8.29012864965863	-0.0170988269466157	0.939114701666979	0.986604659958455
Merged-chr4-130798535-1	chr4	130798035	130799035	+	813.0	f0_balb.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5998.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.47578414491115	7.28754592087223	7.70458134995582	7.806169350938	7.75873335530434	7.50859684893116	0.303454860510616	0.217689646329696	0.611656200779633
Merged-chr4-94515507-2	chr4	94515007	94516007	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026368, intron 5 of 5)	intron (NM_026368, intron 5 of 5)	41289.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	3.00844856481972	2.86339200478386	2.97075179613727	3.30636413440008	3.33248504363238	3.394157846474	1.77453806552463	0.00797924474328118	0.08593470495943
Merged-chr9-45405354-4	chr9	45404859	45405859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-718.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	7.39528570583973	7.24784979277655	7.35270163827891	7.0838830444267	7.39173535277462	6.96083466580949	-0.241515701705864	0.341848084187249	0.731051823204211
Merged-chr12-32343684-3	chr12	32343195	32344195	+	921.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-35094.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	3.4104723266984	3.52173911844445	3.63050463163452	3.7831954546586	3.82932409603261	3.47840596129409	0.676790358484703	0.238456447363116	0.635206594950809
Merged-chr9-69987771-4	chr9	69987268	69988268	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1698.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	3.513741377053	3.11752740308478	3.63906425970256	3.42975841691073	3.17298451144135	3.28216526063852	-0.539312683310997	0.407507297100766	0.781633737084177
Merged-chr9-21155010-4	chr9	21154501	21155501	+	824.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5095.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.24519860875867	3.36312473163942	3.18414399116687	3.1444144313196	3.19742825654667	3.36841863557447	-0.143148237133533	0.819576654916252	0.957283576025177
Merged-chr11-58301221-4	chr11	58300682	58301682	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5887.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	5.20251222921781	5.7701188283765	5.62452110457494	4.59497016584677	4.39177766603409	4.55163465983899	-2.28868165870918	3.97083907685236e-08	3.14073743257349e-06
Merged-chr10-17686768-2	chr10	17686268	17687268	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-36460.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.46064357767699	2.39264040772943	2.35056089692194	2.65763083847542	2.43854369649104	2.61985482397297	1.03645848577317	0.202908920143508	1
Merged-chr17-51179401-4	chr17	51178906	51179906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285991)	promoter-TSS (NM_001285991)	-54.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	9.17574788365095	9.1929119969867	8.65206812161487	9.11335266123043	9.10968304872009	8.63908853682365	-0.0797357988073994	0.757201004542163	0.939819795914786
Merged-chr18-44380394-4	chr18	44379882	44380882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027490)	promoter-TSS (NM_027490)	-118.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	7.12679689372889	7.27566848303658	7.45282019106112	7.00949945969061	7.1620452187333	7.25753688148578	-0.213123108934846	0.388187736053188	0.768177443434021
Merged-chr8-104340326-4	chr8	104339842	104340842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024217)	promoter-TSS (NM_024217)	-252.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	6.94586755194362	6.44504262739429	6.92515414481563	6.80494178852116	6.40481348055942	6.87381903928195	-0.133989889431977	0.65841323456364	0.905014667687917
Merged-chr2-165981706-2	chr2	165981206	165982206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-10931.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.55376388300563	6.53339022531556	6.8937092345683	6.67387012313488	7.24323513047746	7.06990474155453	0.556355282440202	0.0556642769058563	0.303622153812225
Merged-chr11-75510123-5	chr11	75509683	75510683	+	814.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029938)	promoter-TSS (NM_001029938)	89.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	6.37128730754865	6.81304443811156	6.87335479121293	6.74756413065854	6.59295663013052	6.81820903610712	0.0278880551112715	0.921901450398159	0.982542868764899
Merged-chr1-160195927-1	chr1	160195427	160196427	+	709.0	f1_balb.idr	intron (NM_001347121, intron 1 of 2)	intron (NM_001347121, intron 1 of 2)	595.0	NM_001347121	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	5.94345116851352	6.07344457403212	6.00894165223715	6.09137077685028	5.99503533825817	5.87837871132277	-0.0255833124640032	0.930360862251268	0.984492513131011
Merged-chr2-11777623-4	chr2	11777102	11778102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	-17.0	NM_001348236	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	7.14985500869968	7.21749608774295	7.13723102387732	7.15206118995823	7.36688381872254	7.21933406750242	0.124797474342163	0.596303758761903	0.879909519357116
Merged-chr12-111743521-4	chr12	111743021	111744021	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	L1MB3|LINE|L1	-15328.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	5.77401240589145	5.98432371332819	5.96970386466077	5.63950436475062	5.84230761478321	5.71204124068849	-0.306876725335351	0.322370400459974	0.71585482857339
Merged-chr15-86161125-4	chr15	86160619	86161619	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	L1M4|LINE|L1	-24609.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.86903966551721	4.61997407121124	4.98382084035352	4.89875795584991	4.60119306251907	4.5945082744315	-0.272706787318029	0.514492564455678	0.843107848235413
Merged-chr17-63865899-2	chr17	63865399	63866399	+	853.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	1918.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.11153723119439	5.36330886026284	5.27232357519464	5.6049193547765	5.85805265193313	5.46328189485693	0.788527667948983	0.0234491439745426	0.179400181301373
Merged-chr19-56535221-3	chr19	56534716	56535716	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153440, intron 8 of 9)	L1MB7|LINE|L1	12906.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	3.56099572489349	3.95722127155925	3.85215992006943	3.50809597616309	3.00495709736757	3.56776746917916	-1.51788721195831	0.0255940192470949	0.189658350170773
Merged-chr2-91083088-4	chr2	91082583	91083583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12768.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	8.44323514330826	8.42054163248667	8.28531859676129	8.4732226578214	8.57409783309261	8.19023242103125	0.0579466792452266	0.792906485831212	0.950117552895212
Merged-chr12-110694645-2	chr12	110694145	110695145	+	988.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010480, exon 4 of 11)	exon (NM_010480, exon 4 of 11)	1750.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	3.36031173937234	3.27603882851377	3.49750590688333	3.50731776345995	3.28188454905414	3.29151025439879	-0.0444979130154729	0.941605024113083	0.987024728112131
Merged-chr2-25196000-4	chr2	25195507	25196507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146115, intron 1 of 1)	intron (NM_146115, intron 1 of 1)	806.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	6.9186056667437	6.79102613340096	7.36964579243768	7.0777102555623	7.61973187030508	7.40635005721529	0.520914809203447	0.0748739921263464	0.360184722023995
Merged-chr16-32877741-4	chr16	32877245	32878245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-39.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	7.50763440989594	7.73481488156349	7.40926728324817	7.53924178712553	7.48826438607935	7.29662325380428	-0.165975557836286	0.48865238876471	0.829419198815511
Merged-chr4-128658087-2	chr4	128657587	128658587	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	ID_B1|SINE|B4	3385.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.29348804005466	4.30095788780552	4.43420872094848	3.99829180729888	4.258448168043	4.1003638687855	-0.571872354663437	0.225753509122882	0.620701256044383
Merged-chr15-6581089-4	chr15	6580560	6581560	+	864.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	1213.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.84040948455947	5.96565473726912	6.16508617496589	6.10505651369952	6.22038747039527	6.07655005192886	0.262379387151251	0.373660882362473	0.757529198534216
Merged-chr19-32780500-4	chr19	32780026	32781026	+	932.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	22949.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.59786372336899	5.78789946971194	5.60896695415814	5.8209860133445	5.81626798632746	5.80475200210342	0.257039327295755	0.406037609642003	0.780519739017044
Merged-chr2-25499843-2	chr2	25499343	25500343	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013908)	promoter-TSS (NM_013908)	663.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	3.68461161808431	4.01994049043809	3.80210991013025	3.6563174450485	3.76937045756434	4.10675766064504	0.0129628123820721	0.981279127031355	0.995690081075595
Merged-chr13-9281475-3	chr13	9280988	9281988	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	4963.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.30576922422462	3.27231201284344	3.24672912104992	3.23300518715518	3.10377310034125	3.37379036543292	-0.174080579863563	0.780373509718017	0.945998237130197
Merged-chr17-30004813-4	chr17	30004325	30005325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148926)	promoter-TSS (NM_148926)	-214.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	8.53876674914435	8.13201536717864	7.96421534354809	8.52502596820552	8.16534015212904	8.05092603737737	0.0356218439125892	0.893122699643063	0.975200520944414
Merged-chr5-137850462-4	chr5	137849978	137850978	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7571.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	4.05503700671327	3.9803667831727	4.42548078267175	4.47775018404454	4.01793448667058	4.32619056659922	0.342416299003011	0.498226993741671	0.833856267944725
Merged-chr9-35063230-4	chr9	35062700	35063700	+	770.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MYSERV6-int|LTR|ERVK	-53528.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.63686729695932	4.82076194832567	4.75052544569657	4.73101232892911	4.43348237427039	4.95820713049956	-0.0623838794015648	0.884112759695515	0.973466734537782
Merged-chr8-105605113-4	chr8	105604533	105605533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081241)	promoter-TSS (NM_001081241)	-196.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	5.97184743389589	5.8990910081977	5.89607905939773	5.70810725790781	5.71856785397503	5.93364703446375	-0.252723291995404	0.40372559137469	0.778974548258483
Merged-chr7-47013255-8	chr7	47012693	47013693	+	844.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4779.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	4.98788482732636	4.91373637045704	4.54913497865933	5.15631306799541	4.75832913794727	5.36707507870176	0.576535163138526	0.18300939626663	0.566048838173882
Merged-chr17-25728204-2	chr17	25727704	25728704	+	754.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	487.0	NM_001357176	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	4.64731017531056	4.70949098268918	4.40785013071737	4.61874454141514	4.58821005929923	4.47650296748268	-0.0917141819346005	0.829178867191615	0.959990063227229
Merged-chr6-91712963-4	chr6	91712460	91713460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28893.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.76336007002871	7.64782957216167	7.52618324669195	7.54608941907845	7.66758869836315	7.63125748065249	-0.0540373732865116	0.809354102633471	0.954721853010197
Merged-chr8-123034321-4	chr8	123033814	123034814	+	939.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	7970.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.14396868331925	6.3315280444827	6.22214687659643	6.09852214871875	6.62607798559547	6.28245955744365	0.214960460486423	0.479212658971542	0.824136196512039
Merged-chr13-100195651-4	chr13	100195141	100196141	+	925.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 2 of 15)	intron (NM_001126182, intron 2 of 15)	6481.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	5.56267087693978	5.14790247100364	5.68756117904609	5.73095153662136	5.62666963679114	5.69801573308381	0.3902192157792	0.262495424803933	0.66048925903673
Merged-chr2-180692798-4	chr2	180692304	180693304	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111965)	promoter-TSS (NR_111965)	-756.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.23153854808921	5.51652784444656	4.94034668331362	5.49137145472723	5.37982482330658	5.77465094061416	0.553472546059338	0.148123567884009	0.513628453046031
Merged-chr7-98427357-4	chr7	98426862	98427862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13054.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	3.43255883218849	3.41756949756064	3.2675145788469	3.49832695118223	3.12278067364412	3.39786863280587	-0.129303216370929	0.836671718573259	0.962001762335242
Merged-chr12-101740250-4	chr12	101739742	101740742	+	981.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21719.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.12093845045456	4.27495563724754	3.92730312621232	4.095070335023	4.34716775292005	4.19819971754892	0.271579466028888	0.579232470975211	0.872437865758865
Merged-chr3-27439344-4	chr3	27438857	27439857	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68006.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	5.29891640171155	5.3971879506408	5.29925757650036	4.88423096338872	4.76838856347726	4.92330918325163	-1.0192368928286	0.00507305295006961	0.0617764656621385
Merged-chr16-24625741-4	chr16	24625207	24626207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-96148.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	8.43303313730153	8.60015880366632	7.86650956791913	8.23739001910694	8.68165870696244	7.87890553394616	-0.0365956916476456	0.904984745163472	0.978186201733838
Merged-chr15-84245976-4	chr15	84245472	84246472	+	729.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	L1MB8|LINE|L1	13929.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	6.52556025197647	6.86604789972283	7.0542989590724	7.27571444822925	7.33789187749873	7.22183647293588	0.692464314549452	0.00889827218070173	0.0928216536997988
Merged-chr11-114908776-2	chr11	114908276	114909276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18735.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	8.04252822923057	7.69294175397159	7.8792928694268	7.94460711000144	7.95380854177362	7.49388815723988	-0.0815950101202245	0.746669803570669	0.936300236930265
Merged-chr14-73254033-2	chr14	73253533	73254533	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	16142.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	3.15436918352954	3.07261018681573	2.99422408475889	3.10611761708971	3.03405172037943	3.18513058879713	0.120160340634082	0.854205415455314	0.965960851905444
Merged-chr12-69423016-4	chr12	69422475	69423475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50825.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	6.43492822022202	6.40024629445016	6.33042829398876	5.35831325176009	5.07314058150066	5.94269816729267	-1.59221170172756	1.24915350739903e-05	0.000484414894683393
Merged-chr13-81144694-4	chr13	81144209	81145209	+	778.487488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	180635.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.66878372561525	4.3115750114817	4.51158360692297	4.28285098990957	4.20766395980315	4.45413054885316	-0.503300690246065	0.267872464628398	0.665069285576169
Merged-chr7-64340577-2	chr7	64340077	64341077	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172742, exon 16 of 16)	3' UTR (NM_172742, exon 16 of 16)	33518.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	3.4305875229998	3.46206894710067	3.67752332956291	3.30461768152705	3.08758150288305	3.1474556929751	-1.38033517251501	0.0296387818294941	0.207242332644416
Merged-chr11-83789433-4	chr11	83788919	83789919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35782.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	4.03583760537207	3.74301550699374	3.54392908648836	4.09320673902855	3.56846829036787	3.78793449250525	0.12170004484124	0.836958344096595	0.96203384301132
Merged-chr17-43060889-3	chr17	43060377	43061377	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44322.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.13218250178146	7.40887008203797	6.95070504759323	6.29836335021593	6.31010690803394	6.27318284505354	-1.39757513217866	2.58776509876446e-07	1.64745798269314e-05
Merged-chr14-17899783-3	chr14	17899268	17900268	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-81876.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.33591843239396	4.43385809497035	5.0446045276121	4.81979834482829	4.69817150954481	4.87834421951777	0.388124749048154	0.397802416612867	0.774593722474986
Merged-chr19-32953529-4	chr19	32953030	32954030	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195953.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.00523682061541	4.92918710300593	4.67086663039535	4.92139605073501	4.63773808946844	5.40509940715292	0.2897624619353	0.512647645275882	0.842071365374768
Merged-chr4-45528630-6	chr4	45528126	45529126	+	891.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	2202.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	4.79090083222058	4.7284768789189	5.01478635259427	4.91226601969901	4.93556906397767	4.82887095172118	0.126437142433363	0.745128160924446	0.936032341688524
Merged-chr11-80476771-4	chr11	80476294	80477294	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009871)	promoter-TSS (NM_009871)	-229.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	3.72314476953176	3.69298669352271	3.59511716575516	3.54074552839809	3.44075194699248	3.38376490406693	-0.78540009791143	0.168681638396396	0.54534956551608
Merged-chr1-9810850-2	chr1	9810350	9811350	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	12720.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	3.95817438306541	3.83472911929916	3.73786889183651	3.73751553710138	3.72315580096476	4.42894407859691	0.449650268919802	0.437122776754991	0.79976715856888
Merged-chr3-86884174-1	chr3	86883674	86884674	+	871.0	f0_balb.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	36710.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	2.60641722424136	2.56174311928582	2.82604521737074	2.43352672524458	2.42498928414354	2.40328759975003	-1.48722757416604	0.070471567172693	1
Merged-chr3-60569601-1	chr3	60569101	60570101	+	632.0	f0_balb.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	68422.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.30742280480982	5.61095757059968	5.808246720032	5.46450697585676	5.40382628863641	5.32601476307762	-0.344895391787021	0.324513869821191	0.717544999689449
Merged-chr13-13526081-4	chr13	13525601	13526601	+	860.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64308.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	2.76782792804796	2.69291480637543	2.54153970104022	2.66865022530965	2.76367782632315	2.80783861553095	0.3834629326064	0.611567516422146	1
Merged-chr14-74963989-2	chr14	74963489	74964489	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11097.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	4.217801011359	4.63017009025041	4.01792491960704	4.1786076830802	4.05281620833218	3.75040204865552	-0.862086065121024	0.113718317777713	0.45047720950478
Merged-chr14-100934770-4	chr14	100934255	100935255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265314.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	4.10194392998542	4.22466358352082	3.71638774861802	4.19085954981639	3.96433890951579	3.95599358163646	0.000142518436023263	0.999786102499547	0.999966367564366
Merged-chr1-172206728-4	chr1	172206231	172207231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	73.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	8.32833995566635	8.37693986449931	8.08041081736126	8.19363109609309	8.3583372578741	7.85216068062941	-0.157904557412729	0.515519189395988	0.843731721307265
Merged-chr2-36233100-2	chr2	36232600	36233600	+	735.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	L1_Mus1|LINE|L1	2674.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.35115577505342	5.34083075860964	5.34290019533062	5.58046542954158	5.23620430652624	5.52387937243331	0.19907229301535	0.564134551532515	0.866201054824694
Merged-chr12-110606338-4	chr12	110605844	110606844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	Lx7|LINE|L1	4949.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	4.76594038664857	4.92773970266827	4.978688536898	4.95872108574388	5.23599996697032	5.38814585485951	0.662396092497328	0.0837884561582434	0.383090821474538
Merged-chr1-59764707-6	chr1	59764202	59765202	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007561, exon 1 of 13)	exon (NM_007561, exon 1 of 13)	423.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	6.19725120082093	6.15081052077041	6.32805582051052	6.18526297886994	6.22154438621257	6.45986412256135	0.108379169581957	0.701490523177921	0.921353558219906
Merged-chr6-13070582-4	chr6	13070070	13071070	+	862.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 2 of 8)	intron (NM_027992, intron 2 of 8)	811.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	5.851980085953	6.02982661872642	5.45469041167144	6.08854872607734	6.20293456832346	5.94499470298251	0.474808941585968	0.151207369173173	0.518506648409409
Merged-chr8-105304118-4	chr8	105303611	105304611	+	783.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-1490.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	4.69746158923642	4.26112991472027	4.86779705861119	5.40984179649485	4.9736610912545	5.29486177217725	1.34163953462396	0.00211602963053736	0.0322355535514011
Merged-chr12-112670347-2	chr12	112669847	112670847	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3929.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	3.92104678503563	3.91560537531715	4.25406157061055	3.96150288367867	3.50849909220777	4.19574790919657	-0.364118574893997	0.525318683509486	0.848982097510195
Merged-chr12-78894321-4	chr12	78893826	78894826	+	939.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013738, intron 5 of 8)	intron (NM_013738, intron 5 of 8)	12612.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	3.30073419668207	3.02362498364532	3.18181424597027	3.15708833832841	2.75638515154178	3.19700169705925	-0.550598971184727	0.441091646008563	0.802258247414482
Merged-chr11-116274546-2	chr11	116274052	116275052	+	972.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	-335.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	7.02531667794588	6.79998569954278	6.73100134525145	6.91083492338141	6.81623526859184	6.43185025044416	-0.181779431870894	0.514453381112106	0.843107848235413
Merged-chr9-56950867-4	chr9	56950362	56951362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178374)	promoter-TSS (NM_178374)	-62.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	7.60528089039397	7.79221344674094	7.57197120434403	7.76621586579371	7.68661715753371	7.48700694659754	-0.0104630796915397	0.96387415140552	0.991213692099629
Merged-chr5-149242646-1	chr5	149242146	149243146	+	698.0	f0_balb.idr	Intergenic	Intergenic	-22358.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.19346649472955	5.23092984714635	5.60325460096455	5.38782987208839	5.2520642749111	5.78537775642786	0.268052456256064	0.475529908087486	0.822036244487131
Merged-chr1-152386624-4	chr1	152386128	152387128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025677)	promoter-TSS (NM_025677)	54.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	2.93034050823867	2.91274915776743	3.00115418859718	3.03806727012705	2.88131309767534	2.95402321352944	0.0536485978566746	0.936918108361373	0.986037792257163
Merged-chr3-90267286-4	chr3	90266789	90267789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201407, intron 1 of 27)	intron (NM_201407, intron 1 of 27)	775.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	7.7714106689762	7.97731350598651	7.40662256980748	7.76454954828849	8.1928060363377	7.561175759139	0.184896733586748	0.515977985959931	0.844017776514782
Merged-chr11-86996560-4	chr11	86996041	86997041	+	774.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2779.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.37892871671574	5.35859683639007	5.55263699860816	5.33745250588094	5.59282595561085	5.8843302506789	0.359252777374463	0.304810172687438	0.701123221294327
Merged-chr3-89459165-4	chr3	89458653	89459653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026784)	promoter-TSS (NM_026784)	35.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	5.81945351976796	6.00276707552506	5.53331186897745	5.79636454807963	5.90365740494487	5.89570639054247	0.0944655645704911	0.768545582041119	0.942871018290895
Merged-chr9-110890017-5	chr9	110889525	110890525	+	848.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 12 of 25)	intron (NR_153354, intron 12 of 25)	9703.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	3.01790262861628	3.02776047046707	3.31517830663419	3.00210271190486	2.88377111487709	3.1701732723075	-0.465603942192754	0.494335742463801	0.831938319365948
Merged-chr9-3403846-7	chr9	3403358	3404358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-227.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	7.68496668291472	8.25614258931178	7.66463805983188	8.24333862536202	8.31474899819545	7.79507911044673	0.334659707587213	0.236475552436956	0.632745673713476
Merged-chr5-143487199-2	chr5	143486699	143487699	+	599.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_144915, exon 8 of 15)	exon (NM_144915, exon 8 of 15)	22706.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	4.29719558108339	4.2977973566331	4.66810782086384	4.57591296010369	4.38194696930792	4.27660265539829	-0.00302928592175859	0.994735619353457	0.998961028701257
Merged-chr2-20962016-3	chr2	20961516	20962516	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	5705.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	4.45816302425804	4.61775047327838	4.27206378187194	4.30483206258149	4.55284803014286	4.43261951848727	-0.0688473283258639	0.87831162056493	0.971842464414451
Merged-chr7-16048321-4	chr7	16047802	16048802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23543.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.1981387602106	7.1919592992262	7.12431880786586	6.70525857820122	6.90539304217891	6.88762184126127	-0.514214285887897	0.0341517717414071	0.22614201997923
Merged-chr2-137969397-3	chr2	137968918	137969918	+	970.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287166.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.24421205139708	4.60876502428352	4.32316371962065	3.84449045610315	3.96052649649057	4.11712279350759	-1.2181968047459	0.0135292128609069	0.123870900498497
Merged-chr2-155274928-3	chr2	155274493	155275493	+	668.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	2.84441781026692	2.8361545224956	2.9600206869262	3.05816153006621	2.89531400138773	3.25765217412897	0.910152235705831	0.190372518925819	0.57662686304756
Merged-chr10-10462611-1	chr10	10462111	10463111	+	1000.0	f0_c57.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	9703.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.83922488971645	3.77616125287571	4.04700422816677	5.09615801473225	5.10878932819889	4.8003549791325	3.07874243353075	2.41039087907373e-10	2.94081824436901e-08
Merged-chr7-140125620-4	chr7	140125103	140126103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346725)	promoter-TSS (NM_001346725)	-54.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	5.65277727006384	5.83538562529937	5.98576583273782	5.70513363699012	5.69115414569511	5.98045830680215	-0.0624845686262537	0.845028642124198	0.963760118842549
Merged-chr15-64055114-2	chr15	64054614	64055614	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	4650.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.9080508968968	3.81209669044535	3.82096893139106	3.82800773461001	3.88043786162339	3.94023532688615	0.102968519504272	0.839752158423718	0.962784121274377
Merged-chr4-126320645-2	chr4	126320145	126321145	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133883, intron 1 of 5)	intron (NM_133883, intron 1 of 5)	1058.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	4.18688451700157	4.2599719484738	3.94043317807865	3.90455920245147	4.03776099541028	3.85162154884688	-0.596474081185371	0.23874267113363	0.635449458992732
Merged-chr7-45815145-2	chr7	45814645	45815645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-829.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	3.36124371646938	3.22197053860739	2.97653009856804	3.06660558302049	2.88827993985834	3.39802557169973	-0.290538948536833	0.683066712958454	0.91523316791368
Merged-chr11-69850133-3	chr11	69849636	69850636	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031880)	TTS (NM_031880)	3492.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	6.2278244755177	6.32130258875188	6.27280298335881	5.06471038137518	5.28815925593494	5.35550219028043	-1.89240776285761	4.08622027313729e-09	4.06220091382566e-07
Merged-chr11-109611744-4	chr11	109611244	109612244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145940)	promoter-TSS (NM_145940)	-355.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	5.95222857247915	5.59165229860754	5.98511587383086	6.13469595805321	6.06302715609885	5.95337123781201	0.363630081865991	0.243592602549355	0.640790783501209
Merged-chr7-128049002-4	chr7	128048486	128049486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13654.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.19283582395844	5.25685180466229	5.32110468647476	5.244277932416	5.43224856406149	5.00975678531049	0.00133977483735956	0.997058333375509	0.999305289467698
Merged-chr14-20845513-3	chr14	20844992	20845992	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8830.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.36821934030875	6.59854545296531	6.48755645777868	6.7535813031304	6.82933045754526	6.52882204313619	0.366908037459934	0.173011284864058	0.551737045491665
Merged-chr11-44540443-4	chr11	44539920	44540920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	MTD|LTR|ERVL-MaLR	21043.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.56244929282958	5.703144483948	5.79204776140774	5.95496143124001	6.22878284765203	5.80261307114914	0.598912631011513	0.0603355395618143	0.317968178849797
Merged-chr1-38129937-4	chr1	38129433	38130433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359287)	promoter-TSS (NM_001359287)	-267.0	NM_001359288	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	7.35979841669087	6.81659117726809	6.68127464318521	7.24146075971393	6.35935500642986	6.74055236969569	-0.243647516692884	0.487076700448624	0.828231456470534
Merged-chr2-181864346-4	chr2	181863844	181864844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025901)	promoter-TSS (NM_025901)	-16.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	5.68380091728214	5.86271022686366	5.63951461841838	5.70204835104317	5.74858434422589	5.49865636307571	-0.137312162898047	0.668534305495276	0.909204788456481
Merged-chr14-40962525-2	chr14	40962025	40963025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	4371.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	2.49365526373194	2.54596707060814	2.66999006703031	2.32980869805449	2.2482043296128	2.62296578235488	-1.03027095401754	0.226270006536961	1
Merged-chr10-60817040-4	chr10	60816543	60817543	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	14538.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	3.41708320101758	3.20845662782022	3.17734050296318	2.98971718237795	3.09126862498828	3.13137994981587	-0.881283303561673	0.177833243284215	0.55892688546374
Merged-chr15-3340033-4	chr15	3339488	3340488	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048178, intron 6 of 8)	intron (NM_001048178, intron 6 of 8)	-36462.0	NM_001357801	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	2.14732198870777	2.20111179776615	2.24626520249211	1.92040977134874	1.84151657135266	2.05782511762902	-2.35290000920587	0.0252029794914801	1
Merged-chr10-80115649-4	chr10	80115135	80116135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011492)	promoter-TSS (NM_011492)	-168.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	7.85990699558186	7.71193776419881	7.64350866695555	7.88348914777453	7.81988003076609	7.78065982829684	0.12117003213313	0.579415172510127	0.87250443698034
Merged-chr1-60627613-4	chr1	60627105	60628105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60840.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	6.78390245130931	6.7569681554337	6.34340233745849	6.4491019156126	5.99794042124995	6.23828262794485	-0.67470908119925	0.0261805079602373	0.192122972860179
Merged-chr4-130807034-4	chr4	130806517	130807517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	14480.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.65905330147011	7.03708132481078	7.00380976351119	6.88221341837815	7.00809363739067	6.65894136599725	-0.0651282261420585	0.811388263266954	0.955260549690371
Merged-chr2-166696815-4	chr2	166696294	166697294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MTD|LTR|ERVL-MaLR	17038.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.46354648331375	6.83318998186589	6.77597762989115	7.46925458412693	7.72307513590012	6.94638744567895	0.527243088074627	0.110927042389647	0.444841551070303
Merged-chr4-97814687-3	chr4	97814161	97815161	+	884.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37035.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.52204488007825	3.62349174737201	3.55243279200891	3.23707132287016	3.21309580925455	3.10008531341032	-1.51917516962461	0.0157276370747602	0.137306182532436
Merged-chr7-30423033-7	chr7	30422497	30423497	+	977.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172142)	promoter-TSS (NM_172142)	-278.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	8.46942734072791	8.72144619070241	8.23025623827699	8.42097245391827	8.61038453166869	8.22570396142517	-0.0851348526038109	0.72538592478105	0.92968458064448
Merged-chr2-18688974-4	chr2	18688511	18689511	+	887.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10011.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	2.9285101676825	2.73256783977727	2.6832034768985	2.95367043702258	2.59535188065498	2.88468997121197	0.148387893482918	0.845202770624119	0.963760118842549
Merged-chr15-55564928-4	chr15	55564513	55565513	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168250, intron 5 of 16)	intron (NM_001168250, intron 5 of 16)	7605.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	2.8673869944637	3.07763527839715	3.06075863991174	3.02545956974019	3.25669620868242	3.30217002147694	0.859441537519749	0.201286022249903	0.590842323327686
Merged-chr16-25053739-3	chr16	25053230	25054230	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5909.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.97862267675153	5.9156922468483	6.11916190725228	5.92950840667035	5.61504044883752	5.9390367844485	-0.30909233770129	0.319802470062295	0.713720330530954
Merged-chr15-80255134-4	chr15	80254643	80255643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-41.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	9.18431105886787	9.42914777223203	8.99099751582173	9.10787037799601	9.55210825808279	8.83897766597197	-0.0128622745677243	0.961023235439681	0.990386809359123
Merged-chr7-141568509-4	chr7	141568005	141569005	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	6325.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	5.86989977372752	6.07781330614319	5.76674574969889	5.94972929429037	6.07421429493879	5.63215035787383	-0.0120010186008842	0.970343961378874	0.993446536222526
Merged-chr11-86908046-4	chr11	86907564	86908564	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	85698.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.2039126773978	5.42154557344862	5.51582097512911	5.45702169675206	5.30073260682402	5.46560545394747	0.0468447375954154	0.891718778455386	0.974931491836594
Merged-chr5-142899515-6	chr5	142899056	142900056	+	791.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-4318.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	4.0939010792213	3.96859235199563	4.29712504361204	3.81529057843271	3.83195639137277	4.47939319149285	-0.145010415390781	0.791684127376776	0.949801788897381
Merged-chr2-76115905-2	chr2	76115405	76116405	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-133938.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	2.62871625964487	2.4220505227497	2.59169560210277	2.67923794708064	2.6160403131328	2.72790914525551	0.703057548198653	0.362194742080767	1
Merged-chr17-86968562-1	chr17	86968062	86969062	+	581.0	f1_balb.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	5451.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	3.89760224880445	3.84963064473656	3.83678758656911	4.12013814678345	3.86575803276927	4.19236665821805	0.591468999516609	0.245464426858501	0.642586252321604
Merged-chr7-101378573-2	chr7	101378073	101379073	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	451.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.93457363931212	6.66066611300666	6.94700621166074	7.26838466367757	7.27627426826286	7.18573736950953	0.603333907898103	0.014599634453417	0.130134588494903
Merged-chr16-93034158-4	chr16	93033669	93034669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-208095.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.39523686523823	6.07632898380851	5.99435984816544	5.99151111366736	6.05436899648143	6.50795444303586	0.0363355341414098	0.910397381033634	0.97984424692051
Merged-chr2-109917577-4	chr2	109917075	109918075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172671)	promoter-TSS (NM_172671)	-72.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	4.60998865459348	4.2665280777485	4.31284044355782	4.56751189103724	4.12673285801398	4.28889270130574	-0.183781354066837	0.700173496829242	0.920903457324348
Merged-chr4-145200249-4	chr4	145199793	145200793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5288.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	6.75991430770912	7.09036470370296	6.65530131711298	6.46101216861989	6.51308843759227	6.56065935083186	-0.547527017507059	0.045139522942305	0.268090005933621
Merged-chr17-34250747-3	chr17	34250257	34251257	+	876.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11852.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	4.46897378367523	4.13126044175668	3.63254149019601	3.46335617770607	3.40884685019632	3.46068114209953	-2.32602941451589	0.000203082674958037	0.00507927030013711
Merged-chr7-126862450-4	chr7	126861976	126862976	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172746, exon 1 of 7)	exon (NM_172746, exon 1 of 7)	504.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	6.23829754836331	6.55917861776152	6.44453032089124	6.75005457952762	6.72968298506945	6.48573274732864	0.394076085973636	0.153650925597437	0.52260408016316
Merged-chr10-117223174-2	chr10	117222674	117223674	+	870.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 1 of 6)	intron (NM_026570, intron 1 of 6)	1333.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	3.52920923440101	3.33432519068953	3.4872251674823	3.44932053749674	3.53698145690409	3.61057477697033	0.296999496479185	0.607175914021725	0.884448083779426
Merged-chr8-85492497-4	chr8	85492041	85493041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173866)	promoter-TSS (NM_173866)	-76.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	6.013265925248	6.3433144146414	5.87883629860962	6.11613608191431	6.29707997574209	5.49932394068254	-0.122167296445848	0.737378116163926	0.933692850573981
Merged-chr13-95844478-4	chr13	95843979	95844979	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	47443.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.36958687068119	6.28007603687284	6.28010497973819	7.01998404424592	7.33174076235011	7.09591990866878	1.32938128187951	3.54176648910921e-07	2.17975818066419e-05
Merged-chr1-157140620-2	chr1	157140119	157141119	+	921.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-31939.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.53983507361365	6.68652662822785	6.12338556084047	5.96908335148698	5.82691667171634	5.78497109112967	-1.04422048715084	0.000760543142369969	0.0146015860153024
Merged-chr5-90700367-4	chr5	90699847	90700847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58951.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	5.91796385780242	5.92179968875424	5.55611859985405	5.40906214824641	5.32775749768058	5.3404198992123	-0.865908446263616	0.00915443097021231	0.0946826466338628
Merged-chr4-63558681-4	chr4	63558164	63559164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-99.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	8.60411469576703	8.73463788360748	8.17634098336794	8.68829314293745	8.7688207330404	8.10043845935085	0.0374816389832911	0.892511861064724	0.975146620821922
Merged-chr6-125000209-2	chr6	124999709	125000709	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 3 of 5)	B2_Mm1a|SINE|B2	1599.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	3.42581747029189	3.44057103440211	3.73026886044009	3.35657818356741	3.24347808121235	3.3315685388891	-0.85892048485213	0.156132103021707	0.526443391294178
Merged-chr8-24987659-7	chr8	24987153	24988153	+	923.334534	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 11 of 21)	Lx4A|LINE|L1	29269.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	4.7755999831801	4.64432602671079	5.02272956026719	4.73463056300781	4.77587662307662	4.68948016217006	-0.173280933494296	0.669336079602235	0.909615408611738
Merged-chr9-72797252-4	chr9	72796746	72797746	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10028.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	3.38095796614283	3.49303275990649	3.3714755936786	3.72165905034733	3.7187589387989	3.71972085922245	1.07398621221224	0.0583153423185336	0.312055552011159
Merged-chr6-71908171-1	chr6	71907671	71908671	+	543.0	f1_balb.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	591.0	NR_155285	69956.0	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	4.7886408056701	4.75466000722451	4.52846485171152	5.06990201432454	4.64846722287629	4.80511974496443	0.334873828389206	0.424118994423866	0.792465941076554
Merged-chr2-155404332-2	chr2	155403832	155404832	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22476.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	7.60144207506173	7.53889873524589	6.93839447457039	7.11354819662637	7.21851649018072	6.42128965202448	-0.63331182402526	0.0576116076726081	0.309973918604745
Merged-chr10-77258264-2	chr10	77257764	77258764	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_026944, intron 1 of 1)	intron (NR_026944, intron 1 of 1)	959.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	2.80743938927649	2.95422800379358	2.89406850243265	3.13188133370869	2.89342642783031	3.14505094816692	0.798421495239792	0.249471486429325	0.646365357085824
Merged-chr14-54409419-4	chr14	54408916	54409916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	56.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	8.07432083543643	8.10759937122696	8.17220984098575	7.86822054569226	8.14239022087819	7.75861586719427	-0.248527507754018	0.274588307447367	0.671921605426063
Merged-chr7-101901772-2	chr7	101901272	101902272	+	810.714294	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 2 of 3)	L2c|LINE|L2	2013.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	5.94283369688889	5.86325396421399	5.66528450864255	6.04252390720267	5.90806688338237	5.70005743886042	0.107349879405831	0.732526003912416	0.931782229960786
Merged-chr11-68458322-4	chr11	68458001	68459001	+	999.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	26376.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	7.18616389447988	7.06097664427584	6.90278084490671	6.71038583818441	6.32900549286147	6.70428657895119	-0.740992054476661	0.00641854943833696	0.073402234973219
Merged-chr1-172207386-4	chr1	172206868	172207868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	-564.0	NM_011063	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	7.55298483072763	7.42901283182194	7.25508060215212	7.30790071069137	7.5288746487685	7.15069249183609	-0.111400909566436	0.655395163058483	0.904253611535387
Merged-chr2-6278224-2	chr2	6277724	6278724	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	Lx5b|LINE|L1	-44533.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.15694461689619	3.19749728021826	3.08646112021032	3.03745117978287	2.82322594365122	3.03969948449021	-0.854619983959895	0.207108961386234	0.597920729067479
Merged-chr8-120721159-2	chr8	120720659	120721659	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15199.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.37104423835351	3.45433169394282	3.93107915243043	3.38043080769789	3.42488230597341	3.52092050072725	-0.5708168394497	0.35298491757546	0.74042924884689
Merged-chr13-102689865-4	chr13	102689349	102690349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3698.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	8.2475439648973	8.20955010858856	7.95154018128284	8.34164326108408	8.61420566006888	8.06898451087941	0.310159548486984	0.206984630951126	0.597805524893486
Merged-chr6-82835808-3	chr6	82835310	82836310	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	46043.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	4.07123265955062	3.99346677585063	4.14108230877384	4.17535579219306	3.9769434130938	3.9177826349753	-0.105794251282162	0.829530246245159	0.960114979147503
Merged-chr8-117258073-4	chr8	117257577	117258577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	(T)n|Simple_repeat|Simple_repeat	1058.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.65790194588741	7.85122593357103	7.66656124995973	7.83860243153961	8.04628259884102	7.88526439233925	0.285516096834368	0.200420873233411	0.589383990811298
Merged-chr7-19004883-2	chr7	19004383	19005383	+	854.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_178757, exon 1 of 1)	exon (NM_178757, exon 1 of 1)	818.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	4.10047155003415	4.19704958199961	4.44521156001016	4.07915675930541	4.21859105556585	4.43117825721072	-0.00568173078276675	0.990515787349074	0.997892660866058
Merged-chr19-23246755-4	chr19	23246260	23247260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252684, intron 8 of 24)	L2|LINE|L2	25839.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	4.98548935764439	5.39929897164014	5.4480737556585	5.38856065169701	5.3810755424225	5.61844671857325	0.337601451986459	0.354389234754633	0.741552937201367
Merged-chr16-95709414-2	chr16	95708914	95709914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	7007.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	6.72185977969821	7.21497509458377	6.84820983774383	6.53662540198787	6.69528454696726	6.67427565564052	-0.488691733331397	0.0788281247446673	0.370889742558057
Merged-chr11-106305535-3	chr11	106305037	106306037	+	727.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3641.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	5.14596490744005	4.87638481074301	5.00834825419932	5.30955233563575	4.811933825098	5.03801449992612	0.107191031747007	0.787103403886128	0.948693859994902
Merged-chr10-77539839-3	chr10	77539421	77540421	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	9573.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	5.06218554553826	5.21722739220769	5.61165498140838	5.4304474944917	5.48674279312458	5.45701803446079	0.305740529224405	0.398161225400401	0.77491652996431
Merged-chr15-89175636-4	chr15	89175140	89176140	+	987.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-1689.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.77520923318619	5.50271302003373	5.82164754668823	6.09328475772297	6.0241413596583	5.88333114384887	0.546979801878967	0.0791310257991477	0.371786244759768
Merged-chr2-150897247-4	chr2	150896743	150897743	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B1_Mur4|SINE|Alu	7488.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.50054055900913	6.65574716385104	6.54809680576184	6.56367246817443	6.4233645878065	6.48357645852144	-0.132089215260783	0.614585951879829	0.887509542539593
Merged-chr13-21975018-4	chr13	21974512	21975512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6169.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	7.03316588340499	7.56445714297349	7.06467380639514	7.12619632661466	7.66303116119407	7.30864937213853	0.207729500992813	0.478243852137393	0.823664737206304
Merged-chr5-145167112-4	chr5	145166599	145167599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	5.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	6.72546439489261	6.64209668979762	6.72011859598955	6.5369509467052	6.92007618313064	6.76324810028845	0.094835328065058	0.721145742666276	0.928418800211379
Merged-chr1-34436500-2	chr1	34436000	34437000	+	803.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027159)	TTS (NM_027159)	3172.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	3.7920610541642	3.72489709381243	4.0079578368376	3.75081387734584	4.03646491921761	4.20728569746517	0.512677123451557	0.333863236939741	0.724614206827878
Merged-chr10-127586840-2	chr10	127586340	127587340	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34308.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.17363229566296	4.81969909838758	5.34095623158927	4.67605257191282	4.58490302859133	4.93738277256312	-0.861728341411857	0.0381198946709511	0.241621474497643
Merged-chr2-83742969-1	chr2	83742469	83743469	+	788.333313	f0_balb.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	18572.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.3290644601334	4.46513744790274	4.76500346391193	4.4407314771999	4.3873595946179	4.68504349047949	-0.0490165824424479	0.913011897348081	0.980521208172103
Merged-chr15-103324155-4	chr15	103323662	103324662	+	973.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	10176.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	4.65366801042466	4.42242988695149	4.60801144271484	4.77441545604377	5.04896611334663	5.01057727841308	0.897096360482996	0.0276203701129263	0.198295146819378
Merged-chr3-108459016-3	chr3	108458464	108459464	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358064, intron 21 of 21)	intron (NM_001358064, intron 21 of 21)	-13705.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	3.63334597336273	3.74235704221631	3.8898899576888	3.78975888708557	3.79356040788381	3.7074876392316	0.0456134584312898	0.931757869054957	0.984929477721491
Merged-chr1-16687848-2	chr1	16687351	16688351	+	809.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-605.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	6.81362320480469	7.15904718034273	7.08390305088344	7.08676525180429	7.36621214517305	7.26219873178443	0.330929331854332	0.195345679971898	0.583020169139918
Merged-chr1-85105516-1	chr1	85105016	85106016	+	758.0	f1_balb.idr	intron (NM_213615, intron 1 of 6)	B3A|SINE|B2	4337.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	2.56940709345608	2.84539635625766	2.899218562743	2.5985941775723	2.28565273605965	2.54304343265971	-1.78447493083013	0.0405260627654033	0.25086241858233
Merged-chr4-59785253-2	chr4	59784753	59785753	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	4.91721383410513	5.50938644996477	5.30405985230729	5.4659699698045	5.46174499619621	4.94075947203376	0.104386734989477	0.798174203633949	0.951930937621884
Merged-chr9-116166014-2	chr9	116165514	116166514	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	9349.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.07300840998048	5.28221661957908	5.37942425155473	4.49191467219984	4.59334385933124	4.83185761532273	-1.34693129760208	0.000725752424243314	0.0140503507948901
Merged-chr15-66795449-2	chr15	66794949	66795949	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 2 of 7)	intron (NM_001029841, intron 2 of 7)	36380.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.06210698187833	2.94748008146645	3.35287677742934	3.03553949630213	3.0920127538188	3.57135696518309	0.506214681175313	0.468517479995837	0.818673566064062
Merged-chr10-128232187-4	chr10	128231695	128232695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008600)	TTS (NM_008600)	132.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	5.5672163096277	5.52999666667465	5.92763395986288	6.04617016811866	6.07333595362358	6.38438948751717	0.872447614687644	0.00663876669284341	0.0751767146132437
Merged-chr3-59220666-3	chr3	59220192	59221192	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-9810.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.73508169534941	4.82829893641486	4.69882435080676	4.7552215507245	4.92596928423391	4.64140056950449	0.0720882679322029	0.857621205554534	0.966767080388296
Merged-chr1-172501861-4	chr1	172501362	172502362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	1616.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	5.41878782533206	5.24118221377222	5.09094908487683	5.63263196228172	5.54343522467029	5.29726740947056	0.467222044257517	0.186625473180016	0.571308354084204
Merged-chr11-54921103-4	chr11	54920649	54921649	+	710.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18295.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	5.58822883395764	5.86753987520558	5.85043480502873	5.12949282731069	5.44038997594069	5.2765324390364	-0.902027620456876	0.00904811743529473	0.0938662037283452
Merged-chr11-31812988-1	chr11	31812488	31813488	+	669.0	f1_balb.idr	intron (NR_102312, intron 1 of 4)	B3|SINE|B2	11559.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.50589280057646	2.46404472221394	2.58626781608474	2.59707970418478	2.19882095369256	2.40213700687084	-0.672776347064093	0.434891985941215	1
Merged-chr1-127981228-4	chr1	127980704	127981704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	112431.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	6.63254801319272	6.24652066205444	6.18295067870139	6.7436587068332	6.74114530480166	6.41126518109181	0.434107985675859	0.143396994039424	0.505462897978378
Merged-chr1-183637142-1	chr1	183636642	183637642	+	566.0	f0_c57.idr	Intergenic	Intergenic	-111835.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	2.69751565220603	2.62549838290569	2.64118413055543	3.02506120258469	2.86290459282664	3.14137970409381	1.85050481546522	0.013992228930934	0.126688289976622
Merged-chr18-10726973-3	chr18	10726472	10727472	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144860, intron 1 of 20)	intron (NM_144860, intron 1 of 20)	1347.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	6.18276111690271	6.44401813455861	6.6291800299014	6.17659645365208	6.15238974421958	6.44046108543355	-0.27921851022255	0.345734274457462	0.734152876156979
Merged-chr1-155812894-4	chr1	155812389	155813389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023268)	promoter-TSS (NM_023268)	10.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	6.87159787625846	7.25960397265941	7.07291333816737	5.69963369726993	5.44489653141309	6.10881984111544	-2.17858328697732	6.93597561171486e-12	1.16591648222135e-09
Merged-chr5-81044644-2	chr5	81044144	81045144	+	608.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	23051.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	4.05654763799437	4.20792947701781	3.91306991568472	3.6319231080366	3.9526176999408	3.77248511727795	-0.826100417399386	0.122959628383196	0.469148413250216
Merged-chr4-40156296-4	chr4	40155812	40156812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	13047.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	4.99421741267408	5.26471582363757	5.20004972741329	5.50666854219236	5.21951296876726	5.68819389552434	0.628760181298632	0.0881619513495287	0.394057780827868
Merged-chr4-3624147-4	chr4	3623642	3624642	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32364.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	2.7986401453686	3.09139666965441	2.86013346982154	2.95618737817677	3.02062996989469	3.33485673289688	0.824877192593838	0.249328762222591	0.646251553365766
Merged-chr10-116580638-2	chr10	116580138	116581138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359248)	promoter-TSS (NM_001359248)	-102.0	NM_001359248	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	6.91657513632503	7.25996826482812	7.05392150706552	7.34203475454135	7.41136221783337	7.15075867602984	0.335971825711058	0.181511075587497	0.563824749971419
Merged-chr4-119964766-2	chr4	119964266	119965266	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150088.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	5.25823210791329	5.03429408968268	5.28330287245725	4.14856552073367	4.31177219285076	4.54493317033091	-2.02858501357304	2.60928760911469e-06	0.000125920833926237
Merged-chr13-20207259-4	chr13	20206751	20207751	+	714.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	116744.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.75899049988565	4.41518147476306	4.5634797676811	4.3014233227813	4.29152763058475	4.5895547143619	-0.500582539578655	0.264126175936171	0.661984744638823
Merged-chr5-149246197-4	chr5	149245680	149246680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18824.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	6.79654902920641	6.99829470633822	7.209450179218	6.98749633215234	7.28953730305447	7.18524914082958	0.238926885847686	0.360452692322219	0.746659056056839
Merged-chr2-129490085-4	chr2	129489570	129490570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46532.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	8.14433142219696	8.22532416461477	8.09317754946875	8.18983815139213	8.43120147089133	7.94631544451331	0.0782949973740226	0.736521580875844	0.933162099179542
Merged-chr19-60811628-4	chr19	60811148	60812148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	93.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	7.66352610739163	7.85395235057373	7.43882200760381	7.01559830816588	7.05944828968405	7.01244521616718	-0.947168474748163	0.000102218241163721	0.00288807314456736
Merged-chr18-37655729-4	chr18	37655229	37656229	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301259, intron 1 of 3)	intron (NM_001301259, intron 1 of 3)	-6216.0	NM_033584	93709.0	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	4.28838015625696	4.84106125295574	4.82422616834782	4.5565704707339	4.68725176029772	4.45094076205463	-0.235407284256753	0.606871964694688	0.884353808026542
Merged-chr4-132960929-2	chr4	132960429	132961429	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13166.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.07136750644602	6.13498302205187	5.94646080397856	5.68283118741872	5.86090445827276	6.07497479152055	-0.320325387435137	0.29513787650669	0.691990077927385
Merged-chr16-11006230-4	chr16	11005731	11006731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2667.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.83066595508633	7.72534320933843	7.74854150013997	7.53348009319284	7.84898000810455	7.67226333279894	-0.105772375359756	0.642032140615118	0.899291630974571
Merged-chr11-75573341-4	chr11	75572841	75573841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-14738.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	6.1611717596039	5.61305774516422	5.95038955016754	6.19433080523593	6.09199269619562	5.81160563205614	0.210032643572766	0.527753467183689	0.850108008834301
Merged-chr19-7335913-2	chr19	7335426	7336426	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	5934.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	3.97287271421781	3.60892784695311	3.70865562746535	4.02128826939498	3.85863413508167	3.98475795079627	0.55419205072354	0.300644216108236	0.697365586816021
Merged-chr9-94668871-4	chr9	94668377	94669377	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1015.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.84622368846742	5.14089256976186	5.22375184803078	4.60683140024485	4.52583009547086	5.10361499040149	-0.705136825623869	0.100180649151021	0.422110160753399
Merged-chr2-5062870-2	chr2	5062370	5063370	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 1 of 13)	intron (NM_001356487, intron 1 of 13)	1247.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	4.0564963427286	3.95611588655418	3.75601953666535	4.23065542008756	3.88077476784855	3.65473261713105	0.0452671102557049	0.935076999002854	0.985758101267319
Merged-chr11-79673898-4	chr11	79673403	79674403	+	747.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045898, intron 2 of 2)	intron (NR_045898, intron 2 of 2)	1183.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.86709880823016	3.79261741784905	3.69735771671072	3.64896527168735	3.6425517241616	3.96374597368758	-0.13119403156128	0.80900092816725	0.954721853010197
Merged-chr5-115273989-3	chr5	115273461	115274461	+	833.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1066.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	4.22544453473051	4.2246922837505	4.33046445990776	4.12389873239102	4.47299407322044	4.16978245935561	0.0515692624301552	0.912937185606853	0.980505425561801
Merged-chr5-120534915-2	chr5	120534415	120535415	+	718.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133221)	TTS (NM_133221)	23723.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	2.04072637190976	2.01056107127178	2.25519624056094	2.0321257401323	1.83414741161099	2.26689751757268	-0.370385350117057	0.706887968277646	1
Merged-chr15-39778292-4	chr15	39777787	39778787	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-18758.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	2.99557197456074	2.85863252178012	2.95050313222919	3.25230522508349	3.08564548731691	3.08428693080972	0.966462269850987	0.150724500969627	0.517729700985831
Merged-chr1-131472291-2	chr1	131471791	131472791	+	902.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	GA-rich|Low_complexity|Low_complexity	55070.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.18019033702997	5.01421106631277	5.24589141739774	5.38701602158009	5.22921385480421	5.24572544918466	0.295089394829249	0.4046284609701	0.779747209915063
Merged-chr9-48493936-3	chr9	48493442	48494442	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 2 of 4)	ID_B1|SINE|B4	1388.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	6.97695382823934	7.36929324147398	7.049576091941	7.03445122410995	7.13372301523718	6.85102028780655	-0.1962185340622	0.455737666723742	0.811115753793496
Merged-chr4-63215962-3	chr4	63215445	63216445	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025685, intron 1 of 60)	CpG-9975	533.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	2.28361116881665	2.43198836229266	2.52465462461958	2.55382746481137	2.35638814210637	2.59853221674899	0.545468433409032	0.506271196786588	1
Merged-chr6-120453383-4	chr6	120452890	120453890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9807.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	5.52815849431894	5.37710355393818	5.27654434568857	4.86476225956892	5.12653590453077	4.79207374609153	-0.929069154467949	0.0141949653623567	0.128022401676889
Merged-chr5-147075764-1	chr5	147075264	147076264	+	765.0	f1_balb.idr	intron (NM_080795, intron 1 of 9)	PB1D9|SINE|Alu	808.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	5.14871205408074	5.47403500899238	5.32951266717712	4.46043561525606	4.41933158390043	4.52850162491089	-1.94816709926244	1.39565497552958e-06	7.26718768484765e-05
Merged-chr11-119087498-4	chr11	119087006	119088006	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	2.94939688381343	2.87400105749963	3.16744001766959	3.09109453192234	3.15657236569686	2.87999847345804	0.255385690279063	0.713193499606238	0.92541785131338
Merged-chr13-47230524-4	chr13	47229995	47230995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36492.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.50113297014041	7.40239983792268	7.71546446165062	6.83301542786245	7.11376576930367	6.93363048808194	-0.849439591435157	0.000712124797147706	0.0138413938750046
Merged-chr9-118776762-2	chr9	118776262	118777262	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 2 of 13)	ORR1C2|LTR|ERVL-MaLR	65070.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.62816469393274	2.98047688138268	2.83109904643431	2.91111370072763	2.78151409727107	3.24631058312393	0.789879328390789	0.297675870061433	0.694429857818433
Merged-chr1-37496199-4	chr1	37495698	37496698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290801, intron 2 of 14)	intron (NM_001290801, intron 2 of 14)	-7593.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	7.15669993658049	7.38701821496032	6.96630744904809	6.95496357825361	7.54422167656318	7.26892682373121	0.144352574945616	0.609007662341239	0.885053989692691
Merged-chr12-79089570-4	chr12	79089041	79090041	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029988, exon 1 of 4)	exon (NM_029988, exon 1 of 4)	129.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	4.12921306742615	3.953320148809	4.00622985360021	3.7498291516713	3.63686591433296	3.66804641464461	-1.13801296135981	0.0303147623417148	0.210375113245648
Merged-chr13-74808314-1	chr13	74807814	74808814	+	1000.0	f1_balb.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-354.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	6.58179652014808	6.62143808001299	6.63255044700674	6.56017192815957	6.48482368685098	6.57476537991768	-0.118143309795568	0.644427177671214	0.900210434145893
Merged-chr8-56328399-4	chr8	56327901	56328901	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33849.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.0369720787794	3.66055816120125	3.56458966333707	3.74205823521426	3.64524101657911	3.7998524692837	-0.167600011896879	0.766749969473009	0.942573703853445
Merged-chr19-5291730-3	chr19	5291222	5292222	+	802.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030109, intron 4 of 20)	intron (NM_030109, intron 4 of 20)	3733.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	4.64045975157466	4.4901616924173	4.97712317947557	4.66183871443469	4.45132500767292	4.94253046677315	-0.0431175349061997	0.923027405751221	0.982641560616013
Merged-chr10-94521103-2	chr10	94520603	94521603	+	988.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	6246.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.76690895310012	5.33768197209757	5.13756908864995	5.47305202167392	5.60936125390825	5.01078392037186	-0.0961336008024896	0.812330167078237	0.955553570095744
Merged-chr5-115272070-3	chr5	115271474	115272474	+	865.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302449, intron 1 of 16)	MIRc|SINE|MIR	921.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	5.86012690578365	6.05883972289506	5.72589507131924	5.8710292402406	5.77992417898006	6.24008189950605	0.122792688884253	0.705932835695235	0.922834459892351
Merged-chr10-60262581-4	chr10	60262064	60263064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15064.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.25493846857814	7.48195669346884	6.85775115674086	6.97934514277007	7.21614812432138	6.68454056425156	-0.367137249828355	0.216123993677951	0.609553034390023
Merged-chr7-80501101-4	chr7	80500597	80501597	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	33901.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	5.22247012640308	4.85867581707276	4.88143322720635	4.91678498138762	4.90419431268646	4.47598537010442	-0.462659190933327	0.275969672316951	0.673355880502019
Merged-chr19-10863699-2	chr19	10863199	10864199	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 5 of 10)	intron (NM_133804, intron 5 of 10)	6080.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	2.04164435957166	2.09205098349248	2.20688488731541	2.26368631021149	2.05738308512044	2.34659678645103	0.804110476658317	0.371859008049033	1
Merged-chr13-17795335-1	chr13	17794835	17795835	+	676.0	f0_balb.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	9762.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	3.15093069134132	3.07100095258413	3.05253400332812	3.12014190229578	3.33938233948759	3.24344409280941	0.625536847890223	0.330875868435381	0.722226411767471
Merged-chr10-94558472-2	chr10	94557972	94558972	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	B2_Mm2|SINE|B2	7552.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.07492913016323	3.05064069833059	3.25411956529929	2.95246059147343	3.05899967456639	2.98082212082716	-0.557903551728778	0.403270713877372	0.778715305540499
Merged-chr17-33941238-2	chr17	33940768	33941768	+	913.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185182)	promoter-TSS (NM_001185182)	545.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	5.73100525278144	5.70215264782799	5.86561960839677	5.67065231395068	5.494205004334	5.70447247877245	-0.265060880913577	0.401222864599846	0.777352367281159
Merged-chr12-85381819-4	chr12	85381315	85382315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7098.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.2094155439719	7.00970051282212	6.92567204677412	6.69448346883465	6.64360271159104	6.99744404890457	-0.431443629509224	0.101497031706052	0.424945406772526
Merged-chr1-74238331-4	chr1	74237826	74238826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1809.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	6.48534324684077	6.2014378485632	6.3140799425358	6.6911979682874	6.73074769798741	6.87235788147581	0.676831308506352	0.0120729316084586	0.114754911272175
Merged-chr15-89176339-1	chr15	89175839	89176839	+	541.0	f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-2388.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.22316038416071	5.21089999496517	5.78364191679191	5.73611709922974	5.96834692846061	5.79665270346084	0.788633295972424	0.0268380770196122	0.195063101842734
Merged-chr17-26243768-4	chr17	26243251	26244251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	491.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	8.14343737986197	7.76979822977001	7.80046515554437	8.11451890926758	8.44424921487242	7.8567561948899	0.353774301437793	0.176738061788959	0.557257318883504
Merged-chr9-56258583-4	chr9	56258053	56259053	+	817.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97483.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	7.24529680097982	7.63244285071794	7.10142853684997	7.94580371106135	8.11221086809196	7.49757027130916	0.767286222787028	0.00699932880604776	0.078122086021948
Merged-chr17-35261927-2	chr17	35261474	35262474	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	6.0813363816908	5.78884536246886	5.83492003805183	5.39442591095911	6.06810719358849	6.10076993652209	-0.0273399027531126	0.939160590642378	0.986609421918463
Merged-chr7-99144857-1	chr7	99144357	99145357	+	636.0	f1_balb.idr	Intergenic	Intergenic	-3713.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.76566029748488	4.68744105657871	4.86875796945355	4.83201017083438	4.94054464811593	5.03786258077005	0.372817855835354	0.335321954303844	0.725448354793538
Merged-chr9-65718366-4	chr9	65717854	65718854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 3 of 9)	intron (NM_172536, intron 3 of 9)	41806.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.06925618496199	4.92057671704355	5.00696721272137	4.86331962097021	4.7942996228473	4.81524542018939	-0.388885861881895	0.304651076587054	0.701027724333949
Merged-chr5-32744786-4	chr5	32744280	32745280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	1562.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	6.32853368692328	6.02732361245026	6.12225808089654	6.1689702064469	6.06200296130168	6.20383234126118	-0.0445095301391932	0.878215565761992	0.971842464414451
Merged-chr11-50259823-3	chr11	50259325	50260325	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 4 of 4)	intron (NM_175334, intron 4 of 4)	-21293.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	3.80338535913797	3.42451684381088	3.70495520973033	3.97526879120566	3.84756546476457	3.49242239486219	0.456661177679331	0.43871157140796	0.800720144919925
Merged-chr5-18009342-4	chr5	18008820	18009820	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	46750.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	4.70013588354537	4.68979027736855	4.36408127901569	4.90503325894456	4.99598500783484	4.7461488942562	0.660294580390775	0.114711641084395	0.452186398382538
Merged-chr8-46163668-4	chr8	46163160	46164160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357215)	promoter-TSS (NM_001357215)	9.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	6.0460715503331	6.29043018619719	6.03566198328637	6.12343059919472	6.00134612330242	6.14072115984202	-0.0864434026963311	0.767071896035445	0.942573703853445
Merged-chr1-88302675-2	chr1	88302175	88303175	+	589.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4037.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.50510661287676	3.99609457835689	3.8500473850747	3.51112585842718	3.46347992041566	4.26343089730748	-0.00442834081077338	0.994518270960343	0.998946345565713
Merged-chr15-102193036-2	chr15	102192536	102193536	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359128, intron 3 of 15)	intron (NM_001359128, intron 3 of 15)	-3993.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	4.3599900088396	4.73011813078868	5.06205345673777	4.41356090747251	4.01399404587817	4.87421564967713	-0.635508311940735	0.22908549293275	0.62456536110314
Merged-chr11-98777028-4	chr11	98776519	98777519	+	810.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1642.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	7.72713120813673	7.6009384136837	7.5225725141303	7.61799628944464	7.97530724880004	7.81642842519247	0.277192799599278	0.236519626753663	0.632745673713476
Merged-chr1-184573619-3	chr1	184573082	184574082	+	669.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15891.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.36229815071788	3.35599743189338	3.44787972065512	3.36095663950083	3.35065197331521	3.3531116601776	-0.123419516454261	0.834551735326677	0.961319929864283
Merged-chr5-30908546-2	chr5	30908046	30909046	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-758.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	3.94765447172601	4.03909868942322	4.14863995124363	4.2257014345372	4.05806739736395	4.30419992878201	0.429078764918494	0.372289854973674	0.75613031608614
Merged-chr7-27450784-2	chr7	27450255	27451255	+	854.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	MLTR14|LTR|ERV1	-1663.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	5.2085994515121	5.59978085034223	5.8371173404299	6.11188014956346	6.28077030860985	5.94674900668816	1.00506546762109	0.00335320964189963	0.0457100045680184
Merged-chr8-75087360-2	chr8	75086860	75087860	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6258.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.15425673939527	5.17663327881141	5.48774977230798	5.30902133680171	5.2314491185578	5.37995057151968	0.066671404480525	0.850766444872527	0.964981271430729
Merged-chr17-57341757-4	chr17	57341262	57342262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16924.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.9325007478551	6.41725626170423	6.8875768982283	6.87725882864788	7.08505695890912	7.11573372271724	0.411687194138021	0.14313371388797	0.50502227934974
Merged-chr2-27745016-3	chr2	27744518	27745518	+	972.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34435.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.53945039733756	5.70575694770638	5.83693280704739	5.39433084379383	5.60933872708361	5.72792946304415	-0.208703353066561	0.527668274933768	0.850108008834301
Merged-chr18-32352819-4	chr18	32352322	32353322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-24395.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.75601022231633	5.65576917717101	5.36540937464015	5.95794110639062	6.10176257276686	5.67814471315312	0.577359307468514	0.0850990195646683	0.386252608791229
Merged-chr4-3776766-9	chr4	3776252	3777252	+	811.9198610000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	58903.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.89440624224007	3.7471803011689	4.1677497616028	3.8141717109716	3.88180380325484	4.23417959841829	0.12716763094616	0.812192950994656	0.955516368820518
Merged-chr4-117251964-4	chr4	117251506	117252506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285812)	promoter-TSS (NM_001285812)	55.0	NM_001285815	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	4.66971308074435	4.22626263241545	4.31519810074914	4.50853754823226	4.2947965357934	4.5962856183996	0.105176527581059	0.82126192537939	0.957942312428027
Merged-chr19-5800255-7	chr19	5799734	5800734	+	957.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	2438.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.44879154656318	7.32743209639444	6.62767684983301	7.55066245133932	7.51776244949042	7.20830463021795	0.35974783313422	0.239377887579519	0.63628147424344
Merged-chr13-9767566-3	chr13	9767085	9768085	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2264.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.46812447077528	3.52326262813214	3.49479995054454	3.7494307137798	3.70443842945729	3.97019270964011	1.06937644263314	0.0549793244220412	0.301265698156681
Merged-chr3-94581416-3	chr3	94580917	94581917	+	868.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	1299.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	3.87941077234538	3.7387004257222	3.76536689178828	3.7968442961914	3.52157069300759	3.62221322399727	-0.495118345554748	0.365274388654293	0.750422106947654
Merged-chr9-114933997-4	chr9	114933490	114934490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-3.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	5.20284888438904	5.271760390929	5.20852261669657	5.67238122252285	5.39925109497043	5.2049336071482	0.42714633787655	0.229806806713356	0.625507516290642
Merged-chr1-97336385-2	chr1	97335885	97336885	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-208082.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	2.67395087015072	2.96379426482238	2.83471813598378	2.60759481097067	2.64788255928674	2.78625547701265	-0.803834339059719	0.284872003761908	0.682472350829806
Merged-chr18-21000432-3	chr18	20999943	21000943	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303005)	promoter-TSS (NM_001303005)	-857.0	NM_019706	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	3.6575060920976	3.77671565707202	3.54509843593662	3.88766133074289	3.79860874832628	3.61775736885155	0.357874440882088	0.516246661312878	0.844051513295388
Merged-chr3-68708871-2	chr3	68708371	68709371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	17447.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	4.55493889854744	4.55247363696496	4.53829259079111	4.5365816931282	4.61507612228821	4.6454168001821	0.120950817402901	0.769334119278136	0.943113227015368
Merged-chr4-62283590-4	chr4	62283063	62284063	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2866.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	6.81066052513014	6.96097693233253	6.91796547328303	7.39601518443594	7.41737606330458	7.46434950364162	0.792392756314743	0.00069757125884056	0.013634911809625
Merged-chr5-90366556-4	chr5	90366063	90367063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	-378.0	NM_198010	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	8.74175599195567	8.65900785904526	8.25553215127663	8.70086620849153	8.32702707776922	8.36771857960844	-0.134917966346818	0.582368040620425	0.873702353685426
Merged-chr7-80182622-2	chr7	80182122	80183122	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4219.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.58505562040226	3.93823626505325	3.63712313179177	4.36615872116297	4.6023269774278	4.541109034656	2.2342787597127	3.96746498211594e-05	0.00130145666532861
Merged-chr2-52513856-4	chr2	52513364	52514364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	44747.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	6.288092832428	6.0510947671745	6.37988878325122	5.8256282624265	5.94079567411615	6.27378363351508	-0.380764058505413	0.219077134431427	0.613224645184221
Merged-chr8-79680692-4	chr8	79680238	79681238	+	883.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31002.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	4.02561666734812	4.24988644699845	4.20710404209803	4.01725561195667	4.21148122345181	4.52174494739859	0.260343608657223	0.595683487042787	0.879596630230779
Merged-chr2-150831239-4	chr2	150830726	150831726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11344.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.79625832430192	6.83300365007414	6.88059901862514	6.92276579466697	6.89051054964302	6.88141438048845	0.0988892260582149	0.68316451711307	0.91523316791368
Merged-chr18-38297466-4	chr18	38296955	38297955	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164621, intron 1 of 9)	MIR|SINE|MIR	650.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	7.18545393785248	7.60206686433927	6.96603841819778	6.96388821021728	7.2504420443901	6.84359260523745	-0.373157289578596	0.199405792938149	0.587811571148104
Merged-chr16-23609901-4	chr16	23609406	23610406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-13.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	8.15081586591155	8.38906194686327	7.84468640111494	8.30001334962931	8.8140895249488	7.9515110524502	0.365649863437043	0.218335084416615	0.612472797118277
Merged-chr13-24801277-5	chr13	24800839	24801839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-318.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	8.28944582557219	8.02801145291479	7.96991687191982	8.11806501719104	8.0754487882231	7.97224081771903	-0.0689179796499776	0.756455732988025	0.939624936081835
Merged-chr8-72239979-5	chr8	72239428	72240428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007456)	promoter-TSS (NM_007456)	-90.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	6.81694662173409	7.0520839913542	6.72948066523592	6.95062379281126	7.04296894943134	7.08814542764961	0.223220859860176	0.378710937907295	0.761227648115522
Merged-chr17-26690548-2	chr17	26690048	26691048	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	14152.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	3.46690298344615	3.55046102794164	3.53132467604141	3.55352024837896	3.3353620226023	3.43716716832608	-0.275768944153639	0.634532963855101	0.896350313439852
Merged-chr14-56875937-6	chr14	56875416	56876416	+	913.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-10687.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	4.61142600774855	4.57229041615753	4.66119144841682	4.78236818678392	4.56711827493228	4.64744051120394	0.127848292925844	0.754932380335606	0.939180610396804
Merged-chr3-27195370-4	chr3	27194895	27195895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	12391.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.88518508528697	6.19198613773897	5.87565092672924	5.4737230726173	5.55136854989491	5.59558127710257	-0.83325190304024	0.00887185419088979	0.092635116515944
Merged-chr19-34507359-2	chr19	34506859	34507859	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 5 of 9)	intron (NM_001111100, intron 5 of 9)	20115.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	3.30136279076297	3.1055309293325	3.45389782670049	3.26903822707738	3.17322694566108	3.1962853084416	-0.312422898765491	0.622994907021733	0.891251075175817
Merged-chr4-155670384-2	chr4	155669884	155670884	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9D|LTR|ERVK	-1130.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	4.51189278958763	4.71466521839271	4.46920403626032	4.45384880895323	4.5078714749973	4.53652360927181	-0.19071201980959	0.653969105528305	0.903623868780893
Merged-chr11-119079269-4	chr11	119078770	119079770	+	778.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007625, exon 5 of 5)	3' UTR (NM_007625, exon 5 of 5)	6967.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	4.77691975928643	4.72514561731928	4.86967870558166	4.75882848396209	4.5136163194802	4.4519087437046	-0.480158836124922	0.246775533104028	0.643905401691724
Merged-chr1-180852384-2	chr1	180851884	180852884	+	675.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145943, intron 1 of 6)	B1_Mm|SINE|Alu	1233.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	3.25004194098377	3.32273113463922	3.68196287059042	3.4786713245036	3.58656561842155	3.54859931970735	0.433613632279614	0.472008939509019	0.820417342888691
Merged-chr10-19942106-4	chr10	19941624	19942624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	7598.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.72353352126284	6.43758297853179	6.46658370717105	5.99447312990039	6.04818150903274	6.55988775243623	-0.553689532377145	0.0745530465156044	0.35930552530961
Merged-chr7-101584491-3	chr7	101583987	101584987	+	872.4111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3326.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	4.52115841005756	4.40711426360355	4.4951849473124	5.84716418597155	5.82757750096446	5.85089837004737	2.9017550476978	3.32464134196733e-14	8.21201435576428e-12
Merged-chr6-50374873-3	chr6	50374355	50375355	+	600.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	7982.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	3.56980989664455	3.70540069593916	3.6428584579421	4.01495783364907	4.18174293146246	3.97772638503501	1.35579892655853	0.0100230860340458	0.100562831291302
Merged-chr1-165237023-4	chr1	165236522	165237522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145513)	promoter-TSS (NM_145513)	-62.0	NM_001357410	226591.0	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	7.21475115150715	7.51484798672375	7.33105776834684	7.57993305111147	7.65434790422753	7.25977540607914	0.22863657915276	0.361375792995205	0.747285684599917
Merged-chr5-32464861-3	chr5	32464360	32465360	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	5890.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	3.50072478056841	3.56577230547319	3.64983920139601	3.42278461322795	3.64599665418967	3.61596117817504	-0.0104877011235236	0.985228544996649	0.996873682039026
Merged-chr11-101465165-4	chr11	101464664	101465664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1035.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	7.66995640415684	7.78201471631434	7.38128228834093	7.10437665143184	7.10323535333696	6.33776143313797	-1.06358962710191	0.000683100849805886	0.0134308732303044
Merged-chr6-49074866-4	chr6	49074391	49075391	+	838.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029353, intron 1 of 3)	PB1D11|SINE|Alu	1096.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	5.31049402379439	5.24084298470972	5.24762305896531	5.67741799780575	5.6370243819784	5.27883713067486	0.555509222547777	0.108141967113686	0.439299334771121
Merged-chr17-72944138-4	chr17	72943622	72944622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	25817.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.95110027166857	5.08436178605518	5.25808436145305	5.10405071149186	5.37775843063545	5.32125561345594	0.370031931132144	0.310801759017429	0.706049818835924
Merged-chr4-75277632-1	chr4	75277132	75278132	+	545.0	f1_c57bl6.idr	3' UTR (NM_025849, exon 2 of 2)	3' UTR (NM_025849, exon 2 of 2)	660.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	6.65600446872476	6.60531662846537	6.85061643934922	6.86476422061585	6.93367005399085	7.0433883189388	0.381878229512027	0.131363891743756	0.4845480820797
Merged-chr12-55494260-2	chr12	55493760	55494760	+	827.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1613.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.87456108105837	6.00191516867129	6.25636549439527	6.24395794263687	6.12010083750096	6.57624894041549	0.460015960935276	0.138812282478783	0.497765344567168
Merged-chr12-104752789-2	chr12	104752289	104753289	+	667.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-837.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	5.15807756821905	5.42230430001378	5.37475940457635	5.26028996697468	4.9645264439551	5.22192879214294	-0.355318763540619	0.329001443715581	0.721105303873632
Merged-chr13-58687838-4	chr13	58687309	58688309	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	74502.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	4.58504267428304	4.54899039221873	4.98781225255468	4.53045460733575	4.66392107993359	4.66177500779867	-0.211009540600841	0.622214534894753	0.891009890820853
Merged-chr16-78266107-2	chr16	78265607	78266607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10653.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.7975043845973	4.85842992045688	4.33734039596716	4.71297630568167	4.71867134283238	4.71943138948151	0.0425001134358986	0.921817497083213	0.982542868764899
Merged-chr6-116266816-4	chr6	116266332	116267332	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290339, intron 1 of 6)	L1MC1|LINE|L1	300.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	6.52541142153766	6.24446301835074	5.83925345229072	6.41270925540994	6.41024560405268	5.90239904088391	0.0465218158651493	0.891962213277825	0.974942585822634
Merged-chr19-6910111-4	chr19	6909601	6910601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	5.0	NM_012021	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	9.10134683862243	9.22481849055015	8.70615510887787	8.92861906183358	9.20299684372098	8.71160144628727	-0.0892736715946823	0.719618114315303	0.927923632102585
Merged-chr7-68739191-4	chr7	68738705	68739705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001042592, exon 8 of 8)	3' UTR (NM_001042592, exon 8 of 8)	10033.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	5.61202409648547	5.7436221606526	5.90096728216186	5.87679665898967	5.82155350916034	6.23282686040758	0.405916175024858	0.207006370900331	0.597847562037927
Merged-chr5-53588619-4	chr5	53588113	53589113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	-1733.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	6.34096237292044	6.20642077928792	5.93915869454601	5.87129236189208	5.82625127476658	5.79690375753679	-0.606720185753767	0.0450205734063516	0.267614792970118
Merged-chr8-25615972-3	chr8	25615484	25616484	+	660.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	13700.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	3.49028383198664	3.26785958756829	3.73037354091835	3.31163627760964	3.14777049916468	3.22049434719631	-1.08823717382715	0.0876587422159022	0.392705368375557
Merged-chr15-59845383-5	chr15	59844887	59845887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50428.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.10461453354075	4.25928205962673	4.03747505670175	3.51814590917711	3.65457096483833	3.80815353035486	-1.53705107996832	0.00415570092855992	0.053428239008593
Merged-chr17-27634807-2	chr17	27634307	27635307	+	717.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025963, intron 1 of 5)	intron (NM_025963, intron 1 of 5)	435.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	6.20762490791745	6.31052327644417	6.41162544192843	6.40343751440768	6.19320298966055	6.17606061826568	-0.0743298240418164	0.791083525881165	0.949694766870106
Merged-chr4-141500770-4	chr4	141500265	141501265	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	37832.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	4.13599991930567	3.90255706621285	4.10724885912846	4.48674943885154	4.74918835512075	4.73041542309414	1.61984365157617	0.000471260693729051	0.0100416542391311
Merged-chr6-122595847-4	chr6	122595355	122596355	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	6589.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	5.49827168110313	5.05416066195542	5.58351562890031	5.58916970628738	5.96893774825445	6.1085028974637	0.947286572486939	0.00952391994525631	0.0971633191350344
Merged-chr5-8082891-3	chr5	8082387	8083387	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310440, intron 29 of 30)	intron (NM_001310440, intron 29 of 30)	26345.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	3.23735235617005	3.09982292087588	3.30680440058917	3.09270256259635	3.06062352413044	2.96916019806944	-0.743813885351068	0.258523355498686	0.656089650298431
Merged-chr3-37342513-3	chr3	37342042	37343042	+	706.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6111.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	3.41947979224325	3.79770475880312	3.67782576077121	3.21299080727511	3.46379431282842	3.64627902203255	-0.68927872076009	0.263879285628788	0.661864470315546
Merged-chr9-83546508-4	chr9	83546006	83547006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	7.09754051937805	6.79426881279109	6.62904953889074	6.6289756826509	6.52065958155851	6.21804009812234	-0.609659008492287	0.0361516679959362	0.233893786688894
Merged-chr6-145214204-3	chr6	145213696	145214696	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163628, intron 1 of 2)	URR1A|DNA|hAT-Charlie	3049.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	4.30965791876674	4.20599077296581	4.40020135010962	4.34925083956187	4.48160693877059	4.42456122148658	0.314344825861452	0.477560893828713	0.823237639056184
Merged-chr14-8098245-4	chr14	8097768	8098768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178279)	promoter-TSS (NM_178279)	57.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	7.21631821070717	7.01152795975869	6.70676542383159	7.1548246847394	6.62090632455002	7.13581049352972	-0.023293871902383	0.937504076105607	0.986057836872162
Merged-chr1-133033977-7	chr1	133033388	133034388	+	944.7698359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3301.0	NM_001302802	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	5.93465331668207	6.29788073192722	5.97650740155524	5.84159420555315	5.78224787603238	5.73599460349389	-0.522502917341904	0.0919065468186905	0.403789004049295
Merged-chr13-60602585-4	chr13	60602052	60603052	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 2 of 27)	exon (NM_001285917, exon 2 of 27)	341.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.64385269849349	7.8850689468745	8.05423573270034	7.35014675370033	7.50584049592484	7.35552873397963	-0.664072115504982	0.0056978534073336	0.0671426287689467
Merged-chr11-6519207-2	chr11	6518738	6519738	+	877.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1720.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	4.04337141883684	3.94486204608616	3.89331363646038	4.11028291879835	4.07613752139905	4.15800744999143	0.430713010943571	0.375348221820026	0.758646622209238
Merged-chr5-33629771-4	chr5	33629302	33630302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-167.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	7.19332650928858	7.45018869191926	7.03540736248816	7.02069309749137	7.20235821848065	7.14555304522646	-0.17928602878737	0.47933765812495	0.824178515809639
Merged-chr11-3162662-4	chr11	3162131	3163131	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30832.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.49164448266725	6.78173423629977	6.78985021620841	5.09906726802139	4.8831586668242	7.23960996772246	-0.634073714483688	0.607205866725944	0.884448083779426
Merged-chr5-136568103-4	chr5	136567582	136568582	+	788.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-592.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	5.07607019118156	5.30390831072164	4.95358672641106	5.23958250061926	5.35496030452615	5.23250743949576	0.307019015763422	0.399141514575996	0.775688105708038
Merged-chr11-69008453-4	chr11	69007919	69008919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159519)	promoter-TSS (NM_001159519)	41.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	5.90194019331755	5.72937769335117	5.70429173931425	5.77778731829729	5.71854366207015	5.44511497585887	-0.219214989314964	0.496539148553275	0.833068443851617
Merged-chr11-114989948-4	chr11	114989440	114990440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-54.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	7.22173622079899	7.26430288665612	6.96132515876209	7.22041038734985	7.56672824874832	7.43383521315019	0.377811733329353	0.133261171603483	0.48836948380917
Merged-chr18-62088700-2	chr18	62088200	62089200	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91281.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.16256587811764	5.19423884999609	5.22254495529528	4.75742518858018	5.06886773176315	4.9839796861369	-0.514242850825866	0.16885655210321	0.545526080537875
Merged-chr5-140608132-6	chr5	140607708	140608708	+	979.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	867.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.82657198336413	7.08075877310118	7.04756658682467	7.16832162926393	7.01653854200193	6.82242305435472	0.0416829132983455	0.871217440430837	0.970222087171093
Merged-chr2-124928097-4	chr2	124927608	124928608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140019.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	7.39378410792829	7.78470142133003	7.02857873743505	6.90173446504794	7.11126290422726	6.94365238490648	-0.683254647561604	0.0177846137598263	0.14945367057597
Merged-chr13-58487427-4	chr13	58486941	58487941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84098.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.49304806886623	6.35103792860755	6.53158540531614	6.44962562661464	6.60303368462678	6.50343898461008	0.108798081412835	0.682099151450706	0.914935862547256
Merged-chr2-170217710-4	chr2	170217216	170218216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75041.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.99666070068744	4.83023607496031	4.93803343904285	5.07147425428166	5.23108403280157	5.14276723406787	0.49252435946788	0.181023383946067	0.563277129927242
Merged-chr15-59080807-2	chr15	59080307	59081307	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	1219.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.60921423333563	5.5954220655701	5.45588068902527	4.72156421185937	4.74523847247628	4.62035225117941	-1.80168969319102	1.49138726346428e-06	7.69345018092597e-05
Merged-chr15-93272763-2	chr15	93272263	93273263	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	2416.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	2.95704912732288	2.90294714798211	2.90264494416315	2.67447633144811	2.71142905032891	2.85476134927072	-0.914421490321036	0.203874143872029	0.594065140719514
Merged-chr2-62686109-2	chr2	62685609	62686609	+	720.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 4 of 7)	intron (NM_145523, intron 4 of 7)	21782.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	3.70694824438938	4.14220876400575	3.57201358743902	4.15014165509493	3.8192909556804	4.11956393869933	0.583732003318837	0.311803006059126	0.706723622367304
Merged-chr5-23751391-4	chr5	23750860	23751860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178403, intron 9 of 15)	intron (NM_178403, intron 9 of 15)	28303.0	NM_001289781	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	4.15941691867408	4.01344062867215	4.37418602920864	3.78403949963966	3.45098422998926	3.70288644605494	-1.72086276151824	0.00190092960247382	0.0297177449137803
Merged-chr11-116029495-4	chr11	116028994	116029994	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	-822.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	7.03694223056195	7.14458005520085	7.17797361799193	7.18635057142173	7.78513960238969	7.3953105404957	0.548293953100836	0.0408234158635417	0.251970659825335
Merged-chr7-45405907-2	chr7	45405407	45406407	+	783.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010596)	promoter-TSS (NM_010596)	-53.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	2.29378668452448	2.36287633421728	2.31925672853575	2.39026335720824	2.28862804535686	2.58396974102993	0.608344098892266	0.465551512500579	1
Merged-chr5-33921200-3	chr5	33920770	33921770	+	805.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011914, intron 2 of 10)	intron (NM_011914, intron 2 of 10)	14988.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	2.98722500040798	2.9937361626201	3.0292260615208	2.9821886625459	2.82611654805024	3.10111452635887	-0.163252021868277	0.810354790179568	0.955030259072015
Merged-chr7-99050096-4	chr7	99049564	99050564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	91080.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.06709900737672	6.53465961480933	6.26521532405163	6.31358476410751	6.54691602014716	6.17031538423949	-0.506554232935531	0.127696320902796	0.477758789104309
Merged-chr10-12940772-1	chr10	12940272	12941272	+	886.0	f0_balb.idr	3' UTR (NM_029075, exon 3 of 3)	3' UTR (NM_029075, exon 3 of 3)	-17645.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	2.76809969235024	2.62863698470275	2.78933354502601	2.60102140039089	2.29059972580089	2.68026558363985	-1.15002001322343	0.174211738343712	1
Merged-chr3-60538728-4	chr3	60538222	60539222	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	37543.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.88154580792996	4.73002230115728	4.67655863103861	5.26227851352404	5.41386492788747	5.0953677413179	1.07062997180621	0.00497307791605195	0.0609964426944061
Merged-chr14-31685762-4	chr14	31685231	31686231	+	844.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	44674.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	3.47217431477461	3.35906477198359	3.53703019543788	3.59428529628983	3.51380001071059	3.44296063096422	0.245374917172977	0.670248903310151	0.910025735228204
Merged-chr2-121448405-4	chr2	121447898	121448898	+	767.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-800.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	7.80125925507889	7.90621164261303	7.77021472717276	7.62482139247511	7.82929180655858	7.67655728637198	-0.161745933075233	0.463250032349321	0.815738867198321
Merged-chr1-86470704-4	chr1	86470217	86471217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44388.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.97744983381699	3.78605478601911	3.70672251741979	3.94490323764711	3.97815760502532	4.2158859474914	0.641731917158018	0.217689127028607	0.611656200779633
Merged-chr5-38509014-4	chr5	38508521	38509521	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-6869.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	3.66898080847521	4.10361683118738	4.15332601326286	4.11625194528774	4.01885412012996	3.93668697865079	0.112923391857183	0.830645593225013	0.960367055687527
Merged-chr7-27929490-4	chr7	27928983	27929983	+	960.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028538)	promoter-TSS (NM_028538)	-53.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	5.20112465359646	5.85724613028366	5.57893327941751	5.55218876704943	5.43706551018549	5.47026757729785	-0.175443183798561	0.632774977012726	0.89568906384386
Merged-chr10-121473839-4	chr10	121473342	121474342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	2408.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.68199102866961	6.61808410422287	6.24724111085774	6.4644494236507	6.49496075049056	6.12826608096051	-0.253256446322755	0.393135070146444	0.771490835516741
Merged-chr7-120831311-4	chr7	120830809	120831809	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11522.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.86025419587343	6.09506293611997	6.06344525757161	6.09476103702077	5.84217073272765	5.89251292649104	-0.107894379553872	0.721487780190468	0.928503945058713
Merged-chr11-83632919-2	chr11	83632419	83633419	+	966.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16459.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	2.66042830458153	2.65735242607267	3.13626228841934	2.90845963961245	2.66934863970109	2.68068201209383	-0.37573448668995	0.629603587095493	0.894364606069187
Merged-chr8-94177802-3	chr8	94177283	94178283	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	4.12562610234246	3.96189573378694	3.98990622329267	3.93994304126815	4.05439313936148	4.10629531320364	0.0123892455901355	0.979802932892732	0.995332945386782
Merged-chr5-91302935-2	chr5	91302435	91303435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19859.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	2.5726140768275	2.58946197762199	2.65548253566863	2.53183809884782	2.4271834396925	2.47514146186914	-0.763794188648655	0.329333113899097	1
Merged-chr9-61513585-3	chr9	61513018	61514018	+	958.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	141152.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.3355617539317	4.35672961005285	4.23252866169374	3.7580255003335	3.81824934934447	3.80606480113723	-1.55133551015918	0.00196491673400521	0.0305373163248236
Merged-chr7-35086782-4	chr7	35086271	35087271	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30205.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.38753489862082	5.25760253722726	4.49675890327025	4.4782364257319	4.63184887679938	4.52005282971375	-1.26659788419441	0.00664189138114492	0.0751814036243104
Merged-chr7-44125319-2	chr7	44124819	44125819	+	877.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-11971.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	3.30449192190818	3.29864815760827	3.08954494855835	3.30108341965587	3.15284546715764	3.6058001381085	0.477980746166942	0.463688035106451	0.816038286358001
Merged-chr5-107901008-1	chr5	107900508	107901508	+	1000.0	f1_balb.idr	intron (NM_016980, intron 1 of 7)	intron (NM_016980, intron 1 of 7)	480.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	6.73900230555559	7.24156329356531	7.04524154762884	7.15193222290653	7.09658586028281	6.64885729966839	-0.0504231661773888	0.862112743054863	0.967996224966109
Merged-chr11-74497499-3	chr11	74497001	74498001	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	92657.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.40355397304491	5.18397529117352	5.40219884104122	5.64386000016879	5.32129177436349	5.40517750910174	0.258746128340013	0.457797719066412	0.812540681905075
Merged-chr15-50803639-3	chr15	50803139	50804139	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	85410.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.95809504204713	3.98861014673068	3.97516318142586	3.9489781428799	3.6842459934519	4.09023755805012	-0.202837622097891	0.69550561600866	0.919289041383579
Merged-chr4-155202050-2	chr4	155201550	155202550	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	20485.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.43162203887712	5.3054404732247	5.38874454706543	5.51808236798485	5.62683960419661	5.62362218689244	0.412606608415852	0.206208264343142	0.596809057329073
Merged-chr2-3961590-4	chr2	3961086	3962086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-56097.0	NM_001347086	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.12006894292929	4.11425268371539	4.53744495286234	4.16207071895527	4.29662947047569	4.71069493298482	0.36639106844396	0.461186217986769	0.814967673163359
Merged-chr4-133240713-2	chr4	133240225	133241225	+	889.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016693)	promoter-TSS (NM_016693)	-93.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	2.63496397392302	2.91011669920348	2.87707180938066	3.22449381529458	3.04342425000708	3.01341905107217	1.37361947036734	0.0595897987152878	0.315959215669513
Merged-chr6-113245763-4	chr6	113245264	113246264	+	699.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155434, intron 2 of 17)	intron (NR_155434, intron 2 of 17)	7921.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	3.72455374039723	3.66111173328224	4.16910127099252	4.05120858737162	3.99144948164756	3.81151884071315	0.302053698139159	0.579989890354687	0.872724915243921
Merged-chr7-101357024-4	chr7	101356529	101357529	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	8960.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.55398766039124	3.38969534788794	3.45844131723153	3.37009980762079	3.11326293291528	3.42019736387021	-0.661423356593569	0.283051396298562	0.681052009230547
Merged-chr12-100529420-4	chr12	100528913	100529913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8591.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.45563911952169	5.59221448529331	5.69159217073391	5.61336725886001	5.53899107789481	5.31809492872108	-0.139365665595953	0.675970164210695	0.912421384593547
Merged-chr10-20349670-4	chr10	20349162	20350162	+	889.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1843.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	5.00450935869827	4.8401781457605	4.85546719319441	4.91375290311136	5.03791103114475	5.0977253415943	0.243774812011051	0.517966472878562	0.844878739811797
Merged-chr9-106475118-2	chr9	106474625	106475625	+	646.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001311150, exon 3 of 11)	exon (NM_001311150, exon 3 of 11)	1824.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	2.9054451768041	2.88248767279844	2.96671581298076	2.86673865063544	2.63034187394699	2.79733468681093	-0.781762004138883	0.279719337370453	0.677383093273448
Merged-chr2-52995016-2	chr2	52994516	52995516	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	137148.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.05258956659264	2.91292351231905	3.06107381997893	2.91235757810995	2.7122998115526	3.07578252647409	-0.51500037559957	0.467921788476919	0.818205691164444
Merged-chr17-81658026-4	chr17	81657539	81658539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	80348.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.1172473823152	4.16425973406142	3.80061542069958	4.21891152845227	3.84223454279605	3.75991176007635	-0.250492136252533	0.643873937807962	0.899990653857957
Merged-chr3-54723600-2	chr3	54723100	54724100	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11764.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	5.09731748397889	5.08672731854667	5.51372237360633	5.05658288902853	4.41996860717505	5.11831735837224	-0.73440389078083	0.0972535992889279	0.415829701465976
Merged-chr10-13497339-4	chr10	13496842	13497842	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3686.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	3.64898240921337	3.46074068340175	3.56280364449206	3.54706058193386	3.43231590459047	3.46909943139399	-0.281004733991328	0.623144652666226	0.891286983395811
Merged-chr12-55443333-4	chr12	55442815	55443815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44490.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.11553324745648	3.80585716550572	3.73266828602108	3.91422234365174	3.91432219686774	3.85776316187785	-0.0170413022442935	0.974225830525199	0.994260005145451
Merged-chr14-52190871-1	chr14	52190371	52191371	+	698.0	f0_balb.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	6368.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	3.04966030246804	2.9092215967554	3.03673165916615	3.13068903488933	2.85943228901329	3.42647914891103	0.692742768627618	0.327865695736911	0.720032905876501
Merged-chr4-43454254-4	chr4	43453757	43454757	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007654, exon 2 of 9)	exon (NM_007654, exon 2 of 9)	369.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	6.15426060777767	6.09598725905572	6.59320010705726	6.1563334366178	6.41834446355911	6.30397491584188	0.0211520303243446	0.944767968530461	0.98786315338489
Merged-chr9-44379387-4	chr9	44378877	44379877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-113.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	8.25139219314037	8.2487886802788	7.81533643363877	7.94957411788094	8.20014215376794	7.4655371363207	-0.295323476406324	0.295803148281492	0.69268534495276
Merged-chr11-32644240-4	chr11	32643741	32644741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1686.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	7.87642714698182	7.93238550703195	7.4204311538024	7.86101861257342	8.1625375564502	7.46625162812948	0.144453578957613	0.613389172029123	0.887185353929309
Merged-chr12-17544775-4	chr12	17544257	17545257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-116.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	7.46454483439205	7.2425320271111	7.2494513878283	7.23815954804378	6.95626015199706	6.80310994767951	-0.46291601340058	0.0734139476720367	0.35604603167381
Merged-chr2-128122557-3	chr2	128122033	128123033	+	743.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 17 of 17)	intron (NM_028765, intron 17 of 17)	-3505.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.02903137140083	3.09371126405629	3.16586921782236	2.91988351535106	3.00213070759951	3.29104659926299	-0.0930085121298522	0.88987627903675	0.974313026039223
Merged-chr11-97719337-3	chr11	97718841	97719841	+	617.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054051, intron 9 of 9)	intron (NM_054051, intron 9 of 9)	15907.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	5.86330634357141	5.51885120106837	5.46453821750499	5.97007172564406	5.85436822365378	5.46539850897775	0.281672725152761	0.420256308507736	0.789521469804967
Merged-chr2-4651726-2	chr2	4651226	4652226	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026045, intron 1 of 9)	intron (NM_026045, intron 1 of 9)	409.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	5.35790892268769	5.94048112909452	5.83266702929978	5.85069904912574	5.90304360775491	5.7422731432867	0.186541044932697	0.586001858188491	0.875216158388641
Merged-chr14-17755202-2	chr14	17754702	17755702	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	94242.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.45688738901263	4.52115836790673	4.38549282389716	4.61710477093523	4.27835583260211	4.16763878191687	-0.220370211111673	0.631362357235004	0.895122791781359
Merged-chr14-32812622-4	chr14	32812125	32813125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 4 of 4)	intron (NM_001163616, intron 4 of 4)	-21337.0	NM_001164485	105511.0	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	4.27432471964003	3.98894890802666	4.24687470448563	3.8950746604155	4.0473980329726	3.98984516933014	-0.555106212809377	0.26248987422084	0.66048925903673
Merged-chr2-6477320-2	chr2	6476820	6477820	+	757.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	124584.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.10775322394829	4.10379672320522	3.86876083958898	4.11648476805933	3.9857239196728	3.83163842831334	-0.150324302524489	0.767034184839152	0.942573703853445
Merged-chr11-78328391-4	chr11	78327887	78328887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201406)	promoter-TSS (NM_201406)	-35.0	NM_201406	276846.0	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	6.21220803595664	6.75544810775137	6.2887664596415	6.51910415514835	6.61901253950977	6.24360074504183	0.0447000973212284	0.885884989416759	0.973636976161493
Merged-chr12-100021835-3	chr12	100021342	100022342	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	57343.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.4031285457752	5.4920087924762	5.53915488482192	5.1829290862458	5.12769077075735	5.27902540396482	-0.565858613397701	0.0964058029448149	0.413896808804095
Merged-chr16-11175702-4	chr16	11175212	11176212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	681.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	8.64076889626989	8.79995730447838	8.39793248278073	8.55774307012945	8.88106935539247	8.64820164802519	0.107368473979418	0.638224597407793	0.897399197342002
Merged-chr1-190910059-4	chr1	190909550	190910550	+	923.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	1720.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.29565262124916	6.64037915618037	6.54893325132023	6.07181426752794	6.10735220478213	6.08674515697606	-0.68518731535404	0.0161037583748092	0.139477623280018
Merged-chr15-62060829-2	chr15	62060329	62061329	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	21572.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.23513981707284	3.91898169885884	4.2035006594938	4.10146287008467	3.83104495041003	4.1362782045543	-0.295144614057303	0.559773925001743	0.86512447604019
Merged-chr4-132809872-4	chr4	132809325	132810325	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13461.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	5.87271237987597	5.63778630719334	6.3043037100163	6.03776416009173	6.28422979133419	6.06346455254823	0.316614945631741	0.34258073136273	0.731471837188352
Merged-chr11-61760730-4	chr11	61760271	61761271	+	795.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 1 of 11)	B3|SINE|B2	1317.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	5.14249228095127	5.42941772632398	5.15815228747914	5.40756046595703	5.48174066463564	5.15300464397635	0.216228390546271	0.549877488094835	0.86050509437616
Merged-chr2-38519099-2	chr2	38518599	38519599	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	7223.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	2.58974012371247	2.63036299509288	2.75386687128759	2.3656564250761	2.41026834449802	2.38691545963058	-1.68668388265245	0.0430452431885183	1
Merged-chr10-37234512-3	chr10	37234049	37235049	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95623.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.94130885793148	5.61532228701992	6.14103401017702	5.85399006614154	5.82798983362068	6.14075804790398	0.0586344638927897	0.858685826878827	0.966958496744305
Merged-chr1-180974580-4	chr1	180974075	180975075	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144794, exon 23 of 23)	3' UTR (NM_144794, exon 23 of 23)	32057.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.6154117846038	5.63687005658042	5.75510365034425	5.46651048190557	5.6840689032078	5.52046976099545	-0.182315774813736	0.571312256177244	0.869428183241799
Merged-chr16-10786561-4	chr16	10786066	10787066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	5.78704458834246	6.18616298105588	6.17093307991892	6.2011118660291	6.55580493066552	6.10125701798278	0.428603081138691	0.177654534248417	0.558706727133464
Merged-chr19-11111758-2	chr19	11111258	11112258	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 3 of 6)	LTR87|LTR|ERVL?	19120.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	3.16155143022255	3.35417745610169	3.67766487863301	3.3453919570174	3.30521201736522	3.60060899400357	0.0391324048575472	0.95081433721991	0.988501616477738
Merged-chr7-122693859-3	chr7	122693346	122694346	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	intron (NM_019430, intron 1 of 3)	22102.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	3.2138663674398	3.16314861546594	3.36613919416721	3.37319288989399	3.30203589557315	3.59263825794251	0.699246808637755	0.255920032220741	0.652867953552546
Merged-chr10-37261288-4	chr10	37260788	37261788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122362.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.99289376245595	5.98978258144459	5.96447967217434	5.75088949000875	5.98323813025976	6.02533678751461	-0.103533807576835	0.72830076125906	0.930478966998914
Merged-chr11-78344674-9	chr11	78344172	78345172	+	849.351868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313988)	promoter-TSS (NM_001313988)	-912.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	4.3029168501512	4.44076366570617	4.57818128487728	4.82896627581652	4.76680834042499	4.90732494190559	0.945045762935983	0.022787293069829	0.17611787866936
Merged-chr8-79399468-4	chr8	79398968	79399968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	0.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	7.74200311399997	7.60116057728139	7.54234860772529	7.48445079215113	7.53997307597249	7.63716502344294	-0.118995580450324	0.595569688797868	0.879549293510723
Merged-chr11-75150880-4	chr11	75150397	75151397	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	B4A|SINE|B4	17255.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.7881763455502	5.06013930764946	4.96483507746046	4.72309153654067	4.89058138443127	4.95907769107472	-0.185184727398465	0.635322243693922	0.896470397811433
Merged-chr3-107333191-4	chr3	107332700	107333700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	89.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	8.43217695001093	8.75989600943399	8.15642924014401	8.19177361980147	8.77400926533777	7.82979801475439	-0.196657899367471	0.527221757982329	0.84987926766232
Merged-chr11-95346501-2	chr11	95346001	95347001	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	9483.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	4.69012094662082	5.21311092347395	5.09008473086551	4.96541961965819	5.18195103063903	5.18681585487974	0.207376162603395	0.602721244071875	0.882397657327329
Merged-chr14-66296972-4	chr14	66296497	66297497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029979)	promoter-TSS (NM_029979)	-28.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	5.63362743241795	5.56801069946731	5.51309210013341	5.80907436554177	5.25872510534225	5.51782868306279	-0.0581693051231614	0.868356323804456	0.969642939011354
Merged-chr4-58986900-3	chr4	58986396	58987396	+	940.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	182.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	3.42377536689028	3.67940295792354	3.81681885426157	3.22074751632248	3.23951118066544	3.13037453410943	-1.74097967524808	0.00697439009981821	0.0779064372970431
Merged-chr1-91095523-4	chr1	91095021	91096021	+	860.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	42077.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.39256414460828	4.57770826169762	4.57357613336056	4.62707990872296	4.41568850895499	4.42932405198754	-0.0528261587821453	0.902491854952316	0.977534352809461
Merged-chr11-109495811-2	chr11	109495311	109496311	+	900.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361977, intron 1 of 10)	intron (NM_001361977, intron 1 of 10)	472.0	NM_001361977	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	2.96877235148597	2.89281910066291	2.75958512710738	3.00464531175654	3.1286854559495	3.0217151199433	0.828010933337119	0.236571643602636	0.632784278027777
Merged-chr7-28866982-3	chr7	28866473	28867473	+	784.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008496)	TTS (NM_008496)	2587.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	2.73742135702467	2.94696851315104	3.09056434873933	2.84423391069607	3.06519954338503	2.86756934642982	0.0249469036474544	0.972383307011495	0.993868590220018
Merged-chr10-21623907-1	chr10	21623407	21624407	+	560.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	30762.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	3.47057162066901	3.80912542408077	3.98567200460942	3.67785832259563	3.51379165431575	4.09623687607002	0.0350777877206538	0.953383219548246	0.989446911725587
Merged-chr8-26686842-2	chr8	26686342	26687342	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137581.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.0632597837747	3.88671699520556	4.22274310083743	4.5375213875928	4.12101299479335	4.54006570213863	0.956267971440624	0.0531922936942829	0.295659610802531
Merged-chr6-120188440-2	chr6	120187940	120188940	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-5383.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.06391946472848	4.13542300014282	4.79932864098469	3.87114283789254	3.72460468878726	4.06501848641297	-1.36401489375935	0.0136395325770248	0.124585073723389
Merged-chr5-43870595-9	chr5	43870022	43871022	+	886.992615	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	1713.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.22926432750264	7.19841012852858	7.42211119115701	7.70093927495377	7.7721848886504	7.51000166594392	0.572758108865723	0.0142252159423657	0.128091044680708
Merged-chr7-80030678-2	chr7	80030144	80031144	+	637.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	4416.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.35288616735698	5.33168392353584	5.66267528517581	5.43674173329298	5.33753960603954	5.45468415753701	-0.0768503368910308	0.822382119245306	0.958041123079214
Merged-chr7-19203165-4	chr7	19202660	19203660	+	969.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 20 of 21)	intron (NM_001347582, intron 20 of 21)	-9378.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	3.62950980755192	3.72848936592713	3.51781848477431	4.26262937667284	3.9233476969141	4.02467472390178	1.39829292443775	0.0106355481692943	0.104975156885889
Merged-chr4-53826459-4	chr4	53825965	53826965	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028053, intron 1 of 5)	intron (NM_028053, intron 1 of 5)	420.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	7.17241043287656	7.31338269591523	6.90647817632145	7.07561262747306	6.88367509737381	6.26709111332022	-0.53201206842373	0.091135213424702	0.401715253411167
Merged-chr15-85037000-4	chr15	85036486	85037486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133750)	promoter-TSS (NM_133750)	-76.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	6.10410243427107	6.2598910092822	5.97110955028545	6.15881661699864	6.01438127524048	5.88431660208897	-0.165864657567845	0.577820177056159	0.87219514592351
Merged-chr1-30872227-3	chr1	30871688	30872688	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8932.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	5.1308266805491	5.14214842685544	4.91490664115868	5.06201670726718	5.24237416841255	4.86312574147843	0.00843703173056634	0.982384856644472	0.995997217680293
Merged-chr7-25771224-3	chr7	25770723	25771723	+	666.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190974, intron 9 of 18)	intron (NM_001190974, intron 9 of 18)	-16464.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	3.8839622684542	3.61979346008926	4.21472188707672	4.07039659828907	4.06818618893685	4.28142202861443	0.649981818264915	0.224338352590453	0.619090360474606
Merged-chr7-133637610-4	chr7	133637115	133638115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-60.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	7.53641729250793	7.83072087533437	7.64637549558099	7.59987023434685	7.94832766737896	7.68469481593082	0.115120700570461	0.632863932064766	0.895780322853146
Merged-chr17-43040228-3	chr17	43039731	43040731	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	23676.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.86329642763586	6.71182739061349	6.74988642556817	6.44972317441038	6.55586780715378	6.51080394641832	-0.429024956201239	0.0944773890330858	0.409742590044355
Merged-chr5-64677177-4	chr5	64676677	64677677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66478.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	6.71267479982628	6.65759722238098	6.87423952848521	7.00676598913688	6.97714885871001	6.87500792203455	0.329671758953696	0.185315795201263	0.569470877644115
Merged-chr2-61593623-4	chr2	61593108	61594108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149324, intron 1 of 9)	intron (NR_149324, intron 1 of 9)	511.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	9.29847160584117	9.46145999787263	9.11327899812623	9.20106770530142	9.4402863716698	9.03037354013288	-0.084820516280879	0.704435423954382	0.922410722571361
Merged-chr2-142595819-2	chr2	142595319	142596319	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	305645.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.55768156321603	3.95088973298195	3.92027235995387	3.70188551014007	3.59814540822852	3.68991228904139	-0.524157782822386	0.346213858176761	0.734515828466387
Merged-chr12-99557398-2	chr12	99556898	99557898	+	887.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6443.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	4.69113866309963	4.88299677285111	4.77815541935123	4.95026193202661	5.00600975657649	5.06113321503833	0.478258785355845	0.210989314276396	0.603332337700291
Merged-chr14-55772333-2	chr14	55771833	55772833	+	705.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 19 of 26)	exon (NM_001361604, exon 19 of 26)	6371.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	3.04547994447385	3.19651528083423	3.27625679520274	3.27347815515794	2.82187816812823	3.29273044172196	-0.128791986155293	0.85375762789431	0.965800621328663
Merged-chr9-99113673-2	chr9	99113173	99114173	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	26538.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	2.57154145450995	2.86595022225177	2.83074609751124	3.0133109800606	2.6679903057667	2.96433414751127	0.626768048298528	0.409712495324435	0.783037110673669
Merged-chr13-101759257-3	chr13	101758658	101759658	+	907.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	9059.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.42276318407657	4.46939497469679	4.50285059492382	4.63720097036336	4.39265314759631	4.68772427476716	0.264814437758839	0.538018419142005	0.854944075396138
Merged-chr17-31079372-3	chr17	31078897	31079897	+	686.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	21703.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.36358034665628	5.47884591544925	5.45210614939107	5.94392227041689	5.67928818863904	5.35736836831057	0.486590721336843	0.161773360035414	0.534903241209541
Merged-chr7-129530584-2	chr7	129530084	129531084	+	761.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-61279.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	2.75098067018577	2.64433075287746	2.77744707615796	2.69495509672996	2.50776903029255	2.72848313792043	-0.447805150331955	0.552926611828642	1
Merged-chr7-55865871-2	chr7	55865371	55866371	+	659.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	23800.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.20010410565085	3.97929146451789	4.21915289414726	4.44797264834541	4.32592252600623	4.58001291349214	0.847951929659284	0.0674486484568633	0.339643375744292
Merged-chr7-128739722-4	chr7	128739231	128740231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	698.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	7.29635189528624	7.15900570262893	7.32206788798803	7.11260708532735	7.03827919812295	7.16075113436701	-0.236384988443536	0.314433245388844	0.708751624403771
Merged-chr13-93582667-2	chr13	93582167	93583167	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	55091.0	NM_016668	12116.0	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	3.55536569912325	3.43812759259679	3.67198773704122	3.34712014608106	3.36434529538373	3.7886122756657	-0.170975104240504	0.776322505787693	0.94480820353868
Merged-chr4-63089663-3	chr4	63089157	63090157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028326, intron 4 of 14)	intron (NM_028326, intron 4 of 14)	64515.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	2.79060345957409	2.55494140109629	2.72105690895071	2.48826263671322	2.27269796194151	2.85354661186678	-0.728235730296255	0.407786757444683	0.781877100109619
Merged-chr10-41887384-4	chr10	41886875	41887875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013370)	promoter-TSS (NM_001013370)	-64.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	7.07094492809811	7.29584551455548	7.31972622110318	6.9612610938759	7.30114086620158	7.27743180673314	-0.0611766022258965	0.808819636026771	0.954721853010197
Merged-chr12-111430621-4	chr12	111430126	111431126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	-12035.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.26747377987408	8.05732261736424	7.8333924535644	7.9927538790105	8.20909871916861	7.88905708429866	-0.0396878962659636	0.868693387333987	0.969708434868159
Merged-chr15-58239205-3	chr15	58238659	58239659	+	806.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-24267.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	4.04335956608852	4.22211232636626	4.40747857539116	4.17934018198312	4.16977813987881	4.1230827512225	-0.181336127723396	0.702977540989584	0.922070010099175
Merged-chr5-24842784-4	chr5	24842285	24843285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053075)	promoter-TSS (NM_053075)	-424.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	8.12515187878604	8.4439811782386	8.14754499243098	7.97483740079065	8.16602593318055	8.04938230007165	-0.257571543102614	0.251903954787419	0.649428218365646
Merged-chr19-8771028-4	chr19	8770544	8771544	+	897.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025791)	promoter-TSS (NM_025791)	48.0	NM_025791	66836.0	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	6.26322608448477	6.46769613842704	6.39276487698715	6.51398911051949	6.49516855022204	6.59338826968969	0.249990090740387	0.348783032941801	0.736694000216487
Merged-chr7-27232289-2	chr7	27231789	27232789	+	660.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-724.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	5.39873333755175	5.61707002264229	5.11952460553132	5.25870437588092	5.29369367164308	5.44492398140902	-0.152640185443141	0.672173084815658	0.910736957619704
Merged-chr19-5569603-2	chr19	5569103	5570103	+	675.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	1579.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	4.99469504621553	4.65952406309376	5.05630816079039	5.04172900836643	5.05045267238618	4.8315584204883	0.168999488427275	0.67010996739392	0.909894172601632
Merged-chr11-4530923-2	chr11	4530423	4531423	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 2 of 17)	tRNA-Ala-GCA|tRNA|tRNA	63892.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.29693838635513	4.37399633066519	4.55689494994731	4.49659566655994	4.26668744656478	4.50273105860625	0.0335966305275544	0.939945612849556	0.986753310597155
Merged-chr3-97767095-2	chr3	97766595	97767595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110360, exon 1 of 17)	non-coding (NR_110360, exon 1 of 17)	919.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.10294052687627	4.03762890963012	4.03603207893662	3.88389657483289	3.50579278070619	3.80737265954842	-1.02952348541214	0.054640563524202	0.300220021772438
Merged-chr4-129788901-4	chr4	129788411	129789411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31568.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.87594124047563	7.76258535371964	7.69591365909562	8.08424764871947	8.51976634899126	7.73389148612448	0.541615683778305	0.0467715427663635	0.273709208157475
Merged-chr7-17021770-2	chr7	17021270	17022270	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 2 of 12)	intron (NM_011155, intron 2 of 12)	6144.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	3.31247679652346	2.89047054711796	3.30552487080123	3.13724491145957	3.04977913319284	3.4289243007808	0.115555158898806	0.867244332666034	0.96931826298411
Merged-chr4-142044834-2	chr4	142044334	142045334	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	26936.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	3.37402996041883	3.31990349542292	3.7036474014407	3.99758167388018	3.33712690791361	3.67166742498731	0.781570143971385	0.215858624249335	0.609244934233767
Merged-chr2-148491338-4	chr2	148490857	148491857	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47822.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.7522872006176	7.04470475933092	6.98702655378345	6.93685663564239	7.17905403615454	7.1347679486982	0.237922469131932	0.349718178848607	0.737738318264753
Merged-chr4-46375156-4	chr4	46374656	46375656	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14267.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	4.44874268027613	4.46218321350904	4.21284858804205	4.11898163204893	3.71097724178448	3.93243777522069	-1.31702159494306	0.00931497511783392	0.0957831975897678
Merged-chr11-76945638-4	chr11	76945090	76946090	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178645)	promoter-TSS (NM_178645)	-66.0	NM_178645	104184.0	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	5.56441843660538	5.45619809576862	5.24286307900401	5.36773714554411	5.36182027069226	4.97741057954714	-0.344434543030977	0.346133788375492	0.734515828466387
Merged-chr4-130825984-2	chr4	130825484	130826484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	33447.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.56451208594328	3.72635389226974	3.75178022484222	3.60106032821499	3.69942224991173	3.86949409929336	0.141286035571914	0.795725300572621	0.951283863759945
Merged-chr14-73377142-2	chr14	73376642	73377642	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	8147.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.86035042837784	5.05423186008784	5.20854846410021	5.33430430966824	5.33449887202008	5.10577209432927	0.474623726374608	0.197734460976914	0.585831904182556
Merged-chr14-33202821-2	chr14	33202321	33203321	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-14002.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	6.66898187237903	6.51143332783875	6.4316755682468	6.07019843404163	5.96233010503945	6.08501441941594	-0.849034958195293	0.00223785330324109	0.0336357112818072
Merged-chr1-59482032-4	chr1	59481533	59482533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008057)	promoter-TSS (NM_008057)	-114.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	6.29774477261418	6.53319286380495	6.66849353780856	6.46079169182265	6.72998405175851	6.59795278571038	0.165476824032665	0.551729496817154	0.861432232585175
Merged-chr15-77830897-4	chr15	77830403	77831403	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	11272.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.15956610543967	3.92971798399399	4.16459414370881	3.85500124782206	3.83918858874677	4.14324220402031	-0.422245326280659	0.4052655903672	0.780049815379569
Merged-chr4-111002210-2	chr4	111001710	111002710	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-412796.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	2.91051434893202	3.10015584680005	3.25095051777327	2.90148561661859	3.20538392155732	2.97703488003265	-0.22106078607518	0.751827120025461	0.938016588905039
Merged-chr13-100409276-3	chr13	100408735	100409735	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 15 of 15)	intron (NM_008670, intron 15 of 15)	43629.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.69027542028524	4.79791985424614	4.73919843060351	4.35089098546146	3.86275658544793	4.6936244192246	-1.00912915990223	0.0459444866158505	0.270881374784361
Merged-chr7-141047513-2	chr7	141047013	141048013	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-13761.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	3.17777978120015	3.18248803374286	3.34689526223276	3.13522421999547	3.04005713186104	3.56423096226317	0.0991109951469843	0.881681805394321	0.972854789328347
Merged-chr13-101914892-4	chr13	101914410	101915410	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146693.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.4594920807819	4.39232381334481	4.6277451968133	4.35769841939902	4.67623831646315	5.00552693337332	0.500483774354888	0.269558981688772	0.666706790078014
Merged-chr9-118736180-2	chr9	118735680	118736680	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	24488.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.21315571347926	3.18053790533806	3.20338490851966	3.09511856478391	2.93365359592753	3.16057353269907	-0.61426285638976	0.345680592657926	0.734097053592995
Merged-chr2-124642375-4	chr2	124641874	124642874	+	973.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-11207.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.79887448183566	6.0810385720155	5.64060372852353	5.53671091323768	5.97000958598121	5.78392050997427	-0.145625581014635	0.66765070431581	0.908812325034517
Merged-chr17-49422260-4	chr17	49421767	49422767	+	879.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-6097.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.38765104614937	4.56304515989643	5.32984466368458	4.41043949992888	4.24064188310347	4.83633254802169	-0.712459568504315	0.173811452821732	0.55312285793363
Merged-chr5-121595344-2	chr5	121594844	121595844	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1520.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	4.74759203793401	4.80621041499558	4.85966396894426	4.62334387125814	4.51855041814946	4.77825716133154	-0.393906623494663	0.329012724544366	0.721105303873632
Merged-chr11-52101101-2	chr11	52100601	52101601	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	URR1A|DNA|hAT-Charlie	2277.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	5.19910228963233	5.05029133622419	4.83641984444912	5.24643753541889	5.03066414346925	4.97984011977043	0.0975216451196683	0.798440333365785	0.951930937621884
Merged-chr5-53591229-4	chr5	53590769	53591769	+	872.9208369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	783.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	4.51546170442068	3.95836409120987	4.09685254734922	4.62262795627155	4.08306542757653	4.26467214968828	0.330200621135734	0.529473636794846	0.850904712036958
Merged-chr5-86935451-4	chr5	86934957	86935957	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-8954.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	3.46045401358759	3.42762317347273	3.44559199670892	3.77336626503277	3.48896533839152	3.46067227324823	0.504340047364121	0.385738176335022	0.76666449726431
Merged-chr2-152398914-4	chr2	152398416	152399416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-870.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	3.99770516978014	4.08946006545109	3.94666884785718	4.04766089510627	4.1859377544387	3.96560990315877	0.177170839173034	0.71828516963819	0.927293456311605
Merged-chr12-111744227-4	chr12	111743722	111744722	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-14627.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	5.75772674173369	6.01789843424298	5.96762686146174	5.7962606446046	5.84393766782746	5.78648803686112	-0.189075861386683	0.534876878176549	0.853210806113803
Merged-chr16-10412125-4	chr16	10411641	10412641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011955, exon 2 of 11)	exon (NM_011955, exon 2 of 11)	203.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	4.9930507693824	5.63410351950607	5.56182010143038	5.4746189170522	5.23885944323874	5.6754680523002	0.0784395322780659	0.841008016058723	0.962832831784718
Merged-chr2-152757231-4	chr2	152756750	152757750	+	909.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 3 of 4)	intron (NM_053091, intron 3 of 4)	3077.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	4.87372943441665	4.81036856647245	4.15335650429112	4.92219872268742	4.47111127189938	4.22739277781105	-0.187508672492737	0.72313203022882	0.928989158354973
Merged-chr4-3797901-2	chr4	3797401	3798401	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37754.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.69294519622938	2.58541079045276	2.80822528904889	2.57191653372856	2.47822451649107	2.76239836851679	-0.512472227051744	0.507068274907198	1
Merged-chr19-3853670-2	chr19	3853170	3854170	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	1897.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	2.64286040035341	2.87053202719101	2.71675831107402	2.75538444065567	2.65216290344901	2.91143031695768	0.119406593643918	0.872295170873977	0.970261003150518
Merged-chr18-23877865-2	chr18	23877365	23878365	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	73895.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.00946405737617	2.89997774373286	3.06266901579938	3.19489464283989	3.13328847058563	3.30474439985033	0.982166827622151	0.134880488958774	0.490907870058685
Merged-chr10-117393419-4	chr10	117392927	117393927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16454.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	6.32966060608903	6.19629213555108	5.74914713482082	6.62792880997541	6.47876391293922	5.89765539916462	0.423358988871512	0.22795168894	0.622981752321771
Merged-chr11-20169166-4	chr11	20168661	20169661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32251.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.58094708363267	4.50752787785053	4.52499696015024	4.47509010468643	4.64102496085735	4.9936645417829	0.412460823709195	0.340927862873696	0.730599337545402
Merged-chr7-25705890-4	chr7	25705371	25706371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011577)	TTS (NM_011577)	13182.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	8.04548547483927	7.79369866271488	7.94838888329679	7.88389851416684	8.0302149495702	8.04845947451903	0.0801942876205021	0.714953112585105	0.926185464837562
Merged-chr14-33245092-4	chr14	33244597	33245597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	28274.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.0690064590882	5.02802903039068	4.96836816003624	4.15365213006687	4.26238363607808	4.25162100519587	-1.96852606148396	5.31239015149048e-06	0.00023351924580618
Merged-chr10-26376885-3	chr10	26376382	26377382	+	755.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	3.66473518757469	3.64949309354093	3.77035685128911	3.53478697079973	3.71557677991735	4.02525274908516	0.244047730189044	0.661912993056156	0.906495637422278
Merged-chr11-88987709-1	chr11	88987209	88988209	+	602.0	f1_c57bl6.idr	intron (NM_016706, intron 5 of 6)	intron (NM_016706, intron 5 of 6)	-11694.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	2.5035127903967	2.47191045341399	2.5177923471183	2.7935279312114	2.67884813599606	3.18506553946192	2.24536266586889	0.00656728942867914	0.0746015963339291
Merged-chr2-166270218-3	chr2	166269694	166270694	+	768.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-3714.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	2.04978596607698	2.05150379265725	2.22143478476087	1.89060483397305	1.84637373435022	2.16834253315209	-1.09273431102786	0.267736919575515	1
Merged-chr9-5309912-2	chr9	5309412	5310412	+	932.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	1063.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	6.10049308087453	6.30430059820606	6.11006538092392	6.00355367953343	6.17126365769051	6.05930883031896	-0.161386172929262	0.576007837976874	0.871496930818991
Merged-chr8-26917765-4	chr8	26917270	26918270	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-59566.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	2.85334829220397	2.74380978142399	3.12413588661938	2.81945347301483	2.80982909427618	3.02906167874994	-0.119534228018939	0.868163592675329	0.969642939011354
Merged-chr15-50868485-2	chr15	50867985	50868985	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	20564.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.44047944377092	4.60687850981696	4.61308569814535	4.42883518171678	4.09128525479448	4.47860361687678	-0.565735815490793	0.21294482613467	0.605566144429689
Merged-chr5-30961060-1	chr5	30960560	30961560	+	1000.0	f0_c57.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-733.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	8.23305493278314	8.50879519163416	8.27453846944789	8.41968499402018	8.76483395374368	8.59424349031051	0.355807803063028	0.112648615157181	0.448338447691312
Merged-chr6-37223169-4	chr6	37222662	37223662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76814.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	6.58007387331075	6.85430649470326	6.67776589819379	6.37814873562277	6.89381040066255	6.51424394834132	-0.133776310000709	0.646201506619678	0.900938614137053
Merged-chr4-136052542-3	chr4	136052075	136053075	+	725.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_154592).3	promoter-TSS (NR_154592).3	796.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	6.56224063185686	6.78788502556315	6.75782791699808	6.81394166138238	6.65845485873338	6.37994202995533	-0.105812201306697	0.700784621573438	0.921002460903367
Merged-chr11-5707701-4	chr11	5707200	5708200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026080)	promoter-TSS (NM_026080)	-1.0	NM_026080	64660.0	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	5.62946652661358	5.52121919115423	5.6697876033893	5.74518821919871	5.50499691350638	5.17504717835084	-0.186500958533204	0.5946942662762	0.879234550609631
Merged-chr8-57485231-1	chr8	57484731	57485731	+	613.0	f0_balb.idr	intron (NM_021788, intron 2 of 3)	intron (NM_021788, intron 2 of 3)	2629.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	3.5330270042463	3.50111782142183	3.90598713480872	3.68213622451651	3.74409547238923	3.57306494950997	0.0776681014127617	0.891839724116599	0.974942585822634
Merged-chr9-71162312-3	chr9	71161807	71162807	+	847.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	RSINE1|SINE|B4	326.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	2.90764607840725	3.00287878210537	2.7585119882995	3.08539863526833	3.00789968761565	3.02349507929153	0.654899601341877	0.348732912340978	0.736649695871343
Merged-chr4-86428336-4	chr4	86427873	86428873	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029967)	TTS (NM_029967)	129930.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.71386897069113	4.96139924867723	5.17703134623173	4.65498175738791	4.58882031708482	4.88211506087289	-0.566848541637009	0.171074688649018	0.549046475471744
Merged-chr12-98238656-4	chr12	98238154	98239154	+	829.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 7 of 16)	MTC|LTR|ERVL-MaLR	20805.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	3.86972415250903	4.32634119041348	4.12100351363537	4.07562080269697	3.99795600549162	4.09538593822872	-0.196303736884981	0.6966308501981	0.919558026893893
Merged-chr11-94989849-4	chr11	94989346	94990346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1366.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	5.34805677995692	5.15052553323096	5.80649498726732	5.60552764919497	5.38081565870935	5.59671194903597	0.146356767053858	0.693771679106875	0.919037099765495
Merged-chr16-33186298-4	chr16	33185788	33186788	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	1217.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	6.92663600966153	6.99688498640643	6.79244331101596	6.89482754564285	7.24452831634116	7.06430572474051	0.255716358853509	0.317243209589621	0.711181392710422
Merged-chr1-160906849-1	chr1	160906349	160907349	+	1000.0	f0_c57.idr	intron (NM_001024952, intron 1 of 19)	CpG	438.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	7.62184865782866	7.80064643347533	7.429270186965	7.59406424182843	7.32134495082113	7.37699982465779	-0.28756497401814	0.238176938847926	0.634837659879174
Merged-chr13-64369051-6	chr13	64368450	64369450	+	935.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009984, intron 2 of 7)	intron (NM_009984, intron 2 of 7)	1570.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.44749442174977	4.64910834685966	4.81934118283496	4.60773367232699	4.50026506560812	4.58050798582365	-0.189274718143775	0.655566232687112	0.90429384180742
Merged-chr14-27337345-3	chr14	27336846	27337846	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	1309.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.05619297442281	6.16695660268172	6.03391757236965	6.71538878594649	6.41317661086431	6.16440918767521	0.609473034550711	0.0423565241908226	0.257895628923603
Merged-chr7-110184857-4	chr7	110184368	110185368	+	920.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEi|LINE|L1	-36835.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	6.32754968522882	6.36654049050735	6.13154665872516	6.23010944838013	6.37361502076852	6.19210632523211	-0.0212469016316547	0.93970427121257	0.986731489878728
Merged-chr5-124536920-4	chr5	124536392	124537392	+	862.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3899.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	3.71699709638902	3.95644357720755	3.72261928926304	3.82014453431776	3.7062047241503	3.89507104631658	-0.0158638727009642	0.976225216046046	0.994625532184756
Merged-chr2-117378473-4	chr2	117377978	117378978	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-35601.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.10177760341294	3.85543516193384	3.73768078124246	3.81414961997324	3.86488897632476	4.0120127044587	-0.0582277721946075	0.91178127630724	0.980182089643468
Merged-chr10-99467556-8	chr10	99467066	99468066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141605.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	7.31948290503072	7.29255180840693	7.2535777692734	7.07724946504125	7.43272339708391	7.22854779056646	-0.043655520241717	0.857377064604534	0.966747388099837
Merged-chr9-113704924-3	chr9	113704442	113705442	+	931.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	3317.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	3.49106155322792	3.68202507839868	3.67498964672285	4.11982907958207	3.39649079848212	4.08497161837969	0.92068947574136	0.13339467260644	0.488534503443515
Merged-chr13-45507485-4	chr13	45506996	45507996	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025508)	promoter-TSS (NM_025508)	52.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.92242174240238	3.75797519006966	3.762400610854	3.48309782785311	3.44089172364076	3.92824690025193	-0.645867525462145	0.263573958808329	0.661476013554917
Merged-chr14-25494401-2	chr14	25493901	25494901	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	35216.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.26278148493452	4.00715280913759	3.97345329877687	4.04488037944538	3.55940519400507	3.78264152235212	-0.863887415668678	0.114794747541477	0.452350888114757
Merged-chr2-157071760-3	chr2	157071269	157072269	+	986.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	7496.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	3.90798680229568	3.55176246545138	4.06131070308762	3.51166934846806	3.65435300546457	3.47989149209605	-0.991390593129499	0.0920409875336543	0.404166261581102
Merged-chr15-86184315-4	chr15	86183853	86184853	+	854.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-1375.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	7.10218974261594	7.2334106158514	7.24788314106711	7.40827900852402	7.33699856044408	6.98339715398775	0.104901331112454	0.676345265438812	0.912525597578286
Merged-chr4-149158833-3	chr4	149158327	149159327	+	768.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081274, intron 6 of 12)	intron (NM_001081274, intron 6 of 12)	7255.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	3.60202038825753	3.62896608749135	4.26100823677042	3.78492736627459	3.83899102624183	4.0341579911055	0.0885454842377735	0.878649588496655	0.971996689041435
Merged-chr14-73369164-2	chr14	73368664	73369664	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	16125.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	3.95425806222727	4.16320213924622	4.17207300183957	4.43159613273978	4.08156212028912	4.53472914741514	0.699455585046656	0.15298724182775	0.521583316315799
Merged-chr4-134286367-4	chr4	134285901	134286901	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146156, intron 1 of 2)	intron (NM_146156, intron 1 of 2)	852.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	5.86377094395324	5.87961161945841	6.10857000967895	6.08469891424953	5.98874574689658	5.97018055796248	0.122306739535795	0.679479971797603	0.913863725020095
Merged-chr2-91483668-4	chr2	91483153	91484153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	B3|SINE|B2	26122.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	6.74234227265189	6.64276600407275	6.3102434174582	6.53547882346021	6.76139794068736	6.2416541309709	-0.0696480825636601	0.817077700303488	0.956754861188725
Merged-chr12-4199347-2	chr12	4198847	4199847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 8 of 21)	exon (NM_138305, exon 8 of 21)	34618.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.92894431986066	6.17748989566725	6.06275633046056	5.23722385855996	5.22097070263488	5.59526590989851	-1.31712065916289	6.61074854437435e-05	0.00199299697420399
Merged-chr10-117879369-6	chr10	117878851	117879851	+	947.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33377.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.62757436217049	6.80268228320576	6.79187941098578	6.87326730476827	6.87630928695491	6.97766607191687	0.257195019121267	0.301987385238914	0.698692201950827
Merged-chr10-111992822-3	chr10	111992352	111993352	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 2 of 5)	intron (NM_028608, intron 2 of 5)	4412.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	3.72271892459549	3.87191862824151	4.17809212319106	3.53583631102019	3.89334182528967	3.93520201800213	-0.406645633523727	0.469310400039726	0.818943090863774
Merged-chr15-87071107-3	chr15	87070633	87071633	+	677.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-473166.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.93275945125084	2.78568367960483	3.19713748053592	2.97019533357565	2.49592032396476	3.10532325474814	-0.443216960346389	0.590424425748304	0.877218317361274
Merged-chr10-37257731-4	chr10	37257225	37258225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-118799.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.58547125958723	5.36302186431834	5.36863119597755	5.25876674725375	5.43387699428141	5.65639131066372	0.0106715440353245	0.975477270851426	0.994504910226003
Merged-chr10-88354405-2	chr10	88353905	88354905	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	ID|SINE|ID	2670.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	4.28532301343452	4.28608544909223	4.14058617560489	4.5124448009504	4.40156305406648	4.75490976701667	0.798123410983871	0.0788153427052827	0.370868463259694
Merged-chr8-126585694-4	chr8	126585119	126586119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7817.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.64003933135323	6.68523958438354	6.31197867287448	6.87631475626357	6.91103253394611	6.4341073053935	0.319654986174397	0.273317306833569	0.670583068670695
Merged-chr11-75458824-4	chr11	75458296	75459296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2743.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	8.19219994696531	7.92745171292322	7.97335470969641	8.09666475460908	8.33874530189995	7.99128962323465	0.167515498626786	0.467458837178939	0.817990683108999
Merged-chr2-72786397-2	chr2	72785897	72786897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27320.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	4.03303905348496	3.83903703088276	4.07568325661565	5.02068169675699	5.0335851521146	4.88846495412223	2.63228504547528	1.16141001181085e-08	1.03578353979375e-06
Merged-chr2-35718243-4	chr2	35717801	35718801	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001602, intron 8 of 13)	intron (NM_001001602, intron 8 of 13)	21569.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	5.81213734426187	5.91862436201875	5.79917533777974	4.96352783556855	4.68002313139617	5.03307861581427	-1.93023317168987	5.57769631069282e-08	4.25788031761585e-06
Merged-chr6-38974045-4	chr6	38973545	38974545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	55059.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.52226738194197	6.43110962471399	6.638812791132	6.8447867945349	7.00287791449385	6.59621681388109	0.486339306856652	0.0716394987416605	0.351113128395543
Merged-chr6-140750686-4	chr6	140750190	140751190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123805.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.32197183660591	6.93187795951455	6.52153525974027	6.54429526032441	6.9201083324612	6.307914421386	0.00693053668667516	0.983076067310762	0.996209928131358
Merged-chr9-32520933-1	chr9	32520433	32521433	+	605.5	f0_balb.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	20519.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.48172397036764	6.4214212057417	6.33142153439572	6.42640441542959	6.48559801018378	6.24826850800468	-0.0295346137367836	0.913516635269693	0.980699737319965
Merged-chr5-54013442-4	chr5	54012960	54013960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	14937.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.53278787839122	5.89670396016473	5.45770420887471	6.10228886186125	6.17408900064737	6.05443370019993	0.806143502646322	0.0124878197636353	0.117543722499159
Merged-chr1-39918944-4	chr1	39918448	39919448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	18035.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.8723412564605	4.40388549121937	4.83368776683972	4.7737328362494	4.99932073422463	4.89892070886678	0.410326857828604	0.330586436177844	0.721995374054402
Merged-chr7-96476919-4	chr7	96476403	96477403	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-134939.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.62699141634186	6.519235205098	6.7015970203028	6.0880570112176	6.19147464140372	6.31468667800687	-0.682575279227549	0.0121742685599247	0.115374247402255
Merged-chr2-25583089-2	chr2	25582589	25583589	+	762.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2990.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	5.51057739958894	5.75691654813803	5.62735695692094	4.96349883102726	5.33771056756007	5.24858341004532	-0.852073867695092	0.0165442295861033	0.1423149235398
Merged-chr9-21531304-2	chr9	21530804	21531804	+	912.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	B1_Mur1|SINE|Alu	5127.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	3.63547728399131	3.6372664592187	4.03371138699689	4.23277678025052	4.09190665553738	4.10238783769921	1.14783181820631	0.0288983566430186	0.203950335839889
Merged-chr2-28513192-4	chr2	28512685	28513685	+	903.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145834)	promoter-TSS (NM_001145834)	18.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	2.8948259019431	2.66970308502021	2.83639296357452	2.60990986210906	2.72882837482061	2.78807236080473	-0.488631354668317	0.509594127183056	0.840445299624642
Merged-chr4-105640971-3	chr4	105640433	105641433	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	483586.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.5409422637632	3.65444988476694	3.8549363086244	3.21034988789803	3.24833590596538	3.30504623430901	-1.66503437065556	0.00685179757019079	0.076926679400182
Merged-chr8-122989177-3	chr8	122988673	122989673	+	748.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	53111.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.3598517469439	4.16430889234958	4.0652797885481	4.06713498350878	3.99053784139028	3.76163445095698	-0.735717107924485	0.147848325012485	0.513107343244259
Merged-chr11-29219272-3	chr11	29218783	29219783	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134034, exon 16 of 16)	3' UTR (NM_134034, exon 16 of 16)	27989.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	3.95294698029282	3.84824408502733	4.06079345287471	3.16518727668173	3.32368316387837	3.42664340771646	-2.4235487084336	0.000110425041470781	0.00308330431231568
Merged-chr9-44509637-2	chr9	44509137	44510137	+	960.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030256, exon 9 of 9)	exon (NM_030256, exon 9 of 9)	10501.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.08526225098952	3.94096802966419	4.15241926933647	4.05307334561243	3.71922283685653	4.03670486279902	-0.363056070910589	0.478886401953485	0.823902888227897
Merged-chr18-25682467-2	chr18	25681967	25682967	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-2719.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.53989308689025	2.8512712783178	2.71071276954327	2.5320961133816	2.2809130004777	2.33447336270605	-2.17787747238539	0.0168211825608183	1
Merged-chr19-34662230-4	chr19	34661744	34662744	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	21355.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	3.92650005844813	3.97688655250878	3.78860923604156	3.98151154233774	3.72232257978601	3.96068157431032	-0.0558760275577964	0.91437481291653	0.980912729144991
Merged-chr1-39469216-4	chr1	39468713	39469713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	9534.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	3.54011168879756	3.65577559043323	3.61936129369187	3.88381636606362	3.76582215977494	3.52142290145013	0.448149343080858	0.422426012549893	0.791224431044648
Merged-chr12-76329183-4	chr12	76328642	76329642	+	808.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101471, exon 2 of 2)	exon (NM_001101471, exon 2 of 2)	4251.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	4.26846425566195	3.96833807314627	4.53006829084273	4.44270687693172	4.23828547024754	4.77643858795347	0.589991031512633	0.237907915037318	0.634441439472635
Merged-chr14-30190580-4	chr14	30190087	30191087	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	L1VL4|LINE|L1	162899.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	6.67892397220861	6.92649308222421	6.7790186288143	6.77965490406311	6.90587834256413	6.67840517220327	-0.00371983608158497	0.988510242450109	0.997426973334006
Merged-chr1-80714021-2	chr1	80713521	80714521	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	44532.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	2.48681484766197	2.47870417382221	2.59971828927426	2.38081966039567	2.43078042855964	2.48616248280843	-0.544372897827146	0.493649814179343	1
Merged-chr8-111537284-3	chr8	111536802	111537802	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001168621, exon 1 of 5)	exon (NM_001168621, exon 1 of 5)	662.0	NM_001168621	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.36365137219952	4.54511244439194	4.63092374110076	4.64487621891837	4.38211058873942	4.61837725804004	0.0844769411048197	0.845614295102663	0.963834884892227
Merged-chr17-71094017-4	chr17	71093521	71094521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	74464.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	5.89478076909668	5.75960750905838	5.62663994465255	5.27028478888664	5.58946005287474	5.51866838742423	-0.558673183923948	0.093312896149259	0.406908534609941
Merged-chr7-10494193-4	chr7	10493689	10494689	+	928.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009577, intron 2 of 3)	intron (NM_009577, intron 2 of 3)	1192.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	3.79668362061794	3.42660787075562	3.32586998741758	3.57522090274719	3.35468989670443	3.5712625654546	-0.138896449918556	0.821164100495421	0.957942312428027
Merged-chr13-44491078-4	chr13	44490589	44491589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51362.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.41710203627341	5.07582904521712	5.1704878116569	5.62435763875484	5.75878403563556	5.66073002289038	0.868602415429934	0.0113133991008103	0.109767410492097
Merged-chr3-106545760-4	chr3	106545262	106546262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1863.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	7.27372395234539	7.37022124730521	7.13127764055246	7.61812498109448	7.76996415290084	7.48971042443336	0.541420542543527	0.0221689112632659	0.17283298966089
Merged-chr5-137684848-4	chr5	137684366	137685366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303266)	promoter-TSS (NM_001303266)	-113.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	4.29754130515967	4.21614839043792	4.69515172472373	4.34578414350016	4.61678845739631	4.5712370528932	0.280228094937941	0.543328013960983	0.857551302506722
Merged-chr5-122264501-4	chr5	122263998	122264998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-38.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	5.47264692603947	5.5435807352482	5.37877099191957	5.19467295295074	5.46299586939113	5.38066037396547	-0.226453747540263	0.506289185662193	0.838365362350894
Merged-chr9-41044773-2	chr9	41044277	41045277	+	744.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 4 of 13)	intron (NM_176860, intron 4 of 13)	34729.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.50646946538332	2.58604385497316	2.28694492917793	2.54410711874488	2.33130640892617	2.75150825006603	0.487444661759685	0.57639888284167	1
Merged-chr4-132786231-1	chr4	132785731	132786731	+	657.5	f0_c57.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10133.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.74362143119729	4.86225394806254	4.73101256611719	4.96662957149913	5.01088941152193	4.98596862981954	0.453503162393997	0.233596007781094	0.629836294896575
Merged-chr5-140505967-2	chr5	140505467	140506467	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	358.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	5.46827511806654	5.45819134175568	5.4021763940745	5.52029954162171	5.32605152063069	5.52380509093054	0.0135712478998866	0.967401615568143	0.992555129128888
Merged-chr3-144617936-4	chr3	144617432	144618432	+	912.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47505.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.04497759073922	2.76953585598275	2.96712578152133	2.86772097594382	2.74562461154276	2.66283837644201	-0.849616476041035	0.250915767656762	0.648265562320918
Merged-chr12-25097980-4	chr12	25097474	25098474	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1882.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	8.51036143754541	8.7328714086089	8.18318779623955	8.60306847124876	8.60468942581704	8.43436644304363	0.0688818025661219	0.770527667280537	0.943392092118189
Merged-chr7-97356930-4	chr7	97356421	97357421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14696.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	7.53457256793928	7.46604559021129	7.34893244571425	7.43787263914428	7.60407366662985	7.27936271078852	-0.000401611921813512	0.998649321069759	0.999766741353215
Merged-chr4-143188816-2	chr4	143188316	143189316	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 2 of 7)	intron (NM_001256380, intron 2 of 7)	23893.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	3.49128387430268	3.5769674102983	3.66863023588025	3.73472408919531	3.97620010465516	3.93856040017473	1.04342137941313	0.0544618189176459	0.299693077739533
Merged-chr10-22001350-2	chr10	22000850	22001850	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	6684.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.98754055570196	4.04488825175341	3.980073731254	3.80495557501066	3.73895962074578	3.74469742382349	-0.771875749392108	0.130761030414218	0.483282685584107
Merged-chr7-63907912-2	chr7	63907412	63908412	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8945.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.69304420030553	5.74519875461722	6.07507760613382	5.54125012346933	5.8346100853216	6.03093543349135	-0.0472512505002636	0.887918884375988	0.973937891761784
Merged-chr2-120742561-4	chr2	120742060	120743060	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024856, intron 15 of 15)	intron (NM_001024856, intron 15 of 15)	-11043.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	4.66624837328679	4.69177320674657	4.6590399378249	4.35115381622164	4.59673595939583	4.133712390202	-0.694631135479396	0.127960487601889	0.478381464365278
Merged-chr11-46481635-2	chr11	46481135	46482135	+	743.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134250)	TTS (NM_134250)	26704.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	4.73557600529445	4.81196781609674	4.9053587662767	4.38353715894308	4.09432324273998	4.52025531134037	-1.20647745019421	0.00633999368927446	0.072743821690175
Merged-chr2-103967060-4	chr2	103966590	103967590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-2467.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.36828870760846	6.38850923205349	5.80990724808651	6.14480633539935	6.13893066863143	6.09726641128599	-0.172229937521315	0.583403421768502	0.874049441266741
Merged-chr9-58892307-3	chr9	58891764	58892764	+	705.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 23 of 28)	intron (NM_008684, intron 23 of 28)	68752.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	4.68620735099278	4.91342035818763	4.46717780227217	4.6898593453038	4.75901463277025	4.93542792116511	0.182969758768002	0.664224307825771	0.90757310763982
Merged-chr5-66005490-4	chr5	66004981	66005981	+	919.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1196.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.80132059580905	4.14455613106465	4.41498688700422	4.30932022875272	4.46141742155067	4.56621940149841	-0.100149160130405	0.835696977874012	0.961816681235686
Merged-chr19-41092095-4	chr19	41091583	41092583	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 17 of 20)	intron (NM_011904, intron 17 of 20)	-14970.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	3.96428144621238	3.57577069516136	3.553186578425	3.79969470918897	3.57089551359487	3.88504410355414	0.113200965916905	0.844430445694474	0.96373428957366
Merged-chr11-20926102-1	chr11	20925602	20926602	+	722.0	f0_balb.idr	Intergenic	Intergenic	-94994.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.73938483026061	3.33386686005288	3.75798258910026	3.3854429822452	3.57713628448822	3.67848350621327	-0.24761164447999	0.679841598732732	0.914056754309378
Merged-chr8-70903274-4	chr8	70902780	70903780	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	3.91550876729624	3.70749135682966	4.55493345607058	4.07231180420098	3.97302370132161	4.2335989148815	-0.0279555378179913	0.960678758701734	0.990386809359123
Merged-chr15-99025530-2	chr15	99025030	99026030	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4361.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.07451898670075	3.07378037446774	3.11519590141793	2.9681967450725	2.9596770145924	2.94979718012708	-0.5917376414758	0.373237458308831	0.757104325190955
Merged-chr1-53784440-4	chr1	53783931	53784931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	784.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	8.1283855010708	8.31378925653454	7.79606551585395	8.08001042232595	8.29325699284864	8.08251716023061	0.0764249143145444	0.751965861951893	0.938030338790992
Merged-chr11-114925737-2	chr11	114925237	114926237	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 3 of 3)	ORR1A2|LTR|ERVL-MaLR	8649.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	4.06938115187119	3.86288815694099	4.088655345373	3.85821249397921	3.81462851713503	3.76247306440943	-0.598663323973815	0.243765497805278	0.640915663064491
Merged-chr11-120617038-2	chr11	120616538	120617538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024229, intron 1 of 13)	intron (NM_024229, intron 1 of 13)	852.0	NM_024229	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	4.746057578442	4.5849246713056	4.36910254412495	4.4136952791712	4.5413207089772	4.43778987907987	-0.285120328018867	0.514088473813776	0.842928757124913
Merged-chr10-94148266-4	chr10	94147814	94148814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011629, intron 1 of 13)	CpG	383.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	7.7749768533414	7.85331432802147	7.4548065290297	7.91692649896055	7.83304662501214	7.70998668390321	0.159840903272028	0.499226338437616	0.834363579494581
Merged-chr5-135961297-2	chr5	135960806	135961806	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 10 of 10)	intron (NM_001160366, intron 10 of 10)	13170.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	4.52539742397906	4.41706041008202	4.75117801871244	4.84292927403498	5.11655763368417	5.06372517115609	1.04196704581353	0.010406853648417	0.103308694628667
Merged-chr11-76897408-2	chr11	76896908	76897908	+	596.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7137.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	4.57790197383264	4.20869316509718	4.02945565509322	4.0358551422431	4.28957215868481	4.24721708577534	-0.280989415066678	0.574584528762854	0.870777333017021
Merged-chr14-33851613-1	chr14	33851113	33852113	+	570.0	f0_balb.idr	Intergenic	Intergenic	-40330.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	2.97478109138314	2.79571083867765	3.05169604453236	3.04624152931956	2.8679536555043	3.34125135526073	0.686391645763769	0.332800574732731	0.723870610962255
Merged-chr12-76958677-2	chr12	76958177	76959177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	3571.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	6.04119421454204	6.34003438965104	6.01542524154192	6.48551329846826	6.68942236144192	6.37914258916409	0.630030517233029	0.0311976740852179	0.213923982995459
Merged-chr7-63910415-2	chr7	63909903	63910903	+	736.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-6454.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.92484970693187	6.6119041411462	6.93415991696038	6.88695962934822	6.7277104882827	7.09501291773641	0.117121574621469	0.665063186802395	0.907732432508614
Merged-chr6-29527049-4	chr6	29526558	29527558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 1 of 9)	CpG	433.0	NM_012057	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	8.55706216588383	8.2740032040059	8.38699233283781	8.57121788563054	8.60877692262923	8.36573383016439	0.154685309840565	0.474909132346447	0.821727753368561
Merged-chr12-59130356-4	chr12	59129840	59130840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146034, intron 1 of 24)	intron (NM_146034, intron 1 of 24)	592.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	8.42500030467657	8.68741080518986	8.27360868606842	8.22854440448373	8.71986615378573	8.31655845466758	-0.0439180992157055	0.860691913524447	0.967593768027322
Merged-chr8-13597281-2	chr8	13596781	13597781	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34820.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	3.51267687012091	3.64190453645377	3.41334191447207	3.52718373606646	3.32784204915638	3.8459864444326	0.163104494748875	0.787968493172782	0.948776817409006
Merged-chr8-41276027-1	chr8	41275527	41276527	+	597.0	f0_balb.idr	exon (NM_023662, exon 12 of 38)	exon (NM_023662, exon 12 of 38)	36268.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	3.81882761212274	3.77339359287293	3.97811638134322	4.03551378911052	3.6667280341442	3.99950514354869	0.155193040191497	0.770243916406835	0.943392092118189
Merged-chr5-143471729-4	chr5	143471230	143472230	+	763.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7237.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	7.18525189875691	6.63801585175787	6.34528860464429	6.76480106150346	6.77780401084362	6.63424343398216	-0.0845255753792502	0.790064206361615	0.949368241827272
Merged-chr10-117083518-2	chr10	117083018	117084018	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	B3A|SINE|B2	-19666.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	2.84052123184822	2.69732031495501	2.94243667692902	3.10046143958065	2.68386075498279	3.01545409254888	0.559083734528026	0.448879665406047	0.807454029128485
Merged-chr2-91096244-2	chr2	91095744	91096744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	-434.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	8.04378626866248	8.06152522335366	7.79703044651202	7.85668739735244	8.18670015969512	7.94278735553828	0.0430987639538999	0.852555903656668	0.965412441739552
Merged-chr17-46835626-4	chr17	46835119	46836119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4206.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	5.13370933674769	5.05939943864399	5.50113396999262	5.45451828254732	5.28505931489929	5.4524584683269	0.32544473184258	0.368413698535365	0.753380524534667
Merged-chr6-87537046-4	chr6	87536516	87537516	+	964.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3757.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.21241843044262	5.79321403549589	6.250582029887	5.98094632064255	5.8498887036495	6.13079725422993	-0.191450721431358	0.546452417250911	0.858776736684105
Merged-chr18-60527330-1	chr18	60526830	60527830	+	613.0	f1_c57bl6.idr	intron (NM_026302, intron 1 of 12)	ID_B1|SINE|B4	1176.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	4.57101751170776	4.84113753259245	5.06234802271086	4.74206012509026	4.68785969979078	4.81823037312671	-0.191990863038485	0.642593937038234	0.899439807829718
Merged-chr10-30773566-3	chr10	30773046	30774046	+	828.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	29780.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.16120855290088	3.85063111040729	3.79519660252739	3.42613779653206	3.73805351553919	3.59319273511844	-1.15337933460398	0.0455962874606726	0.269669193761294
Merged-chr17-69158011-2	chr17	69157511	69158511	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013813, intron 1 of 21)	intron (NM_013813, intron 1 of 21)	1267.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.34926725336764	5.1825337892316	5.32511029019607	5.83300300656223	5.45213384412325	5.38926432420249	0.562490609377309	0.110543904442101	0.444247148071402
Merged-chr5-139394116-2	chr5	139393616	139394616	+	728.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362206, exon 2 of 2)	3' UTR (NM_001362206, exon 2 of 2)	4212.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	3.42649688269904	3.30797075149194	3.70833203070911	3.41700906645172	3.26889130094197	3.91317060946919	0.246445978107918	0.701147364735747	0.921164588055017
Merged-chr2-90521302-2	chr2	90520802	90521802	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-42128.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.37201721369497	5.96135206745569	5.79772470883798	6.34170364675617	6.19527634728161	5.77726587212328	0.0991108350352264	0.772665779164565	0.943848608021176
Merged-chr10-81138978-2	chr10	81138478	81139478	+	979.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2707.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	6.06684812849283	6.07458114576534	6.26882967561003	6.3041797692308	6.30544363289515	6.22859129859814	0.25290417137159	0.365128640057429	0.750338480639737
Merged-chr14-66847298-3	chr14	66846815	66847815	+	932.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21285.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	5.72849772187878	5.34239944800724	5.02254630365029	5.56396622323452	5.52308947568739	6.06227302810467	0.604602875800359	0.130523684777201	0.482798128672315
Merged-chr1-58797552-4	chr1	58797034	58798034	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009812, intron 1 of 8)	intron (NM_009812, intron 1 of 8)	2160.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	6.31164180511866	6.45039537222671	6.43100713511712	5.90963677458926	5.79913925252207	5.85734536087566	-0.927964929387397	0.00109972102145817	0.0193867768545532
Merged-chr5-35106142-3	chr5	35105668	35106668	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-471.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	5.14453307972286	5.20926706055527	5.23663448540565	4.9638331914055	5.14102292873215	5.17192965076057	-0.208521052450786	0.560604866149236	0.865261302076164
Merged-chr2-27306911-3	chr2	27306412	27307412	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	L1MD|LINE|L1	-59609.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.91626849930199	4.27834574326052	4.14124418025403	4.18849781491	4.12093545945575	4.01601326349773	-0.0247103244079958	0.959979288335756	0.990335445597503
Merged-chr8-39656589-1	chr8	39656089	39657089	+	714.0	f0_balb.idr	Intergenic	Intergenic	-13911.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.09769792945015	3.19062702099835	2.92961760996237	2.95965080621791	2.72744780657211	3.18046593461231	-0.538064465512057	0.457605876248773	0.812373447305312
Merged-chr4-117019421-4	chr4	117018930	117019930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355225)	promoter-TSS (NM_001355225)	28.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	4.86354146011844	4.79184662633382	4.69675640051809	4.52275327008353	4.70904379756764	4.5994652927163	-0.405406766518699	0.318731217984253	0.712710233515729
Merged-chr3-69126052-4	chr3	69125532	69126532	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	1060.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	7.43492797077078	7.8615320311423	7.23440369484284	7.52769639417023	7.66508646403654	7.59625004223113	0.0736785177873622	0.780879493346558	0.946078518476608
Merged-chr4-11489250-4	chr4	11488749	11489749	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081183, intron 1 of 24)	intron (NM_001081183, intron 1 of 24)	3291.0	NM_001347055	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	3.75929258723484	3.61386565815397	3.82287229778266	3.86523044293673	4.10985811823063	4.03817535048954	0.885417762906424	0.0890707256055728	0.396522226536221
Merged-chr5-135149137-2	chr5	135148637	135149637	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-574.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	7.03630468372113	7.34502447369017	7.32400260307534	7.50026412196623	7.58798991274003	7.44561855559065	0.406645622646246	0.0893346670372378	0.39703456962794
Merged-chr2-77946485-4	chr2	77945977	77946977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290740)	promoter-TSS (NM_001290740)	-121.0	NM_030560	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	7.45939521725836	7.80749295448053	7.14792502082195	7.73456998604107	7.89246616000368	7.34405092707965	0.254142223552514	0.378609707582126	0.761079326178183
Merged-chr10-117281114-2	chr10	117280614	117281614	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	1158.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	6.81570045076473	6.486841327588	6.08032366057266	6.55248375859764	6.61640083235998	6.2791137453988	-0.0172027538009377	0.957070500793773	0.989887454023164
Merged-chr2-129634965-1	chr2	129634465	129635465	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	39503.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.3823825988152	3.18488927940056	3.27139571740308	3.39195904131042	3.4260279657897	3.50957751695068	0.618954117506879	0.304542389346774	0.700969682849711
Merged-chr2-31068249-2	chr2	31067749	31068749	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	28251.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.00579374343697	5.16229281127651	4.86298288458649	4.82666790303093	4.7603750835679	4.45653254593948	-0.71812269516725	0.080499011641405	0.375478544798365
Merged-chr3-132154449-3	chr3	132153956	132154956	+	970.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	69164.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.93230943147616	4.11125657740757	3.97806979366724	3.99755375448753	3.91914179710578	4.14048910835541	0.00875155978552257	0.985898347048825	0.996977600359987
Merged-chr7-30232260-1	chr7	30231760	30232760	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001360648)	promoter-TSS (NM_001360648)	-63.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	6.84533151873178	7.01425184481828	6.96245717820085	6.91914735567297	6.8056337393058	6.45108852746768	-0.296702769567033	0.270598574710539	0.667629387731657
Merged-chr4-134760998-5	chr4	134760515	134761515	+	901.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6989.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	6.39291725403279	6.26738166340527	6.35165150203742	6.50425715416548	6.4812640579253	6.41143818771106	0.214637323501068	0.419689136060227	0.789150628972688
Merged-chr19-59072048-4	chr19	59071545	59072545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4024.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	5.20219688293934	5.55465318848517	5.06780503640928	5.07453087225707	5.34080384517453	5.33427105690289	-0.0936949635091911	0.80350228824815	0.953504424667369
Merged-chr2-102057575-1	chr2	102057075	102058075	+	633.0	f0_balb.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	128885.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.54856786537473	2.79495903521932	2.63058978441371	2.40913130877372	2.31112355659753	2.37788124131117	-1.95037997425153	0.0230063637641065	1
Merged-chr8-105859280-2	chr8	105858780	105859780	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1253.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	6.6790403799216	6.66633589538113	6.84023352125627	6.98057661247438	7.24915243681707	7.06319376026148	0.588988148768981	0.0192470050329397	0.157442469011094
Merged-chr18-77063576-1	chr18	77063076	77064076	+	615.0	f0_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1632.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	2.65877552052006	2.75770675764351	3.01725132647627	2.90280443205003	2.67596664867048	2.9754843198506	0.193684852293999	0.79402939078602	0.950531747588938
Merged-chr10-87859641-2	chr10	87859141	87860141	+	809.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111275, intron 1 of 3)	intron (NM_001111275, intron 1 of 3)	589.0	NM_010512	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.12934272228988	7.61770942078101	7.12926706482078	7.58930426264581	7.88197113157543	7.27583416967751	0.430444659506579	0.136417812395041	0.493460020207543
Merged-chr16-3246443-1	chr16	3245943	3246943	+	938.0	f1_balb.idr	Intergenic	Intergenic	-345955.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	3.20012319161291	3.1736170312421	3.49450136825876	2.87159862645239	3.18087123831975	3.46377511313919	-0.416688486330841	0.554511595105366	0.862826181827127
Merged-chr9-58627395-4	chr9	58626887	58627887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 3 of 8)	intron (NM_001357751, intron 3 of 8)	45147.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	4.82005428928204	4.44249790356684	4.83086508788433	4.74467811173799	4.78541466322473	5.1289144681929	0.418490042882471	0.324326782981583	0.717422983792312
Merged-chr11-54091862-4	chr11	54091350	54092350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9074.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	7.40283364809345	7.1158784290888	7.04869680582894	7.31661700036909	7.35916786041272	7.02409344340639	0.0677901787455446	0.792721460729281	0.950032655975256
Merged-chr2-113444006-1	chr2	113443506	113444506	+	785.0	f0_balb.idr	intron (NM_001285459, intron 1 of 16)	intron (NM_001285459, intron 1 of 16)	2942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.62248658708918	4.64997525552385	4.92225781216161	4.52939769836702	4.66247741320434	4.57538096645732	-0.319741300567093	0.442740614202797	0.803309923833629
Merged-chr1-162571579-4	chr1	162571045	162572045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	CpG	717.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	8.77782874450656	8.87399191637255	8.53842063996938	8.71840742572752	9.05461601001118	8.43453803239819	0.037735162231141	0.879674494524603	0.972196331768953
Merged-chr13-105306196-3	chr13	105305704	105306704	+	796.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11719.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.54102729891392	3.45195289046806	3.76350098421888	3.59489481882377	3.42854969388902	3.73492193832174	-0.000249896955885267	0.999654481633787	0.999920050950963
Merged-chr3-31134845-4	chr3	31134337	31135337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-15083.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	6.53933707385673	6.18873094378996	6.58437123376483	6.51265521930183	6.61042196533259	6.78241577285857	0.309004991636925	0.274891231192622	0.672250812190037
Merged-chr10-10474067-1	chr10	10473567	10474567	+	674.0	f1_balb.idr	Intergenic	Intergenic	-1753.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.72926659506106	5.14228887721637	5.13616169292522	5.10223299383386	5.21163770256716	5.49372076929333	0.535577759253346	0.170354146736838	0.547755925561434
Merged-chr9-116077665-4	chr9	116077172	116078172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	97691.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.11861066807226	4.15745413643561	4.4125909929423	3.97537733124666	3.90259624838924	3.94409991716185	-0.839947032097775	0.0877013332903262	0.392821905604859
Merged-chr1-155810243-3	chr1	155809752	155810752	+	691.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	2647.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	3.04149478628021	2.90361985134556	3.07002929601547	2.67084561386694	2.58961818806504	2.7221678902543	-1.90436986873116	0.0124617313482069	0.11737782907195
Merged-chr13-51741023-4	chr13	51740528	51741528	+	940.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	52719.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	2.53840608911928	2.39461693733079	2.75509393865678	2.56673974742378	2.4847641433475	2.76901360903683	0.236828874347385	0.76730371031668	1
Merged-chr17-15829371-1	chr17	15828871	15829871	+	564.0	f0_balb.idr	Intergenic	Intergenic	-2785.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.80434631806661	2.76234218710607	2.81509243688008	3.09426073125018	2.76874649193692	3.01051142472603	0.828766701268354	0.24661655724816	0.643759270156384
Merged-chr7-118740709-4	chr7	118740233	118741233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027815, exon 1 of 31)	exon (NM_027815, exon 1 of 31)	462.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	7.39842708505593	7.60281990685075	7.32289089317579	7.6784231632847	7.51390296808485	7.68192010347366	0.249655025723708	0.284807593535956	0.682457480121006
Merged-chr6-114395520-4	chr6	114395000	114396000	+	910.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2436.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	3.47591896116579	3.66512961389208	3.88612056469232	3.24438873143543	3.15253644738988	3.2911826270444	-1.78003696607427	0.00467187533850553	0.0584391766636151
Merged-chr9-124071704-4	chr9	124071208	124072208	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30475.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	5.43109815009079	5.45348359721224	5.66938854667616	5.63281956987993	5.42748715933447	5.62644336587398	0.0860762581273766	0.79478245865329	0.950867819055357
Merged-chr2-68435768-1	chr2	68435268	68436268	+	557.0	f0_balb.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	36213.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	5.17277198569758	5.02141921940797	5.12240801847506	5.49956109242364	5.46243781209045	5.11687896661929	0.555463590937433	0.123582028460278	0.470544707581506
Merged-chr4-108428460-4	chr4	108427940	108428940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21727.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	4.00461875161815	4.07729523630037	3.84842284561169	4.05508995200482	4.14785775629579	4.16647899294486	0.395385714876097	0.419752597092489	0.789234286140729
Merged-chr10-117417518-4	chr10	117416992	117417992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29943.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	7.62566539434764	7.49310002931932	7.2801753754308	7.42447954552475	7.67181395910073	7.16300410565043	-0.0475018032100822	0.855701359751318	0.966244542232428
Merged-chr17-28693293-4	chr17	28692802	28693802	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	734.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.56197929752545	6.6262405615525	6.52330861337173	6.43624736132533	6.82155697533279	6.8655253898937	0.233639491258454	0.394823798463726	0.772579826044138
Merged-chr13-81350355-4	chr13	81349843	81350843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	282801.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	4.77443598610533	4.67407567683813	4.61239846823473	4.47190290012131	4.33208381404682	4.51308025258315	-0.636059761018976	0.130858709779453	0.483481706999187
Merged-chr7-144909955-2	chr7	144909455	144910455	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5145.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	3.00917259975309	3.28381507431336	3.51986028597162	3.05375539548053	2.94419877538509	3.38796412702855	-0.605829777014532	0.385124202228231	0.76623192225821
Merged-chr9-124103432-4	chr9	124102910	124103910	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009915, intron 1 of 2)	intron (NM_009915, intron 1 of 2)	1227.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	4.73529718390578	4.62250467279549	4.80164154508648	5.24035988646802	5.02602567884206	4.78912633806054	0.713699378237938	0.0733777203196843	0.355908676908207
Merged-chr2-131909935-4	chr2	131909452	131910452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011170)	promoter-TSS (NM_011170)	24.0	NM_001278256	19122.0	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	4.94627000969205	4.78584141886081	4.53417149767667	4.57206727731074	4.59254127199067	4.37171087127412	-0.598799479294829	0.165061580796093	0.539748644772511
Merged-chr1-36962443-7	chr1	36961963	36962963	+	971.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22936.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.12325228919376	6.00181892474882	5.78809272536874	6.14413389202462	5.92840622512462	5.65404998077878	-0.0937238180506075	0.771129807620785	0.943576844936255
Merged-chr18-80934938-2	chr18	80934438	80935438	+	889.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	-880.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	2.9291547837225	2.88176367879857	2.91380086419823	2.9909231259484	2.79629472714088	3.47642481759569	0.919550123748278	0.211281174521341	0.603801482675221
Merged-chr2-117412311-4	chr2	117411909	117412909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69532.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.29630485787579	4.01077315739368	3.94336796422801	4.32925627628572	3.95818488390539	4.1149116769259	0.118339578964736	0.815398296470488	0.956370078970016
Merged-chr3-139049062-4	chr3	139048594	139049594	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	26107.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.46040353743643	5.80474482079937	5.86278563245532	5.50161283194317	5.60581000120707	6.17349411703135	0.12120584723343	0.741018938902459	0.934742147011145
Merged-chr7-28374872-4	chr7	28374356	28375356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2194.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	6.77421993668289	6.74526531800841	7.050768163576	6.90299834566877	7.12505515232548	7.00502954257537	0.249538056720911	0.330000580200788	0.72162759463583
Merged-chr16-33530768-3	chr16	33530271	33531271	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12176.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	7.68070613152258	7.92381634445322	7.04853372110121	6.55107720793723	6.75573700411188	6.22360367817433	-1.61571365185582	8.08073312299158e-07	4.50054646384125e-05
Merged-chr16-92301657-2	chr16	92301157	92302157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138743, intron 1 of 3)	intron (NM_138743, intron 1 of 3)	354.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	5.62415131932715	5.62515186239037	5.85810126030219	5.64212556055051	5.45769181143727	5.5896194662887	-0.256456255228886	0.427161104790548	0.794102218713822
Merged-chr10-118803905-2	chr10	118803405	118804405	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64998.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.97973997059684	4.69089992879342	4.97237852114046	4.77394210171451	4.7486602333019	4.61745257154158	-0.371728795062579	0.356593639517903	0.743348418397567
Merged-chr11-94343862-2	chr11	94343342	94344342	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 30 of 30)	intron (NM_029600, intron 30 of 30)	15841.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	2.63541824563608	2.55867060839871	2.99132740546832	2.41437057060501	2.47970173608622	2.89769420733604	-0.677166925112912	0.420649762362786	0.789802348657862
Merged-chr7-90442754-4	chr7	90442299	90443299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	18.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	8.487218956887	8.02529710078895	8.06294870414095	8.28627868715129	8.04101486160913	7.80841719441922	-0.210005371844332	0.415636869822145	0.78656116488557
Merged-chr19-57611775-4	chr19	57611305	57612305	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181415, intron 1 of 28)	CpG	771.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	5.09430603471383	4.72068453409507	4.91676631716458	4.71998957932671	4.34976749724218	4.41345870708083	-0.97655946861048	0.0244391898032707	0.184280571377485
Merged-chr8-119823827-2	chr8	119823327	119824327	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	B4|SINE|B4	16752.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.28974145015818	4.1650981993962	4.35023619843608	4.34953789398026	4.04700288917312	4.14656313590144	-0.224345059260234	0.634104521660268	0.89628608137371
Merged-chr7-90133471-4	chr7	90132976	90133976	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	3263.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	7.5579073195488	8.23214690101486	7.59120215123533	7.56185534815255	8.03294810091661	7.46147332225792	-0.174975958070891	0.56487499019005	0.866552670637515
Merged-chr13-52071373-4	chr13	52070856	52071856	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25385.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.52608243183977	3.41156709477893	3.39943277226072	3.81161907539245	3.77743946571022	3.69663329161608	1.11058494606919	0.0482299325016329	0.278450160304365
Merged-chr19-36347545-3	chr19	36347093	36348093	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31474.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	3.34400936467725	3.17867284165266	3.20092433030118	3.28543602109838	3.2352048822413	3.38552883388051	0.221028519688716	0.720569417461515	0.92824405635586
Merged-chr8-123224849-4	chr8	123224337	123225337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194446)	promoter-TSS (NM_194446)	-4.0	NM_194446	234854.0	Mm.190984	NM_194444	ENSMUSG00000033862	Cdk10	BC017131	cyclin-dependent kinase 10	protein-coding	6.10346930323362	6.21341103690617	6.54312222277789	6.33242750660933	6.52212548251531	5.95483303973887	0.0214397193641852	0.946490766755884	0.988002063841177
Merged-chr1-170924712-4	chr1	170924207	170925207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160215, intron 1 of 4)	intron (NM_001160215, intron 1 of 4)	2876.0	NM_145141	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	4.7851316824165	5.25566558837621	5.15854390000782	5.09275689221364	5.22258454361563	5.18989202334477	0.185178036774659	0.628644493820991	0.893806726276115
Merged-chr12-11196932-2	chr12	11196432	11197432	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131084, intron 2 of 4)	intron (NR_131084, intron 2 of 4)	7570.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	2.16404125813165	2.02934498965093	2.19433577661884	2.03175422005914	1.79720509389084	1.85832951113369	-2.0274919156975	0.0559386316835547	1
Merged-chr14-73327008-2	chr14	73326508	73327508	+	895.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	3.63928560280207	3.7496624891542	3.7514246987123	3.83231339420753	3.68442589705608	3.96702415900195	0.365651072812644	0.493165728798543	0.831208279358962
Merged-chr3-115887913-4	chr3	115887451	115888451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027193)	promoter-TSS (NM_027193)	108.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	8.03919463528886	8.03583130958387	7.92506842027679	7.96192870186487	8.05741652388073	7.42640953098753	-0.210454846738109	0.412381460442341	0.784461927725322
Merged-chr19-44343681-2	chr19	44343178	44344178	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183216, intron 5 of 5)	intron (NM_183216, intron 5 of 5)	10352.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	4.67909126105003	4.87641818080579	4.78759515002261	5.00440536349285	5.01427753619236	5.10345173652882	0.55863903857201	0.142746832606884	0.504317189519089
Merged-chr4-124703965-7	chr4	124703542	124704542	+	849.5618900000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	3343.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	5.7092212150184	5.62802333010218	6.07348746926806	5.42402562751776	5.11243397282896	5.46596637952638	-0.897292273879103	0.0112633014478804	0.109383378486839
Merged-chr4-126220503-2	chr4	126220003	126221003	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-17793.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.76841619711909	3.77899918599748	3.86308708537111	4.06505047337478	3.98796782282336	4.07758189247117	0.743042004204208	0.138009413414044	0.496518820103586
Merged-chr11-70650595-4	chr11	70650100	70651100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316728, intron 8 of 9)	intron (NM_001316728, intron 8 of 9)	3313.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	4.57265626734519	4.38059383601669	5.08791539622173	4.78154220332499	4.61547579377482	4.62907412881257	-0.0591626971247893	0.896851619636766	0.97587199430405
Merged-chr4-3229727-2	chr4	3229227	3230227	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44422.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	3.19151730161105	2.89531739342738	3.33970535709021	2.87932630412925	3.03740147524533	3.25117232334643	-0.389887110536724	0.579192244816389	0.872437416842052
Merged-chr10-118111473-1	chr10	118110973	118111973	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-30314.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.64129543990473	2.72374091873069	2.79817618436185	2.71608265928051	2.69416248646636	2.68641924083465	-0.11110381517629	0.879437473799861	1
Merged-chr13-119818029-4	chr13	119817537	119818537	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	12180.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	4.08406524242572	4.40545146103783	4.57258258845581	4.3963834316842	4.49882303842057	4.67572712129322	0.412012452028308	0.372703304342786	0.756537953227832
Merged-chr10-57760909-4	chr10	57760389	57761389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24034.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.92384399609524	6.93728834165863	6.72277884192713	6.46551606101111	6.78213304176481	6.28086052454493	-0.51422414866945	0.0705188794414816	0.348051683748595
Merged-chr11-69580340-4	chr11	69579848	69580848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011640)	promoter-TSS (NM_011640)	-11.0	NM_011640	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	7.8184705869925	7.70512919740054	7.85974765472672	8.02077411761239	8.2552509814556	8.17561085971313	0.515202470711601	0.0174896713360492	0.147654278868707
Merged-chr15-80225397-4	chr15	80224869	80225869	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8711.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	2.90195694014357	2.64410142063423	2.87494224949781	2.87586346853235	2.88295611318212	2.62857443014104	-0.027679236036897	0.970746257096642	0.993560292853483
Merged-chr18-53251729-2	chr18	53251229	53252229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ID4_|SINE|ID	6067.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.93618474686486	6.01473548466042	5.83574756220992	6.03604403677391	6.03034969132549	5.73825607641748	0.0277228773919494	0.927431965264652	0.983584626679457
Merged-chr5-143065378-3	chr5	143064884	143065884	+	889.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	47636.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.20728263658315	4.95806957231941	5.62567672436555	5.01872887020185	5.34238352809138	5.68670720374843	0.174366391936658	0.674292362881423	0.911841916826811
Merged-chr12-79319983-2	chr12	79319483	79320483	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	intron (NM_009014, intron 5 of 10)	22632.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	5.70160779648816	5.7710168829531	5.29207415047208	5.93813943845568	5.93926357786555	5.42663605999906	0.333830101217855	0.355636301376184	0.742489966989298
Merged-chr8-117306796-2	chr8	117306296	117307296	+	742.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-42374.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.91009018396135	4.12460344228575	4.15105999692186	4.32870726036919	4.32541199201866	4.30989700123257	0.720254703401298	0.12462390993644	0.472306664538883
Merged-chr1-151346938-2	chr1	151346438	151347438	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	intron (NM_001039511, intron 1 of 7)	2440.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.95653163682101	3.88239634261173	3.99966544526518	4.12970464000664	3.81518688234063	4.06830328511804	0.18295097164308	0.717597211460046	0.927113669510706
Merged-chr2-181659804-4	chr2	181659345	181660345	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11795.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	3.25748873471445	3.37572009845353	3.36556776004826	3.35861091682878	3.16240545836462	3.08316258545069	-0.508070679777157	0.422069550889651	0.790981152937525
Merged-chr19-29366367-4	chr19	29365867	29366867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	7.72053180627085	8.02863300019516	7.68040518361709	7.77298530935106	8.34641391241516	7.49569019924298	0.158680527466567	0.591754393754496	0.877726471452175
Merged-chr1-180231833-4	chr1	180231335	180232335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 7 of 10)	L1MB3|LINE|L1	14115.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.47402774634925	3.55899655233833	3.30942807478999	3.59819827931559	3.23835038423692	3.75835765538822	0.316303088031405	0.612884416599283	0.886969289870611
Merged-chr2-5614949-6	chr2	5614355	5615355	+	840.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	61191.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.97138797027224	5.64226275716153	5.62280658492203	5.57491484995869	5.38205401919568	5.42023852778956	-0.561850936919673	0.0931485334067595	0.406562272750191
Merged-chr13-37325685-4	chr13	37325170	37326170	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19675.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.82223498433552	2.57769974358207	2.72741271766293	2.81196293712219	2.60016847253525	3.09315543762259	0.672164718222762	0.384419776113244	0.765526696623039
Merged-chr10-111119424-4	chr10	111118922	111119922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45380.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.66349115365185	4.74980675642254	4.69864819455329	4.66596786105308	4.58490863457556	4.83893895268902	-0.0322828422995741	0.936439077485614	0.986037792257163
Merged-chr1-92906138-4	chr1	92905626	92906626	+	779.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-863.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	4.19487443956049	4.21620710993714	4.18263942786907	4.7067187460015	5.05685440416945	4.92086835579311	1.74948955222572	6.23671825197356e-05	0.00190578351931772
Merged-chr9-124312282-3	chr9	124311795	124312795	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243117, intron 1 of 4)	intron (NM_001243117, intron 1 of 4)	399.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	8.0038707456591	8.43264580934323	7.99687619896305	8.21351232780397	8.36304721746172	7.95195301433794	0.0370102512083324	0.883057691963535	0.973347392063704
Merged-chr4-151842812-4	chr4	151842324	151843324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	18944.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	6.1260108886401	6.57310447917918	6.35400470628008	6.32944768636886	6.23494204079453	6.55549462731988	0.00804646805247643	0.978443012814355	0.995146803081243
Merged-chr12-99975231-3	chr12	99974737	99975737	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10738.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.07816427583313	5.87075730997718	5.75078601428694	5.71871123483771	6.13692921738552	5.93874139918039	0.0639541021514832	0.842268407054912	0.963002495523594
Merged-chr13-34256818-4	chr13	34256307	34257307	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	L1MB1|LINE|L1	88375.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.92265590020301	5.99469179530308	5.49192690822611	5.61317352170377	6.02499307442011	5.7856160552666	-0.0126798858686903	0.970511350900152	0.993498134685548
Merged-chr10-6715813-4	chr10	6715323	6716323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-42770.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	5.21943107208246	4.7828516041114	4.80620767442895	5.10668741431837	4.86239958224655	4.87292957665244	-0.0154330693009194	0.969670664791356	0.993198925979166
Merged-chr5-135479389-4	chr5	135478880	135479880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	65742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	7.47681234732967	7.42440147155819	7.32115060212825	7.08278040427527	7.44143845925005	7.25172425017631	-0.206143528273084	0.396739930594445	0.773734965167923
Merged-chr1-34828887-2	chr1	34828387	34829387	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	14163.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.67875043905064	6.06517392309415	5.75210768321601	5.68218614181347	5.74563182919194	5.6236599209469	-0.290358395662611	0.369086260234522	0.75384593489271
Merged-chr6-114258420-2	chr6	114257920	114258920	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24215.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	7.00964375665192	6.4783905744116	6.34048780177843	6.63596544432923	6.68915803347438	6.51737696557813	-0.054460654425764	0.858717699979164	0.966967311483659
Merged-chr2-153076032-5	chr2	153075542	153076542	+	837.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	intron (NM_145536, intron 6 of 8)	10087.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	4.78107786547797	4.29295859835942	4.5433299986988	4.72990033757216	4.98072302848018	4.99089053786185	0.806841342395603	0.062708908805201	0.325608916309714
Merged-chr4-40313202-4	chr4	40312697	40313697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040663)	promoter-TSS (NR_040663)	-35.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	3.60921338644555	3.61559412095006	3.57507531092771	3.60904170858524	3.68970966710782	3.53547595925186	0.0589182327883555	0.915211235543052	0.980959026698783
Merged-chr10-39415776-4	chr10	39415274	39416274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MIR3|SINE|MIR	45975.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.41478625406184	5.56055665568007	5.40058652063864	5.42800182883599	5.18591478226554	5.02189610887616	-0.464043791469698	0.191901054143636	0.578791609148312
Merged-chr10-84439714-2	chr10	84439214	84440214	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	757.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.31877838847171	4.36659107660175	4.34343865765242	4.50177833576759	4.33888954981422	4.17750890031571	0.0216055719642241	0.961822121046145	0.990684873115088
Merged-chr8-111937322-4	chr8	111936831	111937831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-3372.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	4.56580321360437	4.58228433607923	4.48678324785046	4.70135124404529	4.67117521645004	4.75639416579961	0.377996651642845	0.353898912063263	0.741027381084777
Merged-chr8-22838900-4	chr8	22838391	22839391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-20648.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	6.73711145096465	6.88157330926369	6.77916758547877	6.65372915115952	6.60767540489514	6.63074649734228	-0.27094940552926	0.280873023441824	0.678974905787485
Merged-chr11-99182678-4	chr11	99182206	99183206	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27629.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.70452701326441	4.55346399848792	4.94956346404895	5.24689518817932	4.6264225111718	4.7946911800341	0.401618726225943	0.361230523923113	0.747169629644794
Merged-chr4-126431159-2	chr4	126430659	126431659	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	5.147412776912	5.05321402261548	4.87786186495005	5.0180743904178	4.99779269221565	5.28407391170494	0.122484302334972	0.745409288138185	0.936169170413447
Merged-chr17-29434799-4	chr17	29434294	29435294	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56251.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.59689157062485	4.26657862378993	4.45148783179983	5.28503821154885	5.08615352549571	4.65748404244568	1.3750636362018	0.00184279946530375	0.0289914270956693
Merged-chr2-25451376-4	chr2	25450859	25451859	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5484.0	NM_027085	69454.0	Mm.44194	NM_027085	ENSMUSG00000015093	Clic3	2300003G24Rik	chloride intracellular channel 3	protein-coding	3.99136094716382	3.91699153225026	4.21615981731446	3.93921360056858	4.10402644642643	4.00961253781081	-0.0466644270493361	0.925252179199191	0.983166193538686
Merged-chr11-80052360-1	chr11	80051860	80052860	+	548.0	f1_balb.idr	intron (NM_018776, intron 6 of 7)	MTD|LTR|ERVL-MaLR	28631.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	3.91855440529891	3.75109949066721	3.93155743063741	3.83812664468988	3.79565168058388	4.04660176924063	0.0749935022416629	0.884712420572205	0.973538624783452
Merged-chr11-97556250-2	chr11	97555688	97556688	+	937.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	18938.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	4.60318865627949	4.53540891944811	5.3231140647937	4.99650763350632	5.25081583809204	4.90777614379606	0.441706993750107	0.332170412588396	0.723387053255178
Merged-chr3-145938827-2	chr3	145938327	145939327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151446, intron 2 of 3)	intron (NR_151446, intron 2 of 3)	813.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	5.52626936393643	5.03418983112631	5.24026735824836	5.51837009517906	4.73227526935787	5.53833199957362	0.049718713369302	0.909496682901166	0.979506123164556
Merged-chr5-142462908-2	chr5	142462408	142463408	+	863.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199068)	TTS (NM_199068)	-1023.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	4.22235273751562	4.18355753910282	4.17023461043189	4.27398339664007	4.27771772610462	4.61448924142894	0.521511368416285	0.260127754867465	0.657649400461384
Merged-chr10-41571705-2	chr10	41571205	41572205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	B4|SINE|B4	3689.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	4.32107545965895	4.28386887177375	4.23519786671545	4.72537755584675	4.86229418082599	4.81252697891499	1.28084311844673	0.00252853804508598	0.0370566865406139
Merged-chr2-103656151-4	chr2	103655648	103656648	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89838.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.50106700513654	4.19427052660234	4.23041312498414	4.24183307615551	4.21557911179468	4.05450603005913	-0.384032682640701	0.418009471229539	0.788473936634102
Merged-chr9-50944926-4	chr9	50944366	50945366	+	859.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	Lx7|LINE|L1	64207.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	5.09948444594044	5.29700704687525	5.42605906051203	5.05659244351849	5.31815950859645	5.46028041848178	0.0210585235354593	0.954050758536591	0.989495550016789
Merged-chr11-57519370-5	chr11	57518796	57519796	+	845.5047609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	631.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	5.9845510640678	6.03190890619211	6.35456791843561	6.5210156002937	6.28567870876335	6.2184092533461	0.381221299108166	0.19916757928449	0.587546477242568
Merged-chr7-126144000-4	chr7	126143485	126144485	+	728.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	intron (NM_028816, intron 8 of 23)	56516.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	6.6194404189625	6.50905287986432	6.63546340650013	6.52338907392537	6.8242665160135	6.62832905112488	0.135109866015977	0.610557502324556	0.885668247317778
Merged-chr1-120258982-2	chr1	120258467	120259467	+	744.875	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	6313.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	2.53592850860395	2.59908383815304	2.84939825301499	2.55282553341099	2.42576306603775	2.80642308121022	-0.360109857015493	0.652425295230915	0.902986290245403
Merged-chr6-86365572-4	chr6	86365074	86366074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025591)	promoter-TSS (NM_025591)	-109.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	6.52621663438386	6.48001109378044	6.17358556954911	6.41412674308367	6.56429709217297	6.04729423833561	-0.0611354726162662	0.840925551441239	0.962832831784718
Merged-chr12-4213058-2	chr12	4212558	4213558	+	554.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361641)	TTS (NM_001361641)	20907.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	2.97012900711336	3.00872512080401	3.36241997166165	2.80702549705975	2.89172250249982	2.9979703381112	-1.0231087916673	0.148422922569704	0.513953991981574
Merged-chr3-96230616-4	chr3	96230107	96231107	+	917.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	8520.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	2.87585829591742	2.73974764622429	2.51860467924527	2.88954179646377	2.65966818537071	2.91804429541165	0.519054894791776	0.510024422248334	0.840641644245377
Merged-chr14-122261444-4	chr14	122260954	122261954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-27816.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	4.25102147869576	4.4507433162444	4.54319496980346	4.43624660796297	4.5215103502562	4.52842349749488	0.206391763512472	0.63588272806976	0.896829421389054
Merged-chr3-136329219-3	chr3	136328734	136329734	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	4.6634755871252	4.75605735997007	5.39463300779242	4.70778641076542	5.02321528354052	5.01244267939971	-0.0982889870276364	0.824958195905786	0.95862923400744
Merged-chr5-137338853-3	chr5	137338368	137339368	+	765.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2008.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	3.50314099114895	3.69110344465358	3.83362732601129	3.53802945030596	3.32027808604659	3.80760263211496	-0.407631884555816	0.493986748184546	0.831788273897921
Merged-chr8-86921107-4	chr8	86920579	86921579	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35821.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.70227456417803	2.65638651011012	2.92855293841261	2.58122596996022	2.45560923740044	2.6445642399629	-1.16542654383623	0.136000218176949	0.492905159738987
Merged-chr8-25199386-2	chr8	25198886	25199886	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	PB1D10|SINE|Alu	2156.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	2.94196753119185	3.04388073997539	3.02414863440204	3.03444499153462	3.11875042846878	3.15455426024244	0.447835028861873	0.495286308133228	0.832471821048303
Merged-chr15-93298392-4	chr15	93297916	93298916	+	797.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	intron (NM_024189, intron 2 of 3)	-23237.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.78703588566993	3.62770827118473	3.58863122839133	3.62176552062809	3.68334354580313	3.43128959413911	-0.28970926758891	0.610490440525604	0.885618453459863
Merged-chr13-46786168-1	chr13	46785668	46786668	+	786.0	f1_balb.idr	intron (NM_010617, intron 24 of 37)	ORR1A4|LTR|ERVL-MaLR	-58319.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	1.98581462472055	1.92000380663278	2.15230004478977	1.93788270283268	1.82221415963885	1.96313059194317	-0.942103588345926	0.32987035392967	1
Merged-chr5-45669045-3	chr5	45668557	45669557	+	858.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	651.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	5.14013063407745	5.57659011679703	5.58518068806334	5.28683596753845	5.39973350531133	4.97558281615471	-0.39674881939119	0.299138037609471	0.695950729299843
Merged-chr11-116854369-1	chr11	116853869	116854869	+	615.0	f1_c57bl6.idr	intron (NM_178620, intron 1 of 12)	intron (NM_178620, intron 1 of 12)	369.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	7.36054109049579	7.70133916009492	6.97473450601755	7.38351904089704	7.69619407337647	7.01837360328156	0.0242968164526812	0.937719259545934	0.986132276939678
Merged-chr13-33045863-3	chr13	33045383	33046383	+	611.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18469.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	3.0196996946721	3.48601640974364	3.14122221388566	3.42603413537828	3.55406655352708	3.50588564575452	0.994776299286296	0.133500232461347	0.488698683323101
Merged-chr7-25682075-2	chr7	25681575	25682575	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	L2a|LINE|L2	917.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	4.86770951422206	4.62724011656232	4.97513672923313	5.05049692608079	4.86131971931171	5.10617458698034	0.396960037633364	0.314092515287094	0.708496259271539
Merged-chr11-103247747-4	chr11	103247246	103248246	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	19655.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	5.91955511861673	5.84113292703531	5.95958459090737	5.44775038668154	5.96796113012124	5.92880159689248	-0.17661719702377	0.592421364304293	0.878027089897609
Merged-chr7-27357606-7	chr7	27357079	27358079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199236, intron 18 of 18)	intron (NM_001199236, intron 18 of 18)	-1571.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	6.80645252385276	7.17983315524753	7.22976104427072	7.16872458858145	7.25387192231385	7.36407136860748	0.271610307278973	0.290926673397138	0.688708829270508
Merged-chr16-30689852-3	chr16	30689364	30690364	+	760.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	90141.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.48386210875265	4.42432716349405	4.57255203815291	5.88147788841022	6.09624469262886	5.74200169588264	3.01771104143508	3.73139067914446e-15	1.0453924431995e-12
Merged-chr7-127422037-4	chr7	127421524	127422524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026999)	promoter-TSS (NM_026999)	10.0	NM_026999	69234.0	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	5.90856872363347	5.93213070179397	5.99188479960492	5.83558292368699	6.00270253449996	5.81180869647629	-0.083987530652317	0.778133681840022	0.945414788336538
Merged-chr14-61689022-2	chr14	61688522	61689522	+	761.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6649.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.92558178420525	4.3317124335603	4.51622559594746	4.38851887752947	4.47586781409424	4.21412936168764	-0.619654578255391	0.193324126824459	0.58042547704774
Merged-chr11-32536376-2	chr11	32535862	32536862	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	B4A|SINE|B4	3096.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.54197080954174	5.58617893985714	5.61135459223823	5.53325552506326	5.48582076957522	5.10090370579218	-0.339815050972386	0.326132242629283	0.718551386027045
Merged-chr6-35539231-2	chr6	35538731	35539731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	CpG	657.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	6.7415886714429	7.31662310223495	7.18327018085838	6.80865343800126	6.89029424708864	7.27459693356822	-0.155575818800847	0.596261066127466	0.879909387076956
Merged-chr7-127931718-4	chr7	127931218	127932218	+	883.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001319147)	TTS (NM_001319147)	-1605.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	4.03466699586026	4.10440996345599	3.98297855794978	3.68622895042945	3.49653118163137	4.00446913962398	-0.986040628792668	0.0722701302860802	0.353157446871531
Merged-chr8-94098502-4	chr8	94098000	94099000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026116, exon 1 of 17)	5' UTR (NM_026116, exon 1 of 17)	311.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	6.67510865290952	7.04754841310868	6.66875815233413	6.55070031978166	6.53825238366123	6.52121672141309	-0.441807209847871	0.104362232328876	0.430999237027056
Merged-chr15-7906676-4	chr15	7906161	7907161	+	937.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 13 of 17)	intron (NM_001081402, intron 13 of 17)	91111.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.83950274434636	4.28818623137799	3.93908805173062	3.67884318657781	3.41396014610994	3.39531958418695	-1.81295358086211	0.00230509937166493	0.03445351329576
Merged-chr6-82995285-2	chr6	82994785	82995785	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	38186.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.04039102118731	5.97688691237486	5.44669811148573	5.74358361177392	6.10194543341428	5.37579672947555	-0.120315804802338	0.753655162193185	0.938570691167124
Merged-chr17-87331294-4	chr17	87330788	87331788	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 10 of 19)	intron (NM_028639, intron 10 of 19)	48402.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	2.72595217700222	2.54874847374065	2.92325467436625	2.46217524214094	2.40560182864024	2.82483980728749	-0.916884662076897	0.267707025958926	0.664956154392379
Merged-chr6-120451672-4	chr6	120451171	120452171	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11526.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	2.96479289023077	2.78791444867866	3.20754643398551	3.03520482339947	2.88664521411759	3.11319924324202	0.0896347298610467	0.898464104586164	0.976355113798855
Merged-chr2-168473083-3	chr2	168472629	168473629	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117236.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	4.16665419643516	4.60264043815353	4.08032061927717	3.59227523365692	3.26302035695876	3.61676481424937	-2.81250225198394	5.07163463753368e-06	0.000224349056310421
Merged-chr3-14832981-3	chr3	14832461	14833461	+	969.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24596.0	NM_009799	12346.0	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	4.03194088147854	4.32972408508278	3.86003433858397	3.5319040027511	3.62450062849647	3.71672911267353	-1.52460274465199	0.00590049318919211	0.0689434135651857
Merged-chr3-105981185-2	chr3	105980687	105981687	+	726.25	f0_balb.idr|f1_balb.idr	intron (NM_007696, intron 8 of 10)	intron (NM_007696, intron 8 of 10)	7385.0	NM_007696	12659.0	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	4.5252553982268	3.97151288432732	4.47220382968055	3.48576737872618	3.48792163214876	3.72111723958096	-2.54890414815448	1.46282371072135e-05	0.000555897485958121
Merged-chr2-90560487-2	chr2	90559987	90560987	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	20160.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.90476447845948	5.85294569235602	6.15534184942968	6.00162441729312	6.21178165003549	6.38611828850596	0.404714678429031	0.182778205473803	0.565649158368885
Merged-chr11-83221594-4	chr11	83221090	83222090	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1986.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	4.35487106770926	4.26849750573464	4.39988992140874	4.11544414487285	4.45805115679141	4.19808496927098	-0.166513318255292	0.721079266133837	0.928383418587367
Merged-chr15-101244136-4	chr15	101243618	101244618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18932.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	7.20735328528275	7.04394976115626	7.23976695295548	7.41420855665494	7.6316335881092	7.22559772909038	0.416690217295824	0.0934111344840949	0.407110500636526
Merged-chr19-6292242-4	chr19	6291722	6292722	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-14235.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	7.19770859085451	7.04342629623679	7.17278503439663	6.97694551242479	7.15564893628854	6.8833591492136	-0.180387428384354	0.464067851465128	0.816159912595333
Merged-chr16-91778144-4	chr16	91777657	91778657	+	866.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	48786.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.22220770267121	3.93024515027968	4.37079685945301	4.50204374012992	4.09959830365857	4.39577206283869	0.429176976363018	0.38526281795545	0.76632598385057
Merged-chr11-121746759-2	chr11	121746259	121747259	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44332.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.80514302905842	6.88393241647734	7.14200099561098	6.98967002872356	7.40434687597183	7.2805634945866	0.44699781623503	0.0909153758852163	0.401303822608385
Merged-chr15-76902811-2	chr15	76902311	76903311	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	2.39149876725433	2.50984059476015	2.65855643757157	2.3663286000897	2.07154346182854	2.42260106198484	-1.52848369988109	0.106307033714556	1
Merged-chr3-36319659-3	chr3	36319125	36320125	+	852.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-97350.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	2.9006223132134	3.24280450734669	2.99181210409369	3.06217808440429	3.20675282212205	3.12547801102757	0.334657855516781	0.622942063467681	0.891251075175817
Merged-chr4-141573640-7	chr4	141573096	141574096	+	878.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26328.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	3.49992364507141	3.18904052520209	3.24115057331753	3.26816278765012	3.0993344350311	3.19554050116326	-0.548895252499724	0.391146961226051	0.770205086724028
Merged-chr8-70804130-4	chr8	70803616	70804616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4333.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	5.0076593853114	4.69338528768438	5.13703092388895	4.49530777482597	4.37078916922838	4.56145314111933	-1.13257444154282	0.00784203962902317	0.0848460403589662
Merged-chr16-3718563-2	chr16	3718063	3719063	+	834.916687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-439.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	4.42995400567399	4.5985394522464	4.94875974550643	5.09481816626563	5.17594164235089	5.70620070490172	1.46330201200281	0.00069089157659884	0.0135417106560023
Merged-chr15-40060442-3	chr15	40059932	40060932	+	986.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 2 of 2)	intron (NR_155348, intron 2 of 2)	15244.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	3.17656504269944	2.97999415295221	3.13761642803431	3.31836140101204	3.07870679072335	3.02848443561978	0.216749848881535	0.743802260828675	0.935808433727598
Merged-chr5-114922079-4	chr5	114921580	114922580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1160.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	7.99382409558497	8.21569464268771	7.80784336295999	7.8857670680453	8.35962862927478	7.5264361553385	-0.0553739124275804	0.848587465551615	0.964356989789491
Merged-chr17-43558038-4	chr17	43557526	43558526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10425.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.89711419121068	8.09514768075339	8.0640723955387	7.79738237260815	8.01142098331658	7.65898968492001	-0.259599080750599	0.258791594912606	0.656309997850902
Merged-chr9-32150337-2	chr9	32149837	32150837	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 2 of 21)	Looper|DNA|PiggyBac	34201.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	2.20285940855451	2.16838334778606	2.33867118394562	1.96018282326992	2.2371260225355	2.1543194502693	-0.798662870770661	0.398218391095174	1
Merged-chr19-5803227-1	chr19	5802727	5803727	+	1000.0	f0_balb.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-555.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	8.89239282637106	9.18745467099322	8.74038247169892	8.70586959425729	9.16672765097755	8.88847244169377	-0.0270956425109797	0.910635325775706	0.979930476787866
Merged-chr12-17777201-4	chr12	17776691	17777691	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86382.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.33313419608408	4.20688546144615	4.51828425453022	4.63893437827932	4.54882167257897	4.62451440922316	0.639534973658334	0.140557619594184	0.5008787328134
Merged-chr13-55023391-1	chr13	55022891	55023891	+	657.0	f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	6.84697382332563	6.80224327706518	7.14851552777973	7.00673369647719	7.39747996822835	7.01570150329463	0.34685765829474	0.200295489520845	0.589265180216048
Merged-chr13-24463941-4	chr13	24463421	24464421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 13 of 16)	intron (NM_001111110, intron 13 of 16)	48799.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.65633200482767	5.78350812140765	5.61915124358509	5.91600326415205	6.01721205757261	5.91625695342163	0.466009350462489	0.124575625775342	0.472283974371908
Merged-chr11-73133223-4	chr11	73132709	73133709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	5085.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	7.64039774363239	7.67229308528005	7.19043912557972	7.67550968260029	7.83253053554206	7.64306836779601	0.280271963957003	0.263980587609058	0.661879105198449
Merged-chr7-27239898-2	chr7	27239398	27240398	+	668.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133770, exon 6 of 15)	exon (NM_133770, exon 6 of 15)	6885.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	3.99620902569868	3.48471160329232	4.14026994232563	3.89294861037076	3.6954884955135	3.93671310831887	-0.174666018065771	0.762274703949283	0.941547592462139
Merged-chr5-149679436-4	chr5	149678881	149679881	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	1124.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	2.60095852924556	2.64508565286812	2.6847297527724	2.51424624213662	2.51163888178885	2.50606492602395	-0.777344136925529	0.314396765644564	1
Merged-chr10-93487090-4	chr10	93486434	93487434	+	909.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1834.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	5.03669477541863	5.03380458654174	4.61854264861824	4.19756306577287	3.96548055508025	3.81832946576028	-2.3856059732959	2.45913988811836e-06	0.000119941448892469
Merged-chr11-110538402-4	chr11	110537911	110538911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59071.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.49449033558075	5.64448356547422	5.57576611057464	5.53828961221044	5.54225879129316	5.58255079751793	-0.0391234815727388	0.902646362985486	0.977580005571747
Merged-chr17-25875535-4	chr17	25875056	25876056	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	56.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	5.98939885592287	5.8632571929941	5.80033698749833	5.82536423669377	6.26231865396345	6.05472833840793	0.307034585233388	0.325324612818452	0.718104679754736
Merged-chr1-52166889-3	chr1	52166375	52167375	+	768.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 17 of 17)	intron (NM_001081081, intron 17 of 17)	47253.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.27505203749413	2.31304680501805	2.49656725961837	2.16184983556658	2.29955740691145	2.56972600730446	-0.0718365455627068	0.934316815709776	1
Merged-chr1-24699522-4	chr1	24699016	24700016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	20598.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.73032161080678	5.62662678953409	5.86941374971455	5.1052521696812	5.31546441982493	5.2139633587425	-0.998292252026138	0.00335617379768985	0.0457279366887469
Merged-chr10-81377123-2	chr10	81376623	81377623	+	952.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019757, intron 1 of 13)	intron (NM_019757, intron 1 of 13)	1247.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	4.05794100071258	3.47800284689337	3.88888524885798	4.07281615616245	3.87763249266478	3.95872205396509	0.425691280104881	0.449262969239978	0.807654167538514
Merged-chr12-3874942-2	chr12	3874442	3875442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	B1_Mus1|SINE|Alu	-12698.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.4567854289706	5.76958263000933	5.53825159866555	5.79733616249958	5.88673531320517	5.48099440244949	0.268468675917858	0.426920327711873	0.793904265858508
Merged-chr17-43326874-4	chr17	43326369	43327369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33562.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	5.40499097383634	5.54682609481331	5.52550452269559	5.76096808870571	5.94003368993038	5.26760307563555	0.391020265700541	0.275397453488596	0.672917218000561
Merged-chr13-3523655-4	chr13	3523140	3524140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-14435.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	3.69802833725721	3.55428971570876	3.8262197322032	3.8080026756824	3.68196450809645	3.84621403876087	0.282942608762093	0.600067026103843	0.881447020636499
Merged-chr12-100079921-3	chr12	100079413	100080413	+	848.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32418.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	3.26017179961133	3.33719556426574	3.29057212183034	3.31536209702523	3.19345393605286	3.46999160672716	0.107397508399629	0.860992826678345	0.967735933030551
Merged-chr2-103606017-4	chr2	103605515	103606515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	MIRb|SINE|MIR	39705.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.71857423856639	5.46056775762194	5.79391632769524	5.65183574298811	5.71769474249529	5.80633552575326	0.121396310202233	0.705998340427257	0.922860889329529
Merged-chr9-44514289-4	chr9	44513791	44514791	+	977.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	12130.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.93131820707371	5.75788432544252	5.99448012784575	5.79678498466325	5.79006438955455	5.68645697692211	-0.232008489992107	0.448777767861735	0.807454029128485
Merged-chr4-28424553-4	chr4	28424033	28425033	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-388598.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	2.77169371112594	2.96857937433789	3.00424020282419	2.54634761066093	2.41782907988597	2.78417185976042	-1.92008109315556	0.020385199906897	0.163461149109742
Merged-chr12-41315152-4	chr12	41314666	41315666	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170891.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.5096066587801	4.55258391992085	4.93557876279897	4.2263762932653	4.15918083654112	4.17878451252681	-1.24298561747571	0.00709809301423359	0.0789490874920931
Merged-chr15-76368929-4	chr15	76368447	76369447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	49.0	NM_021555	59053.0	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding	5.44422384545294	5.3497140320397	5.23325172184297	5.3001587013966	4.81663555012122	5.01997620856091	-0.599462105282341	0.112806680912881	0.448580074747098
Merged-chr9-75410992-3	chr9	75410549	75411549	+	802.509277	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 1 of 3)	PB1D10|SINE|Alu	865.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	6.68441409388111	6.45556298067433	6.43645435826824	7.26792447428564	7.36395722024657	6.88944307684536	1.02386418501049	0.000182408174141014	0.00464437556729666
Merged-chr17-85562686-3	chr17	85562186	85563186	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55710.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.97009386826535	2.96718103820763	2.97312109674615	2.87213558524789	2.50268929814939	2.8023340386355	-1.24147246218881	0.109055354208312	0.441184262590686
Merged-chr7-113716361-3	chr7	113715840	113716840	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49658.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	2.47952673851893	2.2035359945738	2.68352361527008	2.28314186209749	2.06461019546391	2.11469289098027	-2.22991825268666	0.0245342653461443	1
Merged-chr6-4054626-4	chr6	4054123	4055123	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7039.0	NR_131108	78034.0	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	Gm43986	RIKEN cDNA 4930528H21 gene	ncRNA	2.77077624283921	2.56836287109521	2.46745552814752	2.9948165424836	2.64078224642003	2.81122169189892	1.11718976955544	0.168037039367802	0.544323041683188
Merged-chr15-101981511-4	chr15	101981009	101982009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22833.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	6.79189580148561	7.1377093177354	6.9649973660899	6.94635306033013	6.69431630194722	6.92668031556309	-0.183631214358519	0.484688647150402	0.826994448591038
Merged-chr12-55384174-2	chr12	55383674	55384674	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310583)	promoter-TSS (NM_001310583)	-48.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	2.58119120809094	2.5438436073277	2.67631216716852	2.65563129158587	2.61020481217731	2.74932123876515	0.400121355864969	0.593732721003935	1
Merged-chr3-95136538-4	chr3	95136027	95137027	+	877.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	2439.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	5.75443819606696	6.05200482729971	6.16396965062944	6.18178341918072	6.73178175385872	6.02324052735748	0.617801314067673	0.070662217761789	0.348465703521777
Merged-chr16-94369892-2	chr16	94369392	94370392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009441)	promoter-TSS (NM_009441)	438.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	5.42089634687587	5.86608927016785	5.71406666762413	5.63424150620454	5.3055877461217	5.53268489162479	-0.354207541870287	0.309651339655546	0.705284189627819
Merged-chr8-115530208-4	chr8	115529701	115530701	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176693.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.81536815200604	3.95429050960926	3.71719525337338	3.62620855154886	3.59140806882278	4.07577602679223	-0.203301553032071	0.717594245898973	0.927113669510706
Merged-chr1-185224383-3	chr1	185223886	185224886	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	L1M4|LINE|L1	-18540.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	5.35009805160002	5.0328985586155	4.99925078806386	4.97795686185576	5.00490517015512	5.09958425401429	-0.250861437526946	0.50458299649624	0.837779945574363
Merged-chr13-97441357-4	chr13	97440802	97441802	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	6332.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	5.44436710930494	5.39773392309136	5.80443883289711	5.84719020762355	5.97266590653818	5.51528039789202	0.468365955924311	0.174967913982308	0.554639421945212
Merged-chr5-19656163-4	chr5	19655669	19656669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-251349.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.78382342543389	4.73686943630223	4.69337155199677	5.04013140961662	5.04229597506492	4.63293348072452	0.425868056520892	0.292299002175828	0.689525001362127
Merged-chr7-90130948-2	chr7	90130448	90131448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	735.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	8.65499693315482	8.82548510186316	8.61995283299271	8.7513421182097	8.87821255677959	8.55058245236889	0.0454959141110399	0.831392396531411	0.960444904168444
Merged-chr10-51483494-2	chr10	51482994	51483994	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 5 of 8)	intron (NM_008147, intron 5 of 8)	2882.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.06596575263125	5.22438834205315	5.17484999036315	4.38384442744584	4.6877302719119	4.70720894540862	-1.24178038480068	0.00210090681924017	0.0320638764885062
Merged-chr10-81360426-2	chr10	81359926	81360926	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 2 of 9)	intron (NM_028657, intron 2 of 9)	2935.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	2.77055002168292	2.579241100941	2.67547139726794	2.45344823353394	2.41529254088711	2.49458013705466	-1.3709826094952	0.0876062245042989	1
Merged-chr6-88041364-1	chr6	88040864	88041864	+	603.0	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	3653.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.97638154083282	3.87746841967367	3.76816178100554	3.89728977803955	3.68246871093183	3.9886983418052	-0.0859323618755888	0.870293033466419	0.970065609722504
Merged-chr1-91035712-3	chr1	91035264	91036264	+	644.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-17680.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.52459436914745	4.56129141628155	4.24030935711603	4.30729062040757	4.23712685572412	4.48744004778076	-0.307829511644462	0.497424265377409	0.833640755144374
Merged-chr17-70753290-2	chr17	70752790	70753790	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	RMER10B|LTR|ERVL	93487.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.6290127687299	3.45082805997104	3.54737230549895	3.14776788842484	3.28462029874332	3.16913721618124	-1.36871540369292	0.0295925520920039	0.207006059224167
Merged-chr10-41958847-4	chr10	41958334	41959334	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	59548.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	5.37330952451559	5.55482719375133	5.44456846268873	5.58462541283492	5.18902222512753	5.69738765184062	0.0659713496695065	0.85313676759643	0.965597129346461
Merged-chr17-50528693-4	chr17	50528196	50529196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTEa|LTR|ERVL-MaLR	19149.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.06336937572044	5.42187646285388	5.88292668670539	6.19081343038948	6.04827876653092	5.65211318312533	0.304922454590134	0.397480884979928	0.774412041711385
Merged-chr4-86676850-3	chr4	86676367	86677367	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6808.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	2.95496494983952	2.73939178336837	3.06545840134585	3.05941489398796	3.0588900499496	3.3027258028477	1.00509293498818	0.149970641797604	0.516609804764046
Merged-chr10-34113465-4	chr10	34112957	34113957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	14515.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	5.00559896194113	4.69805325612287	4.73065661895688	4.57618605001302	4.57895093758354	4.54993869196765	-0.596252559286976	0.148965433957186	0.515046780882137
Merged-chr17-35425803-2	chr17	35425301	35426301	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023124, exon 3 of 5)	exon (NM_023124, exon 3 of 5)	924.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	3.6270266981792	3.58606599178807	3.35728598971309	3.95004527170964	3.55049371333345	3.71764851389791	0.727611877855562	0.216073995636676	0.60954315937539
Merged-chr13-91093836-3	chr13	91093348	91094348	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130139.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	4.39688127338044	4.5452414380794	4.40151555584238	4.17838361897989	3.97511690330862	3.94136964562367	-1.14521720590047	0.015735277297366	0.137358471816957
Merged-chr11-61868237-4	chr11	61867722	61868722	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13130.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	5.7428875584039	5.7298511953713	5.6186802421687	5.73212272775639	5.79240985411637	5.2707484287099	-0.123493278567442	0.717956090321221	0.927249469209724
Merged-chr8-77436832-2	chr8	77436332	77437332	+	938.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-80224.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.75352637410072	3.86210550501797	3.808590761076	3.7322505335437	3.69106168340477	3.82764503742569	-0.205102363589599	0.695547857512476	0.919289041383579
Merged-chr16-90936044-2	chr16	90935544	90936544	+	555.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164483)	TTS (NM_001164483)	-1195.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	3.65241862940316	3.50940634301041	3.74819472281654	3.42330514252001	3.63195617874789	3.81673492749499	-0.0223351860094579	0.968810134105121	0.992866574393222
Merged-chr15-38077286-2	chr15	38076786	38077786	+	824.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	1568.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	4.98361135835022	4.91322742260517	5.0820428094869	5.19944277611767	5.17410814128795	4.89305726035592	0.24785872152211	0.507910618243776	0.839519014775792
Merged-chr6-116458981-4	chr6	116458475	116459475	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	2203.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.13322885815229	3.8762190962842	4.06810118342234	3.921279143287	3.72032981121679	4.30838407524273	-0.0993968050030221	0.85312512938144	0.965597129346461
Merged-chr4-133311967-1	chr4	133311467	133312467	+	592.0	f1_c57bl6.idr	intron (NM_199306, intron 5 of 15)	intron (NM_199306, intron 5 of 15)	27348.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	1.87346192616538	1.80660446208742	1.9981261968368	1.73251551705421	1.6057738491103	1.73381180466254	-2.07414869916383	0.0620063598277203	1
Merged-chr18-31633310-2	chr18	31632810	31633810	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1058.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	3.73845669911368	3.67742010925001	3.40798221437818	3.15108481828022	2.99138656076415	3.36594199361933	-1.86081982876774	0.00494168614859786	0.0607726605161884
Merged-chr7-114194483-4	chr7	114193974	114194974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	60206.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	6.14150255234577	6.14136725174545	5.93316963438332	6.51966185109925	6.6718630302924	6.11708406921217	0.642042197340676	0.035330919954501	0.230809074944973
Merged-chr10-67549252-7	chr10	67548762	67549762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005419)	promoter-TSS (NM_001005419)	-307.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	8.69311239874627	8.71776320819203	8.4775813458524	8.72857925609259	8.59587594665454	8.15377005707908	-0.15881600432179	0.512255186803372	0.841860053306022
Merged-chr1-183963186-1	chr1	183962686	183963686	+	565.0	f1_balb.idr	Intergenic	Intergenic	70812.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	2.38216587854791	2.24565687778212	2.29937909529075	2.37047118606605	2.29926060051192	2.50272002940561	0.511898240609391	0.539231991252254	1
Merged-chr13-12264915-4	chr13	12264411	12265411	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6798.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	2.49749968238296	2.24184193883008	2.67442713509458	2.48819904014114	2.40959436122035	2.62731331245356	0.171145219754878	0.8391443644491	1
Merged-chr15-76802105-4	chr15	76801611	76802611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	16059.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.93381980185289	5.91667658556345	6.04944051529384	5.67352925180318	5.80211569248236	5.75667216982499	-0.385433229030335	0.200306202395403	0.589275862286689
Merged-chr11-78126958-2	chr11	78126458	78127458	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	Lx8|LINE|L1	32285.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	3.83426345715154	3.79001585576326	3.97755227138228	3.84389772871098	3.91211628142974	4.30520512316099	0.491156064383043	0.349184652734124	0.737209301320654
Merged-chr2-91930404-5	chr2	91929958	91930958	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007699)	TTS (NM_007699)	1244.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	2.96282518366615	2.94779233028783	3.18112124996026	3.02198454310648	3.08530319668565	3.02348729296319	0.0788256077490356	0.905948280446114	0.978576016264467
Merged-chr2-120970691-4	chr2	120970177	120971177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009461)	promoter-TSS (NM_009461)	38.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	6.1852712360256	6.26604863888642	6.05823601536247	5.93975211125551	5.86413360357028	5.74697861946372	-0.555774875011645	0.0590708987902646	0.314644824497861
Merged-chr2-79214088-3	chr2	79213584	79214584	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41342.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	3.50606708056817	3.57919587979042	3.40757913236495	3.42653659390513	3.47480426883694	3.36366199616836	-0.289305450627054	0.620534783427565	0.890213289123814
Merged-chr19-5423621-2	chr19	5423123	5424123	+	775.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015545)	TTS (NR_015545)	1356.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	3.75700099830784	3.53953599248876	3.54179475990513	3.72028801442645	3.92874441360722	3.77667231429707	0.650332589062897	0.237478265236486	0.63392549144389
Merged-chr7-99182844-4	chr7	99182352	99183352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026384)	promoter-TSS (NM_026384)	-139.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	7.92187532209764	7.6880898582005	7.26992878502908	7.18305068110405	7.13285401644399	6.88992483509678	-0.859627418067063	0.00176886962426445	0.028104659861714
Merged-chr8-11469180-2	chr8	11468680	11469680	+	895.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	Lx10|LINE|L1	-8749.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	3.574052489146	3.62318411331617	3.79609634127779	4.0430336421637	3.71886628464225	3.81530115360138	0.665973481701615	0.22019463121213	0.614541989464645
Merged-chr2-18897213-2	chr2	18896713	18897713	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	B4A|SINE|B4	-95395.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	5.71847369322527	5.78597577716841	5.58425866603249	5.50202384589714	5.46125637352541	6.0941541757951	0.00369221619953882	0.991753709152618	0.998351393644539
Merged-chr5-35102728-2	chr5	35102228	35103228	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2969.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	2.82808835205154	2.66191051537102	2.79571938823658	2.61936220358359	2.58396142531296	2.74702811668854	-0.629361810836165	0.399056708817488	1
Merged-chr10-19614546-4	chr10	19614040	19615040	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7488.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	4.41110444771397	3.92859497672729	4.35567651250918	4.22788939660569	3.79476166187438	4.29585128915161	-0.357665178468774	0.500254289672774	0.834978949366358
Merged-chr1-165724922-1	chr1	165724422	165725422	+	788.333313	f0_balb.idr	Intergenic	Intergenic	-16828.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.82246410046964	5.18283690441045	4.94807302062882	4.89729907191324	4.81619990393829	4.90352362752964	-0.281003841309233	0.470621206393401	0.819543956753216
Merged-chr7-144936125-1	chr7	144935625	144936625	+	581.0	f1_c57bl6.idr	intron (NM_007631, intron 3 of 4)	intron (NM_007631, intron 3 of 4)	3800.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.26047934865092	2.19542254512638	2.45901351403214	2.49051315046991	2.35219555683254	2.53322823265975	0.999535677255	0.237214759860448	1
Merged-chr5-64232016-3	chr5	64231503	64232503	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	1646.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.14798744046227	6.57773297313091	6.54063875402966	6.89994320369892	6.99911331977332	6.66807159087334	0.689657708849212	0.0155751939646834	0.136270671442702
Merged-chr4-63583456-2	chr4	63582956	63583956	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 9 of 9)	intron (NM_144905, intron 9 of 9)	17308.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	3.06569982776055	3.20577324164345	3.66787369683214	3.47857159737277	3.08487439864596	3.15107454702845	-0.328467150886881	0.635168545097945	0.896439353901449
Merged-chr14-9391373-2	chr14	9390873	9391873	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-492722.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.25055441171053	3.22346075818724	3.33933045764456	3.30747330900614	3.01734480779149	3.66413230997745	0.312584506389086	0.638934269638036	0.897847437626511
Merged-chr9-44305772-4	chr9	44305246	44306246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172162)	promoter-TSS (NM_172162)	-75.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	6.95422379147919	7.29987335441167	7.06907388398586	7.0726343883889	7.1865069373135	6.5256508721375	-0.220961498678355	0.45175801060529	0.809245753174589
Merged-chr11-58948814-4	chr11	58948300	58949300	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030082)	promoter-TSS (NM_030082)	-111.0	NM_030082	78303.0	Mm.28022	NM_030082	ENSMUSG00000056895	Hist3h2ba	1500011O09Rik|AI413321	histone cluster 3, H2ba	protein-coding	3.44664763379856	3.35812246623099	3.10568060625866	3.4071709282563	3.65342747987379	3.98034695235348	1.37352294933954	0.0380055288317361	0.241254504350862
Merged-chr10-89547988-1	chr10	89547488	89548488	+	569.0	f0_balb.idr	Intergenic	Intergenic	-14366.0	NM_001163504	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	4.782130606178	4.86344716239231	4.37939522755448	3.600456202443	3.7190333392611	3.83910434106669	-2.93061241174467	9.18899483384616e-08	6.61989508341707e-06
Merged-chr2-30967705-7	chr2	30967200	30968200	+	962.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144884, exon 1 of 5)	exon (NM_144884, exon 1 of 5)	218.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	8.12611442699042	8.50793200719032	8.27537541710302	8.41045688396468	8.5651975806484	8.42610235428066	0.217319464302762	0.3283519808359	0.720562985671201
Merged-chr5-62845010-4	chr5	62844494	62845494	+	868.195801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	31171.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	6.20953870587669	6.23539996757079	6.18494494703201	5.94087019453932	6.2787139982734	6.34366976978773	-0.0224045328147626	0.938904609787157	0.986550175078409
Merged-chr13-74260197-7	chr13	74259687	74260687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	CpG	32144.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	8.47964397927712	8.74511416650336	8.46893270791001	8.51789519484535	8.65384995872121	8.54593551759142	0.00163165538022966	0.99385161987941	0.998819658057245
Merged-chr9-107340524-4	chr9	107340004	107341004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175486)	promoter-TSS (NM_175486)	-136.0	NM_175486	235599.0	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	4.9828036368366	4.60335914442882	4.53109641128387	4.39376533505081	4.14481661929065	3.95323993527128	-1.38827584256828	0.00461032236214263	0.057895518126949
Merged-chr5-123142282-4	chr5	123141779	123142779	+	835.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	86.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.81211349688177	5.56822526037507	6.30457782570073	6.15367752971969	6.20529163763037	6.64163262663075	0.721945824400841	0.0407805739298144	0.251913139981588
Merged-chr1-71811465-4	chr1	71810992	71811992	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76620.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	2.50336249283893	2.43190823364815	2.69912860585606	2.51942466070454	2.48621224684295	2.88743264171394	0.519682788999028	0.51831818358259	0.845156513047069
Merged-chr10-8925450-4	chr10	8924946	8925946	+	845.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39376.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.61843740112826	3.24659828875597	3.21955557011768	3.80262873615177	3.57348160192348	3.80010141213474	1.23016083013896	0.0497219163959073	0.283637904653031
Merged-chr8-11025095-2	chr8	11024595	11025595	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-16665.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	2.75834098082649	2.41170822544663	2.63216866658375	2.3565939524218	2.40168333434981	2.51724195312541	-1.11922635306773	0.177367851488651	1
Merged-chr8-91051807-4	chr8	91051328	91052328	+	664.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18229.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	4.78184228034731	4.75040924075174	5.11393265208146	4.67680694124333	4.44473613033057	5.1464987215331	-0.243894637397036	0.58712231045589	0.875769926947203
Merged-chr8-80951930-2	chr8	80951461	80952461	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62945.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	5.9918563554278	5.76810332669316	6.00815215924915	5.91320734563114	5.81516308021091	6.19368182984839	0.0871227950677392	0.780091880251408	0.945949149660645
Merged-chr2-163939815-3	chr2	163939321	163940321	+	985.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21138.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	3.6702930327257	3.68943851550295	3.48402521648171	3.01327859056535	2.88841396265463	3.33251815103059	-2.38122568732892	0.000783294382756696	0.0149418521321456
Merged-chr8-26698746-4	chr8	26698281	26699281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125642.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.91001260628631	6.98975480342376	6.86426347469187	7.26521276822583	7.43028696680023	7.11723604129833	0.542884134608687	0.0267894774421398	0.194851297115872
Merged-chr11-59578357-3	chr11	59577897	59578897	+	894.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6659.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	4.03204791442806	3.84135984070087	4.07815116665187	3.82143351880879	4.03140883463151	4.31384917497325	0.239831061944368	0.643187637883577	0.899675830462702
Merged-chr11-118143860-2	chr11	118143360	118144360	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-14641.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.13286976907619	2.84468161518503	2.73413987184687	3.09517907019713	3.09811774511343	3.24154440761144	1.01322680716879	0.166316301610075	0.541553057226702
Merged-chr9-38718293-4	chr9	38717790	38718790	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172767)	promoter-TSS (NM_172767)	22.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	5.82193238302529	6.35489562092837	6.12165017675123	6.10863206564782	6.36482003173953	5.84713672396028	0.0270537594928833	0.935370671847833	0.985852245513165
Merged-chr10-80757923-3	chr10	80757399	80758399	+	860.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	2696.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	2.77918658142293	2.54793963755319	2.83282458801391	2.86027021670264	2.62008408446989	2.45099416118025	-0.362073376892227	0.657530020084734	1
Merged-chr1-82839460-4	chr1	82838957	82839957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010472)	promoter-TSS (NM_010472)	-3.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	6.8437515016094	6.31968700315461	6.45357678094466	6.86265989678018	5.85559127548009	6.21390755937566	-0.282997013629683	0.449556929487063	0.807851006149782
Merged-chr4-53085050-2	chr4	53084550	53085550	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 13 of 49)	intron (NM_013454, intron 13 of 49)	73170.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.90059645544638	2.79173949665098	3.09983240910962	3.36537774362493	2.99059629463984	2.86308058865428	0.72662853947956	0.316730520929512	0.710746480370483
Merged-chr4-155992511-4	chr4	155992000	155993000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011341)	promoter-TSS (NM_011341)	178.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	7.18587351042019	6.95991494832555	7.14139832139851	7.14388883317783	7.00735380774296	6.85948898425886	-0.127577912755513	0.609347842905583	0.88516178840073
Merged-chr12-102371711-2	chr12	102371211	102372211	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	68102.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.65117183014256	4.72858492151823	4.83852056442176	4.91130612849772	4.76128298268068	4.58642515523231	0.0676868537224122	0.867403379157046	0.969329865332858
Merged-chr5-125348628-4	chr5	125348133	125349133	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7539.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.04720544254385	5.93420127844935	5.86326794341059	5.54314480482006	5.51140764985257	5.52131140490416	-0.78296777992846	0.0112963736418086	0.109627788428693
Merged-chr1-133133671-4	chr1	133133172	133134172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	2506.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	7.32652148099501	7.39642969889034	7.02509041817414	6.9303070337131	7.39797205006659	7.24812768745531	-0.0827538707146268	0.757811774062684	0.939957028913442
Merged-chr2-148573348-4	chr2	148572848	148573848	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99267.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.52814084647486	4.83507484184392	4.52121137847785	5.00528819114929	4.91714877298898	5.18200559371936	0.866523302367304	0.0348660330036267	0.229030778729436
Merged-chr7-84196445-3	chr7	84195940	84196940	+	944.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44547.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.33152957726914	2.88316875255098	3.01257171343494	3.82484327208277	3.22105844213653	3.45816396723287	1.70903453404865	0.0192205902598422	0.157336989968618
Merged-chr2-128796669-4	chr2	128796152	128797152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-21651.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	6.14634253902368	5.96749663853521	5.50724018799516	5.69982757297664	5.92264714577639	5.77410414909968	-0.191469929418681	0.573676997218027	0.870273757238243
Merged-chr10-77613682-4	chr10	77613175	77614175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125903)	promoter-TSS (NR_125903)	-34.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	6.19616121507042	6.31369840958016	6.64876283464907	6.03378572389992	6.41956212125942	6.48122662249315	-0.1083261534214	0.725524247401373	0.929698613727862
Merged-chr19-40698642-2	chr19	40698142	40699142	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	38872.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.85103219262579	3.98144868628653	3.93498502804432	4.4261118593837	4.19440478446851	4.20136066870052	1.01979838475019	0.0358983895632908	0.232853732116132
Merged-chr2-164444600-4	chr2	164444076	164445076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	3.86991392541757	3.73003364413477	3.68497458328179	3.27297138809757	3.58016469894035	3.54030041027976	-1.02503843390441	0.0809931061733564	0.37660097113566
Merged-chr15-101265183-2	chr15	101264683	101265683	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1663.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	4.4260535671101	4.31895231860722	4.06011948993767	4.40165151923812	4.44826665257238	4.46043566406761	0.386666228425826	0.398658634463604	0.775326936622279
Merged-chr15-27667949-2	chr15	27667449	27668449	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	13593.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.93676379867068	5.02283532495548	5.06253796169276	4.75251641294775	5.08782375503459	4.83848376669161	-0.203607676689179	0.600170408335083	0.881490627508743
Merged-chr11-48872907-2	chr11	48872407	48873407	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1487.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	6.73271264914991	6.93719356236346	6.54964498697338	6.87971123737951	7.00360655312897	6.66212107001213	0.164751362988804	0.54538646533784	0.858086957578862
Merged-chr10-80750711-2	chr10	80750211	80751211	+	636.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4492.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	3.99860585145868	3.63898806951658	3.5375973004373	3.90165661937101	3.87587983081383	3.72292616085515	0.290048306954141	0.60794036580604	0.884825991918647
Merged-chr4-133672591-4	chr4	133672099	133673099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	48.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.91513655448698	7.83161873768646	8.12183594411188	7.74987180394183	7.99658315912572	7.89918681626694	-0.0989767024920757	0.662658059507548	0.906804932599005
Merged-chr18-56799844-1	chr18	56799344	56800344	+	661.0	f0_balb.idr	intron (NM_177115, intron 3 of 4)	L1MC1|LINE|L1	92031.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	2.66824932024944	2.82370431446648	2.79084711635766	2.66372251725419	2.58248874598801	2.67908974071579	-0.677729384301465	0.362860685071976	1
Merged-chr13-9457202-4	chr13	9456701	9457701	+	938.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	ORR1F|LTR|ERVL-MaLR	180676.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.97360153851442	5.28644099774747	5.46927911169721	5.51969831550521	5.53883406320369	5.04401419121748	0.289848259133144	0.454049757230156	0.810100289331925
Merged-chr11-97557144-4	chr11	97556647	97557647	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	17979.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.70292131466173	3.13941323679234	3.67093361583891	3.63708217469178	3.56546471008422	3.83850795983346	0.526867222475158	0.405856175931512	0.780439975167702
Merged-chr11-99187001-4	chr11	99186496	99187496	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31919.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.56545979668879	4.16884860930417	4.4860411045591	4.85274998743168	4.7689523832518	4.11508545435716	0.510440716340565	0.309899722412679	0.705462734304293
Merged-chr2-167815316-4	chr2	167814758	167815758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117069.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.80760543520887	7.63791832524902	7.58197281656533	7.55626117020224	7.82878874327942	7.67610741778275	0.0186781203951507	0.935423650549887	0.985852245513165
Merged-chr11-107473311-4	chr11	107472813	107473813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.72663289401956	4.54581331389465	4.39230329231026	4.69899395412727	4.78119242123931	4.5950679619012	0.307233642732217	0.467568353668377	0.818056375344009
Merged-chr16-55687708-4	chr16	55687205	55688205	+	909.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134433.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.42667132076888	3.41441595523931	3.40492355046576	3.55270591088139	3.4023181101429	3.11172650218526	-0.158484446835251	0.80124598876684	0.952878874802568
Merged-chr1-91282750-3	chr1	91282248	91283248	+	875.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 9 of 10)	intron (NM_001355764, intron 9 of 10)	-15590.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	4.18838991034092	4.06478781918942	4.01626668995978	3.9877920388344	3.69765886378776	4.03710364969652	-0.565948152458344	0.268216839031877	0.665319558653313
Merged-chr9-118616799-2	chr9	118616299	118617299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	10090.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.97835138052652	8.10483138961011	7.7930283906304	7.86865447539966	7.95543309512845	7.64943666351974	-0.189709583164167	0.413077647907078	0.784770288990094
Merged-chr6-28319297-4	chr6	28318793	28319793	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57692.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	3.80154006603789	3.89220242381637	4.04741229221086	3.97917586507433	3.64917943005822	4.88480626270315	0.998076343816606	0.109256185520784	0.441676246779623
Merged-chr3-137981592-4	chr3	137981109	137982109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310753)	promoter-TSS (NM_001310753)	-60.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.8908030136296	7.31814603965288	6.85629454296707	7.21006487906314	7.36985235926857	6.80447063570655	0.170015011082082	0.560317696111435	0.865206445804495
Merged-chr13-23685791-6	chr13	23685481	23686481	+	810.105591	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	1782.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	6.02940926438472	6.14245118800063	6.01465188553237	6.28281917068267	6.35864753097827	6.45919196782555	0.499794956721997	0.0734337811705988	0.356076810235617
Merged-chr4-128706732-4	chr4	128706215	128707215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	17977.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.71871266289303	5.30889103029905	5.73376764176972	5.29540690482927	5.39847556913674	5.67029221519787	-0.265545088607568	0.456194708906773	0.811437566026396
Merged-chr5-118404620-4	chr5	118404113	118405113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-156106.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.11112137101551	6.10661500387959	5.89890992405624	5.88142407265214	5.85599588581892	5.60885296844681	-0.443154282644988	0.1485642651827	0.51423667279513
Merged-chr7-138844908-2	chr7	138844408	138845408	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	1359.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	2.93285819378712	2.97096425348701	3.11693154823038	2.95850266554246	2.8033170511152	2.95706495793443	-0.483345912309284	0.481849671305278	0.825208669475694
Merged-chr9-50818293-4	chr9	50817814	50818814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 12 of 13)	intron (NR_045601, intron 12 of 13)	-38610.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	4.0116157286727	3.93493568449352	4.18720144287806	3.91124151365319	3.90275534841557	3.97985380128735	-0.338509964490139	0.49628176718033	0.83297253219447
Merged-chr11-70220546-2	chr11	70220046	70221046	+	686.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172371, exon 1 of 4)	exon (NM_172371, exon 1 of 4)	448.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	5.06156597869601	5.25921414684479	5.41067974208966	5.17853074877583	5.17724033061186	5.09709148137695	-0.181685709685838	0.614666197133997	0.887554399107584
Merged-chr4-66822698-4	chr4	66822212	66823212	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.60495736092215	4.80565304164762	4.64858155086904	4.27355596063412	4.33097716689886	4.33200857924168	-0.953695633879946	0.0270430101627966	0.195822364426593
Merged-chr5-123572252-2	chr5	123571752	123572752	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359513, intron 1 of 11)	B1_Mus1|SINE|Alu	763.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	6.15141861465937	6.70627436130343	6.12101918648394	6.48250040455958	6.92505858184584	6.35627659786657	0.411405784397607	0.22016764910617	0.614507907782981
Merged-chr4-86672017-4	chr4	86671537	86672537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1978.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.73954609315871	7.76295165128426	7.3476963281164	7.34482771869105	7.3229385989792	7.13537919445288	-0.532399110812619	0.032374963283506	0.218723872000602
Merged-chr14-70174853-2	chr14	70174353	70175353	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 2 of 9)	intron (NM_145978, intron 2 of 9)	1962.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	4.76551525111106	4.6519090438416	4.7332930599357	4.8376747134568	4.8875472812243	5.0502929753758	0.466002069509514	0.232426433809958	0.628761339174128
Merged-chr9-106308763-4	chr9	106308246	106309246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27685.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	6.74035882079226	6.70649863661284	7.11758807145099	6.63046588446938	6.85226487703024	7.07941069342536	0.0038212181572109	0.9891870036011	0.997534219501968
Merged-chr14-66225785-3	chr14	66225325	66226325	+	847.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-12001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.29837066151849	6.28070396904027	6.2078756292806	6.06010626181689	6.40107547597763	6.54567201501801	0.135757243914654	0.642670406565037	0.899466331938237
Merged-chr2-160360645-4	chr2	160360139	160361139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6426.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.79446837856536	5.6910246390288	5.81897206860394	5.50173405994606	5.59627617007259	5.47556801856847	-0.435351437521586	0.168493423998591	0.545143511317938
Merged-chr1-131062178-1	chr1	131061678	131062678	+	598.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	35665.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.573261652	3.63630420662891	4.10744717662816	3.46470928660602	3.20654178211009	3.82632732338355	-0.920872009441025	0.151899799827522	0.519634796559235
Merged-chr19-32775017-1	chr19	32774517	32775517	+	563.0	f0_balb.idr	intron (NM_008960, intron 1 of 8)	B3A|SINE|B2	17440.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.01859800837683	4.5219792098328	4.2751967207384	4.47264244477564	4.29406067784249	4.6715542685927	0.482688395377787	0.318970746305106	0.71299004032015
Merged-chr18-11352533-4	chr18	11352016	11353016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280760.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	7.03955894003311	7.55896892964542	6.90748116831661	5.60413501670423	5.46805259005084	5.56875954456853	-2.76737538374027	4.88168846351366e-18	2.40352386788192e-15
Merged-chr2-6690349-2	chr2	6689849	6690849	+	683.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	31313.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.49210448371954	4.47352018060209	4.33618158492953	4.47079583944049	4.56679048046813	4.44917637599	0.150488657655633	0.726339313100845	0.929802379677973
Merged-chr6-124682430-4	chr6	124681942	124682942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	19338.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	4.44761047870143	4.2831787229287	4.53814367474926	4.33600381283029	4.4692328718206	4.25947463121659	-0.143641508719158	0.74874452854209	0.937087780077821
Merged-chr7-127080271-4	chr7	127079788	127080788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11148.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	4.36346508044705	4.28087063936627	4.33568020517751	5.02990239038368	4.7698464578238	4.93088630407964	1.410061636626	0.000815837780968057	0.0153780379100932
Merged-chr15-34083809-2	chr15	34083310	34084310	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	intron (NM_001357925, intron 1 of 10)	1091.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	6.55844144243332	6.80232206920884	6.67830827673573	6.72945797415816	6.85314817141419	6.76864007659367	0.160620421382496	0.531326476023072	0.851563330256521
Merged-chr1-173809482-4	chr1	173808988	173809988	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-42569.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	3.91080382573746	3.55508420487285	3.73742034980474	3.36549417256542	3.30644759986792	3.43255872690623	-1.3937726283804	0.0188602639300782	0.155432161016447
Merged-chr1-131942991-4	chr1	131942460	131943460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19955.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	6.33269706224072	6.51080004452397	6.25130560926769	6.14971493351143	6.35288649245131	6.22856832744145	-0.206234134171443	0.463507265183859	0.815967344844467
Merged-chr7-140940361-2	chr7	140939861	140940861	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1030.0	NR_153832	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	3.16299259573177	3.10402633823687	2.87817993280499	2.92679012200099	2.91254694941382	3.1910258855573	-0.218566907621587	0.753454180292498	0.938549578325581
Merged-chr8-105714361-4	chr8	105713870	105714870	+	889.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6081.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	2.65335200720668	2.79480388418585	2.92942316000621	2.68430314462767	2.53952190171256	2.76602805305076	-0.711716342529354	0.346409504160521	0.734677492075457
Merged-chr5-64970085-4	chr5	64969587	64970587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026667)	promoter-TSS (NM_026667)	12.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	7.124016021104	6.84334391052006	6.52216606873837	7.32363457017438	7.14815628524102	6.81000419203753	0.386160509549799	0.192471895258953	0.579567960797124
Merged-chr15-12206218-3	chr15	12205727	12206727	+	594.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	B1_Mur2|SINE|Alu	1199.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	4.36951344450702	4.28031981769076	3.89693837078671	4.43755618345876	4.12276069485827	4.07734641896212	0.0464598361405654	0.92732361642573	0.983584626679457
Merged-chr9-50528681-4	chr9	50528170	50529170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	-29.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	7.06559977832577	7.18110688590265	6.79801671499314	7.29357321042372	7.17753860658196	6.74173719891645	0.104152230890025	0.710025202579109	0.924175654358917
Merged-chr11-29808740-4	chr11	29808253	29809253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	16915.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	7.73243315278742	7.79307553534388	7.28627071720306	7.96910251501894	8.21670650919726	7.43873013152469	0.420977965137674	0.153330931809045	0.522198762850649
Merged-chr4-145239444-4	chr4	145238923	145239923	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	7447.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.55929753898015	6.81384320039512	7.05384221503965	6.81646046543146	7.04536266368727	6.76410887017407	0.11091702050034	0.688823577639974	0.917235946766438
Merged-chr19-25044110-2	chr19	25043605	25044605	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	44576.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.34409515566334	4.50262128343641	4.66164756487762	4.41933740154906	4.70971265888902	4.83596440138816	0.391121256458478	0.371346629479208	0.755539117055204
Merged-chr5-115491274-2	chr5	115490789	115491789	+	775.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-6805.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	5.02699856438081	4.99120059886631	4.82963815252394	4.788048668245	4.84910121250715	5.0044837977212	-0.178711665011855	0.640972505324323	0.898687924380943
Merged-chr8-33660063-1	chr8	33659563	33660563	+	799.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	6825.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.0750179796191	5.27885553849208	5.35011556477547	6.22940755002498	6.67613708622462	6.73882555497706	2.36355864668346	1.09192295227928e-12	2.07910125888454e-10
Merged-chr10-67311609-4	chr10	67311096	67312096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26315.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.45663215703529	4.18148493217758	4.14454826704556	4.4461244277791	4.27042480600199	4.00828213305877	-0.0354551528879986	0.942165102964814	0.987102416110504
Merged-chr14-60252615-2	chr14	60252115	60253115	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	6.61393094688044	7.06315625735816	6.80662249558972	6.59480485341501	6.87991575623061	6.75838498701511	-0.142392784540078	0.607446314174191	0.884581207370863
Merged-chr2-90496497-3	chr2	90495988	90496988	+	906.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17314.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.87255844166907	4.6529923311944	4.7757741723003	5.11975236125556	4.97038651027231	4.95525902997178	0.549280558413748	0.154547588461628	0.523877774629424
Merged-chr17-34301409-2	chr17	34300929	34301929	+	883.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4438.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.47570794180555	3.91094177298622	3.46227920540989	3.35383964795628	3.56411801313247	3.41845993055055	-0.669343717426952	0.276340495008019	0.673710515928135
Merged-chr16-11009132-2	chr16	11008632	11009632	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	intron (NR_040518, intron 1 of 2)	234.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.10682408160935	7.02080738797619	6.97773067823639	6.49846724687016	6.87685690407017	6.55257267578804	-0.576294171148055	0.0305991383072427	0.211558942778361
Merged-chr4-99122640-3	chr4	99122106	99123106	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1691.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	3.13419051913866	3.05271820216792	3.48063873443708	3.2464222273464	3.13648616727623	3.59907817179745	0.425277209430878	0.524493774285756	0.848720911121316
Merged-chr19-45560665-4	chr19	45560183	45561183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020032)	promoter-TSS (NM_020032)	98.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	6.53633007770104	6.30154495697652	6.21507941856469	6.44328192929659	6.64623064968381	6.33804618471085	0.205716262967202	0.47025944210051	0.819394137837651
Merged-chr6-146222808-3	chr6	146222298	146223298	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	279425.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.88344525948399	4.79589712620807	4.93228595285465	4.47740989247501	4.62954230892221	4.66228653683349	-0.645446638628431	0.108985497042065	0.44106937375527
Merged-chr16-57570729-4	chr16	57570233	57571233	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	21491.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.86910865262419	6.73922649522607	6.4442284156577	6.65187616182928	6.99445201980023	6.90057746067535	0.23890326501944	0.38940740147388	0.769109427279039
Merged-chr4-35166031-4	chr4	35165540	35166540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8556.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	6.01086034480989	6.3218884730148	6.32295845552527	5.90589098894233	5.81343339397775	6.32728709114208	-0.344351585651871	0.281810508189238	0.679908771156903
Merged-chr4-155068165-4	chr4	155067670	155068670	+	985.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042407, intron 2 of 5)	intron (NM_001042407, intron 2 of 5)	1140.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	5.4878910800546	5.56164695197765	5.5917912123985	6.10582153203005	6.0712418520239	5.76531376831002	0.818044185275005	0.00911800753759983	0.094423294485203
Merged-chr7-44939611-2	chr7	44939123	44940123	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-3617.0	NM_001077591	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	3.16026646042363	3.36380098961907	3.21575162054532	3.11702562671253	3.04852078795653	3.39706687900538	-0.263458571406112	0.684940868123522	0.916057018456004
Merged-chr6-33501243-3	chr6	33500760	33501760	+	823.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	252132.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	2.3302968633937	2.22622046790366	2.53355189364677	2.30405639443182	2.22182321977291	2.35723254046118	-0.474287394711012	0.577284404325372	1
Merged-chr10-42762690-2	chr10	42762190	42763190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	1194.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	6.33165738087969	6.32242660258999	6.40184936802097	6.08890914172529	6.16445084706016	6.25142538579315	-0.305532567890597	0.265620037008702	0.663375523311218
Merged-chr2-126500724-4	chr2	126500217	126501217	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-870.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.67705946826166	3.75281964249739	3.54025675106773	3.49998199180794	3.39139158654532	3.50012011591335	-0.736167013842747	0.196424226112512	0.58423678218776
Merged-chr9-61701727-2	chr9	61701250	61702250	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	212760.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	5.42522739794438	5.37139021512082	5.17279801703177	5.58993435889202	5.34819091536366	5.40049470807895	0.221519153614899	0.521043906180021	0.846922225237145
Merged-chr14-54463269-4	chr14	54462758	54463758	+	923.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-889.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	5.29917112194741	5.84147176134027	5.58570467674872	5.60912329664602	5.83925448738017	5.6483639607565	0.201824607243878	0.563010894506358	0.865757618785184
Merged-chr13-20171240-1	chr13	20170740	20171740	+	802.25	f0_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	80733.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.1078665413618	4.31779483778129	4.41556538123651	3.97397499388225	3.75400346829003	4.2766574404591	-0.786037453567333	0.126332770047929	0.475264360708388
Merged-chr15-67903165-4	chr15	67902673	67903673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	355683.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.31078423876299	5.26313166188806	5.28140934481001	5.17770226329992	5.19501696514474	5.46293720566538	-0.0207121134469682	0.952738990066833	0.989274422979734
Merged-chr2-13785457-4	chr2	13784959	13785959	+	910.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	8061.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	3.88295092269534	4.03396080914171	3.59352498784092	3.86110118088504	3.67938404518109	4.12217560150043	0.109981619559171	0.845087230135548	0.963760118842549
Merged-chr2-167505422-4	chr2	167504924	167505924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1981.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	7.20498978809635	7.04625588616413	7.18037707446602	7.29466913983195	7.62784007309414	7.00043437178724	0.300852716902491	0.266906061383959	0.664374762344038
Merged-chr18-31911229-4	chr18	31910675	31911675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	728.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	7.66776148643945	7.89250784126418	7.84014737230024	7.90989181319494	7.58805120724155	7.95813778808362	0.0289925357892948	0.902598003614272	0.977564849398471
Merged-chr1-59762830-3	chr1	59762308	59763308	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1471.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	6.02489735047858	6.06684032677771	6.02671871143209	5.7402608849779	5.6898519668238	5.54632212212189	-0.663927958139115	0.02807132066197	0.200322337018971
Merged-chr1-170545561-4	chr1	170545057	170546057	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	L1MC4|LINE|L1	11553.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	2.90356684642476	2.98267229113121	3.1196326382844	2.68094998362328	2.69012552483091	2.6614370828494	-1.75603599123191	0.0203840736681289	0.163461149109742
Merged-chr7-83616439-4	chr7	83615933	83616933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 18 of 22)	intron (NM_177695, intron 18 of 22)	-15584.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	6.03774616974866	6.14656245598799	6.19884954513418	6.22067841730712	6.26119632267811	6.23860091306749	0.19485031315657	0.483492216600363	0.826239353451007
Merged-chr1-143917314-2	chr1	143916814	143917814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86835.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	7.10989341404419	7.36160044998727	7.43756729196653	7.39332706544704	7.69351701509171	7.56364939605046	0.371616490576438	0.129337281445583	0.481086120452575
Merged-chr13-113487232-4	chr13	113486727	113487727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	15617.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.88474354883383	7.5398260996421	7.42266627631562	7.7087022226107	7.97233098264039	7.25543365274268	0.0770568905165964	0.788448476995397	0.948954880993192
Merged-chr2-167685748-2	chr2	167685248	167686248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3167.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	3.07179508678019	3.13627851802374	3.42024745365745	3.14506240379839	2.96505602860909	3.10794047164536	-0.606496238972994	0.361333807764578	0.747256455237357
Merged-chr5-72793812-3	chr5	72793327	72794327	+	937.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-41050.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	4.36381634126597	4.27062132098235	4.38243506146361	3.93980956678627	3.5315964281402	4.05175486853464	-1.45859249621215	0.00623285719878516	0.0717222489000851
Merged-chr1-191878961-1	chr1	191878461	191879461	+	805.0	f1_balb.idr	Intergenic	MIR|SINE|MIR	-27820.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	5.82678523242753	6.02383305753308	5.99773126538035	6.23147724203496	6.15586209390192	5.60835481931764	0.154635693148537	0.639665860781801	0.898199312621371
Merged-chr15-25605588-4	chr15	25605131	25606131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16919.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.21540820825165	4.95274105481857	5.48900497358255	5.3877615934199	5.17601642035568	5.52405555669736	0.272732317202169	0.470935267805996	0.819784379107259
Merged-chr18-82526052-4	chr18	82525571	82526571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-28392.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.55534180966147	3.5566163168716	3.40591109396054	3.25651985092085	3.55088814395611	3.42068854329768	-0.337974275203408	0.573331674077773	0.870083020603392
Merged-chr5-64381017-4	chr5	64380536	64381536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	86906.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	7.15486350524518	7.06818379769899	6.99530620083665	7.25082745503791	7.29865574585619	7.29039373996622	0.302981855173024	0.193191105350738	0.580368455990476
Merged-chr5-31194111-4	chr5	31193638	31194638	+	938.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	834.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	7.56885379153912	8.02626977873715	7.76853672092342	7.76281220900045	7.97651420838029	7.94544259793601	0.134756033044291	0.578128372910924	0.872350675561659
Merged-chr19-25050950-1	chr19	25050450	25051450	+	556.0	f0_balb.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	51421.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.35156183555245	3.18427862570943	3.23821777636285	3.36008233786832	3.35508754353091	3.42312916700191	0.465588804146601	0.442826177045055	0.803396339134839
Merged-chr8-85025615-4	chr8	85025097	85026097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	-310.0	NM_001357202	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	8.05801170187188	8.44883235577258	7.37058941805207	7.92778556166333	8.28251815217988	7.40359136499747	-0.160698375962934	0.772906427881418	0.943931380748419
Merged-chr4-134704396-4	chr4	134703892	134704892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207237)	promoter-TSS (NM_207237)	-102.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	6.70282069832517	6.60557148789216	6.54253319119045	6.45997815962789	6.34184806168189	6.4402227165072	-0.340683470883845	0.193949969683752	0.581296310830689
Merged-chr14-31432843-3	chr14	31432464	31433464	+	724.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3136.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.14910241641084	6.21009324640221	6.07689287785681	6.56637587607269	6.33242424875162	6.16057240454036	0.364168342933379	0.20715010204628	0.597920729067479
Merged-chr1-59912924-4	chr1	59912421	59913421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037725)	promoter-TSS (NM_001037725)	-85.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	8.36280235971549	7.99755387609943	7.89847134761815	8.27619465972316	8.1457737201318	8.19532404466575	0.138331490020186	0.556315449077293	0.86357390983939
Merged-chr13-21832143-4	chr13	21831634	21832634	+	964.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175657).2	promoter-TSS (NM_175657).2	24.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	3.29491676013645	2.92280375435777	2.78964968009504	3.0389266703619	2.86743222818851	3.1158469065374	-0.0759769896442168	0.917679794558346	0.981718564389729
Merged-chr6-91704971-2	chr6	91704471	91705471	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	20904.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.01459038534031	4.75178271367483	5.36146381832831	5.53818657752648	5.30611349369655	5.27314055201064	0.664889454219753	0.0874684677362505	0.39213772970894
Merged-chr15-66742743-4	chr15	66742245	66743245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	71975.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	6.20896175394985	6.03731626298154	6.14071707760663	5.77485860083358	5.74450910180496	6.13899656177688	-0.425579442399323	0.165972391405768	0.541109862183596
Merged-chr3-108380458-2	chr3	108379958	108380958	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026831)	TTS (NM_026831)	3283.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	2.05976997883831	2.06539510069937	2.38967284394915	2.15366034860504	1.89441110939176	2.0067287343231	-1.17991204039192	0.225920634742013	1
Merged-chr2-150672169-4	chr2	150671670	150672670	+	895.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3930.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	5.97991590076052	5.70866542490892	5.85231799269669	5.38636068353025	5.50102994389819	5.29123927628031	-0.829999514703557	0.0118079563472225	0.112883117835339
Merged-chr3-88408855-2	chr3	88408355	88409355	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	1542.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	4.69212000161354	4.20368169779638	4.24109239950658	4.33915322320881	4.4443558698152	4.44624338365599	0.0107294669575969	0.981814593602496	0.99582830941535
Merged-chr5-64318961-2	chr5	64318460	64319460	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	B4A|SINE|B4	88603.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.50455853546611	2.36534262970731	2.45926809569601	2.46083817766893	2.2944801289156	2.65761048407458	0.182571375999117	0.824730510634107	1
Merged-chr8-45410284-4	chr8	45409782	45410782	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357316)	promoter-TSS (NM_001357316)	98.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	6.37468646337109	6.63599595054219	6.45971808929173	6.58611786907179	6.8903270773821	6.75445574324571	0.405930514850311	0.134632087511171	0.490439383589701
Merged-chr8-126582065-1	chr8	126581565	126582565	+	590.0	f1_balb.idr	Intergenic	Intergenic	11371.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.70146795988872	2.65872396358722	2.66923321848428	2.79616033778512	2.58094889622693	2.80492369015835	0.269652993914958	0.716957846540319	1
Merged-chr7-116445039-2	chr7	116444539	116445539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1581.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	5.3943599257391	5.42007750501386	5.81113507429078	4.88602552529516	5.02692565595084	5.3646273077258	-0.894616494153241	0.0187106047345882	0.154743265953247
Merged-chr4-101170562-2	chr4	101170062	101171062	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	94720.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.26746179954267	4.67338442795892	4.64611858628295	4.64357654880346	4.6786315320208	4.78753547313992	0.38822687121357	0.369265858631982	0.7539906644021
Merged-chr11-3182008-1	chr11	3181508	3182508	+	1000.0	f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11455.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.76815344559593	6.07683385003708	6.22529934748664	4.62006896790245	4.30049246969866	6.69827276355079	-0.471869307190817	0.729573823350401	0.930635866770147
Merged-chr5-122379965-4	chr5	122379471	122380471	+	952.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024216, intron 3 of 7)	intron (NM_024216, intron 3 of 7)	7463.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	2.79976241081388	2.62846696983069	2.96511695867736	2.6653419841815	2.48915077484904	2.68148094040224	-1.04353569416572	0.178546385661286	0.559819415860437
Merged-chr16-92301226-4	chr16	92300730	92301730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138743)	promoter-TSS (NM_138743)	-73.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	5.84238156758512	5.82695968146408	6.02893357626056	5.82538635263253	5.79362943039047	5.8093654700167	-0.153377854761715	0.610679397636062	0.885760303284144
Merged-chr16-10417501-3	chr16	10417006	10418006	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	5568.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	5.49840630828993	5.51141617583971	5.96341352506491	5.62777772463607	5.76177918298699	6.18447232546961	0.373277528456019	0.295044988217062	0.691990077927385
Merged-chr7-110891699-4	chr7	110891250	110892250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 15 of 20)	L1MEd|LINE|L1	-13235.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	6.03583158354513	5.94529216471959	6.19161759408152	6.06558132560737	6.01580305206517	5.94505350554277	-0.0712278249463585	0.807352816469488	0.954557080558103
Merged-chr14-33240604-4	chr14	33240104	33241104	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	23781.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.44380920017406	5.54806903606282	5.76171796807901	5.13217882264881	5.17796566342913	5.82247183707902	-0.346672246276144	0.369400761878302	0.754116709983023
Merged-chr4-136357417-1	chr4	136356917	136357917	+	661.333313	f1_balb.idr	Intergenic	Intergenic	45819.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	3.76419702571875	3.62323993508445	3.71244031582735	3.38969753830939	3.38004122528421	3.62866525461702	-0.855643828098859	0.134813172117034	0.490770198429984
Merged-chr1-128643676-4	chr1	128643147	128644147	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51348.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.70265227140377	4.08802589387098	4.08676119233972	3.83020052522484	3.98882949850405	3.89751086971047	-1.20325163361135	0.025357459576376	0.188640455648734
Merged-chr11-78360456-7	chr11	78359968	78360968	+	819.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13758.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	4.35781477508868	4.32846854631719	4.38387689059206	4.24094657085134	4.30537909182274	4.40809702066437	-0.103484185270213	0.815388302051006	0.956370078970016
Merged-chr17-28294592-4	chr17	28294096	28295096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-18934.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	5.51888363376259	5.78846527304903	5.63316963726653	5.88146945244455	5.81230801558352	5.42629011606704	0.144459176445824	0.667753269238116	0.908813236401378
Merged-chr16-20302404-4	chr16	20301876	20302876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005767)	promoter-TSS (NM_001005767)	-14.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	6.22671826058822	6.31142358092945	6.6011921877548	6.36114057888466	6.29240944372297	6.49463901580128	-0.000223448092433922	0.999371885836873	0.999920050950963
Merged-chr8-70719298-2	chr8	70718788	70719788	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	745.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	6.73243165114909	6.96485460533663	6.81264150966283	6.18677839857724	6.2477263839127	6.10794700068362	-1.0535527312139	9.24095426431052e-05	0.00265511506362137
Merged-chr18-34961720-1	chr18	34961220	34962220	+	569.0	f1_c57bl6.idr	Intergenic	RMER16-int|LTR|ERVK	-7369.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	2.92730622708879	3.06543392618073	3.21938268987014	3.0993864701475	3.00119646738167	3.17943718181247	0.0904291677696552	0.891642306646851	0.974877243573474
Merged-chr4-133967315-4	chr4	133966832	133967832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016957, intron 1 of 5)	CpG	659.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	7.44190188905712	7.64925890647829	7.23268205216763	7.28802193079475	7.21943637157777	7.41423313615213	-0.229728599759153	0.351167500054145	0.739086949987195
Merged-chr18-77941675-2	chr18	77941175	77942175	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	intron (NM_001195633, intron 1 of 43)	3208.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	2.62314606896525	2.48611688094526	2.45091726743441	2.67333545092845	2.61061363960003	2.78064579860126	0.91909187237856	0.239517553700609	1
Merged-chr4-135271286-2	chr4	135270786	135271786	+	798.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	1474.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.17587503831473	5.32365772112176	5.02386982818954	5.09424540624515	5.04967855941859	5.05313988798202	-0.257482837627621	0.479308881126079	0.824178515809639
Merged-chr11-79461236-2	chr11	79460736	79461736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 30 of 57)	C-rich|Low_complexity|Low_complexity	22795.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	3.72973061470471	3.58668183821368	3.985774946412	3.47812351360633	3.84722592622923	3.61071596275458	-0.359566382089065	0.535373351590242	0.853511885485043
Merged-chr15-102463991-2	chr15	102463491	102464491	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4821.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	3.01312026882007	2.80543018597075	3.05752750454637	3.05180586349227	2.95522076656608	3.24105276464843	0.56077435209964	0.414183758836955	0.785669718575296
Merged-chr11-97438068-2	chr11	97437568	97438568	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12092.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.00024977549975	4.39799707671733	4.21113102874413	3.73138349539762	3.34653015545648	3.6889984186026	-2.03882533967364	0.000418466781110379	0.0091219648920569
Merged-chr11-116424257-4	chr11	116423761	116424761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9833.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	8.31154999617809	8.18185779262219	7.7770714084599	8.18495356524275	8.50704913899776	8.21025907720272	0.275101474491471	0.271605684559179	0.6689720175125
Merged-chr4-10977191-4	chr4	10976710	10977710	+	884.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30409.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.64253657385622	5.51245040522499	5.63282459282724	6.13248751431593	6.35738927976953	6.17711647316145	1.12158386969028	0.000186967963098812	0.00473439752694035
Merged-chr7-140953358-4	chr7	140952866	140953866	+	898.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2595.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	7.25613223812448	7.25456859785488	7.13814926028639	7.15290806295829	7.13144480281181	7.32431981006535	-0.0312699460848309	0.89427401748061	0.975430981798867
Merged-chr11-101975135-2	chr11	101974635	101975635	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	-8120.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	4.18372723957462	4.23875575718163	4.53873153529662	4.39392923759218	4.28306212379188	4.67876769930454	0.343387782769735	0.460978338352308	0.814802506471053
Merged-chr11-85689511-3	chr11	85689008	85690008	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	30236.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	3.84147103188568	3.92627367248273	3.67023333308202	3.66194800526761	3.66024318336806	3.63129225244976	-0.569782953287846	0.291946936432077	0.689235268138963
Merged-chr1-152533959-4	chr1	152533475	152534475	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	91242.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.64334669866649	5.44099329669512	5.79989265041841	5.74167517233552	5.80890774190546	5.78729143058525	0.282829403261626	0.375722197611925	0.758886605954294
Merged-chr19-44422347-6	chr19	44421836	44422836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14627.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	7.10402534779321	6.96411894726485	6.41337082318937	7.33082209014037	7.3203569876742	6.53553750160768	0.382986764722708	0.262981278730349	0.661009551056846
Merged-chr13-77045505-1	chr13	77045005	77046005	+	683.0	f0_balb.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	89963.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	2.19920875355375	2.00009940594378	2.25728736794688	1.81844998811019	1.96377416195549	1.86226813954856	-2.31590482472872	0.0357382272934802	1
Merged-chr11-116088656-2	chr11	116088082	116089082	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1587.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	3.70813192862939	3.39664755480503	3.6519428121979	3.45813380532004	3.35075572360223	3.45586449055853	-0.630128387375171	0.284148953015441	0.681879369534166
Merged-chr4-150472718-3	chr4	150472220	150473220	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179454.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.4016876583962	6.47102643053042	5.91746740547464	5.44625189279814	5.62471023624186	5.53582305173317	-1.3303597105519	5.10570632030443e-05	0.00160922580113595
Merged-chr14-33235841-3	chr14	33235336	33236336	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	19013.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.62150095947845	4.59081750048646	4.78952548359892	4.04073717108763	4.29137600536159	4.63618437701485	-0.82630939252124	0.0768844466568965	0.365342835893166
Merged-chr10-17624350-4	chr10	17623858	17624858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98870.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.58653365039736	4.60507069835889	4.73658570937379	4.83955120732285	4.78656468386445	4.6434399050953	0.294964809682023	0.463973329385214	0.816078656690924
Merged-chr5-139457562-4	chr5	139456984	139457984	+	926.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	LTR106_Mam|LTR|LTR	3050.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	7.42158067750898	7.66018113297786	6.92974871372169	7.08454051846977	7.33553367478487	6.72841559413613	-0.442823156420105	0.15336170033844	0.522260798958866
Merged-chr2-180126344-3	chr2	180125838	180126838	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	6972.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.76253644354828	5.70398118346082	5.7117595274771	4.64322093631521	4.55931252108227	5.03988860288927	-2.04915290502622	5.43283651615821e-08	4.16640977729486e-06
Merged-chr8-105328268-2	chr8	105327768	105328768	+	744.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177699)	TTS (NM_177699)	1904.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	2.98993390865147	2.98344959767822	3.43073880789066	3.32205728502899	3.40182967323701	3.16840688308439	0.665861150175888	0.32468733870969	0.717571954298961
Merged-chr19-32939843-3	chr19	32939316	32940316	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182239.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.00048928546855	4.05720472475711	4.07478453034328	4.1698315154934	3.99874443422839	4.18895405292137	0.211121431914879	0.660393741238461	0.905944150044841
Merged-chr5-34761163-2	chr5	34760663	34761663	+	969.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-577.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	4.53204431523003	4.60875993944673	4.5169032622114	4.84967622685155	4.72381266170212	4.82432105129964	0.568324273782203	0.15962184418112	0.531877190382303
Merged-chr13-23708034-2	chr13	23707534	23708534	+	626.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010424, exon 2 of 6)	exon (NM_010424, exon 2 of 6)	2820.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	4.60030053732106	4.19640801574597	5.06107680663819	4.85919842275535	4.87653203494268	4.78332703174645	0.421988334325437	0.370402842766306	0.754830392126051
Merged-chr3-137947038-4	chr3	137946514	137947514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28459.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	7.23182530834329	7.39537657959403	7.17734128547802	7.30969392847333	7.59785367650842	7.41832389789951	0.260162901734941	0.279252060323409	0.67682285501122
Merged-chr12-98257627-2	chr12	98257127	98258127	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	1832.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	3.31985873006078	3.18025770462314	3.31833387798168	3.20551007083982	3.23735833091535	3.38904185463814	0.0124242463979871	0.983913511174792	0.996459527787537
Merged-chr5-99244830-2	chr5	99244330	99245330	+	959.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	8097.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.56586242155742	6.45196936938081	6.83533944246937	6.87587006898516	6.91107411761528	6.62928874660639	0.315686384123734	0.24621674840458	0.643321082749741
Merged-chr2-27715403-4	chr2	27714900	27715900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4817.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.6946512139593	8.1355236600524	7.95065063211678	7.60392323292588	7.81831749440224	7.46335822824207	-0.425841786704764	0.0885279177153395	0.394972170362358
Merged-chr2-59127913-3	chr2	59127421	59128421	+	629.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	32762.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	3.84421422029183	3.75003588947219	3.72445288612019	3.82121456475171	3.89298599582574	3.79488088408099	0.206190218250606	0.69181590759614	0.9184939224729
Merged-chr13-37592274-4	chr13	37591777	37592777	+	913.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-233761.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.88022208178596	4.52355098981017	4.91262316382125	4.72242897119496	4.64111741150249	4.83491609799608	-0.111992615132317	0.787422153567691	0.94877064431094
Merged-chr11-11808963-4	chr11	11808456	11809456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163359)	promoter-TSS (NM_001163359)	6.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	7.04114447999993	7.68255137849656	7.07516646109192	7.17337096650845	7.5554445976144	6.96409096810873	-0.0679725092008265	0.827096094472905	0.959351941492659
Merged-chr16-35907622-4	chr16	35907138	35908138	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30832.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	5.00388674175829	5.28774641972439	4.86798607949331	5.27762522050396	5.12623749873196	5.12052428655313	0.20724479941356	0.584186828097685	0.874532107931945
Merged-chr11-60698988-3	chr11	60698482	60699482	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	-708.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	4.36880867877412	4.60801500620149	5.03127890778895	4.4831605790706	4.44236923106972	4.56958921351845	-0.460786844712547	0.313533071678709	0.708121563861612
Merged-chr2-126476287-4	chr2	126475794	126476794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15259.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	7.74862796113682	7.72460903198678	7.64360280315405	6.73695323262169	7.22301197951226	7.17818101395044	-0.946100834784294	0.000222475346995494	0.00545698127205137
Merged-chr13-98956466-4	chr13	98955985	98956985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	28080.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	5.95045529775964	6.2024560455167	5.92164815711236	6.44814289353609	6.72495458192527	6.12898078878432	0.719140373328117	0.0220535511695298	0.172319643695581
Merged-chr5-148907825-2	chr5	148907325	148908325	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153572, intron 3 of 10)	intron (NM_153572, intron 3 of 10)	20822.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	3.34882233477905	3.41603174301807	3.48647445015325	3.2202721562306	3.19699159026467	3.45120134980413	-0.509590918669628	0.403085311845016	0.778546630802364
Merged-chr5-135459719-3	chr5	135459260	135460260	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65214.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	4.78066946319976	4.88506780888341	5.10945264824887	4.49391282413603	4.95453898215819	4.67272146153035	-0.431871159533875	0.309417991597152	0.705003874352637
Merged-chr2-156967325-6	chr2	156966824	156967824	+	819.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355394, intron 1 of 15)	intron (NM_001355394, intron 1 of 15)	24379.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	7.14494552183081	7.31802994772735	7.18993873364147	7.3147056497907	7.64641346359717	7.10701680203323	0.246575972683027	0.346023135056098	0.734487066881322
Merged-chr4-144896519-4	chr4	144895963	144896963	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	3326.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.94698296559111	5.11748671339062	5.11137679701253	5.15647525369496	4.90888094689565	4.9663421697846	-0.0973637452535173	0.794499169914254	0.950744971081973
Merged-chr6-65127447-2	chr6	65126947	65127947	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	17283.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	2.7943429747166	2.88138842083563	3.197205414628	2.72962346255485	2.67137612327848	3.21539064270417	-0.345354949489111	0.65443409650586	0.903779343778232
Merged-chr11-120348516-4	chr11	120348023	120349023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038126)	promoter-TSS (NR_038126)	-28.0	NM_009609	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	8.58264145813034	8.51414682653441	8.43026290336769	8.5209731323252	8.64634447036943	8.3750232778639	0.0153350371126645	0.941436293331661	0.986985070753211
Merged-chr5-96998305-6	chr5	96997740	96998740	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	551.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	7.70219816298797	7.32036227150138	7.43175019419528	7.51919288954896	7.36742048823213	7.47844973715173	-0.0633383652423775	0.793947336214045	0.950531747588938
Merged-chr17-7399162-3	chr17	7398667	7399667	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-13862.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.15378191803534	3.0749591644931	3.35724042622982	3.73003526680811	3.47355438159172	3.59283540912338	1.61751918871349	0.00950536961774495	0.097033835744488
Merged-chr11-102433244-2	chr11	102432744	102433744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 3 of 13)	exon (NM_008175, exon 3 of 13)	2922.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	6.11834193395535	5.73375356061926	5.9388082861417	6.30767081156809	6.2056220372949	6.30109182948677	0.561377877883179	0.0602091328102874	0.317728010996667
Merged-chr11-106789946-3	chr11	106789459	106790459	+	918.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355677)	promoter-TSS (NM_001355677)	707.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	6.26307837046066	6.09229488708043	5.74792281523528	6.03448892845185	6.15148588596315	5.86480671172885	-0.0575087713729612	0.856484948807382	0.966529239953755
Merged-chr19-16065517-2	chr19	16065017	16066017	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-67314.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.37220525394411	3.17164240326475	3.45943172629126	3.37122055814192	3.46359066047591	3.47636169992434	0.399103422127695	0.507927949481498	0.839522621885284
Merged-chr9-66350407-4	chr9	66349921	66350921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-29.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	7.87148569664075	7.97067969227884	7.60719748094613	7.8394415690348	8.15600973168756	7.81036908701847	0.170619367630673	0.482083881220541	0.825329793705448
Merged-chr19-55792094-4	chr19	55791612	55792612	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50302.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.27133757257389	4.96422030225126	5.07363216768637	4.93835241627509	5.45427468396267	5.17266139024335	0.2159164674855	0.579955668438178	0.872702388227068
Merged-chr11-98204236-2	chr11	98203736	98204736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	931.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	7.12593007527967	7.16637176524863	6.85935775688396	7.34684125579205	7.46816518228524	7.02109903527411	0.354300433751481	0.17706845571431	0.557884930520031
Merged-chr2-148492395-4	chr2	148491868	148492868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48833.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.8512918263556	6.05956566479645	5.7714415445287	5.70644841904446	5.83169467583563	5.88354262352221	-0.17818764507851	0.563724078477478	0.865992481769395
Merged-chr18-4347798-3	chr18	4347263	4348263	+	750.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5190.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.66226506047666	6.01501458934462	5.87002448362192	5.91486575588389	6.1163341740188	6.13449199881751	0.348708721505242	0.259265002482148	0.656829933215643
Merged-chr18-68219157-2	chr18	68218660	68219660	+	759.166626	f0_balb.idr|f0_c57.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-8786.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.75164904569514	3.52369200311146	3.52667518406301	3.26413132181432	3.28044902909982	3.48897139734361	-1.0061562836911	0.0929635094464327	0.406223489865496
Merged-chr7-34132211-2	chr7	34131711	34132711	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207212, intron 1 of 7)	PB1D7|SINE|Alu	1057.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	4.99863988815676	4.77842291726592	4.89601103971661	4.73278559147264	4.41803978494816	4.52566620298343	-0.775040275426257	0.061462529989991	0.321585499302469
Merged-chr4-133011470-4	chr4	133010951	133011951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146155)	promoter-TSS (NM_146155)	-55.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	4.50601583073655	4.39771593270818	4.76935887371915	4.35479582474662	4.37795419698877	4.72761777953006	-0.175204846099048	0.69707243388963	0.919839094614619
Merged-chr19-10857664-2	chr19	10857164	10858164	+	799.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133804)	TTS (NM_133804)	12115.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	3.6053877240017	3.23985282069839	3.43869490397796	3.26828935506898	3.20103990620275	3.40031109709028	-0.587662847325819	0.344777123147488	0.733357572096838
Merged-chr19-41442623-6	chr19	41442128	41443128	+	998.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57558.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.75632041133203	5.70909796851964	5.74937258930945	5.91024089709827	5.74884148413281	5.9565791779844	0.233605339160437	0.443509181965216	0.80383358753004
Merged-chr1-58745760-2	chr1	58745260	58746260	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	15208.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.91372263116619	5.52997710130413	5.40355321332222	5.03915042106515	5.24646205782087	5.24214084151905	-0.9005702907891	0.0133864386842942	0.12309151530652
Merged-chr7-55928830-3	chr7	55928308	55929308	+	775.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 30 of 30)	MLT1E1|LTR|ERVL-MaLR	33685.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	3.61327761173311	3.61981559962481	3.5786929776566	3.49461641048268	3.42144295067552	3.94083155456926	0.0843733824738214	0.885959566989561	0.973636976161493
Merged-chr2-105399237-11	chr2	105398867	105399867	+	925.8485109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009037)	promoter-TSS (NM_009037)	-48.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	5.24417945704454	5.06828804395304	5.02840292258697	5.17308719889842	5.05814863285443	4.8253243532437	-0.18205472361019	0.629453945124528	0.894239437697144
Merged-chr17-86677087-3	chr17	86676587	86677587	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76777.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	5.10904588951925	5.10890346065395	4.66715674509134	4.08860820605185	3.89261830755122	3.89231014683442	-2.73125421224408	3.87568196921666e-08	3.07423970728865e-06
Merged-chr18-12741793-3	chr18	12741302	12742302	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042419, intron 1 of 5)	intron (NM_001042419, intron 1 of 5)	447.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	6.92996331228288	6.98305179836794	6.87004363628732	7.0295277722793	7.28081467827431	7.09358036194429	0.323685244077718	0.186084937032174	0.570600259489168
Merged-chr10-40317008-4	chr10	40316518	40317518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-14830.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	5.48385504069846	5.59944964667932	5.77142788883196	5.60835955531955	5.61042312084582	5.51249601070906	-0.0626532077283947	0.846552856894149	0.964033094055515
Merged-chr5-64371780-4	chr5	64371298	64372298	+	920.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96144.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.62103822908743	5.62346090291798	5.77476405121039	5.73440164314968	5.50589642278567	5.65613522992253	-0.0716473480778766	0.822358680388821	0.958041123079214
Merged-chr7-132318334-2	chr7	132317834	132318834	+	552.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028578)	TTS (NR_028578)	-1106.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	2.92176366486889	2.84454148025677	3.01596845401762	2.77854180502039	2.93825445567568	2.91148499504988	-0.225541090584216	0.746377332795039	0.936300236930265
Merged-chr11-77216170-4	chr11	77215682	77216682	+	891.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177710)	promoter-TSS (NM_177710)	-243.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	5.44815134108703	5.29699960199231	5.14036458533955	5.32787759726785	5.35165243881825	5.40010154086117	0.0953071540440338	0.78300992743318	0.9468504131997
Merged-chr17-35837054-4	chr17	35836479	35837479	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	1322.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	6.10110006733214	6.14159932797994	6.24823799538515	6.25374343178316	6.38418670805174	6.65610052309388	0.453837299308699	0.113516951508874	0.450160309091308
Merged-chr11-61861917-4	chr11	61861418	61862418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6826.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	6.93534955676436	6.58485108423947	6.72327062444473	6.83451355325926	6.90154150791341	6.61590103650041	0.0623709290814305	0.816862158756742	0.956754861188725
Merged-chr12-85348524-4	chr12	85348027	85349027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-9165.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	7.64637292586594	7.83827622020907	7.91324217760058	7.74460631086259	7.99209523004269	7.65828945278586	0.0177895144449371	0.939661974043837	0.986728675730885
Merged-chr5-150663900-2	chr5	150663400	150664400	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 1 of 7)	RLTR1D|LTR|ERV1	1712.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	2.29199632074559	2.26127582597801	2.62827297474753	2.18031906000152	2.47565152965161	2.39508810662815	-0.269277649838174	0.761205080836265	1
Merged-chr2-72975879-2	chr2	72975379	72976379	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001018042, intron 3 of 6)	intron (NM_001018042, intron 3 of 6)	3402.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	3.09672526896366	3.04523828243055	2.92976139012796	3.18530426308553	3.10307161737974	3.18513229810569	0.558996472753011	0.395051283619395	0.772579826044138
Merged-chr1-106232628-3	chr1	106232126	106233126	+	949.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60757.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	6.79774252706001	7.02348674318113	6.69130848193979	6.49705403680814	6.59335764006971	6.26343039066114	-0.603506567763333	0.0290284161829973	0.204545276175912
Merged-chr11-69059630-4	chr11	69059122	69060122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-153.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	7.60129806866085	7.59206522680512	7.49305234493322	7.57811748995063	7.97653393829669	8.04325666159055	0.455481657186707	0.0602368569674293	0.317741973578996
Merged-chr16-10495155-4	chr16	10494647	10495647	+	911.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	RLTR35B_MM|LTR|ERVL	5366.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	3.80952001836001	3.89469771803076	4.08635783758043	4.07516847352742	4.16822522158343	4.15431171403057	0.611560124952626	0.213645528001397	0.606786261185113
Merged-chr11-105125800-2	chr11	105125300	105126300	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-625.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	5.20247369393474	5.17349144076122	5.08953000055206	5.34611934426717	5.07537841376518	5.15436819633863	0.0716258213801541	0.841963736064387	0.963002495523594
Merged-chr12-119483463-4	chr12	119482955	119483955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	40045.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	3.8926750595606	4.1313878302291	3.61486846806476	3.78821018768625	3.72982815288421	3.68778546996066	-0.540545781318679	0.330478747067035	0.721952410959523
Merged-chr2-32084716-4	chr2	32084147	32085147	+	918.3988039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	22.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	5.34995151409023	5.68093489646987	5.61113037643668	5.48953853428557	5.72491941182042	5.61893533754033	0.121572801740165	0.716252161015833	0.926569584146506
Merged-chr11-8610072-4	chr11	8609555	8610555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	54480.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.85059931512334	8.00575299414484	7.42356596961365	7.56146194921039	7.71403353618721	7.402597455583	-0.320674164144948	0.221005830831349	0.61561513090473
Merged-chr2-66144963-4	chr2	66144481	66145481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20188.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.21621307343368	6.33746237567575	6.14487035629175	5.85301436367206	6.02378106132524	6.07485055552792	-0.434322075723704	0.132990970199278	0.487941073871765
Merged-chr6-125685618-4	chr6	125685127	125686127	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-4792.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	5.31331571149783	4.90937912189968	5.40169838677927	5.27940301536456	5.29702947545543	5.18667055667523	0.0846479191370397	0.820745548787406	0.957821788404693
Merged-chr8-11411904-3	chr8	11411425	11412425	+	733.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 16 of 47)	intron (NM_009932, intron 16 of 47)	-66004.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	2.84178202228651	2.6764085460621	2.81056270434636	2.81381988373512	2.57036916013305	2.63140654728179	-0.547843556855125	0.467015173734976	1
Merged-chr13-98693020-7	chr13	98692433	98693433	+	928.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1898.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	6.73347742709888	6.89204563354327	6.6061890439485	6.84987471886378	7.05333269844173	6.42085673152378	0.0943675993157378	0.747147770323292	0.93657138060321
Merged-chr5-121425472-1	chr5	121424972	121425972	+	934.0	f1_c57bl6.idr	intron (NM_172722, intron 13 of 23)	intron (NM_172722, intron 13 of 23)	27002.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	2.14615665542678	2.04494174599673	2.10164774479107	2.41234276800917	2.58606675482921	2.45251672062903	3.1434135585133	0.00243034133282494	1
Merged-chr15-67146874-4	chr15	67146356	67147356	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	30026.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.7033582057767	4.57169537228631	4.85584078724122	4.30059681401061	4.18729997460932	4.67000684938484	-0.796837787033298	0.0779337764026611	0.368611422948782
Merged-chr15-36609142-4	chr15	36608657	36609657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008774)	promoter-TSS (NM_008774)	-184.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	7.64723091971948	7.72312688450893	7.36406274047357	7.66262678023298	7.81331104460059	7.50811209536815	0.114390872294957	0.636437026890742	0.897158055063138
Merged-chr9-32118079-3	chr9	32117581	32118581	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 1 of 21)	intron (NM_001195632, intron 1 of 21)	1945.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	2.72633707288426	2.80286924809854	2.91038973474002	2.72343034358841	2.74462924708964	2.74135568165199	-0.39195490182594	0.586974071169797	0.875769926947203
Merged-chr5-121996935-4	chr5	121996454	121997454	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 2 of 22)	L1MC4a|LINE|L1	50871.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	2.91512919356738	2.96554989148617	2.63331144122076	2.75768355923588	2.67116282309472	2.95980766032013	-0.26779015817503	0.724285734213084	0.929311721511015
Merged-chr4-48418654-2	chr4	48418154	48419154	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 15 of 18)	MLT1H2-int|LTR|ERVL-MaLR	54809.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	3.79614201927066	4.19566096627574	4.17046945993352	3.52718949721635	3.66588141680924	3.71286856993725	-1.37556997074091	0.0130723118365604	0.121377509408823
Merged-chr8-66445614-2	chr8	66445114	66446114	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	MTEb|LTR|ERVL-MaLR	40916.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	3.9106552303482	4.12422388716213	4.10806843391483	3.99555225136978	3.92858536852093	4.3058713733332	0.0784800694173706	0.875824563979795	0.971136321106511
Merged-chr4-101717779-4	chr4	101717254	101718254	+	893.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122899, exon 1 of 19)	5' UTR (NM_001122899, exon 1 of 19)	347.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	4.85044771335289	5.50332028900181	5.09946999998629	4.30339445555392	4.64545912091312	5.3149749869661	-0.766202114138451	0.12970610063268	0.481747320512613
Merged-chr5-124015974-4	chr5	124015490	124016490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16270.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.13173880535134	6.53440668348275	6.50150411350081	7.37954398562076	7.18259952853496	6.74149454915978	0.562373374404359	0.0812901443848536	0.377202226967148
Merged-chr18-9489679-6	chr18	9489281	9490281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39627.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	7.73670873306615	7.69193356226418	6.36513566645713	7.17868977591172	7.46687490850586	6.20444558935834	-0.516148369375456	0.537836406469436	0.854867563479425
Merged-chr5-125390761-2	chr5	125390261	125391261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-744.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.629222635539	9.31883028629234	8.66837509487323	8.74744438642341	9.27544918973777	8.75730997628706	0.0505943808241939	0.860118788572608	0.967441103100897
Merged-chr6-85451401-4	chr6	85450906	85451906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-99.0	NM_007638	12468.0	Mm.289900	NM_007638	ENSMUSG00000030007	Cct7	AA408524|AL022769|Ccth|Cctz	chaperonin containing Tcp1, subunit 7 (eta)	protein-coding	7.16670565353946	7.47220592140372	7.08873112784001	7.1914752587495	7.23833516961165	7.12051862378567	-0.110095083382197	0.659118181016532	0.905229020277098
Merged-chr2-48766755-4	chr2	48766268	48767268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47341.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.38061565556398	4.05469883338667	4.07018076198123	4.28615726145168	4.26454253523467	4.23615224023273	0.218767905038848	0.64506916162786	0.900402236225432
Merged-chr15-78326619-3	chr15	78326119	78327119	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	629.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	6.29743920370924	6.14085204903206	6.42073055096749	6.88078156208063	6.48752339198395	6.63593892115404	0.633758946296813	0.0255682560001736	0.189530819177055
Merged-chr5-90339783-4	chr5	90339290	90340290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	26395.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	6.10109195198932	6.16424440721067	6.11209201345381	5.88817178990002	6.10452659717331	5.84290614863544	-0.285265931589248	0.33322869554943	0.724158199463997
Merged-chr19-61227254-4	chr19	61226743	61227743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 2 of 11)	CpG-7695	1175.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	8.50293299183866	8.54147898677126	8.25311250265455	8.3034190295407	8.61919175038058	8.14643877036431	-0.0883762848914579	0.710146873159054	0.924247274831755
Merged-chr8-82773396-1	chr8	82772896	82773896	+	877.0	f1_balb.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	730.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	6.21474378231498	6.66469486451648	6.2706098509075	6.29365434918517	6.16693828900863	6.20617788876039	-0.306058933448518	0.302637386427375	0.699276353509593
Merged-chr15-97849639-7	chr15	97849144	97850144	+	936.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.8762602713478	4.64413953357862	4.60020467986817	4.36160756576953	4.30400279749026	4.10883138412585	-1.12534208206738	0.0124223282608222	0.117099477730429
Merged-chr3-89266570-4	chr3	89266058	89267058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026767)	promoter-TSS (NM_026767)	97.0	NM_026767	68563.0	Mm.272927	NM_026767	ENSMUSG00000042737	Dpm3	1110001H19Rik|AV117483	dolichyl-phosphate mannosyltransferase polypeptide 3	protein-coding	5.83887898810715	6.20461566119308	5.99855449284591	5.98463312689425	6.0412949389502	5.78719447507121	-0.130810241411071	0.673101170205544	0.911178391176776
Merged-chr5-35631933-2	chr5	35631433	35632433	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43170.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	3.2405089307792	3.35615129538302	3.60217153761241	3.61528798704686	3.12901627325376	3.292834628239	-0.158837962811781	0.806311237006032	0.954125791654011
Merged-chr15-62053731-2	chr15	62053231	62054231	+	828.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	14474.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.22582538953495	4.41457305770362	4.72913058270246	4.33819261684566	4.41040135697248	5.2515718975091	0.618898976514095	0.236817707348078	0.633237835240546
Merged-chr4-151995186-7	chr4	151994701	151995701	+	884.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 1 of 3)	CpG	978.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	4.51660031872601	4.11219246296582	4.53119225321151	4.46313286204237	4.01794142895029	4.25769659433657	-0.372366242173299	0.449992155882103	0.80809209683043
Merged-chr4-132843228-4	chr4	132842742	132843742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146154)	promoter-TSS (NM_146154)	-73.0	NM_146154	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	5.71983712640815	5.49442993409336	5.49355013461291	5.54172475420403	5.4863875859857	5.00749272009368	-0.375002926067564	0.30427851717023	0.70084663420418
Merged-chr1-33873772-4	chr1	33873263	33874263	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	intron (NM_177235, intron 3 of 6)	33858.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	4.09461035850622	4.34059796442065	4.03071158192435	4.17597342982421	4.12668896882503	4.65122389376511	0.433355056333416	0.389896507190891	0.769401696657453
Merged-chr13-112137049-4	chr13	112136553	112137553	+	912.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-151398.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.0819464358218	4.73703148242843	5.10316922460804	5.12814260460987	5.11260429347729	4.95776868468939	0.202928744802082	0.598054618652818	0.880560949852866
Merged-chr10-117716106-2	chr10	117715606	117716606	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5348.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	5.01395978319417	4.99355132747447	5.34919018325787	5.28364373502822	5.47466985449098	5.32192786457257	0.510873592777614	0.157858936182004	0.529433117755483
Merged-chr10-117224398-4	chr10	117223907	117224907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026570)	promoter-TSS (NM_026570)	100.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	8.04087467577374	8.23291803766265	7.74745704018126	8.02599287649631	8.18035845983818	7.88997862876548	0.017605480562895	0.942100041851386	0.987097394617189
Merged-chr4-135874643-3	chr4	135874161	135875161	+	882.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-815.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	7.72490266235009	7.76559845365116	7.52395981518095	7.71327322812447	7.95626561122502	7.60074726520125	0.132835673677795	0.574721483108026	0.870862343796639
Merged-chr12-32816216-3	chr12	32815697	32816697	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4138.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	2.9650451525273	2.72027044925742	3.19546103892612	2.83295238328179	2.67478482255598	3.10448194844933	-0.436287027094843	0.56382212944423	0.865992481769395
Merged-chr15-66447556-3	chr15	66447049	66448049	+	856.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 7 of 11)	intron (NM_019457, intron 7 of 11)	53361.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	2.74420455920961	2.63641777138673	2.85200166312357	2.99477520907219	2.79700628244338	3.042598291703	1.02372068297985	0.157936934988806	0.529476893092205
Merged-chr7-19500493-5	chr7	19499992	19500992	+	987.8444210000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7839.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	6.33490453887212	6.18682572324189	6.45204003728585	6.72246728812524	6.8252473923024	6.52961832652833	0.619329750456918	0.0230724233441838	0.177612193692557
Merged-chr5-101992566-2	chr5	101992054	101993054	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	YREP_Mm|Unknown|Unknown	77367.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.9965365787985	4.17548779235041	4.03617332469687	4.49257781332352	4.45194547084247	4.30018866058457	0.941701623769374	0.0428649166168173	0.259545733324536
Merged-chr12-91779164-4	chr12	91778652	91779652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	CpG	7284.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	6.63821100310457	6.88360109073741	6.76387851380605	6.53993350525093	6.45576728372191	6.54642667623615	-0.405323638362637	0.119397552036859	0.461901428745779
Merged-chr7-130859064-6	chr7	130858654	130859654	+	793.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	5.94340210670895	5.96120912926547	5.71631798570909	5.84617902591574	5.96329255022958	5.97923940717728	0.0753490776666076	0.80294474495816	0.953422605427866
Merged-chr3-60616333-4	chr3	60615836	60616836	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 6 of 7)	intron (NM_001253711, intron 6 of 7)	115157.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.21454593442121	5.81506836967558	5.60012345810642	5.51703733352237	5.76855518470164	5.42912869519443	0.035897397312353	0.922104356355025	0.982542868764899
Merged-chr16-32703526-4	chr16	32703037	32704037	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30383.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	5.20655637268734	5.20930647655553	5.38321158816213	5.53473383383982	5.52061936736186	4.96206307507941	0.2290818647724	0.543613007338336	0.857551302506722
Merged-chr7-43351368-3	chr7	43350871	43351871	+	897.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271019)	promoter-TSS (NM_001271019)	30.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	4.3701767943297	4.64696915834188	4.6376225569618	4.51719265244376	4.45246299205751	4.62515047034132	-0.0678990812783797	0.874352076373162	0.970754540400126
Merged-chr6-97410954-2	chr6	97410454	97411454	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	48332.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.14498113808865	3.79242884055613	4.62418214556543	4.26244594516084	3.71149315054626	4.22324335391399	-0.384001055633949	0.508594503948884	0.839831940555244
Merged-chr3-88151011-3	chr3	88150537	88151537	+	867.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	8665.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	4.91390256831307	4.93630504486147	5.04132222663596	4.96814637527337	4.82418246457836	5.13750334897354	0.0243875031384428	0.948903029243287	0.988169196639905
Merged-chr11-96967761-4	chr11	96967268	96968268	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9920.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	8.31894125427217	8.41846683556777	8.11459281402512	8.29606604269369	8.79610974633517	8.19126359224272	0.238033387643885	0.353810247625842	0.74093981667364
Merged-chr4-154899159-4	chr4	154898635	154899635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-92.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	6.54957463240903	6.73843103451605	6.85239789372748	6.52446835604731	6.57674352826342	6.86867266751085	-0.0897709297320888	0.742012008320203	0.935092237846751
Merged-chr4-133854931-3	chr4	133854415	133855415	+	890.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	19816.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.05688254410108	4.90603412929447	5.1974798124656	4.26468302920878	4.2768946438994	4.00557673212384	-2.09764297356	7.19479522990885e-06	0.000302334071968326
Merged-chr9-89224794-4	chr9	89224278	89225278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	(TTTG)n|Simple_repeat|Simple_repeat	13394.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.89652621340584	5.62059957318369	5.51481111829055	5.39745922287081	5.52889025866863	5.36166795234689	-0.483640867347807	0.152320844788445	0.520263755512759
Merged-chr19-55773215-2	chr19	55772785	55773785	+	593.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	31475.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.67846568351967	4.74020355726998	4.75871999724559	4.66659144361723	4.87566161008615	5.0689093079589	0.340457718215752	0.396525232394526	0.773652887901204
Merged-chr19-37523882-3	chr19	37523376	37524376	+	912.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26542.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.70898429150889	4.52709418883224	4.62949514026378	4.66498281804028	4.77312994503967	4.6139500712738	0.162906581380478	0.690665427113315	0.917915728386653
Merged-chr7-16016149-2	chr7	16015649	16016649	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	-16654.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	4.09492049095464	4.23904318355109	4.69247425614293	4.13618697916308	3.92705726443587	4.61663367025981	-0.286622159511268	0.593498950710724	0.878539957258253
Merged-chr16-20498851-4	chr16	20498344	20499344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172265)	promoter-TSS (NM_172265)	27.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	5.64972712049093	5.84156492048312	5.75779731583749	5.81128650688483	5.70425640157668	5.54365866867894	-0.101476720583319	0.748344290901309	0.936970247789039
Merged-chr5-63969000-4	chr5	63968502	63969502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-105.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	7.26017451341861	7.13311269297285	7.24780774892996	7.28240286786842	7.29965636663589	7.28219981573943	0.112653118069389	0.623259674188421	0.891344246843871
Merged-chr7-24300258-2	chr7	24299758	24300758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-709.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	2.96989704204768	3.55491470925368	3.541473142657	3.38854761975093	3.16820688597137	3.50855842364281	-0.088303462578074	0.898144629556413	0.976261391798139
Merged-chr10-26791994-4	chr10	26791495	26792495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	19483.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.63756879195819	5.64026544746525	5.52069397693917	5.5128862386276	5.34213234437349	5.40432318396313	-0.354344684212513	0.277591773856638	0.674803713782557
Merged-chr9-20581411-4	chr9	20580887	20581887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172919)	promoter-TSS (NM_172919)	59.0	NM_172919	244721.0	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	3.95815703067261	3.83541026449068	4.42435587313329	4.18241083513375	3.98805332279588	4.20241017627178	0.106711452349923	0.838004438053861	0.962319011876864
Merged-chr15-80710732-4	chr15	80710237	80711237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-576.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	7.16502473594536	7.36750857104746	7.23750062434531	7.2051994888544	7.46834233083147	7.08170228981824	0.0167448609201449	0.946696865873448	0.988007649185823
Merged-chr11-75337400-2	chr11	75336900	75337900	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 4 of 16)	intron (NM_026653, intron 4 of 16)	10983.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	3.96715407926771	4.05858958217081	4.45884144874103	4.33217425279236	4.1635071074139	3.93662727596716	-0.0294966907323076	0.954197845321253	0.989495550016789
Merged-chr9-49050191-3	chr9	49049681	49050681	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5400.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	5.13934886009781	5.18272682681261	5.08172086781948	3.91165460622548	3.87311274813767	4.07176059665239	-3.21988297785107	3.8423196546152e-11	5.55055093439621e-09
Merged-chr7-115124961-3	chr7	115124470	115125470	+	900.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173696.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.1307036204491	5.21762785961463	5.23548022986243	4.98239017937538	4.71791029456486	5.2371454550494	-0.450473506565297	0.243973013283345	0.641102368207187
Merged-chr2-178416665-4	chr2	178416168	178417168	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081289, exon 2 of 4)	5' UTR (NM_001081289, exon 2 of 4)	2134.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	3.44223413020148	3.38004847535391	3.47534222618084	3.46364945288162	3.18254828564631	3.4923669472575	-0.198128208849819	0.743267981580637	0.935569808809646
Merged-chr9-37255682-4	chr9	37255187	37256187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	51.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	7.70747630928089	8.15410899950852	7.47609231641977	7.42614436611582	7.6528305655244	7.37930806172743	-0.467066391143143	0.0881914834788761	0.394168607042505
Merged-chr5-121451384-4	chr5	121450863	121451863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	1111.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	7.06868283244727	7.15725838425751	6.84459322187616	6.89230664487039	7.29456236296568	7.2463010065493	0.18267423291252	0.488877366394557	0.829423271678195
Merged-chr6-126910498-1	chr6	126909998	126910998	+	597.5	f0_balb.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	11341.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	5.98167583381414	6.16005650651167	5.81056237166995	6.23660343750682	6.22470416102742	5.84646666776019	0.21246097258075	0.496920293209041	0.833355041868306
Merged-chr16-7420066-6	chr16	7419547	7420547	+	870.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	350212.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	2.84055047616944	2.60455673430714	2.74990675774687	2.78721786991642	2.85852544812716	2.94420090640614	0.655920797789854	0.368733428070822	0.753594740654151
Merged-chr5-66140172-4	chr5	66139697	66140697	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	10781.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.44965260379565	5.85085072617352	5.63899338970084	5.77962650342427	5.32941666056013	5.44176223133225	-0.241828225261485	0.495213129520418	0.832371001962164
Merged-chr2-160362848-1	chr2	160362348	160363348	+	748.0	f0_balb.idr	TTS (NM_010658)	TTS (NM_010658)	4217.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.69504272554472	5.68225938235749	5.5518817245822	5.8221384622399	5.70581645452047	5.99323678824558	0.337600956450146	0.284187926887379	0.681902442968206
Merged-chr2-181364905-1	chr2	181364405	181365405	+	570.0	f0_c57.idr	promoter-TSS (NM_144894)	promoter-TSS (NM_144894)	-26.0	NM_144894	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	6.8238488006649	6.87919945332662	6.76072632223862	7.00478479451051	6.94054630633235	6.52720533516597	0.0420500039346532	0.876039951163126	0.971162730906517
Merged-chr18-56975349-4	chr18	56974850	56975850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029909)	promoter-TSS (NM_029909)	29.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	6.61614986544394	6.93717279333018	6.86160838838964	6.63791361526057	6.43845229684338	6.54192245941834	-0.430204784717235	0.107985022181854	0.438924220883579
Merged-chr17-74523581-4	chr17	74523039	74524039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4756.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	6.14616927215228	6.29741034767847	6.14108530605815	6.0022423519876	6.27704815487205	6.30330121996134	0.000492754000038346	0.998639838611284	0.999766741353215
Merged-chr16-4940219-2	chr16	4939719	4940719	+	852.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	-634.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	3.88981247382758	3.68063713611246	3.67281978490046	3.66424663823592	3.66226780015447	3.84561268095436	-0.112656397497742	0.835048988845364	0.961451138529569
Merged-chr11-20204513-4	chr11	20204018	20205018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B1F|SINE|Alu	3106.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	6.94832963069436	6.80066575202001	6.46617966841024	6.8189313514308	6.94713733697332	6.65353511059286	0.0850466359597602	0.759597344285083	0.940523183674791
Merged-chr15-99341242-4	chr15	99340743	99341743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	MTD|LTR|ERVL-MaLR	29239.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	4.0474147175923	3.92643804089481	3.92625931514034	4.07591282829225	3.77392573461661	3.89455837923056	-0.158370577359393	0.756498615350776	0.939629132869937
Merged-chr18-56459156-6	chr18	56458619	56459619	+	827.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	26987.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	5.09564467424403	5.00288402492688	5.08572533111142	4.88130591233921	5.05406747393147	4.82188068591107	-0.274548101945377	0.46600368103456	0.817284254190344
Merged-chr9-96717926-2	chr9	96717426	96718426	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	1519.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	4.44898225299741	4.6026478203189	4.56667445528839	4.48747305510133	4.47068108789714	4.37640654424737	-0.228277995109206	0.592657252006561	0.878142077122388
Merged-chr17-71299680-2	chr17	71299179	71300179	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	B1_Mus1|SINE|Alu	11332.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.42923641153027	6.57760867105347	6.69909680222629	6.14503057960806	6.2360523257718	6.53544349531204	-0.425715705845927	0.134631955113771	0.490439383589701
Merged-chr14-63410689-4	chr14	63410192	63411192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6495.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	7.32542121865691	7.86420167385788	7.53189934998848	7.42399420743472	7.72325661090679	7.14292138088275	-0.1967750643806	0.488125610803992	0.828960679980268
Merged-chr8-108765001-4	chr8	108764504	108765504	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	50360.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.70141545812424	5.98689350570247	5.94943875263353	5.45908667737466	5.50844064324719	5.7747754250663	-0.556972872162072	0.0866153671911453	0.389875727323211
Merged-chr14-121873347-4	chr14	121872849	121873849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4921.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	5.43325669657956	5.55676650278983	5.28553066569259	5.09331707530643	5.24737944925431	5.46990156557477	-0.32716856026464	0.355259575261843	0.742212688350285
Merged-chr19-17144356-4	chr19	17143854	17144854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	188236.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	5.65258917603862	5.55054540227451	5.73026766988421	5.0783156532337	4.89562788018949	5.33088118596705	-1.08114262203356	0.00237534141335636	0.035245000464531
Merged-chr11-68483373-4	chr11	68482876	68483876	+	901.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 5 of 18)	intron (NM_177320, intron 5 of 18)	-19643.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	3.64348510790036	3.23217087506673	3.20194284030378	3.05544223579068	2.79018341072079	3.27525636600225	-1.41227262439879	0.0532918921619993	0.295991930878587
Merged-chr14-72629987-2	chr14	72629487	72630487	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	80016.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.06028274210642	2.95063593369222	2.9527367595584	2.96603543035959	2.7829319973102	3.08418561278665	-0.220366499288769	0.750506685823126	0.937564211523741
Merged-chr7-123294091-3	chr7	123293519	123294519	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	75896.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.49495099711023	3.37626359391043	3.84870484235644	3.63492390979558	3.73549203893737	4.09353667223113	0.833475633583645	0.15889673824497	0.530791272065819
Merged-chr12-111712713-2	chr12	111712213	111713213	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026511)	promoter-TSS (NM_026511)	240.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	6.73315817226229	6.46543032701611	6.5247866646686	6.66550774681583	5.9988634079797	6.1942811359676	-0.426746455480777	0.178573322628628	0.55984058736607
Merged-chr3-54102395-4	chr3	54101870	54102870	+	777.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-53687.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.3274731683746	3.39222346789053	3.56605069883323	4.13585702601525	4.37063458726703	4.24280763493747	2.87330340771488	7.83212083665163e-07	4.38261674899871e-05
Merged-chr4-95687759-2	chr4	95687259	95688259	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108338.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	4.10483583555723	4.22501172695978	4.35324887178898	4.49798081569654	4.53199347178556	4.0352227099916	0.419978343645132	0.385831897890405	0.766674506964127
Merged-chr4-107363116-2	chr4	107362616	107363616	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4668.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	2.27140307182374	2.31401336630633	2.40448401407314	2.40779654059212	2.36218439243609	2.60296884867187	0.821977380662611	0.319063036492503	1
Merged-chr2-117107413-2	chr2	117106913	117107913	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13658.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.92373004619823	4.98283113696579	5.40848567840423	4.90963075744304	5.09398541911518	5.24084898609674	-0.0542226623724388	0.89031372222881	0.974513293810689
Merged-chr11-83577598-2	chr11	83577098	83578098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011338, intron 1 of 3)	MER74B|LTR|ERVL	1038.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	6.94288634230569	6.94946277543708	7.2215771125871	6.94111079437256	6.97707414387316	7.07582641821295	-0.061274450580495	0.805206253792569	0.953798874874682
Merged-chr10-24670812-3	chr10	24670309	24671309	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 6 of 24)	intron (NM_001308329, intron 6 of 24)	41350.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	3.2925087413602	3.38630985415675	3.30937057147745	2.9039528404111	2.84004495927236	3.03330999918908	-1.9381444904305	0.00512806188345457	0.06225500046666
Merged-chr13-112666828-4	chr13	112666299	112667299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6033.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	6.62740359146903	6.56543122971842	6.19745699875281	7.09089660670481	7.37500388372949	6.9851071784154	1.05006771406965	0.000206029925385675	0.00513735032409086
Merged-chr17-69215897-4	chr17	69215423	69216423	+	907.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56567.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.10531815295625	4.1884449365465	4.36998700960251	4.2352368808359	4.16947055931493	3.7472725243254	-0.40246092853143	0.437892666094277	0.800320094896931
Merged-chr5-121204680-6	chr5	121204231	121205231	+	923.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011290, intron 1 of 6)	CpG	230.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	7.23179331929714	7.48493946626082	7.02798449845104	7.20614141525838	7.23820747263799	6.958299890037	-0.185015963060125	0.478857043892915	0.823902254052681
Merged-chr13-58215690-4	chr13	58215189	58216189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152234)	promoter-TSS (NM_152234)	-36.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	8.02076088075648	8.34981938434421	8.17875760360221	8.28869410814647	8.25430550141481	8.0463317711995	0.0182278529967398	0.93528274583059	0.985837609291391
Merged-chr8-46896194-2	chr8	46895694	46896694	+	841.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-90693.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.67249405692206	3.64593203281055	3.41895176846872	3.53203247313096	3.28198128655392	3.75700712111592	-0.209241867486399	0.729706474409327	0.930635866770147
Merged-chr14-67712529-2	chr14	67712029	67713029	+	890.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175384, intron 4 of 14)	intron (NM_175384, intron 4 of 14)	3081.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	3.43494459155275	3.52880544249834	3.53160411527007	3.3504142771346	3.0360813867584	3.97701300725002	0.0686801634656465	0.921681135623443	0.982542868764899
Merged-chr12-3284727-3	chr12	3284231	3285231	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B3A|SINE|B2	25238.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	5.57978508003379	5.98474055026885	5.85807733061278	6.12344181781458	6.22920093292025	6.10517751071757	0.587174824498132	0.0567797434969074	0.307186534258171
Merged-chr15-96710789-2	chr15	96710289	96711289	+	993.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	7.44650917695496	7.55180719766104	7.22172813635109	7.5050486802394	7.86173615887928	7.30363038212399	0.246456248301013	0.353530899175332	0.740736914917923
Merged-chr5-125333926-2	chr5	125333426	125334426	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7168.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.94149886075905	5.11714818934071	5.47512323338029	5.11794819416313	4.9445221518222	5.40143358579177	-0.0591161080526715	0.88176556370848	0.97289513266204
Merged-chr7-29169561-3	chr7	29169079	29170079	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	-631.0	NM_001358852	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	3.9735084465659	3.63514344810918	3.81991514380951	5.08517552543509	4.89472695835081	4.93544092013427	3.18769503167985	8.55874295217593e-10	9.50808923317297e-08
Merged-chr19-3943632-2	chr19	3943132	3944132	+	748.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161428, exon 8 of 10)	exon (NM_001161428, exon 8 of 10)	8446.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	3.05044211389978	3.34584278613369	3.73296220949692	3.55483356604233	3.42132114477271	3.75437467456708	0.646222934664109	0.330462151398329	0.721935903527415
Merged-chr9-31130480-2	chr9	31129980	31130980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1319.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	2.78276617520156	2.83086528663649	2.91339218086582	2.82699181773193	2.80005576489153	2.92644469777883	0.0418859698739363	0.952287715762081	0.989068549972429
Merged-chr11-61470263-3	chr11	61469761	61470761	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15170.0	NM_001347545	76293.0	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	6.2781021333926	6.14704032122493	6.42340424336191	6.40321236916063	6.26039458208728	6.35374216223071	0.0957376600372118	0.730805413743617	0.931137366655114
Merged-chr1-36271665-4	chr1	36271175	36272175	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1750.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	7.17794817579455	7.20430296019952	7.09181584766969	7.49340494280589	7.85256183122485	7.62268724511449	0.747562109986078	0.0018189518031651	0.0287030595708649
Merged-chr8-22895828-4	chr8	22895328	22896328	+	820.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36289.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.59110603540564	4.40342704560173	4.65997557593658	4.73309789378454	4.71631951925292	4.72586910125388	0.42014225449886	0.306983253842494	0.703099001056797
Merged-chr2-31108405-4	chr2	31107902	31108902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-11902.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.88110459127318	5.76580270444881	5.7642922207122	5.56063459296396	5.83529166692625	5.58075429013871	-0.237295943573554	0.455928996973009	0.81123938862117
Merged-chr1-156450322-2	chr1	156449814	156450814	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	24014.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	6.8928711336599	6.96100768155572	6.70873829511723	6.16680462312638	6.56984685534225	5.90037748712686	-0.957133076609722	0.00232790418379083	0.034707086781019
Merged-chr6-124806157-4	chr6	124805657	124806657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2504.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	7.94050031567046	7.87850017356995	7.81667620061676	7.75344122987833	7.95105289518448	7.83153750860809	-0.04411774132412	0.838507217042843	0.962518552953479
Merged-chr18-60753013-4	chr18	60752483	60753483	+	874.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4318.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.72475976908085	6.75575715292556	6.36483002642285	6.13610540870039	6.23406016527364	5.84406738370245	-0.886016426849621	0.00328289183505968	0.0450515352993535
Merged-chr16-95711733-2	chr16	95711233	95712233	+	628.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 4 of 10)	exon (NM_011809, exon 4 of 10)	9326.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	2.69611744218638	2.71635701214289	2.82274073710887	2.8671179410636	2.54859437456838	2.77389245591229	-0.0547384235078047	0.941756070530945	0.987058762320129
Merged-chr17-83274108-6	chr17	83273475	83274475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58692.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.56499154795212	6.5433366676967	6.43460970259066	6.72731440848418	6.80341151394097	6.81135871582734	0.412226520765033	0.105000859964548	0.432306361005943
Merged-chr16-45032829-4	chr16	45032343	45033343	+	901.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-61168.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	5.29709132727266	5.18095226477943	5.32559639521446	4.48778760476435	4.42506699122833	4.90844389291384	-1.47276828224527	0.000297433456020399	0.00691694885649675
Merged-chr4-130797987-3	chr4	130797490	130798490	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5453.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.17628451890668	8.10472407995613	8.18950897566092	8.31517717642064	8.36992800440752	7.94164158001005	0.103544402443846	0.649309949502907	0.902147045789438
Merged-chr1-36065629-3	chr1	36065201	36066201	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2699.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.75369654736284	5.45021078796444	5.44542443733885	5.46735357796278	5.72718769508139	5.35081198550923	-0.0480151530823349	0.890431814040255	0.974528422443459
Merged-chr10-40847400-4	chr10	40846896	40847896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 7 of 14)	intron (NM_027879, intron 7 of 14)	35747.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	5.36661504364263	5.47866428995446	5.46852819154093	5.60613930083919	5.61033213388846	5.58838585895672	0.313379395151727	0.330163920168858	0.721739162185012
Merged-chr10-94355243-4	chr10	94354737	94355737	+	987.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43288.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.88492281655599	6.59787159069784	6.25396548137307	6.98225555618565	6.98811778599916	6.57692802954971	0.396677650386589	0.193060058133094	0.580258086808407
Merged-chr14-17915344-3	chr14	17914826	17915826	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-66318.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.88654772519224	2.80770488174688	3.08925482625766	3.00318318709876	2.60590064181798	2.74092050708238	-0.674177692549773	0.37212587242004	0.756099728816208
Merged-chr7-96483064-4	chr7	96482560	96483560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-141096.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.88158286194282	6.27602179390633	6.43431331548215	6.02472329102603	5.87068138977091	6.13998778575935	-0.346912614871197	0.276062621447356	0.673393624422867
Merged-chr3-32397654-4	chr3	32397152	32398152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31987.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	7.85183883971849	7.93739467934113	7.64025606811471	7.99160595114758	7.68242970721269	7.87922933256463	0.0475062717410766	0.838593571341075	0.962538562826178
Merged-chr2-166746684-3	chr2	166746189	166747189	+	888.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-32857.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.01441142051793	5.07455579710443	5.2351056937219	5.55806418146353	5.5838388839664	5.42361758571243	0.848092645044704	0.0134640242653236	0.123491460655759
Merged-chr11-100704335-4	chr11	100703808	100704808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-37.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	7.05738896989818	7.18415023012075	7.04062839232971	7.31924598245071	7.55132442766635	7.40640723459405	0.50036535667746	0.0346394241952095	0.228146409145879
Merged-chr18-74207865-4	chr18	74207349	74208349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-31.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	4.6194806591981	5.17491041108947	5.30196474034664	5.12275515724396	5.21959596594218	4.85551147659965	0.0479690363747564	0.910160111712448	0.979811917966302
Merged-chr6-99096244-4	chr6	99095757	99096757	+	862.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67959.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.24368972326189	4.50050926708191	4.12124483207538	4.13172791438626	4.11717147535405	4.19057697572615	-0.447315497895204	0.346570447521319	0.734711689104559
Merged-chr19-46395770-4	chr19	46395285	46396285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016860)	promoter-TSS (NM_016860)	-50.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	6.7465338580013	6.96797787856468	6.7609055144071	7.27626546781175	7.25865425759814	7.16802052767457	0.612784589187298	0.0121598837880582	0.115278524579782
Merged-chr9-85401967-2	chr9	85401483	85402483	+	831.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74833.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.66987404253219	3.39522831547825	3.67825981480221	4.3204815976485	4.16964188345031	3.69488980194782	1.62715411937461	0.00496401468965965	0.0609122156462468
Merged-chr2-170205622-6	chr2	170205011	170206011	+	923.35553	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62836.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.47174443535373	6.37953499196285	6.6292838727787	6.31438212303308	6.53510494870479	6.37389205807587	-0.118982035381834	0.664044159826183	0.907483408305124
Merged-chr6-136654615-4	chr6	136654119	136655119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	7274.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.0119808704034	5.92610212957864	6.01824094045725	6.62286162645328	6.42671950705881	6.33570176344969	0.813933824649502	0.0038914658544058	0.0508801211208985
Merged-chr10-81354954-2	chr10	81354454	81355454	+	993.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2537.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	3.68961930255716	3.51961642022338	3.76121700307404	3.71143465876809	3.36928377915969	3.83015409554856	-0.0475990123603139	0.934908173599651	0.985727573165395
Merged-chr13-81208227-4	chr13	81207707	81208707	+	964.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	244133.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.57686629874129	4.93182440021665	4.97470536398294	4.60851076905685	4.66496853751686	5.03838504957882	-0.138595598306503	0.744949709842851	0.936032341688524
Merged-chr17-6962543-2	chr17	6962043	6963043	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	3.6049540134939	3.45684039364103	3.90405918879599	5.37298144416888	5.58304753437262	5.394323487954	6.38937606040435	6.5729297574052e-13	1.3021912839385e-10
Merged-chr18-73703186-4	chr18	73702652	73703652	+	956.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155448)	promoter-TSS (NR_155448)	589.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	6.13110043137248	5.91186339688039	6.01684377387509	6.39273693027432	5.65366062290287	6.28573606901146	0.205834121718324	0.551355639189322	0.861159830076033
Merged-chr11-79340228-4	chr11	79339724	79340724	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	CpG	332.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	6.95999519192736	6.65661392897459	6.55600716521479	6.96605100821011	6.38864034308849	6.52542922562314	-0.142531991446891	0.640262223019575	0.898404369829977
Merged-chr13-34216815-1	chr13	34216315	34217315	+	638.0	f0_c57.idr	intron (NM_001033167, intron 4 of 10)	MTC-int|LTR|ERVL-MaLR	53851.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.78263198445467	2.79317576060905	2.99292544850056	3.41812851171183	3.3501157453536	3.76415009979483	3.20839954095608	3.30539253431464e-05	0.00111767128366116
Merged-chr13-64120969-3	chr13	64120479	64121479	+	837.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 2 of 11)	intron (NM_001001321, intron 2 of 11)	8351.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	3.31661687812111	3.1739664706896	3.19935953211164	3.68943611901469	3.26605495147578	3.44813362098316	0.953772764694874	0.130052969000866	0.482195010397444
Merged-chr9-99480701-2	chr9	99480201	99481201	+	724.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165957)	TTS (NM_001165957)	10280.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	3.2279153951424	3.03044264005049	3.13400705718753	3.29916595602541	3.17486915512348	3.26449206285511	0.472582231629014	0.457511502530541	0.812307535537887
Merged-chr15-91180819-1	chr15	91180319	91181319	+	688.5	f0_balb.idr	intron (NM_011994, intron 3 of 9)	MTD|LTR|ERVL-MaLR	11188.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	5.73859006816204	5.67178735897295	5.88848413550633	5.96037843882467	5.78303401967437	5.69676521845108	0.106620508847161	0.732166224437022	0.931715588770791
Merged-chr8-108778334-1	chr8	108777834	108778834	+	580.0	f0_balb.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	63690.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.06371939676818	2.99982319707495	2.98418302036829	2.52902799694503	2.49084112793684	2.68742139768798	-2.76818169986027	0.00110182817710481	0.0194156965185382
Merged-chr18-39021039-4	chr18	39020542	39021542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	27897.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.04721451944406	3.19380201251499	3.49588855247408	3.1299540907923	3.40322453230917	3.5147880023168	0.413849796464226	0.529734863658028	0.851048470960073
Merged-chr18-67392347-4	chr18	67391853	67392853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 2 of 3)	intron (NM_026473, intron 2 of 3)	1622.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	5.48347147797038	5.30981905833086	5.23925740046634	5.28596010352906	4.92377486174064	4.98741630532676	-0.568127686076452	0.124226179657863	0.471601469447498
Merged-chr18-75218980-1	chr18	75218480	75219480	+	643.5	f0_balb.idr	intron (NM_027727, intron 14 of 16)	L1MC5a|LINE|L1	78337.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	2.65784928011228	2.70534936484661	3.07828449820651	2.51351261565171	2.29226197420466	2.6313570593782	-2.04453264923451	0.020193875518269	0.16255122319088
Merged-chr9-90112056-2	chr9	90111556	90112556	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	2764.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.56481966896137	5.73946929709991	5.70471325586612	6.22647378717045	6.09364682422563	5.9454979725735	0.755730759570176	0.0130691164749335	0.12136775040695
Merged-chr6-124894208-4	chr6	124893713	124894713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6013.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	5.44312122934524	5.18563900140744	5.03873089557143	5.29477398234185	4.96322140494815	4.95402166362573	-0.328832390481221	0.391630600840251	0.770665004131955
Merged-chr2-13559511-4	chr2	13559003	13560003	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14808.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	5.37534427426999	5.32193819032392	5.21565708969993	5.22013334687423	5.05114850566633	5.48944768280918	-0.11715967671269	0.746178558343041	0.936287949695029
Merged-chr1-33765738-4	chr1	33765225	33766225	+	947.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359275, intron 14 of 15)	intron (NM_001359275, intron 14 of 15)	-7975.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	3.69805430105602	3.47861787682608	3.72034105337684	3.81964735616922	3.72771396637171	3.51799710079694	0.225519517785713	0.688684561450241	0.917235946766438
Merged-chr15-86228399-4	chr15	86227912	86228912	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	Tigger5b|DNA|TcMar-Tigger	13953.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.38968609796418	4.31501888004691	4.11704093104072	4.01397917025115	3.97892617951204	4.03851196883075	-0.789259386638963	0.0991034806378871	0.419759234012969
Merged-chr15-3271475-3	chr15	3270991	3271991	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	514.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	5.30171948282798	5.52205536582994	5.53212200394129	5.86743732983856	5.83560571903987	5.80809393760339	0.713827956651221	0.024766170007782	0.185970893782828
Merged-chr19-11494730-4	chr19	11494222	11495222	+	904.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	2684.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	5.1594243402189	4.84488001757026	4.77818179535087	5.17516233414924	5.2291413183682	5.00166330313113	0.420107294861526	0.277685505093458	0.674855968126621
Merged-chr16-92694037-2	chr16	92693537	92694537	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3292.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.59588863480596	4.64153271515068	4.58132919384789	4.28059815477952	4.53460055774489	4.09170495625646	-0.694740959566349	0.133185203628435	0.488240127919411
Merged-chr1-131086369-2	chr1	131085869	131086869	+	917.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	11474.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.10059112812104	6.69529353693554	6.56247368797576	6.96704179832141	6.77332907456434	6.32511697772388	-0.139659645533966	0.656466883187847	0.904654860421566
Merged-chr10-111101861-2	chr10	111101361	111102361	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62941.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.25479953409463	4.1866343675856	4.26748004094607	3.98625080891413	3.75848794338208	4.15795312048454	-0.785875486935673	0.113933741373263	0.450859089500984
Merged-chr12-111377765-4	chr12	111377279	111378279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183016)	promoter-TSS (NM_183016)	-61.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	7.98368647604317	7.7695872555781	7.74461141100087	7.85488610190959	7.66908436908676	7.57864431380438	-0.189783599943366	0.409253046396517	0.78265059720895
Merged-chr2-156393904-4	chr2	156393407	156394407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-928.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	6.72102229216086	6.31175964884152	6.1957523503138	7.02172627798809	7.07664257385586	6.46858229083303	0.71506312513921	0.0245631546494579	0.184880232661428
Merged-chr5-108268820-4	chr5	108268318	108269318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026106)	promoter-TSS (NM_026106)	-79.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	6.90977089281149	7.05311663466009	7.16842000535356	6.93782588427379	6.94939648352392	7.33684985113881	0.054513646188099	0.835421674595085	0.961706261746066
Merged-chr16-55812016-4	chr16	55811509	55812509	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	10129.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.88623971268663	4.34517707965485	4.05299827608699	4.10636445534524	3.58509889334319	3.9246729091575	-0.670424887892524	0.228199252208871	0.623147576440797
Merged-chr18-39623366-4	chr18	39622878	39623878	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-136133.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.09624509263546	4.113068843207	4.3011444060485	4.35530761316741	4.39116628900269	4.41118885663882	0.594263732591831	0.189661503123038	0.575646702603018
Merged-chr11-32581325-1	chr11	32580825	32581825	+	572.0	f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	48059.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.45712841276579	3.31438470699692	3.62370205110365	3.61522176075525	3.29920759020596	3.4835861228145	0.0153097847198453	0.979682068824221	0.995316120471372
Merged-chr4-155562242-5	chr4	155561675	155562675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138671)	promoter-TSS (NM_138671)	-206.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	7.446122554863	7.55128454584621	7.39342741603081	7.35749097897131	7.54291044703909	7.59090660416226	0.0457888996949742	0.842029196555482	0.963002495523594
Merged-chr17-12315502-3	chr17	12315003	12316003	+	688.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	3157.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	3.24937254726021	3.3274313710449	3.51376394896538	3.58864725662621	3.83817269447276	3.63824493949359	1.23879792336528	0.0350351110662077	0.22970829966663
Merged-chr10-98941059-3	chr10	98940538	98941538	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	25886.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	2.9166112856185	2.86848579164849	3.01019742705298	3.03125370605763	2.83748318235384	2.70740961027171	-0.301952680306187	0.674521056855172	0.911852710156386
Merged-chr8-13869711-4	chr8	13869197	13870197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	56.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	5.42976580753815	5.60756906281764	5.68842359572019	5.79075734329624	5.33823024148781	5.01808228431555	-0.276969739781985	0.472636452883362	0.820550293768681
Merged-chr6-118562298-4	chr6	118561767	118562767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081112)	promoter-TSS (NM_001081112)	-11.0	NM_001081112	232339.0	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	4.89720825534173	5.4006780418916	5.20691529854113	5.10818952302593	5.23668424389818	5.03136477476085	-0.108102358165242	0.778739636127726	0.945520893795831
Merged-chr13-56626706-4	chr13	56626200	56627200	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 6 of 16)	L3b|LINE|CR1	17114.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	3.10446324542789	2.99654998902238	3.14719250208289	3.04230771335541	3.10406543974947	2.98224795076397	-0.152453222677141	0.817269056593229	0.956754861188725
Merged-chr2-170170391-4	chr2	170169891	170170891	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27716.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.46189817305902	4.97469953608536	5.29379576878264	4.97215639925752	4.92128078644168	4.98120233983978	0.0242219394977687	0.956098894729611	0.989807313282509
Merged-chr11-111312352-2	chr11	111311852	111312852	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246188.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.91486858706572	3.24162860767338	3.29751172346784	3.08108285273002	2.99868533179935	3.14649859630394	-0.373584287372564	0.579759194326708	0.872596104506489
Merged-chr5-88567439-2	chr5	88566939	88567939	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	B1_Mur2|SINE|Alu	2399.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	3.54987010522333	3.43551746639601	3.48177525812446	3.40410474389075	3.42921966636793	3.60466884942873	-0.048867666390292	0.932521056853257	0.985198035762844
Merged-chr1-33877953-2	chr1	33877453	33878453	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	intron (NM_177235, intron 3 of 6)	29668.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	6.43984007433828	6.60544963884317	6.29422016042687	6.27059213566928	6.31327001350584	6.5043020647042	-0.164363018223548	0.555610838422698	0.863289501518253
Merged-chr11-31733141-4	chr11	31732635	31733635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61273.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	5.55120934407227	5.52625402599596	5.41545142194871	7.18277352301064	7.36669090101892	7.034635765771	2.81057608756018	8.21490337005419e-22	7.68028853500527e-19
Merged-chr2-111126073-2	chr2	111125573	111126573	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	103527.0	NM_026248	67575.0	Mm.84331	NM_026248	ENSMUSG00000027157	4930430A15Rik	-	RIKEN cDNA 4930430A15 gene	protein-coding	1.86930066166121	2.07786135172217	1.90154132637282	2.17965394435464	2.00568981153659	2.38156537928651	1.84321900241422	0.0717706225401544	1
Merged-chr4-40776606-4	chr4	40776114	40777114	+	929.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-18729.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.15426700364004	4.25472628605134	4.30094655304051	4.28547989936054	4.30901446929162	3.98265654860639	-0.0670862193346648	0.887917484776893	0.973937891761784
Merged-chr10-127592626-4	chr10	127592132	127593132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 10 of 88)	intron (NM_008512, intron 10 of 88)	28516.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.15908875182706	6.79408052848114	7.05387798009746	7.13809812691752	7.06018856026564	6.86039602291878	0.0307605992184296	0.905906366828066	0.978562338972215
Merged-chr8-13287519-4	chr8	13287063	13288063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-450.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	7.77498553897124	8.13430091303738	8.07022311386747	7.92144312249204	8.03924417520964	7.70439189987194	-0.142050475689851	0.551566556506039	0.861290958858884
Merged-chr6-120180405-2	chr6	120179866	120180866	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13457.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.76639798312086	6.69231262672082	6.8620318542239	6.92935149580592	6.744209294529	6.47607840336589	-0.0525614081468655	0.845369603142821	0.963773214686551
Merged-chr7-25121796-2	chr7	25121296	25122296	+	672.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	10664.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	4.88159802831017	5.11861611705057	5.32725083638645	5.46735619747128	4.91799516568161	5.47480015793139	0.384806228071758	0.340923977192691	0.730599337545402
Merged-chr3-41405025-4	chr3	41404518	41405518	+	952.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88181.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	2.85909176346719	2.72320528044081	2.85583980662564	2.66961877094684	2.52848970651352	2.61834056290905	-1.16420335891806	0.125254325736649	1
Merged-chr11-119056236-2	chr11	119055700	119056700	+	854.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTA)n|Simple_repeat|Simple_repeat	-15287.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	4.6030811412914	4.29775048782415	4.43392210031969	4.1454721989126	4.15655585727638	4.4590656601586	-0.52627439952131	0.256616794766115	0.653682511929703
Merged-chr8-34107523-2	chr8	34107024	34108024	+	624.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011722, intron 1 of 6)	MTD|LTR|ERVL-MaLR	290.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	4.76946823293567	4.98391092024803	4.99452458682569	5.14237014452065	5.02925112219258	5.12713619461303	0.387838164602306	0.29922738624425	0.695964214930834
Merged-chr17-37524765-4	chr17	37524268	37525268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5189.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	5.16573276998236	5.20126487546636	5.23465705658454	5.55658921605448	5.59792227766177	5.12561365936703	0.510610856896252	0.155322398495097	0.524920439217742
Merged-chr10-94147900-4	chr10	94147387	94148387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-44.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	7.6177874082287	7.70028297185442	7.31687730451372	7.73495164675023	7.65081328539711	7.4743889607437	0.0942111753185984	0.696962276115906	0.919776642258685
Merged-chr10-60282828-4	chr10	60282338	60283338	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-1623.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.74017663830042	8.00733328825531	7.84224833483732	7.84470200873955	8.4620930983064	7.76086879161376	0.289773697611516	0.295229888447575	0.692102568263533
Merged-chr4-94901859-3	chr4	94901354	94902354	+	617.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26989.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	3.92726310562698	4.12704930265488	4.05993894800818	3.96904788278217	4.47200325134433	4.22286177415456	0.574927485359054	0.253053077751571	0.650437247995826
Merged-chr16-11423273-2	chr16	11422773	11423773	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	17625.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.89284415327874	3.85979903132719	4.05895638806184	3.67192573395322	3.49871461755248	3.84728888491719	-0.870262148336941	0.109511013440978	0.442189178744938
Merged-chr18-4279348-4	chr18	4278842	4279842	+	785.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	73611.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.12293912243558	3.13161154596357	3.15006009559373	3.31561220960335	3.14302721350134	3.39038866927918	0.616404120817879	0.329370587349787	0.721349826840182
Merged-chr1-125438154-4	chr1	125437660	125438660	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.27129286467023	5.42312958245143	5.52929973983766	5.43845701475926	5.58102807987514	5.59152360747657	0.255863052143724	0.442149059963321	0.803105441601984
Merged-chr3-51859385-4	chr3	51858898	51859898	+	899.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	198219.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	2.67244413849445	2.79632968327398	3.29445553883217	2.69386218674403	2.7372386219814	2.62205516580232	-1.28751280466743	0.107681450928064	0.438375564793892
Merged-chr15-59041809-4	chr15	59041282	59042282	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40244.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.53010311323158	4.25382873098085	3.95246540702321	4.03563601364189	3.79507367076616	4.17281528714814	-0.77241869389171	0.140473373809488	0.500760820920022
Merged-chr17-28740065-2	chr17	28739565	28740565	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-29252.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	2.40917124223263	2.44065169604729	2.53359971447999	2.51738673706324	2.30436669300257	2.6072954213539	0.106131909350402	0.896015315821096	1
Merged-chr14-25487184-4	chr14	25486700	25487700	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	28015.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.79508896929086	4.56958670563042	4.69620193215726	4.44285650363304	4.15184082840533	4.43695279367799	-0.874842020829524	0.0471314466250195	0.274860766104193
Merged-chr2-170103949-1	chr2	170103449	170104449	+	613.0	f1_c57bl6.idr	Intergenic	Intergenic	27271.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.20862685402335	2.21327176807157	2.66540278143547	2.25779837261105	1.99560203281431	2.3116577524774	-1.23001353863959	0.199070334911084	1
Merged-chr15-58803099-3	chr15	58802605	58803605	+	874.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	20322.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.89390514736303	4.84233562432057	4.50633531804651	5.38033630332432	5.40871979211454	4.76314340562893	0.97596348678609	0.0244642845470484	0.184332872245682
Merged-chr19-16701957-3	chr19	16701455	16702455	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 31 of 71)	intron (NM_173028, intron 31 of 71)	78978.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	3.3529988080684	3.1544636126056	3.14531990868107	3.29321493744559	3.14469508593607	3.59866531042101	0.509593601055534	0.432902212551539	0.79758551656855
Merged-chr5-45856641-4	chr5	45856110	45857110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172153)	promoter-TSS (NM_172153)	-58.0	NM_172153	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	7.47046803004531	7.47819446580261	7.18806133972892	7.48701567353275	7.36236471325649	7.11645374891727	-0.0820913759793648	0.742312362317473	0.935192080236037
Merged-chr7-139213290-4	chr7	139212770	139213770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-5.0	NM_001143755	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	8.13845901610548	8.34069547627004	7.69128834652782	7.80374893811155	8.07007682934772	7.71015468488832	-0.307337234687428	0.247976290466993	0.645106161833394
Merged-chr1-133025923-1	chr1	133025423	133026423	+	745.0	f0_balb.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	-507.0	NM_001302801	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	6.56034384094514	7.17546508034651	6.85219248645765	6.65682175128802	7.05025240827654	6.91058173952729	-0.00888501967873381	0.976109007103973	0.994572735300192
Merged-chr5-72552879-3	chr5	72552336	72553336	+	919.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6809.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	5.47983386349723	5.48751517493501	5.82054221592647	6.00070292046458	6.13064316722385	6.16859064049276	0.908721150169744	0.00357520183818703	0.0479428516602525
Merged-chr7-99137695-2	chr7	99137210	99138210	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	PB1D9|SINE|Alu	3434.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.50812703237823	3.39076195214969	3.7773177122639	3.7956512469347	3.5943349524843	3.94012691312155	0.742366212015956	0.196892988976369	0.584754678471847
Merged-chr7-16738354-4	chr7	16737853	16738853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198613)	promoter-TSS (NM_198613)	-91.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	5.53662124663303	5.14195489443745	5.32563633960734	5.34583752912373	5.29735391121329	5.5346403420961	0.0838674354924682	0.813793705793657	0.955940138311315
Merged-chr11-98121893-6	chr11	98121329	98122329	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 2 of 14)	intron (NM_028149, intron 2 of 14)	27787.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	6.29550799292467	6.39899117813426	6.42687601025624	6.48971853930386	6.76247739058166	6.31139048483968	0.284252051079935	0.316576139271914	0.710630932247151
Merged-chr10-58399589-4	chr10	58399091	58400091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	5218.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.48963630739268	4.49458332434754	4.76237457581149	4.47222475572471	4.4487884929823	4.71774533704697	-0.0887920379314418	0.836704688729574	0.962001762335242
Merged-chr19-17359660-5	chr19	17359119	17360119	+	909.4933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-2952.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.77032155582796	5.95259424944519	5.90099296783566	4.94511478776723	4.73438614060982	5.36861574282138	-1.67817128248541	6.52972968435206e-06	0.000278343108389122
Merged-chr17-65674772-4	chr17	65674255	65675255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-32551.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.71866348753664	5.59895088987321	5.88882346555768	5.70995928345904	5.6639305695216	5.88003879085173	0.0274241915065112	0.931006376011483	0.984748096853363
Merged-chr6-134706662-3	chr6	134706169	134707169	+	898.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	65729.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	4.98021667168428	5.04972970884461	5.06017865024766	5.09759079810336	5.22433439744418	4.60487832991538	-0.022802059946452	0.95551277439352	0.989763164889919
Merged-chr4-8690687-6	chr4	8690211	8691211	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001277149, exon 1 of 38)	5' UTR (NM_001277149, exon 1 of 38)	305.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.4040194386047	7.38988357492902	7.17511315533945	7.42187915725645	6.94713578936046	7.33770367647927	-0.127838157047896	0.624701089809603	0.892178920752419
Merged-chr7-138389243-4	chr7	138388751	138389751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	8479.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	4.33351958990425	4.48593453223707	4.60369198407009	4.19270477003414	4.12427127946016	3.83540131576657	-1.1006024046534	0.0255627411934115	0.189518031406905
Merged-chr1-93825403-4	chr1	93824888	93825888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310767, exon 1 of 10)	5' UTR (NM_001310767, exon 1 of 10)	148.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	7.35556647551168	7.32931683256583	7.8270319064855	7.35473786958007	7.32619331327297	7.26639154167404	-0.293259595771102	0.255298231166981	0.652381770743264
Merged-chr3-79128953-3	chr3	79128468	79129468	+	920.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	15919.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.99587463275842	6.03427171825299	5.98742925761644	6.71857940465889	6.65943375664633	6.18889154094576	0.906139369002975	0.00234125431292906	0.0348312334829611
Merged-chr4-6223242-3	chr4	6222740	6223740	+	952.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32135.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	3.70897885070934	3.45269835500686	3.82137677472787	4.8334336012354	5.15984358188511	4.85706697999611	3.97529405915572	7.80713684577843e-12	1.28382656652872e-09
Merged-chr14-20735343-2	chr14	20734843	20735843	+	780.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-781.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	4.84217589900192	4.86363182996153	5.24390556125395	4.66784654431745	4.57424840144573	4.61888236238557	-0.83476226086824	0.0422699339692133	0.257575735313826
Merged-chr14-103825666-2	chr14	103825166	103826166	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	18035.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.74071607449758	3.75024590448981	3.71251138909891	3.51787679781232	3.51985453317404	3.26828781243463	-1.02168622603036	0.0826246354828771	0.380277154115783
Merged-chr5-141056189-4	chr5	141055677	141056677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55581.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	6.66908896276199	6.87943519232225	6.4029338300369	6.90350742495251	7.24907662423358	6.48342861068052	0.39716692762304	0.211097556624329	0.603477171445767
Merged-chr17-44436740-4	chr17	44436242	44437242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248170.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	4.75992990825841	4.91322605912101	4.82477789133565	4.80031550202998	4.83795758639166	4.92660913012569	0.0382978508630573	0.92095377707715	0.982463724790289
Merged-chr2-153158604-4	chr2	153158189	153159189	+	624.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2612.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	2.44410054395718	2.59534693142589	2.70218798911445	2.72612585971785	2.51550606668088	3.00722208868094	0.959573391367903	0.23066901844241	0.626381219532661
Merged-chr11-83118251-2	chr11	83117751	83118751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011407, intron 1 of 1)	intron (NM_011407, intron 1 of 1)	1431.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	3.60953071042574	3.63228824216188	3.61764421600244	4.07853160640855	4.14498130752719	3.80174789821825	1.30284721909304	0.0149192409618075	0.132148201186936
Merged-chr15-84995284-4	chr15	84994768	84995768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7297.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	7.39427767037948	7.42703321851471	7.28459528756516	7.64902510502955	7.43636926917577	7.34193879285394	0.163971848689303	0.485664093602889	0.82753635220313
Merged-chr2-72852725-4	chr2	72852220	72853220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39003.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	5.45371351235163	5.28939674026203	4.7789196511336	5.6015722660791	5.46862297605229	5.43589214263257	0.554507970497338	0.154044598230447	0.523194535677336
Merged-chr1-106232019-3	chr1	106231523	106232523	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60154.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	7.12645393763546	7.3737778590405	7.05872573386761	6.98970874852527	7.03780711772706	6.76788537770192	-0.388256850072039	0.12950984605861	0.481383689397159
Merged-chr13-43400311-2	chr13	43399811	43400811	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023554, intron 3 of 7)	intron (NM_023554, intron 3 of 7)	1935.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	3.63244231328825	3.37429307649069	3.99615550410593	3.39811314698805	3.5054407024782	3.69607092865119	-0.517125024007311	0.398023026934627	0.774770052576157
Merged-chr2-165993794-4	chr2	165993275	165994275	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	1138.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.08635904694461	6.2832250529237	6.27185960651954	6.53806493408603	6.34190340229249	6.31196352419375	0.312452278251119	0.264201181982154	0.66211830463138
Merged-chr15-93276449-3	chr15	93275941	93276941	+	931.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	4.83006451306519	5.04486734592154	5.4299529678099	5.02990459116815	5.10105406190217	5.35329649315425	0.101981567899619	0.797762873834915	0.951807414581074
Merged-chr7-7210018-4	chr7	7209510	7210510	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145577)	promoter-TSS (NM_145577)	-12.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	3.98193484017698	3.99455403542576	4.24684071357958	3.85570944212966	4.06210214145074	3.94778109829114	-0.323766063150745	0.519809658966828	0.846048097455962
Merged-chr17-10318259-4	chr17	10317761	10318761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	CpG	1100.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	7.24070471301688	7.36954042164989	7.24224192311871	7.51541929044461	7.32930911037716	7.5042498705887	0.23760956047834	0.304988894358413	0.701230797737315
Merged-chr16-18247718-3	chr16	18247221	18248221	+	637.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011239, intron 1 of 5)	intron (NM_011239, intron 1 of 5)	973.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	5.38435692624165	5.88529016269751	5.43100989922375	5.56677770491586	5.86159081832449	5.61361944612917	0.178118624407429	0.61602668121612	0.888205650504781
Merged-chr13-37354095-2	chr13	37353595	37354595	+	784.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	8750.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.66911465882441	4.51935836774576	4.92979954899704	4.76467848572839	4.91353728462955	4.88913311868756	0.351855418368919	0.387983969848037	0.767920317866686
Merged-chr2-30066345-4	chr2	30065884	30066884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204875)	promoter-TSS (NM_001204875)	-90.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	6.60135027226385	6.43111026520015	6.67066223480556	6.65403107313385	6.45486739498524	6.51224132256405	-0.0391928205380052	0.883324258820636	0.973350526114359
Merged-chr2-6705774-4	chr2	6705252	6706252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	15910.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	7.59763917197744	7.72357206605154	7.34345917725364	7.66687830853012	7.99448143592614	7.5799518781877	0.286414323012757	0.258852653541792	0.656379293054102
Merged-chr19-5511338-3	chr19	5510818	5511818	+	869.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-801.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	7.40105803556476	7.39768466351416	7.02082320683191	7.44872061721451	7.68134708756139	7.22504387613648	0.265905179596682	0.314530350846265	0.708849744947754
Merged-chr1-166137702-4	chr1	166137207	166138207	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	7486.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.27496020201247	4.41479323638455	4.16043338555456	4.03621999867287	3.66635088113674	3.87883459052289	-1.26728536350915	0.0134188284106142	0.123267153277808
Merged-chr5-114379836-2	chr5	114379336	114380336	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054093)	promoter-TSS (NM_054093)	669.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	5.50951451416677	5.59709851741705	5.80434725590569	5.83268651580341	5.26613920487537	5.40239379912022	-0.211431912815436	0.557289378666413	0.86416203168235
Merged-chr4-135495698-4	chr4	135495202	135496202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030189)	promoter-TSS (NM_030189)	-285.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	5.36380962415543	5.27901768205634	5.22408080352147	5.57267539729793	6.04524474493051	5.42231819485687	0.817243728367742	0.0247705634214147	0.185987099906973
Merged-chr8-94810190-4	chr8	94809681	94810681	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011332)	promoter-TSS (NM_011332)	-272.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	3.79239025284608	3.4248587881715	3.63535626421849	3.79212785806317	3.83258187839191	4.09446725515994	0.914627352055509	0.103404432541996	0.428596564032599
Merged-chr6-83637319-4	chr6	83636783	83637783	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18833.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.79641659697895	8.28604709216312	7.83888836043411	7.79039717739181	8.18954624513965	7.69182223072655	-0.115937753782805	0.668213920596994	0.909010294561388
Merged-chr15-58595006-3	chr15	58594483	58595483	+	931.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179515.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	5.11977968400757	5.38360705894814	4.93162774564808	5.08993734515401	5.40765799183162	4.99839182432304	0.0431495563495733	0.91243779767738	0.980363124210176
Merged-chr9-7839599-2	chr9	7839099	7840099	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-2542.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	2.45276628345766	2.41682273630287	2.4107543979254	2.56749556207332	2.40322309665053	2.61209770521182	0.605907333575969	0.448114182050315	1
Merged-chr11-75657315-2	chr11	75656869	75657869	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080775, intron 1 of 31)	intron (NM_001080775, intron 1 of 31)	1354.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	3.4898588507025	3.02462955333667	3.44211939202042	3.46886381716148	3.40779063970484	3.34613807473469	0.289018332338382	0.654612423522688	0.903872559164033
Merged-chr4-53133624-4	chr4	53133124	53134124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	26271.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.38749695747052	7.37843792532907	7.48412146451839	7.25466786280412	7.42907656909399	7.22416874749446	-0.151760746706044	0.512161921459234	0.841747040388321
Merged-chr11-94401347-1	chr11	94400847	94401847	+	586.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8371.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.11975663904793	3.4224783376501	3.33232138863676	3.1606230868883	2.93336249586429	2.99804300494567	-1.19018069619888	0.0784464201326249	0.369913864933913
Merged-chr11-5505996-4	chr11	5505510	5506510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14631.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	7.08874557080191	6.96591056782403	6.99962993800178	7.19451060916878	7.38753597046109	7.04407698994104	0.310217899617621	0.20917058282993	0.600512916403162
Merged-chr18-50038539-4	chr18	50038047	50039047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	7563.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.84310567667305	4.67743442137912	5.22078603208671	4.3066973677458	4.37563534692902	4.30619772350864	-1.42473717631589	0.0015609204342902	0.0254818653122265
Merged-chr7-127511164-2	chr7	127510664	127511664	+	743.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	-819.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	3.50542674144835	3.44289224089014	3.9454203813692	3.39621316155159	3.43953005495704	3.47924131128698	-0.729349742083098	0.226896952589028	0.621890618706186
Merged-chr16-32124537-4	chr16	32124057	32125057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24755.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	6.59653527660919	6.5046357220106	6.50338672943673	6.33502360890223	6.55399569690993	6.52751366637074	-0.0965715774654563	0.716215768472004	0.926569584146506
Merged-chr15-84994059-3	chr15	84993519	84994519	+	752.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6048.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	5.01869356082304	4.99511383434571	5.40089012757919	5.16884896726687	5.2318028700937	5.25675955950823	0.167383002061003	0.650356936796475	0.902576889668442
Merged-chr7-100868737-4	chr7	100868240	100869240	+	905.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5327.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	4.95234272673413	4.80117416964423	5.382026109347	5.03223103678638	5.13648584796524	4.97276802099974	-0.00188337669102465	0.996241943164123	0.998961028701257
Merged-chr1-136144700-2	chr1	136144200	136145200	+	722.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153829, exon 2 of 36)	non-coding (NR_153829, exon 2 of 36)	13310.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	3.25883130194868	3.20320003745144	3.47063892252172	3.2007559785525	3.20996429764257	3.27161430991044	-0.339713848156297	0.584997923356675	0.87477799647552
Merged-chr4-19867764-4	chr4	19867275	19868275	+	855.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49048.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	3.97349038976725	4.20018343913703	3.72487989860347	3.98095085014529	4.1100295587825	4.24680140824585	0.354473332870403	0.499012107518319	0.834177355483594
Merged-chr6-54058941-4	chr6	54058460	54059460	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	19028.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.17383479740075	4.22685168003525	4.16123173314744	4.04663814321104	3.99599427535143	4.22902614258675	-0.293669404054867	0.535815986830355	0.853668337370661
Merged-chr19-4287139-1	chr19	4286639	4287639	+	541.0	f1_c57bl6.idr	exon (NM_130863, exon 22 of 22)	exon (NM_130863, exon 22 of 22)	-4002.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	3.27012246090569	2.92494157181584	3.64723114052221	3.30619456979382	3.00287235111543	3.31124234937357	-0.387953902498732	0.58582113767305	0.875131338300747
Merged-chr7-16071985-2	chr7	16071485	16072485	+	619.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347559, exon 1 of 14)	exon (NM_001347559, exon 1 of 14)	140.0	NM_001099277	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	3.44706595243956	3.33074542684552	3.59497029235451	3.40775936840069	3.36383067683251	3.80865564973865	0.278124790958685	0.646564977468658	0.90100465546023
Merged-chr16-33931716-2	chr16	33931216	33932216	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	ORR1F|LTR|ERVL-MaLR	35322.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.84612004538618	5.82332458548044	6.19596002448951	5.75186634611299	5.81788091223747	6.05329216365991	-0.144340994873738	0.649488296982361	0.902169249503915
Merged-chr12-69361497-4	chr12	69360986	69361986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4310.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	7.1397864429268	7.38997929702937	7.29447444086377	7.32627381897861	7.70926820276981	7.44960354619562	0.342316678852646	0.168537663267748	0.545164589147318
Merged-chr17-33684826-4	chr17	33684341	33685341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145486)	TTS (NM_145486)	617.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	8.80657146310971	9.4371721129997	8.56904453296688	8.78918817643819	9.10729298576161	8.75577816286119	-0.14075100561531	0.621256478541146	0.890625390716465
Merged-chr16-97478836-4	chr16	97478347	97479347	+	969.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 3 of 7)	intron (NM_020622, intron 3 of 7)	-15941.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	4.41792515095603	4.42136732373018	4.66675130389641	4.8016173561813	5.12390359345447	4.84842864817217	1.03799794294091	0.0123145794260039	0.116320981368933
Merged-chr15-74922466-4	chr15	74921970	74922970	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32581.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.04764313852248	6.37545282351291	6.31750251233312	7.69491341049893	8.12143313805547	7.48532645752882	2.35844825070945	2.84942245030269e-16	1.00039976052652e-13
Merged-chr1-51931511-3	chr1	51931037	51932037	+	769.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15559.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.6400570641202	4.52831807963148	4.87688611194752	4.60573386169861	4.5643708877001	4.94081026056556	0.0546138693543395	0.898154741266885	0.976261391798139
Merged-chr16-24361011-3	chr16	24360455	24361455	+	767.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32395.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.15736953766393	3.07703178213922	2.95962891069118	3.31852533108965	3.32029000509415	3.44470984979322	1.20807528121755	0.0632532069127414	0.327535804393266
Merged-chr3-135212480-4	chr3	135211950	135212950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-113.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	6.60206027777003	6.55286609796847	6.27341555956994	6.53152023348598	6.4633244056835	6.57845407926833	0.0438723340828432	0.871812084319034	0.970261003150518
Merged-chr15-81804881-1	chr15	81804381	81805381	+	577.0	f0_balb.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	2208.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	4.75217371052871	4.94342067064138	5.09821628860152	4.75211053990965	4.8284773350148	5.03137754525342	-0.137562388915984	0.72775438342859	0.930212706017483
Merged-chr4-128983081-2	chr4	128982581	128983581	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10143.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	7.05671667663739	6.8133629064446	6.92471538986974	7.06122545862189	7.0993338858233	6.95470970275512	0.165276484129796	0.502599191215995	0.836562439638842
Merged-chr2-6450899-4	chr2	6450413	6451413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98177.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.26405273690098	4.99152744706696	4.96411039149209	5.2005417067736	5.0647110309222	4.99271390220588	0.00994105358441034	0.978826451892484	0.995160277495735
Merged-chr8-104349518-2	chr8	104349018	104350018	+	563.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153582, exon 4 of 4)	3' UTR (NM_153582, exon 4 of 4)	8924.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	2.45634630877946	2.38252695467265	2.84075733875687	2.32459111131915	2.27398936267606	2.62485097656297	-0.944527708375439	0.277473400095188	1
Merged-chr14-69251684-3	chr14	69251238	69252238	+	789.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026331, intron 1 of 3)	B1F1|SINE|Alu	33365.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	4.19103399102451	4.1212194419662	4.44391286844362	3.60261884606675	3.56307865020505	3.85409507890374	-1.84511900972322	0.000640691634430811	0.0127751424677016
Merged-chr9-44880808-2	chr9	44880308	44881308	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081049, intron 1 of 35)	intron (NM_001081049, intron 1 of 35)	466.0	NM_001357549	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	5.09486807507369	5.02032640922908	5.32808635060826	5.39744740452419	5.00093652485046	5.36142525736062	0.228031960750516	0.544717722171092	0.857894224757806
Merged-chr2-121007967-2	chr2	121007467	121008467	+	577.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-441.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	2.80136097284941	2.94591013574397	2.88547275505689	3.00341957063877	2.93534238677538	3.18750427470061	0.771689995925304	0.264570984678238	0.66250631957347
Merged-chr7-67459573-1	chr7	67459073	67460073	+	626.0	f1_c57bl6.idr	Intergenic	Intergenic	-86715.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.45991790586131	7.48006613380469	7.3330757769566	7.20546700767207	7.39240110923066	7.33447261611173	-0.169792902945833	0.461481326605621	0.814992635038861
Merged-chr19-37436642-4	chr19	37436124	37437124	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1783.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	5.60316663326701	6.03106550854112	6.13905923174373	5.86530368403122	5.78502526499416	5.8185348239405	-0.2043575109954	0.531363661294313	0.851573719741472
Merged-chr17-5727115-2	chr17	5726615	5727615	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-71542.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.11804258570821	2.84438268857118	2.7721573619613	2.99829113131328	2.70635843218981	2.97263338969479	-0.134472462046607	0.855535860877921	0.966242264237245
Merged-chr11-94410078-3	chr11	94409575	94410575	+	749.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009783, intron 35 of 35)	intron (NM_009783, intron 35 of 35)	-17099.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.31763539547195	2.93225878341577	3.17662775022317	3.02576493002445	3.06232325698909	3.0732894463912	-0.43181564562545	0.522209540025362	0.84749685799829
Merged-chr7-29769904-4	chr7	29769386	29770386	+	990.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023750, intron 1 of 4)	intron (NM_023750, intron 1 of 4)	1334.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	4.81286178605362	4.72479805103091	4.42058818914577	4.38846534906277	4.50384318778938	4.30039489091734	-0.651717700411938	0.141291392401143	0.502077389631641
Merged-chr1-82795832-2	chr1	82795332	82796332	+	874.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-27376.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	5.77098368221102	5.51147399843129	5.56368624852506	5.58877943129783	5.52802430317695	5.59822123555793	-0.101053296147698	0.754964549646925	0.939180610396804
Merged-chr13-8871789-3	chr13	8871294	8872294	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-58.0	NM_001039388	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.64935332937603	5.99082906574549	6.25887823782139	5.66994576661472	5.85620400032124	5.92776174342052	-0.282209536338886	0.399249231427608	0.775732166926525
Merged-chr17-70968371-4	chr17	70967857	70968857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22159.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	8.51041640418635	8.25357569298153	7.73700101018893	8.60913627230096	8.67477915838846	8.03517868766748	0.365403883690731	0.218023076243851	0.612156710919465
Merged-chr12-111309399-3	chr12	111308865	111309865	+	939.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 21 of 36)	intron (NM_183016, intron 21 of 36)	38269.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	3.12021721391462	2.95844893432335	3.0491115072267	3.00230396886444	3.06533870299241	2.87569611468492	-0.25537468629585	0.707540500260805	0.923436131070566
Merged-chr15-6587024-4	chr15	6586514	6587514	+	897.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	7167.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.46933918481085	5.5692985868865	5.55155911814707	5.73794015778354	5.57829335757019	5.84633224083395	0.346763083257005	0.280412857591034	0.678312490680701
Merged-chr9-116143731-1	chr9	116143231	116144231	+	729.0	f1_balb.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	31632.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.1603755042772	4.28693908246241	4.07774373965491	3.60342302044731	3.52501226581153	3.68723995892263	-1.9068631466901	0.000390578747853756	0.00863423922726232
Merged-chr11-118242854-4	chr11	118242337	118243337	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	5755.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.4132157269902	5.55467654276191	5.17264696807969	5.3769457753689	5.3688343266409	5.43171114584533	-0.0220896509974448	0.949100690857833	0.988169196639905
Merged-chr10-127313025-4	chr10	127312528	127313528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1242.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	6.67590637687832	6.35929386742831	6.69100571489463	6.92015656854087	7.1595429617493	6.78147849344409	0.613066047953408	0.0258064733691197	0.190482128634588
Merged-chr11-80147885-2	chr11	80147385	80148385	+	877.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5732.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	5.45475549920981	5.67789273713529	5.84966555381728	5.79396225019593	6.2147075384368	6.15278939324326	0.722286935770518	0.0276790817192154	0.198544916525213
Merged-chr5-132426073-3	chr5	132425570	132426570	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177047, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	116273.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	3.86023344962939	3.94176664737188	3.58294966163823	3.05315780420557	2.95599879457791	3.04078705511807	-3.74983868316677	2.15605514915853e-06	0.000106659356035186
Merged-chr6-39538430-4	chr6	39537937	39538937	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	19397.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	3.01706214696563	3.01377388903121	2.96767953632539	2.74069309920306	2.94631250809929	2.79248884786626	-0.805830017534495	0.259318164873165	0.656900978680461
Merged-chr15-75086839-4	chr15	75086365	75087365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25072.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	8.94426552823535	9.44110903917107	9.33603835127953	8.49347994904118	8.50914620997214	9.16713285965116	-0.676458874557585	0.014560808771738	0.129947651113937
Merged-chr13-59003443-4	chr13	59002949	59003949	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195752.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	7.60347466117697	7.8062097554637	7.57822849728793	7.7157572489592	7.98767752060331	7.33266583847633	0.0698641932270026	0.792295089180174	0.949929758256028
Merged-chr19-3908087-4	chr19	3907602	3908602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136091)	promoter-TSS (NM_001136091)	-969.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	8.37615183751099	8.39010366733737	7.92221847450578	8.31616607943812	8.60919162726271	8.02603983491944	0.130297748285387	0.621727380759844	0.8908398051148
Merged-chr9-120926407-3	chr9	120925908	120926908	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	4394.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	4.42509836359638	4.37010801938204	4.35113118774801	4.14384599540393	4.35322110077358	4.08878150108651	-0.4605811965372	0.319868755042853	0.713764238560291
Merged-chr2-91132880-2	chr2	91132380	91133380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008653, exon 24 of 32)	exon (NM_008653, exon 24 of 32)	14736.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	3.37711853906811	3.36773151147806	3.63306954340202	3.34695744655793	3.11703041302624	3.27788770545099	-0.842327083062043	0.176117093213636	0.556291656595492
Merged-chr5-21050491-2	chr5	21049991	21050991	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	L2|LINE|L2	5420.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	2.94511147390504	3.11842076589314	3.05220832257265	3.08756156518426	2.8192483463895	3.06579379995169	-0.226898424867958	0.740680564387028	0.93463169199005
Merged-chr8-111527389-2	chr8	111526889	111527889	+	830.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5282.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	3.38649113955785	3.39901092197156	3.39063779526694	4.12846248481553	3.88547896369048	3.90627106918616	2.05062652759547	0.000356001832761682	0.00801900392540175
Merged-chr5-138158057-4	chr5	138157565	138158565	+	826.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	3.56189124169939	3.29860807055882	3.52142143908186	3.59757575116057	3.26270609066811	3.97585061183925	0.609152783365826	0.338644798113022	0.728588578553954
Merged-chr10-95507494-2	chr10	95506994	95507994	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5545.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	5.01749856293966	4.8212780905601	4.99764659104031	5.11303993658645	4.81521373876889	4.95580187061155	0.0384218385332604	0.920569077045158	0.98245041828945
Merged-chr15-101268728-2	chr15	101268184	101269184	+	964.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1838.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	2.24285350324779	2.17856557740476	2.35232026767951	2.5614664993126	2.45864599387858	2.68068358931279	2.11842494875479	0.0161455711972061	1
Merged-chr15-96593291-4	chr15	96592850	96593850	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	48612.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.05587224208135	4.64859996368887	4.52556331687725	5.27479051582833	5.26159361500762	5.21807617272122	1.01392985057183	0.0129397072615814	0.120542673737311
Merged-chr5-53997084-4	chr5	53996580	53997580	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.43476195880245	3.67513671357276	3.64064258979341	3.96549053363805	3.73164327750521	3.7118681744173	0.74671237797139	0.179554011930751	0.56110368604883
Merged-chr3-8991046-4	chr3	8990539	8991539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13165.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.18884694042316	5.88263961657822	5.91431134059046	6.50341370230314	6.36375981144091	6.42365269429605	0.706176533777253	0.0147603753372394	0.131185014714534
Merged-chr1-191179409-2	chr1	191178909	191179909	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3924.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	4.8925711119486	4.63473820998724	4.17031020535684	4.51166963556141	4.18936714739309	4.24222653524628	-0.719038391344472	0.145828968277702	0.509223056367729
Merged-chr14-54579844-3	chr14	54579331	54580331	+	840.505554	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2170.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	3.98273634917971	4.28994199082699	4.4664416805262	4.83517562682436	4.98532159744778	5.05139297309163	1.72862504674608	0.000110063808121988	0.00307528184896385
Merged-chr7-141395028-4	chr7	141394528	141395528	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	2868.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	5.47242203292447	5.37991943498737	5.61166331009002	5.10805799049451	5.23893945493745	5.45719330585717	-0.426528049906686	0.221114125865355	0.615621501204726
Merged-chr6-113695929-4	chr6	113695431	113696431	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172161)	TTS (NM_172161)	-1119.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	6.53564304479658	6.29169364025408	6.28028501959415	6.60200405547877	6.77812932331274	6.32005343975247	0.344292173060283	0.233537668809532	0.629836294896575
Merged-chr5-105844414-3	chr5	105843969	105844969	+	588.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32099.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.13762868558626	3.0812514996251	3.12322269787737	2.93180424454368	3.10340967773493	2.82496468144451	-0.669792549589455	0.33628857361555	0.726311051846196
Merged-chr18-61090852-4	chr18	61090366	61091366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14706.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.54962249048642	5.38353230502881	5.32118641348861	5.72729819754978	5.70375945065944	5.92594668513528	0.660542921893576	0.0434365885823891	0.261876315798375
Merged-chr2-131505910-4	chr2	131505405	131506405	+	879.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	14043.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	3.68596816109765	3.45169656920808	3.44398790412899	3.49992555279191	3.44522276115918	3.51553660136673	-0.18592331559624	0.74801791791932	0.936880860325556
Merged-chr6-51016647-2	chr6	51016139	51017139	+	560.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	240524.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	2.25642495604282	2.11358148514282	2.3090338831444	2.36313030007351	2.15182295249455	2.51043456737847	0.796578487823787	0.365978772698287	1
Merged-chr8-111945098-2	chr8	111944594	111945594	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026693, intron 3 of 3)	intron (NM_026693, intron 3 of 3)	4391.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	3.28633732643769	3.35999586651141	3.50321338009559	3.31263475007365	2.96564401558627	3.416382462117	-0.579208895953147	0.377062261623089	0.759601894856042
Merged-chr5-113632114-2	chr5	113631614	113632614	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	11489.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.86822907073108	4.35391904539493	4.8121155397869	4.74519001472837	4.78849287935275	4.64467956072462	0.0862742230174242	0.842709322836541	0.963161613177542
Merged-chr12-41275021-3	chr12	41274516	41275516	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	211041.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.84612256087168	3.6373025320436	3.38901811469183	3.45494621368571	3.85579193237991	3.84611081720831	0.296888333034457	0.623938182417091	0.891747509963437
Merged-chr11-102407091-1	chr11	102406591	102407591	+	1000.0	f0_balb.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	426.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	7.45102668497689	7.08213178179983	6.98147736300672	7.35084802689711	7.21339093889762	6.98254440171624	0.00196697411077362	0.99419022330117	0.998918571480046
Merged-chr11-3963838-7	chr11	3963276	3964276	+	984.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022889)	promoter-TSS (NM_022889)	-199.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	7.8082014226283	7.72672264865357	7.54618979958919	7.70232156921541	7.76070850208441	7.42410358663468	-0.0843110066235021	0.721849562620085	0.928606209603791
Merged-chr17-5601490-2	chr17	5600990	5601990	+	644.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	108890.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.22550705671805	5.25191438851989	4.87276595799694	4.41049972412748	4.25266786411026	4.78694776854193	-1.50143615935937	0.000558363223550359	0.0114575307287739
Merged-chr16-35768545-4	chr16	35768018	35769018	+	981.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	838.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	7.96763820698056	8.19936575370137	7.84020359032042	7.59771175357438	7.90904509151494	7.49378584088523	-0.46832600154041	0.0593222018170538	0.315452070107231
Merged-chr5-62830069-2	chr5	62829569	62830569	+	763.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 4 of 8)	intron (NM_001170705, intron 4 of 8)	16246.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.75991991539695	3.62070367081425	3.661031204747	3.5065691352028	3.33619125432442	3.21288021261693	-1.18954457810888	0.0486483873844882	0.279998271943591
Merged-chr11-55132158-2	chr11	55131658	55132658	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 7 of 10)	L1MB4|LINE|L1	19548.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	3.16955911964262	3.0602144792048	3.13371163518735	3.26065236864802	3.23972086492654	3.26389775038484	0.564591261099683	0.368725847096826	0.753594740654151
Merged-chr17-47510021-2	chr17	47509521	47510521	+	832.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4970.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.48550768131334	4.16928702252299	4.61923294846234	4.519378046363	4.35449200923881	4.56822727863739	0.122936428251975	0.787004322248572	0.948693859994902
Merged-chr2-58167859-4	chr2	58167364	58168364	+	878.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	3890.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	2.93701173717332	2.92182218978923	3.04449117505645	2.90622092578871	2.99294514262331	3.2271792835308	0.358489026493879	0.59775479887745	0.88045850321281
Merged-chr2-120446603-3	chr2	120446100	120447100	+	956.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 17 of 23)	intron (NM_172672, intron 17 of 23)	-16993.0	NM_001177799	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	4.69706768722118	4.67336197996505	4.25286543699945	4.5110188352751	4.3574208093608	4.41757380225101	-0.348618016615591	0.439288279071983	0.801067055524026
Merged-chr6-47450221-2	chr6	47449789	47450789	+	668.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3443.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	3.32017928139257	3.20736194617807	3.11150655842791	3.33757628486056	3.03712360119818	3.41333151659171	0.193847922692222	0.766469193100374	0.942467872936068
Merged-chr2-145823007-4	chr2	145822529	145823529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	36913.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	8.49757575479495	8.63911036794054	8.22958603771772	8.39476633621117	8.87272443276697	8.29164505538086	0.114297646118261	0.658215244438812	0.904954876146539
Merged-chr11-50240532-5	chr11	50240055	50241055	+	950.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2023.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	4.02034220852845	3.87383999563269	4.14453973905858	4.19205522228649	4.15671678162761	4.3002138349519	0.582877630592608	0.225592933341583	0.620615512711977
Merged-chr18-23895797-2	chr18	23895297	23896297	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-58891.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.17628034409454	6.47658889355017	6.5466632013841	6.44369449751912	6.4807704342762	6.53803937443445	0.133819299686035	0.630280413453608	0.894683393050929
Merged-chr18-32709065-2	chr18	32708565	32709565	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-106318.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	3.80286577425606	4.13685694723626	4.23281851610682	4.06385210778589	4.23426726547616	4.2120267300782	0.307963360081114	0.537361267698391	0.854421974788323
Merged-chr1-172512422-2	chr1	172511925	172512925	+	969.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8705.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.08103302338809	3.69093827321417	3.84834947475156	4.42809680978946	4.49246399552886	4.2728378668773	1.47178857519745	0.00366654446359764	0.048798117678668
Merged-chr7-19094017-4	chr7	19093504	19094504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011383)	promoter-TSS (NM_011383)	-540.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	6.13184894240953	6.25430626431412	6.44747083123082	6.18610560570969	6.43284373694421	6.50664690813737	0.171783592480884	0.550223911944942	0.860631826326949
Merged-chr3-105775884-3	chr3	105775346	105776346	+	698.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	25535.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.20335900196556	3.89383113264461	4.14752308411911	4.43175724640725	4.32206964569398	4.11997185154943	0.599545188573405	0.216134456728957	0.609553034390023
Merged-chr1-125430976-3	chr1	125430482	125431482	+	931.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	B1F1|SINE|Alu	4745.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.72940851607574	5.53618066530517	5.77341939192096	5.99576623099346	6.40059506631595	6.37083451223228	1.03052153551765	0.000982169508124967	0.0177661653113179
Merged-chr10-70199212-2	chr10	70198712	70199712	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-5452.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	4.58576577771529	4.83358101963079	4.8554069341953	4.85897836994209	4.73625555499733	4.77084170033822	0.0654355329272404	0.870180002038084	0.970047222818467
Merged-chr16-35938947-4	chr16	35938456	35939456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	71.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	7.90323589396279	8.02348013719115	7.60977426332064	8.06776948571679	8.31392896050745	7.92443892511649	0.360616130293751	0.140724680719681	0.501224799347477
Merged-chr1-92181867-2	chr1	92181367	92182367	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	3.1031528778142	2.81023099493379	3.17016087116026	2.92064203835544	3.11784252486009	3.01117002884394	-0.0521725391815672	0.940433224393074	0.98684811092327
Merged-chr17-71292120-3	chr17	71291642	71292642	+	973.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	18869.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.84173709243593	3.99493139354565	4.17724367581488	3.66735307246115	3.49347306194213	3.61990527571288	-1.37303455612229	0.0125372155698084	0.117862008036676
Merged-chr6-31285428-4	chr6	31284889	31285889	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	L2c|LINE|L2	65038.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	5.53522529459338	5.95070381858142	5.53724521597301	5.28312992946597	5.34467550325797	5.599947597999	-0.547809172067985	0.119188132935522	0.461591239342801
Merged-chr14-16379518-4	chr14	16379016	16380016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	L1M4|LINE|L1	14310.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	4.39657563283286	4.35454389691085	4.74672058436135	4.80490302219202	4.3444998777702	4.91549388474584	0.481455992846003	0.299573855362511	0.696314831841331
Merged-chr13-63643663-2	chr13	63643163	63644163	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70203.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	2.96066437798605	3.39389313242208	3.16335791262598	3.25120768144015	3.13037781920705	3.45683861266485	0.377855643410331	0.57454464469175	0.870773088875341
Merged-chr10-4174956-3	chr10	4174445	4175445	+	896.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38175.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	2.63552118307806	2.5269722686967	2.79261211923931	2.34184183118796	2.2602609656095	2.43598590397663	-2.05815505467714	0.0183799189713826	1
Merged-chr10-70199980-4	chr10	70199482	70200482	+	887.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-4682.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	5.15218013910291	5.440496964406	5.13470998526509	5.43738350586489	5.37601300674439	5.36428525079899	0.265848744997296	0.449164254840806	0.807594795348397
Merged-chr17-25320833-4	chr17	25320342	25321342	+	911.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053260, intron 3 of 5)	intron (NM_053260, intron 3 of 5)	2188.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	4.10406498113392	4.01718328756039	3.92603641010277	3.54615506160592	3.44648135028224	3.79563033233534	-1.43109173822698	0.00946114490861782	0.0967231700122773
Merged-chr19-47890924-5	chr19	47890416	47891416	+	887.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25122.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	6.00837402728669	6.03611503062583	6.06153067985787	6.53511300858359	6.62959792892973	6.33528070552369	0.798355764233412	0.0041360178455687	0.0532492299077952
Merged-chr1-175691884-1	chr1	175691384	175692384	+	846.3333130000001	f0_balb.idr	intron (NM_010098, intron 1 of 3)	intron (NM_010098, intron 1 of 3)	748.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	4.49816540091137	4.36915589016725	4.7069915595827	4.25705841544314	3.95011325043258	4.10280584205362	-1.13012958938049	0.0174693581512221	0.147557644203318
Merged-chr13-5845836-4	chr13	5845331	5846331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12261.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.05599801306896	8.71644962886807	7.8923586601756	8.13059143613336	8.49716674981129	8.09621489067076	-0.0332675610213752	0.91011877339088	0.979782681765082
Merged-chr10-7064310-4	chr10	7063815	7064815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41130.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	5.66955509173295	5.42875801868959	5.23783026471002	5.0425885362348	5.06408992412513	4.77005830611853	-0.994174169595046	0.00896607185509319	0.0933144348866284
Merged-chr2-61578583-4	chr2	61578089	61579089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	3.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	8.22795965913875	8.4311190537265	7.9445670230814	8.31116148816643	8.84595119073435	8.00047483814668	0.310859881686856	0.286000165553289	0.68342985932029
Merged-chr2-30772963-7	chr2	30772463	30773463	+	945.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28774.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.59846952004478	4.91417935458857	5.63681668684763	4.96202873394737	4.81952301289644	4.9516237213687	-1.04991851322655	0.0114195917846424	0.110424201741438
Merged-chr4-34960301-1	chr4	34959801	34960801	+	602.0	f0_balb.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48820.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	3.21381959352461	3.12666851937158	3.36432087539525	2.90000034407932	2.83345829271281	3.33017541340412	-0.891114469823756	0.208565034329874	0.599519099613781
Merged-chr14-66266342-3	chr14	66265791	66266791	+	868.2222289999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	14761.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.52769095549147	4.33408836478178	4.34604351646519	4.75679488817217	4.71527652294637	5.12491340320025	1.09386601461482	0.0118838263906581	0.113462929009051
Merged-chr5-90930771-3	chr5	90930272	90931272	+	582.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	-424.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	4.56869763727273	4.46996289483522	4.1949461206679	4.04273830677117	4.00497745698372	3.8452659908838	-1.27248307110102	0.0100433563987588	0.100685252919027
Merged-chr16-62814023-3	chr16	62813510	62814510	+	900.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026588)	promoter-TSS (NM_026588)	-666.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	2.93915387568692	2.98093092550646	2.98542485724503	2.90895469558801	3.10392987391667	3.11538056479725	0.36245125374226	0.589401499187634	0.87684682813475
Merged-chr14-47360631-1	chr14	47360131	47361131	+	858.0	f0_balb.idr	Intergenic	Intergenic	-13229.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.32705566504048	6.6809985799143	6.59411471520592	6.75724688369374	6.97108676643672	7.04534410061794	0.605271976274723	0.0258277649130946	0.190554422498663
Merged-chr4-103321905-5	chr4	103321308	103322308	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025909, exon 3 of 9)	exon (NM_025909, exon 3 of 9)	7962.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	6.44510209325901	6.71682180126786	6.46771678693473	6.34292849743511	6.38662041761594	6.39729001759594	-0.290139928200742	0.285236365293502	0.68281445045432
Merged-chr6-115852448-2	chr6	115851948	115852948	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010774, intron 1 of 7)	intron (NM_010774, intron 1 of 7)	893.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	6.19505802695571	6.31262453981564	6.56337372528364	6.29878967516972	6.77401927863312	6.52082453084558	0.317496345868331	0.285700794550687	0.683159713574733
Merged-chr14-9468847-4	chr14	9468353	9469353	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-415242.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.27593824692865	4.12784667539049	4.25079172375767	4.3799135178822	3.94608855341643	4.63975780273103	0.330828433030248	0.513210612738999	0.842416687973146
Merged-chr17-34301028-1	chr17	34300528	34301528	+	642.0	f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.69316740629941	3.92627285483392	3.55672651689415	3.52823146096357	3.70443252297414	3.51393615229298	-0.510503462718333	0.374510147512702	0.758106266771134
Merged-chr6-72109714-4	chr6	72109218	72110218	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12110.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.81339010063641	6.14935714803956	6.17270473204302	6.35878969943003	6.40647967740858	6.12572770221679	0.437378752131011	0.144675443858069	0.507498892892878
Merged-chr15-89400849-3	chr15	89400333	89401333	+	887.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	MTE-int|LTR|ERVL-MaLR	9430.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	4.21167243200687	4.65589342446267	4.42270626901164	4.24056976406901	4.01521011779965	4.82475374382906	-0.116247908133978	0.824671379110039	0.958596193929081
Merged-chr11-115603894-4	chr11	115603396	115604396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025305)	promoter-TSS (NM_025305)	20.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	7.32448205586895	7.21829473857211	7.16691608394533	7.25985385326374	6.90050068814002	6.85450298452458	-0.331129452639525	0.196838627132285	0.584754678471847
Merged-chr5-134640154-2	chr5	134639654	134640654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-745.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	5.58349450712586	5.68369481822123	5.90055795205584	5.2125749934298	5.447531479163	5.42050637236726	-0.671445368708035	0.0469596271275754	0.274334266827086
Merged-chr11-114891956-2	chr11	114891456	114892456	+	673.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359812, intron 2 of 7)	B4|SINE|B4	1915.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.20674570690258	7.41040454999569	7.2613462125591	7.35298515754201	7.51677063518891	7.18562577875428	0.102973471085674	0.67145734095609	0.910528012497292
Merged-chr3-79629506-2	chr3	79628996	79629996	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_025794)	promoter-TSS (NM_025794)	417.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	5.85257264428531	5.85458303024798	5.7176672883525	5.75048851989541	5.62279732259324	5.32815333744526	-0.410831480094271	0.209904801964951	0.601810997240013
Merged-chr9-90040515-4	chr9	90040013	90041013	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13754.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.96228549290224	4.84327040395243	4.66694452755526	4.58977386733638	4.60623623084645	4.60894293358649	-0.550989712677751	0.174424282185334	0.553678509865295
Merged-chr4-117188867-1	chr4	117188367	117189367	+	580.0	f0_c57.idr	Intergenic	Intergenic	-6243.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	4.70576025846243	4.47951450698967	5.03713051589685	4.69094908557582	4.76041820973423	4.79204748647985	-0.000681095161116481	0.998721926209759	0.999767255399497
Merged-chr17-71132266-2	chr17	71131765	71132765	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-51267.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.84302279399057	3.87795723634371	4.05483876912381	3.85394915031543	3.61884537695882	3.56299179384301	-0.767305880474225	0.158140474080142	0.529823190004248
Merged-chr3-95229994-4	chr3	95229528	95230528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1085.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	7.63812302962017	7.67188971458704	7.63482923944181	7.92918660614929	7.96565327429474	7.86442709887184	0.394190663189034	0.0631257956792616	0.327059228323786
Merged-chr4-145245451-2	chr4	145244951	145245951	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	1419.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.19207826542335	6.5140495381939	6.83609980755919	6.70930483808708	6.74362437987701	7.0625125361144	0.490675722362958	0.104896541561708	0.432154846277496
Merged-chr13-60605025-2	chr13	60604525	60605525	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	B2_Mm2|SINE|B2	2814.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.10026237736032	5.34815102901393	5.82353688776729	5.31577257093285	5.32804008511533	5.40143081998169	-0.193437313012636	0.612423700339225	0.886724591491511
Merged-chr12-12265212-3	chr12	12264686	12265686	+	898.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	3047.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.91139785802846	6.08504757995751	5.97580695132658	6.41757949863598	6.32044731140228	6.06087732178691	0.488010140702565	0.0963297258049606	0.413764290015164
Merged-chr16-4791137-2	chr16	4790637	4791637	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358082)	promoter-TSS (NM_001358082)	-845.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	5.07702977738109	4.91602212776135	4.54903859276433	4.74823203432562	4.9212945785836	4.57267856554552	-0.249839373730894	0.561454518190157	0.865407801976397
Merged-chr8-88274290-3	chr8	88273798	88274798	+	871.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	1895.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.15665074571963	4.07827127253261	4.34610473732623	4.22856425466044	4.31206241445756	4.19145765016683	0.163149820084922	0.726057931162228	0.929743505822386
Merged-chr13-48961873-2	chr13	48961373	48962373	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5955.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	7.16471405544807	7.1664755335428	7.29359739904683	7.20620893949879	7.231521737711	7.08626088217071	-0.0375307426884365	0.87264047064802	0.970261003150518
Merged-chr16-38346085-2	chr16	38345585	38346585	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-914.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	4.40704275371182	4.00914036517909	3.87838741954332	4.28319693057336	4.60808144620728	4.35423351477989	0.798066265232911	0.11851700861314	0.459921210483695
Merged-chr10-122570055-4	chr10	122569601	122570601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-210.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	7.42905681494937	7.31874941175704	7.03890639496284	7.6481618242336	7.83853306035585	7.44090927544553	0.555301643024229	0.0291940307531461	0.205253646887011
Merged-chr10-82900307-4	chr10	82899799	82900799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33673.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	5.49222559396954	5.33385449410344	5.26332101330045	6.40385317721085	6.56468955661567	6.07195108928659	1.76768790005912	5.83185577817506e-08	4.41544181610911e-06
Merged-chr13-104178381-4	chr13	104177870	104178870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	96.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	5.5314902244765	5.88651293355088	5.88517960193579	6.24911718362894	6.09620585666001	5.9467540210255	0.582976917928618	0.0643386327905618	0.330584720096151
Merged-chr13-113617433-4	chr13	113616924	113617924	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	1140.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.23900327446258	8.52506816998003	8.56097843897614	8.25067437955456	8.55146320311674	8.40820352160465	-0.0502918580304143	0.823167370700412	0.958214218900685
Merged-chr5-136085016-4	chr5	136084515	136085515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1099.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	8.36204804232864	8.06627806650935	7.77668854364087	8.51355791569361	8.31239028399872	7.96887047387571	0.269047933475909	0.314962655556022	0.709312911700361
Merged-chr9-65555260-2	chr9	65554760	65555760	+	954.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	24827.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.42194504868421	3.78136742671078	4.46410886073632	4.05199786755029	3.77862769488999	4.41306762358397	-0.42190981036123	0.459457824716944	0.813658678735102
Merged-chr17-56958051-4	chr17	56957571	56958571	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175731, intron 4 of 5)	intron (NM_175731, intron 4 of 5)	-22683.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	2.83142319135372	2.64492445091962	2.8636170616991	2.56073658111391	2.41903094772714	3.36134306476999	0.356660223041224	0.688907389348491	0.917235946766438
Merged-chr8-69749699-4	chr8	69749193	69750193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001200023, intron 1 of 3)	CpG	269.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	7.70480972100185	7.92748135731577	7.61676543486614	7.85649379600198	7.9276149704515	7.69219535901311	0.103512819503607	0.653849899578945	0.903558174250044
Merged-chr5-101963735-2	chr5	101963235	101964235	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	106186.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.55680653004738	3.66152038168032	3.81061845711863	3.84002312873462	3.84476629796294	3.97545481381074	0.68881515313495	0.194423159369057	0.581717448571753
Merged-chr18-75370591-2	chr18	75370091	75371091	+	990.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	3226.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	5.16072271730141	5.17323036444284	5.41956551644837	5.64881233537587	5.42894225067818	5.39309360473618	0.49166575915718	0.155890127445548	0.525963252148615
Merged-chr16-90397595-2	chr16	90397095	90398095	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	11198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.78252267198653	3.54993342371445	3.79959280265878	3.41990748794463	3.10317799068973	3.39888524183411	-1.54268216149223	0.0131734099943336	0.12188208919461
Merged-chr11-69118895-4	chr11	69118410	69119410	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1543.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	4.43003095578838	4.37761521199795	4.39861106232946	4.15590187378505	4.5566786818812	4.24012023382501	-0.155337346339858	0.737814560013125	0.933858424870961
Merged-chr3-121570879-4	chr3	121570340	121571340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38496.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	5.27117618833129	5.07373643649913	5.26875706878783	5.5546655209331	5.66569968330042	5.42679476195883	0.699151938901481	0.0407572727751964	0.251802227418678
Merged-chr1-138458297-4	chr1	138457776	138458776	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161481.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.56977246523601	3.40115620677224	3.52818675165882	3.55117351340158	3.14249201316078	3.6502362780516	-0.151600881446734	0.808283417157875	0.954683711776353
Merged-chr7-101851919-4	chr7	101851413	101852413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	5277.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	6.0386859742528	6.30536358570068	6.20691530388519	6.33512349493555	6.52738422479853	6.66079874999311	0.529337902185534	0.0630364633428161	0.32667775547017
Merged-chr8-105408512-2	chr8	105408012	105409012	+	851.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_177791, exon 2 of 17)	exon (NM_177791, exon 2 of 17)	4990.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	4.43913023914724	4.42301225646791	4.29751608571973	4.6186072918991	4.34577587278911	4.31967778759935	0.111944689928777	0.80197081845243	0.95311424823661
Merged-chr13-20493888-2	chr13	20493381	20494381	+	624.0	f0_balb.idr|f0_c57.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	20891.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.82424817320135	3.90824511587487	3.9556547466378	3.66220992555218	3.71314552089967	4.02351509985094	-0.300712668978042	0.570333681386288	0.869165556716967
Merged-chr7-80403019-4	chr7	80402521	80403521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011046)	promoter-TSS (NM_011046)	-209.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	7.46710629494439	7.49988798278189	7.50939607668114	7.70588141212145	7.4930980199975	7.45373836369838	0.0961449220629941	0.672351663763513	0.910773962627634
Merged-chr8-84984822-4	chr8	84984263	84985263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5832.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	7.81498848510796	8.0106507525089	7.45976044009189	7.93623208923581	7.99147230679749	7.80638995474681	0.179163660791892	0.469857597692092	0.819154980713479
Merged-chr10-68731867-2	chr10	68731367	68732367	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8121.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.73941996194912	4.79003264998559	4.91242960119012	5.13531715708453	4.96253177838448	5.41474930334107	0.779451525665071	0.0459497684945156	0.270893321304496
Merged-chr13-58999292-4	chr13	58998778	58999778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	191581.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	7.22265369832224	7.83505355388718	7.67771931545181	7.52224713855365	7.81366757433089	7.60636898942049	0.0748979975799756	0.780479551527164	0.9460578705437
Merged-chr5-115490089-6	chr5	115489650	115490650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5666.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	8.99707575172622	9.11608608203156	8.39493274633256	8.64999891677055	8.96873289381628	8.34304086899949	-0.265496780765058	0.349445630109178	0.737499871486835
Merged-chr1-51908663-2	chr1	51908163	51909163	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	B1_Mur4|SINE|Alu	7315.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.93065117995847	4.96907766410442	4.7893621832298	4.90059553249233	4.76205261389534	4.73594522938376	-0.229896396744458	0.553968621818915	0.862575362378324
Merged-chr7-141131274-4	chr7	141130783	141131783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013782)	promoter-TSS (NM_013782)	-3.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	4.88432993479269	4.64183989657277	4.57946289805806	4.865993226841	4.70013209531456	4.56008693212248	0.00974672998465835	0.981378339665006	0.99570214833188
Merged-chr8-110627126-2	chr8	110626626	110627626	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	MTC|LTR|ERVL-MaLR	8559.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	3.02246352253596	2.88450879688124	3.16661842531794	2.86735914816797	2.82998274660222	2.95523629684508	-0.692228311910747	0.319045384458351	0.71299998254265
Merged-chr2-3283001-2	chr2	3282501	3283501	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1211.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	2.7959877444856	2.90449578555931	2.96174437887037	2.91786561336582	3.06801049496074	2.78610620059424	0.23588437797158	0.739747788752385	0.934245371298156
Merged-chr16-13818697-4	chr16	13818216	13819216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	-535.0	NM_010946	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	7.39999893754061	7.71678619175322	7.61539143021637	7.7500091528317	8.12855494407845	7.57518110592814	0.380969290516841	0.143070154408536	0.50493371709051
Merged-chr8-90961781-4	chr8	90961267	90962267	+	831.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 4 of 39)	intron (NM_177224, intron 4 of 39)	29518.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.95415040721384	5.20596977887177	5.19822518655512	5.31635242522925	5.16200159866247	5.29350078116366	0.272655591205698	0.448682407990518	0.807377993643628
Merged-chr4-33281928-2	chr4	33281428	33282428	+	937.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-28383.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	5.84976036777193	5.68571784211256	5.5803016658295	5.9215585329817	5.96915129383368	5.78201238861324	0.326383081394317	0.293856848444173	0.690438710263513
Merged-chr15-25984303-4	chr15	25983793	25984793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144523)	promoter-TSS (NM_144523)	-73.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	7.94626036150681	7.93723169047009	7.85311448919931	7.71943720864467	7.44002099036392	7.61304871135431	-0.464236996366045	0.0378382851184342	0.2405415255661
Merged-chr10-67284286-2	chr10	67283786	67284786	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	MIR|SINE|MIR	995.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	6.35963411114275	6.32619620222642	5.76702658587404	6.6152822950031	6.49780102500377	5.94215308427662	0.334575010462165	0.337652228188721	0.727543075805154
Merged-chr10-70097988-4	chr10	70097497	70098497	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	CpG	876.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	4.3773350677804	4.03720037096934	4.31791727344496	4.39915356266961	4.30100705289275	4.38533363512976	0.294556085225936	0.524317921244249	0.848650426908011
Merged-chr2-11441992-4	chr2	11441482	11442482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43482.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	6.87081200757741	6.83413516627246	6.49138923772788	6.66570557815579	6.63529773143472	6.65591278561718	-0.161312041187245	0.544372748646332	0.85765692399006
Merged-chr6-73772136-3	chr6	73771635	73772635	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-301114.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	3.18368244731515	3.19753515316694	3.30129403967039	2.84353985152152	2.75104462151827	3.03545849657232	-1.71240007355544	0.0158736003070019	0.138261335114102
Merged-chr11-83063351-4	chr11	83062850	83063850	+	893.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1762.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	6.20501161624238	6.15635438580514	6.30740760116583	6.08261694172967	6.23465046688099	6.27011403270965	-0.0373876634632723	0.893813826505388	0.975280227461205
Merged-chr1-135724319-3	chr1	135723806	135724806	+	600.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	4243.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	2.7323542261286	2.62258278109412	2.84124272682332	2.94575519025787	2.70362478881752	3.14299300741714	1.03272853994151	0.166717439640659	0.54230745573182
Merged-chr10-40347919-3	chr10	40347470	40348470	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1338.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	6.17703942109847	6.57715891845064	6.3008868282076	6.34006182504003	6.61668163545311	6.51093529401027	0.210301802869227	0.46798585736429	0.818225446398854
Merged-chr15-88505266-3	chr15	88504762	88505762	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95040.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.41302724150611	3.22031992079739	3.54945402244802	4.24203549575353	4.05971706594255	3.89521099475804	2.40501078260009	4.95994347442601e-05	0.00157102008610597
Merged-chr10-127636176-2	chr10	127635676	127636676	+	888.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6810.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	6.57448735617661	6.59095880944001	6.66634823019214	5.99074298157045	5.65511554456365	5.77944271334881	-1.34385389142218	3.62181281869413e-06	0.000166960554580555
Merged-chr13-119809123-4	chr13	119808647	119809647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-18025.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	6.36324412284209	6.30185785985673	6.3997748660017	6.82172111053525	6.73663072479717	6.4784333551863	0.548940339833463	0.0414405439553409	0.254478581655794
Merged-chr14-57395084-4	chr14	57394591	57395591	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	3392.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	3.59724781868063	3.48093646406162	3.56131437183627	3.55861638459477	3.49935923927005	3.83204766601103	0.290888096330096	0.609092107298757	0.885053989692691
Merged-chr8-124845336-1	chr8	124844836	124845836	+	789.0	f0_balb.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	17693.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	4.99756938889671	5.26052868747541	5.06583058226707	4.11180721891393	3.89376908490198	4.0927664154901	-2.84798536488777	1.43362111949178e-09	1.54119827016372e-07
Merged-chr13-13590279-4	chr13	13589801	13590801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-108.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	6.20822863185662	6.27997249699164	5.95273511848751	6.48323615071478	6.52705249369776	5.98967414205171	0.339868836495748	0.27741227568062	0.674623586475131
Merged-chr15-44624997-3	chr15	44624504	44625504	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357690, intron 2 of 6)	B3|SINE|B2	5363.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	2.49070251480421	2.71596454688723	2.67626028830245	2.50495257774167	2.44730353073408	2.56341465832279	-0.760781810204834	0.334039115805941	1
Merged-chr6-114874384-7	chr6	114873888	114874888	+	972.2958980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	47433.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.31132709339437	7.54076930591288	7.27896151811598	7.33209528941611	7.41115688917717	7.16611740906517	-0.108842529560032	0.651885044550164	0.902896807825606
Merged-chr17-31040301-2	chr17	31039801	31040801	+	912.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17393.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.93539271379951	8.05611385480762	7.79157754439835	7.65200670641596	8.04916105932207	7.21509240609002	-0.339964077496063	0.234845385313036	0.630984339781408
Merged-chr8-69271022-4	chr8	69270540	69271540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172491)	promoter-TSS (NM_172491)	-40.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	5.88739602827086	5.87286265058871	5.84246387505151	5.62588466158942	5.91127253741636	5.61114144458558	-0.237854266949523	0.449753474336835	0.808012616706586
Merged-chr2-6459681-4	chr2	6459097	6460097	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106861.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.40555135745305	5.09022741650737	4.75355033317576	5.53325680563882	5.02172261312728	5.02609987873681	0.200516827449201	0.63807587227502	0.897380718500389
Merged-chr14-16248717-4	chr14	16248222	16249222	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	454.0	NM_001359882	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	6.47632328184454	6.07325255379303	6.15341472399167	6.31771358287296	6.21421867711896	6.39379325035936	0.0900177821223262	0.759674784029483	0.940561686474309
Merged-chr6-37419764-4	chr6	37419279	37420279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22369.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.49519171114525	6.81585596889109	6.72320505002739	6.70785963856793	7.03145544043999	6.58188329882124	0.179929505440161	0.523756738666556	0.848428438699863
Merged-chr15-9123666-2	chr15	9123166	9124166	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	16788.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.91764018714626	6.03460786588097	6.16534825394455	6.00708578002271	6.15358201070776	6.09918942948422	0.0927817743474023	0.749703482574091	0.93745630986217
Merged-chr18-60268766-3	chr18	60268266	60269266	+	968.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034859, exon 2 of 2)	3' UTR (NM_001034859, exon 2 of 2)	4501.0	NM_001034859	225594.0	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	3.09476696934391	3.01444813960757	3.4098017665701	3.00311594569284	3.15401132697023	3.09832849563617	-0.380340210594171	0.570862437487346	0.869268752259116
Merged-chr13-20897527-1	chr13	20897027	20898027	+	959.0	f1_c57bl6.idr	intron (NM_012054, intron 4 of 20)	intron (NM_012054, intron 4 of 20)	103414.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	3.28244253031897	3.11432307196323	3.46372502246753	3.19578520834272	3.25047039298875	3.26600348713296	-0.205800166940546	0.744348013220748	0.935938186385674
Merged-chr4-149701034-2	chr4	149700587	149701587	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	MTC-int|LTR|ERVL-MaLR	542.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.31840545716444	6.17892718523666	6.39748775403775	6.96496885598045	6.8066882095947	6.68482640793813	0.851543536983539	0.0014305555676832	0.0238574361879084
Merged-chr11-100736217-4	chr11	100735710	100736710	+	769.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2005.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	6.24498100684995	6.49692203884889	6.78189846102667	6.85757736189251	6.94057975880286	6.78088272584761	0.550710878027857	0.0490271589711775	0.281283309913379
Merged-chr15-97672320-3	chr15	97671807	97672807	+	759.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33515.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.53566765462442	4.03704110100171	4.09998146334955	3.62254781923481	3.79703231562615	3.81484704125335	-1.51587879004197	0.00528482124525674	0.063561381357197
Merged-chr6-129501146-3	chr6	129500634	129501634	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 2 of 7)	intron (NM_138648, intron 2 of 7)	6031.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	3.78773195331764	3.66479951013898	3.97376748482466	3.23414139144497	3.06140982391649	3.33343527203361	-2.43716121487861	0.000179984046479233	0.00459134254699167
Merged-chr11-70682099-2	chr11	70681599	70682599	+	784.575012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 7 of 20)	intron (NM_001190379, intron 7 of 20)	6006.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	3.26455969633738	2.77533104559405	3.36792178434713	3.09712351763466	3.13060766709606	3.53914804446776	0.434325944208864	0.557979821268317	0.864443295687764
Merged-chr13-43788487-4	chr13	43787910	43788910	+	811.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	3298.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.59638364478243	7.5719985109002	7.29499257091782	7.19493200403764	7.66972441254572	7.38632792495386	-0.0901777298097861	0.727335706023977	0.930141386998351
Merged-chr3-96576857-4	chr3	96576318	96577318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10017.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	8.45392158857008	8.40252318160054	8.2968290918054	8.31914350388159	8.85715582868914	8.2893113846678	0.190351867989797	0.444619819002888	0.804416644552028
Merged-chr17-70119004-3	chr17	70118504	70119504	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	149931.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	3.64067794360071	3.7841948587238	3.49973979826977	3.23533082554617	3.05767907604179	3.40364521566804	-1.67986795503252	0.00828052470604042	0.0881871111916308
Merged-chr11-70459484-2	chr11	70458984	70459984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	51.0	NM_001029929	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	8.43645596685232	8.33007566374885	8.11498843894119	8.2466241261501	8.50235121136096	8.09918341050455	-0.00662874407225092	0.977328569423803	0.994771164142869
Merged-chr6-113309860-2	chr6	113309360	113310360	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001282126, exon 2 of 13)	exon (NM_001282126, exon 2 of 13)	2723.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	3.09959955821975	2.70603274888451	3.30816969230697	2.98631876394863	2.83326850473658	3.37849455020945	0.104776400013437	0.891475794349371	0.97481556123419
Merged-chr8-91344862-4	chr8	91344363	91345363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	31338.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.74366935899418	3.88825947458025	3.76912341963155	4.13191369810493	4.40816871406354	4.19338667119987	1.33459354611461	0.00819692609075421	0.0875545348086619
Merged-chr10-69260180-4	chr10	69259668	69260668	+	951.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	46974.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.8358773942726	4.56376053588253	4.84731666490866	4.61503733825875	4.61437237008689	5.07829565488875	0.0559631105635094	0.896125790145511	0.97576239248371
Merged-chr2-84799342-4	chr2	84798828	84799828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	500.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	7.51220946150931	7.49990900215449	7.42393055106235	7.68397111668407	7.83264499087036	7.65929195861058	0.36329353658417	0.100975655213613	0.423786054625959
Merged-chr2-52860451-3	chr2	52860013	52861013	+	671.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	2645.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.15778933512888	6.4065039835848	6.28990110542253	6.57386296324559	6.56928365479206	6.36986781168194	0.365354761011774	0.185118867966897	0.56920922234173
Merged-chr14-46993395-3	chr14	46992894	46993894	+	908.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-7946.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.89519512818694	4.84872624080872	5.05187528792156	5.3130357896724	5.25780769729188	5.27970616512281	0.74773485854664	0.0376418616636177	0.239857929457326
Merged-chr9-111120623-2	chr9	111120123	111121123	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	2512.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	3.09877025012127	3.0462480237277	3.17351414140118	3.14924001198507	2.9043533264272	3.18854310738134	-0.106937399055632	0.871998896404591	0.970261003150518
Merged-chr10-108191698-4	chr10	108191202	108192202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	29302.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	6.83785036567911	6.78432428223335	6.53407124389835	6.62067872765303	6.78597038145442	6.69615310077438	-0.0448047117808961	0.864240975827566	0.968269312109804
Merged-chr7-123360383-1	chr7	123359883	123360883	+	587.0	f0_c57.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	9532.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.54251568012055	4.66497030329116	4.59160532090037	4.81687863882125	4.48412168795778	4.84969009373027	0.273839691698669	0.516664305226342	0.844296391152365
Merged-chr9-58630650-4	chr9	58630128	58631128	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 4 of 8)	intron (NM_001357751, intron 4 of 8)	48388.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	5.70402701287073	5.93421606965566	5.77177299997645	6.12839661496635	6.27189887016005	5.96044512438345	0.566484717396749	0.0626873641524511	0.325597576182484
Merged-chr17-33642298-1	chr17	33641798	33642798	+	601.0	f1_c57bl6.idr	intron (NM_001002842, intron 4 of 9)	intron (NM_001002842, intron 4 of 9)	4203.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	3.4749221689422	3.74717183415988	4.07961735474181	3.68372548254405	3.51811019752761	4.1041657342346	0.00345898066796172	0.995456912255428	0.998961028701257
Merged-chr6-124309128-4	chr6	124308603	124309603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 4 of 17)	exon (NM_053094, exon 4 of 17)	4452.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	6.09188076160885	6.35621890733512	6.17394742352244	6.05352458508096	6.26328504016452	6.10450520506959	-0.110764947514355	0.70273820086497	0.922000148631826
Merged-chr12-36041870-4	chr12	36041356	36042356	+	868.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	622.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	7.04320847834448	7.21601146335449	6.56948221992452	5.30873910907184	5.14186404825697	5.22738365980483	-3.06969119037402	5.1509351242942e-20	3.40157944303391e-17
Merged-chr10-81140881-4	chr10	81140460	81141460	+	867.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	4689.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	4.64758528945708	4.63189922536641	5.07243043453103	4.80585020689562	4.80450116619213	5.16628502054884	0.313115015006211	0.456105555426054	0.811360279461309
Merged-chr15-81057899-2	chr15	81057388	81058388	+	674.75	f0_balb.idr|f0_c57.idr	intron (NM_001082536, intron 2 of 13)	G-rich|Low_complexity|Low_complexity	47159.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.20079293047643	2.84158651757511	3.36971233468882	3.21457142584675	2.82606754893013	2.9880973028584	-0.582505711423879	0.42519283460691	0.792988748085012
Merged-chr13-17992751-2	chr13	17992251	17993251	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	600.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	6.74114005963893	7.2525958145166	6.99716000763237	6.95506813863195	7.1468762354686	7.10719369072705	0.0846701199590839	0.753198089043703	0.938549578325581
Merged-chr17-70984800-2	chr17	70984300	70985300	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4|SINE|B4	5716.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.27249039064754	3.65819665144087	3.54439602468862	3.58118264419012	3.38892096205497	3.95358666066801	0.53126217332198	0.393414420135885	0.771547729581095
Merged-chr2-119897218-4	chr2	119896727	119897727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-1.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	8.07663029019586	8.29086931044919	7.67332235384339	7.99498566152689	8.23107263243908	7.84742829944669	-0.00995024252516262	0.969720146445936	0.993198925979166
Merged-chr10-96182393-2	chr10	96181893	96182893	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-43814.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.49063152513737	3.43281333919032	3.89698972252896	3.67138568048101	3.57694605847229	3.77693699739281	0.207128527640404	0.720948170386673	0.928324696220711
Merged-chr6-128845516-4	chr6	128845012	128846012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19197.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.9771780467412	4.70152709204172	5.00719439464297	5.00006820684425	4.95613478803135	5.53811239882036	0.598885775098424	0.146554573995571	0.510700770291626
Merged-chr10-41478564-2	chr10	41478064	41479064	+	890.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138315, exon 3 of 24)	exon (NM_138315, exon 3 of 24)	554.0	NM_001358839	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	4.02769348524527	3.88302823706979	4.15634127290109	3.87958912636972	3.65950619996653	4.04511613385029	-0.494443648616187	0.346258545748391	0.734518319302285
Merged-chr4-130828064-2	chr4	130827564	130828564	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	35527.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.18371928951732	4.15817295464588	4.12518030897931	3.97719856854668	3.88443552269332	4.1930562813744	-0.41621323743567	0.392727428426483	0.771309364942309
Merged-chr19-46489183-2	chr19	46488683	46489683	+	575.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015752)	TTS (NM_015752)	-12465.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.95708308444437	3.83516436898152	4.13821468649649	3.74857108421413	3.93254282384426	4.24729299617338	0.0251878514767087	0.961951034417299	0.990691557558141
Merged-chr14-54431789-1	chr14	54431289	54432289	+	790.5	f0_c57.idr	5' UTR (NM_008608, exon 1 of 10)	5' UTR (NM_008608, exon 1 of 10)	191.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	3.54461050815861	3.42927558486684	3.19869478730232	3.77771471255927	3.44831549155119	3.67841155887554	0.840924030524421	0.173306940379262	0.552045168634777
Merged-chr7-127965007-2	chr7	127964507	127965507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-2472.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	2.22907851388145	2.01111243150563	2.1726665595971	2.29745960117769	2.08888189957344	2.44283282961531	0.978828939377248	0.285948791435772	1
Merged-chr17-24797260-3	chr17	24796779	24797779	+	706.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-7103.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	3.0719429662486	3.23343875477398	3.05614351369504	2.920764447885	2.82846844393284	3.00960522292206	-1.00720700202284	0.141620902948594	0.502300317871257
Merged-chr11-17003030-4	chr11	17002510	17003510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5708.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.78213489565366	7.77513290068637	7.53579503001939	7.39435698493244	7.81145518192085	7.65972236752037	-0.101711936655598	0.676950555351352	0.912626330986626
Merged-chr17-33524110-4	chr17	33523602	33524602	+	967.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172619)	promoter-TSS (NM_172619)	17.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	3.34120220370762	3.5498115168199	3.38799907400933	3.57657832037583	3.53032009825604	3.67578971951032	0.577612292264538	0.318646619543801	0.712587290878322
Merged-chr8-83696890-2	chr8	83696362	83697362	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	2317.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.01404074955037	4.89504927576872	5.20335805919133	5.47595871262749	5.56363560840137	5.76372268409119	1.1317580189278	0.00137099777465526	0.0230833635842807
Merged-chr14-17716431-2	chr14	17715931	17716931	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	55471.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.22416927206235	3.06329720676758	2.7947153231025	2.95663939978171	2.89819931156322	3.11869160276133	-0.246056337271758	0.731220174453954	0.931352073780992
Merged-chr10-123076447-4	chr10	123075940	123076940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153395)	promoter-TSS (NM_153395)	65.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	7.83504016105621	7.48944740046095	7.43641553106466	7.65376809108938	7.13921953261005	7.16640783104221	-0.378912951063393	0.170196190276227	0.547518417123576
Merged-chr16-10438214-4	chr16	10437717	10438717	+	867.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	9145.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.22162691139264	4.3049874786164	4.09721494918846	4.20475106173039	4.30352257272234	3.96058173736327	-0.11344735821488	0.814816270640483	0.956370078970016
Merged-chr3-51427969-4	chr3	51427463	51428463	+	801.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	11947.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	5.63191372816804	5.80584830650279	5.67460532981964	5.81480479860524	5.7219239517898	5.91147170683056	0.185822822355024	0.549111192686007	0.860215389264136
Merged-chr6-28485451-4	chr6	28484921	28485921	+	716.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	L2a|LINE|L2	5073.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	4.12507448516298	3.92765216220887	4.32263718558042	4.36328368720447	4.38646956277095	4.3467568387943	0.661977558333896	0.159437223114758	0.531636309246326
Merged-chr2-91485921-4	chr2	91485416	91486416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 17 of 38)	exon (NM_172668, exon 17 of 38)	28385.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	7.79506814073536	8.05454216444969	7.64085254698384	7.6003270477415	7.91598079882603	7.47543229547105	-0.231262112279054	0.365922663119053	0.751005707138497
Merged-chr11-107313796-2	chr11	107313296	107314296	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-124415.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	3.55446671521641	3.04634295569975	3.42663662458488	3.54489647453911	3.15047629305613	3.7521247403609	0.521383778489842	0.445129477217319	0.804872520246951
Merged-chr2-126499906-4	chr2	126499421	126500421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-74.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.04911906276442	6.13859186402587	6.04220260831083	4.94618077103702	5.14704921468619	5.10291478361456	-1.90915221084864	1.28983050172709e-08	1.13690907190369e-06
Merged-chr2-27741021-2	chr2	27740521	27741521	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	30438.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.30082685022225	7.54224811846007	7.48076463978169	7.17285577106599	7.4055764239011	6.85370061865812	-0.397149066500823	0.13526926332489	0.491436830160489
Merged-chr10-117302041-4	chr10	117301526	117302526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9158.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	5.70010402824195	5.58985525584154	5.45614411271833	5.5695481455719	5.42362893792855	5.57728987211905	-0.138646960308531	0.67137129296637	0.910495681609417
Merged-chr11-98747275-7	chr11	98746554	98747554	+	808.0761719999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	5269.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	5.33731773776865	5.26724303852214	5.40565665562569	5.77940979338999	5.57407655879614	5.3760064253321	0.498906876053364	0.142409971098008	0.503768764353502
Merged-chr18-12733518-2	chr18	12733018	12734018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 11 of 13)	intron (NM_028341, intron 11 of 13)	-7837.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.21436721948645	4.19423011682177	4.08672353105954	4.30200023849573	4.21562751456617	4.42629545688794	0.380801107992657	0.409169891788703	0.782581504561646
Merged-chr12-28637215-1	chr12	28636715	28637715	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	2.4793696482754	2.68853283490948	2.66898642138929	2.71005278168406	2.68760007923528	2.97937448896941	0.961240891140631	0.211358874876552	0.603905867353298
Merged-chr19-55252700-2	chr19	55252200	55253200	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027976)	promoter-TSS (NM_027976)	-669.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	4.3431897136176	4.21782300973215	4.23519873843644	4.21513871259263	4.07905855459322	4.38985193571999	-0.120145898246297	0.796340388906688	0.951423520427133
Merged-chr2-174018811-2	chr2	174018311	174019311	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58240.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.28461410703931	4.20427225675213	4.55660431051499	4.5054054929854	4.60097654574858	4.69878286203372	0.645748345768607	0.1425055679169	0.503871299674048
Merged-chr5-122780679-2	chr5	122780179	122781179	+	890.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	3.65843127274105	3.67757748732055	3.65006910497026	3.50379166852129	3.29284809627498	3.61596850292827	-0.703572204206803	0.222818680172336	0.617762786211506
Merged-chr15-78607037-2	chr15	78606537	78607537	+	911.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_028195, exon 5 of 13)	exon (NM_028195, exon 5 of 13)	9990.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.39905228737341	5.72984465720939	5.84128222319544	5.99758568074216	5.65043590153468	5.52947014851269	0.149164922819447	0.668513100760827	0.909204788456481
Merged-chr1-181540621-4	chr1	181540106	181541106	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29155.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	2.69047118576863	2.78051032586662	2.80206479764478	2.52580358164868	2.59553559200347	2.49932401997241	-1.23106681387347	0.115481603333374	1
Merged-chr10-13323441-4	chr10	13322917	13323917	+	881.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	872.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.2503633385262	5.61423722911236	5.6712866090396	5.409743888764	5.50298792912983	5.51843396015132	-0.0797763816637474	0.816839302030584	0.956754861188725
Merged-chr17-34627484-4	chr17	34626924	34627924	+	843.8988039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019441)	promoter-TSS (NM_019441)	11.0	NM_001302396	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	6.06478197229291	5.57600170523807	6.06025269425873	5.42567909506606	5.11798992142167	5.45884446301937	-1.08725718345966	0.00232773457255019	0.034707086781019
Merged-chr16-90222449-6	chr16	90221962	90222962	+	985.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1720.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	5.52841639358685	5.46497099079859	5.00126103709896	5.29691742435038	5.50700902330829	5.28455314431156	0.0149875317926758	0.967816725688319	0.992617856883157
Merged-chr10-94020777-3	chr10	94020279	94021279	+	802.972229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304720, intron 1 of 11)	intron (NM_001304720, intron 1 of 11)	14963.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	4.74760250795585	4.91023436053373	4.62879164177876	5.05745669122173	5.54345944533661	5.16095138543004	1.07440221686669	0.00760610071039594	0.0829799957926609
Merged-chr1-52844352-3	chr1	52843831	52844831	+	781.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-707.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	4.44717802510453	4.67729500208365	4.64673707692474	4.41497093391305	5.00008221376293	4.89919580877049	0.482604165351599	0.27659446357979	0.674003097641857
Merged-chr18-39582095-3	chr18	39581594	39582594	+	896.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94849.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.75464008249796	4.18259808551245	4.18018518729756	4.11097945884741	3.93322510011633	4.06494388629329	-0.0479317783138609	0.926008325228709	0.983305773102619
Merged-chr15-90224236-4	chr15	90223731	90224731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033441)	promoter-TSS (NM_001033441)	-80.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	6.02417371773017	5.73695418184273	5.78122889581836	5.81661180646408	5.87812054025188	5.98749556619385	0.0610997055215494	0.842935206319784	0.963230717210186
Merged-chr4-39611235-4	chr4	39610753	39611753	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	160960.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	3.79532648647002	3.85317952100538	3.9932381027989	4.09418606338244	3.9077042566484	4.15328819361457	0.52001487612837	0.302178778356875	0.698940673528628
Merged-chr13-12393763-2	chr13	12393263	12394263	+	825.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1612.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	2.98799654372795	3.29090657224404	3.32410608530906	3.0194161414266	3.25859757028522	3.39437188224353	0.0956984574302412	0.886040755594253	0.973674760515678
Merged-chr14-50831505-2	chr14	50831005	50832005	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 44 of 54)	intron (NM_009351, intron 44 of 54)	23589.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	2.80221641543581	2.62255097464675	2.77649833591219	2.859088995225	2.73169650773996	3.19334699764638	1.00164986971306	0.181229598485363	0.563574247882485
Merged-chr1-171017945-4	chr1	171017376	171018376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	7.33193040041221	7.44328878092439	7.59321876780684	7.37207104418274	7.63811058805536	7.40120268294732	0.0387061291482299	0.871256989430286	0.970222087171093
Merged-chr11-46812628-4	chr11	46812110	46813110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	1811.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.74171065581493	7.90354596575414	7.61093604465965	8.04599250900137	8.28500330917566	7.38694810724003	0.298923299042337	0.307120578474946	0.703221678274497
Merged-chr10-128498800-4	chr10	128498278	128499278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131150)	promoter-TSS (NR_131150)	-93.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	5.87428919383581	5.810913811863	5.70254834015396	6.10223752607433	6.12630007566678	5.96978167392712	0.471684250402592	0.111672946866935	0.446344673646809
Merged-chr7-141414195-4	chr7	141413698	141414698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172116)	promoter-TSS (NM_172116)	-73.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	5.09764354706011	4.85799661874912	5.63223879053817	5.36088905392499	5.32767213557245	5.37234987841748	0.258992850537021	0.516682456374899	0.844296391152365
Merged-chr8-13640477-3	chr8	13639983	13640983	+	903.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	37104.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.28265754153504	4.29297257682625	4.82281015136257	3.92111316484148	3.99267275574301	4.15888727705982	-1.24926852202352	0.0133456180366744	0.122838737344647
Merged-chr18-60515720-3	chr18	60515194	60516194	+	598.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-10460.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	3.85155801611818	3.8137694427322	3.60422524357108	3.47743662312944	3.34427789970862	3.77888345064782	-0.799637394336815	0.171691271290678	0.549993736344744
Merged-chr5-140763551-5	chr5	140763181	140764181	+	819.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	39554.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.81879924624077	6.18846091020722	6.19916784792288	5.48933049182749	5.64119343850995	5.45309491928967	-0.967339149915923	0.00313725183653476	0.0435945976643928
Merged-chr19-29448560-4	chr19	29448063	29449063	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 4 of 5)	RLTR14-int|LTR|ERV1	37644.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.9393293643664	4.82182513974912	5.11126442430555	4.70889648753923	4.9870991122787	4.97473229115263	-0.124381033431601	0.751116033441143	0.937718261890661
Merged-chr10-51455597-3	chr10	51455092	51456092	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25020.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.74176968651524	7.85055321362218	7.55035646255936	7.78955934436859	8.15574196392091	7.67540124465978	0.249265787236433	0.319775812753599	0.713693091239779
Merged-chr5-97009239-4	chr5	97008747	97009747	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	11558.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	5.60868029178833	5.47941993117473	5.67402387459644	5.79649447955791	5.64233143671852	5.70972900549611	0.243078784457426	0.44259380998011	0.803284363641017
Merged-chr8-31157245-2	chr8	31156735	31157735	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_103719, intron 5 of 7)	intron (NR_103719, intron 5 of 7)	6919.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	3.7121877252794	3.59245449381973	4.13886601784101	3.70639866555411	3.70104340642048	3.94296224815155	-0.13636762717614	0.809154306650904	0.954721853010197
Merged-chr11-79140338-4	chr11	79139854	79140854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	6119.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	5.1488166593734	4.842584125366	4.61339350146555	4.66828642152876	4.98862259037163	5.16305588445096	0.120445864325814	0.778585990856599	0.945520893795831
Merged-chr7-99482129-1	chr7	99481629	99482629	+	774.0	f1_balb.idr	TTS (NR_002172)	TTS (NR_002172)	803.0	NR_002172	449630.0	Mm.454449	NR_002172	ENSMUSG00000065822	Snord15a	EG449630|Gm5774|RNU15A|Rnu15-a|U15A	small nucleolar RNA, C/D box 15A	snoRNA	4.01594962960202	3.87473507560069	3.74183623999046	4.05840883068649	3.63773231645093	3.64518638865458	-0.281341945094218	0.612929810067614	0.886969289870611
Merged-chr11-121228040-2	chr11	121227540	121228540	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252548, intron 2 of 6)	intron (NM_001252548, intron 2 of 6)	900.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	4.72667878240711	4.7106426754748	4.72722252232873	4.65671314171791	4.53046545128143	4.75459966021458	-0.187572622518808	0.642794280502135	0.899532469670737
Merged-chr10-128493902-4	chr10	128493411	128494411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-25.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	8.57020549765109	8.53087968602451	8.26622940180329	8.61785320689381	8.80930227605741	8.21480434783838	0.154802333301001	0.532199017848782	0.851971173271146
Merged-chr7-145115010-2	chr7	145114510	145115510	+	953.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93109.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	2.54959218054718	2.4403734062918	2.67107452987238	2.43958547107968	2.36616339513023	2.86000736394622	0.0809715922897147	0.922218073417033	1
Merged-chr3-106499082-2	chr3	106498582	106499582	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 9 of 11)	intron (NM_001093754, intron 9 of 11)	13042.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	3.97365051863445	3.87630167742463	4.47177172057855	4.31550255265812	4.0288372601637	4.3385078410227	0.29767299745799	0.567773743234635	0.868309005726251
Merged-chr12-52502321-4	chr12	52501828	52502828	+	961.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13749.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	4.42342043964054	4.49125091286609	4.52912686116448	4.95136157265499	5.35055762756068	4.88461994672053	1.40008368619044	0.000747863602837679	0.0144013503043086
Merged-chr15-96627390-4	chr15	96626862	96627862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	14600.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.32072725046013	6.25819592169626	6.11669801496053	6.50984913969902	6.52763516497072	6.28460406956611	0.349571132987625	0.208455506535993	0.599337828187015
Merged-chr10-78574689-7	chr10	78574214	78575214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359303)	promoter-TSS (NM_001359303)	201.0	NM_001359301	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	8.21490507835574	8.42600466830363	8.07343688824561	8.27752520788953	8.41135726445301	7.65112970310211	-0.120596286425472	0.662470913142623	0.906804932599005
Merged-chr15-89180840-4	chr15	89180342	89181342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138749)	promoter-TSS (NM_138749)	-54.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	6.8851467896277	6.67042081224713	6.60582435720307	6.73309576199916	6.4883838644308	6.90884021635169	-0.0305037741914312	0.912025335439723	0.980237529509273
Merged-chr14-63132486-4	chr14	63131977	63132977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	10015.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.89177258313281	7.95875895886983	7.35050645418657	7.82984372166309	7.79540530143188	7.46460273701898	-0.0841456160338251	0.756044230078515	0.939527320894303
Merged-chr14-66186266-4	chr14	66185763	66186763	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27561.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.46466664604296	6.25393691183954	6.11289691970777	6.63124701113989	6.88186395179952	6.60913928648348	0.685529061938022	0.0150945324539301	0.133301816330668
Merged-chr10-59887560-4	chr10	59887011	59888011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	ID4|SINE|ID	7920.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	6.9115075222175	6.90148275481854	6.65256900987823	6.85521122617189	6.80153845244045	7.12191320833593	0.141257477376256	0.590659648375474	0.877301111216348
Merged-chr4-11481296-4	chr4	11480801	11481801	+	893.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4657.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	4.85494878981401	4.66662148536558	4.79541252623361	5.25285846816115	5.26752465700333	5.11891862043406	0.961915854934292	0.0100448625935436	0.100688221501455
Merged-chr19-24997367-4	chr19	24996893	24997893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.75495441739233	5.66709521198874	5.77369423054523	5.88819600701384	5.84152110798155	6.20966753538118	0.442841608775535	0.156771002552925	0.527613063058663
Merged-chr7-118479992-3	chr7	118479502	118480502	+	797.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	11973.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	6.77320074792999	6.52423656995539	6.64839636781733	6.53853677575882	6.69031186099231	6.27986037110954	-0.200690323000842	0.472890766611618	0.820550293768681
Merged-chr11-101232279-3	chr11	101231786	101232786	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5823.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	5.39701243367736	5.58498591348235	5.72078706838798	5.34845420399218	5.2915428649917	5.63074710595729	-0.281500574104231	0.414107811188155	0.785615201854629
Merged-chr7-80246353-4	chr7	80245844	80246844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177765)	promoter-TSS (NM_177765)	-32.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	5.38066685213979	5.69670711899665	5.51012834212696	5.59159164650891	5.3951371714188	5.36103135721957	-0.160700924160894	0.636625447533709	0.89720767300409
Merged-chr14-66847756-4	chr14	66847267	66848267	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	20833.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	5.11577870469403	4.7928407484255	4.40592085275075	4.64194930438634	4.55969063909977	5.3391403659684	0.180332735597031	0.718047778441119	0.927249469209724
Merged-chr11-80163930-2	chr11	80163430	80164430	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.10949249841882	5.18567191125066	5.60779792907409	5.15136417252797	5.56875813531283	5.59224483128092	0.28440578276275	0.454013121901587	0.810100289331925
Merged-chr4-126156149-5	chr4	126155566	126156566	+	771.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	6599.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	5.63943882572928	5.80015765722247	5.97707247275579	5.87387443235043	6.11983328315027	6.16514275183059	0.446110697198682	0.150337650404786	0.517246479850651
Merged-chr6-70875408-4	chr6	70874920	70875920	+	945.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30905.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	4.66216503360329	4.79023968830587	4.45768843510466	5.091407820454	5.11332997587473	4.70801680264848	0.762025017019147	0.0689137792384199	0.343528501250326
Merged-chr3-119764117-4	chr3	119763694	119764694	+	775.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	19194.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.12917756830822	4.07091729373481	3.96310269906326	4.17651403309092	4.05047257525297	4.43716957720864	0.451661698068404	0.356307697840842	0.743216538114882
Merged-chr2-52959243-4	chr2	52958739	52959739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	101371.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.75817419579709	5.63507264347133	5.3970118134572	5.30732058773424	5.5923069630308	5.29831448416539	-0.371413140611637	0.286217292409724	0.683472010443741
Merged-chr1-153490096-2	chr1	153489596	153490596	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2436.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	5.85866282626066	5.90965401462288	6.15203214377204	5.73004274037905	5.93038583699249	6.08891007996697	-0.090023699322121	0.772109949940934	0.943680976839558
Merged-chr16-90259957-4	chr16	90259466	90260466	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	24520.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	6.25091486977003	6.26809573609976	5.50568139159438	5.96635418271713	5.80347538820378	5.60240658002125	-0.459798509832108	0.205926508192961	0.596518913737799
Merged-chr19-34445789-4	chr19	34445214	34446214	+	845.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29421.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	4.84032168828071	5.20953725797995	4.95905744753057	5.0685444595823	5.48213710342763	4.86946950126309	0.343147605403188	0.405714701075978	0.780396697117115
Merged-chr8-119440592-4	chr8	119440094	119441094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	3432.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	5.91645646410826	5.48573805140825	5.80946470856637	5.75053448247638	5.50568095099564	5.87068774640784	-0.0724294584909226	0.831012574084023	0.960386870156299
Merged-chr7-16244291-4	chr7	16243804	16244804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176912)	promoter-TSS (NM_176912)	-150.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	7.0620354640248	6.65695809022729	7.02583204335218	7.30376891142979	7.40180553291361	7.22146959569299	0.590240029879371	0.0219883552136266	0.171923234412276
Merged-chr10-77962874-4	chr10	77962346	77963346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	7026.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.18912701386112	6.70244195927077	6.85890782895932	7.26049203093961	7.29331330216506	6.70828476668425	0.284361877150681	0.340261556328051	0.72994775514849
Merged-chr7-118802043-3	chr7	118801537	118802537	+	733.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	53576.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.26389807869598	4.36795121275161	4.36266509640739	4.36540082573958	4.83216832423962	4.43089792266022	0.609521156472419	0.182465521290889	0.5653332996564
Merged-chr6-37197015-3	chr6	37196514	37197514	+	923.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	102962.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	3.34234632367899	3.25511903887837	2.90537243308981	3.2949606763005	3.13614569288725	3.45958741052257	0.463720978575444	0.506242790266688	0.838361032789543
Merged-chr2-90480460-2	chr2	90479960	90480960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-1286.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.52140947138389	6.12041566242104	6.52303696086623	6.57154632622467	6.74902691150601	6.31978644902426	0.277917563192386	0.352234872706622	0.739888459678721
Merged-chr19-3913471-2	chr19	3912971	3913971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-697.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	6.73329106379335	6.81224127360992	6.99604408389342	6.91796642562661	7.28719242953757	6.3731048262166	0.122987862381321	0.701158051923667	0.921164588055017
Merged-chr8-120704412-3	chr8	120703927	120704927	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31931.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	2.54455292420651	2.1915568367222	2.33106256393907	2.60304654760581	2.52628400089499	2.60478713664244	1.29845469505282	0.138903179780286	1
Merged-chr19-4756495-4	chr19	4755984	4756984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-41.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	8.50602223802597	8.55170686721983	8.1066961297502	8.43459411840744	8.48085160487049	8.17652525891662	-0.0480374123181621	0.839564657210985	0.962784121274377
Merged-chr15-83034153-3	chr15	83033610	83034610	+	734.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	-713.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	5.55682724338243	5.53229106758813	5.98385862354305	6.17549618416108	5.93247793853591	6.19018070856839	0.718020766869018	0.0271410234540934	0.196241769166511
Merged-chr10-121368180-2	chr10	121367680	121368680	+	696.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3090.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.98333471003598	5.80024258121101	5.69000755934803	6.07792764332814	6.09710433567841	5.78043553481207	0.290052819822452	0.353172517129815	0.740535792477092
Merged-chr14-63118274-2	chr14	63117774	63118774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.37616945494523	6.17320624464979	6.29592596503178	6.32332015904372	6.35145483717158	6.37505094978144	0.108690264065128	0.690625097821752	0.917915728386653
Merged-chr10-91168346-3	chr10	91167918	91168918	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 1 of 8)	B1_Mus1|SINE|Alu	2132.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.30662337337864	4.15720502367122	4.28825465618987	4.3077449697621	4.46053821980875	4.85527709579092	0.773395157704686	0.0976326261985747	0.41671277562098
Merged-chr17-5592591-2	chr17	5592091	5593091	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99991.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.02927750664757	7.65209132486827	7.95846111353464	7.76859935475314	7.81599282669312	7.73237000217201	-0.163289150984782	0.480426534010439	0.824543506620807
Merged-chr4-150569426-6	chr4	150568862	150569862	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	CpG	82812.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.80351583670899	8.05022399615114	7.89519897517501	7.91211530234254	7.97525178804857	7.82126991080838	-0.0203939064777524	0.926021986465707	0.983305773102619
Merged-chr17-35379517-4	chr17	35379038	35380038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-79.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	8.56277425901174	8.55595439158173	7.91149451391639	8.33589054184607	8.4915540848828	8.04757780740475	-0.105738192156034	0.697541878457633	0.92000165836138
Merged-chr7-122137269-2	chr7	122136769	122137769	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	4228.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	5.31873608584806	5.07431818407691	5.69774635955605	5.65579472473532	5.36639380767319	5.57989526434265	0.308024374695443	0.407053868277032	0.781263634491412
Merged-chr9-40727773-3	chr9	40727266	40728266	+	989.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	MTC|LTR|ERVL-MaLR	41802.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.16101874178066	3.92593861389503	4.02297721930908	3.26089869812203	3.0213308457351	3.35202824745273	-3.53679382889717	8.10891434792594e-07	4.51020417822341e-05
Merged-chr11-11685575-4	chr11	11685083	11686083	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301868)	promoter-TSS (NM_001301868)	-342.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	7.01151862005553	6.90182132585049	6.75147553801686	6.73942883208025	6.29645268439435	6.85482595904895	-0.400089170973486	0.164094111232663	0.538192463833164
Merged-chr19-60666027-4	chr19	60665546	60666546	+	954.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-85023.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	3.64851523143001	3.43263804298982	3.50439709074374	4.44932810424734	3.97082599340723	4.02059837387277	2.03501230235136	0.000383220192563252	0.00851227596978191
Merged-chr19-7482843-1	chr19	7482343	7483343	+	1000.0	f0_c57.idr	intron (NM_001003934, intron 1 of 8)	CpG	448.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	7.30734383386445	7.45700620402792	7.25502640840625	7.33527175585577	7.33364735840943	7.53511662747173	0.0779947712544673	0.739465600530145	0.934245371298156
Merged-chr16-21590499-3	chr16	21590015	21591015	+	687.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	104150.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.62808727414478	5.30806815184528	5.22385990860708	4.9539363362957	4.97681284693695	4.97078093718515	-0.901663095492425	0.014673773093548	0.130592217821234
Merged-chr7-118488334-4	chr7	118487863	118488863	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	3612.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.97630828159408	6.00896749661708	5.98954578934146	6.62225432295628	6.54792230075383	6.46528388046398	0.925928642837992	0.000695276545966044	0.0136091674515979
Merged-chr6-124745168-2	chr6	124744668	124745668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 7 of 10)	exon (NM_007881, exon 7 of 10)	-4089.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	4.75623236176471	4.57644626363577	4.62752122403443	4.54411439573219	4.36237250758578	4.65401276866117	-0.34477182836389	0.416101416631547	0.787028702379474
Merged-chr11-116782812-4	chr11	116782322	116783322	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	-7315.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	5.54128402031043	5.56455700700074	5.08656186560259	4.28542904388532	4.12698652639531	4.60694749436893	-2.53839573376332	7.97890181159784e-09	7.41797164178138e-07
Merged-chr2-30435847-6	chr2	30435324	30436324	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 5 of 9)	(TG)n|Simple_repeat|Simple_repeat	19774.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	3.94867157193374	3.82878461697231	3.6125979032408	3.62063332554967	3.57250251114379	3.79040386239772	-0.509666603538129	0.355605445251861	0.742472851181279
Merged-chr4-32343421-4	chr4	32342917	32343917	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74018.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.44904602321383	6.22798106345238	6.3143460195912	4.62855975495306	4.85512500719573	5.1534083053004	-2.7949521192609	1.05841633094149e-14	2.79583193857077e-12
Merged-chr19-24990152-4	chr19	24989654	24990654	+	796.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-9375.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.85534532287832	5.64466212308795	5.79886174518013	6.03620074593048	6.24541238398861	6.20088548313525	0.694736777145785	0.0200154675679526	0.161457511931913
Merged-chr14-70981264-3	chr14	70980759	70981759	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91152.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.24806978328615	4.57146392305037	3.94523767289917	3.50541885310695	3.30607812410878	3.80574407870338	-2.47782041644422	5.37170652996926e-05	0.00167789331818246
Merged-chr1-77831981-3	chr1	77831471	77832471	+	740.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-316883.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	5.33682888425063	5.34890664283953	5.311079044411	5.29160462869105	5.35576514003668	5.3744973572813	0.0131625847900216	0.968764196106038	0.992866574393222
Merged-chr15-76511978-4	chr15	76511481	76512481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010046)	promoter-TSS (NM_010046)	13.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	7.68874974739404	7.67334388606167	7.68963551200635	7.87588428589438	8.05490701210805	7.56466660336563	0.249391273091142	0.296764443960744	0.693396705620489
Merged-chr8-13661643-3	chr8	13661162	13662162	+	704.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	Lx7|LINE|L1	15925.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.24680428089044	5.05364857900242	5.32929676468318	5.10926234844645	4.79413394250036	5.3629313989392	-0.237680248227128	0.544229005226758	0.857655436873259
Merged-chr16-87663615-1	chr16	87663115	87664115	+	635.0	f1_balb.idr	Intergenic	Intergenic	-35339.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.69248809428584	5.97493855114618	5.90122791046997	5.8555978243585	5.71192457629841	5.76474748645897	-0.150985623190035	0.626680642639653	0.892916235446326
Merged-chr11-51689841-2	chr11	51689341	51690341	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	5.34738857536882	5.67841112743132	5.37039432871569	5.48320435036791	5.20162574281786	5.60594118245824	-0.098420606084403	0.783302709898715	0.947047832110637
Merged-chr15-99030055-7	chr15	99029579	99030579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009448, exon 1 of 4)	5' UTR (NM_009448, exon 1 of 4)	188.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	8.69391748975582	8.49618253164462	8.20172542204907	8.41214823626655	8.64960603744716	8.18165798559112	-0.0695114409341726	0.780106399735779	0.945949149660645
Merged-chr18-76242216-4	chr18	76241712	76242712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010754, intron 1 of 10)	G-rich|Low_complexity|Low_complexity	511.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	6.89221595871629	6.53679690545811	6.77468463064833	7.02399041133627	6.33049516134986	6.66008971574616	-0.0637808116358902	0.836569970377624	0.962001762335242
Merged-chr11-103971038-2	chr11	103970538	103971538	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 2 of 4)	intron (NM_007477, intron 2 of 4)	4167.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	4.02461058211658	3.70713413034883	3.9044832973778	3.69218003142752	3.50719397430883	3.82662579538856	-0.695892342518835	0.207044497702149	0.597920729067479
Merged-chr7-135651910-4	chr7	135651395	135652395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-4.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	7.09447931694848	7.6171980330197	7.20421590355438	7.31435570117711	7.41323294854121	7.32047372275824	0.0287588511273295	0.912593363764034	0.9803740348902
Merged-chr15-94589188-2	chr15	94588688	94589688	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008971, intron 1 of 8)	intron (NM_008971, intron 1 of 8)	636.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	7.55085944858236	8.29027253707601	8.07068100469237	7.97588208498126	8.13600808673907	8.16046731940059	0.118038641461193	0.661328630874057	0.90634186627476
Merged-chr16-91562184-4	chr16	91561676	91562676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 6 of 6)	intron (NM_008338, intron 6 of 6)	15082.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.55428922335372	6.50217494679044	6.53927491393884	6.78509140987363	6.97581035273198	6.71633987306563	0.483768341490676	0.0605576340207133	0.31867375766048
Merged-chr7-43396983-4	chr7	43396500	43397500	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11280.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	4.07894590480059	4.18953622853303	4.2264520849875	4.09989938623884	4.12253357686427	4.29338321664435	0.0147449815760322	0.974940974635541	0.994396771481663
Merged-chr19-47090752-4	chr19	47090254	47091254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	-12.0	NM_011053	18572.0	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	8.61785818591674	8.84112593198083	8.16562877099043	8.41898815313515	8.76196989141254	8.19298732184545	-0.127282730261884	0.643811519927465	0.899990653857957
Merged-chr3-152192335-10	chr3	152191847	152192847	+	926.8800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356364, intron 1 of 2)	intron (NM_001356364, intron 1 of 2)	1498.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	5.46135975042431	5.94916774909188	5.65207345256065	5.68121930272313	5.41602660372033	5.48682623263861	-0.329726259837978	0.341817196670502	0.731017930321085
Merged-chr1-127225275-4	chr1	127224765	127225765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20279.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.67548656086416	6.82065506237955	6.60404287078517	6.63644238111993	6.74939262452071	6.5222007007828	-0.0974271520865365	0.709606472787577	0.92401439884764
Merged-chr15-25404022-4	chr15	25403518	25404518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	9746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.42432145800433	5.04840302149505	5.18561705850532	5.01868305594668	5.04403443120277	4.93210582763158	-0.475327982079177	0.204410885221868	0.594949662456522
Merged-chr7-45061431-2	chr7	45060931	45061931	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025533)	promoter-TSS (NM_025533)	221.0	NM_022999	65116.0	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	2.69682288325091	2.92629231996895	2.92649508078572	3.02740154120428	2.75180762600979	3.27882500578654	0.834619876030475	0.260153519529841	0.657649400461384
Merged-chr11-103308084-4	chr11	103307590	103308590	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	36612.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.28907445760366	6.05013814497812	6.5203019591157	6.89833541052532	6.76626434949237	6.49093490957364	0.717126283851825	0.014400686818217	0.129122020341617
Merged-chr12-111437348-4	chr12	111436860	111437860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5301.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.8008359842577	8.61520074033564	8.19956122700423	8.42264075863013	8.67766803651125	8.14227948420863	-0.179057954758479	0.498752740389449	0.834108172655973
Merged-chr19-3944259-2	chr19	3943759	3944759	+	747.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_019449, exon 9 of 11)	exon (NM_019449, exon 9 of 11)	9073.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	3.130790580257	3.26913444572548	3.59695934668808	3.47135612371791	3.20087658011037	3.51507083327466	0.226270880164006	0.724097541097596	0.92918571470947
Merged-chr7-138848488-2	chr7	138847988	138848988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	2102.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	4.36709290238542	4.10084789415404	4.19499653436002	4.28201507693088	4.41814313082434	4.16803884591527	0.199911631083186	0.669608888453835	0.909692012644768
Merged-chr14-121894685-4	chr14	121894169	121895169	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15261.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	5.57352733961274	5.86912561024984	5.58158652206692	5.85245271175271	5.84718522476828	5.72793639523474	0.225315414788182	0.479284261251575	0.824160135779228
Merged-chr2-91265743-2	chr2	91265298	91266298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 2 of 15)	intron (NM_023854, intron 2 of 15)	683.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	7.50123007115506	7.86922559840625	7.47888519663655	7.51169729942989	7.79019490801199	7.32548716205433	-0.0998373706215385	0.704058609313189	0.922363248706409
Merged-chr11-49845374-4	chr11	49844886	49845886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1365.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	5.77600402460863	5.65571778235364	5.81477849936745	6.61855496411099	6.61859184813945	6.20905551452627	1.29031511526797	1.56775024768363e-05	0.000590535819869892
Merged-chr1-89876817-4	chr1	89876322	89877322	+	876.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 15 of 16)	intron (NM_001037136, intron 15 of 16)	54354.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	2.38868587623533	2.50363104137588	2.53486203727882	2.20557842106645	2.28024985874646	2.48434458131511	-0.986982011260818	0.247213282183635	1
Merged-chr6-35597255-4	chr6	35596736	35597736	+	880.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57348.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.04730474127945	3.32747298055536	3.07816733457824	3.18822604590062	3.05923997184591	3.4839781228893	0.36462753094049	0.587349670027561	0.875861419445748
Merged-chr5-23431208-2	chr5	23430708	23431708	+	671.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040469)	TTS (NR_040469)	3145.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.16177965853003	4.0598789161404	4.15031671051859	4.17923058014096	4.08182889380668	4.51184636720833	0.375907166031687	0.436385996749483	0.799472869647494
Merged-chr19-9932460-2	chr19	9931976	9932976	+	930.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-32943.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	5.59143232222359	5.86065683538273	5.49558734958024	5.23969480176628	5.19438042706807	5.06066704520746	-0.961003816936921	0.00601904986830698	0.0699292238818888
Merged-chr2-144698193-4	chr2	144697692	144698692	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	98239.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	4.87380308564521	4.7400546737624	4.69036100712511	4.12994921835016	4.11040607366825	4.13800090314884	-1.68701336369801	0.000160627509764737	0.00419638738854136
Merged-chr11-59393836-2	chr11	59393336	59394336	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18183.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	2.80296993420222	2.59369023355424	3.05519551841575	2.69937920809046	2.55053267440512	2.78301407897327	-0.779009503002157	0.314941148573064	0.709299260050302
Merged-chr10-81267558-2	chr10	81267058	81268058	+	658.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	-614.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	5.92374686041096	5.90720887891211	5.89190063859065	6.07372362067028	6.44588499871596	6.07211132694245	0.537144309940889	0.0758425153679388	0.362539808419832
Merged-chr12-119484144-4	chr12	119483630	119484630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40720.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	3.9260314336289	4.16609824268138	3.84308287937204	4.28443295591053	4.23237278999054	3.80286260508009	0.400883671520709	0.450422638947675	0.808359221412263
Merged-chr4-145354069-3	chr4	145353562	145354562	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38915.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	3.00726055932779	3.41807273499341	3.22874781425832	3.29550938365567	3.20741236378373	3.24293054026416	0.0663194760278089	0.918882622676013	0.981844538421417
Merged-chr9-100459091-1	chr9	100458591	100459591	+	820.0	f1_c57bl6.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	27382.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.60522025354266	5.8252013493193	5.52565043010435	5.12303765375031	4.94399169819897	5.445383871171	-0.965069023242129	0.00777541485793476	0.0843845988651409
Merged-chr7-43667239-5	chr7	43666771	43667771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAT)n|Simple_repeat|Simple_repeat	-4760.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	7.47840736415056	7.10031736638803	6.92928453629616	7.3100487881728	7.40048511868784	6.92778900309513	0.0582914990034368	0.837726397605035	0.96222208690411
Merged-chr1-156442288-4	chr1	156441769	156442769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 6 of 15)	intron (NM_009230, intron 6 of 15)	-21354.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	5.79574658235045	5.82457492345807	6.11386871643029	6.09542648416045	6.0929913855212	6.31129050036284	0.441881610225187	0.142248306991083	0.503517978819673
Merged-chr5-135169323-2	chr5	135168823	135169823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	PB1D7|SINE|Alu	951.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	7.08686397260984	7.45064164304738	7.25550545951004	7.39527885930081	7.75574787669339	7.28942227377566	0.33943178143011	0.199433694295665	0.587852167450271
Merged-chr16-93914449-4	chr16	93913989	93914989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15078.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	5.82774246837371	5.88734859013551	5.75620352518241	7.73112654576161	7.91019567155881	7.45330774062835	2.96198120032431	2.99414762683696e-26	6.07651306667927e-23
Merged-chr18-75895944-4	chr18	75895454	75896454	+	856.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	75776.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.10195729600787	2.90668502268642	2.93694295772529	3.13152711588452	2.98211033036334	3.07114544885889	0.339014700993075	0.614733183971104	0.887600696218698
Merged-chr2-158163248-4	chr2	158162757	158163757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-16865.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.1619687335359	4.92816944768349	4.71959500622541	5.42050135280858	5.84488693700186	5.38592571109388	1.233171887155	0.00167913340099952	0.0269905541595206
Merged-chr9-44735352-2	chr9	44734852	44735852	+	911.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153537)	promoter-TSS (NM_153537)	-154.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	3.96920800233828	3.74822330898309	3.72822403671252	3.49771368897765	3.55589139161232	3.52583454513484	-1.01736525574844	0.0684641532642923	0.34224006195436
Merged-chr15-81871527-1	chr15	81871027	81872027	+	607.0	f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	365.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	6.69295998397447	6.87918197228176	6.8888568128888	6.90892549394962	6.72884362855355	7.01448338347907	0.0941709714075794	0.714035305960037	0.92568727653408
Merged-chr7-25127946-2	chr7	25127446	25128446	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	4514.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	4.45095052038534	4.62845280978905	4.66851517849329	4.98982131431366	4.22033083824933	4.95129293219947	0.415078560390797	0.38835413500768	0.768214408180843
Merged-chr5-22549428-4	chr5	22548940	22549940	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	891.0	NM_011959	26429.0	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding	6.15937924811997	6.45796893879636	6.29802333951465	6.15198845984171	6.37030920092215	6.21598962316367	-0.0961858876921001	0.737081859739706	0.933504297835553
Merged-chr2-152802380-4	chr2	152801881	152802881	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	B2_Mm2|SINE|B2	26108.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	6.63040359634181	6.88519725490685	6.51143158974962	6.30360323048958	6.62031287259434	6.18842510825327	-0.471258036946392	0.11005065442241	0.443363350300229
Merged-chr16-27444149-2	chr16	27443649	27444649	+	686.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 8 of 9)	intron (NM_001025615, intron 8 of 9)	55193.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	3.2056755082937	3.33777119038683	3.1443823846488	3.36772638323284	3.16933282698678	3.44463908523967	0.363997523627664	0.5636459700659	0.865992481769395
Merged-chr7-141263910-2	chr7	141263410	141264410	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252600, exon 7 of 9)	exon (NM_001252600, exon 7 of 9)	2514.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	2.95173613415692	2.55346563222313	2.73872642458763	2.7771634309004	2.64126128289593	3.04941867807884	0.349042810999638	0.654553493225719	0.903872559164033
Merged-chr13-37855207-3	chr13	37854710	37855710	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	27817.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.29264624384713	6.51777746689524	6.49691770574851	6.64903061721748	6.92114811781294	6.04855526284957	0.266334366081908	0.419220699531269	0.788866040613588
Merged-chr13-59820340-4	chr13	59819841	59820841	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	2806.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.55946019604004	5.58770920731827	5.8325807039088	5.72233503506327	6.10358956081493	5.8202858717017	0.443360183646031	0.172949176958231	0.551687207865922
Merged-chr17-50189067-3	chr17	50188567	50189567	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	1430.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.6428754122793	3.61498241326474	3.30517167733489	3.51721843479708	3.36001472845251	3.43783712440077	-0.36605579595687	0.541303781836145	0.856797425729538
Merged-chr1-171852930-1	chr1	171852430	171853430	+	839.0	f1_balb.idr	3' UTR (NM_001252472, exon 3 of 3)	3' UTR (NM_001252472, exon 3 of 3)	13233.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.61505304931716	4.67520327450713	4.6773997656226	5.06312808172373	4.92106322942878	5.22385693894611	0.932882435311033	0.0174448207951625	0.147455165453462
Merged-chr11-16967966-4	chr11	16967423	16968423	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16513.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	2.98153899177961	2.96465260810927	3.27197726603515	2.95143871527467	2.71262708116508	3.54143136675688	0.164972299498955	0.831204336338829	0.960444904168444
Merged-chr6-134055698-2	chr6	134055198	134056198	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	19998.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.39605424331193	3.36171657552055	3.45470755213097	3.55058252068248	3.21707072788224	3.2998312866761	-0.154507723257139	0.799887023985031	0.952342612036603
Merged-chr15-76747568-2	chr15	76747068	76748068	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-23723.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	4.54008097872864	4.68855825820143	4.57674744930323	4.20465060620253	4.21537053614613	4.10075406838613	-1.11125746400969	0.0133194351626589	0.122665585059714
Merged-chr4-16089547-2	chr4	16089047	16090047	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74096.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.91058065813025	5.95177099565405	6.22855723415449	6.13595525594287	6.32065369267423	5.88653674025691	0.189413916750061	0.542116181811897	0.857034750433211
Merged-chr14-55727177-2	chr14	55726677	55727677	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4914.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	4.11376385158082	4.25843270114099	4.24939045913601	3.85997788400921	4.10113498579708	3.88501622599362	-0.70791472302267	0.155181716981525	0.524722054071794
Merged-chr4-109273888-2	chr4	109273388	109274388	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6387.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.82042704834651	3.88766275312084	3.93638707861701	3.59899790372599	3.59567196985031	3.35477496409997	-1.19611819598104	0.0367841292441725	0.236185957724293
Merged-chr17-35741439-2	chr17	35740939	35741939	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-31011.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.35442066034497	2.90189885514729	3.07333298542071	3.81924604912942	3.61590112887095	3.40290799354141	1.96830505186646	0.00553472437381975	0.065828094010405
Merged-chr8-122407837-4	chr8	122407361	122408361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 10 of 18)	intron (NM_001029993, intron 10 of 18)	-14159.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	5.74712988001015	5.64291105735014	5.58303947634658	5.31545834819548	5.12536363100163	5.41561735331551	-0.740632433671303	0.0275216878728736	0.197845557453629
Merged-chr6-35252184-2	chr6	35251684	35252684	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-515.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	3.58879988913506	3.29734246757315	3.47082317603542	3.38212919205591	3.23061394712457	3.4327505376252	-0.430183386639806	0.478337171150549	0.823759984020906
Merged-chr11-94069637-3	chr11	94069133	94070133	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 4 of 26)	intron (NM_001025428, intron 4 of 26)	25428.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	5.39253662446913	5.07066699291703	5.03970074524804	5.18607636082006	5.37299039995181	5.20986510130085	0.161498470060479	0.660278929725702	0.905906890165946
Merged-chr5-43236632-2	chr5	43236132	43237132	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 1 of 10)	intron (NM_001177379, intron 1 of 10)	-1278.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	3.53324340160263	3.64264943723115	3.46830745345205	3.64990795306518	3.72954032865409	3.65030409666047	0.435414785832254	0.43356603818946	0.797815674529737
Merged-chr8-111034482-2	chr8	111033982	111034982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 1 of 20)	B1F|SINE|Alu	640.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	7.69011768749983	7.85686361246489	7.18617610763104	7.7498917277357	7.84695601721507	7.25680243291561	0.0487816248177288	0.868522703063159	0.969652123135977
Merged-chr8-24438411-3	chr8	24437903	24438903	+	991.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	543.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	6.65971343141451	6.94835793407441	6.58978961304764	6.40389099216363	6.97441228977622	6.73175334207149	-0.0255996028979255	0.931137296217056	0.984775837432654
Merged-chr12-12263580-4	chr12	12263084	12264084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	1445.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.23230605186998	7.44115390841865	7.27242283867822	7.46271721629668	7.53926483341636	7.37503474694062	0.211716407028398	0.361700509011	0.747458707295016
Merged-chr7-99470277-2	chr7	99469777	99470777	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028145, exon 3 of 7)	exon (NM_028145, exon 3 of 7)	4273.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	5.01834648460956	5.11558196052134	5.19843675648951	5.30765929777695	5.51945347175833	5.32626513245162	0.58055511064263	0.0980679012949869	0.41742408696201
Merged-chr15-101173967-4	chr15	101173510	101174510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007395)	promoter-TSS (NM_007395)	-62.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	6.7195607202528	6.64130996016238	6.65209719515124	6.72425458166928	6.62591134866845	6.62810492070946	-0.0190657134678142	0.939843101539418	0.986738777817436
Merged-chr15-81046338-4	chr15	81045861	81046861	+	866.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	58686.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.26396816617099	6.03420525090918	6.15282525549334	6.07662859214725	5.91749931878082	6.31203077184714	-0.0909785429978407	0.761879430276503	0.941338831902106
Merged-chr4-132437882-2	chr4	132437382	132438382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15436.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	4.82683943740915	4.97869967692187	4.84952137193294	5.39109454407745	5.50566033197689	4.95676150793868	0.89384547054331	0.0213185714179993	0.168491232005023
Merged-chr4-101174553-4	chr4	101174057	101175057	+	779.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 9 of 24)	intron (NM_146145, intron 9 of 24)	90725.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.91172185786154	4.76188216260841	5.0535187783802	4.87539412012013	4.88391273168077	5.11715889053038	0.108596119715515	0.779337867117123	0.945710994231145
Merged-chr3-105712054-3	chr3	105711558	105712558	+	649.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	6600.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	2.65062439598311	2.54619150787551	2.5494143009207	2.61161081367208	2.66257148847931	2.80953147937996	0.61006822134111	0.421556555591938	1
Merged-chr7-80086525-2	chr7	80086025	80087025	+	701.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 4 of 6)	exon (NM_001146000, exon 4 of 6)	-11268.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.05820177994295	2.91922804627631	3.15308646056451	2.90350897390283	2.91603089449783	3.05444766818324	-0.404341680883829	0.551016649907816	0.860923422556561
Merged-chr12-32199611-4	chr12	32199123	32200123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 4 of 10)	intron (NM_020272, intron 4 of 10)	8715.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.00247138630875	5.02910134878992	5.19407343035041	5.12530491143605	5.03281715075323	4.70627335422877	-0.201701727837707	0.603005527844661	0.882484631305431
Merged-chr2-113848845-6	chr2	113848338	113849338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181416)	promoter-TSS (NM_181416)	-177.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	7.90451992908038	7.99378266014287	7.95248526706146	8.37214925843722	8.62288398056677	8.00854749439177	0.586415514725019	0.0166804512357914	0.143205425756059
Merged-chr4-95105548-2	chr4	95105048	95106048	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53326.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.61660998061503	3.35238307789008	3.41982213434443	3.55065422416537	3.42363505311418	3.4912350762734	0.0644256531908926	0.912511847404235	0.980364960151991
Merged-chr3-65952081-4	chr3	65951560	65952560	+	771.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	6189.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.41593897531693	5.26038065848435	5.89292716470603	5.69068321854779	5.77026035247267	6.17777863323278	0.64114087519287	0.0817700100844363	0.378285105145633
Merged-chr13-42301416-4	chr13	42300902	42301902	+	982.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010104)	promoter-TSS (NM_010104)	-74.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	3.56977092765992	3.31967844723832	3.705903742866	3.54117824527598	3.5314245659698	3.40295657103095	-0.139653295525989	0.813788221908265	0.955940138311315
Merged-chr17-43016519-4	chr17	43016029	43017029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178589)	promoter-TSS (NM_178589)	-26.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.40403284836004	6.63034934021187	6.31238345669896	6.16536640581099	6.29625319044538	6.04605446404468	-0.463119822331382	0.106943565125186	0.436454439973323
Merged-chr4-42987582-4	chr4	42987091	42988091	+	952.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 7 of 16)	RLTR12B|LTR|ERVK	12916.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	3.594434540918	3.56174807490176	3.73387953915636	3.84927948166171	3.83956205023434	3.90293959343294	0.785384958543545	0.138802687517178	0.497765344567168
Merged-chr12-79190980-4	chr12	79190506	79191506	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-45.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	4.98197316945105	4.93517993790768	4.95758501926188	4.89774469160664	4.58673548589482	4.95175413483629	-0.330692908711147	0.402724164094299	0.778213475289328
Merged-chr5-77194129-3	chr5	77193626	77194626	+	795.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17079.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.03498364241485	3.0696096155631	3.40985814602155	3.49161399171946	3.75094740452895	3.58850366221949	1.78407618242029	0.00565550286262836	0.0668346942470644
Merged-chr2-18816198-4	chr2	18815682	18816682	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14364.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	2.93540475383414	2.85711985163602	3.0312818950486	2.92878712664681	2.77490443186534	2.98717365311737	-0.218081711331084	0.753539587987329	0.938563718495545
Merged-chr10-118867386-3	chr10	118866867	118867867	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	1536.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.57233910033311	7.48879511974171	7.25125302148413	7.60739852364488	7.74576896347825	7.5195640871767	0.263566865692689	0.265564251108763	0.663336641638388
Merged-chr11-69095871-4	chr11	69095336	69096336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3113.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.83258515037743	8.9781830062401	8.67771797278498	8.55487710080145	8.94249322143901	8.69413246856839	-0.129224575561589	0.564014656533614	0.86613265061363
Merged-chr7-127270482-4	chr7	127270010	127271010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3549.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	5.02777019621126	5.30522243997185	5.40285989151191	4.87725054228148	4.62417308090849	4.9652091466389	-0.925484582004601	0.0183663760260944	0.152887757164333
Merged-chr11-97309534-4	chr11	97309022	97310022	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6194.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	6.77071973210985	6.68348283271534	6.5738729526439	5.52757938771662	5.35528477475354	5.10596214768909	-2.32126634309783	8.05463686165508e-13	1.55862842787115e-10
Merged-chr7-19821495-2	chr7	19820995	19821995	+	952.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	1260.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	4.40213768853352	4.33947759851736	4.46827342804487	4.99776557243774	4.65757234463815	4.74156994349014	0.980267167588455	0.0207933206722765	0.165645823503952
Merged-chr3-135691497-4	chr3	135690999	135691999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008689)	promoter-TSS (NM_008689)	48.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	8.09272281120805	7.90787280645114	7.66329599371608	7.95641199083362	7.56927988392584	7.8755065531323	-0.140659061150095	0.57248057737495	0.869840399318717
Merged-chr14-26765085-4	chr14	26764581	26765581	+	923.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-95235.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	3.03363896816582	3.18953357182033	3.13509353602047	3.03007170743855	2.92665058440626	2.96907442283258	-0.672350320171939	0.313083237861227	0.707746598467115
Merged-chr15-58135144-4	chr15	58134642	58135642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027435)	promoter-TSS (NM_027435)	-60.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	7.54189832796494	8.03369227487868	7.30317425295422	7.34292618160478	7.6238159989703	7.41750721060411	-0.294590751705126	0.29756999549163	0.694282707143749
Merged-chr10-8842984-3	chr10	8842488	8843488	+	937.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	43082.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.72437529900698	5.40435164439619	5.42509740643086	5.27147973283461	5.41489145166948	5.04762775566423	-0.514160079828403	0.15503058469513	0.524424135755442
Merged-chr3-130061361-2	chr3	130060861	130061861	+	767.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	-454.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	6.09186402151712	5.99927697853668	6.12164715728889	6.31987151532517	5.84288758860409	6.24347422406521	0.126182978603733	0.683121013110548	0.91523316791368
Merged-chr11-34737417-4	chr11	34736908	34737908	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 2 of 51)	L1M3|LINE|L1	46497.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	3.83986920854643	3.81004331918677	3.74622990595052	3.79240092955269	3.68106517019443	3.71066573267472	-0.243898178728547	0.643197040017359	0.899675830462702
Merged-chr2-167764153-2	chr2	167763653	167764653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72976.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.86563530193455	6.2140987035185	6.15226445457361	6.11767542016727	6.34083340355654	6.05931081812072	0.17434711450153	0.56462917948791	0.86651662271215
Merged-chr4-150015592-2	chr4	150015087	150016087	+	694.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6564.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	3.39927084741662	3.2014992188865	3.31780367685206	3.12140201014195	3.43610274787381	3.59974766994497	0.344673926515555	0.587961389361495	0.876182349656829
Merged-chr2-181659366-4	chr2	181658886	181659886	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12254.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	3.26231740272369	3.32504417286019	3.36248802769154	3.14648131948088	3.06213964862129	3.02606530661942	-1.01237190863932	0.115307261440523	0.453392803340158
Merged-chr4-154864407-4	chr4	154863902	154864902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154548, exon 5 of 5)	non-coding (NR_154548, exon 5 of 5)	-5183.0	NM_013783	27390.0	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	4.00663819746	3.82129267721756	3.90617848526767	3.81429469384247	3.64747843004006	3.87659969858403	-0.441055878064095	0.399336602451806	0.775775529529442
Merged-chr12-104131253-4	chr12	104130763	104131763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3267.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	3.48896909331299	3.32233297379794	3.38765356333028	3.65662011617264	3.35049948747093	3.40248544936304	0.278814916407702	0.641591552700441	0.899095902698814
Merged-chr6-71823746-4	chr6	71823253	71824253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025430)	promoter-TSS (NM_025430)	31.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	4.81030241345985	4.76630277668803	4.74468671405734	5.38657685174978	5.39040667918066	4.77072828200794	0.963335996067458	0.0182073045945269	0.15204670821973
Merged-chr15-4821317-4	chr15	4820786	4821786	+	814.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-77451.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	4.64238753721546	4.07872865109911	4.47787914698917	4.35241689180829	4.48568202919646	4.46087190637614	0.0363680960993078	0.938701493670165	0.986515091506254
Merged-chr17-43576534-4	chr17	43576036	43577036	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	8085.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	5.57063859006786	5.6270642299129	5.73797755650392	5.08505049401575	5.13367970231047	5.45796584149641	-0.816544816454905	0.0181738953300232	0.151889662778281
Merged-chr17-28800883-4	chr17	28800310	28801310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081315)	promoter-TSS (NM_001081315)	-316.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	6.07559195854168	5.90207151496895	6.34441330116547	6.10148358341787	5.40206160209276	5.73423214596043	-0.591195502761977	0.097778168389701	0.417013113037942
Merged-chr5-29972964-4	chr5	29972470	29973470	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40144.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	3.711096420166	3.69801869188144	3.63441719148809	3.94229864113063	4.15668552118951	3.86911965649609	1.01251935309726	0.0550129382258426	0.30139034526573
Merged-chr10-19592796-2	chr10	19592296	19593296	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	847.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	7.93726112078424	8.19656548377031	7.62378242986518	8.11693105935738	8.21470917461138	8.00752905225247	0.239605871270613	0.33279631572193	0.723870610962255
Merged-chr2-25256905-4	chr2	25256358	25257358	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177344)	TTS (NM_177344)	1419.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	4.47877889786964	4.57044865748707	4.15174662806272	4.34862889403136	4.40873270474332	4.49807054785616	-0.0179703632027511	0.968564399895518	0.992811398801848
Merged-chr11-20631909-4	chr11	20631377	20632377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-100.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	8.35617925031566	8.607663365563	8.29485476322707	8.2793276904402	8.53237400638733	8.26195073689331	-0.0865510844635048	0.70038370053175	0.920919335036368
Merged-chr10-128298961-4	chr10	128298460	128299460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-876.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	7.89842517548389	7.8369304745767	7.73624277927753	8.05456142238491	8.30613348626901	7.91121478358829	0.397964355247661	0.0833402089610613	0.382027991804318
Merged-chr6-119472398-3	chr6	119471894	119472894	+	611.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5183.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	4.05107511469655	3.74022323515538	4.19938422029959	4.01723726877861	3.70676204388295	3.94816433339323	-0.337986991210257	0.528568725863502	0.850585575598857
Merged-chr19-55774589-3	chr19	55774098	55775098	+	818.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	32788.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.7259150330184	5.54004906046004	5.30430049397264	5.81808848657512	5.79380093380485	5.6185360525761	0.377711403650595	0.257486546223755	0.654816483944688
Merged-chr11-54860713-4	chr11	54860197	54861197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029327)	promoter-TSS (NM_029327)	-106.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	7.16693812014338	7.30284012112301	6.9421138711589	7.0558357330819	7.29904780857875	6.88143758407632	-0.0789223902735883	0.765953176334672	0.942315542034148
Merged-chr5-90900386-4	chr5	90899874	90900874	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3525.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	5.07394257201795	4.75757486697486	4.66726795044165	4.67356973022783	4.33808101533412	4.77334580125689	-0.593398447637706	0.17460507390081	0.553890163520344
Merged-chr17-26663108-4	chr17	26662591	26663591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13305.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	6.59333172131935	6.73493935830223	6.68430018730732	6.6709033960958	6.82754590444326	6.72715701670425	0.118019063793305	0.642231984381091	0.899386353339647
Merged-chr10-79857697-4	chr10	79857260	79858260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-2789.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	6.51537036355004	6.45711615800093	6.66164159400783	6.67937789744663	6.48270261789496	6.62367684872835	0.0843001960333458	0.749626459242492	0.937447110940518
Merged-chr5-91000133-4	chr5	90999621	91000621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	-27396.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	4.6840260335732	4.56998507818352	4.80962185116399	4.35398024793631	4.40418204485339	5.00653655487385	-0.181387800417937	0.694180154291931	0.919202859234248
Merged-chr3-97238683-4	chr3	97238175	97239175	+	951.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11311.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	3.62663195270106	3.40445629279968	3.56529421314717	3.52344923128749	3.70085717569618	3.73907561780122	0.431440428384414	0.445626262573141	0.805296706011004
Merged-chr5-137825271-4	chr5	137824757	137825757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	11021.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	5.33489257418839	5.24743001523159	5.18517677621846	5.10267942644466	5.32189916672031	5.14780570574295	-0.119955900298565	0.734903216342685	0.932617455907478
Merged-chr1-60960719-4	chr1	60960231	60961231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17183.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.10765195592454	5.16473267375237	5.5168819197233	5.2275998779387	5.22237371691668	5.52547276538524	0.120530751746114	0.743162988464967	0.935528839299546
Merged-chr16-43966504-2	chr16	43966004	43967004	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12546.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	5.75243778596493	5.88048788045931	5.70853978016305	5.41010927359632	5.49307099235119	5.77027034125531	-0.424839382967705	0.190864218088904	0.577428967011753
Merged-chr15-62104800-4	chr15	62104297	62105297	+	976.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	65540.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.25077658711757	4.14513248712427	4.24180039304484	3.85051413486907	3.8708743268024	4.03521193741503	-0.875096422033861	0.0730891020089295	0.355275032127527
Merged-chr10-42762334-4	chr10	42761825	42762825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	829.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	7.66266395509312	7.72011405329716	7.6292072780312	7.48721155606012	7.46021153536388	7.64004342764198	-0.212794606125771	0.336266577691212	0.726311051846196
Merged-chr19-6857486-4	chr19	6856955	6857955	+	866.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 3 of 27)	exon (NM_001081291, exon 3 of 27)	756.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	6.523735539928	6.00235378255101	6.42492925149326	7.05030865779268	6.60459812105985	6.59207350021553	0.695488585221527	0.025864198812891	0.190667476574426
Merged-chr1-156681393-1	chr1	156680893	156681893	+	1000.0	f1_c57bl6.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-7054.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	6.75756767275171	6.59883846393909	6.65005501969918	5.96976530105436	5.75096842276888	5.92427723289299	-1.32520584728858	2.34900900608631e-06	0.000115155317103019
Merged-chr2-147014431-3	chr2	147013921	147014921	+	693.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	B1_Mur1|SINE|Alu	1422.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	5.56104634325466	5.55098455009934	5.60947447294204	5.71652036955645	6.02455118758492	5.64427064276287	0.452746946025087	0.162749297306039	0.536188662408322
Merged-chr10-56163171-3	chr10	56162662	56163662	+	646.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033385, intron 15 of 32)	intron (NM_001033385, intron 15 of 32)	56245.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	2.58816521037664	2.79822435695395	2.8190174784282	2.6427657430336	2.78570469444805	2.77066326472252	-0.0106042170547337	0.988618477845248	0.997426973334006
Merged-chr7-126746275-4	chr7	126745763	126746763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-13363.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	7.55576462666406	7.44876713639787	7.58073122093889	7.39096649716888	7.81704977033838	7.59011417781048	0.130068652707995	0.590421676346233	0.877218317361274
Merged-chr17-86978670-4	chr17	86978181	86979181	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	ORR1A4|LTR|ERVL-MaLR	15570.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.70483533107747	4.48207359409842	4.96488826421059	4.62445883298785	4.5709960504893	4.71065308394704	-0.20896446262675	0.62374741121434	0.891566739256228
Merged-chr12-84614739-4	chr12	84614229	84615229	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	2737.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	7.25355371320596	7.60255233508742	7.40114978620677	7.03780727929737	7.25475323010983	6.65688036991403	-0.609543028773011	0.0295158636467541	0.206660718808408
Merged-chr12-100022250-4	chr12	100021752	100022752	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ID2|SINE|ID	57753.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.06458416234555	5.99963802260805	5.91526641200976	5.531256842676	5.54666273042188	5.72805526437097	-0.723866218470377	0.0182059389078328	0.15204670821973
Merged-chr11-60333338-3	chr11	60332855	60333855	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	19550.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	2.47965523079582	2.37149049590108	2.86031397376528	2.29385865928385	2.48403215048697	2.58346983829086	-0.727743549714569	0.396752907871085	1
Merged-chr1-166340862-2	chr1	166340362	166341362	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38305.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	2.47503602897095	2.47386821435239	2.47160118027941	2.625615004491	2.56515970322414	2.6720486849534	0.865967795626149	0.264090584906829	1
Merged-chr17-71529199-3	chr17	71528689	71529689	+	821.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2332.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	3.67609088694368	3.68653022541696	4.29855269218554	4.25236462676563	4.7148599880909	4.60537826541196	1.75766691887065	0.00135905141426167	0.0229193251069893
Merged-chr12-70969960-4	chr12	70969461	70970461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4662.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	6.75294242642692	6.97491884972106	6.49385114993786	6.9732072067199	7.43811559400655	6.7170121895412	0.500496422771399	0.107780045449772	0.438558498615326
Merged-chr9-114730342-4	chr9	114729823	114730823	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-880.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	5.31431187532581	5.61255454416091	5.10698442302228	5.51174266633514	5.70700213869957	5.56225520429675	0.427871013323637	0.230063227866296	0.625817164441292
Merged-chr2-52940158-2	chr2	52939632	52940632	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	82264.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.97259974284868	4.38473348255773	4.63910853499509	4.63703117513562	4.54768515704864	4.44919482016104	-0.340873183940497	0.450098306864364	0.808125753443164
Merged-chr4-95303517-4	chr4	95303010	95304010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251288.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.72622855130433	5.18942293091336	4.94264940735605	5.40675227898377	5.12373184578609	5.6907023474331	0.908315775071258	0.0249772157087795	0.186874424221059
Merged-chr1-153969361-3	chr1	153968864	153969864	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	69435.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	2.64597165667949	2.36724614092865	2.63869258357843	2.66393032599943	2.52046193075089	2.71233062287846	0.43485287231629	0.584405454439898	1
Merged-chr14-75185980-4	chr14	75185504	75186504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	49579.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.62236870328977	6.35092109220241	6.58936272017855	6.78582252707084	6.69595553065562	6.74485941085788	0.346820860052034	0.186969975359082	0.571837010574083
Merged-chr17-78917356-1	chr17	78916856	78917856	+	554.0	f1_balb.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	857.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	5.88756957715695	6.26911801143869	6.58999541964713	6.42667053723349	6.94117334989897	6.46064460859094	0.595460422333609	0.075015130740225	0.360571832859606
Merged-chr5-103691712-4	chr5	103691207	103692207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35975.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	6.61193278690294	6.72157821162862	6.72978083932827	6.93032920248442	7.26976609815654	6.92370077171337	0.577224179987628	0.0269629121029224	0.19557151161254
Merged-chr13-23581028-2	chr13	23580528	23581528	+	988.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-574.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	5.0038026455827	5.01482747565443	4.70905601102638	4.92925830114563	5.11685820535652	5.1473573081132	0.298892394877864	0.438039935121704	0.800392257304524
Merged-chr12-34779529-3	chr12	34779038	34780038	+	771.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	137557.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.1333709039015	5.24542610794273	5.06061208595985	4.87582739515724	5.36313102278926	5.05453173498358	-0.0544380252149134	0.887864062650442	0.973903435741171
Merged-chr15-58933293-4	chr15	58932805	58933805	+	873.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023172)	promoter-TSS (NM_023172)	425.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	7.83481943242739	7.96688796058303	7.71903845517308	7.78459830633053	7.85291337407721	7.60735473127625	-0.130024215683175	0.565301494031586	0.866599059240356
Merged-chr11-118354361-2	chr11	118353861	118354861	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1050.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.76330909808317	5.89562218678555	6.0712927050984	5.21163696905283	5.5490744448297	5.37381750348282	-0.953640123834943	0.00483195890158474	0.0597970590254548
Merged-chr1-52500027-4	chr1	52499524	52500524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008667, intron 1 of 7)	intron (NM_008667, intron 1 of 7)	424.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	7.10367153462112	6.38255421621288	6.6829172233092	7.07584374025333	6.24762163125452	6.72598043028466	-0.0529483302675014	0.880267312049107	0.972493267651278
Merged-chr17-83215139-4	chr17	83214635	83215635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-148.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.673720424782	6.76735562650098	6.8471108558761	7.00262165386143	6.71677774051653	6.89109470543892	0.172076539842299	0.502475536741245	0.836517565898352
Merged-chr11-98774869-1	chr11	98774369	98775369	+	1000.0	f0_c57.idr	5' UTR (NM_145434, exon 1 of 8)	5' UTR (NM_145434, exon 1 of 8)	508.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	9.32569539487497	9.33033748111781	8.96546126549848	8.97047287072818	9.51831506567563	8.95807740738334	-0.0520329215414205	0.837367907642251	0.962133986386607
Merged-chr9-89200047-1	chr9	89199547	89200547	+	646.0	f0_balb.idr	intron (NM_007534, intron 1 of 1)	B2_Mm2|SINE|B2	774.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	6.78927528762597	6.77233817525725	6.37942700880246	6.83045808922254	6.92450131383887	6.53691120684477	0.175823180860413	0.535857855643299	0.853668337370661
Merged-chr1-131698968-4	chr1	131698482	131699482	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	10287.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	4.88720429128631	5.02087850099846	5.03134858560928	5.79760249487886	5.71831218446342	5.57799309198619	1.43689668481631	2.89567544333076e-05	0.000998935996221665
Merged-chr11-61934818-3	chr11	61934325	61935325	+	975.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-4568.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	4.39323566648779	3.97222820077502	4.16968935582445	3.89996030335983	3.79269853543863	4.28089913965645	-0.556817921901658	0.290767926273102	0.688568107958343
Merged-chr13-75994529-1	chr13	75994029	75995029	+	675.0	f1_c57bl6.idr	intron (NM_029343, intron 4 of 4)	intron (NM_029343, intron 4 of 4)	24033.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	2.07354711348451	2.14302842267548	1.94285803902409	2.16406071092632	2.04247975582781	2.29040639515819	0.793342002386751	0.400448999754556	1
Merged-chr13-9160609-2	chr13	9160109	9161109	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	B4|SINE|B4	66728.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	2.77609405908718	2.72430494547402	2.85403284595517	2.51318997074545	2.40859115414135	2.55755820417316	-1.78162050816465	0.0269659733871678	1
Merged-chr7-143784222-1	chr7	143783722	143784722	+	677.5	f0_balb.idr	5' UTR (NM_175534, exon 1 of 2)	5' UTR (NM_175534, exon 1 of 2)	278.0	NM_175534	244238.0	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	2.60867387296057	2.65411808841683	2.69463334208803	2.36220970590886	2.48828060516488	2.70715378397939	-0.750817111723594	0.349507798232139	1
Merged-chr12-105646110-1	chr12	105645610	105646610	+	541.0	f1_balb.idr	intron (NM_029654, intron 23 of 41)	intron (NM_029654, intron 23 of 41)	39131.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	1.97579555726267	2.17011138498539	2.30115407051809	1.91161793319611	1.77668700766812	1.84055231121645	-3.02131796709756	0.00978263730702477	1
Merged-chr19-6058432-2	chr19	6057932	6058932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026246)	promoter-TSS (NM_026246)	465.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	8.09030034881484	8.32941393259719	7.73837972455909	7.80648683637305	8.00251881612821	8.15039773087027	-0.128780217968414	0.614203317287492	0.887421941740887
Merged-chr18-67933194-4	chr18	67932664	67933664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172631)	promoter-TSS (NM_172631)	-9.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.82922789616541	5.35937673986037	5.39813190143275	4.86337158975041	4.52857311188184	4.71222015275797	-1.79811460670821	6.95784397015382e-06	0.000294031630811864
Merged-chr15-73148919-4	chr15	73148416	73149416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36031.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	6.5374020486461	6.29034287697896	5.964841297013	6.40074399716279	6.81540221111634	6.16688545053281	0.345746446446021	0.303466944249404	0.700032643871931
Merged-chr8-36094951-5	chr8	36094418	36095418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	90.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	5.26402340049825	5.15930735913163	4.75522203267884	4.6044565231563	4.55341871055814	4.41978808767873	-1.26367118595994	0.00276707450362106	0.0396014336596666
Merged-chr17-23790070-2	chr17	23789602	23790602	+	978.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3886.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	4.70028084670453	4.70182489213671	4.5969774194125	5.2898796783936	5.19426087245189	5.25541102548199	1.24568086845138	0.000994513634291519	0.017938757962742
Merged-chr11-97704383-2	chr11	97703883	97704883	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	intron (NM_011971, intron 2 of 5)	949.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	4.75482465933378	4.43912345669722	4.68539694976221	4.27151434392515	4.23954131190207	4.59771742611259	-0.660618575623991	0.142327419712206	0.503690878675282
Merged-chr11-88968721-1	chr11	88968221	88969221	+	719.0	f1_c57bl6.idr	Intergenic	RMER16B2|LTR|ERVK	-1790.0	NM_001360780	217066.0	Mm.347543	NM_001025564	ENSMUSG00000057534	Elobl	Gm15698|Tceb2l	elongin B-like	protein-coding	2.96277572811355	3.0402038337643	3.06795175504993	3.39512182707743	3.81704324749077	3.89452353172942	2.95931331703758	2.85766473183788e-05	0.000987050921572297
Merged-chr11-51608330-2	chr11	51607830	51608830	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1449.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	3.57674283026652	3.73050433840081	3.82837942050244	3.73118629009317	3.60237954139985	3.58890943199732	-0.233844649511194	0.670445132118252	0.910029595108128
Merged-chr17-45629292-3	chr17	45628795	45629795	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013767)	TTS (NM_001013767)	-27193.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	3.45119953729743	3.30295513171234	3.79593011040808	3.49399593810641	3.18016220877727	3.77143372922443	-0.102923941783239	0.873789586288344	0.970465221050476
Merged-chr10-94082491-4	chr10	94081984	94082984	+	917.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 3 of 20)	LTR48|LTR|ERV1	46483.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.02987129464031	3.18346149530813	3.11273340867404	3.57746653856253	3.49662436075888	3.5328775650366	1.73410222381144	0.00615648148676001	0.071059579907106
Merged-chr9-106367183-4	chr9	106366701	106367701	+	924.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.91851393524582	6.10807714457512	6.20237979843267	6.07073863802128	6.37577713862841	6.20117698707337	0.258263966164774	0.382314479001439	0.763903231068644
Merged-chr5-25499114-4	chr5	25498634	25499634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-351.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	8.27555174336269	8.74249543324973	8.32230618788611	8.2243987607107	8.48139316059169	8.35380479224655	-0.153009208637631	0.522920978481196	0.847857689695111
Merged-chr2-52084354-2	chr2	52083854	52084854	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355414, intron 9 of 35)	intron (NM_001355414, intron 9 of 35)	11517.0	NM_175238	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	2.99554027707789	3.0651549061378	3.12253472454511	3.45387359496605	3.70100349243767	3.69530424228607	2.35993940122695	0.000323874001490428	0.0074198535011056
Merged-chr8-120576494-3	chr8	120575987	120576987	+	743.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198671, exon 14 of 16)	exon (NM_198671, exon 14 of 16)	12588.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	4.30090241851169	4.27383761745559	4.50382856793779	3.98809427631629	4.26970307132906	4.32371168208014	-0.418616248378405	0.374740163134223	0.758118627242714
Merged-chr3-88627154-2	chr3	88626654	88627654	+	691.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	5760.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.34537277870168	5.17796360351444	5.69513072048846	5.3018520882214	5.46215963491124	5.68255841068803	0.142986752144257	0.695034475899262	0.919230570201314
Merged-chr3-96161651-2	chr3	96161151	96162151	+	855.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181409)	promoter-TSS (NM_181409)	-319.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	4.79980045240703	4.80535978881879	5.09641955475455	4.20176933159737	4.74596050502576	4.50376468435987	-0.903802175739256	0.047480781640563	0.276036740310986
Merged-chr1-153900754-2	chr1	153900254	153901254	+	984.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106194)	TTS (NR_106194)	825.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.94017045548087	6.83776615732941	7.03447930447098	7.00814883861626	7.17814408237565	6.95758481095591	0.187804907477266	0.446761153265985	0.806122541261987
Merged-chr1-173739712-4	chr1	173739223	173740223	+	745.041687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2086.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.379772263495	7.77340206071201	6.93720171332899	7.20188173368785	7.61979835229651	7.09662162049569	-0.123877666825266	0.693037158761273	0.918822848593753
Merged-chr7-29229432-6	chr7	29228993	29229993	+	880.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	3029.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	5.6504830121857	5.68295876972905	5.93787491548493	6.08661939142526	6.17742328563769	5.82824176999306	0.522628491024	0.0945755221932409	0.409952075987455
Merged-chr3-107895840-4	chr3	107895358	107896358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010360)	promoter-TSS (NM_010360)	4.0	NM_010360	14866.0	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	4.90145683124474	4.84262327330513	4.3961807867511	4.22226139063419	3.88772944382692	4.27804948763485	-1.59412341835881	0.00100043158274271	0.0180220634632725
Merged-chr3-144569757-3	chr3	144569211	144570211	+	949.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	505.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	6.65541250133891	6.55939591974835	6.12687552205165	6.61207645256807	6.51589111117005	6.34099588483799	0.030615342749716	0.917466555985057	0.981619611552072
Merged-chr11-5542883-4	chr11	5542371	5543371	+	929.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-654.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	5.50353304005224	5.22523786915989	5.31111762116437	5.76703108723339	6.19765169071237	5.50532941649377	0.95813132584555	0.00870994990915495	0.0914957091328071
Merged-chr17-67405797-4	chr17	67405293	67406293	+	821.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51302.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.28121438515087	3.08471657646083	3.15931861341734	3.19072400959816	2.82019344173022	3.34281674967479	-0.198337379299726	0.776769180338205	0.944892922631445
Merged-chr8-80808332-3	chr8	80807829	80808829	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-68870.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	2.37502635269244	2.638341708386	2.59345327489548	2.37424046845316	2.4246425167512	2.41225781785164	-0.835885584319149	0.308776364388115	1
Merged-chr4-133918594-3	chr4	133918103	133919103	+	739.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10-int|LTR|ERVK	-30806.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.98191969834748	2.8995908659178	3.28810092328576	4.06084262609348	3.7976964928593	4.40972112230361	5.0516119952122	1.32359723886759e-07	9.15390604925173e-06
Merged-chr5-141082356-2	chr5	141081856	141082856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81760.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	4.94615596103229	4.59741549509599	4.77131426275276	4.86049892206784	4.97714932808086	4.75856641366168	0.215081302112803	0.594137984574021	0.878842878041553
Merged-chr7-19318325-2	chr7	19317825	19318825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.89529790340555	5.62048376678639	5.47969265893587	5.7963450900687	5.6535415735177	5.86841059441492	0.150213731102265	0.647666590923014	0.901510214793849
Merged-chr3-90081666-5	chr3	90081135	90082135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	2114.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	6.67034035979948	6.41590137910936	6.54398603522801	6.57052044056528	7.10216027731918	6.84308081079564	0.497348629660085	0.0813451413004283	0.377326784876719
Merged-chr5-65254090-2	chr5	65253590	65254590	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359879, intron 31 of 35)	intron (NM_001359879, intron 31 of 35)	54394.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	2.4239158795434	2.2788275266618	2.7128703297354	2.57327562129144	2.55651309047166	2.66603005117482	0.696971613168683	0.401220556247612	1
Merged-chr3-88685399-4	chr3	88684891	88685891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-396.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	7.60774389400038	7.71143001202763	7.70047957935976	7.52187583293208	8.10904011053923	7.60918798492475	0.159340968364346	0.541366166396393	0.856830803260814
Merged-chr7-97794553-1	chr7	97794053	97795053	+	544.0	f1_balb.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	6012.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.89811902266458	4.91854962923029	4.86320424755181	4.7572834984153	5.04436825926725	4.96490134819719	0.0806690415076291	0.833967130231737	0.961144865125382
Merged-chr11-69752253-2	chr11	69751753	69752753	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	6380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	3.20860568619417	2.97948489585844	3.0509882442066	3.11918660435573	3.26290389569801	3.35257033716405	0.688097956519191	0.292104851837459	0.689330051945222
Merged-chr15-97312086-4	chr15	97311593	97312593	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-64806.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.37226821515247	3.55654022386722	3.39960712074999	3.14314901304592	3.14221808251839	3.24400309546124	-1.12391944530623	0.0711087519406891	0.349821902773212
Merged-chr17-34306593-4	chr17	34306085	34307085	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	718.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	6.66833399382434	6.73950944309211	6.49216655689923	7.34691616385485	7.67007251626538	7.02621175903233	1.12621334322018	6.62239262214175e-05	0.00199578430026501
Merged-chr15-98934548-4	chr15	98934052	98935052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011654)	promoter-TSS (NM_011654)	-162.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	6.63380406637415	6.20055875364743	6.63004086072697	6.58930420576408	6.50941968610666	6.85251164140739	0.24329520350985	0.406080111442933	0.780529555167911
Merged-chr10-51531037-4	chr10	51530548	51531548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS3|LTR|ERV1	40150.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	7.03829663857366	7.34629214571965	7.15468146189515	7.13381707155956	7.44425998597668	7.21231744224901	0.131065655634034	0.603785750035732	0.882837513989345
Merged-chr17-7887147-3	chr17	7886586	7887586	+	869.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38914.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	4.34611929256187	4.70728941381186	4.76269844998814	4.50702138897677	4.81672926724791	4.59430553346391	0.0956052285520398	0.82796889816581	0.959601583399458
Merged-chr12-55467049-4	chr12	55466564	55467564	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25583.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.22235093636836	4.3911358896489	4.21123685419968	4.20093810141312	3.69763807787527	3.7679452592896	-1.0733949558582	0.0431363845028347	0.260565682882894
Merged-chr12-70999750-4	chr12	70999249	71000249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	16074.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	6.20137273790225	6.43720644552586	6.37229950212938	6.71685350824	7.082415107953	6.74523433799907	0.83895339879645	0.00252751877005769	0.0370524633225793
Merged-chr11-32625868-1	chr11	32625368	32626368	+	579.0	f0_c57.idr	Intergenic	Intergenic	-16687.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.40871921027006	2.37055669740908	2.25875616881902	2.39771115310942	2.26894217907124	2.5884877637316	0.448381596894653	0.596999807816097	1
Merged-chr7-110557191-4	chr7	110556697	110557697	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	57723.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	4.41925181526352	4.46348581423655	4.74346877351342	4.25892724112224	4.31774224153688	4.66317737211028	-0.317366501275883	0.485092812885089	0.827336504644498
Merged-chr15-102421668-2	chr15	102421168	102422168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 3 of 5)	intron (NM_013672, intron 3 of 5)	15352.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	2.64391563041055	2.70383140575426	2.71799721149092	2.84401184053677	2.62541794172309	3.02340051154047	0.77336885604846	0.302666398371328	0.699290988939897
Merged-chr19-41325216-2	chr19	41324716	41325716	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	B3|SINE|B2	59854.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.31866546225609	4.50252376059621	4.77368196245333	4.62263842231851	4.35532352917329	4.90630041771085	0.242124482233094	0.600171720510682	0.881490627508743
Merged-chr5-21379115-3	chr5	21378600	21379600	+	731.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008013)	TTS (NM_008013)	6427.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.57015291785829	3.56414276575281	3.7075029419074	4.03558109908736	3.66585043557635	3.7255506635526	0.694070907477585	0.209755870523171	0.601570989687028
Merged-chr19-37963904-2	chr19	37963412	37964412	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79665.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.74956196616318	6.73663755580147	6.8641169537847	6.80997464947332	6.8333970285692	6.94993712759104	0.127272872305987	0.607086291952296	0.884448083779426
Merged-chr1-85245051-1	chr1	85244551	85245551	+	747.5	f1_balb.idr	Intergenic	Intergenic	25515.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.27721972014985	2.37461543683231	2.46122919175515	2.17993375147951	2.03044221890897	2.53522630630571	-0.707309323314648	0.45226786771104	1
Merged-chr2-14234211-4	chr2	14233719	14234719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	LTR16C|LTR|ERVL	4805.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.38069062824119	6.35707587241338	6.32733467709101	6.59188505934032	6.62409332100767	6.05705723645287	0.175098379265234	0.55786133024483	0.864420670161676
Merged-chr2-45280532-4	chr2	45280033	45281033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163091.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.39307505719981	6.67041401466079	6.37960870468276	6.54369857320838	6.37921278666104	6.17042724767916	-0.187013939597965	0.515444124973967	0.843675244921588
Merged-chr10-121454270-3	chr10	121453780	121454780	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	21970.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.07778770371897	3.75412533161919	3.53567836222373	3.27355091299757	3.25305429647511	3.43462873460071	-1.85384382400533	0.0028834401764902	0.0408383472690037
Merged-chr19-45652164-2	chr19	45651664	45652664	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8029.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.85533861162147	5.65324653821077	5.43307680336179	5.41195085774438	5.88365884377416	5.52780784108231	-0.0573665272507314	0.871446317996181	0.970222087171093
Merged-chr1-91412649-2	chr1	91412149	91413149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360900, intron 3 of 3)	CpG	573.0	NM_019479	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	5.17839533218677	5.39046301897854	5.22580902584755	5.20418424757113	4.76819894941716	4.9800827552832	-0.582981655832347	0.125978451404976	0.474743679619431
Merged-chr11-117076807-4	chr11	117076302	117077302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027059)	promoter-TSS (NR_027059)	19.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	6.69800361889527	6.87268186536659	6.90602693095092	6.92853495164171	6.79523897478776	6.53292046767378	-0.0864657083552656	0.744968745900756	0.936032341688524
Merged-chr5-139775735-4	chr5	139775244	139776244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	-66.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	5.66916907916657	5.79016671982854	5.6400304578767	5.44275869499565	5.16756473035552	5.18008338852713	-0.83460963325234	0.0134437964535842	0.123414763383697
Merged-chr16-33911302-2	chr16	33910802	33911802	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	B1_Mus1|SINE|Alu	55736.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.790537315509	3.7713333724301	4.150256880205	3.87019176523896	3.77191904773785	3.89873450483261	-0.190193697394181	0.718964802987294	0.927633547003347
Merged-chr11-100730676-4	chr11	100730177	100731177	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7538.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	5.25628880860825	5.00969938760236	4.90928444404723	5.17879491024271	5.22164153109441	5.1218054403025	0.213367983674867	0.563906273546367	0.866014520598636
Merged-chr1-144308474-4	chr1	144307993	144308993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59389.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.5258513817636	5.44253166128971	5.4013239199868	5.25560189415831	5.32085420404829	5.40428720841415	-0.266151460788223	0.426156108871792	0.793675419643125
Merged-chr14-103346036-3	chr14	103345537	103346537	+	849.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	(CA)n|Simple_repeat|Simple_repeat	763.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	6.76138875685292	6.55351168188382	6.48011367102665	6.92601100925167	6.85921969253857	6.69736498270768	0.353725639627207	0.178685163911585	0.560022415863315
Merged-chr10-98608237-2	chr10	98607737	98608737	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256370.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.6795452768779	4.96279186731347	4.78134823286726	4.84544707422668	5.09941846653095	4.64135584956664	0.16388905527814	0.692713228251025	0.91870248759071
Merged-chr16-36670495-2	chr16	36669995	36670995	+	836.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4418.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.58931187935497	4.97654477706706	5.12778539037246	5.45158675734394	5.0880299425745	5.61192217810284	0.253329525907454	0.532535787987228	0.851971173271146
Merged-chr12-98320210-4	chr12	98319686	98320686	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51551.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.81781591990131	4.98094418494568	5.3483989616612	4.79397540122103	4.91866402134976	5.32673579063975	-0.0725153795424604	0.862198103593962	0.967996224966109
Merged-chr15-103510986-2	chr15	103510486	103511486	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3860.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.17274784556164	2.99099883727658	3.53440633742772	3.29315050082316	3.19208600445168	3.50383875402455	0.343192337311138	0.60747415873956	0.884581207370863
Merged-chr10-80755083-4	chr10	80754580	80755580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199322)	promoter-TSS (NM_199322)	-123.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	7.48003560603755	6.81493081789846	7.14696221757234	7.5135789001344	7.55191843394291	7.32423068719013	0.431065621935916	0.122139022887409	0.467476716486454
Merged-chr18-50128234-4	chr18	50127718	50128718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008292)	promoter-TSS (NM_008292)	17.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	6.82938127193263	7.13752297400683	6.79424519064513	6.85893149565291	6.95769114317019	6.88287368433358	-0.0531221645903326	0.836908344859223	0.962002950199567
Merged-chr7-43921294-4	chr7	43920794	43921794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12477.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	7.06437170319606	7.14869534597879	7.14893157734335	7.02689284415047	7.04928428554734	6.98671296371892	-0.146839228387754	0.532323377473054	0.851971173271146
Merged-chr5-125380082-3	chr5	125379600	125380600	+	980.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9917.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.2387103390049	3.09749963904999	3.38935834971026	3.02903670255292	2.9810700614858	3.24570188556188	-0.686387466105133	0.298267639592621	0.69500092474273
Merged-chr7-125472126-4	chr7	125471631	125472631	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026330, exon 3 of 8)	exon (NM_026330, exon 3 of 8)	19411.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	4.76741484467267	5.13739904080026	5.19549542593622	5.26536028325515	5.03993093089234	5.3497486200351	0.364385971834694	0.345285352943575	0.733669653925664
Merged-chr3-122274962-2	chr3	122274461	122275461	+	650.5	f0_balb.idr|f0_c57.idr	intron (NM_153806, intron 1 of 6)	intron (NM_153806, intron 1 of 6)	547.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	6.96163594105778	7.40271303860746	7.17457068844921	7.10366369818033	7.14656049398212	6.86609639262344	-0.216192726550248	0.413087130937655	0.784770288990094
Merged-chr2-124612495-4	chr2	124612044	124613044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	2248.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.04914912270761	7.93093775138738	7.80616064170487	7.88587734053668	8.21376745505282	7.71127570381842	0.03946006001501	0.872081731838454	0.970261003150518
Merged-chr13-30694875-2	chr13	30694375	30695375	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	34816.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	3.64071755218679	3.40383301095311	3.41916544299507	3.39745060999567	3.44434944359949	3.54530970368758	-0.128723001118909	0.826019136518102	0.959051716454082
Merged-chr11-86637915-3	chr11	86637401	86638401	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 6 of 11)	intron (NM_001356531, intron 6 of 11)	33374.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	3.80240674552059	3.82947114123826	3.55519331183682	4.23736621089477	4.12395718459758	3.80560466095643	1.01635516676381	0.0641035051245333	0.329865457909844
Merged-chr17-88368070-4	chr17	88367563	88368563	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72641.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.1695947166949	4.06765236999228	4.00664996159705	4.23638506646308	4.49067443561802	4.71542448941828	1.07432214365472	0.0246782022787161	0.185527995591562
Merged-chr5-72166261-2	chr5	72165761	72166761	+	797.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	1928.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	4.01565794435315	4.14877817667554	3.88935866485416	4.17522061912209	3.78572931838377	3.74184094118494	-0.326056309866947	0.540814600495597	0.856546234535532
Merged-chr2-144527518-4	chr2	144527021	144528021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029763)	promoter-TSS (NM_029763)	-107.0	NM_001360362	241688.0	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	6.3757028310521	6.44154775200195	6.29536465760353	6.40460691644683	6.09502684770693	6.27511672725593	-0.193476027554828	0.491263485563272	0.830448151501811
Merged-chr17-10848973-4	chr17	10848459	10849459	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	8600.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	4.87815912309934	5.08217037814022	5.38039616346801	4.82654752918947	4.77014085983052	5.30286549212384	-0.306932547268035	0.462078595709354	0.815107818354545
Merged-chr2-128769710-2	chr2	128769201	128770201	+	874.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-48602.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.26968542444634	3.82053831346156	4.15601039362144	3.96385535547421	4.20461232101938	3.98479006392233	-0.0929243645247886	0.85726150845806	0.966735539271044
Merged-chr3-87488106-4	chr3	87487567	87488567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-37511.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.60012611327116	4.56809353863886	4.2421452477536	5.03594276569574	5.25632041829691	5.14006987716426	1.47949911630922	0.000458208227760023	0.00980874458848881
Merged-chr11-3199713-4	chr11	3199198	3200198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2655.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	5.91711058748967	6.72702622011539	6.7911182193032	6.38964019989348	6.05406723949321	7.44772673520403	0.394603861971065	0.600925286325668	0.881855262262798
Merged-chr16-49857723-4	chr16	49857248	49858248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	2094.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.90555039303475	8.02395902493561	7.66941543261224	8.06080869167748	8.47378381355546	7.56504419136806	0.310129308463472	0.290887818276384	0.688675626903243
Merged-chr10-11350354-3	chr10	11349866	11350866	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	6921.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	2.10753436044748	2.00426063678407	2.13538705360353	1.81255226996527	1.73818504957234	1.87341563360235	-2.83157996433711	0.0137092307500551	1
Merged-chr1-136138544-4	chr1	136138157	136139157	+	997.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	7267.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	7.31065677295458	7.300449485707	7.28273490978469	7.75486732266668	7.99354048968622	7.2678083245958	0.612710254061576	0.0235760010095762	0.180020009673874
Merged-chr2-158141235-2	chr2	158140735	158141735	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5157.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.03184180596388	4.01053700006631	4.49417145814487	4.40852957300505	4.13131429019836	4.80805547001459	0.735634878294804	0.156213792370328	0.526526392138867
Merged-chr12-34663926-2	chr12	34663432	34664432	+	833.583374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-135043.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.06061078357313	4.23553678759369	4.02642403510042	4.48821459441564	4.25675299970583	4.80285139833865	1.07623192061102	0.0275596042417946	0.197988955734786
Merged-chr3-58417035-3	chr3	58416558	58417558	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	2338.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	5.76572026678333	5.37158823390418	5.56614907469335	5.67517755268788	5.17177480652066	5.39395504462001	-0.289298381066034	0.427743201317476	0.79463398739059
Merged-chr11-100545091-2	chr11	100544591	100545591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-541.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	6.35277582229264	6.58068697813674	5.91823973308989	6.17607343918758	6.68487994956363	6.30495359628647	0.149335783152203	0.654534650747497	0.903872559164033
Merged-chr11-106919605-2	chr11	106919105	106920105	+	687.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	intron (NM_025481, intron 1 of 18)	1110.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	6.21238394599285	6.33291533106554	6.53812565117241	6.27207052193278	6.20855103074868	6.49637697284717	-0.0615735174727661	0.829564630371009	0.960125413857885
Merged-chr3-19301471-6	chr3	19300953	19301953	+	748.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	9869.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.5339419692374	3.38914720967123	3.60579121084698	3.58770889879303	3.46761611981459	3.87028877731454	0.477675953506812	0.411289832753902	0.783877099438722
Merged-chr2-77268731-1	chr2	77268231	77269231	+	616.0	f0_balb.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	11861.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	2.81153725606493	2.86054462186303	2.94695536577763	2.76309323884034	2.80237298176057	3.1309634820926	0.149471213397749	0.834499158690187	0.961319929864283
Merged-chr5-9107965-1	chr5	9107465	9108465	+	562.0	f0_balb.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	7228.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.43148405865664	3.4565872799176	3.5881799153722	3.67828776376771	3.45314470257792	3.70928691840411	0.441098311234392	0.440237997625041	0.801710731755548
Merged-chr4-155869521-4	chr4	155869017	155870017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	-50.0	NM_028020	71957.0	Mm.475640	NM_028020	ENSMUSG00000029034	Ints11	2410006F12Rik|AU044035|Cpsf3l	integrator complex subunit 11	protein-coding	5.61935580564743	5.70923436784552	5.80700611069968	5.50965712785331	5.50237786380565	5.58412152446691	-0.335174583273646	0.290737115703934	0.688551753592876
Merged-chr3-38206094-4	chr3	38205600	38206600	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040541, intron 2 of 2)	intron (NR_040541, intron 2 of 2)	2019.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.52652663563022	3.6700297485956	3.79790798035772	3.87658241243067	4.07467935263451	4.05971304449372	1.10455785131331	0.0371485014572249	0.237861532187527
Merged-chr2-75686116-2	chr2	75685632	75686632	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	18531.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.92438625794535	6.92883372145722	6.6383295007427	6.65275299183779	6.95933985951649	6.68054816706548	-0.100939455788706	0.707486409537663	0.923413423551158
Merged-chr19-46306169-2	chr19	46305701	46306701	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_152247)	promoter-TSS (NR_152247)	271.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	7.33928148805562	6.4112327347749	6.89255195244006	7.08331530583201	7.03251704591682	6.8628588125998	0.085237272359696	0.791747508925744	0.949809355728628
Merged-chr4-55489444-3	chr4	55488894	55489894	+	637.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43081.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.02192802934842	4.2966740963765	4.10610363236866	4.27337498706429	4.25258082359722	4.22244841344198	0.274623130812564	0.559558590277272	0.864986578702902
Merged-chr10-117825067-4	chr10	117824555	117825555	+	814.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	20919.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.14871749442169	6.2541492834386	6.26666025520564	6.28399349186653	6.41938259586406	6.11475021246121	0.111901213276617	0.692332488744439	0.918648603655029
Merged-chr2-26498383-4	chr2	26497882	26498882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	5440.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	6.77471884137874	7.04079466448446	6.87778888544731	6.72671856196698	6.93706797113556	6.80278034272797	-0.116084092784998	0.650724991532538	0.902668504553081
Merged-chr4-141663148-4	chr4	141662652	141663652	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	PB1D10|SINE|Alu	963.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	7.27948495110962	7.72535642139391	7.27625449080923	7.65219636524857	7.85772369037895	7.62034863851167	0.386244819290094	0.132649509545161	0.487414457506459
Merged-chr11-100351558-2	chr11	100351058	100352058	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 8 of 12)	intron (NM_001359052, intron 8 of 12)	4570.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	2.338288835659	2.20063163680973	2.28902144331311	2.36098313323433	2.2312142348655	2.61010517615394	0.847409845773476	0.326670489297568	1
Merged-chr12-84192517-4	chr12	84192078	84193078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1437.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.83243908868942	6.7045676104616	6.71691163844332	6.79362006543688	6.981448976277	6.95230337907759	0.246300623520887	0.324603636694516	0.717544999689449
Merged-chr11-60779265-2	chr11	60778765	60779765	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	1740.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	4.43517409053555	4.15542886049921	4.16120572133831	4.1355119156515	4.31556165378501	4.44920906161701	0.108966988821618	0.817334323608597	0.956767881392089
Merged-chr7-141372347-4	chr7	141371840	141372840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7230.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	7.07178910259814	7.26398030189404	7.19757960663403	7.00118397372238	7.2054326513442	7.10772876111307	-0.104816425294645	0.663637493602784	0.907297207161427
Merged-chr9-113792820-4	chr9	113792315	113793315	+	931.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	-515.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	6.69387798817739	6.88501181296838	6.61530745792866	6.80686047624678	6.9202349977185	6.51275868639947	0.0418375061950894	0.878124698001788	0.971816559882595
Merged-chr10-22058720-4	chr10	22058223	22059223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9356.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	3.43525625244321	3.07740664702467	3.29810748275588	3.91067308778055	3.83913626398893	3.81829561405722	2.14666209338792	0.000607971027898733	0.0122607981796892
Merged-chr12-86905342-2	chr12	86904842	86905842	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20528.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	2.23325098330321	2.16485490237242	2.37197620890341	2.15415752088885	2.09634246176307	2.25471823690272	-0.639238639988247	0.466193416488732	1
Merged-chr17-33628399-2	chr17	33627899	33628899	+	592.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026712)	promoter-TSS (NM_026712)	-693.0	NR_034153	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	4.43587745735947	4.6057356961654	4.98220744815544	4.49200167374699	4.82643154217558	4.87846188961211	0.137235548991574	0.757211370948904	0.939819795914786
Merged-chr4-138041283-3	chr4	138040756	138041756	+	783.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	B3A|SINE|B2	43431.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.64422837914765	6.55172876637357	6.63306792588721	6.62782119421499	6.72727490691895	6.51988783952565	0.0416725123209549	0.871934016954177	0.970261003150518
Merged-chr6-39778141-3	chr6	39777614	39778614	+	680.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32822.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	5.37616347474984	5.52696553378761	5.89263445081454	5.25288888089442	5.21494699963696	5.62391146776848	-0.461071385498533	0.210095195574355	0.602069023711811
Merged-chr10-81407758-4	chr10	81407261	81408261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 5 of 8)	intron (NM_026756, intron 5 of 8)	-1814.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	7.75633174745099	7.76075322610246	7.20512516749504	7.35599336461324	7.4251571422714	7.10484019886975	-0.439454519396651	0.104497542611867	0.431408163019015
Merged-chr10-80140857-2	chr10	80140357	80141357	+	781.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1418.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	6.6198923639025	6.39957217094282	6.25152618442098	6.24394228954923	6.27046669973757	6.0442506364921	-0.400112593847073	0.165889329980916	0.541084333635215
Merged-chr2-103970114-4	chr2	103969629	103970629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142335)	promoter-TSS (NM_001142335)	-158.0	NM_008505	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	8.08180960379199	8.21981717029773	7.85071562773971	7.98522349439262	8.1717139319084	7.97106258368475	-0.0229748913302734	0.919790908318881	0.982111203924103
Merged-chr9-78478916-2	chr9	78478416	78479416	+	746.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010106, intron 7 of 7)	intron (NM_010106, intron 7 of 7)	2808.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.77700150064388	3.85863081389933	4.27541596713249	3.94798916618123	3.83198785812528	3.94494376658209	-0.216020616668899	0.683888316550345	0.915562869749185
Merged-chr10-95300413-4	chr10	95299897	95300897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	23312.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	7.60906825313948	7.49611823257352	7.30344624048574	7.65509207019869	7.86888722669636	7.53536223162858	0.318369418835148	0.186497867204877	0.57106478745799
Merged-chr10-78159449-3	chr10	78158956	78159956	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10312.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.67033588473717	4.66823701598246	4.88279775514578	4.81147873831027	5.1208038200675	4.75855867158801	0.412580570724495	0.309009219882462	0.704802606494279
Merged-chr11-120795394-2	chr11	120794894	120795894	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 2 of 13)	intron (NM_026824, intron 2 of 13)	1001.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	3.24977923906888	3.07879659978114	3.24742349751323	3.38883459708034	3.20108126344471	3.37500275367749	0.527042118007232	0.399551526834828	0.775920914996904
Merged-chr11-69769992-2	chr11	69769492	69770492	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	L2|LINE|L2	4080.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	4.53953354148059	4.97067525920659	5.00349358967156	4.80300612701449	4.96013260732841	4.8169771809331	0.0368060187781129	0.928963973013363	0.983977379981026
Merged-chr8-84842250-1	chr8	84841750	84842750	+	543.0	f1_balb.idr	3' UTR (NM_007591, exon 9 of 9)	3' UTR (NM_007591, exon 9 of 9)	-1585.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	4.36448259028389	4.0811166815489	4.62791609775996	4.42870224934711	3.9656386465606	4.61940638574106	-0.0293581421533049	0.954785410143527	0.98964546481769
Merged-chr10-51422737-4	chr10	51422237	51423237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-57875.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	5.25599378729415	5.48609943658217	5.35487312024174	4.85490188754024	4.95950923826716	5.26673101248077	-0.704753686574768	0.0570446728890783	0.307999035867525
Merged-chr17-47611546-4	chr17	47611037	47612037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	-45.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	7.60398691193821	7.76308959499846	7.50156174204196	7.89303226090499	7.91451272792968	7.20839627741802	0.131848967139614	0.636997052770746	0.897256731014262
Merged-chr16-8783809-2	chr16	8783309	8784309	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45467.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	2.5119436339549	2.47893747520067	2.96946819968088	2.66358472691833	2.61641268522244	2.63056726587645	-0.165156115855183	0.836611234536684	0.962001762335242
Merged-chr19-7227408-2	chr19	7226908	7227908	+	792.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9792.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	6.34642018963169	6.27654398786347	6.41815726808202	6.40248444272316	6.71279393401118	6.40285885394306	0.293570352559843	0.291152584046298	0.688952483900122
Merged-chr7-24850402-1	chr7	24849902	24850902	+	672.0	f0_balb.idr	Intergenic	Intergenic	19289.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	3.7177328851923	3.95795739336625	3.61136799049062	3.76606459187581	3.73436760784737	3.56906854302348	-0.266442177752453	0.632302330909597	0.895488100187663
Merged-chr4-134759746-4	chr4	134759255	134760255	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	8249.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.98265960853977	4.89251710705485	4.65330500143977	4.69810902337427	4.80384941804014	4.50182738627233	-0.401587362084063	0.334077435802989	0.724748007849347
Merged-chr14-17873825-3	chr14	17873325	17874325	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-107819.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.92201561283841	4.13816610481784	4.46406325156591	4.47744517621421	4.14961061046974	4.1392803978215	0.222496672045902	0.659560062157773	0.905502139189942
Merged-chr6-87812641-4	chr6	87812129	87813129	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104478)	promoter-TSS (NR_104478)	-465.0	NR_104478	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	6.20889460837671	6.17052738073811	5.92573499278639	5.98086884200404	6.15008540229815	5.98706814398291	-0.118005847604874	0.689484478103317	0.917392209934871
Merged-chr13-52585976-2	chr13	52585476	52586476	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	B3|SINE|B2	2539.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.37015500187074	5.58616389998173	5.69809584889274	5.5789660372573	5.14960486097169	5.60507754877232	-0.196707300735274	0.583717778401811	0.874225271981634
Merged-chr10-45277745-2	chr10	45277245	45278245	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-11560.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	3.08110686125586	3.29797032735077	3.30636747224904	3.10040818511004	3.22210379068846	3.15088422037189	-0.293373165037183	0.64725729171718	0.901296707040468
Merged-chr17-29842427-4	chr17	29841915	29842915	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 8 of 15)	intron (NM_001081160, intron 8 of 15)	45467.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	5.65631098932188	5.77722319902526	5.49204750556594	5.21797270756951	5.49422276665471	5.08791553762987	-0.688172971969397	0.0534717641031633	0.296510881562352
Merged-chr13-19377392-4	chr13	19376902	19377902	+	853.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	18411.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	3.67428194678295	3.46275770449245	3.7082983940301	3.696656903434	3.79382212773208	4.38819720584988	1.17752720742014	0.0450073897656434	0.267592551346314
Merged-chr9-22475710-4	chr9	22475219	22476219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181316)	promoter-TSS (NM_181316)	4.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	5.49301000358922	5.8607628277469	5.08422301677384	5.16040155098599	5.29621922182722	4.86876744194762	-0.784087146536157	0.0569910162825568	0.307809196601258
Merged-chr5-113649846-4	chr5	113649323	113650323	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	567.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	8.50737651774434	8.96167437207591	8.45355570864616	8.61773877813917	8.74839809201318	8.03378343241713	-0.215605357860755	0.442410077244141	0.803210813434975
Merged-chr10-80938662-2	chr10	80938162	80939162	+	826.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8571.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	2.24611618105421	2.18139568667644	2.44334331713215	2.42985903776466	2.36549895600079	2.51740355886118	0.965590799663154	0.254059450455618	1
Merged-chr4-67447994-3	chr4	67447475	67448475	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	620424.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	2.91644314729279	2.86596281512285	3.08617349120047	2.69144513498686	2.83174313563375	2.74257789054705	-0.984606883702568	0.176774872886388	0.55734654546316
Merged-chr17-71209936-1	chr17	71209436	71210436	+	1000.0	f1_balb.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	5282.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.20388513311067	3.76279241865688	4.03179360426989	4.06827259307532	3.8204828866058	4.23568307385533	0.0932550722844023	0.860417704612669	0.967494646757537
Merged-chr13-60492292-2	chr13	60491792	60492792	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-109655.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.12413174545364	4.14320036695585	4.46318067971141	5.3971395895606	5.587657884737	5.31642721995906	2.83721166668046	2.05363967338475e-11	3.1469475127624e-09
Merged-chr5-148495368-4	chr5	148494869	148495869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56304.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	7.191327672966	7.1943035586989	6.94771884041301	6.87565227698813	7.05223537115809	6.79624047885328	-0.3076481992577	0.223112462661159	0.617940766422471
Merged-chr2-90679282-4	chr2	90678816	90679816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021512, exon 2 of 37)	5' UTR (NM_021512, exon 2 of 37)	2101.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	7.08583078388471	7.36573347811685	7.13570123310629	7.22717872437272	7.33969300318013	6.85646070982096	-0.0546290249110321	0.837069679867605	0.962035641067236
Merged-chr7-17090318-4	chr7	17089841	17090841	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310628, intron 1 of 5)	intron (NM_001310628, intron 1 of 5)	16301.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	3.60106990986374	3.57448176501769	3.89766197104159	4.05191381647574	4.2186498471889	4.06340941740187	1.35362248318579	0.0100940661422305	0.101035372977591
Merged-chr18-34857556-2	chr18	34857056	34858056	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3651.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	6.00973560999787	5.80966261589488	5.76263757011588	6.80593897335169	6.86097764442857	6.24665355030357	1.33642372400125	2.21142836419021e-05	0.000794510066181082
Merged-chr8-83714285-1	chr8	83713785	83714785	+	633.0	f1_c57bl6.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	-892.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	3.20304569981751	3.31749708755552	3.45904927015333	3.19407044962426	3.3125084971036	3.42362793878711	-0.0595745894111849	0.922937675013969	0.982629432513311
Merged-chr1-87852474-2	chr1	87851974	87852974	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	-813.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	5.05408270779163	5.05557645440825	5.32186777239643	4.8232628359558	4.40778787599426	4.94473304018949	-0.909263786579036	0.0294960857152472	0.206557002204535
Merged-chr16-31946652-2	chr16	31946152	31947152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027897)	TTS (NR_027897)	1869.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	5.47210225848172	5.30949314740507	5.11285349744782	5.32274273104025	5.23674715601667	5.21276538628122	-0.114320991138257	0.746863704304387	0.936384575282286
Merged-chr19-56801476-4	chr19	56800979	56801979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 6 of 14)	intron (NM_170757, intron 6 of 14)	12204.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	6.57065107859416	6.54746486749671	6.39913455149136	5.71235910054502	5.77812586885178	6.00651851952325	-1.15955807706252	5.69382629509662e-05	0.00175666258198888
Merged-chr12-100925200-4	chr12	100924700	100925700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17002.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	6.93490033006438	6.94829417016221	6.40376048794261	6.11361911234853	6.24805885703125	5.97063609342901	-1.08759228600921	0.000341785693742084	0.00775546877689973
Merged-chr15-53239793-2	chr15	53239293	53240293	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	106390.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.38936172032655	3.2263476526604	3.19645807449766	3.09897540672824	2.97819818862762	3.26838387363385	-0.698816052588727	0.283491227090691	0.681376161050487
Merged-chr15-63606117-3	chr15	63605585	63606585	+	840.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126477.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.30597578673838	4.2212524622626	4.50892648771414	4.4423459555338	4.25864630847928	3.97403959435226	-0.260616012875799	0.590586373569779	0.877301111216348
Merged-chr4-3646228-4	chr4	3645750	3646750	+	861.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10256.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.30497945104786	4.95766307803638	5.29028102996844	5.46403854229016	5.35765593274894	5.41435672167209	0.44426727626668	0.212053816941451	0.604420229358776
Merged-chr14-70599663-4	chr14	70599144	70600144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	CpG	191.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	7.70493217918633	7.34818069116576	7.11469646227565	7.50751209315872	6.93553289465971	7.10658813895973	-0.315013505085609	0.284270880274927	0.681994389352597
Merged-chr12-85496420-2	chr12	85495920	85496920	+	901.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22530.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.34031395415339	3.04787364124191	3.2029407500186	3.13750641747132	3.1551157824179	2.90498810670534	-0.546411184812162	0.423515860251189	0.792050429285735
Merged-chr16-91043990-4	chr16	91043505	91044505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 1 of 17)	CpG	374.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	7.64519971806478	7.60099186033198	7.3439613628597	7.67202172091548	7.39122620781086	7.32055170437144	-0.102346201292832	0.67755172353832	0.913010966021872
Merged-chr5-113641646-2	chr5	113641146	113642146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	intron (NM_001359060, intron 2 of 4)	1957.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.5414128129438	4.67451436445202	5.13283216369551	5.28035126575871	4.76056477373501	5.03434658272905	0.533252763266865	0.222943751255015	0.61780657375114
Merged-chr7-99141287-4	chr7	99140789	99141789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178635)	promoter-TSS (NM_178635)	-145.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.82046257769934	7.7414518304974	7.50292254317651	7.69787418686302	7.79711571480099	7.52883327862404	-0.0234723686055236	0.920337257389896	0.982334338973564
Merged-chr18-77761185-2	chr18	77760685	77761685	+	796.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 6 of 10)	intron (NM_001357531, intron 6 of 10)	6614.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	3.89893967041888	3.95725605672066	3.86329938707346	4.09510002055793	3.69677978688432	4.0314416456281	0.111960438682447	0.830891304073584	0.960370002015736
Merged-chr4-155550643-3	chr4	155550146	155551146	+	843.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-11735.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.66800294102116	3.78725793336064	3.79653863042368	3.7444428474348	3.15305869877865	4.00543562553695	-0.218683003694144	0.739319459259792	0.934213727972483
Merged-chr5-96792602-4	chr5	96792113	96793113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013470)	promoter-TSS (NM_013470)	-772.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.34785491655577	5.62406731514801	5.57808632881411	5.76250452160105	5.75235830873732	6.00633914595552	0.583160414498518	0.0734450664239426	0.356110779500228
Merged-chr1-150373058-4	chr1	150372548	150373548	+	660.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 11 of 13)	intron (NM_001357579, intron 11 of 13)	-19790.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	3.3887189354969	3.19797707911512	3.27989158992829	3.26490191964597	3.41816763297841	3.23490491845636	0.0894999562324905	0.885097868308857	0.973538624783452
Merged-chr5-32748190-3	chr5	32747697	32748697	+	954.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-1855.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.74845335614855	5.71528581941923	6.02736482204753	5.41467995961085	5.46811577266187	5.43687816288243	-0.718640488819022	0.0275460293483163	0.197931779794016
Merged-chr14-45388847-4	chr14	45388341	45389341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019425)	promoter-TSS (NM_019425)	-45.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	5.0824194378316	4.73830959522735	4.88645903868108	5.33872535467595	4.82092057758843	4.44058026564008	0.0395557806958815	0.933066465857281	0.985356091252617
Merged-chr5-138085647-2	chr5	138085147	138086147	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029869, intron 1 of 3)	intron (NM_029869, intron 1 of 3)	563.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	8.01299469406667	8.41381660208095	7.52372452290361	7.84143916317979	8.17923614651255	7.62212365798852	-0.191740823973443	0.530067287081385	0.851070276054813
Merged-chr16-44118223-4	chr16	44117719	44118719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	21040.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	6.66936009749707	6.7444990286339	6.52352621018144	6.42001843987249	6.68806837513595	6.5293246802682	-0.15693456738118	0.557564818900723	0.864250916545731
Merged-chr13-113242373-4	chr13	113241921	113242921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32762.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	4.70106242206828	4.39046278262947	4.68063903765935	5.0560036308684	4.58658671057386	5.00123514316324	0.682295598703707	0.116190765979208	0.455137876890266
Merged-chr2-131423770-3	chr2	131423274	131424274	+	809.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-68088.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.42118616066667	4.34839546214836	4.42838699543707	4.51672839791164	4.11683301787274	3.84927692347197	-0.535930458079732	0.293933098538625	0.690457148203017
Merged-chr4-59460229-2	chr4	59459729	59460729	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21596.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.73762625599332	2.74973095241839	2.79659155246972	2.71348939376504	2.49494599111035	2.74773612328862	-0.597688061823943	0.428713708893964	0.795442409348636
Merged-chr9-99200511-3	chr9	99200023	99201023	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36716.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	2.77673978438052	2.66696173282198	2.6873373259473	3.18130846094599	2.82953674892256	3.18904054028922	1.80414575954178	0.0165938836765743	0.142611094725734
Merged-chr13-52595010-4	chr13	52594508	52595508	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	-1874.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.70425698509615	5.59465001929293	5.86984636026259	5.56481830484203	5.47980064793878	5.73935028583448	-0.242395043780876	0.454722820685661	0.810532225390276
Merged-chr11-99189358-4	chr11	99188853	99189853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34276.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.50496535380868	6.50295056167427	6.17815328424428	6.46949478511499	6.86605804895838	6.36674380882905	0.29854198299332	0.320735893318813	0.714532129212091
Merged-chr10-80577640-7	chr10	80577157	80578157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_078477)	promoter-TSS (NM_078477)	-361.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	6.78887873263132	6.44917535640491	6.84199358585072	6.44024347246119	6.60840125836547	6.390489258644	-0.333016511429765	0.234693253773815	0.630784177826417
Merged-chr13-101083537-2	chr13	101083037	101084037	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-148590.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	2.55863656315592	2.72253961820041	2.71053566513542	2.48991218533961	2.56165871405002	2.59827560552826	-0.664513177854768	0.388691903520034	1
Merged-chr1-70858753-3	chr1	70858275	70859275	+	895.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177164, intron 3 of 3)	RMER15|LTR|ERVL	133060.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	4.17101591827931	4.56731145983098	4.60867871793544	4.35462928255954	4.0214836562747	4.21290141673844	-0.690021270172023	0.153519300524499	0.522476745799114
Merged-chr5-64029930-4	chr5	64029429	64030429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15044.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	4.03885269827718	4.26118247378085	4.03544232359008	5.13946521275799	5.19064491813432	4.92469410591063	2.38121675514835	1.6474172905224e-07	1.10904771771673e-05
Merged-chr4-139599108-4	chr4	139598584	139599584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-23810.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	7.64426512492854	7.59336397875858	7.06312912378361	7.64098157990435	7.80591516106675	7.13514308660661	0.144999340961005	0.6268839284558	0.892975730763041
Merged-chr7-81842048-1	chr7	81841548	81842548	+	849.0	f0_balb.idr	Intergenic	Intergenic	-12617.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	3.51817645907502	3.57995918846994	3.78607570450427	3.36589508445298	3.35728080817397	3.71054191332714	-0.533362249165361	0.36713584731308	0.752113401392775
Merged-chr2-29130260-3	chr2	29129737	29130737	+	960.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198033, exon 4 of 26)	exon (NM_198033, exon 4 of 26)	5245.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	4.85900405408184	4.8760608670262	4.99032054043221	4.91143336781499	5.00256162179706	5.36428466871066	0.411192011530535	0.289550842530306	0.687270267721979
Merged-chr10-80102636-4	chr10	80102109	80103109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	93.0	NM_183426	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	7.62789369028462	7.47983343152279	7.60203878888389	7.86731757262807	7.88929933631478	7.81769562792331	0.418672673543525	0.0531174073761844	0.295381489872188
Merged-chr16-91464070-4	chr16	91463579	91464579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1025.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	8.19278316816804	7.92460638331321	7.90459287397764	8.2817660992568	8.55222891577921	7.83419689395342	0.349914375569648	0.18951381332399	0.575408333481576
Merged-chr8-46931401-4	chr8	46930906	46931906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3G|LINE|L1	-55481.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.34682804507217	7.51338800920565	7.44212652226069	7.1965348727131	7.65945746456136	7.30270003440473	-0.0365574228439024	0.885456755706716	0.973611377589001
Merged-chr9-66978772-2	chr9	66978272	66979272	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3288.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	3.37799638217168	2.97017235589675	3.26331167282778	3.00915651592136	3.06088524357521	3.54204189734926	0.0268047048764928	0.969534778422938	0.993175393991947
Merged-chr4-102574427-4	chr4	102573929	102574929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	4369.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.13908999638354	7.0974999389645	7.05246744914458	7.02471424342113	7.29107510756411	7.07085977784527	0.0638714388173898	0.792703638420344	0.950032655975256
Merged-chr16-17132433-4	chr16	17131925	17132925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-42.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	6.90570583222632	6.93824283447663	6.57888345043066	6.66940951396826	6.75617505452288	6.03916357650201	-0.444242692649495	0.162923373816226	0.536350806900858
Merged-chr10-11281014-6	chr10	11280668	11281668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027968)	promoter-TSS (NM_027968)	-162.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	8.83055335785853	8.8761546187229	8.38239939679391	8.5218092494837	8.59746823592122	8.2873120496713	-0.333498308411976	0.163857752979222	0.537798828885102
Merged-chr19-45047671-4	chr19	45047198	45048198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155547, exon 1 of 11)	non-coding (NR_155547, exon 1 of 11)	122.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	7.383087979309	7.28060833203057	7.29584534605457	7.23950535454983	7.02411698132587	7.52784591388501	-0.0754649596130702	0.767464592876818	0.942617496111852
Merged-chr14-64627346-4	chr14	64626854	64627854	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-25177.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.43582839000792	4.2756652778207	4.21190153585044	3.85721545502881	3.68267755249937	3.65873370106481	-1.76627541797445	0.000701958744063753	0.0136980729774992
Merged-chr15-73183608-2	chr15	73183108	73184108	+	731.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	1339.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.48203917530007	5.53067835064229	5.24804492286574	5.56512843021096	5.19201596828912	5.37721894426391	-0.101609634228522	0.77368649906209	0.944173663294033
Merged-chr9-77733939-4	chr9	77733446	77734446	+	948.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-20589.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.62880711286844	4.70833302230929	4.63552950089971	4.22522274015135	4.32045070316756	4.00859721053921	-1.17012842990779	0.0111129782065751	0.108284164342321
Merged-chr2-129197286-2	chr2	129196786	129197786	+	868.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1487.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	6.68053928548929	6.37038618572625	6.27425060741336	6.52178551187652	6.81488621928631	6.35549820811745	0.207028005771074	0.488143622507851	0.828961478869205
Merged-chr11-118163002-2	chr11	118162502	118163502	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33783.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.83119400242778	3.66448274751196	3.87911902079939	3.66025425025984	3.27796316593907	3.75339505311323	-0.755623821879426	0.20027774682276	0.589262190319174
Merged-chr19-7343508-2	chr19	7343008	7344008	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1648.0	NM_001080388	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	3.69095892358305	3.68878506108856	3.91142699081697	4.28359831855618	4.16129472900787	4.21705745193095	1.40404876837162	0.00531054024429094	0.0637908809942198
Merged-chr17-34033092-4	chr17	34032594	34033594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	744.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	6.80497119447309	6.80737131390151	6.88212306880798	7.51634319249584	7.48508532276386	7.13319961823437	0.856756441843972	0.000592251969789435	0.0120283382724528
Merged-chr12-111669385-4	chr12	111668940	111669940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021273)	TTS (NM_021273)	2898.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	7.2505032790383	7.06838860859763	7.46110569584931	7.311164884359	7.20411729928229	7.11524008806883	-0.0708109061041674	0.77614699121043	0.94480820353868
Merged-chr16-90284554-4	chr16	90284039	90285039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-36.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	8.1153422920352	8.21184865275722	7.79247662091256	7.83562125542633	7.98950189588193	8.03103311011014	-0.149504187004969	0.520727883235619	0.846662720861138
Merged-chr10-68091976-4	chr10	68091488	68092488	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112418.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.71807835960473	4.75016483277624	4.37309473763435	4.35488937503931	4.5860115701147	4.34788413099814	-0.469019530994336	0.294983763843775	0.691928183145752
Merged-chr14-20928269-4	chr14	20927762	20928762	+	946.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	5.0210331355192	4.87312552816651	4.79987814722588	4.48388043848337	4.56019834490717	4.71085951273693	-0.752765923447402	0.0626874847912647	0.325597576182484
Merged-chr10-44636978-2	chr10	44636444	44637444	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178196.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.23999205425746	5.16947044157035	5.48821126407417	4.9617615411438	4.99686795282681	5.29590116460179	-0.440249386421272	0.235837809269483	0.632196962128085
Merged-chr16-78265608-2	chr16	78265108	78266108	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10154.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	6.59532530671898	6.93284450719247	6.24262417889167	6.72215459085336	6.87649766380191	6.42995131116004	0.101075893623158	0.747761081677783	0.93673826250006
Merged-chr9-35211682-1	chr9	35211182	35212182	+	966.0	f0_c57.idr	promoter-TSS (NM_001291449)	promoter-TSS (NM_001291449)	479.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	7.51739537276233	7.95733024096804	7.66615491466804	7.64445916804962	7.81901711827549	7.50907520015604	-0.0873968587148438	0.726110089383729	0.929743505822386
Merged-chr7-16102681-2	chr7	16102181	16103181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	4101.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	3.91119366494791	4.03314037362455	4.00306550274479	3.87051493680984	4.0401104402427	4.02370903434813	-0.00455370210586241	0.992670755851502	0.998523796268552
Merged-chr12-108333645-3	chr12	108333139	108334139	+	951.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-677.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	4.49912459228735	4.8427976835972	4.63389523471301	4.25966011989632	4.4616788487442	4.16132403677239	-0.894751878306802	0.0512386069305862	0.288500609384234
Merged-chr4-141635815-4	chr4	141635355	141636355	+	812.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 6 of 18)	intron (NM_001347237, intron 6 of 18)	-12021.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	3.79257444131821	3.51881069414282	3.79675364342868	3.72062716359005	3.93308893429994	3.81584339118673	0.407013345458588	0.454185455184601	0.810104016757399
Merged-chr16-75962911-2	chr16	75962411	75963411	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-37873.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	4.887920077821	4.73982794489633	4.97209198377293	4.69422897685527	4.82606014678151	4.66146517452088	-0.291207145696612	0.464320996485482	0.816311806198398
Merged-chr3-107671690-3	chr3	107671183	107672183	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 6 of 16)	intron (NM_145542, intron 6 of 16)	24373.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	3.75811367142005	3.87104600429897	3.84140718858205	3.99423605297659	3.83575208589383	3.64322885714174	0.0434041961339327	0.93490828968915	0.985727573165395
Merged-chr3-81102786-2	chr3	81102286	81103286	+	764.583374	f0_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	66370.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.40576066681714	6.77426223059152	6.26392639422422	6.29942696598938	6.57512670575787	6.55239477646326	-0.0454314210184141	0.878541728770678	0.971941098079671
Merged-chr2-32236562-4	chr2	32236045	32237045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-138.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	6.27626313288903	6.34833376536064	6.57870406243918	6.36086089245262	6.66133292569222	6.42862640269497	0.160370949719881	0.569593259329622	0.8688875602138
Merged-chr3-20033794-4	chr3	20033351	20034351	+	809.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 1 of 16)	intron (NM_080634, intron 1 of 16)	1459.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	5.09127678320568	5.41799871490759	4.97113315785653	5.2762165481556	5.19035847625499	5.40365347026962	0.202457785698076	0.587479016312463	0.875944414387833
Merged-chr18-34853795-2	chr18	34853295	34854295	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7412.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	2.97400521348489	2.89699531126502	3.02438951444738	3.234163942577	2.98019055466169	3.21281957693274	0.813539525657904	0.22523761227618	0.620063864646258
Merged-chr1-171326816-3	chr1	171326303	171327303	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	3.36322820521039	3.48685668860295	3.58687029466389	4.60688881237996	5.00225487746243	5.02688230493184	4.90925994640611	1.11117883237914e-11	1.77464430488682e-09
Merged-chr6-30509146-2	chr6	30508646	30509646	+	637.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027073)	promoter-TSS (NM_027073)	627.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	6.41932607523695	6.50326228338734	6.49083874635356	6.49420246982398	6.57755510151013	6.10041579254093	-0.0803502108477269	0.779479786581132	0.94576911082042
Merged-chr7-80032975-4	chr7	80032469	80033469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6741.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	7.83297904437974	7.55437311740666	7.29799761874233	7.93174667098052	8.11238946098571	7.48201177689608	0.41633762314851	0.1380477785	0.496590539926161
Merged-chr17-47792111-2	chr17	47791611	47792611	+	945.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161723, exon 9 of 9)	3' UTR (NM_001161723, exon 9 of 9)	6367.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.49166215253078	3.27302111793237	3.30490095095596	3.38421008236796	3.47490290079432	3.48909537044204	0.33220117750577	0.577757422285663	0.87219514592351
Merged-chr1-184235788-4	chr1	184235287	184236287	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	201406.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.63194467766395	3.51593565269019	3.80133681793062	3.80494094316296	3.57654463451966	3.50070704221182	-0.043266818488159	0.939259153762425	0.986642049891601
Merged-chr3-137997465-3	chr3	137996970	137997970	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-15921.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	2.5011532606836	2.62004272700391	2.54680008068688	2.32758859831025	2.20098104996977	2.29315856626626	-1.99961120095526	0.0240278586497288	1
Merged-chr12-84803867-4	chr12	84803364	84804364	+	833.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	30594.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	5.30663845864618	4.98016760892391	5.14136694544735	5.1636937047774	4.8248293756951	5.10509354999271	-0.249218151778652	0.515868381011737	0.84397121996116
Merged-chr13-45372406-2	chr13	45371891	45372891	+	603.833374	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-17351.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.34624238303694	6.52763309897145	5.98678531020761	5.85011265011613	5.71958599105972	5.26774574657805	-1.1564334943003	0.0010395060036562	0.0185492634682018
Merged-chr19-4182043-4	chr19	4181555	4182555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6576.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	5.70492661487352	5.17171490575783	4.83801917299032	4.8947670105971	4.88294849597859	4.90598419357996	-0.848067526476675	0.0465251808231153	0.272937080731223
Merged-chr2-118727029-4	chr2	118726571	118727571	+	837.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	1367.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	4.31211860868008	4.47159562095638	4.34008130356639	4.73163195325098	4.44911197434799	4.11226093655808	0.214491132273911	0.651701436674257	0.902896807825606
Merged-chr7-3295861-4	chr7	3295356	3296356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093766, intron 1 of 1)	intron (NM_001093766, intron 1 of 1)	2828.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	5.32271580229317	5.22821177683286	5.22775130969018	6.27411223491099	6.1769653097525	6.50794285824561	1.9023497327116	3.15701908157667e-09	3.19573289221206e-07
Merged-chr14-72604321-4	chr14	72603813	72604813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	105690.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	7.3085252564323	7.0905650150876	7.23973406105482	7.13905643057839	7.58420822040773	7.20149549123826	0.175899946186075	0.498160413408431	0.833856267944725
Merged-chr16-13671360-4	chr16	13670853	13671853	+	851.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	-505.0	NM_025976	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	7.08936954107416	7.5047809342365	7.46367484030025	7.51937686412548	7.71830016550589	7.19242861366065	0.204709943869011	0.450594116289006	0.808443910792592
Merged-chr17-87024538-2	chr17	87024038	87025038	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008838, intron 1 of 5)	intron (NM_008838, intron 1 of 5)	863.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	4.83148033248213	4.77295434779987	4.94457180446804	5.62629839807733	5.9738844657832	4.97307743565501	1.51961002835176	0.000309062278845324	0.0071454443173553
Merged-chr5-137116233-4	chr5	137115744	137116744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201373)	promoter-TSS (NM_201373)	-37.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	6.54533810855571	6.30463738047561	6.63140115432918	6.66164150108799	6.937803677187	6.84311757338474	0.518835564797254	0.0553726975965093	0.302564448490304
Merged-chr1-171380053-4	chr1	171379532	171380532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	-8928.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	5.4725563990327	5.37829340203761	5.36959486304746	5.05743729004764	5.07553762203767	5.31125804146019	-0.535843708229801	0.124996145507326	0.473080703906007
Merged-chr4-108405936-4	chr4	108405447	108406447	+	954.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024198, intron 1 of 2)	intron (NM_024198, intron 1 of 2)	766.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	5.58905335784909	5.66531677026222	5.7710684207136	6.03891236126886	6.13522999604715	6.23295366883421	0.818251001811646	0.00617995733125745	0.0712712251724559
Merged-chr11-74661746-2	chr11	74661246	74662246	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081158, exon 10 of 26)	exon (NM_001081158, exon 10 of 26)	12251.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	2.21016138167877	2.1792996949896	2.43013750689923	2.15116787184709	2.17506960552793	2.50374934173583	0.0512972476994147	0.95379085717526	1
Merged-chr13-119488457-4	chr13	119487964	119488964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	-80.0	NR_027974	67304.0	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	5.45346002548722	5.51672914771198	5.41374805484991	5.48554744522893	5.38224303073417	5.93417161878598	0.273115324375184	0.439581299698976	0.801216871474848
Merged-chr1-88216743-2	chr1	88216243	88217243	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 4 of 4)	B3A|SINE|B2	4784.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.40165745382615	3.58056832525638	3.64108674811357	3.32292948799844	3.61949486899784	3.75946891297512	0.12378175034442	0.834536097416801	0.961319929864283
Merged-chr3-58413895-2	chr3	58413395	58414395	+	856.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-825.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	6.93999858527656	7.11364027512041	6.70455648978584	7.00889691410788	7.13924728681228	6.64279397009943	0.0303720292979405	0.913883538392921	0.980811835491594
Merged-chr16-10483817-2	chr16	10483317	10484317	+	681.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	3745.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	3.48648310433278	3.37173628898284	3.63572079791282	3.48987046211556	3.59542209272558	3.70495987195844	0.362983718882677	0.526050875611608	0.849279136234443
Merged-chr4-150546922-3	chr4	150546424	150547424	+	880.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	105250.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.35267730015564	4.69127859179748	4.14808609266197	4.32864202347066	4.28440532594475	4.16822664061905	-0.426096424101077	0.37504037220206	0.758377211092613
Merged-chr1-43322263-4	chr1	43321746	43322746	+	927.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-123505.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.33694124959662	5.95144870945428	5.9604565835693	6.54379578794269	6.6862592459041	6.41275230714644	0.7497634075579	0.0115684341147456	0.111449145052651
Merged-chr19-6338625-2	chr19	6338125	6339125	+	698.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 7 of 9)	intron (NM_001168489, intron 7 of 9)	-2535.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	2.07384579283466	1.93741516678359	2.16945887946636	2.00665557606741	1.80627058732692	1.90820553479563	-1.28250867334645	0.196481759355185	1
Merged-chr2-132109599-4	chr2	132109066	132110066	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3A|SINE|B2	35542.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.84411297582942	6.91684507407806	6.65763165991139	6.89843334541763	7.13382417671803	6.63009706249619	0.153767960840902	0.576353189468183	0.871585692229598
Merged-chr14-47352479-3	chr14	47351982	47352982	+	871.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21378.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.45223827040641	6.30851772364688	6.55304386194297	6.05724614932392	5.7754178256799	5.54118899613244	-1.05473731891845	0.000800697197317378	0.0151867819453805
Merged-chr12-17762315-3	chr12	17761784	17762784	+	733.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71475.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.4396148562938	3.715889970279	3.71592647433704	3.84812668038404	3.52134400626653	3.68228896714106	0.203770682354415	0.720798679434804	0.928324696220711
Merged-chr6-37722042-1	chr6	37721542	37722542	+	700.5	f0_c57.idr	Intergenic	RLTR49|LTR|ERVK	-148769.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	3.56833481272464	3.6443096799858	3.57851221910391	4.23844779736491	4.56554732034078	4.63668141812656	2.73473775834279	7.08920979017488e-07	3.99376417211152e-05
Merged-chr14-45024252-2	chr14	45023752	45024752	+	716.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36141.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	3.65458539360268	3.59167744602392	3.66071216184121	4.01081270635197	3.74085160514389	4.11973460212474	1.04809407009339	0.0530274672607086	0.295078545832211
Merged-chr5-135008068-2	chr5	135007568	135008568	+	813.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	4.26426640944661	4.31654175583239	4.01258204269988	4.03255829641745	4.51753380443763	4.5749367139915	0.488242902735578	0.328377323946362	0.720562985671201
Merged-chr2-117444501-3	chr2	117444002	117445002	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101625.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.07169071316665	2.75803528634018	2.90613730391256	2.92126536213422	2.82220076006383	2.9790711357198	-0.0663517057271506	0.925351654251781	0.983166193538686
Merged-chr7-102015061-4	chr7	102014566	102015566	+	783.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133947)	TTS (NM_133947)	3089.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	5.46479415885153	5.31164407357431	5.82032541697797	5.5530647586196	5.63474488179097	5.55018674890384	0.0885261317243058	0.797183229225447	0.951678829711438
Merged-chr11-70850856-2	chr11	70850347	70851347	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	L2a|LINE|L2	6086.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	3.71658794460927	3.29036955139772	3.58354124573699	3.21487234536563	3.30386643386831	3.75153038314087	-0.375012209614626	0.561482799657576	0.865407801976397
Merged-chr1-178335269-1	chr1	178334769	178335769	+	623.5	f0_balb.idr	intron (NR_149827, intron 3 of 16)	intron (NR_149827, intron 3 of 16)	2546.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	5.2593512708111	5.04799263856145	5.23849697589638	5.47505745654361	5.53720818055483	5.36609994951242	0.56661331080603	0.10010839290848	0.421955278715811
Merged-chr6-136547239-1	chr6	136546739	136547739	+	738.0	f0_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	28388.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.4934093409996	4.38295479522222	4.22132306621781	4.20219606230468	4.0675798105652	3.99042315957065	-0.781127420336826	0.0987899895293324	0.419308174288752
Merged-chr16-76370822-4	chr16	76370323	76371323	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2226.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.57990568252574	6.31932333260358	6.44597213638532	6.89618927718678	6.92181980631133	6.61371982638146	0.590532988926048	0.0288784537667264	0.203879041322058
Merged-chr5-21786727-4	chr5	21786229	21787229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011188, exon 2 of 13)	exon (NM_011188, exon 2 of 13)	1446.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	7.42811450083967	7.77580717700315	7.3971411597529	7.64691270120875	7.73393004182331	7.53828335292635	0.136640172342433	0.573978298126911	0.870450078670662
Merged-chr16-57607231-3	chr16	57606744	57607744	+	706.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	-377.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	6.0389152269681	6.40021542028458	6.18150905709844	6.30444091461779	6.44190847348941	6.06327646897443	0.118359776041038	0.694053097024059	0.919144532112777
Merged-chr8-116974388-4	chr8	116973966	116974966	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	4187.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	5.91444224204902	5.75981500125854	6.17989395929866	5.71864088770198	5.71073683497239	5.99200908863066	-0.262288050326287	0.414147695495483	0.785655041876525
Merged-chr6-28424531-2	chr6	28424031	28425031	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 2 of 5)	intron (NM_007480, intron 2 of 5)	927.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	4.72330450912671	4.6438124084639	4.8870408155548	4.69807465525932	4.46178952636152	4.84587814881674	-0.192815073602809	0.644941952878165	0.900371814385472
Merged-chr7-118797786-3	chr7	118797277	118798277	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	57506.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	7.26454550170747	7.30885545767742	6.96975484670042	7.25184518073667	7.30965107456199	7.22443950780289	0.0979970152211563	0.687166333972927	0.916983035113856
Merged-chr1-181210696-4	chr1	181210217	181211217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1261.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	7.21275468896857	7.30458101147835	7.16575622592183	7.45240624638666	7.58911559798697	7.40771143242766	0.382326477212588	0.0970402897268638	0.415399137133084
Merged-chr17-11353000-3	chr17	11352488	11353488	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 4 of 6)	MLTR25A|LTR|ERVK	512629.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	3.12601812280956	3.21850407956	3.13981601420941	2.94345004894375	2.78694756273811	3.09634536932849	-1.04226710767266	0.130064234368814	0.482195010397444
Merged-chr8-71464802-4	chr8	71464312	71465312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053162)	promoter-TSS (NM_053162)	-114.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	6.25323640327044	5.90277648845978	6.41482344785396	6.50314316748942	6.46667439249437	6.20056499403171	0.33996999599416	0.264731167284383	0.662666328517541
Merged-chr17-26235149-2	chr17	26234649	26235649	+	583.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	9093.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.07046220724665	6.9865411764593	7.12814261455899	7.57537879512479	7.83609514002935	7.13405751268615	0.738337883438413	0.00702439427958413	0.0783283032987988
Merged-chr17-29004010-2	chr17	29003510	29004510	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	3985.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	4.7208784160291	4.87330911994075	4.95209488754981	4.89278358113819	4.98508638439396	4.83366145779698	0.143048400962534	0.71111054313531	0.924558647751225
Merged-chr9-7253451-2	chr9	7252951	7253951	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19063.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	3.25907559130114	3.47895289376374	3.28288694266731	3.03566124470662	3.08537709959371	3.24063226088845	-0.964794454696924	0.13367972110784	0.488926137304149
Merged-chr1-165667104-4	chr1	165666599	165667599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-32558.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.79367995992718	7.72625977185374	7.49178886818835	7.70119426924807	7.86839203439794	7.67603435876124	0.104125047707865	0.651050347199339	0.902735752871093
Merged-chr5-135471924-4	chr5	135471428	135472428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73194.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	8.05301266649764	8.30559899866523	7.8534643724933	7.73541120884171	7.98452350400953	7.6308815000055	-0.413754681788203	0.0941385911576377	0.408675530497455
Merged-chr10-80114728-4	chr10	80114223	80115223	+	981.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1080.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	6.80187501348763	6.78113232780358	7.01957379665969	7.15932828384113	7.45761284183352	7.34970655424794	0.705111803844619	0.00467997212999853	0.0584804181356538
Merged-chr12-44919831-4	chr12	44919328	44920328	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	154655.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	3.10236995573763	3.26825925103981	3.08834544720012	2.80115057353826	2.93366236101534	3.16027038547235	-0.865675725291648	0.212991291568291	0.605651677561833
Merged-chr6-37441791-1	chr6	37441291	37442291	+	1000.0	f0_balb.idr	exon (NM_178661, exon 1 of 12)	exon (NM_178661, exon 1 of 12)	357.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.64447506849954	6.95235006654981	6.87513432434819	6.92616645419149	7.03427416913312	6.68526834157894	0.107338438846002	0.687140847191601	0.916983035113856
Merged-chr6-135198049-4	chr6	135197549	135198549	+	972.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028982)	promoter-TSS (NM_028982)	-51.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	4.31799709086093	4.67162451940082	4.59118057596534	4.43862565860451	4.17808367405412	4.27508758993609	-0.615839391203537	0.178281107725547	0.559389924835031
Merged-chr14-34502770-4	chr14	34502293	34503293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009758)	promoter-TSS (NM_009758)	-247.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	7.07716387853792	6.8635022000242	6.39724987988377	7.15468190867976	6.76595297272626	6.84523980981209	0.171961515289181	0.569805350052665	0.868897023832802
Merged-chr3-126612948-4	chr3	126612467	126613467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	Lx5c|LINE|L1	16016.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.5848899868623	6.68202930122658	6.55610167732543	7.00823975407503	7.13048753643909	6.63335208061657	0.531350668612608	0.0511125237361858	0.288165685096468
Merged-chr11-121236772-1	chr11	121236272	121237272	+	1000.0	f0_c57.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-464.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	7.52000338895777	7.60590465311688	7.43607137425382	7.58156558085832	7.6839982376366	7.62242626862405	0.152862853791253	0.49045339444647	0.830053405840466
Merged-chr13-91362134-3	chr13	91361647	91362647	+	810.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25938.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	2.70843834036462	2.60065149786046	2.84705632227075	2.603774770384	2.39937111836899	2.61729960822854	-1.03635025832708	0.190633719956352	1
Merged-chr11-32348314-3	chr11	32347816	32348816	+	912.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	505.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	4.65012165949352	5.03648304380664	5.05464288522527	4.70705396825318	4.37049648627193	5.11802652887739	-0.375386800539002	0.413264124062361	0.784891493802491
Merged-chr7-64049885-4	chr7	64049368	64050368	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103967.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	5.36580635732899	5.33965814474748	5.33312074840543	5.19377768375362	4.58744190931601	4.80121269446488	-0.971016511826025	0.0154290531250527	0.135295674194266
Merged-chr1-128102759-4	chr1	128102246	128103246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	255.0	NM_001357573	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	7.30185935564071	7.58495357537947	7.20951670659288	7.45218311591825	7.71732200328692	7.2043914936921	0.151937691852015	0.568370173932456	0.868549528189122
Merged-chr4-53074058-2	chr4	53073558	53074558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 23 of 49)	intron (NM_013454, intron 23 of 49)	62178.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.49979546568854	2.35410152171031	2.89807162084299	2.38743945002287	2.3156053774351	2.49977013415794	-1.18994702536661	0.166049863240898	1
Merged-chr4-132079764-4	chr4	132079235	132080235	+	912.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4422.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	3.96648915866683	3.84722300236345	3.78324833753361	4.00663261566304	3.79965912925119	3.90517290131971	0.0989208387397984	0.847563287291763	0.964318271116593
Merged-chr8-45416104-4	chr8	45415591	45416591	+	807.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-5472.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	4.41432736337264	4.24501524354062	4.6663604396123	4.35311980155837	4.51551660152069	4.61836037844276	0.138092806373093	0.758615865018694	0.940252463676758
Merged-chr3-127497858-1	chr3	127497358	127498358	+	583.0	f1_balb.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	1257.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.09390277561342	2.97256121129484	3.17170550246078	4.11872860691783	4.13111620317073	3.51052801979509	3.73020700117648	6.84605551245263e-07	3.87778479972879e-05
Merged-chr17-74432369-2	chr17	74431869	74432869	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	B3|SINE|B2	26739.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	7.85285676933963	7.94556446123935	7.69696367955774	7.63412667289545	7.94030845577614	7.61274603967846	-0.13586380548968	0.564904466375002	0.866552670637515
Merged-chr10-20101547-2	chr10	20101047	20102047	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 17 of 29)	Lx9|LINE|L1	-47373.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	2.99768177845388	3.04964052154884	3.34955119685714	3.29289161220806	3.11976784080491	3.25701523957163	0.378563301457468	0.562799997699524	0.865755360453189
Merged-chr6-149187434-2	chr6	149186934	149187934	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113424, intron 1 of 6)	ID_B1|SINE|B4	1278.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	4.33683517427715	4.19097023346058	3.9442192254132	4.19655593837937	4.34202393036787	4.5996771784392	0.553365180713015	0.258727321520548	0.656251800083823
Merged-chr11-118234127-2	chr11	118233627	118234627	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14465.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.41266627706289	7.25308072126004	7.34177105935221	7.08561701256516	7.4558010084965	7.05893882138257	-0.167860464543818	0.508506957803665	0.839818423824339
Merged-chr13-9428135-2	chr13	9427635	9428635	+	967.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	151610.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.31474750857824	4.56786077976633	4.30089120604687	4.51102141250443	4.51007136045953	4.70368161551712	0.410276173677593	0.351020350708159	0.738927106247438
Merged-chr6-137648865-2	chr6	137648365	137649365	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007945, intron 1 of 21)	CpG	420.0	NM_001271588	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	2.45214168679363	2.44738952170945	2.66303987859197	2.37753564409281	2.30909229314051	2.61611801252079	-0.522490157877842	0.525585454895074	1
Merged-chr11-54524118-2	chr11	54523618	54524618	+	784.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	1273.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.76046023644415	4.98324404531261	4.85139107635223	4.98133228336526	5.17929550929978	4.95481660916179	0.39021075886145	0.308423456535922	0.704474428928629
Merged-chr5-104860152-3	chr5	104859639	104860639	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039231)	promoter-TSS (NM_001039231)	-71.0	NM_001039231	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	4.17677037672536	4.09757351042777	4.33957839015353	6.45835202725095	6.72614481519461	6.36147095611033	5.42365286116187	1.52088006967759e-26	3.24485612404444e-23
Merged-chr9-116104044-1	chr9	116103544	116104544	+	557.0	f1_balb.idr	intron (NM_029575, intron 5 of 6)	MTD|LTR|ERVL-MaLR	71319.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.39497657584454	4.18993485629618	4.62119629702973	4.26912423317703	3.88092316725555	4.04751936113779	-0.915753950166814	0.0662568168006323	0.336082492827787
Merged-chr17-88062156-1	chr17	88061656	88062656	+	566.0	f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	2776.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	4.10780916233654	3.98640297635549	3.86184588993238	4.27505439114653	4.1438451051411	4.03761538650049	0.470191489804014	0.339939524041014	0.729624065958935
Merged-chr2-58814665-4	chr2	58814171	58815171	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M8|LINE|L1	59487.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.80065931168367	5.59873574832884	5.67624806104569	5.43400734114457	5.2841538009922	5.22968978433697	-0.713777890847453	0.0318271312965773	0.216344411479912
Merged-chr1-59764055-4	chr1	59763501	59764501	+	993.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-278.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	7.51886662971607	7.65950055513717	7.68537765737979	7.66811419624737	7.65946991686444	7.95057027404925	0.201566438792235	0.381608125069839	0.763233731504131
Merged-chr17-28013424-4	chr17	28012919	28013919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67165.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.97321768902626	5.99572989078126	5.64387831005017	5.4190841158043	5.60412906915507	5.22965950168328	-0.825565175876038	0.0159605396337514	0.138723590896882
Merged-chr1-171283467-4	chr1	171282983	171283983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 8 of 12)	intron (NM_013919, intron 8 of 12)	-2297.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	6.11131193539681	6.0889499846815	6.25635999993132	6.15833264050928	6.21540802496716	6.51418235226516	0.24758931070078	0.392892486755751	0.771377884930667
Merged-chr5-24445238-4	chr5	24444716	24445716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023229)	promoter-TSS (NM_023229)	19.0	NM_023229	66587.0	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	7.34360999007772	7.33802593116481	7.33218605992832	7.25731256425118	7.33796591091177	7.20391224960531	-0.0986667836988953	0.664551796804099	0.907652833270009
Merged-chr18-50097571-1	chr18	50097071	50098071	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	-30630.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	6.43037472876034	6.55109261763116	6.62333127855301	6.69351103923372	6.92290907598142	6.5805432090729	0.344284485079375	0.199680225208837	0.588248843885427
Merged-chr15-25282113-4	chr15	25281608	25282608	+	930.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	131656.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.58930570306834	6.90872726467306	6.38633217491592	6.49478470230807	6.78345163250766	6.30240204721953	-0.161453679974397	0.596736332710915	0.880046639147099
Merged-chr6-54039549-3	chr6	54039065	54040065	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-367.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.96724236279146	5.68323140968327	6.10534962388573	5.97008827261818	5.69609573315099	5.6360220993305	-0.256261383749722	0.43405764910339	0.79814689082248
Merged-chr1-151345257-4	chr1	151344755	151345755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	CpG	757.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	7.17754922896405	7.52974903295411	7.35107888403775	7.33423688673985	7.45547174194393	7.48161158516224	0.091195234573041	0.705154884795841	0.92270290989203
Merged-chr7-66125601-4	chr7	66125125	66126125	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081163, exon 2 of 3)	exon (NM_001081163, exon 2 of 3)	16110.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.50112297825076	5.63939288996166	5.88392528748092	5.21651837146896	5.40082332614864	5.6588107932052	-0.465033696614858	0.183793626176719	0.567209407570374
Merged-chr14-55685375-2	chr14	55684875	55685875	+	636.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3558.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	5.36913674488777	5.28169644424552	5.17229664208721	5.45636979660624	5.55095559592044	5.09426175901099	0.225699366696576	0.532427996486843	0.851971173271146
Merged-chr19-17393489-1	chr19	17392989	17393989	+	622.0	f0_balb.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-554.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	3.88543486848035	3.76687172863038	3.89520350796273	3.76812513120347	3.80304601562868	3.86568771397127	-0.118702966748486	0.817868284498463	0.956835450074313
Merged-chr1-191278517-4	chr1	191277979	191278979	+	798.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39639.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	3.99398103823136	3.50935172381611	3.4501203460047	3.74010041513484	3.33537622382176	3.52386672655151	-0.473798323567037	0.449208768365277	0.807594795348397
Merged-chr1-67033426-4	chr1	67032896	67033896	+	902.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190984, intron 3 of 9)	intron (NM_001190984, intron 3 of 9)	5438.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	4.09631935751271	3.82627096810196	4.09392961966098	3.74473199972523	3.52969189705959	3.83061437427024	-0.994849004264601	0.0658441813168373	0.33487660293497
Merged-chr5-123933749-1	chr5	123933249	123934249	+	553.0	f1_c57bl6.idr	intron (NM_001134767, intron 1 of 12)	intron (NM_001134767, intron 1 of 12)	3060.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	3.33786753476144	3.58388197798546	3.45226270101721	3.19544739217902	3.39671874482058	3.29822168086365	-0.618898272540607	0.31371416393711	0.708132564679568
Merged-chr4-3650572-5	chr4	3650068	3651068	+	944.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5938.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.1030920932193	5.19212132402643	5.18985987210483	4.99405371110401	4.94838321168586	4.9445383484433	-0.422211177786483	0.244228414947293	0.641469632289595
Merged-chr17-27908192-3	chr17	27907697	27908697	+	626.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1045.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	6.79590276119755	6.6784718308966	6.5237975415908	6.5518036699404	6.68952998411762	6.60071036108572	-0.0941081946764138	0.719139014389978	0.927679628999601
Merged-chr12-103335988-2	chr12	103335488	103336488	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	20013.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	4.82207142246937	4.90309638604715	4.69414897580147	5.17831455659281	5.14588534206023	5.0330251843856	0.663910544830725	0.0789099596636976	0.371103822059399
Merged-chr1-127213701-3	chr1	127213242	127214242	+	950.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	8756.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.19682361439503	4.2150327108053	4.25751692439766	4.83586630571971	4.83881052886183	4.63727234162149	1.40269921855059	0.00109354916497636	0.0193107043547013
Merged-chr14-19968906-4	chr14	19968405	19969405	+	986.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	B1F|SINE|Alu	7788.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.17075406993705	7.31389953348986	7.06718387916369	7.3012586229801	7.31089190812826	7.1890319703898	0.115934287535395	0.624923034884517	0.89229679771207
Merged-chr11-70001257-2	chr11	70000757	70001757	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007888, intron 1 of 14)	intron (NM_007888, intron 1 of 14)	631.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	5.88400431169333	5.8279023907042	5.93091209799094	6.09279949705032	5.8276995427375	5.71251125744181	0.0236808918517587	0.939014421804758	0.986603666382121
Merged-chr19-46394028-2	chr19	46393528	46394528	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1707.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	3.77933739822702	3.46073617309917	3.57136438895383	3.8602352144439	3.90380949851268	3.46749526455277	0.510611902285171	0.385251597624508	0.76632598385057
Merged-chr1-152902872-4	chr1	152902364	152903364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-218.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	8.18455320181523	7.84422571171837	7.89155725040688	8.02929909475056	7.94422136782489	7.93989087235587	-0.019322647448977	0.93189279521306	0.984959488143389
Merged-chr12-86893901-4	chr12	86893407	86894407	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9093.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.08739428287308	7.14685267419408	7.1278471651012	7.44225353152739	7.76982796917047	7.36401090789276	0.630995605429962	0.0104369234379999	0.10350840589143
Merged-chr1-130717513-4	chr1	130717007	130718007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178691, exon 1 of 2)	exon (NM_178691, exon 1 of 2)	180.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	7.17682068774908	7.52591605441071	7.37087697177613	7.34950769421701	7.48825246220673	6.83637883056806	-0.148767782899177	0.598495846591115	0.880808927175713
Merged-chr19-36921844-3	chr19	36921345	36922345	+	850.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2246.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	2.93757571496122	2.6530960190145	2.82066138129337	3.08914429915811	3.0319788861372	3.2480416185994	1.50417985871267	0.038247112834769	0.242008675277575
Merged-chr6-113690051-2	chr6	113689551	113690551	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 10 of 11)	intron (NM_001113553, intron 10 of 11)	-6999.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.60263357461547	4.24814706791627	4.69625523226007	4.46161142832608	4.04477431792168	4.36254261487945	-0.587760851915633	0.220989554526553	0.61561513090473
Merged-chr1-136142884-4	chr1	136142372	136143372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	MIR|SINE|MIR	11482.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	8.27395487151809	7.90857865114848	7.94277080357728	8.34334897722545	8.44509580154362	7.90157748830964	0.284913978086424	0.265366985957067	0.663104836467744
Merged-chr3-88406368-2	chr3	88405868	88406868	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	4029.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	4.9845684698392	4.98766321619131	5.30826315600133	5.5669526968516	5.62363539627801	5.5186481644229	0.964314223846709	0.00558630476164319	0.0662899667151749
Merged-chr2-142610812-4	chr2	142610322	142611322	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	290642.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.60730033809645	4.6324765964252	4.63553065120674	4.55175188657846	4.46887722377489	4.7012915923294	-0.135908072545085	0.742869735336813	0.935368371900894
Merged-chr10-121582658-2	chr10	121582067	121583067	+	919.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	B3A|SINE|B2	4227.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	4.69036759146761	4.57829303545124	4.66774910304063	4.73992385895755	4.61599376055051	4.61255431290803	0.0306078736466013	0.939955448986376	0.986753310597155
Merged-chr6-114842727-2	chr6	114842227	114843227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79094.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.38272245089501	6.52652155700658	6.57201849655165	6.60142962058119	6.6708889323086	6.52740606120987	0.182138165009497	0.487229870821998	0.828373410665021
Merged-chr13-93997182-4	chr13	93996705	93997705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60591.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.45174785921627	5.77115333306442	5.30971148281784	5.20381226198452	5.20775010527357	5.06045253557868	-0.732294027695914	0.0429915417739683	0.26006290291769
Merged-chr9-64811148-4	chr9	64810666	64811666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 1 of 34)	CpG	155.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	7.52708843708777	7.23209918058823	7.22097779366143	7.27889992084567	7.2669337066576	6.91518296294892	-0.246601545716639	0.340292453449356	0.729995216732341
Merged-chr9-96537041-4	chr9	96536542	96537542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58367.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	6.28650442112461	6.66175860369934	6.41687702521269	6.32883735430843	6.2829086885895	6.56399165710712	-0.128861962203113	0.653876495799279	0.903558174250044
Merged-chr2-73029276-2	chr2	73028776	73029776	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-48830.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.00527823463009	3.77334906136418	3.87978579530421	4.03220951447077	3.77395446120205	3.79417143184326	-0.0564415503053006	0.914126510658531	0.980894573251353
Merged-chr15-100304848-4	chr15	100304417	100305417	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	100.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	6.40606328540045	6.4241069773775	6.42168646866978	6.52343063215439	6.67427844947857	6.42494257254363	0.220451804893501	0.407346934223509	0.781483992042557
Merged-chr1-152547167-2	chr1	152546667	152547667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	78050.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.0609832392876	3.85636065841301	4.43513890642403	4.02743837873525	4.36330377082906	4.6130429222474	0.595961393092589	0.256936525578598	0.654117440348305
Merged-chr11-78983133-4	chr11	78982607	78983607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1817.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	7.95048945162933	8.0513126539627	7.85165958304099	7.7314443119317	8.11100987471372	7.68016324678495	-0.130817570177922	0.587393274338756	0.875891047417763
Merged-chr7-143022637-2	chr7	143022089	143023089	+	802.166626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16930.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	5.73970792331895	5.1748958949347	5.55814140871428	5.6622902610124	5.71190215932656	5.98789277802152	0.511459854271114	0.151472896876658	0.518929380900567
Merged-chr8-122775577-2	chr8	122775077	122776077	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144932)	promoter-TSS (NM_144932)	91.0	NM_144932	257633.0	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	3.73760543108254	3.82529361094327	3.74031201521438	3.7157826610414	3.80854791638576	3.70474613602307	-0.0737839432826972	0.888928645256497	0.974207858658472
Merged-chr5-139466567-3	chr5	139466056	139467056	+	742.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6022.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	4.61815804379384	4.39428229669413	4.83904343262235	4.09601065256078	4.40707757168777	4.7655163578754	-0.439433506429403	0.364263745797557	0.749666877743191
Merged-chr10-121446025-4	chr10	121445525	121446525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	30225.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.66783447360099	4.48375986700157	4.70093856356508	4.54840720681035	4.8038223547981	4.64866320599914	0.146424084132918	0.725601365423061	0.929707128236285
Merged-chr7-44467975-4	chr7	44467474	44468474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205070)	promoter-TSS (NM_001205070)	-6.0	NM_001360604	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	5.21721338127742	5.43640819960004	5.20696345966303	5.31555631621387	4.9782799447787	5.4245731352457	-0.111493509652504	0.763799450871796	0.941828088296049
Merged-chr17-25579121-4	chr17	25578639	25579639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029624)	promoter-TSS (NM_029624)	-35.0	NM_029624	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	6.53783747144931	6.39377935756165	6.31240070258183	6.26066106926549	6.12230259542312	5.69515923067521	-0.601879458363633	0.0527199717310427	0.293780029989057
Merged-chr9-5309531-4	chr9	5309012	5310012	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	663.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	7.70361299872444	7.66130075653208	7.29453915223945	7.50307321527845	7.76373292811572	7.38666256676972	-0.0072775499212174	0.977261822773819	0.994771164142869
Merged-chr16-44190294-4	chr16	44189813	44190813	+	879.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	16916.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.6637836767024	5.79331826853888	5.87729971388066	5.8457487215449	6.02328318517254	5.98492886388671	0.31912652188383	0.292096968387794	0.689330051945222
Merged-chr5-146792347-4	chr5	146791863	146792863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	2593.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.15271774625036	6.48513371625947	6.30419024698329	6.66487283670214	6.39819954676983	6.28305732602675	0.226630954693376	0.436881501080308	0.799681606793859
Merged-chr8-13675807-3	chr8	13675372	13676372	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1715.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.80657865541243	8.18062514918055	7.9279418063882	7.81824680536152	8.33244381938926	7.87210263166166	0.0756388230788023	0.771052578826252	0.943565600102578
Merged-chr2-27504668-3	chr2	27504153	27505153	+	940.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10494.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.89093371095267	5.02356116812867	5.08065379245608	4.96725200062256	4.94138997261912	4.65225586136967	-0.274550426287501	0.482220926773092	0.825427202167635
Merged-chr5-123719525-2	chr5	123719025	123720025	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027494, exon 2 of 14)	exon (NM_027494, exon 2 of 14)	1519.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	3.79338283811593	3.69992010029885	3.7469731168599	4.01299311717887	3.79682207937089	3.53660302039896	0.179148086126888	0.746353319160791	0.936300236930265
Merged-chr9-45181916-4	chr9	45181421	45182421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-13845.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	6.62675699672026	6.71135587125308	6.88750250105901	6.98724284100457	7.02299804374043	7.07836444509414	0.447148087799934	0.0719832555284246	0.352328395647597
Merged-chr9-66114116-4	chr9	66113607	66114607	+	855.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10779.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	5.65205909728419	5.63397197956156	5.60600864152005	5.27193041235808	5.4371750432863	5.50067487252081	-0.433139123576011	0.184647916205109	0.568391247515618
Merged-chr18-34777542-6	chr18	34777071	34778071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	CpG	563.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	8.28819039567865	8.34365925375566	8.38749162894767	8.39487977765304	8.23724285653741	8.54518992592912	0.076596685160818	0.718020928505245	0.927249469209724
Merged-chr2-126934238-4	chr2	126933722	126934722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	-987.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	6.92850816993547	6.93867228160532	6.85091283182554	6.86075359247888	7.15797681207962	6.90930762558244	0.124695184181001	0.620697982021107	0.890303081264007
Merged-chr12-35046295-5	chr12	35045763	35046763	+	644.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-926.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.72856710998045	6.9614539767596	6.70896113365137	6.87728829933971	7.37962676494316	6.96493358390109	0.449405284788777	0.107023596547034	0.436615974773758
Merged-chr14-33247324-3	chr14	33246828	33247828	+	672.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30505.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	7.31589131404335	7.80008367121461	7.40041651331668	6.79422280570137	6.91624561060824	7.13856197851335	-0.861023395308741	0.0013746235717232	0.023139728536505
Merged-chr11-110967847-4	chr11	110967343	110968343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-190.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	7.51345563124277	7.63558845559694	7.03328425925129	7.54480513774736	7.85407766478735	7.27732039713266	0.234023499886604	0.417935137023793	0.788440971405969
Merged-chr4-155611507-3	chr4	155611014	155612014	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177186, intron 3 of 8)	intron (NM_177186, intron 3 of 8)	10098.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	3.59316130039207	3.57626131680837	3.55657210054451	3.66534879533465	3.27296273558512	3.82903998801044	0.0907141618164163	0.880244946296787	0.97248156422889
Merged-chr15-76817435-2	chr15	76816935	76817935	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	CpG	735.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	6.70662702203012	6.70778618835595	6.74112537244591	6.45621377933395	6.22062183545274	6.20421323098387	-0.673010908400483	0.011905742456867	0.11363775548692
Merged-chr14-55479011-7	chr14	55478521	55479521	+	948.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030686, exon 1 of 5)	exon (NM_030686, exon 1 of 5)	263.0	NM_030686	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	5.45218886697075	5.60001153496735	5.61243924768325	5.44547821229568	5.14913386843936	5.9124478126922	-0.0537990841281041	0.886620623245343	0.973794308941933
Merged-chr14-60444875-1	chr14	60444375	60445375	+	861.0	f1_balb.idr	Intergenic	RLTR40|LTR|ERVK	66589.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	3.49365874677822	3.25990413546616	3.50745774293353	3.54595320290967	3.47265560852932	3.82703774736689	0.705604701520284	0.235397889903782	0.631597709612866
Merged-chr2-164068466-2	chr2	164067966	164068966	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	2636.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	3.5721256673504	3.51249045932461	3.48253348668502	3.89116933171487	3.90240475918588	3.92619473336459	1.28464221407602	0.0180037417433836	0.150785640964616
Merged-chr15-35937422-2	chr15	35936922	35937922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053071, intron 1 of 3)	intron (NM_053071, intron 1 of 3)	824.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	4.88035512513725	4.92244764398665	5.00818854872124	5.16309416582455	4.96440844866561	4.89079591601286	0.173438812051191	0.645803089367004	0.900747249687508
Merged-chr11-105126402-4	chr11	105125900	105126900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-25.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	5.40747456075081	5.26884072102236	5.30223773921459	5.50917617830586	5.26700578527261	5.166121206075	-0.0052044384708018	0.988156900503276	0.99731652667245
Merged-chr7-120634420-1	chr7	120633920	120634920	+	548.0	f0_balb.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	-769.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	5.13921377294755	5.33075011769421	5.39772548122113	5.05648465423802	5.21219638843818	5.21750943608623	-0.253624399609001	0.476350665360861	0.822520021424582
Merged-chr7-44305304-4	chr7	44304798	44305798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009131, intron 3 of 3)	intron (NM_009131, intron 3 of 3)	1661.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	6.20977561306181	6.2006281714218	6.36498165166277	6.58895140610726	6.68509975034439	6.55116178950176	0.585726860134138	0.0277459820542274	0.198830801268517
Merged-chr16-91869806-4	chr16	91869320	91870320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	61810.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.95390073429328	7.85060675067387	7.58153546369927	7.68309942698683	7.74476238585001	7.61876273869691	-0.181035159352802	0.433284627027236	0.797786002648364
Merged-chr6-149141522-4	chr6	149141039	149142039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177101)	promoter-TSS (NM_177101)	26.0	NM_001252095	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	5.87754256566094	5.86429232967573	5.54544714647898	5.48616491584077	5.58206436134388	5.32448688883024	-0.561247950289718	0.0928187096935579	0.40593184043843
Merged-chr14-103016109-4	chr14	103015607	103016607	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	17696.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	3.92177138736182	3.73181996461397	3.83613567056601	3.91129956137018	4.0589244772282	3.85458216075912	0.370010777519388	0.472425383671307	0.820550293768681
Merged-chr4-126753607-4	chr4	126753177	126754177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011986)	promoter-TSS (NM_011986)	88.0	NM_001355412	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	7.12457053075094	7.52993531043088	7.46008270918579	7.2975651321523	7.26113324024969	7.23430378227458	-0.174132990941749	0.481901759107039	0.82522727772513
Merged-chr9-42306557-4	chr9	42306063	42307063	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42263.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	2.868843803459	2.88745252305338	3.06354579259191	3.00256581617705	2.90977323196553	3.01972297559754	0.179818725272715	0.791373235469204	0.949737938863565
Merged-chr9-105034168-4	chr9	105033666	105034666	+	993.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19102.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	5.65190642528307	5.92544044769934	5.87080979234047	5.09305089067697	5.12271216710977	5.71885417929293	-0.92769805626132	0.0123017721641031	0.116252794801896
Merged-chr1-120121675-2	chr1	120121175	120122175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007830)	promoter-TSS (NM_007830)	488.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	6.62186406694916	7.18840255764698	7.11594817879871	6.94479681931287	7.06470136545351	6.93806595775311	-0.0176678728014376	0.949456233880504	0.988195309248553
Merged-chr7-16229210-3	chr7	16228716	16229716	+	798.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7184.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	5.66741064590312	5.88048451303941	6.22909815675945	5.58560122973458	5.69942540091947	5.66720915956424	-0.507801003089072	0.128193578263429	0.478822608975328
Merged-chr10-30678285-4	chr10	30677776	30678776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-22409.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.53494988906733	5.30680221587856	5.57793372751691	5.45851904459694	5.64897422873918	5.55736530818229	0.168684469769808	0.612679101938704	0.886888853880768
Merged-chr10-95676603-2	chr10	95676103	95677103	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-112457.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	2.8238443829569	2.68505997530281	2.76143529615506	2.73766149053893	2.51566442965813	2.89446805493427	-0.205027907434619	0.787535263914651	0.94877064431094
Merged-chr7-135602464-4	chr7	135601943	135602943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-3385.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.14537071678231	5.05876515750785	4.98813356467575	4.65095876878662	4.502622828079	4.58618399080204	-1.1226975088278	0.00434081347994125	0.0553463696044977
Merged-chr16-78264758-3	chr16	78264270	78265270	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9316.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	6.31975737726308	6.59046126452037	6.02026918645617	6.37081268894897	6.46943215732171	5.59877899314227	-0.204600585848288	0.582080580130084	0.873508337816738
Merged-chr12-76377335-4	chr12	76376830	76377830	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7064.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	5.67448681914428	5.46437444083631	5.67049792631544	6.35323190374593	6.36033627191902	6.41612363800287	1.34479856643773	5.01056880413416e-06	0.000221883666340817
Merged-chr2-164443223-4	chr2	164442705	164443705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011521)	promoter-TSS (NM_011521)	-17.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	5.13978008964906	4.88475281604635	5.0861535275995	5.07831789631026	4.91512508335339	5.18274687947009	0.0329539563368961	0.93030510802195	0.984485771257693
Merged-chr11-57801540-4	chr11	57801039	57802039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	-72.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	4.86709648176461	4.82745360525623	5.33252503366902	4.78458360536442	4.46177178235777	4.62736904726166	-0.885682347970234	0.0390678838391837	0.245142822245998
Merged-chr14-77841670-2	chr14	77841171	77842171	+	668.875	f0_c57.idr|f1_c57bl6.idr	intron (NM_025384, intron 4 of 5)	intron (NM_025384, intron 4 of 5)	33246.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.281149995945	3.2723960864021	3.46785659360721	4.07398613675726	3.95551970877385	4.18780435631692	2.66117917030854	8.58668466424358e-06	0.000350579419795083
Merged-chr19-29708255-4	chr19	29707766	29708766	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029993)	TTS (NM_029993)	10325.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	2.89112945465484	2.90188947056081	2.90000770949634	2.95750676564068	2.79075694271773	2.97271144147894	0.0358383131124961	0.958658482649125	0.99015359851262
Merged-chr16-17722774-4	chr16	17722218	17723218	+	987.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	CpG	182.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	9.16670861932727	9.42160955518428	8.90243676914904	9.01772115587186	9.14843484988383	8.67713704493478	-0.296548902731732	0.226912802305632	0.621890618706186
Merged-chr16-87714357-2	chr16	87713857	87714857	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	15403.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.62206758596319	3.4356623291217	3.25229137519025	3.31020493600553	3.26539830851424	3.60261639061908	-0.213400100323104	0.732733636031901	0.931858722659821
Merged-chr9-107545797-3	chr9	107545299	107546299	+	835.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018879)	TTS (NM_018879)	-1511.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	2.65238251915607	2.50854548680007	2.65267648759433	2.90680614266906	2.46943809234741	2.91040440851165	0.909216106352126	0.254730752765521	0.651754308411513
Merged-chr10-25366907-4	chr10	25366407	25367407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	7109.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	6.72005961405718	6.66801777004167	6.56800882810128	6.60303959117466	6.77095306164313	6.14006422866463	-0.172587724625449	0.560572483398741	0.865261302076164
Merged-chr13-74029209-4	chr13	74028719	74029719	+	781.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	19800.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.3375979669376	3.29898577934904	3.53347077810579	3.24889363396649	2.87458633928466	3.04308930786789	-1.41072994254991	0.0389544783912856	0.244739069615078
Merged-chr15-100631675-4	chr15	100631186	100632186	+	887.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3873.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	4.71404801504497	4.72865113663352	4.635054751457	4.58864837438902	4.56432227673688	4.74031295393653	-0.166983985467247	0.68088799184672	0.914504446345046
Merged-chr12-100006040-4	chr12	100005537	100006537	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Charlie2b|DNA|hAT-Charlie	41538.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.98479850624339	7.02782734016006	6.75400421149488	6.97724562693628	7.2126601251936	6.60689964126023	0.0554506797540673	0.844840316434912	0.963760118842549
Merged-chr9-21022033-4	chr9	21021519	21022519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 2 of 6)	intron (NM_010493, intron 2 of 6)	6079.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	3.5536078879844	3.38400145501822	3.39834726239805	3.33394538069156	3.20794716878953	3.82158463939589	0.0939383584155902	0.883042582648104	0.973347392063704
Merged-chr10-30723191-4	chr10	30722698	30723698	+	789.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	ID4|SINE|ID	-67331.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.86940168907602	3.96194759380069	3.86300755108753	3.9865590459593	3.99973608854454	4.30053884800661	0.576430547851309	0.252578952192741	0.649948429823529
Merged-chr10-75513375-4	chr10	75512879	75513879	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4002.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	6.58054730496933	6.50462425867066	6.14062516387712	6.87332494418844	6.83290273040418	6.73710007266339	0.604694024631166	0.0290141081269225	0.204504675045313
Merged-chr13-58402393-7	chr13	58401889	58402889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301343)	promoter-TSS (NM_001301343)	123.0	NR_153504	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	8.6326587804663	8.64375749851303	8.40524641508976	8.53863377908502	8.53745981101712	8.48872740444762	-0.0649383048799951	0.751334616291597	0.937835477301438
Merged-chr19-18620022-4	chr19	18619500	18620500	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11813.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.41864335398427	5.490659233225	5.22878541680837	5.50857510092837	5.42550667912327	5.48222949645456	0.14875447123237	0.658026751265658	0.904920006599558
Merged-chr11-100848218-4	chr11	100847677	100848677	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	2408.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	6.17768421221922	6.22304135224713	6.03943886578088	6.47445655542615	6.73067836113412	6.29975638936275	0.609518840780347	0.0353970752199349	0.230982129592808
Merged-chr15-100664478-2	chr15	100663978	100664978	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5022.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.22402398437069	5.24667974613513	5.46549896410649	5.15964902509061	4.94252851236414	5.44499776169	-0.254463339660886	0.496870303235333	0.833355041868306
Merged-chr11-77439267-2	chr11	77438767	77439767	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-24646.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	3.28503952591871	3.43441382558084	3.86972728113771	3.4838664856171	3.28335462591868	3.55502559919366	-0.378741181952974	0.546633770829494	0.858875010445646
Merged-chr14-50991313-4	chr14	50990827	50991827	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-16424.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	3.33637852760834	3.56676643647844	3.12385685206344	3.673458994617	3.80187425998144	3.51194160000672	1.11411203591035	0.0855638330586772	0.387334498729472
Merged-chr7-101566848-4	chr7	101566354	101567354	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-5989.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	3.81094074893509	3.71486066921244	3.55578461356662	3.67958122001403	3.47730412882333	3.68166297958884	-0.319560620651964	0.567906284339294	0.868402679242594
Merged-chr11-51999376-2	chr11	51998876	51999876	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	1090.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	5.66243104301078	5.3398915319047	5.08458338555122	5.31029193517972	5.24347564795199	5.11392652080511	-0.331189994762371	0.376686875183162	0.759336465825071
Merged-chr15-86204128-4	chr15	86203661	86204661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10298.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.22663188292115	7.04426075661376	7.24282500077219	7.03081447377381	7.38100233832118	7.30023248887023	0.115530346842597	0.643149126029495	0.899659932869141
Merged-chr10-88802445-4	chr10	88801937	88802937	+	974.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 18 of 61)	MIR|SINE|MIR	24377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	3.83788439644759	4.09247655150899	3.71622920004175	3.66640696703081	3.6148958339422	3.83914200021658	-0.634840330334392	0.244695525061978	0.642068217632906
Merged-chr17-71301510-4	chr17	71301016	71302016	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	9495.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.62621951754129	6.54156398084753	6.79429983224911	6.62688771890503	6.68095412112781	6.58409337191503	-0.0257859082174561	0.920865692975314	0.982463724790289
Merged-chr7-100496487-2	chr7	100495987	100496987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	3129.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	6.97436997422488	6.73591956410717	6.71351087746163	6.45004994156812	6.66673306386364	6.90480552557893	-0.213426820268528	0.438980321026168	0.800937323779458
Merged-chr13-81402581-3	chr13	81402097	81403097	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	L1MDa|LINE|L1	230547.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	5.52325327230884	5.79573939681838	5.86046664985601	5.75970763067433	5.81794252399361	5.92146119012194	0.185064186270302	0.558245205968983	0.864595191540967
Merged-chr11-44526861-4	chr11	44526358	44527358	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	7481.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.51007992485282	5.39404103678859	5.06667543186521	6.43614789669026	6.42701519868198	5.93058243684742	1.67681540972334	2.03861850848915e-06	0.00010127126498768
Merged-chr9-114743647-3	chr9	114743148	114744148	+	932.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12445.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	6.34275629072225	6.47234043425231	6.38572098851442	6.71980070516059	6.82855525099432	6.70734385363809	0.564432064786683	0.0290725334192693	0.204762769658927
Merged-chr13-6548140-4	chr13	6547654	6548654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-3.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	5.81487870798254	5.93562239887769	5.93488387111155	5.78653788587228	5.87287788896669	5.6932014523329	-0.179837627666147	0.552927397951864	0.861983853430146
Merged-chr7-19506529-4	chr7	19506006	19507006	+	914.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177692, exon 2 of 2)	3' UTR (NM_177692, exon 2 of 2)	1825.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	5.24513415825618	5.07792310799574	5.49413954366711	5.37987219571581	5.53544825363189	5.38336946261103	0.333294531702852	0.345638333819265	0.734044780000853
Merged-chr4-8962473-2	chr4	8961973	8962973	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	211149.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.343119860821	2.42468169264017	2.52211286211159	2.56820778458988	2.60187865453007	2.71944632082764	1.21337334857514	0.128082683098881	1
Merged-chr7-43656009-2	chr7	43655509	43656509	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	4152.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	4.24976744537359	4.31689490637144	4.63520838178016	4.41310530029311	4.15429411216958	4.73577778936164	0.106354494762375	0.825476049722121	0.958821343666982
Merged-chr11-86745758-4	chr11	86745254	86746254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11813.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	7.00674366429911	6.91054608297909	6.95693737932233	6.70118925764644	7.14749701009805	7.041671500814	0.0346763705435315	0.89482062827808	0.975605163103887
Merged-chr16-70313194-2	chr16	70312694	70313694	+	864.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028803)	promoter-TSS (NM_028803)	-755.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.83584267283757	4.27365531187997	3.83079152583768	4.10193919693707	4.20732154213527	3.90278966858049	0.22112181110866	0.678564077325748	0.913498554171186
Merged-chr13-95955673-4	chr13	95955174	95956174	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-63752.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.89870365547237	4.67608864130595	4.70567449644826	4.46266562593845	4.58680839183017	4.56885791771792	-0.535678590987368	0.195074714336555	0.582787221560878
Merged-chr13-112386717-4	chr13	112386202	112387202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77368.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.09952499272354	3.97708808158732	3.78669243230126	4.13783469913659	4.49434449821847	4.26525278543176	0.969180364466634	0.0546142059286991	0.300154481302193
Merged-chr5-135611896-1	chr5	135611396	135612396	+	557.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-20758.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.13469357540825	4.47136045960154	4.11780608973222	3.97035573829654	3.93836685319347	3.82609782052282	-0.990618537120229	0.0501093449038317	0.28503543688529
Merged-chr18-20736029-4	chr18	20735548	20736548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10356.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.93450312871121	6.93480223852134	6.91494377883195	6.79161474079634	7.23236754786517	6.94491519414812	0.127176531385776	0.62653797729635	0.892916235446326
Merged-chr7-104446146-4	chr7	104445649	104446649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-24.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	7.47653510821712	7.70363655892475	7.3004421441326	7.54601427364138	7.56494815113291	7.4024872783663	-0.00309403747693209	0.989789182517034	0.997611022725407
Merged-chr11-8630028-4	chr11	8629543	8630543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	34492.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.90441484693781	5.7073002499498	6.29329228502276	5.85762591817625	5.68524691685917	6.12433417276508	-0.155464816712658	0.649163014676887	0.902118776529041
Merged-chr19-4151148-2	chr19	4150648	4151648	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011778, intron 6 of 10)	intron (NM_011778, intron 6 of 10)	2485.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	3.98600549368701	4.01845356639684	5.06186098333848	4.10374900690301	4.05649217476122	4.55374676661264	-0.508748510795638	0.394987501475481	0.772579826044138
Merged-chr14-121346732-4	chr14	121346219	121347219	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	32511.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.36073536393205	3.47566018958852	3.4481956893858	3.4377856863208	2.97874626340547	3.5189524598765	-0.386250458459182	0.558950004485749	0.86489961641779
Merged-chr2-150136073-1	chr2	150135573	150136573	+	550.0	f1_c57bl6.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	605.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	6.02485169886611	6.35418170026064	6.20475477897575	6.18177300191085	6.3011229381917	5.84246134092067	-0.11244505088023	0.717005915687827	0.926979087819795
Merged-chr12-105795093-3	chr12	105794590	105795590	+	767.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	10393.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.24106951396476	4.62471788648814	4.58370514718592	4.37198009680844	4.25712056083713	4.31342739876842	-0.462430497594335	0.310064114282706	0.705645610777183
Merged-chr16-94312787-4	chr16	94312283	94313283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	780.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	8.80870182076446	9.00126192033639	8.19575473455454	8.64518381952218	8.97527660557323	8.10315055612435	-0.120027657044579	0.702416860633946	0.921908665861083
Merged-chr8-119827335-8	chr8	119826839	119827839	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13240.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.60987222617359	7.19236416476041	7.34624930426236	7.52080363442472	7.57607924594895	7.38131748036183	0.150686629439558	0.542595218160796	0.857318248006765
Merged-chr4-128666021-2	chr4	128665521	128666521	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11319.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.54576297313293	6.58612589053188	6.55781575839845	5.83330005672183	6.01938148629778	6.10228937067179	-0.961350804906122	0.000568006564199963	0.0116039013488707
Merged-chr14-55796422-2	chr14	55795922	55796922	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7565.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	2.56613134151051	2.74478805054278	2.87642095409621	2.72369998699872	2.4258011236191	2.64670095038354	-0.719350618713508	0.364194239087961	0.749650560212523
Merged-chr9-108999281-4	chr9	108998795	108999795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	7393.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	6.60979737809459	6.37337193382142	6.90234282672067	6.68884106576271	6.83774063233296	6.63152831139295	0.144533467561087	0.609514807157219	0.885243896492256
Merged-chr13-108043749-1	chr13	108043249	108044249	+	590.0	f0_balb.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-725.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	6.66826273170576	6.78258087174397	6.92698251542333	7.14464737512241	7.25564647987599	7.39890717309455	0.72548554683732	0.00350142965405158	0.0471740541862571
Merged-chr9-104271884-4	chr9	104271365	104272365	+	941.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8935.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.06787105290569	6.18219210984409	6.41833040419965	6.3209566389003	6.47489834685307	6.57968715794356	0.393442109432347	0.167099909276516	0.542760172575035
Merged-chr11-116624857-2	chr11	116624347	116625347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-595.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.80644167487296	4.46335161728544	5.14927871128265	4.86815761743376	4.81877882854933	4.88322526734291	0.0703933466739067	0.870089134107713	0.969998326624549
Merged-chr5-76974731-5	chr5	76974323	76975323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025691, exon 1 of 19)	exon (NM_025691, exon 1 of 19)	122.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	7.26885395370909	7.05236643663492	7.03728326969853	7.17999521115678	7.01823055581962	6.86836883869166	-0.1433992418675	0.568864149407843	0.868767898077656
Merged-chr2-164939254-2	chr2	164938754	164939754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-8965.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	3.1066314191695	2.6106620631012	2.86738616152824	3.32264557431532	2.92862757849939	3.29958913709938	1.41155030906186	0.0729737352824144	0.354963086950727
Merged-chr10-62311596-4	chr10	62311113	62312113	+	937.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 5 of 21)	intron (NM_010438, intron 5 of 21)	28808.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	3.8167934349521	3.90718590840277	4.12798571062297	4.11434913220044	4.29354176008103	4.2840937431987	0.827117524615068	0.0912003244167666	0.401858647164494
Merged-chr9-37245718-4	chr9	37245197	37246197	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	10041.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	5.86734509463651	5.7043670019406	5.83825220613141	5.26106106408732	5.24331911810669	5.35636855858626	-0.98912453923969	0.00238182295191591	0.035321105717879
Merged-chr6-35538917-2	chr6	35538417	35539417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	971.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	5.63446587052387	6.28936036958009	6.01698581723474	6.01613544900206	5.76467674475013	6.37394263934439	0.0946234153924672	0.791960296640134	0.949839887482488
Merged-chr12-65076829-2	chr12	65076329	65077329	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 1 of 22)	B1F1|SINE|Alu	1223.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	2.90054192563911	2.69972338827599	2.81113901278161	2.73906480485977	2.62164543636747	3.00123428926221	-0.0811846848795224	0.913265295978625	0.980560320145079
Merged-chr2-71863711-2	chr2	71863220	71864220	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-9504.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	2.21693140126382	2.40866747743503	2.36777601581182	2.61634045004036	2.33274924001598	2.63503709778759	1.23772845113697	0.147545984607981	1
Merged-chr17-29009380-4	chr17	29008858	29009858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1363.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	6.33845707540496	6.28236446362794	6.44486676411593	6.27941420593135	6.22193104196094	6.60459780038165	0.0261647501730512	0.926813416555044	0.983578869536024
Merged-chr12-41350031-4	chr12	41349539	41350539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	136018.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	5.62976405817152	6.16694267478925	5.97267634690609	5.82642058156135	6.1167640668771	6.09991401339047	0.134832158324411	0.681860445410992	0.914901722830768
Merged-chr15-66769880-2	chr15	66769380	66770380	+	936.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	61949.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.27777795747849	3.37552632397022	3.33505070747962	3.1752908821999	3.04696501150995	3.56218566439978	-0.234986744631426	0.718372477235081	0.927337756147827
Merged-chr16-58480449-3	chr16	58479865	58480865	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	43061.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.85789030408389	5.75223191862193	6.00875472770716	5.49566862220315	5.34234477749189	5.87009912900286	-0.546789703970022	0.107365472403807	0.437431632364293
Merged-chr12-95744660-2	chr12	95744157	95745157	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	52431.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	4.23757960682365	3.89545969411673	3.94259354628691	4.21705645094447	4.10276374638123	4.25196109049507	0.422971199325508	0.392322071560254	0.771113878451968
Merged-chr19-34231751-3	chr19	34231226	34232226	+	727.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360720)	promoter-TSS (NM_001360720)	-899.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.15763823778592	4.40669057955182	4.32439755677373	4.38952642233519	4.51862577536811	4.47835292124712	0.425226577887557	0.339546304974721	0.729313720985741
Merged-chr9-107546281-1	chr9	107545781	107546781	+	932.0	f1_c57bl6.idr	TTS (NM_018879)	TTS (NM_018879)	-1029.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	2.78739045319211	2.64120278057345	2.79783158098485	3.22663215106193	2.63201138995344	3.05567450740156	1.22417571230288	0.113702725562208	0.450458333979919
Merged-chr9-65541858-4	chr9	65541360	65542360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38227.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	9.07035419373959	9.04493563468719	8.42507820606659	8.70771676556424	9.16022930211267	8.30854687769447	-0.142071280705981	0.637221828317233	0.897338937840938
Merged-chr13-21783395-4	chr13	21782893	21783893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	4.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	6.92612637415593	7.4174277812603	7.08495010417189	7.1748512034768	7.77312311077749	7.27936458929096	0.417640980051499	0.154831349508733	0.524112919134617
Merged-chr5-30651633-4	chr5	30651130	30652130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	3691.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	8.11443662203781	8.53610128261692	8.17569238624034	7.83975914725795	7.94855282752749	7.44911700430168	-0.737145636508005	0.00445565685665609	0.0564559609758855
Merged-chr12-72085668-4	chr12	72085165	72086165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	-174.0	NM_001205067	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	6.59159378424833	6.53023186517951	6.72940257231095	7.00087379625359	6.88416312690548	6.47819394328816	0.316915944445817	0.255623124596204	0.652679746869433
Merged-chr6-125272262-3	chr6	125271752	125272752	+	754.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6727.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	5.25843422198025	4.74044780882546	4.71048286022233	5.3982832702593	5.30368510796024	4.98422859096746	0.639563328269591	0.126194385072902	0.475052622314112
Merged-chr14-52133814-4	chr14	52133306	52134306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023879, exon 10 of 25)	exon (NM_023879, exon 10 of 25)	22903.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	5.09659644186315	4.89718805428275	5.20337729035604	4.96022427520654	5.21346989516409	5.46906150670861	0.328495267123672	0.392539361394477	0.771179872929924
Merged-chr8-75089736-4	chr8	75089237	75090237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3881.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.37647966614476	7.34171021880088	7.27826753784209	7.23296758222253	7.59522455939867	7.20394046084453	0.0478234524323975	0.847419059957654	0.964318271116593
Merged-chr13-37784420-3	chr13	37783924	37784924	+	681.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41614.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.45103664893604	3.43328992965391	3.47982915391673	3.2570513284686	3.05582701106327	3.38896003001852	-0.89519374217814	0.151615223823926	0.519079091424247
Merged-chr1-190978727-2	chr1	190978227	190979227	+	743.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144879, exon 1 of 8)	5' UTR (NM_144879, exon 1 of 8)	271.0	NM_144879	226841.0	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	2.68177763775149	2.45536088657613	2.38283469876441	2.56347601875765	2.41291116375968	2.65363754462731	0.158521502706685	0.84653555493084	1
Merged-chr13-99323316-2	chr13	99322844	99323844	+	829.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	Lx8|LINE|L1	21334.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.79628369447374	5.63334455870043	5.2896140139164	5.62917172050266	5.79612448039258	5.48566546185967	0.0920511708182286	0.791428765647369	0.949737938863565
Merged-chr6-38556385-2	chr6	38555885	38556885	+	574.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001331223, exon 1 of 13)	5' UTR (NM_001331223, exon 1 of 13)	662.0	NM_001331223	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	3.23042009856747	3.32194875940367	2.87103920032979	3.14137096033148	3.10621186951647	3.47736549835395	0.370323229459093	0.605794636833095	0.883650517874066
Merged-chr7-114347170-4	chr7	114346665	114347665	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 1 of 3)	intron (NR_029437, intron 1 of 3)	67996.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	3.28532127478429	2.969173344407	3.11826258718921	2.83012257749555	3.1406925698871	2.81799167415034	-0.835054854058248	0.257809419965334	0.655300508619143
Merged-chr2-164075239-4	chr2	164074743	164075743	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	1065.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	5.59713303177221	5.63904753687439	5.71613036830492	5.86475727076614	5.85215963238063	5.75197422387349	0.328361841824393	0.283740286510216	0.681452732636412
Merged-chr19-16029541-7	chr19	16029044	16030044	+	955.839294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44469.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	6.91645171615544	7.17997519922983	6.7609255763545	7.2306383910109	7.38262936674198	7.22267206283354	0.466658395153303	0.0687771817168072	0.343101021477383
Merged-chr1-64573385-3	chr1	64572889	64573889	+	824.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 4 of 6)	intron (NM_001037726, intron 4 of 6)	40585.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.97341945011777	5.22875659454069	5.49058217236996	5.29563747827841	5.70338164500493	5.37944989872535	0.478815446121509	0.203708636628911	0.593868272602427
Merged-chr11-46795817-4	chr11	46795307	46796307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14992.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.4418528828199	4.12880123602668	4.41141394418202	4.52658718696102	4.46376119750841	4.30032025705472	0.277723028223176	0.541466065717002	0.856839001867185
Merged-chr19-6342215-2	chr19	6341715	6342715	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_117093, intron 3 of 30)	intron (NR_117093, intron 3 of 30)	1055.0	NR_117093	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	3.42712957095983	3.03099308198941	3.47703663531812	3.20696951644589	3.36677416543127	3.15518494598963	-0.291304157412966	0.660801631038949	0.906145159206461
Merged-chr12-83859551-2	chr12	83859051	83860051	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	ORR1A2-int|LTR|ERVL-MaLR	-17193.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	4.56432768407859	4.4937861468217	4.77434911897403	4.6650043733506	4.655492600046	5.04237067668964	0.425593926237997	0.315027897437055	0.709395445939035
Merged-chr10-83638942-2	chr10	83638442	83639442	+	832.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	ORR1F|LTR|ERVL-MaLR	9722.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	4.2567649570002	4.24256538200623	4.31077001868036	3.83073910923952	3.67958282134863	4.29391687073679	-0.930715188219109	0.0784875613413124	0.369953719146203
Merged-chr15-94590871-2	chr15	94590371	94591371	+	666.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	6.36620647370657	7.16819031088089	7.09727431167034	6.96126986455389	7.13111582926639	7.43788405513736	0.39731421652528	0.218975330224005	0.613128894826908
Merged-chr12-40223978-4	chr12	40223479	40224479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013562)	promoter-TSS (NM_013562)	615.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	8.14294058875744	8.21461463892825	7.15171199972471	7.73872892961585	7.8992067146091	7.01707778975483	-0.450959060555032	0.450595289889857	0.808443910792592
Merged-chr3-40948754-2	chr3	40948254	40949254	+	803.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1877.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	2.5378232096988	2.57271244412803	2.76847568215869	2.63993482525466	2.73877870764075	2.7811883726741	0.525795930761915	0.484606038580036	1
Merged-chr1-172027387-4	chr1	172026873	172027873	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033509)	promoter-TSS (NM_033509)	-78.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	3.42193787111805	3.35017692199146	3.24192870265913	2.89319447655606	2.94533168635069	2.8125416311378	-2.13142382836294	0.00346802539282596	0.0468920138524059
Merged-chr13-64432791-1	chr13	64432291	64433291	+	1000.0	f0_c57.idr	intron (NM_053180, intron 1 of 7)	CpG	238.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	6.07753693641537	6.17712642266577	5.90636032623162	5.97070587937413	5.89064707389261	5.84204198407749	-0.283039067358627	0.340428535886315	0.730155370899045
Merged-chr14-79552984-3	chr14	79552481	79553481	+	857.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	L1_Mur2|LINE|L1	-34679.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	4.16623571432456	4.23329950575571	4.10922559358824	4.26266937600196	4.45575745120364	4.40679258242783	0.550821424320288	0.22731958424244	0.622402368069924
Merged-chr12-75689000-8	chr12	75688344	75689344	+	772.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-19307.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	5.59186949634608	5.62183382506996	5.95470176705865	5.75496702322389	5.72831779972052	5.53286023474702	-0.0718722211139314	0.826517120495892	0.959136713258354
Merged-chr8-119841614-2	chr8	119841114	119842114	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.28003459248505	2.87422133854413	3.29958703254397	3.17239574942524	2.86114078318099	3.57403338235277	0.280168136408802	0.705664824273257	0.922834459892351
Merged-chr9-61024917-4	chr9	61024410	61025410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7841.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.99538023845317	3.96185489440447	3.99082433313636	3.96404879264402	4.18172500104083	3.68583250781657	-0.027250390781238	0.959009454039909	0.990174309444982
Merged-chr12-3297806-4	chr12	3297266	3298266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B1_Mm|SINE|Alu	12203.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	6.21055894032932	6.54443592268989	6.1913061756025	6.56865788538955	6.64949432713728	6.59582297828334	0.438510565625634	0.117058002497726	0.456855641267859
Merged-chr19-37443755-2	chr19	37443254	37444254	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8913.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	3.52432926827171	3.72208414065494	3.72564005356376	3.74576642518361	3.41762663901715	3.47216476184747	-0.371656295852969	0.519849303046618	0.846048097455962
Merged-chr4-109118065-4	chr4	109117550	109118550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134791)	promoter-TSS (NM_001134791)	-14.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	7.38419806674272	7.5562652077011	7.60213977410846	7.49111088268534	7.75352108826177	7.64969761899614	0.180354266546593	0.436526858946563	0.799492139444127
Merged-chr3-27984585-4	chr3	27984102	27985102	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	431.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	6.68970538448915	6.75296282736538	6.55923705034946	6.81141193035402	6.89578230400729	6.65281891853537	0.192215807152291	0.456296930592539	0.811531402057786
Merged-chr15-89374055-4	chr15	89373523	89374523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111288)	promoter-TSS (NM_001111288)	-205.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	7.15020861056779	7.4970694784431	7.4735195620107	7.38814917503568	7.16185832705032	6.95759553149473	-0.289799167362913	0.26889269624322	0.666052139467904
Merged-chr9-104581762-3	chr9	104581256	104582256	+	855.783325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	12273.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.53224816190131	4.19752885902177	3.80519591365833	3.33180755228942	3.26071995520267	3.31879251232031	-2.11849360109512	0.000954185225619719	0.017365670221646
Merged-chr3-15428103-4	chr3	15427582	15428582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	5.42628298760308	5.75028327108494	5.31927669471448	5.43764579341051	5.35621021241075	5.53482914918232	-0.161054193477433	0.643556689859641	0.899878418502714
Merged-chr11-83656906-2	chr11	83656406	83657406	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5678.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	4.52585735559995	4.32629446569331	4.48376382330056	4.04137340986183	4.00979776818869	4.42849157759	-0.769232988472908	0.106403051544098	0.435515033345531
Merged-chr14-33398703-2	chr14	33398203	33399203	+	836.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12321.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	4.78274206594178	4.73805661546201	4.50969250208688	5.21469524711254	5.16750568656028	4.91713788820441	0.925037400261815	0.020154372556298	0.16231175296791
Merged-chr7-114415932-6	chr7	114415482	114416482	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029437)	promoter-TSS (NR_029437)	728.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	4.34542664858198	4.06355202375867	4.04645474038516	3.52021535525596	3.3129657824432	3.76696104277296	-2.13706852173395	0.000269575990295294	0.00638147339985514
Merged-chr6-29797372-2	chr6	29796872	29797872	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	MLT1G3|LTR|ERVL-MaLR	28929.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	3.55906848936986	3.30923658663482	3.43549658660324	3.60228745026546	3.45897582258352	3.6149364709587	0.431325796254834	0.459438358252694	0.813650156404876
Merged-chr6-84058792-3	chr6	84058296	84059296	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	39410.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	3.72171826263612	3.8395267205101	3.66874416610428	3.4913629938582	3.77941978076758	3.45774950122868	-0.517705345849382	0.369178152178487	0.753885996270167
Merged-chr2-35506833-4	chr2	35506330	35507330	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45381.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.11547585076171	5.77483540763949	5.91320745566306	5.1198636588115	5.01416208751849	5.1557522225851	-1.63551817632136	1.59483714474331e-06	8.13928403593892e-05
Merged-chr11-61843647-3	chr11	61843136	61844136	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 3 of 26)	intron (NM_013881, intron 3 of 26)	11456.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	4.83564095894737	4.42287331841275	4.84699502699757	4.75157770496941	4.55068299658756	5.13993948233429	0.260641977582202	0.561747212998359	0.865571255453378
Merged-chr12-72361154-2	chr12	72360654	72361654	+	722.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	47900.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.36418467937278	3.1895514603451	3.31298142031713	3.39321983605722	3.48563828490846	3.74886338910205	0.970319183337056	0.110740380490507	0.444764337850723
Merged-chr4-83303667-4	chr4	83303149	83304149	+	923.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	20540.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.14630035901877	5.37576041334252	4.99840307528286	5.32018090435695	5.45514125146016	5.33981488838956	0.36381518992623	0.31123810947563	0.706465219571547
Merged-chr10-82863453-4	chr10	82862949	82863949	+	690.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	3108.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	3.58031747805716	3.44159562067943	3.18652675147269	3.48918667668142	3.69840791568473	3.55838206667243	0.606786097061584	0.324823386483227	0.717739181095052
Merged-chr6-51466338-3	chr6	51465841	51466841	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182650, exon 5 of 10)	exon (NM_182650, exon 5 of 10)	3553.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	3.55426374155244	3.46505895516137	3.28788449196015	3.46278928227106	3.5498229726332	3.41999646005652	0.13258331347599	0.823146253864373	0.958214218900685
Merged-chr2-129186355-4	chr2	129185817	129186817	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5644.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	3.8431401932634	3.33799767283102	3.66692149551057	4.02349390484288	3.6135043148178	3.89182633754835	0.708436100071051	0.23435689006283	0.630452522567377
Merged-chr1-9945345-4	chr1	9944852	9945852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1234.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	5.10141689651942	5.058562690403	4.92144835488227	5.54215880031603	5.49526666485627	5.57237882646544	0.994021843651389	0.00423700995599142	0.0543057801013762
Merged-chr13-41788251-3	chr13	41787744	41788744	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	59244.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	4.45323548323432	4.49579945563436	4.24959612314953	4.30264678217629	4.28840281212142	4.22318904812355	-0.361501868072445	0.422117749507239	0.79098189652931
Merged-chr15-100668160-1	chr15	100667660	100668660	+	625.0	f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	1340.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.29632274751275	5.06814442360622	5.54622536674889	5.63212090342282	5.30296210111143	5.55430297364304	0.374263008257284	0.303136955530904	0.69985349451501
Merged-chr12-51844221-1	chr12	51843721	51844721	+	749.5	f0_balb.idr	Intergenic	Intergenic	-14685.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	6.28442683279094	6.56244845261802	5.87998141701749	5.58478964092445	5.81184313662686	5.40856404136909	-1.14643590394681	0.00109410562418683	0.0193164313128237
Merged-chr8-117498454-6	chr8	117498001	117499001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	CpG	226.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	7.09028654271088	7.19602982910401	6.96841309768421	7.08573780733071	7.19295141724501	7.08040636535219	0.0451781535312339	0.850852533892067	0.964981271430729
Merged-chr5-143509961-3	chr5	143509475	143510475	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	18018.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	5.32756113787567	5.43784568724668	5.28700065228018	5.2532682057805	4.88366231613732	4.89104233824144	-0.685152955143508	0.0652617018514048	0.333024389037881
Merged-chr8-105172197-4	chr8	105171677	105172677	+	895.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161456, intron 2 of 4)	intron (NM_001161456, intron 2 of 4)	1503.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	5.70589055471102	5.77559316930579	6.06065168473368	5.90610620339155	6.02481595149454	6.33444501817304	0.430453568807605	0.176701014279694	0.557203850236283
Merged-chr11-106073942-2	chr11	106073442	106074442	+	733.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027346)	TTS (NM_027346)	7835.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	3.20743602009092	3.06089271374802	3.41589697515061	3.4446056450543	3.24997590613852	3.5890061272366	0.792630195979004	0.212909450889523	0.605522425047523
Merged-chr4-109105399-2	chr4	109104899	109105899	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133885, intron 4 of 22)	intron (NM_133885, intron 4 of 22)	12637.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.30852165863112	3.74661670923665	3.29165772115242	3.58005728883709	3.27521594703156	3.5914774266002	0.0470878461569352	0.941186902533441	0.986908937621943
Merged-chr5-138754451-2	chr5	138753951	138754951	+	916.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-630.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	3.99380412223444	3.49330104275361	4.10462738956554	3.46340232621312	3.44658205910328	3.65662942686087	-1.23332034115935	0.0400713034345723	0.249159543878635
Merged-chr9-108561611-2	chr9	108561111	108562111	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011830, exon 3 of 14)	exon (NM_011830, exon 3 of 14)	1110.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	2.92895249710133	2.91698370381782	3.12801252994344	3.02217593635047	3.08612701307871	3.14285444715245	0.432058202559401	0.516068542774076	0.844051513295388
Merged-chr8-117303778-4	chr8	117303283	117304283	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-45387.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.88575863010022	4.37485924199449	4.7998080724943	4.70027122475708	4.5728560701285	4.41386649107157	-0.312198130335184	0.486113001723657	0.827646803246881
Merged-chr11-74832297-4	chr11	74831798	74832798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	1374.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.79916388600427	8.62661338419178	8.29843328976813	8.49918210067724	8.78281553129712	8.14240290739448	-0.120220274014604	0.649822817162395	0.902362393325355
Merged-chr16-36985810-4	chr16	36985317	36986317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	4650.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	6.73684168951792	6.80252210220595	6.6126838854031	6.68040055402653	6.94122507684114	6.62021869961468	0.0630184112470415	0.811874766134868	0.955333185419231
Merged-chr5-66018370-2	chr5	66017870	66018870	+	589.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001127382, exon 8 of 8)	3' UTR (NM_001127382, exon 8 of 8)	-14085.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	2.59141134637399	2.422640465701	2.63489806547291	2.45207440407199	2.18723438448592	2.39106003892325	-1.3333065996678	0.124185518750265	1
Merged-chr11-86814370-2	chr11	86813870	86814870	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-6710.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	5.81970063094552	6.01449672102591	6.29357492294206	5.64934739879268	6.12663779624986	5.67859362171141	-0.344856563061822	0.315772565885434	0.7100338781839
Merged-chr4-123748833-3	chr4	123748332	123749332	+	836.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	1467.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	5.97079908958476	5.94225969524067	6.2298092320247	6.18118296680457	6.55994219819416	5.82622743988391	0.326976173513875	0.329414397421561	0.721370455053117
Merged-chr18-15212900-2	chr18	15212400	15213400	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61454.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	3.53768442684948	3.71322786471893	3.57077669412831	3.85083147975834	3.97126581972403	3.85620885059024	0.935834781157685	0.0822169460984288	0.379123019025808
Merged-chr10-8879499-2	chr10	8878975	8879975	+	870.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	6595.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.97059937440261	5.94433245709711	5.98368391035834	6.01360116694643	5.68312521808377	6.06652889809791	-0.0785441923893279	0.799005994062676	0.952147379219007
Merged-chr10-20788977-1	chr10	20788477	20789477	+	779.5	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-63899.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.93391062391992	3.67454405760534	4.01084611261011	3.81849045003562	3.68306726826469	3.68143420009737	-0.471716021664671	0.381506747497991	0.763170610491811
Merged-chr11-86634591-4	chr11	86634071	86635071	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	36704.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	5.22255512661111	5.24894139600851	5.35469569721677	5.50151107726539	5.41667844619737	5.08328682933697	0.167794806366467	0.637381261182611	0.897347930665099
Merged-chr8-121650976-2	chr8	121650476	121651476	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	957.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	2.95590302212572	2.96277720912981	3.16260739424317	3.03418231971321	2.67446039086322	2.88366320465348	-0.754707849973575	0.296947604864754	0.693511179566253
Merged-chr8-84965107-2	chr8	84964606	84965606	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027187, intron 4 of 7)	intron (NM_027187, intron 4 of 7)	905.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	2.81054843428274	3.10917351300523	2.9098460055484	3.17012960744738	2.94074780209489	3.46973570426075	1.15497159078868	0.113484724536572	0.450109011832741
Merged-chr7-126587296-3	chr7	126586715	126587715	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138310, exon 2 of 4)	exon (NM_138310, exon 2 of 4)	-1398.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	4.56681410528586	4.81027264807643	5.36338108910699	4.6569775752596	4.69933013351747	4.60683611237067	-0.652608518376268	0.150298841088445	0.517246479850651
Merged-chr2-79253935-2	chr2	79253435	79254435	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.92101517070237	5.39764019040399	6.0449529896175	5.71511814729346	5.61459952846086	5.8377744204642	-0.161189352868695	0.646514804138612	0.90100465546023
Merged-chr18-4257091-3	chr18	4256634	4257634	+	968.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	91302.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.07823419377548	6.56951914354272	6.53199839458024	6.26880916441705	6.26873773448688	6.48904778159992	-0.11335730521819	0.70654161820419	0.923001162707983
Merged-chr17-30197023-3	chr17	30196493	30197493	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356265, intron 5 of 5)	L1MD3|LINE|L1	191954.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.30838470082225	3.98260470883405	3.87278884667149	3.7907609663688	3.3018235188947	3.94344042868018	-1.15872814151574	0.0580010179890423	0.311143620967844
Merged-chr2-84599632-2	chr2	84599094	84600094	+	749.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49886.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.09865637764347	2.95634129109548	3.31487294497205	3.25959224477745	3.01358700109836	3.16363011303779	0.0949509521840932	0.886686861575772	0.973794308941933
Merged-chr7-101379120-6	chr7	101378617	101379617	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	995.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.39451434904036	6.27795255184995	6.52534680130717	6.76755823774481	6.71121740397986	6.66807816794347	0.516057992000322	0.04892179803354	0.280988815543232
Merged-chr10-60362337-4	chr10	60361829	60362829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	15478.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.15475474525266	6.27555460587889	5.97200015983476	6.0449523371601	6.09090139563187	5.56479217069315	-0.361149236367176	0.2668540405406	0.664344643069212
Merged-chr11-69121108-2	chr11	69120608	69121608	+	727.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033041, intron 1 of 3)	intron (NM_033041, intron 1 of 3)	655.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	4.23479766271869	3.73766717896496	4.08447149681008	4.39723195714702	4.04749741692069	4.49865907518973	0.791030347131519	0.13178618857662	0.48542121200015
Merged-chr5-145140941-4	chr5	145140427	145141427	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	490.0	NM_001310770	231889.0	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	6.86139669942104	7.33609183041145	7.09791547065126	7.23154036693295	7.03467392660301	7.02453857135217	-0.0225742981738252	0.932001153758349	0.985027383295414
Merged-chr5-67297222-4	chr5	67296704	67297704	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9751.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	6.03108364696878	5.97786441424268	6.1585637352973	6.07683608616085	6.36578072107122	5.9477636116764	0.176588551160426	0.559801944559533	0.86512447604019
Merged-chr11-69632028-2	chr11	69631528	69632528	+	625.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-943.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	5.30019384249035	5.219514968561	5.3366319685733	5.49218725220759	5.87233796927296	5.8107912090497	0.86570488822935	0.0103798744194157	0.103102374440819
Merged-chr8-120667264-2	chr8	120666764	120667764	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009941)	promoter-TSS (NM_009941)	848.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	5.0052660127285	5.17640591847574	5.13186617817838	4.81161902531515	4.74750994591571	4.8833235253175	-0.648356754467972	0.0852584641402413	0.386467324208089
Merged-chr11-20742471-4	chr11	20741976	20742976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-920.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	7.78784015014886	8.20233979430211	7.60549182943584	8.0516744786406	8.39163582124019	7.72979456988286	0.279074743502581	0.329571912181071	0.721399184090983
Merged-chr16-11008404-4	chr16	11007897	11008897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040518)	promoter-TSS (NR_040518)	-501.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.77013812092925	7.77550539226625	7.6657096518963	7.38112000685507	7.69434965345185	7.16947237463244	-0.427038622158427	0.0897438076905366	0.39813407711208
Merged-chr19-56728254-2	chr19	56727754	56728754	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5882.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.89867313921605	5.05184507689645	5.06259463151448	4.98807894928806	4.98216446983164	5.05881199800012	0.00717249796498538	0.984507160929554	0.996640572378202
Merged-chr1-182937853-4	chr1	182937347	182938347	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16941.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.89288006159233	3.82280870629808	4.26449903994255	3.90543211169366	4.04160228815809	4.28952900943886	0.248826701263618	0.633439240650273	0.896059441151508
Merged-chr3-65955268-2	chr3	65954768	65955768	+	704.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355432, exon 4 of 12)	5' UTR (NM_001355432, exon 4 of 12)	2981.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.09630914669626	5.0198462322266	4.86433821218516	5.11019986197882	5.47590600221727	5.08213462660894	0.50725460593175	0.183845783946594	0.567244140856875
Merged-chr17-56476106-1	chr17	56475606	56476606	+	941.0	f0_c57.idr	intron (NM_001252455, intron 1 of 27)	CpG	374.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.76909887471516	3.65098142418441	3.75105354926439	3.97908494753437	3.88389139717736	4.01903392291693	0.74803625078578	0.147587540086247	0.512540235204358
Merged-chr1-54901910-2	chr1	54901410	54902410	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	24477.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.62787034363974	3.5594240843251	3.56604097308639	3.3045756979025	3.55963410241711	3.52895747333324	-0.412463927153494	0.476997582109406	0.823068616236561
Merged-chr4-149696889-4	chr4	149696376	149697376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1832.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.12838698344101	5.58399710056837	5.98455357010961	6.20697216544833	6.46044621384642	6.53297813041077	0.824508308394881	0.0100793459005705	0.100948749842882
Merged-chr9-14501195-1	chr9	14500695	14501695	+	639.0	f0_balb.idr	promoter-TSS (NM_173433)	promoter-TSS (NM_173433)	576.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	7.06643822680094	7.45600101490338	7.32080310191336	7.2851593875868	7.08412984631553	7.21832582282141	-0.143873998458679	0.566977856741529	0.867700458659165
Merged-chr16-31124481-3	chr16	31123970	31124970	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 10 of 22)	intron (NM_030138, intron 10 of 22)	-43038.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.35413928555827	3.93641070336892	4.07812058353659	3.72960553136349	3.49725883083236	3.74601665270803	-1.54278743280257	0.00500675298455665	0.0612739965199279
Merged-chr5-136664731-2	chr5	136664231	136665231	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28415.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	2.13160403878193	2.0265880306514	2.23074627020086	2.01172704658458	1.78211394822864	2.11029801956377	-1.27373231753196	0.21681683223585	1
Merged-chr10-84556360-4	chr10	84555855	84556855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3017.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	4.09231247110517	4.27171028961151	4.79952043216822	4.43640278779914	4.48154672086716	4.36601666873654	0.0500078250277461	0.918691491429889	0.981830247255695
Merged-chr6-15764326-4	chr6	15763837	15764837	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	43676.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.24282935707521	4.37267721826349	4.22415483944212	4.54414030041747	4.35052112522098	4.95098033228347	0.860987187148174	0.0674929364456311	0.339784139385774
Merged-chr12-79627549-4	chr12	79627064	79628064	+	914.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297169.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.39214557864955	6.52612360075588	6.58107840326957	6.38188997993117	6.78698386019266	6.50161895581854	0.126933570957708	0.650642696792445	0.90265185343381
Merged-chr17-71004977-2	chr17	71004477	71005477	+	730.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2444.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	3.01298021319943	3.05999207157145	2.97568357559539	3.19470964280318	3.17077787339617	3.49689032035857	1.16331440533766	0.0794686693309225	0.372757814707326
Merged-chr2-27418211-4	chr2	27417667	27418667	+	879.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	9441.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.96886981214052	7.05886080571325	7.13322626530189	7.0248784459369	6.98931905108188	6.79041006813834	-0.162818806082371	0.508248486567373	0.839777201102046
Merged-chr5-74951176-2	chr5	74950676	74951676	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	1982.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.4493706145601	3.28036034140639	3.47793111509108	3.20876307138065	3.07792403285951	3.54769223580369	-0.469186348360276	0.464682755564698	0.816459397744841
Merged-chr17-34604761-2	chr17	34604267	34605267	+	926.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1094.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	7.83641127136347	7.78702972582458	7.80324044865688	8.08508397142177	8.2793826783602	8.06839539007871	0.487464642110993	0.0226556513464154	0.175377378103315
Merged-chr2-181189577-2	chr2	181189077	181190077	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2330.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	4.04096595415147	3.4491994515822	4.03600859510315	3.84791795169548	4.08361465026837	3.91301914203067	0.259200257815151	0.653848134641052	0.903558174250044
Merged-chr7-99182172-2	chr7	99181652	99182652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026384, intron 1 of 7)	PB1D7|SINE|Alu	561.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	5.11330905455547	4.91191939849493	4.72986203347681	4.64834410521678	4.77135818646571	4.71522303022596	-0.500259489480674	0.213731158392553	0.606900020244801
Merged-chr8-95420693-3	chr8	95420235	95421235	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 5 of 5)	intron (NM_008187, intron 5 of 5)	14134.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	3.7983872150867	3.83650889717758	3.98024209287849	4.21649524039673	3.994295329114	4.2753089102145	0.869399057838887	0.082246220937198	0.379215471199886
Merged-chr4-115825450-4	chr4	115824942	115825942	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-2650.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	3.73289535830065	3.5932553704816	3.19542032300013	3.3789279177222	3.42299667505826	3.72295222846252	-0.0673503474478214	0.916577816051342	0.981312252061916
Merged-chr11-82045527-4	chr11	82045045	82046045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013654)	promoter-TSS (NM_013654)	-167.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	5.04500893979316	5.04354299536292	4.93754291682206	5.16979922966109	5.47125008617471	4.92642504601694	0.439363632377192	0.255827994038391	0.65280036212337
Merged-chr11-26587756-4	chr11	26587260	26588260	+	978.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6160.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	5.85622269425348	5.79304851624702	5.59437371137133	6.09643259193884	6.08397496608997	5.90116063249512	0.482718166747989	0.113928374344644	0.450859089500984
Merged-chr14-77923679-4	chr14	77923168	77924168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	19429.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	5.30295899417404	5.32483481432158	5.59232961586857	5.78173886721197	6.16811320058302	5.73606128988032	0.958194077259156	0.00470006246320453	0.0586594866414163
Merged-chr12-70107113-4	chr12	70106594	70107594	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286079, intron 1 of 28)	MIRb|SINE|MIR	-4240.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	2.71724755117228	2.58476698072256	2.74174548601498	2.57132105084176	2.75812541287134	2.49648313337322	-0.340035017955466	0.665062580784104	1
Merged-chr10-60366142-2	chr10	60365642	60366642	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 4 of 6)	(TG)n|Simple_repeat|Simple_repeat	19291.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	3.9545005779552	3.60639060466955	4.05848571751597	3.71082182047755	3.72056080134554	4.12556230898248	-0.0722995162323941	0.897377870882741	0.975989045047592
Merged-chr13-5866858-4	chr13	5866367	5867367	+	790.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 3 of 3)	intron (NM_011803, intron 3 of 3)	5378.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.89807994145833	4.69547682610102	5.16440546198832	4.91030572061201	4.6440698955153	5.13512795920486	-0.051125140832611	0.903186325178011	0.977756599430303
Merged-chr3-126616678-2	chr3	126616130	126617130	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	ORR1A4|LTR|ERVL-MaLR	19679.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.99349538056203	3.80210655258981	3.96310819861149	3.79288430639795	3.78158758087953	4.20951165895379	0.0375110975910134	0.943560160323275	0.987453245208137
Merged-chr1-89078903-4	chr1	89078421	89079421	+	932.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133816, intron 1 of 5)	intron (NM_133816, intron 1 of 5)	8506.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	4.08580425938086	3.76651016683365	4.24824123082538	4.60892025362001	4.40086972152678	4.48783515022301	1.25598874385152	0.0101874133635476	0.101688374658598
Merged-chr3-94841629-1	chr3	94841129	94842129	+	542.0	f0_balb.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	4062.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	2.57816006530348	2.43239898568163	2.97923614853072	2.41411570254613	2.48714793798595	2.65058687503414	-0.896897866093813	0.282021537258296	0.679908771156903
Merged-chr16-10971640-2	chr16	10971140	10972140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	URR1B|DNA|hAT-Charlie	21481.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.0291093494461	4.95587541374184	5.4400192209975	4.88618420903639	4.89927257331744	5.39405225159717	-0.163720928639485	0.690851811006256	0.918006228645383
Merged-chr2-13557503-8	chr2	13557002	13558002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12838.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	5.88380204213469	5.68513430632309	5.54506951922244	5.52792734857432	5.26059089338298	5.11402545772336	-0.761601412771516	0.0300043494221416	0.208973123522019
Merged-chr4-58503227-4	chr4	58502719	58503719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172989, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-3816.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.77784663902654	3.83795846857664	4.13770094101081	4.5749010986963	4.71089146311411	4.43464335623228	1.86922846342759	0.00011510632160137	0.00319365348709797
Merged-chr4-66793614-4	chr4	66793105	66794105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-33946.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.42764681353871	3.34034941453655	3.11323539139731	3.39497950941263	3.31101792178835	3.30898062627012	0.125000487592246	0.841638647388781	0.962988975342446
Merged-chr16-75886479-4	chr16	75885995	75886995	+	928.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22771.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	5.9389163380576	6.24239479589243	6.12101685654268	6.10626910360886	6.53486507785249	6.24489169353915	0.351103601100748	0.249101846416726	0.646071517880522
Merged-chr14-25841950-6	chr14	25841437	25842437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013469)	promoter-TSS (NM_013469)	-218.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	6.95354326592176	7.05769260901946	6.6557938995518	6.49287078878592	6.58452263507706	6.05949995447519	-0.779224613200154	0.00911017289158179	0.0943539041526932
Merged-chr8-120746899-2	chr8	120746399	120747399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 4 of 8)	intron (NM_001301811, intron 4 of 8)	8260.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.26660090034256	4.36800615287452	4.32896155713728	4.50140938053127	3.89644372640363	4.16685104597838	-0.300074084035911	0.547624999237758	0.859389836719927
Merged-chr7-45461667-2	chr7	45461167	45462167	+	980.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007527)	TTS (NM_007527)	-1781.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	6.65070034036825	6.5893966201038	6.66374880914661	6.45389936167702	6.60189717001637	6.96576774693496	0.0779006936911283	0.779623953650715	0.945858003792295
Merged-chr1-133132160-4	chr1	133131676	133132676	+	965.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1010.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	7.922631536275	8.65858543003872	8.09204794957007	8.08148556330519	8.3942265863519	8.54687788914401	0.116589152979783	0.680533129077549	0.914280879868547
Merged-chr2-117405635-4	chr2	117405126	117406126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-62749.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.98560448667272	5.72458041788932	6.17273360434643	6.25185003679995	5.99029873955023	6.34746934301474	0.399203300005721	0.204429932209576	0.594949662456522
Merged-chr4-48149390-4	chr4	48148862	48149862	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026343, intron 3 of 7)	intron (NM_026343, intron 3 of 7)	24443.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	3.03164526832683	3.12899152734665	2.89148577359938	2.96664248553915	2.75649469962101	3.02614358210611	-0.518442110977794	0.46206429491236	0.815107818354545
Merged-chr5-124328004-4	chr5	124327510	124328510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	-38.0	NM_001277867	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	6.80597950335412	7.04357921843097	6.93264162249021	6.85385204491684	6.95286485325872	6.78504582745674	-0.0938431224717565	0.708371584007356	0.923684652799343
Merged-chr9-58273141-4	chr9	58272634	58273634	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19970.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.42826443333368	6.21239790219795	6.14688314242798	7.00717850589943	7.073726729001	6.91873003773609	1.15359949010756	1.38359874576296e-05	0.000530781394363507
Merged-chr10-8768870-4	chr10	8768375	8769375	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	117195.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.71140637500028	5.2983201426074	5.34359373269402	4.98025130555413	4.96070908984252	5.07708900679617	-0.951044260229239	0.009880426541499	0.0996164552987906
Merged-chr9-111058673-4	chr9	111058150	111059150	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1132.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.58225644617526	8.35646791324489	8.20040317873868	8.34799453447628	8.60537663499446	7.99341488133169	-0.0623877925030722	0.807239286150663	0.95453117889869
Merged-chr13-95325807-3	chr13	95325281	95326281	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302539)	promoter-TSS (NM_001302539)	956.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	6.7478712703374	6.71510028683419	6.02673797468041	6.40983003189893	5.89842826868575	5.98879069758655	-0.702286336296373	0.0425610976313957	0.258705808438394
Merged-chr5-21424807-4	chr5	21424311	21425311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	-92.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	5.17442346729457	5.31034182456726	5.0284100020711	5.09967194235576	4.86821991901264	4.55628910273323	-0.665556492408237	0.100971244982563	0.423786054625959
Merged-chr10-123112943-4	chr10	123112442	123113442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027604, exon 22 of 22)	3' UTR (NM_027604, exon 22 of 22)	-36437.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	4.84213557653018	5.16538068683877	5.33460198513349	4.75907200983482	4.68370006214511	4.41281307105382	-1.08652364037961	0.0109458155805309	0.107037186840382
Merged-chr19-6922653-2	chr19	6922153	6923153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-845.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	7.31509155488262	6.97705387986483	6.76376092540831	6.9128645648888	7.15250970789264	6.35224017645854	-0.280127001792208	0.388262641592888	0.76820261821444
Merged-chr2-28840439-4	chr2	28839975	28840975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	69.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	6.47637360102934	6.51179513270143	6.53031577675477	6.46190927233805	6.35484193934552	6.08843941743821	-0.30121182912846	0.278151431125532	0.675475432925552
Merged-chr7-113256044-2	chr7	113255516	113256516	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243048, intron 2 of 16)	intron (NM_001243048, intron 2 of 16)	48551.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	2.81399415906264	2.80631883377696	3.04199126342647	2.80168732586307	3.13173150412948	2.99800520964987	0.480961994625333	0.499431034645199	0.834486707618126
Merged-chr2-79698420-4	chr2	79697913	79698913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9367.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	4.96556166474223	4.72608684730001	4.88910605943952	4.70668890396117	4.69411988372621	4.64540288843066	-0.409228382557734	0.304181473092414	0.700729014758405
Merged-chr11-120989793-3	chr11	120989259	120990259	+	879.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	1574.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	5.59401356002608	5.47665375236564	5.34471152751248	5.92371348829205	5.88524165698121	5.65291700948192	0.643497790499992	0.0473443840716546	0.275609477462235
Merged-chr9-119101722-2	chr9	119101222	119102222	+	948.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-756.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	4.71488360093591	4.87216376261187	4.70065866704581	4.97734590209292	5.08476100680868	5.06567304893948	0.603435766635341	0.114507157938475	0.452029859743929
Merged-chr9-66510518-2	chr9	66510018	66511018	+	843.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175206, exon 2 of 2)	3' UTR (NM_175206, exon 2 of 2)	4075.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	2.81332811859557	3.20171067947208	3.12107773521841	3.01486190855279	2.88288629160348	3.13596874017046	-0.205400604271242	0.769896519402067	0.943288465925629
Merged-chr17-85395703-4	chr17	85395204	85396204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 6 of 10)	intron (NM_028576, intron 6 of 10)	222692.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.71834870959175	4.67368858215606	4.63917576057682	4.85930236242254	4.80478607627412	4.70606667337659	0.267085198448764	0.500288248634401	0.834978949366358
Merged-chr3-60472903-6	chr3	60472320	60473320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-10.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.67895325155909	6.88961122834246	6.87799041413847	7.13304529251477	7.24708115132001	7.02010289438672	0.497951623402982	0.0453752326917935	0.268916122636664
Merged-chr4-53098181-2	chr4	53097681	53098681	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	61714.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.5614592637497	2.48715186119314	2.99469253199192	2.41386511934392	2.57244847823561	2.95754951304028	-0.170150952068897	0.842103184697513	0.963002495523594
Merged-chr8-75083166-2	chr8	75082666	75083666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10452.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.89622025636097	6.89897353280052	7.05474270430153	6.6139568261353	6.86944543728961	6.34277993007321	-0.475903010300369	0.0886477456516525	0.39523129294233
Merged-chr16-24698416-1	chr16	24697916	24698916	+	547.0	f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	Lx3C|LINE|L1	-23439.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.13536113945863	3.13724389008959	3.15588122163241	2.96569873227485	3.07007346344683	3.38979426384407	0.0212622744788497	0.974423924618122	0.994276686350905
Merged-chr14-75178838-7	chr14	75178280	75179280	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	42355.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.98884026431939	7.99923469086961	8.00109158836431	8.27065315632549	8.28828345650748	8.36329391006712	0.437379859188967	0.0313764223127088	0.21461318107652
Merged-chr13-56178743-4	chr13	56178236	56179236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168615, exon 1 of 3)	5' UTR (NM_001168615, exon 1 of 3)	149.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	7.26594696811926	7.42697930524939	7.41395710972589	7.1006779172246	7.47249923901752	7.64275436316191	0.0769369940747484	0.765076780367042	0.942123616786297
Merged-chr11-96978350-2	chr11	96977850	96978850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-662.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	6.0637344585746	6.10331345024054	6.06673853659106	6.16530662465081	6.41819155854287	6.23482999724275	0.345592601122157	0.222945846433341	0.61780657375114
Merged-chr1-54564150-4	chr1	54563649	54564649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-6465.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	7.30714289392717	7.34845027491505	7.23997775759233	7.22579227282825	7.20557400768278	7.04465918878197	-0.202750903813865	0.385114448083244	0.76623192225821
Merged-chr6-99784991-4	chr6	99784474	99785474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-58582.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	4.36977453482194	3.83156852376046	3.99101022302143	3.61013713688863	3.82525064738061	3.75185583534847	-1.09023344550653	0.0499397471705548	0.284491365173726
Merged-chr3-87329428-2	chr3	87328905	87329905	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-28476.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.65435892282947	4.61350117269982	4.70184038835813	6.2980664882998	6.4900678893905	6.42915216107469	3.44875717255328	9.99318519035963e-22	8.84588248212175e-19
Merged-chr9-62909399-2	chr9	62908899	62909899	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 7 of 13)	intron (NM_019663, intron 7 of 13)	-47375.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	2.96575900491357	3.17287695273848	2.98905032368643	2.97064396537108	3.07717905316124	3.34427995466221	0.375344008390853	0.580984124728398	0.873185386905448
Merged-chr18-36471721-4	chr18	36471242	36472242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-17247.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	8.13296664122684	8.10757758453091	7.46025031565037	7.80364483510665	8.0211840853116	7.31672539547694	-0.268052012512483	0.378102216660391	0.760495811314425
Merged-chr4-116708460-4	chr4	116707962	116708962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	-77.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	5.83346557019867	5.66922430273667	5.85046965050647	5.88218256325617	5.96667946126442	5.64893020521063	0.121053505283405	0.699105277194734	0.920515737149593
Merged-chr10-120136332-4	chr10	120135842	120136842	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23377.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	2.61482857399119	2.77541165918423	2.5928213353233	3.05538637102667	2.57260493237631	3.04235042827864	1.22117761121889	0.126581044905352	0.475549804679232
Merged-chr8-104099519-4	chr8	104099032	104100032	+	835.741638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-2093.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.27420801072431	3.60385716570476	3.56956820905216	3.42726361380961	3.4130690704051	3.48021238368311	-0.189303242408817	0.750475202182785	0.937550343416037
Merged-chr8-46130580-2	chr8	46130080	46131080	+	830.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6434.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	4.16832843446365	3.99920104586809	4.35179969099494	4.02720257049509	4.06627033340094	4.37712065538869	-0.0434674889188278	0.929596633029645	0.984182996007117
Merged-chr1-144283990-3	chr1	144283491	144284491	+	791.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-34887.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.0700384742503	5.24866068446747	4.94966857596646	5.03735124674694	4.71874227986086	5.31039390356986	-0.149753661333982	0.711150887229368	0.924570600843444
Merged-chr17-29492937-4	chr17	29492434	29493434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1889.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.5116676683987	6.3918690483244	6.36201496098582	6.83349910325059	7.0565933733735	6.83301816601194	0.775031067694701	0.00296538790416136	0.0417628965047866
Merged-chr9-56257491-2	chr9	56256991	56257991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 4 of 6)	intron (NM_172924, intron 4 of 6)	-96421.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	6.32086116313894	6.30290607931739	5.92817011542463	6.50904935643406	6.77567672739495	6.31448851978809	0.571259770513264	0.0607815060414795	0.319387855610097
Merged-chr1-171184513-4	chr1	171184017	171185017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	URR1B|DNA|hAT-Charlie	11751.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	4.86200286375089	4.4942899291543	4.76489880090025	5.11378743409566	5.03650705521563	4.57824797840833	0.505227048880257	0.239955514956843	0.63694192390114
Merged-chr8-116980283-4	chr8	116979793	116980793	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	5.38500752816328	5.48852596217234	5.53535133675195	5.73922059664965	5.53714779258653	5.87714763743439	0.46276134512444	0.159674852041153	0.531980984530142
Merged-chr17-66076271-6	chr17	66075734	66076734	+	945.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025572, intron 1 of 12)	intron (NM_001025572, intron 1 of 12)	812.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	6.11136929920726	5.79975105916551	5.6329422104338	6.15288246095216	5.52280625459825	5.51558412404194	-0.176640969873582	0.634044841606912	0.896247399650521
Merged-chr12-78861676-4	chr12	78861189	78862189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	-51.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	8.15730614553142	8.33546774672105	7.76986894933699	8.0688511942682	8.19882132628864	7.67625805886467	-0.152968549129893	0.567891282441385	0.868402679242594
Merged-chr7-121469601-4	chr7	121469095	121470095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081327, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	77299.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	4.17255712514373	4.42365539297888	4.53575674340144	4.57872676436678	4.33086308469553	4.98820591079337	0.662243053753772	0.165245642321308	0.54001097346129
Merged-chr4-149340910-4	chr4	149340421	149341421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	6282.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	3.48221266340172	3.65952232791094	3.82528253190375	3.76177089591495	3.59733052344478	3.694505058603	0.0933826846411396	0.866711243180509	0.969114221403526
Merged-chr16-3743122-2	chr16	3742610	3743610	+	696.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-989.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	6.73947715315963	7.01803685872873	7.00122304573178	7.09996780444715	7.30106257012783	6.8899625798632	0.295420304639432	0.263078405714471	0.66107655551263
Merged-chr10-93161698-8	chr10	93161149	93162149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146239, intron 1 of 16)	CpG	773.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	8.4606904785024	8.35537050268894	8.4502750592098	8.66059617372695	8.66394857263606	8.54877900134747	0.285681024566038	0.151468757755614	0.518929380900567
Merged-chr15-66729647-4	chr15	66729141	66730141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009375, exon 27 of 48)	exon (NM_009375, exon 27 of 48)	58871.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	6.52609763528724	6.25237335260813	6.6335414068505	6.3893692074135	6.47863110368058	6.25841735574342	-0.142190710817906	0.616431943139104	0.888359083506792
Merged-chr15-98763262-4	chr15	98762766	98763766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007478)	promoter-TSS (NM_007478)	-148.0	NM_007478	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	6.5359060097966	6.26851782902363	6.58108747752917	6.43782484569357	6.46436142390524	6.63995263614478	0.0785107828078274	0.775868247313718	0.944804182096302
Merged-chr19-17360853-2	chr19	17360359	17361359	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	MER92B|LTR|ERV1	-4192.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.14761028681523	6.26909042338018	6.2866099477031	5.13404540139582	5.48382914521118	5.65711387596951	-1.43068715077148	1.40568106417625e-05	0.000537754707349071
Merged-chr6-5159520-4	chr6	5159024	5160024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 15 of 15)	intron (NM_181595, intron 15 of 15)	34422.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	5.33747402465428	5.26678750727329	4.91987473255014	5.03267778109135	4.76970445396542	4.69898703518388	-0.754183647552016	0.0575858049911119	0.309855125562626
Merged-chr8-126929243-2	chr8	126928743	126929743	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16678.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	4.34937784673511	3.80043158886185	3.86591212983247	4.00524410996035	4.29712661993426	4.13967276323718	0.337210218045398	0.529538415799879	0.850943076513641
Merged-chr2-145741793-4	chr2	145741304	145742304	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	40609.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	5.6132799711894	5.67063790413338	5.62587273142415	5.26812785424248	5.66739322099316	5.49093990673648	-0.268829157449838	0.424021401675357	0.792383501074238
Merged-chr4-109245834-3	chr4	109245315	109246315	+	668.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033226, intron 5 of 7)	intron (NM_001033226, intron 5 of 7)	10183.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	3.23286949643427	3.00229730007598	3.47098203875506	2.90931292536363	2.72685780697154	3.11777821391404	-1.48802718096495	0.0427882527440513	0.25938364556538
Merged-chr7-141458551-4	chr7	141458053	141459053	+	919.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025802, intron 5 of 7)	intron (NM_025802, intron 5 of 7)	-2541.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	3.32514097234353	3.23827856206684	3.48216339198398	3.20901354328918	3.03732210622948	3.3954422063104	-0.547107908057906	0.392470848054163	0.771172125304963
Merged-chr7-102396093-1	chr7	102395593	102396593	+	550.0	f0_balb.idr	intron (NM_009287, intron 3 of 11)	L2a|LINE|L2	-45602.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	4.27220085688606	4.58804155658789	4.4249764609827	4.13754816006903	4.18584022750293	4.40754594089791	-0.517081045086192	0.262801600030716	0.660760123749194
Merged-chr8-72547619-2	chr8	72547119	72548119	+	979.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027485, intron 1 of 2)	CpG	691.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	6.11205736818686	6.36949607677635	6.04341233151129	6.36915958335441	6.26500802539598	6.19393297193592	0.14832455827942	0.607858200053857	0.884752831355176
Merged-chr5-43892573-1	chr5	43892073	43893073	+	610.0	f0_balb.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	23764.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.58146245247922	3.51778839980754	4.10676182386229	3.58960798690967	3.38962114487127	3.96120779607501	-0.306643566284163	0.62266477109721	0.891241737245933
Merged-chr7-127018076-2	chr7	127017576	127018576	+	588.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-724.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	3.22595216910395	3.19709190824194	3.43814113855613	2.97701094949411	3.1032544834986	3.40482213733959	-0.494658119570957	0.454582083476011	0.810474951829269
Merged-chr6-97278573-4	chr6	97278077	97279077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25797.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.02091503021725	4.77001652208787	4.79491643966671	4.89408219138832	4.81226894540052	4.47513366722477	-0.272093862314321	0.513683265554887	0.842716032340123
Merged-chr6-33835423-4	chr6	33834916	33835916	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-194032.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	6.82203040037589	6.75555634519837	7.01113431082975	6.99406515413096	7.31932893241744	7.09488034052253	0.440769920661993	0.084989611861513	0.386100438074513
Merged-chr6-114836840-3	chr6	114836378	114837378	+	644.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	84943.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.31097857312587	4.46299969573456	4.64138838336146	4.96297219587933	4.48772953083845	4.78364559019129	0.680845055775255	0.124187595595438	0.471570153735589
Merged-chr9-106475649-2	chr9	106475163	106476163	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145619, intron 2 of 10)	B1_Mus1|SINE|Alu	1286.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	5.33581500392847	5.21026777654323	5.38314567182387	4.856567891984	5.37556566520044	5.02207195491694	-0.385983689539405	0.316738657804753	0.710746480370483
Merged-chr10-81430682-10	chr10	81430119	81431119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3446.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	8.55829641889146	8.24347243031342	7.75783621259147	8.2436664369133	7.95447840543136	7.89279130900526	-0.274071057407784	0.325937209047035	0.71836895850358
Merged-chr2-11771921-4	chr2	11771420	11772420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5665.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	5.04260359543023	5.27590097181604	5.01077489667573	5.15090602453094	5.10092739278158	5.80508715839488	0.52471102311123	0.199586116245273	0.588163754351147
Merged-chr11-62251235-4	chr11	62250724	62251724	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007413, intron 1 of 1)	intron (NM_007413, intron 1 of 1)	2240.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	2.56311829204848	2.52239791498719	2.95678629060337	2.45532712837119	2.50337258164397	2.42608185793492	-1.30770825885101	0.116095430999291	1
Merged-chr19-43511735-4	chr19	43511241	43512241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	12864.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	8.34329486049136	8.48605812317453	8.09234778387425	8.23852549400531	8.42670996469892	7.974087813911	-0.124597278751729	0.606996145914969	0.884418509188691
Merged-chr3-59201540-3	chr3	59201040	59202040	+	653.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-6436.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	4.11939427528129	4.03515380728311	3.94158119150294	3.77471303532187	3.74461867227047	3.75190575826346	-0.883226018293082	0.0848791802821725	0.385767251087995
Merged-chr15-82218976-4	chr15	82218471	82219471	+	923.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5409.0	NM_028075	72049.0	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	2.47402451068777	2.61255639592357	2.55303902538811	2.70806878918803	2.58935096788734	2.93080851077098	1.08867307924535	0.163055723027949	1
Merged-chr8-109681626-3	chr8	109681095	109682095	+	769.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 4 of 10)	MTB_Mm|LTR|ERVL-MaLR	11699.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.0478378318309	6.33209690318507	6.20674810224364	6.11184872624961	5.84606988084401	6.12096583476244	-0.30354440465456	0.310085788071355	0.705656335571635
Merged-chr5-3461020-4	chr5	3460547	3461547	+	847.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82786.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.16680302917929	6.30217307141613	5.71499775358979	5.5107410945189	5.70495992067015	5.66571794719771	-0.827225156871271	0.0129164980006804	0.120407345467244
Merged-chr19-53423939-2	chr19	53423439	53424439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33305.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.58115701474076	4.5256930566596	4.2954748131003	3.97907113441852	3.9318868686596	3.91551436690451	-1.51076128488604	0.00171934415592259	0.0275174434556658
Merged-chr7-98355462-4	chr7	98354959	98355959	+	920.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	5829.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	4.28922619044666	4.0952145165165	3.70504103639026	3.8728509946951	3.78814935986918	3.83387579072409	-0.701012649218219	0.195918602535223	0.583652434941867
Merged-chr4-11147273-2	chr4	11146773	11147773	+	891.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9168.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	4.14001172782496	4.20373487318017	3.82733823483098	3.89769111676453	4.04825471976754	4.00291847163768	-0.265495933977824	0.601715064184846	0.882044766145072
Merged-chr12-40473851-1	chr12	40473351	40474351	+	640.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	27798.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.26410353073832	4.29796208984262	4.43208902928698	4.27128543984354	4.12067852290763	4.32991508743623	-0.248219358775801	0.586198338969275	0.875415330574598
Merged-chr10-75512663-4	chr10	75512149	75513149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4732.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	6.4445362107094	6.33926695337381	6.01554238488172	6.64903001083135	6.5405951070667	6.63566515298773	0.509642388086095	0.0720810736396618	0.352624479321406
Merged-chr10-75591719-4	chr10	75591220	75592220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	2339.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	5.6487103289866	5.52968939217743	5.80025530659893	5.54176012419015	5.44840896670447	5.68846790047722	-0.191464261470485	0.557642155499858	0.864290289364679
Merged-chr9-64105488-4	chr9	64105018	64106018	+	916.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11629.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	4.0882660149427	3.77292676276666	3.82897286052393	4.06222471921939	3.71125415077143	3.79384574017553	-0.135597702369015	0.8013429401428	0.952926075621707
Merged-chr11-103249706-4	chr11	103249219	103250219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	17682.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.89674070318026	6.83618261777105	6.90823893455099	6.8123869674489	6.94317980482959	6.58738915498502	-0.12191966170711	0.636206329644563	0.897032166554798
Merged-chr12-87407069-4	chr12	87406570	87407570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18715.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	6.42201997134287	6.20948129385132	6.58656222858769	6.60465160334186	6.71358197631856	6.47201412097172	0.324643976040493	0.243085649814066	0.640367862483409
Merged-chr8-72323260-4	chr8	72322768	72323768	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4206.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.97356497276012	6.89822786699434	7.09677513773426	6.65592004131554	6.90765601456406	6.83131032662243	-0.280138558914899	0.268229135594943	0.665319558653313
Merged-chr1-162570579-4	chr1	162570087	162571087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347125)	promoter-TSS (NM_001347125)	72.0	NM_001356526	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	8.5965247405326	8.54999320278971	8.58595228546433	8.46388799379831	8.54384184361446	8.42150386168478	-0.135413509390625	0.493107995256762	0.831208279358962
Merged-chr2-45116051-7	chr2	45115436	45116436	+	924.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	1506.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.40847156209178	7.75996033058946	7.46736092805631	7.55407080921647	7.86475293591791	7.76786717420734	0.258305068692469	0.291365565731	0.689051679650718
Merged-chr1-23433298-2	chr1	23432798	23433798	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-50123.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	6.24395216989276	6.41665897130042	6.3417865332042	6.1040162158292	6.41914317593917	6.4744609502946	0.00815383942900374	0.977225300838892	0.994771164142869
Merged-chr18-34778277-2	chr18	34777777	34778777	+	865.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	1269.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	6.34016800644482	6.34750825483194	6.68437956992991	6.74383534233125	6.96477998653865	6.91785845467331	0.671052023859809	0.0130269588120367	0.12107748377811
Merged-chr15-76625207-2	chr15	76624707	76625707	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025842, intron 1 of 9)	intron (NM_025842, intron 1 of 9)	877.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	3.75665708243608	3.61056274846212	4.10140467105892	3.931053026031	3.89874535977124	3.89105196363225	0.248553978537448	0.644282169681605	0.900160672024687
Merged-chr1-84283250-2	chr1	84282750	84283750	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	1395.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.78732925574369	3.6679787068275	4.06391053983806	3.8215421512234	3.54029275798427	3.64645907586836	-0.557624385433642	0.318039032944497	0.711817713144205
Merged-chr6-37143880-5	chr6	37143417	37144417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156059.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	6.05648717174894	5.91027317704202	6.19256767624483	6.45989776274061	6.82992961679903	6.43051181845302	0.902479766037953	0.00216682890464934	0.0328052218882937
Merged-chr19-38022898-4	chr19	38022390	38023390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20687.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.74029282072396	6.83436173586628	6.86090928189863	6.37375536544383	6.68393108006139	6.74294541289971	-0.317951850630126	0.232345875919587	0.628693654960878
Merged-chr11-120046933-2	chr11	120046447	120047447	+	946.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198785, exon 1 of 14)	exon (NM_001198785, exon 1 of 14)	198.0	NM_001198785	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	4.12933674765157	4.10809819607497	4.28460756644988	3.96339508171807	3.78390849307991	4.13362365644983	-0.630303199039488	0.20615972533885	0.596809057329073
Merged-chr14-30828323-3	chr14	30827818	30828818	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	2724.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	4.07457258215406	4.02297413733681	4.20390920710281	4.33413571194046	4.43948070388883	4.13014829421996	0.607575164769688	0.197635409362662	0.585805105555675
Merged-chr9-53603560-4	chr9	53603068	53604068	+	897.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144784, intron 1 of 11)	intron (NM_144784, intron 1 of 11)	6782.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	4.01447339350512	3.85272413807126	3.84403331289131	3.96775570545948	3.70177172527265	3.58396125380084	-0.45610786342424	0.400902768516476	0.777055942689443
Merged-chr2-128779829-2	chr2	128779329	128780329	+	745.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008587, exon 13 of 19)	exon (NM_008587, exon 13 of 19)	-38474.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.96140301059403	3.8382865254448	4.33555981295648	3.7777013087985	3.94156020585669	4.28118218415834	-0.126994444493424	0.814525507104261	0.956366417809675
Merged-chr11-51265408-6	chr11	51264949	51265949	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304744, intron 1 of 10)	intron (NM_001304744, intron 1 of 10)	-1787.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	5.96151808427871	6.13170865256073	6.38864063240006	6.23882900426312	6.18521294324304	6.46534568317671	0.221373197909737	0.458797525366208	0.813236440920954
Merged-chr2-166676649-4	chr2	166676157	166677157	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	37175.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.48713630603016	4.94747087110206	4.4195017797502	5.1558465985787	5.21170811451633	4.73588307906709	0.0448952371924051	0.928437824781481	0.983802612059568
Merged-chr11-105485147-4	chr11	105484658	105485658	+	958.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-28423.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.48732963012361	5.60550011861115	5.61237640540972	5.60826982231048	5.90712116375146	5.59091093948333	0.286053297484445	0.381338226566023	0.763080052613635
Merged-chr16-58690579-4	chr16	58690053	58691053	+	838.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20345.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	4.09348772652962	3.8450321363649	3.90831939040361	3.78947880725304	3.93090211954754	3.92784588257621	-0.216412678781102	0.672710324930871	0.910949422492829
Merged-chr14-46886126-4	chr14	46885613	46886613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	3148.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.08464778083143	4.9494367064095	4.92917166238896	5.14140727066781	5.07862835840221	5.32601629165418	0.388099230137452	0.29163209204473	0.689180216265016
Merged-chr13-42826899-2	chr13	42826399	42827399	+	582.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-39348.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.78756581385386	2.77323760742645	2.8873113376987	2.79860766669367	2.49812844121839	3.1286739777645	0.0789123810521611	0.920417793547279	0.982360480259154
Merged-chr6-113662093-4	chr6	113661635	113662635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23668.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.51526375773685	7.07691519734573	7.18987716607329	7.51266146944508	7.39631730120149	7.23525397653709	0.165558179235774	0.52010993731396	0.846172588154387
Merged-chr16-18424814-2	chr16	18424314	18425314	+	850.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111062, intron 1 of 5)	intron (NM_001111062, intron 1 of 5)	-1603.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	5.65154307213857	6.22098721439208	5.75251069254866	5.93705824916915	5.95594452719537	5.67692189913414	-0.0699958446684848	0.837974971854674	0.962298455078579
Merged-chr18-23888728-2	chr18	23888228	23889228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-65960.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.56639906291962	4.54232847561723	4.39674832675821	4.03294665951281	3.85731038423896	3.99076104792396	-1.55248486415524	0.00109111310046386	0.0192799615339556
Merged-chr2-152962335-4	chr2	152961822	152962822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083618)	promoter-TSS (NM_001083618)	-163.0	NM_029064	74711.0	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	4.85584893680392	4.62420518483201	4.70077987805613	4.75712511723149	5.02376829687478	4.64327486274828	0.225685781241173	0.584885669871423	0.874754719025748
Merged-chr1-13360855-4	chr1	13360361	13361361	+	894.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	RLTR12BD_Mm|LTR|ERVK	11568.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.85451279578702	2.74225337811967	2.95940115776672	2.95783688309631	2.63017352928321	3.25234229359779	0.540393564402762	0.476982630313385	0.82305988476216
Merged-chr13-4650413-4	chr13	4649905	4650905	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41241.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.22658155239971	3.11312644405343	3.53536498866385	3.02756562347954	3.15352247948957	3.29526031080916	-0.563809059107089	0.39251853008023	0.771172125304963
Merged-chr2-176708452-2	chr2	176707952	176708952	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	99.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	4.2806922249984	4.5284976081338	4.21045894986881	4.0151160019326	3.95990547196273	3.87473712015713	-1.13505345956343	0.0207819214037808	0.165602577682991
Merged-chr7-118118585-4	chr7	118118098	118119098	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019419)	TTS (NM_019419)	-2451.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	6.68686771167567	6.70856261801852	6.75734969443913	6.96603164984418	7.23387293110235	7.01737617804276	0.567196064588106	0.0233096477558055	0.178694414083754
Merged-chr9-105121384-4	chr9	105120897	105121897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	6.15585350992652	6.36501937288755	6.41404907380367	5.58772184190177	5.27351024560364	5.7914946341589	-1.34979933060439	3.34618112553807e-05	0.00112861385931809
Merged-chr12-26415282-4	chr12	26414797	26415797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081977)	promoter-TSS (NM_001081977)	-35.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	3.85665458949143	3.69583968801583	3.5333471124177	3.4294929062299	2.89964281430565	3.04943920739906	-2.27718648087126	0.00209111719173169	0.0319613665116845
Merged-chr10-118604149-3	chr10	118603657	118604657	+	739.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47632.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	3.41724456103323	3.57837102082102	3.47210883188161	3.65599249998173	3.78864960963012	3.80802858813862	0.901910576302388	0.10664969408764	0.435916169724877
Merged-chr19-53906316-4	chr19	53905842	53906842	+	889.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168491, intron 1 of 11)	intron (NM_001168491, intron 1 of 11)	2991.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.46037183695056	4.33196856100482	4.72866224978188	4.82169031120045	4.61600965907191	4.79386547014036	0.569571995371006	0.182747428465927	0.565574947102317
Merged-chr8-71299081-1	chr8	71298581	71299581	+	542.0	f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	26367.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	5.15508272201528	5.00694010985069	4.78124668391866	4.56384183900935	4.66593655305892	4.45945571610046	-0.970029682128563	0.0191209515310662	0.156812156021778
Merged-chr1-74362078-4	chr1	74361589	74362589	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033345)	promoter-TSS (NM_001033345)	-19.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	4.06761080139038	3.90519147982484	4.02121852191335	3.84408403851615	3.96411994394303	3.84168778331472	-0.333813655514082	0.508323709121457	0.839818423824339
Merged-chr6-51629806-2	chr6	51629306	51630306	+	698.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84513.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	2.55101503765619	2.44312841934634	2.64736353929401	2.71699519657364	2.40466631822542	2.84104415194184	0.645755693907477	0.423354294205151	1
Merged-chr17-56673242-4	chr17	56672733	56673733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027933)	promoter-TSS (NM_027933)	8.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	7.45120942498596	7.40313781259196	6.93089464280531	7.5040002540393	7.39141059703264	6.97436366219244	0.0376622011999409	0.894693840562425	0.975576532925631
Merged-chr2-164833606-4	chr2	164833039	164834039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	57.0	NM_001082974	415115.0	Mm.474586	NM_001082974	ENSMUSG00000039873	Neurl2	Neur2|Ozz|Ozz-E3	neuralized E3 ubiquitin protein ligase 2	protein-coding	8.44687865029725	8.82852642595717	8.35334573034411	8.48532949015551	8.87898560809513	8.27583186877047	0.0200018134930621	0.939606583603306	0.986720663284284
Merged-chr3-19215896-4	chr3	19215389	19216389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	27594.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	6.38347130394927	6.8695392662795	6.49767971073228	6.64558456309547	7.05640742089674	6.53904977437578	0.269078008357658	0.380718537680939	0.762757104963776
Merged-chr13-108044452-4	chr13	108043944	108044944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-30.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	7.23698677786277	7.18459330454418	7.30113572736511	7.43928502398795	7.41185669080745	7.65520617916326	0.387500268925119	0.0957352968057555	0.412529392885205
Merged-chr2-160192897-2	chr2	160192397	160193397	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134597.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	2.88600263234702	2.86574913061293	2.92105702587478	2.73997331776994	2.72638384533277	2.99300608360837	-0.357510007018163	0.615899900990768	0.888134787410948
Merged-chr14-31165173-2	chr14	31164673	31165673	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	3468.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	5.62094140513211	5.611696914469	5.58474775238628	5.20347543994503	5.30383141005657	5.22314583943214	-0.6963560462626	0.0359782698452644	0.23322529427273
Merged-chr11-74522774-4	chr11	74522311	74523311	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	CpG	67347.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.30389119894735	5.3531335255678	5.51725875077941	5.3898685530912	5.05897324388199	5.15223469082904	-0.365371237151492	0.30550596839208	0.701604675920959
Merged-chr11-74533198-2	chr11	74532698	74533698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	56960.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.25198027864903	3.44282437830932	3.28125951666683	3.45389871306084	3.25525615818141	3.10974275960983	-0.185437463292771	0.770505656779643	0.943392092118189
Merged-chr4-131920366-4	chr4	131919930	131920930	+	956.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102393)	promoter-TSS (NR_102393)	-401.0	NR_102393	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	7.06766209458917	6.88938622242086	6.86636881662992	6.19841536794061	5.94210684591591	6.28538808728499	-1.30465768522749	2.0263098998867e-06	0.00010084042712307
Merged-chr14-46820950-1	chr14	46820450	46821450	+	779.0	f1_c57bl6.idr	intron (NM_022023, intron 1 of 6)	(TC)n|Simple_repeat|Simple_repeat	1292.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	5.84641342960733	5.78327553673658	5.69772852354054	6.2421285373519	6.02980191324962	5.58541370623905	0.371699523066401	0.265392087002253	0.66310566258133
Merged-chr10-87862210-4	chr10	87861713	87862713	+	774.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	1102.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.41775100893099	7.05401311862604	6.63782642176865	7.14591059837566	7.30663706773529	6.74784352748056	0.548815120328446	0.0776138654681217	0.367647416479077
Merged-chr4-19856282-1	chr4	19855782	19856782	+	825.5	f0_balb.idr	Intergenic	Intergenic	37555.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	4.85449531788714	4.90329503647633	4.97954319709482	4.39138350516684	4.1752998742741	4.56452272428225	-1.31215938210422	0.00218190015524709	0.0329913770884609
Merged-chr18-12655275-4	chr18	12654773	12655773	+	777.641663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	11740.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	3.33395087438619	3.02697333892646	3.2177321006613	3.58305599722204	3.45637511551427	3.62300301152428	1.39060789630611	0.0274130985523209	0.197367795619689
Merged-chr3-116122443-2	chr3	116121943	116122943	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	7245.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.37969908123627	5.57351286818222	5.21738676083213	5.27365502125676	5.62647530207379	4.98523025796168	-0.127831767887971	0.742615693141573	0.935314714219692
Merged-chr17-35166525-2	chr17	35166026	35167026	+	968.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1649.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	5.13502443849988	4.94877909312634	5.53938793379403	5.13234835818836	5.28203081304049	5.67520806511732	0.310046679427674	0.437609289656014	0.800064171761167
Merged-chr1-91494574-4	chr1	91494043	91495043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028718)	promoter-TSS (NM_028718)	-125.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	3.79994368127686	3.3421903839591	3.47150807348348	3.76750631438772	3.51210843489126	3.36597173963535	0.0180426970550783	0.976800033006933	0.99476201281709
Merged-chr19-5018944-4	chr19	5018436	5019436	+	848.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5070.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	4.62251861623207	4.65247718305112	4.84259976120948	4.81401511220244	4.63951619065709	4.59733270897899	-0.0311466014979698	0.939241752374179	0.986642049891601
Merged-chr9-122950399-4	chr9	122949907	122950907	+	822.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	593.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	7.00207174640191	7.68774408349728	7.27142215858822	7.54874946506867	7.82793611357939	7.37492509253887	0.359477835331926	0.215674752872503	0.609077682494408
Merged-chr5-139380566-4	chr5	139380064	139381064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030258)	promoter-TSS (NM_030258)	-75.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	8.35914870994863	8.16652561347141	7.86300347296773	8.06701801188297	8.28006513227451	7.77957796897357	-0.120468684561597	0.639895638421053	0.898255496259518
Merged-chr10-88679312-1	chr10	88678812	88679812	+	570.0	f0_c57.idr	intron (NM_011461, intron 3 of 5)	B4A|SINE|B4	3711.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	4.18086724966036	4.09881932334789	4.27588170678705	3.99676783162351	4.07344041002277	4.07095729136555	-0.384624492791203	0.41919469301085	0.788850311023746
Merged-chr11-75541151-4	chr11	75540667	75541667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	9055.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	6.91950959884145	6.6554259873061	6.85303199842579	6.66666468562959	6.71323174830225	6.5258445617993	-0.264912832522341	0.310735860771868	0.706022433069834
Merged-chr6-120836676-3	chr6	120836169	120837169	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	439.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	8.17810268237471	8.52863210130461	7.72331490121829	8.28998925286312	8.22224979347166	7.920813675787	-0.0513847032677173	0.85436436532451	0.965987623019113
Merged-chr6-113641639-2	chr6	113641139	113642139	+	614.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	G-rich|Low_complexity|Low_complexity	3172.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	4.6294905124621	4.71070205530342	4.64459018961744	4.76813354211036	4.98983374008768	4.71154198232741	0.404354525654213	0.315348684051907	0.709692649130764
Merged-chr5-3490040-2	chr5	3489540	3490540	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	L1_Mur3|LINE|L1	-53793.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.90964384964521	5.95197516014461	5.98258044917076	5.83097921123205	5.76198588444494	6.21005188117995	-0.0192378774903058	0.950979377968531	0.988570979482657
Merged-chr10-117885546-4	chr10	117885053	117886053	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.26340857647302	4.09411292372198	4.28554175123944	4.51722636446139	4.32732922364962	4.44022486322856	0.569432609061937	0.20774968157619	0.598674450027552
Merged-chr18-76254826-3	chr18	76254216	76255216	+	662.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010754, intron 1 of 10)	intron (NM_010754, intron 1 of 10)	-6405.0	NM_001252481	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.83398334350772	3.19067200120526	3.06239014258871	2.95924782970874	2.80473883932102	2.89430699101887	-0.726399702275537	0.305542541244216	0.7016520242849
Merged-chr4-119541947-4	chr4	119541436	119542436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357177)	promoter-TSS (NM_001357177)	-400.0	NM_001357177	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	5.35717113386049	5.72008307249602	5.57085294176464	5.26323852923609	5.42954896083215	5.6593545530362	-0.201632609639327	0.564322059709027	0.866276147417766
Merged-chr10-42780926-1	chr10	42780426	42781426	+	729.5	f0_balb.idr	intron (NM_001359285, intron 1 of 19)	MLT1D|LTR|ERVL-MaLR	19430.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	3.05696443309032	2.94831843543961	3.00940718923585	2.96347597543352	2.83697751142852	2.96227895428576	-0.414197557681999	0.542319460767857	0.857068480766623
Merged-chr10-81378651-4	chr10	81378158	81379158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019757)	promoter-TSS (NM_019757)	-288.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	7.49774359119892	6.90631184309816	6.78299469068592	7.3596600559558	7.12561974905185	6.85792470309312	0.0359547788818004	0.907942690865748	0.979071516420527
Merged-chr19-34527519-4	chr19	34527010	34528010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-36.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	7.45615724948212	7.50430772135948	7.25791549585101	7.55251426176189	7.62794544363005	7.27930514214398	0.127479115456144	0.599104575032091	0.880902871165758
Merged-chr10-95291340-4	chr10	95290845	95291845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32364.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.40658463922772	6.31765895555423	6.41432334012115	6.39892403747132	6.58703996665365	6.37956221621923	0.143501868395385	0.594772294543267	0.87924603206665
Merged-chr12-100198503-2	chr12	100198003	100199003	+	581.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	-932.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	5.89096574307534	6.09927332200264	5.95159712006141	5.83366308040144	6.26284847132403	6.1032492539936	0.170269303100835	0.581992541258533	0.873497302863014
Merged-chr8-3516826-4	chr8	3516310	3517310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	-53.0	NM_001359124	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	4.33939419237488	4.35626667645219	4.53944877460376	4.4327587820015	4.50426747903479	4.52465316443077	0.203410010200776	0.637309169112803	0.897338937840938
Merged-chr7-16397876-2	chr7	16397376	16398376	+	681.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-3320.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	2.33568060625689	2.33542505604288	2.57977818418329	2.39636564720651	2.16401693106158	2.46867591713282	-0.465338255197805	0.588518643393313	1
Merged-chr16-91595956-2	chr16	91595456	91596456	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1724.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	3.48733596974067	3.3009529135429	3.12431312919276	3.4056705477951	3.34218599121474	3.32015994019521	0.14656561315907	0.81528417842992	0.956370078970016
Merged-chr15-8443719-4	chr15	8443198	8444198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	CpG	765.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	7.96159150376342	8.27677060155979	7.83924131983914	8.10983243080433	8.09315309184732	8.25511230397774	0.149962827985624	0.52082855274496	0.846742927870637
Merged-chr6-135188342-4	chr6	135187843	135188843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040296)	promoter-TSS (NR_040296)	-137.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	4.99640275163379	4.95084227697556	4.95654193184839	4.92950885871229	4.94991441211864	4.87385310086209	-0.103428797779628	0.781467688380155	0.946221819189988
Merged-chr7-35119255-4	chr7	35118745	35119745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-48.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	6.96924305961871	6.87052500280773	7.00347959661586	6.94477060943413	6.9722975453785	7.11222504624241	0.0943085382911792	0.697283964550575	0.919874864928276
Merged-chr10-60704767-2	chr10	60704267	60705267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8277.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	3.94744051779144	3.98452833647907	3.91224831099557	3.53878728131529	3.73740677190589	3.615424154646	-1.01655485755653	0.0599090968205732	0.316866930960178
Merged-chr12-108179490-4	chr12	108178964	108179964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028262)	promoter-TSS (NM_028262)	-180.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	7.75582749984512	8.25828573357951	7.68906084367713	7.94858921119245	8.1076646838145	7.78177840375009	0.0321323170851626	0.902803584238866	0.977585531827525
Merged-chr5-24876756-4	chr5	24876278	24877278	+	938.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 9 of 15)	intron (NM_145401, intron 9 of 15)	-25791.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	3.41869042312822	3.3274548611381	3.62253444944266	3.10515340898277	2.97630604198975	3.54429826550929	-0.929946449547687	0.170591767940897	0.548085365220211
Merged-chr5-108065625-4	chr5	108065053	108066053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253877)	promoter-TSS (NM_001253877)	-121.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	6.25331578714005	6.53682029943449	6.37102684198138	6.39898266981116	6.13948386300238	6.44899772159089	-0.11066049796784	0.699507035250472	0.920619136555148
Merged-chr12-100626795-4	chr12	100626283	100627283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 3 of 17)	L1M4b|LINE|L1	98337.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	6.40064745888006	6.57521157062878	6.59209601027521	6.40793100429982	6.82752223820174	6.77666685799725	0.259717431071617	0.352014415825486	0.739656957373914
Merged-chr2-102009816-4	chr2	102009293	102010293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	123531.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	4.09663556617986	3.92828608950421	4.19462527587964	4.10256078823539	4.19287661105523	4.21748742873482	0.286040440719185	0.550000588806267	0.860509903840749
Merged-chr14-122558292-2	chr14	122557792	122558792	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 2 of 24)	intron (NR_153443, intron 2 of 24)	23964.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	2.7105038961309	2.89521952054167	2.57907740186799	2.70720202925129	2.62121450331961	3.02151743953626	0.265533926604304	0.734402605489	0.932426757820458
Merged-chr17-51221302-4	chr17	51220815	51221815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41963.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	7.75924031968768	7.89526256809137	7.58368926338588	7.88914019227215	8.15277877346502	7.90593704202014	0.335265465110402	0.148656243529143	0.514469438571431
Merged-chr12-113014517-8	chr12	113014038	113015038	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	30.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	6.17315040710072	6.3604711342543	6.6241373076339	6.27910874949056	6.11166645567217	6.62074736551349	-0.0782305242194207	0.800947175283973	0.95272776419586
Merged-chr6-57703909-3	chr6	57703427	57704427	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	Lx8|LINE|L1	1472.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	5.79162392938669	5.84029997939121	5.35654886496003	5.56187145892013	6.08246569221854	5.77716108610577	0.255224652212317	0.474339777255736	0.82139231300766
Merged-chr11-115047237-3	chr11	115046763	115047763	+	848.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199201, intron 1 of 3).2	B4A|SINE|B4	1032.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	6.12651276694423	6.25578352021352	6.08800359797016	5.60944274031027	5.66902541258433	5.0593489926961	-1.1933896627174	0.000784002003627432	0.014951922694896
Merged-chr3-142278243-4	chr3	142277715	142278715	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-108790.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	4.04782018906186	4.26604569596332	4.44969131344489	5.62968973172658	5.70648714058802	5.91919206803169	3.42149163298666	2.57659334889525e-15	7.52256769736406e-13
Merged-chr1-149917300-3	chr1	149916789	149917789	+	838.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	5150.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.16158314154268	4.5722565972676	4.0525723247298	4.31763428093255	4.21382882810437	4.26990576706374	-0.0732830507769286	0.88086190310457	0.972620786559158
Merged-chr17-79095832-4	chr17	79095356	79096356	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	43950.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	2.87355710303627	2.64052209978693	2.68687582616811	2.91750082964754	2.73853302097171	2.94705988718324	0.648717795924897	0.378983221615056	0.761535799081011
Merged-chr9-57763995-2	chr9	57763495	57764495	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	1865.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	5.05297570498562	5.30694906947063	5.19848376415448	5.42051107646252	5.2118055278888	5.29479482600976	0.23789949021561	0.502872942813068	0.836691193058519
Merged-chr2-165857717-4	chr2	165857250	165858250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	423.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	8.50326474629844	8.51078102081369	8.3210564108934	8.26612715570002	8.51554913544184	8.25748601474666	-0.131372384249008	0.542605683774454	0.857318248006765
Merged-chr12-75726531-3	chr12	75726059	75727059	+	954.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	9170.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	5.91080610508485	6.01280841356188	5.85203602586345	5.65703094002564	5.39714404024333	5.1609550022484	-0.92011601882385	0.00650130661638606	0.0740534867811433
Merged-chr14-70056334-4	chr14	70055899	70056899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21046.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	6.64752615417789	6.46198835824695	6.28741343785271	7.11063159285743	7.1430241456779	6.80371894302584	0.861107414271775	0.00165854443394431	0.0267449932673717
Merged-chr6-97487935-4	chr6	97487426	97488426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-106.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.59324132968896	7.69311514537705	7.72238365750659	7.88305478965725	7.76780400823431	7.84585552080905	0.234309271929555	0.277659277233702	0.674855968126621
Merged-chr11-21048187-4	chr11	21047702	21048702	+	696.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43122.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.39466429883039	6.65054340968861	6.55706115410306	6.32213352165801	6.3610752469428	6.53112482338739	-0.222001735713482	0.415023186597499	0.786118101437797
Merged-chr9-13495742-3	chr9	13495246	13496246	+	898.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64385.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	3.56538162842799	3.62666810544301	3.11403998460371	3.19479884892349	3.02138611366723	3.36470385670597	-1.10737982116877	0.106637754237624	0.435916169724877
Merged-chr5-93193603-4	chr5	93193103	93194103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12892.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.97153744711044	6.11686182201816	5.94027477747408	5.98031073792062	5.60836625465947	5.77756804276361	-0.393037945613556	0.207467157023787	0.598264675156309
Merged-chr6-114872953-1	chr6	114872453	114873453	+	797.0	f0_balb.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	48868.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.52127672063687	3.73800239929468	3.63405642508701	3.31394505134234	3.23297348389652	3.43710706636383	-1.18614964406964	0.0465113236245589	0.272927659813279
Merged-chr17-88517749-4	chr17	88517243	88518243	+	969.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-12381.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	3.80387720717476	3.56499847832123	3.75705698492256	3.71955542598623	3.74220125625585	3.67015122837329	0.00911866541368697	0.986571186961173	0.997063455776714
Merged-chr2-25427088-4	chr2	25426585	25427585	+	973.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013524)	TTS (NM_013524)	-1589.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	3.98271826782338	3.63294612199462	4.2546038594915	3.95945340104187	3.63335030567667	3.97146776027488	-0.351467875588552	0.534357370155616	0.853068627162717
Merged-chr18-31920826-2	chr18	31920326	31921326	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8923.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	2.61759712883205	2.51088757409784	2.6528874594995	2.90422992481983	2.56326069405338	2.85080130313471	1.00608813560276	0.192590687802736	0.579601410786647
Merged-chr15-8712284-2	chr15	8711784	8712784	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1477.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.32908193481666	3.2750747751813	3.14799197201494	3.49839620862213	3.64236047194465	3.82182422666302	1.50232439896638	0.0150486219747547	0.133025150034568
Merged-chr13-100199023-3	chr13	100198579	100199579	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	Lx9|LINE|L1	3043.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	4.59382814503873	4.63827990612615	4.52110820878636	5.00505609227039	5.13898194928093	5.08970945874121	1.10392129277629	0.00467106046959672	0.058437768689551
Merged-chr7-16739150-2	chr7	16738650	16739650	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	706.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	4.96761863149191	4.73376750000831	5.06155980983534	4.93173871396082	4.76930226346913	5.21907106521295	0.115370324819643	0.77456300523921	0.944477929413368
Merged-chr6-113664512-3	chr6	113664002	113665002	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	26035.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.73534536823347	5.39123895413244	5.74075810497723	5.36719974644368	5.29737649166077	5.67738653486419	-0.344429375528308	0.32564657141619	0.718159390122652
Merged-chr9-52174793-4	chr9	52174291	52175291	+	855.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6680.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	3.49871314120659	3.10908727421625	3.15378842704676	3.04667679187322	2.82893722112158	2.77669234496471	-1.75561059780129	0.0181787849465758	0.151900013841602
Merged-chr15-38383566-2	chr15	38383066	38384066	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82855.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.56365697129583	3.58364938695912	3.64778104620468	3.81981702166111	3.59705711942241	4.00882440773495	0.715583697575337	0.197873248310023	0.586043439320662
Merged-chr4-83269841-4	chr4	83269351	83270351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	54338.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.36323322791115	5.55141137706167	5.53833957929136	5.08676942896434	5.16246421059424	5.31085383938236	-0.598184686517132	0.0834378446393025	0.382286007199333
Merged-chr5-66150150-1	chr5	66149650	66150650	+	648.0	f0_c57.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	828.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.95243958781054	7.18717655542184	6.86303584990481	6.95644717729644	7.10821242740743	7.00688320530971	0.0192993376800231	0.938910648746776	0.986550175078409
Merged-chr9-51009775-2	chr9	51009275	51010275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-702.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	3.25064476933618	3.24835211173148	3.30419410711326	3.10543662700136	3.49723075443745	3.14106057514451	0.016961952901069	0.979254097742404	0.995177657748265
Merged-chr13-59835336-4	chr13	59834849	59835849	+	871.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12202.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.07289524290276	4.26647908055618	4.35896876806933	3.77284849659143	3.58263377866321	3.93652726157352	-2.50368885186432	1.15133906909788e-05	0.00045190107529029
Merged-chr8-70752527-4	chr8	70752011	70753011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	7.93697864415231	7.8535307954812	7.55239865422157	7.70505712520805	7.8727497617005	7.51659852677651	-0.121390664465729	0.619674170660993	0.889868376148509
Merged-chr1-24695870-4	chr1	24695445	24696445	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	17027.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.48712863768652	4.57026967752513	4.67820914185226	4.3975692931789	4.52675228292054	4.27642950765645	-0.404608416331696	0.35420934481642	0.74142310232151
Merged-chr7-67245269-2	chr7	67244769	67245769	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	intron (NM_001357324, intron 8 of 11)	22653.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	6.03421630281998	6.42862695354895	5.91194285933814	6.04358649499195	6.3667355245772	6.11642128740542	0.0582151173779468	0.855227520932228	0.966123042475177
Merged-chr10-89443926-4	chr10	89443424	89444424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	43.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	8.67100017521613	9.17932170277024	8.61004162901119	8.4184484183714	8.79953592459912	8.2907372645336	-0.453643932146124	0.0910917869500696	0.401694635212696
Merged-chr18-53265714-4	chr18	53265275	53266275	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	B1_Mur2|SINE|Alu	20113.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.18004528835946	8.54130510670952	8.22752944077553	8.07884888416352	8.57333050692418	8.1282486881645	-0.0591069722478103	0.815627628628106	0.956462367141432
Merged-chr15-78406686-4	chr15	78406236	78407236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	24.0	NM_001162493	246221.0	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	6.18485469049356	6.42089112814561	6.53808380607581	6.89026944633461	6.51737241180385	6.72673829566796	0.534813565814502	0.0595259279288932	0.315843040992919
Merged-chr2-34371352-3	chr2	34370884	34371884	+	836.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 1 of 7)	CpG	661.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	4.15446286799659	4.11393380181035	4.04574819639726	4.24523136547978	4.18383407310711	3.90808430260991	0.057489576974812	0.906291152581217	0.978634961443839
Merged-chr1-7100744-4	chr1	7100246	7101246	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	11826.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.5156614485743	4.51799112075977	4.35931865208236	4.83498660260217	4.53075735978985	4.68522882422106	0.517320611292323	0.226055339132258	0.621097341012672
Merged-chr11-118180421-2	chr11	118179921	118180921	+	850.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	32321.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.87330588577479	2.66191582435868	3.02396382665895	2.72194979160803	2.64850400467176	3.09529098293159	-0.130532750839026	0.864052803775979	0.968269312109804
Merged-chr11-34773745-4	chr11	34773160	34774160	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	10245.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	5.29652105133806	5.14603828993869	5.20321621657759	5.26190861605425	5.07484127534902	5.20168822282038	-0.0822149614825153	0.816432600864872	0.956664796338092
Merged-chr13-37998306-3	chr13	37997810	37998810	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4102.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.0232542064823	5.01864559809783	5.18287266454679	4.98103426119911	4.67288660226215	5.08600556728376	-0.345827568293847	0.375058613822881	0.758377211092613
Merged-chr4-128618743-4	chr4	128618258	128619258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-139.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	7.53727131583151	7.09263111814701	7.06592370520052	7.40248209815219	7.35806906878273	7.32106298851613	0.153770470369225	0.55300737604923	0.862020190076889
Merged-chr17-5589139-4	chr17	5588624	5589624	+	960.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	96524.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.70989032209636	6.82551599315758	6.41143693778447	6.64556132341478	6.74350120927387	6.49059584642837	-0.0525792876834156	0.848979822685347	0.964486887293016
Merged-chr3-9725569-8	chr3	9725029	9726029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	108150.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.17576766140952	6.02913584544211	6.04566732813234	6.31596521943654	6.2711539335015	6.23644012910746	0.317969037228243	0.254713843780348	0.651754308411513
Merged-chr12-87441448-4	chr12	87440967	87441967	+	899.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102565, intron 1 of 5)	intron (NM_001102565, intron 1 of 5)	2372.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	6.21839040555752	6.67658721543729	6.68668002353889	7.00327042770585	7.46103364503788	6.98341788579382	0.980569731463852	0.00099757159607749	0.0179862015971845
Merged-chr8-13623190-2	chr8	13622690	13623690	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	54397.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.93674119577075	4.14030382882534	3.82702505886752	3.62278643258438	3.25429241549518	3.63146442380778	-1.63361856846533	0.00578122345908435	0.0678865427015933
Merged-chr1-170554684-2	chr1	170554184	170555184	+	579.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	MLT2C1|LTR|ERVL	2426.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.33669292082664	3.06733670904708	3.34987279024763	2.88867730006163	2.67687833781874	2.96682913366907	-2.0370538069459	0.00620312637644465	0.0714501568899098
Merged-chr17-35811721-2	chr17	35811276	35812276	+	728.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9937.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	2.2614155434124	2.30432264465346	2.39468161995018	2.4454527803199	2.29502510105311	2.59396909747462	0.810926879962262	0.330995528675106	1
Merged-chr4-45949306-4	chr4	45948793	45949793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198660, intron 36 of 37)	intron (NM_198660, intron 36 of 37)	-16042.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	4.71883314640518	4.68047220610323	5.07482276507956	4.81215753505913	4.93525821543234	5.25936983294301	0.400769363135656	0.329449354923568	0.721399184090983
Merged-chr19-60579767-1	chr19	60579267	60580267	+	674.0	f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	1256.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	5.82469320075204	5.7898208206632	5.7150080931562	5.8116512920041	5.75818126066677	5.82838940805432	0.0285578624641297	0.924759129663911	0.983070278897208
Merged-chr7-90216708-4	chr7	90216201	90217201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48731.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.40680856303921	4.33547440393464	4.10225713507127	4.28515379327562	4.2116084670302	4.22019869454578	-0.156145390447335	0.736125737924698	0.933046642264646
Merged-chr4-123139610-4	chr4	123139116	123140116	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019489, intron 1 of 9)	intron (NM_019489, intron 1 of 9)	325.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	6.59617977804764	6.7895334803012	6.41047056444088	6.73226323191019	6.58522540957012	6.69913472766432	0.0830371198394872	0.758256304894868	0.940104678746179
Merged-chr13-24804581-2	chr13	24804081	24805081	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 1 of 4)	intron (NM_024473, intron 1 of 4)	2924.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	5.50285747905618	5.50064415802599	5.19086034730769	6.26503362739084	6.24656006009039	5.53597185447805	1.17681477678159	0.00146598531064553	0.0243136746518225
Merged-chr6-146127011-4	chr6	146126448	146127448	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	192826.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	4.37135288731945	4.4853499826864	4.35484427473643	4.24588192487042	4.21517085488803	4.09399574912648	-0.584642232711494	0.198991587379518	0.587423864896856
Merged-chr2-59132455-3	chr2	59131959	59132959	+	857.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	RLTR13B4|LTR|ERVK	28224.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	2.91262677688531	2.80590708195414	2.91711366599509	2.63825836173382	2.96577694557697	2.86948366042154	-0.210975140698161	0.773363531790147	0.944067559391607
Merged-chr18-84584439-4	chr18	84583929	84584929	+	762.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	5075.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	3.39221066959507	3.39138147777625	3.49080257748802	3.70258080431949	3.43681639145298	3.56184112423407	0.53915137378784	0.351653879578709	0.739403630741215
Merged-chr3-108151493-4	chr3	108151010	108152010	+	943.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3422.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	5.73923023283528	5.81581818568644	5.97318551446342	5.62436559471594	6.19179973490765	5.89431879187342	0.167320231847061	0.614448657830293	0.887452811455156
Merged-chr13-81155547-3	chr13	81155055	81156055	+	835.0888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	191481.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.44374650294433	2.46990144217167	2.3315878874212	2.4685814809109	2.42165313425635	2.6625181407301	0.592873409933497	0.466894954423115	1
Merged-chr11-116143972-2	chr11	116143472	116144472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 30 of 30)	intron (NM_172571, intron 30 of 30)	-5104.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	4.66951291193433	4.39775310916726	4.27520710993292	4.11913617036048	4.22106888769231	4.151995076689	-0.792118355970538	0.0905241496724387	0.400208992399144
Merged-chr11-43470358-3	chr11	43469856	43470856	+	775.272217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3950.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	2.65599132158877	2.98917736611032	2.80173891957902	2.46773922665448	2.53621866592617	2.41898018939994	-2.0468247338557	0.0168867410002563	1
Merged-chr10-126982000-2	chr10	126981500	126982500	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	3283.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	3.55444373137841	3.64798663693082	3.69010736190892	3.74042353322416	3.37865615490553	4.11469877684764	0.479618106168304	0.431411791689722	0.796881045962937
Merged-chr11-3539333-4	chr11	3538855	3539855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284429)	promoter-TSS (NM_001284429)	-63.0	NM_001284428	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	3.9230192771956	3.74007905520283	3.76683072941558	3.72887498782812	3.6124113963327	3.56585191176708	-0.586792550597013	0.279887468613643	0.67759314775688
Merged-chr16-75933499-1	chr16	75932999	75933999	+	641.5	f0_balb.idr	Intergenic	Intergenic	-24233.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	2.40605704751924	2.49115077177736	2.55153846048536	2.28017420164754	2.3568609684568	2.43687933720638	-0.795147592744456	0.333287610212361	1
Merged-chr2-168541390-4	chr2	168540798	168541798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	49067.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.44451365584745	6.22313798723182	5.96133311293012	5.73752490533117	5.26613911650874	5.44048170599501	-1.31812972835522	0.0001075762430449	0.00301488852518694
Merged-chr5-64923149-4	chr5	64922648	64923648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9551.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	5.7120942772227	5.78146623853476	5.67262505431925	5.42508116676597	5.58337430239135	6.03844801714779	-0.0520871962163809	0.879657279043324	0.97219374767077
Merged-chr13-20092536-4	chr13	20092042	20093042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	2035.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.26068780574392	6.24349897578882	6.1226543961396	6.09381174219261	6.32527223450813	6.16147949084023	-0.0189323197461488	0.946724218622997	0.988007649185823
Merged-chr5-7980836-4	chr5	7980341	7981341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054098, exon 5 of 5)	3' UTR (NM_054098, exon 5 of 5)	20369.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	3.69072926496812	3.67273194509162	3.86694041991277	3.83487255298488	3.44763222356167	3.83910190212776	-0.0967843650357432	0.863643597818574	0.968269312109804
Merged-chr13-9380932-4	chr13	9380441	9381441	+	921.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	104416.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.50144431477962	5.10548455865384	4.93076892305379	5.1213692693708	4.94746288272624	4.91956810510518	-0.442817040919274	0.263248950993669	0.661245508491251
Merged-chr13-30761998-2	chr13	30761498	30762498	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347508, intron 8 of 8)	intron (NM_001347508, intron 8 of 8)	12765.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	2.58301381837752	2.73356435688381	2.94825461389846	2.44206880907575	2.67432085061011	2.73003930587351	-0.747680299774827	0.348506215774894	0.736376465266566
Merged-chr10-59310853-4	chr10	59310340	59311340	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12456.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.79949997436968	5.9250870467321	6.00798175416041	5.80946813457271	5.70121790569358	5.88554564044579	-0.204760169652927	0.500590347930794	0.83513356465285
Merged-chr3-127277927-2	chr3	127277427	127278427	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	Lx8|LINE|L1	116622.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	2.52740209402468	2.76358432931163	2.75383853770429	2.58002923821925	2.67740631694148	2.64138670094171	-0.275834769287224	0.717741924464407	1
Merged-chr1-127270647-5	chr1	127270135	127271135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	C-rich|Low_complexity|Low_complexity	65649.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.59670238629017	6.88134334547431	6.68799077568934	6.55838307787759	6.83914351143994	6.73084732376573	-0.0195631101970438	0.941672187846578	0.987044445549883
Merged-chr17-34293726-4	chr17	34293188	34294188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	5.45893306563419	4.94766884282297	4.80763717251491	5.95729537136917	5.91928582937851	5.31211872369265	1.24868959441545	0.00297392896166697	0.0418351109116459
Merged-chr15-73061138-4	chr15	73060634	73061634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	70.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	7.11460212355522	7.45268624909752	7.35755870512233	7.00981213728103	7.09598783188995	7.12630432955763	-0.357489781130708	0.145432584352438	0.508580082323175
Merged-chr15-53400537-4	chr15	53400013	53401013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-54330.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.44898727125759	7.67797431237297	7.44058504708374	7.59325367634992	7.85434830821282	7.32996960330474	0.131136526320934	0.6080801770052	0.884873969833456
Merged-chr17-34264869-7	chr17	34264413	34265413	+	948.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207105, exon 2 of 6)	exon (NM_207105, exon 2 of 6)	1686.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	5.65620941574967	5.18414408438011	4.95181510545681	5.61840907777541	5.0100105504374	5.60214371446387	0.247946292029391	0.560576491019132	0.865261302076164
Merged-chr1-78674848-4	chr1	78674349	78675349	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028817, intron 2 of 15)	intron (NM_028817, intron 2 of 15)	16409.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	4.05643771834478	4.16837187159144	4.48179345664921	4.14227826545491	4.02930752299166	3.92320339416506	-0.56771182862416	0.254979641905444	0.652024436103169
Merged-chr18-69584656-2	chr18	69584156	69585156	+	804.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	238496.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.22097992314276	5.25044834254782	4.74738463902454	4.72031609224866	4.44228881823433	4.68999630230197	-1.09907488964113	0.00876614558441516	0.0919003958407479
Merged-chr12-40625431-2	chr12	40624931	40625931	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 3 of 52)	intron (NM_172803, intron 3 of 52)	179378.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.69585441861828	4.08855531660372	4.50281690020926	3.84423450487165	3.94835317766393	3.93807340057535	-0.63728320029182	0.256332185884912	0.65342976180494
Merged-chr16-3929348-4	chr16	3928854	3929854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20345.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	5.63174959770077	6.14248578003606	6.0703900733654	5.69240538989631	5.92959846004894	6.19166872305886	-0.0320115803329383	0.925128326693415	0.983120489108249
Merged-chr13-75845403-4	chr13	75844923	75845923	+	883.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	5537.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.12933340427639	5.02264337258591	4.96712963689423	5.00613461746831	5.24564757014796	5.13787414444436	0.194394395780414	0.596238168050618	0.879909387076956
Merged-chr17-23925317-3	chr17	23924832	23925832	+	988.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7874.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	5.79797002069783	5.84142212176079	5.89771047375743	5.96292253494839	5.94343873225475	6.3121773885959	0.400823089060343	0.190955067411486	0.577487433640144
Merged-chr11-101581437-7	chr11	101580911	101581911	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	-831.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	6.71961337950078	6.28402055424451	6.4882523344951	6.41084709561644	6.60563310298836	6.54759417673486	0.0234856730428116	0.934027156610204	0.985700373477689
Merged-chr3-87360586-4	chr3	87360074	87361074	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	2693.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.97741646462545	7.07079273696933	7.12093146214306	7.81675616822661	7.94044820590611	6.90595551001518	0.861453629997869	0.00699864037943223	0.078122086021948
Merged-chr19-29419623-4	chr19	29419117	29420117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	8698.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	8.06690627734898	8.11115384762141	7.53603461391922	8.20339320080037	8.51681006597133	7.76213275505083	0.378805527599649	0.19641198697948	0.58423678218776
Merged-chr8-124922207-4	chr8	124921737	124922737	+	920.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	24351.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	5.12858329652589	5.39148222615044	5.00464999567156	4.92492649546672	4.70427804911868	4.99800982529567	-0.690560778169164	0.0756616429504051	0.362193877955201
Merged-chr15-44618204-1	chr15	44617704	44618704	+	574.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1023.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	5.2686651538223	5.43376576907442	5.45602330507641	5.69166056467826	5.6946463062142	5.42863874480286	0.449200816030098	0.178371668886124	0.559461337580634
Merged-chr2-79056285-4	chr2	79055784	79056784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186606.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	3.99070864715218	3.67152323955484	3.45418715069917	4.09456323758676	3.63471105345585	3.70661972996081	0.313473747357607	0.603322005194849	0.882544198306255
Merged-chr6-29828992-4	chr6	29828515	29829515	+	759.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-24726.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.05475524203145	3.89414093993191	3.71027601079072	3.71275234321854	4.05580804798266	3.72649630454761	-0.148567913692762	0.787457268433588	0.94877064431094
Merged-chr2-102941088-2	chr2	102940545	102941545	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39380.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.04668084713628	4.77875342847441	4.89623653354439	4.63325859393948	4.73017786125013	4.96092319490323	-0.312120559663959	0.436072192716658	0.799451274848915
Merged-chr12-32132075-4	chr12	32131586	32132586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70807.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	4.03170371014824	3.95783624689499	4.51044673498206	4.34644621060958	4.19290210705824	4.00657798223503	0.0379719068501055	0.941187576328523	0.986908937621943
Merged-chr4-101355166-4	chr4	101354687	101355687	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	1061.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	7.62323019369483	7.93017450634321	7.31106296636927	7.49354728419022	7.83006007124068	7.41443617316491	-0.080469193927195	0.770309326496122	0.943392092118189
Merged-chr9-44396897-4	chr9	44396400	44397400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-27.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	8.13951274291075	7.99942220059405	7.58949695197341	7.64702757184624	7.95244885383121	7.60642062137124	-0.266694960560264	0.304592666439334	0.700973852740454
Merged-chr19-55659597-2	chr19	55659097	55660097	+	836.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	42607.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.85639511628529	7.67135266874443	7.53377397666597	7.370920618179	7.62759748417945	7.33270246952175	-0.350241324036142	0.148703094225003	0.514503183678075
Merged-chr12-112866675-4	chr12	112866171	112867171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5755.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	4.92232535760202	4.21150770898732	4.64308530149004	4.66699747882802	4.59421922279211	4.62908148044096	0.00350451255643243	0.993988539562236	0.998875565240772
Merged-chr14-51255022-3	chr14	51254501	51255501	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053113)	TTS (NM_053113)	1111.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.46299705406348	4.36509332783514	3.82225351145108	3.9998498435398	3.73013269934269	3.72091968828887	-1.26679718639428	0.0226546771052825	0.175377378103315
Merged-chr1-171114074-4	chr1	171113587	171114587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7574.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	7.13333649676604	7.07507651131224	6.91093414002953	7.15988469506701	7.23226811409894	7.33331005800334	0.288100064619997	0.230146015308414	0.625980309943204
Merged-chr2-132225368-2	chr2	132224868	132225868	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	22420.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	5.14234294701211	4.92917053989732	5.28156154666808	5.30722192519523	5.14235721671353	5.21972899608724	0.219159273331277	0.54825920766269	0.859612671354863
Merged-chr6-91738057-2	chr6	91737557	91738557	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	53990.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.53871613774655	2.62155304527163	2.6891277537606	2.56541052474447	2.56784909928513	2.5103791279605	-0.380239859451665	0.620886452604586	1
Merged-chr7-110786850-3	chr7	110786347	110787347	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 2 of 14)	intron (NM_009667, intron 2 of 14)	14243.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	4.11097774187252	3.63340491579527	3.65057290690955	3.17667384272283	3.15056574277251	3.25831740485707	-2.49550525711123	0.00016101410336659	0.00420516682766078
Merged-chr2-51089518-4	chr2	51089070	51090070	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59541.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	7.14660932789552	7.4087893582072	6.57587069900519	6.82563508974102	7.09036661399592	6.96073435701471	-0.206036114218625	0.500052286614994	0.834921806675451
Merged-chr3-127780926-2	chr3	127780426	127781426	+	635.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	-399.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	6.71380482873935	6.73119321679198	6.69297132538708	6.45215602609754	6.73388482439987	6.56893945604386	-0.185084755147537	0.478785456148221	0.823891137932924
Merged-chr15-7925350-1	chr15	7924850	7925850	+	540.0	f1_balb.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	109800.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.17691316193425	3.28994437098817	3.37595849071227	3.25166937210492	3.30659190352871	3.28044459019595	0.00506516363492094	0.993408400597644	0.998651348330892
Merged-chr15-33359243-2	chr15	33358743	33359743	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 4 of 7)	Lx6|LINE|L1	46696.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	3.20509367039041	3.12175614201954	3.41416154470824	3.00715652525861	3.1570276749297	3.2714324486782	-0.419866509202226	0.518456630691093	0.845264010943913
Merged-chr16-91010106-3	chr16	91009575	91010575	+	793.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164483, exon 2 of 32)	exon (NM_001164483, exon 2 of 32)	1020.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	6.24577254807679	6.32439566517822	6.3933176132788	6.60730582211721	6.58656548795538	6.57726989897028	0.44191718317908	0.0921898360101749	0.404478348259142
Merged-chr1-59904191-3	chr1	59903688	59904688	+	986.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8818.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.73814823161578	3.59684515328365	3.60723508758889	3.4712994699811	3.32580400243373	3.72829289231743	-0.505342826575889	0.386349505395177	0.7670957276677
Merged-chr4-62275037-4	chr4	62274524	62275524	+	861.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11405.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.55650847547762	4.69375355005009	4.97679798417209	5.45237775250936	5.25249504826873	4.93210496167074	1.06595343494634	0.00858979252818091	0.0906224745384655
Merged-chr12-8974004-4	chr12	8973581	8974581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159527)	promoter-TSS (NM_001159527)	80.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	4.01160245223792	3.95783137241744	4.25350684080127	4.00483164786914	3.96285177902466	3.95444131406291	-0.287939925360651	0.561320337700626	0.865407801976397
Merged-chr3-27183871-5	chr3	27183335	27184335	+	996.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	831.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	7.66671336808913	7.75251082662033	7.38619920402031	7.55196756839025	7.81002057804589	7.1619595667094	-0.101383410394154	0.711502901580032	0.924661173262022
Merged-chr8-70622842-2	chr8	70622355	70623355	+	560.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	6011.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	3.66538335773837	3.85955229273719	4.13312432113776	4.05597998174663	3.60898274000048	4.11315273178187	0.138318610345143	0.806249400427205	0.954125791654011
Merged-chr7-67480379-2	chr7	67479879	67480879	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-107521.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.104394630771	2.03991226104019	2.27217198169687	2.00808623494825	2.17437034034656	2.01657517605051	-0.494684583410543	0.595244280760901	1
Merged-chr5-102051892-2	chr5	102051392	102052392	+	688.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	18029.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.17252455642045	6.20998071070037	6.40465314854489	6.39090519864735	6.48783014726694	6.18719738320989	0.186183849844042	0.510750179973783	0.841054838220039
Merged-chr7-143119411-4	chr7	143118862	143119862	+	901.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	12108.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	3.553081681942	3.86915488603824	3.93697979825519	3.84093742078334	3.73320205959128	4.38355527568215	0.654874486454907	0.256146904284136	0.653166363631956
Merged-chr14-30627110-1	chr14	30626610	30627610	+	553.0	f0_balb.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-902.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	7.01602996174143	6.64173249961683	6.93988661964083	7.10078923168718	7.06781804047789	7.16510521850673	0.360941095543995	0.158441516923563	0.530220171976885
Merged-chr11-114907792-4	chr11	114907287	114908287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17746.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	8.02868672691247	7.53600012085451	7.41530245720277	7.6416548072533	7.72815804480176	7.49390608918796	-0.0978258364395456	0.714433232363591	0.925889500292054
Merged-chr9-99436924-1	chr9	99436424	99437424	+	549.0	f1_c57bl6.idr	promoter-TSS (NM_008624)	promoter-TSS (NM_008624)	-212.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	3.51823503271964	3.46844583199074	3.00999237703049	3.24628193302035	3.06454155254381	3.33225830687535	-0.568292822790612	0.406151782580562	0.780572802875355
Merged-chr5-101881044-2	chr5	101880544	101881544	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 44 of 66)	intron (NM_172882, intron 44 of 66)	115914.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.7027307727308	2.63007371426493	2.81460360980392	2.48913855675574	2.83641994494319	2.51319718164317	-0.465736486734575	0.566883429693353	1
Merged-chr12-73587557-3	chr12	73587057	73588057	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	2761.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.02723095632064	3.75670593378156	3.75932229525986	3.8054659347305	3.45997521107685	3.8801334990359	-0.446513396587234	0.428520062374844	0.795368392855003
Merged-chr8-125311571-2	chr8	125311071	125312071	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181262.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.18021443969452	2.27937011688695	2.0556519705596	2.31857675242866	2.17694915281159	2.40144593158986	0.831447502475161	0.359978925710781	1
Merged-chr1-132371699-2	chr1	132371199	132372199	+	806.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3751.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.95272480854098	5.89015263018745	6.04968534617841	5.61611075075427	5.83307162817158	5.78275749217826	-0.375553709432149	0.2182940836023	0.612458824761069
Merged-chr10-8858401-4	chr10	8857900	8858900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27670.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.35657377884826	7.54409841850976	6.90532741829523	7.32204697119332	7.47211120936052	6.8859056429368	-0.0676369464150394	0.820794054631432	0.957850154242128
Merged-chr1-60027345-2	chr1	60026845	60027845	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357296, intron 2 of 10)	intron (NM_001357296, intron 2 of 10)	15777.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	3.45895359143224	3.54135525332705	3.91060247150708	3.01850715663983	3.24281724650106	3.39627641399395	-1.62859565271588	0.0142554642908573	0.128317684196631
Merged-chr11-21092900-3	chr11	21092396	21093396	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	1572.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.99810668046027	6.14549774656622	5.89097521298481	6.4414950850882	6.51178083456729	5.97880503173782	0.540872337886435	0.0821634518478916	0.379123019025808
Merged-chr8-70614625-4	chr8	70614117	70615117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2227.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	7.04062350558663	7.12298811484163	7.42619816687493	7.40827686226009	7.57078917639649	7.43207605143022	0.410461224098181	0.0945863606447749	0.409977699459834
Merged-chr1-171817163-4	chr1	171816665	171817665	+	969.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22532.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.55736446064396	5.30137260829442	5.70701641424738	5.28644046797775	5.13828319436394	4.72127535820438	-0.885601740092502	0.0251972900041326	0.187906015521742
Merged-chr1-91054296-4	chr1	91053804	91054804	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	860.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.60036587910876	6.54780068387273	6.72463009037394	6.92788199645101	7.0348071500255	7.024882483099	0.586050936484017	0.0182368219123522	0.15218628800351
Merged-chr8-128358743-12	chr8	128358287	128359287	+	853.272217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008737)	promoter-TSS (NM_008737)	-286.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	5.42570040558189	5.24437215318429	5.82222164200677	5.60779543079395	5.73204670292304	5.5224416630874	0.232910417538815	0.510748422698545	0.841054838220039
Merged-chr17-24668853-2	chr17	24668346	24669346	+	744.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-841.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	6.18668532598565	6.39636226570548	6.29580928673525	5.77729130586348	5.83146942057122	6.09220676256442	-0.683308979908724	0.0208546809229392	0.165996131543049
Merged-chr18-69571210-4	chr18	69570736	69571736	+	900.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	225076.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.05893861117361	5.28850299001753	4.83658737009416	4.61576865452676	4.76927150735069	4.61270940045817	-0.912336595868038	0.0251343468309173	0.18766858678275
Merged-chr1-170856119-2	chr1	170855619	170856619	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	11652.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	3.63907056183454	3.6451949017164	3.76067788718064	3.64003365405392	3.58394079522418	3.62418370815484	-0.221598843032812	0.683824713330476	0.915507180042192
Merged-chr10-121392861-1	chr10	121392361	121393361	+	549.0	f1_c57bl6.idr	intron (NM_029364, intron 13 of 13)	intron (NM_029364, intron 13 of 13)	27771.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.54185722991943	2.3953096525358	2.85683583311119	2.65647985884744	2.55316477280425	2.81374177651004	0.374498595568514	0.64234294592235	0.899398873915991
Merged-chr11-8612230-3	chr11	8611777	8612777	+	645.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	MLT1A0|LTR|ERVL-MaLR	52258.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.42910771973454	3.41406026352304	3.43218027938443	3.26197494859051	3.11691603881363	3.44903890560203	-0.601058715042586	0.329071634516947	0.72115269198792
Merged-chr7-55888795-2	chr7	55888295	55889295	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 11 of 30)	intron (NM_011370, intron 11 of 30)	46724.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	2.43166822294543	2.36290204708291	2.5351175380735	2.58161908915711	2.51051844957159	2.84958525656677	1.23038113366079	0.127247823253392	1
Merged-chr6-57823229-4	chr6	57822738	57823738	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1887.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.73549820818478	5.36532497896304	6.14952689583579	5.9705683949448	5.6369454863836	6.00520854688771	0.172422066781837	0.639743970131749	0.898199312621371
Merged-chr6-57770635-4	chr6	57770124	57771124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	54501.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.76220077680554	5.56557553428221	5.96127393411519	5.49145047970647	5.6743197133698	5.54790222080937	-0.339891697614398	0.302927317795235	0.699641276240207
Merged-chr3-8927091-2	chr3	8926591	8927591	+	716.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-3234.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	3.17604730090799	3.06227356951741	3.32331166037239	2.96180203053475	2.76800587480816	3.17768195879103	-0.982863297296168	0.16255886384389	0.536009429075585
Merged-chr11-71159967-3	chr11	71159466	71160466	+	935.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040696, intron 12 of 14)	intron (NM_001040696, intron 12 of 14)	-15262.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	4.31801908522169	4.22763075110354	4.33400103643078	3.68948540235131	3.91929941140991	3.99385669540214	-1.23277857572764	0.0141437337947949	0.127692166743531
Merged-chr4-155490032-2	chr4	155489532	155490532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1329.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	6.08858506656233	6.27242017604136	6.6228584095932	6.24040025936712	6.50025826614147	6.65055147812322	0.220037988100973	0.472888745782071	0.820550293768681
Merged-chr15-89407505-2	chr15	89407005	89408005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	ORR1C2-int|LTR|ERVL-MaLR	2758.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	3.66740306105335	3.69654922451076	3.84217617470701	3.63133032597461	3.3978311438939	3.91038534415625	-0.273380447497195	0.634808869780175	0.896354115104213
Merged-chr19-34284584-2	chr19	34284088	34285088	+	687.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6071.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	3.14381080795969	3.06162547110395	3.23031224178048	4.33682081610004	4.18845761311913	3.50973485721489	3.6540692576997	6.05825391724523e-07	3.48372627467962e-05
Merged-chr5-114688919-2	chr5	114688419	114689419	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	2016.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	4.55659981224176	4.69861839290867	4.49999685065916	4.9194263444376	4.86921541336145	4.77682484947246	0.614879239214598	0.127246752045042	0.476848664392174
Merged-chr15-58791510-6	chr15	58791029	58792029	+	842.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 3 of 6)	intron (NM_175212, intron 3 of 6)	31898.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.25635324652189	5.50827911187814	5.04772654765323	5.27661700925477	5.19092490224175	5.07681167730469	-0.219979231345071	0.552042762763227	0.861546661145201
Merged-chr4-128724362-4	chr4	128723879	128724879	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3192.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.86766394649283	5.8132334041007	6.02435875428961	5.80858860422953	5.78347267543763	6.04148396704985	-0.042536498623412	0.889350270493438	0.974240173857916
Merged-chr4-97924059-4	chr4	97923556	97924556	+	986.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	146430.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.10801617056477	4.11983303334102	3.99594985370716	3.90016079725057	3.94782646041775	3.75079538549355	-0.612444361642056	0.225758781343876	0.620701256044383
Merged-chr8-70538856-4	chr8	70538351	70539351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-824.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	8.77973742249248	8.81359723975415	8.3926847177487	8.69199543719815	8.99540315835375	8.2692108862393	0.0196096105602223	0.94180945659438	0.987058762320129
Merged-chr5-28321911-4	chr5	28321420	28322420	+	875.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028234, intron 1 of 18)	intron (NM_028234, intron 1 of 18)	4731.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	3.41489960686929	3.51479774018392	3.08974607250166	3.39774975371133	3.39081857562067	3.40782048665745	0.145472292218808	0.819133316056743	0.957209935971094
Merged-chr9-116083734-4	chr9	116083231	116084231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91632.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.1276949413899	7.64128178808273	7.52737084940594	7.16789210284104	7.5054600080056	7.11512955607094	-0.247289474058906	0.367801909435385	0.752848915901197
Merged-chr13-54593829-1	chr13	54593329	54594329	+	565.0	f0_balb.idr	3' UTR (NM_001347512, exon 6 of 6)	3' UTR (NM_001347512, exon 6 of 6)	3598.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	3.29877177360125	3.2671901449706	3.26909968481112	3.12199114428886	3.19654932854101	3.55174123024621	0.0682803414423269	0.914488189581966	0.980912729144991
Merged-chr9-106203142-4	chr9	106202634	106203634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	26.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	5.9432979810651	5.80791137580709	6.22337843837255	5.68970205570142	5.76047276893377	5.69977785293682	-0.485453834741246	0.124483698847797	0.472098928006171
Merged-chr8-35585577-2	chr8	35585093	35586093	+	555.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_040376, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	-2205.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	3.28645823713437	2.97580748580303	3.04684879260888	3.31228325115857	3.08171250759403	3.23946661143131	0.420446713811406	0.526857732623951	0.849687525994762
Merged-chr18-82861719-3	chr18	82861235	82862235	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	5838.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.36343769106254	4.29657031492092	4.47204826405256	4.24657020486294	4.24505600706977	4.45677424543035	-0.16366784581508	0.715093522877179	0.926294336925095
Merged-chr3-95459307-3	chr3	95458806	95459806	+	951.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	24916.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	5.21294761252678	5.07529447173708	5.64447036432547	5.01948048126586	5.21487159489413	5.36126920693145	-0.239343216321726	0.535346945756364	0.853511885485043
Merged-chr11-59542579-4	chr11	59542063	59543063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145827)	promoter-TSS (NM_145827)	-123.0	NM_145827	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	8.54687877149666	8.7669016717817	8.2276197930533	8.29201459362804	8.7072629304559	8.21584132169306	-0.149481744600782	0.564852841885657	0.866552670637515
Merged-chr7-88203034-3	chr7	88202537	88203537	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75048.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.84049430623512	3.55495508668883	3.97541187527118	3.90363107482692	3.74816075497521	4.21763571526387	0.517836950106207	0.351190233029596	0.739086949987195
Merged-chr11-114926841-4	chr11	114926241	114927241	+	866.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7645.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	7.04644638585079	6.45855815771988	6.90917450337569	6.76596274094601	6.83641376142948	6.9808240768322	0.0524550517650411	0.854893089908265	0.966038421653227
Merged-chr9-83925073-4	chr9	83924518	83925518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305935)	promoter-TSS (NM_001305935)	-119.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	3.9483759717292	3.78544304770511	3.76408626489757	3.92494101274445	3.94456906016118	3.78130416347399	0.163341840331371	0.752765162280843	0.938396410724882
Merged-chr17-63857356-3	chr17	63856891	63857891	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	-6590.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	2.78968544950433	2.68056306131489	3.03936730615818	2.73358966418049	2.50915387098413	2.63551750498503	-1.15365606025204	0.137788271507899	0.496173735042596
Merged-chr3-84314740-4	chr3	84314238	84315238	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9963.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	3.14705129452893	2.95245042520785	2.95475061336258	2.98353714385732	3.0222046727475	3.20300576019611	0.201447903712945	0.764752870742666	0.942046176310479
Merged-chr15-28420917-4	chr15	28420399	28421399	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 66 of 78)	intron (NM_133365, intron 66 of 78)	217133.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	3.05407935942442	3.24425966838841	3.24394609065756	3.23021000081652	3.26552279163587	3.47686933214231	0.578777038249251	0.359137253993654	0.745373904894685
Merged-chr17-32268865-4	chr17	32268367	32269367	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	15256.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	6.15822058907006	6.16477546875037	6.12566784671749	5.93667982759266	6.08122112203219	6.20676253455573	-0.129776870245225	0.650472276884942	0.902613484298836
Merged-chr1-156472352-2	chr1	156471852	156472852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	G-rich|Low_complexity|Low_complexity	1976.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.63571333576173	7.70328882715708	7.39223299674733	7.8824522168228	7.97719669516109	7.6263807607959	0.364658435202935	0.128173773288763	0.478813115193111
Merged-chr10-80657355-2	chr10	80656855	80657855	+	812.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145361)	promoter-TSS (NM_145361)	-284.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	2.38493841104848	2.35407370682485	2.60704016487291	2.4349088169605	2.5643569065999	2.5570477968735	0.439045059813024	0.585356759152665	1
Merged-chr11-20112446-4	chr11	20111958	20112958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	CpG	493.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	7.30942607403064	7.45392821115848	7.34628501564292	7.47473841006902	7.24747335402035	7.60300341095135	0.103239696285433	0.667436496904395	0.908729013673458
Merged-chr17-87972210-4	chr17	87971698	87972698	+	995.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2852.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	5.67682265884165	5.66809208520687	5.93621428960464	5.31898197088193	5.26648744042179	5.55783624898608	-0.721732853904817	0.0312989769058998	0.214204371467074
Merged-chr3-21988304-4	chr3	21987717	21988717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88435.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.12851589194018	5.41398121644779	4.78346570571858	5.21793501994468	5.04576891745404	5.08457304668195	-0.0655670264370442	0.869081016879611	0.969772902205443
Merged-chr10-59220923-3	chr10	59220379	59221379	+	802.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024910, intron 1 of 9)	intron (NM_001024910, intron 1 of 9)	968.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	6.6868106968972	6.8718119486839	6.58269496451	6.79287374056147	6.9794830387971	6.28726112661017	0.0144840485053163	0.961848175966437	0.990684873115088
Merged-chr2-90631025-4	chr2	90630530	90631530	+	871.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46185.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	3.36108199659144	3.12276944315049	3.22477002860461	3.02845815355192	3.15291937080268	3.06023147256836	-0.669361829468789	0.306044073174029	0.7020655990236
Merged-chr11-79286533-4	chr11	79286022	79287022	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31827.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.49413255544371	6.23548170137739	6.56595872047647	6.58034227848198	6.81129069670347	6.75248573147175	0.45948604599026	0.0924254616871631	0.404971565240536
Merged-chr4-155197863-4	chr4	155197363	155198363	+	835.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	24672.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.505047661748	4.39354629357828	4.27659508559972	4.2736587521701	3.84260788908455	4.15782598460094	-0.830348416310697	0.0891966268821886	0.396745242099106
Merged-chr16-43841512-3	chr16	43841014	43842014	+	859.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48162.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	2.79102420955184	2.97968096690973	2.98582202698574	2.69023615087932	2.60508022902916	3.11326331955724	-0.51264030542402	0.503427145005929	0.837031254874512
Merged-chr3-132684899-2	chr3	132684399	132685399	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 1 of 25)	intron (NM_001163455, intron 1 of 25)	755.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	5.50140361257215	5.63364178593225	5.59456900402786	5.61115942791324	5.55656985775862	5.07027555790483	-0.243368738341235	0.495170464161097	0.832349729943165
Merged-chr9-58275318-4	chr9	58274819	58275819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22155.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	8.25504895786492	8.3109418000405	7.96817849990877	8.38411276980819	8.64755464114733	8.18562213232394	0.327623538834089	0.172912462619938	0.551654468374672
Merged-chr3-22077443-4	chr3	22076936	22077936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	784.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.84272373658842	7.7370384269273	7.52431923416986	8.07344453415486	7.71698906117894	7.58114506095449	0.141393139568788	0.574978125369799	0.87094931637326
Merged-chr19-5390525-2	chr19	5390025	5391025	+	756.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033224)	TTS (NR_033224)	-1822.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	3.37467506250046	3.44285080398974	3.61615291082252	3.15101760882921	3.16660671391919	3.58637541407469	-0.655420910255804	0.302556458791711	0.699228182013852
Merged-chr7-101389682-2	chr7	101389182	101390182	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 11 of 33)	PB1D9|SINE|Alu	4156.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.86826476469756	2.58884143351369	2.75000182585638	2.7962293651241	2.48445133419042	2.42572491445441	-0.883901931301143	0.287023943404069	1
Merged-chr9-104281148-4	chr9	104280644	104281644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18214.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.67573250389088	5.63136020992691	5.14693986434216	5.21724124371545	5.62458013234835	5.13931441794435	-0.301736302058746	0.437514741027594	0.799986011373495
Merged-chr4-32011792-2	chr4	32011309	32012309	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009316, intron 14 of 16)	Lx8|LINE|L1	47702.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.22304641994453	4.18074372717313	4.46651955484363	4.02482967882173	4.0014150621348	4.41373390753834	-0.385329861927666	0.431476682439775	0.796911573849146
Merged-chr16-44130671-4	chr16	44130175	44131175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	8584.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	5.65493920441727	5.68920574875794	5.56019103357294	5.84462018112662	5.91135957943479	5.88728784151975	0.435876219918941	0.153215329550556	0.522050878005875
Merged-chr10-34207805-4	chr10	34207296	34208296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-245.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	7.34148714830202	7.00706895265473	7.59172287270025	7.27320374034838	7.26100397038579	7.63089031483437	0.0967673041259226	0.726058773216707	0.929743505822386
Merged-chr5-99374649-4	chr5	99374138	99375138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-121711.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.58618738665367	6.81863577083091	6.79783231376973	7.02319173139868	7.17803970542994	7.11590225209191	0.572658431272353	0.0217643456217059	0.170830831580702
Merged-chr12-51704141-4	chr12	51703655	51704655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12241.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	5.38109166252412	5.23062499638411	4.96526354229099	5.30981142284251	5.18508690804703	5.2108843074679	0.0408239079281426	0.910941411302583	0.979996676367672
Merged-chr18-34221801-2	chr18	34221302	34222302	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-30.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	7.23064526237322	7.70952257148437	7.09299573935264	7.64406744775738	7.84720490617589	7.62473542810014	0.479357456587387	0.0777553887417279	0.368066354899403
Merged-chr13-113270548-2	chr13	113270048	113271048	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60889.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	3.4593834238559	3.20310606125172	3.54574318759945	3.68614233892442	3.47488009590872	3.21180003210787	0.254924766539289	0.688258495748251	0.917193226920892
Merged-chr5-31047143-3	chr5	31046645	31047645	+	711.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360022, intron 2 of 17)	intron (NM_001360022, intron 2 of 17)	934.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	3.99416670614241	4.26444922177299	3.99272055583068	4.0113681824549	3.83130507616438	4.10976707741938	-0.337963215207002	0.503203153215184	0.836874959480513
Merged-chr11-80154031-4	chr11	80153541	80154541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172133)	promoter-TSS (NM_172133)	-121.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	7.0270666553947	7.23871731029755	7.14902295812115	7.07161670080337	6.96733228439849	6.77394403475562	-0.291655336995553	0.243078266493743	0.640367862483409
Merged-chr9-124126596-4	chr9	124126112	124127112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	5069.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	7.67593167050742	8.01207252439019	7.53206214178172	7.69091891500241	8.1382266441563	7.75091323569877	0.171338861136588	0.516808657920091	0.84431573428183
Merged-chr6-125436861-4	chr6	125436342	125437342	+	670.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-56338.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	2.95931727767629	2.84724040374112	2.99643368360341	3.65795412339712	3.36004683568665	3.26000629724651	2.27439946756394	0.0010987317102885	0.0193734410149789
Merged-chr7-16294980-4	chr7	16294482	16295482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8187.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	7.5019076406017	7.54350645296399	7.04894304623453	7.46724711373817	7.60672811061043	7.23870898951264	0.0880035717426807	0.740481405295054	0.934536277442603
Merged-chr17-27754263-3	chr17	27753759	27754759	+	807.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271511, intron 3 of 3)	intron (NM_001271511, intron 3 of 3)	-23256.0	NM_001357728	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	3.11376037878625	3.08577719629523	3.416808198884	3.00403923257524	2.76337527472624	3.05210233120584	-1.23461618515298	0.0802507827602768	0.374819047095901
Merged-chr6-127582557-2	chr6	127582057	127583057	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4582.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.65923228702694	3.7906881487033	3.77226588307402	3.97881764994717	3.80097417945663	3.79045818301844	0.383501426308589	0.465188936465707	0.816844646665488
Merged-chr13-9191382-4	chr13	9190872	9191872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85153.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.85349144757427	3.70741254736355	4.16378233581015	3.88200309120482	3.74051465173055	4.01026096194813	-0.113708968435005	0.832182565182345	0.960611438244586
Merged-chr3-57695907-1	chr3	57695407	57696407	+	575.0	f0_balb.idr	Intergenic	MT2B|LTR|ERVL	-3370.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	3.25993374141472	3.33132813456626	3.16877255435243	2.87766101485391	2.9568914452351	2.93708763078545	-1.54034746873529	0.024629326937231	0.185278495409845
Merged-chr18-36287612-4	chr18	36287102	36288102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008989, exon 2 of 2)	exon (NM_008989, exon 2 of 2)	6440.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	7.50420799937941	7.36682573526665	7.26549875068076	7.3502684037912	7.08649538005718	7.43228614713172	-0.142471544046991	0.56221077273671	0.865615046867793
Merged-chr19-46045207-4	chr19	46044679	46045679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113408, exon 1 of 11)	5' UTR (NM_001113408, exon 1 of 11)	132.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	7.57685469372145	7.58368473452202	7.51337891793113	7.44070926134456	7.44926500394267	7.63658780632521	-0.0777546456465375	0.728684726968082	0.930478966998914
Merged-chr13-35079792-4	chr13	35079277	35080277	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85633.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	4.89503167380278	4.89974667477753	5.20945708652326	5.25903474413112	4.96208340744248	5.67521459043246	0.654459694695415	0.109947795307743	0.443259712798868
Merged-chr18-74780066-4	chr18	74779534	74780534	+	963.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177470, intron 1 of 9)	intron (NM_177470, intron 1 of 9)	822.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	5.75345059655334	6.43537811190657	6.37522146101383	5.94876326215912	5.61541546594496	5.84999744003566	-0.716548160312534	0.03960927686845	0.247377370687532
Merged-chr11-86292408-2	chr11	86291908	86292908	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130959, intron 6 of 6)	intron (NR_130959, intron 6 of 6)	-34840.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	3.45953445620807	3.64320181220928	3.51838355354311	3.83391929484235	3.92431493971317	3.70197938845705	0.960824203274734	0.0827313437921755	0.380494674677169
Merged-chr4-53149071-4	chr4	53148567	53149567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	10828.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.34536813019985	7.20683283867495	7.10944690633939	7.23041916288214	7.35850846481412	6.94646762007417	-0.0419171475868685	0.868813900991387	0.969741115273568
Merged-chr9-102792013-3	chr9	102791487	102792487	+	969.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42933.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	3.21528673457646	3.62873981341627	3.3447310622519	3.32632842891801	3.24070313414441	3.52527665304882	-0.187404901283853	0.766290345984091	0.942437273046488
Merged-chr4-9117218-2	chr4	9116718	9117718	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-152075.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.48281449835823	3.29050848706392	3.16978420581659	3.52343581547223	3.3414538641688	3.53206731320911	0.526460689221984	0.394132828056604	0.77206906441863
Merged-chr12-69401207-4	chr12	69400703	69401703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29053.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	6.41372059578209	6.06550259528269	6.16047472073324	5.64311687416171	5.81887900404403	5.40836440563206	-1.00624542584089	0.00217444906037715	0.0329086135714553
Merged-chr7-100159249-2	chr7	100158756	100159756	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026010)	promoter-TSS (NM_026010)	-21.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	7.04412096623269	7.24492117827545	7.00598083665105	6.92842652297141	7.05635334647525	7.06394272990577	-0.13689438696689	0.575695639201136	0.871366150301017
Merged-chr10-81627696-4	chr10	81627174	81628174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-66.0	NM_181586	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	6.96055719879431	7.34282293306429	7.44642221236399	7.37360403918098	7.64984653861352	7.05809391970924	0.192812854228912	0.497681377762983	0.833770467452658
Merged-chr19-32681099-4	chr19	32680599	32681599	+	889.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 8 of 9)	intron (NM_026487, intron 8 of 9)	31199.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	5.40866933212603	5.72664525989703	4.98826092244431	5.72109607503338	6.11460633972746	5.36043278177161	0.661878991282458	0.111765525178839	0.446482587694119
Merged-chr12-41852206-3	chr12	41851703	41852703	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 6 of 6)	intron (NM_053122, intron 6 of 6)	-366146.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.86406000447475	4.13841947655511	4.08294512793349	4.03991659260257	4.13361458395046	3.90405667567428	0.0100304285448843	0.984050551098772	0.996464361754829
Merged-chr2-167924310-2	chr2	167923810	167924810	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8017.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.30287908609419	6.5860086036605	6.56750596502861	6.57078771542821	7.01756149560883	6.92973508564623	0.578499867097045	0.0408096011050308	0.251970659825335
Merged-chr1-105997484-4	chr1	105996987	105997987	+	989.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	7081.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	5.71059717948306	6.10407948206764	6.10675761546608	5.7620763111472	6.14515563612818	6.03781130680097	0.0213636475732257	0.947374110011434	0.988008807662239
Merged-chr11-85713686-4	chr11	85713199	85714199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6045.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	6.88436433413287	7.10415179394234	6.91719729682369	6.62113192228052	6.54804254286221	6.19649925729801	-0.776488868012378	0.00487485812462953	0.0601989263974673
Merged-chr11-85706768-3	chr11	85706268	85707268	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045875, exon 2 of 6)	non-coding (NR_045875, exon 2 of 6)	12976.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	2.94155892404931	2.8659990816106	3.2509420922928	2.89788634571904	3.3372195125918	3.03821744307085	0.373363962384622	0.603426434652609	0.882563266150609
Merged-chr2-166717343-6	chr2	166716779	166717779	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3447.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.2283485426634	5.76391243261861	5.64176908337153	6.03440957334791	5.93434302680124	5.58576244337087	-0.0705451127552143	0.840694356047021	0.962819298477451
Merged-chr11-4639020-4	chr11	4638535	4639535	+	918.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	1242.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	4.6746543836434	4.54526694380053	4.22026804944254	4.79999128109885	4.82166362301785	4.48703447055631	0.511194952236585	0.256643671765587	0.653691889318936
Merged-chr5-123023350-3	chr5	123022842	123023842	+	942.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	8268.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.63906872523221	4.52668793513991	4.27323443673663	4.42809429571297	4.3494466527747	4.43395713645318	-0.245683785773017	0.579604784000846	0.872572319921262
Merged-chr4-130792830-14	chr4	130792276	130793276	+	912.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 1 of 5)	exon (NM_011520, exon 1 of 5)	239.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.41900522418173	7.43276588934793	7.61891886641479	7.55404490834518	7.53685201780832	7.36477336185043	0.00606198425888843	0.978963826099841	0.995160277495735
Merged-chr17-24694694-2	chr17	24694195	24695195	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023040, intron 2 of 2)	intron (NM_023040, intron 2 of 2)	1461.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	2.58706002063649	2.419553360668	2.74894350107072	2.36564557076246	2.5436144133051	2.45624968961953	-0.768970771935046	0.350850855777282	1
Merged-chr8-35850547-4	chr8	35850044	35851044	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23985.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.37821212954112	2.27530989690548	2.44975706770583	2.65077080501558	2.73305081560175	2.65403420362919	2.02882793478478	0.0157400628777071	1
Merged-chr17-12996502-2	chr17	12996002	12997002	+	644.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	2.7804081252024	2.6144842496356	2.74172402627293	2.40387275988399	2.32074804756483	2.56766103550804	-1.80417865203928	0.0318153031092987	1
Merged-chr3-116614511-3	chr3	116613990	116614990	+	853.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030016)	promoter-TSS (NM_030016)	97.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	6.02789463744793	5.87365261901252	5.72188513613498	5.69159011062071	5.91672853154414	5.91096056351325	-0.0778055939197412	0.802679392085718	0.953313831733603
Merged-chr5-100570224-4	chr5	100569726	100570726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1979.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	6.83120209931252	6.82148598648552	6.67585448950631	7.32118557769656	7.56238453519956	6.95623504354714	0.807510810241894	0.00313828160622649	0.0436016256288018
Merged-chr13-111944978-4	chr13	111944495	111945495	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	77059.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.29567838673835	5.146393890096	4.78066530928634	4.54112048915623	4.7875724125361	4.84759788368834	-0.818107873646036	0.0472891611290417	0.275433047684817
Merged-chr11-118157396-2	chr11	118156896	118157896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28177.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	7.49078445125436	7.5586272376738	7.21213810527779	7.12585225799199	7.19036142536957	7.31642469896751	-0.336959699281163	0.165188436781173	0.53999992378549
Merged-chr18-38575669-2	chr18	38575169	38576169	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	25599.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	4.01387286758321	3.83206016965024	3.74660978929507	3.86081801657628	3.47667302867646	3.65454517137325	-0.664968932545332	0.234103554895162	0.63036877369004
Merged-chr2-33873899-2	chr2	33873399	33874399	+	750.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	MER20|DNA|hAT-Charlie	14047.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.50727964163418	3.6918963377136	3.54601858729375	3.32754308013805	3.29736318305379	3.61613744080604	-0.643825839086746	0.278446830870908	0.675623815920472
Merged-chr11-75472935-4	chr11	75472516	75473516	+	857.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4966.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	2.82251282203664	2.62105507052329	2.6307641559663	2.78111668492914	2.60510445207404	2.94975892477188	0.438885574954621	0.563823307683059	0.865992481769395
Merged-chr1-144247110-4	chr1	144246615	144247615	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1989.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.86607007243852	7.23395585380134	6.54599786744105	6.50967297359577	6.73814181233048	6.55086025444691	-0.493493870686932	0.0978935871526388	0.417248724505521
Merged-chr4-144998416-1	chr4	144997916	144998916	+	852.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	105279.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.09000662720449	3.3996347551284	3.25097882673052	3.1305067282905	2.89877829343559	2.96384944005009	-1.13302585499256	0.0968167436694165	0.414770871736835
Merged-chr15-57923084-4	chr15	57922581	57923581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167679, exon 4 of 18)	exon (NM_001167679, exon 4 of 18)	10882.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.86936327156004	7.78419195388706	7.57278775592981	7.8680838047183	8.10240190722766	7.7594353202791	0.246435318817238	0.296537912019087	0.693171366955017
Merged-chr10-127589010-2	chr10	127588492	127589492	+	725.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 13 of 88)	intron (NM_008512, intron 13 of 88)	32156.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.59209181571831	5.33658471250142	5.91577006449256	5.68463645096982	5.36470010810226	5.7936335033971	-0.0142747877998214	0.968622230551805	0.992811398801848
Merged-chr1-40085449-2	chr1	40084949	40085949	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360800)	promoter-TSS (NM_001360800)	402.0	NR_037980	100047133.0	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	4.70589434713052	4.85182136062974	4.37949077216595	4.80442076442001	4.65877911288146	4.67166834411362	0.0920460123708295	0.829841119200264	0.960134151531511
Merged-chr4-138969300-4	chr4	138968777	138969777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025786)	TTS (NM_025786)	2165.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	6.96009785287647	6.62248691675075	6.82857748772178	6.32507569309066	6.10219820052505	6.04404253539027	-1.04299713348769	0.00023037385458632	0.00561480600246588
Merged-chr12-85395902-3	chr12	85395387	85396387	+	909.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21170.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.03798391515228	6.94854812494237	6.9471286806759	6.79899034961014	6.74913312767956	6.90770877094383	-0.254668540568583	0.297177636592233	0.693830312086969
Merged-chr8-126970610-2	chr8	126970110	126971110	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172762, intron 2 of 10)	ID_B1|SINE|B4	469.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	4.54697817111191	4.38100081969805	4.50779324534418	4.71533571972691	4.47478769854094	4.53271486737595	0.242589346103386	0.570210348465373	0.869072933274727
Merged-chr9-21989851-1	chr9	21989351	21990351	+	640.0	f0_balb.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	-398.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	3.51611504687277	3.31552902488736	3.70685793594859	3.42141870001463	3.42333474679871	3.67784956173272	-0.0306443267406537	0.959026880959543	0.990174309444982
Merged-chr14-30628880-2	chr14	30628380	30629380	+	583.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2672.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.46597317236882	2.46471047488685	2.65627465834864	2.62168564841785	2.35910264056125	2.66879136491101	0.141232924936352	0.860454969553721	1
Merged-chr1-191062957-4	chr1	191062474	191063474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163421)	promoter-TSS (NM_001163421)	-42.0	NM_026895	68972.0	Mm.237188	NM_026895	ENSMUSG00000026632	Tatdn3	1500010M24Rik	TatD DNase domain containing 3	protein-coding	5.74023527482924	5.50772105029487	5.8174422390622	5.73575848402926	5.51206065761117	5.83061870895968	0.00281131345774496	0.993177216797476	0.998651348330892
Merged-chr2-93214402-4	chr2	93213890	93214890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	26842.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	3.19355533162804	3.13630593201918	2.87560163333989	3.2713375405805	3.02116875559363	3.14021464720096	0.283073649279099	0.679982851244853	0.914097821153594
Merged-chr1-131492629-4	chr1	131492116	131493116	+	880.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	34745.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.05151785979934	5.04968866506199	4.68318382861784	4.79141815285055	4.52989305886962	5.14689707100299	-0.249016694737742	0.565563758688383	0.866815789886591
Merged-chr13-4770555-3	chr13	4770061	4771061	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161397.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.62011873718934	4.91141451976778	4.14278182362167	4.08012547406099	3.55575941815347	4.2145216341862	-1.69794760861265	0.00326512245865671	0.044884240796284
Merged-chr12-86800949-4	chr12	86800446	86801446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66577.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	6.91671188351262	6.79029676674803	6.68645890673322	6.77879322579128	6.61681837734309	6.48234204550493	-0.266590672649643	0.310425270886855	0.705829393476587
Merged-chr2-60285385-4	chr2	60284859	60285859	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-875.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	6.13886854436308	5.98293501608427	6.31543208566776	6.26866834373233	6.32358633422033	6.59906474235254	0.422398306157552	0.148956750570502	0.515038159213393
Merged-chr9-66592287-4	chr9	66591768	66592768	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144937, intron 1 of 14)	CpG	847.0	NM_001302122	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	7.58997747650951	7.5855529880549	7.17102841064157	7.51186127128392	7.25410451642992	7.12431487197971	-0.237491076811328	0.364791599295493	0.750028369485675
Merged-chr16-35872579-4	chr16	35872070	35873070	+	908.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.50581384568567	5.69125063076024	5.79279514880819	5.77380424629625	5.81617225682462	5.85411897196533	0.276674944710289	0.375992015300383	0.758951282467405
Merged-chr8-104249871-4	chr8	104249397	104250397	+	784.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	-964.0	NM_001037841	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	5.11366146097459	4.66776814315244	5.3089913423909	5.35273011578502	5.14749814027534	5.08449783786051	0.320660053439187	0.427835158421714	0.794733845201454
Merged-chr5-90895216-1	chr5	90894716	90895716	+	577.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	3971.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.80223510385971	3.73037014339849	3.8299675843664	3.50475234571971	3.78189411201644	3.79985982447706	-0.274120634584818	0.61454211841075	0.887509542539593
Merged-chr17-53567579-4	chr17	53567105	53568105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	CpG	634.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	6.82666213555303	6.63756111508481	7.06506050105569	7.10621045127434	6.86294669532189	7.13503480722067	0.290128681881736	0.277871759923668	0.675145063235434
Merged-chr9-32516892-4	chr9	32516443	32517443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	24509.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.68171027346337	6.34070978101056	6.23267385909198	6.3795116532775	6.22156875112988	5.99494093347047	-0.3716585259176	0.221950440473549	0.61679421050441
Merged-chr17-32349142-4	chr17	32348642	32349642	+	789.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 1 of 13)	MER20|DNA|hAT-Charlie	1435.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	3.58760630332393	3.30575299690949	3.72590804673121	3.52131780971796	3.48597625295546	3.59340866084934	-0.0464923982788208	0.937024118632837	0.986037792257163
Merged-chr11-113334658-4	chr11	113334146	113335146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-124977.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	4.78752007154974	4.70452169789143	4.77537655023874	3.6799596587398	3.59779327541378	3.93320474751533	-3.13123784466493	6.03988736670061e-09	5.74362226295342e-07
Merged-chr17-47614047-2	chr17	47613547	47614547	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020048, intron 2 of 3)	intron (NM_020048, intron 2 of 3)	2451.0	NM_020048	56771.0	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	2.78800462865684	2.71331918805616	2.88462780748818	2.70478068288281	2.82233244874168	2.95656603806486	0.17899329551997	0.803304683968201	0.953447441859101
Merged-chr7-38018659-4	chr7	38018152	38019152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	900.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	7.57611494741506	8.04315861418458	7.72552759040989	7.80810594666007	7.61916230609323	7.47313802178885	-0.225505425939916	0.372243358702961	0.756099728816208
Merged-chr6-5103973-4	chr6	5103489	5104489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89957.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	5.94601484492688	5.99886468437346	5.92354156930048	5.80806984913001	5.59344087562302	5.62261205898371	-0.504256411426832	0.0988984220343313	0.419360626745723
Merged-chr5-140640464-2	chr5	140639964	140640964	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	MTC|LTR|ERVL-MaLR	8567.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	4.99548531722129	5.19753462272621	4.99081821621435	4.93704124264389	4.79750588931907	5.08993654314622	-0.287662631199438	0.449819935781506	0.808013574003465
Merged-chr4-8914279-2	chr4	8913796	8914796	+	596.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162972.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.37551491876939	5.63253695720283	5.4868165530989	5.47375901072068	6.00964406142702	6.06680122832748	0.678843409111964	0.0538625488559461	0.297655241097533
Merged-chr18-4910048-1	chr18	4909548	4910548	+	804.0	f0_balb.idr	Intergenic	LTR40b|LTR|ERVL	97562.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	4.3798104157119	4.53073154440074	5.1380130743144	4.34327357576394	4.25222482414773	4.76044403114398	-0.608640166853243	0.223071121742434	0.617927355281457
Merged-chr17-24021870-2	chr17	24021368	24022368	+	653.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16375.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	2.13467774370022	2.0711973761484	2.23792023409635	2.49435842755471	2.24131510253109	2.50888732889265	1.94806353687936	0.0332140067773217	1
Merged-chr17-71253619-2	chr17	71253150	71254150	+	752.8690190000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 7 of 7)	intron (NM_001357337, intron 7 of 7)	48996.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.07414229499729	2.93657044246881	2.96891505089968	2.6228074091543	2.44350686907613	2.601167773264	-2.71414472509566	0.00145240407884833	0.024151006913032
Merged-chr15-73622068-4	chr15	73621568	73622568	+	969.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	2676.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.12426863460741	6.27258679492373	6.65537389557714	6.2297521823467	6.5308889914023	6.81503868246835	0.293726610638779	0.356150400190847	0.743074709738473
Merged-chr17-6008801-4	chr17	6008298	6009298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 7 of 24)	intron (NM_001357667, intron 7 of 24)	1218.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	5.17050469334306	5.08088988856386	4.51929411441941	4.79934069062754	4.50078387998351	4.44636748492522	-0.845378565927712	0.0613238204144868	0.321069932035483
Merged-chr5-21332340-4	chr5	21331849	21332849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-40324.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	5.40291179867427	5.33678350018451	4.98078743447162	5.39695677410551	5.51536981073452	5.2308889984663	0.25436122613829	0.486224655597768	0.827729881398155
Merged-chr7-4659088-4	chr7	4658573	4659573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172894)	promoter-TSS (NM_172894)	-123.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	7.81579637710034	7.93811012817588	7.80252202624914	7.90301938293303	7.94784391616955	7.96213039919902	0.116510145092137	0.581947877130803	0.873484978987509
Merged-chr10-20590295-4	chr10	20589801	20590801	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-41973.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.66947119795366	4.31426783467409	4.47326818165137	4.21935624816715	4.50917487600144	4.272896228401	-0.372056763659714	0.420594021368395	0.789800880993226
Merged-chr10-68737518-4	chr10	68737020	68738020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13774.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	6.09017275756723	6.11469576839552	5.82056590143155	6.36100134944235	6.31236649775355	6.03453807479109	0.383023793052006	0.201445957077097	0.590984054786189
Merged-chr7-118487896-2	chr7	118487396	118488396	+	675.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4079.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.69822421960491	6.10476396483846	6.02675342904311	6.44281355037156	6.39943232339379	6.154956277703	0.661042421030406	0.0303263289718573	0.210405501633478
Merged-chr12-112617395-4	chr12	112616911	112617911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2636.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.4114828069139	7.4202726552861	7.39873766463328	7.33289850132456	7.49274063002962	6.99912217218951	-0.158367559693342	0.528504967849896	0.850563640958844
Merged-chr4-46136023-2	chr4	46135523	46136523	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173033, intron 1 of 9)	intron (NM_173033, intron 1 of 9)	2452.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	3.84463056071975	3.25564712541136	3.59455485769619	3.27197460544451	3.19188397833868	3.39470084379669	-1.15715209961905	0.0718979081186736	0.352159238211596
Merged-chr8-70562932-4	chr8	70562432	70563432	+	918.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	23257.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.1308790890713	4.59664114166471	4.34052652194293	4.26974487095771	3.80506223441347	3.8768341870118	-1.94893085395299	0.00035168094521991	0.00794102254812978
Merged-chr3-61605709-4	chr3	61605216	61606216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241209.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.06387182278176	4.20793883348342	4.36961849654757	3.73608899302488	3.53884497876994	3.85403565398459	-1.59883691296454	0.00272154703888737	0.0390832101367671
Merged-chr1-143918559-4	chr1	143918073	143919073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85576.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.947005763175	7.0293803983318	6.79245815587216	7.05542455420395	7.11137965709503	6.73849194308261	0.0857155418191376	0.741901439508284	0.935037866415311
Merged-chr2-32550002-3	chr2	32549479	32550479	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	14620.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	3.68320762145904	3.08505486021585	3.25413449967816	3.24000789251789	3.18365447370482	3.14548541492181	-0.720333106964421	0.286691272241116	0.683936104264423
Merged-chr1-138290940-2	chr1	138290440	138291440	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	17202.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	3.3113519722837	3.03213428793955	3.305571950304	3.00570003291659	3.342546813919	3.14888099172767	-0.173121971867	0.796092351994204	0.95140420098761
Merged-chr3-48080830-4	chr3	48080308	48081308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54049.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	4.1540974923945	4.11804567970979	4.0690951690843	4.42489593920932	4.11495707450738	4.41030564201904	0.549935867916079	0.245589030476566	0.642645689440908
Merged-chr2-118546379-4	chr2	118545870	118546870	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	1229.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.49370482783378	5.2901110136087	5.25618685636467	5.56905044101788	5.8384125394334	5.41898707072664	0.528630813985095	0.128836524455715	0.479909997623381
Merged-chr4-130838115-4	chr4	130837617	130838617	+	779.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45580.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.60669211655569	3.67328880582479	3.89859810512022	3.38920765191948	3.17471389868127	3.41174965977076	-1.5255027048438	0.0119505770165812	0.113943349650016
Merged-chr8-123248125-1	chr8	123247625	123248625	+	596.0	f1_balb.idr	intron (NM_028200, intron 7 of 14)	intron (NM_028200, intron 7 of 14)	-6070.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	3.79388681173501	3.59400190648656	4.10109426558719	3.5413170963111	3.74417486133481	4.0386014314469	-0.171323407272898	0.766774909110777	0.942573703853445
Merged-chr5-64812716-4	chr5	64812221	64813221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	9198.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.3500148626396	7.43624761496642	7.42828180258115	7.11434678848379	7.33780553660221	7.0209156854278	-0.3423121505956	0.15544175232293	0.525131844388404
Merged-chr8-22708732-3	chr8	22708235	22709235	+	987.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2152.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	3.53811378471846	3.96873408648863	3.80872935228509	3.9198020019206	3.83333519089647	4.02418775173483	0.429993380296372	0.429156144272126	0.795655168027537
Merged-chr1-180296221-4	chr1	180295709	180296709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-34267.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	6.28246301868119	6.14254751190657	6.45908245987252	6.00178587575879	6.09879929832919	6.18000237957995	-0.337214253153086	0.242364800456796	0.639501833404443
Merged-chr15-75909554-9	chr15	75909123	75910123	+	945.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285430)	promoter-TSS (NM_001285430)	-67.0	NM_001285429	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	7.4241414717077	7.07725108364861	7.21496524082472	7.24848277309753	7.00007800342233	7.17641592512486	-0.158988453227211	0.527807156277335	0.850147657901325
Merged-chr17-71251346-4	chr17	71250813	71251813	+	930.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357336)	TTS (NM_001357336)	46659.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.67748816107778	6.63672478501733	6.46527914463989	5.50886584201425	5.44650916782145	5.28708189930572	-2.04880629498798	2.68374389196987e-11	4.02358489663116e-09
Merged-chr8-54528015-2	chr8	54527515	54528515	+	884.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 2 of 4)	intron (NM_029701, intron 2 of 4)	1983.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	3.40636708218884	3.28964829508568	3.74470538017512	3.32205990151149	3.2226806358873	3.62192782860823	-0.353454846995527	0.575863293179271	0.87142885060749
Merged-chr6-146643279-3	chr6	146642723	146643723	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025315, intron 1 of 3)	intron (NM_025315, intron 1 of 3)	644.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	6.68640687474829	6.79620377086898	6.49322947616907	6.87963398393321	6.80396817098317	6.53436715588004	0.129367049556923	0.632645098418038	0.895615821573662
Merged-chr10-94920322-2	chr10	94919822	94920822	+	772.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24256.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.3005310086208	4.27336890843193	4.54124838847433	4.201118170062	4.01585396619261	4.32333648892269	-0.524075572822938	0.265010704207928	0.662829466025409
Merged-chr5-43231683-2	chr5	43231183	43232183	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1780.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.82864990201461	4.03676849543105	3.73369352518043	3.75903830967519	3.84920752305681	3.69534735351526	-0.334116366902433	0.531926202249027	0.851867550687707
Merged-chr9-65574797-3	chr9	65574284	65575284	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	5303.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.22796978944893	6.90331368891602	7.11258165765361	7.23340183285696	7.50601986597627	7.26729439974332	0.388536684738464	0.122878803030809	0.469055689773584
Merged-chr8-25994182-4	chr8	25993783	25994783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029037)	promoter-TSS (NM_029037)	-162.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	7.33161553845899	7.6672710291646	7.2928750697626	7.32779029203253	7.36463114277986	7.10161043203069	-0.254020574548648	0.314748514842477	0.709088999550579
Merged-chr3-69005935-4	chr3	69005430	69006430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 1 of 23)	CpG	1192.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	6.93167489804984	7.17397589037133	7.01114806000536	6.99382775385522	6.9984605151721	7.31978801524107	0.0912121050256105	0.721321672797083	0.928451291671431
Merged-chr7-98338483-3	chr7	98337976	98338976	+	925.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17268.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.39308275462095	6.16807801029165	6.2721930062485	5.99835191955436	6.43996289500994	6.29254593655434	-0.031057972779536	0.916882049972438	0.981431795618389
Merged-chr11-121748130-4	chr11	121747605	121748605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45678.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.36562958312376	7.13107130534787	7.35152771996881	7.39072236151578	7.44916631138461	7.46117261056083	0.221351250508965	0.34115630942082	0.730686899066382
Merged-chr7-28436489-4	chr7	28436007	28437007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-316.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	7.42526143844583	7.34743341698486	7.00118256502984	7.50269944713783	7.25797936372636	7.31375946256095	0.120958219647583	0.633548742233606	0.896059441151508
Merged-chr4-147420327-2	chr4	147419827	147420827	+	571.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-132950.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.49579125187936	3.8692277026755	3.6039583662301	3.47815127031267	3.64135495713096	3.77757138603795	-0.122314847685868	0.832001912281722	0.960550696133584
Merged-chr11-3671375-4	chr11	3670879	3671879	+	926.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 5 of 25)	intron (NM_198162, intron 5 of 25)	12679.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	3.65526755755541	3.78187513738873	3.73788933191099	3.71310365163053	3.67259682481134	3.95340875728638	0.168285120232488	0.754085661201893	0.938697959552771
Merged-chr13-98255212-4	chr13	98254736	98255736	+	977.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178918, intron 6 of 12)	intron (NM_178918, intron 6 of 12)	7756.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	3.8702644031159	3.77529464421118	3.54617289053179	4.17652801862261	4.00904559172097	3.90170722526595	0.898002454348867	0.0962873440662815	0.413664207546446
Merged-chr7-113197354-4	chr7	113196786	113197786	+	972.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10179.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	5.45562471735862	5.81461960410107	5.67159457673371	5.77053128206782	5.34632968551228	5.5109291190965	-0.196509415682923	0.571407598805529	0.86951013114995
Merged-chr15-31410222-4	chr15	31409701	31410701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42442.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.75082206124794	5.05077879543714	4.97740211385321	4.3548391410753	4.53499558945585	4.50656671035852	-1.08886016451635	0.00948501527975482	0.0968735916776531
Merged-chr2-29640686-6	chr2	29640194	29641194	+	881.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	20974.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.33609208004733	5.79812203826695	5.96575771542931	5.84738931009319	5.54114950948036	6.08892691213426	0.208004106673031	0.57085806251306	0.869268752259116
Merged-chr5-72167406-2	chr5	72166906	72167906	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	783.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	6.07786776450433	6.63844021395533	6.16047581892964	6.35972022348682	6.42919596668971	6.06102502876228	-0.0404828584231039	0.899665138207219	0.976683360561224
Merged-chr3-35754562-4	chr3	35754063	35755063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151627, intron 1 of 31)	CpG	500.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	6.0758401024925	5.85765189601827	5.83428920177985	6.25861054611881	5.75724140123801	5.79200567925756	0.0482717665068811	0.883419619109909	0.973362870329156
Merged-chr5-138683611-3	chr5	138683105	138684105	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60746.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	7.02094428028585	7.37957042647881	7.26008017482082	6.6729092552765	6.72470500417076	6.96143517364218	-0.676956846243512	0.00940360102309807	0.0964089248311908
Merged-chr13-23532368-2	chr13	23531868	23532868	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153173)	TTS (NM_153173)	1324.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	5.63912259846412	5.9148695996855	5.97597264537888	5.96153153439404	6.45579601115413	6.20942030377937	0.664087442688036	0.0380596494995336	0.241492873084892
Merged-chr2-18672335-4	chr2	18671823	18672823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147778)	promoter-TSS (NM_147778)	-139.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	7.54803850477538	7.7989895572149	7.5052688020145	7.65971027162161	7.54244096662009	7.71288104280024	0.0106157889739293	0.963501472139514	0.991116725160803
Merged-chr9-65454379-2	chr9	65453879	65454879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	3.64603294580174	3.29447418842377	3.61484328215354	3.91428302404754	4.09742500574289	3.38877739354235	1.03941407370089	0.102081239761227	0.426069687497354
Merged-chr19-29512215-7	chr19	29511704	29512704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 2 of 3)	(GGGAGA)n|Simple_repeat|Simple_repeat	9783.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.64416099066934	5.52543487563472	5.83502061548141	5.89692940174702	5.44607874186275	5.72314646718105	0.054830468790448	0.871453722373514	0.970222087171093
Merged-chr6-31220372-4	chr6	31219863	31220863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	12.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	7.64558694793387	7.71348271725206	7.5090543511862	7.22134350225291	7.35215868148244	7.33257286469442	-0.478527070344617	0.0355606935524792	0.23154661468931
Merged-chr7-80114123-3	chr7	80113588	80114588	+	568.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	1262.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	4.4627699834935	4.57443360974291	4.71996632866639	4.40424112111687	4.4105414280591	4.74823046313696	-0.156573151759371	0.719321592788875	0.927777045380255
Merged-chr11-103310098-4	chr11	103309590	103310590	+	796.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34612.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	5.86972522703098	5.37912019652483	5.94809564863273	5.92513006554223	5.79969050179027	5.71596780796528	0.126961323031698	0.710704375073552	0.924437855887449
Merged-chr1-58618436-4	chr1	58617934	58618934	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32037.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	4.59496471487989	5.11771680079452	4.9579373718677	4.93935636267986	4.93233161695455	5.50078425829616	0.492992164501436	0.255025056081663	0.652024436103169
Merged-chr10-21992154-4	chr10	21991649	21992649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-74.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.68563382419913	7.49489588645142	7.8630998036931	7.65259325423281	7.93409039950134	7.63899733233392	0.102841348367517	0.671572747271366	0.910546279207362
Merged-chr8-79163069-4	chr8	79162568	79163568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	85515.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	6.23248876308761	6.15854053387212	5.76956475293895	5.5586524310936	5.46902062065901	4.94977335007777	-1.29104677242944	0.000596739507435281	0.0121009514663946
Merged-chr7-141057206-4	chr7	141056701	141057701	+	958.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4073.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	4.62014474739457	4.93904190684333	4.97805628221079	5.2317270769268	4.8509669184447	4.89823753958026	0.336748096313746	0.40765797020229	0.781792301663873
Merged-chr5-130026841-2	chr5	130026341	130027341	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2460.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	2.31730753293372	2.17613796219965	2.33432947624231	2.33988039048465	2.1765202633074	2.53465587727192	0.507906168373073	0.556923928100829	1
Merged-chr16-45759382-1	chr16	45758882	45759882	+	546.0	f1_balb.idr	intron (NM_001357078, intron 12 of 16)	intron (NM_001357078, intron 12 of 16)	-16427.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	2.23684215190101	2.13003423395142	2.44005294126363	2.20755936778346	1.95441477373368	2.32655286614343	-0.717704364634806	0.448826230116135	1
Merged-chr6-116004910-4	chr6	116004415	116005415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.91609237207344	5.59308784446567	5.50621216473941	5.23488451515631	5.58388995126956	5.38588414049843	-0.514700065537016	0.144059165286592	0.50668833616744
Merged-chr14-66230142-3	chr14	66229655	66230655	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-16331.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.5115570955766	6.06187835674709	6.27230537999904	6.45912554159673	6.21041077110858	6.05046522661481	-0.0682785346006684	0.824965602990769	0.95862923400744
Merged-chr11-23762862-4	chr11	23762372	23763372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	8098.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	5.76736916726092	5.43938380305284	5.29924580126674	5.41933329282568	5.40954469122117	5.26325970921227	-0.300641296737648	0.394928267618142	0.772579826044138
Merged-chr4-115857485-4	chr4	115856968	115857968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 3 of 11)	intron (NM_001355174, intron 3 of 11)	18270.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	6.33996443314049	5.90335046253088	6.08382290578931	6.18510951927933	5.78545829795882	6.10085350878267	-0.163540328387978	0.610113900074254	0.885428451824695
Merged-chr7-3695110-2	chr7	3694610	3695610	+	820.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164205, exon 3 of 5)	exon (NM_001164205, exon 3 of 5)	602.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	5.25318782318332	5.41192992355823	5.57252479527179	5.61485874358591	5.73988703113288	6.0766947569262	0.754816797608318	0.0275619692780573	0.197988955734786
Merged-chr8-25974891-2	chr8	25974404	25975404	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	1840.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	4.8092467751223	4.57556807688874	5.12519039941112	5.87864162087945	5.95465379995258	5.93333632473352	2.16167272820085	2.81117305409502e-09	2.87361286836779e-07
Merged-chr5-150900886-3	chr5	150900395	150901395	+	638.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-51712.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.4441062589909	4.3027855659871	4.22747043638468	4.20812774296282	4.22922839336821	3.99952027993856	-0.4789690652515	0.309896730079657	0.705462734304293
Merged-chr13-20209066-4	chr13	20208578	20209578	+	877.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	118571.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.38826529418196	5.58206163223645	5.40025103574717	5.51842608893247	5.55195943030563	5.23545268423752	-0.0195933153059327	0.954407269759106	0.989574212185713
Merged-chr1-85332972-1	chr1	85332472	85333472	+	964.0	f1_balb.idr	Intergenic	Intergenic	-62406.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.67354328610962	2.70125983622432	2.85588417703042	2.48009631920148	2.34782654016184	3.54577245069131	0.848586846187604	0.590625576987045	0.877301111216348
Merged-chr3-123509385-2	chr3	123508886	123509886	+	811.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	6.69416699902564	6.84625415284002	6.542792034024	6.27715124652889	6.69331372640501	6.29410690476441	-0.408934134753479	0.159581402688914	0.531877190382303
Merged-chr12-100053805-4	chr12	100053311	100054311	+	947.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	-58520.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.31495003546445	5.81146957158348	5.81995293059464	5.71587338206242	5.62186410326277	5.48570997956499	-0.709589829777212	0.0364953673331792	0.235057398023003
Merged-chr16-92697930-3	chr16	92697561	92698561	+	925.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-732.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.78114992412661	7.27227815041869	6.81763658973518	6.89480959672006	7.11195924361341	7.19755213744511	0.132491792312489	0.634779690587087	0.896354115104213
Merged-chr7-141013251-2	chr7	141012751	141013751	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2507.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	3.01767772320169	2.87892496982458	3.11851121873249	3.0964542050425	3.03251065129569	3.01472227062884	0.206338201996812	0.757648128112871	0.939883186830738
Merged-chr2-161177902-1	chr2	161177402	161178402	+	688.5	f0_balb.idr	Intergenic	Intergenic	-68816.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	3.23399436124171	3.48649821259826	3.10942220085719	3.0721135909523	2.86559920265962	3.18278428611819	-1.1013607382227	0.109786410999796	0.442914312071324
Merged-chr15-79323636-4	chr15	79323187	79324187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4684.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	6.16231040691561	6.04093306002475	5.8004582788821	6.04273545564265	6.25594934161584	6.17105825031994	0.242164067649081	0.418976318896753	0.788801788481746
Merged-chr6-82996015-2	chr6	82995515	82996515	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B2_Mm2|SINE|B2	37456.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.39032430326993	4.06713202811442	4.10931779488784	3.97868822164562	4.38610446962501	4.2715217741732	0.0740786344201012	0.881248247190108	0.972635980891511
Merged-chr15-58415466-4	chr15	58414954	58415954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145959)	promoter-TSS (NM_145959)	-14.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	7.95625704428216	7.57540620368431	7.28826198990016	7.79579344561271	7.57712915844688	7.42662653350997	-0.0478920630346797	0.861923146616982	0.967996224966109
Merged-chr12-99565593-2	chr12	99565093	99566093	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	1752.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.75475063054881	3.8258470087943	3.88635584591258	3.8312626073781	3.91927744829748	3.69681028431247	0.0191828298292018	0.970789978542711	0.993560292853483
Merged-chr2-124659644-2	chr2	124659144	124660144	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 14 of 17)	exon (NM_172537, exon 14 of 17)	6063.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.84673133702303	3.03856300440608	3.52597978145477	2.91546085033134	2.94610743129598	3.24388463612159	-0.529484109676262	0.472367831526238	0.820550293768681
Merged-chr8-115422765-2	chr8	115422265	115423265	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	284129.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.20278208832825	4.95142344672635	5.35145311525005	4.98390430665939	5.01039612969531	5.03508838706764	-0.337503301090076	0.368307988732888	0.753328854415725
Merged-chr16-24433616-4	chr16	24433109	24434109	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-14482.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.84000237487998	5.58046403088108	5.40146527063572	5.05282297360619	4.65747342086159	4.82528834834878	-1.58907639621119	3.37193888418311e-05	0.00113638027814949
Merged-chr18-32375615-4	chr18	32375112	32376112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 1 of 2)	intron (NR_045403, intron 1 of 2)	-1605.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	4.8624380384365	4.93111683355537	5.07079634507363	5.02681862098469	5.15314726748204	5.43598268759046	0.540479457380116	0.152356400630075	0.520327999656348
Merged-chr11-61579083-2	chr11	61578583	61579583	+	899.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 1 of 10)	CpG	604.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	4.47614407372116	4.4672934776355	4.64544188092393	4.94523446742958	4.44378526659221	4.71164067013187	0.444913078208165	0.309057879088741	0.704802606494279
Merged-chr17-37203768-4	chr17	37203265	37204265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5799.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	3.03414057324727	3.20522239510682	3.14689031567124	3.00700665910407	3.17699904873856	3.21834215554618	0.0249693728616575	0.969373054505973	0.993124592077286
Merged-chr11-117139334-4	chr11	117138874	117139874	+	745.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	24202.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	5.07887686723287	4.90632330455975	4.44326273454756	4.54198919367475	4.4536356930798	4.3691377723399	-0.921937003357251	0.0403766531920299	0.250333194324632
Merged-chr4-149702844-5	chr4	149702276	149703276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1147.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	7.7062467712203	7.43213560779386	7.29719784011559	7.62731891742871	7.97350509150616	7.53066936714614	0.343747274815355	0.186108965306392	0.57061089624098
Merged-chr16-91487565-2	chr16	91487065	91488065	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	2350.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	3.16512770344553	3.14165269755529	3.44009545945083	3.40450804932783	2.9054149300908	3.2957504750927	-0.140940960424271	0.836873021416446	0.962001762335242
Merged-chr11-4989328-3	chr11	4988811	4989811	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	2487.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	4.47366886057027	4.43035377696424	4.3849470151381	4.20083579079761	3.88517060921347	4.27724220736771	-0.851463063745548	0.0730250303818314	0.355092419106101
Merged-chr10-68063653-4	chr10	68063175	68064175	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	84105.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.02163111610074	5.23069492279526	4.53437022405523	4.41961257920524	4.34938111693475	4.26381051606869	-1.48700687848966	0.00116236103979052	0.0202423058599601
Merged-chr19-14595597-2	chr19	14595097	14596097	+	660.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302950, exon 3 of 19)	exon (NM_001302950, exon 3 of 19)	1616.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.9426285043075	4.08166629800885	3.97543436254036	4.24826961111638	4.27454969047116	4.41001027365644	0.857017030509433	0.0706190323740555	0.348355966669458
Merged-chr2-170175674-2	chr2	170175174	170176174	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-32999.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.04227063888502	3.75840333388592	4.38481991613075	4.15450231700446	4.16338118082722	4.41093321473117	0.46534348289845	0.370804235998395	0.755054550130175
Merged-chr9-14998785-3	chr9	14998287	14999287	+	896.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46691.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	3.32910309402989	3.09682815794706	3.08375541071928	2.94683407695136	2.95726554828496	2.90899249903129	-1.09645644781103	0.10896198533971	0.441063868269437
Merged-chr12-73445000-2	chr12	73444500	73445500	+	800.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35437.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	2.73995004733595	2.63080809819654	2.7915832592776	2.50333071047653	2.36336221924372	2.74539357706972	-1.04344817998246	0.19864319246348	1
Merged-chr2-154593271-4	chr2	154592763	154593763	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	10410.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	3.78195605030829	3.96506509333276	3.83605877839534	4.0131210014344	4.21801308408256	4.40786017362757	1.02932620877835	0.0424563997176645	0.258213170908409
Merged-chr7-110248824-3	chr7	110248315	110249315	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 2 of 11)	intron (NM_009302, intron 2 of 11)	27112.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.96419745944955	4.00084038894877	4.08138737603559	3.97121012941901	3.98161005866631	4.14889569664955	0.0528132179007596	0.913786056842347	0.980796798598326
Merged-chr13-99184897-5	chr13	99184395	99185395	+	782.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	72.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.39822698339743	6.51678985685281	6.31073323770358	6.74422114912812	7.14550074955516	6.43221810771156	0.643890849350637	0.0346587272936031	0.22824561777967
Merged-chr9-31029870-3	chr9	31029308	31030308	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-836.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	6.43240377958647	6.69266874007079	6.68033333151004	6.43991371960292	6.73180572891132	6.72343398432828	0.054815147933061	0.841004319847788	0.962832831784718
Merged-chr2-75697419-2	chr2	75696919	75697919	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	7244.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.93015133857922	6.21575620040496	6.14157011831807	6.0856447975159	6.17383700955662	6.34032595390761	0.166061434377274	0.571199755225753	0.869428183241799
Merged-chr4-55488808-4	chr4	55488306	55489306	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B|LTR|ERVL	43669.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.33611689571346	3.34496992994525	2.90605576167261	3.28964244086929	3.24646236912146	3.23757389736253	0.165186103899747	0.810827920253646	0.955096593239846
Merged-chr7-120982380-4	chr7	120981883	120982883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007672)	promoter-TSS (NM_007672)	-71.0	NM_001354986	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	6.0184566462295	5.92627901015365	6.1310722601853	5.74535450196969	5.94116748024486	5.63396296272227	-0.405683086040995	0.190350267013751	0.576601442268746
Merged-chr19-56530748-1	chr19	56530248	56531248	+	805.0	f1_balb.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17374.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	4.08444695023417	4.01336571137482	3.71096722100356	3.43554629604314	3.27065583044478	3.78228551906456	-1.54872514103683	0.0107008543335455	0.105406242571791
Merged-chr9-49484929-3	chr9	49484480	49485480	+	792.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	1245.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	5.44690016523186	5.50689639863123	5.20953192299602	4.29253636143538	3.9584813624616	4.47313863374033	-2.81704794939917	3.74531810904055e-10	4.41417038551057e-08
Merged-chr10-14188087-4	chr10	14187480	14188480	+	917.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	221601.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.39665285748105	4.3057313049029	4.14438873996076	4.32168838028548	3.96295502305968	3.95883338759617	-0.548741601903187	0.265258993271237	0.663013396735394
Merged-chr2-11535585-4	chr2	11535071	11536071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	18358.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	7.64181342979281	7.63836623849582	7.56663433712332	7.64966819726039	7.7874683102685	7.18399331156845	-0.0581322298047831	0.821760943789699	0.958023303204974
Merged-chr19-55814636-3	chr19	55814135	55815135	+	745.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	72825.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.97313459444086	3.98300413292929	3.9916216585469	3.96477661164357	3.96172003095115	3.91185908981707	-0.102874303361007	0.834513076269722	0.961319929864283
Merged-chr7-35037816-2	chr7	35037316	35038316	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	18750.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	2.99114103861943	3.2822182346078	3.64067958175784	3.07543444173092	2.93071097071232	3.46853184450125	-0.609621070397675	0.399499778361871	0.775892854327067
Merged-chr4-45013233-4	chr4	45012731	45013731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-819.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	7.83377358724545	7.97987998887295	7.51981696697513	7.76729707140098	8.0191346439617	8.01687106289879	0.199648089795681	0.412200861413954	0.784340123865907
Merged-chr3-121630177-2	chr3	121629677	121630677	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13308.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.74095537098026	3.64923569135013	3.75752540525644	4.03948395034203	4.09064100539075	4.29540773414673	1.32035652316158	0.0101871271699366	0.101688374658598
Merged-chr1-138157112-2	chr1	138156612	138157612	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	18014.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.29392367183737	5.36815177950405	5.09125706911747	5.39365090568345	5.25948284359165	5.417136194091	0.1729777166174	0.620847205688729	0.89037322114698
Merged-chr10-80420823-4	chr10	80420348	80421348	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 5 of 18)	intron (NM_001164153, intron 5 of 18)	12805.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	5.57465184862343	5.62993321000336	5.27492792437577	6.14510539773321	6.0763364433838	5.60269881906715	0.829922384474513	0.0170141576217118	0.144948707626435
Merged-chr7-128298047-4	chr7	128297523	128298523	+	876.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145590, exon 1 of 13)	exon (NM_145590, exon 1 of 13)	108.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	5.44627985969329	5.56460404459158	5.32979425419818	5.49250499190871	5.51858794814381	5.22662099082847	-0.0537179878502621	0.875520594914734	0.971052726689041
Merged-chr3-100921649-2	chr3	100921149	100922149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-844.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	6.3203513658195	6.64531456130013	6.32044260105579	6.47093779657509	6.7987243504493	6.53210853675086	0.274523946518512	0.338635553882218	0.728588578553954
Merged-chr1-123934526-4	chr1	123934018	123935018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111041.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	6.93228920170923	6.8981823321517	6.94647768894715	6.84297700329028	7.1772285019429	7.01811836967598	0.153807913316059	0.539698962614888	0.856057704035328
Merged-chr4-26346847-4	chr4	26346336	26347336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-184.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	6.46259874624628	6.81757672194503	6.85908482891077	6.62790415837533	6.60796148672638	6.83232691069133	-0.0527944811944873	0.84762375634376	0.964318271116593
Merged-chr1-33670431-4	chr1	33669934	33670934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008922)	promoter-TSS (NM_008922)	610.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	6.37882347199112	6.90946582811286	6.5890286872894	6.03321814764948	6.29022077551584	6.36386056170336	-0.672756662842887	0.0265230998387388	0.19357372961861
Merged-chr8-4109058-4	chr8	4108536	4109536	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	3.40344692944577	3.78171333979307	3.79570458504339	3.45757165055362	3.16569443153298	3.76917926851464	-0.667900189931281	0.297908668868787	0.694722247673385
Merged-chr17-71294259-2	chr17	71293759	71294759	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	(TG)n|Simple_repeat|Simple_repeat	16752.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.72260280591046	3.57733082431814	3.99260232429495	3.9007704592652	3.6207072117763	3.82375444253678	0.0532418166613	0.9234371403539	0.982699256056545
Merged-chr1-133131159-4	chr1	133130664	133131664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133819)	promoter-TSS (NM_133819)	-2.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	8.38562071346044	8.66886800461595	8.3319599086352	8.31228918003158	8.38814875129973	8.38754404559664	-0.156168109222304	0.470765949354672	0.819693084328776
Merged-chr1-52817338-4	chr1	52816823	52817823	+	850.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	CpG	365.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	4.54707894686006	4.45519142033089	4.46657411447878	4.55144208605329	4.4975072106771	4.2593623285927	-0.103269234640689	0.813141412925888	0.955933854959943
Merged-chr14-16373980-3	chr14	16373481	16374481	+	755.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	8775.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	3.99571894590265	4.11339672342465	3.86428170767994	4.07209219711993	3.97523273114342	4.43341164565412	0.469845268887925	0.359100705257852	0.745343050659493
Merged-chr16-97922577-4	chr16	97922078	97923078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174847)	promoter-TSS (NM_174847)	55.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	7.28241687739274	7.20622746593635	7.16530524786493	7.0634156489729	6.79101791400757	6.99118095845693	-0.413134145438078	0.0907417937405734	0.40083044930539
Merged-chr13-35087890-3	chr13	35087394	35088394	+	672.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79910.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	2.97283295276594	2.88956481158145	3.29155021354866	2.71566519948663	2.67592066525527	3.25895504614039	-0.690023380927177	0.376905192444843	0.759474066768804
Merged-chr6-115343791-4	chr6	115343289	115344289	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17162.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.46118356356821	6.61960402668971	6.60474373870674	6.53192024036915	6.7435467918867	6.56172569944588	0.0956909817986302	0.716789755081717	0.926833179606215
Merged-chr9-21291358-4	chr9	21290856	21291856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009878)	promoter-TSS (NM_009878)	-147.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	6.19868784887558	6.02491510316652	6.44685446373533	6.24842805290369	6.36802406548402	6.41769564549496	0.201805640669276	0.486601476304359	0.827964820259562
Merged-chr16-22070735-3	chr16	22070232	22071232	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 10 of 15)	intron (NM_183029, intron 10 of 15)	61248.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	5.58518601809413	5.71778170579201	5.64744017950022	5.62623474058335	5.77126774049418	5.24455698115254	-0.128137365891211	0.709967886814504	0.924166640014037
Merged-chr13-12370116-4	chr13	12369624	12370624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25251.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	5.35561417587988	5.56080658416863	4.80867455570203	4.87915964521434	5.20742951661638	4.70074800699554	-0.681283992920194	0.122005459805379	0.46724491643973
Merged-chr2-59286512-4	chr2	59285936	59286936	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 3 of 20)	intron (NM_175464, intron 3 of 20)	100246.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	3.90191055483821	4.01470594573414	3.78925512182299	3.46700036264932	3.58702105710531	3.7562665525792	-1.02387993286719	0.0625902354502387	0.325358175257291
Merged-chr14-31434222-5	chr14	31433784	31434784	+	911.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 1 of 8)	intron (NM_011894, intron 1 of 8)	1816.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.93072011630692	7.12968954117473	6.98252690175825	7.22662820401738	7.23374836630978	7.12003129002746	0.268705413840331	0.261641764931934	0.659457534066706
Merged-chr15-38302908-2	chr15	38302408	38303408	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.78752953992575	3.8297620050556	3.86745440867673	3.70362254320717	3.67825826353249	3.88755821459999	-0.241640552772419	0.645241402636306	0.900460238105405
Merged-chr4-145209486-3	chr4	145209011	145210011	+	805.964294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14506.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	3.02435748413064	3.13365965414855	3.37607399480504	3.24058235419287	3.21444622471128	3.28423305379473	0.277703799726414	0.664410677671105	0.907585158243155
Merged-chr10-94917372-4	chr10	94916862	94917862	+	846.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	27216.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.48737951364852	4.16327336249536	4.11436670447026	3.68409070878196	3.87362187669262	3.71241477354215	-1.51485104703198	0.00457984693505016	0.0575736370708044
Merged-chr3-27271531-2	chr3	27271031	27272031	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45546.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	3.68423048171653	3.48456138937117	3.6865278926518	3.94892285134617	4.01982765532343	3.70362296591411	0.942856253426725	0.0847349511886981	0.38547093716192
Merged-chr6-122818610-2	chr6	122818110	122819110	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1574.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	4.37682119758975	4.39427852526695	4.73123937487519	5.50600565726091	5.08423659726978	5.25227659218864	1.77487657360075	1.71611987607277e-05	0.000640048868885088
Merged-chr7-129859860-3	chr7	129859364	129860364	+	952.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102301.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	2.9682300224558	3.52450926724977	3.21197755455349	2.85531259425759	2.74517934139439	2.71840577734882	-2.39854391850098	0.00244763248137213	0.0361232003387748
Merged-chr12-17691470-4	chr12	17690942	17691942	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	CpG	633.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.22878650824924	7.45518376410985	7.6502096994554	7.58720434099745	7.39315153726612	7.69824647602019	0.160971838765026	0.518634940976418	0.845422019837641
Merged-chr16-30415435-2	chr16	30414977	30415977	+	793.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26947.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	6.68973090858005	6.39844457032107	6.24274787119274	6.7215403664673	6.83827200120283	6.59410900914973	0.41471342085859	0.141693750095542	0.502409918521747
Merged-chr10-128922681-2	chr10	128922181	128923181	+	725.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_015740, exon 2 of 4)	exon (NM_015740, exon 2 of 4)	843.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	5.1343606787752	5.10200717467434	5.38244819477635	5.22596767046535	5.38122102631856	5.26298330203793	0.191521406832117	0.588760102851809	0.876650937479947
Merged-chr8-117293081-2	chr8	117292581	117293581	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	36062.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	2.48463675043376	2.61400709535749	2.71382277817336	2.63274250905789	2.47612008093269	2.72643364303231	0.0379165877045934	0.960985039126187	1
Merged-chr17-48261325-2	chr17	48260825	48261825	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-2970.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	4.90120612359092	4.78415576224575	5.11301640114209	5.20850638613379	4.69596968074559	5.17659959184681	0.230292014479506	0.575900977806523	0.871439170767339
Merged-chr3-103914398-4	chr3	103913841	103914841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356556, exon 1 of 8)	5' UTR (NM_001356556, exon 1 of 8)	221.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	7.04713655121771	7.12425031059249	6.8860583656708	7.07041519543007	7.01033026490343	7.06878270921808	0.0282938018419382	0.906872154519188	0.978868492078838
Merged-chr9-58588863-4	chr9	58588366	58589366	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	6626.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	6.28257842077305	6.24894511563398	5.88966522153957	6.23340338823947	6.09276523774508	6.54331923985174	0.217544427702267	0.485350796109102	0.827436882501367
Merged-chr6-112760846-4	chr6	112760340	112761340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 10 of 21)	intron (NM_080448, intron 10 of 21)	-64170.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	4.23178043235754	4.33163708913656	4.05923350698092	4.15251640951461	4.19095382715499	4.22434976294439	-0.0888338981016518	0.849719129748132	0.964699762930784
Merged-chr7-46795818-4	chr7	46795382	46796382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291075)	promoter-TSS (NM_001291075)	-1.0	NM_001005247	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	8.63588093229536	8.72107605723133	8.23502155134292	8.52887370361431	8.57922601230027	8.20236120728102	-0.14035294200274	0.565339031507608	0.866599059240356
Merged-chr18-80932752-4	chr18	80932256	80933256	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015805, intron 1 of 28)	MIR|SINE|MIR	1302.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	3.61097173572304	3.39274987510654	3.54659560582879	3.60405859092716	3.27224516355269	3.56391895255841	-0.133408907215885	0.822940736655671	0.958203585272257
Merged-chr12-65037714-4	chr12	65037200	65038200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	1366.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	5.65967299008842	5.79624549706688	5.95077636548899	5.88988574648788	6.00070721773765	5.65739599668567	0.122016970346414	0.700532233637949	0.920919335036368
Merged-chr12-54999206-4	chr12	54998721	54999721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12885.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.61723384118229	5.43660440344722	5.45542418228292	5.20406935225126	5.21913853110394	5.06300203825354	-0.673428286531299	0.0514845442258088	0.289298079142429
Merged-chr19-55820430-4	chr19	55819922	55820922	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-74899.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.67049820936301	5.25054643597637	5.26415065317296	5.45114304953688	5.20716123110968	5.00628048181903	-0.34793519859048	0.359707264133321	0.746001337716324
Merged-chr13-49684164-4	chr13	49683656	49684656	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2026.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	4.73798798730434	4.82141109444301	5.05108106344699	5.11059430241788	5.018801808026	5.17982660885008	0.505132337498489	0.183129049517422	0.566103278680597
Merged-chr10-128412329-2	chr10	128411829	128412829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	713.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	7.38065199323659	7.37522565110812	7.42176344695657	7.45957975793448	7.80130646322101	7.75944908688319	0.426417921960544	0.0687295320067026	0.343000473772789
Merged-chr19-55895593-2	chr19	55895093	55896093	+	853.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001142924, exon 1 of 12)	5' UTR (NM_001142924, exon 1 of 12)	272.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.41822714701284	3.15957499967829	3.60079919835519	3.36093650956968	3.28207549635881	3.41086099137978	-0.189453622487017	0.760668508525958	0.94097444780905
Merged-chr4-134758661-4	chr4	134758171	134759171	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 2 of 8)	intron (NM_145554, intron 2 of 8)	9333.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.55064547853769	4.50416451301365	4.34827206067218	4.45463362626194	4.15755251126314	4.07512133372893	-0.609442862451269	0.190541276314599	0.576949468718024
Merged-chr6-120470884-4	chr6	120470414	120471414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	7717.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	7.61448871612736	7.56938162831634	7.23982227875812	7.13286346954754	7.31108803872208	7.29729807143717	-0.359340789072024	0.14271112457672	0.504233853663683
Merged-chr7-43661474-2	chr7	43660974	43661974	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1313.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	5.1655951950835	4.97877382899849	5.16773904865942	5.49322716313131	5.18727058207503	5.9136179177942	0.886223655021666	0.0231369155060101	0.177864732960748
Merged-chr11-74831388-4	chr11	74830903	74831903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	479.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	9.29406567483152	9.46961917288009	9.08517938089138	9.09168638236575	9.45347513945749	8.93600573541627	-0.150407696782524	0.528615114591005	0.850585575598857
Merged-chr11-120539163-4	chr11	120538652	120539652	+	916.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008101)	TTS (NM_008101)	8425.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	3.60661045218532	3.30151777237413	3.56540936170593	3.60868782534978	2.99574870259274	3.63591413474314	-0.182749247678238	0.789622982744744	0.949278919326382
Merged-chr18-60735388-2	chr18	60734888	60735888	+	560.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-2247.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.34777851091958	5.20931245443276	5.43127174384241	5.57219424173714	5.57877160331004	5.55148025479745	0.46912489454775	0.155722344901115	0.525695588872604
Merged-chr17-84187198-4	chr17	84186702	84187702	+	878.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001806, intron 1 of 1)	CpG	745.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.44225754860877	6.76426506584164	6.84588072522932	6.4940548156511	6.66564827550082	6.78926423620685	-0.0609578979451857	0.826128265556047	0.959084742097967
Merged-chr14-63413081-4	chr14	63412589	63413589	+	737.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	4098.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	5.21902809429536	5.44352255275142	5.27021145679566	5.35314133513327	4.82471694871554	4.78497634768121	-0.613346969863968	0.125485614634467	0.474078843870859
Merged-chr11-20247211-1	chr11	20246711	20247711	+	743.75	f0_balb.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	2213.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	2.95799467185013	2.92903454936869	3.12195905007507	2.66608222924712	2.51687134428812	2.7865649301109	-1.92901436232066	0.0135620210266638	0.124075716941907
Merged-chr14-31397287-2	chr14	31396787	31397787	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	20390.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.54226031123089	5.52847976363613	5.86586282532886	5.53557892302352	5.23736279770006	5.63555968253413	-0.333132410466962	0.339143496460983	0.729057813336113
Merged-chr1-172513123-4	chr1	172512610	172513610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8020.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	6.54200369696128	6.24195603093048	6.09899285572628	7.17668533890114	7.68618893107913	7.20203193403404	1.64645534755062	3.68645694236317e-08	2.95228786583402e-06
Merged-chr12-116404642-2	chr12	116404150	116405150	+	687.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133762)	promoter-TSS (NM_133762)	511.0	NR_028421	319545.0	Mm.390543	NR_028421	ENSMUSG00000112980	D430020J02Rik	-	RIKEN cDNA D430020J02 gene	ncRNA	3.3659070463704	3.58687898908267	3.32015743296441	3.45577522379676	3.65323446166265	3.61653645371035	0.520089226574271	0.379730060923509	0.762043995600429
Merged-chr11-21265615-4	chr11	21265125	21266125	+	793.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 3 of 22)	intron (NM_001290628, intron 3 of 22)	26593.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.95700917454981	4.1837311872006	4.42948061309331	4.19978694078492	4.37267253113219	4.19405277754591	0.18762769031843	0.699274586974691	0.920558737649758
Merged-chr7-16255112-2	chr7	16254612	16255612	+	975.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4226.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	7.23780056877102	7.05574264158032	7.3065801790473	6.9749668141569	7.22035267027091	7.20495282550749	-0.0916197394188833	0.709826948504881	0.924148005169415
Merged-chr8-56293450-4	chr8	56292950	56293950	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.89828158050733	6.91414999739696	6.84760950970533	6.89851361388095	7.36537243241637	6.90610204372815	0.304311678505704	0.259725057699074	0.657295009003454
Merged-chr11-76771416-4	chr11	76770923	76771923	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	4.38632463917272	4.34211148609361	4.39944033522472	4.51637929259188	4.57077493115421	4.74597263881144	0.586002192671103	0.170017014405617	0.547289560416266
Merged-chr7-116332218-2	chr7	116331718	116332718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026533, intron 5 of 5)	intron (NM_026533, intron 5 of 5)	1972.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	2.98144728102827	2.7841995075408	2.98539216864746	2.96822381872465	2.64567247710102	2.81550551816248	-0.518963733278215	0.478593978883408	0.823834402333981
Merged-chr17-83563991-4	chr17	83563492	83564492	+	998.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49659.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	3.83994290353864	3.91043374116065	3.8297035370118	4.11084303685508	4.26868783188875	3.73445374136466	0.618563193618108	0.244922521844028	0.642351752939119
Merged-chr2-167959601-2	chr2	167959101	167960101	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	27274.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.78385138768659	6.7879447773562	6.62936569815728	6.67494775666796	6.85135192550428	6.4132640659585	-0.106833643614652	0.695128576542371	0.919230570201314
Merged-chr2-132104238-2	chr2	132103738	132104738	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3A|SINE|B2	40870.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.57183421990485	6.30220952444725	6.2243930397314	6.29556104178054	6.77479806326888	6.44462101236878	0.242091481953885	0.420796497501101	0.789927346042947
Merged-chr17-4997424-2	chr17	4996924	4997924	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	2350.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.92075163602488	5.08248063179829	5.13254304529274	4.96930611425436	4.99852978442568	4.99271852684838	-0.121927541285628	0.741605174357381	0.934887850059998
Merged-chr19-21644185-3	chr19	21643713	21644713	+	811.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	8578.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	3.44889463958579	3.44444586567493	3.40635195704656	3.55748978497645	3.60528395575334	3.74304670827604	0.718742658251927	0.205802921089691	0.596447652812717
Merged-chr3-54691990-2	chr3	54691490	54692490	+	751.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152184)	promoter-TSS (NR_152184)	-825.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	3.76204703997125	3.63875333319887	4.39401790329111	3.68934094947575	3.55909065199098	3.97199376038195	-0.685017021474241	0.255022756195067	0.652024436103169
Merged-chr10-99171490-3	chr10	99170964	99171964	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	63329.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.03992863308822	7.1095037649057	7.03478637801044	7.02865808277109	7.09175751358771	6.86717031345329	-0.0863418299386916	0.721115775715355	0.928416058823799
Merged-chr9-90214763-2	chr9	90214263	90215263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	51785.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.22678348655801	3.02389423731339	3.42779881270866	3.14870768664576	2.8148234255081	3.23245183822289	-0.684935482044167	0.32995742761924	0.721591085926769
Merged-chr7-59230584-4	chr7	59230066	59231066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	1816.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	6.36673230315882	6.35798423251909	5.93531911326646	6.52510700837311	6.61833713467024	6.4371539247802	0.463504345994304	0.111651587898164	0.446313714155454
Merged-chr8-115689292-1	chr8	115688792	115689792	+	573.0	f0_balb.idr	Intergenic	Intergenic	17602.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.53809300247142	4.43515768052518	4.15516063036218	3.71394328170881	3.43688606612756	3.69947922458737	-2.51490236067185	6.78083609297351e-06	0.000286988712931912
Merged-chr10-88621966-2	chr10	88621466	88622466	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16814.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	6.50659201426552	6.67621472655393	6.24302150376935	6.18839545485768	6.51268898929625	5.86931427501586	-0.427151949303492	0.188712757244668	0.574222837446979
Merged-chr19-23125426-4	chr19	23124922	23125922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15804.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.54065970416157	3.42647104231739	3.29772142896885	3.54772310772922	3.42028050317487	3.5947782403161	0.323909281914567	0.582457309932099	0.873748969583004
Merged-chr19-5272299-2	chr19	5271799	5272799	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	820.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	4.71123527623716	4.53245402808669	4.55892167743653	4.26116077517126	4.26709962793255	4.54423772384724	-0.635624558771863	0.147509888614173	0.512398881681894
Merged-chr6-124904248-4	chr6	124903742	124904742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008479)	TTS (NM_008479)	7463.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	7.02811267502331	6.81724946432505	6.9609095246153	6.93406487907552	6.96997525079985	6.68625993337783	-0.09096580919471	0.721913776978805	0.928606209603791
Merged-chr16-37654466-4	chr16	37653958	37654958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026610)	promoter-TSS (NM_026610)	-90.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	6.97733740881835	7.14546111442696	7.1186233083236	7.14160714657571	7.10319640413619	7.03435655596356	0.022106480773694	0.926021430196765	0.983305773102619
Merged-chr11-101226341-4	chr11	101225833	101226833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007970, intron 1 of 20)	CpG	130.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	6.43046900055085	6.83115709086442	6.72337010121414	6.25269152052176	6.27721470560409	6.25259193010999	-0.665213263825466	0.0176381004635533	0.148590772843104
Merged-chr5-72225293-4	chr5	72224811	72225811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21968.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.35611516623663	5.82519535177205	6.35026510466889	6.2739311618528	6.31685388672054	6.21403643802262	0.128239782096234	0.680228395925149	0.914178447009397
Merged-chr2-124690573-4	chr2	124690064	124691064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	36983.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.52414562320628	6.6621165717641	6.96680471247309	6.73317804704145	6.8732160257342	6.69229101195892	0.0823452676101234	0.761971993720255	0.941355820818144
Merged-chr2-170349140-2	chr2	170348640	170349640	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029815, intron 12 of 12)	intron (NM_029815, intron 12 of 12)	-7221.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	2.98503187874605	3.15091224468966	3.22830316874752	3.24159044029083	3.0061936759429	3.35382051491549	0.340558885185225	0.606153051104312	0.883894414431453
Merged-chr11-106779552-4	chr11	106779076	106780076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027785)	promoter-TSS (NR_027785)	-39.0	NM_015810	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	8.12630881291575	8.10709729493417	7.95222974018474	7.67561103823832	7.91062985959918	8.05228627311331	-0.257507033994978	0.257851936627012	0.65530508973032
Merged-chr1-86234019-4	chr1	86233536	86234536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-69185.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	5.22973185361846	5.48078271871464	4.85297285434284	4.60267687034583	4.65176791256204	4.91977510164887	-1.09017581743692	0.00862585431762656	0.0909222303092311
Merged-chr4-94979669-3	chr4	94979185	94980185	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-585.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	7.03469918992526	6.881373699596	6.86587985762885	6.94401950492181	7.04365685075534	6.65271251137418	-0.0465901232888904	0.85822098824366	0.966858173874259
Merged-chr13-102656908-2	chr13	102656408	102657408	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36639.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.16828161265421	3.21143909283193	3.37227425297974	4.01714817093495	4.17195037616215	4.73297900499672	4.12138244721901	1.74599337838172e-08	1.49465655378998e-06
Merged-chr9-59653555-4	chr9	59653048	59654048	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2820.0	NM_001253883	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	3.69299345841014	3.95995767073018	4.0571499249746	3.71452949741644	3.62465547051361	3.79714559993861	-0.65150146717215	0.22792003228562	0.622981752321771
Merged-chr5-122709420-1	chr5	122708920	122709920	+	589.0	f1_balb.idr	intron (NM_001310718, intron 1 of 10)	B2_Mm2|SINE|B2	1876.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	4.65001454846816	4.47193675442238	4.11487432936767	4.42246519569664	4.50824858858353	4.42789056172633	0.0319699429036412	0.945120917424841	0.987875414328125
Merged-chr10-80143751-2	chr10	80143251	80144251	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 1 of 2)	intron (NM_001347092, intron 1 of 2)	1436.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	2.70572474889864	2.71825593569843	2.76317210072071	2.48193786631436	2.49106383385724	2.83564639995571	-0.677059003874066	0.387535281549738	0.76768118438771
Merged-chr11-95309730-4	chr11	95309222	95310222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155298)	promoter-TSS (NR_155298)	524.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	7.93059426022434	8.39970656976887	7.65103399353093	7.79614148957474	8.13039108780578	7.79949358793908	-0.16665235524209	0.552038103950105	0.861546661145201
Merged-chr5-43866779-4	chr5	43866247	43867247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.68313599880979	7.84171497335975	7.92887458531627	7.80609586063495	7.89758857461884	7.93219464645667	0.0866537924051471	0.692481765399692	0.91870248759071
Merged-chr12-37241761-4	chr12	37241265	37242265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178767, exon 1 of 13)	5' UTR (NM_178767, exon 1 of 13)	126.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	8.00192303030233	8.18696904693073	7.82947004153366	8.18046110141062	8.63796620629346	8.16117820979433	0.469065850030532	0.0617822326588045	0.322609100412539
Merged-chr2-120099111-4	chr2	120098606	120099606	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	55469.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	7.07696139730063	6.78547958834577	6.84657863414353	7.09412572749573	7.31547846957203	6.69563993688467	0.245978891952185	0.387136436044868	0.767462350491678
Merged-chr16-11016576-2	chr16	11016076	11017076	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7678.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	2.91244132246711	3.0290913177856	3.1852906122744	3.1196950573566	3.20297277972604	3.20032646900083	0.591036241039068	0.367432746878899	0.752370902704484
Merged-chr4-127024675-2	chr4	127024175	127025175	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 4 of 9)	PB1D9|SINE|Alu	3374.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	3.80552175383776	3.83609621802383	3.87415282243316	4.01350265625649	3.92772995764473	4.17708426751285	0.608713305824704	0.227090746901121	0.622205764699148
Merged-chr4-149705541-4	chr4	149705043	149706043	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3914.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.06002249507714	5.4216945515702	5.84231328877308	6.80560266179987	6.85863875145801	6.83456677413368	1.7030255822228	6.7323296132366e-08	5.00164002194813e-06
Merged-chr6-114644732-4	chr6	114644223	114645223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1626.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	7.7557778961602	7.94318363646697	7.52151292001036	7.73106960248289	8.04734140411072	7.42699200550665	0.0187117065212095	0.944810281081357	0.987875414328125
Merged-chr13-9382029-4	chr13	9381536	9382536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	105511.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.31667222219065	5.06636285119409	4.93867377511788	4.97994065237257	4.98451292572018	4.92891526921859	-0.337153793247715	0.372922338671281	0.75683224283317
Merged-chr1-156040846-4	chr1	156040355	156041355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-6.0	NM_001160181	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	6.90841533854093	7.04532626438575	6.87521258258902	6.88792533905962	7.12172506554401	6.96207347849214	0.0771865176794669	0.756095128990333	0.939527320894303
Merged-chr19-6046124-2	chr19	6045640	6046640	+	805.25	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-436.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	8.2617950318408	8.37173264781476	7.86943987514412	8.21706825379575	8.66797101929553	7.7255993871818	0.113929587382684	0.707548198928035	0.923436131070566
Merged-chr7-143626431-2	chr7	143625931	143626931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	1414.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	4.95892169979446	5.36107274696926	5.44552530986206	5.43535674983321	5.34492566894305	5.33052478221798	0.21074272083036	0.563720701128267	0.865992481769395
Merged-chr14-20836200-3	chr14	20835695	20836695	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008873)	promoter-TSS (NM_008873)	-467.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.22073826399899	6.18195441414168	5.69581691038977	6.34055640336576	6.36312565175437	5.78877892922405	0.229629943073176	0.504397339080197	0.837664432515541
Merged-chr14-17756988-4	chr14	17756470	17757470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	96010.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.1642523129555	6.27486701657952	5.85586535466831	6.17945715791844	6.03562354760477	5.99304114964214	-0.0839051452424602	0.781452899499336	0.946217681595203
Merged-chr10-10457210-4	chr10	10456711	10457711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15103.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.25274913181607	7.52568152907329	7.31705034685166	7.45001982771672	7.67894767147365	7.6744267232022	0.33942156246628	0.153961243819434	0.523102321666687
Merged-chr11-46062041-4	chr11	46061545	46062545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	6061.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	4.45094948805947	4.00973177327618	4.12616187644875	4.36830636842973	4.32947813453039	4.50641860640516	0.488301893701584	0.307192973809263	0.703285276522147
Merged-chr17-28207725-4	chr17	28207234	28208234	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027185)	promoter-TSS (NM_027185)	-44.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	5.56655028050641	6.01340329779993	5.47030675226387	4.87568348551368	4.73513781395939	4.8368722645956	-1.83747072861798	1.51074364723676e-06	7.78365061295831e-05
Merged-chr14-16380325-4	chr14	16379832	16380832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	15126.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	4.32905386306325	4.09412667218639	4.92117613137247	4.88444639628223	4.68442291708046	4.98514815225539	0.866734808496602	0.0757526653625382	0.362400263294778
Merged-chr8-110618615-4	chr8	110618155	110619155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	88.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	7.68634211926592	8.12230951717842	7.72243962708603	8.03836804952849	8.10820214845481	7.47973184532482	0.0704719714389245	0.799834554757826	0.952304344924511
Merged-chr8-69082393-2	chr8	69081893	69082893	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	B3A|SINE|B2	-6343.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	3.44362886454945	3.17113621066899	3.2826816058184	3.13686248543358	3.36316845655359	3.40949577380289	0.0112142112683568	0.985808212324333	0.996966634617303
Merged-chr2-152808737-4	chr2	152808274	152809274	+	786.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	RLTR31D_MM|LTR|ERVK	19715.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	6.45575012432952	6.63238163064378	6.32648910942579	6.39898985410943	6.48151888005668	6.03079792337569	-0.248679623409053	0.399901541035228	0.776248940201881
Merged-chr10-81498112-4	chr10	81497564	81498564	+	907.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010102, exon 1 of 1)	3' UTR (NM_010102, exon 1 of 1)	-1701.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	3.94200897089359	3.79353187710506	3.49596259404651	3.82275163709077	3.89353031018081	4.54169957638598	1.07387278553777	0.0775944903897431	0.367597492390671
Merged-chr11-116612658-2	chr11	116612158	116613158	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	MIRb|SINE|MIR	11594.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.63430246433837	3.62715492843714	4.10850206704803	3.79080422872311	3.66593356343132	4.04600788254196	0.11673943351143	0.837051874366993	0.962035641067236
Merged-chr9-21289220-2	chr9	21288720	21289720	+	633.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009878, exon 2 of 2)	exon (NM_009878, exon 2 of 2)	-1251.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	3.29277941624496	3.37058758078399	3.49017807396369	3.30901579610235	3.17331375352854	3.50813717520635	-0.212301711009609	0.729838452759692	0.930635866770147
Merged-chr17-26531757-4	chr17	26531229	26532229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23257.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.92286122440089	7.76435941984965	7.44492862766921	7.48495254216688	7.72095042085903	7.45888139291752	-0.24234443878036	0.33327863225899	0.724200304273483
Merged-chr8-34147171-4	chr8	34146631	34147631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-392.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	7.65981742755779	7.53814924974744	7.39145795034823	7.78567377452592	7.77849991394502	7.45946744477398	0.218499617771541	0.360542271719024	0.74673233090976
Merged-chr15-64178664-1	chr15	64178164	64179164	+	788.333313	f0_balb.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118216.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.41489627638114	3.58416028798896	3.36562126533836	3.30500189743338	3.33106098919525	3.4370796417465	-0.411388946009409	0.490455618463428	0.830053405840466
Merged-chr11-82035455-4	chr11	82034973	82035973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011333)	promoter-TSS (NM_011333)	-104.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	5.66264823299617	5.43216283073369	5.15756468332321	5.62675149237232	5.52913164307857	5.54610112256298	0.22848903345506	0.512547881058505	0.842032105019173
Merged-chr6-37390502-4	chr6	37389998	37390998	+	764.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	51650.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	2.61903663882909	2.70351408640193	2.71708626666042	2.64872383179947	2.56558811910799	2.84968598604569	0.0414426770567627	0.955978398672037	1
Merged-chr17-5769547-2	chr17	5769047	5770047	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29110.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.87089432356953	3.91928034994425	4.01510548669131	3.98685833386068	4.20437075439082	3.98651642766547	0.413217568870383	0.405574841470914	0.780279107725129
Merged-chr1-120256066-4	chr1	120255563	120256563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	9217.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	3.30094799317911	3.32336631573999	3.41208747386711	3.36562182593843	3.36033058085172	3.19603211638957	-0.11452844022903	0.850708135253637	0.964981271430729
Merged-chr8-84975003-4	chr8	84974505	84975505	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011563)	TTS (NM_011563)	3743.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	7.45029912530498	7.50733379099435	7.31193409274245	7.73154006892505	8.16177155855573	7.45978166664593	0.578636465630384	0.0329070554942329	0.221030858376181
Merged-chr10-99211143-4	chr10	99210665	99211665	+	932.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-52066.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.99030509397096	6.84202334555706	6.39924254612696	7.42531901949315	7.28594860787445	6.52168711900429	0.560454310503893	0.0992255439409163	0.420003298020281
Merged-chr16-19973654-4	chr16	19973140	19974140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9409.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.91433915521457	5.10782447145745	5.33206583144564	5.23294241836858	5.47729777244938	5.50850101848255	0.589690945929817	0.106659181345093	0.435916169724877
Merged-chr7-19468505-4	chr7	19468006	19469006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10012.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.3311745797282	6.15681382233637	6.20482945384471	6.88306655786028	6.91677014249632	6.78722191032174	1.01191989655285	0.000110996375229395	0.00309614025815873
Merged-chr10-79097687-4	chr10	79097180	79098180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359717)	promoter-TSS (NM_001359717)	-80.0	NM_001004362	72128.0	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding	5.71039936627968	5.84674958321508	5.46438938220042	5.92890049220112	5.96280880239904	5.59033773626294	0.277057887239147	0.404381096957892	0.779533860086219
Merged-chr11-99188939-1	chr11	99188439	99189439	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-33862.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.62411160697269	6.56966797904828	6.22784933931837	6.57918430982627	7.02312529645469	6.56623919113739	0.40698120239894	0.173113499827298	0.551857854984095
Merged-chr1-106241624-3	chr1	106241131	106242131	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	69762.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.45344582074709	3.0151719047241	3.49720333523835	3.08299653412017	2.93014555541052	3.07074708548609	-1.33833773571398	0.0533063568278107	0.295991930878587
Merged-chr9-65570974-3	chr9	65570552	65571552	+	668.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	B4|SINE|B4	9035.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.0837349480991	5.94687778145824	6.74818829677755	6.16672806710053	6.21052783774726	6.52191486724649	0.00919175985060059	0.978908682913078	0.995160277495735
Merged-chr8-115617021-2	chr8	115616521	115617521	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89873.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.90396530961227	3.37883977028209	3.30412391597923	3.25668178488461	3.09344463821305	3.49260376210296	-1.04709206270623	0.118670726439031	0.460372692762245
Merged-chr8-57463018-4	chr8	57462522	57463522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7099.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	4.87999582927112	5.01029987016575	5.23015735774769	4.79021187218859	4.5791027916234	4.75011379529842	-0.753317394549321	0.0589902904156242	0.314363012994957
Merged-chr9-44335152-4	chr9	44334652	44335652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010436, exon 1 of 1)	exon (NM_010436, exon 1 of 1)	437.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	6.77945157265565	6.75095838770591	6.9628620774768	6.75445178288099	6.64257031327791	6.91336314754922	-0.0962248696800472	0.709047581611315	0.923888590419226
Merged-chr11-51935852-2	chr11	51935352	51936352	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31779.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	4.74341434539051	4.59674720414957	4.53203117480629	4.55873333750614	4.31483061854762	4.63962046960369	-0.319319499782865	0.458825032763018	0.813236440920954
Merged-chr3-65516013-4	chr3	65515508	65516508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12439.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	4.82365085259078	4.39889211967532	4.74534944234108	4.70755170932241	4.496829010086	4.39452604841336	-0.29730935520506	0.502824147214554	0.836691193058519
Merged-chr8-70835077-1	chr8	70834577	70835577	+	558.0	f1_c57bl6.idr	TTS (NM_027560)	TTS (NM_027560)	4643.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	2.8854497632632	3.1262905488933	3.22514719375493	3.09573091285857	2.93451605186617	2.88382114695232	-0.489639837562972	0.481092351447186	0.824933692849553
Merged-chr15-84981722-2	chr15	84981222	84982222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	6249.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.33019268621864	6.43358817663913	6.05630572828608	6.26643424118252	6.61382169497964	6.46849833679069	0.275168548318627	0.347736354709977	0.735721282615637
Merged-chr4-66821976-1	chr4	66821476	66822476	+	662.0	f0_balb.idr	Intergenic	Intergenic	-5575.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.3364895127563	3.35175086969017	3.39009161022398	3.13603477122757	3.34027779283706	3.2354484720448	-0.458155362790422	0.458551735254022	0.813092374952408
Merged-chr2-122150083-3	chr2	122149580	122150580	+	810.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	2393.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.75455345220398	5.79404041405148	5.58824010759226	6.27448588962839	6.20153477442587	6.01987235881201	0.787749353538522	0.0090334822789385	0.0938269683812471
Merged-chr11-85141363-2	chr11	85140863	85141863	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1408.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	5.32892102432566	5.27037110064541	5.53407113866621	5.48539877961869	5.28276728586332	5.36576478802237	0.00885686817912835	0.979425315826719	0.995237545848004
Merged-chr2-25180016-2	chr2	25179516	25180516	+	827.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-742.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	4.07351925799026	3.79833410618696	3.48495250999591	3.52925583518381	3.72668027880413	3.67374079188627	-0.552296199916727	0.34765584431316	0.735700597497696
Merged-chr6-72362521-4	chr6	72362028	72363028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331173)	promoter-TSS (NM_001331173)	-96.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	7.10482500391686	7.43487221008272	7.05013472827783	6.93419314544083	7.41387686265651	7.13417441238436	-0.046550822960675	0.865223507704137	0.968631249633983
Merged-chr2-153199307-4	chr2	153198791	153199791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26150.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	8.30118559485965	8.09613021554974	7.61169860037386	7.89995141919111	8.22536954858415	7.74521267010181	-0.0892943064715538	0.748382591648006	0.936975942448953
Merged-chr1-86466088-4	chr1	86465582	86466582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	39753.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.17865435157004	4.50789835521719	4.14670985074435	4.22019152103128	4.2565219183975	4.21598628788585	-0.174307062176835	0.712072411802427	0.924891945289204
Merged-chr9-70654661-2	chr9	70654161	70655161	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	2513.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	3.84553733179308	4.05681465427403	4.07426211266309	4.04268943675869	4.32324695248736	4.14248393774715	0.547189979782661	0.267498773970116	0.664756383373813
Merged-chr6-120469911-4	chr6	120469366	120470366	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	6669.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.93071838992043	7.18879484638534	7.08698280897763	7.00926811333016	6.96066663235313	7.22845583475923	-0.0139980726907817	0.955461967908949	0.989763164889919
Merged-chr15-77772966-4	chr15	77772481	77773481	+	911.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 25 of 40)	G-rich|Low_complexity|Low_complexity	-15971.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	3.4467677561068	3.78073732570697	3.43061976061073	3.40813935814955	3.3181365441351	3.55733136549823	-0.529055984842559	0.379643296676496	0.76201161008233
Merged-chr11-55097873-4	chr11	55097331	55098331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010299)	promoter-TSS (NM_010299)	-154.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	5.98455071092542	6.02546774077209	6.06654100180561	6.25802496100784	6.24432659247592	6.17054313594879	0.347743862711166	0.214084258643793	0.607286093929455
Merged-chr4-129189794-4	chr4	129189302	129190302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029036)	promoter-TSS (NM_029036)	7.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	7.1815259756338	7.27038360653734	6.67339537254024	7.11922917387548	7.27918901655001	6.86502128801046	0.0422491180183943	0.883414052170577	0.973362870329156
Merged-chr5-100549376-1	chr5	100548876	100549876	+	799.0	f1_c57bl6.idr	Intergenic	Intergenic	22829.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	2.84352819652848	2.73100849070107	3.12339929302081	3.18175959565252	2.9319716254924	3.35667766791433	1.18771048838987	0.100852396200197	0.423513683621661
Merged-chr17-35260176-2	chr17	35259676	35260676	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-2918.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	5.19493487402991	4.53172167959461	5.25360059366447	4.64379681038689	4.45814317265924	4.79470451530751	-0.891762392374941	0.0503190294182786	0.285432220696395
Merged-chr5-117115332-6	chr5	117114858	117115858	+	953.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	635.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	6.66515683508494	6.71744206930282	7.09336027175151	7.02304432803947	6.73829241769743	6.87562610888082	0.0807463415657684	0.767743616423593	0.94269118489175
Merged-chr1-131934737-4	chr1	131934244	131935244	+	889.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	24286.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	5.52181220286897	5.41664383843677	4.861167357858	5.67288273222709	5.95222812579236	5.48383437375456	0.779362407330823	0.0478174385039358	0.277094047150602
Merged-chr6-76513209-4	chr6	76512705	76513705	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-729272.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	3.40450695430821	3.776525392321	3.68070923052906	3.21267741239228	3.16805648198773	3.59960967459278	-1.1186855111683	0.0789599874447301	0.371234186648271
Merged-chr3-96564001-2	chr3	96563475	96564475	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	ID_B1|SINE|B4	2826.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	5.89395733813962	6.1511387693284	6.12238867049023	6.07608744384141	5.8420747474039	6.26271669501173	0.00151354495320429	0.99609068112182	0.998961028701257
Merged-chr2-163100192-2	chr2	163099692	163100692	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	3.7097304553457	3.75642317626327	3.37826165004133	3.37118539527591	3.06673593991887	3.72090586265407	-0.78764523059741	0.24089883063807	0.637899306232139
Merged-chr17-33798578-2	chr17	33798084	33799084	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11939.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	3.52287689699339	3.57166157061868	3.70209255394934	3.41515481425934	3.23577718833737	3.22317538211221	-1.16156690532345	0.0552321597942771	0.30207424425938
Merged-chr5-90414784-4	chr5	90414271	90415271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46099.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	4.18378977365697	4.20216384631973	3.78620032492807	3.96450364427953	3.78878865843002	3.85823395100094	-0.633097303318122	0.227285772237564	0.622402368069924
Merged-chr3-136761767-4	chr3	136761232	136762232	+	750.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	91666.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	2.98005009502029	2.95924512534268	2.83544005363983	3.0967787909797	2.89941164455718	3.09263592336339	0.460750173263273	0.50262242846491	0.836562439638842
Merged-chr15-58747163-2	chr15	58746663	58747663	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76264.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.9281692441284	6.18164084123703	5.94570824342838	6.11811847976213	6.21360067600477	5.98296684199328	0.148818947657582	0.616542180634838	0.888391945757827
Merged-chr4-141514465-4	chr4	141513958	141514958	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	24139.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	5.11198617929218	4.90992602708123	5.0213892460024	6.44592270281574	6.4420741489946	5.93231394736084	2.38738664439956	6.33029137770899e-12	1.07277165978902e-09
Merged-chr2-158046514-4	chr2	158046026	158047026	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027434, intron 3 of 6)	intron (NM_027434, intron 3 of 6)	18029.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	5.24745988358879	5.26071686597453	5.46841976223362	5.36222219084915	5.35521856607254	5.44544953315465	0.127089730591306	0.708515671530866	0.923708659245088
Merged-chr5-127609644-2	chr5	127609190	127610190	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	PB1D10|SINE|Alu	7702.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	6.34914632316575	6.51613246212714	6.5194496860676	6.69145487324957	6.4743380587368	6.45294753551721	0.13489343931194	0.616898871136292	0.888600929084731
Merged-chr15-100494576-2	chr15	100494083	100495083	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153407, intron 1 of 4)	intron (NM_153407, intron 1 of 4)	656.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	3.62486648008367	3.33754467578125	3.61635875120207	3.86804097337172	3.30155923468946	3.78860209761799	0.489145618079023	0.429517961459735	0.795784671795164
Merged-chr10-19078292-4	chr10	19077803	19078803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62893.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.47419209831172	5.62859236028609	5.11087185109654	5.08761891973961	4.88894788176016	4.70604102893687	-1.10903838344763	0.00520144402327799	0.0628341687411317
Merged-chr17-74123185-4	chr17	74122698	74123698	+	925.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75282.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	2.67475087283267	2.63325827137361	2.80181204327038	2.67043270239416	2.5551293572339	2.93212563567473	0.106639422604737	0.88818989469183	0.97401529899353
Merged-chr16-4939566-3	chr16	4939059	4940059	+	911.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	26.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	6.52271402457182	6.7715953379105	6.49539371872391	6.50332621703017	6.62704572189771	6.50041260897417	-0.0954709072782155	0.721925801432945	0.928606209603791
Merged-chr16-3237025-2	chr16	3236701	3237701	+	703.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-355197.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.9730936822743	2.79637782856121	3.03224898597297	2.499954736957	2.54950030228812	3.21123298754157	-0.518270939101116	0.716379872330367	0.926569584146506
Merged-chr9-111055567-2	chr9	111055067	111056067	+	748.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1677.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.11300065482838	3.6555120205161	3.64362246980806	3.83197559290403	3.66428534497749	3.71574119038714	-0.296408208737671	0.600169398099592	0.881490627508743
Merged-chr2-60808459-2	chr2	60807959	60808959	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	72979.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.92728316766026	4.26298955562994	4.15730797579203	4.05813043892778	3.85516503364316	3.77504317176112	-0.652077699856905	0.206490788172859	0.597141275948059
Merged-chr10-39418547-4	chr10	39418039	39419039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48740.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.03850802869933	7.1304089199497	6.79729032450034	7.04873294107732	7.11725545150961	7.10969041424106	0.131616338901027	0.59550208943409	0.879549293510723
Merged-chr11-94653873-4	chr11	94653349	94654349	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177752)	promoter-TSS (NM_177752)	58.0	NM_053161	94064.0	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	6.90759466665982	6.96297948112147	7.03049005533893	6.96395457550125	6.93854174821717	6.67407020249682	-0.140619579345554	0.57637519192373	0.871585692229598
Merged-chr15-81809527-2	chr15	81809027	81810027	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1887.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	4.65721025392579	4.94875028882318	4.91591691785408	4.52552972826302	4.74161561281062	4.76156955121602	-0.378429879007348	0.355953013775832	0.742814824384323
Merged-chr12-35579030-4	chr12	35578535	35579535	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44046.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	2.75751169741787	2.77346727803829	2.72869354935424	2.76735104503635	2.57343764001244	3.0379196431323	0.23760809352589	0.753440124138513	0.938549578325581
Merged-chr9-72082610-3	chr9	72082105	72083105	+	658.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	28596.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	2.38520886519917	2.31628602702571	2.44453990592229	2.53902718689862	2.31100958770019	2.64373797162542	0.737487954851154	0.371396322103234	1
Merged-chr16-10977638-2	chr16	10977138	10978138	+	856.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	15483.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	6.81371712809333	7.19297525179668	7.43862739253591	7.13156182150692	7.20750016845719	7.22983925476917	0.0344854488341515	0.898926629544132	0.976432549466174
Merged-chr14-73390403-4	chr14	73389905	73390905	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-5116.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.88443071024407	4.69121186891753	4.72285836319102	4.62540421895295	4.51105354808527	4.62927545819383	-0.440878726391958	0.279174381251765	0.676713430104492
Merged-chr8-122611537-4	chr8	122611025	122612025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021502)	promoter-TSS (NM_021502)	-38.0	NM_016722	50917.0	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	6.15879986182148	6.50652338176182	6.23959835899961	6.67092057510284	6.56153638486764	6.09873777503821	0.264257906667561	0.393321463062364	0.771515439837752
Merged-chr6-131247424-4	chr6	131246937	131247937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170851)	promoter-TSS (NM_001170851)	-75.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	6.42842492445825	6.70304082548767	6.11191943299113	6.34560206727265	6.77880878067691	6.24144848136875	0.0670562572977252	0.836591230826809	0.962001762335242
Merged-chr7-80294335-4	chr7	80293844	80294844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285998)	promoter-TSS (NM_001285998)	-107.0	NM_145150	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	5.07814348589621	4.86648475599826	5.01446563768158	5.18081911428564	5.06886348006832	5.0440626192328	0.239497641984202	0.516325748766237	0.844128937066923
Merged-chr12-4917313-4	chr12	4916817	4917817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099628)	promoter-TSS (NM_001099628)	-36.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	7.59207806840995	7.81022568528017	7.61471794375374	7.68877055850398	7.29816976128902	7.49582151741775	-0.257681576077722	0.287897437406783	0.685252111085562
Merged-chr2-78868016-1	chr2	78867516	78868516	+	661.0	f0_balb.idr	Intergenic	Intergenic	-1031.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.63792363297014	4.55562951993679	4.28122538382279	4.36252962347689	4.15882348654276	4.30335532038214	-0.614058528262209	0.177303417571516	0.558236066644875
Merged-chr7-27593227-2	chr7	27592727	27593727	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1675.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	2.46194607685778	2.27634183766608	2.52744277746864	2.74902726989102	2.41544649557599	2.78786579442636	1.38863745238925	0.0993153979314447	1
Merged-chr19-8997740-3	chr19	8997232	8998232	+	906.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	8448.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	2.61380342610574	2.73332259674749	2.77982447375896	2.53998254536135	2.30806687982641	2.33682256782539	-1.97833316448413	0.0231079577704143	1
Merged-chr11-75461465-4	chr11	75460986	75461986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-53.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	8.20189939278692	8.1226388924689	7.80434688962934	7.99476437279751	8.30486019128918	7.77187241546487	-0.0119321205290547	0.962771022926757	0.990972235433849
Merged-chr12-84222224-2	chr12	84221724	84222724	+	707.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-3343.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.83238123921839	5.72183098658614	4.85951430537905	5.46143862281137	5.39047624506199	4.6937232265989	-0.608951552081349	0.461918625705331	0.815107818354545
Merged-chr4-132639004-4	chr4	132638521	132639521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211357)	promoter-TSS (NM_211357)	-25.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.27126390361171	6.31427740751941	6.63443161076923	6.53522851201163	6.48540708055541	6.32378592827722	0.0814872343348656	0.772696650188024	0.943848608021176
Merged-chr2-155541261-4	chr2	155540739	155541739	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019811, intron 2 of 17)	MIRc|SINE|MIR	15691.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	6.09726804023624	6.11917828828007	6.07440825711553	6.28101125316804	6.06719115382232	5.92273126753914	0.00971676569165217	0.973541806749381	0.994039095662068
Merged-chr2-59439276-2	chr2	59438776	59439776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45377.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	6.00735766533554	6.07307743454563	5.57221931023149	5.70110552391087	5.57404851170804	5.4164712305947	-0.617815037139637	0.0675139953809234	0.339849033735988
Merged-chr16-94629115-2	chr16	94628615	94629615	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	17696.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.25617411325268	4.11155767400896	4.18305096930004	4.27099627955076	4.3083192816261	4.29694830456347	0.294222719895783	0.51870395178276	0.84542522050122
Merged-chr6-125161002-2	chr6	125160502	125161502	+	776.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008084)	TTS (NM_008084)	4771.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	3.44527760197958	3.27122231678065	3.7089053961789	3.3759432713851	3.25962697115811	3.6322161162898	-0.207493236326251	0.738713517138564	0.934076171770342
Merged-chr7-25120609-4	chr7	25120099	25121099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163555, intron 4 of 13)	intron (NM_001163555, intron 4 of 13)	11861.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	6.59340215760402	5.87547639186636	6.55973164331948	6.52202333031399	6.37401723044835	6.92353440740816	0.386412286724734	0.261458537415881	0.659215865138495
Merged-chr7-81209209-3	chr7	81208751	81209751	+	810.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4553.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.21359078413101	3.19791137405518	3.06044142067562	3.05459017604044	2.67194462432852	2.94952030501797	-1.24734322001519	0.0881058194715041	0.393891523027343
Merged-chr1-64534906-2	chr1	64534406	64535406	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	2102.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.39614849383291	4.49516613348716	4.47300155973948	4.70625643427054	4.66140767674319	4.10426312505676	0.185557660255576	0.694047664017835	0.919144532112777
Merged-chr17-29498782-2	chr17	29498282	29499282	+	808.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7737.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.21658757359506	3.68577400426747	4.29328917688314	4.50524299313825	3.84182245193798	4.27441406043849	0.39768672801684	0.483209747302859	0.826078991074463
Merged-chr4-126137978-3	chr4	126137493	126138493	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 10 of 10)	intron (NM_028800, intron 10 of 10)	-10010.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	2.5755822543666	2.75968019547988	3.00256330297974	2.69200328783183	2.32246400632252	2.72644001243178	-1.06833933886484	0.212240317479675	0.604652731771453
Merged-chr13-55443994-2	chr13	55443494	55444494	+	628.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	5.03086363013503	4.82701694792847	5.31173296546251	5.14253080771058	5.27840347222701	5.43141089580005	0.466323884244817	0.219007694423696	0.613128894826908
Merged-chr8-117517965-2	chr8	117517465	117518465	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	19690.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.53798518891467	2.36652334973827	2.61975358371549	2.39740500771396	2.50092468675311	2.5699075537799	-0.112340763995715	0.88855870528421	1
Merged-chr1-34856560-2	chr1	34856060	34857060	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	RLTR28|LTR|ERVL	6571.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	5.75144282911959	5.429922226338	5.806751509214	5.72082524562574	6.0783219855326	5.81867013422116	0.40363245569672	0.223825271596502	0.618565816341582
Merged-chr11-119227673-4	chr11	119227167	119228167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175430)	promoter-TSS (NM_175430)	832.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	6.33244956364812	6.16973607393691	5.86370991869722	5.66749967439261	5.63125127998734	5.65719194625573	-0.876880285895343	0.00526155019002328	0.0634221451849134
Merged-chr13-52258636-4	chr13	52258149	52259149	+	858.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161908.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.79353383355415	3.04785008230099	3.14682590132744	3.08167010998657	2.95658280046445	3.32604639273276	0.549360995678772	0.432224851239064	0.797270167804312
Merged-chr8-69007227-4	chr8	69006737	69007737	+	853.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81499.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.75751106881709	6.27049102671178	6.51095741381208	7.23522647343446	7.09649508762185	6.88213530125441	0.859286013168701	0.00235745655895598	0.0350096814844921
Merged-chr16-30064171-4	chr16	30063652	30064652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1205.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	8.43498968987204	8.4076742874011	7.99285722393096	8.15668005192076	8.26847021497987	8.07128900019688	-0.18194689405772	0.435963332618103	0.799430009957291
Merged-chr10-8848748-1	chr10	8848248	8849248	+	600.0	f1_balb.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37322.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.60002734308721	6.15214470470244	6.15819435440857	6.10937622104239	6.22003555438005	5.58926098188965	-0.522466999854152	0.12958976592426	0.481590007708854
Merged-chr6-47621761-2	chr6	47621261	47622261	+	595.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26731.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	3.59697751794635	3.83938226819215	3.94922841977252	3.84556294566567	3.93398739393601	3.87234507887989	0.281736347349481	0.594112045454477	0.87882660002802
Merged-chr3-122924318-4	chr3	122923829	122924829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046036)	promoter-TSS (NR_046036)	-68.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	5.37371196786499	5.19596648350011	5.14169157083184	5.49690859099945	5.46438771651565	5.30798336717341	0.363551329037566	0.292968545413101	0.690053425164737
Merged-chr12-106016829-3	chr12	106016325	106017325	+	969.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	6562.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	4.81436423597985	4.91478400356242	4.66607239068185	5.19077549174576	4.67539986251175	4.81523853807341	0.228877464785401	0.584201407985321	0.874536390969391
Merged-chr2-59336379-2	chr2	59335879	59336879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	50303.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.37906285544735	4.38321940289342	4.38510371642181	4.42176385149407	4.01153176468422	4.45205997971013	-0.217599150246615	0.643627173809389	0.89991566161065
Merged-chr2-127272750-2	chr2	127272250	127273250	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139308, intron 1 of 7)	BC1_Mm|scRNA|scRNA	2521.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	3.91809979716428	3.69099659277924	3.48721106640442	3.57257280734427	3.90039744124141	3.72906129559577	0.0924582784497695	0.872868070807429	0.970324308510602
Merged-chr10-20717653-2	chr10	20717153	20718153	+	812.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	7425.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.90184522076725	3.67871294932936	4.01387129064143	4.06930887879436	3.82560066527927	4.08200413000992	0.386470527201898	0.459287591049633	0.813547671656368
Merged-chr11-93998208-2	chr11	93997726	93998726	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	2135.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.21364117604531	4.10990679466473	4.4423899820316	4.27252904131854	3.92891807004736	4.4686822975832	-0.0654311084627044	0.895824157210006	0.975665889379756
Merged-chr10-34282101-4	chr10	34281570	34282570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-120.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	8.71998947119156	8.76320911796318	8.37656086415071	8.4946079216824	8.63495236659066	8.26863856872709	-0.216165624077684	0.352626727349682	0.740194084833795
Merged-chr1-120073099-4	chr1	120072586	120073586	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	694.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	7.41528710259919	7.78065235127205	7.33953025171951	8.22733410014069	8.41653929210826	7.767544073906	0.912951460916993	0.000927924294239305	0.0169808388025013
Merged-chr10-111972035-2	chr10	111971535	111972535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-660.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	3.03988017810627	3.28362699058065	3.1540549984214	3.01285309242485	3.06924814349489	3.28152989672087	-0.187884824459773	0.775273658285196	0.944594834759211
Merged-chr12-4196054-2	chr12	4195554	4196554	+	575.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 6 of 21)	RMER10A|LTR|ERVL	37911.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.44690303530779	5.01707537413113	5.73593837213313	4.68114841329023	4.8725844735334	5.25168750733338	-0.977763440338733	0.022078014444359	0.172446017636931
Merged-chr4-101716825-4	chr4	101716327	101717327	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122899)	promoter-TSS (NM_001122899)	-580.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	2.48049831637903	2.8341399448039	2.75443380748672	2.23387621148974	2.19279192531914	2.58491314197286	-2.39421060161789	0.01475054914157	1
Merged-chr11-22851535-1	chr11	22851035	22852035	+	661.0	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	8200.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.86581475318386	4.30002279469025	4.45625580436312	4.54349781448033	4.49982703645967	4.26083385587173	0.57688018563291	0.245601441032118	0.642645689440908
Merged-chr3-131862157-2	chr3	131861632	131862632	+	872.5	f0_c57.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-223160.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.74759251762107	3.92468278979998	3.75104247251373	4.31840436311276	4.24917176848595	4.51747924695025	1.58170771501215	0.00179432199201095	0.0284168146766744
Merged-chr1-176074791-3	chr1	176074265	176075265	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	139177.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	5.16666905726687	5.40458899575698	4.88839448749819	5.29334435338124	5.45588279051248	5.1098812435543	0.240888383436775	0.531012543219436	0.851371761844442
Merged-chr17-10856067-4	chr17	10855572	10856572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	15713.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	4.97984911748146	4.59486323522779	4.86671006427059	4.92669134742186	4.70711115929899	5.03618738776813	0.147523062666212	0.71901410458106	0.927633547003347
Merged-chr6-82044665-3	chr6	82044156	82045156	+	997.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3028.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	5.63766883213617	5.75051028265355	5.08688856364105	3.96278557805977	3.89273028122356	4.12858504977337	-4.02391422894198	1.64580465291612e-14	4.21366503261059e-12
Merged-chr8-70375376-4	chr8	70374876	70375876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016685, intron 4 of 18)	CpG-14087	1828.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	5.53570210519518	5.28101886835745	5.5152309136245	5.20145636456408	4.99453383247886	4.92656082316939	-0.803473412837411	0.0269697464481902	0.19557151161254
Merged-chr4-144971220-4	chr4	144970737	144971737	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78100.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.58878122692725	4.38538877943873	4.31480748116521	4.51060128153947	3.97080028141003	4.85071061660169	0.12523922582185	0.809164755823939	0.954721853010197
Merged-chr7-90210247-2	chr7	90209747	90210747	+	928.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146194)	TTS (NM_146194)	55185.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	2.78547872453762	2.64707669618735	2.88140479906595	2.88228116272464	2.81961895109154	2.83325250609839	0.383272094410366	0.593034504836733	0.878398361724896
Merged-chr15-39232894-3	chr15	39232395	39233395	+	867.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256383, intron 1 of 25)	MERV1_I-int|LTR|ERV1	34609.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.83812511290718	4.34136785246878	3.68793104959259	3.69139414551743	3.72372981922846	3.70427028174185	-0.911464060195474	0.111466952968295	0.445975007096497
Merged-chr13-102906300-8	chr13	102905800	102906800	+	971.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	146045.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	4.89828519699105	4.99416711076731	4.7432040531276	5.31307522844874	5.12046125256004	4.76902751185268	0.440784160072175	0.272761544201343	0.669951714189667
Merged-chr11-79528173-4	chr11	79527675	79528675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033711, exon 2 of 2)	5' UTR (NM_001033711, exon 2 of 2)	2434.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	8.03010558917736	8.11114083199832	7.60280508317457	7.75413647493098	8.32546748496186	7.89357561763073	0.116031614592985	0.671949858164644	0.910716267296983
Merged-chr1-131481623-4	chr1	131481137	131482137	+	828.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	45724.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.46878153675011	4.17942996723186	4.37679248575558	4.39711514254051	4.32002404504292	4.60637839578495	0.238522118650998	0.598786628384547	0.880808927175713
Merged-chr6-22474270-4	chr6	22473771	22474771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118190.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.17067987509545	5.23291920311822	5.18667999183777	5.00037194342279	4.98566735885385	5.42916350167776	-0.117603814251574	0.753384794666229	0.938549578325581
Merged-chr18-35562152-4	chr18	35561646	35562646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010771)	promoter-TSS (NM_010771)	-12.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	8.16433450136362	8.38246892001879	8.02906146366315	7.90985562019893	7.93675659117166	8.04143243662395	-0.344838850162477	0.121212109798118	0.465641316357903
Merged-chr7-13009261-4	chr7	13008745	13009745	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024699, intron 1 of 2)	intron (NM_001024699, intron 1 of 2)	607.0	NM_001024699	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	5.01357483243622	4.99207801822657	5.53987289866628	5.22268119605848	5.01532598620267	5.41860110131053	0.0528389006184808	0.894724623229057	0.975576532925631
Merged-chr17-15705596-4	chr17	15705068	15706068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	601.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	8.21841995345665	8.21336519425794	8.04986690202057	8.12595746071205	8.03196162066815	8.22736806995099	-0.0554954512485397	0.79358329715513	0.950517906861725
Merged-chr8-106581662-4	chr8	106581162	106582162	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5481.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	4.2424646615844	4.68156628808297	4.74943002541326	5.00252014059275	4.75430597786317	5.27192886685322	1.01108501648151	0.0239462668095475	0.181908061985867
Merged-chr19-6278302-4	chr19	6277796	6278796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	1400.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	7.66631401309181	7.32837988395204	7.22548465835299	7.15100086438932	7.26504222187398	7.28298618428636	-0.287171276575079	0.253532480725636	0.650896916687683
Merged-chr11-4973441-3	chr11	4972949	4973949	+	844.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-13375.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	2.97040177172124	3.05351300412352	2.91490849546353	2.57671069448776	2.55099895281045	2.6069662817887	-2.38072975432237	0.003223482911705	0.0445399478773081
Merged-chr5-139345279-4	chr5	139344776	139345776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197980)	promoter-TSS (NM_197980)	-110.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	5.0157400720561	4.8149592873476	5.25727663002504	5.04651636438151	5.10637318317233	5.19733191424025	0.181058289797883	0.633644599671259	0.896059441151508
Merged-chr17-57399036-3	chr17	57398525	57399525	+	702.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	L1Md_F2|LINE|L1	40339.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	2.6059080268897	2.72409191988527	2.67643126844027	2.71636922142296	2.66875262243653	2.87004019667587	0.431001913347624	0.559773544478754	1
Merged-chr17-70973733-2	chr17	70973230	70974230	+	765.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023402)	TTS (NM_023402)	16786.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.55764081391715	4.61365439555584	4.60843213866855	4.62966164353657	4.90613950181522	4.7927446122608	0.453590787027626	0.265233255079723	0.663007441003202
Merged-chr19-32954448-4	chr19	32953942	32954942	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196865.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.47350905401015	4.52290987204966	4.45336891053207	4.71433645400665	4.74752606616877	4.97898644654049	0.774164598964725	0.0611658987454076	0.32075957035406
Merged-chr11-89002485-6	chr11	89002036	89003036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3133.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.56705142579098	7.75769270760183	7.54169139809805	7.57866977520121	8.03191817554074	7.58861628840512	0.18974177167823	0.452555363198981	0.809456767794566
Merged-chr2-122029022-4	chr2	122028585	122029585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256055, intron 2 of 7)	CpG-8471	502.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	7.63008976617145	7.67714630747884	7.9261831448653	7.82707041398641	7.74164660372439	7.81899274480086	0.0719402604054458	0.748912522504141	0.93711275444937
Merged-chr19-57356452-3	chr19	57356021	57357021	+	855.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	B3|SINE|B2	4378.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	4.22720915741394	4.51022820881819	4.66361180247536	4.43900147271623	4.26612911355685	4.3696597323308	-0.29724026116742	0.514987915375336	0.843343261548699
Merged-chr1-93818353-4	chr1	93817850	93818850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-6890.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	4.5923641571167	5.12283248803533	5.24169251128015	5.09850092306811	4.9632089638461	5.24432327116214	0.193285237262004	0.641993790705231	0.899271200656464
Merged-chr5-134229652-4	chr5	134229217	134230217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	-92.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	7.20175554385825	7.06669123847888	7.25286089394226	7.37131531505872	7.3649468680574	6.94677738268896	0.118743078817819	0.642359661138501	0.899398873915991
Merged-chr6-134830857-2	chr6	134830375	134831375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177687, intron 1 of 4)	intron (NM_177687, intron 1 of 4)	676.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	6.21627187897708	6.23109491050143	6.23086560166321	6.5959609741666	6.80918686639117	6.62539922269494	0.745777961605079	0.00513021751340489	0.0622720844428
Merged-chr1-106163464-3	chr1	106162958	106163958	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040630, intron 2 of 2)	intron (NR_040630, intron 2 of 2)	8066.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	2.79406413636516	2.66432226253544	2.70493769981364	2.5821356156584	2.4783333553213	2.38767348731226	-1.41992563897348	0.0823925114968246	1
Merged-chr4-150914560-4	chr4	150914081	150915081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4660.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	8.50908064858148	8.73431316809062	8.43429973240688	8.60341232081455	8.73106311626049	8.25559752967167	-0.023290124581171	0.921188462795847	0.982526400261012
Merged-chr14-55713600-4	chr14	55713080	55714080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161715)	promoter-TSS (NM_001161715)	-88.0	NM_001161715	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	4.31661310716378	4.53083601569945	4.95989223878133	4.84547813512783	4.51772227177299	4.81915687170058	0.263163614342404	0.564891147220966	0.866552670637515
Merged-chr12-116054548-4	chr12	116054052	116055052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	6828.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	5.87142080767134	6.16089357112982	6.10839965979135	5.86893837519358	5.88736918125565	6.26691421276685	-0.0721892011630786	0.817884740593316	0.956835450074313
Merged-chr7-4460710-1	chr7	4460210	4461210	+	557.0	f0_c57.idr	Intergenic	Intergenic	-4025.0	NM_026146	67425.0	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	3.17383681180802	3.13420342664019	3.36160164013443	4.45796181517294	4.48550689969149	4.57731124768238	6.08693071198883	6.56499667349305e-09	6.21456476914687e-07
Merged-chr11-114683949-4	chr11	114683460	114684460	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	ORR1B2|LTR|ERVL-MaLR	8492.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.99765928100007	6.665516078879	6.84524549069167	7.12274379296647	7.33496203799058	6.82737213209649	0.426083964032731	0.121151626793608	0.465517643142118
Merged-chr2-27721638-2	chr2	27721138	27722138	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	11055.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.86490461651639	5.75083784694925	6.08950212866968	5.68781112271861	5.81477390231645	5.64918842772627	-0.311800730205331	0.322849133305037	0.71622978868066
Merged-chr13-60672596-2	chr13	60672086	60673086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70375.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	8.1913520343069	8.33685326446718	8.04131748240931	8.00623997843356	8.46276929981682	7.94370383025369	-0.0435060176130847	0.862247025637197	0.967996224966109
Merged-chr4-53124215-2	chr4	53123715	53124715	+	992.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	35680.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.90324545325159	7.07879909802341	6.85808386048816	6.85840985183603	7.10843212705807	6.49194016384164	-0.145161343890051	0.610023675446759	0.885428451824695
Merged-chr17-35752785-4	chr17	35752284	35753284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19666.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.22475944928149	4.6289848561684	5.01596898548492	5.85290011177011	5.70036723245818	5.45321404720858	1.3879972774375	0.000391408385847414	0.00864110081443132
Merged-chr12-30584425-4	chr12	30583970	30584970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172049)	promoter-TSS (NM_172049)	27.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	5.56839835489054	5.92887818431522	6.07604647754486	5.74553079872655	5.77242521788549	5.84533416561161	-0.144509243369027	0.657057104229271	0.904749338441592
Merged-chr11-89005203-2	chr11	89004703	89005703	+	802.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	ID_B1|SINE|B4	5800.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.99864933484042	4.72982391040027	4.7850467893485	4.7106560607409	4.59531276947579	4.85055591642638	-0.303064608207125	0.453788626452146	0.809979841654596
Merged-chr2-91091586-4	chr2	91091044	91092044	+	801.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5134.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	5.37236684518308	5.29902079982319	5.41203988533748	5.46562137605878	5.57030475212202	5.35229981365223	0.224714648983364	0.501863167789654	0.836050101414302
Merged-chr11-21036371-4	chr11	21035888	21036888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54936.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.84971341839732	4.57797546212752	4.02614689112033	4.71196964508819	4.47751602657155	4.71493221102578	0.236149801831194	0.641151964684363	0.898796628436156
Merged-chr6-148354658-4	chr6	148354174	148355174	+	917.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003634)	promoter-TSS (NR_003634)	18.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	3.92894625941214	4.10106560443632	3.92926408542523	4.1737011313388	4.34305854226583	4.05113755080164	0.601355839217724	0.220941989924487	0.61561513090473
Merged-chr19-41380789-5	chr19	41380241	41381241	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	4329.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.74244321085914	6.71119043440457	6.92093275940083	7.16344919082506	7.13665063051159	6.95117413775459	0.467108521537944	0.0600645245212531	0.317265732420079
Merged-chr1-92975850-2	chr1	92975350	92976350	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	503.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.41683683342453	4.33189423093982	4.6408214352107	4.70367781882448	4.64018678630673	4.54570517180022	0.431454154703448	0.311796078751075	0.706723622367304
Merged-chr1-55030013-1	chr1	55029513	55030513	+	673.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2535.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	5.34406798666695	5.45711729116049	5.59836841967569	5.01760777290578	5.19277290592281	5.50098124430138	-0.439693602950705	0.224258799365839	0.6190426237005
Merged-chr17-6601680-4	chr17	6601189	6602189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166627)	promoter-TSS (NM_001166627)	18.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	6.47586372956322	7.00735896096288	6.85826896672847	6.07089168617169	6.47128580418192	6.25636275310534	-0.826648803493651	0.00690322134179738	0.0773263668410175
Merged-chr12-85525202-2	chr12	85524702	85525702	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	51312.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.09679695989339	5.75426382761317	6.01070076888132	5.53463354264059	5.12679179916929	5.29799919114826	-1.17967786537289	0.00061783599769935	0.012393659039674
Merged-chr4-101722358-2	chr4	101721858	101722858	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 1 of 18)	URR1A|DNA|hAT-Charlie	4951.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	4.56969024292533	4.76276976107548	4.67965362977752	4.50546245249469	4.79492844351385	4.70634084316113	0.0120496111319828	0.976828551579813	0.994769134402338
Merged-chr2-145739159-2	chr2	145738659	145739659	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	URR1B|DNA|hAT-Charlie	37964.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	4.36383458838546	3.85937923316731	4.02120628957102	3.91363392372341	3.81292553185499	3.6651414614359	-0.902126967812128	0.0978625238817645	0.417180433790351
Merged-chr17-48331064-3	chr17	48330563	48331563	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14901.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	5.03259829256945	4.92660753861845	5.04738951961296	4.81422518245174	4.73072114898754	4.66193519275238	-0.582965440316291	0.130941781130865	0.483616828093559
Merged-chr11-72302186-2	chr11	72301686	72302686	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291153, intron 1 of 3)	intron (NM_001291153, intron 1 of 3)	557.0	NM_001037713	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	6.30626525370053	6.07724032569391	5.7699569852219	6.23738091082114	6.52874547511019	6.24303117085961	0.448814619951068	0.153084329323548	0.521807417736012
Merged-chr15-102625353-6	chr15	102624826	102625826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310070, exon 1 of 12)	5' UTR (NM_001310070, exon 1 of 12)	138.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	7.51541814833164	7.85849168341794	7.56860281471614	7.60480454506441	7.86628188103772	7.26220540392404	-0.0689630035875825	0.797460243211885	0.951799370596145
Merged-chr5-43771705-1	chr5	43771205	43772205	+	581.0	f0_balb.idr	intron (NM_178729, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	10444.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	3.68393684624665	3.91844298815079	3.74603905777468	4.00206603241269	3.78630943268677	3.86814951571032	0.307414773558609	0.560167619934387	0.86517480267848
Merged-chr3-105704675-4	chr3	105704226	105705226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	127.0	NM_175398	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	2.6886291398743	2.58399692395506	2.80180979975724	2.61790390853139	2.61818973279202	2.56460563846664	-0.493909917626329	0.515484704671311	1
Merged-chr6-39778677-4	chr6	39778189	39779189	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32247.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	6.52688338794656	6.76276642434669	6.62715394049312	6.1655412151532	6.70890643115498	6.82299906087349	-0.0767439975653598	0.80027495457506	0.952434057632842
Merged-chr5-100798655-4	chr5	100798137	100799137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081107)	promoter-TSS (NM_001081107)	-37.0	NM_001081107	191578.0	Mm.21469	NM_180984	ENSMUSG00000035266	Helq	AU021725|D430018E21Rik|Hel308	helicase, POLQ-like	protein-coding	4.39220846289908	4.43952319333275	4.66427978331389	4.67986736094845	4.36271633276188	4.26033449814553	-0.11629857918839	0.7976477802029	0.951799370596145
Merged-chr11-9335879-2	chr11	9335379	9336379	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143937.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.77882052337127	5.6779635737354	5.4466847702614	5.80828475581059	6.17053440461286	5.79929466347522	0.533128239829516	0.107053017284301	0.436650365793733
Merged-chr3-144605973-4	chr3	144605460	144606460	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	35533.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	2.68253045727454	2.79728672097879	2.90692271331552	2.6659607412332	2.56633718259488	2.97875207758103	-0.278081238080196	0.714645185873778	0.92601294778158
Merged-chr18-39416597-3	chr18	39416089	39417089	+	978.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70656.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.12891059086646	4.96478384565567	4.93305616764216	5.11042824842282	4.85164796890855	5.17048117469295	0.0546619740404494	0.885818100484193	0.973636976161493
Merged-chr13-94322646-4	chr13	94322126	94323126	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	36297.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	3.31841408497914	3.37502273002394	3.28841794575976	3.22003304477742	3.16638550858427	3.06203299000205	-0.735814415248664	0.244544864656591	0.641966459162426
Merged-chr17-48267765-4	chr17	48267262	48268262	+	766.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	3467.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.26954451348956	5.4139035759124	5.65219362608886	5.41438405382925	5.40144746344829	5.87854050153186	0.240216153851887	0.506608546937831	0.838499472353014
Merged-chr10-99261119-4	chr10	99260642	99261642	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.63168872721228	7.32265497612911	6.8763229938456	6.99749242202302	7.44953751484641	6.77918472283753	0.203282342447926	0.530082442989856	0.851070276054813
Merged-chr16-94648125-4	chr16	94647623	94648623	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	36704.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.37846739187712	3.37196954969912	3.5671831114812	3.45447002913959	3.3445573577194	3.24925645301686	-0.31597455372967	0.599630184965003	0.881122597050421
Merged-chr14-9555555-4	chr14	9555062	9556062	+	771.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 9 of 9)	intron (NM_001360141, intron 9 of 9)	-328533.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.05323333035897	2.94533179413291	2.91554540120017	2.9892786569953	2.96252114264255	3.10705358644341	0.196363164489509	0.770326954348517	0.943392092118189
Merged-chr2-116895337-2	chr2	116894837	116895837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4815.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	2.93236246280821	2.34489239046511	2.56774551289853	2.72121625508753	2.62959806501285	2.77169773831615	0.343659284474167	0.689476365610103	1
Merged-chr11-44523954-4	chr11	44523464	44524464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	4587.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.04998083188398	5.70479392639573	5.70298330759596	6.33788142024333	6.52462342637386	6.38307543797574	0.989045103515657	0.00106708809682502	0.0189439441776438
Merged-chr12-52602514-2	chr12	52601949	52602949	+	932.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-127.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	4.10452279248272	3.87658567952573	3.84120134125426	4.09153859159747	3.96189097863556	3.91201595756967	0.123076621257775	0.808441632878113	0.954683711776353
Merged-chr19-46758717-1	chr19	46758217	46759217	+	554.0	f1_balb.idr	Intergenic	Intergenic	-2892.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	4.5070699769182	4.94049822733184	4.83795726006899	3.89654824419427	3.75509190672032	4.17781710641876	-2.30829482293296	4.88518428180823e-06	0.000217256233950133
Merged-chr19-15999487-3	chr19	15998993	15999993	+	772.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	L1_Rod|LINE|L1	14418.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.17963663686579	3.77171059381676	3.3191061649807	3.76668151533587	3.78171557813628	3.68176288504492	0.987599674345999	0.126724653671119	0.475668700234857
Merged-chr6-8691426-4	chr6	8690941	8691941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	67017.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	5.28463814586179	5.32806498654123	5.22124709848083	4.87133933472247	5.0134355335533	5.31554943784879	-0.43803499467563	0.235776386341792	0.632125090802053
Merged-chr15-96599080-3	chr15	96598579	96599579	+	874.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	42883.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.21191396921566	3.35880538502103	3.29391382390061	3.26498544556546	3.14684953197663	3.19262677294414	-0.371018160479265	0.550876589728219	0.860843602045291
Merged-chr17-27856452-4	chr17	27855930	27856930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080769)	promoter-TSS (NM_001080769)	-77.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	7.23921427322168	7.31121772701676	6.98650991567857	7.25430315124844	7.4825612150126	7.09965661247979	0.154525727319061	0.546783165350875	0.85898091530532
Merged-chr2-61592106-2	chr2	61591606	61592606	+	667.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-991.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	4.06522950382186	3.87367735038015	4.1597726824839	4.1636785409561	4.13028427336925	4.03984420272061	0.242432007476463	0.619224143823935	0.889717023696741
Merged-chr11-114680463-4	chr11	114679977	114680977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5009.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	8.10930628001445	8.18868872732614	7.87351313168903	7.96104477100847	8.19011519788254	7.46969197009173	-0.211206900643045	0.435599174201131	0.799182768216606
Merged-chr5-124533283-2	chr5	124532783	124533783	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1892.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	3.94622061835284	3.82528333643934	3.93947578753583	3.92706440743852	3.88439896009343	4.23389240408062	0.337657501117446	0.508435194327941	0.839818423824339
Merged-chr4-154911393-4	chr4	154910907	154911907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12364.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	7.34048005760189	7.58672859409738	7.00804535148876	7.62550928425063	7.94858485488747	7.17758232812793	0.424756338100876	0.161852196770399	0.534993746826812
Merged-chr6-48086131-4	chr6	48085608	48086608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362062, intron 1 of 5)	CpG	485.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	6.7654689035602	6.1245806364671	6.36594797012105	6.90620494416417	5.88716169282321	6.57012858305972	0.117775969103112	0.755939621119503	0.939495792549816
Merged-chr15-27215920-4	chr15	27215408	27216408	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250769.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	2.88023918042917	2.91792875705534	2.76230491301342	2.90382419884339	2.90451457220301	2.96023732979204	0.305055599997341	0.661807801938626	0.906495637422278
Merged-chr12-87275088-4	chr12	87274585	87275585	+	796.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8357.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	3.79062024721733	3.82215265707575	4.18764895219464	3.93623274120671	3.53828717005367	4.25408732017453	-0.0137994228810459	0.981040146469031	0.995662533937443
Merged-chr7-142462746-4	chr7	142462270	142463270	+	917.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136071, intron 1 of 10)	intron (NM_001136071, intron 1 of 10)	1958.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	2.40390851380484	2.40691766274905	2.57061907973438	2.55314256830366	2.365788419329	2.76440606330652	0.626524414336616	0.441677713067959	1
Merged-chr4-63765243-4	chr4	63764724	63765724	+	965.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20111.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	2.90459783213861	2.95175155143655	2.92251074895454	3.15743289809406	2.86777773297802	3.22493313796366	0.743359221899319	0.282869408501703	0.68075273348424
Merged-chr19-5723043-4	chr19	5722546	5723546	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	3271.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	4.93226956976828	5.04640334072456	5.47735308813445	4.59331140730983	4.69054197314087	4.91113299726981	-0.943019119788055	0.0231331827594261	0.177864732960748
Merged-chr10-20768485-2	chr10	20767997	20768997	+	763.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43419.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	2.91161766291594	3.17618519395615	3.16950757901757	3.23997680269768	3.10656032814043	3.35183491546298	0.604982440832888	0.359475073507071	0.745710700714925
Merged-chr8-79501425-4	chr8	79500914	79501914	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101946.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.50830021788247	4.38135342051685	4.61718882466963	4.40026993328418	4.25727234358446	4.21489622726892	-0.535301642945356	0.230319125729431	0.626192360633515
Merged-chr7-107600113-2	chr7	107599613	107600613	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	5062.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.74752350753108	4.0408955727891	3.64389241302429	3.86434812752366	3.66468087608417	3.65984145030454	-0.312341672732472	0.573452649454188	0.870156136738611
Merged-chr4-135316298-2	chr4	135315798	135316798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	36916.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	4.61544231232591	4.36642026326745	4.44813198261456	4.15960696666394	4.20606239895313	4.4308949276644	-0.574324174179494	0.205357252729165	0.596047563330878
Merged-chr4-130915945-2	chr4	130915445	130916445	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2611.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.90662524440213	7.0164069908975	7.11254083034848	6.99647911562539	7.38461622327331	7.20659056590893	0.30234904797017	0.233661771141359	0.629920965070533
Merged-chr2-11598457-4	chr2	11597944	11598944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	ID_B1|SINE|B4	4755.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	6.47987068927281	6.81117148082999	6.56567824750356	6.84363885283845	7.062122492569	6.69264204690648	0.399028266347821	0.14732366711416	0.512222450828807
Merged-chr15-53342975-2	chr15	53342475	53343475	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	3208.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.75373982553115	5.32235186532393	5.23873334732224	5.50532030564476	5.34693604742003	5.12623792417133	-0.244899547462147	0.51369601022877	0.842720325291605
Merged-chr7-126584003-2	chr7	126583503	126584503	+	953.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-767.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	7.9431463491408	8.40757247699648	7.98419406339662	8.05172069435496	8.48993977895981	7.85404693271216	0.0492583407435968	0.858229561886026	0.966858173874259
Merged-chr1-165134015-4	chr1	165133520	165134520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	26753.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	2.85429813637459	2.7768282803622	2.76432002438085	2.75523760820796	2.72279136029083	3.01546982040203	0.156919161252753	0.828248537150659	0.959644980564395
Merged-chr7-127208236-3	chr7	127207704	127208704	+	975.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347655)	promoter-TSS (NM_001347655)	264.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	6.52349589450698	6.38913004838385	6.8884059319966	6.86118789445321	6.67662182415881	7.1105856377395	0.438493067044703	0.132360426651099	0.486696114754724
Merged-chr13-93007293-4	chr13	93006788	93007788	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-66016.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	4.02621236751707	4.02034974953227	4.28933198514447	5.50409095691441	5.71531034328985	4.8694368629779	3.15605005700895	3.23905512077286e-11	4.77864004413596e-09
Merged-chr9-116109842-2	chr9	116109386	116110386	+	718.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009371, exon 5 of 8)	exon (NM_009371, exon 5 of 8)	65477.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.00004440705269	2.82051063765913	3.36695500048484	2.52165352688007	2.53318481512531	3.01801789019655	-1.87877894562484	0.029717137103652	0.207615746777554
Merged-chr9-32541417-4	chr9	32540944	32541944	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008026)	promoter-TSS (NM_008026)	8.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	8.20203849877985	8.30051049630739	8.24315157225976	7.98189919382404	8.23431398836484	8.08618342843461	-0.198661220228825	0.350090039594144	0.738177163457543
Merged-chr3-113630903-4	chr3	113630419	113631419	+	757.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026043)	promoter-TSS (NM_026043)	-770.0	NM_001038696	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	5.34719742857382	5.74580270087479	5.86224341543439	5.55628511603209	5.7124301218348	5.62236125498159	-0.0513753392674762	0.880579186674705	0.972540920690587
Merged-chr5-31941742-3	chr5	31941238	31942238	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-194734.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.24019735171118	4.21354861061958	4.01885021346809	3.67420061267485	3.39844927537828	3.67134378179792	-1.95187449627145	0.000438055769917363	0.00947484910405094
Merged-chr19-32782199-3	chr19	32781701	32782701	+	802.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	ID_B1|SINE|B4	24624.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.13872401708418	5.33883382432566	5.51401862960992	5.13612430474893	5.428242978604	5.1847461258546	-0.130852054419612	0.719736361632334	0.927946685343569
Merged-chr6-88500988-1	chr6	88500488	88501488	+	557.5	f0_balb.idr	Intergenic	Intergenic	17812.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	3.63921600850131	3.49874598084387	3.77281137295929	3.56133539110242	3.46696378304178	3.29839949324522	-0.668095799208045	0.25831527696269	0.655821613642261
Merged-chr7-16880874-3	chr7	16880366	16881366	+	815.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	5549.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	3.17962877902179	2.88805978763031	3.10960679729214	3.14291115154683	2.95160977629185	3.23815360662854	0.207322152306243	0.759791786748727	0.940572672765463
Merged-chr4-3679021-4	chr4	3678519	3679519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	898.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	8.52701940509661	8.54650249938393	8.30959153786535	8.39121036077866	8.59728659376106	8.25703819109149	-0.0564754025159812	0.798364532696972	0.951930937621884
Merged-chr2-91498430-4	chr2	91497951	91498951	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 31 of 37)	intron (NM_172668, intron 31 of 37)	-28311.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	5.65998009496402	5.25871421841404	5.5484379842825	7.2950975002241	7.48669793081574	7.09931559753462	2.99094727587441	7.08952333736417e-23	8.42721511221997e-20
Merged-chr11-60726869-3	chr11	60726366	60727366	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022009, intron 1 of 29)	CpG	397.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	7.68356851728523	7.83089132187409	7.42766862953264	7.49878658019702	7.47186079054393	7.20333765937365	-0.380389835223939	0.12477262311296	0.472526946914666
Merged-chr1-88235779-2	chr1	88235279	88236279	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 11 of 41)	B3|SINE|B2	8759.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.6500422022711	3.64227244721636	3.95581021343569	3.51662414358724	3.82903561774014	4.46456729594393	0.722025657275339	0.24222652805508	0.639326946903326
Merged-chr16-57530727-4	chr16	57530228	57531228	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-18514.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.58194962925153	4.33830166526687	4.15296295306682	4.16131945513932	4.12652765909047	4.22245110985632	-0.569986623022316	0.227399024252717	0.622496973615609
Merged-chr3-126660431-1	chr3	126659931	126660931	+	613.0	f0_balb.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	63480.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.32449169448474	3.82191233469124	3.77948630604982	3.9414734862474	3.73492689748514	3.68296143389586	-0.659300936587784	0.24136264885697	0.638385260200477
Merged-chr5-34187921-4	chr5	34187426	34188426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010753)	promoter-TSS (NM_010753)	-216.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	6.01269090714392	5.93661091043536	6.04400549112007	5.83546431596319	5.55502581562711	5.66483609000866	-0.552937038448237	0.0722913536423303	0.353157446871531
Merged-chr19-5851638-2	chr19	5851138	5852138	+	925.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026169, exon 11 of 11)	3' UTR (NM_026169, exon 11 of 11)	-6158.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	3.25787802641291	3.01624377372305	3.34618715669411	3.31430226552508	3.34961701094398	3.57340801669472	0.815064620836491	0.199589926099011	0.588163754351147
Merged-chr6-7844023-2	chr6	7843523	7844523	+	915.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1201.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	4.84991504129718	4.84038646598379	4.49518173089434	4.71520884385253	4.82046571467025	4.99611806294739	0.211859666216582	0.608036246266763	0.8848571974634
Merged-chr19-21778334-4	chr19	21777849	21778849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031997)	promoter-TSS (NM_031997)	9.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.60049837228433	6.6848936795449	6.66240909734486	6.6164674877299	6.2642247353595	6.36806653917536	-0.363973379568209	0.181657548684003	0.56413231734338
Merged-chr5-138257192-4	chr5	138256700	138257700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081108, intron 2 of 3)	intron (NM_001081108, intron 2 of 3)	1718.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	5.23639570587606	5.44264028613432	5.7484458470775	5.02470151252038	5.29854627011016	5.45160726757182	-0.425491860170896	0.256107917196465	0.653139712382384
Merged-chr4-9643720-4	chr4	9643216	9644216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	1.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.91488726984926	6.82157056989505	6.6867978691996	7.56425353871116	7.79147616574062	7.12389640172166	1.07333266110656	0.000111366953646455	0.00310225495498971
Merged-chr11-116431990-2	chr11	116431494	116432494	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2100.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	2.41339618542536	2.46999667200839	2.56018192218322	2.23197888056109	2.39156057046582	2.51001850097977	-0.626082171993037	0.452942480209442	1
Merged-chr5-76705627-4	chr5	76705123	76706123	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	113909.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	5.50873083799754	5.5863567679172	5.47761729042431	6.03419146189474	5.89404853553698	5.79330958217943	0.702045962951293	0.0246865571788583	0.18556052962913
Merged-chr5-124059835-4	chr5	124059328	124060328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27568.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.38764719973406	6.53687030059701	6.55438709895315	6.79391022542809	6.83875589578641	6.66416693458137	0.44543490570293	0.0848654419856162	0.385758802798497
Merged-chr9-106474559-5	chr9	106473988	106474988	+	792.313354	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311150, exon 5 of 11)	exon (NM_001311150, exon 5 of 11)	2461.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	1.92018158275381	1.8883788273775	2.08708996504229	1.81462552081453	1.64277987578356	1.96502301535471	-1.38899305311681	0.200859928808947	1
Merged-chr11-100397895-4	chr11	100397407	100398407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132425)	promoter-TSS (NR_132425)	-117.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	6.71111605752635	6.45315768657261	6.47862656422017	6.32810732802952	6.6164773453829	6.327773158029	-0.184640112255594	0.511836076693053	0.841594846107395
Merged-chr11-5487852-1	chr11	5487352	5488352	+	736.0	f1_balb.idr	Intergenic	B4|SINE|B4	-32789.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	2.5810469596999	2.43353404286878	2.44043501796437	2.911536210899	2.67487031245777	3.07657355872865	2.30865488500089	0.00626675054550771	0.0720524774617391
Merged-chr6-54591869-2	chr6	54591369	54592369	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153573, intron 1 of 3)	intron (NM_153573, intron 1 of 3)	1259.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	2.82766391154527	3.0075903357646	3.24927858183458	2.58362212112309	2.69957968687147	2.81481249350608	-1.72831240604851	0.0256947455337717	0.190033255215622
Merged-chr2-132595922-4	chr2	132595422	132596422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2274.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	5.09254795095972	4.98447776023041	5.28820285986415	4.58798887859454	4.86732393798418	4.74006252358931	-0.826939793415047	0.037710052966792	0.240137273590206
Merged-chr14-118663149-4	chr14	118662643	118663643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	13788.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	5.23468139932286	4.86076004372471	5.0541333329279	5.48710978669608	5.35906488451465	5.44073951181913	0.743460398365312	0.0402641466593803	0.249947710775419
Merged-chr17-34235139-4	chr17	34234629	34235629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3776.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	2.79609016027694	2.86070814708589	2.71628624808631	3.33465034724148	3.20788324221109	3.11730194281493	2.06563287749549	0.00486456080934973	0.0600995361283403
Merged-chr4-150138267-4	chr4	150137759	150138759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-10713.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	2.85804424298638	2.96842467340712	3.14399286283118	2.9405231196142	2.98157580418397	3.04530764768586	-0.00641842197993005	0.992467262394933	0.998523796268552
Merged-chr3-157634584-3	chr3	157634078	157635078	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	67686.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	2.41874753440311	2.35016354361032	2.41237867687417	2.48047116057529	2.48635456700248	2.73499348066348	1.06400022650408	0.18829502297808	1
Merged-chr11-9531848-4	chr11	9531350	9532350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339908.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.19898983662717	5.07693968249744	5.01434207361086	5.20501363577516	5.16251216664806	5.34126820756037	0.264331637260646	0.45996479152987	0.814054033257842
Merged-chr1-153553716-4	chr1	153553222	153554222	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4008.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	3.77524493601767	3.9117959223389	4.00575361492993	3.98742978148715	3.50319093728264	3.93254317271686	-0.247011506341985	0.657000144580487	0.904749317813633
Merged-chr10-94464977-4	chr10	94464506	94465506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	ID_B1|SINE|B4	-49851.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.18020085138563	6.3471188390964	6.03342300214658	5.47460911290597	5.86582997528278	5.83097513367566	-0.804820923527036	0.0114377961379981	0.110529724179136
Merged-chr19-57361644-3	chr19	57361138	57362138	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	629.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	7.08705352721397	7.18356745523392	7.29681096532142	7.23854921884824	7.02079034205937	7.01235099167562	-0.138794757000559	0.568784712106696	0.868728103030047
Merged-chr19-47580372-4	chr19	47579911	47580911	+	886.473206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164639, intron 1 of 17)	CpG	392.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	5.41095742293749	5.55281355838705	5.53597356826166	5.37446157315933	5.11090026253842	5.30296868584619	-0.470881910954718	0.169583034903411	0.546439877378084
Merged-chr3-142314249-3	chr3	142313748	142314748	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019809, intron 4 of 7)	intron (NM_019809, intron 4 of 7)	77602.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	2.65221241828542	2.71168393606499	2.788619343995	2.76420560994269	2.83615577841923	2.8613197101442	0.549878201516914	0.444489524185569	0.804233372367419
Merged-chr1-74435764-4	chr1	74435253	74436253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009509)	TTS (NM_009509)	26369.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	6.11405805887908	6.14854703598376	6.0729104177843	6.00404172274531	6.11284066209541	6.08933812281615	-0.0752678034817131	0.790282145676444	0.949368241827272
Merged-chr18-5401693-4	chr18	5401209	5402209	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66902.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	3.75577524629069	3.56189238400757	4.04454570302457	3.65559704946063	3.48480874659701	3.52385754028071	-0.811336750739743	0.160078736286926	0.532665419857735
Merged-chr13-113437053-2	chr13	113436553	113437553	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65791.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.37115770042322	5.34960783867469	5.28505542400387	5.47513757087567	5.45462534095006	5.88210634784382	0.513773474565994	0.139479711384016	0.499084106249493
Merged-chr7-134669047-4	chr7	134668471	134669471	+	796.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1716.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	3.43860622449553	3.26781265757712	3.20796653183483	3.60853564513209	3.03318787527315	3.61484970354736	0.50834901190773	0.451868647064353	0.809261238133718
Merged-chr8-104570638-4	chr8	104570132	104571132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20836.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	4.69034624527754	4.47283625414288	4.58890180619408	4.77536004758262	4.66318059766337	4.34235470932465	0.068653929728005	0.874706300367963	0.970754540400126
Merged-chr18-20745711-5	chr18	20745192	20746192	+	897.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019737, exon 1 of 9)	5' UTR (NM_019737, exon 1 of 9)	712.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	7.94235603932938	7.71587487030305	7.87713267981188	8.01208387575548	7.64114839134993	7.77753203947062	-0.0420310911854806	0.857896075097571	0.966785186918462
Merged-chr2-165878248-4	chr2	165877715	165878715	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	222.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.07545183296286	6.07458420721206	5.78655619404879	6.37245431996026	6.40904832526129	6.67448293856487	0.814145392488595	0.00594678001404525	0.0693368991713989
Merged-chr10-20003252-4	chr10	20002731	20003731	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	68705.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.15655416402607	5.05028643992279	5.22142798723485	5.41181746303811	5.25617117577426	5.28524183039152	0.364130226874871	0.29794394097111	0.694746089012559
Merged-chr7-73541196-2	chr7	73540696	73541696	+	996.3333130000001	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	550.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.73344394490921	8.59650269460747	7.822523131119	7.94594640662205	8.53611135859998	8.07606365315124	0.133093517350467	0.676485002702787	0.912525597578286
Merged-chr10-36892493-3	chr10	36891984	36892984	+	731.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-82060.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	2.97558039641121	3.48509214276284	3.42068531996393	2.90463629303063	3.0853318570744	3.33266301560827	-0.812612202119177	0.254304670257572	0.651297476085736
Merged-chr6-120471314-2	chr6	120470814	120471814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	B2_Mm2|SINE|B2	8117.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	7.15821741133368	7.36321715540611	7.15324543884468	7.33183440282929	7.10010888773231	7.1985902067427	-0.0313064652447146	0.897075645477932	0.97594098515935
Merged-chr15-73620388-4	chr15	73619888	73620888	+	872.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3064.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.32709962100366	6.44750714234288	6.80039411977769	6.4966661427838	7.19216251472442	6.2363693633507	0.295586971331159	0.405792063964994	0.780439975167702
Merged-chr18-69300701-4	chr18	69300216	69301216	+	745.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43776.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.20250461621943	3.64706912904038	3.42230759675233	3.42656254157776	3.30809603857615	3.43821745982393	-0.193262440340598	0.755246774884807	0.939266637440812
Merged-chr11-60539516-2	chr11	60539016	60540016	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172943, intron 1 of 3)	intron (NM_172943, intron 1 of 3)	1833.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	6.08935946498871	6.01260674747334	5.7212132184618	6.03572113992377	6.20713199759825	6.10549682793659	0.273270726441952	0.366060554805318	0.751105402903166
Merged-chr13-100408465-4	chr13	100407966	100408966	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008670, exon 16 of 16)	3' UTR (NM_008670, exon 16 of 16)	44398.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.94233960744078	4.74887511759167	4.77082273803985	4.75000309586784	4.51985809637004	4.79845864566249	-0.325171448388915	0.423561146554392	0.792056049318534
Merged-chr10-59966551-2	chr10	59966051	59967051	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14781.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	3.49792727637348	3.5639959374686	3.64887131739244	3.54125189537758	3.36619090708676	3.76744861774934	-0.0349377597585024	0.951991995768856	0.989013170479262
Merged-chr12-117378628-1	chr12	117378128	117379128	+	861.6666869999999	f0_balb.idr	Intergenic	Intergenic	-41616.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	3.06941895489043	2.8487006957967	3.04297316384207	2.63782246096132	2.41748100973946	2.7578403225451	-2.22955959569377	0.00789846350047822	0.0853083269662242
Merged-chr4-135433869-4	chr4	135433387	135434387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-82.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	7.24242183989423	7.14914625022348	7.04360635185063	7.24733196027417	7.30733830421377	6.75582791275499	-0.0184733822324951	0.94547069037707	0.987909250703712
Merged-chr15-76303879-4	chr15	76303380	76304380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 10 of 26)	RLTR20C2_MM|LTR|ERVK	3365.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	6.28957692022619	6.33329518159242	6.51310904613432	6.25439476866043	6.37459823292301	6.41410619100613	-0.044436791905162	0.871029795899927	0.970222087171093
Merged-chr12-117534511-2	chr12	117534011	117535011	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	18032.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.53675490761622	4.03277353896503	4.12150933378798	5.26724730854228	4.62715280559242	4.66805394838506	1.52633677861611	0.00254986062703624	0.0372674227950698
Merged-chr14-8215371-4	chr14	8214884	8215884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	-864.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	8.40696917682582	8.65220448933975	7.63366868373701	8.36797138978287	8.73741604233965	7.60464031404695	0.027648944273981	0.963463900933365	0.991116725160803
Merged-chr14-48138053-1	chr14	48137553	48138553	+	931.6666869999999	f0_balb.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	17184.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	3.13688027008182	3.14806789601405	3.27282687893696	2.7624590704642	2.57111903106256	2.81975696873774	-2.59526836525532	0.00113454232208922	0.0198659506600168
Merged-chr1-182341628-4	chr1	182341114	182342114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175127)	promoter-TSS (NM_175127)	-8.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	7.20879776919186	6.60575390104401	6.73446380372925	6.85725412863277	6.36137860744494	6.76208835753089	-0.326067330012016	0.296571298519856	0.693171366955017
Merged-chr2-167834368-2	chr2	167833868	167834868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97959.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.15523297142627	4.65832971731328	4.89442855133043	5.05159951663452	4.33944893625567	4.92372670415426	-0.25911048611337	0.57720924184487	0.87205828500771
Merged-chr1-138619296-4	chr1	138618805	138619805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	CpG	452.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	7.38109408245581	7.30837731058811	7.25960292686677	7.21571434909727	7.1420382439389	7.01303447954226	-0.282826496429684	0.227712384629659	0.622842513404052
Merged-chr6-117879496-5	chr6	117878934	117879934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16553.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	8.79595403203422	9.00925073079109	8.61195197633881	8.72520426559123	8.9431153232053	8.6413243487852	-0.0554517859160393	0.80515387495313	0.953787743121181
Merged-chr16-21640994-7	chr16	21640460	21641460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	53705.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	7.59621875868172	7.38734311939587	7.56475406087753	7.76183707355217	7.81286166646979	7.31085167817878	0.20244170911847	0.423656886376768	0.792082736807957
Merged-chr13-100786625-4	chr13	100786134	100787134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172301)	promoter-TSS (NM_172301)	-148.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	3.89787051047292	3.75882709127757	3.73697901004589	3.85020435575487	3.67304244126117	3.58826984820902	-0.302424418499072	0.576253257530959	0.871585692229598
Merged-chr10-81303515-4	chr10	81303011	81304011	+	997.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10548.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	4.73250885288431	4.60091966900275	4.27499735592574	4.15232301775732	3.92412281313201	4.15059790346229	-1.31351895610802	0.00614030273360785	0.0709515775389587
Merged-chr16-76283507-4	chr16	76283007	76284007	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89542.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.74306593008598	2.6650411805749	2.8505242696365	2.56071443116438	2.43815678240276	2.55463878578421	-1.38911648426468	0.0775959528544824	1
Merged-chr4-135307688-3	chr4	135307189	135308189	+	974.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34929.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.18590143644149	3.99748548355313	4.21947222349202	4.09337510816195	4.30450009560106	4.1495720942358	0.162885976076835	0.732822022888125	0.931908773695976
Merged-chr4-128729917-4	chr4	128729421	128730421	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	2350.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.1442931225958	5.68222061568751	6.20152619622134	6.31375247249777	6.38597665584976	6.13579212928895	0.450924987184356	0.152077149475391	0.520007249500677
Merged-chr5-66299109-4	chr5	66298606	66299606	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001201413, exon 17 of 17)	3' UTR (NM_001201413, exon 17 of 17)	38265.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	4.67280030471969	4.48555428434086	4.40264448374909	4.94052134481244	5.06809116539925	4.73635699987527	0.922597120996342	0.0269043509644971	0.195336585815708
Merged-chr6-142346343-3	chr6	142345823	142346823	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183165, intron 1 of 11)	intron (NM_183165, intron 1 of 11)	626.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	5.28944214869601	5.71607601042617	5.57688199041059	5.39812393820848	5.62360275257252	5.46795441236542	-0.0656151500227944	0.850086393729341	0.964801567373977
Merged-chr7-142381281-1	chr7	142380781	142381781	+	696.0	f1_balb.idr	intron (NM_009983, intron 4 of 8)	intron (NM_009983, intron 4 of 8)	6589.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.57396610128297	3.57373478956984	3.72594240950963	4.18422575085957	3.99688202524597	3.79773420317717	1.24908751671885	0.0202455805957866	0.162762731421663
Merged-chr6-54948356-1	chr6	54947856	54948856	+	570.0	f0_c57.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	23305.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.47055783589228	6.82515496272395	6.73753835236364	6.60431541098964	6.8911760981375	6.81121772143786	0.14299173863937	0.599539153839789	0.881068655236582
Merged-chr4-132078550-4	chr4	132078061	132079061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3248.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.73104931858286	6.67212608316134	6.66114443161235	6.86265619631298	7.01049723855391	6.68696048419164	0.280891461574455	0.27472438599738	0.672147114659483
Merged-chr14-67072079-4	chr14	67071568	67072568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360034, intron 1 of 8)	CpG	403.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	7.84225170946536	8.08914950483345	7.63893216096006	7.8257040807914	7.71447957865502	7.676731235321	-0.195151142750238	0.411351954937484	0.783877099438722
Merged-chr10-83359057-3	chr10	83358544	83359544	+	745.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1177.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	3.30075206846485	2.95803761518425	2.93037574802096	3.17206519119012	3.33226690602357	3.36365002127755	0.886217465700368	0.196398811574565	0.584231205404807
Merged-chr13-49292120-4	chr13	49291620	49292620	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 3 of 17)	L1M4c|LINE|L1	17088.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	4.14175905309544	4.53432750086144	4.5064607841283	4.27773434094729	4.35583758058901	4.57229385919127	-0.00613794676844281	0.98943799132718	0.997597007948949
Merged-chr10-75935816-4	chr10	75935332	75936332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175329, exon 2 of 5)	5' UTR (NM_175329, exon 2 of 5)	2702.0	NM_175329	103172.0	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	4.25020592913306	4.14343182308721	4.17931581228697	3.90295724061812	3.7511376338638	3.6289144027658	-1.28974251072429	0.0130802785057456	0.121389369274906
Merged-chr14-26612691-4	chr14	26612177	26613177	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 12 of 19)	intron (NM_001285467, intron 12 of 19)	-25457.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	4.39818559235748	4.13299239556109	4.25384022075112	4.35256579768074	4.18546650973976	4.32177483838525	0.046797822008856	0.919198715803864	0.981979004859879
Merged-chr13-60608675-3	chr13	60608197	60609197	+	753.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	6486.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.31850413814596	3.261729092713	3.67681910236442	3.26226206058765	3.31376816831762	3.27658879050978	-0.537545632887314	0.390492523199098	0.76961112307546
Merged-chr9-13555834-4	chr9	13555310	13556310	+	964.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64179.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.49341202693135	3.35270967895725	3.45123218624122	3.74739729395556	3.64746026245868	3.40730912834029	0.655434412564507	0.262146299906924	0.660009964678367
Merged-chr1-180812626-4	chr1	180812123	180813123	+	919.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 1 of 3)	CpG	982.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	7.36935458961144	7.73907945337175	7.42621404707924	7.57722428665795	8.01184360943063	7.91548271990502	0.467194245931675	0.0678742587982015	0.340919789463473
Merged-chr19-32884664-3	chr19	32884159	32885159	+	987.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127082.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.17086370290266	5.24304686577807	5.66363123966314	5.1368998246964	5.25402465182772	5.28746688308287	-0.274494644520477	0.456839143918992	0.811906949896656
Merged-chr4-35096260-4	chr4	35095782	35096782	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-55773.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	5.69344637247554	5.7151136245254	4.99974788772663	4.63274528642666	4.70744568832926	4.73908047847504	-1.74475178731454	2.41574805200667e-05	0.000857915338930306
Merged-chr7-28716783-4	chr7	28716255	28717255	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015796)	promoter-TSS (NM_015796)	-27.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	5.38642958315243	5.23460490776259	5.04396246937594	4.51027919612847	4.15572605389451	4.47014330924947	-2.01387185418624	2.22030340378398e-06	0.000109580039234354
Merged-chr5-115300339-4	chr5	115299902	115300902	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131932)	promoter-TSS (NR_131932)	588.0	NM_019682	56455.0	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	5.67009633357252	5.32761298352482	5.54238347871994	5.25583131105898	5.28986147897044	5.27608425754976	-0.479167717879643	0.164830624226874	0.539526193324456
Merged-chr6-40325487-4	chr6	40324856	40325856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023538)	promoter-TSS (NM_023538)	-122.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	5.03235587205886	5.33867704746853	5.0831633869039	4.83019630292313	4.96330780398699	5.00819249257451	-0.487517373043629	0.19684453677365	0.584754678471847
Merged-chr6-137697028-4	chr6	137696536	137697536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38046.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	6.5920261705861	6.79153479713096	6.2589267947908	6.13755619675072	6.45007086846743	6.27752785075185	-0.44882208838166	0.134632486174647	0.490439383589701
Merged-chr4-155564787-2	chr4	155564287	155565287	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	intron (NM_001355599, intron 1 of 10)	972.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	6.73896116154888	7.17403790341676	6.37405231171687	6.90532940934458	6.87428657420917	6.6958747971201	0.0205686664780728	0.946960597736839	0.988007649185823
Merged-chr17-35059046-4	chr17	35058556	35059556	+	850.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190449)	promoter-TSS (NM_001190449)	21.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	3.51350884650324	3.66364255192594	3.57073474912912	3.73300660932991	3.46182626822339	4.11714732717672	0.680585862312548	0.252106723287023	0.649632907970228
Merged-chr5-107869160-4	chr5	107868661	107869661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	CpG	5946.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	6.49147783770838	6.5986585548883	6.52029643368862	6.66026210162725	6.49016603307593	6.50848020978346	0.0256323433421924	0.921906263585704	0.982542868764899
Merged-chr3-36551924-4	chr3	36551418	36552418	+	862.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-688.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	3.9219459739296	4.2159244310878	4.27950524802505	3.96339475452129	4.42938478654118	3.9151252536714	-0.0209877497311447	0.968488220997351	0.992792165162521
Merged-chr7-101608061-4	chr7	101607590	101608590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26929.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	6.4915754830369	6.33423305505184	6.52772363826899	6.93686580585561	7.26215096368097	6.62281824717707	0.831054795129136	0.00413842218385531	0.0532719419978701
Merged-chr5-124497017-4	chr5	124496519	124497519	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	13864.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	4.49893772748159	3.88233611870933	4.18895840539577	3.95224906889611	4.03270348868562	3.74546809938801	-0.849893426172418	0.119736294137575	0.462471223255784
Merged-chr13-113613398-5	chr13	113612839	113613839	+	932.580017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5225.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.25213693375564	5.03036573940499	5.29175153280105	5.06067130557526	5.20540326018965	5.2938486183309	-0.00713674167106351	0.984242191134115	0.996529948649186
Merged-chr8-70743536-3	chr8	70743012	70744012	+	904.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	-11167.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	4.45416812244339	4.26345537097904	3.88853353575175	4.04313593266248	3.87101868570221	3.67095856996796	-1.03611997453685	0.0588057522973251	0.313862029323658
Merged-chr10-44069301-4	chr10	44068800	44069800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64454.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.31185220017064	5.32429012626033	5.45734532787039	5.08577044502171	5.37939380532346	5.14593763700308	-0.280882453133096	0.429001728008467	0.795570481157701
Merged-chr9-106893637-1	chr9	106893137	106894137	+	731.0	f1_c57bl6.idr	3' UTR (NM_153413, exon 53 of 53)	3' UTR (NM_153413, exon 53 of 53)	-1699.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	2.32533828517677	2.15794305560439	2.39580830354767	2.18137279920011	2.18334360837716	2.21291848105867	-0.717509160848726	0.410792658049317	1
Merged-chr5-129941807-4	chr5	129941245	129942245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001327)	promoter-TSS (NM_001001327)	-364.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	6.88837270257954	6.78771134383345	6.40732935777716	6.87986926554301	6.72734747226328	6.08469719782178	-0.15546176316351	0.638669323090946	0.89767562560391
Merged-chr2-91965634-4	chr2	91965144	91966144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2081.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	8.26122024716616	8.5082210258967	8.2127106837547	8.27677316166987	8.78992326660098	8.15232235645838	0.152171346746492	0.559823121429526	0.86512447604019
Merged-chr11-86202318-2	chr11	86201818	86202818	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_130959, intron 1 of 6)	RLTR6-int|LTR|ERV1	958.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	5.52885696842519	5.63600710934096	5.57265600771343	5.64910687278977	5.7913315417444	5.48892361007885	0.147727658791244	0.648059154385555	0.90166178452027
Merged-chr8-120109937-2	chr8	120109437	120110437	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4215.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	7.52629441033598	7.56907472776966	7.8039547826639	7.93773349105158	8.02576394826355	7.91595912809513	0.474609462263061	0.0329836684712496	0.221384616129365
Merged-chr15-101160849-2	chr15	101160385	101161385	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13187.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	2.90193147738601	3.25340590270999	3.31218515496581	3.50652147731743	3.07685229672024	3.54269614175745	0.88629455403346	0.201265483065673	0.590823718995537
Merged-chr4-139614683-4	chr4	139614166	139615166	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 7 of 8)	intron (NM_001205173, intron 7 of 8)	-8228.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.99538425991372	3.89708877403033	4.36077678568232	4.48295287239839	4.26651006252162	4.79958108419476	1.16415655725472	0.0202749240851614	0.162937215011947
Merged-chr2-127079655-4	chr2	127079169	127080169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	9012.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	8.23884619642074	7.93691681774428	7.97632498692979	8.04137638126972	8.16767463661957	8.06898988280501	0.049650119789459	0.822655239213099	0.958135961464233
Merged-chr1-140183316-4	chr1	140182766	140183766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009888, exon 1 of 22)	exon (NM_009888, exon 1 of 22)	145.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	5.86494934080108	5.60557317914094	5.65981893352184	5.84187336800678	6.04840804133324	5.69482579522781	0.293533731519315	0.36088945745435	0.746938274913623
Merged-chr10-50609687-3	chr10	50609190	50610190	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	17021.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	3.13533983468503	3.43378688548086	3.47987446365979	3.3500988694794	3.5760423445635	3.4968948849375	0.470877185334493	0.444558133497431	0.804325357136705
Merged-chr10-8387249-6	chr10	8386855	8387855	+	807.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	131470.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.61255510929884	4.74213641479597	4.83648913873389	5.04317539114909	5.04393851430795	4.90213942008518	0.615342221247601	0.111096939886996	0.445222471421143
Merged-chr5-106887679-7	chr5	106887178	106888178	+	880.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177873, intron 20 of 39)	intron (NM_177873, intron 20 of 39)	38212.0	NM_177873	330149.0	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	3.1721040437304	3.3301908506909	3.39627127566459	3.32016235568701	3.25717460392471	3.76479460606052	0.604736198569801	0.341696731231145	0.730935106878357
Merged-chr3-95217956-4	chr3	95217466	95218466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172512)	promoter-TSS (NM_172512)	-24.0	NM_029885	213054.0	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	7.78564440199183	8.17971853413713	7.78508578424927	8.07005359479983	8.30676303544876	7.84929263425856	0.228495531199239	0.368743763079205	0.753594740654151
Merged-chr13-56134326-2	chr13	56133826	56134826	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	intron (NM_001159513, intron 1 of 8)	1224.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	4.60112436579975	4.63429839454106	4.38529988458702	5.19660268177942	4.57937079713199	4.76044581468582	0.741023369492789	0.0988593507196818	0.419333642002316
Merged-chr12-100089452-4	chr12	100088923	100089923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22908.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	7.19226946824941	7.3526841212503	7.09876528127339	7.35140318726133	7.55081355076523	7.11705201057346	0.205000138538498	0.41953852127221	0.789091124470564
Merged-chr16-3743453-1	chr16	3742953	3743953	+	1000.0	f0_balb.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-646.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	7.74396842686078	8.04222783514228	7.97530049066095	8.08277525924518	8.29761663426427	7.84104666270865	0.240762398990267	0.319573073993887	0.713540438213725
Merged-chr9-110411707-4	chr9	110411208	110412208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3498.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	3.47038366319407	3.16912084989739	3.61920769281045	3.81897011062162	3.59987024113029	3.47194275804747	0.767096618447181	0.212845158418861	0.605463742836711
Merged-chr2-92375904-2	chr2	92375404	92376404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028114, exon 2 of 11)	non-coding (NR_028114, exon 2 of 11)	665.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	5.83058664321523	6.04790433659735	5.89585871625473	5.96098076793527	6.08510677802098	5.90836674522824	0.109259386471714	0.714598712437158	0.92601294778158
Merged-chr2-91723215-4	chr2	91722703	91723703	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6935.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	6.02582506664016	6.19035871498889	6.08927329549674	5.57511785223169	5.90580352707202	5.84995379203991	-0.554198027512937	0.0714414078206666	0.350618370922116
Merged-chr8-3502330-2	chr8	3501830	3502830	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053177, intron 1 of 13)	intron (NM_053177, intron 1 of 13)	1811.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	3.68760428310198	3.74463427531778	4.3077020479935	3.75768570822479	3.3227387009937	3.76484248631822	-1.0030805973717	0.103324980148162	0.428463201325997
Merged-chr15-59412874-4	chr15	59412354	59413354	+	827.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	38656.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.62418701543738	5.26768709210269	5.30101995626365	5.05314277504159	5.29712715867411	5.36461632750136	-0.336062499169184	0.355045222704271	0.742052720053678
Merged-chr4-130784960-4	chr4	130784467	130785467	+	935.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7570.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.86042849883471	4.67939058405607	4.72448795312049	4.75311527383142	4.87934207885842	4.93913482929684	0.224560149716687	0.567895750885743	0.868402679242594
Merged-chr14-54783257-2	chr14	54782798	54783798	+	598.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.09685086785962	4.04115137564068	4.00553722068929	4.22543031521942	4.19228935340414	4.17136185838137	0.41736254166441	0.375391838716046	0.758646622209238
Merged-chr2-35189184-2	chr2	35188684	35189684	+	643.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 4 of 7)	intron (NM_026697, intron 4 of 7)	11936.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	4.00285572103776	4.29496866837084	4.22370942106187	4.19357065981673	4.21842824896551	4.05449469756742	-0.0462566445806747	0.923163798371704	0.982693984177635
Merged-chr6-72381035-2	chr6	72380535	72381535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	-567.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	6.30177491840124	6.31579529973512	6.41406779619637	6.29673343121726	6.57115328039254	6.34110924815085	0.124883301024841	0.651226688586625	0.902745027970277
Merged-chr2-5145968-4	chr2	5145469	5146469	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028804, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8193.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	2.8159969393494	2.89180761581386	2.88912982049201	2.86110286639197	2.85752270964809	3.01985603937288	0.223003622095004	0.747368127291214	0.936600911319824
Merged-chr13-37847776-4	chr13	37847287	37848287	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	20394.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.53596752346805	4.60343089174058	4.62923812266447	4.31641335560434	3.95974351432869	4.4126829313186	-0.933238945390092	0.0445549118959942	0.266063234465472
Merged-chr18-46522770-2	chr18	46522270	46523270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	(GGA)n|Simple_repeat|Simple_repeat	3201.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	5.98125454846362	6.16204452221055	5.76750837434703	6.13371989335542	6.25712297637705	6.1011139968727	0.304331666938284	0.312242633549876	0.707056878336701
Merged-chr16-95731144-2	chr16	95730644	95731644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28737.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	2.68000566393469	2.77006141450652	2.75702268839679	2.96233754906075	2.71590011513006	2.95228145936807	0.723430125585362	0.318806946279985	0.712819123861698
Merged-chr7-19636495-2	chr7	19635995	19636995	+	712.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 9 of 13)	intron (NM_019649, intron 9 of 13)	-7057.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	2.65150778947685	2.71633405901296	2.76452829260396	2.88825931205794	2.80043488124824	3.06878205477203	1.09132393806635	0.133272701361867	0.48836948380917
Merged-chr19-5660298-1	chr19	5659798	5660798	+	579.0	f1_c57bl6.idr	intron (NM_001164481, intron 4 of 17)	intron (NM_001164481, intron 4 of 17)	3409.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	3.62184035836084	3.71420270801534	3.95646320679665	3.9090094641165	3.84775493174219	3.67150248510771	0.175355554007717	0.745932661010263	0.936251303305737
Merged-chr18-46311922-4	chr18	46311414	46312414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	14.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	4.80268854976531	4.87748969128199	4.84561507711199	4.71780577444286	4.34995520882357	4.5995798584212	-0.673369333638804	0.105936307892414	0.43446438704272
Merged-chr11-107417419-4	chr11	107416928	107417928	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	53292.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.24060039492308	6.25356454572043	6.44611123954587	6.36231937835833	6.42632303265773	6.21577693647614	0.0588379874214773	0.831936497423174	0.960547551840437
Merged-chr7-63911065-4	chr7	63910568	63911568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5789.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.69856672435663	7.36413735831203	7.4031501201458	7.33270940233698	7.53286443388842	7.35050014850293	-0.128917314158451	0.596814579268407	0.880063799680126
Merged-chr15-27923011-2	chr15	27922511	27923511	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	B2_Mm2|SINE|B2	102837.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.88155367285604	5.66173721992356	5.45078936405902	5.62761478254781	5.74235826393248	5.24594376042624	-0.213547515014704	0.54945974521206	0.860309852277912
Merged-chr1-132139723-4	chr1	132139170	132140170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	15.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	4.32821484110929	4.32153440346545	4.51926157358094	4.51439702790765	4.08391890807756	4.37811550666972	-0.145470996239946	0.755187175243335	0.939242515534853
Merged-chr9-83599646-4	chr9	83599140	83600140	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172507, exon 4 of 4)	3' UTR (NM_172507, exon 4 of 4)	51302.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.55276060939227	3.81561959116077	3.75201497404692	3.8654268966864	3.87190673754522	3.77010381073534	0.416872510794421	0.435807461060186	0.799370838506028
Merged-chr9-7833727-3	chr9	7833284	7834284	+	621.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291503, exon 2 of 8)	exon (NM_001291503, exon 2 of 8)	3022.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	3.60753860124705	3.64794080855968	3.60775899451611	3.98681085839737	3.65348587630193	3.83694784297619	0.688103020328482	0.207783354022159	0.59868364609575
Merged-chr11-117194645-4	chr11	117194189	117195189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4972.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	7.53567494149832	7.43276105497351	6.98903358415008	7.29639449011829	7.58560671344254	7.04728713097779	-0.0154735261247173	0.956676413762211	0.989887454023164
Merged-chr16-24631999-2	chr16	24631499	24632499	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-89856.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	2.95725668050226	3.05958118289831	2.77979316186425	2.83245495196261	2.84858135426405	2.97786255692815	-0.280635735261347	0.692147367669979	0.918590542007936
Merged-chr6-34994836-1	chr6	34994336	34995336	+	541.0	f0_balb.idr	Intergenic	Intergenic	-16837.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	2.83414781256806	2.69922604120859	2.47562370959628	2.84683574934958	2.62013165360022	2.81544539905308	0.424789541173427	0.594147056138388	1
Merged-chr17-31039822-4	chr17	31039316	31040316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17878.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.88975464705964	8.20277858862353	7.70465619998707	7.77034044036728	8.06108552034407	7.36358116149428	-0.258057092538241	0.361693090646075	0.747458707295016
Merged-chr9-47643451-3	chr9	47642955	47643955	+	574.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	113103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.59663594875401	6.19161099218021	6.26826183349476	6.38179179127787	6.37880556769393	6.24571722951372	-0.0464875656269772	0.872499924827221	0.970261003150518
Merged-chr13-60724190-4	chr13	60723555	60724555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 11 of 26)	(CA)n|Simple_repeat|Simple_repeat	62309.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	7.36622245269195	7.17004392688316	7.33679180851049	6.52862500825312	6.65206903415249	6.69028217150023	-1.02457060904599	3.53574647407963e-05	0.00118269182272693
Merged-chr4-129495184-2	chr4	129494684	129495684	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3994.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	4.29611194494187	4.21552813406824	4.66542521908952	4.3198377372902	4.36488378801792	4.62046310305612	0.102587361534175	0.825437854819248	0.958821343666982
Merged-chr5-146777251-4	chr5	146776733	146777733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	17723.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.82829007163477	6.04841846390891	5.84411028554659	6.0042676678903	6.31249473435783	6.29847211572807	0.514204165800688	0.0886668476011364	0.395252922704133
Merged-chr19-34608549-2	chr19	34608049	34609049	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005858, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	592.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	6.77658562643993	6.79532203078396	6.37371494303732	7.79938810230585	7.92407382035543	7.10288740058961	1.48434676500707	2.12939578399251e-06	0.000105528745916884
Merged-chr6-135166848-4	chr6	135166381	135167381	+	911.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	1334.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	5.91173850763408	6.19410563190721	5.6906183386982	5.91507471240965	5.86932354076377	5.51410141070503	-0.302998262202403	0.369484948145893	0.754197418440866
Merged-chr12-110816988-4	chr12	110816482	110817482	+	888.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	23957.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	3.67322974461448	3.62818827544994	3.92155236556236	3.58438617280242	3.38667413493018	3.54853264943314	-0.844494692336978	0.139745024625787	0.499501869026269
Merged-chr6-47877595-4	chr6	47877124	47878124	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146175)	promoter-TSS (NM_146175)	69.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	5.46867007862541	5.146409879337	5.63041294001811	5.3621335244233	4.80665142690917	5.48284542622073	-0.365613281635824	0.369961752811818	0.754416738955496
Merged-chr12-98628175-4	chr12	98627661	98628661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289572)	promoter-TSS (NM_001289572)	19.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	4.3118226879044	4.29725439673124	4.10714762384571	4.18326751414743	4.10504769677371	4.17631766882065	-0.266221207242959	0.567964105945869	0.868453711583277
Merged-chr15-83033356-4	chr15	83032852	83033852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	45.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	6.00119415253465	6.22655023671237	6.55291340630165	6.60323701330646	6.43376981526569	6.69064931288036	0.499222001316606	0.0943694232666464	0.409421292620633
Merged-chr11-98359518-3	chr11	98359021	98360021	+	943.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	1153.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	6.67309109537338	6.86631405300203	6.54731889637748	6.63740911442617	6.95268247482113	6.5153895048754	0.0289595054623113	0.918143801772976	0.981747877135909
Merged-chr15-12211680-4	chr15	12211174	12212174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	6646.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	4.44164422339827	4.52834792634239	4.41240506039285	4.51387103941008	4.42918644784708	4.3452574573726	-0.0780205094561395	0.856648789232411	0.966560323116284
Merged-chr9-22117172-4	chr9	22116681	22117681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	14.0	NM_001357311	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	6.6303265745436	6.87988607866819	6.62147277911249	6.7412816782317	6.89443732101227	6.50266725289073	0.0194577762708406	0.943412691932447	0.987380806962619
Merged-chr12-76553189-4	chr12	76552681	76553681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-5256.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.57631945504271	6.57233164668865	6.22035818348682	6.34716395290982	6.30289326945006	6.23823511030342	-0.292477613166485	0.298306588055718	0.69500092474273
Merged-chr16-4636081-2	chr16	4635581	4636581	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 9 of 27)	intron (NM_030205, intron 9 of 27)	-3864.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	2.55043502833285	2.33842419945375	2.71670061181558	2.47227785573827	2.19837682304996	2.54775506512052	-0.785931114455558	0.367591852141012	1
Merged-chr3-100703417-4	chr3	100702894	100703894	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17921.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	2.95569947803532	3.02467213423068	3.00332815583512	3.01447673987375	3.03324470978102	3.13352932715705	0.293177238774608	0.656784467674667	0.904693205515276
Merged-chr10-13201075-4	chr10	13200604	13201604	+	895.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-7967.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	4.96552705442109	4.89973705027151	5.21306151431444	5.31134120437543	5.33850431490782	5.56265099750533	0.777339958589761	0.0319900770174137	0.217061920285816
Merged-chr19-46487979-2	chr19	46487479	46488479	+	556.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13669.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.75174989787088	4.52783901779453	5.10816263633148	4.58752733307327	4.79563565491163	4.80317278105079	-0.16680547670969	0.698712991259421	0.920452297723992
Merged-chr10-87696645-3	chr10	87696156	87697156	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161609.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.68826908652101	3.59288199289967	3.90241892397164	4.97873288215854	4.86158580547096	4.92880511126983	3.5398705599431	3.24523143377564e-11	4.7792781794974e-09
Merged-chr6-7753357-4	chr6	7752843	7753843	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60161.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	3.07848615549843	2.82951718198621	2.9439480428408	2.98367663674484	2.63057501888428	2.8320119850135	-0.660734452496992	0.371754817132156	0.755825969975854
Merged-chr5-111330663-4	chr5	111330193	111331193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-4.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	6.69944612624852	6.80284922818297	6.89088543027249	6.64785863968878	6.32965077081691	6.49290589298566	-0.482154686578633	0.0712242611091061	0.350092763620822
Merged-chr19-37155870-1	chr19	37155370	37156370	+	541.0	f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	Tigger10|DNA|TcMar-Tigger	-17973.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.95594802391778	3.73104757856142	3.70222020203407	4.32222390486856	4.09494452442112	4.2730302922762	1.25430641268747	0.0148540028809153	0.131682492192116
Merged-chr6-125446958-1	chr6	125446458	125447458	+	594.0	f1_balb.idr	Intergenic	Intergenic	47802.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.3984037931201	5.18467102741895	5.31589836982915	5.87414668661367	6.11138330747868	5.68148699994549	1.13858515876674	0.000692909667074501	0.0135733992823079
Merged-chr5-44075573-3	chr5	44075029	44076029	+	756.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 1 of 22)	intron (NM_001163578, intron 1 of 22)	19239.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	1.96262784072967	2.04764066304454	2.05427904871697	2.13394073837832	1.97948614875244	2.26145729018568	0.790561900596945	0.391452422125183	1
Merged-chr5-90853375-3	chr5	90852864	90853864	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37881.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	5.43061814269864	5.07648861903563	4.73520641637171	4.19129775041393	3.94658446766459	4.02881028159947	-2.70895285716897	3.59101608051951e-08	2.88418210451609e-06
Merged-chr10-17669624-4	chr10	17669101	17670101	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53627.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.10760400043057	3.66423743200117	3.76248744002935	3.61880457752947	3.62973790355222	3.93184763850508	-0.436235188375721	0.438983838231857	0.800937323779458
Merged-chr19-9134977-3	chr19	9134465	9135465	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025610, exon 2 of 7)	exon (NM_025610, exon 2 of 7)	601.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	4.79779226352744	4.93153569129911	4.93746907786373	4.38360627547821	4.31038759831442	4.41574806634209	-1.2716299233488	0.00229033146410927	0.0342882152690904
Merged-chr19-10904989-3	chr19	10904485	10905485	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134129, intron 15 of 15)	intron (NM_134129, intron 15 of 15)	6340.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	4.82799629996363	4.68079052280315	4.71103755690314	4.69422652959912	4.41857470740251	4.6171710838642	-0.39956382963447	0.335393673841254	0.725511519189957
Merged-chr16-21411891-4	chr16	21411372	21412372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11246.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	5.61602099333741	5.61770670747763	5.84278361504993	5.82016564202651	6.16257905412277	5.99744273329769	0.569005849083711	0.0698412798818049	0.34601686313815
Merged-chr5-141038561-4	chr5	141038059	141039059	+	861.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37963.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	3.907168484154	3.44597374130632	3.86800878244675	3.94576527592805	3.69760340629976	3.88828811520101	0.28990143695728	0.608405061548333	0.88499088740025
Merged-chr15-68175890-4	chr15	68175386	68176386	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 6 of 13)	intron (NR_152182, intron 6 of 13)	82970.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.70123195884646	3.75397527870726	3.4257693572262	3.37340845974978	3.38925378449037	3.71363679734692	-0.524737815878291	0.379707257959599	0.762033755102441
Merged-chr11-101543677-4	chr11	101543165	101544165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8290.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	6.76110860862342	6.83939607377935	6.54638027187007	6.39260447135579	6.44420023854648	6.16532546537808	-0.607963867214105	0.0274881369007629	0.19766942314741
Merged-chr11-110430803-4	chr11	110430314	110431314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	31712.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.15355766918391	6.11270104501354	5.67028298059807	6.73805037883265	6.80410057983279	6.39289505309697	1.07096601064363	0.000633198340256801	0.0126530181306647
Merged-chr3-27213166-4	chr3	27212656	27213656	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30152.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.86823545933403	4.68670000696368	4.9681880654559	4.91468737436576	4.60098698035146	4.69928483885588	-0.22163825223895	0.58663153551742	0.875615538765309
Merged-chr9-83536286-4	chr9	83535767	83536767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12071.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.38893308969909	6.53965436863954	6.56849034555454	6.56206993122306	6.53136869409418	6.39358944888334	0.00690411682647796	0.979258738143624	0.995177657748265
Merged-chr15-80561317-4	chr15	80560812	80561812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163189)	promoter-TSS (NM_001163189)	-842.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	4.0054372230838	4.36423046578283	4.17287260945659	4.2633179050502	3.84382694460648	3.89305889994737	-0.505927393482094	0.329284976918078	0.721200925466542
Merged-chr14-27122636-2	chr14	27122152	27123152	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21341.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.37017485344615	4.17049448454442	4.37145773254976	4.00996044162199	3.97480056683524	3.92635267305883	-0.947146824747798	0.0496855407239226	0.283594078238178
Merged-chr7-67953197-4	chr7	67952690	67953690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	CpG-13221	933.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	3.74076670941175	4.04456605828213	3.49602349623511	3.524816787675	3.47485220309985	3.62582499757333	-0.855145472634568	0.145311949591965	0.508338649447163
Merged-chr16-33261798-3	chr16	33261315	33262315	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080557, intron 1 of 13)	RMER4A|LTR|ERVK	10359.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	3.96065885741734	3.94784971836996	3.90359224049992	4.05513019047521	3.6656298281767	3.92318558374331	-0.164458181698499	0.753203761814438	0.938549578325581
Merged-chr15-58890696-3	chr15	58890200	58891200	+	895.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175151, intron 11 of 11)	intron (NM_175151, intron 11 of 11)	1471.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	5.98556038671616	5.80186877042512	5.92052520167408	5.93199907118162	6.19042300759377	5.90914358520409	0.215423522312034	0.477998099336771	0.823548314517321
Merged-chr4-135856039-4	chr4	135855569	135856569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-2.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	7.10856792228251	6.88076848047593	6.77575143968446	6.8377541103542	6.88517653581696	6.92350074252843	-0.0841149766034492	0.740419717436751	0.934528157499283
Merged-chr8-35639218-3	chr8	35638722	35639722	+	920.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	MLT1A|LTR|ERVL-MaLR	-50202.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.0833892918925	2.99962643313818	3.25558162525454	4.40962292162758	4.24763617903134	4.33659261483912	6.7145071377306	5.69622951044678e-08	4.33246677427108e-06
Merged-chr14-63148263-2	chr14	63147763	63148763	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 7 of 7)	B3|SINE|B2	25801.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	2.65831102412105	2.84017375516095	3.08713158837985	2.57388657450449	2.60798606201803	2.93764085410996	-0.808247362645885	0.301664952694717	0.698377118776631
Merged-chr2-166024338-2	chr2	166023838	166024838	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	B1F|SINE|Alu	31701.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.00627715806246	5.24644280767568	5.66904216870575	5.33447913812335	5.07198667755456	5.47414545061397	-0.0581916094009137	0.882848879263626	0.973321423742277
Merged-chr16-20671963-4	chr16	20671458	20672458	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	-769.0	NM_145941	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	6.08724374695211	6.28403670530462	6.16314531212134	6.85508275265328	6.91205979218297	6.3926672087282	0.918782523272794	0.00165042586241176	0.0266554027871813
Merged-chr19-55802241-2	chr19	55801741	55802741	+	634.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	60431.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.2718044244573	3.73111621184384	3.82981729168643	3.53589999647672	3.59950751262766	3.70385166099847	-0.0578414670820942	0.923739441598083	0.982733195971172
Merged-chr8-70605802-4	chr8	70605298	70606298	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	2516.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	4.24182356613303	4.01945060220603	4.16836764206263	4.83796231001688	4.48403059156177	4.42603453770254	1.17789294158763	0.0114403056470286	0.110529724179136
Merged-chr7-4149934-4	chr7	4149443	4150443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175529)	promoter-TSS (NM_175529)	-71.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	8.90342270278555	9.43772614714037	8.74080261452907	8.80931369843197	9.16580512648049	8.84629295098828	-0.157827030102001	0.550366160911697	0.860699816966477
Merged-chr5-105649542-2	chr5	105649042	105650042	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50427.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.83581045777241	4.40312956589727	4.94438679053218	4.57585788690743	4.44114220071152	4.64820514802555	-0.44944059380775	0.310362383716122	0.705829393476587
Merged-chr18-60753703-2	chr18	60753203	60754203	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5038.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.53054503839386	4.19959901634491	3.97540759878301	4.1868653498547	3.98579539605135	4.04675832280045	-0.530045033143769	0.295312831449422	0.692180002232212
Merged-chr8-117264734-4	chr8	117264230	117265230	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	7711.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.5513869762262	4.56819749214124	4.75048325277725	4.58130821186766	4.42128272312373	4.74170583827013	-0.10310223007567	0.807797864116136	0.954568947211821
Merged-chr1-10039076-1	chr1	10038576	10039576	+	661.0	f1_balb.idr	promoter-TSS (NR_102282)	promoter-TSS (NR_102282)	858.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	6.04677476179311	6.09095612643942	6.10325285667925	6.33904816353677	6.43538972955585	6.22824440210905	0.444233917508988	0.110240965357789	0.443565292335149
Merged-chr5-45491595-4	chr5	45491086	45492086	+	877.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-1788.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	4.51447301580274	4.52472149698368	4.31806878088483	4.4825875466424	4.31459004129198	4.47505042229358	-0.107387878062232	0.806367291112831	0.954128289282393
Merged-chr4-11453180-2	chr4	11452680	11453680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32778.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	3.11207387221888	3.21256818165002	3.32308631907426	3.33182890237499	3.4266781915434	3.28123351160196	0.560013616177055	0.364694813842709	0.750028369485675
Merged-chr7-110018264-4	chr7	110017744	110018744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362172)	promoter-TSS (NM_001362172)	-7.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	7.25616608005476	7.65522782911728	7.5386976449049	7.06342107985907	7.23267960559728	7.21227776900394	-0.477275474220171	0.0550214109172303	0.301402375377862
Merged-chr1-172206345-2	chr1	172205855	172206855	+	883.0	f0_balb.idr|f0_c57.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	449.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	7.78038453507608	7.76870108341468	7.41915410316532	7.4945615778903	7.5945126250771	7.09485391150908	-0.364681506916744	0.166169578104995	0.541302113093556
Merged-chr5-53593667-2	chr5	53593167	53594167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3181.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	3.7655081776791	3.87977529470414	3.97399007987013	3.99383178500904	4.29565045160459	4.13767805358939	0.84023605855125	0.0938296016913417	0.408036662356703
Merged-chr17-24719214-2	chr17	24718714	24719714	+	744.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	618.0	NR_028515	100306952.0	Mm.484806	NR_028515	ENSMUSG00000089255	Snora78	ACA64	small nucleolar RNA, H/ACA box 7	snoRNA	7.57862980092217	7.57693040169379	7.31810239456481	7.07954073339264	7.38520743593067	7.0071113977636	-0.479043507989614	0.0593013490612867	0.31543480487704
Merged-chr8-124242382-4	chr8	124241855	124242855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	MIR|SINE|MIR	10961.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.90506083203294	5.62709616721677	5.89532024263152	6.14777200452346	6.13207776029703	6.33389691049315	0.678544345924249	0.0244152296968607	0.18416620007096
Merged-chr12-83922081-4	chr12	83921620	83922620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073563)	promoter-TSS (NR_073563)	-186.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	5.80196516757726	5.76331265107888	5.91136459527192	6.08327055353181	6.04533327814275	5.71618400948597	0.259517550751825	0.401275292082168	0.777399639198441
Merged-chr11-110537820-3	chr11	110537306	110538306	+	826.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58466.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.53873057830945	5.48070214571118	5.32831811430795	5.65375461411018	5.66448276069502	5.6311277790568	0.359671865479515	0.265586533462614	0.663352472724895
Merged-chr18-24528423-2	chr18	24527923	24528923	+	989.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 1 of 7)	(TTTTG)n|Simple_repeat|Simple_repeat	1781.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	3.1849111975528	3.32097823548094	3.24386259078306	3.42486543118949	2.86045486020514	3.48013045807265	0.130423532016139	0.853315300627267	0.965672676480491
Merged-chr8-126593367-4	chr8	126592866	126593866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	70.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.69889862971438	7.95377591347698	7.9878779341331	7.93632709995949	7.73295976679074	7.80276993992072	-0.0833003621013899	0.714053394223172	0.92568727653408
Merged-chr1-36447101-1	chr1	36446601	36447601	+	615.333313	f0_balb.idr	Intergenic	Intergenic	-1830.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	5.81126981652018	5.97718383300124	6.15830417355436	6.07143479563713	6.12845029590916	6.13552281964851	0.226235896589291	0.443742785388454	0.803884349333946
Merged-chr9-57260533-2	chr9	57260033	57261033	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2066.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	2.52500217833417	2.56628045840307	2.80522010822672	2.80953039859351	2.5840563793116	2.9930832418063	0.893626981140169	0.250685062120914	0.648153521953385
Merged-chr7-42642620-4	chr7	42642144	42643144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242388)	promoter-TSS (NM_001242388)	-40.0	NM_001242388	208111.0	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	3.4127437666643	3.79181013495341	3.58096793599379	3.72175143419694	3.47242554474867	3.70457711950871	0.086468488944177	0.881819562692426	0.972916480004659
Merged-chr11-116828692-2	chr11	116828192	116829192	+	572.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026280)	promoter-TSS (NM_026280)	-565.0	NM_001347633	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	2.34998856690531	2.39871078132268	2.64975126396945	2.0880848928122	2.03550762770458	2.08222054311529	-3.47174029256426	0.00201310389805582	1
Merged-chr2-91948255-1	chr2	91947755	91948755	+	1000.0	f0_c57.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2093.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.16752578568742	7.26447334681136	6.97765284428494	6.78324612366085	6.75704235456384	6.50173847919948	-0.695873313446661	0.00723368711843251	0.0800399784242729
Merged-chr17-26512598-4	chr17	26512078	26513078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4106.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.36141683343085	5.70142367321862	5.43848336675013	4.90699950217523	4.69844427355502	5.05670367067598	-1.30574140911197	0.000507482107135991	0.0106070261669358
Merged-chr12-91766480-4	chr12	91765979	91766979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	19957.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.60315234205017	8.59946509074078	8.00722166235479	8.5020559331955	8.75672707562515	8.33021639048113	0.147734067494806	0.574319327050708	0.870582911329883
Merged-chr6-124737758-2	chr6	124737258	124738258	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	intron (NM_001077705, intron 1 of 15)	951.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	5.47987325924512	5.39659839839659	5.7253963327317	6.65088175600722	6.84978551856393	6.20253200159611	1.84859090578886	1.14194565662729e-08	1.02170983007144e-06
Merged-chr13-23622558-4	chr13	23622091	23623091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015787)	promoter-TSS (NM_015787)	-33.0	NM_015787	50709.0	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	7.07421095147742	7.43411172920742	7.53835968706212	7.24607420781642	7.85909983970469	7.8037877709285	0.447192373313545	0.116034793701321	0.454881550635583
Merged-chr11-3197794-8	chr11	3197294	3198294	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4331.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.99041938325634	6.79187131616433	6.90786165972767	6.59927329463121	6.33325011437097	7.47594404973873	0.436501756001671	0.515164247779611	0.843376573195867
Merged-chr6-17409881-4	chr6	17409390	17410390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54067.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.82238139023226	4.64053023038339	4.52902849760808	4.83080357324547	4.89348520864475	4.87952438971286	0.436757383900876	0.276393796343898	0.673781238279174
Merged-chr4-101650587-4	chr4	101650068	101651068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	2785.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.62968552458488	5.71398698454705	5.86742010194958	5.70678290375342	5.54565832683604	5.73349761495384	-0.139990753729017	0.658695555464324	0.905032030698076
Merged-chr14-31167607-2	chr14	31167107	31168107	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	1034.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	3.24312876257503	3.28370910717744	3.29017293996958	2.93681673798836	2.95866417124234	3.30658025144114	-0.880095539344067	0.188147854168677	0.573574205225435
Merged-chr15-97520181-4	chr15	97519657	97520657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	185665.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.34669553820288	5.67675326724933	5.42437549252071	5.05466609706995	5.19055576666308	4.94434459023849	-0.835927193123846	0.0219319217319026	0.171710057769535
Merged-chr14-55677701-4	chr14	55677185	55678185	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177992, intron 8 of 9)	intron (NM_177992, intron 8 of 9)	4132.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	5.00832477038123	5.29938825763071	5.181753889136	4.6823491795586	5.50257040725664	5.277465774724	0.0780140704249215	0.854746766197335	0.965987623019113
Merged-chr10-59235371-4	chr10	59234876	59235876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	13454.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.20623206658927	7.15859897777703	7.31177087044645	7.40764626485268	7.5144111463599	7.04847741457716	0.187236552687089	0.45916031727214	0.813443444038073
Merged-chr2-68787911-2	chr2	68787411	68788411	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-73530.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.17118625147766	3.18702564190778	3.40295511878135	3.280164632174	3.25868419608208	3.98847672890985	1.08984116198521	0.105402359266647	0.433339508714069
Merged-chr19-29572476-4	chr19	29571963	29572963	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 8 of 25)	Tigger7|DNA|TcMar-Tigger	50181.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	4.79612131825896	4.71813446946364	4.56895149979415	5.21357344956198	5.42057559534624	5.21318183666596	1.25864954187211	0.00103060278112526	0.0184515343665958
Merged-chr9-120571502-4	chr9	120570984	120571984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-33.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	7.53336323438682	7.77032185659511	7.56633813796726	7.66368892560862	7.74193122348849	7.3586612155321	-0.0341339478082935	0.887850933816694	0.973901873299666
Merged-chr8-109564086-4	chr8	109563590	109564590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	1771.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	5.02868613555341	5.22313307741056	4.91631264545486	5.28238564336464	5.4710706346965	5.26745657106982	0.565133100081696	0.120834564190247	0.464924053848477
Merged-chr16-91871220-2	chr16	91870720	91871720	+	916.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	60410.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.24773845318866	5.93681008745934	6.08157217677373	5.90640096849716	5.96875071255699	5.66766598468063	-0.401335990372582	0.195754030394855	0.583438527663774
Merged-chr6-29270296-2	chr6	29269796	29270796	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2192.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	6.46831523587994	6.20917632540917	6.32441858030885	5.96556995796031	5.40865461993853	5.84170489185643	-1.0169869385421	0.00182819800995906	0.0288161962516904
Merged-chr15-64059229-4	chr15	64058733	64059733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	531.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.78825097262878	7.94448697264543	7.93181191376697	7.65958313172004	8.14328625584619	7.82071455300751	0.0120565169104814	0.960355650707063	0.990380695859216
Merged-chr3-59153094-2	chr3	59152594	59153594	+	873.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045641, exon 1 of 1)	non-coding (NR_045641, exon 1 of 1)	398.0	NM_001287119	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	5.24670400620777	5.58106103778829	5.62593243266261	5.55315263369093	5.6675336089196	5.66145768828201	0.261642918281774	0.436264343954155	0.799472869647494
Merged-chr13-111949074-2	chr13	111948574	111949574	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81138.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.78507887724655	2.82936028332114	2.75832758890198	2.74929956329024	2.66078210531249	3.06596918174745	0.189500080228447	0.7976022277846	0.951799370596145
Merged-chr11-87639338-4	chr11	87638837	87639837	+	932.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045527, intron 5 of 5)	CpG	22173.0	NM_001045527	327992.0	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	4.71657046468404	4.5856669072534	4.83682111551409	4.56419206603028	4.26293508040721	4.47471884131234	-0.6819616809584	0.114464459437428	0.451948312653958
Merged-chr1-45795365-7	chr1	45794842	45795842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028599, exon 1 of 21)	5' UTR (NM_028599, exon 1 of 21)	176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	7.34443818096738	7.31640391395658	7.17679592945333	7.37783841720231	7.53713127144915	7.15840239376858	0.135074840893025	0.580236048052767	0.87276422265422
Merged-chr4-122853813-4	chr4	122853291	122854291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 6 of 8)	intron (NM_008917, intron 6 of 8)	17564.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	6.86833799732282	6.86230329725059	6.49981063838734	6.59063978646724	6.66293248197233	6.80809925560476	-0.124318640562831	0.644774474250773	0.900291423062745
Merged-chr5-30922751-2	chr5	30922251	30923251	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310524, intron 1 of 8)	intron (NM_001310524, intron 1 of 8)	1192.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	4.20298630519186	3.89872229118353	4.5068361808749	4.33366594290143	4.71516291367143	4.36452976539932	0.713338815835867	0.154694399664401	0.52390421792532
Merged-chr10-51422441-1	chr10	51421941	51422941	+	1000.0	f0_balb.idr	Intergenic	RLTR13D3|LTR|ERVK	-58171.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.88022893478351	4.99028174942734	4.87885191223449	4.70247001340714	4.54926073297363	4.87112634769392	-0.496748617008816	0.212188583872524	0.604608851683617
Merged-chr18-70618717-2	chr18	70618217	70619217	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	MTC|LTR|ERVL-MaLR	50425.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	2.36200064302576	2.58708535967427	2.83661719390715	2.68319622060423	2.47648355905574	2.73284205716862	0.14985371565695	0.854966692396296	0.966038421653227
Merged-chr11-95841531-4	chr11	95841074	95842074	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284393)	promoter-TSS (NM_001284393)	-721.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.33937313812117	7.19409433047385	7.35823990720338	7.88453497631303	7.79945694481698	7.26374853986308	0.568845526306034	0.0314918360408736	0.214995389050641
Merged-chr1-160211842-4	chr1	160211359	160212359	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	1033.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	6.83123260060508	7.50039318060771	7.03957570409578	6.74582916904558	7.08803381152112	6.62369472099907	-0.482008184875186	0.117039257762939	0.456826138167842
Merged-chr1-165661908-4	chr1	165661397	165662397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-27356.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.46895725475278	7.27364966567201	7.26067993730963	7.24896203974549	7.52432597654758	7.14593864197257	-0.0213925062606542	0.931680064402729	0.984929477721491
Merged-chr4-53089148-2	chr4	53088648	53089648	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	70747.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.57837563380946	3.10594429781379	3.66217062966633	3.37351044033129	3.22905825730082	3.73108311905239	-0.0427286014256656	0.948836518094911	0.988169196639905
Merged-chr7-35712044-3	chr7	35711466	35712466	+	848.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178704, exon 12 of 19)	exon (NM_178704, exon 12 of 19)	42488.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	4.21661722031763	4.42491945525411	4.80509538761019	3.6570391352387	3.45770101392016	3.80251558087197	-2.71366128902262	2.4880721810542e-06	0.000121139561170953
Merged-chr13-3769598-1	chr13	3769098	3770098	+	742.5	f0_balb.idr	Intergenic	Intergenic	34720.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	2.64346265249335	2.88688601281227	2.86092088897644	2.67370091341683	2.53136492633063	2.68983355142177	-0.937186699727761	0.218239090104717	0.612414823722149
Merged-chr3-105894848-4	chr3	105894316	105895316	+	965.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-9605.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	7.96179294347778	7.93480785676102	7.7534088845843	7.96257735457933	8.21666957437689	7.902525054817	0.213210342309958	0.348469965367746	0.736318567721867
Merged-chr3-36065148-2	chr3	36064648	36065648	+	611.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172678)	promoter-TSS (NM_172678)	-831.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	4.37256741252795	4.30896683648097	4.26613859836582	4.4689948611213	4.68503864020938	4.95810170631064	0.970563479874773	0.0294230301403219	0.20627108365624
Merged-chr16-30922791-4	chr16	30922283	30923283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158649.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.17302557592107	5.28456093654513	5.33681073127135	5.47763515755889	5.29115171336923	5.39993412001184	0.249984770473339	0.465487261526597	0.817020164214671
Merged-chr5-121593634-4	chr5	121593139	121594139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001308450, exon 1 of 11)	5' UTR (NM_001308450, exon 1 of 11)	185.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	7.30131452840204	7.52760236682999	7.21304907974345	7.36898476402449	7.5006102236729	7.19636800867886	0.0123517753918248	0.960079339048397	0.990335445597503
Merged-chr9-123935580-4	chr9	123935073	123936073	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33119.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.35693959077275	6.19290025593682	6.57576061900177	5.92622863629167	6.08961305446618	6.32524173961168	-0.434052828263856	0.149649820634502	0.516117590626348
Merged-chr1-75218580-6	chr1	75218081	75219081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313723, intron 1 of 3)	intron (NM_001313723, intron 1 of 3)	713.0	NM_001313723	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	6.99740895953294	7.16147480887578	6.49032246983806	6.05733083638468	5.63354056816661	5.71118784688354	-1.82436584079759	2.21815685023992e-08	1.86244596563838e-06
Merged-chr11-110373227-4	chr11	110372729	110373729	+	783.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1b|LINE|L1	-25873.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.77711873886122	5.03450160606107	4.80965104119945	5.10944732213564	4.96398302225671	4.98843621266827	0.297106226612577	0.438434392641845	0.800536502226035
Merged-chr1-55029012-4	chr1	55028524	55029524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1546.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	7.76629374419832	7.85227207935444	7.78637807526576	7.79706843293887	7.91722351739153	7.79201700838103	0.0528954241737742	0.804682675042906	0.953651704501661
Merged-chr15-90323443-4	chr15	90322991	90323991	+	965.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30219.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	5.3514281516198	5.24980607894444	5.1924463665043	5.31092720015431	4.95210535825082	5.0113074015255	-0.347768106165899	0.34432678831197	0.732980075743821
Merged-chr11-103032053-2	chr11	103031553	103032553	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	3510.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	5.5791704625682	5.19271493173417	5.39307929350431	5.23583151494027	5.14290045441518	5.06209563947177	-0.495100587585886	0.171072546430523	0.549046475471744
Merged-chr11-22818601-4	chr11	22818080	22819080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41155.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.53561342594958	5.63293270689925	5.55149205505772	5.45939440898756	5.47521965569251	5.43919884815327	-0.221397595606275	0.492380539301698	0.83104217378051
Merged-chr9-44267084-4	chr9	44266598	44267598	+	901.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	1089.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	5.07230976522821	5.08620339583955	5.25969349002037	5.15083568846498	5.35157289671794	5.19530475806103	0.21960496218838	0.5383965357183	0.855152975815533
Merged-chr5-146768956-4	chr5	146768458	146769458	+	643.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011669, exon 2 of 9)	exon (NM_011669, exon 2 of 9)	25998.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.74169369349126	5.61018952599097	5.6907129428501	6.06664630047743	6.2233364271163	6.11450893813452	0.808141707910658	0.00650556389522806	0.0740918369277493
Merged-chr15-86169241-4	chr15	86168746	86169746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16482.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	9.1003856893576	9.25831964158059	8.77676179873162	8.96592750802508	9.33168819235064	8.73578996939323	-0.0319764740935222	0.90013560260875	0.976728292075907
Merged-chr7-67442523-4	chr7	67442028	67443028	+	998.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-69670.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.40986089971458	5.70715153623917	5.78124289461079	5.46788890401417	5.5655068566967	5.76947879696409	-0.0677753429671625	0.840272520828434	0.962819298477451
Merged-chr11-17013139-4	chr11	17012632	17013632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4414.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	3.35471372603925	3.36663584637522	3.0878684195739	3.12630180035397	3.33165676098502	3.44992180653968	0.101109558866073	0.875615072666536	0.971054644903929
Merged-chr16-91597802-4	chr16	91597305	91598305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030018)	promoter-TSS (NM_030018)	-125.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	6.2647648525026	5.60376188330306	6.02724435520101	6.27904668394951	5.7249886968176	5.46740165968817	-0.207165997234175	0.595184841523543	0.879394612218161
Merged-chr5-64853438-2	chr5	64852938	64853938	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49915.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.7436719379182	4.68375215957622	4.93648520904527	5.19328247831463	4.76186028486105	4.77709446565427	0.319440090062585	0.436833987583614	0.799681606793859
Merged-chr19-53476985-3	chr19	53476482	53477482	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12186.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.25822663585648	3.16867345033048	3.14148164827398	2.74441023961145	2.82641531017888	2.78250542826097	-2.03222546577746	0.00588769079460629	0.0688452748225969
Merged-chr13-5824384-4	chr13	5823883	5824883	+	871.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33709.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.71092527857891	3.65738235844689	3.70266264348318	3.49923184203137	3.19649779068958	3.27081139025997	-1.37028829270115	0.0235958834709362	0.180108822296088
Merged-chr3-103805395-4	chr3	103804903	103805903	+	836.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2274.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	5.18028034436398	5.54720309682946	5.65402544863106	5.22017796335064	5.45708623614211	5.41531937547815	-0.192130456312553	0.593143693101371	0.878410931874355
Merged-chr1-123905108-1	chr1	123904608	123905608	+	609.0	f1_balb.idr	exon (NM_199021, exon 2 of 26)	exon (NM_199021, exon 2 of 26)	140451.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.62307335502413	3.62375205204871	3.58724724340219	3.32343169279537	3.49696450704914	3.65707640438021	-0.421728571077156	0.463881430659903	0.816038286358001
Merged-chr15-9123206-4	chr15	9122718	9123718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	17236.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	6.02551875366412	6.34472831716956	6.27821431527389	6.2643396642789	6.31358487125197	6.1519836974031	0.0473313535840925	0.869426710561386	0.969788171765313
Merged-chr1-173732860-1	chr1	173732360	173733360	+	790.0	f0_balb.idr	intron (NM_001204910, intron 3 of 7)	Lx7|LINE|L1	8949.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	3.93836722217516	3.79404627510291	3.87649270886556	3.58190929345219	3.28302984488966	3.94514373454454	-0.823679419375322	0.172068649507511	0.550630266449541
Merged-chr10-8519042-4	chr10	8518547	8519547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177387)	promoter-TSS (NM_177387)	-222.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	7.31338796391269	7.42933788265828	7.03515168834361	7.09522339697192	7.34618550222839	7.26957517217203	-0.0524853286307498	0.835011104873831	0.961451138529569
Merged-chr17-15812596-4	chr17	15812083	15813083	+	906.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	14003.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	5.15651818372275	4.67465500418371	5.12091019339654	5.18540362752767	5.53177678842432	5.34449112594324	0.756746180917487	0.0532262736237687	0.295751195809548
Merged-chr2-52742370-4	chr2	52741883	52742883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-234.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	7.77837941096572	8.02726883968745	7.78379836912129	8.08831358635611	7.81431110896527	7.52752748557729	-0.0499362273855325	0.843366362374609	0.963409871508
Merged-chr10-76237941-4	chr10	76237452	76238452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126571)	promoter-TSS (NR_126571)	-87.0	NM_133182	15468.0	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding	6.36606636123266	6.46195236919247	6.05071900342182	6.10322161827396	6.24576467077639	5.91503857710547	-0.350280052377722	0.248315039040269	0.645459303628836
Merged-chr1-93124537-1	chr1	93124037	93125037	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	3.52042053109475	3.48098694513718	3.36431529364294	3.65630537284761	3.35881015924743	3.4939145880214	0.166903231878318	0.777126013380675	0.945018349303776
Merged-chr11-103101626-4	chr11	103101125	103102125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025988)	promoter-TSS (NM_025988)	33.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	6.1292015746379	6.6688581470685	5.7174608184714	5.41534327882125	5.31920808217179	5.19318731268801	-1.67007808358218	1.23125713457701e-05	0.000479412464454301
Merged-chr14-21075269-2	chr14	21074769	21075769	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-883.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.54538810292027	4.73812478844596	4.66356644767863	4.38745624279625	4.55995707101079	4.24779404695463	-0.578691343182959	0.188471551323029	0.574089449187164
Merged-chr2-124574115-8	chr2	124573627	124574627	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-36169.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.83584945403405	4.71982525345947	4.6596353293387	4.71910799015392	4.50797403809468	4.76510193271343	-0.198863592994834	0.626876349652406	0.892975730763041
Merged-chr9-22388095-3	chr9	22387583	22388583	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	1123.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	3.44439930301218	3.62840407275745	3.27782357899926	3.51475987446582	3.56188165496625	3.7373156560876	0.494051048995552	0.408025305896008	0.781926100186554
Merged-chr8-84639429-7	chr8	84638921	84639921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 47 of 47)	exon (NM_007578, exon 47 of 47)	23431.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.57728669943906	5.69639587950873	5.77394738589084	5.8108064437686	6.02769394259205	5.62019348721895	0.295641389020381	0.359235026976321	0.745440547165336
Merged-chr19-47508877-4	chr19	47508393	47509393	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 8 of 9)	intron (NM_175360, intron 8 of 9)	-4089.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	4.4284954039656	4.17796300755533	4.39657736912328	4.02529099714761	3.62446965360531	3.68242929148737	-1.63711739662078	0.00225252033047698	0.0338195076972805
Merged-chr10-44601792-2	chr10	44601292	44602292	+	784.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143044.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.52788209386731	6.34974345956644	6.50394486269732	6.57530207839466	6.54431770160679	6.52807626784628	0.144622891662428	0.581737565266687	0.873425292899358
Merged-chr18-79622468-4	chr18	79621974	79622974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-424421.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.96883031160448	3.96550922452362	4.15914261419718	3.96691282861477	4.09696130117553	4.26862564008924	0.245114021234798	0.61702590764764	0.888686351765977
Merged-chr13-112661247-6	chr13	112660703	112661703	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	437.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	5.67227973350425	5.74048841512233	5.66615265316961	6.10889548990666	6.25159618267465	5.7010648856555	0.637170528486011	0.0487749589003545	0.280455171044206
Merged-chr10-96408038-3	chr10	96407523	96408523	+	777.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181816.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.55342034341897	3.54498754612234	3.7071410434557	3.55937423733782	3.9286321418335	3.56322630999229	0.364805407787135	0.524318942715573	0.848650426908011
Merged-chr19-5473286-2	chr19	5472786	5473786	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1404.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	4.58049095805148	4.52654386845109	4.67020870053919	4.49552585643104	4.73807026997543	4.91663729779327	0.31620774464676	0.451652785088505	0.809233899859178
Merged-chr16-35844125-4	chr16	35843653	35844653	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 12 of 16)	intron (NM_001039530, intron 12 of 16)	27229.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	3.51796757176867	3.22442244327728	3.61048521983522	3.61582286031783	3.37819427861547	3.72991640453403	0.435787692538002	0.473382958449772	0.82090428702971
Merged-chr10-14085997-4	chr10	14085470	14086470	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119591.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.75345180068323	5.59940242482128	5.4224473502256	6.06484801292635	6.02030420373824	5.16413034233888	0.3970325903036	0.31682234994618	0.710777474639496
Merged-chr15-34047145-4	chr15	34046614	34047614	+	993.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35605.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	5.97073774479234	6.14663042258973	5.82125232823582	6.23400152029699	6.12297238378375	6.10061216552217	0.270407582275902	0.360482506420396	0.746683637306224
Merged-chr6-72549139-4	chr6	72548669	72549669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271395)	promoter-TSS (NM_001271395)	-104.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.41256746804605	6.54657380813708	6.78985631835522	6.00219287336147	6.08554734822193	6.26974769263504	-0.769944153944164	0.0075941302085443	0.0829085670926008
Merged-chr18-70531485-4	chr18	70530976	70531976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1155.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	7.03948829239614	7.46394894647687	6.9547183866885	7.96596461163359	8.23801697900796	7.67195098007081	1.16695891945015	3.29437536348027e-05	0.00111520905306943
Merged-chr5-64295947-2	chr5	64295447	64296447	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	65590.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.1579877210103	4.64568648129258	4.84604022634006	4.29644915385774	4.25531254375631	4.38078214891613	-0.673355525144495	0.162836117806117	0.536188662408322
Merged-chr14-103374960-3	chr14	103374474	103375474	+	728.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28174.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.49050678411094	3.3279688475242	3.21716177872615	3.27652363103805	3.4872637687025	3.40657372766624	0.156048482816548	0.799509024880425	0.952248176414355
Merged-chr10-121470391-3	chr10	121469888	121470888	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	RCHARR1|DNA|hAT-Charlie	5862.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.76750581504407	5.71052625120185	5.38800200992601	5.64953575592957	5.51407858140607	5.21309653213879	-0.303438070004759	0.388208790454398	0.768191594174986
Merged-chr14-101640528-8	chr14	101640040	101641040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033132)	promoter-TSS (NM_001033132)	-69.0	NM_001168592	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	7.09498514126111	7.25362336964169	6.9368658586111	7.14961696351422	7.37903740189065	6.98075350916605	0.122688493127056	0.63661359860956	0.89720767300409
Merged-chr6-86684515-4	chr6	86684020	86685020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025665)	promoter-TSS (NM_025665)	-29.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	6.70459311155519	6.88918494284499	6.64233431005951	6.57365430377702	6.72657531543327	6.3072581061617	-0.306781711797826	0.269078364333538	0.666214554689947
Merged-chr11-99230496-5	chr11	99230029	99231029	+	970.5904539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020618, exon 1 of 11)	5' UTR (NM_020618, exon 1 of 11)	488.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	8.00839212584242	8.48502875056228	8.08252419938331	8.28080721960419	8.05447723894748	7.91036631004543	-0.169501848820904	0.498075766142251	0.833856267944725
Merged-chr17-24742261-6	chr17	24741755	24742755	+	927.4398189999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346668, exon 4 of 4)	3' UTR (NM_001346668, exon 4 of 4)	5662.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	5.14224921667348	4.97262369215765	5.34013759259907	5.42755068410036	5.46683419984354	5.65029388898701	0.722644071824616	0.0407044849380073	0.251590337019958
Merged-chr7-102018843-2	chr7	102018343	102019343	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-688.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	8.11587449955437	8.192395236698	8.39259882061452	8.15170954704948	8.39769116570116	8.14687131221041	0.00993557752773976	0.964359612779722	0.991466661735029
Merged-chr2-132103564-4	chr2	132103074	132104074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	41534.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	8.80672195742869	9.12772851544176	8.58741808627903	8.69008891068149	9.29267297594545	8.57813403633951	0.0512147845697335	0.855251336516589	0.966123042475177
Merged-chr10-95324100-4	chr10	95323597	95324597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330175)	promoter-TSS (NM_001330175)	40.0	NM_001330141	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	7.8176347654848	8.00269195910607	7.78774205321802	7.80183970516081	8.15434078243161	7.84409228163272	0.105157716228707	0.653631365777427	0.903461343339179
Merged-chr13-106836349-4	chr13	106835844	106836844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	100614.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	4.42842451781941	4.56667347082866	4.14535254387033	3.80065673598775	3.96067361836537	3.79212621962141	-1.55275246836487	0.0026267673348013	0.0380449184324014
Merged-chr14-25745966-4	chr14	25745417	25746417	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	22939.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	6.16823209379813	6.02982147123895	6.17055375200891	5.91745108233447	6.10887944490471	5.78517277555379	-0.284538100797994	0.342987913284011	0.731856773485056
Merged-chr10-68842484-4	chr10	68841892	68842892	+	883.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118646.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.76435767474915	4.9330358502422	4.5355342434844	4.69748341930741	4.94016794164454	5.25226446816772	0.468438974083893	0.273428782757258	0.670659339634344
Merged-chr11-114729026-2	chr11	114728526	114729526	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 1 of 12)	intron (NM_001034878, intron 1 of 12)	1614.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	2.37062250232035	2.3739171410218	2.59724291859827	2.47125540643126	2.33322717959313	2.67044170965376	0.280940342616246	0.732248493656952	1
Merged-chr2-156547592-4	chr2	156547038	156548038	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164818)	promoter-TSS (NM_001164818)	-38.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	6.67801243251925	7.01286113175314	6.89392361714301	7.00702612367992	6.79532072091343	6.58648099628137	-0.0863724665498126	0.751960356576559	0.938030338790992
Merged-chr6-65150964-3	chr6	65150471	65151471	+	744.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6241.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	4.39661467179697	4.97754053281968	4.73071143178852	4.54046825447804	4.57550995521513	4.55558506548793	-0.403021545043276	0.363623286633357	0.749272341799073
Merged-chr11-98774522-2	chr11	98774022	98775022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	855.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	9.02335600239521	9.06321973848908	8.70749145518179	8.7909932939764	9.22960907604514	8.68857525048414	-0.0174299668461267	0.943599724757113	0.987453245208137
Merged-chr4-43287553-4	chr4	43287040	43288040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177195, intron 2 of 28)	MTE2b|LTR|ERVL-MaLR	20381.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.82465649414733	5.91361820448887	5.7667432436076	5.74693884935976	5.8364266774237	5.63919873056438	-0.160987920829515	0.600424839030654	0.881675637625742
Merged-chr1-88214772-2	chr1	88214272	88215272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201645, intron 1 of 4)	intron (NM_201645, intron 1 of 4)	2813.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.54652172347163	4.25459415454335	4.06618732736217	3.66718140387851	3.82101935721513	4.64014791648954	0.401893630175205	0.685397559138985	0.916264475254709
Merged-chr17-24037468-4	chr17	24036956	24037956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175440)	promoter-TSS (NM_175440)	-787.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	3.99187062768839	3.6470443572072	3.71430860555651	3.38830474915587	3.24536266714566	3.51713424792983	-1.52569342359518	0.0108088142498306	0.106171995956492
Merged-chr3-146752960-1	chr3	146752460	146753460	+	708.0	f0_balb.idr	intron (NM_001164200, intron 3 of 9)	intron (NM_001164200, intron 3 of 9)	17278.0	NM_001164198	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	4.05415405392563	4.01357113748204	3.86203370806797	3.99994641177977	3.8233523692274	3.77269136205631	-0.350932088739825	0.493801138679085	0.83163003018319
Merged-chr2-157424619-2	chr2	157424119	157425119	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	CpG	326.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.49984013458623	4.80288820808869	4.90723838500502	4.83347899125646	4.50074422454105	4.60719399208678	-1.02438608041965	0.0219342635808142	0.171710057769535
Merged-chr4-116597601-4	chr4	116597118	116598118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029450)	promoter-TSS (NR_029450)	12.0	NR_029450	654318.0	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	7.11402784526058	7.43044247742766	7.19846593945956	7.05985184023144	7.04553248517825	7.01345330582723	-0.327559195838071	0.18085144091739	0.562952627879773
Merged-chr15-61998997-4	chr15	61998514	61999514	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13673.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	6.09765438021893	5.57238010657971	5.64246270294047	5.42870541979795	5.05640679807833	5.41701631111292	-0.937364591073347	0.0108373582257962	0.106364107484319
Merged-chr19-29463819-4	chr19	29463343	29464343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	52924.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	7.10429322012192	6.92124652129568	6.73927540538009	6.87831347878963	7.11718370762462	6.57280735826046	-0.0738218542965671	0.794564103937189	0.950789374718213
Merged-chr14-47365242-4	chr14	47364735	47365735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8625.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.25515584388023	6.44041551817348	6.28602866577131	6.45084401233502	6.66682731293516	6.49833884306959	0.34825481528651	0.200940008360716	0.590263934748233
Merged-chr16-4679800-4	chr16	4679291	4680291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-71.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	7.65566456615561	7.8316938473747	7.5176432794667	7.75273038315892	8.29585232081032	7.48967406730454	0.322076242744913	0.263110811044056	0.661082058032528
Merged-chr9-120826400-3	chr9	120825864	120826864	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88886.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	6.92436346060763	7.01124694330117	6.40205926600328	4.46172374296654	3.85230017668139	4.65608938408026	-5.63614386931838	2.4431624578912e-07	1.56497815085612e-05
Merged-chr11-117847636-4	chr11	117847143	117848143	+	884.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1594.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	6.42900113873507	6.08320147027717	6.64610990700853	6.23494107407427	6.50744254713313	6.59443964827206	0.0899250933889321	0.768979116041779	0.942983923980385
Merged-chr7-56131744-3	chr7	56131240	56132240	+	840.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360080, intron 24 of 92)	intron (NM_001360080, intron 24 of 92)	81351.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	3.74934808329014	3.85810833607495	4.01943876573181	3.87688620060931	4.07780004685524	4.04090739425383	0.396243152327113	0.436368972199265	0.799472869647494
Merged-chr6-129373202-2	chr6	129372702	129373702	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12301.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	4.39214897522655	4.53826849471309	4.45973060873349	4.06039123017582	4.29978669802464	4.21749780184378	-0.700363490362847	0.125495424871198	0.474078843870859
Merged-chr10-77533510-2	chr10	77533010	77534010	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	3162.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	4.28559023453972	4.29930845744946	4.89305297132449	4.76580938255715	4.73920283647815	4.66841556870746	0.520356456159874	0.255523813054068	0.652637143105991
Merged-chr9-65523565-2	chr9	65523065	65524065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56522.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.79808329451296	4.09475440589229	4.39315903629241	4.15860732766021	4.05117515256677	4.16363841734534	0.0412443900127254	0.935980480518732	0.986014061025137
Merged-chr11-97704016-2	chr11	97703516	97704516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011971, intron 2 of 5)	intron (NM_011971, intron 2 of 5)	582.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	6.54744942846341	6.2596914782189	6.62642985334918	6.19085129383368	6.53253312029029	6.50267741654736	-0.100330684778749	0.730065879298783	0.930736680834301
Merged-chr11-49855418-1	chr11	49854918	49855918	+	840.0	f0_c57.idr	intron (NM_016961, intron 2 of 11)	intron (NM_016961, intron 2 of 11)	8667.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	4.04849149366633	4.29865406686078	4.59080641691298	5.16817092741859	4.99531098888341	4.85419689798139	1.6694051607322	0.000177329046341368	0.00453816947370279
Merged-chr10-99393254-4	chr10	99392764	99393764	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130033.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.19276706834672	3.16986670065419	3.19160785564408	3.49390061986275	3.24918415187042	3.26452471802649	0.638784940218381	0.30537809823614	0.70154336825049
Merged-chr17-5605130-2	chr17	5604630	5605630	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112530.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.75122023580379	6.58201531956163	6.49456941691239	6.43555045528775	6.38890825494465	6.23977252196643	-0.413472097919601	0.126987687318089	0.476299576882446
Merged-chr11-60776244-6	chr11	60775711	60776711	+	786.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	1154.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	7.35166249500864	7.51596820170986	7.60645345022865	7.39790523404362	7.85847003874167	7.78486594749536	0.298994328103342	0.232445405754355	0.628761339174128
Merged-chr1-165677323-2	chr1	165676823	165677823	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	30771.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.41170106295668	3.5587345655116	3.82609197987791	3.65323165822959	3.57259678806337	3.98506593877304	0.468895891336149	0.421189949707868	0.790169173117766
Merged-chr2-133552165-4	chr2	133551662	133552662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007553)	promoter-TSS (NM_007553)	3.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.28949630246042	5.06536910495722	5.31761015847948	4.86487846510616	4.14198602088596	4.2657209817461	-1.72447549462226	0.000306768195404852	0.00710268690541054
Merged-chr10-93487573-2	chr10	93487073	93488073	+	865.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1195.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	5.40480080635817	5.13505355879809	4.51509862036104	4.21308671736999	3.95802457044977	4.00978871174985	-2.56077766045482	5.43051967026642e-07	3.15767072483248e-05
Merged-chr7-101537400-2	chr7	101536900	101537900	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18402.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.08578282797625	6.16112053572677	6.14594952801875	5.86819351571653	6.09637969007352	6.03190961198961	-0.214885722329502	0.458011559227019	0.812780596083952
Merged-chr7-136321541-4	chr7	136321040	136322040	+	921.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27875.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.96685658202359	5.12151363874342	5.25292503200991	5.22953438284121	5.38934462717338	5.08417182880749	0.287935559553355	0.431815041914562	0.797102108819786
Merged-chr11-87436443-3	chr11	87435920	87436920	+	812.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	8829.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.00236854644527	5.31681651466102	5.17479974820754	5.92717245744607	5.95822169818407	5.3072623103607	1.18951366271005	0.00172225257390703	0.0275571517499599
Merged-chr10-26859183-2	chr10	26858683	26859683	+	933.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 4 of 14)	intron (NM_176837, intron 4 of 14)	86671.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.64386308885579	6.09792439156689	5.66620511434712	6.27125810430114	6.53486080578298	6.01989768422046	0.807487794698048	0.016127690732718	0.139612244120683
Merged-chr2-32499479-3	chr2	32498945	32499945	+	948.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-35914.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.17467242408905	4.90109944474465	4.9490143493259	5.03670918676247	4.73313298709104	4.78523612079153	-0.348890008407363	0.375979082687813	0.758951282467405
Merged-chr7-80402202-4	chr7	80401687	80402687	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081454, intron 1 of 15)	CpG	625.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	7.17974343486444	6.89972632623341	7.273212922594	7.46340517204936	6.83544819513114	7.14310261471558	0.0728605531287942	0.799476219810135	0.952248176414355
Merged-chr8-120490934-3	chr8	120490433	120491433	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	2067.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.37600083310178	4.17517794163464	4.16269109279365	4.33830570032026	4.11166490176926	4.08490381110771	-0.167452551568567	0.723941393295983	0.929178878081464
Merged-chr7-35066840-4	chr7	35066337	35067337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10271.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.67658184123174	6.4345668847406	6.23994535097559	5.95686184524689	6.12340032955971	6.23834483395635	-0.603958339855703	0.0409710531773599	0.252489956508796
Merged-chr6-92989242-2	chr6	92988822	92989822	+	662.75	f0_balb.idr|f1_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48740.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	4.39244249833366	4.89904804708695	4.46861891143414	3.58009835893173	3.65474698141253	3.55893629742473	-3.1494934020955	1.63902729542289e-07	1.10429298135666e-05
Merged-chr13-24800750-4	chr13	24800224	24801224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-933.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	8.26988461571682	8.11084912080073	7.78915311167439	8.13555250086272	8.33240180788778	8.09152238490537	0.162478132234921	0.495906566448122	0.832796350630003
Merged-chr10-30772459-1	chr10	30771959	30772959	+	608.0	f0_balb.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	30867.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.79735787564433	5.07329616095656	5.05966227061169	4.76514090469285	4.48185488385402	4.51369539662692	-0.890725190691909	0.0310270037485099	0.213194074973539
Merged-chr1-180196047-4	chr1	180195516	180196516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359268)	promoter-TSS (NM_001359268)	4.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	5.65027321738878	5.44235805408856	5.29649307587602	5.67379023915256	5.54542825982732	5.32790474379118	0.0959306505039996	0.781550549172852	0.946246819163951
Merged-chr4-141636832-2	chr4	141636332	141637332	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 6 of 18)	RSINE1|SINE|B4	-12998.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	4.10966060392641	4.05172889336387	4.13892691450381	3.9535608434091	4.04964258836975	4.33603719534038	0.0452774681528321	0.926105040606649	0.983305773102619
Merged-chr5-100582629-4	chr5	100582133	100583133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.25895576329391	4.49393637703793	4.86694547302623	5.49377267947309	5.46897218257415	5.1226003878545	0.941987831771342	0.0295485601697986	0.206785247654214
Merged-chr7-126487855-2	chr7	126487355	126488355	+	799.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172745, intron 2 of 9)	intron (NM_172745, intron 2 of 9)	500.0	NM_001163713	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	6.21354074485179	6.43786728101367	6.5469288899085	6.36133717533014	6.31504349104535	6.78889606403119	0.152648503959594	0.609166289812288	0.885060185419642
Merged-chr5-25081744-4	chr5	25081252	25082252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	18890.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	4.29538353373757	4.18681648138832	4.22718244601152	4.01604736190249	3.50655832690436	4.01787477839732	-1.12447231977687	0.0387043816042884	0.243978347312851
Merged-chr16-24902589-4	chr16	24902092	24903092	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-157047.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.80442395327543	4.8486318015358	4.65298401993506	4.1302448929699	4.4159939236559	4.17939100401514	-1.28966062622067	0.00442816254816657	0.0561845912332791
Merged-chr16-59559203-4	chr16	59558713	59559713	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3461.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	6.41521050936039	6.5489856949651	6.20261252903297	6.70719789983231	6.98278327078429	6.69818554316127	0.640185403458367	0.0213856393403658	0.168780828818472
Merged-chr8-35707095-3	chr8	35706591	35707591	+	757.377747	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118071.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.87336290577828	2.93805856935795	2.80152919618626	3.35410166359448	3.29030075337231	3.4196336756813	2.19602863224608	0.00201783786849228	0.0311734595918131
Merged-chr2-164861645-2	chr2	164861155	164862155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3947.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	7.95263556761504	8.00963353105483	8.13268587172201	7.90277204617355	8.33145908243741	7.89563149582085	0.0523247573750596	0.827679875522146	0.959499015069944
Merged-chr8-70644237-3	chr8	70643763	70644763	+	731.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-11807.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.14351790912573	3.06481797435951	3.01417035869261	3.60857864487579	3.51994056301531	3.33954943166428	1.73444671469533	0.00756090818877882	0.0826712284588578
Merged-chr5-129864614-3	chr5	129864113	129865113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026445)	TTS (NM_026445)	14475.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	3.34600116019407	3.44022571762364	3.41761135469521	3.00644934194025	2.82379119183466	3.15360604677113	-1.87256211333321	0.00671565632662258	0.0758101114673195
Merged-chr10-61134230-4	chr10	61133711	61134711	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	RLTR17|LTR|ERVK	13473.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	5.56069738793605	5.638552746853	5.82784085659791	5.25151063276178	5.64969819867628	5.4986510070353	-0.354946676656862	0.299417822436377	0.696192873450121
Merged-chr2-91082300-5	chr2	91081774	91082774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11959.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	8.37300967605893	8.44430694115172	8.1534752443682	8.21978717013244	8.49748277172573	8.1254039765438	-0.051123717939343	0.824020662386787	0.958461473318254
Merged-chr9-50563339-2	chr9	50562839	50563839	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-2071.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	4.43366299485963	4.46510149986278	4.62021186841946	4.64545575834441	4.68165574964179	4.60609952063698	0.355462834739379	0.391679653359471	0.77069538219803
Merged-chr6-116181014-3	chr6	116180518	116181518	+	718.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	RLTR34D_MM|LTR|ERVK	12356.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.73051078350315	3.58819997549613	3.89055389329853	3.63006006612797	3.41418368397331	3.55649839368087	-0.709858460608268	0.210875958912034	0.603161969426302
Merged-chr19-4191533-2	chr19	4191033	4192033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-486.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	5.68258785513949	5.79090381973984	5.08981685730832	5.56495694519829	6.09292784030774	5.74043535036969	0.466257483793051	0.229716116794529	0.625403875478165
Merged-chr14-121930774-2	chr14	121930276	121931276	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	L1ME3A|LINE|L1	-15002.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	3.72096340788084	3.48744936381915	3.71406153633308	3.34742135136548	3.51899761380696	3.35034715651637	-0.830318120952834	0.16177717299556	0.534903241209541
Merged-chr1-152697626-3	chr1	152697123	152698123	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-52928.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.63283259986957	3.5890633748283	3.49092198329495	3.46601734696029	3.66329884415157	3.5620498268707	-0.0196699720444736	0.97228704493122	0.993868590220018
Merged-chr6-91703496-4	chr6	91702987	91703987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	MIRb|SINE|MIR	19420.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.53014478998987	5.51971689167933	5.61209961535213	6.02290162312938	6.39943918328368	6.117395523639	1.14757564539031	0.000221930333478083	0.00544891684510012
Merged-chr1-74237080-4	chr1	74236606	74237606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	CpG	589.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	8.40564811351903	8.65306650137352	8.61637017546243	8.61256801035567	8.77365475334962	8.53320545752098	0.117767297780522	0.579106639082337	0.872437416842052
Merged-chr17-51220756-4	chr17	51220270	51221270	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41418.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	7.84256376755052	8.23153311184594	7.78102187208351	8.21342268995255	8.66024727924232	8.07382408124948	0.536570906192816	0.0475351208086924	0.276188976485558
Merged-chr10-69248796-2	chr10	69248296	69249296	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001252636, exon 3 of 11)	exon (NM_001252636, exon 3 of 11)	35602.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	2.79686623733646	2.79543365089944	3.33982824129018	2.96447869235339	2.84090553201801	3.40972600208112	0.396408561955684	0.605023434667754	0.883330817515343
Merged-chr6-113061704-2	chr6	113061204	113062204	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	B4A|SINE|B4	15402.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	5.99673099752703	6.15407569922948	5.90137820043492	6.36365337222819	6.3468472239484	6.33701722151003	0.536906095461832	0.0579886803952498	0.311117552281124
Merged-chr5-141013043-2	chr5	141012543	141013543	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12447.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	4.50597365109975	4.29292189169908	4.86232663909989	4.55508834613529	4.34354856766971	4.78919866568956	0.00406586806534818	0.993046972276764	0.998646946749805
Merged-chr4-11006115-2	chr4	11005615	11006615	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	1504.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	6.08301575535208	6.38832443070479	5.99017236659582	6.50754387145795	6.64451670036269	6.67575723437368	0.707420110519061	0.0141106151061197	0.127490421998706
Merged-chr11-46265093-2	chr11	46264593	46265593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 13 of 30)	MTC|LTR|ERVL-MaLR	29536.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	6.51954545126814	6.68746277118434	6.35251705815311	6.46982798837021	6.49427350598419	6.72371397388952	0.0401907668705819	0.88411612123736	0.973466734537782
Merged-chr14-55783314-9	chr14	55782752	55783752	+	884.815735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 2 of 25)	intron (NM_080435, intron 2 of 25)	820.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	7.44383948462345	7.70754803105744	7.42398854312495	7.71973802652945	8.1091540382659	7.59479870615084	0.433499510854188	0.0932061603906463	0.40657919757719
Merged-chr4-47080566-5	chr4	47080086	47081086	+	894.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11367.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	3.85993823194946	3.74128938657181	3.81826332586838	3.91250525509757	3.63574736407144	3.78562538708776	-0.090120473436439	0.865202337387823	0.968631249633983
Merged-chr14-66182773-4	chr14	66182268	66183268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	31056.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.20539551213494	6.04900214923557	6.13270604670294	6.59724816533776	6.82288336949268	6.14862960074742	0.716705920088765	0.0203688076429154	0.163421824930258
Merged-chr2-168574092-3	chr2	168573605	168574605	+	830.077759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	16260.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.048725225542	2.74443074497186	2.97222025151137	2.82921113108166	2.69715316709136	2.8043192666129	-0.778303434685401	0.285681483914901	0.683152802436807
Merged-chr14-87190879-4	chr14	87190389	87191389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49665.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.822395742471	4.19439359542942	3.96827327622932	4.32681241019543	4.23824977706558	4.32117510693453	0.798007115575804	0.104858380803701	0.432054705729044
Merged-chr16-13848538-2	chr16	13848038	13849038	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 13 of 22)	intron (NM_001039533, intron 13 of 22)	29287.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	3.07461410021658	3.50682721058332	3.56077367705547	3.44709821492247	3.28974399336253	3.41948688696717	-0.042074193617004	0.94761743461407	0.988008807662239
Merged-chr14-31385092-4	chr14	31384567	31385567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32610.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.33790017135003	7.17041963696779	7.20602572025996	7.37106609189994	7.45040953460964	7.25147559588111	0.184687190655229	0.42983977294534	0.795881257420857
Merged-chr17-34980764-4	chr17	34980286	34981286	+	889.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1068.0	NM_001110101	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.04954668563937	5.92988015568977	5.59398750376571	5.97508968444051	6.20861265669728	5.56539453974803	0.134342002778112	0.701698816302016	0.921463870335944
Merged-chr17-69221613-2	chr17	69221113	69222113	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	55593.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	6.39009754860885	6.51009294330175	6.57268323299292	6.54387263782213	6.74905002970201	6.77397569387733	0.324170750789017	0.21897129330633	0.613128894826908
Merged-chr4-10972808-1	chr4	10972308	10973308	+	585.0	f0_balb.idr	Intergenic	Intergenic	34811.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.19133137960578	4.06584500988258	4.29070681170732	4.75545674215732	4.51844320643141	4.57408277693304	1.14188130331118	0.0106015204385455	0.104694083873651
Merged-chr11-90240863-1	chr11	90240363	90241363	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-8613.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	7.16626555044197	7.1712583733973	7.11458864165359	6.71639246764654	6.62111165752204	7.06012731300014	-0.538080575454876	0.0381521130901858	0.241691763415713
Merged-chr16-20325517-3	chr16	20325035	20326035	+	982.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183158)	promoter-TSS (NM_183158)	-131.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	3.22032613964707	3.29052441918995	3.96908678196455	3.10059921806626	3.43357179279706	3.37251586413648	-0.819465703238387	0.238639875610025	0.635395563974238
Merged-chr10-83646542-4	chr10	83646036	83647036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	Lx8|LINE|L1	2128.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	6.00750158614798	6.0794198482415	5.96425257987602	5.47308596757454	5.53012958035878	5.78616467253188	-0.770788983343783	0.0130816113752219	0.121389369274906
Merged-chr2-170155644-4	chr2	170155136	170156136	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12961.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.52357266996587	6.40375142073199	6.61575917064683	6.65765237446825	6.93015201188449	7.05819415144743	0.594404338638103	0.0273406007411249	0.197063487829674
Merged-chr2-144720629-3	chr2	144720120	144721120	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-103046.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	3.50422749404612	3.56164567284112	3.5950589738525	3.52799977920863	3.15708761015494	3.61345826030158	-0.416912646422114	0.495803261473076	0.8327068966484
Merged-chr5-139727626-2	chr5	139727126	139728126	+	630.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	8707.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.42866401578933	6.31957475264739	6.56359625881899	6.85482576698409	6.80969579549889	6.93928209885215	0.684417882920964	0.00810870649275458	0.0869022732932926
Merged-chr7-101070566-4	chr7	101070060	101071060	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38215.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	4.57983027879551	4.28023009770817	4.46159896546351	4.68539984201436	3.76179475573813	4.56942893020901	-0.106504303488566	0.847702048154011	0.964318271116593
Merged-chr17-87459452-4	chr17	87458946	87459946	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12511.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	3.41525858926538	3.08326114401061	3.13120644088341	3.23750222373494	3.27215148971859	3.43174254169712	0.365535746489232	0.569719200492957	0.868895247713032
Merged-chr1-85809460-4	chr1	85808952	85809952	+	811.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	15435.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	4.06610122566232	4.37437458269094	4.14758921365054	4.14444676218935	4.21571255706481	4.16893593050461	-0.0806404662090776	0.865189406083776	0.968631249633983
Merged-chr8-109799474-4	chr8	109798964	109799964	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	20881.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	3.79510806437205	3.70008476180783	3.89665454238698	3.51980504234149	3.72181373544097	3.96455107003492	-0.175669388700147	0.750005890952599	0.937476275940627
Merged-chr2-124605528-4	chr2	124605023	124606023	+	726.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-4773.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.15146413969893	3.36856949522476	3.11384781939957	3.12025850568809	2.92827116694606	3.30091519941082	-0.435911488515622	0.516382781322196	0.844182059575175
Merged-chr2-165453506-4	chr2	165453014	165454014	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 1 of 12)	intron (NM_054055, intron 1 of 12)	19683.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	4.38746077478017	4.28184102899339	4.30702786152254	4.38651026790624	4.58265043475716	4.58719252810028	0.498712568608167	0.253398350270727	0.650824765543929
Merged-chr2-151009311-4	chr2	151008810	151009810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207204)	promoter-TSS (NM_207204)	88.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	2.6692851585928	2.4981292239546	2.72427851915778	2.49865403012368	2.59805186203178	2.73687038980278	-0.107542662388684	0.889243087643514	1
Merged-chr15-76660208-4	chr15	76659712	76660712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-4.0	NM_019396	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	7.07129494631792	7.21981698934381	7.11478392523724	7.08461400470298	7.26374683988751	6.70188612022665	-0.130550115197632	0.627557220937515	0.893330206932885
Merged-chr1-54798636-4	chr1	54798122	54799122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	127765.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.80290082356171	4.53055334906552	4.70715476928384	4.18599291576467	4.16837891635146	4.45569898695225	-1.06666421866482	0.0170048008301433	0.144913505476707
Merged-chr18-53934449-1	chr18	53933949	53934949	+	782.5	f0_balb.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	72336.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.43671616864558	4.8483648429957	4.71814422339096	4.16187987816376	4.16600061681659	4.28921737771732	-1.22814034027685	0.0070560778471942	0.0786289173040492
Merged-chr12-33040971-4	chr12	33040478	33041478	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 15 of 19)	intron (NM_001024478, intron 15 of 19)	51897.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.72788133553979	5.05397028787549	4.52798012104768	4.64844506997095	4.52854111166083	4.2604302947484	-0.715346909152857	0.116073498678072	0.454998053328544
Merged-chr13-104108701-4	chr13	104108156	104109156	+	907.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029447, intron 1 of 12)	intron (NM_029447, intron 1 of 12)	958.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	4.8646683452544	5.09565201881686	5.21164790927716	4.87975848231481	4.84925827938558	4.74988706618199	-0.496848511810101	0.200777472848604	0.59009897074588
Merged-chr1-107489831-4	chr1	107489342	107490342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21581.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	4.78921270737351	4.97073866758033	4.84613160840012	4.86532477879941	5.27601159443231	5.31350816622724	0.62536666041203	0.110246933170818	0.443567855291205
Merged-chr14-20846339-4	chr14	20845819	20846819	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9657.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.8811086468878	6.87898852324992	6.86308557765388	7.00965714900464	7.3314385848166	6.87685415802493	0.342233753656275	0.190339360214318	0.576601442268746
Merged-chr12-98746319-4	chr12	98745828	98746828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-640.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	6.23623941058157	6.68951567354195	6.09710088674619	6.61716627978174	6.73632008976202	6.35567694140743	0.334774894879077	0.285401858256777	0.682917350182106
Merged-chr9-57641137-2	chr9	57640637	57641637	+	607.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4516.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	4.96936995436994	5.18989153432707	5.63731672922142	5.46808438894483	5.54793505667698	5.45760811743261	0.416398012569753	0.267391811451181	0.664678416083957
Merged-chr11-106489098-2	chr11	106488598	106489598	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	4.68500848779281	4.23619364651458	4.00620326315622	4.13517143114143	4.151477157736	4.45287903844479	-0.266449439675998	0.604564666974723	0.88314896167691
Merged-chr6-116265790-4	chr6	116265287	116266287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-745.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	5.28105028724721	4.9909363016448	4.7548527114193	5.2908082030313	5.45092209577332	5.0635927294645	0.509346124977246	0.198913819575174	0.587343866831168
Merged-chr7-35118421-7	chr7	35117929	35118929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-864.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	7.45427438650495	7.90291302090057	7.61189201338812	7.40111595477056	7.52356971445441	7.55439986975581	-0.261680616219517	0.286502550330663	0.683725296730741
Merged-chr13-73801007-2	chr13	73800507	73801507	+	807.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 17 of 24)	exon (NM_011390, exon 17 of 24)	37310.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	2.39183358522129	2.42998511698842	2.62605007042077	2.39265608084434	2.28582903017884	2.87224000483589	0.314322665202001	0.715398557657934	1
Merged-chr9-47589340-1	chr9	47588840	47589840	+	556.0	f1_balb.idr	intron (NM_001025600, intron 1 of 8)	MTD|LTR|ERVL-MaLR	58988.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.80857240748919	5.89855363215784	5.42346520716292	4.25940659119508	3.78761333963998	4.42931916162047	-3.89528443092163	7.66388306496081e-15	2.07971115156732e-12
Merged-chr9-116137009-4	chr9	116136512	116137512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	38351.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.60832295062637	7.64672814810149	6.76385608249145	6.63209939719678	6.63434605446658	6.4556803827819	-1.26226365036984	6.75907179519177e-05	0.00203035684452822
Merged-chr13-43779182-4	chr13	43778658	43779658	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5954.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	6.69952169106627	6.16993678856442	6.43157543523662	6.36957038562144	6.3491480280367	6.21452232923031	-0.224158647859054	0.45231471796188	0.809370729412253
Merged-chr11-82781335-6	chr11	82780825	82781825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126067)	promoter-TSS (NR_126067)	216.0	NM_010716	16882.0	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	8.40975332991664	8.5047035395136	8.11370033294163	8.39205145270186	8.32817796713227	7.95696898704964	-0.157994388357023	0.514429586728153	0.843107848235413
Merged-chr2-172444436-2	chr2	172443936	172444936	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	3858.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	2.27605145724731	2.52379015625988	2.66847934329867	2.27315031062767	2.14317400619622	2.23638386049541	-1.95325336840412	0.0339031200067092	1
Merged-chr13-34645418-2	chr13	34644918	34645918	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	7263.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	4.00781408339272	3.9055126368382	4.37012061598742	3.7404101541432	3.50395104925187	3.92286741286044	-1.18309990164017	0.0340188877217748	0.225642520434378
Merged-chr11-115161861-5	chr11	115161434	115162434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-1407.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	7.50750794164948	7.1824540392373	7.31332297296506	7.43185835110719	7.71581022119992	7.28956728621067	0.232347722782555	0.363724645675264	0.749321188432902
Merged-chr3-79535786-2	chr3	79535286	79536286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	31893.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	3.70986084050267	3.79975537595614	3.85870620512728	3.72324615162873	3.4162297033575	3.78041020872219	-0.497801209014475	0.373149963058763	0.757035698205334
Merged-chr1-60975425-2	chr1	60974919	60975919	+	681.06665	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	6.30759275513054	6.41276945920565	6.67388553422089	6.23349792749303	6.42586674203616	6.41568823828633	-0.16757818689769	0.55258778755326	0.861802047246296
Merged-chr7-35124466-2	chr7	35123966	35124966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5173.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.00458868690698	3.73599316612815	4.02273839736036	4.04721590397518	3.60611314879263	4.2231674089102	0.155318333414217	0.780723438558308	0.946078518476608
Merged-chr3-105824405-4	chr3	105823879	105824879	+	818.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8812.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	5.95911998839925	5.38527358976542	5.7903546238735	6.26670386897078	6.28846467396907	5.65888800099371	0.662779824167023	0.0685151963822265	0.342382587266369
Merged-chr9-94513002-4	chr9	94512487	94513487	+	960.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	25094.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.07517147593613	5.30139981653283	5.08026652469116	4.96352177678951	5.01425558435152	5.14465063514003	-0.260344482800207	0.478429481633729	0.823830973630631
Merged-chr8-125054697-4	chr8	125054159	125055159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	CpG	464.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	7.41278371313167	7.30838117600288	7.34191245092303	7.07757634536803	7.38300996613512	7.08684049782314	-0.231922098514411	0.341276383240336	0.730768298120433
Merged-chr13-56703001-4	chr13	56702548	56703548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	-4.0	NM_001164041	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	7.63458170199587	7.41333381951744	7.40366197355331	7.79122495867451	7.0094683193867	7.43963924005135	-0.0550836667478719	0.848761984316413	0.964368239368528
Merged-chr5-103819853-4	chr5	103819356	103820356	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65283.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.76032477799012	3.53094593566285	3.8458668429074	3.87338340926486	3.91134392366979	4.05614037976209	0.745234114819915	0.161332942958345	0.534168510920529
Merged-chr19-17165164-3	chr19	17164640	17165640	+	708.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174365.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.1083465683871	5.08327592685373	5.01516368267549	4.95986347681654	4.91361459872197	5.17961886068217	-0.127919803895437	0.729821484210717	0.930635866770147
Merged-chr6-108832427-4	chr6	108831920	108832920	+	984.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	3779.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	3.69281436454801	3.81439094917834	3.8505778441492	3.76081322780074	3.52571672334012	3.96628936969442	-0.106538666666098	0.846751272777737	0.964111312125802
Merged-chr10-75710407-4	chr10	75709911	75710911	+	930.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	53946.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	2.94894722864733	3.07275471591799	3.11451360288224	2.87083478225034	2.93027962537568	3.18554405405792	-0.223313846114408	0.743400750641762	0.935615824630138
Merged-chr9-57927923-2	chr9	57927423	57928423	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027086, intron 10 of 10)	Lx8|LINE|L1	-12212.0	NM_011352	20361.0	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	3.5181791354231	3.43120785670825	3.59705731209099	3.9830412502037	3.61537896421929	3.6685925340981	0.872031901221942	0.124640415443268	0.472306664538883
Merged-chr17-24285898-3	chr17	24285390	24286390	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031621, intron 21 of 29)	intron (NM_001031621, intron 21 of 29)	-34481.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	3.76241307747559	3.96935889158729	3.7089415030652	3.23824768154516	3.20869043827802	3.56847436173262	-1.81886242986442	0.00314012474241595	0.0436126689312212
Merged-chr1-36243782-2	chr1	36243282	36244282	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 1 of 40)	intron (NM_198899, intron 1 of 40)	520.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	7.12628494848352	7.17879571246761	7.0494157941263	7.05031748978548	6.93387429157051	6.65361224371456	-0.340649915828275	0.181261104963838	0.563574247882485
Merged-chr7-44373922-4	chr7	44373414	44374414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027049, intron 2 of 5)	intron (NM_027049, intron 2 of 5)	1116.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	5.84687738432453	5.77240478631654	5.71676678572094	5.90387745408763	5.78373783744712	5.72536531449216	0.045658577560483	0.881053803069561	0.97262624933271
Merged-chr10-80317214-4	chr10	80316731	80317731	+	926.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011789, exon 14 of 14)	3' UTR (NM_011789, exon 14 of 14)	3317.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	2.39578269400532	2.44488858840752	2.52020206922211	2.72728773546269	2.50035266769138	3.06892127998443	1.86834112866887	0.0253974284474467	0.188870249911086
Merged-chr7-34957022-3	chr7	34956523	34957523	+	987.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	44616.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	4.23024434340735	4.40071506941504	4.06378513950396	3.8799495420147	3.47978370690789	3.93497123664079	-1.45042017849187	0.00818276733436216	0.0874369724358041
Merged-chr2-27723728-2	chr2	27723228	27724228	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	13145.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.34447028051229	5.52557027275927	5.51701356636438	5.49095474598517	5.58580673854116	5.55132946831468	0.156523757892442	0.632130726702524	0.895435008062156
Merged-chr5-74673038-2	chr5	74672537	74673537	+	746.75	f0_balb.idr|f1_balb.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	4835.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	2.4336671539526	2.65247468112021	2.66596702183327	2.20924938696232	2.07587685967106	2.42934660813459	-2.60490592501308	0.0105099325824476	1
Merged-chr14-76964210-4	chr14	76963693	76964693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72424.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	4.97855335640764	4.9535365892419	4.18530610889744	3.87526555667453	3.7638411935764	4.15502568114765	-2.26383966020143	2.51023466647662e-05	0.000886928263813957
Merged-chr12-110458883-4	chr12	110458300	110459300	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	L1MA5A|LINE|L1	11621.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	6.3892553767298	6.73867668569903	6.43872829165708	6.42694577741898	6.50821026388159	6.62030509599117	-0.0329982499975265	0.905346175668284	0.978279198518346
Merged-chr2-170218600-4	chr2	170218070	170219070	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75895.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.90834764422334	5.63947936160908	5.54074664848212	5.98308066865656	6.12033957789198	5.85410141905988	0.503170266865081	0.114776748789054	0.452301383530173
Merged-chr2-28497841-2	chr2	28497341	28498341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 2 of 6)	intron (NM_139197, intron 2 of 6)	950.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	6.20678004321455	6.37227806189908	6.61369870115912	6.50165386601035	6.3656218757947	6.64078376956867	0.16447041227294	0.56380093497486	0.865992481769395
Merged-chr13-113600855-4	chr13	113600361	113601361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17703.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.79569569475779	7.55546216106107	7.20958330627491	7.30906558099666	7.81094683332259	7.21644100002818	-0.096078649152887	0.743180495183957	0.935528839299546
Merged-chr16-10945949-4	chr16	10945451	10946451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31154.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	3.44458080855679	3.35751891163375	3.28235820321426	3.43870663366305	3.30844239972264	3.41151219178694	0.0687689970468768	0.908372837884422	0.979259582109985
Merged-chr11-101447691-2	chr11	101447191	101448191	+	901.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-721.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	3.7105340954482	4.1947987233008	4.13512590142833	3.70383977807055	3.92982190169799	4.15847889656983	-0.270223991592924	0.623082681600707	0.891251075175817
Merged-chr10-121500224-3	chr10	121499709	121500709	+	848.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23959.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.14538709063803	3.27721532206999	3.31024532421792	3.20477792691264	3.30270018260896	3.78140869971414	0.779665632324491	0.229312285249264	0.624795069616582
Merged-chr12-85524614-4	chr12	85524123	85525123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50733.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.93639503770461	7.86448759062799	7.49037018819593	7.52778269449134	7.42750557572394	7.07549704372286	-0.609816228696791	0.0203215401075533	0.163215705527925
Merged-chr5-24427282-2	chr5	24426782	24427782	+	831.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-239.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	3.04870110887582	3.11299154749537	3.12943866839364	3.27699769513248	2.88760649544366	3.20170680674435	0.13938404239792	0.836123950820688	0.961948623063023
Merged-chr9-106888856-4	chr9	106888371	106889371	+	818.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1871.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	3.85431049043462	3.62366515014837	3.76133302078769	4.10524257814913	3.9248764293418	4.33909018403561	1.14809766627192	0.0302673832637239	0.210136706433704
Merged-chr16-85305206-3	chr16	85304693	85305693	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-131486.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.13031407385021	3.49638836283066	3.41090798357511	3.34593733064515	3.57952909521726	3.83365301737107	0.881832304328975	0.164026726132739	0.538098715819781
Merged-chr4-139232246-3	chr4	139231743	139232743	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38132.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.17489148813907	7.29703375618503	6.65571640299237	6.9948596598984	7.03415021003341	6.42661758780032	-0.339566641155287	0.283473895636624	0.681376161050487
Merged-chr2-155074397-5	chr2	155073876	155074876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016661, exon 1 of 10)	exon (NM_016661, exon 1 of 10)	121.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	6.11572713835642	6.14517558352352	5.84530634012111	5.9072552383556	6.22161182719722	5.8016838439956	-0.0815080382290965	0.79685377040454	0.951558675772401
Merged-chr1-171018886-4	chr1	171018384	171019384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144559)	promoter-TSS (NM_144559)	-42.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	7.42462702976857	7.35009844844466	7.18625949153199	7.49545535724449	7.77039722203507	7.4826038850758	0.391289753537852	0.103401272332974	0.428596564032599
Merged-chr2-59145786-2	chr2	59145286	59146286	+	709.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1_Mus2|LINE|L1	14897.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	2.88108322492274	2.80520837680185	2.98431078923395	3.27619829338035	2.83782258430343	2.80539737897974	0.485493779980273	0.506181738821716	0.838347465097765
Merged-chr11-23256935-2	chr11	23256435	23257435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	894.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	7.83575338461992	7.58867386361699	7.76543308277106	8.1025154094958	8.1207974309387	7.89646464428296	0.450150340885576	0.0444348619914089	0.265608045145817
Merged-chr7-73584230-4	chr7	73583717	73584717	+	886.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25822.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.13564284128262	5.05933040681463	5.21515130822648	5.31263625165814	5.21958438707524	5.37100880109907	0.33450619683865	0.339253656355958	0.729122178214163
Merged-chr14-55015303-4	chr14	55014804	55015804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-150.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	7.62176551906255	7.90453834941636	7.49271593138948	7.79936945985511	7.95662616353499	7.68717491490264	0.190280931397614	0.43224839681033	0.797270167804312
Merged-chr11-6520938-4	chr11	6520409	6521409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178440)	promoter-TSS (NM_178440)	49.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	5.90006451186441	5.85909167342147	6.2218639752575	6.13449678045694	6.18705823793869	6.3008690005461	0.36669478299527	0.21771292309725	0.611656200779633
Merged-chr15-79328287-4	chr15	79327805	79328805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	66.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	8.92458498765698	8.9253075186314	8.19827498636632	8.83914442501631	8.92169821532777	8.23942989731533	-0.0348871749190185	0.907080738369724	0.978868492078838
Merged-chr1-55792965-3	chr1	55792448	55793448	+	703.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138293.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.75645901627228	2.78449801959311	2.96040365571378	2.91602044465041	3.02775060148037	2.97366297546887	0.703759264791559	0.312476373524558	0.707170399766948
Merged-chr1-85090754-1	chr1	85090254	85091254	+	957.1666869999999	f1_balb.idr	intron (NM_213615, intron 5 of 6)	Lx2B2|LINE|L1	19099.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.72190313527678	3.76353606734483	3.75621964361973	2.95953287716334	2.86243209567338	3.5774355623246	-2.0326035323273	0.190890528554609	0.577428967011753
Merged-chr6-57825050-4	chr6	57824535	57825535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146168)	promoter-TSS (NM_146168)	90.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	7.87853279782615	8.09323639820486	7.74817550781811	7.66437457599948	7.67206646719485	7.77003440937522	-0.315307380876629	0.165112319763471	0.539850913705014
Merged-chr14-75180243-2	chr14	75179743	75180743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43818.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.56992666545263	7.90463366462072	7.5392201860051	7.6545302446045	8.02895828200139	7.50321913801052	0.101844424057655	0.699995938943052	0.920786361571606
Merged-chr17-14990258-3	chr17	14989758	14990758	+	982.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123370, intron 11 of 11)	intron (NM_001123370, intron 11 of 11)	11394.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	3.79816510619668	3.95159646533816	3.88582571224834	4.06685307482189	3.97894850282884	3.62731850379084	0.0993107633255426	0.853119352980422	0.965597129346461
Merged-chr19-53143336-4	chr19	53142842	53143842	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013758)	promoter-TSS (NM_013758)	586.0	NM_001164100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	4.9851714961305	5.2816675143878	5.23000802485315	4.95291780033536	4.84839987638067	5.16738143281569	-0.392016427150069	0.301572955088979	0.698296436539412
Merged-chr7-43407805-3	chr7	43407316	43408316	+	764.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-464.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	2.37969462952199	2.27611009680007	2.50223154529664	2.44029934390511	2.42105077953896	2.57579681310609	0.580341139725243	0.475839089446521	1
Merged-chr10-30660753-4	chr10	30660249	30661249	+	959.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-4882.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.75279441257534	3.5366392314937	3.67554826675925	3.72598481909264	3.57573586873406	3.74550265949112	0.0766647989092847	0.889046632099664	0.974207858658472
Merged-chr7-19028277-3	chr7	19027789	19028789	+	997.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	3912.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	4.23884117204553	3.95689906233196	4.14514685456174	3.94692345672471	3.82385530212999	3.82007238610248	-0.761290079938782	0.13292632226101	0.487842524136338
Merged-chr10-128082523-2	chr10	128082023	128083023	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-784.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	5.90945297201111	6.03635289300689	5.85174286739043	5.84203815282001	6.07657499344295	6.07626578399941	0.11032105607263	0.712828587984164	0.92531822516521
Merged-chr7-30592596-4	chr7	30592111	30593111	+	927.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021397, intron 1 of 5)	intron (NM_021397, intron 1 of 5)	331.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	3.40979124785936	3.42116815491417	3.44003624916963	3.22902732290084	3.385718899426	3.28619264465617	-0.457343252981202	0.447343602194193	0.806398891903516
Merged-chr11-120483834-2	chr11	120483334	120484334	+	686.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-803.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	4.24940988035588	4.16886830589776	4.63469174256996	4.41267233272393	4.29989104325108	4.73523553046459	0.332907061611438	0.484235361521801	0.826755140042123
Merged-chr19-36922250-3	chr19	36921742	36922742	+	865.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	2.68163077314542	2.47011687875724	2.54821513029122	2.89206039553886	2.84351565529534	2.87927182069777	1.6618095167913	0.0329023204437637	0.221016895090392
Merged-chr17-65779630-2	chr17	65779183	65780183	+	798.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3672.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	3.16576947742701	3.02576033645173	3.09724384241474	3.26532181518	3.02134300096461	3.28435082739212	0.400236405791586	0.539679930067524	0.856057704035328
Merged-chr18-11695619-1	chr18	11695119	11696119	+	683.0	f0_balb.idr	intron (NM_001081223, intron 5 of 18)	Lx7|LINE|L1	38270.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.37561588084445	4.41770619504821	4.32252689216522	4.6069716189032	4.68380988765269	5.18873834801329	1.11640641851866	0.0132533465017009	0.122314158796975
Merged-chr11-107319960-2	chr11	107319460	107320460	+	915.400024	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B3A|SINE|B2	-130579.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	6.1467725179762	6.07157392408375	6.27498381545132	6.241644994998	6.42148011614498	6.44651064061985	0.35304557673467	0.2060449146485	0.596644693164169
Merged-chr13-34994203-4	chr13	34993704	34994704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-60.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	7.33856108226668	7.59255251651899	7.49207006814264	7.42963315416265	7.44480968744011	7.69721268012821	0.0661100691841156	0.780744080430401	0.946078518476608
Merged-chr13-95847192-1	chr13	95846692	95847692	+	668.0	f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	44730.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.88396093170419	4.05162926535944	4.21461198119688	4.48560264814561	4.98848971677706	5.01619416965371	2.06737643468077	1.64201413564235e-05	0.000615722001795983
Merged-chr17-45566389-3	chr17	45565965	45566965	+	869.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357105, exon 4 of 4)	exon (NM_001357105, exon 4 of 4)	2529.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	3.13637171988126	3.31888331807168	3.68158441392724	3.47660858774343	3.58586624727774	3.65221323352395	0.670184844385286	0.283460058450884	0.681376161050487
Merged-chr18-89197295-3	chr18	89196747	89197747	+	826.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178687)	promoter-TSS (NM_178687)	-180.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	3.09822214826692	2.91415100489006	2.69161648309649	2.85663310854924	2.72475848515204	3.01354623287327	-0.250197001626735	0.738918607158235	0.934106252288505
Merged-chr11-79089837-3	chr11	79089314	79090314	+	688.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	IMPB_01|Satellite|Satellite	-29978.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	5.03946383049197	5.08532531769459	4.67043524251385	5.02818001522433	5.00028159782882	5.15273298274245	0.211950863155205	0.587201627819006	0.875769926947203
Merged-chr12-76537620-4	chr12	76537116	76538116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4056.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	7.14891560567262	7.22781543415782	7.22952485098846	7.34933601431539	7.63321392648558	7.39952216711634	0.401864299483134	0.089458760409278	0.39739920645642
Merged-chr6-113326160-2	chr6	113325660	113326660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-816.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	5.75305646088936	5.94050153392052	6.08687926769467	5.79474883122633	5.90373715739783	6.12631707285828	0.0266815758285086	0.931751625648283	0.984929477721491
Merged-chr11-74993250-4	chr11	74992750	74993750	+	860.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	67378.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.11381154031994	5.79024895350926	6.00235538563647	6.00746073379565	6.60206146280983	6.29738211651576	0.607101989822316	0.0598591925125861	0.316701449137615
Merged-chr13-23621209-4	chr13	23620694	23621694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-70.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	8.15701031282966	8.60893628710589	8.13809918596494	8.21659644122754	8.81003437321425	8.39188803781433	0.247675558741907	0.3579685634583	0.744515915420756
Merged-chr16-94501720-3	chr16	94501224	94502224	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 6 of 7)	intron (NM_007834, intron 6 of 7)	24905.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	5.05818751368929	5.02237386818372	4.58306908791652	4.61735414977146	4.61989592855912	4.37045829276881	-0.849517329434315	0.050785119146604	0.287015431226694
Merged-chr5-134677350-2	chr5	134676850	134677850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	898.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	4.84061319778977	4.98441696201888	5.12992060345993	4.72186045106987	4.45533739177284	4.66167817977952	-0.856823822137625	0.0351457345391047	0.230068938677509
Merged-chr16-91355876-2	chr16	91355376	91356376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-16907.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.88400034691647	7.75658487420312	7.54302466250689	7.80715425288012	8.09726574155599	7.72456567987784	0.218255819957637	0.368343349001203	0.753359239527292
Merged-chr11-77980426-4	chr11	77979931	77980931	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	4.186124485159	4.49478946526233	4.40462621209673	4.11894049784812	4.28679395652853	4.34321051844389	-0.310248930791368	0.502993126161158	0.836691193058519
Merged-chr16-22120273-2	chr16	22119773	22120773	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43026.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	7.65237757330176	7.87619502325822	7.38090823040484	7.75695870352391	8.32107767850827	7.638975722596	0.41911186444827	0.146076185957114	0.509759573943952
Merged-chr2-5951893-4	chr2	5951356	5952356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 1 of 21)	CpG	387.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.36573227274795	6.67935262143888	6.29783562616338	6.4982548083255	6.16662349294669	6.47218672017669	-0.140360691697078	0.633737864088109	0.896084021759701
Merged-chr18-25883562-4	chr18	25883052	25884052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129395.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.59918785358699	4.84431116142897	4.9395410833461	4.71163166007371	4.5319009124398	4.50258099822828	-0.493786358313872	0.238190488717399	0.634837659879174
Merged-chr2-102945284-3	chr2	102944786	102945786	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43621.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.26772907842404	7.17714663542019	7.21761281582311	6.8424201387111	6.81632715139611	7.47377232278872	-0.224638341923749	0.433902844723694	0.798058972231854
Merged-chr15-101251273-2	chr15	101250773	101251773	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-15573.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.29683844811274	3.36051582591772	3.6212601047864	3.38097498765551	3.20823806141989	3.87568406539826	0.303475414385498	0.639946548994294	0.898255496259518
Merged-chr17-5758674-2	chr17	5758174	5759174	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39983.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	2.75214121164271	2.90855189225537	2.55342850103858	2.96185757501538	2.71823143694401	2.95220019641754	0.647314276778535	0.406123748176769	0.780563846612881
Merged-chr18-46571584-2	chr18	46571068	46572068	+	913.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	2965.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	2.27857279641383	2.43862209036162	2.43502912929439	2.59635519249481	2.48092437574989	2.81761275884623	1.50960047407484	0.0702082263822059	1
Merged-chr16-87663258-2	chr16	87662758	87663758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35696.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.41725536955635	5.43302762607579	5.40302319577112	5.38117189417837	5.26915316838347	5.46593261321353	-0.101896156682111	0.760657028326357	0.940974235656743
Merged-chr1-30950016-7	chr1	30949526	30950526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002688)	promoter-TSS (NR_002688)	-271.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	9.22694655454007	9.45239943598932	8.61749960256575	8.6982324542221	9.1385592416742	8.56939342790538	-0.436387055944541	0.131935062997014	0.485754545214846
Merged-chr7-110121846-4	chr7	110121341	110122341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-218.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	6.96254798362982	6.97062829316469	6.58871945585544	7.00593397678723	7.20166288422255	6.63025308474883	0.180976442642363	0.531738110130384	0.851792887243639
Merged-chr10-69254591-4	chr10	69254089	69255089	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	MIRb|SINE|MIR	41395.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.646364747771	5.55959651953018	5.46938324269708	5.63402330801241	5.4643523953863	5.69917235435519	0.0543964054705017	0.867164305811583	0.969304239091486
Merged-chr14-70113651-2	chr14	70113151	70114151	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	PB1D11|SINE|Alu	13558.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	2.25194240451372	2.51302353947067	2.21336663744557	2.51394992597748	2.431932801133	2.55698137982327	1.0125717318462	0.24957841001431	1
Merged-chr7-24530534-4	chr7	24530047	24531047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153134)	promoter-TSS (NM_153134)	-101.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	7.39331991765661	7.50105854697177	7.19032071155797	7.54094304412166	7.54071251940231	7.18451733738595	0.0973483399515369	0.697302027513592	0.919874864928276
Merged-chr15-76079866-2	chr15	76079366	76080366	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356629, intron 1 of 12)	intron (NM_001356629, intron 1 of 12)	1004.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	5.04552219559508	5.09454720129124	5.40264009628281	5.2392773211815	5.29784545084633	5.31826138776475	0.217389564214481	0.544280220503105	0.85765692399006
Merged-chr1-74384045-2	chr1	74383545	74384545	+	694.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 12 of 15)	exon (NM_013612, exon 12 of 15)	-7564.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	3.23477529824425	3.05427904187199	3.61414648031704	3.40352179193239	3.14411426527583	3.48369602085057	0.125559175295551	0.850238858852694	0.964836457860265
Merged-chr3-89228315-4	chr3	89227812	89228812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013605)	promoter-TSS (NM_013605)	-744.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	4.37147393311117	4.22629368874319	4.28929503194262	4.49398702870197	4.26675956193167	4.31200222304013	0.166033061115289	0.712651408072921	0.925242852120911
Merged-chr16-25059192-4	chr16	25058667	25059667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-472.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	8.16585680732687	8.36435423283261	8.19986229909921	7.92862336864037	8.11904697126536	7.77217682572561	-0.41319959301633	0.067289130522235	0.339148648227904
Merged-chr2-153156263-4	chr2	153155746	153156746	+	795.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5055.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.68776340871631	3.39780126000901	3.42261858936513	4.04489246291363	3.84114820364643	3.93243975361929	1.42592045383845	0.0124732910430756	0.117460117826193
Merged-chr2-27695314-2	chr2	27694814	27695814	+	738.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-13978.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.35387240092012	5.75000737235409	5.995674440405	5.89011509891498	5.44127334516918	5.73076485334617	-0.0401014198073284	0.912429152348606	0.980363124210176
Merged-chr16-33985547-4	chr16	33985044	33986044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 56 of 59)	intron (NM_177357, intron 56 of 59)	-18506.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.2980996432555	2.7217418450645	3.17998977736068	3.11417323679654	3.15565765978511	3.13656163611422	0.1853837916122	0.80102647320791	0.95274755793001
Merged-chr11-102248155-2	chr11	102247655	102248655	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-727.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	2.72008673728771	2.40253391321438	2.46493553647287	2.5297604086392	2.45371223835422	2.66525109796012	0.0550478102874832	0.945900582714549	1
Merged-chr5-34546510-2	chr5	34546010	34547010	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	-3066.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	3.29389013584114	3.50365736958962	3.70079077711912	3.4145551010613	3.464383579212	3.28791500381019	-0.403387017991658	0.509339622649953	0.84026772146894
Merged-chr12-85541386-4	chr12	85540891	85541891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.62789776402094	5.32452282259994	5.3600940330412	5.25272547709908	4.93472747807259	5.05704307413686	-0.733986408972925	0.0446415656308269	0.26633910225312
Merged-chr7-107610989-3	chr7	107610478	107611478	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	RMER19B|LTR|ERVK	4134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.01532262181365	3.96058353039958	3.80829286229057	4.01769763279008	4.08114125110162	4.08092377452416	0.365620125326315	0.46066033372294	0.81462659231969
Merged-chr17-47688998-4	chr17	47688547	47689547	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025365)	promoter-TSS (NM_025365)	-661.0	NM_001164729	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	4.91576808335754	5.01558168570983	4.71534447686129	4.71820981634461	4.85950534504381	4.52192865422821	-0.399686314557892	0.332290729710247	0.723518174479399
Merged-chr11-115158649-2	chr11	115158149	115159149	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021411, intron 4 of 8)	intron (NM_021411, intron 4 of 8)	4471.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	3.33497412397163	3.53963514257993	3.57020140485555	3.81126530635984	3.5500646707788	3.79469621978185	0.829322810061326	0.148666778737099	0.514484500297642
Merged-chr18-20815559-4	chr18	20815047	20816047	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69143.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.73995454808378	3.64656161830779	3.57957514000464	3.70239272384205	3.58681248981352	3.85654246080284	0.174806069995757	0.750220288204059	0.937550343416037
Merged-chr11-53349479-2	chr11	53348979	53349979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1288.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	2.69812473770904	2.722097373404	2.73711037142994	2.72929013049958	2.93271168147158	2.87163951499547	0.677701163690787	0.348202505864277	0.736088365340327
Merged-chr10-116728438-2	chr10	116727938	116728938	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131036)	promoter-TSS (NR_131036)	739.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	4.18429471126634	4.28463000114401	4.21365637181435	4.53341111079514	4.52240606948498	4.84443865558257	1.02819667475073	0.021581399126638	0.169918538610619
Merged-chr10-75221545-5	chr10	75220995	75221995	+	806.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	B1F1|SINE|Alu	9105.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	6.56965018155538	6.49820420582475	6.59120959996414	6.75392550796231	6.93256893157063	6.9765396629412	0.534841649486439	0.035590547313792	0.231686610928337
Merged-chr12-17776316-1	chr12	17775816	17776816	+	959.0	f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	(TG)n|Simple_repeat|Simple_repeat	85507.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.8783896934252	3.92747687344874	4.17575391248525	4.58409082217432	4.65310663655222	4.58940146943335	1.69535661086664	0.000260688903024213	0.00621886532191476
Merged-chr5-100508779-1	chr5	100508279	100509279	+	544.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8140.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	4.08389482614341	3.96173949410516	3.99021082258661	4.29817330892622	4.02882394271509	4.2478650991223	0.506925005960494	0.296252139073293	0.693022144754045
Merged-chr2-4602536-2	chr2	4602059	4603059	+	548.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 9 of 11)	intron (NM_001177844, intron 9 of 11)	42805.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.5257558700893	2.30687218539427	2.64551855492001	2.5171366994646	2.37542758718346	2.77789373903868	0.381533103019348	0.64741055347845	1
Merged-chr15-73645311-4	chr15	73644775	73645775	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20531.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	7.14716382663576	7.30624701956638	6.79059659578743	7.11834309363092	7.2248820989243	7.05537437268221	0.0422989018993373	0.87249314313086	0.970261003150518
Merged-chr13-5805264-2	chr13	5804764	5805764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	52828.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.5471384425157	6.40990395668402	6.19368702106519	6.11086549156249	6.10907620812219	6.51895889747731	-0.247300282598369	0.41048519650965	0.783404487056467
Merged-chr5-123891864-4	chr5	123891382	123892382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11862.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	5.69342590487873	5.06437510680226	4.76234902595891	5.39514385399451	5.47149617492657	5.00169731303635	0.128995757390406	0.77456770292807	0.944477929413368
Merged-chr17-35121387-4	chr17	35120880	35121880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	49.0	NM_001303445	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	7.49724601453609	7.95112879741593	7.83545726842419	7.50194950905051	7.83486699054003	7.26117314107309	-0.304526567248447	0.26562031454424	0.663375523311218
Merged-chr11-23810988-3	chr11	23810493	23811493	+	818.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	4.09289912101047	4.07821703144869	4.36017391548499	4.19423848400057	3.71493760159291	4.25993726206739	-0.304721292457209	0.562687537976044	0.865755360453189
Merged-chr2-160602098-2	chr2	160601598	160602598	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43799.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.47616278694101	3.30458338847268	3.21785459112288	3.48082041299514	3.00807607109505	3.76798289994891	0.433293412111777	0.531206117802592	0.851485236950839
Merged-chr2-25195325-2	chr2	25194825	25195825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146115, exon 2 of 2)	exon (NM_146115, exon 2 of 2)	1488.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	6.03181210487264	6.09266935235789	6.70225197078326	6.1759303323005	6.26317481807848	6.54783392497389	0.053447239585767	0.872098680555821	0.970261003150518
Merged-chr11-88235583-4	chr11	88235089	88236089	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	31201.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	4.17037824152586	4.45449698759166	4.19654498201044	4.70983004216531	4.7155295842353	4.16501889358444	0.705853810961688	0.145025997784514	0.507985592300096
Merged-chr11-11668497-4	chr11	11667997	11668997	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17428.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	5.59854930746427	5.54208115674502	5.78394877202195	5.77237916589359	5.90326753990399	6.02934750817433	0.479447753533488	0.125494478297065	0.474078843870859
Merged-chr15-55090302-6	chr15	55089837	55090837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355594, exon 1 of 10)	exon (NM_001355594, exon 1 of 10)	154.0	NM_183089	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	4.74642614018099	4.84937838992037	4.69265878301106	4.59750580648326	4.47075228360133	4.41966753140414	-0.6494649512865	0.11686509176949	0.45650957964207
Merged-chr19-4133256-2	chr19	4132756	4133756	+	548.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025889)	TTS (NM_025889)	6353.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	2.50520444885379	2.39951156519658	2.58680223852268	2.74081706583103	2.9653022562257	2.90985020417612	2.26639746902426	0.00552598897783559	0.0657523939464813
Merged-chr4-9635361-2	chr4	9634856	9635856	+	835.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	Lx2B2|LINE|L1	8361.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.43215961480348	4.04185838122733	4.24091455731061	4.56287245584507	4.73435507404188	4.35771219913836	0.820120104823934	0.0798465509408718	0.373650065276872
Merged-chr11-69656471-2	chr11	69655971	69656971	+	635.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001301710)	TTS (NM_001301710)	1434.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	2.3805849298378	2.30999883018395	2.79580532546744	2.58192826386354	2.23944891027985	2.30697399067897	-0.751513645392526	0.39999805755123	1
Merged-chr3-61344262-4	chr3	61343754	61344754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.18469160318276	4.75209316916718	5.03805497344186	5.17250580827797	4.58203796946489	5.40649968671265	0.182913663689073	0.683040572128168	0.91523316791368
Merged-chr5-101955245-1	chr5	101954745	101955745	+	568.0	f1_balb.idr	intron (NM_172882, intron 7 of 66)	intron (NM_172882, intron 7 of 66)	114676.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.18033008634301	3.07051663164828	3.23686463132172	3.30328798510854	3.3614270048196	3.30856769056953	0.687675488093639	0.267817709656239	0.664975925109882
Merged-chr3-105811299-3	chr3	105810785	105811785	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4282.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	3.19861196082246	3.05985869470312	3.30254363263819	3.05045620615309	3.43049262915659	3.08362222637081	0.0901661459693521	0.893286825187417	0.975210713351106
Merged-chr10-25464454-4	chr10	25463970	25464970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 4 of 16)	intron (NM_001358754, intron 4 of 16)	56102.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.04450787812615	4.93896191990993	4.71164080038651	5.1347025130456	5.04026538720742	4.64866444679443	0.117530823714501	0.774472938805551	0.944477929413368
Merged-chr8-88697549-3	chr8	88697040	88698040	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	512.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	8.2139139819627	8.53430001472664	8.05859706420723	8.3305593732581	8.68372447788274	8.34849143274926	0.249354169820943	0.310324654448938	0.705829393476587
Merged-chr14-30548306-8	chr14	30547837	30548837	+	917.5520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009388)	promoter-TSS (NM_009388)	-794.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	6.52776355506832	6.59765967858286	6.57761361102599	6.78583331191945	7.16082134628883	6.73689619060847	0.551892519973284	0.0418797989184285	0.256098648372499
Merged-chr7-63913735-3	chr7	63913251	63914251	+	770.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-3106.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.69016860641404	6.69480867489624	7.00971884544697	6.81784866460969	7.19610674471199	7.14215181927489	0.408681435942739	0.129141908110019	0.480618862493977
Merged-chr12-24974987-4	chr12	24974492	24975492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	60.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	5.66471861182715	5.91585975449826	6.44650515321691	6.38461359527531	6.22681586360833	6.10443860322332	0.350731995389698	0.305805916299589	0.701883343337569
Merged-chr8-91060719-3	chr8	91060174	91061174	+	698.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-9383.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	3.40845711612104	3.52182144925573	3.44509510239747	3.44829803724577	3.17583757594683	3.62072276971928	-0.155175099088981	0.800232325407596	0.952428832140568
Merged-chr1-151817075-4	chr1	151816562	151817562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	61688.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	6.41183822136034	6.13855904397512	6.12650020548835	6.35681901984946	6.47373239198877	6.35337239192463	0.266620982668328	0.344669107096269	0.733268181259122
Merged-chr7-29984237-2	chr7	29983737	29984737	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001033355, intron 1 of 9)	intron (NM_001033355, intron 1 of 9)	282.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	7.1454556727948	7.27836778721443	7.19570761178072	6.63960639044762	6.30200580436039	6.72976281511144	-1.00741736101624	0.000140533045025429	0.0037628173244121
Merged-chr12-4190845-3	chr12	4190406	4191406	+	901.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	B1_Mur4|SINE|Alu	43059.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.40939255143652	5.70077222050196	5.71451397244444	5.00392000162864	5.20611508641904	5.57261758626807	-0.660915902520417	0.0730620931244734	0.355185244490604
Merged-chr2-160011527-4	chr2	160011019	160012019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5134.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.02942357277983	5.90096516358385	6.13225496632211	5.63647824292623	5.64029894360645	5.56153614047869	-0.720503249834222	0.0191178014203928	0.156812156021778
Merged-chr2-157423556-2	chr2	157423056	157424056	+	710.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-737.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.79289773968252	4.45874711712149	4.66436360908433	4.21649162487489	4.15111024080864	4.16791884738555	-1.21501788252415	0.00740781878890162	0.0814675077014231
Merged-chr12-117379268-3	chr12	117378692	117379692	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42180.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	3.91470181862223	3.81328784117369	3.82804994737159	3.4505187735499	3.27350151840757	3.74876730780468	-1.26593223322482	0.0314775583213465	0.21495190998083
Merged-chr10-8841670-2	chr10	8841170	8842170	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RMER10B|LTR|ERVL	44400.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.33530150797999	3.95606819397853	4.62963769962585	4.24750750476334	4.1981695430669	4.4264835884403	-0.0980137505716553	0.844895508220937	0.963760118842549
Merged-chr8-22860839-2	chr8	22860339	22861339	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 1 of 17)	intron (NM_001081149, intron 1 of 17)	1300.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	5.02476988617648	5.13252770065452	4.93280271737961	5.07851215395102	5.19884970629641	5.17421733826962	0.237400917729763	0.513643133499891	0.842702640331072
Merged-chr2-167758086-1	chr2	167757586	167758586	+	540.0	f1_balb.idr	Intergenic	Intergenic	66909.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.0680877985252	3.61237792841675	4.01934347282649	3.75616031975802	3.68243859279279	4.08702785592996	-0.209411075886292	0.708424048539058	0.923708659245088
Merged-chr8-84064842-2	chr8	84064360	84065360	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1976.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	3.75475009185289	3.68604141441279	4.27072839241566	3.66940651491116	3.60433963497775	4.21778944405764	-0.213468763510697	0.722288387639577	0.92872455507539
Merged-chr14-26610824-2	chr14	26610324	26611324	+	686.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 11 of 19)	ID_B1|SINE|B4	-27310.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	3.79456072299949	3.7791061403594	3.45555618532564	3.6031887704954	3.36758786064234	3.58507621474347	-0.616154029839357	0.291960815018917	0.689235268138963
Merged-chr5-95935851-2	chr5	95935351	95936351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-21088.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.76038829165321	4.81918411652793	4.90894412345014	4.63615281599263	4.40986560770251	4.93887509363386	-0.378237138094448	0.372661409939997	0.756509678731026
Merged-chr18-37643211-2	chr18	37642711	37643711	+	866.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175770, exon 2 of 2)	exon (NM_175770, exon 2 of 2)	993.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	5.12808851172646	5.30418107700503	5.01755578207049	5.16530800462439	5.22810394456264	5.18725946271988	0.0637827083828707	0.859125059007969	0.96720440955128
Merged-chr14-51090432-7	chr14	51089858	51090858	+	839.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-719.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	6.77101441775685	6.76452805856021	6.46760160533997	6.79286119362167	7.10709730818465	6.75454277884945	0.34186768422243	0.211885353461767	0.604324278153379
Merged-chr16-4626711-4	chr16	4626214	4627214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030205)	TTS (NM_030205)	-1768.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	7.06884809932638	7.07696296841577	7.07257587371004	7.08811938112895	7.47961059382887	7.00937951672084	0.223592247828374	0.390242747134381	0.769547406615622
Merged-chr15-89210696-4	chr15	89210204	89211204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-855.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	6.88053517315231	7.2486487540593	7.11692932579135	7.26122389937655	7.82060350756988	7.42874719457382	0.654409843239658	0.0175238317389438	0.14786765960187
Merged-chr19-25139181-1	chr19	25138681	25139681	+	859.0	f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97794.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	5.04457245020385	5.1195109331053	4.93511539647392	5.74840250971452	5.88512360827318	5.57462927478742	1.37834307359657	7.11305938289967e-05	0.00211909575772401
Merged-chr5-65987003-4	chr5	65986498	65987498	+	897.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027961)	TTS (NR_027961)	17287.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.71796101294195	4.85806170173061	4.88596991086637	4.59134557827972	4.85845113978221	4.68496625245655	-0.218898959771639	0.587627061931103	0.876017619062143
Merged-chr6-115762234-4	chr6	115761826	115762826	+	825.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168257, exon 1 of 11)	5' UTR (NM_001168257, exon 1 of 11)	140.0	NM_001168257	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	5.00942903571074	4.56417899261943	5.10875873209747	5.04600261685598	5.14938514103731	5.29598137107312	0.548126341948163	0.173965928069824	0.553189356180945
Merged-chr6-32511123-4	chr6	32510614	32511614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040277)	promoter-TSS (NR_040277)	-27.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	7.07919771471108	7.18729791981927	6.82723695612227	7.01538304257496	7.19922837867182	6.91600427329294	0.0119428130627964	0.963123758327695	0.991042187277023
Merged-chr15-67118089-2	chr15	67117589	67118589	+	746.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	58793.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	5.99139074511514	5.76601615945654	5.93028447663528	5.45965954585879	5.21161261733564	5.50482962976105	-0.951543107373823	0.0037428110954918	0.0495122139322229
Merged-chr14-27382107-2	chr14	27381607	27382607	+	912.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	MER21B|LTR|ERVL	20718.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.62924986266321	6.36129905873381	6.05524223100694	5.99843375978508	6.33520410737804	5.52507857563231	-0.609624866398904	0.0957854397862984	0.412649682093602
Merged-chr7-67461493-3	chr7	67461003	67462003	+	861.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88645.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.7499602300558	7.02487378222167	7.13241060317828	6.83943875357683	6.92926402539067	7.08011824906295	-0.0370066924018473	0.886982280129945	0.973794308941933
Merged-chr4-41640292-4	chr4	41639804	41640804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027147)	promoter-TSS (NM_027147)	-2.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	2.6988615921884	2.68618520134326	2.78830401188512	2.79209453196827	2.68533629315817	2.54106006623133	-0.231865146700858	0.758714310496358	1
Merged-chr9-25504920-4	chr9	25504425	25505425	+	957.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23328.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	5.90941930504496	5.66755017690651	5.36322805179362	5.87120762890048	6.12023627287345	5.17127596033844	0.216838003489323	0.597039319522137	0.880121316304331
Merged-chr15-51734412-4	chr15	51733904	51734904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131057.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	5.08363419245565	5.19075793479249	5.00254948365993	4.98109515716842	5.28258289298484	4.95662842273808	-0.0101038976744529	0.978639033581994	0.995160277495735
Merged-chr15-63895760-2	chr15	63895260	63896260	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028992, intron 5 of 11)	B3|SINE|B2	15053.0	NR_108053	665769.0	Mm.290602	NR_108053	ENSMUSG00000093867	Gsdmcl2	4921501E01Rik|4930453O09Rik|Gm7779	gasdermin C-like 2	pseudo	3.44995769253442	3.33561078608555	3.5219079092663	3.52125703479156	3.64470824601844	3.74574677271275	0.739887070952491	0.195914530335192	0.583652434941867
Merged-chr4-66852234-4	chr4	66851732	66852732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24681.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.9175987990201	5.22724612010268	5.34595242849404	4.24881126657855	4.42334556000241	4.56056613132715	-1.75904831345383	4.25561199441987e-05	0.00138158783781385
Merged-chr2-119277149-1	chr2	119276649	119277649	+	727.75	f0_balb.idr	Intergenic	Intergenic	-5923.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	3.03785568901734	3.00095766930853	3.21756236223442	2.48308584286598	2.4637434233845	2.70679590460796	-3.48571139934618	0.000234965637444585	0.00570499584490489
Merged-chr8-43367871-4	chr8	43367366	43368366	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60857.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	2.76403037658373	2.5867377589103	2.63639108644318	3.05418591816096	2.88017074898239	3.02509545259694	1.6704333671173	0.026326805535625	0.192648940465058
Merged-chr14-120452423-4	chr14	120451927	120452927	+	848.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26034.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.13123386423129	4.02956222625999	4.2451021901996	4.03566529433748	3.89471078390763	4.08818200177987	-0.381584316758907	0.433753972889162	0.797967674446634
Merged-chr2-156311539-2	chr2	156311026	156312026	+	672.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-947.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.44218240307208	6.28346523221356	6.45042593998187	7.60238872100674	7.60438452393355	7.27740010383432	1.71517106554211	1.72428522283099e-11	2.67675979144256e-09
Merged-chr4-126200987-2	chr4	126200487	126201487	+	746.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	20.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.84900381918208	4.73335782401793	4.7037727471688	5.38825478788828	5.3589212330555	4.85629429484849	1.00105234530924	0.0120906920148275	0.11491059979095
Merged-chr5-64239941-2	chr5	64239469	64240469	+	925.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	9612.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.30632987132703	6.23900111760491	6.53223728650535	6.21857457492262	6.53005980600514	6.6236903477885	0.178708131357393	0.535863845416464	0.853668337370661
Merged-chr2-165933985-3	chr2	165933498	165934498	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49160.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.98287125876869	6.08688112646073	5.91931249806188	4.16107269251072	3.96019220238768	4.52911434093954	-4.35916913393074	1.13507525682228e-19	7.10130390749383e-17
Merged-chr4-102607031-1	chr4	102606531	102607531	+	586.0	f0_balb.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	17188.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.95908515756801	4.8230440692026	4.84028548406389	4.20743590238619	3.93691860673579	4.34092716021493	-1.8565022798971	4.46001914361689e-05	0.00143618139667985
Merged-chr7-125608023-4	chr7	125607552	125608552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	4623.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.32057481395071	4.52821340613544	4.52504542886814	4.87130712410933	5.09317189291103	4.68534481073775	0.0849536657562968	0.860542728821349	0.967588655430938
Merged-chr1-87555216-4	chr1	87554690	87555690	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	MTE2a|LTR|ERVL-MaLR	18680.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	4.75879458712137	4.75131994018158	4.9739853532308	4.86396999174665	5.19822425208397	4.9318232246008	0.422726592115962	0.282222369191021	0.680175941698657
Merged-chr1-16619351-4	chr1	16618850	16619850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-12.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	7.56054728411437	7.84691042145727	7.77104563672741	7.58336924454922	7.46858164685181	7.47551563860036	-0.321158815740442	0.160994345880166	0.533682780680334
Merged-chr17-31558194-4	chr17	31557735	31558735	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6538.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	6.03547955352894	6.16767803427185	6.36685135090327	6.12605617916382	6.22290217869551	6.15122740609392	-0.0305944019404543	0.915386244961734	0.980959026698783
Merged-chr17-43569990-1	chr17	43569490	43570490	+	1000.0	f0_balb.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1539.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	8.2531118815485	8.25373008074171	8.2415043842709	7.82463070477487	7.67790011948392	7.91725893348484	-0.631595359239469	0.00295310899152471	0.0416266801570029
Merged-chr11-106672051-2	chr11	106671551	106672551	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	43230.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	3.33009293078755	3.15768691568783	3.65898048519982	3.28643373382867	3.27375295565429	3.25718881571195	-0.46228010152353	0.46882410013549	0.818724839920395
Merged-chr4-97776856-2	chr4	97776356	97777356	+	785.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-770.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.04233379245634	5.1284375038992	5.59069180566369	5.35242025491879	5.3851963041143	5.52098455570173	0.309530773692325	0.403178116836004	0.778620543696102
Merged-chr18-67725199-2	chr18	67724699	67725699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127177)	promoter-TSS (NM_001127177)	-578.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	6.19650685448767	5.94739048340448	5.83469381153132	6.01129002149294	6.17492237391748	6.06566015657409	0.135978185453647	0.65196728183109	0.902896807825606
Merged-chr13-17836937-4	chr13	17836450	17837450	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31853.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	3.01290306393546	2.93237640359185	2.83570650416629	3.10081939881174	2.79126406137795	3.20691296964882	0.496730660096802	0.486490980697808	0.827855940662378
Merged-chr10-20056493-4	chr10	20056004	20057004	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008580, exon 9 of 30)	exon (NM_008580, exon 9 of 30)	-92416.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.12900331023182	5.98276967613989	6.04334394641246	6.29039805135178	6.30400399093145	6.29434781637882	0.410083268356763	0.140763293212398	0.501285627912947
Merged-chr1-97630257-4	chr1	97629761	97630761	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31415.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.94717383350615	4.86749931815526	4.13544637881136	4.80193163161209	4.7261176442047	4.31885392478006	-0.159255078970387	0.758802276182941	0.940287421764314
Merged-chr10-10449269-4	chr10	10448789	10449789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 2 of 36)	intron (NM_001127353, intron 2 of 36)	23025.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.9398537659896	6.02119922839593	5.60039260126429	6.18393635947998	6.53760152284945	6.27900748027569	0.796003131410183	0.0114393098564292	0.110529724179136
Merged-chr5-136088024-4	chr5	136087531	136088531	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4115.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	4.72687522239639	4.46290535186872	4.64841475048051	4.84572267945965	4.83818454137358	4.97464954645014	0.618249780185788	0.125237677683356	0.47354314333656
Merged-chr16-38457370-4	chr16	38456868	38457868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1565.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	7.71973169593465	7.47645676319129	7.53974386951488	7.65674907371499	7.75664390911771	7.35093701282489	0.0348102264943906	0.886459192308831	0.973794308941933
Merged-chr8-12672148-4	chr8	12671636	12672636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198031)	promoter-TSS (NM_198031)	-36.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	5.65754805376099	5.87920146856122	5.57055744356089	5.72034196260087	5.09399791387542	5.39381716309422	-0.544488826394566	0.13839604683735	0.497158283020873
Merged-chr11-99169039-2	chr11	99168539	99169539	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13962.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	4.65244457117346	4.71216309866668	4.39906498271143	5.27782241560446	5.05083751844192	4.20353706523805	0.734733181410314	0.157834982144809	0.529402983738641
Merged-chr4-9132294-2	chr4	9131794	9132794	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136999.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.82697948773091	3.6852245843692	3.80573285869109	3.64437000404618	3.51203532040568	3.77533012795361	-0.448515832015733	0.411005682151633	0.783785606749474
Merged-chr4-99200208-4	chr4	99199717	99200717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	6070.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	7.5171919268493	7.71529070550982	7.47783307349012	7.95957033581825	8.31568507622465	7.78442842277706	0.673105707432465	0.0074324028586115	0.0816093134150627
Merged-chr17-24779682-3	chr17	24779189	24780189	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24693.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	4.97637529031891	4.98748117604757	5.59611991323937	3.74138413431975	3.64977203611542	3.87738468067389	-4.33945187967297	2.51496555784932e-12	4.5003280459683e-10
Merged-chr4-139188122-4	chr4	139187639	139188639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.43685455923868	6.0261580350677	5.99288083568098	6.23307356207098	6.06885334937305	5.61947659655596	-0.280858990036564	0.409974872276761	0.78304118380362
Merged-chr7-83654542-2	chr7	83654049	83655049	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	L2c|LINE|L2	946.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.76787943792106	7.02273412015747	6.80480270328389	6.8764557554688	6.7872057110783	6.89267737220874	-0.0382226613481788	0.879821542265747	0.972259065950148
Merged-chr4-9060318-4	chr4	9059777	9060777	+	918.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209016.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.17979888466544	3.00719898889995	3.31547294207169	3.14948382443853	3.22926378038398	3.33191996913357	0.289831707234517	0.651486781254259	0.902848242137179
Merged-chr7-134690028-1	chr7	134689528	134690528	+	831.0	f1_balb.idr	intron (NM_001033420, intron 1 of 51)	MER44A|DNA|TcMar-Tigger	19341.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.70949765410639	5.28527856344962	5.50038619015463	5.64239255153832	5.57012952332817	5.44407168997307	0.0901450934648523	0.792803839068835	0.950051439909475
Merged-chr4-120925042-4	chr4	120924547	120925547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-42.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	7.1181530237448	7.23270594612069	7.0723651239623	7.12000093815221	7.53597363084118	7.14319752843218	0.217152639471064	0.399298121312035	0.775774492880074
Merged-chr11-103028430-4	chr11	103027920	103028920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-123.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	8.11291955529057	8.08230325066332	7.65130455061274	8.22542601551932	8.52289864449411	7.82881667237249	0.36658885555805	0.185046289211389	0.569091204638575
Merged-chr17-21733737-5	chr17	21733249	21734249	+	859.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164676)	promoter-TSS (NM_001164676)	25.0	NM_001164676	381067.0	Mm.482723	NM_001164676	ENSMUSG00000061544	Zfp229	-	zinc finger protein 229	protein-coding	5.24238228512842	5.35924642851252	5.48476345660482	5.20156342465934	5.31218473599608	5.10989018281799	-0.28132497928691	0.423274035568699	0.791868419997774
Merged-chr7-143624777-4	chr7	143624292	143625292	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	3053.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	4.63857511049731	5.100704010572	4.568974799797	4.48543277693579	4.66444028367061	4.67838021677866	-0.443844869134836	0.312351288100051	0.707123550253801
Merged-chr12-103333078-4	chr12	103332580	103333580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 6 of 9)	MIR3|SINE|MIR	18121.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	5.17525858755914	4.41849955295953	4.78890695598744	4.93489706042422	4.78156576706099	4.60874832981435	-0.116098852040646	0.800045793686856	0.952408432552781
Merged-chr2-52422746-2	chr2	52422246	52423246	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	2128.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	5.08821545341016	5.2260887461299	5.04297052781809	5.17750249296037	5.05395328326366	5.33504613662901	0.118526497272371	0.744454000099719	0.935982277711273
Merged-chr2-35196068-4	chr2	35195577	35196577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	B1F1|SINE|Alu	5043.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	5.58128804351765	5.61663840129028	5.82757165334232	5.91949485352164	5.7303691654243	5.88876206104252	0.314181861555282	0.315806002905992	0.710070686351278
Merged-chr11-69669407-2	chr11	69668907	69669907	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 4 of 10)	intron (NM_001159375, intron 4 of 10)	3016.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	4.58789973707091	4.4965649760555	4.67885614989548	4.67408218174158	4.5815402194866	4.99146980293231	0.38836919756803	0.357561461015018	0.744171436921902
Merged-chr6-38875457-8	chr6	38874961	38875961	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	729.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	7.61927743048289	7.86230429116992	7.80865108551125	7.8338723464633	7.74621473265761	7.69267694518741	-0.00947019466887248	0.966076373479568	0.992210797624133
Merged-chr6-50378668-4	chr6	50378163	50379163	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	4174.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	7.44521438600218	7.35975161441195	6.95108562264707	7.48799617430131	7.73310585223132	7.25300518477032	0.346993517241427	0.204382161698547	0.594949662456522
Merged-chr4-10873622-1	chr4	10873122	10874122	+	980.0	f1_balb.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-876.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	4.19020065060989	3.86664718545643	3.85592071310189	4.2740600410657	3.92947507599012	4.2649903437874	0.49986076919989	0.335009907340367	0.725339338581532
Merged-chr11-75629486-2	chr11	75628986	75629986	+	950.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008850)	TTS (NM_008850)	-1534.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	3.73085280141368	3.92374740641256	4.20417892692122	3.92292683086961	3.91305162529784	4.35169845078982	0.325615136752706	0.544595111721686	0.857842459036386
Merged-chr9-108991789-4	chr9	108991280	108992280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173019)	promoter-TSS (NM_173019)	-122.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	6.12227689437616	6.50400591269088	6.51282151559467	6.41298459228328	6.6673719699583	6.68623127231397	0.332351674542746	0.249015227803277	0.645963956644956
Merged-chr9-118697823-2	chr9	118697352	118698352	+	691.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-13840.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.69869725820668	2.80158161505489	3.01646213728459	2.90969203891882	2.58393680565043	3.35352512682343	0.657579048364152	0.409221125601736	0.782609453389411
Merged-chr4-156032533-1	chr4	156032033	156033033	+	619.0	f1_c57bl6.idr	Intergenic	Intergenic	6211.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	4.15477537855647	4.18343270742057	4.25587941843203	4.70237880773976	5.24048556280551	4.94421520404265	1.9418358637235	1.35027584783255e-05	0.000519194790880086
Merged-chr10-59252144-3	chr10	59251633	59252633	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30211.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	3.8230384221436	3.85192849619312	3.84896981675267	3.55977445062766	3.40803816202912	3.71822577493342	-0.975724603617731	0.0783594055434332	0.369642803813027
Merged-chr6-29536092-2	chr6	29535592	29536592	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012057, exon 7 of 9)	exon (NM_012057, exon 7 of 9)	6810.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.06010163651118	4.10288908209417	4.45840583359354	4.0537427929086	4.38402058912801	4.52386971182244	0.328721652385901	0.50483486344178	0.837836810464043
Merged-chr12-98215763-3	chr12	98215262	98216262	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 12 of 16)	intron (NM_008079, intron 12 of 16)	43697.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	2.85109771029411	3.2263390312047	2.95180528750696	2.81764426047044	2.66840443079598	2.83997005350557	-1.25496958457208	0.0898002308896504	0.398318277586379
Merged-chr3-95635769-4	chr3	95635268	95636268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10788.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	7.29972150802691	7.05401435039003	7.25443490108991	7.12049081032553	7.48069960280519	7.02183268894195	0.0436029606531284	0.868322893487325	0.969642939011354
Merged-chr15-58691611-2	chr15	58691111	58692111	+	942.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131816.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.61981015550266	4.7930311618411	4.72541253801726	4.56503386622933	4.61412582104607	4.41325426309529	-0.415484927656634	0.319224855417324	0.713266964811081
Merged-chr13-100452595-4	chr13	100452117	100453117	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	intron (NM_008670, intron 1 of 15)	247.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	5.84374826009818	6.27009504882252	6.20063902438052	7.51783489738207	7.85575785313616	7.71341478046029	2.45062549587401	1.10052784524167e-18	5.87004621454286e-16
Merged-chr5-5367122-4	chr5	5366567	5367567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	13184.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.505808119288	7.11850175542355	6.53295012900713	7.35738788346448	7.48184184741693	7.25488802811182	0.917326417864057	0.00177552530809656	0.0281727516849921
Merged-chr8-126683732-3	chr8	126683231	126684231	+	875.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90295.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.87161598591581	3.79554536250186	3.54255431380637	3.6842463963619	3.64620032954838	3.72489355990336	-0.23001247501905	0.6756948256076	0.912283739388921
Merged-chr2-60020044-4	chr2	60019528	60020528	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	MTE2b|LTR|ERVL-MaLR	105712.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.40674967096968	6.36275487955755	6.29877390539007	6.1664878027636	6.34852495792377	6.0809121185428	-0.241560239824589	0.388868975068267	0.768757717733778
Merged-chr11-95860155-2	chr11	95859655	95860655	+	886.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045187, exon 2 of 2)	non-coding (NR_045187, exon 2 of 2)	1338.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	5.77876961738554	5.80682284972503	5.47974948778176	5.52659097972341	5.81142892577988	5.54344790840361	-0.115436599143469	0.72926670037254	0.930601789377265
Merged-chr13-43399677-2	chr13	43399177	43400177	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023554, intron 3 of 7)	intron (NM_023554, intron 3 of 7)	1301.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	4.26977753958049	3.72319766049951	4.19935596222486	3.98989693673263	3.74178362717202	4.08823883313733	-0.420520756706726	0.440702168599176	0.80190131151537
Merged-chr4-47347230-4	chr4	47346722	47347722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6000.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.84564386474214	4.55253612147769	4.44669356521935	4.70630208926981	4.88970162135326	4.37306660909875	0.125271139151841	0.782277598045115	0.946484752418558
Merged-chr15-6384196-3	chr15	6383687	6384687	+	971.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-2561.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.30152850516799	5.2685980766867	5.30256346665647	4.83173569314995	4.6147722871858	4.97408351725162	-1.05300661434165	0.00528560726193454	0.063561381357197
Merged-chr16-11136495-2	chr16	11135995	11136995	+	702.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145931)	TTS (NM_145931)	-1963.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	4.07992462918192	3.95453082088709	4.08461722143687	3.94334798727661	3.88400106064023	4.63015655580277	0.418748052830357	0.442276962598611	0.803181682356779
Merged-chr10-94047266-1	chr10	94046766	94047766	+	576.0	f0_c57.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	11265.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	4.01444328439023	3.85878678183777	3.82725848716429	4.39334137320026	4.90814907486407	4.72803306417234	2.137007072012	1.98206098459464e-05	0.000725256510141385
Merged-chr9-67840361-4	chr9	67839876	67840876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-20.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	6.90424980241692	7.31974451455753	6.99396649610568	7.0353429538692	6.98325842410785	6.91117634977073	-0.169429487984477	0.514512437698456	0.843107848235413
Merged-chr1-153910072-3	chr1	153909531	153910531	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008131)	TTS (NM_008131)	10102.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.14281690439412	5.037354223825	5.38505159551618	5.11426770645278	5.20097252992411	5.33154168285241	0.0590049980764923	0.870988013273925	0.970222087171093
Merged-chr11-120354644-2	chr11	120354144	120355144	+	879.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	5966.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	6.14939824865452	6.13894882793038	6.17800002867513	6.08493616180073	5.99254544530192	5.73556559795459	-0.341581284498606	0.24913047453736	0.646125628067969
Merged-chr10-82623062-8	chr10	82622508	82623508	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001135567, exon 1 of 3)	5' UTR (NM_001135567, exon 1 of 3)	220.0	NM_001135569	544717.0	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	7.04192638437889	7.17941142435673	6.47509108412648	7.53714662805731	7.62165707741145	6.74499507188342	0.633674138524129	0.0653503225543565	0.333333515546061
Merged-chr18-62250708-4	chr18	62250202	62251202	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70602.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.09892255869884	2.95394097097177	3.16037195664362	3.24873811321114	3.36883304726533	3.50503280356616	1.29354165793568	0.0449401817913722	0.267329811995876
Merged-chr1-64301447-7	chr1	64300963	64301963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180074.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.97037054953171	8.20792229467024	7.96828664451253	7.83423904324317	8.14238803002008	7.72488053404467	-0.192117380734557	0.422588917399363	0.79138410692668
Merged-chr17-29397110-4	chr17	29396651	29397651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36237.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.8440019750999	5.65281936430917	5.74109231588887	6.27520219332516	6.40781618011362	6.5337325017461	1.12527745178739	0.000125771660022413	0.00344258580962368
Merged-chr16-23287488-4	chr16	23286986	23287986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2984.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.33853580254001	7.35800478303771	7.17542188979517	6.95222487584604	7.13603775674668	7.10787607384548	-0.343904529650985	0.149412584840535	0.51586399831582
Merged-chr9-75314225-4	chr9	75313726	75314726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073186, exon 1 of 12)	non-coding (NR_073186, exon 1 of 12)	158.0	NM_138719	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	5.65189510261645	5.75003095904115	5.42194077264791	5.22401101225718	5.11969879794433	5.08290594661663	-0.940186797066116	0.00660922421179024	0.0749543857454875
Merged-chr14-34311925-2	chr14	34311425	34312425	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1198.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	6.18894626883425	6.71057865178749	6.38312789158543	6.82589428730335	7.09155170084331	6.80477527704049	0.735558704382407	0.0117753786856235	0.112725001112904
Merged-chr14-54741785-2	chr14	54741285	54742285	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-29611.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.87290358570861	5.00635023011006	4.57764738904883	4.16807424613291	4.23977583623132	4.56138588664326	-1.2730391719009	0.0046996640015762	0.0586594866414163
Merged-chr5-105662874-3	chr5	105662433	105663433	+	843.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-37036.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.18188958881958	6.25009666714955	5.95561065498741	4.62694405871292	4.33633923878386	4.54872456259187	-3.49118644618211	1.75261671089294e-18	9.11448320499872e-16
Merged-chr7-59163434-4	chr7	59162926	59163926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65324.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	4.57984898616906	5.1237040566308	4.91038357486797	4.84533935161698	5.11711429514418	4.97563547503308	0.205538814850781	0.619925751287211	0.889979882381751
Merged-chr19-41317438-1	chr19	41316938	41317938	+	545.0	f1_balb.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-53434.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.36580709111763	2.54420859844296	2.61066567601681	2.6801573339	2.46598104047564	2.68438883652843	0.593648697609891	0.456158512405148	1
Merged-chr4-53414182-4	chr4	53413678	53414678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26235.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.07199145353143	4.01423439662046	3.92862067356003	4.09334255028411	4.07674499724913	3.89478657104387	0.0603484368596502	0.902756625174479	0.977585531827525
Merged-chr2-14336036-1	chr2	14335536	14336536	+	897.3333130000001	f0_balb.idr	Intergenic	Intergenic	-52362.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	2.60030031422586	2.69233543335704	2.79810590180543	2.75893377395174	2.52236494162028	2.87078088981813	0.124786800025681	0.86984060745215	0.969901645415424
Merged-chr1-161252019-4	chr1	161251522	161252522	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-812.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	3.95024558010454	3.83083516633732	3.59408964280106	4.10728099939391	3.84059342914049	3.83548615937712	0.393762747814223	0.468030675874205	0.81828661283705
Merged-chr14-45219555-4	chr14	45219074	45220074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	-143.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	7.68676727687583	7.70849643042147	7.4583571746365	7.65417130270879	7.47239540719289	7.68019063914892	-0.0401668682030084	0.861843367159344	0.967996224966109
Merged-chr9-122293375-2	chr9	122292875	122293875	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 1 of 12)	B4A|SINE|B4	1048.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	3.99516171343436	3.87557026908236	3.79065937387581	4.07358337192872	3.88165777499461	3.75275033077117	0.0580526690785049	0.911399375869744	0.980098870307889
Merged-chr9-110709931-4	chr9	110709410	110710410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028312, exon 4 of 7)	exon (NM_028312, exon 4 of 7)	32700.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	6.04708805653747	5.8017382469989	6.03682600044564	6.19007458252948	6.31305450887945	6.26589098564866	0.505807902788325	0.0804187131971352	0.375293341991432
Merged-chr12-85177311-4	chr12	85176764	85177764	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008827)	promoter-TSS (NM_008827)	49.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	2.74695556020915	2.64249639522514	2.80584383429417	2.72347890218059	2.70124163928717	2.69410870731629	-0.128104021065579	0.860950141253607	1
Merged-chr18-34181381-3	chr18	34180854	34181854	+	901.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39630.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.39188522456522	3.37235810371806	3.33190865459602	3.78871510720459	4.00029435471947	4.33335163018508	2.3683724585974	9.30090395355557e-05	0.00266681466632478
Merged-chr16-43951813-4	chr16	43951301	43952301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	27249.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	5.84592269071222	5.74192751243434	5.81685182353546	5.58592753114152	5.60069530152361	6.1399727652966	-0.0243615641229081	0.942585230902514	0.987202156853573
Merged-chr12-102284764-3	chr12	102284251	102285251	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	1110.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.42185309967489	3.33164702114799	3.25701707863513	3.36151660087877	2.91228231776976	3.32942381124976	-0.517743158516631	0.441409462912997	0.802597583509352
Merged-chr13-113914451-4	chr13	113913960	113914960	+	820.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119952.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	6.88549461293866	7.50854008164873	6.671279345269	7.17874225930012	7.4484330399024	7.22414541477086	0.307730461943673	0.323879666552352	0.717120257969349
Merged-chr10-17661416-2	chr10	17660916	17661916	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61812.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.25673928955212	4.20609274474141	3.69196180484628	4.07315876930575	4.0496679503245	4.18583564770277	0.0437105603714288	0.934639193911867	0.985727536128156
Merged-chr13-37346034-4	chr13	37345518	37346518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	673.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	8.56146066304386	8.67687077482911	8.2969078636669	8.66306095980699	8.98509506076637	8.37577677146577	0.252023344636422	0.319126600225769	0.71309158347113
Merged-chr5-148379683-3	chr5	148379180	148380180	+	940.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 1 of 12)	intron (NM_007513, intron 1 of 12)	13135.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	2.33095253203335	2.18540970658519	2.40158781534405	2.51826228054239	2.64948179243737	2.728050235966	2.18120829544348	0.0133290700502424	1
Merged-chr12-87442763-3	chr12	87442264	87443264	+	734.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013372)	TTS (NM_001013372)	1075.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	7.25416314387601	7.41315439874492	7.13198146929456	7.75141685514916	8.12170849866132	7.4533718214179	0.784054414008899	0.00389656813804074	0.0509308265205929
Merged-chr18-12731563-4	chr18	12731081	12732081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-9774.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.61398323958198	4.46478710898861	4.70785449232282	4.87256420644875	4.78306905765021	4.84884135520713	0.564055524685724	0.161010444832673	0.533682780680334
Merged-chr6-83053802-4	chr6	83053278	83054278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-743.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	8.0459834495816	7.88976378355448	7.56512076026222	7.96799083078784	8.07904143945174	7.30476669903435	-0.0245107338798831	0.933355949391612	0.985421880379249
Merged-chr8-122556808-4	chr8	122556329	122557329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	7.22602549621831	7.3915822614548	7.59160317081824	7.8218916938643	8.14953013887526	7.57117094115297	0.683189583864331	0.00946215032088185	0.0967231700122773
Merged-chr3-144569314-2	chr3	144568814	144569814	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	902.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	5.58614173169151	5.57056449850791	5.43354231628531	5.75473909528562	5.67422447107131	5.74968561488615	0.344545708909916	0.275757737347278	0.673242318833586
Merged-chr2-69778218-4	chr2	69777727	69778727	+	808.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	11259.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	4.31882932142943	4.5652257102625	4.27966916365873	4.51891817491573	4.38703575031711	4.64559613724282	0.282686569097995	0.526587078191915	0.849575940031528
Merged-chr18-62188939-4	chr18	62188412	62189412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8812.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	8.29246617260092	8.22737949954643	8.17546880517994	8.21531618597363	8.45354355550647	8.35632989331322	0.158258999104331	0.449916107684556	0.808013574003465
Merged-chr4-101656261-4	chr4	101655768	101656768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175036, exon 3 of 4)	exon (NM_175036, exon 3 of 4)	8485.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	7.30302247849749	7.59970330573894	7.36730962752391	7.71910626982494	7.94466011308493	7.64845594656065	0.507293471499861	0.0347311688336439	0.228487594584902
Merged-chr11-107466138-4	chr11	107465631	107466631	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4|SINE|B4	4589.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.14409170205064	5.82254610724276	5.95592193454977	6.32446179200912	5.95792717563821	5.99359456831999	0.208042952363913	0.5052819129334	0.838055364884185
Merged-chr15-59389439-4	chr15	59388935	59389935	+	909.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	15237.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.08680853639864	3.90300821725555	3.94996522552545	3.80960757402787	3.41302559576161	3.87232630288812	-0.895908424561078	0.110027331895642	0.443363350300229
Merged-chr11-119490786-2	chr11	119490286	119491286	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177394)	promoter-TSS (NM_177394)	449.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	3.86153914204839	3.62000626151519	3.96202750898712	3.84854933973314	3.74039865312668	3.73315420739428	-0.131168633774658	0.80692432428484	0.954399610026228
Merged-chr12-3308624-4	chr12	3308111	3309111	+	633.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	1358.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	6.56062804438691	6.7705067395411	6.60554802129562	7.18961361018157	7.22061060259544	7.00291913475001	0.760755910266988	0.00254542777017658	0.0372166497805048
Merged-chr6-122811884-4	chr6	122811384	122812384	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8300.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	7.47613606107798	7.68472660031417	7.49289490698228	7.59217924955345	7.72757247082861	7.56963635232467	0.112946830492114	0.619332651466948	0.889749463061948
Merged-chr7-110372700-4	chr7	110372219	110373219	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 19 of 40)	intron (NM_177324, intron 19 of 40)	151016.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.19398980013998	4.95502102129621	5.25778174789174	4.97941232720136	5.08783766704987	5.29046735794076	-0.0349886015007364	0.925259021956688	0.983166193538686
Merged-chr5-92509859-3	chr5	92509370	92510370	+	666.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4213.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.05675837434505	5.69613141030074	6.0153655181401	6.22039634046729	6.30583868543878	6.07639462141785	0.485091029329098	0.110008656526948	0.44335950267821
Merged-chr11-85324102-3	chr11	85323587	85324587	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	12833.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	3.90374612547127	3.57453151544839	3.86467161645956	3.76537144896184	3.73345123831978	3.50567328155667	-0.35600402899651	0.527762107157406	0.850108008834301
Merged-chr8-66341012-3	chr8	66340521	66341521	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-45280.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.84296263905385	4.82369897514743	4.67953684340995	5.06549922209988	4.88719635180468	4.90431355888491	0.364707346430814	0.346199647468784	0.734515828466387
Merged-chr4-136125210-1	chr4	136124710	136125710	+	647.0	f0_c57.idr	Intergenic	Intergenic	-18612.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.5522413641396	6.45319834541872	6.52623738189885	7.08032675373957	7.20720301015177	6.60402459675736	0.766793632421749	0.00667952918799176	0.0755171141872328
Merged-chr9-88481346-3	chr9	88480809	88481809	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284328, intron 1 of 11)	CpG	1088.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	6.22367380150118	5.37847945325359	6.25701323508606	5.91501055353768	5.39333477581879	6.12507747363095	-0.296467819633093	0.47210970670174	0.820487582506336
Merged-chr8-125734222-4	chr8	125733720	125734720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	17.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	7.25717798141395	7.18333395507512	7.0610078444246	7.02058359934523	7.20269263523678	6.8787439814426	-0.186042392047161	0.455137956319143	0.81080583774521
Merged-chr4-43556116-4	chr4	43555631	43556631	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 3 of 56)	intron (NM_011602, intron 3 of 56)	6452.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	4.49759547421752	4.23330211205567	4.64303166676647	4.16137271961954	4.24322004926795	4.47699056026425	-0.436277721876971	0.349057038779296	0.73710287140402
Merged-chr19-28678125-6	chr19	28677644	28678644	+	914.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-80.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	5.92961209419969	5.87124399503003	5.77823389407043	5.09785649819804	4.94134734224182	4.888606777888	-1.73015828070677	5.37208350792459e-07	3.1302543734411e-05
Merged-chr8-25990226-6	chr8	25989683	25990683	+	923.288879	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	intron (NM_029037, intron 1 of 4)	3938.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	4.21949290485104	4.05251340620298	4.16566167889616	4.19340109939263	4.27843604165419	4.36661330347895	0.363577278540093	0.432396676402903	0.797340659568202
Merged-chr2-173022413-4	chr2	173021928	173022928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019547, intron 1 of 3)	CpG	526.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	5.28058796671161	5.25779391779408	5.33790157502519	5.33209845374613	5.07322689984158	5.03512492927612	-0.273373179912165	0.443923693906623	0.803884349333946
Merged-chr8-119877307-2	chr8	119876807	119877807	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146219)	TTS (NM_146219)	15002.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	2.58202000438857	2.50843448881912	2.76286291530573	2.47479811054972	2.46364746660882	2.77676427969088	-0.248792205719158	0.753612155063218	1
Merged-chr19-55658153-2	chr19	55657653	55658653	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	RSINE1|SINE|B4	44051.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.45009360985097	6.12536934498978	5.86088470653383	5.56759390601127	5.59920958492283	5.68336275094774	-0.99731309990827	0.00226974997635185	0.0340229428989884
Merged-chr7-99139959-6	chr7	99139484	99140484	+	904.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1160.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.03217998850488	6.90104061253881	6.99716703279121	7.06668648392784	7.20262549554944	7.2175940394297	0.283878806373196	0.234417021082509	0.630514517872716
Merged-chr3-88610769-3	chr3	88610275	88611275	+	732.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5432.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.04640484484637	4.28677163730007	4.13428625873538	4.35733990730986	4.2138786760016	4.38321050907797	0.414881799786671	0.373709418880755	0.757546812967132
Merged-chr15-76477833-2	chr15	76477333	76478333	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013481)	promoter-TSS (NM_013481)	471.0	NR_138589	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	6.11367831922479	6.47170023580409	6.29961103097526	6.09653352131061	6.2423452494335	6.45164992872266	-0.0662216926550558	0.82280600290876	0.958153338614688
Merged-chr13-6647873-4	chr13	6647366	6648366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	905.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	6.67618680323157	6.90226730170547	6.61399000703419	6.57770670821403	6.78336439015927	6.35523640699331	-0.229831532960929	0.412623169054141	0.784551818322662
Merged-chr10-82083391-5	chr10	82082918	82083918	+	789.609558	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35291.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	4.76319162780103	4.44943183094042	5.00331592327555	5.60444942990845	5.43230588592635	5.27078539895374	1.48188977674851	0.000191425219550614	0.00483114218357777
Merged-chr3-98087738-4	chr3	98087249	98088249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	-72885.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	4.85601710833555	4.74074033576415	4.92652024063112	4.90148100420073	4.9359003750729	4.9911427559178	0.230157653664522	0.545366469201614	0.858082844893122
Merged-chr6-24703720-3	chr6	24703229	24704229	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29516.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	4.39840345059018	4.79922062135413	4.3815357137312	3.89650207303708	3.78852508526393	3.9707118342061	-1.90420994274165	0.000148840859285925	0.00395047853890375
Merged-chr11-69980695-4	chr11	69980204	69981204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-374.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	8.19044324882729	7.84222828285224	8.11144521244111	8.20182243678361	8.07728653682748	7.90089370109249	0.019696603874014	0.932350595806207	0.985087224393733
Merged-chr15-63540416-4	chr15	63539933	63540933	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-60825.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.45457815101676	3.14597995165881	3.32914548509698	2.97599618527763	3.0293374594395	2.98961643314882	-1.39393688103249	0.0388421863006692	0.244380884606032
Merged-chr5-65717590-4	chr5	65717092	65718092	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19736.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	5.64749116982653	5.50538023932268	5.81088995262399	5.9634669060953	6.19060556714139	5.84767478927103	0.656965123228141	0.0382321122446147	0.241954487043649
Merged-chr6-86398216-2	chr6	86397716	86398716	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	6.44648213811155	6.17968702899988	5.9975259707617	6.46870128953328	6.35329404690991	5.93296284500885	0.0861605640089999	0.787030768443158	0.948693859994902
Merged-chr15-96655689-4	chr15	96655177	96656177	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-12764.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	6.15242917894537	6.15794622717944	5.90746879206481	5.99316764059345	5.94582319544869	5.41582970077938	-0.450823223977289	0.179013922724245	0.560351002346369
Merged-chr15-58215449-4	chr15	58214958	58215958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-566.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	8.5044951572928	8.68596423686082	8.61050103011056	8.41323343163389	8.67587233538529	8.27757770624548	-0.179642994050575	0.418480240162634	0.788591657834186
Merged-chr8-83973554-1	chr8	83973054	83974054	+	1000.0	f1_c57bl6.idr	intron (NM_008854, intron 1 of 9)	intron (NM_008854, intron 1 of 9)	576.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	4.84841336748801	4.24162646057625	4.74989504996986	5.19757106448494	4.54649286046134	4.73821906144421	0.498294792409843	0.299897548146418	0.696626983785131
Merged-chr4-142080764-2	chr4	142080264	142081264	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-3534.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	6.93156937233361	7.1321282651395	6.94822934441558	7.33365477306264	7.38253550629883	7.02055524239526	0.381162037785958	0.131451913599588	0.484747865041418
Merged-chr6-29468806-2	chr6	29468306	29469306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	1023.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	7.1312348049747	7.09087766684983	6.74231483185661	6.95229999204038	6.63995401918711	6.57837740172467	-0.418540994715684	0.129089476163418	0.480551052818794
Merged-chr9-20998511-4	chr9	20997964	20998964	+	956.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4273.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	5.82544402863641	5.63006157249904	5.55181492091205	5.83707571779196	6.01716555794547	5.58561899867374	0.285727876935899	0.385637751389965	0.766626026463756
Merged-chr17-24781066-3	chr17	24780549	24781549	+	931.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23333.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	4.11223913489756	3.90831643267447	4.19873125528323	3.11499063863832	2.94103430057974	3.24756338378465	-4.93318540139481	2.01882311845587e-07	1.3247810255558e-05
Merged-chr4-9682723-4	chr4	9682246	9683246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13402.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.25336283493783	6.36280982401736	6.00111048697564	6.75464023849393	6.57353235334743	6.48702371599323	0.627688535487621	0.0275688855967326	0.198010516420624
Merged-chr12-82276032-4	chr12	82275531	82276531	+	933.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-35318.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.76641245931442	4.96032045152851	5.52011632927704	4.87403940453033	4.57130740106595	4.90585344122261	-0.708786480669558	0.108682185640281	0.440488421955992
Merged-chr2-128749754-2	chr2	128749254	128750254	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	B1_Mur3|SINE|Alu	50839.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.46715568744818	6.43060114042789	6.45779811967423	6.43423029697693	6.61850084128213	6.46252709924732	0.100265905481256	0.70435145161674	0.922392522355862
Merged-chr12-79525719-4	chr12	79525219	79526219	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	228368.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.0164051985964	3.9162035747644	3.72233852486773	3.63325502329972	3.95665626739194	3.56582668717742	-0.48679706158053	0.39091754601045	0.770052731867201
Merged-chr10-16593087-4	chr10	16592586	16593586	+	953.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	502696.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.74457423766003	2.81952491200746	2.92647144791276	2.74210632704137	2.92087825173045	2.62635811063461	-0.274482347604261	0.714389410584521	0.925873245006649
Merged-chr8-111941361-1	chr8	111940861	111941861	+	788.0	f0_c57.idr	intron (NM_026693, intron 2 of 3)	intron (NM_026693, intron 2 of 3)	658.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	5.69943731351777	6.05374333258956	5.86324445040625	5.54814299686276	5.7442897280539	6.10127871544637	-0.131604443803039	0.697009457479261	0.919795142860633
Merged-chr7-128399704-4	chr7	128399202	128400202	+	818.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	MTC|LTR|ERVL-MaLR	18470.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.52891822830677	4.70907167364866	4.85178771712733	4.26225406318582	4.61497345754678	4.62063216455151	-0.44831625267113	0.307931382103483	0.703947279446131
Merged-chr7-35396922-4	chr7	35396393	35397393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178643)	promoter-TSS (NM_178643)	-126.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	5.44847425294939	5.82036934718221	5.25549700851862	5.04390896982089	5.13380600384758	5.41404255141032	-0.672990740140517	0.0742023477921956	0.358300194701312
Merged-chr5-64297745-2	chr5	64297245	64298245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	67388.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.65799273272296	5.44646406601238	5.28847725319222	5.83452489479648	5.97848173743746	5.42131272045003	0.549475641157817	0.122124834861736	0.467443914585553
Merged-chr9-7845014-2	chr9	7844514	7845514	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-7957.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	2.57729340710117	2.78644161504405	2.89986324088806	2.81183195019471	2.81032696749425	3.08527095332403	0.734958038020234	0.323068336125665	0.7164677535273
Merged-chr1-58720941-4	chr1	58720428	58721428	+	860.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	7642.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.97436530118375	6.92282326173931	6.77690247996758	6.91330484439371	6.89376946240054	6.70701463748121	-0.08052767603056	0.748557251344579	0.937061013186316
Merged-chr8-88317330-1	chr8	88316830	88317830	+	741.0	f1_balb.idr	intron (NM_001037724, intron 12 of 27)	intron (NM_001037724, intron 12 of 27)	23126.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.17621898195448	2.29594915400355	2.3753758964351	1.92241610699825	1.89778410507211	2.19479072313169	-2.36705432212457	0.0261664290648994	1
Merged-chr2-152707740-4	chr2	152707187	152708187	+	933.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159551, exon 13 of 13)	3' UTR (NM_001159551, exon 13 of 13)	20539.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	5.78001406104267	5.9334863171727	5.68377206807106	5.89369377801946	5.84052868261625	5.87579312979458	0.102979213790919	0.735217462716409	0.932617455907478
Merged-chr2-25372267-4	chr2	25371780	25372780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290407, exon 1 of 6)	5' UTR (NM_001290407, exon 1 of 6)	245.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	2.97276091386149	3.43842219355054	3.22907861580712	3.33316154874947	3.37273375495585	3.05610577117758	0.139397453634353	0.839482927390282	0.962784121274377
Merged-chr10-19570955-4	chr10	19570472	19571472	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-20977.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.57752422727354	6.57088801748792	6.58307165466973	6.79986867714487	7.01642221336037	6.92013467684326	0.534391722437692	0.0339444525919839	0.225415004890167
Merged-chr7-92876788-4	chr7	92876308	92877308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	1555.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.53227582015386	6.61977404500565	6.41130129397622	6.70459234422469	6.84156474661309	6.71592334286299	0.36217103012025	0.162348290593166	0.53582993535478
Merged-chr7-7278300-4	chr7	7277786	7278786	+	973.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003555)	promoter-TSS (NR_003555)	3.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	5.48032716351313	5.4855803771929	5.48954643661681	5.67505028554452	5.5679241985119	5.66334854681552	0.279007163363245	0.381394275869512	0.763085068523772
Merged-chr2-19038365-4	chr2	19037873	19038873	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40054.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	4.93076210011891	4.69807385159618	4.88151540356717	4.71070792160365	4.89217730817803	5.14699335098778	0.183696899353514	0.647726729996229	0.901510214793849
Merged-chr15-100613829-4	chr15	100613376	100614376	+	979.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045701)	TTS (NR_045701)	1234.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	6.47325610741031	6.56527130472374	6.23306965006883	6.37534343224748	6.42783768671082	6.06769138815651	-0.211036011863491	0.468706809190112	0.818694631884688
Merged-chr16-19975582-2	chr16	19975082	19976082	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	7467.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.9131677650597	3.91044904118805	4.00768862168382	3.83375576229216	3.83980832815458	4.41219481512659	0.308661986071289	0.565245335428215	0.866599059240356
Merged-chr1-54926421-4	chr1	54925927	54926927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081433)	promoter-TSS (NM_001081433)	-40.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	7.46981423098739	7.51024565835621	7.42982159006708	6.95884423646805	6.89382664675199	6.93037355498491	-0.818121939777539	0.000385531484074346	0.00854914061738875
Merged-chr19-6458572-2	chr19	6458072	6459072	+	817.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	39834.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	2.24294979286458	2.28586423234328	2.30705683824065	2.47117612134232	2.27677604021038	2.57360638721905	1.06475260125756	0.207789582222904	1
Merged-chr12-111759875-3	chr12	111759380	111760380	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	1012.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	5.29283617474491	5.38931410525002	5.43883396977221	5.27411078697376	5.25847783754124	5.15624257100695	-0.273382831435715	0.425343845438238	0.793032706839624
Merged-chr7-44378500-4	chr7	44378002	44379002	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	3.73353775206091	3.70851185471762	3.82912497020769	3.69557066163857	3.44253843737684	3.64423257434749	-0.556882120784569	0.31371904218253	0.708132564679568
Merged-chr1-75400480-2	chr1	75399980	75400980	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	395.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	4.93428518425998	5.2518843009904	4.90507754501031	5.11877111344452	5.11282899303153	4.93297517289881	0.0300933909154832	0.937353341649447	0.986057836872162
Merged-chr9-77910732-4	chr9	77910257	77911257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6608.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	9.2340412196819	9.32575579415421	8.80573038766397	9.1725825633143	9.29515673333106	8.46808878037744	-0.149980487752617	0.600605593279215	0.881747178918412
Merged-chr1-74240361-4	chr1	74239914	74240914	+	708.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	3897.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	5.88000232148763	5.89707408982945	6.11888383690894	5.95684622296804	6.33362534775021	6.11547015011813	0.327951716758626	0.281459255627487	0.679658185102209
Merged-chr3-35931903-3	chr3	35931405	35932405	+	756.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	429.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	6.84851078744593	7.08004102017286	6.89764129294487	7.05944362927901	7.04667659123908	6.54373472624849	-0.0487179636997918	0.860851795217906	0.9676427717189
Merged-chr11-58092886-6	chr11	58092418	58093418	+	884.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11052.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	5.89709585115995	6.27396142045737	5.99806841824379	4.98858915426032	5.5119753926916	5.22772459237433	-1.46486519006119	6.35815899659645e-05	0.00193720136868838
Merged-chr8-46921320-3	chr8	46920818	46921818	+	597.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65569.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.54384958524597	3.33125359890792	3.28323645998614	3.22493844792447	2.96444231907709	3.46546164821807	-0.668159340536816	0.316533668534904	0.710612278530442
Merged-chr2-167483304-4	chr2	167482822	167483822	+	883.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170756, exon 3 of 3)	3' UTR (NM_170756, exon 3 of 3)	-9323.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	5.51930821228815	5.30762766902748	5.26902616043364	5.48474429812375	5.63440219772129	5.04543613672264	0.103287763460394	0.781968196177138	0.94634558043998
Merged-chr5-3421411-4	chr5	3420911	3421911	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	L1_Mus1|LINE|L1	77518.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.81424241690844	6.58421869238332	6.56224815780815	6.64526920364597	6.68867684556448	6.85763883647301	0.10284222634813	0.696000520586651	0.919291538728398
Merged-chr6-50375839-4	chr6	50375345	50376345	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	6992.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	4.27682873903929	4.03676193966286	4.25445999657746	4.53129838461196	4.55094000578282	4.41279511267237	0.825912743181123	0.0671346038547931	0.338738470532389
Merged-chr4-120881233-4	chr4	120880741	120881741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	26442.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	7.17098727458056	7.00270312115549	6.78268823632625	6.79720922759466	6.95701930054657	6.81015831354383	-0.218243383490468	0.399538726342645	0.775915942094585
Merged-chr1-78703107-4	chr1	78702626	78703626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44686.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	5.6134720049817	5.55790184473336	5.59939672289448	4.29342241731693	4.21770152189809	4.51286643687289	-2.90340027347967	2.33895876064931e-12	4.20345746341485e-10
Merged-chr6-17628433-4	chr6	17627913	17628913	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8597.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.5115517555988	6.64922444123861	6.55125371842834	6.3926342027681	6.72454660862879	6.90011517566592	0.177305557250712	0.526287462984823	0.849393421135098
Merged-chr11-120713347-2	chr11	120712847	120713847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153545)	promoter-TSS (NM_153545)	420.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	4.20264872578254	4.20219179169514	4.2619021897894	4.22959636003066	4.28268498818444	4.14419162538925	0.0139101083141072	0.975801463055445	0.994547767716175
Merged-chr12-81862489-2	chr12	81861989	81862989	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	intron (NM_018814, intron 1 of 35)	2459.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	2.38653139351946	2.56902450611412	2.63353301866165	2.39909960249529	2.14260014880884	2.52270239358435	-1.08765309717267	0.2233338601805	1
Merged-chr17-35240138-2	chr17	35239638	35240638	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1608.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	5.52154076053684	4.98332733123453	5.07929641859215	5.28557785327873	5.4253761018784	5.40644230798092	0.297330103091225	0.431993625404773	0.797172952089782
Merged-chr10-121484340-3	chr10	121483833	121484833	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8083.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.71232912279705	4.34920608979357	4.58639986676156	4.02507634600996	3.96399932876823	4.4120699050583	-1.1226696905415	0.0207866559126967	0.165624443664049
Merged-chr7-18958119-4	chr7	18957607	18958607	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29417.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	4.32235833127811	3.96248414589804	3.99119185646415	3.97571143852966	3.78566666052942	4.15495932445373	-0.397977548007898	0.443169073442458	0.803662801744639
Merged-chr15-79348288-4	chr15	79347780	79348780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304832)	promoter-TSS (NM_001304832)	-122.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	7.07173240978281	6.22476847318906	5.81088796585332	6.84410275833969	6.33483256893132	6.20971542677756	0.0182755825562007	0.978448136858852	0.995146803081243
Merged-chr10-120164332-2	chr10	120163832	120164832	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37265.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	5.30760472640604	5.64318966408813	5.40847856618865	6.11221942498853	6.08336984528162	6.09519846682787	1.13172861955974	0.000374730791576662	0.00835941010871607
Merged-chr7-97027058-4	chr7	97026558	97027558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-54693.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.39528797089081	6.17919203126379	6.32413529034675	6.09906314216627	6.3543635033251	6.13799791345935	-0.151683728980662	0.596653686509172	0.880020560968805
Merged-chr7-99434975-4	chr7	99434450	99435450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-31054.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	4.98159341880167	4.9306360219699	4.78273344571256	4.62539489759587	4.72346400289122	4.6036883790747	-0.57156346832815	0.150734634568913	0.517737097158098
Merged-chr10-14133103-4	chr10	14132615	14133615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 5 of 9)	intron (NM_001358782, intron 5 of 9)	166736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.7371153865956	5.91348772249307	6.0144097946149	5.54315408948699	5.9914379242179	6.00928942952146	-0.0391535686133785	0.904988279242003	0.978186201733838
Merged-chr8-72723894-3	chr8	72723400	72724400	+	907.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113248, intron 1 of 6)	CpG	630.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	5.99526651370962	6.59424720431983	5.99924303060103	6.28405475998027	6.15366049681518	5.74406498086032	-0.252021440420516	0.471933755362037	0.820410145940699
Merged-chr5-135551787-4	chr5	135551309	135552309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6687.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.68287875631735	4.21773030426242	4.54517622697017	4.54919780761665	4.30764402476407	4.44449549548506	-0.154066655567323	0.737035191036131	0.933485915273672
Merged-chr11-113444458-1	chr11	113443958	113444958	+	618.333313	f0_balb.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	121357.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	2.89670288459406	2.9413728676188	3.07839779322392	2.45686206340864	2.34759901273438	2.54371405601666	-3.81039454367398	0.000223108354551486	0.00546815904728132
Merged-chr17-84959593-2	chr17	84959093	84960093	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011151, intron 1 of 5)	intron (NM_011151, intron 1 of 5)	1592.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	2.80474953570702	2.93132188418204	3.17325289101861	2.72082413690993	2.64953880229904	2.72212436739807	-1.44435210588972	0.0542474981042155	0.299079907288926
Merged-chr19-37439457-3	chr19	37438962	37439962	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 3 of 3)	intron (NM_008245, intron 3 of 3)	4621.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	5.16808918793308	5.14381472974898	5.11212122489228	4.27991613239384	4.13120913479925	4.4114789164373	-2.13600435964467	4.63243830617494e-07	2.74414160058404e-05
Merged-chr10-77565970-4	chr10	77565469	77566469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008404)	TTS (NM_008404)	-15686.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	5.59254767986902	5.72867846330802	5.61745264912053	5.78185103448337	6.08527534336709	5.73526147336327	0.43145332316413	0.177480197124038	0.558475673800134
Merged-chr17-34203166-2	chr17	34202666	34203666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	2.20567746092841	2.14145376617292	2.33557065610335	2.43340374225563	2.2977817305663	2.47427092338873	1.19443092227139	0.164689261865654	1
Merged-chr11-120350348-4	chr11	120349845	120350845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038126, intron 1 of 1)	CpG	1667.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	8.19641136408336	8.34425538242089	8.198198123641	8.18748277467396	8.26493553313534	7.95230614356494	-0.143336373929812	0.512410880405827	0.841923394352673
Merged-chr19-40831296-4	chr19	40830824	40831824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172839)	promoter-TSS (NM_172839)	45.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	6.29437286598134	6.25800863013204	5.81027167963395	6.2379330574066	5.74526597079452	5.58222655709965	-0.439651942218953	0.213662199613492	0.606798656881475
Merged-chr16-91691696-2	chr16	91691196	91692196	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 10 of 11)	B1_Mus1|SINE|Alu	2798.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	2.48496626822628	2.47670874530455	2.59954597169258	2.42719173207917	2.31021963884304	2.5493928212129	-0.569070302520372	0.481233543563804	1
Merged-chr13-33931799-4	chr13	33931328	33932328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-4204.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	5.79428076936266	6.30777155550506	6.09325546444506	6.1692913468557	6.5489142567904	6.19746366073057	0.403825304722915	0.207900202760986	0.598730771894965
Merged-chr7-43579530-4	chr7	43578990	43579990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172482)	promoter-TSS (NM_172482)	-96.0	NM_172482	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	7.04598924052727	6.91871928007852	6.68388789675774	7.12821039278507	7.35509359920787	7.14976125502178	0.483843416669638	0.0589320357322662	0.314201316162123
Merged-chr19-55794792-2	chr19	55794292	55795292	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	52982.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.13357731683096	3.27979797923046	3.31133921975877	3.15513863670725	3.23084407067385	3.48573467428009	0.206883155150359	0.743079015401568	0.935473465671135
Merged-chr16-22444551-3	chr16	22444058	22445058	+	959.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4988.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	7.09521764163228	6.76682590127927	6.90505574596218	7.27522755148951	7.33498360039483	7.13898725348002	0.493053555741818	0.048951321186944	0.281100174832521
Merged-chr11-100702679-4	chr11	100702116	100703116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 4 of 12)	B2_Mm2|SINE|B2	1655.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	7.73021217085912	7.68845556891308	7.47604942378873	7.61484557214149	8.07959244212547	7.38991445946708	0.143908301286367	0.599025472479095	0.880902871165758
Merged-chr8-3481846-4	chr8	3481319	3482319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 4 of 8)	RLTR12A|LTR|ERVK	10957.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	3.28426581577777	3.46337521177704	3.56260080586481	3.48637853935606	3.22113498420712	3.30515814666484	-0.374255725289662	0.541208271059731	0.856765739682368
Merged-chr6-50978753-4	chr6	50978255	50979255	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	202640.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	3.45534742471658	3.33912622552782	3.52016606050963	3.50633108875071	3.21778904933885	3.74008997968162	0.219312210904434	0.722125307155252	0.928715455235754
Merged-chr2-156257337-4	chr2	156256845	156257845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-55128.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.65648840799364	6.63038081611984	6.47977812740448	6.4722932211616	6.61753705205365	6.07564037506325	-0.275209223881592	0.347155624308187	0.735296555617554
Merged-chr1-64118927-4	chr1	64118433	64119433	+	973.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	2456.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.84389665035083	6.87470156203393	7.15649003605844	6.82745606490712	6.85850137450996	6.83327728060014	-0.180179116265371	0.477167430179074	0.823186444058601
Merged-chr12-85397323-4	chr12	85396844	85397844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22627.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.07900465801389	7.39068823908009	7.04439199788669	6.30445286600701	6.3552648042521	6.50837889618841	-1.25053134966195	2.5527958851878e-06	0.000123639720613915
Merged-chr7-27197950-2	chr7	27197450	27198450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	intron (NM_001290513, intron 2 of 7)	-1679.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	6.60631947392733	6.74686421537012	7.15491024977585	6.96260067659953	7.03517293581248	7.23518031408751	0.355153778211341	0.201796710010332	0.591440895419483
Merged-chr10-8416291-3	chr10	8415805	8416805	+	861.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	102520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.28776642343067	3.30683974691662	3.25776243780331	3.15885744199254	3.27767123136106	3.32907520483338	-0.120903757813945	0.844014791877707	0.963711687630021
Merged-chr14-57744719-2	chr14	57744219	57745219	+	807.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	intron (NM_015771, intron 1 of 7)	1404.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	4.4551218777735	4.40764065224691	4.55662382367869	4.5971323175314	4.67300092562006	4.54040730542614	0.347335078547659	0.407285156706045	0.781419523604339
Merged-chr13-9388101-4	chr13	9387501	9388501	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	111476.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.04721741902461	4.91302890903098	4.70651070054307	4.72038467888454	4.7455015300148	4.92637765069809	-0.249883262334921	0.530046428258047	0.851070276054813
Merged-chr13-103807558-3	chr13	103807033	103808033	+	787.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-32925.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	3.05088589503176	2.88421929280285	3.14453026221805	2.98664983797308	3.02934069520493	2.85751489822949	-0.289785314180666	0.674684212497453	0.911852710156386
Merged-chr7-125478729-2	chr7	125478197	125479197	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	12845.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.06045581826339	3.05589240148351	3.08223977585576	3.88722631461892	3.69515482207417	3.47077970399817	2.63294165090756	8.51587492401699e-05	0.0024801852316332
Merged-chr8-41245298-4	chr8	41244803	41245803	+	922.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	RMER6B|LTR|ERVK	5544.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	4.09992936451216	4.21122613705337	4.12495187809808	4.78382746079337	4.43412861676758	4.5974664569884	1.19979157757705	0.00862823603655071	0.0909358155958596
Merged-chr19-34194637-4	chr19	34194163	34195163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	1729.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.74118406038153	5.66727783855515	5.71783846049793	6.22856044478717	6.40317962168137	6.03212780268204	0.926938025655695	0.00208989865769023	0.0319544199295978
Merged-chr17-81578945-2	chr17	81578445	81579445	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	159442.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.53905247767245	3.68022697834932	3.68032421653378	3.52615050973547	3.4036124812531	3.428186297034	-0.661043683143522	0.24677878729833	0.643905401691724
Merged-chr5-72551410-4	chr5	72550907	72551907	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	8238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	5.7314730302965	5.63447370457925	5.95526450155279	5.98728443317768	5.94868160483835	6.03819754849161	0.389250419323138	0.201481999868651	0.591011009643598
Merged-chr3-8729075-4	chr3	8728524	8729524	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61986.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	2.67379629702063	2.69042842733788	2.50227632516801	2.72622020516409	2.46042597442863	2.94910988365151	0.515771432546838	0.524099501251399	0.848572432574534
Merged-chr8-68954068-4	chr8	68953569	68954569	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73514.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	5.47311699950624	5.26060043423231	5.52981956955371	6.07905852243053	6.17835567825093	5.67980740179276	1.07388731990737	0.00133729849434698	0.0226212508879087
Merged-chr2-60866537-2	chr2	60866037	60867037	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	14901.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.48842982609222	4.53107018861101	4.70999208854457	4.57827533483903	4.6144092233618	4.66042906619502	0.107725117116941	0.794887698387085	0.950940666630677
Merged-chr12-80261412-2	chr12	80260912	80261912	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.70352631282101	4.70315798396949	4.73865862885584	4.63263594954471	4.65308264743345	4.42725999551545	-0.309969400505641	0.452267099676954	0.809347717700497
Merged-chr10-62579002-2	chr10	62578502	62579502	+	620.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-545.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	3.48683203044647	3.3736996736002	3.44020468805303	3.27195442659619	3.25413694418095	3.34540491932764	-0.579345312066129	0.333017647042613	0.723935027979521
Merged-chr19-26506994-4	chr19	26506506	26507506	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-98154.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	3.21853338969129	2.91242571559318	2.97506812625849	2.89641467146748	2.73958610944471	3.21961646560049	-0.376656304948552	0.606492417246476	0.884136163326996
Merged-chr2-22773678-4	chr2	22773156	22774156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	-671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	7.30557103690024	7.16309775584823	6.69777039422234	7.0298788555777	7.33317057141171	7.23887021589489	0.174784710029177	0.531752728786956	0.851792887243639
Merged-chr16-93834233-2	chr16	93833733	93834733	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	2112.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	4.96912631565185	4.8194761639146	4.69196306743907	5.37052818137702	4.76851538476257	4.71760871975629	0.338817847207485	0.436343712880691	0.799472869647494
Merged-chr17-34259155-3	chr17	34258568	34259568	+	940.93335	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4159.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	3.92203755164761	3.8528465334472	3.84169619213355	4.25897020556141	4.4852315522087	4.39129969768483	1.45959111266324	0.00260974172549931	0.0378774445308472
Merged-chr12-98777629-3	chr12	98777139	98778139	+	770.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 10 of 14)	L2|LINE|L2	6617.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.56295768402614	3.42277100448601	3.71605063892791	3.3906196761317	3.2784328505454	3.42708983617264	-0.78175246329623	0.188231863129537	0.573672143699454
Merged-chr14-51166290-4	chr14	51165792	51166792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4032.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	4.71048358620347	5.0939584147044	4.95289875798539	4.99346063749209	4.93346269115086	5.69667259983596	0.657785884457666	0.13300002488516	0.487943629455745
Merged-chr13-119409310-8	chr13	119408749	119409749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008710)	promoter-TSS (NM_008710)	8.0	NM_001308506	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	5.66289794587999	5.83692445994612	5.77264513484585	5.84026522516883	5.84985613177437	5.52799439802349	-0.00101486008683573	0.997459521268608	0.999489539201078
Merged-chr2-164787206-4	chr2	164786706	164787706	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133924, intron 2 of 2)	MIR|SINE|MIR	1185.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	4.9132501735168	4.56392716856657	4.80916183437414	4.82575804849624	4.62903130366338	4.79953702481234	-0.0449175056712173	0.912912034642532	0.980493376461863
Merged-chr14-54776333-4	chr14	54775811	54776811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	5575.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.09436302441093	5.94844518867412	5.89111293834779	6.18060166229946	6.01543647304517	5.85127755178021	0.0744064853858892	0.804743765717083	0.953651704501661
Merged-chr10-80073873-3	chr10	80073389	80074389	+	917.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1550.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	5.93378907121557	5.6930466714649	5.58213441186362	5.86778148491615	5.82530923820275	5.55627525852555	0.0232068504939979	0.943375225182212	0.987377570608805
Merged-chr1-165613901-2	chr1	165613401	165614401	+	618.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	20640.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.11456282520163	3.92808887005094	4.11724968272457	3.85378200648638	4.00881996499531	4.04607675076014	-0.24240826626684	0.625317874605306	0.89246806537449
Merged-chr11-116198337-1	chr11	116197837	116198837	+	663.5	f0_balb.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	-518.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	7.87035167163629	8.00497614977332	7.66425378039671	7.65971581996175	7.7606806375281	7.44895164012356	-0.321252308657642	0.176575011116486	0.556963220799667
Merged-chr10-40129384-3	chr10	40128897	40129897	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12857.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.46270474781333	6.71479906359801	6.93491987874746	6.72268000757646	6.78806614363594	7.14153666097037	0.279194160631689	0.329015109271555	0.721105303873632
Merged-chr2-72842037-4	chr2	72841524	72842524	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28307.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	3.38401695041701	3.64743023983878	3.42511007151132	4.12643360503967	3.97292768821934	3.78755558181117	1.59333800948862	0.00576056054339866	0.0676941573824748
Merged-chr15-79356490-2	chr15	79355990	79356990	+	947.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	RSINE1|SINE|B4	8088.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	3.4151076145838	3.2768385551294	3.08912846688307	3.54095535058345	3.54308117694917	3.3512620671242	0.812428394132639	0.199108638209395	0.587491363597214
Merged-chr12-55488897-4	chr12	55488391	55489391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010907)	TTS (NM_010907)	3756.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	7.85788550782062	8.04453474078361	7.77393273222824	7.78179630811747	8.23389213929757	7.93705639816479	0.146734038918443	0.545389708183296	0.858086957578862
Merged-chr17-10326193-2	chr17	10325693	10326693	+	598.474976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	1591.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.41453817072365	4.78991210649395	4.67553609138326	4.33373883569681	4.58408705971329	4.45480309705949	-0.41462332636676	0.348314854599116	0.73619646467901
Merged-chr2-153136977-2	chr2	153136477	153137477	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 9 of 12)	intron (NM_001172117, intron 9 of 12)	-24324.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	2.77857483866925	2.83425513291424	3.01236814561644	2.90785607277914	2.62595120193105	3.19397549453671	0.234498364893221	0.75577644981841	0.939419158965935
Merged-chr18-69576517-4	chr18	69576012	69577012	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	230352.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.91530091575922	6.91167433962758	6.78372080368442	6.71646609145842	6.77778748489496	6.71666056862045	-0.212695344497658	0.389760545935337	0.769299073766969
Merged-chr9-47628757-4	chr9	47628255	47629255	+	859.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	98403.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.80239944681314	6.87426867054003	6.71497498734056	6.92289213185951	7.27056175108394	6.62005238150836	0.274259519867969	0.336983531779999	0.726949528325002
Merged-chr2-181219955-6	chr2	181219373	181220373	+	874.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199312)	promoter-TSS (NM_199312)	-143.0	NM_199312	332713.0	Mm.23349	NM_199312	ENSMUSG00000047841	Fndc11	1700026M20Rik	fibronectin type III domain containing 11	protein-coding	2.51448109191199	2.47656506935011	2.83982780448518	2.54196168342665	2.40173519425319	2.55315934266241	-0.679184185813953	0.399280251360482	1
Merged-chr12-79171746-4	chr12	79171257	79172257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	701.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	7.24564347079236	7.36006648770881	7.07869810159055	6.61744795313375	6.68391131633833	6.66690882746221	-0.893664517795897	0.000316932859833863	0.00728782732797213
Merged-chr1-155065450-4	chr1	155064923	155065923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 4 of 6)	L2b|LINE|L2	17841.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.25094476224979	5.61565372750497	5.56014054369129	5.84555192257066	5.88405919421232	5.39957413414523	-0.217797900094989	0.568158350455499	0.868528648409077
Merged-chr19-44281926-2	chr19	44281426	44282426	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11750.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.28212433662161	3.6586716410166	3.70621982161893	4.11095213604986	3.55671590744628	3.83385240783356	-0.201415357882936	0.739729898172789	0.934245371298156
Merged-chr8-104393814-1	chr8	104393314	104394314	+	547.0	f0_balb.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	1993.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	3.00586021172221	2.98454709119185	2.86194837971715	2.95728282913337	2.97349705620591	3.28306543695361	0.53789660835027	0.436176283778595	0.799465960760608
Merged-chr12-103036845-3	chr12	103036346	103037346	+	796.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081017, intron 7 of 48)	L1MEc|LINE|L1	87987.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	2.94394662448454	3.04726677367358	2.95046560264556	2.67025258394584	2.83451867075994	2.90297837714308	-0.883783568957042	0.21764883317385	0.611645289860174
Merged-chr5-114826404-4	chr5	114825898	114826898	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2930.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	2.6723023910178	2.53319762909228	2.82007357884364	2.76711576545462	2.55088356449557	2.64797674134397	-0.10430334967388	0.891581066756456	1
Merged-chr8-24436370-2	chr8	24435870	24436870	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	2576.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	2.43992590722197	2.68456950863829	2.58796971748373	2.41670268048573	2.23708695509353	2.40491114847819	-1.451768364374	0.088945398112242	1
Merged-chr7-4225354-4	chr7	4224852	4225852	+	751.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-12402.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	2.83656516088357	2.76263501405815	2.81373542377971	2.97495740826806	2.84536297272006	3.00662614714074	0.68047700543824	0.330530442932206	0.721952410959523
Merged-chr7-98311582-3	chr7	98311102	98312102	+	668.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	B4|SINE|B4	-2060.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	5.03289375529322	5.09411185798644	5.03237556142416	4.96755687848256	4.78887739201838	5.1628168162739	-0.184668930304239	0.626621026250625	0.892916235446326
Merged-chr19-3084238-2	chr19	3083738	3084738	+	925.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	113465.0	NR_045304	70011.0	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	5.09269810851527	5.61119648612036	4.85904826925627	5.2718333806035	5.10894353303525	4.66228742647237	-0.39196952045662	0.382296407775608	0.763903231068644
Merged-chr9-108306174-4	chr9	108305672	108306672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	12.0	NM_016802	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	8.03336274060123	8.06868853270388	7.83391732071107	7.88571034873905	7.870027034697	7.80600145002589	-0.188114086946802	0.384437776957628	0.765526696623039
Merged-chr6-125573396-4	chr6	125572890	125573890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	20442.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	7.67837001004951	8.05435358962011	7.55113341140039	7.82395728555153	8.23314781404744	7.80448664806135	0.270682701293113	0.308510240516176	0.704565421726157
Merged-chr8-73244326-2	chr8	73243826	73244826	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	109214.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.07545323018783	3.53063103186759	3.40509801915607	3.28692668370567	3.38122477524416	3.63122796235933	0.318688732888035	0.621513946123286	0.890776705750075
Merged-chr18-80689131-2	chr18	80688631	80689631	+	792.883301	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	19042.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.69360744107696	4.73803436922486	4.61213752551703	4.56728196612431	4.58809423091038	4.55352262600758	-0.276473185307132	0.498196903341479	0.833856267944725
Merged-chr14-50834675-3	chr14	50834166	50835166	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 41 of 54)	RLTR12B|LTR|ERVK	26750.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	7.01537922603557	6.99830246602592	7.0401976504869	7.35403968698734	7.28390367216243	7.21118890125102	0.406912435296248	0.0800856206975348	0.374347751643193
Merged-chr6-38353431-2	chr6	38352931	38353931	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	1172.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	7.66842241418615	7.9989939204874	7.41780885895031	7.98635005916697	8.21892335835147	7.58249874667873	0.340969824998647	0.228490737481453	0.623659415593137
Merged-chr15-25891755-4	chr15	25891266	25892266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	ID_B1|SINE|B4	-41786.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	5.42891049944843	5.33689168360936	5.27065215405034	5.25411479200072	5.3014330575443	4.98094657567577	-0.305270646290926	0.392683524358768	0.771241341992266
Merged-chr4-110351716-4	chr4	110351205	110352205	+	899.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163397, intron 1 of 5)	CpG	206.0	NM_001163397	15572.0	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV like RNA binding protein 4	protein-coding	2.22073470665648	2.15088166141613	2.32258509365826	2.15651284959486	1.95101223260803	2.13562686565262	-1.13842991528072	0.220107777220971	1
Merged-chr11-68865969-4	chr11	68865473	68866473	+	898.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	6.86453407624721	6.43959721564619	6.47582184923111	6.66248616809223	6.7720235017219	6.72335359880936	0.168418883838553	0.544068102979689	0.857551302506722
Merged-chr11-54522055-2	chr11	54521555	54522555	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-790.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	7.39057888002513	7.95515378225164	7.35499357099026	7.51636895928548	8.01968646062954	7.33040439987401	0.0884059837535545	0.773617627822367	0.944149599962504
Merged-chr2-32077202-2	chr2	32076702	32077702	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	6503.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	2.46743883354301	2.42981927391816	2.62006265318129	2.44449404293234	2.323855007191	2.69309509568565	-0.0881511505352418	0.914070545250347	1
Merged-chr12-85123250-4	chr12	85122747	85123747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 9 of 14)	intron (NM_030225, intron 9 of 14)	12414.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	7.42534831023412	7.33795274263181	6.94336056428917	6.90273241083925	6.83180054079334	6.7726704830043	-0.642459397381221	0.0141845053647429	0.127969676069557
Merged-chr14-30695786-4	chr14	30695296	30696296	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19053.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	5.20948885166492	4.95224587542613	4.44843600816334	4.5301290218506	4.49712826813246	4.65251797319197	-0.835885053210665	0.0636989541379755	0.328860272341698
Merged-chr10-128058473-2	chr10	128057973	128058973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-509.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	7.59083873956271	7.50041378275558	7.22565579502643	7.32480109845424	7.56348408738604	7.33051888877744	-0.0570134311231846	0.816793641748906	0.956754861188725
Merged-chr17-33900978-3	chr17	33900547	33901547	+	762.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4088.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	3.86110621508691	3.86181318671903	4.0227639551892	3.88060873285177	3.98251258448544	4.04414108770234	0.176009427631753	0.725233071421858	0.929602807794907
Merged-chr5-65959726-2	chr5	65959226	65960226	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-7398.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	3.75913550516932	3.56473288064496	3.83642094472802	3.78337393167714	3.75027251567841	3.80629952208675	0.19576459380158	0.714425174098806	0.925889500292054
Merged-chr19-46482344-2	chr19	46481842	46482842	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-19306.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.16469467518349	4.20579176719469	4.37061079388391	4.18208441308242	4.12113879425578	4.12614307255827	-0.279137569873597	0.548798513568202	0.860028357389381
Merged-chr5-113830463-4	chr5	113829965	113830965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009151)	promoter-TSS (NM_009151)	36.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	6.67660747389372	6.75019113802405	6.59161295828428	6.90401736612188	7.19149325918975	6.48444349331962	0.356897517427508	0.22531636941676	0.620141719582883
Merged-chr9-45464399-4	chr9	45463893	45464893	+	957.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-33161.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	5.07776482957694	4.72413197527939	4.97947786790258	6.30087925827711	6.45563749609023	5.87397907701063	2.47028471680439	1.08348111737876e-11	1.73373647720869e-09
Merged-chr3-59214268-2	chr3	59213768	59214768	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	B4|SINE|B4	-3386.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.89117369864223	4.91827983962203	5.08707507087395	5.02620091388736	4.91350888832395	5.11793502856895	0.115640850933269	0.757792862871678	0.939957028913442
Merged-chr12-25101231-4	chr12	25100734	25101734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5142.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	7.47638366869426	7.6937214397636	7.48639430009103	7.38770645980208	7.54412803304885	7.48219359972992	-0.124235254278153	0.588766511873967	0.876650937479947
Merged-chr6-86470765-2	chr6	86470265	86471265	+	870.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146170)	TTS (NM_146170)	10065.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	4.78867190779899	4.84709796026703	4.6248041576189	4.49121639337915	4.55532516247597	4.56625715126257	-0.539298913334926	0.189047437887685	0.574645479326324
Merged-chr7-44970321-4	chr7	44969803	44970803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357670, intron 6 of 18)	intron (NM_001357670, intron 6 of 18)	4548.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	4.61786004684389	4.34082588410638	4.29384388692996	3.98135045950483	4.05126573526309	4.31729218123818	-0.854936576512159	0.0743048352153218	0.358566185037203
Merged-chr18-12168638-4	chr18	12168136	12169136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-94.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	7.3375684077651	7.5024472649377	7.31009977526959	7.75306084894567	7.58566085005367	7.48728207886653	0.330546007523809	0.155804850421361	0.525824781742472
Merged-chr2-39203586-2	chr2	39203086	39204086	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024209, intron 4 of 6)	intron (NM_024209, intron 4 of 6)	-12856.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	2.12751990289338	2.09804466678426	2.33954330697069	2.01150568955729	2.18233112375617	2.28772579492028	-0.179164808123181	0.843611398628626	1
Merged-chr11-100725091-4	chr11	100724598	100725598	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	11248.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	6.90687953590153	6.79365415549791	6.65910459046244	7.09050227364881	7.05145466414743	6.8617639646304	0.328356251059059	0.194148272317484	0.581328465709111
Merged-chr4-58506153-4	chr4	58505644	58506644	+	845.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	PB1D11|SINE|Alu	-6741.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.935911989398	4.98237610495947	5.14558271196196	5.37274850167843	5.52234353051588	4.95703075080914	0.620599486473576	0.105469936400643	0.433465497778557
Merged-chr9-22129745-4	chr9	22129233	22130233	+	827.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102404, intron 2 of 4)	intron (NM_001102404, intron 2 of 4)	865.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	5.1011436679681	5.38278605759198	5.48326199116343	5.48853543156988	5.48055285173112	5.36918207901873	0.246264946477484	0.479055105036465	0.823998431318037
Merged-chr2-174344312-4	chr2	174343841	174344841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14252.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	7.18102271637276	7.38845303854199	6.86825579775493	6.82390261027587	7.37993486443862	6.99984910537274	-0.110121368172268	0.705967030934378	0.922834459892351
Merged-chr4-53410902-4	chr4	53410403	53411403	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29510.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.67264628675774	3.82091365218329	3.44477043089499	3.68436770151674	3.6521270339286	3.68675089566622	0.031287760544106	0.955787703466601	0.989783387008628
Merged-chr2-120544945-4	chr2	120544470	120545470	+	917.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 3 of 21)	Lx7|LINE|L1	18889.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	4.08029891961505	3.67094715366596	3.77060370107974	3.8298452194757	3.86411307886971	3.98992225657366	0.112022726642677	0.834609034394485	0.961352038177916
Merged-chr8-106936817-3	chr8	106936258	106937258	+	820.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	1008.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	5.25088346683284	5.21955354894157	5.17133686600718	4.91981630930798	4.2977366161406	4.96607726163856	-1.01201887465238	0.0192705690223463	0.157566046328297
Merged-chr11-22815417-4	chr11	22814918	22815918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	44317.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.79378585990392	6.10272829857513	6.0683459789079	6.0373114401372	6.12900948998199	6.06288810052303	0.148633811961528	0.617551170683297	0.888810836054056
Merged-chr7-118703233-4	chr7	118702720	118703720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	2518.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	7.56424987954414	7.8108487914287	7.26331689730632	7.4445656455122	8.00771120402336	7.30862613829633	0.0915423733492177	0.759176103826319	0.940311236380535
Merged-chr19-9916966-2	chr19	9916466	9917466	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-17433.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	5.65109243885902	5.36165980104731	5.2849204830512	5.47412748521594	5.6199996552287	5.41372688847522	0.118667636286551	0.730860835381868	0.931175666746392
Merged-chr2-27009998-4	chr2	27009519	27010519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029862)	promoter-TSS (NM_029862)	93.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	6.6396615652327	6.56819037338502	6.55334527474529	6.3798820190496	6.30255952814499	6.31678958455667	-0.415634138648185	0.113178674189887	0.44938889230771
Merged-chr3-85574650-4	chr3	85574136	85575136	+	833.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 1 of 12)	intron (NM_144896, intron 1 of 12)	507.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	7.61133392679669	8.22073729489805	7.84950403818637	7.8679267618248	7.97990583234462	7.80598354144268	-0.0489092824552741	0.848691636000202	0.964356989789491
Merged-chr14-77795439-4	chr14	77794934	77795934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033440, intron 2 of 2)	intron (NM_001033440, intron 2 of 2)	3534.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	6.10267656842389	6.14750003589965	6.24247261146599	6.53809980097959	6.77152158293347	6.47636211419684	0.735916650335024	0.00760168634632964	0.0829535891810356
Merged-chr12-112999922-2	chr12	112999422	113000422	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028193, intron 1 of 17)	CpG	699.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	5.91138939760249	5.95755825172259	5.99455291111541	5.996584189371	5.63564294751999	5.73701161860189	-0.277546867913634	0.371445281674376	0.755590455851299
Merged-chr6-6248626-3	chr6	6248117	6249117	+	985.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136906)	promoter-TSS (NR_136906)	-42.0	NR_136906	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	2.45823361968707	2.64309621869589	2.68283806604314	2.45980663604977	2.5602381843758	2.63351856393959	-0.256670309826839	0.742712701560009	1
Merged-chr11-82719542-2	chr11	82719042	82720042	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 13 of 13)	intron (NM_009839, intron 13 of 13)	44779.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	2.81477526633051	2.53632004352363	2.81161286284166	2.52249999752244	2.58957191073633	3.05338791246588	0.0697746074630058	0.931173797647028	0.98479720232824
Merged-chr12-102434118-2	chr12	102433618	102434618	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	5695.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.86283313278693	6.28117643242705	6.20860177796866	6.53024586660451	6.28159050766357	6.07236860745856	0.309329902382537	0.322319922567087	0.715788175327325
Merged-chr10-41809642-4	chr10	41809147	41810147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	16.0	NM_001243075	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	6.97280759985553	7.25028516785501	7.25234587567776	6.90711949173361	7.05784421534416	7.00177482010133	-0.257904295561503	0.299343534971743	0.696117404710008
Merged-chr12-84316940-5	chr12	84316457	84317457	+	889.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045546)	promoter-TSS (NR_045546)	98.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	6.0022128913785	6.4817429964114	6.57018421852336	6.38988369712086	6.22684119558788	6.16284110376226	-0.171726879889916	0.579188495898729	0.872437416842052
Merged-chr2-35450413-1	chr2	35449913	35450913	+	568.0	f0_c57.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11036.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.05341663512523	5.09278525430922	4.72524988991462	4.5569565441293	4.58216587894646	4.83014523603568	-0.749442094798659	0.0674115682455667	0.339619184277864
Merged-chr11-98362341-2	chr11	98361841	98362841	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3973.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	4.79756539219937	4.97954477020683	5.01633244293286	4.7035469265152	4.48170368548307	4.90980016691341	-0.536191648576338	0.191405090816492	0.57804898292515
Merged-chr7-140955500-4	chr7	140954967	140955967	+	968.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030694, intron 1 of 1)	intron (NM_030694, intron 1 of 1)	494.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	7.36867883269149	7.2322988044847	7.65326054539256	7.49237461747754	7.67058168289968	7.81010115272768	0.349200177784379	0.160677908600252	0.533400273274054
Merged-chr4-57954668-4	chr4	57954168	57955168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	1743.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	6.93170796540384	6.99662626023722	6.93800947058201	7.51026239268273	7.93125749782918	7.23710572562357	0.960598948682189	0.000480055137066438	0.0101847087825151
Merged-chr11-16508257-4	chr11	16507752	16508752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011343, exon 1 of 4)	5' UTR (NM_011343, exon 1 of 4)	232.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	8.45273886331031	8.64944517476935	8.21900398487806	8.43723447816449	8.46725549581724	8.22803098233077	-0.101145965116949	0.657928090740515	0.904859102731141
Merged-chr2-129373489-4	chr2	129372973	129373973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015474, intron 2 of 2)	intron (NR_015474, intron 2 of 2)	-2334.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.65913990470193	6.18638885335719	6.28562153808275	6.47695522026643	6.82509603678167	6.75075405057261	0.473068199236337	0.111635780384135	0.446313714155454
Merged-chr11-48853833-7	chr11	48853280	48854280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16309.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	6.42853256379379	6.22192199828618	6.20676752153727	6.18937393171087	6.14251981433676	6.02266502406351	-0.283994491541189	0.317727800419491	0.711518266188251
Merged-chr5-114806714-2	chr5	114806214	114807214	+	810.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026718)	TTS (NM_026718)	7262.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	5.8558266402343	5.81782757168764	5.81669600743459	5.77996898112711	5.82147824603008	5.63910046642605	-0.133646748177264	0.660903610377119	0.906196879899247
Merged-chr3-123508440-4	chr3	123507959	123508959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028574)	promoter-TSS (NR_028574)	-123.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	7.80686993495744	8.08165707471602	7.88338143111871	7.8776291541472	7.9009324670954	7.97804050898213	-0.0198715205515393	0.928064567684648	0.983802612059568
Merged-chr11-69914073-4	chr11	69913594	69914594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357906)	promoter-TSS (NM_001357906)	60.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	8.23017177281383	8.37110119317673	8.16849798005889	8.19143919439287	8.17891117779266	7.92327879281804	-0.21560232751467	0.324371924383787	0.717484690417516
Merged-chr18-67769843-4	chr18	67769337	67770337	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5039.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	4.23939109836352	4.31392263399334	4.50148558740911	5.01652134737872	5.27894601026579	5.03415987940937	1.8237912620622	1.03954417623065e-05	0.000414733694862936
Merged-chr6-83034666-2	chr6	83034159	83035159	+	744.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 1 of 13)	intron (NM_013586, intron 1 of 13)	435.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	4.5965218739013	4.65654960291762	4.32965659358499	4.17815099555187	4.57546116510528	4.39838505653067	-0.35341691684655	0.442729311124511	0.803309923833629
Merged-chr3-27185689-2	chr3	27185189	27186189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	2685.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.73876474144156	3.59575237035519	3.68865410538656	3.85624383196671	3.75514731171185	3.91020353704438	0.535138740596243	0.312995277440417	0.707613396148954
Merged-chr1-191850963-4	chr1	191850479	191851479	+	981.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	29506.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	5.30033456226108	5.31808766299922	5.28511786371517	5.3767715707744	5.51513246248589	5.28430257753975	0.201460964785426	0.553463020102496	0.862251545920931
Merged-chr7-35144550-2	chr7	35144071	35145071	+	662.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25278.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.4580761275893	3.31786234457942	3.4923880826575	3.47991393486329	3.36847430867107	3.45462378979057	0.0423032195288373	0.942423793523305	0.987202156853573
Merged-chr3-15179697-4	chr3	15179200	15180200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152602.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.93932484765928	6.28932813025779	5.91356913039657	5.70649673326699	5.8404386362496	5.66001128962087	-0.568042324266984	0.0733517025665887	0.355851683014939
Merged-chr1-171613617-1	chr1	171613117	171614117	+	615.0	f0_balb.idr	Intergenic	Intergenic	-6207.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	2.8930724820538	3.01700255433478	3.08303553682639	2.63253042287491	2.55303603474295	2.53685889211842	-2.4477632756288	0.00295372120984355	0.0416282578639332
Merged-chr17-35425260-3	chr17	35424735	35425735	+	972.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023124, exon 2 of 5)	exon (NM_023124, exon 2 of 5)	358.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	6.11284577951159	5.70697847137116	5.17496276187872	6.3678200825575	6.17043266628545	5.4319980166471	0.575838531697562	0.420616278936688	0.789800880993226
Merged-chr15-30468439-2	chr15	30467942	30468942	+	862.5	f0_balb.idr|f0_c57.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	295849.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	6.66351181563527	7.12035991279719	6.85860771410522	6.83594636172658	7.18355876822244	6.87271311872139	0.128865240872069	0.644726373229275	0.900287351502017
Merged-chr10-115362364-4	chr10	115361858	115362858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359470)	promoter-TSS (NM_001359470)	-91.0	NM_001359471	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	7.19318282848641	7.44751470216477	7.13103892379201	7.17387826032214	7.39738087105388	7.42937492292034	0.0993446622925771	0.688214359938571	0.917193226920892
Merged-chr8-120716213-4	chr8	120715713	120716713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20145.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.61322710616617	7.53460077785778	7.05755394866282	7.46271139537837	7.66166043577749	7.22195622491922	0.0515452924154824	0.8513344099472	0.965211450762173
Merged-chr8-123855264-4	chr8	123854755	123855755	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028536, intron 2 of 3)	HAL1|LINE|L1	4954.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	5.68726565977714	6.14801216766337	5.95534850426457	5.48595083768836	5.76081937942746	5.97107768041171	-0.351188418869124	0.300786479893926	0.697542960396147
Merged-chr7-142284812-4	chr7	142284314	142285314	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-10451.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	4.554784572628	4.84053872768252	4.79914398486429	4.59906864973643	4.46318873912579	4.82776817807661	-0.257104644145951	0.544021235368114	0.857551302506722
Merged-chr10-127578243-4	chr10	127577772	127578772	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 21 of 88)	intron (NM_008512, intron 21 of 88)	42876.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.18498737075727	3.92680300916193	4.23856191060621	4.03479222969238	4.04064872992398	4.30533239379388	0.0197168762374266	0.968045726728632	0.99266738336646
Merged-chr3-9037933-1	chr3	9037433	9038433	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-24031.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	3.16427979174397	3.27975219076713	3.40602385438329	3.57713042850538	3.5933695753683	3.73706467412689	1.34399867189844	0.0243243267381805	0.18363079107517
Merged-chr9-32501043-4	chr9	32500529	32501529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	40423.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.7037317653776	6.95054721422028	6.4617121630873	6.49997802797722	6.20920261767694	6.36756829354512	-0.593690604970687	0.039654765719693	0.247565567815587
Merged-chr9-106322700-4	chr9	106322276	106323276	+	806.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	41715.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.50452309686942	4.39423713737756	4.85231511663306	4.54705582233879	4.24862982246468	5.01251403981932	0.0962028557812498	0.843647585936205	0.963587687251108
Merged-chr8-46893142-4	chr8	46892666	46893666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-93721.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.64532962651012	7.61000281353558	7.52828944762889	7.48038896096433	7.69958675046906	7.50460810442582	-0.0397755943981546	0.860431705180672	0.967497315198289
Merged-chr7-43665127-4	chr7	43664622	43665622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4961.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	6.79617777192721	6.62605979429204	6.46285788702266	6.93731630003467	7.15282147360005	6.90427901157982	0.566294495598639	0.0319873881029834	0.217061375735854
Merged-chr12-40472807-2	chr12	40472307	40473307	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1B2|LTR|ERVL-MaLR	26754.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.23452860723945	3.97645767824763	4.0601499638073	4.15440220004616	4.34616336318253	4.44154403637402	0.605014917226574	0.204901536063376	0.595580073300188
Merged-chr13-119488981-2	chr13	119488481	119489481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	121.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	4.89369613732009	5.14485822653775	4.73715642895431	4.89212644580116	4.77815138281819	5.34435180809983	0.154083984986149	0.714762611232323	0.926044950792719
Merged-chr5-140331892-4	chr5	140331390	140332390	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	8.0	NM_026510	68017.0	Mm.38894	NM_026510	ENSMUSG00000029557	Mrm2	2310037B18Rik|Ftsj2	mitochondrial rRNA methyltransferase 2	protein-coding	5.03449118716057	5.05306358631258	5.25521303734553	4.97988478008915	5.25162756752263	5.48921233176899	0.285312341775971	0.448946208856972	0.807468537975475
Merged-chr19-29370730-3	chr19	29370234	29371234	+	773.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	B2_Mm2|SINE|B2	3296.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	5.27625040566324	5.42525362890193	5.64449739609516	5.84948738994783	6.0755775215859	5.93007944165844	0.941606142510214	0.00357865465817959	0.0479793916625613
Merged-chr5-64209411-2	chr5	64208911	64209911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20946.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.40394288098839	4.49278143220944	4.81324285520481	4.23302332916127	4.19160298805469	4.14863102687586	-0.988625404768045	0.0325518195891716	0.219478206933446
Merged-chr7-141578606-3	chr7	141578134	141579134	+	599.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	ORR1B1|LTR|ERVL-MaLR	16454.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	4.92363549423436	4.76140069201441	4.51951134270406	4.82139836025565	4.8844924177854	4.58840148728791	0.0558838815203164	0.8940560776433	0.975337673545585
Merged-chr14-75789579-2	chr14	75789079	75790079	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2542.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	3.12416939785633	3.12003406823748	3.13798361390465	3.07465754366136	2.87559420747959	2.97167721606466	-0.704556830857454	0.291744912658351	0.689233999388888
Merged-chr2-27714375-4	chr2	27713889	27714889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	3806.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.80732460939248	8.03581907150463	8.02707791333494	7.60786760720874	7.89621838430898	7.82448796544723	-0.251381898192301	0.272197502834184	0.66953956602346
Merged-chr3-136700834-4	chr3	136700343	136701343	+	911.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	30777.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	5.53778924612162	5.77784177844299	5.38751225064408	5.24170635567288	5.21078792729824	5.03822487478746	-0.810696023472507	0.0223011495665581	0.173521044804018
Merged-chr12-110465090-3	chr12	110464599	110465599	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	17920.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.52508340155876	4.69443675003003	4.35515557329848	4.26317021202196	4.53124814261503	4.18219802547314	-0.487743537277431	0.293716421403	0.690424156263798
Merged-chr13-33953685-1	chr13	33953185	33954185	+	631.0	f1_c57bl6.idr	intron (NR_040707, intron 2 of 4)	intron (NR_040707, intron 2 of 4)	-10974.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	3.54950789495173	3.73374647461784	3.97927057437602	3.86461543572691	3.9199775371576	3.85607043593553	0.401480732971592	0.455995448483666	0.811256559277932
Merged-chr10-127937068-6	chr10	127936562	127937562	+	870.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	38527.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	5.42380691889115	5.24783107739555	5.32326476557351	5.142639838131	5.41543519462173	5.25989070057453	-0.0980963775362121	0.779643438178894	0.945858003792295
Merged-chr13-22021054-3	chr13	22020558	22021558	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11317.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	2.80022292843008	2.83172006762454	3.01782173848766	2.61675022799474	2.4231502499593	2.54164521897597	-2.1214247582696	0.00991543035076637	0.0998962499850549
Merged-chr7-29859996-4	chr7	29859494	29860494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172740)	promoter-TSS (NM_172740)	15.0	NM_172740	233058.0	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	4.29961750995999	4.51565033261093	4.48100957014607	4.44419706482275	4.15903665916501	4.62604010501169	-0.0577809823717877	0.900251204663214	0.976731893119283
Merged-chr2-68927578-2	chr2	68927078	68928078	+	691.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	66137.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.0348849721464	2.95487315481815	3.12747199162109	2.92673584787121	2.94432668641563	2.84039458305999	-0.613726024546538	0.371278032183428	0.755436533897021
Merged-chr10-84402018-4	chr10	84401534	84402534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	38437.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.21080735375937	6.07996858175868	6.1888992936177	6.17991639910048	5.80480363868308	6.22881081905786	-0.147112778724061	0.62836629591958	0.893655507048326
Merged-chr14-14344653-2	chr14	14344153	14345153	+	715.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-1842.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	2.8259198955273	2.58526208286247	3.02518101417033	2.6760829116468	2.74601272346638	2.80810786385672	-0.388643721947079	0.607165060637376	0.884448083779426
Merged-chr9-83549893-2	chr9	83549393	83550393	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	1555.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.96294932759061	2.82577974437097	2.75197926939302	3.05646464293083	2.71674867015131	2.95241609743443	0.295261185459177	0.685451958891422	0.916264475254709
Merged-chr18-6135144-3	chr18	6134637	6135637	+	962.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 1 of 18)	intron (NM_001039692, intron 1 of 18)	961.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	6.50919170552231	6.79550054083545	6.65130414050806	6.8863015286699	7.17667758644298	6.71042503189322	0.4529164944421	0.101766715609565	0.425709594558994
Merged-chr19-55256456-4	chr19	55255938	55256938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	L1MB5|LINE|L1	3069.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	5.52320472461804	5.5703106997782	5.43308643195933	5.83029688218124	5.94361829512851	5.46582214337121	0.48291675194542	0.149535338480224	0.515961080764456
Merged-chr19-9929873-1	chr19	9929373	9930373	+	838.0	f1_c57bl6.idr	Intergenic	Intergenic	-30340.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.67490394644796	4.57652924280063	4.30568815484295	4.44319696177931	4.56786799608298	3.94974493281026	-0.438771310782477	0.387203826305862	0.767462350491678
Merged-chr1-55739259-3	chr1	55738725	55739725	+	662.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-192016.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.60425599748078	2.56427744373912	2.66440067099076	2.64408996722539	2.51753304773444	2.73751682219426	0.121799743417286	0.872356523602671	1
Merged-chr13-37561061-4	chr13	37560569	37561569	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	215724.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.17444886778336	2.77949910121778	2.80273298465942	2.94518367355129	2.8173685590941	3.11934038165353	0.122620002167313	0.867524269339439	0.969355008301611
Merged-chr6-38964162-2	chr6	38963662	38964662	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	L1MB4|LINE|L1	45176.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.94951486270726	4.43776376013031	4.68362804400755	4.66144912900914	4.8088088851028	4.90009341489714	0.186926937882679	0.662602917544854	0.906804932599005
Merged-chr11-21240184-2	chr11	21239684	21240684	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1152.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.20593565122065	6.30433868577221	6.19617721928512	7.12326360782815	7.11248446603549	6.88016486009269	1.27969020134147	9.41727708283464e-07	5.14506100793503e-05
Merged-chr7-67236489-2	chr7	67235989	67236989	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 11 of 11)	intron (NM_001357324, intron 11 of 11)	13873.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.89071431261328	3.0003873081003	3.00669751743749	3.01776229291692	3.0816793062224	3.19368649968707	0.599651004505383	0.367206927345225	0.752113401392775
Merged-chr6-120866242-4	chr6	120865733	120866733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 4 of 6)	intron (NM_153516, intron 4 of 6)	30003.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	3.51477724764	3.63711890288797	3.6774172902511	3.85894710991214	3.69791915285939	3.6410734445395	0.438148469775094	0.423485446173504	0.792050429285735
Merged-chr2-167005060-4	chr2	167004572	167005572	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8773.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	4.59529376484573	4.15200038015412	4.67186186371256	4.52736408832909	4.4602038294228	4.12359587397568	-0.248874201394266	0.609680069512128	0.885308220347415
Merged-chr4-119539567-4	chr4	119539069	119540069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-92.0	NM_001290696	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	8.40267707303144	8.1830658882559	7.85118180028209	8.1578350798056	7.81291805059092	8.040618949453	-0.229481046273229	0.361292202307542	0.747244701091347
Merged-chr11-115477434-6	chr11	115476801	115477801	+	889.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	B4A|SINE|B4	1634.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	6.55188506047287	6.29988637442515	6.64654926233932	6.38320113771253	6.65175159047125	6.65772493896505	0.112195118834048	0.688379965097488	0.917216444209858
Merged-chr1-161071532-4	chr1	161071099	161072099	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172644)	promoter-TSS (NM_172644)	832.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	5.28136134957619	5.60616004379274	5.62276976647193	5.77794012726817	6.2714055700315	5.71315312548452	0.816614764193201	0.0208337576092026	0.165872672772609
Merged-chr13-37964770-4	chr13	37964237	37965237	+	920.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29471.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	6.75278866575443	6.21682796805466	6.56433644958306	6.29137983620252	6.09213788426486	6.05411663959054	-0.622766363980452	0.0411713736162613	0.25333044855889
Merged-chr5-121384078-4	chr5	121383563	121384563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163470, exon 2 of 12)	exon (NM_001163470, exon 2 of 12)	1346.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	8.06232425632822	8.18090853292078	7.61008695241412	8.09842739365558	8.47371486425943	7.79084610345778	0.252888757312467	0.373403448978589	0.757309922309953
Merged-chr7-128391470-5	chr7	128391011	128392011	+	911.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26661.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	7.12682373213522	7.20476901875898	7.15962532059759	7.00121089386173	7.38120079113855	7.13009405360982	0.0357634793786604	0.885840606119664	0.973636976161493
Merged-chr18-60214428-7	chr18	60213796	60214796	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	2219.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	6.33117093838777	6.4648842696	6.15608680947393	6.91580263254543	6.93259534446505	6.7608322410095	0.861163329145499	0.00132874085532499	0.0224947851657948
Merged-chr9-121314983-4	chr9	121314476	121315476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	17474.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	8.30084748352976	8.59082832656414	8.0042972085428	8.25991738168755	8.60277389216379	8.09036414412137	0.0206560671469593	0.937887359452445	0.986196878700387
Merged-chr9-110478798-4	chr9	110478294	110479294	+	912.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1800.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	5.05870455145873	4.92388421855488	5.04418216944629	4.97855699936312	4.9587692559273	5.2373245111125	0.0989893166115227	0.791252516681533	0.949694766870106
Merged-chr8-122566267-2	chr8	122565767	122566767	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1748.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	6.75874667166865	7.03214637284678	7.15901170012681	6.92221566963621	7.34042857966204	7.18089413873334	0.264707484456004	0.32644738520821	0.71871363873492
Merged-chr2-128801412-1	chr2	128800912	128801912	+	601.0	f1_c57bl6.idr	exon (NM_008587, exon 19 of 19)	exon (NM_008587, exon 19 of 19)	-16891.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	2.99690310836194	3.08091505545488	3.60072624501939	3.08868651761735	3.01795130312971	3.32146565623734	-0.422001416469159	0.545978158147861	0.858477117541284
Merged-chr12-102284403-1	chr12	102283903	102284903	+	769.333313	f0_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	762.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.46799859832896	3.48899827434199	3.59520708659732	3.71828040184749	3.43715799513954	3.66537020785192	0.329631986111686	0.56334495246877	0.865926383742263
Merged-chr18-82855229-2	chr18	82854729	82855729	+	744.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-668.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	7.20612015447059	7.46362968739554	7.14541123909843	7.19492508935233	7.6945784968615	7.31201708399542	0.21131360153342	0.430092783193156	0.796105989515053
Merged-chr6-71627426-2	chr6	71626926	71627926	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 2 of 25)	B4A|SINE|B4	5260.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	3.14312682037841	3.18337441868288	3.26535391850792	3.44083761550838	3.30611666348902	3.3371948750421	0.680845758943234	0.266759442976413	0.664188627163631
Merged-chr6-28430859-6	chr6	28430348	28431348	+	992.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019569, intron 2 of 6)	MTD|LTR|ERVL-MaLR	2947.0	NM_019569	56223.0	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	4.61644662235998	4.8666945951685	5.17581794175274	4.64424096509488	4.75462925620023	5.48214152563119	0.231296984038487	0.623774980270281	0.891590829668629
Merged-chr19-41775978-4	chr19	41775493	41776493	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	26091.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	5.47221789594162	5.3592601580489	5.76337242150056	6.6757407152215	6.75227277125427	6.40251671253979	1.89122519391756	6.33472009680551e-10	7.15195915624142e-08
Merged-chr2-120565556-4	chr2	120565036	120566036	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1677.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	6.11193719134301	5.80136533260502	6.23893110067552	6.4771350357947	6.54111473228095	6.48589207413202	0.74798043353684	0.0099293006563125	0.0999754657563469
Merged-chr6-120821177-2	chr6	120820677	120821677	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	1521.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	6.65095721590443	6.57198691617215	6.43384913931584	6.91074642845102	6.88488136972081	6.7058273345919	0.440570535523269	0.0888121327123067	0.395688580998373
Merged-chr17-47509582-2	chr17	47509082	47510082	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4531.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.92868806071033	5.00809775321867	5.34250171011164	5.30940649469677	5.37386740949323	5.08385131750093	0.364171399763255	0.331526147969765	0.722893808183129
Merged-chr12-51864374-2	chr12	51863874	51864874	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34838.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.33836307608437	4.47562283989868	4.06727159603849	3.71809478580317	3.49329546510907	3.52559567398238	-2.36395661751651	2.92001441779664e-05	0.00100524848852306
Merged-chr11-108846680-2	chr11	108846180	108847180	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 25 of 27)	intron (NM_029606, intron 25 of 27)	-73669.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	3.0457978521923	2.82109444431495	3.35236642509621	3.49037142992864	3.51695102904067	3.25384226221444	1.43440832844337	0.0419368291673034	0.256259064504148
Merged-chr18-38350169-4	chr18	38349678	38350678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11185.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	6.38732114003512	6.62842578498914	6.54369959020832	6.66836146776004	6.92484709414068	6.71888650731199	0.410864769324939	0.12366144200208	0.470659623115383
Merged-chr5-123897974-1	chr5	123897474	123898474	+	695.0	f1_balb.idr	Intergenic	B4|SINE|B4	-9301.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	7.34592006936704	7.59426013061225	6.96960427154346	6.96288991884146	7.29634746503715	6.47611935598795	-0.548874367130764	0.0914580704379416	0.402562585960656
Merged-chr4-8915748-4	chr4	8915257	8916257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	164433.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.49017228799459	4.02335297496786	4.22004196289912	4.64173050442302	4.3827678232415	4.42635600105198	0.583922785520741	0.219158245461157	0.613227215079062
Merged-chr12-85945101-3	chr12	85944610	85945610	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	Lx9|LINE|L1	120160.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	4.49857597309533	4.728064122659	4.5912169801782	4.28565214071577	4.29788535824989	4.06034884139325	-0.985985194809993	0.0307829438117967	0.212211034688648
Merged-chr6-42383362-2	chr6	42382862	42383862	+	897.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-10094.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	5.16480931497851	5.0971163942207	5.29978935269596	4.93839144967789	4.93923646671749	5.14527064402487	-0.380214888850135	0.299529482287459	0.696302212307361
Merged-chr17-87110296-1	chr17	87109796	87110796	+	643.0	f0_balb.idr	intron (NM_019654, intron 1 of 2)	intron (NM_019654, intron 1 of 2)	2617.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	4.26067711679304	4.65028423179178	4.50297371291034	4.39802804526088	4.14382617279978	4.4016084601226	-0.439433234739528	0.34182345006409	0.731017930321085
Merged-chr10-80807435-4	chr10	80806930	80807930	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007445, exon 5 of 5)	exon (NM_007445, exon 5 of 5)	2182.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	3.61816851870639	3.08704880453644	3.23304089051143	3.27623369597572	3.19295908681317	3.47388024973978	-0.0858172083419344	0.897029749502343	0.975903813874861
Merged-chr5-127621326-4	chr5	127620824	127621824	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3932.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	4.14258860658982	3.95730132612092	4.32434614034583	3.69373040366839	3.88208923791314	3.73685826425488	-1.10809646221483	0.0366818136248265	0.235747304247669
Merged-chr6-134152142-4	chr6	134151632	134152632	+	980.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	116432.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.39782063004724	4.10735146257524	4.40405680140264	4.48085505523853	4.23721877204389	4.20157822236132	0.0213341666949188	0.963672379063465	0.991121100730027
Merged-chr5-64861135-3	chr5	64860651	64861651	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57628.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.00725541225892	5.01764439940623	5.15280260465009	5.33574214325404	5.38031256578102	5.46108782875904	0.683690432027778	0.0497084194456615	0.283627147840569
Merged-chr11-75627540-2	chr11	75627040	75628040	+	673.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008850, exon 12 of 12)	3' UTR (NM_008850, exon 12 of 12)	-3480.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	2.99594529292397	2.75969704079497	2.94077618511802	2.80297292793358	2.58256186199646	3.18112163454259	-0.12437981086624	0.872321007468765	0.970261003150518
Merged-chr1-152573251-4	chr1	152572743	152573743	+	985.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51974.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.16171559259468	6.11412130546051	5.68402635769772	5.88906843949018	5.81720864419303	5.69021944566985	-0.371551857062417	0.24713151211287	0.644145276280485
Merged-chr15-62123476-2	chr15	62122976	62123976	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	84219.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.27494312765079	3.29107296184645	3.32428891950354	3.31923687815465	2.90438730062412	3.16657947738607	-0.667141608279624	0.315553204353765	0.709834518424648
Merged-chr2-34976617-4	chr2	34976128	34977128	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14856.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	4.8739962115263	4.87483683369676	4.98943134108506	4.5314672374179	4.5429360296885	4.80781473092089	-0.663442380445209	0.0990006621235821	0.419577424863619
Merged-chr17-26487375-4	chr17	26486859	26487859	+	928.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21113.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.78335287412556	2.73982904546347	3.04491629964051	2.70027281220693	2.86478455346515	2.70011336588867	-0.48387842352856	0.515072965927188	0.84337265078831
Merged-chr6-97310427-2	chr6	97309927	97310927	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 13 of 23)	L1M4|LINE|L1	-57647.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.65137050560185	2.70050591584883	2.83089539253072	2.64638656525764	2.59263566381826	2.66119522618802	-0.522652159637698	0.483125638366068	1
Merged-chr4-62729391-3	chr4	62728883	62729883	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	55409.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	2.63352780910594	2.75312519572493	2.88851160717047	2.87467185236059	2.61496776899951	2.71752951494051	-0.104880710348055	0.888226781540543	0.97401529899353
Merged-chr2-23038301-2	chr2	23037801	23038801	+	788.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	1940.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.27814229991396	5.3162491782529	5.29355715301293	5.5422955646366	5.62398317583335	5.48057951857937	0.502111456055315	0.128139010875181	0.478770840726773
Merged-chr17-83692042-2	chr17	83691542	83692542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14121.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.71333616051391	4.6430612642712	5.03668785330823	5.57904699514414	5.97232618265376	5.34128978391719	1.78128807515077	5.51972727867122e-06	0.000240715653775511
Merged-chr10-88795432-3	chr10	88794937	88795937	+	927.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175158, exon 22 of 62)	exon (NM_175158, exon 22 of 62)	31377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	4.69511666363697	4.42643412597369	4.97272578818215	4.21207469866356	4.21335873279193	4.52025273554716	-1.01620916996098	0.0299100085162229	0.208500903917676
Merged-chr3-133527810-2	chr3	133527310	133528310	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mur2|SINE|Alu	16580.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	2.67123274247784	2.66458766082406	3.10866142810948	2.70333898219873	2.64403060202807	2.72131576344303	-0.706548376380701	0.356419719124984	0.74326734997459
Merged-chr19-44404097-3	chr19	44403580	44404580	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009127, intron 2 of 5)	MIRc|SINE|MIR	3629.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.45409484719832	3.54295449531572	3.3200030423038	3.67257888505675	3.3959581207927	3.6176285226376	0.419446526918636	0.478580609748624	0.823834402333981
Merged-chr15-68053097-3	chr15	68052608	68053608	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205748.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.72433118939154	4.00014434359367	3.61841004566516	3.58643384114645	3.79573094564941	3.69000127121104	-0.332629383244667	0.552023013882787	0.861546661145201
Merged-chr9-22119650-4	chr9	22119155	22120155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2460.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	7.03996062741534	6.98134958759432	7.33100684129354	7.11850023668629	7.2954454167887	7.29033983354464	0.179744791174903	0.470724224885032	0.819654737877908
Merged-chr11-107317906-4	chr11	107317390	107318390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-128509.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	8.35775464445456	8.32121254716749	7.61222776145859	8.35442286480622	8.6666898779414	7.87820918337078	0.278692239789261	0.370812291324385	0.755054550130175
Merged-chr17-35076764-2	chr17	35076255	35077255	+	679.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027366)	promoter-TSS (NM_027366)	-187.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	3.46533071869939	3.44061468087967	3.74984248191537	3.74808153910254	3.73582546414303	4.05024415828345	0.999291702424377	0.0770053903817628	0.365775057391982
Merged-chr17-67193920-4	chr17	67193433	67194433	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160526.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.31658442891927	4.08771582726106	3.85856806549385	3.82694730977234	3.6464432251519	3.767707099798	-1.12974739327436	0.0342288805641196	0.226402311697267
Merged-chr9-58551826-2	chr9	58551326	58552326	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10886.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.30253754511224	3.96969668309636	4.04685119893877	3.97235274252464	3.7517370035759	3.81051576391732	-0.81819427579113	0.113547320985609	0.450185614169275
Merged-chr15-96476006-2	chr15	96475506	96476506	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-15163.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	3.86712399513794	3.65645154579892	3.91784700246035	3.58543848051226	3.64126631844896	3.74324907899989	-0.534371790295678	0.325135391622998	0.717970213571373
Merged-chr9-40414589-4	chr9	40414158	40415158	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	RLTR16C_MM|LTR|ERVK	-38241.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.15537276211875	5.35698577672003	5.50933713817367	5.84981020689698	5.96554344976855	5.42111606079834	0.823319152339248	0.0202033321460687	0.162570163463293
Merged-chr13-93240929-4	chr13	93240432	93241432	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48515.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.30973969160844	6.2889217359482	6.13746759044202	6.6595647260517	6.72662742256973	6.51921880462374	0.631771921829888	0.0190133278357057	0.156206653095715
Merged-chr4-147418413-2	chr4	147417913	147418913	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-134864.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.37774838001423	3.44425061749101	3.6148978861961	3.37696038910732	3.29837174259091	3.2481193988851	-0.646479180770654	0.283835322097055	0.681495289012097
Merged-chr5-36728174-2	chr5	36727674	36728674	+	835.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20505.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.47758547377153	3.29928711667566	3.93915655705599	3.66410004595714	3.46872007115231	3.62652434677682	-0.0177778132909171	0.976978368068753	0.994769134402338
Merged-chr14-55386972-3	chr14	55386479	55387479	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91779.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	3.69188368887167	3.90300720177722	3.51429526669355	3.38591588476387	3.07084809927258	3.17413152447297	-2.13327086386497	0.00141944521840617	0.0237262349805425
Merged-chr3-18625028-6	chr3	18624571	18625571	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144594.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	5.86890458714724	6.15202870824967	5.80074270221084	5.88252961983477	6.2457226089451	6.18723003847558	0.27298131065088	0.385670275018825	0.766641636058348
Merged-chr4-109458217-2	chr4	109457717	109458717	+	820.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	18288.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	5.70954066625023	5.86446562816638	5.73701984110319	6.17227600075312	6.39523988696186	5.79996221750306	0.670865147798446	0.0380830639557446	0.241562401709833
Merged-chr10-62594130-3	chr10	62593598	62594598	+	881.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 4 of 15)	exon (NM_019553, exon 4 of 15)	8200.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	2.97637400887491	3.0067479003856	3.23993139755398	3.52080276864628	3.54728652190165	3.19365578756681	1.53259458506222	0.0205278644884551	0.164207128278732
Merged-chr5-142929311-4	chr5	142928839	142929839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22585.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.91276348429164	6.80275013455454	7.32570265785029	7.21027701843607	7.19786858824012	7.51188693394977	0.429367816845504	0.116897127751784	0.456527560591872
Merged-chr19-56713850-4	chr19	56713355	56714355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8517.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.58678928861111	5.47879345849316	5.38796913506128	5.657997451291	5.35530559250161	5.07105791295167	-0.189937004821799	0.601193154540153	0.881884913086671
Merged-chr9-109057670-4	chr9	109057166	109058166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011637)	TTS (NM_011637)	1585.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	7.03575337034888	7.04736456618246	7.04972277172021	7.05087031421446	7.62235414923039	7.48257448346101	0.54901340538956	0.038122198972849	0.241621474497643
Merged-chr4-137300475-2	chr4	137299975	137300975	+	968.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009523)	TTS (NM_009523)	22840.0	NM_009523	22417.0	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	3.06102433782785	2.9119474363694	3.42289500605635	3.50712057821996	3.32092636886604	3.38648006182683	1.08632118669138	0.106559441928335	0.435854989134982
Merged-chr3-90251066-4	chr3	90250500	90251500	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013901, intron 3 of 3)	B1F|SINE|Alu	2808.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	5.73390064392025	5.83315291735351	6.04835069752231	6.29263683516601	6.01686027838299	6.29152686037095	0.57127191726605	0.0604438013898333	0.318397557992229
Merged-chr12-119386456-4	chr12	119385957	119386957	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56953.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	4.85386119361929	5.16134934894768	4.81511182012473	5.10882052288259	5.13530667623148	5.06858547853383	0.305372049013035	0.423261128562511	0.791868419997774
Merged-chr5-130205711-4	chr5	130205203	130206203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-14041.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	4.38889664332106	4.40533505977642	4.47400382750807	4.30406915763679	4.02558106891201	4.14059231755842	-0.709974754703092	0.12338554962993	0.470042341067999
Merged-chr12-100109688-2	chr12	100109188	100110188	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.47284655912698	4.64751290040343	4.76525799275501	4.38337521984184	4.67883997287524	4.47306126520132	-0.247071130071265	0.569501127280476	0.8688875602138
Merged-chr8-120715421-4	chr8	120714924	120715924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20934.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.1469822157937	7.23054675066068	7.09303942056164	7.20748894520312	7.481612946115	7.40716414828735	0.314772331891852	0.186867381081361	0.571649303125656
Merged-chr8-85077171-4	chr8	85076577	85077577	+	779.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026399, intron 5 of 8)	intron (NM_026399, intron 5 of 8)	3669.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	2.92926734248465	2.72018126193127	2.90679601166963	3.04809712308882	2.70637780322297	3.15304621690279	0.590276543871239	0.42185454063212	0.790756682370678
Merged-chr5-62762742-4	chr5	62762246	62763246	+	906.8214109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3431.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	7.16678857735987	7.00313113279329	6.70775518903356	7.00933312254659	7.32277037420722	6.90934548569413	0.182251134637848	0.510097293532085	0.840695141327821
Merged-chr7-19459846-2	chr7	19459346	19460346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.21832987942819	4.01785547636239	4.66179690070629	4.43380660066324	4.63740064631551	4.45287584018933	0.512856462952975	0.289993650305106	0.687700879517227
Merged-chr11-96976138-2	chr11	96975638	96976638	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	1550.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	5.21266599068512	5.24684769995091	5.81478688663031	5.69424379475917	5.94273101355207	5.8988927649696	0.763658358489918	0.0332547415264389	0.222527002898894
Merged-chr8-94811181-2	chr8	94810681	94811681	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011332, intron 1 of 2)	intron (NM_011332, intron 1 of 2)	728.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	4.06784360796562	3.94004685556452	4.72491356492264	4.19940894656378	4.26692077783327	4.78878183667518	0.396339948402095	0.470673950118954	0.819601499277958
Merged-chr7-25680719-4	chr7	25680210	25681210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-70.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	8.19265426914737	8.11456993554581	8.06144650388242	8.05850030883104	8.38375898049777	8.14533110394395	0.116022408300273	0.59826782843987	0.880699693383778
Merged-chr6-72382710-3	chr6	72382214	72383214	+	892.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2246.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	5.39118388675904	5.73939957940378	5.48322998005137	5.69655244048054	5.66458068131132	5.65980769271598	0.225537145715365	0.493026348383746	0.831208279358962
Merged-chr11-116594972-2	chr11	116594472	116595472	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033223, intron 1 of 4)	A-rich|Low_complexity|Low_complexity	1285.0	NM_009591	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	2.78019202398767	2.90099012403634	3.10571473953148	2.75394138098562	2.91931242766159	3.17643821478387	0.120274969925565	0.868063835406842	0.969593336687463
Merged-chr18-34758730-4	chr18	34758247	34759247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175104)	promoter-TSS (NM_175104)	-103.0	NM_175104	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	7.39115379556925	7.45675749319594	7.37696428432907	7.63472335409746	7.65781041073785	7.45558624484087	0.26430394704727	0.24074446032299	0.63779309813394
Merged-chr4-8699837-2	chr4	8699337	8700337	+	767.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	RSINE1|SINE|B4	9431.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.80137387096483	5.68887839312241	5.81428776426586	5.54209391796971	5.70234546327323	5.851357104973	-0.122631721228413	0.696943212604047	0.919770824023241
Merged-chr2-115582067-2	chr2	115581567	115582567	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207264, intron 1 of 10)	intron (NM_207264, intron 1 of 10)	351.0	NM_001145898	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	5.06213562034992	5.09475624370737	4.90397674345368	5.09612784516739	5.07909039066854	5.00707065987199	0.0718175901712695	0.844908817469083	0.963760118842549
Merged-chr15-88127924-1	chr15	88127424	88128424	+	952.0	f1_balb.idr	Intergenic	Intergenic	-186950.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	6.30839955124093	6.71480590565457	6.42681688060874	4.1843075184054	3.7770599394902	4.38641996949974	-6.83839546134314	1.04988239743494e-18	5.70971336769716e-16
Merged-chr4-55665028-4	chr4	55664536	55665536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132561.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.11419745883323	3.84015534414241	3.76042961713863	3.64753078364075	3.36138374814651	3.55654672416692	-1.3589064984098	0.0180286150761296	0.150963570821636
Merged-chr3-8998515-4	chr3	8998016	8999016	+	956.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5688.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.53914003029335	5.60320378751529	5.5282118827882	5.24937920342267	5.39676994613954	5.5058087434754	-0.336757898541361	0.309139992304651	0.704802606494279
Merged-chr8-70793029-3	chr8	70792546	70793546	+	965.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-613.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	4.52539768457178	4.36517533388449	4.18131130088131	3.91738348388372	3.91116911429661	4.10685214451629	-1.1281220639799	0.0202227047610867	0.162610245241641
Merged-chr7-73527965-2	chr7	73527465	73528465	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B2_Mm1t|SINE|B2	13781.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	4.99660365514866	5.33371882228004	5.2934372317384	5.2542281396378	5.29065100694581	5.65451800218341	0.380182199703781	0.30522778965967	0.701486464326093
Merged-chr11-60933653-4	chr11	60933120	60934120	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	1563.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	4.64750241081775	4.70349404768039	4.61989264546974	4.35160465531554	4.42282806645959	4.34418844300821	-0.708872406540369	0.0949656281299806	0.410893868516428
Merged-chr15-6571761-2	chr15	6571261	6572261	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8086.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.30774400772782	5.69598029805217	6.0486800314585	5.97355073443697	6.09478539711648	5.9785319789903	0.553913340218022	0.111054110003836	0.44511514379572
Merged-chr10-95677719-4	chr10	95677212	95678212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-113566.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	7.02986780132807	6.98319952228509	6.97034101192227	6.68600084387192	7.00144878407138	6.66464288042174	-0.293346173936301	0.257662506374515	0.655089012134593
Merged-chr19-17136975-5	chr19	17136448	17137448	+	758.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	180830.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	3.99880638994991	4.10186446899595	4.01008389308933	3.43462513191178	3.21117313763825	3.98695689034461	-1.51435644431556	0.0188684862351679	0.155439970122005
Merged-chr2-119359670-2	chr2	119359199	119360199	+	772.666626	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	8457.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	4.1015795189193	4.47260181384357	4.41754642450864	3.40878974729944	3.37398141823959	3.69705069051852	-2.92851591260892	1.21026312085323e-06	6.40607975572234e-05
Merged-chr5-113634049-4	chr5	113633562	113634562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9541.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.94547780786731	7.90756330871321	7.53148047417793	7.89272112261706	8.04176465470264	7.47036952094326	0.0263107450623121	0.921270465440798	0.982526400261012
Merged-chr2-181890204-3	chr2	181889682	181890682	+	890.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	25822.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	4.04804895095507	4.01998378680918	4.10479172628529	3.54673221527791	3.44603405927498	3.68593333364446	-1.69608730086621	0.00193563108466711	0.0301610470586107
Merged-chr17-55736869-4	chr17	55736364	55737364	+	900.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13120.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	5.19436708453184	5.39901893114273	5.0249260667146	5.0828596956945	5.09301584673143	5.32288493589488	-0.12793864569992	0.728942906017225	0.930478966998914
Merged-chr10-81174629-2	chr10	81174129	81175129	+	794.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2002.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	2.74006327303369	2.69759505538752	2.88913465807769	2.79261012141007	2.79798020186834	2.58490824838422	-0.213916743101037	0.775169454792537	1
Merged-chr5-9087099-4	chr5	9086588	9087588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13649.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	5.47588118493515	5.30689077957945	5.7221178170699	5.76333115234544	5.40834173308877	6.18787581844959	0.569835926487549	0.132648796393421	0.487414457506459
Merged-chr18-46573045-4	chr18	46572547	46573547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 1 of 2)	L2|LINE|L2	1486.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	5.93279515802221	6.43944932200914	6.31937178441192	6.43138258187134	6.39443848055657	6.43528054313847	0.28199047456993	0.342849938476463	0.731783749249681
Merged-chr11-60930967-4	chr11	60930510	60931510	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	L2a|LINE|L2	857.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	3.79503097406231	3.7243414104549	3.69565212831047	4.125146664077	3.722542780657	3.53734566065043	0.265386622342408	0.641594652718567	0.899095902698814
Merged-chr18-58160709-4	chr18	58160224	58161224	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 5 of 64)	intron (NM_010181, intron 5 of 64)	49202.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	4.07671155848263	4.1037807845754	3.84009982429903	3.7728062907073	3.80365725595527	3.74983196372146	-0.754124328999112	0.145937779845535	0.509404764887461
Merged-chr18-69399582-2	chr18	69399082	69400082	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	53422.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.15310552642428	4.35554888872788	4.02209810450125	3.95930896909959	3.83567511082449	3.71605234208569	-1.03332170205186	0.0454083044717828	0.269016318867077
Merged-chr2-157138307-7	chr2	157137823	157138823	+	960.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3101.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	6.24886347721743	6.249825807168	6.37682060072059	6.48860481516071	6.67873436816512	6.45512993591591	0.430108778682366	0.111773799228117	0.446485286474784
Merged-chr16-35755713-3	chr16	35755173	35756173	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13683.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.81409427211485	6.10711872379256	5.83122379028128	6.47151885954811	6.71363921066268	6.30966760535233	0.980153187711905	0.00119178393150753	0.0206520772070223
Merged-chr17-28015584-4	chr17	28015060	28016060	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65024.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.217075798952	4.90593601257067	4.68966332181109	4.27693040867745	4.69647056984906	4.71621342037705	-0.878496473328425	0.0497151950684394	0.283627147840569
Merged-chr7-118534524-4	chr7	118534019	118535019	+	959.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	5.87287045403439	6.08646487866175	5.7415987391116	6.89578031270643	7.10891529844033	6.32602672506149	1.48667300420834	6.66655479552982e-06	0.000282871336780441
Merged-chr8-41011014-2	chr8	41010513	41011513	+	813.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-6455.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.1910995859972	3.11033445389743	3.14457527788701	3.53983667286992	3.83047702591429	3.91737487231933	2.45024642573421	0.000147507264622507	0.00391883284633128
Merged-chr5-125349947-3	chr5	125349476	125350476	+	735.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8882.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.30530962380096	3.07412055905729	3.38723531373154	3.45215625580887	3.25016953441774	3.29082126179	0.305384878617384	0.62750043011727	0.893285292753682
Merged-chr13-41601204-4	chr13	41600722	41601722	+	958.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4994.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	7.2749622318097	7.16627026141329	7.29129951820615	7.5662523841015	7.89876028570585	7.63443622104495	0.697069366896854	0.0033333213244113	0.0455134559831992
Merged-chr19-8723315-4	chr19	8722805	8723805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002896)	promoter-TSS (NR_002896)	64.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	8.12962459596133	8.66240840322282	7.97918209485778	8.03245553776609	8.47101237531297	8.24053929628155	-0.0498925077384075	0.856088680756593	0.966375464211684
Merged-chr4-130902390-4	chr4	130901878	130902878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10956.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.35309500001938	5.89670315452735	6.31692231558109	6.63341296998385	6.27753855609362	6.17172711754715	0.296009873233559	0.350068235361938	0.738177163457543
Merged-chr7-16189644-1	chr7	16189144	16190144	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	14249.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	2.88351620177955	2.8099162823848	2.81305534371503	3.36792039970652	3.62346846831987	3.27601425487352	2.87368145516969	0.000133355208266449	0.00361474393380133
Merged-chr11-103026287-2	chr11	103025787	103026787	+	722.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	7.6112036835289	7.59172565728044	7.32383637613867	7.14479892952095	7.46810144445182	7.0967063742801	-0.388896196460885	0.125606332783945	0.474191879348443
Merged-chr2-4591813-4	chr2	4591323	4592323	+	939.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	MTEb|LTR|ERVL-MaLR	32069.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.71412352880676	4.63396663307644	4.69389989956506	4.6522511111129	4.77365560776329	4.31940060451118	-0.166102873963226	0.700713201847503	0.921002460903367
Merged-chr2-73485603-4	chr2	73485110	73486110	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	143.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.38595721530041	7.64888267184754	7.34323566112902	7.55543816687514	7.73538923234344	7.28409054497033	0.111461112807717	0.661408624353529	0.90639160796631
Merged-chr17-34144320-2	chr17	34143820	34144820	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1096.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	3.55836252354795	3.71034381962489	3.70606582772149	3.9046093506308	3.9761565559219	3.82897259594885	0.816190907026266	0.12258209232391	0.46841580413801
Merged-chr6-115380993-4	chr6	115380490	115381490	+	851.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	18641.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.2881460036217	6.6460725071468	6.35418545729798	6.65025797256492	6.98751927600411	6.6509875726857	0.533933995707089	0.0622817708913414	0.324264737457067
Merged-chr6-89340219-3	chr6	89339728	89340728	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	22385.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.72427204627863	3.94644356314986	4.23136595326954	4.13363965357418	3.8137984903255	3.7847088583184	-0.166508115353308	0.760760987063039	0.941002855722266
Merged-chr1-164074835-4	chr1	164074348	164075348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	12772.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	5.28377276874558	5.45825225343364	5.42075542564575	5.89165765244097	5.91516953948347	5.65954201849699	0.830772624650513	0.0102462254708189	0.102128405483457
Merged-chr15-99334383-2	chr15	99333883	99334883	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	31099.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	3.55924351264707	3.77917396411317	3.7155864652462	3.60496292060326	3.42604791732704	3.83391654315308	-0.223846496320611	0.695177340448223	0.919230570201314
Merged-chr4-88724198-2	chr4	88723698	88724698	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	2.5267980043564	2.52491649972101	2.59636356232014	2.64082589081823	2.44831350847646	2.96540157484532	0.815726798261126	0.308530692314033	0.704565421726157
Merged-chr10-121429399-4	chr10	121428894	121429894	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	46856.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.86423830558098	4.68956689060034	4.53959060053099	4.47043502140897	4.32084301281375	4.18522099302729	-0.933785383731817	0.0356074438994216	0.231760340424208
Merged-chr3-15331667-3	chr3	15331152	15332152	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001076679, intron 1 of 2)	intron (NM_001076679, intron 1 of 2)	650.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	3.81732627489037	4.16217540246747	3.87906222138777	3.72259611160423	3.77303860371245	3.89851448234521	-0.534969243575711	0.31141423069954	0.706493681156094
Merged-chr12-80818600-3	chr12	80818102	80819102	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	MIRb|SINE|MIR	28070.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.08388395973171	5.34772814794669	5.32645554858669	4.8291195011453	5.33249869994263	4.95313098246706	-0.379406399812375	0.336975331409653	0.726949528325002
Merged-chr4-47351694-4	chr4	47351207	47352207	+	865.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-1515.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.18639344183623	3.86675151151644	4.01118629047469	4.12489621409412	4.13839848255904	4.03122589630932	0.211330154777944	0.668756035160789	0.909385903315998
Merged-chr11-11776148-7	chr11	11775649	11776649	+	883.142883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32813.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.45224175028314	4.53146217649518	4.91377873208376	4.3269237718265	4.21942352577153	4.77631995137946	-0.460945435311047	0.332274090429767	0.723518174479399
Merged-chr8-119829483-2	chr8	119828983	119829983	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	11096.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.55132287686878	3.57518293549436	3.87280496868692	3.57896678699193	3.73841279433629	4.07416235367835	0.45761427703633	0.422774163143217	0.791536876572791
Merged-chr17-28522700-4	chr17	28522222	28523222	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8139.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	4.63907351133977	4.63760208179308	4.72047265410173	4.0808422927902	4.17740279885037	4.71268763099353	-0.812282274377448	0.0865796009823989	0.38978458078971
Merged-chr16-50449305-4	chr16	50448810	50449810	+	942.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-16844.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	3.22509180315786	3.302620507077	3.30904504643561	3.39319100426209	3.08310019606479	3.26695077934449	-0.115559725686729	0.854234183099802	0.965972003144318
Merged-chr6-3488344-3	chr6	3487841	3488841	+	733.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6157.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	3.66336356653538	3.43476831902731	3.98780216015622	3.51808260076915	3.49010137763535	3.78125992265565	-0.374088101980724	0.528658783641474	0.850585575598857
Merged-chr7-126675916-2	chr7	126675416	126676416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133670, intron 1 of 7)	intron (NM_133670, intron 1 of 7)	502.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	5.37983125555312	5.42035438640904	5.37628733150734	5.57098584220515	5.61820695581241	5.74452243011977	0.471701002578083	0.145301003899086	0.508338649447163
Merged-chr3-79228656-6	chr3	79228190	79229190	+	850.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	15771.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.11059952752691	3.79903596401799	3.8494443954505	4.32386452129638	4.62007184329491	4.64804385524343	1.66378568319829	0.000859273544143955	0.016009501357172
Merged-chr5-66095760-2	chr5	66095252	66096252	+	610.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	2427.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.75192355478932	4.00021861070265	4.18419507095967	4.88694209818829	4.88364287327784	4.65236264316992	2.22755656150213	3.12684941804923e-06	0.000146993721116972
Merged-chr4-130878685-4	chr4	130878171	130879171	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34663.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	2.93958119424323	2.74011203552402	2.94577059574764	3.0244114629511	2.82983015354822	2.83458148625082	0.114049608192705	0.872184249712464	0.970261003150518
Merged-chr1-64303771-2	chr1	64303271	64304271	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-182382.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.01182548490222	7.06873378054201	7.02026947492161	6.93473071905094	7.00704993393689	7.10382788969607	-0.0317161003125191	0.89424850213799	0.975428724170495
Merged-chr1-171011861-4	chr1	171011361	171012361	+	915.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7065.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	3.96499421282759	3.81070052927761	4.64884298181419	4.12624621704684	3.87385769702155	4.53810098672711	0.0385690629872725	0.947459780813682	0.988008807662239
Merged-chr11-101660161-2	chr11	101659661	101660661	+	654.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	2.75111073231991	3.19643727604542	3.19563247573004	3.03297603389301	2.97814420935259	3.15530062960655	-0.0384602154218437	0.957053243449759	0.989887454023164
Merged-chr14-73384364-4	chr14	73383847	73384847	+	866.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	942.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.9407075394114	8.0719997034324	7.76434405501846	8.2539663571014	8.4659682303177	7.60900578055673	0.330115677858108	0.246873789773608	0.643986348521616
Merged-chr11-4190826-4	chr11	4190301	4191301	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	3968.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	5.39694487266929	5.4856296505121	5.17880033410959	5.01121057266511	4.70518765103754	4.79731368827781	-1.10974751293188	0.0033966443175237	0.0461433437342877
Merged-chr2-133511639-4	chr2	133511143	133512143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40516.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.74066360330692	3.55196975832575	3.61022475860577	3.81301765315953	3.68493070810998	3.51233316757205	0.144680756680549	0.795984815027366	0.951396269938008
Merged-chr10-99168591-4	chr10	99168083	99169083	+	968.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	60448.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	6.54759534041737	6.309835094598	6.0683171541657	6.44688596794997	6.16586636274314	6.15253069227262	-0.115865408873575	0.701867046837645	0.92160130715755
Merged-chr17-26168184-4	chr17	26167701	26168701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159598, intron 2 of 9)	ORR1B1|LTR|ERVL-MaLR	29515.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	4.82139423337496	4.65617980684696	4.91921195535164	4.90004524304882	4.60293221603357	4.68332811584336	-0.14737699817545	0.718009874386708	0.927249469209724
Merged-chr15-12312070-4	chr15	12311577	12312577	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9419.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	3.9497763288938	4.14425058899024	3.79235817519845	3.76486815790662	3.72148618375504	3.58294226513472	-0.897735964181988	0.0982227314131286	0.417784440377132
Merged-chr14-20693514-2	chr14	20693014	20694014	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 22 of 22)	intron (NM_172596, intron 22 of 22)	-1454.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	3.01492777157637	2.99857754074375	3.29763768840703	2.93815818503001	3.04550179753397	3.36753799410264	0.0808276233558223	0.906138627709297	0.978582776260923
Merged-chr17-7928032-4	chr17	7927536	7928536	+	798.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145968, intron 4 of 9)	intron (NM_145968, intron 4 of 9)	2036.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	3.2976480600136	3.42526854301251	3.41477287785029	3.4891972578795	3.80722854798465	3.84833530554576	1.23943516228454	0.0348690673350409	0.229032629840076
Merged-chr6-88831674-4	chr6	88831186	88832186	+	886.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10249.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	4.53967525454686	4.43038895831137	4.32623547051381	4.59520665553694	4.61058109530228	4.19932943306127	0.133848140157361	0.768700140348254	0.942908054936408
Merged-chr17-34137139-1	chr17	34136639	34137639	+	546.0	f1_c57bl6.idr	exon (NM_010386, exon 3 of 6)	exon (NM_010386, exon 3 of 6)	-8277.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	4.23581772610685	3.77317451783334	3.97073482326206	4.27953173508674	4.19406389226606	3.98997608899974	0.439632499984937	0.394987669339775	0.772579826044138
Merged-chr6-148990069-4	chr6	148989569	148990569	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43599.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	3.07622865067923	3.24941206189097	3.61971279409924	3.37301298167394	3.36738242682315	3.32370050418054	0.111715719338914	0.862423137947149	0.96807605498315
Merged-chr10-71356329-4	chr10	71355800	71356800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	L1MC4|LINE|L1	8537.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	4.5828721062887	4.55934851710579	4.56814546445373	4.66009289914154	4.25400404298306	4.71257547920217	-0.0573053880804307	0.896988045897872	0.975896722320477
Merged-chr2-30472132-4	chr2	30471632	30472632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030244)	TTS (NM_030244)	2067.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	4.96377782479438	4.76344569175884	5.26903075795514	4.97505858563353	4.61150937751665	5.05473273372754	-0.263446519559471	0.530195991299179	0.851070276054813
Merged-chr15-74938913-2	chr15	74938396	74939396	+	609.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16155.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.79065674650201	6.91584016356586	6.49049035501522	6.3557392365504	6.64232839086346	6.15552609846032	-0.538240504493972	0.0717832420775882	0.351638997220767
Merged-chr4-116507584-4	chr4	116507139	116508139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008389)	promoter-TSS (NM_008389)	90.0	NM_008389	16351.0	Mm.1350	NM_008389	ENSMUSG00000028696	Ipp	D4Jhu8|Mipp	IAP promoted placental gene	protein-coding	6.26358175380192	6.65101563092454	6.3624940708193	6.1417873271452	6.2565288021503	5.83150383416809	-0.562522515557718	0.0686507936500746	0.342833707720286
Merged-chr5-21356644-2	chr5	21356144	21357144	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-16029.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.1050230205599	4.1902214785846	3.99087348057239	4.65094273367733	4.48347944411371	4.61094631691235	1.25116521480804	0.00645754701356466	0.073706388464292
Merged-chr19-5804498-2	chr19	5803998	5804998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1826.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.43941375839623	7.52767322771378	7.59122568298922	7.44506936984831	7.75432135116638	7.64798130140426	0.155391051310422	0.502623103598863	0.836562439638842
Merged-chr16-42897321-4	chr16	42896822	42897822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040402, intron 1 of 3)	intron (NR_040402, intron 1 of 3)	-10323.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	5.27112933783138	5.26490813133445	5.15233174662228	5.40285424465159	5.18587867109458	5.43592657852484	0.205721344905379	0.556472934924756	0.863603167403937
Merged-chr10-79960032-4	chr10	79959542	79960542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175450)	promoter-TSS (NM_175450)	-110.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	4.97561792796247	4.82498883015864	5.23078796570914	5.04434598464079	4.94238745932983	5.1378717310251	0.0603511663081927	0.874955009225976	0.970826584625822
Merged-chr1-75521504-4	chr1	75521020	75522020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027886)	promoter-TSS (NM_027886)	-9.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	8.31822550918642	8.79633903605107	7.9446878390764	8.39911538036172	8.53204536520444	8.07903341576178	-0.0761106893487728	0.791804826293741	0.94981786289531
Merged-chr5-66086843-2	chr5	66086343	66087343	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	PB1D11|SINE|Alu	11336.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.27372257371553	6.39255436451496	6.35546653036551	6.34947954108952	6.38728528360235	6.17016770531098	-0.0454072242146732	0.86871297503337	0.969708434868159
Merged-chr16-33892186-4	chr16	33891696	33892696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62531.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	7.44462891621686	7.63002939174912	7.43120017341581	7.48980723422161	7.82668270341707	7.35586438436296	0.109760134013591	0.662537844414013	0.906804932599005
Merged-chr3-146501793-2	chr3	146501293	146502293	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010318, intron 1 of 2)	intron (NM_010318, intron 1 of 2)	1957.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	4.32449869115718	4.48474008928418	4.30835393694906	4.26142649013485	4.43253522070693	4.73752281959334	0.265593520836949	0.561230419668129	0.865407801976397
Merged-chr13-63239985-4	chr13	63239489	63240489	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110521)	promoter-TSS (NR_110521)	-40.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.25313799304116	6.69721504984103	6.07578267017491	5.9759878748653	5.91311379500229	5.66642697339636	-0.872868250067277	0.00812377601609304	0.0869834100031606
Merged-chr13-34278322-4	chr13	34277822	34278822	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66860.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	6.6984596178603	6.61440396561758	6.39817767444522	6.61320728283886	6.57478788843037	6.73451174977754	0.083314967941379	0.753837231006603	0.938570691167124
Merged-chr6-71494862-2	chr6	71494362	71495362	+	644.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009543, exon 1 of 4)	exon (NM_009543, exon 1 of 4)	985.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	6.71855646308546	7.00791248367111	6.9221472944268	6.99687331341722	6.93961841366895	6.6203331892084	-0.0262915330901698	0.921610399968957	0.982542868764899
Merged-chr2-29052472-2	chr2	29051972	29052972	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	2594.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	5.29859814320518	5.2299011753794	5.52114306315144	5.38563228650618	5.40614164335738	5.58313578668565	0.21403439126123	0.531669532487732	0.851792887243639
Merged-chr4-130839057-2	chr4	130838557	130839557	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46520.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.39738185796184	3.25830092407873	3.36788619952595	3.10525680479243	2.9256392791176	3.15730442768276	-1.23347845171121	0.0596270191773427	0.316076002529677
Merged-chr5-137755470-2	chr5	137754970	137755970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	9501.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	2.73628694697322	2.86758998459827	3.44789057776532	2.94289983442808	2.89107363852428	2.73392932009582	-0.878172365300569	0.263632899082107	0.661550899207574
Merged-chr5-123394626-4	chr5	123394122	123395122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-176.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	8.14840358544897	7.90201840043225	7.7549598660396	8.00540126849878	7.99086640506306	7.6341050259938	-0.0799971198943634	0.744267847564756	0.935908101256887
Merged-chr8-61518798-2	chr8	61518298	61519298	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 18 of 21)	B1_Mur1|SINE|Alu	31064.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	3.52575407941633	3.67718770314465	3.6104468292241	3.37794682038265	3.21359410018236	3.29211122194051	-1.20684653424256	0.0439641188795505	0.263786377325404
Merged-chr11-51931964-4	chr11	51931459	51932459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-35672.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.71045155848792	6.63302927584911	6.74892631812216	6.6694870044553	6.84215949228713	6.44765185506477	-0.0317206671138584	0.905756908376251	0.978477108851411
Merged-chr2-124703551-4	chr2	124703070	124704070	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	49989.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.09018680395543	5.01934416439645	5.26274460274654	5.55119105607509	5.44634374564728	5.83206837675977	0.96444532917125	0.00643865967998904	0.0735513446804678
Merged-chr2-90460158-2	chr2	90459658	90460658	+	941.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 8 of 23)	intron (NM_008982, intron 8 of 23)	19016.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.80137782370504	2.53314227607489	3.20212591717507	2.88625092853701	3.00357082326114	3.1109776719499	0.591490397989342	0.460949661910956	0.814802506471053
Merged-chr19-6360154-5	chr19	6359707	6360707	+	874.9500119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3483.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	5.25275210098155	4.88036986512869	5.12512246060447	5.78783240052302	6.11471919885476	5.07807029080415	1.23988996870598	0.00336063030870429	0.0457586854404625
Merged-chr14-65380660-4	chr14	65380175	65381175	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	21999.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.47783397771201	4.59245838097327	4.26497673625109	4.16836188020811	3.85534004701168	3.9869505852606	-1.26030970190213	0.00969537409922812	0.0983580453607137
Merged-chr10-52419565-4	chr10	52419070	52420070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2023.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	6.87115502418888	7.03936553851383	6.78444684285484	6.54826221339718	6.42678472469611	6.47321386993619	-0.672023746223488	0.00935118665105582	0.0960253657733004
Merged-chr1-152801256-2	chr1	152800756	152801756	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	B1F|SINE|Alu	1103.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.2040229477728	7.23609366956736	7.14105770141623	7.20472184478169	7.51965151125765	7.21112146548248	0.196984874850795	0.419606025483783	0.789101346301465
Merged-chr12-84764968-2	chr12	84764468	84765468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	8144.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	4.97222682492574	4.80624192318892	4.98262771237213	5.13126259295706	4.98417056741069	5.04736867861432	0.291239083867725	0.435528658529553	0.799106254000597
Merged-chr2-180043191-4	chr2	180042680	180043680	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	697.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	6.93138901096436	6.92520994212128	6.91522087867354	7.10927796068337	7.0145871924017	7.31778957454845	0.336476050092688	0.171020507790922	0.548963962743078
Merged-chr4-133619945-2	chr4	133619445	133620445	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	13484.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.36203014141559	3.48676327156184	3.38001492029955	2.86656555612278	2.8210603996532	2.98364054289771	-2.57855795983395	0.000400258924999601	0.0087991399290269
Merged-chr10-98612115-4	chr10	98611554	98612554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260187.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.38649707135232	3.98332213890388	4.064562777758	4.23531095968502	4.01304474307319	4.13403766690064	-0.0952520951356031	0.847951224463875	0.964318271116593
Merged-chr11-48789990-2	chr11	48789490	48790490	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10370.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	4.63369575510289	4.53824148971247	4.50273712254196	4.61196788256833	4.21482579313738	4.61054661901208	-0.197427067414764	0.657347807305913	0.904798742244684
Merged-chr7-125601924-4	chr7	125601436	125602436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.71249522485219	6.68484175686227	6.68054499650912	7.25043092008081	7.4963187129365	6.88335161203935	0.844946877973076	0.00200329410303182	0.0310236545179734
Merged-chr1-136658948-2	chr1	136658448	136659448	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24448.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	2.84837816616619	2.88284613107638	2.69253672507981	2.74933725144195	2.66220239391752	3.00895629079741	-0.0246702113509687	0.973510979146405	0.994039095662068
Merged-chr3-75297631-4	chr3	75297165	75298165	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27587.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	6.41537146123149	6.39923950954662	5.97200389218489	6.25751615695586	6.66394564632705	6.32637620660137	0.242311917413408	0.433419395529686	0.797815674529737
Merged-chr15-76904254-7	chr15	76903776	76904776	+	978.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012053, intron 1 of 5)	CpG	205.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	7.49433552177782	7.6338920848168	6.93973211096634	7.23142724315763	7.08050334462486	6.7053063831289	-0.548239728077337	0.068842857510974	0.343277790362146
Merged-chr11-50292475-4	chr11	50291981	50292981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175334)	promoter-TSS (NM_175334)	-145.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	8.57934180290704	8.78992693581164	8.22676030616765	8.37891649150861	8.36896102655725	8.39459683220377	-0.249210212059487	0.287584726053884	0.684941523503741
Merged-chr8-120104871-4	chr8	120104363	120105363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3391.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	7.49623454618977	7.57973707526316	7.27449645546656	7.698232870019	7.85173043055719	7.47846312950017	0.333725665714354	0.171012656487364	0.548963962743078
Merged-chr16-58503075-3	chr16	58502576	58503576	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	L1ME1|LINE|L1	20350.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.41499001342963	6.25063493478517	6.34671300349244	6.48101446965508	6.76257349011569	6.63771397464872	0.480943987199024	0.0758256002044594	0.362539808419832
Merged-chr2-133498517-2	chr2	133498017	133499017	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53642.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.30536509515112	6.17871325563461	5.96310431058831	5.77068156182811	5.722678647549	6.04716863015791	-0.558548172578613	0.0699995800832923	0.346414352868369
Merged-chr11-8663033-3	chr11	8662550	8663550	+	555.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	1485.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.25752580339352	5.31897209325104	4.99187442695163	5.27168713637938	4.76993879091584	4.7802319776157	-0.502334331144248	0.215068047513834	0.608376069948362
Merged-chr13-114387993-4	chr13	114387466	114388466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010887, exon 1 of 5)	exon (NM_010887, exon 1 of 5)	128.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	5.69471274023121	5.86169520170825	5.95895793433524	6.18092939524577	6.14196627220174	5.7967724341803	0.391674789386475	0.208344569992601	0.599216583593528
Merged-chr2-90940937-4	chr2	90940401	90941401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198683, intron 1 of 13)	CpG	504.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	7.77331922123336	8.00623726556113	7.61850335902131	7.54576520666948	7.67999576655478	7.618032844597	-0.286862896975971	0.220035209013673	0.614466077767587
Merged-chr1-171321609-2	chr1	171321109	171322109	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	2.87531632951504	2.83514849869694	3.10749727102184	3.16368243084717	3.08922681447629	3.00302499486185	0.700388317068064	0.304627413167742	0.701018800676517
Merged-chr17-65718789-4	chr17	65718275	65719275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 2 of 6)	MTC|LTR|ERVL-MaLR	53977.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.53297993377845	6.16666570063062	6.44823406766058	6.74594155132417	6.74757377886949	6.35384718324201	0.399462464515169	0.170404151338061	0.547769223545867
Merged-chr9-106477153-4	chr9	106476658	106477658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	-151.0	NM_145620	27966.0	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	5.99912472496548	5.94559850240168	6.0049553272526	5.93117046236701	5.97016420216076	6.08757848460238	0.0199057949843718	0.945265510688768	0.987875414328125
Merged-chr3-59224931-3	chr3	59224422	59225422	+	806.43335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14040.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.82526366735439	4.70961665898445	5.06461274542844	4.8898931512121	5.06449588005504	5.50221627269546	0.645138286773604	0.116732763002858	0.456206482086735
Merged-chr6-83600072-5	chr6	83599590	83600590	+	793.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27586.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	6.79239412667057	6.32481104535875	6.39438348754705	6.86077651295027	7.04659310989971	6.45467772380647	0.464422861534733	0.132848699195742	0.487694104062442
Merged-chr5-122157313-2	chr5	122156820	122157820	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-959.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	3.65118720853106	3.83966656156867	3.78355795660576	3.59229528431319	3.80233742457063	3.8025279000941	-0.0774048494680705	0.885833262125137	0.973636976161493
Merged-chr9-83831298-4	chr9	83830787	83831787	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	5.47301591619073	5.42617835990623	5.20406839308507	5.5386665693079	5.51349428317831	5.12571060269882	0.0713688078568517	0.84203870800571	0.963002495523594
Merged-chr9-41135036-4	chr9	41134529	41135529	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	23033.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.3327269436509	4.95438539301961	5.26776315479999	5.01069986551388	4.88602774371225	5.10876744398866	-0.413156241996435	0.277096334275045	0.674343034039447
Merged-chr10-37338394-4	chr10	37337936	37338936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199510.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.60119540219929	7.62538488369935	7.62152216570866	7.28882911661786	7.75693949711008	7.56494027926849	-0.0861127013951256	0.72360458561121	0.929080851011554
Merged-chr14-55730343-4	chr14	55729837	55730837	+	969.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8074.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	3.59447785057479	3.62412295204334	3.44409089802407	3.5164780254793	3.4517668289295	3.87456681240699	0.201826765552379	0.73057136262191	0.930911472656386
Merged-chr4-156216312-4	chr4	156215799	156216799	+	929.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172417, intron 1 of 3)	intron (NM_172417, intron 1 of 3)	372.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	6.12666434817284	6.14401958318997	5.42839172550565	6.31112605337768	5.87030050154354	5.80007161405885	0.111390684866303	0.76430369550076	0.941979298344481
Merged-chr8-41047451-4	chr8	41046955	41047955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5524.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.6667343947902	5.52475159084708	5.71138666745119	5.76072186048642	5.70721768920024	5.07153250791173	-0.130219710904302	0.725521735179808	0.929698613727862
Merged-chr1-163926533-4	chr1	163926034	163927034	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-2566.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	3.35280862029881	3.12685281295393	3.14678960508953	3.3712532753836	3.19547235713051	3.49993726228096	0.56052434362382	0.377943985858181	0.760236986300041
Merged-chr15-83447677-2	chr15	83447177	83448177	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	203.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	2.95608218929862	2.78829938863363	2.84162794017585	2.91897682109267	2.84597360398149	3.09025025596872	0.416886876300977	0.552100286003697	0.861546661145201
Merged-chr7-90048919-4	chr7	90048427	90049427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110364, exon 6 of 6)	non-coding (NR_110364, exon 6 of 6)	19768.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.35088206496882	6.25657101350752	6.14499886571961	6.48519989047316	6.52449380208742	6.35190477494325	0.33130735486283	0.225665371340202	0.620676402041606
Merged-chr1-58774115-4	chr1	58773633	58774633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21241.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	5.53383849966606	5.35705616775579	5.76486632654464	5.47029914891131	5.37641308531862	5.729566812954	-0.0552621541583471	0.873690983284959	0.970440430875665
Merged-chr2-59645191-1	chr2	59644691	59645691	+	1000.0	f0_balb.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1578.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	2.95065060296125	2.80874673708541	3.07176650681898	2.7715661688841	2.69692639947937	3.0875586994331	-0.430595503112881	0.555644442820265	0.863297992583056
Merged-chr9-63602561-4	chr9	63602055	63603055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	-62.0	NM_001311098	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	7.44185089158111	7.76057789622736	7.48486576619357	7.48882222630743	7.79379372411532	7.07371335901605	-0.109490564981519	0.698142415249275	0.920221786401984
Merged-chr8-40583555-2	chr8	40583055	40584055	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	51237.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	2.42683076247777	2.39372466139093	2.28005842610913	2.73626674672411	2.41233529405108	2.68037942613875	1.51867629226788	0.0770657826894092	1
Merged-chr11-34043032-4	chr11	34042526	34043526	+	921.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	A-rich|Low_complexity|Low_complexity	-3902.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	3.96022010703597	3.86216939750307	3.75169386710314	3.81210577116885	3.79134588017468	3.87379984469624	-0.135048930710192	0.794019858296807	0.950531747588938
Merged-chr10-13200637-1	chr10	13200137	13201137	+	829.0	f0_balb.idr	Intergenic	Intergenic	-7500.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	3.5089754198154	3.48318946098343	3.94716748320289	3.64364106906575	3.83760149757753	4.18544524438879	0.795362136336435	0.176477007667303	0.556792888711217
Merged-chr4-142084038-7	chr4	142083549	142084549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-249.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	7.27798714776042	7.58965795974487	7.2036828664189	7.50757232204889	7.83870874281873	6.95666976261627	0.182017664087329	0.552546133364673	0.861794619516091
Merged-chr19-4181159-2	chr19	4180659	4181659	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5680.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	3.84291462892086	3.55700999380451	3.3704639587661	3.36441964653266	3.29161332592478	3.50076176299091	-0.844531157833931	0.167104120779824	0.542760172575035
Merged-chr17-34355181-4	chr17	34354676	34355676	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 1 of 8)	intron (NM_079835, intron 1 of 8)	354.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	5.56712227023117	5.42494371701309	5.51463769001552	5.92008037728144	6.05323807911617	6.27405457828943	1.0453250220469	0.000914058810632826	0.0168102109498045
Merged-chr2-53191983-4	chr2	53191492	53192492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-92.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	7.88216394822322	7.9717259524593	8.08472875550737	7.94386845402008	7.81317894087763	7.84254746107658	-0.159086043340512	0.459914938447808	0.814054033257842
Merged-chr15-83124051-2	chr15	83123551	83124551	+	969.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1250.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	2.49174853746701	2.63026797702505	2.38375244946341	2.51746353034762	2.41394550367607	2.71077036570382	0.231342005300397	0.777278803347098	1
Merged-chr6-38355403-3	chr6	38354984	38355984	+	926.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347122)	promoter-TSS (NM_001347122)	-881.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	6.4591325160058	6.54040884061135	6.39704330102457	6.87849165463481	6.90896362163054	6.43760260948449	0.476050034333696	0.0888007848697022	0.39565920789495
Merged-chr8-70560300-4	chr8	70559787	70560787	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	20612.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.82126760967527	5.7171481509764	5.38983297293569	4.98409280280837	5.14593886961635	5.15934325780463	-1.14102324079097	0.00139129838738449	0.0233401524632033
Merged-chr18-20896443-4	chr18	20895939	20896939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029491)	promoter-TSS (NM_029491)	-361.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	7.59289837778318	7.83491026128755	7.61560422938214	7.6896041456493	7.49201127856796	7.29095669259273	-0.265088293729379	0.275096339512858	0.672466816815303
Merged-chr14-66186751-4	chr14	66186247	66187247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27077.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.41295456021017	6.20122662364914	6.00474180095238	6.55114642368714	6.62395881781177	6.68871029345542	0.63743490892454	0.0242029424649864	0.183129802366699
Merged-chr14-20546212-4	chr14	20545710	20546710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033571)	promoter-TSS (NR_033571)	-83.0	NR_033571	75602.0	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	7.80811438129681	7.60207394072049	7.91596826997374	7.98076724328674	7.38928773597802	7.72132115395488	-0.0874512127067725	0.738878103106776	0.934106252288505
Merged-chr16-50430424-8	chr16	50429806	50430806	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	CpG	2083.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	6.62608096094453	6.11703785312752	5.64827553905316	6.37544692894776	6.17286137009087	5.83038419504302	-0.0901345182261386	0.812711789575466	0.955736935199777
Merged-chr5-117483073-4	chr5	117482552	117483552	+	941.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	69050.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.44767070109663	3.49974381004832	3.3442982335053	3.28531681797259	3.45684071475729	3.23862292021139	-0.377148354226858	0.536694318460769	0.854161295483793
Merged-chr3-95106252-2	chr3	95105752	95106752	+	974.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293707, intron 1 of 14)	intron (NM_001293707, intron 1 of 14)	678.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	5.91147458278128	6.0436952411472	5.90197538111658	6.27213500029445	6.36936365118225	6.27462551552793	0.595426399233722	0.035401825529962	0.230982129592808
Merged-chr16-4375254-3	chr16	4374685	4375685	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	45313.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	3.96935938328472	4.15246857819849	4.4362456407437	3.73472329478636	3.78016577035674	3.67534439766504	-1.40055466144799	0.00927787655177547	0.0955555826364814
Merged-chr1-171408472-2	chr1	171407972	171408972	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-2841.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	3.94626665674432	4.22260356838043	4.37189111030673	4.28250172912263	4.19054302655194	4.51785284732857	0.390516583917181	0.419940261164511	0.789390924002634
Merged-chr16-17405903-4	chr16	17405391	17406391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023348)	promoter-TSS (NM_023348)	-109.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	7.5451241439989	7.67727995035035	7.52009796621534	7.43841974878714	7.50238960272833	7.11662901916484	-0.310354617269269	0.200160981493991	0.589047961553239
Merged-chr11-100760074-4	chr11	100759582	100760582	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081194)	promoter-TSS (NM_001081194)	-304.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	2.48929485591995	2.48796281090678	2.34513417420404	2.80337193509594	2.580170619643	2.68902162547205	1.44818253410486	0.0781216960410644	1
Merged-chr10-118121251-4	chr10	118120751	118121751	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20536.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.70929301278436	3.41956092799708	3.54882190768494	3.60696481560326	3.09973802309515	3.61969320515115	-0.377404494038407	0.557478356432131	0.864245693030104
Merged-chr12-99224577-2	chr12	99224077	99225077	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	RMER10A|LTR|ERVL	-61769.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	2.18842129419884	2.01702822776547	1.9880624537644	2.20769061467276	2.22285658375303	2.33508959310578	1.3530076064172	0.148827539385483	1
Merged-chr16-35903949-2	chr16	35903449	35904449	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32567.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	7.09724996134151	6.89014351323935	7.15347622675486	7.35026181420042	7.72238701790135	7.30613253945412	0.647613042026101	0.0121367343862599	0.115150900206603
Merged-chr14-21853569-4	chr14	21853062	21854062	+	965.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-4652.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	3.01780724812863	3.21576392295441	2.94427695819327	3.31394913908665	2.91772043455992	3.25888520270501	0.444725111479385	0.52262339945956	0.847682942091387
Merged-chr16-75917852-4	chr16	75917339	75918339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8573.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	3.2198486032177	3.28909444651532	3.44896524492894	2.94065316554034	2.96206360495859	3.19747597909744	-1.26299673569015	0.0582597364871774	0.311867997531206
Merged-chr1-191559968-4	chr1	191559477	191560477	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 8 of 15)	intron (NM_001305233, intron 8 of 15)	15567.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	2.97804440010272	2.96236159802223	3.08906286352867	3.12337311415089	2.93236716218323	3.27212865600978	0.457485898646972	0.495728128878093	0.832647936932283
Merged-chr1-138186950-3	chr1	138186447	138187447	+	723.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11642.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.3535731575014	3.14298893411436	3.2443997144059	3.08285970731912	2.97637032721	2.89007084391127	-1.17330201667234	0.0837371908916574	0.382962836103928
Merged-chr4-129829937-4	chr4	129829387	129830387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9179.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.89994884548055	6.8044232621852	6.71752762350869	7.21261159758951	7.39538451649472	6.72634986148934	0.520619958763661	0.066509062125947	0.336903749870946
Merged-chr6-54699189-3	chr6	54698683	54699683	+	719.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	17559.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.60269799989731	2.73405098415356	2.76153741984577	3.25212525593721	3.42157805209916	3.09707096559637	3.04408625314687	0.000165193903801672	0.00429143126679035
Merged-chr8-117157905-4	chr8	117157403	117158403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-232.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	7.21860456726416	7.18188343524632	7.16721935553014	7.11562282822149	7.08467389969987	6.96227276254834	-0.196653824882335	0.402230122310001	0.77787096574423
Merged-chr4-32388036-1	chr4	32387536	32388536	+	654.0	f0_balb.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-29399.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.16627720663702	2.12873886792814	2.26596109421685	2.04945316795909	1.86078712071067	2.07789773522385	-1.56279591235959	0.110959224494478	1
Merged-chr6-51546294-4	chr6	51545817	51546817	+	703.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	1024.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.98437992011023	4.59047552176178	4.73968877469783	5.56388419235054	5.41706939056813	4.97123423785805	1.1864579684793	0.00379510709427402	0.0499894366155378
Merged-chr8-69921117-2	chr8	69920613	69921613	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-18555.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	7.65541078755899	7.94340924669952	7.36996643540718	7.60575636438754	7.92536185894034	7.52518289649118	0.0261584594443242	0.922274909798446	0.982542868764899
Merged-chr17-67381997-7	chr17	67381432	67382432	+	858.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-27441.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.4331566803251	3.16532976954682	3.24516325506567	3.05443408737622	3.30853255890131	3.31674251932618	-0.223132474438999	0.728850007720055	0.930478966998914
Merged-chr9-57433954-4	chr9	57433456	57434456	+	696.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	5780.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	4.20426981331611	4.22016810009387	4.00032134766735	4.20870194747769	4.27812770362544	4.2172734019655	0.232162435659602	0.620752974096264	0.890308839459615
Merged-chr3-79627724-1	chr3	79627224	79628224	+	696.0	f0_balb.idr	intron (NM_025794, intron 1 of 12)	intron (NM_025794, intron 1 of 12)	1043.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	4.60757749057693	4.73072383925914	4.33553355918671	4.67211417373816	4.46523142547219	4.40508010267739	-0.14089254119885	0.750153737781147	0.937550343416037
Merged-chr13-94709840-3	chr13	94709318	94710318	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79125.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	3.20592141225941	3.21030025992875	3.26421201351575	3.24979579094807	3.34608828568421	3.39053108986316	0.42330735724081	0.487600930244117	0.828533944913187
Merged-chr7-98770612-3	chr7	98770130	98771130	+	636.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-64482.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.67053349488094	4.82703820869577	4.66344170910362	5.40384683133476	5.62711063603667	5.22920348338153	1.49801619733409	8.67878070456609e-05	0.00252233316404308
Merged-chr7-17058524-4	chr7	17058003	17059003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	-1824.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	5.64197474988179	5.80478072999545	6.16757853339573	6.24717530458113	6.23465366490978	6.30546596306506	0.661734139099354	0.0323792594352405	0.218723872000602
Merged-chr10-6718105-2	chr10	6717605	6718605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40488.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	5.97841846016384	5.76590657180148	5.84220074359065	6.05967996213646	6.02142873815349	5.69056324145204	0.138280480907333	0.658147325959462	0.904937992416562
Merged-chr16-95932379-4	chr16	95931873	95932873	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3296.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.61416697892563	4.73931879931951	4.79897136681615	4.65420486812513	4.41167349706144	4.86363047759523	-0.173605992269489	0.682859778506844	0.91523316791368
Merged-chr12-85964683-4	chr12	85964194	85965194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	114347.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	5.46997442431269	5.5389368519221	5.43787981376849	4.93642241005054	4.96929648907839	5.1240074564579	-0.976784667722958	0.00523839123054265	0.0631979204742632
Merged-chr6-117900832-4	chr6	117900344	117901344	+	948.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	504.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.93703747914419	4.70243855700647	5.12297735455882	4.59647535251013	4.75291200565598	5.21584085811449	-0.117400496073958	0.785869354635584	0.948198559524928
Merged-chr6-129234118-4	chr6	129233633	129234633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3912.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.10668218980432	6.91181514130854	6.95843822867526	7.2148248055225	7.36489203398765	7.35900110438422	0.478301042692965	0.0454014996883721	0.268995157082744
Merged-chr16-24930852-3	chr16	24930301	24931301	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-128838.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.74417277121674	5.81648136670841	5.95612525667678	5.40254418484914	5.54473363567457	5.73364243273237	-0.506793949343879	0.115055880239623	0.452801315520848
Merged-chr10-40141127-4	chr10	40140638	40141638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1116.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	7.537156934569	7.7979179964524	7.57822826731879	7.54042931705843	8.02426290544031	7.54587036150071	0.12772670799147	0.622296101135883	0.891053569604973
Merged-chr18-70621761-2	chr18	70621261	70622261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	53469.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	4.24691497465907	4.27380030041207	4.34500801419067	4.57405644911492	4.26282608379613	4.76533738760088	0.646379072811797	0.16036795649783	0.532965919658045
Merged-chr15-89357654-2	chr15	89357154	89358154	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001115132, intron 1 of 19)	B3A|SINE|B2	1935.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	3.20776718486575	3.25265881380779	3.68724750731822	3.51314868593223	3.36188905937933	3.50531260272892	0.256364288635996	0.681209475208401	0.914599647187446
Merged-chr2-104122726-4	chr2	104122212	104123212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026634)	promoter-TSS (NM_026634)	-57.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	3.65413775804231	3.8100763719119	3.48669017303898	3.54027924957734	3.43941815163895	3.4432182756912	-0.676662677165221	0.241637169578523	0.638749787436033
Merged-chr13-20133876-4	chr13	20133378	20134378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	43371.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.04993587994099	5.16407364087767	5.25949640501813	4.90208063375799	4.95525165715738	5.13383597881619	-0.341982750407514	0.353395388058578	0.740706905704882
Merged-chr14-61548769-4	chr14	61548268	61549268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 2 of 3)	ORR1F|LTR|ERVL-MaLR	8118.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	5.9026883590537	5.66248836421809	5.49967119862879	5.5633558800574	5.73533158816741	5.80780695621589	-0.0090632428120165	0.978038116207081	0.994994154947079
Merged-chr7-143830157-4	chr7	143829673	143830673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007856, exon 2 of 9)	5' UTR (NM_007856, exon 2 of 9)	7006.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	7.32574456528354	7.7263254347113	7.14257951328167	7.41966864257676	7.80574719114383	7.14708731767849	0.099445897827737	0.73924834989566	0.934198661960362
Merged-chr1-64367180-3	chr1	64366679	64367679	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165625.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.79597551094964	5.90431996143681	5.86853026107071	5.68677421826413	5.94079064478437	5.88144817850791	-0.0231265971779934	0.939616591866293	0.986720663284284
Merged-chr5-52833996-4	chr5	52833494	52834494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-141.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	5.89215928702454	6.22572604786798	6.26514592354895	6.18144815289186	5.73418001566405	5.86516822217858	-0.336327564846912	0.297717560315846	0.694471216359534
Merged-chr17-23676045-4	chr17	23675542	23676542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181821)	TTS (NM_181821)	1407.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	5.21280108751636	5.22307759432554	4.97051931958534	5.23460369057749	5.24285780004451	5.45942784565826	0.321507523700321	0.371726622890963	0.755815136565724
Merged-chr14-103945897-4	chr14	103945412	103946412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	81230.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	4.11147380188421	4.27202604073984	4.28005152442877	4.26578883661792	4.00316881949236	4.16679840171099	-0.213497536991592	0.652575625669388	0.902986290245403
Merged-chr2-144004388-3	chr2	144003895	144004895	+	638.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6868.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	5.89706280569058	5.92076373371278	5.76279536984666	5.96014697582044	5.97775489798501	5.79851591588724	0.0941231233898153	0.753929971849155	0.938596961228429
Merged-chr7-126272380-4	chr7	126271882	126272882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145587)	promoter-TSS (NM_145587)	-114.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	3.34066813307897	3.68882190556868	3.46770285308861	3.68062066256046	3.25089625710002	3.36715621878231	-0.235739099356741	0.70610343368938	0.922878730238431
Merged-chr16-95724015-2	chr16	95723515	95724515	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21608.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.56363623654113	4.52111466574985	4.2859909486243	4.34913926264087	4.39171697298886	4.64916593814578	-0.0217982253225506	0.960991172545753	0.990386809359123
Merged-chr1-36556149-4	chr1	36555637	36556637	+	889.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	1420.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	6.31607805173732	6.66163730461297	6.79734212680694	6.75526769764279	6.78211177099567	7.03075046195493	0.401727384274362	0.153189392230034	0.522003484275517
Merged-chr11-109269863-3	chr11	109269397	109270397	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 7 of 16)	intron (NM_001165934, intron 7 of 16)	28284.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	2.54602615543673	2.75899121312438	2.5178155176497	2.86270957202221	2.56537188099716	2.8488830870529	0.788120697419318	0.318959426608559	1
Merged-chr5-143270051-4	chr5	143269550	143270550	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017467)	promoter-TSS (NM_017467)	-28.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	4.73105504930332	4.58471534126236	4.65798284195324	4.50078354807283	4.26899595478364	4.34208557895705	-0.718593111357389	0.0952136686669224	0.411175988293403
Merged-chr3-142494086-4	chr3	142493577	142494577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2857.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	5.99324000513004	5.66451661944209	5.71180933363181	6.38573031442009	6.33835785168804	6.34557778329068	0.944472420526738	0.00152699204701402	0.0250317446990043
Merged-chr2-25180649-4	chr2	25180133	25181133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-125.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	4.83702959384398	4.6129587098111	4.50842520394163	4.60335215042703	4.46578339684886	4.53282455215255	-0.325429347665086	0.442731135651117	0.803309923833629
Merged-chr17-27852500-2	chr17	27852000	27853000	+	822.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011432)	TTS (NM_011432)	-4007.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	4.74363088282763	4.7574920821411	5.10083634894179	5.11691331256979	5.32125589839692	4.71630278862819	0.476197169038526	0.254459321181303	0.65145021135346
Merged-chr14-54405993-3	chr14	54405507	54406507	+	854.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	3465.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	7.3036840540001	7.25714443364652	7.19169616482875	7.00637714450179	6.60554972920845	6.41765357485469	-0.833595304670947	0.00261396279321062	0.0379320920993145
Merged-chr10-37376399-3	chr10	37375894	37376894	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237468.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.95007216268448	3.3658481765959	3.11027114536506	3.07282633379449	3.10706246931416	3.35130326138194	0.0876722822741205	0.897278137215149	0.975979061797612
Merged-chr14-19722170-3	chr14	19721669	19722669	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29088.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	3.23106913024668	3.14928411943737	3.16871666447983	3.21443300131397	3.27121813489427	3.35337751098743	0.393289238946361	0.526057980237904	0.849279136234443
Merged-chr3-145939996-2	chr3	145939496	145940496	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	1982.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	2.8419329978211	3.15364837800934	2.96942709573054	3.04134174779306	3.14714635843247	3.21793159296855	0.613498781754024	0.369037188513713	0.753819397358181
Merged-chr16-93819843-2	chr16	93819344	93820344	+	675.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-12277.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	6.39271826435757	6.2364258465216	5.96296637842333	6.56458475730734	6.52229866704335	6.23484854860046	0.38674276215661	0.193212461327494	0.580390703326287
Merged-chr9-118660216-7	chr9	118659841	118660841	+	898.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	-51351.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.6278495113221	6.40828461834236	6.78876799632057	6.47944050894938	6.76658505927607	6.69614491354305	0.0729464082011641	0.791970278855147	0.949839887482488
Merged-chr6-134133906-4	chr6	134133410	134134410	+	778.170837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	98210.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.75270474312006	3.80636028586869	3.65071142083535	4.10496005750481	4.09941881273254	3.72383278254558	0.791081092867339	0.140905737720476	0.501517863985174
Merged-chr18-8638185-4	chr18	8637683	8638683	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-574673.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	3.30611127205872	3.73827414419594	3.42074027918725	4.12491557206867	3.89127952359183	3.83528621297413	1.48659067444487	0.0134637743290176	0.123491460655759
Merged-chr1-16688823-4	chr1	16688311	16689311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 1 of 4)	intron (NM_001159711, intron 1 of 4)	355.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	7.82252582339933	8.23036083564737	7.87053235882494	7.99888946053384	8.38556261979932	7.88559106588762	0.175397085808062	0.498819424351899	0.834135868113764
Merged-chr7-30184095-4	chr7	30183588	30184588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009944)	promoter-TSS (NM_009944)	-83.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	6.97250959517754	6.6047284842495	6.52508614436528	7.14876219509759	6.8992439047716	6.25436124688412	0.168956351115269	0.613332458664344	0.887185353929309
Merged-chr10-70213866-4	chr10	70213389	70214389	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9225.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	6.1746765530807	6.3094876777219	6.31865913186009	6.58261609436936	6.94613989134928	6.16487883052471	0.570143395867424	0.0723157356365594	0.353166318279542
Merged-chr7-43664197-4	chr7	43663689	43664689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4028.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	6.60688039730519	6.31741009648795	6.6764070264482	6.56480059020404	6.71036145541867	7.00126965881865	0.361335414777244	0.204416679631948	0.594949662456522
Merged-chr13-29979387-3	chr13	29978932	29979932	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	4959.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	3.33696462794059	3.45800941052187	3.87799977892905	3.71631845101225	3.45445032491663	3.49608300181577	-0.0338839741235369	0.955718759440901	0.989783387008628
Merged-chr15-60824101-4	chr15	60823622	60824622	+	888.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030696, exon 1 of 3)	non-coding (NR_030696, exon 1 of 3)	958.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	5.87731352151203	6.06031551406072	5.29138945737393	5.29825745501932	5.48889027663667	4.88389534653697	-1.00042785324905	0.0160549735029428	0.139156482836757
Merged-chr15-27679500-2	chr15	27679000	27680000	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	2042.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.15942616457004	5.47393076361248	5.26341459331716	5.51481163655471	5.42672764086774	5.35953834813371	0.249004735093187	0.47282723084915	0.820550293768681
Merged-chr4-135877606-2	chr4	135877129	135878129	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-3783.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	6.93705754985671	7.10291324622073	6.72180149881521	6.70541124104369	7.03651781317819	6.79619067874843	-0.1197451420197	0.657238514829423	0.904798742244684
Merged-chr18-46174093-3	chr18	46173588	46174588	+	834.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 7 of 9)	intron (NM_178872, intron 7 of 9)	24730.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.08576679143104	2.73249468312167	2.85480251766638	2.93288743691806	2.77657980982257	3.1623760229591	0.283877254672701	0.698918239202297	0.920482326683788
Merged-chr12-12277896-2	chr12	12277396	12278396	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	15757.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.85159440285295	6.919370429726	6.99547357807145	6.9111717046872	6.97316418993443	7.09170888144596	0.108322633713848	0.656316071223555	0.904633251888013
Merged-chr15-38078274-4	chr15	38077757	38078757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	CpG	597.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	7.4418875581957	7.35650266475252	7.37386102172765	7.39170052136978	7.11078679527397	7.49261641031265	-0.086240352061663	0.72233760012035	0.92872455507539
Merged-chr11-22813169-3	chr11	22812672	22813672	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46563.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.26735463301721	5.40114913516385	5.24811253468426	5.44078201483116	5.62892639267092	5.40823036424929	0.374696385196613	0.269278569789704	0.666438561847887
Merged-chr17-84347592-2	chr17	84347092	84348092	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	MTD|LTR|ERVL-MaLR	118616.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	2.7941552597646	2.68511995692614	2.63130165839343	2.85020340930684	2.77822355082001	3.18177491578125	1.17808429836213	0.118333068756396	0.459632993421818
Merged-chr11-103173601-3	chr11	103173107	103174107	+	646.899963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	2469.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	3.03554925426671	3.28856416748547	3.24907201250821	2.73437370517598	2.84048976480834	3.15500963643462	-1.29727656844388	0.0748670059299257	0.360171937408491
Merged-chr5-64626547-3	chr5	64626047	64627047	+	820.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15848.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.07571314556606	2.90073698419559	3.1584759215611	3.50511209141293	3.25143102808865	2.98216832068199	0.942783159494285	0.173192164744201	0.55193311543606
Merged-chr15-44619146-4	chr15	44618656	44619656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019480)	promoter-TSS (NM_019480)	-71.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	7.86225835689938	8.10982719166726	7.82350742199933	7.82961817706819	8.04411200046936	7.78614911897516	-0.0647219748465384	0.778906311430219	0.945562264368846
Merged-chr9-70239346-3	chr9	70238841	70239841	+	969.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	31991.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	3.67399999238105	3.55748767818399	3.54255375840357	3.23191501439873	3.34518202771413	3.21051758528972	-1.25477683858998	0.0402936276216608	0.250037450006947
Merged-chr1-182923027-4	chr1	182922546	182923546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31742.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.25990516192186	3.77044573073559	3.90399028300187	3.85843720723036	3.79465819337196	3.87196766109553	-0.490015358420222	0.359686194168386	0.746001337716324
Merged-chr16-36747957-4	chr16	36747459	36748459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37003.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	6.68156543157197	6.62042795913877	6.71081623385204	6.14112045521622	6.40948179636361	6.6772162767018	-0.400624456591707	0.15834933826833	0.530090871069993
Merged-chr10-93069455-3	chr10	93068964	93069964	+	886.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347060, intron 2 of 67)	intron (NM_001347060, intron 2 of 67)	12132.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	4.03580937995954	4.04792384823059	4.18768598556692	4.59128632360965	4.91074965804443	5.09555000314788	2.01482153861455	1.1723646952436e-05	0.00045862774594184
Merged-chr13-24785995-3	chr13	24785441	24786441	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15716.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	3.61497950450101	3.26894082398013	3.14158174254668	3.62691668495302	3.46012585919728	3.51691597819106	0.631077454780097	0.322946008864167	0.716368305445593
Merged-chr7-109481013-4	chr7	109480508	109481508	+	795.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181853, exon 7 of 20)	exon (NM_181853, exon 7 of 20)	12730.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	3.89134416675096	3.99245910241985	4.08777844927616	4.59801377037062	4.80695849002647	4.5659542920952	1.83268665881808	7.50598825906144e-05	0.00222579569158939
Merged-chr15-58211574-4	chr15	58211078	58212078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	3314.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	4.63809860208934	4.15492336583481	4.16113800651419	4.16887623140654	4.16901836509193	4.36767061711604	-0.301214382943267	0.538265805852488	0.855080856348593
Merged-chr19-5645985-2	chr19	5645485	5646485	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 10 of 10)	ID_B1|SINE|B4	8495.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	2.39150070395361	2.31948767670634	2.6596151040193	2.41623760532718	2.14414735054608	2.48986474190601	-0.664626571489286	0.450539119744099	1
Merged-chr2-157500592-4	chr2	157500087	157501087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59491.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	6.66590473003457	6.63529490194548	6.48682054690031	6.85069581649546	6.69050497499016	5.9676275600966	-0.0501111475748883	0.879350335348221	0.972083703102674
Merged-chr4-62299087-2	chr4	62298587	62299587	+	763.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025286)	TTS (NM_025286)	7540.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	3.10278790129823	2.93107515105828	3.19372902867893	2.83538393723649	2.66047739997656	3.15577733014826	-0.868738435410403	0.242394501196564	0.639506411823239
Merged-chr7-116491992-2	chr7	116491492	116492492	+	939.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12377.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.45086718389378	5.43494226051805	5.84907101090871	5.4635671727991	5.50719147139446	5.4437185068981	-0.199702200386307	0.559486863412902	0.864958249988122
Merged-chr9-20977563-2	chr9	20977063	20978063	+	835.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-770.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	5.8451823038371	6.16119772026849	5.83858947622363	5.86205382813662	6.09784722116141	5.8232375244687	-0.0379925731007471	0.904045043013746	0.977986400133752
Merged-chr15-75642455-4	chr15	75641942	75642942	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25758.0	NM_011759	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	3.71120617916745	3.70100402565452	3.52702146032113	3.40593752017256	3.42584268478745	3.48681096901811	-0.786806824874529	0.168900702431412	0.545531802905646
Merged-chr13-81136813-4	chr13	81136338	81137338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.34138782903189	8.41050202134166	7.82278304572706	8.05783689920584	8.39812473710884	8.00233884574989	-0.0760870529718309	0.772747122546325	0.943848608021176
Merged-chr1-120531964-4	chr1	120531473	120532473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26949.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.94404277157163	6.11966891843788	6.08822377541382	6.84180047710362	6.52695494502801	6.45551160670273	0.938405127788619	0.0010925230042795	0.0192977508375998
Merged-chr6-97433552-2	chr6	97432965	97433965	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MTE2b|LTR|ERVL-MaLR	25821.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.10420726943888	4.71422252044627	5.27002521648835	5.14643410085537	4.85374201376113	5.47180697605919	0.268638284441529	0.524950134345842	0.84884700169621
Merged-chr2-120571402-3	chr2	120570938	120571938	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	3767.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	5.9792213821092	6.03516014569219	6.40052064003276	5.44275284332802	5.59227369867946	6.19167209271936	-0.651004568666715	0.0733513279686076	0.355851683014939
Merged-chr3-37420304-4	chr3	37419818	37420818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291044)	promoter-TSS (NM_001291044)	368.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	8.63009811894002	9.01410779382599	8.50059739165722	8.65328103788463	8.9532148375448	8.53371876156776	-0.0116420917638974	0.962612900776188	0.990920491491941
Merged-chr19-4060838-4	chr19	4060337	4061337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1390.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	7.1641403027892	7.21142748425153	7.23949219172518	6.76073586456886	7.00341692848989	7.21686435562608	-0.306382636384627	0.228032900777037	0.623043331183283
Merged-chr4-137995553-4	chr4	137995062	137996062	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	2106.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	7.61097467272472	7.08759072491735	7.30558354039122	7.10883336767092	7.21886000430726	6.83305083695315	-0.422917257012515	0.125222546049753	0.47354314333656
Merged-chr10-93079629-1	chr10	93079129	93080129	+	950.5	f0_c57.idr	intron (NM_001347060, intron 1 of 67)	MTD|LTR|ERVL-MaLR	1967.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	2.30096427021875	2.28020972630321	2.36786439783796	2.81282132314003	2.8127734905663	3.07035244150204	4.57824852566063	7.72237912204682e-05	0.00228021193040196
Merged-chr10-117893340-4	chr10	117892846	117893846	+	992.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32113.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.61167782052259	5.47105747722685	5.83404845789746	5.58858278268055	5.50672043382647	5.77633120607363	-0.0323971924169666	0.922274798215755	0.982542868764899
Merged-chr5-147860597-4	chr5	147860107	147861107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025624)	promoter-TSS (NM_025624)	-21.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	7.62114427869024	8.11124690955562	8.13611964572728	7.79249537209218	8.05363667293983	7.81640975470917	-0.112079336623423	0.659616749243937	0.905565022869367
Merged-chr3-108286404-3	chr3	108285903	108286903	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	2339.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	2.90665462212978	2.76982095110895	2.90242507389411	2.50813736173371	2.48540407856609	2.60680769313131	-1.94972044118656	0.0147525527161451	0.131146410940706
Merged-chr10-20148344-2	chr10	20147844	20148844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008635)	promoter-TSS (NM_008635)	-576.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	2.85595130511225	2.63422450712782	2.76569453466777	2.68405904653718	2.49909954736743	2.58579497669127	-0.925005046423325	0.230329554570389	1
Merged-chr7-132242138-2	chr7	132241638	132242638	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	MER77B|LTR|ERVL	-73526.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.8758175912042	3.99011870169953	4.2124647641687	3.78119777005075	3.64884392222463	3.59839171547512	-1.10824736355765	0.040183840794967	0.249598780220783
Merged-chr14-26675931-3	chr14	26675428	26676428	+	996.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6082.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	2.58130172896979	2.79516256545235	2.69161220474967	2.73147670013179	2.62821681906447	2.9446882787557	0.397609889341295	0.598231192617752	0.880699378545974
Merged-chr6-38691388-4	chr6	38690886	38691886	+	773.916626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28317.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.58157433354965	6.93459653180222	6.40799501237393	6.42127445074574	6.68138892790894	6.19429139680924	-0.333972730666028	0.279003497194343	0.676468683859472
Merged-chr6-38350085-2	chr6	38349585	38350585	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	4518.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	3.32414948015954	3.24049455061243	3.11465791161843	3.39797303267903	3.41527305666084	3.42325516219535	0.703738641356238	0.252750357787724	0.650103828843896
Merged-chr12-95745665-1	chr12	95745165	95746165	+	642.0	f0_balb.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53439.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	5.76953244990227	6.08923908057353	5.7108416336128	5.94696229555747	5.9151242779711	5.90179530593954	0.0774907590322042	0.80402943677132	0.953557286986578
Merged-chr11-60777407-4	chr11	60776921	60777921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	-56.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	9.0882012818477	9.58476232432594	9.04381090406998	9.10533580307988	9.54183379097377	8.87809520820462	-0.075951844325413	0.780189673229518	0.945966807104547
Merged-chr5-66092290-2	chr5	66091790	66092790	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ID_B1|SINE|B4	5889.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.9218493162089	4.08482159914361	4.58669021884749	3.92675118944502	4.02419014933903	4.22313745380257	-0.446793929845941	0.398531644444088	0.775273667788888
Merged-chr4-6356404-2	chr4	6355902	6356902	+	897.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9278.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.4468109199625	7.7125714543668	7.10142695705912	7.1113362752265	7.09834585120597	7.02327931525999	-0.557899303065583	0.0357947235100241	0.232527125814298
Merged-chr4-126259668-4	chr4	126259174	126260174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2731.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	7.40746009302137	7.28938903881861	7.48225169420944	7.29102439361868	7.48813209753215	7.33985255193287	-0.0170647657088165	0.94153989207734	0.987024728112131
Merged-chr16-11174835-4	chr16	11174377	11175377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	1516.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	7.1040069992856	7.15339947973466	6.54572602187014	7.02586492948758	7.32611695559692	6.96788365451396	0.224769885755277	0.441041344183645	0.802215891374824
Merged-chr16-45377561-3	chr16	45377057	45378057	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31496.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	3.42945643709777	3.07757579089668	3.62402922345777	2.76303546250787	2.83748569529192	2.8669046413593	-2.75980793374456	0.000476375006232057	0.0101195331934023
Merged-chr10-40276110-4	chr10	40275615	40276615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18403.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	3.99018713212339	4.15717426728863	3.88595030878062	4.07235992898443	3.90863785751761	4.15098806834315	0.0528188515099095	0.916014023018737	0.981201223155309
Merged-chr10-79984398-4	chr10	79983950	79984950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-190.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	7.48861408618935	7.24590786945787	7.5106061215987	7.63864144058144	7.81226227166269	7.45493435803312	0.341552733518799	0.15897932127359	0.530981871494115
Merged-chr16-91396184-2	chr16	91395684	91396684	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-10051.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.23533642412976	5.01034759265929	5.62090113715622	5.16365764370527	5.24740225240954	4.99040325729923	-0.315345103079211	0.419987800228835	0.789422217114226
Merged-chr9-56958877-3	chr9	56958365	56959365	+	916.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	7941.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	5.0524485472796	5.13210912584133	5.31260852176797	5.38305846590974	5.46875984356823	5.34527277542151	0.488142109475141	0.159694717190996	0.532004565321231
Merged-chr2-69856586-4	chr2	69856079	69857079	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4983.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	3.47833106060609	3.33216494230788	3.45542567580375	3.32222176401984	2.9033305368	3.77253244460779	-0.139922720695963	0.845980888181961	0.963945177091542
Merged-chr4-150508865-3	chr4	150508369	150509369	+	953.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085492, exon 9 of 23)	exon (NM_001085492, exon 9 of 23)	143305.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.48162175620041	6.69535857413339	6.37508163042921	6.10874448172671	6.5577121089943	6.52628216583599	-0.186445169932163	0.528251680235119	0.850495873730805
Merged-chr9-66127289-1	chr9	66126789	66127789	+	612.0	f0_balb.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	678.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	6.05104507960321	6.04078007965218	6.42290096937288	6.5168024188103	6.68637255718233	6.39031734939668	0.614024156796172	0.0350700949272449	0.229824797754097
Merged-chr10-17406588-3	chr10	17406126	17407126	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-310844.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.87263340823639	4.08318757652013	4.26105242178339	3.8648064347203	4.05754620819976	4.40781585543648	0.130920748599441	0.80186613904095	0.953086016975963
Merged-chr10-80963423-3	chr10	80962914	80963914	+	984.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33323.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.3950512163736	4.41112321577597	4.03187295052298	4.26395362612227	3.72721107275628	3.7111688346244	-1.03986109790495	0.0622274932980429	0.324101188189623
Merged-chr5-125388639-3	chr5	125388197	125389197	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019639, intron 1 of 1)	PB1D9|SINE|Alu	1320.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	7.21037337147017	6.86714527450309	6.86577963121704	7.42728841338928	7.61749017311279	7.10952133003955	0.619141186898786	0.023042053201326	0.177411230015354
Merged-chr4-41555433-4	chr4	41554904	41555904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	14123.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	5.47488691216209	5.26632630384144	5.3913909010871	6.78931788929143	6.67781008356962	6.20773462424443	2.1059810923203	8.23756769241034e-11	1.11815910693325e-08
Merged-chr10-16412458-4	chr10	16411960	16412960	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	620683.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.05511313861399	4.00495616831339	4.11603614647702	4.47330752001251	4.29292463550642	4.32323335951877	0.854467009349038	0.065195155346154	0.332868533229599
Merged-chr11-70598705-3	chr11	70598192	70599192	+	817.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-17202.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	3.34511577890375	2.82177557775124	3.0290414805526	2.78523785240773	2.64848410888896	2.85749363031362	-1.61811404716192	0.0342324646402743	0.2264060820116
Merged-chr8-13504114-1	chr8	13503614	13504614	+	875.6666869999999	f0_c57.idr	Intergenic	Intergenic	-9579.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	6.33361414734772	6.26471421740546	6.01041900025726	5.5785748967257	5.70273820398426	5.54039512066933	-1.05976862315533	0.000612816082839625	0.0123345913451668
Merged-chr18-58567998-4	chr18	58567498	58568498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11758.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.86638353966759	6.43917185961453	6.23790477055804	5.60511239723803	5.80451828103482	5.83526846265736	-0.788597852121204	0.0166353646950525	0.142887882153884
Merged-chr9-22307727-4	chr9	22307208	22308208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145612)	promoter-TSS (NM_145612)	-70.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	8.06212896285731	8.385535060909	7.99291264426461	8.20523735421778	8.39541184269258	7.98720815239325	0.0696715066811697	0.774556455063664	0.944477929413368
Merged-chr6-99440066-3	chr6	99439570	99440570	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-4725.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.82833821175891	4.10650924291439	4.03290470686555	3.88181863231943	3.69950884610081	3.80558803979741	-0.6250152221183	0.230177552276644	0.626025160810452
Merged-chr3-100431898-4	chr3	100431401	100432401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	5496.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.5519598052921	4.6081352498454	4.68277709721391	4.91531060767084	4.94387237892129	4.34661350335529	0.381805989764628	0.388913983863707	0.768781380496339
Merged-chr8-104344309-7	chr8	104343770	104344770	+	881.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 2 of 4)	intron (NM_024217, intron 2 of 4)	3676.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	4.09467202032518	4.03974161374707	4.66755010945545	4.21594513031352	3.9017792751221	4.27167483817495	-0.423742060473617	0.421073539398622	0.790122251976347
Merged-chr18-36515822-4	chr18	36515320	36516320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-15.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.63044322486284	6.24391018241453	6.25154664203281	6.59594824029411	6.34762264323552	6.33243085308782	0.0610594491737859	0.835266295099932	0.961603808578136
Merged-chr2-27749981-4	chr2	27749496	27750496	+	792.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39413.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.46586303010101	5.45316012309541	5.43012898802549	5.3391422293153	5.22290557428705	5.43418463449331	-0.244159137334848	0.46676028659957	0.817652165708111
Merged-chr6-122856813-2	chr6	122856313	122857313	+	605.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	-656.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	5.52674224081761	5.23918656586175	5.34161342346112	5.36053306423586	5.34195960382153	5.54962442376228	0.0724094703061185	0.833777715021813	0.961104751385188
Merged-chr10-18048427-4	chr10	18047928	18048928	+	930.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-7512.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	3.27307934173075	3.30918076358813	3.34524608898678	2.99156128557376	2.99146119879045	3.13512292318366	-1.20024318555941	0.0647182025919513	0.331552284279712
Merged-chr16-91538205-4	chr16	91537719	91538719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8875.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.29527747850834	6.14660057967638	6.33283937662132	7.06913169012395	7.27174214747162	7.0852797028148	1.40694327644137	4.86549393553245e-08	3.79426447411232e-06
Merged-chr6-97486180-4	chr6	97485681	97486681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1639.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.98796816956826	8.02178644188571	7.66432935607813	7.77323259475028	7.96133641199129	7.84424586525224	-0.0629505392979931	0.785361380359833	0.947890183314723
Merged-chr2-130450343-4	chr2	130449832	130450832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	54.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	6.89747255349932	6.44493375931318	6.46935658888964	6.49585792179765	6.35845678535927	6.11407518968426	-0.464631861631295	0.123258625549913	0.469709352633714
Merged-chr19-46008359-2	chr19	46007859	46008859	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152221, intron 1 of 1)	intron (NR_152221, intron 1 of 1)	4881.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	4.45925851625017	4.68794094353612	4.8109362886493	4.86384642637802	4.7369947282858	4.64372487392645	0.23576353633724	0.569468305120304	0.8688875602138
Merged-chr9-90108499-4	chr9	90107993	90108993	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 2 of 12)	PB1|SINE|Alu	6327.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	6.40867698234461	6.2511461442295	6.0487591281638	6.90265756312161	7.20532324613161	6.64346277078898	1.1029088958241	0.000207890508187235	0.00517129748311589
Merged-chr4-141618677-4	chr4	141618162	141619162	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-29.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	4.56417925935926	4.31773731680348	4.01657873345733	4.41703290861777	4.27699180725349	4.14093476561194	-0.112228817619173	0.819399069618367	0.957282869084497
Merged-chr18-67504158-4	chr18	67503657	67504657	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194355, intron 8 of 14)	intron (NM_194355, intron 8 of 14)	39308.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.20499887419232	4.43033466274171	3.98970695265093	3.77871501967206	3.6222270380642	3.74004525702385	-1.60861419622124	0.0024569487034797	0.0362349854163664
Merged-chr7-101374954-1	chr7	101374454	101375454	+	615.0	f1_c57bl6.idr	intron (NM_001040111, intron 3 of 33)	B1_Mus1|SINE|Alu	-3168.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.56102414953711	3.20709991549281	3.43793029521418	3.12674128811458	3.19650300441677	3.61040938628759	-0.338584091781409	0.604574962166457	0.88314896167691
Merged-chr11-83541528-2	chr11	83541028	83542028	+	872.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11010.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	5.61097441608988	5.86545384097703	5.85149018741045	5.47246009901469	5.71031644471412	5.76621530799537	-0.227046580653158	0.482897450930016	0.825867492178998
Merged-chr10-10558239-4	chr10	10557748	10558748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026405)	promoter-TSS (NM_026405)	-41.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	8.38935866342588	8.96175485629087	8.11091847650823	8.08634901781523	8.62212338761287	7.89850864301533	-0.412070001637489	0.190588954343194	0.576988383226797
Merged-chr4-66861902-3	chr4	66861408	66862408	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34357.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.41907948859245	3.39955411222838	3.313427603989	3.28364306455383	3.11507103732053	3.08520603003261	-0.890233195751245	0.158852527922835	0.530664892540681
Merged-chr15-75931382-2	chr15	75930882	75931882	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1564.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	2.9003343091096	2.94260931659045	3.00320932310014	2.91396331361028	2.9558418946569	3.01652465911273	0.0670315540944919	0.920805839249797	0.982463724790289
Merged-chr5-135486651-2	chr5	135486151	135487151	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	RSINE1|SINE|B4	58471.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.09266701973021	4.21019495971209	4.89942100735046	4.55096246452434	4.31453481094521	4.41553841016133	-0.0315096102882841	0.950992260992805	0.988570979482657
Merged-chr10-127583107-2	chr10	127582600	127583600	+	903.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 19 of 88)	intron (NM_008512, intron 19 of 88)	38048.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.58942532510429	3.11393649352606	3.81281594015268	3.42598873077507	3.18236779195921	3.64437745779034	-0.383222403099909	0.570255315166703	0.869107705040498
Merged-chr7-114066914-4	chr7	114066359	114067359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	50922.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.30324579644021	3.15387294996803	3.38552761759589	3.98061635410672	3.66618296740288	3.57433205600628	1.77499412225206	0.00368211136831926	0.0489192276441177
Merged-chr7-4651881-2	chr7	4651381	4652381	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	7069.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	4.03163950576048	4.20725532920234	4.41092700183695	4.1103404098564	3.77494976434832	4.27209473867622	-0.456143937456642	0.376652579158933	0.759336465825071
Merged-chr9-110681348-4	chr9	110680828	110681828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	24825.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.56701412071348	4.12630508129396	4.37148312573024	4.91485931550715	4.93530194845813	4.66036312941418	1.15549884593744	0.00936115922924749	0.0960921955523347
Merged-chr17-27565837-4	chr17	27565340	27566340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002895)	promoter-TSS (NM_001002895)	-113.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	6.84877172775433	7.06571044236563	6.97268745674296	6.70908767388904	6.97654289006735	6.80074598631864	-0.194343034613606	0.446923622265987	0.806159145464037
Merged-chr9-31931415-2	chr9	31930915	31931915	+	907.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-18130.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	3.52032023044552	3.36045363660789	3.2445480939863	2.94747559906933	2.94065362934552	3.07793801674466	-1.79820500363006	0.00797152026211173	0.0858855701113289
Merged-chr16-30388168-3	chr16	30387585	30388585	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 1 of 33)	CpG	445.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	7.39997605503814	7.41876852763432	7.36285021748051	7.68498351431217	7.40670044208659	7.45217827795561	0.183374122780262	0.429022606076191	0.795570481157701
Merged-chr2-166656901-2	chr2	166656401	166657401	+	827.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56931.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.02551730776305	5.13986832418315	4.73403703063264	5.307625174571	4.93165999536116	5.03655389446626	0.235661002486	0.552916840791309	0.861983853430146
Merged-chr8-75108741-4	chr8	75108291	75109291	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-718.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.4681221714665	4.83414276201131	4.94210526243596	4.96609638546829	4.93562799185098	4.66394631154816	0.253071699298018	0.548283839867298	0.859628922276836
Merged-chr2-11490782-3	chr2	11490286	11491286	+	760.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 3 of 14)	ID4|SINE|ID	11304.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.36906103640668	4.77844523314052	4.48143378375627	4.72217966408673	4.69334007634239	4.67493429611389	0.322595802784924	0.452594483388387	0.809456767794566
Merged-chr14-50908385-4	chr14	50907911	50908911	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15156.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.55246945757587	4.47499929052388	4.90586943542497	4.05731580897657	4.00377188659913	4.80620795054307	-0.788906384556207	0.136870562980323	0.494302335263311
Merged-chr7-4793644-2	chr7	4793144	4794144	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009081, intron 3 of 4)	CpG-12617	679.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	6.18218735983338	6.20578007292939	6.41876692407606	6.19595024152672	6.09412900516033	6.21202189190439	-0.169716694226866	0.547375904517283	0.859266262227511
Merged-chr13-34691260-4	chr13	34690759	34691759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38336.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	4.11750520875794	3.91857603026991	3.84875692522436	3.80645096893321	3.66303381008378	3.6489429391664	-0.842020418384248	0.113414619813705	0.449895293929195
Merged-chr2-52950376-4	chr2	52949862	52950862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	92494.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.59605942614242	6.53033244058047	6.1101747907473	6.14364171094121	6.44278435743248	6.12537494193269	-0.30387309285619	0.32073884798775	0.714532129212091
Merged-chr11-115192349-4	chr11	115191863	115192863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	4876.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	7.29508636333671	6.93998298462554	6.71731170657599	7.45111884013986	7.72044298373687	7.52253312038944	0.823837438100289	0.00245902685281586	0.0362527828435688
Merged-chr11-22287164-4	chr11	22286663	22287663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153078)	promoter-TSS (NM_153078)	-368.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	4.85794749764175	4.69529751381285	4.6712001401094	4.86088797700444	4.41723262023671	4.43478962431428	-0.372867971228517	0.391680159157597	0.77069538219803
Merged-chr11-120035823-2	chr11	120035323	120036323	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	ORR1A1|LTR|ERVL-MaLR	5958.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	3.82370754403928	3.70103671243935	4.12226014746118	3.84251564064409	3.57012737478099	4.27106833426662	0.0935088155542826	0.872152447196795	0.970261003150518
Merged-chr3-54357697-3	chr3	54357192	54358192	+	724.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3415.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	4.19311813489167	3.98679561273603	3.86296987744002	4.13174793761501	3.89598814775035	4.34796913626531	0.295294197423184	0.568572778882942	0.868611680411483
Merged-chr4-120952274-4	chr4	120951733	120952733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-532.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	7.4209491421625	7.48972182875651	7.33216659094654	7.09944419740691	7.40610540092899	7.25184002758413	-0.230628845773379	0.334845525258014	0.725198429760335
Merged-chr3-105878072-4	chr3	105877579	105878579	+	937.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	7221.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	4.89546945449544	4.79535389729905	4.84107742754184	4.99524511610149	4.87169818641169	5.2112942934327	0.389768021811988	0.312324999494335	0.707122889610482
Merged-chr1-16162815-2	chr1	16162343	16163343	+	648.5	f0_balb.idr|f1_balb.idr	Intergenic	Lx4A|LINE|L1	56961.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	3.14518440027937	2.99830978309222	3.3842229555075	3.5204607235949	3.22149931377195	3.45522967188209	0.905769119338679	0.162933123570246	0.536350806900858
Merged-chr3-136672000-5	chr3	136671554	136672554	+	853.4799800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	1988.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	6.01331202609584	5.98935670525366	5.96772052509157	5.80080191848738	5.74952428584124	5.93580984152295	-0.296760697107167	0.316292354631915	0.710339942934364
Merged-chr19-32388551-4	chr19	32388056	32389056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	-44.0	NM_144792	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.13836040569689	7.04403465907455	6.713339520822	6.55543898958609	6.47936102622999	6.51281016736007	-0.73939910639732	0.00552134526255285	0.0657159342878697
Merged-chr5-124095360-3	chr5	124094845	124095845	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	453.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	3.56502620589693	3.78460155561953	3.69850774185353	3.42124205791917	3.35637847121798	3.21103719148547	-1.33099901391116	0.0285869740654842	0.202612004943851
Merged-chr8-4335828-4	chr8	4335325	4336325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	10615.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	5.46542363192854	5.33741380737751	5.97253110484936	5.21901927361402	5.47411676324191	5.88427093271781	-0.119622130838858	0.761571790285055	0.941258867861232
Merged-chr19-6236330-4	chr19	6235832	6236832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-492.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	7.19562345148631	7.0649421259739	6.94408416721349	7.14871255944966	7.44766898326411	7.11161735406365	0.264498630867886	0.296810678836466	0.693424948467673
Merged-chr4-120381180-4	chr4	120380683	120381683	+	839.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24098.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	2.9827240407478	2.95683415717325	2.6352224482711	2.91643290680857	2.84380801504788	3.08757701183264	0.371526442923875	0.6214609826784	0.890731481839396
Merged-chr13-101734400-2	chr13	101733900	101734900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	33817.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.23464728070645	4.13269315695603	4.18693849004246	4.58461377302595	4.62731506495566	4.56629975723795	1.06407811811794	0.0152430512508882	0.134145299681006
Merged-chr1-180265665-1	chr1	180265165	180266165	+	728.0	f1_c57bl6.idr	Intergenic	Intergenic	-9365.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.39021935806779	4.07527505779165	4.16455340741025	3.97938726033002	4.26628277976411	3.98718105405661	-0.347992084217745	0.485209427479226	0.827376635767907
Merged-chr11-78550809-4	chr11	78550317	78551317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-82.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	7.13206253881355	7.4210049398249	6.89561084851996	6.93829690226133	7.24618627272265	6.73112271700719	-0.264118151341222	0.360346676266015	0.746569549293925
Merged-chr19-5089192-2	chr19	5088692	5089692	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026553, intron 1 of 7)	intron (NM_026553, intron 1 of 7)	654.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	4.4618557291714	4.18314213518093	4.4347677628129	4.50868366454617	4.41755498452577	4.8760736663815	0.605793148491104	0.185488339336945	0.569615666642943
Merged-chr15-57913612-2	chr15	57913112	57914112	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 1 of 19)	RMER6A|LTR|ERVK	1413.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.4834797775059	5.91155367871887	5.30032076784357	6.87393128148654	7.33476542260948	6.61544078206537	1.59290447007341	0.0424536817852666	0.258213170908409
Merged-chr9-46168934-3	chr9	46168437	46169437	+	954.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 4 of 24)	intron (NM_027498, intron 4 of 24)	-59693.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	2.86965895090325	3.04781786774527	3.03203626348669	2.83627396346902	2.6178568827291	3.1038519634869	-0.594729803394505	0.425716855683845	0.793296041200845
Merged-chr3-101552888-5	chr3	101552446	101553446	+	771.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	51761.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	4.0475220926674	3.97079227361159	4.00188151786116	4.16588357254179	3.96216801749481	4.57576466330654	0.678558485407734	0.186123333512119	0.57061089624098
Merged-chr9-116096903-3	chr9	116096401	116097401	+	815.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	78462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.49637699018531	4.49679629853918	4.69039419225583	4.52377939947779	4.14515695815264	4.68110096516139	-0.254899693218359	0.578779108029683	0.872437129840066
Merged-chr3-65957837-2	chr3	65957337	65958337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019937, exon 1 of 11)	exon (NM_019937, exon 1 of 11)	412.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	9.22500147094961	9.23940879232068	8.75521208109579	8.86226025057387	8.81205745177818	8.61328240493769	-0.452167305263314	0.0524547708980835	0.292871004286904
Merged-chr2-91192703-2	chr2	91192285	91193285	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 2 of 9)	intron (NM_001355279, intron 2 of 9)	2250.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	4.80496247740081	4.85435484981123	5.72288161513303	5.58501555432936	5.8165632940285	5.61006711479884	0.938377503854502	0.0293916364282552	0.206124945957961
Merged-chr6-124930905-4	chr6	124930399	124931399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-489.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	6.84597409125232	6.17350414269357	6.37145083770314	6.67084204608073	6.43918841250293	6.46936677314359	0.0454993668675142	0.884795247283185	0.973538624783452
Merged-chr1-162000014-4	chr1	161999512	162000512	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-4957.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.28568377873104	5.51777249465805	5.28408790284596	5.26657442302592	5.29285984710467	5.07345434771393	-0.298858632255137	0.398541072421354	0.775273667788888
Merged-chr6-33852807-2	chr6	33852307	33853307	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 13 of 17)	L1MD|LINE|L1	-176641.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	2.74384206627283	2.5683089906556	2.91938112125808	2.96797862341245	2.4619532244997	2.62017205919065	-0.243461074666579	0.765230160885692	0.942137701159565
Merged-chr5-138173337-2	chr5	138172837	138173837	+	843.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021392, intron 4 of 14)	RLTR49|LTR|ERVK	1316.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	2.79174570161474	2.6554658922125	2.8534309047139	2.7694574397774	2.84066825329345	2.74199424424858	0.111129723407222	0.878074428851795	0.971816559882595
Merged-chr17-35871605-2	chr17	35871105	35872105	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4990.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	4.60694184989092	4.68332670897623	5.07983413411064	5.00286116161603	5.27336770695149	5.567560038557	1.06578991947986	0.00978580311129882	0.0989857896042976
Merged-chr11-17004323-4	chr11	17003809	17004809	+	880.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	4409.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	8.23499129682361	8.24315993339979	8.11445290184288	7.92385332819373	8.2539721436117	7.87577613679367	-0.231145496870097	0.312400534179853	0.707156602251519
Merged-chr2-18767209-4	chr2	18766723	18767723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6361.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	7.51595351073139	7.52042246953578	7.29187462587727	7.44599815121807	7.6672081157189	7.61975246428153	0.188511027681644	0.418396922909935	0.788591657834186
Merged-chr5-144003015-4	chr5	144002522	144003522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 7 of 14)	intron (NM_177682, intron 7 of 14)	11831.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	5.03786714679357	5.21966237615936	5.48655460012013	5.53552671565459	5.77677769203386	5.6042333509268	0.772119372339797	0.027445493026853	0.19745446785355
Merged-chr13-49201846-3	chr13	49201308	49202308	+	840.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	14218.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	7.57025429574796	7.82809436959756	7.36893229109356	7.55783965059058	7.65749143135353	7.23547933308689	-0.154144957415138	0.554544924032636	0.862848963833192
Merged-chr8-68196200-4	chr8	68195703	68196703	+	910.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80325.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	7.14078089758079	6.91786350776556	6.75487141514114	6.90412676228551	7.18820886337407	7.1740139797914	0.213602320475005	0.416287296502535	0.787183450387086
Merged-chr16-44139775-4	chr16	44139292	44140292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	1.0	NM_001347239	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	9.02484281399283	8.96226871353747	8.52390114447716	8.590575473639	8.89190940130141	8.4360845121594	-0.276856267140224	0.266572958739836	0.664166899200562
Merged-chr2-113447486-3	chr2	113446975	113447975	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	6411.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.56772710228859	4.5056883316412	4.69582183844857	4.17818822545631	4.10868149833417	4.36299300582038	-0.984003703063209	0.0281366339226831	0.20056481071178
Merged-chr19-60226659-4	chr19	60226152	60227152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358271)	promoter-TSS (NM_001358271)	49.0	NR_152391	76539.0	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	6.76388432706936	7.07351950156875	6.80884647698539	6.79848996265345	6.51476620115684	6.79206507110866	-0.299990856423738	0.265176949456255	0.662946357310222
Merged-chr6-65145611-2	chr6	65145111	65146111	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-881.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.59004888068292	6.84216982098257	6.45291945520783	6.11214481085713	6.48376505417296	6.31940794590562	-0.526111600266498	0.0711406362202088	0.349837375442467
Merged-chr2-27676042-2	chr2	27675542	27676542	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.31465516923804	4.85156104199701	4.43059187690401	4.21727257397691	4.36148715083183	4.27104534460653	-0.697636590302281	0.140284284066316	0.500590732849733
Merged-chr1-180849730-4	chr1	180849240	180850240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1411.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	9.07811577796542	9.15922716050503	8.6081613367912	8.82631965778609	9.22804000545674	8.50245087030636	-0.110640055044636	0.689069049371857	0.917288859631611
Merged-chr9-32686678-2	chr9	32686162	32687162	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9380.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.4868032028287	3.59840949107557	3.35665949856939	3.37831224224537	3.12251718306212	3.42862852375682	-0.697355854881411	0.260231660496248	0.657649400461384
Merged-chr1-182341139-4	chr1	182340660	182341660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175127, intron 1 of 4)	CpG	446.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	7.13972453506351	6.54779997696174	6.60823150273008	6.80348519061797	6.30872495493802	6.66744963650681	-0.306026789198209	0.332939745171321	0.723927708416112
Merged-chr17-81706330-4	chr17	81705828	81706828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	32059.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	7.1159267528887	7.31983811838558	6.95731628094113	7.11728330191916	7.47425176124116	6.9123748591622	0.0833938324457559	0.7642201238954	0.941958626520407
Merged-chr7-99108235-2	chr7	99107747	99108747	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	32897.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.69062569995871	3.64193256402101	3.6585939400498	3.4711975602624	3.32600367377476	3.67716341435985	-0.628293857545949	0.275031505695431	0.672401372506524
Merged-chr12-100841404-4	chr12	100840892	100841892	+	909.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361020, exon 6 of 14)	exon (NM_001361020, exon 6 of 14)	58132.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	2.75492225348633	2.83882044804453	2.98129584512445	2.964311222224	2.66913675924085	2.93656922298334	0.00632949487219124	0.993031388000149	0.998646946749805
Merged-chr5-66090250-4	chr5	66089749	66090749	+	834.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	7930.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.94197303683768	5.5788495341484	5.93901536986867	6.13462317413301	6.30887348429058	5.77233976180225	0.483425832791322	0.144823162664413	0.507645438049158
Merged-chr1-183388949-4	chr1	183388453	183389453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277959)	promoter-TSS (NM_001277959)	-32.0	NM_001277959	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	4.79287410539227	4.82028404088272	4.70790990288279	4.42606049931497	4.1051367630545	4.69734014708823	-0.882063222280112	0.0515011564006259	0.289371883434619
Merged-chr5-115521998-4	chr5	115521501	115522501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	L1M5|LINE|L1	15325.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.37840618626123	6.03068923057711	6.44503517283347	6.64342685875651	6.63137348330395	6.55707398278846	0.525738963859942	0.0621115259205233	0.32375968482083
Merged-chr12-3290820-2	chr12	3290320	3291320	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	19149.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	5.01833110148876	5.29024042622238	4.84115107298047	5.48959428032837	5.39187730364755	5.24318724156647	0.617605859047179	0.100103613781113	0.421955278715811
Merged-chr15-27664329-4	chr15	27663828	27664828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	17214.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.27417916712496	7.31211948423415	7.17569336181897	7.25010795161035	7.37751662440879	7.29254107158016	0.0762673687690945	0.740624399000634	0.934617513566659
Merged-chr8-71882778-2	chr8	71882278	71883278	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145624, intron 1 of 3)	intron (NM_145624, intron 1 of 3)	710.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	5.79435768447936	5.81125280347472	5.61860643661168	6.02638492339048	5.99687386135015	5.65296398971974	0.28919537894458	0.362118265422342	0.747675323428227
Merged-chr13-52037462-2	chr13	52036962	52037962	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59279.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.74568208980326	5.24790690026776	5.04831311011045	4.79262435236836	4.81408825280144	4.90143103802704	-0.435736731860356	0.278918398212595	0.676388496108464
Merged-chr11-59505608-2	chr11	59505108	59506108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_135273)	promoter-TSS (NR_135273)	-45.0	NR_135273	74476.0	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	5.47860850525527	5.6233968588499	5.25396564801445	5.11203988337188	5.01706352243411	5.25287450466445	-0.699627199171738	0.0500741836114225	0.284952309529424
Merged-chr16-58510373-2	chr16	58509873	58510873	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13053.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.04128097402028	6.97103171041826	6.80915600795911	6.83110982144763	7.05961688623804	6.74154188461367	-0.0852177103873873	0.741622985940939	0.934887850059998
Merged-chr14-27378567-4	chr14	27378061	27379061	+	981.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17172.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.51412374885418	5.4646663250288	5.72708786285768	5.10154603429088	5.29941510330209	5.3858262256179	-0.585831423192754	0.0900063281181701	0.398830895199526
Merged-chr10-59974278-3	chr10	59973772	59974772	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22502.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	5.39057691689608	5.49350588263765	5.40258241579917	4.78891207492588	4.79843555605053	4.90170944169241	-1.27237170142173	0.000432892403298955	0.00938268067040881
Merged-chr12-100791649-4	chr12	100791145	100792145	+	954.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	12588.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	2.82378580695882	2.98886661348643	2.93517217302513	3.03264790251882	2.82183915748215	3.06681547477753	0.26245150562288	0.705341343300663	0.922756484933722
Merged-chr10-50634391-4	chr10	50633889	50634889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 4 of 41)	L1M4|LINE|L1	41720.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.91367506549762	5.06651837243312	4.86246669741952	5.15717572195112	5.14138121235956	5.07571358705677	0.362153981610769	0.325879874449942	0.718336010416482
Merged-chr17-55891415-2	chr17	55890914	55891914	+	572.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-679.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	5.65255794578973	5.80548815651827	5.52503896106971	5.47954193556752	5.40782596471004	5.23785799453943	-0.545931144568997	0.103212224701898	0.428296315983601
Merged-chr3-96555519-2	chr3	96555094	96556094	+	687.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040409)	TTS (NR_040409)	-2363.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	3.31239697813583	3.35987633467422	3.25677862524619	3.41611674584947	3.21515452823418	3.49530441300446	0.239970999276397	0.694537008266282	0.919210273513843
Merged-chr2-154714142-3	chr2	154713641	154714641	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57115.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	5.3898615168678	5.06292457010231	5.51547619626076	4.65613515867452	4.84930256292369	4.85799042655448	-1.14303180553632	0.0036944803464355	0.0490287592769068
Merged-chr14-20656496-2	chr14	20655996	20656996	+	570.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021508)	promoter-TSS (NM_021508)	44.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	3.81637901138252	3.84746827550925	4.29503509748274	3.9276764673355	3.64129462300588	4.23995741116481	-0.136771608437493	0.808739124829034	0.954721853010197
Merged-chr6-140817575-2	chr6	140817075	140818075	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	190690.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	2.882262076116	2.99805843527745	2.94990603039762	2.9482428436108	2.72780306308416	2.83903840880139	-0.52243835536972	0.458795787351896	0.813236440920954
Merged-chr9-20893574-2	chr9	20893074	20894074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016876)	TTS (NM_016876)	5016.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	3.2284825275631	2.98072850322671	3.60510713943651	3.18726152814321	3.45396609561592	3.42116012351166	0.264921223380248	0.696399307990455	0.919442007192133
Merged-chr4-148087522-4	chr4	148087023	148088023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	541.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	6.87777817135819	7.0188465454284	7.38583569017518	7.24013627574104	7.10130578751408	7.49205517965975	0.266604168446442	0.32947459729618	0.721399184090983
Merged-chr3-103737935-3	chr3	103737424	103738424	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	77.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.63015274753572	3.67434744920838	3.77365036700388	3.85342844832991	3.83937051193681	4.03466555574174	0.701818391321205	0.181273694488468	0.563574431883748
Merged-chr8-39610460-3	chr8	39609972	39610972	+	665.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 7 of 9)	L1MC2|LINE|L1	32206.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.61289514555547	3.92417850317755	3.92574103289967	3.86725888622858	3.68219675439024	4.21525896473609	0.321535609829061	0.563698421718151	0.865992481769395
Merged-chr11-120378782-4	chr11	120378278	120379278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027980)	promoter-TSS (NM_027980)	-32.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	4.60407279660071	4.03669565653554	4.33759395944791	4.12759690714382	4.04985008068522	4.44644190645902	-0.369707378702339	0.464246220567125	0.816235256119365
Merged-chr11-114676028-3	chr11	114675527	114676527	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	559.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	7.23769759030159	7.36182978889036	7.33422545191433	7.44300093999641	7.59357999089891	7.44510409665909	0.277906149513926	0.222589010023634	0.617547053435896
Merged-chr8-70621296-2	chr8	70620798	70621798	+	814.5	f0_balb.idr|f1_balb.idr	TTS (NM_153074)	TTS (NM_153074)	4454.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	4.85345501762803	4.75251200792422	4.71899546641548	4.83610368838459	4.49209268708995	4.74594048956336	-0.202088348620674	0.622563541534307	0.891197759894683
Merged-chr2-52931583-4	chr2	52931080	52932080	+	903.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	ORR1B2|LTR|ERVL-MaLR	73712.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.41675233952913	3.22619120750785	3.33759576541336	3.2664190432218	3.2553472452309	3.29594691256401	-0.230943006811884	0.705137444032218	0.92270290989203
Merged-chr10-119054378-2	chr10	119053878	119054878	+	697.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3879.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	3.76934086780311	3.99206694734875	3.87437948923526	3.78483685224811	3.89194040053656	3.50296781272802	-0.433081060174292	0.437568245926655	0.800043477269664
Merged-chr13-112751975-4	chr13	112751474	112752474	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48803.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.77579560414692	5.8132044917891	5.77139943746856	6.16578386881818	6.23275373525536	6.00717116944956	0.623888146244624	0.03366842502997	0.224244161521952
Merged-chr12-3391078-4	chr12	3390589	3391589	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	25957.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.4269581205692	6.63981829712711	6.07102048123177	7.08499991826975	7.19887397808973	6.34358244802979	0.829018087146006	0.0159806813654726	0.138801725997729
Merged-chr8-71289309-4	chr8	71288815	71289815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	16601.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.86294512676786	7.9393714858933	7.38882730973451	7.66653705095311	8.11852792609321	7.78390788999854	0.165259991646759	0.540073612051931	0.856312908241717
Merged-chr15-90963506-4	chr15	90962982	90963982	+	939.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016705, intron 22 of 32)	GA-rich|Low_complexity|Low_complexity	-65006.0	NR_033583	20738.0	Mm.431547	NR_033583	ENSMUSG00000116210	Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	2.72024466784014	2.60889433188018	2.77964972613078	2.6943794691223	2.32442331083454	2.96868106334591	-0.0654374381433786	0.939129016039538	0.986604659958455
Merged-chr6-5160261-2	chr6	5159761	5160761	+	636.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	33685.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.73102664706372	3.36060015312983	3.42794562678318	3.39270137621895	3.18915653333452	3.38660540001026	-0.761015275206046	0.218736657143696	0.612919338865555
Merged-chr13-37620078-7	chr13	37619567	37620567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205971.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	8.53552483191626	8.47108679274838	8.17299690065498	8.53021829035851	8.62117687530715	7.87020369724447	-0.0219787602788451	0.936311018815713	0.986037792257163
Merged-chr8-76899690-2	chr8	76899185	76900185	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NR_028579, intron 1 of 1)	CpG	936.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	6.97548938071427	6.92593818772267	6.48173702682334	6.61044977085001	6.43971828526485	6.3225708785773	-0.564844283087004	0.0487913868587622	0.280511620215938
Merged-chr10-95297249-3	chr10	95296738	95297738	+	853.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	26471.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	7.13786966542849	7.07796687881724	7.07132507949609	7.05099250052051	7.24356532413361	6.98089625165994	0.0117536440121131	0.961316990070623	0.99051531523293
Merged-chr2-156324375-4	chr2	156323861	156324861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 2 of 12)	intron (NM_027585, intron 2 of 12)	-11657.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	4.62763068970295	4.87448567367921	5.17530167055857	6.18242392369555	6.58429623077118	6.33860463710237	2.82212875329603	3.96221517555379e-15	1.10633557156873e-12
Merged-chr7-36698011-4	chr7	36697529	36698529	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-89.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.78483075193446	3.42518820319555	3.71292223442757	4.32948322393802	3.91991890231602	4.04139192776179	1.44297789316978	0.00984335482861895	0.0993505420402385
Merged-chr4-133095296-2	chr4	133094796	133095796	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35337.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.18535189400289	3.06593032584166	3.29434375156502	3.85743413713308	4.06503107968796	3.91594217378089	3.09922633789093	2.27887030669176e-06	0.000112201325727342
Merged-chr2-160618799-4	chr2	160618304	160619304	+	914.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-27093.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	6.10513954445494	6.53975206141249	6.29017206842423	6.26300018067379	6.45431874214232	5.89130648458906	-0.14835496863692	0.644103054672514	0.900067122451665
Merged-chr8-71295443-2	chr8	71294943	71295943	+	803.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	22729.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.90519104715062	7.06801662913022	6.98121580577981	6.96541656507892	7.35423932249551	7.10527468175466	0.260036440165836	0.308376770154998	0.704469935667044
Merged-chr9-116126713-1	chr9	116126213	116127213	+	775.0	f0_balb.idr	intron (NM_029575, intron 3 of 6)	intron (NM_029575, intron 3 of 6)	48650.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.59352816436506	3.76192004781691	3.52561046700742	3.00336606442277	3.09007058575	3.43409038627552	-1.84322758843167	0.00567937318962247	0.0669930938987959
Merged-chr12-108893402-6	chr12	108892857	108893857	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-146.0	NM_011710	22375.0	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	5.87472299459035	6.26870657545937	6.31361937797968	6.51470225739833	6.57973381994872	6.05149005799182	0.415293767179713	0.19347112376754	0.580622710324226
Merged-chr14-73386795-4	chr14	73386294	73387294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.43247855243115	7.39441130357382	7.17626622880024	7.39221114833427	7.72298969630718	7.42019700685703	0.268241297554363	0.275897790380456	0.673297827984136
Merged-chr17-6777847-2	chr17	6777347	6778347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	B3|SINE|B2	4933.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.61145704426407	5.67460598976737	5.55434253031338	5.43414062187864	5.61610319587089	5.89511814401845	0.0657656694608224	0.843160130293604	0.96330726515818
Merged-chr4-53045928-2	chr4	53045428	53046428	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 38 of 49)	intron (NM_013454, intron 38 of 49)	34048.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.32964063444761	2.49192870984282	2.61243114979434	2.37946920711424	2.19609886114399	2.50190131978142	-0.759871284589961	0.374701440772122	1
Merged-chr2-84358827-4	chr2	84358325	84359325	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 9 of 15)	intron (NM_018782, intron 9 of 15)	66441.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.67323981685415	3.90239218344403	3.9048289075265	3.76806156573024	3.64818117517612	3.77560079497658	-0.330576808258453	0.535160791389053	0.85341621121369
Merged-chr9-96718592-4	chr9	96718105	96719105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	MIRb|SINE|MIR	840.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	6.14942291686475	6.34763222863233	5.92973872809166	6.22557835376624	6.37660975816132	5.77719972101584	0.00514207900826789	0.987516828592712	0.997218304929226
Merged-chr16-22120764-2	chr16	22120264	22121264	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	42535.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	6.69395903960578	6.52345148269012	6.45653302437847	6.82921680284078	7.06522578831273	6.64264698313125	0.473115669952841	0.0836614915641866	0.382783756190083
Merged-chr1-95624512-4	chr1	95624048	95625048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43046.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.43739513964602	6.36176179448598	5.70802794155773	6.18340141979732	6.41791170324688	6.01566227927896	0.00439424810225959	0.98978707826191	0.997611022725407
Merged-chr6-134928741-4	chr6	134928247	134929247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037955)	promoter-TSS (NR_037955)	-345.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	6.65252024044845	6.51687991887282	6.75750109148352	6.75952715074812	6.74562135776003	6.98251795027303	0.29520409279547	0.257381673387196	0.654689847126493
Merged-chr10-21623608-2	chr10	21623108	21624108	+	829.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30463.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	3.76717729104608	4.18204921442101	3.92494255056243	4.0283855993568	3.97206776465168	4.18347731422682	0.247391363631989	0.631701995668112	0.895251011359995
Merged-chr7-116607073-8	chr7	116606569	116607569	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102700.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.30730735351049	4.95982375483294	5.49488924758088	5.39353139589264	5.36954567082977	5.29315426317891	0.186591963320307	0.612030433459841	0.886473391147181
Merged-chr12-55389880-4	chr12	55389373	55390373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	5651.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	5.23365501335503	5.12432492826696	5.3688630209276	5.28795108980345	5.11006997926651	5.85642094719444	0.401913642290011	0.309622254199403	0.705237976716322
Merged-chr17-10856867-3	chr17	10856353	10857353	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	16494.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	4.76573287332704	4.47990650607777	4.57658194739073	4.6000660782346	4.6207640612322	4.76069553329845	0.102297450469448	0.80650103820674	0.954191062388418
Merged-chr7-113172654-3	chr7	113172169	113173169	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30654.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	4.14267050266442	4.11123473671918	4.87308255781357	4.41312956833212	4.03590697801478	4.3547714142776	-0.366609299426334	0.490771077149051	0.830181469396006
Merged-chr14-22739775-3	chr14	22739278	22740278	+	696.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-196980.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.68710596533351	2.61451501089557	2.79818198331701	2.47287897684302	2.8007115015612	2.4963474010249	-0.517908701358552	0.524906276424729	1
Merged-chr5-150601002-4	chr5	150600497	150601497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6472.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	7.21558971551103	7.11311501434203	6.97157415932147	6.77679125100118	7.02254513062686	6.90203859426112	-0.305780148323428	0.221651934232643	0.616470866788024
Merged-chr4-132212269-4	chr4	132211772	132212772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145393)	promoter-TSS (NM_145393)	-16.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	7.4454829170455	7.64821942013928	7.51823792349845	7.71018336214461	7.43866055232713	7.35215550276189	-0.0422789352345112	0.860138961921243	0.967441103100897
Merged-chr8-84974422-4	chr8	84973925	84974925	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011563, exon 6 of 6)	3' UTR (NM_011563, exon 6 of 6)	4323.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	5.90423929927424	6.00262457630169	5.67139041107616	6.22950658737335	6.64041531494895	6.22792905133587	0.870383646432132	0.00563437428819991	0.0666483868264274
Merged-chr18-12144906-3	chr18	12144425	12145425	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 7 of 12)	intron (NM_024182, intron 7 of 12)	16075.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	3.63126461018882	3.7835591326284	3.84158142917454	4.2661585035825	4.03524632756866	3.80636059568951	0.935564859636296	0.0783646635200676	0.369646650917108
Merged-chr10-122038767-3	chr10	122038271	122039271	+	939.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	MLT1J|LTR|ERVL-MaLR	8544.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	2.93782166878684	3.11805894632967	2.97614440700413	2.79495434620401	2.77905574497977	2.92872038845666	-0.904854529502472	0.197552136529669	0.585664005962161
Merged-chr5-143523011-2	chr5	143522511	143523511	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	4982.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	4.0692574273062	4.22945930184712	4.17351505258207	4.62597696341397	4.32425468937823	4.80891543875039	1.12131604074116	0.0169354833872387	0.144530020685678
Merged-chr7-73542435-2	chr7	73541935	73542935	+	691.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081345)	promoter-TSS (NM_001081345)	-689.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	4.99513397309867	5.05926478490932	5.34774477063721	5.05399162103143	4.98092264361588	5.3528638893899	-0.0102881467712018	0.978461739776711	0.995146803081243
Merged-chr15-37135179-2	chr15	37134679	37135679	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97857.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	2.92288887671492	3.18384552891146	3.34125315381064	3.16726849591687	3.40139854697066	3.00303796217676	0.207409416989722	0.765983817171149	0.942315542034148
Merged-chr5-64933611-4	chr5	64933095	64934095	+	860.4541630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-37.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	5.99599305219705	5.71951164313132	5.50196283933419	6.29404497693963	6.10024626356059	6.13772904835549	0.714392814473827	0.0255429555037592	0.189461422852272
Merged-chr15-58264797-4	chr15	58264287	58265287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-49895.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	5.36175677687311	4.79732424246371	5.02356466905662	4.8002681324114	4.8210837384124	4.83136749271526	-0.584690278703812	0.151246962118475	0.518506648409409
Merged-chr10-94568757-2	chr10	94568257	94569257	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6500.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.3154784202071	3.20302049996398	3.39065232879759	3.12868064262723	3.11107161174409	3.24173107166232	-0.603798417717822	0.336522795839619	0.72653508721162
Merged-chr12-111843060-6	chr12	111842526	111843526	+	907.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 7 of 16)	intron (NM_011625, intron 7 of 16)	28856.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	5.91260097552679	5.88023579776957	6.01215184428987	6.02471542733974	6.30654218707206	6.4969394418365	0.602213960011696	0.0458951001391527	0.270743671916244
Merged-chr3-115693682-4	chr3	115693180	115694180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	21375.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.43133267700202	4.437144085039	4.83495365036136	4.44064067166946	4.09897350058968	4.53428031124866	-0.533264829879394	0.25772519939592	0.65512306443868
Merged-chr19-10287596-3	chr19	10287099	10288099	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	MLTR14|LTR|ERV1	17278.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.23941059667122	3.10009310793247	3.26169403447133	3.31117529501742	3.09128640945217	3.21928120101369	0.0323601649922078	0.959323532437236	0.990174309444982
Merged-chr15-59525213-4	chr15	59524639	59525639	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-123515.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.47472011639623	5.28891953007948	5.20994796149552	5.45449132931249	5.14968749822365	4.67916698749683	-0.380974961009456	0.355607820990473	0.742472851181279
Merged-chr9-59565796-4	chr9	59565309	59566309	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010421)	TTS (NM_010421)	-12528.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	3.49129792383869	3.18599842052754	3.61517472950809	3.19856910806637	3.09592529617892	3.37595728644939	-0.861755884275524	0.181480023654541	0.563787133106409
Merged-chr10-53471453-3	chr10	53470960	53471960	+	778.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	47529.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	2.51098848799732	2.58433487237182	2.65747251722667	2.90619409138236	2.67690875966717	2.79436551728048	1.16701370758833	0.123918658299008	0.471145703438149
Merged-chr5-137531911-4	chr5	137531502	137532502	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010312, intron 1 of 9)	intron (NM_010312, intron 1 of 9)	1304.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	5.386292822816	5.61966185395383	6.53802347761593	5.84163140971344	6.03974891270426	6.39117148489238	0.250524772508757	0.703379680815488	0.922108924938678
Merged-chr11-101424306-2	chr11	101423806	101424806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-779.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	5.55490300973219	5.61656659096766	5.77863854538637	5.46691795618657	5.62572294453198	5.63617392753518	-0.126745607991754	0.693855062513585	0.919065250351864
Merged-chr10-51455982-4	chr10	51455477	51456477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24635.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.4723541981083	7.57948884923381	7.39650319016506	7.64132791369003	7.73486607845896	7.48524030753479	0.206942092924738	0.366270884005311	0.751304516610722
Merged-chr14-79550693-2	chr14	79550193	79551193	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	ORR1C2|LTR|ERVL-MaLR	35019.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.27032172813094	5.19459138296648	5.19244111211048	4.94672825491587	4.84302222959718	4.94603097608739	-0.664538924677157	0.0675372294806017	0.339924860308608
Merged-chr6-31220837-3	chr6	31220382	31221382	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	531.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	7.38542669716057	7.46392422278131	7.19773024948698	6.98880838879436	7.07762086888335	7.13159473621709	-0.440992481376521	0.0647310675434855	0.331597775543824
Merged-chr18-79993663-7	chr18	79993205	79994205	+	957.369019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53190.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	6.06251390033728	6.06912561840006	5.97171345737546	6.26570119484297	6.45254871292095	6.21284631049105	0.477355238576708	0.0926793293999028	0.405556752075052
Merged-chr8-26977115-4	chr8	26976618	26977618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101502)	promoter-TSS (NM_001101502)	-218.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	7.68354057852894	7.88645814589352	7.85708638558991	7.76751915040039	7.59328605735805	7.9440909676812	-0.0595505657562251	0.797324620162423	0.95172471395921
Merged-chr5-123058980-3	chr5	123058483	123059483	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11967.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	6.65560433596391	7.03240521673645	6.27383713215332	5.98412115080077	5.87536903182426	6.04470644579181	-1.21722151941239	0.000136345863633122	0.00367749323215067
Merged-chr7-80777256-5	chr7	80776810	80777810	+	957.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	26021.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.59106681728438	5.53891037321201	5.63460712983635	6.20746229595135	6.38873353523309	6.1177360488246	1.17086297386213	9.3272565297127e-05	0.00267344940173729
Merged-chr4-83526375-4	chr4	83525864	83526864	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355549, intron 1 of 24)	intron (NM_001355549, intron 1 of 24)	819.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	5.17999413586235	5.38253095037366	5.23303741782711	5.41557670197165	5.60374826556637	5.04788049479322	0.239072083350232	0.519784362823194	0.846048097455962
Merged-chr5-111178361-2	chr5	111177868	111178868	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152329.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	7.97336071214544	8.35672367468704	8.02199499421948	8.1146279194837	8.1948244337308	7.80443065614494	-0.109709759013813	0.65363269646759	0.903461343339179
Merged-chr1-165663237-2	chr1	165662737	165663737	+	807.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-28696.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.15918080720573	5.9275096446201	6.43372827953791	6.4463911047001	6.07098208301677	6.4756878017376	0.260714404901682	0.408581841777849	0.782163677806636
Merged-chr8-46883437-4	chr8	46882930	46883930	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103457.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.97763289633013	5.26026700083655	5.32708512135825	5.11289720780856	5.38544444834668	5.1341441018354	0.0706095926143644	0.849161563030051	0.964608463945227
Merged-chr10-81355559-2	chr10	81355059	81356059	+	744.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1932.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	4.78108585800908	4.30268332843348	4.73202228638064	4.7195960637816	4.33518415280539	4.56213087920764	-0.181398574842762	0.692416129367068	0.918658098290308
Merged-chr17-71162861-2	chr17	71162361	71163361	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20671.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.87135921628941	3.1328197713002	2.98402228377594	2.95249544449192	2.96882455174268	3.11416945426783	0.0346987251799801	0.959430699548212	0.990200345348868
Merged-chr7-80388790-4	chr7	80388315	80389315	+	864.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-869.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	6.09299644353487	6.25440813052716	6.30055956051686	6.35160104590462	6.52505968094375	6.43573804264871	0.375779685921084	0.172158458766272	0.550749681454482
Merged-chr1-39922870-4	chr1	39922355	39923355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	21942.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	5.12104782800769	4.98391634308236	5.65193242977067	5.42151109303604	5.41447925205287	5.56039143068427	0.381530380223307	0.318070882316024	0.711817713144205
Merged-chr5-105495349-4	chr5	105494856	105495856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24115.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.73704154339289	5.54067480612862	4.99557022260762	4.61684054402207	4.18344470729014	4.23627690625396	-2.51359028497709	7.37353016234675e-08	5.4151517894841e-06
Merged-chr10-70180866-2	chr10	70180366	70181366	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23798.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	3.02319372250569	3.09874431277731	3.23156431729456	3.24468058710942	3.03569819046001	3.35695289713002	0.410800331580886	0.528756740801441	0.850585575598857
Merged-chr19-56756506-3	chr19	56755965	56756965	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34093.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.06630777821032	3.84059697614427	3.97409496561389	3.76123324881692	3.86864928752597	3.73743841991393	-0.524945359793417	0.312911982592375	0.707540429021071
Merged-chr7-105650885-4	chr7	105650396	105651396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153392, intron 2 of 3)	intron (NR_153392, intron 2 of 3)	10451.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	3.14566890557527	3.39666904841292	3.23159837556018	3.37098514879939	3.35476318712226	2.92123542699191	-0.109652239343683	0.875485673552219	0.971052726689041
Merged-chr9-75553875-4	chr9	75553368	75554368	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	5789.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.07373190699726	3.15446702596408	3.08043602203043	3.37164399691691	3.4108249923246	3.59887282824194	1.45595805508205	0.0217539913454521	0.17079695337539
Merged-chr18-4303316-4	chr18	4302809	4303809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49644.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.17154126364611	7.37002077282547	6.61177052963376	7.12859594898024	7.30667857565751	6.96577432726128	0.0672284025074013	0.821898056668674	0.958023303204974
Merged-chr17-69225121-2	chr17	69224621	69225621	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	52085.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	4.56010253755503	4.69033341106018	4.85028943386066	4.90050728194954	4.90461479787783	4.68412618948916	0.329067565935709	0.414790026975402	0.786025990365609
Merged-chr3-142394263-4	chr3	142393752	142394752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1444.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	6.29780187587681	6.34592692270155	6.47065241365029	6.04666609390503	6.48002779423714	6.40475426699173	-0.0678882593395294	0.815674628591212	0.956465653447018
Merged-chr9-61982082-4	chr9	61981596	61982596	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-35297.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.56778664503303	4.53343763837253	4.86208994484337	4.75110345425522	4.43886453553957	4.85667593274039	0.0720091669256642	0.868055167021129	0.969593336687463
Merged-chr12-80785240-4	chr12	80784748	80785748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5284.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	4.38246290996091	4.37511370397937	4.53924193005286	4.43264039173874	4.40090266553554	4.56519085334795	0.086968516326515	0.840552033474003	0.962819298477451
Merged-chr19-11051186-2	chr19	11050686	11051686	+	829.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102366)	promoter-TSS (NR_102366)	-620.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	6.60243564899579	6.58339986810874	6.78163232062321	6.73834407213647	7.15134226945903	7.1692695875586	0.591285058872616	0.0286867486529069	0.203076993526551
Merged-chr6-55054231-3	chr6	55053763	55054763	+	660.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_180678, intron 6 of 16)	intron (NM_180678, intron 6 of 16)	16262.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	3.31993303779507	3.39139313283779	3.54857119882334	4.24427540737419	4.47126651232729	4.48784020678051	3.43642589717544	1.63465551570948e-08	1.40803743427696e-06
Merged-chr7-35586186-4	chr7	35585685	35586685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	-62.0	NM_145633	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	4.01968765927756	4.06362464236897	4.45780768101276	4.30876674550271	3.83393807450454	4.52328393506227	0.156388534784146	0.770487849967937	0.943392092118189
Merged-chr3-19659560-2	chr3	19659060	19660060	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081281, intron 3 of 9)	intron (NM_001081281, intron 3 of 9)	15100.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	3.06708142466079	3.14022212432737	3.81502281330296	2.93840663028957	3.01605047601832	3.14323303194354	-1.42849865471513	0.0493167178264844	0.282282827055521
Merged-chr12-38814144-3	chr12	38813668	38814668	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	30457.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.83463956063078	3.56223072050044	3.39978804512877	3.66060962697754	3.12058591408418	3.58650821959649	-0.490268661403617	0.45340526943634	0.809761744660326
Merged-chr9-100642314-2	chr9	100641822	100642822	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	6.85610425954248	6.90620042568164	6.6009606791947	6.66527386471842	7.09927832703394	6.85232986464666	0.140197505642703	0.610271363407808	0.88548880861851
Merged-chr15-74897834-3	chr15	74897324	74898324	+	778.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16120.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	2.42284479779946	2.53311395130126	2.6327227226721	2.99406555410695	3.00917166886884	3.40198375542709	3.77675768420584	8.03645728915963e-05	0.0023570586468678
Merged-chr10-77289821-2	chr10	77289321	77290321	+	689.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_004429)	TTS (NR_004429)	30521.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	4.39941655002115	4.57568698180706	3.99422059331924	4.50295658506931	4.11375035245872	4.45251166482999	0.0197790075246416	0.968691362970015	0.992817369127793
Merged-chr5-135686626-4	chr5	135686137	135687137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2508.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	6.62063854293379	6.64908471495048	6.6999266276654	6.57560120470139	6.77024455267395	6.21696929234499	-0.156130356689347	0.584852594230956	0.874754719025748
Merged-chr5-122060192-2	chr5	122059692	122060692	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-10341.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	4.22492866675752	4.10210992874741	3.95321481491079	4.06934093087693	4.20720585281629	4.17076237697658	0.132295616120655	0.783636564418412	0.947273157369161
Merged-chr1-23399775-4	chr1	23399254	23400254	+	894.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME2|LINE|L1	-16579.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.53974901108755	4.69485212849227	4.67872817534206	4.49189046415802	4.37509616907079	4.50287724707124	-0.458080059847608	0.276865212223943	0.674219338544581
Merged-chr4-97757451-4	chr4	97756940	97757940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-20186.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.4339627290303	6.43434869110539	6.55744363665025	6.44263654894769	6.55216952967812	6.40199618582343	0.00140256763034916	0.995771793876234	0.998961028701257
Merged-chr11-120930197-3	chr11	120929665	120930665	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 1 of 18)	RLTR33|LTR|ERVK	2707.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.7466153164433	3.71607278346142	3.85099252884299	4.79531836998444	4.63638187537748	4.14206330661136	2.27558333034179	1.24403080764998e-05	0.00048325544091008
Merged-chr5-101995633-4	chr5	101995143	101996143	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	74278.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.68251666124601	4.92529460688268	4.95605948020671	5.46883229509955	5.53935505016809	5.23246951551652	1.18820727402799	0.00135353092044265	0.0228385386833258
Merged-chr19-6968664-2	chr19	6968164	6969164	+	955.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290349, intron 1 of 30)	intron (NM_001290349, intron 1 of 30)	1150.0	NM_008874	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	3.62452803942298	3.64033885037893	3.8859937124014	3.7485408600254	3.60589176563087	3.99971694005797	0.230723549529227	0.676677915657346	0.912549881054299
Merged-chr14-16427796-4	chr14	16427272	16428272	+	970.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 33 of 35)	intron (NM_009409, intron 33 of 35)	62566.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	3.36065586876819	3.44233467762059	3.54368354950362	3.66936946109614	3.39117907111537	3.56097572079976	0.348738941080344	0.549688360151254	0.86042385916162
Merged-chr17-46892708-4	chr17	46892206	46893206	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178385)	TTS (NM_178385)	2085.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	6.59428482878717	6.47286987863952	6.01807114344925	6.1226123425206	6.14359771569937	5.67090284837959	-0.646144714583587	0.0524218936082612	0.292805324787286
Merged-chr17-44105783-4	chr17	44105306	44106306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199016)	promoter-TSS (NM_199016)	2.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	6.75178684449998	6.48497534433682	6.79356979109615	6.95705446050507	6.93625849636498	7.2906787391711	0.595797275349324	0.0271681745008026	0.196308064865786
Merged-chr10-121630438-5	chr10	121630081	121631081	+	862.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4249.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	4.79232457430916	4.77535626168486	4.72339838971305	4.82856787185758	4.66871285233197	5.04062041923091	0.1739320557915	0.664466490996897	0.907585158243155
Merged-chr1-88285065-4	chr1	88284538	88285538	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7459.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.52724554645936	3.69701086740946	3.64868457418057	3.46281856225911	3.43998066032083	3.61471809904983	-0.443933248084147	0.432810859144231	0.797521047015227
Merged-chr10-78411967-2	chr10	78411467	78412467	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	1076.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	4.87509827639071	4.74209455007591	4.89023417420348	4.92772843060771	4.3872684037681	4.80896519974812	-0.263146863366126	0.539169471056721	0.855784546100871
Merged-chr7-128172695-4	chr7	128172191	128173191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	5.23552012835718	5.23112791474405	5.19824114600997	4.94753769357388	4.71780140174909	4.79731147230489	-0.86460308302983	0.0203838122492986	0.163461149109742
Merged-chr16-91354761-4	chr16	91354259	91355259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18024.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.55759332864626	8.52186174853904	8.1100026464282	8.14166657762745	8.59154569200124	8.12263222160973	-0.147875626031557	0.565296962787908	0.866599059240356
Merged-chr9-50463127-2	chr9	50462627	50463627	+	740.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31398.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	5.46377912967388	5.87883308255509	5.87633363727418	5.94343266698549	6.01022406206333	6.31054092910673	0.597802211569745	0.0687796695425026	0.343101021477383
Merged-chr11-3164186-2	chr11	3163687	3164687	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	B2_Mm2|SINE|B2	29276.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.45943116823377	6.95386723915468	7.07535063740029	4.588736887231	4.22794582550344	7.4470550703401	-0.745947387155035	0.6989960832692	0.920515737149593
Merged-chr13-5806884-2	chr13	5806384	5807384	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	51208.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.26287422268004	2.23066125751741	2.66669162112744	2.25996889530556	2.12386998012406	2.50260233898552	-0.610083403606157	0.50053893905706	1
Merged-chr2-129515178-4	chr2	129514687	129515687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	21415.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	7.55168128247875	7.83117044609775	7.24741103060554	7.35448630793138	7.52857608195453	7.19222374524841	-0.295787906927495	0.269200326499576	0.666318254674025
Merged-chr2-167227565-3	chr2	167227046	167228046	+	649.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008968, exon 2 of 10)	exon (NM_008968, exon 2 of 10)	12991.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.44951565964635	3.57361957295244	3.70882913929271	3.58941394550257	3.47067510436398	3.67765931027736	0.000168354093103562	0.999763052967161	0.999955333581252
Merged-chr14-9468061-4	chr14	9467571	9468571	+	857.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-416024.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.46673829557119	4.32219485296404	4.35842217436927	4.14340195836216	3.9738387918389	4.15461158840795	-0.825563260381011	0.0758702315479239	0.362566633737632
Merged-chr13-45963075-3	chr13	45962575	45963575	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	1916.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.44866527937717	6.41823289847752	6.29587774087758	6.57906423798539	6.41361114485202	6.29477906700735	0.0724242854444908	0.791077133693634	0.949694766870106
Merged-chr3-97207310-2	chr3	97206810	97207810	+	732.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 9 of 10)	exon (NM_029933, exon 9 of 10)	20054.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	4.57885921578208	4.4692277077924	4.43671434842808	4.46432873258495	4.67921956500903	4.66896402408717	0.268366330413425	0.525855699707094	0.8492220423215
Merged-chr7-122705997-4	chr7	122705504	122706504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019430, intron 1 of 3)	L1M2|LINE|L1	34260.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	2.97492942612547	2.66648871867455	2.98334328550946	2.9806078060883	2.86180056968989	3.11282609510733	0.496254790773163	0.490903153006344	0.830208116813721
Merged-chr5-139387457-2	chr5	139386957	139387957	+	951.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-2447.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.63334609160615	5.58122521290397	6.11363033453285	5.40142650428076	5.38092546456067	5.8133935272971	-0.463652657870316	0.20135429781738	0.590980190927287
Merged-chr11-4188740-2	chr11	4188240	4189240	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	1907.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	6.89907807762048	6.81838950651429	6.69163293898187	6.59667497763879	6.67254390888021	6.19334260984174	-0.459683832084037	0.102921917205677	0.427792386539026
Merged-chr19-47433558-1	chr19	47433058	47434058	+	829.0	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	30853.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.74698650938472	4.2405344376218	4.23802896354865	5.08904396039844	4.68463003863021	4.75766640894206	0.977980740865701	0.0380790856632598	0.241562401709833
Merged-chr10-13453604-2	chr10	13453104	13454104	+	595.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20792.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.20362835833523	5.55806709374358	4.79563717395029	5.13005733400325	4.86864640466966	4.82190427702023	-0.598604667190153	0.156712266884821	0.527603249158493
Merged-chr1-45838454-1	chr1	45837954	45838954	+	819.5	f0_balb.idr	Intergenic	Intergenic	43288.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	4.51212911031531	4.69686670626958	4.53144060250632	4.20297232894767	4.41294898977537	4.63740044125455	-0.407137844210817	0.359959638490558	0.746219593510366
Merged-chr3-121842398-3	chr3	121841889	121842889	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27087.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	5.38548077669528	5.20568296250238	5.03555096065325	5.68424286694209	5.57086551240918	5.58726433004286	0.748720405494491	0.0301411219591779	0.209569306928189
Merged-chr11-114701890-2	chr11	114701390	114702390	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 5 of 13)	intron (NM_053273, intron 5 of 13)	-25522.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	3.06587299011377	2.92340608426661	3.14820916246674	3.29529440291476	3.0872950413034	3.27670418854931	0.763205404296714	0.244613258632816	0.64198815440115
Merged-chr18-34858933-3	chr18	34858467	34859467	+	690.888916	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2240.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.38490969689658	5.32757945128254	5.05256051080912	6.09399582707109	5.99123816485877	5.73579854846649	1.25910215903087	0.000230195580038842	0.00561210484145091
Merged-chr4-86885850-2	chr4	86885371	86886371	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	11457.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.3818504823142	3.35154750998048	3.33246914610519	3.69575766276154	3.25639767771042	3.62386197948121	0.663321990285316	0.27942431877153	0.677122017542053
Merged-chr7-16400188-4	chr7	16399698	16400698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-998.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	8.77099433974046	9.00380617826346	8.59217234474869	8.75388730122775	8.90051658941757	8.61075951897578	-0.0560246869108533	0.803051313796356	0.953422605427866
Merged-chr3-69156159-4	chr3	69155655	69156655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	B4A|SINE|B4	24922.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	7.74575310318015	8.03968670170605	7.55709843315764	8.07781974798251	8.35812661635685	7.84709324973437	0.447575766080109	0.0868469571528285	0.390487496529372
Merged-chr11-29308324-4	chr11	29307815	29308815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-61043.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	3.24919776766278	3.078137056459	3.45032071552629	3.03884122111578	2.9898022404237	3.2569657009089	-0.719425108244375	0.279387531808842	0.677052590480839
Merged-chr15-26360527-4	chr15	26360040	26361040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51492.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	5.32348273876385	5.18577074949218	4.95649472161733	5.20074088928227	5.16705409102171	5.35982339485198	0.130439894077169	0.720879729292052	0.928324696220711
Merged-chr15-73149796-4	chr15	73149299	73150299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	35148.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	7.02305866553134	6.89612559776988	6.6694669160707	7.20894259203891	7.34032009449143	6.92035200900924	0.45294264945393	0.089863483992966	0.398367649232111
Merged-chr18-23872106-2	chr18	23871606	23872606	+	672.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	68136.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.47104403208525	6.46003582276914	6.32142163521953	6.35896735200621	6.70625214766703	6.49524314067712	0.179973303000577	0.515192346219149	0.843376573195867
Merged-chr4-139228710-1	chr4	139228210	139229210	+	937.0	f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	34599.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.36268758938856	5.96027769965074	6.232107954307	6.3717105169443	6.30176540516213	6.33184651477319	0.233663984191143	0.420889495976386	0.789961725604022
Merged-chr5-148494359-2	chr5	148493819	148494819	+	849.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57354.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.94412548939065	6.13061326970038	6.01965531394544	5.80406223616536	5.63852408623853	5.74056235255587	-0.549860774232473	0.0685660304286644	0.342492631763015
Merged-chr17-15751424-1	chr17	15750924	15751924	+	605.0	f1_balb.idr	intron (NM_007690, intron 22 of 35)	B2_Mm1t|SINE|B2	46457.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	2.73049048705515	2.8564732016224	3.08575209433047	2.79035336138001	3.12142000709915	2.92531984066478	0.299764121744599	0.681190005127834	0.914599647187446
Merged-chr13-21752209-2	chr13	21751709	21752709	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1656.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	3.45122121810686	3.71497508409427	3.56496605511452	4.06191419483639	4.07186595003662	4.09995913058485	1.58840533906458	0.00349679259606309	0.0471268413238123
Merged-chr14-25858147-3	chr14	25857658	25858658	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	16003.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	4.69014579872066	4.56055802577357	4.50949626761749	4.59170822258133	4.33125927516374	4.49114696037072	-0.302635442969985	0.480818363026138	0.824837835037912
Merged-chr11-51367489-4	chr11	51366997	51367997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	MLT1C|LTR|ERVL-MaLR	77577.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	4.19500342468385	4.09074636377883	3.78266034128815	4.45847103076634	3.85482024307619	3.85649981710903	0.152075601781431	0.787073445521132	0.948693859994902
Merged-chr6-72099460-3	chr6	72098953	72099953	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1845.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	6.32088235447471	7.11669671640843	6.51673779622489	6.95100142263509	6.9956833505129	6.38005744665868	0.163377843840139	0.637265023081161	0.897338937840938
Merged-chr16-44812689-3	chr16	44812242	44813242	+	757.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7986.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	6.36801668006565	6.95525489193415	6.15268000554228	6.646026714042	6.92226823805243	6.14292309003724	0.111897770331088	0.75858093461296	0.940237180588619
Merged-chr17-46524231-4	chr17	46523743	46524743	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 16 of 40)	intron (NM_001081335, intron 16 of 40)	22145.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	6.39553041455622	6.37582810669667	6.61776217902897	6.29603754219153	6.61125872942761	6.93442627413275	0.275630241788988	0.35779498798716	0.744340959582859
Merged-chr4-155735478-2	chr4	155734978	155735978	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101506, exon 2 of 4)	exon (NM_001101506, exon 2 of 4)	674.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	6.16367923303269	6.03345357005804	6.27021023248686	5.96722618527047	5.75713466018105	6.04325718441201	-0.406941185875555	0.173760725977405	0.552982578104794
Merged-chr16-77038372-2	chr16	77037872	77038872	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	24303.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	4.13799956889669	4.08058559934295	4.0505696265899	4.40981002728391	3.98480375216811	4.47349911003085	0.567418437885751	0.252012001101179	0.64958999373089
Merged-chr13-74022950-2	chr13	74022450	74023450	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	13531.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.4418285836827	3.17301292864508	3.13386504829161	3.15434546256504	3.25246085138532	3.43386807203684	0.0799272870280832	0.901082987418828	0.977068600768154
Merged-chr2-164460909-4	chr2	164460441	164461441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025575)	promoter-TSS (NM_025575)	-30.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	6.81155329904678	6.95470070779923	6.91193872527643	6.81223710739227	6.65362234198799	6.68337941469142	-0.274302843934723	0.27307537617531	0.670306681833596
Merged-chr14-31386251-4	chr14	31385744	31386744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	31433.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	8.0296449709707	8.0157119559396	7.73077492481436	7.83063562497686	8.24354210965456	7.62617371030755	-0.000183547708642439	0.999443406582623	0.999920050950963
Merged-chr2-128758338-1	chr2	128757838	128758838	+	595.0	f1_balb.idr	intron (NM_008587, intron 6 of 18)	B3A|SINE|B2	59423.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.71517010243789	4.03035145316025	3.93524483087001	3.91127775591394	3.71604743709953	4.00386336528564	-0.0797261048797684	0.880191900922165	0.972457465737931
Merged-chr12-16879930-4	chr12	16879430	16880430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15048.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.04829455583464	5.89336397140658	5.89715369891253	5.14687618720861	5.33187997651308	5.39410997496111	-1.22836846162362	0.000163829014103493	0.00426355339680524
Merged-chr11-35839253-3	chr11	35838797	35839797	+	703.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170779, intron 22 of 22)	intron (NM_170779, intron 22 of 22)	-4769.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	3.33432796668532	3.78521610275005	3.54668250524225	3.4941237778188	3.50241467980445	3.33216136007498	-0.446006532764037	0.464923502652931	0.816631332252401
Merged-chr1-184535163-2	chr1	184534663	184535663	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	22528.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.48536867831941	6.26861993186341	6.15430896940968	5.57425194364517	5.88375787075817	6.13033251470782	-0.752452672657295	0.0184398646174866	0.153128169170841
Merged-chr6-148399162-1	chr6	148398662	148399662	+	549.0	f1_balb.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	44506.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	2.83027603912724	2.85809512456356	3.04438135375112	2.99602580761452	3.01628761419854	3.28113781140463	0.880687144408746	0.20055069534316	0.589640728529511
Merged-chr6-113531625-4	chr6	113531123	113532123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175101)	promoter-TSS (NM_175101)	15.0	NM_175101	66087.0	Mm.275989	NM_175101	ENSMUSG00000030286	Emc3	0610039A15Rik|AI225901|AW260416|Pob|Tmem111	ER membrane protein complex subunit 3	protein-coding	7.01181052945933	7.58737705197061	7.07984117463456	7.39688908595727	7.57559602174943	7.1377933460251	0.190300023158151	0.506554563752183	0.838470324751826
Merged-chr16-35981704-4	chr16	35981189	35982189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-1674.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	3.37898624992395	3.46180086041933	3.20960588675925	3.38833008569183	3.36131944555269	3.34149241361632	0.0137718333619789	0.981908564951477	0.995857371200016
Merged-chr9-120037759-6	chr9	120037406	120038406	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14308.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	4.70960215553505	4.64841060425757	4.89082633013063	4.64879983592355	4.79647162126555	4.61187327520727	-0.116508361473958	0.774716933298745	0.944493464665915
Merged-chr2-25211426-4	chr2	25210927	25211927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021393)	promoter-TSS (NM_021393)	62.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	5.50201344013513	5.90570009421762	6.07871615671781	5.89115829754643	5.8225356401554	5.77019791708006	-0.0211522412524007	0.949250725857486	0.988169196639905
Merged-chr12-16869618-3	chr12	16869069	16870069	+	892.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25409.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.61088418070708	5.73884457185817	5.98265928069738	5.21286955957082	5.00974626705859	5.42864832561123	-1.08736196174384	0.00212962165014775	0.0323931080592999
Merged-chr6-113626226-2	chr6	113625726	113626726	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 1 of 2)	B3|SINE|B2	2205.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	2.81253785436388	2.7059554220115	2.93362173236694	2.79054943625362	2.73932572949039	2.82779844668277	-0.164114427881132	0.818839799488451	0.957113265565834
Merged-chr4-53147709-2	chr4	53147209	53148209	+	827.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	12186.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.72935029905877	4.4330644196586	4.65186237772871	4.6489464191846	4.2878970921458	4.99843970608176	0.133984773496231	0.774005805610426	0.94425470583833
Merged-chr7-102230220-3	chr7	102229725	102230725	+	939.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	7197.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	5.52296879771547	5.27846966211251	5.20373168586923	5.41876221712045	5.63387512372281	6.02962101067997	0.682085205185651	0.062965990723342	0.326475209129352
Merged-chr11-78263390-3	chr11	78262910	78263910	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 2 of 38)	intron (NM_001002004, intron 2 of 38)	1656.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	5.60131318168099	5.53912513422223	5.71511389367618	5.34712686588318	5.55925546796195	5.72638111807094	-0.12656391574716	0.702505470170457	0.921908665861083
Merged-chr6-52713721-4	chr6	52713171	52714171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025816)	promoter-TSS (NM_025816)	-58.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	8.29934954056519	8.74156007856844	8.40176184199125	8.39789275899022	8.58230242336077	8.6417836064346	0.0628434215239829	0.786379180530511	0.948483724840008
Merged-chr7-63913274-2	chr7	63912774	63913774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	RMER17C|LTR|ERVK	-3583.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.77579357280182	6.7155220088423	6.8360446391958	6.79595650708011	7.07730797871086	6.97859657668263	0.287128292851593	0.255065349183891	0.652046992991896
Merged-chr15-83023816-2	chr15	83023312	83024312	+	583.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271414)	promoter-TSS (NM_001271414)	-674.0	NM_001271414	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.16076100118026	3.8834265102424	4.67841730159755	5.04804182926272	4.93288710335081	4.54213740926762	1.43707595107722	0.00499470421723469	0.0611715261271216
Merged-chr13-58449082-2	chr13	58448582	58449582	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-45739.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.12065433861899	4.28642511388843	4.05656845333933	4.28368686917076	4.07857994165636	3.91883647120341	-0.159264826843131	0.746733739728888	0.936306279522028
Merged-chr12-69582344-2	chr12	69581840	69582840	+	721.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033236, exon 3 of 6)	exon (NM_001033236, exon 3 of 6)	688.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	6.19256614040317	6.41736155161944	6.05220074064674	5.08630652710385	5.11197659448919	4.90416080395258	-2.22525882987755	1.77825110630024e-10	2.24870392177858e-08
Merged-chr13-60716569-2	chr13	60716069	60717069	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	69795.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.38666923655967	3.43468824941557	3.70890795969758	3.19379148299264	3.28434753353925	3.68197779627219	-0.43043810299871	0.495193917803594	0.832371001962164
Merged-chr11-54439173-3	chr11	54438643	54439643	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	964.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	8.68883813845806	8.76627565248994	8.0655513254826	8.56857748518294	8.82752814641862	8.11348563386752	-0.00907505067009941	0.975351119211206	0.994454548709104
Merged-chr7-80078081-3	chr7	80077527	80078527	+	911.8777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-2770.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.48207954680291	5.81224380803244	5.87134208100141	5.3812998776806	5.76761303868495	6.2006922534068	0.161572002949188	0.665818698675464	0.907920503949149
Merged-chr13-9107559-4	chr13	9107067	9108067	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	13686.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.4693973020028	4.28550811951472	4.31045298852213	4.5286643503973	4.58324322464888	4.37879928748826	0.374333259169232	0.393940001035312	0.772014404629083
Merged-chr8-35111452-2	chr8	35110949	35111949	+	637.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145759.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.12899179466255	3.29682459538318	3.17424380811588	3.02125194965788	2.75146118348326	3.18936184326591	-0.951863113870692	0.178175899234187	0.559276830911593
Merged-chr13-59768778-2	chr13	59768278	59769278	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 1 of 3)	intron (NM_026921, intron 1 of 3)	1011.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	4.41252513615845	4.50802802337937	4.0990227389636	4.35905840341424	4.43493851890841	4.17000971324919	-0.0731922171618715	0.87704677344309	0.971489168500291
Merged-chr11-106704858-1	chr11	106704358	106705358	+	763.0	f0_balb.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	10423.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.75882305363986	4.80247256874866	4.51517698251879	4.7932695834262	4.79746062690075	4.79084691650664	0.196775426829992	0.625535068513297	0.892513881101067
Merged-chr17-33719542-2	chr17	33719040	33720040	+	865.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-863.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	4.49513610633955	4.70737729432808	4.92094118450436	4.87870831727193	4.87093084347787	4.72641160164153	0.281131621168152	0.493301680568589	0.831208279358962
Merged-chr19-11777025-2	chr19	11776525	11777525	+	607.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_152220)	TTS (NM_152220)	6610.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	2.525012391925	2.48343536196013	2.60594928965229	2.5731030900767	2.28702348970962	2.42337830246871	-0.65020225612482	0.42823899377292	1
Merged-chr12-31944031-4	chr12	31943525	31944525	+	845.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	6220.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.08881441652047	3.84166330977129	4.07193581044906	4.18297579254099	4.25542213017513	4.4449309712444	0.82345636984652	0.0891684934319306	0.396719990642918
Merged-chr16-94615297-2	chr16	94614797	94615797	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	MTD|LTR|ERVL-MaLR	3878.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.31617086600497	4.87387997950206	5.15662209930044	5.0834895092367	5.05387327569784	4.86145553715454	-0.249326499851686	0.521221996363572	0.84693755135567
Merged-chr11-69558849-4	chr11	69558356	69559356	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007911, intron 1 of 4)	intron (NM_007911, intron 1 of 4)	1381.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	4.26151711424257	4.09522577342503	4.36014331527606	4.07122414669106	3.97874334403491	4.30091362570643	-0.347564828569693	0.471205483201174	0.819888573544447
Merged-chr12-86799039-4	chr12	86798505	86799505	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64636.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	3.18294006321255	2.91312160225981	2.88046580364427	2.95626246642381	2.77451495554525	3.01545652675197	-0.418833761102791	0.555561290169692	0.863289501518253
Merged-chr6-145291555-4	chr6	145291058	145292058	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41006.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	5.38536781890007	5.88688563509509	5.83269224218968	5.4523914068039	5.73797108662353	5.46509667736134	-0.278942809278745	0.430702790461675	0.796522076517126
Merged-chr18-46521660-2	chr18	46521160	46522160	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	B1_Mus2|SINE|Alu	4311.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	4.80534061856331	4.72554589262985	4.6533641205095	5.08244382842162	4.9846529190842	5.12723094250264	0.72235241883386	0.0594273262596078	0.315646860015662
Merged-chr18-76930042-4	chr18	76929535	76930535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	8.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	6.8149506185178	7.08915435080158	7.06386883678038	7.23024169856687	7.0576998513501	7.18358666117702	0.247285249175459	0.318705758494313	0.712681234958205
Merged-chr7-30588910-4	chr7	30588409	30589409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	-183.0	NM_029274	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	6.73321336998906	6.80341310216196	7.03685562045897	7.00341754665312	6.42041311202797	6.7779667270445	-0.166463429589851	0.566576641513715	0.867489358488789
Merged-chr19-41304873-1	chr19	41304373	41305373	+	646.0	f1_balb.idr	intron (NM_031376, intron 9 of 16)	intron (NM_031376, intron 9 of 16)	-40869.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.95256560988914	2.84454664133922	3.02569586257432	3.02122088442284	2.95208814317334	3.09759425822026	0.385725860330107	0.567644498388811	0.868226421552338
Merged-chr8-120116292-4	chr8	120115818	120116818	+	893.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	2166.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	4.53128302127699	4.7907022230901	4.44778294068931	4.40379490235421	4.48938997743223	4.33302312028019	-0.472625970201021	0.282960324245584	0.680911639187533
Merged-chr4-126101859-1	chr4	126101359	126102359	+	753.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-2098.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.62852594177844	4.64831679449219	4.59790982250714	3.99650385486608	3.95175411616687	4.33369259293176	-1.44040149368432	0.00201105873075621	0.0310975980057169
Merged-chr4-128733706-4	chr4	128733216	128734216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6145.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.30855062513433	7.35239518363313	7.16101830361065	6.9291612873379	7.19749944179286	6.87677263105475	-0.393533474523806	0.116244025254175	0.455184041746154
Merged-chr3-52634555-4	chr3	52634074	52635074	+	979.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105150.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	3.2148251164755	3.51176569305789	3.30791811071608	3.20622975251229	3.32307665130331	3.43455915539238	-0.127504510968721	0.837402498340503	0.962133986386607
Merged-chr15-53137555-4	chr15	53137036	53138036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	L2c|LINE|L2	208647.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.77560656459237	4.01254440039933	3.9147508658744	3.65020742132293	3.17374757147983	3.45473941859202	-1.66147922123498	0.00696499800829826	0.0778224189975134
Merged-chr8-82992294-3	chr8	82991786	82992786	+	695.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	128930.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.46120056765125	3.58808150503625	3.47487207742704	4.01087059072503	4.06696162676965	4.16176138584996	1.87108782138353	0.000681465832235215	0.0134114023104607
Merged-chr1-161482392-4	chr1	161481871	161482871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12286.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.15778517288061	3.83432442437836	3.96764469369997	3.71562114951051	3.7864913746576	3.7300224930005	-0.782120048811717	0.138532441077604	0.497422398722197
Merged-chr2-121447987-2	chr2	121447487	121448487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1211.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	6.35603508288943	6.62028196769558	6.5778804689743	5.97556972381177	6.22073349053409	6.19324412384126	-0.636585397245348	0.0254865671226313	0.189279578594091
Merged-chr15-38528103-4	chr15	38527585	38528585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-8819.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	3.72067214894861	3.72881495749169	3.92638668483273	3.71510896921856	3.96272631800072	3.79772265727422	0.149109144260108	0.778775225163488	0.945520893795831
Merged-chr5-122650069-2	chr5	122649569	122650569	+	629.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-355.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	3.73284703177487	3.81244506050144	3.55108814625829	3.45795529484439	3.07342727644035	3.39580830384037	-1.49920652641553	0.0176753283323987	0.148816855055354
Merged-chr15-27703780-2	chr15	27703280	27704280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22238.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.7853765058541	5.82083562791217	5.86789756395546	5.68194146717793	5.78543164974968	5.83211650718953	-0.101587539461231	0.73737545425406	0.933692850573981
Merged-chr7-38071229-3	chr7	38070726	38071726	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36264.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	3.26549486918122	3.36689371001971	3.28490732191606	2.98805844959822	3.15869014662294	2.93329347505001	-1.16688109654301	0.0850521502562489	0.386215854536234
Merged-chr6-28261971-4	chr6	28261448	28262448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-347.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	7.84668579983713	7.19570254218542	7.77223844631902	7.74151344670702	7.26825971679759	7.30515672588736	-0.257926020707141	0.379564289048666	0.761960372847995
Merged-chr17-3157557-3	chr17	3157073	3158073	+	827.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	42601.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	4.17542506223511	4.07137263603132	4.59414704691182	3.97321751706574	3.8908185383609	4.13690513906349	-0.827169186093668	0.104231976672948	0.430610908842793
Merged-chr8-46804281-4	chr8	46803775	46804775	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	64530.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.76249112596	4.61338304429909	4.48209917482228	4.64826773276355	4.20714380254561	5.02903263257043	0.0804340129351624	0.867560338322549	0.969369276224236
Merged-chr9-100505972-3	chr9	100505541	100506541	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	815.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	7.66523833614343	7.86398478947141	7.63205975198136	7.8764292631087	7.97529435953708	7.64099430478305	0.168462981779408	0.469533867635651	0.818977178978635
Merged-chr7-121985656-2	chr7	121985156	121986156	+	864.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	3.72565483683788	3.82321788871034	3.83490542356507	3.92743574976811	3.82996727894656	3.74911539573032	0.148533320045831	0.775061609230332	0.944529134174156
Merged-chr3-79520123-4	chr3	79519649	79520649	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	47530.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.05985746214857	3.83505334357391	3.76952509356894	3.79280024483454	3.89879270844723	3.84017032547558	-0.165393088206013	0.751399457163919	0.937886504040509
Merged-chr3-127803019-2	chr3	127802517	127803517	+	747.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	12360.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.02063717389495	3.96469682136478	3.94574026384508	4.12214374987601	3.94613675114587	3.80679133993419	-0.0293111268420738	0.953696633600991	0.989446911725587
Merged-chr4-155179230-4	chr4	155178752	155179752	+	692.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	43283.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	6.08688932380737	5.61243991639989	5.28057418414597	5.52819166600677	5.19698809894739	5.77516131810443	-0.384591829935503	0.340724326721707	0.730413236580183
Merged-chr19-34195531-2	chr19	34195031	34196031	+	905.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	URR1A|DNA|hAT-Charlie	2597.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.77676556828561	5.77422410361373	5.7178226908987	6.16722159002856	6.31591729924685	6.03147063765224	0.742667367772118	0.0123348736511087	0.116433371158418
Merged-chr11-71230889-3	chr11	71230405	71231405	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040696)	promoter-TSS (NM_001040696)	-172.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	3.38226168837164	3.33500068390897	3.68526504796208	5.22340902106621	5.22222919436199	5.16495053715535	8.49596131438959	4.31518100808471e-12	7.43390437517003e-10
Merged-chr1-174354857-4	chr1	174354333	174355333	+	837.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14086.0	NM_207137	258238.0	Mm.377274	NM_207137	ENSMUSG00000066672	Olfr417	GA_x5J8B7W3B3M-312879-313274|GA_x6K02T2P20D-20787051-20786119|MOR267-11	olfactory receptor 417	protein-coding	2.64724374278	2.63484031468805	2.61175827608038	2.60834323880536	2.55634304805681	2.74664579733099	0.014495089075825	0.98463603161878	1
Merged-chr17-35813333-4	chr17	35812823	35813823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8390.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	6.65540206183185	6.32279444978565	6.51627746745941	6.50201041769711	6.46204995593332	6.24878886296314	-0.144298935847021	0.607194894056498	0.884448083779426
Merged-chr5-108312736-4	chr5	108312211	108313211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081234)	promoter-TSS (NM_001081234)	-214.0	NM_001081234	433931.0	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	7.2760156666846	7.68375734337282	7.66809714936702	7.55261643639761	7.53533288365227	7.62588888007706	0.0232243438085214	0.923954427328567	0.982833948467092
Merged-chr8-20557767-3	chr8	20557307	20558307	+	984.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-57120.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	2.46516942538596	2.44134914782244	2.56337412815433	2.95241335675553	3.12147248544886	2.90016166990744	3.2432886609698	0.000266918700945877	0.00633840504232436
Merged-chr11-20533410-4	chr11	20532917	20533917	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9836.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	6.746101693745	6.9508554492748	6.71354901723529	6.93415210872597	7.26967164919118	7.07614061680485	0.448010754554872	0.0839710556861595	0.383588449164643
Merged-chr12-100200222-5	chr12	100199724	100200724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313934)	promoter-TSS (NM_001313934)	80.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	7.89180418343194	7.88144923949522	7.76450247048236	8.00649717917653	7.84839253738906	7.89531340940249	0.0964734569140414	0.652883088540566	0.903027303548785
Merged-chr13-41019161-4	chr13	41018662	41019662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2912.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	6.49880171517969	6.35681153696766	6.5542044613821	6.42811731923299	6.92193471295257	6.75763651190855	0.407066496326288	0.151226633355554	0.518506648409409
Merged-chr16-8829303-2	chr16	8828803	8829803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-797.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	8.36882299320563	8.75048916159321	8.32325194460691	8.33646250622844	8.6641638939801	8.46074023003894	-0.00433371966007996	0.985467241268119	0.996904015210561
Merged-chr11-5780326-8	chr11	5779837	5780837	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015577, exon 5 of 7)	non-coding (NR_015577, exon 5 of 7)	-8146.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	6.38973006076743	6.6011106167611	6.14490891093117	5.66637955201567	5.82516244008681	5.74050911450549	-1.11854556423552	0.000266166754524945	0.00632596495587306
Merged-chr9-47588532-3	chr9	47588058	47589058	+	903.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	58206.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.53089867893101	6.48034516389844	6.2143047419134	4.58762507297052	4.2195490051378	4.47633785036214	-4.33303856400318	7.79113238823978e-24	1.05286701650964e-20
Merged-chr1-181210154-2	chr1	181209654	181210654	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1824.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.60017919451181	6.30472253172258	6.33077298911351	6.83128172969888	6.81662335307816	6.64791814685944	0.554737159607785	0.0401968875547537	0.249660567265503
Merged-chr9-40807039-4	chr9	40806543	40807543	+	902.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5770.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.10881586596761	7.13525481764116	6.67882287373483	7.2331624764614	7.62635327403874	6.70287434761413	0.386212578193892	0.23508788058314	0.631291304704121
Merged-chr3-148221638-3	chr3	148221127	148222127	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	733008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.31133923684738	3.97828480724973	3.59399818213826	3.41952342218063	3.26987129166357	3.22230542085778	-2.52843856216134	0.000144552053590452	0.0038513888168922
Merged-chr4-132383128-2	chr4	132382628	132383628	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-29442.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	4.97404631301481	4.87128628199799	5.00140397040276	4.88958525387685	4.85830975160948	5.1639373239968	0.0437891586684216	0.908834850257598	0.979322837905622
Merged-chr13-105039862-1	chr13	105039362	105040362	+	607.0	f0_balb.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	15068.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	2.15633685627901	2.21942455775828	2.32695253879556	2.25715294129948	2.02692634366804	1.99579721196717	-0.989810689272228	0.292494830758206	1
Merged-chr1-58743551-4	chr1	58743052	58744052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	13000.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	8.09358764222257	8.15410203113643	7.83686374161675	8.03839234805365	8.08827640179434	7.8074522821907	-0.0736550532313665	0.748191147964529	0.936880860325556
Merged-chr17-80290176-4	chr17	80289685	80290685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-27.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	5.20188573362684	5.38194978215277	5.36115675657408	5.27460926734294	5.0176082051392	5.33407245655316	-0.223566817999438	0.532156900076149	0.851971173271146
Merged-chr19-17335048-4	chr19	17334572	17335572	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	4433.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.45422370226395	5.34091616332372	5.49443351076714	6.50810197781259	6.68145820592055	6.7134153207615	2.09530874808191	1.43179874630593e-12	2.68326824510414e-10
Merged-chr15-8279489-3	chr15	8279019	8280019	+	767.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110413.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	2.14112021737043	2.1958302765342	2.28510891998203	2.44899476711921	2.44365653181933	2.49026819317578	1.7867789164639	0.0406080635801827	1
Merged-chr13-97203298-3	chr13	97202803	97203803	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4946.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	3.19808244790155	3.1726767030875	3.38547340294932	3.32794602229821	3.22472214385319	3.04970030942907	-0.167653579666609	0.794186702455748	0.950612113381219
Merged-chr15-66746583-4	chr15	66746077	66747077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	75807.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	6.63387372978008	6.5731431620271	6.51592094883555	6.04268823730115	6.33293261988711	6.35624010065584	-0.53215734747228	0.0546688449992894	0.300282981555977
Merged-chr6-142757704-4	chr6	142757209	142758209	+	880.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	1023.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	6.33290074351789	6.60797580754221	6.03645235392997	6.06049474428207	6.42002838092368	6.1213384412419	-0.230254856986947	0.467801516764381	0.81815434317961
Merged-chr5-122131298-4	chr5	122130800	122131800	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3593.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	6.48707960241857	6.39039640773204	5.91136665953592	6.45032319787437	6.47177765404058	5.86560601366581	0.0102466895035653	0.976035581234282	0.994572735300192
Merged-chr2-155584370-3	chr2	155583896	155584896	+	874.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291111, intron 1 of 11)	ID_B1|SINE|B4	8414.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	3.63506795138767	3.62291259505781	3.81597412037417	3.65431270522295	3.76931014064066	3.83587987667874	0.219068527471879	0.683559510279196	0.915479407206029
Merged-chr15-73621633-2	chr15	73621133	73622133	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	B3|SINE|B2	3111.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.82697294766225	7.19145730068645	7.38433821265391	7.23231981349172	7.4846084882871	7.50139697448985	0.391839841231251	0.144085983877708	0.506710013959755
Merged-chr9-90244077-2	chr9	90243577	90244577	+	665.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26692.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.04494970347179	5.84245371563988	5.73975370254272	6.32557794122414	6.1200445466436	5.98253594997384	0.457351826651194	0.136101026719092	0.492999618268348
Merged-chr3-107113851-1	chr3	107113351	107114351	+	563.0	f1_balb.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	12284.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.9039565910372	3.78440165915318	3.9683059804263	3.87311725498445	3.97586217576582	4.08308821678211	0.287339673645269	0.569061775055122	0.8688875602138
Merged-chr19-5944380-4	chr19	5943882	5944882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	-19566.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	5.31192034288209	5.01556292291729	5.00677018648261	4.26860114259427	4.38957898140892	4.11711774780498	-2.02823650342468	8.09070647799472e-06	0.000332943375183474
Merged-chr1-173412657-2	chr1	173412166	173413166	+	894.666626	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7938.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.72386706920408	5.27737545076481	5.27262957863101	5.41679714344731	5.55461447586177	5.81229852520851	0.278960851156657	0.443156300050078	0.803662801744639
Merged-chr1-134417743-2	chr1	134417243	134418243	+	751.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2079.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	5.8284699289212	5.7367195906022	6.13875667238083	5.54457741301853	5.93038608094883	6.0555175081501	-0.0788499645110966	0.814557350617388	0.956366417809675
Merged-chr19-46934259-1	chr19	46933759	46934759	+	889.1666869999999	f0_balb.idr	intron (NM_029810, intron 2 of 17)	L1ME1|LINE|L1	28092.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	5.30350164413878	4.99216158615399	5.20134669124257	4.82343197045942	5.17430233010774	4.99354277754356	-0.330147982337271	0.390680586149395	0.769855726871472
Merged-chr6-126940067-4	chr6	126939555	126940555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	89.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	7.4292827299662	7.54586447218146	7.42243559130525	7.84707246859403	8.1150228781854	7.61289814647019	0.599613675695525	0.0142885674017884	0.128490556183725
Merged-chr7-105642040-3	chr7	105641420	105642420	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360053)	TTS (NM_001360053)	1475.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	5.31179671848302	5.54998452711931	5.63040957274529	5.37465028612524	5.38360657957991	5.53113870744463	-0.138676876268897	0.682045177942437	0.914930546030715
Merged-chr16-27374278-4	chr16	27373765	27374765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4026.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	5.03871216489533	4.57247426726201	4.81947814123893	4.97211992718053	4.59233558279979	4.64642971127651	-0.17619721190304	0.682636059565585	0.915155649724165
Merged-chr2-119549485-1	chr2	119548985	119549985	+	626.0	f1_balb.idr	intron (NM_019769, intron 1 of 6)	B1F|SINE|Alu	1778.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	2.66319154458237	2.62141746187055	3.06330693011438	2.55811267086824	2.60128078415346	2.67460129363564	-0.971899616416811	0.214846446669983	0.608043136777522
Merged-chr5-90224058-4	chr5	90223537	90224537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033310)	promoter-TSS (NM_001033310)	-41.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	7.57289124020514	7.87237811736435	7.5282628635302	7.55076006953991	7.70359893334307	7.41698342606057	-0.150417553183638	0.535853454762712	0.853668337370661
Merged-chr11-117663648-4	chr11	117663152	117664152	+	922.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	9363.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	6.54501320176042	6.82362089018579	6.71705369671558	6.40923970138404	6.77237594113979	6.52575430425545	-0.180447086552179	0.515099468573047	0.84337265078831
Merged-chr6-136804423-4	chr6	136803938	136804938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-7.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	8.68841156281669	9.06010740333503	8.60773907743526	7.90531224640533	8.21753306030266	8.02269354555934	-1.03899807283826	1.41447256486761e-05	0.000540631296175948
Merged-chr16-11017988-4	chr16	11017468	11018468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9070.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	3.38668843269799	3.27144164899923	3.39062181340743	3.70499069995202	3.03805346578301	3.40662949079194	0.238535947384711	0.719724902704611	0.927946685343569
Merged-chr8-3441848-3	chr8	3441345	3442345	+	904.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133962, intron 9 of 19)	intron (NM_133962, intron 9 of 19)	25803.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	2.8528106971283	2.87190817884136	2.99179894757528	2.98875256470462	2.75910454637	3.17628065165861	0.354175257242384	0.617387518690799	0.888810836054056
Merged-chr14-103048505-4	chr14	103048002	103049002	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1490.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	3.19879798982519	3.05942134954795	2.97338813539746	3.43495609314012	3.45947839381081	3.23812559370578	1.25034769957471	0.0569464333594767	0.307648281195646
Merged-chr1-74238712-2	chr1	74238212	74239212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	PB1D11|SINE|Alu	2195.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	6.20323081711394	6.09153575740249	6.08219418684906	6.47024468050228	6.60310833018656	6.75886477072212	0.789821766534988	0.00420483495621469	0.0539848645327437
Merged-chr5-150115972-1	chr5	150115472	150116472	+	616.0	f1_balb.idr	Intergenic	Intergenic	97297.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	2.27709089429677	2.2990225140116	2.61824678997615	2.81381388115497	2.63294782307874	2.7548633046241	2.10810486006483	0.0161350110963918	1
Merged-chr10-61694502-2	chr10	61694002	61695002	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1012.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	4.03097351295107	3.84170100312149	4.11683946283957	3.77108322332849	3.87728561679576	4.04882040691326	-0.296233691400704	0.563775501413347	0.865992481769395
Merged-chr2-84798779-4	chr2	84798228	84799228	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-100.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	7.0344881921288	6.63021265734736	6.96235394404446	7.16757221628022	7.21763151033838	7.06063438001656	0.410182225387733	0.113748391067981	0.450553440471489
Merged-chr6-86439716-2	chr6	86439216	86440216	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243741, intron 1 of 9)	B3A|SINE|B2	1070.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	5.98693585807845	6.34515937018591	6.35042577934319	6.22823366869571	6.18624036122839	6.4982992466217	0.11358794228783	0.704276821572248	0.9223772679418
Merged-chr2-5804615-4	chr2	5804072	5805072	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356502, intron 8 of 11)	intron (NM_001356502, intron 8 of 11)	-40462.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.82122257973745	5.86161565823061	5.60963619997634	5.55803671775379	5.612659696011	5.64438357976641	-0.317976395880592	0.313335728216067	0.70794067756605
Merged-chr5-112278504-2	chr5	112278004	112279004	+	969.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	ID_B1|SINE|B4	1813.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.16450539318241	5.41357910416785	5.18073479872365	5.52396349832382	5.18585920282114	4.82514805291381	-0.0869431463604441	0.827201495103871	0.959380324551223
Merged-chr9-78430686-4	chr9	78430176	78431176	+	973.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125721, exon 5 of 5)	non-coding (NR_125721, exon 5 of 5)	12561.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	4.76035566744531	4.81630329034001	4.70687841152593	4.4987624123882	4.51316408662144	4.98629095683968	-0.214885815271053	0.614941749605483	0.887656531489367
Merged-chr2-60839007-3	chr2	60838518	60839518	+	775.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	42420.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.70331543751121	4.3245601787505	4.66344714303441	4.31781813419868	4.2393310604578	4.53449478723574	-0.533123500393313	0.240819623259943	0.637831653049826
Merged-chr16-94207417-4	chr16	94206917	94207917	+	796.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	MTB_Mm|LTR|ERVL-MaLR	82874.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.25007992610225	3.50507376839937	3.50433943612769	3.74108325499299	3.5197634554987	4.01341279730895	1.20004471084315	0.0465029255012105	0.272900359012882
Merged-chr2-4508142-4	chr2	4507631	4508631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-51623.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	7.02702026341678	7.17800887137009	6.78814123668547	7.23366327309492	7.53911967090637	7.36068600844795	0.554274494162053	0.0311072149369457	0.21350896151723
Merged-chr2-43772864-4	chr2	43772375	43773375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	24051.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.27061379466607	5.46341457839774	5.14943299297452	5.48619284308322	5.37863248633031	5.31554994704951	0.170731288070989	0.623906996406159	0.891718254783119
Merged-chr13-60701975-4	chr13	60701384	60702384	+	968.15625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	84480.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.17378235103874	6.2603360526913	6.5058273385914	5.88730832730422	5.87777365307036	6.20368075493236	-0.552617999482423	0.0670984570888468	0.338599372656964
Merged-chr15-38644451-4	chr15	38643941	38644941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17463.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	6.82420026917265	7.13534073106366	6.70972261749087	6.58939465376988	6.8070231884671	6.56345002606121	-0.382232009702726	0.164978408652041	0.539625119977949
Merged-chr8-27174710-4	chr8	27174203	27175203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-57.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	5.81717915693056	6.04826355013248	6.13004856055956	5.85994894621723	5.77813884488386	5.7491116545467	-0.356408683741304	0.243882888864325	0.641007246718769
Merged-chr16-36784806-3	chr16	36784260	36785260	+	843.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021301, exon 1 of 22)	exon (NM_021301, exon 1 of 22)	202.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	6.46743803861278	7.10077853094812	5.36229998622214	4.78203334394283	4.75321983527589	4.59049609321457	-3.43590955801791	8.13698782199855e-05	0.00238234511855333
Merged-chr2-73458026-3	chr2	73457524	73458524	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1K|LTR|ERVL-MaLR	-4135.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.65220495807949	4.59717666347153	4.75116010512034	4.93519460213425	4.78214078408045	4.99651646832323	0.544514699709646	0.168542964663367	0.545164589147318
Merged-chr18-6163190-4	chr18	6162704	6163704	+	965.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27106.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.12112505703803	4.25278381003321	4.29812076602319	4.67147059473438	4.42439592842026	4.69431060943607	0.960478979320051	0.0318335687046909	0.216370493773887
Merged-chr10-95500911-4	chr10	95500456	95501456	+	856.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359476, intron 1 of 5)	intron (NM_001359476, intron 1 of 5)	993.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	6.76422386800344	6.98730212449606	6.67807898007338	7.15131634003731	7.29236107474903	6.78692198164962	0.430652228716311	0.117506955323274	0.457641878705313
Merged-chr18-82686376-2	chr18	82685876	82686876	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	6358.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	3.91737639979864	3.81948733612268	4.45756950254071	4.07893930468084	3.73487413951138	4.20518648914446	-0.207255960720983	0.710835202127208	0.924506861819103
Merged-chr6-15720918-8	chr6	15720466	15721466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 1 of 4)	CpG	305.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.32764694512989	7.52723033916625	7.21535286878621	7.20986398207124	7.20417914553168	6.86112349337297	-0.384793648769995	0.132127710192891	0.486188104304079
Merged-chr1-177795193-2	chr1	177794693	177795693	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	intron (NM_007422, intron 1 of 12)	1316.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	3.46134797585541	3.67341297224281	3.61832731134662	3.63622828726702	3.5868730878831	3.58162502898271	0.0518104307165438	0.926087201279628	0.983305773102619
Merged-chr1-167339546-4	chr1	167339013	167340013	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-10478.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.4040853826539	5.2647038663209	5.01097726629203	4.79250128725713	4.61355748700719	4.76935844381307	-1.14306125865728	0.00325800664150709	0.04482344851629
Merged-chr5-122400838-4	chr5	122400341	122401341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8963.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	6.66953837870185	6.53161274887873	6.65655422190562	6.619987019757	6.64588642849662	6.45439810192762	-0.0568057107218737	0.827553033391189	0.959467071709035
Merged-chr9-55208980-4	chr9	55208460	55209460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028049)	promoter-TSS (NM_028049)	25.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	6.82021432583237	7.01582659861655	6.68526837882416	6.76851527611043	6.58468896358592	6.37899049275992	-0.4090148935782	0.136673884302856	0.49382446696806
Merged-chr15-7863740-4	chr15	7863228	7864228	+	955.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48178.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.02887838629857	3.49367481108193	3.21716658972513	3.02456987063116	3.14972686087163	3.3990960016198	-0.278579472578147	0.682409095065852	0.915072334923495
Merged-chr2-3355965-4	chr2	3355390	3356390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	10679.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	5.75137561995531	5.43330172609855	5.79524330849766	5.15098903749782	5.05138099489915	5.03860856330841	-1.14750912905501	0.00122447452463342	0.021098794004079
Merged-chr2-117328759-4	chr2	117328244	117329244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	14133.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.25957452032509	5.42750426193442	5.20523863657055	5.52305758358898	5.33712897879336	5.54463815574405	0.30703749228843	0.371506967357209	0.755652770238368
Merged-chr3-60501275-4	chr3	60500812	60501812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001253710, exon 1 of 8)	5' UTR (NM_001253710, exon 1 of 8)	133.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.62959169524996	7.57728424904444	7.71914559303626	7.62636343586315	7.39714214062015	7.70686386105827	-0.0924905703380016	0.688711673556516	0.917235946766438
Merged-chr8-115564687-3	chr8	115564159	115565159	+	778.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142235.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.43265768175891	3.28267632147909	3.90943425673601	3.30228589649645	3.15846909313942	3.75441895630259	-0.495774692644838	0.462774194173708	0.815435922849644
Merged-chr7-143021957-4	chr7	143021454	143022454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16295.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	7.21933335595203	6.94737590648389	6.99702309397627	7.09671594972935	7.39749711760553	7.4312497834689	0.38036167177473	0.134281572257979	0.489993860307513
Merged-chr1-84362582-2	chr1	84362082	84363082	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77937.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.10851952851538	4.10453626618179	4.11007632446222	3.76269396441826	3.64358468016738	4.26387508825699	-0.600348727026031	0.269017983739858	0.666194755066135
Merged-chr18-54899533-2	chr18	54899033	54900033	+	909.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 5 of 10)	exon (NM_175751, exon 5 of 10)	90647.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.47690763414255	4.28183047553517	4.27440027713928	4.22036142625482	3.68725298309704	3.72451266652293	-1.28155107426204	0.0178916310026245	0.150118668192637
Merged-chr4-149049640-3	chr4	149049115	149050115	+	871.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50197.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	3.48827975086982	3.09557565722972	3.2211554168484	2.86204731865627	2.61636716799613	2.79971512370664	-2.76546647706432	0.000622860674139828	0.0124824159378196
Merged-chr13-95849945-3	chr13	95849447	95850447	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	41975.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.40161734844931	3.35231726974718	3.79549655018206	4.10283961311823	3.95265208638484	4.39098694972023	2.09423647479805	0.000358888827859655	0.0080665644485538
Merged-chr8-82382486-4	chr8	82381991	82382991	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	20095.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.24688004055618	6.25982430772171	6.02263737670666	6.56387019437782	6.80112733255315	6.15571653712597	0.589399275170593	0.0574045572704643	0.309179778714531
Merged-chr1-136655259-2	chr1	136654759	136655759	+	640.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28137.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	3.87424536646562	3.80560274834248	4.0522062248964	3.95102014058616	4.19640891944525	4.4175279986695	0.842721746946191	0.0974017414860122	0.416135657941618
Merged-chr9-45274372-3	chr9	45273879	45274879	+	706.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5230.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	6.26574463017338	6.047629763685	5.99320424128299	5.87856233377229	6.08927000308942	5.80503517971239	-0.296748812517964	0.330333364927972	0.721867972104254
Merged-chr7-127573241-4	chr7	127572743	127573743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-105.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	6.48604722596433	6.68013050332814	6.26412305980367	6.63648614305295	6.43803171948112	6.0748392257268	-0.135137647910562	0.659512612903878	0.905467486247391
Merged-chr8-75098027-2	chr8	75097527	75098527	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 3 of 4)	intron (NM_010442, intron 3 of 4)	4409.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.61954258082911	4.45086429400844	4.88791019439802	4.61224579841323	4.51353363976305	4.84871780388229	0.00441353624012599	0.991873330422895	0.998351393644539
Merged-chr14-31177882-2	chr14	31177382	31178382	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 15 of 20)	intron (NM_022656, intron 15 of 20)	-9241.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	2.73323612454379	2.56431911751896	2.9036145783703	2.61604399541597	2.71226103959605	2.67899981373967	-0.351878557753836	0.643150062760338	0.899659932869141
Merged-chr13-49204513-2	chr13	49204013	49205013	+	582.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 3 of 5)	intron (NM_026738, intron 3 of 5)	11513.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	5.13423067804621	4.87646942404012	4.71364563099632	4.75404094734454	4.86842905020236	4.7807041620481	-0.275963603258359	0.491759977195385	0.830726385853964
Merged-chr4-55351920-1	chr4	55351420	55352420	+	698.0	f1_balb.idr	intron (NM_009011, intron 1 of 9)	B1_Mus2|SINE|Alu	1878.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	4.74838360819422	4.68787387184421	4.43971828414665	5.43521365953622	5.06496766155674	4.78299645679484	1.07173083489872	0.0130730847913888	0.121377509408823
Merged-chr6-129229250-2	chr6	129228750	129229750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8795.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	4.43048127186678	4.54306275527437	5.10274787454492	4.49361703338639	4.61700156219313	4.73652442267927	-0.228548496053751	0.618230397680561	0.88921047052262
Merged-chr18-36678525-4	chr18	36677987	36678987	+	929.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083317)	promoter-TSS (NM_001083317)	-728.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	7.52900839867472	7.46203850037617	7.23723578177703	7.2669531435084	7.50712535006101	7.11748141382607	-0.153678456792005	0.541213835318535	0.856765739682368
Merged-chr4-86579679-1	chr4	86579179	86580179	+	618.0	f0_balb.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4006.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	5.22200928194635	4.68723116786044	5.18319410683637	4.88321788631118	5.08961016528978	4.9043382125414	-0.172294595515204	0.673984432246217	0.911765894490851
Merged-chr17-63375005-2	chr17	63374505	63375505	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 5 of 8)	Lx9|LINE|L1	-62032.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	3.50688802933697	3.42127646053248	3.90114482571794	3.88804101226365	3.8667016527823	3.6689654434096	0.665181568766836	0.247201752081421	0.644145276280485
Merged-chr9-104269457-4	chr9	104268954	104269954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6524.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.71489067711906	5.58359559996609	5.74247364102428	6.05094550657276	5.9777913755976	6.3403939199705	0.783820196443378	0.0115887935460035	0.111554874291515
Merged-chr12-80061083-3	chr12	80060588	80061588	+	775.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51925.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.43842594292173	3.15733777587117	3.26032608258623	3.18036221915796	2.93575539305565	2.83248513341936	-1.31737123924763	0.0640610160632546	0.329853818983591
Merged-chr5-99327732-1	chr5	99327232	99328232	+	745.0	f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	B3|SINE|B2	-74805.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.18521382734537	7.25204989263268	7.24004816775439	6.95652217957237	7.23638719889302	7.11607227301403	-0.170310911738294	0.479023022914527	0.823983372763153
Merged-chr12-12270157-4	chr12	12269645	12270645	+	883.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	MTD|LTR|ERVL-MaLR	8006.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.82783784802322	8.18943701535677	7.83368046662671	7.6328249794765	7.92468491583499	7.47565566929075	-0.380133535497891	0.135977222648889	0.492894477986004
Merged-chr1-131061263-2	chr1	131060763	131061763	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	B1F|SINE|Alu	36580.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.62553125507957	4.7062190735257	4.76359365341424	4.47387991014805	4.31561334640246	4.51535843039971	-0.657351389326497	0.118804105967862	0.460712023070245
Merged-chr17-7169469-4	chr17	7168994	7169994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-621.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	6.35222368140436	6.5149900463875	6.30734747470202	6.11454656225099	6.31072785522963	5.91679653138282	-0.433128917003111	0.140842296674598	0.501450363202116
Merged-chr5-122726284-2	chr5	122725784	122726784	+	721.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 8 of 10)	intron (NM_001310718, intron 8 of 10)	18740.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.29873947148607	3.01294946284491	3.1183543316309	3.24889878688092	2.92873006451995	3.41371574821247	0.238512401525104	0.72795648299383	0.930348818287287
Merged-chr13-97129313-4	chr13	97128814	97129814	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021552)	TTS (NM_021552)	8612.0	NM_021552	59050.0	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	6.17726895966075	6.21083612296801	5.84446082052709	6.12766321655138	6.48487306093352	5.85347063459112	0.169849644427627	0.608336462774177	0.884987135568878
Merged-chr3-88510152-4	chr3	88509648	88510648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6796.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	5.86050163512826	5.43712326357552	5.44026269817676	5.23610022363544	5.34455222062558	4.81224954122581	-0.847716569909852	0.0314310550236881	0.214781965633811
Merged-chr18-67606237-4	chr18	67605708	67606708	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35147.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	4.36374392352388	4.3545706404051	4.28068516160599	4.47481650271609	4.42223736241401	4.39405203284455	0.246644296622326	0.571964202138946	0.869773807126863
Merged-chr19-26605964-5	chr19	26605525	26606525	+	959.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	865.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	5.64883799729093	5.38307256724168	5.31455624054011	5.35335671273288	5.4321531536703	5.63951315544501	0.018058323962266	0.958330238039646	0.990016978751081
Merged-chr1-64530096-3	chr1	64529560	64530560	+	833.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2744.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.13541063223019	3.2798359630435	3.28374809262426	3.40876990954173	2.80691095194113	3.46335862363531	0.106865595997936	0.882903454920162	0.973325083825709
Merged-chr16-65197465-4	chr16	65196972	65197972	+	888.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-91688.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	2.77375059296766	2.63601639454759	2.91487268158819	2.88628252636003	2.588520335536	2.47637259011022	-0.600010335719709	0.457436479778658	0.812284129261024
Merged-chr13-44480334-4	chr13	44479839	44480839	+	863.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40612.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.12739966983617	4.10986520953542	4.06937508123313	5.39104476281698	5.25352886446927	4.9971974677257	2.74020034519785	1.05576692624923e-09	1.16047892205212e-07
Merged-chr7-110205055-4	chr7	110204569	110205569	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-16634.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.49683265161978	4.50400465367851	4.7949660196819	4.23348056792846	4.76702378865786	4.89372628901348	0.144952312654175	0.755161344040752	0.939242515534853
Merged-chr5-65248046-1	chr5	65247546	65248546	+	563.0	f1_c57bl6.idr	intron (NM_001359879, intron 28 of 35)	B4A|SINE|B4	48350.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	5.45693316322583	5.3916286345438	5.4183475081193	5.40316595813068	5.61775075287376	5.5956170547964	0.231694536131771	0.481518623599007	0.825121444939066
Merged-chr11-121421339-4	chr11	121420852	121421852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181420)	promoter-TSS (NM_181420)	-21.0	NM_181420	238024.0	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	5.16967805191643	5.04791139684572	5.1993046274273	4.92586664468468	4.96742906133463	4.84368118619554	-0.468765465868589	0.205520867526748	0.59612299456777
Merged-chr8-26977694-3	chr8	26977189	26978189	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101502, intron 1 of 1)	CpG	353.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	7.45335798867587	7.60644839066745	7.71258067406792	7.62499811492047	7.46330801583372	7.98566664405108	0.160660515189318	0.527249634246789	0.84989127404895
Merged-chr17-72839407-2	chr17	72838907	72839907	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	1359.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.32520175606458	4.14161298218052	4.02126897420395	4.28798985440098	4.29654459517181	4.2382373988816	0.273279023503463	0.560349092941061	0.865206445804495
Merged-chr3-9350032-4	chr3	9349534	9350534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53044.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	3.58485927730785	3.44291473246756	3.77816735566553	3.39963530158629	3.1368873895542	3.20462669339547	-1.37418800459599	0.0290413905385487	0.204612703127143
Merged-chr2-130728962-2	chr2	130728449	130729449	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31430.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	7.09609371619848	6.8017220947554	6.3511917685302	5.78579070198815	5.63187739508502	5.65376116963235	-1.84892229813592	1.11522133127906e-08	9.99949747123579e-07
Merged-chr8-71660833-6	chr8	71660371	71661371	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 8 of 41)	intron (NM_001029873, intron 8 of 41)	10886.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	1.95272365833943	1.72425161468721	2.03110049083133	2.04552011128673	1.88927169846279	2.17319075883561	1.0547460541173	0.306184902163989	1
Merged-chr1-170864911-2	chr1	170864411	170865411	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	MTD|LTR|ERVL-MaLR	2860.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	2.92970928219712	3.32491764518762	3.38816556966688	3.12770252394545	3.53031230010663	3.45876366767686	0.614876044353281	0.370621699849581	0.754925101617721
Merged-chr2-24365466-3	chr2	24364939	24365939	+	765.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2236.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	3.20239568703471	3.15125951944429	3.14090577581803	3.47019124025615	3.34306199614356	3.3322664872162	0.887468789892866	0.150938012644357	0.518185012836228
Merged-chr1-36940538-4	chr1	36940038	36941038	+	867.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	7.78451308354651	7.75649847422199	7.5050115451383	7.85907098194411	8.12547696940842	7.84065465344615	0.372050824619066	0.112039656876081	0.447075056791733
Merged-chr7-63929313-4	chr7	63928769	63929769	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	9646.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.2353309549297	5.17326010269436	5.67484843367101	5.43166596141225	5.65171612707975	5.83138929242873	0.529085759448213	0.144173548426658	0.50688268971502
Merged-chr11-6292556-4	chr11	6292046	6293046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252288)	promoter-TSS (NM_001252288)	-12.0	NM_001252288	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	8.53397135973754	8.82612316119074	8.11791942213852	8.61705503734952	8.91187025448573	8.1734024500499	0.108076571694223	0.711117930414327	0.924558647751225
Merged-chr11-55449997-2	chr11	55449497	55450497	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11211.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	4.46036515834366	4.33074893091381	4.83331709864715	4.04266299906631	3.98816125478067	4.20299744964818	-1.2781714937325	0.00838596465888812	0.0890251782772088
Merged-chr5-12184604-3	chr5	12184080	12185080	+	865.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-198586.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	3.631451862738	3.82161066637368	3.52012514047039	4.09942887677848	4.17783171228021	3.82521152534225	1.18611989061524	0.0320682026605687	0.217424280987986
Merged-chr19-4154792-2	chr19	4154292	4155292	+	972.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011778)	TTS (NM_011778)	146.0	NM_016933	19265.0	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	2.77822816974342	2.82086358678536	2.87183419835559	2.74339829736637	2.87970600359609	2.69607617932876	-0.212980122076148	0.768702142902259	0.942908054936408
Merged-chr12-40469141-4	chr12	40468628	40469628	+	968.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23075.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.29764076494309	4.38854425829735	4.13007055719226	4.44581060457564	4.44930034595825	4.55833573428498	0.50890128450407	0.255650662505079	0.652721090080474
Merged-chr5-90772454-4	chr5	90771956	90772956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	21.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	6.94186976643599	6.80393932003357	6.57877843244838	6.41492015947762	6.59444227695956	6.55022235547075	-0.423809928683999	0.114472532967628	0.451949278171341
Merged-chr1-86416476-4	chr1	86415977	86416977	+	857.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9852.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	6.64073081313149	6.60281149967182	6.93013030672758	6.81322883229514	7.08178767692198	6.6220849612365	0.21760274560803	0.436216948614265	0.799470052648526
Merged-chr4-129036253-10	chr4	129035765	129036765	+	808.616638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-22006.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.01381203234106	5.73895134192035	6.2616028682989	5.81402886547193	6.07582846412445	5.96836433332965	-0.0877200658649671	0.785062694084134	0.947850129107983
Merged-chr17-24426628-4	chr17	24426127	24427127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010023)	promoter-TSS (NM_010023)	-56.0	NM_010023	13177.0	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	6.6018118133653	6.64145610411916	6.65037530000897	6.09591377633245	6.2053969078747	6.36351066314448	-0.669783720331602	0.0129214750185561	0.12041327061754
Merged-chr7-45433799-2	chr7	45433299	45434299	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011304, intron 1 of 14)	intron (NM_011304, intron 1 of 14)	665.0	NM_011304	20174.0	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	4.92764502235814	4.89719810760303	5.31377721685996	5.14448505544678	5.35620383526707	5.40529817969536	0.534562491903847	0.154845019728572	0.524137352598447
Merged-chr8-82867871-2	chr8	82867393	82868393	+	738.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	MTD|LTR|ERVL-MaLR	4537.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.71095729294842	2.63585429202458	2.43700828434772	2.77311337197784	2.5857804839618	2.89664300774646	0.814888002431371	0.310854415011468	1
Merged-chr9-116059290-4	chr9	116058788	116059788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	B3A|SINE|B2	116075.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.59099886363379	5.92733871579727	5.99334551700074	5.67505991592466	5.69674318205094	5.79937227774763	-0.220688867877914	0.49247438382897	0.831074868266999
Merged-chr13-55600009-4	chr13	55599511	55600511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001311137, exon 1 of 5)	5' UTR (NM_001311137, exon 1 of 5)	115.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	5.95514959580673	6.04075915964103	6.21206676390945	6.29830306640987	6.24448590697369	5.72084996020014	0.0993915794420945	0.757194720103753	0.939819795914786
Merged-chr11-80210546-2	chr11	80210046	80211046	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	1491.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	3.78709576765659	4.0200020792481	3.98139113553345	4.17601925096962	4.24966958061372	4.32505191933054	0.914769074346191	0.0605471422403981	0.31863934043002
Merged-chr2-129628451-2	chr2	129627934	129628934	+	643.766663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291019, intron 7 of 7)	intron (NM_001291019, intron 7 of 7)	32972.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.62701394046023	3.56421416509467	4.07019978844626	3.56678217500962	3.51411513828242	3.9244791309939	-0.312135706285835	0.599191801256335	0.880924908462167
Merged-chr11-107382989-2	chr11	107382489	107383489	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	87731.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	2.93046644709695	2.61920317385288	3.19859041241325	3.19990513445635	2.91763543805588	3.42721227495637	1.1421254036937	0.14408768803451	0.506710013959755
Merged-chr11-115067648-2	chr11	115067148	115068148	+	904.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5609.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	4.49213071261052	4.11194185327467	4.5670085135237	4.53301446253374	4.54907676523359	4.33527296678539	0.211289942693041	0.647409222206129	0.901387590337291
Merged-chr17-31856616-2	chr17	31856125	31857125	+	854.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-821.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	4.46029647840938	4.47768545853619	4.07937417541988	4.29456675610836	4.12384451898288	3.93571247777304	-0.621432067179041	0.21060227935821	0.602769092283296
Merged-chr12-108630177-3	chr12	108629681	108630681	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-5572.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.84711831156621	4.82940200644514	4.82517234770427	4.81002099336415	5.03456536127068	5.10156026256726	0.333714654443249	0.384271817079531	0.765379389016507
Merged-chr13-73603979-4	chr13	73603459	73604459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	-43.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	7.9067645172407	8.09048731131162	7.67291296386024	8.03834328160797	7.82519348192165	7.37100612902258	-0.178101268500971	0.513202314924949	0.842416687973146
Merged-chr11-120648148-3	chr11	120647600	120648600	+	772.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204820, exon 1 of 2)	5' UTR (NM_001204820, exon 1 of 2)	237.0	NM_026751	68515.0	Mm.194594	NM_026751	ENSMUSG00000025141	Myadml2	1110012N22Rik	myeloid-associated differentiation marker-like 2	protein-coding	2.4020659236827	2.26467485658202	2.53587698994198	2.30769389042185	2.19540158129683	2.29191685038503	-0.925824813050921	0.279921416440768	1
Merged-chr16-94502308-4	chr16	94501808	94502808	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	24321.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	5.86078790331366	6.02005088694014	5.60292216259232	5.46754830096172	5.38782461149112	5.36033035673324	-0.823841588136512	0.012793080100133	0.119570188528452
Merged-chr5-122344484-2	chr5	122343984	122344984	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 4 of 10)	intron (NM_144912, intron 4 of 10)	9711.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	4.92969617070946	5.01598231736885	5.14905408340166	4.77237117879095	5.04909070854218	4.70350304116494	-0.359104504217392	0.364560745067931	0.74990409323904
Merged-chr17-73953453-2	chr17	73952953	73953953	+	819.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3257.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	4.39859034340269	4.54361108272574	4.89507941583996	4.6780261642102	4.82426958777281	4.99245021385197	0.504308032804989	0.239775864531107	0.636751711516597
Merged-chr18-82691606-2	chr18	82691106	82692106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	1128.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	5.61966521334747	5.44329302530569	5.69750013123447	5.62507498183311	5.59239847848072	5.59961735336057	0.039913325049599	0.901185343839366	0.977124931501791
Merged-chr7-25681069-4	chr7	25680544	25681544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172148)	promoter-TSS (NM_172148)	-114.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	8.06321289137079	8.00795141300101	7.75383433267868	7.80276238562545	8.18576792833183	7.91023952305917	0.0408298688416851	0.864441109768885	0.968278303984855
Merged-chr13-45911395-3	chr13	45910886	45911886	+	925.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	53605.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.18209752037366	6.16996857305222	6.17491106520248	5.27321568435937	5.40993554840327	5.47643846343201	-1.43105409856209	3.90152338605002e-06	0.000178326978206758
Merged-chr10-117878365-2	chr10	117877865	117878865	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32391.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.65268526423403	5.71067948376654	5.56853412470651	6.48321873440239	6.32374254003586	6.05523182726003	1.13828049910178	0.000211847066858502	0.00524312038642542
Merged-chr1-64482300-4	chr1	64481840	64482840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-50464.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.29369940544796	4.3301574045043	4.17643180826766	4.4140000395297	4.38731227176805	4.63080069905803	0.520245547689316	0.24577106115292	0.642821080898342
Merged-chr11-58103973-4	chr11	58103474	58104474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	4.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	7.7663017077125	8.0657194464329	7.83364041237539	7.53732183266911	7.62309253065474	7.6089776344479	-0.442946051986633	0.0507144026540485	0.286849569440423
Merged-chr10-67113534-4	chr10	67113036	67114036	+	935.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13722.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.72633763065847	6.53164252546709	6.0903200452624	6.34780445765468	6.41896038548768	6.15053294717807	-0.281492099037227	0.36412490604473	0.749582018361453
Merged-chr10-118100798-4	chr10	118100293	118101293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40994.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.26271574035453	7.09038631518044	6.74441994110254	6.8976830210628	6.96486919042565	6.70341551841211	-0.295769669786516	0.278439339166921	0.675623815920472
Merged-chr8-46789612-4	chr8	46789095	46790095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	49850.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.55882087591487	6.51418938362848	6.54133176178235	6.60865132019046	6.39430482518409	6.45796862549422	-0.0798829477911649	0.761778330933415	0.941318402670338
Merged-chr11-19494040-2	chr11	19493541	19494541	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	428766.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	3.66398630200131	3.47125136530353	3.49461171982594	3.54842298661548	3.44493489353112	3.82139564395763	0.202800241561916	0.726964185613384	0.930086065338964
Merged-chr4-63560268-4	chr4	63559814	63560814	+	970.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	87.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	7.1008047654348	7.21587465305986	7.2111799158015	7.63081316110447	7.5749894891973	7.35009616858937	0.523535685670258	0.0256193559719289	0.189689924516129
Merged-chr5-44215804-4	chr5	44215289	44216289	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 2 of 13)	intron (NM_173764, intron 2 of 13)	10817.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	3.35521272408796	3.21435522388532	3.14706379759919	3.46750448967611	3.42694440324477	3.56161331631076	0.92434753776825	0.131216630962744	0.48419413676509
Merged-chr11-107314602-2	chr11	107314102	107315102	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	ID_B1|SINE|B4	-125221.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	2.98700198957238	2.93962899613993	3.04020292546466	3.049956015119	2.93980887969564	3.48733976445184	0.809931176823258	0.245021116705749	0.642381314494918
Merged-chr3-101598383-2	chr3	101597883	101598883	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6324.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	6.5798658019658	6.28534400561729	6.78416752339285	6.84242870312561	6.76159029067979	6.88533784972515	0.429438382879763	0.120174581794642	0.463626047939939
Merged-chr1-159201424-4	chr1	159200902	159201902	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-30798.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	4.73893826164211	4.95501087246568	4.85020265671622	4.85899116603408	4.96595361447975	5.33609865773784	0.449588632558735	0.260225339264826	0.657649400461384
Merged-chr4-135440277-4	chr4	135439777	135440777	+	939.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6472.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	5.96092157151553	5.78713924882458	5.62867558386543	6.11310548186085	6.08768815320474	5.80340478704951	0.367062187391729	0.242721996721823	0.639856157348047
Merged-chr12-4188388-4	chr12	4187896	4188896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	45569.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.61965498130376	5.60420368944541	5.8979896312935	5.40868848917058	5.44576719930165	4.98212901776723	-0.754346955385668	0.0381393248671329	0.241664222977375
Merged-chr7-80834584-2	chr7	80834067	80835067	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27541.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	5.10134564190765	5.37206733602947	5.13570676643302	5.43471768270465	5.64743069131066	5.62669931712533	0.698240866094465	0.0445287288278243	0.265983235341393
Merged-chr4-103114337-4	chr4	103113852	103114852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	-38.0	NM_027696	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	6.89259443646715	7.24425479163519	7.05269186425215	7.06125277078511	6.79015325316513	7.00514662231406	-0.184327490599786	0.478481150569171	0.823834402333981
Merged-chr5-21529330-2	chr5	21528830	21529830	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 12 of 20)	intron (NM_001199632, intron 12 of 20)	-14197.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	2.34699914730017	2.27952889304636	2.44443508831823	2.58307932790022	2.34069794109278	2.64424267982187	1.05690286451774	0.203244787357438	1
Merged-chr9-90232998-4	chr9	90232506	90233506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37763.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.49662444899408	7.167618935468	7.37321788149463	7.39108901868821	7.39598094298125	7.33161878417639	0.0334760482757859	0.888150784489691	0.97401529899353
Merged-chr5-53187375-3	chr5	53186877	53187877	+	893.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 3 of 23)	UCON28b|Unknown|Unknown	26075.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	3.54637863398374	3.77145414683633	3.70203737193777	3.28100673756361	2.98938036973318	3.34425725734388	-1.90696775240826	0.00344245083742073	0.0466665769436468
Merged-chr11-88949933-2	chr11	88949417	88950417	+	820.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5525.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	5.97789490356206	6.31197584332166	5.94217748405826	6.21154297092665	6.19792259931603	6.32741687047958	0.244260397291969	0.411765246790138	0.784045307489855
Merged-chr5-139452764-2	chr5	139452264	139453264	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	7770.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	2.41707865410483	2.45278948376759	2.63979551779351	2.60595054639675	2.49354994378065	2.52541104660492	0.237757987714439	0.762406250743048	1
Merged-chr13-6649311-2	chr13	6648811	6649811	+	818.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-540.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	3.72056820680287	3.57952627260534	3.64114661477565	3.90455053295057	3.7126548862979	3.60182617118539	0.335964992849919	0.540448213983484	0.85632302227606
Merged-chr19-53369250-2	chr19	53368750	53369750	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 3 of 5)	intron (NM_001008543, intron 3 of 5)	20791.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	2.53435680866021	2.60215790826208	2.88268689197599	2.53861460645386	2.68899349014949	2.78067641717423	-0.0242084461597177	0.975058315785476	0.994418938322767
Merged-chr5-43882286-4	chr5	43881792	43882792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	PB1D10|SINE|Alu	13483.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.77942551608756	6.5971247699055	6.40180893349582	6.82400537849083	7.12865231853481	6.53924842068975	0.401217122367662	0.17403860417411	0.553210993472106
Merged-chr15-63996696-3	chr15	63996198	63997198	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	1368.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.61921513876087	4.76060224316336	4.85754078636691	4.77013462213519	5.01953571528716	4.99298945356519	0.428062415111541	0.278269955469363	0.675555045695919
Merged-chr10-96163964-4	chr10	96163439	96164439	+	911.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62268.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.23160385150588	6.48589131397217	6.27125850608904	6.42845230441675	7.21014100554194	7.30808003016784	1.10037832055477	0.000866072981662965	0.0161181392659834
Merged-chr15-59653063-4	chr15	59652569	59653569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	4415.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.24022828739829	5.84122733015855	5.24272166553095	6.11009439148497	5.87932443438357	5.48786990687835	0.0120508820814488	0.976667412949584	0.994723308989508
Merged-chr4-105261484-2	chr4	105260984	105261984	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	104137.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.03317492225629	3.06223441776802	3.045844929001	2.99807493273752	2.78364633348441	3.11786882823609	-0.376363395695505	0.584359920775381	0.874561879083458
Merged-chr2-72474301-3	chr2	72473838	72474838	+	837.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1881.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	2.75829536307512	2.79715149815992	2.6311314859527	2.68979303025091	2.63456987748796	2.88854169994973	0.0132982296045133	0.985781369916536	0.996966634617303
Merged-chr19-41982972-4	chr19	41982464	41983464	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MIR3|SINE|MIR	1201.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.07561199057063	6.50350991490528	6.33777176864728	6.59162384693869	6.66041942244179	6.31798657313742	0.359075704933193	0.222719169880809	0.617656010694754
Merged-chr2-155404837-4	chr2	155404330	155405330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22974.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	8.22166598466077	8.1418523673272	7.63536176195829	7.81394321067866	8.08078779749541	7.35292339909295	-0.337673385366098	0.250780574487038	0.648153521953385
Merged-chr4-141539680-2	chr4	141539202	141540202	+	843.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1105.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	6.846004302018	6.65795541128818	6.88154721702098	6.9151920457502	7.20983299869667	6.70886067865343	0.275324339395148	0.314208759980972	0.708637665307082
Merged-chr3-69658390-4	chr3	69657886	69658886	+	736.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-59426.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	5.3573704207796	5.20520160564585	5.21939197290553	5.50075027000393	5.6417809782698	5.53089637961617	0.578982094074559	0.0837601556510869	0.383003518789671
Merged-chr1-64919111-2	chr1	64918611	64919611	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.91049627121102	4.91267426040621	5.01500661719976	4.7351663232566	4.93583422457026	4.70626377546158	-0.303953986449268	0.436002947815977	0.799430009957291
Merged-chr10-13469094-3	chr10	13468673	13469673	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	5223.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	3.08976524814323	3.16702348650908	3.04791664910536	2.96953273513792	3.09619612816801	3.11999672050708	-0.186940942031189	0.775557868477945	0.944682505926692
Merged-chr17-44350319-2	chr17	44349819	44350819	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	161747.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.29009896168472	3.22937004494587	3.01361538339757	3.05583860538181	3.10997354135857	3.48207292685857	0.151343544553412	0.822697119300712	0.958135961464233
Merged-chr10-39960287-4	chr10	39959793	39960793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173500)	promoter-TSS (NM_001173500)	-140.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	7.25474440379377	7.45317504619671	7.35931846288604	7.28325621206019	7.5288855715916	7.40571288278675	0.0804849662878561	0.732473010109817	0.931782229960786
Merged-chr12-113120104-2	chr12	113119604	113120604	+	789.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_054081, intron 3 of 19)	intron (NM_054081, intron 3 of 19)	-20132.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	2.33337753563984	2.58152961172785	2.33081808070274	2.46699119495151	2.47320392400936	2.60083312042709	0.530010248737237	0.522633616889327	1
Merged-chr6-148539869-2	chr6	148539369	148540369	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74440.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	3.78624907635633	3.85568346911975	4.16395731096903	3.51320683377844	3.55944478237289	4.10474148561302	-0.613721105022594	0.295639449835237	0.6925798212347
Merged-chr2-153558628-4	chr2	153558144	153559144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28673.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.56064024989099	4.6485258303166	4.80119929607529	5.91559803154946	5.67051486468925	5.26332032372919	1.09113977025302	0.0192287487976776	0.157336989968618
Merged-chr18-88910189-3	chr18	88909707	88910707	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16000.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.22527624498308	3.5345234141145	3.38436855740202	2.98016928653181	3.10483344364721	3.11181567710226	-1.37056133029571	0.0382093695725326	0.241847346979408
Merged-chr14-77911599-4	chr14	77911093	77912093	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	7354.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	5.21180142639305	5.42906652987603	5.67225431590977	5.70884337361075	5.46018013445427	6.08898686820336	0.604939853188329	0.101601423773473	0.425209510426403
Merged-chr1-74661657-4	chr1	74661162	74662162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014974)	promoter-TSS (NM_001014974)	-92.0	NM_001014974	67534.0	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	5.1640063403816	5.33005310449206	5.17910376639116	4.91635780128377	5.02962616099811	5.30523818701573	-0.301328230698545	0.414660719446553	0.785947360904528
Merged-chr11-118463100-2	chr11	118462600	118463600	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	4.68160941633138	4.65797602018122	5.20207958925095	4.32167059455958	4.70655311564384	5.05640556172422	-0.317050005379779	0.504440796515207	0.837711002822819
Merged-chr4-135406369-4	chr4	135405867	135406867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8140.0	NM_145555	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	5.32979383110436	5.34344056490065	5.21398963421115	5.0689420571746	5.30151578307932	4.69944132298516	-0.4788904727856	0.226315352318281	0.621278132925779
Merged-chr7-102034081-2	chr7	102033581	102034581	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	L2b|LINE|L2	-15926.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.80641064758578	3.62649377718838	3.37595601010418	3.41143265553506	3.29710368495225	3.44899554604616	-0.884159120941834	0.142690028223511	0.50422354730632
Merged-chr4-138944461-1	chr4	138943961	138944961	+	858.0	f1_c57bl6.idr	Intergenic	Intergenic	-22651.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	5.32299597405361	5.4978281744202	5.51623380033354	5.23454731117771	5.33244263744619	5.46605126487369	-0.200971834398498	0.554387898370685	0.862782109146522
Merged-chr19-44144474-4	chr19	44143974	44144974	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028607, intron 2 of 4)	intron (NM_028607, intron 2 of 4)	1972.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	3.36291797314937	3.52248176295611	3.92561984305487	3.37215184089507	3.26891480078679	3.56915308092354	-0.778622539285796	0.211855174958224	0.604279631081993
Merged-chr9-53667090-2	chr9	53666602	53667602	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_027807, exon 1 of 19)	exon (NM_027807, exon 1 of 19)	405.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	8.83513299592135	9.34384243214797	8.76907107947168	8.85949815571298	8.96682623859828	8.56283286953917	-0.277810642399211	0.275552784635794	0.673071953734776
Merged-chr5-64794152-4	chr5	64793673	64794673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9350.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.86528140880643	5.61435037296413	5.44176408757628	5.70316543253007	5.26183024702699	5.62179064436028	-0.234602735456834	0.508307681071889	0.839818423824339
Merged-chr3-96501001-4	chr3	96500504	96501504	+	920.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24181.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	6.09643379973658	6.17691538170258	6.08007659407593	6.85545246598359	7.07807829377459	6.92217214640949	1.34127714564564	4.09675963168617e-07	2.47016793792277e-05
Merged-chr1-193201583-4	chr1	193201083	193202083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153137)	promoter-TSS (NM_153137)	-37.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	5.54432321362844	5.80054786691162	5.5335565561487	5.75831057870567	5.99555318180719	5.59703054683165	0.305348187104504	0.358018463167077	0.744545257134442
Merged-chr6-72135731-3	chr6	72135184	72136184	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-12487.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.23244349798925	5.43050756331247	5.59206267599649	5.33826092192519	5.3090359283521	5.43338972917804	-0.119906653963753	0.728205852821735	0.930446739989419
Merged-chr19-5805699-2	chr19	5805199	5806199	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3027.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	6.53270454049535	6.187234541518	6.59411794358121	6.28473349093194	6.58125304919211	6.46540354686234	0.0156341881999914	0.95709802160383	0.989887454023164
Merged-chr3-100998247-6	chr3	100997704	100998704	+	949.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	(GA)n|Simple_repeat|Simple_repeat	-28541.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	5.34816662728234	5.37002703035919	5.63641247000889	5.26811144585779	5.16082016027579	5.2076810038844	-0.471226095217894	0.175880099268417	0.555900300080775
Merged-chr6-34868493-4	chr6	34867999	34868999	+	957.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	5353.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	7.51437469417533	7.82147488069695	7.70652864102381	7.68242828083882	7.72563650466955	7.44228493926443	-0.0844705139157175	0.721867569171685	0.928606209603791
Merged-chr7-102014611-2	chr7	102014111	102015111	+	861.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010531)	TTS (NM_010531)	3544.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	5.15505652354788	5.0029099255122	5.54969546609502	5.3529105243779	5.22804655911284	5.26936818033091	0.0834207293841465	0.8234488977358	0.958366850481353
Merged-chr2-58919881-3	chr2	58919391	58920391	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	164707.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.81715111030956	5.93694827994515	5.51888636995187	5.55574698783195	5.47586608525115	5.06435230333374	-0.715754508228949	0.0474185234308776	0.275813425042999
Merged-chr13-94097872-2	chr13	94097372	94098372	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40076.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.28080101888258	4.3326340343655	4.13711744222575	4.69901217164879	4.27536053207118	4.15727958988156	0.379049463753161	0.432714973054301	0.797472325349157
Merged-chr7-5078685-2	chr7	5078185	5079185	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 11 of 11)	intron (NM_001205231, intron 11 of 11)	-1550.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	4.91709408039136	4.91742755035092	5.39795023586605	5.09337884969566	4.85130867464219	5.53797076730864	0.193874602533072	0.648666514982005	0.901893237722341
Merged-chr5-64156396-4	chr5	64155892	64156892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3868.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.87213810726752	2.79568219605766	2.75166798953716	2.80602671183992	2.92049043956082	3.12174831308912	0.694219975095976	0.330953440136433	0.722231735604719
Merged-chr2-6271646-2	chr2	6271146	6272146	+	999.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-51111.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.07771329537346	3.0537209782507	3.14957361203864	3.00165003566956	3.12770468985896	2.98487837140257	-0.213088832214523	0.746716135534693	0.936300236930265
Merged-chr5-109555951-2	chr5	109555466	109556466	+	975.4833369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164735, intron 5 of 7)	CpG-11313	3027.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	3.63888329321826	3.37726427868669	3.6366609445438	3.74064213034446	3.78401222355955	3.95339025193373	0.923033277814591	0.0982260400525591	0.417784440377132
Merged-chr7-111121576-2	chr7	111121076	111122076	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015573, intron 1 of 2)	intron (NR_015573, intron 1 of 2)	1099.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	4.70283510151432	4.98381589422016	4.5808490033669	4.25240764888338	4.6789426044691	4.64798913280222	-0.54633193676182	0.223298810107372	0.618087468987021
Merged-chr2-27377124-2	chr2	27376624	27377624	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	50484.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.60272163573271	3.82479454868233	4.09119281586708	3.85350897414645	3.85344697395843	3.88094641966564	0.0516194231769732	0.923636508324562	0.982727549942016
Merged-chr4-83328212-4	chr4	83327732	83328732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4043.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.3708168179583	4.61316958601225	5.0102561458669	5.28359127510975	5.29852965298548	5.26753670712463	1.32404086002767	0.00127037452370522	0.0217009491620743
Merged-chr7-5112821-3	chr7	5112311	5113311	+	571.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145013, intron 2 of 2)	MTD|LTR|ERVL-MaLR	4100.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	3.41336022023348	3.65027346256609	3.8840951699054	3.8289264567356	3.29552818275893	3.65861946034214	-0.160847742482788	0.794676128919719	0.950816910994853
Merged-chr16-33687589-4	chr16	33687105	33688105	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	3139.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	5.7667639589355	5.52438340900143	5.79914296700368	5.83467007605658	5.52678185471685	5.76095057087698	0.0189769413848974	0.953709432954018	0.989446911725587
Merged-chr9-20978070-2	chr9	20977570	20978570	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1277.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	4.34577123254518	4.5981309859885	4.65270990843977	4.41475440051529	4.74858361616379	4.99840626153732	0.478435461431433	0.285248166967592	0.682814628441307
Merged-chr13-92335306-4	chr13	92334791	92335791	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-19492.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.37378989240547	3.54793787499231	3.54343645749589	3.03717938164708	3.00579807263025	2.91276057617516	-2.22854538777266	0.00146279576118652	0.0242752911242139
Merged-chr19-53421961-3	chr19	53421467	53422467	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31333.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.4430974000188	3.52121231134857	3.33927522935294	3.12953493589213	2.97891283860695	2.98518729091131	-1.78601344384678	0.00749494873124089	0.0821226881787059
Merged-chr7-110796803-4	chr7	110796293	110797293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 6 of 14)	intron (NM_009667, intron 6 of 14)	24189.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	3.02493292908864	2.76725333005789	2.94372328173777	2.94245138064332	2.65895067771405	2.95702193708698	-0.296484649916391	0.684638805606956	0.915930759709583
Merged-chr11-32629916-4	chr11	32629421	32630421	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12634.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.75192899966513	2.98852487943977	2.73939997441153	3.07166870129226	2.99379378536425	3.12226705066371	1.06518054858629	0.138152274865063	0.496860930453499
Merged-chr18-60481182-3	chr18	60480677	60481677	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	20806.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	3.42078420208166	3.55352158950857	3.39507290235513	3.04102614476986	3.11049620483051	3.2987403691509	-1.29496963969267	0.0420084195533629	0.256602303200427
Merged-chr19-40726903-2	chr19	40726403	40727403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 6 of 9)	intron (NM_001304721, intron 6 of 9)	67133.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.78927771439722	2.89844103386184	3.01226665959194	2.95367925895997	2.88844019224426	2.84499035562546	-0.0069036148048707	0.992093922741236	0.998393274596383
Merged-chr17-77968811-2	chr17	77968311	77969311	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231437.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.2439462919208	3.51639702353472	3.86675676994354	3.12692595336709	3.40981970057309	3.3952565770003	-0.904726905510212	0.169534242498099	0.546439877378084
Merged-chr4-126132415-2	chr4	126131910	126132910	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	MIR3|SINE|MIR	-15593.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	7.04371004752886	7.11839986829025	7.11964901738824	6.91049699469116	7.29665149079992	6.84712906364966	-0.0706919105039191	0.78818814948117	0.948904207939777
Merged-chr11-62602838-4	chr11	62602409	62603409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	32.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	8.86887247489597	9.1620865160477	8.41608032184113	8.64359684072019	8.98808982227338	8.57361164543326	-0.145419593270929	0.589044902679569	0.876739558209816
Merged-chr7-46615800-4	chr7	46615327	46616327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 7 of 10)	MIR3|SINE|MIR	23980.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	5.67405435204554	5.6332926734757	5.39515605701351	5.50553567143987	5.42727489840496	5.33063732732074	-0.296333464995202	0.374478787206118	0.758087520776938
Merged-chr7-17004170-2	chr7	17003670	17004670	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011155)	TTS (NM_011155)	9582.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	2.29260787467702	2.48472433225356	2.5818650045067	2.51671166012159	2.493972963713	2.77501325727238	0.833279680194657	0.309643217854975	1
Merged-chr4-126163247-2	chr4	126162747	126163747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162533)	promoter-TSS (NM_001162533)	94.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	6.16003683746795	6.32311532335169	6.07280935493736	6.00943614163188	6.09154266595079	6.17686034682842	-0.178465067273002	0.534558539715228	0.853068627162717
Merged-chr13-6889095-2	chr13	6888595	6889595	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-240324.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	4.36214289174672	4.35284877373807	4.41204492173195	4.47471725112418	4.07543375105539	4.59918344513403	0.04168831158281	0.929326233480432	0.984055753795234
Merged-chr14-103891023-4	chr14	103890557	103891557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46581.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.15671590135803	4.05282321985229	3.84225707374998	3.73633518715622	3.82494113665602	3.75194547369429	-0.79732847024107	0.126836658348394	0.475933468674325
Merged-chr13-96433907-3	chr13	96433407	96434407	+	949.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 8 of 13)	intron (NM_001042714, intron 8 of 13)	37253.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	3.41116045222346	3.16806345390408	3.33035500648948	3.07444220884656	3.05133180120547	3.29119028007733	-0.71519613126228	0.267188946234089	0.664562020632691
Merged-chr7-25753254-2	chr7	25752754	25753754	+	798.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	1505.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	3.42741688483974	3.79640334951222	3.68443335367723	3.76864244925888	3.70421059308582	3.70225378871841	0.266267840588736	0.634548769757848	0.896350313439852
Merged-chr3-88771611-4	chr3	88771081	88772081	+	875.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018804, intron 1 of 3)	intron (NM_018804, intron 1 of 3)	1018.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	6.55831115480626	6.77912074838916	6.0696494079323	6.3396445871127	6.2930615412063	5.37411917546563	-0.713870814481017	0.293187094723099	0.690196017357506
Merged-chr14-70176392-2	chr14	70175892	70176892	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	423.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	6.1142645662504	6.05431647973225	6.48967844787039	5.8543701875278	5.91989874396129	6.24828834029749	-0.364648355213721	0.249878704543338	0.646977230221927
Merged-chr17-78362537-4	chr17	78362041	78363041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	55611.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	6.18588277937712	6.34943136714228	5.97485761809942	5.96705080522206	6.07997632674069	5.88755574592175	-0.344183883990328	0.251259181920913	0.648731936769727
Merged-chr6-129499798-3	chr6	129499325	129500325	+	845.388916	f0_balb.idr|f1_balb.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	7340.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	3.47163214378332	3.54359302081175	3.69458186374723	3.18519594738515	3.0399169754072	3.29125706410178	-1.64618812026637	0.00962526268998601	0.0979004212817198
Merged-chr2-30078153-4	chr2	30077636	30078636	+	851.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153805)	promoter-TSS (NM_153805)	-562.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	4.36495986674649	4.30097290961345	4.76290603651513	4.52170780367275	4.5365305089625	4.2534784558465	-0.0750319674015665	0.871412730204104	0.970222087171093
Merged-chr7-48788984-4	chr7	48788499	48789499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-4.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	6.76650363490852	6.88892672742464	7.10304341108129	6.87728419694775	7.00866613319451	6.82240469066406	-0.013205666579167	0.958929715450003	0.990174309444982
Merged-chr18-12925967-3	chr18	12925452	12926452	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15889.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.88854216104706	3.87894844174632	3.6934742779278	3.87686106371073	3.91353568440931	3.7649304686733	0.0896727017716431	0.863791061185791	0.968269312109804
Merged-chr7-140998014-4	chr7	140997507	140998507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12737.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	4.78618745861239	4.96677809202101	5.02589099778865	5.13914884451246	5.03769354906157	5.05591230265845	0.328411392193666	0.378525098408118	0.760964396915746
Merged-chr19-44107454-4	chr19	44106903	44107903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007700)	promoter-TSS (NM_007700)	74.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	6.84089568883602	6.9097431418944	6.72651881205236	6.85736567616037	6.97827745285268	6.81638638779846	0.0895016496893743	0.719460755579421	0.927884839305547
Merged-chr19-44406972-2	chr19	44406472	44407472	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009127, intron 1 of 5)	URR1B|DNA|hAT-Charlie	737.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	2.71533984741402	2.84134026670169	3.06931379729247	3.07400650817209	2.91274010973508	2.77800870201808	0.245481990711291	0.736040032709897	0.933046642264646
Merged-chr7-122207448-3	chr7	122206939	122207939	+	657.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12057.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	6.78694968094119	6.56881000965709	6.34843190103068	6.63283110028735	6.557602536614	6.89006081010641	0.163817786952326	0.563599755486473	0.865992481769395
Merged-chr6-124893807-1	chr6	124893307	124894307	+	642.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-5607.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	4.90667775833425	4.71223814153909	4.72650315335948	4.79472888448909	4.57838878807703	4.75345979519489	-0.188975803024256	0.639739152874081	0.898199312621371
Merged-chr2-155357507-4	chr2	155357024	155358024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004721)	promoter-TSS (NM_001004721)	-100.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	6.07448598116033	5.75876190941907	5.9060140394734	6.16321968418845	6.16677957686978	5.48486226252507	0.121309547744626	0.729548422577999	0.930635866770147
Merged-chr10-40129947-2	chr10	40129447	40130447	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12307.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	5.29919794807394	5.8903375838447	5.70334330613279	5.69514974437189	5.78931474060946	5.88848109554376	0.244386887569441	0.481025552080902	0.824895641073304
Merged-chr8-125061139-3	chr8	125060667	125061667	+	851.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	RLTR40|LTR|ERVK	6972.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.9137171498373	2.83893619459571	3.05586713257979	3.50411148496228	3.253320792327	3.47049222482706	2.16436685743295	0.00168918677106819	0.0271130117374695
Merged-chr1-182489929-4	chr1	182489418	182490418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 6 of 20)	intron (NM_009794, intron 6 of 20)	27692.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	4.00715204475997	4.09960619292603	4.27392306523926	4.12143132431595	4.13522788162852	3.68830085899604	-0.343478562777068	0.516172109699451	0.844051513295388
Merged-chr4-59360887-4	chr4	59360387	59361387	+	808.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	L1MC4|LINE|L1	77746.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.97554725532429	5.29872803724662	5.03498580809772	4.57469321949604	4.80221318152754	4.7252559841197	-0.899860860498692	0.0241435778675546	0.182763721543257
Merged-chr13-5592639-4	chr13	5592126	5593126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265466.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.09762621566182	6.30442580735287	5.81912885849057	5.67258327255854	5.88892634431281	5.60179288619076	-0.636166102131733	0.0509744038226261	0.287674863895352
Merged-chr19-5473880-4	chr19	5473381	5474381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	-809.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	5.09974168886963	4.96409455489249	5.31524248733048	5.16831329340458	5.19999948246001	5.31841665672716	0.212570794741905	0.558307096437656	0.864610587604775
Merged-chr7-119720720-4	chr7	119720185	119721185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145585, exon 2 of 5)	exon (NM_145585, exon 2 of 5)	2934.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	6.50958066892067	6.57547414607662	6.37461466681435	6.30162260037815	6.17436522130304	6.00149303103735	-0.53269593797675	0.0578459137196707	0.310832598565473
Merged-chr5-32935775-4	chr5	32935325	32936325	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	72104.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	5.32688607253154	5.30652225342751	5.56287155248393	5.92531351055187	6.14314286574066	5.97859702262399	1.15667775097195	0.000265838845127562	0.0063217829738137
Merged-chr16-87626253-1	chr16	87625753	87626753	+	776.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-72701.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.17585712474423	5.54598483945901	5.91423743837673	5.60206241299631	5.4336657448856	5.53392153082353	-0.700030963441714	0.0453557305199175	0.268878834135683
Merged-chr2-27503820-4	chr2	27503336	27504336	+	789.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-11311.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.84400430151351	4.17488004994499	4.25407780799529	4.14126591121349	4.25949344329731	3.83180669869867	0.000714737268083931	0.998912710315068	0.999826323540084
Merged-chr10-56106838-4	chr10	56106341	56107341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163833)	promoter-TSS (NM_001163833)	-76.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	6.53819912490289	7.12756889285593	6.3458168013379	6.60802428563325	7.1176441204555	6.32113499240785	0.0188363393360865	0.958252472600264	0.990000537228272
Merged-chr4-40723206-4	chr4	40722679	40723679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077221)	promoter-TSS (NR_077221)	249.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	7.82583903058313	8.00075182153274	7.76948290645444	7.36649470839937	7.69965429906012	8.24685300169968	-0.071635930859267	0.805340788379965	0.953840812813326
Merged-chr17-71195892-4	chr17	71195378	71196378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-8776.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.4478998665723	6.09644788631532	5.87329286503063	6.13990894841776	6.47989654585	6.03630650922659	0.121070682844745	0.712636558619658	0.925242852120911
Merged-chr14-33324793-4	chr14	33324300	33325300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86224.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	3.30595475436654	3.13985773194402	3.35190786843355	3.0450049601682	3.04971055609464	3.20215630407447	-0.728461307029443	0.258288640282762	0.655806466621081
Merged-chr1-82797246-4	chr1	82796751	82797751	+	769.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-28795.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	4.93833233523148	4.90605842377419	4.6408206955236	4.67060019682993	4.76564180380679	4.90264722152955	-0.150468582612394	0.707741305354498	0.923528816860664
Merged-chr13-118386786-3	chr13	118386302	118387302	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021556, exon 1 of 5)	exon (NM_021556, exon 1 of 5)	450.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	5.84009783173068	5.8781240314993	6.18418813805235	6.5281023370702	6.18755233177987	6.28440467625741	0.634788398174905	0.0358368434303818	0.232574870689347
Merged-chr15-81594394-4	chr15	81593909	81594909	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177821, intron 1 of 30)	intron (NM_177821, intron 1 of 30)	8195.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.63850151462331	4.70710913733872	5.06791664695084	4.84864190131402	4.77500966786235	4.74515310204769	-0.0318767880169699	0.937852234282171	0.986179368327002
Merged-chr15-6557119-4	chr15	6556610	6557610	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22737.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.47072966512932	6.79821750046493	6.65721750240192	6.16041050135224	6.07704476215425	6.04644069547449	-0.908248663720246	0.00119645753414197	0.0207103887041575
Merged-chr1-131198030-2	chr1	131197530	131198530	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	B2_Mm2|SINE|B2	2155.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	5.64754460911169	5.59070721430955	5.5320363251432	5.30167627722083	5.73438551049433	5.383558440667	-0.172851331794238	0.61683488760804	0.888539528566059
Merged-chr13-119790874-4	chr13	119790365	119791365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-59.0	NM_001302549	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	8.19333829872185	8.30242771308427	7.97890060302844	8.31362443917251	8.17207931813671	7.95664862889018	-0.0146716476240836	0.949222633454223	0.988169196639905
Merged-chr4-156032050-5	chr4	156031493	156032493	+	901.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	5671.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	5.00123787065208	4.77190735929004	4.94529168969424	5.56404827086714	5.80148166103867	5.45129630401543	1.44341873471289	6.38107851863398e-05	0.00194205113891184
Merged-chr17-69193307-2	chr17	69192807	69193807	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	RMER17C2|LTR|ERVK	33951.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.37917399646045	3.34476094616653	3.48885002206595	3.46368695801996	3.12104955636239	3.34074461099343	-0.355379819997526	0.565756120012143	0.86688237163883
Merged-chr2-164859836-4	chr2	164859354	164860354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-2146.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.68524140679925	6.42910579466437	6.7365658463221	6.6095757485468	6.41390005116148	6.53623272974264	-0.158872170791267	0.558259410141532	0.864595191540967
Merged-chr6-129366072-4	chr6	129365571	129366571	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177686)	TTS (NM_177686)	15827.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	3.43122355324259	3.51873028063262	4.06739975072324	3.59971045781794	3.75680298405259	3.50464265860966	-0.225741116515015	0.713148541817551	0.92541785131338
Merged-chr1-37473526-1	chr1	37473026	37474026	+	551.0	f0_balb.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	15079.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	7.07404970051908	7.00321522442393	7.13373393481832	7.31209385610321	7.30847652527364	7.35313879484366	0.383116503524344	0.0967403634359687	0.41464408281404
Merged-chr15-80030018-3	chr15	80029527	80030527	+	685.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-15219.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.72085065802588	5.66085641394606	6.05589644489273	6.05367626104211	6.31660054750789	6.21967462861664	0.682579869576035	0.0270858905789409	0.195979372460218
Merged-chr11-120568093-1	chr11	120567593	120568593	+	782.0	f1_c57bl6.idr	intron (NM_011032, intron 3 of 10)	intron (NM_011032, intron 3 of 10)	5160.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	2.1200443085533	2.24796352657159	2.41388526514178	1.96213110667239	1.87822297512615	2.1039184985531	-2.44907532294664	0.0198462525761904	1
Merged-chr16-91358930-2	chr16	91358430	91359430	+	968.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13853.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	5.78169497252826	5.54949582135926	5.57522826165782	7.19764285541606	7.51671061155069	6.54279428470148	2.46826792956539	7.38665071244843e-13	1.44278974760894e-10
Merged-chr15-76351216-4	chr15	76350728	76351728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	-66.0	NM_001164607	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	7.2114361987118	7.74860299563884	7.68651691850345	7.56550904942866	7.70696528766235	7.44535648545343	0.0173811768009466	0.947100017201325	0.988008807662239
Merged-chr2-167007054-4	chr2	167006561	167007561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	7.47329987878486	7.30871590493557	6.47647710937684	6.89869768102244	7.16370383295413	6.67073870543299	-0.350038603312611	0.305306820240288	0.701501724978019
Merged-chr11-98708722-4	chr11	98708215	98709215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	L1MB2|LINE|L1	7402.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	7.71363473040964	7.40909761885705	7.29566340033545	7.34088828229371	7.47535977788868	7.09102171846038	-0.25315042419096	0.330590958955005	0.721995374054402
Merged-chr1-64377960-4	chr1	64377461	64378461	+	996.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154843.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.42136702865134	5.3821209562185	5.72666742266211	5.39308514830967	5.25331964860092	5.58554752814592	-0.195937293792545	0.574830265990663	0.87091181304718
Merged-chr19-4012029-2	chr19	4011529	4012529	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133666, intron 1 of 9)	intron (NM_133666, intron 1 of 9)	726.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	5.15258274938753	5.19837430254161	4.71642993954911	5.38361220074928	5.15992852234523	4.82893947582215	0.207074083684049	0.617274906694066	0.888808400312019
Merged-chr12-112860477-3	chr12	112859928	112860928	+	565.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019925, intron 1 of 2)	intron (NM_019925, intron 1 of 2)	488.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	3.16036157615115	3.10372822716789	3.05964853446807	3.19195446583539	2.81909431862971	3.24778286364216	-0.0662365735587724	0.923671252488758	0.982727549942016
Merged-chr17-46650493-4	chr17	46650003	46651003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001316742)	TTS (NM_001316742)	165.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	4.78270169394505	4.740237950833	5.41541368590306	4.75663140661606	4.94794410732632	5.13558114226529	-0.114519946558179	0.792528006218435	0.949977808464961
Merged-chr4-126016464-2	chr4	126015964	126016964	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8195.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	2.53580573660624	2.3906519208981	2.6805426218102	2.38809962177584	2.21191844906557	2.75363648036521	-0.407453551716257	0.643295967832381	1
Merged-chr6-134919530-2	chr6	134919031	134920031	+	845.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	-870.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	6.3745628915887	6.65021941515239	6.36114197100287	6.10117139117982	6.32502117013419	5.93400243949276	-0.546051224139222	0.0675893680646323	0.340069031551939
Merged-chr12-108641187-4	chr12	108640687	108641687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5434.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.90022040254383	7.94680689301912	7.59424443419147	7.80759075526356	8.13962999906216	7.63120842064891	0.08170493633244	0.748924593624635	0.93711275444937
Merged-chr4-119174294-4	chr4	119173795	119174795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183140)	promoter-TSS (NM_183140)	-100.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	5.26154378550416	5.48114277973638	5.56906945042069	6.48810918234803	6.68117195551294	5.60351737055239	1.58902726545277	3.91350309657895e-05	0.0012881122059341
Merged-chr4-132306177-4	chr4	132305678	132306678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2500.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	6.62233720026072	7.18670531475679	6.94260615644734	7.05153174163908	7.64207164993829	6.98682670064863	0.500533457827234	0.1094119426524	0.441960722570073
Merged-chr10-94472502-2	chr10	94472002	94473002	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MER58B|DNA|hAT-Charlie	-42355.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.02940745595895	8.25131184440131	7.76656761479211	7.66244694982991	7.88952638991583	7.41334016142106	-0.511865702086143	0.0488770179060751	0.280922097513771
Merged-chr19-6235898-4	chr19	6235395	6236395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-55.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	7.82209524175496	7.63637937465469	7.47351337699668	7.55978191806245	7.8481779760987	7.59110313921083	0.0305754290238956	0.899173382655539	0.976510508522132
Merged-chr14-66223824-4	chr14	66223325	66224325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-10001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	7.52884181327985	7.6893669648534	7.27733011994013	7.20894297770164	7.46531935177594	7.23881406275772	-0.297143618871217	0.235586298021772	0.631834478188417
Merged-chr16-36817512-4	chr16	36817010	36818010	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	-8805.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	2.65930228261342	2.55407257506898	2.68736167044451	2.66630350748087	2.56686270733435	2.7604187311639	0.165201234260726	0.825981650009742	1
Merged-chr9-119445969-4	chr9	119445478	119446478	+	823.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153321, intron 3 of 7)	intron (NR_153321, intron 3 of 7)	1018.0	NR_153319	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	4.06539520375544	3.89871461018164	4.22092368051291	3.97908908860298	4.09209924303265	3.96347164966424	-0.126253912974392	0.79964162979379	0.952263864378888
Merged-chr11-103115406-4	chr11	103114911	103115911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-914.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	8.53165647545361	8.65910809282001	8.38747146933974	8.52601980905253	8.63210026094645	8.03767323534284	-0.141227110978739	0.568942061234144	0.868793137665407
Merged-chr12-38778701-4	chr12	38778227	38779227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1355.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.87648126556599	6.81044116959637	6.5875526013258	6.69883703875368	6.86115142049576	6.69761691762644	-0.0186646681178525	0.942743296361534	0.987202156853573
Merged-chr14-121358570-1	chr14	121358070	121359070	+	604.0	f0_balb.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	20660.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.07757635841384	3.26672210065232	3.16035153591854	3.15034042906573	2.9444672499312	3.28827742589644	-0.188205204556356	0.776078118480172	0.94480820353868
Merged-chr1-53773321-1	chr1	53772821	53773821	+	630.0	f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	11894.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	5.58504571784446	5.46857058537338	5.60902528281829	5.75843067205419	6.07336112750672	5.94884325589584	0.700645043946006	0.0264182430126524	0.193062459564095
Merged-chr18-35751678-3	chr18	35751107	35752107	+	690.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11053.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.80504630857485	5.69056819863122	5.39745235630726	5.40006360290277	5.62730023498041	5.42995446459927	-0.291388693157589	0.392434523397577	0.771172125304963
Merged-chr16-4079499-6	chr16	4079037	4080037	+	837.327759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	4.92321675559912	4.92351965829254	5.16393507319441	5.16351616715901	5.26693871847289	5.32043173991837	0.525491274747055	0.147164601779101	0.511947497171096
Merged-chr13-64375888-4	chr13	64375392	64376392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5372.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.45951215477924	4.36682643672055	3.97331644971067	4.37796193279205	4.08672043189203	4.0979834055701	-0.264473900660463	0.596349911752893	0.879911021114935
Merged-chr6-100833562-4	chr6	100833080	100834080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182939)	promoter-TSS (NM_182939)	-58.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	6.84159206481693	6.71612830536614	6.34539481969672	6.7193895651113	6.25218843645477	6.57432172502992	-0.216541086241664	0.472543539313329	0.820550293768681
Merged-chr5-73286806-4	chr5	73286300	73287300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2616.0	NR_040687	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	3.0833255862982	3.449312823857	3.11677765969592	3.30451390794363	3.09441294773766	3.41870021354014	0.167976033367696	0.800311780492952	0.952448512253924
Merged-chr5-121844154-2	chr5	121843654	121844654	+	843.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4843.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	2.82713304347265	2.57232489161881	2.82245103112552	2.59084722638017	2.55739895629018	2.65267221051178	-0.818207792638183	0.286044703344977	1
Merged-chr4-133609906-4	chr4	133609410	133610410	+	815.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 7 of 7)	intron (NM_001017968, intron 7 of 7)	-7742.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	1.92182088426931	1.92817466951653	2.1242308673923	1.85749028570354	1.82948139633766	1.93536426699407	-1.00680794417647	0.300113239023445	1
Merged-chr9-59292864-2	chr9	59292364	59293364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	B1_Mur4|SINE|Alu	1292.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	6.02628831242976	6.12528032929985	6.04632819252871	6.22781596027264	6.55740655787534	6.41405321677524	0.573284614970893	0.0444948965381252	0.265819310105135
Merged-chr11-78885184-3	chr11	78884711	78885711	+	669.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-35576.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	3.6647757779408	3.60502541243867	4.21047542990453	3.92379905832222	4.09289044663962	4.23544666796668	0.727528339754023	0.192893548387527	0.579935192015802
Merged-chr12-79016228-2	chr12	79015822	79016822	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9045.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	6.00821766614473	6.0621369705403	6.29165280381698	4.25087676449569	4.37687174492908	4.56701768818682	-3.77007889632052	1.55084886854e-18	8.11591400336329e-16
Merged-chr6-73247722-2	chr6	73247222	73248222	+	997.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	-783.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	4.2356043079119	4.43123058700977	4.27169140531013	4.61082746764516	4.93906576675336	4.60926252598338	1.03346827507977	0.0192603227341473	0.157520437788768
Merged-chr5-136962155-4	chr5	136961663	136962663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025562)	promoter-TSS (NM_025562)	86.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	6.70307169621419	6.74210693808817	6.93634285108695	7.12190844603424	7.11380532699073	7.03477603586851	0.464652796441163	0.0581109766939939	0.31143381730946
Merged-chr11-115177975-4	chr11	115177462	115178462	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 3 of 5)	intron (NM_012030, intron 3 of 5)	9354.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	3.57083230498351	3.40302158591293	3.65933998859362	3.64917303533039	3.33272952900328	3.46312107100213	-0.212327467976279	0.719046472615405	0.927652639255676
Merged-chr14-120325811-4	chr14	120325322	120326322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	19370.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.42455120425223	7.34093555854264	6.65926412294091	7.31159528889388	7.53233942791959	7.02539857492982	0.174637318726044	0.573449707312477	0.870156136738611
Merged-chr2-27741595-2	chr2	27741095	27742095	+	986.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 3 of 9)	intron (NM_001290481, intron 3 of 9)	31012.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.33742997536351	6.51180258047058	6.82346864584451	6.10130460779831	6.1760737344074	6.46803141888234	-0.514173941762635	0.0872765322542994	0.391699336343891
Merged-chr7-34235031-2	chr7	34234547	34235547	+	716.5	f0_balb.idr|f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4711.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	4.81246473237735	5.02150330120118	4.8726365300172	5.42519524544855	5.18204227246336	5.01519845033909	0.663573402470495	0.0817721851801894	0.378285105145633
Merged-chr11-83289759-2	chr11	83289259	83290259	+	677.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1940.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	4.06567029105051	4.01163375354227	4.18549122487536	4.15753744690833	4.12039757192768	4.11526985195579	0.136554926098946	0.773204843933805	0.944005820052589
Merged-chr8-123254192-4	chr8	123253698	123254698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020497)	promoter-TSS (NM_020497)	3.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	6.57637086667751	6.55709646372078	6.55179853179759	6.52927671545816	6.45263346988012	6.81406845501173	0.0560770705309933	0.83511030611126	0.961490201476466
Merged-chr6-116767879-2	chr6	116767379	116768379	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51121.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	1.65192041967878	1.75500075278146	1.74844911407919	1.90768035165592	1.78990051391456	2.03064796257596	1.76142821580715	0.0931572470688405	1
Merged-chr9-105481442-2	chr9	105480942	105481942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	13691.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.14358096896349	3.09198535887036	3.25535871249611	3.26741424301511	3.03122757586928	3.38059540398383	0.275979804411672	0.669693467805235	0.909732650958124
Merged-chr2-78059934-3	chr2	78059424	78060424	+	725.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	8747.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.36909410532486	3.48073934722295	3.45524538987019	3.24310062190783	3.37858183087047	3.36053089801766	-0.409222242079523	0.493046126377626	0.831208279358962
Merged-chr10-17416336-4	chr10	17415827	17416827	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-306901.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.78313459489398	3.95870249507441	3.91946568292265	3.63382443635144	3.68169046920891	4.20277829746312	-0.103281511880846	0.853809742959343	0.965833314193905
Merged-chr6-100357163-4	chr6	100356643	100357643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-69785.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	3.4685671437057	3.42792939635884	3.33823311519211	3.19133954391229	3.39237535351337	3.40957120150082	-0.312387601798983	0.605829181324355	0.883654434407364
Merged-chr14-64858541-4	chr14	64858050	64859050	+	861.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 5 of 9)	intron (NM_177338, intron 5 of 9)	91307.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.17873787771423	4.15113813082539	4.30966121794051	3.98304731662648	3.62111097718483	4.01951987783387	-0.999634324096805	0.0535355854950898	0.296735211689011
Merged-chr15-79400356-4	chr15	79399869	79400869	+	941.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	2550.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	4.84600868658816	4.50553666801381	4.62489416088635	4.48399519329268	4.69822836621471	4.33833877986177	-0.33942844830462	0.443958483618676	0.803884349333946
Merged-chr1-161070776-4	chr1	161070286	161071286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131028)	promoter-TSS (NR_131028)	19.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	6.66872565061541	6.93532603911652	7.04301467907982	7.13711767073625	7.29972586241102	7.2231646154413	0.512915239977262	0.0425229037214517	0.258511417611935
Merged-chr7-35646778-2	chr7	35646278	35647278	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019746, intron 1 of 5)	intron (NM_019746, intron 1 of 5)	704.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	4.9626610731397	4.7426711774651	5.04394394640391	5.34604240101761	5.06454693113452	5.03884110002174	0.518540377105127	0.175817334231984	0.555820962748093
Merged-chr17-27057116-4	chr17	27056634	27057634	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-170.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	6.670158631579	6.60960353943005	6.83194516345183	6.20897978004233	6.41029532570525	6.42499963071754	-0.562609741609135	0.0368738241996265	0.236634055530042
Merged-chr16-91486247-2	chr16	91485747	91486747	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	intron (NM_010508, intron 1 of 10)	1032.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	5.1861599168241	5.40201183603709	5.44351659824951	5.07426694349039	5.24932165135196	5.20271182129905	-0.332894068127714	0.347511910782511	0.735629954917807
Merged-chr11-117150646-4	chr11	117150145	117151145	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166506, exon 12 of 16)	exon (NM_001166506, exon 12 of 16)	35473.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	3.1687511454424	3.41308431919321	3.22407007247906	3.2114288472164	3.1091884118344	3.23819423512295	-0.385028160339825	0.54338226153108	0.857551302506722
Merged-chr8-95037185-4	chr8	95036695	95037695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173036, intron 8 of 11)	intron (NM_173036, intron 8 of 11)	-17908.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	5.87229215661348	5.76898065423906	5.75777597415597	6.02509268779099	5.88770491100005	5.94369935613123	0.263234697432649	0.377856129636731	0.760218641134828
Merged-chr16-38395311-4	chr16	38394802	38395802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134102)	TTS (NM_134102)	33112.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	6.68093966625483	6.40106759177914	6.42542912733341	6.12260957051592	5.956892777861	6.05424983468059	-0.781748766521339	0.00600374057941082	0.0698098443448317
Merged-chr11-32226502-4	chr11	32225996	32226996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-9.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	5.45815352838128	5.80427243571578	5.68950192219259	5.49433360477664	5.56245185797805	5.7763547718124	-0.0921623665266852	0.781816949547386	0.946286689231939
Merged-chr3-8990452-4	chr3	8989860	8990860	+	894.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13844.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.24102018640764	6.17504442577102	6.12586030834126	6.3593600043164	6.41792423266547	6.22962552001634	0.266051546276331	0.335088334930595	0.725339338581532
Merged-chr4-46087699-2	chr4	46087200	46088200	+	732.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48478.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	5.40939068448424	6.03419916811373	6.18796043871308	4.84458909713587	4.9868087319814	5.52033643907702	-1.4722935376863	0.000447285776431263	0.00962196351739723
Merged-chr4-129820710-4	chr4	129820205	129821205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-3.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	8.37627374112636	8.25425622944947	7.97015327443212	8.4387629135934	8.3824820098481	8.3655648022712	0.249230997667863	0.260884018394459	0.658505609057066
Merged-chr2-71027097-4	chr2	71026594	71027594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	RLTR30B_MM|LTR|ERV1	-8720.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.49773209186284	5.32108461439561	5.45132137234102	5.48331257439252	5.65198016814047	5.51424106147454	0.256880032662498	0.436353789530721	0.799472869647494
Merged-chr11-53737221-4	chr11	53736709	53737709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16415.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	4.56858945209373	4.30893191954423	4.47015428260453	4.55498530066654	4.50070582920314	4.40665778768142	0.0990453719404027	0.819760341036086	0.957288083214325
Merged-chr5-101929955-2	chr5	101929455	101930455	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 17 of 67)	exon (NM_172882, exon 17 of 67)	139966.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.37537783077203	2.40656702319811	2.29652080209257	2.43494166649223	2.41618246817938	2.62814880277269	0.806976297231425	0.32665265914103	1
Merged-chr6-17749190-4	chr6	17748699	17749699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083315)	promoter-TSS (NM_001083315)	29.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.94971899886393	4.65474967601104	4.77539272485161	5.00018287859201	4.93602375666825	4.63520286337718	0.168583012152786	0.679266511350062	0.913693374830142
Merged-chr1-36066427-1	chr1	36065927	36066927	+	631.0	f0_balb.idr	Intergenic	Intergenic	-1973.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.05331699414225	2.74412423814206	2.79472518502935	2.91697808566709	2.66680109038646	2.93049087711086	-0.168431461400768	0.819898849900488	0.957355966131823
Merged-chr5-100674155-4	chr5	100673555	100674555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027978, exon 1 of 7)	exon (NM_027978, exon 1 of 7)	201.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	6.38578483560707	6.18604495457507	6.32904773617195	6.14329912567467	5.65325246841634	5.84019084863415	-0.701582489612089	0.0245870934313547	0.185026939516701
Merged-chr6-124834699-4	chr6	124834154	124835154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013538)	TTS (NM_013538)	4478.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	7.70416749851448	7.77842966846622	7.53278833980714	7.25589923250157	7.41020260217781	7.17458091056307	-0.570906905012522	0.0150217818799375	0.132872587080455
Merged-chr1-136142528-3	chr1	136142035	136143035	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	11145.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	8.75830277726326	8.549416133764	8.47356644161307	8.76612090577285	8.97892914410152	8.31819407306113	0.168722801128103	0.502963914939406	0.836691193058519
Merged-chr4-109203273-3	chr4	109202724	109203724	+	759.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133885)	promoter-TSS (NM_133885)	-952.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.84134319325526	4.0394955700023	3.82696593870183	3.68184444014118	3.90361466675844	3.94643952356656	-0.194283496348001	0.711079278418816	0.924558647751225
Merged-chr18-60796740-1	chr18	60796240	60797240	+	621.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7109.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	2.21139521499926	2.07242426315146	2.08775353641392	2.43989130974349	2.39306488764029	2.4364825407525	2.16737033284267	0.0207727281733109	1
Merged-chr12-83862014-4	chr12	83861496	83862496	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	14816.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	5.78039671313704	6.41476503287118	6.37695653968554	6.63229835984416	6.75288978537489	6.54474165552078	0.697536585196871	0.0267198046409863	0.194537603815592
Merged-chr1-134362931-2	chr1	134362431	134363431	+	655.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	-925.0	NR_151737	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	3.63471545051039	3.78056842191052	3.66122471060952	3.76157511923954	3.80233056871876	3.67798399271611	0.186811138324561	0.727570324725496	0.930204882969987
Merged-chr1-181842460-4	chr1	181841958	181842958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133815)	promoter-TSS (NM_133815)	-57.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	7.88635868024523	7.88215241876304	7.98192218893045	7.70509676563936	7.62493202792029	7.78064229145685	-0.307538939539632	0.152299476271358	0.520263755512759
Merged-chr1-86582676-4	chr1	86582202	86583202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172974)	promoter-TSS (NM_172974)	83.0	NM_001360816	18582.0	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	6.30326904353912	6.22624885257601	6.3698820506121	6.3807268675768	6.49462184263884	6.09623523559759	0.082547541354269	0.772946712822738	0.943939973296461
Merged-chr15-76242618-2	chr15	76242118	76243118	+	931.3333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163575, exon 4 of 11)	exon (NM_001163575, exon 4 of 11)	822.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	5.12200225914858	4.79655165381503	4.84151246795116	5.11197102598034	5.38407264871707	5.16287552773366	0.627135991654665	0.101246803545465	0.424388898766361
Merged-chr2-27496648-2	chr2	27496148	27497148	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-int|LTR|ERV1	-18499.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.72274137086112	4.17545214158149	3.92555599264937	4.17229405380638	4.27478177461006	4.23611828332025	0.768396283839292	0.132340146589707	0.486643049206133
Merged-chr4-89349771-2	chr4	89349285	89350285	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-38753.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	2.38859217703569	2.3470481714058	2.57974771276122	2.18786140376355	2.11369562027905	2.27623352226834	-1.7948195045181	0.0473656500827143	1
Merged-chr1-60070877-4	chr1	60070386	60071386	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27021.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	4.70834279329222	4.69417625198941	4.56414617998854	4.7341644472261	4.39474728517687	5.00018742125639	0.138524480784319	0.753333086059866	0.938549578325581
Merged-chr17-71474801-1	chr17	71474301	71475301	+	949.0	f0_balb.idr	intron (NM_028887, intron 1 of 47)	CpG	542.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	6.9084973759543	7.03167789537745	7.09856858225397	7.48141120552118	7.38669618249948	7.53930141721546	0.680798910813576	0.00365317270224649	0.0486626175544528
Merged-chr16-33348192-4	chr16	33347709	33348709	+	813.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32527.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	5.87294446366311	5.9539356275951	5.95582302256192	5.90277347204668	6.29988447275991	6.21198099364044	0.389496312422415	0.197369219477421	0.585357590633181
Merged-chr10-121508166-2	chr10	121507666	121508666	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-31916.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.360117676228	3.35373124273854	3.54899915512228	3.13921831927299	3.34831120214536	3.4635735478621	-0.380317177869344	0.536936597991893	0.854250636315698
Merged-chr6-125350679-4	chr6	125350183	125351183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	8.20517829651244	8.23374371418861	8.15090278410528	8.68812947622863	8.74088163745811	8.69170459583226	0.708099487903394	0.000341558288567364	0.00775453808325054
Merged-chr19-34921730-3	chr19	34921227	34922227	+	895.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-631.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	6.33726129092315	6.64470158473612	6.57751515061335	6.57549845003167	6.76883282016793	6.45873525364685	0.145695342066674	0.599316488070236	0.880934255570735
Merged-chr9-63759328-2	chr9	63758828	63759828	+	882.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.05911558559072	3.17506488985525	3.25219097478087	3.1722234554848	2.92645468488669	3.15437924323543	-0.340535070392329	0.605621636097375	0.883581756351046
Merged-chr10-121483824-3	chr10	121483352	121484352	+	845.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7602.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.30147624398687	3.98167102614266	4.19420692263747	3.84004069139805	3.6165105585635	4.03473898211698	-1.01526892591278	0.0549788212725476	0.301265698156681
Merged-chr17-20946416-2	chr17	20945906	20946906	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016891, intron 1 of 14)	intron (NM_016891, intron 1 of 14)	952.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	5.69965010548198	6.13278559633129	5.95035987772953	5.90129571747298	6.05246907909911	5.78807548106525	-0.0261650164563716	0.934694357989234	0.985727536128156
Merged-chr7-133744611-8	chr7	133744117	133745117	+	837.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	15652.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	5.75013615127749	5.76667828387705	5.97234113204852	5.69761503660617	5.96519789863205	6.0761657204839	0.165641246096485	0.597564942581496	0.880433364120803
Merged-chr18-23814024-2	chr18	23813524	23814524	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	B4|SINE|B4	10054.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.77529246743008	5.17456585928592	4.84995205054937	5.21669030875118	5.44522007365246	4.91907096187467	-0.230332203165006	0.607565656724107	0.884614829803401
Merged-chr4-130794172-3	chr4	130793690	130794690	+	662.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR3|SINE|MIR	1653.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.7199621816116	8.17832267869116	7.87119742706274	8.18495359230795	8.45356834011041	7.79943220403602	0.34056270187905	0.20965987151241	0.60139887578615
Merged-chr8-70602466-1	chr8	70601966	70602966	+	774.0	f1_c57bl6.idr	intron (NM_133772, intron 2 of 16)	intron (NM_133772, intron 2 of 16)	5848.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	2.70172773936462	2.80558707801777	3.04339690984579	2.89539294665223	3.09400990172669	3.05803846041244	0.808110755893065	0.25735933605416	0.654680413499888
Merged-chr14-122048779-2	chr14	122048279	122049279	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14105.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.20728734571048	2.18325907257943	2.16670843613503	2.56104782186915	2.49369209659982	2.5781391666867	2.57104019436681	0.00576126771986003	1
Merged-chr10-67290184-4	chr10	67289683	67290683	+	807.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4902.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	6.46736947757052	5.93468963268559	6.15328321843911	6.30109816865931	6.58576926304288	6.48737967990862	0.425251762281649	0.166458567812911	0.541740701317194
Merged-chr19-42006890-1	chr19	42006390	42007390	+	684.0	f1_balb.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	25127.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.04276328339327	4.18158491278589	4.30233149001354	3.86986065810426	3.91341746229564	3.90987278085918	-0.818554139920869	0.098486999513109	0.418427687285513
Merged-chr9-58246251-4	chr9	58245759	58246759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 2 of 7)	intron (NM_008884, intron 2 of 7)	3527.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	4.36443567452751	4.17591524924365	4.62402757256276	4.39936694834368	4.295260853239	4.23084650766958	-0.20471995421853	0.659792577271388	0.905624311712053
Merged-chr6-134066295-4	chr6	134065792	134066792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MLT2B2|LTR|ERVL	30592.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.77416437835533	6.7395917899667	6.70895288456784	6.37652754534272	6.57174874354054	6.4987489260201	-0.404852899142474	0.117293135176673	0.457331522238446
Merged-chr2-128127451-4	chr2	128126965	128127965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	-110.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	7.45686215792087	7.44789587804749	7.51254740652634	7.39112735455863	7.41189042377856	7.79038500692228	0.0961683921596723	0.691336159943869	0.918275389711443
Merged-chr14-63410001-3	chr14	63409511	63410511	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7176.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	6.81498772862507	7.38966274094071	7.09057855105885	6.78522399529989	7.01504738447294	6.55475773360626	-0.479820071210433	0.103334375642676	0.428463201325997
Merged-chr1-144002149-3	chr1	144001605	144002605	+	925.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009061, intron 4 of 4)	intron (NM_009061, intron 4 of 4)	2044.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.45984315691344	6.71243179024088	6.42013682144472	6.50655996958968	6.67983729119697	6.34233507524787	-0.0264493072287855	0.924896430146226	0.983070278897208
Merged-chr3-95739559-4	chr3	95739070	95740070	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-1.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	5.9634802313662	6.10524748614693	6.15932846074206	5.46320488148011	5.5900217741482	5.71752384670911	-0.870879287112116	0.00482730762204551	0.0597724125915421
Merged-chr9-61232860-2	chr9	61232360	61233360	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60949.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	2.3658555953092	2.29727866390405	2.35629258702841	2.56243377806887	2.29221221339456	2.62282186016467	0.979596236663491	0.242026607727873	1
Merged-chr11-32567552-3	chr11	32567053	32568053	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	34287.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.71790307686841	3.54942314950142	3.87789804794481	3.31740009844767	3.47072451689329	3.75762176486108	-0.682567477868714	0.249509984493592	0.646404719775292
Merged-chr10-99203753-4	chr10	99203264	99204264	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59467.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.9100031226178	7.08353546998153	6.78175728789965	7.2870123476162	7.39946111866202	6.79198075852119	0.393598563632696	0.161993079490076	0.535246799754209
Merged-chr17-34437693-4	chr17	34437197	34438197	+	813.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001177, intron 6 of 19)	intron (NM_001001177, intron 6 of 19)	38240.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	2.85494025771795	2.94355603081626	3.00805769404902	3.06177098317681	3.08359072508346	3.25035816755282	0.903189733208809	0.177747069116074	0.55882263155115
Merged-chr8-70617800-6	chr8	70617320	70618320	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153074, exon 2 of 3)	exon (NM_153074, exon 2 of 3)	976.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	7.97412075592323	8.47489532998432	7.84925586447238	8.46660964819698	8.69498322299997	8.23652826558131	0.485313728922737	0.0720607653913427	0.352583333334285
Merged-chr6-125515675-4	chr6	125515157	125516157	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20897.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.25245954830258	3.87054957331969	3.62458819125301	3.83366467466873	3.65481736035541	3.69804156992512	-0.694077661820326	0.22342705533004	0.618110796286265
Merged-chr9-53705709-5	chr9	53705171	53706171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	CpG	561.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	7.31856319492629	7.31645090168454	7.58118008317193	7.50168736249047	7.72769074525959	7.61012931272503	0.314119119919008	0.181821819839378	0.564431800671352
Merged-chr2-75721737-1	chr2	75721237	75722237	+	560.0	f1_balb.idr	Intergenic	ID4|SINE|ID	-17074.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.04909685996158	4.14909260061287	4.00736004990148	4.21497627911484	4.36952692314538	4.39630671191473	0.708318102466407	0.130196716755368	0.482452300574832
Merged-chr2-145823863-3	chr2	145823376	145824376	+	856.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	37760.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	7.64865692299167	7.53733821498279	7.41547192147347	7.49243805590336	7.85367807247611	7.51456477887507	0.141918036758385	0.559897095512623	0.865168019835518
Merged-chr6-52825728-4	chr6	52825217	52826217	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	83903.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.49841087765382	2.51547000151076	2.57655555523317	2.40950629376017	2.3840276294956	2.32773513509422	-0.974435859188382	0.2329087093466	1
Merged-chr2-131204699-4	chr2	131204206	131205206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5654.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	8.49868215578758	8.66050790509557	8.08009302270577	8.09242010818199	8.4664724270134	7.94187953268499	-0.346263220654112	0.195240900380066	0.582885610090219
Merged-chr2-103566268-4	chr2	103565781	103566781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-29.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.13910719363316	4.09487384794201	3.92810320626777	4.06452706955368	3.63113288387779	4.23161393540214	-0.20398129984842	0.706685920522746	0.923092605686828
Merged-chr15-84853908-3	chr15	84853378	84854378	+	928.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	CpG	1221.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	3.52776251166032	3.44031480572808	3.33620494488272	3.91142740451636	3.95580886442498	4.00460863849986	1.75986235820157	0.00201936625481607	0.0311854913382955
Merged-chr2-29869078-4	chr2	29868557	29869557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207298)	promoter-TSS (NM_207298)	-437.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	4.91298321058263	4.63232195270518	4.44515742867913	3.72718043798646	3.8872815021077	4.19565115117631	-2.05084876821704	6.25120126786839e-05	0.00190950791151539
Merged-chr16-64770919-4	chr16	64770374	64771374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026273)	promoter-TSS (NM_026273)	65.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	7.18888501356547	7.15001729185218	6.94878140190414	7.21419080777734	7.15026107677547	6.87387610831198	-0.0165633098154204	0.947731756198927	0.988008807662239
Merged-chr8-14886451-2	chr8	14885951	14886951	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2085.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.39182059573706	3.5698100986389	3.63179834363324	3.92958167399811	3.76123853788722	3.80649584862101	1.03315882977684	0.0618492279711883	0.322857626162273
Merged-chr3-96082941-3	chr3	96082441	96083441	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21586.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	3.39657859489452	3.25728071393841	3.372009507374	3.52277396847892	3.24003247363887	3.27089321760556	0.0336890848995548	0.95622333682751	0.98982182968933
Merged-chr18-73812203-2	chr18	73811679	73812679	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	3213.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	5.71497439460516	5.72606708376562	5.43600333212706	5.49664951998327	5.59113786493212	5.12176335496897	-0.389851091820296	0.272421466302443	0.669663338532819
Merged-chr4-85591246-4	chr4	85590747	85591747	+	978.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	385791.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	3.05363324555743	3.04310093169457	3.18575782405718	3.5269683034308	3.28884854752081	3.42809747295225	1.35955292418731	0.0323873122821787	0.218757419369886
Merged-chr4-126019882-2	chr4	126019382	126020382	+	704.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4777.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	6.49582467389459	6.53754406303942	6.48049633681817	6.43700827422	6.79185326317222	6.72348495138164	0.249311858641697	0.355294684020886	0.742238515390658
Merged-chr9-43107049-8	chr9	43106534	43107534	+	872.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	6.58662861341561	7.01185852520853	6.62912327761222	6.52140322007459	6.58961750339447	6.55055901673765	-0.330906026631782	0.232148872245437	0.628428015141772
Merged-chr7-3617363-4	chr7	3616866	3617866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025348)	promoter-TSS (NM_025348)	-7.0	NM_025348	66091.0	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	4.93668500606919	4.83599204001131	5.28211099182096	5.12560402349141	5.03286042084938	4.87663798555915	0.0020933066665315	0.995735786115304	0.998961028701257
Merged-chr11-114878877-2	chr11	114878377	114879377	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11164.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.88949219516158	4.72009466539525	5.1819321276135	5.04841526258508	4.83268956658492	5.27463720481783	0.259439714387497	0.523321733377652	0.848160629021996
Merged-chr5-135743677-2	chr5	135743138	135744138	+	678.5	f0_balb.idr|f1_balb.idr	intron (NM_172541, intron 1 of 11)	intron (NM_172541, intron 1 of 11)	534.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	5.35438079196103	5.17971308670873	5.06758348140126	5.10193790084422	5.08008947348972	5.02465424702071	-0.293639988863273	0.418068672986647	0.788473936634102
Merged-chr2-32488849-3	chr2	32488341	32489341	+	993.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37371.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	2.49785688541146	2.25020038571494	2.38429109920819	2.58973165541396	2.31793351898897	2.65101961056737	0.866308922807035	0.307427480892598	1
Merged-chr6-72366599-2	chr6	72366099	72367099	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331167, intron 1 of 5)	MTD|LTR|ERVL-MaLR	373.0	NM_001331167	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	3.39607930542205	3.12234067571604	3.31557740985903	3.32455988497252	3.32132549657429	3.15223784168129	-0.0382331493284548	0.951778810609945	0.988956184730673
Merged-chr7-90136430-2	chr7	90135932	90136932	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	URR1A|DNA|hAT-Charlie	6219.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	5.92759813447096	6.58519699158132	6.00389276746309	5.98105109382063	5.72814256842882	5.99519780388896	-0.542333272905843	0.11307134029724	0.449240322945744
Merged-chr9-118041781-4	chr9	118041269	118042269	+	771.1750490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286507, intron 1 of 6)	intron (NM_001286507, intron 1 of 6)	1247.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	6.30638501697824	6.94888996214358	6.78855115377863	6.86669610865304	7.27651174219406	6.9486748435864	0.521134138203378	0.0864698003936156	0.389486231318788
Merged-chr19-46484750-4	chr19	46484253	46485253	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16895.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.87594064478583	6.67674260750754	6.67696812146864	7.16926854056994	6.93905463376277	6.78458178955143	0.353404997938619	0.179313356921545	0.560829416731617
Merged-chr4-131975328-4	chr4	131974828	131975828	+	969.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 10 of 20)	intron (NM_183428, intron 10 of 20)	53557.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	5.21353416972014	5.04755018562136	5.5889461892284	5.06364324531952	5.16542367117745	5.09580756240645	-0.364705604226896	0.337087087334013	0.726998843028656
Merged-chr3-126621492-3	chr3	126621038	126622038	+	871.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	24587.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.7112721636924	4.28265945096344	4.58725579554093	5.49223108559545	5.56256631808989	5.57508699756473	2.16782429391988	5.57166706063508e-08	4.25718340478717e-06
Merged-chr5-66088886-4	chr5	66088393	66089393	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9286.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.81548697439448	6.65171168538775	6.90900941828539	6.98610765928123	7.09132264889244	6.98094303439374	0.359715186113502	0.148256565599719	0.513762236213799
Merged-chr8-120162674-2	chr8	120162174	120163174	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163761, exon 12 of 12)	3' UTR (NM_001163761, exon 12 of 12)	14795.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	2.61580574468275	2.54204110100983	2.70226931750132	2.52695357771294	2.46609177902389	2.71482337902384	-0.292361747501058	0.705607619384074	1
Merged-chr6-113418791-3	chr6	113418337	113419337	+	894.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346511, exon 2 of 9)	exon (NM_001346511, exon 2 of 9)	503.0	NM_001033204	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	3.88155527045487	4.07534291083094	4.12399343117494	3.88502618757145	3.60891503577505	3.80866520841301	-0.819632849665573	0.119570494212133	0.462189722861664
Merged-chr14-63128562-2	chr14	63128062	63129062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6100.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.06475785063623	8.09243783083107	7.83264213878241	8.03355009753634	8.12613203759432	7.94566341098646	0.047561898505807	0.828411889601348	0.959754062320895
Merged-chr15-64115640-1	chr15	64115140	64116140	+	851.3333130000001	f1_balb.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-55192.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.88675248810134	2.5886505744097	2.99434204812489	2.73992589675974	2.51473289422898	2.71041271172668	-0.931995428393465	0.233068995514185	0.629455587763793
Merged-chr1-180850887-4	chr1	180850390	180851390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145943)	promoter-TSS (NM_145943)	-261.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	8.63085452957031	8.70579110537231	8.37631350655895	8.39126793458188	8.78899276803183	8.47789122541572	-0.0187929805792524	0.935444259022293	0.985852245513165
Merged-chr19-32881657-3	chr19	32881203	32882203	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124126.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.91989236495135	3.88859464027228	3.98041788418511	3.97511986056449	3.57504117428255	3.95353586945078	-0.277787861432906	0.603584356392896	0.882688060083171
Merged-chr5-123135888-6	chr5	123135443	123136443	+	988.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3314.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	7.2899367682773	6.85708405589045	7.0452996825354	7.30036408340982	7.45511994036486	7.2650882598786	0.401746286636841	0.11669207741118	0.456173597444018
Merged-chr2-167949393-4	chr2	167948892	167949892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17065.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.27379122926693	6.9808361789631	7.12484659021624	6.6386512711225	6.67254508817956	6.93707174657772	-0.590076188429102	0.0229010924316361	0.176701975060421
Merged-chr15-66559301-3	chr15	66558808	66559808	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172514, exon 2 of 10)	exon (NM_172514, exon 2 of 10)	1738.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	4.86028536668811	5.18720191185173	5.07577140154297	5.15381098529612	5.5510330320952	5.06979508069691	0.494492048709701	0.204344901061243	0.594889459362672
Merged-chr10-60287455-4	chr10	60286955	60287955	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2994.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.36213937505823	6.44935043674578	5.89406599486225	6.73693586420604	6.70968901676312	6.27134216105592	0.529576770947499	0.0960104627252186	0.413091358279855
Merged-chr8-94364873-4	chr8	94364382	94365382	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-21547.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	7.12936601170147	6.97978264494689	6.89021890823762	6.88858912814946	6.82124043665047	6.64832180289266	-0.327368668192392	0.196281938904245	0.584107420061671
Merged-chr8-10835827-4	chr8	10835348	10836348	+	825.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46606.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.80183653529339	5.23112585408534	4.96186065127122	4.78290422769083	4.75518707782148	4.55413273119919	-1.44825383307169	0.00098158779163763	0.0177595035804705
Merged-chr7-104353440-4	chr7	104352943	104353943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-85.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	7.30439290344808	7.48748719420927	6.95672420632543	7.48615134759394	7.8030722548484	7.04447392032932	0.319107201503393	0.289907652274678	0.687626804551505
Merged-chr17-32040476-4	chr17	32039983	32040983	+	976.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028244, intron 1 of 15)	RSINE1|SINE|B4	4321.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	3.38827072533642	3.58133043996136	3.31135114984401	3.40797352243344	3.49643320573258	3.75719967359685	0.431504432512869	0.473512273054967	0.82090428702971
Merged-chr19-55808449-2	chr19	55807949	55808949	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	RSINE1|SINE|B4	66639.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.63493136667752	3.41310148432054	3.57153026424165	3.4356847301897	3.29009624374892	3.83714910965106	-0.0344041900428866	0.955194524513328	0.98974202431386
Merged-chr17-43568959-2	chr17	43568454	43569454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	503.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.78711849461256	8.02184740144144	7.78592813504645	7.11637616853969	6.87864515465851	7.49323062554836	-1.01723630706315	0.00013199241231152	0.00358564304394937
Merged-chr7-104446522-4	chr7	104446022	104447022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-397.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	7.30041651398596	7.49886588824037	7.19256476788702	7.39871505177034	7.42122055556258	7.36672904051766	0.0787652901735291	0.73793660958218	0.933858424870961
Merged-chr13-54838747-3	chr13	54838269	54839269	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49364.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	2.37973568553315	2.23450633541367	2.44000380805393	2.58076917451527	2.27187431831324	2.70091576138106	1.07243017665242	0.211470035657851	1
Merged-chr5-117889861-2	chr5	117889361	117890361	+	739.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	23022.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.39978784103915	4.34946626070299	4.64143282354055	4.32583362744319	4.092238906267	4.43282967259061	-0.473358939640602	0.304656565950869	0.701027724333949
Merged-chr11-73200000-3	chr11	73199502	73200502	+	853.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	520.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	5.94103303092061	5.82273703925443	5.44640079982118	5.59886224869278	5.80250659418924	5.31005384709469	-0.299233156471434	0.40294071976879	0.778365878954155
Merged-chr12-79133240-3	chr12	79132783	79133783	+	797.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	B1_Mur2|SINE|Alu	2495.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	5.261989992841	4.95006938610586	4.8958149357215	4.25684918894022	4.02822444449492	4.23788618454633	-2.21014226917739	9.15877632574019e-07	5.01212806409559e-05
Merged-chr14-50871485-1	chr14	50870985	50871985	+	624.0	f1_c57bl6.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	-931.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	3.97044619820657	4.03963760909281	4.17292992421453	4.35984020419556	4.24424804760631	4.14775547491812	0.559710954262594	0.236523315760562	0.632745673713476
Merged-chr1-80655377-4	chr1	80654890	80655890	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	9962.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.81113492059049	4.60989147738539	4.74507300839895	4.70900476997224	4.72374714250378	5.05575057562895	0.241335722463918	0.55435634590184	0.862781415741733
Merged-chr1-34463889-2	chr1	34463437	34464437	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	4191.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	6.37039794575037	6.25559536621181	6.69514137722255	6.76718558387849	6.84366234122186	6.99197676512968	0.674640015754733	0.0144722596317167	0.129480799714849
Merged-chr2-168197771-3	chr2	168197274	168198274	+	820.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 9 of 11)	intron (NR_132310, intron 9 of 11)	9338.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	4.05368140895217	4.02636706665414	4.06476652883277	4.09151832981954	4.49857201208138	4.52513809670227	0.92916425555754	0.0538227635350897	0.29752889094966
Merged-chr7-73527434-4	chr7	73526931	73527931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	14315.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	6.05526807604727	6.302780589111	6.15770290111427	6.09728830797449	6.4737527625713	6.60326612978763	0.377585644529599	0.210694897397375	0.602954361763681
Merged-chr16-30596336-4	chr16	30595837	30596837	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3386.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.85617223779758	3.78747297146316	3.73651379227161	4.32098418647035	4.08729384585908	4.06923694035703	1.10524701735634	0.0293013232441639	0.205764579669203
Merged-chr10-94358884-6	chr10	94358451	94359451	+	918.130981	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	47002.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.08105383080198	6.94731734127264	6.62926054814827	7.29095394157082	7.0443019529032	6.98722280580015	0.313853307478979	0.24313168819796	0.640367862483409
Merged-chr1-87180485-3	chr1	87179993	87180993	+	615.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2821.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	2.77669486284764	2.89895279531852	2.74973879585096	2.78669993733138	2.68412768154885	2.88394028794795	-0.157763910505847	0.827254746795725	0.959401967627617
Merged-chr4-20033508-4	chr4	20033018	20034018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-8534.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	4.51001896423097	4.6122600854287	4.44555245143189	4.76041179937499	4.5397346766837	4.513627463114	0.197318143969934	0.641547530961595	0.899095902698814
Merged-chr17-35516921-4	chr17	35516409	35517409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	-85.0	NM_025674	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	3.92381905837434	3.69171986985867	3.9319523839603	3.63700634806958	3.63109261491658	3.70238463332353	-0.648111492733347	0.228886026378689	0.6242878186291
Merged-chr7-128128102-2	chr7	128127602	128128602	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	3.39634471967392	3.54978452439296	3.52755260372912	3.526649763975	3.61148949344011	3.65063362026123	0.37469384590789	0.507221706224473	0.838904804247997
Merged-chr10-57744587-2	chr10	57744087	57745087	+	780.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40336.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.10097558686106	6.1094768062447	6.30132856208089	5.78054856644616	5.92536877210536	6.68450956268298	0.0252540753039507	0.944362590810506	0.987700332248508
Merged-chr7-80995895-4	chr7	80995375	80996375	+	797.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	L2c|LINE|L2	2191.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	5.4086188827235	5.60310287787977	5.68738597296215	5.91075845887339	5.82067106626868	5.64132142733878	0.433698590698196	0.177836637560125	0.55892688546374
Merged-chr19-29805885-6	chr19	29805336	29806336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172836, exon 1 of 8)	exon (NM_172836, exon 1 of 8)	173.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	6.8138573511393	6.94088676691032	6.98060917839844	7.08900715730736	6.62651556345274	6.62997985543284	-0.167519332207233	0.543956510335114	0.857551302506722
Merged-chr8-68908212-1	chr8	68907712	68908712	+	621.0	f1_balb.idr	Intergenic	RMER15|LTR|ERVL	27657.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.80646433064745	4.89884321507852	4.96454136386812	4.95146024392905	4.87808595680451	4.88498088518647	0.0391260723409042	0.917818513353158	0.981747877135909
Merged-chr4-43509386-4	chr4	43508961	43509961	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-714.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	6.22378425826823	6.32230570375118	6.04874764048541	5.69884162380395	6.15626808782404	6.06455174739959	-0.369846493013524	0.235785819190743	0.632125090802053
Merged-chr11-69982536-1	chr11	69982036	69983036	+	583.0	f0_balb.idr	intron (NM_026017, intron 1 of 7)	intron (NM_026017, intron 1 of 7)	-1301.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	3.91487468003892	3.73680349524501	4.25015095772418	3.96590304530146	4.09909955854668	4.4740263480304	0.616162381807616	0.249240936927391	0.646150295359371
Merged-chr13-62653255-4	chr13	62652806	62653806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	4.73994050402427	4.90844480496156	5.01155650005797	4.5531307472639	4.72656281442326	4.90519212800217	-0.354180600076858	0.382062603636201	0.763758051205099
Merged-chr11-95337445-3	chr11	95336940	95337940	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	CpG	422.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	5.19996331885332	5.32087765889023	5.45467595249848	5.05600497588465	4.98782096023599	5.34614817120502	-0.401049833143711	0.271723040362472	0.669138794947484
Merged-chr4-58304747-1	chr4	58304247	58305247	+	794.0	f0_balb.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18785.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	2.02406041765487	2.08338881906564	2.15380864456171	1.88725784659079	1.75696417222843	1.89269746373183	-2.30547639305488	0.0315749504273077	1
Merged-chr16-32165485-4	chr16	32164997	32165997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347182)	promoter-TSS (NM_001347182)	97.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	7.10472240953875	7.36265979167305	7.29735109563751	7.52416133486943	7.48006184906974	7.59021467662361	0.399428936686467	0.0862942560295943	0.3891526548233
Merged-chr2-150784548-3	chr2	150784046	150785046	+	581.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	3.48869575564597	3.29650497290875	3.27138589368283	3.18112833903821	3.32111257519724	3.61131705610069	0.0718983598018463	0.908985440702624	0.979384717565381
Merged-chr3-8962827-3	chr3	8962329	8963329	+	720.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1317.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.96842165631793	2.63957359126507	2.80266996168218	2.62805240591469	2.69836404444061	2.5548199857555	-0.963882147669724	0.216148067157969	1
Merged-chr15-97784874-4	chr15	97784366	97785366	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	CpG	501.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	8.02834486365911	8.18135259000151	8.11284761842134	8.0027611081235	7.99078828073754	7.77533227357033	-0.251191888743132	0.246415410498547	0.643485268781217
Merged-chr13-30003334-4	chr13	30002848	30003848	+	825.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17285.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	2.69874410569712	2.62508274023522	2.66625834230374	2.70677851156285	2.63283723335033	2.86122138311764	0.368510521855154	0.618765709772287	1
Merged-chr1-180293270-4	chr1	180292769	180293769	+	966.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36969.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.92778478968458	3.73558236364928	3.86871082479958	3.97513096528357	4.19019044131869	3.88735774278592	0.571622499016166	0.26681760148284	0.664273801214296
Merged-chr4-150570487-3	chr4	150569987	150570987	+	931.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	81687.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.4184780895826	7.63972478621172	7.07034436581457	7.60902348469437	7.8839879834431	7.38015128232538	0.353015898183333	0.203017311774087	0.592912304871651
Merged-chr3-16180655-4	chr3	16180180	16181180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-2485.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	6.45318346145606	6.87938383482162	6.38029733499393	5.93059249660605	6.23465009935397	6.40248220915423	-0.651610829557688	0.0374314601059749	0.239051111558674
Merged-chr6-125313142-2	chr6	125312642	125313642	+	750.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 2 of 9)	intron (NM_010736, intron 2 of 9)	743.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	5.6571000791129	6.02366990790127	6.36404163113449	5.75954486046853	5.99920789828945	6.03587734131879	-0.174596045131209	0.609271516104186	0.885075932051836
Merged-chr5-120579479-3	chr5	120578964	120579964	+	823.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9149.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	3.53007582536076	3.41411421763193	3.29574071068645	3.32046377924789	2.97884221347709	3.36803640083025	-0.774923811170351	0.235291514313437	0.63152659953927
Merged-chr4-105275353-4	chr4	105274854	105275854	+	875.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	118007.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.71200748245379	3.64282538582848	3.55008730316018	3.63756235772777	3.60229851981065	3.72735024888168	0.0414145946971907	0.939756485784658	0.986731489878728
Merged-chr8-122893717-3	chr8	122893331	122894331	+	652.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	45457.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.25354005754405	3.03496482323908	3.07425363042288	3.02498985387931	2.7133722677246	3.14682082111074	-0.71719443236397	0.318818821671437	0.712819123861698
Merged-chr11-82023907-4	chr11	82023424	82024424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11653.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	6.54880494122312	6.55819006793484	6.04564683418386	6.30742884725752	6.19980612936983	6.36510396860747	-0.215672798142573	0.471319422590385	0.819936159625774
Merged-chr15-80035662-3	chr15	80035140	80036140	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20832.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	6.99314874614388	6.82410237894123	7.01979235579804	6.34974502977621	6.45881010283844	6.85114062057553	-0.603776062535673	0.0299530920762667	0.208737565277295
Merged-chr5-140597342-4	chr5	140596814	140597814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10027.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	7.35378196843086	7.23528430089594	6.63313422012858	7.06971392438827	7.03800597062584	6.18218320810444	-0.430024212692737	0.231392385366855	0.6272788688866
Merged-chr11-21236577-4	chr11	21236072	21237072	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12D|LTR|ERVK	-2460.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.39326326310588	4.68484076840773	4.73281185337436	4.72423036935624	4.92374320072867	5.07643480053607	0.699976411895186	0.0931772424322338	0.40657919757719
Merged-chr15-30608248-4	chr15	30607730	30608730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-430896.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	5.01503589443929	4.88106500758302	5.02784806120976	4.76977545844104	4.87102891727047	4.4502635553666	-0.559525729066374	0.174460785815325	0.553706872110521
Merged-chr11-97412263-4	chr11	97411766	97412766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37894.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.96215091784209	4.77077927732422	4.85281292582597	4.52888037468528	4.54424529140487	4.6074486188282	-0.720064976147373	0.0742542859304365	0.358405396119251
Merged-chr5-24416264-4	chr5	24415751	24416751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310474, exon 4 of 10)	exon (NM_001310474, exon 4 of 10)	2800.0	NM_001310474	171209.0	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	2.7119318113854	2.96931672312505	2.94515651209077	2.58898420358011	2.4518632026693	3.1818111748826	-0.454178820694455	0.595640391507025	0.879568440346791
Merged-chr13-34254911-4	chr13	34254418	34255418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90264.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	7.78876206631775	7.80859935077529	7.48549622651507	7.51871937259163	7.91393670182476	7.44608459534988	-0.0799869147000648	0.756208467017933	0.939545863427369
Merged-chr11-79225524-2	chr11	79225024	79226024	+	732.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17500.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.11312954067209	5.76663468619587	5.68518868460743	6.03380254100047	5.99529067225254	5.77564361588916	0.120615068765847	0.70753113053255	0.923436131070566
Merged-chr7-139974529-3	chr7	139974040	139975040	+	974.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347613, intron 5 of 5)	intron (NM_001347613, intron 5 of 5)	4215.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	3.25545238093827	2.990194135458	3.0828224936291	2.79116319338985	2.79376587454287	2.97795156712774	-1.27665134524762	0.0713678312667776	0.350548745518577
Merged-chr7-100159705-4	chr7	100159223	100160223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026010, exon 1 of 2)	exon (NM_026010, exon 1 of 2)	446.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	7.21569798417869	7.30397038340569	7.11161243910537	7.10095826538101	7.15892580018817	7.13122681873086	-0.129620718930956	0.580413255449456	0.872822709452727
Merged-chr18-36512424-4	chr18	36511908	36512908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	3397.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	7.49088446422822	7.29611386837623	6.94114363401474	7.44198411077944	7.53798423871321	7.11297984842175	0.166707156417534	0.54395418622772	0.857551302506722
Merged-chr1-67386154-4	chr1	67385653	67386653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	263126.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	3.81624631126479	3.74426203511844	3.61409421861425	3.8347212867648	3.73645985928018	3.62973534181672	0.0224082647392139	0.966969350952744	0.992418870149749
Merged-chr5-115326544-4	chr5	115326084	115327084	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-593.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	5.11096448621789	5.07380817769643	5.34458771614125	4.9530309421809	5.02863655129067	4.95292893332579	-0.402530392319151	0.276202403277945	0.673531726509326
Merged-chr5-149285440-2	chr5	149284940	149285940	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 4 of 4)	intron (NM_009663, intron 4 of 4)	20436.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.55122837482319	4.22223476268842	4.28869607523828	4.63309081555295	4.34634001690597	4.76621179459736	0.546762546000825	0.23537743492378	0.631579671239531
Merged-chr7-126503536-4	chr7	126503022	126504022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183020)	promoter-TSS (NM_183020)	-85.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	8.12790581587635	8.26581338841163	8.27630531135425	7.93657001338968	7.89589757611135	8.01413830980364	-0.391610377447961	0.0613107831030308	0.321053973595783
Merged-chr11-107432320-4	chr11	107431832	107432832	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	38388.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.3748134298326	5.14394637759709	5.02354340019718	5.02011599494848	4.5068165027094	4.56150305527765	-1.03782798556593	0.0139549133225676	0.126460512714464
Merged-chr4-142097030-1	chr4	142096530	142097530	+	670.0	f1_balb.idr	Intergenic	Intergenic	-12726.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	5.77535015016251	5.6110366195994	5.64064058570477	5.83965926282861	5.75718335583658	5.85790917725731	0.245983842708528	0.424901500168724	0.792848465017231
Merged-chr12-52637943-4	chr12	52637434	52638434	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35612.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	2.80179926627955	2.35708007706716	2.60892469109267	2.60534350424731	2.55097083741693	2.86551654905225	0.402861232644761	0.626795995820297	1
Merged-chr4-107254533-2	chr4	107254033	107255033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029985)	promoter-TSS (NM_029985)	630.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	5.01703151687219	4.67354613533935	5.27038012776817	5.0309901464995	5.15634972216636	5.1147771318201	0.223712339522176	0.574728257357579	0.870862343796639
Merged-chr17-53475684-3	chr17	53475150	53476150	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3584.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	4.13526334371979	3.6759739748597	4.23582604453369	3.80332750169111	3.89261541662517	3.55856031710965	-0.824138341925079	0.154566860964719	0.523877774629424
Merged-chr7-19002973-4	chr7	19002457	19003457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	6.08349999170638	6.52531758802412	6.42519634889291	6.81970381240116	6.82199129243314	6.79971370222804	0.727693974439469	0.00888860885665806	0.0927751336860015
Merged-chr5-101949448-4	chr5	101948947	101949947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	120474.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.18915522474242	5.83591977785062	5.71732369037527	6.52674313536026	6.5164415956196	6.09177513040845	0.776999244113487	0.0160024781382582	0.138918539481293
Merged-chr16-4475257-4	chr16	4474748	4475748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	47827.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	8.05383644551571	8.36179129558569	8.16476335898006	8.04502287585995	8.36539368291666	7.86980799929492	-0.116704505298426	0.63363966167445	0.896059441151508
Merged-chr2-166900982-4	chr2	166900486	166901486	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5110.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	5.5467506227276	5.19669682670329	5.70073012602181	5.73500717029662	5.83238226372551	5.90686140523548	0.623888733169556	0.0651646932148148	0.332860707068093
Merged-chr10-25032789-1	chr10	25032289	25033289	+	544.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-105319.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	2.32252227652664	2.37085765802703	2.50439250879977	2.6415509450539	2.45411623178461	2.76295597669319	1.36028831854413	0.0970624895629978	1
Merged-chr2-157134436-2	chr2	157133936	157134936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	786.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	6.7487240755868	6.91912881691654	7.42974338489763	7.23940572530333	7.7478989575241	7.27375004538	0.581343426886167	0.0563111121719974	0.305904225475456
Merged-chr12-84769988-2	chr12	84769488	84770488	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	3124.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	4.05968717392192	3.73761587427111	4.01327412159743	4.03069873772546	4.3173734827795	4.22154054139826	0.744265251771244	0.140279481099589	0.500590732849733
Merged-chr3-58502104-4	chr3	58501615	58502615	+	745.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23706.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	3.61079739313874	3.67023727056267	3.59914111298546	3.41763205844692	3.37579744003045	3.33558779351113	-0.940787272208673	0.104597496437673	0.431628073972717
Merged-chr12-54806192-2	chr12	54805692	54806692	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10530.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	3.91970955134697	3.9419061422543	3.95101467585658	3.72961693869434	3.34392899012302	3.77408171143529	-1.05504182080852	0.0629544954663189	0.326435948075121
Merged-chr7-116608594-4	chr7	116608106	116609106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	104237.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.03127489602464	5.32575268489962	5.01946236009888	5.48860792461549	5.70877468621338	5.29802925350633	0.746961206259062	0.0419759348859205	0.256440162321694
Merged-chr14-25789402-4	chr14	25788911	25789911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20555.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	3.80293214703375	3.47210650921663	3.60512408063843	3.62396775657757	3.32433333826054	3.62269922109625	-0.390639704029688	0.508105250799844	0.839623896980446
Merged-chr3-55293210-4	chr3	55292716	55293716	+	673.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	50852.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	2.76846780546486	2.99976820267532	3.01102520227109	2.76682516477897	2.70701564578213	2.71995535750747	-1.02087408322064	0.162729923892547	0.536188662408322
Merged-chr4-139199279-4	chr4	139198787	139199787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5176.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	8.21106992453505	8.20610157270167	8.01717011274473	8.04254070354869	8.52223199480816	8.08046324624472	0.127977524509485	0.598351501499811	0.880780437003557
Merged-chr12-95748961-4	chr12	95748462	95749462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	56736.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	4.70560524377528	4.92955978819214	4.82734598391159	5.07573786157211	4.73407896767294	4.81652285200266	0.12752674959589	0.750179681204138	0.937550343416037
Merged-chr3-86920704-7	chr3	86920210	86921210	+	906.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001195499, exon 1 of 18)	5' UTR (NM_001195499, exon 1 of 18)	174.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	5.1224003643142	5.11739670944397	4.94182734837468	4.15572045075846	3.87176822840788	4.2125306495661	-2.58729973666734	2.16262280635319e-08	1.82133115861373e-06
Merged-chr2-174343696-4	chr2	174343151	174344151	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	13562.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	6.99191124871587	7.38904150432522	6.703295689367	6.96852543586451	7.36544483110858	7.16808998288151	0.166488172814693	0.572300260986989	0.869807909725036
Merged-chr18-36365215-4	chr18	36364723	36365723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	16599.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	6.28431181977682	6.35439719409365	6.50256671590133	6.22247501204512	5.9996850101488	5.95445339563326	-0.522423026963611	0.0693380976227865	0.344625388370711
Merged-chr7-98968199-3	chr7	98967694	98968694	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	129349.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.9085113198358	2.69006495011059	2.85052790012138	2.61810123271787	2.61080275605112	2.54422170493287	-1.24882846711208	0.1056293624952	1
Merged-chr1-171006550-4	chr1	171006062	171007062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12364.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	6.8112487233136	6.58513777963857	6.6407525156809	6.90873644654282	6.96151540724812	6.91469431870256	0.381058663697791	0.129678273457277	0.48172009397354
Merged-chr14-20696314-2	chr14	20695814	20696814	+	661.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028428, exon 2 of 3)	exon (NM_028428, exon 2 of 3)	1346.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	5.31965516442244	5.41242892564095	5.33977966072592	5.6702367106725	5.57870886864198	5.37199245894764	0.372590889798842	0.265470106736196	0.663161206920213
Merged-chr7-19308035-7	chr7	19307439	19308439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347586, intron 1 of 4)	intron (NM_001347586, intron 1 of 4)	2106.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.89090645894689	6.03436270319733	5.95034548931148	5.73732093855303	5.81235861540812	6.09896703630547	-0.13862836692908	0.651654348693536	0.902886604713875
Merged-chr7-66113902-3	chr7	66113413	66114413	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	4398.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	3.72877049304631	3.68696554133929	3.70634179028435	3.99561033385053	3.84337639577755	3.72342750391588	0.502190305991587	0.342322888989511	0.731283521951228
Merged-chr4-34387108-4	chr4	34386624	34387624	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163491.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.79755582758249	6.8083410955212	6.06285313750962	6.38821381900626	6.56896635534035	6.64711645434145	-0.122318443927152	0.703892388007187	0.922281360858231
Merged-chr6-120363284-4	chr6	120362767	120363767	+	834.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-832.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	7.51903768358821	8.0726394722338	7.760110257559	7.76287305937895	8.04447234531701	7.89081809752145	0.14164068417131	0.578977437811922	0.872437129840066
Merged-chr1-34463464-2	chr1	34462964	34463964	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 4 of 14)	intron (NM_011206, intron 4 of 14)	3718.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.28285300857128	5.09523977601821	5.58056599591321	5.89230141250892	5.62555350964491	5.95675756173322	0.948921848417894	0.00675832523458668	0.0762090698088479
Merged-chr1-181257809-4	chr1	181257308	181258308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45830.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.32374393147332	6.38530272311088	6.55272467520648	6.01494560988609	6.41834121795801	6.11511541944005	-0.351066107688792	0.2352822750765	0.63152659953927
Merged-chr6-40471407-4	chr6	40470906	40471906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286664)	promoter-TSS (NM_001286664)	-9.0	NM_212468	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	6.79790553941714	7.38435590840928	7.0470054190132	7.0876719295164	7.14564510192582	6.91016416388373	-0.0719448703148776	0.795922279535317	0.951374777848283
Merged-chr9-55244307-4	chr9	55243807	55244807	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	35372.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	2.16785264387269	2.17265839972694	2.38019822992654	2.21298248923992	2.13480301258122	2.26299388411938	-0.263613306334084	0.761356991126865	1
Merged-chr13-53377402-4	chr13	53376905	53377905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-44.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	6.31954858478998	6.30081699254582	6.26383340662517	6.44504355072694	6.51666193813084	6.15321043109893	0.158668821180188	0.572364777485277	0.869821350519514
Merged-chr5-136988995-1	chr5	136988495	136989495	+	625.0	f1_balb.idr	exon (NM_011962, exon 5 of 19)	exon (NM_011962, exon 5 of 19)	-1036.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	3.18466772476437	2.83380640195053	3.05433097067144	3.20774135056712	2.69060986840203	3.12750751642253	-0.0202757397727505	0.978455926150119	0.995146803081243
Merged-chr13-30624741-2	chr13	30624241	30625241	+	985.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045975)	TTS (NR_045975)	9698.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.37401320815427	4.09017061551825	4.14157303291356	4.34176759661025	4.6595000168377	4.79202063367332	1.01416371529651	0.0303492071917336	0.210462873882955
Merged-chr8-115709185-2	chr8	115708685	115709685	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2291.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.61438593104088	5.42466727833039	5.4063081012903	5.87808049827217	5.7732758932008	5.72890484163694	0.566420939508447	0.0764772406068221	0.364240416166104
Merged-chr17-71179058-4	chr17	71178571	71179571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-4461.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.53200598959075	7.74628226923151	7.57094291900442	7.34922538338732	7.752853756826	7.42402639052458	-0.134865074989664	0.58487354709612	0.874754719025748
Merged-chr13-44926477-4	chr13	44925952	44926952	+	749.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 8 of 9)	Lx7|LINE|L1	75644.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.30933487207759	3.1100712295612	3.41396746369789	3.19331617519885	3.15491035881944	3.37807560898776	-0.157892363378771	0.803141744852375	0.953422605427866
Merged-chr12-11217891-3	chr12	11217366	11218366	+	640.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8918.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	2.59628391407456	2.90731869608283	2.91085408968729	2.51040372003863	2.48612597516983	2.8083681410831	-1.14068745007297	0.155279796256223	0.524873107662021
Merged-chr11-76856752-3	chr11	76856253	76857253	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9745.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	3.48993505385825	3.25307913479448	3.25463562569824	3.05074512931523	2.78552023079071	3.3266713784217	-1.17051489146508	0.103272432405377	0.428371806250717
Merged-chr4-44300943-4	chr4	44300444	44301444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010790)	promoter-TSS (NM_010790)	27.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	3.90195241510053	3.93929438916363	3.70333258037082	4.00553660289743	3.93877085896876	4.080081270207	0.443150308015007	0.386334916075937	0.7670957276677
Merged-chr9-32695330-2	chr9	32694830	32695830	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-712.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.77442740145811	7.0538512050358	6.49353325018557	6.57308263707987	6.83306734118111	5.93647915161931	-0.449104922053886	0.199813125420168	0.588407790910296
Merged-chr6-124730361-3	chr6	124729863	124730863	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	2791.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	6.98963164974075	6.67548737332889	7.16646557839525	6.84816175246168	7.12243943612406	6.94450412980199	0.0449168434492579	0.869004180968637	0.969772902205443
Merged-chr1-55808886-4	chr1	55808373	55809373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122368.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.41958662301714	4.29111052771809	4.44275289016781	4.82671293996556	4.91349107090101	4.90497247521376	1.20351309933661	0.0034182455200787	0.0464064893513964
Merged-chr3-40799964-4	chr3	40799450	40800450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173169)	promoter-TSS (NM_173169)	-1.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	7.13354520751388	7.28582517590198	7.12674030537587	7.38559806196052	7.4289944739269	7.33906852284108	0.29721954081551	0.198154286413254	0.586428434481221
Merged-chr16-35922552-4	chr16	35922074	35923074	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-15896.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	4.4530830987262	4.25815453491737	4.8278443962087	4.85932672887583	4.7774044892085	4.49963670040118	0.489206549776197	0.281012245295368	0.679170062348582
Merged-chr6-54088350-4	chr6	54087851	54088851	+	758.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	48419.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.32706345737092	4.55633405261385	4.33610557401958	4.4425891736197	4.68092681730155	4.44957774850184	0.302889716359718	0.493462880011145	0.831321147448556
Merged-chr17-53584105-4	chr17	53583610	53584610	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190846)	promoter-TSS (NM_001190846)	-16.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	3.97239283664109	3.70970170258345	3.89139952488451	3.94935663323343	3.82323798408657	4.00875078470313	0.195303665944583	0.705549088716452	0.922833138890237
Merged-chr17-73108787-2	chr17	73108287	73109287	+	889.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081071, intron 1 of 5)	intron (NM_001081071, intron 1 of 5)	802.0	NM_001177967	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	4.51725178026848	4.49827341984954	4.31699173586097	4.40901368231557	4.78563884617439	4.52070401082762	0.339318660351545	0.443655597778272	0.803884349333946
Merged-chr15-6434064-2	chr15	6433564	6434564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 10 of 13)	intron (NM_001008702, intron 10 of 13)	-11269.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	2.8292797665824	2.68946314170056	2.9746769561558	2.62974244791918	2.69664727410867	2.87377839176418	-0.509854448185569	0.491357479526564	0.830486962349103
Merged-chr7-81855140-4	chr7	81854650	81855650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3851.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.94521823530309	6.65397262724897	6.57988842888442	6.76862426691587	6.54655725188855	6.91580444982616	0.00189484290720171	0.994563721387404	0.998957752458935
Merged-chr15-101263967-2	chr15	101263467	101264467	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2879.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	4.58959834078095	4.2262453083875	4.63741720345879	4.78599495905514	4.41855654589709	4.95284770548876	0.567483682846307	0.218037759601116	0.612177281039602
Merged-chr10-120978682-7	chr10	120978184	120979184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	646.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	7.13855260106191	6.699670003687	6.44820009879576	6.89096255771633	6.18821926475746	6.45045916513521	-0.405953466708216	0.231232226309839	0.627089860073954
Merged-chr2-71212197-2	chr2	71211697	71212697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347173, intron 1 of 17)	CpG	251.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	5.78124039573133	6.14890090814814	5.93427781558754	5.81800150147927	5.54343985428246	5.80126940808098	-0.442997662451111	0.168542661154172	0.545164589147318
Merged-chr1-170868682-4	chr1	170868160	170869160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-889.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	6.60786471877614	6.74711134664702	5.91120764198522	6.55186641527203	6.73214386017644	6.10443703802185	0.0251183887155821	0.943976053574238	0.987495247303971
Merged-chr14-70074949-4	chr14	70074436	70075436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2509.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.22285193509119	6.64290221603019	6.73441428276714	7.36693008951476	7.25288806703089	7.32713194858127	0.625207420188169	0.0250104554716672	0.18702884684879
Merged-chr16-33875962-4	chr16	33875471	33876471	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 4 of 15)	exon (NM_010580, exon 4 of 15)	46306.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	3.80861933963269	3.50872660974413	3.50709726285542	3.70216809595559	3.60371991705722	3.40278309079655	-0.140662197100558	0.810696968283984	0.955095234253787
Merged-chr4-133632216-3	chr4	133631720	133632720	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1209.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	6.27547057526301	6.48396525368818	6.74098745308993	6.01214127180307	5.71697749754866	6.33237365531477	-0.794937825682441	0.014754566847789	0.131150304269932
Merged-chr17-5250083-4	chr17	5249585	5250585	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	168682.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.44256190751831	4.49512984808022	4.19587831508391	4.28303073223827	4.41948070158268	3.70399273308994	-0.617234012063389	0.56284801334921	0.865755360453189
Merged-chr2-171358428-3	chr2	171357962	171358962	+	916.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	604337.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	2.980794486666	2.63361963848412	2.98124240022277	2.73695827834421	2.73187076436546	2.68858474442274	-0.785167905037335	0.297867811612089	0.694689926124663
Merged-chr11-86995869-4	chr11	86995374	86996374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2112.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.39345270220816	5.6900586338402	5.72140397297077	5.61232729605764	5.68932163863124	5.75772492715403	0.148866704928976	0.647804841536553	0.901538008768873
Merged-chr17-50508892-4	chr17	50508377	50509377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013880)	promoter-TSS (NM_013880)	-670.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	7.40820066132417	7.35792171296454	7.44647707387328	7.38014663822309	7.04928676050897	7.19242910750043	-0.284039765135865	0.236305430660146	0.632720263621021
Merged-chr3-51184970-4	chr3	51184483	51185483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-39464.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	7.58533451626957	7.90007058311426	7.55295977244336	8.18522819638279	8.67612120809945	8.22899342981602	0.983226885757113	0.000127413155503933	0.00348056265370035
Merged-chr11-116694742-3	chr11	116694179	116695179	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009180)	promoter-TSS (NM_009180)	-19.0	NM_009180	20446.0	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	3.96449140723638	3.59161101792146	3.52950457042949	3.00039770549228	3.02564271665081	3.31668839546042	-2.53110037692259	0.00027827019570966	0.00654261272806143
Merged-chr12-4545637-4	chr12	4545147	4546147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	21534.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	4.44253298502499	4.35381680464994	4.43603981460754	4.22536550821017	4.46485395073142	4.97237315814147	0.425083693775002	0.373762406691461	0.757546812967132
Merged-chr17-22867220-4	chr17	22866743	22867743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110254)	promoter-TSS (NM_001110254)	-109.0	NM_001110254	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	6.0731308705957	6.48049428289936	6.02950751369179	6.17609803162367	6.7227323904314	6.33039538175857	0.363330589485545	0.263873411766157	0.661864470315546
Merged-chr6-72394564-4	chr6	72394040	72395040	+	970.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	6.77566453482147	6.87176996085967	7.13446362195395	6.95937438707799	7.44736066254554	7.39200668789661	0.538839885891993	0.0490862641604163	0.281538227349247
Merged-chr19-11965554-4	chr19	11965045	11966045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033174)	promoter-TSS (NM_001033174)	-299.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	5.763011633945	5.56232983207918	6.0471636014427	5.98627017770303	5.77449362734108	5.9541565602986	0.196166272209414	0.54530623253233	0.858059274547204
Merged-chr18-34372401-2	chr18	34371901	34372901	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007874, intron 2 of 4)	intron (NM_007874, intron 2 of 4)	1014.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	5.23219478261078	5.12107389626671	5.63434690805645	4.96276541141553	4.79098496664957	5.13909019278145	-0.779894681188253	0.046933362700758	0.274302577512285
Merged-chr7-126884102-2	chr7	126883602	126884602	+	767.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	865.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	4.81565033447218	5.23382858181255	5.14044894590774	5.29442202669924	4.8784927816436	5.49841625923335	0.335230895774827	0.413243609246308	0.784870445975047
Merged-chr1-43461747-2	chr1	43461247	43462247	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	MTC|LTR|ERVL-MaLR	15996.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.63065617636514	3.78369278131472	3.89329460996253	4.0160744625026	3.899930322732	4.1470326355022	0.78057064895704	0.132955732267792	0.487871386598783
Merged-chr13-14064849-4	chr13	14064326	14065326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198122, exon 2 of 23)	5' UTR (NM_198122, exon 2 of 23)	1042.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	6.72397420144669	6.22976414429132	6.28118376817576	6.39187591076136	5.91043854994564	6.15209000581634	-0.453324974928589	0.159488085438126	0.53171647187734
Merged-chr19-5843134-4	chr19	5842637	5843637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2341.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	7.80311873035622	7.75280916242071	7.65943106722789	7.6772700763769	7.75625789812497	7.67008932016994	-0.0561230086833492	0.795414593792851	0.951123178804868
Merged-chr4-108301190-4	chr4	108300699	108301699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033634)	promoter-TSS (NM_001033634)	-109.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	7.28666414351096	7.08737218174057	7.26108339585345	7.18463236772957	7.24856269847893	7.08664509125008	-0.048953963133859	0.83706072613226	0.962035641067236
Merged-chr7-132653241-4	chr7	132652717	132653717	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	42574.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	3.0836573475045	2.91259767973374	3.11924508457377	2.65676097669687	2.76821851627784	3.19028477699502	-0.719204295410222	0.341691330368378	0.730935106878357
Merged-chr13-3573956-4	chr13	3573457	3574457	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134063, exon 14 of 20)	exon (NM_134063, exon 14 of 20)	35882.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	3.53604175289318	3.39699944532984	3.51774746311931	3.37788744342969	3.22748766832372	3.31142216860513	-0.69830457352911	0.243273462429717	0.640502592040103
Merged-chr5-135677418-4	chr5	135676888	135677888	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-11757.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	3.82254582200291	3.88998883954753	3.8008299433799	3.51835689201596	3.45936764483529	3.71808167551015	-0.959351657405833	0.0814044495517166	0.37741691861031
Merged-chr4-44033946-2	chr4	44033446	44034446	+	642.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015828)	TTS (NM_015828)	21296.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	3.39676008299073	3.25747844402048	3.52006641250717	3.06559766247091	3.23403326613303	3.14983726890569	-0.968678831830537	0.130696941316006	0.483186228268893
Merged-chr19-55811385-1	chr19	55810885	55811885	+	565.0	f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(TG)n|Simple_repeat|Simple_repeat	69575.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.89771464842245	3.91714443219728	4.03524865276203	3.89249768385492	3.95875282470391	4.05668297661196	0.0637691628501524	0.897861026924612	0.976179002491449
Merged-chr5-93093278-4	chr5	93092764	93093764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347377)	promoter-TSS (NM_001347377)	-152.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	5.92273434185186	5.91935864101482	5.98492434447543	5.91929154787616	5.59788075648397	5.21207707239773	-0.578096842703224	0.0992475457706691	0.42004541385646
Merged-chr8-61917686-3	chr8	61917198	61918198	+	907.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-10389.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	4.34764224655807	4.78147165717788	4.69016871842302	4.62189536012351	4.6295771157035	4.67813050125689	0.0540315375727972	0.899972594152407	0.976728292075907
Merged-chr16-11342228-2	chr16	11341728	11342728	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	19324.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.00038172796535	5.34576643520831	5.3982130463393	4.97621846798313	4.90154828325193	4.82905502506913	-0.73523536421144	0.0546475391201596	0.300238523282287
Merged-chr8-77549449-4	chr8	77548970	77549970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081240)	promoter-TSS (NM_001081240)	73.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	7.53987909420046	7.54852525562811	7.35038421215095	7.48273240245259	7.50856725094137	7.26827083919339	-0.0840540124528037	0.719202073234116	0.927732208505765
Merged-chr13-96542581-4	chr13	96542067	96543067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164222)	promoter-TSS (NM_001164222)	12.0	NM_012048	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	7.02576150521434	6.95659663801398	6.59406302616625	6.74754893398993	6.52121062156341	6.5274151907183	-0.436609563080416	0.111686786607002	0.446360909701991
Merged-chr7-44866978-2	chr7	44866476	44867476	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 4 of 11)	intron (NM_133949, intron 4 of 11)	2812.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	3.82725806084663	3.40048104736452	4.04056316553463	3.87159959725728	3.6438423593663	3.87793252388121	0.0703248674873148	0.904681636602229	0.97815366327605
Merged-chr6-30402280-1	chr6	30401780	30402780	+	984.0	f0_c57.idr	intron (NM_001311087, intron 1 of 8)	CpG	425.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	6.93827623108021	6.71980858994746	6.71758575791635	6.83466692606937	6.89374625552122	6.64406252210987	0.0047430421827339	0.985410114507228	0.996904015210561
Merged-chr5-25084017-3	chr5	25083515	25084515	+	974.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	16627.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	2.81901486758402	2.83044587056872	2.99564734249837	2.75138785093688	2.6921062200678	2.77071464014155	-0.746028232166216	0.300015147885669	0.696725102575237
Merged-chr8-84233804-2	chr8	84233295	84234295	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 2 of 13)	L1MA4|LINE|L1	3247.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	2.87027785260319	2.61081585250032	2.58540660173952	2.88382794167208	2.75825012494823	2.8537568022384	0.683290494469264	0.366965391128099	0.752023890032025
Merged-chr18-49705603-4	chr18	49705142	49706142	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170960, intron 2 of 3)	Lx9|LINE|L1	49959.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	3.60375536566093	3.65884655023776	3.48544417440587	3.51485352102574	3.99350600937655	3.55820106389271	0.442679989276161	0.455016808734914	0.810667376538136
Merged-chr1-167337322-4	chr1	167336811	167337811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12680.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	6.97830172350149	7.28685552238011	7.08861027900969	7.20348288738691	7.64464524919018	7.29320390280701	0.410780938976955	0.118810193623706	0.460712023070245
Merged-chr8-83593667-2	chr8	83593166	83594166	+	624.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_134118, intron 1 of 12)	intron (NM_134118, intron 1 of 12)	825.0	NM_027179	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	5.64378851920076	6.0238900269193	5.49788543327864	6.05396291555222	6.12927752864877	5.5625364167368	0.34970418051832	0.329151706465395	0.721152738507735
Merged-chr14-55681534-2	chr14	55681033	55682033	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_145705, exon 1 of 9)	exon (NM_145705, exon 1 of 9)	284.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	8.16780363919836	8.30620582453779	7.84787913329252	8.01493642280012	8.28017261527438	8.08281589703603	0.00817983315108721	0.972587545847658	0.993868590220018
Merged-chr4-130805937-4	chr4	130805464	130806464	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	Tigger7|DNA|TcMar-Tigger	13427.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.24719882040438	6.36183176537724	6.59365044127917	6.77721050900465	6.70745548374552	6.66888709858907	0.514229322772541	0.0551964861623643	0.302016972916127
Merged-chr13-46961968-1	chr13	46961468	46962468	+	609.0	f0_c57.idr	Intergenic	HAL1|LINE|L1	-32250.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	2.34387463495742	2.24025094400994	2.29477777913343	2.36676632798274	2.26567444927133	2.5602750176864	0.67880701156833	0.420723397585005	1
Merged-chr17-80719383-3	chr17	80718846	80719846	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	Charlie1|DNA|hAT-Charlie	8679.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	3.61044922471222	3.46779626349314	3.62480198295267	3.55633865562628	3.23986214673452	3.69441808556655	-0.236839974996507	0.693189055939123	0.91884092896984
Merged-chr4-132946698-6	chr4	132946252	132947252	+	918.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24201.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	7.89277764123269	8.01241028184011	7.81569319531284	7.87138437890031	8.00110505841226	7.71449690972671	-0.0553863638453478	0.804576062135748	0.953651704501661
Merged-chr1-132343396-2	chr1	132342896	132343896	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24552.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.59728090706401	5.57558251098332	5.43927456722941	5.72002817968754	5.62734069330147	5.16446232859958	-0.00869043605598004	0.980382278360156	0.995512982807197
Merged-chr11-59544181-4	chr11	59543693	59544693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	1507.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	7.98265950416852	7.77508273082049	7.28797057093067	7.21021483654035	7.50969108372588	7.23523933588488	-0.571000586991292	0.0402604765495714	0.249943574777045
Merged-chr1-127261279-3	chr1	127260770	127261770	+	823.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	RLTR28|LTR|ERVL	56284.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.848780899082	3.36732645548936	3.8491844669945	3.59131911224832	3.33063397913413	3.82309986633217	-0.388189132941214	0.5308695144723	0.851363932161699
Merged-chr19-28011625-4	chr19	28011138	28012138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011265)	promoter-TSS (NM_011265)	-472.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	6.8480338403601	7.00897026345419	7.14962984350863	6.89506111335599	6.65351369325712	6.91264714555586	-0.283045142164592	0.274640775230455	0.672027926051336
Merged-chr19-23058580-2	chr19	23058080	23059080	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82646.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.82659278587932	3.12579258839488	3.04975819887718	3.32488152013877	3.05817658161627	3.60768315232779	1.42097424272629	0.0448306541819348	0.267007027166799
Merged-chr7-100942063-2	chr7	100941602	100942602	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-9941.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	3.14728352451658	2.84448282164565	3.37340954250525	3.00790858322545	2.91592588353412	3.17763287362772	-0.440526138015291	0.53277449611391	0.851971173271146
Merged-chr2-128241094-1	chr2	128240594	128241594	+	643.0	f0_balb.idr	Intergenic	Intergenic	113519.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.41368228983639	3.48063301006415	3.35988516229727	2.95522064453955	3.078261907281	3.26308448316162	-1.36539531459175	0.0366094125720314	0.235471973344122
Merged-chr1-93013627-3	chr1	93013125	93014125	+	952.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7291.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	2.32132915318641	2.28623106859829	2.46199037493445	2.34329485119253	2.21647172536024	2.27944419554207	-0.512657420982184	0.542916172218433	1
Merged-chr8-4329177-3	chr8	4328675	4329675	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	3965.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	2.83598984630817	2.68632273490806	3.07584245609058	2.96830029266423	2.88830312213635	3.35948487935066	0.982137325921183	0.183657361914885	0.566978138619586
Merged-chr1-135267739-4	chr1	135267237	135268237	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 5 of 9)	intron (NM_001159624, intron 5 of 9)	-9265.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	5.11156535930722	5.26847049674914	5.10640481710544	5.54988438976944	5.19912524235725	5.36758362426669	0.41588377553519	0.246418789112161	0.643485268781217
Merged-chr19-4136148-4	chr19	4135721	4136721	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144532, exon 5 of 6)	exon (NM_144532, exon 5 of 6)	3388.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	3.61735766537414	3.73838557000069	3.61279925695661	3.60745103242283	3.47927720986898	3.88049171037228	-0.011483711538885	0.983817031155445	0.996443902142547
Merged-chr4-55591661-4	chr4	55591154	55592154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	-59179.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.32906447947132	3.30854263692758	3.41524192836945	3.6441170950233	3.57871428505437	4.0266511791885	1.46914625119197	0.0138151772839283	0.125604910656022
Merged-chr9-42264343-4	chr9	42263824	42264824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172769)	promoter-TSS (NM_172769)	-24.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	6.27631433542896	6.57055784337575	6.09021135214188	6.20562615374612	6.0717887935656	5.85456958464098	-0.468681346600017	0.130838304887447	0.483427782996212
Merged-chr17-57347125-4	chr17	57346605	57347605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11581.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	7.10578748479819	6.81252993680022	6.79725620083916	7.04954106501413	7.25563590105901	6.95910160099186	0.280961146171841	0.281692468042766	0.679787322531974
Merged-chr7-132316430-5	chr7	132316050	132317050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028578, exon 1 of 1)	non-coding (NR_028578, exon 1 of 1)	476.0	NM_001360768	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	7.9422203589996	7.82332095794796	7.41869918966539	7.71292235817793	7.87290976994167	7.71599830606113	0.0230468193539295	0.925934818724641	0.983305773102619
Merged-chr11-116581556-4	chr11	116581060	116582060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173755)	promoter-TSS (NM_173755)	-113.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	4.31317524850893	4.13498237327046	4.03210537413375	4.03591998617549	3.82388811452499	3.78654614045839	-0.837498927390145	0.0994516244112265	0.420529056002101
Merged-chr13-58503792-4	chr13	58503292	58504292	+	968.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100449.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.910047948533	3.41861040184626	3.76472950277783	3.20403439175869	3.24238038721446	3.23294553157663	-1.87475770566009	0.00357477062571235	0.0479428516602525
Merged-chr10-40317394-2	chr10	40316894	40317894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-15206.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	5.44833727334489	5.61480758038545	5.68271997855317	5.51717727707855	5.5044859302602	5.34412555403173	-0.222696987051015	0.500456301654673	0.834993642559444
Merged-chr12-91008960-3	chr12	91008462	91009462	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-36886.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	4.38810510658505	4.6286602352639	4.62872547431558	4.07402545502792	4.1201817130837	4.28289171757974	-1.04808395035919	0.0219569746814088	0.171823187180538
Merged-chr5-112286484-2	chr5	112285984	112286984	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	9793.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.54654653073989	4.9730614584533	5.57695084129975	5.68347636062933	5.1942576513664	5.47330460888132	0.141472407378554	0.720201301756227	0.928071578828455
Merged-chr9-96559241-5	chr9	96558758	96559758	+	912.0866699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 16 of 23)	MLTR11B|LTR|ERVK	72245.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	4.65987380701067	4.73362171953702	4.49057062602899	4.41282857318443	4.49661985428808	4.59974733798288	-0.33688360783046	0.425359215771731	0.793033043608125
Merged-chr2-75757510-4	chr2	75757032	75758032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52869.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.48725321136274	4.28913113527945	4.72429120381714	4.92165639904848	4.52374081421496	5.12413421408217	0.860726337868939	0.0584532637256134	0.312562121205632
Merged-chr11-101172103-4	chr11	101171609	101172609	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-737.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	6.41099662413861	6.80294409026256	6.672915627862	6.56964831426623	7.04313257817156	6.80927869555109	0.295476166734976	0.305245301913525	0.701486464326093
Merged-chr19-3719204-4	chr19	3718711	3719711	+	875.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10800.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	4.42231468486766	4.47082295743505	4.25703112160761	4.50587600098252	4.29484291578442	4.1287305252585	-0.178399764188219	0.69917088902489	0.920516002119984
Merged-chr2-169008483-3	chr2	169007969	169008969	+	663.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30200.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	4.07526885256971	4.32624277882123	4.03335279800767	4.25129657578283	4.23191717435259	4.0527789523866	0.0782596174704477	0.871419873448475	0.970222087171093
Merged-chr14-30908140-4	chr14	30907646	30908646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008407)	TTS (NM_008407)	15441.0	NM_008407	16426.0	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	4.70727681373055	4.70871818165508	4.86046124533398	5.43047296635901	5.14013613887934	4.96477419281878	0.958732041410091	0.0139120611259474	0.126237602202393
Merged-chr4-70410478-4	chr4	70409970	70410970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145990)	promoter-TSS (NM_145990)	-35.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	6.23480029220761	5.99371934506716	6.09967921620861	6.45434745043508	6.43569828478789	5.97252378304001	0.344455212085346	0.260019296306694	0.657579648868986
Merged-chr19-34444929-3	chr19	34444483	34445483	+	823.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	30152.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	4.29196705291808	4.63154835126139	4.69288167309606	4.66759915394224	4.57133154389331	4.56035769138169	0.136025960697581	0.753841904708613	0.938570691167124
Merged-chr7-29211468-4	chr7	29210975	29211975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164658, intron 1 of 27)	intron (NM_001164658, intron 1 of 27)	2558.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	5.59889472892659	5.50530831909433	5.99090809589467	5.73339866791989	5.63927812044954	5.64468173480073	-0.0525337515643908	0.875185119567035	0.970943409587731
Merged-chr1-75124924-5	chr1	75124485	75125485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_194333)	TTS (NM_194333)	8905.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	7.05970961347886	7.19666675278528	7.32509645320257	7.45086632566457	7.11216601537279	7.17444966874973	0.0906481893492744	0.717867404655861	0.927216085145081
Merged-chr11-117991917-4	chr11	117991413	117992413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	5056.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	7.04035975715961	7.1833161401184	6.99259825922457	6.5822960295331	6.62014769035706	6.64661627130109	-0.717990616592633	0.00377585405272982	0.0498383984802575
Merged-chr9-50904688-2	chr9	50904188	50905188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	Lx5|LINE|L1	47764.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.71857846519921	3.46949623673788	3.37069132933251	3.91026952039202	3.51906219215395	3.9272600049848	0.879022324975254	0.142788018597314	0.504417233130498
Merged-chr4-141142591-7	chr4	141142082	141143082	+	996.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2786.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	5.44382467906216	4.81779698850951	4.80526758752674	5.27905947415525	5.09816173744717	5.02908423195179	0.14822713218532	0.724402030101762	0.92936515763351
Merged-chr13-98929169-4	chr13	98928644	98929644	+	830.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.20364328676545	3.31044821582236	2.94246318430561	3.40065976605692	3.40232700499527	3.3878613365984	0.918435004564802	0.168171948008164	0.544590443660762
Merged-chr12-91844786-2	chr12	91844286	91845286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	4371.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	4.05734861082575	3.91619480763834	3.98683186921122	3.88200656283957	3.8801567138532	3.63302098201274	-0.547447649702811	0.296068570601685	0.692812588948336
Merged-chr19-40726316-1	chr19	40725816	40726816	+	666.5	f1_c57bl6.idr	intron (NM_001304721, intron 6 of 9)	intron (NM_001304721, intron 6 of 9)	66546.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.63588796206623	2.82849991518387	2.94188295810943	2.74584402511882	2.55987416214418	3.12434566864754	0.106344818553025	0.891927300705161	0.974942585822634
Merged-chr8-119830847-6	chr8	119830363	119831363	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	9716.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	5.23101171129571	4.95468595751124	5.28152840905243	5.06516461780566	5.0344416084251	4.82398656214613	-0.361047828920097	0.343373771506785	0.732263180571444
Merged-chr12-32163849-4	chr12	32163330	32164330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44508.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.24518643100784	5.30657309591529	4.81474415586108	5.73045739604253	5.70766183751259	5.12956905129952	0.796793350402931	0.0480540990656479	0.277904189258718
Merged-chr17-71184415-2	chr17	71183930	71184930	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	452.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.00160167933111	7.24227718196301	6.96009991761811	7.1783372050359	7.38728146234971	7.40548784551654	0.369792954205474	0.135136366970032	0.491294119824757
Merged-chr13-9764543-4	chr13	9764049	9765049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-79.0	NM_001347472	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	8.38641471746545	8.15892694097272	8.1053093767348	8.42465507083812	7.67742037441921	7.97875406916894	-0.223484534460459	0.412894033396119	0.78471875852647
Merged-chr4-135439447-4	chr4	135438943	135439943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5638.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	6.1909720850532	6.09499970564429	6.08565559233651	6.12844414494822	6.66214675163822	6.14672454322163	0.377067964020342	0.228188010900865	0.623147576440797
Merged-chr19-47446295-2	chr19	47445795	47446795	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	18116.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.61708338366378	5.82395607553557	5.73273803520967	5.70174999039997	5.4304883632664	5.39498491307684	-0.389983578364388	0.236403240498394	0.632720263621021
Merged-chr3-79233916-3	chr3	79233409	79234409	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	20990.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.85976527525905	4.77582428731261	4.42833550412583	5.10861929109244	5.07043503009633	4.76871160102277	0.633134108454833	0.131712130456593	0.48529880667016
Merged-chr8-126494623-4	chr8	126494123	126495123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19558.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	5.33912025689764	5.13057469855463	5.06011310940233	4.99247259308685	4.32036483715711	4.47660840324756	-1.22710313788196	0.00599907693963034	0.0697751179749457
Merged-chr11-105502530-4	chr11	105502013	105503013	+	930.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45778.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	4.11693269497724	4.30755117942835	4.21759123553211	4.05642382785171	3.90340319229439	4.32802792302971	-0.342792754258032	0.485282786788041	0.827394620754206
Merged-chr2-29826346-2	chr2	29825846	29826846	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1043.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	5.94067502818262	6.09823751575307	6.3770346504126	6.04587469940582	6.2780888605486	5.98546068264544	-0.0378745075123277	0.902230244490264	0.977426235982703
Merged-chr5-124473464-2	chr5	124472964	124473964	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	4771.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	2.83795693580891	2.70295058746819	2.71726908974759	2.86035327075101	2.97149415416092	2.91493467510077	0.826552616681885	0.247784466301552	0.644825479202461
Merged-chr14-21758571-2	chr14	21758002	21759002	+	601.0	f0_balb.idr|f1_balb.idr	intron (NM_001359953, intron 1 of 5)	Lx9|LINE|L1	6950.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	5.97693883536429	6.20523080193537	5.9778822164461	6.3521319481309	6.67999768873338	6.59465037815475	0.806306992259366	0.00530470055996254	0.0637391370676337
Merged-chr4-150504876-3	chr4	150504372	150505372	+	827.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 8 of 22)	intron (NM_001085492, intron 8 of 22)	147302.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.71365545258745	3.59472011882358	3.9835610892214	3.85916587219082	3.54270559064445	3.86481178966649	-0.0265071733240136	0.962301207282832	0.990814379307595
Merged-chr11-29149066-4	chr11	29148571	29149571	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	18320.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	5.81579791644788	6.1169575723964	5.83197188933166	6.33874444278177	6.54465969006294	6.24367328254437	0.764268449047115	0.0109357735327848	0.106989282083005
Merged-chr10-14705556-4	chr10	14705075	14706075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045824)	promoter-TSS (NR_045824)	-34.0	NR_045824	69412.0	Mm.259735	NR_045824	ENSMUSG00000019865	1700016L04Rik	-	RIKEN cDNA 1700016L04 gene	ncRNA	6.725364896709	7.07594254333972	6.97096997162024	6.94354105541087	6.91011638091844	6.93274528897011	-0.00630602890873522	0.980245058557923	0.995500659055379
Merged-chr10-8816929-4	chr10	8816426	8817426	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	69144.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.37360243082623	4.87323954906559	4.85814154101114	5.0107663936114	4.82008046575152	4.84619946631373	-0.37145481421621	0.364625447845108	0.750000105413584
Merged-chr5-134232800-4	chr5	134232298	134233298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3173.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	7.91254973184639	7.94285566108503	7.73085186911203	7.95608372915712	8.03936499127799	7.56681172999034	0.0139489134655623	0.954115249934594	0.989495550016789
Merged-chr6-112778384-4	chr6	112777906	112778906	+	971.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 5 of 21)	MIR3|SINE|MIR	-81736.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	3.98797520026947	4.12111322539983	4.32495526242909	4.07660937244343	4.21618527923431	4.39118749050056	0.237367678125252	0.622434195698084	0.891161426909556
Merged-chr14-24493101-2	chr14	24492601	24493601	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207634, intron 3 of 4)	intron (NM_207634, intron 3 of 4)	2348.0	NM_001360586	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	2.49376918441868	2.53123069166683	2.73610878365288	2.44253189254284	2.48370281046016	3.08675847008532	0.593644836763252	0.480453746538408	0.824543506620807
Merged-chr3-121293381-4	chr3	121292857	121293857	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1617.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	4.0460403162728	4.0440559034155	3.97903513853111	4.65624924247465	4.36944711368135	4.34326564428457	1.19566044363354	0.0112831262783135	0.109524775007689
Merged-chr6-92100753-2	chr6	92100253	92101253	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8320.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	4.25728092411522	4.28835296973125	4.18389681091777	4.1113471907778	4.1295522680378	4.4664341189477	-0.0311819777954993	0.947247729075612	0.988008807662239
Merged-chr3-116837182-3	chr3	116836640	116837640	+	827.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	2.99537047564256	3.1021528954781	3.14868032905818	3.18127684393611	2.83418345434443	3.5358565162004	0.539669990356177	0.450762031930507	0.808584640901858
Merged-chr10-57729067-2	chr10	57728567	57729567	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	RMER6A|LTR|ERVK	-55856.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.32194938896134	6.55676991808494	6.15951048953747	6.30054727332487	6.59244361135166	6.36487491375546	0.108781680203688	0.709153048924462	0.923909555179111
Merged-chr1-58652745-4	chr1	58652295	58653295	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045007, intron 1 of 1)	intron (NR_045007, intron 1 of 1)	154.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	7.23554108695521	7.27058681071577	7.25469306551289	7.50596984209249	7.5479307313754	7.20330318846405	0.270588101485846	0.257165623329409	0.654457620898992
Merged-chr17-17882828-4	chr17	17882320	17883320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	1119.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	7.22870579942018	7.2427898448511	6.92463684125037	7.21291203460547	7.56849101003009	7.62283469383399	0.49164284063152	0.0581469646460929	0.311557142754947
Merged-chr3-136684726-3	chr3	136684231	136685231	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	14665.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	2.85152225123317	2.79734934359521	2.78896618026504	2.39597627118219	2.54605384617876	2.80178679882962	-1.26505637173163	0.121294222474016	0.465742947098198
Merged-chr12-80197640-4	chr12	80197128	80198128	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	62743.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	2.68740633586871	2.32534948921513	2.7440168230762	2.61420600039748	2.66660943882946	2.81698878793694	0.561606840320475	0.497362447432402	0.833609316667445
Merged-chr13-56296436-4	chr13	56295900	56296900	+	944.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019568, exon 1 of 4)	5' UTR (NM_019568, exon 1 of 4)	151.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	3.22249076302628	3.07997292337011	3.32156028086345	3.30346769347158	2.7472452080501	3.16887357808706	-0.490737882351061	0.499157489478299	0.834298784414566
Merged-chr6-38535264-4	chr6	38534784	38535784	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025363, intron 1 of 1)	intron (NM_025363, intron 1 of 1)	423.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	6.84171431864631	7.11205295498669	6.63120520134062	6.55435040445624	6.87165874830904	6.41153137586733	-0.383140713269426	0.192356488499785	0.579430137750791
Merged-chr2-160237935-4	chr2	160237431	160238431	+	948.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	89563.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.09394459214066	6.00834616672031	5.92524192878966	5.98803237318706	6.17889825106197	5.91293060137699	0.0449087866607116	0.879629051561981	0.97219374767077
Merged-chr19-55286238-4	chr19	55285737	55286737	+	662.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 12 of 21)	intron (NM_027976, intron 12 of 21)	29799.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	2.99455221300093	2.91771624479997	3.20140501597221	3.21589707994955	3.10677695995183	3.32716209327489	0.783708290656635	0.235414936309028	0.631597709612866
Merged-chr11-120236573-3	chr11	120236079	120237079	+	854.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	3632.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	3.90007374043001	3.83458579511671	4.16617999276764	4.73548783431077	4.66898243392989	4.42024389808785	1.80074937946426	0.000158041491408726	0.00414183194240544
Merged-chr13-112667346-4	chr13	112666852	112667852	+	847.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6586.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	5.85539803972024	5.80735736099879	5.62183136925433	6.33220278343309	6.62286958672194	6.21152069230059	1.08588435017455	0.000389163895512179	0.00860982435995144
Merged-chr3-149086717-4	chr3	149086190	149087190	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132055.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.00592965149751	4.5311924818608	4.72890962357329	4.37994707623167	4.33217984800926	4.4238063058862	-0.971808976741964	0.0277151999937069	0.198735467173075
Merged-chr12-85338499-2	chr12	85337999	85338999	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	863.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.39800339446001	6.36022740572959	6.15883597310614	6.55945935840353	6.64080672553312	6.49969165089026	0.411704422027799	0.127841024279735	0.478085211158121
Merged-chr6-88627539-3	chr6	88626987	88627987	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278671)	promoter-TSS (NM_001278671)	-39.0	NM_001278671	74589.0	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	4.56898635735908	4.51024828020265	4.13915882148981	3.74888899876765	3.82719640499999	3.84398834302806	-1.8226055038748	0.000392160363672292	0.00865081642111454
Merged-chr1-92640243-2	chr1	92639743	92640743	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1705.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	5.82634082613062	5.65280335452284	5.57121682753145	5.82733738546877	5.75389286631742	5.69006675556406	0.120676744682543	0.700873208638863	0.921028048562707
Merged-chr16-91396478-2	chr16	91395978	91396978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	RSINE1|SINE|B4	-9757.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.72578626311147	5.31457416897875	5.99845551311334	5.48610658214037	5.627108834676	5.78980608317864	-0.115777602949838	0.748760069260262	0.937087780077821
Merged-chr18-80410506-3	chr18	80410001	80411001	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-46247.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	3.29605503116701	3.13842021439311	2.98214792870754	3.05264216340649	2.87072582808505	3.11528721994316	-0.635097794246052	0.354111766161175	0.74127479530904
Merged-chr5-139703058-2	chr5	139702558	139703558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33275.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.56178897107112	5.43326117290051	5.55335780550037	5.85985274672345	5.64110631023352	5.72456375853112	0.422944154543493	0.185326628834723	0.569470877644115
Merged-chr8-72712750-4	chr8	72712268	72713268	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-10502.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	3.93037861637036	4.02208794778351	4.34161363981234	4.29302275846737	4.07650806625981	3.89457777220172	0.00442292474619079	0.993115471160446	0.998651348330892
Merged-chr8-46933861-4	chr8	46933359	46934359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53028.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	8.25448426676525	7.97326996511866	7.92106889301605	8.01640988579124	8.1055692550195	7.82941483025815	-0.0962862611470477	0.677384102637442	0.912877191135129
Merged-chr18-3009973-1	chr18	3009473	3010473	+	675.5	f0_balb.idr	Intergenic	Intergenic	113439.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.51445444767286	3.80464108051614	3.76526247915843	3.2115966278225	3.15945730638794	4.40839694001142	0.237455500513794	0.851645199605908	0.96531854415899
Merged-chr12-119313604-2	chr12	119313104	119314104	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75328.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	4.7067685299215	5.19865043526494	4.80250197536315	5.05452555524243	5.16636133793248	5.09111181396145	0.374790838382471	0.348230056989551	0.736107144694558
Merged-chr2-28839499-2	chr2	28838999	28839999	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033294)	promoter-TSS (NM_001033294)	861.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	3.46362927309083	3.68376897429533	3.75530960185775	3.33978302685508	3.38147970029623	3.46435385361046	-0.894238899352794	0.127335797663105	0.47699287574227
Merged-chr11-62010678-2	chr11	62010178	62011178	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	53915.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	5.02583833659586	5.24279641619442	5.27370283124223	4.93552850393318	4.69082621853333	4.82602250435457	-0.790873661508917	0.03871027749719	0.243978546431312
Merged-chr6-48699126-4	chr6	48698650	48699650	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9094.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	2.54006591551686	2.53475703180688	2.50318862230574	2.56763275913018	2.54338428382562	2.82311727797729	0.673867689312012	0.386397352562599	1
Merged-chr6-52488442-2	chr6	52487942	52488942	+	769.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4009.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	5.1916638290608	5.06838231186571	4.76395557763576	4.92688826304189	5.1627728937223	4.51507480263373	-0.251000590584428	0.566347784572561	0.867321286905744
Merged-chr2-154303008-2	chr2	154302508	154303508	+	799.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4236.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	4.69426968068331	4.7361467587956	4.63322024726063	4.46212030748729	4.65397732248537	4.39675317541289	-0.413551082464576	0.327614831778038	0.719793584677403
Merged-chr18-23914705-4	chr18	23914198	23915198	+	869.3249509999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-39990.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	3.6877835922186	4.15072750407156	4.13340676903041	3.74003368890166	3.49684315773732	3.87897591589171	-0.950146435142109	0.093886988227104	0.408158229697015
Merged-chr11-11761731-1	chr11	11761231	11762231	+	608.0	f1_balb.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	47231.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.54678750759249	4.74294319151639	4.94189526754449	4.51546076316802	4.67909069266001	5.03795378375612	0.0160182052434064	0.970537639144251	0.993498134685548
Merged-chr8-105290292-5	chr8	105289770	105290770	+	918.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-742.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	3.83097255060822	3.95606800765435	4.12538581089955	3.93358066930011	4.04998482624302	4.23600870607334	0.308600078978311	0.538768734232018	0.855475830625121
Merged-chr1-138542303-2	chr1	138541803	138542803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	77454.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.30980469324655	6.59617986269241	6.44090599876741	6.41332515751604	6.45239600633117	6.15641102636313	-0.162059025743898	0.567313348307316	0.867922102830153
Merged-chr13-51849022-4	chr13	51848536	51849536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011817)	TTS (NM_011817)	2361.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	6.81441671105366	6.67495544826792	6.78053945487575	6.65236999517097	6.87048473353404	6.97932577434075	0.127093146794727	0.622546799658833	0.891197759894683
Merged-chr11-64978935-4	chr11	64978422	64979422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023479)	promoter-TSS (NM_023479)	-113.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	5.50612658425513	5.68840975204337	5.89507112092342	5.77609409509885	5.64925388012901	5.73817186417551	0.0424228559614357	0.89529986070868	0.975665889379756
Merged-chr2-34913856-1	chr2	34913356	34914356	+	654.75	f0_balb.idr	intron (NM_028716, intron 1 of 14)	CpG	120.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	4.90509315082079	4.97007371328394	4.50484504462811	4.84999561334034	4.86423326482464	4.70619389078701	-0.0202153407534652	0.961208747465577	0.990479850637354
Merged-chr5-146832097-1	chr5	146831597	146832597	+	583.5	f1_balb.idr	promoter-TSS (NM_019647)	promoter-TSS (NM_019647)	-793.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	6.49492931772649	6.45806883558901	6.59167081223711	6.69288799443384	6.75398099714634	6.33585921157933	0.170909751913874	0.535772625759042	0.853668337370661
Merged-chr7-43273733-4	chr7	43273348	43274348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	39452.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.74402075394718	5.21048462354041	5.27554929953617	4.9606481264836	4.69038191221305	5.12393549714622	-0.355886957642267	0.393311110157205	0.771515439837752
Merged-chr14-121352409-3	chr14	121351912	121352912	+	881.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	26818.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	2.54423516439748	2.44082293841268	2.71867459034505	2.53644249245958	2.56556285661087	2.47964539122733	-0.222532421505624	0.77792500556851	1
Merged-chr9-120571054-4	chr9	120570578	120571578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-439.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	7.50429440423996	7.65192571903792	7.6961435246147	7.79982981594608	7.92237650951639	7.6048038499053	0.247805054819308	0.281241171470047	0.679387396944016
Merged-chr6-124818073-4	chr6	124817588	124818588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326594, intron 15 of 19)	intron (NM_001326594, intron 15 of 19)	-3792.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	4.39872186293297	4.20300760548256	4.97115257421559	4.29238184025761	4.35147281216975	4.66702050180202	-0.282978537526023	0.571255832159102	0.869428183241799
Merged-chr11-118172316-2	chr11	118171816	118172816	+	849.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	40426.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.42194670075403	3.38687486475157	3.48330337660253	3.22231991261902	3.1910188996663	3.78826547184188	-0.0257589317118994	0.968318834033204	0.992765725825045
Merged-chr11-79878311-4	chr11	79877831	79878831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84056.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	7.00170907501806	7.19857266582529	7.15633349918947	6.4457670404763	6.89017080585764	6.50444996164242	-0.737632594991532	0.00762230559738069	0.0831131967169247
Merged-chr1-87213069-2	chr1	87212569	87213569	+	600.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-842.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	4.7994232917396	4.61855928864669	4.77036693293887	4.45676280983302	4.79593048633596	4.72137170480533	-0.138732835138682	0.739141394589043	0.934160003144178
Merged-chr1-64376579-4	chr1	64376069	64377069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156235.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	7.16454842687703	7.66998580331321	7.57669965632585	7.15018185738787	7.4689278777239	7.44877217460532	-0.181737462112821	0.494702856111153	0.832098209532918
Merged-chr13-108335428-4	chr13	108334953	108335953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	19116.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	4.89647970988136	4.32198286976345	4.05932099453283	4.01403088120942	3.90612239576045	4.02586908957291	-1.37652725989264	0.00982743906112853	0.0992741956292804
Merged-chr7-89217329-2	chr7	89216829	89217829	+	811.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	(CA)n|Simple_repeat|Simple_repeat	121458.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.42463025102992	5.54905879354037	5.71536704395773	5.42207857170164	5.22097147317489	5.30033055705956	-0.478036291536522	0.160320000422762	0.532965919658045
Merged-chr2-93590074-4	chr2	93589593	93590593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52341.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.75007353877389	4.70250954441186	4.6353385621015	4.75928547758575	4.81329102948578	4.70206617532645	0.146069355402394	0.712919725063211	0.92531822516521
Merged-chr2-167923761-4	chr2	167923264	167924264	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8563.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.28894816446656	5.32042475352686	5.35890180306607	5.60257252083754	5.81575758064764	5.89980516207778	0.858917286915172	0.0086623467808631	0.0911798293411837
Merged-chr15-99029065-4	chr15	99028542	99029542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009448)	promoter-TSS (NM_009448)	-849.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	7.10825533113994	7.07026332518025	7.0177170080654	7.11704155721795	7.37991992774694	7.06226064068334	0.20330476351848	0.408967054756979	0.782473112145764
Merged-chr15-35155839-4	chr15	35155326	35156326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019635)	promoter-TSS (NM_019635)	-20.0	NM_019635	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	5.27008550727015	5.5150974537548	5.54220897813027	5.43203411670264	5.23439346349339	5.06596655740063	-0.3659773486472	0.305806488087506	0.701883343337569
Merged-chr6-39780518-2	chr6	39780018	39781018	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	30418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	6.84553474304405	7.45264641266504	7.30178851181352	7.0101992866558	7.5824662387345	7.28036504743307	0.137097029940442	0.645040596329965	0.900402236225432
Merged-chr4-132596493-2	chr4	132595993	132596993	+	901.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32426.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	2.88951467491106	2.81081408173888	2.76820222431801	3.15405248562816	2.63678454188691	3.14503967829016	0.821884913067163	0.280998614761366	0.679156845994823
Merged-chr3-145924908-4	chr3	145924392	145925392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	CpG	630.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	8.33708269906084	8.64917656263334	8.35038777330589	8.3243819053593	8.56994970135278	8.49661765847919	0.0162156402305494	0.941818622466452	0.987058762320129
Merged-chr17-25015367-3	chr17	25014862	25015862	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-132.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	7.9625829957151	8.18882130445687	7.6199098552003	7.71746211365725	7.73965808388245	7.55700478766814	-0.395372363596838	0.114212698004079	0.451361205201778
Merged-chr5-135478978-2	chr5	135478471	135479471	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	66151.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	8.11256852758421	8.0001465067741	7.92720279190942	7.79222459021125	8.1935417743645	7.89634653821383	-0.0556974853507894	0.811379040808246	0.955260549690371
Merged-chr11-68446130-3	chr11	68445652	68446652	+	936.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	URR1B|DNA|hAT-Charlie	14027.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.41377008266038	4.381910829589	4.50569850272039	4.45783409546589	4.22180480834157	4.40471825471337	-0.185758434281957	0.674325381028978	0.911841916826811
Merged-chr5-140735499-4	chr5	140734988	140735988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11361.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	8.09642250453563	8.04775751001403	7.67540396554407	7.58992244113178	7.74249555107149	7.13313226193138	-0.623410178757043	0.0226240922414867	0.175196782159903
Merged-chr6-90604161-2	chr6	90603661	90604661	+	741.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-719.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	3.33870234541305	3.40941582852775	3.34379070921681	3.36589930476244	3.39734542356347	3.4150781621443	0.103525735894704	0.860635597903978	0.967588655430938
Merged-chr6-126996556-4	chr6	126996050	126997050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18992.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	3.70213404143181	3.49438743245691	3.31904047336956	3.4934518901692	3.41730056457053	3.56305820132249	-0.119521494666679	0.840776930671169	0.962819298477451
Merged-chr11-117826448-2	chr11	117825948	117826948	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	-434.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	6.50962847335016	6.66692555307233	6.60437402751701	7.29188042014992	7.70378576670677	7.42174258979697	1.35727559217384	1.41144151034478e-07	9.68204659462231e-06
Merged-chr15-62060153-4	chr15	62059650	62060650	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	20893.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	5.14599041860796	4.78738859336789	5.157757156228	4.90963853524424	4.86697540929211	4.83869221877892	-0.35438533585525	0.365068621939839	0.75025511992679
Merged-chr17-35815595-2	chr17	35815095	35816095	+	896.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6118.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	3.28189426473912	3.33844084232452	3.50944682579644	3.32887253714676	3.31409954142531	3.52731317546915	0.0521670374169958	0.93088024689683	0.984702308464168
Merged-chr1-55051200-1	chr1	55050700	55051700	+	618.0	f1_balb.idr	Intergenic	Intergenic	-1570.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	2.91394582986997	2.92464024461097	2.86195282613376	3.02287060891427	2.75620693903153	3.11295104529784	0.308144980923123	0.662816466135754	0.90684977442783
Merged-chr5-64235843-2	chr5	64235343	64236343	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	5486.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.92655039441756	4.91248630268868	5.18989634149755	5.29008992314761	5.15462001496647	5.56560084697466	0.682025127051081	0.0691067599230372	0.34395473619309
Merged-chr2-75936820-3	chr2	75936327	75937327	+	859.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028235, exon 1 of 1)	exon (NM_028235, exon 1 of 1)	1635.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	3.29499281825418	3.85128270011593	3.7749209899891	3.56921180037055	3.37032251531814	4.1119654349893	0.185301692348933	0.777917206681107	0.945257566403653
Merged-chr6-125481239-4	chr6	125480728	125481728	+	764.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	13532.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.87840205171533	3.85602914612902	3.73270204996161	4.12514592510851	4.11329482231563	4.10981995434317	0.864348930155222	0.0836075307997206	0.382678548038086
Merged-chr6-125294183-4	chr6	125293672	125294672	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-8091.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	5.91388653650655	5.6443262188522	5.38167168766745	6.08249435721216	6.16740952307711	5.93357989812507	0.691163509051257	0.036391404767369	0.234696636791446
Merged-chr7-19746958-5	chr7	19746417	19747417	+	858.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2656.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	3.02499126127436	2.81211145943598	3.12984187311102	3.06486791035314	2.82684095054773	3.36170186361482	0.465570043070122	0.517284013688473	0.844527100635531
Merged-chr3-144689455-3	chr3	144688960	144689960	+	946.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	30875.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	3.56365894928964	3.29666054260422	3.61508425715444	3.44317966805079	2.91198505653651	3.12506190571543	-1.27139884218932	0.0679823538854988	0.341195229030978
Merged-chr2-153424764-3	chr2	153424267	153425267	+	666.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001986, intron 2 of 7)	intron (NM_001001986, intron 2 of 7)	19712.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.16102030193213	3.13120035130493	3.23180437653728	2.98165875231314	3.01513131484723	3.07432852465084	-0.673877627912518	0.300975425146884	0.697656370973274
Merged-chr2-14207854-1	chr2	14207354	14208354	+	579.0	f1_balb.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-21560.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.01110278233137	5.2773314573592	5.28359799123777	4.8394178651802	4.60301819197649	5.37468131707875	-0.480558531966676	0.262292480485068	0.660218190283497
Merged-chr13-32801045-4	chr13	32800547	32801547	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-983.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	4.1666938859969	4.16668278023473	4.13124075485095	4.12913148012969	4.27726609704164	4.10375422457817	0.063772775452425	0.891795473677057	0.974942585822634
Merged-chr4-133117715-2	chr4	133117215	133118215	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12918.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.3008816583025	5.70639541517715	6.10049592907349	6.76102144226382	6.28885294476863	6.67626817055296	0.868360470485893	0.00828854880260165	0.0882386858708903
Merged-chr5-121387204-2	chr5	121386704	121387704	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1589.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	7.33116920241989	7.20931801247977	7.36385066920843	6.95329477361328	7.26165126587355	6.96954501968144	-0.33260844928644	0.180817455656893	0.562895103503281
Merged-chr18-69594222-1	chr18	69593722	69594722	+	640.5	f0_balb.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	248062.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.71918837237557	7.03479120057733	6.82417092278077	7.03921125298866	7.34828006419544	6.97048108590776	0.410806608341308	0.123454854710526	0.470220248592576
Merged-chr6-83161872-2	chr6	83161372	83162372	+	882.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027948, exon 4 of 4)	exon (NM_027948, exon 4 of 4)	-4052.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	2.2857660893258	2.28589296421044	2.46658162188727	2.34485561353894	2.11638005603473	2.41516783813325	-0.342276779863181	0.693278173855489	1
Merged-chr11-99171517-2	chr11	99171017	99172017	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16440.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	3.45103448003957	3.13610861354156	3.14216788246325	3.63822598022464	3.9461260759297	3.93802408731794	2.1795446954943	0.00085863991980512	0.0160048634514212
Merged-chr4-141857656-4	chr4	141857190	141858190	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025994)	TTS (NM_025994)	-11331.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	6.0163981984718	5.74427608407672	5.78782130221067	6.13135721677985	6.0063494954363	5.94992068463849	0.305175692483459	0.314268690545746	0.708700303644741
Merged-chr2-181520407-4	chr2	181519908	181520908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-77.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	8.22321224624413	8.66551549211794	8.31305144270372	8.2409804317776	8.5101005238997	8.13961955736561	-0.148880973103443	0.541305930597732	0.856797425729538
Merged-chr12-87267334-2	chr12	87266834	87267834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146036, intron 1 of 8)	intron (NM_146036, intron 1 of 8)	606.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	6.16139096951342	6.634118410285	6.23126610809862	6.21789137531332	6.33601503437801	6.25011458873864	-0.159283014381116	0.594325895391716	0.87898947489373
Merged-chr17-35751813-1	chr17	35751313	35752313	+	583.0	f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-20637.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.33968053191796	4.09108888330563	4.3267886522298	5.50408465338068	5.08829698455027	5.36564314237152	2.50817091008316	8.8280855678629e-09	8.10780732815383e-07
Merged-chr2-180726923-4	chr2	180726444	180727444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	1605.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	6.16501298019254	6.16924453042063	6.4294040320473	6.30635400290262	6.14465901939694	6.24398295409558	-0.0349654928927673	0.902013385378841	0.977392189525306
Merged-chr3-86947634-4	chr3	86947121	86948121	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-26737.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	5.97713699142766	6.42986269671622	6.21484992633333	4.77074577589401	4.52341217503197	4.79309184966074	-3.09455453481141	3.81795687847157e-16	1.3181931781903e-13
Merged-chr14-75787045-4	chr14	75786573	75787573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-36.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	6.62268432825799	6.96651984031015	7.0210171024667	6.78277512012681	7.1293615227664	6.59593410732449	-0.0162242572003716	0.955493879948932	0.989763164889919
Merged-chr10-121376616-4	chr10	121376115	121377115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 4 of 13)	intron (NM_029364, intron 4 of 13)	11525.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.94478764740898	7.87728766766753	7.51550218813461	7.56087824367747	7.77660810334289	7.27833234910195	-0.338764125961507	0.196866059992353	0.584754678471847
Merged-chr8-33929949-6	chr8	33929495	33930495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-132.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	7.37612830370681	6.97319940369768	7.26863600098394	8.27500967774373	7.73312280786709	7.66979432983734	1.03201474767543	0.000225319491895668	0.00551585298077516
Merged-chr5-130256978-4	chr5	130256493	130257493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015876)	promoter-TSS (NM_001015876)	-44.0	NR_153350	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	5.52312693822074	5.90515227899271	5.85105190658026	6.05494429253567	6.04267741410148	6.09519187279262	0.517815818621862	0.0954138150733973	0.411744762068805
Merged-chr13-41074035-4	chr13	41073528	41074528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-3563.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	6.41730724944079	6.68373182007894	6.19853079849484	6.47027339922642	6.63703496172186	6.14616499859763	-0.0207063169812772	0.946407025315434	0.988002063841177
Merged-chr13-111806529-2	chr13	111806029	111807029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	2464.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.30686045419442	7.4760575078825	6.97572333528976	7.51427397721307	7.80755614851455	7.31034063916361	0.426255031317574	0.119497137035305	0.462083733545572
Merged-chr14-74913758-4	chr14	74913288	74914288	+	956.828552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	34089.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	6.99107867643084	7.03627686186757	6.59568067109605	6.63988144832753	6.91988114163344	6.73949200940498	-0.190041164743626	0.48939793977774	0.829669202009416
Merged-chr2-118814154-4	chr2	118813651	118814651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026412, exon 1 of 9)	exon (NM_026412, exon 1 of 9)	148.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	3.6583422485557	3.3766251691777	3.699840515027	3.68809622913412	3.13378994863054	3.81774489982058	-0.0224127494481478	0.972641676919756	0.993868590220018
Merged-chr8-116631209-2	chr8	116630709	116631709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	101782.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	3.14693520861494	3.3126372675169	3.48246515746508	3.88384575438746	3.54427175000276	3.99815066396383	1.82670676712714	0.00323684404862252	0.0446630614615829
Merged-chr7-35039341-2	chr7	35038841	35039841	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	17225.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.23336777772084	3.38786560648948	3.71027546944444	3.60715954721125	3.42931862311983	3.35725815876772	0.0705534392954024	0.909167810397545	0.979384717565381
Merged-chr8-4778251-2	chr8	4777800	4778800	+	651.016663	f1_balb.idr|f1_c57bl6.idr	intron (NM_011369, intron 1 of 12)	intron (NM_011369, intron 1 of 12)	1267.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	2.42061927619215	2.49525918203412	2.42524399770228	2.56049991388999	2.68727983445034	2.87238606028715	1.52461375808541	0.0588049545569336	1
Merged-chr18-54997748-4	chr18	54997234	54998234	+	987.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5143.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.47523411136133	5.78958369693613	5.43868239969162	5.64461449380601	5.83219520334653	5.64885839585568	0.240739887772691	0.469468689971579	0.818977178978635
Merged-chr13-58453227-4	chr13	58452705	58453705	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49862.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	7.45979792384327	7.50807921374882	7.05973341496158	7.60791830507873	7.562495430934	7.15836916688439	0.145760569417732	0.588074299157764	0.876188269456179
Merged-chr11-100617796-2	chr11	100617296	100618296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	PB1D10|SINE|Alu	2372.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	3.95768294335273	3.76410443563402	3.94875118406881	4.39555761177073	3.65743857038129	3.69726893798576	0.227384084878164	0.698229351514302	0.920276248984972
Merged-chr4-3799833-1	chr4	3799333	3800333	+	635.0	f1_balb.idr	Intergenic	Intergenic	35822.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.15459143810505	3.18765819699124	3.15089790391809	3.11000114294644	2.9818720638645	3.68748089198078	0.510190315243426	0.464221163245052	0.816235256119365
Merged-chr5-125358400-4	chr5	125357883	125358883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17289.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.21568139965924	5.94151046056839	6.15967326317191	6.30398702006087	6.28135559480664	6.51976541031819	0.43082348170324	0.135238053587867	0.491349574837972
Merged-chr11-75657858-2	chr11	75657358	75658358	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008659, exon 3 of 32)	exon (NM_008659, exon 3 of 32)	1843.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	2.487328618643	2.24399516047284	2.44157930298787	2.44368867635791	2.42442953042062	2.57868444610258	0.539085315984476	0.513117787961707	1
Merged-chr2-160144176-3	chr2	160143674	160144674	+	704.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	127521.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	2.9670608702131	3.00436761786302	2.98132522093094	2.94988084580015	2.99000905086997	3.11154850509646	0.143772782879962	0.82920074285371	0.959990063227229
Merged-chr5-88572087-3	chr5	88571615	88572615	+	737.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	7075.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	5.03183545048993	4.89709004219459	5.29713381031445	4.93380534656082	5.0110895925578	5.07904838773149	-0.143120669253797	0.706670367159961	0.923092605686828
Merged-chr12-105731205-5	chr12	105730708	105731708	+	838.47998	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 5 of 17)	intron (NM_030187, intron 5 of 17)	25226.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	3.52547003287084	3.54923913072334	3.74075622755948	3.83935391384444	3.81674549265985	3.65329467090553	0.593380959877245	0.277514434310644	0.674707488501667
Merged-chr2-18310450-2	chr2	18309943	18310943	+	769.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 3 of 12)	intron (NM_001190817, intron 3 of 12)	82387.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	3.49364056109854	3.61712728217527	3.58336989850509	3.4787821815844	3.14794910520192	3.54862058648862	-0.637028023796445	0.296540382543752	0.693171366955017
Merged-chr13-104286051-4	chr13	104285525	104286525	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1810.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	7.02354866834089	7.04575165644847	6.7640048218375	6.95043522970927	7.36440063537158	6.82287250371798	0.186976794036961	0.504334359119746	0.837634550662405
Merged-chr6-91510447-4	chr6	91509924	91510924	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	5464.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	3.28319990776174	3.17148368727296	3.13182683466063	3.41678214789882	3.50917012016678	3.54712715933571	1.15124783101907	0.0610239566789185	0.320095907920283
Merged-chr9-22814924-3	chr9	22814425	22815425	+	714.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	339210.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	4.32811966268663	4.12858289497644	4.3242818979525	3.72552940422461	3.64762930129446	3.88694053095883	-1.581613338375	0.00215925615111992	0.0327143819778562
Merged-chr7-111373589-4	chr7	111373098	111374098	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250923.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	3.52024703194056	3.56560380524837	3.58616946709962	4.26264742207051	4.49329330360802	4.27734536918952	2.54446518253214	2.7090809292047e-06	0.000129848620943125
Merged-chr13-111942099-4	chr13	111941609	111942609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	74173.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.52363495361758	5.07360285407252	5.198770284328	4.95676110538053	5.13503767427909	4.90497241163589	-0.562765487154622	0.144471062397304	0.507214386763159
Merged-chr16-87656977-2	chr16	87656477	87657477	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41977.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.86129834843681	2.83525641912086	2.99972976766214	2.53909182551246	2.37265747994942	2.84165952166469	-1.73853929227254	0.0410046279964623	0.252640732049584
Merged-chr2-160152329-4	chr2	160151809	160152809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	135656.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.14073455350305	6.71446778471451	6.68937777542428	6.69010143407197	6.98242160595257	6.84242121641129	-0.038268559627882	0.891351955959776	0.974795270136864
Merged-chr1-171827302-2	chr1	171826802	171827802	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12395.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.90994642595692	6.0348631619979	5.88966597134239	6.09375488325417	6.06734744172397	5.65508827943692	0.029443942037811	0.925220458437508	0.983166193538686
Merged-chr6-42344410-4	chr6	42343976	42344976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5352.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.76370838461612	6.69966318593977	6.39100449279264	6.69270032663775	6.69081029275738	6.8689519258644	0.172428286905213	0.522135606523995	0.847473464378842
Merged-chr7-107047771-4	chr7	107047304	107048304	+	873.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11668.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	3.07709450532981	3.20331898482249	3.14960973793356	3.00011133468621	2.9128217554167	3.04626660746335	-0.738078231969743	0.265210258899282	0.662995749469502
Merged-chr16-16855975-2	chr16	16855475	16856475	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	8010.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	3.70612447513505	4.0826696159142	4.35660310879341	4.38384575273965	4.43559118629499	4.42349820189185	0.949254756029587	0.0633577884233445	0.32787330425584
Merged-chr9-104192788-2	chr9	104192288	104193288	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 30 of 56)	intron (NM_001359740, intron 30 of 56)	-66145.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	3.32400803527885	3.32086024337111	3.49241738215005	3.31038803698464	3.14732747783323	3.56200434488575	-0.138097610264011	0.824564875499229	0.958596193929081
Merged-chr6-90463665-4	chr6	90463172	90464172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 1 of 2)	CpG	1096.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	4.74107506377872	4.79035900872071	4.12372166148054	4.69358170545967	4.31976501711706	4.02816044767383	-0.51908875818372	0.333874923265792	0.72461630754845
Merged-chr4-58909927-4	chr4	58909440	58910440	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	L1MB3|LINE|L1	1990.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	3.55024013667766	3.59407468401459	3.2200826866303	3.41985754150898	3.44827902730705	3.47166858079635	-0.101597571855142	0.867354448215726	0.969325012731494
Merged-chr1-184675931-4	chr1	184675414	184676414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36583.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	5.15211855726895	5.17042690976941	4.69185878543798	4.41713195463398	4.30117666666597	4.403174479963	-1.57616129976886	0.000254734444077322	0.00610482247200051
Merged-chr19-44385333-4	chr19	44384839	44385839	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	22370.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	6.39029246510997	6.11932039784452	6.0981942174258	6.41260938521559	6.21100446851333	5.94389596880406	-0.00550878213881686	0.985610600618742	0.99691465847822
Merged-chr7-100431307-4	chr7	100430770	100431770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 22 of 32)	intron (NM_001017985, intron 22 of 32)	-41721.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.79406167726809	6.51915320801792	6.56158249297468	6.95796125739823	7.1535572891613	6.96443843530655	0.61856001745384	0.0171524015011754	0.145760557140357
Merged-chr11-62542135-2	chr11	62541635	62542635	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2874.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	6.65302339159755	6.03889406644132	5.84152355438668	6.52036042518037	6.44453096200338	5.87730373543688	0.134725363692442	0.71752474829278	0.927113669510706
Merged-chr8-61529697-2	chr8	61529197	61530197	+	654.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 16 of 21)	intron (NM_001293772, intron 16 of 21)	41963.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	3.24759170857299	3.04653580742943	3.40787448346177	3.27202069372546	3.34953016521428	3.19927112405671	0.174706415485238	0.784577872374256	0.947684695291087
Merged-chr14-32159846-4	chr14	32159316	32160316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-71.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	7.0036825473836	7.08265275614113	7.15350590903963	7.13288236185344	7.43034413575619	7.09777722774363	0.240438895663998	0.333865246867695	0.724614206827878
Merged-chr11-68431430-2	chr11	68430930	68431930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-695.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	7.51651405527567	7.83477742392009	7.5849669572271	7.36766481478978	7.7165282065787	7.43987168669418	-0.192260536793138	0.437713271937984	0.800167979687058
Merged-chr7-16401130-6	chr7	16400635	16401635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-61.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	8.28981953030689	8.44923999756326	8.48975694644607	8.45245406580077	8.48817833082093	8.67877211604539	0.181523388810203	0.387490468245873	0.76768118438771
Merged-chr12-31610525-3	chr12	31610018	31611018	+	839.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007530, intron 5 of 6)	intron (NM_007530, intron 5 of 6)	24079.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	2.86382219976913	3.14533773316159	3.16873660888705	2.81730504497183	2.77091420042228	2.95444053128095	-1.0625319177405	0.135943463798096	0.492879465608365
Merged-chr11-5485432-4	chr11	5484934	5485934	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35207.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.22029206456852	5.60950379113896	5.37840031265228	5.61256193913516	5.64210975953007	5.31349282778966	0.2357665364637	0.504477611461258	0.837727751066034
Merged-chr6-50944026-3	chr6	50943547	50944547	+	891.955566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	167932.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	2.44559630974943	2.33857281930472	2.65760930141306	2.85017260667478	2.59087241138012	2.79331142725297	1.55620962754055	0.0577999439794483	0.310685900429065
Merged-chr6-54942945-2	chr6	54942445	54943445	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	28716.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.54553694669984	3.67105207745712	4.00259658274391	3.86816466154206	3.41651068236643	3.83908666867487	-0.0918011379649295	0.876601866714073	0.971344419120637
Merged-chr10-42478553-4	chr10	42478078	42479078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145743)	promoter-TSS (NM_145743)	-13.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	7.33948878853211	7.68916826513667	7.24204506667857	7.33152971030928	7.4238913006463	7.37979793940345	-0.098075785370673	0.69417915230702	0.919202859234248
Merged-chr1-151002125-4	chr1	151001629	151002629	+	866.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-8694.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	4.40205062682381	4.67125604072744	4.19775221850055	4.63524957647727	4.84749066254033	4.59506690978122	0.610815177651378	0.177280801692657	0.55822004025504
Merged-chr2-158768607-4	chr2	158768096	158769096	+	811.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027975, intron 1 of 3)	CpG	497.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	3.71156172404989	3.66505268509624	3.30571360907307	3.74242511728821	3.76955187434518	3.67512407441777	0.50663095503919	0.38917462328481	0.769015431167891
Merged-chr5-21295133-2	chr5	21294633	21295633	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 17 of 18)	MTD|LTR|ERVL-MaLR	-77540.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.32300055923185	3.39513398629578	3.48974822218081	3.38955046410191	3.14861569369745	3.39923109927706	-0.353882631918094	0.562659218390528	0.865755360453189
Merged-chr11-107441195-4	chr11	107440709	107441709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	29511.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.2104741040803	5.32195803191783	4.93504079475393	5.11570813519666	5.46096595300895	4.92252793942508	0.0541501990669211	0.891550078632052	0.974819081679788
Merged-chr18-84848687-3	chr18	84848189	84849189	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-2649.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	5.83379325615696	6.08448980806062	6.01753904152094	5.39752575380057	5.7965985097617	5.57635460683798	-0.667467313114045	0.0422201603325017	0.257393630341681
Merged-chr1-181395391-2	chr1	181394891	181395891	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160212, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	42763.0	NM_001160211	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	2.52016219107845	2.48739976140986	2.49060000389789	2.91907543685966	2.62371111830592	2.88422726948336	1.78089531461966	0.0255789537030487	0.189593228195553
Merged-chr15-68258550-2	chr15	68258050	68259050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	CpG	306.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.49111946633866	8.6234205935158	8.35820630926201	8.3781815960346	8.47456611283792	8.32279508867121	-0.143679263451998	0.493075230712879	0.831208279358962
Merged-chr12-55399169-2	chr12	55398669	55399669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	CpG	344.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	7.93591986966672	8.56081945914465	7.99786119872862	8.12017875962894	8.5174014613484	8.29973897362713	0.170331673560022	0.528763646698937	0.850585575598857
Merged-chr13-17983370-4	chr13	17982867	17983867	+	984.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9984.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	4.04828023380397	4.14448342470239	3.86878195720126	4.41246003622216	4.37348094042878	4.10036499443764	0.76501268147404	0.119288164202843	0.461750746246286
Merged-chr17-27850745-5	chr17	27850243	27851243	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5764.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	7.97086394454592	8.00532850059508	7.23962587277631	7.97306140974107	8.21957161334689	7.54492246717968	0.222206020875717	0.474389042681598	0.82139231300766
Merged-chr14-55886114-4	chr14	55885620	55886620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027143, intron 2 of 7)	intron (NM_027143, intron 2 of 7)	1178.0	NR_138134	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	6.99209394499769	7.00487614204627	7.2710533943409	6.95146615694516	7.16035197683096	7.20407853892546	0.0309199754676695	0.90192915501121	0.977365418427752
Merged-chr1-195092319-4	chr1	195091805	195092805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132621)	promoter-TSS (NR_132621)	-57.0	NM_010778	17221.0	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	4.46932017167057	4.60782203742777	4.22583920426933	4.31095295130972	4.14828079338363	4.04234652071596	-0.737746371091791	0.119205478116693	0.461599470547924
Merged-chr18-60501365-7	chr18	60500894	60501894	+	940.552368	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134133, exon 1 of 2)	5' UTR (NM_134133, exon 1 of 2)	589.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	4.95592550558663	5.10477403889155	4.9616821428731	4.40435228416094	4.34715327827854	4.22811705360244	-1.62825568752243	0.000125202486421963	0.00343143889663988
Merged-chr13-37857938-4	chr13	37857451	37858451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-30483.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.7190052678295	7.85146790420144	7.72710663516072	7.4935132732749	7.85181493476929	7.31662400766815	-0.264231424862481	0.295112513903748	0.691990077927385
Merged-chr16-4210464-3	chr16	4209960	4210960	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	2944.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	2.75893829242312	2.81807706243001	3.07689894669667	3.04296737271058	2.89557147917829	2.85234367412716	0.2333006152014	0.742676838520218	0.935349168989816
Merged-chr1-180302910-4	chr1	180302398	180303398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27578.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	6.94323985953829	6.6819573243397	7.08764381788478	6.87943347175346	6.92383281007148	7.29131842556613	0.200121034875327	0.467940739673708	0.818205691164444
Merged-chr1-52117087-3	chr1	52116558	52117558	+	866.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2380.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	5.81613138518676	6.44305180838416	6.3549547774585	7.22862587488864	7.63305377412089	7.08506643855444	1.72664043852693	5.34019969218122e-08	4.10293015685148e-06
Merged-chr4-101648832-4	chr4	101648324	101649324	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	1041.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	6.74024341391659	6.75175122553627	6.90532428782644	7.02491782930799	7.31912115376313	7.08446291749672	0.550189996318047	0.0287325046509944	0.203176191637626
Merged-chr2-46442169-4	chr2	46441690	46442690	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	745585.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.11573366772116	6.4098015273494	6.72899494726386	6.49782048974734	6.44169653320875	6.44651682445271	0.0493987399073112	0.868387921500181	0.969642939011354
Merged-chr8-25537904-4	chr8	25537401	25538401	+	984.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	18182.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	4.16923175603274	3.76297170588493	4.2508820277754	4.51975395286168	4.2424594559317	4.27423873923673	0.768407724927215	0.127488540257375	0.477271790294292
Merged-chr4-131922233-3	chr4	131921789	131922789	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001201367, exon 1 of 1)	exon (NM_001201367, exon 1 of 1)	518.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	2.77259498482266	2.69293767454313	2.8261709489971	2.58780455454507	2.36033556460242	2.78013573450418	-1.02691499310327	0.20755183167719	0.598331793355039
Merged-chr9-59770597-2	chr9	59770097	59771097	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	5S|rRNA|rRNA	19423.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	2.90906469834887	3.09131174631935	2.97903503553603	3.41592605543516	3.23718456658714	3.29362178558776	1.39124194823283	0.0362284547377757	0.234153896366385
Merged-chr15-12356126-1	chr15	12355626	12356626	+	831.0	f0_balb.idr	TTS (NM_001081064)	TTS (NM_001081064)	34630.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	2.93822809019195	2.85476358281021	2.8502262708478	2.51075350189109	2.53929751168119	2.92290339852193	-1.16984482084903	0.139994702661512	0.500025673938934
Merged-chr5-105560008-5	chr5	105559580	105560580	+	951.5200199999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	40609.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.2541217447538	4.80750723860798	5.01218208607171	5.41452251669164	5.49676695097551	5.00312349134159	0.598333170301315	0.130015013222879	0.482195010397444
Merged-chr16-16086945-4	chr16	16086449	16087449	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	59902.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	5.21699397419776	5.02601754090988	4.87816791316925	5.23223085477522	4.86981233655664	5.1593037931042	0.0704329929493667	0.855822944305636	0.966258544020232
Merged-chr1-51517606-3	chr1	51517157	51518157	+	765.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-39258.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.91275994367953	5.06412974999703	5.00302515829259	4.88387095474274	4.56254196925994	4.99873124803468	-0.399844786357048	0.318088612501973	0.711817713144205
Merged-chr3-103207652-4	chr3	103207148	103208148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35993.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	6.61588097896268	6.25779294766158	5.92871363503793	6.80959497371033	6.8364464275618	6.44518838143296	0.647567385637782	0.0432794255521654	0.261221125877309
Merged-chr3-130795321-2	chr3	130794821	130795821	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64923.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	4.65153155716199	4.57522808603312	5.08306676643841	4.46459667556341	4.46073353186832	5.05447679238858	-0.231892183664647	0.619902461156273	0.889979882381751
Merged-chr9-37348368-4	chr9	37347841	37348841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081429)	promoter-TSS (NM_001081429)	51.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	7.53151486200206	8.01445489577458	7.47978956536132	7.86030152005882	7.94393929347356	7.97019228777067	0.311960423946811	0.219738955687145	0.614074140274511
Merged-chr11-72813103-2	chr11	72812603	72813603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045536, intron 1 of 54)	intron (NM_001045536, intron 1 of 54)	16877.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	4.80332895098949	4.58534194485065	4.61448261045625	4.75380828937864	5.01080500114461	4.80247602387158	0.443165547254847	0.274370063294278	0.671721462492876
Merged-chr4-148625889-3	chr4	148625389	148626389	+	932.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003898, intron 1 of 6)	intron (NM_001003898, intron 1 of 6)	1107.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	6.61773512538088	7.01300044455541	6.37192676740846	6.47030179668369	6.54246725098324	6.24304338477012	-0.437658546417384	0.152329861335773	0.520263755512759
Merged-chr17-91390430-3	chr17	91389928	91390928	+	669.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-297626.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	3.53228567058951	3.90723387568662	3.86237161506454	3.39448579638854	3.14945523053261	3.35442397085389	-1.81569459483373	0.003598762363227	0.048134675891238
Merged-chr2-155236930-1	chr2	155236430	155237430	+	1000.0	f1_c57bl6.idr	exon (NM_001291108, exon 1 of 4)	exon (NM_001291108, exon 1 of 4)	322.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	7.29644186917676	7.74916542037902	7.37881951984493	7.03527385546169	7.01308410929353	6.69163029436182	-0.843528850800224	0.00184992731695416	0.0290760771041031
Merged-chr3-81126893-4	chr3	81126398	81127398	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90482.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.79466407198185	5.77151571901635	5.78166276576033	5.66861247076572	5.60156630288669	5.98344522173271	-0.0611200869544202	0.847517258515953	0.964318271116593
Merged-chr4-44011924-2	chr4	44011424	44012424	+	940.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-719.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	4.93251753941277	5.14491969367504	5.20795850651687	4.9576970386036	5.14315916502613	4.85098688150013	-0.20100910574028	0.598547534874228	0.880808927175713
Merged-chr11-115165140-4	chr11	115164640	115165640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1799.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	5.6095044142963	5.1126550569506	5.14205695822898	5.48033843400752	5.5086238620431	5.13556285384864	0.152069064272304	0.691631767088777	0.918398695262194
Merged-chr16-55748055-2	chr16	55747555	55748555	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	74083.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.97217647216509	6.10188778193595	5.97278826693248	5.94983492222034	6.27513743590102	6.14567821495708	0.197808207622869	0.504035205040447	0.837420592739604
Merged-chr5-105652084-3	chr5	105651591	105652591	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47878.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.48797624443656	5.31480537237799	5.33110152838443	4.38469244828737	4.47416169344648	4.36664325913036	-2.18873594454677	1.01506458922683e-07	7.23129232366322e-06
Merged-chr5-29955460-2	chr5	29954960	29955960	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57654.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	3.80501216947833	3.7652912723839	3.85158593624614	4.10395998691549	4.19622374579342	4.16362140683431	1.06278609064073	0.0315139375728214	0.215063846872335
Merged-chr2-93566002-2	chr2	93565502	93566502	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76432.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	2.76816104104453	2.73116401967758	2.85189318562682	2.88528014717436	3.18074657559663	3.10339104363673	1.39324489344284	0.0504197273034514	0.285731724937838
Merged-chr5-100585238-4	chr5	100584747	100585747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-13042.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.37669870768378	4.62644946561472	3.96983999604296	4.88431016942815	4.50611352993222	4.5009428003813	0.690092038671549	0.173390511757178	0.552199885159617
Merged-chr17-17608799-2	chr17	17608298	17609298	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	15691.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.7217467062296	3.89705236382626	4.13612279769977	4.04653214995858	4.17264069599872	4.2470882549188	0.696166581430336	0.169261573181982	0.545964641046737
Merged-chr10-95941949-4	chr10	95941429	95942429	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	1266.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.28506171989228	5.46736402636677	5.31424129575217	5.45730856494971	5.32233307351173	4.86636800132588	-0.215829691842242	0.569162040268387	0.8688875602138
Merged-chr3-89845260-2	chr3	89844760	89845760	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	13890.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	3.33117294236047	3.07803482957594	3.1552021857345	3.39440172739593	2.99238437565328	3.34287578030079	0.235841191013737	0.723365707440028	0.92905587294585
Merged-chr7-3643631-4	chr7	3643146	3644146	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	5.37519911741353	5.79394493957915	6.06764714028471	5.93357349370526	5.98740488328376	6.18814630239335	0.476754151135539	0.165779416205175	0.540926773993184
Merged-chr5-135466082-4	chr5	135465582	135466582	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-71536.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.49813717602143	6.74177407460517	6.69701040163097	6.52617446782473	6.19943037961945	6.59598394042919	-0.332948877737655	0.238386920878358	0.635087852990313
Merged-chr9-41083517-2	chr9	41083017	41084017	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-4011.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.15909965447906	3.08055978309779	3.24734595701713	3.38752617009318	3.46346981085066	3.20178940244711	0.830159305698275	0.187201453370979	0.572128204607461
Merged-chr5-147408986-2	chr5	147408501	147409501	+	786.766663	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	3.10243253904769	3.27290135547684	3.27506847498932	3.5064052230466	3.57886359146021	3.46105845232666	1.18984037150851	0.0507665705121458	0.286988572537172
Merged-chr1-173742467-4	chr1	173741953	173742953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-644.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	8.56162888661753	8.83164130633906	8.42778255741931	8.30301923338286	8.6233339259596	8.15952646338091	-0.330542701037357	0.175404602147432	0.55528329536918
Merged-chr4-133675230-4	chr4	133674789	133675789	+	733.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2123.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.4206119209115	5.985660837742	6.31165821381357	6.28845943827099	6.68228599972783	6.42852044022993	0.383224680907523	0.206697982224167	0.597309359759271
Merged-chr10-99128018-6	chr10	99127510	99128510	+	895.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 3 of 12)	intron (NR_153333, intron 3 of 12)	19875.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.36155972907546	4.38452646241774	4.00775358186575	3.96745029691337	4.00730093402363	4.02712644857647	-0.773156693889007	0.115540663542107	0.45380729440697
Merged-chr15-66817185-4	chr15	66816670	66817670	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	14659.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.9734873380802	6.98953088758156	6.90999489706812	6.49603456932837	6.6311691636254	6.79486969763188	-0.498016170649784	0.0497695281046077	0.283762018262861
Merged-chr16-94525284-2	chr16	94524784	94525784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	B3A|SINE|B2	1345.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	6.72122803639399	6.82392790417941	6.84719999021712	6.75645858162322	6.80534226898062	6.7236474690248	-0.0486900604138536	0.844445038812731	0.96373428957366
Merged-chr9-118657285-3	chr9	118656781	118657781	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	ORR1A2|LTR|ERVL-MaLR	50572.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.41903210883842	4.37858137458444	4.8651238422963	4.7538465728016	4.76102416395838	4.85972127262354	0.54828640259021	0.20285418879337	0.592772302593993
Merged-chr6-38381443-4	chr6	38380923	38381923	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153600)	promoter-TSS (NM_153600)	-101.0	NM_153600	264134.0	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|Ift56|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	4.9811176072467	5.28525553636448	5.20618888300118	5.44854412276277	5.1242186999421	5.17082462152969	0.189813121608994	0.608265408756532	0.884952472844764
Merged-chr8-115425373-2	chr8	115424873	115425873	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	281521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	2.21806432382996	2.15116978951883	2.30869573054327	2.36272774317795	2.1517428928759	2.50988887122526	0.80520936695778	0.356783385258803	1
Merged-chr6-113238663-4	chr6	113238168	113239168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362185, intron 1 of 16)	intron (NM_001362185, intron 1 of 16)	825.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	7.01407116484852	6.98184392951538	6.64492196718182	7.0013397521882	6.92425210600574	6.57930773197367	-0.0667311982376505	0.809257698268441	0.954721853010197
Merged-chr6-137411137-2	chr6	137410637	137411637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	416.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	7.73454346744999	7.57727822911298	7.21884639829377	7.69754778252921	7.59746815835675	7.43978470689237	0.0705937157822364	0.780948110412922	0.946088322917104
Merged-chr14-73446140-3	chr14	73445644	73446644	+	977.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60855.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.20308923016545	7.01623967962301	7.145016389936	6.98982453801565	6.96624659418583	7.03801887480423	-0.192112238284171	0.421764573305011	0.790695218522686
Merged-chr17-56325848-4	chr17	56325320	56326320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357909)	promoter-TSS (NM_001357909)	-230.0	NM_172132	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	6.47222067978145	6.4468082291915	6.56701805140376	6.7445139641765	6.66306275321754	6.81447934741458	0.39030968350249	0.128171137011994	0.478813115193111
Merged-chr13-49243591-4	chr13	49243089	49244089	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	4705.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.46559754108957	4.25827609472621	4.71914752478243	4.16586312239733	4.17490281952946	4.52458638867823	-0.508681381603466	0.283908985766494	0.681538828909424
Merged-chr3-55129515-4	chr3	55129025	55130025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 8 of 8)	MER73|LTR|ERVL	-7814.0	NM_001290138	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	6.6032668052346	6.71597378696156	6.40339941909276	6.8074066437321	7.09682427591851	6.66499263658044	0.455532390523302	0.101983787248825	0.42592499918641
Merged-chr19-11808636-4	chr19	11808129	11809129	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	10774.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.26415684279458	4.88973989675571	5.24636677320028	5.03740901043188	4.88059061383294	5.01585961982474	-0.351531709868271	0.359142517486752	0.745373904894685
Merged-chr10-22747798-1	chr10	22747298	22748298	+	613.0	f0_balb.idr	Intergenic	Intergenic	-16351.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	3.2455508851261	3.42126540046835	3.53967123445607	2.93666834431331	2.95819755001013	2.93201000137419	-2.09745785607269	0.00280429777421369	0.0399691690984538
Merged-chr4-32250453-4	chr4	32249947	32250947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166988.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	8.28085654806036	8.77646403517047	8.17139892765327	8.29289840391885	8.70585557626763	8.07588225567875	-0.0705197539646796	0.802486512476975	0.953198534492307
Merged-chr10-39770772-3	chr10	39770279	39771279	+	896.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	B2_Mm1a|SINE|B2	38619.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	4.1539415275429	3.93485650792187	3.9068011944746	4.47643908216448	4.5372840311436	4.2820263748997	1.18928716379685	0.0132936402966331	0.122476751846967
Merged-chr17-31090666-2	chr17	31090166	31091166	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.79662913487057	4.89731952719916	4.65221485772631	4.51700599217368	4.67806228043812	4.59407480686753	-0.448000651784253	0.273878993674674	0.671305269086912
Merged-chr1-149893071-2	chr1	149892571	149893571	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	MTC|LTR|ERVL-MaLR	29368.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.75101244463917	3.4413292672871	3.64968767101037	3.50450395091381	3.54882339741466	3.50495204556313	-0.349837209709709	0.541598018553565	0.856866097372447
Merged-chr4-150155895-2	chr4	150155395	150156395	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085529, intron 4 of 11)	ORR1B2|LTR|ERVL-MaLR	6923.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	3.0694737408525	2.77994380296095	2.80328546571709	2.94579380538604	2.87049780232857	3.1741731661913	0.487196568943871	0.498074494260869	0.833856267944725
Merged-chr8-35565756-1	chr8	35565256	35566256	+	581.0	f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-22042.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.50727192204953	4.8134955334625	4.80425472786932	4.45139391122648	4.53238034618533	4.68267857490163	-0.381905340632983	0.367466255800772	0.752421000877786
Merged-chr5-124113155-2	chr5	124112655	124113655	+	933.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361483, intron 2 of 5)	intron (NM_001361483, intron 2 of 5)	834.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	4.88001743837746	4.73190964185999	4.59011105092152	4.53577310859562	4.61121445462184	4.99184466613715	-0.0655515340542087	0.877764516984971	0.97172813295662
Merged-chr6-108213787-4	chr6	108213280	108214280	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 1 of 61)	intron (NM_010585, intron 1 of 61)	684.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	5.09269799941892	4.94200488007637	4.91766676874136	5.22808952094917	5.37946864154502	5.2302753437798	0.612992296697817	0.0894659789187174	0.397410056260337
Merged-chr10-39443320-4	chr10	39442838	39443838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MLT1B|LTR|ERVL-MaLR	73539.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.28103881228814	5.9678362813651	5.93418035176483	6.27959556989295	6.10617780518327	5.9713758894193	0.0887906220284757	0.771162721342835	0.943589366902852
Merged-chr2-174432630-2	chr2	174432130	174433130	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 3 of 5)	intron (NM_022325, intron 3 of 5)	6409.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	3.05493995475602	2.91394231978218	3.21435978968933	3.05204029738408	3.04564300394212	3.17440710628277	0.126029257675056	0.849492524426396	0.964686793473289
Merged-chr11-53737760-4	chr11	53737279	53738279	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16985.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	4.14738244793579	4.003957058921	4.06169874323516	4.10885930159934	4.24366596010486	4.22347179091657	0.345721523023304	0.464667135868927	0.816459397744841
Merged-chr8-22935076-3	chr8	22934581	22935581	+	566.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 16 of 17)	C-rich|Low_complexity|Low_complexity	-39755.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.62396831387292	4.61707344676406	4.37172556019878	4.39243926989901	3.94742759405475	4.35017074786316	-0.814649589774285	0.0867927454040466	0.390328113694731
Merged-chr3-129948609-4	chr3	129948117	129949117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	21589.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	3.98891452202641	4.07937320165056	4.27302534180905	3.57704161636201	3.7987794037143	4.21519176433919	-0.692297945429025	0.211363186256074	0.603905867353298
Merged-chr7-101051981-4	chr7	101051436	101052436	+	909.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39883.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.50236563822732	4.19344771617714	4.00679292070236	3.91839502885915	3.72954358416469	3.97549959168094	-1.13986279056909	0.0280132015213373	0.20004483970026
Merged-chr8-120739602-4	chr8	120739071	120740071	+	855.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 1 of 8)	intron (NM_001301811, intron 1 of 8)	932.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.78963675010298	5.9307608899476	6.30265090632616	6.33517969652315	6.24011200787374	6.07666235682731	0.36282625351298	0.243701972353384	0.64086208327192
Merged-chr13-76256597-4	chr13	76256127	76257127	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128334.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	4.39388193034292	4.36667222795989	3.87739156636313	3.39504472477786	3.65861462128801	3.54646070525092	-2.25800528655752	0.0001828993901729	0.00465139868605554
Merged-chr9-40652924-1	chr9	40652424	40653424	+	620.666687	f1_balb.idr	Intergenic	RMER17A|LTR|ERVK	-33040.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	3.58572327582737	3.20295289892447	3.36888795743505	3.15652695834087	3.03082988141989	3.27186270257472	-1.0192029752644	0.117291746337915	0.457331522238446
Merged-chr18-39542990-3	chr18	39542493	39543493	+	754.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-55748.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.91456224127548	2.71432215301885	2.85916741980643	2.78636984919531	2.85426290899025	2.99070543916813	0.226250345980304	0.75021525140554	0.937550343416037
Merged-chr3-87000346-3	chr3	86999887	87000887	+	957.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1047.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	5.81901970119865	5.60131230979358	5.74830769806904	5.5689788115134	6.05836964482465	5.70480218471862	0.14886902458732	0.657076841081785	0.904749338441592
Merged-chr6-17640241-2	chr6	17639741	17640741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	ID_B1|SINE|B4	3231.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.03402291226125	6.41180514289593	5.84060357161147	7.0139274831914	7.08692644729919	6.52002898350559	1.23821103790363	0.000139123019949402	0.00373924899251632
Merged-chr2-173021899-4	chr2	173021402	173022402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019547)	promoter-TSS (NM_019547)	0.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	5.39141697429954	5.33879801797391	5.51404522813823	5.430293547062	5.18808847252562	5.17688702244117	-0.276793659231965	0.424992840040556	0.792848465017231
Merged-chr2-117087717-4	chr2	117087234	117088234	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33337.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.59750727067784	4.52204165311226	4.50040026618824	4.54101313581612	4.39255924505756	4.9383255123219	0.214480603301616	0.629422347527659	0.894228388402321
Merged-chr17-5578461-2	chr17	5577961	5578961	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	85861.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.59921453317823	3.45305018866845	3.78818969261358	3.7483581071261	3.06127890200335	3.6597565692488	-0.319397945392938	0.633746184411534	0.896084021759701
Merged-chr18-23436544-4	chr18	23436045	23437045	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	21136.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	4.36555068551282	4.292312006014	3.82710453158655	4.09451689023221	3.90374412466041	3.60813874187151	-0.904912511615868	0.116890549196335	0.456523295823922
Merged-chr9-119102445-4	chr9	119101965	119102965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-13.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	6.65986467001512	6.78615272029615	6.72740635734651	6.73604899137912	6.93285844844154	6.81672239192332	0.170286111775202	0.499242726255489	0.834374209457624
Merged-chr15-102510799-4	chr15	102510311	102511311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358844)	promoter-TSS (NM_001358844)	-111.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	5.43833139294507	5.55698257450677	5.52534932367676	5.44739702883881	5.25512969604694	5.2521794392851	-0.361159197559996	0.282909833622537	0.680829518627489
Merged-chr19-42753395-4	chr19	42752921	42753921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-646.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	7.45716051723932	7.6699108116827	7.60563635433413	7.52790545632718	7.83093785592307	7.57655395349164	0.113092561080552	0.631001488133907	0.894974662240063
Merged-chr7-142533178-4	chr7	142532761	142533761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011288, intron 1 of 4)	CpG	144.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	6.68559067467188	7.02441061581879	6.62849534461791	6.9143989912219	6.71144525739116	6.67071594208743	-0.0443349553414073	0.871124575153103	0.970222087171093
Merged-chr3-130690918-4	chr3	130690379	130691379	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18565.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	3.73192301522444	3.64004994090171	3.65382995181657	3.64640498459309	3.86412013247346	3.72435691757864	0.255005129775848	0.636808402507005	0.89723915288953
Merged-chr19-12445657-2	chr19	12445157	12446157	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-15122.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.36598901156811	6.14731278267474	5.63876615969276	5.64437336617785	5.82762841571548	5.89137316669024	-0.538727276815412	0.116143549327716	0.455079356182438
Merged-chr6-91473591-4	chr6	91473099	91474099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	-152.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	6.25587852206294	6.4949806023766	6.34543973790552	6.49177542001952	6.42769728744676	6.03586273672181	-0.0431058077018515	0.883637127020601	0.973424570255785
Merged-chr5-137826587-4	chr5	137826083	137827083	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	9695.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	4.66197277386535	4.62910350379219	5.1122581981748	5.28973268175363	4.79818420211302	5.0450916458203	0.545061347289457	0.199140421704071	0.587508020463492
Merged-chr10-24132541-2	chr10	24132041	24133041	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16748.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	3.72163940221558	3.72129555162564	3.84288248716041	3.51444409285828	3.6551300046553	3.71290529463979	-0.442784323798105	0.415464234872417	0.786449212986876
Merged-chr2-16356401-6	chr2	16355881	16356881	+	953.2315060000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026162)	promoter-TSS (NM_026162)	77.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.82640707128417	3.98925952082549	4.11238312352084	3.42254397037931	3.25562152555007	3.60524461262877	-1.98283045022422	0.000839845336181304	0.0157108477367298
Merged-chr15-95905828-2	chr15	95905328	95906328	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-75756.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	3.00075294585099	3.07079670887675	3.5901012677505	3.42507372627577	3.35720518120031	3.65928524203349	0.938389753476464	0.166919929293708	0.542435988153521
Merged-chr13-37958753-4	chr13	37958247	37959247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	35461.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	7.85892363687929	8.01130993260779	7.82028279243345	7.83311416527269	7.95447804679728	7.45592901739389	-0.181848721582961	0.457050685539271	0.811993709825292
Merged-chr3-95629958-3	chr3	95629448	95630448	+	829.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001026212, exon 3 of 3)	3' UTR (NM_001026212, exon 3 of 3)	4968.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	4.54462037340804	4.5745895065506	4.89588811545386	4.59737168981022	4.94822529966082	5.12249975805043	0.528229091383993	0.216425647389753	0.609914829912841
Merged-chr10-7681107-4	chr10	7680622	7681622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	13.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	8.5549817911253	8.33028354764229	8.2172310055507	8.49209092837511	8.06644278060149	8.11622609546659	-0.192879548960894	0.422670544930638	0.791448507539156
Merged-chr2-162932423-4	chr2	162931916	162932916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	908.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	7.291666113033	7.4667195738761	6.86985582270433	7.05927944265888	6.76717987608017	6.97233401656826	-0.466579154531241	0.0930392957430768	0.406374548333771
Merged-chr2-49734614-4	chr2	49734115	49735115	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53071.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	3.08158699360619	2.91433691301584	3.12296008341623	3.01816530503322	3.0367943997478	3.0194861257234	-0.0629231699706244	0.924675832968123	0.983038108928445
Merged-chr2-33872107-2	chr2	33871607	33872607	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	RMER4B|LTR|ERVK	15839.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.06291734846875	4.08888756188277	3.86251592709904	3.93003994242708	4.15927274876925	4.30641669123771	0.353900789162265	0.481126555124854	0.824953741430059
Merged-chr9-106308374-4	chr9	106307882	106308882	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27321.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	7.27134347223999	7.03858843311835	7.25399438860437	6.92291461558138	7.24550423223065	7.30019940244361	-0.0360263412582987	0.887608982510855	0.973836995667151
Merged-chr8-125487205-2	chr8	125486728	125487728	+	786.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	5605.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.20650239368708	3.14689884660847	3.16695792117858	2.97067223081656	2.9002035060131	3.12387329966009	-0.815266225280137	0.219032210684519	0.6131487076651
Merged-chr3-146154050-4	chr3	146153552	146154552	+	981.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	3878.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	4.9625597679144	4.93256129311591	4.49124786058014	4.60098124037278	4.40597000324178	4.42140635090276	-0.822323912430829	0.0596761816538317	0.316235875878998
Merged-chr2-4558851-2	chr2	4558351	4559351	+	647.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-903.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.19330512803987	6.35215577251683	6.14907091212658	6.54099673302593	6.5473308751623	6.7039590210921	0.576795272443203	0.0340380288620871	0.225697692690508
Merged-chr16-36068568-4	chr16	36068081	36069081	+	970.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	2934.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	6.59171463227258	6.35934161490459	6.67498660174483	6.92857395425575	7.06616808978284	6.96876622028449	0.703752185874711	0.00656873004508908	0.0746070010362779
Merged-chr19-32832880-2	chr19	32832380	32833380	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	75303.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	2.8384564417422	2.57822093381488	2.71447295022258	2.69238081162101	2.47300549171381	2.78799172792753	-0.338356516828541	0.663648085754566	0.907297207161427
Merged-chr12-108760744-4	chr12	108760238	108761238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32573.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	6.42622186681708	7.27659905935585	7.00009265566123	6.81132328471212	7.2121481475102	6.87682539240138	0.0490901568037	0.879340080307514	0.972083703102674
Merged-chr5-122371870-3	chr5	122371367	122372367	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	96.0	NM_026883	68948.0	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	3.96939153894292	3.91508962363443	3.86319754400644	3.93683403384247	3.82392377587575	4.03018196481361	0.0213273719509965	0.96628731215976	0.992284576568462
Merged-chr19-5645094-1	chr19	5644594	5645594	+	1000.0	f1_c57bl6.idr	intron (NM_009045, intron 8 of 10)	B1_Mur2|SINE|Alu	7604.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.11413119285149	2.7279176176648	3.68509553704028	3.15952465935557	2.80102676194941	3.47188554920147	-0.251317527374494	0.842670622188562	0.963157971003253
Merged-chr17-83709097-2	chr17	83708597	83709597	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 2 of 16)	B4|SINE|B4	2934.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	7.23259144151887	7.43436444865583	7.02510604854661	7.26269312390146	7.7173916359263	7.11062898416147	0.227490118709098	0.422125420003493	0.79098189652931
Merged-chr17-71161756-4	chr17	71161235	71162235	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-21797.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.61668663901653	3.22984698606213	3.34574849769158	3.48079640881254	3.19515206964302	3.41727781488846	-0.175125364362267	0.781374232859814	0.946174647340264
Merged-chr3-97991632-4	chr3	97991112	97992112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21926.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.18394780394955	5.143184254967	5.57287633365499	5.07109243332184	4.90328253768901	5.11415932698186	-0.572566666815684	0.130027197291796	0.482195010397444
Merged-chr12-3350526-4	chr12	3350006	3351006	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14626.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.2362821085663	6.3975424982652	6.27477195613751	6.33463400829948	6.72698196828541	6.46936152922847	0.362055991957331	0.202038674836899	0.591773948258361
Merged-chr2-102877695-4	chr2	102877189	102878189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23976.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.14404319325491	6.01479454337181	6.23071928049392	5.76980283418119	6.25494259662898	6.30970964835923	0.00838714092492811	0.978783706529434	0.995160277495735
Merged-chr7-39448945-1	chr7	39448445	39449445	+	614.0	f0_balb.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-573.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	3.98291543161355	4.33199251147201	4.18529349507633	4.43297008334174	4.42581115497026	4.51578341799625	0.739427217862329	0.110821908532992	0.444841551070303
Merged-chr8-79028098-4	chr8	79027595	79028595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178267)	promoter-TSS (NM_178267)	-342.0	NM_001294279	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.56793038654181	3.64509395436214	3.30575261343109	3.34498377048714	3.12924878507311	3.43617484104456	-0.842163140686086	0.179001236449559	0.560351002346369
Merged-chr7-98359293-2	chr7	98358793	98359793	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	1995.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	5.18023715983703	5.01674066764581	5.04842719253542	5.14959282473995	5.24316754132889	4.96752509595425	0.104140205745467	0.776915352823054	0.944944931849686
Merged-chr8-84066649-4	chr8	84066175	84067175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009055)	promoter-TSS (NM_009055)	-161.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	8.27456777050644	8.05518864372628	7.0362133905993	7.93869863680145	7.99625258781319	7.85577826140995	0.0417794170122637	0.901465914819703	0.977241855233699
Merged-chr19-9953005-4	chr19	9952501	9953501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27599.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.24527497848733	7.33281050847643	7.21429847800237	7.35941140814851	7.63270891983686	7.14638089195098	0.206079339521321	0.414838352401152	0.786052044028208
Merged-chr4-117190109-4	chr4	117189711	117190711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	7.77935529876269	8.29334021302555	7.55790147772666	7.86912779729346	8.31210635150441	7.64496699916368	0.0818495740364521	0.787679559061283	0.94877064431094
Merged-chr17-55952632-4	chr17	55952117	55953117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015766)	promoter-TSS (NM_015766)	-6.0	NM_015766	50498.0	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	6.48639297687073	6.39816075709828	6.07680732717607	6.16951332950067	6.60186469158926	6.39135870518458	0.105068128525069	0.728254824459491	0.930466448117087
Merged-chr11-34066819-4	chr11	34066316	34067316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	ORR1F|LTR|ERVL-MaLR	19888.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.66979205383103	5.67752032877817	5.78972893340736	5.71600767725332	5.57609070910497	5.67163851518242	-0.104366867536849	0.738040479936873	0.933858424870961
Merged-chr17-48325055-2	chr17	48324555	48325555	+	931.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8893.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	6.65665900044637	5.97140732225315	6.58553555516741	6.58368757582146	6.37775764722268	6.34033501115926	0.00410252948608089	0.989832283617623	0.997611022725407
Merged-chr11-101647177-2	chr11	101646677	101647677	+	788.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-18364.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	3.97595797333748	3.713281283191	4.28773707062178	4.00204522254394	4.31957360980735	4.47379853909551	0.764922511009247	0.149645808715114	0.516117590626348
Merged-chr9-120582770-4	chr9	120582284	120583284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5453.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	6.20769967735779	6.37200643071668	6.42950184373751	6.27378928979154	6.3623583918326	6.0597542750624	-0.144279786452178	0.612899894823721	0.886969289870611
Merged-chr2-124612019-2	chr2	124611519	124612519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1723.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.92185136129242	8.16785358058953	7.87091130682037	8.14944112167748	8.48411280406722	7.76158151752556	0.251983204964482	0.347643549466734	0.735700597497696
Merged-chr5-118560854-4	chr5	118560382	118561382	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 1 of 30)	CpG-11438	163.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.83505672797228	5.68076200124806	6.00756843596134	5.87719765202472	5.36036262118475	5.81643846169484	-0.264099443684515	0.442942119754173	0.803447385622969
Merged-chr11-61469046-4	chr11	61468539	61469539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15047.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	8.5500810020751	8.48637102765621	8.29439642701383	8.42514346203582	8.93863901775304	8.00060252211226	0.10147828648515	0.724018601885818	0.929178878081464
Merged-chr10-80398940-4	chr10	80398457	80399457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	CpG	574.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	8.68903495332893	8.43973408015477	8.11040613482675	8.44290171477626	8.31516677871912	8.15825187472546	-0.180003464514641	0.463747071143904	0.816038286358001
Merged-chr5-64343806-1	chr5	64343306	64344306	+	671.0	f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	MTE2b|LTR|ERVL-MaLR	113449.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.55532391369433	6.79788739045432	6.53223940623956	6.59183020258971	6.76004356358303	6.72486663378722	0.0869101121905667	0.742360409283098	0.935192080236037
Merged-chr16-38087460-2	chr16	38086949	38087949	+	812.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033221, exon 1 of 1)	non-coding (NR_033221, exon 1 of 1)	-1552.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	4.54561149630019	4.85640330653988	4.54751315238949	4.38760122528436	4.45835361956635	4.34900891185297	-0.646232782700882	0.138902223944804	0.497922464673413
Merged-chr12-51706991-3	chr12	51706492	51707492	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-15078.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	2.98647580462161	3.44170251938438	3.20990592527638	2.90967319573445	2.88662947126152	2.98666943250224	-1.38875640147538	0.0484080648722128	0.279049754733476
Merged-chr5-130146061-2	chr5	130145561	130146561	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172509, intron 1 of 3)	intron (NM_172509, intron 1 of 3)	1173.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	3.11932387172048	3.2443063710742	2.88739658258842	3.20846721741378	3.05599329663984	3.20935956188763	0.252133164732243	0.711070800666016	0.924558647751225
Merged-chr7-110097347-4	chr7	110096752	110097752	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24807.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	6.26295242388644	6.20338127698551	5.63072351924112	6.12910965017316	5.93212847771068	5.9896965819168	-0.100876736392315	0.760013411082455	0.940572672765463
Merged-chr17-34305802-4	chr17	34305292	34306292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-75.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	7.45543180612284	7.10997401927989	7.27158780335531	8.06230361500895	8.30011377055973	7.78544619237985	1.13485204407477	8.97184456348495e-06	0.000363805673702951
Merged-chr4-53210875-1	chr4	53210375	53211375	+	796.0	f0_balb.idr	Intergenic	Intergenic	-35321.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	2.85314209974497	2.68608220938161	2.82207196355461	2.73816909490184	2.54912091378837	2.77337744486779	-0.549672108326689	0.461743268815796	0.815107818354545
Merged-chr3-60505810-3	chr3	60505320	60506320	+	744.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	4641.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.04734539039312	3.63840103384775	3.89623609854132	4.20509930560055	4.35867919962257	4.11721795174994	1.06460449554316	0.0394480844555895	0.246648347714209
Merged-chr6-113662914-4	chr6	113662364	113663364	+	821.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	24397.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.5629277434664	7.3617289652405	7.4643220122422	7.47267983587939	7.56605155841664	7.42743453836268	0.0414198062343635	0.85560953739576	0.966244542232428
Merged-chr6-37905675-2	chr6	37905175	37906175	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272076, intron 2 of 18)	intron (NM_001272076, intron 2 of 18)	5188.0	NM_001272076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	2.62523908618035	2.71341627392651	2.85032777674145	2.44350740121593	2.50708115741123	3.03348716496429	-0.233514204759742	0.778235737259126	0.945439632982223
Merged-chr6-88466411-2	chr6	88465911	88466911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019685, intron 1 of 10)	intron (NM_019685, intron 1 of 10)	1002.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	3.59416757714966	3.99592499561015	3.53528750189863	3.56179983653722	3.75566347935455	3.77037937163532	-0.114062922460718	0.843809795743314	0.963645026675097
Merged-chr5-115342004-2	chr5	115341504	115342504	+	709.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029645)	promoter-TSS (NM_029645)	757.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	6.2287170837281	6.6156795580169	6.48967633300469	6.21004345838822	6.59983079942834	6.17570249359857	-0.1609063436417	0.597629835734753	0.880433364120803
Merged-chr1-13386170-2	chr1	13385670	13386670	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12087.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.26894243604548	2.59274229299433	2.46741543773266	2.53356078524477	2.61364773998422	2.78972883633899	1.14067686897537	0.176354782237093	1
Merged-chr11-114908239-4	chr11	114907749	114908749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18208.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	8.14420844037042	7.45968853259599	7.60199727890349	7.76670621423682	7.87908418158674	7.26146521341006	-0.151810278427128	0.615174090896195	0.887837890784518
Merged-chr11-70874319-4	chr11	70873811	70874811	+	934.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	29550.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	6.15645204666095	5.83563878373905	5.47149609594699	5.89304292306441	5.83506396832942	5.40353592506745	-0.223166916829976	0.543645572247137	0.857551302506722
Merged-chr5-66075244-4	chr5	66074760	66075760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	22919.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.08387010153388	6.76848823132526	6.80521972682984	7.08892506612734	7.15319008307507	7.2236674870735	0.390060681545787	0.12179442251902	0.466849055144701
Merged-chr4-105162339-2	chr4	105161839	105162839	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	4992.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.98075474776256	4.0241381519926	4.15530871129294	4.14012790452091	4.25865872131225	4.22314284606261	0.455227166441604	0.335099509250711	0.725339338581532
Merged-chr12-84846813-4	chr12	84846313	84847313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28989.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	6.10316815528383	6.04306969549863	6.00819742977062	5.6511157425208	5.48968861389036	5.55728851060115	-0.880796431302086	0.00380520001161599	0.0500748193209779
Merged-chr15-78877326-5	chr15	78876838	78877838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145929, exon 1 of 17)	5' UTR (NM_145929, exon 1 of 17)	148.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	8.96006173211323	8.89198893662321	8.72533175607863	8.88924916862173	9.10961959419827	8.69841880057198	0.0689039613173031	0.754165243834048	0.938749406988248
Merged-chr9-25503840-2	chr9	25503340	25504340	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22243.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.74499525126713	4.64702875085613	4.61235510241528	4.77381222943015	4.46761014739947	4.50920768889166	-0.196435167696988	0.640134533512	0.89832382008781
Merged-chr13-6647357-4	chr13	6646848	6647848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	1423.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	6.14584593102887	6.39841190486332	6.24216084126019	5.91641893878812	6.21238162071429	5.70201000740783	-0.492308598389768	0.120021068383187	0.46323568795654
Merged-chr4-148041593-2	chr4	148041093	148042093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001161798, exon 2 of 12)	exon (NM_001161798, exon 2 of 12)	404.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	5.86729747770719	6.16588072048254	6.67385068887294	6.57004826180245	6.45771537555027	6.71759042015124	0.510639831149699	0.120720839120174	0.464746993078566
Merged-chr4-132514931-4	chr4	132514437	132515437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4481.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	6.44124597075042	6.65389336418819	6.32775790756658	7.02922479199034	7.38100154462543	6.58542594609892	0.877551342928032	0.00487969932810615	0.0602239723662202
Merged-chr2-24869696-3	chr2	24869205	24870205	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012518, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	49904.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	2.86961910124733	2.59869220915446	2.72618500848637	2.45463145581635	2.69927933596131	2.40521816579811	-1.1477486440348	0.179578264656201	1
Merged-chr10-93261309-4	chr10	93260816	93261816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49843.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.95266620580633	5.49315178527156	5.71383543258832	5.46936815658668	5.3387788643275	5.50227469143497	-0.56696923529124	0.0969781553045536	0.415239970492528
Merged-chr1-190927542-2	chr1	190927042	190928042	+	793.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-948.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	5.52840231413294	5.47626680883786	5.50369068031326	5.26661149854769	5.25829856898945	5.19424842428588	-0.510503055938232	0.12740144466252	0.47713250153821
Merged-chr17-22424863-3	chr17	22424359	22425359	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331197, intron 1 of 5)	RLTR9E|LTR|ERVK	657.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	3.74201957808082	3.99360428361679	3.71755937469424	3.65671371792352	3.61372454539176	3.62566834954894	-0.661084765226127	0.225865779502786	0.620790596836024
Merged-chr3-79153133-4	chr3	79152654	79153654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7279.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.0328062611663	7.19670573441616	6.71173128756404	7.02355583893903	7.182533169575	6.51620253653962	-0.0815982245106907	0.787791518073292	0.94877064431094
Merged-chr5-31095515-4	chr5	31095007	31096007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347323, intron 1 of 8)	CpG	-1980.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	4.20651243588443	4.10320724149614	3.98327053613394	4.17612754358908	3.92841017684665	4.14993582052217	-0.0663257040379496	0.892247649074605	0.975035687905648
Merged-chr10-50702538-4	chr10	50702023	50703023	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 16 of 41)	MTD|LTR|ERVL-MaLR	109854.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.32097232734765	4.33046733310047	4.08424018990963	4.43052976182462	4.30525651025	4.38978414345688	0.303374862845006	0.506432386618741	0.83842879061576
Merged-chr19-32759394-2	chr19	32758894	32759894	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1817.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.66734886163611	6.98497787038232	6.46606430626846	7.11546788477938	7.48667612232293	6.81044442901668	0.678924834716472	0.0272244174735191	0.196503238127739
Merged-chr19-40818910-4	chr19	40818405	40819405	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12374.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	3.41432231908301	3.55445329829403	3.48212070024618	3.31940833686533	3.53229199478881	3.60528776888205	0.0148101120991317	0.979806287335729	0.995332945386782
Merged-chr2-146948679-3	chr2	146948191	146949191	+	877.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033298, intron 9 of 13)	intron (NM_001033298, intron 9 of 13)	-64308.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	3.23619831047959	3.31539765192926	3.42669100708719	2.75686421800914	2.76909355823147	2.99585061632678	-2.44313539463071	0.00107238240109485	0.0190231706673013
Merged-chr7-38084354-2	chr7	38083848	38084848	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	23142.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	4.05598322066023	4.20208732983923	4.28435076492697	4.31059812646851	4.27170195631459	4.39433396383798	0.390251279241254	0.394664046569576	0.772514857254462
Merged-chr11-97241459-4	chr11	97240940	97241940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 8 of 22)	intron (NM_008942, intron 8 of 22)	39136.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	6.66331437770207	6.87846951052468	6.33402621959096	6.65530194896026	7.00668932226518	6.94867294198801	0.349021006412952	0.229174955679864	0.624625428681258
Merged-chr12-111843670-4	chr12	111843153	111844153	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011625, exon 7 of 17)	exon (NM_011625, exon 7 of 17)	29483.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	5.90267442533878	5.9504584620504	6.28741011214517	6.1332243505031	6.3556194171704	6.34704122322664	0.401138634701167	0.179304631149846	0.560826955709388
Merged-chr5-43864602-2	chr5	43864102	43865102	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.25865028378298	4.27411235896498	4.50466996899982	4.06339169721492	4.15103438757293	4.41107581343213	-0.364121901342658	0.438674708300368	0.800706259033252
Merged-chr11-114724051-2	chr11	114723551	114724551	+	937.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3361.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	3.65496379728625	3.39805552352294	3.32665449239834	3.55354713883493	3.25341644180074	3.39960551767196	-0.25118292448664	0.682754768330887	0.915212496624716
Merged-chr11-121260557-3	chr11	121260050	121261050	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080932, intron 1 of 8)	intron (NM_001080932, intron 1 of 8)	563.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	5.5056440905844	5.18925236605712	5.46353484504873	5.57329798404985	5.02949238756538	5.31668170358382	-0.136842112011538	0.716407507581882	0.926569584146506
Merged-chr10-39455985-2	chr10	39455485	39456485	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86186.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.30631964788163	4.09954455050002	4.07207262202907	4.59539820324373	4.31220724509112	3.92769389853582	0.394861363137554	0.441005319491615	0.802167900847268
Merged-chr4-115850779-2	chr4	115850279	115851279	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	11581.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	3.95877853523421	3.97762481348763	3.96981788587588	3.78542329980146	3.44793407773359	3.68355248458038	-1.0831369626022	0.046962038466073	0.274334266827086
Merged-chr3-116187872-2	chr3	116187372	116188372	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-58184.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.58064198616724	3.63317481766227	3.59693062590468	3.41860104571138	3.34076540287146	3.81496798672557	-0.260038771103235	0.660643281133221	0.906047471387204
Merged-chr7-125583393-3	chr7	125582874	125583874	+	752.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-20055.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.79066600884115	3.84009077167229	4.01931771019234	3.79790609182828	3.84976650469206	3.94731384489007	-0.0534594329084602	0.917139480313526	0.9815299454321
Merged-chr5-148503606-3	chr5	148503055	148504055	+	782.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48118.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.46630547014445	4.20028512064662	4.38273293325843	3.74043669196277	3.8194690246515	3.94856140250704	-1.53361642534622	0.00229940718363534	0.0343993299057766
Merged-chr16-36672817-2	chr16	36672317	36673317	+	851.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	-6740.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.89920795956028	5.9779370674188	5.71573533790737	5.77189880751831	6.05806326208147	5.63798011839216	-0.047484047575097	0.883308288259569	0.973347392063704
Merged-chr3-106554737-2	chr3	106554237	106555237	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-6935.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.11300027841124	5.85133047799301	6.26574268687067	6.17086053407066	6.23298546216767	6.30630479392008	0.267093937467675	0.366775802348216	0.751896619413869
Merged-chr13-49194900-3	chr13	49194492	49195492	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013610, exon 3 of 4)	exon (NM_013610, exon 3 of 4)	7445.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	5.54232693101245	5.69545424173647	5.84679435523197	5.70800421033979	5.40218187699903	6.01795652175089	0.0458191778701687	0.89609039746082	0.975747732221155
Merged-chr11-69126467-5	chr11	69126012	69127012	+	883.2000119999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_011786, exon 1 of 15)	exon (NM_011786, exon 1 of 15)	135.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	4.27250265967608	3.81114175199279	3.73826088028065	3.95492505362424	3.65823780171416	3.96665640696523	-0.327725335437969	0.558517288529013	0.864722646301276
Merged-chr7-127208979-4	chr7	127208486	127209486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144522)	promoter-TSS (NM_144522)	87.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	5.31878124920976	5.43479815351404	5.094854239521	5.50149198229267	5.62783261489717	5.70872391450038	0.595635737133532	0.0831836819862531	0.381520659834205
Merged-chr1-92975336-3	chr1	92974833	92975833	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-14.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	5.25752011474997	4.88363619094584	5.34541866178961	5.49367532837814	5.33308991416763	5.40850951159081	0.486708223945406	0.183921505628261	0.567396873975387
Merged-chr15-94683882-4	chr15	94683384	94684384	+	937.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	54699.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	4.21842242659126	4.2063955690353	4.24574145792453	4.49032302442621	4.43582509460554	4.8279385157639	0.934586838693114	0.0389140841715371	0.244633054982265
Merged-chr4-45520601-4	chr4	45520103	45521103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	10225.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.17592843318092	6.52202682134123	6.43662610100018	6.12636581428938	5.96105007668194	5.85476187536801	-0.667411238699763	0.0251180749832352	0.18758075598681
Merged-chr12-99979718-4	chr12	99979203	99980203	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Lx7|LINE|L1	15204.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.86932580804037	6.49909301974141	6.18067710204415	5.85589612040687	6.25086839943458	6.05929562575137	-0.800035027459644	0.014633437865705	0.130352114113005
Merged-chr9-88481895-4	chr9	88481367	88482367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284328, intron 1 of 11)	CpG	530.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	7.6029311435792	7.54100660421981	7.95237634944912	7.41065434520973	7.40504052623758	8.10282678226732	-0.0422457124376227	0.886086460353653	0.973683443207102
Merged-chr3-65442459-3	chr3	65441939	65442939	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49886.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.93375858020573	3.83609564733488	3.70008282657114	3.72731171181207	3.9520880460158	3.48054620361359	-0.270871890675694	0.636838120775647	0.89723915288953
Merged-chr8-11767632-4	chr8	11767129	11768129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 1 of 19)	RMER15|LTR|ERVL	9299.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	4.21717174706346	4.58640328651541	4.58000230405927	4.53678392613612	4.69490960955802	4.83345534392942	0.535358497624222	0.223999202894909	0.61876786649225
Merged-chr1-191334672-4	chr1	191334164	191335164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	8699.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	6.42536681025598	6.00142178772805	6.15566060846183	5.98723401994629	6.02948251805358	5.91912043065344	-0.385345959356747	0.204238196146756	0.594703661288468
Merged-chr7-126565827-3	chr7	126565327	126566327	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 2 of 20)	intron (NM_146200, intron 2 of 20)	539.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	5.90368093430156	5.90866015902705	5.90704062585816	5.89772598712817	5.80328660115468	5.84647237792012	-0.103668523112412	0.725738855511729	0.929707128236285
Merged-chr14-7958794-4	chr14	7958297	7959297	+	942.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35385.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	2.52045221548267	2.66806268887813	2.45104867301356	2.6734849641371	2.53194412876321	2.78080878279895	0.608262193595769	0.441276463476432	1
Merged-chr1-86441583-4	chr1	86441093	86442093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15264.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	7.41787260785188	7.25030324660549	7.12480093478723	7.50443724958846	7.41714393465449	7.38417882134726	0.238082088060145	0.312437382467229	0.707159092574958
Merged-chr12-85593200-4	chr12	85592703	85593703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-5902.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.44143235391044	5.2166970316554	5.03157087261513	5.29549197299497	5.4241615242362	5.17002943200053	0.116078515850791	0.750614451224102	0.937588367655538
Merged-chr5-30960330-4	chr5	30959841	30960841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-14.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	8.28080019056893	8.4713402559408	8.22955790577827	8.35608197244936	8.67791178887468	8.39008302361336	0.213251260389439	0.339621969204347	0.729313720985741
Merged-chr4-105269223-2	chr4	105268723	105269723	+	820.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111876.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.18841045909176	3.60868411880388	3.80783374737237	4.25776408153595	4.03443859777305	4.08408905134339	0.676335394917972	0.217587398949456	0.611614495364718
Merged-chr9-80068945-4	chr9	80068425	80069425	+	841.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	2022.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	3.91211056318269	3.58425235740998	3.56268086659286	3.80874662361542	3.81504598631315	3.74527919714055	0.291234503399322	0.5985727794604	0.880808927175713
Merged-chr2-126677819-2	chr2	126677319	126678319	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1482.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	3.76180000948721	3.69287110003274	4.12423811037918	3.72976655953075	3.58717473879793	4.10602688134297	-0.152566168851517	0.788971435994669	0.949092571737679
Merged-chr7-125557559-1	chr7	125557059	125558059	+	596.0	f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	5277.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	2.84466416237904	2.73643103268824	2.86955533534886	3.13388905339844	3.41455692918873	3.13085846145106	2.04673904461358	0.0043045501708843	0.0549682336738706
Merged-chr5-92503550-4	chr5	92503027	92504027	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	2130.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.16099223339743	7.04394120424511	7.15830399870862	6.96293522976354	6.79324514151218	7.06758274628555	-0.277779866695696	0.258496029458754	0.656051662718961
Merged-chr11-95844190-4	chr11	95843705	95844705	+	881.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023121, intron 2 of 3)	B3|SINE|B2	960.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.59844980564246	7.71380430013916	7.75349699387115	8.16830557339925	8.27348574466158	7.42013188141106	0.467679497569326	0.10206617466476	0.426069687497354
Merged-chr11-83385674-4	chr11	83385163	83386163	+	856.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 17 of 20)	intron (NM_027915, intron 17 of 20)	-23474.0	NM_001361566	276952.0	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	5.07789573206138	4.92971387890552	4.93565759398845	4.72347862514458	4.77548270915563	4.64965007773863	-0.588799988117332	0.130181746478571	0.482437417710952
Merged-chr16-36936044-4	chr16	36935518	36936518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1035.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	8.24249095291821	8.22798485885424	8.101424044662	8.53966636612158	8.6580321955251	8.24600743295942	0.424862602544122	0.0570604466635808	0.308042525066748
Merged-chr12-4436333-2	chr12	4435833	4436833	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	L1M2|LINE|L1	40849.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	3.71665957966136	3.9512673360835	3.72838246327	4.00653350653743	4.10250392652896	3.80019877210898	0.539931391765392	0.307215752615968	0.703285276522147
Merged-chr3-97158116-4	chr3	97157670	97158670	+	864.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-607.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	5.49144228224343	5.69260779954384	5.53105517542454	5.54862868781995	5.59616214453915	5.64906980916319	0.0338437508110439	0.91616231148214	0.981243905880233
Merged-chr6-121215207-4	chr6	121214704	121215704	+	934.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 1 of 4)	intron (NM_017379, intron 1 of 4)	4470.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	2.09431170655212	2.16355022015228	2.30036003477864	2.13706592291304	2.06303048455374	2.04420429950196	-0.768366018043844	0.396075341219933	1
Merged-chr11-75628373-2	chr11	75627873	75628873	+	600.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008850, exon 12 of 12)	3' UTR (NM_008850, exon 12 of 12)	-2647.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	2.84597431474418	2.96825259554979	3.2880925437312	2.92302439116842	2.8505756399426	3.30646410976264	-0.0250266454383022	0.972452818555301	0.993868590220018
Merged-chr13-116958192-2	chr13	116957692	116958692	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67324.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.03357119258344	4.11468942019745	4.13977991027045	4.54544712950233	4.20932951859176	4.00841391785852	0.506797506825599	0.303811862956268	0.700294220341559
Merged-chr7-29238261-4	chr7	29237777	29238777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	-46.0	NM_001110201	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	7.12463364488347	7.01879908856361	7.01557954763339	7.75009865848633	7.91858059780493	7.51270277265824	1.01612717144622	2.66692983992672e-05	0.000932786457001356
Merged-chr10-59259323-2	chr10	59258823	59259823	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37401.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.28317943670239	5.44532938184609	5.44635512397212	6.21659080984158	6.21492741433911	5.71732686162234	1.25192039059812	0.000169887780953742	0.00438810753905051
Merged-chr14-73241495-1	chr14	73240995	73241995	+	564.5	f0_balb.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	3604.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	4.59147365380092	4.24201074396295	4.3602563244152	4.40584617468158	4.47761955624501	4.95544196315182	0.535345880534038	0.254097080278588	0.651179145391095
Merged-chr13-64370384-4	chr13	64369911	64370911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009984, exon 1 of 8)	5' UTR (NM_009984, exon 1 of 8)	109.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	7.80118159893214	7.83294860444247	7.75336867831697	8.18890427957089	8.33222622186124	7.98968879356631	0.54854183991628	0.0131448718885883	0.121650372606568
Merged-chr5-90773035-2	chr5	90772535	90773535	+	719.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019932, exon 2 of 3)	exon (NM_019932, exon 2 of 3)	600.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	6.16857007958734	5.84323407383238	5.63790769351726	5.29904456044956	5.22000323522284	5.30386468764653	-1.2019009823928	0.000472477421980673	0.0100521353434334
Merged-chr4-105204385-4	chr4	105203898	105204898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 2 of 5)	MIRc|SINE|MIR	47051.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.99494975133279	4.46425399830461	4.69407575586482	5.56933338550773	5.08882792391145	5.00169306509055	1.08397352370183	0.0126357221144312	0.118440144834696
Merged-chr8-120105496-2	chr8	120104996	120105996	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4024.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	6.85510890557977	6.9803332807825	7.0455503096593	7.19241344451582	7.24675742250796	6.81747095530899	0.2284597046366	0.379572381029071	0.761960372847995
Merged-chr7-121078609-2	chr7	121078109	121079109	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4079.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	4.47910271672869	4.58385459448892	4.7308390433474	4.49850462770957	4.01259176623059	4.75976224896919	-0.367066881803093	0.453233276048881	0.809701014116181
Merged-chr3-31403215-3	chr3	31402690	31403690	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92871.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.57980947850409	3.55874086823185	3.48701694389657	3.75943053601554	3.36695258966237	3.19396230393197	-0.280072153443546	0.657538596646543	0.904801990272132
Merged-chr12-32339965-4	chr12	32339477	32340477	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-38812.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	4.26113743480462	4.01873352396486	4.08658196878391	4.4375982557022	4.40142629155983	4.70540399018287	1.01992461908642	0.0290621380415176	0.204718394262959
Merged-chr11-113748892-2	chr11	113748392	113749392	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	2268.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.31067147603539	3.32072066973048	3.81349914950565	3.55086024820838	3.35890181599102	3.78921203060777	0.274314910730618	0.662593733475089	0.906804932599005
Merged-chr16-23232948-2	chr16	23232448	23233448	+	776.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	6927.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.24209397028353	5.80676927641372	5.79582426113184	6.13519909704987	6.09857985765288	6.34349840256636	0.369917156112989	0.243342605755618	0.640502592040103
Merged-chr11-94610975-2	chr11	94610475	94611475	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-9189.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	5.71538832293439	5.65446876923653	5.90045901236431	5.23376411684032	5.56061794592049	5.44316170739312	-0.614886540114072	0.0674996892321027	0.339797576479206
Merged-chr4-136897362-3	chr4	136896888	136897888	+	931.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007572, intron 2 of 2)	MIRc|SINE|MIR	1456.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	7.36776957637636	7.79545022491582	7.66436126912909	7.85814028989726	7.88017011187817	7.35073901382412	0.151574992249878	0.573200620666841	0.869962295500663
Merged-chr7-25238207-10	chr7	25237700	25238700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001031667)	promoter-TSS (NM_001031667)	-349.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	7.26312711000008	7.14995920254373	7.20799361831995	7.35354427247341	7.524631473732	7.32369795922746	0.299226973868608	0.198180434713146	0.586445873078056
Merged-chr1-144244372-3	chr1	144243918	144244918	+	977.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015811)	TTS (NM_015811)	4686.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.36947508237842	5.24132453039377	4.87626132733502	4.68212316014435	4.67167799102839	4.74220050658016	-1.08399016390974	0.00641649095199714	0.0733887806369454
Merged-chr14-31410397-4	chr14	31409886	31410886	+	913.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	7291.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.43395034981664	5.0838728875795	5.19520716110581	4.95268308424103	4.82802225509577	5.25880824378896	-0.492170656828958	0.202750828287761	0.592633256759336
Merged-chr9-123479918-2	chr9	123479418	123480418	+	782.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_013860, exon 1 of 8)	exon (NM_013860, exon 1 of 8)	1217.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	4.05866963454224	4.11981404589662	4.26313208228839	4.1655875914691	4.04097644499916	4.67768009498274	0.453286847344617	0.370614442298966	0.754925101617721
Merged-chr11-97701085-2	chr11	97700585	97701585	+	992.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009545)	promoter-TSS (NM_009545)	-588.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	3.51376164223925	3.32121942988455	3.52008102301643	3.41855584442187	3.17569275517262	3.42980276072286	-0.433111605943667	0.476956221365519	0.823048451178624
Merged-chr14-54227052-4	chr14	54226569	54227569	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26860.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	3.80878374764822	3.53392818741768	3.68208052414987	4.00786974541296	3.51207341965406	3.9534446438972	0.51207227534419	0.373960274031538	0.757700501171652
Merged-chr11-118196876-2	chr11	118196376	118197376	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	15866.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.29282997363634	4.26938498715313	3.87876760377696	4.00043159488253	3.82182444305351	3.84154041950282	-0.828238398668214	0.109201080625527	0.441580576210761
Merged-chr1-72226377-3	chr1	72225913	72226913	+	932.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U2|snRNA|snRNA	-14099.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	3.97221625533405	3.94623508730639	4.33111003061687	4.07335389525226	4.04960494828161	4.09304861377533	-0.0368506531854321	0.940782502157373	0.986888338850358
Merged-chr6-17281202-4	chr6	17280701	17281701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277756)	promoter-TSS (NM_001277756)	16.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	3.77505427884613	3.48576962850693	3.81824674329776	3.52487902583221	3.3362905703203	3.63923731957589	-0.704349569431087	0.229002004002241	0.624460862195007
Merged-chr10-99167878-2	chr10	99167378	99168378	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B4|SINE|B4	59743.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.60798832474254	4.67666749346941	4.44862662803375	4.38296476529448	4.65179178918443	4.64197313670583	-0.0536282622213946	0.900361666611454	0.976731943826834
Merged-chr18-84860878-2	chr18	84860378	84861378	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	9540.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	2.78584585384364	2.67832077429115	2.99662558866	2.70194298849476	2.79571211149024	2.89607827081992	-0.115817032971912	0.873914687674426	0.970492962848917
Merged-chr13-46975152-3	chr13	46974644	46975644	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	39706.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	2.48829813711185	2.57644731483437	2.72464327428564	2.93479475094233	2.90653662108614	2.98035500946806	1.91750780746188	0.0129080716500265	0.120374640862887
Merged-chr13-97561170-4	chr13	97560669	97561669	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 1 of 2)	intron (NR_046157, intron 1 of 2)	1169.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.8934622575837	5.84112894730036	5.66347197690986	5.61958959230616	5.73713519215213	5.67095297260814	-0.237518201347882	0.44552858496244	0.805194667777499
Merged-chr6-125352094-4	chr6	125351595	125352595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	2372.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	7.12241831591837	6.85394189676525	6.96226127970775	7.38578742055356	7.82842585676803	7.54445404177303	0.920672462878659	0.000344899580911754	0.00781121511390997
Merged-chr6-127240297-4	chr6	127239782	127240782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67685.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	5.73010118688206	5.23514746295919	5.33822931202302	5.87535713182226	5.77431804822882	5.46716874740443	0.493327867851488	0.170977016719305	0.548952600987031
Merged-chr10-40142322-4	chr10	40141821	40142821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-67.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	7.31718924407319	7.32179291416216	7.07290691513629	7.06051017320451	6.98684195996894	6.82986219420459	-0.424882674724205	0.0851021645713421	0.386252608791229
Merged-chr7-73539872-2	chr7	73539372	73540372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037569)	TTS (NR_037569)	1874.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.45246664154404	7.58992874359293	6.78400697051066	7.48898501744495	7.67498423368677	7.14496384651236	0.189977973495131	0.540984501898948	0.856635215906203
Merged-chr8-110217863-4	chr8	110217349	110218349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146215)	promoter-TSS (NM_146215)	-111.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	5.86531407092768	5.94450409250167	5.86163673407795	6.29408268827714	6.11128379273365	5.84653255639808	0.367268096485024	0.229031449984766	0.624505437231108
Merged-chr11-35827937-4	chr11	35827397	35828397	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025936, intron 3 of 14)	intron (NM_025936, intron 3 of 14)	6631.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	4.15677993215928	3.9784367202634	4.30077121027806	4.53620737519022	4.24104126979929	4.85881431335372	1.08114773883608	0.0274720701018202	0.197588037776148
Merged-chr15-5237611-2	chr15	5237111	5238111	+	775.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	6576.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.08304700841776	3.15038889638191	2.95035748118137	3.44095789084276	3.22392356697913	3.32442614784948	1.12248779674251	0.0884564378500801	0.39477888978682
Merged-chr10-34283656-2	chr10	34283156	34284156	+	671.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009433, exon 1 of 1)	3' UTR (NM_009433, exon 1 of 1)	1466.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	5.681899515748	5.94693835996829	5.94434791187665	6.09231194418695	6.0275104128613	5.75440786740528	0.200629360482388	0.521006854746208	0.846899497347525
Merged-chr11-23020433-4	chr11	23019924	23020924	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028672, exon 3 of 4)	exon (NM_028672, exon 3 of 4)	7037.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	4.59526622348927	4.51973350717194	4.43399547588539	4.36922164274592	4.69026097632912	4.66702504339152	0.154652225077263	0.719879527033169	0.927960661644538
Merged-chr9-54950682-4	chr9	54950150	54951150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011966)	promoter-TSS (NM_011966)	-209.0	NM_011966	26441.0	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	6.87891772759984	7.07054528627036	7.23803559244108	6.81677647135125	7.06497586681102	6.94696324789883	-0.173768600018392	0.499952124188561	0.834866436005229
Merged-chr14-56886450-4	chr14	56885962	56886962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029498)	promoter-TSS (NM_029498)	-141.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	6.84748241320444	6.80811431422545	6.66141533586746	7.17710478209799	6.75405208404363	6.89196855083758	0.266027867901874	0.319331263471434	0.713371644772242
Merged-chr16-30060001-2	chr16	30059501	30060501	+	911.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5356.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	3.38935030577546	3.43985121070103	3.31323635169683	3.66400762373592	3.47578952190527	3.65944032381044	0.789699275984249	0.176331262342317	0.556535671844783
Merged-chr15-78246844-4	chr15	78246327	78247327	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	2016.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.33336522395622	6.41072195949752	6.64229069820057	6.32022638129822	6.11515772651765	6.39815443960387	-0.306259114826478	0.281680060410362	0.679779269988412
Merged-chr4-7456415-2	chr4	7455915	7456915	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104273.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	4.04256155355565	4.11870125580733	4.07329683112805	4.15174093049545	4.2238792807757	4.27907780551465	0.390567900618722	0.403773000622709	0.779028076050139
Merged-chr13-8885138-2	chr13	8884638	8885638	+	851.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145360)	promoter-TSS (NM_145360)	-468.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	5.93346945177862	6.35984941923176	6.15229767514927	6.22955593737721	6.58474255812481	6.35516485685412	0.400377622113072	0.187585122415317	0.572749995080498
Merged-chr1-34849861-8	chr1	34849392	34850392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175421)	promoter-TSS (NM_175421)	-67.0	NM_145516	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	8.37256854393278	8.44846145879993	8.07219099913988	8.45219969480574	8.47573945462326	8.32269030833023	0.148936753514515	0.500683417464984	0.835205104156421
Merged-chr4-130801449-4	chr4	130800951	130801951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8914.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.90790353572697	8.61251990768649	8.46140727794617	8.7728078118947	8.92809105788728	8.36739865705454	0.0534041676798233	0.832383926329141	0.960616839788396
Merged-chr1-105788110-2	chr1	105787610	105788610	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	7387.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	5.71763098787493	5.49470485304878	5.92007266315566	5.73044805225599	5.76756770924284	5.65954835231407	0.0227593240760878	0.94412157176327	0.987572978783338
Merged-chr3-107087575-4	chr3	107087069	107088069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-13998.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.24178051273887	4.23851206526526	4.23686969942495	4.36434690991607	4.15375868722055	4.25927673811524	0.0527679710949912	0.908087410401688	0.979108668058273
Merged-chr7-73533661-4	chr7	73533189	73534189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8057.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.83742005819101	7.96319511581574	7.72362691838436	7.71798133797217	7.74744304180646	7.69953535635249	-0.182327393095037	0.40429484484767	0.77945770433258
Merged-chr10-45000988-4	chr10	45000397	45001397	+	923.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66317.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	5.56982955363639	5.63540032577361	5.8702736609105	5.80520712485132	5.80913011035485	5.53653821264107	0.0794880981279203	0.806348688639011	0.954125791654011
Merged-chr14-121907455-4	chr14	121906968	121907968	+	942.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 3 of 8)	intron (NM_026861, intron 3 of 8)	8306.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.0601303112414	6.29527568897257	6.28645216772535	5.78679469551316	6.0486699548918	6.2298964990885	-0.318912641787529	0.295031899490987	0.691989353164001
Merged-chr17-63894899-2	chr17	63894399	63895399	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	BGLII|LTR|ERVK	16833.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.59061090472988	5.30848625707137	5.48540059269103	5.9220647249135	5.49717288582633	5.8632672716238	0.559199782492457	0.10410045093378	0.430302549493192
Merged-chr4-128655098-3	chr4	128654596	128655596	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	CpG	394.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.48100327861819	7.55756258492908	7.43333989902029	7.43090024699577	7.34429599137353	7.0584615515847	-0.292614374608416	0.22384714037105	0.618583157039309
Merged-chr5-34232028-4	chr5	34231530	34232530	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-44320.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	3.80567018984861	3.99422118615744	3.75679938912881	3.47359007471072	3.25557773746562	3.56075583086503	-1.56298233787985	0.00766442953339692	0.0834740644783889
Merged-chr5-105684151-4	chr5	105683641	105684641	+	955.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-15828.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.79560607196246	5.70969215441254	5.04493090703127	5.00278344527691	4.72903918707548	5.07450228993574	-1.2832054839354	0.00160403330443199	0.0260782343093352
Merged-chr15-67996668-3	chr15	67996161	67997161	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262195.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.37442043036724	3.13194795020211	3.46383732123192	2.90876847796965	2.9600077598608	2.97226607819356	-1.71866303581601	0.0130876151580624	0.121389369274906
Merged-chr3-8667978-4	chr3	8667455	8668455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-917.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	7.38835713916043	7.82884768840917	7.58705508297712	7.14330939759725	7.29847102922128	7.2565967834576	-0.561060318893746	0.0240355724138336	0.182294404284957
Merged-chr16-91717160-4	chr16	91716644	91717644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 2 of 11)	MTE2a|LTR|ERVL-MaLR	11658.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	5.41825485157237	4.92155353831724	4.72322623674593	4.97605881035355	4.66193362426355	4.94886722479789	-0.435068595698316	0.314338056440914	0.708700303644741
Merged-chr6-82753193-4	chr6	82752641	82753641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21313.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.90080800370078	6.81605322063018	6.20076078563281	6.8790175863943	6.84969025680489	6.53313621784954	0.125905290354039	0.686129860602946	0.916596830431285
Merged-chr5-25705796-4	chr5	25705283	25706283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020570)	promoter-TSS (NM_020570)	14.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	5.03345036834043	5.37627270582678	4.9988613338784	5.19131326469007	5.10550460790029	5.13541915963097	-0.029406888881771	0.937133166177963	0.986041955253459
Merged-chr3-154332102-4	chr3	154331583	154332583	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040387, intron 1 of 2)	intron (NR_040387, intron 1 of 2)	1262.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	2.91319644030211	2.77664873073759	2.79604562815803	2.91719828023724	2.77882915861103	2.93074373287406	0.211383870662101	0.764566293438719	0.941979298344481
Merged-chr9-107296157-4	chr9	107295650	107296650	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-509.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	4.70295306033599	4.37009596652188	4.21018969594561	5.13161579039582	4.82600841615201	4.60706864399871	1.02621639815239	0.0287545732134875	0.203263149090805
Merged-chr7-19503683-4	chr7	19503180	19504180	+	942.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4651.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	3.09028730271789	3.14828651753483	3.08062466514864	3.17080217589214	3.03263491104955	3.21071499047716	0.11939982088361	0.853096212567205	0.965597129346461
Merged-chr9-45084691-3	chr9	45084199	45085199	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	5516.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	4.25610373761176	4.42213945182691	4.71377133127899	3.70461986495866	3.39468711442889	3.86244016911576	-2.58227581810709	7.65760407511139e-06	0.000318109795248062
Merged-chr4-141213963-4	chr4	141213474	141214474	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081174)	promoter-TSS (NM_001081174)	18.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	3.75581915526298	3.84747256558727	3.68981704110509	4.14465641520426	4.2355272652468	4.3013705615753	1.36583803132455	0.00700455925572302	0.0781385395562677
Merged-chr9-110994867-4	chr9	110994379	110995379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152179, intron 2 of 6)	RMER17C2|LTR|ERVK	-5166.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	4.98816387524885	4.99298765507967	5.00235377175997	5.29932164293516	5.07766541543424	5.13688436874711	0.376335593949528	0.300443892713464	0.697298854445564
Merged-chr17-13869297-4	chr17	13868867	13869867	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	MTA_Mm|LTR|ERVL-MaLR	-79006.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	5.90442610139354	6.00619281102592	6.2838165185487	5.50436743865826	5.59851164124166	5.6879827283633	-0.841381418379818	0.00808682500219592	0.0867347943777672
Merged-chr2-5715234-2	chr2	5714734	5715734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-472.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	6.1403272413599	5.85808232250139	5.93572916628671	5.71954721338631	5.78814461294031	5.60517829524189	-0.484343870487814	0.119732448669812	0.462471223255784
Merged-chr5-137863591-2	chr5	137863089	137864089	+	553.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	5.71309689423107	5.50689724072613	5.4755133712592	5.75656329706382	5.50167746643785	5.24615539846336	-0.0892463002126968	0.798393857357039	0.951930937621884
Merged-chr16-30374493-4	chr16	30373998	30374998	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	14032.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	2.60943286373811	2.38169891755043	2.26637473970232	2.52012462626973	2.45451169637136	2.60853933159787	0.575382151890981	0.49911687490067	1
Merged-chr13-112395157-4	chr13	112394650	112395650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68920.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.49901511679821	5.94949426003355	6.10324768011039	6.1720609316564	6.31281065944524	6.51208636145108	0.206347652285479	0.513436530896396	0.842597552908258
Merged-chr16-44772739-4	chr16	44772225	44773225	+	801.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	6989.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.18965708305811	4.1958440296276	4.041383808645	4.01174705256522	3.96976764528471	3.79722238234391	-0.627387051299764	0.207261022280591	0.598028441690595
Merged-chr13-49326876-2	chr13	49326376	49327376	+	645.383301	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14673.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	3.50773926019174	3.2507237637407	3.27966255216549	3.16810729093408	2.97385135670737	3.17700790252613	-1.06266845463696	0.103134726802671	0.428268008174301
Merged-chr1-74367272-2	chr1	74366772	74367772	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 7 of 9)	PB1D7|SINE|Alu	5164.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	4.62936401463476	4.84496882730767	5.08978805646845	4.99803944882766	4.86072777762366	5.21509621381454	0.361793927551827	0.37126086972901	0.755436533897021
Merged-chr6-142758727-2	chr6	142758227	142759227	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	2041.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	3.37546323487928	3.23503473074569	3.48451031443076	3.30501547808142	3.31405109885949	3.39424318424868	-0.107900261879946	0.858088588736147	0.966810565896068
Merged-chr10-80666787-3	chr10	80666293	80667293	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	9500.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	2.34416998115572	2.31409220500939	2.79484877904612	2.4896415637285	2.31270801499799	2.6942237467329	0.0342152433618316	0.968458144476995	1
Merged-chr17-23979701-4	chr17	23979201	23980201	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	6.19098370202319	6.26740510891666	5.71919126122488	6.96578963549972	7.11490073617074	6.69075909244012	1.35188207660426	1.46116302685103e-05	0.00055566934706682
Merged-chr1-39425177-2	chr1	39424677	39425677	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	53570.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	3.53477919148286	3.42190645156616	3.33189340503069	3.18636025028912	3.3009662427379	3.4030571442866	-0.549715290160648	0.366898235645468	0.751972999808775
Merged-chr14-25484252-4	chr14	25483748	25484748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	25063.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.19969605129012	6.66490603742543	6.46072146156632	6.61489337094672	6.76250406593327	6.29493866895125	-0.380703945122563	0.240449255327566	0.637521740454717
Merged-chr18-46360067-3	chr18	46359561	46360561	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48133.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	3.11058381649331	3.19924721501668	3.25115434163044	3.14151250642867	3.17666755411582	3.2663176575028	0.0325169837217758	0.95872245419211	0.99015359851262
Merged-chr5-134690464-4	chr5	134689973	134690973	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	4.29451676879425	4.01942710788482	4.46070624674887	4.54761373231959	4.64135193249583	4.75858763529875	0.988301232507774	0.0294745715704816	0.206545406033067
Merged-chr18-5764412-3	chr18	5763912	5764912	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	171765.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.54910732342328	5.38411669089216	5.29218523406289	5.61834486748087	5.85481747763126	5.57353124228565	0.522464667288187	0.11877388592665	0.460635632728255
Merged-chr14-75198305-2	chr14	75197805	75198805	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 3 of 16)	URR1B|DNA|hAT-Charlie	-43982.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	2.5705964378484	2.77064549066984	2.84685255589853	2.49894218524624	2.32178290668569	2.74321208110864	-1.18314748543382	0.159185484928948	0.531158781765317
Merged-chr4-139195159-2	chr4	139194618	139195618	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	1007.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.18898252684516	5.31112970061892	5.6045604916622	5.98006473449785	5.76671091219476	5.86837505306443	0.943394676237283	0.00464969212902711	0.0582416582425732
Merged-chr12-110695047-2	chr12	110694547	110695547	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010480, intron 3 of 10)	intron (NM_010480, intron 3 of 10)	1348.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	4.39695537832591	4.28982063757101	4.13878228408119	4.30340784168499	4.1672834603836	4.15943855623413	-0.201611648808554	0.664032903297518	0.907483408305124
Merged-chr3-105056936-2	chr3	105056436	105057436	+	665.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-3790.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	2.37250839233185	2.26819032513238	2.57773317996911	2.39616111321397	2.26342721618787	2.40190440041135	-0.350088375179808	0.676108688013777	1
Merged-chr6-97205717-4	chr6	97205210	97206210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301857)	promoter-TSS (NM_001301857)	-63.0	NM_001301859	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	4.9096915130682	4.74551589841513	4.76473137231438	4.83020781791967	4.65593528280962	4.94076654503959	-0.0149175333598239	0.970104445259765	0.993347985887136
Merged-chr5-145230821-2	chr5	145230315	145231315	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	-900.0	NM_001083958	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	7.31595558261061	7.7748920800821	7.29038154915115	7.18870235397799	7.47543089587646	6.99805139176189	-0.356051068811455	0.204139295815016	0.594478092121089
Merged-chr7-100855994-4	chr7	100855498	100856498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	7415.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	7.02139015853049	6.70862558886789	6.90482982477261	6.72904500602175	6.96053458927072	7.04333424548883	0.0489887978824708	0.85210907271854	0.96531854415899
Merged-chr1-36914689-4	chr1	36914173	36915173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	24854.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.54615760576522	5.77397032464903	5.71057494841047	5.52867862426067	5.40127621422457	5.77205973791717	-0.216327288806617	0.514715822705436	0.843203472095285
Merged-chr9-57633636-2	chr9	57633136	57634136	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007783, intron 1 of 12)	intron (NM_007783, intron 1 of 12)	12017.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	3.64702740985278	3.7603725294918	4.09274313745904	3.48371710322972	3.62719812694121	4.1172571365077	-0.244152595120802	0.682400179321417	0.915072334923495
Merged-chr2-93599948-4	chr2	93599451	93600451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42483.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	6.80681568748966	6.99226867290508	7.06085493202463	7.15192150106012	7.25538372325191	6.91320933034159	0.258113911293963	0.311083647121774	0.706343069085537
Merged-chr7-135768387-3	chr7	135767895	135768895	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52016.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.67409309570236	5.79687198078581	6.05325125906933	6.21461402839323	6.1727079986438	6.36968368104842	0.707516092975486	0.0188216477242274	0.15529484059659
Merged-chr3-59132077-2	chr3	59131577	59132577	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287123)	promoter-TSS (NM_001287123)	385.0	NM_001287120	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	2.99080571239481	2.91162274131799	2.71697711766007	2.88194399248168	2.94797908490688	3.04037453612678	0.348830579878708	0.624638977119746	0.892121293039105
Merged-chr11-106271643-2	chr11	106271143	106272143	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130187, intron 1 of 12)	intron (NM_001130187, intron 1 of 12)	1329.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	4.14843294684938	4.16173067382944	4.71840902766052	4.09325544240111	4.28327620733019	4.56833457213859	-0.0949848689982713	0.851384303887068	0.965215411919547
Merged-chr7-30421322-1	chr7	30420822	30421822	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	-409.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	8.40231613545727	8.26416333005967	8.49960399316629	8.42836603262742	8.8062240023266	8.43451630523417	0.256644279358026	0.260231364925908	0.657649400461384
Merged-chr8-117338839-4	chr8	117338319	117339319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-10351.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.05607215537013	7.67218419031192	7.62528672761606	8.05029267329762	8.08183568956205	7.74722140901819	0.240904126977559	0.33519961144364	0.725385451575238
Merged-chr14-20695713-2	chr14	20695209	20696209	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NM_001168273)	TTS (NM_001168273)	741.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	7.77262718849878	7.69135053545816	7.52951744379356	7.38735828260502	7.52552315860083	7.40949761613999	-0.332080553428233	0.144594454663851	0.507419146542521
Merged-chr17-70851211-4	chr17	70850730	70851730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-20.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.62309174655987	8.679958052669	8.43300508675684	8.47419428312219	8.74959231245983	8.28128739802017	-0.0868810931119795	0.707097884696232	0.923220759150193
Merged-chr12-52624856-4	chr12	52624356	52625356	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-22534.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	3.63786278630608	3.67787941691424	3.5239056714543	3.76086065734971	3.99975621702331	4.01034742859183	1.00570715066652	0.063810908999412	0.3291128814246
Merged-chr14-40937319-4	chr14	40936813	40937813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10896.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	6.54122531015833	6.46658906989221	6.31955810274075	5.85524556292439	6.12441091225037	6.37936334780816	-0.532852430929307	0.0748120421511546	0.360053236353362
Merged-chr5-107359579-4	chr5	107359081	107360081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_054054, exon 12 of 19)	exon (NM_054054, exon 12 of 19)	28387.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	4.35808804827655	4.40915779147536	4.53700219325826	4.3699375131653	4.31718306390853	4.67893678292872	0.0559221860531772	0.900082723590186	0.976728292075907
Merged-chr15-42984150-3	chr15	42983750	42984750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186568.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	3.78769359058315	3.80840419381127	3.87239921100458	3.21882044698295	3.30202169151816	3.3012147104367	-2.08368159658333	0.000666952607647316	0.0131944347544265
Merged-chr8-37215770-4	chr8	37215274	37216274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191536.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.5566754972109	3.66070356912702	3.62850581084275	3.57239694129874	3.74331998318704	3.47762273610609	-0.016345437940557	0.976886989609901	0.994769134402338
Merged-chr5-100039953-4	chr5	100039468	100040468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	-26.0	NM_026421	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	8.08510365291023	8.34162123009193	8.09846546578393	8.06449395072751	8.02519326905048	7.84878594793767	-0.278456960096584	0.209459122232258	0.600992554015832
Merged-chr14-26531981-4	chr14	26531474	26532474	+	870.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	2650.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	5.02333392889034	5.39484703453149	5.00773509653247	5.27429199889361	5.41350595179008	5.21517434095163	0.291966237845158	0.432065106163551	0.797216457194801
Merged-chr4-11146853-2	chr4	11146353	11147353	+	744.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9588.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	3.83581385493717	3.92965658076362	3.71444451312193	3.6251043606765	3.75856145748638	3.8866746502821	-0.251120652360773	0.63797496930767	0.897380718500389
Merged-chr10-77972769-2	chr10	77972269	77973269	+	709.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2897.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	5.87217251925562	5.55918352749307	6.05359159366342	5.82353207987386	5.76272795640933	5.60551475495973	-0.173044865528933	0.601195510699982	0.881884913086671
Merged-chr2-51982423-4	chr2	51981925	51982925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9217.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	5.89182081827298	5.86553459736477	5.38625512563516	5.46889843542083	5.4553478465831	5.14095939369128	-0.712737485926126	0.0490107171617596	0.281274165772379
Merged-chr2-128743153-10	chr2	128742617	128743617	+	927.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	B3|SINE|B2	44202.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.31138060194986	5.15976954097063	5.61073916183383	5.20027888341769	5.27055504419673	5.1449392605	-0.302475590541212	0.405274865800017	0.780049815379569
Merged-chr8-105861437-2	chr8	105860937	105861937	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357230, intron 1 of 4)	intron (NM_001357230, intron 1 of 4)	562.0	NM_001357230	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	5.24787377558846	5.25425053342333	5.22535185599284	5.03720127853271	5.24921365344194	5.41025612277773	-0.0162820764904546	0.963550722806329	0.991121100730027
Merged-chr10-78134594-4	chr10	78134090	78135090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35178.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	5.45552028911004	5.2800343103202	5.23697928932371	5.26114880237871	5.30717869057981	5.36425560382877	-0.0464380263642736	0.892476347593998	0.97514473212965
Merged-chr7-16613809-2	chr7	16613309	16614309	+	660.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136928)	promoter-TSS (NR_136928)	-15.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	3.12835220969264	2.90515972133386	2.99518997631385	2.80966977461453	2.70384247420741	3.12455705225539	-0.616544518062752	0.396982056645554	0.7738750578522
Merged-chr10-19937114-4	chr10	19936611	19937611	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	2585.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.63663475642114	5.55522234313089	5.31504125148749	5.27418225590854	5.06835197558639	5.21438846841758	-0.663176348001282	0.0577918769005136	0.310682678197308
Merged-chr6-5052584-4	chr6	5052071	5053071	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	141375.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.21744370476357	4.13428425843119	4.11649637691526	4.17848084189952	4.0166832355549	4.1849520361886	-0.100923499930277	0.83084797161629	0.960370002015736
Merged-chr7-83650284-2	chr7	83649784	83650784	+	710.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	5211.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.15876883473463	6.06161151744572	6.05386968682137	5.82718555470497	5.91067438755236	6.27753158891233	-0.147271606950605	0.630221515431034	0.894642529318186
Merged-chr2-91092717-2	chr2	91092217	91093217	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3961.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	5.25468941201942	4.88443802155295	5.29583996817785	5.45843869108228	5.25584028889765	5.35917125259132	0.418212432437597	0.255605252275189	0.652679746869433
Merged-chr4-152010457-4	chr4	152009964	152010964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	1573.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	7.0249098704445	7.56514041085321	6.59010082042208	6.33996622159944	6.64935443810467	6.4210025104203	-1.0100231273224	0.00248761564241017	0.036583514028573
Merged-chr5-143626389-3	chr5	143625884	143626884	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	LTR33A_|LTR|ERVL	3937.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	6.06431973971299	6.07883546673563	5.99245055861698	6.05643942822533	5.82419878023009	6.05334573223325	-0.128659416471216	0.662128643663351	0.906635074084059
Merged-chr15-89123163-4	chr15	89122664	89123664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-14.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	6.46811350602227	6.98707410022542	6.66216597332934	6.74711058244563	6.64044178669601	6.39647849188323	-0.18921246841195	0.518176445553787	0.84512183998462
Merged-chr17-34640498-2	chr17	34639998	34640998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4385.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	6.67501327692902	6.40929021291999	6.28062660642578	6.25039576105422	6.39541411291406	6.5108328557929	-0.142047516071827	0.618675700904626	0.889497316944952
Merged-chr11-83082983-4	chr11	83082474	83083474	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SRV_MM-int|LTR|ERVK	17862.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	5.1755960724005	5.06720938554779	5.23705552919065	5.1231118552728	5.10408145245051	4.83986361587892	-0.249302727067071	0.501638951733907	0.835833270717604
Merged-chr10-116505514-4	chr10	116505016	116506016	+	947.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359253, intron 2 of 11)	intron (NM_001359253, intron 2 of 11)	22433.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	4.2165647780076	4.30799730687186	4.23289243660622	4.41466944804506	4.34077948867273	3.94647836053629	0.0150814816651769	0.975136230011687	0.994454548709104
Merged-chr2-92459754-4	chr2	92459258	92460258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_211358)	promoter-TSS (NM_211358)	36.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	7.74076219628531	8.16532716451476	7.84848944495962	7.78949060815926	7.97175775564091	7.6490674376064	-0.169439844741692	0.490621037371831	0.830102183404204
Merged-chr14-50896277-4	chr14	50895790	50896790	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3035.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.33157717960277	4.14442712202134	4.529972288686	4.31487576938092	4.06645964641561	4.17022420603458	-0.40956023975121	0.389398057962333	0.769109229180825
Merged-chr6-90492139-2	chr6	90491639	90492639	+	603.958374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29563.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	3.26235493605283	3.15155598124981	3.02305617290236	3.04874842741894	3.06024395843939	3.21424295833616	-0.209483970023737	0.749044882032289	0.937140288382646
Merged-chr17-88442062-4	chr17	88441552	88442552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	1348.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	6.40810959979278	6.82053162050258	6.8205365828598	6.91683203320301	6.7728077388204	6.51974110358546	0.0918963326159113	0.748081468424056	0.936880860325556
Merged-chr8-73234712-2	chr8	73234212	73235212	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	B4A|SINE|B4	118828.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.16643935472439	3.94072694507468	4.36294474856274	4.30327314715135	3.89986064946228	4.75975254957472	0.526744951969159	0.333078563683488	0.723964294628694
Merged-chr10-89745711-6	chr10	89745177	89746177	+	999.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	CpG	686.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	6.72720113719606	6.90849146083197	6.41917626249076	6.60788896330286	6.42380568762146	6.29659425417112	-0.41150855075813	0.152623187334111	0.520882221020083
Merged-chr7-102028176-4	chr7	102027682	102028682	+	974.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-10027.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	5.35146299213602	5.35473925418049	5.44859621674303	5.37655691342578	5.6643400380765	5.35977315602598	0.202412551213672	0.553285770908584	0.862238984416102
Merged-chr5-138998251-6	chr5	138997766	138998766	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3313.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.56442244772177	6.01212514226322	5.48101280835886	6.09996933952119	6.11125938611358	5.64379975346439	-0.224332906714918	0.576756027120329	0.871715684727395
Merged-chr19-43993570-4	chr19	43993060	43994060	+	794.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7040.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	3.31107972379535	3.36791365677762	3.49067810306168	3.55109885771226	3.27168785626083	3.56095154184095	0.280049822739275	0.640722005627035	0.89857235920875
Merged-chr1-148903315-4	chr1	148902819	148903819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1019120.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.40572016479869	6.33730438989346	6.34001773195549	6.45019694001432	6.51734906570789	6.19317317097779	0.07016287582013	0.799748945243169	0.952280212549411
Merged-chr18-49833714-2	chr18	49833214	49834214	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	717.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	7.29485134173642	7.52860152846423	7.13080327898761	7.4325470401892	7.66728183851646	6.93303216103923	0.085182774559895	0.769712752358176	0.943207535850597
Merged-chr1-39576026-5	chr1	39575536	39576536	+	905.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033135, intron 1 of 6)	intron (NM_001033135, intron 1 of 6)	1311.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	6.79570867426702	6.942857016915	6.90753229155422	6.93086623814	7.10518020653115	6.95165455361191	0.184952125230077	0.451914761489874	0.809286173636239
Merged-chr3-84868231-4	chr3	84867731	84868731	+	750.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	4086.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.82547785707978	3.95418420143396	3.88811425313195	3.73110767011166	3.87708068529913	4.05163987315756	-0.00990499039587989	0.984708962303411	0.996716154138789
Merged-chr12-17882757-2	chr12	17882257	17883257	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191948.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.85749094792006	2.90017664195734	2.95753503923247	2.82459459397338	2.89013599602323	2.97070102946379	-0.0451534818545132	0.947707613925803	0.988008807662239
Merged-chr5-64354900-3	chr5	64354417	64355417	+	722.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113025.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	3.99286950524528	3.82832120616319	3.88985908283696	3.97995274241671	3.74170682586799	3.90934424016065	-0.0938401386422727	0.855397370013648	0.966184375148922
Merged-chr11-20728321-1	chr11	20727821	20728821	+	677.0	f1_balb.idr	intron (NM_181411, intron 1 of 8)	B1_Mus1|SINE|Alu	13235.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	3.31495231950503	3.4886215250697	3.56558343661161	3.28957333924938	3.14073250420841	3.53317369751048	-0.524045635282484	0.400230183357342	0.776405313146613
Merged-chr11-116078418-3	chr11	116077866	116078866	+	817.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009573)	promoter-TSS (NM_001009573)	-405.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	6.2004389384684	6.37190796746333	6.30237606233469	6.13393090135313	6.34109809581809	5.83585345766999	-0.262898883332322	0.387541776719476	0.76768118438771
Merged-chr14-64327636-4	chr14	64327074	64328074	+	970.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	89382.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	5.95709460220604	6.10946615295088	5.47061157897272	5.87349048990864	5.53243072297662	5.59420990746756	-0.3859847642454	0.275442048257104	0.672930007809293
Merged-chr9-105198901-2	chr9	105198389	105199389	+	938.625	f0_balb.idr|f1_balb.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-53807.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	2.60553500034267	2.61849044040476	2.65667990110941	2.43478148115692	2.39730446191011	2.542824890557	-1.04073900888477	0.188591704394972	1
Merged-chr9-70838014-2	chr9	70837514	70838514	+	830.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96794.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.85369942245019	6.72565323271817	7.01683808031973	6.97124778394578	6.88364464364327	7.00959279357425	0.137102321848466	0.584578732236755	0.874608531067911
Merged-chr5-124026585-4	chr5	124026084	124027084	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	5676.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.04983347512733	5.57060987617942	5.61311905874738	6.46774742617687	6.16941308227915	5.70689990387999	0.675192657339031	0.0634180005073869	0.328021693679284
Merged-chr12-57211821-3	chr12	57211300	57212300	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14328.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	3.18897719935919	3.04938109422926	3.28477058932085	3.11158755230757	2.87895477336765	3.07291173267742	-0.687242572611393	0.305284788420083	0.701501724978019
Merged-chr15-58015413-4	chr15	58014923	58015923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18871.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	6.37017349880543	6.35276121480895	5.99801126347331	6.24521564062755	6.51545871202453	6.56319023625813	0.302828825895084	0.303815991973247	0.700294220341559
Merged-chr14-59555674-2	chr14	59555174	59556174	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42285.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	3.94726756288109	3.73098026510819	3.96317112814394	4.03456218263095	3.9364176120919	3.93409288844177	0.272859036797528	0.591030890286339	0.877325810702804
Merged-chr9-96544252-4	chr9	96543748	96544748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 23 of 23)	intron (NM_053268, intron 23 of 23)	-65573.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	5.45740139933229	5.64081091170159	5.61122015760825	5.49099983413889	5.36676958377019	4.98968088233018	-0.500286870510898	0.163510706753291	0.537486622981386
Merged-chr13-80953113-4	chr13	80952648	80953648	+	679.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10926.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.88256725142247	2.74597312859218	2.79365495196331	2.72328554864295	2.63784026393566	2.86651648563278	-0.361253161489945	0.620347929604169	0.890068302891401
Merged-chr13-98912805-4	chr13	98912334	98913334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	13550.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.48720397307031	3.06353516394967	3.04857159680212	3.47620006062504	3.33862480093605	3.53358658377582	0.882511213998993	0.187956482299774	0.573357883168956
Merged-chr3-79591405-4	chr3	79590941	79591941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026352, exon 1 of 10)	5' UTR (NM_026352, exon 1 of 10)	104.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	7.5847833013353	7.81529784532158	7.13407227231753	7.34920445646467	7.63612614584106	6.96333291746755	-0.283917512904697	0.351672568563824	0.739403630741215
Merged-chr6-5256239-4	chr6	5255715	5256715	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	18.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	4.64975038105961	5.05662230028834	4.80948345041051	4.81140621127743	4.56800423727059	5.01648262783689	-0.121070737258366	0.775013574624796	0.944524767111052
Merged-chr9-21168438-4	chr9	21167936	21168936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2722.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	8.2693897139919	8.36120715868607	8.14838216357918	8.12781600349938	8.70988214934381	8.23095990102464	0.174692043392051	0.485966229908736	0.827641640456729
Merged-chr11-32538951-4	chr11	32538459	32539459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	5693.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.58174965075143	7.31454758777986	7.44009534054655	7.41195480983781	7.75143873511551	7.28547403562969	0.0852542170955051	0.738512806573724	0.934032187674406
Merged-chr2-118307811-4	chr2	118307312	118308312	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045919, intron 2 of 2)	intron (NR_045919, intron 2 of 2)	2898.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	2.80641924724983	2.88200174236085	2.93790607859357	2.89464497411894	2.84796694755167	2.89042727860829	0.0127605738115865	0.985286789665529	0.996873682039026
Merged-chr2-26021739-4	chr2	26021256	26022256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133835)	promoter-TSS (NM_133835)	4.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	5.51939724795221	5.66428890842617	6.03353715851689	5.86714411764511	5.52601788434062	6.03094467139386	0.122553418163556	0.727512299544943	0.930204882969987
Merged-chr13-98803881-4	chr13	98803360	98804360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 2 of 25)	intron (NM_172591, intron 2 of 25)	11589.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.74600328831019	5.66907583618379	5.6554053381839	5.84799180352775	6.23669109862543	5.85090045538911	0.554815520571191	0.0817996265911955	0.378378380628236
Merged-chr4-94556788-4	chr4	94556299	94557299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	-3.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	7.51599499073727	7.43925343950823	7.39636808594529	7.24670992905853	7.4038062734894	7.01146140274248	-0.313092846042934	0.199397004934738	0.587811571148104
Merged-chr10-127610771-4	chr10	127610261	127611261	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	10387.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.55421358285975	5.38955283621361	5.67576955530609	5.56379830605568	5.28400196800188	5.55178274332736	-0.140130852433777	0.680675866839116	0.914386323043327
Merged-chr19-40513835-4	chr19	40513343	40514343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009166)	promoter-TSS (NM_009166)	-31.0	NM_009166	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	4.98785785385135	4.73430026236927	4.78991901126478	4.84228496157092	4.84501303635269	4.51877278916512	-0.203275251065832	0.621244748033835	0.890625390716465
Merged-chr15-82046800-2	chr15	82046302	82047302	+	733.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	intron (NM_011482, intron 1 of 2)	796.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	6.58949509529012	6.94575539572341	6.61375073428022	6.87398396994286	6.84372166453021	6.8021391691784	0.167002207950832	0.528480683459048	0.850563640958844
Merged-chr4-146498526-2	chr4	146498026	146499026	+	741.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3474.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.12793968094508	3.36101610147889	3.22896591870362	3.18545118142264	3.28347612764169	3.66708116660685	0.564271493127349	0.383285398513652	0.764716365434363
Merged-chr15-38659430-2	chr15	38658930	38659930	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-2474.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.68985328116344	3.68465835707126	3.55379334519738	3.51271360239633	3.40288562729698	3.62451848332823	-0.496178768694759	0.380425300519509	0.762534569734688
Merged-chr10-85386728-3	chr10	85386209	85387209	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028709)	promoter-TSS (NM_028709)	-105.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.81773291485801	3.67361969377332	4.056764325543	5.514757531115	5.51663357785337	5.45108506263649	4.63556119030435	1.29913762856335e-16	4.91357471806816e-14
Merged-chr11-51606080-4	chr11	51605573	51606573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048061, intron 2 of 7)	CpG	808.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	8.52633657381907	8.60022993336688	8.42292089999721	8.28843295564232	8.10189262722242	8.1910720596464	-0.456122546135241	0.0278812632938558	0.199393567353258
Merged-chr1-184020709-1	chr1	184020209	184021209	+	759.0	f0_balb.idr	Intergenic	Intergenic	13289.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	3.69443900563051	3.8176268540178	3.61230052609808	3.38605545763382	3.31195093239455	3.2808599219502	-1.45163623224911	0.0146369095541571	0.130358950859939
Merged-chr17-25792354-4	chr17	25791857	25792857	+	946.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285982)	promoter-TSS (NM_001285982)	30.0	NM_001285982	214917.0	Mm.26783	NM_145410	ENSMUSG00000057411	Fam173a	-	family with sequence similarity 173, member A	protein-coding	5.23888025603179	5.48120632123182	5.85415456475714	5.63378606236121	5.48267992208683	5.77518149207729	0.17221464109549	0.631574900348778	0.895219738483912
Merged-chr13-38613507-3	chr13	38613002	38614002	+	760.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139063, intron 3 of 4)	intron (NM_139063, intron 3 of 4)	21607.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	3.73123710306891	3.75654248505895	4.14283347434865	3.66981393308462	3.37574141201015	3.8051714533256	-0.868831822737193	0.135985955869794	0.49290466178837
Merged-chr4-131976820-2	chr4	131976320	131977320	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 9 of 20)	MIRc|SINE|MIR	55049.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	4.94728210934179	4.66409487987782	5.11545039491198	4.84468950884609	5.0303146747033	4.66733087814838	-0.102032057890107	0.805630600806615	0.953956034266138
Merged-chr2-84638653-4	chr2	84638155	84639155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	10825.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.25603092274088	6.04435094495645	5.79471968524849	6.0933298067784	6.11018862346588	6.10085647030034	0.0756369489070668	0.802914563008304	0.953418791243346
Merged-chr15-31649880-3	chr15	31649399	31650399	+	644.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	47783.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	2.74455796764076	3.0396381475019	2.87098177852071	2.78702717897596	2.78681880177968	2.55310247168967	-0.895341356444239	0.250874914412774	0.648248729142217
Merged-chr5-102001118-4	chr5	102000612	102001612	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	68809.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.29588543258109	6.27104064767979	6.1629890100828	6.28953724983554	6.40912893138117	6.32616043583656	0.159802850204651	0.5582752914517	0.864595191540967
Merged-chr19-28612459-3	chr19	28611958	28612958	+	926.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-65766.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.48764779000592	3.62472563579502	3.64502265903794	3.18893143917112	3.4357434990315	3.21459053583854	-1.11471003972809	0.0742266779409026	0.358343631974183
Merged-chr17-87280716-2	chr17	87280216	87281216	+	851.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015506, exon 2 of 5)	non-coding (NR_015506, exon 2 of 5)	2098.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	3.80610183523486	3.49819223327023	3.65985320456801	3.67561222652359	3.62407939119439	3.6235338409558	-0.0690905057437425	0.901286427421525	0.977176770690314
Merged-chr8-115707415-4	chr8	115706910	115707910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	-516.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.04703551324464	7.28558766415099	7.2075253825379	7.40153259521645	7.52388608415941	7.76436369223759	0.566543834607715	0.0208984565999331	0.166196958498254
Merged-chr2-25626146-3	chr2	25625654	25626654	+	641.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007995, intron 6 of 9)	intron (NM_007995, intron 6 of 9)	1820.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	5.09397008421509	5.10960139237213	5.69738978286207	5.5353502624889	5.10602393543193	5.06044124455465	-0.131216252121817	0.7486807238125	0.937087780077821
Merged-chr11-32579013-2	chr11	32578513	32579513	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	45747.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.43238641223156	3.58457217766165	3.96754296733887	3.32082740174947	3.3318405965507	3.71722006833142	-0.748254347816691	0.230359735785837	0.626193168744461
Merged-chr9-53704580-4	chr9	53704032	53705032	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	1700.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.24514138165831	6.54594699219361	6.92544510146186	6.87081352678672	7.23910112307514	6.78292286125336	0.613653286540503	0.047382710608936	0.275694229089678
Merged-chr14-30627574-4	chr14	30627060	30628060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	6.1071136805417	5.82288836487132	6.01270860121561	5.98320258211594	5.89465352494021	6.21904181165413	0.0782848099678407	0.798306853318332	0.951930937621884
Merged-chr7-125706928-1	chr7	125706428	125707428	+	541.0	f1_c57bl6.idr	promoter-TSS (NM_001081022)	promoter-TSS (NM_001081022)	760.0	NM_207239	233863.0	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	5.02040831851005	5.16441705071856	5.22616578175383	5.40474321427129	5.11381743116385	5.15874822336843	0.197043959054917	0.587210640372396	0.875769926947203
Merged-chr10-20662527-4	chr10	20662015	20663015	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	RLTR28B|LTR|ERVL	62563.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.91869377473044	4.87517731860762	4.92141512051283	4.56398968189535	4.8280497617208	4.84105196270049	-0.345754603003702	0.381454187622916	0.76312705813648
Merged-chr9-118678465-4	chr9	118677884	118678884	+	872.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-33308.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.22441598739108	4.2421549000015	4.43320205672475	4.54874658343306	5.01785367666582	4.81832069409631	1.27778503673304	0.00379220725559717	0.0499749732853547
Merged-chr10-37319278-4	chr10	37318776	37319776	+	945.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180350.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.77730728075892	3.63315701276404	3.80739116092839	3.87059500990856	3.60164697557378	3.97242984221302	0.250837115364567	0.644745198209206	0.900287351502017
Merged-chr2-3358124-4	chr2	3357632	3358632	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	8437.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	4.09776730821653	3.88978777235579	4.18102553905578	3.78859752254097	3.62005196823804	3.92941123510206	-0.877898617593981	0.0958438047051957	0.412740466924227
Merged-chr3-95653840-4	chr3	95653367	95654367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.76846307266299	7.6953331791757	7.36937018142622	7.61766873381333	7.88147371050576	7.48157304708605	0.071222755828393	0.778252667815533	0.945439632982223
Merged-chr3-96255654-2	chr3	96255154	96256154	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7663.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	3.54581844440126	3.7801796657639	3.60383686302549	3.61231527660601	3.83714405726755	3.92756487176409	0.483549967268715	0.382469705461755	0.764034496138375
Merged-chr16-58511629-4	chr16	58511026	58512026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	B1_Mus2|SINE|Alu	11900.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.9291614602216	7.97070891845197	7.5430509371613	7.72291222158547	8.10603471336106	7.72539375532633	0.0512972778333427	0.841007789805167	0.962832831784718
Merged-chr10-79704414-4	chr10	79703939	79704939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	81.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	6.89831862549393	6.83863297182229	6.71551543958879	7.1110315945846	7.009788714994	6.63873078053184	0.186242194507072	0.486694771851445	0.827985697457807
Merged-chr4-148688761-2	chr4	148688265	148689265	+	797.5	f0_balb.idr|f1_balb.idr	Intergenic	B1F2|SINE|Alu	45448.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.25787842211237	3.23224602143696	3.21564440399407	2.64492761597332	2.56220002710967	2.73967519007453	-3.68534639570513	6.42363822781954e-05	0.00195143515757725
Merged-chr6-134595016-5	chr6	134594445	134595445	+	970.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-28032.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.93922314582693	4.7481563138101	4.82729829220973	4.67467057122827	4.5375066722886	4.2899252144165	-0.760446742308756	0.0747858964021952	0.360010695275317
Merged-chr7-48338751-2	chr7	48338251	48339251	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49775.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	2.52291633118894	2.58897472952583	2.56943391720021	2.30239419779237	2.43041495941636	2.2466908238952	-1.45243388858434	0.0972906628741122	1
Merged-chr2-112267054-4	chr2	112266541	112267541	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133649, exon 1 of 25)	exon (NM_133649, exon 1 of 25)	727.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	6.83739113657116	7.17863984914781	6.67475005622621	7.46249250200641	7.6977869483483	7.12852895561092	0.799918882202745	0.00550564413483724	0.0655761422839374
Merged-chr12-79297294-4	chr12	79296814	79297814	+	993.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	32.0	NM_009014	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	6.88058036339667	7.21605429158956	6.63009556804793	7.15545682207545	7.34637032939875	6.49961898957863	0.184142934936598	0.577322675191147	0.872117086580778
Merged-chr7-116626218-3	chr7	116625720	116626720	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121851.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.42484704008291	3.36584344333233	3.51662112617275	3.707920376266	3.32035420305527	3.42163401632819	0.219357429836374	0.714502768178969	0.925924007318889
Merged-chr19-11518549-4	chr19	11518071	11519071	+	915.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	12.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	5.66753946941829	5.88103031311592	5.64781806014347	5.46475297838891	5.83823092903286	5.4135630664712	-0.255145887281947	0.455892293406828	0.811226399959668
Merged-chr6-140622566-2	chr6	140622066	140623066	+	629.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178803)	promoter-TSS (NM_178803)	-97.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.9238762678082	5.07523112044901	5.11823814562216	5.32265478172564	5.35932329402617	5.18277573444051	0.533743929012524	0.134910951863957	0.490956684599956
Merged-chr15-59614385-4	chr15	59613884	59614884	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34270.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.56088462977543	6.43858490410733	6.64855313495702	6.44529515602552	6.47108940167976	6.65969809923642	-0.03901643496324	0.883603399630096	0.973400302870585
Merged-chr5-115560531-2	chr5	115560048	115561048	+	890.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007475, intron 2 of 6)	intron (NM_007475, intron 2 of 6)	1081.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	5.90353694472676	5.89094251207222	5.90687595398387	5.89756684450075	6.10453359796373	5.56098252964659	-0.0161472860121298	0.960154314719639	0.990335445597503
Merged-chr15-58697303-3	chr15	58696803	58697803	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	126124.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.99027740314087	4.25897999816137	4.03660162785016	3.93834668058491	3.98353536418764	3.95723375122943	-0.425577590320657	0.390503096051412	0.76961112307546
Merged-chr7-28386652-4	chr7	28386155	28387155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6035.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	8.0607652306574	7.77007402832732	7.72995487055343	7.8149084059518	7.9904853939621	7.59938814077139	-0.0680269589195664	0.780218854237378	0.945966807104547
Merged-chr11-32455158-5	chr11	32454703	32455703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361561)	promoter-TSS (NM_001361561)	-167.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	6.5954338833928	6.1582913070179	6.39220600818658	6.72293144660974	6.00612322751243	6.05055134980746	-0.141963022069423	0.680650609544081	0.914386323043327
Merged-chr15-27664794-4	chr15	27664309	27665309	+	765.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001242423, exon 2 of 8)	exon (NM_001242423, exon 2 of 8)	16733.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.50413190428096	7.36013347163439	7.37749603638248	7.44054394144736	7.43394227184872	7.4868248605763	0.0520787889925896	0.816570068015334	0.956731571947764
Merged-chr18-5334394-4	chr18	5333876	5334876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	63.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	8.55565868275476	8.74328004494287	8.21547114592645	8.55673956251087	8.55110057588946	8.28418486833915	-0.0775268541544702	0.74646227332392	0.936300236930265
Merged-chr16-43335712-3	chr16	43335214	43336214	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	84482.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	4.99836943214889	4.80975174688548	4.87977638819074	4.52703556018679	4.64425898479166	4.67909908540051	-0.656769619829263	0.100853746125159	0.423513683621661
Merged-chr2-120154652-4	chr2	120154139	120155139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133838)	promoter-TSS (NM_133838)	-64.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	8.38320721542167	8.42360334362081	8.06781765272629	8.08617361428532	8.33897979381919	7.78211483468672	-0.291467016004554	0.248689591332498	0.645819769301048
Merged-chr18-34624574-3	chr18	34624052	34625052	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-72.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	6.46367665277268	6.92997036288236	6.96566273574509	6.70503307172755	6.88360438212709	6.6876208018928	-0.0552268437404148	0.845173863245535	0.963760118842549
Merged-chr11-44546868-2	chr11	44546368	44547368	+	825.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27491.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.43569775590319	6.60787036393862	6.82143264123812	6.53816936340505	6.76259625192899	6.45737847601438	-0.0342445160174203	0.902506112614445	0.977534352809461
Merged-chr8-25018485-2	chr8	25017985	25018985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027194, intron 2 of 3)	intron (NM_027194, intron 2 of 3)	1274.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	4.64611691491897	4.56710843117409	4.67473751903673	4.48768961710588	4.28315381485162	4.58379367424818	-0.44867642660635	0.294911134644295	0.691802968915873
Merged-chr5-135107341-2	chr5	135106841	135107841	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 1 of 16)	CpG	450.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	2.36741214881067	2.19700916798142	2.44053688081326	2.16970617588349	2.25130377263899	2.32433540347427	-0.590322202447012	0.493638378123375	1
Merged-chr8-123034812-1	chr8	123034312	123035312	+	555.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	B3A|SINE|B2	7472.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.61116655426115	5.89340294263781	5.9899274171446	5.61911873030491	6.19309329277674	5.86406999472199	0.156570616441869	0.64767939158334	0.901510214793849
Merged-chr12-32378962-4	chr12	32378535	32379535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	246.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	7.6154933843031	7.59271997752174	7.62177386969632	7.87336247157931	7.46702050181355	7.79195671654049	0.157161231873152	0.508003723149659	0.839550861029232
Merged-chr2-34727430-6	chr2	34726908	34727908	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 4 of 26)	intron (NR_151469, intron 4 of 26)	27824.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	7.4344351178896	7.52772956091845	7.02112392578902	7.41792035721766	7.75143242139046	7.26391602099874	0.216997016403948	0.43172813050571	0.797036548625926
Merged-chr14-14352280-2	chr14	14351780	14352780	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 10 of 11)	intron (NM_008369, intron 10 of 11)	5785.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	3.19287306320515	3.24434869688223	3.62870762203565	3.146443938852	3.56254768943206	4.0109883779088	0.883087304279634	0.201847880267888	0.591469165422259
Merged-chr11-107353962-2	chr11	107353462	107354462	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	URR1B|DNA|hAT-Charlie	116758.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.23074681565394	3.32781259720156	3.33820312740407	3.21384992075277	2.97585068290598	3.29906915169213	-0.572802291253918	0.373787089846942	0.757546812967132
Merged-chr17-34119911-2	chr17	34119399	34120399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	1.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	9.02262656648639	8.96870943346462	8.67047136812269	8.75107510550927	8.82051128471991	8.69619097515152	-0.195480343570152	0.355401326314848	0.742368107443351
Merged-chr19-11050354-6	chr19	11049714	11050714	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	intron (NR_102366, intron 1 of 2)	352.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	7.08598788390158	6.89104173666139	6.83113257809768	7.19357643911131	7.3086117481847	7.225004272588	0.452301334219192	0.0628267829477624	0.325992515456102
Merged-chr17-25984767-4	chr17	25984274	25985274	+	871.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347334, intron 1 of 11)	intron (NM_001347334, intron 1 of 11)	1022.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	6.11976510850286	6.35848679496515	6.58243322866141	6.61558602155328	6.76008099002777	6.27016701794615	0.350504112394727	0.247014023943409	0.644045601901006
Merged-chr2-26351641-2	chr2	26351141	26352141	+	807.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001037747)	TTS (NM_001037747)	469.0	NM_026828	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	5.81580712207671	5.8711304422909	5.78173393657073	5.78644448687204	5.9080410118538	5.43947008035055	-0.150029486161936	0.64493911536265	0.900371814385472
Merged-chr10-108196655-2	chr10	108196155	108197155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	B3|SINE|B2	34255.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	3.82435043582607	4.23020569170073	3.83600541988898	3.80610265088918	3.92891936447581	3.68786172525486	-0.512909493871775	0.347724091878094	0.735721282615637
Merged-chr4-147922979-4	chr4	147922477	147923477	+	817.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 10 of 18)	intron (NM_011122, intron 10 of 18)	13799.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	4.86912843694539	4.71775201742961	5.03655086287456	5.22934354797775	5.06943229119895	5.19924795728925	0.629167034901379	0.0949584501697683	0.410893868516428
Merged-chr19-7056740-4	chr19	7056191	7057191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134147)	promoter-TSS (NM_134147)	-77.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	4.6783188484189	4.41719223985933	4.73032996328342	4.56858040791431	4.54543553368504	4.83145795898657	0.0870987157480041	0.838358083641346	0.962518552953479
Merged-chr2-71043526-4	chr2	71042998	71043998	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12108.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.64762463075411	6.34673818579081	6.36131879277886	6.71627689938163	6.73221350769679	6.2985539546628	0.231391802460791	0.426738846426691	0.793849313274879
Merged-chr4-142071769-4	chr4	142071280	142072280	+	840.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-12518.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	5.9942340737665	6.3177540524054	5.92404737930646	6.29144573593498	6.27612594552427	6.25573996761297	0.292302322185026	0.323111084820311	0.716523928970614
Merged-chr9-42472237-4	chr9	42471759	42472759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173038)	promoter-TSS (NM_173038)	-1.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	6.03090636715181	6.11026196557477	5.99807729524309	5.76123757408407	5.93496361879944	6.01352438276968	-0.253763045212136	0.39087296532774	0.770030013944896
Merged-chr8-105345237-4	chr8	105344734	105345734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2736.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.69887844692204	6.69490387050593	7.00927137867095	6.84249357593779	7.08956799382105	7.00196142938032	0.284592516144226	0.274958662054368	0.672331257228241
Merged-chr11-77441768-4	chr11	77441244	77442244	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22169.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	6.37726094236622	6.29487978501886	6.02847232529404	6.34037999988307	6.56735284542762	6.18232279608586	0.218934201142231	0.460394101187463	0.814484678564579
Merged-chr3-79089262-4	chr3	79088757	79089757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 11 of 23)	intron (NM_001099624, intron 11 of 23)	55630.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.64588898292622	6.51406974842333	6.53414387128353	6.3567202676237	6.62914358195198	6.28929381267268	-0.195464630489602	0.479473781975794	0.82426854740066
Merged-chr4-32657069-4	chr4	32656596	32657596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081392)	promoter-TSS (NM_001081392)	-23.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	7.11356179503927	7.43171726731154	7.53169081161474	7.6277037822112	7.76096844852626	7.37073062203135	0.346917109131286	0.175976007326553	0.556082959363853
Merged-chr2-167779005-2	chr2	167778505	167779505	+	875.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87828.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.47018195406001	6.64062526495324	6.85392222908375	6.41393826440386	6.53929004781524	6.37474802342449	-0.330308615344038	0.230499706942579	0.626341302534829
Merged-chr11-107347956-2	chr11	107347456	107348456	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B1_Mm|SINE|Alu	122764.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.39732892483626	3.37281921854415	4.15873551098134	3.56914900898816	3.48326712193157	3.64627475284982	-0.420023905281375	0.51424048771115	0.842998591384006
Merged-chr16-33583969-4	chr16	33583357	33584357	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	65262.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	5.90362726703946	5.92259111935614	6.12643416931357	5.98499183786554	5.97930027873559	5.94325580136484	-0.0158140910435129	0.957113976744794	0.989887454023164
Merged-chr8-71471231-2	chr8	71470752	71471752	+	721.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	2058.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	2.16130937170091	2.16628590516677	2.50059408636005	2.1556288187773	1.99036735460734	2.32808069736884	-0.838407189963312	0.368870508431928	1
Merged-chr11-100619667-4	chr11	100619151	100620151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019795, exon 1 of 14)	5' UTR (NM_019795, exon 1 of 14)	517.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	8.1554842693151	7.8375692872761	7.83652190047696	8.14428976190649	8.21457336371319	7.98079948015053	0.233629172399427	0.309377738889286	0.704989809598787
Merged-chr18-61087859-2	chr18	61087359	61088359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17713.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.39842210298881	5.46427522328569	5.56218426030226	5.76834545816135	5.81186377912113	5.53880277529595	0.466598351429993	0.149659710924821	0.516117590626348
Merged-chr1-120122372-4	chr1	120121842	120122842	+	867.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	1155.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	6.21544576510718	6.62731673624475	6.62551459843452	6.07164613472979	6.23521232777104	6.19517278758016	-0.543279954307266	0.0649393805289958	0.332276225252532
Merged-chr12-8509875-4	chr12	8509376	8510376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9867.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	6.08747814453606	6.67331967047476	6.44272533023807	6.6356577557065	6.84091569398645	6.50244603273458	0.396315732611585	0.192407987674997	0.579480376374011
Merged-chr14-55588163-2	chr14	55587663	55588663	+	579.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029855, intron 8 of 10)	intron (NM_001029855, intron 8 of 10)	2858.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	2.62976514704285	3.04576954185974	3.2784549513218	2.96110263959934	2.95161259055418	3.24354728350463	0.202855011977479	0.793762261299336	0.950531747588938
Merged-chr11-69416015-6	chr11	69415530	69416530	+	960.0912480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2355.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.32145821168897	5.48809215271621	6.22407148015768	6.87880225923503	6.4753542156744	6.64475803035572	1.00429488384834	0.00461456015366362	0.0579312494366389
Merged-chr3-54601290-3	chr3	54600791	54601791	+	944.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91524.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	2.92981538584323	3.01519495229622	3.0827597694997	3.90550133506707	3.58645935267399	3.78379482811449	3.32887519831755	4.54838191049979e-06	0.000204022513212327
Merged-chr17-86674383-1	chr17	86673883	86674883	+	756.0	f1_c57bl6.idr	Intergenic	Intergenic	-79481.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.19353573927772	2.05517251733389	2.28478355746594	1.8358651934067	1.85146531613171	2.03391074763642	-2.47542260187039	0.0217979777657735	1
Merged-chr7-126584771-4	chr7	126584217	126585217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138310)	promoter-TSS (NM_138310)	-291.0	NM_138310	171504.0	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	7.46205121163822	7.59650827933479	7.42887102974089	7.44650401713107	7.59484746779565	7.42201023627613	-0.00927182845963457	0.967548211941361	0.992574844153271
Merged-chr14-72689681-4	chr14	72689171	72690171	+	898.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	L1_Mur3|LINE|L1	20332.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.62795391834552	3.40640105159535	3.69380369757695	3.64740371264051	3.36245886228242	3.60964708186021	-0.131175738780745	0.822334722345879	0.958041123079214
Merged-chr5-115653945-1	chr5	115653445	115654445	+	786.0	f1_balb.idr	promoter-TSS (NR_151603)	promoter-TSS (NR_151603)	-359.0	NR_151600	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	2.79183753490209	2.84116538446789	2.98449563070044	2.79109507336209	2.69968379000054	3.05600853346842	-0.103461703608427	0.886215744494951	0.97374292322368
Merged-chr1-86064327-4	chr1	86063841	86064841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027357)	promoter-TSS (NM_027357)	-278.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	6.72764971384846	7.07514792262585	6.50692021345153	6.63339175802577	6.75194308581993	6.43247549555678	-0.284948413330759	0.329106950928484	0.72115269198792
Merged-chr6-21949541-4	chr6	21949040	21950040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023626)	promoter-TSS (NM_023626)	-31.0	NM_001311061	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	7.86768949448098	7.60956789499103	7.2606894745971	7.69647695967357	7.51681507172119	7.19150469367469	-0.17505393982676	0.530290565673486	0.851072941285938
Merged-chr6-57811923-2	chr6	57811423	57812423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	13202.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	3.58976709024311	3.68371952099093	3.55370184738037	3.51292584426198	3.55651094145326	3.57001750476469	-0.237766637671323	0.669767517183374	0.909740802307883
Merged-chr7-16104144-6	chr7	16103604	16104604	+	874.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	5524.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	4.86752473490666	4.93879368979159	5.12443477117399	5.02396785144273	4.89065688079027	4.83643248133285	-0.113209865369119	0.766875237056031	0.942573703853445
Merged-chr7-63914897-2	chr7	63914414	63915414	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-1943.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.93461567981965	5.83813151278233	6.02080411977031	5.62895492196163	5.84708203013514	6.29850374252702	0.0266407011894289	0.936670827753531	0.986037792257163
Merged-chr14-21812924-4	chr14	21812433	21813433	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18628.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	5.14659127154348	4.46196988668862	4.80073932691146	5.41731358202181	5.20772075234257	4.98498578432267	0.804697938671356	0.0635476065055961	0.328508277964565
Merged-chr6-134705901-4	chr6	134705394	134706394	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	64954.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	5.93348550797053	6.22296691582001	5.92748717912823	6.19828163386912	6.36392702893665	6.1292038129276	0.33597376986373	0.258968980884712	0.656570729664304
Merged-chr14-31376937-2	chr14	31376437	31377437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	40299.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	6.89066053432359	6.47407510663053	6.44265821351656	6.79826497393483	7.00281650527605	6.68164170999938	0.336385010603703	0.240025570614712	0.637026271998881
Merged-chr17-88549774-2	chr17	88549297	88550297	+	758.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028658, exon 6 of 22)	exon (NM_028658, exon 6 of 22)	19673.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	4.11781921363963	3.9434626215263	4.49222069306468	3.93145103614444	4.13786053155998	4.55706249766581	0.0846672047581388	0.873694063991883	0.970440430875665
Merged-chr6-113495190-2	chr6	113494690	113495690	+	707.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	6628.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	5.07427447691592	5.21229647812184	5.16323448885907	5.07452233848874	5.00401288538437	5.22690819036186	-0.114177091070866	0.751912433870029	0.938030338790992
Merged-chr2-33047063-4	chr2	33046567	33047567	+	909.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 6 of 29)	ORR1F|LTR|ERVL-MaLR	39390.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	3.78084567902228	3.92285069672817	3.41059612737947	3.80570185543389	3.94427393588945	3.82983774377052	0.419377467155897	0.46887970429941	0.818756005862319
Merged-chr19-32138863-4	chr19	32138366	32139366	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 7 of 9)	intron (NM_144792, intron 7 of 9)	-35726.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	3.69022064545954	3.47807535433055	3.55544062893895	3.3802392693462	3.33076060687434	3.62553070832654	-0.495866074777378	0.398808808950415	0.775423220616012
Merged-chr6-124661363-4	chr6	124660855	124661855	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1749.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	3.84829490660524	3.5799990234218	3.61720563841722	3.77521782130991	3.52818031246553	4.07688293363389	0.371696989539707	0.520175506214975	0.846225923225456
Merged-chr2-155101849-1	chr2	155101349	155102349	+	656.0	f0_balb.idr	Intergenic	Intergenic	-1770.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	4.28802072782381	3.89520639257774	4.69409794044719	4.80455812242054	4.92856701842133	5.15789763542968	1.54770819690687	0.00173251231842023	0.0276795346476495
Merged-chr4-97772317-4	chr4	97771805	97772805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	CpG	-5321.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.80825011351697	6.37295873487196	6.73939461250877	7.01418775036846	7.10431160347141	7.05220061119549	0.63146347011405	0.0181765317999407	0.151896440495075
Merged-chr9-7571370-4	chr9	7570877	7571877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-19.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	7.29207491436524	7.73299863773557	7.52993807312659	7.662556432428	8.11620860538348	7.70058697962715	0.458396697485444	0.0829079444730479	0.380987557121549
Merged-chr6-17637788-2	chr6	17637288	17638288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	778.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.46375053458377	6.88963567257191	6.79552303742497	7.6065135782896	7.26418536878102	7.49564927774516	0.543759114200294	0.0646124603604583	0.331255305093839
Merged-chr19-5816125-4	chr19	5815623	5816623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13451.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	6.71691608588336	6.04785682021395	6.43991636473647	5.94982545087925	5.80290294188928	6.15412386902163	-0.779854149168995	0.0179023623894344	0.150183427170604
Merged-chr8-85499359-3	chr8	85498841	85499841	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	B3A|SINE|B2	6724.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	3.54542910201112	3.06427467951845	3.47324860897551	3.24739570258333	3.12655780100307	3.54335292062166	-0.251349131913204	0.706437885310452	0.92295932039107
Merged-chr11-121800132-3	chr11	121799639	121800639	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30079.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	2.97432281805469	2.94645035329837	2.59987581417448	2.83677590373609	2.85829593676038	2.93523135134321	0.0977682334640887	0.897530222563789	0.976055448838318
Merged-chr7-122138844-2	chr7	122138344	122139344	+	770.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 4 of 5)	B4|SINE|B4	5803.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	4.8667916466898	4.22353138434869	5.20987796316083	4.86667571135609	4.68510207266724	4.85538386513694	-0.0476301914759537	0.921996867832103	0.982542868764899
Merged-chr15-91194756-4	chr15	91194245	91195245	+	966.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2738.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.72275159521514	4.83501894475046	4.5761298195953	5.250960482405	4.96226666558303	5.17300127953288	0.885054415788624	0.0252323531296717	0.188062848370989
Merged-chr13-30725101-4	chr13	30724623	30725623	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24110.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.07655301257469	4.14487009520643	3.88409515425591	3.73529432638284	3.82181757351579	4.05164937029997	-0.538499965609064	0.296996648361664	0.693586784083001
Merged-chr1-85344975-1	chr1	85344475	85345475	+	860.0	f1_balb.idr	Intergenic	Intergenic	-74409.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.12188795378698	2.83896752072032	3.04256443664842	2.6318458562266	2.45791502710809	3.05845868975352	-1.3443999240474	0.11260221823116	0.448338447691312
Merged-chr3-59120684-4	chr3	59120184	59121184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	MER20|DNA|hAT-Charlie	10078.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	5.24777314325586	5.15036699539434	5.28588166925925	5.00434382534494	5.08752623071135	4.98218083640072	-0.408428815594614	0.255617740924189	0.652679746869433
Merged-chr11-20201206-4	chr11	20200680	20201680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008996)	promoter-TSS (NM_008996)	-232.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	8.51282014908981	8.36631458178595	8.10190347994618	8.31050072142338	8.40121826389762	8.05496329081609	-0.103783038460431	0.658642085096936	0.905024110242537
Merged-chr16-70385720-4	chr16	70385225	70386225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	71776.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.58789429650747	4.47722273951564	4.74420691457804	5.15435224136241	5.04941851425564	5.44940722359998	1.37330445030678	0.000614779286696529	0.0123561726781268
Merged-chr8-69008052-4	chr8	69007551	69008551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80685.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.05699009277288	5.87456539833751	6.07141801153718	6.22217024568001	5.98969869268592	6.02008020491444	0.140660815188125	0.6343810522212	0.896341969659052
Merged-chr4-132330909-3	chr4	132330355	132331355	+	834.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1317.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	4.77021321184597	4.56855348022829	4.79638576170411	5.70832269658447	5.51201203254187	5.5318871950016	1.82952943092515	6.9439840845825e-07	3.91725442515214e-05
Merged-chr7-100962563-2	chr7	100962055	100963055	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	MIR3|SINE|MIR	1811.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.42079431263054	6.30763865175352	6.45119717006211	6.11736532924449	6.18397475895055	6.28703544178362	-0.327683759242333	0.232714069832533	0.629017422122707
Merged-chr14-55737625-7	chr14	55737137	55738137	+	905.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8047.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	6.82318561632107	6.84098381569763	6.95888394113527	6.98687709259722	7.22425944253756	7.18213339887996	0.40441446797073	0.099008154112166	0.419577424863619
Merged-chr2-79060528-4	chr2	79060022	79061022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190844.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.80654676048335	4.4783952826885	4.61436317984848	4.58724120580382	4.58360949612396	4.32748818672171	-0.311290006644195	0.476060454790488	0.822323655123358
Merged-chr1-165679220-2	chr1	165678720	165679720	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	MIRc|SINE|MIR	28874.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.90176361024876	4.23174918120475	4.72651978819182	4.20519978855603	4.28350090189283	4.345993124421	-0.937572717365456	0.0517122298002448	0.290165973242887
Merged-chr17-26466921-4	chr17	26466407	26467407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41565.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.41941426216165	5.53782960100157	5.27960615356697	4.83905148827216	4.99739849844336	4.92409192070352	-1.02661687408596	0.00477694001267719	0.0593240525969902
Merged-chr1-74441491-2	chr1	74440991	74441991	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 24 of 25)	intron (NM_176972, intron 24 of 25)	32107.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	2.05458407656056	2.0976620589978	2.03660838072171	2.22944629887956	2.06122276130336	2.30971233490087	1.01473144874597	0.264988086532289	1
Merged-chr13-103920500-4	chr13	103920005	103921005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	81.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	8.9179973864134	8.67343194438575	8.45726961198875	8.85802013666889	8.51359802139564	8.4140270465801	-0.123290964164444	0.613903582358206	0.887327843261214
Merged-chr16-20014269-3	chr16	20013769	20014769	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-31220.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	2.98338689562322	2.64000266467254	3.18067920304681	2.86895589362594	2.75632612814724	2.9731476089001	-0.398115665242742	0.596407297246068	0.879911021114935
Merged-chr11-31732443-3	chr11	31731918	31732918	+	964.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60556.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	4.90131380515989	5.047981211297	4.84860568756005	7.18119065738841	7.39544709837397	6.68300620001886	3.88809401442934	2.21386626333033e-25	4.00459530519979e-22
Merged-chr10-100487472-4	chr10	100486954	100487954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110013)	promoter-TSS (NM_001110013)	-107.0	NM_001110013	237500.0	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	4.87767494238827	4.92658590527015	4.94779583525817	5.04577688982324	4.79932162870984	4.6170768362045	-0.171634856611041	0.666376247901787	0.908149841255908
Merged-chr2-120094167-3	chr2	120093682	120094682	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	60393.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	2.8399314647665	2.84431955734509	2.64960479475531	2.70839018155117	2.53291868665631	2.96818567125663	-0.207102448526038	0.78960734069782	0.949278919326382
Merged-chr8-123983013-4	chr8	123982509	123983509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019552, exon 1 of 13)	5' UTR (NM_019552, exon 1 of 13)	113.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	5.76162977371525	5.93773351057524	6.2567838118688	5.90409564263131	5.71236676384349	5.99156097533064	-0.218313245964701	0.49931357562985	0.834407103145886
Merged-chr9-107971861-2	chr9	107971361	107972361	+	780.583313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011634, exon 15 of 15)	3' UTR (NM_011634, exon 15 of 15)	-3706.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	2.91194602629896	2.73428016777534	3.23693973062036	3.01437980855403	2.96887216675974	2.97043018781481	0.0633543987076207	0.929620500086282	0.984182996007117
Merged-chr17-23719585-3	chr17	23719023	23720023	+	970.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6813.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	3.35327828563897	3.28585179312776	3.54205996442136	3.07672631209515	2.68774883718694	3.06427266614349	-2.06542078554292	0.00618617517307647	0.0713173643391169
Merged-chr7-90132580-4	chr7	90132077	90133077	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	2364.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	8.31444583130043	8.88420557671624	8.1971839829063	8.32831040602784	8.73196256246584	8.35577694357193	-0.0266627058825537	0.922882324862268	0.982621045978137
Merged-chr2-145934762-4	chr2	145934268	145935268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025820)	promoter-TSS (NM_025820)	-16.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	6.49778776434193	6.64218737056847	6.04207895581199	6.18154385756729	6.50106677574828	6.44175525183947	-0.0778071935705308	0.801866037031945	0.953086016975963
Merged-chr19-46607694-4	chr19	46607202	46608202	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	8596.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.39569272912069	4.03366259268719	4.36906056189123	5.36134687084475	4.94403013689851	4.48846685077833	1.69282808850576	0.000506748962125555	0.0105970262982014
Merged-chr11-83645506-2	chr11	83645006	83646006	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3872.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	3.32053234455304	3.3091244184516	3.3438728056034	3.26067868898221	3.01187729330713	3.18735532502959	-0.718901798912979	0.257189425132604	0.65447682070026
Merged-chr7-139249076-4	chr7	139248605	139249605	+	957.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	623.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	7.55022951957641	8.26097940561981	7.51658544347529	7.85600555476808	7.82993114943385	7.5103909347192	-0.12701649385851	0.667605535925836	0.90879890451381
Merged-chr8-86807859-4	chr8	86807275	86808275	+	636.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61769.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	3.49490877878922	3.68542361775494	3.82471634591303	3.30917038951941	3.01165289908464	3.55099658005327	-1.41510444415664	0.0318095661780976	0.216300004404004
Merged-chr11-116397590-3	chr11	116397098	116398098	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	URR1B|DNA|hAT-Charlie	15434.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	4.16396246973348	4.08766094780413	4.15688934790336	5.70061952007317	5.37063415765168	5.3580144186383	3.21303559621311	6.70481914103027e-13	1.3220250973622e-10
Merged-chr6-73711724-1	chr6	73711224	73712224	+	688.0	f0_balb.idr	Intergenic	L3|LINE|CR1	-240703.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	3.41297811978152	3.45514853289789	3.55437941153142	3.49003690429353	3.33348072288151	3.40854205482426	-0.235218965777747	0.687081468088761	0.916983035113856
Merged-chr11-105420359-2	chr11	105419859	105420859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	Charlie4a|DNA|hAT-Charlie	36376.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.8912691533515	5.28536206688072	5.78367881894883	5.73625144614869	5.38947145456646	5.64026820207388	-0.157856723906432	0.665552897330543	0.907855843812957
Merged-chr4-136016036-3	chr4	136015545	136016545	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	5604.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	4.30319514662938	4.19978917934951	4.52468224296733	4.67928536909913	4.51914641271473	4.33183622458008	0.466627729308446	0.301068414353711	0.697749508997677
Merged-chr2-127273957-4	chr2	127273450	127274450	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139308, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	3721.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	4.79300300076494	4.75892769698333	5.25388627416328	5.51931026521942	5.41219905825085	5.64852495694965	1.19591054490586	0.00157929803024091	0.0257263567933214
Merged-chr5-107360088-2	chr5	107359588	107360588	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054054, intron 13 of 18)	intron (NM_054054, intron 13 of 18)	28894.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	4.85550993972691	4.68878605588371	4.87086290110866	4.75580962896382	4.8456626767221	5.1364997044898	0.244998991398024	0.538859866036346	0.8555132938972
Merged-chr4-102649140-3	chr4	102648635	102649635	+	639.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	59292.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.89039285809633	3.58248679218513	3.66790455375836	3.38963531280392	3.2624158549355	3.34923242733178	-1.46200669622428	0.0145764842740334	0.130011802280392
Merged-chr3-115902504-4	chr3	115902005	115903005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027193, intron 4 of 7)	intron (NM_027193, intron 4 of 7)	14322.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	4.1787803296419	4.24954668921148	4.33764880857202	4.051893611069	4.07453432011191	3.988987175426	-0.596469068285559	0.208172988594071	0.599041414336639
Merged-chr11-98768909-2	chr11	98768409	98769409	+	568.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313983)	TTS (NM_001313983)	6468.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	3.65918232307899	3.56839003303147	3.71245497323436	4.12058802412148	3.62877391875244	3.61939116171731	0.552436585961846	0.333687107886766	0.724517434137507
Merged-chr4-116720820-4	chr4	116720338	116721338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-117.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	5.03024332666317	5.30212241376955	5.11996960034962	5.16259182868995	5.304566645418	5.07975947871558	0.0708252952877861	0.846050770615934	0.963949453265197
Merged-chr11-5758006-4	chr11	5757516	5758516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	RMER16_Mm|LTR|ERVK	-4134.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	4.76988020813152	5.12054431433845	4.73727197419969	4.6174825394031	4.41909724424725	4.91453941269334	-0.554863522777034	0.201661012312101	0.591183995476557
Merged-chr19-55642108-4	chr19	55641627	55642627	+	917.757141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 4 of 4)	non-coding (NR_045318, exon 4 of 4)	60077.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.77406881522424	5.58713512797427	5.98895995356671	5.66961782592193	5.93694611988195	5.65811735424906	-0.0223082488905932	0.945881662432475	0.98796006280508
Merged-chr15-81123854-4	chr15	81123382	81124382	+	658.6190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	B1_Mur4|SINE|Alu	-18835.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.55665185157791	5.36759758865875	5.82819328373419	5.38329184411815	5.27412608794267	5.48241695850732	-0.404755715635485	0.2458384034433	0.642837179023604
Merged-chr16-94236917-4	chr16	94236424	94237424	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	53367.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.91348310082464	3.69457219706419	3.59473289987784	3.46049226983465	3.39137780735554	3.31600813231853	-1.28087558789336	0.0304363628322321	0.210851545003886
Merged-chr10-127745671-2	chr10	127745171	127746171	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	6127.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	4.7778602986263	4.93924602394399	4.79693107043165	5.34584083365444	5.33946743864594	5.1932287972806	0.959053927651242	0.00907492532835318	0.0940942537970855
Merged-chr10-40093693-4	chr10	40093202	40094202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	48552.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.90628274944737	7.08126887937835	7.14533454206446	6.90683604450919	7.01705828325339	6.91504267967498	-0.142872022256084	0.560562807567671	0.865261302076164
Merged-chr2-160057678-4	chr2	160057162	160058162	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41009.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.1505061867372	5.7094790390097	5.8084848219227	5.91946436263001	5.8552040013125	6.12235437061998	0.0956917775827923	0.766426967912427	0.942467872936068
Merged-chr11-68063409-3	chr11	68062894	68063894	+	735.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	96936.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	3.58792583467099	3.47231094977908	3.72557171683819	3.31235386394167	3.58855190362323	3.53916992971414	-0.380185625745574	0.516832076684155	0.844319382666494
Merged-chr6-40476351-4	chr6	40475853	40476853	+	928.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212468, intron 3 of 6)	intron (NM_212468, intron 3 of 6)	4885.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	3.79556495361121	3.84134066496345	3.69670445377452	3.84761985682342	3.81054523438693	4.06366635791814	0.382511693439887	0.464821637553542	0.816595063921171
Merged-chr9-95560771-8	chr9	95560302	95561302	+	932.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	985.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.26912518858378	8.00966126895525	7.60676828437822	7.45994520000489	7.69840644921034	7.64498211484708	-0.0927508404548889	0.740371057347545	0.934528157499283
Merged-chr11-86544870-4	chr11	86544370	86545370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	-63.0	NM_001114334	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	7.4217030709604	7.08854139331293	6.94867884055314	7.38577602557818	7.39080091465252	7.46628683081326	0.350136359590705	0.168526686518619	0.545164589147318
Merged-chr7-126894941-3	chr7	126894439	126895439	+	700.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 3 of 5)	L2c|LINE|L2	3339.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	4.02909455046617	4.00427028947369	4.29977510150638	4.19232344083449	4.29345981221292	4.44864888754993	0.561736142229562	0.236321227539274	0.632720263621021
Merged-chr7-102018266-4	chr7	102017775	102018775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-120.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	8.54829535196865	8.60392003847191	8.5965017223647	8.69551058034959	9.01935525556071	8.43386946448985	0.225600387316981	0.337896534622491	0.727820213638837
Merged-chr4-128756308-4	chr4	128755797	128756797	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2961.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	3.50844217574111	3.00526766577692	3.27243268329959	3.37588426604857	3.2235170449564	3.34467419172914	0.132229800209739	0.840733155842447	0.962819298477451
Merged-chr17-44664094-3	chr17	44663591	44664591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	72085.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	2.98746426869109	2.82531322942428	2.87713210361678	2.65051483400105	2.71544556026967	2.76571723276728	-0.98991438893262	0.175153086978339	0.554867054796835
Merged-chr6-125131862-4	chr6	125131365	125132365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138747)	promoter-TSS (NM_138747)	-18.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	7.49361328362436	7.81240992769034	7.40781709227631	7.43438516328848	7.7919218651729	7.38748169975161	-0.0436300496460622	0.867141199097998	0.969304239091486
Merged-chr3-79299604-1	chr3	79299104	79300104	+	621.5	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-45772.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	2.78402956651545	2.64516346496795	2.7476245418021	2.41056090364803	2.47566765648377	2.82029221861701	-0.846704971881318	0.295430563446558	1
Merged-chr10-127426912-3	chr10	127426409	127427409	+	743.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	6042.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	4.37282316055171	4.32097780919875	4.00021139733733	4.34622574602973	4.27843324656799	4.26998804062683	0.124547664279743	0.791637802593575	0.949797147757395
Merged-chr1-80613581-4	chr1	80613075	80614075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	51777.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.50371436349609	6.17007962498232	6.3862963592607	6.48642162857455	6.55100275446225	6.53607005447972	0.2694599340344	0.327256197278882	0.719396012109034
Merged-chr9-61032299-4	chr9	61031824	61032824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15255.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.34324465862	4.28207395125017	4.28493208191885	4.84141861414554	4.51169279593014	4.97889506042869	1.17136878205113	0.00852278720127885	0.090121245068498
Merged-chr7-3506122-4	chr7	3505619	3506619	+	777.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3495.0	NM_177363	245126.0	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	2.30157899352773	2.47994418138245	2.47796436696719	2.47892037358763	2.45817847916411	2.67538243505002	0.699990141355095	0.387738281746045	1
Merged-chr6-124902151-3	chr6	124901698	124902698	+	768.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9507.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	4.91065207250704	4.63188038031987	4.40429570499638	4.64236767572526	4.45291698612936	4.3793612570643	-0.427470698857149	0.339306837629833	0.729164516858914
Merged-chr4-56793229-2	chr4	56792729	56793729	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 6 of 36)	RMER15|LTR|ERVL	-9100.0	NM_001081420	230234.0	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	2.22455343073598	2.20127703304345	2.70916363650506	2.64543530044471	2.2808471799298	2.66406565275726	0.831052588196862	0.365233597743168	1
Merged-chr6-29868073-2	chr6	29867573	29868573	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347084, intron 3 of 17)	intron (NM_001347084, intron 3 of 17)	8477.0	NM_001171001	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.26936099011268	5.36954073528587	4.72813340245478	5.32526265486807	5.31550308382634	5.00615408537642	0.131181667693984	0.747499032589945	0.936632541920315
Merged-chr1-128614676-2	chr1	128614146	128615146	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22347.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.26890535191777	5.3460714672151	5.44086912446157	4.52195326519985	4.41421943813557	5.02116370106396	-1.51216121765556	0.00027223268856581	0.00643155523855308
Merged-chr18-80151775-4	chr18	80151220	80152220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175028)	promoter-TSS (NM_175028)	-238.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	8.29634662152567	8.29363307395247	7.790115406735	8.16424884884818	7.86692449059172	7.84638452442863	-0.263533596211613	0.299062296675966	0.695910721567587
Merged-chr1-153489354-4	chr1	153488886	153489886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1726.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.37468115208843	6.39735796782751	6.5281168766718	6.39976798522083	6.62826722514245	6.55298409354221	0.167697233653006	0.531174599005268	0.851467520113092
Merged-chr11-75514501-3	chr11	75514009	75515009	+	858.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004157, intron 3 of 10)	intron (NM_001004157, intron 3 of 10)	968.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	3.69758809133566	3.78723588693609	3.74773798202216	3.67380428735685	3.45600062191124	3.81704071452437	-0.330018950902826	0.551765775099439	0.861472710145122
Merged-chr17-55931871-5	chr17	55931345	55932345	+	874.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	13414.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	5.81987692214006	5.80577078980776	5.36651795416912	5.7966679195976	6.45494338016793	5.71407810283226	0.630897451141272	0.0963950742796468	0.413883940379681
Merged-chr12-108796339-2	chr12	108795839	108796839	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	3028.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	3.12090430472245	3.07220828155866	3.12265702762481	3.46317612818924	3.12360790594698	3.62891458259018	1.26525390016964	0.0548085911580749	0.300768318371207
Merged-chr11-51689092-1	chr11	51688592	51689592	+	1000.0	f0_c57.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-458.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	8.16830239868093	8.44878593784704	7.97374849531333	8.14394016935145	8.24300974746758	7.84122362443076	-0.175048678943208	0.480622503955549	0.824637852794732
Merged-chr8-111546455-3	chr8	111545964	111546964	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	8121.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.04449696583235	3.48263031622531	3.68512730487405	3.10575445747718	2.8809551871447	3.25355942807584	-2.9775948931185	6.05998992382338e-05	0.00185586912617408
Merged-chr10-10555376-4	chr10	10554880	10555880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2827.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	6.72632650081129	7.26513591742605	6.91437143092047	7.11410187229663	7.27836119782841	7.13391585643066	0.281117800155399	0.30088798714224	0.697653874358754
Merged-chr13-54695419-2	chr13	54694919	54695919	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	4.02014104201042	4.12273133484593	4.49800453956879	3.86798432609806	4.22963572908441	4.19533087252364	-0.308308085669028	0.547806871222366	0.859445606128575
Merged-chr10-127661339-2	chr10	127660839	127661839	+	890.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009284)	TTS (NM_009284)	5364.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	4.07955470699743	4.05328726958811	4.56152307637285	4.18189706386666	4.19837986233763	4.73209121313627	0.379286546245341	0.462089871489726	0.815108250633334
Merged-chr11-62649243-2	chr11	62648743	62649743	+	815.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	579.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	4.5651456894435	4.45571885388091	4.74343731529123	4.48922525424131	4.81102544410476	4.48718769143529	0.074958002514393	0.86317754824175	0.968203690581793
Merged-chr6-29272563-4	chr6	29272063	29273063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023516)	promoter-TSS (NM_023516)	-63.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	7.89953013062997	7.7411299728777	7.50943470375007	7.77803128331574	7.83978348205742	7.07728566316547	-0.159884349351048	0.583825472472304	0.874225271981634
Merged-chr2-23039808-1	chr2	23039308	23040308	+	1000.0	f0_balb.idr	intron (NM_001077190, intron 1 of 10)	CpG	433.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	8.58061613707024	8.63644577354468	8.46123760842764	8.58213770791971	8.76559807762251	8.55971818479095	0.108646415874438	0.59778411893465	0.880469749736855
Merged-chr2-131254159-4	chr2	131253663	131254663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	4.66539985524377	4.48628174533849	4.48227934717573	4.59221434704321	4.52528886149065	4.17031175034029	-0.242770814069396	0.590716022768333	0.877301111216348
Merged-chr14-55635760-4	chr14	55635269	55636269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024267)	promoter-TSS (NM_024267)	-85.0	NM_024267	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	6.10802147178795	6.35748676186201	5.83054575036388	5.97845442360832	5.82289159910526	6.08437257906861	-0.293466245598762	0.354456914188698	0.74162462962729
Merged-chr19-34505277-2	chr19	34504777	34505777	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 6 of 9)	intron (NM_001111100, intron 6 of 9)	22197.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	3.07303530055627	3.35962587642742	3.67680333695645	3.20649218375923	3.12809272488565	3.60264920281093	-0.244419800383109	0.720021567845693	0.927998057888854
Merged-chr1-35972411-4	chr1	35971931	35972931	+	917.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95969.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.85181712200133	5.09913107700103	4.8882841717235	4.88453567888127	5.09797598873886	4.87805331072007	0.022210607679692	0.954211283340472	0.989495550016789
Merged-chr3-59206785-4	chr3	59206208	59207208	+	978.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4174.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.73524615860897	7.54829483642918	7.38004047396884	7.46462157511724	7.68211859086263	7.60129834014295	0.0270988958979921	0.909218533351703	0.979384717565381
Merged-chr7-123207663-4	chr7	123207147	123208147	+	936.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7219.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.86602086042983	3.92012707942673	3.74859264010447	3.97378006403136	3.86235966710621	3.65274162521141	-0.0293488124934287	0.955921657269907	0.989787698735885
Merged-chr8-14842409-4	chr8	14841905	14842905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 14 of 15)	intron (NM_172910, intron 14 of 15)	-46131.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.59545557171184	3.64316236317732	3.636124648897	3.5679370655148	3.35874537302276	3.4910356813984	-0.55673196573259	0.327902583198022	0.72008757304674
Merged-chr2-150666024-3	chr2	150665540	150666540	+	826.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1454.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	4.56852396242541	4.6171912605738	4.49123580694864	4.20137436879335	4.31345935996686	4.43086931314255	-0.638630224988072	0.143723884629053	0.506028730682277
Merged-chr9-106298276-1	chr9	106297776	106298776	+	907.0	f1_balb.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	17215.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.04152162917141	3.08436826976837	2.96957240908662	3.23276860144096	2.96534735201031	3.59127106602053	1.03914317061577	0.137561572657636	0.495743572164087
Merged-chr16-3884580-4	chr16	3884082	3885082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029090)	promoter-TSS (NM_029090)	-37.0	NM_029090	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	6.99882836855827	7.21834453802389	7.39837646460459	7.11846082020422	7.09779363144901	7.50445648569668	0.0546042285411673	0.837603225818001	0.962141375366527
Merged-chr10-52381018-2	chr10	52380518	52381518	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	1106.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	3.71872375729372	3.45551668737293	3.56015354532959	3.79680828032635	3.40999635559556	3.57655730003779	0.0648166674047672	0.911915958267211	0.980211734893551
Merged-chr6-38921397-2	chr6	38920897	38921897	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	2411.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.92323669744177	3.73073021551266	3.81115266856133	4.12325056832023	4.02091216714778	3.93365480017527	0.631034209513711	0.214442873055685	0.607538973573768
Merged-chr19-4305230-2	chr19	4304730	4305730	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_130863, intron 1 of 21)	intron (NM_130863, intron 1 of 21)	992.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.83102445222309	6.09222089672741	6.43021339574932	6.15833152260293	6.13984365567912	6.10556274343311	0.0108923568576574	0.972273888971255	0.993868590220018
Merged-chr5-129940950-4	chr5	129940446	129941446	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-1163.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	7.24322707799346	7.40111875234433	6.92138724739501	7.24848612923816	7.25122008622965	6.95016273680876	-0.073666286601558	0.781550301106314	0.946246819163951
Merged-chr8-10836154-2	chr8	10835654	10836654	+	672.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	46300.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.24991746263437	3.62313184868653	3.52545031659583	3.61666964638991	3.26376226553471	3.41847835761331	-1.39947954161848	0.0303995999456179	0.210667936393352
Merged-chr10-100016623-3	chr10	100016123	100017123	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	CpG	802.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.7285631072704	4.58376536022642	4.43160174139913	4.36771321727011	4.51305095043194	4.62464618257308	-0.227391129612324	0.598247116652117	0.880699693383778
Merged-chr13-51848080-4	chr13	51847580	51848580	+	972.970215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011817, exon 4 of 4)	3' UTR (NM_011817, exon 4 of 4)	1405.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	7.49178728607093	7.65457281761682	7.48640803915998	7.67833183134687	7.54018007407902	7.7559017367432	0.155616648135826	0.492834531635764	0.831208279358962
Merged-chr5-64229163-4	chr5	64228656	64229656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MLT1F2|LTR|ERVL-MaLR	-1201.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.29548909869837	6.25602908877993	6.28543747063226	6.30141557856774	6.40873515372064	6.20141841183189	0.059494234708934	0.82813566155103	0.959633697141491
Merged-chr6-3386807-4	chr6	3386295	3387295	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	12776.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	4.37314396700854	4.4659485792526	4.54483031519613	4.78333127856659	5.02584516245691	5.14977361782178	1.24287508094131	0.00255429139205508	0.0373134617538833
Merged-chr12-80435191-4	chr12	80434706	80435706	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	CpG	1395.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	7.02568292110543	6.97913177517461	7.0747257556326	7.14566964388615	6.99027727883362	6.98703731025199	0.0289907636470661	0.903685727641949	0.977858102400597
Merged-chr10-59263181-4	chr10	59262685	59263685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41263.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.74333324342424	6.53269154771333	6.79912911803445	6.95632288468369	7.11616854788665	6.91588474230266	0.485739177896375	0.0574940349578385	0.309501433704588
Merged-chr17-21845827-4	chr17	21845311	21846311	+	864.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029281)	promoter-TSS (NM_029281)	-52.0	NM_029281	75424.0	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding	3.01595400599933	3.00977010359954	2.74775826846412	2.80218529439251	2.65459887183612	3.00694086118028	-0.548395549345511	0.462045421451775	0.815107818354545
Merged-chr10-5805604-4	chr10	5805135	5806135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-170.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	4.95996533748789	5.08802307329912	5.41661417495943	5.02254128590654	5.23353847553824	5.24682624048764	0.0301391511296124	0.936456503057471	0.986037792257163
Merged-chr2-148732468-4	chr2	148731988	148732988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019632)	promoter-TSS (NM_019632)	-68.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	4.6530225590807	4.92696367374372	4.81417671875453	4.46115260054236	4.51055188341612	4.52309669013287	-0.729979428328701	0.0786064634043887	0.370338857486117
Merged-chr17-71247530-1	chr17	71247030	71248030	+	921.0	f1_c57bl6.idr	3' UTR (NM_001164885, exon 20 of 20)	3' UTR (NM_001164885, exon 20 of 20)	42876.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	2.82060670688116	2.73912616525863	3.00826333555276	2.60497423360666	2.37509206557255	2.60113907642298	-1.96121992789744	0.0180566923629396	0.151137839064026
Merged-chr7-30280469-4	chr7	30279986	30280986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-65.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	8.30413573742255	8.34281358552841	8.17579165187453	7.89545147608053	8.19612571364595	7.65567231394777	-0.469403716204191	0.0533087145338654	0.295991930878587
Merged-chr4-57957587-6	chr4	57957142	57958142	+	915.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1231.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	7.74146543674254	8.08771380236263	7.88774906521783	7.75213184697341	8.04252714338895	7.95174450527499	0.0107405303848416	0.963474718200599	0.991116725160803
Merged-chr18-5986608-4	chr18	5986106	5987106	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	149492.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.41696528190067	4.27182715749926	4.44122064801569	4.17322104941876	3.82908627147525	3.95650475666022	-1.08799391071351	0.0262054410684328	0.192233602207563
Merged-chr3-146811325-3	chr3	146810795	146811795	+	853.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	1651.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	2.9813070519759	2.95803672742367	3.04686421641898	2.90189822773386	2.871825474	2.88035070396908	-0.529358654923356	0.437627640533816	0.800064171761167
Merged-chr2-25224839-4	chr2	25224335	25225335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146116)	promoter-TSS (NM_146116)	-133.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	6.29188746880827	6.18356202662163	5.98666315948758	6.13165165383452	6.35931388784412	6.60997195280714	0.344079386738754	0.253803586065254	0.651117231535132
Merged-chr15-99002321-2	chr15	99001821	99002821	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D-int|LTR|ERVL-MaLR	16356.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	3.98972194357768	3.71362325637544	3.82965320897628	4.30497960820174	4.08720618606749	4.24053931359706	1.06225219547514	0.0358072181766356	0.23255128083371
Merged-chr15-100674982-2	chr15	100674425	100675425	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 7 of 7)	intron (NM_033612, intron 7 of 7)	-5425.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.87790363237534	5.55189555973188	5.86426400943026	6.0123319325732	6.08663481359579	6.24850709761254	0.607818444578874	0.0497377808271961	0.283678200498275
Merged-chr9-77858649-4	chr9	77858150	77859150	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-58715.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	2.94447910147473	2.93251817517361	3.14277741189504	3.15901143829751	3.18392730381754	2.97644193373916	0.495894018973371	0.459852502244826	0.81399380957703
Merged-chr11-93994734-2	chr11	93994234	93995234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1357.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	7.89055262992463	7.83417360607193	7.74029254823562	7.58588197258456	7.91322616652586	7.24077896377784	-0.291663298573814	0.269862186756201	0.666905044122659
Merged-chr17-84719304-1	chr17	84718804	84719804	+	570.75	f0_balb.idr	intron (NM_028233, intron 30 of 37)	intron (NM_028233, intron 30 of 37)	36183.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	3.10679079782733	2.99667078964327	3.2367263903643	2.88756791112809	3.20000942902454	3.19703075714701	-0.0382932111708078	0.954867096873088	0.989683851514547
Merged-chr2-5951048-4	chr2	5950547	5951547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-422.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.78337536016237	6.54305239269156	6.55307033618443	6.97444071409679	7.13782428751932	6.55798586383248	0.452387588472768	0.114205554750514	0.451354412448026
Merged-chr19-37146348-4	chr19	37145807	37146807	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	B1F1|SINE|Alu	-27536.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	5.72138779681971	5.52047955056847	5.50822068402353	6.03552826546791	6.07605090281374	5.7974922582795	0.70440160369969	0.0254899575948875	0.189279578594091
Merged-chr10-84060755-3	chr10	84060256	84061256	+	950.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 2 of 4)	intron (NR_152790, intron 2 of 4)	39941.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	2.90420189031645	2.82801876649851	2.85184436836307	3.08923274625416	2.85529334194565	2.9868119631129	0.559506771853098	0.419898106474116	0.789348043413415
Merged-chr3-9000540-4	chr3	9000038	9001038	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	RMER6A|LTR|ERVK	3666.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.42669178156155	4.37592907273039	4.59825976930172	4.25730591469126	4.19542876634961	4.66326638846248	-0.228164878732978	0.6217935078533	0.8908398051148
Merged-chr5-147063944-1	chr5	147063444	147064444	+	1000.0	f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	12628.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.48737099729288	7.79928319251846	7.2651464522949	4.94339345236759	5.34777994315695	5.09545477439363	-4.22473422954147	8.48175744314824e-12	1.38654238375143e-09
Merged-chr7-43608192-4	chr7	43607700	43608700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1031.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	4.66080328941957	4.34586107860853	4.82971536703081	4.92643937158587	4.87564151156726	4.74431751003247	0.551413399667415	0.191423066941321	0.578049856489462
Merged-chr5-64204188-4	chr5	64203751	64204751	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-26106.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.0220742193297	6.21208277048901	6.31670937612141	6.49676290200052	6.45038426391675	6.14926500816222	0.331769356480121	0.253755379843724	0.651117231535132
Merged-chr6-122633017-2	chr6	122632517	122633517	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6593.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.76235963702688	6.75551034381106	6.69387592970684	6.43816981528334	6.56155955087328	6.46081321077269	-0.393765548818793	0.12432528055334	0.47180780554056
Merged-chr10-29361367-4	chr10	29360863	29361863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110198, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	1079.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	8.28952995689381	8.46733986135828	8.18576256907779	8.17991634788961	7.9806443077158	8.0468849630364	-0.355125614031851	0.103063596135969	0.427999556317301
Merged-chr19-11858142-5	chr19	11857646	11858646	+	881.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	4.30087353980973	4.2786928710886	4.42868486352269	3.94973289703862	3.59266550095984	3.74043548604036	-1.72732652754343	0.000979044331275758	0.0177200756924944
Merged-chr3-9609151-3	chr3	9608660	9609660	+	764.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 1 of 8)	CpG	925.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.25073649037338	3.11033686214989	3.28031726095041	3.55494711133024	3.42003933082706	3.17257359531946	0.734699004157173	0.245672175404287	0.642745892687709
Merged-chr12-73716925-2	chr12	73716425	73717425	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	(TCTG)n|Simple_repeat|Simple_repeat	132129.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.41852346964311	3.65518895133536	3.39978072981628	3.53169270924485	3.3390916628492	3.3555767799373	-0.336442768958097	0.573981527214954	0.870450078670662
Merged-chr6-140610330-4	chr6	140609834	140610834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12329.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	7.10704611894981	6.81956988437272	6.82163003740821	7.25537022259998	7.62240809814073	7.01373725775645	0.610977076641853	0.0297236260971432	0.207626215605364
Merged-chr4-33271828-4	chr4	33271246	33272246	+	729.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-22959.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.9867883010224	5.23470570128397	5.20704535420014	5.03901152806719	5.27620203663116	5.13942897539479	0.0321630191113411	0.930033540212981	0.984369787114949
Merged-chr18-82915601-2	chr18	82915101	82916101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	969.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.2364522030062	5.98816852258746	6.16047806474445	6.38359553222231	6.05466963313232	5.75933087078632	-0.0536711466827928	0.867509475488246	0.96935413537256
Merged-chr11-77491671-2	chr11	77491171	77492171	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1741.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	2.97650319255462	2.78124266317151	2.95013238488621	2.75977522873875	2.61274018625932	2.84394017041378	-0.870253513469483	0.235687180895318	0.631942092222397
Merged-chr2-156316606-1	chr2	156316106	156317106	+	669.0	f1_balb.idr	intron (NM_027585, intron 1 of 12)	intron (NM_027585, intron 1 of 12)	-3902.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	3.30723640112292	3.29505934329567	3.74085077424485	3.66456381125863	3.8911056797447	4.20917269737697	1.63998881244881	0.00745984672697105	0.0818242718768531
Merged-chr6-116669710-3	chr6	116669226	116670226	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	B4A|SINE|B4	4110.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.30327634004377	6.82265918400841	7.35223520991156	7.40690839076405	7.69047478187041	7.39880304600081	0.495607587617453	0.0678218925388081	0.340801016629576
Merged-chr16-91838005-2	chr16	91837505	91838505	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	intron (NM_001110275, intron 17 of 28)	93625.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.93670933781641	4.78567274219609	5.225174610453	4.91945365241962	4.99810189117188	5.22768846828617	0.138821742917339	0.723592695268675	0.929080851011554
Merged-chr5-137786304-4	chr5	137785787	137786787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144913, exon 1 of 4)	5' UTR (NM_144913, exon 1 of 4)	414.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	8.32541833304767	8.12284835578507	8.19613315456516	8.25273313387008	8.18664891098903	8.14535201703343	-0.0303837476900527	0.884330312201056	0.973466734537782
Merged-chr10-19915489-4	chr10	19914996	19915996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7822.0	NM_001161825	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	2.91106844553613	2.62984553829827	2.85228824295215	2.66578206303632	2.55389165232927	2.61425392525476	-1.0548819157816	0.169038512423541	1
Merged-chr6-53571939-4	chr6	53571444	53572444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-1430.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.92610339268841	6.79602031059695	6.88519194392709	6.86138973233837	6.94395947193303	7.08981452101638	0.145834987264667	0.555003823717191	0.863046555978621
Merged-chr11-3409234-4	chr11	3408733	3409733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010718)	promoter-TSS (NM_010718)	5.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	3.97291899434572	4.35353551929464	4.02324014577258	3.93517181818378	4.13301972292505	4.04333643454799	-0.262814279605231	0.602528048317917	0.882349532183277
Merged-chr6-134266399-3	chr6	134265873	134266873	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007961, exon 8 of 8)	exon (NM_007961, exon 8 of 8)	-129956.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.31280170534467	3.06390804321227	3.16497706355545	2.86289155720806	2.73371733066919	3.34526379119851	-0.797527158708078	0.286780539307481	0.68405100087997
Merged-chr5-3370159-3	chr5	3369639	3370639	+	729.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	RLTR11D|LTR|ERVK	26246.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.02516270277863	4.23031471802818	4.15952390494625	4.2192195592894	4.10811070082116	4.48240707122105	0.351588760010069	0.463720330062198	0.816038286358001
Merged-chr5-120888183-2	chr5	120887683	120888683	+	729.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011852)	promoter-TSS (NM_011852)	-570.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	4.52853542886097	4.6346235005189	4.79237402266538	5.00377739719992	4.71729689627374	5.06550466272541	0.638333924988023	0.118572973040358	0.460027973177699
Merged-chr18-77767814-4	chr18	77767292	77768292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146089)	promoter-TSS (NM_146089)	7.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	4.91151106107294	5.18273516383555	5.02850350152051	5.25261311983973	5.15639842364713	4.8670396051561	0.131754140907919	0.730258113750665	0.930837449595198
Merged-chr2-83754459-3	chr2	83753950	83754950	+	714.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 3 of 29)	MTD|LTR|ERVL-MaLR	30053.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.41621224419037	4.6199783823718	4.56268623220885	4.68080478747613	4.18812902009845	4.81713674710049	0.105988668955016	0.82040879647377	0.957629072297684
Merged-chr2-5613804-4	chr2	5613292	5614292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	62254.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.35078840422651	5.3407967433853	5.52954819516722	4.84304252865454	5.0137934124553	4.96910861244755	-0.943089198039957	0.00931433227955375	0.0957831975897678
Merged-chr8-83104218-4	chr8	83103758	83104758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-61094.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.80280280047351	7.01887103528379	6.5269601225952	6.44420537478357	6.5947130601679	6.76895275559537	-0.321112353763557	0.255445573835894	0.652537847534371
Merged-chr10-75667593-10	chr10	75667141	75668141	+	999.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	CpG	-23633.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	6.8814423779562	7.0305195123204	7.22061906571939	7.05079796061334	7.20547221497486	6.88913878915646	0.0277627455118092	0.914191912845762	0.98090343762099
Merged-chr7-18957547-1	chr7	18957047	18958047	+	543.0	f1_c57bl6.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29977.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	3.60257421360232	3.51136014256748	3.51134037558519	3.51124459217809	3.36456658800551	3.63472617778439	-0.158300042016099	0.783199966220125	0.946983650118234
Merged-chr10-7213400-2	chr10	7212900	7213900	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	5.8412128504145	5.76214029410481	5.5923452957656	5.60738495866796	5.49097196002437	5.27939713040711	-0.500328631654732	0.131220288722873	0.48419413676509
Merged-chr11-75572314-2	chr11	75571814	75572814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 13 of 13)	intron (NM_001199284, intron 13 of 13)	-15765.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	6.09194357201717	5.63266363499774	6.00520243074506	5.86834722007051	6.15021249060899	6.19289733292651	0.269783023050746	0.402962058548555	0.778365878954155
Merged-chr15-98894135-3	chr15	98893654	98894654	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007857, exon 3 of 3)	exon (NM_007857, exon 3 of 3)	4386.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	3.6967396163421	3.62273360692199	3.40940319991499	3.34717251302882	3.45623844266662	3.24014086891307	-0.855808902282516	0.161413700587773	0.534308437701691
Merged-chr12-17693135-4	chr12	17692639	17693639	+	823.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	2330.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.02038900776331	5.00131047401639	5.22260045968733	5.74476061963195	5.2955425623217	5.46989051976747	0.872825878516856	0.0166652655736607	0.143104583885775
Merged-chr8-70756830-2	chr8	70756330	70757330	+	792.229126	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166399, intron 3 of 4)	intron (NM_001166399, intron 3 of 4)	2151.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	3.40854759490029	2.99167285741127	3.40405466121512	3.21813911838002	2.99532833024837	3.07795279248365	-0.764293797377184	0.261079142333698	0.658630473017568
Merged-chr4-141861549-1	chr4	141861049	141862049	+	588.0	f1_balb.idr	intron (NM_025994, intron 2 of 3)	intron (NM_025994, intron 2 of 3)	13371.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	2.62303102742036	2.55260261756723	2.76071880519362	2.73690466156945	2.78800900770411	2.95123302932309	0.974860182761734	0.190268646668838	0.576501112519869
Merged-chr16-91852439-3	chr16	91851908	91852908	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79222.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.71888968763763	7.62885937323651	7.59822603332347	7.35914792994506	7.39464164356518	7.33659059844057	-0.419891258708176	0.0578903296668101	0.3109465618747
Merged-chr12-113125849-2	chr12	113125349	113126349	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-14387.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	7.27938743933216	7.04033095270555	7.06231540963974	6.96395928565827	6.88561034374407	6.97299283828547	-0.298283367569871	0.222679403734919	0.617620026273531
Merged-chr8-120323709-1	chr8	120323209	120324209	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	-95479.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	4.15221357917245	4.10811504171025	4.13547416444824	4.14082894488439	3.72107348570406	3.96339654232158	-0.543011373742093	0.285800529355897	0.683251812057186
Merged-chr8-34110150-1	chr8	34109650	34110650	+	545.0	f1_balb.idr	Intergenic	L1_Rod|LINE|L1	-1438.0	NM_011722	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	2.88310972580961	2.67868939498655	2.69394820693026	2.7979537402802	2.69037866745087	3.12253148257211	0.599465011575209	0.426588205681871	0.793840707522572
Merged-chr18-32406838-2	chr18	32406338	32407338	+	900.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-28554.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.42480330202581	5.60887415436981	5.95085040038691	6.0042010164227	5.72245429199421	6.23407970489975	0.580990397534928	0.0947626081975316	0.410356861977632
Merged-chr2-52979856-3	chr2	52979368	52980368	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B1_Mur2|SINE|Alu	122000.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.35107721860673	4.31079823894951	4.18502248459018	4.12577501593297	4.01491898455465	3.66288953940109	-0.937674896425911	0.0732932024239372	0.355717421657819
Merged-chr1-33757084-2	chr1	33756619	33757619	+	604.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145392, intron 1 of 2)	intron (NM_145392, intron 1 of 2)	631.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	4.3832240488829	4.07822786337056	4.12196733137066	4.52560265155388	4.21941236685163	3.98482785740297	0.169230307772336	0.736120133417379	0.933046642264646
Merged-chr13-76018225-2	chr13	76017725	76018725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	337.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	6.97728160359528	7.25316954964041	6.99076763957872	7.55784955518771	7.72470394436696	7.41709142338702	0.730439176018624	0.00315762440645068	0.0438191480340141
Merged-chr13-23412544-3	chr13	23412058	23413058	+	710.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11308.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	2.56181347906558	2.66246739505527	2.75980052256553	2.36838896751454	2.35238713056765	2.46178650834188	-1.71142008371892	0.0395160905347941	1
Merged-chr6-48841413-4	chr6	48840919	48841919	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164209)	promoter-TSS (NM_001164209)	-45.0	NM_001164208	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	4.73562118441138	4.71632569253236	4.83195157963605	5.11343973271218	4.94826508828219	5.58856575229081	1.01666451667437	0.0132076560591407	0.122068493321002
Merged-chr7-141453606-2	chr7	141453106	141454106	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1582.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	3.43346877591636	3.20127730448576	3.4960519739987	3.18446838264769	3.61006997643119	3.6674830636364	0.461512077025328	0.466861826710648	0.817669049589332
Merged-chr6-38952663-4	chr6	38952165	38953165	+	897.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	33679.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.05575290762184	4.70562771154022	4.58527447385436	4.95281078180052	5.28535956714358	4.56232500875237	0.383594486017303	0.399607253954573	0.775992914351609
Merged-chr9-108263914-4	chr9	108263427	108264427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276481)	promoter-TSS (NM_001276481)	31.0	NM_001276486	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	6.37684884961907	6.28906682651474	5.96402834690332	5.94166380047819	5.80542206329537	5.92801893041506	-0.591526724887367	0.0501837908931322	0.285159854855906
Merged-chr3-19161838-2	chr3	19161338	19162338	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357689, intron 1 of 6)	intron (NM_001357689, intron 1 of 6)	1257.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	3.67684678021693	3.21311580081575	3.64863356900582	4.19428140669869	3.77827681012297	3.72127524402542	1.28611185484176	0.0374201005618886	0.238996908777528
Merged-chr13-64248596-4	chr13	64248093	64249093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045798)	promoter-TSS (NR_045798)	-55.0	NM_001122989	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	5.63399199935938	5.67011576547785	5.60978204368183	5.71504412793932	5.4235107523127	5.40721761937841	-0.216459886056573	0.510003161281205	0.840623252721494
Merged-chr12-36157918-4	chr12	36157427	36158427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 1 of 9)	intron (NM_146033, intron 1 of 9)	803.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	6.25844884758678	6.69331835404167	6.32951278661747	6.40177636219246	6.31573518215695	6.3699791595028	-0.143292884527955	0.620217856293515	0.890026802452616
Merged-chr2-126933178-4	chr2	126932674	126933674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	61.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	8.20833373680254	8.28097041021168	8.00329680798538	8.28065262639877	8.5300387710146	8.20036003866757	0.248232138412506	0.272637211934964	0.669903488087786
Merged-chr11-20532360-10	chr11	20531887	20532887	+	998.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10866.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	7.95899409283086	7.48476596578534	7.52743498587325	7.62698971820875	7.44972102074574	7.4060160529389	-0.263771159625604	0.301928421638535	0.698633484641245
Merged-chr7-44836103-4	chr7	44835579	44836579	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-209.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	5.57721869776499	5.01616437840195	5.50509866572343	5.67567222208123	5.35611792439279	5.42226176335522	0.203410678440641	0.588270118428732	0.876276047515538
Merged-chr9-90013473-4	chr9	90012976	90013976	+	822.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-40791.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.04049148538483	3.73553370898089	3.73446297360138	3.84821144302974	3.82456755061065	4.18846565150427	0.32667447446658	0.544956334556647	0.857940451550328
Merged-chr2-14244839-4	chr2	14244332	14245332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 3 of 29)	intron (NM_008625, intron 3 of 29)	15418.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.56770033884081	5.6313556731925	5.8078299852552	5.75888607356068	5.4637631836389	5.79631142792573	0.0103618460891013	0.974834308003168	0.994382735882691
Merged-chr11-118202680-6	chr11	118202229	118203229	+	889.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10013.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.53335205740836	6.30773043699563	6.57344157398414	6.23439465776723	6.23625015403483	5.99724275720566	-0.499728348512425	0.0802024461585283	0.374704387420484
Merged-chr5-31871000-4	chr5	31870516	31871516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	MTEa|LTR|ERVL-MaLR	172966.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.32944608396786	5.55711580816455	5.74745485091619	5.35191863692837	5.65995253714133	5.36774461000517	-0.130907911019006	0.710304006425262	0.924293540432205
Merged-chr13-34332918-4	chr13	34332440	34333440	+	943.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	12242.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.19630120100011	4.03751363642425	3.69651350533518	3.88133145278732	3.64583199838465	3.59408514140029	-0.90275111841905	0.108201342777552	0.439398218728357
Merged-chr6-115992052-3	chr6	115991463	115992463	+	746.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	3042.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.06527450758756	3.41968565995268	3.31015881204526	3.46425326532969	3.18378763959871	3.14559303176293	-0.00312667673905584	0.996192782007878	0.998961028701257
Merged-chr1-74371560-1	chr1	74371060	74372060	+	545.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-3643.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	3.22654344759083	3.23074580772035	3.16689981832712	3.56697541115185	3.1383125178404	3.5219966380405	0.822960914290296	0.199758919199804	0.588352275982348
Merged-chr11-29875009-4	chr11	29874528	29875528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	RMER16_Mm|LTR|ERVK	-49360.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.59521765823544	5.89313088302836	5.75694026432005	5.42441471639676	5.3342586308067	5.40200810018175	-0.698992957559184	0.0333471523105326	0.222871473851791
Merged-chr5-124484269-3	chr5	124483825	124484825	+	731.761902	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	intron (NM_029532, intron 1 of 1)	1170.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	6.32640367505433	6.05682551309771	6.03464176676504	6.32686570394146	6.34973137150769	6.14140945258478	0.21838099802446	0.452182912489979	0.809286173636239
Merged-chr2-80080621-4	chr2	80080134	80081134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-41732.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	7.42617271444824	7.81028361502321	7.15575339378693	7.39411032249715	7.79943760001547	7.48200796945444	0.107598301793583	0.702571709302902	0.921908665861083
Merged-chr19-32379782-4	chr19	32379348	32380348	+	859.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	8201.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.50646752669702	3.57078425257123	3.7231191450746	3.11402080899818	2.88436097088131	3.26958172395287	-2.21938490479661	0.00128557599936341	0.0219066573325888
Merged-chr2-60855716-2	chr2	60855216	60856216	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	ID4|SINE|ID	25722.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.83122857923391	6.8641231437486	7.04000539593843	7.00516365908308	7.30085570388854	7.00517468630591	0.320597816009246	0.207722382820907	0.598647964455598
Merged-chr3-96696400-4	chr3	96695916	96696916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146135)	promoter-TSS (NM_146135)	41.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	4.75280574505149	4.67701182408281	5.23623544028332	4.99730030105396	4.89373184712206	5.32725360758058	0.381772208304307	0.364676645685752	0.750028369485675
Merged-chr4-155249996-4	chr4	155249491	155250491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	25.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	5.88772065312022	6.30261880967626	6.5040381781343	6.31709793900159	6.32840559121505	6.4607031583484	0.19743690017686	0.522149902523877	0.847473464378842
Merged-chr13-67772495-3	chr13	67771993	67772993	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7200.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	3.53301551712224	3.34672951233513	3.30628358983017	4.20979486888223	4.33344812909683	3.81319653542134	2.50988789268573	4.52471512286056e-05	0.00145139744002691
Merged-chr7-99536260-5	chr7	99535746	99536746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	760.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	7.22336642261816	7.32706680387107	6.92965998951381	6.79318574426936	6.86617898353665	6.62476145851553	-0.627429184416947	0.0167693557913293	0.143676994079316
Merged-chr2-102967631-4	chr2	102967124	102968124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65959.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.63665807121852	7.63715733287485	7.49315877118001	7.27217586790089	7.56057666499783	7.41457489693509	-0.246724034518159	0.289492615585041	0.687171265978209
Merged-chr1-65112245-4	chr1	65111758	65112758	+	811.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-8895.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	7.79135083609811	7.98375606648413	7.48066997146208	7.94486469458073	8.27237785998645	7.53757704645248	0.268173841054004	0.347321126130134	0.735477309583349
Merged-chr14-60757456-4	chr14	60756944	60757944	+	982.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10690.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	3.86460797838605	3.74394170252941	3.66613126941545	3.61821824402734	3.44879193871909	4.02679150170322	-0.172310636543299	0.766831405453761	0.942573703853445
Merged-chr11-72752211-4	chr11	72751708	72752708	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009671, exon 15 of 25)	exon (NM_009671, exon 15 of 25)	43631.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	4.48675408978839	4.36061506519566	4.28339886830593	4.54678743987355	4.61285196608162	4.44313640713107	0.397186377674446	0.360515099975099	0.746695386038931
Merged-chr11-100546445-2	chr11	100545945	100546945	+	648.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	B3|SINE|B2	813.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	6.8647297102038	6.65261003195516	6.47943789195554	7.13537585775403	7.24580230808161	6.75282207487558	0.598004137415565	0.0337220757094236	0.224493677544581
Merged-chr6-136497985-4	chr6	136497502	136498502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20849.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	5.93417282867449	6.02998607967013	5.69421660526815	6.44204868039312	6.59460666596673	6.26923195434846	0.91568913108386	0.00224420980540737	0.0337068970195553
Merged-chr2-30265861-3	chr2	30265364	30266364	+	907.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252568)	promoter-TSS (NM_001252568)	-339.0	NM_001252568	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	6.67766118426178	6.69545776863366	6.63705950178389	6.50584993602263	6.52310036089114	6.24538615181205	-0.369450433002516	0.165700582680509	0.540863657924297
Merged-chr8-61665215-4	chr8	61664783	61665783	+	879.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-74114.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.73868231975706	5.25367782334131	4.76062664843831	4.37929600319656	4.58817061707731	4.70864196362439	-0.891220368019247	0.0427973039847983	0.25938364556538
Merged-chr17-71263323-4	chr17	71262862	71263862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	47649.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.48977802306994	6.6933473887902	6.05396942915696	5.74695277463813	5.54100263537946	5.17813571042086	-1.61255434633272	7.69865567035218e-06	0.000319177748389967
Merged-chr9-113795471-3	chr9	113794973	113795973	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	2143.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.24729083257232	4.05142259930437	3.69627400900872	3.99959039685033	3.69491879316673	3.82529660271062	-0.554868873473432	0.314385125365476	0.708710692372488
Merged-chr5-123749563-4	chr5	123749064	123750064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042421)	promoter-TSS (NM_001042421)	-150.0	NM_001359865	208606.0	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	6.63486588096526	6.54277151878684	6.72306468053252	6.60444938715314	6.67428362990689	6.47938747021147	-0.0564250140823516	0.828683482050596	0.9598352930318
Merged-chr8-34148296-2	chr8	34147811	34148811	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1572.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	4.45127065044738	4.14098491495278	4.64233466620425	5.04493921117087	4.87383879623229	5.30563382661597	1.53900290723732	0.00049552369632736	0.0104383634744321
Merged-chr10-60388541-4	chr10	60388051	60389051	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-11175.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.5599813289164	3.51425811025651	3.68798560788392	3.27473424008687	3.24796466358998	3.27339854845486	-1.24983235517877	0.037931795261868	0.240933497721337
Merged-chr12-38779512-4	chr12	38779001	38780001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-581.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	7.60822740913437	8.01228978827172	7.63047980474053	7.71848872753977	8.11156346195913	7.72414938967019	0.146934613068736	0.569818073826882	0.868897023832802
Merged-chr2-132257357-2	chr2	132256857	132257857	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4177.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	2.14062612866891	2.23262051085626	2.28815790840591	2.40891949073146	2.34486440013884	2.61565096620616	1.60706814345161	0.0655782086835533	1
Merged-chr2-36252719-3	chr2	36252223	36253223	+	636.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008969)	TTS (NM_008969)	22297.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.62221886669225	3.77557374124577	4.07166224574886	4.00780729815316	3.81620159007617	4.00275501842304	0.356453614485145	0.505383520156256	0.838088965743817
Merged-chr9-95688285-3	chr9	95687778	95688778	+	825.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	50650.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.01216689352348	2.99121981552516	3.11177212464472	3.04974561922757	3.00392233082729	2.9460519160143	-0.156728410799465	0.813612869854733	0.955940138311315
Merged-chr11-107313256-2	chr11	107312756	107313756	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-123875.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	3.33272430735299	3.24586945955748	3.12476944525351	3.45818477548376	2.99299190441599	3.37354977117751	0.190077885151754	0.775561749853055	0.944682505926692
Merged-chr19-6058913-2	chr19	6058418	6059418	+	791.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007990, intron 3 of 4)	intron (NM_007990, intron 3 of 4)	951.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	6.03722564868631	6.26648075856568	6.19139792983896	6.07434261849922	6.40346888198524	6.5947298685157	0.335715194612348	0.265853079224718	0.663674403642054
Merged-chr2-23156014-4	chr2	23155508	23156508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	16.0	NM_025979	67121.0	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	7.80832561052942	8.37688589120833	8.00902230721451	8.0418949884448	8.26340918756544	7.85263968939017	-0.0310720192670553	0.905459684789893	0.978359254259264
Merged-chr4-142024824-2	chr4	142024324	142025324	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	6926.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	3.84969327104446	3.92089264875807	3.78618358649355	4.09410568830246	3.90777084721956	4.23842422656366	0.665911608013407	0.192174899901004	0.57920205203809
Merged-chr5-140611866-3	chr5	140611368	140612368	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 2 of 8)	exon (NM_008494, exon 2 of 8)	4527.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.07386577478783	5.05634194727622	5.4517029903167	5.22515814615007	4.96536827216985	4.98056387579425	-0.275416410682367	0.471404449451187	0.81999367601546
Merged-chr17-94834955-4	chr17	94834432	94835432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-133.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	5.43212861647127	5.73248371478298	6.06321935053989	5.95383733069869	5.87225698953093	5.97255945389356	0.312903976436209	0.350380443952634	0.738366841617277
Merged-chr8-105499341-3	chr8	105498847	105499847	+	876.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2445.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	5.62043901193384	5.81899303294972	5.19026796991629	5.82904867384424	5.92305179553203	5.36472592203093	0.286671510192049	0.450270595961662	0.808244958990181
Merged-chr3-20305670-2	chr3	20305170	20306170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-29937.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	4.50508079828075	4.37700035644241	4.79388695680631	4.2450803464652	4.54835160245887	4.25118773276999	-0.488896537914496	0.293938846755065	0.690457148203017
Merged-chr1-182490605-2	chr1	182490105	182491105	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 5 of 20)	intron (NM_009794, intron 5 of 20)	27005.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.97833511850028	4.03510793136109	4.09637042926605	4.11575413174671	4.08138103716544	3.97080086121517	0.078590818203065	0.870918212925063	0.970222087171093
Merged-chr17-80728201-4	chr17	80727704	80728704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-179.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	6.7996933236321	6.35213447004044	6.47325742316073	6.64335361185115	6.1084389840719	6.4601493181256	-0.227890903841208	0.463920237211312	0.816038286358001
Merged-chr15-90634033-2	chr15	90633536	90634536	+	731.75	f0_balb.idr|f1_balb.idr	intron (NM_001357979, intron 3 of 18)	MTA_Mm|LTR|ERVL-MaLR	45352.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	2.70438957588943	2.56228835026516	3.01933970118597	2.35153745294842	2.42012263056821	2.43358835232578	-2.267595274836	0.0101003307485852	1
Merged-chr6-65153705-2	chr6	65153205	65154205	+	957.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-8975.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.14568434746615	3.34050179951321	3.55431816502036	3.08769733345143	2.91479946537513	3.42291204804366	-0.826516262679546	0.230996598578696	0.626779077951996
Merged-chr13-102693505-4	chr13	102692995	102693995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-52.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	8.28908388708632	7.90361965742778	7.96962870019814	8.26597592249627	8.58864886717556	7.87109550687239	0.303531784754927	0.264614908494314	0.662558796858873
Merged-chr3-103017592-4	chr3	103017143	103018143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2903.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	5.51216780964241	5.7489451126118	5.52689795109711	5.63440037350651	5.89746086034197	5.83101790307607	0.34501356510531	0.285385500141187	0.682917350182106
Merged-chr5-137828890-4	chr5	137828395	137829395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	7383.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	6.76514839281094	6.68101609514875	7.07919951926196	6.78771113657057	6.81691517133951	6.75315693081085	-0.085607978207478	0.744912549675436	0.936032341688524
Merged-chr2-117936747-3	chr2	117936229	117937229	+	758.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114801.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	3.42165882932142	3.54590295451287	3.39868582190161	3.32359698145159	3.04829913242354	3.52347359862204	-0.602426986350713	0.345491580997294	0.733882070166902
Merged-chr11-109471124-2	chr11	109470624	109471624	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	B1F|SINE|Alu	2105.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	5.9428927815787	5.8810446537066	5.57732685534457	6.0023020127585	6.20057951290591	5.51602350712261	0.236352484058072	0.501662693165415	0.835833270717604
Merged-chr5-139555944-4	chr5	139555403	139556403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12005.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	3.88905554311687	3.72075789281478	4.1369881396554	3.31459038265064	3.13315795240491	3.54521363172532	-2.21006777716109	0.000512608068881488	0.0106920861985154
Merged-chr2-128734845-2	chr2	128734345	128735345	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	35930.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.82846635177425	4.9954476580194	5.01057285550489	4.76568579305918	5.07973312367489	5.1730165654281	0.152267364314677	0.695433367008038	0.919289041383579
Merged-chr4-126437281-2	chr4	126436781	126437781	+	743.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-7739.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	5.52099887360415	5.45173599316047	5.49267001143085	5.43724821157003	5.44400733141242	5.71559533713695	0.0770146634764381	0.815917633119809	0.95655688968801
Merged-chr10-18995711-4	chr10	18995246	18996246	+	828.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16217.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.40679437954289	3.45277681375968	3.47331905315669	3.47508913321847	3.59873239686313	3.43279865182804	0.245441552976742	0.670535459043353	0.910029595108128
Merged-chr17-88551178-4	chr17	88550689	88551689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21065.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	7.502157041176	7.40071148782885	7.50351336627796	7.39185875324047	7.73545087111942	7.48995981570297	0.125183956072707	0.596702245266558	0.880046639147099
Merged-chr11-3196499-7	chr11	3195939	3196939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.22645897608445	6.76633960816232	7.00886930234103	6.74555360124904	6.32417626896774	7.42650448493434	0.327225460360588	0.579805473819849	0.872634190673987
Merged-chr11-53768445-2	chr11	53767945	53768945	+	709.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1569.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.14423854634959	3.66951889652049	3.90264677765817	4.15436565268967	3.99905424016968	4.46008661545346	0.829204809485517	0.122981746824989	0.469148413250216
Merged-chr2-117340887-2	chr2	117340387	117341387	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	1990.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.23586820602236	4.19405183031331	3.98170661291451	4.56169975369285	4.40920251009887	4.05403422028783	0.583610823086073	0.235909883291358	0.632261024837056
Merged-chr2-158411306-2	chr2	158410806	158411806	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	1453.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	2.73699738449888	2.69788431485382	2.90345599499537	2.98491473822615	2.76341990248502	2.91661695649607	0.56294174641917	0.432617358262003	0.797386699146392
Merged-chr3-95296721-2	chr3	95296221	95297221	+	927.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199475)	TTS (NM_199475)	10083.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	2.98646549750567	3.08790008298324	3.05211351006513	2.90763504729992	2.82671114036148	2.82101400952417	-0.934276033232375	0.177509232712941	0.558517567618611
Merged-chr2-120850570-4	chr2	120850058	120851058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038349)	promoter-TSS (NR_038349)	26.0	NM_080788	140810.0	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	5.14629057338759	5.11652077671669	5.37458200332964	5.00084011253901	4.62382970309043	4.9253085602096	-0.77156635427888	0.0480053851972582	0.277815557900505
Merged-chr9-40787043-1	chr9	40786543	40787543	+	678.0	f1_balb.idr	Intergenic	B3|SINE|B2	-14230.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.20607776201347	4.16778150797156	3.99739714040766	4.2869773500055	4.47674026511364	4.44177936608871	0.73045101976751	0.115476607089804	0.45366277255564
Merged-chr1-153803137-4	chr1	153802650	153803650	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40991.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	7.30560385124063	7.12165306979731	6.53964000268462	6.66774916389104	6.49678297678839	6.22605642974826	-0.867328231352732	0.00623558451492636	0.0717437107740587
Merged-chr17-23889265-1	chr17	23888765	23889765	+	850.3333130000001	f1_balb.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	8389.0	NM_019910	13184.0	Mm.371556	NM_019910	ENSMUSG00000096445	Dcpp1	BC005655|C86550|Dcpp|Dcpp-1|p20	demilune cell and parotid protein 1	protein-coding	1.9984686820657	2.11550872116532	2.09961701723117	2.38294877389774	2.34553737967843	2.87074696015628	3.78502956138881	0.00097500460427928	1
Merged-chr7-65475910-4	chr7	65475425	65476425	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-104681.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	4.04002583738384	4.12671700003098	4.51426671730734	4.38411079896162	3.945505966178	4.38193475436122	0.0330561020992951	0.948328412285124	0.988083630162243
Merged-chr15-73732915-8	chr15	73732453	73733453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	UCON5|Unknown|Unknown	8023.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	7.32866588556029	7.41140387730398	7.60510307027483	7.6816428390658	7.67708897626338	7.45542762380756	0.24296071816232	0.299670337029276	0.696379589028967
Merged-chr7-45136467-4	chr7	45135965	45136965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013520)	promoter-TSS (NM_013520)	-33.0	NR_102725	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	4.82004480209691	4.68845320437437	4.73779789906477	4.36068379135714	4.83607062348603	4.76525959301724	-0.174428797223999	0.68366177904208	0.915479407206029
Merged-chr7-102207180-2	chr7	102206719	102207719	+	686.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	intron (NM_001287166, intron 1 of 19)	2648.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	3.88894433440244	4.42431576319272	4.23565637262857	4.2589547608052	4.2600673774869	4.83955464230456	0.70052268497485	0.180803613884867	0.562887982344895
Merged-chr8-11168189-3	chr8	11167675	11168675	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-144630.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	2.27431765565821	2.2897564494783	2.3090470400545	1.9810215950123	1.86236264105194	2.12062993754824	-2.82337727259871	0.0112270268471412	1
Merged-chr15-8442239-2	chr15	8441739	8442739	+	693.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	2224.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.50562994822827	5.56544725486148	5.88130550602976	5.95414727515669	5.62211284124207	6.11383216431362	0.453358470696957	0.182732121894821	0.565548610698318
Merged-chr5-67836435-4	chr5	67835923	67836923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	11008.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.91933539994188	5.77750363641648	5.52678877203131	5.60702817695592	5.62544507049182	5.33804878398882	-0.411724867339627	0.221874901535027	0.616749074862247
Merged-chr17-35777229-4	chr17	35776677	35777677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045459, exon 2 of 3)	non-coding (NR_045459, exon 2 of 3)	4727.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.42798489246011	5.71461319025173	5.59540676341787	5.70354205794231	5.81093865553343	5.68526352006248	0.282210047591157	0.379571289520041	0.761960372847995
Merged-chr13-60702817-2	chr13	60702317	60703317	+	774.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	83547.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.27638956729662	6.52680670728004	6.66871633006903	5.75403375192185	6.08692614144126	6.00471050117989	-0.895425586319549	0.0032393629613077	0.0446777578790802
Merged-chr3-28025714-2	chr3	28025214	28026214	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	B4A|SINE|B4	41543.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.87117259439657	3.96458307234488	4.01852218789036	4.02324848996388	3.78644614282309	4.34568558002131	0.325835987872276	0.534814961600535	0.853176101630884
Merged-chr18-34779453-4	chr18	34778964	34779964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2456.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	4.63139895417767	4.59754033097819	4.56271488883322	5.08476625513842	4.88965118500248	5.17809890125018	1.01205610987711	0.0108542630572799	0.106454681809305
Merged-chr17-29264119-4	chr17	29263597	29264597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026845)	promoter-TSS (NM_026845)	-126.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	6.04452272331356	6.37828573521948	6.91610479863148	6.56606721031545	6.27993544132433	6.85674928125319	0.148727990020095	0.671694587470652	0.910577937637596
Merged-chr15-67907253-4	chr15	67906724	67907724	+	665.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	351632.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.26929129528464	4.32776959187931	4.36109756604895	4.57010834567932	4.38468484450384	4.29295552007395	0.276611894907077	0.534113881042811	0.852892987906084
Merged-chr2-68872626-2	chr2	68872126	68873126	+	607.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11185.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.02772653055594	3.59365390080054	4.04831203464673	4.32389251073703	3.89453871378695	3.9717003189161	0.515823564912571	0.34818385733825	0.736087868121677
Merged-chr19-40626870-2	chr19	40626370	40627370	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	14504.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.01290980603199	6.01150176547853	5.92050247047513	5.08409307161375	5.74333878914163	5.50865510548944	-0.905168236783131	0.0113526382316811	0.109994215414732
Merged-chr1-156593506-4	chr1	156593007	156594007	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	34720.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.06445660479939	2.89649890460218	3.04777925965769	2.86363713358929	3.06481175769787	3.11941954738584	0.074687533693589	0.912616882792035	0.9803740348902
Merged-chr4-126108860-2	chr4	126108360	126109360	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	MIRb|SINE|MIR	4903.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	4.04796237338317	3.63297019533295	3.93099193414559	3.71865206908977	3.753330196991	3.80191016412734	-0.39686470888318	0.46391791209269	0.816038286358001
Merged-chr6-28292863-4	chr6	28292372	28293372	+	968.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31271.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	5.46849030649246	5.57060984069255	5.57304574481117	6.11575351964487	5.97175542583732	6.01510542235577	0.896777378279838	0.00327330109121349	0.0449679758419796
Merged-chr13-112786387-4	chr13	112785891	112786891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-14386.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.9666465986847	5.56491191877865	5.36094453399047	6.2420389764333	6.30731875160544	5.87570147424097	0.864522779103805	0.0136497549124526	0.124634259365766
Merged-chr3-40745996-1	chr3	40745496	40746496	+	1000.0	f0_c57.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	383.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	6.52566486811678	6.54651187769997	6.09023927628928	6.46537769625443	6.55107299757292	6.12822374987061	-0.0174167054490271	0.954579582723014	0.989606357454991
Merged-chr8-123009075-4	chr8	123008590	123009590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	33194.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.97913500588886	6.08718354531258	5.94648793095464	5.92546049944376	5.85704800550741	6.28052578732809	0.0217584648845058	0.943662861794962	0.987453245208137
Merged-chr3-87885010-2	chr3	87884536	87885536	+	959.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033573, exon 1 of 7)	exon (NM_033573, exon 1 of 7)	526.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	6.59137357075141	6.9747505093485	6.56471886312121	6.86128216376366	6.58572161091053	6.87718084093953	0.0671104588236643	0.81182089433438	0.955319632415911
Merged-chr13-49195753-1	chr13	49195253	49196253	+	556.0	f0_balb.idr	3' UTR (NM_013610, exon 4 of 4)	3' UTR (NM_013610, exon 4 of 4)	8206.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	6.51592697180719	6.76413633532287	6.96491538030672	6.23585042358869	6.31890401734211	7.01039090627641	-0.307927992130098	0.355264481199105	0.742212688350285
Merged-chr14-45036785-4	chr14	45036298	45037298	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	48687.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	3.61099915605216	3.79842142412191	3.4639104966584	3.7022028364596	3.83051972955868	3.70563999995473	0.371021627869672	0.508319107803793	0.839818423824339
Merged-chr4-47319024-1	chr4	47318524	47319524	+	632.333313	f0_balb.idr	Intergenic	LTR16C|LTR|ERVL	-34198.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	5.11468182981021	4.94830661262877	5.35461023168324	5.08447318918926	5.1630667096828	5.20554171547631	0.0261454525462474	0.943632411312493	0.987453245208137
Merged-chr4-134551828-3	chr4	134551349	134552349	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 1 of 11)	intron (NM_029100, intron 1 of 11)	317.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	5.24838005816371	4.87264595645233	5.17447289965312	4.70914399759841	4.67411096562961	4.57170976656201	-1.00130907131029	0.0131178881222411	0.121495239857017
Merged-chr1-60015619-2	chr1	60015119	60016119	+	760.75	f0_balb.idr|f1_balb.idr	intron (NM_001357296, intron 4 of 10)	A-rich|Low_complexity|Low_complexity	27503.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	5.96073830680593	6.39187906431489	5.63393915486681	5.70534944813057	5.76684510227987	5.63894561001844	-0.599166942265475	0.0864865242097929	0.389540473446381
Merged-chr8-26907698-4	chr8	26907141	26908141	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69695.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.21778648980791	4.65221385859305	4.52542833532411	3.92289382603315	3.8125214859917	4.3491138621227	-1.21384455641944	0.0186711839346122	0.154540124622621
Merged-chr18-39137610-4	chr18	39137104	39138104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144459.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.80792885918602	6.96559176880892	6.51008120224709	6.7233547818503	7.07190347775486	6.37099992242675	-0.0219206668660072	0.943936037858243	0.987495247303971
Merged-chr9-50560708-4	chr9	50560179	50561179	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025687, intron 1 of 4)	intron (NM_025687, intron 1 of 4)	589.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	5.43590824541388	5.35716190673928	5.28925808854149	5.55833305508301	5.33418770824747	5.14968985687066	-0.00207897256335967	0.995277114738996	0.998961028701257
Merged-chr2-151039402-4	chr2	151038891	151039891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026086)	promoter-TSS (NM_026086)	-12.0	NM_026086	67311.0	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	6.68651090903771	7.06683767854073	6.78797279878591	6.76084301668834	6.42266127749059	6.24749645032143	-0.567723871291462	0.0535153413526721	0.296642763524958
Merged-chr2-160361319-2	chr2	160360819	160361819	+	927.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5746.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.92303708535876	5.84716781744241	5.96337598234398	5.8981235962094	6.08272719131451	5.97805235667651	0.147699814473397	0.616430397656502	0.888359083506792
Merged-chr18-61077359-3	chr18	61076867	61077867	+	873.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 15 of 22)	intron (NM_008809, intron 15 of 22)	-28205.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	2.56690276474271	2.31167246528665	2.46188311683276	2.85029802315948	2.78783194080608	2.73582102783853	2.04919257364669	0.0152426748377516	1
Merged-chr10-117873441-3	chr10	117872992	117873992	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27518.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.52053213423624	6.68059024556176	6.46217179017898	6.43317269644038	6.54858237165312	6.03082869320044	-0.308078245998972	0.295948493191792	0.692718239683474
Merged-chr5-136218156-4	chr5	136217655	136218655	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302938)	TTS (NM_001302938)	-19201.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	5.2725959452729	5.0328691718939	4.75645092900149	5.09396198630911	4.76569714336826	5.05230993975989	-0.163899252288214	0.68616979818725	0.916596830431285
Merged-chr4-22384086-4	chr4	22383583	22384583	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 3 of 8)	Lx7|LINE|L1	26540.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	3.80136108651044	3.6826408576121	3.75521718848248	3.69166318069063	3.70815592780713	4.01603070641624	0.189580237190013	0.724302035422464	0.929311721511015
Merged-chr7-83653390-3	chr7	83652903	83653903	+	742.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	2092.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.12505651044758	6.07295312581106	6.16216452618739	5.64653732579171	5.6573120808275	5.6244343186431	-0.840692103733342	0.00475225841964133	0.0591777788957671
Merged-chr15-41842133-4	chr15	41841586	41842586	+	673.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 12 of 17)	intron (NR_152565, intron 12 of 17)	11128.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.38141101355121	3.59317766211108	3.70537672398181	3.38019222922691	3.55223762114764	3.82166989639976	0.101381221997074	0.864320131569253	0.968269312109804
Merged-chr5-105056272-4	chr5	105055758	105056758	+	923.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-2697.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	4.39201073331398	4.49505521520767	4.31298843754391	4.52161836988413	4.65338090134812	4.6390673712683	0.493054376470335	0.248490783915962	0.645613599827621
Merged-chr8-71614442-1	chr8	71613942	71614942	+	919.0	f1_balb.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	3418.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	5.32794742099971	5.24072546445261	5.31675136836241	4.98535728266007	5.38389624658525	5.15401491519593	-0.19944005284812	0.583971079028316	0.874371294853541
Merged-chr12-85519748-4	chr12	85519253	85520253	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45863.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.22933119555498	4.28384218939831	4.39716315566449	3.88391610363797	3.75514203370818	3.81178475922725	-1.45352388751842	0.00363171895933689	0.048474185301332
Merged-chr11-77028788-3	chr11	77028284	77029284	+	872.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	30187.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	3.74361009459073	3.7891543531979	3.69026523801644	3.53390246517775	3.25778834837218	3.30878059359877	-1.37500006800827	0.0206545748592888	0.164808771086661
Merged-chr10-127266292-4	chr10	127265791	127266791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	29.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	7.43418696387806	7.73290647442175	7.44407380117786	7.54628773233604	7.56274047059319	7.50107134723244	-0.0165423601472676	0.943512861105151	0.987442772039771
Merged-chr6-134049116-4	chr6	134048612	134049612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MTD|LTR|ERVL-MaLR	13412.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.44993593377787	4.30190377597581	4.55161760659323	4.53851364740045	4.64425080497796	4.69590252245501	0.482864166646476	0.256066973916652	0.653115451305932
Merged-chr17-26640884-2	chr17	26640384	26641384	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35512.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	3.03987648551136	3.23677285819772	3.21847103277034	2.86690749812505	2.78912620082291	2.94176184903008	-1.47190307998165	0.0352735142872008	0.230542657828089
Merged-chr11-107344011-2	chr11	107343511	107344511	+	922.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	126709.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.94304414533103	4.99884905608183	5.00920403691377	5.18860257596569	5.12796407065336	5.30231188606559	0.46061798313679	0.20151412003913	0.591032319359039
Merged-chr13-5715631-2	chr13	5715131	5716131	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142461.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.80450705866056	4.14337674710572	4.07961443983817	3.77491573798026	3.76525357627854	3.80805346249511	-0.73309553903045	0.160882610876169	0.533611842220443
Merged-chr7-121071614-2	chr7	121071114	121072114	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	2916.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	5.6461428093299	5.77480957167655	5.82119401228008	5.37919194173117	5.45502424001678	5.54542173083332	-0.539130734809854	0.0927223557378293	0.405701265916025
Merged-chr10-61474484-4	chr10	61473987	61474987	+	790.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1346.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	3.01428629369073	2.72736587817608	2.93394652119599	3.13768637278911	2.87297517413328	3.44902156848426	1.22128483101749	0.097010854497081	0.415316897896969
Merged-chr4-102655564-4	chr4	102655051	102656051	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65708.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.0675930292845	5.12436244043297	5.63405940114402	4.81468081378894	4.72836700549407	4.75007943907038	-1.12322782545259	0.00575511450889762	0.0676658991177552
Merged-chr11-82005958-2	chr11	82005458	82006458	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29619.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	4.80914136643592	4.44287380523703	4.58247545703716	4.8925167320983	4.72963528784801	4.80923523908881	0.434786395958512	0.295950397828428	0.692718239683474
Merged-chr1-87620385-4	chr1	87619896	87620896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010566)	promoter-TSS (NM_010566)	84.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	7.81675985219935	7.74561866249992	7.68874653311	7.63217252135127	7.86599588585064	7.78017181290347	0.016715078074253	0.939759898520242	0.986731489878728
Merged-chr17-32319454-4	chr17	32318951	32319951	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357760, intron 1 of 11)	intron (NM_001357760, intron 1 of 11)	1787.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	3.69187273540508	3.57499376729315	3.87822203760031	3.89067200012688	4.00937191449331	3.79647817834783	0.628654018293514	0.238462027767503	0.635206594950809
Merged-chr3-87499107-8	chr3	87498622	87499622	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-26456.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	6.67051587958309	6.71567803890454	6.67212575176758	6.51680502147013	6.69263206755291	6.54553029994689	-0.149188286203811	0.561254811674965	0.865407801976397
Merged-chr11-78887198-4	chr11	78886679	78887679	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33608.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	5.31876116155852	4.98810643301016	4.89625407668789	5.30320202387178	5.39443088080193	5.07761620317073	0.375839538638428	0.32494282548975	0.71780685615767
Merged-chr6-138142029-2	chr6	138141529	138142529	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347489, intron 1 of 3)	intron (NM_001347489, intron 1 of 3)	442.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	4.25944672168372	4.22739283482945	4.50247598820827	3.9145655837299	3.78263750768711	3.95893745365813	-1.31057237032576	0.00828173753735555	0.0881887403389148
Merged-chr5-146825137-1	chr5	146824637	146825637	+	679.0	f1_c57bl6.idr	Intergenic	Intergenic	-7753.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	4.89722887583164	4.63444227045704	5.18101162513233	5.74308783145638	5.70014577842879	5.52071077885779	1.52208573772826	4.37577348769385e-05	0.00141342919395974
Merged-chr7-81200633-2	chr7	81200133	81201133	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13171.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	7.52075556934462	7.36438812474562	7.08999776210739	7.39327923861023	7.61196799468839	6.97786199579549	0.0322550790529217	0.90898567120226	0.979384717565381
Merged-chr3-137833306-4	chr3	137832804	137833804	+	983.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31183.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	3.39644203924381	3.22244863459698	3.59015065664769	3.43623124896758	3.26620443068294	3.60935766195488	0.123999733795628	0.84048639980001	0.962819298477451
Merged-chr5-8356516-3	chr5	8356019	8357019	+	606.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	11641.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	5.80863313464064	6.0888823553358	5.39381812226238	5.27794981047702	5.82797596635031	5.66868934328147	-0.34287000269268	0.366509406486644	0.751577290267468
Merged-chr13-119691308-2	chr13	119690808	119691808	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291439, intron 1 of 9)	intron (NM_001291439, intron 1 of 9)	957.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	3.81863910741907	3.51282451882213	3.54010596285536	3.66476731442251	3.59358818419121	3.66597794139113	0.0138959331422678	0.980306376810879	0.995500659055379
Merged-chr8-3644799-2	chr8	3644299	3645299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011503)	TTS (NM_011503)	-10971.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	2.28244771422424	2.28648235175135	2.6347197460335	2.28024478985109	2.06535412335247	2.64964091547606	-0.329552215522729	0.727219150168204	1
Merged-chr2-6179927-4	chr2	6179418	6180418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13333.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	3.31074817207775	3.22518123972519	3.33338593705871	3.28998075497278	3.08314522498175	3.11486916061004	-0.517803643696969	0.413138588041217	0.784770288990094
Merged-chr2-118567388-4	chr2	118566870	118567870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17684.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.41934639635657	4.05409180430052	4.36481770631512	4.32589065166502	4.73244263723383	4.34326892926861	0.528856822129736	0.268620704336914	0.665858598184161
Merged-chr7-29818929-4	chr7	29818402	29819402	+	938.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145880, intron 1 of 4)	intron (NM_001145880, intron 1 of 4)	2830.0	NM_001145880	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	4.69669248745003	4.80860983411319	5.074875439871	5.13278536704222	5.21899113469211	5.23485502500414	0.725423031988745	0.0549189030213102	0.301093238624048
Merged-chr5-124493641-4	chr5	124493190	124494190	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021430, exon 7 of 7)	3' UTR (NM_021430, exon 7 of 7)	10535.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	5.63094251647131	5.5111459726532	5.16997113085419	5.34635577884906	5.56110179474375	5.46410005735379	-0.0015157183956231	0.99656567551854	0.999103012741004
Merged-chr4-156210964-2	chr4	156210464	156211464	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4963.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	5.22443688100913	5.10073814059943	4.74609346507353	5.08359976601675	4.97903302162855	4.7284934717263	-0.223852456173305	0.580157267554484	0.87276422265422
Merged-chr3-139074091-3	chr3	139073602	139074602	+	842.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	1099.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	6.11610128379554	6.26865152609891	5.99803745596662	6.40495939419313	6.26349291794193	6.66663565149944	0.506473127150082	0.0862427678982299	0.389028875108445
Merged-chr9-67838935-3	chr9	67838432	67839432	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-1464.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	3.9819866183566	4.25594856488434	4.08331563428517	3.76776821609257	3.20907549534508	3.70303803549918	-1.76739632805935	0.00426324783477158	0.0545832167773001
Merged-chr11-37077465-4	chr11	37076950	37077950	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133209.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.99571592525829	5.06976233211806	4.72511777371815	4.92878036497229	5.01825765479989	4.91143082919804	0.0167629690703838	0.965428289449773	0.991941088468546
Merged-chr2-59246304-3	chr2	59245791	59246791	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	URR1B|DNA|hAT-Charlie	85441.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.50174625026568	3.468331004433	3.65134501080242	3.75453895956651	3.52938658720679	3.50622368991996	0.230551835903809	0.685245997640114	0.916203803074919
Merged-chr10-117905890-4	chr10	117905384	117906384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19575.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	8.09999982900851	8.11925299088444	7.85287161354241	8.00075806546306	8.32329194355359	7.92539475577677	0.0959850821361736	0.685656017037359	0.916366563318469
Merged-chr6-135168182-4	chr6	135167683	135168683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013546)	promoter-TSS (NM_013546)	32.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	7.9581786206976	8.2026685605579	7.6660471607789	7.97210858894708	8.1615096981224	7.32998563204722	-0.124959194492721	0.676950882693761	0.912626330986626
Merged-chr5-20950438-2	chr5	20949938	20950938	+	939.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030699)	promoter-TSS (NR_030699)	-551.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	5.93711599264985	5.95249921103264	5.47669209032684	6.00991016986099	6.11978306808742	5.541630799733	0.190696367360259	0.590401159154937	0.877218317361274
Merged-chr11-11763528-4	chr11	11763040	11764040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	45422.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	6.44182176367313	6.62357682619981	6.46254426747518	6.45544301750743	6.60925221664556	6.60888615236292	0.0715473159338975	0.786980948384178	0.948693859994902
Merged-chr12-80014542-4	chr12	80014063	80015063	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78299.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.92051336754528	4.30097910051444	4.05259718922316	3.75222843195904	3.78016934308163	3.7113594419633	-1.09602967611976	0.0380604934337476	0.241492873084892
Merged-chr4-33284614-4	chr4	33284091	33285091	+	886.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25720.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.58320122141784	3.36471792631526	3.64501556632877	3.37026646121653	3.5591711267607	3.4496744514404	-0.240973343571675	0.682528859918944	0.915100674772977
Merged-chr6-26454548-4	chr6	26454056	26455056	+	962.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	523130.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	2.93514858133561	3.01149621543845	3.29595653289056	2.78922455473285	3.15892588652036	3.09286376874842	-0.263298509319636	0.71252818674029	0.925161434403066
Merged-chr16-4630777-3	chr16	4630295	4631295	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 21 of 27)	intron (NM_030205, intron 21 of 27)	-5849.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	3.18907598600912	2.98002933313038	3.35944495835455	3.1908887466365	3.3930029108459	3.42984863176006	0.66458323261163	0.305051684362965	0.701313794825734
Merged-chr19-47003903-1	chr19	47003403	47004403	+	970.0	f0_balb.idr	intron (NM_001164363, intron 1 of 17)	Lx8b|LINE|L1	-10795.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	3.67709542112648	3.39766216724066	3.64076665381281	3.39199007315136	2.96981030961005	3.08334887576469	-1.68425561272803	0.013290630512538	0.122476751846967
Merged-chr3-107103117-2	chr3	107102624	107103624	+	934.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008417, intron 1 of 2)	intron (NM_008417, intron 1 of 2)	1557.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.49400506841979	5.67717794439369	5.34284647450672	5.98432035532908	6.16616055535072	6.0122642178104	0.963726306184956	0.00253630355625245	0.0371496734556618
Merged-chr16-32332761-4	chr16	32332243	32333243	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177633, intron 1 of 10)	CpG	491.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	6.42765042704839	6.53220443549591	6.86987711904885	6.95300839270215	6.9371863681614	6.87164780128238	0.485788943083477	0.0693969866346236	0.344780538804261
Merged-chr13-9159506-4	chr13	9158982	9159982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 13 of 17)	intron (NM_172585, intron 13 of 17)	65601.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.76677666887932	4.43462145578061	4.69522935301561	4.76577672124294	4.78431780591664	4.72204462317997	0.287473710997936	0.485586840385865	0.827504186777075
Merged-chr6-49319901-1	chr6	49319401	49320401	+	720.0	f1_c57bl6.idr	intron (NM_001311112, intron 1 of 3)	intron (NM_001311112, intron 1 of 3)	627.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	5.88004445576693	5.90841872435867	5.34237214218503	5.80557904259217	5.99260687971995	5.71673964419248	0.179014374590634	0.604500590949669	0.88314896167691
Merged-chr17-88528011-3	chr17	88527508	88528508	+	865.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2116.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	4.8303464302987	4.69875304982357	4.75112748498902	4.53092030509792	4.50296479545997	4.66153365499114	-0.479113089737339	0.239189275731949	0.635962973481514
Merged-chr3-30602476-4	chr3	30601979	30602979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030557, exon 1 of 8)	5' UTR (NM_030557, exon 1 of 8)	392.0	NM_001289622	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	8.21342817269054	8.31117253157301	8.107691952269	8.15838522548355	8.56077700612586	8.09952507254397	0.114305914163185	0.630414064500908	0.8947326910637
Merged-chr18-83932674-3	chr18	83932160	83933160	+	921.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153902.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	3.46445477321652	3.20234161630458	3.10636243920694	3.17177656995797	3.08559399339185	3.35373109266742	-0.284526083193367	0.663378847792518	0.907167603449963
Merged-chr14-30875691-2	chr14	30875191	30876191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3566.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	5.31823711081267	5.0693936628096	5.32306611495659	4.48967581050757	4.67242808141065	4.74445410094526	-1.32657049994202	0.000807443024008942	0.0152833756009409
Merged-chr3-144679394-4	chr3	144678882	144679882	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	40953.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.34263151281899	6.27054622575927	5.89820392500088	5.0795899642076	4.95551549595212	5.12210207239661	-2.16960158539428	2.03921044748915e-10	2.52874251735734e-08
Merged-chr3-96811420-2	chr3	96810928	96811928	+	622.5	f0_balb.idr|f0_c57.idr	intron (NM_001163497, intron 1 of 3)	ORR1E|LTR|ERVL-MaLR	3093.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	3.69574302198236	3.99067958400883	4.04931523358591	3.88997780280498	3.83706031747832	3.66376080479035	-0.35105995668867	0.513904701825963	0.842830426324247
Merged-chr4-62629680-4	chr4	62629163	62630163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	9991.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.80540427642914	5.2727153232571	5.51735989635412	5.55426601886246	5.70815246812606	5.49206339341175	0.0773331512288565	0.826532490497315	0.959136713258354
Merged-chr1-88586329-4	chr1	88585791	88586791	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	34774.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	6.63972252227346	6.53935509158205	6.39853547480479	6.44767431710089	6.69549228231038	6.36013360728809	-0.0246168758790671	0.929245248116251	0.983987942057929
Merged-chr12-111165303-4	chr12	111164797	111165797	+	911.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1073.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	6.26296980585459	6.01769969491421	6.16559407779628	6.2570873844587	6.19095667752316	5.4829237424627	-0.197627614393305	0.572221351500483	0.869807909725036
Merged-chr6-113748312-4	chr6	113747714	113748714	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-7533.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.14013143839939	6.27930854293581	6.43798041450218	6.84081469875617	7.19552113034332	6.49804123463052	0.961114408679629	0.00157841616661934	0.0257171336998225
Merged-chr5-102053058-4	chr5	102052565	102053565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	16856.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.25234181802671	6.88628697019295	7.2669306561702	7.54337360658447	7.4755216550472	7.02034467374211	0.344343842657301	0.21131662184222	0.603840566992255
Merged-chr4-142090270-2	chr4	142089774	142090774	+	835.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5970.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	4.76160156364941	4.75599653172992	4.77387299197062	5.17510648080893	5.23909417445901	5.02910899483321	0.857718830283981	0.0219718622610288	0.171891191708883
Merged-chr14-14347393-8	chr14	14346861	14347861	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 2 of 11)	intron (NM_008369, intron 2 of 11)	866.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	5.69025880789621	5.32480794253908	5.57792082680195	5.7621180532672	5.86394711196217	5.84859491586577	0.529554705455246	0.103050119587427	0.427980751216902
Merged-chr6-97211357-4	chr6	97210882	97211882	+	708.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	590.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	6.80306297054318	6.96530112114642	6.96153537896933	6.65827309233	6.59107767312912	6.38662402122135	-0.553091365712243	0.0337071187294187	0.224447978172013
Merged-chr19-24981602-4	chr19	24981143	24982143	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17886.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.871054440658	4.85863809265937	4.34321820383598	4.54968084323374	4.57413248543159	4.09754628799304	-0.691197313311163	0.159194759436359	0.531158781765317
Merged-chr2-61577044-2	chr2	61576544	61577544	+	816.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1542.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	3.20675481245937	3.12520929799375	3.08141374136007	3.26860224745702	3.18230953194696	3.327114000144	0.487794611077043	0.43975222741785	0.801342546077361
Merged-chr4-129828250-2	chr4	129827750	129828750	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7542.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.72185477143104	6.81387928032846	6.80449766530065	7.0480175412299	7.10696740503401	6.65226738326887	0.282205549809859	0.288108883800771	0.685470620286924
Merged-chr12-17710318-3	chr12	17709919	17710919	+	752.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	19610.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.14513856625552	4.25246937530986	5.09163807044407	5.70418776291889	5.1299738619295	5.28167201922283	1.70158519308705	0.032899640122018	0.221016733027037
Merged-chr5-103655900-2	chr5	103655400	103656400	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163550)	promoter-TSS (NM_001163550)	-168.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	3.96779798120624	3.80566995288822	3.73665681359671	3.86674792796776	3.79705900081915	3.75381815088052	-0.118362762007285	0.82124808337287	0.957942312428027
Merged-chr16-55823969-2	chr16	55823469	55824469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	-1831.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.03621850306808	3.14818638776347	3.39732900690042	3.12823968158968	3.13475427437619	3.56682307707388	0.361088001212051	0.588996711024142	0.876716948268319
Merged-chr15-3994600-2	chr15	3994100	3995100	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	1152.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	4.51568059129787	4.24523802519102	4.07216361552424	4.33475580074381	4.4927235237832	4.09116162731221	0.0733887233767029	0.881379173103108	0.972701446171725
Merged-chr11-86993829-4	chr11	86993333	86994333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-71.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.39122397131204	6.54983530771336	6.61237126363648	6.55178826153032	6.49406511875045	6.55423631995004	0.0241034549290471	0.927007506722309	0.983578869536024
Merged-chr13-42331314-4	chr13	42330825	42331825	+	892.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29849.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	2.87580201095003	2.60340600601941	2.87731514725113	2.87863522953086	2.62538002880892	2.95005657959878	0.157906865780916	0.833751856008925	0.961104751385188
Merged-chr4-115738712-8	chr4	115738185	115739185	+	923.59375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172698, exon 1 of 12)	exon (NM_172698, exon 1 of 12)	612.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	5.45937176528967	5.51795629372763	5.50829943149204	5.48290808887051	5.61950438143336	5.32658402138043	-0.00282646503492135	0.993217214273991	0.998651348330892
Merged-chr10-43995611-1	chr10	43995111	43996111	+	545.0	f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	Lx4B|LINE|L1	9235.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	6.34557286430997	6.35266790223657	6.01550499205131	6.07077599220188	6.23706822218927	6.27291523361425	-0.105053275410074	0.718586767890883	0.927402544945102
Merged-chr3-58449722-2	chr3	58449222	58450222	+	782.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081229, intron 2 of 3)	intron (NM_001081229, intron 2 of 3)	35002.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	2.49265414192227	2.59395994725757	2.53246150597861	2.69018859905884	2.45269303136124	2.96820343494432	0.958549887146912	0.234949513877675	0.631024470284135
Merged-chr14-25759842-4	chr14	25759333	25760333	+	950.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	9023.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.13062653422645	4.53696403401937	4.9856420601307	4.70463713346502	4.59813099329522	4.94740688421935	-0.354891489578799	0.415725540539423	0.786603847034844
Merged-chr4-136054077-3	chr4	136053554	136054554	+	686.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-683.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	3.58523147272997	3.34394604933088	3.49251611569668	3.55246409784506	3.19857595988598	3.39729319679432	-0.339486487654255	0.579005273040585	0.872437416842052
Merged-chr9-45301858-2	chr9	45301358	45302358	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-17242.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	3.32573815068857	3.1865609457495	3.23877496332154	3.34328033904054	3.07049759848942	3.31064757631031	-0.0420096497132519	0.94708552862114	0.988008807662239
Merged-chr17-7914240-2	chr17	7913740	7914740	+	861.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11760.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	3.99699059385838	3.85716220481324	3.56560150162439	3.81149708041291	3.58173599626524	3.6385520154681	-0.482199625542618	0.391683087231881	0.77069538219803
Merged-chr14-55761852-2	chr14	55761352	55762352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020490, intron 1 of 1)	intron (NM_020490, intron 1 of 1)	424.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	2.89141385580825	2.72457891036889	2.95159583646363	2.71634630050151	2.87874225721125	2.78314335918253	-0.294488517821589	0.683991361199016	0.915656624986289
Merged-chr17-34644195-2	chr17	34643695	34644695	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-688.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	5.05225041446098	5.06644645784452	5.03818281074377	5.15158587038846	5.2945809287021	5.26937709338299	0.388691858932204	0.272792148225477	0.669951714189667
Merged-chr2-127584668-4	chr2	127584117	127585117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028141)	promoter-TSS (NM_028141)	60.0	NM_001111029	72180.0	Mm.46715	NM_028141	ENSMUSG00000034800	Zfp661	2810405K07Rik|A1-5|Znf2	zinc finger protein 661	protein-coding	4.16779881987523	3.93951460148613	4.13019151092644	4.16551243947598	3.87000416543349	3.90529528038377	-0.276982194909546	0.582693253831739	0.873826743013405
Merged-chr8-34878804-4	chr8	34878285	34879285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 5 of 26)	intron (NM_175091, intron 5 of 26)	71175.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.20734694743939	4.50940297764001	4.17453670780085	4.02344689309838	3.88435817811061	4.14929856089149	-0.84354414813763	0.0856611603839572	0.38758530903906
Merged-chr12-13269236-5	chr12	13268747	13269747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027706, exon 1 of 52)	exon (NM_027706, exon 1 of 52)	120.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	5.97415636332234	6.12573728112875	5.92403871080972	6.59958759496308	6.63075847752169	6.15388551153881	0.788516332855088	0.00873191675317403	0.0916846093198945
Merged-chr7-49396630-1	chr7	49396130	49397130	+	967.0	f0_c57.idr	intron (NM_175272, intron 3 of 37)	B2_Mm2|SINE|B2	150441.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.33510090151481	4.93634718362604	5.03122370392585	4.43538339751533	4.14314604215563	4.47404288429463	-1.83184485136672	2.70223852417378e-05	0.000943549572469374
Merged-chr11-75679191-4	chr11	75678696	75679696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-63.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	8.39204386308539	8.51168932879661	8.22839684325071	8.25122317959033	8.32336426162409	8.03954530107879	-0.239427764889591	0.27818954692403	0.675506925626833
Merged-chr4-115835717-4	chr4	115835201	115836201	+	960.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175308, exon 4 of 4)	3' UTR (NM_175308, exon 4 of 4)	-3497.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	4.48161959304227	4.59715837720953	5.00099520081416	4.79418637292378	4.82172312131917	5.03205848405502	0.416615010733699	0.324217626179612	0.717324268869843
Merged-chr17-35088052-2	chr17	35087552	35088552	+	614.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1239.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	2.90539142536386	2.98161969302803	3.0463184311401	3.04103936985408	2.89445329747562	3.17473236017069	0.271439808351533	0.688296642718312	0.917193226920892
Merged-chr19-32906997-4	chr19	32906476	32907476	+	831.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	149399.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.737618822383	5.56212076719875	5.59421186576698	5.76061241891565	5.76538593800032	5.83985533161487	0.274978428443229	0.376348256647508	0.759174422146618
Merged-chr7-67425364-4	chr7	67424869	67425869	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52511.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.33426015785972	6.14707736861289	6.49661748207424	6.05183640247967	6.15715295128459	6.04850158343047	-0.393793573684203	0.174029933996058	0.553210993472106
Merged-chr6-101556494-4	chr6	101555997	101556997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178600.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	4.81444124571487	4.49232174109472	4.50882658503548	4.48048844291389	4.51992799171446	4.35183738448105	-0.394218021595183	0.367659181930297	0.752612310816183
Merged-chr9-44477904-4	chr9	44477374	44478374	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4951.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.3375395781971	4.1581973867373	4.3341188767592	4.93072365804172	4.95086100091857	4.99699617688908	1.65945817173915	7.7834045170226e-05	0.00229578703669768
Merged-chr9-114821864-3	chr9	114821295	114822295	+	842.5714109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	22357.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	4.66707571310276	4.81570831121138	4.64362397772203	4.79192449542582	4.98861993855025	4.53703721999662	0.194314757028247	0.64244928421266	0.899398873915991
Merged-chr11-53428818-2	chr11	53428318	53429318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001326614, exon 3 of 3)	3' UTR (NM_001326614, exon 3 of 3)	2013.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	2.75468716272478	2.80938945187786	2.73331176223679	3.04434328615216	2.69766793053459	3.10839528371269	0.934094514426145	0.206608942135386	0.597217982950086
Merged-chr3-144699790-4	chr3	144699301	144700301	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	20534.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	7.38008974702672	7.29896013831494	6.96284744405083	7.32600722333297	7.76864978287841	7.44222705641064	0.439230983707913	0.0995228890130263	0.420702120960978
Merged-chr15-78903435-4	chr15	78902945	78903945	+	868.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316685, intron 6 of 17)	intron (NM_001316685, intron 6 of 17)	3677.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	3.43953854534286	3.02669376038684	3.25142905084918	3.30260504544147	2.85054512160739	3.26690022304832	-0.401911724870651	0.569705079407457	0.868895247713032
Merged-chr5-121452490-4	chr5	121451983	121452983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	-9.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	8.52539080906185	8.72545238416861	8.28496607953359	8.13427437349519	8.42156169383572	8.41249793770733	-0.27815453161784	0.233320359894253	0.629682827928185
Merged-chr16-30599622-4	chr16	30599067	30600067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-156.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	7.68619721658162	7.53884886466606	7.37227642845569	7.31981352631978	7.50305122257916	7.28061223837263	-0.245017509447761	0.305437411190098	0.701557468278683
Merged-chr3-90432866-5	chr3	90432333	90433333	+	928.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145540, exon 1 of 30)	exon (NM_145540, exon 1 of 30)	803.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	6.76812760318822	6.97341535967933	7.18670292675235	6.6646298868754	6.7167363719917	6.84871456703883	-0.368944299565891	0.162524876355559	0.535982319836444
Merged-chr8-105171113-2	chr8	105170613	105171613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161458, intron 1 of 5)	CpG	439.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	6.95156517766642	7.22433191344666	7.4199415739311	6.87463562296795	6.92457111790604	7.29121452522023	-0.258021954145987	0.347879485513588	0.735872359218958
Merged-chr6-98499951-4	chr6	98499458	98500458	+	770.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157204.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	3.71883117881113	3.94799164112026	4.16683810161629	4.31318219301346	4.24468034807069	4.09561473740244	0.798334437018374	0.114069047068248	0.451007710546677
Merged-chr8-122280707-3	chr8	122280124	122281124	+	771.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1517.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.56680475530464	3.75895272916698	3.98861442393054	4.10462071212806	4.08180962458432	3.859806716263	0.778903235098561	0.144890950331585	0.507780063817804
Merged-chr3-84842999-4	chr3	84842495	84843495	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	RLTR31B2|LTR|ERVK	-21150.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.34351165968557	3.3081661932992	3.14110398138237	3.28548720309556	3.27920264003542	3.27373472720183	0.0285450157764866	0.963232465332847	0.991082197093192
Merged-chr19-8829850-4	chr19	8829327	8830327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081196, exon 11 of 14)	exon (NM_001081196, exon 11 of 14)	-7640.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	5.54016484431754	5.64719443832936	5.87312261504519	5.69903939405062	5.76150635402584	6.02256228858327	0.258509846172221	0.424486961007243	0.792697196836987
Merged-chr5-140392854-4	chr5	140392304	140393304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3496.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	7.435261658753	7.48837939340562	7.48994293231955	7.11523392991633	7.50076595685145	7.40333016546521	-0.173023723748532	0.473567914738455	0.82095667016199
Merged-chr2-30473067-3	chr2	30472601	30473601	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	1098.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	4.34428629797802	4.17905948694409	4.30241641599456	4.095176340947	3.95982826928278	4.41089501428806	-0.330145489553568	0.495837662322804	0.832747864656788
Merged-chr5-105701575-4	chr5	105701052	105702052	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	742.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.57056631849855	7.71831427946396	7.07439051638579	7.29146289012538	7.40532250367061	6.86391689408796	-0.405454650713453	0.168681340783667	0.54534956551608
Merged-chr5-92499666-4	chr5	92499164	92500164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	5993.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.51341329392361	6.43173341999258	6.41842145150523	6.33050435467418	6.40924651347795	6.45961423030551	-0.0946796527788441	0.720755030745261	0.928324696220711
Merged-chr6-90714918-1	chr6	90714418	90715418	+	747.0	f0_balb.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	1611.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	4.36264371997202	4.47116689472621	5.1074167957531	4.52742164346016	4.67616863286381	4.81661427653978	-0.00610709077319047	0.989673907252124	0.997611022725407
Merged-chr4-132463975-4	chr4	132463478	132464478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026039)	promoter-TSS (NM_026039)	-57.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	5.51575748668331	5.64298318585996	5.71475099607276	5.52873604656072	5.64575236010077	5.44254802392005	-0.135995768183002	0.675331424633729	0.912152821313949
Merged-chr10-40358331-3	chr10	40357828	40358828	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	9020.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	3.41774189885414	3.46017259108363	3.45491018628239	3.49551297492695	3.28962714963848	3.57866395195208	0.031843698561602	0.956894087533309	0.989887454023164
Merged-chr14-122107575-3	chr14	122107088	122108088	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	506.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	8.44934821678739	8.86096991506315	8.2190851324208	8.36277088916433	8.57956988791835	8.37593380327231	-0.137728373335614	0.584281329019484	0.87456162664244
Merged-chr8-111939990-4	chr8	111939490	111940490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-713.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	5.87505754006027	6.22845372581868	5.55512442913538	5.95158079224192	6.11484721122613	5.87270478600937	0.102195839836999	0.763691213304539	0.941793063578371
Merged-chr3-59235601-4	chr3	59235101	59236101	+	649.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 19 of 43)	intron (NM_177855, intron 19 of 43)	-24719.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.62149105244686	5.74195859403049	5.59403161256514	5.56222206769318	5.49638899906657	5.90633275411729	-0.00618646326938611	0.985094906478226	0.996873682039026
Merged-chr4-134767991-4	chr4	134767470	134768470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145554)	promoter-TSS (NM_145554)	34.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	6.65110125577945	6.85140037958211	6.68672248017617	6.75107019289899	6.70518608516151	6.62978784536632	-0.058296347342382	0.81946188723348	0.957283576025177
Merged-chr14-120284245-1	chr14	120283745	120284745	+	541.0	f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	8576.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.30885677103269	3.4296637305136	3.71010480056517	3.42481045200307	3.53367580888853	3.68114719804801	0.224351004992246	0.705863560487588	0.922834459892351
Merged-chr10-54074007-2	chr10	54073507	54074507	+	775.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	1789.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.39452318822998	2.9907624845579	3.1506288416605	3.09883477186815	3.0163925377648	3.16456547093235	-0.433797559466042	0.517263023982492	0.844527100635531
Merged-chr2-126472059-2	chr2	126471559	126472559	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	19494.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.3191690772222	3.2890649139199	3.53978552171969	3.38704935813077	3.02577621128728	3.55889558826726	-0.181953693432388	0.780653115579285	0.946078518476608
Merged-chr6-28486606-4	chr6	28486120	28487120	+	916.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6272.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	6.01329708837944	5.81268106935956	6.30547865121819	6.58333712689544	6.58370261652336	6.73359319004911	0.967392108063473	0.000933101185182425	0.0170528186726684
Merged-chr7-45338381-2	chr7	45337881	45338881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029741)	TTS (NM_029741)	3112.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	2.44352051884924	2.70357259273239	2.55880687208777	2.71013685952957	2.71889188832869	2.75968853010076	0.849013112381897	0.273703824049763	1
Merged-chr17-13543018-2	chr17	13542518	13543518	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	11076.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	3.30935550741664	3.51262395643422	3.56845903125443	3.42983526816885	3.2798664744277	4.05167046349499	0.554483973349739	0.39339528760295	0.771547729581095
Merged-chr9-78526317-3	chr9	78525833	78526833	+	907.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44609.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.3309837338073	5.17994957594451	5.52140665083938	4.9712125620448	5.08036639932625	4.87924535305676	-0.73261185554229	0.0488632741384222	0.280865937725189
Merged-chr7-45564303-2	chr7	45563803	45564803	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	B1_Mus1|SINE|Alu	-5850.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	2.57615722965993	2.50284603274332	2.86713495776637	2.56903469273428	2.42791554370764	2.58127976243162	-0.732067588960473	0.358327696854116	1
Merged-chr5-101947813-2	chr5	101947313	101948313	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	122108.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.26466245921715	4.31466983538506	4.24865318676763	4.7820645583102	4.57820772411143	4.70312720278344	1.02602057938754	0.0175355866596275	0.14792630913417
Merged-chr7-100944055-1	chr7	100943555	100944555	+	706.0	f0_balb.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-11894.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	6.73057881004488	6.80233743697347	6.54255572628278	6.49675838361309	6.85152542740118	6.43424312380648	-0.129322743492108	0.646014836288658	0.900853513374787
Merged-chr1-144300843-4	chr1	144300334	144301334	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-51730.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.71982481624638	4.28864602779707	4.47046967542455	4.50130923029565	4.47218215392758	4.36047745969574	-0.145925482779468	0.745493562810266	0.936177103310491
Merged-chr8-23028324-4	chr8	23027779	23028779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6820.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.04251532667976	4.33049457542641	4.77993486530715	4.38653217050236	4.18623941169341	4.51823096533967	-0.116693040964151	0.816782784485779	0.956754861188725
Merged-chr18-61536700-7	chr18	61536188	61537188	+	991.347595	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177828)	promoter-TSS (NM_177828)	-152.0	NM_177828	328967.0	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	4.86161617236168	5.1936841515448	5.17792324176764	5.13873601096871	4.89819332277181	4.96934735990517	-0.169278358234579	0.658839044300856	0.90510021569192
Merged-chr6-126836280-2	chr6	126835780	126836780	+	828.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_025358, exon 6 of 11)	exon (NM_025358, exon 6 of 11)	12864.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	4.51428339247538	4.85934674571695	4.84208373104952	5.04142601340868	5.18371513983685	5.18315169279008	0.858149494907765	0.0286109462712301	0.202712842075657
Merged-chr3-95740713-4	chr3	95740213	95741213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356965, intron 17 of 17)	intron (NM_001356965, intron 17 of 17)	-1144.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	6.86686097784867	7.07737127453552	7.00529549408096	6.54910178487577	6.78927090434891	6.98447872820376	-0.316326743789894	0.232493621467429	0.628804775351458
Merged-chr6-38742667-3	chr6	38742155	38743155	+	835.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 6 of 14)	intron (NM_010433, intron 6 of 14)	79586.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.5302901289303	3.63079834359333	3.51735698399103	3.35242600400694	3.46071698524955	3.69135441035532	-0.216870337405057	0.708618208425461	0.92375127577894
Merged-chr4-150855840-3	chr4	150855354	150856354	+	719.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	784.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	6.30212587564342	6.27477622936378	6.22574951061507	6.15359971306661	6.15240402068512	6.36358911006505	-0.0853792155066506	0.758796662318589	0.940287421764314
Merged-chr17-46556335-4	chr17	46555824	46556824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020493)	promoter-TSS (NM_020493)	-162.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	7.08728657960088	6.77182897265045	7.14656009224214	7.14496234770342	6.80708616866635	7.22742748379273	0.0874898210288941	0.748634467309973	0.937087780077821
Merged-chr8-84744771-2	chr8	84744271	84745271	+	630.116699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	29598.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.45021420491222	3.33113808176062	3.45164612831074	4.02361820217011	3.70557311932308	4.12423385488782	1.89187345298427	0.00119891359163088	0.0207399588632895
Merged-chr1-172082746-4	chr1	172082264	172083264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	-15.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	8.44486374423885	8.55204072563057	8.17925851196575	8.3704429734393	8.46282897821764	8.18019283268272	-0.0825867245772824	0.715152897145623	0.926300061731496
Merged-chr2-10048094-4	chr2	10047618	10048618	+	823.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 1 of 6)	CpG	491.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	5.38632441824024	5.64930032740688	5.41655034070495	5.85870925928445	5.81411615333277	5.44920527497043	0.436661144784496	0.199287957321535	0.587694450777479
Merged-chr19-4001334-2	chr19	4000834	4001834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025529, intron 2 of 3)	intron (NM_025529, intron 2 of 3)	754.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	4.05228325429947	4.05363712555623	4.18263130128834	3.9416665846921	3.73225416711158	3.9233020955911	-0.702417178922307	0.162418016543848	0.535842287006085
Merged-chr1-180300469-4	chr1	180299980	180300980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-29996.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	4.78944819667875	4.62444248949235	4.57867028244107	4.64127246995692	4.61615800213926	4.98052395890174	0.172073535651634	0.681005261586103	0.914528264651256
Merged-chr6-28424013-3	chr6	28423504	28424504	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007480, intron 1 of 5)	intron (NM_007480, intron 1 of 5)	400.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	7.13009726871214	7.13037747715504	7.25600730898845	7.25465063835329	6.90893286598555	7.19765714326355	-0.0709387643581888	0.775948637466464	0.944804182096302
Merged-chr5-99361961-4	chr5	99361486	99362486	+	875.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-109059.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.19673463338397	7.13723553026229	7.27306476045095	7.38151259727878	7.47063217504096	7.284500389518	0.277611549270306	0.230292962415858	0.62617530934902
Merged-chr17-33702378-4	chr17	33701856	33702856	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252480, intron 3 of 4)	B1F2|SINE|Alu	16321.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	2.96649915534186	2.97647968020212	2.78818638742739	3.07427208200458	3.13935764486827	3.05252008313886	0.797713141255872	0.247146124146358	0.644145276280485
Merged-chr2-163646457-2	chr2	163645957	163646957	+	876.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028113)	TTS (NR_028113)	-1314.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	5.51322685434046	5.63813598876656	5.54056845593314	5.2871580249433	5.68001751929853	5.63053597867935	-0.0368075343326675	0.913255870399189	0.980560320145079
Merged-chr8-92853745-4	chr8	92853255	92854255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008610)	TTS (NM_008610)	-1578.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	7.50620492090865	7.41825687586772	7.46685421345858	7.62335200131599	7.99902662832871	7.80093758057592	0.51807974317368	0.0264981910341099	0.193459812193228
Merged-chr2-181193208-4	chr2	181192700	181193700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5953.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	5.5177660160264	5.71327103075253	5.62251835311699	5.80250293046087	6.00940200400367	5.93869284638851	0.543168138978934	0.0805445037958687	0.375547578708641
Merged-chr11-115694198-4	chr11	115693708	115694708	+	896.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	5326.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	8.09915814599981	8.40050738899595	7.6108873324708	8.01871096230254	8.46742414698383	7.81947979881694	0.075354448592963	0.802479093984921	0.953198534492307
Merged-chr19-56770801-4	chr19	56770301	56771301	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42882.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	4.00467612650842	4.01170102633323	4.30150622058666	3.86618768931934	3.70415031462942	3.97172127850903	-0.79662374758035	0.12260668111275	0.468447824503155
Merged-chr8-86888750-4	chr8	86888241	86889241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3483.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.40253685101042	6.66760221724834	6.87688987292276	6.00762489215268	5.99690763452936	6.4877810619107	-0.792509295423979	0.0113326719672384	0.109903143245918
Merged-chr4-53153797-2	chr4	53153297	53154297	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	6098.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.43453111386081	5.63203187167685	5.83206543987352	5.58936793474028	5.70153439785168	5.84590806322278	0.144734215993474	0.6602548165187	0.905906890165946
Merged-chr17-5867620-2	chr17	5867120	5868120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	26240.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	2.95658066825351	3.19892530071203	3.35452848217245	3.21057547417645	2.97835882828228	3.02839388745559	-0.433486411953519	0.522956024150498	0.847897990208781
Merged-chr10-26799821-4	chr10	26799316	26800316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	27304.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	7.73249579283596	7.70512268658644	7.47219219571954	7.52361860359573	7.64135682314597	7.28173806894684	-0.214942963955623	0.373238383560871	0.757104325190955
Merged-chr11-98849406-3	chr11	98848904	98849904	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 10 of 15)	exon (NM_001080925, exon 10 of 15)	12619.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	3.05976582688856	3.59869691546512	3.49482519387819	3.31299463115848	3.25161390356881	3.45934915378664	-0.249628958707955	0.702539527798872	0.921908665861083
Merged-chr3-31424883-1	chr3	31424383	31425383	+	566.0	f0_balb.idr	Intergenic	Intergenic	-114564.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.42044025463735	3.63551818996879	3.72599123306665	3.21789663959165	3.15759663395221	3.32515860589358	-1.44841741508508	0.019407512919588	0.158257578891912
Merged-chr10-8061908-3	chr10	8061397	8062397	+	859.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105774.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.67284960621276	3.45778499550229	3.36076073593992	3.64320904488462	3.47637233962189	3.70853380389055	0.348587460821754	0.551458349592615	0.861230744829578
Merged-chr11-94588776-2	chr11	94588257	94589257	+	659.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	13029.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	5.2323200289726	5.05354572549714	5.41410799499164	5.06966129310399	5.22370135417802	5.23924014284239	-0.107030133531242	0.768304961921149	0.942864224975033
Merged-chr13-107760058-2	chr13	107759558	107760558	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	72661.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	4.51749327266345	4.43893980767219	4.47475218210752	4.27341941865139	3.89294381612956	4.13974197855407	-1.01386616807378	0.0320696111018839	0.217424280987986
Merged-chr8-94183364-4	chr8	94182851	94183851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4262.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	6.15121767244356	6.56006159033219	6.35801190552245	6.42091386351964	6.39507662269403	6.0788715087907	-0.0879246480392602	0.768477116596479	0.942871018290895
Merged-chr4-42959701-1	chr4	42959201	42960201	+	552.0	f1_c57bl6.idr	TTS (NM_001355440)	TTS (NM_001355440)	9305.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	3.20065212420225	3.19576583184733	3.38000814330789	2.91907301756126	2.91286141249791	3.29190510904705	-0.934375425513048	0.17079050265211	0.54851767134078
Merged-chr10-77965620-2	chr10	77965120	77966120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L3|LINE|CR1	4252.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	5.35756418133719	5.31769194198122	5.92491525936568	5.8040095884179	5.61699169314751	5.77815115729361	0.340575608413353	0.341696334755878	0.730935106878357
Merged-chr5-4877390-1	chr5	4876890	4877890	+	811.333313	f0_balb.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-119174.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.43004145473333	4.51417069844447	4.37689606777113	4.2074261931096	4.25319573049024	4.56746335186791	-0.266783256528509	0.55460745310294	0.862883680820358
Merged-chr11-45945016-4	chr11	45944519	45945519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028185)	promoter-TSS (NM_028185)	-84.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	5.03971634449476	5.0665807968549	5.03927815480222	4.93526183662151	4.73751811965085	4.64213125312234	-0.591094664075371	0.126061429079224	0.474780219563845
Merged-chr19-8833113-2	chr19	8832613	8833613	+	971.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081196, exon 14 of 14)	3' UTR (NM_001081196, exon 14 of 14)	-4354.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	4.51935977015422	4.40909588906744	4.94170432456531	4.48184146919271	4.30166188384761	4.84028870411296	-0.20225233394948	0.667747044452215	0.908813236401378
Merged-chr6-125367886-4	chr6	125367393	125368393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	12611.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	6.21171660579805	5.96678552872187	6.16655350353016	6.21630816989582	6.17614001940817	6.4891127012208	0.294940351125705	0.313996763297102	0.708376289358925
Merged-chr2-102002600-3	chr2	102002110	102003110	+	654.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	116348.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	2.73975308084682	2.73588710565395	2.82381809590118	3.14417247406274	2.74698130153802	3.13464699255128	1.23563137886301	0.0922546259894013	0.404655926163738
Merged-chr11-60209343-3	chr11	60208819	60209819	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1152.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	5.02455666248789	4.8222927121778	4.32317377244981	4.97791795560239	4.7091828995295	4.17832602149326	-0.212954043604122	0.684269756157628	0.915825160524325
Merged-chr11-79525754-2	chr11	79525254	79526254	+	673.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033711)	TTS (NM_001033711)	-1992.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	5.25445707607446	5.32263760852072	5.82874920496134	5.54404898100424	5.68603970889493	6.05988464684487	0.543118055469164	0.143994403205244	0.506588698903881
Merged-chr4-128729443-2	chr4	128728943	128729943	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1872.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.63776425343156	6.11344744410129	6.33451816967933	6.81831159875083	6.95657357605477	6.73224820634299	0.730426580768403	0.0116428473095221	0.111919828896801
Merged-chr4-118143878-3	chr4	118143379	118144379	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 18 of 21)	intron (NM_001161823, intron 18 of 21)	-8933.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	6.13813619988537	6.38846822629775	6.34333248907722	6.32624643823366	6.23495443938841	6.32639120490171	0.00068305595388423	0.998042728550984	0.999579683478894
Merged-chr14-18235583-2	chr14	18235083	18236083	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	3523.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	6.17712878231884	6.40101990964955	6.17621005480095	6.36590469347831	6.49574664935377	6.03064941782382	0.107403467318969	0.719230102183184	0.927739599461429
Merged-chr15-5739848-3	chr15	5739352	5740352	+	896.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243534.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	3.44044882586637	3.35325058639019	3.33554936872218	3.50603763405979	3.28145505423829	3.29084636145088	-0.0593719498723084	0.92165732679098	0.982542868764899
Merged-chr11-69037451-3	chr11	69036946	69037946	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8191.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	4.95416306416776	5.15101728227009	5.27205132756765	5.41146033311576	5.62881649451041	5.17039247643019	0.610540945179288	0.0980010514299933	0.417343338317564
Merged-chr15-74528273-3	chr15	74527798	74528798	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359759, intron 1 of 30)	MIR|SINE|MIR	12102.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	2.23548165686033	2.32211544991468	2.37336793007406	2.10461247629533	2.0686776670593	2.18841658943858	-1.4346254740581	0.111970168067329	1
Merged-chr9-116099143-4	chr9	116098647	116099647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76216.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.93138513192389	5.97386467368898	6.28201707649125	4.95860900253152	5.15781787658799	5.2733849571139	-1.75779761594053	3.9059897494098e-07	2.36714927216963e-05
Merged-chr2-133552877-6	chr2	133552349	133553349	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007553, exon 1 of 3)	5' UTR (NM_007553, exon 1 of 3)	690.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.12155814013433	4.79190135419856	4.88144292244881	4.45262697425459	4.09587917114132	4.17220322706014	-1.71479818505545	0.000154918288378388	0.0040844236183108
Merged-chr9-99378208-4	chr9	99377724	99378724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	-19694.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	4.89567697028352	4.68530399077225	4.8083607540328	4.81512030501652	4.32900520595849	4.64054122756513	-0.457941797970432	0.288696921567082	0.686124851873233
Merged-chr13-74246369-2	chr13	74245869	74246869	+	975.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-37669.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	5.79773918711989	6.24052560607247	5.59255913225621	5.21486332426236	5.52365511417795	5.5393372297759	-0.886487182037454	0.0145149294356127	0.129726986947203
Merged-chr10-62920657-4	chr10	62920163	62921163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	30.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	7.30810439340592	7.44095223558568	7.35248890145914	7.3620355759072	7.49163512524371	7.02415525768155	-0.0746090588716593	0.766415790291446	0.942467872936068
Merged-chr7-110121106-2	chr7	110120606	110121606	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-953.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	6.94085742648827	7.12287062798323	6.58537374550714	7.11219712442974	7.33898124704875	6.76733013625595	0.292260278217562	0.322619648589492	0.715997472916187
Merged-chr7-31127085-4	chr7	31126545	31127545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-22.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	6.31671368948368	6.2287469232618	6.26561636487709	6.49820632186069	5.87172442135677	6.02156817553836	-0.186041497099049	0.559557597141861	0.864986578702902
Merged-chr1-86491880-2	chr1	86491380	86492380	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34677.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.05550972141941	4.02085936698769	4.19297325629004	4.29559288312908	3.90636519714218	3.86914406912801	-0.135662893835778	0.790065033152866	0.949368241827272
Merged-chr9-59749086-4	chr9	59748582	59749582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	1567.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	7.1731142757622	6.94747656939708	6.74302089154263	6.93734845299158	7.24317458169716	6.84948288643417	0.0860631124430542	0.754005557658589	0.93863488639691
Merged-chr17-80323960-4	chr17	80323421	80324421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145452, intron 1 of 17)	intron (NM_001145452, intron 1 of 17)	16514.0	NM_001145452	381112.0	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	4.20043491684149	3.88531778795437	4.20794737672524	3.81754477496638	3.93932125254975	4.05005581667321	-0.493019583329624	0.332651607738011	0.723716858669256
Merged-chr2-11426884-4	chr2	11426378	11427378	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28378.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	4.95505706700775	5.02735230135124	4.69468964108055	4.97103703829936	4.32544487596017	4.18990415429151	-0.817801477442188	0.0971064691193097	0.415511420471024
Merged-chr1-45826973-4	chr1	45826495	45827495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31829.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	6.47427862674408	6.50052470926788	6.44913192298928	6.29141765914737	6.69343363674336	6.33643843802156	-0.0162519583369537	0.954248160219537	0.989495550016789
Merged-chr9-78175987-4	chr9	78175498	78176498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	84.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	8.81871503157145	9.05764470225886	8.54714601039235	8.95241111016915	9.17395382704407	8.68581134713245	0.175206593405246	0.478189194280671	0.823624523176113
Merged-chr6-39007337-4	chr6	39006807	39007807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	L2c|LINE|L2	60279.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	6.66303180779382	6.33775363627477	6.54168432302751	6.34788802901735	6.50155967600113	6.44110843265149	-0.139301813355491	0.612692724779235	0.886888853880768
Merged-chr10-94471654-4	chr10	94471147	94472147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-43210.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.0313199101905	8.1614671906087	7.77841585510966	7.95481829819077	8.22394017589951	7.88566663253989	0.0421481551235264	0.860017790602792	0.967441103100897
Merged-chr16-11070184-5	chr16	11069690	11070690	+	899.8350220000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3892.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	5.43718271847425	5.35697428931015	5.26214268242636	5.39385989235405	5.14879950623821	5.2274563927793	-0.200778292154586	0.563774304464313	0.865992481769395
Merged-chr11-104352315-3	chr11	104351815	104352815	+	723.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 7 of 14)	ID4_|SINE|ID	89976.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	3.49144188674712	3.25505202092842	3.16507690890668	3.34753104364917	3.25756881904574	3.29816315279408	-0.0652301451473147	0.917001671123961	0.981497941482146
Merged-chr1-106100849-2	chr1	106100349	106101349	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70675.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	3.39520742799044	3.41324197912916	3.63060939784739	3.39502780429055	3.4652906701564	3.20494139270809	-0.427359084257305	0.485559284732635	0.827504186777075
Merged-chr18-65934993-4	chr18	65934504	65935504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013833, exon 3 of 3)	exon (NM_013833, exon 3 of 3)	4085.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	2.85408371892953	2.57757228099341	2.7276585287482	2.8123328582719	2.56928641992768	3.09393371881218	0.571510667581387	0.46535269353745	0.816986326065284
Merged-chr3-36772147-2	chr3	36771647	36772647	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81980.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	4.71712926620882	4.94176775827749	4.94928089305642	4.67895057049866	4.8262037953323	5.11237041826609	0.0110477351509927	0.978166469618626	0.995064192237015
Merged-chr6-136655238-4	chr6	136654784	136655784	+	778.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	B3|SINE|B2	6609.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.35244884735671	5.37143659303568	5.51389237871342	6.0795788350741	6.11182800562609	5.94427144553035	1.17585244001963	0.00014330378483986	0.003823027037177
Merged-chr2-17741685-4	chr2	17741196	17742196	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10628.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	3.75895687917473	3.4076979436883	3.3341300548959	3.54496842351941	3.53505656665794	3.52352151258249	0.0491557869847076	0.934647506661576	0.985727536128156
Merged-chr9-121704054-2	chr9	121703554	121704554	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178677, intron 1 of 7)	B1_Mur4|SINE|Alu	975.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	3.75178519231925	3.50174835287098	3.32798914176804	3.50115822961105	3.509004240741	3.46045797638866	-0.197904206983358	0.740336929735308	0.934509856785078
Merged-chr4-139380560-4	chr4	139380082	139381082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-77.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	7.78708553650842	7.89111262551415	7.56300661409466	7.79093672319454	8.03187682799167	7.92704815578456	0.231165097474177	0.316092007769226	0.710195598165516
Merged-chr15-38518334-4	chr15	38517829	38518829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	CpG	937.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	8.18686162075039	7.78304068107406	7.57533721814126	7.9658252328812	7.82631220822908	7.83141202349511	-0.00887983805380067	0.972338829397381	0.993868590220018
Merged-chr15-38519438-4	chr15	38518930	38519930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102458)	promoter-TSS (NM_001102458)	-164.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	8.2993112853177	8.51195381902236	7.95039301195937	8.28335691416774	8.51308531347734	8.15593998750361	0.0686496783112162	0.783763022676959	0.947284320139836
Merged-chr8-34901812-3	chr8	34901314	34902314	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	63876.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.87945000028215	2.6089070287778	3.04864547892106	2.79477504685619	2.74256507088948	2.7679443356627	-0.430556157800604	0.565116434857434	0.866552670637515
Merged-chr2-118745237-2	chr2	118744737	118745737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-521.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	4.3079451372914	4.0906433503118	3.96960797560658	4.13226953580831	4.0461278744304	3.8811596308749	-0.311246804017174	0.534494868571959	0.853068627162717
Merged-chr2-77280277-4	chr2	77279784	77280784	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	CpG	308.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	6.20282235216564	5.8089176240125	5.7663848997846	6.40738044921437	5.69448351303854	5.82914311834122	0.123372321022791	0.734462197492852	0.932455455126414
Merged-chr11-69016004-4	chr11	69015518	69016518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013256, exon 1 of 23)	5' UTR (NM_001013256, exon 1 of 23)	107.0	NM_001013256	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	7.43982652081413	7.75658339214716	7.41138344767361	7.48621286839781	7.95650225113406	7.53151316285837	0.194206355078171	0.46152832038805	0.814992635038861
Merged-chr17-48300459-4	chr17	48300018	48301018	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033405, exon 1 of 5)	5' UTR (NM_001033405, exon 1 of 5)	480.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	4.32742504955633	4.47858726677937	4.49047860886888	5.03647549449051	4.8366702530656	4.64459383168796	1.00735060428923	0.0169390669529708	0.144545778178935
Merged-chr7-29134910-4	chr7	29134404	29135404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145149)	promoter-TSS (NM_145149)	-29.0	NM_001174155	233046.0	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	3.41036534641662	3.23372271004873	3.27155577280509	3.84777471327376	3.69090241213517	3.68801364549225	1.60726439179291	0.00683661408333744	0.0768108269843832
Merged-chr9-77754703-6	chr9	77754243	77755243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151778, exon 1 of 17)	non-coding (NR_151778, exon 1 of 17)	208.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	7.55259964962284	7.10406669319377	6.81650759636968	7.09178276624447	6.73552578720837	7.00738361635488	-0.383247218205719	0.200089842086875	0.588889204172492
Merged-chr2-166190506-2	chr2	166190006	166191006	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34823.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.74023300059079	4.55851736055075	4.87770874623274	4.45392450081064	4.26826109162343	4.61262013014601	-0.695582410708338	0.1103771915212	0.443963133953498
Merged-chr10-128779675-4	chr10	128779175	128780175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11235.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	8.22594184496516	8.45718253603645	7.99466281144799	8.16848495216606	8.44970229436348	7.7818515373648	-0.103038051618258	0.702325693884854	0.921882689522882
Merged-chr1-118473661-2	chr1	118473161	118474161	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-14396.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	2.72433049711476	2.81410736930083	2.80468736223938	2.96833012812097	2.81199055837594	3.05638253284208	0.812521186132211	0.25217360143622	0.64970951645701
Merged-chr12-86897380-4	chr12	86896892	86897892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12578.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.38050487526567	7.28769720222728	7.04059614673074	7.39072665629023	7.61252305368043	7.5569666902258	0.401511939222399	0.0980896811412441	0.417443033367463
Merged-chr14-20771284-2	chr14	20770784	20771784	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039139, intron 3 of 18)	intron (NM_001039139, intron 3 of 18)	22804.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	2.0644062316583	1.99416151769482	2.16047019407754	1.77307105521045	1.79112793845755	2.0400236726589	-1.81359157845569	0.0854145067321056	1
Merged-chr4-19537544-4	chr4	19537061	19538061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 7 of 15)	intron (NM_027769, intron 7 of 15)	32547.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	5.7642421225718	5.7878202677005	5.72209941809544	5.60092336709624	5.60001900723289	5.70549406554415	-0.236405842879971	0.444077168857554	0.804011773060171
Merged-chr7-80187050-4	chr7	80186483	80187483	+	874.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013659, exon 1 of 15)	5' UTR (NM_013659, exon 1 of 15)	142.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.32012748771057	5.59403550624713	5.57892717083551	5.15059245231819	5.633892348031	5.81557266307245	0.108905031215374	0.768558090428421	0.942871018290895
Merged-chr15-98867512-4	chr15	98867016	98868016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	3689.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	4.20621251375092	4.1265463576105	4.29096462003572	4.31675767664744	4.19593431666847	4.44157251285978	0.297906429452434	0.516553610273413	0.844296391152365
Merged-chr5-139017912-4	chr5	139017405	139018405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22952.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	7.20532824254611	7.29433232127242	7.03555178590962	7.33647817322401	7.31923166306078	7.07999564786687	0.100737891695606	0.680177367258732	0.914139397449033
Merged-chr10-42760431-4	chr10	42759921	42760921	+	989.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	4.24492319726392	4.14203950983964	4.06684442312742	4.38227528458241	4.85500304016198	4.51263108012742	1.16529127568174	0.0130904097022369	0.121389369274906
Merged-chr1-136627853-2	chr1	136627353	136628353	+	741.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	2952.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.03943080141106	5.10269461571606	4.92878778160497	5.38936885912472	5.52332481078942	5.34242459872385	0.797919391944015	0.0239116460960436	0.18176870531332
Merged-chr4-40244951-2	chr4	40244451	40245451	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5126.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	4.98619913156613	5.62480103191842	5.3192875131372	5.46536350057471	5.71838755474684	5.35150953077459	0.359787882644633	0.349693114549313	0.737704147134326
Merged-chr1-45923424-3	chr1	45922902	45923902	+	919.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 2 of 7)	intron (NM_016917, intron 2 of 7)	2192.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.89709479491574	7.42942790506489	6.55847774727385	7.33282398286328	7.73328838147795	6.41024684724523	0.383148194467732	0.570922592577558	0.869288072801053
Merged-chr18-7869044-4	chr18	7868486	7869486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146298)	promoter-TSS (NM_001146298)	154.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	8.0601896095191	8.22803331239452	8.36967848025979	8.16768455946298	7.90092221854119	8.08872665243426	-0.236396435912076	0.292879465521175	0.690053425164737
Merged-chr11-87427479-2	chr11	87426979	87427979	+	810.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-112.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.78541303905259	5.75096323778219	5.72202312086437	5.37998836813423	5.83545749195831	5.70539243373717	-0.170788438154226	0.605020774065242	0.883330817515343
Merged-chr18-15196459-2	chr18	15195959	15196959	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45013.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	4.23576854811937	4.38761988168814	4.79930545126379	4.59070109717365	4.58368334981085	5.1182157776554	0.69845701267021	0.140324134405572	0.50067889935277
Merged-chr7-19276447-2	chr7	19275947	19276947	+	893.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177691)	TTS (NM_177691)	3602.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	5.44754753889339	4.87569213448114	5.46756426752339	5.68960716721297	5.96282106906519	5.67007168841406	0.948408678740128	0.0111626504100338	0.108672261064478
Merged-chr9-41212816-4	chr9	41212288	41213288	+	817.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 2 of 4)	intron (NR_040392, intron 2 of 4)	6633.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	3.36345863318166	3.06175151770645	3.35554534841089	3.94240678638779	3.58428006388271	4.03956675757779	2.21659550545837	0.000565829111541021	0.0115707812025326
Merged-chr10-13438610-4	chr10	13438107	13439107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	35789.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.40671427197626	3.9771672449662	4.27642692282702	3.8432369937994	3.96319017620566	3.86762403490844	-0.979050435237905	0.056659361234198	0.306868930068307
Merged-chr2-163764014-3	chr2	163763506	163764506	+	835.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13767.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.27809309841384	6.57816588376952	6.48071696692793	4.82089312473618	4.23885553445873	4.65292314766544	-3.88759595609385	4.77524181607743e-21	3.67905852807566e-18
Merged-chr4-123952236-4	chr4	123951713	123952713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34780.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.09578084808908	7.03446422908679	6.98995764345632	6.93668334248777	6.67787972912306	6.70625795526311	-0.406609902963703	0.104672003467704	0.431742827766851
Merged-chr5-64718307-4	chr5	64717823	64718823	+	864.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-85200.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.86064815975626	5.16929104557162	5.26692390628873	5.09541629797537	4.8706748601649	4.9684680742689	-0.266731576386252	0.48953324059865	0.829739482756292
Merged-chr1-33908027-4	chr1	33907532	33908532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	-193.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.38544657460936	6.07298450112927	6.11907604505053	6.22244490905135	5.85984503352153	5.92521349174094	-0.330190296131441	0.284807855183686	0.682457480121006
Merged-chr11-115297606-4	chr11	115297098	115298098	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178035)	promoter-TSS (NM_178035)	-52.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	3.12018876237047	3.26742526313817	3.01969918584453	3.04550910515264	3.1260593402725	3.15278222051879	-0.159653914694749	0.807392537905401	0.954557080558103
Merged-chr1-67363892-4	chr1	67363377	67364377	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240850.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	2.95704912732288	2.90294714798211	2.90264494416315	2.67447633144811	2.71142905032891	2.85476134927072	-0.914421490321036	0.203874143872029	0.594065140719514
Merged-chr13-41080519-4	chr13	41080090	41081090	+	725.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145803)	promoter-TSS (NM_001145803)	-884.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	3.26839096195691	3.41568681606868	3.05011060105982	3.36249307896328	3.3573694522505	3.47821632192734	0.536878205026766	0.401479796165724	0.777568046382993
Merged-chr11-106669911-4	chr11	106669406	106670406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	45375.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	5.18235107750777	4.84636421319078	5.02237041404342	4.92704892190087	4.2819346744636	4.34908916683874	-1.06779089521338	0.0213339273632576	0.168535232395057
Merged-chr3-138143448-4	chr3	138142945	138143945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348196)	promoter-TSS (NM_001348196)	-3.0	NM_175389	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	8.36659880807193	8.8769205068819	8.40486924341576	8.4154136275001	8.86096498610558	8.43705642831138	0.0240529826367173	0.926499035646478	0.983531272827937
Merged-chr1-55506596-4	chr1	55506106	55507106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	MIR|SINE|MIR	100660.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.62231165865238	7.88530389816912	7.48529233278034	7.38262111418496	7.85181625937759	7.35744788226515	-0.173532894057978	0.519945400017479	0.846082496556008
Merged-chr7-34380503-4	chr7	34379994	34380994	+	927.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	9211.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	3.5707977042153	3.92749630952252	4.02286715846476	3.59856365257962	3.71560029646153	3.70493055141459	-0.572653087779308	0.305566575798406	0.701685763461674
Merged-chr8-105302017-2	chr8	105301517	105302517	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-3584.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	2.91419401737691	2.76172177442238	3.20080470969588	2.994661870357	3.34242359177729	3.53141890361508	1.47720318408095	0.04305030325315	0.260283925357336
Merged-chr1-151041180-4	chr1	151040675	151041675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47740.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	6.99777106646288	7.22618462518629	6.96511521292068	7.39256522916011	7.4556455362339	6.75869582409772	0.267732290518738	0.356749117120014	0.743448231367782
Merged-chr7-25712025-4	chr7	25711567	25712567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028771, exon 5 of 5)	3' UTR (NM_028771, exon 5 of 5)	6986.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.3120963246878	5.7137148822603	5.91360969751945	5.61117089607831	5.17796592140579	5.66705298884942	-0.316810197051434	0.400776449911953	0.776994031647378
Merged-chr15-101372169-4	chr15	101371660	101372660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2035.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	5.11518910900006	5.00533792020822	5.6663686665032	4.61903697078778	4.58145923054427	4.97975576844517	-1.19839182645943	0.00550562381880975	0.0655761422839374
Merged-chr15-7942791-2	chr15	7942291	7943291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	MusHAL1|LINE|L1	127241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.27218400477075	3.4865109122271	3.18409590178609	3.28731546028761	3.25220316847986	3.48301218521579	0.0494509707547768	0.937031855315929	0.986037792257163
Merged-chr10-121369590-2	chr10	121369090	121370090	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	URR1A|DNA|hAT-Charlie	4500.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.73511987802352	5.91131633071113	5.71184945123034	5.91416943739424	5.84139704049448	5.57580171565402	-0.00010074938136143	0.999746608272719	0.999955333581252
Merged-chr6-125145168-4	chr6	125144653	125145653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302779)	promoter-TSS (NM_001302779)	-71.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	6.26923284527657	6.19096035843602	6.24796686291542	5.87470772087482	6.05076005433401	6.32689235625698	-0.249345970722981	0.400030009238962	0.7763444374189
Merged-chr12-98268295-2	chr12	98267795	98268795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-340.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.13240920735936	7.09161805142681	7.30811816451737	7.17097736381568	7.52574097185874	7.35448340421793	0.279935461484371	0.256900773350037	0.654066444798662
Merged-chr4-118999822-4	chr4	118999315	119000315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	5.30638742979658	5.31879753189057	5.29329091298807	5.8071374819104	5.66805257816969	5.51323592597494	0.699082956859343	0.0343275073099838	0.226836342777091
Merged-chr2-166677297-2	chr2	166676797	166677797	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	36535.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.27476580030057	4.58099985306187	4.34621501197514	5.08676390790999	4.8968087616216	4.56704385476308	0.138428622505659	0.784742817379062	0.947746351052687
Merged-chr11-62553772-2	chr11	62553272	62554272	+	760.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002875)	TTS (NR_002875)	2041.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	5.30271794404644	5.25527658974227	5.14108257720473	5.27626913468717	5.22017620248665	5.39582720048096	0.105696822429545	0.760946185416939	0.941052126037375
Merged-chr1-92749601-3	chr1	92749101	92750101	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82044.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	3.14603369204441	3.11408487964359	3.01553260187026	2.93715449280215	2.89600383165441	3.14631211474441	-0.480384249888578	0.475826923134471	0.82218949187564
Merged-chr2-71209554-4	chr2	71209040	71210040	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2166.0	NM_001198875	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	2.71692519631596	2.67392217651133	2.92139394358536	2.63189117752297	2.62378680431963	2.76012793239185	-0.5441450087426	0.465022358780036	0.816716559287613
Merged-chr2-116990326-4	chr2	116989849	116990849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90197.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.56875652524015	7.18257394005912	7.24813782113732	7.3753840309621	7.39032143814655	7.34005372753902	0.0315279044728184	0.8977907589086	0.976170155203611
Merged-chr19-56746284-2	chr19	56745784	56746784	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	23912.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.08554035459795	4.93307409214156	5.22693531586756	5.12614749583875	5.10202667116763	5.61954547459003	0.434016989867564	0.263100439567158	0.661082058032528
Merged-chr13-9879500-2	chr13	9879000	9880000	+	714.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-114179.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.44822562344489	4.83101431525771	4.49424243810437	4.91620683017393	4.67822380072526	4.47215380451906	0.227405136518227	0.608628922722017	0.885006356798728
Merged-chr14-19987516-2	chr14	19987016	19988016	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10267.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.95041579705103	6.07531163860848	5.74943731038277	5.53799867698105	5.75711172496021	5.75896900660206	-0.454898932012368	0.150391944965874	0.517247822505929
Merged-chr11-80072491-3	chr11	80071999	80072999	+	786.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	8492.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	4.99426452920091	4.99712853614395	5.2208272028151	5.04086528401204	5.21521118168976	4.90498238837387	0.00980485917458454	0.979252202352761	0.995177657748265
Merged-chr7-24374096-4	chr7	24373585	24374585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3822.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	4.30518442330408	4.2507632797949	4.34166868216497	4.97288768864013	4.65192944222571	4.74121867026092	1.25973267243032	0.00353880738928858	0.0475467600917043
Merged-chr9-55272166-4	chr9	55271683	55272683	+	961.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	MTD|LTR|ERVL-MaLR	11442.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.0352647872857	2.90000961675201	3.017116083593	3.05300398835026	3.05738799788185	2.77405643348229	-0.0487024718927972	0.944885078589268	0.987875414328125
Merged-chr11-95259279-4	chr11	95258791	95259791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2238.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	5.47656244318273	5.52364533557746	5.69907990307611	5.34416840408125	5.12527569179722	4.99370354189048	-0.779690373799157	0.0276789786355761	0.198544916525213
Merged-chr10-41959515-2	chr10	41959015	41960015	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58867.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	5.00547606586023	5.33041571116507	5.65197838546711	5.57595813356811	5.55682549393978	5.61026676676535	0.455135896401476	0.211833061121515	0.604237268170409
Merged-chr9-53405285-4	chr9	53404799	53405799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029247)	promoter-TSS (NM_029247)	13.0	NM_029247	75311.0	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	4.33492555227915	4.12439566375212	4.33827128679412	4.33147318003525	4.42337491067707	4.44802415984054	0.358496710704527	0.424762149711562	0.792833924352381
Merged-chr13-76396116-4	chr13	76395610	76396610	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	11149.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	3.65283790378685	3.86161797683524	3.80759553789645	3.14808988339955	3.30999596308642	3.34578246433871	-1.93473011051688	0.00182785900733908	0.0288161962516904
Merged-chr7-19001678-2	chr7	19001178	19002178	+	729.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145579)	TTS (NM_145579)	-2387.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.87655297861897	5.81658941025321	6.40636732564349	5.94963476219951	6.16300242922714	6.20883632999963	0.10878428265585	0.74038268465621	0.934528157499283
Merged-chr10-60373106-3	chr10	60372607	60373607	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159572)	TTS (NM_001159572)	26256.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.1774640063163	3.87783493327826	4.36616561018843	3.89812651479618	4.04938980633736	4.09258008377148	-0.386103118915919	0.450084176374935	0.808117861931044
Merged-chr1-181245746-1	chr1	181245246	181246246	+	555.0	f0_balb.idr	Intergenic	Intergenic	-33768.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.92126987016256	5.22434742093847	5.02055660498432	5.0358550074926	4.77818144050253	5.33782132729364	-0.0162642528891765	0.967736995115182	0.992594535508871
Merged-chr8-13868811-1	chr8	13868311	13869311	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	-830.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	2.47783358719718	2.46991097757617	2.58890135382327	2.42179129326291	2.49960019628711	2.34058257449655	-0.518377159970079	0.523733910024537	1
Merged-chr11-82907842-2	chr11	82907342	82908342	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145431, intron 2 of 12)	intron (NM_145431, intron 2 of 12)	553.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	3.45224729840035	3.41354065822228	3.28991390419849	3.48300127233201	3.24541441289311	3.41958374613914	-0.0336530543085165	0.955538506979074	0.989763164889919
Merged-chr6-135007834-4	chr6	135007343	135008343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3769.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	6.69121137054034	6.82658919619984	6.27023742591429	6.24064408521892	6.36954692577903	5.98133989618503	-0.665423714698443	0.0312488654309657	0.21402219069716
Merged-chr1-156028551-4	chr1	156028057	156029057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	6260.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.94711592158783	7.03389307824742	6.97821410822997	6.9333346671183	6.88705401178447	6.89650185205083	-0.126083610101942	0.598666661452943	0.880808927175713
Merged-chr10-75227205-3	chr10	75226718	75227718	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	MIR|SINE|MIR	14828.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.76032201262794	4.83986863654072	4.94870008783976	5.25087020730532	5.12954541496141	5.01402904171773	0.632017894271969	0.091252248281184	0.401997770565695
Merged-chr4-135945907-4	chr4	135945395	135946395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-553.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	7.97137989938836	7.7198807744664	7.56555992247629	7.94143253787973	7.82568390786926	7.65152501492044	0.065820886850474	0.784287760063418	0.947513080979134
Merged-chr17-69226706-2	chr17	69226197	69227197	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	50509.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	4.98748041592132	5.27787890854802	4.8296330408594	5.2999344683349	5.21867487047613	4.68043127058751	0.106381542832916	0.801520962593541	0.952995299515894
Merged-chr19-16009419-3	chr19	16008915	16009915	+	756.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	MTD|LTR|ERVL-MaLR	24340.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.54777061177356	5.00651126234447	4.94789815030695	5.16795957941408	5.20294789387212	5.44969610026648	0.89804973468031	0.0240426935597709	0.182315177774667
Merged-chr8-117305583-4	chr8	117305091	117306091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-43579.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.94895147262788	4.7676828559553	4.82752673376734	5.11054998082872	4.92214933198068	4.89357320919735	0.283132679419716	0.460953337976229	0.814802506471053
Merged-chr2-160010746-5	chr2	160010223	160011223	+	807.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5930.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.38721212532794	6.34392480221801	6.59097073203735	6.06726578367577	5.89644761730133	6.18036065043005	-0.662487091970029	0.0213342659698243	0.168535232395057
Merged-chr10-41518701-4	chr10	41518221	41519221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-779.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	8.02398829940713	8.14004082689925	7.6154064409761	7.89905059246973	8.29284949725217	7.7937524525666	0.0971046197599788	0.716370407456542	0.926569584146506
Merged-chr8-46934388-4	chr8	46933884	46934884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52503.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	8.67994869699609	8.52683226226378	8.24110732270536	8.60990230599996	8.8052042929046	8.28997459304537	0.12715173055677	0.607392418964333	0.884581207370863
Merged-chr9-116172476-1	chr9	116171976	116172976	+	583.0	f0_balb.idr	intron (NM_009371, intron 1 of 7)	B4A|SINE|B4	2887.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.5984122336211	4.30940275987643	4.3673625599076	3.92476055625762	3.63795778787884	3.91449240602822	-1.80606361411842	0.00042428139015021	0.00922728852891236
Merged-chr8-123343623-4	chr8	123343095	123344095	+	954.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	10882.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	5.77036716112289	6.04443453701132	5.25029130886579	5.77415556525723	6.14458256898768	5.88975215921008	0.364917953286769	0.32626148035554	0.718588773059735
Merged-chr1-143956369-3	chr1	143955883	143956883	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47766.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.3730574961138	2.92744987601471	3.13754258056899	3.05014010746542	3.05347121247452	3.63030541675885	0.440291355854387	0.540230091099786	0.85632302227606
Merged-chr7-140946102-2	chr7	140945602	140946602	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145387, intron 10 of 13)	intron (NM_145387, intron 10 of 13)	4137.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	4.22984925452898	3.48175027011627	3.72170185795506	3.62962358622956	3.7653621382469	3.99301148677808	-0.170963127179988	0.778411947490713	0.945448867043224
Merged-chr9-44461448-4	chr9	44460984	44461984	+	881.7589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-6717.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	7.25298946406104	7.29155917802544	6.99862406459109	7.38523240640915	7.70270523376244	7.17810734842908	0.380452475938693	0.151551797023512	0.519007364149172
Merged-chr5-43355377-4	chr5	43354864	43355864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120010.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	6.08243108095365	6.02977450479571	5.67243463524577	6.36054702426196	6.20374802885585	5.58284047265365	0.262244834417418	0.462914100985608	0.815511746112333
Merged-chr2-27028789-4	chr2	27028284	27029284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-786.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	7.13287491772464	7.06229551640588	7.04519216650777	7.18030272594625	7.54830487680424	7.24140554610861	0.388442094883877	0.118006676881611	0.458793550601116
Merged-chr3-88745606-2	chr3	88745107	88746107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26992.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	6.09993174048663	6.41184283604329	6.10841804448381	6.32043638197385	6.444918683183	5.92813153505641	0.0699065713846923	0.823105052709917	0.958214218900685
Merged-chr9-44646203-2	chr9	44645703	44646703	+	689.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27030.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	2.41832939519115	2.31366953423062	2.50531229458908	2.48996365959618	2.30848950985103	2.57912527211511	0.295400026468008	0.718399810127138	1
Merged-chr11-118236724-4	chr11	118236212	118237212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11880.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.78170055340079	7.57119590442911	7.71581435953434	7.68881609304994	8.15238030799917	7.63461397114073	0.237112733511824	0.352188514722078	0.739888459678721
Merged-chr11-118424866-3	chr11	118424371	118425371	+	876.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3586.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	4.32330906909654	4.19775947715727	4.16605519987628	4.22522459505757	3.95969610809194	4.40923206154829	-0.0938058796005472	0.846523890827268	0.964033094055515
Merged-chr7-49007097-4	chr7	49006583	49007583	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	48010.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.88150496710126	4.57556625739406	4.38473977174906	4.29030250425781	4.42832855593602	4.26350616721034	-0.759672781101454	0.097246226533753	0.415829701465976
Merged-chr1-156718601-4	chr1	156718121	156719121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145413, intron 1 of 7)	CpG	289.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	5.90425316371556	5.77014003274671	5.89637053081267	5.98882828486123	5.73629970219468	5.83561690233822	-0.0018348549054334	0.99520751507536	0.998961028701257
Merged-chr19-46356482-2	chr19	46355982	46356982	+	700.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	-398.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	3.55233736919876	3.38153634273963	3.67613312942561	3.77819722886445	3.68817422312496	3.53123120037886	0.482535449149989	0.397068986673201	0.773969159231945
Merged-chr11-70239093-6	chr11	70238534	70239534	+	919.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173742, intron 1 of 2)	intron (NM_173742, intron 1 of 2)	818.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	8.01172415933484	8.24928947263803	7.66638996202513	7.94249044438014	8.16621274018197	8.1255914097816	0.10722432971527	0.667391138745745	0.908729013673458
Merged-chr7-98703927-1	chr7	98703427	98704427	+	773.0	f1_balb.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	680.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	7.06548256753812	7.11271572842564	6.67498786093356	7.08976606997681	6.86601485858464	6.7998610758257	-0.0755105704492327	0.780039786116836	0.945949149660645
Merged-chr3-107110420-4	chr3	107109933	107110933	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	8866.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.07648896091118	5.39850232444409	5.29681664767971	5.58364938177688	5.46449998745989	5.39194816665335	0.431447282323136	0.214782176805404	0.607977993080214
Merged-chr12-17591433-1	chr12	17590933	17591933	+	820.0	f0_c57.idr	Intergenic	MYSERV-int|LTR|ERVK	46560.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.21446381935187	2.4527311493337	2.26824166716711	2.57734776278269	2.54239344619478	2.85232724762853	2.14577591193582	0.0187149120553759	1
Merged-chr12-3885368-2	chr12	3884868	3885868	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-6376.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.41970446569248	3.06205502268071	3.70371622249688	3.92754150466049	3.20408399040112	3.6737423754043	0.753763493695452	0.280171820533576	0.677926210657904
Merged-chr15-53130920-4	chr15	53130414	53131414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215269.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.84492045992985	4.61115654364936	4.51816660525016	4.22643758941924	4.40157088788637	4.26848860159595	-0.915181247266196	0.0401311526323162	0.249382595088108
Merged-chr17-25797155-4	chr17	25796653	25797653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133719)	promoter-TSS (NM_133719)	-108.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	3.03735841989308	2.92627200403437	3.40747847088939	3.26059335331995	3.21756440926947	3.26351655393984	0.48509664069636	0.468699313104384	0.818694631884688
Merged-chr13-110598587-4	chr13	110598034	110599034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203490.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.88563322167716	6.00925165876578	5.28003077472411	5.27417846844974	5.53451889392134	5.16445858795399	-0.804973561875649	0.0367235586554955	0.235924480281537
Merged-chr11-51928600-2	chr11	51928100	51929100	+	581.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-39031.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	3.38586322661913	3.11677049987949	3.24239329212002	3.64004944686386	3.35078541415033	3.69595166182919	1.18992502258864	0.0579485771700048	0.311048846252846
Merged-chr11-116396804-2	chr11	116396304	116397304	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 1 of 18)	B4|SINE|B4	16228.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.39398084035921	3.26846758618946	3.42275219991113	4.52544013076585	4.17698326194035	4.20074052856069	3.37528161717616	7.00936900626958e-08	5.17971204505932e-06
Merged-chr14-13959439-2	chr14	13958939	13959939	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	intron (NM_001359900, intron 1 of 8)	1874.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	2.35024089009732	2.38289375707752	2.53641909330946	2.63335251079738	2.06783685027416	2.41800322722458	-0.161857526367532	0.865937723135777	1
Merged-chr5-102571636-4	chr5	102571160	102572160	+	770.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	90269.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	2.85201764515717	3.28781690302664	3.1066622681573	3.14029514772453	2.86473877744779	3.23577873586819	-0.0472317401679572	0.947088426136939	0.988008807662239
Merged-chr16-18427427-2	chr16	18426927	18427927	+	717.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007744)	promoter-TSS (NM_007744)	-711.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	3.89489344459116	3.82104955268287	4.04122058405128	3.88330210081479	3.71320131393128	3.7154514638854	-0.459575970106971	0.380155879832642	0.762316998936778
Merged-chr6-114259511-2	chr6	114259011	114260011	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23124.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	6.0684728622136	6.04200068504418	5.69783574742877	5.70468164321439	5.87473501478624	5.45991461524336	-0.44824748883309	0.177741016011983	0.55882263155115
Merged-chr3-96578693-2	chr3	96578193	96579193	+	798.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 7 of 7)	intron (NM_027241, intron 7 of 7)	-11892.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	5.74482686507835	5.49111785689688	5.7983718613576	5.73412962503479	5.51517762576537	5.62787131053802	-0.098312868313556	0.763421363412759	0.941793063578371
Merged-chr2-154613941-1	chr2	154613441	154614441	+	1000.0	f1_balb.idr	intron (NM_199304, intron 1 of 14)	CpG	573.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	6.93373177222385	7.04312885757965	6.95222217479459	6.7591311963137	6.57620437555776	6.77952847042832	-0.430389065701423	0.0852858657041737	0.38650944002674
Merged-chr15-58325596-4	chr15	58325117	58326117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1448.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	5.41649938333056	5.44324741782592	5.40220735770125	5.32007378902878	5.53607340495058	5.24242101184324	-0.0729117821963714	0.830985835545988	0.960370002015736
Merged-chr2-124858764-4	chr2	124858256	124859256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205175.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.75170152577254	3.65573004555925	4.0804411563524	3.61268717583918	3.43112531360145	3.45637006966242	-1.14376747536263	0.0488903578377827	0.280922097513771
Merged-chr1-136559953-4	chr1	136559453	136560453	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64948.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.28833429711269	5.40567523260791	5.38147177946184	5.80039122019012	6.32782945004159	5.73935440628266	1.17280830248556	0.000779733800463516	0.0148962676530293
Merged-chr12-8493527-4	chr12	8493002	8494002	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6507.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.94359274509938	2.67336947372605	2.94987323743482	3.02960474385493	2.77917879311753	2.96319593835603	0.321035604340652	0.656779672998144	0.904693205515276
Merged-chr13-59824178-2	chr13	59823678	59824678	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-1031.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.1425975478525	4.3580417792566	3.7512233504775	4.30701393005236	4.19949374320852	4.197388373291	0.319466941342602	0.541520598758034	0.856856498945272
Merged-chr9-65075335-4	chr9	65074833	65075833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 17 of 20)	intron (NM_028906, intron 17 of 20)	-26153.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	5.14417667061109	5.40587287333163	5.51232287893183	5.15891984396446	5.27401297534488	5.52014988553482	-0.0756518004908225	0.83405435179531	0.961205419413942
Merged-chr16-4965110-2	chr16	4964610	4965610	+	634.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028301)	promoter-TSS (NM_028301)	822.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	5.25830150924801	5.05670674426565	4.83392479233966	5.06954387381609	4.56978215109032	5.14997929559539	-0.265521705914892	0.531201118435385	0.851485236950839
Merged-chr3-152556642-3	chr3	152556143	152557143	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-110270.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	2.74620404690373	2.80707236642947	2.88497244395897	2.44249871208528	2.66958941212523	2.52253147312583	-1.45174331974015	0.0739220953311624	1
Merged-chr8-71568086-1	chr8	71567586	71568586	+	892.0	f1_balb.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-785.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	5.11880986398766	5.15146249899534	5.11240194320499	4.45642280154821	4.38661723123606	4.6713684262803	-1.45801905756457	0.000269544996517326	0.00638147339985514
Merged-chr9-21322697-2	chr9	21322197	21323197	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	1978.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	3.64662323630732	3.55545850062279	3.97139769652894	3.84723564969672	3.5301917231589	3.90112721080113	0.114454252847829	0.840902136015645	0.962832831784718
Merged-chr5-140390990-3	chr5	140390479	140391479	+	623.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1671.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	5.18069374629323	5.22954817002883	5.64661408522363	5.06618254546642	5.25758024121565	5.70757649500328	0.00600499668276358	0.987871118534853	0.997247187631499
Merged-chr5-3432758-4	chr5	3432255	3433255	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	88862.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.68241311962844	5.90983643572875	5.64938875725345	5.83676573981023	6.28210323092759	5.92215278438143	0.494528346006542	0.129277667753278	0.480950379076043
Merged-chr10-128909271-3	chr10	128908777	128909777	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282966)	promoter-TSS (NM_001282966)	-68.0	NM_001282966	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	5.1495855920922	5.18423510332338	4.84319025958932	3.99251713829128	3.73339129390671	3.80969534519455	-3.45140986848211	7.34756914987305e-11	1.00061625830219e-08
Merged-chr5-29994631-2	chr5	29994131	29995131	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18483.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	3.60783814413117	3.8122939566316	3.69496517910178	3.86213737011861	3.70199717955199	3.91642378637788	0.373575284783682	0.485805289969968	0.827573679263522
Merged-chr10-20314134-2	chr10	20313634	20314634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	intron (NM_001025392, intron 1 of 12)	1665.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	5.56433859629986	5.22298322431034	5.16989488874645	5.68590690340422	5.61169080535035	5.43434266926905	0.472274002132256	0.179494969019911	0.561060006844806
Merged-chr13-46736509-2	chr13	46736009	46737009	+	939.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8660.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	7.21814724647124	7.67598482295498	7.41547372557948	7.27042974720238	7.69407236858022	7.44095972967222	0.0477322867223277	0.857142192300643	0.966690212131128
Merged-chr7-101050944-4	chr7	101050450	101051450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38897.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	5.26609643368381	5.01717873747707	5.10700008252476	4.58052444079956	4.44809438123145	4.74150990995463	-1.25199931655046	0.00173842941910086	0.027738248780676
Merged-chr2-27760257-19	chr2	27759693	27760693	+	900.600891	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	49610.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.39166428786052	5.42450361427224	5.50517875646488	5.17880836805325	5.19006176544885	5.86066061167534	-0.00365450302288972	0.992408793584912	0.998523796268552
Merged-chr17-79786861-4	chr17	79786375	79787375	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-71834.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	2.80965677764694	2.79871130385105	3.11062046372895	2.85556455748687	2.82668692006397	2.89589104583641	-0.240968742060868	0.734202616665145	0.932325051544019
Merged-chr12-3806083-2	chr12	3805583	3806583	+	732.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007872)	promoter-TSS (NM_007872)	-897.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.36737943305232	4.30458472225828	4.6849174849602	4.57373337308537	4.54612673749885	4.51466876891862	0.238938585605052	0.584856423860853	0.874754719025748
Merged-chr7-145124462-3	chr7	145123962	145124962	+	752.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83657.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	2.679085598448	2.60456688222178	2.8278524392243	2.59179984107606	2.55679863569384	2.78228511657007	-0.333682740119704	0.659381092094766	0.905402077619558
Merged-chr6-5044597-3	chr6	5044101	5045101	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	141281.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	2.96533751894529	3.44085448948602	3.16775778326369	3.08177710631166	3.27208713207157	3.46061369101557	0.270812678774476	0.692334109417539	0.918648603655029
Merged-chr11-20215456-3	chr11	20214954	20215954	+	811.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	14042.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.57555246003743	4.41230975978366	4.37495907084749	4.20529371376777	4.19786855267744	4.56583007776021	-0.357893675579445	0.434308504607676	0.798342379107878
Merged-chr13-45391721-4	chr13	45391244	45392244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2002.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	7.94375951767372	7.98249120845062	7.60672604593453	8.03936347831199	8.20388752738562	7.82900548367706	0.251972712934986	0.298236041460287	0.69500092474273
Merged-chr3-88513726-8	chr3	88513203	88514203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.84748383589192	4.23188067750392	4.20033839332033	4.62138150553589	4.27955405149597	4.27131189538998	-0.174124360741934	0.731358550356704	0.931363959034745
Merged-chr12-100005483-4	chr12	100004987	100005987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	40988.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.38661075326324	7.44163955644257	7.13525853010348	7.46080969592855	7.56322778935302	7.07211391135664	0.0859893722173191	0.742208734346537	0.935165347690577
Merged-chr12-113000806-4	chr12	113000297	113001297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028193)	promoter-TSS (NM_028193)	-176.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	6.74124531789392	6.85139440998719	7.07813879989969	6.95089580118024	6.85503635210225	6.77711326400582	-0.0377640755531394	0.883111463433893	0.973347392063704
Merged-chr6-83317605-4	chr6	83317060	83318060	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008638)	promoter-TSS (NM_008638)	44.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	4.64182694917879	4.40428409106893	4.28462780200291	4.83223554738457	4.68352667191452	4.35524188576088	0.453633915419188	0.319108497372879	0.713083570990508
Merged-chr9-31211883-4	chr9	31211392	31212392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-44.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	5.93457368114805	5.97602225043324	5.94309295942081	5.74358586033521	5.56130133099981	5.98122730441884	-0.344048236368329	0.272424923020272	0.669663338532819
Merged-chr10-95919032-3	chr10	95918493	95919493	+	764.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21670.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.13343052240242	2.87668833069382	3.06062799493613	3.01235893098916	2.93421288464245	3.13255058769741	-0.0134404109159116	0.984174307705847	0.996497594222224
Merged-chr15-103163392-4	chr15	103162878	103163878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027885)	promoter-TSS (NM_027885)	-94.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	4.40992785241301	4.42323034406777	4.5944588462886	4.76740697116951	4.43272698976272	4.58007839118018	0.308747831686998	0.475086989635477	0.821727753368561
Merged-chr10-117225252-2	chr10	117224752	117225752	+	814.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026570)	promoter-TSS (NM_026570)	-745.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	4.48443294505127	4.35637641742708	4.76699079708119	4.72784782891158	4.79735324357905	4.6402435053363	0.464026565481753	0.274833608587422	0.672203259945391
Merged-chr5-135149501-4	chr5	135149006	135150006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-205.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	7.26669392832997	7.4266777463325	7.2420115614931	7.5927823158438	7.65543769143093	7.41268332871125	0.361723237997298	0.120959312817687	0.465085864763572
Merged-chr11-75732814-4	chr11	75732326	75733326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009536)	promoter-TSS (NM_009536)	-61.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	6.91314373783938	6.9325985403512	7.0430015551354	6.53606920913308	6.58255022889161	6.67363377941559	-0.570753109352087	0.0223037675004296	0.173525188048223
Merged-chr5-31514243-2	chr5	31513743	31514743	+	884.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028150)	TTS (NM_028150)	12519.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	3.6320960483769	3.56634495013778	3.72452339374813	3.49068323626854	3.72254698973427	3.47400601508732	-0.219173095575673	0.700509750175369	0.920919335036368
Merged-chr19-10291319-2	chr19	10290819	10291819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	13558.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.58309381905343	4.76043443935112	4.44661203361463	4.32144159606211	3.75287829984471	4.33883181331383	-1.1833864571512	0.0205403733552825	0.164275604204762
Merged-chr9-108336301-3	chr9	108335794	108336794	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 5 of 5)	B1_Mus2|SINE|Alu	-2786.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	3.97248223122204	4.22678533930731	4.54368843002368	3.69486431790448	4.22076763739074	4.33779565372879	-0.412468417843132	0.459216888176488	0.81350236795577
Merged-chr10-88332554-4	chr10	88332043	88333043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	24532.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.25438157526878	6.23785342043655	6.28547022841276	6.38603262834667	6.79652629128466	6.34570193493508	0.459627013065749	0.113570355964265	0.450187448195983
Merged-chr6-119373431-4	chr6	119372855	119373855	+	870.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	15379.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	4.66053271023068	4.76911612311673	4.88489409257561	4.70257762685427	4.61866846919208	4.94863359746916	-0.0371378288516798	0.927253661310343	0.983584626679457
Merged-chr4-32570157-4	chr4	32569645	32570645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	1517.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.65336564450423	8.78165409253584	8.46358985914516	8.46237365932181	8.71752950746947	8.33565959182553	-0.169076633520368	0.456885027319352	0.811936469035681
Merged-chr4-128661337-4	chr4	128660840	128661840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	6638.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.78603215487681	6.30455867844928	6.05632589471978	5.60319911205706	5.90581697729693	6.09541136018235	-0.331579136670063	0.322835377785388	0.71622978868066
Merged-chr2-173356242-3	chr2	173355725	173356725	+	930.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-79692.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	2.9704474080483	2.95505836966444	3.02011310554468	3.29952892077211	2.95146215737268	3.09340029052061	0.63284206263654	0.348437693938933	0.736287772996185
Merged-chr5-142460474-2	chr5	142459974	142460974	+	623.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-3457.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	5.52999811872942	5.66655343194386	5.91698123211102	5.5278065023594	5.41333202174686	6.17915880981263	0.0593203354869739	0.875719395178408	0.971117457237427
Merged-chr12-75511720-4	chr12	75511239	75512239	+	910.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 3 of 13)	intron (NM_012024, intron 3 of 13)	84461.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	2.88973115309233	2.98182269884973	2.95884018504402	2.86987083676601	2.67316493133805	3.03103227291246	-0.416469767569176	0.561312001361096	0.865407801976397
Merged-chr3-96569392-2	chr3	96568892	96569892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2591.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	3.69176981258027	3.69175556109706	3.66201976336684	3.43821489484763	3.54120348509104	3.87862770681334	-0.200342280229363	0.724614914312048	0.929435720851808
Merged-chr5-129999343-2	chr5	129998838	129999838	+	835.650024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357026)	TTS (NM_001357026)	3711.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	3.08085130436653	3.03472978102495	3.25398794557372	3.22656815317287	3.41844475784873	3.15160150615018	0.659389206476496	0.307490526523736	0.703618285922147
Merged-chr6-38805822-3	chr6	38805311	38806311	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	31500.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.19015421254462	6.05880610199432	6.17893997364613	5.73712832689636	5.79543616721711	5.807271003061	-0.633083537418049	0.0308868968451265	0.212680975892857
Merged-chr17-57011426-4	chr17	57010912	57011912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133801)	promoter-TSS (NM_133801)	-124.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	7.90351312395953	8.12385102543483	7.42930105168656	7.52323585241349	7.75718081202026	7.55011483260331	-0.348347543638928	0.195631242207582	0.583395666913835
Merged-chr13-119610806-2	chr13	119610306	119611306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039244)	TTS (NM_001039244)	-13013.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.89328224560176	5.18320294202734	4.58486969603313	4.25511415563141	4.49683679813816	4.88699798909699	-0.816824781644015	0.0813990942879052	0.377413119219214
Merged-chr6-118137319-4	chr6	118136826	118137826	+	812.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	1504.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	2.84936191056377	2.7434801814588	2.88180517858124	3.00029936279026	2.74598464977742	2.63456014408221	-0.0979299716108206	0.895305733973608	0.975665889379756
Merged-chr3-148960436-2	chr3	148959936	148960936	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5801.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.93791017764725	6.09613338256119	5.9078081680116	5.45730438351155	5.51856389142801	4.92395974210322	-1.18027574929098	0.00130146359110029	0.0221526718841994
Merged-chr17-13540908-2	chr17	13540408	13541408	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	13186.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	2.25789208945347	2.19267558727695	2.43858302840819	2.70421463847917	2.36322928971375	2.64123958750785	1.81891502683604	0.038626100094482	1
Merged-chr11-120237954-2	chr11	120237454	120238454	+	816.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	5007.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	3.82211831323539	3.86807299048869	3.91763141617841	4.41660873043153	4.37737618341312	4.52885913584916	1.63145026016461	0.000680920662669441	0.0134070152625175
Merged-chr15-12233261-4	chr15	12232743	12233743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 3 of 15)	intron (NM_001356498, intron 3 of 15)	28215.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	5.57193992548408	5.53605703666135	5.16075848749229	5.32676898120781	5.06525594190693	5.53614139128939	-0.26456118430172	0.477322374450144	0.823237639056184
Merged-chr11-118219064-2	chr11	118218564	118219564	+	626.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-6322.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.48820014387105	3.77682362554632	3.73589108841644	3.7347621373908	3.49214229072825	3.85424347383666	0.0752674799725439	0.894700888605899	0.975576532925631
Merged-chr17-47765519-2	chr17	47765007	47766007	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-20237.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	4.48318135851739	4.89266366999018	4.48920298443449	4.61249251831885	4.93805870507375	4.80440266808348	0.346926792031157	0.425591278899173	0.793186380294816
Merged-chr2-125123188-4	chr2	125122714	125123714	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162418, intron 1 of 14)	CpG	446.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	5.92878013598646	5.54961147264614	5.35703350538363	5.79028388878331	5.55141771547335	5.45413266298443	-0.0663580217345632	0.852680228399113	0.965500666049308
Merged-chr9-100434473-1	chr9	100433973	100434973	+	695.0	f0_balb.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	52000.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.45796836384047	4.73938831992422	5.08511823345514	4.53597603091552	4.28625694797391	4.63705820956608	-0.695065905865659	0.129695594067154	0.481729800515123
Merged-chr11-93821718-4	chr11	93821248	93822248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	64018.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	6.03700434326037	5.89146116090221	6.10188134202943	6.04307608334153	5.84092245707098	6.1620945653003	0.00671332766589318	0.98222370100555	0.995992226862322
Merged-chr11-103053387-1	chr11	103052887	103053887	+	765.0	f0_balb.idr	intron (NM_008707, intron 4 of 11)	B3|SINE|B2	24844.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	4.06548649175074	4.18686356729407	4.36708971342303	3.96690048768899	3.8093602402912	4.03994041776169	-0.795956594893423	0.109303010266144	0.441756599874941
Merged-chr10-83946721-4	chr10	83946226	83947226	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153971.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.50968910522101	4.64762584087587	4.22427374944788	4.41157080280712	4.27473540419195	4.14352105967811	-0.510072911976504	0.274381311984185	0.671721462492876
Merged-chr1-134405989-9	chr1	134405600	134406600	+	998.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355133, intron 1 of 8)	CpG	319.0	NR_149307	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	6.69513915857438	7.09058750906532	7.08196058777007	6.80614665809632	6.81170946165238	7.02610154372472	-0.132463210767053	0.620748100955988	0.890308839459615
Merged-chr2-103785952-4	chr2	103785456	103786456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	11122.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	5.21471298648419	5.57713823358227	5.18806828074514	5.35943167566029	5.44714786855578	5.3193462772296	0.0611886956333119	0.863866119597391	0.968269312109804
Merged-chr17-31081737-2	chr17	31081237	31082237	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	24043.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.56063378725911	5.46729424758245	5.46530173790782	5.50474311914474	5.899157414574	5.52869492379708	0.319136791379355	0.345426784793116	0.733801524395966
Merged-chr13-67268728-3	chr13	67268220	67269220	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155551, exon 1 of 6)	non-coding (NR_155551, exon 1 of 6)	274.0	NR_155551	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	6.97560434734337	7.35464432025779	7.00535730642896	6.86322139568222	6.839541183292	6.65182514930895	-0.513915209501222	0.0522713851719365	0.292278571156945
Merged-chr4-114934897-2	chr4	114934397	114935397	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-8884.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	3.01547051303426	2.60195271979852	2.71872736574221	2.90610669771528	2.86630616108146	2.91919017388351	0.502562543779948	0.504246701653282	0.837539115920757
Merged-chr16-38550211-4	chr16	38549688	38550688	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001300827)	promoter-TSS (NM_001300827)	68.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	3.91972992054468	3.91452440532268	3.93686829295741	4.22708109226749	3.93828140023273	3.79657671335158	0.243100655012716	0.636941696736417	0.897256731014262
Merged-chr1-181012733-2	chr1	181012233	181013233	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	RMER10A|LTR|ERVL	4836.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	3.41254788307372	3.44216167718123	3.70796028897321	3.54802823811231	3.41845724019337	3.91608206728065	0.401981796995811	0.502165136946968	0.836335475972925
Merged-chr2-153557041-2	chr2	153556541	153557541	+	793.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27070.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.20862312241113	3.5186118219338	3.16140726996808	3.6478800935081	3.61339098465974	3.64197394659446	1.18189016090558	0.059263606971463	0.315355004724787
Merged-chr6-50175014-2	chr6	50174514	50175514	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361247, intron 6 of 12)	ID_B1|SINE|B4	64154.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	3.17664481953664	3.12153752576666	3.10872901238619	3.23859038544712	2.95084674037641	3.35018170329385	0.199149429973438	0.763631379655959	0.941793063578371
Merged-chr4-135256750-4	chr4	135256248	135257248	+	916.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	16012.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.54471076685835	5.74399996092913	5.56195981456069	5.27042114444336	5.2395755015616	4.91897471515164	-0.895449931167492	0.0119637674897111	0.114042979182481
Merged-chr2-124704392-4	chr2	124703910	124704910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	50829.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.28056401675464	7.16700232181187	7.27526869963813	7.4502637897927	7.40489807639648	7.39883366634298	0.26436748746678	0.243105268043041	0.640367862483409
Merged-chr18-35022469-4	chr18	35021966	35022966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68115.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	5.63359927687099	6.23060588341682	5.59498695995089	5.55577287846734	5.34726628051667	5.24300011250017	-0.8768097923491	0.0183815075220259	0.152941212821122
Merged-chr1-134100197-2	chr1	134099697	134100697	+	618.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11045.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	5.94694747311555	5.80224871782754	5.40063654433316	5.45247335812542	5.56966993367172	5.58635869122809	-0.393864944706843	0.249155817890849	0.646134245609601
Merged-chr7-28373865-3	chr7	28373342	28374342	+	993.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	5.74356111926436	5.42992525389656	5.39817233355489	5.56642227585888	5.52157466602906	6.08177526407542	0.365834639390546	0.313465786794407	0.708061492184189
Merged-chr11-49847490-4	chr11	49846970	49847970	+	644.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	719.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	6.74402104339326	6.85144061894385	6.76523291290757	7.38953986176235	7.32315802810345	7.43837884201032	0.895378043967151	0.000156184762304626	0.00410610480311004
Merged-chr11-48815653-2	chr11	48815153	48816153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	1738.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	5.32716728329898	5.1881568377876	5.78601765650579	5.59480050254244	5.61589846309748	5.67570726847599	0.34885262831787	0.32776054612322	0.719913016195391
Merged-chr7-28808398-4	chr7	28807903	28808903	+	954.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2487.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	7.71717974223655	7.75718742997637	7.59962037205158	7.65974546384802	7.77023921927005	7.90371771246522	0.118408805380544	0.594710248644828	0.87924255733265
Merged-chr4-101657401-4	chr4	101656888	101657888	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 3 of 3)	(A)n|Simple_repeat|Simple_repeat	9605.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	6.15445027188009	6.72222021749891	6.71340158878341	6.15768878330984	6.7558994440944	6.77196576812941	0.0615595575168953	0.853686625744755	0.965759690490667
Merged-chr6-123175539-6	chr6	123175077	123176077	+	878.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004159, intron 2 of 5)	intron (NM_001004159, intron 2 of 5)	2554.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	6.21141028436331	6.15226248118605	5.9564671619067	6.1233315139556	6.419346869236	5.9688679931376	0.135380849966658	0.658449058175602	0.905014667687917
Merged-chr3-60486103-4	chr3	60485576	60486576	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	13246.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.25798773254548	5.24039608071541	5.345632888644	5.91191092823938	5.93482908143757	5.82849179393833	1.15973664561604	0.000257690892825681	0.00616147810639061
Merged-chr10-120113025-4	chr10	120112515	120113515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-50.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	6.87270252078134	7.08871768135357	7.06230544223245	6.94026200382828	6.9720509558396	6.85890133303321	-0.125056800428793	0.611037008261233	0.885863926067525
Merged-chr9-118877828-2	chr9	118877328	118878328	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-48708.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.10544292235359	2.13856832831173	2.27502597991301	2.00790169917285	2.00678530196442	2.08900138769814	-1.07580063806393	0.240893301795617	1
Merged-chr12-85468876-4	chr12	85468357	85469357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5033.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.53156084425993	7.51777469578252	7.14393525367676	7.12362891191579	7.25645703883846	6.9860845469775	-0.425944872462439	0.0948186363772633	0.410500617367785
Merged-chr2-29425598-2	chr2	29425098	29426098	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290489, intron 2 of 6)	intron (NM_001290489, intron 2 of 6)	47084.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	3.01317091325644	2.90251876659339	3.22419068928049	3.09338741165685	2.81996697868034	3.07138528965542	-0.234807010477722	0.735230579186697	0.932619876411523
Merged-chr17-35869671-5	chr17	35869213	35870213	+	895.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3098.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	5.88718850168047	5.80825450044287	6.40437815822466	6.20748165796882	6.29050129147738	6.49741611854155	0.482190452151382	0.134267425953284	0.489993860307513
Merged-chr11-54628526-4	chr11	54628047	54629047	+	943.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	32401.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.15178653942613	5.97870260232098	5.78035585248489	5.97589152784272	6.29687117318651	6.39047086856656	0.412025390178601	0.18608557640489	0.570600259489168
Merged-chr13-32935119-4	chr13	32934610	32935610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30403.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	5.33951080876329	5.48762767478137	5.04444851403078	5.24531391455139	5.45252991916018	5.14726009867695	-0.0344221700406939	0.925831447734312	0.983305773102619
Merged-chr18-54971499-4	chr18	54970992	54971992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	Lx5c|LINE|L1	18688.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.3071969359504	7.47910629194402	6.95884103996617	6.70768304045809	6.96377426541402	6.82363323777268	-0.660266256241456	0.0143918220520739	0.129084265313028
Merged-chr5-18013842-1	chr5	18013342	18014342	+	705.0	f0_balb.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51272.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	7.06526851152174	6.94146367628717	6.82434072027827	6.90845781124941	7.16744944056639	6.78944456854602	0.0356930708442196	0.89139031240293	0.974810545608534
Merged-chr18-34888706-4	chr18	34888216	34889216	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27509.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.14910020320742	3.94623341539806	3.92226987346167	4.08721784744889	4.08696390087446	3.83391549635898	0.00395620171145598	0.993768876175112	0.998777772262979
Merged-chr6-94163256-5	chr6	94162743	94163743	+	884.5499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	74199.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	4.25210449204162	4.3698046000177	4.09295451428471	3.74713151898073	3.57891135821199	3.80818294704674	-1.7027384544156	0.00114517222382596	0.0200057716565422
Merged-chr1-135148293-2	chr1	135147793	135148793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1459.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	5.64524196833788	5.66625510305343	5.66201189926019	5.79397027702461	5.76053727424214	5.55532450926181	0.105630015252118	0.736507346246795	0.933162099179542
Merged-chr1-172526053-2	chr1	172525553	172526553	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	L3b|LINE|CR1	4923.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.25155627697398	4.17149945764727	4.0460001465713	4.76676481096454	4.77217677785257	4.50536694560562	1.34901342109998	0.00283100245037084	0.0402532137381634
Merged-chr2-76648940-2	chr2	76648440	76649440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-946.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	5.11768497697676	5.41628935575915	5.3518365204756	5.13676726376482	5.15574261953815	5.29348266751597	-0.220345737501926	0.536616563763233	0.854086555550242
Merged-chr2-131047472-2	chr2	131046972	131047972	+	794.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	-4384.0	NM_001136063	14588.0	Mm.198399	NM_020014	ENSMUSG00000027316	Gfra4	AW060733|G630015H18Rik	glial cell line derived neurotrophic factor family receptor alpha 4	protein-coding	2.93661223976201	2.65715916087269	2.88001025867085	2.59694235402553	2.71628106341739	2.64366396241401	-0.923269327939414	0.225390125354607	0.620242138787118
Merged-chr9-116181857-3	chr9	116181338	116182338	+	793.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6475.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.87902152200269	4.3154687447845	5.02771177454976	4.28489424338756	4.25040118189184	4.3952335670527	-1.13786580345476	0.0172852426787547	0.146508146359766
Merged-chr13-52588023-4	chr13	52587512	52588512	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	4575.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.42585453465136	6.63091643650022	6.62980260674872	6.43879928393204	6.42639044118412	6.39063984316522	-0.231100294329583	0.384369677793185	0.765501008851491
Merged-chr7-121078030-4	chr7	121077519	121078519	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3489.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	4.12574621851551	4.13123306427775	4.43348103938667	4.09975819286442	3.93183998262697	4.29560504823092	-0.343085760124786	0.48526714398434	0.827394620754206
Merged-chr10-80151903-4	chr10	80151405	80152405	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	2223.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	6.05321135561066	6.0973328988555	6.08835324322192	6.55669991630448	6.40019186991188	6.14941652337726	0.513933473700393	0.0738145898156679	0.357153247042048
Merged-chr3-20026709-3	chr3	20026185	20027185	+	949.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	8625.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.17301544137583	6.07578707637924	6.25275879212498	6.00126205860993	5.89329777372006	6.10886076613468	-0.28896187346165	0.318052188660694	0.711817713144205
Merged-chr17-24708041-2	chr17	24707534	24708534	+	960.5	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	-381.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	6.83103098879345	6.88678231902552	6.91887177048381	7.50722582759703	7.96760400131246	7.37096297167803	1.15148877362483	1.72534291436332e-05	0.000642912374466383
Merged-chr5-146800537-2	chr5	146800037	146801037	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5581.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.34382527378466	3.19641338118022	3.23136364721294	3.58911373615751	3.60497425950957	3.88467326090054	1.63143315908808	0.00747165708491647	0.0819214182002542
Merged-chr2-155764136-4	chr2	155763639	155764639	+	976.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11203.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	4.59514815989016	4.3387502802942	4.70948964406774	4.96258652559138	4.92547768404907	4.77577232000001	0.809823569194174	0.0502065856969763	0.285198633443064
Merged-chr5-135464314-2	chr5	135463814	135464814	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69768.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	5.61840355344331	5.37161350822263	5.52440224335358	5.4789967948139	5.54881035552555	5.55875375642729	0.0407527042479011	0.901205396334991	0.977124931501791
Merged-chr1-33757801-4	chr1	33757297	33758297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145392)	promoter-TSS (NM_145392)	-47.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	4.88971980427827	4.79809220134077	4.20694296902898	5.00302278160828	4.33721168968254	4.22648985103896	-0.219825155933777	0.682796779880905	0.915220684961103
Merged-chr8-122946020-4	chr8	122945512	122946512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	96272.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.09576652294107	5.05194855950059	4.45859775263856	4.94319271039929	4.90709068845832	4.83727868847437	-0.0347274458771874	0.935489375545208	0.985852245513165
Merged-chr5-140759934-2	chr5	140759434	140760434	+	609.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010302)	TTS (NM_010302)	35807.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.5158442884371	2.43951587190177	2.77296185388058	2.4203465189919	2.11729045362923	2.5468221099975	-1.29751447326612	0.165784217789511	1
Merged-chr5-135632635-4	chr5	135632148	135633148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146002)	promoter-TSS (NM_146002)	-6.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.73827660222714	4.7651354574259	4.86337128955401	4.53858887540912	4.60031333155239	4.5406960212308	-0.530542520796256	0.190391503864352	0.576658035815524
Merged-chr2-133480667-4	chr2	133480174	133481174	+	959.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71485.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.98274902949609	5.00664135559772	5.68032756124217	4.9609284576238	4.8481516313538	5.39145963371446	-0.359766593418702	0.409096985838437	0.782496023117205
Merged-chr13-81396935-2	chr13	81396435	81397435	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 78 of 89)	intron (NM_054053, intron 78 of 89)	236209.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.38913681601914	3.21123062438985	3.40733990935768	3.70141940084648	3.81574480830185	3.69803548578069	1.50428185578995	0.00996225032141142	0.100161784043499
Merged-chr9-90263077-3	chr9	90262581	90263581	+	899.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	7688.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.98678384302928	4.9700621514643	5.29912999371132	5.49605231002665	5.49183251422223	5.30036245415826	0.721269893985037	0.0435890801023344	0.262366077221601
Merged-chr11-97841248-4	chr11	97840751	97841751	+	819.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080935, intron 1 of 2)	intron (NM_001080935, intron 1 of 2)	471.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.58787283356285	3.5590544811967	3.62937349579595	4.30278927383322	4.21553912575356	3.70404487779298	1.64693015770325	0.00328429057789928	0.0450515352993535
Merged-chr9-55253648-4	chr9	55253166	55254166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	29959.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	6.47063041786896	6.79288876460821	6.46516279958931	6.2818969805637	6.12865672750508	6.07209981075497	-0.697830800582997	0.0146480721400869	0.130440580761167
Merged-chr15-78900697-4	chr15	78900184	78901184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316685, intron 1 of 17)	intron (NM_001316685, intron 1 of 17)	916.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	6.39374646038513	6.64842060751993	6.65574450364438	6.34202041042613	6.65515204575666	6.63430047065556	-0.0254726211536585	0.926888031241924	0.983578869536024
Merged-chr5-25527623-3	chr5	25527129	25528129	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2389.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	2.77818583875624	3.20414224754902	3.17409737233981	3.06452696411927	2.98130974364238	3.35324800609157	0.311748067646386	0.663238999017091	0.907110065208622
Merged-chr16-3235424-2	chr16	3234932	3235932	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TACTG)n|Simple_repeat|Simple_repeat	-356966.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.56936273698407	2.457483124431	2.83162821934565	2.24710827109499	2.31223920889164	2.79075858344142	-0.885488504127188	0.331327239562918	0.722668404140379
Merged-chr8-36612705-5	chr8	36612153	36613153	+	873.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	1290.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.03035273733087	3.19925586200185	3.08297160496928	3.04779907397378	3.23290839608872	3.15501317135501	0.183596123428143	0.778102830957733	0.945408062706526
Merged-chr9-44343352-2	chr9	44342852	44343852	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110251)	promoter-TSS (NM_001110251)	876.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	5.63443175581008	5.68275650734617	5.9003381911529	5.8333608975367	5.75745147320098	5.79271789248963	0.106572087906771	0.731018892205708	0.931281022470375
Merged-chr7-104408493-4	chr7	104407982	104408982	+	695.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009099)	TTS (NM_009099)	37643.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	3.16125476403735	3.27647567047942	3.45852502480216	3.64165327831787	3.55136722344102	3.63498304617947	1.18415214422545	0.0474572766789946	0.275948642760712
Merged-chr7-5018611-2	chr7	5018111	5019111	+	728.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025324)	TTS (NM_025324)	-1765.0	NM_001290426	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	2.6109171153338	2.53835787940495	2.87329149358542	2.72767630067611	2.59157866814018	3.001783332776	0.536913097654624	0.489512637699856	0.829739482756292
Merged-chr7-122257264-3	chr7	122256756	122257756	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31869.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.47533307999164	5.50872993749595	5.5794671737693	5.26893006360305	5.34313388621879	5.61478927869706	-0.214855319852583	0.524451033904412	0.848701264715048
Merged-chr7-44496463-4	chr7	44495916	44496916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028169)	promoter-TSS (NM_028169)	97.0	NM_197991	69683.0	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	6.54371624462337	6.67653207340729	6.74213793168667	6.38674733815342	6.45549133070731	6.25140514570955	-0.447291475823275	0.0951955966783723	0.411148363215922
Merged-chr12-111427070-2	chr12	111426570	111427570	+	789.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	B2_Mm1t|SINE|B2	9625.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	3.27227864913979	3.13461994030144	3.15263542227079	3.11422753966466	3.25654609137539	3.33717877398894	0.200228766508212	0.751480629288688	0.937886504040509
Merged-chr10-81523165-4	chr10	81522674	81523674	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	ID_B1|SINE|B4	1051.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	5.92575356036433	5.89583199107763	5.82100362315528	6.3681913149323	6.25930586806997	5.4642889387928	0.377157610874864	0.299612536347649	0.696314831841331
Merged-chr8-83168175-2	chr8	83167677	83168677	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	2825.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.94710652251881	4.01238850652134	4.18571091040065	4.43843109512247	4.44554459975784	4.87247222923854	1.45713729348715	0.00230565813692989	0.0344556756928272
Merged-chr4-132895622-3	chr4	132895120	132896120	+	753.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11162.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	2.96026721269266	2.91734492443108	2.85032330881341	3.21411754584761	3.3505533593051	3.1753357397684	1.54681191077466	0.0232702386175801	0.178556806980045
Merged-chr19-3359436-2	chr19	3358936	3359936	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	intron (NM_013495, intron 5 of 18)	-29421.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	6.93627812440367	7.16345865399686	7.18886847279074	7.12750415800097	7.62817650897515	7.45485951202864	0.485466838742504	0.0646400477940685	0.331294677970363
Merged-chr16-8836776-3	chr16	8836266	8837266	+	744.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	6666.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	4.12872197841702	3.73009890504214	4.34856446290054	4.32678287700373	4.06363110189869	4.00826815291366	0.155358756936315	0.770567434637411	0.943392092118189
Merged-chr6-120186291-2	chr6	120185791	120186791	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-7532.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	2.23309012667506	2.23358069490005	2.41403030354923	2.24194387539796	1.98874668944728	2.42603590049367	-0.441769588706958	0.635348184214977	1
Merged-chr3-97992918-2	chr3	97992418	97993418	+	889.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20620.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.52171281691552	3.64815289025284	3.64182538437824	3.57368091517078	3.45773469184997	3.49748768958491	-0.342123919375065	0.543553356963226	0.857551302506722
Merged-chr8-46139162-2	chr8	46138662	46139662	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15016.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	6.96990166274964	7.04148677479345	7.07954529906314	7.39874296921637	7.41978411874448	7.00223346179154	0.402594289213899	0.111229767448924	0.445472081717353
Merged-chr15-84246414-4	chr15	84245898	84246898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	14355.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	6.55513199034348	6.67024163449769	7.04198000059368	7.01551148575949	7.15926867866365	7.21918415043439	0.569843077823272	0.0338335274306909	0.224947674826442
Merged-chr2-38290458-4	chr2	38289958	38290958	+	969.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3074.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	3.82747026819479	3.85440283061957	4.06176400111266	3.75998618051667	3.95900949384783	4.12900895866415	0.126328820415826	0.80735128409198	0.954557080558103
Merged-chr10-8878989-4	chr10	8878497	8879497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	7073.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.31212648234773	5.77530892589442	6.16896380635472	6.19943051353656	5.77775405775447	6.18834770200318	-0.0709678127328049	0.831938339722734	0.960547551840437
Merged-chr1-172334373-2	chr1	172333873	172334873	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5051.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	6.62373480681722	6.14192297634535	6.21838621332379	5.84496376772229	5.85446534267941	5.86834473119281	-0.846631572334953	0.00631051095211824	0.0724855045974398
Merged-chr4-145223422-2	chr4	145222922	145223922	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 7 of 9)	intron (NM_011610, intron 7 of 9)	23448.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.80752227273283	4.90778980156836	5.34220092639435	4.76289766475941	4.87727516874557	5.14077285268861	-0.213100206205555	0.605575253431035	0.883581756351046
Merged-chr3-28805381-4	chr3	28804831	28805831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026517)	promoter-TSS (NM_026517)	-177.0	NR_154889	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	8.07917922173919	8.53710914430006	7.95637370934473	7.88387636548676	8.10340002891349	7.77921465986561	-0.407331733617589	0.116323162801689	0.455354616597805
Merged-chr18-53268371-4	chr18	53267853	53268853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	22691.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.99958154015834	8.08851457984141	7.78454681184705	8.04259851335102	8.31555377585014	7.43895804440581	0.038037571903524	0.895153846947163	0.975665889379756
Merged-chr11-78165571-4	chr11	78165062	78166062	+	969.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009423)	promoter-TSS (NM_009423)	-12.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	4.4265767009403	4.19075913779206	4.20455245803788	4.18645781548523	4.07160200695991	4.13095439210001	-0.425771593032732	0.364551816306669	0.74990409323904
Merged-chr11-59554359-4	chr11	59553847	59554847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	RSINE1|SINE|B4	11661.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	7.58834769745403	7.28743788378422	6.89007641096333	7.03479160211212	6.75374118402928	6.72510301440999	-0.679481231137284	0.0193945516092294	0.158198397245443
Merged-chr3-10418343-1	chr3	10417843	10418843	+	669.0	f0_balb.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21787.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	3.51825278398791	3.62115003891575	3.54811486924457	3.18354194052914	3.04046375598878	3.28836950286395	-1.6430843986265	0.00928039007882243	0.0955696408018139
Merged-chr11-36947124-3	chr11	36946632	36947632	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2891.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.01852658717416	3.84910709618177	4.22091673641023	4.28238743512859	3.93156564067304	3.90855139754775	0.0674870553174791	0.89632579604488	0.975806926657291
Merged-chr17-5606421-2	chr17	5605921	5606921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	113821.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.9224629210068	5.75922706396778	5.82393651125342	5.24324509280944	5.23348472381715	5.66085097177345	-0.859671014587004	0.0110943077140459	0.108196806876504
Merged-chr13-41600162-4	chr13	41599651	41600651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6065.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.86015250045762	6.7576815277142	6.87333401686845	7.0816700081323	7.29313262846531	7.13230820456061	0.533698868064275	0.028520950206554	0.202279322785198
Merged-chr3-88579644-4	chr3	88579143	88580143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356316)	promoter-TSS (NM_001356316)	35.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	6.0627619660821	6.53986542832144	6.55505404579415	6.67792606227558	6.52981299263362	6.41854269869217	0.2387231773848	0.422095370569964	0.79098189652931
Merged-chr4-12090008-4	chr4	12089535	12090535	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198957, intron 2 of 3)	CpG-9730	665.0	NM_198957	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	5.13513552707577	5.12612098555377	4.53497787296228	5.16095132755549	5.21665552479496	4.40164696766446	0.0357359306570493	0.9427586040775	0.987202156853573
Merged-chr5-99219962-2	chr5	99219463	99220463	+	547.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	PB1D10|SINE|Alu	32964.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.56580310749813	4.33876418242259	4.79369697278575	4.61005238058538	4.53722743710958	4.51060461237492	-0.0344276695848908	0.937114693168348	0.986041955253459
Merged-chr17-67194323-4	chr17	67193843	67194843	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160116.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.63247185191296	4.38674920535616	4.38910521419654	4.36829150103611	4.01547652552625	4.27722074684476	-0.676935014888961	0.147541465830442	0.512449667318867
Merged-chr13-101914284-4	chr13	101913730	101914730	+	853.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-146013.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.16582982233828	4.82311259045702	5.25870422291473	4.81769299092658	5.23841352004477	5.46316448284019	0.21836674048075	0.594864462275671	0.87924603206665
Merged-chr3-135485585-4	chr3	135485062	135486062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027288)	promoter-TSS (NM_027288)	-49.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	6.10186976555836	6.13020094029889	6.13317914805446	6.14002763675965	6.02092261965249	5.96792537668894	-0.126855284516702	0.655874044129557	0.904455948291025
Merged-chr11-115476125-2	chr11	115475625	115476625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361594, exon 2 of 3)	exon (NM_001361594, exon 2 of 3)	458.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	7.23695453321311	7.23381095170418	7.23404898655795	7.14007707278278	7.62692201285498	7.39240087610347	0.257103879530757	0.308300896504553	0.70438784690274
Merged-chr5-17854707-4	chr5	17854206	17855206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-4914.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.78045958411717	6.72592704829234	6.60883606545886	6.38988915485901	6.79761299966357	6.77934390893823	-0.0639552244293383	0.815551943447045	0.956406058187625
Merged-chr13-81238140-4	chr13	81237637	81238637	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274063.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.41032507895523	3.32184551402347	3.22320566836346	3.12651719409895	3.22467501188423	3.05144259676548	-0.75943337858403	0.23844211478161	0.635194220801928
Merged-chr13-52982891-4	chr13	52982364	52983364	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1825.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	2.81724227961044	2.70873471925915	2.94004889393131	3.04113918843868	2.56920139805558	2.76816916670072	-0.0766338442373924	0.920197368039045	0.982296874430043
Merged-chr11-115612356-2	chr11	115611856	115612856	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001243586, exon 1 of 5)	5' UTR (NM_001243586, exon 1 of 5)	147.0	NM_027162	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	5.97042313128326	5.97572004498317	6.10434852511112	6.15862003887342	6.14791619626096	6.03189890080818	0.181432182704473	0.525955402024659	0.849272421520383
Merged-chr13-54818649-2	chr13	54818149	54819149	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29244.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	5.07864458854021	4.34530482329404	5.25825207753791	5.02751373039245	4.85127049391468	4.66018270375312	-0.197832814703078	0.678950676368194	0.913553914280182
Merged-chr14-55722198-4	chr14	55721662	55722662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019519)	promoter-TSS (NM_019519)	40.0	NR_153435	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	6.78269122294087	6.48197962142595	6.61806511925571	6.57687910686229	6.56971411314462	6.69307867810835	-0.0378238734518555	0.886635535494741	0.973794308941933
Merged-chr14-30745275-2	chr14	30744775	30745775	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	29660.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	5.2728887937453	5.53940586044047	5.70340395527695	5.53111716787263	5.63897780470531	5.37168178135164	0.0355322135033087	0.918294362050377	0.981747877135909
Merged-chr19-28918758-2	chr19	28918258	28919258	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-45162.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	5.30917980490629	5.44065556005768	4.84570994414854	5.90713015263221	5.91843315738987	5.34492498973698	0.986130338330108	0.0136538649242955	0.124655562060652
Merged-chr10-69320944-4	chr10	69320442	69321442	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31970.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.99353274472219	5.15799714117369	5.23185393797221	5.64968237828216	5.55692486958461	5.26336837631816	0.759155034829146	0.0325751506535125	0.219581427055854
Merged-chr6-87722892-2	chr6	87722392	87723392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.4683057925324	4.22527218077252	4.11940688792317	3.97167642217423	3.91981284846566	3.76753274872417	-1.13500168279591	0.0253573579140374	0.188640455648734
Merged-chr2-136891534-4	chr2	136891061	136892061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-33.0	NR_149746	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	8.49117951785212	8.6061687481383	8.11262022950698	8.53854377075366	8.67762850351713	8.08683637617862	0.0549243765019726	0.834435631709371	0.961311993510278
Merged-chr16-35769495-4	chr16	35768985	35769985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-129.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	8.98646337695546	8.9655068137089	8.58957273176427	8.73285714131804	8.85556762298822	8.46231038345562	-0.227318585519538	0.331461254063334	0.722790188901459
Merged-chr11-52395473-2	chr11	52394973	52395973	+	954.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153117)	promoter-TSS (NM_153117)	-955.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	3.72472137983222	3.80084165407717	3.67656923395918	3.9583199811221	3.77315488934005	3.95088375480157	0.494044391722118	0.346449659530411	0.734677492075457
Merged-chr11-48926445-2	chr11	48925945	48926945	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045540, intron 1 of 2)	L1_Rod|LINE|L1	737.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	5.28279707241151	5.17288268622216	5.0126698110604	5.56893716317781	5.51877443244874	5.66952339730006	0.806186163050414	0.0194381470511393	0.15838320993255
Merged-chr9-49427008-1	chr9	49426508	49427508	+	752.0	f1_c57bl6.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	13.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	4.08268620045362	4.00269487584609	3.69445974026427	2.99183250812007	3.03570342795151	3.09933917880636	-4.25544190622674	6.33127198136593e-07	3.61821757572456e-05
Merged-chr2-34742850-1	chr2	34742350	34743350	+	606.0	f0_c57.idr	intron (NR_151469, intron 2 of 26)	RSINE1|SINE|B4	12382.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.82943873566282	4.75640132831224	4.42646633565487	4.40409022051946	4.47169596881188	4.74318358293561	-0.366940412095155	0.40266187173573	0.778169663804428
Merged-chr12-85335612-2	chr12	85335112	85336112	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 2 of 21)	intron (NM_145138, intron 2 of 21)	3750.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	2.61768460001726	2.7899945084249	2.62335980127809	2.72768300588861	2.70525658232665	2.88091149659868	0.464834905741708	0.532533133386382	1
Merged-chr7-38085048-4	chr7	38084538	38085538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22452.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	4.19399721939826	4.51128695186579	4.57406803515071	4.36851898525314	4.48620008729408	4.52016541366996	0.0694481544205178	0.876843649931603	0.971407825796496
Merged-chr6-4955379-4	chr6	4954878	4955878	+	721.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	52058.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.74529265075555	3.99606616212024	4.20128165977517	3.8444535033833	3.69575797687177	3.85722144447341	-0.592344664927204	0.267167956665647	0.664550966981069
Merged-chr2-145813023-4	chr2	145812508	145813508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	26892.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.16752329609991	5.79652431272897	5.98432929042195	5.94189903067842	5.60641575699868	6.17243900822835	-0.135178533750086	0.686501584702292	0.916761528494478
Merged-chr11-109425816-4	chr11	109425308	109426308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025275)	promoter-TSS (NM_025275)	-138.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	7.52735304888626	7.58161173894346	7.3083736368256	7.29742085378774	7.16015935167053	7.28520028998275	-0.352789199667083	0.133591549432561	0.488819290786001
Merged-chr12-108937691-4	chr12	108937191	108938191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	43419.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	6.59197581034274	6.82760159316013	6.79482117099757	6.65772638624172	6.38632778840639	6.602028542508	-0.305959853230467	0.253919863774674	0.651117231535132
Merged-chr7-4080201-2	chr7	4079701	4080701	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	RMER17D2|LTR|ERVK	-16997.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.06312469511981	5.88937527362353	5.8567140664651	6.00819385016036	6.00792515678303	6.3619918613441	0.31495628168897	0.303393510594132	0.699940866429603
Merged-chr1-157416801-4	chr1	157416294	157417294	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-4199.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	4.77367298904936	4.85493615376947	4.98356157567756	4.58486101878519	4.35241599713665	4.68891868917611	-0.782263993304879	0.0602844598331785	0.317819138975538
Merged-chr7-75645737-3	chr7	75645283	75646283	+	800.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	190249.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.38397923707874	5.32114010852924	5.07361303819254	4.64290881067355	4.89053964415233	4.84173865387551	-1.01477605499104	0.00832686841857823	0.0885643370565255
Merged-chr13-59876705-2	chr13	59876205	59877205	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53558.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	6.12802680714154	6.30279663569001	6.46422573129673	7.04577050980429	7.1321216852323	6.98899054531329	1.20629016146695	4.0636280898854e-06	0.000184667594813318
Merged-chr14-9411228-2	chr14	9410728	9411728	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-472867.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.19067065698711	4.35132781031539	4.06011922255587	4.08719500349786	4.15927005911559	4.3585314091435	-0.0367561288778644	0.938616310188945	0.986515091506254
Merged-chr8-85800389-4	chr8	85799910	85800910	+	888.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028007, intron 6 of 17)	intron (NM_028007, intron 6 of 17)	40539.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	4.72052530018729	4.87954673864683	4.53617476347509	4.64177564200705	4.76471073249392	4.68833355103412	-0.0639751147787639	0.876496551065915	0.971334744650699
Merged-chr6-108781447-2	chr6	108780943	108781943	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1616.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	5.15673028165809	5.27483302789135	5.31403360144242	5.23776687298134	5.24575687198188	5.15154319896156	-0.0620932931133927	0.858584574204358	0.966933063363181
Merged-chr10-13008388-4	chr10	13007895	13008895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175102)	promoter-TSS (NM_175102)	-55.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	6.69525825764474	6.92144383838395	6.70601116714535	6.81508705315037	6.855033996153	6.57824250943746	-0.0301156136237537	0.90874240717151	0.979318923423343
Merged-chr6-43655053-4	chr6	43654553	43655553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	11225.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	3.65768001980841	3.6405265586555	3.62810843888037	3.76439218963223	3.71934956567293	3.64474539050484	0.23758073372127	0.659132049881991	0.905229020277098
Merged-chr11-69979800-2	chr11	69979300	69980300	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018740, intron 4 of 8)	intron (NM_018740, intron 4 of 8)	530.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	6.60956610614853	6.49836531939213	6.5616244253399	6.3172705251204	6.73679557265201	6.40384325175421	-0.0738614369009322	0.79327504052994	0.950312844775479
Merged-chr11-75139472-2	chr11	75138972	75139972	+	746.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	28680.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.16423979578194	3.80917259702398	4.42953902960601	4.0578958754692	3.94233640485764	3.92132403115721	-0.504756264407273	0.339394631369275	0.729216011748255
Merged-chr12-85596394-2	chr12	85595891	85596891	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.7922795519851	4.18900781100538	4.47331619635797	4.51982646011324	4.20878590834737	4.27151447975076	-0.43711861735927	0.367528453616611	0.752471538099639
Merged-chr7-68748483-4	chr7	68748069	68749069	+	992.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042592, intron 1 of 7)	intron (NM_001042592, intron 1 of 7)	669.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	6.48692221725874	6.77850806445818	6.96460265839879	6.79052780321935	6.71047816593939	6.88764803709363	0.067779191034741	0.803691044959186	0.95351077179348
Merged-chr3-96561418-2	chr3	96560918	96561918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023719, exon 8 of 8)	3' UTR (NM_023719, exon 8 of 8)	3461.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	5.19188622563697	5.46203304626517	5.33870055525692	5.68328304292856	5.790403833649	5.58257398019433	0.678642874420942	0.041905876046016	0.256136186991603
Merged-chr2-165321006-4	chr2	165320514	165321514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-188.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	7.72293543501836	7.67186767680226	7.72818523454151	7.80881162294425	7.94178220777881	7.58000975734814	0.124578258853182	0.585175543353676	0.874892547046187
Merged-chr9-7344319-4	chr9	7343820	7344820	+	921.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320077)	promoter-TSS (NM_001320077)	-77.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	4.40593306944356	4.18631047283597	4.3500523647193	3.86701788410486	3.53392272095472	4.24876939733735	-1.19465157448702	0.0318953360817525	0.21657802551742
Merged-chr8-120669697-2	chr8	120669197	120670197	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009941, intron 2 of 4)	intron (NM_009941, intron 2 of 4)	1377.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	3.97847400088009	3.58770774281889	3.74262600568404	4.03483303104406	3.58900683038521	4.05862968880002	0.388487952474261	0.496108027559473	0.832884389427821
Merged-chr11-103172318-4	chr11	103171827	103172827	+	739.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	1189.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	3.84867902014194	3.57384589415447	3.82550831614293	3.3124179932493	3.21649474545016	3.48612727310316	-1.57114703784475	0.00930714597292889	0.0957622112174437
Merged-chr10-11280149-2	chr10	11279649	11280649	+	837.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1181.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	6.20781869404503	6.64941369624213	6.26289945262139	6.22835292649333	6.58447668202375	6.05594505353827	-0.119195730344802	0.709615655134261	0.92401439884764
Merged-chr18-68156775-2	chr18	68156275	68157275	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-71171.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.7543047490835	3.59326887421918	3.52509143683978	3.36083624915019	3.46806047397171	3.54134515240158	-0.633582800149455	0.271751805917802	0.669165290152271
Merged-chr6-116077888-1	chr6	116077388	116078388	+	745.0	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-82883.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.61241681423301	3.51685927844444	3.57292430171994	3.11590717333975	3.210754070715	2.99740463684181	-1.85034082435942	0.00589125483909547	0.0688772702896524
Merged-chr12-34787562-4	chr12	34787044	34788044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	129551.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.13738710203884	4.9353126299165	5.05814840121309	4.79349497483875	4.62236085287728	4.44638684311113	-0.926178708565213	0.0226115476742734	0.175150033409136
Merged-chr11-48813340-3	chr11	48812864	48813864	+	748.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	4027.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	5.24826090342296	5.24869693854865	5.5510032162141	5.32344116327066	5.25255098847734	5.53260720093696	0.0381014393846533	0.913943056228371	0.980838788936973
Merged-chr13-37776932-4	chr13	37776438	37777438	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49100.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.05532367936321	5.9188699034986	5.98229323362473	5.97591599648082	6.13088990708392	5.87398668982397	0.0365872071864059	0.90179401291299	0.977356766938531
Merged-chr6-134268216-3	chr6	134267722	134268722	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-128107.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.53045095262985	5.18526039372702	5.03110596578713	3.84323789196717	3.59107665908089	4.05997688601399	-4.26162097476814	2.93255673219822e-13	6.16192375183711e-11
Merged-chr10-8505028-4	chr10	8504616	8505616	+	916.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13709.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.6185997353996	5.66167699860505	5.64521493235618	5.66573894680292	5.72260513536737	5.56783514103216	0.0333115068814748	0.915341168658633	0.980959026698783
Merged-chr12-111456058-4	chr12	111455570	111456570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13409.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	5.01924090199258	5.12099833951634	4.9639936007119	5.15204340477376	5.09677073037849	5.5243010397998	0.451177168734636	0.230627091127489	0.626381219532661
Merged-chr19-24991260-2	chr19	24990760	24991760	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-8269.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.06824397999342	5.15082310806646	5.54846419179311	5.27887764702444	5.51964133847545	5.55727314787343	0.38975825414398	0.286614301522943	0.683850513308513
Merged-chr12-69507574-4	chr12	69507079	69508079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-32029.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.06252252282604	3.61155381116097	3.54043796836522	4.53248316683117	4.62527895414721	4.03620490781996	1.94990943755211	0.060300293428519	0.31784282374257
Merged-chr9-58806118-4	chr9	58805609	58806609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17403.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	5.11264050446111	4.70408726109386	5.47102287101855	5.04250794777411	5.01991176110467	5.31253328145923	0.00621100860797714	0.988188327975009	0.99731652667245
Merged-chr4-86396879-4	chr4	86396388	86397388	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 22 of 27)	intron (NM_029967, intron 22 of 27)	161415.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	2.57088702252743	2.77975624937278	2.82844608366486	2.42791411865221	2.52291453084207	2.90049814671802	-0.54295871560481	0.505738348591974	0.838177729332582
Merged-chr1-131018622-5	chr1	131018084	131019084	+	930.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1261.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.04466425023816	5.98845167137062	6.05621332538214	6.84015867486582	6.67070764580812	6.59080441197889	1.11331513202218	4.26767761033431e-05	0.00138388510756312
Merged-chr1-80759892-4	chr1	80759432	80760432	+	821.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1379.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	2.00998121356056	1.9066203053526	2.13200789449147	2.19152682017189	1.98565416868128	2.27285972047845	1.03501743258858	0.271758876375344	1
Merged-chr2-23040355-4	chr2	23039841	23040841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331044)	promoter-TSS (NM_001331044)	-100.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	7.4300205731258	7.36777197497645	7.01615107492223	7.53309314230801	7.45511607263428	7.29326314116022	0.208182697952926	0.406110476269652	0.780563846612881
Merged-chr6-53592514-4	chr6	53592032	53593032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	19158.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	7.2339879011804	7.1199712335533	6.840227212314	7.18670771635428	7.44857853160061	7.09945986804465	0.266624940529017	0.308893526389228	0.70476767553933
Merged-chr3-103858252-3	chr3	103857719	103858719	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1576.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	5.72341461110075	5.63461557838324	6.0426049812844	7.62383502736742	7.81631548988393	7.4847672834472	2.95598280702556	5.23244403412708e-27	1.36056625997389e-23
Merged-chr19-30031242-4	chr19	30030715	30031715	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	CpG	702.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	7.61665845996933	7.73431036237829	7.6616267348417	7.74339334861276	7.65708892224071	7.94714402293426	0.158479373415627	0.481835464235184	0.825208669475694
Merged-chr10-93489287-2	chr10	93488751	93489751	+	867.2666630000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_010401, exon 1 of 20)	exon (NM_010401, exon 1 of 20)	483.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	5.34601047877995	5.29471991921532	5.29209713732516	4.14742175045559	3.7410494458691	4.45955958993741	-3.03004844068027	1.22958864903533e-09	1.33566073510355e-07
Merged-chr3-105794568-1	chr3	105794068	105795068	+	588.0	f1_balb.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	6813.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.78242353846789	4.7173477984785	4.71159882234813	4.79336658948978	4.50001117935503	5.21416023637549	0.266051803831045	0.544902568758751	0.857896259450602
Merged-chr1-74303171-4	chr1	74302695	74303695	+	845.9895630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	1141.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	4.89035729603013	4.83710564860112	4.96208931472455	5.07999509653376	4.78472933202181	4.80394342463602	0.0067080493930639	0.986253435603535	0.997033990984076
Merged-chr4-102609855-3	chr4	102609367	102610367	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	20024.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.93740018456753	3.73067108764911	3.70515780472079	3.56428347697754	3.43750594767034	3.87489337607039	-0.572737453582707	0.315281796145417	0.709678290690576
Merged-chr13-117028474-4	chr13	117027964	117028964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.58502081191561	4.34711021998089	4.56898325981302	4.50797293627795	4.16732922521598	4.42894822113578	-0.339165808280548	0.45340746817343	0.809761744660326
Merged-chr13-110393972-2	chr13	110393472	110394472	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1072.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.05708178800922	3.76723887346965	3.68909873899533	3.73122111376069	3.87624828352625	3.86592686778435	-0.0871053023567511	0.871224427829484	0.970222087171093
Merged-chr2-30809480-2	chr2	30808988	30809988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356433, intron 1 of 3)	B2_Mm2|SINE|B2	1305.0	NM_001356437	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	2.49044121145341	2.60305429397375	2.45057996309999	2.56231272246997	2.38208982924873	2.65257273059382	0.0802460541778242	0.920175357900772	1
Merged-chr9-118840794-2	chr9	118840294	118841294	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 6 of 13)	LTR16C|LTR|ERVL	-85742.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.71291580911575	2.60069510059352	2.86881395392407	2.45879640598117	2.55310187911792	3.10513812547372	0.0274392057211027	0.973680717017084	0.994049606782052
Merged-chr7-67526370-2	chr7	67525870	67526870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	Lx8|LINE|L1	118866.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	6.32310466692733	6.14502333004244	6.08129555762522	5.40952052950221	5.71804171851708	6.12071783638832	-0.728979757929117	0.0315266414858544	0.215102755245113
Merged-chr15-100152460-2	chr15	100151960	100152960	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1936.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.23604406323579	5.30866717165926	4.98535704841025	4.83821060792337	5.12821871590143	4.81933789379354	-0.518257767475491	0.182922340174847	0.565905788268466
Merged-chr9-102879714-4	chr9	102879216	102880216	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042607, intron 6 of 14)	intron (NM_001042607, intron 6 of 14)	44796.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	3.84680410189894	4.08579451967433	3.72822477474168	3.58840377115642	3.86718322312858	3.31877316198262	-0.9054200780851	0.152679015079178	0.521002111495579
Merged-chr1-151570541-2	chr1	151570041	151571041	+	999.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	-832.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	2.69629518678107	2.53170443087667	2.68794318135275	2.51636916236029	2.54020169212561	2.50830863828532	-0.676717570133711	0.383849261153942	1
Merged-chr14-22813497-4	chr14	22813000	22814000	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-270702.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	3.62723862691692	3.51154275647109	3.61455247581075	3.25347439981442	3.43097574010984	3.29803341235694	-0.938480142249002	0.117466025521724	0.457576754516462
Merged-chr11-117657529-3	chr11	117657043	117658043	+	775.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	3254.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	3.33124709821589	3.08712461223238	3.13126088254086	3.21905199343626	3.07864978499593	3.26115351373502	-0.0261991565511058	0.967583926230702	0.992574844153271
Merged-chr2-165322522-2	chr2	165322022	165323022	+	826.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1696.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	5.77598066565194	5.63259280148061	5.66166148938281	6.13036035070251	6.25568016480716	5.98173747150956	0.77829379931966	0.00992191792581477	0.0999253143029769
Merged-chr19-8806623-2	chr19	8806123	8807123	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4093.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	5.44503286798211	5.3323919698162	5.61636938386257	5.75603460430631	6.13837561612351	5.90658347228508	0.897507693233227	0.0061472725642953	0.071002534082438
Merged-chr14-32281777-4	chr14	32281267	32282267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011960, intron 15 of 17)	intron (NM_011960, intron 15 of 17)	-40252.0	NM_001081130	239017.0	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	4.33355732476382	4.63236052597988	4.27119511028619	4.3667758999821	4.51198161835745	4.51753103206228	0.0904186023741839	0.840637737151801	0.962819298477451
Merged-chr13-100576106-4	chr13	100575607	100576607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23389.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	3.35313515253084	3.29614001551411	3.30103101656023	3.20903726235291	3.55016679551127	3.68890452059994	0.67257586090424	0.278019308638927	0.675349758662575
Merged-chr7-102244874-2	chr7	102244377	102245377	+	788.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	5241.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.06364821626098	5.11911011775719	6.11763821498528	5.55825210196126	5.47339183141218	6.31608768810764	0.534838706582597	0.485153723432888	0.827362498348167
Merged-chr5-144253082-2	chr5	144252582	144253582	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	RMER12C|LTR|ERVK	-2143.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	3.08120859101194	3.20038106403444	3.17658286611989	3.01817433882341	2.96592703465666	2.75051508222875	-1.07075442934147	0.132838135384814	0.487694104062442
Merged-chr9-107580692-4	chr9	107580194	107581194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019750)	promoter-TSS (NM_019750)	25.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	7.68093253328534	7.66515917524169	7.58490629042694	7.77705166099682	7.93113002799365	7.67936885917795	0.229626039722999	0.301132353556265	0.697832487817053
Merged-chr3-88950086-4	chr3	88949603	88950603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022994, exon 1 of 13)	5' UTR (NM_022994, exon 1 of 13)	179.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	7.10015932494511	6.8124788968168	6.83767178024172	6.85265126545854	6.50308686500295	6.64361254504429	-0.396954900822917	0.141918461875036	0.502906663928196
Merged-chr6-129396376-2	chr6	129395876	129396876	+	903.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-921.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	6.24521302946279	6.08876982802618	6.33478985146636	6.4411755876331	6.51995404484253	6.81648354936645	0.610921220827633	0.0315455791206867	0.215142077237881
Merged-chr5-146795056-4	chr5	146794571	146795571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011669)	promoter-TSS (NM_011669)	-115.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.73868491197263	5.31022787014724	5.75511739187695	5.96796313972302	5.52021502815026	5.98008943153846	0.400627395845131	0.260945635268628	0.658521360261207
Merged-chr10-60004298-2	chr10	60003798	60004798	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199187, intron 1 of 10)	(T)n|Simple_repeat|Simple_repeat	971.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	4.47124325039546	4.65132948395355	4.4882617567261	4.40145085784616	4.32964292537949	4.6354397719933	-0.229136088797498	0.599257149854099	0.880928581989958
Merged-chr2-90543300-1	chr2	90542800	90543800	+	548.0	f0_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37347.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.48104649349949	7.09664222239272	6.82857359893031	7.09465603050898	6.94857873283218	7.04639546259821	-0.218199468315107	0.433625781132433	0.797884478372161
Merged-chr10-8518605-1	chr10	8518105	8519105	+	1000.0	f1_c57bl6.idr	5' UTR (NM_177387, exon 1 of 8)	5' UTR (NM_177387, exon 1 of 8)	220.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	6.91931326635689	7.0421061077108	6.68096629778512	6.78666503328917	6.7611682806675	6.99226789403669	-0.083658831399002	0.749441006218257	0.93734197999953
Merged-chr7-88054418-4	chr7	88053907	88054907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-223678.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.05119421123614	5.00363955726127	5.16569768844744	5.08472657376837	5.01170817706734	4.79701920585565	-0.196574355641248	0.601144918273206	0.881884913086671
Merged-chr11-100622924-4	chr11	100622427	100623427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028024)	promoter-TSS (NM_028024)	-28.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	7.36905799316268	7.20538255890912	6.98908738067215	7.64924936720167	7.80134360413825	7.11772225939233	0.532938016483447	0.0601848736012389	0.317677173471954
Merged-chr19-41403474-2	chr19	41402974	41403974	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18404.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.1733722795654	6.43721609240397	6.418083743284	6.37674871660526	6.80397825329143	6.88646799514863	0.578166072372444	0.0489030226997492	0.280939154432528
Merged-chr19-7226727-4	chr19	7226211	7227211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9095.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	6.20199451521537	6.18996711583958	6.52021505049831	6.35668455687835	6.52490447383683	6.24384828942599	0.142340935016792	0.621672886446479	0.890838690442753
Merged-chr9-59735865-4	chr9	59735343	59736343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	14806.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	7.62489796329116	7.51057077589507	7.36809096093462	7.6575655507172	7.84750992587859	7.19521548882922	0.141841321026841	0.597330019172313	0.88036091123097
Merged-chr6-91680265-2	chr6	91679765	91680765	+	827.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3802.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.937634010995	3.23403691592965	3.09354121645103	3.05752289853307	3.33988901631866	3.16609122874214	0.433206292457456	0.518948152090924	0.845542912781001
Merged-chr10-61135385-4	chr10	61134873	61135873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	12311.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	5.8312874620425	5.75181217981103	5.97732852320663	6.12650672737067	6.18385487182887	5.71001058333243	0.328649369932629	0.301440970349816	0.698200786354329
Merged-chr7-126628213-1	chr7	126627713	126628713	+	634.666687	f0_c57.idr	Intergenic	Intergenic	-2743.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	2.87311217063809	2.95993834857946	3.28385452214246	3.00838567666957	2.64475058677274	3.35430771549542	-0.0580776098848938	0.940557868237778	0.986852666940686
Merged-chr17-29431390-2	chr17	29430893	29431893	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59652.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.37764217704257	5.31821221916973	5.11403372215496	5.63947155302961	5.80083133643299	5.65106915192568	0.798019677185598	0.0174223983843437	0.147355450779068
Merged-chr1-88281259-2	chr1	88280759	88281759	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3680.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.46019831906592	3.80162377144963	3.62112713519294	3.30419492070118	3.50366075380359	3.88550638503205	-0.193568105116937	0.753014516893611	0.938549578325581
Merged-chr11-54440394-2	chr11	54439894	54440894	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	(TC)n|Simple_repeat|Simple_repeat	2215.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	5.49203318165849	5.66051242891736	5.04729698700737	5.38863612442924	5.39332061026473	4.77742459054836	-0.403272866319994	0.338593144456892	0.728543936569625
Merged-chr12-17348344-4	chr12	17347848	17348848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-145.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	6.82329680433736	7.10771106598999	6.96038882712967	7.27914509779322	7.46084349049342	7.31768660148	0.581905543020452	0.0174862734770634	0.147640572651394
Merged-chr4-121028883-4	chr4	121028382	121029382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10684.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	4.30058993197632	3.9814522301136	3.93773361417973	4.10394656953905	3.78394615904296	4.0576149059828	-0.310496641764972	0.549346529160059	0.860273914502926
Merged-chr13-55028588-3	chr13	55028115	55029115	+	746.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011307, exon 15 of 15)	exon (NM_011307, exon 15 of 15)	-7230.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	4.54703531741203	4.84426031155348	4.9357935470649	4.93390394950734	5.14827253984579	5.03528824937961	0.587381244811546	0.138440681388931	0.497209965018279
Merged-chr9-123478575-8	chr9	123478084	123479084	+	945.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013860)	promoter-TSS (NM_013860)	-117.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	5.88842215660902	6.28102096905351	6.07361685993079	6.28202839953423	6.31293250207407	6.61834291030399	0.518807304406836	0.0866218701449885	0.389875727323211
Merged-chr11-111444991-3	chr11	111444501	111445501	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	378837.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.84029961777374	2.88370071508203	2.88034478765087	2.93914585963623	2.71621483173247	3.01226866842531	0.104283604193063	0.882952664855012	0.973343819056613
Merged-chr7-145304359-1	chr7	145303859	145304859	+	1000.0	f1_balb.idr	intron (NM_145379, intron 2 of 2)	intron (NM_145379, intron 2 of 2)	3450.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	1.84313055196408	1.94528107277612	2.04089637235423	1.83089875203355	1.68713556046903	1.70370921961938	-1.92952073608901	0.0755873533529754	1
Merged-chr12-79140984-4	chr12	79140476	79141476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	10188.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	7.84046974118304	7.65527054738188	7.36461929781357	7.23084160393226	7.62634031340188	7.23249719706741	-0.372941761336756	0.162150609651695	0.535554635331173
Merged-chr3-65927915-4	chr3	65927413	65928413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30336.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.6589311827744	3.54396045616549	3.57388245619117	3.6441962577468	3.61422305056378	3.59028851955644	0.081187940052955	0.882900763573672	0.973325083825709
Merged-chr3-158019785-2	chr3	158019285	158020285	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093752, intron 6 of 12)	intron (NM_001093752, intron 6 of 12)	11987.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	2.98450925343101	2.99470243563927	3.11929934791753	2.82235859064223	2.93245623183311	3.29789983812883	-0.0216256206947955	0.975379538612784	0.994454548709104
Merged-chr7-89403262-2	chr7	89402766	89403766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	956.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.99770553651619	4.45002701808568	3.89381746499265	4.11229440340943	3.76833548327018	4.01684313608562	-0.510230136148224	0.344334748407316	0.732980075743821
Merged-chr19-59041754-2	chr19	59041251	59042251	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 4 of 16)	intron (NM_001114312, intron 4 of 16)	34318.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.9593722452952	3.83903892426695	4.06273080765811	3.75912062115098	3.77102016365405	3.84482449601879	-0.510718724935416	0.321187964752255	0.714789344506301
Merged-chr7-45467908-2	chr7	45467408	45468408	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	2.14146795768169	2.15492509887847	2.1712331394123	2.40830858401906	2.32821232150893	2.50883183265789	1.84080219227296	0.0384310376899165	1
Merged-chr9-21411837-4	chr9	21411396	21412396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021888)	promoter-TSS (NM_021888)	59.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	5.06805063280762	5.34307625842628	5.39233730884604	5.06798325836866	5.04621163855133	4.76458908714639	-0.613055238570545	0.108818579969169	0.440755119220504
Merged-chr16-21694739-4	chr16	21694247	21695247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-82.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	8.24655112570029	8.15106841308189	8.10927111028594	8.07248580413398	7.88923942551941	7.81259079221261	-0.340242124129933	0.116009379396093	0.454849064274723
Merged-chr11-83304040-2	chr11	83303540	83304540	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027915, intron 1 of 20)	intron (NM_027915, intron 1 of 20)	1343.0	NM_001035854	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	3.30186714406889	3.10994686195618	3.21240710457452	3.05928366723594	2.94014023974594	3.22755963168713	-0.599442753509141	0.363119040743298	0.748678274950278
Merged-chr8-13677673-4	chr8	13677172	13678172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-85.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.67526446553798	7.77626022299917	7.53208064393936	7.38982853687989	7.63387236608792	7.35476781189797	-0.286279238917688	0.225933615706816	0.620895841724446
Merged-chr12-16591690-4	chr12	16591188	16592188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	-1918.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.31153121232466	3.52162133249684	3.13416398076309	3.23958000184765	3.11118010892025	3.26769468985895	-0.551357443517127	0.391974929478933	0.770782330002482
Merged-chr2-126478669-2	chr2	126478169	126479169	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	12884.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	5.10501444720181	5.4070689623713	5.20671917632697	4.85265518311554	4.75495967723629	4.88866154499211	-0.903143448888516	0.0165169169459966	0.14221229565837
Merged-chr4-63541245-4	chr4	63540759	63541759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3506.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	5.76290545840021	5.78834265812692	5.5258742705719	5.615109375031	5.64295676855069	5.11439827542243	-0.389729212690915	0.275141495512612	0.672541157974601
Merged-chr11-6391729-4	chr11	6391216	6392216	+	960.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3409.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	4.4321147217076	4.23217951550361	4.15767066958476	4.40502842453252	4.26593574942671	4.12818187449695	-0.0253224575162367	0.956838988885116	0.989887454023164
Merged-chr11-117775729-4	chr11	117775239	117776239	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 6 of 19)	non-coding (NR_154387, exon 6 of 19)	3909.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	5.80818066039287	6.23532090917308	5.85768103184316	5.85187801790465	5.51611054913396	5.37122778087664	-0.695180790472399	0.0453303229193959	0.268764821823934
Merged-chr10-93123350-1	chr10	93122850	93123850	+	576.0	f0_c57.idr	Intergenic	PB1D10|SINE|Alu	-37526.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	3.79311485232488	3.84409234944487	3.80481023678991	4.61596923990457	4.42499220440353	4.49940968626503	1.99900778691802	4.63630834926793e-05	0.00148148212413935
Merged-chr6-38946679-1	chr6	38946179	38947179	+	543.0	f1_balb.idr	intron (NM_011539, intron 1 of 12)	L1_Mus3|LINE|L1	27693.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.89329460289307	3.5479326670803	3.55105946403006	3.60140342965553	3.56165702177855	3.72943903198132	-0.17613189302816	0.756820202763454	0.93970656029399
Merged-chr5-136949740-4	chr5	136949206	136950206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3569.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	4.91150554915397	4.67834869016086	5.01629988915354	4.76292313885388	5.02634920953184	4.8303581336966	0.0382205076560806	0.923908541842476	0.982825133592799
Merged-chr10-117320761-4	chr10	117320294	117321294	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27926.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.30406692591098	4.31384554648105	4.00997400829415	4.26872296708746	4.22372475283422	4.57154143283979	0.344067577156962	0.473074506751476	0.820624417189061
Merged-chr13-60644081-1	chr13	60643581	60644581	+	656.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	41870.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.36389981755787	5.35909636835098	5.46497524451731	4.80058037099331	4.63643513920342	4.963660874382	-1.27859846095138	0.000605919188317408	0.0122401854385809
Merged-chr3-142273428-4	chr3	142272953	142273953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-104028.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	5.59322132861931	5.69940432582796	5.56293098070282	6.26627141426135	6.67440109988047	6.34353261658076	1.41958682709942	3.99581211411577e-06	0.000181883771548876
Merged-chr17-29008130-4	chr17	29007632	29008632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134115)	promoter-TSS (NM_134115)	-137.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	8.32676356559326	8.27690199545276	8.22203288205296	8.41921618419393	8.50297542843592	8.25181291346468	0.171391568181536	0.411384822597938	0.783877099438722
Merged-chr18-34506892-4	chr18	34506387	34507387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-64.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	8.7296787849064	8.8713727443908	8.71058165158342	8.50212070119084	8.68784159020493	8.4040685244928	-0.320851677986125	0.126124649657805	0.47495383095251
Merged-chr2-167931019-2	chr2	167930519	167931519	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.05774837935028	4.80789800422377	5.26843287302811	5.28637127253237	5.13792297581498	5.00016279797354	0.217370861663526	0.572212329034323	0.869807909725036
Merged-chr2-3668905-4	chr2	3668397	3669397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44561.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.93655148930572	4.67380274475432	4.69771508828597	4.73939930120703	4.93814887302507	4.9880869352263	0.25262624523294	0.527353507432147	0.849922098680457
Merged-chr1-86492919-4	chr1	86492417	86493417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33640.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.25805249128141	5.37475585655285	5.50232837639175	5.30277989801135	5.20057361423497	5.26843228280812	-0.23941416517331	0.486782363897403	0.827985697457807
Merged-chr9-114639514-4	chr9	114639018	114640018	+	977.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153585, intron 1 of 19)	intron (NM_153585, intron 1 of 19)	682.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	7.08410633898805	7.33259557293537	6.58888388974489	7.20059984699391	7.49033679581899	7.09085070286297	0.340790863901033	0.256228538461751	0.653254411506125
Merged-chr10-87842685-4	chr10	87842188	87843188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-15577.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.4401864399966	7.66069660448209	7.12392698351449	7.50377487122263	7.6306052402277	7.16853931257386	0.0311680275457747	0.90905936721577	0.979384717565381
Merged-chr7-16571428-1	chr7	16570928	16571928	+	557.0	f1_balb.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-42396.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	2.64040868398753	2.56245928660606	2.5972351570545	2.37596794992206	2.24652424099926	2.41457970074127	-1.71764106016274	0.0435775661010303	1
Merged-chr2-38643896-4	chr2	38643351	38644351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011187)	promoter-TSS (NM_011187)	55.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	7.18099808002552	7.55785264814663	7.13565131366656	7.35001890882927	7.33834649735208	7.07462029424649	-0.069607591421374	0.789640645271285	0.949278919326382
Merged-chr17-17836592-2	chr17	17836092	17837092	+	681.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 3 of 8)	intron (NM_001162909, intron 3 of 8)	5617.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	3.39226531933118	3.3035317350385	3.45185235548877	3.27740836288608	3.09856977296812	3.72013963138235	0.0087232854448931	0.989307359869657	0.997591975441369
Merged-chr2-132575418-3	chr2	132574919	132575919	+	879.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 1 of 19)	RSINE1|SINE|B4	2829.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	5.925502404667	5.97516181359849	5.95527147576148	5.69939175990949	5.62994227258378	5.82592467859512	-0.428791586891895	0.155123871939398	0.524633058421063
Merged-chr7-83859914-4	chr7	83859438	83860438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24403.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.38098061694178	5.4383812391603	5.4219742135953	5.35858704934183	5.28493702088968	5.6998903426411	0.0642805105000889	0.852793142527695	0.965544656676077
Merged-chr12-75735680-5	chr12	75735189	75736189	+	985.628601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030750)	promoter-TSS (NM_030750)	40.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	7.35942755103755	7.32678681450071	7.13309788517452	7.34910286150709	7.06150715199862	7.15281007777183	-0.135118805894831	0.580508996887359	0.872884157869997
Merged-chr18-58660615-1	chr18	58660115	58661115	+	644.0	f1_balb.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	1133.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	4.67312110558016	4.73798629006033	4.88225590789572	4.46513911673521	4.67126153712489	4.48073644000937	-0.503875910787856	0.228191235862104	0.623147576440797
Merged-chr2-84647772-2	chr2	84647272	84648272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	1708.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.42901129704187	5.3028973913521	5.69831525362377	5.74089192470027	5.93120806334235	5.48124795236477	0.498134264613029	0.150337759189132	0.517246479850651
Merged-chr4-139382544-4	chr4	139382056	139383056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1897.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	6.94068656962242	6.74780319669956	6.62802424787088	7.3651457952959	7.23160408715804	7.05424071721707	0.672215097175356	0.0090058602235323	0.0936779944483628
Merged-chr17-6783174-4	chr17	6782701	6783701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-421.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.74885700134547	7.89342434414702	7.47202143079105	7.51742944420975	7.40412337565712	7.31837369308385	-0.445540489826666	0.0653825626844415	0.333402544414945
Merged-chr3-38114626-4	chr3	38114110	38115110	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93509.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.78095187560358	4.72690643775133	4.29769782253661	4.65223308756105	4.53220246753909	4.79629390411884	0.0621528085770132	0.888339520837878	0.97401529899353
Merged-chr17-21008908-4	chr17	21008401	21009401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145483)	promoter-TSS (NM_145483)	-40.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	6.63739206775764	6.84529866765796	6.85962080192914	6.8860715748767	6.79861316469674	6.84545467351198	0.0946642314505246	0.706918783558666	0.923161381966479
Merged-chr13-54829750-1	chr13	54829250	54830250	+	611.0	f1_c57bl6.idr	Intergenic	Intergenic	40345.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	2.72634397329249	2.74227997763251	2.97900428649263	3.53894468854593	3.43318671817882	3.56894372094191	3.69657886169503	8.80497891883066e-06	0.000358086356734145
Merged-chr14-27096951-4	chr14	27096462	27097462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47031.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.20475727766907	5.3023217420941	5.56247615079998	4.98571603760952	5.40393476591535	4.96550209511024	-0.415814493388894	0.283491476024373	0.681376161050487
Merged-chr10-80147987-4	chr10	80147491	80148491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021565)	promoter-TSS (NM_021565)	-281.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	7.90498628886366	7.6236843779361	7.76312803780763	7.60957172395086	7.79679640349294	7.6223821913635	-0.123985611788393	0.5886122654579	0.876597390181503
Merged-chr4-148591402-4	chr4	148590836	148591836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009272)	promoter-TSS (NM_009272)	-177.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	6.17577562624564	6.28986406907737	6.35764980676262	6.25935869090087	5.88036280051386	5.97689554087734	-0.381962542358814	0.198988907244731	0.587423864896856
Merged-chr2-84523638-4	chr2	84523164	84524164	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16791.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.97729184407186	7.06126119888711	6.79256425508099	7.22234613665184	7.35359881083516	7.01443469037324	0.388212730165959	0.126192404161514	0.475052622314112
Merged-chr6-54946738-4	chr6	54946266	54947266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 3 of 11)	ORR1G|LTR|ERVL-MaLR	24895.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.75427026634588	6.59054166609622	6.60385557095915	6.54457992788275	6.82071888568199	6.94769124496304	0.195921280983468	0.465993166114953	0.817283042094577
Merged-chr12-77791367-3	chr12	77790814	77791814	+	757.857178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	381173.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	4.12536208083369	4.41790483150693	4.40471226914901	4.22694243467802	4.56490900871252	4.47151529413242	0.290428968398175	0.530072235851486	0.851070276054813
Merged-chr10-99172256-4	chr10	99171750	99172750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	64115.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.55471105870492	7.65560081255637	7.34733907530029	7.30606874828993	7.72397847168497	7.25150662498513	-0.109475873911733	0.675437313070234	0.912155652131913
Merged-chr1-171271554-2	chr1	171271053	171272053	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 2 of 7)	intron (NM_020579, intron 2 of 7)	1225.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	5.51012306108522	5.46023455284706	5.45446956605594	5.27282461313972	5.26411299910622	5.33679217121583	-0.369275457311646	0.267229502111732	0.664581053738824
Merged-chr5-66113775-2	chr5	66113292	66114292	+	785.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B3|SINE|B2	-15613.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.92822532367884	6.42421072639418	6.33427270739416	6.53811917296354	6.48336527128118	6.7308846570705	0.549492751840331	0.0659816171690847	0.335249310954298
Merged-chr10-82814261-4	chr10	82813764	82814764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2141.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	6.67704159333164	6.86883113738046	6.21982013682994	6.69331144551225	6.90903987836879	6.11492007339987	0.00168057293125745	0.996112246865201	0.998961028701257
Merged-chr12-20227814-1	chr12	20227314	20228314	+	607.0	f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	587965.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	2.87481928945059	2.83244205596498	3.28003055962399	2.96209344868434	2.87103315553457	3.29839683805143	0.205528120468485	0.777057691713811	0.944993736018515
Merged-chr11-74491330-4	chr11	74490832	74491832	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MIRb|SINE|MIR	98826.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.25480806549838	5.2775347907352	5.44941894781941	5.79100451888715	5.71672357912282	5.75670591626851	0.818861396755313	0.0112080262554063	0.108961029169278
Merged-chr16-11133643-3	chr16	11133128	11134128	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	L2a|LINE|L2	904.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	6.22910784267006	6.21019614317872	6.24753547011765	6.25979405207093	6.26191182223156	6.28756544040637	0.0684741989628141	0.801075329613108	0.952752818604963
Merged-chr1-171578010-1	chr1	171577510	171578510	+	542.0	f1_c57bl6.idr	intron (NM_018729, intron 5 of 8)	intron (NM_018729, intron 5 of 8)	18817.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	2.74444550191375	3.13221153077263	3.09580271707482	2.8967378178716	2.8270420671463	3.27581969671148	0.03770549513649	0.959267573544931	0.990174309444982
Merged-chr5-90694656-4	chr5	90694164	90695164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54137.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.7761846296102	5.7555507940627	5.56255660620904	5.12872796693654	4.61302342215339	5.42766660542087	-1.22262186651777	0.00242305044591374	0.0358239483837225
Merged-chr4-99716101-2	chr4	99715601	99716601	+	973.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081264, intron 1 of 14)	B1F2|SINE|Alu	471.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	5.37297365618778	5.4692282712126	5.19097355023963	5.50982811523343	5.24062168038378	5.35412893923446	0.0220425264888164	0.949691862335189	0.988243921877722
Merged-chr15-64128542-2	chr15	64128042	64129042	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-68094.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.27056086083859	4.4272868109188	3.88386177500607	3.91336743497625	4.14703566894522	3.95594114988498	-0.587518050530678	0.260317869322435	0.657735007609049
Merged-chr2-130179376-4	chr2	130178918	130179918	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009225)	promoter-TSS (NM_009225)	-54.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	7.59402522137618	7.8859863096457	7.66543716853262	7.50034958313243	7.63326965477204	7.33335447003202	-0.322007299010684	0.177730191193484	0.55882263155115
Merged-chr12-32487047-2	chr12	32486547	32487547	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108258.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	3.41559126542056	3.44715658991058	3.46987664898196	3.28926216755109	2.9855633307394	3.37862147716572	-0.904179492233307	0.158832350273886	0.530640094820103
Merged-chr13-9424079-1	chr13	9423579	9424579	+	649.0	f0_balb.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	147554.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.65095749226103	4.20952097656926	4.42883616447467	4.71825966695133	4.70249241261067	4.95749900407446	0.831565879998967	0.0598395776251852	0.316648065561207
Merged-chr17-65663909-4	chr17	65663402	65664402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-21698.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.19037389701339	5.31386987640851	5.31269943210083	4.87054542252795	4.8399748673802	5.19143012362031	-0.647416208532134	0.0814369077261227	0.377489662088061
Merged-chr10-30811098-4	chr10	30810599	30811599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.68203073588978	3.83869745487059	3.4586926505864	3.5685346654548	3.41892725849871	3.64238273126689	-0.477105136509583	0.410656592793172	0.783515942609302
Merged-chr3-135630144-4	chr3	135629653	135630653	+	963.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	61394.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.66625093647264	4.24495047961523	4.71983376368259	4.75309207023613	4.90083042547985	4.74732455029724	0.596178963420311	0.169265573563632	0.545964641046737
Merged-chr5-64379987-2	chr5	64379487	64380487	+	781.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87955.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	7.45604846038305	7.40748931050279	7.51087950424853	7.47622859282628	7.60788222565387	7.6972288809844	0.202107183659851	0.368802261821582	0.753638793969867
Merged-chr10-67180658-2	chr10	67180158	67181158	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-5092.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.50866049993949	5.72224532411476	5.53669698328082	5.54320805413491	5.81586971415561	5.78644110148287	0.231909312571669	0.475742499615147	0.822164615518342
Merged-chr8-6117996-2	chr8	6117502	6118502	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1012715.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	2.2944657663167	2.34912007799947	2.3064533916505	2.56817003945825	2.76448661002001	2.89012775572351	2.82239591450538	0.00208713580682443	1
Merged-chr15-27671818-4	chr15	27671334	27672334	+	970.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9708.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.37815021995034	6.58283138856372	6.60510357730124	6.49766081073267	6.44633215569267	6.29927369773353	-0.16256184692538	0.548695072980318	0.859921640000495
Merged-chr19-53403951-4	chr19	53403490	53404490	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13356.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.41823318123802	4.18223200288289	3.77445915550097	3.59454929773837	3.72958891127693	3.55202766164542	-1.65412350059437	0.00442763360757614	0.0561845912332791
Merged-chr2-103655828-4	chr2	103655310	103656310	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89500.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.16770022348223	4.88004205516889	4.83109917836853	4.84139729397434	4.88840692413454	4.89711145845456	-0.21879931588932	0.573814585699818	0.870325272361113
Merged-chr17-32947444-4	chr17	32946969	32947969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130882)	promoter-TSS (NM_130882)	-108.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	6.61872469479636	6.77448459371535	6.8821426601991	6.34139939318676	6.70629067343035	6.40492843520621	-0.401746516601679	0.149735241107588	0.516223009447192
Merged-chr13-30974586-2	chr13	30974086	30975086	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-539.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	3.65965894409223	3.56725377741271	3.57329654197426	3.4483863742532	3.53182573981925	3.84352650550929	0.0316634006280349	0.955838943063544	0.989783387008628
Merged-chr13-41520988-4	chr13	41520495	41521495	+	884.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33635.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	7.46733284610084	7.55302546192355	7.51219675468606	7.39866992775369	7.55083440223123	7.17654474384671	-0.171749253749589	0.470966470054493	0.819784909739855
Merged-chr3-84654294-4	chr3	84653805	84654805	+	806.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11887.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.39543017157151	4.18751469563998	4.40338389362678	4.25882406639743	4.48450290160784	4.47010201152965	0.211480169340903	0.638453576418095	0.897576536084903
Merged-chr6-145863583-6	chr6	145863009	145864009	+	914.763916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024469, exon 5 of 5)	exon (NM_024469, exon 5 of 5)	1911.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	4.31109786150948	4.32584205816732	3.7746639443403	3.3385146711682	3.19971096242378	3.43440187229842	-3.21557709340395	1.18707144999331e-06	6.30234989866453e-05
Merged-chr2-127310886-2	chr2	127310386	127311386	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25273.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	2.98585180396273	2.973167658593	3.07334816653415	3.31655647163197	3.07361820124606	3.2613508688499	0.923299484043718	0.159170242121745	0.531158781765317
Merged-chr15-77837893-4	chr15	77837396	77838396	+	894.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	4279.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.15657929492611	4.07584234365083	3.76110799028581	4.20564328619236	4.24611807946145	4.65058873076618	0.981431675178526	0.0596701503103138	0.316235875878998
Merged-chr19-32933509-2	chr19	32932993	32933993	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175916.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.03340697323307	2.69131125211073	3.0718219382008	3.05147512491443	2.80647436933987	3.1437611138514	0.293734396920147	0.687524930108878	0.917163788391121
Merged-chr4-41349003-4	chr4	41348523	41349523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	27.0	NM_023305	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	8.64133575042773	8.54423022348384	8.18056486035266	8.4612833284854	8.6435040828204	8.14459718314119	-0.0505171153540365	0.840025996257316	0.962819298477451
Merged-chr1-86394482-4	chr1	86393988	86394988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5127.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	6.61931618876382	6.74084057393071	6.26639298909229	6.48629042558076	6.89086443229893	6.50646738570849	0.132575610468343	0.65723736372943	0.904798742244684
Merged-chr7-67246241-2	chr7	67245741	67246741	+	645.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	B1_Mus2|SINE|Alu	23625.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	5.1032017552452	5.24477345854818	4.62822521239012	5.11972550156487	4.76927491814042	5.15775451126641	-0.0221312674651638	0.958386739194965	0.990034569981835
Merged-chr2-158144927-1	chr2	158144427	158145427	+	1000.0	f0_balb.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1465.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	8.74408172650342	8.91215602381324	8.59612104989835	8.788223109268	9.05933271872163	8.52209384902705	0.0752916882820817	0.751852752920711	0.938016588905039
Merged-chr4-156164590-2	chr4	156164090	156165090	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021604)	TTS (NM_021604)	32898.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	3.72172772552095	3.72410541378956	3.55753499317992	3.62278076837937	3.82903532955818	3.93758267061059	0.411124247869418	0.452575387464969	0.809456767794566
Merged-chr1-156673402-1	chr1	156672902	156673902	+	627.0	f1_c57bl6.idr	intron (NM_023141, intron 2 of 5)	intron (NM_023141, intron 2 of 5)	937.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	6.94876117583073	7.23260891567745	6.8669240358181	6.75939325815898	6.83965161107353	6.56463826752687	-0.459675775792078	0.0849047389870027	0.38583032878143
Merged-chr4-155892246-4	chr4	155891789	155892789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	414.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	6.56862059510435	7.16337718816865	6.84650990053174	6.89662943474274	6.99438442570393	6.87554419486917	0.0586450398877401	0.834958233912162	0.961434055314855
Merged-chr1-151422376-4	chr1	151421883	151422883	+	687.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025819, intron 2 of 19)	intron (NM_025819, intron 2 of 19)	6052.0	NM_025819	66875.0	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	4.09273450809725	3.73213962024363	3.78471701392293	3.71866349357142	3.47826399812959	4.09196808927047	-0.325300955951671	0.577594942912238	0.872148826251218
Merged-chr3-19188226-4	chr3	19187733	19188733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356295)	promoter-TSS (NM_001356295)	-62.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	5.92918585742025	6.22682018786914	5.94714571469236	6.09809229829593	5.89733867798926	5.98473821679024	-0.0948357229550451	0.753897924787753	0.938585150381377
Merged-chr8-104535635-5	chr8	104535171	104536171	+	894.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301164, intron 1 of 6)	intron (NM_001301164, intron 1 of 6)	971.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	6.06635842022913	6.01264274011579	5.92072806436683	5.92541929033416	5.97246082910997	5.54334913892369	-0.285371063746466	0.365923988474543	0.751005707138497
Merged-chr7-83639267-3	chr7	83638765	83639765	+	920.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023377, intron 5 of 5)	intron (NM_023377, intron 5 of 5)	7248.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	3.32566980994541	3.46806853401272	3.7469939900563	3.56903699339604	3.15148446566431	3.72012128865811	-0.0834519635362898	0.896771206467947	0.97587199430405
Merged-chr2-91210698-2	chr2	91210198	91211198	+	697.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028119)	TTS (NM_028119)	7786.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	3.38727900827115	3.05351300565367	3.7111335072403	3.14787042689031	3.11711884930139	3.54096847885971	-0.493102444708358	0.475001157622241	0.821727753368561
Merged-chr18-20750073-4	chr18	20749579	20750579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3675.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.83489009481951	5.7107049764611	5.53381495522065	5.77908950563416	5.79227634192185	5.23254317341213	-0.117350994755009	0.740884795456778	0.934712654423072
Merged-chr2-102830393-2	chr2	102829893	102830893	+	691.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039151, intron 5 of 8)	intron (NM_001039151, intron 5 of 8)	71272.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.33363878476578	3.24710922998606	3.60497324874899	3.27716560005644	3.15403860988204	3.62507959819968	-0.147895075286303	0.817626018371016	0.956767881392089
Merged-chr13-81134573-4	chr13	81134067	81135067	+	758.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	RMER10A|LTR|ERVL	170493.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.53170510553642	6.62508543954862	6.59111417863162	6.63470305366471	6.7821864435052	6.65016090855113	0.177931500378716	0.48683121759115	0.828000162568208
Merged-chr10-7936720-4	chr10	7936230	7937230	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	16335.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.59897314558737	4.56746777224785	4.44507889819047	4.47760340773164	4.20417400938426	4.28645038348259	-0.558113040969374	0.207339413822032	0.598105800717372
Merged-chr13-98820835-4	chr13	98820433	98821433	+	735.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5484.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.61261026058718	4.25028798700858	4.94992193972685	4.23743786888004	4.14872006891404	4.48136527780253	-0.852508396808057	0.0810381575601208	0.376667107025062
Merged-chr1-170796650-1	chr1	170796150	170797150	+	781.0	f0_balb.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71121.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	5.54325736408205	5.34240424224636	5.63732658192184	5.08100291660506	5.28254714652869	5.6736088339352	-0.289723048299724	0.43214982785538	0.797270167804312
Merged-chr16-57130973-4	chr16	57130479	57131479	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	9265.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	4.90219807010581	4.81841653346254	4.58502137400421	5.40955496862394	5.64060223019439	4.74910822522347	1.14780223123277	0.00961792982875494	0.0978790258929859
Merged-chr8-105858702-4	chr8	105858199	105859199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1834.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	6.68290836612651	6.51204098910799	6.64982285598544	6.99925095807627	6.89981763970655	6.9625069754098	0.52702494148358	0.035082515725903	0.229854013269365
Merged-chr6-124849902-2	chr6	124849402	124850402	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013534, intron 9 of 14)	intron (NM_013534, intron 9 of 14)	7785.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	3.46598198668882	3.3276724830311	3.36343751547302	3.11433799320699	3.3439553165832	3.379035544097	-0.409046241582438	0.508350910660375	0.839818423824339
Merged-chr17-65931638-1	chr17	65931138	65932138	+	545.0	f1_c57bl6.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	19549.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	3.37609941221604	3.20797875577744	3.0459608109616	3.26146105511802	2.97811323810575	3.56672611039727	0.268240362782328	0.699154768461123	0.920515737149593
Merged-chr4-138207094-4	chr4	138206606	138207606	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172703)	TTS (NM_172703)	-9506.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	5.21463582080197	5.28315364959941	4.87530914417363	4.75132777036589	4.27853366354822	4.42486813607	-1.47816395434683	0.000675301533075812	0.0133247545563605
Merged-chr7-88185356-3	chr7	88184882	88185882	+	701.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92703.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.47666902996901	4.36732763396294	4.44930894075316	4.52359604561352	4.03093923685565	4.38816535353059	-0.279389595024983	0.55221695124095	0.861546661145201
Merged-chr11-77185185-3	chr11	77184681	77185681	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176965, intron 1 of 17)	intron (NM_176965, intron 1 of 17)	3787.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	3.0523575545758	3.36581586071401	3.31619606159427	3.04937363300062	2.80008414909006	2.85175515154337	-1.61925969833834	0.0239785022050591	0.182077314425859
Merged-chr15-76309689-4	chr15	76309199	76310199	+	941.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	4.73484419474015	4.53192800521178	5.06953975352232	4.637448831238	4.70998940678197	4.50882621099489	-0.369420058977532	0.394909175403822	0.772579826044138
Merged-chr2-129310848-4	chr2	129310486	129311486	+	931.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.98526836289567	6.6628212701031	7.16098399463684	6.68163078605345	6.61646869234537	6.98694532364907	-0.282251364402212	0.31934550049882	0.713383279786989
Merged-chr7-80144022-4	chr7	80143533	80144533	+	830.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28683.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	5.91086408083594	6.02120295359698	5.80692747718483	5.68087163757844	6.06969651518688	5.73713207901102	-0.119491839167207	0.708774913780435	0.92375127577894
Merged-chr2-34826213-4	chr2	34825720	34826720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	15.0	NM_001164770	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	7.46007112345537	7.96374964881745	7.45966093350726	7.3458976607652	7.57025851864706	7.51667273846511	-0.25590006035033	0.329565381102328	0.721399184090983
Merged-chr7-92637506-2	chr7	92637009	92638009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-367.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	7.87505328256325	8.36926740352504	7.85353418897179	7.9288224232061	8.56774235548705	8.05850624943526	0.227704116597893	0.424708193341646	0.792812153061468
Merged-chr2-128713727-2	chr2	128713238	128714238	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	14823.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.38110071827222	6.32459768496589	6.50958421698569	6.58506734357148	6.77701067100018	6.28122183670964	0.282583996737349	0.323451366318556	0.71668986599242
Merged-chr13-74367025-2	chr13	74366525	74367525	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3025.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	2.58370766563575	2.55245970997247	2.80478597634866	2.82454740865208	2.8534427570701	3.10685856316964	1.51038862481188	0.0466950849755727	0.273397853419545
Merged-chr5-45580559-3	chr5	45580075	45581075	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021416, exon 5 of 16)	exon (NM_021416, exon 5 of 16)	-58700.0	NR_102378	319251.0	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	2.72791563749455	2.62141085826579	2.78639019649	2.65728251314074	2.57394893503149	2.79916047410338	-0.197175152666514	0.791588240973125	0.949796307822746
Merged-chr10-96379229-4	chr10	96378744	96379744	+	971.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153037.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.61846862441778	5.4203720070195	5.51158542806541	5.32596594625907	5.47408722043942	5.6015957205818	-0.0996040591713127	0.765307818679888	0.942137701159565
Merged-chr15-36938735-4	chr15	36938245	36939245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	68657.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	4.6418808387676	4.64836044831695	4.61398241633226	4.75079893753681	4.60381259417272	4.51126462780639	-0.0166756109481079	0.967654562280171	0.992581088872982
Merged-chr11-60803887-3	chr11	60803400	60804400	+	612.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	PB1|SINE|Alu	7365.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	4.14114785323527	4.06430000137573	4.13580098677257	4.65976514678015	4.29172308596575	4.59580042885247	1.07918669915183	0.0204051553764307	0.163571499861469
Merged-chr6-82997913-4	chr6	82997411	82998411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	35560.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.79254450289381	7.92265401306306	7.70173505652297	7.77596252104316	8.18718073937446	7.72186207583286	0.156189947693603	0.526591626386802	0.849575940031528
Merged-chr4-33280749-2	chr4	33280249	33281249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29562.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	2.95462437427005	3.05809096935444	3.36374810516502	3.09170304316614	3.04289915005323	2.9218836684431	-0.474659749702364	0.49079190965567	0.830181469396006
Merged-chr11-89021079-4	chr11	89020574	89021574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009546)	TTS (NM_009546)	21671.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.62922281950697	7.40628061088725	7.15278606899776	7.18587944864636	7.34869193017988	6.99314230880579	-0.334995850462583	0.203219205110747	0.593085602709657
Merged-chr19-34640797-4	chr19	34640316	34641316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008331)	promoter-TSS (NM_008331)	-73.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	6.60157937248912	6.57019004536043	6.7581137332118	6.95264749938326	7.2940800613085	6.96265361047321	0.693360629406377	0.00815987276034369	0.087249075073715
Merged-chr13-107101770-4	chr13	107101271	107102271	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79201.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	3.80723167741937	4.1178976704796	3.93490350504347	4.00415889108467	3.99848399227935	4.27556715625843	0.382816215395454	0.452357203146367	0.809370729412253
Merged-chr10-34283958-2	chr10	34283456	34284456	+	712.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009433, exon 1 of 1)	3' UTR (NM_009433, exon 1 of 1)	1766.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	5.29575974160749	5.47778346246588	5.490155981551	5.56428403255064	5.4222413830432	5.13503956964687	-0.050930768711377	0.884917417553914	0.973538624783452
Merged-chr9-40802254-3	chr9	40801753	40802753	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031165, intron 2 of 8)	intron (NM_031165, intron 2 of 8)	980.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.54248422382699	6.38563160852098	6.16606348508184	6.72126994083468	6.65657275470897	6.56365666553559	0.428612035514313	0.119314603816724	0.461764165320091
Merged-chr8-57427369-1	chr8	57426869	57427869	+	546.0	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-28554.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	2.66800761164661	2.81522201476618	2.62560491605881	2.34931212885813	2.20083610259316	2.37041355504954	-3.03114484971164	0.0020290436226095	1
Merged-chr7-80754230-4	chr7	80753715	80754715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49116.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.0874784307726	6.04406135167493	5.92201743366683	5.53767519435863	5.57213954852719	5.70730687408899	-0.760113417605242	0.0126565104033724	0.118594923158086
Merged-chr17-87397326-4	chr17	87396831	87397831	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	30410.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	2.83458267368826	2.84243074085556	2.86631671168693	2.63610388719588	2.61787066160541	2.93850305858626	-0.602727178698428	0.416407976989773	0.787340667542254
Merged-chr1-152795081-4	chr1	152794616	152795616	+	735.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5037.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.77706360177469	4.53565465182526	4.33736667112076	4.99562284041905	5.09063261191523	4.92251924839883	0.985225431941633	0.0189298373035695	0.155720603297619
Merged-chr16-3261354-2	chr16	3260854	3261854	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-331044.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.94399747696086	3.47357506661717	3.07944402754281	3.2677215452003	3.20331959742998	3.21372469186131	0.144048699518086	0.834135529139687	0.96125905917477
Merged-chr15-96566324-4	chr15	96565830	96566830	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75632.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.09496134860694	4.94502780447487	4.8220204644673	4.69630141365676	4.61033201866308	5.25334848874158	-0.200704734291075	0.640499828159516	0.898483031109382
Merged-chr10-4093008-4	chr10	4092501	4093501	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 24 of 27)	intron (NM_001170785, intron 24 of 27)	119926.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	3.81610606766987	4.14078382180687	4.06982749328473	3.51342572583969	3.49357301092849	3.52899599851671	-1.71304513670362	0.00235065464010612	0.0349398483912022
Merged-chr10-12963592-4	chr10	12963070	12964070	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	689.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	5.90502684364589	6.23099822888201	6.22788597796159	6.57554978820673	6.53752348075846	6.59842050340434	0.728266677346741	0.00969254614056126	0.0983533389346123
Merged-chr4-8515671-4	chr4	8515159	8516159	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19985.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	2.19416377658013	2.37823266180522	2.40306252380412	2.13730750203815	2.24615377283379	2.14973483046791	-1.0133144128071	0.256748260311831	1
Merged-chr2-34800620-4	chr2	34800134	34801134	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145522)	promoter-TSS (NM_145522)	-722.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	6.32108802452033	6.68724939088744	6.3709810225421	6.2246459192423	6.68428196250894	6.67434947973414	0.113097824764961	0.706962540377029	0.923161381966479
Merged-chr8-75155071-4	chr8	75154574	75155574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45565.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	5.59132747961213	5.29925624139793	5.30594088006825	5.37646173669491	5.3383356448903	5.40088205777825	-0.0817170030703362	0.81209659738162	0.955468494621222
Merged-chr11-11689095-4	chr11	11688595	11689595	+	968.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	-1082.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	6.2031310708599	6.34642811874243	6.20575498907553	6.35774681034047	6.53560350612416	6.40528504084359	0.300298188231057	0.272303704150433	0.669637268440396
Merged-chr11-101449963-2	chr11	101449463	101450463	+	862.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	B2_Mm1t|SINE|B2	1551.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	4.00845618505483	4.01536011114014	4.05213741250803	3.62664264835294	4.07512879914609	4.11999481055251	-0.191838842191866	0.717059661205624	0.926979087819795
Merged-chr14-77836925-4	chr14	77836393	77837393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 5 of 5)	intron (NM_025384, intron 5 of 5)	-37925.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	7.11842374148227	7.04392634490978	6.99969986495066	7.15344636993048	7.44529397621481	7.37155629159405	0.410574073148814	0.0891640675209692	0.396719990642918
Merged-chr8-122908605-2	chr8	122908105	122909105	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	60231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	2.95842437589406	3.11147638730988	3.00897061122331	2.92800382636882	2.79757618664234	3.40788973649572	0.166984919666262	0.818279850965387	0.956893875468237
Merged-chr5-121389915-3	chr5	121389407	121390407	+	885.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4292.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	6.23280057168464	6.34967917051531	6.64680656245123	6.74797516543789	7.03539086483127	6.89884249693939	0.779714081597522	0.00476839076210028	0.0592722226669913
Merged-chr14-26994425-4	chr14	26993967	26994967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5895.0	NM_010420	15209.0	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	3.96760974733182	3.98885803499736	3.64771382849638	3.95380168793961	3.67514900140028	3.88163614498013	-0.149557441550121	0.782445802840229	0.946538394119619
Merged-chr8-84872845-2	chr8	84872343	84873343	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_031759, intron 2 of 3)	CpG	585.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	3.4511599498095	3.38823359636034	3.34674205663116	3.44540297725037	3.24406466812884	3.41834187708467	-0.118892042974254	0.842427155124871	0.96302520640257
Merged-chr15-58705518-4	chr15	58705058	58706058	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117869.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.68259810633118	4.60518128819361	4.71741754501261	4.7256143248727	4.74513881150112	4.53692350747479	0.0333268761224362	0.93481107436632	0.985727536128156
Merged-chr1-181138889-3	chr1	181138378	181139378	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 4 of 22)	intron (NM_026171, intron 4 of 22)	5326.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	4.11872813487107	4.15143793065726	4.44084669529114	4.97946620016677	4.8447191643917	4.82819106758186	1.62648874699693	0.000172764474631457	0.00444782995208364
Merged-chr19-44332456-4	chr19	44331940	44332940	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183216)	promoter-TSS (NM_183216)	-886.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	4.717489063669	4.57172394852095	4.27618309179525	4.75746783635044	4.50105528713233	4.29708556909464	-0.0153319405438462	0.973562608210376	0.994039095662068
Merged-chr7-110910667-3	chr7	110910143	110911143	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	5658.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	4.36616353128817	4.54918995497587	4.55659421112872	4.39417388519217	4.41751701797928	4.94382415832628	0.26102456844558	0.568805499351628	0.868743905837927
Merged-chr6-46450532-4	chr6	46450020	46451020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 12 of 23)	intron (NM_001004357, intron 12 of 23)	-793876.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.51721152351051	4.46927702846456	4.87470355870216	4.57490337973011	4.79431722265485	4.90447116343974	0.332184020193115	0.43708915106201	0.79976715856888
Merged-chr14-73143336-6	chr14	73142823	73143823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	CpG	538.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	8.27284471285181	8.03354292801868	7.99083026116604	8.4120117195497	8.33219411280932	8.10571481787647	0.260070965998088	0.249060155535602	0.646003458475719
Merged-chr11-69901684-4	chr11	69901195	69902195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-121.0	NM_001291118	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	7.72226082335085	7.6907402771395	7.51966050032143	7.68388622492637	7.69991460715823	7.70906769306763	0.0650516434199772	0.767068244030313	0.942573703853445
Merged-chr10-44604933-4	chr10	44604371	44605371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146123.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.02849001066064	6.03671095951371	5.70992866401978	6.18366724190147	6.0022109881246	5.71634667963743	0.0800810346547444	0.803372040758435	0.953485775766358
Merged-chr17-70829801-4	chr17	70829318	70830318	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	16959.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.97107011190469	6.76385563424578	6.95747596870456	6.64175722892081	6.99383595840211	6.80076888404948	-0.110493779625049	0.67444023756433	0.911852710156386
Merged-chr4-141444665-4	chr4	141444154	141445154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009541)	promoter-TSS (NM_009541)	-19.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	6.6555843415956	6.35832422506156	6.54969460512636	6.76309364652436	6.1516046117608	6.22589543034073	-0.183643039492522	0.559115086879689	0.864901733108576
Merged-chr17-17904827-2	chr17	17904327	17905327	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17003.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	2.12246724626997	2.02055142642907	2.0675215206418	2.21587107578151	2.1771627015599	2.40596858912689	1.43801992936878	0.114579096599155	1
Merged-chr8-84235743-4	chr8	84235241	84236241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	1301.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	5.79199564901231	5.19611744025969	5.0214611645563	5.26753446966039	5.12147882473304	5.08815844724552	-0.45886734579306	0.259549694558671	0.657131020381498
Merged-chr11-21237882-3	chr11	21237354	21238354	+	889.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1178.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.17258677233036	6.56617360362913	6.42412013987026	6.78359467946878	7.20279061369138	6.59406187036082	0.788012921897788	0.00965476006076754	0.0980655853437922
Merged-chr2-124685414-2	chr2	124684914	124685914	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31833.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.15910351973272	7.25964223088835	7.21048453621808	7.32462895362224	7.74916221217488	7.5765419955166	0.524480307821425	0.0323586062175893	0.218670909295312
Merged-chr8-46395471-4	chr8	46394909	46395909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-75628.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	4.36098913372975	4.44015692292707	4.27692069065495	4.47294742018143	4.15446658448122	4.55823468392558	0.0799318850039709	0.862109430723492	0.967996224966109
Merged-chr2-90478311-4	chr2	90477813	90478813	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	L1MB5|LINE|L1	861.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.90928366335852	6.60813244846725	6.80995472951489	6.19876409848403	6.25194058979903	6.44913457773627	-0.777096208940212	0.00456685288083068	0.0574450029490793
Merged-chr6-135297859-2	chr6	135297359	135298359	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12525.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	4.49089236755207	4.50661339874716	4.72783915944489	3.73222721852332	3.74768553268263	4.20117166195385	-1.93422378744385	0.000178645206115729	0.00456532871943415
Merged-chr1-84837839-2	chr1	84837339	84838339	+	743.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133975, intron 1 of 40)	intron (NM_133975, intron 1 of 40)	1465.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	5.68218663628179	5.79904137279796	5.64997788048488	5.90709774303848	5.92835371093001	5.62768140529926	0.220159147801592	0.483889388755573	0.826584678003739
Merged-chr4-53122896-1	chr4	53122396	53123396	+	584.0	f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	36999.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.18550203273427	6.34929176982873	6.43003349270438	6.28207566481283	6.34193978974248	6.62327949299891	0.15634284756147	0.581808033701348	0.873452104072563
Merged-chr8-33599568-4	chr8	33599046	33600046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017374)	promoter-TSS (NM_017374)	-75.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	5.82211613124226	5.37800891095393	5.89546805260161	5.86769394938238	5.49938358727427	5.79000114829515	0.0209996092101246	0.952292738835266	0.989068549972429
Merged-chr5-145139259-2	chr5	145138759	145139759	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033313, intron 1 of 5)	intron (NM_001033313, intron 1 of 5)	830.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	4.75375548688831	4.91640304041808	4.83442453752841	4.87291403135116	4.7088562914484	4.70535049181907	-0.165711743625584	0.673836077535002	0.911654130589777
Merged-chr3-31106722-4	chr3	31106221	31107221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	11663.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.37949982076762	7.1562566997715	7.24896910307267	7.33071985256105	7.34185608187122	7.06792821755703	-0.00765486716697183	0.974898893440981	0.994382735882691
Merged-chr9-104724548-1	chr9	104724048	104725048	+	743.0	f0_balb.idr	intron (NM_028719, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	155065.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.11655772138614	2.20668743658854	2.36990643557933	2.0331661032102	1.80394572863974	1.91015823312908	-2.95436296546525	0.0109778791528958	1
Merged-chr12-72761781-4	chr12	72761270	72762270	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	CpG	559.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	7.83748602830407	7.54016405381079	7.64705325285728	7.89060170123741	7.29863272003081	7.7126859171424	-0.0397269667103306	0.880797201213085	0.972620786559158
Merged-chr11-101082474-7	chr11	101081951	101082951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305982)	promoter-TSS (NM_001305982)	-114.0	NM_001305982	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	8.02201475796095	8.18099231693229	7.96106212092505	7.88893942543962	8.12048138130233	7.96364093733619	-0.0900025172424834	0.682393472475193	0.915072334923495
Merged-chr11-53375852-2	chr11	53375352	53376352	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 4 of 20)	intron (NM_033565, intron 4 of 20)	25085.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	3.30514335657275	3.19268895887712	3.18670039134463	3.18975156416173	3.1760415876425	3.47784923903416	0.205101430865093	0.745311193954004	0.936116619770028
Merged-chr6-57705118-2	chr6	57704618	57705618	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	Lx3C|LINE|L1	2663.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	2.68311832169622	2.6105624728025	2.80865091396562	2.72508433745136	2.67655148567848	2.82147498492115	0.214688808617626	0.769888847130028	0.943288465925629
Merged-chr7-63907311-5	chr7	63906802	63907802	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	B1_Mur3|SINE|Alu	-9555.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.79193085899178	5.98298989749596	6.00821544196766	6.07745317162032	5.86728353805214	6.25297276349419	0.238669287782416	0.438024419609359	0.800385091395032
Merged-chr12-69683770-4	chr12	69683270	69684270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1918.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	4.9728275298989	5.21926947198668	4.98964772138967	5.19624016945511	5.40769600319874	5.3552000519945	0.515808507585108	0.154612835989195	0.523896269417052
Merged-chr13-118775350-4	chr13	118774852	118775852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	60653.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	4.28281522378124	4.13278219375484	4.77634027467628	3.80323759448067	3.5055903480563	3.92992506660264	-2.01233172400608	0.000386111046127854	0.00855593286982862
Merged-chr6-87503067-4	chr6	87502542	87503542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-6715.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.48155763200661	7.21095524346991	7.156044889431	7.10362976745803	7.26228631876747	7.13806845970488	-0.183308044366464	0.456306132122673	0.811531402057786
Merged-chr10-60744744-3	chr10	60744249	60745249	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	8033.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.64031670249844	5.44469189929348	5.49974203312148	5.29426359005721	5.55369784059954	5.38314145359016	-0.211165836834178	0.531774351466578	0.851792887243639
Merged-chr4-97775305-2	chr4	97774805	97775805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-2321.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.62538820796095	4.41930309256304	4.76873805804694	4.62597647127732	4.59121773869293	4.76011011841665	0.125185964244392	0.765976146663275	0.942315542034148
Merged-chr4-115829598-2	chr4	115829069	115830069	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	RSINE1|SINE|B4	1477.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	4.54202419732195	4.87342920733972	5.24167793117928	5.19021568085574	5.25366776111187	5.47397887084798	0.841328708320338	0.0410670233435729	0.252875370263599
Merged-chr5-138258998-4	chr5	138258523	138259523	+	646.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153161)	TTS (NM_153161)	3541.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	3.58461437219005	3.69603867830677	3.88676220117601	3.50966253569106	3.65179861487623	3.81268875851641	-0.210410635866258	0.705796888965759	0.922834459892351
Merged-chr1-185224069-2	chr1	185223569	185224569	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 2 of 34)	MER44B|DNA|TcMar-Tigger	-18857.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	5.14910007260669	4.9168907278552	4.91454156211062	4.84946805465029	4.85778698793577	4.9058652886493	-0.291944720913818	0.443914058821744	0.803884349333946
Merged-chr16-58477776-4	chr16	58477288	58478288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	RMER6C|LTR|ERVK	45638.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.90306151861885	6.43467531324617	6.81589847673496	7.08990024429196	7.08339204118285	6.76668254952455	0.408281639252675	0.145750374980939	0.509070948302647
Merged-chr9-114780348-7	chr9	114779649	114780649	+	980.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	1844.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.77787325465675	5.77521921291974	5.65582157859058	6.83624905231064	6.70238517949027	6.58191181598106	1.62014220863249	1.25036351932747e-08	1.1056349385356e-06
Merged-chr4-135240503-4	chr4	135239996	135240996	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	32264.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.0021381134779	5.53873540656182	5.51610153492367	5.58896729016149	5.20006464128646	5.49071278935134	-0.531423259284566	0.143287080801166	0.505346137384114
Merged-chr17-55749971-4	chr17	55749464	55750464	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139138)	promoter-TSS (NM_139138)	-20.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	6.16110589618431	6.21366294149309	5.8832194348089	6.05173103509754	5.84917867011661	6.04052847713285	-0.218471583834908	0.468439478326729	0.81864012166027
Merged-chr16-15948474-3	chr16	15948011	15949011	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	61225.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	4.96407047445615	4.9497030250694	5.08946051008188	5.02057755119541	4.70872836701248	4.9107215815857	-0.258380274801455	0.502953765669252	0.836691193058519
Merged-chr9-65772362-4	chr9	65771875	65772875	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	55189.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	3.57999794166925	3.20828087065115	3.56345396549464	3.41751584841733	3.1483611669643	3.77933995368957	0.0323431711545242	0.960767188607786	0.990386809359123
Merged-chr2-27676464-3	chr2	27675992	27676992	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-709.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.68787628886691	5.93334163173712	5.63397104430145	5.44665604806021	5.49963655543646	5.22942357359695	-0.669233703236659	0.0472188723666126	0.275222167327609
Merged-chr16-49755353-4	chr16	49754832	49755832	+	799.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028680, intron 6 of 10)	URR1A|DNA|hAT-Charlie	56038.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	2.35393471864019	2.35736914496141	2.45212423899703	2.5013700342324	2.31693595548865	2.71056882672688	0.778202565465744	0.346698130207456	1
Merged-chr12-85508471-2	chr12	85507971	85508971	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	34581.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.00469088541074	2.86748437111186	2.83094058181301	2.90898030831031	2.72903822290128	3.02474369863509	-0.0895837351395241	0.899910184708722	0.976728292075907
Merged-chr4-132351560-2	chr4	132351060	132352060	+	754.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_003270)	TTS (NR_003270)	2126.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	2.3137543240561	2.38406813003485	2.65328500467858	2.41265051955929	2.2136711903886	2.4189961364823	-0.666701417407304	0.433910521079471	1
Merged-chr2-84594051-2	chr2	84593551	84594551	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	55429.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.05102487245483	5.15559718466557	4.87385388105635	5.11124815834849	5.00850626831305	4.73620030027525	-0.149343430905741	0.70153442018292	0.921353558219906
Merged-chr11-88993781-4	chr11	88993294	88994294	+	948.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5609.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.89210716473312	3.77279759328919	3.53853484510464	3.52330212921847	3.6430963811091	3.87258916245906	-0.223786761359222	0.693142429496851	0.918830576287622
Merged-chr11-110993270-4	chr11	110992776	110993776	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-4211.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	7.02441227506595	6.95187694660703	7.12729945349664	7.13509439516894	7.47013152046622	7.3684146723756	0.454477055870966	0.0646022545719435	0.331223390130154
Merged-chr1-36445345-4	chr1	36444830	36445830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310517)	promoter-TSS (NM_001310517)	-59.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	5.64814654024244	5.82817614530806	5.67939636718191	5.77163803058044	5.9506241526768	5.74174882507874	0.194925724634811	0.531595622678357	0.851732204413779
Merged-chr6-47878033-1	chr6	47877533	47878533	+	1000.0	f0_balb.idr	intron (NM_146175, intron 1 of 7)	CpG	478.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	5.53374732339638	5.40403644896404	5.80398203834959	5.51191729277344	4.90704217593244	5.42518568685381	-0.549913421681537	0.153621630482741	0.522554369357012
Merged-chr6-124828377-2	chr6	124827877	124828877	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	1107.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	3.995523532075	3.62608792576489	4.01284461182405	3.94019297038263	4.1615207219812	3.83154543660009	0.324410966614946	0.547288297766442	0.859256588783723
Merged-chr2-69884029-2	chr2	69883564	69884564	+	800.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110977, intron 1 of 5)	B2_Mm2|SINE|B2	1551.0	NM_029280	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	2.67185655944356	2.6405893203284	2.89419560987615	3.11100334223353	3.08640149186605	2.96810702898366	1.67197477498752	0.0224048255119414	0.173969832138636
Merged-chr10-19691992-4	chr10	19691484	19692484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20603.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	8.16876912573174	8.18281089765422	7.65191241537347	8.10376722139125	8.24967242186428	7.71801628888155	0.0264004909917046	0.922216864661712	0.982542868764899
Merged-chr12-36208667-3	chr12	36208178	36209178	+	819.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027699, exon 5 of 5)	exon (NM_027699, exon 5 of 5)	9540.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	3.80324772156572	4.09403337935401	3.72971225490482	3.40748765059817	3.41312798649091	3.58444255467132	-1.4943957129359	0.00955689269036811	0.0974044496545994
Merged-chr17-10383621-4	chr17	10383125	10384125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59023.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	7.35005436846641	7.26969098024864	7.3511142379551	7.10294619173807	7.3761201670486	7.32065111769873	-0.0728774368779163	0.75797397367722	0.940006510270311
Merged-chr16-10974602-2	chr16	10974102	10975102	+	737.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B4A|SINE|B4	18519.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.59697264691045	4.81369236327131	5.50513507742823	4.79083686162244	4.65678788868445	5.51775205837923	0.0303984856305439	0.95227530067698	0.989068549972429
Merged-chr1-132008753-2	chr1	132008253	132009253	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	intron (NM_007923, intron 1 of 4)	1148.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	7.32722316687476	7.5899585103605	7.06588682361785	7.49453626907079	7.7852652173395	7.42890636869165	0.337415736315463	0.204275535667714	0.594785352742216
Merged-chr10-34267901-3	chr10	34267404	34268404	+	808.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14286.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	5.01510894068583	5.26803643909775	4.92289475995832	5.12186474314778	4.93433086477912	4.79093486754518	-0.265829611476222	0.495068861300009	0.832258300794288
Merged-chr12-73686020-2	chr12	73685520	73686520	+	942.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	101224.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.32109155061299	5.17063932844376	5.21853728115198	5.34331478634791	4.98629080600125	4.96629077156398	-0.26043938997547	0.48307063528917	0.826004252216208
Merged-chr11-118148112-4	chr11	118147616	118148616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-18897.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	7.11338950124962	7.15225551603637	7.26586209022462	6.3417866986685	6.36331823360318	6.81096478525139	-1.03474580527354	0.000146728073955334	0.00390062286826691
Merged-chr8-105331766-3	chr8	105331271	105332271	+	869.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 15 of 22)	exon (NM_177699, exon 15 of 22)	5407.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	4.71461907251406	4.47155492118617	4.67547289332376	4.87899123473801	4.80157429222966	4.81900050845029	0.491643885180189	0.222144547323943	0.617070381781888
Merged-chr2-66180498-3	chr2	66179984	66180984	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55691.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	3.46514177840972	3.8849303916593	3.60265148508953	3.83809710651457	3.62027240832546	3.44314792836503	-0.069002865468353	0.907726392009363	0.979037236663477
Merged-chr1-60180430-4	chr1	60179922	60180922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173444)	promoter-TSS (NM_173444)	-177.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	8.18718954709762	7.88005947220375	7.71925691311431	8.0092722853099	7.88255325812507	7.74860044827761	-0.08951046741922	0.71196938078346	0.924891945289204
Merged-chr13-52610670-4	chr13	52610171	52611171	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	13789.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.00949673322824	4.6763813754882	5.09689488066062	4.44773515252415	4.42309984962772	4.79007165811578	-0.887264716077486	0.0396202658679285	0.247427430376658
Merged-chr13-93428539-5	chr13	93428049	93429049	+	969.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71259.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	4.14355408470323	4.01620556020023	3.99808965260411	3.4742431968866	3.08975548766304	3.55173202536345	-2.53138456422027	8.61120686710322e-05	0.00250619552640058
Merged-chr9-104629406-4	chr9	104628868	104629868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	59885.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	6.57164824345172	6.7205754092616	6.63471003234469	5.64225764447124	5.85964716369682	5.77461298842513	-1.47730926787842	3.00172684055793e-07	1.87795253345221e-05
Merged-chr15-54920190-4	chr15	54919677	54920677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-31.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	3.74608881573011	3.76689614847529	3.8294724669927	4.25204608418065	4.37581923154496	4.19785217568115	1.50741840173534	0.00231667279374581	0.0345644091486465
Merged-chr4-134102574-4	chr4	134102082	134103082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045571)	promoter-TSS (NR_045571)	-1.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	4.14964108427857	3.98450845286948	3.93840057388336	4.1206023508361	4.25431496720253	4.15640067635196	0.427215083099183	0.375618977992417	0.758851065703868
Merged-chr17-36952777-2	chr17	36952277	36953277	+	703.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	-985.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	2.8450122333378	2.86875912076673	3.24767143045728	2.72903882951348	2.92324353070087	3.26591718066209	-0.0380439120379273	0.959513664155386	0.990229240416255
Merged-chr4-41135951-4	chr4	41135469	41136469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-52.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	7.45488118025716	7.42123227356306	7.585522367331	7.85498835230002	7.25086578215177	7.56659271288048	0.135971620209737	0.604185819493057	0.883003945319161
Merged-chr3-69004944-4	chr3	69004434	69005434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026641)	promoter-TSS (NM_026641)	196.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	7.41701846983219	7.44219440258449	7.02472811126242	7.30966095083773	7.3881390390418	7.42164956452368	0.0802380248599933	0.74662305897651	0.936300236930265
Merged-chr5-20681285-4	chr5	20680762	20681762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	200862.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.30121150642792	3.07397383638465	3.42651939294652	3.11158944799237	3.06883832078697	3.28350250908426	-0.492632272023664	0.448516875478034	0.80725470300829
Merged-chr16-36663717-4	chr16	36663219	36664219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	2358.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	8.19738197927244	8.53198371870352	7.77065790774017	8.07690970667527	8.6237094974847	7.69341336933561	-0.0158824046944808	0.960825065824876	0.990386809359123
Merged-chr11-107548503-2	chr11	107548003	107549003	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198298, intron 1 of 31)	intron (NM_198298, intron 1 of 31)	543.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	4.6262696427954	4.48038305140436	4.51516178765359	4.62272028657043	4.67278756985713	4.30914180657101	0.0316958236796009	0.941988299891181	0.987092317509512
Merged-chr10-99560898-1	chr10	99560398	99561398	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-48273.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.66364104530954	4.00947091975587	3.63900494743501	3.75961472951131	3.47360626400979	4.05519028226623	-0.0311221230602571	0.957998159218534	0.990000537228272
Merged-chr16-91767334-2	chr16	91766834	91767834	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	RSINE1|SINE|B4	37963.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.89939586741518	4.73654876314308	4.7593370011337	4.72982496180326	4.29909408520443	4.627767789982	-0.581806241346196	0.174425232899469	0.553678509865295
Merged-chr6-48444238-4	chr6	48443750	48444750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355746, intron 1 of 4)	intron (NM_001355746, intron 1 of 4)	840.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	4.59215616774967	4.15407941529543	4.47058035232276	5.1161142529065	4.48575483566271	4.82018525980371	0.982775244701667	0.0372169307802065	0.238073080476264
Merged-chr6-50244709-2	chr6	50244209	50245209	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 3 of 9)	intron (NM_018769, intron 3 of 9)	17060.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	2.82372749010402	2.89767633256258	2.92595889752484	2.68743855724538	2.60124913413412	3.2182354341435	-0.09995736468659	0.897746451939527	0.976134735553722
Merged-chr8-117524720-2	chr8	117524220	117525220	+	596.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	26445.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.66754424593434	2.7411138510484	3.07085795180218	2.86493294567738	2.88614482711591	3.14198108422901	0.65091687518918	0.37644382304241	0.759220718571954
Merged-chr5-75043980-2	chr5	75043468	75044468	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	673.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	7.41376539874775	7.80747621513028	7.24468630525286	7.70436271940363	7.57654365400939	7.750370400237	0.226405656636227	0.381319773477121	0.763080052613635
Merged-chr2-73372172-3	chr2	73371667	73372667	+	894.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14313.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	6.13296080133765	6.50433336295304	6.25017805176739	6.08690850767834	6.46368679825839	6.09464525453046	-0.116253761850307	0.705408758973718	0.922756484933722
Merged-chr2-160276157-4	chr2	160275671	160276671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.9607914979778	7.08113476974535	6.68000332950187	6.82075810175822	6.69383830207564	6.42824704495129	-0.406388061403837	0.142355954436429	0.503715686878622
Merged-chr4-20041804-1	chr4	20041304	20042304	+	1000.0	f1_balb.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	-248.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	4.0067657403161	3.93092810897741	4.28842171546662	4.15731254576286	3.99435012894093	3.72200865155501	-0.295241505918465	0.576364478922367	0.871585692229598
Merged-chr13-111896475-4	chr13	111895980	111896980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28544.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.99805028014255	4.99377274298941	4.99292491709286	4.59777212583195	4.8099183145672	5.2767936876937	-0.174839237591269	0.674450027745927	0.911852710156386
Merged-chr10-80402372-2	chr10	80401872	80402872	+	592.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025650)	TTS (NM_025650)	-2841.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	3.32921472877594	3.24210821590417	3.64936633000557	3.27224619276857	3.09215383155196	3.62184941004634	-0.277232360752196	0.673257815597675	0.91133113696298
Merged-chr11-29807572-4	chr11	29807071	29808071	+	872.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	18097.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.27462916334239	5.31462289152032	5.03172530098088	5.27554413069672	5.26163042614389	5.42450625384062	0.187645046007505	0.596190410861363	0.8798867145239
Merged-chr11-116445142-2	chr11	116444642	116445642	+	693.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033267, exon 10 of 14)	exon (NM_001033267, exon 10 of 14)	9205.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	3.05271986048039	3.18621800429588	3.31249457608906	3.71484052653219	3.52731688188809	3.70714329834206	1.84601011675707	0.00310908315684781	0.0432826821674741
Merged-chr5-117123300-3	chr5	117122802	117123802	+	824.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	3173.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.32441835379148	3.33093403006139	3.53796453821989	2.98161803238968	2.83135446592472	2.99695106700153	-2.17043136008482	0.00200782780124437	0.0310591812020714
Merged-chr17-46557521-2	chr17	46557021	46558021	+	805.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-1359.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	3.29625007149798	3.3395814812677	3.2667749387298	3.40616402051883	3.09658825306679	3.28109917928383	-0.157989817434907	0.800825328389687	0.952702190453274
Merged-chr4-10983856-4	chr4	10983362	10984362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23757.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.17524305524831	3.48159940067799	3.38638279592731	3.77810751017356	3.72322179297264	4.01766385016475	1.73098058008091	0.00425585400479812	0.0545305050864247
Merged-chr5-66293749-3	chr5	66293245	66294245	+	886.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302833, intron 10 of 12)	intron (NM_001302833, intron 10 of 12)	32904.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	3.56955160874287	3.42094698353957	3.57403565858441	3.92360984756978	4.01220060189	4.05023967195145	1.59301895397208	0.00338905136311479	0.0460552320467182
Merged-chr16-81437665-4	chr16	81437129	81438129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010954, exon 4 of 16)	exon (NM_010954, exon 4 of 16)	236932.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	4.09665713031924	4.3356597853038	4.32853643191915	4.4361753349264	4.45634808610834	4.25995098706848	0.362888914687431	0.426409171889317	0.793775990271191
Merged-chr10-75499890-2	chr10	75499390	75500390	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	17491.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	3.50323504940688	4.02607340270321	4.08989351517835	3.88649694412748	3.81420887265735	3.77299606127765	-0.21767294657496	0.701273486406612	0.921225520800058
Merged-chr8-33653113-3	chr8	33652615	33653615	+	993.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-123.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	6.524792269451	7.007945898419	6.95611472267283	8.10646419089308	8.31213502846008	7.98902623498265	1.90479179321222	3.22414243411195e-13	6.70686109143967e-11
Merged-chr17-28329832-2	chr17	28329332	28330332	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 4 of 5)	intron (NM_001357628, intron 4 of 5)	1267.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	4.17102776341168	4.42992706792159	4.26577209998776	4.37773428540558	4.41004865805175	4.50674855374711	0.34575266866243	0.440944941117605	0.80214575121368
Merged-chr12-78864405-3	chr12	78863929	78864929	+	721.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026114, intron 1 of 7)	intron (NM_026114, intron 1 of 7)	2357.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	5.61744670947584	5.67378064303868	5.93801761653214	5.78909447312067	6.03538537965169	6.02099430517762	0.382256607513384	0.223471175147665	0.618171194869911
Merged-chr5-97345316-4	chr5	97344824	97345824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	47006.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	4.13149530637073	4.08881134558341	4.22237275935415	3.82895992003818	3.74065043851802	4.20323059357166	-0.649296405962261	0.207429995072833	0.598198975150602
Merged-chr19-55868130-4	chr19	55867636	55868636	+	827.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-27185.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.74241244227279	3.72190727996937	3.581214201328	3.95293513505743	3.8135948888403	3.76363689824366	0.515835611301079	0.334560853481896	0.725027073042024
Merged-chr16-35490754-4	chr16	35490215	35491215	+	900.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028295, intron 1 of 16)	CpG	158.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	2.73577697537016	2.59260054775901	2.96666698085289	2.66321788755062	2.45076304947681	2.80884704842222	-0.673629237037606	0.394926240042465	0.772579826044138
Merged-chr2-181276217-4	chr2	181275723	181276723	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	11743.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.94368097957969	5.74473684767947	6.21513513249276	6.34226751983305	6.44693456803739	6.08432092897847	0.575039733556918	0.0640285765380481	0.32982664499337
Merged-chr13-98833312-2	chr13	98832812	98833812	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17863.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	6.75007355672841	6.71211114079097	6.5576192335772	6.49001029420727	6.56579219478808	6.49181392109522	-0.258983370208053	0.317295302750661	0.711216102754224
Merged-chr2-52960475-2	chr2	52959975	52960975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	102607.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.79508215901772	5.08009045140614	5.23696831724517	4.65160961837691	5.02925433101228	5.11419369852413	-0.210218336706415	0.608052443691184	0.884865293201163
Merged-chr7-44816855-3	chr7	44816365	44817365	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033136)	promoter-TSS (NR_033136)	-207.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	5.87078547991673	6.04903199104352	6.08915381457566	6.1896102868863	6.30502007561851	5.96627011967658	0.291666973994851	0.327513819944996	0.7197087001184
Merged-chr13-106936927-4	chr13	106936427	106937427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029665)	promoter-TSS (NM_029665)	31.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	6.2359526407835	5.99722449379769	6.19108880170548	6.16337744040904	6.17732446021846	5.68930565685158	-0.170740708897747	0.589146784001387	0.876753289776615
Merged-chr10-80101928-2	chr10	80101428	80102428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-741.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	6.60281833552443	6.44545105571981	6.82200385124951	7.32337670322109	7.21255807453052	7.02120180779696	0.882874291591167	0.000753696632357984	0.0144931748735164
Merged-chr9-37613673-4	chr9	37613163	37614163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	57.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	5.32411678583268	5.47765859992763	5.02482098389704	4.97685377574232	4.95136221964261	4.97903623273352	-0.692701338562659	0.0640679901013644	0.329853818983591
Merged-chr17-57113112-4	chr17	57112614	57113614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	4.84917733963894	4.60167919415484	4.50388249722161	4.73325241885671	4.84881615095902	4.81810783458449	0.309369882175135	0.451535732613803	0.809149268634971
Merged-chr11-72946541-4	chr11	72946059	72947059	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14610.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	3.46696979752277	3.45685704632669	3.53124272374987	3.65605413038015	3.44720618674437	3.31668136364246	0.00338196442446291	0.995419648107283	0.998961028701257
Merged-chr5-24422846-2	chr5	24422346	24423346	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007668, exon 2 of 12)	exon (NM_007668, exon 2 of 12)	684.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	3.33227678421595	3.27602208724768	3.6355826988505	3.35045035476847	3.23559206577055	3.65576842224599	0.00384034872603942	0.995109035678583	0.998961028701257
Merged-chr12-85384661-2	chr12	85384161	85385161	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-9944.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.28159151168941	7.21135349516597	7.41699800759936	6.85297251224862	6.9825971190166	7.22739586192501	-0.41876556941662	0.0938117422327169	0.408020484310726
Merged-chr15-73731910-2	chr15	73731410	73732410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6980.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	7.00536981643405	7.17401898401877	7.35381563932335	7.2794753199994	7.3033213643194	7.3358094359654	0.189651627792647	0.431357922369579	0.796881045962937
Merged-chr14-40958809-4	chr14	40958325	40959325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	8071.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.28208333924146	5.27569742693811	5.41492649871977	5.48636674532668	5.16205140457859	5.22958275403118	-0.0433580850024699	0.901997510474686	0.977392189525306
Merged-chr17-17589132-4	chr17	17588624	17589624	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	35365.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.95146452465374	5.08460518465419	5.0593344602912	5.31369253552002	5.43036461114682	5.25911147249988	0.635983441130235	0.0720897688227718	0.352642297719294
Merged-chr2-104494597-4	chr2	104494096	104495096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145824)	promoter-TSS (NM_001145824)	-107.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	7.68470319296167	7.90007477458783	7.90813222307226	7.98985645601225	7.69715400635946	7.94158638897489	0.0650368477590256	0.777219117495431	0.945038115626604
Merged-chr1-176068127-4	chr1	176067646	176068646	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	145796.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	5.14473584883477	4.92086743282783	4.36096673459969	4.73586798082887	4.60006539892186	4.61946083815472	-0.476322824528045	0.29750114811276	0.694173094123388
Merged-chr3-135597156-4	chr3	135596664	135597664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	94383.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.6338261403584	3.63436891256721	3.65043211577239	3.61819615777363	3.55005060378775	3.3229978832291	-0.460122192474694	0.425623888318105	0.793193856506818
Merged-chr17-28407659-4	chr17	28407169	28408169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42453.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	5.04308218601705	4.90845415505288	5.24648753333492	5.03194793556132	5.13560842583217	4.65216312749205	-0.203617168050987	0.614837524051475	0.887639829057119
Merged-chr11-88973937-4	chr11	88973430	88974430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016706)	promoter-TSS (NM_016706)	-5.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	5.05792843701632	5.15592481974527	4.99077572720693	5.10772155914417	5.07876984916985	4.98282632502515	-0.0296473679230548	0.935199951209002	0.985825268134524
Merged-chr6-97484791-4	chr6	97484321	97485321	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2999.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.90461002150669	7.07290147917669	6.80568843079243	7.49435356221364	7.5661660119514	7.30734098327264	0.78756604645122	0.00133590236464699	0.0226022293528969
Merged-chr1-85652069-1	chr1	85651569	85652569	+	635.0	f0_balb.idr	intron (NM_013673, intron 1 of 19)	RSINE1|SINE|B4	2081.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	4.55736663975196	4.64130412745011	4.39176299380698	4.36177499928487	4.56272389772446	4.36873933640538	-0.247151131204375	0.572630916336403	0.869896838396072
Merged-chr18-83713918-4	chr18	83713363	83714363	+	902.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	372699.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.17204331819452	4.38876238755417	4.35796008280764	3.58140355613305	3.66454744071203	3.82338544074972	-1.9364253875639	0.000249360918893065	0.00599850342273899
Merged-chr19-6679903-4	chr19	6679416	6680416	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-136846.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	2.92405480607934	2.81502683518781	2.90155786159317	2.9598884547047	2.73421704990934	3.09071614979652	0.240453929501267	0.734980842703583	0.932617455907478
Merged-chr15-103309492-2	chr15	103308992	103309992	+	779.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	946.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	3.41985572737557	3.38473683164274	3.48115473990805	3.4308665576712	3.15838058851949	3.60294145648569	-0.0986950099228935	0.872598193797728	0.970261003150518
Merged-chr1-171826286-7	chr1	171825779	171826779	+	859.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg2|LINE|L1	-13418.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.39481788288476	6.58908661078293	6.42985668073732	5.97589783586454	6.18662017039985	6.13069710654319	-0.61950544427294	0.0273993125988599	0.197354744003284
Merged-chr11-76624223-2	chr11	76623723	76624723	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46484.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.26564121240999	5.14174746085751	5.11339706553488	5.49162305853433	5.00912690800496	5.2777296824174	0.184551071950963	0.621087170019421	0.890517830251339
Merged-chr1-91033433-2	chr1	91032933	91033933	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-20011.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.22012800466743	5.16101872432164	5.35568545294067	4.85800418744103	4.87102759183795	5.11030547619429	-0.634020848699956	0.0859841162934294	0.388266185001677
Merged-chr5-75044629-4	chr5	75044124	75045124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	17.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	7.57483793019164	7.508418134476	6.97419918825872	7.62436247051285	7.31466077793065	7.36614456864147	0.0769591649852296	0.779433764394285	0.945754643349904
Merged-chr10-81435126-2	chr10	81434626	81435626	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7953.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	2.54745492741205	2.50299427994155	2.71082538538575	2.37210056447389	2.27336110429641	2.41122770700074	-1.53837770560853	0.0672022057118108	1
Merged-chr1-170950817-4	chr1	170950327	170951327	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23244.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	5.71334204199734	5.30255310261908	5.69961979200697	6.12848206773789	6.23740182532279	6.13924415527519	1.05110780794117	0.000961681767172245	0.017479321749217
Merged-chr10-120201526-4	chr10	120201040	120202040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	57.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	6.45419414956314	6.61856482222506	6.46651615227714	7.08580147221413	6.41890700938478	6.76150180872602	0.417784252213452	0.164585094870045	0.539207676744102
Merged-chr11-5485989-4	chr11	5485558	5486558	+	842.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34583.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.75170033451231	6.06944898810955	6.03701578403106	6.37809877191353	6.3461221089673	6.07537342718387	0.548988321694381	0.068408941278354	0.342159845268651
Merged-chr13-76099143-3	chr13	76098636	76099636	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	402.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	5.17909095225926	4.76096594530661	4.77935629427601	4.91678087479417	5.18574339443043	4.96206282104376	0.226728079042577	0.574384353715006	0.870632540375594
Merged-chr8-18899273-4	chr8	18898751	18899751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51620.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	3.63018561540914	3.87288513757946	3.82942101627404	3.45570098759166	3.51254451572761	3.75090995147494	-0.715803871270173	0.203152234086759	0.593047970473348
Merged-chr4-146495175-2	chr4	146494675	146495675	+	873.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-6825.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	4.00428656913514	4.06530376396865	4.15433469020707	4.17060325006602	4.02654845689021	4.35155406784404	0.306816337614612	0.524594658437102	0.84875211143974
Merged-chr9-35175922-5	chr9	35175339	35176339	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027030, exon 1 of 6)	exon (NM_027030, exon 1 of 6)	148.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	7.18121414060624	7.20730642726755	7.04251475733628	6.91689647708321	7.01528817529748	6.93546004409704	-0.290009745275227	0.225359139259548	0.620200471451538
Merged-chr2-166729848-4	chr2	166729350	166730350	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16018.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.2552547097513	7.13348019479423	6.61424471970417	7.12796628475136	7.10189928822218	6.52207894653147	-0.126545752450529	0.688302767385603	0.917193226920892
Merged-chr11-117832424-4	chr11	117831930	117832930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027827, exon 3 of 11)	exon (NM_027827, exon 3 of 11)	-6416.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	6.9724801645649	6.57469926076908	6.59569786860163	6.68886219692159	6.55816964730599	6.49443835996294	-0.234429573210266	0.398725484778736	0.775380942917122
Merged-chr18-39636745-3	chr18	39636245	39637245	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136752.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.82746230415513	6.85592327335366	6.89455175271254	6.93581451046154	7.06213358450005	6.85067546025856	0.156214935394946	0.524557714627309	0.848725345027108
Merged-chr18-67607569-4	chr18	67607104	67608104	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33751.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	5.94545959616233	6.05397569443976	5.5840959893599	5.44667147189788	5.7249216667999	5.73070774397065	-0.4463555464898	0.181953730275965	0.564609583770372
Merged-chr16-92670501-3	chr16	92669999	92670999	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	26830.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.63218783000313	4.47009263553128	4.46391151175222	4.31653228765749	4.56377749444512	4.30618172017056	-0.290326758346671	0.512467609754184	0.841971478201334
Merged-chr5-124552242-2	chr5	124551742	124552742	+	783.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	-622.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	6.15403797297105	6.13849188164922	6.27379113687698	6.47940784346422	6.44266541710211	6.37267190054072	0.413740743607673	0.126589454788347	0.475549804679232
Merged-chr5-125189754-5	chr5	125189212	125190212	+	977.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10498.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.21044208267794	4.06797987808258	3.94365715291675	4.01226707738746	3.91367299947171	4.06285245360256	-0.270922852547791	0.582953867916049	0.873850408743513
Merged-chr9-53650928-3	chr9	53650402	53651402	+	664.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 3 of 17)	intron (NM_001161618, intron 3 of 17)	16605.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	3.60448437166696	3.98751326205556	4.06920873192865	3.64319192584197	3.67894117673895	3.59401787493091	-0.838233593541846	0.136417902663615	0.493460020207543
Merged-chr1-156002549-4	chr1	156002053	156003053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29298.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	6.04866600154833	6.01782020363732	6.19729799609225	7.14909869425888	7.32062885411303	6.80580645828025	1.64827564730957	3.72942769072407e-09	3.73877372638275e-07
Merged-chr8-3313619-2	chr8	3313091	3314091	+	634.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER10B|LTR|ERVL	-33974.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	5.19322352698016	5.36599996618907	5.50532186706508	5.28843288302532	5.19080591035589	5.695363019761	0.0822071864453962	0.82316461015173	0.958214218900685
Merged-chr4-101159599-4	chr4	101159092	101160092	+	860.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 17 of 24)	intron (NM_146145, intron 17 of 24)	90554.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.40578959210806	4.36292649979757	4.3086433743423	4.33865428043769	3.60725148206024	3.94054203987499	-1.0129010552581	0.0651216159122359	0.332770809074109
Merged-chr13-97241099-4	chr13	97240578	97241578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-27.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	5.62142843560525	5.78051231010119	5.73023782404774	5.65022872860794	5.76507184803341	6.04754695744763	0.199567658969207	0.532827631802541	0.852011692079098
Merged-chr13-4942701-1	chr13	4942201	4943201	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-333537.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	2.73568144227853	2.78737578955657	3.01628022278917	3.18068455973889	3.20404739974822	3.85047194580114	2.71676605117608	0.000443609750605954	0.00956472067337451
Merged-chr5-29574472-4	chr5	29573975	29574975	+	926.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133907, intron 1 of 22)	RLTR45|LTR|ERVK	5233.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	4.84554663424749	4.87386283079225	5.19490790968983	4.63661111632421	4.57614471181957	5.31416423156109	-0.216730684388474	0.631055308515914	0.895001621145616
Merged-chr10-51553974-4	chr10	51553476	51554476	+	854.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36484.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	3.22986290223215	3.04255007793012	3.05297562319857	3.00535875237899	2.82190549286796	2.94298786191347	-0.89686343286911	0.191230657443989	0.577822466760773
Merged-chr13-28959255-2	chr13	28958755	28959755	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5556.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	3.69760726871857	3.60133294414187	3.46075952947185	3.34128181725276	3.1640713232563	3.47687276557445	-1.03239579513748	0.0897054575822707	0.397985162063747
Merged-chr5-101932173-3	chr5	101931679	101932679	+	900.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	B3A|SINE|B2	137742.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.58923534355899	2.65055649997526	2.84391806889322	2.70205856591649	2.57120996897613	2.7983651634995	-0.0267800492674281	0.97163033096666	0.993783614343214
Merged-chr11-76495459-4	chr11	76494917	76495917	+	938.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-922.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.09030893320266	6.96604090591463	7.01143843146241	6.8417829190723	7.02251881122542	6.85864006006461	-0.165525560890509	0.499154685029866	0.834298784414566
Merged-chr7-18910564-4	chr7	18910049	18911049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033314)	promoter-TSS (NM_001033314)	-145.0	NM_001033314	232933.0	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	4.35997299684476	4.31488891304264	4.59106676935083	4.46591783418746	4.50987916199578	4.22359301453387	-0.0106659719060917	0.981148076469216	0.995687678606673
Merged-chr11-118356396-3	chr11	118355895	118356895	+	838.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	-984.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	3.18357477148648	3.27304294036826	3.43929083374615	3.30127173280717	3.15322681788917	3.40358950986147	-0.0551947390305137	0.92940073368412	0.984100584711557
Merged-chr1-119498893-5	chr1	119498402	119499402	+	916.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	5880.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	5.38241567933904	5.32434734275772	5.99200563922427	5.8855507823065	5.30626755744994	5.46066252091651	-0.0325224980678629	0.934794842723003	0.985727536128156
Merged-chr3-109342228-3	chr3	109341709	109342709	+	850.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1526.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.19974636283068	5.32234487885048	5.23242138522438	4.84880682845208	4.76644130838491	4.80147548523182	-0.966327419167817	0.00890087461386759	0.0928216536997988
Merged-chr1-167336602-4	chr1	167336093	167337093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13398.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	6.65195308421858	6.63942489441615	6.62402205882929	6.46243786128683	6.73453760867407	6.9481223522307	0.134923316630218	0.620729580209931	0.890308839459615
Merged-chr17-13146463-3	chr17	13145970	13146970	+	886.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-14679.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	3.71030154859958	3.40080308204467	3.38682967495156	3.46199306740981	3.46728829657605	3.62362287512918	0.00892802720252762	0.987957042653595	0.997268471577753
Merged-chr3-104788825-4	chr3	104788355	104789355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291859)	promoter-TSS (NM_001291859)	-179.0	NM_007484	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	6.87804297848119	6.40637448234102	6.42281469357226	6.48023799603055	6.30912206116923	5.86788003527942	-0.551042989048718	0.0918752324568517	0.403736696185356
Merged-chr8-10596463-4	chr8	10595930	10596930	+	954.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001319151, intron 33 of 34)	intron (NM_001319151, intron 33 of 34)	286024.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	2.84735491742273	2.53833985632826	2.84690902874003	2.93170072564293	2.56627946337474	2.86000399760891	0.217757099708024	0.779568132522803	0.945834927617815
Merged-chr9-99517653-4	chr9	99517124	99518124	+	852.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001166138)	TTS (NM_001166138)	47203.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.89793010965731	5.16799395580539	5.05390168800676	5.25664710377579	5.27771548954624	5.01074118572588	0.31203793435287	0.400687763873417	0.776924744715187
Merged-chr12-76676541-3	chr12	76676054	76677054	+	956.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 1 of 35)	intron (NM_013675, intron 1 of 35)	33993.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	3.20549523177538	3.06538230134083	3.25620116631168	3.14559374533256	3.1807776359947	3.32702601470374	0.175823250864263	0.781230810670178	0.946170805022375
Merged-chr12-119157249-4	chr12	119156751	119157751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81025.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	6.06193268966939	6.20838277192394	5.59396537908245	6.41529394875876	6.55801649128208	6.04557188795183	0.623263965824357	0.0657030482949443	0.334415172652662
Merged-chr6-122934536-3	chr6	122934046	122935046	+	580.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199311)	TTS (NM_199311)	12698.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	6.17560957811397	5.91244331481978	6.34615965687672	6.6510578479164	6.58939642281943	6.38704477560602	0.668240606986925	0.0215272080053731	0.169613359714543
Merged-chr5-130718589-3	chr5	130718096	130719096	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	269804.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	2.8598331306371	3.17235487921406	2.89317200745959	2.61089420136223	2.61374514061949	2.78054396007713	-1.7245262319753	0.0252279313085301	0.188046735494059
Merged-chr6-124733803-2	chr6	124733303	124734303	+	792.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-649.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	6.53428857266648	6.49744152102869	6.3861238274152	6.54638745281925	6.65308645578234	6.28455009739099	0.0598878269304899	0.827929097424304	0.959584381371691
Merged-chr13-107023025-3	chr13	107022532	107023532	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	462.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	5.56397322893215	5.86072195141278	5.73046566511559	5.44892696092407	5.60306101484486	5.76683062494591	-0.218275523005043	0.505867742313595	0.838177729332582
Merged-chr3-59248136-4	chr3	59247655	59248655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 24 of 43)	intron (NM_177855, intron 24 of 43)	14830.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	4.42032156335459	4.73034922952752	4.85990521305363	4.19703768714245	4.41048479993643	4.71296410551482	-0.557251106878672	0.228099198865435	0.623077992788366
Merged-chr11-75131507-1	chr11	75131007	75132007	+	570.0	f0_balb.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	36645.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.48422550907654	3.93747103022545	3.7512687008522	3.32911431344797	3.12970706791957	3.39518736723977	-1.74559320478709	0.00562091936944451	0.0665843247915672
Merged-chr3-79179751-3	chr3	79179289	79180289	+	940.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAA)n|Simple_repeat|Simple_repeat	-33130.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.07479057163902	5.79234926042191	6.15155584013078	7.09681814611606	7.08416293790016	6.68704191125752	1.56540866785622	6.27333696819909e-08	4.69813819753622e-06
Merged-chr11-79120299-4	chr11	79119796	79120796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	26177.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.95521725478406	4.44891705992171	4.13389372167102	4.72939608571669	4.39085785555749	4.62964883350373	0.049022509833647	0.922371859997399	0.982542868764899
Merged-chr9-83553038-2	chr9	83552538	83553538	+	802.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	4700.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.39353778951528	3.38685817742881	3.58355732047026	3.39332488106999	3.29075588233986	3.44441937225472	-0.305167553090375	0.606490903673802	0.884136163326996
Merged-chr11-78465778-4	chr11	78465347	78466347	+	834.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026740, exon 1 of 5)	exon (NM_026740, exon 1 of 5)	146.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	5.34136648803313	5.50901507438308	5.70541956261757	5.33401557456942	5.3432128613752	5.56051092352556	-0.210067091843111	0.540580231386876	0.856401971110652
Merged-chr8-117126096-2	chr8	117125596	117126596	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	B1_Mur4|SINE|Alu	30231.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	3.17210516642349	3.21735941646029	3.55198072448756	3.3185058993181	3.39254011420192	3.5710404374494	0.431824548272296	0.488000159038095	0.828836260399703
Merged-chr1-34464781-4	chr1	34464283	34465283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	L1MB8|LINE|L1	5037.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	7.76035119671161	7.27632159185923	7.59993306631389	7.72193002017806	8.00046331576882	7.88804400607057	0.456112792471782	0.0689115976779424	0.343528501250326
Merged-chr5-64341127-4	chr5	64340620	64341620	+	837.345825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	MLT2B3|LTR|ERVL	110763.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.26493849910088	5.17329549386243	5.662357532947	5.78067741012995	6.0025944582047	6.20694323506905	1.16714686100802	0.000764831489120688	0.0146636171766715
Merged-chr11-48814607-2	chr11	48814107	48815107	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145377, intron 1 of 5)	B1_Mur2|SINE|Alu	2784.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	6.3868265290412	6.31904404645406	6.11869003296122	6.35839881099526	6.67857124301909	6.20222465191725	0.254651049274835	0.392622812761619	0.771214636708298
Merged-chr11-95413883-4	chr11	95413382	95414382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025287)	promoter-TSS (NM_025287)	-201.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	7.48111931823821	6.73959683759389	7.05312338220041	7.36076630056233	7.27659319009416	7.21229532007943	0.228228569763896	0.430979530998008	0.796623566289661
Merged-chr14-25459635-3	chr14	25459151	25460151	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	CpG	466.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.81030782892248	7.91858114014831	7.65903131652307	7.5296679918741	7.47419353570582	7.42675843236209	-0.473449066412555	0.0349087630407504	0.229130579403231
Merged-chr13-100594290-3	chr13	100593818	100594818	+	918.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22626.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	3.62585614121703	3.47844318290617	3.8244488129214	4.51926202216336	5.68588786120565	5.49901138094846	5.07896568718233	5.90039113285978e-13	1.18303553104337e-10
Merged-chr17-5664332-2	chr17	5663823	5664823	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	B4A|SINE|B4	-134334.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	2.24826336655667	2.34093316387612	2.60345398401	2.52397925990258	2.39648815318179	2.73641998599496	0.93188075598542	0.271581774580468	1
Merged-chr19-3851037-3	chr19	3850553	3851553	+	866.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-720.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	6.46341156289711	6.41142448328595	5.88226413987063	6.39297503724849	6.39674289552033	5.65263397572874	-0.137116777810357	0.707396318541585	0.923368256411511
Merged-chr17-34879686-4	chr17	34879191	34880191	+	926.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013484, intron 3 of 17)	intron (NM_013484, intron 3 of 17)	2409.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	5.16258316879557	4.8614995952021	4.87898241857505	5.34437516355584	5.19683663059768	4.94580531300478	0.417839170004657	0.279611203492102	0.677308794244801
Merged-chr11-20477690-4	chr11	20477199	20478199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65554.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.11834707492077	5.3082251949192	5.79746301174485	5.66263673773206	5.33074095841759	5.55948934876363	0.179625107263009	0.636931633494238	0.897256731014262
Merged-chr2-122765335-4	chr2	122764810	122765810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162503)	promoter-TSS (NM_001162503)	-49.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	7.09543289826417	7.27318518155668	7.0513157192737	7.15110255718534	7.37089917187672	7.14811012574803	0.128281841381358	0.599502140527647	0.88105150498118
Merged-chr8-84665062-4	chr8	84664586	84665586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	6.8087918284277	6.65716159285454	6.73514111661224	6.64182059962396	7.09687510012371	6.83950940608704	0.227173686035995	0.40091110974495	0.777055942689443
Merged-chr5-30906551-1	chr5	30906051	30907051	+	819.0	f1_balb.idr	TTS (NM_024460)	TTS (NM_024460)	1237.0	NM_001134692	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	3.45706686245328	3.39370383876375	3.61230675992025	3.10780389174734	3.52348996156988	3.24536006211901	-0.662263330712577	0.305154890418677	0.701440130713669
Merged-chr2-22749995-4	chr2	22749512	22750512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24315.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.81460445047619	5.691209553439	5.67920970258436	5.51370115950438	5.57040745971658	6.02377105374533	-0.0400223122050131	0.905306409388539	0.978279198518346
Merged-chr5-124050240-4	chr5	124049738	124050738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17978.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.83035588922001	7.97023296423014	8.02291067021597	8.00800407513126	8.16926720271899	7.9290838418739	0.146842480376335	0.502396211502461	0.836485922295083
Merged-chr10-63384990-2	chr10	63384490	63385490	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	-1573.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	2.5048828522856	2.50705700019354	2.61070696282677	2.65374146801649	2.65928661377542	2.86519457267622	1.0563796211877	0.167408180351762	1
Merged-chr8-71307501-1	chr8	71307001	71308001	+	545.5	f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	MTD|LTR|ERVL-MaLR	34787.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	5.68485908567336	5.78102195098596	5.97737850068637	5.7924038992845	5.74021585830897	5.49399273431561	-0.220195489160327	0.493947508850593	0.831755865067393
Merged-chr1-153803711-4	chr1	153803200	153804200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40441.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	7.53670199075353	7.31281271441104	6.77695231364371	6.99043188889126	6.72462038334377	6.59233256939457	-0.719196655196433	0.0177639301490145	0.149318224046793
Merged-chr2-91959054-3	chr2	91958510	91959510	+	836.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	4553.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	3.95237340465754	3.73291258894487	4.18351066533693	3.85814769186934	3.38606333804722	4.03417433754152	-0.566066949789089	0.342578697582326	0.731471837188352
Merged-chr5-73647581-4	chr5	73647107	73648107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011890, intron 1 of 5)	CpG	124.0	NM_011890	24051.0	Mm.89310	NM_011890	ENSMUSG00000029156	Sgcb	43kDa|AI747103|AI844814|beta-SG	sarcoglycan, beta (dystrophin-associated glycoprotein)	protein-coding	3.89547958717962	3.85226486981487	3.81138848323605	4.36675501809013	4.24556249722791	4.32043918158003	1.31894244131646	0.00678886605224356	0.0764254789681547
Merged-chr2-34790467-4	chr2	34789951	34790951	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145522, intron 4 of 7)	ORR1A2|LTR|ERVL-MaLR	9461.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	3.40590545427162	3.80672730003589	3.36428514916195	3.49725468351579	3.65679069376233	3.60785104516623	0.139812147309539	0.816945937781211	0.956754861188725
Merged-chr16-90045209-2	chr16	90044709	90045709	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70510.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.47071827987942	3.6834193081366	3.58817008204691	3.4034558766218	3.20935332498373	3.55352190653706	-0.737731231268815	0.219133035283958	0.613224645184221
Merged-chr10-43829158-1	chr10	43828658	43829658	+	661.0	f0_balb.idr	intron (NR_131055, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	3251.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	4.25894980108074	4.41082050842741	4.44642647004888	3.23245697473013	3.17502308283236	3.50804716752229	-4.48445171505454	9.52247814557856e-09	8.66899739099892e-07
Merged-chr19-28677209-4	chr19	28676743	28677743	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-981.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	5.02475773672559	4.53984334392701	4.75274746511851	4.22610336317407	3.86109870406332	4.1785884810314	-1.83564501335203	0.000158417619320807	0.00414884018212322
Merged-chr14-17982124-2	chr14	17981557	17982557	+	798.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009380, exon 1 of 7)	exon (NM_009380, exon 1 of 7)	413.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.00001883955195	3.16432092720704	3.29708289339865	3.13179316461776	3.16787855759859	3.31346266727438	0.207029870900764	0.748205341427429	0.936880860325556
Merged-chr11-116533105-4	chr11	116532632	116533632	+	745.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025367)	promoter-TSS (NM_025367)	-106.0	NM_025367	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	2.42474580704491	2.22508574304769	2.43376257356802	2.21620053205466	2.15684499956174	2.24934983038692	-1.09656816646722	0.208947192365151	1
Merged-chr5-64038715-4	chr5	64038207	64039207	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6266.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	4.22385694911353	3.8502218961691	4.07274217297376	5.01539191284634	5.0168685521207	5.24010825123735	2.59368501520658	3.57295442783973e-08	2.87244823219022e-06
Merged-chr10-75837489-4	chr10	75836983	75837983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2602.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	7.69886483791997	7.60468538056461	7.39535446269314	7.65618025552569	7.78389882394451	7.35023387776755	0.0586700593985873	0.813210424254228	0.955933854959943
Merged-chr5-72844543-3	chr5	72844040	72845040	+	975.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	L1MB5|LINE|L1	23908.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	3.20952368675953	3.2621616006296	3.39812201442726	3.37671473132915	3.14365092262188	3.06201153409489	-0.350796991161412	0.585065219895474	0.874806498177193
Merged-chr3-84679075-4	chr3	84678581	84679581	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	12889.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.22275562741853	3.08497812600741	3.2629862831028	3.04924391437272	2.8899337511851	2.92264948418498	-1.07804733892067	0.110906989040009	0.444841551070303
Merged-chr13-21941082-4	chr13	21940582	21941582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4012.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	4.92838671931661	5.12820117500792	5.00815646813867	5.02430032192684	5.29378140764521	4.80435994001203	0.0983734743298202	0.802215961434672	0.953179859597221
Merged-chr11-85186974-3	chr11	85186473	85187473	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	15877.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	3.6979485961802	3.60760697275294	3.95150803520638	3.92644975574618	4.0611177747242	4.19915626907153	0.974284621646366	0.0636420511096477	0.328767639677588
Merged-chr17-57347941-4	chr17	57347444	57348444	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10742.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	7.28247542514846	7.30168905292009	6.96018156931095	7.13829693778302	7.46239097625508	7.2649482326919	0.150825459105114	0.55470281977549	0.86290101194412
Merged-chr1-180973888-4	chr1	180973380	180974380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 22 of 22)	(CAGA)n|Simple_repeat|Simple_repeat	31362.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.87982138814901	5.87678859484253	6.18614339972226	5.9896050610707	6.01125584289694	6.18622927344861	0.141922256974659	0.63763919295754	0.89735407749672
Merged-chr4-53714159-4	chr4	53713629	53714629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139309)	promoter-TSS (NM_139309)	-53.0	NM_139309	246179.0	Mm.247210	NM_139309	ENSMUSG00000028414	Fktn	D830030O17Rik|Fcmd	fukutin	protein-coding	4.99507156018009	4.93217228850064	4.71189245576383	4.97246573442635	4.53683669500639	4.968014661522	-0.135363823387286	0.745400763913076	0.936169170413447
Merged-chr6-38352686-4	chr6	38352239	38353239	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	1864.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	6.60414322371476	6.7030784545505	6.11990286870297	6.97728944595361	6.79709156441019	6.86685100927746	0.574416121388547	0.048458056195888	0.279269839309285
Merged-chr9-64960452-2	chr9	64959952	64960952	+	629.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	-380.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	5.01222827489907	4.80992254670345	5.27211716638793	5.01301060374993	5.15165114455524	5.33474487924985	0.282163993200999	0.464699315183612	0.816459397744841
Merged-chr6-137685515-3	chr6	137685019	137686019	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36234.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	2.66106599510179	2.64266028946597	2.68235679416315	2.45985222369184	2.42129804693811	2.56873198985012	-1.08943887918157	0.165535145740143	1
Merged-chr13-41017951-2	chr13	41017451	41018451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 2 of 4)	intron (NM_001360770, intron 2 of 4)	1701.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	5.02822394720533	4.92502464564539	5.01071575800333	4.96375741136765	5.44752363197037	5.21123001070508	0.50995410514173	0.180579402135604	0.562547768360139
Merged-chr7-81211910-1	chr7	81211410	81212410	+	543.0	f0_balb.idr	Intergenic	Intergenic	-1894.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	5.43246272317016	5.35197538928937	5.51614781605975	4.90598790575206	5.23293379041567	5.31993565040485	-0.536308197274874	0.137202151992014	0.495005708838896
Merged-chr4-133574784-4	chr4	133574315	133575315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172876)	promoter-TSS (NM_172876)	70.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	7.86231843061153	7.92939319743001	7.48732482473474	7.21499787859391	7.32831891897063	7.26569814100684	-0.744873513853367	0.00226499463596136	0.0339700204882972
Merged-chr10-34206016-3	chr10	34205494	34206494	+	701.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	B3A|SINE|B2	1557.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.26049626762754	6.22675904128333	6.23177896151152	6.35050553174215	6.55461546300337	6.50079353268966	0.383393657207474	0.156617946659036	0.527456433626302
Merged-chr10-8874818-4	chr10	8874305	8875305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11265.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.7400310809919	8.47141138720437	8.28827252581612	8.41684286142606	8.4315276694996	8.09869512086949	-0.262346206696899	0.270958238753752	0.668165045497502
Merged-chr17-27977395-3	chr17	27976953	27977953	+	969.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286041, intron 3 of 23)	intron (NM_001286041, intron 3 of 23)	68147.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.85352181270313	4.62633827735646	4.38726790696559	3.45415310125991	3.28086939442611	3.87372400390093	-3.84634050624708	1.03359796454077e-08	9.33806942817682e-07
Merged-chr9-45893928-4	chr9	45893425	45894425	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178709, intron 5 of 13)	MTC|LTR|ERVL-MaLR	12257.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	5.25765814864999	5.44120783376626	5.928962055111	5.41842649679772	5.3949400171549	5.64038919078806	-0.148236713451308	0.689779437325766	0.917488557497671
Merged-chr11-69092506-4	chr11	69092004	69093004	+	796.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009497)	TTS (NM_009497)	3976.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	4.41125012407961	4.1326053127004	4.44375279004721	4.60820568485412	4.41919012974179	4.55182971744686	0.497425737899502	0.265937809337168	0.66375167194574
Merged-chr5-129954405-2	chr5	129953905	129954905	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	12296.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	3.1305046594354	3.01616631850385	3.43649896005621	3.10957704360336	2.74319162945443	3.13208709032548	-0.876968157624182	0.224625218337865	0.61953048385618
Merged-chr12-85746443-4	chr12	85745925	85746925	+	901.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-114.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	4.42082856512075	3.88532335930376	3.95317606772933	4.15900417346037	3.57744342082041	3.86897987326418	-0.69402976126526	0.234928351548533	0.631024470284135
Merged-chr1-60343365-4	chr1	60342905	60343905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030013, exon 1 of 13)	exon (NM_030013, exon 1 of 13)	105.0	NM_001313721	77951.0	Mm.197640	NM_030013	ENSMUSG00000049439	Cyp20a1	A930011N14Rik|Cypm	cytochrome P450, family 20, subfamily a, polypeptide 1	protein-coding	6.47746239023171	6.64194245263701	6.37678149751498	6.56548849865934	6.59956302146612	6.37775163319683	0.0234396364194483	0.931182990635291	0.98479720232824
Merged-chr19-53303562-4	chr19	53303070	53304070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-6936.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.06972344875276	5.8601883627806	6.22401245411777	5.77827718162025	5.73358317459563	5.94821070735789	-0.41461061713731	0.179881894517147	0.561356228230283
Merged-chr15-58986638-3	chr15	58986137	58987137	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52827.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.83322429829823	4.5826102491337	3.85173881706718	4.01219780723258	3.61599488023243	3.98407284009947	-1.7030886796154	0.00372335121150086	0.0493430136144501
Merged-chr11-103418248-3	chr11	103417755	103418755	+	744.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5591.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	5.69540778007667	5.24099977736874	5.66514528552867	6.39523876124262	6.1876169958084	5.61294455717748	1.00919648474485	0.00632321732107651	0.0726114086188427
Merged-chr14-65357453-1	chr14	65356953	65357953	+	569.0	f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.24944167098098	5.79894727711835	5.50881047060981	5.75681453234603	5.59331009520069	5.68301435764164	0.246564458519099	0.48107598291993	0.824933692849553
Merged-chr2-132463610-4	chr2	132463104	132464104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27124.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	3.95701581098424	3.90592017829875	3.90131564619348	3.97246085067681	4.14654743368526	3.9711360834891	0.348907547424449	0.481842738289172	0.825208669475694
Merged-chr1-89569224-4	chr1	89568726	89569726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	114415.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	6.31064909613664	6.3381399657921	6.39760530938287	5.26871586802506	5.28042284867232	5.74338820692598	-1.63902107326881	3.68491137050461e-07	2.25617443205995e-05
Merged-chr16-4683305-2	chr16	4682805	4683805	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-765.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	7.09244582731466	7.13127682735099	7.07615488627767	7.36174354919365	7.85805980717261	7.2112690913812	0.621175297634128	0.0232731421532989	0.178562619851701
Merged-chr2-165948992-2	chr2	165948512	165949512	+	765.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43625.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.82721354938093	5.52405731547989	5.74159406385105	5.73760051026732	6.00870923978197	6.22337844394748	0.528917290272254	0.106444489448561	0.435598931689167
Merged-chr17-55959327-7	chr17	55958893	55959893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	8.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	8.13633808439698	8.11812539759043	7.79257026631726	8.04138231242753	8.1262723437153	7.60390133966271	-0.111000317626608	0.662761627521903	0.906804932599005
Merged-chr12-54981772-2	chr12	54981272	54982272	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	4564.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.19496802013749	5.05818604329932	4.94409442767099	5.52397863866634	5.46980653480256	5.2949298809995	0.725381261759951	0.0412217160707713	0.253512865335231
Merged-chr18-38420276-4	chr18	38419777	38420777	+	955.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	1370.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	7.11706249934813	7.17526363072557	6.94448253832102	7.14898479301442	7.34387450938876	7.18781419778854	0.217632590221987	0.368736206397305	0.753594740654151
Merged-chr15-63953478-1	chr15	63952978	63953978	+	601.0	f0_balb.idr	intron (NM_001360038, intron 3 of 11)	intron (NM_001360038, intron 3 of 11)	39017.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	3.69710335144715	3.65024450722255	3.69233375062643	3.46287959627457	3.52344511190277	3.71096289346823	-0.404272850956301	0.466843038218371	0.817656036143015
Merged-chr17-26439017-3	chr17	26438541	26439541	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081656, exon 3 of 5)	exon (NM_001081656, exon 3 of 5)	24076.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	3.57850169928941	3.01375456450824	3.60590596471743	3.47037627811078	3.02551237493498	3.18035355061862	-0.722084141308058	0.308028428963224	0.70399988465522
Merged-chr5-72235181-3	chr5	72234669	72235669	+	924.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	31826.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.65731162914694	3.53764009536713	3.78408161517434	3.65911606932327	3.38480519256802	4.03499801628113	0.173699182222423	0.771405440437936	0.943614978016208
Merged-chr2-25621403-4	chr2	25620902	25621902	+	974.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109993, exon 2 of 4)	exon (NM_001109993, exon 2 of 4)	600.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	8.07693480855618	8.46463780246226	8.19929684865652	8.01076696817563	8.33629459041606	8.0775342260349	-0.148907495843072	0.530081185536314	0.851070276054813
Merged-chr11-60454656-4	chr11	60454179	60455179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021354)	promoter-TSS (NM_021354)	88.0	NM_021354	13495.0	Mm.41803	NM_021354	ENSMUSG00000020537	Drg2	AI255295|AI461605|DRG-2	developmentally regulated GTP binding protein 2	protein-coding	6.22706616966483	6.4505306420807	6.56093557894591	6.52329684898066	6.57515250084524	6.53498964289335	0.214447510432659	0.429528287256328	0.795784671795164
Merged-chr6-113076684-7	chr6	113076151	113077151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028385)	promoter-TSS (NM_028385)	593.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	7.67896604921859	7.58121662399107	7.68123716684285	7.70731311516634	7.84805244889259	7.56862344642285	0.106009155380033	0.637598182178941	0.89735407749672
Merged-chr15-76949586-2	chr15	76949086	76950086	+	788.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_054099, exon 3 of 4)	exon (NM_054099, exon 3 of 4)	1325.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	3.54698127573906	3.5960079013951	3.60484904534373	3.95324130483962	3.93507144244133	3.67693629129715	0.954011745414169	0.079240920514363	0.37212142211415
Merged-chr9-35061779-2	chr9	35061299	35062299	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MLT1A0-int|LTR|ERVL-MaLR	-54929.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.25926687444824	5.16205144944763	5.12142818524184	5.17400515529847	5.02808084348168	5.6452104971035	0.223278191231574	0.562978328239905	0.865755360453189
Merged-chr11-44415017-5	chr11	44414470	44415470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001303244)	TTS (NM_001303244)	14907.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	7.94685622658474	8.22437357922735	7.87446304040436	8.07935398135869	8.38234289377861	7.91425158424132	0.167830835579703	0.497110189025434	0.833442633454308
Merged-chr15-55191902-1	chr15	55191402	55192402	+	549.0	f0_balb.idr	intron (NM_001037937, intron 4 of 8)	L1PB4|LINE|L1	58466.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	3.05390712418212	3.11057795790923	3.34311987052277	3.26997601487299	3.48569510965678	3.57060153564583	1.12637206752242	0.0759482050205806	0.362689293121698
Merged-chr13-24794000-2	chr13	24793500	24794500	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-7657.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	3.74974813669434	3.73904955155003	3.61846331661104	3.25208952554308	3.35847489651031	3.8371810225892	-0.724689340616152	0.240345546285557	0.637428195809545
Merged-chr17-84365518-4	chr17	84365032	84366032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	100676.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.09388409980972	4.75822211501893	5.06757594346618	4.93808606100011	5.13354916416225	4.76043171301388	-0.0277373979054155	0.944778890049228	0.98786315338489
Merged-chr6-50160053-1	chr6	50159553	50160553	+	640.0	f0_balb.idr	intron (NM_001361248, intron 4 of 13)	intron (NM_001361248, intron 4 of 13)	49193.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	3.23044154163223	3.20138030727557	3.28405775111898	3.07898729106361	3.02705721792812	3.56112803126539	-0.00322325630017734	0.99615090308348	0.998961028701257
Merged-chr5-53401261-4	chr5	53400748	53401748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134142.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	4.06605343796688	3.71036009363596	3.70623816922788	3.69559706805206	3.58250538020308	3.9284166889161	-0.350932355475754	0.530101463516918	0.851070276054813
Merged-chr11-70846629-1	chr11	70846129	70847129	+	689.0	f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	1868.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	4.47049839839299	5.0374333633558	4.57106623488963	4.85261383414698	4.95870569162141	4.68228474222868	0.258348260486651	0.558420440892626	0.864672466604129
Merged-chr8-41043737-4	chr8	41043219	41044219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-1788.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.93300138109476	4.84609074921863	4.45712492371206	4.98804492838312	5.01004229682898	5.05309182563328	0.528775688138192	0.19555366042531	0.583296134810338
Merged-chr5-102061392-4	chr5	102060885	102061885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	8536.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.86108052513478	6.99235193957737	6.99339429404661	7.18365583731361	7.44880830581647	6.87863202315128	0.385802588423772	0.151066440179354	0.518347890904894
Merged-chr6-119473887-2	chr6	119473387	119474387	+	791.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MT2A|LTR|ERVL	-5781.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	3.74256034103391	3.77416973543732	3.80490370987351	3.77608015140778	3.77161782306479	4.19380356507022	0.459412445408029	0.391800532630914	0.77074421294513
Merged-chr1-135734325-4	chr1	135733825	135734825	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	5158.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.71870482200731	4.51038492888026	4.55034992065038	5.07234777175847	4.9254499668626	5.04049463837736	0.93458711517272	0.0187334860350188	0.154870929558057
Merged-chr2-157108414-4	chr2	157107921	157108921	+	892.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 11 of 16)	BGLII_A|LTR|ERVK	21366.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	3.57748686858725	3.75512652518319	3.57462654090179	3.80247311875386	3.46830060086044	3.90060106289731	0.292330502109476	0.609830251288585	0.885315715493415
Merged-chr16-44136524-8	chr16	44135994	44136994	+	871.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	2765.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	6.14800756510445	6.01030592960576	6.04672319224952	6.05008451602749	6.23497194418445	6.29475160155307	0.211756873291634	0.460486671732405	0.814520074002194
Merged-chr7-118468301-3	chr7	118467786	118468786	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20064.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	2.37367441034031	2.44530802490726	2.59238033559327	3.16650677002006	2.69180809572124	3.47420414691966	4.25922875589014	6.54927233881406e-05	0.0019793522271255
Merged-chr16-92433646-4	chr16	92433099	92434099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	32570.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.46035758373131	6.61689900817981	6.79055166627362	6.35896293157768	6.60014548176914	6.55196588805455	-0.181338989387634	0.507860736675538	0.839513705470194
Merged-chr10-117900365-2	chr10	117899865	117900865	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25094.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	7.92239889145645	7.64613100396601	7.75437646063965	7.95831440550641	8.21614388123414	7.60557003271444	0.257568745916267	0.317406763596315	0.711302795223616
Merged-chr8-88650258-6	chr8	88649664	88650664	+	885.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	2817.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	5.51324456629803	5.42092872354225	5.80363354086451	5.48060361486346	5.18412657670658	5.72171371154131	-0.214923051172542	0.553367991328739	0.862251545920931
Merged-chr6-71272029-2	chr6	71271529	71272529	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145568)	promoter-TSS (NM_145568)	10.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	8.37122456099003	8.76098331194182	8.27390489615346	8.46320232325638	8.53553284484334	8.25170741258723	-0.091686207528583	0.702336163040027	0.921882689522882
Merged-chr2-28841857-3	chr2	28841363	28842363	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033294, intron 1 of 19)	intron (NM_001033294, intron 1 of 19)	1457.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	4.35610558855225	4.29309990841133	4.55988787307012	4.48019232270408	4.41772268675771	4.77398138843857	0.393768446387798	0.375640889312065	0.758867268952724
Merged-chr19-12473473-4	chr19	12472947	12473947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	12668.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.91728095982831	6.00524390353601	6.16163683581922	5.92450573460262	5.99967157377896	6.05270015977103	-0.0575736631456601	0.844411532025038	0.96373428957366
Merged-chr3-153572641-2	chr3	153572141	153573141	+	613.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	152492.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	5.61101205378307	5.64774656175011	5.58148124755161	5.47956288189116	6.17499276854009	5.61598988396066	0.355796409928833	0.324581814703534	0.717544999689449
Merged-chr19-53900174-4	chr19	53899703	53900703	+	873.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-3148.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.28172779183943	4.44211060743306	4.18841693784814	4.33414031976094	4.11615637898549	4.11100654574819	-0.333879112471132	0.476515452973209	0.82257619929543
Merged-chr15-27469374-4	chr15	27468864	27469864	+	917.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	2687.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	2.70230449892522	2.44889280399454	2.63002059706539	2.29381055647507	2.18122560999042	2.3854580114119	-2.20200061041769	0.0156332421352216	1
Merged-chr1-189707284-4	chr1	189706786	189707786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19200.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.7944212163726	3.82241638439804	4.16163068966538	3.5958758462033	3.66501742530282	4.26820959472856	-0.182948753183424	0.754426528072672	0.938902535386539
Merged-chr5-124033309-2	chr5	124032809	124033809	+	646.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.31872861643913	4.02780105714215	4.06489286678346	4.36548847217546	4.33406829787891	4.13508593877167	0.382005030218643	0.424286586581815	0.792605206832318
Merged-chr17-5570429-4	chr17	5569946	5570946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77846.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.57381819511504	8.73587291182907	8.13690458820227	8.349694366455	8.68663889593357	8.08988487477579	-0.147541799448614	0.58711252353446	0.875769926947203
Merged-chr11-117308094-4	chr11	117307599	117308599	+	920.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-23616.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.76769299870509	4.42383284374132	4.59213784625974	4.52984049609669	4.29784362532818	4.21126550043391	-0.619612912551412	0.171130477394832	0.549063960941974
Merged-chr10-42271582-4	chr10	42271075	42272075	+	892.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5167.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	6.6057222543161	6.60789603297175	6.45380636444105	6.86998092187812	7.04079326718148	6.8772612480516	0.582726871198807	0.0221243359250788	0.172678148734073
Merged-chr1-88705966-4	chr1	88705466	88706466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3775.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.62371594913182	4.64615823281006	4.51044768511656	4.54996808049259	4.62736750091974	4.61930032139036	3.18963342386366e-05	0.999938239169753	0.999986582743456
Merged-chr1-86021760-2	chr1	86021235	86022235	+	652.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001122732)	promoter-TSS (NM_001122732)	-207.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	2.98675549368152	2.84776452470102	2.9040390177467	2.87504301581817	2.73699126725621	3.09280687173036	-0.0568574427258027	0.936244863937509	0.986037792257163
Merged-chr13-3725970-4	chr13	3725568	3726568	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78250.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	2.99800946931656	2.83080995318024	2.82383349822174	2.53556216222283	2.33252541224696	2.89747833874857	-1.52968781718135	0.0902953146515159	0.399536960463884
Merged-chr8-120129007-2	chr8	120128507	120129507	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	B3A|SINE|B2	14855.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	2.23251167760472	2.19914333971216	2.41165674099056	2.13555369741107	2.12868385103428	2.42357971322821	-0.337914104173235	0.701799036999437	1
Merged-chr7-111028876-4	chr7	111028408	111029408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009431)	promoter-TSS (NM_009431)	-43.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	6.92222010227874	7.32432802306444	7.22539427270818	7.12998405407621	7.22681819410984	7.2942153933249	0.0733729968565556	0.771508181830751	0.943614978016208
Merged-chr10-39442714-2	chr10	39442214	39443214	+	578.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	72915.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.7309709396526	5.51056004996567	5.81844567573261	5.90950937620684	5.74561006360477	5.15082958121165	-0.0645185942087752	0.862910182522329	0.968145160359081
Merged-chr4-126682340-2	chr4	126681840	126682840	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	intron (NM_011970, intron 1 of 5)	4697.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	5.45730511070706	5.69707417834051	5.83499265567971	5.8903811383097	5.98143576696645	6.09740332099257	0.581818754328599	0.0650185116737332	0.332517536530301
Merged-chr11-20149791-4	chr11	20149295	20150295	+	732.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-36844.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.34748550561094	4.36979933300508	4.78475525424625	4.4295356795276	4.66517109438873	4.66667342805505	0.217658749676329	0.626016526004506	0.892770422921587
Merged-chr6-128648751-4	chr6	128648302	128649302	+	966.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13583.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	4.26928084948489	4.42515952590474	4.58901176367315	4.11115425471905	4.17942533418544	4.19437753932618	-0.713361170648584	0.122479190426267	0.468175692621683
Merged-chr1-91231975-4	chr1	91231473	91232473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18331.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.60385167787101	3.69350050459351	3.42749027992099	3.71593387317395	3.36745490768882	3.55702183830986	-0.119709646815837	0.838818638784756	0.962600229831317
Merged-chr2-51147948-6	chr2	51147449	51148449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 2 of 4)	CpG	1162.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	4.41942916789333	4.37125032562428	4.47672453721097	4.45003947564907	4.24579352764278	4.90755845946823	0.32496793835855	0.489539115078741	0.829739482756292
Merged-chr7-28866055-4	chr7	28865510	28866510	+	928.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008496, intron 3 of 3)	intron (NM_008496, intron 3 of 3)	1624.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	3.15856155378029	3.39131411927822	3.35758393147301	3.38774039069384	3.10419678695891	3.13885316062452	-0.365008639958979	0.569462858967462	0.8688875602138
Merged-chr13-74209164-2	chr13	74208664	74209664	+	594.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	-464.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	5.78205139761477	6.0520504313038	6.19353717832562	5.62077214956921	5.54415342665465	6.00912305396665	-0.509608732317559	0.127503060119842	0.477271790294292
Merged-chr12-24534324-4	chr12	24533820	24534820	+	804.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020614, intron 8 of 14)	intron (NM_020614, intron 8 of 14)	35739.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	5.08780347186901	5.14682617667056	5.53242392829572	5.38034414286775	5.76506398872778	5.95218213069949	0.875422534356631	0.0183941623345232	0.152962368531982
Merged-chr5-130248906-2	chr5	130248406	130249406	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 3 of 4)	intron (NM_023248, intron 3 of 4)	6624.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	3.99906987454276	3.96868581116061	4.34552146543516	4.20378155047534	3.93576641997307	3.80000831285975	-0.328105712933025	0.530545296742738	0.851204116136432
Merged-chr2-4620314-1	chr2	4619814	4620814	+	671.0	f0_c57.idr	Intergenic	Intergenic	31821.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	2.65791995188057	2.34093564410643	2.65136662298697	2.67617827014747	2.58640450654834	2.72502127322333	0.591846390552771	0.461372566870895	1
Merged-chr8-106338082-4	chr8	106337596	106338596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021491)	promoter-TSS (NM_021491)	-108.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	5.32326875430359	5.51980329968808	5.47364892276516	5.65516813787908	5.95846830927864	5.59520560117109	0.592277272733179	0.076456671472131	0.364197774207298
Merged-chr5-96898366-4	chr5	96897860	96898860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22912.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.83076639326542	4.60194883690071	4.78792910881172	4.58927598386247	4.54971257123263	4.62037565915071	-0.374061530724492	0.36094624924112	0.746938274913623
Merged-chr15-27673984-2	chr15	27673484	27674484	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	RMER17C|LTR|ERVK	7558.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.3549287675792	5.10007918918194	5.33391237628458	5.22184164166285	4.82965544433125	5.11076672398534	-0.430454880792895	0.25435122807177	0.651334544328546
Merged-chr2-79428509-2	chr2	79428009	79429009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 1 of 12)	intron (NM_001048176, intron 1 of 12)	479.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	2.71547895996841	2.57325894780266	2.72001895651906	2.80396528759641	2.73442047625608	3.02952282887692	0.980298085326659	0.187323363400058	0.572271506774537
Merged-chr6-113690615-4	chr6	113690117	113691117	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 10 of 11)	RLTR35B_MM|LTR|ERVL	-6433.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	5.17582901965538	5.11973486139921	5.55721252887331	4.93284025454339	4.71685445028059	5.03491008665862	-0.838165897188705	0.0322665817089745	0.218279490312223
Merged-chr9-65034098-2	chr9	65033598	65034598	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	intron (NM_028906, intron 1 of 20)	1640.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	4.06451673295447	4.13885190197047	3.9702617185485	3.84949989168343	4.1010905414249	3.88661484231676	-0.311556431584336	0.537046467090169	0.854305051501396
Merged-chr9-63614767-4	chr9	63614247	63615247	+	922.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	12101.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	7.30502020187298	7.51685901631706	7.12152553152288	7.50771462764934	7.74631522187461	7.07026469492009	0.22326227459934	0.429372404365678	0.795682190695026
Merged-chr5-101861501-1	chr5	101861001	101862001	+	568.0	f1_c57bl6.idr	intron (NM_172882, intron 52 of 66)	intron (NM_172882, intron 52 of 66)	96371.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.56480567666946	2.29974264077984	2.66293349886998	2.81674322143129	2.50983441927676	2.85794236044787	1.23102764754484	0.143733308334348	0.506040497583331
Merged-chr13-36315067-4	chr13	36314570	36315570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	197427.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	4.54171099494993	4.68599785536642	4.70223573666592	4.51443807292958	4.53682948222062	4.52722837390019	-0.282276951107077	0.495929598023797	0.832801412560325
Merged-chr9-110982795-4	chr9	110982301	110983301	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028838, exon 9 of 9)	3' UTR (NM_028838, exon 9 of 9)	-6698.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	3.97629067480591	4.2823107440649	3.82137706736879	3.66549831886603	3.41257957594504	3.61792304519479	-1.61177766240984	0.00464084830774827	0.0581822669867588
Merged-chr14-103343997-4	chr14	103343499	103344499	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	2801.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.92991409457883	6.04704737054427	5.86020493623088	6.17146601282	6.61187526474013	5.94821824398813	0.573272999603594	0.0790663779101724	0.371629394630832
Merged-chr13-102889109-4	chr13	102888601	102889601	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128846.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.71372899479716	5.61612530025565	5.60282682004828	6.05194053341637	5.85055537877987	5.87660862892676	0.505984723206123	0.0998650229611223	0.4214418436146
Merged-chr11-40694471-4	chr11	40693958	40694958	+	939.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	745.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	7.16210898087287	7.64727395473941	7.2488732377822	7.42196075072616	7.80920640551927	7.44187510974125	0.293370928637147	0.280299500386455	0.678136854248135
Merged-chr6-38806912-6	chr6	38806446	38807446	+	893.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	30365.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.23801765297759	6.10573720541104	6.10864411926856	5.94287398641198	5.85293685131841	5.64365127147627	-0.567817399704319	0.0585131424998574	0.312821996988443
Merged-chr19-4065104-4	chr19	4064609	4065609	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-5662.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	4.62352610324613	4.90519713374508	5.03975125384953	5.03515267487948	5.23552734077898	4.9639329744505	0.502418975177513	0.202836284687481	0.592772302593993
Merged-chr7-80789623-2	chr7	80789123	80790123	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	13708.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.88422073050751	6.82788940088883	6.13039211062502	6.57508678913857	6.67602895855583	6.43085230962321	-0.160641440466664	0.613170558664738	0.88706961272299
Merged-chr8-25069444-1	chr8	25068944	25069944	+	638.0	f1_balb.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-30482.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	4.73469149552071	4.35545119009293	4.80271238075965	4.58592114200442	4.28786109462519	4.34395725159953	-0.5638725876468	0.216568068342017	0.610067901049387
Merged-chr13-3541675-4	chr13	3541175	3542175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	3600.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	5.09657556252899	5.3609137167511	5.49910827603896	5.42924059395513	5.38114049772805	5.71630539620506	0.361909875008873	0.310418770588357	0.705829393476587
Merged-chr16-17928083-6	chr16	17927511	17928511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153150, exon 1 of 9)	exon (NM_153150, exon 1 of 9)	208.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	7.04011153457535	7.11127194787061	7.04318987671963	7.02056580832321	6.84177636320326	6.83373467802226	-0.250967277686172	0.30147290948152	0.698200786354329
Merged-chr1-55836880-4	chr1	55836379	55837379	+	949.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-94362.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.98000790572293	3.88421965853393	4.1849326453976	4.34499720217765	4.43743770429617	4.20727210773953	0.9180259021317	0.0548754077817583	0.300982546183461
Merged-chr8-120742232-2	chr8	120741732	120742732	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	3593.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.23052952893114	6.22862916840817	6.46969317886412	6.43161195407142	6.4382541260837	5.990433841741	0.0136547470767373	0.963611575908882	0.991121100730027
Merged-chr8-34156532-5	chr8	34156044	34157044	+	789.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	1981.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	4.65670737204151	4.98912710084163	4.98437675125834	5.04773455337435	5.02067600590721	5.2435219987507	0.470654436426084	0.225299736034305	0.620134188241595
Merged-chr10-62229831-2	chr10	62229331	62230331	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	B1F1|SINE|Alu	1387.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	4.52259829778483	4.67249847541614	4.90948902049466	4.4242937466319	4.50762717291683	4.48334879676908	-0.555156231563836	0.195774019925946	0.583438527663774
Merged-chr13-58478615-4	chr13	58478117	58479117	+	983.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75274.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	7.55442464479626	7.84669321116683	7.28577519782989	7.2799141530094	7.7059778304821	7.08537210440992	-0.284051291401234	0.329456087605476	0.721399184090983
Merged-chr8-11039038-4	chr8	11038550	11039550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30620.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	6.56729008079271	6.38582498387139	6.09793964088649	5.83976571035493	5.74943586821739	5.37444089654095	-1.19073649737686	0.000335474291069092	0.00763515995932084
Merged-chr16-38523723-2	chr16	38523223	38524223	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1060.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	4.27296300291296	4.2127747899993	4.36589423163615	4.49848476974636	4.34267840376088	4.55682927648546	0.474750290655886	0.284341962220659	0.682066593417223
Merged-chr8-83064256-4	chr8	83063759	83064759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-101093.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.57115874214003	5.25668877508045	5.61844000353205	6.41922738111819	6.70768620893199	6.51246121429209	1.86167754984529	1.79370646406966e-09	1.88447888209985e-07
Merged-chr10-128821777-4	chr10	128821285	128822285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153109)	promoter-TSS (NR_153109)	21.0	NR_153109	66118.0	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	6.96632286593206	7.35097258044678	7.00400587276472	7.09661106347267	7.07773176630609	7.03492720901481	-0.082293961119813	0.747099127063463	0.936552918354416
Merged-chr8-4678476-4	chr8	4677954	4678954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	65284.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	8.81027621401015	8.99455506114803	8.63413306314438	8.86342848792062	9.26538138453904	8.63245491130796	0.177954491727417	0.479606482872833	0.824363039494411
Merged-chr6-39228815-4	chr6	39228312	39229312	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22039.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.65468637854493	5.728085659491	5.6977552697466	5.26229670272219	5.41880688801767	5.22662768268347	-0.723502643560801	0.0289359920674616	0.2041156543157
Merged-chr15-59052106-2	chr15	59051606	59052606	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	B4A|SINE|B4	29920.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.05158013935377	3.75477672712459	3.75614886610186	3.95257635472976	3.60294854893362	3.97786428105299	-0.0543817306177692	0.921202477878941	0.982526400261012
Merged-chr11-101554364-2	chr11	101553864	101554864	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 2 of 23)	B3|SINE|B2	1710.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	4.6352613959901	4.67590914324364	4.74292492505537	4.55253409651292	4.55719747727345	4.73276356859435	-0.17252596078911	0.67236146662839	0.910773962627634
Merged-chr5-115489525-2	chr5	115489025	115490025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U4|snRNA|snRNA	-5041.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	8.78082813129777	8.90360487218022	8.0539167302109	8.63105754444325	8.98675722408855	8.19212694711365	0.0178159837758982	0.954734543469373	0.989629916199511
Merged-chr9-120934139-4	chr9	120933596	120934596	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	CpG	518.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	6.86584225641475	6.87818953899519	6.77864435362634	6.93736390551726	6.49125995975594	6.79149890770766	-0.150991348019579	0.575069722594643	0.87094931637326
Merged-chr16-21289820-4	chr16	21289326	21290326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	7046.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	4.59553169790387	4.72032674244136	4.70349445274976	4.57917831212033	4.50971186784062	4.76884166988328	-0.14097409248516	0.732501873958716	0.931782229960786
Merged-chr3-108722283-4	chr3	108721727	108722727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029522)	promoter-TSS (NM_029522)	72.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	4.24680057386963	4.25968337605045	4.02364141787128	4.31957696900792	4.15507249890043	4.33042224561739	0.208610497408285	0.657059827676808	0.904749338441592
Merged-chr17-5560308-1	chr17	5559808	5560808	+	570.0	f0_balb.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67708.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.18592187305344	4.22458998042004	4.41336150038375	3.92985888025559	3.85417690321147	4.55492352358949	-0.36403075590294	0.493491054220135	0.831340547031948
Merged-chr2-51376829-4	chr2	51376339	51377339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61061.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	5.62359009748634	6.02011054480134	5.67538379037001	5.11603348188496	5.03175545290717	5.23507073023847	-1.29890198076996	0.000209457554166777	0.00519634590551855
Merged-chr11-53492213-4	chr11	53491718	53492718	+	932.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12023.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	5.16960835987277	5.31835287807773	5.16897196053847	4.44377799356782	4.79443675873532	4.59544906279892	-1.30749381450145	0.00127484022649675	0.0217682958272813
Merged-chr6-28487656-2	chr6	28487156	28488156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	7308.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	5.32866152910577	5.4137282258825	5.13153657687472	5.3525881636443	5.46831645013219	5.56869336809535	0.304784093031565	0.376894136791282	0.759474066768804
Merged-chr18-35022013-4	chr18	35021528	35022528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67677.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	5.8912627552943	6.42723178228237	5.9960720019322	5.96153950065552	5.67338557720298	5.58160920623026	-0.666700678569011	0.0493536320426528	0.282369742702326
Merged-chr17-73938257-2	chr17	73937757	73938757	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	11939.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.94355614130382	5.93927527212364	6.01988766183236	5.96928880589563	6.00637141086444	5.96621039281753	0.0307400786325681	0.915323980517292	0.980959026698783
Merged-chr11-116622332-2	chr11	116621832	116622832	+	897.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1920.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.79928443358516	6.43459313481825	6.59278471506467	6.99386739484627	6.84488350918876	6.43020007393852	0.263762731759197	0.36846733452415	0.753414016097839
Merged-chr11-104550239-1	chr11	104549739	104550739	+	1000.0	f0_balb.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	381.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	8.71252024566983	9.48537576290361	8.86904223566326	8.85222186767499	9.14263323270915	8.73776140785469	-0.202006714253912	0.465842767163383	0.817215071372066
Merged-chr16-91685291-2	chr16	91684791	91685791	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3437.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	4.98532483522003	4.82517961512934	4.48751211575624	4.38626539882737	4.72404217484491	4.36843674603045	-0.650060073071703	0.153557171564012	0.522532447327076
Merged-chr13-93996654-4	chr13	93996153	93997153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61143.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.98510736816338	6.38579121508188	6.04414682895901	5.76249604670398	5.80242651099593	5.89440086511659	-0.591891580991838	0.0560942135551308	0.305024658312333
Merged-chr2-90537772-2	chr2	90537272	90538272	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	42875.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.21031030188094	4.88580670085914	5.07908271868096	5.33226901428861	5.32068036339707	5.48483914731121	0.633310568506379	0.0796865621424999	0.37330493924061
Merged-chr19-8713828-11	chr19	8713306	8714306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008577)	promoter-TSS (NM_008577)	91.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	7.94131418491193	8.11851249945127	7.94263091167254	7.83862867718063	8.11804788998353	7.96822596807592	-0.0320288325818951	0.885468236215841	0.973611377589001
Merged-chr7-128313697-2	chr7	128313197	128314197	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-15566.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	5.73100832830475	5.31510244288841	5.80800562131498	5.90151635846116	5.90289241097193	5.66199803211514	0.37477498701599	0.26876954877509	0.665965177167973
Merged-chr10-77621683-3	chr10	77621164	77622164	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	-657.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	7.98531441869858	8.09465186787198	7.93124656340872	7.7990905013902	8.16741555536259	7.87622619688384	-0.0622704639685669	0.786796133338227	0.948628992549334
Merged-chr17-5607240-2	chr17	5606740	5607740	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	114640.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.16033157789782	4.82701760264482	4.88546098446007	4.35725767792071	4.26936947658965	4.72852102463958	-1.22466934581784	0.00507739698717258	0.0617968052117386
Merged-chr8-25720085-4	chr8	25719585	25720585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_121643)	promoter-TSS (NR_121643)	37.0	NR_121643	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	6.11999002149968	5.82287183096715	5.7155270679867	5.73987552651063	5.56007121342136	5.45623674825954	-0.56361778712413	0.0875317762339598	0.392303208650574
Merged-chr1-45860580-4	chr1	45860087	45861087	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65007.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.97003690886572	7.2573409765044	6.96591240878026	7.0643239856604	7.34564934192217	7.19272245799403	0.200400836720231	0.43071241370951	0.796522170065806
Merged-chr9-13245395-2	chr9	13244895	13245895	+	950.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033181, exon 1 of 1)	exon (NM_001033181, exon 1 of 1)	346.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	5.11871165961611	5.31871505432547	5.35341787945111	5.24691909718053	5.25422882190191	5.19616482462741	-0.0575502975792061	0.869429804895495	0.969788171765313
Merged-chr12-73607678-4	chr12	73607157	73608157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	22861.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.26626977585326	7.20613963953002	7.21290785782269	7.03252542888618	7.332400142981	7.05634597013188	-0.109127330914137	0.654995102237101	0.904048560566546
Merged-chr16-91367269-4	chr16	91366756	91367756	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5527.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.05784464699727	6.01043112405999	5.60733405437935	5.36682186418747	5.45355602166195	5.25665170810022	-1.01604169950249	0.0027812651685748	0.0397157220090565
Merged-chr10-81496461-4	chr10	81495962	81496962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134009)	promoter-TSS (NM_134009)	-99.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	6.17066781621381	6.27021969125206	6.13484001949661	6.46555437539125	6.51614193137305	6.41844364756984	0.4499739257201	0.0961623003169827	0.413411154195982
Merged-chr18-54900486-4	chr18	54899975	54900975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89705.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.30192194954926	7.1474448034994	7.08428349953739	7.31563026978798	7.69842634957114	7.3145728927636	0.414883180799376	0.102133209470619	0.426143111329095
Merged-chr11-106648513-4	chr11	106647931	106648931	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35501.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.81698672098143	4.99689172305223	4.51212913320381	4.61982900484002	4.6664436796452	4.39379261872141	-0.533000752304716	0.222426013783065	0.617394127326327
Merged-chr5-88628784-3	chr5	88628305	88629305	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45292.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	5.1252628184025	5.13459169001058	5.4016123370241	5.33817908742964	4.97567368227204	5.40711414016185	0.049987979807422	0.894070853022773	0.975337673545585
Merged-chr11-80156318-4	chr11	80155800	80156800	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2138.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	7.63438036201929	7.88124590781131	7.80022436759522	8.00105291848971	8.21603624793469	7.639543652893	0.295750860302434	0.240923612751009	0.637944627348076
Merged-chr9-43107749-2	chr9	43107249	43108249	+	557.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034863)	TTS (NM_001034863)	-2031.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	4.74651045934948	4.58317304522915	4.71125549159752	4.5792830048037	4.4365204166888	4.53621417218063	-0.401954670428949	0.333348615940961	0.724286391143082
Merged-chr10-85951650-2	chr10	85951150	85952150	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	6143.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	4.49629442159305	4.52284480205793	4.55069051476258	4.071846048137	4.47991673783465	4.31903837580532	-0.545108352651532	0.234566205041032	0.63066384868341
Merged-chr13-51843014-4	chr13	51842497	51843497	+	948.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3678.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.60189299813623	4.56437669818569	4.91916046266046	4.43672192467021	4.64735499850785	4.77597600630861	-0.170354304709026	0.691253799739553	0.918256515929559
Merged-chr7-114526446-4	chr7	114525950	114526950	+	971.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 11 of 15)	Lx7|LINE|L1	36522.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	4.67685269257749	4.50911731075045	4.82606126201225	4.7327820775254	4.75009505698549	4.85477241061051	0.253852953026884	0.531682720196162	0.851792887243639
Merged-chr15-76782890-1	chr15	76782390	76783390	+	693.0	f0_balb.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	35280.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	4.86245715585666	5.20000297830795	5.04510611734162	4.67156518455535	4.40455420920813	4.66731777021978	-1.0701135199929	0.00924752065834457	0.0953373434443731
Merged-chr8-75055881-2	chr8	75055381	75056381	+	763.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 7 of 15)	intron (NM_001136259, intron 7 of 15)	22195.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	2.50105192193061	2.46654261571583	2.74900422626508	2.65526853409476	2.5402366364066	2.57619356689553	0.106290055719925	0.891510182479801	1
Merged-chr6-116135801-3	chr6	116135304	116136304	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57570.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	6.62450275928317	6.44122742169244	6.3656346994087	6.49773678528519	6.67234660649491	6.55437353929426	0.150023298462875	0.576509809269462	0.871585692229598
Merged-chr10-81172058-2	chr10	81171558	81172558	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4338.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	3.10861706244908	2.99797121185814	3.1521843524644	2.95514962723688	2.96486697053966	3.22318707969319	-0.171637971362106	0.796991527825559	0.951597367479313
Merged-chr10-75832469-6	chr10	75831994	75832994	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010361, exon 4 of 5)	exon (NM_010361, exon 4 of 5)	2387.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	3.28127862167303	2.80407485210758	3.26855084317166	2.85664235260134	2.93884220231969	3.28596562321301	-0.428132265185768	0.561719859566701	0.865571255453378
Merged-chr4-32170327-3	chr4	32169888	32170888	+	741.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206281.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.71260193475079	4.06791217613818	4.0624844521195	4.11068877733846	4.20280278447526	4.6561796374945	1.06657003781656	0.0424583285786085	0.258213170908409
Merged-chr8-116372826-2	chr8	116372326	116373326	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132189.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.84181939415862	2.47413413714049	2.51503610251849	2.73913625060367	2.5625041951478	2.96307997763092	0.72656625227546	0.374335478397506	0.758058822552447
Merged-chr3-95883219-4	chr3	95882708	95883708	+	740.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-980.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	5.71897891498703	5.47655255325722	5.21040715050588	5.91312347460665	5.88969594307848	5.34791411023654	0.474591238811332	0.202184764384946	0.591893532524454
Merged-chr18-23872597-2	chr18	23872097	23873097	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	68627.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.2477026346134	7.40094590299417	7.18417976311263	7.23235943011832	7.49421908549857	7.06068756553733	0.00171053475325075	0.994628095037686	0.998961028701257
Merged-chr8-125721811-2	chr8	125721311	125722311	+	992.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-12392.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	2.78063780498564	2.83168413195328	3.24285162263336	2.62363970766341	2.62314305543304	2.99275633848211	-1.04439260356751	0.18164778489481	0.564123050256684
Merged-chr10-17698099-4	chr10	17697600	17698600	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.90139120642829	2.82246185175038	2.96248741671555	2.81826047879343	2.6551006862595	2.85673268604405	-0.613390197832069	0.392651390124872	0.771214636708298
Merged-chr16-15984365-2	chr16	15983868	15984868	+	550.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97082.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.48861068323824	3.52631986802787	3.5015940595173	3.33751736460141	3.53008852842019	3.67554032224811	0.043488819909941	0.940247532995383	0.986792088790777
Merged-chr18-54882656-1	chr18	54882156	54883156	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	107524.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.87468242152436	2.63363328678117	3.12835016713263	2.90929126057869	2.7676386082843	2.72794739847635	-0.419317645461277	0.579537342801598	0.872571259966152
Merged-chr11-87030301-2	chr11	87029801	87030801	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-36539.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.4675577592806	4.4259017231223	4.43919598070259	4.18181719722921	4.06982355735613	4.19601257504089	-0.80950196696974	0.0732356217918183	0.355612151127686
Merged-chr4-151071030-3	chr4	151070507	151071507	+	744.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-13054.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	4.13648582202319	4.40402951192888	4.71763456042451	4.13576598373243	3.87406305362682	4.09534691997178	-1.09431919941458	0.0301068503711495	0.209475357108058
Merged-chr10-67297711-4	chr10	67297201	67298201	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	5.44432304972966	5.66299830396565	5.47858467258928	5.43142216382867	5.67585424409956	5.54158551417441	0.0427695947441713	0.897435356590121	0.976013294529412
Merged-chr19-55769008-2	chr19	55768508	55769508	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	27198.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.80600489043443	3.68534281708792	4.05482013200327	4.13854290347559	3.97490545921989	4.25443099451091	0.82319597076029	0.110666020299475	0.444566128377285
Merged-chr7-125623316-4	chr7	125622770	125623770	+	963.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	19841.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.52672549664497	6.4914179830596	6.5285786873661	5.66181074117554	5.61786728265595	5.25443917133788	-1.68963356896115	9.59454169212745e-08	6.88820211491407e-06
Merged-chr8-46211066-4	chr8	46210574	46211574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007450)	promoter-TSS (NM_007450)	-12.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	5.53198424211415	5.25019544952183	4.97872377929425	5.10904375488266	4.87608033265001	4.88941577503247	-0.66929113708373	0.0871220687577386	0.391280460797426
Merged-chr18-34859902-4	chr18	34859404	34860404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1303.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	7.52716197517717	7.34852128146826	7.36862521878232	7.50750991682962	7.59370705598277	7.47872051511136	0.163409356120973	0.470994835388781	0.819817133776037
Merged-chr11-116132549-2	chr11	116132049	116133049	+	676.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_024177, exon 8 of 9)	exon (NM_024177, exon 8 of 9)	-1421.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	3.5067882612682	3.36168834890141	3.59869276962809	3.77117647744516	3.12469359148222	3.61726248989813	0.150181082196922	0.816116599998626	0.956616423430214
Merged-chr13-21718785-2	chr13	21718285	21719285	+	795.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178206)	TTS (NM_178206)	1157.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	3.18114459817024	3.45449790775189	3.36115959103598	3.58754743030758	3.67328858420623	3.59939121610365	1.0561993585332	0.0760843608174818	0.363110266412448
Merged-chr2-165994647-1	chr2	165994147	165995147	+	770.0	f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	2010.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.69733533240967	4.77414684281196	4.99291949930456	4.8189480726367	4.75332350468307	4.95524408445683	0.0454224553293722	0.908687682917909	0.979303760235123
Merged-chr5-142629478-4	chr5	142628996	142629996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178398)	promoter-TSS (NM_178398)	-88.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	6.26303548563028	6.21248661135959	6.40752425597257	6.2863367838391	6.36834867592266	6.35567587382802	0.0788251297956087	0.772576320432814	0.943821638461157
Merged-chr11-75733455-4	chr11	75732962	75733962	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 1 of 5)	CpG	575.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	7.5609031814994	7.51051418084196	7.61376025584234	7.31795335328895	7.19402386558105	7.46985025283623	-0.34664914477226	0.133172617297397	0.488237008287004
Merged-chr11-54883405-2	chr11	54882905	54883905	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	17022.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	4.56824081583551	4.72013493396771	4.92802835625436	4.44098416479237	4.25621861749164	4.46802348507502	-0.875825683859941	0.0442676984588542	0.264823254969037
Merged-chr5-143731719-4	chr5	143731235	143732235	+	860.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	CpG	545.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	6.90300895358278	6.33211661104463	6.59456254522381	7.00318646783216	6.70587166823263	6.5842112493879	0.229039629012601	0.446656037008636	0.806100108763013
Merged-chr8-56313806-4	chr8	56313329	56314329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	19277.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.8090238868349	6.05437926998704	5.71527800689042	6.01361282012459	6.10094396188661	6.36623217993236	0.496924607752854	0.112433251839068	0.447881368203042
Merged-chr11-23846616-4	chr11	23846130	23847130	+	961.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48640.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	4.22779790289893	4.02775569250799	4.06577361108038	3.81030520078141	4.05429125984803	3.83134481796712	-0.590730886993396	0.247015702549484	0.644045601901006
Merged-chr12-91747936-2	chr12	91747436	91748436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38500.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.35561526903668	7.22839748806548	7.17371973678822	6.8454218126852	7.14202837949155	7.09404471449262	-0.334541450184106	0.175011996795565	0.554700648631989
Merged-chr11-116671609-4	chr11	116671101	116672101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-59.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	6.97320972690554	6.96002572568865	6.96801348983919	7.03160569148255	7.09740410076969	6.9133502848187	0.0844503173362277	0.725238103871477	0.929602807794907
Merged-chr11-98754208-4	chr11	98753708	98754708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	12423.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	7.07541816617647	7.11360041851863	7.07757634184463	7.22233832901978	7.37643564958415	7.4438399111364	0.387832383801448	0.0973899262790788	0.416135657941618
Merged-chr1-66701658-2	chr1	66701129	66702129	+	639.0	f0_balb.idr|f0_c57.idr	exon (NM_001310642, exon 2 of 7)	exon (NM_001310642, exon 2 of 7)	798.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	5.81064195983604	6.45853374510372	6.16379385843421	6.13612775916035	6.10516221617971	5.95288668267951	-0.178427873907895	0.584483018250933	0.874568023559098
Merged-chr3-87338132-4	chr3	87337624	87338624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-19757.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	7.56956362304243	7.50264157532999	7.44543823005539	7.72558448382679	8.12798556017765	7.43726953088808	0.431497879074539	0.105619865913039	0.433760317994776
Merged-chr11-50271581-2	chr11	50271081	50272081	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B1_Mur4|SINE|Alu	20755.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	2.910432821093	2.89284403538489	2.98038550472205	2.97763953888875	2.80915976379537	2.99370473975411	-0.00660132610688387	0.992329593526194	0.998523796268552
Merged-chr8-83165412-4	chr8	83164891	83165891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	39.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	8.83316667668887	9.33224726635237	8.65237751809937	8.55025980431462	8.82768111992467	8.45925561842406	-0.483742500425306	0.0652700307099848	0.333046465647662
Merged-chr17-27204496-4	chr17	27203992	27204992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146075)	promoter-TSS (NM_146075)	-54.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	6.71863637661029	6.29286514784666	6.67389349957403	6.62505154122496	5.72849585738389	6.19093714987503	-0.553243581865417	0.119878201371494	0.462868927133143
Merged-chr4-146520790-2	chr4	146520290	146521290	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045468, intron 2 of 2)	intron (NR_045468, intron 2 of 2)	5870.0	NM_001243139	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	2.44598082837777	2.56150286910884	2.76044348172702	2.63003866957387	2.68177902341197	2.89114882040063	0.797161166935456	0.305618384492944	0.701727269982308
Merged-chr2-36231164-4	chr2	36230646	36231646	+	901.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	720.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.87182246891946	7.20932195249767	6.83643259667221	7.26694158004742	7.21791610116497	6.4903107042483	0.0915912219051398	0.770628858555668	0.943422411129892
Merged-chr13-68582112-4	chr13	68581614	68582614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	-10.0	NM_001308475	210009.0	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	6.17239514825753	6.56589595620906	6.24305121135076	6.3885567931067	6.49135403534685	6.12978152207436	0.0163488644218727	0.956532459113009	0.989887454023164
Merged-chr8-25448132-4	chr8	25447622	25448622	+	949.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-70637.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	4.40244121884676	4.20074560282727	4.42496306317363	4.01933040151768	3.68502816458401	4.19481658590753	-1.06599667265263	0.0379076394315377	0.240816831716246
Merged-chr1-138614703-4	chr1	138614191	138615191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	5066.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.27816795822285	6.21360976636087	6.09633710353521	6.0834355069809	5.96295891722202	6.2202526579694	-0.203022105678671	0.480375806485142	0.824543506620807
Merged-chr7-126772881-1	chr7	126772381	126773381	+	625.0	f0_balb.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-4094.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	5.57708721429638	5.59916195891465	6.14386222978724	3.81517327381281	3.68590460902711	4.0941515916243	-5.90937798025617	2.93469169571189e-15	8.42033884885498e-13
Merged-chr13-49220809-3	chr13	49220299	49221299	+	760.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4773.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	3.24256515875214	3.28202100367475	3.19080009807795	3.76992257885858	3.52616592761555	3.50265805893358	1.39565485548763	0.0221034943059836	0.172612628269572
Merged-chr17-72904683-1	chr17	72904183	72905183	+	563.0	f1_balb.idr	Intergenic	Intergenic	-13622.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	5.02158032919412	5.18111230964962	5.18088407574349	4.88103993122353	4.70292841785522	4.97788356509046	-0.607463684375557	0.109521473332089	0.442209955018267
Merged-chr6-48047761-4	chr6	48047262	48048262	+	682.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347139)	promoter-TSS (NM_001347139)	32.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	2.99734482384381	2.75853836918168	3.14376832327141	3.16948899618072	2.58100511931492	2.86020067122222	-0.368509535974913	0.640685149701788	0.898535815546711
Merged-chr17-72904018-4	chr17	72903514	72904514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14291.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	6.36563761451232	6.1954581174138	6.20947460153518	5.79946861348305	5.76163035322872	5.58061822101559	-0.931961263261061	0.00186170806054375	0.0292281140191933
Merged-chr19-9071630-4	chr19	9071156	9072156	+	970.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104460, intron 6 of 6)	intron (NR_104460, intron 6 of 6)	16300.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	3.36233115093342	3.30398856788839	3.64577275235836	3.36099067837891	3.32846855773471	3.23065125834993	-0.49493322331059	0.422002089147446	0.790890351677569
Merged-chr3-136725582-5	chr3	136725034	136726034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	55468.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	6.42899811294875	6.73349184663034	6.26058949054795	6.42691227370937	6.70248951281098	6.56951592744325	0.119381586135809	0.680145826375599	0.914139397449033
Merged-chr8-70865802-4	chr8	70865284	70866284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7706.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	7.68351455241993	7.27514934579034	7.0179725660614	6.81463412476843	6.8603056453628	6.67404319309621	-0.86828281487977	0.00213448294993565	0.0324451825015412
Merged-chr5-64414635-2	chr5	64414097	64415097	+	605.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	53345.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	2.79982119017252	2.83812607420556	2.86167403111949	2.68616624257747	2.77806641031566	2.75091372590675	-0.481285070301865	0.502989519884049	0.836691193058519
Merged-chr13-14068220-4	chr13	14067721	14068721	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	T-rich|Low_complexity|Low_complexity	4437.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	4.03831156109159	4.31449322411057	4.17333180603222	4.10150138136097	4.30042556211622	4.41578393556534	0.254249088477205	0.592971062284857	0.878372430224994
Merged-chr10-121580731-2	chr10	121580231	121581231	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	6063.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	4.56749512960679	4.8465460424448	4.74606089067908	4.36633837384879	4.65426331811415	4.39604420923449	-0.56743287873804	0.193063709418454	0.580258086808407
Merged-chr4-53041515-2	chr4	53041015	53042015	+	930.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 43 of 49)	intron (NM_013454, intron 43 of 49)	29635.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	1.97886584064529	1.87521558986332	2.10868342266694	1.78080064961196	1.74094679428518	1.98761637332278	-1.33722748630487	0.192100777414277	1
Merged-chr12-116436373-4	chr12	116435898	116436898	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30996.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	3.98928756616358	4.16905125801821	4.92457630775713	5.33559066106988	4.9792042017588	5.18297172013987	1.7255916967401	0.00076976623525521	0.0147491371812477
Merged-chr7-31111231-4	chr7	31110722	31111722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-225.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	7.94547015985864	7.73544225928143	7.01482703845187	7.91068091982223	7.87419723109814	7.30603846007942	0.14096365858455	0.665145689150826	0.907762144972922
Merged-chr15-78587913-2	chr15	78587406	78588406	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6317.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	6.04509674143312	5.44041447298595	5.8725052850266	5.98915153880663	6.05191546636642	5.72824670565501	0.226913897918939	0.510239583945497	0.840794353853807
Merged-chr17-23965818-2	chr17	23965319	23966319	+	763.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9411.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	3.39198971793576	3.37740980425192	3.16265912877753	3.49080297578896	3.0841579860229	3.29665533793118	-0.0795421286768732	0.902185572541833	0.977426235982703
Merged-chr3-8691766-8	chr3	8691283	8692283	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-24745.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.16796401571345	4.24175289903727	4.06317547040062	3.88268806896979	3.80999131383059	3.82790571032761	-0.979884560790358	0.0492145735868059	0.281950305632811
Merged-chr11-101302311-4	chr11	101301818	101302818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-32.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	6.94070601870588	7.35072250720161	6.86535296990475	7.19675836324071	7.24199158370613	6.99690337734084	0.112859390979115	0.675979749820034	0.912421384593547
Merged-chr5-5559553-4	chr5	5559045	5560045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-4.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	6.24788045791387	6.65652552361393	6.17897256499805	6.17535643134094	6.30284445362738	5.83084925918099	-0.435199540162859	0.178680014782281	0.560022415863315
Merged-chr8-119862201-4	chr8	119861727	119862727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146219)	promoter-TSS (NM_146219)	-78.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	4.79332136648488	4.87197996546798	4.9851791813892	5.22502200244311	4.65906960905525	4.70810111568327	0.0236831983064518	0.955236037359876	0.98974202431386
Merged-chr5-90903229-2	chr5	90902727	90903727	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-672.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	6.35325306884124	5.8867676665658	5.89603667420831	6.16393207278789	5.63038393483419	5.80443290297226	-0.322961713808515	0.350293249431368	0.738319835221541
Merged-chr2-31165727-2	chr2	31165227	31166227	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	13411.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	4.1234422708213	3.68131550284142	3.75124315621049	3.7833630487304	3.31814702183988	3.55085165488432	-1.08336247345023	0.0766459744360269	0.364755288612704
Merged-chr10-85388921-1	chr10	85388421	85389421	+	616.0	f0_c57.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	2107.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	2.57470138109279	2.64021152189259	2.9331240759878	3.33057482844396	3.2532911627395	3.40846170205093	3.41961002772626	7.12846780559816e-05	0.00212292608864786
Merged-chr18-80707770-4	chr18	80707263	80708263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	CpG	410.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	8.20736334451196	8.06931348685528	7.60027227149802	8.20527756950144	7.82100165015117	7.94869190196605	0.0128904010808245	0.961009708151371	0.990386809359123
Merged-chr19-56721215-4	chr19	56720736	56721736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	8.40150127022455	8.49739910329727	8.07403500486869	8.14190907435246	8.48005188520038	8.02505961818404	-0.146230856407793	0.555804714606416	0.863404501026261
Merged-chr2-32966223-3	chr2	32965720	32966720	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	2919.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	7.62128931434892	7.9095592173792	7.34956805549505	7.73895162627091	7.69039638506374	6.96401985737865	-0.192930328806637	0.530885767622531	0.851363932161699
Merged-chr2-31974398-4	chr2	31973920	31974920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172268)	promoter-TSS (NM_172268)	-30.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	7.54324297389086	8.17836982073516	7.63115839614437	7.62598001184405	7.91815096783262	7.40837692678275	-0.211982566484966	0.461501271497197	0.814992635038861
Merged-chr2-154406794-4	chr2	154406266	154407266	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 1 of 7)	MIR3|SINE|MIR	1318.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	5.90634366721202	6.41727160907153	6.22602530710322	6.06399998005153	6.49276379081496	6.09303276482907	0.0681702376356927	0.833727534934691	0.961104751385188
Merged-chr11-83657586-3	chr11	83657086	83658086	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4998.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	5.19959190955046	5.2225730684897	5.29635132509012	4.99013856114923	4.99925038553267	5.47290631858919	-0.159486505365023	0.672008216661064	0.910719060610024
Merged-chr2-129360317-4	chr2	129359819	129360819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9583.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	6.42299595849796	6.15783639871572	6.09217524848026	5.97652471165636	5.99692780532064	6.15285132371377	-0.339798629986294	0.248519191284418	0.645626927734048
Merged-chr3-30993268-4	chr3	30992765	30993765	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2506.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	4.30585235947971	4.37204351681656	4.69711997037726	4.41133933404863	4.40441570969395	4.89874588241923	0.299071375924798	0.521102263790334	0.846922225237145
Merged-chr14-50846921-2	chr14	50846421	50847421	+	883.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 19 of 55)	exon (NM_009351, exon 19 of 55)	23633.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	2.62077843290256	2.62177564470586	2.59920244074217	3.19752841132012	2.72301185865093	2.93542233651184	1.84526899867507	0.0183467260806552	0.152781663702878
Merged-chr7-88231347-4	chr7	88230856	88231856	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46729.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.29905689987039	7.3939532866373	6.48966976792121	7.20865374953367	7.52029489934655	6.89042691332329	0.1615276081102	0.634033488827257	0.896247399650521
Merged-chr1-161131479-4	chr1	161130931	161131931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039482)	promoter-TSS (NM_001039482)	48.0	NM_001039482	226541.0	Mm.255165	NM_144876	ENSMUSG00000026705	Klhl20	AI504637|D930050H05Rik|Kleip|mKIAA4210	kelch-like 20	protein-coding	6.21339037503335	6.4867947036287	6.43025625764103	6.35649133673071	6.3124980000659	6.41674857477968	-0.0358939848046409	0.896377442676241	0.975806926657291
Merged-chr2-91187620-4	chr2	91187020	91188020	+	721.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 7 of 9)	intron (NM_001355279, intron 7 of 9)	-4473.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	4.61745036577663	4.40855743387974	5.01266795406961	4.49299278525854	4.64413551654196	4.7349331946764	-0.155862299050313	0.726955208220623	0.930086065338964
Merged-chr6-97482869-2	chr6	97482369	97483369	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4951.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.68766600688463	6.36390670876573	6.75919339784266	7.19806527799792	7.13896139799419	6.52818038994838	0.603338619175204	0.0480370506263586	0.277863532048526
Merged-chr12-17770750-4	chr12	17770245	17771245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	79936.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.83546837625633	4.71965630969729	4.77472728063235	4.71893467352963	4.59994276882071	4.557292525357	-0.348511183255063	0.386734784593761	0.767199789158823
Merged-chr19-5806563-2	chr19	5806063	5807063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	8.07197433621718	7.78489152189544	7.68513006445146	7.73403179081149	7.99284584026496	7.5257495031912	-0.126935845854922	0.617200723126831	0.888787504465168
Merged-chr13-111509491-2	chr13	111508991	111509991	+	874.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-19364.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	3.83948789731229	4.05443063512214	4.11842882038432	4.07320202213708	4.43912748885299	3.93931209889425	0.499433786513661	0.33475015208447	0.725198429760335
Merged-chr2-32835907-3	chr2	32835406	32836406	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	11326.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	4.83884765939827	4.78361227062981	5.00059069669932	4.30454951975427	4.6161445988553	4.86111669016387	-0.616242081467292	0.152956018837426	0.521519603975764
Merged-chr2-13415673-4	chr2	13415193	13416193	+	851.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	76183.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	3.29879318650442	3.29304259194469	3.26928685824864	3.12300324460076	3.22078229859844	3.50132381189035	-0.0129279392843725	0.983582401092811	0.996388287912135
Merged-chr5-136566499-3	chr5	136565967	136566967	+	752.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291233)	promoter-TSS (NM_001291233)	-486.0	NM_001291233	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	5.29940520151046	5.4150076441695	5.31482011386865	5.26652867653189	5.3128870286376	5.11109607310679	-0.209837306394525	0.544841357756907	0.857895653540487
Merged-chr12-55299545-4	chr12	55299046	55300046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021529, intron 2 of 13)	intron (NM_021529, intron 2 of 13)	-3091.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	5.45429417341354	5.53962145852802	5.32459880357431	5.46936854328935	5.37416805251586	5.35661124139778	-0.0934271834772181	0.780017782002679	0.945949149660645
Merged-chr3-116008245-4	chr3	116007748	116008748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-49.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	8.18098931555745	8.14354019836894	8.05465379240571	8.02086840720692	8.23562565765364	7.91274832174995	-0.0836128519480481	0.704318893815179	0.9223772679418
Merged-chr12-82470778-4	chr12	82470281	82471281	+	966.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-146144.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	3.88651089641865	3.95993594921377	3.77137899392138	3.96381924981045	3.95118117160087	3.67591828572122	-0.00552945932145153	0.991638768576104	0.998326662880324
Merged-chr5-3356081-4	chr5	3355578	3356578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	12185.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.54592934409248	7.40415090945642	7.34134014226108	7.37833127486269	7.34319935639782	7.14685607330643	-0.203586544238539	0.387198346033819	0.767462350491678
Merged-chr16-20827256-2	chr16	20826756	20827756	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-92745.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	3.49255372067566	3.48745750468604	3.6233299346719	3.71213162580779	3.43726264617443	3.84147382338606	0.468447720614443	0.415514878469251	0.786473510786138
Merged-chr11-117834530-2	chr11	117834030	117835030	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 4 of 10)	ID_B1|SINE|B4	-8516.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	2.36290622108982	2.28957420072911	2.43658114624992	2.21418334911032	2.01594672184523	2.38482346900591	-1.07500356303153	0.244942153609019	1
Merged-chr8-68206913-4	chr8	68206406	68207406	+	907.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69622.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	6.24849434118788	6.3341559086556	5.87371188802412	5.90156632980574	6.03613057470529	6.00937149681616	-0.334037608113837	0.274503418775798	0.671810361172288
Merged-chr1-39418060-3	chr1	39417552	39418552	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	50201.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	3.69208152800049	4.07278685237103	3.73402440201685	4.04534292268606	3.76383671158488	4.05666031828872	0.322443984459589	0.553503385048107	0.862260304852431
Merged-chr12-111433732-2	chr12	111433232	111434232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8929.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.85492312250481	4.4257528469083	4.42941463233209	4.72559682096353	4.1434184200942	4.66492449640187	-0.145146683806225	0.7652454906012	0.942137701159565
Merged-chr1-34522435-3	chr1	34521938	34522938	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13210.0	NM_007685	12627.0	Mm.2531	NM_007685	ENSMUSG00000026124	Cfc1	AV265756|b2b970Clo|cryptic	cripto, FRL-1, cryptic family 1	protein-coding	2.69555715979664	2.85382273224557	3.03918747063569	2.59411223107562	2.73970943954904	2.49691456169582	-1.32198864745017	0.1041449342759	0.430443656429021
Merged-chr12-69514139-2	chr12	69513643	69514643	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38593.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.05574819670456	3.98224873387542	4.05377346304275	4.86271759857186	5.05939871893808	4.12853903520022	1.85700851024132	0.000325903888023751	0.00745814376091316
Merged-chr15-33115011-4	chr15	33114500	33115500	+	740.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	31871.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	3.44506667608769	3.22079534154603	3.33872443387344	3.40078197272282	3.25933772841288	3.5706888420469	0.274502253274706	0.653869153714542	0.903558174250044
Merged-chr17-4922823-4	chr17	4922311	4923311	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72263.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.91425862661597	3.86483887814012	4.02652851117464	3.81029705590438	4.01954231983727	4.04799290056272	0.0948029975833246	0.85094533102617	0.965007006719441
Merged-chr18-5806513-4	chr18	5806020	5807020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213873.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	7.24879621787838	6.9000191676561	7.056001172531	6.72575660824501	6.70042802016294	6.85432866174546	-0.492761709159942	0.0553088983202853	0.302315102899185
Merged-chr18-49642938-4	chr18	49642413	49643413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112688.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	3.85576714898231	3.81989287896599	3.83587908282095	3.58921293452468	3.4737181385219	3.53631271130889	-1.05778377087456	0.0535676783242146	0.29681126687492
Merged-chr4-137871622-4	chr4	137871112	137872112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	9375.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.18652222507474	5.08502383006247	5.40001764608492	4.56752649826133	4.59111592467826	4.22094755875716	-1.67449436652354	0.000135601321188846	0.00366638001489907
Merged-chr11-109365510-4	chr11	109365018	109366018	+	704.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1864.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	7.22904218963278	7.3263844247216	6.89432327145532	7.47735566904788	7.75457279179776	7.12545073517196	0.46921719635468	0.097096724994434	0.415511420471024
Merged-chr11-75142229-2	chr11	75141729	75142729	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	25923.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.38349432637788	4.70290250972978	4.48243606554583	4.48446982109697	4.49705108788119	4.37288133315634	-0.193343743168203	0.658776859952731	0.905072911096446
Merged-chr4-107364316-4	chr4	107363811	107364811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3473.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	5.01269205451949	5.0007830887449	5.33084903980402	4.9643579628743	4.89969363327279	5.39300532577616	-0.0483745179214104	0.902779014445262	0.977585531827525
Merged-chr8-125183607-3	chr8	125183074	125184074	+	809.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129379.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.44307078564592	2.706745990124	2.85851013287756	2.45724638276766	2.2334918035407	2.37423671081468	-2.08106758997393	0.0206142095419212	1
Merged-chr6-29696123-4	chr6	29695614	29696614	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	1900.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	2.9072965964618	2.56536532476632	2.84937553105011	2.70999252750761	2.71301783090463	2.47004699157422	-0.761846651917995	0.348831350073327	1
Merged-chr4-129811576-4	chr4	129811073	129812073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-8906.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	8.62100297434866	8.40343457555148	8.20501633557499	8.75173556796798	9.06329010021521	8.19063242286786	0.416805706031498	0.141204001227152	0.501979601184758
Merged-chr11-70221087-5	chr11	70220531	70221531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-37.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	5.82116079980062	6.20882346897308	6.21515433308017	6.10607009111078	6.23473405909237	6.19400643077734	0.153180976208623	0.610898354923161	0.885849400663435
Merged-chr16-23231852-3	chr16	23231291	23232291	+	846.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	5770.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.7564345177033	5.61395637354573	5.58256556586665	5.62379608908554	5.56256702937878	5.64507635259861	-0.0919621416636569	0.771276423932652	0.943589735529798
Merged-chr10-128374646-3	chr10	128374174	128375174	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2450.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	4.64499735879935	4.82815042725668	5.13768145257779	4.94329744157053	5.11898146886612	5.13764239237352	0.42460337518773	0.284401608691021	0.682131011644255
Merged-chr2-13537886-3	chr2	13537378	13538378	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	6786.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	5.65148446353482	5.66680856083253	5.85985293172809	5.6007499776419	5.94770839411691	5.94397833728962	0.215643606435707	0.501109059613725	0.835440646332086
Merged-chr9-65671706-3	chr9	65671210	65672210	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4838.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	2.87217044481535	2.88374645324511	3.40336634893225	2.64700378270419	2.7070631403865	2.75697378331037	-1.84480216460233	0.0185230100745237	0.153646412171797
Merged-chr9-66946379-2	chr9	66945882	66946882	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001361106)	promoter-TSS (NM_001361106)	-31.0	NM_001361106	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	7.51202739824734	7.7439411999729	7.57291911150424	7.25285981936314	7.40681922379075	7.41960600689873	-0.373906969393168	0.106075104443775	0.434728724353921
Merged-chr17-46160282-4	chr17	46159804	46160804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-728.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	7.53308685743117	7.80860227180201	7.7402538496896	7.8495115015105	8.25685930235198	7.97413761207515	0.492692062418611	0.0405049428433336	0.250766770799973
Merged-chr4-53794395-3	chr4	53793990	53794990	+	886.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14785.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	3.23113695854122	3.33868557755934	3.2228699217836	2.82618814597316	3.1948445009262	3.12034348198966	-0.884869148981183	0.20208188223449	0.591773948258361
Merged-chr5-108629179-2	chr5	108628678	108629678	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028223)	promoter-TSS (NM_028223)	599.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	8.42087993081148	8.68371274082541	8.29502290009848	8.42899327986132	8.40840531349449	8.46790809250107	-0.0664679562132632	0.760781945367613	0.941002855722266
Merged-chr17-35210346-4	chr17	35209828	35210828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4977.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	8.51875749285283	8.25317215809165	7.89290585269077	8.23457158500039	8.65473531905593	7.8451035494473	0.0616005373525813	0.835441099855975	0.96170894730835
Merged-chr10-122053710-1	chr10	122053210	122054210	+	591.0	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-6395.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.62958104832493	3.66931314199082	3.46023020235898	3.55242004032758	3.43820319852984	3.41663559100671	-0.449443312893544	0.435231297917476	0.798935749708325
Merged-chr1-138210818-4	chr1	138210324	138211324	+	762.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35519.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.47574439586016	3.28246672325211	3.47882769908951	3.52498700974179	3.02408246075754	3.26941957911998	-0.492034009036125	0.451426180311485	0.80905909605502
Merged-chr3-105019893-4	chr3	105019387	105020387	+	967.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33066.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.91199973443798	6.90422808283552	6.83014898959247	6.75769334120531	6.6704595600323	6.78333764188148	-0.235304065426438	0.339543052824278	0.729313720985741
Merged-chr13-55322537-2	chr13	55322037	55323037	+	772.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009000)	promoter-TSS (NM_009000)	482.0	NM_025596	66494.0	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	5.26559996249069	5.14133356116974	5.56707805408994	5.30649048935818	4.92724259831788	5.26121374609296	-0.322176576739599	0.395959217271981	0.773231268695054
Merged-chr12-59207115-5	chr12	59206569	59207569	+	944.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	B1F|SINE|Alu	12414.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	4.07512331931152	3.7199353060692	3.71827545631366	3.67776051673623	3.66039301663928	4.41296748951123	0.331452043464485	0.584266129012678	0.87456162664244
Merged-chr14-74774360-3	chr14	74773843	74774843	+	823.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	42046.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	4.66155337689441	4.96705471643841	4.4468593158789	4.12942860312591	4.55587215032934	4.64174486132695	-0.620942987585449	0.190396671209017	0.576658035815524
Merged-chr9-90217072-2	chr9	90216572	90217572	+	676.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53697.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.26294408136254	5.91690033094693	6.43243255046876	6.11296073645517	6.28009130723319	6.49155220320305	0.143734982408066	0.643857878843763	0.899990653857957
Merged-chr12-3857319-2	chr12	3856819	3857819	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	4925.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.46574732378407	5.65230446032578	5.77538638612852	5.73787094053334	5.49352514136041	5.22187678765479	-0.22831594994575	0.515503372944875	0.843726062787128
Merged-chr9-101035670-2	chr9	101035170	101036170	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-786.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	6.14814970033146	6.62904982532336	5.86636582172667	5.50917875635738	5.70580745403557	5.49914378822748	-1.19939208513208	0.000678712775859618	0.0133730363849697
Merged-chr3-137956055-4	chr3	137955550	137956550	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	25499.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.38259941689436	6.01578414359695	5.96325978703429	6.24882776926991	6.32656962912025	5.67011406155089	-0.0221399860617524	0.948557673646633	0.988151190239158
Merged-chr19-23862944-2	chr19	23862428	23863428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	MLT1E2|LTR|ERVL-MaLR	104052.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	2.64841238542148	2.84371153801407	2.86802508231623	2.92775403390353	2.83755446864134	3.05743580789638	0.75112787570133	0.295277174187872	0.692154917593724
Merged-chr10-99264680-5	chr10	99264179	99265179	+	865.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 2 of 3)	exon (NM_026268, exon 2 of 3)	1448.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.50370553103634	7.91784901411454	7.12067501304099	7.64743613616554	8.03318214745171	7.62533623074011	0.319795625409541	0.279978112092433	0.677712405642304
Merged-chr2-169958419-4	chr2	169957917	169958917	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	4770.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	5.59714262506201	5.35471096391935	5.26760256032462	5.26804110570614	5.30225398446248	5.45487750948396	-0.162443054352338	0.640118718484598	0.898316776760211
Merged-chr2-38486802-2	chr2	38486302	38487302	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24895.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	3.82201782221183	3.49859750087925	3.79940561528632	3.51288817799414	3.54800837989554	4.00611242815874	-0.0409486151717533	0.944417826336099	0.987719484242428
Merged-chr7-47058236-2	chr7	47057736	47058736	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7596.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	3.88902306431431	3.90879805504165	4.07288914731374	3.91891851976502	3.75426159772069	4.14024169060058	-0.0533945992540986	0.91766524278575	0.981718564389729
Merged-chr11-107340946-3	chr11	107340460	107341460	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	Lx8|LINE|L1	129760.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.88772120894446	6.95488725261006	6.39171710253662	7.15375520501217	7.14449863298108	6.79784292790039	0.410374572208202	0.157643741059106	0.52908202861787
Merged-chr14-30255943-3	chr14	30255394	30256394	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	97592.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	2.66199486942094	2.86173299071872	2.85850102809442	2.86011679520387	2.69781296111881	2.74666570036562	-0.140223213807266	0.84751953864886	0.964318271116593
Merged-chr1-173426536-4	chr1	173426043	173427043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5939.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.14918615045124	6.96049769195036	7.08029774697978	7.26218251139546	7.37941503324759	7.30636867645204	0.381034688398451	0.105402469557337	0.433339508714069
Merged-chr9-15278434-2	chr9	15277934	15278934	+	814.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_144933, intron 1 of 11)	intron (NM_144933, intron 1 of 11)	1433.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	3.66465719923569	3.72099715840298	3.3529327840049	3.56320362068793	3.35487071314244	3.59708261948934	-0.332143252954776	0.577687686229327	0.87219514592351
Merged-chr7-35235490-4	chr7	35234997	35235997	+	794.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20152.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	5.92246549430214	5.56822671791543	5.7749465232293	5.86566754042472	5.76516617494363	5.9335327219341	0.158488036281087	0.616432034942736	0.888359083506792
Merged-chr10-20123559-4	chr10	20123027	20124027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 23 of 29)	intron (NM_008580, intron 23 of 29)	-25393.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.6725246638309	4.70769761595514	4.78040833785877	4.60945791260053	4.36056331198411	4.77186263593017	-0.334276738821525	0.429614438512219	0.795827826691029
Merged-chr9-56100178-4	chr9	56099682	56100682	+	863.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	10206.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.2839019375672	4.35368543456972	4.45396478782304	4.48975576765304	4.12111714468082	4.21115761430128	-0.21068001085325	0.649667772769604	0.902262496828066
Merged-chr16-17562076-4	chr16	17561577	17562577	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029053)	promoter-TSS (NM_029053)	192.0	NM_001159561	18440.0	Mm.8032	NM_011028	ENSMUSG00000022758	P2rx6	P2rxl1|P2x6|P2xm	purinergic receptor P2X, ligand-gated ion channel, 6	protein-coding	5.38148516321163	5.49040774996483	4.66519795990816	4.10799936061409	3.79405158411659	4.02731783177656	-3.29339576824514	3.47442075702984e-10	4.11822795371708e-08
Merged-chr10-60080833-2	chr10	60080333	60081333	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-25424.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	3.37058715432367	3.25612145948419	3.47201537750508	3.15579223319726	3.02956925820003	3.32961433331497	-0.813885981259563	0.202067875410491	0.591773948258361
Merged-chr13-59000270-2	chr13	58999770	59000770	+	834.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192573.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	7.06300121299844	7.3191570272918	7.08182506799597	7.21179227371626	7.53892868264006	7.16542489703297	0.240633209859148	0.348857448270837	0.736781830441133
Merged-chr15-58034178-5	chr15	58033658	58034658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029418, exon 1 of 6)	exon (NM_029418, exon 1 of 6)	136.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	7.10327813164369	7.37509279218818	7.17449915608458	6.93985119813283	7.17816984825318	7.08157626630196	-0.229440976344074	0.354678208075329	0.741838331331706
Merged-chr14-46735728-1	chr14	46735228	46736228	+	549.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-24813.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	3.86967843275543	3.66932343576702	4.22343827698836	3.78804256879149	3.83805745809094	4.12137787638357	-0.041219742764341	0.940184783101399	0.986792088790777
Merged-chr8-105299159-2	chr8	105298659	105299659	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 4 of 9)	intron (NM_148952, intron 4 of 9)	1496.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	2.80071171007946	2.7260035782828	3.33887563041721	2.92369161479408	2.94195866757428	3.09157203034953	0.0290436959960216	0.969023769135228	0.992925679234087
Merged-chr16-29597296-3	chr16	29596739	29597739	+	946.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 5 of 28)	intron (NM_133752, intron 5 of 28)	17905.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	4.8343037630054	4.9566105110934	4.68307686387539	4.40871392588957	4.49166540741737	4.30603763952782	-1.02094752759014	0.0166989610805484	0.143319974583834
Merged-chr11-74523768-4	chr11	74523273	74524273	+	880.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	66385.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.81803559465931	4.27900064888173	4.32771508037302	4.62435689356513	4.23457993777954	4.44214942452524	-0.163361536831103	0.735043610506062	0.932617455907478
Merged-chr8-26950046-3	chr8	26949564	26950564	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-27272.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	3.39285325359817	3.25258169401841	3.23002680289213	2.87380478339198	2.67683997163103	3.13026052287832	-1.91615487580341	0.0108419099397511	0.106375923753756
Merged-chr18-4325347-4	chr18	4324843	4325843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	27610.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.05721984642114	5.803923620608	6.05874726818376	6.59468824362638	6.83261503118798	6.55462085999224	1.15566290278891	5.0463630466529e-05	0.00159475038505847
Merged-chr3-109253037-2	chr3	109252537	109253537	+	659.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87646.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.61236636744924	5.69702249808994	5.72934726263279	5.46847744730927	5.66292711241333	5.7907935780785	-0.0647749873252885	0.83981628722794	0.962784121274377
Merged-chr4-66841673-2	chr4	66841169	66842169	+	764.5	f0_balb.idr|f1_balb.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14118.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.18272834517593	5.24027599628898	5.3200686268264	4.79271674464259	4.96887634133536	5.29398065984963	-0.461241855216046	0.223651254376574	0.618437467582505
Merged-chr3-79128667-2	chr3	79128167	79129167	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16220.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.77680646778221	6.74896221439815	6.60163016587779	7.29384211563495	7.37511891212539	6.94425731963823	0.789452511715177	0.00259707634368118	0.0377491206928923
Merged-chr2-130491801-4	chr2	130491279	130492279	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	41501.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	7.95875636342767	7.78552563988765	7.58131364621655	7.01669065159159	6.9149385527219	7.13253100131804	-1.14016282968399	2.5525956480831e-06	0.000123639720613915
Merged-chr16-3744868-4	chr16	3744359	3745359	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	760.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	8.30837051628378	8.65345854984702	8.28444027881079	8.31095043763318	8.58843977125879	8.2237513694469	-0.0576728209074518	0.808278721229643	0.954683711776353
Merged-chr3-142561722-4	chr3	142561220	142562220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289492, intron 2 of 11)	intron (NM_001289492, intron 2 of 11)	1364.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	7.13272274615108	7.22904672982875	7.43345496131197	7.08757283056679	7.09885527153984	6.94460897706526	-0.322847582452606	0.187154249247166	0.572127218904375
Merged-chr12-80947480-2	chr12	80946980	80947980	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079694, intron 3 of 7)	intron (NM_001079694, intron 3 of 7)	1981.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	3.64456661929696	3.42236317099846	3.47174368908796	3.91212738126336	3.66306745303775	3.60160384423517	0.745354947086902	0.192560284728584	0.579601410786647
Merged-chr7-25245763-2	chr7	25245263	25246263	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 2 of 3)	intron (NM_010155, intron 2 of 3)	4995.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	2.32515964762719	2.28814114892336	2.53167267129022	2.19174757400598	2.11521052431758	2.48359807135457	-0.762695507610709	0.391936814535204	1
Merged-chr11-61564221-3	chr11	61563728	61564728	+	972.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	15459.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	4.31272071335631	4.04756919702283	4.34849621649343	3.70189007979589	3.98985899907751	4.20363942934599	-0.755061011752526	0.146603865889726	0.510786972320255
Merged-chr9-22125803-4	chr9	22125308	22126308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007388)	TTS (NM_007388)	4790.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	6.14013864658897	5.96551117955176	6.42297714700699	5.98358577005415	6.28354466799304	6.56478833856569	0.187506533220622	0.560024788093701	0.865168019835518
Merged-chr5-108636394-4	chr5	108635883	108636883	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	6573.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	3.11268063131964	3.03393374153465	3.39888043841628	3.13418745138196	3.40010457486898	3.36282367559979	0.500247651208636	0.442102995577057	0.803076081297089
Merged-chr2-160085484-2	chr2	160084984	160085984	+	820.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	68831.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.2874790537961	6.24856631104191	6.41290470929062	5.78970681493086	5.72843640131198	6.04077330813992	-0.801099199102999	0.00662276506235604	0.0750363610169556
Merged-chr8-122564704-6	chr8	122564189	122565189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3326.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	8.27010983843246	8.43029255368978	8.20729434343312	8.19490520365941	8.47661689495121	8.12714405518695	-0.0380371624415475	0.865849270917189	0.968641478520565
Merged-chr7-16012786-2	chr7	16012289	16013289	+	850.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13294.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.25373935514544	3.4229710946041	3.38492555476291	3.44405774956213	3.57014715711698	3.51127293583221	0.589416841918922	0.316167616448681	0.710307936103405
Merged-chr14-67272546-4	chr14	67272031	67273031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	37887.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	3.53157611992956	3.46541838713945	3.32132255861646	3.47603794660717	3.29740521112198	3.45073057825059	-0.155527011030418	0.793843271842702	0.950531747588938
Merged-chr4-99947208-6	chr4	99946685	99947685	+	914.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	17734.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	3.95749580369845	4.00125407475045	4.26050127695183	4.01668729258625	4.32112283794121	4.00387406129595	0.173899964518978	0.729087465447841	0.93057292037342
Merged-chr4-141076829-4	chr4	141076355	141077355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	intron (NR_149724, intron 1 of 8)	1502.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	6.51009884706077	6.68232158415656	6.66573040655281	6.66844603186159	6.75589560150405	6.91565675811118	0.251507975363564	0.331917580685095	0.723273485757376
Merged-chr12-85491307-2	chr12	85490807	85491807	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17417.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.86243742210576	5.77060017903498	6.35114647029469	5.83147138230456	5.84416060784162	6.22905673556411	-0.0619291505592714	0.856016990894167	0.966352723941166
Merged-chr5-100675120-4	chr5	100674599	100675599	+	831.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027978)	promoter-TSS (NM_027978)	-843.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.7903638237733	3.83624241422766	3.84947988006219	3.732984004702	3.78625738085306	4.01336894487492	0.0575292560804552	0.912073541479321	0.980248449896169
Merged-chr8-69987980-2	chr8	69987480	69988480	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	8404.0	NM_001286450	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	2.41339449035143	2.38146770561267	2.6413191964815	2.51455024640664	2.46411102738356	2.71426434429756	0.507043383621274	0.527036050763803	1
Merged-chr10-122097372-4	chr10	122096871	122097871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153059)	promoter-TSS (NM_153059)	-269.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	6.43955279774167	6.25427900825609	6.44883935532095	6.41200451242166	6.04786961866038	5.88692389486101	-0.400021882808606	0.18988651136129	0.575972471469458
Merged-chr9-65676025-3	chr9	65675530	65676530	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-518.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.14301830479743	5.15776814706658	4.88661316894455	5.2718736745263	5.39799649599303	4.99139114560535	0.344709278642935	0.362440367565231	0.747881537505714
Merged-chr6-22390989-6	chr6	22390439	22391439	+	900.488892	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-34858.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.07433491115889	5.23957636419779	5.18089032078513	5.09113532843439	5.11383324946738	5.24447013072056	-0.0420914718577312	0.906046144398625	0.978576016264467
Merged-chr1-170555084-4	chr1	170554575	170555575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	2035.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.19739679362936	3.13556437874038	3.23574283450955	2.8817242269567	2.74090028887709	3.02199799270601	-1.5006520059668	0.0330097850227657	0.221506305820507
Merged-chr13-45401920-1	chr13	45401420	45402420	+	585.0	f0_balb.idr	intron (NM_153789, intron 2 of 6)	PB1D9|SINE|Alu	12178.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.45233777222785	2.37710388600355	2.70493006088913	2.30355414693964	2.09691437051947	2.41207264329596	-1.64004449168334	0.0743528975847164	1
Merged-chr8-60982772-3	chr8	60982252	60983252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	CpG	559.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	7.93336012964619	8.18080021213308	7.91220686207501	7.90997933350816	8.26320970516244	7.87961566962753	0.0267641019678318	0.911109072762933	0.980022024205413
Merged-chr5-36712043-4	chr5	36711516	36712516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15995.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	5.78936060983324	5.73375133539144	6.10170516642687	5.87407003418987	6.07751150137679	6.22171917458057	0.32817946925518	0.295495612760536	0.692413375009256
Merged-chr8-72305911-1	chr8	72305411	72306411	+	872.0	f1_balb.idr	Intergenic	RMER19A|LTR|ERVK	-13151.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.52701433740985	4.29766678673211	4.53896297119543	3.55147120975575	3.48679803589935	3.85171062955635	-2.67523785561445	1.81998229484826e-06	9.1392327573768e-05
Merged-chr17-83708465-2	chr17	83707965	83708965	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001171053, exon 2 of 14)	exon (NM_001171053, exon 2 of 14)	2302.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.65617273936898	7.14257935750487	6.71397798791695	6.93022070934527	7.4979750770653	7.28662912553571	0.604959300532989	0.0412276396293138	0.253512865335231
Merged-chr10-100160000-4	chr10	100159489	100160489	+	814.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144168.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	5.73160370136373	5.93645125683569	5.76055398973535	5.78885495651101	6.17797744998418	5.89869159885003	0.280917054919851	0.375254822800099	0.758624025253248
Merged-chr17-45758120-4	chr17	45757624	45758624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	URR1A|DNA|hAT-Charlie	23618.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	6.5258447901792	6.68687030351806	6.56674290732357	5.97899122264758	5.71029870864868	5.84273043398081	-1.26713297481061	9.49852294780987e-06	0.000383038304213902
Merged-chr10-79995177-2	chr10	79994677	79995677	+	907.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007725, exon 7 of 7)	3' UTR (NM_007725, exon 7 of 7)	-2431.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	3.53405554406729	3.19676283880502	3.25854468980128	3.43909612679495	3.40852035387768	3.70816245975972	0.664778761487178	0.285263561503406	0.682814628441307
Merged-chr8-3631722-4	chr8	3631211	3632211	+	977.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357168, intron 1 of 18)	intron (NM_001357168, intron 1 of 18)	602.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	7.52076784636077	7.92979169828266	7.36516219442801	7.59225115793292	7.83165624943239	7.30486848354301	-0.0475788612401582	0.864797691955016	0.968414296405945
Merged-chr11-118354797-2	chr11	118354297	118355297	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	614.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.87965583674617	6.28348555915543	6.23972439334622	5.70453522001844	5.90289795213994	5.81141760853098	-0.577802052414235	0.0659424831537923	0.335182781811897
Merged-chr6-30354945-4	chr6	30354463	30355463	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36057.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	3.19791063008891	3.14066121125982	3.32499621606534	3.19089190312958	2.85381560552065	3.1737869752238	-0.62640014531844	0.353027639465619	0.74042924884689
Merged-chr4-94601597-2	chr4	94601097	94602097	+	729.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172695, intron 1 of 13)	B2_Mm2|SINE|B2	1650.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	3.36896523560502	3.33323113623092	3.22864343688436	3.14230143508658	3.40544247139925	3.35791132852153	-0.0220324861416014	0.971735913832327	0.993783614343214
Merged-chr3-146118229-4	chr3	146117732	146118732	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3559.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	2.71546562304956	2.67963799679368	2.85772132884166	2.87495953562433	2.82818076536881	3.15181226776354	1.05139630951438	0.14818140033774	0.513680704882835
Merged-chr1-151287725-4	chr1	151287226	151288226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56760.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.35856725423369	5.20761208781895	5.29047497102814	5.25155719749935	5.4583416105925	5.22421804983328	0.0770254255289474	0.825085604600968	0.958703592850782
Merged-chr3-88465277-4	chr3	88464783	88465783	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4101.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	3.17387606468455	3.14784744180566	3.31098343022551	3.18604054074694	2.91510172080709	3.43407465898103	-0.0906403513991643	0.893045643128385	0.975200520944414
Merged-chr11-72795688-4	chr11	72795179	72796179	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	160.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	7.33479204228767	7.47849409110417	7.32102494429243	7.56975487229518	7.6724601440303	7.19765287908566	0.181086905041873	0.469477350633988	0.818977178978635
Merged-chr2-163760766-3	chr2	163760220	163761220	+	875.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10481.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.21493496564883	6.42134590807745	6.29921811541841	5.68815667681034	5.69359087416842	5.80746465500351	-1.02424787075754	0.000475348090655648	0.0101002972235126
Merged-chr8-36866912-3	chr8	36866396	36867396	+	829.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	L3|LINE|CR1	85546.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.67596583113646	4.54508967864686	4.36230277310508	4.52627366690781	4.75209119933997	5.0771650581879	0.599965214109958	0.176361534990904	0.55655518654087
Merged-chr19-5567605-4	chr19	5567159	5568159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033448)	promoter-TSS (NM_001033448)	-365.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	7.76815663649385	7.58496932026284	7.65666406235892	7.66796813649904	7.50867939245286	7.42641277725112	-0.191489349044468	0.400394632691135	0.77659758967282
Merged-chr8-95806969-4	chr8	95806377	95807377	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015574)	promoter-TSS (NR_015574)	47.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	8.02605277550846	8.42544964854337	8.29460921932345	8.06083680964557	7.98911498352655	8.20837004188227	-0.245122020848071	0.28538730596714	0.682917350182106
Merged-chr4-53150709-4	chr4	53150245	53151245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9150.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.67466880774062	7.88453738123463	7.45915856200861	7.66888980945965	7.93480006465304	7.42862560172589	0.0178385308070776	0.945519828843978	0.987909250703712
Merged-chr10-84335656-4	chr10	84335178	84336178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104793.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.15788573988717	6.33877833265159	6.35554994978172	5.90379570494833	6.060092136925	5.85089247145388	-0.568824967153827	0.0516688014745277	0.290000514879764
Merged-chr11-120351135-3	chr11	120350627	120351627	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_038126)	TTS (NR_038126)	2449.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	6.15539063458738	6.1314677511765	6.6788872780088	6.09585152497472	6.29238400070565	6.53627509078599	-0.0341092060483416	0.915298236215607	0.980959026698783
Merged-chr18-32834192-3	chr18	32833681	32834681	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 1 of 4)	intron (NR_045381, intron 1 of 4)	-3044.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	3.98424980888936	4.10991645869252	3.90491393117125	3.33594249511266	3.38277257540707	3.55394254596218	-2.08594179974898	0.000328796541564195	0.00751813757363933
Merged-chr15-80977876-4	chr15	80977414	80978414	+	988.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	CpG	149.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	5.67529320318944	5.6354045582432	5.37735446413386	5.68860240338126	5.30304246310016	5.44138707320987	-0.176705563688557	0.609222009993927	0.885062773702803
Merged-chr2-121457104-4	chr2	121456609	121457609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026318)	promoter-TSS (NM_026318)	21.0	NM_026318	67693.0	Mm.330525	NM_026318	ENSMUSG00000027245	Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding	5.78373808012228	5.97291572245927	5.81830479540491	5.85970736418184	5.83051714999414	5.48543798225797	-0.207938672003816	0.516716534744772	0.844296391152365
Merged-chr4-135948389-4	chr4	135947864	135948864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	958.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	6.14830970578825	6.20801475805757	6.01033070065176	5.99556170774101	6.02418171203553	5.62216878328946	-0.385127253606123	0.213644566261734	0.606786261185113
Merged-chr10-59261755-4	chr10	59261223	59262223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	39801.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.00681042866672	5.68035555118042	5.8798254097171	6.42043196737186	6.19241902602193	6.31202223991844	0.764567484679364	0.0107017586920307	0.105406242571791
Merged-chr12-98737528-3	chr12	98736982	98737982	+	731.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146199)	promoter-TSS (NM_001146199)	-77.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	4.07035236793589	3.98461772959008	3.91042383984841	3.90891660477955	3.34922350152532	3.48370131440816	-1.27039287576071	0.0331476484541702	0.222078216430533
Merged-chr11-94327966-4	chr11	94327482	94328482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146024)	promoter-TSS (NM_146024)	-19.0	NM_027799	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	7.92923336378536	8.01971408212412	7.82697562111446	7.87334177236645	7.78757448890985	7.62359712266532	-0.231085728726568	0.297312849723163	0.693935697048106
Merged-chr7-80230589-6	chr7	80230117	80231117	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291275, intron 2 of 6)	intron (NM_001291275, intron 2 of 6)	2188.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	4.8622462596621	4.43722055533667	4.89388833132333	4.88549294027522	4.77826531338464	4.81282989211008	0.193268876333597	0.643874648488103	0.899990653857957
Merged-chr3-59262939-4	chr3	59262441	59263441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	44.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	7.55411605702079	7.95940093826917	7.27823854439366	7.55728523020665	7.94841663127534	7.35961202679183	0.0253154958469193	0.931728727586699	0.984929477721491
Merged-chr4-126232407-2	chr4	126231907	126232907	+	569.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144941, exon 17 of 17)	3' UTR (NM_144941, exon 17 of 17)	23912.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	2.93303942458472	2.70974017728582	3.36972729590047	2.9493021285592	2.82850145698068	3.2344623542066	-0.0782588595280418	0.918103866281948	0.981747877135909
Merged-chr5-122145045-2	chr5	122144545	122145545	+	753.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6983.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	5.0745512921855	5.18481631028712	5.55890810434105	5.66218395663546	5.69722697964933	5.99847823643372	0.972666409479443	0.00610069999701213	0.0706312850078454
Merged-chr9-116173899-4	chr9	116173401	116174401	+	822.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	1462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.36296229829966	7.80722017743627	7.2046668903547	6.82183964244005	6.96472473256964	6.80273091267431	-0.935029183111372	0.000679726660632195	0.0133866736042328
Merged-chr9-108335902-2	chr9	108335402	108336402	+	600.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 5 of 5)	B1_Mur4|SINE|Alu	-3178.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	3.52758481505279	3.73160428493808	4.13985889822285	3.40701632574948	3.80322020627555	3.85392744784822	-0.373174942382647	0.539450774707014	0.855912515718423
Merged-chr10-83330607-2	chr10	83330107	83331107	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177388, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	7210.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	3.64580522726403	3.73265119792275	3.80872627222527	3.80371506340394	3.80671412035143	3.87781234748117	0.329123177369523	0.529206161714404	0.850847288056475
Merged-chr9-57523401-2	chr9	57522901	57523901	+	722.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2169.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.78439468191299	5.81624515353929	6.10483428101813	6.67646129624672	6.65206994401386	6.54933597135736	1.2228950778729	1.4558423301986e-05	0.000554152463912008
Merged-chr6-32538330-2	chr6	32537830	32538830	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	27189.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.22498750486063	3.2689578855013	3.24614699123714	3.13656292403823	3.02705927189039	3.20374407808221	-0.551061667721444	0.385286227415915	0.766341662207074
Merged-chr5-31201208-4	chr5	31200710	31201710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177901, intron 1 of 2)	intron (NM_001177901, intron 1 of 2)	832.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	8.51150845379681	8.78089331406039	8.20776875389709	8.59293797142124	9.06843526389277	8.52676207421187	0.319611344265468	0.230526651258219	0.626341302534829
Merged-chr5-16538207-4	chr5	16537723	16538723	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15272.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.00852206126635	3.72910278995826	3.83319053481035	3.83952975459578	3.97724480167926	3.90304123518781	0.145214555413536	0.77946616073755	0.94576636922948
Merged-chr14-63127379-3	chr14	63126974	63127974	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	5012.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.60466008213255	8.14993135452143	7.71145411759211	8.1053179766076	8.11786834107676	7.59497856226281	0.168707942565072	0.543285270672969	0.857550240744675
Merged-chr2-143942814-3	chr2	143942321	143943321	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019771, exon 4 of 4)	3' UTR (NM_019771, exon 4 of 4)	27490.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	4.87399053144143	4.8948431210912	4.97790674893696	4.97745001420409	4.62310531421192	4.82492692989738	-0.229299688893766	0.562143699306671	0.86560636450104
Merged-chr15-9132762-4	chr15	9132244	9133244	+	951.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7710.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.80695276181867	6.18637635908513	6.00374850108466	6.03895256040043	6.1862352933313	5.99508656295669	0.122760363476139	0.686964886332809	0.916965854132552
Merged-chr9-105495911-2	chr9	105495405	105496405	+	705.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-772.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	6.44084228465725	6.5873395842824	6.33410540497834	6.6991630719284	7.02596332391122	6.49247905858946	0.486894864139827	0.0921051877466502	0.404256169533878
Merged-chr8-26978086-4	chr8	26977587	26978587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101502, intron 1 of 1)	CpG	751.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	7.41390623229408	7.55215047912395	7.69062227806433	7.52026237823943	7.62722383531556	7.95229431075899	0.224486622703708	0.361796526974596	0.747478680384173
Merged-chr19-29436913-2	chr19	29436413	29437413	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	25994.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	2.47517757577655	2.4704748386037	2.29292895219987	2.67364207626955	2.47952066880111	2.63581828470859	1.06137662439109	0.202085915342527	1
Merged-chr17-17910315-4	chr17	17909787	17910787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22463.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	6.87330964851245	7.26050107563105	7.11642099984239	7.83371753850262	7.94117412935459	7.84700329068271	1.14474153813342	1.98877426227836e-06	9.90909753387172e-05
Merged-chr10-43856120-2	chr10	43855620	43856620	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	30213.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	4.41723941732969	4.90744277461291	4.57994290587483	4.74765675199319	4.93964726360934	4.64764718786867	0.30773414741411	0.480493512388348	0.824543506620807
Merged-chr7-84679464-4	chr7	84678973	84679973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-77.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	4.54196000950462	4.75373448498761	4.75356723341117	4.97369681627041	5.10133802240273	5.00401249187768	0.776562959678991	0.045958346139093	0.270924694689455
Merged-chr19-4299758-4	chr19	4299275	4300275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	6447.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	7.13069708315391	7.38250976351252	7.48858708670517	7.25891045286237	7.43016025814923	7.54555210233757	0.112961786621484	0.647304698769604	0.901302387510186
Merged-chr14-8111756-4	chr14	8111259	8112259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13548.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	6.35505641124021	6.26572483539391	5.64720696126802	6.69068208793821	6.50100653230265	6.09572748082629	0.526174189609516	0.134023582730689	0.489430895003259
Merged-chr11-100609054-4	chr11	100608542	100609542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	MTD|LTR|ERVL-MaLR	11126.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	7.36986360075293	7.41617144109194	7.22984878628991	7.6743649783936	7.71348688923032	7.41437318809933	0.393024320186457	0.0950942522486722	0.411148363215922
Merged-chr14-20827024-2	chr14	20826524	20827524	+	777.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9638.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.99239804573993	6.66902128706926	6.54274465137384	7.27843229316108	7.44635556656388	7.16307778585619	0.832213249520755	0.00194136102344811	0.030239005623188
Merged-chr7-110840975-2	chr7	110840475	110841475	+	773.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	intron (NM_025999, intron 1 of 5)	3406.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	6.83867477564672	6.60621261299437	6.68159107589199	7.0044960833954	7.30862346212112	6.75711723067882	0.526851786044019	0.0580242969541763	0.311228369816483
Merged-chr12-91738563-4	chr12	91738055	91739055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	47881.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.25530851585852	7.10515580042115	6.95258010151945	7.26497224871712	7.30175935536281	6.93798867263533	0.106592770172266	0.678085395272209	0.913348920595872
Merged-chr17-70828149-2	chr17	70827649	70828649	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	18628.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.14079845131834	3.21841784978632	3.16139006788236	3.06631138601138	3.07686229351655	3.23269590038578	-0.226051777021652	0.723588616656902	0.929080851011554
Merged-chr8-42194081-3	chr8	42193607	42194607	+	907.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	366840.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	2.47721671518148	2.67434213697909	2.68805404252277	2.29536258100387	2.33512711475991	2.57878243891677	-1.31921808782106	0.118331080194719	1
Merged-chr12-40585090-4	chr12	40584564	40585564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139011.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	7.94303005561599	7.91966538048512	7.62436804693942	7.71968301500989	8.13341903548814	7.69989256381666	0.0470871510550334	0.851672927869521	0.96531854415899
Merged-chr11-4596832-4	chr11	4596320	4597320	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2005.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	5.19868459435313	5.11821276423345	5.06662469371336	5.24035543661271	5.21868759289677	5.32735573119197	0.258214034296263	0.46190344179298	0.815107818354545
Merged-chr2-127113994-3	chr2	127113515	127114515	+	913.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144818, intron 12 of 17)	intron (NM_144818, intron 12 of 17)	19939.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	4.24491132087037	4.21549212732703	4.00537783937038	4.0696959791519	4.02386329601651	4.17106527864618	-0.235536398520858	0.623682031665491	0.891552110895095
Merged-chr9-99119957-3	chr9	99119454	99120454	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	20257.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.76049648587839	3.77117205745437	3.80135705055541	4.19785535579794	4.06070827137474	3.87259053797521	0.85989747625265	0.0931434075842162	0.406562272750191
Merged-chr17-26537762-4	chr17	26537250	26538250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23762.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	8.28095696871138	8.20965748673579	7.91686550097061	7.95301332200121	8.24054471115962	7.86625720951169	-0.160506511207845	0.503491215967929	0.837052889076112
Merged-chr4-128668117-3	chr4	128667620	128668620	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	13418.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.77281733687876	6.70690875043353	6.6101055422699	6.50773775993359	6.53496886445758	6.71753248946151	-0.188477807011856	0.467185377418191	0.817822583977718
Merged-chr12-30912226-4	chr12	30911735	30912735	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021330)	promoter-TSS (NM_021330)	566.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	3.6257784431093	3.60652890476426	3.66902441500534	3.7052902152135	3.48158944417832	3.4660120276953	-0.268420753666588	0.633615323806219	0.896059441151508
Merged-chr11-104367953-4	chr11	104367442	104368442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	B1_Mm|SINE|Alu	74349.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	6.83587598881896	6.71762951453779	6.7601453307284	6.81218223482853	6.65905634361553	6.43944695224259	-0.187524871447965	0.477616669183571	0.823283224424647
Merged-chr4-155943167-2	chr4	155942678	155943678	+	772.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-635.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	5.12140640172673	5.06157007392459	5.29736396914219	5.38767925439091	5.26753046609778	5.39050299541125	0.385383391211642	0.270455638004206	0.667405147944625
Merged-chr11-76477784-1	chr11	76477284	76478284	+	633.0	f1_balb.idr	intron (NM_001346670, intron 3 of 21)	intron (NM_001346670, intron 3 of 21)	-9319.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.63986513704529	4.74497918907385	4.80107680332468	4.02062614210553	3.89971700858871	4.31497468924076	-1.74831076389208	0.000197828668675809	0.00497008691521036
Merged-chr11-120698169-2	chr11	120697669	120698669	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 7 of 15)	intron (NM_026877, intron 7 of 15)	15598.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	2.50223044472183	2.28041641169501	2.71795704222733	2.52976706117439	2.47793511056885	2.73181903838724	0.41929191718204	0.615087437632406	1
Merged-chr11-51938897-4	chr11	51938410	51939410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-28721.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.43067351465419	6.1413981222323	6.30628809548707	6.29605324045504	6.27113894102665	6.5955291457849	0.146561002373385	0.611812658630103	0.886342611187799
Merged-chr1-131911449-1	chr1	131910949	131911949	+	1000.0	f0_c57.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	991.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	8.21588444668432	8.12917255021105	7.97400088039217	8.27342876482413	8.4179298352755	7.95936100990668	0.175374553422157	0.454656651450632	0.810521063822265
Merged-chr13-37994208-4	chr13	37993737	37994737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025965)	promoter-TSS (NM_025965)	-29.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	7.83253316142926	7.70461696808907	7.53777583914398	7.82071315284345	7.44681354912818	7.2981148911038	-0.22566896179876	0.379812421673693	0.762097533655971
Merged-chr5-135744272-4	chr5	135743771	135744771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172541)	promoter-TSS (NM_172541)	-99.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	6.09323905404555	6.06653761477158	5.84505200728524	6.15705611388542	6.32127040022536	5.88129801555475	0.224839101265005	0.465452662971663	0.817020164214671
Merged-chr12-4488565-4	chr12	4488055	4489055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11373.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	4.94422850638329	4.6092684815566	4.91675794683556	4.52011285791735	4.199008815648	4.69257370050355	-0.852632496028712	0.0566976210383768	0.306941812059939
Merged-chr5-34513022-2	chr5	34512522	34513522	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139064, intron 1 of 5)	intron (NM_139064, intron 1 of 5)	957.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	5.41666655922791	5.24230952900465	4.85435625393295	5.46400947335094	5.03350499520824	4.96285401171262	-0.0532928897886698	0.896364978706366	0.975806926657291
Merged-chr12-26426484-3	chr12	26425969	26426969	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11207.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	4.26404720885467	4.38903655840093	4.51655860158069	3.72256739914454	3.40985388078724	3.77146325089949	-2.44039459986181	1.2572058939851e-05	0.000486796015307108
Merged-chr11-116131135-4	chr11	116130641	116131641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-13.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	8.74360903751407	9.14453217586042	8.56789470332415	8.47279137364999	8.93457443568049	8.7085062361112	-0.171662603606214	0.501637389085638	0.835833270717604
Merged-chr19-40831990-2	chr19	40831490	40832490	+	833.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172839, exon 2 of 6)	5' UTR (NM_172839, exon 2 of 6)	711.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	4.93330677171579	4.70544268609613	4.75607016099986	5.10524929582403	4.60307644247986	4.65907219485366	0.0147097914339862	0.972382105420698	0.993868590220018
Merged-chr19-3563349-2	chr19	3562849	3563849	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	intron (NM_001360430, intron 1 of 22)	12400.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	4.71554296673896	4.6853007534242	5.06835820880496	4.48784582310792	4.53501135618494	4.68225796701085	-0.606843620062651	0.14986645173946	0.516435278990118
Merged-chr3-51338413-6	chr3	51337918	51338918	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	L1MB8|LINE|L1	2226.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	6.52244381697573	6.43363785559191	6.42058340655387	6.26852769159968	6.54355265637608	6.40532119774292	-0.073449347515237	0.787168576962863	0.948718549121005
Merged-chr14-67934225-4	chr14	67933726	67934726	+	850.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-654.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	5.94319276943802	5.98324974093583	6.16871549241224	5.53523051813515	5.48608245068779	6.00274239704123	-0.624244535484947	0.0598558671551925	0.316701449137615
Merged-chr14-20732693-2	chr14	20732193	20733193	+	916.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	1869.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	5.98234873618541	5.9596954623393	6.23408211770103	6.50189131292469	6.74767709042241	6.44823398363923	0.870699722160778	0.00229663524093388	0.0343764031530179
Merged-chr7-102396525-2	chr7	102396025	102397025	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 3 of 11)	RSINE1|SINE|B4	-45170.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	4.45505883175445	4.67606620523965	4.24348032413737	4.38499882054379	4.47174154158671	4.57686665973426	-0.0120576422056862	0.978629179970694	0.995160277495735
Merged-chr10-126978588-4	chr10	126978100	126979100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113470)	promoter-TSS (NM_001113470)	-117.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	5.49529846967594	5.47870523925112	5.76107939219717	5.63818813423096	5.50303255955897	5.86931609802467	0.172807870813081	0.605617577966085	0.883581756351046
Merged-chr2-166804682-2	chr2	166804182	166805182	+	755.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-899.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	3.10044277366938	3.05177506437495	3.18477122217634	2.99484000344785	3.42604906622294	3.31235428022882	0.630599862760195	0.341624754699358	0.730935106878357
Merged-chr18-82857060-4	chr18	82856565	82857565	+	981.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_125720, intron 2 of 2)	MIRc|SINE|MIR	1168.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.43822420824407	5.23538041522894	5.08402914554227	5.65761231930269	5.47754660222232	5.25689046347431	0.411944273385858	0.252958505042273	0.650358193791754
Merged-chr2-132597414-4	chr2	132596913	132597913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033469)	promoter-TSS (NR_033469)	-783.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	8.06820703097977	8.15140134156678	7.77317023876548	7.45353695339471	7.90226402269151	7.47192696708629	-0.539254384193006	0.0368458997914932	0.236527822083827
Merged-chr15-101147303-2	chr15	101146830	101147830	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18808.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	3.16180435717398	3.2258237210963	3.69860658231413	3.10511159110524	3.31747399541858	3.07636626288506	-0.806380803888678	0.239130485057207	0.635872578534862
Merged-chr10-111422321-3	chr10	111421785	111422785	+	760.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-50942.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	3.33269311612749	3.22051459461669	3.54950800132954	3.43720281976332	3.39222881268379	3.29238052491189	0.0414815198130921	0.945794967352983	0.98796006280508
Merged-chr2-128806782-4	chr2	128806290	128807290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	7.08888333467329	6.90518435084297	7.09036647502841	6.72722962223537	7.01815398031611	7.02027871489816	-0.15111932831442	0.552961335306658	0.861983853430146
Merged-chr13-30986141-7	chr13	30985597	30986597	+	797.892883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12050.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	6.48536317645728	6.82914370979742	6.62463911374509	6.78183031252572	6.96755597030496	6.632780994756	0.23973080639203	0.380811272299816	0.762812239912963
Merged-chr13-60677514-2	chr13	60677014	60678014	+	665.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	75303.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.27370349558479	4.33771265284771	4.65328972378633	3.95540383775241	3.96635689759155	4.19934480200346	-1.06892141979008	0.0277813249067412	0.198918206939172
Merged-chr8-66450921-2	chr8	66450421	66451421	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	35609.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	3.18200285135754	3.41612708581571	3.56481599486777	3.32977341509216	3.19042817123733	3.63392178380278	-0.00842818411447416	0.98944435477371	0.997597007948949
Merged-chr4-129346713-4	chr4	129346176	129347176	+	828.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 6 of 6)	intron (NM_025970, intron 6 of 6)	10650.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	5.1711587648584	5.03603572858536	4.83572051357164	4.99088177589543	5.24903609454663	5.05201733333681	0.1669435715093	0.661019177522766	0.906246109292722
Merged-chr2-148876141-2	chr2	148875641	148876641	+	821.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-629.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	5.39340715004988	5.3338028459615	5.75560608180932	5.46022001049413	5.52246874697299	5.64217455025742	0.0870325635838004	0.799681175239489	0.952265144270204
Merged-chr18-84589113-4	chr18	84588613	84589613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	CpG	391.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	6.51073328818053	6.93327506703571	6.97406504453727	6.79351157723588	6.35183090264962	6.79761151989636	-0.254862784583018	0.393780275939775	0.771940960060713
Merged-chr14-31184580-2	chr14	31184080	31185080	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 13 of 13)	intron (NM_001347583, intron 13 of 13)	-15939.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.56621172439236	6.64263705269495	7.15952181705873	6.59408706587176	6.72902269870623	6.83848497740007	-0.132485139984301	0.651342423978637	0.902785150139012
Merged-chr15-64174688-4	chr15	64174188	64175188	+	779.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-114240.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.46245519044159	2.35706189770606	2.59974895603019	2.36896819716891	2.22140140140756	2.42425268062223	-0.883571588848483	0.293308887867441	1
Merged-chr2-102982978-4	chr2	102982481	102983481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81316.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.63195824763093	3.78821311227353	4.03392466730044	3.77835086483465	3.90302541516581	4.00492075497805	-0.896748452549297	0.116419223268731	0.455577804265088
Merged-chr5-140536808-3	chr5	140536334	140537334	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28233.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	1.85939604263975	1.89926061650623	2.05922506671068	1.84735011377919	1.70137637623205	1.79675428027347	-1.4450949299067	0.160347800818739	1
Merged-chr13-98880433-2	chr13	98879933	98880933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 4 of 23)	intron (NM_178716, intron 4 of 23)	10609.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	4.38508940718355	4.526547799251	4.46620929836775	4.5089987380704	4.70456327667926	4.57545017273837	0.352599988314038	0.405366654576476	0.780134157220244
Merged-chr6-66535272-4	chr6	66534774	66535774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	53.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	6.59310761889612	6.70869714493081	6.52269098803948	6.84682664607322	6.87612706694436	6.81248733907565	0.362570498661346	0.150493362607087	0.517334494681425
Merged-chr2-131223447-2	chr2	131222947	131223947	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10616.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	4.16248886029964	3.97956827914557	3.88405562633153	4.03749874517916	4.17624974403173	3.90195275569037	0.0942243606206531	0.852095035865649	0.96531854415899
Merged-chr1-155098947-5	chr1	155098468	155099468	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010500, exon 1 of 1)	exon (NM_010500, exon 1 of 1)	668.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	8.81306468974077	8.79832650289835	8.67479939633363	8.5178597808695	8.58142790847814	8.63781301883458	-0.258404092685113	0.191294331120851	0.577883022436918
Merged-chr4-63543747-2	chr4	63543247	63544247	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	4.03844367087971	4.15133925546442	4.50469702782111	4.2317458511605	4.110491879075	4.60696041362108	0.231136891173788	0.644123289141224	0.900067122451665
Merged-chr4-45448481-2	chr4	45447968	45448968	+	1000.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001033306, intron 3 of 5)	URR1B|DNA|hAT-Charlie	-39702.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	3.28556485488054	3.20012140520151	3.27254953822109	4.3051992046713	4.02430566464809	4.29032263345543	3.62641432812023	7.48626894603072e-08	5.4930993515108e-06
Merged-chr15-78815927-4	chr15	78815474	78816474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12932.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	5.2092771697755	5.14114500096983	5.34917733965307	5.01131040925398	5.28581417756082	5.12726822885112	-0.155090419304311	0.668457429328808	0.909204788456481
Merged-chr11-20542993-4	chr11	20542497	20543497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021372)	promoter-TSS (NM_021372)	-256.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	7.06243967877199	7.09526073171468	7.00882422770566	7.12671965982157	7.0701634813741	7.02632326744856	0.027334186550155	0.90760839031425	0.978965119317186
Merged-chr4-155573577-2	chr4	155573077	155574077	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	PB1D10|SINE|Alu	9762.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.08061888802456	2.87666851588313	2.9093660215942	3.13065598244026	3.08743370290502	3.33103829177692	0.990599627909407	0.144751999872111	0.507621952799257
Merged-chr18-12235291-2	chr18	12234745	12235745	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	1141.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	3.84394535505791	3.99410975677985	4.22804081374173	4.56482177396449	4.49024855889636	4.2968129126275	1.20632988931378	0.0118510274998674	0.11318873923427
Merged-chr15-27960635-3	chr15	27960155	27961155	+	963.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	ORR1D2|LTR|ERVL-MaLR	65193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	2.84403704973853	3.13884364511847	3.31854921916438	3.04940950820714	2.91361988821418	3.17321875315088	-0.287233834825554	0.681269399760008	0.914646791797453
Merged-chr3-27939058-4	chr3	27938567	27939567	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164056, intron 1 of 26)	CpG	387.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.90278828689532	3.94447232319359	4.37301986575113	3.93367753891572	3.69807265234326	3.96680352658095	-0.650803655776898	0.223006028500503	0.617835308211147
Merged-chr5-64211497-4	chr5	64210986	64211986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RCHARR1|DNA|hAT-Charlie	-18871.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.79037118474485	8.10191486960349	7.75069187158584	7.78064599601742	8.04349184904077	7.72686467442931	-0.0452206643869963	0.851620538267267	0.965314553418056
Merged-chr2-167001771-2	chr2	167001271	167002271	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-5472.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	3.21652737041997	3.07607609919257	3.02604677662983	3.39026839642716	3.16857805145719	3.3923813300418	0.853588977583841	0.187209578728576	0.572128204607461
Merged-chr5-147911312-4	chr5	147910804	147911804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16489.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	5.07431923272553	5.22826966673339	5.21046783547341	5.92735773544618	6.06303496595046	5.67601339030438	1.39501856453936	3.23105089400566e-05	0.00109644895101314
Merged-chr9-53536813-4	chr9	53536327	53537327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007499)	promoter-TSS (NM_007499)	-156.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	6.75968759257762	6.72198810196377	6.58693690504226	6.90668663472832	6.90023022631043	6.91250164382261	0.324462346262099	0.190883726704414	0.577428967011753
Merged-chr10-78465734-4	chr10	78465234	78466234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-786.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	9.0751200805045	9.22034515450154	8.84249270732235	8.86098920604192	9.19940079779861	8.83970448126838	-0.105365026373176	0.644678961121444	0.900287351502017
Merged-chr5-38500093-3	chr5	38499600	38500600	+	768.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 1 of 10)	RMER19C|LTR|ERVK	2052.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	2.74553878785254	2.91638275985868	2.6218427070868	2.94398784102091	3.13000337672317	2.95862734776943	1.19263077209934	0.114672920066916	0.452186398382538
Merged-chr16-85071960-4	chr16	85071452	85072452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	99741.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	7.04316809084506	7.18138570958503	6.70270714483681	6.86534501474285	7.22871604927325	7.01843890450692	0.0761085832900275	0.781567939869735	0.946246819163951
Merged-chr1-91092144-1	chr1	91091644	91092644	+	758.333313	f0_balb.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38700.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.50247907300715	4.37470436096058	4.32135627998962	4.90587175476661	4.69882659568874	4.29340796721211	0.636349646020265	0.164845941513462	0.539552399553622
Merged-chr19-10182907-4	chr19	10182441	10183441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146094)	promoter-TSS (NM_146094)	53.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	5.58461502288021	5.53809761030163	5.94860731450649	5.0854696243148	4.97581616127238	5.20176315640536	-1.20355114566878	0.000789767543074114	0.0150343119936195
Merged-chr5-134492016-3	chr5	134491471	134492471	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 14 of 15)	intron (NM_001039162, intron 14 of 15)	-35255.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	2.36173102900192	2.29366887690042	2.58802886563133	2.46222772892934	2.38478522392029	2.66126687525739	0.53748473070702	0.514893147098541	1
Merged-chr12-100925793-4	chr12	100925281	100926281	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17583.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	6.75380133673574	6.9478320672576	6.44324520313238	6.22162758627846	6.38466454677344	6.17237696420237	-0.759553413016802	0.00874672457455793	0.0917777375031294
Merged-chr7-16102033-2	chr7	16101468	16102468	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	3388.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	3.44985762244141	3.22483457827104	3.37378501101991	3.50803027577916	3.44530499019128	3.50045711869311	0.500533444791722	0.398027779029336	0.774770052576157
Merged-chr19-9930460-4	chr19	9929969	9930969	+	791.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-30936.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.3411296282043	7.73148581357811	7.08154309077138	7.06824766439612	7.48354927943179	6.89271189952324	-0.351610140425641	0.245737383528126	0.642821080898342
Merged-chr12-84181479-2	chr12	84180979	84181979	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	12536.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.16384145967992	3.86816560663804	4.15262860529288	4.43994312810923	4.06461530214024	4.47791534440412	0.738702613869693	0.138255212928859	0.496960021384664
Merged-chr14-55148665-4	chr14	55148169	55149169	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31734.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	4.41035477793249	4.36255123300995	4.69871558339509	4.41059562139855	4.23794478328567	4.65326504971303	-0.141974056118579	0.75586345804986	0.93947191195012
Merged-chr4-46555896-4	chr4	46555431	46556431	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	10509.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	6.99857434259905	6.83487134577996	7.01351270379978	6.66209880210391	6.60432588471973	6.48447774791415	-0.559821966616058	0.0280336783773229	0.200152245410782
Merged-chr14-54382402-3	chr14	54381902	54382902	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	MLTR14|LTR|ERV1	21561.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	8.01247927275688	8.10867140946507	7.73282446399571	7.48642348906011	7.46237492262965	6.79007950683613	-0.966968254354619	0.000819013028944724	0.0154181982154825
Merged-chr10-96171767-3	chr10	96171274	96172274	+	825.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-54433.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.66028338692175	3.65256478432089	3.86457667860041	3.81987981874688	3.73501370816201	4.39859954099623	0.879638286512245	0.122110089515325	0.467427117500877
Merged-chr12-17773899-4	chr12	17773421	17774421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	83112.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.71922673641999	6.00391120927726	5.93517590338645	6.20896911916833	6.26789444502026	6.42472793428118	0.696690036598766	0.0183668159385477	0.152887757164333
Merged-chr3-14579793-3	chr3	14579257	14580257	+	813.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007892, intron 1 of 7)	intron (NM_007892, intron 1 of 7)	1086.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	5.30326423536015	5.40405442199405	5.25940002676167	4.63336839818241	4.97959612913398	5.19697997574999	-0.782114425236384	0.043562847346196	0.262365893187442
Merged-chr18-32711816-2	chr18	32711316	32712316	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-103567.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	2.60693572257495	2.5677931058244	2.53874109768835	2.6461075089576	2.65164771926882	2.73821427192306	0.58966782842186	0.434238621096537	1
Merged-chr12-55459115-3	chr12	55458633	55459633	+	810.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33514.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.54467860609113	4.65921143067536	4.54869841155058	4.6547369807404	4.3282127048945	4.80762381672778	0.0293893755490796	0.946536993640151	0.988007649185823
Merged-chr11-21242394-1	chr11	21241894	21242894	+	552.0	f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	3362.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.47980042903294	4.88938768099314	4.85921555329502	5.22067235092682	5.24596940252826	5.10406387185464	0.95712291999771	0.0153999989174358	0.135112095099325
Merged-chr10-13304050-4	chr10	13303562	13304562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20227.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	6.04576327936535	5.74440477522118	5.71783601731623	6.06872499061447	5.73598897514491	5.45266851042477	-0.115215755250285	0.739819776825723	0.93427891606599
Merged-chr19-10698136-3	chr19	10697597	10698597	+	916.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2671.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	4.39761777586182	4.69154656209762	4.74104178295822	4.83393396622901	4.69193906577421	5.2618492064009	0.742470073034557	0.089828425368493	0.398339566087272
Merged-chr14-21824086-1	chr14	21823586	21824586	+	575.0	f1_balb.idr	Intergenic	RMER20B|LTR|ERVK	-7475.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	4.24650039748737	4.42978756725052	4.504609830559	3.87150836864138	4.23721945621321	4.04041028152147	-0.895205864320104	0.0700041915851451	0.346414352868369
Merged-chr9-40766214-2	chr9	40765787	40766787	+	793.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	RSINE1|SINE|B4	-34986.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.87439749901799	5.63492108123986	5.44264636778498	5.39225991913347	5.66411500164577	5.50635776062119	-0.261592316330972	0.443947726434526	0.803884349333946
Merged-chr16-20693679-3	chr16	20693182	20694182	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1375.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	6.28739253910587	6.0767962193805	5.83095492074234	6.19329720243809	6.13744627332073	5.99434791077676	0.0434500573537501	0.886699027451532	0.973794308941933
Merged-chr1-169969316-4	chr1	169968818	169969818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040438)	promoter-TSS (NR_040438)	-91.0	NR_040438	67303.0	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	4.61795630236327	4.48964326240108	4.323916421625	4.16561712478087	4.42030833118472	4.2519808716642	-0.512183949322958	0.262451509908985	0.660458649221437
Merged-chr1-156009175-3	chr1	156008665	156009665	+	784.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 6 of 6)	intron (NM_144791, intron 6 of 6)	25652.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	3.76610982780764	3.87425365694659	4.21403422848703	5.04113370784253	5.28877592773095	4.48078910905751	2.70639497388202	1.43544254571018e-07	9.83047764143643e-06
Merged-chr13-119406755-3	chr13	119406235	119407235	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2276.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	4.25744203402353	4.5648063105374	4.49573246400847	4.49688394686967	4.66909285810093	4.56256550989467	0.338742995664806	0.4363549664923	0.799472869647494
Merged-chr12-98259473-4	chr12	98258979	98259979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-20.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	8.33906831233785	8.57614331116921	8.33521004812306	8.24350319601945	8.33461512896122	8.23523112456677	-0.211062322380152	0.317822571505815	0.711605105342836
Merged-chr14-75847916-2	chr14	75847416	75848416	+	739.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028481)	promoter-TSS (NR_028481)	-7.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	3.64112108748182	3.57143371425579	3.68101765553424	3.40213852248053	3.30024851817451	3.64955795909473	-0.661622630052356	0.257099375119823	0.654411893697468
Merged-chr5-65567894-2	chr5	65567394	65568394	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310619, intron 2 of 5)	intron (NM_001310619, intron 2 of 5)	30649.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	3.85150892410766	4.07182129180633	4.07109690284956	4.02846352931998	3.89697277809053	4.13896620508638	0.0532274918840956	0.915202702323694	0.980959026698783
Merged-chr7-128744857-4	chr7	128744359	128745359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029982)	promoter-TSS (NM_001029982)	-11.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	7.13656904375026	7.16398043519081	7.02340333031859	6.98840734729986	7.27601695738192	7.04098754660708	0.00317382156635183	0.989725791027502	0.997611022725407
Merged-chr16-29607294-4	chr16	29606809	29607809	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27975.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	5.03508286735743	4.90052908638428	5.11434373920749	5.07919278571871	4.70268041215757	4.74206853867864	-0.355401185614638	0.370518574818806	0.754838358760403
Merged-chr7-19832055-4	chr7	19831574	19832574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9319.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	5.64508368610402	5.37150825151806	5.27340860413403	5.43393575163381	5.18547826060341	5.40071519685229	-0.214206282397478	0.544907643594652	0.857896259450602
Merged-chr3-21735919-3	chr3	21735413	21736413	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-340739.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.61015504973226	4.36139316066289	4.82355599646537	4.81038924200818	4.27728859451118	4.74404142712422	0.0496876718468939	0.914946042397844	0.980959026698783
Merged-chr10-12471942-2	chr10	12471442	12472442	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 57 of 73)	Lx9|LINE|L1	389793.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.08939661069452	2.89666404319133	3.12570212386286	2.96865037374476	2.96644760331064	2.76973435106097	-0.605353154778175	0.39209608592979	0.770891120887197
Merged-chr15-25909975-2	chr15	25909475	25910475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23577.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.06353578971832	4.12453873582519	4.21865238526583	3.83043576947418	4.05703960327279	3.90841688210921	-0.562763069205039	0.258457685684845	0.656043046596035
Merged-chr7-90147069-2	chr7	90146569	90147569	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16856.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.47487912492689	6.75174710334199	6.20836652769182	6.52052030728045	6.70847483175538	6.33348237685684	0.0480222259265189	0.873192349243898	0.970397726762468
Merged-chr8-71951659-1	chr8	71951159	71952159	+	545.0	f1_c57bl6.idr	intron (NM_001164581, intron 1 of 3)	RSINE1|SINE|B4	593.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	4.87684488261034	5.26015391915023	5.17513852294654	5.09335308482741	4.79915362834215	5.00349092194936	-0.315973255019486	0.417512365842442	0.788067258059069
Merged-chr5-148399357-4	chr5	148398855	148399855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007513, intron 1 of 12)	CpG	549.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	5.96597556797826	6.02353381134199	5.3270689351558	6.02732894828677	6.12908617987228	5.42914335528869	0.154414085807476	0.694326111077655	0.919210273513843
Merged-chr10-39427040-4	chr10	39426645	39427645	+	802.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	57346.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.21225650879778	4.02192161493758	4.37526064582676	4.21707502789857	4.10634656595742	4.27205960032768	-0.0203319443085503	0.965893552022531	0.992149602210833
Merged-chr9-62374410-4	chr9	62373931	62374931	+	682.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	33088.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	5.76052845870504	6.06329725094578	5.91305068973177	5.66645480442528	5.89581775533189	5.7497052621148	-0.248807830909353	0.427888230528904	0.79474992357457
Merged-chr3-8972246-2	chr3	8971746	8972746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	B1_Mur2|SINE|Alu	-8100.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.76641054115517	3.9202787854609	4.08555287037631	4.06299624191826	3.84886216093353	4.10802114604459	0.245345570877937	0.632209451135044	0.895435008062156
Merged-chr4-154910803-4	chr4	154910299	154911299	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-11756.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	7.55230891783246	7.8041033350045	7.22826419263704	7.82944273258502	8.21182496190997	7.46410113288855	0.46549905864994	0.115781225244064	0.45424164041984
Merged-chr3-88177678-4	chr3	88177181	88178181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045997, exon 1 of 3)	non-coding (NR_045997, exon 1 of 3)	104.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	8.98491347235085	8.89263683699375	8.44393381000993	8.79080097534508	9.00555020227207	8.27116997240745	-0.0922554569667136	0.739779336411077	0.934245371298156
Merged-chr12-3418955-4	chr12	3418449	3419449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	7798.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	5.3449426404218	5.74000507597159	5.57431935323991	5.69365433469271	5.75677440102995	5.91484965957534	0.406823311886162	0.219315320577714	0.61348716448028
Merged-chr7-99128757-2	chr7	99128257	99129257	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	12387.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.24878875937538	5.17055738302991	5.52213025371518	5.57718276601434	5.76134130415742	5.46998180075128	0.591430468066865	0.0862467029507436	0.389028875108445
Merged-chr7-80790959-2	chr7	80790448	80791448	+	740.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B4|SINE|B4	12383.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.04271729994865	5.09872547817228	4.82537080946554	5.03809397210276	5.1995301143386	4.63520168322947	-0.0145361255545262	0.971797326339608	0.993783614343214
Merged-chr3-96636737-4	chr3	96636237	96637237	+	850.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162387, exon 2 of 5)	exon (NM_001162387, exon 2 of 5)	890.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	4.96283208842282	4.92760871495171	4.99550724189834	5.34544502142173	5.48212384930376	5.09751943815084	0.765780706358661	0.0363458650250777	0.234602958693481
Merged-chr5-123903990-2	chr5	123903490	123904490	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3285.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.90036657996649	3.70006520618102	3.63241551349289	3.16253605276568	3.07783419744083	3.37154627087312	-2.24257232438321	0.000505082656045694	0.0105754699658405
Merged-chr4-150656125-4	chr4	150655645	150656645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3971.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.97953002970994	5.99192162063458	5.47174906397386	6.18626001945461	6.02258693145729	5.72006194081212	0.258187940814143	0.451940062285516	0.809286173636239
Merged-chr13-37434234-4	chr13	37433730	37434730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88885.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.54850006241627	5.57920463846126	5.39689836333742	5.32187248519352	5.39303326566611	5.39894110083055	-0.281250296715726	0.395868954296208	0.773172404503882
Merged-chr4-34765921-4	chr4	34765422	34766422	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-9663.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	3.14790036950259	3.35701422432118	3.48470251262153	3.56151066178796	3.66674791711079	3.7104991465823	1.17685984605293	0.0493027987407593	0.282241986764438
Merged-chr5-86942919-4	chr5	86942417	86943417	+	917.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-16414.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	3.24921643636425	3.49949433450959	3.92029290695554	3.56561391604695	3.17510119445981	3.85480300011444	-0.0782856768952425	0.907901678483496	0.979069714243211
Merged-chr11-78080364-4	chr11	78079869	78080869	+	981.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	14.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	5.34496991167402	5.65694353653034	5.83709625525563	5.64357480559325	5.83161582025269	5.50132965904712	0.103268261758945	0.765110848752282	0.942123616786297
Merged-chr4-155224168-2	chr4	155223668	155224668	+	894.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.43547141515433	5.45097950601684	5.29998122385208	5.51258622286265	5.44814203156201	5.45708570668736	0.133558879341853	0.686087410579147	0.91659539440007
Merged-chr7-45333667-4	chr7	45333182	45334182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175130)	promoter-TSS (NM_175130)	98.0	NM_175130	68667.0	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	6.87091110022115	6.68561920635009	6.69969407779238	6.55024347878556	6.31534181738257	6.17587795362916	-0.632313698514682	0.021820214659542	0.17113740189437
Merged-chr6-28866341-4	chr6	28865848	28866848	+	737.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-34601.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.44450758022895	3.16858998922749	3.74294346231713	3.48707569334242	3.28382514435337	3.81124818103203	0.258903490849072	0.690553730872145	0.917914227905196
Merged-chr10-77976817-5	chr10	77976442	77977442	+	800.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1708.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	3.35101105587911	3.32850245695642	3.66970051543751	3.65908704020209	3.61921794928504	3.53048251043457	0.569623822351017	0.330098424789471	0.721715864639844
Merged-chr1-171007280-2	chr1	171006780	171007780	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11646.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	5.85895668390316	5.58444151172569	5.7153359524929	5.86774261267498	5.97476850569557	6.06336967342524	0.433132779294643	0.160734444937878	0.533481918404108
Merged-chr2-121139436-3	chr2	121138954	121139954	+	720.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290812)	promoter-TSS (NM_001290812)	-974.0	NM_001355748	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	5.16172318918291	5.72357587618386	5.48792295076797	5.77747780094981	6.08297588727901	5.82413406273542	0.777388048723501	0.0276310116220779	0.198319780475275
Merged-chr11-114880624-6	chr11	114880035	114881035	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9506.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.74395757932273	6.32544482257647	6.75225524875428	6.60736456536221	6.74186435966656	6.70323112571915	0.110310301831132	0.692199615114407	0.918590542007936
Merged-chr2-167906968-4	chr2	167906459	167907459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-25368.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.86086993684122	3.81044523913845	4.0739774532122	3.80284850028502	3.72241528510376	3.70271600109807	-0.540767846316558	0.304485987586686	0.700969682849711
Merged-chr11-69673110-2	chr11	69672610	69673610	+	770.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-687.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	6.8057693317329	6.50022927163151	6.91249405292264	6.57776035097862	6.84111074084327	6.98379715430861	0.0996030392861916	0.722493669985856	0.928821151735982
Merged-chr2-167886699-4	chr2	167886202	167887202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45625.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.30220371820859	6.49014563544924	6.31963143528873	6.61958519217739	6.63150356316959	6.41850133248755	0.307277697174286	0.256124689191602	0.653139712382384
Merged-chr11-70630835-2	chr11	70630335	70631335	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8287.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	4.57263035137414	4.23087486886329	4.53569854648039	4.30568230034839	4.41266826159569	4.60151844346301	-0.0297704946077608	0.947481977248059	0.988008807662239
Merged-chr4-120854083-2	chr4	120853583	120854583	+	623.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	-716.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	2.52952288174918	2.23125556655526	2.59506061539973	2.20503394564754	2.22683077013757	2.22096621278548	-1.64326744167656	0.0696913435545118	1
Merged-chr10-61370997-3	chr10	61370485	61371485	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	12538.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	5.31614216562558	5.60266896581608	5.65063814779582	5.6962686352754	5.70482000840149	5.65945454114924	0.303596490745543	0.352987793283541	0.74042924884689
Merged-chr11-71289620-3	chr11	71289088	71290088	+	808.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4356.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	2.92481949809752	2.98525802511964	3.13211632595397	4.0793880502789	3.87760005219391	4.36654284827562	5.75274379127564	1.1001543804511e-07	7.77753999053313e-06
Merged-chr15-96640874-4	chr15	96640375	96641375	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1087.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	7.86122628090779	7.86898351723009	7.07342875680345	7.38863231855812	7.29970825216802	7.10369859043584	-0.570017203674471	0.0553556090905774	0.302510805281017
Merged-chr14-48131452-2	chr14	48130937	48131937	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10568.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	5.09534242652402	5.5461294780345	5.26979286346658	4.14964059394362	3.74159183402145	4.51250526906403	-2.92209060342587	1.46135758064048e-08	1.26927600803688e-06
Merged-chr1-78658416-1	chr1	78657916	78658916	+	1000.0	f1_balb.idr	promoter-TSS (NM_001136226)	promoter-TSS (NM_001136226)	-24.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	6.65870195276263	6.64224295318711	6.41140065887286	6.31420495466699	5.79108687210058	6.12419828494653	-0.815321811749224	0.00720768626697466	0.0798265884337053
Merged-chr16-54396212-2	chr16	54395712	54396712	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	887025.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	1.83481717707897	2.02050482800792	2.13241988051908	2.19195098063896	2.04832647096531	2.27331377804157	1.33167038607027	0.176381852734964	1
Merged-chr10-90983225-3	chr10	90982723	90983723	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	99520.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	2.40168950946946	2.56713525838239	2.60880661908995	2.92461285319111	2.94317074069163	2.81282811989513	2.14752753819492	0.00794808776331219	0.0856996872631438
Merged-chr7-140112397-7	chr7	140111929	140112929	+	970.108826	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053119, exon 3 of 8)	exon (NM_053119, exon 3 of 8)	3994.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	5.37959275090268	5.55323183665282	5.46716956440553	5.53467278533452	5.60909660285008	5.5588830937534	0.190368423639755	0.557549996935103	0.864250916545731
Merged-chr11-60878014-2	chr11	60877514	60878514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168507, intron 1 of 2)	intron (NM_001168507, intron 1 of 2)	1024.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	7.21073062790783	7.14967902709205	7.08294647264993	7.14741608820494	7.37410293105645	6.79075171707436	-0.0164243457162171	0.951174656331181	0.988674121870846
Merged-chr4-128610190-4	chr4	128609692	128610692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-94.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	6.13712391460625	6.18501291604985	6.19332263120809	5.98886835651323	6.2624274627671	5.98791731302656	-0.124877631073128	0.668159902239785	0.908976375106763
Merged-chr12-85604534-4	chr12	85604028	85605028	+	970.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4510.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.36162359968034	4.93900940782798	4.71849000294686	5.27753470198282	4.78403375624488	4.94864086327879	-0.0536715364675865	0.901195488158341	0.977124931501791
Merged-chr13-58455773-2	chr13	58455273	58456273	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52430.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.65958843126469	3.6398403738347	3.8031487949908	3.63438214297356	3.490937626502	3.61811205409222	-0.415592342146959	0.451090629969781	0.808898216967113
Merged-chr7-44829571-2	chr7	44829165	44830165	+	769.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_053074, exon 2 of 2)	exon (NM_053074, exon 2 of 2)	-6623.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	2.29386611702363	2.45850075086013	2.51774803548778	2.23727961770474	2.15881937607756	2.59128631788246	-0.550210149570126	0.534634512548489	1
Merged-chr19-38930925-4	chr19	38930426	38931426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008234)	promoter-TSS (NM_008234)	-64.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	4.25921734918621	3.89228888244792	3.96204684282629	3.94837136708936	3.8040402188418	4.07940238258635	-0.330350390818912	0.522826379043441	0.847803428905864
Merged-chr2-46149987-4	chr2	46149477	46150477	+	856.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	453372.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.18251083183112	3.04149764748043	3.33917548479665	3.12139008962592	3.06227206724096	3.24695190285214	-0.198825608374607	0.758936084894634	0.940311236380535
Merged-chr5-138187430-4	chr5	138186916	138187916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178612)	promoter-TSS (NM_178612)	35.0	NM_001356602	21343.0	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	5.72841938014624	5.93142826644123	5.87744535604779	6.20359840243566	6.18073559348653	6.20693665534287	0.601754722744731	0.0381742305511876	0.241745594293035
Merged-chr2-52930383-6	chr2	52929941	52930941	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	72573.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.99405801265571	4.63104877967402	4.62855870078891	4.75391772911971	4.4830219858115	4.81321626219041	-0.201422364184182	0.63804701812658	0.897380718500389
Merged-chr2-153346421-4	chr2	153345916	153346916	+	973.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040318)	promoter-TSS (NR_040318)	277.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	7.31298604522298	7.08648568938494	7.21849283771003	7.26268121191073	7.19650191996196	7.3215557750831	0.0733347951467482	0.756067099342458	0.939527320894303
Merged-chr12-85395244-2	chr12	85394744	85395744	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20527.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.63612909257562	6.90592742859255	6.93453163350426	6.72548500522635	6.89012799557502	6.8813780472178	0.00959521669370518	0.970433614966991	0.993459421031373
Merged-chr11-60879601-4	chr11	60879046	60880046	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168507)	promoter-TSS (NM_001168507)	-508.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	7.85826929981595	8.26935733659945	7.9785009859266	7.86207928095245	8.29608996262175	7.63944038579286	-0.109762925784171	0.687641232304672	0.917193226920892
Merged-chr5-147059505-4	chr5	147058986	147059986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	17086.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.39047650642486	7.17109172575833	6.94064819963779	5.6614605686966	5.20043183159992	5.9363732493785	-2.62081125882773	2.12710396448968e-15	6.29865005968889e-13
Merged-chr11-83473949-3	chr11	83473451	83474451	+	694.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027427, intron 1 of 15)	intron (NM_027427, intron 1 of 15)	843.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	5.92460827820573	5.84748481247337	5.84745164431991	5.99623890640749	5.89909534972445	5.90895657547234	0.105937759402919	0.719275288797105	0.927760958545461
Merged-chr5-99221655-2	chr5	99221155	99222155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 12 of 13)	intron (NM_181318, intron 12 of 13)	31272.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.74175649554673	4.57088293304157	5.11094397443953	4.75583580374206	4.49395620364929	5.20321014905307	0.0486024717164036	0.916021851237766	0.981201223155309
Merged-chr9-110117314-5	chr9	110116866	110117866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001252682, exon 1 of 23)	5' UTR (NM_001252682, exon 1 of 23)	250.0	NM_001252682	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	6.98181212165936	7.45354885321278	7.23615705272819	7.31072278544667	6.96290897885137	6.97370792073823	-0.219902173789296	0.418866532471672	0.788755230826602
Merged-chr13-5888354-4	chr13	5887844	5888844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26855.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.89382273443501	6.92939916909312	6.59207830050604	6.92705048366827	7.00537470497416	6.78530969460251	0.141120895041715	0.588665849913957	0.876614432665912
Merged-chr7-4812822-4	chr7	4812318	4813318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-478.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	8.37220629419024	8.69335917423889	8.16498094432304	8.42643620936505	8.81676481381999	8.10541156989617	0.0792129489497388	0.77479338220014	0.944503973894388
Merged-chr12-31952226-1	chr12	31951726	31952726	+	616.0	f1_balb.idr	Intergenic	Intergenic	-1981.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	5.3282065970101	5.2035490444987	5.41523955373087	5.68025935829653	5.64241390526253	5.93680126326019	0.832148115208379	0.0125972935629873	0.118247961098887
Merged-chr13-23760258-4	chr13	23759764	23760764	+	899.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178192)	TTS (NM_178192)	985.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	6.2604395809938	6.15626579773303	6.21816172867035	6.54268272113211	6.86040404175427	6.80109902924158	0.859684502627674	0.00160843746424751	0.0261243147618791
Merged-chr6-134544299-4	chr6	134543805	134544805	+	839.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	22608.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	5.34069869249597	5.46867500162083	5.22867187178286	5.95780039657026	5.9332185224375	5.84942854106131	1.03111406439377	0.00135107954560903	0.0228126271978564
Merged-chr3-32715347-4	chr3	32714828	32715828	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019673, intron 4 of 13)	intron (NM_019673, intron 4 of 13)	6782.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	4.3102962909963	4.67164872625004	4.86919499864961	4.8955788336107	5.02075715840691	5.00332716695683	0.790129086682275	0.0613722989620302	0.321254796932097
Merged-chr9-95552226-4	chr9	95551730	95552730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7587.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.90652757787568	4.90150598155688	5.11713710041767	5.09005541648926	5.09681669199737	4.82079496365573	0.101991918058763	0.789329194034309	0.94919362339519
Merged-chr17-29392885-2	chr17	29392385	29393385	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31971.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	3.29283363647752	2.93997845199729	3.14271185710976	3.38255297749818	3.11199213658435	3.33044684018309	0.595267390463892	0.370462800491528	0.754838358760403
Merged-chr2-27010741-2	chr2	27010241	27011241	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243240, intron 1 of 2)	intron (NM_001243240, intron 1 of 2)	815.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	4.76392887154706	4.86361466202879	4.95790891927621	4.84913509337702	4.85969584242412	5.02190301134796	0.106611173368454	0.781381510158527	0.946174647340264
Merged-chr2-91071169-2	chr2	91070669	91071669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-854.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	6.15574928775332	6.22966236787371	6.40882766907998	6.32902863479456	6.42382570274557	6.61861501424823	0.322992038174932	0.24890797215002	0.645870662882678
Merged-chr10-117081954-4	chr10	117081420	117082420	+	741.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	B1_Mm|SINE|Alu	-18068.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	4.82860521189438	4.96132354239894	4.74514912196498	5.31905187380717	5.257917597997	5.18386905495384	0.848101431430427	0.0220660105512065	0.172368438410138
Merged-chr3-132168669-1	chr3	132168169	132169169	+	660.0	f0_balb.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83377.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.27987468799658	3.40141683785542	3.59213421334835	3.03355075252853	3.1301951100762	3.35317338282505	-1.02989227372383	0.110737824871596	0.444764337850723
Merged-chr2-129623028-2	chr2	129622528	129623528	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	27566.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.45606479214272	3.40126703658178	3.79093691616951	3.90561073783149	3.60575076498137	3.95424617907552	0.926882259274999	0.109417590469035	0.441962080958616
Merged-chr12-55398710-4	chr12	55398209	55399209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011968)	promoter-TSS (NM_011968)	-116.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	7.77816860306004	8.28960989052048	7.93018293273503	7.86317190340382	8.34549908543879	8.21814764412599	0.196056671178367	0.454930342695153	0.810663309750856
Merged-chr4-118135048-4	chr4	118134540	118135540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-94.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.03725854911439	7.10968009261887	7.30394314567751	6.96732203008705	7.22592569795	6.7688296719126	-0.206827930462688	0.435460704046074	0.799034429229403
Merged-chr6-117841174-4	chr6	117840671	117841671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346652)	promoter-TSS (NM_001346652)	-10.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	5.3917153339745	5.77427883020134	5.43150993191779	5.00899062524447	4.95911015942294	5.14552147176124	-1.04157621027493	0.00405617470806039	0.0524729765404679
Merged-chr10-14042886-4	chr10	14042335	14043335	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	76456.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.84687184833851	6.84524087575639	6.46838903534871	6.63548151265467	6.5601513456526	6.4714196169761	-0.289007446998094	0.288200688689813	0.685555138616531
Merged-chr2-27675194-2	chr2	27674684	27675684	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.72179453180791	2.7144342500145	2.9532595075515	2.70651549602436	2.6328182675508	3.18779026727078	0.308068729119735	0.68934101933721	0.917319650405699
Merged-chr3-94310179-4	chr3	94309700	94310700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029431)	promoter-TSS (NM_029431)	68.0	NM_029431	75778.0	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	5.53306139920845	5.74331023175858	5.52055127592413	5.73027089522893	5.84957731216755	5.69657421644843	0.287176845765098	0.366826370045582	0.751897609642077
Merged-chr15-100616019-4	chr15	100615533	100616533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045701)	promoter-TSS (NR_045701)	371.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	8.97020123573557	8.85807928090323	8.66135457433243	8.60687232473901	8.80257224583339	8.73551312446936	-0.167319082370361	0.425900104919791	0.793463399937346
Merged-chr12-85673431-2	chr12	85672931	85673931	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-13289.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	2.42362101477991	2.31952651828623	2.55821230430599	2.4249649211753	2.18574818801834	2.24328186086556	-0.964692697185272	0.266145902698648	1
Merged-chr17-28702131-4	chr17	28701566	28702566	+	751.767883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	MTE2b|LTR|ERVL-MaLR	9498.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.58870436900617	6.48236599088822	6.17607760399862	6.21844839332771	6.19979156561165	6.57689418205155	-0.169383450858504	0.570253719278942	0.869107705040498
Merged-chr9-110656559-4	chr9	110656074	110657074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	71.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	7.39473162050274	7.43637845116336	7.39052500092978	7.64193305381677	7.94653829178757	7.40358467785987	0.417029741112181	0.0962875170826543	0.413664207546446
Merged-chr7-126759474-4	chr7	126758966	126759966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-160.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.98456633964237	4.70356669190735	5.09207939840532	4.87544847232581	4.58664290889589	5.09169529130858	-0.1661366993368	0.6919371988608	0.918541547639936
Merged-chr11-118239398-2	chr11	118238898	118239898	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	9194.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.77504694765413	5.95599299961675	6.14412932692043	6.09632016972319	6.4428510003132	6.22494866155107	0.53052885054927	0.0815796928155667	0.377796165557895
Merged-chr8-46142877-4	chr8	46142373	46143373	+	912.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18727.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	6.40841628669891	6.67506376276172	6.51360532236472	6.57467320350071	6.84050372735801	6.67455157654004	0.266380521452186	0.323390313140412	0.71668986599242
Merged-chr4-139616847-4	chr4	139616327	139617327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-6067.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	6.36095958022607	6.55060693377636	7.10410158130648	6.67730226015796	6.82567354642004	6.82666910303167	0.120895628833582	0.693741106056189	0.919037099765495
Merged-chr9-13662110-10	chr9	13661568	13662568	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173776)	promoter-TSS (NM_173776)	-392.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.84122547732096	5.79942636625911	6.0085149418294	5.79790031092595	5.92064118064791	6.04700903574683	0.0753787523517162	0.803434035300469	0.953504424667369
Merged-chr19-53944108-4	chr19	53943646	53944646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355242)	promoter-TSS (NM_001355242)	-160.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	7.75393576658974	8.08178105308836	7.79240480641612	7.9685994534469	8.03773065261213	7.85694599019846	0.101641460284428	0.65742721334431	0.904798742244684
Merged-chr6-31190779-4	chr6	31190282	31191282	+	949.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	27692.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	5.66233905113501	5.46567482366483	5.24245189358981	5.60425074328544	5.68137516543882	5.43921200362624	0.202304733424444	0.556154131921324	0.86357390983939
Merged-chr14-30603240-2	chr14	30602740	30603740	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 9 of 17)	RSINE1|SINE|B4	7070.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	2.52022221031673	2.62785427582478	2.6957159339841	2.46315946102583	2.27931557532331	2.52159774802327	-1.21238370260346	0.14261699334805	1
Merged-chr4-135875306-4	chr4	135874792	135875792	+	856.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1446.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	7.76392373390773	7.64349308018	7.54424890371697	7.82349323805011	7.96551306864279	7.71434673637347	0.269079909704923	0.233905913555242	0.630158568371129
Merged-chr1-24682097-4	chr1	24681594	24682594	+	940.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	MTC|LTR|ERVL-MaLR	3176.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.62734615239787	4.4783991078411	4.66119684214317	4.69463352455086	4.84947324658787	4.91274342504855	0.546842513580626	0.177029602585102	0.557817214068283
Merged-chr1-165585924-2	chr1	165585424	165586424	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48617.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.8341147293649	2.66351519335957	2.96979727340054	2.51623425572983	2.52325386171323	2.75088815251088	-1.26975521471793	0.104893500637217	0.432154846277496
Merged-chr7-28209139-4	chr7	28208649	28209649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	28833.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	6.05210154739257	6.31313257228442	6.33445236048858	6.42123564221686	6.36347725404487	6.1482851052798	0.145067846507327	0.614264386102634	0.887435546271868
Merged-chr1-119502703-4	chr1	119502203	119503203	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	RSINE1|SINE|B4	2079.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	4.2913380485921	4.20991422581259	4.38623219927269	4.54334248719543	4.5071199579892	4.49598808622265	0.578745215171088	0.183109652699693	0.566085379224821
Merged-chr1-72428743-4	chr1	72428264	72429264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045533, exon 4 of 4)	exon (NM_001045533, exon 4 of 4)	107800.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	5.1656400128363	5.13207839656478	5.11758825829253	5.1324574562747	4.79099133112583	4.59532917607031	-0.587431226074165	0.141626619526699	0.502300317871257
Merged-chr7-141009154-4	chr7	141008655	141009655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025378)	TTS (NM_025378)	1589.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	4.50179177493906	4.23076020345284	4.63704730992703	4.48067577025157	4.44917174399995	4.5863402742181	0.110623243610768	0.802855594235735	0.953400450869743
Merged-chr2-91972909-2	chr2	91972409	91973409	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-9346.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.15118016996654	7.36403704461381	6.94389043930289	6.95197876066644	7.07701970642095	6.95928057329579	-0.261384567844598	0.305309386938203	0.701501724978019
Merged-chr4-145096992-4	chr4	145096476	145097476	+	890.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 42 of 69)	intron (NM_001276465, intron 42 of 69)	93690.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.73269078564218	4.74304847940283	4.93846115714246	4.38550333159114	4.34920552743011	4.64216550369997	-0.840859231433512	0.0469373265356702	0.274302577512285
Merged-chr13-4616812-4	chr13	4616324	4617324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7660.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.96355431893036	4.84565154341268	4.64462954286558	5.00904447966683	4.90594325317936	4.91207334632588	0.240348363503813	0.538458362529001	0.855202203269959
Merged-chr3-105053045-4	chr3	105052526	105053526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163332)	promoter-TSS (NM_001163332)	-73.0	NM_001163333	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.07096090268668	6.68249579148655	7.1680848164532	7.22935875704775	7.31842271798048	7.07622635832254	0.352110867877014	0.186274733219813	0.570803258887202
Merged-chr15-99971424-2	chr15	99970924	99971924	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028124)	TTS (NR_028124)	-1356.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	5.58553658876081	5.37745769508907	5.92660388584089	5.85187926074454	5.74358218036666	6.15323686273184	0.508818057609862	0.141506835967932	0.502183459290427
Merged-chr7-34973239-3	chr7	34972732	34973732	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	60825.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	3.33835496360453	3.27605409904826	3.60963025168091	3.05359943523255	3.0203921335508	3.26474192789405	-1.25727417490917	0.0547753208300134	0.300642803141409
Merged-chr2-14231616-4	chr2	14231115	14232115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	2201.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	7.60721205572891	7.76707998411903	7.18153172432119	7.54374413858839	7.89575371670553	7.28978336641719	0.0874616975257027	0.761190340395637	0.941152913528252
Merged-chr8-31149847-4	chr8	31149317	31150317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-499.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	7.25913914231074	8.04018467052565	7.75490314756174	8.24266000045103	8.58141978997651	8.05823188198923	0.832951821898887	0.00444248764936717	0.0563148251566946
Merged-chr10-81628404-1	chr10	81627904	81628904	+	565.0	f0_balb.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-136.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	5.00591262417456	5.17088655850246	5.79972009115162	5.22738672609569	5.51309130112797	5.31216547551201	0.00134861273261762	0.997356373275959	0.999438741884046
Merged-chr4-123962624-4	chr4	123962137	123963137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	45204.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.52140962707513	6.89288064529435	6.48714286809631	6.17266545865913	6.52957133620737	6.43634175118804	-0.422321879714918	0.150670109205453	0.517564234271863
Merged-chr11-102137798-4	chr11	102137304	102138304	+	813.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7709.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	2.89642738841134	2.69803215611363	2.89984123992715	2.97994770046355	2.78782971368732	2.72204823700227	0.016604452258488	0.98180311119426	0.99582830941535
Merged-chr11-69992179-2	chr11	69991679	69992679	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 1 of 3)	intron (NM_019749, intron 1 of 3)	809.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	7.14753939888665	7.21957860933457	7.05971299454496	7.31881123063616	7.50350978504795	7.42370833708897	0.403523901705282	0.0837769542842013	0.383059281903496
Merged-chr9-119980935-3	chr9	119980379	119981379	+	817.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	2144.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	3.92775509078822	3.85898756473431	4.24601160386473	4.39859221639378	4.33295108700154	4.03080856379943	0.732368426132063	0.14433083564997	0.507146496154939
Merged-chr2-31083651-2	chr2	31083151	31084151	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 5 of 15)	B4A|SINE|B4	12849.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.68895049366879	5.44979628653484	5.5056716193088	5.46160922861526	5.52385679116551	5.2540176865066	-0.240631806646693	0.477786417775573	0.823367525497911
Merged-chr18-67723974-2	chr18	67723474	67724474	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 1 of 9)	CpG	647.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	8.05907884541616	8.0019979164795	7.99513911017176	8.07001641457092	7.9750336314501	7.70359961565645	-0.125365228397219	0.57549666986408	0.871191771386864
Merged-chr5-21384317-1	chr5	21383817	21384817	+	624.0	f0_balb.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11644.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.88316915142888	4.51630979734727	5.31967923739767	5.24715379427031	5.01546483803027	4.89454232248584	0.268266654134949	0.542618593954694	0.857318248006765
Merged-chr14-21821118-2	chr14	21820618	21821618	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10443.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	2.42181497203347	2.80108039274331	2.60873624554546	2.33115890414758	2.25132009797835	2.49265823447021	-1.7057600318384	0.0518236538888467	1
Merged-chr4-133750342-2	chr4	133749842	133750842	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	3269.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	5.41684711919008	5.28946608952814	4.9986435138349	5.25236063342552	4.97304958149419	4.90996068761094	-0.412745441856313	0.280980207547549	0.679151811463077
Merged-chr4-132514095-4	chr4	132513595	132514595	+	968.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3639.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	6.39821951330734	6.47904925424958	6.23719844796869	6.46651177147116	6.77169629911491	6.14185858408329	0.195434067532482	0.52267766124394	0.847682942091387
Merged-chr8-61586704-3	chr8	61586152	61587152	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	B4|SINE|B4	4517.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.81390197909678	3.61485711585743	3.76465946459815	3.52190137311936	3.31961823425474	4.26873506502955	0.119541805334855	0.854327038342127	0.965987623019113
Merged-chr12-99394494-2	chr12	99393994	99394994	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	55580.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.12733786427103	3.91657838306993	4.15479258136313	4.06505149404403	4.04204954600221	4.08405331497334	-0.00998823632182714	0.983587366368797	0.996388287912135
Merged-chr2-102988039-4	chr2	102987540	102988540	+	908.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85473.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.47702982864874	6.0240917007155	6.33770962768859	6.01868827207444	6.07214968539562	6.48585104891412	-0.154694879890714	0.626357250960086	0.892898134342342
Merged-chr16-87737294-3	chr16	87736747	87737747	+	965.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mur|LTR|ERVK	38293.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.24177777776432	2.03475051850814	2.33497703848943	2.00207204649054	1.90003585554428	2.08515150489601	-1.72206863886903	0.0795655695011673	1
Merged-chr12-72407134-3	chr12	72406597	72407597	+	654.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	1957.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.09030171920591	3.01219242480288	3.18595800038737	3.65739380716886	3.77808631726725	3.80696715280381	2.73548177529554	3.19420232938542e-05	0.00108660338276166
Merged-chr6-100672208-2	chr6	100671708	100672708	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1051.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	3.15548228511299	3.18289958481313	3.17708836455216	3.08187478739771	3.2253274855333	3.19096180285093	-0.011379574190371	0.98565762204441	0.99691465847822
Merged-chr6-29557302-4	chr6	29556785	29557785	+	845.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 17 of 22)	A-rich|Low_complexity|Low_complexity	28003.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.57730026719018	4.44646407276593	4.74545998397871	5.03325013494123	5.28910924060684	4.96270641221831	1.18666897257331	0.00308615719581824	0.0430211036940265
Merged-chr7-84688812-2	chr7	84688312	84689312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038175)	promoter-TSS (NR_038175)	-828.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	6.55224483289764	6.96993120945016	6.61365590619992	6.82761235978008	6.95217079729884	7.01631222165	0.309595494821929	0.2539788611102	0.651117231535132
Merged-chr5-142794778-4	chr5	142794294	142795294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	22593.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	6.81785773040302	6.71474839869356	6.99214393927422	7.08218541771646	6.84556094012615	7.02389468543934	0.222116097330638	0.383787991637502	0.765020032296991
Merged-chr10-59943749-3	chr10	59943243	59944243	+	693.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	8027.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	2.25186049590048	2.07666824539179	2.32033164273396	2.0451895340839	1.9404739863771	2.26778354884872	-0.976276927707082	0.302904687624829	1
Merged-chr1-171111310-5	chr1	171110841	171111841	+	977.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10320.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	6.07346259918931	5.83538604387644	5.90157784606846	5.80936862662665	6.12840823442898	6.05531191662355	0.11386128162657	0.710316840249945	0.924293540432205
Merged-chr7-25250799-4	chr7	25250317	25251317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-59.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	7.72534348690551	7.54524687068335	7.69488220836312	7.70133576184068	7.85648491429561	7.63273956843676	0.120276974207572	0.593021082546305	0.878398361724896
Merged-chr17-73932845-2	chr17	73932345	73933345	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	17351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	3.63228393306211	3.60421298670197	3.56997243028863	3.4667773885795	3.19613738847674	3.30210767268524	-1.06901801044025	0.0748803077872179	0.360194279706256
Merged-chr3-149101253-4	chr3	149100763	149101763	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146628.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.84724447925369	3.66352212653297	3.68783132070546	3.11348484885518	2.85485056648431	3.32428567676274	-2.82283519765962	0.000121659839358027	0.00334536414848073
Merged-chr13-20098103-3	chr13	20097590	20098590	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	7583.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.00619730241127	4.29422786845257	4.19106173932072	3.84185654306285	3.86285888654264	4.12376243910757	-0.673657265952882	0.180157292655534	0.561849644263301
Merged-chr16-48832232-4	chr16	48831740	48832740	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10312.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	5.21211037328699	5.06255458106584	5.05305180899038	5.01919996584639	5.15616797453758	5.15175115544063	-0.00725745014806898	0.983982483963943	0.996464361754829
Merged-chr2-150666378-2	chr2	150665878	150666878	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1116.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	4.21118101043073	4.39112397287137	4.13296156613144	3.95774230074165	4.0500573582841	4.24670829755467	-0.487535978997644	0.312064946320438	0.706880086573454
Merged-chr9-43238731-2	chr9	43238231	43239231	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178644, intron 1 of 3)	intron (NM_178644, intron 1 of 3)	1085.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	2.18527596199047	2.31836713478177	2.46042199056469	2.37358251444082	1.98446162363414	2.139865749041	-1.02663452970051	0.284629152633302	1
Merged-chr3-88395468-2	chr3	88394968	88395968	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310605, intron 2 of 2)	intron (NM_001310605, intron 2 of 2)	-11002.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	2.8763726920551	2.97963778280687	3.11765159093232	3.28791458137266	3.29167720265673	3.46491007663278	1.57514046429186	0.0175915632655353	0.14827378405578
Merged-chr2-166775204-2	chr2	166774704	166775704	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-18563.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	2.42486608959098	2.49322060596385	2.45854936371468	2.57156362168447	2.47478186226933	2.78040680113152	0.881671439440896	0.2677208253051	1
Merged-chr7-74976894-4	chr7	74976399	74977399	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53312.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	2.29165057771702	2.41269738011381	2.1345851739827	2.43968653227704	2.19107506946946	2.48053966491872	0.563691418713379	0.532775805739579	1
Merged-chr19-60810894-1	chr19	60810394	60811394	+	546.0	f1_c57bl6.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	-661.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	3.89566943428143	4.05138090957513	3.78218109315532	3.67967544157735	3.77197713466882	3.69125969914993	-0.650713338388238	0.220789294032722	0.615438215097489
Merged-chr16-15637890-4	chr16	15637370	15638370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	4.0	NM_011159	19090.0	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	5.87087906495812	6.26471488665834	6.08171024883704	6.21546492160227	6.29642644601021	5.93010919264431	0.139638419379636	0.652245367996998	0.902896807825606
Merged-chr13-32965354-4	chr13	32964872	32965872	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011454)	promoter-TSS (NM_011454)	-141.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	4.90225856352729	4.7843778309516	4.29590812798895	5.01784171822019	4.6469805915935	4.606135281345	0.172125576008626	0.709345253304148	0.923955477167413
Merged-chr8-3677441-4	chr8	3676938	3677938	+	736.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025701, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	961.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	3.24200375071369	3.57145260459069	3.4287974451135	3.39363785805724	3.35947582378745	3.49956688669372	-0.0297164285553346	0.960697052179247	0.990386809359123
Merged-chr10-98896221-4	chr10	98895711	98896711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18431.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.57669576110627	7.25014738374714	7.0516276168564	7.00635775659685	7.28808768284497	6.92474909406002	-0.340234608107002	0.21573536374894	0.609112973600893
Merged-chr15-25680886-4	chr15	25680386	25681386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	ORR1D2|LTR|ERVL-MaLR	58336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.21459346382054	5.12054599364692	4.9260800090512	5.65492339223156	5.6331675008864	5.18369352307664	0.826659303373669	0.0260973952298985	0.191728064832191
Merged-chr2-29890404-4	chr2	29889885	29890885	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013615, intron 1 of 16)	CpG	322.0	NM_013615	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	5.5107817256908	5.67645588389333	5.70294481656032	5.68772840646781	5.71149005758427	5.65886705154572	0.109133966581289	0.728565030482697	0.930478966998914
Merged-chr11-100701871-2	chr11	100701371	100702371	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 5 of 12)	intron (NM_030150, intron 5 of 12)	2400.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	6.63024321760794	6.27335548486426	6.40231410360861	6.66202850137331	6.80581395769391	6.36391668680446	0.302196151914864	0.297965611856911	0.694757681762872
Merged-chr19-6298883-2	chr19	6298383	6299383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-7574.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	8.2281496100039	8.24600391305188	8.17526470442371	8.20011589781538	8.62689646147595	8.5034803671608	0.335951296670477	0.133727061457122	0.48897703154
Merged-chr7-48943927-4	chr7	48943415	48944415	+	889.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-15158.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	2.76001285656207	3.08925086582207	2.8920229592903	2.75825165160907	2.51277236210973	2.90521922500115	-0.98906480691683	0.205401241718493	0.596047563330878
Merged-chr11-55458381-4	chr11	55457875	55458875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2833.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	5.69062873585206	5.51680144125198	5.4908352838044	5.6336538218315	5.27467525422434	5.4343635997882	-0.230753798854135	0.497590647749587	0.833756672867911
Merged-chr4-32800343-4	chr4	32799843	32800843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175364)	promoter-TSS (NM_175364)	84.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	6.40049706417205	6.47735144122454	6.66794475072543	6.46683706151911	6.00522842307251	6.14045517184725	-0.487833114880302	0.101116316196926	0.424096713049379
Merged-chr5-92444980-2	chr5	92444480	92445480	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 11 of 11)	intron (NM_007644, intron 11 of 11)	-9781.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	4.27836300697688	4.31077312862033	4.75363935591226	4.5497572795272	4.69370551946869	4.70875059885372	0.49299370183331	0.268743949458915	0.665961240889196
Merged-chr18-27022100-4	chr18	27021614	27022614	+	728.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267957.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.54829565447321	3.37982358288806	3.59041245157427	3.64512304890578	3.6199952288488	3.55341052048116	0.371279501504878	0.511250861868714	0.841331921585713
Merged-chr7-46717177-4	chr7	46716658	46717658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1482.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	2.93128229593486	2.73670119275843	2.90612974394626	2.98506166420271	2.74328453406081	2.72956146601144	-0.171307179290355	0.813955361928473	0.955984497572397
Merged-chr4-116672953-4	chr4	116672464	116673464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12635.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	6.14165217332164	6.34715940311476	6.34509039772452	6.05684258642446	6.3621510861895	6.26921736416245	-0.0656666441836371	0.819576871204751	0.957283576025177
Merged-chr9-108079318-4	chr9	108078819	108079819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032543)	promoter-TSS (NM_032543)	-18.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	5.64605629195979	5.47205218939821	5.60080844296393	5.50536082642084	5.30727406311272	5.20414967316523	-0.431688226421939	0.202908487890253	0.592772302593993
Merged-chr10-8871148-2	chr10	8870687	8871687	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	14883.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.2382204076333	8.18791177760197	8.02669687190662	7.84203248198228	7.9844692117918	7.72376877442822	-0.421293202341427	0.0565433172849415	0.30663876282572
Merged-chr17-34000366-4	chr17	33999863	34000863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-16.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	8.52130029574024	8.39317526645277	8.02058784451836	8.53599585212501	8.76540612399067	8.22132440585691	0.275694502675265	0.284246714582126	0.681994389352597
Merged-chr2-70838750-4	chr2	70838313	70839313	+	743.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13333.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	4.23922761638782	4.37450020648051	4.26227182882604	4.48462455585531	4.34660405650743	4.41941013642703	0.314095007265591	0.478782451127434	0.823891137932924
Merged-chr5-66152433-4	chr5	66151921	66152921	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-467.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.74609847030333	6.82596991707035	6.57678505705868	6.93781708788148	7.39043252069539	6.98261631003217	0.618334021305246	0.0239921553253053	0.182131124925463
Merged-chr8-66494996-3	chr8	66494496	66495496	+	958.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8466.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.69398234984729	4.4125231568439	4.41190877244569	5.06661324176559	4.73930897859094	4.61601400455731	0.720176151881633	0.0988296025079362	0.419333642002316
Merged-chr4-101253059-1	chr4	101252559	101253559	+	702.0	f0_balb.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	12223.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.27132474245442	5.14714575518128	5.12326224967454	5.14387937337132	4.97550486607327	5.37493373775073	-0.0477510002242531	0.896871317219687	0.97587199430405
Merged-chr17-84238385-3	chr17	84237887	84238887	+	991.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-50440.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.45318863777336	3.31558832626498	3.32187892517929	3.42116609012135	3.31400133015746	3.27716326188612	-0.106027166765342	0.860323912785003	0.967467627140602
Merged-chr12-3913045-4	chr12	3912551	3913551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	21307.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.70346245683095	5.78298337721477	5.47157063771102	5.45227325394051	5.77923876838765	5.30874181555474	-0.227251729441513	0.517018812610169	0.844460030891516
Merged-chr4-63403323-4	chr4	63402815	63403815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001045514, exon 1 of 22)	5' UTR (NM_001045514, exon 1 of 22)	130.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	7.59591812626956	7.75221372761451	7.70852826958785	7.72196859882142	7.88055698235885	7.5889782623757	0.0811453088620346	0.720783972036022	0.928324696220711
Merged-chr1-64302304-2	chr1	64301804	64302804	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER99|DNA|hAT?	-180915.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.94533105820598	8.22773740885479	7.95380667007128	7.97726226169806	8.53123873160902	7.94708711119627	0.195226455074129	0.459624348433647	0.813819730244683
Merged-chr17-84466257-4	chr17	84465782	84466782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183021)	promoter-TSS (NM_183021)	-74.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	6.94226397493876	7.3115666360567	6.98535372248748	7.10037204687592	6.96784693100983	6.4836701794572	-0.31624562127544	0.27968541715395	0.677347473156491
Merged-chr6-87002294-2	chr6	87001794	87002794	+	950.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-7542.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	3.94796857498409	3.74580206578104	3.84569227848919	3.46950296697066	3.36277721907249	3.43462383418957	-1.54018187579994	0.007204903390201	0.0798063899483286
Merged-chr1-133134461-4	chr1	133133962	133134962	+	858.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3296.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	6.46281803492584	6.46313862575634	6.11006875109503	6.09407894477841	6.42882110432203	6.07875987065933	-0.236015687520861	0.435967790285255	0.799430009957291
Merged-chr17-29615405-2	chr17	29614926	29615926	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021419, intron 1 of 7)	intron (NM_021419, intron 1 of 7)	637.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	6.45442187370476	6.39795151714959	6.40749923611251	6.22732564515777	5.91706080468171	5.98564431392196	-0.622906563489173	0.0289567835804659	0.204183953645874
Merged-chr11-20934902-4	chr11	20934413	20935413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-103805.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.50342250691469	5.53255013771515	5.81694170335745	5.61137675340351	5.88321125741032	5.50455037978753	0.136241094121468	0.686611188706869	0.916801348262875
Merged-chr12-102399876-2	chr12	102399376	102400376	+	757.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	39937.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.65433530246656	3.95142132268178	4.54889870399389	3.95292728230896	3.76481750091857	4.47040627833644	-0.0221759172863301	0.971148578019521	0.993727127580947
Merged-chr2-165969022-4	chr2	165968530	165969530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23607.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	8.00922948448027	7.42900877919345	7.58630646577986	7.80248574842292	7.61952894657804	7.20820614347728	-0.187348699797271	0.513904933174222	0.842830426324247
Merged-chr5-105293113-3	chr5	105292678	105293678	+	799.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	521.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	6.31366800133933	6.74396433791639	6.61832910134369	7.45479171255689	7.28589645623419	6.87192166502718	1.01685781887874	0.000479969326602367	0.0101847087825151
Merged-chr5-142821837-4	chr5	142821310	142822310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	6.01971101246927	6.01216768539636	6.2079603081647	6.02834160180954	6.08854836843676	6.3253833920936	0.119196571156303	0.684233975679143	0.915825160524325
Merged-chr9-108649913-4	chr9	108649408	108650408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	-500.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	7.92822907854179	8.20909053913536	7.89675718300554	7.7791163313865	8.09831142240589	7.87236345577254	-0.134955678711582	0.567068232296893	0.867742628008279
Merged-chr11-98955286-4	chr11	98954787	98955787	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5184.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.55369264173697	5.10166646680598	5.66229513153725	5.37964856104615	5.35728413158742	5.79575132729861	0.120624293349517	0.749898898828555	0.937463855381525
Merged-chr7-90023669-3	chr7	90023143	90024143	+	968.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5516.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.72469248278616	6.70425579294533	6.64878240885055	6.6876837803211	6.68108609397513	6.73961285224522	0.00876858081895142	0.972010128812102	0.993868590220018
Merged-chr17-33557272-2	chr17	33556759	33557759	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	ID_B1|SINE|B4	1552.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.11839699767128	4.90621116500244	5.11083238841922	5.17736674121933	4.49451823243405	5.38436302577402	0.037104806634848	0.934056235995217	0.985705936387336
Merged-chr8-105171575-4	chr8	105171096	105172096	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161456, intron 2 of 4)	CpG-14413	922.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	6.70654240534037	6.93448240464302	7.25962754045778	6.87181599293077	6.92952533027298	7.13521326515565	0.00156720999902455	0.995470028000749	0.998961028701257
Merged-chr5-112298827-3	chr5	112298319	112299319	+	953.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	22128.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.80055562923494	4.77132666027529	4.26737450553603	4.70017705926603	4.62020906608518	4.33876612372908	-0.186057495572747	0.688558153470233	0.9172299553909
Merged-chr7-126760268-2	chr7	126759768	126760768	+	867.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011952, intron 1 of 8)	intron (NM_011952, intron 1 of 8)	642.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.52835196250104	4.6153204724368	4.91695452403189	4.46123302054611	4.40083254673639	4.66103515118608	-0.445562166196194	0.304109473590057	0.70066014338866
Merged-chr17-5567493-2	chr17	5566993	5567993	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	74893.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.51209980449126	4.23365840201784	4.5077565702346	4.10410253550826	4.27429636803792	4.41053390065916	-0.409710509005942	0.37588319123292	0.758951282467405
Merged-chr6-15739324-4	chr6	15738843	15739843	+	862.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	18682.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.69274807592599	4.06910468802546	3.87938029497551	3.71454659369594	3.64532901638111	3.84953446832058	-0.512418446314252	0.343797439881556	0.73257256985281
Merged-chr3-95280944-2	chr3	95280444	95281444	+	894.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 1 of 7)	intron (NM_173347, intron 1 of 7)	1132.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	5.6678861172529	5.64961863281643	5.51430818137459	5.55140269892769	5.3820081296631	5.54838172847965	-0.24182658338532	0.456170682142486	0.811412174687617
Merged-chr4-136895754-6	chr4	136895196	136896196	+	943.1527710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007572)	TTS (NM_007572)	-2782.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	6.66985930364141	6.71456319512359	6.76290263039835	6.119545925367	6.29357719043997	6.58864904901278	-0.604719522418898	0.0302311825478337	0.209972974744587
Merged-chr5-33274661-4	chr5	33274186	33275186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198860, intron 1 of 9)	CpG	318.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	7.67434524105696	7.55477623854038	7.36123925596269	7.66654196633357	7.54607816674107	7.47268826086361	0.0338743553524788	0.884618624619933	0.973538624783452
Merged-chr5-139449964-2	chr5	139449464	139450464	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	10570.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	2.8852055596729	3.13696106022594	2.97748263080683	3.35177239285116	2.96919294836721	3.11290657541734	0.646006729828642	0.350277032461107	0.738319835221541
Merged-chr9-70761223-4	chr9	70760724	70761724	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	82242.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	7.62870927764455	7.86479483348817	7.63911605411336	7.78372917438999	7.98435142564771	7.54892966371146	0.107266561028993	0.658551204238299	0.905014667687917
Merged-chr12-111967004-4	chr12	111966446	111967446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361914)	promoter-TSS (NM_001361914)	63.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	6.81762805742464	7.00754925848093	6.83299046666112	6.80685938653481	7.06584014010339	6.83125597951972	0.0336656698678872	0.895335836293606	0.975665889379756
Merged-chr9-25559401-2	chr9	25558911	25559911	+	646.166626	f0_balb.idr|f0_c57.idr	intron (NM_026189, intron 3 of 7)	Lx4B|LINE|L1	77814.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.00051971005145	2.92463919349667	3.14844365391069	3.05241569981985	3.57118120924131	3.10171718571605	1.06448037559245	0.127153012270527	0.476540304702551
Merged-chr1-165764250-4	chr1	165763742	165764742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011804, intron 1 of 3)	intron (NM_011804, intron 1 of 3)	484.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	8.69805909907854	8.87952687282757	8.38957248500667	8.67478589538957	8.97945438475286	8.3774786607895	0.043180278540438	0.867309408717664	0.96931826298411
Merged-chr7-12909669-4	chr7	12909149	12910149	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001447)	TTS (NM_001001447)	11840.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	5.68355120294603	5.30142311678315	6.00544265932467	5.68229780083083	5.74608713763265	6.38089756946288	0.500948173239341	0.19892242946795	0.587343866831168
Merged-chr16-30389337-4	chr16	30388849	30389849	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-819.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	8.63482462243151	8.96456561297541	8.5342535675155	8.83804079738066	9.22328009588495	8.66787751564277	0.285892263130166	0.256487879315847	0.653552886970565
Merged-chr3-152714068-4	chr3	152713570	152714570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178016)	promoter-TSS (NM_178016)	-30.0	NM_178016	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	6.02257607523186	6.17206434445577	5.91710353702512	6.02378024804195	6.15383791612669	5.71354639943794	-0.0982300491802416	0.753340571274416	0.938549578325581
Merged-chr3-142708069-3	chr3	142707508	142708508	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173763, intron 2 of 13)	RLTR45|LTR|ERVK	6960.0	NM_001293560	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	3.07166345021558	3.08819042822682	3.38761040515912	3.25236145716902	3.38921882100538	3.17841749177686	0.407129877564305	0.528235125150187	0.850495873730805
Merged-chr4-137465344-4	chr4	137464818	137465818	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3485.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	4.50409001539491	4.39285358528735	4.08688909269406	4.41481827745739	3.88963493980847	4.15759627521219	-0.478108276581105	0.347774250320155	0.735747481116546
Merged-chr5-115281815-1	chr5	115281315	115282315	+	631.0	f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	Tigger6a|DNA|TcMar-Tigger	2113.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	6.47579638251541	5.93815040525807	5.75930857147152	6.28678364405622	5.82453965966388	5.67903971578105	-0.245047128693103	0.508566493785368	0.839818423824339
Merged-chr11-69418183-4	chr11	69417699	69418699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4524.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.92941970014373	8.93620845031932	8.53936763110033	8.88277415130378	9.13593851315166	8.32387925066615	0.0190425751386327	0.94508757278803	0.987875414328125
Merged-chr6-124478547-4	chr6	124478042	124479042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13758.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	6.68394358284615	6.6783416623003	6.26467168543236	6.63526716060379	6.61289713226452	6.30406250717689	-0.0540183128873711	0.852386609375537	0.965378390789581
Merged-chr9-35163348-4	chr9	35162799	35163799	+	841.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	12688.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	4.98933522043157	5.21808541167596	5.23701361048529	5.78690451706466	5.62222498058684	5.42889046845622	0.932549771095213	0.0075965345102913	0.0829191189206767
Merged-chr4-141673357-1	chr4	141672857	141673857	+	709.5	f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-9242.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	4.13506677744901	4.11598377122185	4.14235934675039	4.09589593969469	4.01716538387402	4.16432137370564	-0.120865424085058	0.798256755185889	0.951930937621884
Merged-chr12-59053944-2	chr12	59053444	59054444	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306217, intron 1 of 4)	intron (NM_001306217, intron 1 of 4)	7528.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	3.07486628891524	2.99367244243596	2.99940787251182	3.17151065331654	2.82561717643535	3.07247285357937	0.0161402854494712	0.981239974505553	0.995687678606673
Merged-chr1-156675691-1	chr1	156675191	156676191	+	568.0	f1_balb.idr	Intergenic	L1M2|LINE|L1	-1352.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	6.91563711257842	6.88539542797006	6.80344221324147	6.52145804552626	6.60587830762728	6.70802045952975	-0.410658461408158	0.102892231483099	0.427752025842902
Merged-chr11-103171039-4	chr11	103170539	103171539	+	997.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077698)	promoter-TSS (NM_001077698)	-99.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	4.73141830147287	4.75860795466628	4.85698222675057	4.69602870721072	4.34838617992739	4.57576949478164	-0.56983274670743	0.174489165372899	0.553733580181089
Merged-chr12-64967792-2	chr12	64967289	64968289	+	588.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	2047.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	3.90530990416824	3.68509944185779	4.08056911548097	3.81230749542695	3.88229404935137	4.01204825691755	0.028707331421001	0.956431991103715	0.989887454023164
Merged-chr1-119917125-4	chr1	119916606	119917606	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3938.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	3.38277744388096	3.32356444712362	3.49155294406476	3.22857409675018	3.52043857903277	3.22400983259658	-0.21712799330799	0.727705092132719	0.930204882969987
Merged-chr18-12808938-4	chr18	12808402	12809402	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 3 of 13)	intron (NM_001252490, intron 3 of 13)	11005.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.92998872130746	3.97417595781662	4.03119050850314	3.72660842484642	3.48795102429296	3.81104309681665	-0.995777384598901	0.0641697127625745	0.330062510690264
Merged-chr10-122576762-4	chr10	122576274	122577274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6883.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.19078757613952	6.0870666342594	5.91173369569002	6.39596299024954	6.48223588057953	6.51444196811691	0.641707894220807	0.0224806551450971	0.174460954422052
Merged-chr11-103357469-2	chr11	103356969	103357969	+	781.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	6223.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	2.57078555895338	2.67852967114628	2.72630304209283	2.76551934645712	2.74013598484459	3.14409821829968	1.20014181149331	0.113636830826722	0.450295929229846
Merged-chr11-107323999-2	chr11	107323499	107324499	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134618.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.0795649806223	6.88107014473558	6.63957236544044	6.9214568845586	7.08889497242678	6.7158897770131	0.0597860867115356	0.827596504432319	0.959481887246358
Merged-chr16-55974595-4	chr16	55974103	55975103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	14.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	9.32950646298131	9.79336975404584	9.17473360649233	8.9935528929886	9.29233165670455	9.15111350794478	-0.423309150549152	0.0843776380711384	0.384432705942249
Merged-chr5-135960518-1	chr5	135960018	135961018	+	635.5	f1_balb.idr	3' UTR (NM_001160366, exon 11 of 11)	3' UTR (NM_001160366, exon 11 of 11)	13958.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	2.57354413429866	2.63998038158117	2.86392182504292	2.72256799138382	2.74967997847502	2.75720284931526	0.272489175050843	0.713917767044739	0.925625529656531
Merged-chr16-24626781-2	chr16	24626281	24627281	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95074.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.93702692881714	7.00596760526449	6.6505141126944	6.86098247988017	7.26518304346783	6.77649395165979	0.177954850777555	0.528714931796421	0.850585575598857
Merged-chr3-59205301-4	chr3	59204793	59205793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5589.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.55191675825837	7.4794388158423	7.17326056288735	7.29899165637171	7.40322157091191	7.15419054188407	-0.183411991069054	0.459392574489565	0.813647027205785
Merged-chr1-120528241-1	chr1	120527741	120528741	+	669.0	f0_c57.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23217.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.53823240951692	4.29711642311678	4.33165065996922	5.25066942759518	4.93628646370734	4.79905116964838	1.43821445427812	0.00085147907232933	0.0158963138098225
Merged-chr2-112392917-1	chr2	112392417	112393417	+	693.0	f0_balb.idr	intron (NM_024254, intron 1 of 9)	intron (NM_024254, intron 1 of 9)	13706.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	2.99388925381976	2.94530099928165	3.18488140754798	2.93079613941408	2.91525539669082	3.25544704261456	-0.0196153544432788	0.977201460869021	0.994771164142869
Merged-chr5-130170788-4	chr5	130170284	130171284	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	6.66122120667919	7.26012992844366	6.87067397692834	6.87906416084914	6.86066433365489	6.51462417771655	-0.295327258431567	0.319671446306426	0.713586133471515
Merged-chr4-137345964-4	chr4	137345467	137346467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	11792.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	4.37137385870262	4.22414288224498	4.44557539219117	4.60947965293934	4.42082941245017	4.51247503203494	0.433701107080572	0.321991518047547	0.715384462470548
Merged-chr6-29271174-4	chr6	29270676	29271676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1312.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	7.78551860758985	8.0644217787385	7.8284498054792	7.45757030347046	7.14792228757805	7.60846541471169	-0.711793357283775	0.00438107926451048	0.0557316684668075
Merged-chr4-130809246-2	chr4	130808746	130809746	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	16709.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.06672793665976	6.0585401378821	6.13663747703567	6.24079404423267	6.46571121842419	6.43215902570397	0.501675564554971	0.0719339572748087	0.352260848010245
Merged-chr8-123287549-4	chr8	123287054	123288054	+	823.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 26 of 42)	intron (NM_016925, intron 26 of 42)	31022.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	5.38993383422923	5.079112888439	5.34429978920664	5.23809490646712	5.01568613018758	5.31701218936652	-0.17889298534269	0.625534490285089	0.892513881101067
Merged-chr16-64873969-4	chr16	64873476	64874476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21975.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	6.85569645334435	7.36609365233699	6.98824519030708	7.21655875937318	7.529763499222	6.98987651605354	0.26944482312347	0.351292367858995	0.739203786885449
Merged-chr19-6895765-4	chr19	6895261	6896261	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-13937.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	6.01557886471906	6.12687958056948	6.22554847260233	6.04492081574553	6.11061612722421	6.39776411083194	0.10834025089358	0.712857112570049	0.92531822516521
Merged-chr6-115997233-2	chr6	115996733	115997733	+	634.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2228.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.04995920717119	2.88325401957764	2.87955470255885	3.11640875439468	2.7732722294583	3.01483011159831	0.145110338541793	0.83761848728699	0.962141375366527
Merged-chr5-97082229-4	chr5	97081751	97082751	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198422, exon 7 of 7)	3' UTR (NM_198422, exon 7 of 7)	29345.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	4.68446297734411	4.53453952266047	4.48607902253717	5.09545040891209	5.15516342083461	4.68941741536989	0.979319692337315	0.0188162933782398	0.15529484059659
Merged-chr10-81087371-2	chr10	81086871	81087871	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B1_Mus2|SINE|Alu	11501.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	3.97939650934534	3.81314066580167	3.92433346039544	3.94707275302095	3.83299208047623	4.13171347130489	0.188010661305918	0.712465476359341	0.925108881697014
Merged-chr1-88296375-2	chr1	88295875	88296875	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-10337.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.53780577171966	3.74488180951942	3.99137562008088	3.59905407953943	3.48961383266238	4.22458199679496	0.126682510948301	0.837198620733073	0.962097379139264
Merged-chr4-108580260-1	chr4	108579760	108580760	+	602.0	f1_balb.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	806.0	NM_011015	18392.0	Mm.294154	NM_011015	ENSMUSG00000028587	Orc1	AA545195|MmORC1|Orc1l	origin recognition complex, subunit 1	protein-coding	3.50993944216402	3.49202002021816	3.20356511985578	3.40411208204045	3.51202954933195	3.45503443746081	0.159125904967848	0.79327011854963	0.950312844775479
Merged-chr14-65902970-3	chr14	65902469	65903469	+	808.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50775.0	NM_172604	219151.0	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	2.41940449765154	2.42230700163817	2.38259474728529	2.69719721014707	2.46966506550362	2.77627211729578	1.43828617949923	0.0784769695983462	1
Merged-chr11-29801958-4	chr11	29801445	29802445	+	893.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 21 of 41)	MLT1E1A|LTR|ERVL-MaLR	23723.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.48349040903561	5.13224865700129	4.83910052243939	4.77041846307235	4.66646796843618	4.58491268152694	-0.394096065786544	0.371902648866779	0.755850506995602
Merged-chr4-123930218-2	chr4	123929718	123930718	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 6 of 6)	intron (NM_017475, intron 6 of 6)	12785.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	4.89353528042685	4.84130991309077	5.11535748740953	4.8987635586187	4.89517399099214	4.94258269387162	-0.077193091191646	0.839580722395896	0.962784121274377
Merged-chr16-36669707-4	chr16	36669198	36670198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3621.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.49132139877914	6.43352302541554	6.05330849514374	6.79079359968447	6.93413454786619	6.44362533012082	0.634007899061394	0.0350980997491407	0.2298837125257
Merged-chr4-129803584-4	chr4	129803092	129804092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16887.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.99704010573758	7.27659255228499	7.067692783511	6.93650026037593	7.11212700000187	6.48972237956725	-0.357831319581699	0.210956182859681	0.603297566953529
Merged-chr5-150243172-2	chr5	150242672	150243672	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16758.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	3.32810242899362	3.27668452737006	3.35161225581035	3.71176678804066	3.63611457906446	3.98275545377551	1.68521261107944	0.00449629808125145	0.0568018031456998
Merged-chr5-123620231-4	chr5	123619729	123620729	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 12 of 18)	intron (NM_001359224, intron 12 of 18)	-47214.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	5.42081117983186	5.23637827748001	5.30767945269391	6.03051092324387	5.88697455114234	5.99235946901359	1.18992257314764	0.000195614689990641	0.00492347768015991
Merged-chr12-69892659-1	chr12	69892159	69893159	+	982.0	f0_balb.idr	promoter-TSS (NM_178628)	promoter-TSS (NM_178628)	-446.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	6.54201644576661	6.50344936305033	6.20111605336111	6.26092995171716	5.91173371773732	6.28222453050805	-0.465122798662575	0.12041696694809	0.464017466660372
Merged-chr2-127247825-4	chr2	127247316	127248316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	0.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	7.93325236388756	8.05571621456981	7.60370474453576	7.87644754486251	7.9073967596048	7.46185169539298	-0.161729530848208	0.530937726171312	0.851363932161699
Merged-chr11-89081413-4	chr11	89080910	89081910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	L2|LINE|L2	7569.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	4.39804647466481	4.28938119976445	4.12569350655297	4.02189597965109	3.94638938186902	4.1470157038259	-0.704184512870816	0.141869328021091	0.502839625403773
Merged-chr7-63932615-2	chr7	63932115	63933115	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	ORR1A2|LTR|ERVL-MaLR	6300.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.49432655424635	3.51472259630936	3.62225014756238	3.52740042504467	3.738158107261	3.69178923184469	0.412040261132733	0.460159112244218	0.814270337828624
Merged-chr19-17345065-4	chr19	17344539	17345539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-5534.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.64375823676819	5.61594796295421	5.15999136316653	5.39121532947207	5.41881563502197	5.75879016822076	0.0386472544012984	0.915356411977767	0.980959026698783
Merged-chr11-101069997-4	chr11	101069516	101070516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013792)	promoter-TSS (NM_013792)	-78.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	7.93921811756034	7.93705672481922	7.26905860883601	7.50946681980747	7.58344651861694	6.85026454832805	-0.572741036258457	0.0728502740158796	0.35460268947482
Merged-chr7-129398905-3	chr7	129398413	129399413	+	802.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	141819.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	3.22627026751078	3.08630394084646	3.33279071059762	3.28928219916259	3.17830156710885	3.23617283834397	0.0838631414715585	0.893828545338823	0.975280227461205
Merged-chr2-101795729-2	chr2	101795229	101796229	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1978.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.29342859909383	4.6843802818213	4.41646973866855	5.01407089870328	5.00153436639317	4.5776681072061	0.950877238190064	0.0323971172183926	0.218771248945626
Merged-chr7-47055975-4	chr7	47055491	47056491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5351.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	7.70942782787122	7.83002957780971	7.5415002589712	7.60529507073326	7.71891279057915	6.95318192844891	-0.322198836917884	0.261954629205215	0.659805765409285
Merged-chr16-18733745-4	chr16	18733256	18734256	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-43091.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	4.97750855029435	4.65851669738778	4.62925590705827	4.65401545689561	4.55372849839955	4.06345751341268	-0.741755870219453	0.12360717379181	0.470544707581506
Merged-chr13-41381624-4	chr13	41381134	41382134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-22633.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.26512279069893	4.27534346765165	4.46387356170573	4.0629298600683	4.20265914782659	4.03874870831902	-0.609259616284932	0.196480248644615	0.584300519271662
Merged-chr10-88337201-2	chr10	88336701	88337701	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 3 of 6)	URR1B|DNA|hAT-Charlie	19874.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	7.07880928920775	6.80901048757665	7.18178833273972	7.36989867813181	7.41652310294469	7.31983800699074	0.518617345997601	0.0350800636350058	0.229854013269365
Merged-chr10-121598507-2	chr10	121598003	121599003	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-11709.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	3.32150185703852	3.17806233130711	3.33242815542149	3.69348193365506	3.64803898833687	3.46326532364244	1.27279089776627	0.0333754149898239	0.222961114688827
Merged-chr11-100938836-3	chr11	100938331	100939331	+	888.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	709.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	8.84067117725056	9.05390310379325	8.26288204096933	8.79019957196505	9.17949416928698	8.77143154568319	0.223425267321426	0.419417425363523	0.789006446666644
Merged-chr3-103211726-1	chr3	103211226	103212226	+	542.0	f1_c57bl6.idr	Intergenic	Intergenic	40071.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	3.00803454551679	3.19201128746514	3.63136363995254	3.65736244404478	3.85332338299002	3.48873947365774	1.41451060224712	0.0368710601276535	0.236634055530042
Merged-chr14-47348716-4	chr14	47348181	47349181	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-25179.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.15149845328671	5.00014452974139	5.54487724114237	5.15849224724213	5.13667806907982	4.96030475675277	-0.300807957063251	0.4373025711246	0.799891675931759
Merged-chr13-65097240-4	chr13	65096748	65097748	+	909.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	ORR1D2-int|LTR|ERVL-MaLR	15734.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	3.85728298775397	3.80676243935854	3.73712575955108	3.68578293934752	3.75902364523718	4.09401196894299	0.14459419284174	0.787774690147469	0.94877064431094
Merged-chr13-34991696-4	chr13	34991197	34992197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110331, intron 2 of 9)	MER77B|LTR|ERVL	2447.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	5.36281688124555	5.03572231614742	5.13889255458352	5.13602417794766	5.11133805678211	5.4190409228202	0.0627176367645882	0.865538648478573	0.968641478520565
Merged-chr1-131867916-3	chr1	131867396	131868396	+	932.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144875, intron 2 of 5)	intron (NM_144875, intron 2 of 5)	619.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	7.01398517481404	7.05068111256744	6.48196284487949	6.74877975064255	6.8074249192511	6.76838027664651	-0.172469784938985	0.539334490730156	0.855849474290651
Merged-chr6-128803243-4	chr6	128802717	128803717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14576.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	5.44081120746499	4.94153175558197	4.85494304717032	5.13920425396737	5.26499814575212	5.34085134337472	0.26809397579656	0.499710901854861	0.834687375989398
Merged-chr5-93198400-4	chr5	93197882	93198882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	8113.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.58528422819488	5.88076380432138	5.70578388670885	5.66981526348377	5.92998392399564	5.84432514399588	0.162029327960819	0.611546080106863	0.886146894079858
Merged-chr4-135947943-3	chr4	135947441	135948441	+	903.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	535.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	6.49798149477825	6.53147079362076	6.39596625402667	6.147052072592	6.23648501792385	6.1746535013868	-0.482404300366214	0.0748595068787789	0.360171937408491
Merged-chr7-109751452-2	chr7	109750952	109751952	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020050, intron 1 of 4)	intron (NM_020050, intron 1 of 4)	811.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	5.5036200558298	5.49717200578946	5.31062713166065	5.18889070025373	5.55376066775171	5.31004004748992	-0.14761542880585	0.674173445337867	0.911841916826811
Merged-chr5-139794421-2	chr5	139793921	139794921	+	684.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	PB1D7|SINE|Alu	2885.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	4.33991119568037	4.32895193919076	4.44593226562065	4.15548743169297	4.52825680067564	4.0472119668011	-0.244467850840949	0.613727525445676	0.887300906025089
Merged-chr1-74375147-4	chr1	74374649	74375649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-54.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	8.33896519237033	7.89608574483143	7.87449537765026	8.13326081139894	8.17842566638059	7.84698744908515	0.00842090494410879	0.973277243183278	0.994013566033857
Merged-chr7-64349853-3	chr7	64349362	64350362	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 11 of 13)	intron (NM_177893, intron 11 of 13)	24233.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	4.18086922901053	4.47921355568241	4.69989973077042	4.38247286366299	4.33418591019964	4.41665065514014	-0.22084703035961	0.63206596522055	0.895435008062156
Merged-chr1-134304852-4	chr1	134304349	134305349	+	948.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	14845.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	6.3546128615126	6.46230400555011	6.58315554162132	6.46268820601714	6.42164153826459	6.6739444134931	0.0837931491224012	0.757355525786545	0.939861209437025
Merged-chr9-95497104-4	chr9	95496552	95497552	+	874.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 2 of 25)	Lx9|LINE|L1	14944.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	5.37981577547819	5.41635693092025	5.2109245660572	5.65865400564335	5.63968540879872	5.43926126623184	0.465060739660188	0.165440663691179	0.540457255090716
Merged-chr14-25463099-3	chr14	25462522	25463522	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	3837.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.96130277563907	3.97300251607746	4.26492045716624	3.36644341723375	3.21217814364231	3.40973005866815	-2.79218736785768	9.12628458723333e-06	0.000369707832490025
Merged-chr18-35748478-4	chr18	35747992	35748992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-7938.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.63016201701179	5.58004495919182	5.77474851471332	5.63860192095997	5.5061918468455	6.07921771342133	0.167979198812284	0.625314809778479	0.89246806537449
Merged-chr3-90036360-2	chr3	90035860	90036860	+	885.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165987, intron 6 of 24)	B3|SINE|B2	-15276.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	2.9355216927232	3.10001422127283	3.17237357006802	2.97502304329719	3.12670598666651	3.24327058332066	0.208006464603973	0.754290574236241	0.938849233385426
Merged-chr12-3820803-4	chr12	3820307	3821307	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	13647.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.21867709898616	4.18517486480414	4.19585961736183	4.66475780235189	4.73864497392043	4.40749495968137	1.08150427138674	0.0150868333943738	0.133286359727627
Merged-chr4-57949706-2	chr4	57949206	57950206	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6705.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.37023591219026	5.62351073741399	6.00751442410668	5.85109798816532	5.7569952173154	6.22571896423116	0.482179056289984	0.177617907325593	0.558706727133464
Merged-chr7-128745981-2	chr7	128745476	128746476	+	852.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	intron (NM_001029982, intron 1 of 18)	1106.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	3.87187740346557	3.27204066452146	3.59713616584997	3.70490015565797	3.40991585164297	3.96306595525716	0.338512030027181	0.594889805585015	0.87924603206665
Merged-chr13-34037645-4	chr13	34037145	34038145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026512)	promoter-TSS (NM_026512)	4.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	5.1973123469955	5.43347456694287	5.40816078220578	5.17579663028015	4.9582178194581	4.97994284808635	-0.631003538145025	0.0818970184861979	0.378582617455531
Merged-chr1-164153024-4	chr1	164152524	164153524	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037987)	promoter-TSS (NR_037987)	-807.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	2.42477169779147	2.51504727787046	2.60674079457766	2.53030511303296	2.41040991366015	2.42632713649392	-0.356496001947863	0.654534314716271	1
Merged-chr9-21152865-4	chr9	21152344	21153344	+	900.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.13641633524173	3.08143341302475	3.03635758772747	3.00294470904034	3.04028106294781	3.10856178853502	-0.171618389863272	0.792847372065093	0.950074082415857
Merged-chr4-123918547-2	chr4	123918089	123919089	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	intron (NM_017475, intron 1 of 6)	1156.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.14059031898476	6.92844676057346	6.96016240323564	7.04805548345648	6.89474309019456	6.84468365405496	-0.124586498714769	0.616501531619198	0.888382305092742
Merged-chr2-114622726-4	chr2	114622226	114623226	+	796.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	32238.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	2.76599946409981	3.24583644980167	3.0785191558977	3.12885876890312	3.29169820379184	3.20991316278225	0.704531547237122	0.323384262726503	0.71668986599242
Merged-chr5-120612686-1	chr5	120612186	120613186	+	1000.0	f0_c57.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-97.0	NM_133908	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	8.21070924452956	8.17644444209824	7.69953256247914	8.13590673906388	8.14580116092213	7.70852687368033	-0.053539303587374	0.838488328690071	0.962518552953479
Merged-chr6-50560976-2	chr6	50560476	50561476	+	969.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5498.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	3.58103099435693	3.49358586911909	3.67955910115118	4.05829618329548	4.06843940598837	4.05214506927266	1.56878342107307	0.00303129706183682	0.0424445736912539
Merged-chr9-95562204-7	chr9	95561608	95562608	+	740.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198414)	TTS (NM_198414)	2291.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.95403429864261	7.33330639835485	7.06184261211187	7.56986818442125	7.7368962575347	7.28415516778558	0.622571862653581	0.0181400238250546	0.151667514312213
Merged-chr6-51469399-4	chr6	51468919	51469919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	CpG	475.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	8.31721572904832	8.80725057090185	8.31122279690614	8.30262837885554	8.52131253727707	8.40269558256652	-0.128635845284864	0.596716780124062	0.880046639147099
Merged-chr7-90041779-4	chr7	90041280	90042280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	12621.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.10156470907203	7.94837169947293	7.84971098683071	8.08198434580034	8.08361148207869	7.73162557118055	0.0123370770510527	0.957732722546742	0.989969855526119
Merged-chr19-40998687-4	chr19	40998193	40999193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4158.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	6.19033517519275	6.50791369176079	6.15642126812256	5.87406458518184	5.8518283459454	5.6719517219292	-0.847108267975494	0.00565992440383786	0.0668528883319275
Merged-chr15-101976168-4	chr15	101975668	101976668	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21881.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	7.12690904342038	7.19816274613499	7.69387402918259	7.56986966517505	7.41125226284455	7.57406827792443	0.23815894449723	0.369674089636209	0.754293515829679
Merged-chr2-11534981-4	chr2	11534461	11535461	+	877.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	18968.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	7.16883410237327	7.39436335711944	7.14445216578063	7.23100393152169	7.24459964323998	6.7689996355269	-0.200373409348184	0.453147889678691	0.809675535403562
Merged-chr13-49306946-4	chr13	49306443	49307443	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	2265.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	6.56436836054993	6.58570169191012	6.33818551850126	6.36206893549643	6.61977588510297	6.58188329310804	0.0304038145718828	0.911440506077758	0.980098870307889
Merged-chr7-27436924-2	chr7	27436425	27437425	+	729.5	f0_balb.idr|f1_balb.idr	intron (NM_032610, intron 2 of 35)	intron (NM_032610, intron 2 of 35)	9664.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	2.73862396438372	2.83500004877147	3.023073542444	2.51057161485887	2.38252389285618	2.74868256122726	-1.8601812329874	0.0261532053004873	0.192011630221425
Merged-chr10-80659295-2	chr10	80658795	80659795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2224.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	2.5978277816063	2.81859246304242	2.74774260954613	2.91226696451068	2.80925640886697	2.88307723157604	0.731646741678746	0.315871129895351	0.710103428795101
Merged-chr7-90482872-4	chr7	90482373	90483373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6878.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	5.08655273688235	4.98837631327712	4.38671614837829	4.76462768540612	4.62382665622726	4.30448962778315	-0.64592190576291	0.17634197418743	0.556535671844783
Merged-chr11-115047927-1	chr11	115047427	115048427	+	619.0	f0_balb.idr	intron (NM_199201, intron 1 of 3).2	ID_B1|SINE|B4	368.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	7.79587528108626	7.89263897113209	7.46195282622708	7.16227881614598	7.18413692335441	6.78072887710801	-0.98740856202614	0.00019453135401114	0.00490056460931243
Merged-chr5-24597550-4	chr5	24597050	24598050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025891, intron 2 of 12)	intron (NM_025891, intron 2 of 12)	4452.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	3.90096159914819	4.2464841929329	4.58472748144481	4.13854543244676	4.17587351526882	4.33761625886103	-0.130256432356786	0.798325965638748	0.951930937621884
Merged-chr6-17599550-1	chr6	17599050	17600050	+	540.0	f1_c57bl6.idr	Intergenic	Intergenic	-37460.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.28367076626187	3.47534160752968	3.37167327624939	3.41581930349503	3.24035425567326	3.27091117199139	-0.276025625277998	0.650267594657525	0.902576889668442
Merged-chr19-47447592-2	chr19	47447092	47448092	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	L1MB8|LINE|L1	16819.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.82478406801999	6.50903280717654	6.55476063568278	6.47395641241388	6.25421218144496	6.16618906452107	-0.54352384867025	0.0558501388557208	0.304313951536036
Merged-chr11-44410686-4	chr11	44410184	44411184	+	747.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 5 of 7)	intron (NM_001303244, intron 5 of 7)	10621.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.7819120849367	3.49394152423942	3.93897189234738	3.86928444713866	3.75790377049249	4.09701235305479	0.524021945001509	0.345024430628666	0.733564820721331
Merged-chr17-55752598-4	chr17	55752099	55753099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	2615.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	7.12957998711549	6.97559893309963	7.12134165147177	6.73397783888665	6.93649632560523	7.06703616586766	-0.243493508344748	0.332951743968254	0.723927708416112
Merged-chr19-53312012-5	chr19	53311533	53312533	+	914.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	588.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.95483696753055	6.94117208944763	6.90014176516337	6.75787681608727	6.79826699821201	7.16372300443401	-0.0359961473227004	0.890012225923858	0.974360328989611
Merged-chr5-122049950-2	chr5	122049450	122050450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-99.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	4.94051024481766	4.31114757906269	4.25499372250134	4.09678553516209	3.92577460390431	4.12924289208296	-1.34398356419462	0.00891448502463002	0.092928648199626
Merged-chr11-97826682-4	chr11	97826211	97827211	+	968.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-14069.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	4.90226955584158	4.58944981278922	4.19070634315187	4.68227951610022	4.26920407431546	4.67102524331401	-0.126249471205148	0.797228885999016	0.951678829711438
Merged-chr14-62120480-3	chr14	62119981	62120981	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172498.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.07257352842326	3.64074771455489	3.8778744466104	3.36399310426997	3.58019859054843	3.52909773368461	-1.29739750734634	0.0273498925682752	0.197084079052658
Merged-chr17-28511227-4	chr17	28510697	28511697	+	852.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19664.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	5.38809871107126	5.07373108283478	4.72687575881818	4.83116566855995	4.71123329156334	4.95214474634025	-0.5949958465662	0.152625101320674	0.520882221020083
Merged-chr12-84178260-2	chr12	84177760	84178760	+	829.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	15755.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.27591729278214	4.91468130515142	5.41240241736981	5.67412321002198	5.30429246545351	5.559222015174	0.606543752757609	0.104321249840311	0.430894145282331
Merged-chr9-44235012-4	chr9	44234500	44235500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-954.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	6.66703860072654	6.82126973223458	6.594368025639	6.87939160218669	7.22070190058976	6.72185555523267	0.414161251317932	0.13446352010012	0.490248031745282
Merged-chr1-170365487-2	chr1	170364987	170365987	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	56626.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	5.44351843932143	5.65415521158387	5.90068290678344	5.51295382727409	5.86431980204498	5.40126012030129	-0.0891122885456581	0.802402560538916	0.953198534492307
Merged-chr2-167492413-4	chr2	167491916	167492916	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-229.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	8.03347459472512	8.08354797864359	7.96323770856476	7.95153391487213	7.78339996311846	7.51186796857704	-0.373129932747101	0.108733562030883	0.440548087699158
Merged-chr2-167701650-4	chr2	167701152	167702152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10475.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.37280379380438	7.3173586292932	7.53865505253629	7.11934258001019	7.3287939947237	6.95804812351147	-0.37723660654085	0.130246515003362	0.482488638817572
Merged-chr6-122600933-4	chr6	122600411	122601411	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 1 of 7)	intron (NM_001134391, intron 1 of 7)	1533.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.18030406225024	7.15345469596153	6.91044162973266	7.74870564578785	7.93306521589619	7.66711949086083	1.02319936107726	2.05001157391405e-05	0.000745530432876923
Merged-chr6-29618377-2	chr6	29617877	29618877	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-8528.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.54182148061541	2.95194820516987	3.29524385274261	2.93889575689468	3.06772691481337	3.2553543749073	-0.820704442059965	0.24609695233929	0.643210051835899
Merged-chr17-3149661-4	chr17	3149180	3150180	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	MTC|LTR|ERVL-MaLR	34708.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	4.03993388787046	4.05756148855083	4.04871016253381	4.29615037480461	4.32132681503396	4.34810364452988	0.758501450884676	0.100690463914483	0.423286414777412
Merged-chr10-6717749-4	chr10	6717275	6718275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-40818.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	6.5366304028389	6.37301709314381	6.42080676344978	6.55817627450002	6.58310449340449	6.12563875001308	0.0092930037003608	0.974311234013217	0.994276686350905
Merged-chr9-22226554-4	chr9	22226079	22227079	+	846.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	B2_Mm2|SINE|B2	867.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	5.70295680989072	5.73129911874199	5.46923036097645	6.16826182367505	6.52875738139983	6.18204453865224	1.15010181374403	0.000267630539295224	0.00634987223087453
Merged-chr2-25023340-2	chr2	25022840	25023840	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	L1MDa|LINE|L1	-31039.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	2.54118834119748	2.46977956001708	2.85494942030214	2.60772648028575	2.52344040291723	2.81200439473833	0.121050235851321	0.878480849776962	0.971925535382153
Merged-chr5-117363273-4	chr5	117362755	117363755	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	5950.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	6.16546277625503	6.00228191459182	6.10508315699657	5.71902791094506	5.48147092347235	5.57323030031473	-0.895358900720757	0.00362989531336297	0.0484653930093559
Merged-chr13-60664917-1	chr13	60664417	60665417	+	634.0	f1_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	62706.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.27411051698093	3.61491296997545	4.03710357263703	3.19349780795505	3.22235374421512	3.84807821810999	-0.755791196435139	0.282682661290709	0.680597768538116
Merged-chr9-88404324-4	chr9	88403805	88404805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172926, exon 12 of 28)	exon (NM_172926, exon 12 of 28)	34646.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	5.42047348086603	5.59354057898498	5.72823152727148	5.69755507177248	5.68998337938664	5.51777452179272	0.120634118295263	0.711497743128387	0.924661173262022
Merged-chr1-107582471-2	chr1	107581971	107582971	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-7535.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	3.34775273540154	3.20038658227461	3.81494547461758	3.30365675661189	3.04932523193582	3.39615271507328	-0.852691482661133	0.203421161592356	0.593383628879117
Merged-chr1-155087118-3	chr1	155086625	155087625	+	961.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3861.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.33705300929729	3.22576988943144	3.44215831172154	3.38269847511164	3.23220408502834	3.17391614377744	-0.266424250688046	0.667580912411207	0.90879890451381
Merged-chr11-100378663-4	chr11	100378162	100379162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 7 of 13)	intron (NM_010593, intron 7 of 13)	19128.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	6.54053257646197	6.30546159025223	6.39633348321167	6.48455399854689	6.6311631598725	6.41811383706435	0.166842727520865	0.539765545363746	0.856101778403922
Merged-chr10-87858214-4	chr10	87857733	87858733	+	877.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	-32.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.54663948696566	6.65171552060991	6.52109803157803	6.8891967874146	7.07441980494053	6.38719083234046	0.397096683721728	0.179258156125456	0.560780311857825
Merged-chr12-83706107-3	chr12	83705596	83706596	+	841.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	intron (NM_001362271, intron 3 of 11)	17533.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	4.75359683656134	5.12121269108611	5.13333323729739	5.18769861044216	4.8730791437381	5.02908254295541	0.0471006369014008	0.904821733986595	0.978165789675139
Merged-chr8-115522704-4	chr8	115522206	115523206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184188.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.70528845697908	3.63895573309101	3.83382867776435	3.84861928347157	3.64797450676893	3.80365189469766	0.139704681100891	0.794087989708553	0.950561052169434
Merged-chr14-55557242-4	chr14	55556797	55557797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	7.21927536675005	7.80669428088282	7.3132759205751	7.25469935239012	7.77233957447051	7.46890884006199	0.0615007445746052	0.831539345500452	0.960464332375456
Merged-chr17-45583786-1	chr17	45583286	45584286	+	575.0	f0_c57.idr	Intergenic	B3|SINE|B2	8607.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	7.32915372688084	7.54219679415004	7.21097509882917	7.61654878466848	8.18224640617773	7.47715583765308	0.630301667872132	0.0268879749905074	0.195277952861241
Merged-chr7-90150516-4	chr7	90150023	90151023	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	20310.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	3.70738636765005	4.1544346585691	3.85725867154417	3.93138379142961	3.9125979774121	3.92729752541461	-0.00898732385769435	0.986450331359329	0.997046485784555
Merged-chr8-13160094-2	chr8	13159594	13160594	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	933.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	8.31445209471123	8.80611488787587	8.25149758023607	8.61055421433394	8.85302368435761	8.39483574094821	0.207030942308472	0.426291997708073	0.793775990271191
Merged-chr13-24713746-4	chr13	24713248	24714248	+	835.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029679, exon 17 of 23)	exon (NM_029679, exon 17 of 23)	48189.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	2.45394981138148	2.41472298409399	2.62582087193408	2.39522602405584	2.27918242567219	2.45118863212305	-0.788257556054722	0.337592186338236	1
Merged-chr16-21719893-4	chr16	21719415	21720415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25250.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.46664843868734	3.15525244146349	3.20443368907742	3.1069736444219	3.0656697400066	3.21853684693488	-0.668435926509179	0.302693501304053	0.699306599151639
Merged-chr6-115624248-2	chr6	115623748	115624748	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 10 of 16)	intron (NM_029780, intron 10 of 16)	22310.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	3.42534311414295	3.11269258849621	3.09904166607483	3.06224040036547	2.94325653916664	3.23033715865697	-0.638699446540369	0.343936201798989	0.732645864957409
Merged-chr5-67841673-2	chr5	67841173	67842173	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	5758.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	2.9049176164418	3.18160843905487	3.31652123709394	3.27339058775198	3.20770503363566	3.33303446022995	0.540942472212053	0.412316074899289	0.784428320958084
Merged-chr6-90717038-2	chr6	90716538	90717538	+	654.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134383)	promoter-TSS (NM_001134383)	-509.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	3.88102286895783	4.16744136909341	4.10644945855443	3.97759769591753	3.81029925014521	3.66234980202418	-0.700464202701165	0.184745462049968	0.568607375855511
Merged-chr2-157417433-2	chr2	157416933	157417933	+	739.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6860.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.18658756258983	2.12169769180731	2.20606559004206	2.32735879233915	2.21194640448313	2.41124598222834	1.01639135876356	0.240596670679216	1
Merged-chr9-13563679-4	chr9	13563174	13564174	+	932.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	2.54054989394997	2.46257585502443	2.70779324892464	2.18461335299635	2.18244694131747	2.66340611464435	-1.31870547730596	0.161771385597663	1
Merged-chr8-72183998-4	chr8	72183508	72184508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5660.0	NM_197944	209488.0	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	4.34734954662811	4.16359200522589	4.46526041683374	4.1344846388163	4.02768824399555	4.19365148313745	-0.586500987630835	0.213664477549879	0.606798656881475
Merged-chr11-72547393-4	chr11	72546895	72547895	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029932, intron 1 of 11)	intron (NM_029932, intron 1 of 11)	2851.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	2.8212366063134	2.74357163743393	2.69733627828361	2.73652751745547	2.57861728396448	2.83264409885666	-0.22632721781486	0.760417737115246	0.940748149958152
Merged-chr2-91876972-2	chr2	91876472	91877472	+	871.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080754, intron 13 of 18)	intron (NM_001080754, intron 13 of 18)	-45217.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	4.94112996275151	4.89153444343709	5.02732048499277	5.32273622135134	5.3510272209112	5.22776764162592	0.742847949070019	0.0371044430261502	0.23769488516603
Merged-chr5-88601432-4	chr5	88600929	88601929	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289777, intron 3 of 14)	Tigger7|DNA|TcMar-Tigger	17916.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	4.7560256143131	4.79234989746229	4.78239772245984	4.91777692087998	5.12941467141494	4.64240757460642	0.335588854334907	0.408349086810878	0.781982251625038
Merged-chr15-80445086-3	chr15	80444608	80445608	+	976.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6505.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	3.35391596336474	3.63237352759433	3.45965380368239	4.49425424393769	4.23454374657097	4.04455764775983	2.55139140048479	1.6396493857854e-05	0.000615112471111052
Merged-chr8-106499561-2	chr8	106499061	106500061	+	594.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11291.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	5.34049703690571	5.00281249689889	5.49861551211285	5.14332925348123	5.15036863262789	5.42310320825298	-0.10077334514768	0.78868618115301	0.94895503373255
Merged-chr18-34507412-4	chr18	34506914	34507914	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-591.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	7.57149458101985	7.60126373849551	7.35828056934111	7.1050417118805	7.15635972725028	6.73371245851024	-0.737651560065721	0.00411055504030769	0.0530198517739765
Merged-chr10-39774670-4	chr10	39774168	39775168	+	958.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	42508.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	3.33109829977505	3.16463881901619	3.21514315486691	3.11651101153855	3.07410411963094	3.39635889074735	-0.18371829716323	0.775205612808864	0.944594834759211
Merged-chr6-84754377-2	chr6	84753877	84754877	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-160469.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.25899101654866	4.04893494268737	4.3798290205299	3.94409011040223	4.43156022290337	4.18379071671777	-0.0533994296957362	0.915208422286755	0.980959026698783
Merged-chr1-165672693-4	chr1	165672186	165673186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	MLTR11B|LTR|ERVK	35408.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.93979447603639	5.3865609213275	5.83323580494428	5.96127504051928	5.94548736726351	5.87027626957438	0.338452179758274	0.310990665208563	0.706228303558147
Merged-chr8-35625874-4	chr8	35625397	35626397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36877.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.19532670510944	4.99170035623044	5.18529055490288	5.83164550798122	5.83300432524699	5.44676003957564	1.16800965590172	0.000809938490071077	0.0153131928838523
Merged-chr15-78309992-2	chr15	78309492	78310492	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4271.0	NM_001287389	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	2.96782082730158	2.8559427453662	3.05793495404072	2.70618288030413	2.62046211665247	3.07372012742533	-0.756534212310839	0.314590158231685	0.708946128054113
Merged-chr8-68999506-4	chr8	68999021	69000021	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-89215.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.63834305288846	5.18237201844142	5.55610408267981	5.99928205634353	5.99864015650122	5.78235681987269	0.852164399337795	0.011340354189419	0.109964828270968
Merged-chr12-108906985-3	chr12	108906478	108907478	+	938.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	12706.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	2.78600844993064	2.98363203687599	3.18089845306263	2.72188972279455	2.69743968241258	3.03316564683561	-0.823088815156771	0.268765904133844	0.665965177167973
Merged-chr3-38105687-4	chr3	38105192	38106192	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102427.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.86616204720199	3.87459300025478	3.84866267987673	3.79501410913031	3.50312008138106	3.7126809585628	-0.641265755031193	0.234851898533448	0.630984339781408
Merged-chr6-37419305-4	chr6	37418808	37419808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22840.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.81997819316252	7.0099218990673	7.07927486564331	7.01478903697053	7.28694576661365	6.86073123784746	0.162484129923516	0.537774857080153	0.854818238063792
Merged-chr1-144312778-4	chr1	144312296	144313296	+	902.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-63692.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.054492672494	5.98962168226357	6.01289651641965	6.08892577422742	6.07294464829187	6.11798008748791	0.124132800328397	0.661664893106423	0.906495637422278
Merged-chr11-117970054-4	chr11	117969550	117970550	+	914.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007707)	promoter-TSS (NM_007707)	-684.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	5.05408544633292	4.96187280638782	4.8341643049947	4.90691278003299	4.74071628715928	4.65772762806516	-0.411692964862081	0.294281502869549	0.690988946320778
Merged-chr3-108855567-4	chr3	108855029	108856029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15027.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.79984060974129	6.30662623441993	5.83531218302687	6.98647569252381	6.84306862423092	6.42754533763138	0.619009341512324	0.0874321283822201	0.392038181733458
Merged-chr1-16519877-4	chr1	16519352	16520352	+	921.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025303)	promoter-TSS (NM_025303)	-550.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	3.82388093500241	3.33065546572865	3.36790493402368	3.48865572265529	2.81057173020126	3.19969764501494	-1.26146132522681	0.101966603782897	0.425904179888925
Merged-chr6-22452415-2	chr6	22451915	22452915	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-96334.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.19544302248772	3.28465221893842	3.34494545565196	3.39112591472646	3.16487398167891	3.46950919130142	0.269449454039932	0.663732085085812	0.907297356021587
Merged-chr4-115823712-1	chr4	115823212	115824212	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-4380.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	2.81108968278972	2.86024208647154	3.01792380683006	3.57017538584606	3.4065009338479	3.60193435063139	3.00604954562974	4.40308267096812e-05	0.00142059597861929
Merged-chr6-4748726-2	chr6	4748226	4749226	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040611, intron 1 of 1)	intron (NM_001040611, intron 1 of 1)	1420.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	1.91629379590078	1.81559449888735	2.04191286804286	1.77736831005651	1.7194287806296	1.77973379128827	-1.54894848050596	0.133896948372525	1
Merged-chr17-87530646-4	chr17	87530259	87531259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83824.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	3.05581581421593	3.03697756768324	3.13592635676658	3.35130893127952	3.10038004531288	3.02672849458847	0.411352435358008	0.532287934205954	0.851971173271146
Merged-chr16-23135978-4	chr16	23135470	23136470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8240.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	5.73433980525535	5.83637225279971	6.13302747776899	6.15965772903937	6.04316261481644	5.77285888995605	0.188672987068443	0.554039956073278	0.862575362378324
Merged-chr17-47009112-3	chr17	47008585	47009585	+	769.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	1447.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	5.95797723809363	5.76769364047482	5.70476349923979	5.66211390832608	5.58873199041823	5.60155729845941	-0.37070572737349	0.237614935516079	0.634122003684586
Merged-chr5-29734926-4	chr5	29734308	29735308	+	883.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_028426)	TTS (NR_028426)	-1090.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	6.46802540321132	6.64068145867816	6.45993187386143	6.43110567362232	6.35640637540073	6.28748987025552	-0.271928372242011	0.311047821004957	0.70630026989904
Merged-chr2-102894863-4	chr2	102894391	102895391	+	831.4345089999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	6774.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.9713709728957	4.6209646580185	5.01303685227873	5.00128009863302	4.79704122845811	4.78679903037781	-0.0166053410040401	0.967308869853371	0.992555129128888
Merged-chr1-134785100-4	chr1	134784584	134785584	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	18637.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	5.31570679771968	5.02959652159873	5.16524898878684	5.143164586895	4.76942961830955	5.35157744603559	-0.164690933790336	0.678149196993047	0.913360932071826
Merged-chr5-120502713-2	chr5	120502213	120503213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	910.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	6.68925703430209	6.84464666329847	6.72825779888544	7.20662154576945	7.25800364263223	6.68696833074391	0.505776924037693	0.0687972900680587	0.343132824550922
Merged-chr13-112507017-4	chr13	112506526	112507526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010560)	TTS (NM_010560)	42956.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.7662751443444	5.03691812215361	5.30403569790116	4.9378633848875	4.91847855829387	5.05699532590099	-0.161108665935771	0.683925643816498	0.915583379787357
Merged-chr1-91068028-3	chr1	91067535	91068535	+	562.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	14591.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.13277739949679	2.79205315249957	2.67619450279801	3.03990924737461	2.95506303991849	3.13027199609368	0.716332432831677	0.343738739912639	0.732572352000629
Merged-chr19-43510127-1	chr19	43509627	43510627	+	668.5	f1_balb.idr	intron (NM_010324, intron 2 of 8)	B3A|SINE|B2	14478.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	3.98076320344987	4.10444333103754	4.42345962652385	3.76227688016008	3.70129150960404	3.66097150311956	-1.4381099770428	0.00755058804935958	0.0825788196542018
Merged-chr10-96623403-4	chr10	96622916	96623916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007569)	TTS (NM_007569)	6415.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.18398970180658	3.96349884611334	4.01569193154111	3.95396631481408	4.09879813886152	3.77304609132569	-0.299827758087509	0.559658890232279	0.865015267733769
Merged-chr15-27923825-4	chr15	27923333	27924333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	102015.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.02187425666498	5.88448055922362	5.37486523677723	5.49849373129249	5.68767344353545	5.3729279011441	-0.488854178449433	0.175579482067967	0.555563740582127
Merged-chr17-49423057-4	chr17	49422554	49423554	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5310.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.49096785760356	4.37830169493256	5.02228115927862	4.60722335238088	3.73026219635062	4.53411944388882	-0.748341172979738	0.191201088813912	0.577822466760773
Merged-chr9-14846891-4	chr9	14846365	14847365	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13345.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	3.16509613395811	3.30858160032639	3.61819639146083	3.19964585574906	2.99677702271001	3.33111604164511	-0.793094019797188	0.23149187503841	0.62745071742539
Merged-chr10-37195205-4	chr10	37194711	37195711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.60020551532285	7.81677511621841	7.63159375223053	7.45410855663068	7.72139815392981	7.58436811540916	-0.13698920444171	0.554437293757519	0.862810569469705
Merged-chr5-144770648-5	chr5	144770114	144771114	+	780.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	ID_B1|SINE|B4	1822.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	5.79645816017352	5.79895254377648	6.11273281007726	6.32026860452421	6.44278795524535	6.31461370753304	0.792596664275206	0.00655046228247164	0.0745113965276692
Merged-chr12-4871678-3	chr12	4871171	4872171	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033488, intron 1 of 13)	intron (NM_001033488, intron 1 of 13)	2688.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	2.80398830577165	2.92706446963062	3.02147886169318	3.01734056656127	2.71849979698505	3.36346391131562	0.6197890164995	0.404201583424749	0.779435115494192
Merged-chr13-21531024-4	chr13	21530425	21531425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001251834, intron 1 of 1)	CpG	189.0	NM_139141	93681.0	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding	6.25648328241105	6.49913596645927	6.54374237056205	6.61961605535542	6.31259715787655	6.38763250129914	0.0169551507729018	0.952150544068454	0.989068549972429
Merged-chr5-139403345-2	chr5	139402845	139403845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3042.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	7.29874403565623	7.4166694600241	7.34092838524828	6.90489680793012	7.25947681584335	6.82568861270264	-0.493717176240712	0.0560163433703411	0.304734525576647
Merged-chr12-111447746-2	chr12	111447246	111448246	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	5085.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.77682293978297	4.88080403751734	5.09514119396787	5.15235537065065	4.69665537274573	5.09375485049558	0.15570640146446	0.701677377808599	0.921463870335944
Merged-chr16-33744862-3	chr16	33744359	33745359	+	947.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-49178.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.2089915014163	6.00035222567023	6.08642346825334	6.27262912641915	6.49505961946799	6.25433877213833	0.420419847207384	0.141492941736968	0.502183459290427
Merged-chr18-77773618-4	chr18	77773120	77774120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007505)	promoter-TSS (NM_007505)	1.0	NM_001357533	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	7.28723233985233	7.65081363301349	7.19380775585064	7.19348825288954	7.53937208929445	6.71910394740941	-0.281737301983092	0.363038059971912	0.748604056655008
Merged-chr5-123013768-4	chr5	123013270	123014270	+	845.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	3.22086529994866	3.19707143278098	3.16063625148248	3.26659063753173	3.30015768153999	3.66042232737693	0.871870325863234	0.168195258328507	0.54461790334787
Merged-chr18-9538794-4	chr18	9538308	9539308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80661.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	5.80758425888964	5.84255607430541	5.40648251520802	5.80312366479178	5.68829633791621	5.65213134069205	0.00569126540831247	0.98625264798241	0.997033990984076
Merged-chr12-102320103-4	chr12	102319573	102320573	+	773.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	36432.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.94317674042618	3.84602030123491	3.85925974496733	3.86404872921217	3.87771969591371	4.11815369021864	0.203986776722495	0.688539993975146	0.9172299553909
Merged-chr7-45923628-4	chr7	45923126	45924126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	6.87225245685697	6.75083759003573	7.32030507994082	7.11630567042851	7.11163046378625	7.16537054794464	0.206678451162167	0.446841075119814	0.806122541261987
Merged-chr8-3221177-4	chr8	3220688	3221688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	CpG	58429.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.95987552191894	5.12172942492255	5.11257978423485	5.08052120528733	4.98841626338442	5.3018859021336	0.114381803753429	0.757521804359752	0.939883186830738
Merged-chr6-38951077-4	chr6	38950576	38951576	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	32090.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.99174969348463	6.66927146625727	6.82948981358982	6.97048050179445	6.97286989351428	6.87314206294935	0.162190223516358	0.524448047599575	0.848701264715048
Merged-chr7-100198837-1	chr7	100198337	100199337	+	687.400024	f0_balb.idr	Intergenic	Lx6|LINE|L1	20154.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	3.80765541341168	3.66640349335125	3.87411879376942	3.27053913440025	3.58000444577593	3.48066732739503	-1.15137076793562	0.0520207613825909	0.291347076335911
Merged-chr15-96642605-7	chr15	96642174	96643174	+	956.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134086)	promoter-TSS (NM_134086)	239.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	8.56595114707566	8.69040354880848	8.32347672555185	8.48869683994485	8.50038218216627	8.21751518952619	-0.176741589603857	0.433801688099774	0.798014035713787
Merged-chr15-98532551-2	chr15	98532051	98533051	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153345, intron 2 of 10)	intron (NR_153345, intron 2 of 10)	1718.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	4.8514104887933	4.92230303865964	4.6135295869942	4.87406981515866	4.84283964465408	4.45337232399975	-0.141730610288439	0.738462118706465	0.934032187674406
Merged-chr5-28071964-4	chr5	28071472	28072472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	560.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	8.03123605973273	8.27592513581808	8.08788743860099	8.03497386392465	8.14924248789044	7.80942594833624	-0.177688398767225	0.435296355519297	0.798959195186662
Merged-chr11-50325745-4	chr11	50325229	50326229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007597)	promoter-TSS (NM_007597)	-56.0	NM_001110500	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	8.81996825611924	8.94279256714272	8.47671222480911	8.69469356154406	8.80366160883929	8.50940163466384	-0.121388960423316	0.599255883003785	0.880928581989958
Merged-chr19-4306756-1	chr19	4306256	4307256	+	789.0	f1_balb.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-534.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	3.55107157136242	3.4118072912029	3.34189842971853	3.66781301960689	3.31545108182904	3.4148253199557	0.119568663003388	0.843199941129849	0.96331130255476
Merged-chr15-58976644-4	chr15	58976140	58977140	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	42830.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.85940609369837	4.48619821177605	4.9027269393752	4.53157302028985	4.0389386987548	4.29184536232489	-1.14392433834115	0.015932807434438	0.138588442505197
Merged-chr9-90260317-1	chr9	90259817	90260817	+	668.0	f0_balb.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	10452.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.57527082872888	5.52981874369389	5.63884501760255	5.81333781902712	5.64921862043723	5.92326245947066	0.390932998698363	0.217041417020731	0.610703221688078
Merged-chr2-156324876-3	chr2	156324378	156325378	+	869.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 2 of 12)	RMER21B|LTR|ERV1	-12174.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	4.58148525663309	4.78929920414893	4.95714556074717	6.21260594746215	6.63700639679877	6.06076064055179	3.01583027982615	4.67803660216682e-16	1.5823173560695e-13
Merged-chr18-36669588-2	chr18	36669088	36670088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025291, intron 2 of 4)	intron (NM_025291, intron 2 of 4)	723.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	7.25922644999777	7.58387093223851	7.00728829933877	7.34188296076323	7.36155315027891	6.9334954289852	-0.118089486569388	0.67565017707284	0.912256104731418
Merged-chr7-100861440-2	chr7	100860934	100861934	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	3.86296291517589	3.43461050968264	4.27740153737522	3.90884589778773	3.85931490175943	3.64255147265149	-0.277159436042831	0.651150672434938	0.90273950784605
Merged-chr15-72835968-1	chr15	72835468	72836468	+	877.0	f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	MTE2b|LTR|ERVL-MaLR	-25644.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	3.5605428397894	3.5547151677771	3.74744765460759	3.71021257188253	3.78819330581249	3.81663877918408	0.523198483069405	0.332481452894767	0.723636403333698
Merged-chr1-40295036-4	chr1	40294537	40295537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 5 of 10)	intron (NM_001123382, intron 5 of 10)	28451.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	6.98310509767201	7.02247201664745	6.44413865829277	6.73235550200431	6.81835833800275	6.59806826607947	-0.203000657997052	0.48095769891867	0.824891904452147
Merged-chr19-7206257-5	chr19	7205684	7206684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134150)	promoter-TSS (NM_134150)	100.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	7.94868238486837	8.03486194793836	7.83042677110355	7.91248711028032	7.88666389779823	7.66516947319937	-0.161587225056582	0.467604044372077	0.818056375344009
Merged-chr11-98938236-4	chr11	98937719	98938719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 1 of 8)	intron (NM_009024, intron 1 of 8)	501.0	NM_001177302	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	7.43564823121876	7.50018498124289	7.40719019443126	7.27870625618325	7.41954689535802	7.1627441511392	-0.223099082014992	0.337521610014654	0.727414835127997
Merged-chr6-72393311-2	chr6	72392811	72393811	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2644.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	3.54379268925291	3.82097231437707	3.781157568352	3.99004650183947	3.68887515829458	4.04322825591523	0.605028240543835	0.269903311983724	0.666925517730306
Merged-chr4-132969537-4	chr4	132969072	132970072	+	881.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4523.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	4.4953215392073	4.34437763810734	4.69177668909827	4.65921874532887	5.11093665409681	4.83360521417411	0.894385823616716	0.0375533847078597	0.239553973840202
Merged-chr1-43500304-4	chr1	43499814	43500814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	54563.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.69145345128341	5.47449801842377	5.39638748379024	6.27925102916732	6.22143567976435	5.84301467099222	1.07250702497691	0.0010390494691035	0.0185485298318567
Merged-chr17-71483959-3	chr17	71483458	71484458	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8615.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	4.14740291507135	4.51804166516588	4.67395951315056	6.36858399473838	6.56280753065277	6.14359338109917	4.00946886435897	9.23504469161772e-22	8.444281304397e-19
Merged-chr19-34402922-2	chr19	34402429	34403429	+	785.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	72206.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.62509179679789	3.87783809625143	3.64547456539925	3.62552543441955	3.3346220975794	3.66320301279457	-0.639703469613997	0.270090670999779	0.667113053685276
Merged-chr4-53155687-4	chr4	53155180	53156180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4215.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	8.01505872468793	8.13489197134609	7.6346727028864	7.69850796428251	8.09978727459633	7.47404447482063	-0.224332456336951	0.419022528521974	0.788801788481746
Merged-chr17-25681827-4	chr17	25681286	25682286	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35386.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	5.42997856908888	5.3385395763754	5.27269941362377	5.12472080105917	5.29315957877769	5.13632594929989	-0.319178008189371	0.360782228207907	0.746938274913623
Merged-chr7-90038394-2	chr7	90037885	90038885	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	MTEa|LTR|ERVL-MaLR	9226.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.46196664218226	6.27410322894186	6.6296381619701	6.68862132754035	6.63618057210659	6.71986313413709	0.361220275201464	0.178497198720526	0.559779750571845
Merged-chr6-32528266-4	chr6	32527772	32528772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	17131.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.63755521187254	5.52918288356934	5.32717027173223	4.94748484675779	5.10272022916605	4.97939484773979	-1.01460927544694	0.0047720404133439	0.0592910166811287
Merged-chr19-4119044-2	chr19	4118544	4119544	+	700.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	L2b|LINE|L2	2531.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	2.47891031923784	2.56523894536393	2.63060797167559	2.40577041819593	2.33723653926103	2.64300277059867	-0.576788501641641	0.476762097775275	1
Merged-chr2-167251689-2	chr2	167251189	167252189	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11152.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.31197592921618	3.11973283707493	3.04230491880425	3.25264791184378	3.34945367198956	3.29624580429518	0.548767538494749	0.391175569728507	0.770206739374576
Merged-chr3-109444247-1	chr3	109443747	109444747	+	902.0	f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	103564.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	1.84011850987278	1.97347581552413	2.03915529259845	1.71837990594469	1.68244595367474	1.77659584903205	-2.28920627899303	0.0386986644293664	1
Merged-chr1-173740321-2	chr1	173739820	173740820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	B1_Mus1|SINE|Alu	1489.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.40186921980433	7.75919658765657	6.97341387123662	7.56727125006287	7.83242040136535	7.31296943796447	0.242652935350922	0.420581215322374	0.789800880993226
Merged-chr19-3388806-4	chr19	3388326	3389326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-31.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	8.14210549100587	8.26581848455644	8.06539234292539	8.01337562998235	7.92696113685464	8.07183383366749	-0.228779144650295	0.280653172293945	0.67872539226839
Merged-chr6-38610351-3	chr6	38609853	38610853	+	867.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_138680)	TTS (NM_138680)	26886.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	3.8910515232535	3.75117742156096	3.62120013303155	3.62885196738867	3.79808865824376	3.74633011190017	-0.119656399935999	0.825492728276959	0.958821343666982
Merged-chr17-7398465-4	chr17	7397993	7398993	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13188.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.99871865510776	4.08192030081309	4.34686030016952	4.82886306344248	4.59297734244737	4.22827191176021	1.14252260531013	0.0182866361660355	0.152525503418553
Merged-chr3-68056608-4	chr3	68056241	68057241	+	850.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177585)	TTS (NM_177585)	-8061.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	3.81717851889082	4.02970525405038	3.90743684573724	3.6685056879651	4.29861670766212	3.76645183924454	0.102481297024055	0.857538237956605	0.966767080388296
Merged-chr2-169918620-3	chr2	169918100	169919100	+	954.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	44587.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	1.92371575708115	1.90634344619258	2.044313512071	2.25265618841903	2.13103408878697	2.6325497944595	3.38885938284243	0.0026879791588372	1
Merged-chr2-153146388-2	chr2	153145888	153146888	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-14913.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.188493349771	5.330014355573	5.35016300318448	5.11596787020956	5.4398577162034	5.35271755086911	0.0511046219521857	0.88498460769275	0.973538624783452
Merged-chr16-10481618-2	chr16	10481118	10482118	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	1546.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.57822841934082	3.85475519301762	4.34233920604448	4.66806088697008	4.49348954847536	4.94412951479481	1.01910286120883	0.0477127954093044	0.276666988845996
Merged-chr1-144320214-4	chr1	144319725	144320725	+	956.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71121.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.20761708078044	7.1923370416068	6.91755679170925	6.92736792383557	7.01588940075244	6.76074819486682	-0.31465075359712	0.216032953008217	0.609468703936657
Merged-chr4-133911086-4	chr4	133910578	133911578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23281.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.28238571671574	8.15162420949827	7.69166308489426	7.94895206985692	8.23575892516465	7.7940056563363	-0.08609923379461	0.745561693370749	0.936219268400062
Merged-chr6-51520871-4	chr6	51520358	51521358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-3045.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.075417705631	5.0930641335903	5.5212501014558	5.16560457411676	5.29956818303501	5.39219701545145	0.108945736965129	0.768947612582257	0.942983923980385
Merged-chr7-96406756-4	chr7	96406249	96407249	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-64785.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.74602082321781	3.81633615884135	3.64162744171689	2.95053620080789	2.96642648935922	3.38847708302759	-2.7641299825823	0.000137322948706592	0.00369905079830952
Merged-chr1-9848370-3	chr1	9847880	9848880	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037759)	promoter-TSS (NM_001037759)	99.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	2.66975150662139	2.59821731227112	2.67079640534992	2.75507316487166	2.66350421852628	2.86479755123619	0.618590112175294	0.402506423919977	1
Merged-chr15-59263666-3	chr15	59263139	59264139	+	936.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43309.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	4.73653388594237	4.77803508018863	4.82784909619196	4.67559874640843	4.6127083650937	4.39579357831391	-0.481969190869229	0.243551676678534	0.640776628186919
Merged-chr2-29787637-4	chr2	29787124	29788124	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	47.0	NM_001290496	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	5.26669732536271	5.41035933654766	5.59536141949835	5.66128375434835	5.58308200323911	5.45957227715734	0.292503258090013	0.383093769782498	0.764535004943228
Merged-chr6-116725454-4	chr6	116724957	116725957	+	876.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8699.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	5.01783652920475	4.92880617836378	5.01538858689472	4.92771770342009	4.93428543027377	5.07954937814995	-0.0203988407772305	0.956174812736187	0.989807313282509
Merged-chr8-26699409-1	chr8	26698909	26699909	+	756.0	f1_c57bl6.idr	Intergenic	Intergenic	125014.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	7.12495206612366	7.32916196391462	7.00617934445637	7.35961265614121	7.65495302484398	7.45928077310943	0.494336775208486	0.0464234504771234	0.272661993880178
Merged-chr14-103815746-3	chr14	103815243	103816243	+	973.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	27958.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.73488708839768	3.82698477999239	3.91328750275995	3.40450649307196	3.34247281496272	3.41197006197897	-1.6051457559812	0.00554477090705319	0.0659098996620117
Merged-chr10-80824930-2	chr10	80824430	80825430	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1726.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	6.840842740786	7.0587894115728	7.15600025364488	7.36201662974132	7.54013677515637	7.18917805580389	0.538253527316009	0.0333132071677221	0.222680377732312
Merged-chr9-104244004-4	chr9	104243489	104244489	+	857.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	18941.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.0246437044282	4.21181165095236	4.54720693361656	4.58086629798643	4.22210989368583	4.45366487414638	0.405214391210319	0.403130650585858	0.778565016571072
Merged-chr1-34801715-4	chr1	34801205	34802205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183019)	promoter-TSS (NM_183019)	-17.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	4.83429366502249	4.81037639849357	4.91512027202407	4.82596892851251	4.52089742012689	4.6364362371747	-0.432298188142009	0.28464984076899	0.682372340844314
Merged-chr3-105877654-4	chr3	105877152	105878152	+	977.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	L1MEc|LINE|L1	6794.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	5.0906751307401	4.99859187213631	5.14512462030827	5.07263242791411	4.77124965673938	5.14413924083583	-0.174714876941674	0.646928901920222	0.90114476203283
Merged-chr4-15269730-4	chr4	15269181	15270181	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3861.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	4.9883281859805	5.33136729415109	5.1247206303178	5.09189078594787	4.9364724090915	5.22095774476284	-0.170345871008424	0.65105298950153	0.902735752871093
Merged-chr2-59203569-2	chr2	59203069	59204069	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42719.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.23002931300773	4.00392610831305	3.88178332696389	4.34689266736595	4.11283447165435	4.00673705636849	0.318772156075157	0.527316209511671	0.849922098680457
Merged-chr11-29429002-4	chr11	29428502	29429502	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 5 of 31)	MIRb|SINE|MIR	54830.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	5.19715000354897	5.3954259297933	5.2166941051163	5.02864465192978	5.06165394055313	5.43059692542872	-0.208141931225008	0.572276620396132	0.869807909725036
Merged-chr10-89444411-4	chr10	89443909	89444909	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	-442.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	6.14217897142142	6.30760999673675	5.97037130645663	5.99986459617809	6.29308567089885	5.98344678933247	-0.0764758162249657	0.801583496952334	0.952995299515894
Merged-chr6-39008203-2	chr6	39007703	39008703	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	59383.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	4.69944985597518	4.89407511207955	4.65812121600037	4.45405239873425	4.50400724403862	4.60265887387446	-0.581572497175681	0.160800797026658	0.533506188064807
Merged-chr4-134915687-2	chr4	134915187	134916187	+	749.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-771.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	4.97362398019136	4.96217436609881	5.62397879558883	5.33930283811969	5.64850199482327	5.55656189006376	0.614835903734016	0.119732357084072	0.462471223255784
Merged-chr4-141790064-2	chr4	141789606	141790606	+	803.416626	f0_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 1 of 14)	intron (NM_172338, intron 1 of 14)	538.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	7.1764252352271	7.30981855016838	7.27923511400309	7.15384590097633	7.38946229093171	6.9663067416791	-0.0937590921860473	0.709169601363147	0.923909555179111
Merged-chr12-111456515-2	chr12	111456015	111457015	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13854.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.36653782076252	4.41178766664659	4.76462994899965	4.44399210343169	4.72203904991351	5.02872285988624	0.547905761592647	0.227809262860071	0.622917746842476
Merged-chr2-158168584-2	chr2	158168084	158169084	+	871.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22192.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.30192070686216	6.27298087382447	6.22757981715663	6.1768714009985	6.26862673901803	5.97349535395542	-0.18987067743629	0.504355641369358	0.83765317778566
Merged-chr2-51312215-4	chr2	51311742	51312742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70411.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	4.10102047830106	4.52064451201025	4.27908379385841	3.75844062111295	3.70240235395105	3.97620553318509	-1.51497634200593	0.00356447473739335	0.0478298361472385
Merged-chr14-19706634-4	chr14	19706159	19707159	+	918.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44598.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	3.43148537075629	3.36777300844409	3.43467204128818	3.26379561025214	3.11787132912604	3.50489996636127	-0.454396218654362	0.464127831963354	0.816188315062566
Merged-chr11-21010246-2	chr11	21009746	21010746	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81078.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.59130648263876	5.33930172199097	5.93821560211915	5.18280770742517	5.49154634689723	5.64988601979964	-0.34685317647267	0.351968126599662	0.739597047277758
Merged-chr1-136625520-5	chr1	136625036	136626036	+	877.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	635.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	7.48488811503691	7.43670243870379	7.22422294389878	7.38616318288237	7.23321972526906	7.53971079246407	-0.0107763078394044	0.964449053970441	0.991478598183903
Merged-chr1-194995395-4	chr1	194994902	194995902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18443.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	7.4424993585815	7.38222973700088	7.25063002520292	7.36684928353694	7.34494932998258	7.16062457203361	-0.097871384770278	0.676215751446223	0.912421384593547
Merged-chr6-120822362-2	chr6	120821877	120822877	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	321.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	8.73466968861896	9.13578539017893	8.68675708455711	8.52351782047169	8.96038218658293	8.53091786589447	-0.24535976122135	0.327810083049913	0.71996044423843
Merged-chr18-24020857-4	chr18	24020391	24021391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021559)	promoter-TSS (NM_021559)	-78.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	7.1759685978491	7.1232319959677	7.02578840445485	6.68744055114483	6.45629998604437	6.72372870331694	-0.765410864736953	0.00251103483464009	0.036869275899194
Merged-chr1-24677814-3	chr1	24677353	24678353	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026719)	promoter-TSS (NM_026719)	-691.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	6.12436441378498	6.2447649221234	6.31575097127696	6.34176801237829	6.20082679890442	5.885876051224	-0.101358698649781	0.73407334983329	0.932325051544019
Merged-chr9-78632073-3	chr9	78631550	78632550	+	914.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153098, intron 2 of 32)	intron (NM_153098, intron 2 of 32)	16504.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	3.24914841919108	2.99049082952343	3.05363984246794	2.71507034450718	2.92621536384923	2.7509623840236	-1.44242758201359	0.0539890474345747	0.298077145440654
Merged-chr16-11460425-4	chr16	11459934	11460934	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	54786.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.07018426898216	6.06989134706207	6.25589132880262	5.775327825909	6.0289289154851	6.09282271236251	-0.2713537753874	0.363824626342198	0.74933829766087
Merged-chr19-3360097-4	chr19	3359632	3360632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 5 of 18)	PB1D11|SINE|Alu	-28725.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	7.08225585795108	7.44677285958991	7.37660049527469	7.50513901139952	7.86055214620867	7.50694183290204	0.485930938624104	0.0579284035102933	0.31103481959634
Merged-chr1-131679200-2	chr1	131678731	131679731	+	794.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-9464.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	4.26624575105605	3.97927364241605	3.98429380329567	4.34396952120665	4.14269680111782	3.83865859631891	0.123108851503373	0.812353208836919	0.955553570095744
Merged-chr3-52767495-4	chr3	52766979	52767979	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	27755.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	4.03426847637229	3.51053715053194	3.48120908273871	3.94568930165251	3.95380682802291	3.83890953566347	0.646517686155099	0.273279563677794	0.670530960559738
Merged-chr14-73324855-7	chr14	73324361	73325361	+	906.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 1 of 26)	intron (NM_009029, intron 1 of 26)	961.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	6.83912309160713	7.28739406622646	7.21780150823531	7.06727637223284	7.27293839718399	7.30912811686859	0.137619959502709	0.600436094093072	0.881676605324116
Merged-chr7-65646150-2	chr7	65645650	65646650	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172310, intron 1 of 18)	intron (NM_172310, intron 1 of 18)	1252.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	2.59727521565485	2.75210459794701	2.64104316223331	2.78929994941807	2.79494530986697	2.90037525567398	0.843355893439026	0.252596292707832	0.649948429823529
Merged-chr1-156471825-4	chr1	156471362	156472362	+	892.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	2466.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	8.0954896546944	8.3606399962864	8.03422256769364	8.25026245032987	8.41057511061197	8.1042382197966	0.127155521820004	0.578579702721117	0.872437129840066
Merged-chr5-31609627-2	chr5	31609127	31610127	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-4324.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	4.2643017640257	4.39220910465569	4.47782737579528	4.66451916454372	4.41793463161099	4.66409153906816	0.513810961078642	0.239443129077781	0.636332925081572
Merged-chr8-33386277-4	chr8	33385812	33386812	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-13.0	NM_152821	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	4.5464161705378	4.07644211756763	4.68057908278048	5.15685437738541	4.53453578644784	5.0306020679179	1.11120654965837	0.0217697047004979	0.170855837456992
Merged-chr11-120596980-2	chr11	120596480	120597480	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011568, intron 2 of 5)	intron (NM_011568, intron 2 of 5)	1385.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	3.95331441834404	3.76360528567903	3.84509457954123	4.01677300915869	3.84644537882895	3.96478598010869	0.261345748712107	0.608863560445571	0.885053989692691
Merged-chr2-75703965-4	chr2	75703516	75704516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	CpG	647.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	9.31446419642462	9.62670481308333	8.90135039201792	8.9709068192133	9.23861321558866	8.97288985030204	-0.341257627517536	0.17968550026854	0.561233900388314
Merged-chr2-25548067-2	chr2	25547567	25548567	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	3.5589969663672	3.19316710952101	3.56909403459074	3.46567953492185	3.49595740100863	3.47951111015537	0.120677473327959	0.841919246493513	0.963002495523594
Merged-chr8-11341341-4	chr8	11340845	11341845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-28519.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	6.08164863406023	6.3778193903748	6.20995113456936	5.61469834992053	5.66114419419707	5.97177236821009	-0.84327256597091	0.00657878076617598	0.0746905703359218
Merged-chr13-54686004-2	chr13	54685504	54686504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	MIRb|SINE|MIR	1804.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	3.52547151541135	3.29396894072018	3.54210499023591	3.78380158927249	3.56649918043786	3.66624979629397	0.78116471814365	0.175752189882242	0.555774586970482
Merged-chr8-120685673-2	chr8	120685173	120686173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	17353.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	7.20152127112919	7.26342519227586	7.46810949809842	7.03773708486894	7.11338686322795	7.11579834650672	-0.330542723439558	0.166473716578615	0.541768812933095
Merged-chr4-135351896-3	chr4	135351433	135352433	+	778.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	ID4|SINE|ID	1281.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	4.93886978702731	5.15828084298434	4.87314589762617	5.41288728997905	5.37536937552759	5.41687439980365	0.804261563081544	0.02581950895864	0.19054454114683
Merged-chr10-128340497-4	chr10	128340001	128341001	+	841.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	B1_Mur4|SINE|Alu	2774.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	3.33791188461185	3.74169572976478	3.72005251497624	3.78873758655608	3.47575299418677	3.88674382598663	0.374225965468459	0.530313138846087	0.851072941285938
Merged-chr9-105132344-1	chr9	105131844	105132844	+	894.0	f1_balb.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-539.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	6.12127710175823	5.84069424928892	6.21592732268247	6.35423466589196	6.51029093028085	5.74525058722183	0.326393709381817	0.342221543713738	0.731283521951228
Merged-chr16-4559051-2	chr16	4558551	4559551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	CpG	669.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	6.19436822634948	6.45901114396709	6.66138349786079	6.12246623211762	6.51679562363073	6.11000613213687	-0.277199215859604	0.373311900803675	0.757216533617869
Merged-chr3-95637392-4	chr3	95636953	95637953	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	12473.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.35782006147084	6.44475910590662	6.38529242083415	6.27878466560637	6.47769912667143	6.40740775130886	-0.00641109535330246	0.981018157429282	0.995657460731624
Merged-chr14-103843889-5	chr14	103843321	103844321	+	916.286682	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-120.0	NM_001276296	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.17613145672476	3.17450824841759	3.43032307132351	3.15749595972074	3.08166553633052	2.92340017172778	-0.85694267706459	0.202302648621727	0.592092816972094
Merged-chr2-13560061-2	chr2	13559561	13560561	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-14250.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	3.76690431851092	3.76343049064146	3.76851089936033	3.61617945944358	3.49751235477536	3.93363809980238	-0.273546625156946	0.622857989152356	0.891249034616027
Merged-chr7-63920037-2	chr7	63919537	63920537	+	756.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256311, exon 3 of 3)	exon (NM_001256311, exon 3 of 3)	3180.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.44795071031044	3.47722699578231	4.01741749924583	3.50411464961734	3.50003546128298	3.81803517064916	-0.188232279813226	0.757685371673784	0.939883186830738
Merged-chr2-157079289-4	chr2	157078782	157079782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164663)	promoter-TSS (NM_001164663)	-17.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	5.94554436978147	5.37486583821111	5.63914810967075	5.63566959864906	5.36220618200714	5.53421932978385	-0.309909859934375	0.385325959804581	0.766341662207074
Merged-chr10-81627351-1	chr10	81626851	81627851	+	1000.0	f0_c57.idr	promoter-TSS (NM_001163430)	promoter-TSS (NM_001163430)	-29.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	6.97198256698828	7.16436854721073	7.08184933029024	7.32550685823316	7.50640538405797	6.90014465017242	0.307748643405373	0.256186381700405	0.653209528983453
Merged-chr14-32165761-5	chr14	32165294	32166294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019744)	promoter-TSS (NM_019744)	5.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	7.34512065957965	7.34109871612586	7.3385659165771	7.50015418558725	7.63841237295718	7.52175605398056	0.317710012590236	0.154598067863149	0.523896269417052
Merged-chr3-135486144-2	chr3	135485644	135486644	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 1 of 16)	intron (NM_027288, intron 1 of 16)	533.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	5.9315975531758	5.93265359693784	5.95074896823895	6.03782667179606	5.73477185643478	5.65135815487271	-0.203788073447898	0.51238048755496	0.841890081326853
Merged-chr19-53394819-4	chr19	53394335	53395335	+	997.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4201.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.13171912471525	3.0505922933003	3.3664700457899	3.05590850016013	3.11452696286568	3.10523602115501	-0.390650246070444	0.550560023554314	0.860709619458349
Merged-chr3-121815182-5	chr3	121814700	121815700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355756)	promoter-TSS (NM_001355756)	102.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	7.19769343095172	7.14398368199496	6.8745183786408	7.21316051103636	6.95668654820921	6.87256002929252	-0.093907067363085	0.717888206101595	0.927216085145081
Merged-chr1-133661415-4	chr1	133660861	133661861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	38.0	NM_144530	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	7.88723595143278	8.14263795938998	7.66675886429228	8.02869224537169	7.99682710453255	7.40823412782862	-0.0988127627309126	0.72138674380094	0.928468816889347
Merged-chr4-138133575-3	chr4	138133082	138134082	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 8 of 30)	intron (NM_001355700, intron 8 of 30)	4936.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	4.50643642938051	4.73529119299103	4.4057499830463	3.50611686648118	3.58037288662883	3.60539917885681	-3.23466423689168	4.09827940902809e-08	3.23845805381205e-06
Merged-chr5-34526952-4	chr5	34526467	34527467	+	870.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1183.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.49081123077441	5.86293428326579	6.37073103509911	5.73357457787895	5.73433827354721	6.05743531505005	-0.184344972656712	0.621127813419982	0.890545413957954
Merged-chr5-122209935-3	chr5	122209418	122210418	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028752)	promoter-TSS (NM_028752)	189.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	4.75593315772261	4.34958080594541	3.74797168626509	3.80087638389872	3.52802391647253	3.82392556472766	-1.88429918980451	0.00174649451116353	0.0278395240009377
Merged-chr19-7057298-2	chr19	7056798	7057798	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	530.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	5.39794043752082	5.14835384993348	5.55093291508281	5.38829521640181	5.35923434691043	5.61273328005898	0.163466424768247	0.642571829214071	0.899438418121699
Merged-chr6-84640823-3	chr6	84640330	84641330	+	863.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-46922.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.33657249096475	3.08377816501106	3.30318516594335	3.22030772801018	2.84697376907379	3.31974088317877	-0.4416480051278	0.523151747180552	0.848000517783869
Merged-chr4-95162477-4	chr4	95161980	95162980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110258.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.41585222956974	6.4877668270712	6.30538578202204	6.41780528806409	6.86707569860339	6.67213473008631	0.418918580473442	0.13736042897447	0.495254639661481
Merged-chr7-142057024-4	chr7	142056541	142057541	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	3812.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	3.34214555172307	3.44283223087326	3.63913934414266	3.35993147374807	3.43025297211478	3.33519112996987	-0.360389616687576	0.546525979445805	0.85884385473937
Merged-chr15-27680782-4	chr15	27680289	27681289	+	988.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	753.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.53687164792319	7.7530799585738	7.30068908226449	7.70053702251678	7.86380756226498	7.47097617380807	0.208862464727447	0.414242076497556	0.785695810082599
Merged-chr4-109202167-4	chr4	109201652	109202652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133885, exon 1 of 23)	exon (NM_133885, exon 1 of 23)	120.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	7.77437774408531	7.96863934619808	7.73199203709352	7.88485710056407	7.98675199305291	7.66000617998766	0.0357146800584444	0.877141708608523	0.971503123567225
Merged-chr13-58074992-4	chr13	58074495	58075495	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 5 of 16)	L1M2|LINE|L1	27433.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	4.17617197656834	4.1387052827459	3.815334689817	3.7085622060493	3.42451721659867	3.88630581517971	-1.22894792292612	0.0299771922017578	0.208821411225727
Merged-chr17-70974328-4	chr17	70973836	70974836	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023402, exon 4 of 4)	exon (NM_023402, exon 4 of 4)	16180.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.69896040600229	5.84835749036722	5.85172792260038	5.67525215550555	6.1346123514621	5.96047624834622	0.256475448194699	0.422702379192342	0.791484614720594
Merged-chr18-62977862-4	chr18	62977414	62978414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028017)	promoter-TSS (NM_028017)	-2.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	7.38519965582309	7.68282450847386	7.44349478719151	7.48799281265779	7.69264981875775	7.33551505706671	0.0118070279541193	0.961763689937804	0.990671368065669
Merged-chr8-46850005-2	chr8	46849505	46850505	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110260.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.48860884138533	6.57489552700844	6.64956172884499	6.38880269681789	6.88472698516765	6.48517857978584	0.0762030023576393	0.791134389333354	0.949694766870106
Merged-chr5-143528106-4	chr5	143527598	143528598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009007)	promoter-TSS (NM_009007)	-67.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	8.30436741000644	8.06010911849172	8.18699212544762	8.35502180714271	7.92685593280618	8.08687648139197	-0.0748890521729597	0.748974188384279	0.93711275444937
Merged-chr19-34192268-4	chr19	34191772	34192772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360716)	promoter-TSS (NM_001360716)	43.0	NM_029682	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	7.93525360369892	7.98298208333162	7.79879571358257	8.03985105581119	8.10923067505624	7.74968105809961	0.101171316553955	0.657718624597608	0.904859102731141
Merged-chr2-145857963-2	chr2	145857463	145858463	+	870.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 7 of 12)	intron (NM_028724, intron 7 of 12)	-45278.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.80502002424396	3.48778955999262	3.82943591408699	3.7658044325276	3.58027028597233	3.58804781360761	-0.219433191555897	0.697523049275271	0.92000165836138
Merged-chr16-22653869-2	chr16	22653369	22654369	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	3362.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	3.16718730987577	3.34488256515801	3.38394793747379	3.24998093500224	3.22379188991464	2.9810621527902	-0.567595014880175	0.387800567440033	0.767721672469137
Merged-chr11-53532420-4	chr11	53531931	53532931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252333, intron 2 of 9)	intron (NM_001252333, intron 2 of 9)	12243.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	6.57777563603424	6.33807933532277	6.24504853753662	6.42846013695488	6.42838214789671	6.58494225415638	0.12291310051101	0.658047964749398	0.904934223327349
Merged-chr1-180427347-2	chr1	180426847	180427847	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56157.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	4.97817207206519	4.64143483950081	4.72161606242862	4.65960277611559	4.4233696163719	5.00144833140283	-0.202418717626082	0.646049182007013	0.900865738310088
Merged-chr2-52858660-7	chr2	52858048	52859048	+	945.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	CpG	680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.24078922187694	7.73055036100156	7.86523538956679	7.08430280373918	7.31450753879252	7.25578210847094	-0.606982129702088	0.0255642532510228	0.189518031406905
Merged-chr18-61638124-4	chr18	61637600	61638600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	5.14606616086628	5.08985842959102	5.02741904527064	5.23954090995396	4.69446637387415	4.82965666726857	-0.318937467619149	0.427272051036448	0.794204865817398
Merged-chr1-78702555-3	chr1	78702057	78703057	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44117.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	5.78416888675865	5.59229574407466	5.75611608589467	4.30773328187384	4.06469960807452	4.53286376143186	-3.32194515718625	2.39431535179993e-14	6.07396926196857e-12
Merged-chr12-16878814-3	chr12	16878342	16879342	+	996.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16136.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.54742346844904	6.60973266830953	6.62911006555254	5.5950561095317	5.86413906538079	5.88428070363406	-1.3615389910453	2.72307022288485e-06	0.000130293977634159
Merged-chr7-101061419-3	chr7	101060867	101061867	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47408.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	5.16153744025253	5.11180546837968	4.72947450871191	4.82097846476554	4.7920806973911	4.66956301133171	-0.574077654423797	0.153451815659308	0.522418013885671
Merged-chr8-46893667-2	chr8	46893167	46894167	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93220.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.76496940817675	6.76172431571849	6.66808468898289	6.72957239580701	6.8105142217264	6.49927953162956	-0.0609544128767752	0.814989903259844	0.956370078970016
Merged-chr9-44510886-2	chr9	44510386	44511386	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007551)	TTS (NM_007551)	11750.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.10672965476322	3.84740213757974	3.91463628083605	4.11531951869759	3.69191738402874	4.3025613737376	0.265286502428551	0.626199848417549	0.892820577724479
Merged-chr10-95372102-4	chr10	95371609	95372609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35833.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	4.24689589116241	3.79718239862684	3.77625634992788	4.04195132033817	4.12050619189077	4.19773500833853	0.441555369895074	0.402534135265954	0.778081174697644
Merged-chr17-23741010-2	chr17	23740474	23741474	+	980.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-644.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	3.61406282677233	3.49716764543342	3.66294863008958	3.56465904487843	3.64629625901437	3.92563579674921	0.424993826421351	0.448245914968418	0.807155185977451
Merged-chr1-51907891-4	chr1	51907390	51908390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	8088.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	5.87345127873366	5.57437227924416	5.56452717859982	5.68265933102493	5.30039671187379	5.24956960427404	-0.479966157892884	0.174786014060996	0.554295093299313
Merged-chr16-49853153-4	chr16	49852658	49853658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.85581747619553	6.56764274929415	6.61636973653762	6.86599453317476	7.18700199355678	6.88147533956917	0.47270046982603	0.078800374413562	0.370868463259694
Merged-chr2-32501638-2	chr2	32501138	32502138	+	916.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33721.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	3.92230003597593	3.94453815140648	4.09033148336796	4.11021967645808	4.09251328704002	4.06452007779023	0.319139142205699	0.509605401645014	0.840445299624642
Merged-chr12-3346346-2	chr12	3345846	3346846	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18786.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.99580774854502	4.0514454615753	4.55865661833524	4.33927535177422	4.17844886976421	4.65977085725224	0.485214575963614	0.341458809522221	0.730861271883589
Merged-chr11-29147272-3	chr11	29146775	29147775	+	716.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 15 of 27)	(TG)n|Simple_repeat|Simple_repeat	16524.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	5.92584886573483	5.66671462734438	5.85414630222299	6.58270859379329	6.33762082846732	6.48066316948727	1.10116076183579	0.000173136700470838	0.00445603420129213
Merged-chr5-86190532-4	chr5	86190050	86191050	+	881.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	7351.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	3.51755886863529	3.60647715329383	3.74205659398105	4.35583721740977	4.56384766297429	4.73672136287844	2.89134603410577	1.06792588518599e-07	7.57544561419912e-06
Merged-chr5-90655974-3	chr5	90655479	90656479	+	900.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15452.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.12826645722776	4.08619138443923	4.04052809736	3.94172966516301	3.89240182185576	4.10895044561451	-0.329024707374982	0.501020142527255	0.835364873648088
Merged-chr11-103345686-2	chr11	103345238	103346238	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045346, intron 2 of 3)	intron (NR_045346, intron 2 of 3)	985.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	3.54756451700718	3.60136656339145	3.58273453402013	4.01843946407274	3.93750124360463	3.91850025045123	1.26162118825895	0.0177190429254504	0.149079825149491
Merged-chr2-109959324-4	chr2	109958846	109959846	+	913.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	41699.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	4.05697464252932	4.17800327253182	4.38321357560406	4.05949100432697	4.36658097930746	4.23471875510241	0.073050163919333	0.879083668326346	0.972074795996392
Merged-chr9-107628148-2	chr9	107627641	107628641	+	973.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	7201.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	4.60724045789435	4.80788772701674	5.00009285581872	4.82994889523851	4.86563275838003	5.27918493265489	0.420317576502734	0.309347122015215	0.704972356009282
Merged-chr3-79678814-2	chr3	79678314	79679314	+	887.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_212452, intron 4 of 17)	intron (NM_212452, intron 4 of 17)	49735.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	2.82827067525004	2.71924735421882	3.02379909664409	2.96354427808832	2.81867198667432	3.09546683871165	0.492464553086167	0.489524549802983	0.829739482756292
Merged-chr7-126488656-2	chr7	126488156	126489156	+	762.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163713, exon 4 of 9)	exon (NM_001163713, exon 4 of 9)	1301.0	NM_001163713	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	3.69665494183803	3.44405578236111	3.95205181341754	3.56789391203156	3.54428513357265	3.7379201034904	-0.309019949077875	0.593665652479041	0.878589727861081
Merged-chr13-37120436-1	chr13	37119936	37120936	+	824.333313	f0_balb.idr	Intergenic	Intergenic	-70192.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	3.98993608463674	4.39985787368239	4.16558649389894	3.5060145510419	3.75594229631786	3.90282776834858	-1.44979683998389	0.00853279150648948	0.0901811908639625
Merged-chr6-91706262-4	chr6	91705764	91706764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	22197.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.19842066440884	5.7931147434846	5.47010288281911	6.14107918996489	6.27759470289086	5.88583566227222	0.431515005357474	0.221359447339142	0.615912954161356
Merged-chr10-24468866-4	chr10	24468366	24469366	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126576.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.2453158807278	4.33509118685591	4.36888814470385	4.66829833260553	4.45982791543636	4.60388461253241	0.664383918841431	0.126058882153206	0.474780219563845
Merged-chr5-115339120-4	chr5	115338614	115339614	+	710.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029645, intron 1 of 2)	B3A|SINE|B2	2047.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	4.29143580653134	4.47499466073194	4.42237071828795	4.71923540152206	4.39686287099886	4.8739765880801	0.662128595182388	0.139024775938283	0.498125718308257
Merged-chr9-53676329-2	chr9	53675829	53676829	+	872.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8822.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	3.46764780268538	3.59039747577325	3.67691434084646	3.67861126336309	3.61319465229383	3.58897268849952	0.180647062469211	0.744951752780814	0.936032341688524
Merged-chr6-113695411-2	chr6	113694911	113695911	+	607.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172161)	TTS (NM_172161)	-1639.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	3.90423378491314	4.03411522729709	4.36512587041897	4.23763253665939	4.26248566631613	4.30585174988884	0.456887890138847	0.347087812470573	0.735209070313411
Merged-chr16-10970800-4	chr16	10970306	10971306	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	22315.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.91887972101264	5.93364500132348	6.12865430677794	5.8302539491468	5.77885447991169	6.0419921004553	-0.195823462159197	0.518339909309418	0.845156513047069
Merged-chr5-96162625-4	chr5	96162111	96163111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-621.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	8.08485187396942	8.1314035726967	7.73530592751785	7.89222794072885	7.93022334052897	7.94983529623016	-0.113158434018371	0.620636693599044	0.890240100691087
Merged-chr1-135660311-3	chr1	135659801	135660801	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59762.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	6.83211362324371	6.91254167174491	6.58957711737152	5.73475816806791	5.47048520706551	5.60543372688442	-2.01818193950571	9.63207442744572e-12	1.55322800185834e-09
Merged-chr6-51469983-4	chr6	51469505	51470505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	-111.0	NM_016806	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	7.93774769365147	8.3606882443494	7.8412460035012	7.87621768594402	8.09304287814099	7.68327143834395	-0.243585872655635	0.348562128256915	0.736437007632111
Merged-chr1-16665244-4	chr1	16664751	16665751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026392)	promoter-TSS (NM_026392)	60.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	6.89722187107221	6.92720973523615	6.85471547243355	6.98541126809904	7.00247013819523	7.03788285491863	0.171705557459204	0.472315798093732	0.820550293768681
Merged-chr6-124981984-3	chr6	124981497	124982497	+	869.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14723.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	3.7327257088566	3.7539811700159	3.85412774312899	3.56882555776823	3.68609648049137	3.6713431491296	-0.451314202225484	0.401776010809138	0.777753227258936
Merged-chr11-59519077-4	chr11	59518581	59519581	+	752.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12441.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	4.75561638374443	4.86680880115464	4.82956779096806	5.10761039412188	5.35685145708916	4.97234793620051	0.752687199224323	0.049693289210246	0.283613541724852
Merged-chr11-69061646-2	chr11	69061146	69062146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028005)	TTS (NM_028005)	1871.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	5.33169376385359	5.06263332727486	5.35157191862797	5.1202606402475	5.62574774563803	5.63610981422211	0.455833968928621	0.222759280850725	0.61771534824776
Merged-chr12-55385993-2	chr12	55385493	55386493	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	1771.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.06419914303223	3.8042841562025	4.73921638856666	4.15392088313445	3.77290744175031	4.37382009182456	-0.375867962045809	0.524775736073419	0.848833934932934
Merged-chr6-54680844-1	chr6	54680344	54681344	+	555.0	f0_balb.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	-780.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	5.90485714847324	6.23237320071478	6.0423343070889	4.6432530870438	4.7877659566312	4.76780647285183	-2.66399952873194	9.42859572492045e-13	1.79939126853023e-10
Merged-chr11-85126972-2	chr11	85126472	85127472	+	731.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	12983.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	5.05019268777551	5.06185781202389	5.35156709146406	5.32092132467107	5.6570434963229	5.68645651177045	0.815667847646615	0.0225544571573366	0.174870048959828
Merged-chr5-105719115-2	chr5	105718615	105719615	+	823.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	18305.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.91384390157814	7.16249947378775	6.90359565837176	6.57083917843142	6.6507637699838	6.49073320577617	-0.663082677170244	0.0105292266315608	0.10413834417674
Merged-chr16-23279970-4	chr16	23279476	23280476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-10494.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.1137415234982	7.20154632593688	7.17908161250533	7.14170074626664	7.38943863715515	7.30641811087055	0.180788514567347	0.444831249217362	0.804512062173139
Merged-chr13-21783935-4	chr13	21783500	21784500	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	-603.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	6.13145448178935	6.81289457669567	6.51646256109485	7.00095159222832	7.52805476008792	6.85912635714735	1.00245131620483	0.0023961599660661	0.0355020794972273
Merged-chr12-36156163-2	chr12	36155574	36156574	+	991.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	751.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	5.05538825757056	5.02684759199251	5.07240410386823	4.90588494837206	4.72386583808536	4.35550284911227	-0.797196990433785	0.0580743087626554	0.311391279569129
Merged-chr10-118050491-4	chr10	118049988	118050988	+	971.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91299.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.16804547293651	5.00464297409789	4.92987053487615	5.14933605791755	4.80732393448206	5.06701747441649	-0.0741613962247518	0.846940533658646	0.964139319360833
Merged-chr19-29675147-2	chr19	29674647	29675647	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22794.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	4.13331276521478	3.97126256170636	3.68202061668707	4.07001457211346	4.0384242023541	3.97274580258526	0.228720561921451	0.661948192466487	0.906507327168392
Merged-chr3-135433062-2	chr3	135432562	135433562	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5170.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	3.07798425724067	2.80299976085424	3.00248958080774	2.9021224715697	2.83034348509212	2.69951561921999	-0.73357331654206	0.314333947759026	0.708700303644741
Merged-chr2-163580352-3	chr2	163579846	163580846	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21968.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	2.9251106658196	2.63056098244691	2.72962738698462	2.55661375866402	2.52458742620486	2.40656186327659	-1.56129044000878	0.0592630148137522	1
Merged-chr1-135691647-3	chr1	135691139	135692139	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28424.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.01274838729986	4.7015611750867	4.9394242205329	4.05710893877461	3.59454667837264	4.16126841325623	-2.61213617496925	7.23819481003874e-07	4.07493717018744e-05
Merged-chr2-94009883-2	chr2	94009383	94010383	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026944, intron 1 of 9)	intron (NM_026944, intron 1 of 9)	847.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	3.63335623453665	3.71033496227658	3.68311954101377	3.66146431958372	3.6839037759571	3.70084082449532	0.0193248530115147	0.971283834627444	0.993727127580947
Merged-chr4-136031445-4	chr4	136030930	136031930	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9781.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	6.80148295417912	7.13884661118949	7.05653684631043	6.90895752167165	7.1773666263893	7.23528805596718	0.16291546204738	0.532021460831003	0.851889573998385
Merged-chr11-4895343-4	chr11	4894839	4895839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172438)	promoter-TSS (NM_172438)	-4.0	NM_172438	107829.0	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	5.55930322728923	5.7877051036872	5.71715414601613	5.80531934362328	5.78539710543484	5.77904135962765	0.179678469514983	0.562331720043397	0.86571315867742
Merged-chr19-7022827-2	chr19	7022327	7023327	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016737, intron 10 of 13)	B2_Mm2|SINE|B2	-3358.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	2.97453950514162	2.95321019947303	3.07410456937308	2.77930768989787	2.83830277822928	3.2001266695033	-0.251944647775083	0.722144597066322	0.928717178651301
Merged-chr6-15746093-3	chr6	15745594	15746594	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	25433.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.60192397864592	3.53608681414189	3.73998006848596	3.4166992715465	3.67616838299336	3.37810025236054	-0.415846828935048	0.48050636500526	0.824543506620807
Merged-chr19-4097265-4	chr19	4096747	4097747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026373)	promoter-TSS (NM_026373)	-104.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	8.24905315095438	8.04994129571437	7.6545168658261	7.81909192933236	7.90301140807564	7.57215266906492	-0.33871556510379	0.190555555670148	0.576950246568724
Merged-chr8-13649348-4	chr8	13648860	13649860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	L1M4|LINE|L1	28227.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.49847693710444	7.34950646061442	7.12928765133775	7.37010501031496	7.29455575489843	6.88896756529238	-0.193706245416208	0.467509822834451	0.818029131900766
Merged-chr6-58831614-5	chr6	58831092	58832092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361967, exon 1 of 23)	5' UTR (NM_001361967, exon 1 of 23)	127.0	NM_001361966	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	6.49464344939852	6.13197606746687	6.19366515628408	6.04805773669464	5.90130092832267	5.98783896517588	-0.527057847886156	0.076876706117776	0.365341079596088
Merged-chr19-28454815-3	chr19	28454314	28455314	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-223410.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.22508369202611	3.0856997395688	3.18399906677859	2.66915542265992	2.91563387578482	3.14359331884085	-1.13594633271096	0.126059126710393	0.474780219563845
Merged-chr2-160646518-5	chr2	160646116	160647116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009408, exon 2 of 21)	exon (NM_009408, exon 2 of 21)	719.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	8.86059203434272	9.23526994460728	8.72893373700475	8.79969190488816	8.95017750681621	8.88262014598994	-0.117090001638785	0.608633593630658	0.885006356798728
Merged-chr18-75382500-2	chr18	75382000	75383000	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	15135.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	2.95116386192662	3.09667022422331	3.05671491903063	3.09116220062958	2.98179690038325	2.94767563208781	-0.123883779361714	0.85303424322746	0.965597129346461
Merged-chr7-102314302-3	chr7	102313800	102314800	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	46476.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	3.33444698612914	3.64183949429947	3.38402089199107	3.37627569145206	3.32449559281404	3.99564588645799	0.469029747927002	0.471050428919647	0.819862448795072
Merged-chr19-55562780-3	chr19	55562291	55563291	+	738.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	139413.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.42206161182674	4.55145547133931	4.51160561469739	4.0246210368541	3.89290321722237	4.65280909447019	-0.714699825807613	0.167965329238745	0.544196679203237
Merged-chr8-14891472-4	chr8	14890978	14891978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	2942.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.21403850003746	8.17152059016377	8.13962978494173	8.10196032598251	8.36091247532431	8.15481056171747	0.0544409808153778	0.798279304527942	0.951930937621884
Merged-chr15-6709266-2	chr15	6708766	6709766	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	885.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	4.52921459461006	4.20867541760348	4.01313674623146	4.44035963542288	4.35470903968559	4.66602198107509	0.537091385931265	0.268509875720272	0.665694542701961
Merged-chr11-97684826-4	chr11	97684313	97685313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1139.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	6.49875303330004	6.01527282199724	6.5313016574374	6.59830846998655	6.47778611280551	6.31431339063154	0.178154934942244	0.557170773156841	0.864089443400196
Merged-chr10-80691854-2	chr10	80691354	80692354	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	9966.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	5.30801574641273	5.1579617512891	5.15759915943742	4.99840201718773	4.98682873224828	5.08661422555751	-0.401681911941775	0.264127585903831	0.661984744638823
Merged-chr5-110058128-4	chr5	110057635	110058635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41834.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	5.54863523481973	5.65794537560356	5.87389623844872	5.89687624487217	5.91100298625375	5.9580354807377	0.41468218617611	0.179926675187353	0.561418186859762
Merged-chr16-92021163-4	chr16	92020676	92021676	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-37146.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	5.8823131028087	6.01664635843505	5.7241089121651	6.18461376428355	6.32051229091145	5.73066717769633	0.396522532428698	0.227387768974587	0.622496973615609
Merged-chr2-132169367-4	chr2	132168888	132169888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24068.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.17651590572116	6.29888440928768	6.37459118037799	6.41367362915279	6.55827617889353	6.37747051973794	0.292053653819397	0.284709835121592	0.682421085006849
Merged-chr6-113341734-4	chr6	113341252	113342252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133926, intron 2 of 11)	intron (NM_133926, intron 2 of 11)	2170.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	6.70846046323488	6.71895893992604	6.45210723447616	6.19290985607015	6.20139382179153	5.99999610853639	-0.812986238242285	0.00363632540376283	0.0485132003184563
Merged-chr7-44930842-2	chr7	44930342	44931342	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-1352.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	3.71757195444279	3.59787969918818	3.96023423851055	3.53276048896467	3.56640283488955	3.98294514535702	-0.195065094220492	0.734612501881446	0.932557032428793
Merged-chr5-99235656-3	chr5	99235172	99236172	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17255.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.61147088044364	5.38052380647156	5.94226798627954	5.79467823791989	5.66888493563189	5.89047277922553	0.237945064644409	0.484555994375345	0.826955188719244
Merged-chr2-13786164-4	chr2	13785664	13786664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145838, intron 2 of 7)	L1_Mus4|LINE|L1	7356.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	4.09903195209073	3.77587141150917	3.59024473047119	3.69237939133184	3.62489409379205	3.87584653431367	-0.378518786263807	0.502801961376953	0.836691193058519
Merged-chr3-10331302-4	chr3	10330802	10331802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001010834)	TTS (NM_001010834)	137.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	5.91663716533834	6.13019415723143	6.0735210206476	5.79567805874383	5.79603451078787	5.45207652415201	-0.600377725429269	0.0588778986016704	0.31408592042876
Merged-chr8-39955681-3	chr8	39955182	39956182	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	-313004.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.51324798575634	3.5788271923678	3.64065579166649	2.95155631690349	2.80216484819256	3.61249316360182	-1.37954522588264	0.303836042224481	0.700300249727315
Merged-chr10-58444696-2	chr10	58444196	58445196	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-2156.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	4.67418604998489	5.06242442113945	4.81857332958049	4.36353305776476	4.30378598209869	4.69634846926461	-0.987140363114156	0.0244473361431034	0.184286586007886
Merged-chr5-122400374-3	chr5	122399839	122400839	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8461.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	6.35327552767915	6.49502326681956	6.75742356777102	6.53603471820145	6.5919966627896	6.33876345344677	-0.0576185264404063	0.837907882925153	0.962287815859056
Merged-chr11-118446057-4	chr11	118445568	118446568	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 2 of 2)	intron (NR_045902, intron 2 of 2)	2534.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	3.21676060769682	2.90590325628614	3.03276150997298	3.12597637503687	2.93722451551146	3.1641541617244	0.0686979566421993	0.919541666483033	0.982034101943453
Merged-chr19-7307244-3	chr19	7306751	7307751	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-11804.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	2.74792577332737	2.63578040116349	3.0184554038591	2.60736689925784	2.52393334584128	3.03522194794832	-0.351538334269766	0.660202776188857	0.905906890165946
Merged-chr5-8893725-4	chr5	8893241	8894241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008830)	promoter-TSS (NM_008830)	20.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	5.17898676612661	5.08478416295162	5.06301450341013	5.26416533776352	5.18557484185764	4.98239377346085	0.091907286463749	0.800127568891805	0.952408432552781
Merged-chr12-98900779-2	chr12	98900279	98901279	+	832.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 1 of 43)	CpG	705.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	2.97835245116595	3.02410239958594	2.67062247551892	2.7933588086547	2.70509225097608	2.99676500255137	-0.3537369510833	0.638625807569672	0.897629625437208
Merged-chr13-55635009-4	chr13	55634590	55635590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282055)	promoter-TSS (NM_001282055)	91.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	5.39625070695469	5.10207653609985	5.6011023855207	5.61859528873754	5.30579834923947	5.41192356021173	0.152287922673084	0.675392123165726	0.912152821313949
Merged-chr17-37246868-4	chr17	37246361	37247361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14493.0	NM_146512	258505.0	Mm.353371	NM_146512	ENSMUSG00000058802	Olfr97	MOR156-2	olfactory receptor 97	protein-coding	3.72287320452118	3.60386898455342	3.61937755112233	4.22045029171267	4.2163064523704	4.01501652687721	1.59187712610883	0.00234837316108789	0.0349121733049492
Merged-chr7-13034787-4	chr7	13034319	13035319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026885)	promoter-TSS (NM_026885)	-42.0	NM_001360731	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	7.24053786026927	7.67440231080485	7.57795970078718	7.40831018436329	7.64022318239986	7.79147460981873	0.160018706477691	0.532543576030545	0.851971173271146
Merged-chr16-90677435-4	chr16	90676993	90677993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49878.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	6.01252704016798	6.06683626630508	6.07472612064982	5.54060512156455	5.51681165397897	5.44200225796749	-0.988833825456457	0.00125746796627781	0.0215246645830166
Merged-chr1-134075800-4	chr1	134075306	134076306	+	798.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	3349.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.94326436255647	3.91176346035849	4.13826494372693	3.82738356633992	3.75807026136814	3.92953361311298	-0.498382915644811	0.329139332146544	0.721152738507735
Merged-chr9-40743851-4	chr9	40743292	40744292	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-57481.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.3065079951349	7.2936760390797	6.9038171497007	5.69018991307808	5.45304696269142	5.45008105567143	-2.75170218034571	1.31652039376554e-19	8.11444658699576e-17
Merged-chr17-37203064-3	chr17	37202594	37203594	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5128.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	3.42902696581477	3.67297727780009	3.88823890948635	3.55056902188375	3.69168185834521	3.90997829142413	0.170258024026549	0.768041221320781	0.942778360482394
Merged-chr9-88406065-4	chr9	88405586	88406586	+	679.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 8 of 28)	MER5A1|DNA|hAT-Charlie	32865.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	3.66412461572103	3.65664418000014	4.0532764147746	3.78386522382054	3.85644786983101	4.120266690778	0.40100087873285	0.462299322514805	0.815159087955196
Merged-chr8-71366080-2	chr8	71365580	71366580	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-768.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	3.85866104302645	3.7163265662176	3.91316028742064	3.73949995353448	3.67661602450628	3.83590115067701	-0.26341471967216	0.617188622147526	0.888787504465168
Merged-chr10-95418034-4	chr10	95417518	95418518	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045339, intron 1 of 4)	intron (NR_045339, intron 1 of 4)	643.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	3.69184250538212	3.49486239659643	3.33359893535742	4.09932915558479	3.80088445625502	3.70806371825986	1.20246436448983	0.0429937661346956	0.26006290291769
Merged-chr1-34483949-2	chr1	34483449	34484449	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14463.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	5.414978448461	5.48752788158554	5.3361008976	5.78671739121375	5.87045267413922	5.49562148837794	0.597718279907629	0.0721034329437741	0.352688404466848
Merged-chr14-55581321-2	chr14	55580821	55581821	+	704.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_033146)	TTS (NM_033146)	2827.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	2.9320535085338	2.98152507993	3.40383032274364	2.93671764695867	2.77069917276365	3.26956830747949	-0.501375917381396	0.496115737006684	0.832884389427821
Merged-chr3-51289313-3	chr3	51288811	51289811	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-11797.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.26949024940364	2.97374772104319	3.3422799596956	3.39609774836228	2.7592129019106	3.24802730628359	-0.158525198358419	0.831756502913994	0.960478468368024
Merged-chr17-35170114-2	chr17	35169652	35170652	+	791.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361501)	TTS (NM_001361501)	-5275.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	4.68847859024123	4.69021354822436	4.62942139696177	5.22389204777983	4.99338333946507	5.38343943574883	1.1532518319964	0.00337649759185635	0.045922133315329
Merged-chr5-30888998-4	chr5	30888497	30889497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-9.0	NM_001048192	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	5.43194473731501	5.21950647743286	5.35066041826665	5.03980361388646	5.15423682687002	5.25995414034009	-0.376027401915452	0.287287000988774	0.68462852545501
Merged-chr16-31066118-1	chr16	31065618	31066618	+	780.666687	f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	15314.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.7448440388208	4.80538310130355	4.87177861792898	5.09610485376017	5.15496982158377	4.86136757761388	0.545222562418364	0.154351028317842	0.523641596057681
Merged-chr6-53759769-4	chr6	53759273	53760273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Eulor8|DNA|TcMar?	61052.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	4.23829815907153	4.64680564776097	4.00128012310266	4.36410244563771	4.68999347581983	4.67291933556591	0.619473279123458	0.217626225087382	0.611645289860174
Merged-chr19-14585476-4	chr19	14584981	14585981	+	984.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	11732.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	6.45100594007566	6.50534990518498	6.42393056382688	6.74492959700225	6.92032937343691	6.97189380201188	0.659690168395098	0.0102814377119478	0.102430300423342
Merged-chr16-29454972-4	chr16	29454459	29455459	+	963.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172613, intron 11 of 29)	intron (NM_172613, intron 11 of 29)	-76227.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	4.3600056979431	4.63399918487038	4.78562636102435	4.22916284079482	4.2134102634548	4.70860319653536	-0.516996746578911	0.274876603354619	0.672249137698943
Merged-chr15-3259742-1	chr15	3259242	3260242	+	688.0	f0_balb.idr	Intergenic	Intergenic	-11025.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.74105991660011	3.71800827280954	4.07635890474783	3.4922433104213	3.52301435608591	3.78651505947147	-0.851647913216371	0.133769033055175	0.48906330450363
Merged-chr3-89831369-5	chr3	89830830	89831830	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172530)	promoter-TSS (NM_172530)	-40.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	3.48691319709252	3.58625381329961	3.64768843959887	3.83159546744604	3.57187621000332	3.66538448437228	0.415376516194526	0.455417203480313	0.810921349608173
Merged-chr18-26864975-4	chr18	26864462	26865462	+	839.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110805.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.77359103463409	3.80455588298507	3.83858609813719	4.21115491151297	3.80161926052606	3.90901499531106	0.557869818269904	0.288178080199919	0.685555138616531
Merged-chr5-43782196-7	chr5	43781709	43782709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159963)	promoter-TSS (NM_001159963)	-60.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	8.03414656020115	8.03389760422607	7.75610902433736	8.0320130271347	7.81402656118835	7.78619695663599	-0.100235563569329	0.661274948267544	0.906313637571144
Merged-chr17-24140996-3	chr17	24140516	24141516	+	851.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	578.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	6.51961306835345	6.41795893255252	6.49611509869638	6.65965256622389	6.2593745084401	6.31022825189502	-0.0892020877320068	0.75264599209488	0.938346259574037
Merged-chr9-121312714-2	chr9	121312214	121313214	+	953.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	15212.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.36004237617308	3.10478239127734	3.18546190027797	3.09808359383113	3.19829890779329	3.57744768898118	0.316003850252073	0.632082829357171	0.895435008062156
Merged-chr13-91656815-4	chr13	91656305	91657305	+	782.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360775, intron 5 of 16)	intron (NM_001360775, intron 5 of 16)	-84716.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.5789925425505	4.97202791506462	4.64677084581063	4.6441907750361	4.22752597702375	4.63279357405554	-0.583194998345756	0.197001215650846	0.584870414852249
Merged-chr14-54883756-2	chr14	54883256	54884256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007537, intron 1 of 3)	intron (NM_007537, intron 1 of 3)	331.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	5.73906440811082	5.23153769441211	5.62851721906234	5.1474034847341	5.20698556380122	5.50309578521113	-0.509937744397754	0.168523353182046	0.545164589147318
Merged-chr5-31495214-2	chr5	31494714	31495714	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133756, intron 1 of 13)	L2b|LINE|L2	473.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	3.72853601839331	3.89700465707982	3.96605904668156	3.99302073110655	3.70178852256193	3.88922924237665	-0.00434139499605052	0.993414841519715	0.998651348330892
Merged-chr7-3816650-1	chr7	3816150	3817150	+	837.0	f0_c57.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	28401.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	1.97451895064447	1.87255706234956	1.9527842727011	2.10608754595732	2.04206964918554	2.29499349938086	1.73313699222564	0.0734464123331071	1
Merged-chr9-20645345-4	chr9	20644819	20645819	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	516.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	7.79023182758673	7.93360675163004	7.6036570938872	7.66678660892738	7.90456701614059	7.75179038784375	-0.0107749833959247	0.962959651705499	0.991018409557203
Merged-chr7-143020372-2	chr7	143019872	143020872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128080)	TTS (NM_001128080)	14713.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	6.56734795052588	6.3055620872067	6.2908924734066	6.57186237206616	6.74145866165786	6.17958364546841	0.217887011029999	0.470096526911825	0.819289842432989
Merged-chr11-97718545-4	chr11	97718038	97719038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	15104.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	6.49192566464545	6.07483751446317	6.15535414549129	6.41186741099305	6.5162492234307	6.00595865476198	0.138027084855767	0.662111419762094	0.906626409326844
Merged-chr7-24237588-3	chr7	24237068	24238068	+	772.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020262)	promoter-TSS (NM_020262)	30.0	NM_020262	56869.0	Mm.103751	NM_020262	ENSMUSG00000074283	Zfp109	-	zinc finger protein 109	protein-coding	3.06878292504165	3.08986604594274	3.13338869924543	2.78953275530386	2.8738195145515	2.91122157187402	-1.14874774089172	0.0967592557927149	0.41464408281404
Merged-chr9-99436536-4	chr9	99436040	99437040	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008624, exon 1 of 6)	5' UTR (NM_008624, exon 1 of 6)	172.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	3.2696349108215	3.25867936135763	2.99315310108914	3.12538162277307	3.0159351368263	3.35872351469076	-0.0715650811518671	0.915058028236213	0.980959026698783
Merged-chr2-27733909-2	chr2	27733409	27734409	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	23326.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.42525652401532	5.41376191376243	5.82269982323709	5.47943584280863	5.351546097913	5.86063709967653	0.0239351700439564	0.947378392691807	0.988008807662239
Merged-chr2-145865321-1	chr2	145864821	145865821	+	596.0	f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-37920.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.54250796278224	3.81088821729321	3.71473383238284	3.4787026283497	3.45482281026967	3.52036913973582	-0.754933044175193	0.183755148979064	0.567117371996399
Merged-chr8-105857952-2	chr8	105857452	105858452	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2581.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	4.95113584178794	4.67337467568831	4.65533399590869	5.04366369816475	4.87887718046707	4.76423227637489	0.293683910813147	0.466797399229723	0.817652165708111
Merged-chr9-64341114-4	chr9	64340624	64341624	+	953.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177784)	promoter-TSS (NM_001177784)	133.0	NM_001001295	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	7.36873296951083	7.64947241063994	7.38308821102267	7.23657690901813	7.14971211571392	7.17433884540701	-0.431989881389169	0.0697400086722358	0.345679790409209
Merged-chr1-91259987-3	chr1	91259493	91260493	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 3 of 10)	URR1A|DNA|hAT-Charlie	9427.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.14163570456421	2.91325661462876	3.09969822377815	3.09225573644255	3.01983759539522	3.17152536663145	0.172674226956133	0.794321004658704	0.950669146394332
Merged-chr11-76884722-3	chr11	76884223	76885223	+	894.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-19822.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	4.12104217022507	4.5802774154171	4.34144827357424	4.04653576315653	3.67080934099581	3.76968809199725	-1.54016722108444	0.00386897270290418	0.0506656406457745
Merged-chr9-48282694-2	chr9	48282199	48283199	+	922.9166869999999	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	58199.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	2.21403971249404	2.33082378986594	2.38705001444811	2.52679206631802	2.2579953148718	2.52564529818926	0.826318972240023	0.329614900148514	1
Merged-chr19-45007887-2	chr19	45007387	45008387	+	878.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153796, exon 1 of 5)	exon (NM_153796, exon 1 of 5)	-1230.0	NM_001348259	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	2.35799854592142	2.2555240415979	2.31010610050536	2.42727130925112	2.30920935230676	2.51368351814799	0.693464104819926	0.403375672164521	1
Merged-chr11-69030809-2	chr11	69030309	69031309	+	885.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013256, exon 13 of 23)	exon (NM_001013256, exon 13 of 23)	-14828.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	4.60897878233934	4.26111678816302	4.49947890692068	4.2383525448621	4.23297365063741	4.48429736258066	-0.383010079137182	0.402692209548716	0.778187871525142
Merged-chr7-25784277-4	chr7	25783793	25784793	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4440.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	5.46732629190412	5.93591321173226	5.60023354405173	5.85462386763792	5.94839530744411	5.87411115198356	0.365772964471567	0.265731809422132	0.66350545993919
Merged-chr10-63240220-2	chr10	63239720	63240720	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3577.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	3.39270088786173	3.40431843816701	3.12889807378621	3.37457857614249	3.23641370587909	3.49106482289491	0.175153165860291	0.780321425219392	0.945976443458414
Merged-chr2-143063034-4	chr2	143062544	143063544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021335)	promoter-TSS (NM_021335)	-25.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	6.60880718204523	6.93655343683857	6.65437385907241	6.697540932264	6.72340459122434	6.40526420745756	-0.190310939200676	0.491677600961131	0.830651911890936
Merged-chr5-66038415-4	chr5	66037929	66038929	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 3 of 6)	intron (NM_139065, intron 3 of 6)	-34144.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	3.54037272758155	3.40090072734448	3.38674871333181	3.42148531481267	3.62266466159211	3.67214819875642	0.469857423641373	0.41880124907503	0.788755230826602
Merged-chr18-53178213-2	chr18	53177713	53178713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1921.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.51030315611145	4.71640953369483	4.56661058795904	5.23763395450914	5.45162260864822	5.47143042211588	1.6937954484509	1.24934425054149e-05	0.000484414894683393
Merged-chr2-32287565-2	chr2	32287065	32288065	+	722.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	504.0	NR_110965	72931.0	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	6.76514045961689	6.72880628071945	6.64520622621702	6.76107252464477	6.77871800966943	6.45321604212133	-0.053646390594189	0.838861942807104	0.962619500530269
Merged-chr8-34147598-3	chr8	34147108	34148108	+	649.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-869.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	5.84737220630093	5.86101549226006	5.65684509466508	6.4520774232883	6.50662621873739	6.17332310335321	1.01107328043448	0.000700988959546383	0.0136855676550764
Merged-chr14-51884873-5	chr14	51884442	51885442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029990)	promoter-TSS (NM_001029990)	100.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	6.04774311247146	6.14410390543616	5.73832432520134	6.13526869343777	5.69408789241112	5.92985920324759	-0.123022873644387	0.705876855942509	0.922834459892351
Merged-chr8-126616385-2	chr8	126615885	126616885	+	623.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22949.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.60623876162537	4.38275366324336	4.48993642774679	4.55915752916427	4.5967561827801	4.75481026572813	0.336563355449451	0.425952835017105	0.793472486678174
Merged-chr16-21728070-4	chr16	21727574	21728574	+	908.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33409.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.80347913264746	4.87227022134012	4.40505761315315	4.78401366606462	4.56898260004399	4.42730873386571	-0.270532802534297	0.54160676287384	0.856866097372447
Merged-chr1-85277208-1	chr1	85276708	85277708	+	614.0	f1_balb.idr	Intergenic	Intergenic	-6642.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.36190402867923	3.59142511475583	3.63015861958005	2.86706641326118	2.73158483670402	3.79248599214934	-0.847850733181601	0.710960122091783	0.924511716032697
Merged-chr4-59531335-2	chr4	59530835	59531835	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	18029.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	3.3016658238945	3.73241868783779	3.5887761995837	3.67956591597974	3.30680212953685	3.71064685317183	0.0662548118350987	0.914559382024236	0.980912729144991
Merged-chr7-19748566-2	chr7	19748066	19749066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	1007.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	3.18696274351995	3.10647674114333	3.30095043146077	3.38573888892451	3.22140631198045	3.31640073735469	0.460572644586273	0.458679921984734	0.813198366788948
Merged-chr9-45102315-1	chr9	45101815	45102815	+	766.666687	f0_balb.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15561.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	4.49832687785865	4.55252191208132	4.52384535176385	3.67184488772896	3.3274995735092	3.49866441702662	-3.56040615246739	1.26267000840936e-08	1.11533169914783e-06
Merged-chr12-85231597-2	chr12	85231097	85232097	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	12116.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	2.07020503728438	2.31677834502345	2.27961071990125	2.00880677173058	1.87257125583375	2.09127682759015	-1.9786047368282	0.0508818024887381	1
Merged-chr9-25152761-4	chr9	25152269	25153269	+	732.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-988.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	6.92134242714344	6.93955645127253	6.83893113383998	7.13756725459266	7.19329740188737	6.89743115918283	0.284980178837991	0.2500750067746	0.647284075145455
Merged-chr5-27194234-2	chr5	27193734	27194734	+	800.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	MTE2b|LTR|ERVL-MaLR	-67701.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	2.741088039753	2.90119586794087	3.10751586004749	3.07235450631611	2.69555385876324	3.12350635347051	0.246261346899881	0.739734190253322	0.934245371298156
Merged-chr14-17912937-3	chr14	17912438	17913438	+	645.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-68706.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.26525717017449	3.32200801948176	3.38531751263268	3.56941341581926	3.27498816041476	3.34378160062663	0.306233514309564	0.614091006431206	0.887411760755953
Merged-chr13-19690212-4	chr13	19689708	19690708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181591, exon 7 of 17)	exon (NM_181591, exon 7 of 17)	7552.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	5.66344476655594	5.8493921914176	5.5094617656582	5.8534739288935	6.04503059164496	5.74554056575182	0.367788778526455	0.25420935702984	0.651179145391095
Merged-chr2-11332660-4	chr2	11332156	11333156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6833.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	6.89315035164711	7.2225159145644	6.49495141542505	6.74850635234115	6.70260570287077	6.1686504745831	-0.528110348172774	0.108025273170066	0.439002047860067
Merged-chr5-143520652-2	chr5	143520152	143521152	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	7341.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	5.19795543644586	5.32837581524794	4.90464805671623	5.04215326694841	5.16625038383684	5.00932412393643	-0.182323713265771	0.628868452709295	0.893945342282012
Merged-chr11-101087295-4	chr11	101086782	101087782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011550)	promoter-TSS (NM_011550)	-8.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	7.03759665197211	7.1347708988816	6.90764799254518	6.98770409672334	6.98463683801733	7.26948215820613	0.067529624142816	0.788119017480029	0.948862819864542
Merged-chr3-68794173-2	chr3	68793673	68794673	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32678.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	2.86480929147495	3.14173665194912	3.07723700932181	2.89106887325593	3.09194344813559	3.20514646961864	0.150544371582148	0.826912991065744	0.959278302444461
Merged-chr9-66896263-3	chr9	66895762	66896762	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23443.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.64804741886245	6.82538877237245	6.30028219483914	6.67591999955826	6.89925539908775	6.645288840295	0.203557811119019	0.477154841433564	0.823186444058601
Merged-chr9-92457466-3	chr9	92456955	92457955	+	928.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178711)	promoter-TSS (NM_178711)	77.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	3.89880745023343	4.00821875800814	3.94902736278562	3.64755418851026	3.41443105768505	3.3630619057552	-1.62568741833559	0.00480511454353173	0.0595862847895958
Merged-chr8-46936152-4	chr8	46935572	46936572	+	878.034058	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50815.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.32907279579449	6.44686382562734	6.48689895275581	6.20764507881141	6.3520027455433	6.45822215019487	-0.131134172868051	0.631405382346258	0.895122791781359
Merged-chr15-27676953-1	chr15	27676453	27677453	+	569.0	f0_balb.idr	intron (NM_198301, intron 1 of 6)	B4A|SINE|B4	4589.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.5250736762246	4.41473649768816	4.71501804633928	4.4259381199863	4.17552698084481	4.66969981477036	-0.311626360941969	0.496499647154993	0.833052561713032
Merged-chr12-105684104-4	chr12	105683611	105684611	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029654, intron 1 of 41)	intron (NM_029654, intron 1 of 41)	1130.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	6.61551083591005	6.52846615098106	5.944982395318	6.33496988479287	6.29470782327516	5.6308827846181	-0.443474964376974	0.224584508207963	0.619438735049331
Merged-chr14-70604666-4	chr14	70604185	70605185	+	840.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001252663, exon 14 of 14)	3' UTR (NM_001252663, exon 14 of 14)	-4850.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	3.19616155606363	3.00783056823706	3.07322923708491	3.10709925505877	2.89728761761136	2.96424457245933	-0.48267902812372	0.474742032752369	0.821664499521211
Merged-chr18-53246625-4	chr18	53246112	53247112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	950.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.31803620000405	8.26302637412671	8.0445484310228	8.25984280627397	8.65516571916496	8.0706456751613	0.2005191994709	0.423187974085025	0.791864373204703
Merged-chr9-94363702-2	chr9	94363202	94364202	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174379.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	4.05765281709454	3.67174848282436	3.71763445648496	3.85086674118006	3.54493824909887	3.94014581928389	-0.1571814437163	0.781109295532239	0.946145838976425
Merged-chr19-46513128-2	chr19	46512628	46513628	+	607.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 3 of 6)	exon (NM_053100, exon 3 of 6)	11480.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.89864425506726	3.82602078863931	4.09981255569355	3.90285125944566	3.78209036033131	4.0315378983738	-0.114346368531114	0.824033677421347	0.958461473318254
Merged-chr2-167319191-4	chr2	167318698	167319698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	29980.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	8.07969476324707	8.00116963387411	7.41743762928023	7.55728221586431	7.63629282996257	7.19448568817492	-0.561901097017553	0.0468903151129743	0.27413748413413
Merged-chr6-146913566-1	chr6	146913066	146914066	+	616.5	f0_balb.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	25072.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	3.24538233912954	3.02459087355659	3.00195597141245	3.23314601823396	2.91187665325698	3.19506772299274	0.0813440790580449	0.904954552805676	0.978186201733838
Merged-chr8-111061793-4	chr8	111061266	111062266	+	855.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5427.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	3.0023327401964	3.04354345458021	3.05338537859645	3.10428843977992	3.14518777861401	3.1833897820426	0.496743850947661	0.441924335225201	0.803014502214766
Merged-chr8-119839793-4	chr8	119839309	119840309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	770.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.9574702900826	8.12672374015049	7.68273611489344	8.10075324913035	8.08597354487008	7.81149748485835	0.0969822999478886	0.687515689466272	0.917163788391121
Merged-chr4-132794224-4	chr4	132793716	132794716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	2148.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	8.37969965611171	8.4736147597293	7.99893089124379	8.54078122881352	8.9269283399861	8.17430184820869	0.398497998960819	0.150553762877025	0.51745962639137
Merged-chr9-13835463-4	chr9	13834972	13835972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 5 of 9)	intron (NM_176836, intron 5 of 9)	7756.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	5.7794146118619	5.76194337899328	5.77573632829482	5.69251756903605	6.12198252050932	6.02746105692943	0.341089064996682	0.279105054352895	0.67658480298895
Merged-chr10-95416854-4	chr10	95416365	95417365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045338)	promoter-TSS (NR_045338)	-8.0	NM_007706	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	5.70741040098581	5.41247230685425	5.14771624864356	5.69846982961778	5.63157060088632	5.250383331514	0.18192409703415	0.626339892870136	0.892894904844064
Merged-chr15-66808989-2	chr15	66808489	66809489	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	22840.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.70718005650172	3.97617086777445	3.9891119251703	3.90743609580839	3.59088218491315	3.81401678592083	-0.389875284917001	0.471451031878901	0.81999367601546
Merged-chr13-3807073-4	chr13	3806520	3807520	+	749.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2702.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	2.55486593069387	2.6805928635633	2.895472957114	2.78766178810683	2.62805973469626	2.60385907182862	-0.198376386974254	0.795968001051321	1
Merged-chr7-98341576-4	chr7	98341084	98342084	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19704.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	5.67231091852425	5.72776230190855	5.29255072316959	5.17824406632465	5.43279254764044	5.22113039433222	-0.576344564859184	0.107098711530518	0.436731001427041
Merged-chr1-171579742-1	chr1	171579242	171580242	+	639.0	f0_balb.idr	intron (NM_018729, intron 6 of 8)	intron (NM_018729, intron 6 of 8)	20549.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	3.55333105281239	3.33572364429202	3.55939005476778	3.28334564339032	3.07809329326458	3.4733373528427	-0.805404152270702	0.201776146673398	0.591404755799786
Merged-chr4-32565176-4	chr4	32564683	32565683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	6479.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	7.83906647872671	7.77085877124467	7.76506195050237	7.85017009199912	7.93557867154975	7.82143977841226	0.11425410990797	0.590664908769858	0.877301111216348
Merged-chr13-60684328-3	chr13	60683832	60684832	+	890.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	82121.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.27700071251737	5.82898997080666	6.72797769434455	6.65285774909856	6.8603108511455	6.47788535987062	0.574998285592922	0.0922847618773466	0.404702775708351
Merged-chr16-55809952-2	chr16	55809452	55810452	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	12186.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.11131912482943	3.14762321168913	3.25315990720701	3.18484700713169	3.08315467140811	3.37701343086666	0.19006702194496	0.766104540415756	0.942366894267556
Merged-chr12-102469089-4	chr12	102468577	102469577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199004)	promoter-TSS (NM_001199004)	-57.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	8.1539505090901	8.18040755161427	7.86844074306411	7.84144917343442	7.76927948434409	7.58029817254828	-0.486874384905644	0.0344736203650013	0.227490336164654
Merged-chr9-65787633-3	chr9	65787116	65788116	+	679.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	39948.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	3.29020611377708	3.33042597621529	3.49320666142506	2.98553591647709	3.05883372395336	3.24326937807965	-1.17104412402697	0.0715245815159767	0.350858143464767
Merged-chr5-31908202-3	chr5	31907699	31908699	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	210149.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	3.2551572207936	3.08018848322607	3.48181478049503	3.45695304901154	3.47543397774775	3.33346546329206	0.596133118429385	0.341177053614044	0.730686899066382
Merged-chr14-55091115-2	chr14	55090615	55091615	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	933.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	3.3873054566998	3.16080306695702	3.58645100590328	3.34038712789191	3.04362274927902	3.22821959226699	-0.714106667455617	0.273893647007879	0.671305269086912
Merged-chr11-102406660-2	chr11	102406160	102407160	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	857.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	5.78125090277731	5.39762038364262	5.18729744933386	5.7019668399085	5.73449162711699	5.4868108042153	0.298506253551131	0.408080061773157	0.781926100186554
Merged-chr4-3786878-3	chr4	3786370	3787370	+	889.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	48785.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.19120777245689	3.28806990045817	3.29524518592809	3.21382721904756	2.93887690741527	3.13778461122071	-0.694073775788292	0.287089834199835	0.684323804399215
Merged-chr12-35026146-4	chr12	35025649	35026649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21040.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.50543861378444	6.42889808838668	6.20852054077719	6.08047462541336	6.42485600484811	6.44508626959693	-0.110228929240438	0.705033710927328	0.922687087430656
Merged-chr11-19972604-4	chr11	19972120	19973120	+	816.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	48178.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.81615739861317	2.70485726893851	3.15557087754974	2.96673700508866	2.49393555385733	2.69702733821682	-0.841124635599149	0.298310384523939	0.69500092474273
Merged-chr14-29978459-4	chr14	29978024	29979024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027493, exon 1 of 13)	exon (NM_027493, exon 1 of 13)	187.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	7.23224337797529	7.69559081103833	7.42394342184392	7.21675992229147	7.38596495300305	7.18484818984469	-0.292172104840019	0.252505263106878	0.649921954382832
Merged-chr2-49276217-4	chr2	49275710	49276710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290656, intron 6 of 9)	intron (NM_001290656, intron 6 of 9)	30310.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	3.29366401222424	3.20813966637676	3.23320059018365	3.219990673303	3.06439969270031	3.4143246056371	-0.055616534089032	0.930304200282916	0.984485771257693
Merged-chr3-96555070-1	chr3	96554570	96555570	+	570.0	f1_balb.idr	TTS (NR_040409)	TTS (NR_040409)	-2887.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	2.79599984578093	2.8557477869579	3.00750719891607	2.86921049646984	2.98263589236323	3.24444732758176	0.710570603832727	0.311387426726107	0.706465219571547
Merged-chr14-46884242-4	chr14	46883730	46884730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 1 of 12)	CpG	1265.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.66848548635107	6.38877228387088	6.77545554972647	6.89274300486004	7.0471092703419	6.92066882363981	0.53895145291306	0.0416076727276724	0.255062467163282
Merged-chr1-180771934-4	chr1	180771447	180772447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41658.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.9901123658731	4.90433794178161	4.91186071340473	5.24523428569027	5.08575855011977	5.18566850395349	0.496431330475064	0.173991666648322	0.553210993472106
Merged-chr14-33216526-4	chr14	33216020	33217020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-303.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.97319069655547	6.16762087434783	6.22373914737303	5.4927580435894	5.1843464916872	5.81337117404297	-1.11701006085272	0.00114468440085285	0.0200015385199718
Merged-chr9-25156635-2	chr9	25156135	25157135	+	970.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.15787628515048	4.28662833995166	4.39951504083034	4.11413313691664	4.58482509493006	4.24572162750659	0.164345437697897	0.732534270808355	0.931782229960786
Merged-chr16-43109523-4	chr16	43109016	43110016	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	Lx3B|LINE|L1	-137768.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	3.31276556797147	3.63488128037436	3.31560567868734	3.3390131835254	3.30834974784593	3.14460287721213	-0.643932437582034	0.310766555990646	0.706023261795061
Merged-chr2-168208765-2	chr2	168208265	168209265	+	722.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310084)	TTS (NM_001310084)	-1653.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	2.74602268748269	2.99263712936485	3.05751562165684	2.80945671355256	2.79042174119136	3.28974615310829	0.192642729621347	0.795616346912768	0.951227728517696
Merged-chr10-98781145-4	chr10	98780660	98781660	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133482.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.50921182452481	4.61907623570753	4.35529004694196	4.43088113275533	4.6726637193099	4.377715186365	0.0113145463593181	0.979589455431639	0.995282790460533
Merged-chr1-91024538-2	chr1	91024038	91025038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25811.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.8040409950153	6.65183616437402	6.532609171844	6.45500144280535	6.58453531526579	6.16907953948503	-0.392159653628207	0.165804316820209	0.540944384958279
Merged-chr7-71872507-3	chr7	71872011	71873011	+	923.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37184.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.06907131884848	3.56060373656429	3.3258322478719	2.7508977357551	2.56694502422562	2.79427023788124	-3.73068967675007	5.75954950286749e-05	0.00177233947867825
Merged-chr8-121832773-5	chr8	121832264	121833264	+	867.9500119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3195.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	3.65742101012168	3.93454732295389	3.98807402577357	4.71991932175661	4.30413764027629	4.00788903679093	1.46256424191547	0.00660179803009674	0.0748905808436659
Merged-chr16-10451995-2	chr16	10451495	10452495	+	849.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4633.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.29146864804248	4.58274275951561	4.50635903602989	4.81856801226045	4.94808402367113	4.81542294426	0.947907775748377	0.0228968011277831	0.176685247912508
Merged-chr11-115142173-4	chr11	115141655	115142655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8163.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	6.41188479344141	6.00660452855227	5.80622512914065	5.88754155879355	5.98784174417754	6.10841240705977	-0.20134609680148	0.535740092922173	0.853668337370661
Merged-chr8-70548293-2	chr8	70547793	70548793	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	8618.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	3.9211430041614	3.76008390714935	3.7476274595879	3.28050034151492	3.23177676492434	3.4416690820905	-1.90461271083346	0.00151850415284171	0.0249268541047681
Merged-chr1-172342814-2	chr1	172342320	172343320	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	1610.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	4.60961020365625	4.75631477629945	5.2727559589151	4.39425789596211	4.45780658005899	4.77187363336025	-0.828840022597567	0.070519374037275	0.348051683748595
Merged-chr19-8880921-4	chr19	8880425	8881425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160356)	promoter-TSS (NM_001160356)	8.0	NM_001160356	107197.0	Mm.381181	NM_001160356	ENSMUSG00000071654	Uqcc3	AI462493|Cbp4	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding	5.63069203392785	5.94718919818113	6.11570377109848	5.80003534401823	5.86275942475646	6.09348498445117	0.0233639441923513	0.942480995935151	0.987202156853573
Merged-chr8-122912247-4	chr8	122911745	122912745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63871.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.48816984249218	6.10984746087307	5.81949421820847	6.60668856589708	6.4762053960105	6.31035706335536	0.478599682905283	0.135234601980566	0.491349574837972
Merged-chr8-84414409-3	chr8	84413906	84414906	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-958.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	7.0878472289334	7.0333345474785	6.8580160483302	4.41284007184065	4.05482947331536	4.91821599896257	-5.76070879212428	1.95866607630189e-29	1.0186042929808e-25
Merged-chr16-20099303-5	chr16	20098807	20099807	+	852.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029436, intron 1 of 7)	intron (NM_029436, intron 1 of 7)	1753.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	5.06811246195962	5.03685130700037	5.02007656765582	5.17724647848189	5.1582655084695	5.21957259436057	0.292122669988776	0.41157703832067	0.783993055982259
Merged-chr8-116263559-3	chr8	116263060	116264060	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-241455.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	4.05783286336989	4.21837145629565	4.1675034576809	4.39920645586636	4.04063854858317	4.41098770425569	0.374637627696227	0.43642373418034	0.799479240757292
Merged-chr1-37419621-4	chr1	37419131	37420131	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198006, exon 3 of 3)	3' UTR (NM_198006, exon 3 of 3)	10472.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	2.90810210192582	2.83019383273264	3.28509119456158	2.92280114032205	2.83583615090822	3.02902856886232	-0.408637518833961	0.566857680235685	0.867634455258659
Merged-chr13-37600381-4	chr13	37599878	37600878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-225660.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.12709398529284	7.09494411690159	6.97782591768064	7.23616373800806	7.21974059090354	6.89067856797116	0.0935090026922441	0.708711200537862	0.92375127577894
Merged-chr18-4352403-4	chr18	4351922	4352922	+	909.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	531.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.90784788117395	8.15493419698314	7.93963545818522	8.10189768212923	8.4533346140119	7.89951497238622	0.244547473716477	0.325974860373171	0.71841601332511
Merged-chr3-22076149-4	chr3	22075671	22076671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	-481.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.58032965483396	5.53474044948223	5.64472073345857	5.94843307657813	5.56392882089891	5.92932392683748	0.42575160742628	0.193784351815052	0.581038821874054
Merged-chr19-32953043-2	chr19	32952543	32953543	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	195466.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.58247249726146	4.65616023532567	4.97035014375793	4.73837503144067	4.36368554170605	5.09670573295053	0.0371084345588055	0.935914320438647	0.986006556497809
Merged-chr5-142931952-3	chr5	142931481	142932481	+	592.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25227.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.86145023168933	5.705376305766	6.18259812439336	6.25569496875205	6.4440920296087	6.43099500202197	0.784724189182593	0.00959243200488248	0.0977081649392966
Merged-chr8-117282326-4	chr8	117281837	117282837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25318.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.45860382319347	5.99211066096783	5.93162996410616	6.00149984179248	6.28697195433074	5.83859936221374	-0.153386557055102	0.646595864627269	0.90100465546023
Merged-chr7-19702138-2	chr7	19701638	19702638	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 8 of 8)	B1_Mur3|SINE|Alu	-2950.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	2.71431768524939	2.60136435269413	2.77377792034872	2.53578939167701	2.34964709066117	3.07191751456212	-0.0279573251814472	0.974085077450115	0.99422005073929
Merged-chr11-114929811-4	chr11	114929315	114930315	+	953.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	4571.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.75001386276808	6.67009670816155	7.12762303130711	6.43345917059669	6.48191957849027	6.72387116392366	-0.487926871751563	0.0843459909067767	0.384351654511012
Merged-chr12-81591626-4	chr12	81591111	81592111	+	946.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347384, intron 1 of 7)	intron (NM_001347384, intron 1 of 7)	3397.0	NM_001347385	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	3.39529661506922	3.33649606261165	3.63498951813576	3.31232261351727	3.38272075953949	3.44662320253626	-0.28308467391583	0.635871213139265	0.896829421389054
Merged-chr3-96148153-4	chr3	96147645	96148645	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025613, intron 7 of 12)	intron (NM_001025613, intron 7 of 12)	-13825.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	2.88159795964808	3.12471033439035	2.98344797661029	2.84934794092548	2.81287706143852	2.93610346824549	-0.672484354265651	0.335251083198603	0.725385451575238
Merged-chr18-64512379-2	chr18	64511879	64512879	+	729.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 2 of 14)	intron (NM_001142950, intron 2 of 14)	4178.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	5.10375843882657	5.21465461733743	5.4156796709325	4.915427183449	4.91227738132981	5.36588010772945	-0.363080664000764	0.347060203177821	0.735199858635661
Merged-chr18-9484669-4	chr18	9484169	9485169	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-34515.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.74673922755746	5.70544588565715	5.00398084163525	5.61266396552668	5.46390796169138	5.03154211804891	-0.264158713856417	0.526114584611343	0.849279136234443
Merged-chr14-20733673-4	chr14	20733172	20734172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 1 of 14)	intron (NM_010811, intron 1 of 14)	890.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	8.26661671946714	8.60732507813299	8.15160601905871	8.44185039961029	8.73115947935956	8.21317649337845	0.174540359938533	0.492418496649401	0.83104217378051
Merged-chr10-45067736-2	chr10	45067236	45068236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011156, intron 1 of 14)	intron (NM_011156, intron 1 of 14)	522.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	6.36347838115205	6.33689584252736	6.17074733076092	6.36105840072686	5.96936027587244	6.37107272767033	-0.102456868731864	0.730171097743849	0.930759951830614
Merged-chr3-159839638-4	chr3	159839097	159840097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026582)	promoter-TSS (NM_026582)	-53.0	NM_026582	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	5.46790718408834	5.62337970671053	5.32854118021588	5.28677280385361	5.17826370646552	5.32907737649563	-0.446433874292976	0.193735143401189	0.581033530782477
Merged-chr10-94354362-8	chr10	94353857	94354857	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MTEa|LTR|ERVL-MaLR	42408.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.48467477858818	5.09920230217686	4.71678038951934	4.90054803553245	5.15040273880136	5.0982185771833	-0.197831393644387	0.638417574795473	0.897558741004802
Merged-chr9-94672788-4	chr9	94672300	94673300	+	848.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	2908.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.020567017048	4.28280573726911	4.13597719794548	3.8717602874468	3.9532147099008	3.96463934807858	-0.656265979654896	0.184619982347193	0.568347311818612
Merged-chr17-34591581-4	chr17	34591040	34592040	+	832.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-931.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	5.58219647973541	5.42728640643556	6.02991828932236	5.76954644749121	5.67234312418759	6.11015941283626	0.293664108901603	0.409953236871937	0.78304118380362
Merged-chr2-163615461-1	chr2	163614961	163615961	+	544.0	f1_c57bl6.idr	exon (NM_181734, exon 5 of 5)	exon (NM_181734, exon 5 of 5)	8249.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	2.94406484480648	3.06212200357777	3.01739600279371	3.05471265200039	2.6616054705111	3.08994217320599	-0.294765234739149	0.686010741844834	0.916590368800581
Merged-chr12-16893158-2	chr12	16892671	16893671	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON29|DNA|PiggyBac?	-1807.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.02340680316644	6.05406500835147	6.09668556667901	5.69742614434079	5.84064042724552	5.75603698244493	-0.504240718252239	0.0892005047121151	0.396745242099106
Merged-chr7-29492080-4	chr7	29491577	29492577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	L1MC4|LINE|L1	13383.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	4.83293940229454	5.07658822786246	5.25753876376004	5.58120957793242	5.54860203234825	5.85095201331055	1.18848633835944	0.001013968884466	0.0182146638468582
Merged-chr8-31168809-4	chr8	31168297	31169297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026453)	promoter-TSS (NM_026453)	-73.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	6.18335769621253	6.69707543290509	6.56183229601889	7.06155873066978	7.16911404616396	7.29834334732899	1.04993824103386	0.000177897934854245	0.00454997158459268
Merged-chr8-125596392-4	chr8	125595894	125596894	+	873.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	11756.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	4.35239641733127	4.17168201698965	4.31208848927747	3.75349570606242	3.72269756470464	3.96990847396542	-1.41472636905953	0.00510405269839934	0.0620449988208053
Merged-chr5-140506305-2	chr5	140505805	140506805	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	696.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	5.02758554679913	4.9609002542453	4.68345372926002	4.92358997901661	4.52999233554119	4.70936810595417	-0.408775072992486	0.32575426917183	0.718251132260576
Merged-chr4-149326020-4	chr4	149325520	149326520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8619.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	3.64302758578753	3.39138895516056	3.40781744955473	3.34067881549497	2.99075953641933	4.00990154409235	0.142032097783742	0.845568508940063	0.963834884892227
Merged-chr10-59952507-3	chr10	59951985	59952985	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-715.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	5.35823913789586	5.57922907741285	5.52150881646176	5.21322154516344	5.03274272864668	5.41421244478039	-0.541141250230205	0.126386744659468	0.475300963888672
Merged-chr4-132780467-4	chr4	132779969	132780969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12109.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	5.34208588074446	5.0546919238623	5.24200479683257	5.20638947687216	5.01861893482286	5.39557374826792	-0.0263653751405997	0.943148011745503	0.987335800407922
Merged-chr17-83706626-8	chr17	83706058	83707058	+	930.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	intron (NM_054082, intron 1 of 16)	395.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	8.15041820916492	8.1669887640207	8.24759893159047	8.22230732879215	8.18076676348642	8.4146438350209	0.119870132638881	0.568416775481277	0.868549528189122
Merged-chr3-98015198-2	chr3	98014698	98015698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	1660.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.76529247165968	4.7003330231428	4.89364866745401	4.78201329712782	4.58240850802027	4.61557698981459	-0.283387309652109	0.483384952091125	0.826174950723369
Merged-chr15-81026976-2	chr15	81026476	81027476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	49211.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	2.47428205785407	2.23490450403989	2.51147252777532	2.11520268448503	2.06124609756325	2.39908929501028	-1.52362372464595	0.105642078217944	1
Merged-chr18-36715945-4	chr18	36715436	36716436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	10879.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	6.36828115234417	6.12928366878707	5.97888425370031	5.6440594752396	5.32800187945694	5.56977766624181	-1.18805771167825	0.00023759323717085	0.00575368395765777
Merged-chr1-171466226-4	chr1	171465750	171466750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR73|LTR|ERV1	28689.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	5.18387993112879	5.01617889529113	5.1868668886951	5.47660253690536	5.31351683243703	5.5485897418235	0.630860501152422	0.0714537152286562	0.350644063266456
Merged-chr1-169368963-4	chr1	169368455	169369455	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	162509.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	4.11562956577923	3.68722090738769	3.60376843264625	3.47771025298458	3.53740756391671	3.44332314155835	-1.16668866857659	0.0496650069108407	0.283566429626711
Merged-chr13-81335094-2	chr13	81334594	81335594	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	298050.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	2.63816763312711	2.66273352108105	2.46750989292055	2.84034650383445	2.76417532814471	2.86706006876842	1.22163729501453	0.116328039831297	1
Merged-chr13-54468282-1	chr13	54467782	54468782	+	546.0	f1_c57bl6.idr	intron (NM_028597, intron 1 of 5)	intron (NM_028597, intron 1 of 5)	558.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	5.10387792510623	5.29244590976249	5.18189002751502	5.25196704021209	5.47983075656978	4.99525849938685	0.154651812194185	0.678245637443531	0.913379457468915
Merged-chr8-121579810-2	chr8	121579310	121580310	+	758.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	4.44138492559853	4.59625037265187	4.55891475768372	4.26192894652717	4.43326272888127	4.58504940688181	-0.263892536577166	0.545338640388482	0.858059274547204
Merged-chr2-163765129-3	chr2	163764647	163765647	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14908.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.98179833907472	7.15799607299356	6.87673296327962	4.79815329874903	4.56095129523209	4.78662886783826	-4.51171185252798	2.64906249822855e-32	2.44914658169557e-28
Merged-chr1-88699605-4	chr1	88699109	88700109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2582.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	7.25993086784901	7.23778721289643	7.00633857200912	7.15196136895408	7.57780346019215	7.00810485484519	0.154876344471532	0.572123824190379	0.869795143026488
Merged-chr13-60649029-1	chr13	60648529	60649529	+	541.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	46818.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.4160855049448	4.30729078431377	4.68599268765601	4.09774514712052	4.08798907218063	4.40653061756358	-0.730207273891525	0.122626271252161	0.468501160675414
Merged-chr2-164359896-4	chr2	164359409	164360409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	5.04904303424107	5.05616919142427	4.60718352113741	4.99755812865332	4.71957270254345	4.49072485535829	-0.38310490042674	0.379653845621895	0.76201161008233
Merged-chr10-10556040-4	chr10	10555554	10556554	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2153.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	7.1395507289911	7.57093617267486	7.19922393995969	7.54340617781172	7.60137613658075	7.45021406472388	0.31094014489041	0.21600440134671	0.609408816575358
Merged-chr11-117825871-4	chr11	117825309	117826309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027827)	promoter-TSS (NM_027827)	-110.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	6.4655396913783	6.31643187831689	6.50706338344255	6.85161654221776	7.03560183877526	6.68638174323506	0.707934836612307	0.00802900729825369	0.0863037901140799
Merged-chr17-36865755-3	chr17	36865263	36866263	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177872, intron 2 of 6)	MTD|LTR|ERVL-MaLR	1424.0	NM_001024134	69097.0	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	3.18677357977754	3.25148258394633	3.2827472002088	3.02146841937436	2.75165786005128	3.06969180922526	-1.35810820495395	0.0518977483255427	0.290880317498039
Merged-chr2-150609391-4	chr2	150608903	150609903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-836.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	4.46345181701891	4.45282817812016	4.5664961463778	4.40521205824306	4.80116404290802	4.63281102987042	0.339764432649961	0.431525347101971	0.796911573849146
Merged-chr7-126117971-2	chr7	126117471	126118471	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 14 of 23)	intron (NM_028816, intron 14 of 23)	-35560.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	4.69754653334858	4.70329444127558	4.71623125183686	4.76025676777007	4.71260239465579	4.78199983064157	0.102656333532647	0.794601134596633	0.950805825047068
Merged-chr8-83081847-4	chr8	83081292	83082292	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	MTE2a|LTR|ERVL-MaLR	-83560.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.87995019176286	6.35286527586803	6.4299131108553	5.98855898096631	5.96248281789848	6.36612693511605	-0.217050617835105	0.5074824619959	0.839144704949323
Merged-chr13-5859900-5	chr13	5859409	5860409	+	918.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.22284683465493	4.03105602039443	4.19373331903425	4.28150838636855	4.31846144236902	4.47651651171045	0.562707307620355	0.222297649835042	0.617225566059783
Merged-chr7-100443907-4	chr7	100443343	100444343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 27 of 32)	intron (NM_001017985, intron 27 of 32)	-29148.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.50706187231657	6.50951073181355	6.39017637269307	6.26150618586408	6.49814333015989	6.52234139457463	-0.0683363412267055	0.801003773865663	0.95274755793001
Merged-chr5-143817209-4	chr5	143816698	143817698	+	657.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-54664.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	3.83639398177666	3.9162877413787	4.17335594202797	4.0410235889369	4.19616209427584	4.00898087527607	0.343684373573793	0.492853843239407	0.831208279358962
Merged-chr10-51456638-4	chr10	51456137	51457137	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23975.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.75640605597638	7.01388584970924	7.06386049925014	6.98237827134162	7.36964539355349	7.0436318519081	0.309142907877418	0.244850584816445	0.642292795126316
Merged-chr3-95648118-2	chr3	95647618	95648618	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-10603.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	3.65107790908161	3.84794891823712	3.9574760033935	3.66140947469507	3.7750365887424	3.83437084216069	-0.2016804358556	0.706167266074785	0.922878730238431
Merged-chr1-84286924-3	chr1	84286420	84287420	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2275.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	2.61601313120056	2.50793133517335	2.7993587687621	2.74656313346684	2.40168717992265	2.75298953803915	-0.0117250806446541	0.98832931522487	0.99736007315315
Merged-chr1-191192758-2	chr1	191192258	191193258	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	3.00230547569893	3.04928178524398	3.15150456482492	3.14182056500297	3.09012160124782	3.38608453227365	0.606110732458709	0.352815965246912	0.740329823404675
Merged-chr11-121741098-4	chr11	121740597	121741597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38670.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.33018554092404	7.56109939038987	7.14657881288735	6.9652135924748	7.09833677610272	6.88676160309324	-0.558516153868861	0.028380858141533	0.201700926224862
Merged-chr4-130839920-2	chr4	130839420	130840420	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47383.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.15196772978923	3.24895360506031	3.68178052734157	3.17548165677411	3.22803141551419	3.29339452055207	-0.560360711128808	0.389863732349593	0.769390875251541
Merged-chr7-16925010-2	chr7	16924510	16925510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-978.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	6.55737239457645	6.66794537832013	6.15086828914481	6.48756463226197	6.68032950273176	6.2787151345426	0.021476092445252	0.943377078032595	0.987377570608805
Merged-chr17-69397357-4	chr17	69396859	69397859	+	918.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13555.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	5.19083192213795	5.38465532607801	5.12698706818792	5.00719807652572	5.24188693452536	5.12264569058577	-0.230745363500095	0.525704142401056	0.849127238910141
Merged-chr6-82772142-4	chr6	82771643	82772643	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	2311.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.70787073322695	5.98780823254961	5.81194054996727	6.58354086736737	6.56229466641529	6.34982975079898	1.11601244447549	0.0001330594780447	0.00360873958577033
Merged-chr6-124916060-4	chr6	124915554	124916554	+	864.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-809.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	4.61530480513739	4.00721065132407	3.96448922615181	4.35115381199584	3.97594928983054	3.92786428502938	-0.379156251926793	0.492721801986491	0.831208279358962
Merged-chr3-90266503-4	chr3	90265993	90266993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	-21.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	9.03068249273595	9.1980824406307	8.60651219522737	8.9798717842427	9.31966677149103	8.76706281270704	0.100972938901084	0.698827462873679	0.920452394037037
Merged-chr11-34783844-4	chr11	34783326	34784326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033374)	promoter-TSS (NM_033374)	79.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	6.53667469019534	7.11449628417466	6.77075169687165	7.03604277089126	7.14472188369845	6.73314781075172	0.23899847456816	0.415041153550272	0.786131215675189
Merged-chr16-4628527-2	chr16	4628027	4629027	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 25 of 27)	intron (NM_030205, intron 25 of 27)	-3581.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	3.25982386467421	3.63834691824575	4.00004632354711	3.44421403923828	3.52952139333048	3.7505930183086	-0.287704755728445	0.649765063456221	0.9023273707411
Merged-chr2-163745781-2	chr2	163745281	163746281	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	MIR|SINE|MIR	4458.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.16609839645758	3.68286896467667	3.96967399453447	3.87407375731926	3.86808592476469	4.0383927604023	-0.0934725437524501	0.86064479495148	0.967588655430938
Merged-chr18-58556967-1	chr18	58556467	58557467	+	554.0	f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	727.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	3.24775720641349	3.70505780607804	3.60615545962348	3.24057238441286	3.31173523865308	3.17174325041647	-1.11317319789112	0.0840333089574535	0.383661081936741
Merged-chr9-41052241-2	chr9	41051732	41052732	+	584.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	B1_Mur1|SINE|Alu	27274.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.33662907119855	3.18745913608236	3.64471026042599	3.61219115630373	3.80055040266748	3.76442304636311	1.21596650182868	0.0435920848968516	0.262366077221601
Merged-chr11-107472888-2	chr11	107472388	107473388	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.66215805916389	4.44491715765344	4.18565479887108	4.59774773916223	4.80365968894429	4.54096421464078	0.492711330758903	0.277094548991466	0.674343034039447
Merged-chr11-32587655-2	chr11	32587155	32588155	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 5 of 18)	intron (NM_009288, intron 5 of 18)	54389.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.0545138934467	2.75914588526106	3.3107838385769	2.80279247225176	2.58085533024528	2.75679550547704	-1.74393506149046	0.0264232406899971	0.193082024355254
Merged-chr4-140987726-4	chr4	140987232	140988232	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	859.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	7.66636064418435	7.88384101815749	7.92815501626407	8.02171985290508	8.24319933299277	7.76187367942764	0.289392492189261	0.233338625088184	0.629682827928185
Merged-chr2-84635806-4	chr2	84635307	84636307	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	13673.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.58696774347899	5.36825715385331	5.31995714802882	5.36042043944476	5.22803915839768	5.25412123281745	-0.305088235168387	0.376016540044441	0.758951282467405
Merged-chr10-84341641-3	chr10	84341135	84342135	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98836.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.14318544661672	4.34247801479219	4.30593435383789	4.19073219644959	4.15140420358601	3.82772976647184	-0.529822685520667	0.285668460224359	0.683152802436807
Merged-chr6-115666847-4	chr6	115666347	115667347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	9041.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	7.85548638665365	7.91113691595178	7.46927275346101	7.63361527551938	7.867157552318	7.49419625247972	-0.12393574342811	0.624813228471842	0.892226791537215
Merged-chr18-33794319-1	chr18	33793819	33794819	+	625.0	f1_c57bl6.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-573.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	2.94018431690089	2.62192412759405	2.91214021260133	2.81403840495319	2.69346568695216	2.67538558886838	-0.52421037910846	0.485175269662873	0.827363359345484
Merged-chr8-90824483-3	chr8	90823999	90824999	+	781.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4336.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.23085820747801	2.94893678868213	3.23380785913118	3.31861072020495	3.58156380685658	3.57834093247501	1.44462265444756	0.0262116553084032	0.19225079707782
Merged-chr15-34530218-4	chr15	34529710	34530710	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026340, exon 16 of 16)	exon (NM_026340, exon 16 of 16)	34899.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	5.71437591547913	5.86696953216824	5.39345823978281	4.73290412640165	4.94652067464745	4.93586218453178	-1.62904778869149	1.33371250202609e-05	0.000513537944787537
Merged-chr3-89250665-2	chr3	89250165	89251165	+	790.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025327)	TTS (NM_025327)	4192.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	1.85981728809111	1.8753052162564	1.87495148171764	2.07727310334319	1.8781395483279	2.1551177221296	1.39290382680046	0.154357127041393	1
Merged-chr1-171272188-4	chr1	171271611	171272611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 3 of 7)	intron (NM_020579, intron 3 of 7)	1783.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	6.48312220673551	6.40769250983266	6.31997833710853	6.26558069598699	6.40581819602835	6.07891327622338	-0.231033288753854	0.412217097299196	0.784353080998662
Merged-chr6-42380843-2	chr6	42380343	42381343	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045169)	TTS (NR_045169)	-7575.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	4.01267839192106	4.02220984111546	3.93635092264239	3.90000633204888	3.96370508852955	4.3206956591083	0.20943782240299	0.679130348700322	0.913602865740649
Merged-chr2-28468032-4	chr2	28467523	28468523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166031)	promoter-TSS (NM_001166031)	-43.0	NM_080452	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	5.10871763607614	4.91697320876184	4.96711107788238	4.83951970161673	4.83297145875772	5.09936131680132	-0.178824231317085	0.640540597211997	0.898483031109382
Merged-chr4-41124406-4	chr4	41123897	41124897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139236)	promoter-TSS (NM_139236)	-58.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	6.1898979384241	6.44410728637247	6.44207141016417	6.48641924070757	6.31936323751676	6.25077023091712	-0.00435960895198712	0.987611794725885	0.997223245230291
Merged-chr5-145117605-2	chr5	145117105	145118105	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	3349.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	4.67426518890333	4.84455184527071	5.25487573088002	4.78230041004972	4.55943486378074	5.34449690317382	-0.0237300105945397	0.959302353996243	0.990174309444982
Merged-chr18-75695375-4	chr18	75694847	75695847	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2349.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	3.94140127398927	4.13123719673078	3.72541285377038	3.97294063231188	3.71493521892774	3.7973410541266	-0.374129961209206	0.486063407895863	0.827641640456729
Merged-chr11-85002125-2	chr11	85001625	85002625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	44371.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	2.83470458895034	2.52813895047465	2.7165395828455	2.59191103866895	2.61845946884101	2.39494880895716	-0.883186060536983	0.28521669726804	1
Merged-chr2-153544802-2	chr2	153544302	153545302	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14831.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	6.28265665197162	6.29801864687032	6.52236581509017	6.3588281377035	6.36224487902112	6.24628188205214	-0.0597434466032308	0.828248160402141	0.959644980564395
Merged-chr15-31454946-3	chr15	31454445	31455445	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172606)	TTS (NM_172606)	-1256.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.7162125902444	3.97136486297508	3.95297381213143	4.07159861903202	3.95235032963707	4.20530466847634	0.571045066650426	0.26206290793422	0.65993978704045
Merged-chr18-32395809-4	chr18	32395314	32396314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-17530.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.85392926113673	3.81107327175813	4.07712173546041	4.06645476585204	3.93877472471982	4.35702854612135	0.624318812178309	0.223749318603838	0.618510481017847
Merged-chr4-149407631-4	chr4	149407126	149408126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	19005.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	4.99184952524963	5.0691601320967	5.16518744493566	4.78654942809066	4.7345507646288	5.03362126950505	-0.494716496349339	0.196400770089213	0.584231205404807
Merged-chr17-57031856-7	chr17	57031325	57032325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010613)	promoter-TSS (NM_010613)	-318.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	6.41160110867347	6.10982976643238	6.12788864768815	6.19403152735216	6.10621824583867	6.33093926263907	-0.037429977119219	0.897839820441436	0.976179002491449
Merged-chr2-113475522-1	chr2	113475022	113476022	+	617.0	f0_balb.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	34458.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.59454729263979	3.59543677463576	3.39221591537188	3.54180893918201	3.49200728950187	3.4642876202475	-0.132803456262999	0.817616475600961	0.956767881392089
Merged-chr5-146791543-2	chr5	146791043	146792043	+	797.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	3413.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.06378849713774	6.24801269978855	6.05656359053661	6.23710273834747	6.13727799951061	5.87462462051511	-0.0503961322328169	0.86562721317478	0.968641478520565
Merged-chr4-149875564-4	chr4	149875148	149876148	+	818.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79358.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	4.30855480883579	4.31139208131601	4.38778479004394	4.66272260496644	4.41553811139284	4.77145474531951	0.709039905822158	0.106643370071975	0.435916169724877
Merged-chr12-112976527-4	chr12	112976024	112977024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145900)	promoter-TSS (NM_001145900)	-39.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	4.68547892680001	4.58937797230215	4.79061106549406	4.5578637036917	4.40898689438215	4.62832155466908	-0.384687579526685	0.357160982337558	0.743779426322518
Merged-chr14-13961746-5	chr14	13961245	13962245	+	977.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025435)	promoter-TSS (NM_025435)	107.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	5.3686467176303	5.40349895905149	5.43721611548632	5.7397805013093	5.41578533369668	5.06023780970496	0.0824771504362081	0.823585295531724	0.958451715155168
Merged-chr19-29494589-4	chr19	29494111	29495111	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	27376.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.00381646722177	5.21380668696877	5.44862777312729	5.28722887985491	5.81856910741859	5.45367636075456	0.633413308569011	0.0933486723215141	0.407008820295984
Merged-chr15-96700681-2	chr15	96700181	96701181	+	884.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-953.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.63944402926996	4.63064171428652	4.08397728367018	4.36504224999259	4.39594891092391	4.20807353055211	-0.401474228563689	0.40682887482731	0.781097742451355
Merged-chr3-116436326-3	chr3	116435831	116436831	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12299.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	3.94522555845124	4.04169124553449	4.17635400537017	4.30943029984398	4.11736243655848	4.3737722411953	0.59838195503296	0.21081769262787	0.603098348627511
Merged-chr9-55311754-4	chr9	55311264	55312264	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15149.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	3.16243423708283	2.80342022463423	2.98022156241407	2.79852477266291	2.88634406861981	2.93273731241506	-0.568434965282252	0.425113989226264	0.792953996178775
Merged-chr11-79120830-2	chr11	79120330	79121330	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	25643.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.39191827650721	4.10283232982287	3.79565624061485	4.35058738236093	3.73286264151943	3.97872641162442	-0.219314171889846	0.700140424930676	0.920889072075365
Merged-chr7-4777020-4	chr7	4776529	4777529	+	890.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290423, intron 1 of 4)	CpG	1112.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	2.13904298376663	1.90398313893891	2.36008742177111	2.23760284564191	2.0711418146889	2.43498274948778	0.737526083024049	0.457106064662439	1
Merged-chr10-34201493-1	chr10	34200993	34201993	+	560.5	f0_balb.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	6058.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.51353709753172	5.48605701373599	5.49851227380741	6.12359392270098	5.87917034230814	5.67808224922827	0.754290935189061	0.0198057784046094	0.160342872396482
Merged-chr10-18194875-4	chr10	18194368	18195368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	16022.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.66357501414291	4.33387255086999	4.34710113852198	4.24636196052322	4.21028684416298	4.2786561906463	-0.577357788163884	0.206712862044546	0.597313895543352
Merged-chr14-76097425-4	chr14	76096934	76097934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026177, intron 6 of 7)	intron (NM_026177, intron 6 of 7)	13381.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	5.06858096380113	5.33989222925233	5.26880819827351	5.32263119484689	5.28629772998063	5.61576032759949	0.349622767254486	0.328657404634495	0.720880314701793
Merged-chr7-26253563-4	chr7	26253076	26254076	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13255.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	4.43258486960489	4.45600434781349	4.42474564846497	4.47063135817431	4.31150001182192	4.69092356093931	0.125735863446637	0.775241761130237	0.944594834759211
Merged-chr14-55743911-4	chr14	55743420	55744420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026819, intron 2 of 8)	intron (NM_026819, intron 2 of 8)	1764.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	5.82268046025025	5.83386986693409	5.99285168350385	6.04970807254843	6.12068105819154	5.96124945199562	0.301667214258345	0.305049065439655	0.701313794825734
Merged-chr15-78449745-2	chr15	78449245	78450245	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18889.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	4.61940411748963	4.19197016809153	3.81861687603577	4.22926962532547	4.01509006975068	4.15914330965611	-0.340833817920134	0.529938053912922	0.851070276054813
Merged-chr17-27042477-1	chr17	27041977	27042977	+	584.0	f1_balb.idr	Intergenic	Intergenic	13218.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	4.18364463172973	3.95355365673821	4.32957354169576	4.48115802477033	4.63002502740492	4.75251309959566	1.21913611383715	0.00804451127536861	0.0864034715632982
Merged-chr6-8655670-1	chr6	8655170	8656170	+	592.0	f0_balb.idr	intron (NM_010492, intron 10 of 13)	intron (NM_010492, intron 10 of 13)	102788.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	2.94571365130145	2.83312283615373	3.1013332690589	2.79685509355134	2.68808444184795	3.22602561608312	-0.199698286938486	0.789047746295106	0.949092571737679
Merged-chr7-80154920-4	chr7	80154390	80155390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-31951.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.29347547008276	4.53668403690412	4.35861824209773	3.92289661651466	4.34500381500342	4.33888849088148	-0.487215685631846	0.314300563261454	0.708700303644741
Merged-chr17-78903379-4	chr17	78902906	78903906	+	859.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163625, intron 2 of 6)	intron (NM_001163625, intron 2 of 6)	3586.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	3.074759726838	3.48309569939281	3.67340108240787	3.29647911205586	3.09368443517677	3.0932309633407	-1.06080548532617	0.119675302812217	0.46240736458783
Merged-chr11-117827539-2	chr11	117827039	117828039	+	950.944458	f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 1 of 10)	B1_Mur2|SINE|Alu	-1525.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	7.70505967914622	7.50896884397559	7.59445712311047	8.13409753265482	8.38186426151965	8.06567894430767	0.857119911786966	0.000160346567044002	0.00419036342669513
Merged-chr13-60691803-1	chr13	60691303	60692303	+	618.666687	f0_balb.idr	intron (NM_134062, intron 2 of 26)	ORR1D2|LTR|ERVL-MaLR	89592.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.87390063155428	3.85950452655568	4.17669159788248	3.29937527492689	3.47535529173254	3.74581956668022	-1.56382719438559	0.00835348725473619	0.0887256787710095
Merged-chr11-8661952-2	chr11	8661452	8662452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	2583.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.31587644135916	4.57019951084479	4.43719398983242	3.99847229923226	4.03173305069994	4.04867723776564	-1.16466760361783	0.0134041414163478	0.123200242899754
Merged-chr17-78372811-4	chr17	78372310	78373310	+	778.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	45342.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.05220893009706	5.00560365705941	5.3301253603991	4.9136230076587	4.99178899949486	5.0130358408119	-0.326428160850826	0.384117533668782	0.765293063085998
Merged-chr10-42226439-2	chr10	42225939	42226939	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	50303.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	2.85345289422284	2.83635427204488	2.79725973902406	2.91908731359108	2.72621899034878	2.99122951452888	0.236164153857064	0.73970497587	0.934245371298156
Merged-chr11-100352321-2	chr11	100351822	100352822	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 6 of 12)	intron (NM_001359052, intron 6 of 12)	3806.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	3.17825336066612	3.095195535354	3.07994054846988	3.13006561386276	2.98039436603253	3.26656486346875	0.0170325114885943	0.9792277781748	0.995177657748265
Merged-chr2-60852057-4	chr2	60851586	60852586	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	29352.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.17186555093241	6.86154397392985	6.91162517126717	7.22726002007438	7.24400895023229	6.96993572837193	0.253221587863655	0.323276584162191	0.716623988037286
Merged-chr17-33686358-2	chr17	33685858	33686858	+	625.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-900.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	4.1664623490466	3.81504626990869	4.27825702412232	3.99388552185422	4.12267140731387	3.97936757394042	-0.163227891466129	0.749780278594936	0.93745630986217
Merged-chr1-128723898-3	chr1	128723392	128724392	+	761.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-131593.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.688776602008	6.5194647202717	6.44077815801501	5.9696172352396	6.09975524077329	6.141750115246	-0.807410460535161	0.00377241184772836	0.0498087662687688
Merged-chr8-70753312-4	chr8	70752803	70753803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1376.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	7.92164301945189	8.1524332481833	8.00716720232852	7.78060899107111	8.20113993658413	7.83649479986289	-0.100843804823399	0.674580601127658	0.911852710156386
Merged-chr1-36914060-3	chr1	36913560	36914560	+	686.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	25467.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.89791779173998	4.85797231429787	5.05294415385324	4.79116474968684	4.47496726602243	5.17866135633575	-0.226204481716827	0.600731211597831	0.881845397290763
Merged-chr10-42759918-4	chr10	42759417	42760417	+	942.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	4.02793702356205	4.06389660207201	3.78669802257258	4.22882470600292	4.34123724214426	4.30732596632595	0.901503575561328	0.066079952631346	0.335492140981697
Merged-chr5-64344487-4	chr5	64343993	64344993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114136.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.79065286694454	6.82034031768741	6.5866446729919	6.7213968610317	6.7815030630897	6.55725851092584	-0.0728444016889093	0.77975770166182	0.945903255857057
Merged-chr15-99154782-3	chr15	99154272	99155272	+	684.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139140, intron 2 of 12)	RLTR45|LTR|ERVK	27927.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	3.57349188803442	3.40366039804166	3.50603781666477	3.65264551262117	3.22793625715436	3.73162953943763	0.191723160856618	0.754627876645457	0.939008487312488
Merged-chr7-101549426-4	chr7	101548938	101549938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	6364.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.44150342001975	6.95960751263375	7.12650768682915	7.90421057072613	8.07690812008071	7.53175742011764	0.975742187722213	0.000375494094425909	0.00837194871623554
Merged-chr2-5771690-2	chr2	5771190	5772190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-56928.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	6.16295184931659	6.09431950984947	6.20202797943077	6.27999406488191	6.20161604925345	6.48634323106874	0.281402483511232	0.318700300834817	0.712681234958205
Merged-chr9-56101240-4	chr9	56100719	56101719	+	870.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	11243.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.51288328795699	4.61579949615635	4.44861714494233	4.45286579241417	4.24375214984647	4.33831802248422	-0.479821360389422	0.273001905760227	0.670225196190864
Merged-chr8-31111717-4	chr8	31111250	31112250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175136)	promoter-TSS (NM_175136)	-96.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	5.89803433885261	5.82298175499732	5.94668569332977	6.0001940593711	5.87249993430893	5.93747428572539	0.0864721496185122	0.769730757514873	0.943207535850597
Merged-chr9-89267285-4	chr9	89266757	89267757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55873.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.68120573909943	7.62609526941961	7.55401365443729	7.26367531418718	7.70698879787168	6.89746017756945	-0.401317092158537	0.164326367802168	0.538737764678313
Merged-chr18-32376435-4	chr18	32375992	32376992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-725.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	6.23990118160689	6.39701464199712	6.45990584954062	6.74491249707992	7.00978047480243	6.85794994430739	0.818934892266024	0.00200034364284929	0.030995268870429
Merged-chr1-107502259-4	chr1	107501772	107502772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9151.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	4.57608965611211	5.00174570790824	4.62944791500872	4.82767841165158	4.57908756179584	4.69654804253127	-0.130453996874223	0.759823638054876	0.940572672765463
Merged-chr15-64047219-3	chr15	64046727	64047727	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	12537.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.20495564680775	6.44605299207828	6.32972781098575	6.46954337418757	6.36914492935005	6.55227459450465	0.209250072639388	0.445528769523454	0.805194667777499
Merged-chr19-5490428-4	chr19	5489930	5490930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-25.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	6.78264840789041	6.49880204984545	6.82969537449643	6.75140753966038	7.10352022731735	7.11336225455032	0.454662136378681	0.0951804591140658	0.411148363215922
Merged-chr11-68855161-2	chr11	68854661	68855661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2030.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	2.89576819207917	2.63300606407264	2.86744277866429	2.68846730192605	2.78206209960187	2.88042458507108	-0.0936873290567982	0.898494881983539	0.976357805207492
Merged-chr18-60908254-4	chr18	60907771	60908771	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3969.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	2.35249166692086	2.20278990563419	2.45411289179526	2.55168024733921	2.31378845934869	2.83072860715433	1.47282078546667	0.0928864459350913	1
Merged-chr7-79935183-3	chr7	79934681	79935681	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	83.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	6.56705120033588	6.63948976108887	5.94603099869783	5.56151162556897	5.67868926993145	5.68598507596502	-1.36062092083359	4.35251158499532e-05	0.00140919760297389
Merged-chr18-38233538-4	chr18	38233036	38234036	+	926.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16662.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.90672721219905	4.92299955371894	5.00875517915402	5.26850016330003	5.07193313916219	5.38930508197579	0.623699234304769	0.0909937352517287	0.401474453726382
Merged-chr7-105626843-4	chr7	105626300	105627300	+	827.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	6771.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	3.10297047525164	2.90030682956991	3.14626612786698	2.90028507288005	3.03305841640111	3.27176458742639	0.094804753101551	0.889848006352399	0.974313026039223
Merged-chr12-102417880-4	chr12	102417368	102418368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	21945.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.68641723558075	6.81857731861308	6.57246516933925	6.35516552951425	6.77479975014705	6.32912649008037	-0.291681242887199	0.312865108113529	0.707531331730172
Merged-chr5-118376152-2	chr5	118375652	118376652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130925.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	3.28054043579298	3.03090440313664	3.10231707858792	3.3061894903892	3.00071538725724	3.17534963465746	0.0858986488267769	0.896846755727641	0.97587199430405
Merged-chr4-142078205-4	chr4	142077702	142078702	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6096.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	6.94580072064035	7.1928655716261	6.87591343433071	7.5474415036404	7.45598638335539	6.99383817631823	0.515967633775608	0.0595548113683647	0.315867112802383
Merged-chr13-32339365-2	chr13	32338865	32339865	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-821.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	6.05489887403032	6.51809668337416	6.30680984212314	6.44456469240805	6.73717440734799	6.26452210447205	0.323212923977664	0.294754968581221	0.691671266130071
Merged-chr12-108641573-2	chr12	108641073	108642073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5820.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.69067363857401	7.69912880092941	7.20905375387757	7.61423193576805	7.74874506497928	7.56893163342361	0.125588237005774	0.619194951847285	0.889690442985822
Merged-chr1-171055354-2	chr1	171054854	171055854	+	727.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	4040.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	4.2327720251133	4.39135185295497	4.49915093792498	4.70926052282561	4.45156377159655	4.79531360623735	0.69179610857126	0.116510234179534	0.455679603553968
Merged-chr3-75293467-4	chr3	75292975	75293975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23397.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	5.06428119759583	4.79036523839518	4.9648037145043	4.96085492361352	4.83024887286349	5.13035251111805	0.056858974100046	0.883475836683242	0.973362870329156
Merged-chr9-21320270-2	chr9	21319770	21320770	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	-449.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	5.11020761338316	5.06072245199753	5.0854509792769	5.36529442371661	5.12217321814632	4.89001810801145	0.129878950924023	0.72982206485831	0.930635866770147
Merged-chr2-29060254-4	chr2	29059766	29060766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009442)	promoter-TSS (NM_009442)	3.0	NM_009442	22130.0	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	6.23320875124397	6.09376189904646	6.1970454636626	5.92669848386612	5.88711244161109	6.19651071995946	-0.300188095565196	0.307354031551971	0.703480064294889
Merged-chr14-54231380-2	chr14	54230921	54231921	+	837.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	22508.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	2.84208272099528	2.9592151735732	2.71951294531525	2.90749887959696	2.62863091561413	2.97924188083082	-0.0235000523699024	0.974897323127725	0.994382735882691
Merged-chr17-70738384-4	chr17	70737891	70738891	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	108386.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.26306793134498	3.22834322012256	3.22857870007581	3.24114348111272	3.08754544363735	2.93143659570518	-0.61656777600041	0.351227613166367	0.739086949987195
Merged-chr2-50687943-4	chr2	50687426	50688426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221758.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.71486653050983	5.73873485464764	6.03463225058117	5.83434840608137	5.59720096055868	5.48843239620192	-0.31954284320611	0.331386175252274	0.722673159460747
Merged-chr9-85399273-2	chr9	85398773	85399773	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72123.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.27133508240512	2.40202638843652	2.15100123399702	2.36742147840019	2.26651655991166	2.61823244616238	0.896533612024905	0.316769249097923	1
Merged-chr15-99416720-4	chr15	99416229	99417229	+	920.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23510.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.05409415772915	3.00757132055241	3.28204258138679	3.38665262523053	3.10749668708017	3.12365343504928	0.421857960275614	0.521751714995652	0.847186270857377
Merged-chr2-24975151-4	chr2	24974638	24975638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-40.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	8.12824423047321	8.1312622020384	8.05036270116386	8.0032535873059	8.29639858796716	7.58208784488838	-0.141068646462098	0.587903486062501	0.876157251972291
Merged-chr19-11352103-2	chr19	11351603	11352603	+	680.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15957.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	2.626202984574	2.48928765488635	2.55473481063922	2.59924257280465	2.44620441508369	2.69101351814766	0.113604062840215	0.884129561504399	1
Merged-chr12-80047658-2	chr12	80047158	80048158	+	834.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	65355.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.35827459315873	5.32151881309759	4.71726161538857	4.73014724941249	4.69720677140946	4.35649034151197	-1.23511787062843	0.00599741013595268	0.0697654833765344
Merged-chr3-96292760-2	chr3	96292250	96293250	+	588.5	f0_balb.idr|f1_balb.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	1219.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	6.11131876174596	6.43845854290435	6.5118666350761	6.58722553793576	6.68905601804491	6.5538609943544	0.41314216352868	0.139452747413824	0.499084106249493
Merged-chr9-116145399-4	chr9	116144896	116145896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	29967.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.76238157494848	6.60356104107251	6.60771748680743	5.85435342406564	5.86771514155111	5.76508538111555	-1.38344109543953	9.00896629069177e-07	4.95124218702695e-05
Merged-chr11-94550730-2	chr11	94550230	94551230	+	673.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER70A|LTR|ERVL	-1523.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	2.89853835497643	2.72190428674476	3.12502918078783	2.49309028782328	2.70023470206826	3.03338307228742	-0.813320647123297	0.320744274086636	0.714532129212091
Merged-chr2-25607974-4	chr2	25607465	25608465	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029859)	TTS (NM_029859)	481.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	7.99112366300257	8.38705668720555	8.08797805103156	8.0759315809421	8.13874641829484	7.84318285581974	-0.196798702565783	0.40643336064734	0.780676741566939
Merged-chr9-47671257-3	chr9	47670731	47671731	+	829.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	140879.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.98908399322145	4.97437936991421	4.74027398020632	4.05058233292645	3.98751589282502	4.39257530341654	-1.99033729042919	1.43678665085509e-05	0.000548152882367494
Merged-chr1-154094959-2	chr1	154094459	154095459	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-106228.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.05072634843477	6.03751913857672	6.31026579903386	5.58998780165997	5.38567615545276	5.94962249615979	-0.86383673998151	0.00964230771421465	0.0980219370072367
Merged-chr11-114982086-3	chr11	114981606	114982606	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145437)	TTS (NM_145437)	7780.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	6.63075319231753	6.65773634284206	6.36005191348197	4.5839892627376	4.42658878846425	4.74010574678233	-4.09178892526458	1.92782733335822e-25	3.56468126120157e-22
Merged-chr13-111941378-1	chr13	111940878	111941878	+	922.0	f0_balb.idr	Intergenic	PB1D10|SINE|Alu	73442.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.43083488847155	4.20362418809187	3.86475138246342	4.102664730926	3.95627770284955	3.88192656618054	-0.604330917332063	0.247369019674501	0.644265503899033
Merged-chr10-117755520-7	chr10	117754948	117755948	+	891.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 26 of 27)	intron (NM_134010, intron 26 of 27)	-9090.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	6.11637461971611	6.32635427484406	6.47794197507454	6.60199351590183	6.52175656756783	6.60484929024492	0.434881913073537	0.113998330016383	0.450886303830234
Merged-chr5-142385475-3	chr5	142384982	142385982	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16015.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.26933392708947	3.32187605984269	3.51416159045846	3.24234191603121	3.22554542963122	3.37314208575686	-0.355396456191985	0.56133255139341	0.865407801976397
Merged-chr2-153342513-2	chr2	153342013	153343013	+	573.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3297.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	3.51110281283275	3.49319441643217	3.32757293595848	3.40521873727495	3.39259574907918	3.45627755253104	-0.13450430064536	0.81885749126836	0.957120499711436
Merged-chr3-115762815-3	chr3	115762299	115763299	+	878.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47744.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.34746331305983	6.74550804611827	6.61654639580262	6.35716133469191	6.42279252991339	6.48840839767163	-0.256531873919763	0.35734118042964	0.743899047815599
Merged-chr12-26460270-4	chr12	26459753	26460753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3801.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	6.44321094113828	6.33110275693858	6.38226663586547	6.90350613415097	6.74795708055648	6.04283120316073	0.38795646537541	0.233563315227307	0.629836294896575
Merged-chr8-83090274-4	chr8	83089763	83090763	+	853.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75089.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.11117030466046	5.90732712767578	5.75861890695968	5.80428760829705	5.67535898642138	5.37121521570732	-0.541446139569711	0.103354211305146	0.428463201325997
Merged-chr8-39599174-1	chr8	39598674	39599674	+	910.0	f1_balb.idr	intron (NM_001113326, intron 8 of 9)	MT2A|LTR|ERVL	43504.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.33025834104714	3.38714138562248	3.34251772972779	3.49894874410899	3.38456993760119	3.77713737162962	0.748326911341978	0.211979871843318	0.604420229358776
Merged-chr14-121366391-4	chr14	121365869	121366869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	12861.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.05988061489071	2.77904154374707	2.7335563774718	2.87959770458921	2.63971775188486	3.05184132288315	-0.023167478317589	0.975651446397082	0.994540154302743
Merged-chr13-50418887-4	chr13	50418368	50419368	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154272, intron 1 of 10)	RLTR30B_MM|LTR|ERV1	1004.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	5.01341002760739	5.22292924445753	5.27579354127374	5.62747178057436	5.70965615675042	5.49299760371594	0.878125274433827	0.0102034949533567	0.101824467267798
Merged-chr13-47044444-4	chr13	47043937	47044937	+	804.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172262, intron 1 of 20)	intron (NM_172262, intron 1 of 20)	938.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	3.73919057497146	3.62336457044002	3.60906335659741	3.64127932931682	3.72039775952914	3.56967983678674	-0.0355763222784831	0.948337407848737	0.988083630162243
Merged-chr3-94837411-4	chr3	94836912	94837912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172683)	promoter-TSS (NM_172683)	-155.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	7.34001398268174	7.35036084836272	7.32313055907514	7.42415379122307	7.451019877748	7.52618765406223	0.187490586949967	0.40068310482985	0.776924744715187
Merged-chr8-105880886-4	chr8	105880397	105881397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181594)	promoter-TSS (NM_181594)	16.0	NM_181594	234699.0	Mm.28979	NM_181594	ENSMUSG00000036270	Edc4	BC022641	enhancer of mRNA decapping 4	protein-coding	5.32285973833631	5.52844486214404	5.31086015028565	5.59596583463887	5.33230353952159	5.276795305241	0.0290087803705401	0.933597764185571	0.985573927104456
Merged-chr2-156147456-3	chr2	156146968	156147968	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291114, exon 17 of 17)	3' UTR (NM_001291114, exon 17 of 17)	3235.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	5.7012741505297	5.58451473188237	5.27747726703616	4.61052616167067	4.86985829862511	4.91828219173503	-1.52560236253166	7.00508012048599e-05	0.0020906696795746
Merged-chr5-143909902-4	chr5	143909422	143910422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008886)	promoter-TSS (NM_008886)	-79.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	6.69450193628888	7.22633024845396	7.09356713806985	6.91463362546433	6.97202196554033	6.60275557045283	-0.27028400620691	0.345226451588631	0.733666487940844
Merged-chr2-18066512-2	chr2	18066012	18067012	+	570.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 2 of 22)	B1_Mur1|SINE|Alu	1927.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	4.01402577116104	3.95893968290686	4.1895598084691	3.91396089376419	3.94277736913492	3.93128760024664	-0.362974703026815	0.464378060464153	0.816394879676765
Merged-chr1-165645375-2	chr1	165644875	165645875	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.88936843026832	4.77142953610311	4.65969482640953	4.62031143050241	4.5248523837842	5.1445991310714	-0.00445986467818916	0.99189097293815	0.998351393644539
Merged-chr6-8691836-2	chr6	8691336	8692336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	RMER17C|LTR|ERVK	66622.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	4.92506798086917	4.82116791479572	4.8766407069378	4.66679334508389	4.41314253376607	4.79528376106361	-0.58924621127269	0.151329108368065	0.518614043990544
Merged-chr2-83740027-3	chr2	83739478	83740478	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	15581.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.34095142415303	4.352835969779	4.61028941532783	4.52905374447523	3.96490806509867	4.47983160994443	-0.240009419347343	0.624865368569656	0.89225655223638
Merged-chr10-10132766-4	chr10	10132276	10133276	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-231736.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.31639868255244	4.17123316040404	3.97094735942142	4.13673526596298	3.58598061461509	4.2750195188668	-0.388458347077964	0.488735617849909	0.829423271678195
Merged-chr19-11816915-1	chr19	11816415	11817415	+	740.0	f0_balb.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	2488.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.04692266802721	5.39515283352322	5.22254339073754	4.69546741831141	4.71075048633826	4.98896249570571	-0.942667156069138	0.0154722474744347	0.135591840066676
Merged-chr14-58319394-1	chr14	58318894	58319894	+	764.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	246708.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.42161845869866	3.27844767636772	3.56581131511664	3.42249949730604	3.40835549838236	3.63518845337555	0.247029681319893	0.677166840824669	0.912699165331091
Merged-chr11-54492253-4	chr11	54491767	54492767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 9 of 17)	L1MB3|LINE|L1	-30578.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.03949386003982	5.73993540395563	5.90738478565432	5.91984909539066	6.06851431973262	5.89586932176522	0.120913853592076	0.691839806160333	0.9184939224729
Merged-chr16-28929058-4	chr16	28928579	28929579	+	885.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	CpG	619.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	3.31890577419514	2.89192103995514	3.15583237777913	2.99610429062004	2.86630007286377	2.79664916149208	-1.13520569759158	0.117413078497842	0.457533247583403
Merged-chr2-133442765-3	chr2	133442245	133443245	+	799.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109414.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	2.7246091018733	2.87501671744098	2.81709848354587	2.68736420430872	2.5140229905998	2.76837711375914	-0.829952547121583	0.272190940872606	0.66953956602346
Merged-chr17-45756745-2	chr17	45756245	45757245	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	22239.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.85589994507424	2.71628780606321	2.98021275834586	3.18368391974905	2.80732588228029	2.59909099324236	0.163511929284118	0.836474018363255	0.962001762335242
Merged-chr19-40707687-4	chr19	40707185	40708185	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	BGLII_B2|LTR|ERVK	47915.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.99468496232856	7.13510380385427	7.10712729605569	6.91008707289609	7.23066244939377	6.95218509152648	-0.048292349864568	0.848019673834915	0.964318271116593
Merged-chr5-3279221-3	chr5	3278727	3279727	+	621.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-64666.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.23403547403094	3.3342834450104	3.59414295880035	2.98095885704813	2.90795476809499	3.36136226869539	-1.27369022441221	0.0661904615759776	0.335807324359121
Merged-chr17-34592164-4	chr17	34591647	34592647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-324.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	5.83429261734423	5.68984057312162	6.25134483528861	5.97237311813215	5.55204227357293	6.17863157727457	-0.0369049742321453	0.918056147944798	0.981747877135909
Merged-chr4-41135370-4	chr4	41134843	41135843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-678.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	7.2582973295236	7.39551608802286	7.47175500687543	7.60608182888652	7.29510878253926	7.60536633919291	0.190960150605114	0.429381293649424	0.795682190695026
Merged-chr14-17658557-2	chr14	17658057	17659057	+	670.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2403.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.66265100385082	2.7027468104888	3.1264324329166	3.15365168767549	2.68852458026476	3.0294135361563	0.599796746441303	0.439028743736418	0.800937323779458
Merged-chr4-132352800-2	chr4	132352300	132353300	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003270, intron 1 of 2)	U17|snRNA|snRNA	886.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	5.79294126879066	6.07235690402867	5.92906581751349	6.05492136513514	6.42568399185218	5.57620807455504	0.249618150700419	0.48456380849079	0.826955188719244
Merged-chr6-70864471-4	chr6	70863974	70864974	+	959.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	19959.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	3.9154675544724	4.07112298131766	4.02801957871518	3.81142055844723	3.81959730440097	4.0495164065524	-0.353956939032934	0.484353384452711	0.826798902252394
Merged-chr9-47642159-1	chr9	47641659	47642659	+	618.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	111807.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.75649432051634	6.27743626835606	6.59107276659818	6.50365627564496	6.58725530419394	6.35960519798358	-0.100804490082972	0.727242157453926	0.930129506554556
Merged-chr15-81522261-4	chr15	81521763	81522763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55947.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	7.59288932949942	7.20074908619869	7.3579253074397	7.80413380286543	7.79581124405417	7.46954043701667	0.450406840542949	0.0731703337656768	0.355503744714144
Merged-chr2-91729663-2	chr2	91729163	91730163	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-475.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	4.91268724788329	4.91315091185555	4.94123652450716	5.53285616730002	5.33274916431294	5.00784427833069	0.823491334840384	0.0292491441527019	0.205512314056017
Merged-chr17-23982358-4	chr17	23981847	23982847	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7117.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	6.96210749017301	6.80968994362223	6.76897473394142	7.46361781904042	7.79476780931935	7.30481579972157	1.03769032013995	6.88303823318316e-05	0.00205793692169136
Merged-chr7-4502824-4	chr7	4502241	4503241	+	896.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1061.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.06114098589086	5.95404332803078	6.2050390274018	6.44322453586116	6.38652448425633	6.41923259378819	0.579446299144209	0.0370292715164501	0.23730218918213
Merged-chr17-28233192-1	chr17	28232692	28233692	+	1000.0	f0_balb.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	438.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	8.61077841298407	8.99095466935396	8.35857199087698	8.66841732788153	8.89925965163334	8.33203213064352	-0.0360332222192149	0.893474116351277	0.975237866709772
Merged-chr10-81408992-4	chr10	81408483	81409483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-592.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	8.06421524923947	7.86834184606187	7.69116371956174	7.82827626835086	7.90270761642837	7.38604972335659	-0.220175266362018	0.393030502722743	0.771429661681589
Merged-chr10-41951358-4	chr10	41950849	41951849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 11 of 17)	MTD|LTR|ERVL-MaLR	63910.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.53374193434392	4.52750789735396	4.55331933603894	4.29063711270451	4.38164463009094	4.53864108670566	-0.343194803490623	0.425246982601449	0.792988748085012
Merged-chr7-26248184-2	chr7	26247684	26248684	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18647.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	4.01224556962928	4.33502061164749	4.64038835704989	4.46372832023312	4.24384583519986	4.2093575654906	-0.0885625201295063	0.857771871557389	0.966785186918462
Merged-chr19-18624074-4	chr19	18623589	18624589	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7724.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.48771961207546	5.27844353151729	5.40483940119776	5.01184474225389	5.19610941842875	5.04499363505143	-0.603634424366506	0.0903952733602325	0.399894194574843
Merged-chr14-120324448-4	chr14	120323949	120324949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	(TCC)n|Simple_repeat|Simple_repeat	17997.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	5.39827044388715	5.17768601133004	5.21985321809102	5.69830425488548	5.55320005181926	5.41420059074748	0.568202684598585	0.0968762489249463	0.414931740389506
Merged-chr15-58758398-4	chr15	58757903	58758903	+	941.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.72356710740785	4.57736674060146	4.04771525528209	4.57527438800803	4.44550666742783	4.63879595633091	0.145864103049787	0.763421831965071	0.941793063578371
Merged-chr6-116072450-1	chr6	116071950	116072950	+	561.0	f0_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-77445.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.45396041098573	6.67892249870767	6.31633493751048	6.17375263330431	5.93180021268461	5.82055033024249	-0.853342375040568	0.00438613593610748	0.0557874654496532
Merged-chr19-56548554-4	chr19	56548032	56549032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018831)	promoter-TSS (NM_018831)	271.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	8.11392089439542	8.52240011822362	7.98403048907365	8.04282833544261	8.27309595906245	7.79092130607265	-0.247994596439597	0.345850879903315	0.734290015947412
Merged-chr6-88435831-3	chr6	88435318	88436318	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	10721.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	2.70802852646025	2.79728342322477	2.84904091958716	2.86641517668463	2.84495185670614	2.98076415472293	0.563726203197354	0.423855355562461	0.792272050905538
Merged-chr6-86438614-5	chr6	86438096	86439096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243741)	promoter-TSS (NM_001243741)	-50.0	NM_001243742	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	8.70992920110694	9.16974055798103	8.70029512469987	8.84184146912714	8.98472382971599	8.54063609345613	-0.107327620591048	0.666497228389008	0.908222812547781
Merged-chr8-13162320-4	chr8	13161824	13162824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	3163.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	5.85131609347002	5.85423723790889	5.73074573182799	6.14143212111225	6.08548259521457	5.59151795763328	0.278190901106295	0.393803050703304	0.771940960060713
Merged-chr13-4767076-4	chr13	4766583	4767583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-157919.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.99743086303355	4.02441462003251	4.17198025743927	3.96573499215111	3.72271935112485	3.91234731259057	-0.600641306326813	0.23642094729417	0.632720263621021
Merged-chr1-34828098-4	chr1	34827603	34828603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	14947.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.58533784276052	6.92498408029026	6.58771489411991	6.54228938931653	6.50450542901799	6.36971889626348	-0.378436051929716	0.168860803412334	0.545526080537875
Merged-chr8-104247215-4	chr8	104246711	104247711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	1347.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	7.96572363724196	8.09816458214325	7.75900826110401	7.64456272564099	7.88075082758804	7.20654989790067	-0.477974610175852	0.0780401870230152	0.368845675182172
Merged-chr4-43480221-2	chr4	43479683	43480683	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3526.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	2.69666253676138	2.82443556593196	3.05351103350941	2.75636305957055	2.92062244194385	3.01235476213718	0.186047644344767	0.797456856420507	0.951799370596145
Merged-chr13-23764318-2	chr13	23763828	23764828	+	870.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	660.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	5.50191016410856	5.38642508077578	5.39332373230152	5.35401676615214	5.79560642282371	5.87903231927797	0.49681791453858	0.152702257313056	0.52106005439839
Merged-chr1-182528129-4	chr1	182527608	182528608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10498.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.9250928732264	3.54384142110053	3.77636102088818	3.57099848320396	3.53298305687053	3.28204775730209	-0.992029661147252	0.10135134370081	0.424634572339226
Merged-chr7-98962960-7	chr7	98962410	98963410	+	818.742859	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	ORR1B1|LTR|ERVL-MaLR	124065.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.49696088682713	2.35798747053674	2.69244967405231	2.24515983838771	2.43329015942949	2.46087670227478	-0.835286124092228	0.325450111126306	1
Merged-chr4-55532593-4	chr4	55532081	55533081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-106.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.05511942310226	7.84611158765847	7.51144342911274	7.89310093006735	7.41087660265826	7.34690865073074	-0.362805938079593	0.194383908166594	0.581623213598297
Merged-chr17-34284645-2	chr17	34284145	34285145	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	3126.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.70613705183368	2.79282654659133	2.82724820748507	3.35040531178969	3.34809271477802	3.32860865456068	2.88740365144682	0.000139598072273354	0.00374475514688503
Merged-chr4-74305912-4	chr4	74305399	74306399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 4 of 20)	URR1B|DNA|hAT-Charlie	54020.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	4.85991638079286	5.12446747965925	4.98978356368893	4.98406016096798	4.91722369348398	5.12197060965391	0.0113271070729978	0.976117535039358	0.994572735300192
Merged-chr11-101551992-4	chr11	101551509	101552509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	-54.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	7.9938976206427	8.19152858828462	7.39645159210724	7.95542182861304	8.31033822118345	7.46517758419672	0.0769928357116394	0.81093778230776	0.955096593239846
Merged-chr4-53109003-2	chr4	53108503	53109503	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	50892.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.90268579339426	5.88692489953894	5.74924208246484	5.75441004590606	5.97847059119447	5.5563777662168	-0.112510208965938	0.725832573976549	0.929724409589692
Merged-chr9-21127061-2	chr9	21126561	21127561	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	intron (NM_001205312, intron 3 of 24)	4214.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	3.88871738958121	3.89177627927761	4.25420268634621	4.00588498722049	3.96377893720423	4.15029237615802	0.0748601992249777	0.882524476906525	0.973184220613163
Merged-chr15-100638487-1	chr15	100637987	100638987	+	673.0	f0_balb.idr	Intergenic	Intergenic	-1547.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	5.30698351984012	5.42318370979617	5.64993445832193	5.73520313176296	5.50967480212958	5.68580302900057	0.348913615244634	0.297378622840901	0.694050276263484
Merged-chr17-55962925-2	chr17	55962425	55963425	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3524.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	4.41945417898677	3.73797026331977	3.92218682103539	4.41470042807177	4.40232956052546	4.04831280155986	0.639803251799434	0.247212315940104	0.644145276280485
Merged-chr1-177442067-4	chr1	177441574	177442574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355101)	promoter-TSS (NM_001355101)	-277.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	6.17126597866346	6.37775040599373	6.13677855028845	6.36888522895528	6.18609935291659	6.45229636101908	0.155424120468916	0.586406193134375	0.875537170614123
Merged-chr3-126650569-4	chr3	126650075	126651075	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	53624.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.55184025712611	3.60379661281749	3.39844390553888	3.58602719338995	3.36553647875344	3.63510706369501	0.00537161810124522	0.992659305924967	0.998523796268552
Merged-chr9-113780256-4	chr9	113779766	113780766	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-13064.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	7.19133702498179	7.53173853120167	7.00873691746091	6.78467882483236	7.29011406017197	7.02558122972448	-0.319954052150751	0.263995123089448	0.661879105198449
Merged-chr19-38015750-4	chr19	38015237	38016237	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	27840.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.76007740115031	5.5027758626301	5.68084818272662	4.43170407465937	4.42046048735208	4.97836384670328	-2.22561351625838	5.74187936272987e-08	4.35755138207085e-06
Merged-chr9-15305200-1	chr9	15304700	15305700	+	608.0	f0_balb.idr	intron (NM_001199484, intron 1 of 8)	intron (NM_001199484, intron 1 of 8)	967.0	NM_001199485	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	4.57011283737255	4.70804903312408	4.9836736834077	4.84563715878635	4.67446538265371	4.46781543586284	-0.181349846534617	0.672486806597061	0.91086468829214
Merged-chr1-149827194-4	chr1	149826697	149827697	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95242.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.05458771946784	3.7848867089209	4.12731910788093	4.84831710604384	4.5847230180305	4.43209028921946	1.74238041037778	0.000319924580530175	0.00734150151592796
Merged-chr1-144240162-3	chr1	144239650	144240650	+	726.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	8954.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.13753505354236	2.97486142834906	2.78573531057062	2.99093941446937	2.98771483729715	3.1087113314678	0.220250983237079	0.753636181670366	0.938570691167124
Merged-chr17-33993976-2	chr17	33993567	33994567	+	913.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6266.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.33516541431932	2.66274357628311	2.7350575809818	2.69785493990446	2.55075684607806	2.80814523230941	0.546550787801624	0.506108650623019	0.838289047715586
Merged-chr12-100110691-2	chr12	100110191	100111191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1640.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	8.10508252786911	8.24529701727594	8.23816937157856	8.03007253096025	8.33040094506657	7.87672845905275	-0.134160481298864	0.564856272380153	0.866552670637515
Merged-chr16-21909114-3	chr16	21908601	21909601	+	856.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 7 of 12)	intron (NM_172821, intron 7 of 12)	17132.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	4.88908670190265	4.90155698157618	4.33638273689216	4.85691263175243	5.03547882200152	4.60073271657831	0.237753771473825	0.60103791800486	0.881855262262798
Merged-chr10-44003844-4	chr10	44003360	44004360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 1 of 20)	exon (NM_172393, exon 1 of 20)	986.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	7.71528597576158	8.07860968776563	7.5061596648338	7.95718389436019	7.89938278679264	7.92399763227261	0.183520151677947	0.461434202432576	0.814992635038861
Merged-chr6-42419649-4	chr6	42419155	42420155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14126.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	3.90489911409544	3.74273989205471	3.7456865891942	3.55531297051605	3.50318788213831	3.71241454891474	-0.738344318359269	0.178324683320122	0.559402033136986
Merged-chr7-44835612-4	chr7	44835107	44836107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-681.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	4.92912044059525	4.52545929448935	4.80351842866271	5.36364172921898	4.74541582009434	4.87019357108619	0.570885486075752	0.191853016652492	0.578684294521097
Merged-chr2-167350620-4	chr2	167350113	167351113	+	870.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.18649071450194	5.8539364783774	5.84858274351667	6.22407382231754	6.05615234595404	5.9106536711229	0.16423847463515	0.597010881538783	0.88011264230803
Merged-chr12-8641078-4	chr12	8640618	8641618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33016.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	7.06038195232114	7.46901346896165	7.22644242389171	7.29771098078349	7.45484671911562	7.02599575046242	0.0219525640153368	0.934152685773572	0.985707838096286
Merged-chr2-60881082-9	chr2	60880549	60881549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	CpG	389.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	8.21735383448274	8.32480304869515	8.1378528877535	8.26899059218956	8.09839651209373	8.05994161201446	-0.119778444624736	0.573818626600191	0.870325272361113
Merged-chr3-103781708-4	chr3	103781221	103782221	+	813.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	9554.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	4.3395474494693	4.48175378642128	4.27798346174907	4.34214058934599	4.73038378260198	4.52447883344074	0.440148244789889	0.327599086003081	0.719793584677403
Merged-chr17-47924538-4	chr17	47923933	47924933	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110824, exon 1 of 17)	5' UTR (NM_001110824, exon 1 of 17)	199.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	4.18095497969287	4.19721665828327	3.81130063844317	4.03620950915715	3.49767686937986	3.82913378455227	-0.844029051661696	0.137644684949092	0.495978648243722
Merged-chr3-109360959-1	chr3	109360459	109361459	+	685.0	f0_balb.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	20276.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.11030585299307	4.58901337359638	4.73611463148967	4.15167657924399	4.05103053016866	4.20130030150823	-0.976524332840591	0.0481668931225833	0.27824707323965
Merged-chr11-83440940-2	chr11	83440443	83441443	+	810.166687	f0_balb.idr|f0_c57.idr	3' UTR (NM_172797, exon 8 of 8)	3' UTR (NM_172797, exon 8 of 8)	3249.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	3.01949924107978	3.32844772294351	2.94636529869526	3.20255512682709	2.97405078820854	3.20304784561596	0.0535441176216307	0.938091483513319	0.986274416691006
Merged-chr10-23522804-3	chr10	23522306	23523306	+	823.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172863.0	NM_010167	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	2.44460601439833	2.44016294833177	2.33372715572187	2.55833015575337	2.42283174809439	2.60250008450617	0.717256392896642	0.375847842842801	1
Merged-chr11-21220020-2	chr11	21219520	21220520	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19012.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.4454427770798	3.65748867527036	3.54769823361465	3.46703724697815	3.68410326964233	3.61822570919208	0.144913316806455	0.799233099735309	0.952241087526368
Merged-chr8-117067174-4	chr8	117066679	117067679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	15270.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	3.68321894388727	3.23350075288251	3.36976448415977	3.90528571077926	3.64679627884226	3.56141216794577	0.934249149938426	0.130698801172705	0.483186228268893
Merged-chr1-171735117-4	chr1	171734609	171735609	+	895.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32023.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	3.36446951440361	3.27967485781031	3.06250763076094	3.4109420081894	3.46558181450338	3.43684802341886	0.74307026041138	0.237336756848559	0.633730725365986
Merged-chr1-171620368-2	chr1	171619868	171620868	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12958.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	4.14517350803257	4.0235618428078	4.412544147499	4.18534690915389	4.25556959796417	4.17853910922873	0.045877139238611	0.92343210027212	0.982699256056545
Merged-chr6-135163559-3	chr6	135163166	135164166	+	698.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	B3|SINE|B2	4549.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	4.15777839821304	4.25491921863042	4.44171168403685	4.10959430258139	4.02225857346681	4.11823046991006	-0.566431416986423	0.231351327484282	0.627189055416517
Merged-chr1-184808822-2	chr1	184808322	184809322	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	intron (NM_001290273, intron 1 of 6)	2478.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	5.26236243092327	5.07627122922655	4.77323384388857	4.83527863846971	4.8940255317896	4.88006698185541	-0.420407305389721	0.286167873147096	0.683463892237707
Merged-chr6-33867054-4	chr6	33866543	33867543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-162405.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.35868669970643	4.80664829887267	4.7027473752544	4.71200930186438	4.59836069980927	4.69080857562599	0.067900551433963	0.874537968644961	0.970754540400126
Merged-chr17-29393689-6	chr17	29393136	29394136	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32722.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.13792842153882	5.56077316088563	5.16952741290739	6.06989561881114	5.99134346779889	5.48806823329477	0.324566377043328	0.436519749565342	0.799492139444127
Merged-chr6-48554795-4	chr6	48554305	48555305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177736)	promoter-TSS (NM_177736)	6.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	7.39728931582032	7.57721797915749	7.43201995360976	7.39762904776939	7.81173304711057	7.39190373972682	0.1257047514766	0.617068376605116	0.888700457965624
Merged-chr15-101258528-3	chr15	101258005	101259005	+	861.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8341.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.17511148088862	6.09020499363259	6.1525406698751	6.4516928290812	6.42674415005412	6.31589003114998	0.441376116054356	0.105871708150322	0.434365814889403
Merged-chr18-64489089-4	chr18	64488598	64489598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348055)	promoter-TSS (NM_001348055)	0.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	7.39063702255421	7.7862368789049	7.06186050528912	7.36189890751838	7.18002107826296	6.71308811443679	-0.496460682396287	0.111537902088253	0.44610871740816
Merged-chr11-95821637-8	chr11	95821132	95822132	+	791.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2868.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	2.53149305874772	2.58605373770367	2.68185692167003	2.60344230268177	2.53494860591453	2.50266798296095	-0.289879993156002	0.706639264636639	1
Merged-chr2-165884006-3	chr2	165883538	165884538	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	800.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.41126674945142	7.46578774645478	7.52651547118728	7.78514222309475	8.0302355459497	7.57347780968771	0.510485128493145	0.0334508756547142	0.223313580028679
Merged-chr17-26138678-4	chr17	26138213	26139213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009733)	promoter-TSS (NM_009733)	27.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	6.20231258776601	6.20526459392016	6.2014271346011	5.9244195191293	5.57143311824028	5.95894547324001	-0.670927188393615	0.0279608366941063	0.199773767786639
Merged-chr2-90524025-2	chr2	90523525	90524525	+	607.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-44851.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.8203494226688	4.6525131439984	4.97580474941112	4.88259556824893	4.70979372256334	5.1049724902481	0.186260588431882	0.64655981920102	0.90100465546023
Merged-chr4-11005200-3	chr4	11004723	11005723	+	704.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	PB1D10|SINE|Alu	2396.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.11406776214553	3.80655256605638	4.04828359607675	4.01804833592078	4.16017063424202	4.11680379531373	0.313744917155231	0.527724384143363	0.850108008834301
Merged-chr6-135295775-3	chr6	135295275	135296275	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	6.1171695540382	6.70339433756964	6.34370672495861	4.82401260344097	4.84320314054373	4.94195303469443	-2.95718097983955	1.22863967796479e-15	3.81465113149606e-13
Merged-chr13-12256028-4	chr13	12255529	12256529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	2084.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	7.27995022638912	7.62055306011302	7.09546641154184	7.38357419060367	7.82789975617463	7.29296315869477	0.255287658304327	0.369623569519842	0.754243198058528
Merged-chr12-69448586-2	chr12	69448086	69449086	+	973.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26964.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.55370055564032	7.62789345722082	7.38897498141542	7.62195826471742	7.97753014338869	7.40135524936247	0.244515826926171	0.34616061447376	0.734515828466387
Merged-chr6-116002609-2	chr6	116002109	116003109	+	801.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7604.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.36627502848669	3.16833853662372	3.22239363762971	3.42235222810262	3.10667635263359	3.51496163652735	0.383866281428951	0.549332127653759	0.860273914502926
Merged-chr11-50227291-4	chr11	50226753	50227753	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	1918.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	5.63535191709624	5.56389323152825	5.91039079257381	5.88165455605315	5.80933494657441	5.64401882359713	0.158558479275544	0.621674961998117	0.890838690442753
Merged-chr7-46838294-4	chr7	46837771	46838771	+	818.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7533.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.11803387965056	6.1886876725441	6.50737040014873	6.07576891785517	6.02711875784829	6.24282375099282	-0.270593327330663	0.361824306871558	0.747478680384173
Merged-chr3-75556915-4	chr3	75556374	75557374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-22.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	7.53072673849959	7.58079810588091	7.47900282152371	7.65963997887654	7.89520573710202	7.51531074411778	0.254477578134163	0.278293643393533	0.675562548632876
Merged-chr2-125788493-4	chr2	125787998	125788998	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5628.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	5.58867176870296	5.4098246458457	5.74201651846389	5.39276317851248	5.62627405487976	6.04754220395764	0.235674693434546	0.512024034463218	0.841654532746362
Merged-chr5-139313708-2	chr5	139313208	139314208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	11756.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	4.21954060045519	3.9302065370576	4.00391627419348	4.08683290384879	4.03255011103886	4.02390673377795	-0.0340206735221561	0.944908211878246	0.987875414328125
Merged-chr5-117134245-4	chr5	117133791	117134791	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	703.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	7.29568865594031	7.72655505342415	7.31846502892534	7.4738349209329	7.61554081592901	7.10033734014816	-0.0651683628581765	0.81262243562629	0.955685883418029
Merged-chr17-35578409-4	chr17	35577922	35578922	+	753.862488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10937.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	1.87327999325217	1.93369689532198	1.8603930497153	2.09830099709804	1.93598302245138	2.46780832292998	2.31176349014223	0.0279496423668221	1
Merged-chr11-85234607-3	chr11	85234102	85235102	+	978.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028329)	promoter-TSS (NR_028329)	518.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	8.34268525105731	8.42484064969372	8.29398563621668	8.09606815351482	8.10435397650016	7.84785012988065	-0.463302136860017	0.0310552623418385	0.213332178739267
Merged-chr16-13256492-7	chr16	13256008	13257008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122667)	promoter-TSS (NM_001122667)	27.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	6.60498195144122	6.79646773198484	6.55470893748697	6.58027188131866	6.32216076261257	6.41402001990461	-0.355932310609505	0.189418215157974	0.57526501375519
Merged-chr5-24390026-2	chr5	24389526	24390526	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002897, intron 4 of 13)	Charlie1|DNA|hAT-Charlie	2117.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	2.51491080451634	2.25429727762267	2.49717659646979	2.28064856405076	2.36123748155623	2.24454581741042	-0.823082413454342	0.341213201277604	1
Merged-chr1-131253875-3	chr1	131253400	131254400	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019777)	TTS (NM_019777)	-8722.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	4.22313892517518	4.14630813078389	4.30338108233771	5.15003686695804	5.18292743598593	4.92305844185155	2.12096293454928	5.21643419451271e-07	3.04382227529463e-05
Merged-chr17-25282305-4	chr17	25281802	25282802	+	953.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31B2|LTR|ERVK	-7992.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	3.52624390551316	3.71469014707931	3.97962636694854	3.3880939678394	3.25767612730695	3.28165573657672	-1.62896789008343	0.0083089344076923	0.088387856583388
Merged-chr6-97867362-4	chr6	97866866	97867866	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	60308.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.12022028205041	5.95563862049376	6.19469133084478	6.00481249420855	6.07370692775272	6.42225825917998	0.138052091634669	0.648698267966232	0.901893237722341
Merged-chr7-44892582-8	chr7	44892077	44893077	+	932.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029365)	promoter-TSS (NM_029365)	-153.0	NM_001331206	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	7.51188651995737	7.86145187911638	7.53930142071301	7.60211936063073	7.73297650760668	7.59611253144169	-0.00652256330110894	0.978097143621155	0.995030163419761
Merged-chr12-55451273-2	chr12	55450773	55451773	+	756.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	41374.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.05298371542018	5.03436061621651	5.12156265815807	5.18598191142348	4.94366440750676	4.9770161016519	-0.0591351113723316	0.872638606124925	0.970261003150518
Merged-chr9-13742646-3	chr9	13742159	13743159	+	898.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6522.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	3.51134204662274	3.30614912828186	3.8699694995107	3.4018701970893	3.46753715528804	3.70451825168814	-0.172932203533864	0.778391810426665	0.945441651271158
Merged-chr4-139252159-4	chr4	139251658	139252658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58047.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.76726599237495	6.59012952168643	6.95302299641672	7.01315217689693	7.2462843291476	6.91362959705158	0.465938115367838	0.0788865600268607	0.371035717976091
Merged-chr7-80346402-3	chr7	80345902	80346902	+	915.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026812)	TTS (NM_026812)	3265.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	3.47305820827213	3.62431233511649	3.50364790854951	3.32380796924179	3.16351409087671	3.16970001114364	-1.26011386625197	0.041426840919945	0.254450769858034
Merged-chr11-78348115-4	chr11	78347605	78348605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011676, exon 4 of 5)	exon (NM_011676, exon 4 of 5)	1395.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	5.48746509173792	5.02680800547298	5.77840862174319	5.73119101365679	5.63257412629769	5.9954955957769	0.617532299436528	0.102539164781413	0.427066706837844
Merged-chr2-50296624-4	chr2	50296140	50297140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040361)	promoter-TSS (NR_040361)	161.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	7.60239401636855	7.68510200046288	7.51287000241506	7.58519835546596	7.47273311378093	7.33316288287078	-0.195299011978957	0.393302892031523	0.771515439837752
Merged-chr7-19683897-4	chr7	19683393	19684393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-2433.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	7.04338485372018	6.86976697262862	6.76708536622946	6.768315580869	7.01495185587471	6.57200909043923	-0.143343260523509	0.598737198257874	0.880808927175713
Merged-chr2-167779617-2	chr2	167779117	167780117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	88440.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.83515319518851	3.6954470142071	3.58350953611404	3.87082639494799	3.61147539394812	3.54084707462678	-0.0973784917619353	0.862517045670799	0.96807605498315
Merged-chr4-133205060-4	chr4	133204519	133205519	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7517.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	5.68383459176597	5.24924896303112	5.14425488228579	5.10963526277585	4.64557615672983	5.06962816222677	-0.906349218689577	0.0265857044285186	0.193894582705598
Merged-chr6-122875394-2	chr6	122874894	122875894	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026267, intron 1 of 7)	intron (NM_026267, intron 1 of 7)	837.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	5.42373211862891	5.09497940412126	4.77632134031465	5.52041865294109	5.27096553451569	4.97070002622436	0.287737396623567	0.490262682725122	0.830042606694236
Merged-chr4-126428585-3	chr4	126428111	126429111	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 1 of 18)	(T)n|Simple_repeat|Simple_repeat	931.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	5.86397516731631	6.05184756768853	6.20579015223568	6.0078410167735	6.22725527635489	6.03182669504705	0.102319162257313	0.733275026302226	0.932039456283818
Merged-chr10-95417613-2	chr10	95417113	95418113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007706)	promoter-TSS (NM_007706)	238.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	4.77794297447849	4.48609704715287	4.22390534036676	5.06329072840623	4.91789132707014	4.63297935620258	0.835732902436351	0.0676692718395237	0.340320674019776
Merged-chr16-21286296-4	chr16	21285855	21286855	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	10517.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	3.84327461110243	3.46750506418277	3.72247991101355	3.66053739952831	3.75715393290215	3.93879935924686	0.327765060563742	0.557958201392454	0.86443214373182
Merged-chr2-32447835-4	chr2	32447343	32448343	+	932.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-2614.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	6.84398581843597	7.21091570247817	6.7678222842334	6.69345143843462	7.20445397353377	6.56965702981006	-0.145647709725	0.636910982007221	0.897256731014262
Merged-chr5-30036123-4	chr5	30035603	30036603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	22989.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	5.5069809323461	5.4442080248462	5.55854903435366	4.92113232706893	5.14487325536201	5.36800469922984	-0.700780879165025	0.0495239729701918	0.282949191146262
Merged-chr13-75844424-4	chr13	75843942	75844942	+	713.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	4556.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.43780401083503	4.61393383655632	4.76282886925208	4.65761955535042	4.24677299389925	4.33838605775941	-0.447353361413473	0.323267074444158	0.716622649530138
Merged-chr8-80919279-4	chr8	80918758	80919758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38739.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	3.78883621514718	3.51596301705206	4.12621647827027	3.44440088661908	3.12222309009638	3.64879759999999	-1.4544389085074	0.0256389832496204	0.189750824355992
Merged-chr7-100502748-3	chr7	100502236	100503236	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153527)	TTS (NM_153527)	9378.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.59750148595459	5.72168592045605	6.01089923434225	5.74518941856199	6.10438433664157	5.98312651462981	0.319437069322461	0.325286991082972	0.718077478450679
Merged-chr1-88233343-2	chr1	88232843	88233843	+	842.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 7 of 42)	exon (NM_001281466, exon 7 of 42)	6323.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.08512103600251	2.94849032586721	3.06655242630494	2.77837841372979	2.93795747106624	2.96249508860332	-0.656605402709669	0.34255529804038	0.731471837188352
Merged-chr10-19012057-6	chr10	19011403	19012403	+	965.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	60.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.4925844885835	5.45429175144676	5.17942997423944	6.00742747036107	6.03161858582759	5.92101091428306	1.08622546150726	0.000804820807990817	0.0152406758742148
Merged-chr2-143081910-4	chr2	143081397	143082397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020595)	TTS (NM_020595)	3504.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	5.40127980487514	5.39627917231551	5.42883790453515	5.43556274813766	5.32966567728886	5.33973856542029	-0.0759527543427867	0.819320893309569	0.957264866871257
Merged-chr14-16244056-4	chr14	16243547	16244547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	-716.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	8.53526476656308	8.97155522261767	8.3134971773339	8.65547499231012	9.18968799490439	8.54088717017415	0.263449276903267	0.355577366706951	0.742472851181279
Merged-chr16-35871438-4	chr16	35870905	35871905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-23.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	8.12028506588403	8.20216266320023	8.28893607417277	8.33928161965231	8.47643855886929	8.17826277775949	0.195075734048579	0.364398280180374	0.749773790733149
Merged-chr13-37356203-4	chr13	37355701	37356701	+	929.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10856.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	7.33568426118231	7.08261313512349	7.1349820632273	6.98964721200496	7.40272919755929	7.46991828157623	0.168191575082104	0.522691423973475	0.847683707992767
Merged-chr1-13589923-4	chr1	13589411	13590411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028173)	promoter-TSS (NM_028173)	-1.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	7.70313959539375	7.52594534377264	7.35519093609571	7.54946387204332	7.42929551176359	7.60699059471694	-0.0228306530552548	0.922980585483882	0.982629432513311
Merged-chr9-44734538-6	chr9	44734081	44735081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	intron (NM_153537, intron 1 of 21)	617.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	4.7758376547472	4.32113886082576	4.41992453025606	4.67471815431705	4.19899875003467	4.35214183545625	-0.255429984000512	0.593155991466429	0.878410931874355
Merged-chr3-65953956-4	chr3	65953457	65954457	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	4292.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.83933139209721	6.02206739806936	6.16790390794108	6.29228247039867	6.53905551957554	6.38518915263885	0.681354434088969	0.0188210367218629	0.15529484059659
Merged-chr7-106693145-4	chr7	106692633	106693633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_146452	258444.0	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	4.19665775932538	4.13200305568698	3.86602970393819	4.07202146386296	3.95740941161184	4.22904335013766	0.0062510918777581	0.990037310478751	0.997699191346824
Merged-chr13-4771639-4	chr13	4771125	4772125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162461.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	7.02566459044897	7.24566374080061	6.74622262010742	6.68938238372102	6.70605149168042	6.299424459008	-0.685272354423435	0.0179152477009052	0.150256217185457
Merged-chr4-130808028-2	chr4	130807551	130808551	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	15514.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.05741201222434	6.44971217982359	6.43041363418676	6.26200801206364	6.36314696029473	6.15446645633525	-0.0871763062058645	0.767319979115483	0.942616128122377
Merged-chr18-74393128-3	chr18	74392630	74393630	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49489.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	3.20360385866418	2.93059530388781	3.18753992862045	2.78720834853404	2.84553436876655	2.91038515581205	-1.2709057476182	0.0728640045755921	0.354630208642511
Merged-chr14-65105110-3	chr14	65104583	65105583	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6977.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.62749476501094	3.97639877406559	4.11956716536914	3.73083287763698	3.87831777527284	4.00792318103718	-0.135677460718566	0.803036673070297	0.953422605427866
Merged-chr2-165493340-4	chr2	165492850	165493850	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007581)	promoter-TSS (NM_001007581)	-36.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	4.74854499056917	5.05159763044585	5.32328484709955	5.03089205986578	5.19830495733309	5.17320500694053	0.180882432818284	0.644747179069383	0.900287351502017
Merged-chr3-95871482-4	chr3	95870923	95871923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040446)	promoter-TSS (NR_040446)	91.0	NM_078479	66292.0	Mm.24108	NM_078479	ENSMUSG00000054312	Mrps21	1810031B19Rik|S21mt	mitochondrial ribosomal protein S21	protein-coding	6.89363599249419	6.99570666362181	6.83931502230672	6.83623606924157	7.06223167934859	6.60364550234703	-0.0823277049493843	0.757589723948854	0.939883186830738
Merged-chr1-75234826-4	chr1	75234331	75235331	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_001159884	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	3.23610745044654	3.2016030260965	2.89334500697872	3.13438043787215	3.08463616048969	3.21454630089707	0.0732446703840455	0.913822567501213	0.980805181886885
Merged-chr6-123266047-4	chr6	123265540	123266540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 2 of 5)	L1ME3A|LINE|L1	3933.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	6.49319904590963	6.86348214159861	5.93481983896306	5.85667071326899	6.15612306976655	5.91945536652534	-0.844565366730752	0.0167258582256002	0.143484548808463
Merged-chr11-16978493-4	chr11	16977976	16978976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27066.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	6.0340888298939	6.23283011932565	6.12033321372545	5.90052657542905	5.97714746469231	6.33682743276208	-0.0998851888064398	0.743190460130508	0.935528839299546
Merged-chr8-117362532-4	chr8	117362043	117363043	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	13373.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.51136298947307	5.21634932099741	5.06786849013155	5.56369846201661	5.19711509028869	5.02053953452044	-0.00131900692628879	0.997300377788727	0.999426356843159
Merged-chr13-111804358-4	chr13	111803819	111804819	+	786.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	4674.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.83158849842588	6.61139955475837	6.43138671531244	6.62201404892383	6.43539432050642	6.35375877023987	-0.264405235066095	0.344533299730796	0.733150745942016
Merged-chr1-184729439-4	chr1	184728931	184729931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3062.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	7.42559354742041	7.19861568377132	7.48394343050679	7.43824772857712	7.40470612922367	7.37523218927584	0.0541643622967606	0.816812619669467	0.956754861188725
Merged-chr11-32647448-4	chr11	32646966	32647966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	4911.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	4.88252010347064	4.64679410887716	4.92067496831658	5.04386287984399	4.86287453990786	5.29907772244811	0.56072822253714	0.161945693340563	0.535193761745733
Merged-chr7-131801539-3	chr7	131801059	131802059	+	898.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164901.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	4.22493903518305	4.45921568709216	4.12297460394455	4.73447228160226	3.94018725060275	4.29081645820916	0.218975806553823	0.679213842506179	0.913693374830142
Merged-chr11-64205136-2	chr11	64204636	64205636	+	868.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	125652.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	2.48963939480384	2.65694062160816	2.49886242444871	2.67712491445431	2.70637870710436	2.94352817309238	1.22814159694595	0.117729114565742	1
Merged-chr12-35038151-2	chr12	35037651	35038651	+	643.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-9038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.66347048480284	5.38915665888949	5.45744718482312	5.50638412677605	5.56508990547011	6.11726691664834	0.438920278566678	0.22568220055486	0.620676402041606
Merged-chr19-6276723-4	chr19	6276218	6277218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-178.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	8.54022251087771	8.29916443156577	8.02676441393626	8.12749643482818	8.43348024790555	7.98230728553679	-0.153425450539841	0.545872299856492	0.858391773943739
Merged-chr9-65547227-2	chr9	65546690	65547690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32897.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.6263745472672	6.59695110156869	6.73706492335708	6.81120102391476	6.91771871148383	7.12059155090988	0.467641597155425	0.0680686220680432	0.341417536171971
Merged-chr10-99180333-2	chr10	99179833	99180833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	72198.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	8.22288323580397	8.04442688403227	7.54757735528037	7.92109109235341	8.20735898476214	7.88286402314571	0.055045034116303	0.837422148739343	0.962133986386607
Merged-chr19-36899833-1	chr19	36899333	36900333	+	929.0	f0_c57.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	19766.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	3.24423561076657	3.3305295184123	3.17456591718367	4.1391093356749	4.04549680658572	3.57505696535249	2.52971620061086	0.000103690475873521	0.00292173285353334
Merged-chr7-109703697-4	chr7	109703189	109704189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020616)	promoter-TSS (NM_020616)	-48.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	5.46614335267438	5.55484200271119	5.35742806299524	5.36666794854436	5.36916289218813	5.07909748544869	-0.348394653583097	0.317115794824418	0.711036676253037
Merged-chr11-51890521-4	chr11	51890031	51891031	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-32901.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	6.06371482223178	6.20532641501734	6.16286489960057	6.16157884212096	6.17527160153819	5.84750274580417	-0.107976104212401	0.714631613827634	0.92601294778158
Merged-chr13-23700955-4	chr13	23700460	23701460	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2502.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	4.91085335535707	4.76184007250994	4.93164664333354	5.0205527609635	4.85446158074083	4.92438761952912	0.146795688000666	0.701021523480532	0.921116112272497
Merged-chr12-52284426-4	chr12	52283923	52284923	+	913.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 7 of 10)	intron (NM_029760, intron 7 of 10)	186677.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	3.34164573235274	3.40733372194675	3.59189586516719	3.7790870091245	3.72957894142844	3.49782075915332	0.843181711428528	0.144749470673838	0.507621952799257
Merged-chr5-115279803-4	chr5	115279381	115280381	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026504, exon 1 of 7)	exon (NM_026504, exon 1 of 7)	179.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	8.26458290264821	8.35879160249692	7.65126881321148	7.94231728231881	8.12106624544244	7.72695516993016	-0.270134880473213	0.327320100125127	0.719492019105287
Merged-chr4-148084396-4	chr4	148083888	148084888	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	3676.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.60681105188466	4.36121758330228	4.46763476080558	4.70986572417968	4.70732579680994	4.73902403242272	0.566014362167082	0.174558684535459	0.553857442838487
Merged-chr13-90089623-4	chr13	90089120	90090120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	-12.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	6.62563218657702	6.91975238553532	7.19421339164838	7.0468410396849	7.22823551919592	7.19380835507209	0.355765585992072	0.189822727626574	0.575898496828517
Merged-chr5-65486029-4	chr5	65485577	65486577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	6758.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	5.93025312398261	5.90529577353517	5.91155020232765	6.35018001051276	6.2332981646917	6.23988736759131	0.613619920236426	0.0298593881502032	0.208312230167025
Merged-chr7-62463743-2	chr7	62463243	62464243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013788, exon 1 of 1)	exon (NM_013788, exon 1 of 1)	767.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	3.04776745440435	2.9096697293568	2.91106362248189	2.62033286630396	2.40469762724117	2.73817065867923	-2.18829293413374	0.00914707078139109	0.0946418136754526
Merged-chr10-81176059-2	chr10	81175559	81176559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-572.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	5.88239596229199	5.98316869844916	5.85660583047891	5.9404614573493	6.18047607353761	6.01415620752449	0.249085804119873	0.401196450377338	0.777334515839178
Merged-chr7-143066805-2	chr7	143066305	143067305	+	626.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 6 of 7)	intron (NM_133655, intron 6 of 7)	-2563.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	3.11570351092273	3.12456027886571	3.36922956837674	3.23265874618384	2.9788533554785	3.38686908949509	0.000456771289293554	0.999448910272655	0.999920050950963
Merged-chr12-110703303-5	chr12	110702780	110703780	+	966.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6885.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	4.51221273332614	4.38495503574896	4.08574030826472	4.34822890897648	4.15531213642899	4.3918467551279	-0.141698569947972	0.764503926257783	0.941979298344481
Merged-chr2-73029928-4	chr2	73029434	73030434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-49488.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.39016940206947	4.75708779763052	5.12714975551754	5.1713229537196	5.0209424619639	4.90415076734198	-0.166845024120816	0.683385059522398	0.915427157113777
Merged-chr2-32774796-2	chr2	32774296	32775296	+	666.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290564, exon 2 of 15)	5' UTR (NM_001290564, exon 2 of 15)	543.0	NM_001290564	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	2.36581474170705	2.19488900362606	2.24607952055231	2.31931754729359	2.1602544775901	2.45080228970552	0.262215643124247	0.761948129924159	1
Merged-chr11-17538451-3	chr11	17537965	17538965	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	280777.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	2.89348510394284	2.59744300380673	2.97129795475143	2.61877590851211	2.42194945017142	2.75061481443784	-1.26174072484884	0.118970268428643	0.461031953027688
Merged-chr1-66817638-4	chr1	66817031	66818031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	64.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	8.21043069738435	7.89270532075502	8.01079815762748	8.08633480734962	7.86258556010562	7.90691097018343	-0.128547615959096	0.571327767284898	0.869428183241799
Merged-chr16-65471472-2	chr16	65470963	65471963	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49166.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.20485365290297	2.91815897628533	3.01758105173265	3.28337907911234	3.14728549522671	3.15191384882515	0.613734873407287	0.355920338498365	0.742780956729753
Merged-chr11-70373999-2	chr11	70373499	70374499	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21968.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	5.33774926477899	5.25232963929832	5.29603033014651	5.12711765483558	5.49968094651142	5.69190898289955	0.312274024451121	0.38822258348539	0.768191594174986
Merged-chr17-27133898-4	chr17	27133392	27134392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026063)	promoter-TSS (NM_026063)	-1.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	5.13429545503991	5.33833585695876	5.26722845380562	5.43565045243947	5.28493877348365	5.4225823289529	0.255659009502653	0.458909912793547	0.813236440920954
Merged-chr11-116531774-4	chr11	116531256	116532256	+	848.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172475)	promoter-TSS (NM_001172475)	-155.0	NM_001172475	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	2.03016203270404	2.15440704987864	2.09634163646073	2.28873897991253	2.25653716929042	2.37129274539962	1.53011008539197	0.0909722504423074	1
Merged-chr15-89373600-4	chr15	89373043	89374043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271601)	TTS (NM_001271601)	275.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	7.07708172948443	7.40432550673532	7.34636878936915	7.22026187310224	7.13629613986438	6.95797934295212	-0.252018855008263	0.315498335884326	0.709834518424648
Merged-chr1-172482105-4	chr1	172481602	172482602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-111.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	3.96220339937605	3.75056585583486	3.83019487303256	3.97113168025419	3.85214129899999	3.90010724399975	0.173611055538089	0.735074713161368	0.932617455907478
Merged-chr12-84020742-4	chr12	84020227	84021227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11225.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	7.07988749488479	6.92546580598835	6.48186359227545	6.64438124019558	6.81489038844647	6.36107664235657	-0.363195559187122	0.229262297796457	0.624749364077556
Merged-chr9-113026818-4	chr9	113026304	113027304	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	560348.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	4.34648255823093	4.38001915350022	4.46571747775834	3.98966210414757	4.04311400974317	4.09181819985663	-0.986749685164233	0.0341606761119817	0.226169617314261
Merged-chr7-114291625-4	chr7	114291179	114292179	+	945.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	6.1716030329738	6.51009450639829	6.7530558255243	6.49042837990088	6.58583290358547	6.70719387613246	0.166197848478272	0.571608538757279	0.869547320544841
Merged-chr8-115429705-4	chr8	115429200	115430200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277194.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.2684324747194	5.33179492484219	5.65031599177391	5.14438353493227	5.31502417943417	5.71140742739898	-0.0315494598409457	0.932842050551547	0.98531684549485
Merged-chr11-75760859-4	chr11	75760355	75761355	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 5 of 5)	intron (NM_009536, intron 5 of 5)	27968.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	6.13487811241475	5.71390718103909	5.62112689457844	6.47371289296341	6.04305407933063	5.68534515341486	0.455791845960818	0.215832231347745	0.609232929845416
Merged-chr6-131278339-4	chr6	131277832	131278832	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	14912.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	5.35710939589272	5.63854829877377	5.59899724237121	5.67355108490606	6.05251963908883	5.66172899761837	0.524356683217478	0.121214293342323	0.465641316357903
Merged-chr13-49323188-2	chr13	49322688	49323688	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13980.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	3.88026103697081	3.76099294527009	3.86407778284387	3.66148597476875	3.67511963171328	3.88417905114769	-0.317835007771074	0.547771705283979	0.859445606128575
Merged-chr16-32175376-2	chr16	32174876	32175876	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4424.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	3.00707135160962	2.95945865590991	2.96257500383658	2.94550476515721	3.18279298150068	3.26522019207406	0.715617880588647	0.287309946031059	0.684644217183488
Merged-chr7-45704908-4	chr7	45704417	45705417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-330.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	7.42800369816783	7.47155843672517	7.58833514886301	7.44704582195766	8.14973668783685	7.60714116406853	0.414313202187666	0.133171200029103	0.488237008287004
Merged-chr17-25016393-4	chr17	25015887	25016887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	301.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	7.797992854337	7.95058006071558	7.77967195473053	7.58846461214994	8.03151318254744	7.79364146075087	-0.0347272749956766	0.884514724865689	0.973510728214101
Merged-chr16-87698023-3	chr16	87697549	87698549	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-905.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.43188185016364	3.18617281796821	3.45925386409226	3.32240074884938	3.27016568670656	3.25296443063402	-0.313186574081511	0.611815861650111	0.886342611187799
Merged-chr13-54575151-4	chr13	54574629	54575629	+	851.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019968, exon 1 of 4)	exon (NM_019968, exon 1 of 4)	116.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	5.02587893685087	5.39458807978673	5.5898890061293	5.28156625711191	4.86001519811999	5.01993998328692	-0.585299032224771	0.140940002695217	0.501575456321953
Merged-chr13-54590864-4	chr13	54590356	54591356	+	910.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178605)	promoter-TSS (NM_178605)	625.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	7.39890051741648	7.53392224245461	7.31908868911806	7.25366220019243	7.57166918898716	7.46264679140375	0.0213980894182499	0.92884866927544	0.983906798062857
Merged-chr4-16088542-4	chr4	16088081	16089081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74693.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	6.49999126618669	6.42816104083492	6.44176415854733	6.44148235655593	6.83548531337239	6.51956371704008	0.261781214255078	0.345053262076104	0.73358863076367
Merged-chr7-121072612-4	chr7	121072110	121073110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	1920.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	6.27050701604903	6.66725560443371	6.66405815156093	6.38256679336609	6.41213831999315	6.59479747810155	-0.133112122849785	0.640486240699583	0.898483031109382
Merged-chr19-59042442-2	chr19	59041942	59042942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	B4|SINE|B4	33627.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	5.39738077777109	5.83184805837248	5.01826700465602	5.33362593650951	5.61333399505465	5.08597801964713	-0.18938699813167	0.649994697908397	0.902467704262052
Merged-chr15-77538111-4	chr15	77537609	77538609	+	770.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-4794.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	4.07181798875128	4.27215466148748	4.56954594911833	4.47200148229754	4.22355034556687	4.63473586935551	0.34952568278175	0.466633563316605	0.817586753758551
Merged-chr2-71056601-2	chr2	71056101	71057101	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	857.0	NM_001165980	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	5.11582042438189	5.68546326269853	5.23272372871534	5.12253712330341	5.31391994296717	5.3910353900727	-0.197204565166269	0.605817547081948	0.883652954766237
Merged-chr2-166009664-3	chr2	166009076	166010076	+	874.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	16939.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.9169698042804	5.15129758826597	5.31746213244403	4.94795478268948	4.59728625188723	4.93219576661693	-0.66422815023232	0.0984827885735102	0.418427687285513
Merged-chr14-52307454-4	chr14	52306954	52307954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2330.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	3.88961955864493	3.84260241795955	4.23320702976601	4.0484776778349	3.71001651156712	4.21581185018996	0.0222919284557493	0.96706970320543	0.99246334888587
Merged-chr2-150826171-2	chr2	150825671	150826671	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 15 of 19)	intron (NM_153781, intron 15 of 19)	16399.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.57401383482868	3.58105433587705	4.0008307196474	3.49390025370596	3.30512796285489	3.37087819735569	-1.21089569260347	0.0454005028375094	0.268995157082744
Merged-chr2-164497465-4	chr2	164496986	164497986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133779)	promoter-TSS (NM_133779)	-39.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	6.10048459468975	6.12358816038014	6.19289664612398	6.10395220340318	6.29075870088825	5.93721063324847	-0.00864763887527022	0.976444492678646	0.994723308989508
Merged-chr13-48966148-4	chr13	48965656	48966656	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	1672.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	6.85835647844014	7.16167355121379	7.15031359143364	7.28715410669794	7.63853817611056	7.36955134237796	0.573447568709887	0.0249697880112854	0.186874424221059
Merged-chr4-43381061-1	chr4	43380561	43381561	+	872.0	f1_balb.idr	promoter-TSS (NM_001037709)	promoter-TSS (NM_001037709)	-921.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	5.44729842636369	5.45223254204672	5.33308178014763	4.7140711861675	4.78557105983858	4.88630682156585	-1.31718887751259	0.000315875220074946	0.00727156350473626
Merged-chr1-80627014-4	chr1	80626525	80627525	+	814.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	38327.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.79503416629983	4.10417672230591	3.98223494278742	3.97694482011028	3.43889829763364	4.00376855577367	-0.433606840154769	0.452389457028484	0.809392606283486
Merged-chr7-73550494-1	chr7	73549994	73550994	+	577.0	f0_c57.idr	intron (NR_037569, intron 3 of 4)	intron (NR_037569, intron 3 of 4)	7901.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.1327617215258	4.08317453153473	4.75451150089587	4.66576043628834	4.34383717178315	4.63865124286604	0.514915111307808	0.302566727698768	0.699228182013852
Merged-chr9-78442751-2	chr9	78442251	78443251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173386, exon 1 of 5)	exon (NM_173386, exon 1 of 5)	486.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	6.63970001088696	6.76499075443676	6.45588820410117	6.90483021216962	6.7737180429195	6.65882836108175	0.237446157092951	0.370200082479431	0.754675955188977
Merged-chr15-36283221-4	chr15	36282703	36283703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013923)	promoter-TSS (NM_013923)	-56.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	6.84945679095108	7.04900533317494	7.05493671759786	6.64872006665954	6.61000815968771	6.85810101747746	-0.440031490766848	0.0856349966426958	0.387509071168449
Merged-chr1-184536640-4	chr1	184536143	184537143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21048.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.55964358568939	7.88516857246811	7.2487086465593	7.33237429248901	7.56753144250294	7.34180923488897	-0.259356407286034	0.334977170104494	0.725339338581532
Merged-chr16-4541960-4	chr16	4541455	4542455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17765.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	5.08060238168092	4.93192885107265	4.87432243221293	5.0469064510852	5.06461071927205	4.94013099615463	0.11340748169582	0.761527768937399	0.941258867861232
Merged-chr1-87036421-2	chr1	87035921	87036921	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	53507.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	5.71728521773548	6.0526329669873	6.28311400399512	5.57995992434095	6.0538770746401	5.75330672438038	-0.368216218404635	0.288625548749898	0.686111323611734
Merged-chr17-34289903-2	chr17	34289392	34290392	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2121.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.59896850661653	2.53087361372702	2.50216222473812	2.95620851603028	3.06833541513911	2.84665759244749	2.36823722812117	0.00348906450114352	0.0470760627551727
Merged-chr19-45046791-6	chr19	45046245	45047245	+	815.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178013)	promoter-TSS (NM_001178013)	-831.0	NM_001362380	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	4.18844469404593	3.74415717173354	3.92745413203903	3.83279000945052	3.45840439698043	4.08967383922715	-0.479255411773575	0.413020102984336	0.78473253708546
Merged-chr8-22166910-2	chr8	22166410	22167410	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-475.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	4.2016475718147	4.09810182816853	4.05395998231127	4.11981629777627	3.86410856752842	3.97467169201906	-0.396141685860714	0.42059103982223	0.789800880993226
Merged-chr9-40781766-1	chr9	40781266	40782266	+	1000.0	f1_balb.idr	intron (NM_133733, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-19507.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.4215067576924	7.50327048531237	7.07153861332477	7.10904638585463	7.52600327128809	7.69527157154792	0.16453408177376	0.553332128981126	0.86224512118178
Merged-chr3-68638462-2	chr3	68637962	68638962	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52182.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	2.57760827623273	2.90449920064517	2.64731992075081	2.64256176815689	2.50186527707145	2.78351473572497	-0.4224608348269	0.590134688513859	1
Merged-chr5-66147538-4	chr5	66147035	66148035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B3A|SINE|B2	3443.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.25066747012325	4.90854566381366	5.06013875206422	5.05411845251912	4.95588729810887	4.78707193980025	-0.298016661803318	0.440986905473605	0.802167900847268
Merged-chr6-87806234-4	chr6	87805735	87806735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	3522.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	6.98788278721164	6.42874603557219	6.70890886171414	7.06910081076539	6.93264389096275	6.73555805084219	0.298923930098148	0.299310929683052	0.696061035133241
Merged-chr13-91132998-3	chr13	91132479	91133479	+	760.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	91008.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	3.72802852286207	3.8307435654098	3.70241835324456	3.75077362644194	3.66230155055194	3.55318207424949	-0.325123783879616	0.54942156191175	0.860273914502926
Merged-chr15-82354358-4	chr15	82353848	82354848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025987)	promoter-TSS (NM_025987)	-57.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	8.01680333665166	8.52823914416826	8.01281953562273	7.96269186803987	8.21215002517702	7.83668553382273	-0.277074805411353	0.287590159679961	0.684941523503741
Merged-chr16-91357796-2	chr16	91357296	91358296	+	786.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.42292432230673	3.25186282394362	3.65359554700454	3.36548628514652	3.15998319008938	3.4158812328648	-0.51730342503503	0.407969549140018	0.781926100186554
Merged-chr11-98217138-4	chr11	98216623	98217623	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	13818.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	5.66435175834317	5.90268158382349	5.9764863601923	5.6482717846839	6.23129079436023	6.14437210712915	0.325912882994283	0.332052594835823	0.723340375189129
Merged-chr2-79966906-4	chr2	79966424	79967424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-58525.0	NM_001009978	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	5.71359633371764	5.74380947794775	5.68817696460243	5.59332427519537	5.72894664145553	5.61385724225422	-0.11994746720273	0.700103138967706	0.92088373406885
Merged-chr9-44199786-3	chr9	44199289	44200289	+	866.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	34257.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.1106441578128	4.81523092171569	5.14843804843863	4.59421113771976	4.70731769924055	4.9131217468101	-0.646664973499101	0.108432284306606	0.43988267332573
Merged-chr18-38423207-2	chr18	38422707	38423707	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	B2_Mm1a|SINE|B2	4300.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.97000943070901	3.65983472342432	3.67784425212812	3.75903675868649	3.67211967948696	4.17669748290143	0.309774905095796	0.583999736959822	0.874371294853541
Merged-chr4-134495240-2	chr4	134494666	134495666	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	2.47207741522865	2.54094775926958	2.4390771768817	2.62196738489401	2.54965721287538	2.94310770890239	1.26623836348779	0.116346307109517	1
Merged-chr2-27368070-2	chr2	27367570	27368570	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	59538.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.29407831607095	4.84658270593992	4.3651528912749	4.38636877648487	4.00771580968074	4.34347768295399	-0.731279947533624	0.139917911251664	0.499868788359785
Merged-chr10-78471124-4	chr10	78470603	78471603	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6155.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	4.71836591648936	4.79216269330912	4.53619122886441	4.17550837279403	4.19841005446735	4.24882429770252	-1.28544673324075	0.00367395481210772	0.0488423248402152
Merged-chr15-101081254-3	chr15	101080755	101081755	+	680.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26856.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	3.68480295142295	3.53215090575409	4.10504601366756	3.34682042583309	3.22222334575689	4.17146264831064	-0.377975091136283	0.723133106684459	0.928989158354973
Merged-chr9-118664662-5	chr9	118664057	118665057	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-47135.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.55692487652247	7.25438474221068	7.38501823365777	7.40932408054931	7.63591766638566	7.49434536035987	0.16791270230045	0.481864056034907	0.825208669475694
Merged-chr2-59975915-2	chr2	59975415	59976415	+	751.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	5.35669825258403	5.59426663987355	5.3344040058281	4.97509143911954	5.39937389077062	4.94141737959213	-0.594174923213371	0.121810049029949	0.466849055144701
Merged-chr15-103273973-2	chr15	103273473	103274473	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019817, intron 1 of 8)	B1_Mur2|SINE|Alu	1085.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	5.11700322979857	5.11443058146793	4.98217640060834	5.55617310423046	5.65699936229392	5.0493625590114	0.767001925605403	0.0433289049768994	0.261462870789604
Merged-chr17-29492466-3	chr17	29491915	29492915	+	951.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1370.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	7.1745994417734	7.18678983312114	7.19547171063453	7.74823170614335	7.86983506600081	7.69971340481806	0.86915990100561	9.69382754672878e-05	0.00276045175396375
Merged-chr7-139273533-4	chr7	139273025	139274025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25043.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.09741716229514	3.81725422626093	4.33664829876249	4.39235934710943	4.12365457135014	4.44404672774192	0.634065112297761	0.208158837849699	0.599041414336639
Merged-chr17-78373399-4	chr17	78372912	78373912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44740.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	6.13783230763238	5.79104903340296	6.22220642199343	5.97043737412117	5.95047659727656	5.78845529743738	-0.253594045998886	0.418929105109223	0.788773176248009
Merged-chr12-100116169-4	chr12	100115658	100116658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 5 of 9)	intron (NM_008947, intron 5 of 9)	3827.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.27483232272003	6.05300037973924	6.19471743333856	5.91418135633886	6.2397382903161	6.37051072350498	0.0150509877074934	0.960175965509723	0.990335445597503
Merged-chr3-144719706-2	chr3	144719206	144720206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	CpG	629.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	9.14575052306814	8.82281213897461	8.5632509662601	8.86037344361888	8.7472148579388	8.65977134447169	-0.154166489171642	0.515323981738693	0.843544969163385
Merged-chr10-7050032-3	chr10	7049540	7050540	+	918.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26855.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.6736877009451	4.19532379371238	4.43535365956368	3.70317034140097	3.55458125884569	3.73659290408391	-2.46265020840338	7.41382427181232e-06	0.000310462752898319
Merged-chr14-27345610-2	chr14	27345110	27346110	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	9573.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.88554783595472	3.96530425420714	4.18613169300241	4.35769556903871	4.05089762731784	4.20908351201365	0.568321533724145	0.248544624265522	0.645658488345029
Merged-chr11-116619451-6	chr11	116618961	116619961	+	834.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	4791.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.0528676944865	6.37999630155887	6.27194926126107	6.21560479098386	6.12434506742238	5.98480096568969	-0.212909525893673	0.468679349674949	0.818694631884688
Merged-chr3-96162275-2	chr3	96161775	96162775	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_181409, intron 1 of 16)	intron (NM_181409, intron 1 of 16)	305.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	3.29735518473737	3.12215177465729	3.7442654034943	3.1489702722116	3.57004421183597	3.05348175673612	-0.496369840617322	0.494506406344029	0.83205712729665
Merged-chr4-12490633-3	chr4	12490129	12491129	+	823.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-318614.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.40112289531854	3.4956077900865	3.61989166888042	3.06149429672176	2.90576747445311	3.14851989661078	-2.08753176750288	0.00204459352808533	0.031516587307322
Merged-chr10-95680472-7	chr10	95679988	95680988	+	747.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-116342.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	4.77419829429109	4.599668696821	4.26746312856098	4.26788277114108	4.45204569113603	4.23902951206766	-0.614024226705783	0.187747616783287	0.572993826925753
Merged-chr3-108718014-1	chr3	108717514	108718514	+	593.0	f0_balb.idr	intron (NM_029522, intron 1 of 14)	ORR1A3|LTR|ERVL-MaLR	4285.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	2.83011799842026	2.63447360719511	2.82964509433295	2.79024645275171	2.81847909136428	2.58313448113094	-0.139325833781546	0.853906794945891	1
Merged-chr10-37211342-2	chr10	37210842	37211842	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-72416.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.04055702504971	3.89737374455149	4.01565549543849	3.88217841458979	4.06778042361082	4.08399899271204	0.0902966176191487	0.855328880567856	0.966144526071856
Merged-chr3-146781362-4	chr3	146780862	146781862	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164200)	promoter-TSS (NM_001164200)	54.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	6.20837667056953	6.22248068381311	6.08170636931696	6.15146586229309	6.1717631114108	5.82313231073238	-0.180642447181621	0.542166560827124	0.857034750433211
Merged-chr13-44731816-2	chr13	44731316	44732316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001205044, exon 2 of 19)	5' UTR (NM_001205044, exon 2 of 19)	545.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	6.72683330122792	7.04703962826172	6.80200255657774	7.10159946666868	7.50742177255826	6.89148064321081	0.50863186113232	0.0760553178977704	0.363034126413359
Merged-chr9-96393321-4	chr9	96392830	96393830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28899.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.0054878536582	7.01283980397249	7.09946151328003	7.40417391130596	7.63583227979072	7.30266112763898	0.635724977369334	0.00842103376773805	0.0893032633769439
Merged-chr4-133805303-5	chr4	133804818	133805818	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-51707.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	8.45576938204728	8.46933833316108	8.10598457956512	8.27683683733687	8.63927876659536	8.01940731278991	-0.018129730377322	0.944226982802814	0.98760473870349
Merged-chr13-5870974-4	chr13	5870475	5871475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011803)	TTS (NM_011803)	9486.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.4247319084455	6.22874097125696	6.00001224737472	5.68615449479127	5.72173136609103	5.51964861725205	-1.02361221103362	0.00114758310803985	0.0200306422353055
Merged-chr11-54879102-3	chr11	54878575	54879575	+	833.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	12692.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	5.42839461257876	5.30188654009934	5.33444824994893	5.86112724658214	6.09748169103231	5.7508877021562	1.04473771245924	0.00134146056723361	0.0226732177286967
Merged-chr12-12322159-2	chr12	12321659	12322659	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MTB_Mm|LTR|ERVL-MaLR	60020.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.49470949179051	2.72438717999123	2.74168887529455	2.45943265395745	2.44992479653501	2.56918988761659	-0.977208726780174	0.218807148193234	1
Merged-chr1-65171554-2	chr1	65171054	65172054	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010497, intron 2 of 8)	intron (NM_010497, intron 2 of 8)	7588.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	3.25844828012144	3.08647514090667	3.22509536493587	3.21209716836911	3.08113472178559	3.5097032811491	0.332347725194486	0.60917558262629	0.885060185419642
Merged-chr18-12121413-4	chr18	12120908	12121908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289666, exon 1 of 15)	exon (NM_001289666, exon 1 of 15)	129.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	5.65459766007045	5.86484841444217	5.98914024935489	5.95742753590607	5.6304254545894	5.78991974396378	-0.0739977568327169	0.817777480075101	0.956835450074313
Merged-chr1-180226624-3	chr1	180226146	180227146	+	705.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011183)	TTS (NM_011183)	19304.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.28877898219357	3.45802076868758	3.37704668128554	3.30435423377059	3.33510329949996	3.3357690192127	-0.20458595852166	0.733037910229775	0.931985446585439
Merged-chr5-137783423-2	chr5	137782923	137783923	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 1 of 3)	intron (NM_144913, intron 1 of 3)	3278.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	2.35603376183523	2.35562793848121	2.65774392817801	2.41706835959043	2.21798975828863	2.42357284752696	-0.673118665975509	0.427758699372702	1
Merged-chr2-178498102-3	chr2	178497613	178498613	+	782.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67598.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	3.3761565869305	3.13771043537768	3.21300542695117	3.26468468760322	2.88512280178965	2.98074910566979	-0.842120947158425	0.220871647831144	0.615590183533568
Merged-chr13-113508501-4	chr13	113508020	113509020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5676.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.79014030327347	7.32717962533586	7.34679821055343	7.59272453809523	7.65698672488142	7.2998278256489	0.0288288236040952	0.913458480648577	0.980672901849001
Merged-chr5-114668217-2	chr5	114667716	114668716	+	637.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9795.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.13347884405509	3.4736472723047	3.16127128622218	3.24832697248774	3.02716642840855	3.29210804342801	-0.335844185037856	0.61045929704918	0.885610872251694
Merged-chr7-34387262-2	chr7	34386762	34387762	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	2443.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	3.39263823724583	3.47347868775325	3.286587876505	3.56090961232122	3.87329667595043	3.64720359431478	1.12864558547376	0.0565821568777084	0.306692051805691
Merged-chr2-131235711-2	chr2	131235211	131236211	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1648.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	5.12413592326624	5.23150462070739	5.27062976691901	4.68580970411914	5.0245445915396	4.9339007082298	-0.664372798315238	0.0812496493131198	0.377143156371253
Merged-chr19-21472551-4	chr19	21472056	21473056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010266, exon 1 of 14)	5' UTR (NM_010266, exon 1 of 14)	105.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.84295063618533	3.23229913504277	3.40710493859816	2.84449894003284	2.46552894067194	2.80047824285198	-2.43915381725901	0.00531343179177827	0.0638063120342929
Merged-chr11-51855641-4	chr11	51855150	51856150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	1831.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.73228340260604	5.81109226654299	6.23760269492141	6.0298945775498	5.75618410860344	5.74296633249273	-0.146872811858164	0.65829585150763	0.904992195604343
Merged-chr6-13691871-4	chr6	13691387	13692387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	5.38163046468579	5.50120814557451	5.31789117638431	5.18278432467367	5.01857732937153	5.35058512301458	-0.458856454781359	0.194349294239975	0.581601009714793
Merged-chr14-47648407-4	chr14	47647909	47648909	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-902.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	5.97692549280002	6.34648294361188	6.27053934751781	5.95481861238706	6.16105462184366	5.7810739270915	-0.373244794349928	0.233841319315133	0.630121355137759
Merged-chr5-125348246-4	chr5	125347753	125348753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7159.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.04167569402629	5.803525222951	5.72849841758698	5.40120508762224	5.2461933364838	5.42213829710708	-0.972489665749687	0.00309461572686276	0.0431101264692444
Merged-chr9-44605208-7	chr9	44604713	44605713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357703, exon 1 of 14)	intron (NM_001110826, intron 1 of 13)	321.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	8.69930121747464	9.02595021680556	8.73535309451998	8.7069510599672	8.84798738659366	8.99233164483734	0.0293402195350775	0.893475569929022	0.975237866709772
Merged-chr4-129461477-4	chr4	129460971	129461971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133889)	promoter-TSS (NM_133889)	-208.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	6.96378030134385	6.64938258124569	6.2601087478566	6.71798387659825	6.6008098022052	6.53989531876973	-0.0727694984772483	0.809198995908458	0.954721853010197
Merged-chr17-26538741-1	chr17	26538241	26539241	+	843.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-22771.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.78212871240614	5.40998159969276	5.27060535305659	5.38339748319208	4.94817716376434	5.12870262493263	-0.695228758142344	0.0691648921302219	0.344038279792654
Merged-chr13-112464014-4	chr13	112463519	112464519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010560)	promoter-TSS (NM_010560)	-51.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	7.72833410634985	7.56449610727852	7.41164001860466	7.75510366257599	7.57838721964676	7.16842870320425	-0.0689394008645587	0.793889507342675	0.950531747588938
Merged-chr5-76905023-4	chr5	76904530	76905530	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173765, intron 1 of 15)	RSINE1|SINE|B4	484.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	6.84142222893396	7.5278642058842	6.95162284860293	7.08363979323281	7.41116614378187	6.76176372946369	-0.0436131223799277	0.891968172473928	0.974942585822634
Merged-chr7-30650877-1	chr7	30650377	30651377	+	721.0	f1_balb.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-649.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	6.43548218541962	6.40283296100771	6.46482564291609	6.4860916107722	6.54099133698638	6.64294282021964	0.19694968165294	0.450900497559007	0.808676120290761
Merged-chr11-8545979-4	chr11	8545478	8546478	+	885.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 7 of 30)	intron (NM_001083587, intron 7 of 30)	118557.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.41964137784322	2.38749065907943	2.38299147313403	2.52140269671465	2.57802853303639	2.88936268813866	1.61675479746831	0.0503263445492052	1
Merged-chr12-80435844-3	chr12	80435378	80436378	+	915.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	intron (NM_177267, intron 1 of 8)	723.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	7.06734576704993	7.16144752913144	7.31175823522989	7.38518507292714	7.23086168805185	7.30251202276238	0.190867385656238	0.420245320466242	0.789521469804967
Merged-chr17-17583858-1	chr17	17583358	17584358	+	901.0	f1_balb.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	40631.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.88324034023223	4.9928926850876	5.19489767818735	5.74807290235212	5.51080493486483	5.12116187582272	0.948631498025618	0.0129349000820116	0.120511383498379
Merged-chr9-114844884-2	chr9	114844384	114845384	+	966.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-732.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	6.98474364051242	7.14219090445627	6.5647138983264	6.17184894082916	5.91523537579239	5.64049945923523	-1.61259711499536	5.83527029171574e-07	3.36713710425161e-05
Merged-chr16-8739750-4	chr16	8739267	8740267	+	814.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	3.72381111678359	3.87332260683873	4.29439216787128	3.95979528689671	3.7601473925066	3.53836288296408	-0.655265120101223	0.259125162339858	0.656775610221905
Merged-chr17-63422110-4	chr17	63421602	63422602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	78478.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	4.4844051349014	4.68312196674482	4.4830792874241	4.63227430101631	4.57658439253778	4.46277650685214	0.0104042159444636	0.980404866580054	0.995512982807197
Merged-chr16-35855876-1	chr16	35855376	35856376	+	542.0	f1_c57bl6.idr	intron (NM_001039530, intron 6 of 16)	ID_B1|SINE|B4	15506.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	2.93493908556118	3.07588395302229	2.8848230360071	3.00279441687686	2.77827414495082	3.07818416559376	-0.0823367656618224	0.90663126159815	0.978787664113116
Merged-chr10-80056576-2	chr10	80056076	80057076	+	774.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008162)	TTS (NM_008162)	2557.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	3.24145584869645	3.21505415221307	3.4856747795447	3.33662643816802	3.0967982175189	3.3435040779992	-0.221457674033062	0.725843465808412	0.929724409589692
Merged-chr6-120823304-2	chr6	120822804	120823804	+	865.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-606.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	5.69087094949541	5.87070754686602	6.21324837333279	5.87986317393927	5.78419052648908	5.79113710271403	-0.198692703766091	0.538733587866183	0.855475830625121
Merged-chr4-97767080-5	chr4	97766569	97767569	+	862.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-10557.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.46428682721448	4.24376117289423	4.37393102434611	4.23144393172571	4.31245567998067	4.30922634922486	-0.206218473245817	0.646695373108702	0.901057094151423
Merged-chr6-72869506-2	chr6	72869006	72870006	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	29786.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	4.97372264042011	5.16567174895371	5.08007490336077	4.99497857383101	5.25211187182347	5.47805992314274	0.357178346736252	0.34174905547651	0.730980941894702
Merged-chr4-126251893-4	chr4	126251392	126252392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	4427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	6.38757327195948	6.3007810980403	6.30257282472646	6.48824735911823	6.72064680930486	6.63359428082999	0.465964610347234	0.0807586271362814	0.376005826953036
Merged-chr6-30026865-4	chr6	30026346	30027346	+	809.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-21142.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	3.67600372579032	3.63342148748219	4.07151924665141	3.88673670441919	3.34906047973024	3.60750720128796	-0.562165988474905	0.352867425152629	0.740346269752136
Merged-chr4-43476910-2	chr4	43476434	43477434	+	892.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6775.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	3.969092187031	3.84353195935794	4.36625564623673	4.0315955375772	3.89659882952761	4.6161948594038	0.388605876953038	0.485874307511075	0.827573679263522
Merged-chr2-181591896-2	chr2	181591396	181592396	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164597, intron 1 of 16)	intron (NM_001164597, intron 1 of 16)	565.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	4.30074548384008	4.09430878676504	4.25489379725874	4.28287753284627	4.09439482759718	4.23246095597101	-0.0452553669831472	0.922893937532175	0.982621045978137
Merged-chr9-22123186-1	chr9	22122686	22123686	+	546.0	f1_balb.idr	Intergenic	Intergenic	-5991.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	3.54354302382611	3.52998660105519	3.68562468498515	3.45191921885279	3.53697636747672	3.54818630166156	-0.254493563453948	0.651909603793414	0.902896807825606
Merged-chr8-90822517-4	chr8	90822014	90823014	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6321.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.11632436929393	4.11067456442512	4.18600485203215	4.28908111287218	4.48325573110665	4.70269254443855	0.95800637235924	0.0379520377974286	0.241017691120803
Merged-chr9-123940247-4	chr9	123939745	123940745	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28447.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.59727073749835	5.29478298187076	5.62170944779965	5.2336556799584	5.1328827804896	5.21728146084506	-0.623404630015845	0.0754632088296227	0.361722603853635
Merged-chr17-33092624-4	chr17	33092090	33093090	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024950, intron 1 of 3)	intron (NM_001024950, intron 1 of 3)	3223.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	5.14904667791855	5.43581292907435	5.04437972061353	4.96186029198957	4.79892457811651	5.17702479064509	-0.531115613336612	0.170099806693041	0.547374602613428
Merged-chr18-75174485-3	chr18	75173996	75174996	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	122821.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.17593652649436	3.11475788012285	3.10510558749517	2.81248526836511	2.78486488011953	3.06139169070764	-1.19611973329405	0.0871644000029615	0.391397131089794
Merged-chr13-42103801-4	chr13	42103321	42104321	+	964.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51800.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	6.9209388259887	6.88034374518137	6.09508236790756	6.86868994936531	7.06091088246778	6.60457783951749	0.259203418918627	0.439012816756228	0.800937323779458
Merged-chr9-82876749-2	chr9	82876249	82877249	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081216, exon 37 of 40)	exon (NM_001081216, exon 37 of 40)	46943.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	2.41657895675366	2.74038523881337	2.53492660479582	2.73425147869423	2.45679786031778	2.85790984991225	0.639338833056269	0.436455875346664	1
Merged-chr11-121735205-4	chr11	121734701	121735701	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32774.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.29217407787121	6.61467785156616	6.78038829076855	6.61349428277266	6.76782368622747	6.56949454523552	0.139974285632909	0.620176411171244	0.890026802452616
Merged-chr8-70302551-4	chr8	70302075	70303075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021538)	promoter-TSS (NM_021538)	-123.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	7.4674778895656	7.75497908901774	7.64848074330495	7.79811807641292	7.84926572407598	7.43446642632758	0.1236345000684	0.615260958954802	0.887866671887744
Merged-chr14-56812904-4	chr14	56812405	56813405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	916.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	7.64117444642115	8.03933241270058	7.64530913396611	7.9919318090728	7.93169250405124	7.82642078377223	0.178616308566978	0.455834706114115	0.811163679278426
Merged-chr15-88743564-4	chr15	88743051	88744051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-8160.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	4.47664408445561	4.55461976885233	4.66111814609216	4.41885792851855	4.48746056679183	4.8697059496594	0.0828511632634877	0.849523243937939	0.964686793473289
Merged-chr14-20724181-2	chr14	20723681	20724681	+	713.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252081)	TTS (NM_001252081)	10381.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	2.66121040962511	2.84021605433644	2.80274128347398	2.77722691093255	2.58147378786278	3.04933622487576	0.207287752270984	0.784975224995304	0.947850129107983
Merged-chr6-50685229-4	chr6	50684757	50685757	+	810.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30864.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	2.97827753793427	3.10037798508942	3.08735707275872	3.03825774982018	2.98437570886162	3.15900457540272	0.0091982720484178	0.988849187650748	0.997430342931925
Merged-chr4-140700472-4	chr4	140699995	140700995	+	840.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-978.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	6.34276539544275	6.31564162718386	5.8780192752701	6.24770811273407	6.38125291167739	5.96639068689908	0.0216954616926084	0.945212410931492	0.987875414328125
Merged-chr9-60826899-3	chr9	60826401	60827401	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	32459.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	4.23495338642602	3.93182601277608	3.84526647488014	3.59951162294793	3.36019388507167	3.59086988364326	-1.72565591873254	0.00265062431574486	0.0383170861821575
Merged-chr14-17414439-4	chr14	17413939	17414939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246521.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.28126425148111	6.61640215497326	6.22463352652865	6.12488631039127	6.28197459658327	6.79445489981266	0.051739904211512	0.873698982443793	0.970440430875665
Merged-chr7-16310200-4	chr7	16309705	16310705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	CpG	622.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	7.58164137551917	7.54826628749262	7.19935762684799	7.61096549393154	7.59153311529744	7.61514329105396	0.206335563500845	0.385778377866328	0.766673368494625
Merged-chr5-149241186-4	chr5	149240733	149241733	+	957.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23771.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	3.75821500335078	4.15672960144981	4.37374581253323	4.46719198540134	4.56676281088246	4.60128958001458	1.14809271944698	0.0209851249720478	0.166663193535759
Merged-chr4-147423728-2	chr4	147423228	147424228	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B4A|SINE|B4	-129549.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.87775972428938	4.16925503200946	4.39077114940852	3.87043252934663	3.8885489778378	4.41742917993605	-0.230597144531969	0.670625447030803	0.910053903576255
Merged-chr17-72836501-4	chr17	72835974	72836974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-154.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	8.37276643681582	8.80653594085783	8.40373033356141	8.39779529874181	8.72000714175419	8.28832097549978	-0.0825787103741469	0.739544692978023	0.934245371298156
Merged-chr1-79669783-3	chr1	79669266	79670266	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	2206.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	2.70144211640144	2.65850792315519	2.85022915007847	2.83760796039955	2.55158672123723	2.61190314531165	-0.340721722948393	0.654326544646365	1
Merged-chr3-106556713-4	chr3	106556258	106557258	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	Lx3A|LINE|L1	-8956.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.13542849149336	6.29475073759194	6.4517661267962	6.14818376963866	6.34764209646784	6.64159150601189	0.154132474676265	0.605863353403954	0.883657807362598
Merged-chr11-23821126-4	chr11	23820634	23821634	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50164.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.64779873788178	6.54105303043912	6.39365704984893	6.38402434722705	6.58797046080932	6.45330933033638	-0.0894449299352333	0.740557576286719	0.934580867046263
Merged-chr10-78429417-3	chr10	78428904	78429904	+	935.177795	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3734.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	3.2276831183899	3.20669846655194	3.26423635167167	3.62983720253598	3.33682438933053	3.45077593227944	0.962731733268019	0.114714507807813	0.452186398382538
Merged-chr2-168229527-8	chr2	168229045	168230045	+	949.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	834.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	7.97485086488306	8.38998899492623	7.80161297478653	7.99120936749201	8.22811673747271	7.92477229687611	-0.0400517711553906	0.876498629547076	0.971334744650699
Merged-chr3-32401346-4	chr3	32400850	32401850	+	864.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34801.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	5.49253628072863	5.36533276169279	5.54606106656243	5.64166997298208	5.61924287675397	5.68923103604353	0.345267691235822	0.282079596469305	0.679952462789128
Merged-chr11-4135227-4	chr11	4134753	4135753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027859)	promoter-TSS (NM_027859)	93.0	NM_027859	71673.0	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	6.43834530182947	6.31076278038862	6.73910949997608	6.37665485235225	6.0443664498341	6.25261258768294	-0.447966141291366	0.131760794254324	0.485405199476187
Merged-chr19-40590634-2	chr19	40590134	40591134	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2171.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	3.58412046612322	3.18451192097592	3.64623103950134	3.49137260995537	3.55989596637656	3.50670357310979	0.137216646045695	0.822287737804754	0.958041123079214
Merged-chr2-132106213-2	chr2	132105713	132106713	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	38895.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.79362933237762	4.61386571388727	4.31339697129327	4.90287512944005	4.77444765039653	4.52740940045117	0.351750973710888	0.427890309919929	0.79474992357457
Merged-chr12-34714400-3	chr12	34713908	34714908	+	955.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-185519.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.09299303793566	6.52517500399892	6.19890955474022	6.27817672059309	6.41130525570849	6.4538566932872	0.146884121419535	0.617032936743772	0.888686351765977
Merged-chr6-124809653-4	chr6	124809115	124810115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009415)	TTS (NM_009415)	697.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	6.73644866848079	6.89323450992701	7.00188794496432	6.98136867656668	7.08439732099917	6.93751860802738	0.200670059737138	0.419794022632019	0.789288680109782
Merged-chr1-151816313-2	chr1	151815798	151816798	+	641.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	60924.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	4.88902658654211	4.84973758847848	4.71659628237484	4.83435463315148	4.89524729657937	4.97152265304524	0.160895733022038	0.676252860762087	0.912446254005931
Merged-chr16-94544773-5	chr16	94544291	94545291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18162.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	6.44706276606776	6.19153809320184	5.70951272219616	6.76694107912003	6.432371899601	6.3978963821594	0.619919223260348	0.0637753153833915	0.329042216404573
Merged-chr9-64771852-2	chr9	64771352	64772352	+	997.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-34096.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.22830519496033	5.21835232209328	4.90106195397107	4.75697548340319	4.90894039262589	4.44395006574817	-0.871862163642613	0.0383551430600502	0.242456487407176
Merged-chr12-84755645-4	chr12	84755307	84756307	+	783.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	17305.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	2.88276278671157	2.74790874578785	2.94196401374173	2.75591394877585	2.84748649244077	2.70901261975219	-0.413121836713201	0.568427155870986	0.868549528189122
Merged-chr8-69923006-1	chr8	69922506	69923506	+	1000.0	f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-20448.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	3.16292130399044	3.05161014899011	3.1675966951512	3.53357440344254	3.46777448305857	3.47027873893893	1.4970162229982	0.0160605342969777	0.139190182041758
Merged-chr14-16364201-2	chr14	16363701	16364701	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	6.05530964482918	6.19928957424288	6.11198314435029	5.76499802123797	5.97357283148527	5.56146859471367	-0.577069512341242	0.0652563801111124	0.333024389037881
Merged-chr3-65976455-2	chr3	65975924	65976924	+	900.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-18175.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.68072933199529	4.83917346846578	4.71800828431889	4.73652906656125	4.63093661148601	4.78377589146708	-0.0876338327051615	0.826444518190414	0.959132530412348
Merged-chr15-12824753-4	chr15	12824248	12825248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029998)	promoter-TSS (NM_029998)	-67.0	NM_026799	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	6.60030166582179	6.81830947542462	6.4850964637949	6.35510223883505	6.69492632150957	6.5800561854531	-0.149951832211437	0.591144614248498	0.877415484694165
Merged-chr17-26606594-2	chr17	26606046	26607046	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	45034.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.97342196736208	6.02845055819376	5.48056452093198	4.81866236676283	4.64463627738826	4.64412606329378	-2.36146050705956	1.200921244481e-09	1.30622555438922e-07
Merged-chr2-130564244-2	chr2	130563771	130564771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	514.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	5.93105870065181	6.19190928765294	6.03659276888172	5.67605089093531	5.39687334825995	5.7132079596498	-0.840944307501471	0.00820763821656409	0.0876239621149429
Merged-chr17-71206259-4	chr17	71205753	71206753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	1599.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.392406280594	5.03641969968114	4.64762165130136	5.17746967848953	5.41379001782893	5.01188393857723	0.298789464041532	0.484031635297867	0.82665199605554
Merged-chr8-10711635-2	chr8	10711135	10712135	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170819.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.58422118357492	4.68912674445772	4.8469799340185	4.22663935313421	3.94123736635594	4.28279182886259	-1.46576283865943	0.00153510041866503	0.0251392709380594
Merged-chr15-69079923-1	chr15	69079423	69080423	+	653.0	f1_c57bl6.idr	intron (NM_010158, intron 7 of 8)	intron (NM_010158, intron 7 of 8)	151503.0	NM_010158	13992.0	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	2.87778105954636	2.80056502847135	2.72202240163258	2.8913896354992	2.95958567402132	3.31936307938745	1.23498611880067	0.0915234958920169	0.402786642311469
Merged-chr7-64349423-2	chr7	64348923	64349923	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177893, exon 12 of 14)	exon (NM_177893, exon 12 of 14)	24672.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	3.66720433745268	3.91485775460784	4.09614283785245	3.95870707628522	3.67569718311859	3.83370413173114	-0.229803600238399	0.671439323920649	0.910528012497292
Merged-chr13-112363349-4	chr13	112362824	112363824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 8 of 11)	intron (NM_001168403, intron 8 of 11)	74806.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.98294813435503	4.91020284390837	4.71420157712306	4.32892420651251	4.0028225179074	4.30625369908875	-1.69545215765153	0.000158319930029129	0.00414782265046088
Merged-chr16-45738083-4	chr16	45737557	45738557	+	848.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073572, intron 1 of 4)	intron (NR_073572, intron 1 of 4)	4898.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	2.9838498053432	3.34575607672035	3.45963569330531	2.77908014512558	2.82077688091732	3.32581869261715	-1.21887066005523	0.11118785552789	0.445419833321467
Merged-chr16-43953197-4	chr16	43952689	43953689	+	900.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	MTD|LTR|ERVL-MaLR	25861.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	4.18885576201437	4.18857068391738	4.28986592901277	4.08557733834309	4.41075413235581	4.02554642883651	-0.0579099395423193	0.904991687032395	0.978186201733838
Merged-chr4-46575040-4	chr4	46574538	46575538	+	989.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-8598.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.27303200879522	5.06420702063787	5.44927771440568	5.90838968079215	6.31616793620658	5.98244109844802	1.53076352493975	6.27936954749775e-06	0.00026891084987555
Merged-chr13-100848870-4	chr13	100848358	100849358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15431.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.41844511932896	5.03647110984349	5.31210572194716	5.51284707061913	5.63669016353982	5.46740208903718	0.550949971744915	0.115309808002649	0.453392803340158
Merged-chr18-73746700-4	chr18	73746187	73747187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	7792.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	5.33066514620577	5.05768719454014	5.16440890385897	5.105827571599	5.01998613766646	5.43944913383708	-0.00408047215840518	0.991326308999389	0.998222399926149
Merged-chr2-102944863-2	chr2	102944363	102945363	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43198.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.715084280557	7.84354167252142	7.64610118311496	7.38973973722265	7.42071656778817	7.72925815156457	-0.326910062771221	0.165892068075182	0.541084333635215
Merged-chr13-21402652-4	chr13	21402152	21403152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145778, intron 1 of 5)	CpG	103.0	NM_001145778	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	7.24305708662458	7.79000358245561	7.45646073708275	7.49577650122489	7.28910710679083	7.44097693747876	-0.164167670978325	0.52937891378487	0.850900393266202
Merged-chr2-4554471-2	chr2	4553971	4554971	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	B2_Mm1a|SINE|B2	-5283.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.95118237571293	5.00958337621004	5.10865310622794	5.31407722165363	5.19570237512152	5.30119577107769	0.515322479948863	0.147761897529789	0.512974464688697
Merged-chr14-63121985-4	chr14	63121491	63122491	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007798)	promoter-TSS (NM_007798)	-471.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.06227191630069	7.11385279681214	7.39140907433156	7.24381766791166	7.4481221727169	7.30889845223816	0.224614563244841	0.360164053514079	0.746468395814061
Merged-chr5-112994462-3	chr5	112993962	112994962	+	805.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	21076.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	4.83985856465935	4.88256042603834	4.9277727395572	5.05974481995729	4.77160028335864	4.88297418064888	0.0564968803490219	0.88374050060569	0.973446302281334
Merged-chr5-121840565-2	chr5	121840065	121841065	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3706.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	2.97196773123639	2.94818090550432	3.19790653067624	3.01893601690062	2.69154861109004	2.73022163458287	-1.06102032868135	0.15188428597355	0.519634796559235
Merged-chr4-129696097-3	chr4	129695625	129696625	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356378, intron 1 of 9)	intron (NM_001356378, intron 1 of 9)	720.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	4.42422854828265	4.06469439974378	4.27987262396361	4.44811391664496	4.29811629965579	4.77241780721815	0.651124262266493	0.173700277895011	0.55292812026605
Merged-chr3-41082034-4	chr3	41081530	41082530	+	671.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027558, intron 1 of 2)	intron (NM_027558, intron 1 of 2)	1016.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	4.41638793992751	4.28878528414674	4.38245267383131	4.44725977741364	3.94060755165634	4.53127326149347	-0.106393213428366	0.828577258168034	0.959833682782168
Merged-chr13-58127447-3	chr13	58126954	58127954	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	1102.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	6.83056098733077	7.14864785424913	6.98655536144886	6.97501494633703	6.78669786075315	7.08346138401852	-0.0767133410416294	0.767487929320316	0.942617496111852
Merged-chr19-34879758-1	chr19	34879258	34880258	+	751.0	f0_balb.idr	promoter-TSS (NM_001114339)	promoter-TSS (NM_001114339)	-303.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	4.70010241545535	4.09495827541439	4.33323024986562	4.19907719094635	4.14198638935913	4.48530859051231	-0.335526813939871	0.500347821850736	0.834978949366358
Merged-chr5-124481477-2	chr5	124480977	124481977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1678.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	6.42132862020177	6.0468615035035	5.9519392421847	6.41968884669228	6.68702257753708	6.24581119111748	0.507934088111877	0.104840286663789	0.432054705729044
Merged-chr2-26911340-1	chr2	26910840	26911840	+	1000.0	f0_balb.idr	promoter-TSS (NM_011513)	promoter-TSS (NM_011513)	533.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	7.50393227062736	7.46124358562029	7.27095181090906	6.98849173322405	7.16604281482258	7.31701314635406	-0.388370609436697	0.110809384202301	0.444841551070303
Merged-chr2-166979251-4	chr2	166978731	166979731	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	RSINE1|SINE|B4	-14514.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	6.75219876937259	6.91186907408144	6.50904076895858	6.89319707637189	7.16533525057112	6.76016678109431	0.333654440316304	0.22955290216181	0.625184534010208
Merged-chr1-171117121-2	chr1	171116621	171117621	+	765.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4540.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	3.24667569447054	3.061305655243	3.55028089399152	3.69516637922059	3.36841129256754	3.6711676216678	1.09302460973599	0.0890569285464085	0.396482017682694
Merged-chr6-134090516-4	chr6	134090024	134091024	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	54824.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.09540279438215	4.13407814644768	3.67147653061192	4.17792634507514	4.0495355444839	4.16605604494283	0.391097527916082	0.45653359687364	0.811680471504093
Merged-chr7-45103832-4	chr7	45103335	45104335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010189)	promoter-TSS (NM_010189)	-13.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	6.49001279476165	6.1797499225776	6.52083385622233	6.22359087435692	6.46732775288086	6.64484842556319	0.0836767509891998	0.775407253855954	0.944657200275932
Merged-chr13-69536044-3	chr13	69535514	69536514	+	884.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2150.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	5.91138821408692	6.11819534288494	5.94363354313615	4.97105659808223	5.07731887299529	4.64553133700356	-2.07085848080198	5.66052097052882e-08	4.30924637617348e-06
Merged-chr17-71249111-1	chr17	71248611	71249611	+	675.0	f1_balb.idr	3' UTR (NM_001164885, exon 20 of 20)	3' UTR (NM_001164885, exon 20 of 20)	44457.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.29673688746613	3.70201955934751	3.70971305733325	3.29179053339904	3.23729196998096	3.47304243796691	-0.939445068347548	0.130671911822425	0.483186228268893
Merged-chr3-52630394-4	chr3	52629873	52630873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109351.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	3.84753202853603	3.74985531646428	4.17383933821973	3.73751035652356	3.49237889908876	4.07053093312653	-0.471843651303706	0.413041192909646	0.784754688426209
Merged-chr7-92837380-4	chr7	92836861	92837861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029494)	TTS (NM_029494)	36886.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	3.75512732275579	3.4286255315211	3.63117637421228	3.1688714308781	3.37736940574804	3.49121134402174	-0.976162750813769	0.11256218161868	0.448241038651517
Merged-chr2-31061382-2	chr2	31060882	31061882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35118.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.63089757428429	6.39688949193329	6.64221923889772	6.22854311947422	6.17082299771223	5.92510630344175	-0.715037552994584	0.0128271187908163	0.119815772378339
Merged-chr19-57358549-4	chr19	57358063	57359063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	2336.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	6.20487345263485	6.15551634893905	6.38737287970093	6.08779140440557	6.02554181724771	6.26022352759002	-0.213324051151469	0.45734334439209	0.812230534452681
Merged-chr14-47507455-3	chr14	47506920	47507920	+	785.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027414, exon 3 of 6)	non-coding (NR_027414, exon 3 of 6)	34859.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	4.42095106196891	4.27649934463295	4.76074360067785	5.92116440749471	6.07863426976108	6.17861751962591	3.34567595042315	2.36727590239278e-17	1.02060255588756e-14
Merged-chr5-143526103-2	chr5	143525603	143526603	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	Lx8b|LINE|L1	1890.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	4.99379168200401	5.30564460371503	5.21050443828839	5.29873377786954	5.40955327756929	5.39863242980325	0.388592876920103	0.272087955308281	0.669529543069504
Merged-chr6-34908845-2	chr6	34908345	34909345	+	967.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 2 of 14)	ID_B1|SINE|B4	1986.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	4.91990743621786	5.18097510731082	4.83372222468842	4.79930303195688	4.52457978717071	4.52403872355489	-0.845070930545218	0.0409544506194149	0.252462433482018
Merged-chr4-116719600-4	chr4	116719112	116720112	+	796.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	3.2824318281989	3.05590248435732	3.2779322278568	3.03069324926863	3.40474577641186	3.29326463822437	0.199096796198661	0.761900898213373	0.941351378530845
Merged-chr2-25429177-2	chr2	25428677	25429677	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007379, intron 1 of 47)	intron (NM_007379, intron 1 of 47)	503.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	3.86615889974582	3.53045180226164	3.53242236547031	3.64086416730175	3.35950861063952	3.37136070560364	-0.688497185437833	0.251887292695084	0.649428218365646
Merged-chr5-110386247-6	chr5	110385660	110386660	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	967.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.89660044404896	4.26525861453022	5.08037340163634	5.63000655467967	5.66254509840112	5.43117276050356	1.64103719351966	0.000157156128895865	0.0041274299014927
Merged-chr16-4371236-4	chr16	4370753	4371753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49245.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	5.47868462316334	5.60469870272925	4.99129269015646	5.17670292111979	4.97196872154316	4.9403850866837	-0.735796490815372	0.0591751010687639	0.31500491393575
Merged-chr10-78148142-4	chr10	78147623	78148623	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	21645.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	5.19848605594735	4.94260015551999	4.85779629667194	4.72303244116122	4.60915562961658	5.06428734114873	-0.473513526150894	0.248798128879477	0.645819769301048
Merged-chr5-28315711-3	chr5	28315161	28316161	+	865.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR87|LTR|ERVL?	-1528.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	3.480380852427	3.47450972069588	3.40646506404958	2.95254442591182	3.19811979991981	3.00149205520154	-1.66328515552526	0.0153764245426034	0.134990666104763
Merged-chr14-54442728-4	chr14	54442204	54443204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008608)	TTS (NM_008608)	11106.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	5.01206728696684	4.58201406342538	4.4063351230899	4.92253085740401	4.56598363077221	4.85438834978209	0.188666309169819	0.676956660114719	0.912626330986626
Merged-chr5-3357758-2	chr5	3357258	3358258	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	B2_Mm2|SINE|B2	13865.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.44048603984641	3.76350786805303	3.81891801540465	3.56937064198101	3.47661168269187	3.8871316502469	-0.113876912334053	0.845842007871551	0.963945177091542
Merged-chr8-105701611-4	chr8	105701104	105702104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-43.0	NM_001047435	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	7.29514070695408	7.65477612273564	7.19614405781055	7.39736139435296	7.86551673542331	7.4714585000842	0.288948233585177	0.289801129090783	0.687499011556393
Merged-chr10-98799028-6	chr10	98798502	98799502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115640.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.54243433473558	7.56197760818027	7.00434949646144	6.88814074281902	7.06338979148729	6.70268068112433	-0.753542525046438	0.00742701881599698	0.0816040382465967
Merged-chr17-32284767-4	chr17	32284292	32285292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-659.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	8.44700013216691	8.08345623005695	7.95986343611351	8.31379629902666	7.80488215350751	8.08995669990301	-0.140962449634637	0.588572337734033	0.876564224256956
Merged-chr8-120768764-4	chr8	120768279	120769279	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30140.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.37969632980377	3.29426960314975	3.29870218227986	3.49305013401207	3.32296105881893	3.58848237151467	0.538124344702531	0.369013829689981	0.753809303364759
Merged-chr6-39384256-3	chr6	39383746	39384746	+	887.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011226, intron 2 of 3)	intron (NM_011226, intron 2 of 3)	2893.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	2.60875687781779	2.57503973014133	2.78725243454847	2.80747510208984	2.78826405246701	3.03419760092594	1.17512246286535	0.115089139002541	0.452824308109597
Merged-chr10-67123937-4	chr10	67123426	67124426	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3332.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.52925485599847	5.3530828540356	5.24107150357676	5.5550849672793	5.43594786953577	5.57921664026522	0.254416790982737	0.451126060145782	0.808941172178744
Merged-chr14-63147272-1	chr14	63146772	63147772	+	642.0	f0_balb.idr	intron (NM_001360211, intron 7 of 7)	intron (NM_001360211, intron 7 of 7)	24810.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.14104620146565	3.4538605509024	3.57822474622949	3.24698901672443	2.94185098646206	3.64742396478407	-0.35095685764469	0.61952848291374	0.889823933162803
Merged-chr9-124122257-4	chr9	124121725	124122725	+	993.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009917, intron 1 of 1)	intron (NM_009917, intron 1 of 1)	682.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	7.80454182513695	8.11579193621866	7.3666976516274	8.10206977787322	8.39545865483884	7.83838573215537	0.468038879949612	0.106644367555127	0.435916169724877
Merged-chr1-186708922-4	chr1	186708425	186709425	+	889.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2936.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	2.96098559169332	2.95520010151293	2.98938548213846	2.6992321738454	2.66040446080216	2.55587970487671	-1.76418056777797	0.0228715446606094	0.176539470141001
Merged-chr10-8880230-2	chr10	8879709	8880709	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	5861.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.62421976495605	5.6708855900879	5.89790055610914	5.73043311312317	5.65188595734693	5.71456190751887	-0.0546463018877288	0.862126909590632	0.967996224966109
Merged-chr1-172004608-3	chr1	172004079	172005079	+	953.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	22716.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	3.85342690307065	3.49906118475729	3.44213069723622	3.33436345743809	3.44346434320838	3.45719090365526	-0.744962037180961	0.216158961215498	0.609585360782674
Merged-chr18-53244916-2	chr18	53244416	53245416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-746.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.51808531963718	7.70103779599534	7.43218715659053	7.47930100851248	7.84808806477454	7.59070283302233	0.137513030502691	0.571661944473662	0.869547320544841
Merged-chr11-89022519-4	chr11	89022010	89023010	+	836.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	23107.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.70076668719512	6.58144291239708	6.70691177230213	6.56819526165787	6.63741551078919	6.91063825165798	0.069169844310796	0.793863117422927	0.950531747588938
Merged-chr4-3678110-4	chr4	3677608	3678608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-13.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	8.49711464760012	8.75935730172779	8.33363740604523	8.46751854637296	8.74475700185333	8.29504355264917	-0.0345153691127488	0.886902603772091	0.973794308941933
Merged-chr12-102295490-1	chr12	102294990	102295990	+	768.0	f1_balb.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	11849.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.91084316528289	3.71580528575736	4.0307944413264	3.45795692339785	3.28468274230395	4.14036608554561	-0.665555616146479	0.305396489986202	0.701546881419356
Merged-chr12-3871079-4	chr12	3870559	3871559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8815.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.63246332811789	6.63843222373309	6.39744340840098	6.64785382467119	6.6397042433672	6.11073828268392	-0.102410259951357	0.731174151496448	0.931321966716413
Merged-chr8-78624220-4	chr8	78623723	78624723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	114895.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	4.58292570117744	4.58803467418621	4.44406504009212	4.36958908924468	4.69654824123744	4.27986230903982	-0.167389467456976	0.710380569528692	0.924293540432205
Merged-chr12-51790482-2	chr12	51789982	51790982	+	852.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144788, exon 14 of 43)	exon (NM_144788, exon 14 of 43)	39054.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	3.17479416999638	3.32073215889408	3.46196883716454	3.15291564518885	3.51206712608106	3.31424513290262	0.082709821956959	0.896480697702708	0.975838835430135
Merged-chr5-139299331-2	chr5	139298831	139299831	+	704.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	26133.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	3.67743503190322	3.48996582745819	3.59445007290132	3.68241224077101	3.4830597542232	3.44295999716767	-0.170370896282298	0.765940183110454	0.942315542034148
Merged-chr15-102395224-4	chr15	102394739	102395739	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11077.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	5.40336958504798	5.15496557196978	5.21753569806059	4.74940879366706	4.84848634157362	5.2808792016285	-0.623399747501871	0.112056188889695	0.447085656443716
Merged-chr13-113437765-4	chr13	113437241	113438241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65103.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.43991946705057	5.16584784580639	4.78052331723833	5.27572843352402	5.00617110111137	5.43880165288222	0.153105626502882	0.708488503468008	0.923708659245088
Merged-chr4-127043662-4	chr4	127043167	127044167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17487.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	6.83142386636931	6.37804166711244	6.67426173951312	7.43926102617392	7.19377686351054	7.09731156503649	0.938976996026907	0.000624055174682121	0.0125003329260833
Merged-chr9-65983021-3	chr9	65982506	65983506	+	871.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173185, intron 5 of 13)	intron (NM_173185, intron 5 of 13)	73996.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	2.06257675625066	2.04572891858022	2.17590066718729	2.60668292452272	2.42081617271596	3.06101428475108	6.27700780474468	5.46070045813613e-06	0.000238641787668377
Merged-chr8-39318921-1	chr8	39318421	39319421	+	914.0	f0_balb.idr	intron (NR_044988, intron 2 of 3)	Lx6|LINE|L1	20941.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.01121920602263	3.11030700332679	3.20746302790726	2.70420192046922	2.78883379015075	2.81122532098749	-1.71738918800434	0.0186853053766098	0.154610868116243
Merged-chr2-80026851-1	chr2	80026351	80027351	+	666.0	f1_balb.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12051.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	5.5551414988331	5.54649616788403	5.89147686766371	5.78833635647735	5.56426509711653	5.85989095607798	0.132518266586746	0.688614854540888	0.9172299553909
Merged-chr6-38712028-2	chr6	38711528	38712528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	48959.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.34291591737401	5.9196740155111	5.66678135765689	5.99623277422013	6.27974597506926	6.01924160797386	0.156217997039765	0.644451503803388	0.900210434145893
Merged-chr18-61098345-4	chr18	61097861	61098861	+	767.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3B|LINE|L1	-7211.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.87309282588702	6.73277440739179	6.72644267476054	7.03084585713615	7.18667004114407	6.83250142339944	0.38875494638348	0.129625654068051	0.481622840280538
Merged-chr7-132805041-3	chr7	132804546	132805546	+	748.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	8150.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	5.62942871174922	5.58194445282217	5.68181151994849	5.31332666052387	5.24507509294531	5.34879323062403	-0.637242748429104	0.0520778115245786	0.291568465976123
Merged-chr10-121369044-4	chr10	121368527	121369527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3937.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	6.43908370907649	6.44872441613532	6.25272968968488	6.45027161497918	6.53278317268769	6.29234772624978	0.076393731552135	0.78045748278702	0.9460578705437
Merged-chr15-81393172-4	chr15	81392676	81393676	+	892.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133726, intron 1 of 11)	intron (NM_133726, intron 1 of 11)	6518.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	4.73628665581852	4.34601984039481	4.68053261331172	4.78828350815297	4.85482766492845	4.25011904346298	0.171231487234028	0.716418863157985	0.926569584146506
Merged-chr10-117280346-2	chr10	117279846	117280846	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 2 of 3)	intron (NM_017372, intron 2 of 3)	1926.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	5.47361426475314	5.81438546029732	5.58446179570956	5.59006050559564	5.61767920837883	5.72727000698944	0.0101854942925136	0.975162172778162	0.994454548709104
Merged-chr6-122724854-4	chr6	122724364	122725364	+	932.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	17299.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	4.33229345826999	4.16158673197077	4.69490836027874	4.31153269517898	4.37334339010023	4.53518488016607	0.00672829766976585	0.988541960133987	0.997426973334006
Merged-chr10-51520197-4	chr10	51519689	51520689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	29291.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	5.1142670088436	4.74409750907562	5.06138917618149	4.74321572126735	4.51002251006415	4.8485345112493	-0.638671052379423	0.122077434376662	0.467378608401301
Merged-chr8-69750059-4	chr8	69749539	69750539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001200023)	promoter-TSS (NM_001200023)	-77.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	7.9752074220767	8.13717268747916	7.94572771680515	8.04820086153256	8.09353934285638	7.93169168274016	0.00642712611857913	0.97610886449021	0.994572735300192
Merged-chr6-100335598-3	chr6	100335076	100336076	+	584.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48218.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.77535414751327	2.69950606222494	2.54797018599464	2.72072151580959	2.62045945703372	2.92949323017004	0.411157355408622	0.592253251490811	0.878003422897225
Merged-chr5-34974029-2	chr5	34973529	34974529	+	754.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173402, intron 2 of 16)	L1MB3|LINE|L1	24581.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	4.58895541571909	4.62094223211648	4.61293894433778	5.22704303315436	5.28850152332657	5.10280657570024	1.33983933168147	0.000442978786571011	0.00956309834456538
Merged-chr10-127069558-2	chr10	127069058	127070058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040660)	promoter-TSS (NR_040660)	703.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	4.8417788888098	4.75947615133462	5.07685031454356	4.86227215821068	4.82333144558957	4.82677960807177	-0.115557339559205	0.767420258058336	0.942617496111852
Merged-chr8-13595003-4	chr8	13594513	13595513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-32552.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	7.06226546461633	7.40704465664423	7.05238292354836	7.00790802038956	7.11511409237223	7.02997747788383	-0.207015485710576	0.413827455021911	0.785387744393932
Merged-chr1-34439405-12	chr1	34438887	34439887	+	999.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178601)	promoter-TSS (NM_178601)	285.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	7.22050597054137	7.49588590196109	7.11604813092558	7.29499552128814	7.38339139967348	7.22401503996024	0.0162824974801916	0.94745305946867	0.988008807662239
Merged-chr11-118453347-2	chr11	118452847	118453847	+	859.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 1 of 2)	RMER13B|LTR|ERVK	1648.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	6.30403038368694	6.33022148256101	6.34592705665998	5.79165290084434	5.91816185703134	5.83981697914587	-0.806153450728687	0.00476549979016325	0.0592689364181512
Merged-chr4-101685348-4	chr4	101684859	101685859	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32048.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	3.34602591188575	3.33610130234743	3.77468436524583	4.05277975700196	4.01755567705678	4.29512489757052	2.13899317865861	0.000269436053269805	0.00638147339985514
Merged-chr18-56430692-2	chr18	56430192	56431192	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	-1440.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	2.8381637268277	2.67437986137757	2.8382917150752	2.71068472680909	2.82646260367361	2.66188019220596	-0.233142723900359	0.752092701782492	1
Merged-chr12-26455611-2	chr12	26455111	26456111	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	841.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	6.18229672702313	6.04412554375925	5.93326388594229	6.24207446404349	6.12452913739342	5.99458114442172	0.111251804562767	0.704199618456189	0.9223772679418
Merged-chr11-69838445-4	chr11	69837944	69838944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-81.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	7.96353807096209	8.10957526734766	7.57920260389382	7.69555623070371	7.84576925692094	7.37611486005155	-0.356134801193318	0.179524099402261	0.561087828684346
Merged-chr17-56277595-3	chr17	56277132	56278132	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-865.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	7.36279317124809	7.53454433938777	7.13200275805582	6.96001719426662	7.31794153274061	7.05809282806164	-0.346884409382754	0.184565535822946	0.56829044423897
Merged-chr11-70970694-7	chr11	70970201	70971201	+	993.723816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_075087)	promoter-TSS (NR_075087)	501.0	NM_001252415	69723.0	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	7.29541743304488	7.60776661801654	7.12641064055265	7.55306360091099	7.86763836930067	7.34538912686494	0.363734279478526	0.184293534711504	0.567896082682157
Merged-chr9-78482546-4	chr9	78482056	78483056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-832.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	7.45278487104764	7.49846045747471	7.73189498341587	7.42174816522134	7.71532876742821	7.76346016433878	0.116462622586419	0.629421460724733	0.894228388402321
Merged-chr17-29363305-4	chr17	29362802	29363802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	2388.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.34163867459783	5.30692136522337	5.72932914314027	5.26849953153704	5.48578427399317	5.12221547883784	-0.291364451776841	0.429590361425533	0.795827826691029
Merged-chr8-117054913-2	chr8	117054413	117055413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029686, exon 14 of 43)	exon (NM_029686, exon 14 of 43)	27536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	7.12068794509797	6.82640320297331	6.98663902478187	7.23318505487459	7.25582048234955	6.82438293555877	0.220689175287208	0.407771068760146	0.781873423959653
Merged-chr2-5824868-4	chr2	5824363	5825363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356504, intron 3 of 6)	intron (NM_001356504, intron 3 of 6)	-20171.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.07868767633314	4.55942826114204	4.68896240712531	4.60990831089972	4.72316011024633	4.8325677569209	-0.181302540277466	0.672497240600075	0.91086468829214
Merged-chr17-24898012-2	chr17	24897558	24898558	+	586.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019730)	TTS (NM_019730)	1558.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	2.11249970549609	2.08071178466738	2.28317756399904	2.11837811033846	1.98143262009703	2.0963463764026	-0.709976518856042	0.435452224007678	1
Merged-chr11-85505959-3	chr11	85505453	85506453	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 15 of 25)	intron (NM_138681, intron 15 of 25)	152789.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	3.87757029527605	4.05500130913316	4.50821709334783	3.88949375738935	3.85601763555847	3.89117795839092	-0.842299604542991	0.115185871775882	0.453033939247855
Merged-chr12-119371511-4	chr12	119371019	119372019	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71891.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	4.88343432394134	4.97994618182838	4.90931314390097	5.15699272568076	5.36068278897387	5.39725539100582	0.804198215478323	0.0269270437632388	0.195437147492332
Merged-chr18-49850537-4	chr18	49850025	49851025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 5 of 42)	intron (NM_001081371, intron 5 of 42)	17528.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	6.25213793588543	6.0968054022474	6.03562719011259	5.95971581395873	5.94488659041335	6.05132196702739	-0.265576547451365	0.358818248206438	0.745184166045059
Merged-chr12-12279509-4	chr12	12278987	12279987	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	17348.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.09876735975957	7.3878097674426	6.96518954804518	6.84179017755469	7.09264357309123	6.73276655176277	-0.398268135746709	0.142073636134517	0.503213792431403
Merged-chr9-72491944-4	chr9	72491431	72492431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009359)	promoter-TSS (NM_009359)	28.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	3.06162431147442	3.10291937374493	3.39207838816275	3.12478582118548	3.20552581867823	3.13144380417377	-0.125684836603258	0.846837499831384	0.964111312125802
Merged-chr9-63714855-3	chr9	63714331	63715331	+	929.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	L1MB7|LINE|L1	43163.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	4.01555567477227	3.80251693575422	3.51758839125278	3.44919170205675	3.55306464836702	3.2817069779303	-1.26189353853019	0.0423209168263683	0.257824528209141
Merged-chr4-129810421-4	chr4	129809934	129810934	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10045.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	8.16098423761516	8.16750116484425	8.08486938979216	8.53748007540863	8.86408370320001	8.02026540298368	0.544171855511722	0.0437643412877532	0.263022268679767
Merged-chr10-5288483-4	chr10	5287980	5288980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347711, intron 55 of 145)	intron (NM_001347711, intron 55 of 145)	-93773.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	3.47372687610783	3.93509506515906	3.68391120285498	3.68528495985394	3.53766509359759	3.35497155078981	-0.614177756453535	0.308577175789599	0.70458397876447
Merged-chr6-84661880-3	chr6	84661315	84662315	+	854.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-67907.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.39513883276979	4.30584512092663	4.27947209152599	4.00673102207594	4.09731733917404	4.01622055394397	-0.805743611599577	0.086710957364328	0.390131400817389
Merged-chr1-135536558-4	chr1	135536060	135537060	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	48795.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	5.58911828065404	5.13537595126112	4.99760790660143	4.38683970318299	4.39938978874368	4.84182935179631	-1.62445987092312	0.000214233096979151	0.00529115688140137
Merged-chr9-56995031-4	chr9	56994543	56995543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019651)	promoter-TSS (NM_019651)	75.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	7.06092553005496	7.17035787406042	7.09858572551459	6.993418805628	6.79166066277016	6.87076358737414	-0.344762372886282	0.155880835886496	0.525953229489622
Merged-chr13-98836791-2	chr13	98836291	98837291	+	799.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-21342.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	2.83981641382581	2.701189182756	2.92959962193979	2.83044882034907	2.65286337964623	2.82334483559269	-0.286167140033145	0.693872968017967	0.919065250351864
Merged-chr15-79401101-2	chr15	79400601	79401601	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	1818.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	3.95338881949299	4.06544672145551	4.1740762751355	3.78760843512058	4.03397687091717	3.80716648010571	-0.519138717469188	0.313137362930921	0.707761549811378
Merged-chr4-88309937-4	chr4	88309440	88310440	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 21 of 43)	intron (NM_001081184, intron 21 of 43)	128986.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.1765614876078	3.14627433295234	3.01531172891509	3.38854851670208	2.83610250726064	3.15093583057613	0.121420442095923	0.8636004876055	0.968269312109804
Merged-chr12-79296351-4	chr12	79295873	79296873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	-91.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	7.63000557087501	8.13319251308484	7.69806565421024	7.71330165095	8.11060431902307	7.41943724161866	-0.0795931690017831	0.782837756793247	0.946764786373054
Merged-chr14-46734960-4	chr14	46734471	46735471	+	786.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25570.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	4.84108830843141	4.64196815391727	4.92277429404688	4.65041034466417	4.67893260834823	4.88207218550809	-0.153451134989364	0.704286696094389	0.9223772679418
Merged-chr7-143067895-2	chr7	143067395	143068395	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133655)	TTS (NM_133655)	-1473.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	4.3531456435946	4.53708050940866	5.29411163659078	4.81982071181819	4.6569387560348	5.06782112491179	0.148884653911775	0.762858598414248	0.941663714620562
Merged-chr3-95316445-2	chr3	95315945	95316945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	1255.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	4.48926650655181	4.58753251347026	4.87593509081473	4.73281670464335	4.53530274711535	4.60385222994053	-0.0613528731422959	0.885156434936475	0.973549591486895
Merged-chr19-4286324-2	chr19	4285824	4286824	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130863, exon 22 of 22)	3' UTR (NM_130863, exon 22 of 22)	-3187.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	3.97868217529072	3.94848557016308	4.11728972709442	3.99538390892548	3.79307373589471	4.22812365055173	-0.0176856178577716	0.972390791920576	0.993868590220018
Merged-chr15-101375124-4	chr15	101374627	101375627	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	4.85333372109697	4.77787375492866	4.70690024155846	4.18078276178457	4.32639880626218	4.69634178157254	-0.918562698164847	0.038196732458513	0.241822545416415
Merged-chr8-119344437-4	chr8	119343960	119344960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024219)	promoter-TSS (NM_024219)	-78.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	5.99261254326039	6.1178333599838	6.01938796138595	6.29470778981177	5.98738993610433	6.01088214349353	0.101433773284521	0.732029263488635	0.931655063903171
Merged-chr17-45596272-1	chr17	45595772	45596772	+	1000.0	f1_balb.idr	promoter-TSS (NM_001199116)	promoter-TSS (NM_001199116)	-370.0	NM_001199114	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	3.59216607468425	3.27511716369335	3.55063777332186	3.18673047502145	3.20799913700048	3.40945549311376	-0.830697870506226	0.182389599868841	0.565196424421292
Merged-chr3-67582753-4	chr3	67582244	67583244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	-24.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	7.51245716915951	7.94581048091114	7.58063406472727	7.5605635670934	7.60327463390436	7.17869277513555	-0.33304333888282	0.207340181493277	0.598105800717372
Merged-chr10-13304868-4	chr10	13304355	13305355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	19434.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.98145633798163	6.04471538387191	5.78852385557981	5.87807009484423	5.73538784132324	5.5704336984132	-0.374504439298452	0.231567153151609	0.627507317118448
Merged-chr15-27669517-2	chr15	27669017	27670017	+	791.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	12025.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.80940311791514	6.39362246729331	6.63721161441276	6.42544882695199	6.38870093017259	6.63141120031014	-0.232905802018083	0.40900411477306	0.782473112145764
Merged-chr15-59612011-4	chr15	59611537	59612537	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36617.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.34896392391029	3.26664271070689	3.56634554674962	3.51218547330786	3.86655636815824	3.58379924231434	1.010059806301	0.0907911399496409	0.400963280766929
Merged-chr17-70832760-4	chr17	70832280	70833280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13997.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.62186823103624	8.72077780291471	8.34046819250555	8.36539586924722	8.82604272414039	8.25535223767264	-0.0831216955432692	0.744410592276562	0.935982277711273
Merged-chr19-55866050-4	chr19	55865533	55866533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-29288.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.9075802377414	5.73570784666259	5.61451547018738	5.35304450302827	5.66251647136432	5.56384996569471	-0.419254346830537	0.205175675232273	0.595816936654911
Merged-chr5-64600098-4	chr5	64599578	64600578	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045078, intron 3 of 3)	intron (NR_045078, intron 3 of 3)	10621.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	4.8416372227379	5.02281111666438	4.4792221083841	5.16053436338949	5.38524013768275	5.12444908658133	0.887662408142801	0.0315519994295484	0.215142077237881
Merged-chr10-25443788-3	chr10	25443291	25444291	+	973.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013511, exon 3 of 20)	exon (NM_013511, exon 3 of 20)	35423.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.86427034650943	5.08683920133116	5.14508107157781	4.45879317572836	4.78856893537877	4.90956354948103	-0.676705065810142	0.0996923187568172	0.421076063914581
Merged-chr8-33670969-1	chr8	33670469	33671469	+	646.0	f1_c57bl6.idr	intron (NM_010344, intron 3 of 12)	intron (NM_010344, intron 3 of 12)	17731.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.09085312601394	3.04674317242677	3.10040634127779	3.75275847237254	3.39162925463373	3.47254050038894	1.9343770797683	0.00289473923360137	0.0409704817400073
Merged-chr4-102581661-1	chr4	102581161	102582161	+	919.0	f1_balb.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-5897.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.24965526836441	3.00970167960842	3.41353653988549	3.39164033641824	3.0453488649118	3.43138708503829	0.267487465446176	0.688315584416192	0.917195617643048
Merged-chr4-74362952-4	chr4	74362452	74363452	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 16 of 20)	L1MDa|LINE|L1	111073.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	3.13738547086583	3.14253469142654	3.3037058193842	3.13732205472055	3.02509689301971	3.37404162047073	-0.0585476612169223	0.928077568723921	0.983802612059568
Merged-chr6-122633496-4	chr6	122632975	122633975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	7051.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.99563664924263	7.21250481460022	7.12647532292381	6.94925143622949	6.9887289498114	6.97571515455027	-0.217584581067867	0.366537039670757	0.751609591328412
Merged-chr7-30287246-3	chr7	30286743	30287743	+	815.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-4452.0	NM_001360763	76686.0	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	2.89717775453201	2.52394901242741	2.80911765902374	2.57536342132474	2.54166943288353	2.56985590032899	-1.06751448117147	0.177285767999704	1
Merged-chr18-9731168-3	chr18	9730670	9731670	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	23522.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.49650428610836	6.74193727793955	6.47808453572398	5.1835582724267	5.42684228435842	5.41845593975239	-2.17039366371337	7.89775532133553e-12	1.29616651829918e-09
Merged-chr1-162622113-3	chr1	162621604	162622604	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17046.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	5.34391123338091	5.30659801266878	4.77708078042861	3.63004970853227	3.49490387558531	3.74503189654911	-5.35314950717017	2.33541750324601e-12	4.20345746341485e-10
Merged-chr13-100837330-3	chr13	100836837	100837837	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	2.50644410516549	2.50850196866207	3.06744544521015	2.56216160437803	2.63896019706439	2.55656681805601	-0.693781529698934	0.400854771130723	0.777027234158915
Merged-chr10-4395580-2	chr10	4395080	4396080	+	872.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7472.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	3.4894913739235	3.59918830538295	3.8042670508837	3.28715767315763	3.16194635534502	3.73174125571638	-0.821377155553378	0.197791315665666	0.585916899637179
Merged-chr2-102867944-4	chr2	102867456	102868456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	33709.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.27758753930468	5.00798240746098	4.7925466064317	5.01411255834206	5.0866185871524	5.15446123812376	0.0654957479868381	0.865474609395037	0.968641478520565
Merged-chr10-89485118-2	chr10	89484618	89485618	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009108, intron 2 of 8)	intron (NM_009108, intron 2 of 8)	21540.0	NM_001163700	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	2.61966767362047	2.70243608102081	2.83280729013671	2.60143757836695	2.74534934212451	2.59678906434762	-0.34438238824429	0.649561792897422	1
Merged-chr14-122108482-2	chr14	122107982	122108982	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	1400.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	5.65882417256362	6.07119896514686	6.06484902994163	6.14923613831353	6.40981145399733	6.08127903930324	0.492256330307727	0.118836741610541	0.460793494381373
Merged-chr3-135440296-4	chr3	135439800	135440800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1174.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	7.62303551328915	7.85464598935977	7.61552624018807	7.56116126754373	7.94753345445287	7.58539504046101	0.0181884763545869	0.941009063163077	0.986888338850358
Merged-chr7-83655410-4	chr7	83654873	83655873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 13 of 19)	exon (NM_001360087, exon 13 of 19)	122.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.80946113526582	7.03761131384381	6.82590062260557	6.62118496275942	6.65655563811191	6.84025324150037	-0.304866051444097	0.23653060549664	0.632745673713476
Merged-chr12-87443826-4	chr12	87443312	87444312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026958)	promoter-TSS (NM_026958)	27.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	8.2296233434025	8.75347218169779	8.14178330991356	8.42518557143727	8.66100572469275	8.26995900993376	0.0765731980125489	0.771977195085457	0.943680976839558
Merged-chr1-156003735-1	chr1	156003235	156004235	+	666.0	f1_c57bl6.idr	TTS (NM_001160019)	TTS (NM_001160019)	-30480.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	4.14455969357217	4.14592141685266	4.80080731304055	4.65965615039498	4.39929989514146	4.89814594161122	0.663720149113241	0.185424148135574	0.569485749808491
Merged-chr11-59520116-2	chr11	59519616	59520616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-13476.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	2.02284520695128	1.99310825778935	2.29597439840987	2.06656361196438	1.81879129369125	2.11346512282915	-0.801817833705291	0.416890608648667	1
Merged-chr17-13010813-2	chr17	13010313	13011313	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 3 of 4)	B2_Mm1t|SINE|B2	2974.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	4.50239444914313	4.17755201031332	4.43718529998648	4.35412041869194	4.66321666315198	4.37343705803006	0.268765559812222	0.558564842339231	0.864727024268474
Merged-chr6-50974020-4	chr6	50973532	50974532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197917.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	4.24700119608465	4.48324969209405	4.39918908001063	5.19847564987945	5.0948244540251	5.42171141185065	1.95867810581198	2.845253802781e-06	0.000135361851584792
Merged-chr11-99202543-3	chr11	99202025	99203025	+	657.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28492.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	4.36685094939884	4.20018633226153	4.35324593946716	4.57931992561335	4.33824065980321	4.69851900061223	0.598738862097631	0.183160002004444	0.566135863550735
Merged-chr13-33005722-6	chr13	33005135	33006135	+	768.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009256, intron 1 of 6)	intron (NM_009256, intron 1 of 6)	1094.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	4.05219304011783	3.88164431693845	4.0073339793159	4.46760929021251	4.27144092549734	4.07794319356347	0.866367222141297	0.0760992126113191	0.363130192223949
Merged-chr12-51829486-4	chr12	51828987	51829987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144788)	promoter-TSS (NM_144788)	49.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	8.9603571052674	9.30019637797455	8.81487108115252	8.92595880320386	8.64677203253809	8.63098347978575	-0.415103647856211	0.0771110877711428	0.366057701464015
Merged-chr4-41760424-4	chr4	41759925	41760925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172054)	promoter-TSS (NM_001172054)	-18.0	NM_001163401	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	5.47067978785649	5.62510272244521	5.69883446120972	5.91720058878881	5.91055959012431	5.90985040294709	0.574212931285781	0.0620022849360165	0.323332045936078
Merged-chr6-149342914-1	chr6	149342414	149343414	+	566.0	f0_c57.idr	Intergenic	RLTR45|LTR|ERVK	33500.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	2.56194419696895	2.494417476839	2.69410803663266	3.22464136962859	2.94272069106512	2.96168711369668	2.68468484743832	0.00102790680418861	0.0184279268923694
Merged-chr16-65561945-2	chr16	65561445	65562445	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	752.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	6.15044122167791	6.11169843990072	5.87214237454841	5.84742420450494	5.72142700657806	5.72471710059058	-0.517058373606371	0.0880419749886143	0.393677438925061
Merged-chr14-19750638-3	chr14	19750135	19751135	+	968.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-622.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.82082005050335	5.92096443373295	6.00386116390328	5.03044128188215	5.18220622094544	5.02277301605965	-1.58108260180898	3.80335958051966e-06	0.000174267590295088
Merged-chr9-121598303-1	chr9	121597803	121598803	+	623.0	f1_c57bl6.idr	intron (NR_040740, intron 1 of 3)	intron (NR_040740, intron 1 of 3)	11283.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	2.69800007946655	2.65273796804316	2.56431805889933	2.62644037670401	2.51540189580248	2.88355856663719	0.199370864580595	0.797094665288762	1
Merged-chr1-45897307-2	chr1	45896807	45897807	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	28287.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.12779699883866	4.29540811020996	4.48760094077275	3.96974130861501	4.18787794664006	4.43511070735594	-0.271389647801994	0.578741169285214	0.872437129840066
Merged-chr11-29787046-4	chr11	29786549	29787549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38619.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	7.5459644884861	7.64907715893063	7.21959660056959	7.61803553607292	7.926322406689	7.53690621606506	0.318559380880209	0.215031665341975	0.60831451432275
Merged-chr14-66845682-4	chr14	66845177	66846177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	22923.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	6.25304472387394	6.19395145451543	5.83227555061976	6.2795674057693	6.51334307507593	6.53275426784553	0.541699416213896	0.0696765755293626	0.345526189262129
Merged-chr19-16407912-4	chr19	16407413	16408413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27754.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	5.37066560096986	5.290392500064	5.65267773283305	6.26189187289434	6.10178492692478	5.96619499227747	1.24087521231673	0.000106476635456951	0.0029901140341215
Merged-chr13-9181231-4	chr13	9180729	9181729	+	981.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87348.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.37449102996946	5.36424239026563	4.89071450230128	5.51219038259294	5.33280142646773	4.8747858589988	0.073656931680213	0.857667130488869	0.966785186918462
Merged-chr10-111365256-4	chr10	111364744	111365744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66565.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	3.86119644307926	3.84716681573924	3.95624705981535	3.69325852416251	3.4228054134707	3.56509382803097	-1.10937776329096	0.0450638648508658	0.267814732269898
Merged-chr19-42131338-4	chr19	42130858	42131858	+	918.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2365.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	6.60584550644441	6.45373310305717	6.57390397519545	5.6477072515635	5.68808046364004	6.00295719344299	-1.30743942848681	8.69285935585628e-06	0.000354219119139123
Merged-chr17-32924865-4	chr17	32924350	32925350	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130882, exon 13 of 13)	exon (NM_130882, exon 13 of 13)	-7494.0	NM_001357788	64385.0	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	3.71925477773759	4.13365664524616	3.85458206093054	4.13888462783616	3.77715580298553	4.29555328392915	0.476818585639545	0.385054245075599	0.766185848440836
Merged-chr10-43828594-1	chr10	43828094	43829094	+	639.0	f0_balb.idr	intron (NR_131055, intron 1 of 2)	RMER20C_Mm|LTR|ERVK	2687.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	3.43452882504469	3.63812606629644	3.64672804034627	2.87651639428042	2.87883612824028	2.98532609174138	-3.2561791730481	2.63438004589424e-05	0.000922953662563235
Merged-chr4-56222225-4	chr4	56221692	56222692	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	519233.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	5.81823535035343	6.08078332904445	5.88441601344374	6.20955953340768	6.32799060933768	5.89567572491705	0.39913142158865	0.19792025820507	0.586043439320662
Merged-chr2-29802642-4	chr2	29802153	29803153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011989)	promoter-TSS (NM_011989)	-27.0	NM_011989	26569.0	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	3.94318535476882	3.7090762738279	3.8590247358516	3.73214724393235	3.50899434566838	3.92779493624878	-0.378581515635798	0.493432535783153	0.831292456720887
Merged-chr16-11411923-4	chr16	11411413	11412413	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290148, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6265.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	4.03667439302774	3.97301320305377	3.77405392816426	3.67186883631781	3.72561119529133	3.62496798506744	-0.842804143378811	0.115683301069234	0.454046043177773
Merged-chr4-120949276-3	chr4	120948854	120949854	+	800.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001005788, exon 2 of 6)	exon (NM_001005788, exon 2 of 6)	2347.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	5.69975029313097	5.90762640478326	6.0894018146231	6.20315274362377	6.05437999834057	6.51812145313145	0.620382664023076	0.0503957580536031	0.285688120733357
Merged-chr5-32138574-4	chr5	32138075	32139075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2103.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.76058561599318	7.4471200952945	7.36494187248502	7.19175724336193	7.37607299263075	7.68501570758254	0.30270892168924	0.312986784643876	0.707613396148954
Merged-chr14-77850798-3	chr14	77850292	77851292	+	929.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24125.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	7.6054826243611	7.61681364723172	7.44506143015327	7.71393107219346	8.01301701190084	7.5942576373846	0.336138321202355	0.162652044251687	0.536188662408322
Merged-chr19-46075928-4	chr19	46075442	46076442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	95.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	7.48372219632326	7.68695469114516	7.13975948455388	7.53565013901058	7.55459349932762	6.95581404080849	-0.112945811580084	0.69841771200053	0.920332843065367
Merged-chr5-135774610-1	chr5	135774110	135775110	+	548.0	f1_balb.idr	intron (NM_029659, intron 1 of 8)	MTD|LTR|ERVL-MaLR	3691.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	2.8883579506627	3.03705798577727	3.37581922036085	3.01175399788594	2.99990102178349	3.18088986743631	-0.201881836332713	0.770105018687801	0.943335264488153
Merged-chr4-53030695-2	chr4	53030195	53031195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013454)	TTS (NM_013454)	18815.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.65321296703994	2.84222104776149	3.01163313774926	2.71257283350994	2.69936617331376	3.02725710215254	-0.116243356614101	0.876541513634863	0.97133542879415
Merged-chr6-39068865-4	chr6	39068402	39069402	+	696.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	-1316.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	3.61107210915498	3.49609727496114	3.38122366233709	3.37486640706445	3.52352680600078	3.61724655289138	0.00845960921851794	0.988446042180974	0.997390908272651
Merged-chr13-37772890-4	chr13	37772415	37773415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53123.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.82822042054576	5.63809725230795	5.4672103604074	5.17407177214593	5.38250071548222	5.27815588257224	-0.719396699719464	0.036460028120726	0.234938900322881
Merged-chr4-105306185-3	chr4	105305684	105306684	+	815.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148837.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.62696610570675	3.72754148632669	3.33673804224802	3.34660515376072	3.41075317902095	3.68490326553315	-0.352217705082141	0.56262729233193	0.865755360453189
Merged-chr2-170154662-2	chr2	170154162	170155162	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11987.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.50289603039574	6.54152617526471	6.68197254402406	6.70336989731415	6.88957368761766	6.64318860826161	0.293121125748147	0.261714399831286	0.659501265328941
Merged-chr10-19587849-4	chr10	19587344	19588344	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-4105.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.57123588308178	5.15485001609069	4.97499611693058	4.75841664215743	4.79414067752433	5.23049419610627	0.0256350251776073	0.953109445336793	0.989359300570295
Merged-chr16-21794347-4	chr16	21793825	21794825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-22.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	8.31675895468133	8.87607227294106	8.04094457925227	8.40523712389747	8.93430415208149	8.13426204687033	0.104967986745819	0.740463740214526	0.934528157499283
Merged-chr18-9958054-4	chr18	9957558	9958558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153552)	promoter-TSS (NM_153552)	-122.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	7.70554807102636	8.16948444507853	7.89578712517654	7.77227613255208	7.96947735512641	7.51715641092282	-0.237876120891228	0.355742705859229	0.742537446565912
Merged-chr7-135667487-3	chr7	135666978	135667978	+	987.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 7 of 17)	intron (NM_001316681, intron 7 of 17)	-15164.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	2.95842095857958	3.00581728914454	3.01636256779289	2.66785887189417	2.48507554914144	2.85286459914993	-1.78702794986061	0.0239810955263823	0.182080390232614
Merged-chr7-45924702-2	chr7	45924202	45925202	+	769.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	3.85331760503454	3.84392955458058	4.12314836466464	3.57308701617873	3.62617769068676	3.66623913799375	-1.04776296877532	0.0536644599291035	0.296974752712214
Merged-chr6-4600946-4	chr6	4600443	4601443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145398)	promoter-TSS (NM_145398)	-123.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	6.19146818104671	6.55572785896849	6.16445122517529	6.29376857652387	5.89481013351871	5.81392490271394	-0.507523504001011	0.115073591529412	0.452806365458211
Merged-chr9-124016795-4	chr9	124016300	124017300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5171.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	7.27465429223976	7.39048905563922	7.25271178652973	6.81562860176544	7.25425905875522	7.02247444540972	-0.387500979112286	0.130155764218531	0.482383895109151
Merged-chr8-106527439-2	chr8	106526939	106527939	+	738.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	intron (NM_007665, intron 2 of 15)	16587.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	3.39132475316529	3.06555819437062	3.16938052730525	3.02576275599857	2.95041734887529	3.35211282535689	-0.441451343142825	0.51718158409562	0.844527100635531
Merged-chr5-134102846-4	chr5	134102359	134103359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	3111.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	5.51602883631445	5.18208537257641	5.55616881328416	5.57548554868529	5.30168160385802	5.38828378084616	0.00539091600581883	0.987833017856095	0.99723749001283
Merged-chr10-118796737-4	chr10	118796258	118797258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72145.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.21864892911323	8.1291511191741	7.82944909819724	8.00785087291283	8.28508808169288	7.72459238339656	-0.0559915659041971	0.827371697155855	0.959445425237295
Merged-chr4-101071864-2	chr4	101071364	101072364	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	B1_Mus2|SINE|Alu	2826.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.96167414909713	5.24546420162118	5.01063322752111	4.9129175537496	5.24231006810798	5.21074671833055	0.101088502467565	0.790229384458993	0.949368241827272
Merged-chr8-11008081-7	chr8	11007564	11008564	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	214.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	5.99020617956154	5.86685650347653	5.39039676456584	5.31449408073483	4.78643884997818	5.22273798252501	-1.28578332231613	0.00095890725265397	0.0174439778484546
Merged-chr17-35222452-4	chr17	35221960	35222960	+	820.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-12550.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	3.8760784779577	4.04963630095465	4.06536773147533	4.37552728298061	4.18686464265316	4.27312139907014	0.798133493757479	0.0951233305479278	0.411148363215922
Merged-chr4-142085067-6	chr4	142084395	142085395	+	875.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145402)	promoter-TSS (NM_145402)	-591.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	6.55352888048553	6.81442419746264	6.77539545163922	6.96678399076418	6.99590847217666	6.58615264800558	0.241079569579567	0.376871194356579	0.759456015597158
Merged-chr11-55460733-4	chr11	55460233	55461233	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	475.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	6.76949375857497	6.67814444791815	6.9058565456485	6.62658945148028	6.81406188257761	6.72982205825135	-0.0830705309006116	0.745949992990029	0.936251303305737
Merged-chr15-57885989-3	chr15	57885498	57886498	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	6420.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	5.24929237380493	5.08469787003706	5.14341517959535	5.41316969172699	5.24344468188249	5.48320721553008	0.432604455339498	0.218090623142481	0.612263725849036
Merged-chr3-138525523-2	chr3	138525023	138526023	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035481)	promoter-TSS (NR_035481)	-668.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	6.05298515365555	5.90674715867347	5.81771067910613	5.48181022477156	5.7092319759033	5.17530908536191	-0.802696811959584	0.0208612154974019	0.165996131543049
Merged-chr1-64611657-1	chr1	64611157	64612157	+	577.0	f0_c57.idr	intron (NM_025964, intron 2 of 2)	B1_Mus1|SINE|Alu	5511.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	3.75648420339822	3.75029944181889	4.05106711426023	3.98532461224233	4.36480972560316	4.37917037115341	1.18959010011514	0.0208615549391582	0.165996131543049
Merged-chr1-191095761-4	chr1	191095251	191096251	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-2663.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.8076713136242	5.80087859535758	5.74143322291124	6.19968376927358	6.12987607737514	6.04969256132714	0.600342843737755	0.0397676339550509	0.247994100736856
Merged-chr2-34749910-4	chr2	34749422	34750422	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	5310.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.86402387747852	5.10329816988634	5.16353667640004	4.54508951744728	4.80500748048474	4.96536943888803	-0.590235466483005	0.143840947462864	0.506290928785533
Merged-chr6-120916901-4	chr6	120916379	120917379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-55.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	6.80572782226919	6.68860457256307	6.51881199520122	6.95224606511533	7.07097540053018	6.27138881115265	0.223537320312201	0.479344475219831	0.824178515809639
Merged-chr13-113483543-2	chr13	113483043	113484043	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	19301.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.68602056760002	3.05574372228056	3.32019530403575	3.31576698840354	3.29268395774287	3.89622654831631	0.524028832094138	0.455427713163197	0.810922709911692
Merged-chr10-7817176-2	chr10	7816676	7817676	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	B1F1|SINE|Alu	-15294.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	3.55276062105852	3.35767294905314	3.61789814039601	3.55048469330177	3.54022613988489	3.52919954346479	0.113951942979354	0.842333104194881	0.963014702903935
Merged-chr4-53218263-4	chr4	53217760	53218760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27936.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	8.03390680682991	7.87710233411702	7.57407775209542	7.58432989016786	7.55141371540455	7.32822227613387	-0.507953073538768	0.0392349329530509	0.245758830258767
Merged-chr6-82768742-2	chr6	82768242	82769242	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	5712.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.29675101864319	3.24281516858107	3.08077518952759	3.6645004874343	3.53903873367338	3.34487061446931	1.20940157769301	0.0564594075905499	0.306329837427913
Merged-chr14-32085565-5	chr14	32084978	32085978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104305)	promoter-TSS (NR_104305)	-192.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	8.339441468046	8.64076957616654	8.11190900545167	8.5312119837065	8.65716011928973	7.94191953712908	0.0460171041303773	0.869353718794643	0.969788171765313
Merged-chr7-27542604-6	chr7	27542109	27543109	+	867.535339	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 3 of 13)	intron (NM_001317355, intron 3 of 13)	10609.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	6.52614177401795	6.62148395897491	6.64194632786107	6.6947930870407	6.71633351983218	6.15650237085001	-0.0543980195111227	0.852478351543502	0.965385693881201
Merged-chr19-3708243-4	chr19	3707748	3708748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358258)	promoter-TSS (NM_001358258)	-45.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	6.89738656079681	6.85576117080721	6.77586278629134	6.8317974767687	6.88710569921737	6.45150438996429	-0.149906804037486	0.576622708222208	0.871643606244953
Merged-chr1-95667035-4	chr1	95666545	95667545	+	829.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	549.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.18330100674516	5.98111776787854	5.43849782124004	5.64239093043679	5.88372684810138	5.84863056303758	-0.215293490018392	0.542737429477987	0.857318248006765
Merged-chr14-66241436-2	chr14	66240936	66241936	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-27612.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.78653618960468	4.67290981037883	4.8346429959644	4.97635317505816	4.95441055315017	4.93672883617525	0.436525957225364	0.253752141863006	0.651117231535132
Merged-chr15-88491080-4	chr15	88490558	88491558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109244.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	7.95697107262651	7.98486142174181	8.00944954533852	8.17993071179479	8.32842238068432	8.04345751183236	0.299358915701881	0.162802311506734	0.536188662408322
Merged-chr17-65737306-4	chr17	65736805	65737805	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	35447.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.8445527994642	6.97747770578685	6.8381898619883	6.87536796192318	7.08423468650474	6.3643490263626	-0.100765483257649	0.733393300249896	0.932052212786391
Merged-chr4-135255026-3	chr4	135254566	135255566	+	972.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	17694.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.06049840510902	6.39957315750975	5.96802681387524	5.02056033163322	5.4156661557018	5.44332448702407	-1.56123113537348	8.43452738964407e-06	0.000345724214304189
Merged-chr6-33060349-4	chr6	33059836	33060836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025336)	promoter-TSS (NM_025336)	-76.0	NM_025336	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	6.03672106869354	6.60853351269775	5.91953250712498	5.97555771694562	6.07420504654277	5.74061512680012	-0.496110696551286	0.150796624368434	0.517849175420909
Merged-chr3-55817107-4	chr3	55816577	55817577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 39 of 57)	intron (NM_030595, intron 39 of 57)	-30028.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	4.10382127142899	4.00410359489979	3.98769524098548	4.37279195825718	4.16162340471164	3.95413002346256	0.411608774869843	0.404381784645245	0.779533860086219
Merged-chr1-39602637-4	chr1	39602134	39603134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25287.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	3.54257171130219	3.76708490122307	3.47741872801719	3.5886924156142	3.32786475617643	4.08482820709802	0.322728840586644	0.610262272547336	0.88548880861851
Merged-chr9-110887634-4	chr9	110887097	110888097	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7275.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	6.33565177112872	5.65167888411035	6.10485635610314	5.70332148043578	5.66590534533645	6.10282896861246	-0.405398233878569	0.254734982984096	0.651754308411513
Merged-chr4-41712619-3	chr4	41712123	41713123	+	719.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027278, exon 2 of 2)	exon (NM_027278, exon 2 of 2)	894.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	3.65520435571871	3.72792906179163	3.57001178184631	3.49883182599232	3.73584654196337	3.84656103889667	0.143838515017728	0.796577075449813	0.951433076782143
Merged-chr8-117262904-4	chr8	117262396	117263396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	5877.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.54602418932212	4.99665870371905	5.53714127745973	5.45172752417237	5.30589510538853	5.45985039753167	0.0482503863938778	0.89724916577059	0.9759638755172
Merged-chr2-152104882-4	chr2	152104394	152105394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-630.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	7.27977755183093	7.05336130811882	7.11191816420558	7.26037421364338	7.04392951508343	6.86357549379183	-0.123512855888231	0.628580094436537	0.893783616313365
Merged-chr12-103337892-3	chr12	103337419	103338419	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18082.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	6.89360017541882	6.88899007005324	6.87449025643564	7.48705013663571	7.3669951259703	6.99124014044775	0.635273035215513	0.0137172111990774	0.125069220847341
Merged-chr5-125389305-4	chr5	125388824	125389824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019639, intron 1 of 1)	CpG	693.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	7.99037676839495	7.58278438026389	7.60029294935139	7.99430232985049	8.03150575305046	7.57730576840181	0.211463327787017	0.41688106640673	0.787715500353601
Merged-chr19-15923632-6	chr19	15923131	15924131	+	836.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177420, intron 1 of 8)	MTC|LTR|ERVL-MaLR	991.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	2.88955716433599	2.40350028700587	2.7193034763885	2.5349694884217	2.39754288581196	2.33098448334469	-1.56064845974715	0.0768062576323297	1
Merged-chr18-39803654-3	chr18	39803153	39804153	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30156.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.3351325647742	4.42691295580556	4.12854988054687	4.39652052841287	4.21801888167403	4.29387254765901	-0.0241807881811789	0.958129485869524	0.990000537228272
Merged-chr7-127904114-4	chr7	127903627	127904627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009739)	promoter-TSS (NM_009739)	54.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	5.43915300885573	5.37058503761012	5.26485422355997	5.27796949590893	5.17460450890522	5.32858340274665	-0.219361261865825	0.522680764192634	0.847682942091387
Merged-chr19-47090328-3	chr19	47089833	47090833	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	292.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	8.1839018893355	8.51236197413117	7.7676825757294	7.93560317560845	8.38927834216099	7.71186140153741	-0.204030963402512	0.494934642344469	0.832153667472614
Merged-chr8-117337843-2	chr8	117337343	117338343	+	877.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-11327.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.77573399958133	4.73480904116697	5.29680518015914	5.27016984204823	4.72883630842664	5.1164326383471	0.221134174055359	0.609769821585626	0.885315715493415
Merged-chr13-20187875-4	chr13	20187360	20188360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	97353.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.081905045396	4.93357695393122	4.81620446807285	4.76627753500668	4.57488240640057	4.80527335098441	-0.552159193711942	0.164653677736895	0.539208350811795
Merged-chr2-154570669-4	chr2	154570177	154571177	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007891)	promoter-TSS (NM_007891)	-785.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	4.04471285211094	3.96687171141702	4.0201809895743	4.11879405840102	3.83399542970627	4.04097717610211	-0.0380917534453956	0.939044930372858	0.986603666382121
Merged-chr17-27933658-1	chr17	27933158	27934158	+	787.0	f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	B1_Mur4|SINE|Alu	24352.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.42843731573043	4.60482642078549	4.5682169450471	4.4295800557264	4.21870186253723	4.71018916012373	-0.201371606422955	0.655567116692847	0.90429384180742
Merged-chr4-125127443-4	chr4	125126927	125127927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 1 of 5)	intron (NM_153159, intron 1 of 5)	454.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	8.71539367836368	8.98148196686471	8.5570456688119	8.77409350622316	8.91547223590441	8.60120992860087	0.0078465853196422	0.972562925881977	0.993868590220018
Merged-chr11-94630926-3	chr11	94630429	94631429	+	823.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133807, intron 1 of 6)	MIR|SINE|MIR	1105.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	4.22224341928866	3.76216992026455	3.9219348155827	3.91063983328151	3.85018894649408	3.9416163541773	-0.267458678274097	0.611555419892991	0.886146894079858
Merged-chr5-120519801-2	chr5	120519301	120520301	+	814.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 3 of 13)	intron (NM_001177595, intron 3 of 13)	8609.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	3.84366050405507	3.63135322816039	3.89268881861726	3.55798714695585	3.55107572751554	3.71606198370474	-0.626315289561309	0.255283741561266	0.652364778963479
Merged-chr5-105696211-4	chr5	105695730	105696730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3739.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.67652141723344	6.69464240501362	6.56402226778607	6.7489131638633	7.06560491228242	6.96284969559537	0.44371371855407	0.0864258964773851	0.389422485294003
Merged-chr5-125180163-4	chr5	125179640	125180640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-926.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	7.1410210360593	7.12203080853383	7.29597580624156	7.394376879799	7.67055190651557	7.7128237031518	0.6133614430501	0.0103207202637071	0.102661863921403
Merged-chr7-36697488-3	chr7	36696961	36697961	+	869.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-657.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.8576432575825	3.49365844542865	4.08965833174311	4.63050204424412	4.36706336252043	4.6232412682708	2.0523419172264	0.000150096117927721	0.00397745152246171
Merged-chr14-103096866-3	chr14	103096354	103097354	+	980.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	2150.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	3.53717629938683	3.4935690827383	3.54549949764313	3.32142649989983	3.22587594073097	3.4557577645876	-0.75013376437021	0.205935440939519	0.596518913737799
Merged-chr1-88655321-4	chr1	88654828	88655828	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46863.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	5.58469849816468	5.48382421637656	5.44143500536217	5.09118860420126	4.67437868802872	5.23150664874566	-1.02384778605766	0.00711873286755204	0.0791189320801808
Merged-chr8-111234637-4	chr8	111234123	111235123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	24579.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	6.778135562815	6.69578206396541	6.53686985951919	6.79223413203061	7.0558180132815	6.18057887213532	0.10084571967691	0.754741807146966	0.939085277630849
Merged-chr3-95954048-2	chr3	95953548	95954548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	24791.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	5.25901627635796	5.226726026921	5.28480357655616	5.44771781820542	5.05430406652166	5.11636054729239	-0.0771743633959852	0.831749706215806	0.960478468368024
Merged-chr8-3251285-4	chr8	3250808	3251808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	28309.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.59050456611245	4.60216665575341	4.5139163209502	4.60923708542162	4.35195707573813	4.95164411766017	0.181161510940924	0.685374177862952	0.916264475254709
Merged-chr2-117329223-2	chr2	117328723	117329723	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	13654.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.58516209112256	4.76959672227444	4.46249795890842	4.9075568502428	4.66126145550588	5.03237257962133	0.56676317991194	0.179484867656945	0.561049508546492
Merged-chr13-52194631-4	chr13	52194119	52195119	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	97878.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.3693690756718	4.18774592730561	4.05741149128495	4.11831204952929	3.973870437783	4.47413142909684	-0.0607584941392823	0.903628531290247	0.977858102400597
Merged-chr9-104234495-4	chr9	104234054	104235054	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28376.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.76320091144786	6.7809284903835	6.35834608829119	7.27811063251628	7.11186521288873	6.55901402496991	0.570361465098676	0.0661643488443266	0.335715783806252
Merged-chr2-34751241-2	chr2	34750741	34751741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	B1F1|SINE|Alu	3991.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.77219583892865	4.33932677562469	4.60989531416959	4.5276523328393	4.55150707274121	4.55379241338261	-0.100938270100822	0.816953537510309	0.956754861188725
Merged-chr4-132962822-4	chr4	132962305	132963305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11290.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.60577616279137	6.42900303180772	6.3781748802348	6.32725530453844	6.78554803207236	5.9922099900594	-0.0789475988302716	0.809617377963849	0.954749848816598
Merged-chr4-84079824-3	chr4	84079329	84080329	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34950.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	3.80501771069619	3.77892304387253	3.7989880258819	3.08411019258094	3.05175129022046	3.14654763585355	-3.06518127075439	1.10033744968001e-05	0.000434536680175481
Merged-chr11-5745110-3	chr11	5744600	5745600	+	761.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	L1MB4|LINE|L1	-3924.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	3.99385482390489	3.92276654028131	4.00353465628277	4.36054873965817	4.58571814271181	4.31399563476026	1.28397704151127	0.00655726726706132	0.0745684153010303
Merged-chr4-139204794-4	chr4	139204273	139205273	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	10662.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.13789126407847	5.80466438199503	6.34668052065236	6.71518222318372	6.53255298411921	6.53208731151378	0.811231789948484	0.00663240064676972	0.07511484864794
Merged-chr14-50870489-4	chr14	50869983	50870983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	71.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.8286815214644	5.96907193791885	6.43378657560794	6.43047627658939	6.48811025962305	6.12118656429323	0.457171209637324	0.156769131256262	0.527613063058663
Merged-chr2-35460715-2	chr2	35460215	35461215	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	734.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.90639350619835	5.35901505998705	5.16721186734676	4.54853685348569	4.61899275462617	4.56110067317336	-1.30168289108349	0.00151114699354794	0.0248497073199875
Merged-chr2-72367394-3	chr2	72366894	72367894	+	628.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	81693.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.93258611290385	4.12938597653031	4.13356512688181	4.81742500796634	4.84427276669143	4.48789539582177	1.74489615502239	0.000155079832454136	0.00408633475685714
Merged-chr8-120321972-4	chr8	120321477	120322477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93747.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	4.12843001471806	3.93829284994148	4.03985999228202	4.35104296010502	3.99136930908072	4.1570134929649	0.382529160413332	0.437600557245713	0.800064171761167
Merged-chr1-13652351-4	chr1	13651923	13652923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	8086.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	5.84601858865821	6.0419003463247	5.92329187777835	5.97865300579157	5.86746533306817	5.52134602220957	-0.223670971354226	0.484689432199298	0.826994448591038
Merged-chr2-70963057-1	chr2	70962557	70963557	+	600.0	f0_c57.idr	Intergenic	Intergenic	55317.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.07514051248112	3.02692221109072	3.07257137933095	3.22642188035236	3.12934135860533	3.62582514359122	1.16630171386538	0.0805391084567965	0.375547578708641
Merged-chr15-53113970-3	chr15	53113478	53114478	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	232205.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.44389338580248	3.47585496370159	3.50087068768496	3.43733815840017	2.8328689949956	3.51911759356286	-0.649404164368315	0.377836799157114	0.760218641134828
Merged-chr11-22807656-3	chr11	22807134	22808134	+	890.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	52101.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.36546460062814	3.51652058134925	3.57108048214362	3.38487562527725	3.18845209059146	3.73869497249998	-0.134839289230348	0.829198378368758	0.959990063227229
Merged-chr11-121803805-2	chr11	121803305	121804305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26413.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	7.89674509620074	8.0016605581126	8.029137083319	7.82415705814832	8.07805937269373	7.81401862338485	-0.0828685979169363	0.709060731950915	0.923888590419226
Merged-chr4-126553266-4	chr4	126552760	126553760	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	3.55518800810492	3.30039646140443	3.1909501009752	3.193800228388	2.99771461102316	3.32206699072757	-0.788485566066602	0.231130156667449	0.62693690919749
Merged-chr12-91736423-4	chr12	91735930	91736930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50006.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.54930208569731	7.64056874636303	7.36990882699881	7.23027912853047	7.66701582385588	7.20265500653365	-0.195233251166511	0.454422961254865	0.81026069858344
Merged-chr8-128652685-4	chr8	128652163	128653163	+	825.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-32991.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.20747142285148	4.21583077578673	4.08330289691197	4.11601051106864	4.04251898329207	3.89738170669728	-0.42422837224555	0.381418804048976	0.76309439402037
Merged-chr5-105597956-2	chr5	105597456	105598456	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	78485.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.96787177439708	3.67734188402359	3.53030123789173	3.63616826187046	3.55045706427965	3.81651070094666	-0.264033168135631	0.644089400042865	0.900067122451665
Merged-chr2-79243476-3	chr2	79242976	79243976	+	683.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-11950.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	2.79354461048015	3.27165436771485	3.00069038376179	2.86489298522211	2.82704852353537	2.95310561269516	-0.757699900975928	0.295922085970051	0.692710429567209
Merged-chr16-90885965-3	chr16	90885478	90886478	+	796.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	48871.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	3.14329753422118	3.44522861038362	3.41534703846556	3.3284110466594	3.1528664831832	3.48567908326338	-0.0708290184413649	0.910909604606834	0.979996676367672
Merged-chr1-182281458-3	chr1	182281041	182282041	+	929.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007853, intron 1 of 2)	intron (NM_007853, intron 1 of 2)	654.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	5.58016333072555	5.3120271785065	5.15096825156209	5.11611821565723	5.02102498388067	4.79332665342218	-0.772582504564985	0.0430544008554523	0.260283925357336
Merged-chr12-77239687-2	chr12	77239187	77240187	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	intron (NR_045554, intron 1 of 11)	948.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	4.75356572799759	4.94765181798676	4.81758585305359	4.98184980251849	4.68396355423613	4.80670317408168	-0.0408290041092913	0.918224796666482	0.981747877135909
Merged-chr14-47178019-4	chr14	47177509	47178509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	11404.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	5.36063338106283	5.82080071424555	5.35426602737107	5.44052312004626	5.23773375620705	5.6476414221186	-0.187804576933408	0.61041174815332	0.88555733136329
Merged-chr10-17560159-4	chr10	17559695	17560695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163033.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.74009617637823	4.84456197703995	5.14652796599901	4.65364736051362	4.86836043532238	5.01839746929728	-0.134024648760095	0.742347771818756	0.935192080236037
Merged-chr12-108914212-3	chr12	108913739	108914739	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	19967.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	4.40180119219628	4.51137835818538	4.38662780641928	4.09794426434723	3.8096296939556	4.45341044448105	-0.819841399459811	0.103915810533608	0.429838276142397
Merged-chr10-61121957-4	chr10	61121458	61122458	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 3 of 14)	(GTTTG)n|Simple_repeat|Simple_repeat	25726.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	6.49078272864419	6.61273421104889	6.71005135953928	6.89720494605668	7.10586652045954	6.81494700377316	0.551984079212898	0.0338113937768542	0.224851169826262
Merged-chr3-81107050-4	chr3	81106528	81107528	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	70612.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.03443446063876	6.12705032777074	6.01376705346616	5.73725494470163	5.84457082077699	6.00696303185896	-0.351299638461409	0.237124670030042	0.633571046941742
Merged-chr3-95676967-4	chr3	95676488	95677488	+	933.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301705, intron 17 of 17)	intron (NM_001301705, intron 17 of 17)	10929.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	4.70164324149456	4.63861982828085	4.44928948464175	4.89404102645984	4.72930929636382	4.42487388581719	0.229791926451936	0.595930090394583	0.879748615455831
Merged-chr9-106270067-4	chr9	106269575	106270575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10986.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.31569634315873	3.25299975012775	3.25480781520446	3.30527835137804	2.82601941938224	3.21191654384455	-0.621895617812561	0.368480376860221	0.753422169745307
Merged-chr11-103981003-2	chr11	103980503	103981503	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	14132.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.62535637092246	6.44784965984579	6.95636449134009	6.4148136688099	6.56683725888773	6.48689259848452	-0.302987301165684	0.287233429590011	0.684545951100586
Merged-chr17-81433295-4	chr17	81432802	81433802	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305085.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.60959992534894	4.30589124701491	4.23572494173961	4.45682182567482	4.92117740089511	4.70133865386587	0.757965184280574	0.0991081375759396	0.419759234012969
Merged-chr14-61666792-2	chr14	61666292	61667292	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	15581.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.80614261625025	4.86304943536683	5.02824223614825	4.88891211704871	5.13754577706831	5.31109049094269	0.479179810084522	0.213809807322866	0.606900020244801
Merged-chr9-110692665-3	chr9	110692172	110693172	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	URR1B|DNA|hAT-Charlie	36169.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.30718945779904	3.27623928072585	3.38817838480087	3.38025460032315	3.25298311632317	3.17194067907059	-0.195198115781536	0.750840131985538	0.937654295396258
Merged-chr9-77750754-4	chr9	77750269	77751269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3766.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	8.3855404960116	8.71541123134077	8.46218636314168	8.13607593833575	8.33941179141686	8.23930545321364	-0.402604350800041	0.0676750570833779	0.340320674019776
Merged-chr18-82856608-4	chr18	82856117	82857117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125720, exon 2 of 3)	non-coding (NR_125720, exon 2 of 3)	720.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	7.3004533689032	7.41259247532422	7.24927453955657	7.34520741795976	7.99375947917965	7.23343192825227	0.37934722321877	0.193332102177818	0.58042547704774
Merged-chr2-121419170-3	chr2	121418674	121419674	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	intron (NM_007952, intron 1 of 12)	5272.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	3.94855168726681	3.99861402503041	3.86564910502734	3.75830670267683	3.95520830582522	4.03272651936217	-0.0733568320844375	0.885530953396146	0.973632007873161
Merged-chr16-49859679-4	chr16	49859190	49860190	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4036.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.48495246709294	6.53314880103486	6.86692946400699	6.57083029776375	6.68072733718198	6.1510941396247	-0.210242031788401	0.486027298584819	0.827641640456729
Merged-chr10-127311759-4	chr10	127311273	127312273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	13.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	8.29065054143081	8.28271296935356	7.91107013105599	8.27707089237315	8.61231572165699	7.90025601954405	0.177693696205549	0.511692560316886	0.841519675193282
Merged-chr8-24554652-4	chr8	24554130	24555130	+	953.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 2 of 9)	intron (NM_145949, intron 2 of 9)	21703.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	3.01238869952763	2.57831721195494	2.65663325562785	2.71499942432748	2.71090427572013	2.91764906819494	0.0737031625059391	0.924399781064008	0.982960139621551
Merged-chr18-76932136-1	chr18	76931636	76932636	+	557.0	f1_balb.idr	intron (NM_025409, intron 1 of 2)	B2_Mm2|SINE|B2	2109.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	2.61267471143475	2.47517866343007	2.51214344764064	2.73234967591591	2.71659536699835	3.00242079518727	1.62437211028298	0.040078944042878	0.249188431287439
Merged-chr10-8792571-4	chr10	8792066	8793066	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	93504.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.18434646472483	2.92001858325696	3.2807563886927	3.18740857345617	2.77532822371986	3.18660215971221	-0.319887264504171	0.655390573459769	0.904253611535387
Merged-chr10-21621791-4	chr10	21621285	21622285	+	856.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	28640.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	6.33972965509541	6.50763024498265	6.00288421567117	6.71190851291131	6.61736183379506	6.27361568391693	0.393148864865841	0.199130167327404	0.5874985981271
Merged-chr4-105153489-2	chr4	105152989	105153989	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3858.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.949014158784	2.52410183086043	2.49600270656689	2.74610333524822	2.69559045024448	3.06982952223918	0.853943829424198	0.309659495477275	0.705284189627819
Merged-chr11-96034848-4	chr11	96034334	96035334	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-51.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	6.39034258850406	6.62746770949533	6.43872597320969	6.84582640191961	6.81850314339315	6.53496272765028	0.406848332117714	0.133694971094791	0.488926137304149
Merged-chr18-68160048-4	chr18	68159518	68160518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Tigger6a|DNA|TcMar-Tigger	-67928.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	7.30103950702364	7.01088277001331	6.75003749967944	6.53133975698898	6.36511540461059	6.1036365434875	-1.09300236936832	0.000233106264642254	0.00566811983294935
Merged-chr2-23009284-2	chr2	23008784	23009784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	30957.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	3.50978259682941	3.50747701960066	3.91312292036042	3.75904693538102	3.78604762348385	3.52117020491607	0.173274411982559	0.764906683643484	0.942102569612401
Merged-chr10-117804845-6	chr10	117804324	117805324	+	804.347229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12119.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.79578168286826	2.82019949543348	3.19749305721569	2.88083600170805	2.64089051476682	3.16191693320025	-0.179872530325335	0.813388345986687	0.955940138311315
Merged-chr2-167658083-2	chr2	167657583	167658583	+	778.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	3461.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	5.7616400736562	5.56103832598135	6.18955016223342	5.74329232357488	5.66775417956334	5.98617094267014	-0.0953437154393927	0.783236873806188	0.946999720944293
Merged-chr5-147540936-1	chr5	147540436	147541436	+	579.0	f1_balb.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	110780.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.90982651056003	4.03438474637266	4.21406981004951	4.27423582039743	4.05678862378892	4.40729353761492	0.54698352391911	0.264313546773712	0.662221571944713
Merged-chr6-39527959-4	chr6	39527461	39528461	+	956.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	ORR1C2|LTR|ERVL-MaLR	29873.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	6.99580572585324	7.20436515600313	7.03671785487784	7.3831216513582	7.60878907098883	6.84365952460798	0.367413927724496	0.204036640919919	0.594262340917239
Merged-chr9-99183472-4	chr9	99182967	99183967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-43256.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.76486998673958	7.61441805671355	7.35752669307701	7.78110088006461	7.82505628274194	7.6622713161633	0.235941702634789	0.318930385286136	0.712972770717842
Merged-chr14-101510797-2	chr14	101510297	101511297	+	752.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	98394.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	2.57108003210975	2.22986120310992	2.43737690127209	2.16900102149064	2.22156676477875	2.10794967534384	-1.76543191478345	0.0619082860028715	1
Merged-chr8-70547218-1	chr8	70546718	70547718	+	545.0	f1_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7543.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.07282877203828	5.37029486867024	4.39902299831259	4.23469535190055	3.92858537039404	4.42275044628281	-1.99280378831189	0.000111168986813154	0.00309887740527601
Merged-chr5-142630514-4	chr5	142629997	142630997	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178398, intron 1 of 11)	intron (NM_178398, intron 1 of 11)	913.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	4.57488688453884	4.67266655112627	4.62358065345619	4.80711601304524	4.49361075697362	4.6898595756164	0.094205314941717	0.82097465091203	0.957917721861197
Merged-chr12-3234839-2	chr12	3234339	3235339	+	784.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-952.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	4.95484372402333	5.1036530208303	5.17163304769076	4.95662220921053	5.44034353401574	4.87697613529384	0.12092323820547	0.763554194574313	0.941793063578371
Merged-chr18-12640679-4	chr18	12640151	12641151	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2882.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	3.90022054476083	3.77668426594519	4.09718130321638	4.32736169462703	4.46222831919985	4.54937252842373	1.48684085810649	0.00209971885450208	0.0320517313270746
Merged-chr9-13311271-3	chr9	13310765	13311765	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64309.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	3.81644167116354	3.92557519098201	3.62049522317573	3.35428194451775	3.38909242840688	3.46754042199299	-1.44071499528814	0.0132187807031833	0.122122779860272
Merged-chr16-52181814-2	chr16	52181314	52182314	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150265.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.72835166449384	3.75953951616035	3.78758308933803	3.89866131486615	3.93666594759093	3.8057968071581	0.411684672278446	0.424912281555009	0.792848465017231
Merged-chr6-92437362-3	chr6	92436836	92437836	+	938.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134461, intron 2 of 7)	intron (NM_001134461, intron 2 of 7)	44056.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	2.51001450795638	2.47547874846704	2.5757546174181	2.61974048666414	2.60138694833084	2.77194099188094	0.831325414018659	0.278263102951107	1
Merged-chr11-54762846-4	chr11	54762366	54763366	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	24837.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	5.48643390096538	5.19813761349806	5.00902029679666	5.08115443396381	4.62052873906517	5.17790240911449	-0.590291400563773	0.153315602481179	0.522167928093566
Merged-chr13-23756985-4	chr13	23756517	23757517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178193)	promoter-TSS (NM_178193)	80.0	NM_178193	326620.0	Mm.261642	NM_178193	ENSMUSG00000069266	Hist1h4b	-	histone cluster 1, H4b	protein-coding	6.14240734323046	6.25192210196727	6.79217424202769	6.34124864337272	6.33694913098876	7.07516532489729	0.330567787804614	0.356329685620371	0.74323101460165
Merged-chr12-100168151-2	chr12	100167651	100168651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8498.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	6.39406703432164	6.61326533053633	6.54860261798857	6.41509355925462	6.44283591590148	6.52162549837899	-0.102984314213293	0.698669531657287	0.920439942142444
Merged-chr19-41331001-1	chr19	41330501	41331501	+	1000.0	f1_c57bl6.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	54069.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.78527047068035	5.84245119679351	5.48059230037352	5.89943193461799	6.16972455304322	5.90636450860342	0.498407416270882	0.120847671055564	0.464929397687784
Merged-chr5-115134933-4	chr5	115134424	115135424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175352)	promoter-TSS (NM_175352)	51.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	3.32773459485671	2.83087312967383	3.21570356939238	2.90976690237295	2.8407859686802	2.93699486902582	-1.14471202349356	0.11331698508386	0.449679497084025
Merged-chr9-65288386-2	chr9	65287886	65288886	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-5874.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	4.29724772428343	4.03026189620946	4.1623147677107	3.97679865841099	3.93878481739183	4.43624832883369	-0.119677181377049	0.814589213654662	0.956369939298364
Merged-chr6-129179966-2	chr6	129179454	129180454	+	620.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-661.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	5.57813209572952	5.28912709295699	5.40014930330399	5.66491623266792	5.628234849177	5.46380755247595	0.312485052558149	0.350808601899151	0.738815453164556
Merged-chr2-71275490-4	chr2	71274942	71275942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63496.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	7.65674283433644	7.76423498305458	7.28835305972473	7.55545648226202	7.9993682625655	7.35766022752719	0.122272615316113	0.666128662468657	0.908003108410333
Merged-chr15-101138845-4	chr15	101138340	101139340	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 10 of 11)	intron (NM_001277255, intron 10 of 11)	10318.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	4.72077236421747	4.31591835718786	4.60102040221501	4.93647541453908	4.79756094094057	4.66827490026289	0.595594093210737	0.163417182658245	0.537242865848567
Merged-chr13-93996226-1	chr13	93995726	93996726	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	-61570.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.3842264469008	5.84258857387116	5.84597142979173	5.33644508668866	5.3196069072085	5.63743212063594	-0.518589016981161	0.144661846480828	0.507498812534585
Merged-chr14-19771440-4	chr14	19770964	19771964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	20207.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.19182626724682	6.17899187481063	6.33738176031583	5.93563483152051	5.98800904797282	6.02901196818091	-0.42560524163704	0.134473905354966	0.490254933413278
Merged-chr2-59243629-5	chr2	59243163	59244163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	82813.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.47176011243429	6.40540398398175	6.28866239636068	6.48977168966898	6.61079461880118	6.08298350548656	0.0542976525594225	0.853980408125087	0.965878769929691
Merged-chr8-47691778-5	chr8	47691226	47692226	+	943.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-16567.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	4.52982807114525	4.94066206705	4.75750892596013	4.53633180718204	4.52347011944072	4.74743576204426	-0.370862791668293	0.383415539218264	0.764889316280541
Merged-chr17-33910998-2	chr17	33910498	33911498	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355704, intron 2 of 7)	B1_Mus1|SINE|Alu	1397.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	5.67454439588133	5.72546955741475	5.42894933991696	5.44928334701124	5.84263175967196	5.58177562787013	0.0382581714081966	0.910417156238763	0.97984424692051
Merged-chr10-94345732-3	chr10	94345220	94346220	+	861.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	33771.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.01983747843859	3.14807206848216	3.49487411842521	3.70333135022904	4.27314147366417	3.83607870003495	2.83175031949941	3.85843914802113e-05	0.00127401985963707
Merged-chr6-89311695-4	chr6	89311212	89312212	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-25987.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.20054863817773	3.99486463474844	4.22749566622086	3.62092898374036	3.72910641432352	4.12120288826553	-0.941750334966641	0.0794329902792003	0.372678897950477
Merged-chr7-81835618-4	chr7	81835115	81836115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6184.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	6.19777012003694	6.20600581929917	6.40113266133352	6.1858105387019	6.20935919123675	6.35041262208342	-0.0314500709631818	0.910316307158952	0.97984424692051
Merged-chr2-61631108-1	chr2	61630608	61631608	+	590.0	f0_balb.idr	non-coding (NR_149323, exon 6 of 10)	non-coding (NR_149323, exon 6 of 10)	38011.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	3.59125893948054	3.42440246225772	3.5801642047155	3.66988353221723	3.44725955496744	3.54302574210453	0.0803985382732405	0.888090358925245	0.97401529899353
Merged-chr19-16140804-4	chr19	16140301	16141301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7970.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.92969870305437	8.12756581054108	7.64058635889178	7.93757378340693	8.21122272618478	7.84199821257373	0.128588936638765	0.607905316247654	0.884805932590519
Merged-chr3-65943500-4	chr3	65943004	65944004	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14745.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.44805745007914	4.43175765367736	4.30705894876589	4.60405845323158	4.23575381319002	4.50684073585303	0.127268142132415	0.777427879420991	0.945098603144988
Merged-chr10-41519949-1	chr10	41519449	41520449	+	1000.0	f0_balb.idr	intron (NM_016898, intron 1 of 5)	CpG	449.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	8.2550238211885	8.26152025576899	8.00100598629144	8.32318200273497	8.18943366203349	8.45830126081185	0.198051364483835	0.369597269956598	0.754241195123084
Merged-chr9-103241896-4	chr9	103241458	103242458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11672.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	4.25664995494247	4.12937246127308	4.5926539212339	4.27912908787863	4.1151086947289	4.72854629412771	0.149417416715343	0.76610798351658	0.942366894267556
Merged-chr17-23706902-4	chr17	23706420	23707420	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19416.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	4.92383099986517	4.89577690144689	5.07619849960507	4.86154438065502	4.63929438263718	4.78601715569285	-0.452190966684487	0.246596188051355	0.643759270156384
Merged-chr4-145246365-3	chr4	145245829	145246829	+	988.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.7038548190295	8.01052377694469	7.82206965897172	7.90754970454403	8.07919179978393	7.74971429703412	0.103050606172306	0.660217235650302	0.905906890165946
Merged-chr2-52513021-4	chr2	52512518	52513518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	45593.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	6.34809418127511	6.38029620519201	6.33780359293156	6.12928377811973	6.29577358881574	6.45262997280859	-0.103663357852121	0.708634070026162	0.92375127577894
Merged-chr14-73435012-2	chr14	73434512	73435512	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49723.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	5.72892823731684	5.90468718441669	5.83599434778029	6.03647671648311	6.09579373559311	5.99386007102696	0.387154814223395	0.189798630857769	0.575873850510983
Merged-chr15-103367220-2	chr15	103366720	103367720	+	857.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010577)	promoter-TSS (NM_010577)	-429.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	4.8163401301731	4.5548028640191	4.82842806136781	5.09848692563552	4.7342731713742	5.06856526960893	0.526670077211776	0.197773129708548	0.58588388553079
Merged-chr6-122604503-4	chr6	122604029	122605029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008108)	TTS (NM_008108)	-2085.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	6.11830917475151	5.81989606236527	5.77185822918937	6.29841449548308	6.09495707450596	6.36515815587272	0.564953257517208	0.0651143592496303	0.332770809074109
Merged-chr19-41272147-2	chr19	41271647	41272647	+	773.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-8143.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.24645350433253	2.92240199018134	3.25131931738028	3.59362582986911	3.37059043792911	3.64738523940865	1.57679872317854	0.0167746063059438	0.143687609790506
Merged-chr17-33955279-1	chr17	33954779	33955779	+	1000.0	f0_c57.idr	promoter-TSS (NM_001357330)	promoter-TSS (NM_001357330)	362.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	8.03887630050213	8.21917606143894	7.812466121931	7.90228969774164	8.10348403597784	7.94167941477336	-0.0744770780018529	0.747972487241717	0.936880860325556
Merged-chr7-88128665-4	chr7	88128163	88129163	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-149422.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.83168378397382	5.58966850562267	5.90725626224517	5.6787297235118	6.02191262513427	5.94507543709593	0.209166370438009	0.514712307510969	0.843203472095285
Merged-chr7-139235035-4	chr7	139234525	139235525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-13457.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	4.93647248873409	4.84464636011964	5.16606727422905	4.5257142219236	4.22989904129609	4.56079447630023	-1.29689063291125	0.00245897149930996	0.0362527828435688
Merged-chr15-6339935-3	chr15	6339431	6340431	+	821.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40142.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.23279728013935	5.36029007924162	5.23946841680526	4.82697989510495	4.61060408834135	4.96885059554358	-1.04420218077913	0.00596470660632328	0.0695076441533779
Merged-chr1-191111369-4	chr1	191110871	191111871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12957.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.6322157799979	7.60880288636624	7.59999611635213	7.29694603269904	7.43631661358741	7.49237887509904	-0.299566418151857	0.179855734907596	0.561345475440548
Merged-chr11-115064897-2	chr11	115064397	115065397	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2858.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	4.1120358142861	4.20377639870452	4.45986777908736	5.2091191330947	5.18892676772266	4.82225721657519	2.01697061550303	3.29962404102144e-06	0.000154157842338749
Merged-chr18-63692439-4	chr18	63691949	63692949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016792)	promoter-TSS (NM_016792)	-90.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	9.00247133930025	9.41295498445932	8.79135736225348	8.92922905895546	9.07998158432181	8.78122990127118	-0.221505187323851	0.367965261403007	0.752923975674939
Merged-chr2-155276863-4	chr2	155276374	155277374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046364, intron 1 of 2)	CpG	510.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	8.41523233328684	8.15447573085077	7.93819266166984	7.96996008420598	7.62350773221465	7.59690489195035	-0.633613185335853	0.0119548945995044	0.113971456213973
Merged-chr7-19559426-2	chr7	19558926	19559926	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	intron (NM_199149, intron 1 of 12)	2972.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	2.15643731104938	2.22459653579315	2.36346785252155	2.09876645215363	2.2863171743711	2.1099107117997	-0.530553514751305	0.556796796737441	1
Merged-chr5-9059566-4	chr5	9059086	9060086	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41151.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.96124050164458	3.81852775138399	3.97854016466642	4.01750447384217	4.00172386625588	3.89843877058684	0.179457751276054	0.719647834126357	0.92793360927861
Merged-chr9-57644598-4	chr9	57644129	57645129	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1024.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	6.34077149849401	6.53300623873294	6.96821361429049	7.19515372189499	7.04767606688796	6.99998023257022	0.70521644299832	0.013638841385512	0.124585073723389
Merged-chr7-80642082-4	chr7	80641580	80642580	+	818.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040343, exon 5 of 5)	non-coding (NR_040343, exon 5 of 5)	6063.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	6.01887164818754	5.97989961388132	5.92581562461403	5.74018095963864	5.90211106450634	6.24151043186862	-0.0171716710766287	0.956241720381091	0.989823487833175
Merged-chr13-88821867-4	chr13	88821410	88822410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010103, exon 1 of 10)	5' UTR (NM_010103, exon 1 of 10)	438.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	3.40237101665135	3.25563467766565	3.26202286775897	4.03212802271578	3.55347818447413	3.5764763155206	1.5644863756563	0.0115551801900864	0.11134724183633
Merged-chr3-144688423-3	chr3	144687927	144688927	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	31908.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.24699776252729	4.73604081737365	4.5296862948758	3.99072949081942	4.13472240932932	3.94091912990631	-2.19243855805571	2.13098793647818e-05	0.000769931585837934
Merged-chr18-62175255-2	chr18	62174753	62175753	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4728.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	4.95493587495883	4.94738502206762	5.08782433162651	4.96346245180079	5.07315936507241	5.27743200687775	0.236263861709924	0.525248203841434	0.848918138904843
Merged-chr5-123136989-4	chr5	123136488	123137488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4359.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	7.32877209006798	7.14309575986097	7.32912056830186	7.3270295517737	7.57055998033045	7.24872760869424	0.19319934877724	0.427405419669145	0.79433448971393
Merged-chr11-53796068-3	chr11	53795561	53796561	+	938.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	25588.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.81466778398763	6.59467454475205	6.77926734797474	6.83999983990131	6.93949914486106	7.01974993463896	0.314032281068027	0.214202374893763	0.607432426267453
Merged-chr12-8359616-3	chr12	8359061	8360061	+	954.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	46128.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.33333111602474	3.42382475879286	3.69694053622239	4.02677065774398	4.08371661215235	4.06268559404106	1.9627449957646	0.000488413266068858	0.0103146931581364
Merged-chr2-160364593-1	chr2	160364093	160365093	+	551.0	f0_balb.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	2472.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.28387050140575	6.62432401707654	6.51398755093324	6.85198215028953	6.38476233008435	6.26382869730384	0.0786762362783475	0.798297702661525	0.951930937621884
Merged-chr9-22625096-3	chr9	22624570	22625570	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 9 of 22)	intron (NM_001360259, intron 9 of 22)	149355.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	2.27739564115332	2.33981984988022	2.19308771731024	2.33462818960659	2.17785035786936	2.52406036732792	0.497708268773289	0.569055468622496	1
Merged-chr5-142814305-2	chr5	142813805	142814805	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	3082.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	3.88594644281981	4.02495316367735	4.15363512738833	3.99668590943258	4.18745266687034	4.13035984301409	0.261518323685654	0.593247143321103	0.878436995890793
Merged-chr1-151756711-2	chr1	151756211	151757211	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 1 of 20)	intron (NM_001311165, intron 1 of 20)	1337.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	5.42004574809155	5.35910262684008	5.22206589287739	5.8366246988584	5.89625936728522	5.54544309544703	0.816852972278782	0.0146201507231296	0.130275594492415
Merged-chr8-75097009-4	chr8	75096520	75097520	+	633.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010442, exon 3 of 5)	exon (NM_010442, exon 3 of 5)	3402.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.82997855693101	4.66197826076593	5.0469568501829	4.45404625413609	4.6990084586843	5.17108953676105	-0.111122518688237	0.804271713369168	0.953639350937323
Merged-chr17-56303250-4	chr17	56302726	56303726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010931)	promoter-TSS (NM_010931)	-111.0	NM_010931	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	5.30003813991158	5.12240920497813	5.344493112904	5.46372358750681	5.04330837879193	5.11690563435714	-0.0682997164626773	0.853934869711163	0.96587152343171
Merged-chr11-100725640-4	chr11	100725107	100726107	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	MIR3|SINE|MIR	11757.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	6.94916546928992	6.93510383277806	6.78930204268863	7.04962162826956	7.25521800913266	7.13982597090322	0.388973574845633	0.110905028309101	0.444841551070303
Merged-chr6-124737192-4	chr6	124736700	124737700	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	MIRb|SINE|MIR	1509.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	5.95887992212677	5.90374722389524	5.96257161178978	7.1149490299332	7.47977600641151	7.05606041034965	2.07085738482545	8.95393519716727e-14	2.08111463655278e-11
Merged-chr10-119040015-4	chr10	119039488	119040488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10511.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	7.02780576693796	7.19312866009337	6.89464509771613	7.02191784006226	7.20492598304984	6.99543389308675	0.0487896205698622	0.845607336727524	0.963834884892227
Merged-chr2-29827244-4	chr2	29826745	29827745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026615)	promoter-TSS (NM_026615)	-144.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	7.19769901927034	7.4381428094226	7.73878898673735	7.65240330476826	7.64678879091278	7.43062721359512	0.166996308406129	0.515163640590809	0.843376573195867
Merged-chr7-143821767-2	chr7	143821267	143822267	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030221, intron 1 of 20)	URR1A|DNA|hAT-Charlie	1085.0	NM_001308095	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	2.36777403470775	2.57481163625475	2.54713881925195	2.54581409278807	2.57489202848691	2.74356835263189	0.705849851552329	0.372468767156868	1
Merged-chr5-108032001-4	chr5	108031494	108032494	+	783.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33680.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	4.31367551198605	4.40860372177914	4.45418447929102	4.75728814220822	4.64558079586563	4.08362644341419	0.365581963804822	0.446799758827282	0.806122541261987
Merged-chr7-88284142-1	chr7	88283642	88284642	+	688.0	f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	6057.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.82491335141231	5.68093452379867	5.72063108507009	6.24225173452648	6.36522702627811	5.98824169383097	0.823537733460413	0.00662697757463493	0.0750636468867714
Merged-chr11-121354429-4	chr11	121353897	121354897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025793)	promoter-TSS (NM_025793)	50.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	8.59031167754869	8.99283446993207	8.41783850516819	8.54371363399205	8.73445339765023	8.34610555027994	-0.193617233746375	0.441353527308562	0.802556876306087
Merged-chr15-85035926-2	chr15	85035426	85036426	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1136.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	2.85011748687115	2.95290668629954	2.98495773271053	2.85091329818546	2.96217138502219	2.99823307297715	0.0443951488489118	0.948268958086652	0.988083630162243
Merged-chr11-86840066-4	chr11	86839534	86840534	+	927.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32374.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	3.58670613087654	3.4712581600729	3.4381498629354	3.63909736607253	3.30017532206016	3.56485518175131	0.0057483694078043	0.99224763093012	0.998463428158586
Merged-chr4-40154991-2	chr4	40154491	40155491	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	11726.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.64903332271882	3.86556290712791	4.31168645656635	3.80028089725794	3.75255957570481	3.90242411799289	-0.448158353529611	0.423391631647171	0.791996108225749
Merged-chr15-98953347-4	chr15	98952884	98953884	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011653, intron 1 of 3)	CpG	117.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	3.95684355534801	4.02616415405667	4.02047888011484	4.01292527600515	3.83410029380872	3.78496071038052	-0.361292064773496	0.47478000933363	0.821664499521211
Merged-chr12-69198077-8	chr12	69197577	69198577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	352.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	7.37313821523484	7.62433426582391	7.29058876278347	7.21913130872972	7.19106676591756	7.34792522932324	-0.286244603259575	0.235819330710831	0.632194563753684
Merged-chr15-66476090-4	chr15	66475586	66476586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019457, intron 3 of 11)	intron (NM_019457, intron 3 of 11)	24824.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	3.27878445970662	3.42784512640835	3.21827555950325	3.20594702282737	3.07978320009653	3.11055527143687	-0.772855816936397	0.225487284340378	0.620422475032167
Merged-chr11-70651601-2	chr11	70651101	70652101	+	742.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027445)	TTS (NM_027445)	3049.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	4.36738433797589	4.36932394795058	4.90040912880859	4.47893176715106	4.50138293277119	4.83246723339514	0.120028751536747	0.796283302454377	0.951410019719943
Merged-chr14-55591677-4	chr14	55591157	55592157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-85.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	7.80593987681459	7.94414712973983	7.80589738816246	7.81506130788831	7.88288612659573	7.71485003054899	-0.0653985481815327	0.763143810702651	0.941711234953909
Merged-chr15-91168201-7	chr15	91167696	91168696	+	900.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	23811.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	5.73408945302629	5.97719337455793	5.80152283811064	5.99119047468188	5.95344368577886	5.70321271959399	0.091951669907673	0.767677094968264	0.942671231130219
Merged-chr10-62945339-4	chr10	62944830	62945830	+	975.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-1699.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	4.40832709391452	4.32182687213989	4.62257160482077	4.57583601351243	4.29046759887567	4.53072100648068	0.0425449989911304	0.923973274324126	0.982833948467092
Merged-chr14-21049065-4	chr14	21048569	21049569	+	706.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018829, intron 1 of 8)	B3|SINE|B2	3373.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	3.43566630966462	3.40932594586107	3.8240294587626	3.64529711328206	3.61466358967588	3.69812136484419	0.320495374692211	0.578935248655458	0.872437129840066
Merged-chr11-55461314-4	chr11	55460802	55461802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009720)	promoter-TSS (NM_009720)	-94.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	7.10957534735716	7.02107851727075	7.23333166619941	7.14962257138054	7.48285787667564	7.06738926100893	0.20527595865056	0.423731041736632	0.792159956139484
Merged-chr8-8690563-4	chr8	8690075	8691075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176849)	promoter-TSS (NM_176849)	-38.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	7.44498588174481	7.35749569797101	6.90869937616312	7.29214534067607	6.7144883069573	6.86091146071934	-0.428468149335261	0.14982373528868	0.516362231947168
Merged-chr13-70637775-3	chr13	70637280	70638280	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-146.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	7.42176105644909	7.16312023809312	7.27761397578352	7.31551218355234	7.10457909097374	6.96445442474245	-0.226912881371652	0.364557548453639	0.74990409323904
Merged-chr1-165460578-4	chr1	165460082	165461082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-119.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	8.19519696600058	8.33753083339761	7.96280057012483	8.13673754122284	8.45399484039771	8.08543820483364	0.0884299719241407	0.710938010631722	0.924511716032697
Merged-chr13-67779673-4	chr13	67779175	67780175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028402)	promoter-TSS (NM_028402)	-18.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	6.64546968079054	6.73643999746119	6.51283182278134	7.71206028384305	8.02508297282793	7.28321424549422	1.61317352176688	1.62434746198967e-08	1.40206124084271e-06
Merged-chr15-78447866-3	chr15	78447363	78448363	+	917.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19299.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	5.59671110276147	5.79570266996266	5.75016626537275	5.44437657792788	5.64246930042108	5.68316713665986	-0.227457785940914	0.479120947876938	0.8240495282712
Merged-chr10-94080725-2	chr10	94080225	94081225	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 3 of 20)	intron (NM_053072, intron 3 of 20)	44724.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.79335880479461	3.76202189323322	3.90427946559258	4.6566042143423	4.80428461034226	4.42140968016584	2.35232743452676	1.74004446031524e-06	8.79608230761797e-05
Merged-chr10-80798541-4	chr10	80797996	80798996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	130.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	9.25102033009861	9.38106056192482	8.92484305334514	9.00298971044584	9.17396522469262	8.88586503529636	-0.238845843645346	0.290066096420399	0.687733205116261
Merged-chr13-35955998-3	chr13	35955499	35956499	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11907.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.69844478670133	4.69249643532596	5.0902271240169	4.144217231594	4.29446408388749	4.30363271302226	-1.44631496762681	0.0014299771843793	0.0238574361879084
Merged-chr7-122356671-4	chr7	122356171	122357171	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	L1MB2|LINE|L1	67546.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.7260439143028	4.92305096654435	4.33360110089962	4.32908125428504	4.53770303663465	4.35548440750163	-0.677903945066605	0.141794583284617	0.502638933495778
Merged-chr3-138889418-3	chr3	138888903	138889903	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121195, intron 2 of 7)	intron (NR_121195, intron 2 of 7)	147195.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	4.32141475818077	4.64120628041044	4.0443193735927	4.03742204140159	4.01957405606791	4.0111551154846	-0.962067471573749	0.0558694351973221	0.304339375705321
Merged-chr16-42875627-4	chr16	42875129	42876129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-42.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	7.024386977883	6.74143704520064	6.56201265698163	7.26181506065762	7.02243428107052	6.62175227611544	0.315447183996829	0.291190499339701	0.688953904178097
Merged-chr2-158142712-2	chr2	158142212	158143212	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	3680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.27253142593015	4.44931153664592	4.61880052287606	4.40509985968907	4.40262425093985	4.56793624874842	0.0228482903508472	0.958737699381349	0.99015359851262
Merged-chr5-113908852-4	chr5	113908361	113909361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011779)	promoter-TSS (NM_011779)	-155.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	7.16955276910547	6.89063897864176	7.07601861726475	7.2770555461352	6.87124114424882	7.1463223837181	0.083409515104421	0.750547625679148	0.937564211523741
Merged-chr11-48790446-4	chr11	48789950	48790950	+	861.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	4.15817919538932	4.03528649157092	4.02505013075478	4.10701842423233	3.92076422671096	4.2323717441952	0.0203938570012901	0.966799669584371	0.992357576102835
Merged-chr1-171823369-4	chr1	171822844	171823844	+	975.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16353.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.31548917055462	6.13559824121185	6.33859877063299	6.0354025549952	6.18897449083765	6.41630612858228	-0.0782473016675024	0.787922115161141	0.948776766737504
Merged-chr11-58108230-3	chr11	58107609	58108609	+	840.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	3880.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	4.64274705501631	4.6022687031025	4.3266473713779	3.70308866723586	3.32394359233087	3.73799219808646	-3.14881213918534	1.34563118438851e-07	9.28418570402979e-06
Merged-chr4-155721786-3	chr4	155721306	155722306	+	940.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 2 of 4)	B2_Mm2|SINE|B2	-12998.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	3.46714892198424	3.57950181321654	3.61461895242636	3.29837070672581	3.4745542329511	3.68380301545183	-0.230799790280569	0.694362223341024	0.919210273513843
Merged-chr16-10981140-2	chr16	10980640	10981640	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	11981.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.38331055246648	4.31453613676868	4.81666247759284	4.19664757226746	4.00633457625508	4.56301378472134	-0.647329157235712	0.195432275613971	0.583096846154808
Merged-chr4-62846725-2	chr4	62846225	62847225	+	851.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118849.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	3.86044798863094	3.41530480588515	3.58529725818862	3.87421054085891	3.81996405800299	3.60103679789926	0.454993543486434	0.432853342247044	0.797550668598533
Merged-chr4-33285613-4	chr4	33285123	33286123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24688.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	5.11095963005683	5.14715174884615	4.96629976193455	5.0411489780005	5.05792467148603	4.79821938872835	-0.217868024246881	0.563055736445728	0.865762574483528
Merged-chr11-116061900-2	chr11	116061400	116062400	+	591.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172569)	TTS (NM_172569)	16061.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	2.36807441397067	2.47558395706269	2.83797498607132	2.19136686319104	2.22365904857831	2.74162306529295	-0.944783164453619	0.321061784342917	0.714703682591974
Merged-chr5-92278900-1	chr5	92278400	92279400	+	807.5	f1_c57bl6.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	-719.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	5.50778587887196	5.26123922470628	5.46178236712612	6.01747317527535	6.21448615853171	6.45628234930114	1.473885296968	5.59615398536676e-06	0.000243410758397489
Merged-chr13-20172416-4	chr13	20171928	20172928	+	844.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	MTA_Mm|LTR|ERVL-MaLR	81921.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.21971440982835	5.06869010822361	5.29904242092507	4.98629466259227	4.72097879710796	5.27269627939903	-0.415373113603376	0.290641673645671	0.68849503869996
Merged-chr13-100247176-4	chr13	100246663	100247663	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010870, intron 1 of 14)	intron (NM_010870, intron 1 of 14)	173.0	NM_010870	17951.0	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	5.64462314747358	5.6332300887412	5.75950962926639	6.18080199448	6.27261136152066	5.79552512573034	0.769994428964311	0.0146873983932461	0.130692871939388
Merged-chr19-9935098-2	chr19	9934598	9935598	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35565.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	3.23574572020333	3.12555596875645	3.1716827002711	3.3149095261293	3.06202293327682	3.06325691922808	-0.111112924041251	0.863920252548714	0.968269312109804
Merged-chr2-158138015-4	chr2	158137515	158138515	+	924.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	8377.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.77885019498635	4.62419597872151	5.20818359356504	5.33334533896965	4.82420773522751	5.44148044638781	0.708748566781543	0.103199510754223	0.428296315983601
Merged-chr13-41263498-4	chr13	41262996	41263996	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13652.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	5.64797448570602	5.67382438214741	6.05212352280545	5.75568554698177	5.55505420722179	5.94069042072696	-0.0792934216554802	0.81298102087097	0.955850910466599
Merged-chr12-16908143-2	chr12	16907643	16908643	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	B2_Mm2|SINE|B2	13165.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	2.60560345409122	2.9179988681464	2.76182425530408	2.63450824495393	2.49530193242023	2.58177495168864	-1.12770115955224	0.149774449096473	1
Merged-chr11-105506520-4	chr11	105506012	105507012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49777.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	4.57458515314038	4.537149254959	4.68057930949607	4.74106075434398	4.33781933091567	4.78335871946983	0.0731952938045228	0.866816504584536	0.969114221403526
Merged-chr1-185209992-2	chr1	185209492	185210492	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	MER3|DNA|hAT-Charlie	5824.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	3.00786089983893	2.56186824870056	2.89469839379942	2.54887272844198	2.58448633416337	2.90902008106557	-0.767206507260623	0.339252824089969	0.729122178214163
Merged-chr10-81546024-2	chr10	81545524	81546524	+	865.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-978.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	4.83011849442454	5.32952032997182	5.22866302764847	4.95492494967758	5.1114832378836	5.32205909433691	-0.0295423708592549	0.940228053474108	0.986792088790777
Merged-chr7-35116253-2	chr7	35115753	35116753	+	715.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3040.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.82583134158409	3.68224166649531	3.91356590987078	3.5278718151104	3.1317497864726	3.53028021715466	-1.47667008235003	0.0166969125563745	0.143317175571571
Merged-chr7-46845122-4	chr7	46844637	46845637	+	683.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	-667.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.11143045617695	6.40540642732581	6.58888562933206	6.49313697405215	6.49096899151883	6.47832158062416	0.184626917568956	0.517019659332485	0.844460030891516
Merged-chr7-28277713-4	chr7	28277202	28278202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-4.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	5.08960918466936	5.29443865925531	5.34436814230933	5.00298694343397	4.82841144775854	5.19476923526517	-0.499966291882824	0.182637951150082	0.565440922476101
Merged-chr17-71135279-4	chr17	71134777	71135777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48255.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.09507096239437	7.13078750694153	6.89415888381234	7.06163087456273	7.33189477713139	6.81502257295446	0.0763317841304083	0.776673263664135	0.944890351789015
Merged-chr5-28004603-4	chr5	28004110	28005110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66802.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	4.56577419359247	4.84499790651037	4.42150578660386	4.56352221051964	4.41306559545558	4.35086546188888	-0.455543954905765	0.304507052331229	0.700969682849711
Merged-chr6-108658152-3	chr6	108657661	108658661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2468.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	7.94712332181576	7.82523151866384	7.36204223308874	7.06422294748165	7.30988387265381	6.63724130219876	-1.02237626850371	0.00069843439004592	0.0136485036935042
Merged-chr8-70541141-4	chr8	70540653	70541653	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	1478.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	6.67897928419564	6.57409296174411	6.17227547024248	6.11645017367985	6.41440524526698	6.23318678716506	-0.38833182266918	0.196552853142802	0.584411999439208
Merged-chr5-67257603-2	chr5	67257088	67258088	+	652.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2977.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	2.25791075300689	2.03195667025335	2.3505110472055	2.49276225281968	2.36646172981069	2.4902061565711	1.59701955065557	0.085280060208469	1
Merged-chr8-121949547-2	chr8	121949047	121950047	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-945.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	5.23425825391224	5.09710308910738	5.08777179982724	5.5159288815718	5.59878404025226	5.25783904368207	0.658438480882175	0.0615225139795493	0.321804433450463
Merged-chr15-100682502-2	chr15	100682048	100683048	+	812.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	intron (NM_033612, intron 5 of 7)	5372.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	4.76536938605236	4.75058820234502	4.58830884856191	4.74250178587686	4.94879977997343	4.92753011638941	0.380926091897055	0.338053588643474	0.728000347830431
Merged-chr7-145292826-2	chr7	145292326	145293326	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8083.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	4.08496510407857	4.42443584378086	4.55298010404496	4.27909284652588	4.1736411770528	4.58017600132849	-0.0439102040589032	0.927481339022812	0.983584626679457
Merged-chr17-42926786-2	chr17	42926286	42927286	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-50362.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.15906602319487	4.10318826658944	4.33334095317044	4.34491273826664	4.22828727648938	4.40012508732366	0.34370367779828	0.454147809311794	0.810100393169515
Merged-chr10-79907763-2	chr10	79907218	79908218	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198107, intron 1 of 14)	intron (NM_198107, intron 1 of 14)	1220.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	2.33550088279216	2.40400755515807	2.61352634307393	2.33389878900537	2.41372509647306	2.43954402170346	-0.344617263899443	0.674507118879957	1
Merged-chr2-153076740-2	chr2	153076240	153077240	+	767.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 6 of 8)	(CA)n|Simple_repeat|Simple_repeat	10785.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.64590511432086	3.36220429436146	3.41040037820679	3.61985260277715	3.73872835114246	3.94711934644719	0.9968396534117	0.0869306630863595	0.390716070549873
Merged-chr17-8506251-3	chr17	8505751	8506751	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20550.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.81894026897974	3.67661075264343	3.70281960835338	3.13512641937977	3.01970350798118	3.28009216004269	-2.5202050243295	0.000139974209429636	0.00375345601618471
Merged-chr15-59457377-4	chr15	59456872	59457872	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	83174.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	6.601388624867	6.66950603376802	6.7462655189417	6.40874781476641	6.70940449720832	6.64805984707843	-0.114912125912001	0.664901268499918	0.907721942545399
Merged-chr11-98941987-4	chr11	98941488	98942488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	2277.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	7.33021211774185	6.78622424339716	6.88127748673344	7.25386978359715	7.04882246960024	6.83309680350102	0.0510823637093717	0.859296679535205	0.967267211164924
Merged-chr12-100445453-4	chr12	100444952	100445952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75370.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.4725871461532	5.64610938064087	5.44138060749442	4.96277307476268	4.57231974774838	5.09644843147476	-1.3412401859093	0.000492653824834578	0.0103857966700876
Merged-chr6-99435361-4	chr6	99434857	99435857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053202)	promoter-TSS (NM_053202)	-12.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.02504652185419	4.41438653695385	4.84243673742486	4.44619799075483	4.01560174962887	4.39353188637103	-1.22314058548397	0.0118081753874482	0.112883117835339
Merged-chr16-64884107-4	chr16	64883601	64884601	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	32100.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.13483200547698	3.37108616413386	3.2228197623568	3.25108954808209	2.97099642805476	3.40485962212289	-0.139617586808539	0.833182552805387	0.960974486074802
Merged-chr16-11464519-2	chr16	11464019	11465019	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	58871.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.21042458886089	3.31762031007048	3.3793076800075	3.21276370749281	3.24408240691922	3.3408777214293	-0.150939450676945	0.805319224033181	0.953840812813326
Merged-chr17-80480495-4	chr17	80480017	80481017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009231)	promoter-TSS (NM_009231)	-64.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	6.4638231487061	6.41927722693899	6.32457964201005	6.62639878825482	6.437774284258	6.30371037217407	0.0966864990641142	0.724176600878622	0.929235307407624
Merged-chr2-24367141-4	chr2	24366645	24367645	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-530.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.77493444846236	6.33936524447981	6.44105780781741	6.83314155622478	7.02144835276145	6.57495767393777	0.465358658259468	0.110886703570231	0.444841551070303
Merged-chr19-16406971-2	chr19	16406471	16407471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-28696.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.05875874442476	4.01405675805756	4.24339569072658	4.7808379742799	4.81865302446151	4.49480124254024	1.60143547472483	0.000400594994145849	0.00880420186816898
Merged-chr2-122452698-4	chr2	122452220	122453220	+	960.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 10 of 17)	ID_B1|SINE|B4	11900.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.37176954571631	4.41113814057098	4.61256109521974	4.0147089519892	3.97678325080389	4.56590804967549	-0.698002255319972	0.161802060449191	0.534949755287526
Merged-chr1-171845137-4	chr1	171844613	171845613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5416.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.78573439214162	7.65996817139309	7.374278309133	7.76079928595767	7.87715654288296	7.44263381985097	0.129077571800737	0.611981412143818	0.886473391147181
Merged-chr4-134097321-5	chr4	134096763	134097763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	8.08410673056114	7.87345130315846	7.88455734009954	8.18541179728125	8.57636141929486	8.01158148645381	0.473250347949255	0.0570883701106072	0.308095025305708
Merged-chr11-68852643-1	chr11	68852143	68853143	+	1000.0	f0_balb.idr	intron (NM_023668, intron 1 of 8)	CpG	488.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	8.8900080467705	9.11351708291013	8.67898205527056	8.74268151682054	8.8391163904829	8.54247717169519	-0.265223137207194	0.241642219605223	0.638749787436033
Merged-chr14-33276505-3	chr14	33276026	33277026	+	862.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 3 of 10)	B4A|SINE|B4	59703.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	3.03915414928224	3.14312655431854	2.9925631262112	2.91440792923117	2.81844724836368	3.18030712177266	-0.415418530493531	0.549341795888403	0.860273914502926
Merged-chr14-54227822-7	chr14	54227337	54228337	+	878.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26092.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	4.32106124198784	4.53392315751076	4.32911268639683	4.62227979252759	4.43444732598105	4.48565488014113	0.282309446057611	0.519277069889831	0.845725113262126
Merged-chr6-17646282-4	chr6	17645846	17646846	+	615.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	9336.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.80890468262641	4.81101955872646	4.82217075067861	4.8331231650651	4.89351065313976	5.25218823397415	0.400007120957319	0.310825150794259	0.706083680889152
Merged-chr16-44766247-2	chr16	44765747	44766747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	511.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	6.60137525967031	6.92677180441958	7.01703579651816	6.72235607336162	7.11996454309678	6.8699958293363	0.101320405065618	0.71588628962198	0.926485618982576
Merged-chr9-108306842-4	chr9	108306367	108307367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	70.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	8.48225833439079	8.38049598565959	8.28934225412655	8.37305071985642	8.3627380650011	8.21032095397202	-0.0960735686895883	0.643680439070129	0.899930470875364
Merged-chr19-12796772-4	chr19	12796267	12797267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	574.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	8.76341705147799	9.08205873368271	8.39409646260143	8.77574134746356	9.24094399772552	8.55954116501501	0.157004358367545	0.580854300863803	0.873107245217778
Merged-chr14-70391870-2	chr14	70391370	70392370	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 17 of 22)	ID_B1|SINE|B4	37224.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	4.3161163384917	4.0106512919795	4.09279098862857	3.66418324244268	3.68782386109214	3.70506965121662	-1.45999137294345	0.0057597491094645	0.0676941573824748
Merged-chr19-56721998-4	chr19	56721512	56722512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007419)	promoter-TSS (NM_007419)	-360.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	8.12308970156571	7.99562060359087	7.88676109773577	8.1013773836137	8.00199472961749	8.0855082465239	0.0745956374013078	0.727163443361295	0.930115108449853
Merged-chr1-156571674-4	chr1	156571165	156572165	+	833.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	12878.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.30601707681819	3.22278336567073	3.23335959963978	3.65769105935375	4.21817306842236	3.77531057640336	2.4227251435989	0.000136271611001542	0.00367668229838403
Merged-chr10-59589583-4	chr10	59589070	59590070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	27122.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	5.44246507189735	5.62478136754574	5.25789399554335	5.53326245656155	5.71536105560905	5.28833332636573	0.147629335491463	0.677673767759391	0.913075310378318
Merged-chr11-79340629-2	chr11	79340129	79341129	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	intron (NM_010897, intron 1 of 57)	737.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	4.97608423231993	4.79928014195199	4.61615507130777	4.9658783259319	4.67655831023209	4.55162237699335	-0.150457774248837	0.721441106790324	0.928490118228223
Merged-chr7-105633213-2	chr7	105632713	105633713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029802)	TTS (NM_029802)	358.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	5.65359606458087	4.90924746108384	5.44460424345114	5.48835203675113	4.96961057669715	5.39108769503858	-0.149657781116135	0.720942417796295	0.928324696220711
Merged-chr16-91453356-2	chr16	91452856	91453856	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-11748.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	5.05604479398067	5.05617827111337	5.04254413695922	5.08882747424871	5.46579743272012	5.21001830515059	0.45799709454832	0.211810772498293	0.604236512672024
Merged-chr1-80822366-4	chr1	80821889	80822889	+	967.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63836.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.59802611489195	3.50664170221252	3.50613879784118	3.54415441492711	3.31058932770996	3.6297666672303	-0.165178077803536	0.776994140403612	0.944960604705842
Merged-chr15-95793087-4	chr15	95792586	95793586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	2243.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.77361932800109	7.80191125500854	7.28884850723632	7.91014762594002	7.83397379301595	7.43971058416254	0.143054242398574	0.596649847807141	0.880020560968805
Merged-chr15-6360349-3	chr15	6359856	6360856	+	927.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-26392.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.21887521062944	3.16124664383924	3.39869660885248	3.08388875771417	2.93282385760686	3.25501419379887	-0.732186921543736	0.267589958240783	0.664804288943601
Merged-chr13-55040245-4	chr13	55039747	55040747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359758, intron 11 of 14)	intron (NM_001359758, intron 11 of 14)	-18862.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	4.55492108185383	4.87550266918096	4.95512024634759	4.79432513201791	4.95385035939258	5.14977256976421	0.372187385466619	0.360916044426805	0.746938274913623
Merged-chr19-4058428-2	chr19	4057928	4058928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144869, intron 4 of 6)	intron (NM_144869, intron 4 of 6)	1019.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	3.71984436189925	3.82698583135457	4.25129282436367	3.38774195040439	3.23380404689122	4.49908060091996	-0.210148795083207	0.866831026173501	0.969114221403526
Merged-chr11-83645232-1	chr11	83644732	83645732	+	641.0	f0_balb.idr	Intergenic	Intergenic	4146.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	3.36214886128707	3.53389978955073	3.47030671197095	3.29106188972294	3.07778715034015	3.2622515451258	-1.01034231292352	0.104658165882493	0.431742375443055
Merged-chr7-4085802-2	chr7	4085302	4086302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-22598.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	3.67030617531522	3.39283222112299	3.69009214215772	3.69124760161614	3.56348495273543	3.70878053728844	0.226895512763703	0.688446758443812	0.9172299553909
Merged-chr6-72379643-4	chr6	72379190	72380190	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	778.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	5.72062904138559	5.68691092663083	6.14392148905859	5.83352575450976	5.77990750293888	5.64514657455412	-0.170016342974139	0.60462512329779	0.88314896167691
Merged-chr12-21389638-3	chr12	21389132	21390132	+	956.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011739)	TTS (NM_011739)	-16000.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.22647856793849	3.22173057431015	3.3202629950659	4.00859835104438	4.23034610961866	4.13977280431445	3.34445012671479	2.08458062251046e-07	1.36042183872824e-05
Merged-chr19-3379205-1	chr19	3378705	3379705	+	1000.0	f0_balb.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-9652.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	6.0006907693511	6.07401652839858	6.60342197210603	6.3070106637892	6.32481461993059	6.33827715686605	0.136468354487842	0.661252592044256	0.906313637571144
Merged-chr10-128222100-2	chr10	128221596	128222596	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3714.0	NM_008600	17339.0	Mm.31625	NM_008600	ENSMUSG00000025389	Mip	Aqp0|Cat|Cts|Hfi|Lop|MIP26|MP26|Svl|shrivelled	major intrinsic protein of lens fiber	protein-coding	2.49960804636106	2.62060279896435	2.56480073526041	2.69677824175862	2.39412168122589	2.7017414313097	0.218990691656784	0.782861836907365	1
Merged-chr3-27859487-4	chr3	27858961	27859961	+	941.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36907.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	5.50471758471571	5.99449386870701	6.06751945617581	5.49239864280637	5.82778662151259	5.93315056657461	-0.200056852578934	0.570051407257223	0.869067544203064
Merged-chr1-87640511-4	chr1	87640004	87641004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	20192.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	8.09141984818944	8.15304688328785	7.51408424210394	7.68071736559113	7.89726475664785	7.69961966585341	-0.27621010261801	0.295613277261845	0.692574399499983
Merged-chr17-35834578-2	chr17	35834078	35835078	+	723.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011655, exon 4 of 4)	3' UTR (NM_011655, exon 4 of 4)	3723.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	3.1675174751147	2.90768943714348	3.20904111903803	3.04630124069745	2.91241926143222	3.16889589266428	-0.254375054886673	0.708139993105703	0.923620645882265
Merged-chr10-88372673-4	chr10	88372180	88373180	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6732.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	3.52591646598128	3.57079291447013	3.65680147350032	3.74205127396405	3.80326987480701	3.56421087860807	0.453495278480852	0.411584970394529	0.783993055982259
Merged-chr16-33658950-3	chr16	33658432	33659432	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 11 of 11)	(CA)n|Simple_repeat|Simple_repeat	-25534.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	2.62843179644425	2.72053372767631	2.82865830465121	2.74328422098373	2.57992288394205	2.95889709038804	0.199348313829703	0.791183769383022	0.949694766870106
Merged-chr6-128134733-4	chr6	128134230	128135230	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8848.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	5.41421577045605	5.10131249823275	5.05564160099424	5.60175419556982	5.40901442925451	5.26269287872115	0.450832557372795	0.216451493840013	0.609925696753694
Merged-chr14-66240547-3	chr14	66240046	66241046	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-26722.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.75021641250501	3.93832496350242	3.94179892468361	3.95075526869547	3.82482218434771	3.96222794070996	0.100060824410378	0.844733549435498	0.96373428957366
Merged-chr9-75195842-4	chr9	75195334	75196334	+	900.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 31 of 40)	intron (NM_010864, intron 31 of 40)	-36180.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	3.55823549934386	3.51082711312775	3.40862422507212	3.10572290553748	3.22234565309089	3.53294411648897	-0.796029402844601	0.20543770335878	0.596047563330878
Merged-chr17-86755321-2	chr17	86754813	86755813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	CpG	1449.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.21228423099241	2.20575566378846	2.3142009435474	2.1473489165666	1.86787266823309	2.12604394592295	-1.51341678051193	0.132046469549782	1
Merged-chr12-117469554-4	chr12	117468983	117469983	+	846.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46996.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.73135757495549	2.75086401963911	2.73629726086178	2.77375006426159	2.82164751680941	2.87045119507974	0.42397188523327	0.552045859927995	0.861546661145201
Merged-chr2-73497088-2	chr2	73496588	73497588	+	779.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-11335.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.7682895179269	5.78601207781298	6.02723822343301	5.91068602072679	6.11866086624377	6.04389500644498	0.30515805966903	0.312370689557242	0.707123550253801
Merged-chr3-34033986-4	chr3	34033481	34034481	+	887.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	13902.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	5.7916323032429	6.06942319837151	5.90528606588694	6.0905045208343	6.13980528088157	6.16875737431234	0.34851176290683	0.236824923022432	0.633237835240546
Merged-chr12-108939235-2	chr12	108938735	108939735	+	767.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	44963.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	2.25661696449347	2.22460589602304	2.48294537234572	2.14004916976481	2.21972756024192	2.67473263634733	0.244878933284311	0.787434272174591	1
Merged-chr8-72584468-3	chr8	72583974	72584974	+	703.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357280, intron 4 of 4)	intron (NM_001357280, intron 4 of 4)	12651.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	3.78968648647167	3.80815901588872	4.25148405227688	5.34014490623985	5.67797830629518	5.85992335643456	4.4639468459818	1.33747105877582e-16	5.03566931486962e-14
Merged-chr16-43955617-2	chr16	43955141	43956141	+	709.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	23409.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	3.66140957118928	3.61858096013194	3.65679913384933	3.52013591446679	3.67944760235463	3.72648369353666	-0.00392175323613063	0.994289657832241	0.998918571480046
Merged-chr8-122880128-4	chr8	122879606	122880606	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31732.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.53700452169622	3.50927200985261	4.02186788756877	3.78634553684493	4.02234999494873	3.64573565852955	0.426644489909671	0.466991117464155	0.817728681977829
Merged-chr11-51918058-4	chr11	51917615	51918615	+	921.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49516.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	5.69267165919267	5.29816562459863	5.74015535316403	5.08755476754937	5.33140063904245	5.49008374784389	-0.534652217642772	0.14302280401344	0.504863459882501
Merged-chr15-77932313-2	chr15	77931813	77932813	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3319.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	3.8340344129767	3.52733177338684	4.07305071662561	3.64533534115966	4.00743443299021	3.86184769134204	0.0857056682150522	0.880546770060801	0.972540920690587
Merged-chr13-55321726-6	chr13	55321038	55322038	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025596)	promoter-TSS (NM_025596)	442.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	5.57287762605352	5.51761885510393	6.03834523775107	5.83771067733643	5.73076788419521	5.75453988439642	0.106164870162836	0.751916616940429	0.938030338790992
Merged-chr3-38106196-4	chr3	38105691	38106691	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101928.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.94095242770163	3.86297530541765	3.59451328371145	3.61750098313335	3.78905347582326	3.87834038058158	-0.166202265311182	0.761919146318782	0.941355820818144
Merged-chr8-111325338-4	chr8	111324859	111325859	+	819.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 4 of 10)	L1M5|LINE|L1	12846.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	3.82170768004075	3.62806948297688	4.13782548208382	3.75049208110666	3.60012148089521	3.89833008441297	-0.400102626857352	0.475845668716281	0.82218949187564
Merged-chr4-119119017-4	chr4	119118526	119119526	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	10281.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	4.65653811216425	5.1593928382793	5.05192032865722	5.34639149813626	5.40896644170864	5.40406975975748	0.846306750007804	0.0267863322868866	0.194845453005268
Merged-chr2-91499911-2	chr2	91499411	91500411	+	596.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 31 of 37)	intron (NM_172668, intron 31 of 37)	-26851.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	3.77101498803356	4.00547615607595	3.74122810270034	4.38265415651644	4.19138596234995	4.3102460367565	1.2829175088321	0.011538983386485	0.111247255538202
Merged-chr2-52945830-2	chr2	52945330	52946330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87962.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.24697216404962	3.95980324331135	3.98829812853303	3.97293508871048	3.76009400513496	4.24048555152648	-0.233176192552426	0.656112311593283	0.904563844889502
Merged-chr6-86400234-4	chr6	86399734	86400734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	-3084.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	7.32258489162572	6.70783408237279	6.91539636666511	7.36077770076103	6.96672230854932	6.94493754342329	0.143726021514761	0.628281669926952	0.893577294752216
Merged-chr12-102387893-2	chr12	102387393	102388393	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	51920.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.9593140228788	2.93765431450366	3.22254058407247	2.81088348194524	2.63596414338809	3.13200544136729	-0.821282124650994	0.274142781698435	0.671638918221694
Merged-chr10-24643031-4	chr10	24642521	24643521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308329, intron 24 of 24)	intron (NM_001308329, intron 24 of 24)	47579.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	7.73824266412806	7.82370193391288	7.54451605891496	7.62412408277385	7.78512474439593	7.42237725059143	-0.123477888334881	0.605718724841025	0.883581756351046
Merged-chr5-114855404-4	chr5	114854902	114855902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1688.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	5.96907098144566	5.73000757136722	5.33478143839896	5.91914257590976	5.95358269683894	5.65358080789969	0.247054576314526	0.479922461218515	0.824391932626821
Merged-chr18-36743470-2	chr18	36742970	36743970	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010885, intron 2 of 2)	B1F|SINE|Alu	1117.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	3.40076523408746	3.20142059353532	3.40596048349578	3.24497351731207	3.48386785463981	3.58130307894918	0.404168767852087	0.509092234681981	0.840253633185588
Merged-chr1-40410053-3	chr1	40409550	40410550	+	968.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	-19520.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	3.09832592476889	3.15328887212019	3.17378122394149	2.82324505950094	2.95593491004676	3.35195233510599	-0.370467239689291	0.597569788604316	0.880433364120803
Merged-chr15-76871373-3	chr15	76870851	76871851	+	971.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007568)	promoter-TSS (NM_001007568)	84.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	5.45909827908973	5.58595547925223	5.33047932424832	4.80024697074581	5.08696714138552	4.64086934111282	-1.22075607857616	0.00200168195028287	0.0310102311895619
Merged-chr10-40127045-2	chr10	40126545	40127545	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	15209.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.77069661817352	4.97495320354269	4.98714277530836	4.82515590638527	4.96982676252322	5.08500921387979	0.106960352372723	0.780830920031159	0.946078518476608
Merged-chr16-33920176-2	chr16	33919676	33920676	+	972.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010580, exon 10 of 15)	exon (NM_010580, exon 10 of 15)	46862.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.99399109428558	3.82273581206473	4.2127291168449	3.73463356463009	3.71311894812805	4.27887196368568	-0.261924592626537	0.63811850836453	0.897380718500389
Merged-chr16-44172034-2	chr16	44171534	44172534	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1363.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.2753189671496	5.34970720823807	5.14095087074621	5.16950116272722	5.351508686011	5.30443170437735	0.0288381557452524	0.934277534610393	0.985707838096286
Merged-chr8-26962636-2	chr8	26962136	26963136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14700.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.12525197747637	6.48629194651937	6.24650093801784	5.67147061749992	5.59280485001483	5.52394231163532	-1.22463299822706	7.96667576084171e-05	0.00234071736125748
Merged-chr10-111774001-3	chr10	111773499	111774499	+	928.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	100377.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	3.01822097896438	2.81800983313126	2.93443326926778	2.74887259766345	2.58000092970843	3.1203370978452	-0.461957315421215	0.547421384889741	0.85926739735431
Merged-chr7-133709097-4	chr7	133708604	133709604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025392)	promoter-TSS (NM_025392)	191.0	NM_009479	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	7.1957248076605	7.18806654899005	7.36418126250191	7.29631743463013	7.29988649724858	7.28972155367737	0.0732564505276413	0.750655799703388	0.937588367655538
Merged-chr19-5951558-2	chr19	5951058	5952058	+	645.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 8 of 17)	intron (NM_001164057, intron 8 of 17)	12648.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.41879844606688	6.15596808316712	6.27637327483609	6.21712804810095	6.40653758151564	6.14758186184515	-0.0293824100383386	0.918336803963967	0.981755409456577
Merged-chr12-38594308-4	chr12	38593816	38594816	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045943, intron 1 of 8)	intron (NR_045943, intron 1 of 8)	20205.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	3.83334417519347	3.82670293306249	3.81520781152976	3.84383740166748	3.73710026369973	3.67353850100995	-0.227797141679234	0.663629545236731	0.907297207161427
Merged-chr18-6109039-2	chr18	6108539	6109539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	27059.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	3.9274660310074	4.28688298711781	4.31892738040228	4.07040924701389	4.0735589205418	4.38526115072992	-0.0260819752574836	0.958169598654873	0.990000537228272
Merged-chr2-163642938-4	chr2	163642423	163643423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	RLTR4_Mm|LTR|ERV1	-1927.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	6.18473185660543	6.41303051002523	6.2166392742782	5.9853804484639	6.46552748126906	6.08138622325309	-0.118272571772424	0.701718081720953	0.921463870335944
Merged-chr9-21146923-4	chr9	21146433	21147433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	2973.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	4.22344934664443	4.24223610202352	4.41400118077812	4.25208307278783	3.84520039386192	4.55775191893312	-0.139119696064142	0.78677451343134	0.948616671210731
Merged-chr13-16912443-4	chr13	16911936	16912936	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138654, intron 13 of 13)	intron (NM_138654, intron 13 of 13)	782329.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	3.3335509327631	3.51351787403218	3.34596846449241	3.34094266841748	3.43161809441264	3.77947313900854	0.443875849707053	0.466771474715169	0.817652165708111
Merged-chr13-38193040-3	chr13	38192542	38193542	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023842, exon 23 of 24)	exon (NM_023842, exon 23 of 24)	-11897.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	4.51576918680042	4.5860558737187	4.65966127926098	3.55755496247171	3.38943111234029	3.67515248006412	-3.61303302733378	3.22147177177648e-09	3.25701364746024e-07
Merged-chr4-131918803-4	chr4	131918241	131919241	+	866.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	1288.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	3.27628682767814	3.04232306005275	3.05273906427666	2.82188295064701	3.02452999598367	2.87787703131934	-0.991628932687333	0.160325928134997	0.532965919658045
Merged-chr1-55088194-4	chr1	55087694	55088694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008303)	promoter-TSS (NM_008303)	46.0	NM_008303	15528.0	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	8.36952963268404	8.36835977652205	7.95397984636483	8.23233552302134	8.04282877869564	7.91349398454788	-0.252430961258013	0.292095441211266	0.689330051945222
Merged-chr6-7845785-4	chr6	7845281	7846281	+	928.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	557.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	5.78707164960969	5.93681685092551	5.92471970793591	5.59483332897639	5.52634835842252	5.57697639530499	-0.582559509661461	0.0599458399915294	0.316978485893186
Merged-chr7-135758968-4	chr7	135758451	135759451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42572.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.20096062490306	5.23408479971986	5.31097293783017	4.92542045319489	5.34411335700905	5.00701261256998	-0.259444833428746	0.49007024591777	0.829980359087456
Merged-chr9-58582182-4	chr9	58581697	58582697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-43.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	7.12349231778238	7.04979454542773	7.08766055993456	7.01463059207683	6.99074379808662	6.9447378479868	-0.155000344588889	0.511456076209108	0.841401316538632
Merged-chr10-25360711-4	chr10	25360166	25361166	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	868.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	7.08529628824323	6.89292712598454	6.6518048926271	6.92221106331698	6.51624201999765	6.41564958363533	-0.396796908742458	0.17574360223901	0.555774586970482
Merged-chr2-153347484-2	chr2	153346984	153347984	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	1345.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	6.1957484548074	6.48889649872949	6.41294745606689	6.90698726826373	6.7084008377001	6.5812630251814	0.594529863181813	0.0314066881444306	0.214714296863181
Merged-chr3-18319633-4	chr3	18319133	18320133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76295.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	4.12040726724456	3.89556446844455	4.27502371073118	4.38779732676145	4.24751445209104	4.50723453911653	0.769971231980947	0.107742291548784	0.43845163570163
Merged-chr1-39650307-4	chr1	39649812	39650812	+	814.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170597, intron 1 of 3)	intron (NM_170597, intron 1 of 3)	870.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	2.35402388478458	2.38613691998089	2.53798590449882	2.46166758605894	2.1839545657526	2.48701916539689	-0.282651515192434	0.739231877830115	1
Merged-chr5-92500930-2	chr5	92500430	92501430	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	ID_B1|SINE|B4	4727.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.41669761200489	3.9726798014701	4.68877579327919	4.1674180059454	4.14344993010541	4.61007424330035	-0.175857902992171	0.736243966097374	0.933099240232035
Merged-chr11-97041518-4	chr11	97041032	97042032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357808)	promoter-TSS (NM_001357808)	-28.0	NM_001357807	107732.0	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	5.96449484471629	6.08288083047037	5.86384717240117	6.34216713495433	5.98477038591424	6.37561320092722	0.43775122674807	0.152071781490469	0.520007249500677
Merged-chr10-127675332-4	chr10	127674810	127675810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1755.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	5.64446326488881	5.47653313329984	5.95483747942682	5.94398810630488	6.25156108074937	6.015768620773	0.690842634876075	0.0335766031650597	0.223843086540653
Merged-chr16-8769320-4	chr16	8768827	8769827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30985.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.8343388224901	5.04647551672315	5.19865037186364	4.87261172229581	5.26287227003479	4.92086002560357	0.0323419240721948	0.935118492385856	0.985775370567048
Merged-chr7-80640723-3	chr7	80640206	80641206	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	4689.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	7.12130936344892	7.18620899727604	7.1760255950637	7.09157021970595	7.4246200702288	7.28058337238101	0.173826310363574	0.473043502083852	0.820602170733294
Merged-chr8-46896842-4	chr8	46896340	46897340	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-90047.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.42229865169054	3.4308842000429	3.25253005553466	3.16146306340519	3.07643767280624	3.69160729405888	-0.153885309637132	0.818621592047135	0.957000374759562
Merged-chr2-18821815-4	chr2	18821286	18822286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19968.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	7.45087478213208	7.68759635916531	7.36252078503295	7.41982609622794	7.81289150550777	7.56597123859901	0.148901620992775	0.551239658087536	0.861071364987379
Merged-chr17-71137210-4	chr17	71136748	71137748	+	954.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46284.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.75495423545281	5.78775626495019	5.65939711232985	5.64446555445745	5.84801933207336	5.35748824180362	-0.163961196476326	0.624503813827478	0.89205968496773
Merged-chr7-125484765-2	chr7	125484242	125485242	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	B1_Mus2|SINE|Alu	6800.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.81040199279376	3.83734359480961	3.99585023795227	3.89001958939012	3.92369235952269	3.96926815033855	0.152296986032814	0.762881746302353	0.941663714620562
Merged-chr5-139407869-2	chr5	139407369	139408369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1482.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	7.1517699949539	7.72806336992633	7.69425890555435	7.34760986204	7.7111667030587	7.71664835523214	0.0778661110187	0.778420476196966	0.945448867043224
Merged-chr5-112357764-2	chr5	112357264	112358264	+	800.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359853, intron 4 of 13)	intron (NM_001359853, intron 4 of 13)	-1731.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	3.65422648296299	3.85842409591999	4.03635984956505	3.73362016043085	3.91462572319785	3.81777830700403	-0.0766278066775922	0.886095464017539	0.973683443207102
Merged-chr2-167753456-2	chr2	167752956	167753956	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62279.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.39558196153733	8.18651258459378	8.36736010472059	8.15958713070415	8.10196935003526	8.01309630897385	-0.315023758997093	0.136309371143039	0.493336840191226
Merged-chr12-112594675-4	chr12	112594187	112595187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5903.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	6.18486637776692	6.17119273169032	5.92569090638422	5.95064291615138	5.98779979935574	6.20902689755045	-0.105532804828309	0.722280580014164	0.92872455507539
Merged-chr3-51358835-10	chr3	51358296	51359296	+	892.056641	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18152.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	4.03071059554493	3.84050180853052	3.68246904865378	4.32379806564693	3.99057078240589	4.02535994609072	0.757415853223202	0.151657240877129	0.519154798984001
Merged-chr16-43381464-4	chr16	43380960	43381960	+	865.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	38736.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	5.41504290785719	5.50055319221957	5.61872972758105	5.76960404295478	5.43164965491557	5.82968822248419	0.318901030936385	0.344887804568926	0.733373712840888
Merged-chr11-70588761-4	chr11	70588279	70589279	+	646.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	25898.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	5.77525253759505	5.67801557527407	6.10445475785764	6.25034727866765	6.22120321150255	6.0788625892828	0.585449052659019	0.0556430847876559	0.303543552023292
Merged-chr1-75478685-4	chr1	75478179	75479179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	792.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	4.55599420510043	4.44600432666173	4.71253801514997	4.70124497998592	4.33735158567714	4.49944284085038	-0.126841622022642	0.772132274652406	0.943680976839558
Merged-chr16-10963472-2	chr16	10962972	10963972	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	29649.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.61218169108724	3.5746030973162	3.7935895530247	3.87580709341898	3.42327217886154	3.86264728278858	0.241407020323751	0.675937622650093	0.912421384593547
Merged-chr5-134106055-4	chr5	134105567	134106567	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	6319.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	3.87042477375542	3.93656860483462	3.98617002778753	4.08662229383094	3.90226771670219	3.9573149088639	0.162521081955919	0.74426121998689	0.935908101256887
Merged-chr9-60743385-4	chr9	60742899	60743899	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	30278.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	4.15509653641285	4.10202381439808	4.17661591006786	3.66331571606885	3.55228621424413	3.46657493021145	-1.89996973524835	0.000602218299690558	0.0121861333367344
Merged-chr14-86847549-1	chr14	86847049	86848049	+	796.75	f0_balb.idr	intron (NM_019670, intron 22 of 27)	MLT1B|LTR|ERVL-MaLR	293675.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	2.64642526775242	2.94040929798372	2.92152448204247	2.57850087993655	2.53307458564569	2.69353465635156	-1.34617346418756	0.0831503675291699	0.381505377849687
Merged-chr2-121143481-1	chr2	121142981	121143981	+	627.0	f0_c57.idr	intron (NM_001290812, intron 3 of 8)	intron (NM_001290812, intron 3 of 8)	1388.0	NM_029475	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	3.74776775498272	3.31898018305404	3.59184722939679	3.61153336000183	3.36111655329453	3.71347260104829	-0.00337422932727124	0.995547262250332	0.998961028701257
Merged-chr5-96983393-2	chr5	96982893	96983893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14296.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	5.95081786846777	5.83480641646937	5.93871037374908	5.77823829258963	5.96802275631874	5.90515093686653	-0.0317161872233051	0.915568902357648	0.981103119476821
Merged-chr6-137756522-4	chr6	137756020	137757020	+	752.637512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 1 of 8)	B3|SINE|B2	1943.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	2.41730334191909	2.50403092854914	2.56560040148658	2.39327361035241	2.21190031981089	2.51501992100707	-0.773727575211173	0.357616032572341	1
Merged-chr1-173491281-3	chr1	173490780	173491780	+	632.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44677.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	3.74037431921746	3.61087080955935	3.74150618992777	4.90845814449493	5.19394778669232	4.46077671582125	3.52157943876413	3.52123079540569e-10	4.16777485098317e-08
Merged-chr1-191349802-2	chr1	191349302	191350302	+	759.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025864, exon 8 of 8)	exon (NM_025864, exon 8 of 8)	23837.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	4.43637265474929	4.38293754568198	4.74060311762229	4.25899912494656	4.14782571874447	4.24396363058185	-0.801327544160459	0.080029582711963	0.374148866069054
Merged-chr16-30977423-4	chr16	30976937	30977937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	103995.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.30397704055427	3.84946894701261	4.3438264305305	4.19258503847954	4.01577210605458	4.56648180137873	0.242564978046254	0.643849588772308	0.899990653857957
Merged-chr5-110176475-4	chr5	110176000	110177000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	4.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	8.03883269331847	7.89935026709978	7.6589406202589	8.01709517376967	7.97733147123314	7.73399030476973	0.0550237102892453	0.815513130481318	0.956404475440483
Merged-chr5-21564150-4	chr5	21563671	21564671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	20644.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	5.98524203892882	5.85898374057296	5.51282111850226	6.0289991754821	6.34301634802289	6.14722157649634	0.640521804638388	0.0464337756677778	0.272691934540697
Merged-chr11-114897510-3	chr11	114896998	114897998	+	988.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	RSINE1|SINE|B4	7457.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.67202255018523	7.68717948599023	7.88669676862957	7.65144586705949	7.89213202525607	7.78245155086101	0.0491826249217639	0.827753022652964	0.959510695872191
Merged-chr6-89282783-4	chr6	89282286	89283286	+	766.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	2939.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.51950440713154	5.78630669895897	5.93244111781446	5.48291286275229	5.39101917372139	5.78608708582278	-0.366843097498317	0.284746349928365	0.682457480121006
Merged-chr5-139792639-3	chr5	139792122	139793122	+	856.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	1086.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	7.77274249259767	7.89039993363877	7.53665338411622	7.35981142100839	7.53765650712181	7.34757924546858	-0.472928063332483	0.0464604829180777	0.272755998081786
Merged-chr14-33251472-2	chr14	33250972	33251972	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	34649.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	2.94080927885711	2.97813096393625	3.01196318823307	3.04820400673299	2.91653394886653	2.90232720716147	-0.0860110588419311	0.898808062479441	0.976432549466174
Merged-chr19-16123297-1	chr19	16122797	16123797	+	723.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-9534.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.45405988946639	5.05633247526006	5.5109613714712	6.14038149107755	6.15832278999572	6.03160220624439	1.40123566312289	2.2579186366565e-05	0.000810163406291134
Merged-chr18-60713299-2	chr18	60712799	60713799	+	938.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348101, exon 2 of 15)	5' UTR (NM_001348101, exon 2 of 15)	14267.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.13632926592606	4.01078427081002	4.38361674234578	4.05153265799532	3.82869209390513	4.48779828150473	-0.106817886249759	0.840297633701945	0.962819298477451
Merged-chr1-75400064-4	chr1	75399556	75400556	+	725.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173477)	promoter-TSS (NM_001173477)	-29.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	4.87413690334424	5.12323003844084	4.91097354920412	4.87146933109984	4.95329647696397	4.8242096672581	-0.196603051322177	0.608937219570372	0.885053989692691
Merged-chr8-71701122-2	chr8	71700623	71701623	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028189, intron 1 of 2)	intron (NM_028189, intron 1 of 2)	677.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	3.4281960156537	3.49790998683977	3.49648762344092	3.60573034551631	3.65474588115282	3.33623810520025	0.268538343645004	0.647014323011907	0.90115442718983
Merged-chr11-97436855-2	chr11	97436406	97437406	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-13254.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	6.91104955633012	6.8601404142397	6.71280983451313	5.56924094630329	5.72446631667157	5.69890068062233	-1.95722917997887	8.5323460656257e-12	1.39207735574232e-09
Merged-chr9-14501693-2	chr9	14501193	14502193	+	846.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_023153, intron 1 of 6)	intron (NM_023153, intron 1 of 6)	1074.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	4.82712477761366	4.66193025772521	4.66418241907398	5.05486367532293	4.66746789808824	4.77147713859865	0.267514587485572	0.514549053862324	0.843107848235413
Merged-chr12-79744308-4	chr12	79743833	79744833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	180400.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.55250193410868	3.06393072888596	3.25580852702484	3.14469697949553	3.00617479272898	3.15245957278167	-0.883700825955089	0.189199324910396	0.574868493270401
Merged-chr12-111039221-4	chr12	111038747	111039747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198023)	promoter-TSS (NM_198023)	-551.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	7.87656064950267	7.66031727720057	7.58036414602564	7.96327946977916	7.75352605936513	7.57766210657529	0.0899591787891583	0.708176962244817	0.923633792195158
Merged-chr13-35880347-2	chr13	35879847	35880847	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	26000.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	2.3096058551912	2.24135635868352	2.50953092729703	2.18048359513977	2.31642072594019	2.26669360136835	-0.64421331352001	0.456284809735818	1
Merged-chr19-3767274-2	chr19	3766774	3767774	+	862.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167886)	promoter-TSS (NM_001167886)	-147.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	5.41739141622947	5.18745593370433	5.2819324873381	5.35443464087347	5.33808928677006	5.46614673516549	0.163651212325404	0.633084914771	0.895894991211847
Merged-chr6-86526228-4	chr6	86525734	86526734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-45.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	8.60234650046029	8.4270494309896	8.1451354718552	8.60932748970654	8.48537893267092	8.05377141708341	-2.59052105955335e-05	0.999919112832209	0.999986582743456
Merged-chr6-134425380-1	chr6	134424880	134425880	+	1000.0	f0_c57.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	10952.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.92228149186134	5.79645494873065	5.99500724948964	5.41875433451607	5.73064703189245	5.82535296575103	-0.42484032231421	0.187364107851632	0.572271506774537
Merged-chr11-86671234-4	chr11	86670734	86671734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356531)	promoter-TSS (NM_001356531)	41.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	8.28648043418221	7.87662909793976	7.68487914022473	8.16128651407304	8.5345583562005	8.13832578428514	0.44283999860673	0.0964307411444666	0.413973503513996
Merged-chr5-135473251-2	chr5	135472751	135473751	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B1F1|SINE|Alu	71871.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	7.15465034457392	7.19756134516872	6.77527679073571	6.80006098541093	6.86875536030592	7.10149312575609	-0.21650060352905	0.417811828134477	0.788328494227065
Merged-chr14-120326616-4	chr14	120326144	120327144	+	748.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	B4|SINE|B4	20192.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.31712163157692	6.79161027477049	6.57989876499938	7.42732151205244	7.40709474022229	7.13493040626639	0.580701834840263	0.05269360828556	0.293760112235557
Merged-chr9-108569873-4	chr9	108569375	108570375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026378)	promoter-TSS (NM_026378)	-17.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	4.98181581577269	4.72778189048461	5.06792049240187	4.51670395794616	4.59217859165688	4.58392853193314	-0.839434306153468	0.0410331513629984	0.25274161363627
Merged-chr11-80385379-2	chr11	80384880	80385880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	B1_Mus1|SINE|Alu	2101.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	3.69454469219226	3.42299670880952	3.63841644997666	3.79064011910239	3.62456312423651	3.54530254124045	0.245343303338388	0.665475014951384	0.907854806295134
Merged-chr14-63134604-2	chr14	63134104	63135104	+	957.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 3 of 9)	L2|LINE|L2	12142.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.83841265602706	5.0286436525269	5.25551620383661	4.81586033951564	5.2196050636346	5.25824929926699	0.146510021987882	0.712316000122352	0.925030273405448
Merged-chr5-146778471-3	chr5	146777948	146778948	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	16508.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.24975453916199	5.1873930182248	5.47441764233117	5.90003190565936	5.55571913770943	5.82470236334396	0.878339663350864	0.0100063930065836	0.100411474830175
Merged-chr16-90221867-4	chr16	90221353	90222353	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1111.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	7.14581045704789	7.44532666308029	6.91367768252815	7.02019341072001	7.20437944969478	7.1614525533448	-0.0978691742147411	0.711895714567674	0.924889808252387
Merged-chr15-102234063-4	chr15	102233565	102234565	+	881.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011244)	TTS (NM_011244)	-2130.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	4.14583767955195	3.88610597070582	4.19266909252206	4.57631047046162	4.3147889360403	4.84755397522888	1.35304465229299	0.00559729912692939	0.066371867562564
Merged-chr16-76304869-4	chr16	76304374	76305374	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	68175.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.0312460518192	4.03784053032088	4.03037621251463	4.09774475560002	3.86357623408446	4.0511954327646	-0.0924927303221173	0.850853495639144	0.964981271430729
Merged-chr7-25298183-4	chr7	25297656	25298656	+	953.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008776)	promoter-TSS (NM_008776)	-170.0	NM_001357350	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	5.9138583215475	5.92501057785186	6.21488059645896	6.28537855420847	6.53930793820873	6.44476263463739	0.698030431847399	0.0159878542456397	0.138835042378542
Merged-chr2-157078614-4	chr2	157078113	157079113	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164663, exon 1 of 15)	exon (NM_001164663, exon 1 of 15)	652.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	6.90752923127878	6.760653305386	6.87393776483508	6.86896466568734	6.68148510498474	6.7845817441508	-0.108506613650136	0.665510215786589	0.907855843812957
Merged-chr16-16303450-4	chr16	16302971	16303971	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038046, exon 1 of 5)	non-coding (NR_038046, exon 1 of 5)	506.0	NM_198246	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	6.56752503861704	6.75839338383706	6.93892361105685	6.57138661778412	6.33917505554248	6.63289950608715	-0.388691716563153	0.159544654428897	0.531845342963809
Merged-chr2-148393945-2	chr2	148393445	148394445	+	730.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1432.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	3.02312536596397	2.97464720991524	3.06683503020965	3.13925287798558	3.10303042957391	2.89331657616149	0.157449584632426	0.815155674215452	0.956370078970016
Merged-chr7-45015585-2	chr7	45015085	45016085	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 1 of 10)	intron (NM_001008422, intron 1 of 10)	664.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	6.10534883472717	6.19918530478493	6.45517927707574	6.44413527740052	6.42231494842863	6.69269078683432	0.436768034585397	0.125752793813469	0.474428788996618
Merged-chr12-12224501-2	chr12	12224010	12225010	+	900.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37629.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.27237826041925	7.37254146531628	7.20289073168506	7.7245590427054	7.8266942137032	7.59749253878415	0.637406480430835	0.0053259309079374	0.0639111708952488
Merged-chr11-115642119-2	chr11	115641619	115642619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13824.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.547742791097	6.11297499095701	6.05937757284958	6.55541497917004	6.58060074204493	6.69324825228714	0.550007438285436	0.0634385137472292	0.328107400042233
Merged-chr3-65586462-4	chr3	65585942	65586942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57028.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.10807481336079	3.9223054977334	3.97005240447713	4.23103020807267	3.94931858984775	3.83043630991997	0.0420907394437832	0.934455955574571	0.985708863052331
Merged-chr8-70905310-2	chr8	70904810	70905810	+	632.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173013)	promoter-TSS (NM_173013)	-664.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	5.51397176315411	5.50972828618089	6.25947110444731	5.99645181127672	6.11183370679214	6.42350751895576	0.669407606114294	0.0700231498931276	0.346464069471806
Merged-chr9-120576806-2	chr9	120576306	120577306	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	-525.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.59848018027489	4.75226210612971	4.7748276006414	4.67332186777198	4.65996504781854	5.11009562084048	0.253846523709614	0.544819916585647	0.857895653540487
Merged-chr4-46602184-4	chr4	46601682	46602682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164804)	promoter-TSS (NM_001164804)	-253.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.35155064768268	5.52969915213393	5.44438755479449	5.14685540752209	5.19742498788096	5.1964146124966	-0.52639262384092	0.124523803581353	0.472173562176323
Merged-chr16-22011312-2	chr16	22010858	22011858	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	tRNA-Ala-GCY_|tRNA|tRNA	1874.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	4.64520922832433	4.57771058567535	4.58062506506505	4.10097617328542	4.35356361802027	4.10522742817293	-1.03179933390143	0.0246439375293368	0.185360057910944
Merged-chr9-21529821-2	chr9	21529321	21530321	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	B1F1|SINE|Alu	3644.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	3.2144150235972	2.83429527851936	3.26661824423281	3.35477073160719	3.18895483012618	3.39274140012061	0.817302702469546	0.231838537674421	0.627997299394922
Merged-chr1-135746286-4	chr1	135745768	135746768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 3 of 5)	intron (NM_001360782, intron 3 of 5)	17101.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	6.68687669241195	6.49520383393592	6.00507187849367	7.08908955015604	7.06232574563263	6.9787031231953	0.939691717223938	0.00163349289986431	0.0264383733149017
Merged-chr8-13600315-4	chr8	13599825	13600825	+	973.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-37864.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	6.42158476793841	6.20895086238569	6.14633210797975	5.96739756104403	5.91971032999698	6.005662355965	-0.526353945876927	0.068831158406978	0.343250552206556
Merged-chr15-96709863-4	chr15	96709361	96710361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10133.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	8.25799135287047	8.27528900397753	7.57155217476831	8.0324620256151	8.18908263616673	7.74626798897021	-0.106876780501626	0.705299108970223	0.922756484933722
Merged-chr11-59527517-3	chr11	59527056	59528056	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14013.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.6774068527999	6.396614541561	6.82038069903857	6.33385192763446	6.78265131911342	6.80717812509163	0.0356757872042581	0.904140114662204	0.978051100634591
Merged-chr18-65682583-1	chr18	65682083	65683083	+	1000.0	f1_balb.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-15685.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.27791693666711	4.6209770507613	4.9730280366534	4.70811045397955	4.72921631278427	4.51561243717968	0.0340690836923639	0.940853560156285	0.986888338850358
Merged-chr13-64312715-4	chr13	64312261	64313261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-51.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	7.46086819652834	7.64901891740495	7.44939535475983	7.45568951525065	7.36489009666994	7.38950745016197	-0.180989510144809	0.42689454319313	0.793904265858508
Merged-chr5-140992461-4	chr5	140991967	140992967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175362, intron 1 of 24)	L1ME3|LINE|L1	8129.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	4.08819885065309	3.83853733901059	3.99572489613622	4.40661081778565	4.56668047150801	4.21565497687769	1.21128641138734	0.0125131411890558	0.117702176357558
Merged-chr3-136795017-4	chr3	136794485	136795485	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	124919.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.95087392680053	3.94853858646058	3.51614087671507	3.64077484169204	3.49583437405578	4.00485046505224	-0.328330943751834	0.581306920538618	0.873278833301446
Merged-chr19-46602852-2	chr19	46602361	46603361	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	3755.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.95469149237577	3.85623681020438	4.43868239613571	3.96159871270527	3.81320049512464	4.04702225037899	-0.467258243295078	0.382193721562525	0.763819347060188
Merged-chr5-64919025-3	chr5	64918511	64919511	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13688.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	4.38235906800504	4.59094793377818	4.58834604972341	4.64152054809376	4.29229381353788	4.6542808325133	0.0213011332812926	0.961642098708092	0.990648883228567
Merged-chr14-31669998-4	chr14	31669508	31670508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28951.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	4.65101792806812	4.81944700672135	5.01987671133457	4.16973016237543	4.24515687459845	4.18207309132198	-1.58601940679038	0.00044084682148982	0.00952778761624024
Merged-chr16-91414567-2	chr16	91414067	91415067	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	8332.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.93547479717439	5.87818403966642	6.12712993753327	6.12228375172888	5.99436447051877	5.81654078010999	0.0232674284848067	0.938738113212641	0.986515091506254
Merged-chr3-19217993-2	chr3	19217493	19218493	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 6 of 7)	intron (NM_001356295, intron 6 of 7)	29698.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	3.48144769773271	3.56751896484436	3.76358226865423	3.61110175150757	3.95263047820081	3.92909470592253	0.795524283359592	0.154139202380129	0.523280895619982
Merged-chr1-144319596-4	chr1	144319120	144320120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70516.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	8.23968393840994	8.09378358458047	7.75341886285008	7.77117275720941	8.1480496445957	7.72807098814563	-0.208417669188702	0.418726497784257	0.788755230826602
Merged-chr8-126692420-3	chr8	126691949	126692949	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99013.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.1143107820277	3.08718078305521	2.98029236954088	3.09380106610485	2.94638790234792	3.22856985567147	0.103103232771885	0.877074045757248	0.971489168500291
Merged-chr12-85366605-4	chr12	85366101	85367101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8116.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.926859253313	7.13111571933316	6.89870586867465	6.93578563681088	6.97183462857187	6.8539067326891	-0.106728032473228	0.66639264218411	0.908149841255908
Merged-chr2-71275938-4	chr2	71275398	71276398	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63952.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	7.12507739079449	6.91340252276389	6.67063822833927	6.78294241745524	7.00979333075948	6.77884164301654	-0.0882688901709168	0.743912883618662	0.935814517574594
Merged-chr1-132384455-4	chr1	132383948	132384948	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5870.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.34054303475098	4.23489880560362	4.36473767486727	4.28534402277982	4.1518379996681	4.47276375274205	-0.0328936235653078	0.942686055288991	0.987202156853573
Merged-chr8-70506586-4	chr8	70506103	70507103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151646)	promoter-TSS (NR_151646)	149.0	NM_001357209	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	6.82654573756999	6.63943898885206	6.97365164716305	6.62305758640077	6.28889319846287	6.60864109823863	-0.48544005062024	0.0807770831723521	0.376037794371997
Merged-chr3-31432031-3	chr3	31431535	31432535	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-121716.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.27894579367964	2.41919499709331	2.41752078406738	2.15069896957971	2.17474676852215	2.16369057334887	-1.50428397249334	0.0925187367718293	1
Merged-chr11-3676610-3	chr11	3676124	3677124	+	912.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 8 of 25)	intron (NM_198162, intron 8 of 25)	17924.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	3.71808927793053	3.67147370948428	4.01919124584159	3.31819111207998	3.54103476895835	3.86230221878477	-0.738756466683473	0.217768196856055	0.611750713166733
Merged-chr9-109074153-4	chr9	109073656	109074656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172774)	promoter-TSS (NM_172774)	-32.0	NM_172774	235610.0	Mm.100622	NM_172774	ENSMUSG00000025646	Atrip	6620401K05Rik	ATR interacting protein	protein-coding	7.54750889747392	7.6503362707537	7.58674873132749	7.74704175196071	7.72502723735097	7.57579212741304	0.134159109239206	0.542300486350184	0.857067349203709
Merged-chr16-21925500-4	chr16	21924992	21925992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 11 of 12)	intron (NM_172821, intron 11 of 12)	22060.0	NM_025693	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	3.8890136515655	3.72595669052409	3.61704134244289	3.93432497210805	3.55392692762022	3.68903299102915	-0.0652707179365141	0.90722020223284	0.978868492078838
Merged-chr15-59649965-4	chr15	59649498	59650498	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1344.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.96577928637348	8.3568831156463	7.96990281955909	8.00459216482037	8.11155287368023	7.90006437967874	-0.147320636923519	0.532785934411318	0.851971173271146
Merged-chr12-101976015-8	chr12	101975546	101976546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	72.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	8.57649059908341	8.95570326152784	8.61377380869266	8.59722959603967	8.6477211040454	8.45505783947073	-0.218941961194528	0.325535890268192	0.718159390122652
Merged-chr1-174038698-4	chr1	174038218	174039218	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3215.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	5.10496768844209	5.10087778668738	5.5115220753104	5.35463807261772	5.0819502097948	4.97762701135707	-0.184584985817605	0.630896183250816	0.894935857795011
Merged-chr10-119053300-2	chr10	119052800	119053800	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	4.1528383762493	4.33467821288202	4.06821241246389	3.93240922631757	4.06392191147126	3.88165591023152	-0.657301402158045	0.185587207337466	0.569807031037078
Merged-chr10-59235795-1	chr10	59235295	59236295	+	746.0	f0_c57.idr	Intergenic	Intergenic	13873.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.84023854760438	7.81666415573264	7.79703926698866	7.96652734429557	8.2437520215546	7.60453794704807	0.223686801584684	0.376250383566599	0.759106102843962
Merged-chr9-90244580-4	chr9	90244084	90245084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26185.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.42367848758289	6.19827436609619	6.29575704317307	6.50982322424454	6.44552560632552	6.29535692882413	0.188975213159305	0.493189980587093	0.831208279358962
Merged-chr5-3420627-4	chr5	3420129	3421129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76736.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.73565954611834	7.66269125347704	7.48578680359803	7.67485190496598	7.87459369920927	7.52169313259877	0.100562445105183	0.671386863680485	0.910501958294638
Merged-chr13-63007651-4	chr13	63007175	63008175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 1 of 15)	L1_Mus3|LINE|L1	42782.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.48140290580782	3.08808839962412	3.35076152154529	3.43407141884614	3.11737265980498	3.42222901970281	0.0448519310930943	0.944948141252779	0.987875414328125
Merged-chr2-32983492-2	chr2	32982992	32983992	+	855.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1409.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	4.65156663092966	4.72567460488791	4.66663901748442	4.8232654128594	4.84067405423713	4.56507284876876	0.176306466792949	0.663890340339954	0.907434579128176
Merged-chr7-83647784-4	chr7	83647279	83648279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 16 of 18)	intron (NM_001360088, intron 16 of 18)	7716.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.35066932128925	6.74629526620232	6.47791974749911	6.50929875027395	6.59738102600892	6.48280574511221	-0.0103645287801316	0.970235024556118	0.993405767524074
Merged-chr5-124019450-4	chr5	124018944	124019944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	12816.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.73790029829634	6.2200969425736	6.42433470364235	6.68213331865754	6.89202939601583	6.50294305149766	0.363958041708998	0.222532841664223	0.617484666328631
Merged-chr17-57339028-2	chr17	57338528	57339528	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19658.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.51677487773663	6.4404567671217	6.24770645367637	6.83832699266664	7.20789888557091	6.95848815635211	0.944177544317914	0.000541270858402655	0.011164617150711
Merged-chr9-87170649-2	chr9	87170149	87171149	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	21421.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	3.84865298239371	3.85735584862332	3.92295674981169	3.4092786026014	3.59955793975118	3.79878098359143	-0.899562106455665	0.105633921456527	0.433764288115161
Merged-chr8-70538180-4	chr8	70537679	70538679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	8.20790825653719	8.33251852513323	7.7498455177153	8.27189119589891	8.60714541546931	7.84236701210407	0.22424567785687	0.439664742009397	0.801272175253093
Merged-chr18-39519657-7	chr18	39518985	39519985	+	921.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32240.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.93155240414897	6.14303312011054	5.8992950940128	6.42996581270749	6.69954943360349	6.32238620310627	0.834067201406764	0.00476741408814881	0.0592689364181512
Merged-chr12-111449479-4	chr12	111448993	111449993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 7 of 11)	intron (NM_009396, intron 7 of 11)	6832.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	5.40674953545561	5.07730980448437	5.36213621625076	5.49125956655806	5.3376197512997	5.2350243163773	0.151017219902042	0.671639433808247	0.910573176861295
Merged-chr8-70543239-3	chr8	70542717	70543717	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	3542.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	6.63864615343766	6.61601250776194	6.97191697562004	6.30465620683005	6.14969501407303	6.48259213479515	-0.700711859521026	0.013788605129458	0.125458967262104
Merged-chr17-14943814-2	chr17	14943314	14944314	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175173)	promoter-TSS (NM_175173)	630.0	NM_026451	67912.0	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	6.23455121796303	6.32884370049044	6.18288828933266	6.12435442106132	6.21566071788411	6.36182885399313	-0.0367878587288345	0.895371380616817	0.975665889379756
Merged-chr2-60879534-2	chr2	60879034	60880034	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	1904.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.33048867474325	5.68859840958053	5.62171628479108	6.01872291203562	5.9123161961126	5.68451991661835	0.602274129342531	0.0683487721234194	0.34196167583702
Merged-chr2-143950280-2	chr2	143949780	143950780	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 20 of 23)	intron (NM_024281, intron 20 of 23)	34949.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.03310519772495	3.23484088469326	3.42812640904363	3.20535183281056	3.2605059093686	3.49779393793058	0.347842047763669	0.589669017128448	0.876939185846215
Merged-chr19-29484621-6	chr19	29484071	29485071	+	987.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	37416.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.9995491114407	5.9997326352134	6.09245558817486	5.85763028043276	6.21623474021749	6.06570950471982	0.0578108150012327	0.846739257856527	0.964111312125802
Merged-chr15-101984441-4	chr15	101983936	101984936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19906.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	6.34784936004527	6.39381035811592	6.25362656075856	6.50215713814671	6.65458520126679	6.55838249750092	0.387643339358261	0.14467817082867	0.507498892892878
Merged-chr15-50888612-4	chr15	50888104	50889104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035444)	TTS (NR_035444)	445.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.99498155470413	8.28797184449662	7.57812068143549	8.02808711909828	8.06048891408554	7.68435791324032	-0.0778815658348198	0.776262418839478	0.94480820353868
Merged-chr8-71569221-4	chr8	71568745	71569745	+	950.5499880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357181)	promoter-TSS (NM_001357181)	-352.0	NM_001357181	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	6.26946591296001	6.6460661580068	6.47078727214243	5.86473513548775	5.81928615276235	6.01189099811127	-0.97907238844932	0.000915147309753275	0.0168207592997461
Merged-chr2-131186862-4	chr2	131186379	131187379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023117)	promoter-TSS (NM_023117)	-69.0	NM_023117	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	5.31454149260371	5.24274443918395	5.41994738610589	5.3431038514355	5.25554887756857	5.33347084820062	-0.0269154932176908	0.93707147550204	0.986037792257163
Merged-chr3-89772791-4	chr3	89772302	89773302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	598.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	8.32244329668229	8.65386262056888	7.95258396008336	8.18672751678996	8.4742180995951	7.86613877882702	-0.197787493826841	0.485627121231413	0.827508375896939
Merged-chr4-32571208-4	chr4	32570701	32571701	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	461.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.59716109670238	8.89394032647144	8.53761861961834	8.48688898666366	8.68966397390771	8.09695757218566	-0.323014403261552	0.199620824818623	0.588216218978256
Merged-chr2-122572665-4	chr2	122572169	122573169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38608.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.83979209816164	6.25695191148919	6.56088581954347	6.42245828748471	6.52980452548742	6.26012679316545	-0.258611095319544	0.393015415520014	0.771429661681589
Merged-chr18-31634261-4	chr18	31633739	31634739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357554)	promoter-TSS (NM_001357554)	-129.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	7.55143597548807	8.15361593007036	8.11114698461596	6.94072964208933	7.20923564896956	7.10213311867067	-1.27765648863169	2.94024415572667e-06	0.000139561800176671
Merged-chr15-77800707-4	chr15	77800204	77801204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41471.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.53479087033383	6.83943745842839	6.56785405553118	6.86399220117737	6.78654756902917	6.90829477617156	0.296602612803192	0.257880421207794	0.655357464047955
Merged-chr1-61001892-4	chr1	61001402	61002402	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23988.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	3.89211535175245	4.19990350213136	3.50665745187474	3.53474364433327	3.24089886784227	3.6387102118148	-1.46746395759887	0.0202059973865179	0.162570163463293
Merged-chr4-26345913-6	chr4	26345409	26346409	+	792.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172865, intron 1 of 4)	intron (NM_172865, intron 1 of 4)	743.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	5.17266069069984	6.01790060920128	5.77887493875587	5.48733082524178	5.8987962990996	5.60305338724093	-0.048124431425711	0.90275965124153	0.977585531827525
Merged-chr15-6336272-2	chr15	6335772	6336772	+	866.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	36483.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.39858996678095	5.11726497472466	5.19107517329127	4.80917330047336	4.57677331623852	4.94969627452777	-1.0170995764971	0.00922372955054771	0.0951628131980129
Merged-chr9-48985158-4	chr9	48984652	48985652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-233.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	7.16778535094937	7.4314673380039	7.06998716110135	7.15473155729428	7.15530390770775	6.77347350967288	-0.284259690566991	0.285225896526314	0.682812656672892
Merged-chr17-87248115-2	chr17	87247620	87248620	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	17827.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	5.18152662134725	5.41024972312219	5.18206684736729	4.71599141112095	4.94098987454707	5.18137170987094	-0.660541638005259	0.0852682920852731	0.386467324208089
Merged-chr4-136310914-4	chr4	136310389	136311389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028871)	promoter-TSS (NM_028871)	-53.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	6.94362686029703	7.05602045295134	7.04412478487932	7.10796473063846	6.98488533796704	7.18847824572105	0.11588368016543	0.630387298961201	0.894709964383782
Merged-chr10-37203961-4	chr10	37203463	37204463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65037.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.94680630120638	6.83154640044914	6.1631543457144	6.25448724788207	6.5634510200859	6.24725028380896	-0.530344871667883	0.106199017007844	0.435086548852223
Merged-chr18-88892568-4	chr18	88892058	88893058	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018821, intron 1 of 2)	intron (NM_018821, intron 1 of 2)	1649.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.9853914122958	5.28694495798776	5.30753916655629	5.13378819145097	4.90621757630123	5.04782782846074	-0.354676090908291	0.344065332711163	0.732855195295801
Merged-chr9-122310895-4	chr9	122310405	122311405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-16482.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	6.450162852019	6.79645090790542	6.11661122633132	6.3891139505093	6.49367319308899	6.10733833990632	-0.23998344501616	0.454095098573081	0.810100289331925
Merged-chr16-94616687-2	chr16	94616187	94617187	+	843.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	5268.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.04018923304454	5.13774550897691	4.66660635278354	4.83895970262885	4.86087313995426	4.93151320644679	-0.224347392363124	0.574431220170229	0.870687718010865
Merged-chr2-21183019-4	chr2	21182515	21183515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	22350.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	5.96484792818218	6.07517104732641	6.01049871264392	5.61965310764912	5.69496630628171	6.07099436687091	-0.389647215222891	0.216098385694485	0.609549967011312
Merged-chr2-73460402-2	chr2	73459902	73460902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6513.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.77873081486891	4.20453101268144	4.67298891847385	4.55008235874217	4.75628394004919	4.62010742150377	0.1794420789061	0.694185516674129	0.919202859234248
Merged-chr5-62854741-4	chr5	62854253	62855253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	40930.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	6.60097786568257	6.67907497648231	6.58078495485156	6.73197666156357	6.55048460811214	6.51689284569855	-0.0295123921730007	0.909596319677253	0.979559833918396
Merged-chr6-51468746-5	chr6	51468253	51469253	+	977.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	1141.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	7.52392096821885	8.01353327760333	7.69959197638723	7.57738194326209	7.95109869019829	7.9666354460575	0.112717171457096	0.66454446270927	0.907652833270009
Merged-chr10-98775513-4	chr10	98775015	98776015	+	885.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139127.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.25839739567204	6.92916587817727	7.04733992359642	6.87573204971237	6.98359742533127	7.2840138615483	-0.0522643743239218	0.843538069168386	0.963519719942157
Merged-chr7-98719911-1	chr7	98719411	98720411	+	583.0	f1_balb.idr	Intergenic	B3A|SINE|B2	16664.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	5.76275971042648	5.58070210370691	5.46872151554524	5.491114803122	5.31096193200577	5.171462118843	-0.536218788405201	0.118928705252113	0.461021183629996
Merged-chr16-92823652-4	chr16	92823125	92824125	+	934.526794	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	2449.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.66127382507972	5.51936101852546	5.391835379867	5.51893346332017	5.0687079772371	5.08256044451309	-0.569983823222894	0.119690762705296	0.462425095964602
Merged-chr14-50929262-2	chr14	50928761	50929761	+	594.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310505, exon 4 of 7)	exon (NM_001310505, exon 4 of 7)	1588.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	5.00656376105947	5.07044540750165	5.49301119148165	4.99334535803508	5.32791967565998	5.03534458021823	-0.120657052812437	0.759047829928838	0.940311236380535
Merged-chr12-3891506-4	chr12	3891022	3892022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-222.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.83545497028956	8.16931616158351	7.88193449134915	7.94197542893275	7.98353384563396	7.68815935882099	-0.13088442843721	0.580021475273853	0.872727119904853
Merged-chr19-60817773-4	chr19	60817275	60818275	+	849.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	6220.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	5.82666330157397	6.11867721118422	6.2622737858687	6.21679676289939	6.40026400493944	6.60096154344512	0.562116060479361	0.0645684244003977	0.331149621143867
Merged-chr1-160195132-4	chr1	160194626	160195626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025474)	promoter-TSS (NM_025474)	-89.0	NM_025474	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	6.35459721184255	6.58779878965678	6.36386471263218	6.49155183144046	6.14008843559284	6.10900495634854	-0.300814161485612	0.304173416393378	0.700729014758405
Merged-chr1-36267862-2	chr1	36267362	36268362	+	748.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 3 of 3)	RLTR17B_Mm|LTR|ERVK	5563.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	2.74535278304724	2.52424313174614	2.87931329591899	2.83673422635851	2.70942855743297	3.12068779899641	0.882172255854769	0.25133421390424	0.648833216107931
Merged-chr16-33055846-1	chr16	33055346	33056346	+	818.0	f1_c57bl6.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	340.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	4.62865052128889	4.55303964833377	4.3820076887623	4.63667587278901	4.80427165820135	4.62488148394049	0.396934293815183	0.345377005797792	0.73374724517199
Merged-chr2-27515849-2	chr2	27515349	27516349	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080848, intron 1 of 13)	intron (NM_080848, intron 1 of 13)	702.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	5.19624334267259	5.11119950813327	4.95263766293793	4.83257101940963	4.8371280453443	5.05310841805556	-0.419021751129929	0.26745287134511	0.664707245929906
Merged-chr5-145167660-1	chr5	145167160	145168160	+	726.5	f0_balb.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	447.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	6.12288822994412	5.97659819194965	6.02308835298034	5.76380277081418	6.18240828207576	5.81690249553086	-0.162718518100003	0.604552410126083	0.88314896167691
Merged-chr9-41185545-4	chr9	41185056	41186056	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20599.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	3.84268595110667	4.10185205540255	4.39397961039013	5.07724461737694	5.24692361590009	5.20305673558624	2.63873381933923	1.12526881230511e-08	1.0078726300784e-06
Merged-chr4-133872669-4	chr4	133872176	133873176	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	2055.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.19147729083675	6.22758662796356	6.51892078284897	6.17612781521626	6.34170299927813	6.56137014890728	0.08493905706271	0.771736175688465	0.943614978016208
Merged-chr12-104124269-4	chr12	104123815	104124815	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3681.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	3.92397713800463	3.94855588932495	3.68035455369028	3.89922298571764	3.60938585922955	3.85774743382932	-0.236596979753782	0.661803676882803	0.906495637422278
Merged-chr6-143170248-2	chr6	143169748	143170748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	3018.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	3.29448091330719	3.23865811437833	3.29591082956301	3.57080154018123	3.19749541812861	3.31040941251901	0.364540666361191	0.558203674696485	0.864580830277077
Merged-chr8-68996467-3	chr8	68995965	68996965	+	723.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92271.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.16587392061086	3.99251909065493	4.28027957558157	4.51358422977622	4.41276413235553	4.51728270744471	0.8973578629047	0.0490246019489755	0.281283309913379
Merged-chr11-118228609-2	chr11	118228109	118229109	+	737.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	RSINE1|SINE|B4	-15867.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.49897102454182	6.56171651418372	6.51681224608773	6.08785680289132	6.36851071802252	5.95214983254331	-0.595956525772014	0.0400649100194364	0.24915702786975
Merged-chr13-96388252-4	chr13	96387780	96388780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026173)	promoter-TSS (NM_026173)	-14.0	NM_026173	67463.0	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	5.83349516182845	6.17874742559976	5.68960706936609	6.16658426220602	6.15754142713448	5.75294193214832	0.209053812923961	0.530200035558138	0.851070276054813
Merged-chr3-54807211-2	chr3	54806711	54807711	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133231, exon 1 of 3)	exon (NM_133231, exon 1 of 3)	580.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	6.80302277088656	6.96063422022278	6.85540949066807	6.57329865571486	6.59120724295631	6.58261893621342	-0.460730601808578	0.0666680814393237	0.337387040530547
Merged-chr10-117747746-4	chr10	117747239	117748239	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1381.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	5.77888015392745	5.76979854500058	5.98989249878973	6.3010138493098	6.27632597441476	6.22287442238355	0.73710901778355	0.0105418249051659	0.104238165978496
Merged-chr19-10604610-2	chr19	10604110	10605110	+	756.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145496)	promoter-TSS (NM_145496)	-352.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	4.16397754372079	4.14854150646334	4.35524891262309	4.10590274306458	4.19387919019589	4.4214191155167	0.0569831057657851	0.903433621492697	0.977827650905621
Merged-chr13-52633062-3	chr13	52632621	52633621	+	782.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	36239.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.16135633621965	3.01281162562054	3.57226389741052	3.2821872165684	3.07662531727611	3.49343778174852	0.103831432937565	0.879079080146247	0.972074795996392
Merged-chr4-6416176-4	chr4	6415685	6416685	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38086.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	6.94936955855902	7.13108306323934	6.76387309571145	6.95272260658673	7.14487745630515	6.77441879792831	0.0168589604062946	0.949654386529377	0.988243921877722
Merged-chr16-91354341-3	chr16	91353846	91354846	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18437.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.68466265838901	7.23273139490282	7.18619035647394	7.1011371284032	7.18516180931534	7.06335717070257	-0.409245564475128	0.12063777537018	0.464567086109036
Merged-chr15-25624484-4	chr15	25623990	25624990	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	1940.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.68305432375074	3.47378886782952	3.32312703626384	3.60616133335397	3.42088092093072	3.51260064075196	0.0181556432518938	0.975642905477238	0.994540154302743
Merged-chr11-100472404-2	chr11	100471904	100472904	+	554.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172565, exon 1 of 2)	exon (NM_172565, exon 1 of 2)	378.0	NR_155072	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	6.33551090094593	6.72976033189022	6.00343754488255	6.39753458872781	6.12333794236057	6.53555572231799	-0.0773587484865596	0.814624249735343	0.956369939298364
Merged-chr7-73617275-4	chr7	73616795	73617795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58900.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	7.98969612235482	8.49370044099686	7.83548911852591	7.96379091701696	8.26903682983493	7.75911858305831	-0.175206907342322	0.531989947715848	0.851867550687707
Merged-chr17-83213531-4	chr17	83212994	83213994	+	769.027771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.36651361723608	6.84235298454489	6.70025288069164	6.85146384603626	7.05970068554804	6.90892280071982	0.457753544365423	0.0974625024310479	0.416242873391297
Merged-chr2-173528748-4	chr2	173528246	173529246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028158)	TTS (NM_028158)	6154.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	5.19329523937471	5.1277989082478	5.12881820246055	5.11260397271764	5.45931180613959	5.44258187268903	0.398699527864926	0.265455414829454	0.663161206920213
Merged-chr2-3760434-4	chr2	3759915	3760915	+	977.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	46957.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.4022846035851	4.24258291528807	4.09320956574294	4.0266017339529	4.03316491290545	3.84986394287794	-0.798350666154079	0.106779441333287	0.436133111842732
Merged-chr17-28697534-4	chr17	28697026	28698026	+	973.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	4958.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.60053582899462	6.41806958329898	6.31567481200844	6.27228565622426	6.18700620806111	6.65377156654474	-0.131672057094936	0.656051527038492	0.904520810952906
Merged-chr10-44002742-4	chr10	44002259	44003259	+	870.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	2087.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.14737048535017	5.49089343002226	5.49885534131822	5.5904888467849	5.68493265819934	5.72214182716512	0.532967576827924	0.114959587698329	0.452636037155281
Merged-chr2-167842535-4	chr2	167842020	167843020	+	826.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89807.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.76715834929588	3.28228236058181	3.41734273678091	3.60730654173043	3.38004794764859	3.85255454246632	0.39237563968429	0.532524864838798	0.851971173271146
Merged-chr10-37231446-2	chr10	37230946	37231946	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92520.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.59424633138051	6.76102102954312	6.83602480446172	6.64598862504351	6.84273782017695	6.8216338384829	0.0692049142509175	0.78863160378428	0.94895503373255
Merged-chr10-80579169-2	chr10	80578669	80579669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1873.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	3.21191349795506	3.09945927835616	3.58332990301685	3.21458517278438	3.33439026760629	3.28694215523001	-0.101217146953563	0.875593121111163	0.971054644903929
Merged-chr11-108220687-2	chr11	108220187	108221187	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	123201.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.16571058117231	2.99851668313555	3.15674269053149	3.10527588923428	3.32518329462328	3.11074719632561	0.358450129518346	0.583286082206435	0.87400013033251
Merged-chr16-93818919-4	chr16	93818434	93819434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-13187.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	8.03310203681793	8.32285439860314	7.78173432143926	7.97423078103835	8.39329805441506	7.92275945472102	0.0705075373002467	0.790304661580301	0.949368241827272
Merged-chr2-166182058-2	chr2	166181558	166182558	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26375.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.05065186467322	4.98537368636022	5.03520206926444	4.80721190390119	4.68989126758643	4.8496768550852	-0.546767229655237	0.150420428285491	0.517247822505929
Merged-chr8-69974416-4	chr8	69973901	69974901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113346)	promoter-TSS (NM_001113346)	-18.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	5.73484123575537	5.61302533036755	5.71517336296623	5.5099353346296	5.54137998593686	5.37692905088749	-0.378557250569452	0.239480793322885	0.636359120505658
Merged-chr1-152787032-6	chr1	152786513	152787513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-13140.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.64183116541897	4.39121216980962	4.33700163521035	4.76717305065054	5.09624300906443	4.9432802778764	1.10916159562616	0.00919975934013959	0.0950233217469173
Merged-chr11-70431773-2	chr11	70431273	70432273	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-807.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	5.03653767865205	4.85641075002777	5.22240665719781	4.91495215824965	5.06146902068771	4.67289181567094	-0.287308176941292	0.474758752493329	0.821664499521211
Merged-chr9-95576368-2	chr9	95575868	95576868	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16551.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.32497700890347	5.2542151278842	5.17901803940736	5.63140043566601	5.37478510032507	5.63349711953676	0.556450715965372	0.104650504287517	0.431739757090374
Merged-chr18-6104679-4	chr18	6104174	6105174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	L1MDa|LINE|L1	31424.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.37254243699429	4.36306443044914	4.69256936942216	4.40074144488556	4.0634022470737	4.4912729336624	-0.402584402691174	0.393335597570392	0.771515439837752
Merged-chr8-95332076-7	chr8	95331554	95332554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024467)	promoter-TSS (NM_024467)	-104.0	NM_024467	79233.0	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	8.48902147911867	8.58538512562918	8.51633632849168	8.38639376664217	8.52629140086111	8.46384703432729	-0.0975704472312679	0.62564215726359	0.892533372691366
Merged-chr5-121249426-2	chr5	121248926	121249926	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29207.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	6.24519322643043	5.9072251603078	6.05486957653901	6.29504055731123	6.14231952675433	5.95064272454289	0.110930559838604	0.714854830708085	0.926101400534943
Merged-chr2-35346215-4	chr2	35345725	35346725	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.36351366483601	3.96515278930222	4.14619896573422	4.00416942040905	4.19905692659098	4.43027910965404	0.128528448710231	0.796934282013585	0.951572880317229
Merged-chr19-55232388-4	chr19	55231879	55232879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	8857.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	7.28948490034365	6.75404124925888	6.50045685925454	7.1155805668176	6.93711870580777	6.5605549941662	-0.00666127543716174	0.983733439304009	0.996435029808107
Merged-chr9-66358811-2	chr9	66358311	66359311	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	PB1D7|SINE|Alu	8361.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	6.30449285597782	6.69861426875352	6.20094233472038	6.19408034162374	6.48427882489947	6.40273892924579	-0.100474098112595	0.739583041020922	0.934245371298156
Merged-chr2-129408660-4	chr2	129408145	129409145	+	827.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37506.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.62554352028274	3.64792787903962	3.6413903296102	3.53541652827011	3.38789665089959	3.49653279651995	-0.606113747182522	0.282869745219421	0.68075273348424
Merged-chr4-34430779-3	chr4	34430249	34431249	+	940.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119866.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.00240743184605	3.15180147871287	3.1494361081543	2.57258199299501	2.61842323026735	3.05352072504547	-1.75129813882476	0.0304146729846339	0.210754839249285
Merged-chr2-172439497-2	chr2	172438997	172439997	+	965.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	4.83176917031145	5.11714789213143	5.07330860507178	4.8123370976496	4.70920291048514	4.93156269433703	-0.440513355882153	0.258981676690469	0.656571931204429
Merged-chr1-185331522-3	chr1	185331035	185332035	+	758.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-624.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	5.7693264209421	5.99925095716764	5.6057808744483	6.0127201692029	6.35622801035771	6.10255778514759	0.623083902647035	0.0501588653376871	0.285159854855906
Merged-chr5-114747668-4	chr5	114747184	114748184	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 13 of 18)	intron (NM_001077359, intron 13 of 18)	25807.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	2.63187803434785	2.65647565929188	2.9012272706318	2.91085768720316	2.55140459853653	2.54024914820109	-0.27769278733346	0.726581176344604	0.929898739079933
Merged-chr10-17575276-1	chr10	17574776	17575776	+	558.5	f1_c57bl6.idr	Intergenic	Intergenic	-147952.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.56716451442728	4.98603373921686	5.34382322665212	4.55210903108217	4.52150063361563	5.26981575471193	-0.38307417407835	0.436711459209003	0.799587236906924
Merged-chr6-121227006-4	chr6	121226503	121227503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017379)	TTS (NM_017379)	16269.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	5.74621597964502	5.88426016729598	5.79383540567313	6.36138596112224	6.27511411407653	6.342653207516	0.879851862199191	0.00213694911928249	0.0324710121105292
Merged-chr9-99109343-4	chr9	99108847	99109847	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30864.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.87920160505455	7.98637309610184	7.65799450667583	7.809923638411	8.03463631715765	7.59819318584501	-0.0268407756221532	0.912595017914259	0.9803740348902
Merged-chr7-130647487-2	chr7	130646987	130647987	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	7.43931991184154	7.4350818856321	6.56760577036112	7.053320618708	7.07776792689758	6.6086507201693	-0.423572380470118	0.203748579283061	0.593943097848407
Merged-chr6-35133829-4	chr6	35133333	35134333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-96.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	7.04860135710811	6.7845584669434	7.05046342058963	6.91701544874892	6.87586375442383	6.72051226342519	-0.181684390183114	0.477255917928773	0.823211450952012
Merged-chr19-41323530-2	chr19	41323030	41324030	+	769.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-59526.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	5.74881987411674	5.43363479192052	5.86257560212791	5.70647058604281	5.53254291206841	6.12976727577246	0.213819604422414	0.550573332211209	0.860709619458349
Merged-chr12-85108828-4	chr12	85108335	85109335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1998.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	6.16557913952316	6.37912348860703	6.43992556506518	6.25473332786772	6.31640460627755	6.05245961023907	-0.177878132292413	0.535595199667127	0.853620237777779
Merged-chr18-64962535-4	chr18	64961981	64962981	+	950.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-61046.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.60185204049168	4.74279915897383	4.02882828322256	4.61393062340292	5.11260889652162	4.85079574094779	0.8717035588576	0.0876125036522331	0.392571954975499
Merged-chr11-59506323-4	chr11	59505827	59506827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_135273, exon 1 of 4)	non-coding (NR_135273, exon 1 of 4)	313.0	NM_001291014	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	6.80964786895405	6.72573404511826	6.44770072507892	6.43628289502886	6.12374678614039	6.18161767213724	-0.688072550063805	0.0159636663285013	0.138723590896882
Merged-chr18-82826326-4	chr18	82825818	82826818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29579.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.84438590845345	5.96358813729673	5.47680277853389	5.38867966166216	5.29780295038	5.24651579883772	-0.898034620131313	0.00902097531603801	0.0937796626019023
Merged-chr17-23983592-4	chr17	23983081	23984081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8351.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	7.7341495110387	7.57651596409467	7.055478441651	7.58053731034345	7.86284438690346	7.18241993080568	0.124600965973529	0.681836213638159	0.914901722830768
Merged-chr11-88998127-2	chr11	88997627	88998627	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1276.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.57108858028293	5.77958347705048	5.60623562777312	5.57370395362923	5.71176218775738	5.82360194465962	0.0800403178548049	0.802318614809289	0.953197339007501
Merged-chr3-136425976-2	chr3	136425476	136426476	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23373.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	5.72882547282987	5.56324387336051	6.04230225149542	5.94845109875193	5.83908806672291	5.64131195606115	0.072740475226565	0.826004015754796	0.959051716454082
Merged-chr5-29950600-4	chr5	29950114	29951114	+	985.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-62500.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	3.87138626174599	3.75329564769201	3.78057946250857	3.9239801058154	3.73140941855843	3.79875244142295	0.0478763495992242	0.926984235389881	0.983578869536024
Merged-chr5-145230168-1	chr5	145229668	145230668	+	545.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1547.0	NM_001083958	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	3.54900777513407	3.82562475873708	3.80673268941401	3.50778893163435	3.07728758945223	3.34290826508854	-1.56114929003475	0.0143793664495209	0.129000358332263
Merged-chr18-55548005-2	chr18	55547505	55548505	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-555414.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.33606332673365	2.51809676744103	2.29390570462328	2.43041224703209	2.38568357810075	2.56220004992726	0.425241744354636	0.609412642068947	1
Merged-chr7-44985039-2	chr7	44984539	44985539	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	1381.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	3.63620230875194	3.73391313821205	4.3405037209011	4.07487803172303	4.10359562183116	4.5920355425698	0.955906924113593	0.0970548261808568	0.415426234820671
Merged-chr19-10284747-1	chr19	10284247	10285247	+	617.0	f0_balb.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	20130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.13893991673351	2.94468522818792	3.17343095459919	2.82103438584153	2.71478243400495	2.95871346606889	-1.27209844080755	0.0751956661528667	0.361120934662147
Merged-chr2-181282393-4	chr2	181281893	181282893	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	5573.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	3.81439194974212	3.69503830489317	3.97313409487739	3.79554991036736	3.86671812457525	4.08618337956651	0.283476242337395	0.588507878573818	0.876512265511242
Merged-chr10-13474437-4	chr10	13473945	13474945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195065)	promoter-TSS (NM_001195065)	-49.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.02066089351274	3.93890833884862	3.74360882761301	3.69158978619058	3.54284051537231	4.05805464782782	-0.441219227443323	0.431025285931846	0.796627952450168
Merged-chr2-3323342-4	chr2	3322846	3323846	+	952.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9282.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	5.18219134398678	5.17370703505682	5.28211645006347	5.24373510900085	5.56764002510096	5.249371853708	0.330318031799497	0.352579137230312	0.740194084833795
Merged-chr4-119127440-4	chr4	119126952	119127952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18707.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.02860641351321	5.18930152748496	5.08744240270143	5.31990565923596	5.33671077523508	5.43665556041878	0.518853961515894	0.137455407107654	0.495489733336814
Merged-chr17-42857706-4	chr17	42857244	42858244	+	838.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	18680.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.73712503001715	4.35326022038939	4.87425091704788	5.43356089388521	5.17580582315294	5.39353102163809	1.45545559965631	0.00035655453262538	0.00802276623869461
Merged-chr5-97001275-2	chr5	97000733	97001733	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	3544.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.79682330988585	4.73242144553954	4.80618866745512	4.73060537420377	4.94098943151199	4.87157349717995	0.17438371750066	0.654965160470714	0.904048560566546
Merged-chr15-74932684-3	chr15	74932144	74933144	+	748.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6-int|LTR|ERV1	-22407.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.15757763099593	5.23702463834459	5.76258535815439	7.26886620983646	7.56256764252369	7.1329672599398	3.27953877789325	9.51972715671453e-25	1.55317148481549e-21
Merged-chr5-67427693-7	chr5	67427181	67428181	+	972.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164806, exon 1 of 5)	5' UTR (NM_001164806, exon 1 of 5)	118.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	5.49742703494042	4.95337310961426	5.24591322722587	5.431038460346	4.64913254591458	5.18065536535947	-0.259757211643572	0.553397701175118	0.862251545920931
Merged-chr11-78467756-3	chr11	78467256	78468256	+	879.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026740, intron 2 of 4)	intron (NM_026740, intron 2 of 4)	2055.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	4.81478069893049	4.93271783039048	5.14702191902045	4.59446704858378	4.91820895300693	4.87467159727596	-0.349125556541211	0.386848328059508	0.767242114725069
Merged-chr1-136609032-4	chr1	136608533	136609533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15868.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.32819697067644	5.07007754603022	5.48336997269431	5.53247716133868	5.55730659446689	5.65340474129992	0.552443387617148	0.109330073159698	0.441790725633425
Merged-chr1-80453230-4	chr1	80452743	80453743	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	7311.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	5.13169371802416	5.17248792755826	5.35900044961172	5.35992176765644	5.08978868095073	5.7584167531646	0.395470873076045	0.303852272809168	0.700300249727315
Merged-chr17-43033263-2	chr17	43032763	43033763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16708.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.2122284464003	6.97380418458565	7.08134530080109	6.92350636575098	6.94841564764097	6.96690239560517	-0.22460089596723	0.355459705018269	0.742392248082664
Merged-chr9-62829331-2	chr9	62828831	62829831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-9456.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	5.81807869668463	5.73906504043538	6.13589934950197	5.88417152679825	6.09137948475149	6.04878550858953	0.203350904268735	0.512822369761299	0.842142798618015
Merged-chr1-155483822-4	chr1	155483336	155484336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	43275.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	5.71037882160588	5.44242657899408	5.39844184195628	5.72064803007172	5.5948701957392	5.86819833771763	0.357901067069573	0.282254458595971	0.680177416378801
Merged-chr8-39643713-3	chr8	39643217	39644217	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-1039.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.42798717678493	6.45174324118727	6.39053830306398	6.03525016175262	6.26548105152815	6.0796817646963	-0.475528909598017	0.0883906477951941	0.394655989576224
Merged-chr6-137412176-4	chr6	137411630	137412630	+	832.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	1409.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	6.04110874830975	5.80195349253778	6.09616796805901	5.7496416646068	5.69641928218026	6.07269530457259	-0.250844287592502	0.429751899478381	0.795863007201232
Merged-chr15-79658040-3	chr15	79657536	79658536	+	965.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029407, intron 1 of 17)	intron (NM_029407, intron 1 of 17)	920.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	4.32081654501822	4.21243963141818	4.23602968411846	3.71837451462828	3.82129970336088	4.02835881054746	-1.20072332898944	0.0165474945963628	0.142317048552476
Merged-chr4-129855873-1	chr4	129855373	129856373	+	740.0	f1_c57bl6.idr	Intergenic	Intergenic	35165.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.57116937149874	4.98564337145601	4.81453507657973	4.88937446398333	4.67984776053705	5.02130832505164	0.130355727711669	0.753707634273236	0.938570691167124
Merged-chr1-184615522-4	chr1	184615025	184616025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57834.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	8.21513570703211	8.19018877856586	7.83130229394711	7.75340213304539	8.17811756211433	7.7472169388686	-0.253168152821212	0.320125494615482	0.713975612629061
Merged-chr2-174439654-4	chr2	174439144	174440144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-605.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	8.29955404369397	8.30865278321632	7.92707553267701	8.18670114099586	8.37643529129967	7.86663463651804	-0.0394546423377526	0.87522366162061	0.970943409587731
Merged-chr10-128270409-4	chr10	128269888	128270888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-110.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	7.1927836409116	7.61330781606134	7.10657160260503	7.29458044030501	7.76496852276003	7.26563437554642	0.206673653878602	0.470665251110331	0.819601499277958
Merged-chr10-127650257-4	chr10	127649761	127650761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 4 of 21)	MERVL_2A-int|LTR|ERVL	7275.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	4.25164317411159	4.23270917066825	4.10159386442757	4.24120683681115	4.42846454248956	4.78627695718843	0.767822760127241	0.106510420216249	0.435740156613089
Merged-chr18-67776083-3	chr18	67775573	67776573	+	686.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045376)	TTS (NR_045376)	1197.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	5.0406237644348	5.27174722562051	5.18860119479166	5.01588458124047	4.89451195011997	4.94228668877354	-0.46866710292952	0.204009221530904	0.594262340917239
Merged-chr4-14827360-2	chr4	14826860	14827860	+	667.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-773.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	4.80506091431701	5.31890506551523	5.26754534541741	5.15783007121905	5.34945389074689	5.30003486070772	0.253392232865568	0.509192136914779	0.84026015734467
Merged-chr12-35418125-4	chr12	35417612	35418612	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116877.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	3.05686399541998	3.07765610285209	3.35974753839521	3.46148152298224	3.26924880251765	3.32057824971665	0.775683801360743	0.223295311840286	0.618087468987021
Merged-chr13-47277915-3	chr13	47277353	47278353	+	902.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83850.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	3.94570195479598	3.91720713863007	3.59760469789308	3.42923212476702	3.48781407154172	3.4375509424836	-1.34538266074639	0.0203512939082807	0.163317952275534
Merged-chr8-84656947-4	chr8	84656451	84657451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5901.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	4.98731029611317	4.59764091044122	4.67089824950778	4.61264890515354	4.45037028569641	4.61548147062872	-0.502599017425758	0.237826827710917	0.634375314429454
Merged-chr15-81481201-4	chr15	81480673	81481673	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14857.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	5.06735363672712	5.32028822380195	4.82543739831573	5.25758016841215	5.43782161302553	4.76427393641354	0.206049429142563	0.627032989607746	0.892988961867358
Merged-chr16-21474837-3	chr16	21474343	21475343	+	941.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 15 of 46)	intron (NM_001081366, intron 15 of 46)	51725.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.67751288616502	3.87613711859954	3.45833018249076	3.30452708435663	3.36694141497446	3.47350324202667	-1.13421779194584	0.0585610370162029	0.312958004902023
Merged-chr5-72818777-4	chr5	72818308	72819308	+	936.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	MIRb|SINE|MIR	49640.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	4.95644547359114	4.65874074405839	4.49761000741866	4.39468728008885	4.46093882585361	4.91257805950503	-0.297244357206035	0.514542825081085	0.843107848235413
Merged-chr17-26562026-2	chr17	26561526	26562526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	514.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.30311186407285	6.08579978093712	5.93924396329411	6.25097193554449	5.76096296006934	5.95211864119105	-0.21203844321445	0.509279727317941	0.84026772146894
Merged-chr8-69273276-1	chr8	69272776	69273776	+	603.0	f0_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	2196.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	4.42091011669851	4.58210829868932	4.25857298673882	4.20517855459535	4.13675460905403	4.08298756452278	-0.782582593109054	0.0922265127138891	0.404610670970173
Merged-chr11-101583883-2	chr11	101583383	101584383	+	604.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 2 of 7)	intron (NM_001359325, intron 2 of 7)	1584.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	4.60300935704317	4.67714201469941	4.29029413919296	4.28914003477851	4.68180542171762	4.26214913869452	-0.255235514062072	0.589840266951612	0.877024090368969
Merged-chr10-59335078-1	chr10	59334578	59335578	+	545.0	f0_balb.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	11782.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.95045588316291	5.23241177689692	5.30734374501381	5.27227856100439	5.32920715274905	5.21291130741081	0.224489997944078	0.533924492970765	0.852777001391163
Merged-chr15-25940555-4	chr15	25940048	25941048	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025459)	promoter-TSS (NM_025459)	-154.0	NM_001277315	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	2.68640874931399	2.64375797242835	2.5874931775664	2.7382641977595	2.53826085100484	2.90348353333991	0.478066282469741	0.533525014669242	1
Merged-chr14-63117207-4	chr14	63116714	63117714	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5248.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.77475667629178	6.58133978087472	6.62487002885221	6.65037484544922	6.66036333664355	6.28882029916288	-0.17263629370594	0.530779702979245	0.851363932161699
Merged-chr6-31219134-4	chr6	31218664	31219664	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-690.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	7.42919767932068	7.74546743419217	7.34495586454374	7.16784625229126	7.65415648490471	7.45627653853069	-0.113777552447185	0.668900444506611	0.909385924601941
Merged-chr3-123065666-3	chr3	123065174	123066174	+	917.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30687.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	2.4238467846398	2.35409932130369	2.68937424405284	2.76031196487887	2.55946031160836	3.10570146583039	1.86347517180564	0.0283075059207731	0.201437693718951
Merged-chr11-115476457-2	chr11	115475957	115476957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	790.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	6.76594486406422	6.88464743650703	6.81644843587273	6.89236529714121	7.20988410499864	7.00310079500857	0.34399616814508	0.173967285668707	0.553189356180945
Merged-chr11-49712059-4	chr11	49711587	49712587	+	909.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212484, intron 1 of 11)	CpG	635.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	6.40218871036909	6.25293143354022	6.1498525123219	6.62949207613057	5.81605745986011	6.33374136048349	0.0397345896984027	0.906796492355137	0.978838075044546
Merged-chr4-132768195-4	chr4	132767706	132768706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011284)	promoter-TSS (NM_011284)	-154.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	6.42630350253935	6.33378327705759	6.13244324762808	6.17818273216815	6.30626284571175	6.25675985008133	-0.102873390699873	0.714299939147633	0.925858234077362
Merged-chr6-136658734-5	chr6	136658196	136659196	+	909.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	RSINE1|SINE|B4	3197.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	7.25474755029595	7.35366580539228	6.78747523210175	7.76713752448186	8.00514110917058	7.31547985653849	0.835093946456708	0.00505232368274284	0.0616322751786639
Merged-chr1-174052354-4	chr1	174051839	174052839	+	929.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1964.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	5.33328501198213	4.91141150943847	5.01360545527651	5.30506651489722	5.43075324312202	5.00457714109152	0.339463576913115	0.382587161825803	0.764107846408276
Merged-chr2-157425911-3	chr2	157425409	157426409	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1616.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.46653973724193	5.4205648892613	5.36985423272536	5.13780922879497	4.64669714122391	4.6702604421947	-1.21500282183075	0.00204951978546055	0.0315304138347816
Merged-chr11-86757793-7	chr11	86757271	86758271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356393)	promoter-TSS (NM_001356393)	-204.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	8.78822747845575	8.8697759267148	8.54951937414624	8.46355859514569	8.80852506387485	8.38982674521957	-0.238533061587284	0.305660200924139	0.701784553364856
Merged-chr4-32343880-1	chr4	32343380	32344380	+	687.0	f0_balb.idr	Intergenic	Intergenic	-73555.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.71598182917396	5.48129170677996	5.3835379114235	4.14924206538682	4.06316163702431	4.45451570790678	-3.19099907633783	8.91566730855147e-13	1.70934296177408e-10
Merged-chr9-72274892-4	chr9	72274389	72275389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311105)	promoter-TSS (NM_001311105)	1.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	5.78192609340491	5.45598469571798	5.59470497824584	6.1768319948599	5.5496014557141	5.71309822952856	0.404013106937191	0.25809589745689	0.65554518843855
Merged-chr8-128687723-2	chr8	128687223	128688223	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	intron (NM_010578, intron 1 of 15)	2069.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.5482129474125	5.30391616336938	5.53784294680754	5.64333241326245	5.82265310995633	5.73505355212614	0.514582537440967	0.113574835502957	0.450187448195983
Merged-chr6-38338175-4	chr6	38337663	38338663	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 2 of 8)	intron (NM_028864, intron 2 of 8)	16440.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	5.39844837465128	5.38191054545342	5.53891071747096	5.76934807583601	6.17582655425342	5.68652109774194	0.871108780417624	0.00975611507759663	0.0988537291009085
Merged-chr14-21747432-2	chr14	21746932	21747932	+	602.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001007268, exon 2 of 8)	exon (NM_001007268, exon 2 of 8)	1190.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	2.76668816681965	2.47475275640499	2.43890710659033	2.6637393903888	2.43435881260626	2.77146257039971	0.312287237766563	0.704706234148731	1
Merged-chr2-91508610-4	chr2	91508108	91509108	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172668, exon 37 of 38)	exon (NM_172668, exon 37 of 38)	-18154.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	5.31546683158578	5.36410422193226	5.51994755117431	5.74778346969961	6.02562637561858	6.11036987741138	1.05309953083283	0.00117154301229774	0.0203638502125069
Merged-chr6-116460136-4	chr6	116459650	116460650	+	786.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1028.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	2.94745914965654	2.97322950502366	2.97997684999102	2.64093746070965	2.72864622112908	2.87459961056504	-1.12751187018134	0.120283490015678	0.463771641846234
Merged-chr2-90553852-1	chr2	90553352	90554352	+	753.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	26795.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.36017245464802	4.62248338615452	4.73749168304837	4.64150367514295	4.34507975389526	4.44343334870623	-0.238062040821873	0.591692222958928	0.877718735408096
Merged-chr5-96922845-4	chr5	96922293	96923293	+	804.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	1521.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.04911068888363	6.0090565189464	6.16553203953578	5.86564543036248	6.06531542237501	5.96338125699117	-0.171787114663062	0.557563407197742	0.864250916545731
Merged-chr17-35201207-4	chr17	35200724	35201724	+	975.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013693, intron 1 of 3)	intron (NM_013693, intron 1 of 3)	783.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	7.68217812501438	7.18462805303542	7.38790447483865	7.27290320382554	7.32095220774223	7.38071514970691	-0.166772752058287	0.511986355978671	0.84164135978571
Merged-chr3-37312071-2	chr3	37311571	37312571	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	375.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	5.18721253928531	5.1260574229496	4.89028097739758	5.04970607417737	4.66960715862175	4.79944333760918	-0.511971947737401	0.196507168253156	0.584338805518142
Merged-chr3-30977341-4	chr3	30976850	30977850	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7935.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	4.03605565573631	3.95717867812289	3.93710864834217	4.30629602846721	3.76103144102713	3.73818353495696	-0.0362571952413056	0.94714019815926	0.988008807662239
Merged-chr1-172578274-1	chr1	172577774	172578774	+	916.0	f0_c57.idr	Intergenic	Intergenic	12294.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	2.6119467797125	2.46431605808871	2.66057169682352	3.01755028731269	2.84213270101452	3.04117522609448	2.17388918356251	0.00591484295058753	0.0690754038221035
Merged-chr5-117159604-4	chr5	117159083	117160083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	ID_B1|SINE|B4	25995.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	7.93932092563285	8.08227317830298	7.84939635978186	7.9488078394256	8.12328613815257	7.69445393985373	-0.0306337191976319	0.896619089471988	0.975838835430135
Merged-chr7-110612282-2	chr7	110611782	110612782	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	B2_Mm2|SINE|B2	2638.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	3.90574749559226	4.09926401711887	4.14704736664584	3.95477390661821	3.99907848362227	4.21428193427572	0.00903348872984872	0.985416524169282	0.996904015210561
Merged-chr14-13960190-1	chr14	13959690	13960690	+	633.0	f0_balb.idr	intron (NM_001359900, intron 1 of 8)	RSINE1|SINE|B4	1123.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	4.01552423891172	4.06849164136807	4.24204495384155	4.16046950166932	4.21959418885206	3.69821513665956	-0.14557637866259	0.784097661260617	0.947434735607995
Merged-chr4-135182050-4	chr4	135181573	135182573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61428.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	4.12518010011413	3.87020174313101	3.7144175292099	3.62528030414725	3.79622656417508	3.61769893232381	-0.747580935796604	0.178196306741368	0.559276830911593
Merged-chr9-41059264-1	chr9	41058764	41059764	+	564.0	f0_balb.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20242.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.53670193544019	3.51081453616789	3.6086835824884	3.95751947270638	4.01400477285511	4.21079972336253	1.67966930150661	0.00184745194325263	0.0290536347182319
Merged-chr10-86731222-4	chr10	86730726	86731726	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153595, exon 5 of 5)	exon (NM_153595, exon 5 of 5)	18461.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	3.50508516176753	3.80905862678502	3.7342666295892	3.49867235431644	3.71395768562218	3.4213680003954	-0.447028657461502	0.445533695067107	0.805194667777499
Merged-chr5-121660123-1	chr5	121659623	121660623	+	734.5	f0_balb.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	387.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	6.51376363663441	6.43320288071436	6.01170972279364	6.26830395188298	6.36762337089299	5.65714094280387	-0.327840611153043	0.346489336330866	0.734677492075457
Merged-chr1-4785698-4	chr1	4785197	4786197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033530)	promoter-TSS (NR_033530)	29.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	5.92338681715903	6.03635510771284	6.01786245615176	5.97836841507347	5.42242529025317	5.59879636717651	-0.547721372630748	0.100455342679256	0.422702442887913
Merged-chr11-87423031-4	chr11	87422518	87423518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	U1|snRNA|snRNA	-4573.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.9132963129452	8.09285960734395	7.47170611184139	7.73266902676442	8.28524176326038	7.1699557624058	-0.0495235475938028	0.884154923146884	0.973466734537782
Merged-chr11-34072493-4	chr11	34071991	34072991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	25563.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.88302846933477	6.06296026276293	6.06029974113229	5.78645858847625	5.78651439539991	5.68251141345616	-0.434938614269941	0.149317022490124	0.515683842085178
Merged-chr6-87919972-2	chr6	87919472	87920472	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 3 of 6)	MTD|LTR|ERVL-MaLR	5996.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	5.30333366350558	5.4783252283709	5.43869433059556	5.19122287018015	5.32357161019305	5.38355393368799	-0.213537128006967	0.531593555174158	0.851732204413779
Merged-chr19-10022554-6	chr19	10022039	10023039	+	823.4055179999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	4345.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.77906644166189	5.84363208124748	6.00662089220651	5.92542905123825	5.63649355573924	5.64775123150581	-0.232327970692398	0.461864060305613	0.815107818354545
Merged-chr1-180766851-4	chr1	180766369	180767369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40826.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	5.16683341187076	5.22426793478456	5.87207877671743	5.83091336287486	5.68684324029695	6.15829858726942	0.829809037212357	0.0307632748791204	0.212145746406585
Merged-chr11-47398048-4	chr11	47397542	47398542	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18740.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	3.48871068703663	3.62044280113441	3.4148088731283	3.25430108308281	3.17807952692854	3.43068534454836	-0.903186605727802	0.13827334967379	0.496960021384664
Merged-chr15-97519392-3	chr15	97518908	97519908	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD|LINE|L1	186414.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.10403302023074	3.93888423078811	4.29357765891146	3.62253620176416	3.40457369370389	3.42019766617119	-2.13807684115315	0.000257541634420094	0.00616089754815224
Merged-chr10-4429468-2	chr10	4428940	4429940	+	762.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002891)	promoter-TSS (NR_002891)	-274.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	4.13606180178655	4.10043631910032	4.04899824875012	4.17588236596719	4.262094295905	4.38936332506527	0.489351157729384	0.294357429080017	0.691050220322492
Merged-chr1-13588112-2	chr1	13587612	13588612	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028173, intron 1 of 10)	intron (NM_028173, intron 1 of 10)	1798.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	3.90181362640817	3.69985419673824	4.01626449447001	3.79386951712089	3.7152442819832	4.45028789492526	0.434859718179511	0.450281262846707	0.808244958990181
Merged-chr2-91191807-2	chr2	91191307	91192307	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177730, exon 4 of 10)	exon (NM_001177730, exon 4 of 10)	3228.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	4.0646954580587	4.5080917004302	4.87950484614255	5.12153616721554	5.20911849144464	5.08170973764388	1.4141372138909	0.00223866949231712	0.0336388262188415
Merged-chr16-38221108-2	chr16	38220608	38221608	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 10 of 11)	ORR1C2|LTR|ERVL-MaLR	73716.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	2.04488250458991	2.08902729959646	2.09793439575917	2.17607925633114	2.02086226880583	2.30433814901266	0.668023577926741	0.459618211071021	1
Merged-chr17-65906614-3	chr17	65906120	65907120	+	655.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20865.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	3.74046763194705	4.1112727162045	4.0569268388404	3.8684398682859	3.74054240838618	4.03275776915099	-0.307543705074248	0.560944108453477	0.865345431520729
Merged-chr6-125120207-1	chr6	125119707	125120707	+	660.0	f0_balb.idr	exon (NM_145979, exon 26 of 39)	exon (NM_145979, exon 26 of 39)	-11676.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	3.17743813448025	3.1700181031467	3.04998644554479	3.05919204695813	2.928171768431	3.1225546394216	-0.464541200246753	0.481628823135222	0.825159653544888
Merged-chr13-94298629-4	chr13	94298104	94299104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-12773.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	6.38115433854351	6.6228077978501	6.18217864774298	6.34825360750027	6.31819877595901	5.87772672052878	-0.340224919072841	0.27674503802828	0.674062363556789
Merged-chr14-56668210-4	chr14	56667724	56668724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023773)	promoter-TSS (NM_023773)	-24.0	NR_153396	75339.0	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	5.73024805812618	5.79914387846078	5.86656515447903	5.77613008462579	5.56397423411311	5.72902121988937	-0.19898982462371	0.522395483821655	0.84761564078759
Merged-chr7-3645105-4	chr7	3644597	3645597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146176)	promoter-TSS (NM_146176)	-172.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	7.7065047201213	8.0961913215683	7.80020163312812	7.86260416170755	7.96264220921194	7.89728818164756	0.0379198968330354	0.870183934304586	0.970047222818467
Merged-chr15-63506091-1	chr15	63505591	63506591	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-26483.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.91523486556949	3.11782484118096	2.93316711654174	3.08781221304136	2.97850007393896	3.06660164596967	0.217136395145921	0.747639747200809	0.936653971666454
Merged-chr17-51099886-3	chr17	51099386	51100386	+	786.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	59492.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.7176219473549	3.94082542100013	3.96749602242799	3.97498343124003	4.2039721247786	3.77830268225475	0.396970285057535	0.454165008550057	0.810100393169515
Merged-chr13-60625967-1	chr13	60625467	60626467	+	598.0	f0_balb.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	23756.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.12028191078778	5.24944600239851	5.62335115571611	5.02659452390424	4.71767985138161	5.01827681946177	-0.873805471330094	0.0266941876295808	0.194383863963785
Merged-chr1-172337063-2	chr1	172336575	172337575	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4135.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	2.85950546144872	2.91842674385775	2.70765680374618	2.76301155912722	2.7822783806036	2.90521879040182	-0.106005828103417	0.883021550650048	0.973347392063704
Merged-chr11-69838984-2	chr11	69838484	69839484	+	988.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026982, intron 2 of 3)	intron (NM_026982, intron 2 of 3)	459.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	7.75198721649494	8.01996925188133	7.46871480386072	7.4743992068837	7.65013050064013	7.11423957937934	-0.481167038335072	0.0820655849708546	0.378961828861472
Merged-chr10-37343075-3	chr10	37342555	37343555	+	558.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-204129.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.88704193337526	3.7904116238565	3.92312136674311	3.93325216171132	3.6376823709731	4.03851955036334	0.0176564771995452	0.973486547970497	0.994039095662068
Merged-chr2-24975957-4	chr2	24975453	24976453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-80.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	8.54549977651007	8.71276522688445	8.24342742814185	8.50907020309953	8.81230083457427	7.99020794343339	-0.0404413329636161	0.886256822039985	0.973745715955602
Merged-chr4-132731732-2	chr4	132731233	132732233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201368, intron 1 of 2)	intron (NM_201368, intron 1 of 2)	813.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	4.31461488867354	4.26891947430275	4.31561377801854	4.2490884360257	4.40298788071538	4.24707763907713	0.0248858021743781	0.955892370719124	0.989787698735885
Merged-chr10-8535649-4	chr10	8535160	8536160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16835.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.58144289559099	3.68263340294777	3.67906830526242	3.64505535696548	3.28886941373101	3.74864565668977	-0.282972142017538	0.63061133512061	0.894783738152105
Merged-chr11-83942126-4	chr11	83941693	83942693	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030096, exon 1 of 15)	exon (NM_030096, exon 1 of 15)	103.0	NM_030096	78394.0	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	6.86559297995957	7.05446639594323	6.87481531387956	6.89191859312375	7.08051021813515	6.79709719942419	-0.00111341349013435	0.996507241501892	0.999103012741004
Merged-chr13-3637051-4	chr13	3636546	3637546	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267724, intron 1 of 3)	intron (NM_001267724, intron 1 of 3)	3014.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	6.5367414855909	6.46880192645205	6.4049621680962	6.64486013154613	6.81597135130285	6.30374997898141	0.232624986382325	0.412928803262857	0.784725209448945
Merged-chr2-160068972-4	chr2	160068474	160069474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52321.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.22977212050897	7.4275843619029	7.12243407660505	6.48164169027397	6.4038420222281	6.52258645101547	-1.24909963564203	8.86237083286292e-07	4.88357716729045e-05
Merged-chr8-13671834-4	chr8	13671324	13672324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	5763.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.50041153338994	6.25662579147054	6.41380585565386	6.1909753043057	6.38379062232565	6.49101708340581	-0.0578006030854824	0.836780107548681	0.962001762335242
Merged-chr12-69241995-4	chr12	69241516	69242516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178253, intron 1 of 12)	CpG	184.0	NM_178253	271005.0	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	5.69492220758171	6.04770466488182	6.16024875943657	6.1976183040205	6.14135416415268	6.33672670388006	0.422752933148368	0.168898230973976	0.545531802905646
Merged-chr5-76525305-4	chr5	76524806	76525806	+	916.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4001.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	5.68289301679011	5.86231895950027	5.93657413128571	5.95491531901857	6.09916281071844	6.10822929425375	0.403072893173014	0.178299095155587	0.559402033136986
Merged-chr5-34230893-3	chr5	34230393	34231393	+	589.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-43183.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	3.35797211900022	3.59434534495914	3.55905093038116	3.24584632329829	3.40334894063294	3.5243722266224	-0.427401155137116	0.475898753258794	0.82219557869602
Merged-chr10-71349445-4	chr10	71348905	71349905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	1642.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	6.2414498064044	6.40185420892861	6.31074928477366	5.85991586137354	5.8290178917963	5.64325896495054	-0.915054221823099	0.00190269879972091	0.0297369950652099
Merged-chr2-91196119-4	chr2	91195613	91196613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177730)	promoter-TSS (NM_001177730)	-997.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	8.10189077233037	8.04208411897972	8.05957302079568	8.08182975442769	8.34602198119434	8.01316539410013	0.132135965277243	0.549002985765108	0.860131595139289
Merged-chr15-76303167-2	chr15	76302667	76303667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153122, intron 12 of 26)	intron (NM_153122, intron 12 of 26)	4078.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	3.58125333725867	3.56959598445541	3.89802643523093	3.67353064614851	3.46788180034511	3.67518197965234	-0.273557423094185	0.629857464372688	0.894408596595842
Merged-chr2-165055190-4	chr2	165054691	165055691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-445.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	6.70897451219656	6.33037140256412	6.64347298204457	6.84678142137829	6.92783740521176	6.89923800394983	0.509125847018014	0.0562127913067235	0.305567371583211
Merged-chr4-126017865-4	chr4	126017364	126018364	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6795.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	5.69535955956404	5.7520009215293	5.68081697411455	5.7789179152492	5.44943669219205	5.32460807322308	-0.323229088803039	0.334981441263463	0.725339338581532
Merged-chr5-43846543-3	chr5	43846108	43847108	+	815.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-22201.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.06469299172934	3.86410566592114	4.44723212405477	4.20932086157534	4.15085577555732	4.39408140222174	0.314623091088942	0.534196436409511	0.85297101733083
Merged-chr13-108268020-4	chr13	108267515	108268515	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-48322.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.44119410829198	3.58099110721715	3.45581630007426	3.30265817709958	3.72091545314527	3.63443477142437	0.259319710985987	0.664377656581343	0.907585158243155
Merged-chr6-83914765-2	chr6	83914260	83915260	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_008717, intron 1 of 26)	CpG	407.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	8.07014740342334	8.54323835780849	8.20308839853384	8.11771479447888	8.06293673595527	7.6160563514629	-0.469290514238539	0.0726179250787321	0.354018766695052
Merged-chr6-34995485-4	chr6	34994979	34995979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-17480.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	3.17922173872807	3.06958249938986	2.73240289673973	3.12797154460928	2.93070610585487	3.06782493607156	0.14110665447049	0.84797873168236	0.964318271116593
Merged-chr11-94979128-4	chr11	94978638	94979638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2811.0	NM_009161	20391.0	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	3.54829144440036	3.16342106559683	3.50415122432816	3.36375367207934	3.26151632097309	3.41361600111565	-0.269891881008089	0.664427626466302	0.907585158243155
Merged-chr17-12769682-4	chr17	12769134	12770134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	72.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	5.63931694975387	5.5787119939799	5.52568633707014	6.29166228029546	5.94399497877542	5.5280465997023	0.688038821554186	0.0498186993099071	0.283983992065407
Merged-chr1-55051575-3	chr1	55051079	55052079	+	882.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1191.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	4.45737948815539	4.29290249203552	4.05061329180905	4.62645755544494	4.20651339168452	4.41063466599583	0.355437198994976	0.46147699912605	0.814992635038861
Merged-chr5-36518524-3	chr5	36518025	36519025	+	608.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	12098.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.76953583228293	3.67159453408122	3.96880699125077	3.49901145211987	3.20596188049501	3.6013239328148	-1.31781640494427	0.0283446879155623	0.201502136757209
Merged-chr10-121427278-2	chr10	121426778	121427778	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	B3A|SINE|B2	48972.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.53417565046606	3.15168802194937	3.7626097391262	3.50334641580967	3.26563671453465	3.53452174725252	-0.238501696855402	0.710530907352279	0.924358113435436
Merged-chr12-100087516-4	chr12	100087026	100088026	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24805.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	5.06233519462234	4.76082009994667	4.99920819329362	4.9050535077574	4.93917228437782	4.72406975101859	-0.170368705214273	0.665265749226294	0.907762144972922
Merged-chr11-121342907-3	chr11	121342409	121343409	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 2 of 9)	intron (NM_025793, intron 2 of 9)	11538.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	4.31005711698993	4.43298570492874	4.59984079764572	4.35028637875182	3.97902884702238	4.51074335614599	-0.419591693072215	0.383806303559616	0.765036051179388
Merged-chr11-102296213-6	chr11	102295698	102296698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 1 of 12)	CpG	431.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	7.26622053015205	7.02734251389514	7.33807051102676	7.41093811322254	7.03217620036226	7.28528352495953	0.0531315296164059	0.836079134866707	0.961926836287561
Merged-chr16-90285722-2	chr16	90285222	90286222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1219.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.4936278837455	4.60838461021063	4.54069682161014	4.57817125414265	4.80533386358054	4.84071117077195	0.466422203970562	0.258570550186864	0.656149385176841
Merged-chr9-44602917-2	chr9	44602417	44603417	+	959.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1975.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	5.08116787363446	4.64705225260234	4.87324147298368	5.15321560407137	5.06504167372253	5.11668887800587	0.494545326660545	0.204933766869647	0.595603523356255
Merged-chr10-80698481-2	chr10	80697981	80698981	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	RMER1B|Other|Other	3339.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	2.82128842174992	3.22942876640406	3.3994044082918	3.16906947951063	3.01818349414369	3.75649242430834	0.705520514183707	0.351196282428161	0.739086949987195
Merged-chr10-84440735-4	chr10	84440256	84441256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-285.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	7.39575527396053	7.68223035171353	7.62194076007238	7.55959319191914	7.48204379278991	7.39978777865506	-0.127838728461889	0.582955513159115	0.873850408743513
Merged-chr12-59135090-2	chr12	59134590	59135590	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	RMER6A|LTR|ERVK	3637.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	3.33984994231318	3.19552278039766	3.62916998278907	3.07129061440645	2.86690200728717	3.23500931719572	-1.44092667264572	0.0371003486766484	0.23769488516603
Merged-chr2-156190384-6	chr2	156189850	156190850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-6297.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	7.15898838130946	7.46921247140364	7.10097772456866	7.87694788723018	7.98015535093964	7.70496861009698	0.876505321699513	0.000365335920639525	0.00818053586775393
Merged-chr5-64932939-3	chr5	64932484	64933484	+	777.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030682)	promoter-TSS (NM_030682)	-285.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	6.38532116114205	6.14124490101067	6.04657840279691	6.59229775257177	6.43240426967794	6.44135927758184	0.465706018528047	0.100617009284599	0.423155931693347
Merged-chr5-150196013-1	chr5	150195513	150196513	+	679.0	f1_c57bl6.idr	Intergenic	Intergenic	-63917.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.67291463038064	2.5058677754646	2.47189436866965	2.6023218423921	2.76762147886001	2.73991478860557	0.836231465388477	0.284472384248764	1
Merged-chr17-24167114-4	chr17	24166618	24167618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	1691.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	7.31132971340184	7.31368392243211	7.21776783924953	7.15952865008758	7.34282601659956	7.440164327673	0.0480429062516486	0.838426805901646	0.962518552953479
Merged-chr12-84189267-4	chr12	84188773	84189773	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4742.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.88350654255278	4.69716732430571	4.82766682339917	5.28143877936291	5.17429490631932	5.00700537891583	0.779154177925672	0.0395107001219787	0.24694706946215
Merged-chr7-27592577-3	chr7	27592135	27593135	+	737.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1083.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.64312798904534	4.68291019868407	5.07911996846176	5.62487678406169	5.54620709878174	5.36989227856789	1.5022326091635	6.78283107110758e-05	0.00203528960607544
Merged-chr16-44050469-3	chr16	44050033	44051033	+	707.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8525.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.1734696924354	4.07313965286443	4.24182723293489	4.41314428866724	4.64867355012077	4.40028452828149	0.903034973752238	0.0464749243940652	0.272774459467123
Merged-chr11-121703369-4	chr11	121702884	121703884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	CpG	957.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	8.66382578425082	8.98014882053766	8.51389142769803	8.55620272180182	8.87185768674625	8.30739791124156	-0.182109065012331	0.475230835078899	0.821758256966855
Merged-chr1-135147843-1	chr1	135147343	135148343	+	1000.0	f0_c57.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1009.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	7.41079942060631	7.3930289281007	7.24239612611849	7.31936163630857	7.31532885139879	7.12575968686977	-0.138464293214214	0.554689357211533	0.86290101194412
Merged-chr12-85980182-4	chr12	85979676	85980676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	98865.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	5.68513792571871	6.14134195561913	5.94964486025699	6.26047393025244	6.22417400150408	6.16785735186456	0.475116326471321	0.12068689723347	0.464667646216844
Merged-chr1-88234623-2	chr1	88234123	88235123	+	780.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 8 of 41)	intron (NM_001281466, intron 8 of 41)	7603.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.49194197859986	3.45470872956342	3.30150913192162	3.5867313273339	3.42367245384162	3.59862209407078	0.407626794527631	0.48716684139893	0.828352892507347
Merged-chr17-34206080-4	chr17	34205573	34206573	+	855.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011530, intron 3 of 11)	B2_Mm2|SINE|B2	1594.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	3.84264599713805	3.74999271823878	4.07843680844581	4.29031614351293	4.46101563302305	4.09973743390225	1.19913367569945	0.0168930548237205	0.144256702152313
Merged-chr12-102452240-2	chr12	102451740	102452740	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12427.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.56757188091914	7.80507336588693	7.5920020036964	7.80763261911978	8.14749727837501	7.70523759613472	0.354663823827049	0.148371394047294	0.513915084072171
Merged-chr7-47050572-4	chr7	47050082	47051082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026436)	promoter-TSS (NM_026436)	-58.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	8.07311609255605	8.25167542758879	7.91602175682485	8.07617143547957	8.19353154105017	7.93208786386713	-0.0232524126103966	0.9183798688543	0.981763285723178
Merged-chr2-122610283-3	chr2	122609770	122610770	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025961, intron 1 of 8)	intron (NM_025961, intron 1 of 8)	1007.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	5.52610816482013	5.3857937321425	5.11747602859604	5.33467253333446	4.90453298758104	5.07506616906891	-0.504730007064677	0.18445635558882	0.568167187813126
Merged-chr6-127420072-3	chr6	127419578	127420578	+	763.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26762.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	2.85023030893553	2.76888887981398	3.02032358254137	2.80818077693772	2.35548325791209	2.79967138236825	-1.1011463327178	0.203002503913483	0.592889868221591
Merged-chr5-125329384-4	chr5	125328889	125329889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	11705.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.94816163387282	5.18413940121196	5.87507367697453	5.90615679641931	5.30513088213505	5.7686999844223	-0.0549847299474482	0.891491516244413	0.97481556123419
Merged-chr18-73542196-4	chr18	73541701	73542701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30504.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	7.84190484756299	7.94292758666004	7.76862269357427	7.55932742222259	7.76107683596693	7.39483532749066	-0.383597464267456	0.100864948903116	0.423513683621661
Merged-chr13-5714382-4	chr13	5713879	5714879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143713.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.49400223011647	7.76645614257763	7.19334763480453	7.33143052492284	7.39339628488043	7.22600338865376	-0.284495142081618	0.273515778739867	0.670813833153148
Merged-chr7-90070019-4	chr7	90069538	90070538	+	869.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40879.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.19313193104023	4.18862748634564	4.56731636971732	4.57008180308851	4.6107494486488	4.81699156837433	0.878822341357352	0.0496484033177687	0.283512306564816
Merged-chr3-61407079-4	chr3	61406617	61407617	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	42610.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.67592373164442	5.63617206059413	6.06959329329232	5.80478586944679	5.63657173599411	6.02536966534203	0.0448930244636358	0.893359510720737	0.975237866709772
Merged-chr6-72868957-3	chr6	72868468	72869468	+	809.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	30324.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	5.00101225736733	5.36259146047952	5.12545741849665	4.95465278217748	5.39226680227524	5.22310950350584	0.0675632190524782	0.860410294266389	0.967494646757537
Merged-chr5-72950436-3	chr5	72949918	72950918	+	563.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153567, intron 3 of 8)	Lx8|LINE|L1	36056.0	NM_153567	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	2.83432237624055	3.15455930553086	2.84666615032086	2.83462126401045	2.82514633286851	2.98123125952641	-0.385576338918615	0.590610534213421	0.877301111216348
Merged-chr10-19017337-2	chr10	19016837	19017837	+	965.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1927.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.37241043813687	3.09262901766543	3.317208043256	3.32622940778193	3.25885812509371	3.27527136339008	0.0896289642354122	0.885937174829131	0.973636976161493
Merged-chr4-40242137-4	chr4	40241683	40242683	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	3.47832066903913	3.5203047231133	3.62685560503106	3.59545170913796	3.3478628064548	3.64529794758311	-0.0406490338391518	0.943953234645678	0.987495247303971
Merged-chr5-138196303-2	chr5	138195803	138196803	+	664.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177878)	TTS (NM_177878)	1989.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	4.99248669155505	5.15310635773732	5.29289867686569	4.76958874194966	4.60924664206353	4.78665407239326	-0.9464329531483	0.0149525954959838	0.132415449769031
Merged-chr7-100854392-2	chr7	100853892	100854892	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9021.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	3.90166205626871	3.87092847306841	3.70655805960139	3.89035145031767	3.78023113290465	3.98113175874839	0.142784167056431	0.78372330515518	0.947280426244754
Merged-chr10-80165872-4	chr10	80165330	80166330	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2009.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	3.78006215375447	3.15286104377526	3.56288391487987	3.49742123580879	3.36084898447086	3.35528236293813	-0.440811902697457	0.49471598696467	0.832098209532918
Merged-chr4-134287793-3	chr4	134287312	134288312	+	838.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	34.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	6.1274544178075	6.67035178873537	6.91217917320639	6.6879877427844	6.91886627499667	6.87487947728624	0.357510280937029	0.25297796409736	0.650387469075023
Merged-chr9-32681358-2	chr9	32680858	32681858	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14684.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.09217834236867	3.14561563920998	3.10910798198304	3.05938170728641	2.97990168769725	3.12280091726075	-0.293165390603762	0.652123167412365	0.902896807825606
Merged-chr13-81658713-4	chr13	81658188	81659188	+	668.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030257, intron 1 of 2)	intron (NM_030257, intron 1 of 2)	882.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	5.16712697705167	5.13045085756858	5.30919918648237	5.45959696983653	5.2619307279575	4.99684199592377	0.127326463959333	0.728666455213346	0.930478966998914
Merged-chr17-32608275-4	chr17	32607759	32608759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13060.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	4.32348284670426	4.34077157301935	4.56361696625716	4.19071046856491	4.35439722105967	4.77387896719162	0.115276397418228	0.806837381322286	0.954385943720356
Merged-chr1-165587895-4	chr1	165587400	165588400	+	910.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46641.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.81348079713766	3.87176255026459	3.71693467701815	3.77921001777862	3.79816475687144	3.7873517414519	-0.0589965502824056	0.909961145311877	0.979711802949002
Merged-chr15-100681488-2	chr15	100680988	100681988	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	intron (NM_033612, intron 5 of 7)	6432.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	5.05673607905409	4.5324221959261	4.60040685381155	5.07698637303831	4.85881182840501	5.18338994569297	0.615345768997869	0.150647193955367	0.517564234271863
Merged-chr12-56336065-4	chr12	56335540	56336540	+	932.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9854.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	5.1189710580745	5.07424477843573	5.4645832391882	5.18290028227465	5.23349221313941	5.41605345189836	0.116545139446623	0.749774906208047	0.93745630986217
Merged-chr2-152788961-4	chr2	152788482	152789482	+	990.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	34809.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	5.84646834280746	6.02914247304945	6.05426595087535	6.00125365733561	6.18530397659507	6.17850713497581	0.25582818103957	0.382300595755574	0.763903231068644
Merged-chr19-47918183-3	chr19	47917692	47918692	+	802.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	1107.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	5.84927557889865	5.38291150857496	5.35791652256025	5.02133818657187	4.98402462959315	5.26372836784327	-0.939507449810004	0.0123260254060339	0.116363049918909
Merged-chr14-25400463-2	chr14	25399963	25400963	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58722.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.24050317688364	2.13367514122784	2.38318604680736	2.21130973840334	1.95802979650318	2.39514120169388	-0.382212038156636	0.685912427386322	1
Merged-chr3-37502751-4	chr3	37502258	37503258	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	82808.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	3.6305811961123	4.01025879645763	4.11413141548655	3.88041289844902	3.93016600954787	4.09235411329532	0.112965214356494	0.832279712738377	0.960616839788396
Merged-chr9-44182489-4	chr9	44181972	44182972	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	B3|SINE|B2	47814.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	4.03257025840354	3.91019475658798	4.38259955955238	4.11751558404359	4.02450828897939	4.10565056628643	-0.0897296955469024	0.857899332338626	0.966785186918462
Merged-chr11-54427928-5	chr11	54427546	54428546	+	767.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10133.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	5.66363754284011	5.66734890807021	5.83797670024934	5.45633808361928	5.47968812691438	5.44730551623238	-0.480590812136069	0.133484299050192	0.488692066303093
Merged-chr5-45520312-4	chr5	45519808	45520808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025895)	promoter-TSS (NM_025895)	79.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	6.8975510140319	7.37052176584218	7.09684657785691	7.1665078673953	7.04152673155573	6.99543371417144	-0.104444080655839	0.690758476473786	0.917977377427794
Merged-chr7-7130481-2	chr7	7129981	7130981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029584)	TTS (NM_029584)	6274.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	6.59484137954977	6.60901500645283	6.38492052241254	6.53778729094669	6.89064137498816	6.42540465542825	0.170345985880643	0.551453868146726	0.861230744829578
Merged-chr4-151045995-2	chr4	151045495	151046495	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	4.27409548529952	4.38694635158619	4.3220467753554	4.54943992909943	4.24497790930237	4.47577899045945	0.245284954653598	0.585303012277749	0.874951880612681
Merged-chr17-74529364-4	chr17	74528852	74529852	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 1 of 72)	intron (NM_007566, intron 1 of 72)	1057.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	7.52341839023247	8.23740233570945	7.9203088518848	7.78251371081558	8.16019477175064	8.0213611497781	0.097880667186671	0.722557844821052	0.928821151735982
Merged-chr3-115924545-3	chr3	115924046	115925046	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027193, intron 5 of 7)	intron (NM_027193, intron 5 of 7)	36363.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	4.30845570779193	4.23454380670675	4.43716123898354	3.66802248163093	3.62269925366142	4.07996815890613	-1.61322340541175	0.00238373785378906	0.035343203730948
Merged-chr4-102720192-4	chr4	102719706	102720706	+	949.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-39929.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	3.23825028566746	2.92715829329158	2.62900302853673	2.86886682058339	2.70316401019684	3.02929397609929	-0.397766016970844	0.620231277523975	0.890026802452616
Merged-chr13-37749263-4	chr13	37748774	37749774	+	825.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76764.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.16806579360646	3.02934765258486	2.97473285149406	3.26704445285547	3.04989193710133	3.38957931081608	0.754208357925077	0.258891157785896	0.656422447422032
Merged-chr7-45522017-4	chr7	45521533	45522533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008654)	TTS (NM_008654)	4235.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	7.21200798081493	7.22241713386631	7.05642247491102	7.14350938520228	7.28658735672899	7.03344299199051	-0.00667128199213398	0.977972962790602	0.994994154947079
Merged-chr11-106215659-1	chr11	106215159	106216159	+	598.0	f1_c57bl6.idr	intron (NM_026009, intron 1 of 12)	intron (NM_026009, intron 1 of 12)	708.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	5.74412791865563	5.78199891572469	5.95600227497087	5.91561896203916	6.1377337692099	5.77048352029281	0.245776782770509	0.430831172741225	0.796606987332891
Merged-chr10-29338858-4	chr10	29338359	29339359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110195, intron 5 of 5)	intron (NM_001110195, intron 5 of 5)	18854.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	2.65168847352722	2.70813634267262	2.8163026981179	2.68335554800685	2.50349090217248	3.00313047590059	0.082092925648614	0.91589181198553	0.981201223155309
Merged-chr5-143059007-4	chr5	143058473	143059473	+	714.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54047.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.04428740441694	5.75623609333971	6.35177694450372	6.12176915763436	6.19999437652898	6.13895239809061	0.161736004289013	0.607479340254118	0.884581207370863
Merged-chr7-44824478-3	chr7	44823891	44824891	+	787.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	RLTR20B3|LTR|ERVK	-7733.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	3.97526381586435	4.50725953987484	4.73240412583723	4.43470174402809	4.32697862519442	4.45385399532771	-0.0827045692068432	0.868286645933453	0.969642939011354
Merged-chr4-120882330-4	chr4	120881829	120882829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	27530.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	6.02244019589585	5.57106580017065	5.90801434491861	5.93557478845255	5.73930808122933	6.40441543025701	0.349263403838789	0.32367508745647	0.716910464718615
Merged-chr15-84192192-4	chr15	84191695	84192695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-38.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	7.19413260479167	7.34268109610334	7.24902637401347	7.29334666532264	7.21042711091534	7.04223586944007	-0.109461216678957	0.645371290872667	0.900539222399975
Merged-chr2-166700565-2	chr2	166700065	166701065	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	13267.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.6867350978772	5.17978497416428	5.22170193470805	6.06632225765863	5.94170246169955	5.61053807258012	0.920712723725671	0.0116852673482764	0.11217209569859
Merged-chr8-71309445-3	chr8	71308877	71309877	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	36663.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.65226767304155	6.50732235101808	6.88481837108004	6.40445898488344	6.06169229663368	6.44982303922651	-0.609341816938933	0.0369161675919356	0.236777959838879
Merged-chr7-139224235-2	chr7	139223705	139224705	+	803.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-10898.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	4.31613594748306	4.25253707233426	4.12484653623348	4.91938782632727	4.43304950014035	4.19697470309041	0.814253569032663	0.0988339197813491	0.419333642002316
Merged-chr3-51340521-8	chr3	51340042	51341042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291059, exon 1 of 10)	5' UTR (NM_001291059, exon 1 of 10)	102.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	8.76005609604365	8.45508310481144	8.46202421290645	8.5671567798728	8.23440918297596	8.45660165177137	-0.20108504649341	0.375862603662204	0.758951282467405
Merged-chr7-126424445-3	chr7	126423927	126424927	+	634.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4340.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	4.13472980171367	4.16623607523563	4.56793656419256	4.15885813716778	4.22818475135774	4.31365160280145	-0.16219615669229	0.734173716425812	0.932325051544019
Merged-chr10-84337903-4	chr10	84337389	84338389	+	746.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	102582.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.08115734649314	6.05730806609374	6.18175845536507	6.00769377889438	5.96896549177635	6.30023019931677	-0.0241283490251202	0.934709018518663	0.985727536128156
Merged-chr12-32123720-4	chr12	32123227	32124227	+	863.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62448.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	3.40046047550435	3.47133822507407	3.41134871437998	3.43025133987251	3.4373955556543	3.64135149905974	0.265786134820796	0.647194351709764	0.901269394940103
Merged-chr16-56036102-4	chr16	56035611	56036611	+	741.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029092, intron 1 of 1)	intron (NM_029092, intron 1 of 1)	1663.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	4.02941819901975	4.11261687988567	4.07487059446814	4.03237768706155	4.0623320320423	3.78407266855566	-0.289975289791571	0.562781320482691	0.865755360453189
Merged-chr18-60745602-4	chr18	60745111	60746111	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1135.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.87027265615598	6.6428416526924	6.90695343415422	6.79118923684739	6.79412789886719	6.31849983061603	-0.22321355672656	0.432402007324713	0.797340659568202
Merged-chr19-38837332-4	chr19	38836806	38837806	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362424, exon 1 of 11)	exon (NM_001362424, exon 1 of 11)	727.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	5.79114403793786	5.76584475092243	5.794252593068	5.52698038216235	5.09656498586371	5.02832903728542	-1.03450981000397	0.00359862895709651	0.048134675891238
Merged-chr16-31070941-4	chr16	31070361	31071361	+	882.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	10571.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.76173110833301	3.88013266884068	3.77194850319594	3.96495051079067	4.04783928729402	3.78929688769526	0.430361885080856	0.406346301206802	0.780646569949505
Merged-chr4-132198636-2	chr4	132198136	132199136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 4 of 4)	RSINE1|SINE|B4	13620.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	4.02301907461686	4.20290146812169	4.3522036421951	4.20934557614437	4.36934581494506	4.57780299563393	0.523861933172142	0.266361155669173	0.664166899200562
Merged-chr4-128691254-2	chr4	128690754	128691754	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	2516.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.88687583510955	4.09937795774331	4.16950947396664	4.00418257509287	3.92472554630292	4.05451459627351	-0.182067450232549	0.713307562846726	0.925479342928394
Merged-chr14-46917270-1	chr14	46916770	46917770	+	657.0	f1_balb.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	34305.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.00458713031222	3.03778389496361	2.92604308809758	2.91050640903615	2.94784668801657	3.22924942889419	0.173018507607881	0.800276741892608	0.952434057632842
Merged-chr17-29433500-2	chr17	29433000	29434000	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-57545.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	4.14949522921662	4.43351306684005	4.57612244236082	5.53899235334765	5.51212134567326	5.42398497195999	2.48235431876809	1.18898093332515e-09	1.29662811926762e-07
Merged-chr19-15815388-3	chr19	15814889	15815889	+	929.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109233.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	2.94892497956349	2.59938354136544	2.70947132617353	2.74864467638496	2.58740040617873	2.90556861265689	-0.0719238763891935	0.925438870169099	0.983183533267328
Merged-chr2-59163005-1	chr2	59162505	59163505	+	659.0	f0_balb.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	2155.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.28429034972417	5.27939036002111	5.14824839980101	5.61959940839866	5.70148702749776	5.02577466078777	0.496512843584863	0.19259266220441	0.579601410786647
Merged-chr19-24966425-4	chr19	24965954	24966954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4838.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	7.53416075077596	7.9417397193799	7.27767093294659	7.87241080862935	8.19829739700164	7.46418082324974	0.381580130357067	0.207393498929682	0.598176652880203
Merged-chr15-63555112-3	chr15	63554613	63555613	+	691.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-75505.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.39562550813704	3.33744697730011	3.89002589337275	3.37347318118872	3.26854999667848	3.77801189880837	-0.257220926830045	0.691067656423451	0.91812801462051
Merged-chr15-39173049-4	chr15	39172550	39173550	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-25236.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	4.60140496028823	4.63602511025529	4.77330840163004	3.91534808518787	3.76336943472379	4.14795071192571	-2.05466070369757	2.63213773768844e-05	0.000922556515912297
Merged-chr8-108596183-3	chr8	108595677	108596677	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.52310869864243	4.0927896303669	3.33328833898226	3.34300399693666	3.36068323546193	3.4684078325873	-1.10299166951769	0.0896596250119336	0.397845460643823
Merged-chr6-57766251-2	chr6	57765751	57766751	+	954.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	Lx5c|LINE|L1	58874.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.8404111628465	6.3405778234212	6.39687102708756	6.67253974009948	6.58918013297313	6.7792581764627	0.198547123461162	0.494050713719586	0.831815174927983
Merged-chr5-123671196-4	chr5	123670701	123671701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13160.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	7.48465642415253	7.75859929825584	7.10270751432759	7.903827714136	8.14752474955291	7.16074852357445	0.473193566016979	0.152505219164105	0.520622559949406
Merged-chr1-125461622-2	chr1	125461122	125462122	+	989.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-25895.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.89112464866855	3.81841712651939	4.31978638246773	3.98489192549176	3.60803000988586	4.34632275813039	-0.0409017849020038	0.943755704531327	0.987495247303971
Merged-chr11-58323368-4	chr11	58322925	58323925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	-60.0	NR_028331	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	7.25435924797288	7.59707220183101	7.49231532446275	7.52781298162234	7.51169272889427	7.26531853897681	-0.0142493282331246	0.953601431319296	0.989446911725587
Merged-chr7-55935309-4	chr7	55934791	55935791	+	893.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256131, intron 5 of 5)	intron (NM_001256131, intron 5 of 5)	27202.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	4.3875236322446	4.52516773781329	4.44502526127419	4.7667762739728	4.29411147889887	4.55485970732497	0.232225494439525	0.604824391398312	0.883226183914895
Merged-chr17-69157548-4	chr17	69157021	69158021	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013813, intron 1 of 21)	CpG	777.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	7.04648676316308	7.19264374960984	7.20496760139146	7.29617943464827	7.13148434334402	6.90506309955428	-0.031493497670056	0.899963388395056	0.976728292075907
Merged-chr1-152870967-3	chr1	152870462	152871462	+	974.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005507, intron 1 of 21)	intron (NM_001005507, intron 1 of 21)	31683.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.84873025658701	5.71501771206676	5.43983244723756	5.81924089756956	5.82287731131024	5.56587944957602	0.107591704844768	0.744811446923599	0.936032341688524
Merged-chr2-153348593-4	chr2	153348095	153349095	+	769.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	2456.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	5.67524634922443	5.79883365993488	5.68280801171106	5.82833846524051	5.71439715151809	5.63512492557753	0.0152643590253519	0.960833399468614	0.990386809359123
Merged-chr1-143903474-2	chr1	143902974	143903974	+	659.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100675.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	2.92090585284709	2.92786302737465	2.70463113219063	2.95593333880247	2.86659393860003	3.02895635269936	0.426650203417822	0.549979374775792	0.860509903840749
Merged-chr1-171330288-2	chr1	171329750	171330750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357553, intron 1 of 4)	intron (NM_001357553, intron 1 of 4)	681.0	NM_001357553	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	6.11493396120341	5.98690138727204	6.57620808177384	6.34021705301246	6.1650084165064	6.07379938077522	-0.0643856574689976	0.839246819053086	0.962725890398731
Merged-chr2-75638341-4	chr2	75637842	75638842	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-20917.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	3.65826424076635	3.51682574317219	3.72861505467952	4.97281228559067	5.01106604011734	5.42874560388258	4.70102520089439	3.29424696513767e-13	6.83560352805924e-11
Merged-chr12-54984547-2	chr12	54984047	54985047	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	1789.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.46922881617335	5.21387742706034	5.36012271173028	5.60182597890424	5.01305006502639	5.56614972418732	0.117339720543461	0.758572846229587	0.940237180588619
Merged-chr11-101544104-2	chr11	101543604	101544604	+	963.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	7851.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	6.79601217445881	6.84805090868729	6.5213160511489	6.47690158318002	6.6147215875549	6.28600690039574	-0.41461186637279	0.135289769155613	0.491473089364779
Merged-chr9-123928246-4	chr9	123927771	123928771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40421.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	8.39632876083231	8.49368543046	8.23236258956558	8.38335389692206	8.78416438796502	8.17284937262362	0.13821510031725	0.580188618254153	0.87276422265422
Merged-chr19-5072076-4	chr19	5071551	5072551	+	939.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3973.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	3.40346984115137	3.11680220822546	3.13884949539086	3.65949554865693	3.39986594933379	3.39498252111879	1.01378175341283	0.111708209620333	0.446386243579641
Merged-chr1-36987321-4	chr1	36986810	36987810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M7|LINE|L1	-47783.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.48583691311922	4.1218270133446	4.24428790024433	4.44193405957098	4.36169525090536	4.31298404118958	0.206697970831074	0.654036771887347	0.90364131093357
Merged-chr13-9151311-2	chr13	9150811	9151811	+	698.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	57430.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.70311767661372	3.58420933042926	3.69560788983373	3.53747708545706	3.17074372503284	3.66405688223315	-0.703959050509465	0.248738872672675	0.645819769301048
Merged-chr7-139388439-2	chr7	139387969	139388969	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-640.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	8.00063813038119	7.9873621992849	7.66639831981368	8.15423152826912	8.20661192880831	7.79627929595346	0.243398382946396	0.317600697028984	0.711433769406873
Merged-chr10-127636823-4	chr10	127636307	127637307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6179.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	6.20581395791574	5.54418314918996	5.55397445851477	5.4799281976734	5.25441144730222	5.0799024479418	-0.994316665597634	0.0106586417109264	0.105132910191157
Merged-chr11-29147657-4	chr11	29147151	29148151	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 17 of 27)	intron (NM_027869, intron 17 of 27)	16900.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	5.75982866423971	5.59970194704939	5.64961782305296	6.96778508814052	6.92286215221117	6.81584921021641	2.04618506865326	2.487426974187e-13	5.3070211196962e-11
Merged-chr12-102704803-2	chr12	102704303	102705303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	66.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	6.48784326586894	6.59074395716538	6.48947026508305	6.78442185842345	6.39762503022652	6.58390412415742	0.110413507439674	0.687164541138628	0.916983035113856
Merged-chr6-83017301-4	chr6	83016794	83017794	+	980.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	L3|LINE|CR1	16177.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.47516231855722	6.61473788448059	6.7098114267018	6.78971954669919	6.93896903149525	6.62137040732995	0.315992657360075	0.232921088627175	0.629270364053701
Merged-chr11-61728244-4	chr11	61727725	61728725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7426.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	6.05487953318346	6.10437734274448	5.87242734440309	5.94773159211142	6.56551020893581	6.52861466859299	0.601074267188726	0.0631930002041516	0.327325893985747
Merged-chr17-22166073-3	chr17	22165522	22166522	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177596)	promoter-TSS (NM_177596)	-45.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	4.46753047603677	4.63634291273882	4.06760359184139	3.67136752891209	3.40435744812252	3.76417149285328	-2.60503066505733	6.42145561564063e-06	0.000274430651703249
Merged-chr5-64233874-2	chr5	64233374	64234374	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	PB1D9|SINE|Alu	3517.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.97965240462196	5.70620704262677	6.02775904163494	6.52273682011554	6.14512877479934	6.15486442747053	0.651602425866677	0.0358514453884889	0.232638779371862
Merged-chr3-107994367-2	chr3	107993858	107994858	+	697.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7938.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	3.85185127120264	3.95184226373808	3.95914856667472	3.81838392214128	3.50285664451765	4.02735072582889	-0.414961194570625	0.451444629972341	0.80905909605502
Merged-chr2-75639768-3	chr2	75639266	75640266	+	902.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-19493.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	3.32167761920275	3.32453163172226	3.60662736440674	4.97623296291818	5.18883851739912	4.88100105700716	7.37216462719732	1.37273638891181e-09	1.47765393853265e-07
Merged-chr5-100633950-2	chr5	100633450	100634450	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	40306.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.7108970481681	3.46543830396723	3.45974654827957	3.78349150893541	3.3683085848812	3.84637906756599	0.423829370717244	0.481141107244596	0.824953741430059
Merged-chr3-127788486-2	chr3	127787984	127788984	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	6.26950717080976	6.25391714426542	6.42242892691621	5.93546171979205	6.15323221693064	6.56521629899187	-0.13073738009539	0.674148475664616	0.911841916826811
Merged-chr8-14669607-4	chr8	14669142	14670142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-218894.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.43780500615711	5.29887037227012	4.89474269255824	5.31857010279847	5.21464154113424	5.2203933899249	0.0145177289343691	0.969174813169227	0.992995172144871
Merged-chr19-45059829-2	chr19	45059329	45060329	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	12253.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	5.16815399761576	4.79900310070581	4.86300301255022	5.08014928361588	4.87745821030254	5.0376236314603	0.0818444606436657	0.834517231186476	0.961319929864283
Merged-chr4-133154226-1	chr4	133153726	133154726	+	594.5	f0_balb.idr	intron (NM_153423, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	23593.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.34484826210585	5.21971439059877	5.32215281477814	6.02508053033187	5.82069360297484	5.90776969403672	1.16354363567263	0.000296132163612569	0.0068936159249239
Merged-chr13-93301156-4	chr13	93300664	93301664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2593.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	6.70534209586013	7.02636203864679	6.71458818350871	6.63920631686503	7.21973032648865	7.14825885366619	0.308011111291853	0.291080550500868	0.688857889616589
Merged-chr19-53315159-2	chr19	53314659	53315659	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	3714.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	4.51092409580499	4.23969819121754	4.34739270462292	4.2383342984015	4.22468552964318	4.13662872999002	-0.45139904231391	0.326944225014924	0.719267796022909
Merged-chr12-112593390-4	chr12	112592858	112593858	+	890.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	4574.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	5.00486199463165	4.90150725355246	5.31278985119349	5.04101391633907	4.90106264339468	4.95745002531133	-0.228613009911642	0.5522117053101	0.861546661145201
Merged-chr10-80693772-7	chr10	80693216	80694216	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8104.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	6.92961235812741	7.07769071465411	6.5536203661437	6.94130284989022	7.31345416575872	6.85047222516378	0.271760588389449	0.349854138354226	0.737894176172428
Merged-chr4-156197558-4	chr4	156197035	156198035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-47.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	8.02282726869428	7.88296268707985	7.70455841143474	7.84217181201413	7.71113235979873	7.65962262527865	-0.201838520617019	0.373864958804112	0.757604135369744
Merged-chr5-142475952-3	chr5	142475449	142476449	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172725, intron 14 of 16)	CT-rich|Low_complexity|Low_complexity	12018.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	2.70140438714427	2.58962591475993	2.79610215549931	2.7099183766913	2.37402383195391	3.04009735658949	0.203314328656124	0.807870795898085	0.954583809755663
Merged-chr1-36596256-4	chr1	36595742	36596742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-2910.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	5.37398397297888	5.46604523465809	5.37047921025223	5.62933570695355	5.85163160246413	5.71998519212491	0.627809437666272	0.0521235479261549	0.291746009406666
Merged-chr4-57953979-3	chr4	57953468	57954468	+	798.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	2443.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	6.13280095315926	6.34680453893341	6.43127461676493	7.10087108783183	7.23282014001985	6.90072251406537	1.24203682707956	3.59460134528838e-06	0.000166074174757776
Merged-chr9-40784194-4	chr9	40783717	40784717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133733)	TTS (NM_133733)	-17056.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.75939541096074	6.50886362571526	6.52095848086907	6.84355580775444	7.16052664366231	7.10219490554114	0.680182658363624	0.0103508773262885	0.102912630011448
Merged-chr18-14813192-3	chr18	14812717	14813717	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100449, exon 7 of 15)	exon (NM_001100449, exon 7 of 15)	29972.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	3.24638553777201	3.18904018433727	3.2692756742979	3.24102437521166	2.99096004154162	3.34038211675177	-0.178661766162339	0.781660488796905	0.946262489478465
Merged-chr4-132573006-2	chr4	132572506	132573506	+	616.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	8939.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.3960269782602	7.12286018861365	6.78271158432347	7.16480058138477	7.07643056439849	6.47765104266129	-0.274860803173378	0.383621181784041	0.76494131641868
Merged-chr12-69228136-4	chr12	69227614	69228614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011133)	promoter-TSS (NM_011133)	76.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	5.73707115005982	6.08011827842871	6.25736094237531	6.18889903672662	6.15053572409482	6.40878028247245	0.363202982530823	0.244163091316577	0.641419539757206
Merged-chr12-85391277-4	chr12	85390779	85391779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-16562.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.18380796639572	5.72926109763654	5.96710473954935	6.08161864310123	6.02619394839839	6.05103459410117	0.134884280211566	0.662759091805492	0.906804932599005
Merged-chr13-51136604-4	chr13	51136103	51137103	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	2285.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	4.0142990709461	4.18633677163797	3.96341166895489	3.8790228521623	3.97944723191028	3.93214693529443	-0.390176397675139	0.433560210414459	0.797815674529737
Merged-chr8-41240096-3	chr8	41239599	41240599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	CpG	340.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	7.98395288790778	8.13058414618098	7.74415944193686	8.37140776572135	8.24836587274732	8.0829219399688	0.385063642702576	0.0966208758676867	0.414371190557596
Merged-chr7-25276206-2	chr7	25275706	25276706	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-5973.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	2.89141586163709	3.03971081037982	3.32860413953662	2.86942210497279	3.14504689144097	3.24014844670146	-0.00456132574841032	0.994832436232607	0.998961028701257
Merged-chr15-99030782-4	chr15	99030275	99031275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	884.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	8.53057123268182	8.58209044012421	8.03748877635964	8.29568444957801	8.51826273138514	8.08571887381784	-0.132354082950624	0.605621021092791	0.883581756351046
Merged-chr17-21536927-4	chr17	21536432	21537432	+	645.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144515, intron 1 of 4)	RLTR19|LTR|ERVK	-1054.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	3.87547844254276	3.90506206906954	3.78868888794373	4.1482559873128	4.35984638742435	4.21056155809934	1.12750760110411	0.0223507401759268	0.173696490897389
Merged-chr17-6782791-4	chr17	6782284	6783284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-4.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	8.58787677809134	8.92770731504098	8.3622371696976	8.31724818040057	8.56817145233787	8.20566732737157	-0.381688558982194	0.125913665194103	0.474643086904141
Merged-chr2-160619463-4	chr2	160618966	160619966	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-26431.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	7.02633818421423	7.44708148283071	7.06569262837646	7.21860891803263	7.44430785101302	6.91026586454298	0.0302695809146004	0.914262890933268	0.980912729144991
Merged-chr10-37400507-4	chr10	37400017	37401017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-261591.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.40172500654788	6.43753742871318	6.36161360184132	6.41357910994255	6.6134941176132	6.32268199787599	0.102540366489503	0.706787091196279	0.923152297809626
Merged-chr12-76837569-6	chr12	76837059	76838059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145927)	promoter-TSS (NM_145927)	92.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	6.03220821930814	5.91398854018427	6.05453402244711	5.99025858355408	5.99196636150387	5.74956199922679	-0.128924970405405	0.666618053733243	0.9082780021178
Merged-chr13-37751719-4	chr13	37751208	37752208	+	960.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74330.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.13095500684415	5.2054144531074	5.17368203817196	5.09956779157555	4.99804184219644	4.9202653368036	-0.335054019649802	0.354898015426569	0.741950053205044
Merged-chr4-116463713-2	chr4	116463213	116464213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042743, intron 1 of 29)	CpG	468.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	4.53088099471368	3.92739735344906	4.2274985995337	4.45021803826182	3.71808009463957	4.15631112532888	-0.298811059050128	0.597765821261632	0.88045915272141
Merged-chr1-155062222-4	chr1	155061716	155062716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21048.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.32765443702942	3.49152972923401	3.33198515900081	3.31429113922938	3.20520467616917	3.51199494094315	-0.18249824557317	0.765666465826972	0.942226326439462
Merged-chr8-23028775-1	chr8	23028275	23029275	+	1000.0	f0_c57.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6324.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.29769665468107	4.42627140977892	4.85246166383775	4.60060173683448	4.33510036395281	4.74273758708457	0.0634128821554903	0.891844147748282	0.974942585822634
Merged-chr8-57800560-4	chr8	57800058	57801058	+	991.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-147503.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	4.93844752951858	4.98767163813734	4.95366604517814	5.22099673862008	5.63509287005139	5.44628337174392	0.999873146009045	0.00613720213793936	0.0709354515201636
Merged-chr3-105066621-5	chr3	105066148	105067148	+	930.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029228)	promoter-TSS (NM_029228)	-196.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	5.42940441778463	5.6634958622473	5.25650301177808	5.56866025755133	5.59140684855065	5.35483530100464	0.0850198866864176	0.806443689113466	0.954171808010888
Merged-chr9-108491436-2	chr9	108490936	108491936	+	639.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008483)	TTS (NM_008483)	760.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	7.09574016302389	7.28506692783264	7.25291992729488	7.34267313531792	7.39648580133777	7.61524043125035	0.354256953619803	0.137581288252389	0.495782776512872
Merged-chr4-46580921-3	chr4	46580393	46581393	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	MMTV-int|LTR|ERVK	-14453.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.25031247912356	4.16831681238531	4.76739927024431	7.89123780429638	8.4033611028838	7.42487293064414	11.1516590349341	4.14823933995599e-20	2.8062333251956e-17
Merged-chr7-67422930-2	chr7	67422430	67423430	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-50072.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.00875268605806	2.98267740966453	3.04519638792543	2.98530368026934	2.79099426160436	2.81189087542981	-0.70819566500712	0.309031745732606	0.704802606494279
Merged-chr13-33076334-3	chr13	33075824	33076824	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-7779.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	4.31756788225063	4.28779710800853	4.2181020941019	5.34626552404417	5.35542108656573	5.19517444562954	2.37641091831644	1.09775072327206e-08	9.86410822700016e-07
Merged-chr7-128524223-4	chr7	128523681	128524681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013863, intron 1 of 3)	CpG	598.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	8.71698605550141	9.29352392310687	8.69431699748051	8.74176129194406	8.81392857685863	8.76827525054912	-0.224421087045517	0.364150333802009	0.749591060783653
Merged-chr2-90579258-4	chr2	90578774	90579774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1373.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.90667546304644	7.77114657235151	7.89566196992556	7.86968862136925	8.01863912696993	8.00461221882441	0.155174747794139	0.468866743658839	0.818752663318459
Merged-chr11-98916750-2	chr11	98916250	98917250	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 8 of 11)	B2_Mm2|SINE|B2	8599.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	4.42897813961129	4.37841755084825	4.77485615749591	4.26044890140262	4.41671444953719	4.28128149138675	-0.51586521433062	0.258592060019634	0.656162466533417
Merged-chr19-41384632-3	chr19	41384164	41385164	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	406.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.62541271731831	8.92205365728099	8.44287104789875	8.82093126570218	9.18043155149559	8.49221072102304	0.255259470555013	0.33759661923537	0.727494354060464
Merged-chr7-101230455-4	chr7	101229943	101230943	+	832.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	71645.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	5.41110443356473	5.13324572119002	4.76852366440113	5.12593457060674	4.94999324364142	4.70632902573419	-0.416191852531022	0.322165970358658	0.715589724600332
Merged-chr5-135616791-2	chr5	135616291	135617291	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15863.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.59539520626429	4.59784276364443	4.82477562654677	3.62331873335166	3.71190144619732	4.04125708262291	-2.58961744950572	9.98875659536778e-07	5.42168596730178e-05
Merged-chr3-132103588-3	chr3	132103102	132104102	+	878.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	18310.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.11417968973816	3.06465446757585	3.6514506703497	2.98934405419961	3.19281289734579	3.48067499681862	-0.263823768530935	0.709119620638082	0.923909555179111
Merged-chr11-95689277-2	chr11	95688777	95689777	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22320.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	6.2326382436824	6.41417041423412	6.38341595873259	6.23820015357669	6.23463685069486	6.04823607651222	-0.267802448833305	0.339610951632221	0.729313720985741
Merged-chr2-153084409-4	chr2	153083904	153084904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18449.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	7.76551977325183	7.47933196845061	7.18474107393307	7.7331858937501	7.71165706542599	7.68369787376451	0.292554832209454	0.248847116640784	0.645843447218383
Merged-chr1-152529748-2	chr1	152529248	152530248	+	891.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	95469.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.30022078582865	7.15495437232727	7.18211891494587	7.48755134038711	7.49834928602528	7.37861187186889	0.361041021943315	0.114952767636016	0.45263060237827
Merged-chr3-146156390-4	chr3	146155887	146156887	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6213.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	7.11711298744572	7.19708412942043	6.99608432932889	6.94540455849515	7.20696650184813	6.71966629631659	-0.187928248397795	0.479042299709941	0.823998431318037
Merged-chr16-13903118-4	chr16	13902643	13903643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	2.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	7.70701116258601	7.91014559543399	7.8700770419669	7.95342582838158	8.04926171952481	7.78532489652753	0.154562831554956	0.488785337531938	0.829423271678195
Merged-chr15-9129249-3	chr15	9128750	9129750	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11204.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.38311205786822	5.74731495975313	5.59413726478075	4.93146964076523	4.91924024920202	5.18569422527654	-1.16274801750327	0.00135367282828735	0.0228385386833258
Merged-chr6-113857676-4	chr6	113857213	113858213	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	33826.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	5.36315340245694	5.19477824982515	5.51087101720322	5.9054569379638	5.67163590483275	5.6297015724505	0.737147734502497	0.0278145052132222	0.199087064023633
Merged-chr6-52158830-3	chr6	52158363	52159363	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	339.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	6.19521917165947	6.17546117830904	6.22889926831407	7.06483816303069	6.80095437101702	6.84694632647865	1.1376822105382	1.77919568018223e-05	0.000660318082768079
Merged-chr4-106881255-4	chr4	106880776	106881776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-30194.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	2.59506369695219	2.62586463585932	2.85695323913643	2.80194430618751	2.41495906211696	2.92965092446456	0.190250547381062	0.814222352783004	0.956174647698565
Merged-chr8-26966674-4	chr8	26966149	26967149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10687.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.83165839679554	6.87062167928509	6.67553878422286	6.38063259502439	6.61088233112828	6.97978339787491	-0.199173635700124	0.486338006344982	0.827787358997531
Merged-chr13-35941125-4	chr13	35940635	35941635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26771.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.56061379681889	4.72518369186957	4.71701908341922	4.46447432226896	4.51779524982289	4.31677391852796	-0.550189566517652	0.197901057237373	0.586043439320662
Merged-chr10-6417871-3	chr10	6417364	6418364	+	946.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-340729.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	3.10268763251156	2.98799544668784	3.18062052931299	2.61714965390307	2.48377609276297	2.65187485618992	-3.14626276849228	0.00035458511429205	0.00800008627711845
Merged-chr19-23142528-2	chr19	23142023	23143023	+	924.0	f0_balb.idr|f0_c57.idr	intron (NM_010638, intron 1 of 1)	CpG	1297.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.18896063352213	6.5203131087994	6.11047129483664	6.57738412052448	6.42998496692669	6.43890412516466	0.306041764399663	0.289276313458981	0.686873369582938
Merged-chr14-25301788-3	chr14	25301324	25302324	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157361.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.88805989564019	2.97415540890487	2.98082822457075	2.58632509944981	2.78225513523613	2.93643233778145	-0.880362297777422	0.235066756756614	0.631254952273821
Merged-chr15-79686207-2	chr15	79685707	79686707	+	816.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	1665.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	3.44188801102503	3.47658409759012	3.30580983809793	3.53592943953517	3.12784856672888	3.54505119370242	-0.00618594788084791	0.992166536444115	0.998427455457837
Merged-chr13-9766239-3	chr13	9765741	9766741	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199141)	promoter-TSS (NM_001199141)	-920.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.36031114086901	3.13261879239296	3.41615766912441	3.51406638402418	3.29923969623418	3.26044580297296	0.233238900321175	0.70845797562487	0.923708659245088
Merged-chr7-83883161-4	chr7	83882690	83883690	+	898.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	1151.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	6.34242216975112	6.50635634037195	6.42261580530194	6.71877037565004	6.47793044668255	6.68670435488943	0.322707389273808	0.22928049383276	0.624749364077556
Merged-chr13-111821935-3	chr13	111821430	111822430	+	935.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-12937.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.04442960652518	3.19873225427801	3.25073839627423	3.18281806517863	3.19839459284439	3.26595323102973	0.211486474553759	0.737912215326579	0.933858424870961
Merged-chr5-92093899-4	chr5	92093408	92094408	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-10164.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	6.15579649546549	6.59367545674256	6.43106294101103	6.64186135247081	6.76444837504	6.69582197967769	0.47310658967636	0.090820445034331	0.401029301331742
Merged-chr1-191575651-4	chr1	191575160	191576160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	24.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	7.14014535180758	7.30758046735975	7.03850330675119	7.04448387576031	7.16194548517188	7.185460340421	-0.0628096568352552	0.795096109386739	0.950988343345385
Merged-chr5-53995388-4	chr5	53994859	53995859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3164.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.33940136409373	4.96185230816284	4.96377084170775	5.18037107577812	4.93071763812447	5.1007735337128	-0.0791977841320748	0.837313679314056	0.962133986386607
Merged-chr7-80079022-4	chr7	80078517	80079517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-3760.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	6.09273990143574	5.88394108801895	5.9376133502177	5.96271917924053	5.99295008650485	6.08914060317293	0.0627144205859591	0.831046571985451	0.96040466966768
Merged-chr5-9104134-4	chr5	9103640	9104640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3403.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	5.70769492101184	5.4531427090828	5.24708996170339	5.69030081581932	5.72288662770197	5.73176780059472	0.407833697988961	0.226505638302352	0.621481516556407
Merged-chr12-8501941-7	chr12	8501469	8502469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1960.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.75000557359997	8.263044338992	7.80292965963295	7.787874148066	8.19646199856006	8.05385542495847	0.0856388506520128	0.743724664123137	0.935764636709305
Merged-chr17-56007720-2	chr17	56007220	56008220	+	621.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145934, exon 1 of 14)	5' UTR (NM_145934, exon 1 of 14)	416.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	2.9406941316285	2.69622709532466	2.85533327878813	2.93404742776101	2.85767299987571	3.26907468718064	0.910649999017263	0.210448753350973	0.602621125710907
Merged-chr10-62337958-1	chr10	62337458	62338458	+	547.0	f1_balb.idr	intron (NM_010438, intron 4 of 21)	(TTG)n|Simple_repeat|Simple_repeat	2463.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	4.41560347591953	5.0091486645307	5.00242102932239	4.87588246303734	4.70289233334389	5.06628803703215	0.105065862194841	0.811801369767213	0.955319632415911
Merged-chr8-120536326-6	chr8	120535869	120536869	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151732)	TTS (NR_151732)	512.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.4482937580591	5.70209807235857	5.808244693641	5.72714480963243	5.52343161549439	5.8213592742765	0.0602374027219165	0.855773739334236	0.966258544020232
Merged-chr2-20648465-2	chr2	20647965	20648965	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177630, intron 2 of 17)	intron (NM_001177630, intron 2 of 17)	128952.0	NM_001177631	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	2.14223056988468	2.17979064081104	2.35095769918534	2.13596757629001	2.16790225014268	2.16639575583346	-0.474515163438482	0.588502978573727	1
Merged-chr13-95032254-2	chr13	95031754	95032754	+	691.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 17 of 19)	MTC|LTR|ERVL-MaLR	55910.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	6.26554603293527	6.71959967522711	6.12175581923255	6.04506594293602	6.55916520143278	6.09055820537299	-0.2285697735541	0.498567034802696	0.833948453751387
Merged-chr15-79329076-2	chr15	79328576	79329576	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	-705.0	NM_001199023	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	6.51905639113838	6.37576069995255	6.04251114818703	6.41195527473382	6.27812320835392	6.03148573111285	-0.134794985270733	0.65855403563281	0.905014667687917
Merged-chr1-134801964-4	chr1	134801449	134802449	+	836.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	1772.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	4.91465023118424	4.96060654580402	5.03781860567623	5.00247739772097	4.84536058574672	4.68625749435556	-0.245807674430906	0.525462768978113	0.849019885443792
Merged-chr5-142816715-5	chr5	142816235	142817235	+	790.580017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	652.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	6.4235867480555	6.46451261324888	6.95785071710494	6.78303072302719	7.12071547944096	7.37761618686237	0.747681202358881	0.0143301254843934	0.128758765527915
Merged-chr6-94283340-2	chr6	94282840	94283840	+	686.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286784, exon 1 of 23)	5' UTR (NM_001286784, exon 1 of 23)	577.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	4.15989325744579	4.21151079536143	4.52718941284547	3.48153032076785	3.24361546412671	3.60243189353814	-3.09048451716654	8.20976135363024e-07	4.5571569227009e-05
Merged-chr17-83271635-4	chr17	83271092	83272092	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	56309.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	2.53258613629411	2.35113281091604	2.6275844805501	2.65383804732411	2.47902055783519	2.8210493018107	0.852934938710679	0.290606105513145	1
Merged-chr18-65678098-2	chr18	65677598	65678598	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-20170.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.99696070534228	3.7120482261094	3.94285557794649	3.81265005060251	3.90047755852208	4.01131757801524	0.062047072662138	0.904742403079871	0.978163753060287
Merged-chr1-131981795-4	chr1	131981263	131982263	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145977, exon 5 of 5)	3' UTR (NM_145977, exon 5 of 5)	11154.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.86532962906823	4.73148247955232	4.87917563002052	4.38588663850861	4.5151219297408	5.13661326275712	-0.262799265077876	0.564819015644956	0.866552670637515
Merged-chr13-74022324-2	chr13	74021824	74022824	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	12905.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.54421368647002	3.5031096831618	3.1760440334299	3.55141229522415	3.65323876348405	3.43618601204424	0.468316852801806	0.450173384402823	0.808173357988092
Merged-chr19-46524846-4	chr19	46524358	46525358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23210.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.85151397816431	7.41677350005526	7.2741705037342	7.49205221231521	7.62449885324484	7.09979341768536	-0.164073208358154	0.564916971505341	0.866552670637515
Merged-chr18-50125816-4	chr18	50125303	50126303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2398.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	6.28268037172068	6.38640225672119	6.43071158819549	6.31229806739339	6.40977616809173	6.6572601668004	0.155255211288263	0.575244146031145	0.870967954417344
Merged-chr13-96106618-4	chr13	96106118	96107118	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029210, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	25959.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	3.09780294514461	3.16002340917993	3.25690953103177	3.58977540843084	3.64495821976721	3.80643240280041	2.02538156869694	0.00110585062261648	0.0194577328413347
Merged-chr7-80836137-4	chr7	80835636	80836636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25972.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	8.22565028739434	7.94961518056262	7.6470199547756	8.03679924646078	8.33002315649055	7.79660817831966	0.157227940821708	0.560031699042199	0.865168019835518
Merged-chr7-35166279-2	chr7	35165779	35166779	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20106.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	2.50218314705551	2.36107063133882	2.67816324318549	2.54021530928247	2.3240705883321	2.56834139373145	-0.223928046480253	0.784729236346555	1
Merged-chr15-89177332-4	chr15	89176825	89177825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-3374.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	7.35525429870843	7.37880603651594	7.23847792474933	7.50916475562596	7.8718792565293	7.61470965709408	0.513377979490835	0.0317765942638123	0.216150804189643
Merged-chr15-27937629-7	chr15	27937149	27938149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	88199.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	7.73526058217339	7.60175864896512	7.32869804200556	7.13876856240546	7.1806433707335	7.14477163568709	-0.61795605979347	0.0107467115244316	0.105688783554573
Merged-chr12-41290005-4	chr12	41289503	41290503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	196054.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	5.53833455600636	5.54273264397728	5.5267036592745	5.81490834694412	6.05223600827492	5.6757695250077	0.608658876015405	0.0579039955414586	0.310984035436241
Merged-chr9-95571683-4	chr9	95571166	95572166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	11849.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.49042119398062	7.60222903524169	7.41050711579548	7.35982530988293	7.89894803817164	7.42430573679615	0.129018509874315	0.622844956218571	0.891249034616027
Merged-chr14-33247842-4	chr14	33247305	33248305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30982.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	7.45069574084678	7.72954927876935	7.33753284567439	6.88578854635929	7.06686721212478	7.24728047495544	-0.672463869773459	0.00884117954009511	0.0924075954242223
Merged-chr1-94582690-4	chr1	94582189	94583189	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214753.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	5.34478728124807	5.10124441454067	5.23057116007127	5.01163145911579	5.03381440849626	5.41295541040323	-0.154718460073161	0.678498962956537	0.913498554171186
Merged-chr7-80099983-4	chr7	80099461	80100461	+	701.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 3 of 10)	intron (NM_173011, intron 3 of 10)	15389.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	2.83914733845901	2.97750927599047	3.17695720569531	3.00781735947449	2.88932358428723	2.90038343219849	-0.310853344050328	0.654728515973281	0.903879916994704
Merged-chr12-85456010-2	chr12	85455510	85456510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17880.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.57355825163668	7.95391770962344	7.10131310997497	7.29615458061018	7.7858296979634	7.34880815593522	-0.140296964598618	0.650569650117217	0.90263121868461
Merged-chr4-150913984-4	chr4	150913467	150914467	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4046.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	8.47288443730665	8.84581272802398	8.24743921846171	8.45781400823482	8.73183015713794	8.13660563419329	-0.110989004024275	0.681724164019991	0.914844032574396
Merged-chr19-46610619-2	chr19	46610151	46611151	+	640.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	RLTR18B|LTR|ERVK	11545.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.54600349627893	4.15679938579433	4.50662018163631	6.06478492746136	5.67156381344451	5.05790468589285	2.70330277355131	4.76725266888053e-09	4.67775424613457e-07
Merged-chr11-107316989-2	chr11	107316489	107317489	+	910.099976	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-127608.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.5280810620351	7.46295607008014	7.12878009174794	7.23874369560267	7.57817659207095	6.80122062831054	-0.194600964098622	0.514567918475686	0.843107848235413
Merged-chr11-107483598-2	chr11	107483098	107484098	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	ORR1C2|LTR|ERVL-MaLR	4070.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	3.13166300547011	2.98877832859863	3.26503586982004	3.14231516837509	2.9613224969422	3.33563998001131	0.0843132542429842	0.899629283619527	0.976663232192754
Merged-chr9-21453189-4	chr9	21452698	21453698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	28290.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	5.70292867447835	5.35541374186691	5.70378507397719	5.22146852947467	5.49121005587712	5.5833940057464	-0.293034373623854	0.403341560379863	0.77875989555314
Merged-chr19-32211044-4	chr19	32210549	32211549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168526)	promoter-TSS (NM_001168526)	-36.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.1528211749004	6.29990161204929	6.13952052336654	5.29821264418186	5.23970795730182	5.57402261752413	-1.52733419723182	1.46372561873383e-06	7.5742339106719e-05
Merged-chr16-17410430-4	chr16	17409913	17410913	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-4099.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	6.78507173643449	6.82420442724798	6.72206450613372	6.16680458689113	6.38686153375231	6.07659659642202	-0.886276181386719	0.00126148251387669	0.021584502779077
Merged-chr11-84820618-2	chr11	84820118	84821118	+	736.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177564)	TTS (NM_177564)	-1103.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	2.93743219536255	2.85840879776026	3.04783197320114	2.95334479647416	2.86369344155604	3.38752678772636	0.605091728018184	0.395107123772706	0.772579826044138
Merged-chr2-36214240-4	chr2	36213732	36214732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.77045525952221	5.97928318817382	5.23694767302216	6.01373336361535	6.08030992669671	5.63740381728581	0.388970280328092	0.296260730369186	0.693022144754045
Merged-chr11-54090494-2	chr11	54089994	54090994	+	864.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL-2a|DNA|hAT-Tip100	-10430.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	4.14941869177306	4.11570238877751	4.23365407664795	4.41541684216057	4.25062978389982	4.30146032361886	0.437948032870273	0.337643659505468	0.727543075805154
Merged-chr5-134688163-2	chr5	134687663	134688663	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 1 of 15)	intron (NM_010717, intron 1 of 15)	427.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	4.11416757365479	3.55227980162564	3.73442673178553	3.86745227951378	3.60534342131173	4.05059455090357	0.0669426038834746	0.908639054776877	0.97927672033099
Merged-chr16-33742707-2	chr16	33742207	33743207	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-51330.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.16971070207373	3.29795018259823	3.38843201468881	3.35489026682018	3.40832239189867	3.56405868732505	0.614082934469786	0.309904712669927	0.705462734304293
Merged-chr18-34886656-2	chr18	34886156	34887156	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	25449.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.23703830428183	3.97624891999713	4.25260935579521	4.31046185551856	3.97343787563574	4.48505993309387	0.289783340375465	0.562028425135434	0.86560636450104
Merged-chr4-155735110-2	chr4	155734610	155735610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101506, exon 1 of 4)	exon (NM_001101506, exon 1 of 4)	306.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	7.13249844835552	7.01523479000015	7.17907794109933	6.89280591092623	6.68037660186044	6.68041681639951	-0.540892436774432	0.0303072461516193	0.210360805620949
Merged-chr7-46735068-2	chr7	46734568	46735568	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2465.0	NM_011316	20211.0	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	2.76008731661943	2.33861801363798	2.59924031550203	2.31637054414529	2.19865902385353	2.61172398166671	-1.19001072721675	0.188167039540419	1
Merged-chr16-14129201-3	chr16	14128707	14129707	+	850.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 17 of 26)	intron (NM_001081154, intron 17 of 26)	30067.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	4.58754463030523	4.37438031764508	4.3950438477635	4.28321742502771	4.24947060695148	4.23554693677178	-0.530680169269942	0.235328648076765	0.631536893333007
Merged-chr19-55934129-2	chr19	55933629	55934629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001331147)	TTS (NM_001331147)	38808.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.75155211566252	2.52950563515649	3.0958844536228	2.45814033854019	2.48750016504338	3.00675016546301	-0.686958028047598	0.425923875495398	0.793463399937346
Merged-chr13-93303728-4	chr13	93303234	93304234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-23.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	7.98542360695845	7.99463513374455	7.62039302582601	8.03398057353263	8.10920949541042	7.75231772103329	0.134931609575441	0.578788191410855	0.872437129840066
Merged-chr14-31669352-4	chr14	31668854	31669854	+	868.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28297.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	4.56191677275069	4.43284229517483	4.7043273329553	4.25641458598297	4.14560092809658	4.08364324098062	-1.04972982187591	0.0218060141302118	0.171060132341535
Merged-chr17-66094942-3	chr17	66094436	66095436	+	573.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	6623.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	3.53896383989958	3.49945985575049	3.38507681116128	3.70731044626485	3.44417557981883	3.45779353734867	0.226140466877198	0.698561285158494	0.920392761604545
Merged-chr11-118179403-2	chr11	118178903	118179903	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	33339.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.49356249108288	2.5294799374435	2.72579220835413	2.4967052682302	2.62407087150886	2.85636587946053	0.448537543404349	0.567075968989774	1
Merged-chr1-184851908-4	chr1	184851358	184852358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6011.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	6.72456694843824	6.57939423808357	6.67019592745213	6.61810508374908	6.42789499628407	6.52746087388594	-0.215304955478693	0.409082384839582	0.782496023117205
Merged-chr16-27435102-4	chr16	27434595	27435595	+	963.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 5 of 9)	intron (NM_001025615, intron 5 of 9)	46139.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	4.56386389897209	4.86225695999316	4.85544682839444	4.70755992992257	4.69481591058998	4.95492529346343	0.0409349398289529	0.920408662961258	0.982360480259154
Merged-chr10-111446456-4	chr10	111445958	111446958	+	967.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26769.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	3.82088969155154	3.32008396836577	3.51498247098999	3.74628112924722	3.50783330438928	3.69484992067779	0.269011034495982	0.654159774609905	0.903708984834566
Merged-chr7-58829352-4	chr7	58828879	58829879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009728)	TTS (NM_009728)	171177.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	4.69386125338056	4.7311741679054	4.71217274149009	4.75664751988769	4.5502646421417	4.88878069020437	0.0357173994540398	0.93015555515887	0.984448052988905
Merged-chr5-122762359-4	chr5	122761887	122762887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 2 of 16)	PB1D9|SINE|Alu	17023.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	7.09638711956601	6.87114231596194	6.5526001676736	6.6001568756735	6.69084328739406	6.46246914014317	-0.430930903087993	0.127105240338284	0.476404181894952
Merged-chr3-104863855-4	chr3	104863337	104864337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253702)	promoter-TSS (NM_001253702)	668.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	7.54940684338149	7.77469398801698	7.46413532006103	7.61906257355567	7.85568190041347	7.68689026036392	0.172912327676642	0.461885253047201	0.815107818354545
Merged-chr19-55577604-4	chr19	55577113	55578113	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360432)	TTS (NM_001360432)	124591.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.77089582830439	4.41991847788658	4.50916057680884	4.45112995133156	4.36428575242613	4.65643654777188	-0.226226230718759	0.608402949839588	0.88499088740025
Merged-chr19-40611585-2	chr19	40611085	40612085	+	841.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304721)	promoter-TSS (NM_001304721)	630.0	NM_026260	67590.0	Mm.60758	NM_026260	ENSMUSG00000025008	Tctn3	4930521E07Rik|AI197391|Tect3	tectonic family member 3	protein-coding	4.92475073818228	4.82121964661262	4.59142139725194	4.62501709679377	4.68326762323618	4.70030233004641	-0.293654241607961	0.470585790972855	0.819523993651913
Merged-chr5-138684051-3	chr5	138683545	138684545	+	611.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	61186.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	5.68115615099515	6.02502518881668	6.07547705272207	5.76120942872403	5.46255585618977	5.9177529539643	-0.392758963844007	0.24335218902937	0.640502592040103
Merged-chr14-19969320-3	chr14	19968806	19969806	+	722.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	7387.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.62650675649514	6.82780351410295	6.57217958147641	6.80565290047372	6.86304559588125	6.8697828427272	0.248633701158077	0.330223100461478	0.721789606895393
Merged-chr18-38186055-4	chr18	38185565	38186565	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23697.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	5.87756336232991	5.84484429119101	6.02750873089208	6.08822492089177	6.13142220633619	5.97389380180734	0.27788606975105	0.342287539403578	0.731283521951228
Merged-chr4-47248446-3	chr4	47247947	47248947	+	804.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 4 of 39)	intron (NM_009928, intron 4 of 39)	40435.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	3.63358611091332	3.49290765881692	3.57058668906314	3.34435100858211	3.19347435254853	3.53580524140304	-0.801803139474425	0.182400966072793	0.565196424421292
Merged-chr2-71274999-2	chr2	71274499	71275499	+	930.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	63053.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	7.96176924040375	8.13978964773653	7.71590345852573	8.02218384495682	8.45579618721552	7.74450890717513	0.229226709545859	0.406306671924	0.780646569949505
Merged-chr19-6921972-4	chr19	6921469	6922469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-161.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	7.48435620217377	7.02740255945153	6.93140766466663	7.22583632030814	7.28114785325858	6.5292416352143	-0.166817620208684	0.604460277045768	0.883128436796324
Merged-chr13-32908416-4	chr13	32907917	32908917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10277.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	5.28546822533742	5.46379170639676	5.47242744103984	5.80942647563206	5.9844749896815	5.85683616615801	0.893564203914222	0.00501358260287027	0.0613395355417776
Merged-chr16-91402650-2	chr16	91402150	91403150	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-3585.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	4.00627081572704	4.19563091976752	4.865697944799	4.28860435361522	4.3234283304475	4.20614903131452	-0.327294395349133	0.535508238817372	0.853563387841999
Merged-chr17-50157543-4	chr17	50157049	50158049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32948.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	7.71296192164088	7.94197133235846	7.41405871113397	7.92466794072784	8.10767063456768	7.50421003334234	0.233671063549663	0.397167731700168	0.77406346769465
Merged-chr15-58990325-3	chr15	58989833	58990833	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	56523.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	6.05976249011889	6.2052330999888	5.93419042917791	5.58234972396842	5.14306656182587	5.52200482395863	-1.20274029823325	0.000322056028570378	0.00738430367188867
Merged-chr17-33817742-4	chr17	33817243	33818243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6819.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	8.10723793765193	8.04114513499862	8.07064442231918	7.76824488723131	7.82116918409935	7.45110936182197	-0.533991859476733	0.0194619198707631	0.158545861426126
Merged-chr10-127646961-2	chr10	127646461	127647461	+	761.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 2 of 22)	exon (NM_009284, exon 2 of 22)	3975.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	3.22239000775681	3.0340818076211	3.52858674490047	3.42338666392549	3.32289571271077	3.87983596646028	1.07929710523076	0.106320660537699	0.435306279684142
Merged-chr19-47621710-4	chr19	47621204	47622204	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164639, intron 9 of 17)	intron (NM_001164639, intron 9 of 17)	41685.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	3.00701875967962	3.12043964269628	3.42113024389362	3.09902942429597	2.99990266717537	3.539983141457	0.158792785469456	0.819092280859599	0.957209935971094
Merged-chr7-100537061-4	chr7	100536553	100537553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-47.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	7.61644546932786	7.66120485783792	7.21395048832585	7.26752177329381	7.43078850087778	6.94197426478083	-0.413180182718837	0.12873405285737	0.479799601167289
Merged-chr4-19570110-4	chr4	19569597	19570597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356481)	promoter-TSS (NM_001356481)	11.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	6.66297726011935	6.6025335561268	6.62067356200736	6.36113813757726	6.2811208300598	6.51084307920816	-0.403630524293089	0.126257684402097	0.4751576722456
Merged-chr1-173412121-4	chr1	173411639	173412639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-8465.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.03610840810779	6.79800358241402	6.38652075057505	6.50825687313613	6.70136592681367	6.61431689058327	-0.262712445319472	0.370492080024708	0.754838358760403
Merged-chr4-101185469-4	chr4	101184969	101185969	+	939.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	79813.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.99103946366877	6.22808330673809	6.24013050145688	6.05489363957698	6.0996260138293	6.24063837744346	-0.0433146314127734	0.881087492830241	0.97262624933271
Merged-chr14-45669911-4	chr14	45669404	45670404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-11761.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.219992290878	4.79509663563383	5.05002275677828	5.53602256411777	5.54682481600129	5.65942655151962	1.08606699963708	0.0027601353039689	0.0395293181364276
Merged-chr4-44071947-3	chr4	44071441	44072441	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015828, intron 1 of 11)	intron (NM_015828, intron 1 of 11)	776.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	5.96718358755631	6.23104525538709	5.57580229468187	5.78686201340039	5.44685100215154	5.3850800461905	-0.739161829253508	0.0394276198594035	0.24660042235473
Merged-chr7-35750953-5	chr7	35750383	35751383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 2 of 18)	intron (NM_178704, intron 2 of 18)	3571.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	5.42450419903612	5.51780668341907	5.61610693912012	4.98914385367476	4.87449876387685	4.76507567998407	-1.30217758314428	0.000355918829076866	0.00801900392540175
Merged-chr13-97511034-5	chr13	97510552	97511552	+	983.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28351.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	3.38993067703658	3.48721789221686	3.33545724179955	3.22124789007187	2.99382358645107	3.35108330203042	-0.904112907548508	0.159144739772632	0.531158781765317
Merged-chr14-16373012-2	chr14	16372512	16373512	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	7806.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	3.71433137362343	4.16347738065005	3.66470903996037	3.74637229335148	3.57094469106771	3.94244566718895	-0.382438854232499	0.505895840242062	0.838177729332582
Merged-chr17-6957884-2	chr17	6957372	6958372	+	628.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 2 of 3)	intron (NM_147155, intron 2 of 3)	3284.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	3.71772208265926	3.36414531054402	3.34761908974492	3.88182712866618	3.85151020089125	3.54396603016769	0.953408780001968	0.115408687402651	0.453631539581451
Merged-chr9-118661342-2	chr9	118660825	118661825	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	-50367.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.77948278295636	6.74361722120117	6.84889900990683	6.70580616125503	6.83321782245979	6.57238204477855	-0.11135302471925	0.663264129901064	0.907115084168437
Merged-chr18-77792255-3	chr18	77791754	77792754	+	877.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	3.34618475197972	2.87079029134381	3.06464128952664	3.15630394581804	3.04187103515537	3.13779020077155	-0.00399457293977835	0.995386290255825	0.998961028701257
Merged-chr13-37482783-4	chr13	37482291	37483291	+	768.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.09595101632348	5.17448300112475	5.58059517530161	4.82977220676725	4.78776924497585	4.81059730037171	-1.02458144523076	0.0090238169100947	0.0937796626019023
Merged-chr12-71342488-1	chr12	71341988	71342988	+	717.333313	f0_balb.idr	Intergenic	Intergenic	32604.0	NM_001190466	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	3.77767270465743	4.32158572658464	3.53854581582235	3.10336745731309	2.92341154826339	3.24274179257927	-3.71346849723928	3.00838094380531e-06	0.000142066607021653
Merged-chr5-99976507-2	chr5	99976007	99977007	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077266, intron 1 of 7)	intron (NM_001077266, intron 1 of 7)	2431.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	4.38840340619683	4.34416876354544	4.44600447198417	4.78981831231101	4.45823418853613	4.55582219406348	0.540260991073183	0.213220691737894	0.606044992772247
Merged-chr11-71159654-4	chr11	71159158	71160158	+	956.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040696, intron 12 of 14)	CT-rich|Low_complexity|Low_complexity	-14954.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	4.09260626458481	4.08654926646577	4.27762814555622	3.54662888171976	3.74864133797741	3.89399968000311	-1.29733292636761	0.0145565376660264	0.129945326264856
Merged-chr7-109562378-2	chr7	109561878	109562878	+	650.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001326, intron 2 of 19)	intron (NM_001001326, intron 2 of 19)	42246.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	4.76859643084233	4.79526472600064	4.59372696133829	4.83386828035132	4.4894342397036	4.89302650490824	0.0270285551408082	0.948735283048773	0.988169196639905
Merged-chr4-43965166-4	chr4	43964664	43965664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7462.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	5.20325996920403	4.67356959990487	4.80407014218684	5.35139929838907	4.8547362869356	5.16069237549652	0.45515760745994	0.28285581232313	0.68075273348424
Merged-chr17-47784604-4	chr17	47784088	47785088	+	935.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-1156.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.45656628490108	3.88764439035731	3.76519012307595	3.51988390537455	3.38356112117368	3.52146603978817	-0.863057470624001	0.141905289124954	0.502902819434779
Merged-chr4-55597870-2	chr4	55597370	55598370	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65395.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.41109735527505	3.46258490840434	3.39766626178993	3.6589295901392	3.38713439433015	3.83157185389453	0.736604297427908	0.214780326254389	0.607977993080214
Merged-chr7-67380339-4	chr7	67379853	67380853	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7495.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.07192458055206	6.06684863802264	5.77017512701154	5.56989335218606	5.56544876867499	5.72692137929489	-0.666911883588163	0.0332164886669841	0.222319625885008
Merged-chr12-84759159-2	chr12	84758659	84759659	+	761.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 3 of 3)	B3|SINE|B2	13953.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	3.84411794464565	3.69788740780377	4.24564695003088	3.69522606735676	3.68442822264197	3.87321722176748	-0.602934725513489	0.277043976590247	0.674343034039447
Merged-chr9-119402565-4	chr9	119402088	119403088	+	931.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001313757, exon 1 of 11)	exon (NM_001313757, exon 1 of 11)	410.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	5.97239803111302	5.70206892588469	5.74139331729635	6.11624367618044	5.53317609510241	5.6677352853306	-0.0287149440096338	0.933875768220346	0.985628114538218
Merged-chr2-29655676-4	chr2	29655192	29656192	+	903.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	35972.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.99035597311696	4.06716415016456	3.86029074687587	4.27172307743451	4.02481490938847	4.17711020037279	0.514115708246618	0.297778612803121	0.694574687133744
Merged-chr13-120259752-6	chr13	120259178	120260178	+	813.455566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3417.0	NM_001310627	236546.0	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	2.80965580027355	2.70365924080281	2.95126313018784	2.79964185825729	2.62637159850613	2.66101075574098	-0.6627142189793	0.372758231911127	0.756573006167945
Merged-chr17-34303586-1	chr17	34303086	34304086	+	558.0	f1_balb.idr	Intergenic	B4A|SINE|B4	-2281.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.52438812388013	3.25334983545568	3.45738573941557	3.90685805200122	3.63414949234273	3.84628836118123	1.35029778910588	0.0210475550697201	0.166946378816207
Merged-chr8-66333543-2	chr8	66333043	66334043	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	MTB_Mm|LTR|ERVL-MaLR	-52758.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.89973231825176	4.73422809795943	5.00334709896238	4.87743407213539	4.64653392348324	4.92987265844536	-0.140929586508409	0.723761721225821	0.929128417950564
Merged-chr18-61767910-4	chr18	61767407	61768407	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178928, intron 1 of 18)	intron (NM_178928, intron 1 of 18)	18755.0	NM_178928	106877.0	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	3.40317557633753	3.52193871791376	3.72121044159688	3.39267642669726	3.35077562478546	3.42962040288359	-0.59727380969212	0.311267319526701	0.706465219571547
Merged-chr15-64046506-4	chr15	64046009	64047009	+	980.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13255.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.79649115728749	6.55720399393109	6.51791303149982	6.91036383867435	6.79021957803678	6.99334707728514	0.405829806229133	0.120992804330351	0.465165146362326
Merged-chr16-4743420-4	chr16	4742913	4743913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	IAPLTR1a_Mm|LTR|ERVK	1800.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	6.97783271685763	7.0579741126931	6.90692120351333	6.57005278343797	6.46630131266622	6.33967650998016	-0.81426646568133	0.00152363161664549	0.0249957294080911
Merged-chr1-170897180-4	chr1	170896683	170897683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11643.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	6.73923459744887	6.74877241312448	6.85293409698462	6.50631536218939	7.0221560992404	6.8970353245932	0.0827814423606926	0.764149348911544	0.941958626520407
Merged-chr11-3913934-4	chr11	3913436	3914436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	728.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	5.50785396120382	5.59264468072567	5.81077058466871	5.18957490554834	4.89244995713626	5.40900607643051	-0.92673782224492	0.0115079044557787	0.111035611470675
Merged-chr2-27728938-2	chr2	27728438	27729438	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	18355.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.95223194797882	7.20955864212545	7.42726820186549	6.95410104098373	6.98123162964661	6.96158131106018	-0.359898186807686	0.16326670948805	0.537044711519546
Merged-chr7-43538743-4	chr7	43538248	43539248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5577.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	2.98684992654741	2.90816792656102	3.24461379035717	3.06526665882136	2.93031222824018	2.78144539067265	-0.534449906602008	0.453911776376473	0.809981786389402
Merged-chr14-74855614-4	chr14	74855057	74856057	+	893.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	RSINE1|SINE|B4	92320.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.73581660432169	3.26572569146895	3.75394242615943	3.5851959950959	3.41866355165672	3.6740239757783	-0.14780447663258	0.808358614766097	0.954683711776353
Merged-chr2-154604386-2	chr2	154603886	154604886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-713.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	7.80154037677178	7.94740750969977	7.66482896903295	6.90161005010262	7.02763299934442	6.357504328665	-1.48577973455755	2.62737127607035e-07	1.66806271131749e-05
Merged-chr4-133622664-1	chr4	133622164	133623164	+	604.0	f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	10765.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.6071220723062	3.51555173677277	3.46478136882234	3.57575426302165	3.37049713098453	3.2397020373173	-0.470453412059136	0.434447211836569	0.798410009305253
Merged-chr16-16526888-4	chr16	16526414	16527414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	497.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	8.68112520300619	8.98679379152975	8.31574668093924	8.59286782750045	8.88565876305725	8.15926321157768	-0.149665900425044	0.601475211813079	0.881943853341137
Merged-chr2-165948232-4	chr2	165947758	165948758	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44379.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.73733407797758	7.61297212599083	7.50251468707059	7.58401879813215	7.88318013183423	7.39836276838993	0.0336614130665786	0.892643719239621	0.975146620821922
Merged-chr15-81663929-4	chr15	81663447	81664447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110362)	promoter-TSS (NR_110362)	58.0	NR_110362	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	5.98072575886129	6.19468886380652	5.7751687245661	5.87518973580042	6.20092083191078	5.7835798616221	-0.0445449778908676	0.891241473753344	0.974793897524426
Merged-chr5-112282893-4	chr5	112282368	112283368	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	6177.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	6.61139007603165	6.6086286290396	6.4696849730928	6.55547839688634	6.20084165671094	6.59837222027789	-0.186607634751483	0.506400300594999	0.83842879061576
Merged-chr11-63045992-4	chr11	63045500	63046500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15659.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	8.3943479802961	8.67315111665542	8.1191639623993	8.39629773304251	8.70122127732676	7.94210573680166	-0.0393311644731484	0.889531240851324	0.974240173857916
Merged-chr16-49165950-4	chr16	49165463	49166463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166210, intron 33 of 40)	intron (NM_001166210, intron 33 of 40)	108477.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	4.53174670610343	4.35451225348056	4.08230119955988	4.23799724783467	3.99338144600147	4.20158218404046	-0.550452190523652	0.257076034048838	0.654372499652352
Merged-chr3-27228242-4	chr3	27227739	27228739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	45235.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.3821097049907	6.07191286047824	6.28523905828583	6.27649614031935	6.61974244953577	6.11041064654064	0.191853343487688	0.531830310126989	0.851833378497126
Merged-chr7-19091071-2	chr7	19090571	19091571	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 10 of 14)	intron (NM_032418, intron 10 of 14)	-3473.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	2.85121709600782	2.80786557944586	2.95042358970791	2.86332477848434	2.97477976527873	2.9031224126515	0.242724316880278	0.725823239195616	0.929724409589692
Merged-chr11-113430790-2	chr11	113430290	113431290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	135025.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	3.66293797385017	4.04958368381634	3.9242338098459	3.06120379261877	3.0800153293222	3.18266676615456	-3.39761920403305	3.42181010333962e-06	0.000158973743762525
Merged-chr18-69586701-4	chr18	69586191	69587191	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240531.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	7.10598940760045	7.07558320041922	6.76055520783709	6.59687383751508	6.92868799762057	6.46707217746963	-0.470567479068425	0.0962170589715142	0.413503048235839
Merged-chr17-31512268-4	chr17	31511740	31512740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021322, exon 1 of 11)	exon (NM_021322, exon 1 of 11)	247.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	6.97283323707056	7.16088343718762	7.45464735525078	7.16659700250643	7.08195563007323	7.1277241974944	-0.117749541038364	0.646396822482817	0.90099114147517
Merged-chr4-150002124-4	chr4	150001626	150002626	+	895.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173371, intron 1 of 4)	B3|SINE|B2	1110.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.03009017716691	4.05329361183904	3.90641812955393	4.04161829783099	3.99054291063639	3.87236452611932	-0.0868300133393324	0.861307818903381	0.967789299492425
Merged-chr5-140744197-2	chr5	140743697	140744697	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 4 of 7)	intron (NM_173405, intron 4 of 7)	20070.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.23132765918824	2.03253029899256	2.23172725940243	2.06870585450663	1.86838283236137	1.89692137632679	-1.83233592866206	0.0723723771302848	1
Merged-chr19-29522962-4	chr19	29522444	29523444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	662.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	8.12045499120725	8.06068554090808	8.092097427688	8.09014837176617	8.15865414780061	7.94942912724758	-0.0247080882056812	0.90643600380812	0.97873782855567
Merged-chr5-36576412-4	chr5	36575921	36576921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5976.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	7.34380389898407	7.31811338617935	7.11144747201625	7.34715719935547	7.81237779798138	7.38584614792896	0.405141392378312	0.119307017751513	0.461764165320091
Merged-chr1-36073379-4	chr1	36072874	36073874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	MLT1A1|LTR|ERVL-MaLR	4974.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.7770939886585	7.50027430921845	7.25711667887951	7.32774949842072	7.64013438273745	6.96239724342999	-0.268774786380152	0.357103729714063	0.743726917541594
Merged-chr1-74227505-4	chr1	74226991	74227991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9026.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	6.85064007287154	7.03354826175414	6.89168914874836	7.0091281328003	7.06962332634699	6.97808316884273	0.140763898882833	0.562390947566876	0.865732262134287
Merged-chr5-9104969-2	chr5	9104469	9105469	+	725.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	ID4|SINE|ID	4232.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.03197371559861	2.66742250020353	3.1181051961779	2.71243291931226	2.77545174219336	3.02253912637665	-0.534320959816418	0.478723802978381	0.823877436931996
Merged-chr17-5770798-2	chr17	5770298	5771298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27859.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.24885169966662	6.0259202032835	6.13050233620186	6.28896714046021	6.29693721507071	6.03276344841343	0.138419260754598	0.63293799074469	0.895793719109473
Merged-chr1-151932369-4	chr1	151931861	151932861	+	863.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	157959.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.48660817950144	4.49758340067408	4.3220712623081	3.84302665125338	3.87364950668747	4.06451021419279	-1.487240018013	0.00207633446784378	0.0318231052496491
Merged-chr12-84450503-1	chr12	84450003	84451003	+	870.0	f0_balb.idr	intron (NM_134042, intron 1 of 11)	intron (NM_134042, intron 1 of 11)	521.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	5.19927428735693	5.65224484335486	5.43813231679587	5.29902830780854	5.16999267594327	5.35165568892904	-0.347967190873152	0.333038997885156	0.723935027979521
Merged-chr5-76184449-4	chr5	76183934	76184934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011626, intron 1 of 5)	CpG	554.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	6.75516081648223	6.69161925754692	6.79376644439286	6.82911467472483	6.37971112254365	6.61570790265371	-0.202967831754626	0.458493281144403	0.813056725672258
Merged-chr12-102290865-4	chr12	102290357	102291357	+	906.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	7216.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.2327871514882	3.06802978142851	3.05032498208583	2.97015799719837	2.95334063283924	3.23724281231053	-0.306170975754372	0.648224081738997	0.901726822360623
Merged-chr4-59366348-4	chr4	59365805	59366805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	72328.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.65403970528109	5.95955849670124	5.45895077998459	4.89336367452322	4.73539989276124	4.9861778725821	-1.72934639723338	3.37351939390607e-06	0.000157081030625706
Merged-chr15-67187520-4	chr15	67187027	67188027	+	616.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10645.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.43829716625461	3.23479112969427	3.77436236238442	3.65920980380182	3.58721886144724	3.18036156115772	-0.0103397092868667	0.98756942699482	0.997223245230291
Merged-chr3-100684786-2	chr3	100684286	100685286	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010763, exon 1 of 13)	exon (NM_010763, exon 1 of 13)	687.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	5.0192804689473	5.13339514585095	5.10116308774777	5.06171576827448	5.03377444548779	4.75268170473971	-0.251950305022262	0.505343619298608	0.838055364884185
Merged-chr3-116638525-1	chr3	116638025	116639025	+	795.0	f0_c57.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23938.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	6.3919786454992	6.43996104548369	6.5671799972559	6.69760606672476	6.7849594217711	6.82915864168623	0.489272182930817	0.0570830060105045	0.30808605851476
Merged-chr18-53229341-4	chr18	53228839	53229839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16323.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.72083228891293	5.94592048255597	5.57457147537898	5.67698030883929	5.94304204431388	5.1659235779987	-0.200509679289449	0.596859203340646	0.880063799680126
Merged-chr12-33311284-4	chr12	33310849	33311849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	L1MB5|LINE|L1	8834.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.2947645707608	5.66186811613582	5.97312162147518	6.37313874509292	6.1452734978521	6.29197141191232	0.448116569166939	0.169783504735878	0.546873733675896
Merged-chr14-105176389-3	chr14	105175890	105176890	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	937.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	6.33656913950177	6.42656701447238	5.82523008289382	6.36717540509208	5.97375834347004	6.22145120044892	-0.0700012518781479	0.830238515598201	0.960219727001139
Merged-chr15-58133903-4	chr15	58133411	58134411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	1171.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	7.24236993710796	7.70433901751483	6.91941715296874	7.13763414783274	7.79126507461293	7.1745130305061	0.110434118381345	0.735482718009224	0.932744628746236
Merged-chr1-177176304-2	chr1	177175804	177176804	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	72463.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	3.88823085447504	3.67534902091333	3.9201355300484	3.85240327413873	3.78316564744194	3.68194389185047	-0.163413423854465	0.758436307614197	0.940145765228317
Merged-chr9-13245728-4	chr9	13245220	13246220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033181)	promoter-TSS (NM_001033181)	21.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	5.09260188780932	5.19030845848479	5.16615069121262	5.12233570331739	5.15623893988585	5.05960476034597	-0.0674804096207615	0.849606431784873	0.964686793473289
Merged-chr6-42391461-4	chr6	42390967	42391967	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-8771.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	7.39834963749453	7.43230170397406	7.03012240579762	7.290942702832	7.49559995133373	6.7628536282883	-0.110131424348637	0.710381605860649	0.924293540432205
Merged-chr5-125383548-12	chr5	125383042	125384042	+	910.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6475.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.02381571963615	3.81410123274329	4.21156780489492	4.08959312280477	4.26482157450842	4.86856122573095	1.13926913540079	0.0331497967468024	0.222078216430533
Merged-chr6-39206618-1	chr6	39206118	39207118	+	1000.0	f0_c57.idr	exon (NM_001033430, exon 1 of 20)	exon (NM_001033430, exon 1 of 20)	155.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	8.36247424294632	8.44908130670132	8.15825110518451	8.09439481672151	8.04570380027652	8.13933646746483	-0.340290616739568	0.110872165853469	0.444841551070303
Merged-chr17-88452606-4	chr17	88452109	88453109	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	L1Md_F2|LINE|L1	11905.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	2.59078288298477	2.61779714486942	2.87688014045418	2.3427748083247	2.43649476862	3.05780206229303	-0.232451660730103	0.795886129461575	0.951374777848283
Merged-chr16-36707164-2	chr16	36706664	36707664	+	992.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	13186.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	4.07387582234306	4.05370308503593	3.80145671572609	4.16074828622918	3.88185280523136	3.92541687435923	0.0158145959939622	0.975451753968468	0.994491080612734
Merged-chr11-69758652-4	chr11	69758165	69759165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-32.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	7.92028719428457	7.6110010880772	7.45243502498209	7.6364566687803	7.8190938178176	7.30406483482627	-0.0996935815739036	0.709263347629998	0.923935571500538
Merged-chr6-120539313-4	chr6	120538833	120539833	+	837.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8034.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	2.88157796305294	2.90759960468502	2.96496778098208	2.72308540094103	2.63812731465406	2.53127504641043	-1.52650809818661	0.0486758277494921	0.280059346935399
Merged-chr11-51889796-3	chr11	51889301	51890301	+	978.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-32171.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.36526650982073	5.43384241104045	5.49699619823785	5.14275789906651	5.17258400315827	4.93636053326446	-0.668340632151491	0.059259538216273	0.315353521098724
Merged-chr5-134933035-4	chr5	134932393	134933393	+	836.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359536, intron 2 of 5)	intron (NM_001359536, intron 2 of 5)	369.0	NM_001359537	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	5.3039089573006	5.1290495416249	5.04317950603283	5.06986121808582	4.64294980975514	5.0017766570032	-0.554839990350998	0.158221078046717	0.529917060944743
Merged-chr2-45216713-3	chr2	45216199	45217199	+	825.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99257.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.8999741003298	4.76777110035421	4.72378740536644	4.62637510401322	4.55832273803429	4.49740353329445	-0.564163952746888	0.165694744347147	0.540863657924297
Merged-chr14-103037245-4	chr14	103036691	103037691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3388.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	3.97332451934994	3.68819847985423	3.59218184154349	4.05168195581575	3.82149188367565	4.03171420890847	0.621078700963811	0.254571958753367	0.651643384054634
Merged-chr15-78859916-4	chr15	78859373	78860373	+	860.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4344.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	4.73383779495601	4.58439845290751	4.71794099786815	4.96305009918721	4.77449184796352	5.00267220465645	0.529150495151295	0.182203976852504	0.564922625701201
Merged-chr1-36614788-3	chr1	36614303	36615303	+	855.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	MTD|LTR|ERVL-MaLR	-21471.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	5.21361738661217	5.07590518305209	5.21826637672196	4.97361333631674	4.9311348440216	5.58671370017418	0.0343131932155681	0.932039545800988	0.985035285260106
Merged-chr15-59720433-2	chr15	59719933	59720933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71779.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.31453381630177	5.49397300619874	5.65395405872106	5.07734150454812	5.06834120510573	5.30142261039149	-0.684786692012495	0.0540166769540852	0.298150557611643
Merged-chr7-80073946-2	chr7	80073446	80074446	+	593.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	1311.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.35272120728739	5.74519699937977	5.75110362817418	5.37670831599849	5.31716142770768	5.7882226167208	-0.239860063064364	0.506768664352155	0.838564323822494
Merged-chr13-67500527-4	chr13	67500044	67501044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007575)	promoter-TSS (NM_001007575)	-22.0	NM_001007575	238693.0	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	5.21051139034131	5.47763728857442	5.33148685925543	5.37104826026988	5.4304045121328	5.4253444803346	0.122198062692379	0.719889271212229	0.927960661644538
Merged-chr7-16387254-1	chr7	16386754	16387754	+	570.0	f1_c57bl6.idr	intron (NM_019748, intron 1 of 8)	intron (NM_019748, intron 1 of 8)	642.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	4.95299525767898	4.86557202084811	4.88924289944822	4.82599988601985	4.88651730986451	4.91778482862168	-0.0612466692915947	0.871536744652773	0.970223306350909
Merged-chr10-81409561-4	chr10	81409059	81410059	+	966.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-16.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	7.07809653528746	6.76172593488026	6.83461542672104	6.97522971293583	7.05282074198035	6.68566068190071	0.0341164710557254	0.89862308482547	0.976398924551551
Merged-chr16-16576721-2	chr16	16576221	16577221	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	RMER30|DNA|hAT-Charlie	-16502.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.40863556799271	3.48349623662084	3.3942382493821	3.65015375497868	3.69895440070415	3.46685934569882	0.665930162114998	0.247931505838866	0.645087077480937
Merged-chr2-118391400-1	chr2	118390900	118391900	+	639.0	f0_balb.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	2288.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	4.06647674598306	3.7666291826736	3.8898081843792	4.27767407106719	4.41299727924905	4.25521770424034	1.16090474769769	0.0185244304262507	0.153646412171797
Merged-chr15-59679881-2	chr15	59679381	59680381	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31227.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.11732115121503	5.99577493433419	5.60316849269242	6.02459327943767	5.96476243606991	5.72505247035353	-0.0325811432990345	0.92064568971641	0.982463724790289
Merged-chr2-160317978-1	chr2	160317478	160318478	+	554.0	f0_balb.idr	intron (NM_001033411, intron 2 of 2)	intron (NM_001033411, intron 2 of 2)	9516.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.0949555662006	4.19088875637567	4.39739329970389	4.4364362368502	4.29147991411005	3.99542701486825	0.0931361453404593	0.848080622295511	0.964318271116593
Merged-chr1-180303275-2	chr1	180302775	180303775	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27201.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	6.21039983622059	5.99851454048828	6.3632775486517	6.44829636591236	6.18662601210454	6.83019984866263	0.513511952189933	0.106607094064311	0.435916169724877
Merged-chr14-63146447-3	chr14	63145950	63146950	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007798)	TTS (NM_007798)	23988.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.7618561643486	5.00943738571014	5.06714478354341	4.60744486347514	4.82754280619483	4.81658860364755	-0.431351091699767	0.280996765164734	0.679156845994823
Merged-chr3-148987819-4	chr3	148987333	148988333	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33198.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.92218459605496	3.80164001796853	3.74617381857682	3.50778799738282	3.36041723800351	3.43073896574197	-1.42204252006835	0.0127351029542599	0.119237072380081
Merged-chr7-100432070-2	chr7	100431772	100432772	+	670.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 23 of 33)	exon (NM_001017985, exon 23 of 33)	-40719.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	5.36413418292981	5.41233006421329	5.3882469568742	5.489429876946	5.40522438372854	5.48097386598484	0.131036284932918	0.690623772032076	0.917915728386653
Merged-chr4-131977447-4	chr4	131976941	131977941	+	870.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 9 of 20)	intron (NM_183428, intron 9 of 20)	55670.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	4.66739454149066	4.39008710791309	4.62206065221753	4.35528335671111	4.82621725135625	4.60793989152545	0.136255093040116	0.759953136877613	0.940572672765463
Merged-chr6-85333990-4	chr6	85333472	85334472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178639)	promoter-TSS (NM_178639)	-550.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	6.41371338414954	6.34058693306653	6.53628765716909	6.41912856275907	6.58280815036402	6.70790868188496	0.233419167562785	0.387366147473612	0.767592160200622
Merged-chr11-110475164-3	chr11	110474663	110475663	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-3352.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.46185970735559	3.25072455753262	3.56925788144591	4.06658049005857	3.77767695557944	3.46857916461652	1.28607622525664	0.0351620990275187	0.230081195714823
Merged-chr14-31408830-1	chr14	31408330	31409330	+	577.0	f0_balb.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	8847.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.92395786834868	6.06460583607115	6.22324078397282	5.8942049334114	5.93538825576835	5.81445251109206	-0.316670582338057	0.290270045087857	0.687937278523183
Merged-chr16-49896376-4	chr16	49895876	49896876	+	921.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010581, exon 7 of 10)	exon (NM_010581, exon 7 of 10)	40722.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.51039182589332	4.71013967033442	4.42336682630627	4.58023360581365	4.53045172312681	4.84846337865566	0.215712444177507	0.616808216847088	0.888530486764078
Merged-chr11-23767323-2	chr11	23766823	23767823	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	3647.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	4.27051057011464	4.22952793833281	4.46368520343258	4.44576479539314	4.18420204609509	4.40571115310204	0.06922919050122	0.879460622327813	0.972118435413907
Merged-chr10-81450298-4	chr10	81449810	81450810	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22821.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	2.30233618291355	2.27417189558066	2.3707461923554	2.53363116385637	2.42134446379592	2.696466822871	1.51548828954307	0.0698136524989497	1
Merged-chr9-95508375-2	chr9	95507875	95508875	+	713.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	RMER15|LTR|ERVL	3621.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	4.32945215931328	4.3295758052226	4.5930664174602	4.58374915420371	4.41320118680185	4.58020158502039	0.276688161573916	0.526445018464252	0.849433518128594
Merged-chr5-121842864-4	chr5	121842363	121843363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6004.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	7.63137007224913	7.99097732709369	7.59777117820411	7.15344602127775	7.29790892790496	7.02207179146538	-0.862259536828504	0.000651469831257268	0.0129497137408635
Merged-chr8-11479923-2	chr8	11479423	11480423	+	622.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126558, exon 2 of 2)	non-coding (NR_126558, exon 2 of 2)	-1424.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	4.10819533936665	4.18704427871298	4.18202139057296	3.95323582532304	4.08358375242387	4.11173410668492	-0.310055660961976	0.515504676796468	0.843726062787128
Merged-chr6-128834626-4	chr6	128834144	128835144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-8329.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	5.12307004000065	4.83848501526181	5.35965873466825	4.63624895445819	4.90833078449493	4.88211755238944	-0.647159156326566	0.113601637380275	0.450207898796814
Merged-chr8-104118481-2	chr8	104117981	104118981	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	ORR1B2|LTR|ERVL-MaLR	-12608.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	5.03989250088079	4.83981782620816	5.20596545459783	5.1221763565336	5.05771718262875	5.26909133406676	0.250053980685545	0.504806403585712	0.837836810464043
Merged-chr10-121374381-4	chr10	121373871	121374871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029364, exon 3 of 14)	exon (NM_029364, exon 3 of 14)	9281.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.74956716609689	7.61202919212555	7.44295456243741	7.52501404764478	7.65024301154262	7.40250306892273	-0.112856001301963	0.631831384777642	0.895284049434373
Merged-chr4-155221291-2	chr4	155220791	155221791	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	1244.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.87505786389058	6.16022722657862	6.02108843301159	5.95886952995274	5.68562163634714	5.5946409882831	-0.469816060907312	0.138940833996421	0.497943722067999
Merged-chr6-137560608-4	chr6	137560103	137561103	+	916.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	10406.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	4.75693632362621	4.49556192620018	4.4774229745735	4.1578439184235	4.48499339965826	4.12656868283508	-0.794774423646007	0.093860371691973	0.408098365287193
Merged-chr10-86706926-2	chr10	86706426	86707426	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 1 of 15)	intron (NM_001003910, intron 1 of 15)	1115.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	7.06246541025372	7.48770047022555	7.23541228077628	7.24356973007854	7.56218013173005	7.49824429392707	0.24559957511686	0.341212024686609	0.730686899066382
Merged-chr13-12411491-2	chr13	12410991	12411991	+	649.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 16 of 44)	intron (NM_144835, intron 16 of 44)	16116.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	6.92694208121663	7.18647713659887	6.79021876252111	7.06624991938748	7.31454920194284	6.84899655491695	0.174363170573603	0.52665955505854	0.849587221577657
Merged-chr2-117119042-2	chr2	117118542	117119542	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.39128800911725	3.27845917268404	3.12619510356017	2.84195578378242	3.11426339740124	2.88370807888107	-1.39779426081246	0.0534135326778521	0.296322155115194
Merged-chr17-24721721-2	chr17	24721215	24722215	+	953.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002897)	TTS (NR_002897)	926.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	4.60804929256517	4.12368333499467	4.61395892397836	4.46456813491557	4.38143629097054	4.82421326695543	0.242065448062472	0.611483173220324	0.886122918847711
Merged-chr11-63791164-1	chr11	63790664	63791664	+	875.0	f1_c57bl6.idr	Intergenic	Intergenic	131120.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.71329438483501	3.45148649453542	3.60581693165366	4.09718693338526	4.13649152455544	3.79067811945008	1.39294607248108	0.0116446306167857	0.11192404116455
Merged-chr5-88959792-2	chr5	88959292	88960292	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-68174.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	2.75138238000508	2.75974547473122	2.77787276894223	2.55237145219403	2.53885947454018	2.7290880328709	-0.887398545602021	0.240135446131976	1
Merged-chr15-4026579-4	chr15	4026088	4027088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028266, exon 1 of 2)	non-coding (NR_028266, exon 1 of 2)	160.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	8.05213938822284	8.24073122463918	8.0077977203818	8.13898358266146	8.12099136762081	7.90905887807458	-0.0608385257744867	0.782266181299649	0.946484752418558
Merged-chr5-139402808-2	chr5	139402308	139403308	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3579.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	5.51211388642963	5.33761234503591	5.62356514169282	4.91834692396578	4.93922819098561	4.95034442182713	-1.13572550960087	0.00162623069501433	0.0263721309044538
Merged-chr2-128738876-2	chr2	128738376	128739376	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	39961.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.40078036571839	5.42597074560362	5.30923834935336	5.26901641064535	5.28353446361035	5.30960607561969	-0.193454889801684	0.566359080394512	0.867321286905744
Merged-chr7-127091290-3	chr7	127090801	127091801	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178901)	promoter-TSS (NM_178901)	-135.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	5.37804572420326	4.98098744952614	4.76077189566908	3.68183370336931	3.49845727424639	3.8760165337242	-4.45911619317615	4.11516284168738e-12	7.13363478606507e-10
Merged-chr17-32404970-2	chr17	32404470	32405470	+	998.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029458)	TTS (NR_029458)	-1388.0	NR_153797	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	2.60539414246628	2.35903401219822	2.71658336360793	2.52953360864034	2.35757615658055	2.66977369358239	-0.257983195431919	0.753997317950239	1
Merged-chr16-59583753-4	chr16	59583249	59584249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-27997.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	4.11682041836937	4.13666836963242	4.31581383304214	4.11451236346131	4.47553679389025	5.05229643480136	1.03773897010703	0.045217629756228	0.268364374946949
Merged-chr12-12268283-3	chr12	12267766	12268766	+	727.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	6127.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.82803800855828	5.77253330434785	5.99939844202996	5.64171641362617	5.59320515131899	5.64709111631639	-0.43191905463322	0.163850814834818	0.537798828885102
Merged-chr2-167762762-2	chr2	167762262	167763262	+	919.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71585.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.85086564455548	6.62918914733778	6.85137990885641	6.62060215632631	6.55408768985022	6.58202053959688	-0.304242059580665	0.238583410091325	0.635336330131045
Merged-chr8-117541970-2	chr8	117541470	117542470	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	43695.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.43703855328962	2.33072435157363	2.64765879239138	2.41324260815374	2.325211575569	2.60054089076375	-0.164100122335687	0.84255522680629	1
Merged-chr4-59465651-4	chr4	59465137	59466137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27004.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.19760131489798	6.28880033484042	6.20341763431905	6.02451434288763	5.95625180483538	5.95339970652323	-0.434814322014118	0.123775409032421	0.470898704816255
Merged-chr16-36673374-4	chr16	36672872	36673872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7295.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.99095856256662	6.02204926016053	5.82812923831526	5.89155427591329	6.3015453849841	5.78421999777125	0.127484867838712	0.693445324073257	0.918953933419669
Merged-chr7-123377930-4	chr7	123377422	123378422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025304)	promoter-TSS (NM_025304)	-60.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	5.43195845553721	5.66640930085845	5.74175757872949	5.55334647998362	5.56406749644604	5.85099695308274	0.0737000835761097	0.824334792816012	0.958538023027357
Merged-chr11-68955119-2	chr11	68954619	68955619	+	742.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177566, intron 1 of 15)	intron (NM_177566, intron 1 of 15)	1739.0	NM_177566	442801.0	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	2.40607025392451	2.23212387188454	2.56435007403207	2.11302526760597	2.12856434752173	2.32826450884294	-1.51184900058375	0.0976555979633668	1
Merged-chr12-4158360-3	chr12	4157849	4158849	+	847.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	24196.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.22184379722276	4.31218294684777	4.71186171497734	4.09371027882992	3.7689916639399	4.18909294419048	-1.1209934248546	0.0291004145130589	0.204837770984063
Merged-chr6-31168838-2	chr6	31168338	31169338	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	49636.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.17236707741695	3.89345092962504	3.9915244488612	4.24210535122082	4.25587305795951	4.06166799950812	0.480733344524523	0.325329114857464	0.718104679754736
Merged-chr13-63258374-4	chr13	63257864	63258864	+	939.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18335.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.89237984341667	5.10829048904455	4.73913923583327	4.9740682233978	4.7452245051544	4.92213352359845	-0.118136139853578	0.766177083502721	0.942366894267556
Merged-chr4-133806018-4	chr4	133805526	133806526	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-52415.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.21439451238505	7.38258495154163	7.0212603136577	7.45960140361459	7.32823414642754	6.85584761742477	0.0423366065979441	0.879057166756166	0.972074795996392
Merged-chr6-116631173-4	chr6	116630656	116631656	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2157.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	4.21762418117891	3.5262328147684	4.1395869469496	4.13348822391396	3.72351247428032	4.11770311754792	0.0155350635825069	0.978924081037539	0.995160277495735
Merged-chr2-120731545-4	chr2	120731067	120732067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026891)	promoter-TSS (NM_026891)	-50.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	6.40641888001353	6.34490892695783	6.61429720022221	6.38265692370773	6.1245243308551	6.3813591922051	-0.260596973196011	0.356384650886331	0.743237008563263
Merged-chr18-46287394-2	chr18	46286894	46287894	+	716.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160399, exon 7 of 10)	exon (NM_001160399, exon 7 of 10)	-6544.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	3.92157780609957	3.77980756498304	3.83595311275043	3.97612916545341	3.89364625543768	3.90572001278948	0.242878134561889	0.632044587595561	0.895435008062156
Merged-chr13-43557275-3	chr13	43556755	43557755	+	924.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 1 of 8)	intron (NM_001081059, intron 1 of 8)	2936.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	3.95367251070123	3.50790173319758	4.09337794401595	3.66527317630242	3.81743336691421	3.73328549274471	-0.405049011659732	0.479485992931379	0.82426854740066
Merged-chr16-43979831-6	chr16	43979292	43980292	+	955.634277	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007460)	promoter-TSS (NM_001007460)	-742.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	4.41020268103635	4.47497822316167	4.45816377134262	4.26551389774186	4.23308134400692	4.11402575618578	-0.629655287066753	0.161463576322768	0.53443101390926
Merged-chr3-69117302-3	chr3	69116771	69117771	+	622.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	9821.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	4.50510371005111	4.70538552681299	4.8479080868393	4.79511106613545	4.76401684808252	4.60276279032018	0.099759567960754	0.809076942627199	0.954721853010197
Merged-chr9-106368521-4	chr9	106367997	106368997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-135.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	7.18410426943252	7.50290242012668	7.4416467800326	7.51742182486657	7.43524301862486	7.37134145668455	0.0911868084629653	0.701887359484302	0.921613435505283
Merged-chr9-65587089-4	chr9	65586586	65587586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-74.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	2.89409627675248	2.90838807830918	2.74353806639702	3.10976766021912	3.01689284061347	3.00932598292423	0.90804712859418	0.194338386447019	0.581589284257071
Merged-chr4-108454827-4	chr4	108454316	108455316	+	900.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4610.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	5.95122902189145	6.01670542407295	5.71585181080064	6.11314745682141	6.37285176194848	5.93785131354835	0.43997200680869	0.160684204041528	0.533400273274054
Merged-chr10-53616454-1	chr10	53615954	53616954	+	900.0	f0_balb.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	13985.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	6.72077543692638	6.82753625879507	6.65681007955101	6.91828550979862	7.03584930158394	6.40011810011525	0.135885378657549	0.639137364882903	0.897935351850988
Merged-chr7-110266025-4	chr7	110265525	110266525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 5 of 11)	intron (NM_009302, intron 5 of 11)	44322.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.01928076080373	3.87674661215391	3.99062471371995	3.95239807124553	3.68043099828219	3.86261656864815	-0.40827294087027	0.429795010607797	0.795863007201232
Merged-chr3-27186301-3	chr3	27185809	27186809	+	611.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	3305.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.84720823614712	4.28650375280032	3.95000519469984	4.08349035059	4.02929733923812	4.06941054775931	0.0299931064332061	0.95310950163217	0.989359300570295
Merged-chr8-24427722-4	chr8	24427216	24428216	+	968.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11230.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.7412264575447	4.99361480840765	4.82466525214453	5.07295785034855	4.87503287660373	4.55443012580968	9.28752296859043e-06	0.999982155175041	0.999986582743456
Merged-chr1-181257074-5	chr1	181256586	181257586	+	971.914307	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45108.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.78191025077525	7.10507745267864	7.30564554094036	6.8865088967937	6.98803898841413	7.0214497106046	-0.166628293208377	0.532506575312448	0.851971173271146
Merged-chr15-103316125-2	chr15	103315625	103316625	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-5687.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	2.94678924231743	2.7980535548645	3.21167791779881	2.99928522169407	3.01335747616201	3.4371165818121	0.742435380592912	0.298593968949573	0.695358464905173
Merged-chr5-62750573-3	chr5	62750071	62751071	+	886.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	MTA_Mm|LTR|ERVL-MaLR	15606.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.89158022411677	3.52834060277845	3.47004387172797	3.78447818402301	3.47943581134052	4.05062869965566	0.451182546194995	0.458312792854248	0.812961658694989
Merged-chr7-25720093-4	chr7	25719595	25720595	+	739.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.77335059909504	5.83205236628112	5.90902818407626	6.01655237917779	6.24159262874183	6.12787026611509	0.523815706100457	0.0748577831751114	0.360171937408491
Merged-chr12-38781035-4	chr12	38780464	38781464	+	859.0729369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007960, exon 2 of 13)	exon (NM_007960, exon 2 of 13)	882.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.93037724318884	7.00523817732777	6.90117822990968	6.88066182783638	7.12479413829947	7.1440891982131	0.161960838480157	0.511897412670254	0.841619835183182
Merged-chr7-4500464-3	chr7	4500019	4501019	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	1161.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.71759583117872	6.68396493814176	6.49149743424348	7.06123298801597	7.01654237432599	6.75923275567889	0.492880766650641	0.058926788835225	0.314201316162123
Merged-chr2-45232495-3	chr2	45231998	45232998	+	611.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115056.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.15944905201675	7.34624374311037	7.27129430561569	7.21619432188822	7.42713731077952	6.90823025278017	-0.0709129533768628	0.78576479255683	0.948164689606319
Merged-chr1-87624459-2	chr1	87623959	87624959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	4147.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.67026291454194	6.63076098903723	6.7311111086016	6.77336854662407	7.12406079147288	7.03108633864002	0.484807834114835	0.0604774727625508	0.318514434687406
Merged-chr15-103309866-2	chr15	103309366	103310366	+	970.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030720, intron 1 of 1)	intron (NM_030720, intron 1 of 1)	572.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	4.81595491659997	4.40148325391396	5.11559009059777	4.78168956860883	4.35568905792908	4.85385802911622	-0.292970412131993	0.535190419123433	0.85341621121369
Merged-chr10-13199413-3	chr10	13198864	13199864	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-6227.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	2.35539926828351	2.47419320554656	2.27625601173869	2.41353404246014	2.34215946233582	2.54497136408067	0.36534611823995	0.661057758419787	1
Merged-chr9-65677277-2	chr9	65676777	65677777	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	729.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.91750380014037	3.86663727811101	4.09250002595809	3.82597597543301	3.96521117182897	3.82242220920184	-0.238370180405131	0.641333925795458	0.8989154097126
Merged-chr18-74778966-7	chr18	74778480	74779480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028560)	promoter-TSS (NR_028560)	-232.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	6.76531982119084	6.70265189129345	7.02856306124734	6.74278793265678	6.64225483689666	6.5700883339265	-0.274632202537068	0.296709929236267	0.693338846636842
Merged-chr4-40978052-3	chr4	40977551	40978551	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 2 of 15)	intron (NM_001290448, intron 2 of 15)	7108.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	3.35661010430459	3.5112418135248	3.33245835490461	3.39374523673527	3.30148130936561	3.28784629221024	-0.302062488749087	0.615926338116126	0.88813792118476
Merged-chr16-91866016-4	chr16	91865466	91866466	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	65664.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.64288541621207	5.50099950345669	5.91014350671588	5.48267531131393	5.56995639649288	5.78539475114851	-0.134952420994815	0.687587149210304	0.917193226920892
Merged-chr16-38377937-2	chr16	38377437	38378437	+	581.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081984, exon 4 of 4)	3' UTR (NM_001081984, exon 4 of 4)	15747.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	2.56343442099675	2.39156707230826	2.76075609676555	2.42340504419817	2.57686900623131	2.4639782852305	-0.487535723710932	0.551034861544704	1
Merged-chr17-33909364-4	chr17	33908889	33909889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	-56.0	NR_149750	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	8.38851735795276	8.51308252207776	8.33810240983447	8.19331526111403	8.43615616770378	8.13519098100498	-0.20955768482119	0.335453378994701	0.725581760882556
Merged-chr12-17715873-4	chr12	17715352	17716352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	25043.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.01197157446292	5.73294689200527	6.60638380650324	6.39130182449072	6.39438549323132	6.53864265694625	0.467684524334148	0.173364269995938	0.552164370442947
Merged-chr4-145229307-4	chr4	145228817	145229817	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	17553.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.74506315383909	5.70606458680558	6.12807310697377	5.7192886971138	5.61212856992402	5.45135421632046	-0.469519121054194	0.159866765241978	0.532321973758633
Merged-chr14-32164878-2	chr14	32164378	32165378	+	807.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284319)	promoter-TSS (NM_001284319)	-708.0	NM_001284319	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.43926947225123	6.51086971109072	6.57367754911088	6.78950683295428	7.00043001428976	6.24124291352333	0.354728248331296	0.248031461505773	0.645132606072547
Merged-chr14-101608828-4	chr14	101608308	101609308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081278, exon 1 of 19)	5' UTR (NM_001081278, exon 1 of 19)	383.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.53731708705866	4.67065088410011	4.56255806661605	4.83438369789995	4.56627698567411	4.5002632524779	0.121354787151706	0.773781534250547	0.944183453856367
Merged-chr6-17611828-4	chr6	17611317	17612317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-25193.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.33155949079159	6.57001961282731	6.49628599082324	6.71601236513982	6.87855029771539	6.70769628053758	0.484915562163355	0.0658235128983617	0.334823502949436
Merged-chr10-41968371-4	chr10	41967860	41968860	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 8 of 17)	intron (NM_001034858, intron 8 of 17)	50022.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.93089133829593	4.89335022504073	5.21849418743719	4.75219708432254	5.03885247530197	5.18986191712219	-0.0228119608733526	0.953979408318722	0.989495550016789
Merged-chr17-34122644-4	chr17	34122110	34123110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	-3.0	NM_001204973	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	9.27710610623334	9.11376619511353	8.68473474937701	8.99763786120607	9.17345551891242	8.79276674797354	-0.0726380092506048	0.767997406370597	0.942754893315356
Merged-chr7-97788615-8	chr7	97788113	97789113	+	921.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357364)	promoter-TSS (NM_001357364)	72.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	6.27483179675985	6.11933550812699	5.63589500423254	6.20919946223895	6.05122784448666	5.92082981701598	0.0293696589974094	0.92918291165918	0.983987942057929
Merged-chr4-32562440-2	chr4	32561940	32562940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 3 of 5)	exon (NM_001109661, exon 3 of 5)	9222.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.25516982029752	6.5860874907093	6.66646727735445	6.12592797205254	5.80750534220015	6.46880821353296	-0.597552188176301	0.0664294976006832	0.336712087984749
Merged-chr11-4521102-4	chr11	4520601	4521601	+	852.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	73714.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.62952309242629	4.29322944097565	4.48927626699231	4.12857996803075	4.31016118477386	4.38846141671864	-0.526094269941553	0.252030485294866	0.649617120850337
Merged-chr7-81199958-4	chr7	81199454	81200454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13850.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.77272993048655	6.7686688619838	6.71712995375216	6.7312765441321	6.79051224923926	6.48179784517594	-0.109654503455775	0.672837564243121	0.910966428144718
Merged-chr10-8358395-4	chr10	8357888	8358888	+	982.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	160437.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.96167533471878	4.12831964854624	4.00496687430674	3.97734166804313	3.90036202105213	3.92523963904392	-0.307320454250162	0.53450848880278	0.853068627162717
Merged-chr15-93917826-2	chr15	93917326	93918326	+	828.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	9285.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	3.33004658629635	3.56547284332138	3.40771649039303	3.72551408168121	3.69190663736342	3.47983883443406	0.728748303560648	0.213252349716564	0.606083325313929
Merged-chr5-90882376-4	chr5	90881875	90882875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8870.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	7.12358901812788	6.76944161756694	6.19633241378096	5.7242421645815	5.12306978898477	5.54824521890021	-2.18448696324495	5.81078441116903e-09	5.55751435959256e-07
Merged-chr6-4948158-1	chr6	4947658	4948658	+	719.666687	f0_balb.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	44838.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.12060249352069	4.40997461879559	4.05382661893139	3.52861985371887	3.41244350349104	3.59592447629844	-2.38562887144126	2.97463636014863e-05	0.00102097133579175
Merged-chr1-84864878-4	chr1	84864382	84865382	+	971.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	25041.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	4.24850933771386	4.1892729703267	4.56941385614015	4.41574209701768	4.18767311396	4.63451809171952	0.203760927430534	0.667215792065908	0.908636524160721
Merged-chr2-116923412-3	chr2	116922908	116923908	+	919.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23256.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.69398059381159	3.26946533685921	3.61392331136407	3.24163926292146	3.00791315864477	3.12503343771477	-1.69652102180204	0.0109638974227657	0.107195869136018
Merged-chr8-116944450-5	chr8	116943903	116944903	+	835.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	1010.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	6.5433662095475	6.7575024614008	6.57224283926991	6.58101445848195	6.49649186662525	6.33392974402877	-0.243356665873078	0.365212491099363	0.750391410706862
Merged-chr15-86173874-3	chr15	86173378	86174378	+	829.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	L1MDa|LINE|L1	-11850.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	5.18435032376581	4.94891267735361	4.94868455981287	5.05883417773558	4.99302273960649	5.18564323486128	0.0804671944362061	0.829145734817343	0.959990063227229
Merged-chr7-126198376-2	chr7	126197876	126198876	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	L1MB2|LINE|L1	2125.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	2.66450117509863	2.61986018901886	2.77683616900031	2.63856145538095	2.45466656985439	2.53799126970293	-0.817020197811369	0.292139142846271	1
Merged-chr17-74804028-3	chr17	74803531	74804531	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	MER20|DNA|hAT-Charlie	86281.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.60902166732383	3.36632575691972	3.65314381292965	4.60594423495721	4.73765157917464	4.35469251165446	3.34631432110771	8.04984564818354e-09	7.47136958410847e-07
Merged-chr14-33857171-4	chr14	33856637	33857637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-45854.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	3.5880816395801	3.66523558068079	3.52562811895982	3.84631002387495	3.6950878188727	3.3579738071528	0.200366432264047	0.734129659440752	0.932325051544019
Merged-chr13-81125346-4	chr13	81124848	81125848	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	161274.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.47246378031909	4.43223594993596	4.24938552957495	4.20679437708806	4.2041332633444	4.44943911145433	-0.294232854642464	0.517917891742529	0.844849793679631
Merged-chr15-67300723-4	chr15	67300190	67301190	+	908.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 5 of 8)	L1M4|LINE|L1	73921.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.87343512612908	4.82349905030394	4.66010574525511	4.44958845034306	4.32095808118012	4.33314784114619	-1.0455240547942	0.0135110872745111	0.123759532542648
Merged-chr14-73245010-2	chr14	73244510	73245510	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	7119.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	5.49902203296355	5.38401721887336	5.46651015668203	5.46730125542384	5.80485176410217	5.82075857823072	0.48403257344596	0.144800843336862	0.507645438049158
Merged-chr12-69987163-4	chr12	69986656	69987656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022028)	promoter-TSS (NM_022028)	-154.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	6.9911300064345	6.63902810241643	6.87567661537798	6.90454648002547	6.39645455980621	6.65949353069537	-0.275076007130961	0.339759641053108	0.729397455488285
Merged-chr17-23980706-4	chr17	23980203	23981203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-5473.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	6.54468689135753	6.33471168962345	6.5188882058054	6.88737782265788	7.03857706239917	6.71411534597241	0.676374397366171	0.0109263522419571	0.106934829140058
Merged-chr9-57552616-2	chr9	57552116	57553116	+	856.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_151692, intron 1 of 7)	CpG	136.0	NR_151692	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	4.61690348148691	5.09041454981931	4.92797309351619	4.9118217751252	4.9915757598193	5.19286238355583	0.295826472882418	0.463808773259665	0.816038286358001
Merged-chr10-86778786-7	chr10	86778285	86779285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175331)	promoter-TSS (NM_175331)	-220.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	8.08415451759538	7.8524591472514	7.83914619608654	8.19293445694206	7.97569406104403	7.65296091016058	0.0467749171096644	0.850325370165729	0.964858782843783
Merged-chr13-113548139-4	chr13	113547628	113548628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45284.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.92820313904779	5.98457703294493	5.37623013856465	5.79114095662313	5.86199775147853	5.30129861591064	-0.208866213415727	0.578855678509637	0.872437129840066
Merged-chr9-88953357-4	chr9	88952858	88953858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3562.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	5.72056775210795	5.28488166623083	5.50880497565533	5.22291476622719	4.9937333671832	5.24021203166394	-0.733008721460818	0.0442243093739318	0.264706087729809
Merged-chr7-31105336-4	chr7	31104880	31105880	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	5617.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	3.62373189496979	3.46534470478734	3.61340898533974	4.26444468520171	3.88729450301811	4.57975353741014	2.18296869916126	0.000155425397738066	0.00409028684435915
Merged-chr9-35199348-4	chr9	35198895	35199895	+	961.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177845, intron 1 of 6)	intron (NM_001177845, intron 1 of 6)	510.0	NM_001177847	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	6.78352788195326	6.92370339885377	6.98813693487177	6.81615127330822	7.05355895804646	6.63825216389038	-0.0593303621025757	0.8231447005582	0.958214218900685
Merged-chr9-65547922-4	chr9	65547420	65548420	+	840.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32167.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.04541710745831	5.88104607164118	5.99033281133169	6.11625531323194	6.1064678968102	6.20251594064355	0.285875206518958	0.319511118433391	0.713488854059233
Merged-chr9-44083975-3	chr9	44083467	44084467	+	879.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-953.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	5.14716147636748	4.89528311476137	4.9752365148882	4.97991758272273	5.14086100410818	5.07536966492946	0.123200508535351	0.741175584278779	0.934760185774655
Merged-chr7-28179412-4	chr7	28178914	28179914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010092)	promoter-TSS (NM_010092)	-69.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	5.30612463166752	5.46614626935118	5.44504556343077	5.31183600488564	5.42254175293311	5.5633094804922	0.0490919022452772	0.88422622993048	0.973466734537782
Merged-chr15-36323918-4	chr15	36323395	36324395	+	835.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40748.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	2.96698972683235	2.54069981817106	2.85036188395986	2.76406312741627	2.56866812126065	2.92339417066077	-0.213496954237133	0.785665942595268	0.948159362874442
Merged-chr17-50471419-4	chr17	50470917	50471917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38130.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.96008058911979	7.00735223217949	6.80453289356349	7.12586876807134	7.00113284984876	7.21123810164273	0.269339468693605	0.273180011107695	0.670444855009706
Merged-chr13-41000291-5	chr13	40999755	41000755	+	864.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026550)	promoter-TSS (NM_026550)	-755.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	6.58677993245674	7.03533482084159	7.09485829910877	6.6419472463475	6.857120381418	6.92050491384547	-0.170741701361549	0.544782628376811	0.857894224757806
Merged-chr1-171281259-4	chr1	171280774	171281774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-88.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	7.21547490375084	7.35008863145887	7.0575659855275	7.08670832884326	7.35528870471029	7.12854951488385	-0.0264592483880949	0.915307075987454	0.980959026698783
Merged-chr7-140943380-2	chr7	140942880	140943880	+	715.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_145387, exon 4 of 14)	exon (NM_145387, exon 4 of 14)	1989.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	3.5264117981648	3.57366730923603	3.81890090337832	3.68165755078641	3.21904592815334	4.10744000497036	0.246969629948813	0.704283061323415	0.9223772679418
Merged-chr6-97342621-2	chr6	97342121	97343121	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	ID_B1|SINE|B4	-89841.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.69373454379448	3.91025636150073	4.27007452326654	3.59243839664244	3.47166793634544	3.95663736191417	-0.930782858468203	0.113770476160522	0.450576572125877
Merged-chr16-91646372-2	chr16	91645872	91646872	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	intron (NM_010256, intron 1 of 21)	600.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	6.616494486936	6.37677130271363	6.4468062199225	6.60905388381606	6.79934104874283	6.39142719391748	0.218901795416145	0.434102227528992	0.798161046254167
Merged-chr10-127607694-2	chr10	127607194	127608194	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 4 of 88)	PB1D7|SINE|Alu	13454.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.03414884719045	5.6328424480292	6.3394877206582	5.5517021314119	5.35024830391165	5.91004952251465	-0.739099357437469	0.0463660103126439	0.272497738811589
Merged-chr7-25776925-4	chr7	25776447	25777447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 6 of 19)	intron (NM_009465, intron 6 of 19)	11786.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	5.05767103838301	4.65687653155955	5.43577882603543	5.32525126403565	5.047847676151	5.03718529282634	0.137907973579458	0.744800132195582	0.936032341688524
Merged-chr18-37956365-4	chr18	37955792	37956792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153793, intron 1 of 7)	intron (NM_153793, intron 1 of 7)	733.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	4.18260717997363	3.78002797487181	3.92662513540146	4.14198306293409	4.38205673139687	4.09839770141638	0.694342780147816	0.174328678913842	0.553477591386713
Merged-chr5-105567106-4	chr5	105566593	105567593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47622.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.98237877617595	6.82395780253469	6.61422989182372	6.94168074989695	6.86526215606428	6.44986107776405	-0.0663737758216722	0.815099426208561	0.956370078970016
Merged-chr16-42907553-4	chr16	42907061	42908061	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285805)	promoter-TSS (NM_001285805)	-84.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	6.00906267019014	6.13420386938982	5.84230075463077	6.49231882143588	6.14086600045209	6.05335981460511	0.402853769508078	0.192234447880053	0.579230271200559
Merged-chr16-11014017-2	chr16	11013517	11014517	+	769.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5119.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	4.82520275538509	5.07138987169314	4.7406195610573	4.91927358086996	5.11815961906479	5.13687889002524	0.3557005096973	0.360263456234119	0.746490068140763
Merged-chr7-80011683-4	chr7	80011163	80012163	+	954.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13151.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.39782770691809	4.21052772349572	4.44774053355042	4.4956451232794	4.24115799810159	4.43051030094521	0.0971177553445391	0.829620913921188	0.960125413857885
Merged-chr8-70874484-2	chr8	70873984	70874984	+	781.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-994.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	2.79874948970978	2.75628431269688	2.99186765976463	2.84480903656492	2.76277206753851	3.06338612572898	0.209208426718519	0.770030908995237	0.943310056383255
Merged-chr19-41340454-2	chr19	41339954	41340954	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	(CAAT)n|Simple_repeat|Simple_repeat	44616.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.4688479112324	7.56822294230274	7.26293503573459	7.67684716812182	7.60673046766984	7.18273624967943	0.102293432798273	0.692045475835852	0.918541547639936
Merged-chr15-81960276-4	chr15	81959737	81960737	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282041, intron 1 of 5)	intron (NM_001282041, intron 1 of 5)	693.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	4.76747060729971	5.25210508132521	4.90435142675465	5.16048377165188	5.12338707878115	5.04396012567789	0.238001689971624	0.544037721258507	0.857551302506722
Merged-chr16-33900828-2	chr16	33900328	33901328	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	66210.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.9679322020373	3.71782703309944	4.12548762341865	4.05835763265944	3.58734446435743	4.2770960977432	0.165757738698394	0.771784218042137	0.943614978016208
Merged-chr15-79741386-4	chr15	79740888	79741888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194342, intron 1 of 16)	intron (NM_194342, intron 1 of 16)	1148.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	7.48985961922089	7.43894086721421	6.85553492496286	6.85074148626904	7.20124249153523	6.60679985794375	-0.57037176953337	0.0652612001105114	0.333024389037881
Merged-chr1-87626553-4	chr1	87626050	87627050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	6238.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	8.13646105655253	8.19632383847912	7.76378698483304	7.83117333938236	8.27538329689134	7.8885880452206	-0.0445595085555169	0.861750778795808	0.967996224966109
Merged-chr12-79812994-4	chr12	79812473	79813473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	111760.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.82228889894925	5.72987017018644	5.52365595104217	6.03557092093355	6.14166893212422	5.58790295033253	0.447083822185468	0.184371410274727	0.568008869150839
Merged-chr12-40555246-4	chr12	40554758	40555758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	109205.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.85183730058838	7.29107600908857	7.15883560768677	7.05892941730936	7.50058614259471	7.12926859872872	0.208087730520366	0.451656635011951	0.809233899859178
Merged-chr2-61599992-2	chr2	61599492	61600492	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	6895.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	3.22436653143566	3.28685015603263	3.31970519124004	3.30244022605978	3.35540968439426	3.60138557823965	0.564452135261091	0.353446731374493	0.740735826287885
Merged-chr9-90043792-2	chr9	90043292	90044292	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-10475.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.98912344094497	5.90368588553552	5.70863896334116	6.47644026078284	6.74056514938641	6.3422216754279	1.10158820958701	0.000240762731751228	0.00581351868356244
Merged-chr7-81308397-2	chr7	81307897	81308897	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 9 of 21)	B1_Mus1|SINE|Alu	36837.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	5.38648863816442	5.38559014238202	5.01009846383938	5.27604677557013	5.25364757490193	5.03859610072741	-0.168638038346641	0.647555730625915	0.901492962680207
Merged-chr4-141951598-2	chr4	141951098	141952098	+	623.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_177868, exon 13 of 32)	exon (NM_177868, exon 13 of 32)	-31394.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	6.45513606859487	6.10380479332115	6.20500997771886	6.1745314138235	5.9839904295485	6.26517082653918	-0.215502780820241	0.468805650332367	0.81871260027821
Merged-chr11-114883430-2	chr11	114882930	114883930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6611.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.24008917450058	7.01927265637034	6.77011457311177	6.49199252193733	6.93023534583395	6.87433083547552	-0.383471369372295	0.177920559648931	0.55892688546374
Merged-chr14-9389427-4	chr14	9388934	9389934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-494661.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.80103826798624	5.70914067909277	5.69993170692493	5.74959596876426	5.87534283075546	5.70841148534882	0.0848377986987137	0.782563183926191	0.946600874757591
Merged-chr14-47189403-4	chr14	47188906	47189906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008102)	promoter-TSS (NM_008102)	7.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	7.96390007496731	8.11404763909526	7.75802901051392	7.70444615305972	7.86792997945428	7.761923913433	-0.253816007002473	0.265859358684259	0.663674403642054
Merged-chr2-129309216-4	chr2	129308711	129309711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 1 of 6)	intron (NM_010554, intron 1 of 6)	761.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	8.15936566666001	8.30039109792116	8.06005545370011	8.32713722457244	8.61430076685489	7.88692498142889	0.196603221914685	0.453280676982032	0.809745581877009
Merged-chr17-83705030-1	chr17	83704530	83705530	+	544.0	f1_balb.idr	Intergenic	PB1D7|SINE|Alu	-1133.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.25741626245488	5.41706585788932	5.3073712925281	5.49530344239094	5.73419705178838	5.85926758746475	0.701585598567458	0.0372247371321129	0.23808244378445
Merged-chr17-88058095-4	chr17	88057599	88058599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	PB1D9|SINE|Alu	6833.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	5.18378474690993	5.63251487089639	5.53997961426593	5.66236662106983	5.94013149427226	5.65850507625354	0.562783804773247	0.105063410714205	0.432414120725505
Merged-chr2-59976565-4	chr2	59976037	59977037	+	856.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93931.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	6.81652939969384	7.14824641942189	6.521862613549	6.90597814908524	7.2556884386689	6.26597659705255	0.0362667307509827	0.918292861738932	0.981747877135909
Merged-chr1-165736281-4	chr1	165735761	165736761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27497.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.20207272101963	6.0805877188837	6.2369144476934	6.14033694891677	6.31147879263298	6.10722287609628	0.0444713795777148	0.875562696761319	0.971054644903929
Merged-chr17-30007076-3	chr17	30006579	30007579	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	2040.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	5.37857977692634	5.29279213078077	5.29546679330336	5.57716723461167	5.52519543133523	5.48191195112948	0.399620884196415	0.225516842908295	0.620447211503552
Merged-chr16-84735309-4	chr16	84734781	84735781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	21.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	4.84471520923959	4.76702453728135	5.12813892777608	5.41067677502065	5.32206909526804	5.25695796483492	0.887888708143103	0.016107419351803	0.139494811555456
Merged-chr16-35765097-3	chr16	35764607	35765607	+	996.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	6.19991756067331	5.6303142756874	6.1473927551797	5.8848540895788	5.47310503049248	5.75237207541017	-0.540872087218272	0.123087869989486	0.469375521223989
Merged-chr7-98308901-2	chr7	98308401	98309401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	641.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	7.71203698692082	7.59067952242027	7.43992348356212	7.40515057127767	7.48233354179933	7.51746445956117	-0.179613630216175	0.431593870656918	0.796971674333736
Merged-chr2-116976549-2	chr2	116976049	116977049	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76397.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.3479803944859	7.18918970957389	7.36472740200185	7.4574413047563	7.7245505435046	7.48494611996767	0.392744974836836	0.0964728829420258	0.414036586321995
Merged-chr13-98809234-3	chr13	98808737	98809737	+	832.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	B2_Mm2|SINE|B2	6212.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.34760525169432	5.32915723134679	5.22197250904224	5.79054456375197	5.79877173412166	5.38797373654772	0.721266860676796	0.0355064449393874	0.23132009634486
Merged-chr7-19878726-2	chr7	19878226	19879226	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177036, intron 6 of 6)	intron (NM_177036, intron 6 of 6)	9239.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	2.64785045806775	2.54253934273517	2.70145760695032	2.52751121605353	2.49613031944801	2.65215901844415	-0.423252531171406	0.581367084960129	1
Merged-chr7-26251505-2	chr7	26251005	26252005	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-15326.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	3.77286293026304	4.24527799150078	4.40990819597888	3.85958833312471	3.90410105002699	3.95364257058872	-0.758809905039563	0.157372201346559	0.528623968470245
Merged-chr19-55901822-3	chr19	55901318	55902318	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	6497.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.65753348158298	2.64797426118103	2.94794346864656	2.60475713019235	2.54142935825445	2.73273731882779	-0.716704474441275	0.349995833937239	0.738099486776403
Merged-chr7-118490074-2	chr7	118489574	118490574	+	564.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1901.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	4.99154276435887	5.05489606255546	5.29404775704011	5.553265615309	5.57934556023167	5.35783524620101	0.795044528085498	0.0233342861234946	0.178850338961288
Merged-chr4-97753144-2	chr4	97752644	97753644	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-24482.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.43511015428951	5.55776258076027	5.6593932949288	5.67895888491864	5.63497566479808	6.0868148385981	0.470002675792536	0.162295611976025	0.53575709280731
Merged-chr3-79229563-4	chr3	79229071	79230071	+	952.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	16652.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.30598431720823	4.27280324347952	3.95057943820412	5.10189300329887	5.35166078447961	4.99695417675447	2.29810139369493	1.08367220066352e-06	5.79499977331683e-05
Merged-chr2-150789539-1	chr2	150789039	150790039	+	1000.0	f0_balb.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2743.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	4.06551642812857	3.96635880853707	4.16031473673028	4.0369040777809	3.93627679026284	4.26992249170287	0.0496929774587996	0.919750615805635	0.982080783809915
Merged-chr10-44631773-4	chr10	44631269	44632269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173021.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.82550370362287	7.99882916392075	7.74881321472676	7.71488746073048	7.93697937327941	7.61202377278653	-0.1391822391233	0.550188549602456	0.860631826326949
Merged-chr18-42513401-4	chr18	42512907	42513907	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360881, intron 1 of 20)	intron (NM_001360881, intron 1 of 20)	1920.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	4.71350035149191	4.65801838552571	4.58847358100429	5.45025359856836	5.2630145443731	4.98666082582927	1.29263286987417	0.0010309247100075	0.0184515343665958
Merged-chr13-34282261-3	chr13	34281759	34282759	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	62923.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.34508719697101	4.29606527895754	4.25983580796052	4.10511480871016	4.3200440711485	4.37145095153232	-0.0895078559773048	0.844720134567992	0.96373428957366
Merged-chr10-19064321-2	chr10	19063821	19064821	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48911.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.79902035142049	6.50521797881497	6.21943629604185	6.86382614094248	6.8396766604602	6.5618154950909	0.357367265489713	0.225716400854752	0.620677573839554
Merged-chr19-43709851-4	chr19	43709338	43710338	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	20149.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	5.10285625735532	5.04668072871698	4.96266711655486	5.81866226934013	5.6287004587669	5.58716868144532	1.25515631670922	0.000271283513604069	0.0064145946575639
Merged-chr17-78916543-4	chr17	78916042	78917042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	43.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	6.33794704013039	6.39232581401064	6.40869668622976	6.64315846184149	6.45542610390162	6.44976546562271	0.229419014604989	0.389334225899248	0.769015431167891
Merged-chr1-92667298-2	chr1	92666798	92667798	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18457.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.68671820318285	5.63945799413454	5.82858993466071	5.71890724547277	5.5481394462254	5.29161797965025	-0.324575297061524	0.331320005729685	0.722668404140379
Merged-chr2-52420162-3	chr2	52419646	52420646	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	4728.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.31514999856925	3.23203040339175	3.49586765465388	3.40527418723152	3.47667662570633	3.66707117023333	0.647267773819304	0.279089442926058	0.67658480298895
Merged-chr5-53880931-2	chr5	53880443	53881443	+	733.0	f0_balb.idr|f1_balb.idr	intron (NM_144517, intron 15 of 20)	intron (NM_144517, intron 15 of 20)	71316.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	3.58584912154144	3.87323930135348	3.5167312298846	3.09928189477461	2.95525549004644	3.30517736065424	-2.37337922276252	0.000531867176402123	0.011014336489315
Merged-chr17-17374179-4	chr17	17373661	17374661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-171.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	7.16091818644091	7.98111011403605	7.68467767545602	7.41436534807265	7.91051304816465	7.17487726815117	-0.158296305665163	0.626154252852636	0.892819497179456
Merged-chr4-93335497-4	chr4	93335004	93336004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026954)	promoter-TSS (NM_026954)	7.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	6.20517558630328	6.33655384534544	6.7204661790494	6.53986611383019	5.99783909771842	5.87176053114325	-0.424094065543486	0.215539206200796	0.608942899278685
Merged-chr11-94161442-4	chr11	94160952	94161952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50002.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	7.4482056010181	7.42057320783898	6.99895523183165	6.51566925931804	6.59128292513929	6.18040741232703	-1.32333185408124	3.91686775110873e-06	0.00017887745984317
Merged-chr7-80250410-3	chr7	80249913	80250913	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177765, intron 4 of 14)	intron (NM_177765, intron 4 of 14)	4037.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	2.38481745553751	2.4959286829571	2.5561465372173	2.16030772309134	2.06848068452911	2.44441772565066	-1.78927562964986	0.0598978637825292	1
Merged-chr9-82871598-4	chr9	82871111	82872111	+	859.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081216, exon 40 of 40)	exon (NM_001081216, exon 40 of 40)	41805.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	4.38467282301796	4.70807389106046	4.60637684619355	4.23277157554545	4.30838538019284	4.70941162182057	-0.376410763510635	0.41328952495369	0.784902566398158
Merged-chr3-30600374-3	chr3	30599870	30600870	+	724.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029690)	promoter-TSS (NM_029690)	-500.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	5.05282841717486	5.05096870092359	4.50571823543529	5.15260507983548	4.80473233298745	4.712391665537	0.00241908310075526	0.995596487584745	0.998961028701257
Merged-chr9-25175392-4	chr9	25174881	25175881	+	877.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23600.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	3.48093626005409	3.50458790640318	3.4333279191037	3.22136398514572	3.19865261020594	3.27861091246788	-0.980719694558777	0.105288956814702	0.433063940614814
Merged-chr15-83150970-2	chr15	83150425	83151425	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1280.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	3.85299307743034	3.42307091838963	3.68776327974846	3.4036548313641	3.15612201362031	3.7573257888395	-0.748441808690645	0.245454522176711	0.642580539934552
Merged-chr5-147527977-4	chr5	147527470	147528470	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 11 of 18)	intron (NM_028291, intron 11 of 18)	97814.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.12849967246651	3.96312684935596	4.13249770752827	3.86748060712346	3.94945077817627	4.15509871696432	-0.249936984756966	0.614401944109952	0.887435546271868
Merged-chr16-21652868-4	chr16	21652401	21653401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	41764.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.06508090420242	4.79429159270631	5.4607469382584	5.14898527441028	5.10526192249685	5.26738192866751	0.102511951110193	0.796763315224343	0.951517631310856
Merged-chr5-139484571-4	chr5	139484067	139485067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159908)	promoter-TSS (NM_001159908)	-76.0	NM_001159908	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	7.95254261798746	8.33824501026933	7.72292492064804	7.87463760388528	8.06964102533606	7.70524924697691	-0.199595084155574	0.448611158903298	0.807319620866959
Merged-chr6-39416802-2	chr6	39416302	39417302	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	B1_Mus1|SINE|Alu	2974.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	4.14818993059396	3.97856814298082	4.48309435118663	3.96883120214485	3.98950469240904	4.22558977371519	-0.423814859863399	0.402235631429835	0.77787096574423
Merged-chr7-43442673-3	chr7	43442174	43443174	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028849, intron 3 of 4)	Lx6|LINE|L1	-1398.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	4.77801284390949	4.47602365776148	4.92904372388444	4.65437147089351	4.71083221267985	5.12117423537161	0.233952370699458	0.589623453182785	0.876926167487679
Merged-chr5-123915306-2	chr5	123914806	123915806	+	941.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 3 of 7)	intron (NM_026603, intron 3 of 7)	8031.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.30919354122102	3.51258647133294	3.19352937287085	3.29532608098008	3.38830257590731	3.32604615553729	-0.0512806194660189	0.934064775729888	0.985705936387336
Merged-chr1-178329220-4	chr1	178328710	178329710	+	820.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016805, exon 14 of 14)	3' UTR (NM_016805, exon 14 of 14)	8605.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	5.05251825412087	4.96253121098922	5.15351288256131	4.77844762154756	5.08484717749185	5.27818254593842	0.00879281100088041	0.981874677482306	0.995853585616135
Merged-chr2-62635491-3	chr2	62634987	62635987	+	799.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027835, intron 2 of 15)	intron (NM_027835, intron 2 of 15)	10768.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	3.59280539353239	3.42434114074334	3.63342492730382	3.48757544555327	3.42472634774266	3.70270484907984	-0.0489682965722682	0.932285600448219	0.985087224393733
Merged-chr2-167921689-2	chr2	167921189	167922189	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10638.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.21564836298035	3.65834476819314	4.64637480017795	3.96336518149499	3.4373601921516	3.85185567300408	-1.35687514482342	0.0312889438223065	0.214155666493911
Merged-chr2-24315621-4	chr2	24315121	24316121	+	787.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-21239.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	2.92674705183982	3.25759496944532	3.27039205335205	2.65249913781819	2.70361523658559	2.88609018473296	-2.12508763188476	0.0058480681299903	0.0684974736712039
Merged-chr4-135494610-4	chr4	135494091	135495091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-13.0	NM_028995	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	6.94600594529427	6.79303369297474	6.41794195305577	6.8109235297577	6.77319327304002	6.76022468577717	0.0494511540806901	0.857409378978424	0.966747388099837
Merged-chr7-80947747-4	chr7	80947230	80948230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019951)	promoter-TSS (NM_019951)	-180.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	7.85042616766452	7.92231467733773	7.28638802285136	7.69349108374523	7.59811003619461	7.03383361100276	-0.351236773971882	0.244390762484808	0.641673237349277
Merged-chr5-147071237-1	chr5	147070737	147071737	+	721.666687	f0_balb.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	5335.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	4.52281562789877	3.78522310130948	3.99282453865971	3.45622943605546	3.29287044829588	3.91713321199959	-1.81711027526669	0.00483660140827693	0.0598197354096335
Merged-chr18-44828521-4	chr18	44828024	44829024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-141.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	8.45249767772775	8.69517159046015	8.24515437157699	8.47621037219967	8.44419206480302	8.27478670218046	-0.110418828540411	0.628270204496145	0.893577294752216
Merged-chr9-100570784-3	chr9	100570299	100571299	+	912.276184	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101483, intron 1 of 1)	CpG	286.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	5.00640535508903	4.82153098975303	4.19300761174046	4.47817205022832	4.14858170238182	4.21315292839898	-1.08736519530636	0.0308687543759258	0.212661642168574
Merged-chr15-96566986-4	chr15	96566447	96567447	+	915.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75015.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.63413676528596	5.65379695710096	5.58160578828129	5.62291077365155	5.50571816836658	5.77483257665622	0.00566431946022304	0.985874078799049	0.996977600359987
Merged-chr1-13336553-3	chr1	13336057	13337057	+	730.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	35872.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.24953058763787	3.9444131630439	3.99484068294674	3.90847067907469	4.10800861281791	4.01478167366259	-0.165952634021387	0.740956009161291	0.934712654423072
Merged-chr2-52937192-2	chr2	52936692	52937692	+	999.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	79324.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.88472563046249	6.06687838612911	6.02348610604243	6.09772629457556	5.97421082482226	5.84415977299578	-0.0212512144243973	0.943058682147416	0.987255473800966
Merged-chr18-20646894-2	chr18	20646394	20647394	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	-18356.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	3.84028752564311	3.87847286327021	3.51190006774379	4.06286009491475	3.74655559412034	3.96649914963866	0.52169254263341	0.349534350058694	0.737574918839617
Merged-chr2-160653149-1	chr2	160652649	160653649	+	546.0	f0_balb.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	7252.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.12902552087523	3.20657644368214	3.02888239140144	3.09750281268459	3.06545111359734	3.2747551369051	0.0698538470748148	0.914543829643924	0.980912729144991
Merged-chr9-109082070-2	chr9	109081595	109082595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	286.0	NM_183250	66167.0	Mm.2395	NM_183250	ENSMUSG00000091537	Tma7	1110017O22Rik|Ccdc72	translational machinery associated 7	protein-coding	6.44161732418032	6.63487170306725	6.39953101289884	6.52014297239563	6.42490384059097	6.40198756351407	-0.0827580832396675	0.758066927620482	0.940048180528243
Merged-chr13-113615735-5	chr13	113615253	113616253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2811.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.32231538383017	8.26864555554825	7.90823539973766	8.16766380307399	8.27824949213031	8.11560882314792	0.00752942259856461	0.973768399158042	0.994114728631892
Merged-chr17-84186414-8	chr17	84185830	84186830	+	824.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001806, exon 2 of 2)	exon (NM_001001806, exon 2 of 2)	1617.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.83062913277718	5.934766955882	5.83472319527633	6.36620949855748	5.58881436090439	5.7110283345573	0.125086450631895	0.728912322572672	0.930478966998914
Merged-chr11-117776509-2	chr11	117776009	117777009	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	intron (NM_145439, intron 5 of 19)	3139.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	3.78766841505961	4.02964896196742	3.94214576062923	3.87333008584732	3.70335650359058	3.64628650296376	-0.567037398139906	0.28640192014732	0.68363782585898
Merged-chr17-24738475-1	chr17	24737975	24738975	+	556.0	f1_balb.idr	intron (NM_013759, intron 1 of 4)	B1_Mus1|SINE|Alu	1882.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	5.58504985448975	5.2584701012992	5.22679000677306	5.98248954346615	6.00804697455092	5.6974093049952	0.988159825281755	0.00368435455784667	0.0489412155251126
Merged-chr10-130247233-3	chr10	130246721	130247721	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	32917.0	NM_001329489	11923.0	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	2.36729479647156	2.47927878597499	2.50933362400509	2.2933984426303	2.26266707076768	2.32828997870026	-1.06754486264257	0.202668331608514	1
Merged-chr11-4714945-3	chr11	4714446	4715446	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	10290.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	3.65467701809906	3.71313903605129	3.74549373544905	4.23859851737774	4.03681537423034	4.60316332032779	1.80201545241492	0.000785067578056183	0.0149619567189416
Merged-chr1-37872269-4	chr1	37871741	37872741	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037918)	promoter-TSS (NM_001037918)	35.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	4.27600396622302	4.53387225909129	4.38100883793716	4.32141711272625	4.03469974380542	4.07488311597544	-0.687627753141216	0.145383069246593	0.508470450103079
Merged-chr13-83572151-4	chr13	83571644	83572644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347566, intron 1 of 10)	intron (NM_001347566, intron 1 of 10)	-1463.0	NM_001347577	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	4.83587734386389	4.33850762500807	4.02867249876456	4.17396734047935	4.03052072178755	3.99266339505149	-1.03386747771777	0.0502252491268369	0.285205384202362
Merged-chr11-109361773-8	chr11	109361281	109362281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038097, intron 1 of 1)	intron (NR_038097, intron 1 of 1)	-1013.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	8.22834736416785	8.22632687201833	7.70501714260275	8.43885878198824	8.77277427226364	7.86291926974388	0.473445651491732	0.118893327929696	0.460948468473309
Merged-chr4-130925882-2	chr4	130925382	130926382	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIR|SINE|MIR	12548.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.26013739109375	3.39841834582857	3.22690186713968	3.12657408813295	2.91284538698353	3.46172426421697	-0.49223786201165	0.470209296566462	0.819358236449544
Merged-chr14-73169537-4	chr14	73169031	73170031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	Lx3_Mus|LINE|L1	26746.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.16789719417995	7.01345226542806	6.77421846351648	6.94782818072457	7.01008878610802	6.71873383226656	-0.149046828393563	0.572690855285388	0.869921264041146
Merged-chr4-6371511-4	chr4	6371107	6372107	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	URR1A|DNA|hAT-Charlie	5927.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.35413876420796	7.54044977622114	7.12459211185701	7.23663921397546	7.54656709702285	7.29328396213143	0.0192092237654097	0.940092250045743	0.986782000249854
Merged-chr6-5102522-3	chr6	5102023	5103023	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	91423.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.63755915339355	3.34695325798947	3.57527990933761	3.40185497960237	3.57527471801182	4.10864744351596	0.673551196078687	0.280028155784596	0.677736555745337
Merged-chr14-73049130-4	chr14	73048625	73049625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133720)	promoter-TSS (NM_133720)	-11.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	6.52971554393681	7.04470208151795	6.46892548540465	6.84874328098647	7.1518699086291	6.6390968233661	0.29181003244298	0.347418427108045	0.735497468013591
Merged-chr16-30062786-3	chr16	30062309	30063309	+	813.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2548.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	5.12888995719346	5.15161115631097	5.22498199532776	5.45024859548005	5.30924161236892	5.15506890645862	0.303705868793557	0.38793143726336	0.767896302403897
Merged-chr8-120365078-2	chr8	120364578	120365578	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123788.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.32727166631089	4.4986471629694	4.24083938749769	3.93305868968608	4.11769154983853	4.01875586020779	-0.934088693165742	0.0519621293994568	0.29107747832705
Merged-chr12-111695727-2	chr12	111695227	111696227	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17226.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	4.41465783736807	4.59034140598643	5.07604895688829	4.58526152665148	4.97433989886573	4.60452369360313	0.0674027688223228	0.884274151763176	0.973466734537782
Merged-chr13-49421178-4	chr13	49420693	49421693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199056)	promoter-TSS (NM_199056)	-30.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	6.25387662861628	6.25306426794194	6.58291944802281	6.1590278979292	6.00197496336435	6.10461348783851	-0.462766149372824	0.111727479771138	0.446437770687515
Merged-chr18-36559886-4	chr18	36559404	36560404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-699.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	8.68394374986634	8.58888479846149	8.13986812255594	8.55390139259819	8.72732423988077	8.34865020049155	0.0808321328711624	0.744707682317067	0.936032341688524
Merged-chr18-10136594-4	chr18	10136122	10137122	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 4 of 32)	intron (NM_009071, intron 4 of 32)	45170.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	4.01159023052432	4.16951671207667	4.14569343070053	4.1089526755508	3.56174564613861	3.9276764905477	-0.685798241082862	0.205182411408313	0.595816936654911
Merged-chr16-36941362-4	chr16	36940860	36941860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	6377.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	7.07441838501271	7.0000967952855	7.24143400959598	7.42357555653971	7.53161748656148	7.32167850096243	0.493269220050227	0.0378320516385783	0.240520274506634
Merged-chr7-80404307-4	chr7	80403801	80404801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081454, intron 1 of 15)	intron (NM_001081454, intron 1 of 15)	1135.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	7.72932596004596	7.73919419349999	7.53088680857408	7.41422383525728	7.78236076643375	7.49610171229804	-0.13483284151664	0.575821909486795	0.87142885060749
Merged-chr14-70765406-1	chr14	70764906	70765906	+	559.0	f1_c57bl6.idr	intron (NM_023045, intron 1 of 27)	intron (NM_023045, intron 1 of 27)	1222.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	3.27168741850575	3.50386309889987	3.30241935935555	3.36489886030033	3.37981881552793	3.13181714773989	-0.250266489386351	0.691521043320357	0.918349474539044
Merged-chr4-136034679-2	chr4	136034164	136035164	+	603.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13015.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	5.12993845382541	4.896292125118	4.94353243417023	4.70731247960882	4.83869100074968	5.00823837972635	-0.319445781089822	0.411679513886035	0.784017205335022
Merged-chr14-25469642-2	chr14	25469142	25470142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	10457.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.53686053581621	6.67743560441805	6.51620333271491	6.11240632869662	5.85391759296313	5.79957401992515	-1.08469246443237	0.000167016141094649	0.00432795984684009
Merged-chr18-61105066-2	chr18	61104566	61105566	+	733.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037859)	promoter-TSS (NM_001037859)	-506.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.97469666425388	5.50844644023174	5.74813595316569	5.79478128036886	5.41094138821943	6.06176330346402	0.0229697300457119	0.949630193987442	0.988243921877722
Merged-chr15-76312497-3	chr15	76311998	76312998	+	918.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-5253.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	6.08090475346547	6.24178566390477	6.61576591567149	6.10510297656094	5.78954438830807	6.34305331078104	-0.396925926395735	0.230059762905547	0.625817164441292
Merged-chr5-16974508-2	chr5	16974008	16975008	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	420607.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.32821020463017	3.44122429372434	3.59417795015419	3.36785986631068	3.61446754449984	3.61245717211514	0.307630973634559	0.600942438656453	0.881855262262798
Merged-chr5-90777780-4	chr5	90777270	90778270	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5335.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	4.91901689315597	5.08692665236005	4.86833867506953	4.85647572058474	4.53803098628798	4.85922155021432	-0.487380306842993	0.22512762118752	0.620052931176432
Merged-chr2-73490621-2	chr2	73490121	73491121	+	834.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-4868.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.36547399258814	5.33663687792262	5.40254404814139	5.15729631841757	5.34196512255231	5.11046173068123	-0.297743871636272	0.393057541782673	0.771429661681589
Merged-chr4-3656446-4	chr4	3655961	3656961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040643)	promoter-TSS (NR_040643)	-45.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	6.97501411259768	6.76182340377202	6.4906520983279	6.94486793029131	7.01807182850259	7.1019128680227	0.387923437174552	0.147996091386645	0.513316330641931
Merged-chr4-152040047-2	chr4	152039547	152040547	+	977.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131076, intron 1 of 10)	MIR|SINE|MIR	726.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	4.1034760641626	3.95751836696361	4.22146775216875	4.01810035095859	3.94926552043763	4.33016118264518	0.0186761317816256	0.970098561175181	0.993347985887136
Merged-chr10-10467183-2	chr10	10466761	10467761	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	5053.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.59836457208436	5.43854688460597	5.48626700620135	6.65572802867802	6.79877906249513	6.52665650692488	1.98377374715394	1.78004418160484e-11	2.75817348720625e-09
Merged-chr12-118302152-4	chr12	118301675	118302675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	-735.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	7.99827100603315	8.61223788854446	8.13436980252418	7.95950548220771	8.41214230707389	8.05547633647167	-0.166538031277472	0.540218926833066	0.85632302227606
Merged-chr7-92641136-1	chr7	92640636	92641636	+	577.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-3994.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	4.12610170338895	4.42101499048716	4.55140651855205	4.35090753280083	4.51456400256572	4.83472567103324	0.508000040141677	0.276990570042241	0.674327258026121
Merged-chr11-63921407-2	chr11	63920926	63921926	+	606.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_018805, exon 1 of 2)	exon (NM_018805, exon 1 of 2)	858.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.01446879339527	2.93702513168131	3.12886318966613	3.77486457961221	3.97525490533529	3.82909608759339	3.84346891212238	4.43980490307534e-07	2.64632726629722e-05
Merged-chr14-31422205-2	chr14	31421705	31422705	+	676.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4528.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.81732449756613	6.84829606442707	6.82352067681556	6.65472500321906	6.69750583413685	6.46506262033301	-0.332723748425286	0.192114432920086	0.579130364084242
Merged-chr6-48504359-4	chr6	48503852	48504852	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015597)	promoter-TSS (NR_015597)	13.0	NR_027808	58894.0	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	3.50779563675244	3.78398952678772	3.8470417769658	4.32867737890913	4.10689605816365	4.29254302588438	1.60561424390646	0.00237683112443693	0.035259647745079
Merged-chr3-95955849-2	chr3	95955349	95956349	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	2.73479031697014	2.46306890830015	2.63648120814702	2.63208437405107	2.68266851582937	2.83215963215307	0.542309850348405	0.481161058680023	1
Merged-chr7-127588234-4	chr7	127587713	127588713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	382.0	NM_001033040	233899.0	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	5.62948879361517	5.42170452207489	5.22434200996475	5.39290417118314	5.17654536716354	5.66907118810197	-0.0550779809343162	0.880819655529412	0.972620786559158
Merged-chr5-5367715-4	chr5	5367197	5368197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	12554.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.23226762186877	7.68392866879764	7.19812264841184	7.50689157020179	7.71470552924402	7.36285349958992	0.209923984881041	0.432547382556233	0.797386699146392
Merged-chr1-33982176-3	chr1	33981664	33982664	+	839.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-29661.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.15804517826417	3.88775079329846	4.31944656031396	3.6890701643308	3.96998401924192	3.67102843409654	-1.00969236264561	0.067431385411577	0.339619184277864
Merged-chr11-70791780-4	chr11	70791272	70792272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 4 of 4)	intron (NM_001045526, intron 4 of 4)	20789.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.6454030748248	6.29616137118688	6.59586580635293	6.50124124350743	6.48616270093622	6.86452556373719	0.162854872948883	0.571978849529783	0.869773807126863
Merged-chr17-33950427-1	chr17	33949927	33950927	+	670.0	f1_c57bl6.idr	TTS (NM_020603)	TTS (NM_020603)	1061.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	4.78905898224957	4.73341096911467	4.89564908273921	4.15647229357715	4.52226590763835	4.58903397344761	-0.888167362563417	0.0431158698962469	0.260489363887446
Merged-chr18-23866167-3	chr18	23865665	23866665	+	626.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	62195.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.75743319399278	3.8601957875357	3.85000168093028	4.1384592560872	4.00871927346205	3.8151452971551	0.544803717742861	0.289138083329432	0.686633011876864
Merged-chr14-61498962-2	chr14	61498462	61499462	+	662.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	6274.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	3.55019994315683	3.26323920816949	3.3944776791053	3.50950353490004	3.57739720428162	3.82779550084931	0.833064434520176	0.161719093346178	0.534851238886631
Merged-chr5-140322010-2	chr5	140321510	140322510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	388.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	6.77683471899052	7.11527675853432	7.13540852214754	7.23226378932247	7.47490554210997	6.86222793236558	0.31423936011319	0.268671549515256	0.665920654495409
Merged-chr1-165741841-4	chr1	165741330	165742330	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21928.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.16737871896156	3.82660984970611	4.17827199493716	4.22365373555014	4.29416863757263	4.290783066509	0.582468218961124	0.230127341882312	0.625949980822576
Merged-chr6-8339658-4	chr6	8339150	8340150	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	80362.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	3.84950600852487	3.89435936969304	4.00962455984938	3.90346383685198	3.95366926191339	3.93382132888303	0.0513572861232163	0.91827057891555	0.981747877135909
Merged-chr17-5847167-2	chr17	5846667	5847667	+	998.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	B1_Mur4|SINE|Alu	5787.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	5.11580953143045	5.22906752544587	4.92292883491546	5.47176422344627	5.57265365071659	4.95029535679035	0.541786375103834	0.168575028327593	0.545184755223438
Merged-chr8-22496929-3	chr8	22496442	22497442	+	800.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011394, intron 1 of 10)	ORR1C2|LTR|ERVL-MaLR	-20063.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	2.09622555017255	2.07557077324747	2.09479254206704	2.49911327094912	2.38309232753158	2.57265854429744	3.15899761323427	0.00217494802388105	1
Merged-chr4-155481510-4	chr4	155480980	155481980	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9881.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.43401278969627	4.19632347246738	4.47937427088954	4.0446454343598	4.09657581301845	4.20829118204265	-0.71085707711393	0.130287178908599	0.48249766761863
Merged-chr11-83619212-3	chr11	83618716	83619716	+	962.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-26129.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	5.41329517051951	5.39026049759454	5.34108219493577	5.38154335375677	4.90152874155513	5.24708852604704	-0.401828852633797	0.274172369704403	0.671685022607599
Merged-chr4-102576278-2	chr4	102575778	102576778	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	6218.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.14088448997873	4.33752022174862	4.59111200321166	4.28196314045108	4.39133691119876	4.37501295895476	-0.0214801218689891	0.962902670854658	0.991016963580472
Merged-chr9-62876270-6	chr9	62875693	62876693	+	862.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102468)	TTS (NM_001102468)	-14169.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	4.3656851071816	4.18013587723942	4.36828686474219	4.36664933272571	3.91613244814265	4.30608913643117	-0.276098924033803	0.571445669657709	0.869536259548282
Merged-chr13-54071892-6	chr13	54071423	54072423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027324)	promoter-TSS (NM_027324)	78.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	6.59682546504458	6.3534618273108	6.05714795961842	7.28257862071437	6.88166048803734	6.06875480277576	0.76528743732428	0.0451673668414788	0.268161702472049
Merged-chr6-122863963-3	chr6	122863430	122864430	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	5.65401133111239	5.23093957010091	5.70884712357757	5.37318813803968	5.1084623050669	5.19740637541702	-0.613001393960856	0.0950741942056557	0.411119795295303
Merged-chr2-18976405-4	chr2	18975904	18976904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	21717.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	5.0730558241043	5.22237469933582	5.34008112534327	5.00325041964779	5.15564214360472	5.54009875498573	0.0628884419587075	0.868184775352127	0.969642939011354
Merged-chr18-68059578-4	chr18	68059071	68060071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126398.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.86213243007798	5.43233581478327	5.00967418684773	5.03064627579354	4.88922168670812	5.14994075266062	-0.949299123739569	0.0203816618546308	0.163461149109742
Merged-chr8-94601321-2	chr8	94600838	94601838	+	766.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	388.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	6.7260376350662	7.21665177365567	6.9551035995034	7.02087183175403	7.24574802829967	7.01325306817253	0.178814782363243	0.508665332321456	0.839881796236556
Merged-chr17-46351213-2	chr17	46350713	46351713	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-23190.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	3.19552826633077	2.77162157371128	3.03651986777511	3.08923484440323	3.04018515749341	3.27972892898782	0.54045208994236	0.442360330401908	0.803209439640776
Merged-chr4-34269320-3	chr4	34268827	34269827	+	946.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219260.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	3.55772396883886	3.68047784735498	3.79735585146883	3.58341901908521	3.29370128163722	3.50673796473536	-0.77951850379372	0.181068839146446	0.563309390781554
Merged-chr8-91070072-4	chr8	91069570	91070570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282000)	promoter-TSS (NM_001282000)	13.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	7.53582608434551	8.18976338760456	7.86534654945447	7.49709054016968	7.77427589913507	8.02565130811795	-0.162303896872523	0.563494252496017	0.86598876607666
Merged-chr14-72708842-4	chr14	72708333	72709333	+	649.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	1170.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.27973166297555	4.17477417923079	4.18450709945791	4.72447913806614	4.03538108937	4.47704379701561	0.588926183507851	0.238043697489343	0.634600153168437
Merged-chr6-72617600-2	chr6	72617100	72618100	+	818.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009444)	promoter-TSS (NM_009444)	-600.0	NM_009443	22134.0	Mm.246563	NM_009443	ENSMUSG00000056429	Tgoln1	AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1	trans-golgi network protein	protein-coding	5.50146716943585	6.03800728910171	6.04398840625157	5.60811686904635	6.13249739120643	5.45260420804426	-0.182050162417116	0.633993699203133	0.896247399650521
Merged-chr2-164864586-2	chr2	164864086	164865086	+	993.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6878.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	4.28331460801412	4.01803427364694	4.71051520408176	4.25995274749524	4.2442019715336	4.39682499572603	-0.15472560603221	0.7557989658333	0.939419818789693
Merged-chr8-70615253-2	chr8	70614688	70615688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1656.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	7.48831882073074	7.63501474284355	7.97632033636174	7.79718142637077	8.08989476523841	7.6287014823479	0.214685637941711	0.412139771803872	0.784314318706468
Merged-chr18-84682798-2	chr18	84682298	84683298	+	923.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	-739.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	5.33818830797296	5.60601870584658	5.4392958845329	5.44227170236516	5.76656429670108	5.53205061007302	0.241100324240789	0.478924936519649	0.823933881609538
Merged-chr11-59223004-3	chr11	59222513	59223513	+	639.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	5149.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	5.53490697019126	5.66932374549668	5.80324334660336	5.77694140812533	5.91133811936017	5.57092425024518	0.19317036891738	0.550686349190309	0.860724721466829
Merged-chr10-94379447-2	chr10	94378947	94379947	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	67498.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.74139686509371	3.71820681599016	3.99976778356191	3.57441286077273	3.51974870652854	3.78712866420816	-0.654502866432219	0.23723897962309	0.633672456067794
Merged-chr16-32244242-3	chr16	32243821	32244821	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173439, intron 1 of 2)	intron (NM_173439, intron 1 of 2)	2704.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	3.67278399408772	3.99982933480538	3.8878806586859	4.05821004808269	3.93981641416815	4.19116597256145	0.600226805799672	0.246680270471708	0.643782025373544
Merged-chr7-80993661-6	chr7	80993118	80994118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178707)	promoter-TSS (NM_178707)	-66.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	7.1081331460998	6.47129981992965	6.75478863036614	7.05663407186338	6.23587204161367	6.51099434599113	-0.245389382559829	0.47861718175812	0.823834402333981
Merged-chr7-80084700-3	chr7	80084168	80085168	+	933.177795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 2 of 4)	intron (NM_175433, intron 2 of 4)	-9411.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.04526588565277	3.85594164278609	3.92181624669367	3.58396370998308	3.53181308831383	4.25324497354203	-0.362878483595797	0.540171274036085	0.85632302227606
Merged-chr1-132341911-4	chr1	132341410	132342410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25785.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	7.48750700146944	7.8150390400307	7.55190745235106	7.82230661434781	7.99529144506708	7.75747182165869	0.340714681601647	0.148081435987386	0.513526720248328
Merged-chr10-128269873-2	chr10	128269373	128270373	+	587.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-625.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	6.37696077959523	6.68480261684943	6.30707346558101	6.575316544393	6.9651828595526	6.282933253791	0.286023917397269	0.365548636971745	0.750706881219779
Merged-chr14-45221221-2	chr14	45220721	45221721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	1504.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	5.99937097307057	5.80414784533656	5.4485998887262	6.33032875627456	6.53850850813767	5.82021327612084	0.84650311825948	0.0183220787822406	0.152729265809725
Merged-chr14-54768528-4	chr14	54768020	54769020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	13366.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.8340476033137	6.89227869822125	6.67849824193576	6.63937874345805	6.64401153936021	6.7049758849526	-0.235569584893146	0.351520522019738	0.739347326817278
Merged-chr3-104165580-3	chr3	104165068	104166068	+	934.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 1 of 21)	L2c|LINE|L2	54838.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	2.65500989810117	2.45537271419598	2.70852824733764	2.67288883799844	2.74972241494724	2.38678989309109	0.0372619808986939	0.964389699368402	1
Merged-chr19-8871520-4	chr19	8871012	8872012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362044)	promoter-TSS (NM_001362044)	-36.0	NM_146093	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	7.77368231430266	7.95560909364685	7.8044188891859	7.72836488979624	7.94743193998821	7.57808677958008	-0.114988054268034	0.621593581624779	0.890824801601999
Merged-chr8-105826646-6	chr8	105826184	105827184	+	893.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 1 of 13)	intron (NM_145824, intron 1 of 13)	666.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	6.69766196548524	7.30035689090911	6.72815093566886	7.1810023107165	7.36168593465035	6.91313402861438	0.336086531201664	0.264982551405675	0.662790696671811
Merged-chr3-89392536-2	chr3	89392036	89393036	+	759.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	-467.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	6.3019193306965	6.63304894092124	6.86253934051998	6.67209886053459	6.91066837433826	6.87899530805385	0.337550048778248	0.237704089759351	0.634225619096145
Merged-chr16-4003821-4	chr16	4003312	4004312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2134.0	NM_177472	52864.0	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	6.70896122446474	6.77410358971502	6.44740470396601	6.82012873650764	6.77830372249125	6.82711799810186	0.228201609120418	0.380627920396554	0.762649007906869
Merged-chr2-103488992-4	chr2	103488491	103489491	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3838.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	3.8831660403527	4.11504053293018	4.2350270001083	4.49681754200578	4.40157412002205	4.34779486222156	0.92688472863172	0.0490522716560872	0.281407985380564
Merged-chr12-108764492-2	chr12	108763992	108764992	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Ricksha_c|DNA|MULE-MuDR	-28819.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	5.59846740153563	5.6371273711568	6.0107991828716	5.55755952197445	5.60337529324438	5.69939685296357	-0.241967290654018	0.46333689177579	0.815799621886541
Merged-chr6-39416524-2	chr6	39416024	39417024	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	3252.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	4.07037125517033	3.76377112924059	4.54867168504973	4.06632468162269	3.95983157479626	4.30659782415839	-0.128987222673073	0.814642812086017	0.956369939298364
Merged-chr7-19740521-2	chr7	19740021	19741021	+	961.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	9052.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	3.3159628052495	3.26336800894769	3.77862023563447	3.51933488623195	3.40246200945814	3.60502008455612	0.160274155386324	0.795581479317319	0.951201802693417
Merged-chr4-58504821-4	chr4	58504324	58505324	+	819.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-5421.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.61383781241887	3.38020122555696	3.58363682809002	4.10337570378884	3.87189863091961	3.59956768655032	1.17968784046367	0.0408028205997753	0.251970659825335
Merged-chr8-109706002-2	chr8	109705502	109706502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029468)	promoter-TSS (NM_029468)	-17.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	6.86226593028829	6.77418194537747	6.93788229430992	6.69533860094788	6.31719719082323	6.40227515756385	-0.593922761602162	0.0287025261029039	0.203135245729856
Merged-chr6-8509812-4	chr6	8509316	8510316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040452)	promoter-TSS (NR_040452)	216.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	7.91569492320175	7.47921905031282	7.57317917533224	7.77087275482505	7.17533367816635	7.50152681705688	-0.245469927093	0.375709847410445	0.758886605954294
Merged-chr11-53797740-2	chr11	53797240	53798240	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	27267.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.95511927317683	4.95489975640675	4.90945059398502	4.94265329997574	4.87901061206655	4.90074052238577	-0.0772048208634048	0.836601739491163	0.962001762335242
Merged-chr4-142091270-4	chr4	142090764	142091764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6960.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	7.06346689211726	6.69760402118325	6.97374441995754	6.81766997285324	7.29866200771321	6.53745450347772	0.029460854864938	0.924393776828239	0.982960139621551
Merged-chr17-17883898-4	chr17	17883403	17884403	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013521)	promoter-TSS (NM_013521)	36.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	6.68460677595252	6.61977934787018	6.68257608862777	6.82594609296203	7.13157541926312	7.26942440954725	0.654847935539382	0.0126122485293279	0.11832839943083
Merged-chr18-49831683-2	chr18	49831183	49832183	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1314.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	5.14063403836665	5.3011080338033	5.35986692545619	5.23212817546574	5.29050225449817	5.23670599502568	-0.0201471748503031	0.953785786756952	0.989446911725587
Merged-chr17-71834505-3	chr17	71834000	71835000	+	989.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52553.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	6.11867077848547	6.27665834204547	6.22031724189032	4.22749429830055	3.78121678111925	4.37937336055668	-5.49923703924151	5.93613209986617e-21	4.44985297086184e-18
Merged-chr15-6708310-4	chr15	6707809	6708809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-72.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	6.50413093795233	6.56785396589701	6.23704057887073	6.37644389110844	5.94023162179103	6.003645734305	-0.547605756852027	0.0719693777454273	0.352284832798441
Merged-chr4-106317198-2	chr4	106316698	106317698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 1 of 67)	intron (NM_183225, intron 1 of 67)	985.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	5.90838501311493	5.88558055424389	5.70490025577948	5.67264912813061	5.44956859552422	5.34970263844796	-0.626977974414684	0.0540227527384268	0.298164314795637
Merged-chr8-94363504-4	chr8	94362996	94363996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22933.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	4.56478613509775	4.272660396158	4.40680193750283	4.38496046677902	4.25950110432994	4.34240992913297	-0.244747594123803	0.585535867439324	0.875041527312205
Merged-chr1-138275125-4	chr1	138274625	138275625	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177397, intron 1 of 2)	intron (NM_177397, intron 1 of 2)	1387.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.23817731984006	4.13508947530032	4.37923023202284	4.1906158602832	4.07554498775789	4.23136599310863	-0.2389944080097	0.609094083804485	0.885053989692691
Merged-chr18-36515234-2	chr18	36514734	36515734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010415, exon 2 of 6)	exon (NM_010415, exon 2 of 6)	571.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.8921882669799	6.55368937298263	6.51386857197385	7.13390261633495	6.8968279038922	6.51729060721569	0.329172916378753	0.269289765178546	0.666438561847887
Merged-chr6-42339418-4	chr6	42338903	42339903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10425.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.00359718227992	5.8402764810317	5.81787776904278	5.57205244569635	5.93911473189412	5.87943419607651	-0.148012073862881	0.640270386772393	0.898404369829977
Merged-chr19-4229646-2	chr19	4229146	4230146	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-2247.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	3.05780947054488	2.543589363743	2.70017860830849	2.89196546393258	2.69609093067229	3.02096765558504	0.414749707142582	0.602166732599937	0.88225227970428
Merged-chr10-34249688-4	chr10	34249157	34250157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32533.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	4.74735181140832	4.28991998319018	4.21983169300569	4.50899667114049	4.37787062144913	4.47389959696548	0.00413104118847987	0.992969996203523	0.998634783457053
Merged-chr3-36151034-4	chr3	36150518	36151518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101478)	promoter-TSS (NM_001101478)	-62.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	4.177817332197	3.91273222981095	3.66157332753763	3.92294030188631	3.89981909731452	4.1429322674482	0.132478295434351	0.806323685800138	0.954125791654011
Merged-chr6-83630417-2	chr6	83629884	83630884	+	578.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	25732.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.084689897014	4.83796788884967	5.27701902852462	4.77845058802548	4.98075179129922	5.36779102227337	-0.0309223041116323	0.940002181735687	0.98676214644374
Merged-chr5-139338572-2	chr5	139338072	139339072	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 2 of 2)	intron (NM_197980, intron 2 of 2)	6594.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	5.70011666524251	5.50193295400622	5.67286104926262	5.63250924200221	5.76285013153429	5.62668032049685	0.10381988042869	0.744152887990322	0.935904980409593
Merged-chr19-10818715-4	chr19	10818220	10819220	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	11338.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	3.23005376494384	2.90534137250922	2.83814028174618	3.38112151926908	3.21488580247065	3.34612979310221	1.30882016270739	0.0665358572177464	0.336943314915358
Merged-chr9-40800108-4	chr9	40799604	40800604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	8.92408170805727	9.22675413762918	8.77928148667007	8.78399264101621	9.2691638748174	8.66466080047468	-0.0731792934133352	0.777639273706014	0.945202525595529
Merged-chr2-128784152-2	chr2	128783635	128784635	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 15 of 18)	intron (NM_008587, intron 15 of 18)	-34168.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.30421509536733	3.08508736574823	3.74011512762495	3.35514983459542	3.28819932223041	3.76230639067299	0.294539527298908	0.662411427174453	0.906792941744266
Merged-chr19-17251574-3	chr19	17251050	17252050	+	639.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	87955.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.70982836113341	5.92287490075385	6.05049308713935	6.84737118408964	6.907918932613	6.69836636868504	1.53370941841104	4.34403237609892e-08	3.41642954584536e-06
Merged-chr2-60880144-2	chr2	60879644	60880644	+	754.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	1294.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.297935059327	7.50212196558962	7.29434937178686	7.48599750926349	7.55723226150255	7.16880707098105	0.0765035790160075	0.757095264331489	0.939819795914786
Merged-chr1-171345620-4	chr1	171345098	171346098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360824)	promoter-TSS (NM_001360824)	47.0	NM_001242580	27045.0	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	7.93297833053076	8.04969608898584	7.71609906699965	7.75612086151202	7.89698170031016	7.35999761588273	-0.302196786486958	0.23764009847361	0.634133708992116
Merged-chr11-5786376-2	chr11	5785876	5786876	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2107.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	6.4998044899992	6.29779545600735	6.48614882633648	6.58115633010604	6.89319635748653	6.52771362440832	0.416403428748446	0.13418899181579	0.489826612459235
Merged-chr6-58594442-3	chr6	58593897	58594897	+	637.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 1 of 15)	intron (NM_001355477, intron 1 of 15)	-2275.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	3.09936010541321	3.01516948392673	2.71504535116472	2.92417858491828	2.74561432427364	2.98170014665068	-0.356359742384976	0.629660284926198	0.894364606069187
Merged-chr1-80454202-4	chr1	80453705	80454705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	8273.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	4.50718609493038	4.01113447384991	4.46215870809157	4.27297244863163	4.41374609899987	4.68236742491517	0.304052581849039	0.531064076594552	0.851378188817981
Merged-chr5-5418503-4	chr5	5418002	5419002	+	752.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-38251.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.03619499162097	5.43304005091171	5.42319169963397	5.2846807338988	5.16807065711654	5.59381776958538	0.0848634101737396	0.820840800182726	0.957870709971344
Merged-chr7-29230935-2	chr7	29230435	29231435	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	1587.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	5.05527629227166	4.90078313605516	5.17499954903489	5.83202136566248	5.6162194098351	5.40239857217073	1.17695579925001	0.000972123741388079	0.0176227608438822
Merged-chr4-46452545-5	chr4	46452000	46453000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	1574.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	7.44609636864155	7.14629559771645	7.47617522649455	7.73242650049904	7.07448099787496	7.1377740147923	-0.0119732652071663	0.967152044588059	0.992479541792373
Merged-chr17-27935737-2	chr17	27935237	27936237	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	26431.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.32679047092523	5.94691963621253	6.1238132829485	5.94196443519676	5.79152532328608	5.96123579875984	-0.430011231114465	0.158947274841154	0.530896148241118
Merged-chr2-71025640-2	chr2	71025140	71026140	+	660.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-7266.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.56457290271391	3.61192313770281	3.44310783609918	3.49890562636951	3.40084119009669	3.51440573892916	-0.28657627488365	0.617518155303454	0.888810836054056
Merged-chr2-46245944-4	chr2	46245435	46246435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	549330.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.07461122768136	5.44619611999612	5.39730919588733	5.32860287612438	5.23867524826116	5.48846955086908	0.0667549586104066	0.852475031267162	0.965385693881201
Merged-chr8-83140202-3	chr8	83139684	83140684	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25168.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.12728251530754	6.48810490735099	6.36084723512746	6.19849745298443	6.04130071237249	6.52559526078491	-0.125132650970577	0.683352947381768	0.915405812537103
Merged-chr1-157413199-2	chr1	157412714	157413714	+	653.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-619.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	4.95498880529059	4.88366792763054	4.99795822716723	4.98257886951093	4.84240141409343	5.06224139461495	0.0313376359868721	0.933743318511055	0.985588335130442
Merged-chr2-27768008-4	chr2	27767513	27768513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	57430.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.69109248790632	6.42643639272598	6.49078049987326	6.26766929872559	6.24710033053707	6.46114318047822	-0.361495198140345	0.190172308134813	0.576335133132339
Merged-chr14-67715412-3	chr14	67714923	67715923	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285933)	promoter-TSS (NM_001285933)	187.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	5.64530848726324	5.7460699093707	5.56166151791252	5.88822523018409	6.14789932077747	5.94166385433925	0.615398748615678	0.0472198786266819	0.275222167327609
Merged-chr6-106800046-4	chr6	106799520	106800520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175357)	promoter-TSS (NM_175357)	67.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	6.93132195424795	6.96001123015203	6.78737793913509	7.22329533723616	6.9769947500338	6.7162868876906	0.147558618005035	0.58081709997248	0.873082871238033
Merged-chr11-107012811-4	chr11	107012288	107013288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13263.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	7.82682506347903	7.81626606508951	7.7542016388564	7.86901755591326	8.33051818817806	7.66402261914301	0.279807859098075	0.283196327787266	0.681169665885673
Merged-chr15-6602110-2	chr15	6601610	6602610	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22263.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.1094353474717	7.10115716447159	7.10501738903928	6.99794536811617	7.19353689268666	6.99127079425069	-0.0515865260167846	0.829717598539546	0.960134151531511
Merged-chr4-9670580-3	chr4	9670108	9671108	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1264.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.69157405441359	4.75375433327642	5.23434080582184	5.90892923614192	5.6371631733813	5.67154928165955	1.69686850894566	6.99106812540474e-06	0.000295135868380861
Merged-chr2-114624817-3	chr2	114624290	114625290	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	30174.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	3.8647307447159	4.12026331642928	4.04676852132062	3.74427717747051	3.6153448776471	4.06912988862918	-0.629604731719958	0.242435919807368	0.639547524422404
Merged-chr9-21012061-4	chr9	21011599	21012599	+	837.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3841.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	4.47814091410824	4.63861139355706	5.04569696763533	4.63853638815707	4.36434682671061	5.0469514820669	-0.0711605586310835	0.880619006747619	0.972559081434736
Merged-chr17-5138915-4	chr17	5138393	5139393	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	143819.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.17459776224486	4.03315604615545	4.07174609727252	3.8550530861405	3.93702814475693	3.99673950541009	-0.499459523231223	0.310048973749974	0.705630453428184
Merged-chr18-46577672-4	chr18	46577177	46578177	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4a2|LINE|L1	-3144.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	3.87426613471151	3.68473121746368	3.70496565906224	3.56287610947138	3.4086311015326	4.01307506666971	-0.268631030908728	0.649283823045388	0.902147045789438
Merged-chr5-124443288-4	chr5	124442794	124443794	+	924.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	-2205.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	3.8545259311913	3.93219400273665	3.70853693734966	3.98605113576948	3.87445640063783	3.77972703803266	0.138935913608811	0.790151312355063	0.949368241827272
Merged-chr12-70911182-4	chr12	70910677	70911677	+	881.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-26680.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	3.88243375563231	3.78579989017981	3.68378525909295	3.68749967983632	3.81836170463398	4.09528845381821	0.253879810736404	0.637623028805392	0.89735407749672
Merged-chr1-9549414-3	chr1	9548921	9549921	+	785.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	1473.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	3.59848342863987	4.1435658745475	3.96385815376435	3.70634925906228	3.87187028220277	3.49550670456866	-0.682352572379945	0.24966806036952	0.646693436907828
Merged-chr3-69193227-3	chr3	69192733	69193733	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29186.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.36709340826383	3.47919569212548	3.35605978190788	3.63908290311567	3.73880223412459	3.70423549178297	1.04616630928555	0.0671585984728648	0.338818447931252
Merged-chr2-181239042-4	chr2	181238535	181239535	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 4 of 18)	L1_Mus3|LINE|L1	2992.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	3.84894581595924	3.41877200205081	3.69524189995599	4.22167698135313	3.90221080347183	4.4893376541063	1.68279953268105	0.00362343910543422	0.0483947224855491
Merged-chr19-34213079-3	chr19	34212579	34213579	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-4429.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	4.09711233023155	3.8188883562728	3.99160661431966	3.28589069786928	3.57936500944033	3.49153585054587	-1.75746445531355	0.00330690058117903	0.0452523964810882
Merged-chr16-90397057-4	chr16	90396549	90397549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 1 of 10)	MLTR14|LTR|ERV1	10652.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	5.15429701249796	4.70844109873242	5.12583981160117	4.44630481184032	4.42159349347571	4.57904829019487	-1.23610559264889	0.00375243611828137	0.0495843583500009
Merged-chr12-80063982-4	chr12	80063490	80064490	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49023.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.67345448607972	3.35426345986306	3.5631130395722	3.7512746507971	3.43179412614837	3.34788908265891	-0.0437804053119304	0.942549260855851	0.987202156853573
Merged-chr8-40023644-4	chr8	40023139	40024139	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	263314.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	3.33790737918053	3.43330700442127	3.39926683755016	3.28313291211635	3.24057172388052	3.5732517037437	-0.0993435634598294	0.870360258715773	0.970065609722504
Merged-chr6-32460586-4	chr6	32460082	32461082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-50559.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.00842971141157	5.18800516295049	4.90111695212996	4.69460998083724	4.4449244947525	4.85570186845339	-0.863577957361725	0.0345322385297202	0.227737061391849
Merged-chr12-41197453-4	chr12	41196968	41197968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	173378.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	6.34025893131186	6.48052924561161	6.18891899414994	6.49241207464984	6.82944300543027	6.39515159126358	0.401101184478923	0.168158614264876	0.54458715170853
Merged-chr10-94549968-2	chr10	94549468	94550468	+	682.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359760)	promoter-TSS (NM_001359760)	-904.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.6256076424937	3.89631107437435	3.85492069238341	3.56488394592687	3.48733115418341	3.82705129625312	-0.577988074072937	0.30326486885646	0.699896355683373
Merged-chr5-107988145-4	chr5	107987668	107988668	+	915.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1091.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.86053742428385	5.11711764894971	5.05404809478017	5.21744447768268	5.1679908544793	5.25036257929089	0.407355285253148	0.263282255152025	0.661289238308673
Merged-chr17-15810753-3	chr17	15810228	15811228	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	15858.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.61637828596077	3.81878347947512	4.08707968943571	4.25564248388362	4.12302823292465	4.28712351387382	1.11561121326768	0.0311864106306565	0.213920998864105
Merged-chr2-158157503-2	chr2	158157003	158158003	+	738.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11111.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	2.55612386050789	2.62958966683948	2.57071042147803	2.99286012074877	2.77291544331887	2.96121579792289	1.75636223969707	0.0223422105493599	0.17369435255453
Merged-chr1-152575142-4	chr1	152574650	152575650	+	838.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	50067.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.2745996662698	4.77827464048439	5.0567213291752	5.40412058914828	5.43748599941068	5.12230317304685	0.576702825447352	0.135487801563158	0.491999170483865
Merged-chr9-5345504-4	chr9	5345011	5346011	+	695.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009808)	promoter-TSS (NM_009808)	35.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	4.16518527253488	3.94473091411121	4.08128512382479	4.32831416490477	4.30729305070403	4.57856460265655	0.920853104999772	0.05144953982888	0.289206589557218
Merged-chr15-85335875-1	chr15	85335375	85336375	+	548.5	f1_balb.idr	promoter-TSS (NM_016843)	promoter-TSS (NM_016843)	-506.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	4.43392532985926	4.18512183140924	4.11933557519622	4.46546637457875	4.32075059644469	4.66334421688309	0.575935996454417	0.216804902963324	0.610384109821427
Merged-chr13-43802952-4	chr13	43802451	43803451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289915, exon 5 of 5)	3' UTR (NM_001289915, exon 5 of 5)	17839.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.39922695466428	4.3292618360839	4.50730745459022	4.33491264400607	4.01061326860138	4.45242220827031	-0.376742470947841	0.422366763686895	0.791187261128029
Merged-chr6-125271694-4	chr6	125271209	125272209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6184.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	7.29452711115042	7.01217844214474	6.83442431364065	7.11160654254432	6.97951225508166	6.62622089229495	-0.210731259219791	0.455199882460634	0.810850567748235
Merged-chr1-155973326-4	chr1	155972865	155973865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-110.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	8.06279243502851	7.97697132045048	7.93760514118382	7.98448684292282	7.85370905862037	7.72722712446519	-0.188878626563844	0.385643995645773	0.766626026463756
Merged-chr10-8859659-4	chr10	8859156	8860156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1F1|SINE|Alu	26414.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.50346604965056	7.42454369950661	6.80891554714508	7.17949694786464	7.31860775401613	6.96110421701571	-0.185658488238627	0.52455689345666	0.848725345027108
Merged-chr14-33393473-4	chr14	33392951	33393951	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	MTD|LTR|ERVL-MaLR	17573.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	5.80231458005631	6.01015649829671	5.87154032690123	6.44919171752163	6.69835073147171	6.23628849861414	0.984575166461742	0.00104752424506066	0.0186683224208626
Merged-chr10-95301288-2	chr10	95300788	95301788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	22421.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.24398315194977	5.98790539769799	6.16938735351923	6.00066567069608	6.22361660339932	6.07902892238656	-0.044576651877127	0.879153224647191	0.972083703102674
Merged-chr8-91313401-4	chr8	91312907	91313907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173431)	promoter-TSS (NM_173431)	-118.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	5.84633815962348	5.91971819175642	5.96097682955027	6.71177665664786	6.89071211018273	6.25291267236593	1.24404090477406	4.73911766919406e-05	0.00150911788372866
Merged-chr18-69666922-4	chr18	69666396	69667396	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258663.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	6.34229065919784	6.48162748699704	6.19729408215488	6.25774041355133	6.42789842843405	6.52553471798134	0.0844138030048117	0.763289176253999	0.941757897373055
Merged-chr7-105639405-2	chr7	105638905	105639905	+	860.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029802, exon 2 of 8)	exon (NM_029802, exon 2 of 8)	1011.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	3.47657429561607	3.36388080595526	3.31717075538613	3.54297335494697	3.36173324856081	3.44626766448872	0.226797982961495	0.701582703920445	0.921402427952908
Merged-chr17-78401416-2	chr17	78400916	78401916	+	994.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	MLT1B|LTR|ERVL-MaLR	16736.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.79714446142955	6.03647699513707	5.7352024522248	5.43524512415886	5.56434153530022	5.77143100153125	-0.510135783370812	0.116925767078944	0.4565965471703
Merged-chr10-88731409-4	chr10	88730902	88731902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	-12.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	8.01718687628555	8.2647851371856	7.93001841837374	7.89525798776687	8.06487239559637	7.80521722950516	-0.215356422126859	0.349815692043404	0.737850493131577
Merged-chr1-179517575-2	chr1	179517075	179518075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	466.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	6.32726727941916	6.79236968992749	6.4334659477446	6.35195734885048	6.62136185647977	5.99215176910835	-0.285503498765463	0.377892214421481	0.760222685045705
Merged-chr12-3222311-2	chr12	3221811	3222811	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13480.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	3.25328935201872	3.25095794880115	3.19283303921508	3.39054655683119	3.15849151348	3.32259459425872	0.228610672780792	0.713015627251845	0.925337672624826
Merged-chr10-75921432-7	chr10	75920923	75921923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161853, exon 1 of 9)	5' UTR (NM_001161853, exon 1 of 9)	191.0	NM_011418	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	6.58395412099423	6.82632958272195	6.84678716495471	6.83465327216737	6.78805784249075	6.57008702142766	-0.0186910901269967	0.943558621002409	0.987453245208137
Merged-chr16-23986369-2	chr16	23985869	23986869	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	2483.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	4.55490734472416	4.87064563580539	4.66220069380074	5.15475166116846	4.5941369172846	5.21934205954771	0.674994645302388	0.125842455473482	0.4745139364226
Merged-chr8-123102357-4	chr8	123101875	123102875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	25.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	7.09024676294708	7.37461501896626	6.93821687943773	7.27726642776439	7.15434217834578	6.9672467957314	-0.0186636431238633	0.943388907808992	0.987377570608805
Merged-chr18-52684440-4	chr18	52683930	52684930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9249.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	4.4686343807807	4.11807183879059	4.26580054826439	4.37773188028946	4.50759233649178	4.4234544442985	0.379719404788848	0.40486249925549	0.779791650050306
Merged-chr9-122805581-4	chr9	122805121	122806121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013405)	promoter-TSS (NM_001013405)	74.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	7.40907983928938	7.92035847034396	7.66042996247631	7.68298989441265	7.56577612983129	7.76934090576664	-0.0164645843746185	0.947570752785736	0.988008807662239
Merged-chr11-32715751-2	chr11	32715251	32716251	+	576.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 3 of 12)	intron (NM_001271347, intron 3 of 12)	73196.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.79857182835758	2.99886820823073	2.94606330595953	3.04297867981202	2.88421059799873	3.07756593505392	0.390994865760872	0.570702722987948	0.869253690275099
Merged-chr15-97576922-4	chr15	97576417	97577417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128905.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	6.68761233294374	6.89402909931831	6.65821825824624	6.24915016347669	6.45427268142431	6.18755431377284	-0.710661956221875	0.00992007269249955	0.099918824427733
Merged-chr14-60266603-2	chr14	60266103	60267103	+	654.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	1398.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	5.46989023589623	5.54049017764961	5.55321416746161	5.78073611843315	5.8007139283149	5.96387733584522	0.601831030034205	0.0543312992980063	0.29933483422739
Merged-chr14-55560681-5	chr14	55560119	55561119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199009)	promoter-TSS (NM_001199009)	-304.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	8.80449667670667	9.02530848887863	8.43034554262694	8.72718850504197	9.00374364309548	8.35658273995471	-0.0716256192379689	0.791430023136725	0.949737938863565
Merged-chr11-114892454-4	chr11	114891941	114892941	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359812, intron 2 of 7)	RLTR12B2|LTR|ERVK	2400.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.45935987856722	6.62339483734251	6.51775308086085	6.54072541986815	6.71911081034894	6.62828669150212	0.156088247593218	0.550477635398327	0.860709619458349
Merged-chr5-135772074-2	chr5	135771574	135772574	+	780.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	6227.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	4.26094725207323	4.17945096459151	4.66413650436706	4.51307750059184	4.4923903538798	4.02119569541907	-0.0191733464636131	0.969542002009157	0.993175393991947
Merged-chr16-32130357-4	chr16	32129873	32130873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30571.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	6.49834666589654	6.3490646251472	6.4597453696274	6.50338836145787	6.55179047453816	6.53682208948726	0.154691307322253	0.555171563799291	0.863184776736198
Merged-chr6-55017760-4	chr6	55017175	55018175	+	862.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20326.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	4.27956793337742	4.22547184780916	4.14445422573754	4.02098516726084	3.59952821079944	4.02312284081113	-0.990832181145013	0.0579925419141172	0.311118209386838
Merged-chr14-66261163-3	chr14	66260673	66261673	+	692.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	19879.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.72446263368186	3.63186101375538	3.72597024542153	3.77391669384413	3.619715610701	3.94193287802744	0.275488631140415	0.610769917977772	0.885798953080621
Merged-chr17-47630933-2	chr17	47630433	47631433	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 1 of 6)	intron (NM_198421, intron 1 of 6)	243.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	2.80171399371455	2.91258341986723	3.18695098899736	2.926579388265	2.74569672339059	2.92365739107755	-0.524348730295175	0.466117114666903	0.817366049302902
Merged-chr12-8347833-4	chr12	8347319	8348319	+	790.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34386.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.85740715155766	3.86585652144844	3.63214298055162	3.75127639994701	3.61187881190101	3.80943476738688	-0.248036537266056	0.646115731980574	0.900928341097288
Merged-chr17-50170096-4	chr17	50169618	50170618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	20379.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.82627963139206	3.53972306766367	3.45276890595953	3.7977503666084	3.57892147744892	3.84851149654292	0.399439804659536	0.487935574472961	0.828749012190382
Merged-chr2-166021244-4	chr2	166020732	166021732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	28595.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.15621055038273	6.21125946048272	6.34722582741603	6.03895984202691	6.16471132855109	6.12722718176724	-0.20556017050881	0.466075882940241	0.817324750104145
Merged-chr1-23380200-4	chr1	23379665	23380665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	3010.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	6.07831136805847	6.32465972087516	5.9594713613399	6.09041732492989	5.98858658555815	6.1125463223473	-0.13464497875106	0.650427179786367	0.902613484298836
Merged-chr2-167007788-4	chr2	167007296	167008296	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7517.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	6.82097519281681	6.84907181601856	6.01990687134744	6.23901414738887	6.47873411584099	5.95186645807521	-0.608357443128926	0.0862991106294693	0.3891526548233
Merged-chr1-138262570-4	chr1	138262063	138263063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-11175.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.69576381286266	5.18222904769472	5.46681483172775	5.60510202640097	5.40689836075587	5.74426952636079	0.223376914020233	0.534683091823108	0.853068627162717
Merged-chr6-30896646-7	chr6	30896064	30897064	+	997.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054073)	TTS (NM_054073)	230.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	6.23789117728173	5.96135119932461	6.25943201952109	6.30119385752793	6.05118089702629	6.04375652542313	-0.0272375812682188	0.927196854943959	0.983584626679457
Merged-chr1-166408549-2	chr1	166408049	166409049	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142948, intron 1 of 4)	intron (NM_001142948, intron 1 of 4)	1279.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	2.44050224952044	2.47143512782889	2.50199502881973	2.50217594925281	2.36751296986625	2.75502325513175	0.447156783964174	0.580591220529599	1
Merged-chr5-105594766-4	chr5	105594274	105595274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75303.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.39181909391114	7.30214686424851	6.76712877623302	7.22972366581224	7.4581443411792	6.90661152024058	0.0524710920208132	0.860228099741354	0.967441103100897
Merged-chr3-117868305-3	chr3	117867814	117868814	+	834.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190156, intron 1 of 7)	intron (NM_001190156, intron 1 of 7)	622.0	NM_001190156	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	4.321310897001	4.3632901305662	4.20954830714697	4.13577962001138	4.22099372581896	4.40981978640577	-0.135650208988733	0.767655946955754	0.942671231130219
Merged-chr12-4198307-2	chr12	4197807	4198807	+	775.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 7 of 21)	exon (NM_138305, exon 7 of 21)	35658.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	6.75784945581192	7.00377785311353	6.76771649848246	5.94435303488394	6.07186994115875	6.22974969757494	-1.25253350656026	6.11726482721251e-06	0.000263324041253336
Merged-chr16-18733318-4	chr16	18732846	18733846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43501.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	5.96722638896099	5.81296294477326	5.60338961112155	5.49458212475055	5.43355681639536	4.75072757345983	-0.988382621594209	0.0151206473356526	0.133435022113159
Merged-chr7-88286324-2	chr7	88285824	88286824	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	RSINE1|SINE|B4	8239.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.57565889800977	5.60191483498343	5.73631560771628	5.98320474007395	5.76222209739596	6.01107392486804	0.509768628516296	0.10208761665747	0.426069687497354
Merged-chr8-66394375-4	chr8	66393871	66394871	+	912.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	8070.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.4989565820527	4.81896172468972	4.70405728568973	4.8589683961773	4.83836997553191	4.91994245975208	0.430947799377848	0.28461362217565	0.682326259254607
Merged-chr5-124442513-6	chr5	124441829	124442829	+	795.886108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	2399.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	3.97252220324778	4.03024116184737	3.94528711034898	4.08019833802206	3.87422548146055	4.33017058926672	0.326917774455456	0.519133088467383	0.845629761325035
Merged-chr12-31997977-2	chr12	31997480	31998480	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-47735.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	2.61207708276836	2.60606443522041	2.83077960872521	2.81903255591819	2.46716783556408	2.72249856039701	-0.0423036118553662	0.956675745128613	0.989887454023164
Merged-chr10-94372883-4	chr10	94372372	94373372	+	956.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60923.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.17480233789912	6.86697877636691	6.45951933099484	6.7191848148479	6.90284430008685	6.41961537161466	-0.266562816091111	0.395016713983703	0.772579826044138
Merged-chr3-51636817-4	chr3	51636339	51637339	+	860.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24340.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.96364300319647	4.52543566424482	4.47774958548268	4.7858262949994	4.49887114785207	4.86734804448904	0.0836525886516838	0.851423596484027	0.965220310573141
Merged-chr8-80969667-4	chr8	80969187	80970187	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	45219.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.14906163494189	4.37665393272295	4.68114605841252	4.38655976501921	4.10447136190741	4.2648597282187	-0.414907374961207	0.38933899825851	0.769015431167891
Merged-chr18-49982016-4	chr18	49981507	49982507	+	772.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	RLTR12E|LTR|ERVK	2580.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.17619065317922	4.37432888669831	4.21246764705203	4.12936677011675	4.35125798223788	4.03655434679767	-0.190354894527661	0.691224580589928	0.918256515929559
Merged-chr13-33959986-3	chr13	33959484	33960484	+	934.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040707, exon 5 of 5)	non-coding (NR_040707, exon 5 of 5)	-4675.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	3.79088347064632	4.00489578438365	4.17525894612544	3.69546643173644	3.76111011985647	4.36225270623159	-0.0842194732222197	0.882140267260779	0.973028889996157
Merged-chr2-68867357-4	chr2	68866842	68867842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	5901.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.43023119344222	4.48692826170079	4.50020331654235	4.69035235194482	4.78619923918273	5.01291617255457	0.851991308788367	0.0399163486146745	0.248623365186753
Merged-chr8-88633587-4	chr8	88633076	88634076	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	2552.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	4.20819230140419	4.16013239380549	4.23006617207072	5.568048610137	5.46512244505117	5.27723192466942	2.9282259266801	6.31165537701086e-12	1.07179636859249e-09
Merged-chr17-35807005-2	chr17	35806505	35807505	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-14708.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	3.10510634501617	3.16281111529773	2.97140012012193	3.1038095036316	3.22630708380678	3.28151527634489	0.504880917937587	0.439020819836866	0.800937323779458
Merged-chr2-24572155-4	chr2	24571644	24572644	+	806.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96545.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	3.00806411578002	3.01111327346084	3.07653586462938	2.92753190050314	2.72718418762654	3.0912768287606	-0.545779894889628	0.436992657923406	0.799746735593427
Merged-chr9-51044844-4	chr9	51044335	51045335	+	900.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	32259.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	3.39707049471887	3.20204779601726	3.34297384219289	3.13992735727318	3.13917771193354	3.61362122651015	-0.0259697213685596	0.968286580005657	0.992749253886362
Merged-chr6-42397431-4	chr6	42396924	42397924	+	947.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2814.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	6.40158419327044	6.26649979074415	5.94537769544722	5.96872505287494	6.12224455044683	5.9826254148296	-0.336669400351139	0.266287448929522	0.664106403624495
Merged-chr2-152113058-2	chr2	152112558	152113558	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7534.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	2.2100044425116	2.17810076336396	2.38314141318302	2.16780216373105	2.22617200138289	2.19914694438326	-0.399292162491479	0.645108051613567	1
Merged-chr6-136548566-3	chr6	136548064	136549064	+	735.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	29713.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	5.40173445782785	5.36095067016327	5.03235188798711	4.90127090701689	4.75091318427345	4.98910123952047	-0.885653672682799	0.01976475137133	0.160197295159325
Merged-chr2-52943878-4	chr2	52943386	52944386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	86018.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.46174420173405	7.15708728149622	6.94661178388486	7.16420724711077	6.88432243954203	6.65262040467596	-0.438400077662304	0.125512502874619	0.474107696531294
Merged-chr19-6189535-2	chr19	6189035	6190035	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165919, intron 1 of 10)	intron (NM_001165919, intron 1 of 10)	5125.0	NM_001165919	622554.0	Mm.159757	NM_001165919	ENSMUSG00000024786	Majin	1700123I01Rik	membrane anchored junction protein	protein-coding	5.08883659899755	5.25162822261683	4.78756653047468	4.97189431222899	4.99076349741427	4.77199797880286	-0.314220081533538	0.427867053506405	0.79474992357457
Merged-chr3-121571691-4	chr3	121571189	121572189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39345.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	5.21825671844342	5.27098235314674	5.39565022946749	5.67830925123142	5.9871799177352	5.42860351024232	0.839314538294358	0.0168572474413484	0.144098812934017
Merged-chr7-99101212-3	chr7	99100738	99101738	+	883.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39906.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.35335960641657	4.74355302242688	4.84623768087287	5.63304613901235	5.06410984579668	5.27453874115264	0.665072120903315	0.120188592882055	0.463637108786743
Merged-chr2-102532315-3	chr2	102531819	102532819	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17702.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	2.43155614582703	2.52833394982334	2.5753572941657	2.96447419858365	3.06104388954789	2.97029641411841	2.9806568970128	0.000497025306815742	0.0104514737754673
Merged-chr1-36573987-4	chr1	36573515	36574515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-15634.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	6.27070406319714	6.45553443294089	6.8701457702615	6.60972096974174	6.76544799853517	6.77260367316547	0.274328371099678	0.347575139997928	0.735652974422286
Merged-chr16-23987425-5	chr16	23986931	23987931	+	991.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	1421.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	6.01474387499397	6.27221283774443	6.46430602367802	6.23553882907425	5.60566582023573	6.17190558888529	-0.392512141553212	0.250788314518615	0.648153521953385
Merged-chr5-122833117-2	chr5	122832617	122833617	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-11775.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	2.88985578735064	3.17405931863056	3.01983731930491	3.17133717356524	3.32878301398469	3.1537892110622	0.816775691389414	0.223732782987857	0.618510481017847
Merged-chr19-34553660-4	chr19	34553152	34554152	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	MLT2F|LTR|ERVL	2564.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	6.92995996789511	6.97078923658489	6.83162916183503	7.23724581666053	7.85891793361225	7.23276995498434	0.859029261079373	0.00254405438341372	0.0372111845057907
Merged-chr13-40939226-4	chr13	40938720	40939720	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	21586.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	5.50798378008447	5.37753718422898	5.20996955518366	5.10350783227588	4.86956619173167	4.50315373172311	-1.07653602258481	0.00867737444559061	0.0912687362999246
Merged-chr17-17878674-4	chr17	17878170	17879170	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	L1_Mus4|LINE|L1	5269.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	5.83010840744954	5.66543629343194	5.82190304562189	5.83946683430874	5.99076259135819	5.95513517330702	0.285298581906059	0.345254699812603	0.733669653925664
Merged-chr10-99081746-4	chr10	99081230	99082230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25352.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	4.57019941131279	4.60255532446142	4.54462705953796	5.29697787163129	5.19884024993307	5.01497654170617	1.34859086364599	0.000541192862913961	0.011164617150711
Merged-chr11-97988932-4	chr11	97988422	97989422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152188)	TTS (NR_152188)	-2476.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	7.37003290741886	7.61273884944103	7.31420523342379	7.33103659702967	7.72163852505487	7.30183863675366	0.0470270199290303	0.855541520258617	0.966242264237245
Merged-chr8-39005853-4	chr8	39005339	39006339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030254)	promoter-TSS (NM_030254)	-6.0	NM_030254	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	5.40496953698208	5.56207405482113	5.54024090052315	5.20849221711266	5.1552718167805	5.17863203820238	-0.644618484905045	0.0580486331596742	0.311318766867559
Merged-chr18-4922162-3	chr18	4921706	4922706	+	926.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	109720.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.40917963755508	5.81896212301136	5.61947703034932	5.40853393778303	5.33389360144661	5.36230212490783	-0.500470268069276	0.143280938918498	0.505345895453137
Merged-chr1-88635783-4	chr1	88635278	88636278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66413.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	5.79534517819236	5.5209104339078	5.69343941396272	5.99254322788856	5.78747318778278	5.67419281234496	0.283192348286139	0.378380883431402	0.760803144976442
Merged-chr1-131095812-4	chr1	131095295	131096295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2048.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.34045261491734	7.38040696636051	7.43796688121631	7.84977457067228	7.74446569905672	7.54610762684996	0.494986023512677	0.0302653898965231	0.210136706433704
Merged-chr1-165739278-4	chr1	165738688	165739688	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24570.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	3.42042120024999	3.36159363120008	3.45783422186873	3.53501977039755	3.36282712561258	3.5815940981181	0.296400715703661	0.611286584794896	0.886007771523372
Merged-chr1-83747638-4	chr1	83747142	83748142	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-339442.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	4.36358263246833	4.68534280573264	4.64241233383682	4.6401069919904	4.66210102531691	4.66895250051537	0.209601684519378	0.618807592605862	0.889515655407396
Merged-chr17-45686941-4	chr17	45686430	45687430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	581.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	7.52239908750169	7.32767835502756	7.01186825988031	7.66336033816286	7.74684850884855	7.23170912617779	0.384071483088112	0.164317111646324	0.538732740685896
Merged-chr10-77566899-4	chr10	77566425	77567425	+	810.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14730.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	3.808042054768	3.74250806661404	3.85493818113946	4.13689862485453	4.29515971795753	4.07578954354493	1.14588510108464	0.021582889080084	0.169918538610619
Merged-chr4-7313380-3	chr4	7312884	7313884	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247304.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	2.75161504672852	3.04803355053707	3.06300108515924	2.77306045040301	2.88539992628825	2.84169661422426	-0.612796672277861	0.396086487856782	0.773332291042782
Merged-chr10-115372363-1	chr10	115371863	115372863	+	668.0	f0_c57.idr	3' UTR (NM_025780, exon 3 of 3)	3' UTR (NM_025780, exon 3 of 3)	-9862.0	NM_001359472	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	2.72921534312521	3.08687730805094	2.64321800974015	2.9656552247083	3.01277452430601	3.03918403742488	0.779292920337695	0.312128912246915	0.706980142918154
Merged-chr2-153291899-3	chr2	153291424	153292424	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	508.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	6.7178778807635	7.19769471189095	6.35655684385858	6.8647279326447	6.85601189072895	6.51737326024603	-0.0865468336023994	0.789123186565475	0.949110492725565
Merged-chr19-5714245-4	chr19	5713753	5714753	+	831.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9782.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	5.8651127749292	5.27887990318663	5.96573714118154	5.89793424007791	5.8225629928357	6.02632350533932	0.329179175359262	0.352587263301461	0.740194084833795
Merged-chr5-134230272-2	chr5	134229772	134230772	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	-647.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	6.66218411864101	6.79528203509124	6.84206643839186	6.7553369363693	7.11601609737083	6.64827772558965	0.159816801156362	0.559926740918406	0.865168019835518
Merged-chr1-87639972-4	chr1	87639471	87640471	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	19659.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	8.20532753148561	8.21789091786317	7.71623402656324	7.64591376755605	8.02011763116017	7.90117605820191	-0.293717980157102	0.251699632614105	0.649173703610206
Merged-chr12-17701511-1	chr12	17701011	17702011	+	666.0	f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	10702.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.73319583491538	3.64144518250554	4.0918204675002	4.58353788445485	4.51394144883656	4.51197803939915	2.07387234370426	4.11762215709108e-05	0.00134150001741282
Merged-chr16-18249921-2	chr16	18249421	18250421	+	998.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 2 of 12)	exon (NM_001080999, exon 2 of 12)	1038.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	6.51514783309602	6.97028766361124	7.092758296937	6.75280643362583	6.82474704848102	6.94642818940291	-0.0560880508216284	0.842761624695637	0.963161613177542
Merged-chr7-30423996-1	chr7	30423496	30424496	+	708.0	f1_c57bl6.idr	intron (NM_172142, intron 2 of 10)	intron (NM_172142, intron 2 of 10)	721.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	3.85828376293187	4.06992515297531	4.00106425329281	3.90450524066769	3.91541249917067	4.11522023623895	-0.0118350832852893	0.981187427866393	0.995687678606673
Merged-chr5-30913198-2	chr5	30912698	30913698	+	843.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133918)	promoter-TSS (NM_133918)	-588.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	3.08363166502784	2.96667142708458	3.53791512605519	3.47198293819283	3.62248686257906	3.80220946570129	1.65014905283144	0.0152174982088244	0.134048019369031
Merged-chr5-137652632-3	chr5	137652130	137653130	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 11 of 12)	intron (NM_001303271, intron 11 of 12)	-6916.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	1.85264075532876	1.82107445157889	2.01740418644165	1.68729424381049	1.5746751346366	1.89449914272232	-1.70366300143054	0.134271833717014	1
Merged-chr11-120149998-3	chr11	120149495	120150495	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	1356.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	5.50193406911239	4.86806266819219	4.71361635029734	5.52395975876903	5.21795828003766	5.0691330137538	0.403874144824349	0.360449902463187	0.746659056056839
Merged-chr5-117420509-2	chr5	117420018	117421018	+	800.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	6516.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.31792094768427	3.56821477384122	3.57462144791006	3.98885715258964	3.77926363908234	3.85546965905906	1.32204764196381	0.019515269831281	0.15884099146844
Merged-chr16-23234308-2	chr16	23233808	23234808	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8287.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.35635177527351	5.47882874741364	5.39381988494301	5.29141927889925	5.51185430005007	5.23376464149846	-0.0964063399026124	0.779278719797043	0.945710994231145
Merged-chr1-95623990-2	chr1	95623490	95624490	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43604.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.01065375764879	6.09071188167957	5.20688483583705	5.75381448039468	5.93505529653972	5.38438244069776	-0.211356914352446	0.602866969252517	0.882397657327329
Merged-chr19-46864276-4	chr19	46863774	46864774	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98077.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	5.80292378628455	6.17635312234602	6.0929986097701	5.66643677582355	5.38190236905468	4.99516248845547	-1.17878675497626	0.00152103075160461	0.0249629046902399
Merged-chr5-28069370-2	chr5	28068870	28069870	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2042.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	2.30584297427133	2.49872054129721	2.53226245387044	2.79148955629808	2.39036807812499	2.73272926653846	1.16143493102895	0.166172159517159	1
Merged-chr9-111288509-2	chr9	111288010	111289010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16665.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	3.70934935911332	4.03362900556882	3.90052318853143	3.93867670520303	3.76827101979681	4.51720403826438	0.637017016693938	0.262505363292292	0.660494292979287
Merged-chr1-160196840-2	chr1	160196340	160197340	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347121, intron 1 of 2)	RSINE1|SINE|B4	1508.0	NM_001347121	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	2.10585752721235	2.23442789302479	2.45073490678198	2.37602813460713	2.16283376842391	2.46281526281579	0.455768951438426	0.607517198370345	1
Merged-chr12-100188762-2	chr12	100188262	100189262	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045282, intron 1 of 2)	intron (NR_045282, intron 1 of 2)	794.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	4.33315366037371	4.04885168816641	3.98694765549006	4.16554697730074	4.32488159351847	4.15730545717847	0.234174426338406	0.630013429255191	0.894514592311047
Merged-chr14-77034731-4	chr14	77034264	77035264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 3 of 7)	intron (NM_172488, intron 3 of 7)	1853.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	7.03326430380742	6.99657484437291	6.76818209011592	7.3148040706732	7.73210545637421	7.50581535708262	0.877257279597781	0.000638733162668635	0.0127483111056205
Merged-chr1-74434711-4	chr1	74434199	74435199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310662)	TTS (NM_001310662)	25315.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	7.01643029460371	6.71760806650805	6.57793541051063	6.55861463609931	6.67294475929227	6.58469328377224	-0.288088513641242	0.290523967978321	0.688343014537433
Merged-chr12-16882668-3	chr12	16882152	16883152	+	826.766663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12326.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.91892161270979	8.14012447872595	7.9860444818369	7.75865910593661	8.07727307122261	8.02755994926778	-0.0804067411923712	0.723906706706551	0.929178878081464
Merged-chr8-14873197-4	chr8	14872704	14873704	+	917.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15332.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.51805087201473	4.63513677586106	4.27550936560803	4.51368050773218	4.42894811888078	4.29692406350904	-0.187511070778769	0.675397482268994	0.912152821313949
Merged-chr13-41597668-3	chr13	41597171	41598171	+	795.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-8545.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.57130251683669	4.99166273893627	5.13761217031142	4.70180541566273	4.91110480812411	5.16989050782325	0.0441036300760319	0.917835329258409	0.981747877135909
Merged-chr7-127119817-2	chr7	127119317	127120317	+	620.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2212.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	5.16447311168933	5.28985091462299	5.27445202412559	5.68700240405081	5.72850255629348	5.55219766253507	0.811080040052439	0.014140861333456	0.127686683649941
Merged-chr7-135914125-1	chr7	135913625	135914625	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-197746.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.72165607928628	5.21328809722991	5.45183020042029	5.00164147173724	5.08640305633919	4.99088228059026	-0.263131987778227	0.523515713198223	0.848259993842575
Merged-chr18-37908281-4	chr18	37907768	37908768	+	938.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	27208.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	2.85208105069094	2.8006566169017	2.87885811440771	2.73848618948309	2.5812211898166	2.5730898521619	-1.14655772145998	0.129497505396449	1
Merged-chr4-6372398-4	chr4	6371862	6372862	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	L1MB5|LINE|L1	6682.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.75463873880336	7.95866165120879	7.59682719133034	7.89873810886663	8.09740783307823	7.23318276016832	0.0321740496442388	0.913185170244244	0.980560320145079
Merged-chr3-96293510-3	chr3	96292987	96293987	+	948.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	482.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	6.70387226435833	7.03789505464976	7.0650969476051	7.32964595846345	7.45197156064338	7.08390650171775	0.54683209438531	0.037397356415342	0.238888318179624
Merged-chr3-142272701-4	chr3	142272137	142273137	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 8 of 12)	PB1D11|SINE|Alu	-103212.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	4.48823706063198	4.53830714584576	4.49176151478465	5.23923074845943	5.49814443054628	5.47917588473397	1.97779568353087	4.01814393382377e-07	2.43157614869533e-05
Merged-chr9-89222567-2	chr9	89222067	89223067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	B1F1|SINE|Alu	11183.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.39083782224891	5.51962617965021	5.25200241836422	4.68837390058337	4.3525781015467	4.82696614122712	-1.70695561406269	2.19417624592333e-05	0.000789675679371923
Merged-chr16-75962198-4	chr16	75961701	75962701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38583.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	6.34420731580134	6.19617812717881	6.36946283395751	6.44881688389548	6.48034168657473	6.55374005065044	0.312680602884595	0.24372275957407	0.64086208327192
Merged-chr11-106276622-4	chr11	106276109	106277109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029467)	promoter-TSS (NM_029467)	-63.0	NM_029467	75870.0	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	4.06115810739829	3.80114438795778	3.88894936045371	4.36050697032656	3.74001148245548	3.90792554474593	0.320822741130665	0.560212963768656	0.865187357612257
Merged-chr10-98878032-4	chr10	98877513	98878513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36629.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.18307042721545	6.80091168759522	6.71735749972215	6.95653379657436	7.05857372622139	6.77631282418743	0.0272797301285238	0.920935805413987	0.982463724790289
Merged-chr17-40873694-4	chr17	40873174	40874174	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6884.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	3.71181793969865	3.88891359674336	4.10298516324324	4.30538379315201	4.49584232391215	4.664557467405	1.66344338610466	0.000837988342491061	0.0156796343606917
Merged-chr2-79428875-4	chr2	79428375	79429375	+	851.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001048176, exon 1 of 13)	exon (NM_001048176, exon 1 of 13)	113.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	2.88889676614929	2.54041053482585	2.82987624545322	2.84848095573665	2.72250238573365	3.07689563952064	0.624332709804255	0.413746250391134	0.785359020041643
Merged-chr8-69089967-4	chr8	69089462	69090462	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-740.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	7.37488159009527	7.67419632125278	7.05724326036113	7.69779480518523	8.08854644747197	7.37209406900593	0.522771261808674	0.081540245651656	0.377688753071866
Merged-chr2-71939107-4	chr2	71938598	71939598	+	819.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42117.0	NM_001204167	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	4.08438317000568	4.26885576257519	4.02270854269259	4.52881620649115	4.51209328270591	4.38332823779572	0.909641861814327	0.0487216563049739	0.280226140721937
Merged-chr13-23437088-2	chr13	23436588	23437588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6071.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	4.85472118650731	4.63518750670111	4.67290547082917	4.85797234360294	5.05137620018883	5.07197398851619	0.600591442045214	0.126207976022447	0.475052622314112
Merged-chr9-57525787-4	chr9	57525293	57526293	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	4561.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.06792198987717	5.74104993077784	5.43152856928593	5.45461303492882	5.76118733312116	5.58172167783939	0.303696167964356	0.420623452556651	0.789800880993226
Merged-chr4-128611859-2	chr4	128611340	128612340	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1742.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	3.77456689284842	3.74369760599724	3.65014800598577	3.47391647479462	3.55426394641821	3.61383599129284	-0.632731687841099	0.252172320090954	0.64970951645701
Merged-chr14-105285403-3	chr14	105284893	105285893	+	886.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	Lx8|LINE|L1	26720.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.74492209202089	3.83841226405071	3.72421609747637	3.98404854330998	3.64380961698697	3.8972044608116	0.228915880655211	0.669346506311053	0.909615408611738
Merged-chr12-80114539-4	chr12	80114054	80115054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1541.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.85636811602919	7.60546807245289	7.47723183830353	7.93199449170677	8.06479502703054	7.81770026432106	0.407541835611244	0.0846931560090023	0.385394912984962
Merged-chr19-43671347-1	chr19	43670847	43671847	+	560.0	f1_balb.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	3534.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	4.06496397131032	4.12946727711906	4.05478001864534	4.26216008184246	4.44458989450214	4.67444966517415	1.01929004380516	0.0301428404157841	0.209569306928189
Merged-chr14-21742781-2	chr14	21742281	21743281	+	994.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013849)	promoter-TSS (NM_013849)	98.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	2.10132763929872	1.95696623862112	2.18663227194103	2.19672953990375	2.03605059315718	2.38980314821718	0.935685829598453	0.313363265549239	1
Merged-chr14-51063916-4	chr14	51063436	51064436	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-CTY|tRNA|tRNA	-6694.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	7.0465934271766	7.18311923274119	7.10773102567445	7.26177575784611	7.56732575771497	7.21540840575823	0.37668697329084	0.127783030054577	0.477975741280343
Merged-chr15-62106707-4	chr15	62106194	62107194	+	973.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	67437.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.5147917830276	3.35522847313944	3.36833920627372	3.06846445365052	3.29970596060039	3.01847784753697	-1.11308854831376	0.0954252080031931	0.41176583423475
Merged-chr17-5800330-1	chr17	5799830	5800830	+	1000.0	f0_balb.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	840.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.11831128414667	6.18427790252392	6.16184888152222	6.40906101332357	6.31229094991905	6.26394524411882	0.294975900994688	0.282534888722839	0.680451612659422
Merged-chr16-21205240-1	chr16	21204740	21205740	+	884.3333130000001	f0_balb.idr	exon (NM_010143, exon 1 of 16)	exon (NM_010143, exon 1 of 16)	445.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	3.98282780285093	3.79655872084383	3.77659174865017	4.00089270361044	3.85102125352338	3.84735060409451	0.133080617455238	0.796711487814183	0.951484355174064
Merged-chr19-4283890-4	chr19	4283396	4284396	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-759.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	5.57971012994212	5.1206300307725	5.56123544999747	5.60517070290303	5.31767623148451	5.7013407890794	0.210541203549033	0.564584983610561	0.86649674111457
Merged-chr16-91764201-3	chr16	91763708	91764708	+	845.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	34837.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.50788250948848	4.51607047514914	4.46364832235088	4.56240167089457	4.10650502917419	4.21229584400757	-0.489490816450955	0.290224136844981	0.687887255130097
Merged-chr11-54957151-4	chr11	54956652	54957652	+	881.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	5788.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	5.57825226926382	5.52138202017367	5.0453720851951	5.36244023898941	5.21853452358793	5.41609943043314	-0.171976444153011	0.639988689071355	0.898255496259518
Merged-chr16-85114098-4	chr16	85113600	85114600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	MLT1A|LTR|ERVL-MaLR	59607.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.09849744840339	6.97385219926432	6.97538258182731	6.9770121304817	7.02171390316642	6.79901909595838	-0.115670383346182	0.637812649053156	0.8973803061326
Merged-chr9-50601823-3	chr9	50601323	50602323	+	669.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025848, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2026.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	5.3476425190589	5.38876744047026	5.59746164366086	5.36720203670965	5.28172980851476	5.70946837972203	0.022020692069508	0.950073489009842	0.988400419899929
Merged-chr2-156179627-4	chr2	156179128	156180128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291115)	promoter-TSS (NM_001291115)	-48.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	9.07546554856542	9.21701153421504	8.70108302128419	8.78400362732552	9.00987698161684	8.68184088583216	-0.252496714269313	0.285813613516712	0.683252769658361
Merged-chr2-122381130-4	chr2	122380615	122381615	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12197.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	3.60516362974474	3.61772515497529	3.78203199754965	3.66038950318707	3.80924905100973	3.589668236117	0.106904362769946	0.845717169561746	0.96385971927973
Merged-chr3-10289874-2	chr3	10289374	10290374	+	603.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	11309.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.21856571705604	3.97898492812068	3.98713778870728	3.77887164953665	3.82523432923774	3.95823636173422	-0.664636546602192	0.191257556738983	0.577843643976488
Merged-chr4-132977009-4	chr4	132976515	132977515	+	983.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	2920.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.95300048325033	5.58729311971502	6.00869033982204	6.00845151558289	6.06366870917914	6.36552839492247	0.506740950670101	0.113948207673751	0.450859089500984
Merged-chr10-41891516-1	chr10	41891016	41892016	+	764.0	f0_balb.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	4077.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.07950441508487	5.1010684271689	5.36104320192278	5.15238260044451	4.78888327615948	5.14995799751964	-0.308844930425773	0.421398009154785	0.790262902892303
Merged-chr8-122985502-3	chr8	122985011	122986011	+	593.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	56773.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.7861763810862	4.77934869838074	4.341960425778	4.32562975236593	4.20978450747677	4.41113461391214	-0.886401532771948	0.0503162694201654	0.285432220696395
Merged-chr9-65522877-4	chr9	65522310	65523310	+	743.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57277.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	2.84141669465489	2.91705664042974	2.72151523891815	2.97317287866213	2.97636707105015	3.10289549068054	0.875404098794965	0.215603244771225	0.609020429470892
Merged-chr10-94223857-3	chr10	94223353	94224353	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	2.53265962194878	2.42672821084516	2.51460417555338	2.18619051314569	2.19934982414069	2.39858901986445	-1.60631233592911	0.0679284588545567	1
Merged-chr2-4450060-4	chr2	4449543	4450543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	49067.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.19506014388475	5.96034884373083	5.81781952794914	6.37080695841975	6.53733117817136	5.82594340946844	0.481424119035514	0.153816285121407	0.522888648624506
Merged-chr16-14123372-3	chr16	14122907	14123907	+	844.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	35867.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.06023266309036	4.79739142316714	5.24964264795699	4.8361597459354	4.84019411213808	5.25322478276106	-0.128168056953725	0.752511492111507	0.93828054640501
Merged-chr13-24487171-2	chr13	24486671	24487671	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72049.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	2.31055001499554	2.27698631345712	2.55144183384056	2.21649111354674	2.29722564439209	2.44099723528639	-0.401157981716918	0.63713085462745	1
Merged-chr5-122396999-2	chr5	122396499	122397499	+	895.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	5121.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	5.14409665972356	5.0928770739012	5.40883299887795	4.96264790621516	5.04870476760036	5.20476792840373	-0.295506848423403	0.423440310575282	0.792033749856087
Merged-chr5-149678370-4	chr5	149677860	149678860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081204, exon 1 of 15)	exon (NM_001081204, exon 1 of 15)	103.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	6.17670570868344	5.70764740903176	5.8491992182246	6.41806022171318	5.22238624954525	5.45424869723359	-0.184564462333935	0.787759257940495	0.94877064431094
Merged-chr1-64197852-4	chr1	64197340	64198340	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76451.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.93380510597677	5.97890454004425	6.1606467646045	5.6834749540727	6.27441865381177	6.27941088677817	0.149191836468687	0.650660905474785	0.90265185343381
Merged-chr10-37191080-2	chr10	37190580	37191580	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-52154.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.37027920369351	5.43448182768849	5.40871374958436	5.04454739813827	5.55893049545853	5.2863232974348	-0.154181323471015	0.671937190240627	0.910713932198691
Merged-chr2-104123259-1	chr2	104122759	104123759	+	1000.0	f1_c57bl6.idr	exon (NM_026634, exon 1 of 2)	exon (NM_026634, exon 1 of 2)	490.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	2.78298677928126	2.67595123093645	2.75103064367202	2.77210173623509	2.53885419486175	2.82424091382831	-0.13205273257715	0.860085023641445	0.967441103100897
Merged-chr11-69667606-2	chr11	69667106	69668106	+	688.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_144958, exon 11 of 11)	exon (NM_144958, exon 11 of 11)	-1436.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	4.94157199889858	4.98547932835658	5.19713822106785	5.0524848518363	5.13346413974946	5.46285992264562	0.375868905387992	0.318811231077192	0.712819123861698
Merged-chr19-12587457-1	chr19	12586957	12587957	+	549.0	f1_balb.idr	exon (NM_001346545, exon 3 of 3)	exon (NM_001346545, exon 3 of 3)	9109.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	3.34551958164969	3.28807906908297	3.26204163479934	3.49206741577641	3.31245629172306	3.39181909999285	0.384882257542205	0.522007789709307	0.847400826543341
Merged-chr13-52100245-4	chr13	52099773	52100773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	3532.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.9066847991845	4.96959419112096	4.7430185543943	5.03434305283973	4.42516369537918	4.5556785075606	-0.411119554445893	0.350495596925873	0.738517032894607
Merged-chr2-164067284-3	chr2	164066807	164067807	+	930.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	3795.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	5.06270764735662	4.85092764588045	4.80767816258844	5.0366590286605	5.11899745475535	5.1936693501222	0.42191163826944	0.261819475623189	0.659646185661428
Merged-chr17-50528170-3	chr17	50527672	50528672	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	18625.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.36761320810278	5.42941609353739	5.52324169694563	5.66027844997533	5.54147826894196	5.24315129505884	0.126196912680981	0.712657609754221	0.925242852120911
Merged-chr17-74316431-4	chr17	74315978	74316978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146223)	promoter-TSS (NM_001146223)	-45.0	NM_001146223	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	6.58749089683007	6.69487012626931	6.45512645231126	6.44852303302592	6.63180831156697	6.27652075190956	-0.187017468230765	0.499992491505262	0.834889430939973
Merged-chr5-66088454-4	chr5	66087954	66088954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9725.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.81394363725648	6.48268650552249	6.58884955167319	6.97456378679343	6.91530360745713	6.77933871720765	0.401912526472432	0.127393584363788	0.47713250153821
Merged-chr16-91769339-2	chr16	91768839	91769839	+	784.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	39968.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.06611302417643	3.92104989958412	4.09071677314608	4.04684254357107	3.85285020858657	4.24676263147179	0.0677878265011162	0.892868960294961	0.975146620821922
Merged-chr15-12668010-3	chr15	12667500	12668500	+	697.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75444.0	NM_001081064	68070.0	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	3.11063166951783	3.22175128324536	3.30226330431596	2.79732215088641	2.7393456018291	2.78459060758736	-2.24822652909106	0.00253661218577849	0.0371496734556618
Merged-chr11-100822586-4	chr11	100822086	100823086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011489)	promoter-TSS (NM_011489)	-16.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	7.34147177543145	7.39978979323944	7.28435387893473	7.24266881043644	7.45822463559977	7.21135018575126	-0.0432790466394478	0.854212712778896	0.965960851905444
Merged-chr13-51849708-2	chr13	51849208	51850208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3033.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	6.07552542009403	6.07516529894252	6.08188539265476	6.0639198850429	5.79268283345508	6.28373796822907	-0.0496599541474224	0.871495156923068	0.970222087171093
Merged-chr11-31671937-4	chr11	31671432	31672432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024919)	promoter-TSS (NM_001024919)	-70.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	6.63437768104252	6.2300719690218	6.11848260090576	6.57459561116966	6.25951729570029	5.639435434227	-0.212151127978839	0.565788020696359	0.86688237163883
Merged-chr7-92975501-4	chr7	92974994	92975994	+	912.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100241.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	2.60054062166036	2.56278000482275	2.87170472786563	2.629688452372	2.65524027180904	2.64408508740571	-0.196159474966718	0.796678189482453	1
Merged-chr1-64121721-4	chr1	64121236	64122236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-347.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	8.86384494945531	9.10584460774368	8.45034678884976	8.55870600413511	8.79571096900512	8.51122444123591	-0.288758335128569	0.249675850641887	0.646693484208875
Merged-chr5-99376600-2	chr5	99376100	99377100	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	MIRb|SINE|MIR	-123673.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.71278796671974	7.56372596038644	7.79452569677091	7.88326273102553	8.02887912171161	7.61814852048796	0.247388311484219	0.297016655146307	0.693594573456833
Merged-chr2-103010168-1	chr2	103009668	103010668	+	614.0	f1_c57bl6.idr	Intergenic	Intergenic	63345.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.03599357895983	6.15683194373772	6.49675716382424	5.95947361119661	5.91864414599016	6.21515065994588	-0.349458805951182	0.259816348979323	0.657403317052218
Merged-chr10-17691852-3	chr10	17691338	17692338	+	993.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-31390.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.75858790685798	3.66554573130476	3.80847907386734	3.68574635223795	3.68736507286048	3.67277556531956	-0.200217178780353	0.707689604981123	0.923504801393744
Merged-chr18-23875484-2	chr18	23874984	23875984	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	71514.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.90220520536884	4.58869277967797	4.40974717413479	4.53955367094129	4.42551521496564	4.60846733645705	-0.335509995898963	0.44649822486992	0.805940047181576
Merged-chr11-96975664-2	chr11	96975164	96976164	+	711.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2024.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	5.40780609361199	5.50745270068261	5.77223403676128	5.79365813659992	5.92165933607225	6.08104848268741	0.677586644456994	0.0359320398761976	0.233034542012366
Merged-chr19-4064351-2	chr19	4063852	4064852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-4905.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	7.14167003505862	7.58953393833548	7.34912355662815	6.74203605288498	7.16037158699404	7.20384200111458	-0.484464356324968	0.0795834568510477	0.37311135213331
Merged-chr13-45840041-2	chr13	45839541	45840541	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 3 of 6)	intron (NM_001199304, intron 3 of 6)	124950.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.03300558766931	4.2234427174731	4.21047909656965	3.89741949577885	3.86460289118148	3.89915453947227	-0.809157412256696	0.101675665372271	0.425436425842094
Merged-chr7-16120064-4	chr7	16119492	16120492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133727, exon 1 of 12)	exon (NM_133727, exon 1 of 12)	116.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	6.58408321005511	7.2695833335346	7.1799984328326	7.05998507476306	7.2322032640604	6.83470198996218	0.0204557466247627	0.945988317544901	0.98796006280508
Merged-chr3-82375452-4	chr3	82374969	82375969	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356457, intron 6 of 13)	intron (NM_001356457, intron 6 of 13)	17282.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	3.61161550151061	3.4743032704244	3.04023699734743	3.23278246385228	3.14346737493461	3.36194293872084	-0.621765500832824	0.357643173605886	0.744246280500086
Merged-chr13-8679385-3	chr13	8678888	8679888	+	869.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	191656.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.15507614909823	3.42475560420379	3.37431313100823	3.06590679647333	3.01647887827583	3.22447633104419	-0.953247264979811	0.142663745973299	0.504152084215843
Merged-chr2-154568424-2	chr2	154567924	154568924	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007891, intron 1 of 6)	intron (NM_007891, intron 1 of 6)	1002.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	5.6424432560583	5.66713258649486	5.57952227477291	5.50458048139833	5.47065943444718	5.55771432865176	-0.236726482275834	0.45677463468247	0.811826981708758
Merged-chr10-78144327-4	chr10	78143835	78144835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25433.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.81526582996766	4.51613219089071	4.39868595056883	4.99524425964149	4.7644271737079	4.32044290023897	0.31614522058787	0.501275684432637	0.835523069455156
Merged-chr6-72126439-2	chr6	72125939	72126939	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	-3242.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.85168770373218	5.10826956337645	5.07842861678831	5.1024203380462	5.21071510657101	5.20856377582556	0.334340966056016	0.362031457124945	0.747675323428227
Merged-chr13-106812235-4	chr13	106811695	106812695	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 30 of 30)	intron (NM_001360897, intron 30 of 30)	124763.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	4.76776412217661	4.85151823468392	4.83929911329878	4.24332394058946	4.09199640834824	4.64647184065751	-1.21128753118522	0.00755146426724379	0.0825788196542018
Merged-chr2-122377478-4	chr2	122376972	122377972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	7.35719161265775	7.69497161026017	7.31129164940886	7.2387900865795	7.64197044323215	7.16128261036191	-0.141011294010498	0.603331426718375	0.882544198306255
Merged-chr17-29767471-2	chr17	29766971	29767971	+	565.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50454.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	2.85737980772989	2.64932697457473	3.03791853514786	2.74208978790778	2.92957483435589	2.93770310611142	0.100202790242022	0.891495588737584	0.97481556123419
Merged-chr10-8520618-4	chr10	8520049	8521049	+	784.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1724.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.46849671668763	3.13895744869817	3.392062133668	3.17934754895472	3.20749473958052	3.40878467538024	-0.301005620228647	0.634240637951683	0.896306748317281
Merged-chr8-115611695-4	chr8	115611214	115612214	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95180.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.50912921536216	6.80599234395503	6.68408587413243	6.86017282202811	6.77699392667197	7.09150955882704	0.367266048726945	0.168583086408033	0.545184755223438
Merged-chr9-59762713-2	chr9	59762213	59763213	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	B1_Mur4|SINE|Alu	11539.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	4.62378303091253	4.63948357683367	4.75684166024845	4.83552877569133	4.75394108492083	4.78436885953925	0.281733981760016	0.47655407050929	0.822610387082752
Merged-chr1-9547029-2	chr1	9546529	9547529	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	-919.0	NM_175236	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	6.60211705865782	6.66451719555726	6.73217518465099	6.67354787656873	6.65373532968283	6.46932467787612	-0.08807123260374	0.733562407525303	0.932153005448542
Merged-chr17-65717709-4	chr17	65717227	65718227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 2 of 6)	intron (NM_133685, intron 2 of 6)	55025.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.170086098379	6.96306924923661	7.16209677371845	7.27506616240889	7.482525100937	7.19521056108167	0.348596381606814	0.155232990820742	0.524852771239834
Merged-chr13-107720921-2	chr13	107720421	107721421	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33524.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	2.27868395730981	2.30652933209959	2.4200665730557	2.25126787801263	2.04131253710846	2.30267358766297	-0.957377448776594	0.284925202556006	1
Merged-chr5-137045457-2	chr5	137044957	137045957	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007457, intron 1 of 4)	intron (NM_007457, intron 1 of 4)	651.0	NM_007457	11769.0	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	3.63503092144045	3.72776582781795	3.97271340773473	3.98682595455876	3.72898759780159	3.79730320908701	0.202588198785497	0.706861415972872	0.923161381966479
Merged-chr15-75842998-2	chr15	75842498	75843498	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1090.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	3.4758213522253	3.38928021477948	3.43194763829305	3.72956497929193	3.47674471927351	3.44695282236593	0.460758995092296	0.42910072605915	0.795575062143313
Merged-chr13-33001850-3	chr13	33001346	33002346	+	930.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2695.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	2.45960928124055	2.4661252679546	2.60240761793196	2.77432293858737	2.69988248631563	2.739216343088	1.34251248980079	0.0821341100759503	1
Merged-chr2-119016017-4	chr2	119015497	119016497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13396.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	5.74806901465442	5.53126253313779	5.42653011174596	5.7776879788186	5.64249695277534	5.550339427443	0.14869417371407	0.651444554685705	0.902821427486479
Merged-chr15-79446974-2	chr15	79446474	79447474	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4831.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	5.41458680640661	5.33889549218814	5.33771890682597	5.34512535439018	5.43439856746687	5.80273609917124	0.319668886365437	0.359047910128602	0.745307683821397
Merged-chr2-62681173-4	chr2	62680661	62681661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 3 of 7)	HAL1|LINE|L1	16834.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	3.55303059923252	3.33768434506664	3.02512222226594	3.36882864027181	3.33576579701918	3.67516095024747	0.518117810994563	0.446918635561804	0.806159145464037
Merged-chr6-124696018-4	chr6	124695517	124696517	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	16161.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	5.49601257338807	5.390845357836	5.0039843930162	5.50789935136361	5.36308828728082	5.35196880393687	0.160697646007565	0.657453587568291	0.904798742244684
Merged-chr2-73047190-4	chr2	73046675	73047675	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66729.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	3.31493549931895	3.04322566979423	3.30678034195871	2.95549519164376	3.1068945664463	3.03372235422214	-0.825637680305019	0.218485940119989	0.612691362412513
Merged-chr5-8917289-4	chr5	8916790	8917790	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 9 of 27)	intron (NM_008830, intron 9 of 27)	23569.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	2.45118753190221	2.31307561699852	2.30181495669328	2.53213533684713	2.36656933639197	2.63570920824932	0.948029193780781	0.255374319140877	1
Merged-chr9-106310047-4	chr9	106309519	106310519	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	28958.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	5.89512420298025	5.92891071669573	5.92123800658254	5.41003613639226	5.58076202221313	5.84140142591751	-0.547358451811554	0.0865115130277008	0.389610845205073
Merged-chr1-43939494-4	chr1	43938985	43939985	+	811.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	5491.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	4.47929223167452	4.56981653217811	4.47740427843876	4.60155929097694	4.43902286398842	4.7051387039249	0.161471311411199	0.703548243594137	0.922108924938678
Merged-chr8-79038333-3	chr8	79037848	79038848	+	829.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9911.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	4.01375156689195	3.82280866938047	4.36396834250048	3.65863757171097	3.52007915632323	3.71457405502974	-1.44598912718717	0.00997350937508268	0.100180302997093
Merged-chr11-43223723-3	chr11	43223224	43224224	+	884.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176999, intron 14 of 22)	intron (NM_176999, intron 14 of 22)	73847.0	NM_176999	319767.0	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	3.94933439715285	3.92188321067967	3.75648092102342	4.14645776860517	4.10219249813807	4.13253880744259	0.714843903589318	0.150284572687374	0.517246479850651
Merged-chr9-95681507-4	chr9	95681044	95682044	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029620, exon 5 of 9)	exon (NM_029620, exon 5 of 9)	43916.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	7.06966359950067	7.13215317544455	7.29886789983442	7.8667237702665	8.11742548556672	7.50887057575483	1.02019068420407	9.00280946125919e-05	0.00259655379428927
Merged-chr11-85691482-4	chr11	85690990	85691990	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	28254.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.53968914069737	5.80857849916228	5.5561389799356	5.65856466015493	5.37989220878278	5.20413194412909	-0.399811017946833	0.253019278137122	0.6503932065256
Merged-chr12-3739276-4	chr12	3738764	3739764	+	788.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67716.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.4899118809976	6.90556966948989	6.32218992066908	7.20154050827647	7.23726698876161	6.80554600301962	0.761337979964461	0.0113540064223705	0.109994663685249
Merged-chr13-8709277-4	chr13	8708781	8709781	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 6 of 10)	intron (NR_110345, intron 6 of 10)	161763.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.00446649738324	2.80274279631483	3.14963396897862	2.64122143631064	2.98333198805955	2.99637539592975	-0.497770982188511	0.506859479533021	0.838597859957521
Merged-chr3-121369649-4	chr3	121369149	121370149	+	995.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-56892.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	4.48247570198895	4.25584827763898	4.49825298087429	4.37214720084516	4.59731707227597	4.48149293120209	0.201185590870753	0.648022044960065	0.901652424952963
Merged-chr1-43337538-4	chr1	43337041	43338041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108210.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.09274730954915	4.83404082832548	4.55177334010363	4.82676459474245	4.84093451326072	4.66468786464501	-0.161202362559243	0.701337179954177	0.921239921536122
Merged-chr14-47259133-4	chr14	47258641	47259641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360532, intron 13 of 24)	B1_Mm|SINE|Alu	17716.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	5.89169187769314	6.05863998894957	6.1018552691752	5.72045728659304	5.84517242171595	5.91778119707647	-0.332755818267473	0.268339670444799	0.66539537782724
Merged-chr14-68612079-2	chr14	68611579	68612579	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102399, intron 17 of 21)	intron (NR_102399, intron 17 of 21)	-30007.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	2.71093408689751	2.91782390239101	3.08681835818057	2.73309001577586	2.6602552777425	2.99106154580228	-0.564247340787386	0.449802235432279	0.808012616706586
Merged-chr12-85604080-1	chr12	85603580	85604580	+	540.0	f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4062.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.39921033157606	5.13357462445506	5.13829050798677	5.46621962937019	4.9618826332417	5.09817942964717	-0.0839199704700397	0.827395994776072	0.959445425237295
Merged-chr4-132535603-4	chr4	132535100	132536100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	41.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	7.58968272742778	7.56168053311004	7.54552159799453	7.48494512479695	7.6508710556638	7.25352784488955	-0.121034664327011	0.610143696973517	0.885428451824695
Merged-chr15-90623705-4	chr15	90623204	90624204	+	957.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357979, intron 3 of 18)	intron (NM_001357979, intron 3 of 18)	55684.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.67201859335212	4.21618423900934	3.92698145756669	4.04711171141823	3.67246763184372	3.9994337673318	-1.15182519868505	0.0380406611163849	0.241422266049284
Merged-chr9-90273921-2	chr9	90273421	90274421	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3152.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.72460796883448	8.02367643106626	7.98891860368057	8.14515474546295	8.5583241246207	8.23721316711035	0.582347613817156	0.0149547949970318	0.132420834533683
Merged-chr6-85434080-4	chr6	85433589	85434589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	2113.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	6.27599325323933	6.10966469731228	6.69612438601771	6.75387848487936	7.1887882465758	6.67580954969154	0.837972762139732	0.00740876759565759	0.0814675077014231
Merged-chr19-9943238-7	chr19	9942807	9943807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37293.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.4107607772725	6.37036947356729	5.9051821352415	6.1823267384798	5.83801512030337	5.46441313467456	-0.659736528414514	0.0639082066676978	0.329410522232906
Merged-chr19-40743688-2	chr19	40743188	40744188	+	780.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83918.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.25945446192191	2.55754867942991	2.53713234349278	2.25605469171484	2.09401946177321	2.2912971018665	-1.73304458101159	0.0595162914887989	1
Merged-chr15-66730151-1	chr15	66729651	66730651	+	565.0	f1_balb.idr	intron (NM_009375, intron 27 of 47)	MLT1H|LTR|ERVL-MaLR	59381.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.52583120621719	4.64142191630095	4.92476123526939	4.40590481388883	4.25238313257639	4.59506396272447	-0.701597486665496	0.114513060608682	0.452029859743929
Merged-chr10-68141783-3	chr10	68141293	68142293	+	920.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	136933.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.41962867049254	4.49446125316435	4.42644802301388	4.20099526744678	3.83656354792214	4.27764474965678	-0.932930633028298	0.0531753267420156	0.295624546505621
Merged-chr3-89910138-4	chr3	89909640	89910640	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3056.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	5.53546658475128	5.70117200594686	5.8528977872451	5.51380057451561	5.77564160641585	5.91371647445087	0.08242012111431	0.802488507574453	0.953198534492307
Merged-chr6-35544517-4	chr6	35544022	35545022	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-4634.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.78016312643421	3.97199622740599	4.41623420609315	4.04473054705709	4.01759570206255	4.2822682828537	0.118630753319795	0.823076632439495	0.958214218900685
Merged-chr4-95196396-2	chr4	95195896	95196896	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144174.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.46819312150626	3.46068360272009	3.39592484208869	3.84195281329915	3.43197282936372	3.52622044625051	0.603001258451342	0.307800378546974	0.703862750381637
Merged-chr2-28540945-2	chr2	28540445	28541445	+	988.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 2 of 17)	intron (NM_001145836, intron 2 of 17)	7481.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	5.44485761458139	5.22348763654692	4.90237410245411	5.36466596902353	5.17671425287597	4.92954844063097	-0.0911392276555658	0.817550634293896	0.956767881392089
Merged-chr5-135706047-2	chr5	135705547	135706547	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	16902.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	4.84796896858865	4.9514795977169	5.18408866940195	4.85539557895349	4.76810051399413	5.05676316058249	-0.227277043782636	0.561593816599714	0.865450884348128
Merged-chr13-100652396-2	chr13	100651896	100652896	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015889, intron 1 of 2)	ID_B1|SINE|B4	789.0	NM_001015889	108143.0	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	5.17146888180579	4.92773834788897	4.51619993442607	5.0830984849842	5.20011038501378	4.48857294387863	0.132471789898812	0.780297031591652	0.945976443458414
Merged-chr13-20783629-2	chr13	20783129	20784129	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10484.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.23381236586502	4.15001301084169	4.26918403710228	4.39368608165265	3.95328968024965	4.00275982811497	-0.233272068100533	0.636679424787569	0.897212708358297
Merged-chr3-135616924-3	chr3	135616418	135617418	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 8 of 24)	Lx7|LINE|L1	74629.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.54616615491467	4.57222408574478	4.09763859917034	4.51548355266514	4.44013698831662	4.78036467582647	0.357765923821138	0.447265879380948	0.806316645191341
Merged-chr16-36049901-2	chr16	36049401	36050401	+	884.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_027342, exon 3 of 5)	exon (NM_027342, exon 3 of 5)	8711.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	3.57891718668331	3.73793736919839	3.64711279557168	3.32706039999502	3.31279819669155	3.76601349346369	-0.650423786697201	0.279615354185934	0.677308794244801
Merged-chr16-36704900-4	chr16	36704412	36705412	+	912.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10934.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.7658588057687	3.74297441721768	3.6369972657901	3.82394532873871	3.82928060306427	3.76178711583135	0.284678313548279	0.589388551823327	0.87684682813475
Merged-chr3-127409051-3	chr3	127408572	127409572	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327939)	promoter-TSS (NM_001327939)	-14.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.125693697776	3.12297968054942	3.13223082582074	4.01326336092766	3.93803857591114	3.89802980077685	3.37669538008309	8.60371877634298e-07	4.75364031833962e-05
Merged-chr12-4539679-4	chr12	4539195	4540195	+	922.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15582.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	3.94447155903205	4.43815356650141	4.38055248592998	3.85904641810704	4.212248925145	4.40607049505309	-0.262492193195838	0.61753005716966	0.888810836054056
Merged-chr12-28732397-3	chr12	28731889	28732889	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	18005.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.03465287975991	5.97994927163129	6.09942784320577	6.01781266794376	6.3131789258089	5.87806019305379	0.106349436479579	0.727411108060943	0.930190693178362
Merged-chr12-3434853-4	chr12	3434352	3435352	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	7995.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	5.85035034344892	5.99965084618959	5.67723951947702	6.43188819692054	6.28349695621008	6.12018910230125	0.733881417355223	0.0154040580973864	0.135133459796239
Merged-chr2-157070483-4	chr2	157069879	157070879	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	8886.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	6.84983449702677	6.31972832361736	6.84789397878075	6.47925337572083	6.48126751390088	6.42224622330212	-0.364590689650728	0.214484441733652	0.607572051057864
Merged-chr9-113928098-2	chr9	113927598	113928598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2836.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	3.82793543546488	3.34545449259659	3.71077541930817	3.29035233110033	3.27813629867289	3.6300873598263	-0.875685777199835	0.162389477703281	0.535842287006085
Merged-chr11-32561789-6	chr11	32561297	32562297	+	965.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	28531.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.39855381818665	6.06380644783901	6.00963452195676	6.34749899385455	6.18129077374244	6.20439563481165	0.116020118098589	0.696195005257787	0.919393791747947
Merged-chr7-105631605-2	chr7	105631105	105632105	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	Lx9|LINE|L1	1966.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	2.38046831145461	2.31156299118959	2.72694847735118	2.48235366985862	2.37331973244114	2.62206105703115	0.076480842614633	0.927005052501627	1
Merged-chr4-33310258-4	chr4	33309765	33310765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011884)	promoter-TSS (NM_011884)	-46.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	6.53917467188597	6.80467312855279	6.13229572030285	6.70483597598546	6.62474438520785	6.40954023100761	0.0876450067874627	0.775372149988116	0.9446501619605
Merged-chr13-45088006-4	chr13	45087517	45088517	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85921.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.66788214103131	5.38185171208318	5.08707844635657	5.67893213231536	5.66835444489428	5.11580172808301	0.214996633370547	0.584685361972109	0.87464717111582
Merged-chr7-132656277-4	chr7	132655774	132656774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	45631.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	5.38610025586369	5.2090053788158	5.64019676079506	5.04146002404849	5.12142620408236	5.08809961713609	-0.662218363877156	0.0695909264890112	0.345208168075453
Merged-chr17-80553833-4	chr17	80553341	80554341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	9993.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	5.12035796613504	5.38011261031471	5.15427262332373	5.55971894665276	5.49297994251235	5.41429254336926	0.516528887281622	0.134909942517473	0.490956684599956
Merged-chr2-170202168-4	chr2	170201675	170202675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59500.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.27576607882269	5.41744277925633	5.137767390468	5.52390149495505	5.30747057968138	5.64925801121366	0.3943100901521	0.264061525376667	0.661946214222778
Merged-chr12-112581289-4	chr12	112580777	112581777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7507.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	6.03629925265601	5.63382998579863	5.55613704976679	6.07508462434174	5.84385536079438	5.36019671055244	0.0638463611249686	0.86364014769383	0.968269312109804
Merged-chr2-160369504-7	chr2	160369158	160370158	+	736.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2593.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	3.84444242920784	3.8974482146959	4.15309148166252	4.11603078703238	3.94722144469527	4.03760600123535	0.209890953738676	0.675704822355293	0.912283739388921
Merged-chr6-34629209-4	chr6	34628709	34629709	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	30705.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	2.56266561648819	2.52719228608762	2.69663331032173	2.62836144393646	2.6542132123861	2.88761481651878	0.719040755963767	0.343880733462737	0.732645864957409
Merged-chr1-153749335-4	chr1	153748830	153749830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-96.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	7.55240407768609	7.71380425882191	7.13138282532978	6.94679663849209	7.31410485709836	7.12398231837531	-0.527240209854583	0.0548770095201096	0.300982546183461
Merged-chr19-41377210-2	chr19	41376710	41377710	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	MIR3|SINE|MIR	7860.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.59820268141308	4.62589401605479	4.68476531097199	4.53351850476163	4.62509099862312	4.63240442134208	-0.0872626597875301	0.830878446959479	0.960370002015736
Merged-chr19-6992658-4	chr19	6992162	6993162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357001)	promoter-TSS (NM_001357001)	-80.0	NM_001357000	57431.0	Mm.10721	NM_020566	ENSMUSG00000024963	Dnajc4	Hspf2|Mcg18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding	5.47549634452923	4.99088110204826	5.27774827155294	5.51616096758308	5.43022271541373	5.30970606706365	0.317679326927215	0.384154062723229	0.765346372586482
Merged-chr8-26154742-2	chr8	26154242	26155242	+	657.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3427.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	3.6611606802666	4.01586276432919	4.26372822939662	4.36392329485068	4.30682022929245	4.33113622697928	0.951650116620478	0.064662564266099	0.331338516334322
Merged-chr1-13980470-4	chr1	13979971	13980971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-193542.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.48215552981774	3.88800142604012	3.76777420807226	3.61361381538903	3.5171196359673	4.06755879017542	0.0750645516685735	0.899582669204379	0.976656120908248
Merged-chr2-122153043-4	chr2	122152542	122153542	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009735)	TTS (NM_009735)	5355.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.01848914604591	4.74411163818539	5.33711094572803	5.08966998583648	5.16858658313243	5.31260921303575	0.307287996602286	0.434954747019374	0.798753078814766
Merged-chr4-55472813-4	chr4	55472304	55473304	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53962.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	2.76845314998021	2.75506376709631	2.97505624720969	2.73278152482508	2.80271915923365	2.68445488240619	-0.451049398156854	0.537426083319714	0.854490896255191
Merged-chr18-82475126-4	chr18	82474678	82475678	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010777)	promoter-TSS (NM_010777)	55.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.49179775866983	3.72559430983629	3.39054017395289	3.32824616839103	3.23277019042242	3.46245081510668	-0.806413755974983	0.184881768260376	0.568879601117127
Merged-chr12-82470241-4	chr12	82469762	82470762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146663.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	4.38224353755225	4.36499483153777	4.16475575973096	4.43804472424392	4.30314519842632	4.02918387102818	-0.102117309552725	0.829929393702785	0.960135212046345
Merged-chr2-144291403-2	chr2	144290903	144291903	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	20499.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	3.21710567844309	3.23738882231335	3.2927927396485	2.93840441349115	2.98777724554686	3.36320231077127	-0.626281753671387	0.350295529935535	0.738319835221541
Merged-chr6-72166906-2	chr6	72166406	72167406	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-43709.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	2.03728047936374	1.90486742121184	2.12976330083598	1.815600029798	1.90309129682555	1.87402834241262	-1.36585289266483	0.171757724670102	1
Merged-chr11-75168932-8	chr11	75168409	75169409	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-757.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.24842248752572	7.03662011516377	7.32647053877012	7.5784681549608	7.26409447702601	7.44713029299637	0.33961684874097	0.168934395578319	0.545531802905646
Merged-chr13-66933743-3	chr13	66933263	66934263	+	967.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	-691.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	6.25794629241471	6.38636182383569	6.39052017998293	6.02934748210478	6.00384557287005	5.84213182137663	-0.637854809216927	0.0254620603399942	0.1891649211402
Merged-chr2-69862262-2	chr2	69861762	69862762	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009278, intron 1 of 11)	intron (NM_009278, intron 1 of 11)	700.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	7.16969008576448	7.05684135680867	6.81453435604861	7.19844257290415	6.91405009201126	6.85737562325278	-0.0433977456598512	0.869365708442396	0.969788171765313
Merged-chr14-31173529-2	chr14	31173029	31174029	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 18 of 20)	intron (NM_022656, intron 18 of 20)	-4888.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	5.55966328701059	5.57577627051062	5.457815483212	5.27552856025351	5.29862085246265	5.16777255528033	-0.550713846912657	0.101290016445214	0.424466937286253
Merged-chr2-73054253-4	chr2	73053753	73054753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73807.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.52060497886867	6.25745847364525	6.53723912436001	6.62079868138099	6.58857202034628	6.74085386903148	0.33343094213826	0.215945742821773	0.609325964553363
Merged-chr4-126062835-2	chr4	126062335	126063335	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 1 of 9)	T-rich|Low_complexity|Low_complexity	4270.0	NM_172701	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	3.42184472010945	3.20889014627382	3.71544238371085	3.86331218432599	3.78496996816444	3.51821030409863	0.974701011833515	0.111388451175882	0.445871935353881
Merged-chr12-119089559-2	chr12	119089059	119090059	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123138.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	2.58055624397924	2.54777099497671	2.87326472453355	2.8185236564851	2.78200215061424	2.76604094840338	0.648019607090899	0.389977547893895	0.769401696657453
Merged-chr14-79482421-4	chr14	79481914	79482914	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-1146.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	7.57842660131948	7.91901627485796	7.61178455928069	7.65357707865311	7.86778340407519	7.65905283812478	0.0260725560565619	0.913015978400311	0.980521208172103
Merged-chr16-4896819-4	chr16	4896326	4897326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	10726.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.38775182202004	4.50773770646295	4.51606563923611	4.18381447487758	4.19630835442782	4.33012577499148	-0.625652309062342	0.16013266555861	0.532717049248392
Merged-chr17-27587439-1	chr17	27586939	27587939	+	735.5	f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-21712.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	3.7764553279212	3.62960331015084	3.64590731448548	4.42943970248953	3.92814216809388	3.72043798449884	1.1656627822721	0.0410932426326575	0.252985645121894
Merged-chr2-6716759-3	chr2	6716207	6717207	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4955.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.84285622399373	5.84408922386499	6.03775901141098	6.18754968879809	6.13406895115935	6.03117616712975	0.380199521578553	0.19272247071041	0.579693140399516
Merged-chr11-103345004-6	chr11	103344428	103345428	+	915.297241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133715)	promoter-TSS (NM_133715)	175.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	4.45402843026202	4.14051971995395	4.45234074298697	4.96532888982246	4.72194031418016	4.72670246778754	1.1165074474293	0.0104786035182603	0.103773344625971
Merged-chr15-73614856-2	chr15	73614356	73615356	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	2468.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.99359453927006	5.32962974214698	5.34683617595565	5.45170360149692	5.5734204644666	5.37968755813126	0.48858335392174	0.167446977595569	0.543321171103265
Merged-chr10-62602860-4	chr10	62602376	62603376	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019553)	promoter-TSS (NM_019553)	-578.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	6.97316894755594	7.37380190272521	7.16511851252529	7.21876645735173	7.43634281071484	7.33897932823537	0.227836935657325	0.366350234156371	0.751393188978858
Merged-chr19-55681460-4	chr19	55680961	55681961	+	841.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	MER58B|DNA|hAT-Charlie	20743.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.83165991192602	3.71129996867633	4.22579954493677	4.2483459454014	4.24061233916886	3.63077724695747	0.403722777421058	0.4899706494871	0.829980359087456
Merged-chr2-5797946-1	chr2	5797446	5798446	+	879.5	f0_balb.idr	intron (NM_133837, intron 11 of 12)	intron (NM_133837, intron 11 of 12)	-47088.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	4.5761721200548	4.3619565430315	4.55903317125079	4.15016724016665	3.96715004635878	4.19906630139761	-1.08397170438837	0.0197107553697797	0.159931012463055
Merged-chr16-32402994-4	chr16	32402511	32403511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	2505.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	5.03541396787266	4.67598018331458	4.69960934196888	4.85746814014976	5.00946686735979	5.12991160054872	0.393938051090807	0.326873100629684	0.719183905339082
Merged-chr12-99796111-4	chr12	99795629	99796629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	87313.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	4.26074644722462	4.13760870606343	3.71792529152717	4.0066898128411	4.13281988126522	3.90406648564533	-0.131147606498618	0.806590292063211	0.954229320413963
Merged-chr3-133583039-4	chr3	133582443	133583443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38553.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.51597482818672	6.4668174580545	5.7948765212182	6.37893805957895	6.5066915158186	5.82997727380701	-0.0466357260507444	0.897994516350727	0.976213110836171
Merged-chr9-111604217-3	chr9	111603723	111604723	+	812.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 4 of 10)	intron (NM_016853, intron 4 of 10)	86125.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	3.30007212428494	3.33035771119106	3.53603884311142	4.16565759310255	4.20746845960323	4.2551655630066	2.92651981783624	7.55414939467915e-07	4.24419758833533e-05
Merged-chr1-135742671-2	chr1	135742171	135743171	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	intron (NR_153810, intron 2 of 3)	13504.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.43904146059092	3.10401336242132	3.3633252342121	3.59146570436027	3.72848440573835	3.65458922928919	1.31804784201611	0.0307304391111831	0.211972011735333
Merged-chr18-85678433-2	chr18	85677933	85678933	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-716519.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	2.19123450435596	2.15406194488156	2.29124398841865	1.96877935824383	2.02220904620235	2.10540738556459	-1.40532913265831	0.132065816060844	1
Merged-chr1-157017685-4	chr1	157017177	157018177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78051.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.94726946723298	6.01113682449308	5.96881646435888	5.56168536883627	5.75625497649241	5.93815507997721	-0.395136966132053	0.200351219928108	0.589304122018381
Merged-chr5-125381689-2	chr5	125381189	125382189	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8328.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.75419917945214	3.58277533309567	3.838544574637	3.89969880273582	3.88704911393671	3.95623766646681	0.608996943954065	0.244713373539296	0.642068650565651
Merged-chr3-9003259-1	chr3	9002759	9003759	+	562.0	f0_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	945.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.96891309832386	7.47257994363779	7.1170415603371	7.25635495745934	7.47464534987173	7.24880097410387	0.1871571951697	0.481311048906785	0.825025089591081
Merged-chr4-43264559-3	chr4	43264079	43265079	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310758, exon 39 of 39)	3' UTR (NM_001310758, exon 39 of 39)	-2580.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.04803025068137	2.85135771996565	3.20677534931818	2.70248899196626	2.67989339703833	2.75594882765645	-1.69897870237227	0.0236356512489783	0.180296595996057
Merged-chr9-109832779-6	chr9	109832245	109833245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018757)	promoter-TSS (NM_018757)	-49.0	NM_018757	54369.0	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	5.59650344187647	5.77146087801768	5.78796414232303	5.80913542114959	5.75248731530639	5.35940157550143	-0.0935960438896463	0.779254811553695	0.945710994231145
Merged-chr17-36025580-2	chr17	36025080	36026080	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-5020.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	5.29112450389259	5.29365933289559	5.42200875616759	5.10214425484037	5.20023453469774	5.30675865086052	-0.262781183128996	0.449175033307887	0.807594795348397
Merged-chr4-130824951-2	chr4	130824451	130825451	+	630.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	32414.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.14082764233705	3.71720789706144	4.14414996860938	3.94548828038919	3.99335378665251	3.97892463478927	-0.113783657788741	0.827075611815554	0.959351941492659
Merged-chr17-74601375-4	chr17	74600894	74601894	+	909.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 19 of 72)	intron (NM_007566, intron 19 of 72)	73099.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	5.80545309482982	5.68442595131101	5.81950491364683	6.28224752307988	6.4953099772386	6.30507198418991	1.03372655796102	0.000362135848244048	0.00812637531302339
Merged-chr3-130731284-2	chr3	130730784	130731784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	-886.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	3.68912192883384	3.4191204651054	3.8008702408565	3.72791960683829	3.49100661313762	3.32547727245615	-0.39557584925698	0.5136020223163	0.842682436267988
Merged-chr10-62449890-8	chr10	62449386	62450386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	-148.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	8.45843273708947	8.74913466839553	8.30239990656708	8.42535831558103	8.44879172203021	8.10065935016159	-0.253538020116105	0.289575497306329	0.687289576697617
Merged-chr2-62653267-2	chr2	62652778	62653778	+	553.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-7023.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	3.69770023459761	3.79647973075735	3.58979862140471	3.58579665667251	3.5887839376537	3.49193988317218	-0.496497117125182	0.373481784257705	0.757431872687979
Merged-chr17-40875758-2	chr17	40875252	40876252	+	699.25	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_027834, exon 2 of 2)	3' UTR (NM_027834, exon 2 of 2)	4806.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	2.62713817821308	2.69411841365409	2.60563300393745	3.1989983169243	2.72827666684128	2.87978933121169	1.57860350760637	0.0418450759179531	0.255905121048143
Merged-chr7-143127843-2	chr7	143127343	143128343	+	999.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	20589.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	3.99319759264577	3.78552872643199	3.65300494518149	3.82388801663269	3.96231226066438	3.9358465876123	0.262675895053294	0.619653314925161	0.889868376148509
Merged-chr10-78457942-4	chr10	78457461	78458461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6987.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.71743573688925	6.61942933628474	6.5410627344454	6.72997898385849	6.63581315779771	6.0784312608344	-0.167866719622348	0.577912725698506	0.872239383750968
Merged-chr17-88057285-2	chr17	88056785	88057785	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	7647.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	3.09475725290547	3.09385678982987	2.96003224502741	2.98847638402008	2.95408566452911	3.20673297202057	-0.0282340447233028	0.966443397500689	0.992315915860502
Merged-chr10-118104149-3	chr10	118103641	118104641	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-37646.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.33767879000108	7.56171002479624	6.94218236699305	6.8726704750694	7.0420951952505	6.89696084209293	-0.561869663474431	0.0402270795965085	0.249792152169125
Merged-chr17-87327150-4	chr17	87326652	87327652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	44266.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.55273307477679	3.48597028587229	3.34320217105409	3.45978308045818	3.29243955010813	3.58051178238479	-0.0967897559689245	0.871069821647353	0.970222087171093
Merged-chr8-3467666-4	chr8	3467176	3468176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026951)	promoter-TSS (NM_026951)	-28.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	5.35804883995896	5.33574357447548	5.08551982029604	5.11850691278747	4.98592005251325	5.11549990604419	-0.422648475456274	0.241704363774969	0.638803036215977
Merged-chr2-120574743-3	chr2	120574243	120575243	+	842.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	7072.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	6.15250984963849	6.03318148784823	6.00725761958343	6.53054282494856	6.67468472047437	6.44597972813501	0.81086111410646	0.00336672869699443	0.0458192282334826
Merged-chr8-70344611-1	chr8	70344111	70345111	+	728.0	f1_balb.idr	intron (NM_030680, intron 1 of 23)	intron (NM_030680, intron 1 of 23)	8668.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	3.08570149946434	3.06835146723907	3.37591234528017	3.10706507852735	3.06300473666869	3.54577569749619	0.29199677496798	0.665458649609836	0.907852501192998
Merged-chr4-141765215-3	chr4	141764727	141765727	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 13 of 14)	intron (NM_172338, intron 13 of 14)	18552.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.71756110790459	5.83558638043502	5.56823650488292	4.17892809939692	3.75090624446368	4.21125726315527	-4.41370722579634	5.12787778116576e-17	2.10187415968099e-14
Merged-chr8-40023178-1	chr8	40022678	40023678	+	573.0	f1_balb.idr	Intergenic	Intergenic	263775.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	3.46166030737238	3.82057774475178	3.45345303873416	3.5254661128511	3.43646817096138	3.88517455778442	0.0931523164028339	0.878073742955278	0.971816559882595
Merged-chr10-96616867-4	chr10	96616360	96617360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-141.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.73927559297534	7.8052364174788	7.72470605070749	7.61066689715465	7.88880128333192	7.46138745811119	-0.118128413825182	0.618895481089802	0.889524760662882
Merged-chr15-81421724-4	chr15	81421191	81422191	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	intron (NM_177310, intron 2 of 8)	-13418.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	6.17117377279846	6.25173194439999	6.52081480823024	6.24776341095678	6.46327539205605	6.6282828024192	0.22524873333719	0.438063289861823	0.800392257304524
Merged-chr10-128697649-2	chr10	128697149	128698149	+	738.541626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016756)	TTS (NM_016756)	-1381.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	4.15496237526201	4.19942581494742	4.30248786294262	4.06222369774943	4.16813526996977	4.40980321214368	-0.00707691731401646	0.988015860530041	0.997268471577753
Merged-chr9-64252904-3	chr9	64252479	64253479	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	626.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	6.95409615249328	7.12509944116367	7.36557866912996	7.27870218922164	7.27346692250317	6.94559900041744	0.0453961380391072	0.862661073462068	0.968083292979043
Merged-chr4-40269840-4	chr4	40269342	40270342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134097)	promoter-TSS (NM_134097)	-1.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	8.07522338335625	8.28841751811088	7.97914472991395	7.95868426754895	8.15010370945753	8.03518740847261	-0.10298561090887	0.643066282630962	0.899615986233075
Merged-chr2-126030350-3	chr2	126029870	126030870	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029455, intron 11 of 16)	intron (NM_029455, intron 11 of 16)	-4288.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	3.81467879981346	3.99344038891502	3.69099582789426	3.84078617029595	3.89441731061791	3.76248539849911	-0.0277834123735464	0.958144153456999	0.990000537228272
Merged-chr2-27699703-4	chr2	27699159	27700159	+	945.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-9633.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.95442038978848	5.90209547866671	5.89610272666249	5.79862892079636	5.80588688591344	6.0700022847202	-0.0547454285005909	0.856115408273893	0.966375464211684
Merged-chr11-59228970-2	chr11	59228469	59229469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	-702.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	6.41262894130577	6.72422608496829	7.01602235787406	6.53266749748529	6.82468972628921	7.12191370015573	0.171500002222089	0.57939969594104	0.87250443698034
Merged-chr8-85488079-3	chr8	85487611	85488611	+	792.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-4506.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.85445855190383	5.27540587671324	5.00850898813113	4.69948903866112	4.69511546595425	4.60825001165039	-0.874194261144478	0.0308832525894628	0.21267589753933
Merged-chr14-61549790-4	chr14	61549367	61550367	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310603, intron 1 of 3)	intron (NM_001310603, intron 1 of 3)	7019.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	5.85064370251585	5.80940837529771	5.79346795535136	6.03112364428695	6.39685302858652	5.82956723753453	0.52981277162257	0.0989081855096242	0.419360626745723
Merged-chr6-57776178-2	chr6	57775678	57776678	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 2 of 4)	intron (NM_146168, intron 2 of 4)	48947.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	2.67865726749928	2.60325533329703	2.82863458328061	2.5904555509222	2.49498115646959	2.84270407062132	-0.320415162134663	0.678450350535561	0.913485602798799
Merged-chr3-103857544-3	chr3	103857046	103858046	+	975.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2249.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	5.02597356418052	5.03559604625597	5.46804983105746	7.16103067926085	7.34250268791611	6.90951708105359	3.45985601732862	3.39332742217502e-27	9.1081286498174e-24
Merged-chr13-91681262-4	chr13	91680760	91681760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-60261.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	5.08982940127013	4.98279677864147	4.67203247682671	4.91950217030403	5.02075884102079	4.86290120124825	0.00604527605508271	0.987798424231401	0.997233411338816
Merged-chr18-38365088-4	chr18	38364589	38365589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-26096.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.94849300606133	5.23823756780285	5.04638222987835	4.85467524660811	5.13157833352259	5.00520117659214	-0.167864276110211	0.659812309500526	0.905624311712053
Merged-chr6-97214098-3	chr6	97213577	97214577	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	B1F|SINE|Alu	3285.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	4.37110718798603	4.20318898761879	4.66696010907107	4.34767575687506	4.23409896987061	4.33394021519807	-0.296667917001602	0.522202588649877	0.84749685799829
Merged-chr13-58128796-7	chr13	58128318	58129318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-262.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	8.92091539005659	8.67041190445296	8.53591186286234	8.79297588329422	8.33923677026118	8.43578591312932	-0.253497300713999	0.292121603545677	0.689341039330385
Merged-chr4-128720244-4	chr4	128719767	128720767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-7304.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.84850849277213	6.69058341351044	6.58221206075556	7.08503089174362	7.2799872382274	6.77762562344833	0.550578366754814	0.0440119661651041	0.26393857157953
Merged-chr12-51832513-3	chr12	51831970	51832970	+	995.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-2934.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	5.23327491930463	5.20465233860301	5.05309550765788	4.74373889075459	4.58648786522385	5.11742263098789	-0.763934158749352	0.0563623646557779	0.306042785061209
Merged-chr1-165192409-4	chr1	165191918	165192918	+	973.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	2015.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	3.648886428971	3.58765748022178	3.62891833257958	4.27542423327256	3.97988426687249	3.86657549318822	1.38533480779155	0.0101259595451606	0.101293681393812
Merged-chr16-55966366-4	chr16	55965895	55966895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024218, exon 1 of 6)	5' UTR (NM_024218, exon 1 of 6)	120.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	7.20881926190002	7.40928160310277	6.88592273852806	6.92042651977848	6.9455577269663	6.83782213615155	-0.442152557709428	0.0943072243660142	0.409202176724379
Merged-chr9-20997302-4	chr9	20996819	20997819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-5418.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	6.45848041362235	6.7308902947927	6.61060432800932	6.53732743477946	6.96040038685861	6.3125949964238	0.067555810114545	0.824189962394113	0.958523256704056
Merged-chr6-100671220-4	chr6	100670717	100671717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181590)	promoter-TSS (NM_181590)	-60.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	7.33509966207635	7.54074577170039	7.28050264381173	7.13476865463003	7.15811350140459	7.03738713086475	-0.418352970779384	0.0793963510089808	0.372594787135367
Merged-chr5-112297499-4	chr5	112297061	112298061	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20870.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	6.05545171083417	6.18927906258331	5.98232796971859	6.15273071787911	5.87985154305769	5.67820952049226	-0.273423865917793	0.381960382725684	0.763627090962007
Merged-chr16-44811749-4	chr16	44811251	44812251	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8977.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	5.66502889381187	6.13597224012053	5.56186415502173	5.73180198763391	5.63130615864669	5.15167234261922	-0.516945514046657	0.174172018593737	0.55334916165878
Merged-chr3-109239060-1	chr3	109238560	109239560	+	709.0	f1_c57bl6.idr	Intergenic	Intergenic	-101623.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	2.4395100614288	2.7041547382353	2.7479966299604	2.61975480197703	2.61985673745888	2.76067422046185	0.16673015975588	0.829753484053727	1
Merged-chr10-80055114-2	chr10	80054614	80055614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008162, exon 4 of 7)	exon (NM_008162, exon 4 of 7)	1095.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	5.63836710369573	5.39897850289292	5.68068639481596	5.7240747418419	5.70652135502903	5.84216283604913	0.336763283587268	0.293628872123674	0.690424156263798
Merged-chr4-128883571-4	chr4	128883075	128884075	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-565.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	4.17476446713661	4.51149774211517	4.18665833163415	3.87799891254579	3.79698580571579	4.50485261449538	-0.584275210120206	0.2857836931204	0.683240131512535
Merged-chr10-128370803-4	chr10	128370294	128371294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-757.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	6.13859216569662	5.69555333315191	5.97656434120312	6.14755628571025	5.91334860553676	5.99136029078918	0.122373449448097	0.69806240291855	0.920192269288786
Merged-chr4-136450004-4	chr4	136449510	136450510	+	980.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-19751.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	6.81255053398873	6.6794343243539	6.40260052834334	5.57580000034759	4.95295588204234	5.10507619591447	-2.51074543979034	2.46307565090214e-12	4.41697411121261e-10
Merged-chr10-24712053-4	chr10	24711545	24712545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008813, exon 1 of 25)	5' UTR (NM_008813, exon 1 of 25)	114.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	7.0180147331565	7.25485609609193	6.89514495257168	6.75938149094726	6.79958963167733	6.48582620618636	-0.574982259308763	0.0321107344391856	0.217614431602521
Merged-chr17-17585996-1	chr17	17585496	17586496	+	607.0	f0_balb.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	38493.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.00292152901387	4.84990549192752	5.43206859292273	4.95647188869775	5.44971334360364	5.41117309171307	0.37930571035745	0.352475429699963	0.740177053161581
Merged-chr18-65699327-4	chr18	65698824	65699824	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	1056.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.44792100355123	6.52889033387224	5.99748615557542	6.06164794165029	5.9399677699843	5.77177350603338	-0.713968442254868	0.023316566375134	0.178730986176154
Merged-chr6-39508228-3	chr6	39507767	39508767	+	896.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172477, exon 3 of 19)	exon (NM_172477, exon 3 of 19)	49567.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	4.47277688035054	4.21888129062707	4.51868448546237	4.00261622343501	3.82880327879856	4.06661325369549	-1.2617923455384	0.00983879887973416	0.099316605263244
Merged-chr14-47298167-4	chr14	47297647	47298647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360542)	promoter-TSS (NM_001360542)	-127.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	7.75496757727962	7.97576297417052	8.01203672569435	7.97734421385589	7.84709834577437	7.74230845171287	-0.0786778528359199	0.726486172421096	0.929867107699856
Merged-chr19-4397266-4	chr19	4396772	4397772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-195.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	8.34482417249359	8.30683883862001	7.99746511331782	8.1230409189335	8.14283250773493	8.06053788256805	-0.170700940544886	0.438998769221332	0.800937323779458
Merged-chr18-9494508-4	chr18	9494029	9495029	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44375.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.10114726622717	5.10124363137055	4.36372239109946	4.95137945697851	4.74431930481097	4.62827117518882	-0.280396532487704	0.546166660516602	0.85853015997781
Merged-chr11-23633131-1	chr11	23632631	23633631	+	1000.0	f0_balb.idr	intron (NM_027860, intron 1 of 21)	intron (NM_027860, intron 1 of 21)	500.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	5.96131844853822	5.70011888824978	5.65269203327781	5.62402007605254	5.10870101102378	5.29310699612271	-0.802124423811887	0.0247312061358457	0.185758638757127
Merged-chr11-23498073-4	chr11	23497562	23498562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290655)	promoter-TSS (NM_001290655)	-23.0	NM_172391	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	6.595654023951	6.82411758939092	6.44127061089875	6.5030723902286	6.2459670409128	6.28364186863825	-0.467617935008562	0.0979454165396439	0.417291460898387
Merged-chr11-114853291-4	chr11	114852779	114853779	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	1249.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.98407905659474	4.69020592421009	5.07420464182764	4.90796110919267	4.89600759335932	4.61133897125447	-0.218568847754519	0.59340946892327	0.878461334527753
Merged-chr4-136890056-2	chr4	136889571	136890571	+	603.5	f0_c57.idr|f1_balb.idr	exon (NM_007574, exon 3 of 3)	exon (NM_007574, exon 3 of 3)	2843.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	6.13542768173398	6.71616642651403	7.16196836422712	7.28497713121578	7.26100319614489	7.28681315684286	0.827923385884491	0.0117036678993131	0.112283961554946
Merged-chr9-41102321-4	chr9	41101843	41102843	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	B1F|SINE|Alu	-22837.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.06032896741287	4.87352747517465	4.87244076490264	5.36021087521262	5.78452116914114	5.23527248560864	1.12218470192694	0.00342823277777425	0.0465268949556418
Merged-chr14-30717010-4	chr14	30716504	30717504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	intron (NM_001166532, intron 1 of 20)	1389.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	7.90862331459161	8.30282020359751	7.81662702331591	7.93680885036968	8.28706668730459	7.70178246706792	-0.0369586040896071	0.891645728114072	0.974877243573474
Merged-chr11-118448111-2	chr11	118447611	118448611	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204129, exon 4 of 4)	exon (NM_001204129, exon 4 of 4)	4577.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	2.71667092709221	2.66552133851646	2.67734370292472	2.45325688920134	2.31962336950202	2.56287423612001	-1.52786904794598	0.0632481477509427	1
Merged-chr1-166339313-4	chr1	166338799	166339799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39868.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	5.0199643013723	4.98931055204802	4.92850124727374	5.10581329716168	4.90115364593429	5.16522392506803	0.151032918570438	0.686053761215158	0.91659539440007
Merged-chr1-191557338-4	chr1	191556832	191557832	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 9 of 15)	intron (NM_001305233, intron 9 of 15)	18212.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	4.14190658629169	4.30727910359919	3.92576303182599	4.12626658623539	4.44944830174289	3.99770385110707	0.206074333659468	0.688053714470902	0.917193226920892
Merged-chr7-45814448-4	chr7	45813963	45814963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-147.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	7.00496287273664	6.89724879641539	6.83537941106894	6.92915167023912	6.65249789816658	6.84938300355403	-0.166293187073254	0.513723699907278	0.842749134929316
Merged-chr2-167764670-2	chr2	167764170	167765170	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73493.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.51230590380771	7.81879194279067	7.36024328648742	7.59338074086405	7.81173924091069	7.36009857169888	0.03583394497459	0.891457938458885	0.97481556123419
Merged-chr8-94181177-2	chr8	94180677	94181677	+	725.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013602)	TTS (NM_013602)	2088.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	3.35500588315353	3.0173965372481	2.83091937934271	3.03539919996387	2.93096294906759	3.1559645093606	-0.223221358273877	0.756944325367272	0.93974849191549
Merged-chr16-91735503-2	chr16	91735003	91736003	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	6132.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.91870243415584	6.3632436980482	6.25652658406723	5.97471420849532	6.12033975123822	5.92198663283224	-0.302643982313831	0.326817543453395	0.719176493964409
Merged-chr7-79822278-2	chr7	79821778	79822778	+	765.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008486, exon 21 of 21)	exon (NM_008486, exon 21 of 21)	11551.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	2.87975238583181	2.86847788598254	3.12808177920975	2.97050416799444	3.01416328535042	2.96962217432771	0.136300155884954	0.841993380678447	0.963002495523594
Merged-chr15-84923236-4	chr15	84922746	84923746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016714)	promoter-TSS (NM_016714)	-182.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	7.89063908590029	8.03922764236108	7.58758807866274	7.86447072063228	7.87459930038565	7.81786802762644	-0.0107901098555118	0.963256408851469	0.991082197093192
Merged-chr4-95924465-4	chr4	95923957	95924957	+	906.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 15 of 15)	intron (NM_001113412, intron 15 of 15)	42578.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.19186826055846	2.94137395113826	3.16385096587326	3.49962956599197	3.46770172855144	3.57146437087848	1.69546373550488	0.00854371153425961	0.0902622078901313
Merged-chr10-128923107-4	chr10	128922604	128923604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015740, intron 1 of 3)	CpG	420.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	7.40191399836466	7.62785389369702	7.33498341943872	7.58714713056371	7.6572817574592	7.40339518319805	0.135551868579968	0.569468510647646	0.8688875602138
Merged-chr15-55072106-4	chr15	55071606	55072606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081288)	promoter-TSS (NM_001081288)	46.0	NM_001081288	319944.0	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	7.13563367312088	7.57584527173193	7.25603010842943	7.1862576399583	7.11536560250769	7.18232516852631	-0.270181105365507	0.28614869644614	0.683463892237707
Merged-chr18-53269733-2	chr18	53269233	53270233	+	858.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	24071.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.25540454281654	5.19105472708347	5.03171479738987	4.84079961921997	4.96051473040964	4.79266000925221	-0.631283817014807	0.0932951137073989	0.406860577639688
Merged-chr5-139295232-2	chr5	139294732	139295732	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	30232.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	4.33643456475704	4.0677763992189	4.65364640244958	4.7174140156581	4.3830737235156	4.52391678226422	0.46249621183319	0.330834245369077	0.722226411767471
Merged-chr12-108763590-3	chr12	108763029	108764029	+	863.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29782.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	3.65536570078633	3.48074589453469	4.00905193979348	3.3562536550101	3.63994572182655	3.89944545995782	-0.269347111147794	0.660215682685216	0.905906890165946
Merged-chr7-83652193-2	chr7	83651693	83652693	+	794.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360089, exon 2 of 7)	exon (NM_001360089, exon 2 of 7)	3302.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	4.68727800671471	4.82834337323775	5.38469467369982	4.58681246692495	4.54765612005085	4.87579014837935	-0.721431232064972	0.106701067848657	0.435935318307798
Merged-chr3-154332575-1	chr3	154332075	154333075	+	541.0	f0_balb.idr	intron (NR_040387, intron 2 of 2)	intron (NR_040387, intron 2 of 2)	1754.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	2.79913954726724	2.87502493618101	2.80891766510125	2.92959283852517	2.79066158345544	3.00166983881084	0.377717266731087	0.590839077882985	0.877301111216348
Merged-chr1-135670561-4	chr1	135670063	135671063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49500.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.21459908081473	5.09022861130958	5.19042504748784	4.91145159162878	4.65298119927075	4.66821001888359	-0.909273803828657	0.018296426709944	0.152576575834939
Merged-chr2-167270499-2	chr2	167269999	167270999	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29962.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.24981704891903	3.80697766180512	4.12641219041728	4.64845547881664	4.3329333209564	4.19667104556255	0.910007214990472	0.0719516293219609	0.35227273184106
Merged-chr3-116130382-4	chr3	116129878	116130878	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011693)	promoter-TSS (NM_011693)	-690.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.00395598248348	6.03218445056991	5.89581294710557	5.94624000817725	6.18962640821415	5.66149540375129	-0.0261715848494281	0.93457647488135	0.985727536128156
Merged-chr7-16581855-4	chr7	16581357	16582357	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31967.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	4.93255450057146	5.14073980842283	5.09537325599346	5.12087871518092	4.80007787155554	4.94982572975594	-0.212982255132875	0.577242887963353	0.87205828500771
Merged-chr1-131690670-4	chr1	131690167	131691167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1972.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	7.88472998848457	7.7526139776647	7.66976082353888	8.06055343779871	8.13644689283142	8.02250027079928	0.427823067706424	0.0470929050143662	0.274751538384194
Merged-chr2-50942982-2	chr2	50942482	50943482	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33298.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.32567797427509	4.62885495154053	4.21449099388292	3.90763178157393	3.93844172228744	4.28301772528896	-1.01013932662982	0.0426803978153827	0.2590531887882
Merged-chr2-130129870-3	chr2	130129356	130130356	+	999.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289747, intron 2 of 13)	ORR1D2|LTR|ERVL-MaLR	6581.0	NM_177726	241636.0	Mm.83437	NM_177726	ENSMUSG00000027403	Tgm6	TGM3L|TGY	transglutaminase 6	protein-coding	2.96395756125103	2.96405230775654	3.02210586438151	3.46748345229109	3.60007519589996	3.80686750428766	2.83320585730635	4.95895626052871e-05	0.00157102008610597
Merged-chr2-163664081-4	chr2	163663562	163664562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	L1MB2|LINE|L1	5604.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.68959505969256	5.48196502370977	5.51432667353034	5.56932461689676	5.5100487625484	5.54838682176018	-0.050343666000018	0.876474062831316	0.971334744650699
Merged-chr15-83031078-4	chr15	83030557	83031557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1107.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	5.06223542414805	4.73986885726487	5.35953244374058	5.08473707423932	5.15329641232861	5.21417208662519	0.176992849078414	0.654056119511167	0.90364131093357
Merged-chr6-99028441-2	chr6	99027941	99028941	+	949.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-143.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.13571169622743	3.91903602606967	4.1886420605316	4.38724439901046	3.78563323499205	4.25655156376027	0.227931194281096	0.665801216745	0.907920503949149
Merged-chr13-113485704-4	chr13	113485226	113486226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17118.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.22546496624795	7.00650180911528	7.12249287371341	7.18079032589681	7.05515483958698	6.59040237781763	-0.218192427202792	0.429679119323947	0.795845510948914
Merged-chr13-107755319-2	chr13	107754819	107755819	+	730.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	ORR1A3|LTR|ERVL-MaLR	67922.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.90623437521933	3.76426939371951	3.81892129907136	3.73097963162675	3.39778524706689	3.7362016683905	-0.702230334544045	0.209676967643691	0.601427182036479
Merged-chr1-172530592-3	chr1	172530053	172531053	+	650.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 3 of 11)	intron (NM_027972, intron 3 of 11)	9423.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	2.260862706743	2.35261124760162	2.55138566951298	2.58048835364749	2.43669684084079	2.74611502166487	1.22672167856961	0.14269040615337	1
Merged-chr3-69978313-2	chr3	69977813	69978813	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-29300.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	2.49267777352371	2.57266050172235	2.68071019887461	2.80856696490691	2.86348577186386	2.87700936086504	1.50285737270105	0.0475741629111052	0.276280775230824
Merged-chr18-60212591-2	chr18	60212091	60213091	+	603.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033767, exon 2 of 3)	5' UTR (NM_001033767, exon 2 of 3)	514.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	5.99096385454382	6.28335254269914	5.9818621282609	6.58393925009461	7.01750516373963	6.33770236662078	0.962518924165031	0.00262280939455828	0.0380273086081905
Merged-chr11-120151360-4	chr11	120150868	120151868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164799)	promoter-TSS (NM_001164799)	-17.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	7.19722426643493	7.12207888336405	7.05064362642243	7.34455337270604	7.43701952463093	7.14781759963955	0.291312224203067	0.224781936460161	0.61969569176917
Merged-chr12-108643681-2	chr12	108643181	108644181	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	7928.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.45715881162859	4.53743491708148	4.29534328830707	4.71099820112355	4.2076800122819	4.21913816337331	-0.0900783966342454	0.849976037021683	0.964762455509634
Merged-chr16-31290965-4	chr16	31290501	31291501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15724.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	6.99857885169002	7.66123765859035	6.97233075937717	7.06276224523847	7.37111675432149	6.85000768223563	-0.210367804520271	0.503330946738171	0.836987118114029
Merged-chr9-21546627-4	chr9	21546118	21547118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-276.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	6.60149817724808	6.53550289375281	6.35734481813757	6.58367301208258	6.63116780998022	6.61739500737283	0.1620756048899	0.536812695426721	0.854215768737235
Merged-chr9-65740779-3	chr9	65740279	65741279	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64231.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.6335392912862	5.94493708987175	5.94689923992022	4.19661760970728	4.05027074398267	4.61613045084216	-3.66242394762581	1.00300642450672e-15	3.18542589963187e-13
Merged-chr9-13525241-1	chr9	13524741	13525741	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	93880.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	5.03871995827615	4.80700777740716	4.92982550025967	4.33575980213961	4.22962421005352	4.66463784057859	-1.25427282061329	0.00374276003734886	0.0495122139322229
Merged-chr1-16703074-2	chr1	16702577	16703577	+	851.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001159711, intron 3 of 4)	intron (NM_001159711, intron 3 of 4)	14621.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	2.91205053915546	2.87103836492068	3.09140069471245	3.27734638284729	3.05931981914441	3.16385427712178	0.96676016413019	0.150041765736294	0.516749803120264
Merged-chr9-22388725-2	chr9	22388225	22389225	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	481.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	4.32850799762172	4.35341591792954	4.84942464195	4.72705738969479	4.51534684611804	4.50212490225516	0.164263283997599	0.719570987902621	0.927917795122043
Merged-chr2-164523557-2	chr2	164523003	164524003	+	788.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	25978.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	4.71214606403604	4.50674373222932	4.44026579762426	3.95965055211329	4.12546295827382	4.0370460173091	-1.39227455923237	0.00326423922324402	0.0448795137620107
Merged-chr4-43043312-3	chr4	43042778	43043778	+	816.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	B1_Mus2|SINE|Alu	2942.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	5.31960203077494	5.38378070941266	5.94781812469699	5.83051289511063	5.92654773436823	5.94209858988695	0.609365342436673	0.0814330432403967	0.377489662088061
Merged-chr2-27693907-3	chr2	27693344	27694344	+	943.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15448.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.30907085225157	6.60418230799948	6.71925337336978	6.12187148342192	6.42187596374141	6.31849126487533	-0.410992240482194	0.158494355795225	0.530298699465564
Merged-chr7-6149243-2	chr7	6148743	6149743	+	585.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	6728.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	3.21895339987809	3.35193261865736	3.27943570201166	3.26409064952355	3.15715932835944	3.51183984702901	0.103130896338522	0.869130982559432	0.969772902205443
Merged-chr2-152826783-2	chr2	152826283	152827283	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	1706.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	2.77358770858371	3.08077327631163	2.90674272855172	2.72377758919001	2.55873949516569	2.97948294052605	-0.853047442164149	0.267631499868116	0.664867792471075
Merged-chr2-90574374-4	chr2	90573894	90574894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	6253.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.74450610226237	7.31305068961633	7.33146897533097	7.46121242188146	7.51713538662842	7.38872433255142	-0.0367319314052611	0.883681345588289	0.973438264840472
Merged-chr19-8252526-2	chr19	8252026	8253026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33626.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	4.25035249063671	4.16738514086135	4.45722780093137	4.31735102351786	4.0290437668618	4.3590584404645	-0.149639666207612	0.752783018231968	0.938404611021073
Merged-chr9-45113171-3	chr9	45112675	45113675	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-4701.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	4.61136634477558	4.49082098859589	4.70978398826298	3.67657884241663	3.37220521897952	3.69615270713903	-3.42825243604024	9.7089297650012e-09	8.79064883445288e-07
Merged-chr9-99179882-4	chr9	99179378	99180378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39667.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.41569208067435	7.51554338300284	7.17306237996887	7.54793591046677	7.70756480312936	7.33995872067135	0.241580325085468	0.331724048674004	0.723003238653287
Merged-chr4-132483172-4	chr4	132482675	132483675	+	915.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19254.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	5.46110828547999	5.50455923643531	5.31041928608661	5.13013800849342	5.05104052727088	5.21291286601127	-0.620388335777483	0.0737987729993118	0.357118249707865
Merged-chr5-138442474-4	chr5	138441974	138442974	+	854.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028130, intron 1 of 4)	intron (NM_028130, intron 1 of 4)	998.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	4.42727569858979	4.51452471925368	4.52042061294616	4.44379848762659	4.33735049051132	4.28045086594591	-0.330883813120583	0.447260958241646	0.806316645191341
Merged-chr11-11513555-4	chr11	11513034	11514034	+	827.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347068, intron 8 of 8)	intron (NM_001347068, intron 8 of 8)	24268.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.19584068763305	3.05254476080012	3.42498003236997	2.96330372813319	2.93563968966019	3.28695486103172	-0.707012789106051	0.301469663758169	0.698200786354329
Merged-chr11-103050517-2	chr11	103050017	103051017	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 3 of 11)	RCHARR1|DNA|hAT-Charlie	21974.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	4.07906597057775	4.08513358260319	4.30282433159364	4.14809760424148	3.84530067902109	4.10470603419779	-0.348943080004326	0.480852978412948	0.82484061161583
Merged-chr11-29549587-4	chr11	29549098	29550098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163521, intron 1 of 11)	intron (NM_001163521, intron 1 of 11)	-1558.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	5.85072129083825	6.08877488207497	5.86996785184914	5.65166148428992	5.85422987901832	5.78048937642091	-0.316002963598599	0.306796857040796	0.703055711392194
Merged-chr4-150608819-4	chr4	150608308	150609308	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	43366.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.89147110716261	5.23720222544229	4.83664734933928	4.94458708980584	4.78838045639462	4.86421129094681	-0.319178928956451	0.420650947615496	0.789802348657862
Merged-chr12-40788970-4	chr12	40788473	40789473	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-235117.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	4.9006714401218	4.93527325397711	4.68059868966073	4.78866091221982	4.61797643288837	4.48596735064152	-0.484729172108419	0.239090679311777	0.635822725052714
Merged-chr9-100531326-2	chr9	100530826	100531826	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	HAL1|LINE|L1	14808.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.36463945284796	3.67387444550079	3.48291897230879	3.39337947774922	3.13457729242967	3.44479638208853	-0.73570334603891	0.236177620431611	0.632564053203511
Merged-chr17-78248587-7	chr17	78248076	78249076	+	712.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48328.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.70851937480059	5.54407206070012	5.35660505105655	5.8778151596845	5.88758693364096	5.63622312029132	0.473613223230995	0.149469154640288	0.515952267965528
Merged-chr6-31184686-4	chr6	31184181	31185181	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	33793.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.00804575632883	5.91812661464211	5.56015098344947	5.32663775596158	5.29670966003432	5.41161451452953	-0.961562607314462	0.00414529565079261	0.0533356673126877
Merged-chr6-122874478-4	chr6	122873965	122874965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-92.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	7.99709754501872	7.92915479489036	8.00390021541943	7.91255252141217	8.02722911522874	7.69025679196065	-0.120191962190913	0.589576955583982	0.876892891421814
Merged-chr16-31929077-3	chr16	31928597	31929597	+	924.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4754.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	4.05808199271643	3.90935291986212	3.9346581552311	4.47953934007717	4.17829095147441	4.50463151925993	1.16505511085429	0.0167699135479559	0.143676994079316
Merged-chr18-4959350-1	chr18	4958850	4959850	+	561.0	f0_balb.idr	Intergenic	Intergenic	-87239.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	2.95572694062105	2.72503195832521	2.98291941877669	2.57965213831372	2.55125793598733	2.94084683235916	-1.01974527097158	0.191730193037439	0.578527919287033
Merged-chr2-52591083-4	chr2	52590579	52591579	+	886.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-32468.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	2.47026439067201	2.4655990666485	2.36053123464505	2.58534890026175	2.4204819898162	2.68904351472825	0.781272224410844	0.335186199137995	1
Merged-chr17-23977291-1	chr17	23976791	23977791	+	563.0	f0_balb.idr	Intergenic	RLTR20B2|LTR|ERVK	-2061.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	3.81386467079841	3.64573871017631	3.54379542254169	3.88222434747681	3.85300070458297	4.02927412324577	0.773280540169662	0.151846510387863	0.51961031569145
Merged-chr2-70939332-3	chr2	70938835	70939835	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	79039.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.1768686298202	3.73555592698423	3.84395934649536	4.40258793940667	4.81117828045197	4.32870758189376	1.63920698356448	0.0018375753179191	0.0289365948246428
Merged-chr8-111056283-4	chr8	111055786	111056786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028274)	promoter-TSS (NM_028274)	-53.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	5.24339773389731	5.42436898661589	5.52798089160595	5.22806006670787	4.75578632878314	4.84039720107912	-0.910020344130766	0.0190470955767093	0.156399888252485
Merged-chr18-36730152-2	chr18	36729652	36730652	+	903.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-3337.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	2.78781757113318	2.67754519748441	2.96219793986794	2.77480704434213	2.9648345946214	3.25298081227321	0.95082999752153	0.19741217625346	0.585377298089801
Merged-chr17-36019397-2	chr17	36018897	36019897	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 1 of 5)	MLT2C1|LTR|ERVL	1163.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	4.20936950914883	4.49480695762815	4.63160698767836	4.41638640464665	4.38121536283088	4.69661235346334	0.117946926980243	0.795460898593507	0.951137542573805
Merged-chr5-88727924-3	chr5	88727426	88728426	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	L1MC4|LINE|L1	7055.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	3.93461181853069	4.04831241983311	4.01184936594098	4.85614294761164	4.56254252601495	4.3342050667589	1.6273713154947	0.00069586182269418	0.0136134713613256
Merged-chr13-22026625-4	chr13	22026179	22027179	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8964.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	4.97120317051904	4.7675227626973	4.71904211371369	4.83554967047196	4.52703998779045	4.57833325688293	-0.410903091635096	0.321384615199031	0.714837665357421
Merged-chr14-44989961-4	chr14	44989440	44990440	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	1829.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	5.93790022181812	6.10839754721871	6.04045900994146	6.35727760738403	6.29019845891504	6.27190389887929	0.466618317441044	0.0961635045844538	0.413411154195982
Merged-chr16-11067056-4	chr16	11066529	11067529	+	901.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	CpG	731.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	6.32037708775171	6.20773464152177	5.94895206628714	6.0169942892692	5.92190265474812	5.69176638483498	-0.491651587266336	0.111754886871324	0.446461524236084
Merged-chr18-36359295-4	chr18	36358776	36359776	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	10652.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	5.37294134268398	5.60601589758263	5.70735022321894	5.46369446586363	5.55251364972606	5.69279420711961	0.010123339719499	0.975735925352351	0.994540154302743
Merged-chr9-104628629-1	chr9	104628129	104629129	+	711.0	f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	B4A|SINE|B4	59146.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	5.58963669708926	6.35307458298187	6.4460088754089	5.01867332264707	5.01449263732759	5.23966615608013	-2.04050686300981	1.86606472889698e-07	1.23820984020781e-05
Merged-chr6-129182610-2	chr6	129182110	129183110	+	756.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053109, intron 1 of 4)	ID_B1|SINE|B4	1995.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	6.35540515045057	6.65629023370655	6.66908271080231	6.94896408734454	7.12139633638954	6.49982203825738	0.515670485385667	0.0814423967888541	0.377489662088061
Merged-chr10-79850799-2	chr10	79850299	79851299	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029447)	TTS (NR_029447)	-3633.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	3.83196663144589	3.73575671864237	4.00092231220487	3.69748423027801	3.56011242324809	3.88285598626738	-0.470500741347689	0.386203449403688	0.766979386557564
Merged-chr16-45375987-3	chr16	45375475	45376475	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33078.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	3.28083780423748	3.41974813559321	3.60842265567578	3.05286982143489	2.99099131926499	3.2026145259245	-1.53559187079378	0.0195935883723787	0.159213213016493
Merged-chr4-58566908-4	chr4	58566394	58567394	+	917.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13403.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.80255115729562	3.79623992769093	3.6235500722286	3.66952164879183	3.76404846204718	3.80037505173571	-0.0140246694292844	0.979074197152117	0.995160277495735
Merged-chr8-108576958-3	chr8	108576467	108577467	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	7710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.55519521300022	2.61486937870702	2.55674585594614	2.74935044956775	2.64383901476428	2.7565326877941	0.774932010580637	0.303559178138837	1
Merged-chr1-54477452-2	chr1	54476949	54477949	+	831.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-38423.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	3.40754236237684	3.35242353338817	3.54348061479949	3.78745904188293	3.48262692652808	3.81688959425457	0.95141952417993	0.101992063368777	0.42592499918641
Merged-chr4-155485795-2	chr4	155485295	155486295	+	722.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5566.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	5.01802086592779	5.4025276846093	5.4736818398418	5.09619085498082	4.98064489103667	5.30756536489043	-0.372110514083765	0.327203702410029	0.719396012109034
Merged-chr17-34105692-2	chr17	34105192	34106192	+	663.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10383.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	3.59675203453706	3.70049081676675	3.85406706124867	4.46414535955403	4.39473971379071	4.39675144934703	2.1287396672427	2.74675778449695e-05	0.000956285446579172
Merged-chr18-9505183-6	chr18	9504675	9505675	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55021.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.17277002759944	6.12518996507745	5.1619833838213	5.89045425440995	5.89210818343942	5.10706376317956	-0.3874062605406	0.62007166540641	0.890023686663772
Merged-chr7-125542061-4	chr7	125541547	125542547	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10235.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	4.6538750024235	4.33693170257076	4.35056095771788	5.06581188932437	5.05177442613694	4.85181183437967	1.24222190128439	0.00320343776526508	0.0443071226017581
Merged-chr10-87817031-4	chr10	87816561	87817561	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41204.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.54659096856184	5.06897800420092	4.76747975529394	4.48066499246585	4.5459491383157	4.36731869504574	-0.819715556421311	0.0646268014442749	0.331269446497648
Merged-chr7-6171171-2	chr7	6170671	6171671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	7.08575053787468	7.04938369538734	6.67085955340308	7.31415587593059	7.42463658381433	7.08109660656627	0.494787727102895	0.062508520675837	0.324994313196391
Merged-chr19-5638440-2	chr19	5637940	5638940	+	931.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 2 of 11)	exon (NM_009045, exon 2 of 11)	950.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	7.15346308169091	7.08261279068581	6.80733542541996	7.07363732232645	7.16452782042451	7.1193344868364	0.13394858363751	0.58998811258134	0.877060163469295
Merged-chr11-46373272-4	chr11	46372776	46373776	+	929.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281966, intron 1 of 16)	Lx8b|LINE|L1	16239.0	NM_001281968	16428.0	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	4.55404638044837	4.9722373483069	4.96174763958329	5.20643231696341	5.2215173133604	5.16355425170037	0.767202202518508	0.0491206118335208	0.28164469883156
Merged-chr6-115601921-4	chr6	115601424	115602424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023290)	promoter-TSS (NM_023290)	-14.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	6.57712253300201	6.64322867491336	6.44061686041855	6.62338550324383	6.54115142736365	6.32339642549647	-0.0849393266739597	0.753452195921302	0.938549578325581
Merged-chr18-4635601-1	chr18	4635101	4636101	+	547.0	f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	intron (NM_001081963, intron 1 of 3)	672.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	2.71721854603548	2.43617931328536	2.88098712387391	2.67060545012291	2.21650526368161	2.6558825836366	-0.86095165509492	0.352841791735881	0.740329823404675
Merged-chr11-80038303-3	chr11	80037817	80038817	+	730.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42674.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	3.49971919479499	3.23338485670802	3.26114630316663	3.40304747584478	2.91422997991111	3.33379060194925	-0.426087664733477	0.532750509271947	0.851971173271146
Merged-chr13-9189293-3	chr13	9188785	9189785	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-87240.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	2.92171600416274	2.55970632689965	2.63949329076067	2.79142832362424	2.5518234568707	3.01754249182711	0.401248322782272	0.615232594147662	0.887866671887744
Merged-chr2-118008214-4	chr2	118007702	118008702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	103000.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.18882470384762	5.78240288475748	5.74317380936348	5.93274432708969	6.27043294315088	5.83278552712442	0.189054819176686	0.572352971619393	0.869819295413984
Merged-chr17-17449523-3	chr17	17449055	17450055	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46869.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	7.05583573172201	7.45320631047171	6.94095153456867	7.0042398206744	7.09199944994195	6.62800892167375	-0.369055863457228	0.20001586843273	0.588817278632606
Merged-chr9-48816968-4	chr9	48816490	48817490	+	869.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	MIR3|SINE|MIR	18955.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	5.0044425553977	4.77025157490371	4.51138006961492	4.972385663418	4.73084132285713	4.43872618857761	-0.108180936162835	0.808677161421693	0.954721853010197
Merged-chr1-161497492-4	chr1	161497005	161498005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 1 of 2)	MIR|SINE|MIR	2848.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	5.05774561142665	5.14084986424526	4.73652739987154	5.09154675796594	5.1998176710154	4.96489058466709	0.198413571904853	0.608415281257137	0.88499088740025
Merged-chr12-85477938-4	chr12	85477446	85478446	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010234)	TTS (NM_010234)	4056.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.81646882989251	3.07425410225112	3.30455719710604	3.18973147359286	3.01724961823153	3.13635223320252	-1.31830549615838	0.0614867740136374	0.321691268152477
Merged-chr2-120579093-2	chr2	120578571	120579571	+	625.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	11400.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	8.11317700564232	7.88972365273433	7.50484348455803	7.7123772896786	8.19877563830934	7.26857617167467	-0.10096927588919	0.750360062662587	0.937550343416037
Merged-chr5-113622347-3	chr5	113621870	113622870	+	879.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	21233.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.36301965202263	3.86235857499053	4.42804660408922	4.3264645787151	4.14976330869527	4.53351311008209	0.272219595418145	0.592804979376487	0.878261820522927
Merged-chr11-3913362-3	chr11	3912838	3913838	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	1326.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	4.64581604570882	4.64622708384147	4.91411313642559	4.54258163375428	3.97772840908728	4.49564791358771	-0.945066597780679	0.0475132234931177	0.276115265630568
Merged-chr9-108340085-4	chr9	108339588	108340588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001329528, exon 3 of 3)	exon (NM_001329528, exon 3 of 3)	1008.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	8.32254976741691	8.47466982382819	8.24166954239266	8.35788390017806	8.65736523257457	8.46441470288182	0.207889213420196	0.339374031078362	0.7291905794032
Merged-chr15-95821380-2	chr15	95820875	95821875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	ORR1A2|LTR|ERVL-MaLR	8697.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.13335580901866	7.23022798322959	6.83438757181568	6.96932050658562	7.0451499137785	6.64472557669529	-0.269672698916923	0.32087161725982	0.714648154651698
Merged-chr4-63823347-4	chr4	63822841	63823841	+	955.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	37943.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	3.18592391686406	3.07468490699194	3.45787195808788	3.27085229276734	3.26523863198279	3.25801434638977	0.0979151586669417	0.877609375758564	0.971669595710979
Merged-chr19-60598422-4	chr19	60597921	60598921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17398.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.93460171283999	7.17550080589407	6.78840193984353	6.91778872544196	7.2907519909108	6.75008809812095	0.0547706005786586	0.847508327563842	0.964318271116593
Merged-chr12-3859672-2	chr12	3859172	3860172	+	613.833313	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 4 of 4)	non-coding (NR_045884, exon 4 of 4)	2572.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.99812749965647	3.76557506446243	3.92035267635375	3.96279687436542	3.70398395672388	3.8392400028984	-0.192325154142702	0.713588804936842	0.92557476402444
Merged-chr13-33953114-3	chr13	33952627	33953627	+	692.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-11532.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	4.14931837385098	4.7247344011312	4.71212134614323	4.75936464299591	4.80488870147704	4.44499418322023	0.31364232711115	0.50594057382955	0.838203647443267
Merged-chr7-99375841-2	chr7	99375340	99376340	+	951.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5678.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	3.4911351991358	3.63867969145464	3.50420309641231	3.54194681047609	3.38322628612448	3.52032872679569	-0.25593953345018	0.655779921604128	0.904416086003286
Merged-chr5-148594885-4	chr5	148594391	148595391	+	717.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42103.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.23004753812243	4.19293821533603	4.20473160827504	4.52946720582607	4.35416316173576	4.53439318060392	0.685681616614777	0.124596202044632	0.472297425161941
Merged-chr6-129351330-4	chr6	129350825	129351825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 1 of 5)	RSINE1|SINE|B4	1081.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	7.48683718838618	7.2010012424944	6.69685856061014	7.61556643908547	7.66498366603131	7.22033123240102	0.501989905403236	0.097697941764737	0.416863255133595
Merged-chr1-172350792-1	chr1	172350292	172351292	+	662.0	f1_balb.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	9582.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	3.38845957241508	3.35559417861149	3.76655890723164	3.50384960065368	3.18087861268424	3.25806598897069	-0.716845912793192	0.258772210649715	0.656295597544882
Merged-chr19-6481602-4	chr19	6481118	6482118	+	894.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 10 of 22)	intron (NM_001205234, intron 10 of 22)	61452.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.34868639780842	2.89522471101817	3.16153027517974	3.00057198472078	2.78419991830519	2.87017410828775	-1.22711936565027	0.0903160475382175	0.399586201071941
Merged-chr10-34190688-1	chr10	34190188	34191188	+	663.0	f0_balb.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	16863.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.25109583453147	5.18963294150261	5.4942213332354	5.87698336425767	5.7680936492073	5.84392820842796	0.984917655667915	0.00256604098321624	0.0374259663683536
Merged-chr4-128723787-2	chr4	128723287	128724287	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3784.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.58400257323302	5.42026453064352	5.5246214922694	5.62161336974562	5.51305838586326	5.44004159018757	0.0373198104164152	0.909042864207111	0.979384717565381
Merged-chr17-55718864-4	chr17	55718304	55719304	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6168.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	5.16672243355862	4.94217795760139	4.54722560757979	4.69330348691573	4.72063234118825	4.7030570383222	-0.489150957347845	0.248963485677511	0.645913997139385
Merged-chr10-7211622-4	chr10	7211130	7212130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	CpG	607.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	7.59091890088844	7.85220781949721	7.64204484018841	7.38013239182747	7.37296306491816	7.34433588589995	-0.491307772424394	0.0316648543625856	0.215752473124961
Merged-chr17-25728484-2	chr17	25727984	25728984	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028009, intron 2 of 5)	intron (NM_028009, intron 2 of 5)	767.0	NM_001357176	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	3.42199261601118	3.51573936975486	3.43463340979245	3.6001174653839	3.43685182535601	3.56055613100787	0.261986485288337	0.64799481315789	0.901644689184644
Merged-chr6-38939273-4	chr6	38938766	38939766	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	20280.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.85878356989411	7.93055289796252	7.43705562733859	7.70429355582576	7.98707476140319	7.50490348383369	-0.0173002144036982	0.948073480895396	0.988044570943882
Merged-chr6-125095344-2	chr6	125094844	125095844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	-637.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	4.91845200136193	4.73620893582324	4.84882171503412	4.8479122484538	4.83297435338044	5.11968973503809	0.210391995229448	0.590743176489252	0.877301111216348
Merged-chr13-55445139-4	chr13	55444634	55445634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286063)	promoter-TSS (NM_001286063)	62.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	6.82701507595975	6.66941617415491	6.87320113887606	7.08761524951918	6.82758217687212	7.02686132199098	0.296852853242224	0.243568823667983	0.640776628186919
Merged-chr12-73681940-4	chr12	73681416	73682416	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	97120.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.52605440263724	7.42605437750443	6.99355781014633	7.1658277314087	7.32761166038236	7.05173942708424	-0.226580166931657	0.395262101755627	0.772603748335226
Merged-chr10-44449965-6	chr10	44449498	44450498	+	898.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	8750.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.15910328277863	5.27228544781803	5.25368934865142	4.9520456741824	4.89370129134016	5.51449673823554	-0.190048152320694	0.6305358603211	0.894734411238057
Merged-chr11-50430342-4	chr11	50429793	50430793	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172557, intron 1 of 17)	intron (NM_172557, intron 1 of 17)	818.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	7.32218834133729	7.27077620616704	6.77548257587315	7.10693947069333	6.87777914515982	6.55206495099144	-0.428089602293739	0.149182924230226	0.51537803021029
Merged-chr7-16097157-4	chr7	16096642	16097642	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347559)	TTS (NM_001347559)	-1438.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	3.64395117769255	3.55241340816968	3.61255540472199	3.56771726230733	3.58762020861454	3.97322093672958	0.376336666012416	0.505890288238279	0.838177729332582
Merged-chr15-25412690-10	chr15	25412178	25413178	+	980.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	CpG	1086.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.36175489993182	6.44038525315992	6.08939284921006	6.50827610516987	6.39318837586921	5.87282856848245	-0.0246742229754104	0.938636524459292	0.986515091506254
Merged-chr4-150798948-4	chr4	150798434	150799434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54862.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	6.13211109158482	6.43947860148772	6.22665683235255	5.89851445984467	5.63733299064309	5.80917078838139	-0.858492900037305	0.00473604949685113	0.059026727874272
Merged-chr18-56756281-4	chr18	56755771	56756771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48458.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	7.55227195509178	7.93975857645302	7.43735842959322	7.61393486730077	7.79249350619457	7.51551199230635	-0.0268736084798251	0.916400274591787	0.981249307342287
Merged-chr10-26798162-3	chr10	26797654	26798654	+	970.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	25642.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	8.13618680967442	7.97897594989453	7.89679598765442	7.63216268669501	7.72831269147635	7.38695577020563	-0.591003356978588	0.0112767823050279	0.109475965702574
Merged-chr1-134435629-4	chr1	134435134	134436134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19897.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	3.22308102543416	3.13888535153267	3.06568134843753	3.04371588773553	3.14640566223962	3.47008246041827	0.332704318155116	0.614777525325575	0.887604253319171
Merged-chr3-108653928-4	chr3	108653424	108654424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145543)	promoter-TSS (NM_145543)	-3.0	NM_001355632	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	6.96725837398125	6.7251358494822	6.77168140400045	7.02879524775358	7.02474237586994	6.83034028529943	0.218495276982103	0.388905709697302	0.768781380496339
Merged-chr4-132975088-4	chr4	132974578	132975578	+	701.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	983.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.51494794270988	6.44268191009975	6.53902687752729	6.57104174636487	6.55985133572121	6.66424181230243	0.158270389798852	0.539929852454412	0.856214800885678
Merged-chr5-146797298-2	chr5	146796811	146797811	+	869.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2355.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.79142768650862	4.10464327874715	4.27973885931208	5.18039620906673	5.0760120546104	4.82223026675088	2.47560429584436	1.75847312574692e-07	1.17242813980088e-05
Merged-chr16-25064112-2	chr16	25063612	25064612	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	4473.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	2.40062911550125	2.49727430010242	2.61899411671107	2.54229865726212	2.50189916787078	2.43893026858332	-0.0504791893753697	0.94928258804519	1
Merged-chr15-27659784-4	chr15	27659273	27660273	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 5 of 6)	intron (NM_198301, intron 5 of 6)	21769.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.07459368910903	4.41593890817169	4.67801770079865	3.78501403608744	3.98770543496031	4.05245448470499	-1.29039855633562	0.013267449807463	0.122362886674726
Merged-chr17-74459206-4	chr17	74458705	74459705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033367)	promoter-TSS (NM_001033367)	-97.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	7.56381741991486	7.81665196165534	7.37119869114616	7.65842172525215	7.9870306835846	7.45069832217098	0.178541438813821	0.504239855146779	0.837539115920757
Merged-chr14-18239241-4	chr14	18238706	18239706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011584)	promoter-TSS (NM_011584)	-100.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	9.00347556217781	8.96908490942127	8.41053877206125	8.56420386722562	8.71840396160774	8.39950140021539	-0.354273449838566	0.157442417712489	0.52874937869134
Merged-chr14-121381977-4	chr14	121381477	121382477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.98916755752273	5.05065347748346	5.32201773913103	4.93184303910646	4.98402637724007	5.23628034618885	-0.146843081037463	0.698522065659383	0.920383812475161
Merged-chr5-125441952-12	chr5	125441389	125442389	+	847.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029752, exon 1 of 3)	exon (NM_029752, exon 1 of 3)	321.0	NM_029752	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	3.80710053945442	3.59107047394721	3.75986498129331	4.06339212735788	3.5603578380296	3.49526789014143	0.0450781478260986	0.93906984101719	0.986604659958455
Merged-chr13-90923045-7	chr13	90922544	90923544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024175)	promoter-TSS (NM_024175)	-78.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	7.41150863622958	7.79493110641648	7.6125910877286	7.66660369450324	7.8954146504252	7.41411756479316	0.0943658844869434	0.713885660265943	0.925624053657378
Merged-chr17-26514017-2	chr17	26513518	26514518	+	862.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5546.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.53666604325067	4.45914755677185	4.39431918303193	4.1125831994893	4.19584071680538	4.41869994466417	-0.59911968673362	0.18527093027894	0.569470877644115
Merged-chr3-95239775-2	chr3	95239275	95240275	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024841, intron 1 of 1)	intron (NM_001024841, intron 1 of 1)	1334.0	NM_001024841	229588.0	Mm.387177	NM_001024841	ENSMUSG00000068860	Gm128	Ment|pmis1	predicted gene 128	protein-coding	2.58964371211242	2.66968287895849	2.91233222213858	3.03366821314028	2.87151518848714	2.98527397238573	1.22698631106739	0.0970808849205031	0.41548741243006
Merged-chr4-109143602-3	chr4	109143105	109144105	+	885.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-5692.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.84362424105353	5.89503257754513	5.78715973587493	5.29974467455581	5.12362640115068	5.24325224543016	-1.19560865296964	0.000253834588461164	0.00608851785433166
Merged-chr2-155473882-4	chr2	155473381	155474381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-33098.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	6.55622224851028	5.57540516488216	5.92838185419788	6.34621103853796	5.65490524310592	5.78476931061431	-0.215164433815925	0.600279684750377	0.881562830647152
Merged-chr14-61440072-4	chr14	61439575	61440575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008466)	promoter-TSS (NM_008466)	-128.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	7.51836683785541	7.34699766315416	7.2046559179377	7.59297769805579	7.09343685074388	7.01100205340773	-0.153590245070532	0.579272005982135	0.872462532559126
Merged-chr5-36751842-4	chr5	36751324	36752324	+	970.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3145.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.51078879351812	3.44547016921511	3.49260565853029	3.36253827193965	3.25052519367383	3.50964891546101	-0.428870503986437	0.468667754695633	0.818694631884688
Merged-chr18-84859622-4	chr18	84859127	84860127	+	917.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	(CCCCCA)n|Simple_repeat|Simple_repeat	8289.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	4.22618907437196	3.99045177309486	3.8032273683786	3.66704049071472	3.81696079324613	3.97571213023252	-0.625864577887877	0.242062844439825	0.639144323406679
Merged-chr5-30897966-3	chr5	30897477	30898477	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8643.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	5.01275330059351	4.47637679031506	4.82106277403441	4.73573891305973	4.65314867420009	4.95712014896929	-0.0197266646379737	0.963470598352275	0.991116725160803
Merged-chr16-33917244-2	chr16	33916744	33917744	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49794.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.54997807722355	5.52623895448329	5.91027024254695	5.26532061053733	5.48376747448949	5.8825454195605	-0.196507044981227	0.590102558881282	0.877100187719802
Merged-chr11-94404812-4	chr11	94404304	94405304	+	906.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11828.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.90967960627545	3.6227512927946	3.68752335014292	3.60537144354005	3.16481634363604	3.30284287924659	-1.38186516299828	0.0277086344181198	0.198730598085861
Merged-chr15-67173287-4	chr15	67172804	67173804	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	MER44A|DNA|TcMar-Tigger	3578.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	7.01086702491826	6.89316523309549	6.73455588166839	6.73774280637113	6.9715540394015	6.66150362186532	-0.12999541342018	0.621531953122113	0.890787170459802
Merged-chr18-34331099-4	chr18	34330600	34331600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025527)	promoter-TSS (NM_025527)	-45.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	8.29291548145494	8.653472861447	8.27694113389601	8.58397470332441	8.7104876378282	8.19996498563902	0.136719052824996	0.582855016076733	0.873826743013405
Merged-chr1-80389798-2	chr1	80389298	80390298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49108.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	3.42232896495812	3.06258648683178	3.28219705203756	3.44330767431163	3.3310732472658	3.72117045283317	0.911615189694928	0.154831502562831	0.524112919134617
Merged-chr5-39852825-1	chr5	39852325	39853325	+	568.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-208194.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.10429964925767	3.20665399558726	3.26159092905232	3.63461053598678	3.16533425560852	3.27607981191861	0.738634695834848	0.253720275238582	0.651117231535132
Merged-chr11-59557103-2	chr11	59556603	59557603	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 6 of 9)	intron (NR_153314, intron 6 of 9)	14417.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	5.34223302749475	5.69671379087664	5.38241695810467	5.40670873707435	5.70337081064164	5.64807296880238	0.194969328097057	0.573137845120917	0.869962295500663
Merged-chr17-30137314-4	chr17	30136809	30137809	+	908.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151442, intron 2 of 3)	L1M3|LINE|L1	132270.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.18150954656665	4.21932802504285	4.28217502881455	4.11133993972723	4.06190768636902	4.26185756565433	-0.237942258317565	0.609693557292308	0.885308220347415
Merged-chr6-86522677-2	chr6	86522177	86523177	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3512.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	3.51518706497402	3.34351650429033	3.78073308546664	3.44977952883907	3.65276278030843	3.54728087935708	0.0190725678082027	0.974312754454398	0.994276686350905
Merged-chr10-98517817-3	chr10	98517316	98518316	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-165949.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	3.12621241606956	3.24196541322588	3.21324593916506	3.1584001028799	3.09724146692223	3.44655017531477	0.167950437854023	0.793539437303586	0.95047905539387
Merged-chr3-8931152-3	chr3	8930653	8931653	+	834.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025261, exon 8 of 8)	exon (NM_001025261, exon 8 of 8)	-7296.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	3.61582935223406	3.42617558270108	3.64971774217878	3.23546429362525	3.2278810954415	3.46066791774198	-0.998742387816637	0.0992088312898138	0.419993306230619
Merged-chr10-6716400-2	chr10	6715900	6716900	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42193.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	5.68951499477011	5.45863315928781	5.39372329676226	5.83812583421258	5.47180062688303	5.45779725285597	0.144331425327981	0.676490288636988	0.912525597578286
Merged-chr6-42424701-4	chr6	42424214	42425214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9821.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	5.31574534931351	5.11451548644108	5.08562413713171	4.9930323697141	4.94367473034092	5.18331414704194	-0.305317892672405	0.407346609775213	0.781483992042557
Merged-chr17-64621222-2	chr17	64620722	64621722	+	595.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	19573.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.90083033461571	4.70730075223489	4.68137990799059	4.71320171953212	4.58937959920474	4.82433411405071	-0.157099966093514	0.698480217551162	0.920363937765204
Merged-chr17-67334497-3	chr17	67333995	67334995	+	989.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	19964.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.88402859721311	4.0437818207128	4.05914078789583	4.51993523128906	4.22619434994999	4.48347801586056	1.15077578319743	0.0163733995831857	0.141225026694073
Merged-chr8-41600471-4	chr8	41600057	41601057	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183439.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	3.44672228671475	3.4550931470032	3.78314515435797	3.32010020450921	3.0705215744298	3.16291174533551	-1.51386808083143	0.0189023624050431	0.155571490702159
Merged-chr6-65144793-4	chr6	65144280	65145280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-50.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	8.60675374625682	8.69236315559733	7.97036577264374	8.01958520069096	8.43869737272741	7.62420615175235	-0.54060425558313	0.0812701626776776	0.377154899019943
Merged-chr2-70661439-4	chr2	70660931	70661931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-78.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	7.50827488344888	7.16543949688249	7.08156064826827	7.10805299919531	6.76911894776845	7.10075956316995	-0.415003716421378	0.123813471554306	0.470960975592717
Merged-chr5-52760573-3	chr5	52760121	52761121	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028744, intron 7 of 9)	intron (NM_028744, intron 7 of 9)	-14788.0	NM_001309445	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	3.9016651760738	4.34900491025329	3.86331744334636	3.98854901330593	3.42013870410323	3.59893572715167	-1.15508753702167	0.0551477444214155	0.301830791147612
Merged-chr1-63176775-4	chr1	63176393	63177393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160039)	promoter-TSS (NM_001160039)	62.0	NM_018796	55949.0	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	7.57334870944502	7.6630795077649	7.36038488808189	7.64286895550765	7.78046984416607	7.6336472835508	0.210573622819223	0.361051758140831	0.747007352397798
Merged-chr14-63145496-3	chr14	63144940	63145940	+	933.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	22978.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.23217119392318	5.53726209899716	5.66720566340833	5.33843015452567	5.10116283708481	5.46365703891655	-0.363517943191002	0.317106138575677	0.711036676253037
Merged-chr9-124068581-3	chr9	124068085	124069085	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33598.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	5.80165442624001	6.13887749924157	6.13425276062409	6.19275123473327	5.78276887569879	6.45498407593611	0.220918230042462	0.512903602982467	0.842184173595759
Merged-chr15-67481906-4	chr15	67481393	67482393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255124.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.32401601514615	5.14326003484614	5.34365210180943	5.51271078490747	5.56403121647598	5.49630500753122	0.505097670355351	0.131929009424693	0.485753750883217
Merged-chr9-105394719-2	chr9	105394219	105395219	+	638.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357902)	promoter-TSS (NM_001357902)	568.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	4.20770759630777	3.96887456769899	3.71347121991938	3.80717678575191	3.91167308737822	4.04412319191046	-0.20081682455802	0.706879125154652	0.923161381966479
Merged-chr10-44634915-4	chr10	44634393	44635393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176145.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.04822113623799	7.33309592077748	7.25258306171023	6.94868943161916	7.06112901025811	7.36437997316967	-0.130181438780914	0.614980090660313	0.887675470332189
Merged-chr4-118135570-4	chr4	118135054	118136054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-608.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.08240804209246	7.39004674944902	7.27248119071495	7.28435945452513	7.60566644683288	6.90538645887484	0.0816361008232108	0.774044193232942	0.94425470583833
Merged-chr10-61149804-2	chr10	61149304	61150304	+	554.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	2.16593039735539	2.17079831046074	2.11316604246286	2.26134415304537	2.10081846464871	2.51260148093927	1.00731817832763	0.265046847298117	1
Merged-chr17-15706154-4	chr17	15705659	15706659	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	1192.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	7.47751472525944	7.73797684892114	7.59045491020636	7.51555694508663	7.79026353054333	7.7888612708972	0.140355210918515	0.55063794716687	0.860709619458349
Merged-chr7-43660156-4	chr7	43659659	43660659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	2.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	6.56517395117478	6.59219575097141	6.6879329767169	7.02635197176575	7.16316258040782	7.26403105201824	0.833622565771555	0.000781115597669801	0.0149101013018134
Merged-chr7-143020933-4	chr7	143020432	143021432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110354)	TTS (NR_110354)	15273.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	7.48519175935415	7.30962593952677	7.35012602995189	7.56246041838831	7.98094861508318	7.39619435158832	0.433127460031886	0.0984944957143396	0.418438170090818
Merged-chr7-16100664-4	chr7	16100161	16101161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2081.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	6.09335834275594	5.929430451478	6.01707392520528	5.91144669089379	5.92122352155939	6.22424852806971	0.00384011169464013	0.989797585330304	0.997611022725407
Merged-chr3-59265054-4	chr3	59264558	59265558	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177855, exon 36 of 44)	exon (NM_177855, exon 36 of 44)	-2073.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	6.64201457151303	6.73318898564802	6.49251446860648	6.45003179968065	6.54448771507194	6.25602456001213	-0.321218728852654	0.238848080067545	0.635543188457686
Merged-chr14-27114826-4	chr14	27114305	27115305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29188.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.32969901081283	5.35267339850311	5.34792042728804	5.3069259896106	4.72173683777676	4.72704755473268	-0.808679898429155	0.045483264061111	0.26930436162134
Merged-chr4-139206915-2	chr4	139206415	139207415	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	12804.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.49328631328118	4.15868384631379	4.64176444766972	4.78956823340421	4.71409207377882	4.85576814483936	0.839617424669089	0.0550785596642875	0.301531468685179
Merged-chr9-40761625-3	chr9	40761117	40762117	+	776.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39656.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.38489510936717	5.49388222091455	5.45892789662211	4.4167655727265	3.9342735922813	4.32041819538444	-2.95460302002109	6.39986884223052e-11	8.86057049291709e-09
Merged-chr2-163617661-2	chr2	163617161	163618161	+	943.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131225, exon 4 of 4)	non-coding (NR_131225, exon 4 of 4)	10449.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	3.26413872532927	3.23648171241517	3.61481405801326	3.14361723106701	3.02682534568804	3.63583852951667	-0.341083528001331	0.618109944413261	0.889144807667841
Merged-chr5-105565044-2	chr5	105564544	105565544	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	45573.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.16858865056265	3.17333600026536	3.2236094316088	3.29011686089061	3.26783969979324	3.23768881205913	0.33082306381036	0.592008410906004	0.877880937493524
Merged-chr7-132858406-3	chr7	132857884	132858884	+	850.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	-841.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	4.54683113656761	4.55093194186025	4.92746480929744	4.59083743668152	4.5658414702753	4.81950103050816	-0.0462580915257579	0.913741441551733	0.980796798598326
Merged-chr5-135544585-3	chr5	135544080	135545080	+	731.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	542.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.48505560158512	4.87667680547538	4.5306483483798	4.67648354499876	4.6449837836828	4.55516327916327	-0.0523580720864834	0.902893359752238	0.977642957060409
Merged-chr1-86501768-4	chr1	86501273	86502273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24784.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	2.79468372330123	2.62768757112196	2.79164829382301	2.6157590208679	2.63539562546315	2.7430146867507	-0.409060613694019	0.581883097483156	1
Merged-chr2-181581874-4	chr2	181581337	181582337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164597)	TTS (NM_001164597)	136.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	8.01640718521777	8.39174233314356	8.17286921593217	8.17025680402215	8.39333319059584	8.13389920687938	0.0521434735607431	0.821042694833784	0.957942312428027
Merged-chr13-96543522-3	chr13	96543042	96544042	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012048)	promoter-TSS (NM_012048)	807.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	6.72734993559479	6.67455193253907	6.45782802473342	6.65854731548543	6.47591601627607	6.40297604607772	-0.180906489468214	0.502964091591797	0.836691193058519
Merged-chr3-26866787-4	chr3	26866314	26867314	+	981.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029150, intron 5 of 10)	RMER19B|LTR|ERVK	229183.0	NM_027583	70862.0	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	3.39871541880865	3.64627746426093	3.68904433018976	3.53161436112116	3.33168629330385	3.70856946769656	-0.202643520471261	0.732237619538942	0.931723932448277
Merged-chr15-95849965-4	chr15	95849480	95850480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-19908.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.35519224544932	7.53350869589186	7.25870905939874	7.78544254710865	8.00010872518358	7.38687488900014	0.532936807132283	0.0436238606669271	0.26245390679205
Merged-chr7-63897683-1	chr7	63897183	63898183	+	568.0	f0_balb.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-19174.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.76261038255601	6.20435579940076	6.07407251794119	6.02837087597038	5.96250866578134	6.23728117482131	0.0797089564446882	0.79909965556922	0.952192623704135
Merged-chr7-99159326-1	chr7	99158826	99159826	+	1000.0	f1_balb.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-18182.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.36741693467785	3.12911542353064	3.0876602918203	3.05145269962821	2.93345613425413	3.21874041274788	-0.603033676959192	0.368545901761859	0.753494886798671
Merged-chr8-56071011-4	chr8	56070506	56071506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	RLTR28|LTR|ERVL	130181.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	4.31142513193007	3.86626612202153	4.04021373211753	3.8343884509977	4.35400196581319	4.203535960621	0.182961234114181	0.731340097898679	0.931363959034745
Merged-chr12-31950440-4	chr12	31949957	31950957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361928)	promoter-TSS (NM_001361928)	-212.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	8.03814297407048	8.44810386611185	7.80471876898894	8.14217392080091	8.37695347289356	7.72353176961537	-0.0217546099132243	0.939467806860901	0.986720663284284
Merged-chr1-185350528-2	chr1	185350026	185351026	+	799.0	f0_balb.idr|f1_balb.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12518.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	4.02703914201139	4.13935195896197	3.77595643598517	3.13683064412432	2.95593132716929	3.13249330600447	-4.49327626376791	2.63390277077863e-07	1.67044040968711e-05
Merged-chr8-94778678-4	chr8	94778140	94779140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	6460.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	5.29841188918206	4.99130560772102	5.23700166259802	5.13629153401874	5.24228370151941	5.30043155250517	0.0962333171262396	0.789827821068123	0.949311112850285
Merged-chr14-60290193-2	chr14	60289697	60290697	+	653.0	f0_balb.idr|f0_c57.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	24992.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	5.64676680165463	5.81233594524806	5.47596825342277	5.62555250134528	5.8195635515805	5.88827048889199	0.214325162293653	0.508803776555091	0.840027473552967
Merged-chr12-85385898-4	chr12	85385397	85386397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11180.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.94959249036401	7.84137187408007	7.47594848111963	7.61768637436804	7.7450980572276	7.51138039980525	-0.21195616628808	0.389693664323786	0.769291741623303
Merged-chr2-51304915-3	chr2	51304409	51305409	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63078.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	4.50270054265777	4.85373549719083	4.54626272282923	4.77414141287932	4.55224228908989	4.28923923461179	-0.214169928416095	0.63595531173321	0.896845407499567
Merged-chr2-172440511-4	chr2	172440014	172441014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-64.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	8.27053475033569	8.61304235330548	8.45026677918818	7.71036517927352	7.94057475490138	7.75355827693504	-0.907657556980492	6.75674928036579e-05	0.00203035684452822
Merged-chr10-30380710-3	chr10	30380209	30381209	+	944.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180169.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	2.5269404850676	2.2116169262964	2.34461650851078	2.41591931620257	2.24883151953071	2.67168346991211	0.520652233663516	0.552500608114795	1
Merged-chr13-43560280-4	chr13	43559773	43560773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-82.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	7.80501188627554	7.55330419533956	7.41874228292259	7.76615454175795	7.81751969173828	7.35106251051873	0.0897473305478506	0.728576939548515	0.930478966998914
Merged-chr12-101913150-4	chr12	101912636	101913636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028446)	promoter-TSS (NM_028446)	35.0	NM_028446	109181.0	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	7.57375890335195	8.06392187768947	7.54182942491822	7.67154978056084	7.65490476114678	7.38489382462685	-0.253013342704818	0.338070900593828	0.728000347830431
Merged-chr10-8241608-2	chr10	8241108	8242108	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277217.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.20740369422862	3.79070840141947	4.08242207923437	4.16433616400284	3.70952770650815	4.19595420316107	-0.00743803299238613	0.989068847880695	0.997508825363283
Merged-chr2-30269444-3	chr2	30268864	30269864	+	732.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	B4A|SINE|B4	2545.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	5.2459065853484	5.39655622316164	5.5666352208832	5.18297100522513	5.14275483085842	5.2207179573296	-0.445008120894955	0.204417766851831	0.594949662456522
Merged-chr11-60934528-2	chr11	60934028	60935028	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	2471.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	5.06105933307836	5.17471120443118	5.24165465931398	5.06060299881515	5.21345269619018	4.84475773921508	-0.198721425076402	0.596766555706614	0.880046639147099
Merged-chr7-144923167-3	chr7	144922673	144923673	+	824.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357868, intron 4 of 4)	intron (NM_001357868, intron 4 of 4)	8073.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	3.1274108583481	3.33767497667202	3.57096852712283	3.42632520008841	3.61285986617846	3.69047467147415	0.853141162345794	0.167199903414133	0.542841690952394
Merged-chr8-61931343-4	chr8	61930850	61931850	+	930.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293783, intron 1 of 37)	Lx7|LINE|L1	3263.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	4.38795763061381	4.41744891883398	4.37708453054115	4.57669813332869	4.27347396711265	4.72475289058169	0.331631777098638	0.460570040825564	0.814549218123999
Merged-chr5-118245122-4	chr5	118244609	118245609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172998)	promoter-TSS (NM_172998)	-84.0	NM_001109902	269695.0	Mm.320042	NM_172998	ENSMUSG00000032850	Rnft2	AW049082|B830028P19Rik|Tmem118	ring finger protein, transmembrane 2	protein-coding	6.14063153726332	6.62097180102871	6.13402570667355	6.26348074136255	6.24764058087995	5.9581731337582	-0.262223152210829	0.406640372823854	0.78093872508891
Merged-chr17-37542505-3	chr17	37542012	37543012	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	12555.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	2.66851456080055	2.63017304474268	2.70652301992833	2.87414861144602	2.69614831639195	2.90205822800419	0.828009166565691	0.258770045318921	0.656295597544882
Merged-chr9-118697077-2	chr9	118696577	118697577	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-14615.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.99593812033183	3.1134937225675	3.70441559059932	3.13848181712633	2.75864453329357	3.44154395055979	-0.640400549355613	0.41034174041496	0.783182022179286
Merged-chr3-95624342-1	chr3	95623842	95624842	+	651.333313	f0_c57.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-638.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.70884345566768	6.83619868597251	6.75220359899033	6.91576342874158	6.92489942635489	6.66496232375946	0.125615446509618	0.622090444157442	0.890937721901588
Merged-chr14-70107188-4	chr14	70106694	70107694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7101.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	5.85629216897327	5.76649661655422	6.24985336862281	6.05567032725626	6.06030008159753	6.46823005918815	0.407040027771918	0.211994857358293	0.604420229358776
Merged-chr15-36695742-4	chr15	36695236	36696236	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-86763.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.13329278907712	3.65869280091544	3.86373100984877	4.01821504632572	3.67453260435466	3.77737716359913	-0.225155774377998	0.685573995987542	0.916331487430729
Merged-chr18-89159492-1	chr18	89158992	89159992	+	590.0	f0_c57.idr	Intergenic	Intergenic	-37935.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	2.82877980466337	2.64876069556775	2.87895627289468	3.11850130663219	3.16888809105375	3.07450632312416	1.67618080687225	0.0194870216064624	0.158688206481751
Merged-chr5-123391552-4	chr5	123391047	123392047	+	949.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-3251.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.46585512598615	5.07755143370009	5.01470171053571	5.46740824282232	5.06077701381413	4.92617698160307	-0.0653884709800959	0.871373506318763	0.970222087171093
Merged-chr9-118619130-4	chr9	118618628	118619628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	12419.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.85164136844004	6.84575504626939	7.05971696801769	6.4816833529365	6.53225378464566	6.22543934097859	-0.767819512127742	0.00449274549345701	0.0568013145262019
Merged-chr1-40322750-4	chr1	40322252	40323252	+	834.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	4.80880311456053	4.90392366167492	4.4553645039823	4.46245355116319	4.43064486418756	4.84538390177131	-0.388767289129686	0.382724670871048	0.764145276876741
Merged-chr1-155471541-3	chr1	155471050	155472050	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54106.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	4.18540522946814	3.83621190291931	3.71039553433813	4.07336429700226	3.92683171629099	3.89219932316432	0.0967537608462545	0.85657858872668	0.966557736209816
Merged-chr6-34865984-2	chr6	34865484	34866484	+	883.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2838.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.39302614014078	6.29482367008035	6.05919706768838	6.32534059707321	6.41893101914542	6.07347261339455	0.0428154414463272	0.884288853211606	0.973466734537782
Merged-chr11-83703385-2	chr11	83702885	83703885	+	573.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-671.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	6.61385493760041	6.66112344846813	7.0929882208494	6.8372942906656	6.82898740601838	6.90810201496413	0.0937660283493417	0.731342745911546	0.931363959034745
Merged-chr10-34129159-1	chr10	34128659	34129659	+	677.5	f0_balb.idr	Intergenic	MIRb|SINE|MIR	-1187.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	7.67276788627078	7.47436077151434	7.34376799233085	7.38899996848746	7.73521646481902	7.35557213010889	0.00670541271855459	0.978834896875561	0.995160277495735
Merged-chr13-37537925-2	chr13	37537424	37538424	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192579.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.33746358158419	3.34044124290301	3.75983840143368	5.08429512178918	4.9998577612092	4.85258304822533	5.9152092606842	4.98817573638684e-11	7.0949765243295e-09
Merged-chr15-25910292-4	chr15	25909765	25910765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23287.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.70988245802799	5.10387685121407	4.91901657370771	4.56127812974522	4.91081368691535	4.71843182538474	-0.397377218100918	0.341468779554421	0.730861271883589
Merged-chr1-152521529-2	chr1	152521029	152522029	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	103688.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.93849361276388	3.24593150342842	3.4768711606042	3.06364788506459	2.99637191388299	3.17606511011603	-0.667002362552043	0.331202503854322	0.722596533854639
Merged-chr2-32570853-4	chr2	32570367	32571367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	9.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	7.1619208910434	7.29351146983222	6.89494526720458	7.23784665578974	7.21104667338948	7.02526272495996	0.0440506423187264	0.86220411983996	0.967996224966109
Merged-chr13-99030787-4	chr13	99030302	99031302	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46237.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.93879863796163	3.9075174319951	4.09021256817526	3.82331727759453	3.83547504490018	3.87314143351528	-0.411800515286835	0.41565673610277	0.78656116488557
Merged-chr2-181691815-4	chr2	181691331	181692331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291205)	promoter-TSS (NM_001291205)	-14.0	NM_001291205	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	4.63315935280011	4.67400686904829	4.87477139464604	4.86240358314755	4.94616070366579	5.20159816050057	0.626825784949682	0.114033500742699	0.450931448046693
Merged-chr9-35123194-2	chr9	35122694	35123694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-6330.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	6.22216717082877	6.28207570967848	6.56279281073865	6.34848986662114	6.43705157931603	6.80247538843826	0.293031145063886	0.321091896598251	0.714713352205534
Merged-chr16-23985542-4	chr16	23985050	23986050	+	963.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	3302.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	5.78062457884981	5.85658454627458	6.06301462042924	6.17120607205596	5.78315115945425	6.18529179420374	0.265891027627661	0.401929067937749	0.777823507457637
Merged-chr15-74992840-3	chr15	74992299	74993299	+	912.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5232.0	NM_001271417	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	3.76280203729374	3.48261455532768	3.72545348533057	4.24581714595322	4.68459896063754	3.91336221399792	2.02005514102556	0.000403388237008231	0.0088422361498896
Merged-chr3-15277222-4	chr3	15276700	15277700	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	55102.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.34918482884302	4.61857315971182	4.52016428806496	4.39992214446182	4.57245530120408	4.81465776042209	0.240392525941548	0.584747690901099	0.874704026960161
Merged-chr1-173430538-4	chr1	173430050	173431050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	ORR1F|LTR|ERVL-MaLR	9946.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	6.26877593677654	6.0108640545723	5.90933571532238	6.30124226782862	6.48800662184033	6.22531086887227	0.452177847872248	0.127287455761493	0.476932397628901
Merged-chr2-45108845-4	chr2	45108337	45109337	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	1440.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.43493800468599	7.27184556529304	7.65828503570859	7.74610746093978	7.50268694365602	7.70625591025997	0.284411774643544	0.241124325425377	0.638272980530469
Merged-chr1-93654171-1	chr1	93653671	93654671	+	620.0	f0_balb.idr	Intergenic	MT2B1|LTR|ERVL	-18444.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	2.99919896288667	3.00933651079506	3.29783108069371	2.98265674618451	2.77419170712984	3.2085200292796	-0.499549937949572	0.481030505434079	0.824895641073304
Merged-chr9-25150761-2	chr9	25150261	25151261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020586, intron 1 of 7)	intron (NM_020586, intron 1 of 7)	1020.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	6.28527303005286	6.42484910112253	6.71643631534166	6.49783574162594	6.53647777828976	6.87204245702753	0.259331105198642	0.372533566445681	0.75637531103441
Merged-chr11-50132321-2	chr11	50131821	50132821	+	924.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	intron (NM_029745, intron 1 of 20)	961.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	4.96331654967074	5.12555949564183	4.95524258416957	5.11786617517161	5.19455771912417	4.65227643553837	0.00875365047197776	0.982678105489568	0.996084390562607
Merged-chr6-86654696-4	chr6	86654183	86655183	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	14476.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.66523082250863	4.51993521057909	4.21570722259356	4.63276777044874	4.25800676353638	4.28623378948336	-0.213940712008197	0.650151282551652	0.902544402889903
Merged-chr2-73475850-4	chr2	73475340	73476340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	9913.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.12569150503291	5.88712132277838	5.7331928981232	5.56451675805399	5.8746341167828	5.76897137516362	-0.332690739303485	0.304243305860508	0.700796370947447
Merged-chr19-29253979-4	chr19	29253477	29254477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2174.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	5.90916235621751	5.8262441421416	5.96021709171432	6.06953285780083	6.25347192543062	6.23616933951602	0.507029679582086	0.0796631358011153	0.373249323033771
Merged-chr17-45575204-2	chr17	45574704	45575704	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1943.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.72159051652577	4.40312123606533	5.04975051968649	4.40268102193166	4.25734856766514	4.82239282538883	-0.566308593976653	0.239604175640911	0.636557606855969
Merged-chr14-103826530-4	chr14	103826031	103827031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17170.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.46379872819132	5.57227012466402	5.72998737357179	5.31378127106519	5.31227537444207	5.41360172011266	-0.467665248919283	0.160899645041302	0.53362579874035
Merged-chr11-5509340-4	chr11	5508854	5509854	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11287.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	4.79949879238023	4.75341426869827	4.77207407152448	4.89765811773171	4.96728169741135	5.120186332341	0.483205391827362	0.206570136073032	0.597168046498449
Merged-chr2-71392778-2	chr2	71392278	71393278	+	779.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	3518.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	1.79285050270902	1.6514524885537	1.76231543799206	1.92132454306784	1.80302818710041	2.04467707756063	1.71060723712484	0.10243352630116	1
Merged-chr5-64234357-4	chr5	64233850	64234850	+	937.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	L2a|LINE|L2	3993.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.18907557935513	5.89219739757679	6.24177185998498	6.42890831197686	6.30452737339835	6.35994178252922	0.425885722767432	0.139999737113683	0.500025673938934
Merged-chr16-33835724-2	chr16	33835224	33836224	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	6059.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	3.80235420796572	3.9073818737828	3.67778670550333	3.69282372087535	3.30832742868433	3.64120130536978	-0.866382901899621	0.135764584980615	0.492518955608463
Merged-chr7-80192499-4	chr7	80191992	80192992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	5651.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	7.00255382603501	6.97444860356621	7.32820357869785	7.06991420711976	7.00090584122806	7.09811694020353	-0.0733421627181594	0.770383387109102	0.943392092118189
Merged-chr16-31930961-2	chr16	31930461	31931461	+	893.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-2890.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	3.20351639960955	2.96715078773689	3.07511804110083	3.37878732254177	3.10697380392114	3.43184797791048	0.932139589588374	0.158426132745097	0.530219678764945
Merged-chr13-58996667-4	chr13	58996185	58997185	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	188988.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	5.78507767852961	5.99773288415854	6.2020687745848	5.97086108639011	5.89651007965039	6.22285867875628	0.0537391255793675	0.863771285181332	0.968269312109804
Merged-chr7-107599635-1	chr7	107599135	107600135	+	543.0	f0_balb.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	4584.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.03677169702526	4.16874654106406	3.75182662581467	4.10987846330165	4.06382360024463	3.82464512480867	0.0128305366159308	0.980568805969861	0.995512982807197
Merged-chr11-103413320-3	chr11	103412844	103413844	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	-680.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.66889919068087	6.82230309307242	6.43486325415175	7.00839668558618	7.0968016836611	6.43505002346932	0.359926626435637	0.236912061569882	0.633389416801297
Merged-chr10-70194559-2	chr10	70194059	70195059	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10105.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	4.28398765402249	3.954674966336	4.21547056007296	4.11340981597308	4.02161739154113	3.94821836865423	-0.359337068328688	0.467237905187067	0.817875647788608
Merged-chr5-93265661-4	chr5	93265164	93266164	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1909.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	6.26270925776599	6.32045730166147	6.51298023011084	6.55240107172625	6.65023166101411	6.8635341104608	0.526410944149217	0.0538784998000469	0.297703845631337
Merged-chr7-81763619-4	chr7	81763031	81764031	+	874.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025997, intron 1 of 2)	CpG	578.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	5.69258711818339	6.22767582975895	5.64761863689479	5.9733038594424	5.74597148430532	5.62392369844115	-0.183366831408235	0.601519255597386	0.881943853341137
Merged-chr16-77049488-4	chr16	77048993	77049993	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 4 of 23)	intron (NM_013918, intron 4 of 23)	35424.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	3.16445306513915	3.13723724125531	3.03615749392038	3.10422914208441	3.1844613420962	3.22633199171445	0.235113947108566	0.713877544725176	0.925624053657378
Merged-chr11-75540252-1	chr11	75539752	75540752	+	1000.0	f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	8140.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	5.83827477696658	5.93738061180863	6.17272743076072	5.78391411368726	6.0502662948427	5.9050201267038	-0.100729730845865	0.744713065100614	0.936032341688524
Merged-chr8-84989556-4	chr8	84989061	84990061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	6.13615483432598	5.80416920491366	5.69556367119671	6.01427570873037	5.91779935395173	5.91352563633692	0.082671544498313	0.793302056311051	0.950326484919661
Merged-chr19-10859485-4	chr19	10858972	10859972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 10 of 10)	intron (NM_133804, intron 10 of 10)	10307.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	3.6873426803229	3.227130347522	3.88506717872185	3.49781442219177	3.70567209946477	4.08409246630011	0.506429820668226	0.431250143940194	0.796772847876713
Merged-chr11-53931239-4	chr11	53930723	53931723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	5.20991135966592	4.82754231888771	5.15380763583907	4.8056314944931	5.12255294841842	4.86654841133746	-0.261816158747576	0.511761814984443	0.841538252232675
Merged-chr12-85383577-2	chr12	85383077	85384077	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8860.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.85413137341764	5.96864843316036	6.21761134479221	5.56292502780874	5.86805789954219	6.29565481743515	-0.140161245270862	0.6869455865591	0.916965854132552
Merged-chr1-152799608-2	chr1	152799108	152800108	+	970.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	-545.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	6.47573022844199	6.64520531448176	6.72582387060051	6.6249884680323	6.96589686412484	6.72203042613525	0.269985164615798	0.316794345297534	0.710777474639496
Merged-chr2-166060192-2	chr2	166059659	166060659	+	709.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 16 of 22)	B3|SINE|B2	67522.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	2.99864551595109	2.97490605688268	3.00884289558743	2.87303129690777	2.83495142260011	3.0806333128332	-0.315804250059538	0.644427603570775	0.900210434145893
Merged-chr3-27210429-4	chr3	27209932	27210932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	27428.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	7.84136976747817	8.06761688693813	7.41944509020465	7.69140861591458	8.19598682048009	7.4876353908484	0.0376911393904817	0.900082946817372	0.976728292075907
Merged-chr10-7063819-2	chr10	7063319	7064319	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40634.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	6.63540418716081	6.57489966625693	6.31655911929397	5.88563949186762	5.95597528399451	6.00946663572718	-0.963452654174669	0.000725536957640917	0.0140503507948901
Merged-chr10-13276540-3	chr10	13276063	13277063	+	990.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	47726.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	3.74407726542128	3.62588698418135	3.79305420989815	3.55214338803625	3.56781965370417	3.86157696550034	-0.202783601256608	0.713792785548833	0.925599802465018
Merged-chr2-133443634-4	chr2	133443122	133444122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108537.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.80960963364319	3.71047689106693	3.71227584511532	3.47267900779944	3.15470457288556	3.6277099937028	-1.17511017361652	0.0539700976247064	0.298031847833592
Merged-chr11-54028712-4	chr11	54028225	54029225	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-621.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	7.09073715338384	7.42203687948572	7.31489417184379	6.6075720489725	7.06382174001422	6.56185122163359	-0.764646855211746	0.00731793362280949	0.0807532674765651
Merged-chr19-4510270-4	chr19	4509777	4510777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162946)	promoter-TSS (NM_001162946)	-195.0	NM_001162946	18563.0	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	4.82281190234477	4.73910875888779	4.59935965738979	4.90637893675224	4.86612649321609	4.48758224529709	0.110453336307482	0.792234012329375	0.949929758256028
Merged-chr12-4907524-7	chr12	4907010	4908010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145441)	promoter-TSS (NM_145441)	10.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	7.7279859085662	7.94206971922973	7.56061921036928	7.96787108827431	7.74868599362049	7.81832994503326	0.12544414223573	0.593360384298455	0.87844954599148
Merged-chr2-163929049-4	chr2	163928564	163929564	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-10381.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	7.3316310798318	7.17029751259295	7.04977473575521	6.45536070387499	6.23956765402247	6.12393724469378	-1.42491527689967	1.28582062181491e-07	8.92331628857171e-06
Merged-chr13-35783174-4	chr13	35782681	35783681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	41779.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.99092029779663	6.12386995921272	6.03994130287549	6.17213644353724	6.26811823242353	5.80243859843475	0.0967527489705858	0.751874271868216	0.938016588905039
Merged-chr5-107708469-4	chr5	107707971	107708971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4991.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	3.63534704859548	3.5195600930529	3.74867525757888	3.50646649271623	3.4435669526529	3.56367335347535	-0.473056837340924	0.402851064424704	0.778361555465358
Merged-chr7-127196088-4	chr7	127195594	127196594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027353)	promoter-TSS (NM_027353)	-17.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	6.31380660451805	6.65278949588428	6.38202802097331	6.46161432771758	6.65685682925154	6.65290942420438	0.208822660146502	0.45191357105161	0.809286173636239
Merged-chr1-191894583-4	chr1	191894067	191895067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030669, exon 5 of 5)	non-coding (NR_030669, exon 5 of 5)	-12214.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	5.33175725722001	5.52969243287379	5.14306556311009	5.50131291865378	5.21128911469386	4.90084502344624	-0.231639899296341	0.551199122406185	0.861024209682803
Merged-chr17-5275644-2	chr17	5275144	5276144	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	143123.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.50009410104462	4.24473099698894	4.24396224856256	4.19075544963492	3.8976354995891	4.48163914853334	-0.37287913476131	0.456752405962957	0.811822155193116
Merged-chr10-71284701-2	chr10	71284201	71285201	+	904.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	561.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	4.16641556976827	3.99709312340326	4.50563823588738	3.98954514440098	3.59373048595812	4.07752063834992	-0.987167903316579	0.0714341447329205	0.350618370922116
Merged-chr7-101539968-3	chr7	101539444	101540444	+	917.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	15858.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.85585495938878	4.70793303740381	4.15816960377523	4.01131019247141	3.70437328404043	3.78437174313601	-2.20570671406127	4.57619924004436e-05	0.00146452456294466
Merged-chr4-44014938-4	chr4	44014447	44015447	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	2297.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	5.67458455899243	5.80849868531807	5.59696920190544	5.96542866736298	5.89226076526887	6.05793813961908	0.47197866402845	0.123101782394236	0.469375521223989
Merged-chr11-80182636-1	chr11	80182136	80183136	+	1000.0	f1_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1236.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	3.93215472011876	4.16507761643467	4.02613240525912	3.92847365864707	4.0268638183531	3.99768425042248	-0.179636497852726	0.716238177957294	0.926569584146506
Merged-chr4-120926269-4	chr4	120925761	120926761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1256.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	6.27639863028422	5.81265748343642	6.51908886071579	6.04234315576635	6.31598307178993	6.35320505227619	0.029476333271694	0.928934318989649	0.983969840039854
Merged-chr15-53134398-4	chr15	53133905	53134905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	211778.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.65827205797152	4.83149438735985	5.00096403420493	4.425182263416	4.54976794469881	4.67935056558112	-0.667557024755718	0.111155276633909	0.445419833321467
Merged-chr5-16507257-1	chr5	16506757	16507757	+	789.0	f0_balb.idr	Intergenic	Intergenic	-46238.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.57616025849649	4.61956072766358	4.50103215146494	4.09921558063399	4.28664367829476	4.2595359697821	-0.91003991037723	0.0415155607740268	0.254793582977186
Merged-chr6-57513858-4	chr6	57513350	57514350	+	683.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 6 of 6)	intron (NM_175523, intron 6 of 6)	21576.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	4.1946655498015	4.1808831409021	4.41598752140451	4.29363992153957	4.2465059021017	4.59925186663473	0.314205628551556	0.498170450317035	0.833856267944725
Merged-chr17-34093463-3	chr17	34092971	34093971	+	865.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	1092.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	3.70384941511651	3.39816713479508	3.43440410349048	4.06665762634825	4.1913020092126	4.1894170289268	2.03658568763088	0.000354851126843516	0.00800174866189575
Merged-chr4-105286499-1	chr4	105285999	105286999	+	607.0	f1_c57bl6.idr	Intergenic	Intergenic	129152.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.55181257914473	2.55741130458626	2.56687412897884	2.83279792230724	2.88789300355535	3.06842210572612	2.07126330181367	0.00793338753275207	0.0855812776207117
Merged-chr2-48814872-3	chr2	48814365	48815365	+	798.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	CpG	756.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	5.96900804316698	6.14189443262978	6.09658785293576	6.27384894606247	6.25853922688242	6.41447033606633	0.406766200162994	0.148482774575077	0.514056886706346
Merged-chr13-49355647-1	chr13	49355147	49356147	+	670.0	f0_balb.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	14098.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	2.38959394544859	2.47507595261481	2.5928439671327	2.41323683614443	2.25212638619085	2.28021796904243	-1.10324114638882	0.192379775881513	1
Merged-chr13-92668436-4	chr13	92667916	92668916	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	57278.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	4.61606951929692	4.9556509209975	4.99245139993891	4.62144960274527	4.35886944620187	4.77743971251915	-0.646007747446298	0.135273881814199	0.491436830160489
Merged-chr12-86265810-3	chr12	86265313	86266313	+	901.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 6 of 9)	RMER10B|LTR|ERVL	23955.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	4.86502212846759	4.88877862377585	5.09464332597202	5.20297551922728	5.39309781368344	5.28773907932769	0.744560829585139	0.0401290004470722	0.249382595088108
Merged-chr10-127538051-4	chr10	127537563	127538563	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008512)	TTS (NM_008512)	-3504.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.14060208025399	2.74596387854735	2.98529590611249	2.85173915065209	3.07032779668337	2.80911616514049	-0.222805178332664	0.762898533778764	0.941663714620562
Merged-chr2-124649211-4	chr2	124648715	124649715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	RMER15|LTR|ERVL	-4366.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.2742589189664	6.21156959874544	6.20340469184081	6.10499753501648	6.19153772211475	6.18011948680383	-0.120417643666778	0.663201357810352	0.907110065208622
Merged-chr8-121947886-4	chr8	121947366	121948366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2626.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	5.52958327067541	6.06571098164182	5.92957785495939	6.0449934035356	5.65399282321635	5.742808247564	-0.0664577864364334	0.847108085719164	0.96415075979756
Merged-chr11-120729738-4	chr11	120729206	120730206	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007621, exon 8 of 8)	3' UTR (NM_007621, exon 8 of 8)	2315.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	5.19380869103118	4.89797834702525	5.54266863779435	5.13601047187288	5.5438968817303	5.15960711164603	0.153534248298732	0.703049638796713	0.922108924938678
Merged-chr8-104219282-4	chr8	104218755	104219755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141922)	TTS (NM_001141922)	29303.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	5.11185066137985	4.91941223657049	4.98669756262853	5.00440587023061	4.92714446064187	5.0161131886028	-0.0645750175428594	0.862174285065878	0.967996224966109
Merged-chr4-139176026-4	chr4	139175539	139176539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033543, exon 3 of 3)	non-coding (NR_033543, exon 3 of 3)	4616.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	7.69378298002973	7.53427545474735	7.35274346887697	7.82704941224187	7.99838446483643	7.4639725780075	0.366377215887917	0.156082790682291	0.526335839801097
Merged-chr13-100744214-4	chr13	100743711	100744711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025369, intron 1 of 3)	CpG	448.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	7.85299316291598	8.24024826974871	7.79270195166584	7.89870669970155	8.30415969525555	7.57393904985057	-0.016334459320611	0.954148576676689	0.989495550016789
Merged-chr6-88832875-2	chr6	88832375	88833375	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	9060.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	4.3199792386344	3.71827492326909	4.02628429735294	3.81919636448458	4.28948115105677	4.32112161253169	0.321551876697169	0.563635422698511	0.865992481769395
Merged-chr13-103775164-2	chr13	103774664	103775664	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361085)	promoter-TSS (NM_001361085)	-556.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	3.41958484283563	3.5487337367743	3.58250879869925	3.21943470890351	3.26347025738127	3.44240484582436	-0.814794359298883	0.175152594080518	0.554867054796835
Merged-chr9-45197245-4	chr9	45196736	45197736	+	907.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1470.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	3.58812928751802	3.34907869682087	3.5194884687282	3.28531449333616	2.84181966356727	3.37578861667343	-1.22966140297946	0.0816944304296	0.378150320827
Merged-chr8-22185158-2	chr8	22184658	22185658	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004140, intron 1 of 8)	MTC|LTR|ERVL-MaLR	661.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	3.30800313455668	3.31127525355818	3.68632653585049	3.31443174973104	3.40699775340075	3.50542069024429	-0.110697256482081	0.856124018656431	0.966375464211684
Merged-chr5-113631570-2	chr5	113631070	113632070	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	12033.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.96980702943341	3.82393404106324	4.35221849328217	3.91617312018045	3.98157665411882	3.93399649800744	-0.329478200897284	0.529211884967214	0.850847288056475
Merged-chr11-87122588-1	chr11	87122088	87123088	+	544.0	f1_balb.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4487.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	5.50313009059789	5.57395331935645	5.65381132253325	5.5238474878016	5.83496699526212	5.57876205550014	0.165924334129209	0.612308700561061	0.886694626735313
Merged-chr3-96593551-3	chr3	96593093	96594093	+	815.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 1 of 7)	RSINE1|SINE|B4	588.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	6.56334443930609	6.35065937741246	6.01156689669108	6.5879114217143	6.91902863560149	6.14741260995941	0.427512661880977	0.206852301277881	0.59758927452017
Merged-chr19-46506229-1	chr19	46505729	46506729	+	574.0	f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4581.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.10133823357111	6.73476286032535	7.06555286455843	7.17077843596213	7.16726002436045	7.01819026335171	0.228502918904945	0.372326479130033	0.756139355546515
Merged-chr5-143061240-3	chr5	143060741	143061741	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	51779.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.01035805498511	4.86041986646055	5.08906737371874	4.80006418742373	4.72194203774774	5.15243759852892	-0.204909029549028	0.606478349999717	0.884136163326996
Merged-chr16-10986555-2	chr16	10986055	10987055	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3|SINE|B2	6566.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.2183102576637	4.20637204338532	4.72950640050035	4.28004659293528	4.57310634476614	4.40804155448659	0.089798475778323	0.851441511978977	0.965220310573141
Merged-chr11-23953745-4	chr11	23953256	23954256	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-58486.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	2.97860439988302	2.72909265931058	2.74486704249269	2.73666141215854	2.67854478596391	2.88002009585421	-0.319728588498283	0.663884076117985	0.907434579128176
Merged-chr7-145029274-4	chr7	145028752	145029752	+	929.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89327.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.81128337356157	2.67497772090393	2.95342788675759	2.61556119740555	2.91682683189659	2.59309310623246	-0.467018265215109	0.552138854085828	0.861546661145201
Merged-chr4-135820417-4	chr4	135819911	135820911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35660.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	6.57840657277267	6.71097376719371	6.41292269390727	6.4019457210801	6.68905955665277	6.49114724607009	-0.0657587907954461	0.811283282782125	0.955191014740422
Merged-chr2-38207971-1	chr2	38207471	38208471	+	655.0	f0_balb.idr	intron (NM_146122, intron 2 of 21)	B1F|SINE|Alu	79413.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	2.7507811816061	3.24640008150685	2.96131372188157	2.99007057659989	3.0046392311416	3.37211896757124	0.540826798233752	0.464911641976452	0.816631332252401
Merged-chr4-129696775-4	chr4	129696267	129697267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199305)	promoter-TSS (NM_199305)	78.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	5.27203421918214	5.34464975254617	5.39409000740779	5.41162219844123	5.30400846385117	5.54212580566242	0.156019079179027	0.64519500573354	0.900459345953675
Merged-chr2-120290679-2	chr2	120290168	120291168	+	694.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1599.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	2.94095951421038	2.83489205478398	3.12331905744575	2.96650494349216	3.03219784961088	2.90238243618499	0.0269844367300738	0.968830995991892	0.992868854495543
Merged-chr5-32013223-4	chr5	32012704	32013704	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-123268.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.69032579025008	5.00695514921318	4.93353485791744	5.72188624631531	5.38932467109835	5.08121787728957	0.31071604259235	0.478101467453195	0.823624084467102
Merged-chr15-73513019-2	chr15	73512519	73513519	+	975.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_152151, intron 1 of 23)	intron (NR_152151, intron 1 of 23)	459.0	NM_001081066	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	2.56307733053651	2.56098509280468	2.81775325700289	2.96039217166425	2.48565273943631	2.57527615255731	0.22412762960971	0.781254989412825	0.946170805022375
Merged-chr8-88290559-3	chr8	88290067	88291067	+	741.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037723, intron 1 of 27)	intron (NM_001037723, intron 1 of 27)	1501.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.21041752955373	4.22646443711976	4.20182561755405	4.11830225421529	3.9908440506771	4.4389459383782	-0.0825749174016789	0.864190465287502	0.968269312109804
Merged-chr17-24528075-4	chr17	24527585	24528585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172114)	promoter-TSS (NM_001172114)	-147.0	NM_001172114	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	6.67052536585969	6.74525814108312	6.72408174954676	6.90440005210991	6.9647921215876	6.59883291611082	0.202211639958639	0.438646502903374	0.800679143913084
Merged-chr2-181188761-4	chr2	181188255	181189255	+	938.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151465)	TTS (NR_151465)	1508.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	5.53922313525075	5.44986892289618	5.7252253775549	6.02659611369293	6.08584363920501	5.70741840757139	0.712617456968981	0.0269357899173405	0.195437147492332
Merged-chr5-139734975-4	chr5	139734481	139735481	+	952.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1352.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.6280746470438	5.55881942910575	5.44320899040548	6.34446273746277	6.37199522591095	5.72270174848715	1.13089472670496	0.000897159903118698	0.0165628381392909
Merged-chr12-117736180-4	chr12	117735673	117736673	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 22 of 27)	RLTR42-int|LTR|ERVK	-107688.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	3.62171563992031	3.5331199034999	3.88030355129081	3.97259334473765	3.82038819821631	3.63956012518055	0.47296241932911	0.394227580147781	0.772159702672581
Merged-chr16-11420452-4	chr16	11419949	11420949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 10 of 20)	Tigger17|DNA|TcMar-Tigger	14801.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.57833990050931	6.80395184838064	6.43952143729213	6.556575859802	6.67753867911037	6.34214631490689	-0.131198375255694	0.640891878168278	0.898669184371116
Merged-chr2-158142073-2	chr2	158141573	158142573	+	722.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	4319.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.13504615338895	4.10444692053222	4.40422321300163	4.37203084578113	4.21876692188649	4.58796799543556	0.480280805755597	0.307254244192765	0.703348404379531
Merged-chr7-106236464-3	chr7	106235914	106236914	+	583.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21074.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	5.3755320087559	5.95660194923982	5.63608701808404	6.49793827507067	6.83147160345658	6.38373373515011	1.53249120105953	5.34970185044303e-06	0.000234901314813543
Merged-chr11-84442781-3	chr11	84442282	84443282	+	806.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 11 of 12)	intron (NM_019816, intron 11 of 12)	70719.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	5.7430701089155	5.45384969133705	5.19110645427713	4.65432570602411	4.68117399780381	4.63071151085903	-1.77714771344823	7.67225654725294e-06	0.000318559442506898
Merged-chr10-80738417-2	chr10	80737917	80738917	+	907.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	3858.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	3.44799903174765	3.44647607856336	3.7074755581902	3.62482707615127	3.5551568289329	3.67627877465008	0.302127621171214	0.593394207241069	0.878461334527753
Merged-chr3-27236353-2	chr3	27235853	27236853	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	PB1D9|SINE|Alu	53349.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.34051896549915	6.29904768070043	6.10595292442262	6.35571534108665	6.72541473798283	6.37784360776174	0.406531813790048	0.160972707386055	0.533655406039239
Merged-chr10-41523978-4	chr10	41523468	41524468	+	959.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	4468.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	6.04637482647008	6.02482701475009	5.8178260706311	6.00553795069088	6.0876692282806	6.37435764510355	0.312170045438585	0.303281487897595	0.699902971652469
Merged-chr14-101594490-4	chr14	101593950	101594950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	14741.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.96895874017095	5.83321454017816	6.17537656717976	5.84792257677915	5.93640504351649	5.45662603363553	-0.37915630177243	0.253870363948297	0.651117231535132
Merged-chr19-5818112-4	chr19	5817608	5818608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15436.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	6.60817399028076	6.35184155927315	6.65479729735838	6.66826732253977	6.68672118376657	6.58122087513685	0.176231638990097	0.508548608541087	0.839818423824339
Merged-chr12-59131388-4	chr12	59130911	59131911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-42.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	9.28618554215685	9.60389005682073	9.10625343498747	9.2466732504437	9.33112895038849	9.05432466483546	-0.182599016191814	0.423542302511268	0.792055804178955
Merged-chr15-76332040-2	chr15	76331540	76332540	+	868.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_010331, exon 2 of 12)	exon (NM_010331, exon 2 of 12)	746.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	4.33953424994341	4.28791011517926	4.38023495245484	4.05795234337677	4.21393013325671	3.97875546783574	-0.653801459637105	0.167552721863223	0.543494732605452
Merged-chr3-105803820-4	chr3	105803336	105804336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2455.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	6.73628507992909	6.49217743944275	6.12637659103576	6.53979705161899	6.73829967715816	6.49900375930402	0.181939637022358	0.543567985537456	0.857551302506722
Merged-chr16-95797364-4	chr16	95796848	95797848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94941.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.08243275829741	3.95860682793234	3.82838837970577	4.45414830896687	3.6863258303545	4.15247237012453	0.494295120186706	0.379651780381409	0.76201161008233
Merged-chr5-112995738-4	chr5	112995236	112996236	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	19802.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.07289727771054	5.49260892466779	5.44300123750175	5.32429428206016	5.41506515489743	5.41827464465852	0.0773158974264413	0.828106290193887	0.959633697141491
Merged-chr7-134670759-4	chr7	134670256	134671256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	69.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	4.8811485536304	4.61163173906997	4.66889504445075	4.6804018376456	4.31070269435252	4.39208058848999	-0.626791290462429	0.152331336837292	0.520263755512759
Merged-chr1-120450877-2	chr1	120450377	120451377	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54147.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.93371414792799	2.79190918407984	2.9182858452037	3.07707618537273	3.05893145717802	3.22357877249225	1.11294029462126	0.102813642618179	0.427532112692326
Merged-chr4-137048218-1	chr4	137047718	137048718	+	828.333313	f1_c57bl6.idr	intron (NM_198248, intron 1 of 18)	CpG	477.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	5.8111433341361	6.0432964024936	6.18502045855349	6.398490120036	5.9562414005894	6.24511473042487	0.327534715753938	0.296928429940755	0.693511179566253
Merged-chr17-47759826-3	chr17	47759326	47760326	+	916.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	21895.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.53112375981202	6.6698952760511	6.48875851911424	6.30959758191093	6.2147610458615	5.84468006280355	-0.686419666115464	0.0195008379929253	0.158754107006685
Merged-chr4-109116683-4	chr4	109116195	109117195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	1341.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.82533700087499	5.86929268283008	5.81593476127208	5.97613216193124	5.9515263980351	5.90235734491849	0.189090796426158	0.520678453964347	0.846662720861138
Merged-chr4-131861229-5	chr4	131860685	131861685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 5 of 9)	MIRc|SINE|MIR	-12454.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	5.35380547923727	5.04409174532282	5.08038768181405	5.28109877907019	5.00675680650497	5.17932226239889	-0.0326764223551226	0.930006831083838	0.98436656024861
Merged-chr9-57147640-2	chr9	57147140	57148140	+	773.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_151685, intron 1 of 8)	intron (NR_151685, intron 1 of 8)	665.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	4.95381613801708	5.36992042173822	5.07232965221917	5.33653963227446	4.80785793694763	4.95578839525495	-0.201966741476597	0.620371340176244	0.890068302891401
Merged-chr11-34008687-7	chr11	34008230	34009230	+	947.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15537.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	7.09136516616461	6.98859753282943	7.3382179039452	7.08971704440319	7.18359688721501	7.13210475532343	-0.00347482071284459	0.98875211311617	0.997426973334006
Merged-chr4-150341012-3	chr4	150340514	150341514	+	856.727783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	59098.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	6.07819107284732	6.49395925535134	6.2242754600961	5.54848590552917	5.87197884984415	5.37699731925376	-1.12812095898445	0.000999464249160386	0.0180085364322515
Merged-chr13-119602075-3	chr13	119601543	119602543	+	897.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21776.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.52843568779275	4.09339783015787	4.46719137807387	4.05642166822109	3.68727940974096	4.45459358740369	-0.757671290356526	0.170026375891048	0.547289560416266
Merged-chr19-17217260-4	chr19	17216708	17217708	+	755.458313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	122297.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.9638203897594	5.65567810699582	5.78707335684329	5.66829531407546	5.74090674739645	5.54824976255087	-0.267541635485815	0.403353271523519	0.77875989555314
Merged-chr19-3911278-2	chr19	3910778	3911778	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 3 of 6)	intron (NM_001271443, intron 3 of 6)	1496.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	6.19473247073772	6.12124181657761	5.82823742903492	6.36796047390902	6.40449274258263	5.91754182387304	0.324928722768383	0.304599456705324	0.700973852740454
Merged-chr2-113449459-4	chr2	113448956	113449956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	8392.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.28215381431915	7.60519498268604	7.3260055072873	6.8030033519191	7.08780805954312	7.04481327904271	-0.644676034617406	0.011368254625886	0.110107057491645
Merged-chr2-113848355-4	chr2	113847852	113848852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181416, exon 1 of 12)	5' UTR (NM_181416, exon 1 of 12)	309.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	7.45144779249076	7.59897036030995	7.71284970209367	7.87771583926434	8.13242926835446	7.71617054814777	0.488637840006141	0.0416929414916325	0.255335828748591
Merged-chr10-37323117-3	chr10	37322609	37323609	+	670.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.94023899814704	2.76865899605519	3.03653123943781	3.13285073322175	2.80661796255386	2.86720241908923	0.129158116612959	0.856690594150264	0.966569186810061
Merged-chr7-114530779-3	chr7	114530279	114531279	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011055, exon 13 of 16)	exon (NM_011055, exon 13 of 16)	32193.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	4.23537261268915	4.36531111970551	4.08791051434082	4.16573265265968	3.91383512568631	4.25047924130051	-0.371934270940807	0.445669438447336	0.805296706011004
Merged-chr2-157430075-3	chr2	157429555	157430555	+	836.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	B1F1|SINE|Alu	5762.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.68102128192594	2.8235452002811	2.73640601303267	2.60976335784801	2.41003711612367	2.55595527341683	-1.32157840576554	0.0954111326525962	1
Merged-chr1-85896906-4	chr1	85896415	85897415	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	2405.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	5.53857782822544	5.27176196241991	5.36431004613964	5.61152887418421	5.58273436203078	5.60337059539483	0.381935231863882	0.248369953179394	0.645481058942157
Merged-chr1-105663254-4	chr1	105662737	105663737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	439.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	6.03338240182659	6.5072077442311	6.46076243027477	6.30322556450574	6.55137569439877	6.29395516444616	0.0768256604990028	0.799406769524851	0.952248176414355
Merged-chr7-27859629-2	chr7	27859129	27860129	+	912.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	-956.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	3.88170586275906	4.23766922000632	4.40837783943988	4.27800903731852	4.16869790067109	4.51369388494248	0.360245329966581	0.469820546428843	0.819126978705139
Merged-chr14-54386559-2	chr14	54386059	54387059	+	786.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22913.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.03478741735747	6.30770951637754	6.23971772067262	5.46712248939687	5.09128686161429	5.67286288039089	-1.42138352922096	3.18666202847715e-05	0.00108448169351954
Merged-chr5-77252251-4	chr5	77251686	77252686	+	633.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13308.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	2.45619955032049	2.49901123542967	2.60841494948767	2.65321970375668	2.48700592815849	3.0866237410558	1.31252197242023	0.108698302450937	0.440510829453417
Merged-chr2-155592762-4	chr2	155592264	155593264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008180)	promoter-TSS (NM_008180)	46.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	6.53450962490497	6.79578351327652	6.69267987668267	6.62724275732254	6.8886417188824	6.82781929014099	0.170599699441424	0.517892037851826	0.844840133424329
Merged-chr2-52938477-4	chr2	52937962	52938962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80594.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.80829961328453	7.95431249891211	7.1893933134514	7.62024804894843	7.90736101354667	7.16645465295052	-0.130145635175864	0.680814369997539	0.914491400384276
Merged-chr10-117791680-1	chr10	117791180	117792180	+	540.0	f1_c57bl6.idr	intron (NM_134010, intron 1 of 27)	intron (NM_134010, intron 1 of 27)	1025.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	3.40051633511998	3.28742169697559	3.19694846652644	3.58448182734523	3.47137267563488	3.61069250748035	0.952164081772196	0.113198663024427	0.44938889230771
Merged-chr6-98234316-2	chr6	98233816	98234816	+	888.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108438.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	2.5229922847993	2.54498575092075	2.64101812105589	2.36094277421349	2.34442065368578	2.71386282721861	-0.539927169898931	0.511588480695738	1
Merged-chr1-52801854-4	chr1	52801300	52802300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	15888.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	5.86453495408321	5.99513803501027	6.00277332389277	6.04513464422167	5.93902185850454	6.06349019582043	0.102932085455716	0.724421867596287	0.92936515763351
Merged-chr4-59823252-2	chr4	59822781	59823781	+	811.0	f0_balb.idr|f0_c57.idr	intron (NM_172468, intron 1 of 8)	L1MB2|LINE|L1	17631.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	5.21770051674082	5.17881821434631	5.05043805806196	4.62050537740032	4.72977678540642	5.11467766311282	-0.713543028139143	0.0715220310812887	0.350858143464767
Merged-chr15-66093673-4	chr15	66093178	66094178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	C-rich|Low_complexity|Low_complexity	-116874.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	3.19613131902941	3.36199902254088	3.30090421035295	3.21900096693537	2.8833424489376	3.14292594876055	-0.878826245142254	0.188151986949327	0.573574205225435
Merged-chr7-80029938-6	chr7	80029428	80030428	+	851.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	3700.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.30156307517543	6.31728352411049	6.43855240412329	6.09075512008816	6.16615894846965	6.27403043588826	-0.290613846822139	0.292979129461348	0.690053425164737
Merged-chr2-163516650-4	chr2	163516136	163517136	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9779.0	NM_001312907	15378.0	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	3.20838719345284	2.99278812990143	3.02820312661071	2.84395631092636	2.79704424018095	3.04171636729131	-0.905042420110704	0.195090693482414	0.582787221560878
Merged-chr1-106230794-2	chr1	106230294	106231294	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	RMER19A|LTR|ERVK	58925.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	6.09357843153194	6.13154800057045	5.79529597745943	5.66884678835286	5.69799980270958	5.6966606061812	-0.601258670004928	0.0515692755054272	0.28955909820201
Merged-chr2-164858327-4	chr2	164857817	164858817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011125)	promoter-TSS (NM_011125)	-609.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.91788974245102	6.82561711168347	7.04806126870937	6.6552976337908	7.19182865204893	6.71773934760171	-0.0588014070181622	0.835965398857805	0.961873866737315
Merged-chr2-120159585-2	chr2	120159069	120160069	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-4994.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.0639121786619	6.12764798060829	5.65117725643185	6.10775755711694	6.14979434759632	5.5611706993358	0.00765712768117337	0.982506718516856	0.996025201140234
Merged-chr3-51326967-4	chr3	51326434	51327434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	MTC|LTR|ERVL-MaLR	13710.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.15783371231799	7.23759189160012	7.15834776262381	7.2552725448851	7.44172299621422	7.14039749679215	0.15972360225073	0.505036945084061	0.837928144581384
Merged-chr16-18876595-4	chr16	18876101	18877101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	36.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	5.77326271051013	5.88181737251816	6.25834417148999	6.1498271985542	6.15270843027232	5.85824562270345	0.160807567360631	0.614897342058671	0.887639829057119
Merged-chr3-152932255-4	chr3	152931745	152932745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	49962.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	4.45490595393625	3.9839097088749	4.82682292513453	4.77460688048892	4.81956644007533	5.11774641621658	1.05404250213931	0.0326599768425452	0.219992823857727
Merged-chr16-57554721-2	chr16	57554222	57555222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5480.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.41205626037719	6.0110852315647	6.1315435922931	6.41004152327977	6.25184927385418	6.41227892631421	0.259344956933358	0.376862006822171	0.759455894009667
Merged-chr4-16087834-2	chr4	16087334	16088334	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73946.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	4.90185572924938	4.68214225506941	4.97544967905365	4.83940989683032	4.8614499795914	5.23023990138888	0.277110142140836	0.490066303197881	0.829980359087456
Merged-chr19-43522808-1	chr19	43522308	43523308	+	574.0	f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	1797.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	5.13142979546953	5.06745945382605	4.71424817588401	5.33411717137506	5.19663047305615	5.44644233052383	0.66961537779855	0.0798719476244942	0.373726874989536
Merged-chr5-25760032-4	chr5	25759557	25760557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310504)	promoter-TSS (NM_001310504)	84.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	3.56141808097784	3.66798062468688	3.62163024683657	3.25715111147671	3.2484809628543	3.42472235889665	-1.19806328058102	0.0437709220373865	0.263042819650935
Merged-chr19-32249932-4	chr19	32249364	32250364	+	970.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-38851.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.32079333221448	3.34684402133717	3.41244000597772	3.25291602331948	3.44988750764573	3.58606343124579	0.289020171941643	0.630523632865966	0.894734411238057
Merged-chr6-140624209-4	chr6	140623735	140624735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-674.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	7.99873012247558	8.11826580901404	8.08523582797086	8.1600038458259	8.26310731468186	8.11333036491533	0.163059397948248	0.433495557369693	0.797815674529737
Merged-chr15-77306875-5	chr15	77306350	77307350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110827, exon 1 of 14)	5' UTR (NM_001110827, exon 1 of 14)	203.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	5.0925724677368	5.13397403775206	5.45865961536657	4.98097834089885	4.45804005508595	5.11289609990517	-0.77348081887063	0.0700717174144082	0.346642536422002
Merged-chr14-75790551-4	chr14	75790049	75791049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3512.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	6.16663761370459	6.16297315284988	5.8779798981537	6.35541836606609	6.38213535771193	6.54082068734346	0.560099435562674	0.0512339709387331	0.288498023486464
Merged-chr11-69683909-2	chr11	69683409	69684409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001034097, exon 12 of 13)	exon (NM_001034097, exon 12 of 13)	1645.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	6.50458011177855	6.77878809112082	6.58646536752151	6.37678783223832	6.37278083934503	5.90967668053323	-0.615172734389747	0.0395786749090778	0.247223360245818
Merged-chr19-9982001-1	chr19	9981501	9982501	+	698.0	f1_c57bl6.idr	promoter-TSS (NM_010239)	promoter-TSS (NM_010239)	-645.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.58370997075858	7.83337112503089	7.19728188338948	7.42947748004321	7.64978484232304	7.4201837235757	-0.0964220665789079	0.71842891637655	0.927364481477278
Merged-chr5-36582001-4	chr5	36581508	36582508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	CpG	389.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.93108025526016	6.94837196541335	6.93021223016823	7.0505725156321	7.12166312235973	7.0158339974431	0.198201574041448	0.403804256178846	0.779031412271333
Merged-chr17-5605582-4	chr17	5605094	5606094	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.82730116462351	6.65831721013703	6.55064553630977	6.34714349035992	6.41955432042972	6.40938881160216	-0.476531684847897	0.0729535159626624	0.35492698101042
Merged-chr7-28350022-3	chr7	28349481	28350481	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	-708.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	5.81944052320254	5.68664096161509	5.66020759876014	5.99606721397831	6.16340087850636	6.09082550795301	0.63338146829082	0.0342467004084674	0.226482232362721
Merged-chr3-103587522-4	chr3	103587019	103588019	+	877.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001276681, exon 3 of 8)	exon (NM_001276681, exon 3 of 8)	11393.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	3.7663512068027	3.67225929140646	3.60819204292191	3.86544600520112	3.54539489276925	3.8856628880989	0.266321853893484	0.630901385472521	0.894935857795011
Merged-chr13-94057793-3	chr13	94057193	94058193	+	876.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172589)	promoter-TSS (NM_172589)	-103.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.5378001324676	2.56303558459892	2.43273859788341	2.65401686924771	2.54115401082623	2.75966384098498	0.779975331575132	0.320389443259118	1
Merged-chr17-34260776-2	chr17	34260274	34261274	+	931.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2453.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	4.84977593948585	4.69566531537262	4.60937409201823	5.29056628744984	5.68921043537746	5.22332990587656	1.47167161836534	0.00019142721588376	0.00483114218357777
Merged-chr10-117833727-2	chr10	117833227	117834227	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	12247.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.62442644976132	5.65739570627786	5.50467169118987	6.16006750747179	6.08123252199554	5.97032713923122	0.841234611420402	0.00566941723734057	0.066915648929899
Merged-chr11-94372821-2	chr11	94372229	94373229	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 7 of 30)	intron (NM_029600, intron 7 of 30)	20247.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.97017363889165	4.53128433299665	5.02044011473447	4.25004546099599	4.12646023827332	4.58704106056764	-0.598206423997613	0.27802749431913	0.675349926939312
Merged-chr1-173939488-2	chr1	173938990	173939990	+	570.75	f0_c57.idr|f1_balb.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	3002.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	3.0455842805105	3.23962621407347	3.10767461469902	3.50172853384622	3.79032801295139	3.74392149755809	2.18092436958325	0.000808977351669015	0.0153019748755798
Merged-chr1-95669295-2	chr1	95668795	95669795	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1701.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.15730939085568	4.07489336129892	4.14137990446192	4.08460479811601	3.90070793804305	3.91739186444415	-0.454194550367402	0.352169445499038	0.739888459678721
Merged-chr5-33018748-4	chr5	33018253	33019253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011738)	promoter-TSS (NM_011738)	-63.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	7.74230267602374	7.97890083692449	7.80580968277404	7.90461227246921	7.83567698408717	7.85390611912989	0.0230733499988793	0.915832892088602	0.981201223155309
Merged-chr15-64279396-3	chr15	64278919	64279919	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33254.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.38091748802401	5.54498766076381	5.12392947922342	5.41806025296536	5.54506858197521	5.56952682493347	0.263886574051365	0.448802706473579	0.807454029128485
Merged-chr10-37386398-4	chr10	37385894	37386894	+	875.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247468.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.98406656696608	3.93489783766137	4.34400513200828	4.18018448309419	4.07857581008134	4.05683989436214	0.0518474146709771	0.916901458566998	0.981431795618389
Merged-chr15-65108781-3	chr15	65108274	65109274	+	884.8833619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186478.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	3.01958904875545	3.04100510250317	2.96930025062317	2.78826168894342	2.74495721591307	2.92181599521492	-0.983132953392001	0.161586543581721	0.534604100133116
Merged-chr7-73616280-2	chr7	73615780	73616780	+	692.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-57885.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.4154588260929	4.47959814801478	4.38232177702143	4.20735209959818	4.25564174132926	4.27131652182435	-0.490068865619225	0.269737024068039	0.66686579973798
Merged-chr11-78468433-2	chr11	78467933	78468933	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026740, intron 2 of 4)	intron (NM_026740, intron 2 of 4)	2732.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	3.72952767447459	3.95847622358414	4.09902561142723	3.86220165449342	3.80488133592934	3.7285780706961	-0.407067307529888	0.44167523362158	0.802824843025634
Merged-chr16-91819775-2	chr16	91819275	91820275	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 12 of 15)	MTB_Mm|LTR|ERVL-MaLR	90404.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.44313242303007	4.81600222265441	4.81911396537177	4.56009419555509	4.79459053114139	4.84781138436115	0.0877932480546299	0.836228543176087	0.961960888484752
Merged-chr8-68203572-4	chr8	68203064	68204064	+	665.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72964.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.92160805313646	3.91637049754075	3.93899301574414	4.02618359746987	3.84605789409823	4.10183178217242	0.191279970623651	0.702639496282096	0.921946340875828
Merged-chr11-70653325-4	chr11	70652815	70653815	+	958.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	1335.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	5.45747058771467	5.47458937187746	6.03163738249198	5.73584486889717	5.76481411802591	5.89645482067486	0.23672780763685	0.494956000808791	0.832153667472614
Merged-chr8-83662522-4	chr8	83662033	83663033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 4 of 6)	intron (NM_018771, intron 4 of 6)	-4111.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	3.32685373065242	3.16203952937874	3.09447957496509	3.01172833585857	2.90949681712262	3.33624413328805	-0.475487697175796	0.48611617354439	0.827646803246881
Merged-chr11-100938331-4	chr11	100937836	100938836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	1204.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	6.50284735063581	6.73551261500687	6.2763345477047	6.73227761564358	6.97717224725125	6.74093513172563	0.467960846808109	0.0962043232214832	0.413479820589523
Merged-chr5-36748675-4	chr5	36748171	36749171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133724)	promoter-TSS (NM_133724)	8.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	7.0473410165427	7.09848505786119	7.2779427516608	7.17353964817075	7.02473839220376	7.0719639070479	-0.0733411721110866	0.760970194119981	0.94105384427934
Merged-chr17-28260095-4	chr17	28259589	28260589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-11619.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	7.52317817325611	7.65519891040458	7.1411310724842	7.48939658241372	7.53676674446457	7.24976665178021	-0.0447437043700155	0.863189289232155	0.968203690581793
Merged-chr1-167394287-5	chr1	167393774	167394774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-477.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	5.7153229141466	5.70736319364961	5.63691252933978	5.55788119744827	5.90085546231182	5.58666018217042	0.0263291209613871	0.935452666538004	0.985852245513165
Merged-chr15-51952590-4	chr15	51952080	51953080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	39180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	6.17113594470613	6.40008521419551	6.20077054805669	6.80744706265993	6.84183803171628	6.17185466677141	0.62940621521518	0.0444371886894881	0.265608045145817
Merged-chr13-74809232-3	chr13	74808725	74809725	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301153)	promoter-TSS (NM_001301153)	-465.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	4.3831061707102	4.52019008684152	4.52366199965393	4.53976007793198	4.40664121176254	4.54912830146481	0.0495977953054222	0.907603406102193	0.978965119317186
Merged-chr9-99179387-2	chr9	99178887	99179887	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-39176.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	6.06798577172305	6.002877257459	5.93411543948599	6.30265320893426	6.26019130125608	5.97130632811995	0.321860044440923	0.273140605422679	0.670407465738777
Merged-chr17-34632545-4	chr17	34632054	34633054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030890)	TTS (NM_030890)	2868.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	6.46714152502547	6.2950390649268	6.85095114181517	6.54684007708221	6.43845163857504	6.64510513155243	-0.00972254558168968	0.973497630142472	0.994039095662068
Merged-chr5-31494706-4	chr5	31494253	31495253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133756)	promoter-TSS (NM_133756)	12.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	4.08907836430977	4.1147527464513	4.18576414538808	4.27421865320941	3.97914833203627	4.01591101592971	-0.090951539560926	0.851129957509627	0.965150610598013
Merged-chr17-57330093-2	chr17	57329593	57330593	+	727.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011691)	TTS (NM_011691)	-28593.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	2.85049550610191	2.80722918157569	3.20957145085551	2.75247582439433	2.94246476377316	3.06293404793627	-0.181128667046462	0.803205032369617	0.953422605427866
Merged-chr10-4389747-2	chr10	4389247	4390247	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1639.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.21139132286344	4.66667070739432	4.63084059694692	4.62213495243125	5.05606441436603	5.15005305914693	1.01963583630815	0.0241859787308565	0.183018090054302
Merged-chr2-90501030-2	chr2	90500530	90501530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	ORR1C2|LTR|ERVL-MaLR	-21856.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.80621876011924	4.55905703213563	4.89508232652303	5.12646767543155	4.75874876999028	5.25185650710462	0.656139050102878	0.113672547334073	0.450403110408264
Merged-chr4-134653072-4	chr4	134652557	134653557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	L2b|LINE|L2	51233.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	4.89327530620215	4.64947322973001	4.40825498507998	4.33499853302851	4.10914407026123	4.24127454579703	-1.14369217747907	0.0129731601285233	0.120746164202927
Merged-chr13-45904922-4	chr13	45904495	45905495	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	59996.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.20816712518692	4.89418648573306	5.22711314110059	4.54992449721474	4.88775232916428	4.73400024432818	-0.823748141986797	0.0435010075979272	0.262064280351023
Merged-chr9-40806573-4	chr9	40806085	40807085	+	774.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5312.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.921703771013	6.0347779057883	5.71716414742425	6.20384846670338	6.47224037001593	5.78061507308287	0.501523784201616	0.135852753612982	0.492636447425651
Merged-chr6-53566939-4	chr6	53566401	53567401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-6473.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.49529341390143	6.49584441074868	6.3811259992419	6.849288653405	6.95897429709598	6.78714670218184	0.645219929645722	0.0116393642863831	0.111912416483367
Merged-chr15-88514487-5	chr15	88514017	88515017	+	822.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85785.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	7.31006343076582	7.56753140790369	7.27443094176924	7.65383335241616	7.85628851099351	7.47556584991558	0.415676999099024	0.0930912502699863	0.406440169611975
Merged-chr1-59907942-3	chr1	59907448	59908448	+	741.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5058.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.59908359019562	4.41407047654391	4.68222740882421	4.40385013544801	4.50381863697892	4.70986898466844	-0.0618630404718598	0.885905433462974	0.973636976161493
Merged-chr19-46039656-4	chr19	46039173	46040173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-52.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	5.25763230554456	5.42081768193234	5.69831328598398	5.39383797036545	5.70377563336337	5.80790887447244	0.346046702972126	0.325568512767235	0.718159390122652
Merged-chr2-58489738-4	chr2	58489233	58490233	+	836.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	71677.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	3.5808954276144	3.44061708216944	3.38973724227028	3.0281316780596	2.80962918751526	3.11279667697222	-2.29612589108342	0.001212685654612	0.0209390221931844
Merged-chr11-79529859-4	chr11	79529347	79530347	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	762.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	7.91560762511832	8.16623362621187	7.65040386497241	7.96427638825351	8.50177125939342	8.02923729971825	0.368084224962401	0.173114787528563	0.551857854984095
Merged-chr1-105801384-4	chr1	105800887	105801887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	20664.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	5.14700574656333	5.19078487067816	5.0444819799601	4.8523781893047	4.82756000775242	5.14232484126337	-0.420838795372507	0.263502899698749	0.661424153915157
Merged-chr6-97210695-4	chr6	97210186	97211186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022992)	promoter-TSS (NM_022992)	-106.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	6.10466674143411	6.30447143625592	6.31080893502624	6.26806224565935	6.05152511870043	5.49565264448431	-0.426064364787691	0.212748185747378	0.60532101124957
Merged-chr1-39580167-2	chr1	39579667	39580667	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-2820.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	5.86918247145005	5.68629235403482	5.83591418276924	5.45751100082108	5.56529683021224	5.67025592261184	-0.431253991966347	0.173631330028888	0.552782204968004
Merged-chr7-29009303-2	chr7	29008803	29009803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 99 of 105)	intron (NM_009109, intron 99 of 105)	26449.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	3.70036906236244	3.55665657857495	3.73134025355653	3.06734837666136	2.84998894113047	3.21084288877331	-2.85380318972326	8.69363532176611e-05	0.00252576818384607
Merged-chr17-80482404-2	chr17	80481904	80482904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1951.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	6.09243374081723	6.49110992670552	6.26906747673899	6.22866797839758	6.38463043555396	6.32909105052633	0.0319425980098903	0.912235679547587	0.980308748854393
Merged-chr2-128243878-3	chr2	128243384	128244384	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	116309.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.68106212060955	2.87156424157461	2.73649201429502	2.56196211834728	2.40959514754422	2.55583021066618	-1.55084955756794	0.0528058485421726	1
Merged-chr4-123928160-4	chr4	123927663	123928663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 5 of 6)	intron (NM_017475, intron 5 of 6)	10730.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.38193009987611	7.31916634852348	7.21193363086654	7.35060261749547	7.52265627870118	7.10369965596498	0.0559652260487487	0.821141169808423	0.957942312428027
Merged-chr1-95590283-4	chr1	95589778	95590778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	77316.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.18874601514232	6.36891291085186	6.13899354007516	5.90426655037683	6.36014063381843	6.17812620205273	-0.121626871498921	0.688548099286645	0.9172299553909
Merged-chr10-78413016-4	chr10	78412514	78413514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010925)	promoter-TSS (NM_010925)	29.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	7.58704722016009	7.99588813311673	7.15348642851966	7.54811317466892	7.40035383511798	7.34728550407326	-0.291483794595469	0.3137062082264	0.708132564679568
Merged-chr7-141367622-2	chr7	141367122	141368122	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2512.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	3.73681364181577	3.46464247835086	3.75853811101606	3.51840170406593	3.55816010063996	3.82718833057912	-0.0734298308793149	0.89759434278967	0.976055448838318
Merged-chr14-46994973-4	chr14	46994472	46995472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6368.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.09334072063309	5.73816399830456	5.79297108178733	5.92937352414456	6.32060445961928	5.82904343436669	0.294345929192473	0.374473598073219	0.758087520776938
Merged-chr15-59530848-4	chr15	59530341	59531341	+	963.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117813.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.55724797495612	4.30207362018445	4.02297380575116	4.05255410659555	4.07514947012101	3.87778006396006	-0.868156081039788	0.0885785691225079	0.395097325014913
Merged-chr17-35749414-4	chr17	35748848	35749848	+	920.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-23102.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.25363006985959	4.4569890062259	4.50502497072197	6.81357431382939	6.68217977473737	5.79064081063425	4.33837536827709	6.65520129005208e-21	4.94433918698798e-18
Merged-chr16-91792826-2	chr16	91792326	91793326	+	877.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	63455.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.63242417325299	5.73806869103186	5.82187062428732	5.97323685668478	5.91411060928455	6.02305805295233	0.426719379360477	0.155912622016396	0.526009040006524
Merged-chr11-16981480-2	chr11	16980980	16981980	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27238.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	3.14281087255842	3.4370942034081	3.2086448799895	3.11964571791707	3.14505969564819	3.64847196372825	0.195428325352552	0.771541023543087	0.943614978016208
Merged-chr15-79891632-4	chr15	79891142	79892142	+	929.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-766.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	5.74948226400661	6.07720399747439	6.13066219685921	6.20255532946659	6.65153957819288	6.21208071331981	0.673747819037309	0.0350289913668539	0.22970829966663
Merged-chr13-80962987-4	chr13	80962502	80963502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1072.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.48632530042121	6.34298730963028	6.16584698876571	6.07456488403352	5.91258075971275	5.95094962072638	-0.619384526890222	0.0327499083597733	0.220366680802201
Merged-chr15-8224439-3	chr15	8223940	8224940	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 31 of 52)	MTD|LTR|ERVL-MaLR	55334.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	4.20405039892448	3.9550137311965	4.16898947436326	4.03589314404544	3.65957211441588	4.10114988857971	-0.518455795537403	0.323520043372225	0.716736510737982
Merged-chr12-72364733-3	chr12	72364222	72365222	+	825.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	MTD|LTR|ERVL-MaLR	44332.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	2.17326679159276	2.22182252901864	2.20436725022326	2.52384166660775	2.33164440136319	2.47989751537557	1.68946714919278	0.0533087502978977	1
Merged-chr2-128777401-2	chr2	128776901	128777901	+	856.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-40902.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.87766847205061	3.52131530936811	4.30324593534963	4.03757130349525	3.89071124088131	4.20544965916197	0.333816544187683	0.563080786262711	0.865769094061896
Merged-chr3-103874517-3	chr3	103874013	103875013	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104070, intron 6 of 22)	intron (NR_104070, intron 6 of 22)	14236.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.7377882975423	4.829953454585	5.07101806105432	4.93472630049403	5.10848694387881	4.77256138519185	0.174821884608725	0.66033903784273	0.905929432585967
Merged-chr11-29548859-2	chr11	29548359	29549359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-819.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	6.54832813526616	6.87499552152849	6.70790990863184	6.761307915356	6.92568661487563	6.78229609520939	0.171543615442552	0.513349606070163	0.842549813251827
Merged-chr16-32251992-2	chr16	32251492	32252492	+	594.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001185162, exon 2 of 3)	exon (NM_001185162, exon 2 of 3)	4739.0	NM_026898	68980.0	Mm.159860	NM_026898	ENSMUSG00000022787	Wdr53	1500002B03Rik|AI848860	WD repeat domain 53	protein-coding	4.22024115669741	4.28302085324552	4.09287079154422	4.54315977070488	4.6912930794813	4.11211089907675	0.72281059113362	0.136020918922737	0.492905159738987
Merged-chr7-100182589-4	chr7	100182088	100183088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190869, intron 3 of 4)	intron (NM_001190869, intron 3 of 4)	3905.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	4.01142870839978	3.74345344560502	3.93743986253653	3.60303218364127	3.73842762731457	3.53313763245934	-0.873130809702992	0.114918227969958	0.452587804955148
Merged-chr5-36696732-4	chr5	36696229	36697229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081232)	promoter-TSS (NM_001081232)	-708.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	6.36378309065102	6.73502828611969	6.5323742691743	6.80423083927034	7.0600734644333	6.74313222922179	0.515542835964003	0.0622276774170443	0.324101188189623
Merged-chr17-72834797-4	chr17	72834336	72835336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	6.52073652965306	6.5908739765042	6.90477045043943	6.98074667801359	6.94018043022911	6.98980472128405	0.462174189184954	0.0759430973242315	0.362689293121698
Merged-chr11-70594399-4	chr11	70593889	70594889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-21505.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	6.76335298145085	6.70176899325245	6.78651115305312	6.73450054241491	6.86261300957471	6.78440191421266	0.0762796598650856	0.758785876773317	0.940287421764314
Merged-chr11-54093270-4	chr11	54092796	54093796	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7628.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.46190126071982	5.40585232771594	5.3189777816486	5.36848334018221	5.51781321940473	5.38269658649652	0.0564968114400574	0.865862812039772	0.968641478520565
Merged-chr3-136253035-4	chr3	136252543	136253543	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 3 of 16)	intron (NM_001033350, intron 3 of 16)	73023.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.77512274498943	3.63300409741379	3.64644127771274	3.63920768784916	3.59673888145956	3.91550380877335	0.093409044879824	0.865342660357452	0.968641478520565
Merged-chr16-4939086-4	chr16	4938578	4939578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025839)	promoter-TSS (NM_025839)	-33.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	6.87424794460926	7.15497234856961	6.74629320701095	6.84325960096803	6.93907030626871	6.63765684535458	-0.191189765658039	0.479668719156494	0.824363039494411
Merged-chr1-53297119-4	chr1	53296650	53297650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153556)	promoter-TSS (NM_153556)	55.0	NM_145517	227102.0	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	6.36898651533115	6.82277844377575	6.37023490149641	6.31987375780738	6.31780797747692	6.2044648857756	-0.42810594173628	0.146712754350189	0.510992979414413
Merged-chr2-32776283-2	chr2	32775783	32776783	+	968.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	462.0	NM_178595	329384.0	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	4.25685574424686	3.77962003467527	3.81063209570889	3.78173893810375	3.65028170110175	3.8291407330524	-0.701285876324587	0.202730565382356	0.592615664301249
Merged-chr9-56114077-4	chr9	56113591	56114591	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	24115.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	3.25961360292399	3.52400931840628	3.43180526341932	3.38441576377898	3.29215226599862	3.21553580151027	-0.42695331468214	0.487187936899391	0.828352892507347
Merged-chr11-82101672-4	chr11	82101174	82102174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011331)	promoter-TSS (NM_011331)	-171.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	7.38082115049704	7.09348447430366	6.54855145573635	7.28939198848641	7.46262985185458	6.99323369160054	0.306448269450413	0.327665330601081	0.719832527950544
Merged-chr8-61621470-3	chr8	61620986	61621986	+	991.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-30317.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.84111993272325	2.51024667163666	2.86114232793062	2.51213654175877	2.36884409762167	2.75739617600999	-1.09404014475407	0.188921974326205	0.574413224806041
Merged-chr4-31964568-1	chr4	31964068	31965068	+	541.0	f0_c57.idr	intron (NM_009316, intron 1 of 16)	intron (NM_009316, intron 1 of 16)	461.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	6.61483585879497	6.56162934752546	6.59760444334446	6.79585730310414	6.35613088972753	6.73652204356923	0.0711555562295875	0.798142362792523	0.951930937621884
Merged-chr6-97438394-2	chr6	97437894	97438894	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B4|SINE|B4	20892.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.27484779802361	6.56062953709481	6.80778706807984	6.29811114931238	6.69203439188953	6.39706793367384	-0.123748469150209	0.684099768562904	0.915757549873423
Merged-chr1-182517546-4	chr1	182517040	182518040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009794)	promoter-TSS (NM_009794)	70.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	5.92997278339529	5.66564404023183	5.47471618059511	5.09570522989108	4.65937344627702	5.04397219258893	-1.55635353451568	4.40775360789557e-05	0.00142155179149525
Merged-chr3-101596344-4	chr3	101595858	101596858	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	8349.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.47904847210097	7.50015955329373	7.29963682902975	7.0556030987603	7.39668446270786	7.08539808302525	-0.349650702860872	0.160042867486675	0.532631266211954
Merged-chr4-59469923-2	chr4	59469423	59470423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-31290.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.36246752733503	3.15451274183236	3.69911902771545	3.40161770412819	3.09540336294501	3.52291277992624	-0.270720511643256	0.682237495200499	0.915044974923355
Merged-chr17-13760283-4	chr17	13759803	13760803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010806)	promoter-TSS (NM_010806)	-238.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	2.48907777466084	2.64796783365693	2.45701894583672	2.84607352148498	2.45047643399789	2.79098844713205	0.932551939259747	0.254103385339475	1
Merged-chr16-64853150-4	chr16	64852648	64853648	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357416, intron 2 of 2)	intron (NM_001357416, intron 2 of 2)	1147.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	5.56841348865143	5.94575172439719	5.73176726639964	5.84301505192227	6.25360093117761	5.59582610668183	0.322080130819491	0.361710889359418	0.747458707295016
Merged-chr2-120353085-4	chr2	120352578	120353578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027618)	promoter-TSS (NR_027618)	55.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	6.53058169918775	6.63600510865979	6.54221017964094	6.373008767664	6.52284430275794	6.23629044688568	-0.288705713535509	0.286690773580717	0.683936104264423
Merged-chr12-85912536-2	chr12	85912036	85913036	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 18 of 32)	intron (NM_001347395, intron 18 of 32)	87586.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	5.59612459892075	5.5710640500945	4.93689628695976	5.30187025640049	5.00473131606844	5.00462048830374	-0.606061469444529	0.130972649372269	0.483655758340434
Merged-chr15-99018270-3	chr15	99017782	99018782	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11609.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.96583607851893	3.80518028260645	3.74074715797747	3.67885239952806	3.69615400595207	3.64931547540817	-0.554618825501098	0.300057846391291	0.69678536733999
Merged-chr13-67451190-1	chr13	67450690	67451690	+	884.0	f1_balb.idr	intron (NM_177712, intron 1 of 3)	intron (NM_177712, intron 1 of 3)	434.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	4.49334906646741	4.75893008456336	4.74746390150019	4.95851320058779	4.73288135255385	4.61191554670689	0.25806657072866	0.536051571797457	0.853846958834865
Merged-chr13-99175319-3	chr13	99174809	99175809	+	821.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9514.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.07771711284831	4.32630124000761	3.79518882630846	4.3468665955488	3.86562784386604	3.92403481537843	-0.0767356194624043	0.888955765401628	0.974207858658472
Merged-chr19-41981381-4	chr19	41980859	41981859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145500)	promoter-TSS (NM_145500)	-223.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	7.65123501543922	7.67179703583391	7.69587027631626	7.63371427160688	7.68923499801439	7.67202374467563	-0.00943132594878056	0.96491813659297	0.991702308059621
Merged-chr9-51008036-2	chr9	51007536	51008536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1037.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	6.49993293941641	6.67596288365246	6.09443109401754	6.45670605895262	6.56913631585932	6.39251748370914	0.0312311676580956	0.9163300395535	0.981243905880233
Merged-chr9-24513423-2	chr9	24512923	24513923	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10283.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.98325311671019	3.88497382547004	4.18225644482654	4.00857227120157	3.79648772380025	4.02382947797859	-0.224480115910992	0.658922756839765	0.905124111161976
Merged-chr1-165679829-3	chr1	165679281	165680281	+	786.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	28313.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	6.85110631516242	6.1417850327957	6.75781768235597	6.08902556609255	5.94883062653996	6.01513299598206	-0.99240895782987	0.00231050296243756	0.0344970986001264
Merged-chr19-55714114-4	chr19	55713584	55714584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11880.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.87801354456777	5.75960690096917	5.91528196476498	5.34001930302573	5.13299504812186	5.12377226520491	-1.23206653181362	0.000224972402399643	0.00550897694492923
Merged-chr2-48814002-6	chr2	48813490	48814490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007396)	promoter-TSS (NM_007396)	-119.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.90366673366382	6.68920769500662	6.80649214184939	6.94344902339998	6.66260605573246	6.70967545517671	-0.0389698101094733	0.881242149582161	0.972635980891511
Merged-chr8-10005838-2	chr8	10005338	10006338	+	655.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347309)	promoter-TSS (NM_001347309)	-629.0	NM_001347309	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	3.66982276970211	3.69495073157861	3.61299205489151	3.93704154394145	3.56774038133128	3.45371209167821	0.039436641709542	0.945568940752514	0.987919544231428
Merged-chr7-16175351-4	chr7	16174866	16175866	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-29.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	5.72691769911362	5.96061933019976	5.74222405806019	6.25727540227594	5.93417061057315	5.77786649492565	0.336007392340721	0.29686860679314	0.693501867936875
Merged-chr13-23683524-2	chr13	23683024	23684024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290380)	promoter-TSS (NM_001290380)	435.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	7.30975716372726	7.50541543711211	7.38518576032128	7.21208076488345	7.45939603942069	7.31006682203502	-0.101277646687739	0.668439482476075	0.909204788456481
Merged-chr16-24427052-2	chr16	24426552	24427552	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	RMER15|LTR|ERVL	-21039.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.04054417072894	3.83793340957524	3.63749651281647	3.80904755697658	3.88014362899019	3.81909394529226	-0.0603295227153726	0.910414759965476	0.97984424692051
Merged-chr4-85005776-4	chr4	85005283	85006283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 11 of 25)	intron (NM_175275, intron 11 of 25)	121474.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	4.6669540791192	4.69135184996703	4.62214293417521	4.49580088347442	4.8849155451197	4.87913535728496	0.243423146886679	0.558970545724214	0.864901733108576
Merged-chr11-115164051-6	chr11	115163525	115164525	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	CpG	684.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	7.56698745552152	7.51762293864779	7.25292554425772	7.6146764304409	7.75550597738232	7.29828909393686	0.174833865952601	0.490809287721977	0.830181469396006
Merged-chr13-46929499-3	chr13	46928982	46929982	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 1 of 37)	CpG	236.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.87875869381387	5.24101802717603	5.44848080649098	5.56010333107709	5.12844480652817	5.64258334387744	0.497894099536519	0.20846626569465	0.599338713147689
Merged-chr1-168431565-4	chr1	168431118	168432118	+	764.720825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291509, exon 1 of 7)	5' UTR (NM_001291509, exon 1 of 7)	551.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	4.64885691944957	4.36139262459206	4.37660953597791	4.28300789363752	4.58987429845324	4.48803810387207	-0.023097005923401	0.959031763314571	0.990174309444982
Merged-chr5-113841204-2	chr5	113840704	113841704	+	828.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10703.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	3.97148121967708	3.98420084377837	3.81057934851885	4.35816977393158	3.98308240851013	3.88285891726407	0.485065238014073	0.352665587335991	0.740209160221368
Merged-chr10-8781146-1	chr10	8780646	8781646	+	695.0	f1_balb.idr	intron (NM_175155, intron 7 of 19)	intron (NM_175155, intron 7 of 19)	104924.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.83768701807251	2.53024913519833	3.06297481543628	2.94343705394756	2.60554036973083	3.29433721163117	0.690902234129791	0.403206506910563	0.7786392273258
Merged-chr7-18840224-2	chr7	18839724	18840724	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153760, intron 1 of 4)	RMER10B|LTR|ERVL	258.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	5.10489785794439	5.27668939670465	5.46917205954688	5.88255199132003	6.08277671322568	6.03319110253253	1.3426046518309	3.96812272851011e-05	0.00130145666532861
Merged-chr12-99566979-2	chr12	99566479	99567479	+	978.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	3138.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.26727098052806	2.96343249677754	3.32336503143976	3.29266411039841	3.3901465384594	3.44835851054964	0.760436991188112	0.237274594741866	0.633672456067794
Merged-chr14-64692042-2	chr14	64691542	64692542	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 2 of 39)	intron (NM_001081177, intron 2 of 39)	39511.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.38941887825094	4.62493844605972	4.04814608871877	4.31438833771196	4.00803184045229	4.17030771323932	-0.587242847981263	0.239545948857284	0.636469662373399
Merged-chr11-120086902-4	chr11	120086381	120087381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009734)	promoter-TSS (NM_009734)	-54.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	4.89284933134059	4.75903366769992	5.05611777614152	4.76085858001187	4.32849622381571	4.84871599830898	-0.572465351282485	0.186244191301734	0.570803258887202
Merged-chr16-30976912-2	chr16	30976412	30977412	+	696.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	104520.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.57553240506776	4.15561254764273	4.79449508191552	4.58641803725393	4.50412764963261	5.05446003333139	0.478960524292663	0.321052580301465	0.714702314241648
Merged-chr8-105938471-2	chr8	105937971	105938971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013640)	promoter-TSS (NM_013640)	-79.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	6.09842973003805	6.309670473081	6.51006871959184	6.53365737473416	6.98856992302824	6.42404931331831	0.60518962604152	0.0498999075219602	0.284310964531695
Merged-chr8-37042950-2	chr8	37042497	37043497	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18759.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	2.78656640709371	2.80594727602079	2.79580012815236	2.87553789624798	2.80393407253576	3.04664987022687	0.552450556423673	0.434037666589516	0.79814689082248
Merged-chr16-4767698-2	chr16	4767198	4768198	+	831.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358082, exon 6 of 6)	3' UTR (NM_001358082, exon 6 of 6)	10752.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	2.46822012849618	2.32242712952279	2.76039912259005	2.35467289918544	2.21588350865173	2.59831127819906	-0.790962049335625	0.366190259838198	1
Merged-chr16-4881521-2	chr16	4881021	4882021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1670.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	6.7460103906454	6.9878384051768	6.81653089263555	6.83330739474087	6.95083351343003	7.00183435514625	0.110739334408139	0.659686907600012	0.905586631697299
Merged-chr16-35898229-3	chr16	35897736	35898736	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-26854.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	4.63055948777826	5.04003153990018	4.70498026740298	5.06590119418067	5.18686202439302	5.26928040378195	0.773735598509224	0.0514576765189381	0.289206589557218
Merged-chr13-91452476-1	chr13	91451976	91452976	+	634.0	f0_balb.idr	Intergenic	Intergenic	-8621.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.15063591179913	3.16821812274527	3.3934193474113	2.78406812224909	2.80596792491645	2.96461167229886	-1.88496899600272	0.0086069734908481	0.0907922223917962
Merged-chr12-119356916-4	chr12	119356426	119357426	+	820.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86484.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	4.78676933627846	5.06187835711467	5.0711009409489	5.26045545444961	5.3098989043696	4.99300070543935	0.478948301575727	0.205817734766351	0.596447652812717
Merged-chr19-34421289-3	chr19	34420736	34421736	+	560.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53899.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.72768085487687	3.65947546835703	3.41550859689378	3.91144237669352	3.84336241888775	3.66593490262465	0.660812244899267	0.242729809579265	0.639856233026184
Merged-chr1-152043664-3	chr1	152043169	152044169	+	899.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	46651.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.07031334134842	2.72766717306608	3.12393890400037	2.76869615365546	2.58654904268982	2.72134928750411	-1.51940081033115	0.0486078851215983	0.279830091064933
Merged-chr4-89353355-1	chr4	89352855	89353855	+	921.0	f0_balb.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42323.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.08106883692223	3.02619951546876	3.33269039945672	2.92458748000231	2.79628301513962	3.01711056940675	-1.11365781068171	0.109695699636193	0.442634196951085
Merged-chr13-4191173-4	chr13	4190679	4191679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013778)	promoter-TSS (NM_013778)	-8.0	NM_013778	27384.0	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	4.85648062115146	4.67522352497817	4.79741251575991	4.82497562235462	4.85149557908503	4.78634516158598	0.106084500489035	0.786028104391475	0.94829384529804
Merged-chr9-67839548-2	chr9	67839057	67840057	+	660.5	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-839.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	4.68291443528848	4.76877177916996	5.02453001509334	4.31516441903413	4.31574548251382	4.32829043190538	-1.24610967431253	0.00410025549984293	0.052911609744251
Merged-chr15-33183874-4	chr15	33183395	33184395	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	100766.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	5.74914618909879	5.93069128164882	6.05123196403593	5.96855972265741	6.24222059643746	6.31280966035566	0.467866245752185	0.12411829188076	0.471452334100897
Merged-chr17-31305646-4	chr17	31305148	31306148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	9424.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	6.2921078657621	5.92160820736416	5.70190820475912	6.65197809054197	6.41740068927004	5.70601662555372	0.541455638059359	0.154402447702531	0.523666674943519
Merged-chr11-100354759-2	chr11	100354259	100355259	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 1 of 12)	intron (NM_001359052, intron 1 of 12)	1369.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	3.54619610771933	3.45677602222859	3.39597557772575	3.41552817123676	3.44421149695282	3.41070706413974	-0.1737296634009	0.765244671898693	0.942137701159565
Merged-chr5-67816891-2	chr5	67816391	67817391	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	30540.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.25883143751233	5.00192874322722	5.34673612880882	5.22546542569898	5.43718570540419	5.46743145350877	0.355870831689375	0.320283391678889	0.714117217900186
Merged-chr18-46519667-2	chr18	46519167	46520167	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	Lx6|LINE|L1	6304.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	3.71367858577942	3.76442056588258	3.9368781059478	3.55881582230335	3.71725238370046	3.86345757523646	-0.288665846515083	0.594144173859142	0.878842878041553
Merged-chr1-151025331-4	chr1	151024838	151025838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-31903.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	5.13862479434758	5.41664986750765	5.31643491470903	5.32872001719118	5.18747741982494	5.34907629784075	-0.0230671561302483	0.947665713420243	0.988008807662239
Merged-chr9-45297468-2	chr9	45296968	45297968	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21632.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	5.44769305571203	5.58264111833782	5.59816171471549	5.7133725164514	5.56137364203009	5.73920205084432	0.234501959095617	0.464260810088843	0.816240486104602
Merged-chr11-20430806-1	chr11	20430306	20431306	+	616.0	f1_balb.idr	Intergenic	Intergenic	-98093.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	2.12716748593043	2.27656310968614	2.30489306265272	2.58908571794173	2.53603901390025	2.82189422154701	2.92357959747454	0.00252608676817572	1
Merged-chr11-68430686-4	chr11	68430197	68431197	+	960.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.56679693191087	7.01379442252422	6.52219063479466	6.31724488269046	6.59061281164119	6.54611957506506	-0.378413846196533	0.197660826249362	0.585805105555675
Merged-chr1-152595465-2	chr1	152594965	152595965	+	619.291626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	29752.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.31374432331928	6.01361832792305	6.41708940339904	6.35806358340181	6.11467983595741	6.30983433856013	0.0141455277917667	0.961924850266639	0.990691557558141
Merged-chr17-34119415-4	chr17	34118889	34119889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 1 of 13)	non-coding (NR_037970, exon 1 of 13)	511.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	7.94000530659143	7.52005364600449	7.33770245945858	7.6272581481154	7.48913429984274	7.54497597903681	-0.114532669076178	0.660878118347035	0.906190308182195
Merged-chr1-138135541-2	chr1	138135041	138136041	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	L1MA4A|LINE|L1	39585.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.7442127158935	4.88930109047376	4.86620559791073	5.03725291679576	4.49988085839636	5.06911553252286	0.111449039023408	0.793746816499196	0.950531747588938
Merged-chr9-22156791-4	chr9	22156310	22157310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-36.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	7.3366370729098	7.23653247961242	7.23498725954166	7.52229407145942	7.17920046068952	7.17053788387905	0.0468514872767405	0.849179581199546	0.964608463945227
Merged-chr9-7345680-4	chr9	7345184	7346184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	1287.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.17933752928134	6.41472197698747	6.37003888746053	5.68318319321538	5.93123379364955	6.28132984884892	-0.586145576208977	0.063829158495113	0.329166198950193
Merged-chr3-100734765-4	chr3	100734270	100735270	+	959.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-49297.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	2.81332146228127	2.83259295732154	2.82476427121568	3.02776829228184	2.750038860695	3.07678421988351	0.634991489931484	0.373063875220957	0.756999545058357
Merged-chr1-36270800-4	chr1	36270294	36271294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	2631.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	6.72813018340608	6.66427443724396	6.68875301221797	6.84664346368895	7.09103685619985	6.77947902052927	0.354658479423507	0.167519463984629	0.543429222582182
Merged-chr5-88565232-1	chr5	88564732	88565732	+	1000.0	f0_c57.idr	exon (NM_001289775, exon 1 of 13)	exon (NM_001289775, exon 1 of 13)	192.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.96252391386545	7.77573125447307	7.76923985688418	8.04638392787662	7.54946770241138	7.80020175430213	-0.0399201212216926	0.871003769566936	0.970222087171093
Merged-chr1-191202441-2	chr1	191201941	191202941	+	792.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-19108.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	5.31278324942164	4.87689141913651	4.63038985285481	4.62191349340793	4.56370012607292	4.32087728990835	-1.0718930052906	0.0187796628795235	0.15514477649716
Merged-chr16-91358640-3	chr16	91358128	91359128	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14155.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.47553615424736	4.49788972104157	4.47844545144741	6.40106866207021	6.67286456276762	5.59818485436029	3.68267247435395	1.18572587657823e-16	4.54663035660469e-14
Merged-chr10-20077301-4	chr10	20076818	20077818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71602.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.79010727846991	6.66685919668177	6.22223056614041	5.86775501428206	5.85671343441319	5.7405036917834	-1.28531432274398	3.12384443188512e-05	0.00106615606024732
Merged-chr15-72809201-4	chr15	72808712	72809712	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1112.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	5.59411095325795	6.04304073888525	5.81814917529575	5.44493194972236	5.89716102142969	5.95032929027483	-0.0919112981374942	0.791728057882094	0.949809355728628
Merged-chr18-14783924-4	chr18	14783418	14784418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100449, exon 1 of 15)	exon (NM_001100449, exon 1 of 15)	673.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	6.98562061937318	7.16553349148301	7.06751519827042	7.01617919332873	6.7358592298377	6.70416364873581	-0.379213136276324	0.137876411553454	0.496297821964863
Merged-chr11-80327514-4	chr11	80327012	80328012	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 4 of 8)	intron (NM_139228, intron 4 of 8)	26600.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	4.82943256856453	4.94716459009083	5.15273495184411	4.98749591420078	5.16960481679424	5.21611738779775	0.325603451652685	0.386387181808659	0.767113755909782
Merged-chr5-121841491-2	chr5	121840991	121841991	+	769.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4632.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	5.37819316108083	5.48044679616068	5.36000138860935	4.86101649358665	5.17048683813153	4.98805404899029	-0.789212787002318	0.0303370937203485	0.210427550373688
Merged-chr6-125422491-4	chr6	125421979	125422979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-41975.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.41513486842607	3.89904364237782	4.13556864529437	4.44027375436607	4.24768940497638	4.29837588940631	0.430537213110258	0.383625594234584	0.76494131641868
Merged-chr11-83655870-4	chr11	83655385	83656385	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6507.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	4.49030889673283	4.01337778734961	4.28431382550107	4.17764003679012	3.90065412090534	4.26383601091831	-0.451770016294797	0.371176258205265	0.755352037095081
Merged-chr16-37689442-4	chr16	37688948	37689948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-35080.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	2.85235991332037	2.8719569650982	3.11181974897999	2.69835711828999	2.78484429881004	3.33881350686071	0.0934575150046544	0.902793108011274	0.977585531827525
Merged-chr15-79688604-2	chr15	79688104	79689104	+	886.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-732.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	8.06872964582675	8.30338814113138	7.67322493273928	8.11876218415379	8.43659162993857	7.86606034386695	0.169691870419217	0.539633871354013	0.856052391666911
Merged-chr19-6045379-2	chr19	6044879	6045879	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1197.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	4.7538877988289	4.53874875933374	4.53972841844076	4.71011179450444	4.58286549204264	4.72797275735104	0.12257762999241	0.767102314908188	0.942573703853445
Merged-chr1-85270148-1	chr1	85269648	85270648	+	799.5	f1_balb.idr	5' UTR (NM_001037909, exon 1 of 7)	5' UTR (NM_001037909, exon 1 of 7)	418.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.27309703512234	3.35933521083872	3.59239147092506	2.75181510474676	2.71045901237728	3.30884973911327	-1.87988427273184	0.177624362004763	0.558706727133464
Merged-chr15-53414998-4	chr15	53414478	53415478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-68795.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.05486768002403	6.95737435247842	7.15048676539655	6.89609380305143	7.2904845325319	6.90269181608914	0.00250389689985982	0.992396600778223	0.998523796268552
Merged-chr4-16169800-2	chr4	16169300	16170300	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	MER90a|LTR|ERV1	5690.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	4.02924649324899	4.37286454236948	4.3394729529267	4.39382106889123	4.19713672294411	3.92066473880986	-0.173429758019514	0.729990078555731	0.930720808358785
Merged-chr5-123670717-2	chr5	123670217	123671217	+	894.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13644.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	7.11501630664998	7.50429259114728	6.72890169223201	7.60442135390525	7.83880523088075	6.77082729641492	0.480979326736277	0.392613056768052	0.771214636708298
Merged-chr12-85305674-4	chr12	85305179	85306179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 19 of 21)	intron (NM_145138, intron 19 of 21)	17088.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	6.61643874814184	7.00828852574829	6.76373907772896	6.979284353524	7.25362523949648	6.83757696626977	0.363845033752626	0.188867462311142	0.574389027923446
Merged-chr13-60435113-3	chr13	60434618	60435618	+	884.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166829.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.05298211236683	3.9750693657999	4.02934621449966	4.06552078320182	3.88243491762495	4.09780440244199	-0.0213513394803923	0.965345606495585	0.991905127504132
Merged-chr3-51416646-4	chr3	51416132	51417132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	CpG	616.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	8.21969202601868	8.59501492074097	8.47270754108768	8.42080014581183	8.35124037866814	8.3286836104371	-0.0992119227314927	0.650348238222486	0.902576889668442
Merged-chr14-54750749-3	chr14	54750248	54751248	+	908.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	31138.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.01981091811089	5.08079300841387	5.48877670512105	5.13053060395782	5.13113742881128	5.03118159970502	-0.202883140730241	0.592519764473805	0.878063448366602
Merged-chr14-69861597-4	chr14	69861087	69862087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	21180.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	3.4925697736046	3.88034128745864	3.33211527343179	4.04526245484626	3.60775453410439	3.759104725081	0.720913099490754	0.250784155444923	0.648153521953385
Merged-chr15-59729013-4	chr15	59728517	59729517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	65942.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	8.43539702418184	8.43874215423896	8.0589978567749	8.21171571843125	8.55323173964797	8.19269861163321	0.00983278981482668	0.967457350169086	0.992555129128888
Merged-chr4-143211751-6	chr4	143211207	143212207	+	832.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1002.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	6.13557426851931	6.36575777806146	6.53430027646569	6.45449331699286	6.36404574680707	6.62575091040944	0.214495525893242	0.452600885364669	0.809456767794566
Merged-chr2-22822996-2	chr2	22822496	22823496	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48669.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.31571325740942	5.12897792167016	5.02860611696683	4.80962384513518	4.66257962076574	5.09323181201336	-0.681441810142698	0.0826350226060087	0.380301384398778
Merged-chr2-153632725-4	chr2	153632242	153633242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	39.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	6.57922729695591	6.93086260315106	6.86961911383209	6.40444513632804	6.3541044590489	6.39094650135891	-0.668295325893004	0.0135966586178269	0.124337923977595
Merged-chr7-97094433-4	chr7	97093930	97094930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	MLT1G|LTR|ERVL-MaLR	12679.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.29240073824518	4.34547601701225	4.13252875866665	4.33821666386895	3.93215456297514	3.9466314582568	-0.493962327263174	0.321231760810291	0.714795217240806
Merged-chr17-32534278-4	chr17	32533778	32534778	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	2.93867737534141	3.05425284452474	3.01025119696728	3.00634083488104	2.81055696749335	2.96306833399395	-0.364549341335225	0.594327791161861	0.87898947489373
Merged-chr15-100552037-4	chr15	100551510	100552510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033476)	promoter-TSS (NM_033476)	-2.0	NM_001289603	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	6.57245403236664	6.43595494966357	6.4382586200835	6.58420242616099	6.35709618177622	6.46101472130042	-0.0294912397974186	0.912509044369502	0.980364960151991
Merged-chr4-137354515-1	chr4	137354015	137355015	+	707.0	f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	3244.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	5.73568979831783	5.71656979877097	5.44151633533166	5.67564060784348	5.8020069133625	5.86173618697978	0.238851861060736	0.455627261710003	0.811069747178527
Merged-chr3-136426741-4	chr3	136426250	136427250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22599.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	6.0578730409153	6.05726619807936	6.35228229429798	6.20863164849068	6.47256965105387	5.9648139042627	0.153934680764747	0.620289018719087	0.89005211387168
Merged-chr8-68208046-4	chr8	68207537	68208537	+	708.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-68491.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.01133161328483	4.8029956671229	4.63035281768499	4.83297214041508	4.92945457966625	4.93458581450275	0.145778270251335	0.713796226543933	0.925599802465018
Merged-chr9-59294369-4	chr9	59293876	59294876	+	958.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2804.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	6.043793320432	5.76424984861001	6.28189595117349	6.26888385957365	6.31774537209446	6.22377411060865	0.403984331501998	0.18355235985705	0.566825684946619
Merged-chr2-167752999-4	chr2	167752504	167753504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61827.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.87518593734373	7.94909176250793	8.1132131419999	7.82332682143198	7.81752456576829	7.75255691024824	-0.255784774071125	0.238096740636988	0.634690163662674
Merged-chr4-139198810-1	chr4	139198310	139199310	+	1000.0	f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4699.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.79352647017872	7.80757107783583	7.76270770640371	7.66950901569144	8.18769428576193	8.03751428576325	0.282571598058448	0.242661804401339	0.639785480506262
Merged-chr12-76549374-3	chr12	76548807	76549807	+	810.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	L2c|LINE|L2	-1382.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.5848951443972	3.52053354539559	3.70173015586673	3.72255412246031	3.44483114029164	3.44944550464258	-0.19380388996265	0.735943767469402	0.932998278386111
Merged-chr11-84290761-6	chr11	84290307	84291307	+	888.673584	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 28 of 53)	intron (NM_133360, intron 28 of 53)	95369.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	6.88724990424028	7.16753336726204	6.70770870335159	7.15622922322532	7.36055520024629	7.10563632653386	0.411836006165869	0.121166330708971	0.465552643407463
Merged-chr6-55198607-2	chr6	55198107	55199107	+	966.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4776.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	2.00378240830111	1.9755033442349	2.26762571517387	1.9415245565496	2.03154900527272	1.94849511295698	-0.840340155410296	0.380037295779602	1
Merged-chr16-35939866-4	chr16	35939375	35940375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	-848.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	6.71999580665585	6.85793167881855	6.43101671118014	7.04773111330141	7.3412080980871	6.60638572075776	0.547788018903395	0.0751806771590511	0.36108842541435
Merged-chr6-134559753-3	chr6	134559285	134560285	+	974.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	7128.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	5.2351652758519	4.97150042803375	4.94953409455855	5.55120052419612	5.63986660172168	5.65079650933091	1.08130078537496	0.00208588796158448	0.031903490575102
Merged-chr2-51096026-2	chr2	51095526	51096526	+	962.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53085.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	2.98177201688271	2.84711369239781	2.71444513257636	2.76986373756923	2.76360584242219	2.91325484595119	-0.216175549536262	0.765301048819147	0.942137701159565
Merged-chr8-108612166-4	chr8	108611661	108612661	+	963.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27484.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.37978047394256	4.58896573169656	4.29874021572668	4.24293282346776	4.2585026046259	4.27478721814672	-0.467074378859645	0.301146337765518	0.697832919482934
Merged-chr11-102431186-4	chr11	102430708	102431708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	886.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	7.98094093383437	8.01207583511315	7.6319464032382	8.15506680353561	8.39181799950928	7.89556396043833	0.393273976930665	0.117931624200167	0.458608897810324
Merged-chr1-157008861-3	chr1	157008362	157009362	+	977.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69236.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	7.0153186170422	6.79113845549312	6.07615532145098	5.91914403848838	6.25155084985951	6.09017636555434	-0.97461897174107	0.00504342300484368	0.0615869007025291
Merged-chr19-59344468-4	chr19	59343977	59344977	+	789.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	1303.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	4.20850526615313	4.17339903301485	4.34541588737569	4.53161914493241	4.30897480055306	4.4967298085662	0.542041240252248	0.227782319096341	0.622912839439754
Merged-chr15-79694005-3	chr15	79693520	79694520	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	intron (NM_013818, intron 1 of 11)	3124.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	5.07242228158197	5.33854041678609	5.53698507415154	5.86049836944394	5.95325020680492	6.17682303541373	1.25627179855873	0.000216564458333989	0.0053408107436439
Merged-chr15-84230810-1	chr15	84230310	84231310	+	651.666687	f1_balb.idr	Intergenic	Intergenic	-1233.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	3.50629448905996	3.41777079279136	3.74096429552668	3.52996507542288	3.39227777881735	3.39062831447679	-0.423753923096881	0.471610486503566	0.820151009697342
Merged-chr10-8875993-2	chr10	8875494	8876494	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	ID_B1|SINE|B4	10076.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.10659909804803	7.03220631370717	6.87999255389498	6.8608478818445	6.9797289074333	6.78664267232812	-0.200881245972064	0.419603533381387	0.789101346301465
Merged-chr6-86850285-2	chr6	86849785	86850785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	768.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	6.43286312998983	6.62070140690462	5.96565113536672	6.22937791690579	6.26307889611578	6.100458439834	-0.295658116736403	0.345100062112031	0.733650637920742
Merged-chr6-106283898-4	chr6	106283388	106284388	+	962.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	165123.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	2.05858389163057	2.34162994666547	2.29606139264814	2.58879283785735	2.29556931941559	2.50360673756183	1.50915989590981	0.104419322070209	1
Merged-chr2-4559665-4	chr2	4559172	4560172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-82.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.96567192771011	7.27607803635341	7.2061406759793	7.41105126703515	7.56526567031819	7.16506483578008	0.363184618277839	0.155142153890701	0.524652239013917
Merged-chr10-119057936-1	chr10	119057436	119058436	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-7437.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	2.92211057259295	2.93635023176285	2.96794960441073	3.10349845197995	2.87840068394454	3.09943290767559	0.398422500096477	0.556998462111585	0.863958195677929
Merged-chr5-146730067-2	chr5	146729567	146730567	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64889.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.81301537772268	2.63724576131561	2.91215236084557	3.03244913911549	2.7439087224409	2.92538608962727	0.575911504089938	0.430558152735561	0.796360788068121
Merged-chr8-115537078-3	chr8	115536549	115537549	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169845.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	2.782505075663	3.05394161603385	3.2044441523407	2.98761126471607	2.76697417524765	3.16664537259107	-0.194409139400277	0.789017763822488	0.949092571737679
Merged-chr14-54407607-3	chr14	54407158	54408158	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	(TA)n|Simple_repeat|Simple_repeat	1814.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.22968334478568	6.91351333597582	6.63066709683056	6.32507229947225	6.34665598063679	6.04160151451812	-0.604165227529918	0.058926214447803	0.314201316162123
Merged-chr2-50670583-4	chr2	50670101	50671101	+	788.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-239083.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.56633324444528	3.34863565199523	3.62213155140597	3.42046773125325	3.06139653679342	3.37389851801033	-0.874289316053091	0.167912812504935	0.544130536211812
Merged-chr10-12922695-4	chr10	12922206	12923206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038027, exon 1 of 4)	non-coding (NR_038027, exon 1 of 4)	421.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	5.89665264109725	6.21719251340529	5.94559479494224	6.01369443134033	6.21052659572048	5.77736855382318	-0.0127671829596912	0.96793805988988	0.992633833139547
Merged-chr10-78455605-3	chr10	78455095	78456095	+	776.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	9353.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	3.6692155976345	3.55207556528202	3.58453730927979	3.51838911164639	3.18053470923824	3.37842261815266	-0.908654801800526	0.131498734538663	0.484813093335686
Merged-chr6-86487401-4	chr6	86486902	86487902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040292, intron 1 of 1)	intron (NR_040292, intron 1 of 1)	825.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	7.04004914047964	7.21260231777597	7.4236644233686	7.29055923217087	7.6495172240789	7.16347731367169	0.245428455804594	0.360048320914783	0.746304478655737
Merged-chr2-13271442-4	chr2	13270945	13271945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009105)	promoter-TSS (NM_009105)	-30.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	6.25200555886762	6.26775667955914	6.17200913371898	6.22783159387742	6.41501775896696	6.25342350671307	0.121181485837026	0.661362676747703	0.906361842130952
Merged-chr18-24603844-4	chr18	24603364	24604364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139143)	promoter-TSS (NM_139143)	-47.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	7.17435297404856	7.60828634290315	7.23748265017413	7.14915697534405	7.14612063586725	7.01339740483987	-0.377558533989068	0.141938776530318	0.502957231817335
Merged-chr12-102422043-2	chr12	102421543	102422543	+	633.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	B4|SINE|B4	17770.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.14733988619783	5.60583404608126	5.91910315675228	5.40866213463237	5.22534160830142	5.40499317092213	-0.463143284352001	0.227498915632895	0.622644333537758
Merged-chr8-11475895-4	chr8	11475404	11476404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2025.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	7.221007573794	7.26486731686563	6.8820903767223	7.30736594333532	7.15745056922544	7.02742510879941	0.0439808878265495	0.863918552002844	0.968269312109804
Merged-chr6-145244443-4	chr6	145243948	145244948	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 2 of 4)	intron (NM_021284, intron 2 of 4)	5783.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	6.34646512909548	6.28500019472456	5.82870669703205	6.20086309773839	6.39019535961719	6.13790766121079	0.11249062988751	0.716958233919907	0.926935793408966
Merged-chr13-44483633-3	chr13	44483141	44484141	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	43914.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.85539864553914	4.68336056461744	4.79727197296121	5.33060647709331	5.48384060937119	5.25844447116071	1.24392612590643	0.000751898344756797	0.0144623110195385
Merged-chr5-139344713-2	chr5	139344213	139345213	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	453.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	5.12869867185313	5.06869222246173	5.44987740277591	5.31875155145603	5.34428212030779	5.30693099484101	0.224614012448936	0.52888666208911	0.850585575598857
Merged-chr4-129640200-3	chr4	129639659	129640659	+	830.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005506, intron 1 of 9)	intron (NM_001005506, intron 1 of 9)	646.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	6.11851276846207	6.20755805179948	6.47980392080674	6.17934941202986	6.08918193922104	6.38153634245566	-0.0913643583306766	0.756385507702425	0.939573416808291
Merged-chr4-141874349-4	chr4	141873850	141874850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	570.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	8.23182266700564	8.39055255908397	8.27761078793099	8.4727815782796	8.4514136711197	8.28313970269269	0.147511524971643	0.47755877312596	0.823237639056184
Merged-chr18-44382394-1	chr18	44381894	44382894	+	542.0	f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	B3|SINE|B2	1894.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	4.48255976831855	4.31724749357582	4.37024322048298	4.4026529144648	4.63494933500256	4.48161508975156	0.311443606288381	0.475590123329169	0.822059938328444
Merged-chr12-55414904-2	chr12	55414404	55415404	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	16079.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	5.21097494365199	4.98098691149273	5.58667939624179	5.1769217253802	5.26984376198308	5.46367673960864	0.0668248049607305	0.861270811934653	0.967789299492425
Merged-chr12-57230412-4	chr12	57229914	57230914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037746)	promoter-TSS (NM_001037746)	2.0	NM_001037746	328099.0	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	7.73619688384443	8.13688631211901	7.41671663917047	7.8139180735048	7.90705717650612	7.64043596739626	-0.0169988350390929	0.950240389449272	0.988400419899929
Merged-chr6-91691747-2	chr6	91691247	91692247	+	748.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	7680.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.72130073140077	2.57710671928557	2.78063406192452	2.78590336802239	2.32760708151843	2.91301097367645	0.0345614852796094	0.967742719165921	0.992594535508871
Merged-chr10-20696768-1	chr10	20696268	20697268	+	732.0	f0_balb.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	28310.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.18829956212445	4.06539114864321	4.30727400244591	4.12872270862139	4.08379545327204	4.19945441123051	-0.141271065775398	0.764510813734366	0.941979298344481
Merged-chr6-149375310-4	chr6	149374817	149375817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33667.0	NM_001112796	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	5.85453933219507	6.09414470882569	5.64710674486833	5.95234381247861	6.23877623116705	5.82157890075321	0.241234721845683	0.462819189679618	0.815451584827553
Merged-chr6-82740396-3	chr6	82739914	82740914	+	921.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 7 of 17)	intron (NM_013820, intron 7 of 17)	34040.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.07188096099687	3.08106286335006	2.90032645389639	3.33548132331378	3.11650517294717	3.33514243202725	1.02403782394128	0.126603792538838	0.475549804679232
Merged-chr16-17183045-2	chr16	17182545	17183545	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	MT2A|LTR|ERVL	18447.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	5.47616310171929	5.63894589682985	5.64223269675361	5.66304911292855	5.54830114806064	5.87725156225288	0.19806175958742	0.543184592995191	0.857519942587205
Merged-chr16-36633780-4	chr16	36633283	36634283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32294.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.63074233886745	6.30659919716905	6.81662727675798	7.01905918829796	6.84675386629438	7.02447182730316	0.578687807442714	0.0365260246558245	0.235164729568836
Merged-chr16-22266678-2	chr16	22266178	22267178	+	922.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	-673.0	NM_001330555	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	5.5094381541416	5.54586607990782	5.56518139383934	5.59015978287494	5.85625771158166	5.51191555754643	0.252104597865762	0.442364008065339	0.803209439640776
Merged-chr12-59130850-2	chr12	59130350	59131350	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-603.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	9.41046364625558	9.81550871757262	9.27050963768694	9.27729683594782	9.66345660856405	9.14952742441613	-0.184992658485324	0.466014053046747	0.817284254190344
Merged-chr8-104371300-3	chr8	104370793	104371793	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	B1_Mur4|SINE|Alu	24514.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.98722933143286	5.87245636140402	6.19998149075546	6.14289085572275	6.52165130510173	6.39429950823574	0.588186527963297	0.0494797899003911	0.282827118089699
Merged-chr2-30063730-2	chr2	30063230	30064230	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	1734.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	3.90848564844883	3.97805321009467	4.27497733368567	4.24007456275175	3.90684332052529	4.02856026714946	0.0270671240185238	0.957635664509872	0.98996830630481
Merged-chr6-145303800-4	chr6	145303307	145304307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53255.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.55159050988247	8.84699715010252	8.70697967888375	8.75258495702154	9.07022125734873	8.67562210116593	0.194182570316507	0.391067575461002	0.770112153342334
Merged-chr6-145803054-4	chr6	145802552	145803552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5331.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	8.16825179157728	8.21286472243545	7.39569952215205	7.16462411705659	7.43962390357659	7.12886010307046	-1.05392785441846	0.000391091306531051	0.00864110081443132
Merged-chr7-99483745-4	chr7	99483242	99484242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012052)	promoter-TSS (NM_012052)	-33.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	7.36257857770699	7.84166525436414	7.10770941552217	7.35722682573054	7.42232360137423	7.16560734514907	-0.236988479415377	0.406363985425486	0.780657027509493
Merged-chr2-164455049-4	chr2	164454544	164455544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5927.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	5.27944195343366	5.274571241638	5.01928694420868	4.92202787288788	5.02198575576117	5.15324395344195	-0.367058673069599	0.318912632899892	0.712969374077442
Merged-chr1-74241048-1	chr1	74240548	74241548	+	1000.0	f0_balb.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	4531.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	5.84074556244852	5.86925725243273	5.72626049006091	6.08428491961182	6.17672778961781	6.18853756611025	0.574418639482221	0.0490120436680815	0.281274165772379
Merged-chr8-41364122-4	chr8	41363633	41364633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	10564.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	5.02132603241457	4.9977110172049	4.98583890130965	5.47529640267812	5.39628787629239	5.22736344575083	0.763561922761495	0.0310593093001665	0.213338534608573
Merged-chr19-40589445-4	chr19	40588932	40589932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-969.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	5.58439048308777	5.53882723523861	5.53546633687417	5.76030541738901	5.97201918332237	5.86371121856097	0.580780004925239	0.0618634386348226	0.322891293559548
Merged-chr1-172095587-3	chr1	172095072	172096072	+	729.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009938, intron 6 of 32)	intron (NM_009938, intron 6 of 32)	-12823.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	4.05060276998186	4.21663198472331	4.18750411348092	4.07959086763401	4.67837724695909	4.2564513895375	0.597172359106151	0.230899845236563	0.626617341979841
Merged-chr17-55879036-4	chr17	55878556	55879556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144546)	promoter-TSS (NM_144546)	-103.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	6.60181341056768	6.77054588956218	6.9499335699919	6.64930854688716	6.67806980364866	6.73688785784668	-0.137628857253082	0.598145838081931	0.880655214435438
Merged-chr14-14345713-4	chr14	14345202	14346202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-793.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	7.19296248359696	6.89156647315873	6.56726626449859	7.40594047678671	7.24226513937418	6.8664392847136	0.419825893571831	0.160034545962796	0.532624875023892
Merged-chr17-56132832-4	chr17	56132269	56133269	+	915.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013662, exon 2 of 17)	exon (NM_013662, exon 2 of 17)	1083.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	5.14301804576111	5.25522401473009	5.24065943142938	5.10076219709945	5.39793272189756	5.45308895728424	0.226169753427751	0.525174240255088	0.848874487604023
Merged-chr3-146107629-4	chr3	146107126	146108126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 1 of 22)	intron (NM_172864, intron 1 of 22)	410.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	3.86366799729888	4.060437189016	3.82247241694253	3.45481504449976	3.90637079077369	3.68031760015264	-0.703252275309214	0.218709117933564	0.612862810164207
Merged-chr15-100495293-4	chr15	100494797	100495797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-58.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	5.86209663094407	5.86487238621454	5.60123298625805	6.20060096509515	5.99808537370433	5.88309410401758	0.431670719819622	0.165566830183852	0.540690607417246
Merged-chr13-92241590-4	chr13	92241097	92242097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010829, intron 19 of 23)	intron (NM_010829, intron 19 of 23)	-113186.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.5311949414157	3.55140189911102	3.16707324337278	3.2463870716711	3.24642322203889	3.58114862744416	-0.275462859040371	0.6688827621645	0.909385924601941
Merged-chr12-16874486-6	chr12	16873984	16874984	+	814.8388669999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-20494.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.83664153001756	6.26412823299423	6.0068580073463	5.11284375329778	5.12262834099538	5.66371446931601	-1.3729759661778	0.000151042787470778	0.00399871723190217
Merged-chr1-40087671-4	chr1	40087181	40088181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	MER5A|DNA|hAT-Charlie	1588.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	5.30743211378819	5.10579641469508	4.98446280609457	5.11380925254077	5.02328175391807	5.15514190615061	-0.112185498246147	0.760290936373457	0.940712904146702
Merged-chr14-8213197-2	chr14	8212697	8213697	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	-884.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	3.53343118448928	3.57812347406697	3.63933653694846	3.31800861228623	3.27285393772871	3.20809082135104	-1.21491432425671	0.0442188604248108	0.264702369656666
Merged-chr6-145249550-4	chr6	145249059	145250059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045598)	promoter-TSS (NR_045598)	672.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	7.93570962182611	7.76324187284852	7.65317309729571	8.05304891605645	7.53974786323122	7.76370528501404	0.0128847550036331	0.959139571780471	0.990174309444982
Merged-chr13-42052844-4	chr13	42052338	42053338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	817.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	8.37885850082864	8.05003725666145	7.7791127498851	8.29323470274931	8.23791709463426	7.96972132048668	0.10975808964786	0.667383355358588	0.908729013673458
Merged-chr19-12814431-2	chr19	12813931	12814931	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	15852.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	4.42148698045932	4.27260204563987	4.83396256768023	4.28402357160888	4.15021329357697	4.50025920481148	-0.537615614355354	0.262093312305374	0.659956433055093
Merged-chr2-31165159-4	chr2	31164666	31165666	+	711.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 1 of 17)	L1MEd|LINE|L1	12850.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	4.57723882568447	4.08115017063317	4.07599683750329	4.45796514382619	3.96618436569389	4.19601991953331	-0.141605091862551	0.786228831372775	0.948394331310521
Merged-chr8-45415173-4	chr8	45414717	45415717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4598.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	5.49066054211595	5.43317876554397	5.39913555594729	5.28084730456107	5.40475363782082	5.65624925593645	0.00754502115214952	0.982302537755181	0.995992226862322
Merged-chr2-153170631-4	chr2	153170128	153171128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	9327.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.74893122924807	6.71699628850085	6.64313760207256	6.992910260937	6.83141839934672	6.66856593516263	0.212268642401334	0.409387433147584	0.782737623652496
Merged-chr12-85824741-4	chr12	85824280	85825280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081423)	promoter-TSS (NM_001081423)	113.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	7.18737690894867	7.44806207713558	7.27949306731302	7.3113954429187	7.31737752667297	7.11742784387527	-0.081129476291594	0.736141398180063	0.933046642264646
Merged-chr2-73056308-4	chr2	73055790	73056790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75844.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	7.81243523384709	7.99890321214106	7.66635800482759	8.03069406530863	8.21251916788231	7.71281251789825	0.246193953666231	0.32262941685717	0.715997472916187
Merged-chr9-22130663-4	chr9	22130179	22131179	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	-81.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	6.94852098950334	6.81277619403544	7.19835926793909	7.12891492209347	6.77742648495657	7.03696342251383	-0.00590583571918381	0.982396055894016	0.995997217680293
Merged-chr13-73970701-4	chr13	73970217	73971217	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	6866.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	2.35735833136037	2.21851584323236	2.46590241936763	2.24503638817873	2.21420079424951	2.41479648602806	-0.381734003763638	0.654109638886564	1
Merged-chr11-118154049-2	chr11	118153549	118154549	+	845.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24830.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	5.46951011463878	5.81631275279178	5.58872753876618	4.39969363609843	4.17246903796393	5.02739457045516	-2.32445149478814	4.35111114520476e-07	2.60278401272608e-05
Merged-chr10-57438207-1	chr10	57437707	57438707	+	1000.0	f1_balb.idr	Intergenic	L1VL4|LINE|L1	48146.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	3.01743133766654	3.13998010180022	3.18717173724091	2.98957350878683	3.0713758524435	3.25803205441627	-0.0354419834967155	0.956893675132707	0.989887454023164
Merged-chr17-80062324-4	chr17	80061818	80062818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-50.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	7.46376934079365	7.73085254499658	7.35009585416043	7.13052405118563	7.20228755999882	7.2468382003102	-0.501431102729147	0.039079098055907	0.245151808733105
Merged-chr5-123145962-2	chr5	123145462	123146462	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3769.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	3.90090754123701	3.80337140874503	3.88917202592179	3.84389106997002	3.67212607181908	4.22692191490086	0.184234409352811	0.734110188282326	0.932325051544019
Merged-chr2-34801220-2	chr2	34800720	34801720	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1308.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	4.33520105369707	4.70188711395681	4.57050813038392	4.47019392818362	4.68573411656523	4.59621806793083	0.108457739066384	0.803112751231588	0.953422605427866
Merged-chr16-37540892-2	chr16	37540392	37541392	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042499, intron 1 of 7)	MT2C_Mm|LTR|ERVL	998.0	NM_001042499	67657.0	Mm.28158	NM_026297	ENSMUSG00000022827	Rabl3	4930553C05Rik|AA958834	RAB, member RAS oncogene family-like 3	protein-coding	4.63913570259641	4.30625109368351	4.31109147328874	4.59981936749409	4.71236149769633	4.42700633480499	0.391331179204628	0.382046216502941	0.763758051205099
Merged-chr10-99182346-4	chr10	99181850	99182850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	74215.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	8.30849318441288	8.29297165106524	7.71499329314639	8.19503146768082	8.51860000225311	8.02676915465834	0.179072319761296	0.510167812081116	0.840732911368308
Merged-chr9-118658852-4	chr9	118658339	118659339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	52130.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.399543088227	7.40130283596653	7.38571207992886	7.13807820076947	7.44423421782155	7.05816700705822	-0.23750412213035	0.33480518384889	0.725198429760335
Merged-chr15-73617783-4	chr15	73617263	73618263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357747)	promoter-TSS (NM_001357747)	-439.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	7.35330573368698	7.47956960899542	7.05187455776491	7.29545640302338	7.67950209466698	7.13693177401038	0.128985145043456	0.640491057573477	0.898483031109382
Merged-chr4-120934069-3	chr4	120933587	120934587	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 5 of 5)	intron (NM_001005788, intron 5 of 5)	-9082.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	4.43596966528528	4.23279386051084	4.62134294034171	3.99381184414373	3.60626689636632	4.16086840528104	-1.44121143753325	0.00682455783438386	0.0767375416599206
Merged-chr18-53247902-2	chr18	53247402	53248402	+	860.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	PB1D7|SINE|Alu	2240.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	7.44516844845954	7.27355912464181	7.34154129455158	7.44994327075541	7.75087305765283	7.28360768167669	0.24144210223974	0.335083030355838	0.725339338581532
Merged-chr3-97775026-4	chr3	97774517	97775517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7003.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	6.54522358969797	6.33877086751628	6.21985414472723	6.57433579419917	6.73020344529437	6.4423282501552	0.34392824829393	0.218583862659425	0.61273880821229
Merged-chr9-110101037-4	chr9	110100533	110101533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252683)	promoter-TSS (NM_001252683)	54.0	NM_001252683	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	4.29329682150996	4.43562057717569	4.22586057443343	4.22933478518535	4.4859344846269	4.55202604634158	0.263778449030084	0.561632512252904	0.865493436050369
Merged-chr1-184542504-4	chr1	184541995	184542995	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	15196.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.38008434475246	4.32539280772714	4.38323897151263	3.94905015583602	4.26373141172101	3.98129330928964	-0.760841408363089	0.117088355460677	0.456952670192395
Merged-chr4-19580812-3	chr4	19580280	19581280	+	860.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 2 of 9)	B4A|SINE|B4	5714.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	2.94254763171227	3.19073259919807	2.89882152888432	3.15371269111393	3.02840235663325	3.09524416941533	0.309593433479048	0.650056005904341	0.902475350617976
Merged-chr13-60675424-2	chr13	60674928	60675928	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	73217.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.40781188606212	6.74884871431145	6.57190240760473	6.44458020221237	6.6793316493279	6.18102336051365	-0.193318970486649	0.513670941391057	0.842716032340123
Merged-chr1-34824601-2	chr1	34824101	34825101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	18449.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	4.4873200149676	4.45575088859512	4.72519573850353	4.43930436645012	4.3973823712912	4.85966807940502	0.0391750920950976	0.93016753686063	0.984448052988905
Merged-chr4-107178519-4	chr4	107178057	107179057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	-73.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	7.85543868118011	8.14145796520832	8.06353197834805	8.18614021807465	8.09442084250584	7.97280704861574	0.0911755940474386	0.680933185464318	0.914522966124234
Merged-chr2-4447489-3	chr2	4446979	4447979	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	46503.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.48567385785518	4.05459295278984	4.35080361312047	4.80897749031079	4.4445493342987	4.37404975414992	0.633999595749649	0.182658061130863	0.565445587654929
Merged-chr18-90579701-4	chr18	90579202	90580202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-123.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	5.76906358730719	5.60528379746088	5.26938318909432	5.84833071737825	5.94699514412721	5.37031384796914	0.334801900964813	0.361741710537729	0.747458707295016
Merged-chr13-64307546-4	chr13	64306981	64307981	+	916.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	MTE-int|LTR|ERVL-MaLR	5229.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	5.2583243130659	5.48473744464961	5.29763378835867	5.03947081022753	4.88649853151396	4.91625857504476	-0.856561382868127	0.018586006509045	0.154029912709233
Merged-chr5-27195190-4	chr5	27194698	27195698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-66737.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	4.23460092464107	4.37927152357394	4.57216229142645	4.95621633697329	4.55323819291849	4.67884109123312	0.842159672116055	0.0568008639078711	0.307240868754218
Merged-chr18-3891059-4	chr18	3890554	3891554	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-274778.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.63629400524733	3.81380695601592	4.04423804226191	3.81816044230385	3.924989629226	4.19805105436418	0.460160680673806	0.391222010078933	0.770225274811847
Merged-chr7-80067401-3	chr7	80066896	80067896	+	786.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	MER2|DNA|TcMar-Tigger	7861.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.84660601645547	4.89616803621161	5.13557373559542	4.67350744306742	4.68585180171647	4.62517793584684	-0.665132636963653	0.0953893476757476	0.411699613123274
Merged-chr17-13549054-2	chr17	13548554	13549554	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045437, intron 1 of 3)	MTC|LTR|ERVL-MaLR	5040.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	2.55179943270893	2.68560802197871	2.8534122789669	2.55746322424507	2.50968290157177	3.0366532767901	0.0991974927186756	0.902036958786785	0.977392189525306
Merged-chr13-100453332-3	chr13	100452821	100453821	+	969.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-457.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	5.50129195418869	5.59375499659612	5.93476374500266	6.71044386742714	7.02129874437615	6.86276567314392	2.00590227000857	1.30843046944751e-11	2.0658801233736e-09
Merged-chr7-19465994-4	chr7	19465515	19466515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7521.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	7.7152942728155	7.77328407322839	7.40476218158469	7.77824183125956	8.15961974604647	7.6092286746131	0.333065734842951	0.205414026884333	0.596047563330878
Merged-chr11-51224192-3	chr11	51223696	51224696	+	963.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3778.0	NR_110444	71297.0	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	3.42538149725642	3.60357282873989	3.77514247307335	3.84038974430939	3.8134893698287	3.94080941722004	0.872538255275209	0.111858837260118	0.446748110335984
Merged-chr10-117452335-4	chr10	117451844	117452844	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	4.79423744141826	4.38525153598921	4.37992105147916	5.04385231305214	4.74079242376718	4.75415857676873	0.724721930587493	0.100017993427781	0.421843317698826
Merged-chr13-107764790-2	chr13	107764290	107765290	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	77393.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.62625314698124	3.48116171052849	3.82649497606571	3.6166420107586	3.57495707810453	3.89458771731651	0.171591000696143	0.762069846963722	0.941406354590576
Merged-chr13-8644158-4	chr13	8643656	8644656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	ORR1E|LTR|ERVL-MaLR	226888.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	6.69562820302338	6.90949780267052	6.63412795021952	6.46115234341565	6.51848455229965	6.25887762596116	-0.527235891371451	0.0526695179833049	0.293715250476163
Merged-chr11-71008496-4	chr11	71007983	71008983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291147, exon 7 of 7)	3' UTR (NM_001291147, exon 7 of 7)	-4051.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	6.09024131495118	6.19804805694967	6.23371503496779	6.10052295415409	6.33161563271356	6.3515223112582	0.156853564662119	0.579657292993502	0.872572319921262
Merged-chr5-38558997-2	chr5	38558497	38559497	+	607.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	(TG)n|Simple_repeat|Simple_repeat	2598.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	3.3385706350772	3.62783296695051	3.55782176567705	3.88469965572307	3.60973183476176	3.9322154799888	1.01229832799662	0.0794722097984324	0.372757814707326
Merged-chr16-18396681-6	chr16	18396193	18397193	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272031, intron 1 of 16)	intron (NM_001272031, intron 1 of 16)	4130.0	NM_001272032	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	4.25239134049947	4.33664928066214	4.22473749765296	3.91921818979102	4.19381810818531	4.46143146022458	-0.193359999699596	0.69200850429592	0.918541547639936
Merged-chr15-30607587-2	chr15	30607087	30608087	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-431539.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.11008514685033	4.28726186648638	4.18981728474716	4.10781364773115	4.12985718230589	4.25745076463681	-0.103622205674504	0.824661156260609	0.958596193929081
Merged-chr11-34026905-4	chr11	34026403	34027403	+	895.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MTB|LTR|ERVL-MaLR	-20025.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.43727680072312	5.21667229037387	5.82896569865382	5.42159817154114	5.12147833958136	5.60168523706535	-0.234958775634841	0.540424665660223	0.85632302227606
Merged-chr19-56742170-4	chr19	56741616	56742616	+	906.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19744.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.4697626952981	5.62228425828293	5.49358148229764	5.73821172970025	5.96843041848952	5.46508381146656	0.410879913603757	0.224430204381999	0.619197866183143
Merged-chr9-63123907-2	chr9	63123407	63124407	+	776.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23073.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	6.45932133972764	6.54141069587726	6.4351471121944	5.96557669332432	6.45323507853933	6.1774551230079	-0.419712121110115	0.155985058252524	0.526146498074787
Merged-chr13-94380829-2	chr13	94380329	94381329	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	B1F2|SINE|Alu	21869.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	3.68788500086096	3.93292554871206	4.46891450530435	3.89625064235901	3.94134058640993	4.19197052186955	-0.156051570189514	0.784205134603743	0.94750955958744
Merged-chr4-137388553-4	chr4	137388045	137389045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21246.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	8.26428732165893	8.37065580388526	8.62037799884088	8.26728992336489	8.68742922886192	8.26929302348858	0.0083648276013151	0.972464995914233	0.993868590220018
Merged-chr13-14022028-3	chr13	14021533	14022533	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 3 of 16)	MMVL30-int|LTR|ERV1	17605.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	2.96199048060817	3.234200766258	3.46477921575247	2.90490741103297	3.01049819552133	3.22206159851669	-0.787891883541112	0.259023787185673	0.656586751129823
Merged-chr10-8505807-4	chr10	8505308	8506308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13017.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.19317946867829	5.13376322179588	5.66380922195186	5.55214947191065	5.5756704963422	5.74969853829885	0.552432773963917	0.123487203242999	0.470285147381159
Merged-chr14-54781912-4	chr14	54781426	54782426	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016972)	promoter-TSS (NM_016972)	-40.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.63888207606737	5.61864431932472	5.70133577867348	5.98040800058972	6.24521496232191	6.40561497991656	0.994396807487475	0.00125244022638293	0.0214695192329771
Merged-chr11-107471532-3	chr11	107471083	107472083	+	662.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-863.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.55186692870829	5.70309558357975	5.67412661984338	6.09097295268628	6.11026918921162	5.76403242680809	0.651158947180031	0.0375898745572628	0.239676496717297
Merged-chr2-26975163-2	chr2	26974663	26975663	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	1747.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	4.67768159228973	4.42710840037361	4.26781767741771	4.75007690854583	4.53699936580104	4.38622486926111	0.228721303372576	0.613855116578253	0.887317203673931
Merged-chr4-59548677-4	chr4	59548206	59549206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	CpG	658.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	8.04439738147094	8.3491566315581	8.17592998242378	8.09899818496807	8.09513714034823	8.31886505951928	-0.0364566341065791	0.869992695044801	0.969963985546251
Merged-chr19-43689684-4	chr19	43689186	43690186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053103)	promoter-TSS (NM_053103)	-3.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	5.73856925636414	5.5445638081822	5.27958355785688	5.72031237411312	5.5682903209448	5.27562630601517	-0.00468550305759136	0.989549901512554	0.997611022725407
Merged-chr4-35225205-4	chr4	35224698	35225698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	682.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	8.72686205421619	8.7739983391541	8.28497452341756	8.62038709375221	8.86053360533352	8.49705978573566	0.0730784897210652	0.763025128978376	0.941682496514445
Merged-chr8-61451071-4	chr8	61450587	61451587	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36647.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	6.07772728363117	6.46248145828552	6.2438524413037	6.08513459848115	6.53004528189469	6.32395606930615	0.0966927301851864	0.75204484162944	0.938053911816822
Merged-chr8-115597325-4	chr8	115596818	115597818	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109576.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.38616788421469	5.32063302187075	5.5966095782027	5.06868217575075	5.04770016112896	5.38622150027016	-0.535790410104567	0.136802126761898	0.494119519191041
Merged-chr1-171390312-4	chr1	171389772	171390772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	1312.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	7.78389293541629	7.74165682000588	7.7571723391466	7.82132349758697	8.01030082701401	7.8798248682052	0.212464718692058	0.323043017104668	0.716449793892136
Merged-chr17-25868555-8	chr17	25868018	25869018	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026633, exon 2 of 5)	exon (NM_026633, exon 2 of 5)	220.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	6.63636407569193	6.69715223453932	6.43948230926311	6.56101905284665	6.51938842787706	6.27924721882159	-0.217995694906222	0.424874511945392	0.792848465017231
Merged-chr4-125055472-4	chr4	125054953	125055953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145552)	TTS (NM_145552)	10204.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	7.5726762100535	7.54824138383408	7.35427775207511	7.32708202009696	7.23151723757638	7.1632097931056	-0.379931180670004	0.102418353208427	0.426826922456515
Merged-chr2-130642885-4	chr2	130642386	130643386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197945)	promoter-TSS (NM_197945)	-42.0	NM_001291027	241638.0	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	5.25882489075713	4.86122359592424	4.86743709762674	4.83073730059615	4.64891822719768	4.65174752708526	-0.676313105979419	0.0979081218960767	0.417267926999014
Merged-chr17-27969753-3	chr17	27969244	27970244	+	717.666687	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	60438.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.54652711202037	4.25551006029125	4.05761344068413	4.10544267982649	3.82093360958633	3.97374396200385	-0.973536367512192	0.0557791502711873	0.304006781670593
Merged-chr9-4376377-4	chr9	4375876	4376876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-176.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	6.33123532800895	6.41428683255931	6.53350374690725	6.38883501340507	6.65110128905498	6.39426242809988	0.112357777633969	0.682992546667093	0.91523316791368
Merged-chr12-100007975-2	chr12	100007475	100008475	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	43476.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.69213111626608	4.44285674544526	4.61317271626966	4.5223726413491	4.3675313950686	4.38334879860681	-0.398600837284901	0.356188048819437	0.74311599343499
Merged-chr12-21286841-3	chr12	21286327	21287327	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008403)	promoter-TSS (NM_008403)	530.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	7.42968851402583	7.90184323601453	7.78560906162918	7.81221964590092	8.26894749217514	8.01362111454784	0.468228706514668	0.0708106729788882	0.34888764076429
Merged-chr3-146500666-4	chr3	146500185	146501185	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	849.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	7.75554353580332	8.12147606889401	7.64743801671514	7.70270446894108	8.23308164448654	8.00468264645434	0.19718000101916	0.45805351073517	0.812791853920592
Merged-chr9-63989448-4	chr9	63988967	63989967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	32592.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	6.38325844736921	5.97501013162554	6.09254456179508	6.1013920597556	5.99332089283743	5.9693925047856	-0.242590797690056	0.42326816968959	0.791868419997774
Merged-chr7-66079620-4	chr7	66079120	66080120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024439)	promoter-TSS (NM_024439)	-29.0	NM_001348246	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	7.64954023141197	7.86133581984525	7.67471918685746	7.73362865351505	7.66586198298855	7.68604847481592	-0.0576028025245533	0.79424613858646	0.950647608775626
Merged-chr17-65614706-2	chr17	65614206	65615206	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1151.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	5.85267785277935	6.39846952375232	6.26320861261786	6.04374740465365	6.12296364410048	6.22408354911754	-0.105937569847636	0.735086873437054	0.932617455907478
Merged-chr5-36797513-2	chr5	36797066	36798066	+	566.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-812.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	3.53165206844145	3.87664324473195	3.82927086717417	3.84416742046705	3.72495496955371	3.63718469221518	-0.0436988129199603	0.937016166829378	0.986037792257163
Merged-chr10-127590480-5	chr10	127590012	127591012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 12 of 88)	intron (NM_008512, intron 12 of 88)	30636.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.76573974860296	7.33017530228088	7.1384230475662	7.4251103899345	7.4491585807189	7.44228241825417	-0.0139388601327897	0.958266559001864	0.990000537228272
Merged-chr2-148529048-2	chr2	148528548	148529548	+	635.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85513.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.85676305744249	3.65027766525361	3.55799597892545	3.56911937821701	3.56786565833717	3.73593394327842	-0.267847857788664	0.631659675319538	0.89524721007624
Merged-chr10-81182086-2	chr10	81181599	81182599	+	813.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-908.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	5.29915035559209	5.14555932965264	5.5394214564108	5.27686914558785	5.5232471510019	5.84532488317228	0.449426803620604	0.222482631782521	0.617451713343938
Merged-chr18-37934973-4	chr18	37934456	37935456	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	CpG	520.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	6.83514915024309	7.22107615345767	6.9091954388066	7.05738869847464	7.22954360442137	6.86352692981945	0.0950882085025255	0.72372617017272	0.929128417950564
Merged-chr9-65598950-4	chr9	65598461	65599461	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11801.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	4.02759036001062	3.99539647853224	4.00363542478026	4.17762126406569	4.06646105832375	4.02361082081043	0.242839666544918	0.614373459329602	0.887435546271868
Merged-chr19-4147328-4	chr19	4146835	4147835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	6.11384318207169	5.7264042801585	6.57175994472932	6.07648567765047	6.32083420936574	6.58387176783308	0.27436303318677	0.439577581466852	0.801216871474848
Merged-chr18-67396718-4	chr18	67396207	67397207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	5976.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	6.68035170888542	6.68025543528068	6.46101441880645	6.11572804221325	6.19601853213166	6.27000990922325	-0.695710306902179	0.0104686011513454	0.103735942230873
Merged-chr10-121614163-2	chr10	121613663	121614663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12169.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	4.19234849494475	4.18741836894823	4.11140373831368	4.0082549371702	3.99269799765461	4.31304389077826	-0.182209629345617	0.705858050769652	0.922834459892351
Merged-chr11-75159800-3	chr11	75159374	75160374	+	731.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001002764, exon 18 of 19)	exon (NM_001002764, exon 18 of 19)	8278.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.17122490686597	2.95606337334531	3.69535190489293	3.18369523133543	2.93435046183615	3.21039939202201	-0.790224734235891	0.271557473552394	0.668948850119831
Merged-chr5-31767370-3	chr5	31766866	31767866	+	993.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	MTD|LTR|ERVL-MaLR	69316.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.0137329941443	6.33012960836748	6.2806545377096	6.32128649685853	6.19815524396643	6.5379749571173	0.227480857994871	0.439261941153718	0.801063133660301
Merged-chr11-119928432-4	chr11	119927914	119928914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	14604.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	5.87543515270435	5.62402439594871	5.58225222080986	5.60591719177195	5.47669859681184	5.61689444049428	-0.266794845952264	0.411725997786855	0.784025679251701
Merged-chr16-38400092-3	chr16	38399605	38400605	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33040.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	2.90115618304659	2.7064517936447	2.75269422569729	2.78955064154943	2.76452503474855	2.88692083954467	0.106061957222966	0.882776388933458	0.973275268253702
Merged-chr13-46734361-2	chr13	46733861	46734861	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6512.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	5.82052142517106	6.19162875852637	6.28327242100173	5.51737044695453	5.73858779219868	5.88510929397397	-0.687964023676456	0.0361686918296501	0.233950999916784
Merged-chr11-31891238-3	chr11	31890750	31891750	+	918.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	L1MD2|LINE|L1	20310.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	5.39458104094536	5.52998227960122	4.94710274152229	4.81793469054632	4.41988517458151	4.44720389580587	-1.64889489523036	0.000134096706483522	0.00363213501076852
Merged-chr8-25062136-4	chr8	25061641	25062641	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 5 of 11)	intron (NM_031257, intron 5 of 11)	-23179.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.65323330486549	5.76612548485356	6.15564565081225	6.00753569781943	6.41497555258066	5.97616537699217	0.510768659641234	0.126203765153031	0.475052622314112
Merged-chr8-82372991-3	chr8	82372512	82373512	+	789.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	29574.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.77193448792824	4.78084878755729	4.95386681686216	5.04133824058298	4.99437054327461	5.08673877572597	0.455286949444942	0.226369542827679	0.621328050925588
Merged-chr10-78135807-2	chr10	78135307	78136307	+	844.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	33961.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	5.82518797902976	5.13906672037641	5.15431679836814	5.38722722346778	5.54674619991849	5.89429612013752	0.369161484858198	0.362695594653095	0.748194541845863
Merged-chr19-6978477-3	chr19	6977981	6978981	+	840.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008020, intron 3 of 5)	intron (NM_008020, intron 3 of 5)	911.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	2.9643005248379	2.85467614963237	3.06272876323052	2.86780869543601	2.85598747403693	3.13395987613892	-0.0333145592619909	0.961715574159583	0.990669330070468
Merged-chr11-114229454-2	chr11	114228954	114229954	+	984.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	31196.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	5.93068569836986	5.68886889098759	5.28696024570349	6.42758267970692	6.58826983969728	5.88875419931312	1.149029291441	0.00190855176689424	0.0298145652206548
Merged-chr7-78783018-4	chr7	78782504	78783504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026498)	promoter-TSS (NM_026498)	85.0	NM_023331	67308.0	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	6.21524882397851	6.56127597701168	6.08562634520841	6.69979436616143	6.72089650357348	5.97185433496484	0.338598500319331	0.323504412673571	0.716728044565393
Merged-chr15-50697919-4	chr15	50697408	50698408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191141.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.54670769288836	6.24114042347162	5.72953428150427	6.00076477156502	6.00744636885895	5.76456222819349	-0.500445720471423	0.14878231794981	0.514713084648587
Merged-chr5-64297271-4	chr5	64296764	64297764	+	946.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	L1MB2|LINE|L1	66907.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.98503278027586	5.65703232806288	5.43423162607089	5.94509114863742	5.91728515736463	5.59251745671306	0.201450167675063	0.559955829399024	0.865168019835518
Merged-chr7-43671895-4	chr7	43671388	43672388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-143.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	7.62595090703343	7.40537520021819	7.70841268130417	7.97220588239335	7.92565343474067	7.60842732684304	0.388461624125469	0.106312352270548	0.435306279684142
Merged-chr15-99420809-2	chr15	99420309	99421309	+	692.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27590.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	5.66076172344937	5.94694784466669	5.34656431968977	5.34892678400833	5.83118974277631	5.3783331284783	-0.246240655001892	0.515137626233836	0.84337265078831
Merged-chr9-107611319-1	chr9	107610819	107611819	+	779.0	f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	6.10840142605494	6.00261154200855	6.55746362614302	5.38594483958513	5.62295701620551	5.83980208335595	-1.07867108490581	0.00169145507220585	0.0271343188105393
Merged-chr1-127084102-4	chr1	127083536	127084536	+	932.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120950.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.86267806274156	5.06451984678032	5.12707506791041	4.86383642731185	5.09477958526329	5.0230031084688	-0.0365026865554249	0.923323723057221	0.982699256056545
Merged-chr9-63132280-3	chr9	63131787	63132787	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14693.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	6.75361110757347	7.16688608179347	6.65717562239666	6.59369406033699	6.32670044615599	6.3269647520917	-0.734825585354034	0.0118373003421123	0.113070610362356
Merged-chr15-101298170-4	chr15	101297665	101298665	+	939.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033803)	TTS (NR_033803)	4953.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	4.29746393572711	4.17192698243925	4.14032697272515	4.09357943148568	3.73908896463559	4.2085509460369	-0.544760736268599	0.283480637238812	0.681376161050487
Merged-chr7-80198436-4	chr7	80197946	80198946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	5.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	7.00801772305113	7.01814879227587	7.08015653087167	6.92814359846684	7.01612853229445	6.83333604766957	-0.151837667161775	0.529864862164768	0.851056759984673
Merged-chr14-51063501-4	chr14	51062988	51063988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6246.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	6.98662632251701	7.28099866304905	7.11052010456029	7.0114589244571	7.23196256998221	6.96811926843091	-0.0761994926787278	0.763293825099015	0.941757897373055
Merged-chr17-63493320-4	chr17	63492819	63493819	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7261.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	4.74204545495897	4.69652812389309	4.99446603092657	4.43734179414207	4.80367319189634	4.99232440784864	-0.113776858561771	0.790731949544699	0.949584063682145
Merged-chr7-80123852-3	chr7	80123339	80124339	+	799.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8489.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	2.99719587173522	3.18441641325034	2.88759854536651	3.10698776000278	2.92113997978062	3.14416723799833	0.100814579374563	0.883533360710841	0.97338816689636
Merged-chr1-180958506-1	chr1	180958006	180959006	+	541.0	f1_balb.idr	intron (NM_144794, intron 9 of 22)	intron (NM_144794, intron 9 of 22)	15988.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	3.65949671006448	3.11685802747324	3.89207073699077	3.33983971355668	3.38713213671709	3.35957266227602	-0.834526827645282	0.211645918174043	0.603993331255815
Merged-chr19-24336601-3	chr19	24336091	24337091	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 13 of 14)	intron (NM_008846, intron 13 of 14)	-56005.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.28164404575799	3.24802189473882	3.2198121970347	3.32628224620078	2.90914110480279	3.34812609466875	-0.190000087421248	0.776629611402962	0.944890351789015
Merged-chr9-105483069-2	chr9	105482588	105483588	+	722.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	B3|SINE|B2	12045.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	4.67625256340358	4.83955918225778	4.61832407267217	5.00457612452644	5.30732768275554	5.51952427199744	1.21280664163395	0.00248279361524976	0.0365391875598024
Merged-chr8-123005245-3	chr8	123004749	123005749	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	37035.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.26884713456912	4.14356818863637	4.31202136961747	4.64469513317876	4.10554763553169	4.28993558813809	0.331282577206174	0.492420028311938	0.83104217378051
Merged-chr11-83663200-1	chr11	83662700	83663700	+	564.0	f0_balb.idr	intron (NM_013652, intron 1 of 2)	B2_Mm2|SINE|B2	616.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	8.63942803298258	8.77794112767535	8.2080730905693	8.2148640697369	8.44201313392656	8.08698488101069	-0.429864611632408	0.0859437591401693	0.388215443244267
Merged-chr17-33629089-1	chr17	33628589	33629589	+	1000.0	f0_c57.idr	promoter-TSS (NM_026712)	promoter-TSS (NM_026712)	-3.0	NR_034153	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	6.23318229735575	6.39909307779352	6.51815818331743	6.39383863687015	6.26508007026922	6.43753743205168	-0.0335375727265481	0.903505951127227	0.977832715016903
Merged-chr8-124230074-4	chr8	124229596	124230596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1298.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.64253502943797	5.27322792972774	5.83603163373979	6.52152435039575	6.35900254561026	6.66107387060075	1.59109010409411	8.6020058992583e-07	4.75364031833962e-05
Merged-chr7-83810428-2	chr7	83809928	83810928	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15589.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	3.57482795281073	3.60124677644126	3.56204898408867	3.50822364452516	3.2329242736222	3.63226172266048	-0.443480662415865	0.455021261823828	0.810667376538136
Merged-chr12-34663250-2	chr12	34662747	34663747	+	635.0	f0_balb.idr|f1_balb.idr	intron (NM_001271386, intron 3 of 27)	L1_Mus4|LINE|L1	-134358.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.90666308049688	3.87925166877689	3.58344996476575	3.87560620323315	3.99675515382815	4.37566312031689	0.864923778504911	0.118444899108203	0.459921210483695
Merged-chr12-111675290-4	chr12	111674769	111675769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2836.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	6.52447713380039	6.40452278912827	6.58286071108854	6.889359159768	7.23424392745358	6.57163475611015	0.686891802251369	0.0185873275828455	0.154029912709233
Merged-chr16-8830643-3	chr16	8830144	8831144	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081400, exon 1 of 4)	exon (NM_001081400, exon 1 of 4)	544.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	8.93602971134369	9.36415991181804	9.10515155743406	8.85230732885216	8.92233978178369	9.33217846899619	-0.133438179083132	0.582456578223468	0.873748969583004
Merged-chr14-73121367-2	chr14	73120867	73121867	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-21143.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.16460137035297	4.3120570401204	4.52525258786067	4.34626244824857	4.25663232453209	4.2535343270865	-0.125225379310563	0.785231797588635	0.947850129107983
Merged-chr12-112941976-4	chr12	112941429	112942429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316724, intron 1 of 4)	CpG	213.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	6.89052670244528	7.16864357713572	6.9727116544438	6.95361924179904	6.85169209570251	6.74956177275515	-0.247681458083865	0.32845174392618	0.720626901875831
Merged-chr12-81750861-2	chr12	81750361	81751361	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	30309.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	5.86141027879988	5.52528674445571	5.5466069883542	5.89163390689498	5.89301618620627	5.66752713739557	0.30580344446671	0.348026255473812	0.735982909356061
Merged-chr5-25099731-3	chr5	25099202	25100202	+	870.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	CpG	940.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	4.04977174151687	4.07765193620018	4.0443351540315	3.65964565170331	3.52534105466542	3.71388149232424	-1.41137525042226	0.00776864587051024	0.0843221348282567
Merged-chr10-78425707-4	chr10	78425212	78426212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007793)	promoter-TSS (NM_007793)	42.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	7.88505330846677	8.42930214320858	7.72432803131577	7.9460182109994	8.20725205561554	7.66706435775584	-0.13020308688266	0.652226540405484	0.902896807825606
Merged-chr11-69666748-2	chr11	69666248	69667248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-578.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	7.13335921467492	7.40369702774002	7.13591489512525	7.31836369138267	7.72240020136715	7.57716978863246	0.468689165271428	0.0643542570962859	0.330624167971583
Merged-chr15-101978133-2	chr15	101977633	101978633	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23846.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	7.54164796494661	7.74777643621062	7.85827990024704	7.67188194410411	8.12534597395067	7.80929093746556	0.244338154634126	0.325064213261128	0.717958419682432
Merged-chr8-121652993-4	chr8	121652504	121653504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-14599	-1071.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	5.36913425460204	5.13308979401976	5.81257157021708	5.54520096111424	4.85469569302724	5.19949829825451	-0.455158234402097	0.28185800956833	0.679908771156903
Merged-chr2-5012816-4	chr2	5012309	5013309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305259)	promoter-TSS (NM_001305259)	-18.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	5.16567902842182	5.13277259797175	5.35973016363946	5.50650687844714	5.29517531693684	5.42271247030548	0.383964108549024	0.268835129837538	0.666007887447011
Merged-chr8-70842095-2	chr8	70841603	70842603	+	767.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032397)	TTS (NM_032397)	-2383.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	2.19036878698484	2.19115062056811	2.10147416809663	2.24554230445144	2.12214113892841	2.37312264193975	0.587203360276296	0.50654187081658	1
Merged-chr11-84880320-4	chr11	84879815	84880815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	-30.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	7.09764487469873	7.03116000417164	7.28062136155517	7.06426522296632	6.94634027667388	6.95479138623178	-0.219818214382818	0.366619251239908	0.751704072179051
Merged-chr16-91647784-4	chr16	91647292	91648292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-32.0	NM_019973	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	8.81112408920282	9.03305539726801	8.49455487140135	8.66475940183343	8.90697553236169	8.81328392134622	-0.00609404852067222	0.979215135735239	0.995177657748265
Merged-chr19-4162642-2	chr19	4162142	4163142	+	631.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_021485, exon 3 of 15)	exon (NM_021485, exon 3 of 15)	741.0	NR_153661	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	5.31170470175144	4.97844368800389	5.12441987119473	5.43612045882479	5.18793059802867	5.00933235066574	0.167186519612465	0.658402335093584	0.905014667687917
Merged-chr7-19629497-4	chr7	19628948	19629948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-10.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	8.93403098112087	8.85754607269683	8.64955122164152	8.64007137790719	8.63982684892497	8.46734536916728	-0.325261158658615	0.120312646150524	0.463771641846234
Merged-chr6-113379495-4	chr6	113379012	113380012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170485, intron 1 of 3)	intron (NM_001170485, intron 1 of 3)	1399.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	5.36067646738888	5.64563778294902	5.96735711772812	5.8273278548119	6.08664791974768	6.26876311185448	0.708443260268815	0.0399988065003722	0.248913371571533
Merged-chr2-85046624-2	chr2	85046125	85047125	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182990, intron 16 of 16)	intron (NM_182990, intron 16 of 16)	-3835.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	2.76738451494695	2.871154437507	3.36637769903663	2.78281203231747	2.71694758730302	3.43608869695962	-0.0242399449250167	0.976165260663829	0.994584826298455
Merged-chr2-12419486-4	chr2	12418988	12419988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149732)	promoter-TSS (NR_149732)	-28.0	NR_149731	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	5.87813729583911	5.94537594686746	6.25056743210873	6.42322386381298	6.15781943982435	6.08146364871823	0.3573876516272	0.242290982849901	0.639370021259067
Merged-chr8-106893204-3	chr8	106892684	106893684	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	409.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	7.92589290308711	7.5145086422147	7.44572040371502	7.87991540073127	7.35578576820343	7.50276344906289	-0.0761211804126349	0.782678294311336	0.946664404661584
Merged-chr8-121949001-2	chr8	121948501	121949501	+	728.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	5.36599961862834	4.84910362805889	5.05185434415611	5.33108117280221	5.28623233738684	4.76100109186795	0.104622914047292	0.802887659760415	0.953400450869743
Merged-chr7-110004659-3	chr7	110004156	110005156	+	803.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 1 of 2)	MIR|SINE|MIR	1990.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	5.21753645277682	5.1234600785895	5.15658713685419	5.22804844917576	5.36592538259257	5.6783105307989	0.521007199739592	0.14684076267244	0.511240993378934
Merged-chr9-90272738-4	chr9	90272252	90273252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1983.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.92593556288044	6.92700255780485	6.93239772233252	7.43900685720403	7.58134943589321	7.3969897633994	0.825174548762203	0.000393114736405725	0.00866268299439819
Merged-chr18-84679700-3	chr18	84679192	84680192	+	702.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	2367.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	3.73225481923589	3.38428621897935	3.67861141142204	3.60836525301618	3.63408327211209	3.59052112035099	0.0260388346396345	0.963647779243369	0.991121100730027
Merged-chr10-20835412-4	chr10	20834907	20835907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-110329.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.6845997073329	7.79306027367203	7.09614485935542	7.53344346884238	7.86044019826155	7.23425164288371	0.0125966454813726	0.966746491931697	0.992349609766636
Merged-chr2-24355565-4	chr2	24355071	24356071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10200.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	5.23705690960915	5.24824280754254	5.78924101608117	5.58030260062626	5.69196519401562	5.67896147133064	0.410143297298129	0.250549052688824	0.647934038618991
Merged-chr9-40807811-4	chr9	40807330	40808330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6557.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.1721622144487	6.98910241272409	6.92477053116713	7.2793986607097	7.40138132027506	7.066996852318	0.341482287618768	0.173025006267486	0.551738511592893
Merged-chr3-126945055-3	chr3	126944552	126945552	+	993.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001327939, exon 37 of 46)	exon (NM_001327939, exon 37 of 46)	-1666.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.22461041162941	3.21098798289702	3.11066444756388	3.71686186956828	3.76996844112179	3.99645061986404	2.46230682292673	0.000130485065947167	0.00355049096381029
Merged-chr17-32389417-4	chr17	32388907	32389907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033525)	promoter-TSS (NR_033525)	32.0	NR_033525	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	5.80327567544591	5.60622658417181	5.94280764010307	5.94835234391127	5.56149868435118	5.71068472049573	-0.0660755756737729	0.841004112390353	0.962832831784718
Merged-chr7-101553498-4	chr7	101553001	101554001	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2301.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.71079346343898	5.52197981294497	5.93788545675547	5.7470808166632	5.68447259385024	5.9081021144729	0.0959105839011341	0.767701991716521	0.942681727491668
Merged-chr13-119429529-4	chr13	119428994	119429994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 1 of 10)	CpG	592.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	6.65858514603919	6.40236496745772	6.85073872384239	7.02075216806232	6.50497849481215	6.85237319723615	0.256080668803031	0.386426219538523	0.767120406662124
Merged-chr15-101224164-4	chr15	101223680	101224680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	-27.0	NM_019518	56149.0	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding	2.90868529710039	3.21237907101628	2.79899124324957	3.31090687724734	3.04324668798881	3.3610355087084	1.08648824386732	0.139711893569876	0.499456539907264
Merged-chr10-37106436-4	chr10	37105942	37106942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32484.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.46997861453803	2.43644901115355	2.39740429737695	2.62080182262756	2.65580395484816	2.66723103227114	1.26510713117249	0.110353684222859	1
Merged-chr7-100208027-4	chr7	100207500	100208500	+	875.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19607.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	5.0122084229127	5.02318444966396	5.15737970693727	4.80792334532516	4.79742781686573	5.22047077266738	-0.25471189427378	0.513851183452529	0.842808721939604
Merged-chr10-78370498-3	chr10	78370004	78371004	+	734.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18804.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	4.07471502280419	3.95181570826996	4.26705643833545	4.39246573154565	4.04700100605917	4.24647493743279	0.381503053198233	0.43481424163702	0.798660466628143
Merged-chr10-117437392-4	chr10	117436906	117437906	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10029.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.12747353749771	6.45233812433575	6.2643170743905	6.17905415533428	6.72566976966281	5.70511502285651	-0.000976122800936687	0.997893719768879	0.999579683478894
Merged-chr2-94178934-4	chr2	94178435	94179435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21026.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	6.32896755506791	6.71721108228283	6.44446208088159	6.44469947686251	6.56355779591751	6.17875756889367	-0.154155815567158	0.599961980581481	0.881353703616113
Merged-chr12-82189979-4	chr12	82189475	82190475	+	858.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	19959.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.67723416224979	4.78372468594055	4.59562504700384	4.48619060256713	4.32095863662018	4.35897121324827	-0.760796390507777	0.0741527159768916	0.358212858090942
Merged-chr13-43496811-4	chr13	43496329	43497329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15856.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	5.255141662049	5.53130879863247	5.2926664446071	5.95079781863745	6.02098026670002	5.6370779105912	0.958251401389134	0.00454313490982271	0.0572331823734335
Merged-chr19-46042447-2	chr19	46041947	46042947	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2826.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	4.11409909160068	3.87591427250264	3.94708550859226	4.17571522286746	3.76647939708806	4.37403310171073	0.394272290222977	0.460520374036956	0.814520074002194
Merged-chr17-26234679-4	chr17	26234175	26235175	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B2_Mm2|SINE|B2	9567.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.06299195988298	7.1766907331817	7.10692444595596	7.4231370468606	7.63717316814095	7.17754171969123	0.475243785206995	0.0578350170497159	0.310814189670785
Merged-chr11-97997546-4	chr11	97997045	97998045	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1372.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	5.42141233947053	5.46104669429752	5.00753860890801	5.67798037719908	5.65974673397078	5.36277955955404	0.489535547120822	0.177454525383882	0.558416010443312
Merged-chr7-111370753-4	chr7	111370227	111371227	+	949.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248052.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	2.80801387769593	2.98987256485941	3.11176469353257	3.20446704748065	3.0489475761583	2.94422789886372	0.459950776361296	0.505621162836335	0.838177729332582
Merged-chr8-14890102-4	chr8	14889609	14890609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1573.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.51112626828643	8.86293283239636	8.17008045940016	8.47284084424724	8.97823334125338	8.50080074712364	0.172543965157632	0.532722117687035	0.851971173271146
Merged-chr13-111805358-4	chr13	111804854	111805854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	3639.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	8.21058899864908	8.20707679205546	7.90772915184846	8.07513610523968	8.29527230556255	7.89846796771836	-0.0204014305759557	0.931248392413101	0.984851910381307
Merged-chr19-55292585-2	chr19	55292085	55293085	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 17 of 21)	B1_Mus1|SINE|Alu	23451.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	4.88229608273165	4.88329987530251	5.1790928185613	5.27663773138839	5.102230874831	4.93316562966031	0.296784995733466	0.438066817973095	0.800392257304524
Merged-chr10-68264082-4	chr10	68263582	68264582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	14644.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.15955395384187	5.03756362106872	5.35004137543232	5.09909905575109	4.99726893514793	4.87867082523249	-0.379856893188808	0.309361607145021	0.704972356009282
Merged-chr10-22731864-2	chr10	22731364	22732364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-417.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	7.8503524111195	8.16274456577769	8.11467193288457	7.92153669459036	7.73266972802628	7.95847307595028	-0.253857643489275	0.266708171607573	0.664172509867066
Merged-chr3-108017509-4	chr3	108016970	108017970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010358, intron 1 of 7)	intron (NM_010358, intron 1 of 7)	503.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	7.68153644468207	7.6578389556752	6.91523867173813	6.93436849497007	7.16486265637818	6.57838351667024	-0.817887813623564	0.0108121587747913	0.106171995956492
Merged-chr7-64356772-4	chr7	64356277	64357277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	17318.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.6727127040127	6.65698442606336	6.80272210665215	6.9785024501942	7.29187382943993	6.4837357272276	0.410714592872221	0.175821598409919	0.555820962748093
Merged-chr4-43394650-4	chr4	43394142	43395142	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-11860.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	5.41815317705841	5.40544516249303	5.40398159844144	5.65249771024952	5.47330746672812	5.71634716910409	0.381233335524231	0.245269084452828	0.642393755173178
Merged-chr2-94144852-4	chr2	94144358	94145358	+	928.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	13051.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	6.89158586132096	7.21822702937602	6.86813145872549	6.9896621633237	7.05604056420632	6.89696690424989	-0.0352759643742993	0.891174185941772	0.974784368075126
Merged-chr4-117545754-4	chr4	117545265	117546265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4559.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	6.91397203342793	6.85976832826845	6.73304743256868	6.58208233566217	6.82604907877758	6.59212478551467	-0.253374420443059	0.329509719741997	0.721399184090983
Merged-chr1-45880688-2	chr1	45880188	45881188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	44906.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.27544377997594	7.21119072566748	7.24592280616527	7.18415098716921	7.19021273296931	7.17210576716353	-0.0920620078734571	0.687369076596641	0.91713422959374
Merged-chr3-8735043-3	chr3	8734530	8735530	+	571.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67992.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.62432289685852	4.41099029824078	4.57563758742222	4.13351084697584	4.31732834044174	4.25681522633657	-0.771363985441078	0.086613857496895	0.389875727323211
Merged-chr13-97196984-3	chr13	97196451	97197451	+	835.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	1406.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	4.88799689333077	4.88146705184522	4.90745759281114	4.84300097407203	5.02941987368463	4.97240642601993	0.136574161242723	0.717567080271236	0.927113669510706
Merged-chr11-61142465-4	chr11	61141962	61142962	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021349, intron 2 of 3)	intron (NM_021349, intron 2 of 3)	1627.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	4.51396761711708	4.34928935662261	4.75077916303661	3.98603190471736	4.05570159882551	4.0233444209815	-1.40616519550653	0.00348150039850174	0.0470077086250806
Merged-chr1-77826368-4	chr1	77825877	77826877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-311289.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	5.07657887580595	5.04514560114313	5.34546723290827	4.9315330815938	5.12321441959852	5.26098209364657	-0.0949218959297379	0.799594097602893	0.952263864378888
Merged-chr6-113333264-4	chr6	113332775	113333775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133926)	TTS (NM_133926)	6299.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	6.85099438717924	6.71150715191864	6.93457455607926	6.95172220655138	7.31124075000522	7.08565600653565	0.459184417449049	0.074467869813535	0.359066140447834
Merged-chr14-30825630-4	chr14	30825112	30826112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028839)	promoter-TSS (NM_028839)	18.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	5.8999224382983	5.67179167831534	6.08841232731193	6.05997458266033	5.73389184463922	5.90375000005914	0.0247087829080775	0.938716542153332	0.986515091506254
Merged-chr14-73222723-4	chr14	73222220	73223220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-15171.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	6.29602955836369	6.35656764315171	6.05897627295921	5.99266063027263	6.36175947567357	6.18651242316735	-0.0937041523415174	0.753233033657135	0.938549578325581
Merged-chr12-3283164-4	chr12	3282670	3283670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	26799.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	6.40355996559103	6.8785275584181	6.62445774961926	7.15653825036057	7.26541464931648	7.04399461611126	0.780966268375767	0.00405840433622282	0.0524903074538782
Merged-chr14-60829264-2	chr14	60828764	60829764	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 11 of 18)	intron (NM_027436, intron 11 of 18)	44698.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	3.85089688981287	4.1039357273849	4.10304661753788	4.32953602283581	4.59318673719	4.17296186615079	1.00707170328325	0.0400712645982332	0.249159543878635
Merged-chr4-59438634-4	chr4	59438116	59439116	+	934.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163288)	promoter-TSS (NM_001163288)	17.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.65007551816249	8.11208633945474	7.74680101704625	7.09179315664379	7.02277466882743	7.01807493753425	-1.19337608803482	1.94755876465273e-06	9.72120394056535e-05
Merged-chr15-34357919-1	chr15	34357419	34358419	+	901.0	f0_balb.idr	promoter-TSS (NM_001256161)	promoter-TSS (NM_001256161)	-47.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	2.49778218885965	2.51934351760333	2.67012364077625	2.44093786349163	2.38473260173327	2.43004887282484	-0.885761797714859	0.269168277689792	1
Merged-chr17-5608790-2	chr17	5608290	5609290	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	116190.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.67987302497453	3.52049361914344	3.39636000181259	3.2803060774507	3.13542295552663	3.23300247801327	-1.311384947383	0.0348428384750988	0.228950714983497
Merged-chr7-44850410-4	chr7	44849921	44850921	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030488)	TTS (NR_030488)	414.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	7.61022032863367	7.6570597557263	7.81859862606427	7.72769463928375	7.71880480100253	7.62306970346412	-0.000939897446788671	0.996601978065864	0.999123561903955
Merged-chr12-100837429-4	chr12	100836920	100837920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 3 of 12)	ORR1F|LTR|ERVL-MaLR	58363.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	4.58139780232652	4.49077074526319	4.38594298904386	5.10656057076645	4.99660882731149	4.59550969479179	1.00480991986328	0.0190094794371224	0.156190457687773
Merged-chr9-105034640-3	chr9	105034181	105035181	+	819.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357439)	TTS (NM_001357439)	-18587.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	6.14525981137353	6.12665109947266	6.0767796354751	4.97389620626872	5.12917024662171	5.67343042905814	-1.55748217371949	1.38596065697395e-05	0.000531350991940159
Merged-chr8-84921723-3	chr8	84921212	84922212	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019945, intron 12 of 25)	intron (NM_019945, intron 12 of 25)	8377.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	2.45485185647844	2.64167477337819	2.73973382369559	2.60153344237689	2.41717672057179	2.56663761732749	-0.500113129764496	0.528192357381604	1
Merged-chr3-87528911-1	chr3	87528411	87529411	+	585.5	f0_balb.idr	intron (NM_001359750, intron 3 of 4)	intron (NM_001359750, intron 3 of 4)	3333.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.95524747760635	3.77126186426192	3.91894528151675	3.49426480467564	3.30249227409201	3.5830861112681	-1.51853425578934	0.00825025605892425	0.0879435442161118
Merged-chr7-126694784-3	chr7	126694289	126695289	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	MTC|LTR|ERVL-MaLR	994.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	3.99148267553463	4.02448845410898	4.12966581277001	4.07360302671496	3.94810129645807	4.00963227937848	-0.1076478331151	0.824803150211283	0.958596193929081
Merged-chr11-108224808-3	chr11	108224325	108225325	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	119063.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.88317564476005	4.07014591532405	3.88470729650723	4.37772100806891	4.4430602440503	3.95723302617449	0.942444118994247	0.0646216402501164	0.331269446497648
Merged-chr11-106093329-3	chr11	106092829	106093829	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	MIRc|SINE|MIR	8427.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	5.10462889172305	5.10215285006389	4.75094496093258	4.90211128019053	5.21058799217202	4.81768327456965	-0.00995553231719114	0.980346532388319	0.995512982807197
Merged-chr11-120625417-2	chr11	120624917	120625917	+	830.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105901)	promoter-TSS (NR_105901)	-415.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	4.55161102967211	4.79353707755059	4.86309770626038	4.53762912107092	4.58498865814157	4.70854165051677	-0.308571401420657	0.457025459889204	0.811993709825292
Merged-chr2-148490008-2	chr2	148489508	148490508	+	579.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46473.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.62459916241939	5.60357660449888	5.9539894801692	5.29087985677626	5.40449925863369	5.76509969855033	-0.441403047544215	0.207307499392455	0.598094463071578
Merged-chr8-33733043-6	chr8	33732556	33733556	+	977.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167922, intron 1 of 7)	intron (NM_001167922, intron 1 of 7)	717.0	NM_001167922	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	7.08914929796964	7.52564372577473	7.05013357941241	7.00495399824835	7.41970483557605	6.98316014409366	-0.128156813490137	0.653341913112866	0.903329521049756
Merged-chr10-8844818-2	chr10	8844318	8845318	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	41252.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.34022455415265	4.56563946794917	4.82564809599273	4.40465234737783	4.43295188666044	4.1439998077113	-0.609027834942972	0.193356284229774	0.580466489814592
Merged-chr12-80213925-2	chr12	80213425	80214425	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	46446.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	5.35400856561193	5.22864899005676	5.0223750669445	5.62166719161701	5.30651009856256	5.36362413138872	0.431985604553449	0.230705491403257	0.626416175824539
Merged-chr10-20594632-2	chr10	20594132	20595132	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-46304.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.17927543480301	2.6900182782157	2.9558610106761	3.05574938127316	2.68425426249088	3.2576001461199	0.274898746683388	0.7249028167941	0.929475409375828
Merged-chr4-45529392-2	chr4	45528941	45529941	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	1387.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	5.60352240563359	5.60343868749819	5.5742913010298	5.87029250954297	5.6027133894993	5.10575723747817	-0.0347038873250959	0.92502405713525	0.983106853140932
Merged-chr4-148501068-3	chr4	148500560	148501560	+	839.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	-598.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	5.69920184651202	5.93575837196958	5.52526991639294	4.65804812599047	4.67374891671522	4.71080681058861	-2.20451754186906	5.56986847182417e-09	5.37653846639844e-07
Merged-chr19-41371492-4	chr19	41371000	41372000	+	951.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	L1MA9|LINE|L1	13570.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.7833869372327	6.01932523047308	5.92324788841895	6.32766911498964	6.41259798791089	5.9354299905915	0.582331649054616	0.0600401015818493	0.317208326861033
Merged-chr5-97110824-2	chr5	97110324	97111324	+	724.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359913, intron 1 of 2)	L2c|LINE|L2	772.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	3.40210648169967	3.54093358376427	3.52121889249625	3.47009294599597	3.55712080994902	3.30744963032516	-0.119617830023221	0.839513513344294	0.962784121274377
Merged-chr8-68908814-3	chr8	68908260	68909260	+	750.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28205.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.78093904210696	4.41099051807114	4.65238228447136	4.8578301149794	4.67828759160512	4.75809417790814	0.3326740771056	0.426783513730011	0.793896908418028
Merged-chr7-80386683-4	chr7	80386175	80387175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1271.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	6.26549871262354	6.18533429408022	6.31795464933889	6.45473546412306	6.71709872393021	6.54309291385881	0.535530453045783	0.0489135202255444	0.280980061506876
Merged-chr6-39726392-3	chr6	39725910	39726910	+	823.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-947.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	4.95033203063947	5.32792801740168	5.39497669887851	5.09930636254357	5.19808065283545	5.34113538635084	-0.0425044286553247	0.909364481576043	0.97943692683942
Merged-chr19-5406590-1	chr19	5406090	5407090	+	1000.0	f0_c57.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-225.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	4.51586838326761	4.65452046436463	4.93249855675676	7.56442979082848	8.02717095475232	7.57684319972859	5.92695487584154	2.84203596872372e-44	1.18240064442782e-39
Merged-chr17-87302384-5	chr17	87301850	87302850	+	991.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	19464.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	7.28397084180834	7.39245650439129	7.45807410237969	7.29352214904665	7.47540629799122	7.31201162627337	-0.0138300377641355	0.95246318433883	0.989124260059756
Merged-chr11-117842238-3	chr11	117841732	117842732	+	853.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-7005.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	3.23065494382771	3.02642857901845	3.42198070734889	3.43539494851663	3.36237480451454	3.15019527261767	0.382987583578295	0.556344505732733	0.86357390983939
Merged-chr9-106332930-3	chr9	106332431	106333431	+	970.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-35701.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.98593693457609	3.03758996372152	3.19899055952402	3.77838454340826	4.26902951353353	3.94532307033219	4.30653237712432	1.02172287682746e-07	7.266283515817e-06
Merged-chr10-96188969-2	chr10	96188469	96189469	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37238.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.60983525806739	4.22619508472915	3.94947888064089	3.68899927117088	3.45037190921369	3.71701196186147	-1.1004599727533	0.0598371894535502	0.316648065561207
Merged-chr15-58271870-2	chr15	58271370	58272370	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52299.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	2.69115963694845	2.584799034793	2.71408475203518	2.67792312817924	2.38650943652714	2.59997092066569	-0.606840304673881	0.442584282221614	1
Merged-chr1-87622022-4	chr1	87621501	87622501	+	986.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1689.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	7.63327210455089	7.38427325185915	7.3053953463413	7.53852671950964	7.87122459348152	7.56591496318186	0.320755870718921	0.19583068463933	0.583474043308246
Merged-chr11-98943537-4	chr11	98943018	98944018	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3807.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.75388656445987	6.44670305979503	6.54795913413344	6.76780658098881	6.60778469840066	6.81488281096237	0.215468209792277	0.421173970926976	0.790157011473931
Merged-chr11-46076110-2	chr11	46075610	46076610	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	(CAGT)n|Simple_repeat|Simple_repeat	20126.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.9257477587325	3.35853012435187	3.24162272504006	3.91467244454473	3.72850869589537	3.79037414748209	0.862656361272603	0.193822370654857	0.581110936383431
Merged-chr17-35090167-3	chr17	35089662	35090662	+	987.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 1 of 19)	intron (NM_178592, intron 1 of 19)	871.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	6.39863520681136	6.42694413221529	6.04648383612115	6.33033045734521	6.94925493354568	6.2244270038177	0.402557053808992	0.230853631814755	0.62655634346664
Merged-chr4-132040826-2	chr4	132040326	132041326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	RSINE1|SINE|B4	8252.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.32734470229897	7.46582699260062	7.1598301000511	7.39669030568903	7.69265902204082	7.21752484593441	0.193549262571765	0.454040150677687	0.810100289331925
Merged-chr5-117307855-4	chr5	117307354	117308354	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11412.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	2.9871376733928	3.32047428060204	3.13853465600114	3.08571645692374	2.76272034544406	3.42772849019726	-0.157481914556599	0.831682332986808	0.960478468368024
Merged-chr6-87542811-4	chr6	87542308	87543308	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9549.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.10335810025363	6.88154144085466	7.20363796945658	7.19511041887641	7.36360244462726	7.20191697445767	0.295592912283587	0.230669807337273	0.626381219532661
Merged-chr4-141617475-4	chr4	141616994	141617994	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151462, intron 2 of 5)	intron (NR_151462, intron 2 of 5)	1139.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	5.17233803163429	4.76613681085635	4.42878022557231	4.96353426346208	4.67307245011525	4.54709609328186	-0.209476801489533	0.651841857641271	0.902896807825606
Merged-chr3-30992339-4	chr3	30991847	30992847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3424.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	5.09209971670096	5.3874849922178	5.30646443999256	5.13832888483389	4.97047194841455	5.07689607870024	-0.429288621980924	0.238887946970428	0.635588293519071
Merged-chr6-39418102-4	chr6	39417605	39418605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	1671.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	5.86052417020927	5.84269316726764	6.02590139737672	5.65101511538709	5.92733683291848	5.77978030391917	-0.192827889355093	0.53341244815066	0.852457858765356
Merged-chr5-136200390-2	chr5	136199890	136200890	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1436.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	3.89550304877064	4.03865841801652	3.83442861055485	3.95994981722626	3.78232787777532	4.23210796494834	0.192486062098861	0.713585569601302	0.92557476402444
Merged-chr10-67220452-2	chr10	67219952	67220952	+	686.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 7 of 25)	exon (NM_001242396, exon 7 of 25)	34702.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.24119250566182	3.26864231000864	3.14904403459074	3.21292663955379	3.19747269983369	3.64914405777388	0.55149554559258	0.393746853776334	0.771931441253922
Merged-chr12-71830002-2	chr12	71829502	71830502	+	605.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1066.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	3.27055669201765	3.50391950460137	3.58190825000936	3.46801249332879	3.26305223645037	3.38446708249951	-0.31730768264729	0.600471859331199	0.881684892224841
Merged-chr7-125601238-3	chr7	125600736	125601736	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2193.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.54521221655553	6.57018654905041	6.79640272811424	7.29684431113876	7.4233503008142	6.8704025369749	0.910025705167084	0.00094419444055046	0.0172139638495449
Merged-chr14-121378457-4	chr14	121377962	121378962	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	CpG	768.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.35892929496932	6.62895811409041	6.68796793397719	6.53553842304188	6.53521934652782	6.83500529805577	0.116563685723609	0.675080655880475	0.911995407960456
Merged-chr18-46564866-3	chr18	46564360	46565360	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	9673.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	3.46440257411825	3.40663326615462	3.48148154701538	3.49674080822228	3.77812377871766	3.71118689260669	0.788413554903058	0.166843499118962	0.54240433228749
Merged-chr2-25628746-7	chr2	25628183	25629183	+	980.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-709.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	6.84875942244773	6.52599202508996	6.39310006442583	6.8685869203064	7.09554909677762	6.41297271500783	0.351290418888284	0.260124318332663	0.657649400461384
Merged-chr4-132884479-4	chr4	132883982	132884982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-24.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	7.62702833731702	7.93970261838773	7.59160043141334	7.39695349388459	7.62428516508572	7.57120036123329	-0.288249145234754	0.230633635356513	0.626381219532661
Merged-chr14-30625164-4	chr14	30624750	30625750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	958.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	7.40866793556134	7.40254831341454	7.66992052617795	7.65002603509065	7.60309813760032	7.32550846701069	0.06801668638515	0.778639910194225	0.945520893795831
Merged-chr7-43654702-4	chr7	43654211	43655211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	5450.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	4.86250232549603	4.59108034331555	4.80375766820415	4.78058817055966	4.74110013382873	5.07583646820944	0.247172323143793	0.543942869774866	0.857551302506722
Merged-chr2-164839490-2	chr2	164838990	164839990	+	821.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011125)	TTS (NM_011125)	5717.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	3.11283662058222	3.05893165559493	3.39099399330771	3.15665964516668	2.70613085448691	3.51124713976408	-0.098026348464904	0.898979168995922	0.976432549466174
Merged-chr3-15345781-4	chr3	15345273	15346273	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13471.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	3.27766209227684	3.43781945332423	3.25704409025659	3.60975168458988	3.42541379859369	3.50067437351843	0.69395565256088	0.246884624156999	0.643991010781048
Merged-chr11-80171379-4	chr11	80170851	80171851	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	MIR3|SINE|MIR	-12521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	8.03151579293026	7.7913602547445	7.9814861170203	7.84681520634627	8.05914156748439	7.6911759484989	-0.078992746562489	0.73492484066643	0.932617455907478
Merged-chr11-73129498-3	chr11	73128886	73129886	+	711.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 21 of 30)	intron (NM_001361245, intron 21 of 30)	8908.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	5.74389689301247	5.6687555854924	5.77485615607493	6.05551129458361	6.37212424352136	5.86313031529619	0.704348702716305	0.0263316864822587	0.1926604547456
Merged-chr1-183633799-2	chr1	183633203	183634203	+	892.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115274.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.23671539044406	4.12323348141521	4.84389350424069	6.28962991602088	6.43552056180793	6.17483416643686	4.1172479789186	3.04677551647617e-21	2.46132133179563e-18
Merged-chr16-36939321-4	chr16	36938810	36939810	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	RLTR40|LTR|ERVK	4327.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	5.94871010780334	5.7716308400654	6.13903765112912	6.20379393333502	6.45176566887575	6.3382695221279	0.6578901000032	0.0263126763851018	0.192611272394366
Merged-chr5-150673702-4	chr5	150673207	150674207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346503)	promoter-TSS (NM_001346503)	-120.0	NM_175310	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	5.29524850055494	5.06024943157343	5.42406770046228	5.38955019021824	5.0491699884529	5.11049565969161	-0.141443195598871	0.704112179648937	0.92237304068754
Merged-chr9-108936683-4	chr9	108936177	108937177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	29.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	6.6618041573112	6.66262402379478	6.66242366081785	6.76923221793028	6.4692106665883	6.44089292578445	-0.145882210955868	0.585036380218024	0.87477909583779
Merged-chr5-45492420-4	chr5	45491936	45492936	+	918.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-938.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	6.14405267003276	6.32050178681895	6.01656259339865	6.34537313365109	6.37814137205283	5.79222830359663	0.0670517627288692	0.835005986793745	0.961451138529569
Merged-chr6-72104956-2	chr6	72104456	72105456	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	B4A|SINE|B4	7348.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.61547635065131	4.94901095302489	4.9874648356715	5.09425219584293	5.14274097214724	5.18509209826495	0.611249183763531	0.112145452803103	0.44735600157441
Merged-chr15-99876469-2	chr15	99875969	99876969	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	6.86737253984412	7.14811821195735	6.77396027442276	7.1606055923382	7.40572228390785	6.98138300359329	0.391242313697923	0.148125153676388	0.513628453046031
Merged-chr10-94918042-2	chr10	94917542	94918542	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	26536.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.64522024334774	3.85568015861155	3.92387845726741	3.32162179366602	3.42685599903558	3.54439028826158	-1.35506706754161	0.0197235237895064	0.160003409133007
Merged-chr11-68854015-3	chr11	68853594	68854594	+	770.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-963.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	6.63053596958384	6.98465097410675	6.8150212771876	6.49525116087418	6.79816310462222	6.67186332603042	-0.241880049394156	0.374711592666625	0.758118627242714
Merged-chr12-100161033-1	chr12	100160533	100161533	+	627.0	f1_c57bl6.idr	Intergenic	ORR1A0|LTR|ERVL-MaLR	-1380.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	2.39683893462734	2.46981421590716	2.39842508072888	2.57805158325366	2.74409089863076	2.66850363740804	1.46455412353018	0.0690277046827625	1
Merged-chr8-13651052-3	chr8	13650467	13651467	+	717.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	MTC|LTR|ERVL-MaLR	26620.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.24693049856186	4.74919552573851	5.45060947632398	4.97593983492997	5.3313353773141	4.97820251310561	-0.120412052100556	0.775026115268654	0.944524767111052
Merged-chr9-100642863-3	chr9	100642366	100643366	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-582.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	7.70154825677683	7.86807661393701	7.61483948196054	7.64277772978259	7.9633484221754	7.7267288693412	0.0768778795230749	0.742996304726189	0.935417543785804
Merged-chr1-40790680-4	chr1	40790181	40791181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172499)	promoter-TSS (NM_172499)	-24.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	5.9192296741555	6.03001451891741	5.86887164585244	5.81588218452494	5.56664907463803	5.58327884724061	-0.512557086214693	0.0995429838195791	0.420731832330245
Merged-chr5-30888528-4	chr5	30888035	30889035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-317.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	5.71024660094574	5.66365173194884	5.7969761603743	5.68928392207656	5.85770502274203	5.47031484005736	-0.044515548797586	0.890728846989505	0.974557844397176
Merged-chr5-130075090-4	chr5	130074543	130075543	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	1717.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	2.52160612889351	2.41976503327309	2.44798463480767	2.51332987850235	2.56764415916422	2.64810920094519	0.666581242936733	0.395325075883861	1
Merged-chr1-125389036-2	chr1	125388536	125389536	+	880.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	46691.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	2.99831178192223	2.95404887674555	3.36375681749289	3.17911456943376	3.13330132672599	3.16140262535995	0.206667826934076	0.757112987917282	0.939819795914786
Merged-chr7-101905817-4	chr7	101905333	101906333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-4.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	8.8755008147085	9.11437230467565	8.59309475329445	8.8561799295421	9.01068385467891	8.53417660685095	-0.0863087703307434	0.727590680067915	0.930204882969987
Merged-chr4-141631525-2	chr4	141631025	141632025	+	586.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033150, exon 10 of 20)	exon (NM_001033150, exon 10 of 20)	-7691.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	2.36915603832102	2.37243997421514	2.66060659666166	2.42167509437011	2.26485329309491	2.73357474798484	0.0769938186340703	0.928155708467927	1
Merged-chr13-95845188-4	chr13	95844762	95845762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	PB1D10|SINE|Alu	46660.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.62344113710336	6.64204371838251	6.65958655817693	7.32365462675287	7.59171873038671	7.36055847819566	1.20828430830187	7.90266361278495e-07	4.41911850734281e-05
Merged-chr17-10703564-2	chr17	10703045	10704045	+	719.0	f0_balb.idr|f1_balb.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	136646.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	6.28185659887336	6.79217129978486	6.30398640036144	4.62568397113852	4.5975404429329	4.73871130434658	-3.66991323740372	1.56645914053684e-20	1.11403360825461e-17
Merged-chr13-95639827-3	chr13	95639347	95640347	+	996.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-21381.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	3.62826005019115	3.31409883272328	3.7209804504679	3.92319412025867	4.28672751466785	3.94667194006961	1.66644501215393	0.00378931970798156	0.0499574504975625
Merged-chr7-143283992-7	chr7	143283556	143284556	+	716.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	12491.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	3.93347368989599	3.93588720131675	3.98754979924868	4.3244426310374	4.0799629758732	4.3314317654459	0.844103029048673	0.0816396182630246	0.377936736701323
Merged-chr14-45319936-2	chr14	45319436	45320436	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-1364.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	2.20744175658723	2.42791788413784	2.42469204890593	2.14899409605283	2.04123122277545	2.3729300927295	-1.1740268931073	0.203199977445346	1
Merged-chr3-22058412-3	chr3	22057911	22058911	+	849.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18241.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.06511304043332	3.07803507820009	3.12297013296	3.2523453291283	3.11842701730951	3.4163515211685	0.740605580861059	0.249180388993444	0.646134245609601
Merged-chr8-66443011-2	chr8	66442511	66443511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	43519.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	3.70976459698901	3.78320235981956	4.06397969484139	3.85492079998866	3.4654978222199	3.64569451983688	-0.631240346246613	0.265464144530711	0.663161206920213
Merged-chr1-192536647-4	chr1	192536153	192537153	+	916.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	234566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	5.78742109056232	5.82325205563235	5.00338431336192	5.20162656080452	5.09017786816821	4.81705467039974	-1.07945460030548	0.010423856691401	0.103440461249623
Merged-chr6-136692689-1	chr6	136692189	136693189	+	760.0	f0_balb.idr	Intergenic	Intergenic	-30796.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.70356909051767	2.35334319767114	2.66243373679669	2.33137217554671	2.48702927840997	2.35118414672535	-1.13060606713314	0.189942661412005	1
Merged-chr2-167754073-4	chr2	167753569	167754569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62892.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.21421904617629	7.77494757450641	7.89907539158602	7.80393465192551	7.7649373307718	7.49043545076024	-0.400323085974571	0.10627890797429	0.43523050445773
Merged-chr4-47275187-4	chr4	47274719	47275719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67207.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.83162218590603	5.96810121334964	5.73689092793308	6.03654866086987	5.52954956918192	5.57424084192869	-0.211998222494677	0.530447745806857	0.851138631874134
Merged-chr13-73604326-2	chr13	73603826	73604826	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146047, exon 1 of 17)	exon (NM_146047, exon 1 of 17)	324.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	7.76767572001583	7.6098396731385	7.36119923772467	7.86612220747271	7.41864922363082	7.06125158142219	-0.139800426516838	0.634885755180011	0.89636184389676
Merged-chr18-65802445-4	chr18	65801921	65802921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025468, intron 1 of 5)	intron (NM_025468, intron 1 of 5)	1843.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	6.5549861078277	6.915698171264	6.66690291767692	7.00827271364308	6.99083853672222	6.3280083832671	0.155377235549526	0.616172165316875	0.888292275056074
Merged-chr1-65230751-4	chr1	65230243	65231243	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	44058.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	4.69394896453332	4.97082484730597	4.8137025576597	4.76413925188861	4.94736048631597	4.76291581882551	0.00250138117199571	0.994990802758177	0.998961028701257
Merged-chr19-3283002-4	chr19	3282505	3283505	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009212)	promoter-TSS (NM_009212)	5.0	NM_009212	20589.0	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	6.54399324364205	6.30598755479919	6.37667416059038	6.40976889149	6.20332338524955	6.12791909395404	-0.263018630416593	0.352632298152936	0.740194084833795
Merged-chr9-95566519-4	chr9	95566015	95567015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6698.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.14535991580119	7.18480052109096	6.9359064395437	7.27551939249466	7.62028864440116	7.09238603168536	0.388951250820003	0.144476317470696	0.507214386763159
Merged-chr6-123289911-4	chr6	123289417	123290417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019948)	promoter-TSS (NM_019948)	-46.0	NM_019948	56619.0	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	3.06373785077919	2.95479860702827	3.10392606297767	3.12174545678907	2.87063782954122	2.93676436159129	-0.278804793273222	0.681977403821498	0.914908045004202
Merged-chr1-160905718-2	chr1	160905218	160906218	+	910.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-693.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	5.33214475669045	5.14391054712099	5.2026183296485	5.01080285367196	5.08224283265274	5.06410905735226	-0.365615825550585	0.30770866721711	0.703816371678414
Merged-chr2-11524027-4	chr2	11523532	11524532	+	931.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-21942.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.74899965986895	3.5465902162367	3.93184700970867	3.96130528478003	3.64556779946614	4.04584405844355	0.457945247147667	0.410212008569335	0.783116615634315
Merged-chr4-130919890-4	chr4	130919380	130920380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6546.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	7.83212089099049	7.75482208224914	7.67811919912194	7.75108910041787	7.64759905513687	7.34406951909721	-0.230270519104624	0.330006005916008	0.72162759463583
Merged-chr13-94005893-3	chr13	94005355	94006355	+	765.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51941.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.00138862523269	3.46940115915698	3.51936484455955	3.49281305095246	3.34299102845797	3.53753621913247	0.410561184921072	0.531712514554365	0.851792887243639
Merged-chr7-129573951-2	chr7	129573451	129574451	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-17912.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	4.51789559111182	4.95679515176727	5.36837662535548	4.61281969241907	4.46391828488079	5.29683701130249	-0.324630668025031	0.521076501856288	0.846922225237145
Merged-chr2-27711759-2	chr2	27711259	27712259	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	1176.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.53171249252788	5.68614554273594	6.43346031842085	5.83146802321687	5.70229801590618	6.25412120090345	0.0105241303191697	0.978800383159534	0.995160277495735
Merged-chr5-92280528-1	chr5	92280028	92281028	+	924.0	f1_c57bl6.idr	Intergenic	Intergenic	-2347.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	3.27348079690144	3.06735384389746	3.33054293481982	3.12434928008896	3.33554538921117	3.60639136478462	0.555925265423875	0.391844052170249	0.770775156449779
Merged-chr4-125122588-4	chr4	125122009	125123009	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	5372.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.74450274286098	5.75115344319819	5.92031229470278	6.01679673761428	5.87247984812721	5.83643379747221	0.199208389275722	0.510433789450295	0.840886591313675
Merged-chr2-3621554-4	chr2	3621047	3622047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-91911.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.52890104487547	4.61529636327184	4.63427472670891	4.63251427685335	4.43542542990059	4.73832444285801	0.0150145742908389	0.971511529166714	0.99377981119604
Merged-chr16-22498304-1	chr16	22497804	22498804	+	553.0	f1_balb.idr	intron (NM_001346673, intron 21 of 23)	intron (NM_001346673, intron 21 of 23)	-13176.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	3.53121451797758	3.41460112483244	3.16238540471337	3.40981161610089	3.11039473103568	3.67841228245532	0.127169526084743	0.848651199603372	0.964356989789491
Merged-chr11-117961479-2	chr11	117960979	117961979	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7887.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	5.14740457403071	5.0939714261099	5.23779890215098	4.98461469944218	4.78182552826448	5.30069794518116	-0.279912194582237	0.468923673656252	0.818798418516974
Merged-chr19-55862710-3	chr19	55862204	55863204	+	691.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-32617.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.91237680816509	2.93034529516247	2.99226317462472	2.96028773203001	3.11093579372618	3.17810437742517	0.657583656417066	0.326055730183887	0.718499720007363
Merged-chr18-10178335-2	chr18	10177835	10178835	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009071, intron 1 of 32)	B2_Mm2|SINE|B2	3457.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	4.13153876524935	4.33840128965367	4.27710936640393	3.84393653464943	4.17891087237147	4.3009605863649	-0.366843036377526	0.458063182707318	0.812791853920592
Merged-chr9-61056478-4	chr9	61055979	61056979	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39410.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.12545179100271	3.82966196601715	4.18188475957882	4.42127221500047	4.29738605388435	4.15668858452875	0.702167459394815	0.150311499991975	0.517246479850651
Merged-chr16-32813146-4	chr16	32812648	32813648	+	926.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	3.35338563101425	3.35662169081744	3.18121853979369	3.25157289878368	2.70475151907033	3.19545715270688	-0.960114248610684	0.20630019210824	0.596855755513016
Merged-chr10-85952117-7	chr10	85951619	85952619	+	974.3843380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	5674.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	5.21138763601853	5.19644326790991	5.24794758754216	5.21207412043108	5.31122518743936	5.14639551573811	0.0306376668489613	0.929970231493322	0.98436656024861
Merged-chr6-108835947-2	chr6	108835432	108836432	+	748.25	f0_balb.idr|f0_c57.idr	intron (NM_138677, intron 1 of 11)	RSINE1|SINE|B4	7291.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.85642923387332	4.58630576575051	4.87043808761213	4.82480903539154	4.788690219118	4.86265342535375	0.116604130181973	0.769636237694638	0.943163994552136
Merged-chr8-41374775-4	chr8	41374281	41375281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-84.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	7.69869504739466	7.69439395928879	7.67091461366757	7.74170624203234	7.98019624124941	7.74534167720925	0.207585812413313	0.34943211461907	0.737499871486835
Merged-chr18-77785779-2	chr18	77785279	77786279	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-8771.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	2.40029922113695	2.26369498532507	2.50980173287386	2.2908645739766	2.37191288357817	2.3945022688749	-0.246400905634839	0.766752342035525	1
Merged-chr16-48863486-3	chr16	48863026	48864026	+	928.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-9082.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	3.8194551030538	3.67654126037297	3.55496700160822	3.73450414749167	3.57160755736291	4.02741077879399	0.293852164155971	0.604278112209985	0.883017336250368
Merged-chr3-38143303-4	chr3	38142785	38143785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64834.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	7.09137474742575	7.22867184578643	6.62812961646052	7.36059582694229	7.59897607956032	6.63195897222882	0.382148261804142	0.261228737230774	0.65883279652043
Merged-chr1-87638394-4	chr1	87637896	87638896	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	18084.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.68506731232764	6.75063699573511	6.70206017692876	6.70744041246936	6.8886067976246	6.77643222357255	0.130238295921936	0.603953628254753	0.882883084260734
Merged-chr18-56874726-4	chr18	56874215	56875215	+	710.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	50833.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	3.16467801997486	3.17652514998888	3.64754125424856	3.18832090204913	3.45200524847215	3.24529029043501	-0.145732064364601	0.825392546757919	0.958821343666982
Merged-chr6-136621004-2	chr6	136620521	136621521	+	778.333374	f0_balb.idr|f1_balb.idr	intron (NM_025806, intron 6 of 10)	intron (NM_025806, intron 6 of 10)	40872.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.410447181435	2.19039730868372	2.29300159045648	2.52897109264393	2.38783818267126	2.7486613731863	1.62891271688476	0.0627926423817364	1
Merged-chr19-6242480-4	chr19	6241970	6242970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	802.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	8.37591151967395	8.59101523950938	7.97710655988355	8.23283759166621	8.65276812233365	8.0941855154019	0.0144753520049235	0.957740800046334	0.989969855526119
Merged-chr1-156449223-1	chr1	156448723	156449723	+	587.5	f0_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	25105.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.90124358131356	5.25498108978466	5.21892194318517	4.63601297480665	4.44262298791011	4.64807095782222	-1.27398505193119	0.00176080464355277	0.0280173520861791
Merged-chr2-71867649-2	chr2	71867138	71868138	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-5586.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	4.02062856836894	3.82595073642762	3.83774066645744	3.94442801934413	4.23291169268073	4.36976455610819	0.844973337789101	0.0977378242381145	0.416925964185171
Merged-chr10-71383751-3	chr10	71383255	71384255	+	945.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347191, exon 6 of 6)	3' UTR (NM_001347191, exon 6 of 6)	35992.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	2.99680130696006	3.03078423309461	3.35602701928157	2.85224542004213	2.83172350570044	2.92760135789179	-1.24355669611094	0.0780493557208709	0.368845675182172
Merged-chr2-13413708-4	chr2	13413191	13414191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	78185.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	4.15024667688496	4.04744553187674	3.92821593312023	3.95055625100459	3.91263436337313	3.67111803768678	-0.581485396129844	0.263918250172924	0.661879105198449
Merged-chr9-13536884-4	chr9	13536377	13537377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83112.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	6.42268807325073	6.53106146498136	6.30009032049682	6.11154693009367	6.21117767406893	6.10579491796237	-0.464080716386261	0.094610425436107	0.410039287446617
Merged-chr19-26749268-3	chr19	26748747	26749747	+	794.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026003, intron 1 of 8)	intron (NM_026003, intron 1 of 8)	844.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	5.61501124605938	6.0012262220984	5.78944612247974	6.23124800432379	6.05114261498206	6.31277591210378	0.658680489673239	0.0346654415687344	0.22827176812688
Merged-chr7-140116483-4	chr7	140115985	140116985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053119)	promoter-TSS (NM_053119)	-62.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	6.99172479975573	7.4299012006071	7.2551477738484	7.32991973199637	7.5229083706091	7.10161481340513	0.14664508952111	0.582302477268267	0.873702353685426
Merged-chr1-88224662-3	chr1	88224164	88225164	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-2356.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	5.63482442488246	5.5758120963287	5.69302723137945	5.682546879052	5.86421455969459	6.34573433911837	0.629923899996731	0.0656757605469471	0.334337637417582
Merged-chr17-46154523-4	chr17	46154020	46155020	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-969.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	3.69724788403071	3.30154995848772	3.55547094419214	4.06055203768999	3.68060124356408	4.12244234410781	1.43357572457017	0.0158540212393907	0.138119715138438
Merged-chr11-69689830-4	chr11	69689358	69690358	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-4304.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	5.74565315243248	5.18161162435317	5.91680544441227	5.425528636607	5.16809045060939	5.48506177635389	-0.541002748041103	0.161214468465871	0.533942898863986
Merged-chr5-124623184-4	chr5	124622738	124623738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 14 of 18)	intron (NM_026486, intron 14 of 18)	-5814.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	5.76238953038187	5.95438238702951	5.74304712526993	5.9131832263159	5.97460744737738	5.7244172720716	0.0975840913194247	0.752239860436668	0.938157651950668
Merged-chr2-181272948-2	chr2	181272448	181273448	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	15018.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	4.50400736581824	4.45490509835134	4.76632196411465	4.47886943451728	4.65816996599288	4.90044303917812	0.265380648980192	0.539214100586879	0.855798097957789
Merged-chr13-45005325-4	chr13	45004809	45005809	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3213.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.43475905726893	5.30570084173112	5.44002947826244	4.85905993867666	4.72241781774216	4.84293722087965	-1.24690109829431	0.00067376718250045	0.0133036837819345
Merged-chr11-31872918-7	chr11	31872502	31873502	+	874.045349	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290676, exon 1 of 9)	exon (NM_001290676, exon 1 of 9)	2062.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	5.31427575069313	5.28004816174232	5.06166379419078	5.50808741132124	5.31734882133292	5.42463257703115	0.361974708635464	0.299666118864851	0.696379589028967
Merged-chr1-164307570-4	chr1	164307062	164308062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293313)	promoter-TSS (NM_001293313)	-75.0	NM_001357052	66352.0	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	6.3777531514927	6.38544086117776	6.19616813741631	6.45098332124495	6.31818087688224	6.1919126505112	-0.00045867887403486	0.998685633441507	0.999767255399497
Merged-chr3-115695270-4	chr3	115694738	115695738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19817.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.9756620899526	6.33758605208298	6.58130994917798	5.49265619013104	5.69259200642173	5.36177988033968	-1.3719853888834	7.60983711996305e-05	0.00225097521179483
Merged-chr18-77967064-4	chr18	77966565	77967565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 12 of 43)	intron (NM_001195633, intron 12 of 43)	28598.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	5.57617214306673	5.47308776044315	5.96668776260026	6.06437642390102	5.78391642891042	6.0053280641371	0.496167378652493	0.135724556239472	0.492469297371423
Merged-chr4-59181496-4	chr4	59180982	59181982	+	768.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8068.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	3.37440493111341	3.64020150499012	3.41571237693302	3.95475050927712	3.83714484910027	4.06106872794649	1.55292330764353	0.00689697967518494	0.0772907588973453
Merged-chr13-105227189-4	chr13	105226670	105227670	+	920.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	Lx9|LINE|L1	65844.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.74587632601157	3.49984381729728	3.86291203358097	3.5678553243552	3.47569136302221	3.78825950332383	-0.330502384050831	0.563420088594783	0.865946722410681
Merged-chr11-114826871-4	chr11	114826362	114827362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24670.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.47918469632383	4.42967885991725	3.80186069284627	3.82430092421801	4.20845460920238	4.14202062424663	-0.569690653498285	0.305375178242452	0.70154336825049
Merged-chr19-34586128-2	chr19	34585628	34586628	+	831.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010501, intron 1 of 1)	intron (NM_010501, intron 1 of 1)	2599.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	4.79348442932583	4.84917789802031	4.98504766849189	5.56103423374461	5.35414383483322	5.5745692259674	1.28254635343033	0.00037450949451324	0.00835671386952472
Merged-chr6-97284007-2	chr6	97283547	97284547	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-31267.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.03454348082566	2.78148773350697	2.88784028616251	2.93686218411978	3.0499353311756	3.60817030503844	1.39696889113575	0.060218844281151	0.317728010996667
Merged-chr6-72113507-4	chr6	72113013	72114013	+	997.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	MTC|LTR|ERVL-MaLR	9427.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.70152418320118	5.78132849743144	5.98959578413706	6.07389783115006	6.33361304199941	5.8579320766471	0.514610982050271	0.104950528154987	0.432291646290784
Merged-chr17-87106849-4	chr17	87106383	87107383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-796.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	7.75088017499923	7.8668695185084	7.77621813070173	7.81539474831483	7.97646065668491	7.69108772444577	0.056727847136658	0.798956206754068	0.952142593941544
Merged-chr9-100497283-1	chr9	100496783	100497783	+	672.0	f0_balb.idr	exon (NM_001324530, exon 2 of 3)	exon (NM_001324530, exon 2 of 3)	9573.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.74559581730147	3.62821073809502	3.69412959748088	3.70821796131075	3.57059516604977	3.81434845854314	0.0144657204134408	0.97876249120334	0.995160277495735
Merged-chr5-25662835-3	chr5	25662363	25663363	+	959.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	42934.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	5.95282290564637	6.19559257311056	5.95433869130268	5.52506201520107	5.44766405429135	5.63665868874969	-0.929216949829303	0.00298965788164014	0.0420168323516287
Merged-chr6-134067166-3	chr6	134066671	134067671	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	MTD|LTR|ERVL-MaLR	31471.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.32297596891683	5.63059515402629	5.32648790050262	5.44266559353282	5.27706523214692	5.1909145395248	-0.257012508718775	0.466390464760905	0.81756626270515
Merged-chr10-93484678-4	chr10	93484179	93485179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008517, exon 19 of 19)	exon (NM_008517, exon 19 of 19)	-4089.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	6.97701298322508	7.09802887509074	7.01990517386538	6.44000369016763	6.49370583224003	6.26985906969913	-0.972884802821036	0.000166825003387142	0.00432435354574371
Merged-chr8-13685836-4	chr8	13685348	13686348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-8261.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.26419990787257	3.03465865962922	3.23193743124438	3.1767681660368	3.35733509019703	3.35912498357685	0.502830861595621	0.427893456261777	0.79474992357457
Merged-chr3-89869776-2	chr3	89869276	89870276	+	965.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310676, exon 10 of 10)	3' UTR (NM_001310676, exon 10 of 10)	38406.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	2.26010862303189	2.38261467437973	2.43708887398674	2.16595137927355	2.15881939372289	2.32071122948485	-1.02363361931767	0.239133740404861	1
Merged-chr4-103214754-4	chr4	103214227	103215227	+	989.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356276, exon 1 of 12)	exon (NM_001356276, exon 1 of 12)	449.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	6.42437219618928	6.55535913685566	6.62074267056891	6.83977906749416	6.22460503353491	6.37808564934159	-0.0385918815571729	0.899206947330476	0.976510508522132
Merged-chr10-67386241-4	chr10	67385766	67386766	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100985.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.26758408657065	3.04557925289172	3.08707682082906	3.17804688581091	2.93198752386247	3.27445992975939	-0.0391634645749567	0.953387192584893	0.989446911725587
Merged-chr5-88593484-2	chr5	88592984	88593984	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	(CA)n|Simple_repeat|Simple_repeat	9971.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	4.44964312289021	4.43517617330465	4.33092435261479	4.5230116281341	4.29099426107882	4.72400308792758	0.259129495674322	0.563399519497703	0.865939139929528
Merged-chr13-112365981-4	chr13	112365445	112366445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	77427.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.84923733283243	5.0623149250053	4.90057667181306	4.66271669926829	4.29852346261327	5.30829873501823	-0.26919997912275	0.578744708715504	0.872437129840066
Merged-chr12-111431599-2	chr12	111431099	111432099	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028807)	TTS (NM_028807)	-11062.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.31595546244904	6.43942217789048	6.75399827449486	6.30888121820311	6.60349623860709	6.59666035237159	0.00688041675909429	0.981023181882538	0.995657460731624
Merged-chr12-110991750-4	chr12	110991230	110992230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	5.10238946931035	5.02430747852095	5.27893150986622	5.01658596191997	4.92130901126386	5.0184508519266	-0.316298065591851	0.391118612079962	0.770185717050041
Merged-chr11-55023233-4	chr11	55022736	55023736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10235.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	5.74202701067709	4.8926166504743	4.87863133057408	5.11138709500859	4.7979387687066	4.9848469690857	-0.579542501764963	0.202269359911821	0.592037037411804
Merged-chr6-50303721-4	chr6	50303218	50304218	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	L1MA8|LINE|L1	-41949.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.40073785439015	5.6013852914562	5.38423132689729	5.59520883865912	5.64905773740782	5.56708428619793	0.255014256247527	0.435177819743765	0.798867695308298
Merged-chr5-91960163-3	chr5	91959661	91960661	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026557, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	2395.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	3.88263487163088	3.63654738688796	3.96565134469858	4.13909961641239	3.76338595982108	3.78264963177659	0.240159716519718	0.658843079562589	0.90510021569192
Merged-chr4-9676443-4	chr4	9675941	9676941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7097.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.95896220158011	5.96937974085112	5.94702946572638	6.03572827319549	6.11411974845927	5.75331297030532	0.0528370103378643	0.86119213139349	0.967789299492425
Merged-chr2-32982141-4	chr2	32981633	32982633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-50.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	5.84486682677462	5.81070504553006	5.89873837711802	5.87482819201776	6.00096482493106	5.73171211237532	0.0626308696666771	0.836617349571489	0.962001762335242
Merged-chr3-89200023-4	chr3	89199526	89200526	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2899.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	4.43346320664599	3.92117222486865	4.78392315607469	4.3287629821134	4.52340417515971	4.59573785608245	0.163428194356432	0.751752828791072	0.937978356481604
Merged-chr7-141020619-3	chr7	141020125	141021125	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-3733.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	4.13911170981855	4.01351704010605	4.38121810198105	4.71152441364124	4.53193857376505	4.61294128446358	1.15656472156085	0.0107379782058783	0.105637939294718
Merged-chr10-68241205-4	chr10	68240711	68241711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	37515.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.36103614921336	7.30444604141829	7.18126271675285	7.43803885062661	7.55804870368082	7.13686930651585	0.165228017452692	0.505210268004526	0.838052191545635
Merged-chr3-116170279-3	chr3	116169758	116170758	+	698.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-40570.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	2.55661527930272	2.37790835188427	2.64135087018634	2.46335110310599	2.30685487550625	2.77366236828418	-0.0161769669321706	0.984601829167459	1
Merged-chr2-174434285-2	chr2	174433785	174434785	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	4754.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	2.98938967229219	2.93877991916437	2.97159281013343	2.89276269729838	2.8240434316096	3.32003314653167	0.260689817444362	0.71371808668743	0.925594279345516
Merged-chr19-21779284-2	chr19	21778784	21779784	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 1 of 23)	intron (NM_001033759, intron 1 of 23)	944.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.58656181776074	3.88168351468798	3.64875087878058	3.83684229356011	3.78719395596596	3.92479086661391	0.419811002837509	0.436889796212408	0.799681606793859
Merged-chr16-31930412-2	chr16	31929912	31930912	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3439.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	2.86562435756867	2.82609699670859	3.3566060890617	3.03525112911647	3.02941051955772	3.21700107582089	0.273577972577263	0.702200682430941	0.921835734877076
Merged-chr2-29125562-1	chr2	29125062	29126062	+	1000.0	f0_balb.idr	intron (NM_198033, intron 1 of 25)	CpG	570.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	6.83532042000796	7.00697063989295	7.07205160703007	6.99735548784919	6.86469827032411	6.57397031034185	-0.21484386449233	0.417998717637717	0.788473936634102
Merged-chr14-52019701-6	chr14	52019282	52020282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	-69.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	8.69024558540022	8.54590580302826	8.30431656820659	8.72386849697243	8.63921913404211	8.35968660731866	0.0824244300797567	0.720526462108117	0.928214725379789
Merged-chr3-90079530-4	chr3	90079038	90080038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293749)	promoter-TSS (NM_001293749)	17.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	6.86186241078313	7.201442738333	7.32735474638073	6.9845792844406	7.41352728018227	7.38462069767186	0.203955780144211	0.458280466399118	0.812961658694989
Merged-chr1-136345212-2	chr1	136344712	136345712	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	892.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	5.64924478867704	5.67402816397567	5.94233941787404	5.45261468450872	5.44664579652108	5.34369156146432	-0.624988954239745	0.0579656932412927	0.311094517751644
Merged-chr19-55585500-5	chr19	55585016	55586016	+	819.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	116688.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.58824476735544	7.81844085264499	7.51276331464154	7.54883964931057	7.72453875009457	7.5291029456983	-0.0629614800747501	0.788116605824273	0.948862819864542
Merged-chr5-149245134-2	chr5	149244634	149245634	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-19870.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.85062381777604	5.11366198794809	4.88468950247858	4.82127820722533	4.56787467475138	5.0540650459431	-0.318904783222844	0.437941687292286	0.800355350220733
Merged-chr17-34606458-4	chr17	34605938	34606938	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	577.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	6.40791742070247	6.19858410333641	6.41865884243132	6.30475055577946	6.15917611862357	6.3094569759789	-0.144139812985076	0.605368348155685	0.88352351689788
Merged-chr14-52197324-4	chr14	52196816	52197816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033618)	promoter-TSS (NM_033618)	-77.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	7.91738894381459	8.03772725047148	7.74219727641088	8.10092070338811	7.9882992925505	7.90015798086159	0.128754023922922	0.563354456343761	0.865926383742263
Merged-chr11-83282363-2	chr11	83281863	83282863	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166028, intron 2 of 4)	intron (NM_001166028, intron 2 of 4)	4363.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	2.23780939096193	2.24214792681169	2.18934844279929	2.38174773293913	2.20307599013044	2.5868614452947	1.12748889878968	0.198413938755401	1
Merged-chr3-116508160-4	chr3	116507649	116508649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025517)	promoter-TSS (NM_025517)	26.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	5.09843233077757	4.72139133423876	4.62843823714708	5.10283471709882	4.51995604965795	5.07313578982799	0.175970028582426	0.695300343902996	0.919230846475587
Merged-chr1-155091502-4	chr1	155091010	155092010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8126.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	7.09428613830895	6.9451559843515	6.83624062757549	7.00905469041686	7.00961066755994	6.51986064726589	-0.136689185916152	0.621163017980935	0.890565198066021
Merged-chr12-52501587-2	chr12	52501087	52502087	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14490.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	4.41734347373758	4.33438258293102	4.56959374840569	5.44951670198775	5.55727198820394	5.21209882866375	2.20570299366382	2.62865037702944e-08	2.17420219256328e-06
Merged-chr10-17796258-4	chr10	17795754	17796754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138628)	promoter-TSS (NM_138628)	35.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	5.07507756547727	4.75275673052934	4.88755433763887	5.06908855282509	4.78509349186687	5.12609535777616	0.172279078468937	0.664448064488263	0.907585158243155
Merged-chr10-19549684-3	chr10	19549173	19550173	+	763.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42276.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.87664076432672	4.79520106652624	5.3235225817753	4.87880784104508	5.04345461813878	5.30028291098436	0.154446498994053	0.70532269593018	0.922756484933722
Merged-chr3-58413633-1	chr3	58413133	58414133	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-1087.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	6.08778517286296	6.2831637611125	6.02794008955035	6.32314390389177	6.27944921316387	5.83700640491266	0.0564520105018679	0.85552336863143	0.966242264237245
Merged-chr17-34356108-4	chr17	34355597	34356597	+	801.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 1 of 8)	MTD|LTR|ERVL-MaLR	1275.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	4.75778843742479	4.6987128244064	4.80502093174805	5.0053707967398	5.06848501590716	4.90834705572427	0.561198108801093	0.141298035856976	0.502077389631641
Merged-chr3-96489239-3	chr3	96488724	96489724	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35961.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	3.71643004066424	3.60734307903886	4.04508594175082	5.87754214342534	6.28377126800564	5.84091160078145	8.30044296579612	4.9622944359771e-12	8.49593817754697e-10
Merged-chr6-54737591-2	chr6	54737091	54738091	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55967.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.23331347332882	3.08991536278044	3.31928424586543	3.20476114212959	3.25979390011264	3.54614842915147	0.508009773765029	0.422427580577918	0.791224431044648
Merged-chr7-98318418-3	chr7	98317929	98318929	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2779.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	3.66639272428302	3.69958858386435	3.55540519105082	3.42276164360724	3.2560476972691	3.46114397843508	-1.00710061472747	0.0851338582856457	0.386252608791229
Merged-chr15-78606694-2	chr15	78606194	78607194	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 4 of 12)	intron (NM_028195, intron 4 of 12)	9647.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.03344845357869	5.38778127207617	5.67040858873182	5.69248300473357	5.21197401331885	5.37494091932495	0.116520828042512	0.764984063108504	0.942108083032718
Merged-chr3-57765185-1	chr3	57764685	57765685	+	567.0	f0_balb.idr	intron (NR_130743, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	29128.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	3.57982131878943	3.49148181816949	3.93715490104056	3.59692296973828	3.46813003887291	3.77653844679335	-0.216560682493183	0.710660811077735	0.924424543407635
Merged-chr5-122900422-4	chr5	122899929	122900929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-79.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	6.87450706259324	5.84138724358695	5.88080294239964	6.30383050897354	5.67853449531794	5.94356820459296	-0.507703939928922	0.22199003289072	0.61686303288709
Merged-chr9-118673493-2	chr9	118672993	118673993	+	808.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	B3A|SINE|B2	-38199.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.30946945790329	7.15870961608326	6.98711885693196	7.29104775252551	7.23311285036711	6.94459310887101	0.0110128620087515	0.965575078099682	0.991995030766812
Merged-chr7-16246154-2	chr7	16245624	16246624	+	931.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007577)	TTS (NM_007577)	-1970.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	4.67778417593642	4.52671121578697	4.94126033283721	4.69400668159735	4.78881120087427	5.16335250882219	0.390924179336259	0.35824246278993	0.744602774931622
Merged-chr15-27624276-1	chr15	27623776	27624776	+	557.0	f1_balb.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	6417.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	4.38945892365122	4.45858612686572	4.01103710594733	3.98277231518969	4.05457484609042	4.31597531375722	-0.537079716828161	0.281309404325525	0.679473799388032
Merged-chr2-166733101-4	chr2	166732607	166733607	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19275.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.96805531590471	3.67067656191893	3.60393229562669	3.91085410074464	3.75858071487109	3.83655366579899	0.227678635496428	0.676510874917643	0.912525597578286
Merged-chr17-31139650-4	chr17	31139136	31140136	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	4646.0	NM_009363	21785.0	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	2.96471094981919	2.72211531162028	3.11939033934692	3.00202435998837	2.8555473192975	3.07846229870687	0.17709001150784	0.803586014592405	0.95351077179348
Merged-chr10-28323214-4	chr10	28322718	28323718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	248398.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	4.76736335778765	4.5276801745486	4.33959766859858	4.22266224341862	4.4735741889201	4.49679915424097	-0.404215454797739	0.37358997739634	0.757529198534216
Merged-chr14-54652761-1	chr14	54652261	54653261	+	910.0	f1_balb.idr	intron (NM_001085473, intron 8 of 18)	intron (NM_001085473, intron 8 of 18)	924.0	NM_001242605	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	4.06357494034642	4.38759748966386	4.36995444621447	4.28932722287352	4.07654842098735	4.704399910893	0.241174491653621	0.630023888116394	0.894514592311047
Merged-chr9-7873785-2	chr9	7873285	7874285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007464)	promoter-TSS (NM_007464)	-615.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	7.43254393414654	7.79011355816466	7.44753435911959	7.61769369856645	8.04552354243142	7.70055333372871	0.339862660136183	0.186822317947861	0.571637546216283
Merged-chr2-72196246-3	chr2	72195611	72196611	+	733.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 7 of 26)	intron (NM_001355478, intron 7 of 26)	-89526.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.59605880155334	2.69223497144069	2.57115178493894	2.94875891835819	2.8168462048249	2.8404275408708	1.31692035660997	0.0799929874944106	0.374082869860896
Merged-chr16-33949666-2	chr16	33949166	33950166	+	856.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010580)	TTS (NM_010580)	17372.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.32005851176662	5.35551458027862	5.56157560996619	5.80583186661207	5.5597787283856	5.28927803917147	0.319550297676621	0.362974283150577	0.748528195305787
Merged-chr10-40881648-2	chr10	40881148	40882148	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	1495.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	4.26889998404362	4.03284070250569	4.52953167594916	4.34332753880782	4.15793134736481	4.21842913963822	-0.112307147793014	0.815934201283268	0.95655688968801
Merged-chr11-98773022-4	chr11	98772538	98773538	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	2339.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	6.62418865316298	6.13374528647809	5.97089250057158	6.3132371409602	6.16360892754343	5.8229185416924	-0.268382421930168	0.43063065166343	0.796424068449484
Merged-chr4-133092344-2	chr4	133091844	133092844	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38289.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.87233921430472	3.9217444199883	4.69982116197363	4.42514250233746	4.34405622467907	4.50856124009969	0.549864475294632	0.311330656616329	0.706465219571547
Merged-chr10-95323583-3	chr10	95323092	95324092	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330138, exon 1 of 3)	5' UTR (NM_001330138, exon 1 of 3)	117.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	8.25303918411953	8.43499857404731	8.24944241303444	8.32921924257525	8.671651929376	8.35459484432688	0.208023127682502	0.352638720167324	0.740194084833795
Merged-chr12-3419590-2	chr12	3419103	3420103	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	MTB|LTR|ERVL-MaLR	7144.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	5.33864145830587	5.68706926662647	5.59659708055185	5.46696236298634	5.76781985472391	6.09911261053976	0.454133424649352	0.203288051398477	0.593161699364046
Merged-chr9-25522000-4	chr9	25521423	25522423	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	40326.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.53072395778367	3.47098874402629	3.63129914997952	3.64860835515548	3.72956374966612	3.64885997360836	0.482923028390264	0.381404972055994	0.763085068523772
Merged-chr4-101154364-2	chr4	101153864	101154864	+	793.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 24 of 24)	B2_Mm2|SINE|B2	85326.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.41729124534118	3.74143786473553	3.66281303149566	3.14502696296087	3.15156368395085	3.58148582388911	-1.19938475737774	0.0626563917103525	0.325539371928505
Merged-chr14-19968475-4	chr14	19967989	19968989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	8204.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.93686976559626	7.06021975096285	6.83296045070237	7.01133931449103	6.95298800536743	6.79922974774947	-0.0360670910389743	0.885081476195283	0.973538624783452
Merged-chr10-83922234-4	chr10	83921726	83922726	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	178471.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.95477350909481	5.88001640024617	5.51778201060533	6.4423944127499	6.6500478982992	6.35392464205173	1.14903856366996	0.000219910621800596	0.00540730585661466
Merged-chr2-60283313-7	chr2	60282786	60283786	+	927.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1198.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	7.59476565375125	7.45389431302446	7.56726157533856	7.59454676179897	7.70259035569276	7.56607689237792	0.12720202300516	0.566878788203774	0.867634455258659
Merged-chr9-21925387-2	chr9	21924887	21925887	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	B1_Mur4|SINE|Alu	1901.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	3.84754139843572	3.70855455224445	3.54957370895847	3.48011610580356	3.66086142029446	3.62107289918506	-0.417848518274128	0.458411329501521	0.812981239724864
Merged-chr8-84973930-2	chr8	84973411	84974411	+	864.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	4289.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	3.45260183983165	3.0520349927393	3.1685105181976	3.35457676312041	3.2618883100945	3.57281866315818	0.622861369327748	0.339613063091207	0.729313720985741
Merged-chr9-21909613-4	chr9	21909137	21910137	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001324531, exon 5 of 5)	3' UTR (NM_001324531, exon 5 of 5)	8546.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	2.67028390493035	2.56443000092928	2.92625252274721	2.58322289225904	2.52071932463553	2.71059036040378	-0.677839113070127	0.383291272670377	0.764716365434363
Merged-chr7-121071269-2	chr7	121070769	121071769	+	801.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	3261.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	4.76902573613104	4.60210430729471	4.98442289657349	4.55737026901582	4.7432005398245	4.91335050365937	-0.101268490755485	0.808073613843669	0.954605755203254
Merged-chr1-86038360-4	chr1	86037840	86038840	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7523.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	4.4234367133304	4.63974167831129	4.44114028973602	4.49781451702472	4.74451764065393	4.59410999778224	0.272412767814045	0.524653268216701	0.848752537154544
Merged-chr12-98265810-4	chr12	98265310	98266310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2825.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.54443708795945	7.47990079039934	7.22883410651402	7.52335122435185	7.77624096325421	7.4576939787573	0.246079853942918	0.314519151146554	0.708849744947754
Merged-chr7-45097684-4	chr7	45097203	45098203	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-5490.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	6.1756886491533	6.41204636545392	6.49533754434984	5.83954502460768	6.00010941924029	6.28697575413511	-0.533329111299961	0.0792279234535387	0.37209443216809
Merged-chr19-45018043-4	chr19	45017526	45018526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-109.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	6.45565703280689	5.4034951928179	5.5232270840863	5.87103901434618	4.84804135945682	4.98316689650363	-1.0206649740692	0.22288086028233	0.617776133760918
Merged-chr10-63024755-3	chr10	63024241	63025241	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	229.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	5.96142215082677	6.2607015356501	6.29627967351826	6.347035576199	6.34666103540423	6.15079628859508	0.190854261481389	0.512178792588577	0.841758142047252
Merged-chr12-75687699-4	chr12	75687193	75688193	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-18156.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	5.74486044155501	6.01374572251703	6.13891042749666	5.62467009581488	5.80819693786651	5.66000036076676	-0.469699499019448	0.141587886753127	0.502269989808757
Merged-chr6-59174181-4	chr6	59173656	59174656	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34714.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	2.08224621274309	2.08755911312818	2.28845073417848	1.96740095264677	2.18943750945796	2.10330740282771	-0.443449944940289	0.632520279932347	1
Merged-chr7-110222556-2	chr7	110222056	110223056	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	853.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	7.03988015123786	7.28756130252685	6.89668038192611	7.25335282076537	7.322289171135	7.05468467778032	0.19199927015678	0.454239103846067	0.810104016757399
Merged-chr10-44698775-1	chr10	44698275	44699275	+	751.0	f0_balb.idr	Intergenic	Intergenic	-240027.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.95758736722351	4.09629347288929	4.36066160671732	4.40200005898792	4.36058754129025	3.89882398965576	0.292330442759327	0.569709891460439	0.868895247713032
Merged-chr19-10033918-2	chr19	10033430	10034430	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 9 of 10)	intron (NR_153790, intron 9 of 10)	-7618.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	2.51958582294294	2.67664546417547	2.55882525185526	2.62104625665686	2.64692595743071	2.87745625488608	0.697852178815313	0.363610842311149	1
Merged-chr14-75148435-3	chr14	75147936	75148936	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	12011.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.52281771387573	5.69883065728099	5.16959016258754	5.58643594807118	5.73430217082333	5.37439142626998	0.164499074399815	0.64833512596121	0.901766609676507
Merged-chr17-80128077-4	chr17	80127581	80128581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	610.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	8.55728188635254	8.80091633567906	8.03446974822745	7.82181424945284	8.14665932714837	7.49314808109535	-0.914697842304552	0.00204849170016566	0.0315299477224167
Merged-chr9-7764789-4	chr9	7764298	7765298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	633.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	7.6324679109138	7.95738313121696	7.22797482110626	7.48416912390434	7.65251650693841	7.47035503605315	-0.159213061865406	0.561484522669286	0.865407801976397
Merged-chr12-100120403-2	chr12	100119903	100120903	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 8 of 9)	B4|SINE|B4	8072.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	2.64504219101928	2.47023895817196	2.66488856554271	2.38093193309455	2.32966231126997	2.79685507096138	-0.46002680966718	0.584778115117851	1
Merged-chr2-28592658-2	chr2	28592158	28593158	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9379.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	4.17307803647327	3.63185125312836	3.70517848838813	3.98909244499781	3.6519301839469	3.98294771753251	0.0425717285167074	0.940929564030897	0.986888338850358
Merged-chr12-3372114-2	chr12	3371614	3372614	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 1 of 7)	intron (NM_008445, intron 1 of 7)	6982.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.06816537675426	3.22045229036595	3.21793753671933	3.28459678114152	3.41719871393103	3.11029704988639	0.474073583733755	0.460938273739541	0.814802506471053
Merged-chr17-31037682-2	chr17	31037182	31038182	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20012.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.57920819151645	5.33346498240945	5.16935248229285	5.14694788531202	4.72473748742915	4.86447155482079	-0.950149819007123	0.0148118291667088	0.131467841688603
Merged-chr12-70713702-4	chr12	70713192	70714192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111822.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	6.62649961808313	6.89342903184917	6.60444278385288	6.44026136692073	6.56288143915004	6.3905247610777	-0.395417789809135	0.143316079950517	0.505355524537813
Merged-chr15-78880386-2	chr15	78879938	78880938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	3248.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	2.75104562587332	2.54241820675516	2.92600172964826	2.85683774514874	2.5650574478557	2.69691197894972	-0.18076094156741	0.815450927458753	0.956370078970016
Merged-chr2-103504267-2	chr2	103503767	103504767	+	994.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19114.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	5.21272576927249	5.43040940628952	5.72280664659963	4.97224937986069	5.19929773097809	5.3643175890169	-0.553491416668795	0.14120438594042	0.501979601184758
Merged-chr19-8818692-4	chr19	8818148	8819148	+	847.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	646.0	NM_027412	70387.0	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	7.12980842985886	7.36803596956242	7.12954181331612	7.08963017528129	7.53379529947925	7.2839377458947	0.154753870471439	0.549795196665574	0.860478862487521
Merged-chr9-107968260-4	chr9	107967786	107968786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011634, intron 10 of 14)	intron (NM_011634, intron 10 of 14)	-7281.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	4.55706666431318	4.573739085779	4.33575181753583	4.94142115073103	4.81073581031138	4.45413806135	0.61488231506328	0.161704814046487	0.534841316980411
Merged-chr6-91688435-2	chr6	91687935	91688935	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	B1F|SINE|Alu	4368.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	3.29284333853431	3.31248901949835	3.31966702385922	3.28898031481346	2.94402410701245	3.49721669316952	-0.206806415134885	0.756231273783665	0.939545863427369
Merged-chr19-53496810-3	chr19	53496306	53497306	+	977.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-32010.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.22015780165233	3.30472607849437	3.06990583847335	2.61389357443316	2.75105015356759	2.83321457093086	-2.49304598358965	0.00162961601300938	0.0263955243701489
Merged-chr7-112299877-3	chr7	112299390	112300390	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	-68418.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	3.47660160553328	3.35546548403169	3.86092869334604	3.02249996175564	2.83995531122622	3.2314719171278	-2.38171219385514	0.00104871269114201	0.0186814998082947
Merged-chr8-26963520-4	chr8	26963020	26964020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13816.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.94314838429408	7.0549461990234	7.27052928213659	6.69395070303747	6.46524042567899	6.19555192800299	-0.95952683756513	0.000714794643685824	0.0138769558357
Merged-chr5-99576053-4	chr5	99575530	99576530	+	881.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	153030.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.84062724993747	4.80888775334723	4.98320743826015	5.03599708024083	5.00084061917986	4.90383600407046	0.245931843893655	0.514529556776211	0.843107848235413
Merged-chr2-144459164-4	chr2	144458670	144459670	+	933.915466	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033459)	promoter-TSS (NR_033459)	-110.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	4.39460775445077	4.97127418525511	4.7402995830899	5.14633255986134	5.15559716294604	4.9970928976604	0.824269314150162	0.0496853275168955	0.283594078238178
Merged-chr14-75179805-4	chr14	75179308	75180308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43383.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.82291471723798	8.15736446868312	7.77606559932053	7.98007128381544	8.34123497038617	7.9162740329108	0.233357913475187	0.35310387754194	0.740466669293519
Merged-chr2-158118747-2	chr2	158118247	158119247	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 12 of 12)	intron (NM_009373, intron 12 of 12)	-26950.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	1.9503645483833	1.95665074069443	2.21668903820699	1.88571452565285	1.82243984675614	1.96553222963124	-1.28901077554781	0.190632046516343	1
Merged-chr4-150605466-1	chr4	150604966	150605966	+	595.0	f1_balb.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46708.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.48729513088101	5.1325381001541	5.40177851351514	5.20062512326625	5.10276440239608	5.37658305764102	-0.249670113764823	0.490231095074531	0.830042606694236
Merged-chr5-101945324-2	chr5	101944824	101945824	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 10 of 66)	intron (NM_172882, intron 10 of 66)	124597.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.77111829720175	3.73000603046327	3.48405088931537	4.07026407058266	4.25780511839606	4.0047489920516	1.38019757028102	0.0115798539379153	0.111503771818022
Merged-chr7-141540859-4	chr7	141540336	141541336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-979.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	6.17634686975783	6.27939142100557	6.62178146502287	6.44697718357262	6.35701095415445	6.48215646818648	0.106000031270867	0.711714671841261	0.92478339732604
Merged-chr17-34143197-4	chr17	34142700	34143700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2216.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	6.15016489272784	5.67753514025967	6.38323253310458	6.65834500929006	6.80496827686519	6.92143701612096	1.14611946723403	0.00027751975084971	0.00652865802338214
Merged-chr3-122984598-4	chr3	122984088	122985088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133857)	promoter-TSS (NM_133857)	-141.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	7.48508055374051	7.41614662942424	7.47202300431377	7.4455092537673	7.35239630018637	7.29107316205348	-0.133892657789301	0.552081336104303	0.861546661145201
Merged-chr9-77686009-3	chr9	77685433	77686433	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49201.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	3.60955703269791	3.49404278811044	3.51953120414306	3.781511008184	3.53371406265398	3.6983008940696	0.448481585307961	0.423736269202628	0.792159956139484
Merged-chr2-34753097-2	chr2	34752597	34753597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	B1_Mm|SINE|Alu	2135.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	5.14129195746717	5.34119592754557	5.04906091899589	5.29142226867905	5.56551048330264	5.38271544579808	0.46238242195026	0.195682362323933	0.58340814806155
Merged-chr17-46140020-4	chr17	46139519	46140519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029338, intron 2 of 4)	intron (NM_029338, intron 2 of 4)	4179.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	3.15436699949649	3.10243320775392	3.3224657182641	3.35502166002477	2.98638705799631	3.33903998931956	0.168604926105978	0.79760160201579	0.951799370596145
Merged-chr19-6335598-2	chr19	6335098	6336098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 2 of 10)	exon (NM_001168488, exon 2 of 10)	559.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	5.01893140484853	5.12397936762949	5.21260185863263	5.05569572754682	4.86190783378413	5.01091926829815	-0.304573633092292	0.410586527849421	0.783472086623278
Merged-chr1-194998417-2	chr1	194997917	194998917	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18982.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	3.98197308109311	3.99211230368016	4.26680935081875	3.82695246411255	3.54747977143965	4.25124105288088	-0.547408247795024	0.333832660897202	0.724614206827878
Merged-chr11-69801097-3	chr11	69800619	69801619	+	854.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010198, intron 1 of 5)	CpG	597.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	2.4792837053698	2.44146758632426	2.4380290088017	2.55335172070467	2.33507532551112	2.81993155526669	0.734227028415583	0.375131802819957	1
Merged-chr19-3935223-4	chr19	3934718	3935718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	32.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	7.58050187758807	7.26413620855815	7.39711000042288	7.44899807010363	7.62702659579216	7.44359312532187	0.135316398001509	0.570748585585975	0.869253690275099
Merged-chr6-113678410-2	chr6	113677910	113678910	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-18640.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	5.42887196056924	5.3025063066873	5.37323999111427	5.41108978701139	5.30703301756222	5.21243279011158	-0.103526723949342	0.761241790226786	0.94117989422274
Merged-chr3-22090037-3	chr3	22089560	22090560	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13408.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.78676101369092	6.13703158909313	5.73038376782727	5.95082751153635	6.16258867817487	5.81994798066926	0.154080698774819	0.633940768592041	0.896247399650521
Merged-chr1-88283497-2	chr1	88282997	88283997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-5918.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	4.07937780255588	4.36828416854044	4.45185811486747	4.0834271171332	4.02151503960615	4.51738026520282	-0.243148451487349	0.626224407373066	0.892823910256439
Merged-chr11-119269261-3	chr11	119268790	119269790	+	952.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	MER21C|LTR|ERVL	1327.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	6.03702184281828	6.32643123741697	6.16209312433111	5.79163018042144	5.72806204781514	5.75421029789132	-0.743767324249771	0.0130664073593172	0.121356136126138
Merged-chr2-160015132-3	chr2	160014628	160015628	+	757.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1525.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.63888806553189	3.49814510637676	3.68330676051495	3.61305466077675	3.63838961905571	3.59555468726886	0.0422944079509273	0.939006470677131	0.986603666382121
Merged-chr5-32742337-4	chr5	32741801	32742801	+	794.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347332, exon 3 of 9)	5' UTR (NM_001347332, exon 3 of 9)	4041.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.49954586437734	3.51651867022624	3.54365859906535	3.71826439230853	3.60657273596169	3.50359131551142	0.343281712687012	0.54081477164635	0.856546234535532
Merged-chr1-156036501-4	chr1	156035997	156036997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-17.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	8.8316504785557	8.90451664728126	8.37739504034323	8.49630220644047	8.84783391927696	8.5361452497334	-0.124399764872683	0.613819699293493	0.887317203673931
Merged-chr17-6078562-2	chr17	6078062	6079062	+	902.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360148, intron 1 of 15)	intron (NM_001360148, intron 1 of 15)	1177.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	3.70687039745545	3.43035488270999	3.62559392696337	3.86076053872056	3.7180255720839	3.69662034818611	0.575903977965885	0.299734889297416	0.696404676197454
Merged-chr11-6444628-4	chr11	6444130	6445130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347064)	promoter-TSS (NM_001347064)	-187.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	6.2916579021398	6.08022742943221	6.09385744861807	6.25109348025285	6.06316824011428	6.04130012857042	-0.0662734026929085	0.819121425807587	0.957209935971094
Merged-chr2-32712363-4	chr2	32711916	32712916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037217)	TTS (NR_037217)	368.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	7.44442568931544	7.52429478281724	7.51902523550296	7.21247572461832	7.38211154908384	7.52746050910055	-0.175267695505866	0.451595176870179	0.809206897170598
Merged-chr12-35021513-4	chr12	35020963	35021963	+	827.55835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25726.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.27244845022516	5.23272277548521	5.11490807962988	3.94478025620149	3.98269174155825	4.04563627676677	-3.20051673490756	3.18098404057479e-11	4.70130230991381e-09
Merged-chr6-54781165-4	chr6	54780667	54781667	+	682.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-35749.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	5.19291866268199	5.2011647922822	5.39054604533596	5.28777392551166	5.61701552609195	5.53881553284281	0.461320630374578	0.184236095170389	0.567869251150334
Merged-chr10-8761373-2	chr10	8760871	8761871	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	B1_Mus1|SINE|Alu	124699.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.10570845367844	7.01472794028184	6.78130082710815	7.33744607984966	7.26532119988681	6.74085306391061	0.257767202793249	0.358533133966078	0.744833720596446
Merged-chr2-165918241-2	chr2	165917741	165918741	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-33403.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.06266761382113	5.82819057995107	5.93829870784701	6.10758595470179	6.7162585581973	5.95063273064253	0.629501352829975	0.0672937907050348	0.339148648227904
Merged-chr19-5604064-4	chr19	5603559	5604559	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362372, intron 10 of 12)	intron (NM_001362372, intron 10 of 12)	2186.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	4.13453318717563	3.88548048143165	4.40129805265718	4.65795682763248	4.73562714706385	5.19333593358526	1.83508930982865	0.000158729164257832	0.00415461978595964
Merged-chr2-167378895-2	chr2	167378383	167379383	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-29705.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.15248145469786	4.3619143716349	4.11525585481341	4.26616629087209	3.95785101024617	3.98400405719768	-0.402320983270397	0.413146337159108	0.784770288990094
Merged-chr3-89279667-4	chr3	89279174	89280174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-29.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	5.37944096838715	5.20543869301577	5.10851903134002	5.18451226750936	4.76557793567978	4.87839042526141	-0.605054279905372	0.116998871207676	0.4567645612395
Merged-chr15-98869733-5	chr15	98869309	98870309	+	789.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	1396.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	4.41683030021808	4.55280147041851	4.83146933169806	4.50398455791878	4.58288588726056	5.14895583951195	0.381363884419992	0.409035455028739	0.782473112145764
Merged-chr5-113908188-4	chr5	113907739	113908739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	CpG	467.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	7.91847180588535	7.84079177300206	7.81850665048182	7.81658818899678	7.6073265670833	7.89881879233255	-0.125054559629362	0.574999021325916	0.87094931637326
Merged-chr3-69163301-4	chr3	69162786	69163786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-int|LTR|ERVL	32053.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	4.96224313365945	4.95351365405894	4.71644052761337	4.60685395130438	4.99572791400453	4.52289851169264	-0.329274086699695	0.44215776590266	0.803105441601984
Merged-chr10-86703208-1	chr10	86702708	86703708	+	557.0	f0_balb.idr	intron (NM_011631, intron 3 of 17)	intron (NM_011631, intron 3 of 17)	2236.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	4.12993164562607	3.80720819337557	3.73797130505735	3.93431993989394	3.63417730273533	3.69937811556734	-0.467803093010972	0.396673126929369	0.773705892751785
Merged-chr7-63941301-2	chr7	63940798	63941798	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2383.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.06369302400406	5.01155911922796	5.2049261272512	5.5429521994335	5.7378680474201	5.75096209053465	1.16160575345151	0.000627390597893279	0.0125490184782461
Merged-chr10-121588120-2	chr10	121587620	121588620	+	578.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081056, exon 25 of 25)	3' UTR (NM_001081056, exon 25 of 25)	-1326.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.14578026256193	5.45779700139419	5.13805965648224	5.93560770793069	6.03192764324221	5.93064603955607	1.30373753045862	9.95409127788301e-05	0.00282393463024238
Merged-chr9-7868208-4	chr9	7867710	7868710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4960.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	7.37510564883084	7.47627161607222	7.36190588312627	7.29973243416135	7.53420729406078	7.28323235698692	-0.0335162413142013	0.886457979661433	0.973794308941933
Merged-chr12-102878520-4	chr12	102878025	102879025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172806)	promoter-TSS (NM_172806)	-119.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	7.71095646531196	7.63713098270068	7.4868735060052	7.70232977414731	7.30330643199455	7.41734489792135	-0.195617071472258	0.42283888618109	0.791567180556068
Merged-chr11-103980376-6	chr11	103979946	103980946	+	810.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	MER77|LTR|ERVL	13575.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	7.74179127314512	7.9016117540643	8.01226746970424	7.57536106037272	8.04028382964718	7.7729128456442	-0.100927994576773	0.680288708582481	0.914210928957366
Merged-chr1-107513656-4	chr1	107513156	107514156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2146.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	4.96277965032551	4.6461142379473	4.5843450285531	4.82465886891145	4.94308672522082	4.31961805463255	-0.026622965728842	0.953869488910423	0.989485151200659
Merged-chr19-6998315-2	chr19	6997815	6998815	+	636.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153795)	TTS (NM_153795)	2184.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	2.42988110585647	2.52179516594341	2.97480735364515	2.80581897040299	2.57615316468118	2.93482911918599	0.607198563866069	0.462535099260387	0.815273593730977
Merged-chr2-133499051-4	chr2	133498539	133499539	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53120.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.42396757114882	4.984885505399	4.90110071251107	4.66488506180334	4.51411945396665	4.60147790430803	-1.21529982985915	0.00358679301130469	0.0480440877148488
Merged-chr3-65820087-3	chr3	65819591	65820591	+	936.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166659, exon 12 of 13)	exon (NM_001166659, exon 12 of 13)	138158.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.92374346601779	3.75915312363105	3.76200925142181	3.772414004014	3.56204034187698	3.9307513448795	-0.212537843930021	0.69562550950769	0.919291538728398
Merged-chr17-50469277-4	chr17	50468792	50469792	+	914.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40255.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.55573931597003	5.77766257954626	5.60344476347327	5.4329025501109	5.79567060092709	5.86938664377176	0.10806362379196	0.746566025497496	0.936300236930265
Merged-chr15-99973206-1	chr15	99972706	99973706	+	1000.0	f0_balb.idr	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	81.0	NR_028124	70281.0	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA	8.38226935040297	8.4063358453211	8.12886608729573	8.04614446545413	8.18443587858023	7.91472983654671	-0.362630067694186	0.103713155029531	0.42934834114604
Merged-chr3-21936835-4	chr3	21936263	21937263	+	751.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139889.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.1683769220224	4.85894918188017	4.93501358630479	5.49778648492476	5.40399638501124	5.1132312138772	0.733791619720514	0.0507724988268583	0.287002587118561
Merged-chr8-41368275-4	chr8	41367777	41368777	+	795.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	6420.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	4.78202209139816	4.58899166012734	4.75635301170189	5.33052224815716	5.31742955589907	5.2195272929802	1.26034916239407	0.000751552359974746	0.0144589985592552
Merged-chr1-173733322-1	chr1	173732822	173733822	+	656.5	f0_balb.idr	intron (NM_001204910, intron 3 of 7)	RLTR44C|LTR|ERVK	8487.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	4.11863330302469	3.69208330855437	4.02704863558944	3.63278572547301	3.45078812001003	4.34407928727968	-0.267513632460955	0.671561038711805	0.910546279207362
Merged-chr4-155199861-2	chr4	155199361	155200361	+	621.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	22674.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.64977809882387	4.50376128870679	4.32321600622926	4.63641051652648	4.42389972845603	4.56889581365172	0.0844599046210414	0.846418173202851	0.964017504522256
Merged-chr16-36749940-2	chr16	36749440	36750440	+	568.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021301)	TTS (NM_021301)	35022.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	5.09133764742368	5.26425504468818	5.01059774939227	5.11510144469603	5.17009791907093	5.30768973031411	0.126078133210476	0.727559183227117	0.930204882969987
Merged-chr11-67052592-4	chr11	67052072	67053072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025510)	promoter-TSS (NM_025510)	46.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	5.98035444235445	5.99394583393382	6.16019689231802	5.85434414513246	5.92059031295731	5.61362062611298	-0.398601627902081	0.194557026111153	0.58191821391117
Merged-chr17-72966259-2	chr17	72965759	72966759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47954.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.62293427696616	3.67172475682607	3.94919279816274	4.03884705866445	3.72652257956642	4.01751122218637	0.579214399678446	0.284534422374296	0.682276040101953
Merged-chr14-27178362-3	chr14	27177853	27178853	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	34360.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.83188390278587	4.66844616432366	4.90473084877783	4.31809070909803	4.06403677371303	4.34476208494729	-1.42756969827873	0.00132142376865732	0.0224119504570808
Merged-chr11-107334338-3	chr11	107333842	107334842	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	136378.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.94594601427729	6.92738095969554	6.67521883144885	6.26843244292001	6.60814722641947	6.4339559809642	-0.649153245386762	0.0179782111461755	0.15063246330188
Merged-chr7-97076752-3	chr7	97076248	97077248	+	903.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5003.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.03657724999657	6.04589046450687	6.30650388397495	6.61231919082875	6.58360956067432	6.46005627376002	0.712669043964323	0.00997003346402723	0.100180302997093
Merged-chr13-17018073-3	chr13	17017564	17018564	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138654, intron 12 of 13)	Lx5b|LINE|L1	676701.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	3.43340010616323	3.26776318590129	3.45018407381206	2.77509414904566	2.71763345324478	3.01711406341082	-2.84980114363929	0.000267354981256114	0.00634695386030205
Merged-chr17-86125976-4	chr17	86125482	86126482	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 7 of 20)	intron (NM_030133, intron 7 of 20)	19193.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	3.16250123344942	3.22484010877717	3.41359628124852	3.19535279884974	3.25006209774484	3.32307721376221	-0.0404564423738069	0.948111085811003	0.988063520994946
Merged-chr5-113872401-4	chr5	113871921	113872921	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	36285.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	4.51242582670161	4.59665533700235	4.2831941186919	4.00814786029305	3.84514848483656	4.26075038546761	-1.22172108074769	0.01231666013717	0.11632417539398
Merged-chr14-65342788-3	chr14	65342284	65343284	+	808.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15892.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.16148364587409	5.27990318027439	5.43404148129279	5.11081207790055	5.19759070433676	5.25870238871045	-0.204205360170839	0.563070266986766	0.865768918165326
Merged-chr1-151338422-4	chr1	151337907	151338907	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6079.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.26012397079048	5.53439310035024	5.51094341265011	5.08655229168226	5.39728876878292	5.5180122508429	-0.186926406957275	0.602168415736813	0.88225227970428
Merged-chr9-96397178-2	chr9	96396678	96397678	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32747.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.28323420371798	4.3920744381061	4.85197378447405	4.82266772752446	4.7137967548802	5.17022889627237	0.905064932685154	0.0462829056043691	0.272176502614853
Merged-chr1-92908011-1	chr1	92907511	92908511	+	554.0	f1_balb.idr	TTS (NR_138577)	TTS (NR_138577)	1022.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	3.55014553693695	3.80473107794327	4.10806950494822	3.79590391310649	4.02846753856756	4.29963875129504	0.660577599910833	0.24038675256113	0.637435893658386
Merged-chr10-80054102-2	chr10	80053602	80054602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037741)	promoter-TSS (NM_001037741)	83.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	8.78645531581434	8.51604928825041	8.52697195043174	8.71694942306547	8.88516330742677	8.51147448666024	0.138618542850467	0.535557933669413	0.853593543745249
Merged-chr2-131244732-2	chr2	131244232	131245232	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206382, intron 6 of 7)	intron (NM_001206382, intron 6 of 7)	10669.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	3.04567574454698	2.70157845933153	2.81713929707383	2.85164052427985	2.89647686528448	2.95189202893436	0.165915895110206	0.817998319670054	0.956835450074313
Merged-chr11-98787538-2	chr11	98787038	98788038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7978.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	5.30308489112065	5.00267158223833	5.13382712979585	5.24791332564724	5.23924083131573	4.86377222361638	-0.0266994900227464	0.944186009273212	0.987590721167621
Merged-chr11-29870390-4	chr11	29869887	29870887	+	881.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	L1M2|LINE|L1	-44719.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.70880443950703	4.73037398715007	4.94483861569176	4.61010585617147	4.56394399099501	4.94122995175586	-0.2036264181548	0.623517588596564	0.891437311201769
Merged-chr19-47459694-1	chr19	47459194	47460194	+	543.0	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	4717.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.20156407217476	3.98280140945098	3.96887847121843	3.83775840045022	3.76837899114966	3.8350532110347	-0.764044642040924	0.133967135677181	0.48936026276074
Merged-chr8-46792868-4	chr8	46792351	46793351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	53106.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.04757741059198	6.53521883693948	6.85227519347462	6.61891845048962	6.9732123044964	6.72863524778024	-0.0624616390444346	0.828148991539723	0.959633697141491
Merged-chr8-41376184-4	chr8	41375704	41376704	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1507.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	5.38610671265579	5.27479622620472	5.44093339343875	6.07739605622686	6.2130213703289	6.26968249970517	1.48907359288699	1.45286810525107e-06	7.52741278342038e-05
Merged-chr10-94553178-3	chr10	94552623	94553623	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	2203.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.2424134704875	4.07909490181301	4.02496520614592	4.12069773792805	4.2394890399606	4.19043409866874	0.176545613031008	0.709614438083033	0.92401439884764
Merged-chr17-64579991-4	chr17	64579511	64580511	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21638.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	3.44451379429918	3.69465055419298	3.52860487534067	3.61967318439627	3.4004268472846	4.03490732998823	0.481297728162729	0.429080924114727	0.795570481157701
Merged-chr11-79214212-4	chr11	79213710	79214710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28814.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.09934727541664	4.89712531196876	4.84321261733442	4.78289216808995	4.67333014752861	4.58200779413155	-0.613578941279957	0.12401317748012	0.471278757298044
Merged-chr11-23727703-4	chr11	23727212	23728212	+	811.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 16 of 17)	intron (NM_001033654, intron 16 of 17)	43258.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	4.71986008862964	4.86224811304893	5.0410087004016	5.02743961734647	4.82122663747147	5.00358425969488	0.167817612712147	0.666990237862627	0.908463623849139
Merged-chr1-58423567-2	chr1	58423072	58424072	+	997.5	f0_balb.idr|f0_c57.idr	intron (NM_001042634, intron 1 of 12)	CpG	516.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	9.41548505391786	9.9552274960044	9.32048549965211	9.18401081400948	9.59982657582479	9.22827258524715	-0.331551591171823	0.202210328690754	0.591924044986784
Merged-chr2-155099641-3	chr2	155099194	155100194	+	649.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040634, intron 1 of 2)	intron (NR_040634, intron 1 of 2)	385.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	4.70508791785861	4.61353953444323	4.93351654412728	5.30998813979721	5.68124277150226	5.33597519152941	1.51113105792635	7.60574775206865e-05	0.00225056564350686
Merged-chr15-100080652-2	chr15	100080152	100081152	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	41988.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.79659401520106	7.11255611411669	6.97283728348289	7.11600804062135	7.33222518226008	7.135943512162	0.355596381850016	0.158516287839533	0.530321210019543
Merged-chr5-125484213-7	chr5	125483670	125484670	+	957.228577	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030210, intron 2 of 17)	B2_Mm1a|SINE|B2	8297.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	3.06788183065049	3.12492678955387	3.47013884634903	3.44577995059235	3.27393053611895	3.59066330824681	0.843752224725736	0.189719570463907	0.575767774402458
Merged-chr7-75642527-4	chr7	75642016	75643016	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186982.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.59094188908813	6.62110103135035	6.20241513528458	5.23175274916036	5.0070749782179	5.31292688377624	-2.39933463297944	3.5478130748106e-13	7.2890476624405e-11
Merged-chr4-95215369-4	chr4	95214872	95215872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-163150.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.61369377125214	6.75970595677353	6.2394283104615	5.98078102202777	5.83737363759285	5.6752982975412	-1.21482460206888	9.21692643364696e-05	0.00265095753436189
Merged-chr2-132600286-4	chr2	132599781	132600781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	2085.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	7.121258914833	7.267453684832	6.67103113452444	6.40702844246416	6.70508445107832	6.60980617791745	-0.732070014250427	0.0112375923652214	0.109210182845753
Merged-chr8-18936405-4	chr8	18935911	18936911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	14460.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	6.70874082944702	6.58055348850349	6.32462130558352	6.11274749284699	6.48630357080263	6.36495776852903	-0.35788621763848	0.219808849624614	0.614227583690932
Merged-chr17-83666774-4	chr17	83666263	83667263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34868.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	6.09240086604887	6.27654928107886	6.09952863817096	5.97744676141262	6.68695641457021	6.36596433403774	0.371603040048985	0.250949115113131	0.64829625167914
Merged-chr16-36631776-4	chr16	36631287	36632287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	34290.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	8.06938352058369	7.96356410682847	7.58480017369559	7.60151272451925	7.99744679485202	7.6316760239076	-0.189369740352127	0.46578728231828	0.817213965217222
Merged-chr12-69924243-3	chr12	69923747	69924747	+	708.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178628, intron 2 of 14)	PB1D10|SINE|Alu	-31084.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	2.67217332797104	2.91625704043657	3.03092084416988	2.57283878471939	2.85047719494561	3.04658307488855	-0.214496286787193	0.782686493109961	0.946664404661584
Merged-chr15-95797368-4	chr15	95796874	95797874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6531.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.77180923732254	6.42359090848507	6.92799998341956	6.59601248810503	6.40819800252673	6.9064106336493	-0.117451468706524	0.69548332869629	0.919289041383579
Merged-chr15-36902028-4	chr15	36901532	36902532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105103.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	2.96617768711172	2.74825111850936	2.99041934870935	3.26353735700415	3.27234379372889	3.29737814279692	1.73564857081925	0.0120391333290096	0.114525232198494
Merged-chr5-86172872-4	chr5	86172355	86173355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172712)	promoter-TSS (NM_172712)	-112.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	7.47588866836863	7.67025142736603	7.22523764535289	7.39095120143398	7.51870970901416	7.23331423616348	-0.126561054874559	0.616194570215104	0.88830918412409
Merged-chr2-27733361-2	chr2	27732861	27733861	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22778.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.99623987062065	6.2066874081722	6.36827203347819	6.16784803556274	6.15449757213496	6.19584760203846	-0.0328680255596073	0.909633541955365	0.979584580182197
Merged-chr7-84680130-2	chr7	84679630	84680630	+	686.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-734.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	4.57063313046992	4.93770976677675	4.88049107482121	5.1410441954859	5.09431880139982	5.39435112389405	0.865845109913779	0.0281404642591654	0.200574931478211
Merged-chr19-46690076-4	chr19	46689568	46690568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025563, exon 1 of 5)	exon (NM_025563, exon 1 of 5)	162.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	5.1281704475568	5.26204494795342	5.14056359940407	5.46754118280223	5.15816398134595	5.0637871753987	0.130597206552199	0.721292718364405	0.928451291671431
Merged-chr10-51530535-3	chr10	51530021	51531021	+	940.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	39623.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	7.31930657550856	7.5948336046631	7.43039308864353	7.48785073250957	7.60523165883882	7.35717902194204	0.0563250132964011	0.81238188088368	0.955565048693374
Merged-chr11-117120404-2	chr11	117119904	117120904	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	5232.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	5.42177921224544	5.63810061020489	5.42362713316089	5.6025714681292	5.47062576711423	5.73416109777928	0.177884650549532	0.592624006393025	0.878142077122388
Merged-chr10-94470886-2	chr10	94470386	94471386	+	853.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-43971.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.08830384583314	7.51238853179786	7.38013847841434	6.97044373086341	7.40964012694473	7.18809595110327	-0.195843751526219	0.466906853879912	0.817696276680413
Merged-chr6-52640334-4	chr6	52639779	52640779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145567)	promoter-TSS (NM_145567)	21.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	5.7211990411161	5.91175481260788	5.521988070397	5.95196702932346	5.95059519499454	5.75771242566412	0.278300688040316	0.383617391461218	0.76494131641868
Merged-chr11-77497736-4	chr11	77497253	77498253	+	877.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	4341.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	3.177906252063	3.19884426989812	3.35626825747484	3.03985928328334	2.73040279229725	3.2107575734327	-1.08350542359154	0.13078650571522	0.483343707197513
Merged-chr3-55353535-6	chr3	55353025	55354025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-108203.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	7.93094446207382	8.22731480560332	7.6423381528304	8.03711874661803	8.45824668513765	7.60827558751769	0.183121555972655	0.543821141043089	0.857551302506722
Merged-chr10-51451743-4	chr10	51451247	51452247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28865.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.21038636530149	7.46285002921388	7.305893396736	7.19148334961482	7.33353972418556	7.0410617956112	-0.193675543020755	0.429489564345521	0.795784671795164
Merged-chr15-6579857-4	chr15	6579362	6580362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	15.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.69140212794316	6.9871651295474	6.90208029785733	6.77588178954932	7.06379744699458	6.90357237406012	0.0907914598373175	0.728160451076683	0.930431591596749
Merged-chr1-153918696-4	chr1	153918197	153919197	+	981.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18768.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.93281489126782	3.86109008085417	4.05781771444651	4.3257523548112	3.86337499511351	4.30426561524772	0.655083202523388	0.203463200652111	0.593428095345515
Merged-chr10-53374369-4	chr10	53373871	53374871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	L2a|LINE|L2	5480.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	5.1176468778422	5.18227191193953	5.38049364267616	5.13673014329235	5.36094628447885	5.29346128712766	0.0960656214384566	0.786992252189286	0.948693859994902
Merged-chr5-140765011-4	chr5	140764514	140765514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	PB1D10|SINE|Alu	40887.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	8.05920752258333	8.17399694089559	8.18899701590091	7.8216251171472	8.2024291354434	7.76313152481391	-0.265439469998874	0.263222180872942	0.661238149505653
Merged-chr12-71831003-4	chr12	71830514	71831514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172464)	promoter-TSS (NM_172464)	-54.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	6.4414152341996	6.78679724078104	6.12153014361739	6.70554694770953	6.83466646479167	6.1833405129775	0.199331436989794	0.552634149672043	0.861817968703681
Merged-chr14-74963428-2	chr14	74962928	74963928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11658.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	4.36203635197757	4.68696663419644	4.0689575379987	4.06045931334602	4.18389948418771	3.92444872834303	-0.921399823498876	0.0734251971470907	0.356055935906237
Merged-chr18-60211379-3	chr18	60210863	60211863	+	684.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-714.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	6.88301061493868	6.9043443935794	7.2919928030008	7.4768091522373	7.65239244975428	7.47559583738822	0.761218712564373	0.0025442597873266	0.0372111845057907
Merged-chr1-149958081-4	chr1	149957663	149958663	+	977.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3127.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.0623462756398	7.26491961250518	6.85904513099271	6.89117100533319	7.10843486167497	6.82551806111307	-0.191525936541257	0.467931592074305	0.818205691164444
Merged-chr1-132332992-4	chr1	132332489	132333489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028778, exon 7 of 7)	3' UTR (NM_028778, exon 7 of 7)	16864.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	5.20007325639248	5.30863277492966	5.53912134059373	5.50408368962592	5.63937921487642	5.75569443576536	0.549934380294346	0.104271784314205	0.430753978215487
Merged-chr1-144316719-3	chr1	144316198	144317198	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67594.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.91348687843336	5.98115571458085	6.11878456904702	5.56563549239813	5.62705110913214	5.77069193806109	-0.627931422897814	0.0407301809158969	0.251695276171552
Merged-chr4-149790843-4	chr4	149790359	149791359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-16592.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	8.05581812938954	7.50321096831765	7.6395790813598	7.84786638968427	7.78232208813952	7.62992050778735	-0.000533398388426662	0.998342238318651	0.999627693601982
Merged-chr15-90322876-4	chr15	90322345	90323345	+	873.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30865.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.9682703195011	5.00665539926838	5.1079969669154	5.00841973061072	4.68231901885613	4.73561792800611	-0.461105680482819	0.237877469381041	0.634421246586675
Merged-chr3-103206595-4	chr3	103206086	103207086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34931.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	6.72198643436286	6.54541800515581	6.45181264777819	6.76156862569924	6.98684596310249	6.67170428677424	0.374853424717991	0.163361944667057	0.537179588247402
Merged-chr10-88578804-4	chr10	88578318	88579318	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	26334.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	5.90848468422951	6.10363384718019	5.62567499850613	6.18854213775497	6.37703642379228	5.88556472895561	0.465523341338172	0.157808819099464	0.529367313833026
Merged-chr11-102435814-2	chr11	102435314	102436314	+	681.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 11 of 13)	exon (NM_008175, exon 11 of 13)	5492.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	2.17418673779575	2.2916714081607	2.34558045738819	2.35075189389121	2.24917214668244	2.5452258483507	0.737225610692335	0.387606375062055	1
Merged-chr2-90483969-1	chr2	90483469	90484469	+	942.0	f1_balb.idr	intron (NM_008982, intron 1 of 23)	RLTR11C_MM|LTR|ERVK	-4795.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.46376321769237	4.41729333282557	4.1863551747129	4.80670816096189	4.72959853400045	5.21146234457066	1.31072977931754	0.00368520249054419	0.048944665416313
Merged-chr11-8443822-4	chr11	8443319	8444319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 27 of 30)	intron (NM_001083587, intron 27 of 30)	220716.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.93315965782934	3.60362625600923	4.10560562315699	3.51144909510787	3.42514069535849	3.60215126575493	-1.30333989713754	0.024873379120022	0.186483420222405
Merged-chr9-108566954-4	chr9	108566454	108567454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023247, exon 1 of 5)	5' UTR (NM_023247, exon 1 of 5)	388.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	7.955299974305	8.22756418196561	8.32712755749489	7.92434105620394	8.15777698948567	8.2583453406897	-0.08045708644946	0.731095455460422	0.931307266655708
Merged-chr16-3892988-4	chr16	3892506	3893506	+	732.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	8387.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	5.01168474145404	5.18705221173139	5.35847415668769	4.91227116732519	5.11117912339907	5.630513142861	0.113263124706318	0.78021076352418	0.945966807104547
Merged-chr7-141455405-1	chr7	141454905	141455905	+	1000.0	f0_c57.idr	exon (NM_001163689, exon 1 of 9)	exon (NM_001163689, exon 1 of 9)	217.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	8.15161631377897	8.20923757503954	8.19026709480015	8.12759829142023	8.43620734013343	8.12474752788002	0.0848655770357505	0.699044711263586	0.920515737149593
Merged-chr10-7992797-4	chr10	7992287	7993287	+	939.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36664.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.35186261252425	3.23951916254233	3.2672766528488	3.37020840855091	3.1225076482308	3.33904072076904	-0.0451872771716191	0.942074255438826	0.987097394617189
Merged-chr7-141010657-3	chr7	141010158	141011158	+	908.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	86.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	6.18475161962777	6.22992270302899	6.40092435865179	6.34575470307219	6.37819588124724	6.51308708824991	0.234051919991485	0.393489553632732	0.771604147212602
Merged-chr10-117953112-4	chr10	117952608	117953608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27649.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.88174095913323	6.62894128192411	6.55312153240818	6.99806222715189	7.0750684592886	6.68277413199447	0.367539727680822	0.178809195050706	0.560136868525682
Merged-chr7-25395289-4	chr7	25394790	25395790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	577.0	NR_015569	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	7.22239942695469	7.40878363538417	7.43998772647764	7.51950739686771	7.55611937721818	7.45574690587292	0.229531712022463	0.315555791870155	0.709834518424648
Merged-chr11-53312892-2	chr11	53312392	53313392	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11797.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	2.58525919760576	2.44584468116272	2.7054123842147	2.5301957001989	2.60623886746131	2.71796547356612	0.223439544760528	0.772928996604348	1
Merged-chr4-136148059-1	chr4	136147559	136148559	+	1000.0	f0_balb.idr	Intergenic	CpG	4237.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.54634922554744	7.0366442677735	6.85432402344573	7.45255393761778	6.9916508508993	7.03038954041763	-0.0176749712931388	0.953800975626917	0.989446911725587
Merged-chr6-51525313-4	chr6	51524811	51525811	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	1051.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.95997431098047	6.11524455515768	5.87313932833981	6.03650868202752	6.13495625051301	6.26431968097777	0.258429263038526	0.379601835912122	0.761987589563251
Merged-chr2-156194352-2	chr2	156193852	156194852	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2295.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	3.27475215881714	2.91600174716998	3.32410345129778	3.15780990668037	3.32090820743548	3.2848556044019	0.316850509171741	0.63403843615261	0.896247399650521
Merged-chr14-44102041-2	chr14	44101541	44102541	+	907.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012766)	promoter-TSS (NM_001012766)	-613.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	4.97102415224346	5.35080120936156	5.27120602787849	4.96687421685102	5.07623793654672	5.27314478008556	-0.210520674361452	0.576503878770245	0.871585692229598
Merged-chr8-4134608-1	chr8	4134108	4135108	+	930.0	f1_balb.idr	promoter-TSS (NM_027343)	promoter-TSS (NM_027343)	-128.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	2.87176931145531	2.99619835845631	2.89939755135388	2.66039078778658	2.39589182541231	2.72683831711467	-1.8954974097643	0.0221305112888693	0.172693949481781
Merged-chr7-100433009-2	chr7	100432500	100433500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-39991.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.98935158476005	5.20448982388521	5.32134237197518	4.95738394031981	5.04438300279088	4.99589282624572	-0.358038769697871	0.334811682407168	0.725198429760335
Merged-chr11-49202808-4	chr11	49202289	49203289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-711.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	8.38457832047859	8.5064845163841	8.23031204670812	8.41831533125047	8.71779513828551	8.29235194099868	0.157005987042983	0.496617101800284	0.833150692063167
Merged-chr8-46470859-4	chr8	46470357	46471357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-180.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	6.91189107991857	6.88297223786303	6.79735029711644	6.6913549336791	6.63942263553094	6.64967909550362	-0.32635841163371	0.188100377091532	0.57352205966475
Merged-chr11-48859223-4	chr11	48858703	48859703	+	745.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12217.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	3.24570121734879	2.96827189666416	3.15180095756478	2.95475516801676	2.91176941137726	3.16676232807584	-0.526718444580143	0.437864338441872	0.800299836401105
Merged-chr2-129570919-4	chr2	129570399	129571399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21940.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.02951081994613	4.56284636493635	4.89650895214498	5.45536910777115	5.70332524028116	5.37650879344497	1.4036826032476	0.000291254785317838	0.00679986761412085
Merged-chr7-141269893-2	chr7	141269393	141270393	+	651.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028069, exon 13 of 14)	exon (NM_028069, exon 13 of 14)	-3469.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	6.15319623990039	5.96030687511488	6.24190519943665	6.32755012552295	6.23251251946634	6.5027799944706	0.392408109224225	0.173415087688137	0.552220536408516
Merged-chr1-178350983-4	chr1	178350495	178351495	+	960.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13180.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	3.53062293115125	3.68594823342123	3.46481238379873	3.49540176723934	3.63799446510342	3.84747604244727	0.326054091320239	0.569430094214459	0.8688875602138
Merged-chr2-83722061-4	chr2	83721553	83722553	+	893.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2344.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.57141574454107	4.78869516077753	4.76441038923479	4.664658038048	4.92602933162475	4.75306365833152	0.192530484611833	0.635927980756192	0.896837264160966
Merged-chr17-35915755-4	chr17	35915253	35916253	+	837.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361455, intron 1 of 5)	intron (NM_001361455, intron 1 of 5)	687.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	6.93627841816436	6.83408340507155	6.92961267060286	7.07359614057526	7.34524568329254	6.87096305477477	0.341162445279437	0.192218121634696	0.57920205203809
Merged-chr3-8999445-2	chr3	8998943	8999943	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	4761.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.64364563723988	4.63593131439453	4.98851109176179	4.6980610223628	4.53458471126595	4.48731719584167	-0.420323095695979	0.321910734279602	0.715330441392366
Merged-chr4-109564760-3	chr4	109564238	109565238	+	734.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33441.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	3.29771417086364	3.18231225408215	3.54989351310027	3.2714474738957	3.22704339453713	3.66752867598554	0.192590438030321	0.76351070137025	0.941793063578371
Merged-chr5-77266805-2	chr5	77266305	77267305	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	CpG	1311.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	6.62964058312322	6.85809447723938	6.94628887139104	6.90387213395042	6.70783461068024	6.69454046917106	-0.0620721588344307	0.812927008074113	0.955841430155734
Merged-chr2-79228190-4	chr2	79227700	79228700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27226.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	6.13291243816704	5.64465681384067	5.96992260777159	5.90400777508493	5.94484311020243	6.18039688473473	0.136522531034716	0.67230878450256	0.910757685897613
Merged-chr12-78792635-4	chr12	78792138	78793138	+	757.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	MTD|LTR|ERVL-MaLR	43691.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	3.72992057186538	4.24141776354165	4.1074173512225	3.98678278520705	3.98224711816525	3.93504896970026	-0.224157152041115	0.669553984596517	0.909692012644768
Merged-chr13-49203978-2	chr13	49203478	49204478	+	981.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026738, exon 4 of 6)	exon (NM_026738, exon 4 of 6)	12048.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	4.23313001537918	3.76379182447257	3.73818832802685	4.01663010521217	3.88380295640651	3.75468074196263	-0.146005118499856	0.791976723746792	0.949839887482488
Merged-chr4-75400952-4	chr4	75400454	75401454	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44A|LTR|ERVK	-122662.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.9993534139013	5.79861116313349	5.02454099779397	5.30491807482569	5.37860562062802	5.42766271405384	0.0467603807419197	0.911153175621878	0.980026994912141
Merged-chr11-114680961-4	chr11	114680494	114681494	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5526.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.5537347971756	6.25248745145399	6.58690259290634	6.48040988954009	6.45198880353528	6.21449915660715	-0.117903118738407	0.678897003450447	0.913553914280182
Merged-chr5-140704902-4	chr5	140704407	140705407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-104.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	6.54330647250461	6.64214256809223	6.97107585953842	6.8564315131089	6.91331008726538	6.59276626525637	0.126113665642825	0.64949310597662	0.902169249503915
Merged-chr3-59210931-4	chr3	59210410	59211410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028808)	promoter-TSS (NM_028808)	-28.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.42396968983325	7.22742002118511	7.03241805281863	7.30407790487138	7.5963692810718	7.31682487753504	0.257606153999845	0.311542295924247	0.706536150429674
Merged-chr5-36726583-4	chr5	36726068	36727068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22111.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	7.64232467767051	7.57790231089257	7.35754352047098	7.72028414855699	7.74028526643038	7.36906343335646	0.132642565043907	0.587969443980412	0.876182349656829
Merged-chr13-119408347-2	chr13	119407847	119408847	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	664.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.93316502055451	4.01286518873383	4.24190414908053	4.14586895737035	4.2185654046048	4.58652498037249	0.723546583906946	0.142050464583591	0.503160148868563
Merged-chr15-96639815-2	chr15	96639315	96640315	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	2147.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.58190133747403	5.36088757162803	5.22190598365688	5.35013605040917	5.57903971799757	5.38470244693607	0.0842305525040846	0.809334408921261	0.954721853010197
Merged-chr10-57743835-4	chr10	57743329	57744329	+	945.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41094.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.34098597902389	5.36369843079292	5.7136341578726	5.48449817821265	5.47116273486185	5.79865528313286	0.212488302031165	0.541417432031609	0.85683609213704
Merged-chr8-26965327-2	chr8	26964827	26965827	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12009.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	3.17895049515061	3.59994013893159	3.68671343012301	3.35924174185974	3.45084581022584	3.27194182679296	-0.512692329466154	0.421508173665527	0.790374132154618
Merged-chr4-95106163-4	chr4	95105665	95106665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53943.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.63608618255814	4.57703785401022	3.96634275301419	4.13283139352705	3.92017609556037	4.09235112192147	-1.06021511996039	0.0404898159198708	0.250749970457026
Merged-chr14-24486149-2	chr14	24485649	24486649	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081247, intron 1 of 30)	intron (NM_001081247, intron 1 of 30)	909.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	3.51761209295024	3.35451070277848	3.36461164935187	3.49810192767105	3.37411897448204	3.32020803861437	-0.0589660429428016	0.92113923033782	0.982526400261012
Merged-chr11-120630641-4	chr11	120630140	120631140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2907.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	7.60975445903877	7.78345044212891	7.81858269030248	7.53643107243516	8.01059053056988	7.54049741010621	-0.0185335291869908	0.941880937268508	0.987067319874248
Merged-chr4-134688545-2	chr4	134688045	134689045	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	RMER4B|LTR|ERVK	15745.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	4.62108152394261	4.80168038350098	4.68678877028496	4.23553930624354	4.21296037435993	4.78859230647175	-0.688664752058332	0.136757350334968	0.49404357255555
Merged-chr14-75069662-6	chr14	75069158	75070158	+	890.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	53631.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.49971606221787	5.51929646209746	5.80408934701758	5.75541721372283	5.71393073400849	5.68893407674014	0.216327913884348	0.499430752947452	0.834486707618126
Merged-chr2-163713399-4	chr2	163712887	163713887	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	19350.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.55316890319002	5.85360874437444	5.83423376347642	5.64976803740346	5.6386784437383	5.82297447640591	-0.0937305452953693	0.770020412404678	0.943310056383255
Merged-chr3-95295856-2	chr3	95295356	95296356	+	590.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023628)	TTS (NM_023628)	10948.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	3.40633521359929	3.01115351226811	3.35233676604134	3.18580760801763	3.28464909234846	3.25578787369376	-0.0932027084974613	0.885940901347507	0.973636976161493
Merged-chr10-60830908-2	chr10	60830408	60831408	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029770, intron 1 of 16)	CpG	673.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	3.12730727419363	3.01473331895839	3.05441744485243	3.18842855198338	2.81056008491808	3.35111482665246	0.280295310636856	0.690395277376731	0.917823389001164
Merged-chr11-88204342-4	chr11	88203842	88204842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-46.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	7.80803697900862	8.0476375627788	7.87391981125889	7.934425544227	8.04493590404641	7.63943528242602	-0.0337147982013969	0.88652338645246	0.973794308941933
Merged-chr4-43452457-2	chr4	43451957	43452957	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007654, exon 5 of 9)	exon (NM_007654, exon 5 of 9)	2169.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	4.371563729314	4.33232150304845	4.39284350399414	3.87812261394031	4.03170668827638	4.00318510439873	-1.10330212627363	0.0209443355786888	0.166480392267891
Merged-chr16-87688250-2	chr16	87687750	87688750	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10704.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.85144022648341	4.69141024221262	4.41451760970023	4.47320778493187	4.42288158623853	4.24258295194053	-0.70322019670447	0.116382085397381	0.455533612183759
Merged-chr2-128710142-2	chr2	128709643	128710643	+	806.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	11228.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.00260717415086	6.68430290165062	7.0590102472895	6.80983502306488	6.82018719415457	6.56560659973436	-0.272892229516291	0.311808789276694	0.706723622367304
Merged-chr1-138244116-4	chr1	138243630	138244630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29608.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.74993579170528	5.35294653768191	5.73009670250259	5.83981767794335	5.62420225527013	5.97998736800351	0.356541627459677	0.29262707380145	0.689849199032898
Merged-chr18-69595930-4	chr18	69595423	69596423	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249763.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.04393072134199	6.13861763002668	6.0580728495059	5.80396452618587	5.72631228630852	5.73061060742374	-0.578933784684293	0.0495055978498121	0.282877474652325
Merged-chr8-11462301-4	chr8	11461876	11462876	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-15553.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	7.25426917365623	7.32905485598621	7.47006825430388	7.39744673916006	7.04724940817241	7.07041629998891	-0.249470460741449	0.318362229989856	0.712161852649298
Merged-chr6-67267569-3	chr6	67267060	67268060	+	991.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113565, intron 1 of 7)	CpG	581.0	NM_025814	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	6.66293660997324	6.99371829880334	6.96370290525854	7.06505331462321	6.74708752291234	7.00840604102032	0.0959280173968375	0.719903631773755	0.927961045244618
Merged-chr10-68193056-3	chr10	68192478	68193478	+	981.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	85748.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.97862904889048	6.00810685740153	5.9394353568023	4.63951594552835	4.507835774694	4.4607636724444	-3.02065171930745	9.98754635691847e-15	2.65509187625071e-12
Merged-chr4-46137987-1	chr4	46137487	46138487	+	550.0	f0_balb.idr	promoter-TSS (NM_001033201)	promoter-TSS (NM_001033201)	488.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	6.0504482971478	6.45028477365652	6.42765125972784	6.40718521437183	6.39824565068457	6.19217400244234	0.0379343445004289	0.897323673596766	0.975981127717441
Merged-chr4-133814191-4	chr4	133813684	133814684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	60547.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.30191994378362	8.12943765830408	8.19918663038887	8.33025658557513	8.26019691543731	8.19594553416526	0.0733814636402886	0.72325634625069	0.929000340406704
Merged-chr14-70815858-4	chr14	70815353	70816353	+	787.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37080.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.89605751014255	3.86535605649536	3.99904766897228	3.77902915654151	3.71422628301124	3.82577044886263	-0.474005201496881	0.357470706479822	0.744062225368359
Merged-chr1-65176369-3	chr1	65175825	65176825	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	RMER15|LTR|ERVL	2817.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	5.89203643760671	6.21776192991699	5.99774016505416	5.96927594147199	5.82565515685687	5.94201563251297	-0.239547594182642	0.4295336896374	0.795784671795164
Merged-chr16-59559742-4	chr16	59559224	59560224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3972.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	6.42904984375667	6.70988581214755	6.41567564071669	6.78227087280851	7.19479301999314	6.94852748971282	0.718322901694901	0.00982193739788893	0.0992306662218968
Merged-chr13-99029054-4	chr13	99028554	99029554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44489.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	4.22789442838932	3.99825810955235	4.36250027144879	4.03691238899074	4.09575545896815	4.02565441118736	-0.402229222473428	0.409828734273314	0.783037226945994
Merged-chr15-101317623-2	chr15	101317123	101318123	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24411.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	3.08989019903088	2.91589515869744	3.04173789875114	3.15937087645964	2.56754363515783	3.22840765512738	0.025233968897184	0.974982630872837	0.994418776221458
Merged-chr14-30591666-6	chr14	30591229	30592229	+	897.8110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18581.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.39971066193927	3.67260093178207	3.90017967590752	4.52534966258349	4.39540590102254	4.36712252347665	1.06191803432316	0.0533460158723227	0.296062738387025
Merged-chr7-19667640-4	chr7	19667136	19668136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2606.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	5.56712459426225	5.42633832910503	5.71993390502385	5.67994039309002	5.67153067066156	5.7814100818923	0.26128470038888	0.414952308550414	0.786115461363139
Merged-chr4-99191866-4	chr4	99191409	99192409	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2025.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.42953714742771	6.89952182382359	6.83779312799094	7.1327760770791	7.2347297248228	6.67342619445582	0.474043062109671	0.110853476025916	0.444841551070303
Merged-chr12-98266353-4	chr12	98265845	98266845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2290.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.84405900023682	7.86514404404874	7.53094965561343	7.68475115158642	8.03720113427292	7.60699119921712	0.0542185784358232	0.829505609808231	0.960114979147503
Merged-chr5-137820909-4	chr5	137820384	137821384	+	799.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360023, intron 16 of 16)	Lx8b|LINE|L1	15394.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	3.44963815431821	3.5057988165068	3.93346475396102	3.73445473047319	3.37973911690876	3.76865664967624	-0.0192440352859474	0.974603262524875	0.994296985713596
Merged-chr4-58546829-1	chr4	58546329	58547329	+	625.0	f0_c57.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	6464.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.07121974953992	4.08260674972921	4.22732197863641	4.96932912227466	4.92076531723745	4.9505591537759	2.08060916481035	1.64549871685981e-06	8.35889238293474e-05
Merged-chr4-123343392-1	chr4	123342892	123343892	+	673.5	f0_balb.idr	promoter-TSS (NM_001256019)	promoter-TSS (NM_001256019)	-140.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	2.74271918578231	2.5695601791574	2.88392453827124	2.68518930870272	2.43026294922595	2.71881543692688	-0.667364150887734	0.397852690547858	0.77461044703901
Merged-chr8-25083321-4	chr8	25082825	25083825	+	871.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	18486.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	3.39883376714095	3.6545893004915	3.90475951224709	3.60200081867464	3.54729296111402	3.46705607644041	-0.417847204310455	0.478921785633365	0.823933881609538
Merged-chr1-125430254-2	chr1	125429754	125430754	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	ID_B1|SINE|B4	5473.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.32152925376474	5.29323762367704	5.47993305210636	5.34364456719035	5.69988576457787	5.77686657143469	0.492125858536914	0.153414962921278	0.522338393389739
Merged-chr1-121430435-2	chr1	121429878	121430878	+	972.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	-689.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	4.41629517680972	4.9342147688644	5.09247544755993	5.36265768010081	5.1433128362938	5.39964766882553	0.977898916581439	0.0199089233332092	0.160942552483209
Merged-chr4-126405264-4	chr4	126404756	126405756	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 3 of 18)	intron (NM_153402, intron 3 of 18)	24286.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.75785986121337	4.64364103838717	4.64823225695296	4.50613868299296	4.61304745393239	4.54985457452512	-0.302692881688435	0.461125566879709	0.81491241544743
Merged-chr14-33400184-4	chr14	33399681	33400681	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310452, intron 4 of 10)	MLT1C|LTR|ERVL-MaLR	10843.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	4.323113640279	4.07917079682119	4.09827566215292	4.32253292898942	4.3194292916784	3.9613076209935	0.12689954336183	0.796038865097122	0.951396269938008
Merged-chr4-35100536-3	chr4	35100004	35101004	+	922.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-51551.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.86685432429599	4.82014428900375	4.66270310956734	4.57655875388158	4.19962565499471	4.72895526772267	-0.679925879569626	0.124639845529064	0.472306664538883
Merged-chr2-163719424-4	chr2	163718924	163719924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25387.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	3.6539141290326	3.46427549079843	3.51382221162137	3.34988836695236	3.3905476653221	3.78241956435415	-0.123512253061019	0.836803680271125	0.962001762335242
Merged-chr8-14884520-4	chr8	14884017	14885017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4019.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.38433220140113	4.38595653065864	4.60145817304125	4.96144293979556	4.82153293282849	4.49741120304188	0.790336439077686	0.0669435720308543	0.338143673984297
Merged-chr12-3236459-3	chr12	3235952	3236952	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	661.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	7.68729464551783	7.9044374045976	7.44065637971218	8.01249235654455	8.31950845402692	7.51959070587943	0.434683212071781	0.133342241601635	0.488442392114254
Merged-chr4-97778482-6	chr4	97778003	97779003	+	954.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 1 of 10)	CpG	877.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.58582754462217	4.8480110583168	5.12073178092766	5.21668715359504	4.83346676405865	5.04587157540054	-0.391036688530551	0.356388969866667	0.743237008563263
Merged-chr3-84259421-2	chr3	84258921	84259921	+	585.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001271727, exon 1 of 12)	5' UTR (NM_001271727, exon 1 of 12)	358.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	4.37292155816422	4.30838211198003	4.04282812292312	3.65514188350272	3.51667862090448	3.91331675932894	-1.77424867453516	0.00107654767381851	0.0190793139175911
Merged-chr10-81295887-2	chr10	81295387	81296387	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	2924.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	3.46529043639892	3.53159548290723	3.71130353720983	3.50726091556084	3.30976866751794	3.57859321793981	-0.384493064813341	0.510924245620144	0.841230434419772
Merged-chr15-79446408-4	chr15	79445890	79446890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4247.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	6.86288221557447	6.52443226563152	6.59755686340984	6.97479927482908	6.64044113247911	7.08927798855108	0.364600098311833	0.198226598666505	0.586478383096365
Merged-chr15-82906192-4	chr15	82905694	82906694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045068)	TTS (NR_045068)	5940.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	4.59510067565248	3.89438968711901	4.17816186372095	4.20516028988352	4.36353316393703	4.15084757788404	-0.0387008803707712	0.940885456252975	0.986888338850358
Merged-chr11-114684751-4	chr11	114684251	114685251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	9283.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.91670371367071	6.3995875459672	6.63575023499427	6.85911043248336	6.81799864117155	6.36055608764809	0.0586676953881397	0.84710567484065	0.96415075979756
Merged-chr3-60541260-4	chr3	60540751	60541751	+	925.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	40072.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.9547343053211	3.96754853580083	3.84688564408958	4.09628447333641	4.21524871199992	3.75220876355446	0.355418187454359	0.49713308494815	0.833443136129225
Merged-chr10-4612082-3	chr10	4611597	4612597	+	955.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126357, exon 1 of 8)	non-coding (NR_126357, exon 1 of 8)	108.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	6.24632385648893	6.39254523441048	6.05058226895982	6.01231717845911	5.96833642839949	5.57598058390115	-0.626592735637071	0.048162146455188	0.27823896981485
Merged-chr9-110654157-4	chr9	110653664	110654664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-3.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	7.33166657295511	7.04266033416845	7.13622815668014	7.26931726447325	7.24477822953714	6.99459607768564	0.00669843051012522	0.978620868994294	0.995160277495735
Merged-chr4-132824164-4	chr4	132823669	132824669	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18965.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	3.2008954007989	2.8979503494447	3.30648549058448	3.37556077009827	3.15281940868089	3.20866917849997	0.447146420764442	0.504011550812767	0.837420592739604
Merged-chr16-57548116-3	chr16	57547602	57548602	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1140.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.67703343642027	6.66056570189708	6.72554376201469	6.64140039792049	6.52846304898234	6.69029978489391	-0.110423052071446	0.664344194370668	0.907585158243155
Merged-chr11-94340395-2	chr11	94339880	94340880	+	666.166626	f0_balb.idr|f0_c57.idr	TTS (NM_146024)	TTS (NM_146024)	12379.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	3.09491237871995	2.81092855121017	2.9299562334922	2.94421521583759	2.78949629997181	3.06182512170754	-0.0973508098282972	0.890492014802227	0.974528422443459
Merged-chr3-94814523-3	chr3	94814016	94815016	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23051.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	4.41441836088831	4.51181774229044	4.61443844542876	4.0590950912951	4.02583364225416	4.36049403124061	-0.984256806386045	0.0341901686022721	0.226270225805922
Merged-chr5-143488810-2	chr5	143488310	143489310	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	24317.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	5.2668538067045	5.52282287977581	5.56885758395232	5.6931740921714	5.46655894500395	5.45971915628389	0.172582614163909	0.611139450838308	0.885964273835809
Merged-chr11-46775444-3	chr11	46775002	46776002	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134248, exon 7 of 8)	exon (NM_134248, exon 7 of 8)	24334.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	3.95487481828713	4.10509152322418	4.09044752584197	4.03612506351284	3.68107723451112	3.96896054130196	-0.465077995888674	0.367126658710205	0.752113401392775
Merged-chr17-80498233-2	chr17	80497733	80498733	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17780.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	2.74593879789275	2.9108965670775	2.97281926620463	2.94096319995928	3.15777281912658	3.216035469616	1.08752954523473	0.11915732869522	0.461541895823103
Merged-chr8-116992137-2	chr8	116991637	116992637	+	702.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	MIRb|SINE|MIR	1312.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	3.38489517159804	3.11512795282188	3.27649941048893	3.24824771869388	3.20003052314098	3.11255358952199	-0.302662326641611	0.635203942521872	0.896439353901449
Merged-chr17-27028602-4	chr17	27028099	27029099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	28.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	7.25461025058196	7.70018510699182	7.1902013375667	7.35365291088079	7.74517199545835	7.3204088675944	0.125660153918294	0.651977436341153	0.902896807825606
Merged-chr6-43266610-4	chr6	43266100	43267100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133674, intron 1 of 14)	intron (NM_133674, intron 1 of 14)	956.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	5.00483047200743	4.99402047930426	4.70761968539304	4.74848116186132	4.76007742096978	4.85316080129296	-0.30235057518674	0.442495748176429	0.803210868548523
Merged-chr8-71670723-4	chr8	71670206	71671206	+	901.715942	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	1051.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	3.49643172487844	3.2674642286276	3.63664385824807	3.66140924253633	3.33467663905657	3.49648685144441	0.118204660202422	0.845281746489828	0.963765935544047
Merged-chr11-118981167-4	chr11	118980589	118981589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7092.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	5.0011126638312	4.56693617835624	4.51653427883603	4.36480730522733	4.48217524816349	4.30915931449437	-0.801606688202953	0.0774144833446005	0.367016371154779
Merged-chr3-27268964-4	chr3	27268435	27269435	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-48142.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.2366109416705	3.7893803764394	3.93935795812661	4.45518124462331	4.04827435766523	4.15993664485127	0.637092555106206	0.22242582034131	0.617394127326327
Merged-chr9-25158444-1	chr9	25157944	25158944	+	766.0	f0_balb.idr	Intergenic	L2c|LINE|L2	-6663.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	3.51589039451526	3.60075280545715	3.95488294853906	3.40763852834128	3.4501069321106	3.36846161784091	-1.02221302040003	0.0879623879116139	0.393525155833624
Merged-chr11-5763008-2	chr11	5762508	5763508	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	-632.0	NM_001361589	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	5.95450884569675	6.13589615102004	5.85022329341356	5.67394520433129	5.95283991649061	5.5829355483206	-0.409927137062437	0.202871890815412	0.592772302593993
Merged-chr10-80679751-3	chr10	80679247	80680247	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3454.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	7.21362997383256	7.43118136775521	7.18175565096672	7.45839689995687	7.58316861942463	6.92087816351846	0.118127276847917	0.671665064660109	0.910573176861295
Merged-chr3-75296470-2	chr3	75295970	75296970	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26392.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	4.0051197649516	3.9311337495948	3.95765397819904	4.04086397397612	4.27710122627732	4.58309038548706	0.974521913786594	0.0512346804761499	0.288498023486464
Merged-chr1-138237440-4	chr1	138236952	138237952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-36286.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.0533894644984	3.95444336280926	4.00650498698896	4.05738856785617	4.03488209180579	4.21375577177272	0.272717831709914	0.572951782261413	0.869934493236159
Merged-chr13-105047110-2	chr13	105046610	105047610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7820.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	3.59431247071965	3.13746596148717	3.50505870263959	3.21788504970367	2.77052717695109	2.86215976746322	-2.040589301307	0.00828038078169382	0.0881871111916308
Merged-chr6-113677571-4	chr6	113677069	113678069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-19481.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	6.61236337716512	6.4424443809407	6.41571115372501	6.30263752843321	6.27568661825303	6.47521554288376	-0.244265748657679	0.368980141188214	0.753809303364759
Merged-chr9-50461000-2	chr9	50460500	50461500	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33525.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.30836616943705	3.68764370661062	3.83433017214669	3.35693389489454	3.79703792963264	4.07978973147933	0.483170131931851	0.452646355745492	0.809456767794566
Merged-chr11-3185962-4	chr11	3185457	3186457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	B1_Mur4|SINE|Alu	7506.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.25293037339653	6.74474886654566	7.10993084664971	6.74208721036343	6.41465921329065	7.33731743968649	0.215250423343364	0.560066350698172	0.865168135946323
Merged-chr1-43471436-4	chr1	43470937	43471937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	25686.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.50450183276698	3.64492443417547	3.40722578549013	3.88107578507196	3.49535411492749	3.75580296691147	0.651008906703116	0.2646809947597	0.662622264703947
Merged-chr18-15214474-4	chr18	15213983	15214983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63037.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	5.64813605592837	5.86551204928053	5.9667815748039	5.69173303049739	5.77069610820106	6.2114101593076	0.128467305217637	0.700283450382209	0.920919335036368
Merged-chr8-73233628-4	chr8	73233118	73234118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	B4|SINE|B4	119922.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.85955498222086	4.56998453616181	5.00923739574949	4.94521267855151	4.95913878584684	4.47961116320364	0.0130600417432134	0.976079257062212	0.994572735300192
Merged-chr9-108808378-4	chr9	108807921	108808921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030729)	promoter-TSS (NM_030729)	41.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	6.00538015164424	5.9896786277934	5.9586846095125	5.72358860779633	5.64269485837434	6.01943358016369	-0.344226106408202	0.264834830678796	0.662699098164859
Merged-chr2-117120721-6	chr2	117120197	117121197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033524)	promoter-TSS (NM_033524)	-374.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	7.92915776230485	7.61633866114017	7.86739470069403	7.74698494899474	7.630272268208	7.84456474728043	-0.101187397407621	0.661273417036998	0.906313637571144
Merged-chr8-40491575-4	chr8	40491076	40492076	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011135)	TTS (NM_011135)	18903.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	4.93060558937083	5.19564640650794	5.16292703961599	4.57740295547355	4.8047529360316	4.77077700271705	-0.830772165166861	0.0354009746338038	0.230982129592808
Merged-chr2-59234767-2	chr2	59234267	59235267	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	73917.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	2.79425512154165	3.04993855937403	2.88082075238198	2.91308571100495	2.85494912078019	3.23998801238847	0.429577576080395	0.548804628072351	0.860028357389381
Merged-chr8-27029660-2	chr8	27029160	27030160	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153592, exon 6 of 12)	exon (NM_153592, exon 6 of 12)	5861.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	4.44216956357145	4.47073612776661	4.60609134308573	4.57944614317841	4.54820049831646	4.67185155639617	0.231536887322105	0.579567343984293	0.872571259966152
Merged-chr18-68180467-2	chr18	68179967	68180967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	MTC|LTR|ERVL-MaLR	-47479.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.07428709059665	2.67087584266814	2.80637409579999	2.62839227895997	2.50254977046157	2.62520335248032	-1.56238800363151	0.0493412785657064	0.282345719475641
Merged-chr10-62506387-4	chr10	62505871	62506871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	1386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	8.56141192629846	8.81573605269836	8.1330177377772	7.97399672703014	8.65063272074618	7.81933864663941	-0.454174013647344	0.144874485541679	0.507780063817804
Merged-chr15-34238145-4	chr15	34237639	34238639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033521, exon 1 of 7)	5' UTR (NM_033521, exon 1 of 7)	113.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	7.20501580081919	7.36363149644584	6.68276189571148	6.8320740846141	6.79115691537442	6.60055729780207	-0.578223781505258	0.0462762698653249	0.272176502614853
Merged-chr15-75969146-4	chr15	75968635	75969635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347040)	promoter-TSS (NM_001347040)	12.0	NM_001081065	69020.0	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	4.77576642373104	4.98051232812696	5.21440736816302	5.04578155709468	4.82468770832524	4.83560140824924	-0.188844304859098	0.634163943346998	0.896306748317281
Merged-chr2-29619615-4	chr2	29619072	29620072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039087)	promoter-TSS (NM_001039087)	-148.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.98638523742163	5.76607778785706	5.92693786056107	5.94682357962599	5.59634976993411	5.71278192656834	-0.24536493454023	0.439708480122257	0.801308218958155
Merged-chr13-17698031-2	chr13	17697531	17698531	+	636.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025479, exon 2 of 2)	3' UTR (NM_025479, exon 2 of 2)	2618.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	3.05760916748511	2.91080585603911	3.11659930391071	3.32563008825099	3.08731814990991	3.51404607862826	1.2258102789689	0.067912562345413	0.341030083743942
Merged-chr17-73950280-4	chr17	73949783	73950783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-87.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.8141686814022	7.75641152655514	7.39504106226521	7.82001223447605	8.17128076466852	7.91298205682826	0.43651769978022	0.0789945096527235	0.371354528767447
Merged-chr13-30750671-4	chr13	30750187	30751187	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013674, exon 2 of 9)	exon (NM_013674, exon 2 of 9)	1454.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.99648947024939	3.6587137898686	3.82809447343879	3.8754435914085	3.62227007085201	3.45255956162656	-0.557332461763554	0.33300276711954	0.723931920221625
Merged-chr2-60289733-3	chr2	60289274	60290274	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5290.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	4.95338997626416	4.94068132673638	5.1589691504118	4.75067402248168	4.64964437995855	5.25172148777516	-0.260120585872553	0.532321111648474	0.851971173271146
Merged-chr9-118691344-3	chr9	118690855	118691855	+	654.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-20337.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.71283593588702	2.98504496648944	3.23237300092634	2.72349522732459	2.78596643342702	2.9748137190463	-0.769250183016689	0.304091807227542	0.700651940638246
Merged-chr6-129237039-4	chr6	129236546	129237546	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	MTE2a|LTR|ERVL-MaLR	999.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.21711731705714	6.97539673470666	7.2707996167693	7.75910165937359	7.9303540992982	7.55267507341484	0.891627454949627	0.000291381637238542	0.0068009209737292
Merged-chr14-121997984-1	chr14	121997484	121998484	+	757.0	f1_balb.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-32791.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	3.51010434692597	3.33814712348253	3.60929156092118	3.82607289395618	3.74502275734868	3.45636809581966	0.724995797522	0.214341495012545	0.607456645674519
Merged-chr11-117116972-4	chr11	117116475	117117475	+	854.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1803.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.87497634256364	7.06870635362143	6.82156890968238	7.18579379514961	7.67406298055496	6.76677370479378	0.522919460771714	0.0936528746189959	0.407604513537973
Merged-chr7-127746885-2	chr7	127746385	127747385	+	892.375	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172748, exon 1 of 11)	5' UTR (NM_172748, exon 1 of 11)	110.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	2.84039858656576	2.49431014736401	3.05174126972124	2.47911044883773	2.38449885442115	2.78537944671953	-1.40211019283638	0.102594449492144	0.427175688217691
Merged-chr9-54501241-2	chr9	54500741	54501741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172771, intron 1 of 43)	CpG	385.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	7.06540194582648	7.22959764627711	6.62206875205833	6.6325314208533	6.37887693621623	6.35881046888798	-0.851738164201795	0.00355413423331569	0.0477141660673979
Merged-chr9-61023558-2	chr9	61023058	61024058	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	6489.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	5.56373756842534	5.42323394665548	5.42464718551825	5.58635065680949	5.64885899057373	5.65870149554586	0.294707376775241	0.359220496309555	0.745440547165336
Merged-chr3-108654757-4	chr3	108654282	108655282	+	859.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177771, intron 2 of 12)	intron (NM_001177771, intron 2 of 12)	842.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	5.32938045929542	5.72828651925311	5.34203674515585	5.93985377262444	6.20827058368394	5.71209343111507	0.887743652995906	0.011437839826222	0.110529724179136
Merged-chr15-97580929-4	chr15	97580418	97581418	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124904.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.98266377949857	5.26771705758347	4.92206738013484	5.05675036461857	4.82872386275792	4.98773632015178	-0.254949230610356	0.508833989687933	0.840060686784793
Merged-chr6-92943162-3	chr6	92942668	92943668	+	835.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	CpG	2586.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.80080858503029	4.05847922137604	4.04628055680748	2.97467990563229	2.82657132267739	3.16231852889391	-6.20590198738112	2.44735366993429e-07	1.56591453759712e-05
Merged-chr11-69582583-2	chr11	69582083	69583083	+	834.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	2224.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	3.82922138538471	3.63819460808019	3.90668119629937	3.69646747114604	3.89579757457414	3.72405723599209	-0.0313589913070244	0.953523078364402	0.989446911725587
Merged-chr5-149690043-3	chr5	149689534	149690534	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	11777.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	3.98855027120527	3.77987545935477	3.83679775865838	3.67103970585559	3.25990501753783	3.95377096971857	-0.717242432224302	0.241846206312085	0.638862793574907
Merged-chr2-3511661-2	chr2	3511161	3512161	+	672.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149715, intron 1 of 4)	intron (NR_149715, intron 1 of 4)	1153.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	4.71492338639739	4.8527246692606	4.71996020329889	5.0008358419214	5.1152738890802	4.78707852201387	0.483750770751955	0.218242421087034	0.612414823722149
Merged-chr18-82903202-4	chr18	82902727	82903727	+	813.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7652.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	4.44132219297125	3.86548225833848	4.11549652134275	4.20834584152057	4.12234083098081	4.08764798313773	-0.0716516925755485	0.888608410609446	0.974077866731537
Merged-chr17-31834219-2	chr17	31833719	31834719	+	922.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21585.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	2.42290728814729	2.32088823015845	2.27424524622641	2.65743437737684	2.61076351481755	2.61874061024946	1.80403741150865	0.0336926904087789	1
Merged-chr6-129534244-4	chr6	129533753	129534753	+	892.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-969.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	5.85480338005542	5.82343118294382	5.27862195464263	5.42203188669537	5.46752665196971	5.27465701234384	-0.556108602647535	0.122147671250902	0.467488313759489
Merged-chr2-148073322-3	chr2	148072824	148073824	+	775.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26355.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.7855058929572	3.86826188524916	4.07633809519091	5.251809937763	5.82327278006271	4.78953086445882	3.7559843841005	3.00967889315433e-12	5.30570680808444e-10
Merged-chr2-6479175-4	chr2	6478662	6479662	+	955.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126426.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.20876054588642	7.55472114367566	7.19897604819976	6.73116776753723	6.67160045531345	6.91937302230428	-0.860843669982403	0.000911749930740664	0.0167816300916376
Merged-chr10-25359803-4	chr10	25359322	25360322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358755)	promoter-TSS (NM_001358755)	24.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	7.73564939491051	7.43240712620749	7.52180461208853	7.85698672930357	7.41668469819345	7.38887556722969	0.00610964913257069	0.9812142840214	0.995687678606673
Merged-chr3-27202945-4	chr3	27202459	27203459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19955.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.77099818796271	6.95887529192652	6.59184378928601	6.62543949945319	6.84599155825863	6.54400208570048	-0.162099712600061	0.552671434802672	0.86185173258107
Merged-chr12-80937893-3	chr12	80937388	80938388	+	760.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7511.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	4.67729600819878	4.56506066436681	4.43483979636299	4.98853875343446	4.65192561710927	4.83459286473676	0.603796509967152	0.149928941111022	0.516532267802498
Merged-chr11-119228495-4	chr11	119227990	119228990	+	991.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	9.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	7.08921079482568	6.96425644773788	6.57014841653201	6.13980849304409	6.11626568636423	6.37090230949965	-1.11887115389755	0.000103337725102244	0.00291376666564132
Merged-chr4-133748418-2	chr4	133747931	133748931	+	723.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	5180.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	4.08204904777522	4.36851373085434	3.98831025985977	4.02019244808744	3.93242084133095	4.20118969325571	-0.333798729910615	0.505053837364071	0.837928144581384
Merged-chr2-156065488-8	chr2	156064995	156065995	+	981.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139151, exon 1 of 12)	exon (NM_139151, exon 1 of 12)	282.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	6.08398723835102	6.32481204229514	5.88440424101823	5.52148565687766	5.3533998326761	5.50955867905393	-1.1986831889905	0.000207967797922803	0.00517129748311589
Merged-chr15-81568806-4	chr15	81568314	81569314	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17400.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.24209261033614	4.37556334497797	4.4377735471681	4.39388372137819	4.68210695510322	4.776507703372	0.687387689222461	0.119107621776663	0.461413799189562
Merged-chr5-121122670-3	chr5	121122126	121123126	+	774.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	68771.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	3.44546486599614	3.12807759438472	3.70658772238611	3.98004784199414	4.25130927528173	4.20574161310763	2.45351679211475	0.000104078524378208	0.00293068218492789
Merged-chr12-3423892-4	chr12	3423390	3424390	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	RMER17C2|LTR|ERVK	2857.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	4.99016294898561	5.14510998302674	5.34488600402282	5.55520918312388	5.38773539060546	5.62983006254604	0.719481383767199	0.0414171494155582	0.254410022779401
Merged-chr3-10297359-4	chr3	10296949	10297949	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	3734.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	2.38588667674369	2.17781761672863	2.23323006311474	2.46502602606655	2.35766650351199	2.5066857457162	1.12614163880773	0.189945340927374	1
Merged-chr14-46742912-4	chr14	46742436	46743436	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-17605.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	5.18999241448857	5.20889878723182	5.3183409962508	4.51733168771981	4.45973238796259	4.86268653537358	-1.40402919695138	0.000434336264341082	0.00940259042588961
Merged-chr17-5976411-2	chr17	5975911	5976911	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	825.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	3.72360746942735	3.63021501408432	3.96524947479687	4.05391623095161	3.52726348592962	3.51083057375548	-0.16251732476441	0.784398572948194	0.947576747080331
Merged-chr2-128796210-2	chr2	128795710	128796710	+	615.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-22093.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.46804413140572	5.28159720031662	5.29165174225285	4.98951455920422	5.10834488032279	5.32421585639282	-0.431031955758801	0.229063726059203	0.624547300541785
Merged-chr2-137881192-4	chr2	137880703	137881703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-375381.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	3.90487127122059	3.51114460203648	3.95547895072016	3.56920128588134	3.43883750842991	3.93228576467744	-0.482908694343985	0.417048903624713	0.787790390691704
Merged-chr2-167926253-4	chr2	167925756	167926756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-6071.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	8.06590788650958	8.0042752939357	8.1536608857843	8.07315584116555	8.3153801576547	8.02813400146864	0.109353234003872	0.617796405472441	0.888970416534964
Merged-chr16-94238458-2	chr16	94237958	94238958	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	51833.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.09715124611215	3.18322172570749	2.89052299121898	3.13887087032942	2.9572449748756	3.53068101867009	0.674521217621545	0.346568461172241	0.734711689104559
Merged-chr19-16086223-1	chr19	16085723	16086723	+	760.0	f1_balb.idr	Intergenic	Intergenic	-46608.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.42010515429202	4.39864172833212	4.48859080996887	4.70535856600527	4.84651130418925	4.93740572224736	0.952938713134494	0.0206111865831905	0.164595260068859
Merged-chr12-51867261-2	chr12	51866783	51867783	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-37747.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.57133011987629	4.96562293067821	4.91298502002438	4.29145346876284	4.11519094801693	4.35310795902091	-1.45282525707144	0.00123899931721918	0.02130252161312
Merged-chr7-135735879-4	chr7	135735413	135736413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19534.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.20868484730514	4.42646743689383	4.5627649728957	4.66874802422975	4.79093043899994	5.02293555481196	1.0359813013853	0.0168662805755546	0.144131608722476
Merged-chr6-108568063-4	chr6	108567563	108568563	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55104.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.75900108271066	5.72287661729079	5.83658640388456	5.65543684364743	5.56200276840731	4.99144320655044	-0.59724163556884	0.103709761352241	0.42934834114604
Merged-chr7-127511993-4	chr7	127511500	127512500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	17.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	7.99177674374238	7.88012649860056	7.69839381429622	7.89586832609863	7.94055745784092	7.63238346571289	-0.0442967567581835	0.848878311676288	0.964450572223884
Merged-chr1-80635893-4	chr1	80635450	80636450	+	923.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	29402.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.31081717759271	5.75535009510138	6.17406752893825	5.86975395032699	6.02795309988736	5.82251204181271	-0.317308402700409	0.331788223663231	0.723058323983775
Merged-chr6-146578233-3	chr6	146577700	146578700	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	289.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	8.23265774050025	8.65743971926673	8.25656280516124	8.18983897559066	8.58013946231512	8.26755608360338	-0.0555688044425238	0.822073119699552	0.958041123079214
Merged-chr15-99001740-4	chr15	99001211	99002211	+	989.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15746.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	5.52125216162021	5.44299980539713	5.80777331152524	5.60269091646239	5.75182686883382	5.61339186167443	0.13926158800045	0.672296311917819	0.910756996322765
Merged-chr17-46646164-4	chr17	46645658	46646658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	-63.0	NM_001316742	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	7.44722708418925	7.68029441534486	7.38544165542593	7.57305537175962	7.53046464983247	7.12719668458946	-0.118789042528894	0.64219183621709	0.899360402389155
Merged-chr5-120514441-4	chr5	120513907	120514907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	3215.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	7.97775117885898	7.79146203184022	7.76306756953189	8.12277362246382	8.00368364291934	7.91853256954995	0.241474545924668	0.27210701564731	0.669529543069504
Merged-chr6-148458606-2	chr6	148458106	148459106	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	2.62289053797298	2.77286047602882	2.56060179984232	2.73688973758455	2.66022665198325	3.05890892647878	0.863033394264396	0.266593990608146	0.664166899200562
Merged-chr7-80020206-2	chr7	80019706	80020706	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4608.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.00011327651109	3.9551250327694	4.45109898069452	4.39656772249039	4.31837140970142	4.39537037392438	0.619084326797909	0.202639471753037	0.59252027125208
Merged-chr19-5929752-4	chr19	5929227	5930227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4911.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	8.00720335376088	7.75175892073197	7.27936552350595	7.56924801428295	7.85929547756936	7.41914154235991	-0.125658606440031	0.659767096658062	0.90561726711854
Merged-chr18-65429690-2	chr18	65429190	65430190	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-1307.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	5.42115130154589	5.60130220706759	5.26232647391479	5.64107799884779	5.5794595482331	5.42471277501118	0.209969532226662	0.535824997276335	0.853668337370661
Merged-chr18-67448379-2	chr18	67447879	67448879	+	825.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 1 of 16)	intron (NM_027130, intron 1 of 16)	757.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	4.73364218980484	4.99854022318436	4.81593737498954	4.86643914122553	5.01475864506171	4.54573203895343	-0.0437511340294284	0.916332951166817	0.981243905880233
Merged-chr3-9656765-4	chr3	9656262	9657262	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46677.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.45910571688405	3.44402115406357	3.46494945168366	3.48994954709862	3.38766255205216	3.1184613914838	-0.413354257128765	0.506543039733024	0.838470324751826
Merged-chr14-55778099-4	chr14	55777612	55778612	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080435, intron 10 of 25)	intron (NM_080435, intron 10 of 25)	5960.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	4.12764199072469	4.17256271792051	4.22905991112366	4.44774160851432	3.99602755354162	4.05903560156582	0.0248273967075166	0.959701748932728	0.990242512723989
Merged-chr1-16658906-3	chr1	16658429	16659429	+	662.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	1377.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	5.62524549223196	5.97877617383135	5.97910727479146	5.42382746671669	5.54481295932835	5.92932610102166	-0.415049220053304	0.227883847433706	0.622981752321771
Merged-chr16-17721344-4	chr16	17720830	17721830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	(CACCC)n|Simple_repeat|Simple_repeat	1570.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	7.49444823729895	7.40690856032548	7.2514056415001	7.56930749360708	7.58356443520357	7.26051237509893	0.137879524959395	0.568606158864485	0.868630778930676
Merged-chr1-88433698-4	chr1	88433209	88434209	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26699.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	3.53977041373523	3.5470219374015	3.60410658028822	3.41910415679789	3.30286793825843	3.62244704846982	-0.431308822425081	0.459390406050318	0.813647027205785
Merged-chr11-101083122-2	chr11	101082622	101083622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 2 of 10)	exon (NM_001305982, exon 2 of 10)	557.0	NR_155015	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	7.84155964244283	8.07652903801034	7.76722401247464	7.54545116009102	7.7680123168457	7.70978267762973	-0.326663655926869	0.157306225182761	0.528495229716136
Merged-chr18-61093913-4	chr18	61093415	61094415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11657.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.23103211919619	5.78128236831105	6.19136921785681	6.13484987862821	6.15534201139098	6.50679449507123	0.319793018228709	0.313255491058582	0.707836272539716
Merged-chr10-120129175-2	chr10	120128675	120129675	+	672.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16210.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	1.88044590744304	1.81487604773008	2.10353363610773	1.71977805640572	1.75041471129975	1.77878473369311	-1.70279282613078	0.105597588357458	1
Merged-chr18-60803075-4	chr18	60802557	60803557	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-792.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	6.35112230426445	6.13059237684705	5.97974226573756	7.07281058096071	7.41747205937964	6.68855887253959	1.47498727363173	2.43187597397171e-06	0.000118681252810697
Merged-chr3-137879884-4	chr3	137879386	137880386	+	909.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	(TTG)n|Simple_repeat|Simple_repeat	12211.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	6.69980877345881	6.60798849270866	6.30447039102468	6.51102275376285	6.30241681490238	6.42322360964086	-0.238334544457526	0.39548842551004	0.772842311340033
Merged-chr18-39835830-4	chr18	39835278	39836278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62281.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	5.41249063930684	5.40732273825831	5.62925762902914	5.40931097253968	5.23242223699883	5.38433252661789	-0.273532561146938	0.42034570739995	0.789584525478281
Merged-chr1-155380209-2	chr1	155379709	155380709	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 2 of 14)	MTE2a|LTR|ERVL-MaLR	37235.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	4.30635112957644	4.14508017713047	4.00949859368516	4.16921456221686	4.27020525544206	3.86499730793459	-0.115724540242036	0.818909593925382	0.95713841971837
Merged-chr4-133158726-2	chr4	133158226	133159226	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28093.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	8.1060482146885	8.08759202123812	8.0303035766235	8.2283801520942	8.48237062526814	8.25644012637748	0.35882839746503	0.0921454565359269	0.4043262747161
Merged-chr12-83987902-4	chr12	83987427	83988427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134188)	promoter-TSS (NM_134188)	66.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	8.8676751675678	9.26155820362575	8.45225019205266	8.54224732787292	8.59432973881986	8.14915692628731	-0.635587687547842	0.0227432412713564	0.175875429340801
Merged-chr10-80692388-4	chr10	80691911	80692911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	ID_B1|SINE|B4	9409.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	7.54896295281114	7.19665364935353	6.91975448847854	7.34794115101884	7.57197557731784	7.13360887214706	0.16877923077037	0.552798216296739	0.861940911171568
Merged-chr13-102664236-4	chr13	102663744	102664744	+	967.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29303.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.6170817964586	4.60586232144419	4.63952072238468	5.11289964026671	5.1622357988441	5.11612950478999	1.14308977828779	0.00269361245803624	0.0388104078629055
Merged-chr18-32857649-4	chr18	32857176	32858176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20389.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	5.01856002736129	5.14263160349493	5.08822218100016	5.01962789550376	5.11353932120691	5.28066358907247	0.10802008361791	0.766163292898813	0.942366894267556
Merged-chr15-101283356-4	chr15	101282854	101283854	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-947.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	5.69284171039898	5.6961890172054	5.1688272092616	5.915923986681	6.09171295226992	5.38163264721079	0.524572806510222	0.175075109475296	0.554789005606688
Merged-chr9-107709568-2	chr9	107709068	107710068	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	CpG	907.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	3.05077364823904	2.93908654461948	3.03234590212414	3.29223692035819	2.63912886568153	2.98427812522478	-0.0236206431062757	0.97531336532674	0.994454548709104
Merged-chr3-87008543-2	chr3	87008043	87009043	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-9203.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	3.54561183909206	3.7016731766712	3.32213278315716	3.99403957084904	3.87411684754323	4.1840418934821	1.55514458761347	0.00902429764509941	0.0937796626019023
Merged-chr19-16382549-2	chr19	16382049	16383049	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-53118.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	3.57458703213861	3.36228350433172	3.45638052492216	3.63322871070379	3.44880600689567	3.23306950458726	-0.0542365896620995	0.929392536420669	0.984100584711557
Merged-chr16-33669260-2	chr16	33668760	33669760	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-15206.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	2.97669851441104	2.80691438579148	2.95826561930126	2.92740136517961	2.96898314265752	3.19856326008886	0.557580554744944	0.418870715615678	0.788755230826602
Merged-chr1-155094364-2	chr1	155093864	155094864	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5272.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	2.90692710693398	3.12368169433654	3.00910569423779	2.8757910750354	3.0286385409315	2.83446159762777	-0.450832201904482	0.520279161083084	0.846311592349268
Merged-chr5-114651568-4	chr5	114651038	114652038	+	924.636902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	6883.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	4.88969619989205	5.08400358831317	4.88772324745038	4.21964132752402	4.0206347405426	4.13945728287581	-2.14152832364846	1.82979690903777e-06	9.1774406996513e-05
Merged-chr2-174434825-2	chr2	174434325	174435325	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	4214.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	3.38344404710159	3.45159531303826	3.41833072348427	3.29859530532707	3.11947913912643	3.74036563313538	-0.0498385048229746	0.938409090562945	0.986383997265845
Merged-chr16-91881336-2	chr16	91880836	91881836	+	915.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50294.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.34531909377488	5.35736215986435	5.74142973992928	5.19103330544217	5.17068713232791	5.32107803568729	-0.51072725468494	0.152084139625219	0.520007249500677
Merged-chr11-21093600-2	chr11	21093100	21094100	+	900.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	2276.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.09894191250596	6.09509179701258	5.73210033278336	6.1009279071456	6.43605177642586	5.85046694863359	0.290012016773957	0.381564418456171	0.76320489744768
Merged-chr8-25745186-4	chr8	25744693	25745693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361595, intron 7 of 15)	intron (NM_001361595, intron 7 of 15)	9087.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	4.69307563214238	4.40283005221667	4.92067697230563	4.33910291022487	4.22035145360289	4.42676983971198	-0.8902529129786	0.0507510338761284	0.286946140373269
Merged-chr5-146819628-7	chr5	146819123	146820123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13267.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	7.87592694182522	7.73400481639247	7.67610291510142	7.89671900811143	8.16162124104452	7.61808756462524	0.220057685647352	0.374479273224864	0.758087520776938
Merged-chr8-40608573-1	chr8	40608073	40609073	+	739.0	f0_c57.idr	intron (NM_001040699, intron 2 of 13)	Lx8|LINE|L1	26219.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	2.60090705847428	2.7914720460392	2.71195228113811	3.24118651158241	2.95287263256977	3.21492386918688	2.19992882046225	0.00414867412964319	0.053365675977803
Merged-chr19-32756287-7	chr19	32755811	32756811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1266.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	8.4693524787166	8.46864104362506	8.03456206970995	8.31123896911977	8.46286408782287	8.24481768059388	-0.0012969826027768	0.995572440804299	0.998961028701257
Merged-chr2-73486468-4	chr2	73485959	73486959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289723)	promoter-TSS (NM_001289723)	-706.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.60645907391979	7.7125813265876	7.20218579057649	7.4028462596487	7.78625215006496	7.2722794242973	-0.0257689526451718	0.925921768133196	0.983305773102619
Merged-chr16-92818793-2	chr16	92818293	92819293	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	7281.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.71457711369631	3.05482722011842	2.95668593115211	2.82193500503211	2.81265694168481	3.0287715486781	-0.144511202475426	0.841286284815849	0.962909549034125
Merged-chr8-4677454-4	chr8	4676976	4677976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64306.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	7.822216790802	7.75820976542138	7.75114458397343	7.69553213837825	7.80739114043624	7.41726987588541	-0.171138554254826	0.461727800250775	0.815107818354545
Merged-chr18-33794840-4	chr18	33794349	33795349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-43.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	6.72350346407316	6.90754358610883	6.66379871369635	7.12333326153303	6.86359655098562	6.89423045246682	0.294245287974145	0.255033017226874	0.652024436103169
Merged-chr7-89252860-2	chr7	89252360	89253360	+	749.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	ORR1E|LTR|ERVL-MaLR	85927.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.42965967477321	3.46015279922356	3.26600878072014	3.26550481709115	3.24813712647649	3.44974163977456	-0.294475586408789	0.628860582065641	0.893945342282012
Merged-chr10-77623144-5	chr10	77622543	77623543	+	935.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	722.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	7.76733862100655	7.82784117869134	7.70529388009301	7.75519358414458	7.64063817107431	7.49191521888188	-0.191089248919251	0.392013851839806	0.770817604836983
Merged-chr8-111243778-4	chr8	111243274	111244274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	15428.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	5.53517982353058	5.63034790218145	5.55273817324555	5.99129755398858	5.931074877519	5.80548645451299	0.621507941226569	0.0436840693069079	0.262716608848934
Merged-chr4-126556941-4	chr4	126556436	126557436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175554)	promoter-TSS (NM_175554)	-44.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	3.01504717499667	2.90703323018202	3.00604075207355	3.15911938929502	3.35449435815846	3.19869904883284	1.19975847991374	0.0693758844284555	0.344737449478825
Merged-chr7-17060191-4	chr7	17059709	17060709	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	2218.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	3.67671247250659	3.58340330265209	3.86793041399782	3.77547176172873	3.55699682042096	4.27966222492514	0.593974921890334	0.312462042901768	0.707170399766948
Merged-chr16-25058227-4	chr16	25057726	25058726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.92088286809093	7.15275542996555	6.73127445828288	6.56540934134447	6.47362344265019	6.39884594654456	-0.740737557400906	0.00608654836611116	0.0705066847344254
Merged-chr12-85471173-2	chr12	85470673	85471673	+	990.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2717.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.25607795094814	3.89919865922823	3.66832721553636	3.74933334469691	3.68590984640127	3.56537505209447	-0.95765366446184	0.0940856145945831	0.408560072801142
Merged-chr1-36574867-2	chr1	36574367	36575367	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-16486.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	5.04689636229982	4.98958305222338	5.55297611094384	5.26891280943225	4.84750417651975	5.31529864165829	-0.118871068101168	0.772167581845686	0.943680976839558
Merged-chr7-79924755-4	chr7	79924255	79925255	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027420)	TTS (NM_027420)	-4115.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	3.88112459137613	3.44582955327064	3.81583244333646	3.56837504516011	3.54512690205439	3.68457067521638	-0.439456505425091	0.444860602776906	0.80451990949491
Merged-chr10-120980011-4	chr10	120979505	120980505	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-675.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	8.03356890530374	8.21873248914283	7.35087237493094	7.3549290094224	7.37503478881439	6.77693672498524	-1.04571190688866	0.00115402528477992	0.0201224090310074
Merged-chr17-33932383-2	chr17	33931856	33932856	+	887.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_009059, exon 5 of 18)	exon (NM_009059, exon 5 of 18)	2462.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	2.70130983212499	2.66235679049207	2.86600044042411	2.9491929641413	2.67417097879356	2.87907210069247	0.486456076453135	0.507093547513927	0.838829594648539
Merged-chr4-95209958-2	chr4	95209458	95210458	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157736.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.08269481774702	3.91997529711647	3.94609122778113	3.52212894283751	3.61543339962621	3.91888920248407	-0.965681812810879	0.0759677008363407	0.362719943259898
Merged-chr16-90742962-2	chr16	90742462	90743462	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	4638.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	4.11145026329977	4.15095320862549	4.1619292583556	3.89088013849269	3.6867626166814	4.4351832274674	-0.306860420578483	0.575386561293857	0.871089076039513
Merged-chr3-59185799-4	chr3	59185292	59186292	+	957.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	9312.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	3.49870443273513	3.38417215408069	3.42684762777186	3.4044662858277	3.49308794806158	3.70623691950175	0.357058245413332	0.540326400066664	0.85632302227606
Merged-chr16-36920633-4	chr16	36920136	36921136	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030035, intron 14 of 21)	intron (NM_030035, intron 14 of 21)	-14347.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	3.38284221905776	3.24375860434132	3.42956976387445	2.97430547602169	3.09950512631951	3.16909638912952	-1.1530146840334	0.0758410428215048	0.362539808419832
Merged-chr19-5611462-2	chr19	5610962	5611962	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1368.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	3.79873157370275	3.55894187723991	3.77457546311807	3.40323547090796	3.61490401179756	3.84320100483829	-0.290966855283527	0.612700654708299	0.886888853880768
Merged-chr4-139234682-1	chr4	139234182	139235182	+	780.0	f1_balb.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	40571.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.53300812181099	5.56171580601782	5.70297499249376	5.79256807394994	5.64971113390639	6.02136060941491	0.409083656343973	0.205074282433729	0.595694220420628
Merged-chr19-40688633-2	chr19	40688133	40689133	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	B4A|SINE|B4	28863.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.12301755091413	3.95034878746461	4.4819203590643	4.2436566778031	4.60135446970933	4.05433378232393	0.361573559309102	0.486579089044483	0.827960589799864
Merged-chr1-138253116-1	chr1	138252616	138253616	+	545.0	f0_balb.idr	Intergenic	Lx5|LINE|L1	-20622.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.20861313580745	4.27236973539073	4.44698770807302	4.11731496489871	4.16740837065666	4.6267583336714	0.0137622640673371	0.977235885985894	0.994771164142869
Merged-chr1-154093553-4	chr1	154093069	154094069	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107618.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.4599634136491	6.51146394001636	6.47943745511231	6.03845189175004	6.13955152259997	6.29849875296555	-0.541368781827432	0.0485450863992217	0.279568044405863
Merged-chr8-94362673-2	chr8	94362173	94363173	+	589.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-23756.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.52142927148408	2.45107561290284	2.78905212150902	2.4498961259469	2.60286704554789	2.55983546688955	-0.282324729928281	0.723504251144134	1
Merged-chr6-116670292-6	chr6	116669809	116670809	+	895.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	3527.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.56632951993196	6.23239397881914	6.68766750271854	7.08712422686894	7.0389603302149	6.92496067060648	0.814678275818741	0.0026394844751155	0.0381825841803565
Merged-chr6-124738665-4	chr6	124738165	124739165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	44.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	6.34525699513425	6.29430584098696	6.57726486660006	6.60636655678182	6.77312756733749	6.76216817335989	0.504087973701239	0.0593122499609961	0.315444778246871
Merged-chr11-97830684-4	chr11	97830192	97831192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10088.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	7.95910967912594	7.95773890312421	7.61893026329418	7.66034217529596	7.86983411876749	7.35555103777565	-0.294381835486249	0.252188646295289	0.64970951645701
Merged-chr10-81059236-2	chr10	81058736	81059736	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358550, intron 1 of 11)	B1_Mur2|SINE|Alu	940.0	NM_001358549	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	3.93814060809683	3.91728841526345	3.73309977021613	3.63310777638352	3.6692569136675	3.58345402839152	-0.793529033568092	0.142218007930064	0.503446333443608
Merged-chr18-65674712-2	chr18	65674209	65675209	+	696.25	f0_balb.idr|f1_balb.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-23559.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.14947397558478	2.92159990560572	3.18972560903581	2.93763120395251	2.92215680498581	3.14953317437034	-0.396198016217191	0.560203236340218	0.865187357612257
Merged-chr16-15569388-3	chr16	15568885	15569885	+	838.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 2 of 2)	MTD|LTR|ERVL-MaLR	25133.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	4.26510109642715	4.12028623836896	4.29637984457495	4.03830911966971	3.58216235604377	3.84384271773484	-1.1942619321074	0.0239444615366539	0.181908061985867
Merged-chr5-5232724-4	chr5	5232233	5233233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 3 of 14)	L1_Mur3|LINE|L1	33335.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.06184354340331	3.09485246895871	3.04991765431172	3.14303229930118	2.86904101823963	3.29221885491202	0.15992360872999	0.814019104884304	0.955990764833427
Merged-chr3-136113178-4	chr3	136112717	136113717	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	212849.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.44071958971043	3.86092711711327	3.61809228122172	3.30035668946953	3.33889710728625	3.58359150059508	-0.901898156074351	0.136914327088567	0.494310206464419
Merged-chr6-88898747-4	chr6	88898249	88899249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	31.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	6.65262248574298	7.0241611014641	6.68656730730269	6.92866906066449	7.11691397788831	6.60764372545353	0.16644644824866	0.561370646182139	0.865407801976397
Merged-chr4-41353084-3	chr4	41352580	41353580	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1117.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.83668080829042	6.10848828695089	5.92699329451842	5.84391629557807	6.07230548039674	6.03433289071415	0.0404568078382975	0.89386162736358	0.975280227461205
Merged-chr6-97464355-4	chr6	97463830	97464830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-5044.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.27377773918321	8.19900902120222	8.095254429568	8.1151703972069	8.47621246602478	7.90864703399991	0.00671901410526495	0.978146526296518	0.995056069639346
Merged-chr2-160621583-5	chr2	160621004	160622004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24393.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	7.45305316374024	7.53212271413736	7.7487426380178	7.20164150217265	7.23913072630504	7.52248618727042	-0.37716517696702	0.122959197225353	0.469148413250216
Merged-chr8-22136736-3	chr8	22136215	22137215	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	RLTR44B|LTR|ERVK	-11648.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	5.84684539885978	6.35598844442964	5.50185590679399	3.91938860146476	3.60289387236232	4.21402858918211	-6.30966675190144	2.60270081370834e-15	7.57222130444208e-13
Merged-chr8-69792005-2	chr8	69791505	69792505	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133224, intron 1 of 25)	PB1D9|SINE|Alu	842.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	5.51841786707733	5.65843283666361	6.52100041419889	6.46081557573377	6.60686325900393	6.77359861214349	1.06876959185933	0.00477481731889564	0.0593166616110284
Merged-chr11-51925342-2	chr11	51924842	51925842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42289.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.36944540759647	6.31844426820849	6.56937162306758	6.45286393162725	6.44725078506322	6.12656875208268	-0.0902210657438515	0.751117764860333	0.937718261890661
Merged-chr1-62703415-8	chr1	62702970	62703970	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010939, exon 1 of 16)	5' UTR (NM_010939, exon 1 of 16)	153.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	4.41252663680868	4.38363754591365	3.92815376688751	3.58780135293536	3.45262680964364	3.47773400870829	-2.54392139553942	1.50332134519668e-05	0.000568842030428038
Merged-chr6-32480893-3	chr6	32480371	32481371	+	634.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-30270.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	6.07340278069775	5.9354857901816	6.00306867421838	5.42625028088978	5.73756162972369	5.61369231767904	-0.717656296749512	0.0228943770351212	0.176682927503095
Merged-chr16-24933914-4	chr16	24933414	24934414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125725.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	7.90371450272686	8.15934017211389	7.79437891840859	7.90819097736004	8.24426615553259	7.84213543607699	0.0723063828883186	0.768615291446393	0.942871018290895
Merged-chr11-55032304-2	chr11	55031804	55032804	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	1167.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	2.8352269411507	2.72884661478219	2.64727243232294	2.83720016192843	2.6214752579748	2.84758363768652	0.137583129367479	0.853191912510817	0.965620139502178
Merged-chr11-103027025-4	chr11	103026517	103027517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1526.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	8.20504974423586	8.30907815336127	7.94426342559074	8.02199760577299	8.55781695942578	7.80638625916781	0.0197539115588066	0.943460699182236	0.987403029464253
Merged-chr7-120677506-4	chr7	120676982	120677982	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164580)	promoter-TSS (NM_001164580)	-138.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	5.6614534695744	5.61360353685356	5.21782646781763	5.36882958355937	5.58419967163048	5.77854776440536	0.108560042263026	0.759971185949456	0.940572672765463
Merged-chr17-34934051-4	chr17	34933562	34934562	+	879.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 4 of 6)	exon (NM_010893, exon 4 of 6)	2809.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	5.89091547489374	5.79728530088578	6.27779227276219	5.74109185119333	5.79071371839216	6.33707330797219	-0.0376241229862227	0.9143323034184	0.980912729144991
Merged-chr11-70130116-3	chr11	70129621	70130621	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145137)	promoter-TSS (NM_145137)	-236.0	NM_145137	216864.0	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	2.75894194022705	2.71441874367505	2.91399617355233	2.67317805972357	2.60387547404598	2.98573757248325	-0.191057930371068	0.798987487900725	0.952147379219007
Merged-chr11-118227852-4	chr11	118227350	118228350	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-15108.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.26848442567131	6.22770077808761	6.20676200191658	5.81415153112753	5.7508144399238	5.61033710425981	-0.873685491103991	0.00304719109951324	0.0425857510950031
Merged-chr18-82822473-3	chr18	82821981	82822981	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33416.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.56076372483388	5.5930998227211	5.31416037686167	5.9431691843006	6.2173134382578	5.3095183487474	0.708780636290228	0.0657998317594161	0.334764439072913
Merged-chr8-70836440-1	chr8	70835940	70836940	+	1000.0	f1_c57bl6.idr	intron (NM_027560, intron 6 of 7)	intron (NM_027560, intron 6 of 7)	3280.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	2.56248694833445	2.4867990291914	3.00124103041232	2.52794176623598	2.41014181466994	3.01906677558866	-0.113904208756527	0.894735335155185	0.975576532925631
Merged-chr7-46985934-4	chr7	46985454	46986454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	9322.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	5.38689376921732	5.07251986630549	5.55583421161764	6.08720491443064	6.00715075344041	5.70209112222268	1.1245776271381	0.00112634229610575	0.0197399711856698
Merged-chr10-67185695-4	chr10	67185189	67186189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242396)	promoter-TSS (NM_001242396)	-61.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	7.7948500881067	8.02430789818344	7.57294966032685	7.7919748121809	8.02724490644699	7.59968647685563	0.0120615662642656	0.962086694683833	0.990739203008446
Merged-chr2-49453004-4	chr2	49452520	49453520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172663, intron 1 of 13)	intron (NM_172663, intron 1 of 13)	1534.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	5.85583802988782	6.21175291508657	6.07748710547015	6.26031496520048	6.10360145402441	6.09396673925005	0.166526356519593	0.576460297756612	0.871585692229598
Merged-chr6-5291720-4	chr6	5291219	5292219	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	6654.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	4.60561836123297	4.78981376852032	4.76210657944274	4.31156786403122	4.31289947147784	4.59866993685626	-0.781355075625118	0.0693000750953588	0.344463599076142
Merged-chr2-128126602-3	chr2	128126121	128127121	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	583.0	NM_009754	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	7.31562434437688	7.54241938421715	7.74454710422422	7.44914424703415	7.55040458396766	7.75992940834762	0.0708626569563373	0.775468436822369	0.944682505926692
Merged-chr6-42382269-4	chr6	42381801	42382801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9033.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	7.30925555502137	7.16608150582529	7.01932549015018	6.82345905478806	6.93305848682822	6.879860041817	-0.448783169540927	0.0683622333605877	0.342008460405711
Merged-chr10-20105525-4	chr10	20105014	20106014	+	939.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-43406.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	5.68616730797009	5.68828962416301	6.05834178709197	5.19817175392652	5.37591222591485	5.6925641034929	-0.718080936302596	0.0419239390632692	0.256217930339809
Merged-chr13-65112140-4	chr13	65111655	65112655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	827.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	6.80617320665159	7.18086931092266	7.08693931273521	7.02562227553722	6.96447564625045	7.33971957412954	0.119496493504502	0.654984916424668	0.904048560566546
Merged-chr2-62686526-2	chr2	62686026	62687026	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 5 of 7)	B3|SINE|B2	22199.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	3.0333143187052	3.30640192871558	2.89188225760456	3.29881267264143	2.84131550063918	3.43692691621485	0.521455934856079	0.486405230110243	0.827845021635872
Merged-chr6-24664281-4	chr6	24663781	24664781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	714.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	8.34379285805232	8.76627521790559	8.40202973827136	8.21789597453488	8.28362564019187	8.25196955076868	-0.376924971235448	0.0966002608829789	0.414325490079944
Merged-chr8-22928771-4	chr8	22928247	22929247	+	915.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 13 of 17)	intron (NM_001081149, intron 13 of 17)	-46089.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	2.80477928376123	2.48708553547467	2.83472123543706	2.79404229859282	2.61331139550172	2.96569535978685	0.405669012425538	0.602887072253495	0.882410334354772
Merged-chr10-37359241-5	chr10	37358830	37359830	+	940.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220404.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.4953626696785	5.72435545444365	5.56370575641033	5.53428824073955	5.61718881735911	5.62615536096497	-0.0160689619567689	0.960212144342597	0.990348208964981
Merged-chr19-32485907-4	chr19	32485402	32486402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010799, exon 1 of 5)	5' UTR (NM_010799, exon 1 of 5)	133.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	6.55200412875136	6.56826816694842	6.05775976775114	6.17225817893002	6.22830444032553	5.97219727197634	-0.479737356780414	0.11846895596616	0.459921210483695
Merged-chr11-118210335-2	chr11	118209835	118210835	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L2b|LINE|L2	2407.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.46443737690643	5.32351469450755	5.19027516427113	4.59540282464285	4.62495189392461	4.82782330127158	-1.43391058659437	0.000180230051916281	0.0045945411028952
Merged-chr3-10430772-2	chr3	10430272	10431272	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 4 of 6)	B1_Mur2|SINE|Alu	9358.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	2.78913889567487	3.00098222566491	2.90810775818995	2.51935505867775	2.74244444497597	2.67228921779377	-1.33998443611313	0.0852250579423549	0.386417290181674
Merged-chr15-39933610-4	chr15	39933103	39934103	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	10391.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	3.5844132189979	3.44648758000175	3.18798186412965	3.29108820562376	3.10650797986965	3.37932778597833	-0.652563110542454	0.308521339561498	0.704565421726157
Merged-chr1-95468337-4	chr1	95467855	95468855	+	726.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154727.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.6021143341729	3.4005022852693	4.03135764729888	3.63903129977929	3.43267692145157	3.46496923013214	-0.628408859075706	0.304690346961902	0.701027910687293
Merged-chr12-99526405-2	chr12	99525905	99526905	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37436.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	2.43873172212195	2.40486298166032	2.43341017687996	2.54647389410848	2.50525555026539	2.6961688953776	0.940469339926829	0.235101016771689	1
Merged-chr7-98082623-4	chr7	98082124	98083124	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 18 of 48)	intron (NM_008663, intron 18 of 48)	26624.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	5.05328219378548	4.91810954349082	5.11553138941417	4.7094622389185	4.52146075206638	4.63392898002256	-0.929019415084968	0.0189961053586607	0.156111400956389
Merged-chr4-95191883-1	chr4	95191383	95192383	+	907.0	f0_balb.idr	Intergenic	Intergenic	-139661.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.15221936375957	4.37495097845013	4.72772692465103	4.21126962859589	3.95850284264157	4.33549279068245	-0.699073680988895	0.161194279160949	0.533934404934789
Merged-chr14-27379553-4	chr14	27379047	27380047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	18158.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.85581075297067	7.76742264367474	7.77059797212755	7.85573798065021	7.90525881037486	7.46069944331095	-0.0496032886177587	0.83515833478941	0.961518889781208
Merged-chr5-135477779-2	chr5	135477279	135478279	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	67343.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.41763709796851	6.13185788297948	6.09038502122754	5.9367247293283	6.40187948634379	6.39400480270134	0.0604723395675767	0.846308076322474	0.963987423586105
Merged-chr4-145276756-4	chr4	145276248	145277248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 11 of 12)	intron (NM_009401, intron 11 of 12)	-29878.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.1269208156843	5.40760294208504	5.86357749171831	5.22700729689956	4.96746298888025	5.43675682759856	-0.544783784191559	0.177286072036044	0.55822004025504
Merged-chr1-94147239-4	chr1	94146725	94147725	+	938.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94672.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	4.5226179624493	4.69102078559535	4.56847283783461	4.69771818159127	4.5713756001472	4.67557893963296	0.112941332126592	0.783938176967109	0.947376685867648
Merged-chr7-127774126-4	chr7	127773610	127774610	+	804.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198424, exon 2 of 2)	exon (NM_198424, exon 2 of 2)	-3279.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	3.27292931026535	3.00473935197293	3.29812902581398	3.26834308002739	3.12001131541843	3.52633947133977	0.460235930833088	0.482895006836701	0.825867492178998
Merged-chr6-136543311-4	chr6	136542819	136543819	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	24468.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.44558334583074	4.50564991449173	4.35311844248421	5.04882685060904	5.16634516297177	4.81736843478481	1.35710677171607	0.00103453205896822	0.0184922327739264
Merged-chr11-53796957-4	chr11	53796455	53797455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	26482.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.80866779927785	6.82710228492003	6.63438777570941	6.70475242892399	6.86543521524775	6.62520181386486	-0.0343230741343792	0.89435609587794	0.975478229649209
Merged-chr15-86180603-3	chr15	86180112	86181112	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-5116.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.43205448493197	4.40140721748591	4.62625670518836	4.60501215653659	4.18308017393295	4.53433095012417	-0.0966394139823691	0.831649761645537	0.960478468368024
Merged-chr4-137862214-4	chr4	137861728	137862728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-9.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	6.19750884024973	6.34121590762912	6.62563951108141	5.92143427179698	5.53049349041065	5.86176549743392	-1.06431573154741	0.000847589940805828	0.0158272584817261
Merged-chr3-88503463-7	chr3	88502976	88503976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111102)	promoter-TSS (NM_001111102)	-124.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	6.89736208191402	6.57732541601517	6.42766035176414	6.19258720990499	5.88059185029427	5.68634580390239	-1.17846102479925	0.00021346547055155	0.0052753296328047
Merged-chr5-134227146-2	chr5	134226646	134227646	+	673.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 4 of 10)	intron (NM_010876, intron 4 of 10)	2479.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	4.3288123738505	4.34090475142411	4.3990108894569	4.18462127359772	4.10139243008721	4.80028998652228	0.087162161687842	0.860942022863167	0.967718046637016
Merged-chr7-80232770-4	chr7	80232255	80233255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011870)	promoter-TSS (NM_011870)	50.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	6.4208179127165	6.44348164746186	6.29244735637427	6.4312325545255	6.54468042178048	5.98960130604221	-0.0528919787070077	0.859895909592564	0.967435965660262
Merged-chr1-106214309-1	chr1	106213809	106214809	+	849.0	f0_balb.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	42440.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	2.95311746594586	2.89940268422555	2.92766618271766	2.88384926880328	2.50951025577156	3.00049516614578	-0.570162248407089	0.463720958638238	0.816038286358001
Merged-chr5-67828620-4	chr5	67828133	67829133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	MLT1A|LTR|ERVL-MaLR	18798.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	6.0407661523267	5.6770504953027	5.52164796965968	5.98017678449042	5.68842400465782	5.90908249411853	0.150351539066486	0.656048520457124	0.904520810952906
Merged-chr11-63813045-4	chr11	63812561	63813561	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10D2|LTR|ERVK	109223.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.65052683582185	4.69883044995554	4.44832060028728	5.12986285995643	4.82965835691279	4.92353584778686	0.813513166764284	0.0477329409332924	0.276739308053052
Merged-chr3-153567900-2	chr3	153567400	153568400	+	694.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	157233.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	2.5605659514075	2.65921435141061	2.67021372281029	2.79906078477582	2.60810119069084	2.92447274437139	0.797060800809521	0.291026369080279	0.688788068334381
Merged-chr6-127574195-4	chr6	127573681	127574681	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3794.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	4.18044753674869	4.18767530220727	4.17462373620214	4.44724733038361	4.40020659344115	4.37942290219773	0.614403726449906	0.169142524024367	0.545783024459701
Merged-chr15-100614627-4	chr15	100614113	100615113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045701, exon 2 of 2)	non-coding (NR_045701, exon 2 of 2)	497.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	8.1421878487507	8.09981518447152	7.95175455388244	7.84709233989697	8.32436381692543	7.73868834577812	-0.0887629642108917	0.72822033580399	0.930450957443275
Merged-chr1-88215690-2	chr1	88215190	88216190	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 2 of 4)	intron (NM_201642, intron 2 of 4)	3731.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.49878382988407	3.6953198379554	3.71755549176228	3.43716914187167	3.51885493994754	4.06044481615694	0.183716202464474	0.760363842933729	0.94072272518104
Merged-chr19-23028401-4	chr19	23027900	23028900	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112826.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.47043219734555	3.84022521188673	4.06064114590258	4.01745093876644	3.9968373464164	4.56591384125776	1.19089904463278	0.0401839397634555	0.249598780220783
Merged-chr6-39227948-2	chr6	39227448	39228448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21175.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.81275699632961	5.7716290694813	5.31832250656585	5.5536940537671	5.33547983509366	5.78387027368932	-0.196183682473474	0.584729306361797	0.874697183297721
Merged-chr4-88862781-4	chr4	88862271	88863271	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12684.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	3.0368276358472	3.02053537442002	3.20979490869708	3.18396178976957	3.0416437061029	3.33516631356186	0.429454811066906	0.510947804599808	0.841230434419772
Merged-chr1-152810003-4	chr1	152809496	152810496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	9843.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	6.43934544990324	6.61548324482773	6.62390275309399	6.60830368537257	6.85025786363186	6.91992414060481	0.377536226263527	0.154696868603336	0.52390421792532
Merged-chr4-45472250-4	chr4	45471759	45472759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	58569.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	7.16000705081202	7.25731574822123	6.76338667949328	6.72558345326849	6.85279402951503	6.22191207678566	-0.682894082454668	0.0266538050452882	0.194272057656652
Merged-chr4-47398422-4	chr4	47397900	47398900	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	12184.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.0815458331429	2.83395870817167	2.97815802262925	3.01570827843101	2.90954693549852	2.73359718099922	-0.351399453389515	0.625400613975912	0.892508244243549
Merged-chr3-103212379-4	chr3	103211904	103212904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	40749.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	4.08898158402363	4.19522161987525	4.49849194386882	4.49941754252271	5.31375913918703	4.47956337796741	1.38803035488607	0.00645327371828331	0.0736778265025958
Merged-chr10-110918946-8	chr10	110918438	110919438	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	5.0399681918102	4.99457360858004	4.7152416559179	4.56831361868616	4.61340495724989	4.43121243370553	-0.894880915700307	0.0310058276990597	0.213182359211978
Merged-chr13-85223370-3	chr13	85222874	85223874	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 20 of 24)	intron (NM_145452, intron 20 of 24)	33989.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	3.91748653769771	3.93406025552562	3.90132808739125	3.4793657120513	3.41215815617808	3.61274105376655	-1.47315487716015	0.00793829874532215	0.0856052309487773
Merged-chr18-9491286-4	chr18	9490841	9491841	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41187.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.87336213538705	6.72751684355131	5.56471743052324	6.3958971557748	6.36214952713537	5.1091153820848	-0.706399226400262	0.504920532828947	0.837922371273056
Merged-chr1-177261023-4	chr1	177260522	177261522	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12255.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	6.5720556245155	6.70376166848084	6.82775859086317	6.62757998599974	6.78365811523591	6.8574372929508	0.0910213819303249	0.726013118307207	0.929743505822386
Merged-chr11-115639144-4	chr11	115638638	115639638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10843.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.76829425726388	6.24091432746388	6.10773271056313	6.33330400919805	6.59000996565302	6.19191411973029	-0.0397209390170625	0.903476702734624	0.977829235846862
Merged-chr8-72173247-1	chr8	72172747	72173747	+	918.0	f1_balb.idr	intron (NM_023126, intron 3 of 7)	intron (NM_023126, intron 3 of 7)	12047.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	2.30618861195679	2.37365546204323	2.52088608824363	2.44662626754903	2.32929462372622	2.33913128411136	-0.172217834686818	0.834402730481693	1
Merged-chr5-99414144-2	chr5	99413644	99414644	+	959.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161217.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.81871977199084	6.81805139856234	6.78172934314427	6.45837867253557	6.49977861624347	6.05984860523729	-0.697968160394589	0.012577841523024	0.118150489664459
Merged-chr7-80202733-2	chr7	80202233	80203233	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4292.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.44736298921077	6.66056862449482	6.25314039190518	6.56795037690203	6.62519879256501	5.87324660903243	-0.0947338116774972	0.777610891639023	0.945202525595529
Merged-chr7-132315162-2	chr7	132314662	132315662	+	786.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-502.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.54749736380386	3.61213554270049	3.70099036666109	3.55324037601333	3.67326886563422	3.71963288960861	0.10930404589699	0.842233479052427	0.963002495523594
Merged-chr12-81657807-4	chr12	81657305	81658305	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26556.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	3.49619359883742	3.41046463937074	3.6253705070773	3.71289672058028	3.7246250994244	3.64295537572401	0.666585690271981	0.231034229250103	0.626813326547916
Merged-chr2-164856042-2	chr2	164855542	164856542	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011125, intron 3 of 15)	B3|SINE|B2	1666.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	4.23826616734523	4.2960569630598	4.54779697088382	4.58958332547755	4.60208145791974	4.87082665571026	0.817090237461479	0.0621589168687996	0.323884974313925
Merged-chr18-60735755-2	chr18	60735255	60736255	+	591.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-2614.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.08047551724567	4.97625724439263	5.28151491847111	5.38139276974821	5.25810077366407	5.04479831885037	0.273277143993034	0.45806344664317	0.812791853920592
Merged-chr2-167271720-2	chr2	167271220	167272220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31183.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	5.0271962512048	5.1963586554475	5.13562768129252	5.37530094956109	5.33701218522116	5.09558619171214	0.329371565765487	0.358147922550388	0.744578238636691
Merged-chr9-65460872-4	chr9	65460366	65461366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138584)	promoter-TSS (NM_138584)	-71.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	7.37591381008545	7.0940776808583	6.76697484455141	7.14969367419168	7.35067652903218	6.79297451738862	0.0244024835808806	0.93447351509659	0.985708863052331
Merged-chr14-103719035-4	chr14	103718541	103719541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19609.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	6.49465464623962	6.75746960058659	6.06232017474785	5.79795274592803	5.77386601413248	5.5158449611829	-1.31395718264946	8.71134660063702e-05	0.00252914768997141
Merged-chr8-56292499-4	chr8	56291921	56292921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2131.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	7.25386642159967	7.23842517137792	7.11842930433203	7.11526523155901	7.56111325604871	7.27380139849119	0.193101982726166	0.446022947557364	0.805519011576263
Merged-chr12-3791971-4	chr12	3791496	3792496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14984.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.35570118875092	5.47405709594914	5.84408028926845	5.89124594761157	5.99326671926357	5.62169856914204	0.535172621235915	0.117679010840804	0.457968997429571
Merged-chr10-68725578-4	chr10	68725086	68726086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1840.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	6.63948956504101	6.79743503694095	6.40900198245795	7.01261476720744	7.05634453889886	6.75534703036767	0.496666691966548	0.0671749610921313	0.338860083520226
Merged-chr11-119354194-1	chr11	119353694	119354694	+	1000.0	f1_balb.idr	intron (NM_018822, intron 1 of 7)	intron (NM_018822, intron 1 of 7)	1316.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	4.59083110905543	4.92127823746355	4.61716645149871	4.64278502556756	4.22292338309872	4.42632520669626	-0.698064988491039	0.120053804451258	0.463288978795117
Merged-chr15-38520765-2	chr15	38520265	38521265	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1499.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	3.05720618076718	2.91756488579308	3.10422236315055	3.2873963834091	3.04796990293564	3.05746421113614	0.491667415657436	0.460191702273315	0.814287275692701
Merged-chr8-83331811-3	chr8	83331371	83332371	+	724.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170691, intron 1 of 8)	intron (NM_001170691, intron 1 of 8)	615.0	NM_001170691	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	6.02714581602629	6.0590848533624	6.02512314061772	6.1137392098975	6.32986242200722	5.94324095034543	0.194737685320347	0.511480992192562	0.84141212364859
Merged-chr5-64812251-3	chr5	64811749	64812749	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8726.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.44891829079003	7.57602637681011	7.70087294149365	7.31409175508538	7.6420181101176	7.17471705572202	-0.252563898390355	0.32067228670669	0.714486534537161
Merged-chr9-65552920-2	chr9	65552420	65553420	+	768.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	27167.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.90721533495959	6.46503966468028	6.60988484098108	6.5703960288367	6.44770578504919	6.11367306524989	-0.442954608125802	0.139583257633741	0.499245344789732
Merged-chr5-25086409-3	chr5	25085906	25086906	+	831.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 1 of 15)	MIRb|SINE|MIR	14236.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	3.1542636143257	3.01845963961034	2.89207049750311	2.80561818732512	2.48408183183185	2.5679750997901	-2.27405916153044	0.00691007205763659	0.0773437282447976
Merged-chr4-145231929-4	chr4	145231421	145232421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	14949.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.70984802517217	5.51965626462082	6.27639051779402	5.6726439754665	5.68597719073418	5.79781985371027	-0.26277379200984	0.46508739962333	0.816792117070463
Merged-chr6-120454845-4	chr6	120454342	120455342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-8355.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	7.08029538610624	7.25646028467842	6.8447397183834	6.98179397365195	7.01843449227742	6.60263660523092	-0.28679869096335	0.297184313080227	0.693830312086969
Merged-chr11-4261311-4	chr11	4260818	4261818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3750.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	4.253575214238	3.85290168705295	3.91746524409365	3.83503194844924	3.82680176501119	3.88562835851761	-0.54253026379812	0.299606950550605	0.696314831841331
Merged-chr8-70509007-1	chr8	70508507	70509507	+	662.0	f1_c57bl6.idr	intron (NM_001348227, intron 3 of 3)	B1F|SINE|Alu	938.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	4.1089479020044	4.07296509286881	4.29664371121904	4.04739469722285	3.84877310690399	4.4818771031932	-0.0472207338554661	0.927494831438587	0.983584626679457
Merged-chr11-83664340-3	chr11	83663790	83664790	+	584.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1706.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	7.3257670725216	7.24054866512731	7.22212608413992	7.0632940772933	7.4049889397861	6.81044823022117	-0.200139352067221	0.458646011097301	0.813172231997942
Merged-chr5-108447206-4	chr5	108446710	108447710	+	968.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1890.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	2.72992614713559	2.50647323464352	2.68935103204086	2.35526062918215	2.34005534165257	2.44783967900741	-1.69743118651173	0.0430494041018608	1
Merged-chr5-113987547-2	chr5	113987047	113988047	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	BGLII_B|LTR|ERVK	6210.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	2.85437141351409	2.81245224354852	2.9307459195744	2.98725099626358	2.98989994738193	3.06207474635425	0.714553611344887	0.29386445027124	0.690438710263513
Merged-chr17-34862284-4	chr17	34861792	34862792	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013484)	TTS (NM_013484)	222.0	NM_001142706	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	4.14314329857826	4.09303931908803	4.22866792939608	5.11853667676369	4.67054682425349	4.48815069567984	1.612026380689	0.00055478693268403	0.0113982002703143
Merged-chr17-74018896-2	chr17	74018396	74019396	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	29020.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	5.2014967315796	5.53989569897866	5.37307192579213	4.98258745325429	5.17091943390047	5.11572259613934	-0.5794588165169	0.110199811181397	0.44355436116098
Merged-chr17-14960979-5	chr17	14960485	14961485	+	778.780029	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 1 of 11)	CpG	275.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	5.46504199991686	5.43247317974539	5.66963333224221	5.56957077410283	5.15060960717942	5.36849266660642	-0.291111323469003	0.407949503776796	0.781926100186554
Merged-chr19-5691146-2	chr19	5690616	5691616	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	1985.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	5.24051727837401	4.82246841756244	5.53855513323715	5.15364978398443	5.19400992903497	5.74513311673996	0.316462754911462	0.453778258908025	0.809979841654596
Merged-chr10-42761505-4	chr10	42760989	42761989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153055)	promoter-TSS (NM_153055)	-7.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	7.49026660975734	7.30745839562686	6.96325054968951	7.3853023157453	6.90060270404252	7.18158967181633	-0.166869840823923	0.552123021951205	0.861546661145201
Merged-chr16-26041518-4	chr16	26041031	26042031	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	64253.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	3.2210556908721	3.05971293613047	3.0434693284219	2.81108766955765	2.89406655822302	2.9964991220327	-1.00668160955955	0.144400556638194	0.50717662222064
Merged-chr12-3310051-4	chr12	3309546	3310546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016676)	promoter-TSS (NM_016676)	-77.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	8.01844133653199	8.23923610769209	7.85427837290972	8.11288403465626	8.03852513796446	7.91824497697732	-0.0359727500154525	0.874872647227152	0.970813891247597
Merged-chr7-45562031-2	chr7	45561531	45562531	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7103.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	2.76932963031509	2.75514764207462	3.28382821021139	2.77982100639072	2.61060585924822	2.53397990404996	-1.58817188690119	0.052954822444388	0.294812315398945
Merged-chr19-46305661-4	chr19	46305171	46306171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177370)	promoter-TSS (NM_001177370)	-24.0	NM_019408	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	8.94223107782954	9.03626253462259	8.84371023588131	8.78673223109478	9.15063164107002	8.76843549339524	-0.0346756739889945	0.874932791652773	0.970814878355033
Merged-chr12-73880661-4	chr12	73880176	73881176	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20648.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.57188940365512	4.63028582249743	4.72733870639542	4.84379809710071	4.73544616641165	4.97141101145785	0.480378264144865	0.230053350639314	0.625817164441292
Merged-chr15-97593878-3	chr15	97593384	97594384	+	673.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111938.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.51075450397516	4.26107123265499	4.30805476725886	4.49006159593277	4.6256077520841	4.78353992425289	0.661777308826376	0.131873933035382	0.485639782197417
Merged-chr14-69732242-1	chr14	69731742	69732742	+	934.0	f0_balb.idr	promoter-TSS (NR_130166)	promoter-TSS (NR_130166)	328.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	6.451454721671	6.70252166162256	6.4280315965542	6.57770361263212	6.72145883536724	6.350925958921	0.0488202437513639	0.862036742288972	0.967996224966109
Merged-chr2-45096178-3	chr2	45095683	45096683	+	599.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149354, exon 3 of 3)	non-coding (NR_149354, exon 3 of 3)	14094.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.55712087400256	5.2912401315515	5.64093157916605	5.27638300200802	5.2850825465032	5.84526609121632	-0.028898611854234	0.93839226680694	0.986378773831125
Merged-chr2-162932042-4	chr2	162931507	162932507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026499, exon 2 of 6)	exon (NM_026499, exon 2 of 6)	499.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	8.95427615689249	9.29392558097157	8.61105560062113	8.71398022431363	8.76296473575784	8.70129608464667	-0.360673213131307	0.139814059404318	0.499619852047003
Merged-chr7-28169917-8	chr7	28169441	28170441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	CpG	193.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	8.35573931045992	8.73258282774211	8.13569961907524	8.36742337794981	8.31020071493553	8.37167903849167	-0.125687489791951	0.603565962149778	0.882688060083171
Merged-chr2-13273491-2	chr2	13272991	13273991	+	844.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2076.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	3.48680921258802	3.39800111610185	3.49474704729505	3.44422926917532	3.2522164381935	3.51181030746736	-0.223777944021684	0.705586180405417	0.922834459892351
Merged-chr1-86529190-6	chr1	86528720	86529720	+	870.211121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360831, exon 2 of 5)	exon (NM_001360831, exon 2 of 5)	2663.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.43322429933314	5.16874581780272	5.45010241076943	5.10441152911601	5.33547722420974	5.13960730145244	-0.295123366269111	0.412572381579949	0.784551818322662
Merged-chr11-49101673-4	chr11	49101158	49102158	+	802.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	12099.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	4.04354898512978	4.1225124141653	4.11051387234138	3.92205971457967	3.93178406671421	3.88686772939237	-0.530136081466905	0.279868251761427	0.677566338635538
Merged-chr16-58712415-4	chr16	58711926	58712926	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6298.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	5.52401027836112	5.74333980523656	5.80593601635147	5.42676577939466	5.34742240639138	5.58749415959728	-0.458604728395245	0.165988936427253	0.541109862183596
Merged-chr2-181600390-2	chr2	181599890	181600890	+	827.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-929.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	4.64604588910916	4.9813967435013	4.70408753892706	4.73428031454578	4.76245917790671	4.80936031865922	-0.0570208892762676	0.888031908188867	0.97399766709611
Merged-chr5-23851401-3	chr5	23850901	23851901	+	858.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028536)	promoter-TSS (NR_028536)	804.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	5.55960550041456	5.55361397076334	5.30357661196743	6.00915635224853	6.23010164097928	5.98794324059196	1.07423386745479	0.000768198609130257	0.0147247799743171
Merged-chr14-70064046-2	chr14	70063546	70064546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13399.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.40164918401282	3.34458917858139	3.46870081572257	3.74384945761195	3.41710856463098	3.42772764298788	0.504188603777929	0.394993813965781	0.772579826044138
Merged-chr14-60990284-4	chr14	60989788	60990788	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	47699.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.44851556000463	3.26049255026514	3.41382086748347	3.84307602649337	3.5921583664305	4.24834255144191	1.86458904871351	0.00247070175119429	0.0364055518529085
Merged-chr11-55077491-4	chr11	55076977	55077977	+	955.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	654.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	5.07219441980996	5.38482484094779	5.21619542380364	5.16848536810189	4.94381696313304	5.53938395614455	-0.0124283530337455	0.974589881251533	0.994296985713596
Merged-chr1-181255647-2	chr1	181255147	181256147	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43669.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.53575321885861	4.66602727078879	4.80382100377962	4.31850757723066	4.43848336012684	4.68617432770504	-0.453434404375662	0.295240881427769	0.692108839606757
Merged-chr13-78163206-4	chr13	78162688	78163688	+	946.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	33261.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	2.82484800862191	2.62269978599014	2.5987054974423	2.81515533967603	2.81979104735302	2.98383946095919	0.943276220148494	0.207927574248156	0.598762332515681
Merged-chr1-91086324-3	chr1	91085794	91086794	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	32850.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.04422778358832	3.75921259615181	3.86127602313815	4.73286612253376	4.39164277635425	4.14786674170087	1.54889994625788	0.0027109548368934	0.0389714962681773
Merged-chr17-35861466-7	chr17	35860920	35861920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134122, exon 1 of 4)	exon (NM_134122, exon 1 of 4)	102.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	6.54028795322686	6.45621122790764	6.53095036545831	6.11814088928785	6.41255033472977	6.374491283814	-0.323129733511987	0.240584850005585	0.637636063043946
Merged-chr1-36559084-2	chr1	36558584	36559584	+	865.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001126047)	promoter-TSS (NM_001126047)	-703.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	3.78189215487204	3.55898298434711	3.67949689486352	3.88267703023461	3.53380156242247	4.04052903490254	0.492174071496613	0.386438883879772	0.767120406662124
Merged-chr4-129578728-4	chr4	129578247	129579247	+	968.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182783)	promoter-TSS (NM_182783)	-167.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	5.02562974152308	4.74600774202617	5.48232868863263	4.63695463583636	4.70362818641091	4.85176385214132	-0.832144483084412	0.0544911712547367	0.299780366450488
Merged-chr8-11456056-3	chr8	11455556	11456556	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	MTE2b|LTR|ERVL-MaLR	-21873.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.96595382946929	4.68257548520264	5.04162439302817	5.04961823392858	4.84815127437868	4.89474815312277	0.0755030581015842	0.848058409166105	0.964318271116593
Merged-chr13-111468055-2	chr13	111467555	111468555	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 2 of 12)	L1M3|LINE|L1	22072.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	4.59338525358945	4.74680993447076	4.68198089783522	4.91739781192019	4.84145017015019	5.47801683169532	0.930891315951402	0.0292800566848605	0.205632592558564
Merged-chr7-71832340-3	chr7	71831840	71832840	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77355.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	2.80099291137628	3.18533950478653	3.15728164828563	2.56883132652018	2.59543811735551	2.65099101925857	-2.76188406944166	0.00122569405738771	0.0211154350159662
Merged-chr2-167630630-2	chr2	167630130	167631130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	intron (NM_001311131, intron 1 of 4)	1375.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	4.23338270734974	4.13064560488472	4.18087993922042	4.16426393382128	4.18839702945358	4.10723282316934	-0.0710639340861787	0.878635381292975	0.971993895004067
Merged-chr1-171234399-4	chr1	171233899	171234899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-50.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	7.60923110001096	7.66296164609132	7.62833714314084	7.85935562679006	8.00706710060176	7.82584909214663	0.38822303203836	0.0730221537450112	0.355092419106101
Merged-chr10-127605801-1	chr10	127605301	127606301	+	885.0	f1_c57bl6.idr	exon (NM_008512, exon 5 of 89)	exon (NM_008512, exon 5 of 89)	15347.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.75960053379945	7.79286884299265	7.92229140848164	7.25756249901491	7.27012464967563	7.30310363314158	-0.799550389228168	0.000316333011398602	0.00727714603606714
Merged-chr11-69093702-2	chr11	69093202	69094202	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	5174.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	6.74538912855795	6.3662172043227	6.68653794716076	6.53786692220804	6.77681545906276	6.68179727352593	0.103888598932261	0.707161135424387	0.923235066940604
Merged-chr1-60566859-4	chr1	60566360	60567360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045513)	promoter-TSS (NM_001045513)	-95.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	6.39293098479828	5.97021623297577	6.17041823680336	6.1366505047983	5.91287909296196	5.86062280947125	-0.364183374839429	0.240152684658103	0.63714008816221
Merged-chr6-120038549-7	chr6	120038020	120039020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199083, exon 1 of 28)	5' UTR (NM_001199083, exon 1 of 28)	135.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	7.55975569608782	7.34773674056218	7.32536396193712	7.41831310657283	7.18879321140489	7.23149404202282	-0.200862309018496	0.40137134876619	0.777495220303506
Merged-chr2-16183280-4	chr2	16182777	16183777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	MER44D|DNA|TcMar-Tigger	-173027.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.67604734181925	5.03634846469278	4.81574650674297	4.68452885942265	4.87949557114644	4.88121998531357	-0.0828055777340501	0.837548799198808	0.962141375366527
Merged-chr7-80389564-2	chr7	80389051	80390051	+	913.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-1605.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	4.91352509154987	5.17025318076866	5.35238171300179	4.76983027235322	4.78480024025901	5.24162011884341	-0.45208880251329	0.267161747019941	0.664550966981069
Merged-chr10-99252563-4	chr10	99252053	99253053	+	909.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10678.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.07676791323971	3.93617809603113	3.78877709999038	3.84684013153717	3.8978809321619	3.80618297708481	-0.283979568611485	0.582561760712834	0.87378634860748
Merged-chr14-40934370-3	chr14	40933880	40934880	+	683.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	13829.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.41303942530735	5.59080060091682	5.20632151222991	5.04348550222666	5.1466187483103	4.817362090539	-0.811186548550878	0.0314035096076802	0.214711209655844
Merged-chr14-43319901-2	chr14	43319401	43320401	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27910.0	NM_027940	71826.0	Mm.335855	NM_027940	ENSMUSG00000095384	1700001F09Rik	Gm10377	RIKEN cDNA 1700001F09 gene	protein-coding	2.50427941986445	2.79242875808512	2.75791217513094	2.46869710205742	2.29395855007193	2.71125212854562	-1.12573917849662	0.186788464534176	1
Merged-chr9-63757159-5	chr9	63756720	63757720	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	CpG	774.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.77054318177358	5.9521326639525	6.06315260142855	5.93968124286487	5.70326534428582	5.6039034807147	-0.298944826303449	0.346436333101621	0.734677492075457
Merged-chr2-152803210-2	chr2	152802710	152803710	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	25279.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	5.84090019204754	5.99988612055535	5.46869170685776	5.79027652769569	5.53724868598844	5.18740214563438	-0.479271108951372	0.195119989485743	0.582787221560878
Merged-chr1-178338443-4	chr1	178337951	178338951	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-636.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	7.35805433562144	7.69846002037197	7.54728220001207	7.53833738855843	7.83382148321161	7.66064441158213	0.208838825154951	0.386925330434567	0.767303388898675
Merged-chr7-118764159-4	chr7	118763669	118764669	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 8 of 30)	RMER19B|LTR|ERVK	23898.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	4.27095091468055	4.57814172245848	4.27282325361539	4.59652676563969	4.25879827399199	4.24653608005084	-0.0253550164197982	0.956927079163075	0.989887454023164
Merged-chr2-176708165-4	chr2	176707651	176708651	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	-202.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	4.19540021600353	4.48992140716664	4.13812813927556	3.98945835006707	3.9162318000711	3.90418136178179	-1.01824028945853	0.0398955419592792	0.248530976667493
Merged-chr2-59179537-2	chr2	59179037	59180037	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	18687.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.20562708769683	3.00406839891507	2.87555431764635	3.57356063415777	3.30879075891245	3.21378548927952	1.40372716493689	0.0455948987880723	0.269669193761294
Merged-chr16-33770085-4	chr16	33769612	33770612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.2692553461827	6.06932725424279	5.86122616246361	6.65634939847452	6.61341840233938	6.52686749776842	0.841509785647986	0.00336522270401192	0.0458062245632953
Merged-chr5-25100851-4	chr5	25100351	25101351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	-124.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	6.98713607678922	6.94143294041531	7.21722730396108	6.073850048199	5.67188409909783	6.12644233959693	-1.77294836520357	1.49872305370476e-09	1.60496457982839e-07
Merged-chr16-91741666-2	chr16	91741166	91742166	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	MER21C|LTR|ERVL	12295.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.85618401510991	4.79910851428867	4.7801038024358	4.64410427698804	4.52834825897007	4.64955799383345	-0.494189727860197	0.216567022102928	0.610067901049387
Merged-chr7-31127584-3	chr7	31127085	31128085	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-562.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	5.06177696177412	5.07583968738295	5.12760417104919	4.93451206952589	4.71455512256723	4.79845231250306	-0.593015066765844	0.117010728291264	0.4567645612395
Merged-chr4-63386990-2	chr4	63386490	63387490	+	570.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 5 of 21)	intron (NM_001045514, intron 5 of 21)	11250.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.42125445729812	3.42631928916035	3.75190667641405	3.42222151968258	3.81852276702702	3.95949186026445	0.733279599210668	0.221030796481866	0.61561513090473
Merged-chr11-58302416-8	chr11	58301931	58302931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4638.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	6.20905699650675	6.65603486976139	6.24487085957222	6.90893893938019	6.94517948340633	6.88078508665853	0.814854155823326	0.00385569378324703	0.0505235540655778
Merged-chr4-150079823-2	chr4	150079344	150080344	+	770.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7659.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	5.90081309931804	5.93015703538035	5.91474990001427	6.129675797672	6.27395484572018	5.82381693856934	0.325105193747475	0.287434099003165	0.684687426923231
Merged-chr15-13371562-3	chr15	13371070	13372070	+	686.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-197895.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.90946534657994	2.73689859984685	2.65227143676862	2.82492548272306	2.74360468676201	3.20169181768535	0.779955455127899	0.305812887334874	0.701883343337569
Merged-chr16-70335778-2	chr16	70335278	70336278	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	ORR1A4|LTR|ERVL-MaLR	21829.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.76831543217531	3.17881061713591	3.01457263052441	2.92358868368899	2.83871352182593	3.08678180020509	-0.236220682853699	0.741647266159632	0.934901613783339
Merged-chr10-8857108-2	chr10	8856592	8857592	+	604.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	Charlie13a|DNA|hAT-Charlie	28978.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.27990619583238	4.36368358204934	3.97130941908277	3.98189162214417	4.00172579720575	4.27726931779131	-0.395064316333824	0.42800549015419	0.79478410196054
Merged-chr9-118745609-2	chr9	118745113	118746113	+	612.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	RMER19C|LTR|ERVK	33921.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.98613605452939	3.1833791186501	2.97481148169084	3.12975797284007	2.91458449392929	3.22384241612926	0.153838142824768	0.821030767871091	0.957942312428027
Merged-chr10-118882740-4	chr10	118882239	118883239	+	872.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13836.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.86072038525142	5.66611571322738	6.03203500458585	5.73648746032063	5.38024978183298	5.69385626223618	-0.455082686714144	0.172962238374796	0.551687207865922
Merged-chr4-101675846-4	chr4	101675354	101676354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28071.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	4.82497095066573	4.67495197846547	4.92733367397998	4.76804502041388	4.65301134388288	5.15308106944092	0.123625330867485	0.76615875766739	0.942366894267556
Merged-chr12-59040314-4	chr12	59039877	59040877	+	832.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U2|snRNA|snRNA	21095.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	5.00790346618383	5.06209200749093	4.80710242577401	4.86933337139977	4.64704742925276	4.8731606640854	-0.398379930321542	0.310357329829853	0.705829393476587
Merged-chr2-32646895-2	chr2	32646395	32647395	+	754.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007932, exon 1 of 15)	5' UTR (NM_007932, exon 1 of 15)	300.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	4.14038082520889	4.43266264402387	4.43937023650299	3.84196287580238	3.74018663530829	4.12245964574118	-1.29000059476237	0.0113759019988282	0.110154825129702
Merged-chr16-55951734-4	chr16	55951291	55952291	+	970.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14484.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	5.75074455870742	6.03883624419946	5.52968500633165	5.70941791270506	6.11692080011438	5.76546421117385	0.151816928790738	0.6589366185673	0.905124111161976
Merged-chr15-73017829-4	chr15	73017331	73018331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	37981.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.04813728910378	3.98747478762707	3.68859739757386	3.74547921367172	3.87188949977086	4.11119352942856	-0.0389140275121692	0.942235837001807	0.987119565429783
Merged-chr12-55836775-4	chr12	55836277	55837277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155205, intron 1 of 10)	CpG	411.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	5.58023546321771	6.01393289020435	5.9627709463189	5.55328210557493	5.84693637438765	5.59404801836716	-0.331620971652523	0.325635958857481	0.718159390122652
Merged-chr18-34928148-2	chr18	34927648	34928648	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	3855.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	5.44371765883145	5.59267819322869	5.49533712508339	5.55116477010845	5.71588434402448	5.9826635224152	0.444863979682519	0.179771392392391	0.561280830208301
Merged-chr7-81295395-3	chr7	81294907	81295907	+	864.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 5 of 21)	intron (NM_008803, intron 5 of 21)	49827.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.80478459749754	3.55431864648257	3.42323885004398	3.48150060701826	3.02251216774486	3.60548228557245	-0.787761771973909	0.240627316482015	0.637687679146298
Merged-chr4-3059629-2	chr4	3059129	3060129	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-112454.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	1.89727979092079	1.97047039440153	2.10135893502958	1.88577034962069	1.66205335733996	1.90987526183868	-1.52390492463147	0.157752899245164	1
Merged-chr10-127211153-2	chr10	127210653	127211653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359280, intron 1 of 10)	intron (NM_001359280, intron 1 of 10)	469.0	NM_054097	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	5.94290300516819	6.20030472253118	5.25242717488739	5.86759118237075	5.39329486715176	4.99870191117971	-0.703883520997238	0.327397493243869	0.719567094160856
Merged-chr2-164838839-2	chr2	164838339	164839339	+	740.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011125)	TTS (NM_011125)	5066.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	3.32693232696812	2.92201206988572	3.29406191279652	3.45662034407251	2.87564928034134	3.5762385929562	0.566319219158476	0.442870170675211	0.803417297000959
Merged-chr9-90239289-3	chr9	90238883	90239883	+	792.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	L1MB8|LINE|L1	31386.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.20538447849001	6.07602116854937	6.47431053031477	6.36050862859424	6.31701156535361	6.66232559417931	0.320947137107199	0.27740165819328	0.674617482827602
Merged-chr5-5809453-4	chr5	5808959	5809959	+	983.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60142.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	2.14545442104923	2.18481905200814	2.36242214342887	2.13934758940083	1.9771871692848	2.37429743622605	-0.434109098071629	0.639029744960125	1
Merged-chr7-67223233-2	chr7	67222733	67223733	+	635.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131044)	promoter-TSS (NR_131044)	617.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	5.14221230714004	5.09659970776819	5.46492315506831	5.29265459735374	5.46728280282649	5.32231286004561	0.272057046051811	0.445976325542128	0.805513451373278
Merged-chr19-21738349-2	chr19	21737849	21738849	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39991.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.98583306548173	6.2059129905182	6.2036128123382	5.85108980394891	6.32736001552934	6.04971859318012	-0.0543880563586135	0.861350925988092	0.96779377844034
Merged-chr19-55581049-4	chr19	55580535	55581535	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	121169.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.66491152228487	4.76934580734108	5.02467065833739	4.9901125660329	4.87144734805408	4.98705280418739	0.288992730288764	0.461281435779737	0.814992635038861
Merged-chr5-90881122-2	chr5	90880622	90881622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10123.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	6.49654011911746	6.13248641420618	6.04191728961725	5.77811683449916	5.00136676975956	5.25747130024545	-1.53489735352459	6.54341998523794e-05	0.00197843346704825
Merged-chr2-167053003-2	chr2	167052503	167053503	+	789.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033196, intron 3 of 13)	L1Md_F2|LINE|L1	-9508.0	NM_001291162	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	3.96892435631877	3.94893642453798	4.4214875804847	4.18854433957703	4.10722133891027	4.5992861552781	0.508719468011653	0.324070896040593	0.717287790132387
Merged-chr11-34771828-4	chr11	34771339	34772339	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12066.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	6.74256582168291	6.59142885379756	6.53513426654675	6.85041287819017	6.8424856455654	6.71353599033671	0.277595298621186	0.27767690226569	0.674855968126621
Merged-chr5-34761692-4	chr5	34761203	34762203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-37.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	7.399183961981	7.35596446345122	7.14500884485874	7.30042856407214	6.98580657481104	7.39762581878377	-0.116979088841073	0.646312508055061	0.900976246381167
Merged-chr7-4657003-2	chr7	4656503	4657503	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	1947.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	4.46620872163452	4.40134711843523	4.82690699943683	4.59289501417244	4.76299869138425	5.29074252602647	0.778557594090748	0.0904234933877813	0.399959990041833
Merged-chr8-75030717-1	chr8	75030217	75031217	+	746.0	f0_balb.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2969.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	4.04510573440309	3.94604711018573	4.08805582395415	3.90062661518718	3.98352256185524	3.86383519876857	-0.310857422457016	0.532372238733662	0.851971173271146
Merged-chr15-53416450-4	chr15	53415923	53416923	+	975.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-70240.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.61752318728341	6.67634438017005	6.46030957746709	6.47580944169641	6.83474247597052	6.64300699476329	0.114290213304486	0.674683781787312	0.911852710156386
Merged-chr3-19628746-4	chr3	19628238	19629238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15722.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	8.39519426008933	8.49581575539205	8.12887936752821	8.26356934759685	8.7156864115406	8.00531822283234	0.0265717897918123	0.921143816050015	0.982526400261012
Merged-chr13-67780154-4	chr13	67779651	67780651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028402, intron 1 of 3)	intron (NM_028402, intron 1 of 3)	458.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	6.4371752671529	6.461401687241	6.20055445328592	7.11257012716512	7.43826637251578	6.57203785475278	1.128405886009	0.000382294693892509	0.00849852441608547
Merged-chr11-108445472-4	chr11	108444954	108445954	+	928.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029606, intron 5 of 27)	intron (NM_029606, intron 5 of 27)	20188.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	3.13209673358029	3.26947708522864	3.27314403257024	3.20496545506708	3.26192381872908	3.17175892974059	-0.0363863528981442	0.953622167280485	0.989446911725587
Merged-chr2-163659190-2	chr2	163658690	163659690	+	545.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039390, exon 2 of 5)	5' UTR (NM_001039390, exon 2 of 5)	732.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.32854653709348	5.68094055713293	5.70813360699974	5.70915513598912	5.76346156250458	5.81963524642034	0.339299488858297	0.301026133131009	0.697704518489441
Merged-chr10-37146213-4	chr10	37145725	37146725	+	782.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7299.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.73552997723577	4.53154350263595	4.99858667523609	4.65686371668462	4.68717569192386	4.78465040482096	-0.115694680379776	0.781783332181039	0.946286689231939
Merged-chr11-62554998-3	chr11	62554483	62555483	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3252.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	4.4079529369045	4.24196529801856	4.53345834604393	4.26174711570667	4.08244778790948	4.39762798069373	-0.398920036468587	0.390035150610945	0.769429833183019
Merged-chr15-7941797-3	chr15	7941378	7942378	+	752.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	126328.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	4.01434680555834	4.03540212655242	4.14685611632032	4.37939122342247	4.23141323777269	4.30571571253455	0.67755430630168	0.145245653029854	0.508323093916695
Merged-chr19-41830917-2	chr19	41830417	41831417	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	947.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	4.4581055135945	4.11523898108682	4.31772333624974	4.75584809828963	4.47016778224147	4.51835871872043	0.715708854033259	0.114698162941183	0.452186398382538
Merged-chr12-76942852-2	chr12	76942352	76943352	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	19396.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	6.01188132419671	6.36683666916912	6.12855084076012	6.04503114827336	6.20001845833122	5.95967513255136	-0.172290792750282	0.566751494545189	0.867613392907901
Merged-chr15-31601003-2	chr15	31600503	31601503	+	991.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	536.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	5.79879016395275	5.99351403310234	6.03538705046821	5.82299841205265	6.08128948516421	6.02963029633098	0.074560834945272	0.805621274357635	0.953956034266138
Merged-chr14-31367745-2	chr14	31367245	31368245	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009796, intron 16 of 20)	RSINE1|SINE|B4	31107.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	2.99625327953217	2.95106498963254	3.51859985621865	3.26686671346843	2.86538513234238	3.53950846135134	0.290900411377985	0.696495428098098	0.919491129354085
Merged-chr2-129623459-1	chr2	129622959	129623959	+	583.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	27997.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.07577027851114	3.22334088613479	3.3130108454551	3.52672639208102	3.20891199671961	3.69522300402054	1.10177357079874	0.0869672643130713	0.39085946467333
Merged-chr1-180250829-2	chr1	180250329	180251329	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4879.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.41684653008065	4.27421457875492	3.9599319557344	4.20212159998705	4.01073884086359	3.9235903035135	-0.524308742648524	0.299411766959065	0.696192873450121
Merged-chr5-137533197-4	chr5	137532684	137533684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010312, exon 1 of 10)	5' UTR (NM_010312, exon 1 of 10)	122.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	7.03631049174037	6.85064910961825	7.18851502095581	7.13988379140312	7.36058279152329	7.31416446426346	0.377833184187036	0.129028826656909	0.480371176632321
Merged-chr3-90126521-2	chr3	90126021	90127021	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	22389.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	5.0047603936407	5.2474987806967	4.9666317760216	5.13171081431012	5.36981242262039	5.17453477504546	0.308072521831564	0.40461046689164	0.779747209915063
Merged-chr10-62217447-4	chr10	62216944	62217944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	13774.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	6.38750565614866	6.67722419372015	6.70454645738415	6.33931583478396	6.14452331017176	6.45093098399106	-0.464464764536785	0.101606103930009	0.425209510426403
Merged-chr11-72441290-4	chr11	72440807	72441807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016776)	promoter-TSS (NM_016776)	-20.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	6.24805830796236	6.41392448867206	6.45438013784947	6.23354929114448	6.34445145312881	6.36771028097846	-0.0917467794328274	0.73746186124354	0.933770471739366
Merged-chr8-83693311-2	chr8	83692811	83693811	+	765.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_177262, intron 1 of 21)	B3A|SINE|B2	750.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.55144470264894	5.51262595552853	5.42744073774093	5.30827985724735	5.69532591996833	5.49059646628666	0.0288856195017486	0.932335486797847	0.985087224393733
Merged-chr8-117321460-2	chr8	117320960	117321960	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27710.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.57371831284149	3.56450276002079	3.97167796803645	3.58134049641216	3.38373924466325	3.99519527551958	-0.132181816118277	0.828496375763946	0.959811851673067
Merged-chr5-138619751-4	chr5	138619264	138620264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044747)	promoter-TSS (NM_001044747)	-21.0	NM_001044747	24135.0	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	6.7912470272348	6.91276608148792	7.07737359076935	6.99472767552237	6.91219803614091	6.75739999479179	-0.0456781440161879	0.857605504377322	0.966767080388296
Merged-chr11-78323135-4	chr11	78322705	78323705	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009657)	promoter-TSS (NM_009657)	132.0	NM_001303423	11676.0	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	3.03699266337607	3.12317433377302	2.89426113233147	3.07652856888637	2.81347137575579	3.36961262848905	0.340088801948128	0.637272669561708	0.897338937840938
Merged-chr14-68580908-3	chr14	68580429	68581429	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021475, intron 1 of 13)	intron (NM_021475, intron 1 of 13)	1143.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	4.00532203717927	4.26361484663134	3.90309626353475	3.82117172523598	3.64143171531552	3.81736288925068	-0.988497533559304	0.0609900016988395	0.320009910444621
Merged-chr16-65406129-4	chr16	65405692	65406692	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114437.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	5.08869346782702	4.84349576333441	4.98636358412781	4.78059258995036	4.38212659492601	4.50203492193103	-0.954214916594615	0.0230794015178404	0.177619886406759
Merged-chr10-121458262-5	chr10	121457742	121458742	+	672.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	18008.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.22104874829142	6.06590896606948	5.9867837735205	5.71121935352206	5.7633412061449	5.66524489315743	-0.673298901515285	0.0253315662662764	0.188532107860852
Merged-chr13-55693015-4	chr13	55692483	55693483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181278)	promoter-TSS (NM_181278)	-141.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	8.13145542432299	7.86016879737296	8.01168647751838	8.11956983760504	7.82521120616034	8.03893421207452	-0.0117157802149197	0.958959943820045	0.990174309444982
Merged-chr2-157133906-4	chr2	157133405	157134405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	BC1_Mm|scRNA|scRNA	1317.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	5.71382912819268	5.8441321604474	6.34549025377313	6.403789332057	6.86138790237301	6.34878080072453	0.968385848705355	0.00403281197083414	0.0522357127131331
Merged-chr1-91056623-4	chr1	91056142	91057142	+	809.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	3198.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.92566763215858	4.77802168307396	4.6862498117223	4.90231351176012	4.9388109204987	4.62585866817102	0.0762592478691732	0.850068792252439	0.964801567373977
Merged-chr6-52486786-3	chr6	52486308	52487308	+	725.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5643.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	5.78263310924983	6.0035317598732	5.66134748856724	5.8122538669541	5.5729933035968	5.9024339310612	-0.130528322225286	0.687376718105884	0.91713422959374
Merged-chr5-3894120-2	chr5	3893620	3894620	+	646.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013023)	promoter-TSS (NM_001013023)	-187.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	3.13439080240958	3.02338899581457	3.2875411001085	3.30654736555595	2.90969469924522	2.94567913275025	-0.355399829840118	0.608012286245246	0.884838153491064
Merged-chr3-97659619-2	chr3	97659119	97660119	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	intron (NM_182997, intron 2 of 7)	1407.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	3.08572737279029	3.03384227581251	3.31622946839415	3.09469666395355	3.06956396291961	2.85735123506206	-0.576001056363958	0.403116619732111	0.778555989477741
Merged-chr8-22814456-4	chr8	22813959	22814959	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8805.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	3.6732520793018	3.55582777873629	4.012578751824	3.55796628993221	3.2601288129696	3.46129200142341	-1.20958907483234	0.0474207631317319	0.275813425042999
Merged-chr16-95709807-2	chr16	95709307	95710307	+	964.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011809, exon 3 of 10)	exon (NM_011809, exon 3 of 10)	7400.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.89401175882871	5.2642258578346	5.12336812725521	5.00694753399107	4.72224296314589	4.98257076442911	-0.434445755031899	0.267953313794841	0.665131091979389
Merged-chr9-21125729-5	chr9	21125259	21126259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	ID_B1|SINE|B4	5516.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	6.67754428724221	6.57667866083733	6.61019506181982	6.3860684515062	6.50453503880652	6.84923193800646	-0.0588882262286779	0.831761332987149	0.960478468368024
Merged-chr10-118883530-4	chr10	118883070	118884070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14667.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.2865753127468	5.97744694786397	6.40429165995963	6.25826508859167	6.11552624282807	6.06256310647725	-0.129450078222259	0.665343096256054	0.907787360308422
Merged-chr9-44084857-4	chr9	44084368	44085368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-52.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	7.61786427697115	7.63874638392078	7.30710335944874	7.63220911449741	7.49722097596549	7.23117149757708	-0.0975223484896654	0.697508312295697	0.920001135761281
Merged-chr6-72142246-2	chr6	72141746	72142746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 4 of 7)	exon (NM_011375, exon 4 of 7)	-19049.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.04098973523244	6.0394881433544	6.12813273100123	6.11467735197271	6.32705949986016	6.05606562925901	0.194768694722811	0.500132290286084	0.834921806675451
Merged-chr7-45053836-2	chr7	45053339	45054339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-958.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	7.76369365171819	7.78417693703936	7.87821889225768	7.89592503134422	7.89308288867206	7.91892526356516	0.136346522588704	0.51753031838386	0.844597786295928
Merged-chr2-90903670-3	chr2	90903178	90904178	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026688, intron 2 of 6)	intron (NM_026688, intron 2 of 6)	1043.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	4.5228280818561	5.04643715342737	4.75886755623456	4.71287476119027	4.79372615279573	4.57887351282983	-0.217730863598735	0.612976641664452	0.886978895339216
Merged-chr11-3175756-4	chr11	3175193	3176193	+	983.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B2_Mm1t|SINE|B2	17770.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.72090344565943	7.29611351589672	7.75256251532038	4.74829140254337	4.3973789541432	7.17212699024923	-1.74300650173535	0.309533639218331	0.705132646664812
Merged-chr19-6085729-4	chr19	6085224	6086224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024231)	promoter-TSS (NM_024231)	627.0	NM_026410	67849.0	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	6.27644832914004	6.21169139158469	6.32055925872955	6.35216496774253	6.90449148946568	6.45688241133334	0.550510370653919	0.0652828125283533	0.333070836032818
Merged-chr13-49102390-3	chr13	49101901	49102901	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 3 of 29)	RMER16_Mm|LTR|ERVK	45927.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	2.7778171196076	2.63624149002595	2.89874416990554	2.55489143200813	2.70337922734948	2.9703974686147	-0.115152520370418	0.880313977174814	0.972493267651278
Merged-chr9-21030328-4	chr9	21029818	21030818	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023892, intron 2 of 2)	intron (NM_023892, intron 2 of 2)	945.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	5.41590757875631	5.38243286731789	5.50920864028444	5.69393112695839	5.67031574300654	5.92475241344963	0.612650758755438	0.0580951731053793	0.311409020533947
Merged-chr8-4105843-2	chr8	4105334	4106334	+	662.583374	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_026956)	promoter-TSS (NM_026956)	-70.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	3.98103998249955	4.35006650178227	4.23881836047913	3.54299655363177	3.62972186296767	3.89242957730679	-1.60645476643574	0.00323270733525147	0.0446377550533695
Merged-chr8-106152515-2	chr8	106152015	106153015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	B1_Mus1|SINE|Alu	2161.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	8.0323661028848	8.4628221120196	7.7527972023236	8.09399069509008	8.51132628246899	8.04115740308645	0.160664588873257	0.568145580671108	0.868528648409077
Merged-chr19-12009241-2	chr19	12008741	12009741	+	862.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27499.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	3.95961710625009	3.81629349559567	4.13039663093004	4.02352108448586	3.8132032469237	3.70273076176268	-0.344467552777809	0.514455289100761	0.843107848235413
Merged-chr9-88548158-5	chr9	88547695	88548695	+	905.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001142943, exon 1 of 6)	5' UTR (NM_001142943, exon 1 of 6)	175.0	NM_001142943	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	5.04691072828823	5.01594653146674	5.03129905568784	5.06840769351449	5.16885636463238	5.09595710253433	0.176488852961566	0.624157753616688	0.89186217823426
Merged-chr4-101070952-2	chr4	101070455	101071455	+	584.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	intron (NM_183024, intron 1 of 11)	1917.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.90256305982949	4.25080111534326	4.14164698853154	4.17093540876206	4.34496769350133	4.25596516421921	0.429121180296725	0.373867188329877	0.757604135369744
Merged-chr6-85402937-4	chr6	85402442	85403442	+	840.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20944.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	3.00621757748509	2.86241604039345	3.19847804101564	3.03480090398841	2.95357696020384	3.26917852580187	0.282096993198041	0.680869243430502	0.914504446345046
Merged-chr3-85574039-4	chr3	85573544	85574544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144896)	promoter-TSS (NM_144896)	-85.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	7.41780701934696	8.00599636706187	7.61953253036061	7.63767972219821	7.78095181239015	7.62910206738816	-0.0334399061080817	0.897339617824876	0.975985711932503
Merged-chr14-30630611-2	chr14	30630111	30631111	+	807.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4403.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.17804234198853	4.21606778563569	4.36163129024021	4.29354978983511	3.91935228846386	4.11589764945039	-0.3784349235994	0.434558205984011	0.798470116010105
Merged-chr8-56296513-2	chr8	56296013	56297013	+	811.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	1961.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.02412495786971	6.19482046492194	5.65951947277656	6.4785639087515	6.42985906496534	6.11648598085147	0.613204930317295	0.0548371121787022	0.30085703788699
Merged-chr16-5202809-4	chr16	5202318	5203318	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027804, intron 1 of 8)	intron (NR_027804, intron 1 of 8)	1194.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	5.64106447430909	5.38377410161153	5.61943312490844	5.30293998225092	5.21998575269758	5.77992910734681	-0.203749391969294	0.576063502786438	0.871496930818991
Merged-chr5-65515050-4	chr5	65514478	65515478	+	865.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22143.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	2.97888810173008	3.01279137463631	2.83161146590076	3.01646201931627	2.75779628913044	3.25636775749433	0.342183451645553	0.637408473490124	0.897347930665099
Merged-chr1-111864937-4	chr1	111864424	111865424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081316)	promoter-TSS (NM_001081316)	-6.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	5.13172079453709	5.23591799106797	5.04335367052728	5.04758106038568	4.76945994208825	4.9648532679451	-0.468401969142731	0.212946656403383	0.605566144429689
Merged-chr17-48316124-4	chr17	48315640	48316640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177083)	promoter-TSS (NM_177083)	-22.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	6.35523290122544	6.22225061109775	6.33826413868323	6.32152146360091	6.36676809412698	6.08258540111437	-0.0526045930545703	0.851622569191816	0.965314553418056
Merged-chr2-53200706-4	chr2	53200194	53201194	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022989, intron 2 of 3)	intron (NM_022989, intron 2 of 3)	8610.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	4.15172635354903	4.44505056449564	4.57822552805762	4.4386126547036	4.64593087536261	4.79238259727866	0.578373523153492	0.200262185710584	0.589262190319174
Merged-chr17-24205584-4	chr17	24205086	24206086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-24.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	6.04415053537728	5.90804195813452	6.21769941333317	6.2206902604616	5.82338103083142	5.83019833240141	-0.14297447344658	0.651473164460355	0.90284603967984
Merged-chr6-34878175-4	chr6	34877673	34878673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347101)	promoter-TSS (NM_001347101)	-108.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	7.27976412014203	7.38582488824029	7.05737387143094	7.20854447142671	7.28322288956729	6.97595158367492	-0.127129285984083	0.613484990991948	0.887273066396938
Merged-chr10-8746387-2	chr10	8745886	8746886	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	139684.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.56576612731905	3.5293740319365	3.78844086475312	3.62001445837937	3.56457616816116	3.6573333157837	-0.0468430935364617	0.932871540067082	0.98531867876889
Merged-chr7-142449357-4	chr7	142448857	142449857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6889.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	3.30649437981204	3.31310160163235	3.35069376361717	3.38767603266029	3.73152561696022	3.6900271213402	1.0867954972796	0.068289839162745	0.341810691593701
Merged-chr10-79986274-8	chr10	79985751	79986751	+	916.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B1_Mur3|SINE|Alu	-1991.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	6.8780287435339	6.89544883968891	7.01823104189966	7.05365605846746	7.3805383764296	7.10217892025655	0.404661784110281	0.106853003838533	0.436347896711652
Merged-chr8-88651377-4	chr8	88650873	88651873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 1 of 12)	MTB|LTR|ERVL-MaLR	4026.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.85723273423935	6.72260411110199	7.13894103432484	6.6612535926688	6.70872477766413	7.01396918751844	-0.175075411568497	0.524626179148085	0.848752537154544
Merged-chr3-9647205-4	chr3	9646711	9647711	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37126.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.96085098023547	3.86173987658576	3.68355033162352	3.63619547251771	3.76856792185962	3.58680512137424	-0.569790358988671	0.298310191751159	0.69500092474273
Merged-chr15-80026389-1	chr15	80025889	80026889	+	566.0	f0_balb.idr	Intergenic	Intergenic	-11581.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.10582955300709	3.73932193037832	3.58884345904474	3.58464712691332	3.30270611201591	3.42708668622048	-1.39113333725025	0.0217568518579846	0.170803295537238
Merged-chr7-19749007-2	chr7	19748507	19749507	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	566.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	4.98684616496625	4.94474098443312	4.8098245908656	5.42080238295319	5.05597221906751	4.87728148730431	0.471839201977811	0.233280343690656	0.629682827928185
Merged-chr14-25740457-2	chr14	25739957	25740957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	28399.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	2.51758763085824	2.48062065109943	3.09451146545223	2.42682956191895	2.52944947333986	2.59862119467684	-1.11849759153019	0.186159048050216	0.570693868232769
Merged-chr15-81837267-2	chr15	81836731	81837731	+	913.783325	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21095.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	6.41531853208394	6.82201820376448	6.5119761027893	6.23890187781207	6.09593943539115	6.06748154658696	-0.759759395537148	0.00874563669241643	0.0917777375031294
Merged-chr13-41437586-3	chr13	41437089	41438089	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	49771.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.13396057443833	3.22884686829354	3.51743864821427	3.15572240064773	3.18512652248522	3.38376355823538	-0.228320065237221	0.721811114973965	0.928606209603791
Merged-chr8-116634839-2	chr8	116634339	116635339	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	RLTR17B_Mm|LTR|ERVK	98152.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	3.90503967451562	3.92310945297967	4.1708641444031	4.39576063563632	4.74827833489014	4.62196959029744	1.64189019455132	0.000518599781698181	0.0107879126588856
Merged-chr5-90880647-2	chr5	90880147	90881147	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10598.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	4.35742588481704	4.1808106538482	4.05007873255079	3.90565833949295	3.75373949368884	3.63195583881661	-1.32095469915822	0.0122110055128037	0.115618268856324
Merged-chr19-12488298-3	chr19	12487770	12488770	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 2 of 8)	intron (NM_172442, intron 2 of 8)	13726.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	2.51258964564542	2.34046430804735	2.593214792234	2.42110204775687	2.39380403761936	2.54305140183249	-0.194181871172303	0.80984946286629	1
Merged-chr17-33818205-2	chr17	33817679	33818679	+	1000.0	f0_balb.idr|f1_balb.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6383.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	6.63207091409696	6.43045968438829	6.53302323191558	6.18983220670752	6.38857603108598	6.04829964531508	-0.49910184589826	0.0791242341438608	0.371786244759768
Merged-chr10-51452961-2	chr10	51452461	51453461	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-27651.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.73468877134065	7.2183400313551	6.98079721239783	7.00292787488861	7.36218799529002	6.85094970686799	0.161831452552676	0.575407893176567	0.871089076039513
Merged-chr19-10843682-4	chr19	10843161	10844161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	MIR3|SINE|MIR	1117.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	8.22544451787467	8.25411298248639	8.01581893415121	8.44510310075687	8.59804074543739	8.3839597736369	0.430442235565008	0.0445592148990732	0.266063660086566
Merged-chr6-89421720-4	chr6	89421228	89422228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59115.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	6.15493225735907	6.13418611281087	6.00837699957064	6.00815579189602	5.93642441659957	5.74106392872834	-0.342821308586806	0.247597807753646	0.644561473815517
Merged-chr10-9717183-4	chr10	9716677	9717677	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32455.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	4.79674185009958	4.55489567031415	4.8798437941695	4.8083693051532	4.72925609039017	5.11024117225284	0.312720863300775	0.448046986058464	0.806987377046511
Merged-chr11-17008693-4	chr11	17008204	17009204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019549)	promoter-TSS (NM_019549)	14.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.66201944024125	7.54505768089304	7.41787923765376	7.21275119062106	7.69859016616545	7.2213042637085	-0.203394397670069	0.439665461320191	0.801272175253093
Merged-chr2-91069741-2	chr2	91069241	91070241	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	intron (NM_001290765, intron 1 of 9)	574.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	6.47428404728977	6.03816281624068	6.28620376697911	6.2963036554129	6.32628382121641	6.06762825941632	-0.0597266761111107	0.842283918610335	0.963006998086329
Merged-chr18-82534591-4	chr18	82534078	82535078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-19885.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.32073202751211	3.41792875475887	3.26118831806358	2.86105122364685	3.13915367784921	3.21873827437494	-1.09087705111933	0.108101692401713	0.439226799226611
Merged-chr10-118814408-2	chr10	118813908	118814908	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	54495.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.13643511205177	5.85013331592125	6.379288198876	6.21165405422761	6.58867062986605	6.57550352696772	0.565772626255693	0.0694483655014954	0.344832910929395
Merged-chr2-30624092-4	chr2	30623601	30624601	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29057.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.98169975599793	5.04614701461971	4.97445211024004	4.54926298516676	4.72284681106197	4.52624340130224	-0.889355226413884	0.0262223324677152	0.192289401601626
Merged-chr9-64790844-4	chr9	64790343	64791343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-20168.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	6.67263768445881	6.53314683187242	6.12714217985659	6.05567927058115	6.457161949226	6.33694146086487	-0.289262946273873	0.351198506982091	0.739086949987195
Merged-chr15-100639993-2	chr15	100639493	100640493	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	3.5764019280613	3.24767107823829	3.76642029863847	3.28508319894575	3.21428420806626	4.00993188200015	0.0293589499755038	0.96609622154014	0.992210797624133
Merged-chr17-84180916-5	chr17	84180372	84181372	+	863.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7075.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.30939724518154	5.06568133477356	5.26676261785521	5.10670602634004	5.01269781495097	5.10263215977048	-0.299258494288573	0.407734953690558	0.781867856440909
Merged-chr6-57824579-4	chr6	57824090	57825090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	CpG	535.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	8.08699142235504	8.3762211813044	8.0200022746906	8.10856879651986	8.15957967368021	8.09765312252167	-0.0740631727772673	0.73928046983139	0.934210875888137
Merged-chr17-73930153-2	chr17	73929653	73930653	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	L1_Mus3|LINE|L1	20043.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	3.6633018989045	3.85423073818972	3.89434383968243	3.84908427433812	3.97113444891921	4.14725817646963	0.575006656169087	0.268411161312129	0.665530987612523
Merged-chr6-38360243-4	chr6	38359727	38360727	+	930.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5624.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	3.44576398319402	3.69860852251157	3.38056229503815	3.85234197487705	3.79917164114185	3.79011742613444	0.986160600221744	0.0851484424942014	0.386252608791229
Merged-chr15-84925061-2	chr15	84924561	84925561	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	intron (NM_016714, intron 1 of 7)	1633.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	4.01614406658398	3.73291498918898	3.91589294606341	3.93902203333744	4.06988736869325	3.88414860559607	0.243530907428668	0.635917210402159	0.896837264160966
Merged-chr16-90744715-3	chr16	90744162	90745162	+	574.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	6338.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	4.478024633838	4.84536975022603	4.592101104285	4.33109670823642	4.54598886429872	5.16952938357714	0.17107814453594	0.725014214338946	0.929494518692742
Merged-chr4-142098525-4	chr4	142098038	142099038	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14234.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	7.10452472734514	6.62749654179544	6.69635631108634	7.13110746711266	7.25715767926693	6.86683574389802	0.411873255727554	0.145152703469159	0.508242137277471
Merged-chr9-74988214-3	chr9	74987723	74988723	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	12112.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	3.69746112086724	3.95161099568902	3.71606492444919	4.24952303330675	4.06858863941588	4.00032110304784	0.944373295673502	0.0697021032345391	0.345567209627193
Merged-chr14-106193336-3	chr14	106192836	106193836	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	87138.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	3.81848287593256	3.60766238027902	3.69698379164581	3.62525849203997	3.30548448747427	3.71576802386913	-0.554836368450767	0.341935705621901	0.731142095278512
Merged-chr6-117906779-4	chr6	117906289	117907289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	7.0	NM_133834	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	8.40196108096933	8.51581002641718	8.10512441482927	8.14615598213873	8.20650269348115	8.16092810275434	-0.261615030042505	0.239806851027354	0.636770540094307
Merged-chr1-89552649-4	chr1	89552160	89553160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97849.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.77187090058408	5.69499585679141	5.67657818445369	5.41428690495242	5.20233250546966	5.26582931065739	-0.807569496038151	0.0141929335473139	0.128017952802699
Merged-chr4-129580369-2	chr4	129579812	129580812	+	627.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-1732.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	3.89852128226029	4.07921062349721	4.26746661675066	3.67259672925535	3.25886218504764	3.68551331753456	-1.81702108567898	0.00233280447483694	0.0347427948348366
Merged-chr8-94486098-3	chr8	94485601	94486601	+	652.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 11 of 48)	L2a|LINE|L2	13338.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	3.84028076012209	3.91173243462085	3.98311035792655	3.9898510870695	3.79971451567586	4.18674055210326	0.247441341449217	0.629867378102513	0.894408596595842
Merged-chr10-37364690-4	chr10	37364185	37365185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-225759.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.3649098347058	4.18094086476256	4.0710732167579	4.31756827980346	3.96238315448759	4.41244019100267	0.0516566101425712	0.916796254349026	0.981431795618389
Merged-chr2-120424499-3	chr2	120423950	120424950	+	963.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20334.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	7.0993464686137	7.21402936118363	6.70862510033554	7.06607030035136	7.05994871866828	6.98255028032311	0.00221357503883957	0.993308890656005	0.998651348330892
Merged-chr15-98835326-2	chr15	98834826	98835826	+	726.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033276, exon 52 of 55)	exon (NM_001033276, exon 52 of 55)	-3818.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	2.03023097325483	1.96579571056935	2.44653781601195	2.3099772840088	2.09054984414331	2.45994488764839	0.87446283940304	0.370235197088349	1
Merged-chr7-35123400-6	chr7	35122818	35123818	+	844.3541869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4025.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	3.8304908888463	3.8840408844791	4.00258991926735	4.07251998618025	3.83679962843899	4.24869190213205	0.450977741768983	0.379460951546672	0.761896589033286
Merged-chr13-55427447-2	chr13	55427004	55428004	+	759.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021489)	promoter-TSS (NM_021489)	-700.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	2.89124868758664	2.77981654103238	2.98856249182407	3.1470268355135	3.27425695143451	3.45139495314203	1.89495808636114	0.00646758974973894	0.0737805330266353
Merged-chr11-20633545-2	chr11	20633045	20634045	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	1568.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.9851589611944	5.15967454284981	4.77176244130391	4.75290383650133	5.04526374974274	4.99059728509544	-0.116437793621542	0.768974372400795	0.942983923980385
Merged-chr2-145808528-4	chr2	145808029	145809029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	22413.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.03239041137978	5.69834997463189	5.78019782224472	5.29477178883962	5.53861494431186	5.63336505234118	-0.652959826548956	0.050695384002897	0.286780985254813
Merged-chr11-107479429-4	chr11	107478943	107479943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-85.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	8.15397527699811	8.06238685999686	7.73170714846361	7.84479559026428	8.10373093970888	7.76104878654491	-0.119028700727894	0.625965551555102	0.892770422921587
Merged-chr4-33241057-2	chr4	33240557	33241557	+	662.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7730.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	2.72729092758654	2.65260473579452	2.91661148934757	3.01948520587955	2.54457441228259	2.80863837143845	0.191972267000307	0.803787944547381	0.953557286986578
Merged-chr4-53114787-2	chr4	53114287	53115287	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	MIRc|SINE|MIR	45108.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.92557047501764	4.62887700960304	5.24209042562839	5.04955896104813	5.09993582861141	5.015904622532	0.24721741118643	0.540890052293665	0.856582937501506
Merged-chr11-95386788-2	chr11	95386288	95387288	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016752, intron 3 of 8)	ID_B1|SINE|B4	1932.0	NM_001357797	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	1.95881483849353	1.97368074680291	1.90353230317365	2.22421502344764	2.03716937036611	2.32021055062145	1.97151577559144	0.0460411629360989	1
Merged-chr7-4877023-4	chr7	4876523	4877523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101598)	promoter-TSS (NM_001101598)	-30.0	NM_001101598	664994.0	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding	6.28718414865167	6.53045077461717	6.10160184844477	6.48705774830377	6.50622280061453	6.22991769673756	0.150394008615303	0.608154403033155	0.884905334748321
Merged-chr8-31032324-2	chr8	31031824	31032824	+	889.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57203.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	2.81527818547902	2.67302741789396	2.98679656142405	2.94117340440651	3.1916652975217	3.00022006570472	1.10320287752086	0.125458497493201	0.47405434173808
Merged-chr8-70864917-4	chr8	70864457	70865457	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7949.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	5.69294998179965	5.15348058717192	4.75887824487148	5.03283874411176	4.73682892368028	4.64903816082931	-0.94760664405466	0.0375586880888349	0.239569437983578
Merged-chr3-57697356-3	chr3	57696805	57697805	+	775.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-4768.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	4.03896935736698	3.99928646443117	3.91590453462544	3.71655612106624	3.76338409793854	4.1247051292378	-0.361630310780412	0.489900904169895	0.829980359087456
Merged-chr15-77236194-3	chr15	77235690	77236690	+	791.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	9418.0	NM_001358772	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	2.95127480145029	3.07287328065387	3.168485254008	2.92141388722672	3.0058326212048	3.01092898302718	-0.38488741539666	0.566236505556135	0.867257533499542
Merged-chr12-35019023-3	chr12	35018573	35019573	+	704.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28116.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.99915054979669	4.83687472935314	4.56463796420701	4.77393432998918	4.4677841295525	4.87158979001854	-0.266901976853346	0.534310043814543	0.853068627162717
Merged-chr4-9656871-2	chr4	9656371	9657371	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	12291.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.66023240821751	6.95290724217516	6.26632576531224	6.9403893000218	7.14487525024285	6.82520761994637	0.481890226369505	0.108718185327903	0.440527039920339
Merged-chr13-45416840-3	chr13	45416337	45417337	+	819.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27095.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.97326479250518	3.95824098090143	3.94171814108917	3.84863268232354	3.78643375759888	3.86131265906265	-0.404175699404586	0.422894243678358	0.791617381565967
Merged-chr12-101995064-3	chr12	101994656	101995656	+	934.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 8 of 14)	(CA)n|Simple_repeat|Simple_repeat	19182.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	3.0681667780316	3.07351851024959	3.50244990259211	3.81543889789094	3.93149977534111	4.1489968087678	2.94891439849946	1.32984185672174e-05	0.000512521913914326
Merged-chr9-88437659-2	chr9	88437159	88438159	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	1292.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	4.00701807521808	3.88588503803067	3.9064061897329	3.94973887090763	3.55357808829872	3.771123964621	-0.545021338201361	0.311269622423084	0.706465219571547
Merged-chr8-103578316-3	chr8	103577816	103578816	+	853.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-25483.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	5.24613332046646	5.14842798855569	5.41168424716226	4.80127380398838	5.10934543148021	5.17428926494433	-0.474610007896885	0.206031913620385	0.596644693164169
Merged-chr1-37315213-4	chr1	37314692	37315692	+	917.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	15354.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	5.58159154089091	5.7602497342867	5.23370447958599	5.53144239722922	5.5128328384667	4.99532732538242	-0.328058547148731	0.396107166622005	0.773332291042782
Merged-chr19-29462662-4	chr19	29462140	29463140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	51721.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	7.64714732663235	7.63302831784988	7.39907733161876	7.5997890528694	7.68214274374407	7.40090829549122	0.00342003675964292	0.988403917004883	0.997390908272651
Merged-chr10-80571639-2	chr10	80571139	80572139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	5657.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	3.87073827492415	3.65979217298584	3.82715100562024	3.53666943158138	3.33090523527994	3.79892695130838	-0.788945859485443	0.175308039155735	0.555104320042256
Merged-chr11-120800239-4	chr11	120799734	120800734	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3839.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	4.2811861954727	4.00250791747914	3.81235867672554	3.57428160016275	3.48459657511854	3.54723365090527	-1.74084607955922	0.00211314966819111	0.0322034720862354
Merged-chr5-65537159-4	chr5	65536656	65537656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310618)	promoter-TSS (NM_001310618)	-89.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	8.64552958702274	8.37691421256589	8.48037752124191	8.46677508541649	8.44936293407998	8.45353896615635	-0.0695978691881507	0.7366312251259	0.933215757921375
Merged-chr8-61929031-4	chr8	61928535	61929535	+	719.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293783, intron 1 of 37)	intron (NM_001293783, intron 1 of 37)	948.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	7.00960855848898	7.2197346184719	6.81980192262806	7.17572141933015	7.36606388947561	7.01161622139095	0.248971372561072	0.344165408924543	0.732937022568421
Merged-chr12-84317467-3	chr12	84316980	84317980	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252582, intron 1 of 7)	CpG	621.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	5.75056030227129	5.8527983662024	6.09898073555868	5.99676366370375	5.71696837690316	5.8179245534714	-0.0937411811585209	0.766415038188199	0.942467872936068
Merged-chr2-124712998-4	chr2	124712490	124713490	+	832.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	59409.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.65998074002742	4.56543016450505	4.71706255387855	4.81182281462753	4.41662035959075	5.21115699728552	0.44886569631344	0.325535242379197	0.718159390122652
Merged-chr3-89963495-4	chr3	89962962	89963962	+	766.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081182)	promoter-TSS (NM_001081182)	-130.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	3.48509448136732	3.24950174004714	2.99889858671028	3.31541051135409	3.13187144071591	3.37639882527617	0.0385570313820935	0.954312423076938	0.98952519221137
Merged-chr5-120513023-4	chr5	120512511	120513511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	1819.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	7.54306238133878	7.95328341865026	7.95148136030253	7.88699498113597	8.20357560074892	7.98536837956583	0.295689931043073	0.229249169564382	0.624749364077556
Merged-chr15-79141289-4	chr15	79140793	79141793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310579)	promoter-TSS (NM_001310579)	-32.0	NM_027231	69833.0	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	4.6529372294983	4.54178233399375	4.77812758838622	4.76281643238911	4.541774419497	4.61072610304654	-0.0349059160385393	0.932872081948063	0.98531867876889
Merged-chr10-7039038-2	chr10	7038538	7039538	+	670.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302795)	TTS (NM_001302795)	-15853.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.03692467504901	3.6143413561429	3.79878450738382	3.33113444643461	3.3160781290827	3.31740320756028	-1.87961932338005	0.00214187370512681	0.0325102202218519
Merged-chr13-5869501-2	chr13	5869001	5870001	+	658.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8012.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.14742338069952	6.14195532104796	6.20482825356475	6.26911541323035	6.12342700831959	6.02446610036509	-0.0269886256076239	0.924137620005075	0.982905462980868
Merged-chr9-21017762-3	chr9	21017242	21018242	+	926.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	B1F2|SINE|Alu	1802.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	5.35973951283615	5.17908726415556	5.20554499382094	5.45314984681844	5.27473341882115	5.84027863103891	0.542432574316269	0.140265359278645	0.50056613548025
Merged-chr4-107013706-2	chr4	107013206	107014206	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 5 of 16)	intron (NM_198438, intron 5 of 16)	53160.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	2.86665593514531	2.66231950803321	2.89375957927453	2.74844624635728	2.41883543497566	2.9080995358694	-0.547916544657466	0.497943864968952	0.833827995901319
Merged-chr6-125445476-4	chr6	125444963	125445963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85a|LTR|Gypsy?	49297.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.81990745547525	5.3463325323202	5.40454064086101	5.78895819033724	5.97902167470748	5.4691365764186	0.415013325682568	0.251891131709008	0.649428218365646
Merged-chr9-124054600-1	chr9	124054100	124055100	+	568.666687	f0_balb.idr	Intergenic	Intergenic	32629.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	5.61333163720684	5.98142062469406	6.12575921026035	5.77575168062514	5.93911314433907	6.14531279980904	0.0694104770960475	0.832957320377012	0.960886076721619
Merged-chr13-80960030-4	chr13	80959522	80960522	+	785.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4052.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.68576986942851	3.5688802275677	3.65880956052104	3.52995024142996	3.98077697930238	3.88088741143018	0.586272295152081	0.296094223749621	0.692837106451674
Merged-chr8-71669632-2	chr8	71669086	71670086	+	748.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	RSINE1|SINE|B4	2171.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	2.64398224341737	2.4592040856696	2.8096370733293	2.67583065300267	2.67301226923313	3.05166885083518	0.87476800327639	0.266894427813104	0.664374762344038
Merged-chr3-119783134-6	chr3	119782714	119783714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019550, exon 1 of 14)	5' UTR (NM_019550, exon 1 of 14)	174.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	8.16810858864369	7.96448863165275	7.84093463235084	7.92731466142535	7.54026664738875	7.58050850365667	-0.438531105354594	0.072627130081762	0.354022158163049
Merged-chr9-78481766-4	chr9	78481313	78482313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-89.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.30462310985212	8.74843828517543	8.30134166697123	8.29474823440951	8.43605695935178	8.2557705434545	-0.195991413492992	0.407162753431227	0.781346826280109
Merged-chr12-102454758-2	chr12	102454253	102455253	+	922.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14381.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	7.33835085883354	7.64532428518237	7.31095430812088	7.42302611527925	7.89571106109613	7.3797029114106	0.222943402545118	0.409948500874475	0.78304118380362
Merged-chr1-125426522-3	chr1	125426014	125427014	+	878.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	URR1A|DNA|hAT-Charlie	9213.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.47064759751743	5.55581719438556	5.31161443695537	5.62432027087208	5.45757882915674	5.31004528268095	0.0342594374803925	0.919850423348281	0.982120898917633
Merged-chr3-108146159-4	chr3	108145707	108146707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-55.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	7.32809332569474	7.3493877843064	7.23044536045754	7.16459080792142	7.3763561738894	7.15318370533515	-0.0960334608524211	0.684773849641936	0.915996760353132
Merged-chr3-126661192-4	chr3	126660677	126661677	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	64226.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.16353280626509	4.24046241772532	3.82368334094461	3.63484837873622	3.56625760900924	3.78823363481072	-1.40506350441517	0.00977696476282672	0.0989535319480711
Merged-chr9-121277736-4	chr9	121277234	121278234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-562.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	5.87228825517495	6.13914929469634	6.27203880191382	6.03109006928336	6.1110029476419	6.08713937380823	-0.0334265851074514	0.910836577200855	0.979969158480567
Merged-chr1-156719124-4	chr1	156718630	156719630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-220.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	5.4154215954845	5.12951237411529	5.4580336357952	5.50033384546043	5.30572329367217	5.21045414943021	0.0233974563050614	0.947653789404713	0.988008807662239
Merged-chr8-3620794-2	chr8	3620294	3621294	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195244)	promoter-TSS (NM_001195244)	502.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	5.68759169370693	5.92593494973352	5.50604456353563	6.23048998759749	6.12477744051804	5.53899642219838	0.49854804557732	0.163176137942892	0.536867626448843
Merged-chr12-70968634-4	chr12	70968156	70969156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5967.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	8.05790978730056	8.1423279984821	8.07798079106982	8.19248759991826	8.33856785359061	8.19515967223004	0.215243063808872	0.298353490269023	0.695033763938461
Merged-chr11-3193184-4	chr11	3192800	3193800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	CpG	163.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	7.75452947125686	8.30613559725823	8.57480665275857	6.94222395009018	6.60713676274767	7.86341463725152	-1.41307132128381	0.0269982126935381	0.195634179378553
Merged-chr18-13007766-4	chr18	13007262	13008262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	772.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	5.03586898552317	5.39805848492573	4.76498149440356	5.05070370483	5.20440467289372	5.0303437668989	-0.0102853228505107	0.97966573692094	0.995316120471372
Merged-chr15-81745105-4	chr15	81744564	81745564	+	854.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081016, exon 1 of 23)	5' UTR (NM_001081016, exon 1 of 23)	216.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	3.8749913897969	3.47931003263121	3.6403034016404	3.58322213863298	3.60649145426128	3.54734700796328	-0.333443248802399	0.560105000369843	0.865168135946323
Merged-chr14-16243308-4	chr14	16242812	16243812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	19.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	8.81223965944088	9.19097025348205	8.6141127387096	8.85609055571018	9.12093701009726	8.61141318231681	-0.0213729399582667	0.933780418401339	0.985602489494737
Merged-chr15-73069060-3	chr15	73068503	73069503	+	822.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7799.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.6165619500846	4.67823023068183	4.80358192005618	5.13003375983871	5.2150717608018	4.79108201054519	0.830441576834714	0.0367977664203982	0.236255289221334
Merged-chr11-77494079-6	chr11	77493545	77494545	+	789.532837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	633.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	4.90626303326661	4.81977051022103	4.65700430038852	4.76699868084394	4.77952969418211	5.05591869160272	0.133562825093981	0.738518577790151	0.934032187674406
Merged-chr18-80690117-4	chr18	80689636	80690636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	18037.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.90941312647538	6.5965427789827	5.92710379329649	6.26770680897903	6.31114897793797	5.7936469673088	-0.649120637097823	0.079968626194176	0.374032009464025
Merged-chr2-153122902-4	chr2	153122406	153123406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14438.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.46313884746671	6.529969709908	6.13811630704484	6.27699211484545	6.47636500931126	6.4431918405019	0.0051439746180773	0.985616831047051	0.99691465847822
Merged-chr7-25247012-2	chr7	25246512	25247512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	3746.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	3.07420028601561	2.87248158908611	2.93517165176483	3.20903664655831	2.85009574000173	3.18653376732512	0.55847001372309	0.424843998429527	0.792848465017231
Merged-chr13-97567847-4	chr13	97567388	97568388	+	976.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	7888.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.95122010694183	5.19497097241797	5.11616093545961	4.85753657801303	5.05802100535839	5.07968130161523	-0.18993529851487	0.612323771311201	0.886694626735313
Merged-chr18-75304666-4	chr18	75304171	75305171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7342.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.51195616182875	4.38246845759302	4.78281340216196	4.04216718304044	4.2735218150684	4.59534199129237	-0.628623964959902	0.190255343174592	0.576501112519869
Merged-chr11-117317158-4	chr11	117316645	117317645	+	899.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-14570.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.4794358817849	5.29468044683532	5.37252053058483	4.87229598694189	4.75068780308552	4.9796366396439	-1.10266688026952	0.00258665704861259	0.0376342996504558
Merged-chr11-73177110-4	chr11	73176609	73177609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	26.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	7.96196549112095	8.38280463528788	8.23648887962573	8.0224003109825	8.1474722581151	7.91908654118163	-0.238536254731497	0.306317226125978	0.702498311876148
Merged-chr2-14107883-2	chr2	14107383	14108383	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011484, intron 2 of 13)	intron (NM_011484, intron 2 of 13)	33783.0	NM_011484	20844.0	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	4.63317541762019	5.06133935934222	4.50208473810519	4.24090390853645	3.92910390529482	4.34750240604507	-1.51408163817887	0.00182161730994799	0.0287233528759053
Merged-chr4-136148714-7	chr4	136148204	136149204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4882.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.38305622387119	5.94088554539786	5.63792255176643	6.22196229182979	5.81870152027601	5.86833714065506	-0.0912128464485241	0.797707243379452	0.951799370596145
Merged-chr2-31670685-4	chr2	31670182	31671182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144886)	promoter-TSS (NM_144886)	-33.0	NM_144886	227715.0	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding	3.99746919794551	4.13542914815595	4.36347196422918	4.41659468125073	4.34214798717953	4.20861007276879	0.447572964999353	0.34231519178503	0.731283521951228
Merged-chr16-38341847-4	chr16	38341351	38342351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081025)	promoter-TSS (NM_001081025)	9.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	3.96550925017314	3.65424069634226	3.64335427452854	3.84441705718131	3.71450068530036	3.35519313755578	-0.352826366873032	0.558429105499143	0.864672466604129
Merged-chr8-26833122-4	chr8	26832549	26833549	+	843.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8626.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.87106578939586	4.64783164262732	4.99841741139319	5.25048720652167	5.00271965525045	4.95644822877413	0.522225461113676	0.182633809310168	0.565440922476101
Merged-chr17-35202604-4	chr17	35202103	35203103	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-596.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	6.16600892967265	5.22598851010834	5.54932192725222	5.84440169385272	5.22590757038951	5.72205342482107	-0.172203608637839	0.684827238330502	0.916035928408467
Merged-chr4-19894779-4	chr4	19894288	19895288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	L1MC3|LINE|L1	27778.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	8.158967515215	8.45527646589696	7.90675261045809	8.06038915865251	8.36733809003505	7.78182228276561	-0.139230919414154	0.606178569192676	0.883895524399136
Merged-chr9-90208877-4	chr9	90208376	90209376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 11 of 12)	L1ME4b|LINE|L1	45898.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.99751064780188	4.04099001509312	4.42564035467687	4.12662134182468	4.16741076217351	4.19773416323325	0.0182032631438426	0.970283769765811	0.993405767524074
Merged-chr9-118650440-2	chr9	118649961	118650961	+	751.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	ORR1A2|LTR|ERVL-MaLR	43752.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.32506570142767	6.6991757878232	6.81474354409439	6.44695728028895	6.21867581444745	6.38686391921875	-0.442323868064334	0.129207244699049	0.480774367986696
Merged-chr18-65696863-1	chr18	65696363	65697363	+	555.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1405.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.3378659483307	6.0724267057824	5.80630477668141	5.38491760472931	5.58768337151356	5.10137853495642	-1.28456582709587	0.000397653034265725	0.00874777783605073
Merged-chr11-116985719-4	chr11	116985220	116986220	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	66857.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	2.982829579561	2.99270434969866	2.99814237092205	3.00947279510882	3.0728445830515	3.07039936282473	0.278298961050456	0.672767809718168	0.910949422492829
Merged-chr10-14115176-4	chr10	14114667	14115667	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 4 of 12)	Lx9|LINE|L1	148788.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.03358511014732	4.03511230557887	3.935138452468	3.95715508135925	3.80265034295218	3.95479598108806	-0.317010875667891	0.526018072427909	0.849272421520383
Merged-chr10-20349121-4	chr10	20348612	20349612	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1293.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	5.37844004144843	5.26721880583878	5.34395861700914	5.94042008691697	6.15148901447933	5.81105419002585	1.21021887111748	0.000176508290521986	0.00452349337026506
Merged-chr5-64780980-4	chr5	64780476	64781476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22547.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.33604626383119	6.33946510286013	5.93272638914585	6.26054572430332	6.35003800494776	6.28839662358547	0.119831845737187	0.682241369023317	0.915044974923355
Merged-chr5-121378943-2	chr5	121378443	121379443	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 4 of 11)	intron (NM_001359947, intron 4 of 11)	6466.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.785704838755	2.80558769077222	2.79569667616203	2.83188246163333	2.69255541537772	3.21074660327391	0.622633813750044	0.401555002512454	0.777615636032776
Merged-chr6-126702180-4	chr6	126701678	126702678	+	975.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38496.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	3.44303388003453	3.12791638852719	3.14559945244597	3.06198655776779	3.16257647530087	3.27595890457997	-0.350004048210538	0.591885697052361	0.87780418653262
Merged-chr5-130000155-3	chr5	129999689	130000689	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 2 of 2)	intron (NM_001357027, intron 2 of 2)	2860.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	6.075821320563	5.77167332064263	5.95647697486501	5.60393083237396	5.50464594296412	5.55654127578434	-0.702549102028121	0.0263578052092585	0.19279010687869
Merged-chr10-60373884-2	chr10	60373384	60374384	+	540.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25842.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.75951248042506	3.44562870821656	3.82212463263465	3.48301285609823	3.18410447993984	3.54031938974424	-1.01281130161789	0.0995692395800532	0.420748427554572
Merged-chr7-16273481-4	chr7	16272977	16273977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001136471)	TTS (NM_001136471)	215.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	5.25007547055301	5.1405674024519	5.33685866669199	5.55221290392587	5.07248313236083	5.27577319253139	0.143862070660185	0.696255413415578	0.919440123947475
Merged-chr10-21636872-4	chr10	21636372	21637372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43727.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	5.17705909549993	5.37784585065951	4.78982444741833	5.11768989767516	5.25434079636654	5.01747013108886	-0.0238440853853967	0.951881253400791	0.988976180066341
Merged-chr19-9913366-2	chr19	9912866	9913866	+	937.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-13833.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.21494877510638	7.38007270353399	6.94633260174661	7.52871997189299	7.51812949806341	7.31706813852963	0.38407788095407	0.126795336274554	0.475821329578006
Merged-chr8-111246487-2	chr8	111245987	111246987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	12715.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	4.3286932317523	4.49292059679476	4.70903344287504	4.54819467884077	4.64022055752444	4.84559996362461	0.406590828728916	0.346558325170414	0.734711689104559
Merged-chr12-84802842-4	chr12	84802345	84803345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	29575.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	4.87116800584589	4.63513551130814	4.31310636319361	4.64581051853591	4.56104711822746	4.43125380269053	-0.205520557853436	0.647703292691145	0.901510214793849
Merged-chr4-140702756-4	chr4	140702320	140703320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 2 of 12)	CpG-10575	1347.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	5.59556465808052	5.00066736784211	5.42937430982921	5.56579050568558	4.66103416529133	5.11274039304651	-0.392052238769725	0.385147826816334	0.766242799228034
Merged-chr8-36998732-1	chr8	36998232	36999232	+	638.0	f0_balb.idr	intron (NR_126063, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	5157.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	2.85966195104428	2.75123058037331	3.18002020120268	2.91706930499512	2.86816089829133	2.84929252956921	-0.274362154519591	0.703327711879348	0.922108924938678
Merged-chr15-25268586-4	chr15	25268080	25269080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145184.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.86575230040624	7.20524313354067	6.3508313464068	6.66233545966131	7.07185495669066	6.27959969066405	-0.216512147625741	0.543541640452083	0.857551302506722
Merged-chr13-65101479-4	chr13	65100983	65101983	+	931.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	11499.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	3.67903098932873	3.74425826880692	3.41846671144173	3.46688606821288	3.48241497465999	3.99809852408268	0.135213849982363	0.824826702449657	0.958596193929081
Merged-chr7-35055590-2	chr7	35055090	35056090	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	976.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.60251913877437	7.79317755688482	7.5394422622515	7.76512390820197	7.93631841561663	7.74617215974191	0.242595350331676	0.285760998397505	0.683240131512535
Merged-chr17-69220774-2	chr17	69220274	69221274	+	985.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56432.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	4.90506651950332	5.08501887201423	5.41014247878741	5.22429988617284	5.24248367201279	5.60423103250997	0.446985262797757	0.243965693169118	0.641102368207187
Merged-chr2-128067541-4	chr2	128067060	128068060	+	925.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-58478.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.69667594781671	3.79478137579977	3.58828845655674	3.72737377400296	3.95372444510536	3.87210268972272	0.503732435930365	0.348612792153107	0.736470744394742
Merged-chr11-121796223-4	chr11	121795711	121796711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34007.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	6.02677742566259	5.83129693198787	6.61121603801426	5.93919739551043	6.09685357972415	5.99214824604216	-0.298380627424272	0.386610226058024	0.767131316757601
Merged-chr11-102409269-1	chr11	102408769	102409769	+	610.0	f0_balb.idr	Intergenic	B1F|SINE|Alu	-1752.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	7.37155615883394	7.7734969973631	7.56099160606152	7.39427405893547	7.78542693121417	7.30918532217586	-0.0842693954088513	0.751129931240126	0.937718261890661
Merged-chr4-53157445-4	chr4	53156942	53157942	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	2453.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.20991474469647	7.72482596712439	7.42839898876271	7.52578766282495	7.71264237213393	7.34234406926018	0.0977134422502338	0.711845099488214	0.924889808252387
Merged-chr9-70650466-4	chr9	70649954	70650954	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	6720.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	6.79547927405949	6.92023517890846	6.38059711103203	6.81375601854356	6.89085295057931	6.74744122438861	0.139738001615368	0.616354631883311	0.888324462781191
Merged-chr2-52892094-4	chr2	52891699	52892699	+	798.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	34331.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.99513933325486	5.19182398660843	4.75856237805937	4.51623103897779	4.70773531841881	4.61745179012645	-0.870297552030856	0.0348302590214477	0.228929651750934
Merged-chr16-16565931-3	chr16	16565428	16566428	+	740.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	MTD|LTR|ERVL-MaLR	-5709.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.10171285202819	3.1428160757671	3.38610928161979	3.12266511445076	3.245660630658	3.35008497996001	0.128616145808546	0.840111331857477	0.962819298477451
Merged-chr16-36654114-2	chr16	36653614	36654614	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	11963.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.75455329162776	3.52694911434523	3.9469649455495	3.46946335405493	3.42572308260472	4.09995243640965	-0.174404032655919	0.779296571904257	0.945710994231145
Merged-chr8-116951113-4	chr8	116950616	116951616	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	7723.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	3.96444452905318	3.93419172705212	4.05657274261159	4.01434085442557	3.66211869267854	4.29714622442462	0.0681624598932304	0.899428392872961	0.97662115673637
Merged-chr2-27349128-3	chr2	27348626	27349626	+	837.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	78482.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.64593592234897	4.84277807370005	4.61830968583838	4.32061709811172	4.54922424599457	4.83556721681995	-0.318262960930425	0.466700531859401	0.817646675637448
Merged-chr1-127206346-5	chr1	127205852	127206852	+	992.9933470000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	1366.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.20005497511015	6.46790445518541	5.99527901217026	6.55082485910982	6.55240589361752	6.24167643119157	0.354352072981588	0.239264479962462	0.636064439885572
Merged-chr6-70844315-4	chr6	70843797	70844797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010121)	promoter-TSS (NM_010121)	-218.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	6.83461795210562	6.74277512306789	6.43587021850163	6.90376847204305	6.6553049734481	6.33335330602237	-0.0480807029914236	0.871142725786003	0.970222087171093
Merged-chr16-10987259-2	chr16	10986759	10987759	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	ID_B1|SINE|B4	5862.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.1619030612389	5.05571994437719	5.64765716218309	5.33748338733612	5.40899859710701	5.22831023068341	0.0640054338427481	0.865866341799258	0.968641478520565
Merged-chr8-82369867-1	chr8	82369367	82370367	+	591.0	f0_balb.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	32719.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.79896497949803	5.16255577333278	4.5407536635994	4.74109376659189	4.72883033395639	4.73789243929659	-0.311688635493248	0.466549640381815	0.817586753758551
Merged-chr4-40876931-4	chr4	40876506	40877506	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22469.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	3.15791914818652	3.1909062032731	3.14159440258834	2.79785566488532	2.85532799474674	2.78432243929058	-1.71468155364834	0.0168864682878949	0.144230060901166
Merged-chr13-52623268-2	chr13	52622768	52623768	+	764.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 6 of 14)	exon (NM_001198977, exon 6 of 14)	26386.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.20384581749459	3.37931379271539	3.60119825081006	3.08511155257501	3.32554682073444	3.62125939732668	-0.162542909125056	0.804391856839119	0.953645244705356
Merged-chr19-25000333-3	chr19	24999821	25000821	+	682.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	792.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	6.59903772732425	7.01389789813402	6.91153561441357	6.86878183362366	7.03178683741234	7.04998359740997	0.203780345484532	0.441736432234434	0.802865928078521
Merged-chr9-96630866-6	chr9	96630306	96631306	+	998.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 1 of 23)	CpG	697.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	5.90553688803464	4.99092362563135	4.82022054445956	5.53085800942141	4.39893722800392	5.04891687738669	-0.464674800018313	0.601945598874367	0.882182850946645
Merged-chr3-61441573-4	chr3	61441065	61442065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77058.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.82829459312519	4.80431047742859	5.00693290428046	4.41831395163399	4.54520428710428	4.86771176535643	-0.612953842024458	0.143520655767025	0.5057197732304
Merged-chr13-76384644-5	chr13	76384055	76385055	+	943.209534	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030174)	promoter-TSS (NM_030174)	-406.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.97818712432242	2.91825059025348	3.1343298235167	2.56936813393858	2.40090654296341	2.67460916839075	-2.91964989374601	0.00102775035554847	0.0184279268923694
Merged-chr19-11804630-4	chr19	11804130	11805130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	14773.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.9633517596325	5.97749905003292	5.98606672074826	6.08535464530388	6.24945069397886	6.02397013303214	0.269024568225178	0.352129376364753	0.739835187306448
Merged-chr8-84800454-4	chr8	84799956	84800956	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010906)	promoter-TSS (NM_010906)	-118.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	4.13786706890165	4.05685300194908	3.97577614232046	4.13944809702557	3.90124083045515	4.27659337148998	0.123065859994705	0.804201771275393	0.953600025427277
Merged-chr2-33962975-3	chr2	33962512	33963512	+	832.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75066.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.17956549067051	3.30244851281559	3.46572001452759	3.94555581820064	3.68426606532347	3.64837830238639	1.67775881063348	0.00520959520048994	0.0629043991822777
Merged-chr1-125458708-4	chr1	125458201	125459201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22974.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.64905627319097	6.64921228713526	6.14152190657516	6.55303675329865	6.81775553508781	6.5315576626536	0.212088699312999	0.475418948965643	0.821929811663097
Merged-chr4-14864227-4	chr4	14863709	14864709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-10.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	7.73426864513541	7.63493167965014	7.42303561892248	7.61861593446215	7.48929897486526	7.50083244597325	-0.106263529221764	0.645580462304416	0.900653253274445
Merged-chr11-75623526-2	chr11	75623026	75624026	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	RSINE1|SINE|B4	-7494.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	4.08758178066081	4.30838953063722	4.4798702198207	4.03989178596762	4.02158551061139	4.1673103279017	-0.619032236360606	0.199418975421305	0.58782960559926
Merged-chr3-9020422-4	chr3	9019912	9020912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER89-int|LTR|ERV1	-15689.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.51223023211057	6.35569446154555	6.03464558337776	5.98545546683908	6.17017795986088	5.87134684045245	-0.50714725614323	0.100557191688707	0.423011264207986
Merged-chr19-56797544-4	chr19	56797042	56798042	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170757, exon 11 of 15)	exon (NM_170757, exon 11 of 15)	16141.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	3.59499446270037	3.66593434436246	3.73530509598015	3.44683203565056	3.12808617564398	3.7062710843603	-0.815777906647736	0.192518867489021	0.57958355678666
Merged-chr15-66812703-4	chr15	66812208	66813208	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009192, exon 2 of 9)	5' UTR (NM_009192, exon 2 of 9)	19121.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.86327038048577	7.13471383766989	7.12349242754402	6.98352579959553	6.89154115317849	7.40138613193155	0.0874967660084772	0.749523344009491	0.93736827370126
Merged-chr6-116693751-4	chr6	116693246	116694246	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-19910.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	5.73604760539084	5.57003035959458	5.62860614368214	5.98202890262361	6.05165700862315	6.06082926080827	0.68436046324654	0.023137345014546	0.177864732960748
Merged-chr8-33673836-4	chr8	33673338	33674338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20600.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.60254690475655	5.86066779918286	6.00693686910148	7.24865299940867	7.47776456649548	6.8027863182723	2.23815496562964	4.13902822246613e-13	8.42054426246851e-11
Merged-chr2-152756696-4	chr2	152756190	152757190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2517.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	5.6693603438176	5.29670887287419	5.02847579605926	5.38643598029953	5.56463987414103	5.01700000933603	-0.0289208511002931	0.942907315257463	0.987217876821358
Merged-chr12-84195344-4	chr12	84194844	84195844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1329.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.61831229554297	5.29727923579448	4.99023689402565	5.40586791225457	5.52386268413899	5.13391276597875	0.0674259557809122	0.862243413852384	0.967996224966109
Merged-chr9-116156771-3	chr9	116156266	116157266	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	18597.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.75507248879838	6.81541008432529	6.26993457259566	4.87065655807391	4.89373391746045	5.21217498204665	-3.07494463409067	2.64673020136574e-18	1.35109893616712e-15
Merged-chr6-146501598-4	chr6	146501045	146502045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	678.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	6.03030627419366	6.49686047380238	6.51768659346263	5.96377346381332	6.18422189718673	5.65647806364274	-0.66930971821939	0.0462668813014602	0.272176502614853
Merged-chr17-5711547-4	chr17	5711060	5712060	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-87097.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.11883088172237	3.08436780101321	3.0140737159906	2.8762544897284	2.62504435508445	3.08667334030444	-0.98832750249368	0.183472308660642	0.566680172941153
Merged-chr7-19473163-3	chr7	19472668	19473668	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-14674.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.63232666123241	5.44706242294662	5.74122735924309	6.58142405351699	6.50363107329902	6.20768769229207	1.45933917036459	1.65269047088913e-06	8.38938085297031e-05
Merged-chr4-128984768-4	chr4	128984269	128985269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8455.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	7.32592628501344	7.37656339136417	7.03651621499217	7.63604805550421	7.75234400120898	6.85027898550154	0.328265175162208	0.292959222680339	0.690053425164737
Merged-chr18-79759056-4	chr18	79758556	79759556	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287839.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.3272963985241	4.18249822823757	4.23975922446843	4.28098308137711	4.13818065360615	4.35161794744053	0.00271954887184524	0.995276383246415	0.998961028701257
Merged-chr15-38279124-2	chr15	38278624	38279624	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20776.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.25194226323449	3.99777377379166	4.05699774078537	4.46281412109159	4.28391092862482	4.12735840410738	0.530813002216615	0.269408987825841	0.66649768267267
Merged-chr18-23750288-3	chr18	23749792	23750792	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126066)	TTS (NR_126066)	2013.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	4.94347731804951	4.96743212541792	4.5185291930149	4.41516881442901	4.77533426594971	4.44926686790896	-0.619994243614275	0.166348396218777	0.541593980223501
Merged-chr12-72408117-2	chr12	72407552	72408552	+	956.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	1002.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	2.6633632297749	2.67169349454454	2.73496502124794	3.33358406238919	3.04530709221678	3.2407350359505	2.74368339300633	0.000430837655994696	0.00934301268699679
Merged-chr5-66110612-2	chr5	66110112	66111112	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-12433.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.34384935976639	4.51929087560543	4.37576810171083	4.6247554467497	4.38961177864558	4.48726638260718	0.209038227030011	0.632030936363787	0.895435008062156
Merged-chr1-85598793-4	chr1	85598282	85599282	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030194)	promoter-TSS (NM_030194)	28.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	5.08751279192496	4.62606496105357	4.85939957451376	4.84816135097063	4.72955767704291	4.88790294815256	-0.121750515488445	0.765919763826377	0.942315053650124
Merged-chr15-59705820-4	chr15	59705342	59706342	+	929.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57188.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.30648942749897	4.03631253380265	3.85596517558358	4.011894239628	3.88264259643519	3.81858683197115	-0.532762883176469	0.30686170025852	0.703091920100449
Merged-chr4-88694275-2	chr4	88693775	88694775	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3007.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	3.70762492488345	3.48620505034396	3.80157581418426	3.73886783867948	3.36287971967181	3.72233334754349	-0.185569038247534	0.751086734268262	0.937718261890661
Merged-chr7-19224594-1	chr7	19224094	19225094	+	588.0	f1_c57bl6.idr	TTS (NM_175668)	TTS (NM_175668)	-3795.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	3.93411604331057	3.74886019923405	3.87299131600801	3.35560740718982	3.35581228329386	3.74702305794543	-1.2817847324806	0.0285448409240975	0.202382338412773
Merged-chr6-97830911-2	chr6	97830411	97831411	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	23853.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.63426818254873	4.70004897077042	4.8074003987957	4.52124319768612	4.75214135881922	5.10546306321776	0.215821151771207	0.611984751413684	0.886473391147181
Merged-chr6-136828853-2	chr6	136828353	136829353	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	10.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	6.99699990222289	7.26605281061029	6.88340373638793	7.19859572591478	7.27988026893904	7.25715912518218	0.267749916913695	0.284054814866663	0.681751219689789
Merged-chr14-54715125-3	chr14	54714574	54715574	+	885.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2900.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.62368163604539	4.41811627645905	4.25011079793237	4.01600272325742	4.05212778893661	3.8555688796768	-1.2810112732093	0.00949182213001025	0.096919319645833
Merged-chr7-31042196-4	chr7	31041677	31042677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	154.0	NM_008761	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	6.3918979419448	6.54988890820809	6.45150194544019	6.34788228566169	6.26643825539209	6.26056667248419	-0.286834794342386	0.286157248128123	0.683463892237707
Merged-chr9-20889810-2	chr9	20889310	20890310	+	792.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 5 of 11)	exon (NM_145610, exon 5 of 11)	1635.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	4.45665332794786	4.34981974020812	4.54884438923408	4.90772946137766	4.80228408064176	4.88586234165437	0.991898972193684	0.0151712566272258	0.133739794622121
Merged-chr2-30177958-2	chr2	30177458	30178458	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172660, exon 2 of 12)	exon (NM_172660, exon 2 of 12)	501.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	5.18120800334795	4.97294577506767	5.39923560589286	5.30488517697579	5.01885255068965	4.90590619085183	-0.199097636199485	0.608338251047172	0.884987135568878
Merged-chr7-143005339-2	chr7	143004839	143005839	+	931.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128082)	promoter-TSS (NM_001128082)	293.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	2.89064837439452	2.97775947176452	3.24738453908466	3.93102555952054	3.22617139565072	3.75266474955948	2.58164629101976	0.00038647083924548	0.00856162555695897
Merged-chr11-121228771-2	chr11	121228245	121229245	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001252549, intron 1 of 6)	intron (NM_001252549, intron 1 of 6)	195.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	7.39871569172011	7.67443409283581	7.50419720471973	7.44461964257417	7.80218577421823	7.21176919065878	-0.0160174616263022	0.951981809004614	0.989013170479262
Merged-chr2-150839084-2	chr2	150838584	150839584	+	829.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 7 of 12)	intron (NR_151505, intron 7 of 12)	3486.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.67088484071607	6.95203585713302	7.01447391970852	6.64236966738032	6.70071920705476	6.63478692016721	-0.345637350168749	0.186471568108295	0.571038204837541
Merged-chr1-36961032-4	chr1	36960515	36961515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21488.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.88658181604284	6.66080123820347	6.45086296333659	6.70365909366897	6.97143416410741	6.45249540488868	0.0827703738788792	0.778520995603134	0.945520893795831
Merged-chr19-29365520-2	chr19	29365020	29366020	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	4.31985575287191	4.08733014020038	4.27689327913749	4.25423132103086	4.56651143891053	4.34489663840268	0.459907136762876	0.321146879381243	0.714758187580158
Merged-chr3-100162980-1	chr3	100162480	100163480	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	517.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	6.44677031684768	6.7152485517615	6.50351909483968	6.70334339912812	6.73782430876576	6.69863850555966	0.236916611040665	0.365736955801738	0.750755886042233
Merged-chr2-142700912-3	chr2	142700428	142701428	+	773.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	200536.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	2.96409150098561	3.32513190532428	3.38771538299686	3.07961256388696	3.3703812063828	3.23837721934924	0.00675459878455849	0.991998969072351	0.998363319124397
Merged-chr6-84750901-2	chr6	84750401	84751401	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-156993.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.84652580518933	5.0311012462565	5.05143500815898	5.00905186702241	5.12551934731579	5.21346792602135	0.296592811824202	0.423066240792069	0.791814651217475
Merged-chr16-97851592-11	chr16	97851098	97852098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144789)	promoter-TSS (NM_144789)	252.0	NM_001359078	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	6.80361555797837	6.1861924459227	6.52391736111916	7.02932080126946	5.95875598420351	6.56615176612605	0.101077529544593	0.788953116624887	0.949092571737679
Merged-chr1-66700333-4	chr1	66699819	66700819	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	-512.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	4.64117032724731	4.70333623342084	4.75478410305646	4.94637448371371	4.58453508048703	4.74330395655043	0.150705669192935	0.712927720951585	0.92531822516521
Merged-chr13-45001609-4	chr13	45001058	45002058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	538.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	8.55384444293226	8.78772145564089	8.15735787811347	8.53175112078108	8.5454672866413	7.85470035999782	-0.242385813462099	0.402533611593227	0.778081174697644
Merged-chr17-33956730-2	chr17	33956247	33957247	+	807.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357329, intron 1 of 19)	intron (NM_001357329, intron 1 of 19)	657.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	5.67870576919101	5.60342117161004	5.56249894846817	5.69196928754527	5.87450100272626	5.81232464981297	0.326583432142528	0.294460833481769	0.691245357943879
Merged-chr16-75961255-4	chr16	75960748	75961748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39536.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	5.9922212559509	6.01877532086048	6.264624416201	6.16129832942506	6.48720262223076	6.26532933527385	0.387904659151533	0.187456657871919	0.572462788131045
Merged-chr4-16164815-2	chr4	16164315	16165315	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	705.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	5.21884404889291	5.28962409011326	5.15897845828631	5.35935293793178	5.38433582930364	5.0061347692157	0.0933418174663077	0.796448330359678	0.951430675491237
Merged-chr16-32876889-3	chr16	32876406	32877406	+	880.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-878.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	5.8472169709654	5.71239895803966	5.38880439533593	5.48149342445654	5.28605689980841	5.18116456935179	-0.663485055703741	0.0594420719998776	0.315658684470344
Merged-chr11-79674444-4	chr11	79673967	79674967	+	870.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045898, exon 2 of 3)	non-coding (NR_045898, exon 2 of 3)	619.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.27244909583808	3.4122600136138	3.31366345172053	3.57932710003026	3.26473577487971	3.65457228989897	0.633077499808035	0.30209681066513	0.698867644067619
Merged-chr2-165885234-1	chr2	165884734	165885734	+	647.0	f0_c57.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-396.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.78644584503058	7.86162668112054	8.00609266886292	8.08454990388317	8.18104642148849	8.09752529747956	0.340474383216269	0.109995897509219	0.443329553884578
Merged-chr7-19277472-2	chr7	19276972	19277972	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177691, intron 4 of 4)	B2_Mm2|SINE|B2	2577.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	4.01219011193312	3.66931708864415	3.93527370992766	4.14422116981816	3.95481617122671	4.00477250353059	0.476557951637635	0.356675545127184	0.743448231367782
Merged-chr11-21022004-2	chr11	21021504	21022504	+	663.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69320.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.62560683427373	3.48712623837356	3.51105417297317	3.61953077466497	3.53824136541024	3.35112012389335	-0.112344016014432	0.846542365450179	0.964033094055515
Merged-chr4-102572264-4	chr4	102571765	102572765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2205.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.6634589171659	7.30846358072491	7.26800367179858	7.61193039588353	7.65460613821968	7.55258639402337	0.2584368777315	0.28835518057153	0.68578208663206
Merged-chr11-114933753-4	chr11	114933215	114934215	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	671.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.8673596820643	7.02376772392675	7.05621409996334	6.79538394405033	7.09082202386248	6.65700671796909	-0.167481297270983	0.530015262077578	0.851070276054813
Merged-chr8-115697775-3	chr8	115697300	115698300	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9094.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.51857508874359	4.44536886339342	4.77553632618342	4.29339792940296	4.41614491327656	4.411863437039	-0.509478355718328	0.247167757627383	0.644145276280485
Merged-chr11-59216919-4	chr11	59216425	59217425	+	716.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	8564.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	4.80506093449799	4.96102080745023	5.19970940848246	5.17984779327982	5.22348654891809	5.10006699909801	0.391417429967121	0.295622595748496	0.692574399499983
Merged-chr4-133675918-4	chr4	133675401	133676401	+	863.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2735.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	5.86172331170268	5.75907535505405	6.09619925697405	5.60000688856016	6.00537659461334	6.39788896975597	0.223117495240969	0.527011558873586	0.849721506593163
Merged-chr12-21370090-2	chr12	21369590	21370590	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3542.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	7.32969755862293	7.79186032004787	7.41833204839921	7.78103672187882	8.35343257861576	7.62076036663796	0.62364351733512	0.0340867418155069	0.225855200906569
Merged-chr6-8770597-3	chr6	8770124	8771124	+	973.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010492, intron 1 of 13)	intron (NM_010492, intron 1 of 13)	7860.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	2.27331341479918	2.43285523130102	2.54884423885336	2.32068275384521	2.2081358422133	2.30537607744006	-0.953372118006149	0.264633333790285	1
Merged-chr7-66139096-2	chr7	66138596	66139596	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	29581.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	3.12777408505239	3.37484685457827	3.51598421281366	3.1500281424751	3.07837654698339	3.32417217072068	-0.665591587233988	0.303444426603872	0.700000106705157
Merged-chr5-145119100-2	chr5	145118600	145119600	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	B1_Mm|SINE|Alu	4844.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	4.62964682939052	4.55382415786288	4.5592624252532	4.6377355570133	4.63314598395997	4.62598758410615	0.120693207362113	0.767577129657748	0.942631324765497
Merged-chr8-84978629-6	chr8	84978089	84979089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008416, exon 1 of 1)	5' UTR (NM_008416, exon 1 of 1)	159.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.1961877119734	8.0367320366996	7.90078356775119	7.94975080271233	7.97833607106454	7.50282966110592	-0.308281898892378	0.213123670673161	0.605842142465242
Merged-chr1-182461510-3	chr1	182461004	182462004	+	863.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173378, intron 17 of 17)	intron (NM_173378, intron 17 of 17)	52337.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	3.41551279294763	3.43018641152595	3.52759708711876	3.34666193860822	3.28452655562272	3.43787510499644	-0.39647137568348	0.501322945236809	0.835571726918265
Merged-chr1-34839895-1	chr1	34839395	34840395	+	563.0	f0_balb.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3155.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	7.055748281687	7.03518059305377	6.80404882040614	7.05980719609657	7.05060059732337	6.61045896072843	-0.0635050731272705	0.814748779164626	0.956370078970016
Merged-chr7-144939805-4	chr7	144939309	144940309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007631, exon 1 of 5)	5' UTR (NM_007631, exon 1 of 5)	116.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.67775246054844	6.4668661008118	6.37886363929943	6.87268749576354	7.02203097454159	6.51660459344442	0.492340913788029	0.0843717878215351	0.38442710114195
Merged-chr13-65241041-4	chr13	65240576	65241576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35360.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	7.41547268703367	7.7321980280514	7.57488578223083	8.02603786567808	8.21933010440098	7.34903673658731	0.494692987387657	0.0913683451021606	0.40231662482196
Merged-chr1-65178337-4	chr1	65177833	65178833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	809.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	8.12606279361478	8.59494588259148	8.00580873639283	8.16190030561306	8.6873554216135	7.86525522566008	0.0280489644523073	0.925847552377636	0.983305773102619
Merged-chr13-23710630-4	chr13	23710142	23711142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010424, exon 1 of 6)	exon (NM_010424, exon 1 of 6)	212.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	8.66248349392481	8.55114207161485	8.24037268387019	8.56436268857451	9.12959707930773	8.38534786569487	0.333374122394272	0.226520183565555	0.621481516556407
Merged-chr8-66436096-2	chr8	66435596	66436596	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49795.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.63702674033838	4.79096196775485	5.20945066547712	4.96383161396176	4.52477555797151	4.88560280208072	-0.206688998369207	0.637496987950494	0.89735407749672
Merged-chr19-5924124-4	chr19	5923671	5924671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	645.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	6.88401943171954	6.79969001610508	7.1268632578442	6.65146455892617	7.012791285771	6.99687486352104	-0.059128142063932	0.825911052946222	0.958999674095825
Merged-chr10-75505725-2	chr10	75505225	75506225	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11656.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	5.51795829558125	6.09005771238114	5.88600795268649	5.60620440952831	6.09935385066998	5.79894632296244	0.00880824109416548	0.980181787457773	0.995483481682754
Merged-chr15-8413274-2	chr15	8412774	8413774	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	31189.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	3.43712626958037	3.43264695397199	3.85111602411854	3.24759256716595	3.51668875335387	3.63462097513874	-0.382684379895493	0.535702872278618	0.853668337370661
Merged-chr14-63409390-4	chr14	63408869	63409869	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7818.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	5.55016178481695	5.84853361989368	5.68484110554454	5.53643830880766	5.50531686036867	4.99871427743696	-0.599357712457443	0.101707499351415	0.425526830552724
Merged-chr10-34267543-4	chr10	34267052	34268052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14638.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	5.12161714779679	5.32013836780273	4.99467843700643	5.19522415936537	5.00103250530849	4.78389199515295	-0.312820719738028	0.418820472307487	0.788755230826602
Merged-chr11-116847404-1	chr11	116846904	116847904	+	647.0	f1_balb.idr	intron (NM_028865, intron 1 of 4)	ID_B1|SINE|B4	3889.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	2.78498602876545	2.85221573845383	3.15958802782354	3.08111989591445	2.79914361477733	3.33657811205532	0.667910488315269	0.363066179082524	0.748626117770869
Merged-chr1-152555217-4	chr1	152554712	152555712	+	897.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	70005.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.79191000345688	6.913703261117	6.99128846656334	6.75467541707001	6.86226116686644	7.14861483590874	0.0418876111436427	0.872355318709728	0.970261003150518
Merged-chr11-51927390-4	chr11	51926876	51927876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40255.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.32702534797819	6.64364744070959	6.21256600845785	6.62781224867106	6.82942462306821	6.41831003544962	0.366008835012277	0.215271091204855	0.608640059700088
Merged-chr5-135170649-2	chr5	135170149	135171149	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	intron (NM_009745, intron 1 of 5)	2277.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	3.83387432799729	3.87145415087971	4.24808132290047	4.00244844216405	4.21034713705344	4.27246458261313	0.517704926408463	0.307854308554035	0.703908694626807
Merged-chr17-13683996-4	chr17	13683509	13684509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76532.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	3.31043950577551	3.04741953538547	2.95974553048228	3.52572429770568	3.54932629268839	3.40943631838497	1.52414052337595	0.0237728917173234	0.181052838816208
Merged-chr9-43106062-4	chr9	43105565	43106565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027144)	promoter-TSS (NM_027144)	-347.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	7.83212999062484	7.68649535315819	7.60127342498483	7.75345854236202	7.40545281938358	7.47840450322707	-0.230645647125946	0.333467882757975	0.724434307441351
Merged-chr14-61309778-4	chr14	61309284	61310284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177337)	promoter-TSS (NM_177337)	31.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	6.41713971395476	6.50466175307003	6.72065387038741	6.16706257283186	6.14853531903028	6.34550185594222	-0.54147174768087	0.0524260203274158	0.292808719251149
Merged-chr2-36215563-2	chr2	36215063	36216063	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-14863.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.54591393632163	3.61567389318029	4.10797078335325	3.9063400071674	4.06147868373541	4.33969622806578	1.03215842876944	0.068110973596399	0.341490593577318
Merged-chr1-175660097-1	chr1	175659597	175660597	+	654.0	f0_balb.idr	3' UTR (NM_133809, exon 15 of 15)	3' UTR (NM_133809, exon 15 of 15)	27904.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	2.35434644792607	2.39258139122979	2.86467902874441	2.35393265753749	2.28350038387798	2.46522440995069	-1.12962506545348	0.192491679045365	1
Merged-chr11-106460767-2	chr11	106460267	106461267	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	27029.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	6.15369461360251	5.86214203681635	5.73306629281625	6.1990461624943	6.54018658296665	6.11643341391903	0.641141425495417	0.045490836300332	0.26930436162134
Merged-chr17-55726400-4	chr17	55725889	55726889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13753.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	6.37410835842279	6.13624025012054	6.12794592863642	5.93875176565337	6.14286416598932	5.98394469040355	-0.324148446065306	0.270048268895522	0.667067726235968
Merged-chr3-69690452-2	chr3	69689952	69690952	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31603.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.0121091391945	2.7675190531489	3.03035864079287	2.99618698806815	3.34160050446893	3.2187889438505	1.15988055665192	0.0974590249232861	0.416242873391297
Merged-chr14-24490656-4	chr14	24490151	24491151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207635)	promoter-TSS (NM_207635)	-27.0	NM_207635	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	4.845557879379	5.35093406569432	5.40395193356503	5.07540152015676	4.83662724794753	4.99489132827667	-0.525399217743136	0.18996910453754	0.576138987110352
Merged-chr7-120729925-2	chr7	120729425	120730425	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 2 of 2)	intron (NM_001164580, intron 2 of 2)	-9632.0	NM_177697	233813.0	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	3.25650766720349	3.78316764233007	3.50966070107317	3.77811752426889	3.35827709093272	3.8870865297691	0.517127968436591	0.418335662520693	0.788588731807313
Merged-chr7-114894276-3	chr7	114893760	114894760	+	785.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54390.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.64018102664424	3.60386447573012	3.9972739653136	3.52298143934868	3.78665079127713	4.10731048903152	0.222586548719205	0.701967420759404	0.921645840576703
Merged-chr10-67189160-3	chr10	67188672	67189672	+	694.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	3422.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.68247488170512	4.88532580985833	4.26076953423521	4.41772682697973	4.91941229986047	4.28104501474368	-0.141327019109338	0.780667277510316	0.946078518476608
Merged-chr13-97340665-4	chr13	97340158	97341158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94312.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	3.58622449171477	3.47153854533549	3.60837703304297	3.74670737790162	3.97706697426381	3.51003604464014	0.73205075821832	0.202057599641718	0.591773948258361
Merged-chr14-70572628-1	chr14	70572128	70573128	+	902.0	f0_balb.idr	3' UTR (NM_021877, exon 20 of 20)	3' UTR (NM_021877, exon 20 of 20)	-5196.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	2.44376041332255	2.51608770415858	2.68293316643947	2.19902260053228	2.272209997991	2.19478961884084	-2.35161292993914	0.0132645258316829	1
Merged-chr17-12916275-4	chr17	12915776	12916776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013686)	promoter-TSS (NM_013686)	-53.0	NM_001290712	21454.0	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	7.23607332539509	7.52794524435196	7.21342568749595	7.42679764651045	7.47585078064043	7.23425779734142	0.0724631111246717	0.768279238090357	0.942864224975033
Merged-chr2-30177237-2	chr2	30176737	30177737	+	728.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172660, intron 4 of 11)	intron (NM_172660, intron 4 of 11)	1222.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	3.16618619999765	2.9660811088993	3.21380833438844	3.22732656913866	3.11945871513625	3.17104314839968	0.24402731641873	0.706255906516116	0.922946364495901
Merged-chr16-30602998-3	chr16	30602517	30603517	+	817.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177632)	TTS (NM_177632)	3294.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.99610170907399	5.02719804769732	5.33841989373746	5.06570841964076	5.02316082644971	4.94637902716873	-0.217581498260831	0.562416076992628	0.865738912855472
Merged-chr16-32202306-3	chr16	32201804	32202804	+	984.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	22504.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	6.29656223623807	6.01628379917725	5.86592560291817	5.91851922279916	6.02897944793016	5.85087920463366	-0.242689616132544	0.433031959625286	0.79758551656855
Merged-chr14-79390721-4	chr14	79390220	79391220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025832)	promoter-TSS (NM_025832)	-52.0	NM_025832	66897.0	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	6.2372579865495	6.51580181236447	6.73151200412526	6.32651163796331	6.49465612838111	6.58820719840611	-0.0489859959437823	0.865852120903076	0.968641478520565
Merged-chr9-101030279-2	chr9	101029785	101030785	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 2 of 13)	intron (NM_001311149, intron 2 of 13)	4599.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	2.87345542431348	2.70051369668808	2.57520252210484	2.77366353078724	2.91444706577432	3.19501048322616	1.20215950959593	0.123973405185991	0.471278757298044
Merged-chr3-108858355-2	chr3	108857855	108858855	+	652.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 10 of 11)	intron (NM_001165965, intron 10 of 11)	-17853.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	2.93966945165593	2.66035742466344	2.82422294808581	3.12747842791461	3.15761392653202	3.08425505127311	1.50397231651152	0.0367637996060045	0.236110083175087
Merged-chr10-79683515-2	chr10	79683015	79684015	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	1320.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	3.77256107663998	3.67710919657683	4.06497396670506	3.92746131294899	3.41572447103998	3.99864791799726	-0.134141801215928	0.820008980004107	0.957417382877975
Merged-chr5-140703658-2	chr5	140703158	140704158	+	806.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1280.0	NM_001347517	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	4.28870561167229	3.8447041515925	4.0638879210678	3.92709096631048	4.0940020620625	4.17860913894702	-0.033665846286368	0.947392505098217	0.988008807662239
Merged-chr17-34180711-4	chr17	34180196	34181196	+	864.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6634.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	3.94025751185919	3.93025128666398	4.11072460929782	4.51994395491432	4.95670603978132	4.70333107490588	2.01440650578249	1.83849948424121e-05	0.000679901622598856
Merged-chr1-85840544-4	chr1	85840060	85841060	+	756.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	46543.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	5.94143625170861	5.60288583389312	5.71135322098247	5.52353286510868	5.7714333604914	6.13660012548919	0.115878376985708	0.737972056330132	0.933858424870961
Merged-chr7-80770474-1	chr7	80769974	80770974	+	978.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B1_Mur2|SINE|Alu	32857.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.48596883918323	5.42202032447845	5.8607392690623	5.67757239326463	5.31640303723722	6.04885643103691	0.200576672236648	0.596337761532594	0.879911021114935
Merged-chr4-155223270-4	chr4	155222751	155223751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011385)	promoter-TSS (NM_011385)	-716.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.17539312926552	7.16690640463417	6.97197424244301	7.25134350959898	7.08097912321285	6.80486106947998	-0.0711487609799993	0.783310810276875	0.947047832110637
Merged-chr14-54417782-4	chr14	54417280	54418280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253679)	promoter-TSS (NM_001253679)	-78.0	NM_011405	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.81926515081334	4.79557184051664	4.79258888488291	4.76099845689574	4.50684010606653	4.70366275617002	-0.346033705369534	0.390292382219498	0.769585097056154
Merged-chr11-19929310-4	chr11	19928812	19929812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	4870.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.63988578394534	4.46431931139972	4.28418195846053	4.01066500953971	4.00281020272719	4.11466188516127	-1.20636137585852	0.0106390671331928	0.104975156885889
Merged-chr18-66073096-4	chr18	66072509	66073509	+	816.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178793, intron 6 of 10)	intron (NM_178793, intron 6 of 10)	-70374.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	3.61180705147368	3.46551014063648	3.90224242227585	3.86843606638459	4.07805522036341	3.71770022546501	0.782540685807342	0.165595171680433	0.540743015340971
Merged-chr12-12300348-4	chr12	12299840	12300840	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38201.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.82269291904904	6.06939532353748	6.30168475052623	6.16014671670822	6.47672758882612	6.34253186906006	0.449956633567258	0.141260538736832	0.502071970749406
Merged-chr1-191098381-4	chr1	191097877	191098877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-37.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.66383392905168	7.65285691253799	7.60775964550901	7.44758710573606	7.42218472765057	7.41480191126008	-0.31388460831231	0.150558811111132	0.51745962639137
Merged-chr11-74638110-4	chr11	74637617	74638617	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013784, exon 4 of 4)	exon (NM_001013784, exon 4 of 4)	-11378.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	6.4101692453242	6.36874021501206	6.59466735593066	6.33070711779955	6.09169847586088	6.39619032842353	-0.304684505703163	0.280261452935338	0.678084236452666
Merged-chr7-97330319-2	chr7	97329819	97330819	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2004.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	2.30405119473733	2.26894653818635	2.49144903152097	2.31495494485404	2.05282959103109	2.62588636851915	-0.0255854396236323	0.978033947406392	1
Merged-chr19-42000902-1	chr19	42000402	42001402	+	774.0	f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19139.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	7.26882116237628	7.31977106273425	7.27370969772061	7.21059573436821	7.32862017335813	7.35332499341112	0.0146020332082191	0.949048223408556	0.988169196639905
Merged-chr11-89015321-2	chr11	89014740	89015740	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 6 of 8)	intron (NM_009546, intron 6 of 8)	15837.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.82827426865306	4.00656873309089	4.06612859207346	3.76005644981317	3.65217412022617	4.30168911439261	-0.12617305415013	0.821614977555361	0.958023303204974
Merged-chr4-138125895-1	chr4	138125395	138126395	+	941.0	f1_c57bl6.idr	exon (NM_172703, exon 12 of 35)	exon (NM_172703, exon 12 of 35)	12623.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	3.7180075685578	3.42179270836912	3.99439686472931	3.44515235982516	3.32375973541152	3.3627565479814	-1.25624332127336	0.0413809128799026	0.254206201469984
Merged-chr15-86206629-4	chr15	86206122	86207122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7837.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.99074022160441	5.683781063408	5.75755659719168	5.68729638153475	5.86586257946149	5.62932581200001	-0.144203257921156	0.652649294578362	0.902998982169989
Merged-chr9-123538318-2	chr9	123537818	123538818	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	8565.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	4.32923968812622	4.27338931609507	4.56831746396686	4.97111722256053	5.09683620879054	4.90746999936027	1.45962792747142	0.000404557911152792	0.00886087251150343
Merged-chr4-114973810-2	chr4	114973310	114974310	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	RSINE1|SINE|B4	13418.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	5.17059354515767	5.21056381105569	5.34101204676801	5.47491665536403	5.4296271229672	5.7293459038117	0.596632633051142	0.0822173418974801	0.379123019025808
Merged-chr16-15637483-4	chr16	15636991	15637991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	-91.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	6.37521953181903	6.57634229850297	6.55608975253139	6.6324479449305	6.69900904184759	6.45397754577145	0.165287948018867	0.536792495424529	0.854215768737235
Merged-chr6-87534378-3	chr6	87533890	87534890	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1131.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.87092165805712	7.853632558503	7.8816006436981	7.61217675154809	8.08637951831972	7.74652735402715	-0.0422513687696808	0.860351009128563	0.967478885297186
Merged-chr13-37718531-4	chr13	37718015	37719015	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-107523.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.90455195402346	3.55941738324689	3.77246141027763	3.61341796368435	3.6146594129894	3.52078763953681	-0.56735018715069	0.313597917511091	0.708121563861612
Merged-chr10-121496208-2	chr10	121495708	121496708	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19958.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.31802779607032	6.36734649412135	6.4129401542198	5.78915273970219	5.69947627099113	5.91735468144262	-0.978819759498234	0.000675812283915718	0.0133285111448351
Merged-chr7-139281307-3	chr7	139280852	139281852	+	791.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32870.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.37949251398032	3.45498144025868	3.63010091413596	3.35702392211298	3.54601916159425	3.49198419114205	-0.0619124403796977	0.915883092686979	0.981201223155309
Merged-chr2-167422678-2	chr2	167422178	167423178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304542, intron 1 of 15)	intron (NM_001304542, intron 1 of 15)	968.0	NM_001304542	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	6.40358615835144	6.51221657704065	6.30735332907098	6.49932173036181	6.52777380015766	6.08175258297952	-0.0279159203182086	0.92351305009291	0.982720998667572
Merged-chr14-64178914-3	chr14	64178454	64179454	+	636.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	ID_B1|SINE|B4	74631.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	3.39140391828644	3.20132313589875	3.31047340896339	3.15554600505307	3.20804259387625	3.32584094273413	-0.307857688117915	0.620251271956061	0.89003306426934
Merged-chr1-64149949-2	chr1	64149449	64150449	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-28560.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.42339701447469	4.29618919847642	4.4856196356711	4.75862853274004	4.92201235360213	4.46519883817027	0.833511716074725	0.0559337100057844	0.304457880879889
Merged-chr2-129342258-3	chr2	129341768	129342768	+	774.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27634.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	3.50427543421997	3.72003679695164	3.85846955730266	3.93473273292737	4.05504702087336	4.44270139096111	1.41154118107928	0.0103112550734135	0.102604509943625
Merged-chr6-113082295-2	chr6	113081795	113082795	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	4656.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	4.70366477178067	4.93317051599409	4.70272277885488	4.66975351502745	4.54252197588216	4.68934053087906	-0.375006589510308	0.357575616418786	0.744182283859192
Merged-chr10-80539216-4	chr10	80538702	80539702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026094)	promoter-TSS (NM_026094)	-78.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	2.72685648394908	2.84852016463994	2.74296139699984	3.05584258990393	2.67583460969053	3.1733903070502	0.996253818278548	0.185738109254699	0.570038971483659
Merged-chr8-105349092-7	chr8	105348541	105349541	+	912.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081332, exon 1 of 16)	5' UTR (NM_001081332, exon 1 of 16)	783.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	5.68111821985591	5.38277949796869	5.16589222032578	5.21459721643754	5.37300666933928	5.04798310612583	-0.410424084359974	0.273890334543072	0.671305269086912
Merged-chr5-65136386-4	chr5	65135884	65136884	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	5153.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	4.19228064809355	4.3313783977484	4.2218671375759	4.59083897284774	4.66882079795911	4.63852923769561	0.969877200174462	0.0255156531450521	0.189377082052761
Merged-chr2-128966728-1	chr2	128966228	128967228	+	551.0	f0_balb.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-674.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	7.15812376487298	7.41430698586614	6.88976886952731	7.07860041551179	7.13755397473752	6.80949166414122	-0.240332666644771	0.380240901775649	0.7624083092188
Merged-chr3-106573384-4	chr3	106572878	106573878	+	967.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 6 of 6)	intron (NM_001025582, intron 6 of 6)	-25576.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	5.21425624999103	5.47244370108873	5.13515396703007	5.19632394983211	5.52742663265001	5.36476566025064	0.167981199275846	0.642552320110704	0.899438418121699
Merged-chr18-76237496-4	chr18	76237007	76238007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-4194.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	5.11874819817997	5.4506861462943	5.46613070761704	5.20499636117795	5.02423520258047	5.23056056817575	-0.407855621690869	0.262564794328576	0.660543957868245
Merged-chr18-64991486-6	chr18	64990963	64991963	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-32064.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.11081123887652	2.94593772664993	3.06741748144444	3.17788313142987	2.94260745639198	2.95820858606773	-0.0524191155507355	0.938136438461388	0.986279451858875
Merged-chr15-86205766-2	chr15	86205266	86206266	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.51851061676973	5.24036278020268	5.38949621828055	5.49068163362089	5.46302548445107	5.45274366608954	0.15835750444606	0.638152439160862	0.897380718500389
Merged-chr18-65680268-4	chr18	65679737	65680737	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-18031.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.24718432697173	8.46983191930919	8.22817442372005	8.35626787189845	8.60462001931591	7.83638034034577	-0.0106270148453958	0.968397599934706	0.992776669007643
Merged-chr5-140762439-2	chr5	140761939	140762939	+	694.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 3 of 3)	intron (NM_010302, intron 3 of 3)	38312.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	3.45070244518185	3.46285586685092	3.2407153845653	3.08583917640084	2.81387813682901	3.00725748997927	-1.94839494144914	0.00547293139704072	0.0653078553972414
Merged-chr7-80782433-4	chr7	80781957	80782957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	20874.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.85013664012167	7.83604693348107	7.34136718784074	7.42765668684692	7.52879312946214	7.34064144281932	-0.389215604468844	0.12678026192458	0.475814093971008
Merged-chr9-61373049-3	chr9	61372521	61373521	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001083927, exon 1 of 20)	5' UTR (NM_001083927, exon 1 of 20)	655.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	5.84306251484317	5.9312605700634	5.9094324030175	6.11575129131193	6.00369516022235	5.79399009975885	0.158699744037086	0.597731036354226	0.880455475375358
Merged-chr9-107312976-4	chr9	107312471	107313471	+	969.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16312.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	5.21772117260807	5.22392444700829	5.1025562551274	6.44901747407404	6.4312571487641	5.8162892310864	1.97172939915432	1.73359837296289e-08	1.48557418555609e-06
Merged-chr8-110231983-4	chr8	110231459	110232459	+	841.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13999.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	3.26614199353791	3.46438879525879	3.45872981103948	4.04385422873249	3.86286675975564	3.53305351110486	1.53606929865979	0.0101383110393355	0.10136849134355
Merged-chr4-139253640-1	chr4	139253140	139254140	+	665.0	f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	57068.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	4.20566377308034	3.95345504949933	4.17168984575322	3.94185674937614	4.02075074193796	4.23895281203288	-0.132151023553063	0.788686208483873	0.94895503373255
Merged-chr11-70452250-4	chr11	70451756	70452756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025397, exon 2 of 3)	exon (NM_025397, exon 2 of 3)	325.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	8.2124259234037	8.22757699422977	8.22948534920352	8.04241925177509	8.25349906157064	7.93108288129142	-0.187739525863547	0.387534528329804	0.76768118438771
Merged-chr2-158498428-4	chr2	158497929	158498929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4183.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	5.58960746349796	5.58068799640242	5.62514128481963	4.71477472240213	5.13247712599643	5.47365997993511	-0.911046941650722	0.0192961497973693	0.157658487071828
Merged-chr8-41218072-3	chr8	41217595	41218595	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-2939.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	2.81712047946853	2.51002216149882	2.65773675068509	3.18800870348794	3.40999102146046	3.067280342279	3.03161254188886	0.00049985206355172	0.0104923538102955
Merged-chr11-103117973-2	chr11	103117473	103118473	+	782.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	1648.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	5.16688220707219	5.0983870766305	5.19689836180549	4.99981158623888	4.84683220259498	5.13150334295695	-0.350528504272925	0.341615573452444	0.730935106878357
Merged-chr4-132476044-2	chr4	132475544	132476544	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-12123.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	3.94064721910612	3.7756092885386	4.15193573184555	3.52044602518483	3.50821947923552	3.35661676782401	-1.68195186353702	0.00435449244873174	0.0554952684444894
Merged-chr3-62459415-2	chr3	62458915	62459915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	47573.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	2.359682370564	2.65498203919718	2.81699002830744	2.67529259053762	2.67998862403749	2.77105669888374	0.470936558752754	0.561517673526617	0.865407801976397
Merged-chr18-61571015-6	chr18	61570530	61571530	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357500, intron 4 of 9)	intron (NM_001357500, intron 4 of 9)	15757.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	5.98361060957927	6.05035123176194	6.37894801399078	5.94135673969876	6.04412289180718	6.34901533190113	-0.041609762900104	0.893868913867965	0.975280227461205
Merged-chr2-27515152-4	chr2	27514607	27515607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-40.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	6.94200767887761	7.01007274374029	7.22549154712121	6.94291686625335	6.98266147313335	6.88622995072599	-0.178259569440109	0.470908653429429	0.819784379107259
Merged-chr5-148739338-4	chr5	148738829	148739829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2511.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.90073499978695	3.89659694843984	4.39079476960778	4.705552540126	4.53052221127333	5.05878570479149	1.83188557331861	0.000251584029082844	0.00604150184471149
Merged-chr6-115491445-4	chr6	115490946	115491946	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-53258.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	4.24109307962783	4.72358241512837	4.37293746000149	4.63931627732702	4.76064871400757	4.39559109018114	0.354975412205135	0.443755791552593	0.803884349333946
Merged-chr1-152540717-4	chr1	152540236	152541236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	84481.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.96826105837947	7.89674220741801	7.45425175385117	7.65925562554109	7.97549322532369	7.7734726188181	0.0172824571513281	0.945914189422333	0.98796006280508
Merged-chr1-39578098-2	chr1	39577598	39578598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-751.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	8.42425997525362	8.82247222728438	8.33612818964193	8.4998940043504	8.73883192930734	8.34212601441967	-0.0117602995727882	0.961961883387535	0.990691557558141
Merged-chr5-129846971-4	chr5	129846469	129847469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026445)	promoter-TSS (NM_026445)	-21.0	NM_026445	67902.0	Mm.103546	NM_026445	ENSMUSG00000025538	Sumf2	2610040F05Rik	sulfatase modifying factor 2	protein-coding	3.97823501023095	4.23385963248913	4.56249311841639	4.48400764411233	4.28763875992422	4.29899448065606	0.239194648659172	0.623323878577201	0.891380356166716
Merged-chr11-22853557-1	chr11	22853057	22854057	+	681.0	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	6178.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.10998718292573	3.90909801535348	3.83325552562652	3.80355538591449	3.83611678985762	3.79836607535831	-0.45947556404389	0.374613908760278	0.758118627242714
Merged-chr13-60660843-4	chr13	60660321	60661321	+	988.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	58610.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.4200383247339	6.47563697130371	6.39679636355619	5.41121065032026	5.17771314758991	5.42013912693317	-1.98085938640155	1.25440035253044e-10	1.64891223591395e-08
Merged-chr19-46508563-2	chr19	46508063	46509063	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	6915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.48977598348622	5.51663716332374	5.98933408129525	5.96550521004278	5.73353225839728	5.91650915378736	0.36210977983404	0.282572889912432	0.680451612659422
Merged-chr8-22934619-4	chr8	22934107	22935107	+	837.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 16 of 17)	intron (NM_001081149, intron 16 of 17)	-40229.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.3969104315223	4.30198490711823	4.2820288284681	3.88310052956516	3.57421414395752	3.92526873607388	-1.63083075086939	0.00161921374673203	0.0262839518997422
Merged-chr5-135951273-4	chr5	135950827	135951827	+	857.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16686.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	4.13253451300603	4.06866575743746	3.79415283044736	3.86694741187379	3.8760797883461	4.11395971796396	-0.192679013447395	0.708749079896751	0.92375127577894
Merged-chr16-91612085-2	chr16	91611585	91612585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6914.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	6.7789504061479	6.55588743640515	6.22129098643449	7.90683378903129	8.01426056629441	7.23706610276625	1.82608929566439	9.06712719571791e-09	8.29378247760395e-07
Merged-chr11-21091178-4	chr11	21090691	21091691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023324)	promoter-TSS (NM_023324)	-133.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.03274454750343	7.09119351682568	7.10137327384683	7.11792935712675	6.83330441710142	7.05722292759619	-0.108719473149399	0.658779694987937	0.905072911096446
Merged-chr2-181290483-2	chr2	181289983	181290983	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2517.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	4.98958968325708	4.90862640874828	5.320584895133	5.86544617183744	6.08295744949913	5.70279318456752	1.60206556691568	4.93578536865119e-06	0.000219038308775855
Merged-chr11-101559250-2	chr11	101558750	101559750	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 4 of 23)	intron (NM_008676, intron 4 of 23)	6596.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	2.82717631629404	2.92166005933006	3.32968777569527	2.85565804313498	2.73806412110856	3.39954880058533	-0.0554115877517833	0.943040960166524	0.987249342159685
Merged-chr16-21638853-2	chr16	21638353	21639353	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	55812.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.29284969532541	6.39486126259871	6.70566479030832	6.1806403085748	6.42258181425873	6.50988111781613	-0.147808524771984	0.61235192396635	0.886694626735313
Merged-chr1-153914074-4	chr1	153913586	153914586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14157.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.32020249399143	5.51625264202659	5.63966670094838	5.46210693840883	5.41169391395744	5.54059461958167	-0.0449286133763021	0.893333162144116	0.975235709206083
Merged-chr18-79995795-4	chr18	79995243	79996243	+	949.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-51152.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.17341344272091	3.86565434269973	4.11415010832676	3.7623664421004	3.46398352128045	3.90242814258952	-1.09436032593344	0.0484893337666763	0.279334013019773
Merged-chr2-145740894-4	chr2	145740408	145741408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	L3|LINE|CR1	39713.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	7.40547813531615	7.47994183993872	7.33955612910868	7.29243736262574	7.28962574615339	7.13377639038406	-0.247873922306624	0.282525674788052	0.680451612659422
Merged-chr4-9642241-4	chr4	9641748	9642748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1469.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.86294852368279	5.40628098235537	5.42759259427776	6.5134795665791	6.74081565139973	5.80403277769716	1.4271775027943	0.000175039903367753	0.0044938970316026
Merged-chr17-37276092-4	chr17	37275587	37276587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	4331.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	5.2035847767439	5.16010889946694	5.66953549332494	5.52663782978156	5.79832167158394	5.87396475053555	0.736929614829354	0.0398219203144239	0.248272784056571
Merged-chr14-47473096-4	chr14	47472580	47473580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030236, intron 1 of 1)	CpG	519.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	8.72725095671377	8.58402735376237	8.22004000691482	8.41886877855007	8.16042721864351	8.23605105858352	-0.359049513865893	0.130304906200656	0.48252828816841
Merged-chr10-61680259-4	chr10	61679782	61680782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-3.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	8.60940046705208	8.28287161134373	8.11908499776112	8.49069118405292	8.29170031865775	8.15370470416114	-0.0516506359518502	0.831107117437711	0.960409172059259
Merged-chr14-76152265-3	chr14	76151768	76152768	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41377.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	7.39018124034418	7.92161500972622	7.55044045985132	7.65931729874827	7.80650022430817	7.53733578138448	0.0454009337107347	0.860631509431682	0.967588655430938
Merged-chr3-81932658-4	chr3	81932156	81933156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	55.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	7.65215536411767	8.08528933108382	7.65124756631954	7.79362686377222	8.08032557272393	7.58103062242507	0.0346133941006901	0.896380354925205	0.975806926657291
Merged-chr11-106614451-4	chr11	106613954	106614954	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1524.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	7.78502727888146	7.59521050284559	7.36546681305168	7.61327654988369	8.14501070697233	7.44520740288998	0.264160976014165	0.354940080511347	0.741970720468217
Merged-chr19-46503623-8	chr19	46503188	46504188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2040.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.16792312034909	7.88638458417247	7.97493433264642	8.07285677870831	8.08516929778074	7.93100032685813	0.0256049594076024	0.90752129726361	0.978939051225517
Merged-chr7-45094244-2	chr7	45093744	45094744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 5 of 6)	B3A|SINE|B2	-2031.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	3.8760163291405	3.53599232612648	4.12997667628254	3.53759805800967	3.38253501566403	3.5849539010756	-1.24267261941141	0.0369158321282882	0.236777959838879
Merged-chr4-152039333-4	chr4	152038828	152039828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	7.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	5.08288650798736	5.20949341969723	5.35480468972095	5.35070155534732	4.72864006241437	5.13758234906438	-0.255502585950996	0.523877109396726	0.848428438699863
Merged-chr12-28674863-1	chr12	28674363	28675363	+	793.5	f1_balb.idr	promoter-TSS (NM_134052)	promoter-TSS (NM_134052)	-344.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	5.24973312202675	5.48713276995265	5.26707264084606	5.75702613112277	5.88466552228767	5.74381159476601	0.853216907502966	0.00942148400569804	0.0965321108534039
Merged-chr17-24171944-4	chr17	24171437	24172437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2259.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	8.18523404705337	8.223180349888	8.00468715829794	8.42311337747245	8.96125707730069	8.21220234878707	0.609783480153054	0.0226211822062716	0.175192044770984
Merged-chr1-26688133-3	chr1	26687618	26688618	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-658.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	3.40842376282708	3.86650467293512	3.78114887144874	3.61217042805748	3.39705522073917	3.59439262201952	-0.578503957174132	0.328308972448473	0.720561642210714
Merged-chr17-26464170-2	chr17	26463699	26464699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44273.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.59667682671409	6.1812025965631	6.14637462282133	5.68438886726469	5.52507832995013	6.43844805746276	-0.103788435188095	0.796222055639555	0.951410019719943
Merged-chr4-145111834-1	chr4	145111334	145112334	+	788.666687	f0_balb.idr	intron (NM_001276465, intron 35 of 69)	intron (NM_001276465, intron 35 of 69)	78832.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	2.52007724706192	2.52188109135503	2.99233729652254	2.62899286724118	2.41043535819795	2.8981840566509	-0.183193922973385	0.826533373809916	0.959136713258354
Merged-chr4-128961859-2	chr4	128961359	128962359	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172875, intron 2 of 10)	intron (NM_172875, intron 2 of 10)	596.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	4.68266238122695	4.44564361974274	4.45197179755502	4.96009638490889	4.57415381640426	4.33192322843613	0.286627194467456	0.532233971010579	0.851971173271146
Merged-chr9-75542139-3	chr9	75541638	75542638	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17519.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.90927532707621	3.78944204372346	3.5895059949395	4.07591146398748	4.14027727524793	4.13383162493133	1.02843162259806	0.04936837939366	0.282384279410715
Merged-chr10-60341354-4	chr10	60340889	60341889	+	842.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	MTEb|LTR|ERVL-MaLR	-5462.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	3.83614597059921	3.55446471626025	3.56051751308085	3.46875673187149	3.21564121325107	3.46702319334504	-1.06028674923348	0.0794997627277248	0.372824001411741
Merged-chr9-13559040-4	chr9	13558562	13559562	+	803.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60927.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.82826633513395	3.93579331798952	3.68105402781573	3.55303157328959	3.83753182006363	3.64223558480583	-0.438057786075321	0.429359277267024	0.795682190695026
Merged-chr18-82691114-2	chr18	82690614	82691614	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	(CA)n|Simple_repeat|Simple_repeat	1620.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	3.48407701592875	3.2283229718995	3.64277133505333	3.47920819287082	3.27174220193838	3.45341240975552	-0.209498053188609	0.732855923446917	0.931916782998743
Merged-chr1-74392659-4	chr1	74392176	74393176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153088, intron 1 of 6)	intron (NM_153088, intron 1 of 6)	1067.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	7.1201071192545	7.2670785880107	7.41503561279793	7.46377428839373	7.45903178487078	7.61683768677803	0.360981141210436	0.125545522483458	0.474177845108014
Merged-chr4-148140372-8	chr4	148139831	148140831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027985)	promoter-TSS (NM_027985)	-159.0	NM_027985	71890.0	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	7.71999059687736	7.9217965309912	7.65221779348929	7.87662162520978	8.10581662620133	7.75442002099515	0.219200346898201	0.351334138184474	0.739233270938645
Merged-chr1-82724399-3	chr1	82723896	82724896	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	-494.0	NM_001310697	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	5.67497097418533	5.59612723815819	5.25741188547465	5.5107178751434	5.70923156215945	5.51469150545392	0.101033508063666	0.76791582415723	0.942753355872352
Merged-chr15-98677589-4	chr15	98677083	98678083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172612)	promoter-TSS (NM_172612)	-122.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	6.60431359216037	6.42751291539957	6.29372994034691	6.90066648518075	6.76614495286089	6.26889933335719	0.369145418007104	0.22368842948509	0.618447374567053
Merged-chr16-44991144-4	chr16	44990638	44991638	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47460.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	4.1341612022919	4.06932540693017	3.88101779142425	3.77286026678505	3.87806557983969	3.95093393730819	-0.523705956782435	0.302860463262228	0.699545120672982
Merged-chr15-79547517-2	chr15	79547017	79548017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	-776.0	NM_199080	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	6.28477208205366	6.44562202561577	6.2996591745962	6.51815013082672	6.58017444966561	6.66267057256915	0.382916846540053	0.150204454991264	0.517096081543778
Merged-chr6-122636897-2	chr6	122636397	122637397	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	10473.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	5.60542638887328	5.30289150788599	5.48392892074411	5.78641185647494	6.01511789218065	6.19094228005593	0.969635718657717	0.00328902254364099	0.0450861594417264
Merged-chr7-105400192-4	chr7	105399683	105400683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242363)	promoter-TSS (NM_001242363)	-129.0	NM_001242363	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	7.45099083079201	7.50390179350356	7.26133278255366	7.50886326882484	7.42868883529812	7.58296441520551	0.130132475528298	0.572607234530841	0.869896838396072
Merged-chr1-171409363-3	chr1	171408873	171409873	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005508, exon 12 of 12)	3' UTR (NM_001005508, exon 12 of 12)	-1940.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	5.17653130493344	5.38764695302146	5.29741192413562	5.38834280326423	5.35131096717757	5.61766120779924	0.309711627157562	0.370183000135284	0.754659620620754
Merged-chr16-29579325-4	chr16	29578827	29579827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199177)	promoter-TSS (NM_001199177)	-7.0	NM_133752	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	6.46825364289028	6.62618073583399	6.45572047573581	6.68304597005528	6.7797505536507	6.62123048983727	0.28372111470984	0.275751514022972	0.673242318833586
Merged-chr7-30413829-4	chr7	30413339	30414339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	51.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	8.46751023855409	8.63974369325548	8.36972604186034	8.56794830048182	8.88360065941968	8.54913453822649	0.249835015332757	0.263588550484422	0.661479509868437
Merged-chr2-52959870-2	chr2	52959370	52960370	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	102002.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.70184683707044	4.62192476405218	4.49302141816825	4.32252560848679	4.7547606747951	4.94049169557574	0.191203629546013	0.669180289322442	0.909555253584595
Merged-chr4-128732845-2	chr4	128732345	128733345	+	684.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	B2_Mm2|SINE|B2	5274.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.03667073044091	5.98198586520251	6.01411206429471	6.09005885818389	6.20100143005611	6.02913681121212	0.179465300046121	0.530712373041775	0.851304720575858
Merged-chr3-54358573-4	chr3	54358060	54359060	+	908.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2547.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	5.91798471690192	6.11570268593041	6.11913723614703	6.26681848861147	6.50548488340455	5.94625543609991	0.375887489201783	0.22691593445989	0.621890618706186
Merged-chr8-36685471-4	chr8	36684899	36685899	+	937.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	47655.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.6663999561023	3.79131171118344	3.93900957325078	3.32880567314254	3.03549232143403	3.67652412612114	-1.60294246694377	0.0161490478131255	0.139739155914461
Merged-chr3-68976230-4	chr3	68975748	68976748	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 5 of 19)	intron (NM_026641, intron 5 of 19)	28322.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	4.2556572487906	4.70327779137882	4.50780462174606	4.46953785333247	4.48321255282483	4.35637484046724	-0.159042214503899	0.724830856948577	0.929475409375828
Merged-chr4-117131666-2	chr4	117131164	117132164	+	913.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 7 of 15)	exon (NM_013807, exon 7 of 15)	2299.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	3.24050061718829	3.2113455132437	3.23734277554767	3.04128765197805	3.11681125695207	3.61844499439595	0.192273035889387	0.773895946281252	0.944233330875351
Merged-chr18-62192230-4	chr18	62191738	62192738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12138.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.64431873411125	6.53256557375247	6.59303340139027	6.66107774304341	6.70749308121715	6.45550528085605	0.0487643483610761	0.85238489771128	0.965378390789581
Merged-chr6-143167873-3	chr6	143167365	143168365	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	CpG	635.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	7.63402132848715	7.60225797185697	7.38530609572871	7.85047315332029	7.62626791471988	7.21494299816567	0.070853700385101	0.789310714844675	0.949185119315475
Merged-chr2-172398184-4	chr2	172397680	172398680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	4386.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	5.4796540652198	5.24263797041587	5.13508262241783	5.43756996646293	5.48487733228076	5.12852268416757	0.136052886921857	0.707924381160056	0.923606271223831
Merged-chr3-95521399-4	chr3	95520884	95521884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5402.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.74438535157136	6.3962382969014	6.80934966887904	6.79014151415399	6.62883784873938	6.93718134209435	0.201497213678347	0.469281502055894	0.818943090863774
Merged-chr5-92485067-4	chr5	92484570	92485570	+	902.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	20587.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.86654649044964	4.88327970339772	4.93284887206736	4.76820854027727	4.65987845385968	4.61133142901482	-0.478529950219466	0.222988331265789	0.617835308211147
Merged-chr11-90492778-4	chr11	90492264	90493264	+	930.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101847.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	4.35479225153863	4.26829726057913	4.17683826839537	4.27947489728195	4.72937148446085	3.984497399373	0.292878958393605	0.570188352935104	0.869072933274727
Merged-chr5-129925053-4	chr5	129924580	129925580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16540.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	4.97100099443462	5.2912761472455	4.50433732907624	4.32321844207399	4.39368392869624	4.05525836376661	-1.67383468584286	0.000784712438470302	0.0149586145659191
Merged-chr18-60729312-4	chr18	60728806	60729806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1740.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.87215751086708	7.17902999996028	6.95779088647029	7.03951639615415	7.24157659162245	6.93057993275845	0.109524647703355	0.671467775844002	0.910528012497292
Merged-chr10-42862460-4	chr10	42861948	42862948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	1936.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	4.66952396265332	4.99309212778152	4.99569517347783	4.92542538460186	4.85010236728103	4.9193783721846	0.0111253641526855	0.977382946716862	0.994777931457153
Merged-chr2-117404722-4	chr2	117404231	117405231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61854.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.84475774055619	6.76638434601566	7.06181301576759	7.12022278573242	7.46760216415533	7.14488116808241	0.564144081160453	0.0298064177860301	0.207977560682599
Merged-chr14-120909863-2	chr14	120909363	120910363	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1331.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	2.98198859207102	2.98198262982773	2.77471112827556	2.916102700843	2.79271789068284	2.97316826159553	-0.142477209311904	0.840267183293397	0.962819298477451
Merged-chr10-10555033-2	chr10	10554533	10555533	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3174.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	6.65583170248742	6.88067841495102	6.65009166029965	6.88446400617357	6.92320115938684	6.70891130344673	0.171486106809271	0.507338628140633	0.838967570947531
Merged-chr7-127376096-4	chr7	127375602	127376602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175560)	promoter-TSS (NM_175560)	-52.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	5.45295345838942	5.75095276078311	5.68909264380575	5.50377678783374	5.27282603006248	5.50714324988647	-0.402219932060092	0.23385043944938	0.630121355137759
Merged-chr8-64946626-4	chr8	64946113	64947113	+	957.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028427)	promoter-TSS (NM_028427)	-572.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	6.49446264190267	6.69434563914915	6.48643629606284	6.74233354160816	6.9942111164419	6.41156683739312	0.293853398244683	0.310898353070947	0.706153577614439
Merged-chr10-59736210-4	chr10	59735721	59736721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33658.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	6.67499927067726	6.76232036493287	6.81715994426892	6.16278620664161	6.54741682790296	6.37807159686025	-0.592451388660287	0.0319434455002061	0.216861938514763
Merged-chr4-32274967-4	chr4	32274464	32275464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142471.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.39719255068013	5.29318443499909	5.36862086800581	5.00158903991196	4.87865066940821	5.08133162049651	-0.770781161084209	0.0308572997599145	0.2126003310775
Merged-chr5-125274405-2	chr5	125273913	125274913	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	66681.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.12384050548687	4.38713153773764	4.96199178364426	4.83726432150729	4.38422254243151	4.95844525252923	-0.26630015858952	0.579475967391806	0.872539716783315
Merged-chr19-41911799-4	chr19	41911301	41912301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023418)	promoter-TSS (NM_023418)	-70.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	6.89748037627012	7.34994865758461	6.93928058706943	6.6997798460544	7.01048164459644	7.02472143686443	-0.252039890735327	0.364527004096374	0.74990409323904
Merged-chr2-121957139-2	chr2	121956639	121957639	+	742.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_212450, intron 1 of 12)	intron (NM_212450, intron 1 of 12)	-1047.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	5.77888606880422	5.86927015919874	5.94640750832859	5.81852939219941	6.17265645289282	5.88817441384301	0.206328790129905	0.505677172138553	0.838177729332582
Merged-chr15-51727962-2	chr15	51727462	51728462	+	994.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	137499.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	2.37607613395123	2.47702369472524	2.53940219621763	2.47588948532562	2.30783729510804	2.67391179792475	0.149920569240715	0.854861770221123	1
Merged-chr2-145834245-2	chr2	145833745	145834745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	48129.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.33528428821317	4.14889216750109	4.49638582298685	4.05749888427084	4.38405952394972	4.1750727533745	-0.285285132862502	0.55263609468283	0.861817968703681
Merged-chr1-86396828-2	chr1	86396328	86397328	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7467.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	3.16018611671448	3.34315604797949	3.66080258118272	3.68513294594501	3.48967921525541	3.73017758422798	0.871734087967729	0.15736729259721	0.528623968470245
Merged-chr8-3649022-4	chr8	3648528	3649528	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6742.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	3.98294862444947	4.34897002751981	4.81068377329522	4.58685293585458	4.53339152892919	4.58323425849043	0.374895843975435	0.451397755946183	0.809039968738977
Merged-chr9-124145819-2	chr9	124145319	124146319	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	24276.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	4.94222764709499	5.01470160258779	4.89466091474426	4.93923367929829	5.04984328431166	4.92281010572386	0.0476003998758077	0.898670847963181	0.976412570901119
Merged-chr15-94591541-4	chr15	94591055	94592055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	6.91680056675661	7.38677268376458	7.27765483300402	7.20677653994133	7.5721552033255	7.46315771906455	0.320931843562872	0.228710521708128	0.623993215630202
Merged-chr12-20230562-2	chr12	20230062	20231062	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	585217.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	2.84796209465368	2.83310763925113	3.12187727682354	2.71281048862016	2.68837479955546	3.13883850892406	-0.383521198456386	0.609371383530766	0.88517286252283
Merged-chr6-97445309-4	chr6	97444766	97445766	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14020.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.26387670160217	6.35777170274004	6.31610265637478	6.31192164113971	6.2252607774195	6.43171844945477	0.00830064545584517	0.975774794694829	0.994540154302743
Merged-chr11-116087045-4	chr11	116086550	116087550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-55.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	8.46720662859148	8.30229351395943	7.68367972412874	7.92523761875208	8.27373123664335	7.8320382323947	-0.240705500366566	0.400963879955563	0.777103918275977
Merged-chr7-99530073-4	chr7	99529571	99530571	+	802.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-5415.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	4.42069418073206	4.10847294081477	4.42926739760481	4.243276580807	4.13562728479523	4.7148206668441	0.146413759259383	0.767605087648012	0.942632370096753
Merged-chr2-120150960-2	chr2	120150460	120151460	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	3615.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.51459141668939	3.64134045121665	3.58311490987972	3.49008119437851	3.45064293413942	3.60042730524724	-0.257026962437977	0.648839506673103	0.901963404198945
Merged-chr4-45406567-1	chr4	45406067	45407067	+	552.0	f1_balb.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	2199.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	3.51242097497976	3.5328673446653	3.59010715853781	3.9465706830766	3.56805005409095	3.60678082229028	0.604659781891424	0.286911106498687	0.684283975852521
Merged-chr10-94573662-2	chr10	94573162	94574162	+	678.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	-1595.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.82713481838757	4.56884167265904	4.42586471766834	4.71196979487961	4.58994595449889	4.49469423083478	-0.0529764872601359	0.902310146148555	0.977439591001363
Merged-chr17-35200630-4	chr17	35200121	35201121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278601, intron 2 of 2)	intron (NM_001278601, intron 2 of 2)	1386.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	7.19985676900604	6.82587628854083	7.02246046853556	6.82738706720866	6.75803695297696	6.91790500828745	-0.298243056804166	0.248866364204266	0.645843447218383
Merged-chr4-19604692-4	chr4	19604184	19605184	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 8 of 9)	intron (NM_025476, intron 8 of 9)	29618.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	3.83827248445485	3.92674192687991	4.08926013004549	3.9604887263894	3.66295662307087	3.97257892766617	-0.262377732129902	0.617101072092667	0.888717787419226
Merged-chr9-57589496-4	chr9	57588995	57589995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027895)	promoter-TSS (NM_027895)	43.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	6.80985916532235	6.64624045534494	6.69190669640955	6.80005152260152	6.71022070972186	6.21781281408316	-0.166522571082003	0.565064878282931	0.866552670637515
Merged-chr7-127185773-2	chr7	127185273	127186273	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10304.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	5.58318271440551	4.73326969230596	5.01255473427169	5.22577586840941	5.25638513555547	5.18409524404872	0.108766513748681	0.798780166836155	0.952063885260145
Merged-chr1-175626209-4	chr1	175625867	175626867	+	900.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-732.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	5.65167722659649	5.71971159863987	5.50838687821518	5.32803477130656	5.7156668903118	5.32116207091813	-0.283528334893223	0.414503307430619	0.785828006486374
Merged-chr16-91852964-4	chr16	91852466	91853466	+	957.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	L2b|LINE|L2	78664.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.86275825493128	6.85726847308924	7.09771513051014	6.70656238657614	6.69289286623826	6.77627763368704	-0.332396811760337	0.18764595042629	0.572830621237508
Merged-chr17-50975137-1	chr17	50974637	50975637	+	583.0	f0_balb.idr	intron (NM_028162, intron 4 of 21)	L1_Mus4|LINE|L1	184241.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	2.47001571501172	2.56173897953418	2.59678535361623	2.53235399698677	2.4256570338845	2.67001690067834	-0.00722551135411673	0.992634064031843	1
Merged-chr17-47523571-4	chr17	47523061	47524061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	18510.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	6.32309615787869	6.16009231840023	6.06481843461494	5.93049717631611	6.06731294027932	5.60106128772855	-0.507361284291059	0.107890461904347	0.438675585418016
Merged-chr11-52099390-4	chr11	52098874	52099874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	CpG	550.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	9.8941199214544	10.1261189971064	9.57511073659987	9.71816378411342	9.79372339526472	9.52585324279838	-0.272197429842075	0.233349393740029	0.629691466006822
Merged-chr9-111118354-8	chr9	111117878	111118878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164838, exon 1 of 15)	5' UTR (NM_001164838, exon 1 of 15)	267.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	8.38178199453727	8.44530225870799	8.12313424839334	8.09866514694478	8.01036812555271	7.75829133756489	-0.507081823888652	0.0280642284915664	0.20030608374732
Merged-chr1-97650265-3	chr1	97649768	97650768	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	11408.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.57056874987134	3.33637367727508	3.76794398072599	3.59726992255897	3.3787990324198	3.88281979549242	0.222912773785472	0.714273895488706	0.925838899209026
Merged-chr13-100016427-2	chr13	100015927	100016927	+	976.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-788.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	3.70071304465369	3.64922917696244	3.27745181787743	3.55199194928333	3.34377568966267	3.63770994833175	-0.182607563225741	0.76597944055733	0.942315542034148
Merged-chr3-133545187-4	chr3	133544687	133545687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-797.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	7.73188348193254	7.70709262005007	7.68487521592619	7.48570811719421	7.43362832806338	7.7671923316659	-0.21166961968791	0.358050872324524	0.74454984718519
Merged-chr12-71018157-2	chr12	71017657	71018657	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 2 of 23)	AT_rich|Low_complexity|Low_complexity	2190.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	4.71956420350497	4.72500358453929	4.70171019364936	4.80807245288782	4.97232326152397	4.68682268619295	0.278856546573428	0.483828060903656	0.826584678003739
Merged-chr15-100637910-3	chr15	100637510	100638510	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1070.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	5.72601685170614	5.75598402532352	5.94943802590949	5.81603164462509	5.77520958421974	6.19706939247867	0.220642516998834	0.491156991521627	0.830447418157472
Merged-chr18-32165166-2	chr18	32164666	32165666	+	553.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	2077.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	4.04644852750992	4.11871159999595	4.19023892814336	4.25058485272963	4.02008164696075	4.07110241428285	0.000436048265038399	0.999273685313471	0.999910586345539
Merged-chr7-123242483-4	chr7	123241992	123242992	+	824.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 6 of 16)	intron (NM_146198, intron 6 of 16)	27626.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.92413040975247	4.16710564003748	4.24585581431332	4.42854709515834	4.5407830631939	4.26847577609499	0.839681808356066	0.0749478710513876	0.360352620735228
Merged-chr7-43672468-3	chr7	43671989	43672989	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	458.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	6.2817369416682	6.46628153535504	6.67965581133646	6.96094647448245	6.83122289508191	6.70676397929392	0.575560232917987	0.0343000322936444	0.2267393904899
Merged-chr4-41738503-4	chr4	41738001	41739001	+	759.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	2858.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	3.51033063284198	3.73547672305759	3.81197297034967	4.01296217879551	3.43960397182515	3.78125913713245	0.245058659727758	0.676868259261186	0.912576714783976
Merged-chr11-103268574-2	chr11	103268074	103269074	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1173.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	3.73817095665595	3.80668690397344	3.84203080950655	3.67802100119706	3.51832329207356	3.95770805406705	-0.247578529830228	0.653450245342176	0.903374227660526
Merged-chr8-75093615-4	chr8	75093114	75094114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-4.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.55910025595473	7.63981278732914	7.47314344891452	7.44979571583498	7.81653405531423	7.43497675598548	0.0386941631143694	0.873880950609554	0.970492962848917
Merged-chr7-132237770-3	chr7	132237266	132238266	+	921.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360768, exon 8 of 8)	3' UTR (NM_001360768, exon 8 of 8)	-77898.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	4.38443617405645	4.55632978127187	4.8518242142188	4.19621048647022	4.40814420088345	4.55264300315799	-0.530884433585136	0.247021405408768	0.644045601901006
Merged-chr12-73304089-2	chr12	73303589	73304589	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	17241.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	5.23984159945913	5.27044048445241	5.21627353966405	5.07750161249855	5.24140378722081	5.27996436441941	-0.0867322108938101	0.804300251502511	0.953645244705356
Merged-chr11-121235099-2	chr11	121234599	121235599	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2137.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	3.67783175797926	3.73732394329492	3.71013837170384	3.94189157273398	3.63044594817184	4.02497245480339	0.514397876634471	0.343510027359951	0.732367959280244
Merged-chr10-60351977-3	chr10	60351492	60352492	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	5141.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.92178112151986	4.77364704026589	4.87309278126521	4.6071580732347	4.49709926961333	4.79178749408182	-0.536157692248883	0.185427812464684	0.569485749808491
Merged-chr17-50361921-4	chr17	50361414	50362414	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68294.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	2.64837869949454	2.54058557687814	2.81178009432589	2.77198626546703	2.62174122242106	2.94244305258059	0.600841659497035	0.428109051048931	0.79490623370532
Merged-chr1-191115810-6	chr1	191115281	191116281	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	17367.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.30845954020288	7.18471269775263	7.11636196469186	7.26696821281264	7.46996466840975	7.38459672743115	0.25226389338213	0.283968225843631	0.681611557612887
Merged-chr7-97337711-2	chr7	97337210	97338210	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	5387.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	3.74448512694218	3.51696678320226	3.59668655709634	2.97011677013986	2.9982678455284	3.34470784038194	-2.20966942941005	0.00126262115690311	0.0215851962777009
Merged-chr16-57549820-4	chr16	57549320	57550320	+	978.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	578.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.60451873222723	8.75211500585576	8.22709022880007	8.39671889906402	8.60665564142051	8.15854710660551	-0.202809145620258	0.418612948547573	0.788726823651631
Merged-chr12-3799756-4	chr12	3799241	3800241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7239.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.37494260297324	5.31477215990385	5.33872452035996	5.77495606173278	5.38627105563627	5.49370814662162	0.418193078665201	0.222954455624561	0.6178098555884
Merged-chr3-20028816-4	chr3	20028343	20029343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	6467.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	5.89640258901253	5.856264987435	6.25027703380689	6.03086052019893	6.13771181153408	6.55165363924783	0.421698653009133	0.191713724254451	0.57849920463334
Merged-chr8-77450870-2	chr8	77450370	77451370	+	556.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030113, exon 2 of 23)	exon (NM_030113, exon 2 of 23)	-66186.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	4.90806712755595	4.49815220483718	4.63598853753026	4.62399918187283	4.41905044269584	4.1473338054095	-0.674295216617045	0.147265484665214	0.51213793055522
Merged-chr6-82714418-4	chr6	82713913	82714913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60041.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.70410253716474	2.59937740445744	2.77011245518374	2.74630503821436	2.81918547224024	2.8429307872809	0.601961489014694	0.408219967841021	0.781982251625038
Merged-chr1-9860078-2	chr1	9859578	9860578	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	ERVL-B4-int|LTR|ERVL	11797.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	2.17270344901347	2.10621944444689	2.12026522520794	2.31625470492777	2.13867587090662	2.52065844710529	1.36478915263508	0.131362267615916	1
Merged-chr10-95940643-4	chr10	95940118	95941118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-45.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	7.84304317604201	7.81113586113264	7.65746378034743	7.76521969652861	7.62353566879939	7.08904018745937	-0.348741906019953	0.193316113919317	0.58042547704774
Merged-chr13-20180745-7	chr13	20180106	20181106	+	975.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	90099.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.20169023666256	6.19452965238541	6.40542352644461	6.38638172409346	6.23213467232969	6.19122266951272	0.0184803449782482	0.947436280760942	0.988008807662239
Merged-chr2-27416690-2	chr2	27416190	27417190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	10918.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.75282799526837	4.70632517207814	4.77636617465748	4.78059955037721	4.69051744706846	4.87830380225008	0.080363332138826	0.838428027906656	0.962518552953479
Merged-chr2-165907296-3	chr2	165906820	165907820	+	661.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-22482.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.10343213721851	2.90291833124948	2.83452824415207	3.4075674776625	3.01017038238264	3.10319054540091	1.01391638611008	0.153572408317771	0.522532447327076
Merged-chr15-78405864-3	chr15	78405336	78406336	+	821.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	23.0	NM_009437	22117.0	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	4.19843222029039	4.54038998285204	4.62746907344587	4.3164098550057	4.31333903350285	4.45584273876294	-0.266133893704527	0.560098260070104	0.865168135946323
Merged-chr3-106547784-4	chr3	106547292	106548292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-6.0	NM_001286986	67171.0	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	8.19324663745466	8.22534927370028	8.09553289291529	8.19984596581299	8.4302603111445	7.93220901324165	0.0528946586934116	0.820990102115294	0.957917721861197
Merged-chr3-96577468-4	chr3	96576968	96577968	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001293701)	TTS (NM_001293701)	-10667.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	8.16965275410747	8.00112844689175	8.02488274268661	7.97431244307266	8.45770511568644	7.89458275518107	0.106174928191511	0.673363844014327	0.91137087629305
Merged-chr9-7868992-4	chr9	7868472	7869472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4198.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	7.71657165657834	7.95039178765459	7.82195640229667	8.02846695058261	8.24024862872713	7.97336538301642	0.36690884517033	0.102617800936195	0.427208784725015
Merged-chr4-129024963-4	chr4	129024475	129025475	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31751.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	4.21078400576585	4.15218654893821	4.32288478148839	4.15485928540113	4.32097925073212	4.69973304508414	0.466135247282754	0.328091242791433	0.720292766158929
Merged-chr5-72559774-4	chr5	72559280	72560280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133921)	promoter-TSS (NM_133921)	-135.0	NM_133921	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	6.38052943281022	6.27692954117314	6.13486556889236	6.33994447782707	6.30905250270136	6.52323687493233	0.185705583731376	0.505746296098476	0.838177729332582
Merged-chr10-7260617-3	chr10	7260092	7261092	+	899.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48355.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.8004296978566	4.66635801477095	4.6070968421593	3.87954927293456	3.94478793913062	3.98751310842838	-2.09916626630335	1.14390791385874e-05	0.000449397024062123
Merged-chr19-9915241-2	chr19	9914741	9915741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-15708.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.47173461933316	7.38670943485318	6.60871531749675	7.18691586213233	7.04213504748109	7.10483790030358	-0.166402215700553	0.588049265894933	0.876182349656829
Merged-chr4-126204298-2	chr4	126203761	126204761	+	695.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21A|LTR|ERV1	-1551.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	7.08483944592781	7.22910347439813	7.30746009663575	7.08929940935381	7.54696257364931	7.12687165698249	0.111831355966288	0.670836428757626	0.910185685979496
Merged-chr14-73472489-3	chr14	73471985	73472985	+	688.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37564.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	3.03341796333867	2.8967479962719	3.04607067616088	2.91075123960557	3.22310153444098	2.93668766593562	0.215750808988819	0.756076105942303	0.939527320894303
Merged-chr15-97907458-3	chr15	97906984	97907984	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 1 of 9)	intron (NM_009504, intron 1 of 9)	812.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	2.89812108079256	2.54681356274709	2.77497264480065	3.02404354659091	2.64303238712685	3.08755864230644	0.891727289756582	0.255008684327893	0.652024436103169
Merged-chr5-65860836-4	chr5	65860322	65861322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.67568272807542	5.21217016519034	5.20741010478138	5.70483721700545	5.52318883993109	5.79411651642894	0.525992050847109	0.144441076471119	0.507201767851488
Merged-chr2-180173405-1	chr2	180172905	180173905	+	630.0	f1_c57bl6.idr	intron (NM_019822, intron 3 of 9)	intron (NM_019822, intron 3 of 9)	1817.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	3.11324439628584	3.09577986122844	3.59735089239999	3.18013507193462	3.16628218456326	3.31039813482546	-0.257847776536224	0.69729270361842	0.919874864928276
Merged-chr8-84871526-4	chr8	84871003	84872003	+	726.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027954)	promoter-TSS (NM_027954)	-608.0	NR_031759	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	6.31492616754544	6.61097142961427	6.20814286631442	6.37602287127494	6.43360926006756	5.85440249383464	-0.224038926434804	0.485922329303577	0.827621590385476
Merged-chr10-127284321-2	chr10	127283821	127284821	+	759.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033072, intron 8 of 12)	intron (NM_033072, intron 8 of 12)	4697.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	2.03859215539964	2.00939705935435	2.24822717077259	1.91940595413452	2.00667262587652	2.19563788585874	-0.431467288231352	0.645944099859119	1
Merged-chr12-72759434-2	chr12	72758934	72759934	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1777.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	3.38975547328888	3.07274369450223	3.23013260276881	3.03383088230942	3.26361138168731	3.00062560833814	-0.532737655246091	0.432058080036598	0.797216457194801
Merged-chr13-80883885-2	chr13	80883385	80884385	+	891.6666869999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153410, exon 1 of 8)	non-coding (NR_153410, exon 1 of 8)	463.0	NM_001042591	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	8.07532713574066	8.72486595108581	7.79942593019294	8.12020513910423	8.87040126295715	7.84657365101612	0.133044429866964	0.815181527418757	0.956370078970016
Merged-chr18-82825706-4	chr18	82825207	82826207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30190.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.47955330548501	6.59919050430972	6.22537826538396	5.99922574717073	5.91864718883819	5.69348393001455	-0.957839923019475	0.00149553245144913	0.0246719277077732
Merged-chr17-57096281-4	chr17	57095770	57096770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-8488.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	4.28039244517632	4.24546092380138	3.92724699661768	3.97662342094288	3.98249338845268	4.09818223120096	-0.441939877323448	0.37153731694121	0.755652770238368
Merged-chr6-56704706-4	chr6	56704185	56705185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025520)	promoter-TSS (NM_025520)	14.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	5.466818936906	5.40803685045358	5.24979072699026	5.31445845885865	5.20021368499341	5.40748380199032	-0.163923281710561	0.633636603905779	0.896059441151508
Merged-chr19-42148469-3	chr19	42147972	42148972	+	847.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183195, exon 1 of 2)	3' UTR (NM_183195, exon 1 of 2)	1083.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	5.95795058878828	6.06597842616114	5.75314859301976	4.83557335305569	4.1909955416128	5.03522606549657	-2.50718958371403	9.23735815264391e-09	8.43712510609434e-07
Merged-chr19-55235613-3	chr19	55235180	55236180	+	680.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5556.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	5.02940904412093	4.88068107999292	4.7700557859383	5.00183786973057	5.16716441564783	4.837152429841	0.250937290679492	0.519575381654102	0.845844974891895
Merged-chr1-152521027-4	chr1	152520503	152521503	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 17 of 17)	intron (NM_016846, intron 17 of 17)	104214.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.164908925495	3.08140852900122	3.23636990497091	3.11594914828925	2.88355946793506	3.13833637603931	-0.511181996155428	0.441909094020921	0.803014502214766
Merged-chr3-95283461-3	chr3	95282962	95283962	+	899.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199475, exon 1 of 10)	5' UTR (NM_199475, exon 1 of 10)	527.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	6.9794290461637	7.09540683810368	7.00067242046414	6.63321785813836	6.58943745762245	6.69399717477326	-0.609158656482571	0.0133640731126098	0.12295420118908
Merged-chr4-102624323-4	chr4	102623851	102624851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34508.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.90826393289697	7.90202795165817	7.55707123424613	7.92036625242548	8.25319367071978	7.89504985873602	0.332457729291365	0.178062162483096	0.559118345790044
Merged-chr7-126747924-2	chr7	126747424	126748424	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-11702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	6.00852558337147	6.21483113975413	6.37490034974862	6.26393421173587	6.3369684016596	6.74045514781909	0.419304630419115	0.168671112101656	0.54534956551608
Merged-chr19-4169542-4	chr19	4169043	4170043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134148, exon 9 of 10)	exon (NM_134148, exon 9 of 10)	5936.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	6.41325680129454	6.53668397285828	6.51787224562566	6.04431397682208	6.47123377113715	6.25856540382371	-0.34470698957584	0.231411199586176	0.627309434603895
Merged-chr12-100088824-2	chr12	100088324	100089324	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23507.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	7.28765053417309	7.37516927443865	7.21976121462268	7.25451518769931	7.59752127529524	7.28909814777536	0.146529453795514	0.549375281062878	0.860273914502926
Merged-chr14-55541001-3	chr14	55540500	55541500	+	705.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028994, intron 1 of 9)	intron (NM_028994, intron 1 of 9)	734.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	4.14967417306513	4.11730578423907	4.39122616439413	4.27080720498343	4.36659762370598	4.41612515461712	0.365162317232843	0.425079946624765	0.792910821008578
Merged-chr11-60937824-2	chr11	60937324	60938324	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	5767.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	3.08728212389048	3.11954820903565	3.07738754710138	3.0854254809075	3.07749161340958	3.26345656507029	0.19228642585255	0.765550750030011	0.942148336413151
Merged-chr9-75432934-4	chr9	75432442	75433442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8582.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	3.82149922247621	3.67161256206035	3.92493976561426	4.27020960716634	4.02651991521489	4.35421897002831	1.23721497368637	0.0155977520920877	0.136401235531102
Merged-chr6-114781688-2	chr6	114781188	114782188	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	138591.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.60694414863182	4.56217539225867	4.75791301758419	4.37414263994028	4.33292284876074	4.38245241261677	-0.697009913653588	0.103353614005956	0.428463201325997
Merged-chr18-53262031-2	chr18	53261531	53262531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	C-rich|Low_complexity|Low_complexity	16369.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.88521144810255	6.8118695475195	6.35631056879317	6.75574842936102	6.9302511399727	6.45729889433003	0.036749147695481	0.902321134356324	0.977439591001363
Merged-chr11-69098135-1	chr11	69097635	69098635	+	647.0	f0_c57.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-814.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.76853056519506	8.61838995890074	8.54904824829812	8.33408491708537	8.53342640627923	8.41866943248087	-0.302562056636351	0.146154691018717	0.509946203339702
Merged-chr6-72163889-2	chr6	72163389	72164389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31D_MM|LTR|ERVK	-40692.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.88950225042333	6.88351211572863	7.11182918551952	7.04662629303118	7.21805288055202	7.05546526179823	0.235869736126211	0.338242292295434	0.728169120005134
Merged-chr12-8499442-4	chr12	8498921	8499921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007483, exon 1 of 1)	exon (NM_007483, exon 1 of 1)	588.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.95154749357475	8.14438481878438	7.83833759676222	7.96862466449406	7.8945005653681	7.78402121170963	-0.145780807272581	0.514763154548068	0.843210843733192
Merged-chr5-21220733-3	chr5	21220232	21221232	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34465.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.74067357015693	3.62079074795882	3.48583999274923	4.01877414936905	3.44283018750873	4.02398961495139	0.743961720829571	0.216634327942477	0.610110311708838
Merged-chr1-43521210-4	chr1	43520720	43521720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75469.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.47383094694488	5.62735693182442	5.29284627038389	5.51180961585117	5.6630956383398	5.70841929293762	0.275151991823695	0.409999161313501	0.783069600481425
Merged-chr11-98810079-1	chr11	98809579	98810579	+	1000.0	f0_c57.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	10.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	8.04234762338699	7.99618061034383	7.83835700403827	8.25511357382977	8.40861438778146	7.66618715992254	0.273201905199655	0.307875940192893	0.703919468897047
Merged-chr5-136583857-4	chr5	136583351	136584351	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16361.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	2.72950287484957	2.62361173665813	2.70594242612452	3.01481298310138	2.9021198449418	2.96686531913692	1.43115061201957	0.049159470572337	0.281763039618156
Merged-chr4-59436141-4	chr4	59435651	59436651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 1 of 16)	MTD|LTR|ERVL-MaLR	2482.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.09425554599788	3.99283120110181	4.32430630404818	3.92723917268228	3.89814352740261	3.8365969304881	-0.733595814217763	0.146387516266237	0.510331229700642
Merged-chr2-5597089-3	chr2	5596657	5597657	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	78889.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.29675807033538	3.9310143656419	4.21531474421144	3.61725357331499	3.57276155564169	3.46193420345286	-1.96152347481518	0.000594225605186263	0.0120595912576435
Merged-chr2-120967631-1	chr2	120967131	120968131	+	698.0	f0_balb.idr	intron (NM_009461, intron 1 of 46)	L2|LINE|L2	3084.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	4.56223113037163	4.33876735263767	4.15625879745364	3.67143733155072	3.57073425128849	4.08374412129197	-1.7724769805469	0.00121212301911265	0.0209336513437787
Merged-chr2-91237100-4	chr2	91236601	91237601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015464)	promoter-TSS (NR_015464)	-35.0	NM_028119	107986.0	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	6.52889571550976	6.4896570479767	6.66859338149987	6.48720739600602	6.75236741500686	6.59669812668904	0.101003572289932	0.703960227716706	0.922296896558746
Merged-chr3-58416039-3	chr3	58415520	58416520	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1300.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	7.45800375782139	7.80316430695611	7.6159209209377	7.4424366809653	7.43871521776553	7.59825893014298	-0.209877140197331	0.374379141615533	0.758058822552447
Merged-chr11-118223428-2	chr11	118222928	118223928	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L1MC4a|LINE|L1	-10686.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.27846782519692	5.34453763603582	5.52174680014592	5.0424094399507	4.93749632930601	5.68350240229293	-0.258583520190135	0.521812485764049	0.847249074393721
Merged-chr7-16101313-2	chr7	16100813	16101813	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2733.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	4.70894013863453	4.84764088439492	4.48212728569855	4.59248350807221	4.38121664451253	4.71512181272747	-0.329729802857894	0.445897358037226	0.805432049659428
Merged-chr1-4874755-2	chr1	4874255	4875255	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	Lx7|LINE|L1	16427.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	2.88424710302988	2.81086329045598	3.02143020838069	3.01708700848938	3.22019867091395	2.9112035361026	0.745045772286337	0.285773884629361	0.683240131512535
Merged-chr13-63566368-4	chr13	63565895	63566895	+	980.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008957)	promoter-TSS (NM_008957)	-660.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	3.74466305993215	3.681142371058	3.91961701321483	4.10121596658909	4.05940051716734	4.08404416975027	0.938133663505811	0.0635441993386477	0.328508277964565
Merged-chr15-36791827-4	chr15	36791318	36792318	+	958.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253807)	promoter-TSS (NM_001253807)	-886.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	6.11860589128871	6.55047239188942	6.63744477128994	6.17147362251541	6.46316230756704	6.42753303093472	-0.143229996345917	0.637422444835729	0.897347930665099
Merged-chr17-62627721-4	chr17	62627204	62628204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	253613.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.1008200286464	4.14889819855981	3.93587627858981	3.7337611912722	3.61796640054442	4.18958653108055	-0.635333409821507	0.246161912723607	0.643286900808482
Merged-chr11-61855053-4	chr11	61854568	61855568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013881)	promoter-TSS (NM_013881)	24.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	7.59359476937824	7.20451955096238	7.55656365551322	7.5666238006956	7.43928588289656	7.5850854885989	0.100793020494171	0.679771956251476	0.914056754309378
Merged-chr15-82147774-4	chr15	82147259	82148259	+	919.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	CpG	490.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	6.58244250724063	6.67023110306698	6.24944614874286	6.77001608263476	6.53855908657719	5.86193966810822	-0.101662627866398	0.770043086348283	0.943310056383255
Merged-chr9-45278280-3	chr9	45277846	45278846	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9197.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	5.67512827874665	5.39587727721631	5.43452363881988	5.64612661499884	5.76458171157393	5.49788112898034	0.25960105837762	0.436460042330604	0.799486950869076
Merged-chr1-106162762-4	chr1	106162237	106163237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040630, intron 2 of 2)	B3A|SINE|B2	8787.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	4.05975479876872	3.91816554314077	3.94073979187332	4.05831184844638	4.04375223501626	3.74385633396269	-0.0320311115989447	0.950245691702307	0.988400419899929
Merged-chr10-36971474-1	chr10	36970974	36971974	+	597.5	f0_balb.idr	Intergenic	Intergenic	-3070.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	3.72567288741386	3.7898008144751	3.84766011365759	3.51765061007489	3.55247592218058	3.76955210938743	-0.596291276242352	0.275290816573111	0.672767806197587
Merged-chr5-145191580-4	chr5	145191081	145192081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020582)	promoter-TSS (NM_020582)	11.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	7.08649939600819	7.583613712925	7.36535357465994	7.40286067530179	7.36428505329212	7.21588763804497	-0.0445925451056753	0.862394816223846	0.968069448476948
Merged-chr7-28170522-2	chr7	28170022	28171022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	intron (NM_007991, intron 1 of 8)	774.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	7.10365014977218	7.36897878016663	6.98543428881545	7.03268493035069	7.13665949705543	7.04351183231602	-0.14561195584038	0.562589359624981	0.865745518569294
Merged-chr5-105584167-3	chr5	105583664	105584664	+	650.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	64693.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.93784752359957	4.17603448807603	4.37365872804404	3.97029428077909	3.68471239899717	4.00593777547413	-0.836084524446547	0.110924390419126	0.444841551070303
Merged-chr1-16748279-2	chr1	16747779	16748779	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	59823.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	3.18992440234198	3.45825197014057	3.48197272265917	3.25846327306006	3.19111269228589	3.49991572686385	-0.254526504490858	0.684390060105154	0.915853993305035
Merged-chr15-83142986-2	chr15	83142486	83143486	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	6392.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	3.1994369268692	2.97009057475233	3.1618899789079	3.10959274511039	3.16905715132796	3.2894206035818	0.326899601376513	0.614079444383093	0.887411760755953
Merged-chr12-85533227-4	chr12	85532716	85533716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59326.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.95456472728013	8.83728276792538	8.40349300176586	8.55284006221871	8.98336552386167	8.42876089235794	-0.101579397653841	0.700571236100972	0.920931647342565
Merged-chr5-64295410-2	chr5	64294910	64295910	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	65053.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.68282385959357	3.78277883562924	3.9333430429768	3.82059629013815	3.49174662512532	3.80919030458619	-0.296342131126551	0.592045575017319	0.877880937493524
Merged-chr9-21426246-4	chr9	21425752	21426752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	1344.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	5.54453434995366	5.56785317256101	5.64519743596344	5.48219328429605	5.85745890360147	5.78427375925925	0.2558512661949	0.433456190311699	0.797815674529737
Merged-chr4-138068820-4	chr4	138068350	138069350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	69668.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	6.10369831150616	5.85245002890639	6.12411649230744	6.76598129190742	7.04620278169584	6.27358901942956	1.17144919417883	0.000260344143449223	0.00621420409871569
Merged-chr1-88238174-2	chr1	88237674	88238674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 14 of 41)	intron (NM_001281466, intron 14 of 41)	11154.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.6156616621	3.41337181984368	3.85232773043182	3.28345250795977	3.36757387228436	3.91981751620319	-0.297565968534172	0.642426917085078	0.899398873915991
Merged-chr4-56802972-1	chr4	56802472	56803472	+	579.0	f0_balb.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-641.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	5.21452783498263	5.42353680824655	5.28723511180203	5.45382803001756	5.31225273796702	5.41262118645325	0.15083950577663	0.658927589282132	0.905124111161976
Merged-chr15-89211689-3	chr15	89211186	89212186	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027805, exon 1 of 8)	5' UTR (NM_027805, exon 1 of 8)	127.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	6.9383263313378	7.21569811215029	6.81229029445401	7.21175764578499	6.97171359236069	7.08347470261496	0.124316987233204	0.633580869341922	0.896059441151508
Merged-chr10-118866679-4	chr10	118866186	118867186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2217.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.42966543571683	7.44439966310809	6.7956036157774	7.37056431205278	7.65189222625096	7.08264736497986	0.192720344885916	0.523930139242859	0.848428438699863
Merged-chr2-69897211-4	chr2	69896713	69897713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303033)	promoter-TSS (NM_001303033)	-33.0	NM_001303033	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	6.98611128842207	6.65014399456065	6.86342466179043	6.70589441588784	6.09040791659926	6.54720152952905	-0.590403950790815	0.0522112301072351	0.292040335759802
Merged-chr2-32968251-2	chr2	32967751	32968751	+	913.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	4950.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	5.18446674263225	4.8855037585904	4.74081049524476	5.08359812526511	4.96318822916647	4.54095405025646	-0.142229305206794	0.74008759683482	0.934478653051361
Merged-chr6-124745637-4	chr6	124745142	124746142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 6 of 10)	exon (NM_007881, exon 6 of 10)	-4563.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	7.2345843363133	7.31548116961929	6.61763891569906	6.80732252586126	6.97374570053798	6.58564359928764	-0.452576910663696	0.135214840686681	0.491308142526523
Merged-chr15-78927449-3	chr15	78927015	78928015	+	917.3412480000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 1 of 3)	intron (NM_008495, intron 1 of 3)	790.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	5.62995101294233	5.92985888071293	5.96482262743648	4.5925852580871	4.74465972959642	4.85340338640587	-2.28244407845845	1.48802050352433e-09	1.59761561364197e-07
Merged-chr2-36217737-3	chr2	36217213	36218213	+	828.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12713.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.66248578983904	6.41048133775553	6.91382281563377	7.14596959740345	7.03568086887895	6.90209945531339	0.568217473547189	0.0374431925889453	0.239089338419228
Merged-chr12-102382423-4	chr12	102381925	102382925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	57388.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.72402100518183	6.27389311993272	6.68498753822271	6.68683730183546	6.60446586501402	6.56265901656378	0.0763264978776661	0.786714380465246	0.948581287286895
Merged-chr4-138065643-3	chr4	138065141	138066141	+	898.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	67816.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.70104591016537	5.67744388612298	6.01821244359063	6.01727125517802	6.39483031266285	6.30292249932461	0.786536580939734	0.0116560288783392	0.112007720395986
Merged-chr18-23885929-3	chr18	23885404	23886404	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	tRNA-Ala-GCY_|tRNA|tRNA	-68784.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	7.90561294885883	7.82901968052961	7.96926119706604	7.48099158796796	7.71901060043965	7.30590170853396	-0.543487409653813	0.0223570900608021	0.17369686976638
Merged-chr1-131501775-3	chr1	131501268	131502268	+	954.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	25593.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.25980184482956	5.37616074818326	5.17216437418604	5.47439021128775	5.27800897897668	5.36618064132306	0.186408992341855	0.589543774673409	0.876892891421814
Merged-chr6-54706761-2	chr6	54706261	54707261	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	25137.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	1.81672821769379	1.79519305850943	1.83002148470858	2.03448318187381	1.83568364160284	2.11146072177339	1.56666796769618	0.117838551815036	1
Merged-chr11-115640603-3	chr11	115640106	115641106	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12311.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.64657955770953	6.2714528683166	5.87209429070362	6.36210226116082	6.45244114271732	6.15762640032904	0.0334420532595786	0.919530389000461	0.982034101943453
Merged-chr13-59906392-4	chr13	59905893	59906893	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-83246.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.03021860312582	4.00162423586432	4.05989067523482	4.3425555796019	4.16546303281115	4.17671697365396	0.572743653398776	0.225717329087059	0.620677573839554
Merged-chr6-112696282-4	chr6	112695771	112696771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167730, intron 1 of 13)	intron (NM_001167730, intron 1 of 13)	399.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	8.1184949332273	8.28323807290908	7.19933308118316	8.05110032254089	7.89626901961534	7.1879453602586	-0.264171309227241	0.651328770014154	0.902785150139012
Merged-chr1-163779584-4	chr1	163779090	163780090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010629)	promoter-TSS (NM_010629)	7.0	NM_010629	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	4.16361848716013	3.86410590483587	3.83005412172968	3.8005541220487	3.9235051243936	3.6820287193309	-0.474895325940737	0.376559331521223	0.759305679321894
Merged-chr12-104174950-4	chr12	104174444	104175444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21072.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	5.8311636798239	5.60819236386425	5.44094635327129	6.16800395990419	6.45121458457475	5.93419500682698	0.991249005255467	0.00289230932112041	0.0409500210978029
Merged-chr2-76675248-4	chr2	76674763	76675763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031256)	promoter-TSS (NM_031256)	-52.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	6.71689026437966	6.35031349420236	6.65180477582599	6.51919193388599	6.12894054822765	6.4392040420369	-0.346271455195862	0.238937339282311	0.635631523582239
Merged-chr12-103336888-4	chr12	103336413	103337413	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	19088.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	7.06584837714609	6.79668202931264	6.60544830161779	7.11241839637104	7.15640428128603	6.87763125562856	0.328528307335328	0.223943885189994	0.618697217573845
Merged-chr9-40193130-2	chr9	40192630	40193630	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	814.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	4.81153562637778	4.94336165783164	4.72481802993023	4.91552266117788	4.70421442503107	5.14531204193055	0.191161824285746	0.636480347806992	0.897160081657505
Merged-chr8-123065461-4	chr8	123064960	123065960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-48.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	7.92014801263696	7.8836932278202	7.98503246377801	7.90609752275156	7.60659209776431	7.7558548833651	-0.241827714044672	0.277813098501991	0.675045914617265
Merged-chr17-29550333-2	chr17	29549833	29550833	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	531.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	4.4560231887833	4.41469374003811	4.25731694664401	4.38360976611077	4.13586332520534	4.02765173747343	-0.506883139365896	0.281902556716019	0.679908771156903
Merged-chr17-67450301-4	chr17	67449809	67450809	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95818.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.04269223167374	5.89599227266726	5.72901598787801	6.62329949078139	6.74582939877615	6.00877672236044	1.01435479684552	0.00231621185551981	0.0345637295685245
Merged-chr12-84181952-2	chr12	84181452	84182452	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	12063.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	3.28693929930317	2.93322947348606	3.19556674781122	3.41163292576323	3.0553281801825	3.26810938484484	0.43413506463758	0.518965857885745	0.845547505442668
Merged-chr7-132305166-2	chr7	132304666	132305666	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-10498.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.82557315657304	3.64016659343534	3.68052042980599	3.69520022060837	3.62246329872384	3.58835307731787	-0.280266115394513	0.607520757375331	0.884591975671487
Merged-chr1-152807801-4	chr1	152807273	152808273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010877, exon 2 of 16)	5' UTR (NM_010877, exon 2 of 16)	7620.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.75837650011634	8.02905319159031	7.64832316784861	7.71557117866884	8.00467840838327	7.80317644146874	0.0327869731894842	0.891305493977548	0.974795270136864
Merged-chr13-47238175-1	chr13	47237675	47238675	+	561.0	f1_c57bl6.idr	intron (NM_146042, intron 5 of 7)	intron (NM_146042, intron 5 of 7)	44172.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.71915867409891	2.54794283718251	2.76958003433192	2.48201360577854	2.37667932616774	2.72329173954392	-0.874457875994885	0.279057984868254	1
Merged-chr13-100795715-4	chr13	100795205	100796205	+	840.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9219.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	4.15131241046868	3.82257151506187	4.13411209573477	4.10886166145008	3.78526051188605	4.20171160598269	-0.0174374826725543	0.973375324695129	0.994035429262205
Merged-chr2-164866954-4	chr2	164866467	164867467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	7.76313057297089	7.18417367712068	7.48649223487126	7.70207360228137	7.73269201045665	7.38307992148726	0.173818277899761	0.518709459239361	0.84542522050122
Merged-chr8-104332922-2	chr8	104332422	104333422	+	910.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7672.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	4.16073431899653	3.94239235264816	4.36851433905648	4.0780020620003	4.15155827462286	4.43438225237374	0.174852009010625	0.723470333810795	0.929080239793919
Merged-chr9-96399623-4	chr9	96399107	96400107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35176.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	6.87410470370843	6.85441551170847	6.8644687798984	6.76088173828925	7.19724707034509	6.84896801882643	0.148009672248151	0.576677409673358	0.871688505677889
Merged-chr1-167349992-4	chr1	167349510	167350510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	19.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	7.8638548882662	8.18726812275741	7.93679974094974	7.78612749512846	7.87129304586897	7.45363259893636	-0.402642271499165	0.100754738018269	0.42330130237324
Merged-chr17-56023975-2	chr17	56023475	56024475	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	12662.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	5.29784119063805	4.81600308588591	5.4749034867022	5.15834969578758	4.69595617242623	5.25460392006077	-0.3484449669494	0.418104798859205	0.788473936634102
Merged-chr11-98709282-4	chr11	98708779	98709779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	7966.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	7.97419673133253	7.90505634277857	7.7463218593919	7.79605893903298	7.92233510933068	7.44787869134436	-0.193591030110223	0.426450737961984	0.793828031417019
Merged-chr18-54916048-1	chr18	54915548	54916548	+	812.0	f0_balb.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	74132.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.55259713090729	2.62530577057361	2.76439696814541	2.86907669079829	2.79101693845559	2.83770605380137	1.00500554865025	0.173962922301006	0.553189356180945
Merged-chr1-191201414-4	chr1	191200916	191201916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18083.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	7.63585683496114	7.55031024100072	7.09138942951411	7.08984560643721	7.282746691148	6.46335947421726	-0.66852550274265	0.0371921943248293	0.237971051613196
Merged-chr13-24758564-4	chr13	24758108	24759108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 2 of 6)	MTD|LTR|ERVL-MaLR	3329.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	6.43247434922634	6.71421268568411	6.4404843541649	6.63428143986867	6.99572459505577	6.75704512704781	0.42474071404797	0.12578216909127	0.474437113587777
Merged-chr17-49432083-2	chr17	49431583	49432583	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	3719.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.44992649949056	4.35982045018363	5.14788105452876	4.39907289199926	4.15322513128752	4.46925592095065	-0.861836029827729	0.0859221019362734	0.388196028555869
Merged-chr11-32533199-4	chr11	32532690	32533690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-76.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.22694988825971	7.54045631522259	7.23292605108567	7.31836021733479	7.05178731651019	6.68534677636876	-0.438087488065392	0.120244922285498	0.463703920541859
Merged-chr8-84982823-4	chr8	84982312	84983312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4064.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.12122478113988	7.86603448884737	7.88895650469491	8.06809484950583	8.25147139092499	7.73897939264514	0.112398247082101	0.647061214794357	0.901159400806897
Merged-chr4-118437438-4	chr4	118436937	118437937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-94.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	4.13873610871547	4.24938696520022	4.40972599693939	4.69104946612076	4.41163329537882	4.7507541591882	0.90416216180914	0.0447989225454992	0.266866206942056
Merged-chr1-64909100-1	chr1	64908600	64909600	+	590.5	f0_balb.idr	intron (NM_001039493, intron 3 of 7)	MER21B|LTR|ERVL	47724.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	3.62430007062082	3.91952824695913	3.67348620916482	3.45123138687192	3.63605255026505	3.69123507839628	-0.524822158599911	0.352835237076692	0.740329823404675
Merged-chr19-45675306-3	chr19	45674808	45675808	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15115.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	4.74714748459207	4.88102849846122	4.60577900134658	5.17842334898439	5.25962146817822	4.6751957531599	0.695261858150774	0.0981449329258625	0.417592737722191
Merged-chr17-74717688-4	chr17	74717205	74718205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152817)	promoter-TSS (NM_152817)	-45.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	5.06253302933922	5.49925143195569	5.18100730995201	5.86429995585405	6.07239956087954	5.57200855501475	1.11194200424564	0.00223002489572557	0.0335665541829836
Merged-chr7-117481633-3	chr7	117481126	117482126	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100647.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	2.70342359964521	3.05575923174062	3.01969629668723	2.67450889337408	2.71151522041763	2.85772404559736	-0.953712718074668	0.201127994764803	0.590649332547106
Merged-chr18-4353005-4	chr18	4352498	4353498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-45.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	8.31635721639976	8.47542575659388	8.33929189004891	8.15834071288506	8.57348287695631	8.16553635516452	-0.081720843951634	0.725539018311399	0.929698613727862
Merged-chr2-52763218-4	chr2	52762763	52763763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-21114.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	5.13351137785155	5.14455314384394	5.11321897827026	5.3624859944084	5.51781570564019	5.40395500226085	0.605111070725966	0.0777100488658484	0.367935458406141
Merged-chr13-55099513-2	chr13	55099013	55100013	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 1 of 12)	intron (NM_001293660, intron 1 of 12)	787.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	6.21336173141464	6.2414870298942	6.0205240971865	6.22053278839164	6.02962688883259	6.01115976443559	-0.132826110603568	0.646827471455632	0.90114476203283
Merged-chr2-91070530-7	chr2	91070062	91071062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-247.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	7.52767561596277	7.11891647679636	7.31272382359784	7.32497576716482	7.27518779211963	7.10360557811715	-0.132993226844476	0.597852002388774	0.880483945172659
Merged-chr10-94356949-4	chr10	94356473	94357473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45024.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.38903235527405	8.31409271630596	7.99283700982013	8.35782421269746	8.62040863337738	8.10146800409827	0.189979196451247	0.445570934635251	0.805244479586682
Merged-chr4-45297134-4	chr4	45296628	45297628	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027266)	promoter-TSS (NM_027266)	-40.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	3.93872908100099	4.20076266623902	4.5351469359615	4.15585915615267	3.85522175838579	4.24125687208837	-0.424193642169163	0.417089758263579	0.787792972496192
Merged-chr5-101997877-2	chr5	101997377	101998377	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	B4A|SINE|B4	72044.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.18470661569904	7.11101889192119	6.42854795460277	7.03228977341122	7.042926205095	6.46864565528299	-0.118961372862851	0.719053964416853	0.927652639255676
Merged-chr15-100443704-3	chr15	100443204	100444204	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	20511.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	4.17543305495932	3.90343773585038	4.24075643420615	6.26867123425904	6.65557562974312	5.94194930625271	5.36579825663286	1.47808620872069e-22	1.68477530486618e-19
Merged-chr5-115556383-4	chr5	115555846	115556846	+	906.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133915)	TTS (NM_133915)	-3121.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.56926422678192	3.77471433110514	3.7824488772976	3.40038774753157	3.35087191437629	4.15805207093772	-0.0737779349732413	0.908947412901036	0.979380714967749
Merged-chr14-118178537-4	chr14	118178067	118179067	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	41440.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	4.87792625766816	4.7089344396011	4.97159210902496	4.91880532012284	4.98656111314123	5.34652992982275	0.512683147878779	0.194370319417042	0.581622092928155
Merged-chr11-32331233-4	chr11	32330808	32331808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16503.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	3.74341349563944	3.60109862596804	3.73721843109129	3.45007428466787	3.16399080601762	3.60393170026582	-1.04882403359278	0.0840279716991465	0.383661081936741
Merged-chr16-13668587-2	chr16	13668087	13669087	+	668.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028761)	promoter-TSS (NM_028761)	-417.0	NM_001358453	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	5.61271400103105	5.74028925811399	5.70583818021641	5.73085514899158	5.79103978207114	5.7150517392293	0.113808583142644	0.7119560643168	0.924891945289204
Merged-chr11-120548407-2	chr11	120547907	120548907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033231, intron 1 of 4)	intron (NM_001033231, intron 1 of 4)	1320.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	4.9369275539371	4.37916227449036	4.44722100425327	4.85001027078509	4.62023897444999	5.05199593381146	0.515705747399414	0.26057591791606	0.658027962349749
Merged-chr19-55801505-2	chr19	55801005	55802005	+	623.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	59695.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.44569151087517	3.60266449439228	3.68942227539429	3.48676752047502	3.26585911875113	3.44458552858256	-0.677203091610197	0.251408386171476	0.648858219496158
Merged-chr2-4448267-2	chr2	4447767	4448767	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	RLTR20C2_MM|LTR|ERVK	47291.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.25620056921505	3.22567647882548	2.90375923747629	3.4340271864552	3.24672014233649	3.29493981014181	0.74821554462502	0.271773001164148	0.669165567962878
Merged-chr1-36080594-2	chr1	36080094	36081094	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	12194.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.26592958891419	5.37088379954476	5.70374774868322	5.4525778993096	5.39280839656325	5.58637770396626	0.0499629619484466	0.885867808048342	0.973636976161493
Merged-chr9-57708953-2	chr9	57708453	57709453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 1 of 6)	CpG	384.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	7.11997949031146	7.19891891892511	7.31545606523547	7.07415914678072	7.1345570132465	7.12814170370353	-0.145345595832872	0.536397582096514	0.853950369477035
Merged-chr11-50149643-6	chr11	50149081	50150081	+	865.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 6 of 20)	intron (NM_029745, intron 6 of 20)	18221.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	4.81580470988321	4.5946599627775	4.72440995536737	4.27429525712355	4.19196609215592	4.08327404302946	-1.34682821242829	0.00278304492833096	0.0397275008400347
Merged-chr8-25968993-2	chr8	25968447	25969447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 4 of 17)	L1MC4a|LINE|L1	7797.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	6.33695552119988	6.58173006492413	5.99976515412872	6.4719342936282	6.66455769505361	6.35293639408449	0.273386363236192	0.37154199278906	0.755652770238368
Merged-chr11-95843157-4	chr11	95842667	95843667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163464)	promoter-TSS (NM_001163464)	-78.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.27510360645166	7.2152673467476	7.26037915696017	7.63795183053977	7.76006459580118	7.16923025406485	0.453112362353324	0.0814681851606619	0.377528763503281
Merged-chr2-139379384-4	chr2	139378885	139379885	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114528.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	4.23247894672041	4.21814671265918	4.07964491219111	4.63169573203001	4.50991000222197	4.64070998485461	1.05342706206927	0.0184250068683628	0.153043831734001
Merged-chr11-60878882-4	chr11	60878400	60879400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168507, exon 1 of 3)	5' UTR (NM_001168507, exon 1 of 3)	138.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	8.52186784871356	8.96449343874169	8.59946232820288	8.64703855559194	8.94972120183559	8.27695285645541	-0.0715199889079591	0.787483530106529	0.94877064431094
Merged-chr1-173626917-1	chr1	173626417	173627417	+	549.0	f1_balb.idr	Intergenic	Intergenic	-3942.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	2.63191522402263	2.36869603076642	2.28818904052012	2.62909098075585	2.44865679366992	2.63196607772054	0.760835666995376	0.373716746579341	1
Merged-chr14-51089531-4	chr14	51089011	51090011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1566.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	6.63302448815696	6.59683567926496	6.40552694866703	6.77377233593547	6.79076576109721	6.5405673899093	0.250138201398217	0.34646519018512	0.734677492075457
Merged-chr4-148085845-2	chr4	148085345	148086345	+	655.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2219.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.76901881587312	4.92262033307843	5.50433373030641	5.48562715383573	5.41031173554383	5.51287225456249	0.759653985431596	0.0567198654090916	0.307034478083259
Merged-chr2-155826082-3	chr2	155825579	155826579	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010579, intron 2 of 5)	intron (NM_010579, intron 2 of 5)	846.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	6.69071917369439	6.80712425084828	6.73802102975233	7.07275831008603	7.00405034176326	7.00044489662328	0.430566203245947	0.0766162863299932	0.364665825016936
Merged-chr2-32571267-2	chr2	32570767	32571767	+	949.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010073, exon 2 of 4)	exon (NM_010073, exon 2 of 4)	409.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	7.08894143846185	7.22864866828496	6.82297999863469	7.1716425715951	7.11866652512737	6.97092917835008	0.0394838630288337	0.877312063486479	0.971560353131186
Merged-chr5-77246349-4	chr5	77245862	77246862	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19132.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	5.26484364846718	4.90771598474562	4.89370614398018	5.24256654030922	5.50149802675541	5.14634424844928	0.561206303373442	0.144063463333445	0.50668833616744
Merged-chr18-73571654-2	chr18	73571154	73572154	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1051.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	7.55383078670963	7.78715562529458	7.62288308169172	7.43900267784578	7.66098718699978	7.58536668485891	-0.13604229659161	0.554324247346077	0.862763733809177
Merged-chr8-91343034-3	chr8	91342534	91343534	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	29509.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	3.80684075810485	3.87826245294692	3.89873406018306	4.28851007165142	4.53369823706508	4.35174493084149	1.55420994838541	0.00135332005602393	0.0228385386833258
Merged-chr13-101752650-2	chr13	101752150	101753150	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	15567.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.0550322843659	3.88213392245687	4.27257883206219	4.16660894698258	4.26953718159058	4.38122178525476	0.568355438355193	0.240521799838688	0.63757036720849
Merged-chr11-79260184-2	chr11	79259684	79260684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5489.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.96979475222605	3.8099561581	3.56861888751429	3.26472787429205	3.77077987988609	3.64069153867212	-0.720203832602834	0.247542624112243	0.644481756199053
Merged-chr1-37356743-2	chr1	37356243	37357243	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-12474.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	5.38576996191885	5.13848848934798	4.80372971177808	5.29631826582619	4.80480097161304	5.02750234930995	-0.177843603575977	0.668252552810492	0.909033703749898
Merged-chr11-19966353-2	chr11	19965853	19966853	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41911.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	3.00095250021065	3.04426218621083	3.28494666371389	3.06445749161496	2.80696546407378	3.35530402063944	-0.0995452213705205	0.888421882067491	0.974027379446232
Merged-chr13-100852079-2	chr13	100851579	100852579	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18652.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	2.75126726766749	2.54884176108783	2.48282649444892	2.89392717777849	2.8455907301328	2.82334244775834	1.35208743781696	0.0862528126150751	1
Merged-chr5-9088138-2	chr5	9087638	9088638	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12599.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	4.7108975826877	4.59867037067014	4.92973638315319	5.0410938384027	4.97383002519613	5.12820271038961	0.671126670025344	0.0848052011188826	0.385662741143356
Merged-chr14-22801542-4	chr14	22801045	22802045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-258747.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	5.96238740326044	6.39191000629296	5.85260323752624	5.42906134532816	5.40313577636752	5.53258688272129	-1.17593089155021	0.00045583215157127	0.00977296616025309
Merged-chr11-94677464-4	chr11	94676957	94677957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	36.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	6.08744027781337	5.70748653011646	5.87110282786591	6.22607416863408	5.60752183677196	5.60968457124854	-0.0823133638758902	0.818156596066221	0.956879247248269
Merged-chr5-139389878-4	chr5	139389398	139390398	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-6.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.70900648668043	5.81216669240039	5.87591811717822	5.53185759107768	5.56987596169555	5.51872914047845	-0.468914638647004	0.134835584858292	0.490808843120381
Merged-chr5-113810243-4	chr5	113809753	113810753	+	950.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-9901.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	2.73303516854848	2.54658345049051	2.96484159055375	2.98989953380797	2.67435603119737	3.09363883656246	0.855271939173026	0.269861438285925	0.666905044122659
Merged-chr13-92680239-4	chr13	92679740	92680740	+	845.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	69102.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	3.52321746490716	3.80873592692835	3.77176176273823	3.62035623144603	3.80981206441304	3.8408833850893	0.178289102173454	0.745454264623833	0.936177103310491
Merged-chr10-8795552-4	chr10	8795043	8796043	+	954.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	90527.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.70918021124749	4.06903114079808	3.99809436297097	3.86278579440739	3.83144249325383	4.3651588012131	0.295182245974209	0.590280890167369	0.877135729499364
Merged-chr3-69114310-2	chr3	69113810	69114810	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	12782.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	4.65894010149355	4.85298637445858	4.99915849861518	5.27040094133605	5.37881859331761	4.57271883708204	0.625858845235782	0.157635515123387	0.52908202861787
Merged-chr1-92908397-2	chr1	92907897	92908897	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_138577)	TTS (NR_138577)	1408.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	2.30675754589604	2.24110409300359	2.61888579110083	2.49098656723623	2.54980937355286	2.75163566080357	1.25669742707224	0.141892495421197	1
Merged-chr17-33947542-4	chr17	33947056	33948056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020603, intron 10 of 14)	intron (NM_020603, intron 10 of 14)	3932.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	4.91981680799184	5.10434708541926	5.35513246226001	5.30174589512349	5.02402255537362	5.4732824037601	0.28562688040896	0.458430436591321	0.812981239724864
Merged-chr1-154274909-3	chr1	154274414	154275414	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-18008.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	2.7658970218579	2.55674822543758	2.79329623551316	2.56043693845711	2.54470627452055	2.98024371241574	-0.0116127320490098	0.988243257146791	0.99731652667245
Merged-chr19-46498978-2	chr19	46498478	46499478	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.16426561084482	3.11302663316629	3.33108001620879	3.36263399302674	3.12865449719973	3.23416362835919	0.177462290192976	0.779372151384957	0.945716196316141
Merged-chr17-31081187-3	chr17	31080678	31081678	+	969.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	23484.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.50464337711299	5.22067417240591	5.63617397468625	5.68312327945955	5.66360807213017	5.13818247084237	0.13823215232406	0.710720011662912	0.924443743734623
Merged-chr13-55190388-4	chr13	55189908	55190908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19374.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	6.87272663124098	6.92268852527094	6.61865232288097	7.00868178523263	7.10338084182429	6.74575718277877	0.231806093141787	0.38221260159534	0.763819347060188
Merged-chr6-125009691-4	chr6	125009229	125010229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	60.0	NM_175557	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	8.50327796803204	7.67583908623388	8.02773034634253	8.35243343241792	7.9397940360265	8.22012692823691	0.0868164268398176	0.763909152727339	0.941838906550437
Merged-chr1-64956746-4	chr1	64956219	64957219	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039493, exon 1 of 8)	5' UTR (NM_001039493, exon 1 of 8)	105.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	5.15057625945314	5.21271422743045	5.02798911245483	5.02867454477781	5.32277978016178	5.02037710996317	0.0112230420889176	0.975892345747398	0.994572735300192
Merged-chr12-33301854-3	chr12	33301367	33302367	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-648.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.36319361498838	6.18294891846472	6.35477739022634	6.58213152329451	6.65557107382226	6.04537541136286	0.275827970474451	0.368199855696118	0.753218773024281
Merged-chr3-59261831-2	chr3	59261331	59262331	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	1154.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	6.65394219356376	7.12967739074293	6.69603388449233	6.92058750026038	7.22286267711662	6.54206836484844	0.131749456193679	0.672081616208077	0.910719060610024
Merged-chr19-40994243-4	chr19	40993738	40994738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008528, exon 1 of 17)	5' UTR (NM_008528, exon 1 of 17)	297.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	6.65235943214415	7.23504789384322	6.61076094339044	6.52595180462064	6.81415124841218	5.7736521553428	-0.672252901377871	0.272807616315855	0.669951714189667
Merged-chr16-33691509-4	chr16	33691003	33692003	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	7037.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	5.2803248359216	4.76106479725338	4.77903314599018	5.13596103302585	5.04242235751651	5.20704055106019	0.322820426390848	0.42519043333024	0.792988748085012
Merged-chr4-155624810-4	chr4	155624335	155625335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040441)	promoter-TSS (NR_040441)	-19.0	NM_001347308	12537.0	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	8.38077757254298	8.6425569016308	8.22834072225717	8.24260704969378	8.54996045218287	8.08213508843805	-0.166937115989924	0.49753897268753	0.833737243769691
Merged-chr11-29514538-4	chr11	29514060	29515060	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163454, intron 1 of 2)	B3A|SINE|B2	473.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	6.93910581458565	7.19256062188163	7.02640039378757	7.05697084196207	7.2235512473162	6.8083278376525	-0.0112609750240437	0.965580906728525	0.991995030766812
Merged-chr7-67234981-4	chr7	67234480	67235480	+	706.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291191, exon 11 of 11)	exon (NM_001291191, exon 11 of 11)	12364.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.37185860568461	3.2572835467091	3.49178085267541	3.47932054681347	3.29568721709739	3.66333795019321	0.407873944497046	0.500642848545744	0.835182151490911
Merged-chr5-64268008-3	chr5	64267508	64268508	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37651.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.33411762470622	4.39555436486688	4.58476899907231	4.5038214876357	4.57163507000466	4.72639952698339	0.409185136348541	0.340015650615942	0.72967866276074
Merged-chr2-159731553-2	chr2	159731059	159732059	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep38|DNA|hAT	-215782.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	2.85350540969467	2.77333973048343	2.92220092502902	2.83177110002026	2.52719219406598	3.21619923094164	0.182054956132091	0.817978568426425	0.956835450074313
Merged-chr7-63898013-2	chr7	63897513	63898513	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-18844.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.55176348478913	4.67522185141963	4.68430179371089	4.80532710322028	4.31613678311168	5.02992384666832	0.239141767995762	0.600224425234193	0.881521356518052
Merged-chr9-45295395-2	chr9	45294895	45295895	+	819.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-23705.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	6.05945001046709	6.15755773244701	5.7745869311229	5.76807019900619	5.98132417963523	5.72820240702677	-0.31146858982528	0.323411630391687	0.71668986599242
Merged-chr1-165718532-4	chr1	165718014	165719014	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10420.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.04695596911791	7.4018932363689	7.45838960283406	6.97892570896	7.35716981201152	7.45609781247926	-0.0492844482252745	0.855892030715331	0.966291297241215
Merged-chr17-21516480-4	chr17	21515967	21516967	+	878.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19072.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	6.18468012067034	6.30546527811466	6.33364882682385	6.21713274277385	6.18814665098787	6.39306728258174	-0.0190260213509126	0.945409646356343	0.987907378883357
Merged-chr13-94702811-4	chr13	94702417	94703417	+	942.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-86026.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	4.34620155814566	4.43442206695984	4.21494619811261	4.44146110073001	4.08308450218494	4.18811663293882	-0.257308126912143	0.584118677123124	0.874491208659042
Merged-chr10-78068680-2	chr10	78068180	78069180	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-688.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	3.72827410728376	3.53863229279724	3.62228276144829	3.64020850537447	3.36556701862275	3.69244268872816	-0.233464467059473	0.684653206897323	0.915930759709583
Merged-chr1-184606083-4	chr1	184605586	184606586	+	882.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48395.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.05000318979109	4.01006208464763	4.02398047589091	3.84390927886376	3.63731927972387	4.09205131904693	-0.52099694872609	0.320307876889459	0.714152674711097
Merged-chr10-15297477-4	chr10	15296961	15297961	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-494316.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	3.55532313482318	3.72926641003034	3.51598791300646	3.43703094599285	3.34728054537621	3.58640358685438	-0.571310202342667	0.325323075434805	0.718104679754736
Merged-chr14-70395272-4	chr14	70394754	70395754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 15 of 22)	intron (NM_021308, intron 15 of 22)	33840.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	6.61890047745421	6.44212473550382	6.5914827422802	6.33591135983521	6.26924108313004	6.58463103198948	-0.255614644626324	0.352134803841993	0.739835187306448
Merged-chr17-67260188-4	chr17	67259687	67260687	+	955.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	94272.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.60927198185383	5.43353871660101	5.51772863290783	6.67600907085925	7.02209114921794	6.66513618674391	2.17234274529723	5.01280502639072e-13	1.01733044057541e-10
Merged-chr4-126103295-4	chr4	126102798	126103798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-659.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	8.04850402418409	8.43657312451648	8.12099943361042	7.82642074685567	8.24611392182532	7.83365906641726	-0.317051340768779	0.209232013557122	0.600606388521095
Merged-chr2-160070575-4	chr2	160070081	160071081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53928.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.52179095226128	6.63277752393431	6.04484760075296	6.06144842194583	6.185681934735	5.93257982367056	-0.607169371365565	0.0524437402576267	0.29282906585402
Merged-chr8-71293318-2	chr8	71292804	71293804	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	B4|SINE|B4	20590.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.53601615036917	6.72923675336083	6.76999495793587	6.50171814833617	6.47675532359761	6.03138423546547	-0.501436177402895	0.0853165128351307	0.386568778687067
Merged-chr9-66882047-4	chr9	66881559	66882559	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37646.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.46050123684498	7.67099461081268	7.24280086481542	7.20594629920287	7.30051390933857	7.33505902537962	-0.291929303555503	0.234163304755528	0.63036877369004
Merged-chr2-62640047-3	chr2	62639529	62640529	+	677.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	6226.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	4.62455086807414	4.34776209927422	4.49263280703191	4.60245787107316	4.35020482868383	4.60034794188506	0.0556807653123251	0.899034539748326	0.976456276294408
Merged-chr11-118165450-2	chr11	118164950	118165950	+	980.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112699, exon 13 of 13)	3' UTR (NM_001112699, exon 13 of 13)	-36231.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.2988818509168	3.33447299241908	3.97580855035495	3.38318702630208	3.28972990754545	3.48003988615523	-0.665601664004205	0.30554345072516	0.7016520242849
Merged-chr5-140379399-4	chr5	140378901	140379901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	9907.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	6.07626946584804	5.96659571256261	6.27296394559818	5.97244586318333	5.97906573614263	6.2561854004109	-0.0614729818307449	0.837748376638293	0.96222208690411
Merged-chr2-130667736-4	chr2	130667241	130668241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025922)	promoter-TSS (NM_025922)	-100.0	NM_025922	16434.0	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|ITPase|Itp|NTPase	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	5.16134594742221	5.32618292735645	5.61587758969569	5.48413221464194	5.16362496849813	5.27954881749851	-0.112924330169187	0.757658074203888	0.939883186830738
Merged-chr4-107167918-1	chr4	107167418	107168418	+	566.0	f0_balb.idr	intron (NM_025617, intron 2 of 4)	intron (NM_025617, intron 2 of 4)	10448.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	2.86220161172109	2.94969705301322	3.33868156623765	2.98119337306615	2.97142763968651	3.14707136273283	-0.123081323382822	0.860848264475931	0.9676427717189
Merged-chr2-30048849-4	chr2	30048354	30049354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008498)	promoter-TSS (NM_001008498)	25.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	7.31312335612283	7.54898805418239	7.2579715553932	7.28575176293964	7.61024884590024	7.05879157332475	-0.0494725989690395	0.853346110805965	0.965672676480491
Merged-chr11-100939556-4	chr11	100939063	100940063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011486)	promoter-TSS (NM_011486)	-23.0	NM_011486	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	8.60923267518412	8.89964342685294	8.25765152547256	8.43415757591878	8.9155273663907	8.49522777890054	0.0230794724644374	0.931139118664689	0.984775837432654
Merged-chr7-25282431-3	chr7	25281938	25282938	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027882, exon 1 of 20)	5' UTR (NM_027882, exon 1 of 20)	259.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	7.13129829951029	6.6688449941066	7.12851819714391	7.37139993347481	6.78693432900541	6.99340117109509	0.1256628301321	0.673296607449423	0.911343392668141
Merged-chr1-191395775-2	chr1	191395275	191396275	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	1266.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	6.80752566668083	7.11254248558652	6.90689669725139	7.05000899651072	7.34256988191149	7.32676663793996	0.44583874986393	0.081930166229332	0.378679448943503
Merged-chr18-60714885-4	chr18	60714369	60715369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	12697.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.6590880521288	5.3589571288134	5.51062380541109	5.11155948148245	5.29778377574708	5.67818179504209	-0.274668526261176	0.452815276295581	0.809457484278845
Merged-chr15-87116921-3	chr15	87116424	87117424	+	625.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427375.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	3.10262475990349	3.023100949905	3.44163047543226	3.16870810260969	3.22608000415916	3.40827566949358	0.306701249787054	0.639466704860678	0.898128849808374
Merged-chr8-84894634-2	chr8	84894168	84895168	+	676.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	-747.0	NM_008097	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	3.00103297345517	3.01833876516983	3.08902514523913	3.25734868045229	3.15675494351732	3.27602494250313	0.851073866990903	0.18539838927527	0.569470877644115
Merged-chr19-10880919-3	chr19	10880415	10881415	+	725.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	828.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	5.33857929614917	5.20132973056113	5.23901272911637	5.20377327691419	5.18083879366821	5.06513693170667	-0.216623474301944	0.538017211283788	0.854944075396138
Merged-chr10-16995185-3	chr10	16994677	16995677	+	806.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	100605.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.71123094230924	3.9440915627237	4.04188650877874	4.00086197523304	4.04974604818231	4.06346863700368	0.41473588411821	0.412368961836756	0.784461927725322
Merged-chr19-41332402-4	chr19	41331870	41332870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	52700.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.98369664296809	8.02130326518109	7.65773012680007	8.10424644730999	8.23265293347014	8.00263690317264	0.305259831197869	0.186011571635258	0.570478450946392
Merged-chr9-99499582-4	chr9	99499085	99500085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 15 of 21)	intron (NM_028768, intron 15 of 21)	29164.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	7.1622255371052	7.06885911847905	6.84827665267776	7.26423623938316	7.2661099165607	6.95174372124927	0.20529325510943	0.423049075100638	0.791814651217475
Merged-chr14-19713243-4	chr14	19712731	19713731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-38026.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.17930968288179	6.55363180769022	6.59699913338839	6.20573777427589	6.3261239413278	6.38052351779765	-0.242733432763219	0.402427539139132	0.778019718782707
Merged-chr10-118820068-4	chr10	118819575	118820575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48828.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.57665536578912	5.4027336719819	5.36405553488529	5.29136033907464	5.36500404431086	5.26783741741643	-0.279496615983963	0.409728064147929	0.783037110673669
Merged-chr5-114774711-4	chr5	114774215	114775215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026718)	promoter-TSS (NM_026718)	268.0	NR_027872	67642.0	Mm.482535	NM_175120	ENSMUSG00000092183	4930515G01Rik	-	RIKEN cDNA 4930515G01 gene	ncRNA	8.03713471282574	7.78358238381552	7.86676330548502	7.99990795857788	7.78285993022018	7.59335850875715	-0.134350504397798	0.570829607668263	0.869266484779943
Merged-chr5-31054774-4	chr5	31054184	31055184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-96.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	5.58271113468264	5.59296927222709	5.77612916403964	5.65800535925692	5.83164571827679	5.78781106206362	0.214881279755714	0.493390274730455	0.831238089043545
Merged-chr13-97205374-6	chr13	97204906	97205906	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7049.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	5.72271843235427	5.7760486347555	5.97180873669202	5.915319672072	6.09008196462236	6.03255333949485	0.348452326497885	0.246792206669795	0.643914770078714
Merged-chr1-193905936-3	chr1	193905428	193906428	+	938.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	316831.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	3.79002885863979	3.71810174495562	3.8641363882547	3.76456308682149	3.52222288874907	3.6801035876412	-0.449202821127829	0.407772085133198	0.781873423959653
Merged-chr12-86891206-2	chr12	86890706	86891706	+	618.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6392.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.38485466787623	4.36784420826639	4.45643720211438	5.14189875757187	4.88224122937289	4.69766986782743	1.24491557208201	0.00312503892783335	0.0434539169630945
Merged-chr11-114995024-3	chr11	114994532	114995532	+	826.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	-5146.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	5.6776499701987	5.24926934550374	5.97837121178734	5.28232692070076	5.17633461279362	5.33931552168364	-0.761061043014935	0.044174510883272	0.264513003855447
Merged-chr4-109676586-4	chr4	109676095	109677095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007983)	promoter-TSS (NM_007983)	-32.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	8.06420272107063	8.27647061942997	7.69368199592313	8.13548079428211	8.24373851975734	7.90029662125805	0.090324665396378	0.723075262442671	0.928989158354973
Merged-chr16-87625531-4	chr16	87625030	87626030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72200.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	7.42900937567348	6.99193020583299	7.144549622654	7.15495530201816	7.17682165241896	7.26189230531361	-0.0114261482702254	0.9641654060914	0.991353521860134
Merged-chr8-46930640-2	chr8	46930140	46931140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56247.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.14830584126832	6.09438864142393	6.25458874263576	5.92889770702334	6.21111198479267	6.15209894178586	-0.0960557593335906	0.740864092208693	0.934712654423072
Merged-chr7-45528535-2	chr7	45528036	45529036	+	962.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	intron (NM_148927, intron 1 of 19)	2206.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	3.18375831395898	2.95461725845633	3.02385775953387	3.25400567251769	3.0849634306689	3.27254329751989	0.621377251372469	0.345501843953263	0.733882070166902
Merged-chr14-120403751-2	chr14	120403251	120404251	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360378, intron 7 of 8)	intron (NM_001360378, intron 7 of 8)	-74710.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	3.66662119628803	3.67550216006648	3.55368884061875	3.73349519517683	3.67744020935958	4.06905522920468	0.633685442409058	0.253753120203435	0.651117231535132
Merged-chr15-97908305-4	chr15	97907750	97908750	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009504)	promoter-TSS (NM_009504)	46.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	3.38887290212634	2.96604904691902	3.54167874351817	3.30133294117284	3.15035403478539	3.40502228338926	-0.122442769885218	0.855957417129403	0.966330645926821
Merged-chr10-76345375-4	chr10	76344880	76345880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-89.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	5.46227856324021	5.82614315144859	5.71990053707164	5.8797636654419	5.76716479404617	5.18943053361208	-0.0372888559606325	0.919873482199763	0.982120898917633
Merged-chr8-69090335-3	chr8	69089841	69090841	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-1119.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	6.57691133017042	6.86932053814169	6.24082000446595	7.16331372116493	7.43470519861459	6.8307457684298	0.882638693296667	0.00468950914888586	0.0585717017803205
Merged-chr5-114854884-1	chr5	114854384	114855384	+	545.0	f1_balb.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1170.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	5.15244238993741	4.84517264597969	4.72258099671708	5.18429539858395	4.93571970840287	4.79044693942792	0.121833405836389	0.765216281621112	0.942137701159565
Merged-chr2-60818749-2	chr2	60818249	60819249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	62689.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.7094526001279	5.94129382337205	6.09834476966672	5.94380170971702	5.93301713786681	5.8642032128788	-0.0016696923511343	0.995670194671852	0.998961028701257
Merged-chr3-7502907-4	chr3	7502405	7503405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	-521.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	5.52516629283897	5.32620439704703	5.50004372730884	5.10179255280316	5.50645712620081	5.22567309095888	-0.292404448424893	0.415497545091667	0.786473510786138
Merged-chr8-123478576-4	chr8	123478110	123479110	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028260, intron 1 of 15)	RMER15|LTR|ERVL	748.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	7.90464427874771	8.09267865512411	7.7558371779975	7.99687986448705	8.21123198703315	7.6539251821707	0.0761959697430829	0.764060173623059	0.941935238563264
Merged-chr8-121951153-4	chr8	121950706	121951706	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	CpG	714.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	6.6363837563699	6.57982554495119	6.49079310772243	6.85940496502491	6.28933459639449	6.49576622118293	-0.00691105692081614	0.981217601921488	0.995687678606673
Merged-chr15-100620840-2	chr15	100620340	100621340	+	687.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011873)	TTS (NM_011873)	5178.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	4.09175758226681	4.11498492826012	4.4098656621628	4.03987900584233	3.71712364303495	4.09332916877408	-0.743264417320898	0.148358573418323	0.513915084072171
Merged-chr2-116955114-4	chr2	116954607	116955607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54955.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.44980911821568	4.16543930089484	4.6598504340114	4.24577712399363	4.16154848846453	4.09109599274149	-0.699253986224614	0.145197240141435	0.508278212537777
Merged-chr7-125444882-4	chr7	125444367	125445367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029842, intron 1 of 7)	CpG	247.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	6.91834948651236	7.15722909653687	7.4313532207778	7.1491918757516	7.1678366911947	7.23230556642285	0.00622668646157583	0.980791392240446	0.995604369471063
Merged-chr13-101700223-2	chr13	101699723	101700723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-7593.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.60295430198118	3.18192066035159	3.74508336997488	3.45345126606245	3.45282663804918	3.90560618454089	0.306498924753657	0.632468750647698	0.895540879841635
Merged-chr12-73680408-4	chr12	73679915	73680915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	95619.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.56470180208601	6.68981832534011	6.19656734282165	6.57306117670852	6.52740960773815	6.27934179786037	-0.0637416607622989	0.827835177553885	0.959553526508006
Merged-chr9-124146509-4	chr9	124146003	124147003	+	957.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	24960.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	4.59552193627665	4.73500883724547	4.77703491421154	4.42882667574411	4.81748392204108	4.52205149110217	-0.210790351121178	0.623548837598335	0.891454389482559
Merged-chr4-135942370-4	chr4	135941884	135942884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4064.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	7.62457115453904	7.37992493799444	6.97271565273023	7.32274771929302	7.45950723129221	6.86167739500122	-0.16696496089031	0.577721165888394	0.87219514592351
Merged-chr2-138257064-2	chr2	138256564	138257564	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	CpG	480.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	5.19861098822004	5.08940834157636	5.2927394857968	4.8797500558954	5.03320797910858	5.32587598094297	-0.224756434293132	0.549494902445089	0.860332521265425
Merged-chr11-67589065-4	chr11	67588548	67589548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 1 of 13)	intron (NM_001109657, intron 1 of 13)	2548.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.33920632881523	4.19429261850345	3.89150508619096	4.53574596673348	4.40180471529802	4.27563687606668	0.653069462234915	0.181370639657026	0.563683120478908
Merged-chr9-65566726-2	chr9	65566226	65567226	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	Lx8|LINE|L1	13361.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.39561305243068	5.26983267287038	5.36271431405288	5.41940375296733	5.47562634902643	5.67607431171112	0.34631065946075	0.30215003758997	0.69891305259052
Merged-chr17-87973287-2	chr17	87972787	87973787	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1763.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	3.44610816109682	3.38601087466894	3.67980600513229	3.63349031110078	3.17508541572053	3.88992537674939	0.309824698363386	0.630379704563616	0.894709964383782
Merged-chr10-57725766-4	chr10	57725336	57726336	+	693.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-59087.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.01296075684147	3.84295351947438	4.08319368687062	4.13462970133384	3.84557831911597	4.23961969691353	0.282167715863379	0.580115124907469	0.87276422265422
Merged-chr7-99833268-3	chr7	99832778	99833778	+	720.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4861.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	3.21609794088786	3.43642297268719	3.09286975320505	3.3759424269857	3.33458824479468	3.28886231695695	0.281600948370531	0.657725161883531	0.904859102731141
Merged-chr1-125457169-2	chr1	125456669	125457669	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-21442.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	2.44955031468096	2.20351371955408	2.33351621473078	2.45140622015102	2.30141979116944	2.59967201737558	0.751131916298783	0.378279368723239	1
Merged-chr17-74414858-3	chr17	74414370	74415370	+	800.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 10 of 13)	intron (NM_001252478, intron 10 of 13)	19262.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	3.69062061098664	3.22350347006506	3.89488556115655	3.69559237223308	3.19758585430091	3.72761161519083	-0.235356454770421	0.724724726601831	0.929459725191008
Merged-chr5-97345933-4	chr5	97345426	97346426	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46404.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	3.97821155381628	3.83520686935998	4.03934465574346	3.74008726564783	3.84817088553025	3.9671724178275	-0.304579635050003	0.552802041508373	0.861940911171568
Merged-chr7-35092662-1	chr7	35092162	35093162	+	563.5	f0_balb.idr	Intergenic	PB1D10|SINE|Alu	-26631.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	2.72173056467212	2.87958205900346	2.72635689412874	2.76464130277961	2.60422680197492	2.92111850422166	-0.0859282455155346	0.908019216632883	0.979100266360983
Merged-chr6-98513477-4	chr6	98512976	98513976	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170722.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	4.88011905660565	4.73246526078355	4.37088823551899	4.56299298221864	4.53642730696291	4.92478920844451	-0.0263508278654379	0.953067678456846	0.989359300570295
Merged-chr4-119966909-4	chr4	119966408	119967408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	152230.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	8.28100374246083	8.13585421485416	7.91772293386153	7.60698667083584	7.77730500711249	7.58566918946952	-0.658269221901992	0.0042995515935478	0.0549296927676839
Merged-chr7-79274301-2	chr7	79273801	79274801	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018811, intron 1 of 10)	intron (NM_018811, intron 1 of 10)	1035.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	2.23477614820961	2.13318958878558	2.14727449270986	2.38280463894536	2.22286424137381	2.42205534974365	1.16971203136823	0.181915589584223	1
Merged-chr11-103114634-3	chr11	103114130	103115130	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1695.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	6.13663709305846	6.60748582833425	6.46954110918096	6.16910643778113	6.10747167555238	5.81550587839711	-0.620136238662501	0.0466905571893132	0.273397853419545
Merged-chr6-22354267-2	chr6	22353767	22354767	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	1814.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	2.71435032346241	2.57879678216603	2.58410096965773	2.69003137322561	2.71793318445934	2.78395400545948	0.549189376966563	0.461927771686196	1
Merged-chr1-63119903-4	chr1	63119412	63120412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	intron (NR_045914, intron 1 of 3)	5172.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	6.41770353275169	6.31079085590113	6.02158840448096	6.21358784275915	6.42821518672017	5.98510658864348	-0.058958242992008	0.847982504533336	0.964318271116593
Merged-chr10-127063453-4	chr10	127062955	127063955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-80.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	7.28572613342716	7.40743164828295	6.68330406705858	6.96852341410403	6.6034456380547	6.03154538891248	-0.873019273822353	0.0151325760543691	0.133469513285133
Merged-chr5-148553527-2	chr5	148553048	148554048	+	912.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	-760.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.76377996797997	4.5162476901227	4.6259256145165	5.01699771003096	5.06053463931993	5.13384703201096	0.960395182567704	0.0142256675306992	0.128091044680708
Merged-chr11-54711106-3	chr11	54710598	54711598	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76605.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	2.79275494203682	2.62657224650156	2.56878990372681	2.63047392935872	2.52015572320565	2.82981264392257	-0.0432924667767439	0.95546421650494	1
Merged-chr16-24653264-4	chr16	24652777	24653777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-68578.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.24102383401754	5.16229391763468	4.85059725960142	4.65890841446232	4.97983848479161	4.42956656494435	-0.822313705634894	0.0602944930288743	0.317832383651985
Merged-chr12-21368585-4	chr12	21368177	21369177	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	4955.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	6.47620399989042	6.38828275338183	6.6790678207548	7.9688037229975	8.23306917661598	7.6940556602169	2.21172302070949	3.20026835664594e-17	1.34488853242321e-14
Merged-chr11-98960521-4	chr11	98959984	98960984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	13.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	8.04930200260691	7.90074765981879	8.10705375923849	8.30643521236038	8.25262530036084	8.149399805515	0.311884683418128	0.14072701858422	0.501224799347477
Merged-chr9-124144497-2	chr9	124143997	124144997	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	22954.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	6.49016952014183	6.43252634352566	6.28200896626832	6.59175420830042	6.81313675428526	6.51682030314016	0.392815426310055	0.149124051476214	0.515359640953309
Merged-chr3-65941241-4	chr3	65940734	65941734	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	17015.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.00158085314643	4.10334422078973	3.84737044256301	4.03537182213422	3.93132285747196	3.91805972084781	-0.0976267351488528	0.845839432559374	0.963945177091542
Merged-chr6-85451974-4	chr6	85451473	85452473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-3.0	NR_028081	73327.0	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	7.71250699686918	8.02926692211367	7.55931630790379	7.66402486124768	7.76429871500589	7.6547349461934	-0.133234509487693	0.581780546611362	0.873449500407396
Merged-chr15-73134759-3	chr15	73134252	73135252	+	563.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	MTD|LTR|ERVL-MaLR	44340.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	3.64737971343894	4.18075045723797	4.12753589690235	3.85985633720312	4.09125258859472	4.62704106097891	0.614668463816015	0.287400360410171	0.684655137401853
Merged-chr10-118894034-4	chr10	118893550	118894550	+	938.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.86748252226203	4.81453700616913	4.93642807760533	4.97052685797013	4.69236615462449	4.81755178940597	-0.0946309464554927	0.808897794525485	0.954721853010197
Merged-chr6-145866739-4	chr6	145866232	145867232	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1312.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	7.47641512580911	7.68656822547194	7.0096343210209	5.74714766318996	5.67395819295331	5.39439537544213	-2.93464049381139	7.11706223393388e-19	4.02854771674266e-16
Merged-chr11-31803628-3	chr11	31803111	31804111	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20936.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.473464348634	3.47016277070992	3.31939867609286	3.07239856326186	3.16914141872784	3.15576510371992	-1.21655803163391	0.0550580550255216	0.301512305067531
Merged-chr10-94552327-4	chr10	94551822	94552822	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	1402.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.00612550472299	5.78645224056259	5.83174748543499	5.75048152877559	5.95775121835752	5.89323149416571	-0.0139293294990761	0.963673108056625	0.991121100730027
Merged-chr15-64256746-3	chr15	64256247	64257247	+	801.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	55926.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.14041992289948	5.15329897283989	4.98894175602002	5.64533669215354	5.40105076137398	5.64845851194593	0.908130663139252	0.00970483461967033	0.0984050830291209
Merged-chr13-113611066-2	chr13	113610572	113611572	+	905.0	f0_balb.idr|f0_c57.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7492.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.69158116642737	4.48681644443648	4.96998205389904	4.7097801639847	4.57561819490199	4.67550474506021	-0.158779844380751	0.708897769528486	0.923793004962159
Merged-chr13-74390137-2	chr13	74389637	74390637	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13571.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	4.56188357189385	4.24812051614652	4.48483915293404	4.22445377319733	4.20238766683548	4.46954073442531	-0.36818520250892	0.422368157083297	0.791187261128029
Merged-chr10-121509577-2	chr10	121509080	121510080	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33330.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.46114660748923	4.26668674002513	4.29889352832826	3.93924666924582	3.72374967073907	3.8309237024729	-1.53396049559225	0.00221356315657143	0.0333610148762897
Merged-chr7-102019510-4	chr7	102019037	102020037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1382.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	7.61223937509151	7.77779726053908	7.74053279688979	7.34897170999132	7.72593901672218	7.693185625723	-0.159010034594507	0.505174793382198	0.838038626207776
Merged-chr10-40477075-4	chr10	40476576	40477576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 10 of 11)	intron (NM_198164, intron 10 of 11)	-93286.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	4.99253941908813	5.1463607662593	5.05587392396159	4.85887315488789	4.97651434071534	4.94356253403514	-0.299946491356345	0.419569442439451	0.789101346301465
Merged-chr8-34765945-3	chr8	34765448	34766448	+	757.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-41662.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.34667870153016	2.35016771136898	2.23366910684439	2.65120226505445	2.4485670280233	2.57375554953434	1.58808919542065	0.06440895354996	1
Merged-chr18-4790510-4	chr18	4790036	4791036	+	834.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-21950.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	2.84541360061126	2.98617152405242	3.18881056658071	3.13806967033877	2.72640547224305	2.97336095261855	-0.25474664252136	0.725243917301391	0.929602807794907
Merged-chr11-78301512-4	chr11	78301007	78302007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017407)	promoter-TSS (NM_017407)	-84.0	NM_017407	54141.0	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	3.6346125903846	3.80131603346912	3.60657901449708	3.79550284356191	3.74871960378929	3.7315373013437	0.235351448129335	0.661881604837618	0.906495637422278
Merged-chr2-160732126-1	chr2	160731626	160732626	+	607.0	f0_c57.idr	intron (NM_021280, intron 2 of 33)	CpG-8784	816.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	4.47205363765798	3.92526105230465	4.24232593498644	4.4482156792498	3.63821909463336	4.02435211564676	-0.412352078963291	0.478210604313099	0.823624523176113
Merged-chr15-74989479-4	chr15	74988991	74989991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6061.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	7.16062748098894	7.2794800591687	6.81567243694603	8.09673332758844	8.42439623468067	7.48186147652199	1.38990813401316	8.04437602273113e-06	0.00033136457430664
Merged-chr4-132621847-3	chr4	132621281	132622281	+	729.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-17265.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.04400574142371	3.27962563233478	3.3650903742299	3.18675143983219	2.91536654288629	3.38274669568731	-0.268708222837697	0.692985211063718	0.918812458246728
Merged-chr1-155417025-3	chr1	155416524	155417524	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	CpG	420.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	7.14119985785043	6.98242821617302	6.70589883491073	7.10966374991867	7.06140032727028	7.0875591015582	0.18182500907535	0.477909875519726	0.823464515587694
Merged-chr9-72030701-4	chr9	72030190	72031190	+	734.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	80511.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	3.3332546342006	3.39908357692724	3.36270107435884	3.33092825198233	3.36404100084464	3.20081623230391	-0.237225877267501	0.695968747781087	0.919291538728398
Merged-chr9-119401337-4	chr9	119400759	119401759	+	917.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-919.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	4.89718510155681	5.07212162750195	5.06123172817118	5.21581150544962	5.61452117707736	5.26152131993398	0.770033655041591	0.0378635809001575	0.24066555950961
Merged-chr9-116151506-1	chr9	116151006	116152006	+	757.5	f0_balb.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	23857.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.4921074568311	3.42281367201102	3.90119593282698	3.26480861285428	2.92531634478833	3.14823728943352	-2.06500141436481	0.00287126981985981	0.0406867539459971
Merged-chr8-105563554-2	chr8	105563054	105564054	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	MIRb|SINE|MIR	2510.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	3.58779876162833	3.61702719242703	3.65563390410554	3.6231064923158	3.51313936913399	3.45278402439169	-0.303915127447326	0.587707206929879	0.876033486335519
Merged-chr19-9936125-2	chr19	9935625	9936625	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36592.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	6.29917623641941	6.51102378063318	5.90219032356133	5.65684120874401	5.48871498221883	5.34195858317956	-1.35324585587246	6.41496654910451e-05	0.00194951255156278
Merged-chr11-117813610-2	chr11	117813110	117814110	+	591.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009304, exon 4 of 4)	3' UTR (NM_009304, exon 4 of 4)	3943.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	2.53340426969103	2.71353007166528	2.8553087808162	2.81385246621944	2.6889514442477	3.04180496551179	0.760668753438059	0.317146844840293	0.711087134959206
Merged-chr16-36641202-4	chr16	36640710	36641710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	24867.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.25207554169607	7.23805484129203	7.09084375319388	7.17399307403739	7.24549451141174	7.09647797902629	-0.0337748821449668	0.885950103704152	0.973636976161493
Merged-chr12-69297253-1	chr12	69296753	69297753	+	699.666687	f0_c57.idr	intron (NM_027117, intron 1 of 12)	CpG	572.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	6.06596322377762	5.91138788043325	5.82317896365549	6.10421256245726	5.69522650309455	5.833960360972	-0.0986487626868175	0.755511322048972	0.939323333778519
Merged-chr3-81981727-4	chr3	81981217	81982217	+	928.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5989.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	4.78255231333883	4.60903265259773	4.20870367391636	4.14426977654743	4.20980653271311	4.12717241937643	-1.05062747242394	0.0283271148244438	0.201502136757209
Merged-chr8-70754597-4	chr8	70754093	70755093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-86.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	7.97641893288674	7.78404076189516	7.78864922156739	7.52672003829715	8.09295234371214	7.78563017414503	-0.0352757523300045	0.889244622409229	0.974210563934999
Merged-chr9-35267812-4	chr9	35267369	35268369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	-12.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	6.8981525094052	6.74547625944868	7.06832916759553	6.50252885856729	6.655862403159	6.645585027047	-0.469636392093606	0.0728323021428062	0.354586050944861
Merged-chr4-133615687-3	chr4	133615180	133616180	+	921.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	-13512.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	6.86306545607907	7.05674127836758	6.70508527952802	4.49416204576359	4.15411689854521	4.84828221192469	-5.22721563890407	7.38798470964089e-30	4.39099594085571e-26
Merged-chr9-42123707-3	chr9	42123197	42124197	+	695.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011436, intron 1 of 47)	intron (NM_011436, intron 1 of 47)	600.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.76846375082567	2.92335139234408	3.07123183148493	3.05093187690801	2.96512519979196	3.0273557904641	0.434286620482283	0.52843336591218	0.85053360857083
Merged-chr5-90223105-2	chr5	90222605	90223605	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028088, intron 1 of 5)	intron (NR_028088, intron 1 of 5)	891.0	NR_028088	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	4.68581676072007	4.83410021936599	4.62336871235616	4.65438679863528	4.93130033446598	4.92001653409637	0.272779240394822	0.500199269728025	0.834967798557197
Merged-chr7-19076731-4	chr7	19076229	19077229	+	790.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	529.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.75355071705882	4.31963916262748	4.84814569561718	6.67795255204053	6.27631016726419	6.26584943088803	3.51120113117558	5.61329286005764e-19	3.20764801794566e-16
Merged-chr4-7154062-2	chr4	7153562	7154562	+	783.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-163339.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	3.57109640469492	3.69366835966556	3.81173753947118	3.39362195485119	3.43164919646158	3.63344681463173	-0.739478547723887	0.19606302499728	0.583855035001952
Merged-chr5-23844165-4	chr5	23843672	23844672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-27.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	6.46782004646619	6.58311322888488	6.57125185403483	6.68793158808773	6.74629495086426	6.97236133747075	0.412017063617215	0.114545928181109	0.452032914562748
Merged-chr2-113441921-7	chr2	113441445	113442445	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285459, exon 1 of 17)	exon (NM_001285459, exon 1 of 17)	881.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	6.49980854738936	6.57391128827016	6.58159978383307	6.07360353649082	6.16441292688702	6.10513504224097	-0.714941146725592	0.00825287741279178	0.0879602182353758
Merged-chr11-115699463-4	chr11	115698967	115699967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	67.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.59022435298284	7.22252956554604	7.52853875925737	7.4900892298036	7.67662970530123	7.44367240104516	0.133496099906964	0.585981156301012	0.875216158388641
Merged-chr17-83703493-4	chr17	83702974	83703974	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2689.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.96735246586425	5.06941428990132	5.14760982462364	4.8299079426521	5.12330085866686	5.11329385041198	-0.0606611666730434	0.871866706011455	0.970261003150518
Merged-chr6-57521078-4	chr6	57520576	57521576	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 3 of 6)	intron (NM_175523, intron 3 of 6)	14350.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	5.0128359804802	5.21442582297448	4.6486473978629	5.19721427782767	5.09852478796103	5.0400819712569	0.253801413910962	0.525474414485024	0.849019885443792
Merged-chr10-68274546-1	chr10	68274046	68275046	+	588.0	f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	4180.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.37498015251244	6.22548811799749	5.45003505669561	5.96187192871449	6.00687413144864	5.51604762569158	-0.402589024430375	0.302251605846248	0.698958713820873
Merged-chr3-65891289-3	chr3	65890781	65891781	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66968.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.97433534076815	2.89899381923523	2.89747308058218	3.11625971914064	3.3297083587534	3.0960978684615	1.20915252488593	0.0745300906850896	0.359236504994783
Merged-chr8-83156249-2	chr8	83155749	83156749	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-9103.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.66119726067934	3.47859855196737	3.42390911536062	3.30724142681001	3.26324160815581	3.32354783804295	-0.902635899611647	0.132898226427768	0.487807084520124
Merged-chr10-127600928-1	chr10	127600428	127601428	+	1000.0	f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20220.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.56633309963876	7.33286607033311	7.59911400193944	7.48562118270012	7.63175110111638	7.60002454970968	0.107784951127078	0.640959657742959	0.898687924380943
Merged-chr11-33163170-4	chr11	33162622	33163622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252261)	promoter-TSS (NM_001252261)	84.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	6.53023284671429	6.90402312354687	6.71503110447366	6.40257443572847	6.37779608744985	6.37553155500622	-0.548383016165545	0.0442885845926984	0.264929155053145
Merged-chr7-4080724-4	chr7	4080212	4081212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-17508.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.33195955151767	6.27416083525879	6.11398521863734	6.20849153627167	6.34443233377899	6.41644666210542	0.121449532384095	0.663463092277129	0.907232705551985
Merged-chr7-19462084-2	chr7	19461584	19462584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3590.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.33084614440618	6.5927139575608	6.78847310910802	6.65516203438584	6.93722917858348	6.67788377042528	0.306350019814709	0.276902294594193	0.674252251447813
Merged-chr2-143834204-3	chr2	143833720	143834720	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	28953.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	2.75351377218346	2.5566779170943	2.59290184119104	2.59005148578458	2.45185998819301	2.72911222796704	-0.276118618907339	0.723772434953506	1
Merged-chr11-69421446-2	chr11	69420946	69421946	+	922.68335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 84 of 85)	intron (NM_001081330, intron 84 of 85)	-7771.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	3.04421656982654	2.90856998494115	3.05276033938877	3.07214665276632	2.92608835581693	2.67947514975207	-0.451837314454774	0.539319451027938	0.855849474290651
Merged-chr4-65605601-2	chr4	65605101	65606101	+	970.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161782, intron 1 of 1)	intron (NM_001161782, intron 1 of 1)	615.0	NM_001161782	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	4.30059013471669	4.12048103857649	4.03111681571326	4.14334702005428	3.98440888415501	3.94766974126159	-0.379544174511915	0.438588455190954	0.800615097962194
Merged-chr11-23830479-4	chr11	23829985	23830985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-59515.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.76882843720483	3.46314384061191	3.3984301540045	3.30152282056475	3.43410674738522	3.78493734442343	-0.146310967614303	0.813665555848506	0.955940138311315
Merged-chr8-85143447-1	chr8	85142947	85143947	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-8477.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	5.28187440951734	5.40324178927931	5.168787488193	5.15497120014624	4.8907104345469	5.26528936001921	-0.397534193455058	0.2806240569606	0.678685264687621
Merged-chr4-47057392-4	chr4	47056897	47057897	+	959.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356426)	promoter-TSS (NM_001356426)	-91.0	NM_001356426	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	3.27984011891467	3.19271706732008	3.10781016443058	3.0583381303972	2.92788691739747	2.93350355028059	-1.01916042648987	0.128733143250954	0.479799601167289
Merged-chr10-78371758-2	chr10	78371258	78372258	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-20058.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	3.97443584831525	4.09728928736826	4.37280519311159	4.00823711153781	3.94027745011655	4.09579874892311	-0.399595649409122	0.421219926797477	0.79018977948291
Merged-chr7-96946719-2	chr7	96946220	96947220	+	678.333374	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-4807.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	4.06227191399078	4.08727889099553	3.9455961655764	3.6518444091543	3.49265997635901	3.76182484336754	-1.33685851712499	0.0127476159813692	0.119312754016297
Merged-chr13-3478161-4	chr13	3477671	3478671	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015522)	promoter-TSS (NR_015522)	-132.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	3.44669549344964	3.35630020363413	3.49803536118706	3.13659706365202	3.08271913281084	3.29863952030036	-1.08943024214821	0.0818028157042752	0.378378380628236
Merged-chr3-59212558-4	chr3	59212103	59213103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-1721.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.23104106225714	7.0858205102813	6.9763099588638	6.91713926988195	7.19609160395103	6.89087188578222	-0.134780839271794	0.598057169491335	0.880560949852866
Merged-chr3-69239402-1	chr3	69238902	69239902	+	662.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	16983.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	1.62339428465631	1.52283017635779	1.55136263559325	1.84008213975995	1.6448944841244	1.91296962023176	2.44412285996511	0.0375330076957022	1
Merged-chr4-140975646-4	chr4	140975156	140976156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 5 of 7)	intron (NM_001355515, intron 5 of 7)	-11217.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	5.9273609012369	5.94466667877607	6.29320388342983	6.10970864693632	5.92622042918956	5.85707490043052	-0.144803368819041	0.639453058453928	0.898128849808374
Merged-chr1-190826642-4	chr1	190826136	190827136	+	941.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178775, intron 8 of 14)	L1MDa|LINE|L1	85134.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.42436090405403	4.38230370516924	4.49352634642344	4.96052695137729	4.74358390061814	4.83961181282749	1.00104178680719	0.0150525586709446	0.133045814944971
Merged-chr14-47515786-3	chr14	47515286	47516286	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	L1MC5|LINE|L1	43225.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	5.52820993752624	5.82773205978562	5.76138684426283	6.07922676554179	6.45152330041518	6.34968737120416	1.02903067114538	0.000944180016066953	0.0172139638495449
Merged-chr13-103924906-2	chr13	103924406	103925406	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4320.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	3.39798291350021	3.56521259207356	3.15560484150312	3.42864315678516	3.32033500864404	3.91812414113555	0.682148853617347	0.305792862036905	0.701883343337569
Merged-chr16-32866917-4	chr16	32866472	32867472	+	858.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172615, intron 1 of 18)	intron (NM_172615, intron 1 of 18)	1394.0	NM_001200038	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	5.18184541404266	5.18847424807375	5.33079262327733	5.14852948526473	5.35627411158336	5.68946912561653	0.351727830199081	0.335542027791343	0.725694211280635
Merged-chr13-12460632-4	chr13	12460155	12461155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291057, intron 1 of 8)	intron (NM_001291057, intron 1 of 8)	1083.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	7.43660680968664	7.9138325003014	7.63505756122612	7.63274489019546	8.10482328180255	7.82341847951396	0.277726691163099	0.291413615543179	0.689051679650718
Merged-chr15-84557776-4	chr15	84557264	84558264	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177630)	promoter-TSS (NM_177630)	59.0	NM_177630	223732.0	Mm.6471	NM_177630	ENSMUSG00000055745	Rtl6	BC058638|Ldoc1l|Mar6|Mart6	retrotransposon Gag like 6	protein-coding	4.27017203687735	4.10530448956148	4.05457386253643	4.43524722910197	4.12008720422559	4.17374001291191	0.271979430011937	0.570650530390899	0.869253690275099
Merged-chr5-5420868-2	chr5	5420368	5421368	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-40617.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.94306327319301	6.81142430480817	6.74758301592189	6.7404404406925	6.79513798884561	6.6940343009016	-0.145544903034969	0.561515279834819	0.865407801976397
Merged-chr1-161360202-2	chr1	161359702	161360702	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35236.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	5.09497402497612	4.45661928456111	4.41930150632002	4.70821275677357	4.4968421624571	4.39440855979811	-0.388461734836794	0.418144762545104	0.788473936634102
Merged-chr11-29780049-2	chr11	29779549	29780549	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 26 of 41)	intron (NM_146016, intron 26 of 41)	45619.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.47889134890826	3.58439436741334	3.61968233549009	3.68843996189614	3.73179848774943	3.88952563685617	0.713488566497656	0.192512916489653	0.57958355678666
Merged-chr17-34972673-2	chr17	34972160	34973160	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-43.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	7.78017762839867	7.76811144069807	7.07510712527846	7.4342185308441	7.75954320978884	7.26548598999551	-0.116607057231595	0.695891804024395	0.919291538728398
Merged-chr10-51480567-4	chr10	51480063	51481063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-49.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	8.10636593196549	8.0700407803898	7.91913993532645	7.71645426918326	8.11704093318446	7.69352254057864	-0.242439225116927	0.314338966910054	0.708700303644741
Merged-chr10-87890079-4	chr10	87889555	87890555	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	28944.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.25680456165108	3.29614073480171	3.50143555337914	3.32774096524054	3.63179377297595	3.62287884172545	0.700549820350138	0.245534525701761	0.642645689440908
Merged-chr11-82779070-4	chr11	82778581	82779581	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126067)	TTS (NR_126067)	1961.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	4.72431152117885	4.46414083999971	5.13612267059845	5.07809161322705	5.24575777698018	5.13605465093548	0.79833914009536	0.0557464147092057	0.303917514505551
Merged-chr13-23570566-4	chr13	23570036	23571036	+	787.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178196)	promoter-TSS (NM_178196)	684.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	7.39090901471184	7.50956914905845	7.29895860936038	7.23040074831044	7.65822068956539	7.29837806128363	0.0183586752996006	0.942148447061612	0.987097394617189
Merged-chr7-75455518-4	chr7	75455018	75456018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029332)	promoter-TSS (NM_029332)	-16.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.12999915157049	5.13623179926313	4.93851781961409	5.01592003150843	4.61444603395983	5.00383889248052	-0.427249147922247	0.281075042381794	0.679258106235502
Merged-chr12-17551473-3	chr12	17551011	17552011	+	813.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013614)	TTS (NM_013614)	6638.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.39490145729397	2.40617713638786	2.36699522952181	2.7507508954814	2.87111454688922	2.7741459224345	2.60795080110837	0.00262106045371603	1
Merged-chr16-36071602-4	chr16	36071093	36072093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	-67.0	NM_198645	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	8.08270965501299	8.17047916830911	8.12258122248002	8.03620174224401	8.11262711747667	7.88894719092651	-0.148474273625631	0.483666845325077	0.826415659002453
Merged-chr3-65975537-4	chr3	65975034	65976034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17285.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	7.66181184770711	8.44292471333812	7.91794440689773	7.78884487448442	8.36751859108795	8.01241003122029	0.0385388597161717	0.897424616582282	0.976013294529412
Merged-chr15-8635613-4	chr15	8635129	8636129	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	8.07663958150261	8.08928877981921	7.78247471251917	8.43786371664467	8.81222501967622	8.08332995342363	0.689981992048069	0.00981875980262275	0.0992226579616996
Merged-chr13-98896919-4	chr13	98896403	98897403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	-5861.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	4.86930628896422	4.91940824015764	4.53612485388644	4.74700343192793	4.55748983168343	4.60437722726827	-0.371762668056164	0.373861312600025	0.757604135369744
Merged-chr10-126905782-4	chr10	126905300	126906300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4429.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	7.66502091298882	7.9715494085623	7.31759232820217	7.54847700544703	7.78130939512883	7.43211932905833	-0.125833882434744	0.643921583628561	0.89999541650119
Merged-chr5-44227125-4	chr5	44226621	44227621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	-515.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	7.06473571534045	6.84075537576542	6.86029768925277	7.11380798585685	6.53885363665366	6.4632990189446	-0.283126497058359	0.346104783382488	0.734515828466387
Merged-chr19-16140269-4	chr19	16139774	16140774	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7443.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	8.328819886873	8.58728567955772	8.02685306531035	8.28583520036645	8.43802434233651	8.1764897154472	-0.0471022832664491	0.846660477821243	0.964089366427953
Merged-chr3-88424108-2	chr3	88423608	88424608	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	PB1D10|SINE|Alu	1033.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	4.37558184633769	4.29029447145208	4.19730088913417	4.46021208054501	4.67984416799643	4.40746597429341	0.602806049112574	0.177071207276152	0.557884930520031
Merged-chr1-95314048-4	chr1	95313541	95314541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026321, exon 1 of 3)	exon (NM_026321, exon 1 of 3)	413.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	8.82975085531196	9.09651534692041	8.6847563881815	8.67083715058712	8.82608493507955	8.6201685041257	-0.240130552440697	0.27693350053824	0.674267233731847
Merged-chr5-123257266-4	chr5	123256768	123257768	+	959.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29078.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	4.44813710015948	4.43011729140045	4.0553225270904	4.07006816981505	3.81942514796145	3.91633500980769	-1.13489047197005	0.0242064957661553	0.183140034525391
Merged-chr5-66139452-2	chr5	66138952	66139952	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	11526.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.23485321160317	7.33099649982907	6.65325171590655	7.13223550104413	7.20291986536496	6.79829819720366	-0.0818867978642372	0.783203605952631	0.946983650118234
Merged-chr8-80948602-4	chr8	80948088	80949088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66318.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	6.88435934730778	6.59005248134103	6.86926915182435	6.59604162996952	6.32222207201304	6.26173410649606	-0.606578798447108	0.0302847747525411	0.210239908026818
Merged-chr4-33028410-1	chr4	33027910	33028910	+	550.0	f0_balb.idr	non-coding (NR_036602, exon 2 of 2)	non-coding (NR_036602, exon 2 of 2)	2913.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	2.24879482813369	2.28082376398243	2.16276673261102	2.30551401126302	2.14943730391091	2.4943908527903	0.580898571097853	0.509640602561005	1
Merged-chr17-84185141-3	chr17	84184685	84185685	+	760.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001806, exon 2 of 2)	3' UTR (NM_001001806, exon 2 of 2)	2762.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.59032203902976	6.36707216676164	5.78814068720529	6.07183086868149	6.54679342940838	6.32704525347881	0.610258812189752	0.0927446031831732	0.405701265916025
Merged-chr8-90861716-3	chr8	90861207	90862207	+	732.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	32872.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.71036578676174	3.41220351165596	3.68013891575983	3.64619068921657	3.48946590430493	3.69879119819411	0.01475810150402	0.979374080546235	0.995221944653849
Merged-chr1-128590975-4	chr1	128590538	128591538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356509, intron 1 of 1)	CpG	1261.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.61718319714491	7.02077092985497	6.69558048117427	5.24811479058093	5.17246415737961	5.56820254851897	-2.58205103403799	1.04008287273888e-15	3.27815210889609e-13
Merged-chr7-25758644-2	chr7	25758144	25759144	+	657.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-3885.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	2.38858402026223	2.48959551991686	2.61469349501629	2.53602336953072	2.28768903069125	2.62710620495637	-0.0659371304971777	0.936200448935566	1
Merged-chr16-38239945-4	chr16	38239440	38240440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	54884.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	4.59641324096686	4.51838999901921	4.50294774472772	4.17731606919269	4.49329971066399	4.44280883703427	-0.402872837964289	0.362444993268892	0.747881537505714
Merged-chr19-14668012-2	chr19	14667512	14668512	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-69829.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.63615306310865	3.47926423895799	3.87787756569419	3.83149600390335	3.82777510632978	4.58873376143423	1.38982157537684	0.0201650616587396	0.162382120439408
Merged-chr2-91724098-2	chr2	91723552	91724552	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-6086.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	5.53546638082517	5.43979528365778	5.29351805837083	5.17301515935941	5.40607541216055	5.3254625319952	-0.244007176530288	0.479710950179398	0.824365731981152
Merged-chr15-65106113-3	chr15	65105629	65106629	+	685.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183833.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	3.04213885265151	3.15256052160034	3.30466556201405	3.1226384596089	2.8209668091151	2.91077828947037	-0.961608128601238	0.166855398054556	0.54240433228749
Merged-chr1-52120580-2	chr1	52120080	52121080	+	924.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205314, intron 2 of 24)	intron (NM_001205314, intron 2 of 24)	958.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	4.28139299355056	4.67585691670524	4.3464419760622	4.90172690084378	5.01407163240749	4.50738848476893	0.926397248044349	0.0436044222773444	0.262421290962916
Merged-chr4-131858511-2	chr4	131858011	131859011	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 4 of 9)	MIR3|SINE|MIR	15040.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	2.79489036407781	2.59288215743608	2.9284065987855	2.57967911104503	2.42092758606901	2.64328795347667	-1.30972031926016	0.101175337332318	0.424204614205772
Merged-chr6-15729746-2	chr6	15729246	15730246	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	B1_Mm|SINE|Alu	9085.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	6.18831969454721	6.36293365058256	5.96233490366845	5.76983605652238	5.69426120354509	6.0002655418254	-0.649795644431897	0.0362767864285208	0.234320667997544
Merged-chr16-57220884-2	chr16	57220384	57221384	+	648.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	10582.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	2.77035747187529	2.4715934548531	2.77928650359446	3.02781682802974	2.8646016431425	3.09145483339609	1.63947820731326	0.0360871115561246	0.23363449277139
Merged-chr2-167745096-2	chr2	167744615	167745615	+	595.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53938.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	2.73656075259678	2.94620517699382	3.13286317509691	3.33549748611975	2.88799407356259	3.20532579792192	0.939232576125683	0.195694903529368	0.583424633925894
Merged-chr15-25358740-4	chr15	25358241	25359241	+	914.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55023.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.05820499817679	6.05710995999033	5.96257077889389	6.88586137556833	6.88121248027396	6.27173326035085	1.16057954489931	0.000162788449929881	0.00424218645216585
Merged-chr7-62464499-4	chr7	62463998	62464998	+	900.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013788)	promoter-TSS (NM_013788)	12.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	4.4654315143447	4.13922574816034	4.36962808991444	3.45645582447083	3.21967313250362	3.36687973546496	-3.75706841938501	4.26907113350625e-08	3.36065156931682e-06
Merged-chr15-58687950-4	chr15	58687466	58688466	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135461.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.77356374291545	4.69186861846231	4.81479395476514	4.6153832531003	4.70134228354735	4.64843493982679	-0.23364128362891	0.558946814092267	0.86489961641779
Merged-chr10-128744876-2	chr10	128744376	128745376	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016811)	promoter-TSS (NM_016811)	208.0	NM_001358745	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	3.91588439724354	3.84011673136842	3.92575049154461	3.67699635217009	3.86140147307028	3.63046336451004	-0.50439684721463	0.344295714220282	0.732980075743821
Merged-chr6-124904951-2	chr6	124904451	124905451	+	709.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008479, exon 7 of 8)	exon (NM_008479, exon 7 of 8)	6754.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	4.13691906026536	4.47631820822383	4.27289580524471	4.21870838072193	4.45974549370909	4.24870763571205	0.0377230143573495	0.935967866763998	0.986014061025137
Merged-chr7-100960847-4	chr7	100960265	100961265	+	925.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3601.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	7.18312097480671	7.23903287569729	6.87126477632807	6.71001848789636	6.91163178644768	6.82398266779908	-0.452497034408004	0.0799157864205287	0.373826892089012
Merged-chr9-90226043-1	chr9	90225543	90226543	+	625.0	f0_c57.idr	exon (NM_194334, exon 6 of 13)	exon (NM_194334, exon 6 of 13)	44726.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.99384539581226	6.98453838183375	6.88220513428032	6.64233932974916	6.72956443037382	6.55540746867421	-0.477308596167337	0.0565316496318363	0.306601844776811
Merged-chr19-32292139-3	chr19	32291614	32292614	+	857.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	57202.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.84655052659218	4.98554812714647	4.51419882053736	4.38501534764017	4.05897716561064	4.03838789198313	-1.60961097383966	0.000712131131368315	0.0138413938750046
Merged-chr4-134918610-4	chr4	134918126	134919126	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-3710.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	5.76891090665346	5.83739950174472	6.21253869057662	6.28220485651857	6.53533757784803	6.10428426056502	0.658646233824989	0.0369410142878914	0.236900802841377
Merged-chr11-51815456-3	chr11	51814977	51815977	+	621.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	42004.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.12434947682228	3.07218211330461	3.20038662719747	3.09245383494802	3.06034810064973	3.21539048930969	-0.0451715341811849	0.943891112410981	0.987495247303971
Merged-chr5-114379410-4	chr5	114378928	114379928	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159941, intron 1 of 6)	intron (NM_001159941, intron 1 of 6)	1077.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	4.56888848798006	4.43936415360144	4.60859189273118	4.48141642111139	3.99771494080536	4.51610821224548	-0.500119827349536	0.291019515411242	0.688788068334381
Merged-chr6-72102171-2	chr6	72101671	72102671	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	4563.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	6.10240464907658	6.44013194530166	6.11099188530649	6.60620996565353	6.58316817841077	5.81344498533189	0.268595458350848	0.438363709531855	0.800495271534183
Merged-chr15-100599021-4	chr15	100598513	100599513	+	912.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	971.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	7.01237488258667	7.29352791291698	6.7037674903184	6.7597876228172	7.15322939872099	7.13632293842265	-0.00954763542309558	0.973602851012171	0.994039095662068
Merged-chr9-106330366-4	chr9	106329865	106330865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-38267.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.27415663315642	4.14587571311275	4.18078202071572	4.68129448674251	4.49813883108475	4.9923648247585	1.32708581497634	0.00384076528664487	0.0503994755613996
Merged-chr11-76496076-2	chr11	76495576	76496576	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	B3A|SINE|B2	-1581.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.60133708113198	4.61278123650965	4.89902603615341	4.44595423690519	4.66874445397209	4.50660525586388	-0.362779389561116	0.395105602016744	0.772579826044138
Merged-chr3-130708150-1	chr3	130707650	130708650	+	540.0	f1_balb.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	1294.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	3.10202338622414	3.43097696423317	3.29168000761044	3.39271460083467	3.4102506831352	3.24662031844714	0.282692309568301	0.653446477615431	0.903374227660526
Merged-chr9-113663666-4	chr9	113663156	113664156	+	908.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 12 of 17)	B4A|SINE|B4	44603.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	3.89071691714378	3.77232878160043	3.94785545100628	3.80995619557353	3.84546016475874	3.76666443514487	-0.183472339502804	0.722535621644088	0.928821151735982
Merged-chr18-53177354-4	chr18	53176838	53177838	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1046.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	7.6627588165711	8.16236800138744	7.61825199084348	8.02872680985985	8.41738233908152	7.93124454030393	0.429907163035214	0.117224805901197	0.457311976431135
Merged-chr11-114934429-4	chr11	114933926	114934926	+	922.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199221)	promoter-TSS (NM_199221)	-40.0	NM_199221	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.80083784027861	6.71629473568273	6.7635295023152	6.64532852557061	6.59088937901945	6.30578728592415	-0.361220202946006	0.174282418355997	0.553423314145592
Merged-chr11-6497400-1	chr11	6496900	6497900	+	791.0	f1_c57bl6.idr	Intergenic	Intergenic	-21324.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	2.95147488170101	2.79008789223236	3.01138211419642	3.38607731470027	3.91343937553006	3.71747794280871	3.68165325949257	4.2197256627639e-06	0.0001907196811229
Merged-chr4-15289124-4	chr4	15288625	15289625	+	820.391663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23305.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	3.25446438940863	3.3374496916056	3.48102686723533	3.34165236737389	3.21666257674179	3.44567799751363	-0.0953668457784314	0.875518572030178	0.971052726689041
Merged-chr16-20293990-1	chr16	20293490	20294490	+	961.0	f0_balb.idr	intron (NM_001005767, intron 3 of 9)	intron (NM_001005767, intron 3 of 9)	8372.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	3.60859739137854	3.7359842409273	3.96884722663531	3.54733739433035	3.64755128651898	3.59363995893705	-0.586499979615338	0.293717950281198	0.690424156263798
Merged-chr6-129713004-1	chr6	129712504	129713504	+	631.0	f0_c57.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	4128.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	4.21883058683445	4.13786898239941	4.49914930759969	4.29515676618407	4.12097112026847	4.67569042386735	0.229248164283023	0.639670687817656	0.898199312621371
Merged-chr10-117710198-4	chr10	117709701	117710701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010786, intron 1 of 11)	CpG-1528	557.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	8.14788465534019	8.32099310167794	8.09700869895996	8.21277917928848	8.173409205661	8.15288667681401	-0.0216866789644313	0.91768727593035	0.981718564389729
Merged-chr1-173425773-2	chr1	173425273	173426273	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5169.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.79916603270982	5.64522814162971	5.88354749533255	5.79764534727247	5.87563440377393	5.96758972971801	0.189604573754144	0.535503891472812	0.853563387841999
Merged-chr18-23867539-2	chr18	23867039	23868039	+	702.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	MLT1E1A|LTR|ERVL-MaLR	63569.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.49226642676029	5.41355823094332	5.85188207367029	5.62828799089198	5.41287601776356	5.38234195561517	-0.202953894148254	0.559461921826203	0.864958249988122
Merged-chr11-80508664-4	chr11	80508138	80509138	+	837.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126552, exon 1 of 3)	non-coding (NR_126552, exon 1 of 3)	468.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	3.85079698072499	3.84642546535439	3.95636821463134	3.95218499215629	3.83450675454967	3.66159879797386	-0.174704211718003	0.738515442223016	0.934032187674406
Merged-chr4-145215125-2	chr4	145214625	145215625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20120.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.5392491837283	5.33802094260426	5.70763881481309	5.43749406762706	5.58860970295094	5.21195775529898	-0.179571228455041	0.610960802729567	0.885849400663435
Merged-chr4-117191397-3	chr4	117190882	117191882	+	595.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8758.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.56425816753763	6.68008221097945	6.08935581967025	4.93179865022073	4.62728359896122	4.99798316484069	-3.14265000613522	1.74662553439599e-17	7.81361384225922e-15
Merged-chr15-58554232-4	chr15	58553780	58554780	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138812.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.48048431264252	6.30915108200161	6.21090579515338	6.459124176854	6.77737191056607	6.48927513168372	0.400282515474941	0.156056898600373	0.52629118545535
Merged-chr4-44072675-4	chr4	44072162	44073162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190414)	promoter-TSS (NM_001190414)	55.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	6.61326833452176	6.65340734585581	5.87421847055954	6.35385781194181	5.96984475900039	5.64341967684602	-0.677045132671605	0.0703499050609925	0.347481592088037
Merged-chr9-50533523-4	chr9	50533019	50534019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133217, exon 12 of 12)	exon (NM_133217, exon 12 of 12)	-4878.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	5.01107995382044	5.17782583270296	5.19787155301513	5.02933138899674	4.90076332742147	5.46369164973657	0.0210953274578884	0.956951942664597	0.989887454023164
Merged-chr15-50698669-1	chr15	50698169	50699169	+	1000.0	f0_balb.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190380.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.77359268435796	5.52019974679146	5.07457578649013	5.34396403139341	5.54743566126418	5.13952886477153	-0.265207900630374	0.499440414856536	0.834486707618126
Merged-chr12-73681389-4	chr12	73680878	73681878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	96582.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.44581247157431	7.39067758828209	7.05256839229898	7.22868309754759	7.39507129639619	7.04154119042761	-0.115684638304624	0.654678634607991	0.903878958900373
Merged-chr4-150862858-4	chr4	150862371	150863371	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	7801.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	4.84158455923884	4.77192991959159	4.72395448041015	4.86383668593051	4.57634260762782	4.6694116606322	-0.177909812671075	0.659686221080677	0.905586631697299
Merged-chr10-128336568-2	chr10	128336068	128337068	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	4.08302054311137	3.75844089839094	4.24332147593988	4.12914983812169	3.77643904757897	4.39116098891041	0.22034202513716	0.687616849490021	0.917193226920892
Merged-chr1-180303816-4	chr1	180303301	180304301	+	941.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26675.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	5.2629108203864	4.87838418582953	5.25953245422563	5.59902195758591	5.29553644442362	5.87324000990645	0.899041060809454	0.0192257133440768	0.157336989968618
Merged-chr7-19458860-4	chr7	19458358	19459358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172279)	promoter-TSS (NM_172279)	-364.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.91735863127473	6.89649730319174	7.02820692795288	7.4650532261423	7.32958358912699	7.29437250921109	0.634923308597962	0.00702430980433794	0.0783283032987988
Merged-chr2-152848639-2	chr2	152848139	152849139	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028109, intron 1 of 17)	intron (NM_028109, intron 1 of 17)	675.0	NM_028109	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	5.00151371802109	4.86749186997395	4.94359970223454	5.27901039077412	5.16636961518871	5.00931821358512	0.473742113303853	0.199865043336344	0.588498196182828
Merged-chr8-70572677-2	chr8	70572178	70573178	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	-21803.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	3.19955822069072	2.87797293257316	3.15519560620856	2.5337838769914	2.706499992536	2.75312955278718	-2.22612611522234	0.00601701394567213	0.0699153325501308
Merged-chr19-3328131-2	chr19	3327631	3328631	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	4830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	3.0764161191278	3.04642600083948	3.02790854986772	2.78859026930356	2.69823231834865	3.26593814087768	-0.526963116857848	0.479700201867819	0.824364286685341
Merged-chr17-35202069-4	chr17	35201578	35202578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-71.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	6.99686382074103	6.24071928935064	6.43842301167683	6.81356011035034	6.64313603159021	6.81579414777558	0.234216293986274	0.460105764326734	0.814248395979731
Merged-chr5-125273867-4	chr5	125273318	125274318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	67276.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.45829649619353	4.29038385577133	4.64803788776467	4.51150184318572	4.1687781599465	4.55984399914469	-0.128276280843495	0.781232200185132	0.946170805022375
Merged-chr2-11603228-4	chr2	11602712	11603712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-13.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	7.78075638019091	7.81233639285398	7.56127525750856	7.59787239897731	7.41371785551853	7.37674347651749	-0.37864514340656	0.10183719019613	0.425738109693493
Merged-chr7-141165033-4	chr7	141164519	141165519	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 2 of 9)	intron (NM_001172100, intron 2 of 9)	3667.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	3.97203534356562	3.98221193537624	4.33120612860977	3.85582578209548	3.62045301284357	4.01173159962361	-0.819011728763066	0.12564867172932	0.474234540381622
Merged-chr1-93305906-4	chr1	93305404	93306404	+	908.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178051)	promoter-TSS (NM_178051)	-25.0	NM_178051	69821.0	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	4.12954940554315	4.5200148737029	4.22796214254114	4.62350069326462	4.40383997641586	4.34440029524901	0.397395901703573	0.395033323182987	0.772579826044138
Merged-chr1-166921164-4	chr1	166920652	166921652	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78578.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	3.58187960521519	3.63567200814228	3.62226977362705	3.83421211592994	4.08333280884923	4.17997642187724	1.365539361855	0.0108164233694111	0.106196218964243
Merged-chr15-84256472-4	chr15	84255989	84256989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	24446.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.80312355916775	5.86194094755828	5.68773319209364	5.842205701954	5.88767424392021	5.63829607365803	0.0197016040329611	0.94938194140078	0.988193302227622
Merged-chr12-30585249-1	chr12	30584749	30585749	+	672.0	f1_balb.idr	intron (NM_172049, intron 1 of 4)	intron (NM_172049, intron 1 of 4)	806.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	3.78389892661096	3.70725686722258	3.68708555913419	3.41076553052717	3.40737576106345	3.30743537754157	-1.27727718501991	0.0285321590045018	0.202309662245128
Merged-chr7-67430210-1	chr7	67429710	67430710	+	576.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-57352.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.37710643824075	4.08065066779129	4.29542026939723	4.47383351074747	4.42476916957769	4.3634719619367	0.4428473757734	0.329046470271735	0.721134108525049
Merged-chr15-75791334-3	chr15	75790828	75791828	+	852.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	-43406.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	3.23218991378413	3.12034738196564	2.98750112057896	3.05876799301612	2.87072178523866	3.23656521681972	-0.282786666690654	0.679800876403741	0.914056754309378
Merged-chr2-116933417-2	chr2	116932917	116933917	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	33265.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.87369660156735	5.79861749930755	6.00811159491106	5.57713691649211	5.80160526464185	6.06841559387154	-0.120495067338232	0.707880612400252	0.923606271223831
Merged-chr5-117313602-4	chr5	117313106	117314106	+	766.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5660.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	2.76197037291514	2.8863374437118	3.00424121921865	3.00056674750827	3.12885581132583	2.95696519875023	0.720674002619676	0.298657108528028	0.695427199902635
Merged-chr1-157313649-1	chr1	157313149	157314149	+	646.0	f0_balb.idr	intron (NM_177644, intron 1 of 17)	A-rich|Low_complexity|Low_complexity	-98703.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	2.88875548068894	2.7479487544168	3.20919572285158	2.54945216634619	2.87587735948297	2.63764776535738	-1.30047411110521	0.11219336844638	0.447436626208972
Merged-chr13-21752586-2	chr13	21752086	21753086	+	570.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178183)	TTS (NM_178183)	1326.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	4.12710489897269	4.70998855968324	4.4927497472085	5.11864139771506	5.3740878554227	5.43591334485849	1.8750523742725	2.52015035283708e-05	0.000889676158501772
Merged-chr13-12394448-2	chr13	12393948	12394948	+	838.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-927.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	6.05914487680536	6.35834414233149	6.30914726839605	6.19401425178801	6.30741987388965	6.05207379283283	-0.0831626880744584	0.77564167477931	0.944735306668181
Merged-chr8-78630688-5	chr8	78630194	78631194	+	963.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	121366.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	4.94858611292412	5.24685726091178	4.99097230685659	4.87934047053635	4.52802889508199	5.05559418327408	-0.541710864231008	0.189532807143612	0.575424009078179
Merged-chr8-105297669-4	chr8	105297223	105298223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148952)	promoter-TSS (NM_148952)	60.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	5.92618906449176	6.02759571257957	6.31809868125062	6.13789346249751	6.03832868824055	6.20524378440404	0.0575061099851773	0.847330631642002	0.964258967664156
Merged-chr17-5629008-2	chr17	5628508	5629508	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	136408.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.18568409808298	2.76412293297839	3.32455176510855	3.00561539860975	2.8140304477988	3.00645696241082	-0.755502553675408	0.303234615089038	0.69988332222588
Merged-chr6-71200743-4	chr6	71200250	71201250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017399, intron 1 of 3)	intron (NM_017399, intron 1 of 3)	871.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	3.81905962888657	3.47883205508191	3.44653509587881	3.57710087937033	3.28231756525614	3.46166883249594	-0.56291415324742	0.353661643905564	0.740897053888057
Merged-chr1-131076228-1	chr1	131075728	131076728	+	567.0	f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	21615.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.10976177334872	3.9278744686941	4.00066828700101	3.91839672129718	3.52769927523917	3.59592498255681	-1.0351155277458	0.0599977976066259	0.317073284320274
Merged-chr9-57638870-2	chr9	57638370	57639370	+	911.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	6783.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.86235108901573	6.43958907954676	6.52893883969914	6.38817793052621	6.64557473470731	6.29450306815059	0.251297372159988	0.440005835258985	0.801567033070239
Merged-chr4-58304082-3	chr4	58303572	58304572	+	960.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18110.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	2.03203702575432	1.8289058334993	2.05692309855465	1.7347025855833	1.69789515898718	1.79365713365683	-2.32396497233089	0.0361260285148356	1
Merged-chr5-36751206-2	chr5	36750706	36751706	+	809.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2527.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.41186793284099	3.1112947285871	3.38326801491352	3.02624704843842	3.10216100960266	3.29136279591416	-0.698881865086116	0.284682924260839	0.682421085006849
Merged-chr4-96591662-3	chr4	96591082	96592082	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028979)	promoter-TSS (NM_028979)	-97.0	NM_028979	74519.0	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	2.99098589186461	3.22795902628463	3.09752024635562	2.4619582321961	2.36775515777975	2.61242230351685	-5.37084347035004	1.92067238531905e-05	0.000704963863421385
Merged-chr2-117962138-4	chr2	117961635	117962635	+	973.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	140207.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	6.35423123184643	6.47016962445757	6.72237505096438	6.62413105675871	6.78532983779288	6.68800680353877	0.300856348243311	0.264927468198092	0.662780660668275
Merged-chr8-22932132-2	chr8	22931632	22932632	+	551.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 16 of 18)	exon (NM_001081149, exon 16 of 18)	-42704.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	2.8362177712438	3.05692602376053	3.12514570664779	2.96442986503557	2.71760983423905	3.08425004932143	-0.395919334906489	0.581474989013792	0.873298754324848
Merged-chr1-36569558-4	chr1	36569087	36570087	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11206.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	6.95719418039935	6.58896760275023	7.02946840945829	6.85882904713273	6.98910890795121	7.03603324037539	0.14782683398523	0.579896328416839	0.872644657556124
Merged-chr8-119830093-2	chr8	119829593	119830593	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	10486.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.72404134489434	4.31578465852562	4.72247837068142	4.40627600277663	4.46039966692334	4.71345813030473	-0.171501772698712	0.701913325724656	0.921616258659442
Merged-chr11-106739897-2	chr11	106739397	106740397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-11329.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	4.78763571919002	4.39357257267581	4.65407003808618	4.9388449657468	4.85626997270705	5.35060614926737	0.975440856304075	0.023218154197277	0.178255782842501
Merged-chr4-114982757-4	chr4	114982254	114983254	+	712.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	B3|SINE|B2	4474.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	4.6709874299781	5.13610304679331	5.19007974399882	5.81491655294488	6.0509341717092	5.70297428138193	1.66063409170215	8.06655938338018e-06	0.000332113940213903
Merged-chr15-66747595-2	chr15	66747095	66748095	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	76825.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.32927850605787	4.18486551038689	4.16245617379805	3.59452462220045	3.74738627929005	4.0460627090056	-1.30216191389937	0.0133741100742437	0.123032940968233
Merged-chr13-44660006-4	chr13	44659518	44660518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70756.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	5.45304797163231	5.35015447090018	5.20912097255469	5.64192276353474	5.59321958678774	5.0923140679048	0.253665907564466	0.48993980425065	0.829980359087456
Merged-chr13-67637782-4	chr13	67637283	67638283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183146)	promoter-TSS (NM_183146)	-30.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	7.25630159118367	8.04452794531849	7.81744550012239	7.80710260093572	7.81526508290046	7.38644146563814	-0.0868194635747689	0.769365342002034	0.94311644544783
Merged-chr15-73144393-2	chr15	73143893	73144893	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 2 of 18)	intron (NM_153178, intron 2 of 18)	40554.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	1.5094712060771	1.53760144585538	1.6020766941586	1.76741246735889	1.61988008544956	1.88857960696319	2.2397052793287	0.0504192938349568	1
Merged-chr4-123960973-2	chr4	123960473	123961473	+	925.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43540.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	3.53395385932743	3.92948737552774	3.61277461933444	3.81607995136616	3.58856175152	3.45354845388417	-0.262878464215921	0.655202516787396	0.904167065613807
Merged-chr11-115676933-4	chr11	115676424	115677424	+	935.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	22610.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.31234801703349	6.066171716195	5.53517525519789	6.26080882464912	6.01462795926407	5.56804434214888	-0.059998144012707	0.874446145680976	0.970754540400126
Merged-chr7-16052958-4	chr7	16052478	16053478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18867.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.56278001310239	6.70920950056609	6.77585030798624	6.63332676560777	7.0760710029081	6.7097932638124	0.234455754517287	0.39664759445889	0.773701467493871
Merged-chr17-56615936-2	chr17	56615436	56616436	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028782, exon 13 of 18)	exon (NM_028782, exon 13 of 18)	2541.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	2.31589860481164	2.28429965448489	2.54091598258392	2.41589389128242	2.24732590560964	2.61444852544774	0.302142263911397	0.721343590949678	1
Merged-chr9-107888856-1	chr9	107888356	107889356	+	540.0	f1_c57bl6.idr	intron (NM_028369, intron 1 of 5)	intron (NM_028369, intron 1 of 5)	727.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	3.980496607345	3.8599899745955	3.99986663437459	4.06925013170428	3.8758913735587	4.06838129309392	0.170575965177188	0.732351941567093	0.931723932448277
Merged-chr10-95322365-4	chr10	95321868	95322868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	1341.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	7.58409985703747	7.46149073430367	7.30473318622992	7.79397803690797	7.8200967767286	7.52643502265734	0.385669214033075	0.103643105172655	0.429265081891802
Merged-chr5-145083810-4	chr5	145083318	145084318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019767)	promoter-TSS (NM_019767)	-51.0	NM_019767	56443.0	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	6.13203903140082	6.08041608011292	6.03644186864496	6.25994990970352	6.39091339311256	6.05109890577472	0.281248130940447	0.330248329662182	0.721789606895393
Merged-chr17-46773969-2	chr17	46773469	46774469	+	722.6999509999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025966)	TTS (NM_025966)	1334.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	4.18736935194899	4.14870957063885	4.3573727279626	4.29865575543393	3.90333245108049	4.50371728328364	0.0499028856902327	0.920801190778623	0.982463724790289
Merged-chr19-4170744-2	chr19	4170244	4171244	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134148, intron 7 of 9)	intron (NM_134148, intron 7 of 9)	4735.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	3.04250676585384	3.11084210027052	2.99437961458215	2.90583494972741	2.79752442752387	2.81864625508375	-1.03597576806122	0.1372997344249	0.495095532840233
Merged-chr7-75781095-2	chr7	75780595	75781595	+	816.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-67243.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.57199323476315	3.45842405162504	3.45134059739642	3.46813002186029	3.68099738210285	3.46631139213863	0.189975930367246	0.742591539357488	0.935299421834751
Merged-chr2-45274950-2	chr2	45274450	45275450	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157508.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.25070785727519	5.72961658308421	5.64987536155436	5.42045916341656	5.66373384855143	5.90469871746924	0.210170108457315	0.55915837930858	0.864901733108576
Merged-chr5-123523525-2	chr5	123523025	123524025	+	684.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106105)	promoter-TSS (NR_106105)	639.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	5.64951763282854	5.79059963417473	5.6281907973256	5.31529523352689	5.45625238500819	5.52327265472807	-0.496716924515521	0.126600720365519	0.475549804679232
Merged-chr11-101665524-4	chr11	101665020	101666020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025404)	promoter-TSS (NM_025404)	-21.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	7.08270364394581	7.06990911877245	7.06469790197145	7.17917592358085	7.33964607949034	6.92848553184118	0.148402948091231	0.553142280433944	0.862149721276531
Merged-chr5-43770762-4	chr5	43770289	43771289	+	994.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159963, exon 3 of 11)	exon (NM_001159963, exon 3 of 11)	11360.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.12496976312331	5.00357692834077	5.42191427877811	4.99919589561489	5.04707053329995	5.40099402852453	-0.068702338409261	0.858361268848852	0.966893979238307
Merged-chr7-126780134-4	chr7	126779674	126780674	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026875, exon 5 of 5)	3' UTR (NM_026875, exon 5 of 5)	-1309.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	5.33818674659964	5.02541563782311	4.84553638158878	4.94055485105228	4.94610795800821	4.95057098758133	-0.322771133306018	0.408095148467281	0.781926100186554
Merged-chr11-95834940-3	chr11	95834430	95835430	+	993.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7365.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.95508967833892	6.90072831805001	7.22360235540899	7.13822552303578	7.21808527347329	6.89225792522099	0.109318765054463	0.672134048365423	0.910735325716773
Merged-chr9-100455251-3	chr9	100454708	100455708	+	717.8555299999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31265.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.29451630127471	5.07505948931708	5.66023926974274	4.91560355097214	4.62210746448553	5.08181991573719	-1.00953343396659	0.013983767194371	0.126666808263577
Merged-chr2-93941877-4	chr2	93941387	93942387	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15213.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	4.2224338511541	4.07722238736694	4.12107189089487	3.82341854769204	4.24019363999864	4.40534308102256	0.0930744072204407	0.85474354187121	0.965987623019113
Merged-chr11-70786724-2	chr11	70786224	70787224	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	22277.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	8.32173362304502	7.96011155867537	7.91594526316124	8.14078832032634	8.52548538447759	7.88983565270498	0.194180513559617	0.468700352749842	0.818694631884688
Merged-chr19-37434163-2	chr19	37433663	37434663	+	791.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-678.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	5.64466852558606	5.36899450018316	5.60069956524538	5.38620572059594	5.08283156907942	5.34850601835979	-0.527548858124254	0.132905967074794	0.487807084520124
Merged-chr11-116857357-2	chr11	116856725	116857725	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	intron (NM_178620, intron 2 of 12)	3225.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	3.21067270326345	3.1541545062524	2.92148740659174	3.16355884107816	3.13493494686806	3.40595669722722	0.541813726088923	0.42026754439659	0.789521469804967
Merged-chr17-5609273-2	chr17	5608773	5609773	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RMER17A|LTR|ERVK	116673.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.04910327039288	3.14624336890738	2.97224309475506	2.89574328734747	2.8300021674268	3.04490825665153	-0.66507969561196	0.332440043497959	0.723634990304456
Merged-chr4-156209721-1	chr4	156209221	156210221	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-6206.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	5.3060145911204	5.55730720813465	5.10537106103357	5.26703930676286	5.49864118332676	5.24116756829806	0.0030162782430154	0.99341751944501	0.998651348330892
Merged-chr2-159735368-2	chr2	159734800	159735800	+	736.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-212041.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	3.26249066113595	3.56659717349507	3.65994919432114	3.65147191569547	4.15911082308011	4.02522711622396	1.54060119159476	0.0100872052290993	0.100990996595223
Merged-chr9-111035486-2	chr9	111034989	111035989	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 13 of 16)	HAL1|LINE|L1	16197.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	4.68843029110509	4.34036159702926	4.7371786025882	4.4188995368465	4.66669897038102	4.29954780366781	-0.276119071157143	0.546626666674901	0.858875010445646
Merged-chr11-20176228-3	chr11	20175718	20176718	+	859.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25194.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	3.23138303678055	3.08927635275799	3.16454528837948	3.06645985649036	2.91532957064461	3.45087682483512	-0.027338473702494	0.968136759605566	0.992682259282642
Merged-chr2-126164799-4	chr2	126164297	126165297	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026981, exon 5 of 5)	exon (NM_026981, exon 5 of 5)	12656.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	3.29851889794919	3.27429676424033	3.4217295431838	3.34627370161665	3.55390970119897	3.54549659761299	0.603264784012688	0.309770029905355	0.705458703461281
Merged-chr4-135267145-4	chr4	135266643	135267643	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	5617.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	3.84530306965376	4.12607440759927	4.22208975467436	3.96819372039028	3.64571251106435	3.7100247547917	-0.890248368926707	0.0989039483879138	0.419360626745723
Merged-chr8-36952396-7	chr8	36951867	36952867	+	911.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	75.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.51584870906743	6.61129702182198	6.26523498089113	6.70289343033127	6.68371880660963	6.40766814799957	0.208645370577355	0.455014629481083	0.810667376538136
Merged-chr12-79029141-4	chr12	79028643	79029643	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181073)	promoter-TSS (NM_181073)	-20.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	4.78580367816189	4.50263013332465	4.58415464079228	4.34118096840583	4.18416315213232	3.99213862052641	-1.151802302206	0.0139884095395425	0.126688289976622
Merged-chr7-73558623-4	chr7	73558131	73559131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-236.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	8.27037530561767	8.34633063843673	7.88041469063934	8.04972718760593	8.25598606333515	7.88651229644	-0.153864950724785	0.531997392023724	0.851867550687707
Merged-chr9-35046422-2	chr9	35045922	35046922	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009178)	TTS (NM_009178)	-70306.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.65575338483019	2.51164636544884	2.91832666296888	2.61512407135742	2.40392128432118	2.75948897328967	-0.576597895263795	0.476020233336463	0.822320085856715
Merged-chr11-32565972-1	chr11	32565472	32566472	+	551.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	MER2|DNA|TcMar-Tigger	32706.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.62370076177442	5.56778071023303	5.79391420205708	5.19432362986354	5.46937354598431	5.36790245625524	-0.580244740471505	0.0861360392064952	0.388698278122135
Merged-chr15-100305471-2	chr15	100304971	100305971	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	654.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	5.02807806128387	5.20651505421589	5.16119244947645	4.8422564020329	4.96196552270103	5.19284197029328	-0.285521057195842	0.446294729262929	0.80579997466659
Merged-chr14-44988351-8	chr14	44987860	44988860	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008964, exon 1 of 2)	5' UTR (NM_008964, exon 1 of 2)	249.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	7.20257388937825	7.31443056976596	7.04585122077291	7.08816320900085	7.23526646011835	7.33331043049241	0.0319088455060499	0.895645821732865	0.975665889379756
Merged-chr18-60723374-4	chr18	60722877	60723877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	4189.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.83660667999094	5.44553088586683	5.37839986096769	5.48150595449103	5.48741334902238	5.5033702675006	-0.168207007986843	0.626390568307141	0.892905955041811
Merged-chr5-105507773-4	chr5	105507239	105508239	+	921.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11732.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.14522423820168	6.26416447672535	5.84995234113949	4.2185755769145	3.94135293665928	4.84300868880424	-3.74206760781078	5.41515232281448e-06	0.000236900102248553
Merged-chr10-61452331-3	chr10	61451855	61452855	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	CpG	314.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	8.08219219389976	8.2792388931165	8.01781358452789	8.11478070257044	8.26818566436234	8.04422033662201	0.0210148799514467	0.923842532714543	0.982786900372783
Merged-chr5-148708216-4	chr5	148707721	148708721	+	955.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-33619.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.28317423513896	3.32668344598913	3.3370732551066	3.87672199763163	3.74264996780653	3.58473542753557	1.58390625221027	0.0070025616484902	0.0781373221878905
Merged-chr12-56030726-1	chr12	56030226	56031226	+	576.5	f0_balb.idr	Intergenic	Intergenic	194360.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	3.42725911432793	3.71340516503315	3.37899061322177	3.43834546290605	3.24853539867388	3.3344904131695	-0.687003611834669	0.261008971029403	0.658521360261207
Merged-chr18-32163446-3	chr18	32162952	32163952	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011946, exon 1 of 17)	5' UTR (NM_011946, exon 1 of 17)	363.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	8.50619789519113	8.99778361084835	8.2927026017966	8.56238325359322	8.48405271284207	8.31633350048401	-0.250612106673312	0.335103425793718	0.725339338581532
Merged-chr9-119983202-4	chr9	119982709	119983709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-186.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	8.52873490012634	8.55811178959895	8.11829973280613	8.45502416537183	8.65288825092931	8.30876321713533	0.0852510999929181	0.720773602361007	0.928324696220711
Merged-chr11-69396954-6	chr11	69396609	69397609	+	838.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030083)	TTS (NM_030083)	1125.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	4.85895179370964	5.07213170409583	5.19736378692254	5.42562359610861	5.37083468439981	5.19577945910737	0.609640990235285	0.0936078991001085	0.407509223933344
Merged-chr3-28099378-4	chr3	28098866	28099866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 19 of 25)	intron (NM_008875, intron 19 of 25)	115195.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.92386351278378	3.9575623492506	3.75789652059521	4.17881033747862	3.90072177162324	3.8298148982714	0.281193822180885	0.589855178918092	0.877024090368969
Merged-chr12-34688324-2	chr12	34687824	34688824	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-159435.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.25224923367694	3.77009562618877	4.26674502220246	4.1927285088386	4.24912840414084	4.24616886027256	0.328194529537667	0.51625864126484	0.844051513295388
Merged-chr19-10860772-2	chr19	10860272	10861272	+	842.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133804, intron 8 of 10)	intron (NM_133804, intron 8 of 10)	9007.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	2.75520169428275	2.91196997929636	3.06033329071053	2.95597748433679	2.9050735190779	3.13170490416994	0.408071089856646	0.559076297961599	0.864901733108576
Merged-chr18-70640404-2	chr18	70639904	70640904	+	949.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72112.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	2.17584707235518	2.42555273967426	2.32099695079481	2.48304652623599	2.31922846194933	2.52532756515803	0.828807862223079	0.332869332380712	1
Merged-chr14-30125735-2	chr14	30125235	30126235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	103102.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	4.99637205151048	5.19633195475964	4.80248197035805	4.51680792002791	4.73467943180557	4.22576278052516	-1.12193162718303	0.0135594128040066	0.124065495996897
Merged-chr2-38482831-2	chr2	38482331	38483331	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28866.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	7.49598341463255	7.48600106792447	7.50443951284922	7.16069821261035	7.55464293767128	7.31791016033343	-0.195989333694614	0.417399257021526	0.787970785225811
Merged-chr10-115343264-4	chr10	115342776	115343776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359472, intron 6 of 6)	intron (NM_001359472, intron 6 of 6)	18973.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	3.4337727220465	3.3952494939351	3.38383404057141	3.13438981484234	3.40371363165701	3.3994913889846	-0.33201203507256	0.58801606814388	0.876182349656829
Merged-chr4-142077176-1	chr4	142076676	142077676	+	641.5	f0_balb.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-7122.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	6.30005201747256	6.18596874854215	6.27595991310787	7.01368967196053	6.92247479482867	6.35755686141935	0.885585967661984	0.00302804475160989	0.042424237698595
Merged-chr5-91278695-4	chr5	91278208	91279208	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040428, intron 3 of 5)	intron (NR_040428, intron 3 of 5)	4368.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	3.18061946260634	3.17316266880638	2.99142791178199	3.18386284138824	2.8756712263124	3.12578911193025	-0.254490876806651	0.708055961387089	0.923606271223831
Merged-chr1-179760795-4	chr1	179760308	179761308	+	663.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 29 of 35)	B1_Mus1|SINE|Alu	43207.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	3.92787679745136	3.65540424223477	3.58954091953814	3.67518273613461	3.57416044905713	3.76752971869721	-0.232256412024975	0.676629305233699	0.912549881054299
Merged-chr15-64085559-1	chr15	64085059	64086059	+	808.333313	f1_c57bl6.idr	Intergenic	Intergenic	-25111.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.69712013893545	6.45101472979901	6.68571798569888	6.35304716263739	6.36021259460609	6.55040958710532	-0.315141217656612	0.245234730977779	0.642381314494918
Merged-chr9-116171094-2	chr9	116170622	116171622	+	744.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	4241.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.89738077808859	4.10388148168567	4.19615473612687	3.84485254912139	3.87056705749542	4.08594026605226	-0.405282666196117	0.423228759138529	0.791868419997774
Merged-chr14-31406303-4	chr14	31405784	31406784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11393.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.01186677337926	6.85782473107416	6.5020990455849	6.62278401700882	6.32501568733785	6.46845034334771	-0.543531090620363	0.0574605740995509	0.309361336116172
Merged-chr13-102052315-3	chr13	102051899	102052899	+	765.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-284182.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.60854485584279	2.77241558936274	2.69406797453127	2.75071902185591	3.07406196887389	2.95360741362338	1.23654936744626	0.0982831687646379	0.417945822382991
Merged-chr19-5724747-4	chr19	5724239	5725239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	1578.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	6.90934414996202	6.93822575703693	6.94393235130284	7.14461699100922	7.28727946314122	7.21911729587101	0.441283260935307	0.0612000076145334	0.320796915307427
Merged-chr18-53903803-4	chr18	53903248	53904248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	41635.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.5900586479756	6.64236447637296	6.23642474534459	6.92420398197405	6.83515974064724	6.48248103226835	0.404668492024352	0.163108101793097	0.53675692837651
Merged-chr1-74388553-2	chr1	74388053	74389053	+	733.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3056.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	3.99890926118855	3.97602146284094	4.6777087030607	4.1923217795523	4.01408231921512	4.41181825203526	-0.107735309827662	0.841265007798108	0.962909549034125
Merged-chr8-111562620-4	chr8	111562125	111563125	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	24282.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	6.01834180589271	5.75783555589512	5.54180154094855	5.25566777782832	5.04210936483707	5.03682944656923	-1.31521613076118	0.000220925499107795	0.00542905166265842
Merged-chr11-117333221-2	chr11	117332721	117333721	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	908.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.99923213258813	5.01430902307521	5.28849634840741	4.68203200322811	4.35338829981962	4.63442384027655	-1.24555940557799	0.00260427119215626	0.0378178354898671
Merged-chr17-34631019-4	chr17	34630505	34631505	+	682.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030890, exon 2 of 4)	exon (NM_030890, exon 2 of 4)	1319.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	4.75392217351845	4.16041283559417	4.75562852162067	4.90104553777086	4.63512810258043	4.45120368176844	0.22783139461154	0.633343953863713	0.896018020202716
Merged-chr16-36636940-4	chr16	36636447	36637447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MTD|LTR|ERVL-MaLR	29130.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.83226290971755	6.7148687719086	6.64071835797676	6.69080116185074	6.96991692673899	6.71622642898886	0.110743111975214	0.672027073125954	0.910719060610024
Merged-chr11-6415070-2	chr11	6414570	6415570	+	971.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-800.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	6.03182441134378	5.66119431641872	5.94751433613955	5.92253771678288	5.84580486682586	5.78867876883143	-0.0555410489603272	0.859308785065583	0.967267211164924
Merged-chr4-119846237-2	chr4	119845737	119846737	+	805.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	31559.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.27299573238474	3.33541796494942	3.43051052452847	3.54615300647964	3.26517624770592	3.65658484256097	0.558377547962698	0.358794083468398	0.745152579489291
Merged-chr15-100622371-4	chr15	100621869	100622869	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 3 of 3)	intron (NM_001033872, intron 3 of 3)	6707.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	6.30966126801541	5.93118847554256	5.94728901522349	6.10659714019143	6.00010710949049	6.10056056103702	-0.0249538097687405	0.934582912119962	0.985727536128156
Merged-chr8-106153695-2	chr8	106153195	106154195	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	3341.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	7.16989379331033	7.25081924373221	7.14283466539471	7.23816014935365	7.35969145238857	7.17554929716889	0.111216628025236	0.634226128341507	0.896306748317281
Merged-chr2-167942972-4	chr2	167942478	167943478	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10651.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.31054699459516	6.4254143369449	6.203255909726	6.30015380465403	6.07061580114033	6.41936012520979	-0.101800656406946	0.723400430284961	0.929080239793919
Merged-chr7-84688115-4	chr7	84687594	84688594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	-1546.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	6.82647015197363	6.79152164545477	6.65759136745296	6.69103761652006	6.82083161094452	6.78014906506837	0.00121882921011131	0.996132190137333	0.998961028701257
Merged-chr14-7850953-3	chr14	7850455	7851455	+	681.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081427, intron 1 of 45)	RMER5|LTR|ERV1	32998.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	2.78940821692831	3.04600182915138	3.08697402512683	3.03635204378218	2.9539143621163	3.42565767267326	0.750394217923491	0.290919707134803	0.688708829270508
Merged-chr2-166730764-4	chr2	166730258	166731258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16926.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.7846621570183	7.35044223867988	6.61222757542833	7.51586640040186	7.56181883938877	6.93366148276006	0.0417653364498559	0.942001245751344	0.987092317509512
Merged-chr11-116144568-2	chr11	116144068	116145068	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 29 of 30)	intron (NM_172571, intron 29 of 30)	-5700.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	4.09152089572935	4.00599494743515	3.71602210170849	3.49747657474803	3.72060216394881	3.73321318513738	-0.96990393373898	0.0807614174705153	0.376005826953036
Merged-chr1-86215436-4	chr1	86214932	86215932	+	769.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	MTD|LTR|ERVL-MaLR	60652.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	4.45137706202202	4.30564217209937	4.57217975691641	4.16280625606333	3.99041606235456	4.1248457729146	-0.962266847129407	0.0394471735894593	0.246648347714209
Merged-chr7-118533185-8	chr7	118532701	118533701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001304758, exon 1 of 7)	exon (NM_001304758, exon 1 of 7)	155.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	8.99403144526677	9.20790133165825	8.62304141391077	8.90400738725178	9.2915007569788	8.58143700778955	-0.00421931452177904	0.987746940493724	0.997233411338816
Merged-chr13-92986917-3	chr13	92986406	92987406	+	850.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86398.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.21689183528651	3.23991324015191	3.14341194375713	3.83881326446839	4.0690509667055	3.75641744272409	2.65910071999316	3.43902083652882e-05	0.00115664529412243
Merged-chr2-6471244-3	chr2	6470754	6471754	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118518.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.55109491480507	4.39219302227268	3.69276562376107	4.14149845482394	3.83834259852219	3.88752468543946	-0.856069955321437	0.142077704374471	0.503213792431403
Merged-chr6-90496448-1	chr6	90495948	90496948	+	723.0	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33872.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	2.54191178827154	2.58843683246919	2.68377825060389	2.49897541258781	2.19484495195732	2.50846981656387	-1.24909986545974	0.150916271331	1
Merged-chr7-90212953-4	chr7	90212451	90213451	+	933.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52481.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.36558383226563	4.08788395797295	4.51420659864012	4.34195931044747	4.37476000345368	4.41708551993367	0.136025759568332	0.767581579184826	0.942631324765497
Merged-chr4-71489086-4	chr4	71488591	71489591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	711802.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	4.46394554264322	4.93481179765972	4.77985188008446	4.61570378590369	4.72854369494515	4.73090053476834	-0.115141085709291	0.786014092977042	0.948291441179603
Merged-chr8-81375306-4	chr8	81374786	81375786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	32724.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	4.03115361882194	3.98824463145353	4.04668292729589	3.48620213625432	3.71353860060124	3.82722936533988	-1.09444155318704	0.041901482777754	0.256136186991603
Merged-chr1-58586773-2	chr1	58586273	58587273	+	779.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172513)	promoter-TSS (NM_172513)	376.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	6.22603242668036	6.40965821565014	6.27331953442537	6.60677494127981	6.61036376280582	6.29242443012703	0.346868056354516	0.214114155417002	0.607329491867662
Merged-chr4-135236878-4	chr4	135236374	135237374	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35886.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.35444110525393	6.30298645043258	5.89051400451312	5.91694868541115	6.28285360437478	5.87467016655887	-0.268191465085353	0.408224052448159	0.781982251625038
Merged-chr16-4476187-2	chr16	4475687	4476687	+	609.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347162)	TTS (NM_001347162)	46888.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	3.77329519067695	3.23888450702734	3.55504580677069	3.28493551631736	3.33029253481525	3.46473657835274	-0.682765424974804	0.277100967516494	0.674343034039447
Merged-chr12-117560634-4	chr12	117560157	117561157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	44178.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.6658836033701	5.57186301138442	5.53847882632243	6.35793007413244	6.21719985899622	6.07067193625046	1.10404355667761	0.000264942551966858	0.00630587524715628
Merged-chr10-99108151-4	chr10	99107651	99108651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	16.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	5.88983208929721	5.86150315985587	5.79206335425666	5.96327051297565	5.97377812795211	5.87912593989314	0.160920954543981	0.585862412309985	0.875147049575346
Merged-chr11-3931684-1	chr11	3931184	3932184	+	743.0	f0_balb.idr	intron (NM_001130458, intron 1 of 9)	intron (NM_001130458, intron 1 of 9)	277.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	6.10298943046804	5.8995607277167	6.33132826283489	6.11227307189349	6.23532816274025	6.39074698668595	0.226435779960397	0.451334148909749	0.808957790071745
Merged-chr14-37134326-2	chr14	37133826	37134826	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	813.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	6.55349063624078	6.75707570918948	6.36740346233456	6.89671731793536	6.9415881872709	6.54373717028258	0.371705244955153	0.188704446300925	0.574222837446979
Merged-chr3-108210554-4	chr3	108210044	108211044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-17.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	6.6604651747073	6.84746956694262	6.69786289984875	6.84621939817404	6.46043110555991	6.69258720825828	-0.108750661381058	0.68766102772611	0.917193226920892
Merged-chr17-43058017-1	chr17	43057517	43058517	+	903.0	f1_balb.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	41462.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.68933313882946	8.00343555227874	7.41573711704523	6.99674568166603	7.17320268163741	7.0746603676509	-0.953637331959321	0.0002777195796535	0.00653151237529916
Merged-chr8-104342014-2	chr8	104341514	104342514	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	1420.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	5.97311650696424	5.98999262685551	5.98835702058907	5.49709319630719	5.61072983109557	5.81488192582674	-0.619409484257349	0.0446326096121829	0.266336071472354
Merged-chr5-130080107-2	chr5	130079607	130080607	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	B1F1|SINE|Alu	737.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	5.60246184478094	5.44843275720841	5.78484056228824	5.95839210631135	5.64602771017076	5.89405120968298	0.408841349360488	0.211355595576916	0.603905867353298
Merged-chr5-34233107-4	chr5	34232612	34233612	+	719.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 5 of 12)	intron (NM_001015039, intron 5 of 12)	-45402.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	3.96116405409793	3.61607074672155	3.65480587041076	3.46772336994984	3.34836306784574	3.38780797693936	-1.28905200563184	0.0288948550341603	0.203950335839889
Merged-chr15-100227226-4	chr15	100226742	100227742	+	897.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-617.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	7.93611958028676	8.42363748868061	7.80929150321075	8.12641285128961	8.39474561065133	7.76700531860079	0.052848977925932	0.852777320559876	0.965544656676077
Merged-chr2-53011437-3	chr2	53010946	53011946	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	153578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.36333074754827	3.36283299378195	3.51326215378306	3.49980819185724	3.40862960261612	3.58326463378341	0.315948480957482	0.586777214510179	0.875655897836385
Merged-chr12-78227500-6	chr12	78227046	78228046	+	871.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 1 of 23)	intron (NM_172952, intron 1 of 23)	891.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	6.0414777660753	6.0483734310929	5.99535542146592	6.25584493735961	6.24813617786673	6.12457840393039	0.313668020475685	0.264820423392247	0.662692183381616
Merged-chr18-88866645-4	chr18	88866148	88867148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	27559.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.35721901930869	4.59705631075026	4.63652040420333	4.36080389871828	4.38684449621272	4.54506754110961	-0.262041338601303	0.548425991205799	0.85972663155395
Merged-chr4-126541038-4	chr4	126540520	126541520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7562.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	4.7700557409058	4.63950165114604	4.66421590824025	4.65043601322577	4.49151719139647	4.28778749640596	-0.488348022480411	0.255405811187772	0.652536438753136
Merged-chr17-46202708-4	chr17	46202226	46203226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030715)	promoter-TSS (NM_030715)	-101.0	NM_030715	80905.0	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	6.23241452258487	6.40056289379202	6.35715954721594	6.33915406698394	6.34350265526134	6.27987322316323	-0.0128018287860242	0.962394084594417	0.990854599110746
Merged-chr2-112449775-3	chr2	112449274	112450274	+	714.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5251.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	2.63940178981653	2.5641715115576	2.65950794474195	2.43776734779509	2.42956129629989	2.54578434771985	-0.913838815426187	0.245187235907498	1
Merged-chr9-44344001-4	chr9	44343488	44344488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013551, intron 1 of 13)	CpG	240.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	8.08158852751536	7.97659405446249	7.81121631425467	7.9175029244571	7.84578925060951	7.74605146999789	-0.178757415351259	0.418186988493093	0.788535690231447
Merged-chr6-72093352-3	chr6	72092873	72093873	+	914.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4235.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.88302996587935	4.94473455861454	5.08430988793767	5.05427375359467	5.05889518457601	5.24276977669854	0.317832639409789	0.389706100820857	0.769291741623303
Merged-chr16-10384418-3	chr16	10383921	10384921	+	851.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099275, intron 3 of 5)	intron (NM_001099275, intron 3 of 5)	11027.0	NM_001099275	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	3.86908695758532	3.9065120985809	3.88081847425731	3.90580265310723	4.02229067390793	3.68292420722476	0.00766127416501592	0.988324482214506	0.99736007315315
Merged-chr4-49607321-4	chr4	49606824	49607824	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-9448.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	3.31494039014786	3.0957362889694	3.19945144455258	3.18787205142814	3.11134418932946	3.2708857376254	-0.0833802294714179	0.895632801065068	0.975665889379756
Merged-chr7-30121860-4	chr7	30121383	30122383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081007)	promoter-TSS (NM_001081007)	-49.0	NM_001081007	233060.0	Mm.443484	NM_001081007	ENSMUSG00000074220	Zfp382	4930428B01Rik|5930415A09Rik|KS1|Znf382	zinc finger protein 382	protein-coding	6.42120577294299	6.25741689585976	6.12478360639642	6.57938284703881	6.41244815650812	5.74390940288717	0.0456550098910494	0.893621430725026	0.975265071347118
Merged-chr1-107583049-4	chr1	107582542	107583542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6964.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	4.97347848900287	4.92445737679438	5.07685579558514	4.58606778935816	4.59630164805157	4.71262084606834	-0.824187471480475	0.035805402265667	0.23255128083371
Merged-chr12-73613305-4	chr12	73612809	73613809	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	28513.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.08806956161716	4.7448060650564	4.91210406323487	4.9579860186955	4.88750924389646	4.61627175364184	-0.190933624078578	0.638192575367844	0.897399197342002
Merged-chr5-65102833-4	chr5	65102338	65103338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4730.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	5.64312575086739	5.54483891452575	5.31360937393093	5.50016706775217	5.45877045409113	5.67016677974233	0.039693151816352	0.905892989964023	0.978560592879648
Merged-chr17-56938972-4	chr17	56938493	56939493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3605.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	4.84067476913083	4.96071931432262	4.73967820773935	4.6575693627829	4.86843013000533	4.9189692189779	-0.0856532153378038	0.828699357945595	0.9598352930318
Merged-chr7-45525043-4	chr7	45524514	45525514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	1254.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	7.96606654314253	7.78539190435948	7.77562553719847	7.78802136759506	7.95896316750314	8.06221864813231	0.131064277067677	0.557924900398756	0.86443214373182
Merged-chr3-127792362-4	chr3	127791859	127792859	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	1702.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	7.42423993921273	7.21551191981173	6.91230231577389	7.20169670223486	7.57839339069619	7.26409629470082	0.230750895744474	0.395284158188408	0.772628711170802
Merged-chr8-71367483-4	chr8	71366985	71367985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025917, intron 1 of 7)	intron (NM_025917, intron 1 of 7)	268.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	8.41597985208095	8.43656355336595	8.28207716330922	8.50983412798405	8.77689133685477	8.27355909676651	0.22480841068073	0.330874398785078	0.722226411767471
Merged-chr16-91450332-2	chr16	91449832	91450832	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14772.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.18463903398417	2.95321608664217	3.41758073657972	3.64427533324494	3.32130534415656	3.88150521482411	1.6860003982105	0.0129423719588574	0.120554000442473
Merged-chr8-61590087-2	chr8	61589587	61590587	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	1082.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.32900611245433	3.84333112408132	3.9795351827355	3.68291822491336	3.59573465822189	3.84991261964371	-1.14989754345066	0.0361643706268103	0.233950999916784
Merged-chr2-45185439-4	chr2	45184925	45185925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67983.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.36372598902974	5.38773124745557	5.01262187355233	5.15119687400243	5.27602439036692	5.18587997279066	-0.139715938814992	0.700246883758557	0.920919335036368
Merged-chr6-135183225-1	chr6	135182725	135183725	+	749.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5255.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	3.00893192203589	2.89472692081506	2.91014009182067	3.46237691420909	3.91577809279509	3.31722195646661	2.90273150302913	9.70678931238033e-05	0.00276225213784043
Merged-chr9-113725776-4	chr9	113725282	113726282	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15691.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	3.90076035166938	3.30374023054802	3.81346681128333	3.38815293797214	3.3772236570413	3.73744508393776	-0.663402461676963	0.293613460205365	0.690424156263798
Merged-chr19-47138309-4	chr19	47137808	47138808	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133746)	promoter-TSS (NM_133746)	-14.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	7.14090602641464	7.32740840824883	7.30028784926852	7.22931769702933	7.47223260720369	7.35754388008537	0.152683151553904	0.520299364323464	0.846311592349268
Merged-chr1-144243639-4	chr1	144243107	144244107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5497.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.91124342516977	4.94039367652476	4.69359877257128	4.08554410955292	4.03048152717527	4.38346171880728	-1.79385279029533	7.31246235623066e-05	0.00217383125308053
Merged-chr17-10325750-2	chr17	10325250	10326250	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	1148.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.2566205865995	3.48096665421005	3.48257359517087	3.26080099863769	3.21892104322603	3.39217131895492	-0.480017099415199	0.432061311994385	0.797216457194801
Merged-chr16-92415888-4	chr16	92415388	92416388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-15810.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.76918023617251	7.85789990844658	7.63799373264295	7.49427467712762	7.73299184011272	7.60001705294778	-0.211176651024643	0.352916496842298	0.740371789314747
Merged-chr15-78532287-4	chr15	78531769	78532769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2618.0	NM_028331	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	3.47688732437181	3.39158131113842	3.68918630706625	3.72497978899179	3.71833426707043	3.70789032350121	0.705095929420194	0.207744748946521	0.598674450027552
Merged-chr4-86658725-2	chr4	86658225	86659225	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 6 of 7)	intron (NM_007408, intron 6 of 7)	11334.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.6642530540166	3.46995936251849	3.84605558654333	3.46732904127777	3.37151154747953	3.6217162225413	-0.636767070507113	0.275679137377679	0.673222482990106
Merged-chr2-76672609-3	chr2	76672056	76673056	+	758.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355080, intron 1 of 4)	intron (NM_001355080, intron 1 of 4)	542.0	NM_001355079	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	6.6916812643532	6.95245952107858	6.50349084907307	6.80008092963972	6.86224951956837	6.81450683558645	0.13506638768139	0.614611927442562	0.887519163837435
Merged-chr15-59808631-2	chr15	59808131	59809131	+	878.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-13672.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	8.1426691034799	8.01497749325204	7.93112701312404	8.12156785569	8.34927131222954	7.88192099253874	0.147912449802825	0.53005878362269	0.851070276054813
Merged-chr4-55348775-2	chr4	55348275	55349275	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	4.21223640685932	3.80052412666199	3.83680555235282	4.01259280259198	4.10818068253475	4.24507003378718	0.44105269109687	0.394723760256628	0.772514857254462
Merged-chr8-75080489-2	chr8	75079989	75080989	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13129.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.92708518846503	4.05453183649443	4.14092797511455	3.94969574710282	4.08087099766233	4.11757406991755	0.0334456933100121	0.945384909372528	0.987907378883357
Merged-chr4-3574907-4	chr4	3574428	3575428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054089)	promoter-TSS (NM_054089)	49.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	7.29160699864117	7.49490225210808	7.38497798730973	7.56414879349577	7.41563455892483	7.21095675603113	0.0238858147634249	0.921014615311624	0.982480847360633
Merged-chr1-34842920-7	chr1	34842377	34843377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160235, exon 1 of 8)	5' UTR (NM_001160235, exon 1 of 8)	173.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	8.49709618169649	8.26114124476073	7.93392727604481	8.54913206814751	8.28925465388005	8.17648546418006	0.128698481057492	0.608503266168086	0.885006356798728
Merged-chr6-13605463-3	chr6	13604973	13605973	+	903.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	intron (NM_028990, intron 1 of 4)	2625.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	5.59163905180222	5.65093906102441	5.94097344706156	5.53129669171243	5.60572464149262	5.69151103598811	-0.217438086837887	0.503488293056156	0.837052889076112
Merged-chr1-78895466-3	chr1	78894967	78895967	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	78556.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	5.01639306807221	4.83635965873093	4.99646019136555	4.83419194103821	5.03462745092101	4.9909740015646	0.0198788821448755	0.958245190735333	0.990000537228272
Merged-chr1-184083275-3	chr1	184082775	184083775	+	955.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48894.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.76561417731039	3.5595626148826	3.48682871124082	3.22965367585786	3.2920476498971	3.61107449820411	-0.865242896725569	0.157083735837468	0.528046500148035
Merged-chr8-71298694-4	chr8	71298203	71299203	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	L1MB5|LINE|L1	25989.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	5.54445326693618	5.31802876043998	5.27115945112563	4.91409587948088	5.16597519185495	4.69280032142651	-0.885241914749661	0.0244953091853821	0.184519797817968
Merged-chr11-75450915-5	chr11	75450468	75451468	+	853.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	3749.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	2.69612599957174	2.6183609169411	2.68688577119736	2.46196306202908	2.36003264367009	2.63721554696171	-1.09671467376987	0.172006382878505	1
Merged-chr16-91878990-2	chr16	91878490	91879490	+	742.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	B3A|SINE|B2	52640.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.96561277234506	3.96230159283911	4.24195424939271	4.06597002618982	4.07729112971898	4.08508154557488	0.0653463093207824	0.893450549563244	0.975237866709772
Merged-chr18-30088625-4	chr18	30088117	30089117	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184248.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.77671772452224	4.88069206110151	4.79425216315428	3.79538350138151	3.64311459657254	3.75930822419099	-3.28209636063879	1.16256505768481e-09	1.26948442676952e-07
Merged-chr11-100583075-3	chr11	100582577	100583577	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019795, exon 14 of 14)	3' UTR (NM_019795, exon 14 of 14)	7186.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	4.68960221522095	4.90545776628108	5.09472401330846	4.96850703015346	5.13436329790493	5.58046815313049	0.725246653742174	0.0766754248004554	0.36479927456547
Merged-chr7-137421613-3	chr7	137421167	137422167	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10911.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	3.18133325068875	2.97793743162011	3.20537793459863	3.19343933919152	3.3335728359293	3.33288986808682	0.701616620475227	0.272522027392884	0.669758479939364
Merged-chr10-80266577-2	chr10	80266077	80267077	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	1586.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	3.157880076113	3.1047588796459	3.38285314613177	3.11354578152199	2.98590727103184	3.55281956739491	0.0690662070179856	0.919293935939112	0.982011519166154
Merged-chr2-94389189-4	chr2	94388680	94389680	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	17509.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	2.53266713360429	2.42980919795886	2.79839101946336	2.55982657566942	2.56247601017653	2.57142400501591	-0.147243397857529	0.852310330563629	1
Merged-chr13-23535294-4	chr13	23534786	23535786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-132.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	4.9789409354657	4.95304218990283	4.81969231832041	4.95365774390034	5.41461090030481	5.07353823465032	0.529036940940093	0.174904933556978	0.554587672868266
Merged-chr16-33923959-2	chr16	33923459	33924459	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43079.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.32060348445883	5.23312826234229	5.52764308413929	5.0515814763473	5.03527840877635	5.14479143100289	-0.57956367830468	0.104797878106094	0.431983644181703
Merged-chr10-79958941-2	chr10	79958442	79959442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1210.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	4.38234861041356	4.16746321657384	4.41529381445578	4.46203885294813	4.51921207490956	4.75468753342222	0.651445656330565	0.142343935498272	0.503715686878622
Merged-chr10-36975267-2	chr10	36974767	36975767	+	847.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008229, intron 1 of 13)	intron (NM_008229, intron 1 of 13)	723.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	5.2729716568715	5.30710735381662	5.59620550116664	5.31849225523789	5.4555977679276	5.14554071486786	-0.130247449903924	0.715121075115627	0.926295780806461
Merged-chr1-131345596-1	chr1	131345096	131346096	+	787.25	f0_balb.idr	intron (NM_001081011, intron 9 of 22)	intron (NM_001081011, intron 9 of 22)	-66033.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.05694459081529	3.14272017411099	2.98185416814857	3.00960437353776	2.89146590685515	3.39025423031887	0.188664323550063	0.78662351432774	0.948530822116986
Merged-chr5-8349737-4	chr5	8349216	8350216	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	18444.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	5.2290643436085	5.07988577010317	4.89410433207915	4.86456330297465	4.73357243741593	4.9597948906015	-0.513673651732976	0.183138264379607	0.566110657076039
Merged-chr5-150665035-3	chr5	150664567	150665567	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 1 of 7)	intron (NM_001362416, intron 1 of 7)	545.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	7.42758637680886	7.74567848257836	7.38893596471312	7.73865017003498	7.83345519315208	7.63028479499241	0.294594644169035	0.218883452372589	0.613128894826908
Merged-chr19-6294341-2	chr19	6293841	6294841	+	634.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010119, exon 3 of 5)	exon (NM_010119, exon 3 of 5)	-12116.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	6.76053857063221	6.38925062231572	6.7222136370413	6.19668343123813	6.43175856170635	6.25159423519601	-0.529720485188188	0.0647935000420454	0.331850283237962
Merged-chr1-161077383-3	chr1	161076856	161077856	+	986.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131030, intron 2 of 4)	ORR1A3|LTR|ERVL-MaLR	6589.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	4.80323610552872	4.78132722398584	4.92415544120694	5.3879074183189	5.33713892069919	5.23224725207603	1.0405676147924	0.00410163731746067	0.0529212339760068
Merged-chr11-95829828-2	chr11	95829328	95830328	+	793.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163464)	TTS (NM_001163464)	5328.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.02867433963642	4.05609486364273	4.48286730901269	4.31099389580378	4.37637734373915	4.54842632460843	0.583375719093036	0.222990713246762	0.617835308211147
Merged-chr2-80315094-4	chr2	80314578	80315578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	-388.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	6.39218678348032	6.67857071698866	6.20194817299507	6.49304904453489	6.44115540755164	6.7017765020578	0.149450402923861	0.607071579453538	0.884443331346103
Merged-chr4-134526402-4	chr4	134525894	134526894	+	851.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029759, exon 7 of 7)	3' UTR (NM_029759, exon 7 of 7)	8702.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	4.11374160778543	3.72563958018	3.9989851986153	4.33922276981121	4.11262307206031	3.96774773234321	0.570851869298134	0.270605074260978	0.667629387731657
Merged-chr15-41751619-4	chr15	41751056	41752056	+	741.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-37439.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.2331720274201	4.42082983229952	4.53158497185711	3.80476896903432	3.7570442477163	4.44404915917691	-1.01855744445998	0.0609720370676615	0.319944583485273
Merged-chr13-60667620-2	chr13	60667120	60668120	+	719.357178	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	65409.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.59512201199136	4.95299076348756	5.34528139021838	4.68698432286556	4.55803477355558	4.88719269317559	-0.627231729493163	0.15863306133586	0.530435761526001
Merged-chr8-47939981-4	chr8	47939507	47940507	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	50544.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.48194566473075	4.37411978208372	4.41366020676765	4.46007307132438	4.4302964071745	4.52290677284759	0.111405417575133	0.794969734283529	0.950960215791829
Merged-chr18-67641487-4	chr18	67640977	67641977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134138)	promoter-TSS (NM_134138)	-122.0	NM_001081073	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	7.04243421808298	7.02599701190431	6.98650483471165	7.02031619085002	6.71034701822941	7.24070619474812	-0.0332273532861181	0.900877359695239	0.977011148343692
Merged-chr2-167766568-2	chr2	167766068	167767068	+	851.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75391.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.43080168615322	4.47147615649612	4.54691653591487	4.31743792994668	4.46782375998292	4.53219695133399	-0.101813015905912	0.813289023744015	0.955940138311315
Merged-chr13-99323850-4	chr13	99323363	99324363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20815.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.56729161756694	6.48141948633955	6.18970047797479	6.50576822960042	6.64794323787743	6.03842136573657	0.0104432388903748	0.973380116585607	0.994035429262205
Merged-chr5-8058267-3	chr5	8057773	8058773	+	861.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080974, intron 2 of 7)	intron (NM_001080974, intron 2 of 7)	1731.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	2.5216320077051	2.58391160081757	2.88428766056286	2.58646751037235	2.47533584501552	2.59936663639272	-0.648620061322796	0.410126709398621	1
Merged-chr10-86727810-4	chr10	86727324	86728324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 4 of 15)	intron (NM_001003910, intron 4 of 15)	15059.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	5.22365630916757	5.53285676444087	5.65972343441945	5.35774050565722	5.43632018758714	5.61823463923265	-0.0148011183683331	0.966239773828441	0.992284576568462
Merged-chr11-82571237-2	chr11	82570737	82571737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62116.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	7.12454365276881	6.82052763280134	7.08256406205594	7.35821127791145	7.47509555208599	7.10144495860881	0.473919251140325	0.0650627191385084	0.332682279486082
Merged-chr13-34792775-4	chr13	34792281	34793281	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53139.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	6.7122703793181	7.03526271222536	6.23723748353371	6.27500303182196	6.52928641379504	5.7211378716436	-0.770709913792552	0.0375640810223072	0.239582528412796
Merged-chr1-130716812-7	chr1	130716280	130717280	+	848.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-547.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	7.34160622751143	7.60369885361342	7.49042270161456	7.45357089283788	7.72078953650766	7.35527991617952	0.0646568581475904	0.791830903247547	0.94981786289531
Merged-chr8-70655274-1	chr8	70654774	70655774	+	792.0	f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	4464.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	2.78475013249861	2.63796450536767	3.01777633227152	2.99952701459795	2.8107232127788	3.14545569015056	0.828851657427496	0.260415656926691	0.657803047902843
Merged-chr8-85503216-2	chr8	85502716	85503716	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10599.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.18614749536956	5.28671511509613	4.82631725173277	5.23765529227989	5.12540707674517	5.01171309798754	0.00779293757249968	0.983753260067616	0.996435029808107
Merged-chr11-82036077-3	chr11	82035561	82036561	+	683.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011333, intron 1 of 2)	intron (NM_011333, intron 1 of 2)	484.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	5.15338886846519	4.95806314507076	4.95698240125521	5.2874931813635	5.2095121189719	5.23076819291203	0.439465261586906	0.222479404539977	0.617451713343938
Merged-chr19-8965268-1	chr19	8964768	8965768	+	585.0	f1_c57bl6.idr	exon (NM_197993, exon 9 of 9)	exon (NM_197993, exon 9 of 9)	-1773.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	3.71710350664008	3.8160551962749	3.923581908511	3.95279080286118	3.62019560020145	3.79430171258738	-0.0801485024875842	0.881251545623585	0.972635980891511
Merged-chr2-18998248-4	chr2	18997752	18998752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355149)	promoter-TSS (NM_001355149)	-67.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	6.56810866651791	6.74788624769328	6.65644974149347	6.50581987547915	6.59050485272409	6.74634763163823	-0.0757311471724414	0.772066883345548	0.943680976839558
Merged-chr11-21549958-4	chr11	21549462	21550462	+	983.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21972.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	5.93079285362132	5.83294994673386	5.33179474917985	6.06929752317279	5.91072155768171	5.87104589658802	0.379942450131594	0.264321974418659	0.662221571944713
Merged-chr7-80065509-3	chr7	80065014	80066014	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	9743.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	6.22524094766838	6.28446556781557	6.41974481119972	5.74638688191838	5.72538934397048	5.5124787112688	-1.10065084003521	0.000281595092652868	0.00660585409344794
Merged-chr19-43801639-4	chr19	43801135	43802135	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013806, intron 7 of 31)	intron (NM_013806, intron 7 of 31)	19327.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	3.80710741908073	3.6657193921745	3.76029815168354	3.68608902446141	3.58417255864864	3.77920829576007	-0.220779402399917	0.681857940563	0.914901722830768
Merged-chr7-96947321-2	chr7	96946821	96947821	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	-4206.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	2.79952507005025	2.87124125563899	3.06384268450533	2.76431647723451	2.67556703264255	2.78443135464865	-0.885975246196422	0.222296593019597	0.617225566059783
Merged-chr14-51844107-4	chr14	51843593	51844593	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_053111	93719.0	Mm.221324	NM_053111	ENSMUSG00000062148	Ear6	-	eosinophil-associated, ribonuclease A family, member 6	protein-coding	2.83796784426865	2.91496114950488	2.97431846566469	2.88470928658089	2.80165647773668	3.10304312983081	0.101391644873949	0.884512844522283	0.973510728214101
Merged-chr6-121224570-3	chr6	121224105	121225105	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13871.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	4.73512416809488	4.70953783985657	4.69984293736969	5.02589035862724	4.8693526337919	4.95572182291848	0.525204645520991	0.173900303907051	0.553140727918843
Merged-chr15-82118898-4	chr15	82118411	82119411	+	863.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 26 of 30)	RLTR22_Mur|LTR|ERVK	-9011.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	2.58043603395741	2.37676361255085	2.40632899208503	2.53982878026389	2.72993173654057	2.67603558966072	1.1280950183093	0.163981734938568	1
Merged-chr4-150092047-2	chr4	150091547	150092547	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	4544.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	3.18158858396854	3.14741296086315	3.14103092782192	2.90071255907784	2.98272740644286	2.97533563249418	-0.93507577180016	0.16149591159612	0.534459252156486
Merged-chr5-115477618-2	chr5	115477098	115478098	+	659.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001167691)	TTS (NM_001167691)	6699.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	1.71030080250154	1.6803327333539	1.86705773292643	1.6572093572801	1.44333742457817	1.52333234317555	-2.3924261373962	0.0568232933961967	1
Merged-chr16-16072800-2	chr16	16072300	16073300	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	74051.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	5.97382288700564	6.53112346543979	5.92662980993588	5.731099951239	6.27199845785063	6.01257074007207	-0.259270776644953	0.461932705364782	0.815107818354545
Merged-chr1-191069439-3	chr1	191068941	191069941	+	917.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	6420.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	4.73177391258185	3.98614738027446	4.7109019362557	6.37205426101821	6.55168446320412	5.88281062985644	3.59742719954661	4.55375615364432e-05	0.00145846398010946
Merged-chr17-84352744-4	chr17	84352230	84353230	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	113478.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	3.75086568627233	3.25788913465853	3.62617289080401	3.47161999331695	3.27585888524473	3.42832677284855	-0.626345622378283	0.313296163533202	0.707890553852582
Merged-chr18-75503553-4	chr18	75503074	75504074	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11071.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	6.86855882101296	6.97648642598627	7.36266002064414	7.14202459110889	7.20674641392721	7.50823282867347	0.318453164335259	0.24224473586636	0.639326946903326
Merged-chr6-50566606-4	chr6	50566088	50567088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015581)	promoter-TSS (NR_015581)	-55.0	NR_027892	73183.0	Mm.430720	NR_015581	ENSMUSG00000085776	5430402O13Rik	3110047M22Rik	RIKEN cDNA 5430402O13 gene	ncRNA	7.74258148739396	8.05455390040131	7.80176223552611	7.97634532821761	7.84416463032614	7.78133024448183	-0.00803989483506619	0.971934685516218	0.993864490395142
Merged-chr18-67825458-4	chr18	67824951	67825951	+	807.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	MIRb|SINE|MIR	25344.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	4.09410966080987	4.26628978854553	4.41017859681145	4.55552587633969	4.88062783371867	4.86486799934348	1.29911981925914	0.00343251452915927	0.0465582531103149
Merged-chr11-23823843-2	chr11	23823343	23824343	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52873.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	4.87371264313196	4.77417190815804	5.01599925825196	4.81962145903536	4.86713990351457	5.20658417691853	0.176811109097177	0.654417486384889	0.903779343778232
Merged-chr17-73031322-3	chr17	73030840	73031840	+	933.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-76645.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	2.79363694738802	2.61181784425568	3.02443849406995	3.12293623825379	2.9209112894242	2.97966204095589	0.953049872930832	0.195907632544339	0.583652434941867
Merged-chr13-113592930-4	chr13	113592429	113593429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130796, exon 2 of 2)	3' UTR (NM_130796, exon 2 of 2)	25635.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.72953211903425	6.01897917515157	6.14785335527979	6.11557714323541	6.00496001715392	6.12494838368871	0.190575107736214	0.531764699548795	0.851792887243639
Merged-chr17-34894363-4	chr17	34893887	34894887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198886)	promoter-TSS (NM_198886)	-172.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	6.51212443298175	6.33417407720724	6.60264092617724	6.53380745226572	6.32002264205424	6.23666875706777	-0.177529740993421	0.525596008955904	0.849067964456062
Merged-chr16-4722327-4	chr16	4721845	4722845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2989.0	NM_001290761	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	7.15731463316933	7.12356622764884	7.39526131132293	7.44991096374542	7.76243959034688	7.6551049921437	0.599630054352806	0.0132319531128613	0.122211605573866
Merged-chr7-35036668-2	chr7	35036168	35037168	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	19898.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.16209722148675	4.36930319384841	4.26788892205365	4.10382284078821	4.00876081774727	4.46005096005301	-0.210882676251243	0.663696839504175	0.907297356021587
Merged-chr11-60780005-2	chr11	60779505	60780505	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	2480.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	4.49848569629972	4.27252239311828	4.47470671958103	4.50536300294688	4.36804548031658	4.73262070626551	0.298461195890765	0.50241969761276	0.836508287957471
Merged-chr11-97022025-4	chr11	97021574	97022574	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	4344.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	3.77775570538463	3.65957885015184	3.82502102256527	3.65512370299639	3.46327249185861	3.64014045248846	-0.58294256217538	0.290425564118203	0.688207846988308
Merged-chr6-97483814-2	chr6	97483326	97484326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	ORR1E|LTR|ERVL-MaLR	3994.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.87958424439694	5.60298379907504	5.90429904996197	6.34682024746753	6.42674755286294	6.66609714772578	1.16170518071249	0.000108424090469337	0.00303558267825457
Merged-chr6-86577654-2	chr6	86577154	86578154	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50253.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	2.70619909430528	2.81953002336321	3.15482517486201	2.89950858649861	3.18746131633109	3.22591263161371	0.967372654032368	0.187163291588776	0.572128204607461
Merged-chr9-109875435-4	chr9	109874925	109875925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007658)	promoter-TSS (NM_007658)	-154.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	6.07557430949179	6.19645555677452	5.95122209767132	6.01175297396222	5.65700511993146	5.94110204545867	-0.37327993569165	0.227109390665767	0.622213514105616
Merged-chr17-65765161-4	chr17	65764654	65765654	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	7598.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.04878914777654	4.78048755436544	5.0351328283693	6.26757608780134	6.40643585935106	5.99474969548764	2.42897115730424	1.74032166654493e-12	3.18961861739803e-10
Merged-chr10-71369619-4	chr10	71369103	71370103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 3 of 5)	intron (NM_027184, intron 3 of 5)	21840.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.89409778218561	6.12663155743717	5.93107001567641	5.72787606277366	5.75617631056656	5.2648199085918	-0.668787109290822	0.0482098298213245	0.278379147798249
Merged-chr9-123112135-2	chr9	123111635	123112635	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026917, intron 1 of 6)	RLTR25B|LTR|ERVK	1070.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	4.23990995988223	4.5238456215474	4.60763390112828	4.4534080533777	4.45370217153569	4.33867962748375	-0.103078715065979	0.817593881306419	0.956767881392089
Merged-chr5-23132455-3	chr5	23131955	23132955	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	RLTR11B|LTR|ERVK	301898.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	2.82283154221187	3.04715363618198	3.0355711507687	2.69024134025993	2.66913901075743	2.87389170496983	-1.18089301624522	0.107729214008211	0.438442148956602
Merged-chr17-26468246-2	chr17	26467746	26468746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40226.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.83921832321487	3.62989597533656	3.76787783943474	3.38556582147897	2.93271562783252	3.58457321330413	-1.57863440036819	0.0250257369534186	0.187075871028664
Merged-chr13-37333546-4	chr13	37333002	37334002	+	912.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11843.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.55207457107621	5.61350264542085	5.79972116085161	5.76410937929342	5.88117362824423	5.90870395525418	0.365707628956348	0.239269801362159	0.636064439885572
Merged-chr19-32186644-4	chr19	32186149	32187149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24364.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.80137414943196	5.97949140478682	5.58520722918139	4.96771300348123	4.93623572078012	4.95229529720893	-1.69485881494699	1.60362752760812e-06	8.17614211502551e-05
Merged-chr11-97797144-2	chr11	97796644	97797644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2421.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	2.6095654293607	2.77693225641364	2.93441997378278	2.6389296713532	2.55640384273329	2.51522753765523	-1.13725466837321	0.146881401102563	1
Merged-chr14-61801270-2	chr14	61800770	61801770	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118897.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.60438444684301	5.56578289724529	5.5312112833642	5.55689891427955	5.94301316371082	5.65078833277326	0.312672024779437	0.341690647752256	0.730935106878357
Merged-chr13-65019009-4	chr13	65018502	65019502	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14056.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	5.5624067549682	5.66965980641597	5.55424910481613	5.91601427799633	6.17708856371391	5.25294124061367	0.463103667346683	0.223741590487265	0.618510481017847
Merged-chr12-85368318-2	chr12	85367818	85368818	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	6399.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.36295115778384	4.30168199317341	4.65941095810192	4.50714930829097	4.61621939370729	4.99887062538073	0.667451387121834	0.138028044147068	0.496554870743337
Merged-chr1-131438351-1	chr1	131437851	131438851	+	575.0	f0_balb.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	89010.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.70432068422002	6.26992573478627	6.20905008566613	6.38799310601857	6.71716679158866	6.41278593189105	0.161888362644682	0.595921295083919	0.879748615455831
Merged-chr5-20967997-4	chr5	20967476	20968476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16154.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	4.50681718601257	4.58071725873831	4.79218567246318	5.04459625406725	5.11673392855474	4.6992445857315	0.804880195007053	0.0502645678061013	0.285339259852936
Merged-chr13-68582608-1	chr13	68582108	68583108	+	1000.0	f1_balb.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	398.0	NR_138478	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	4.99952058671424	5.47907903001529	5.21365884163412	5.5827482167921	5.7771123817186	5.34539142729232	0.655930110461519	0.0777434657743556	0.368051399665556
Merged-chr13-98818379-2	chr13	98817879	98818879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2930.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.87710631799646	4.71194213434948	4.85763197996042	5.04903959893823	4.7558441646856	4.76975735013913	0.113305148735579	0.775378770810238	0.9446501619605
Merged-chr10-61694993-1	chr10	61694493	61695493	+	568.5	f0_c57.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-521.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	6.37373569332278	6.33341506531641	6.04835539368854	6.30056094860579	6.50118005396391	6.17832668917213	0.122389343442775	0.675429332162433	0.912155652131913
Merged-chr11-117782311-4	chr11	117781821	117782821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	24.0	NM_001195089	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	8.32589479338008	8.28851195947445	8.08439164524083	8.21020412318325	8.43551821532087	8.18832054289237	0.064863617733628	0.767202462441532	0.942573703853445
Merged-chr4-86898928-4	chr4	86898437	86899437	+	781.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24523.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	4.12037216802	3.74520094708991	4.1176749635555	3.72059306019264	3.23289885671541	3.6522184770403	-1.52839129184607	0.0124804077258997	0.117500539268688
Merged-chr12-100520464-4	chr12	100519946	100520946	+	887.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	CpG	376.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.6223724740767	5.40919178599533	5.17451557025722	5.34435077910778	5.00258343446046	4.67487511703565	-0.759999750637512	0.0646510433707303	0.331330624340461
Merged-chr9-22085478-4	chr9	22084972	22085972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253898)	promoter-TSS (NM_001253898)	-45.0	NM_001253897	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	7.04727427263537	7.35737727510089	6.96111092503994	7.34521336356949	7.47603995526553	7.00504151930289	0.237704802184761	0.380397116748096	0.762534569734688
Merged-chr15-79354818-4	chr15	79354312	79355312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	6410.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	4.59585665716992	4.41175342248711	4.34204977834864	4.84007742382492	4.72748331076825	4.36396392183064	0.505919911199694	0.256945048908608	0.654119125886107
Merged-chr14-25465259-2	chr14	25464759	25465759	+	861.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	6074.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.02043969453879	2.96582029251877	3.02721934111163	2.96781124130441	2.71724590865509	2.79291558486308	-0.864798772606981	0.22341140064073	0.618088037788066
Merged-chr2-59343793-2	chr2	59343293	59344293	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	42889.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.62623025589776	4.84169128030685	4.8674200425832	4.73915283054916	4.67572240457533	4.66631167981157	-0.196998802740314	0.624029949148128	0.891775603426165
Merged-chr17-5593362-2	chr17	5592862	5593862	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MTD|LTR|ERVL-MaLR	100762.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.00272028925098	6.69525412809979	6.94007447093508	6.42358111805154	6.43742822768167	6.72637664547425	-0.561226492633592	0.0389288132831645	0.244675854270076
Merged-chr8-3648520-4	chr8	3648016	3649016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7254.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	4.42472269941105	5.05858701590187	5.22795792223528	4.73129097631098	4.74147169573807	5.01191742180267	-0.249962200073904	0.582878783416055	0.873826743013405
Merged-chr16-70333278-2	chr16	70332787	70333787	+	618.0	f0_c57.idr|f1_balb.idr	intron (NM_028803, intron 1 of 15)	AT_rich|Low_complexity|Low_complexity	19338.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.44590175631778	2.6943366023397	2.46641626228252	2.88504631969751	2.8366742141547	2.92874122259915	1.86884647808309	0.0231444079533115	0.177886559853976
Merged-chr1-171247210-4	chr1	171246714	171247714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-92.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	7.24833680261056	7.17686363414192	7.3186543169259	6.99386677417337	7.16978461613276	7.11845885625127	-0.2224020375531	0.346695908982796	0.734827887173073
Merged-chr11-106703316-2	chr11	106702816	106703816	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	11965.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.74413991009255	4.72454700385311	4.66979761892335	4.63902139066453	4.45015761763078	4.69646575712305	-0.299003822851965	0.466606590496502	0.817586753758551
Merged-chr6-108618361-1	chr6	108617861	108618861	+	977.0	f0_balb.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	4806.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.40611375358256	3.75160660490438	3.56854974295577	3.33623145058434	3.11844116690199	3.18176270709208	-1.4712865496697	0.0204047653681111	0.163571499861469
Merged-chr10-88201151-4	chr10	88200663	88201663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	66.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	7.7031866480075	7.92505935556151	7.38396187009927	7.52208942188342	7.54840586065384	7.0167958366248	-0.440382292804112	0.116674100164209	0.456148969903845
Merged-chr7-27543647-2	chr7	27543147	27544147	+	814.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 2 of 13)	intron (NM_001317355, intron 2 of 13)	9571.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	4.23046409175553	4.27953220398481	3.83761274042815	4.11774725766982	4.35550218448192	4.35486915096583	0.380943623922328	0.448170897721843	0.807085901041859
Merged-chr19-17277110-2	chr19	17276576	17277576	+	905.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	62429.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.98986306573981	4.26037381499488	4.43479572983178	6.51770625961476	6.7961846688929	6.49364170306612	5.5040039678311	8.11604169338437e-27	1.87588777006424e-23
Merged-chr19-6911088-2	chr19	6910588	6911588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-982.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	6.17925527150503	6.01476710360923	6.27989657164815	6.16221781184736	6.3875204401256	6.37750950424058	0.264869176164504	0.354177250519108	0.741374573248319
Merged-chr5-110810184-4	chr5	110809705	110810705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-124.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	7.05274473047452	6.61006862129501	6.7925435871297	7.04787381002276	6.36603061869519	6.6266878140191	-0.189506213094563	0.544327083423911	0.85765692399006
Merged-chr6-145709993-4	chr6	145709442	145710442	+	878.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93979.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	4.923832033985	5.25141893951358	4.58923793786889	4.09193186057519	4.10273537334147	4.18515753194158	-2.11374878388642	7.71787424753044e-06	0.000319655988247144
Merged-chr19-6477189-3	chr19	6476696	6477696	+	721.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	58458.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	4.33451189564105	4.30879394376102	4.17333365324371	4.29136996677962	4.400118594018	4.70080632045174	0.486657051152411	0.289176704733816	0.686695640624754
Merged-chr9-63399268-4	chr9	63398766	63399766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027090)	promoter-TSS (NM_027090)	-22.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	7.99150616633766	8.15583442925358	7.93072684419667	8.32516251745291	8.30735566875618	7.57643681779673	0.129520432564652	0.639138397109797	0.897935351850988
Merged-chr5-125189031-4	chr5	125188540	125189540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-9826.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.34908412912554	4.10001716742149	3.8847096379181	4.00565270129477	3.96401438210918	3.84763684385666	-0.555380850267985	0.281257302933979	0.679387396944016
Merged-chr8-116993582-4	chr8	116993055	116994055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026572)	promoter-TSS (NM_026572)	-106.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	6.15912692351412	6.33701992889829	6.33369006652755	6.22569300062691	6.20415393325963	6.10586724005986	-0.156911782623891	0.574212428009716	0.87055929750801
Merged-chr6-72892823-2	chr6	72892323	72893323	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	B2_Mm2|SINE|B2	6469.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	2.20440057764344	2.00375036246174	2.23646109383727	1.9707168064365	1.970959241459	1.97836538870737	-1.41463331283707	0.140028550578871	1
Merged-chr18-60373335-3	chr18	60372807	60373807	+	844.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021792)	promoter-TSS (NM_021792)	-309.0	NM_021792	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	3.73922121157505	4.09765709295019	3.76494774331903	4.0990654207673	3.97698180119966	4.43352356837632	0.848579848199568	0.114987546577408	0.452681859179267
Merged-chr17-35065566-2	chr17	35065066	35066066	+	827.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_001462)	TTS (NR_001462)	618.0	NM_001033221	106722.0	Mm.390956	NM_001033221	ENSMUSG00000073414	Mpig6b	AU023871|C6orf25|G6b|Ng31	megakaryocyte and platelet inhibitory receptor G6b	protein-coding	3.41607934330226	3.35202721301583	3.4922199531336	3.30561200486934	3.18407599981438	3.03934914401438	-0.950094687465254	0.136434034750754	0.493475468965041
Merged-chr1-86432590-2	chr1	86432090	86433090	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	6261.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.40171863827574	3.15338685897343	3.39895057719731	3.0877630821214	3.03627505591817	3.36282222182072	-0.659061201450708	0.311664848632288	0.706631105711982
Merged-chr14-73552803-4	chr14	73552298	73553298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361638)	promoter-TSS (NM_001361638)	12.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	5.56332323302569	5.47878318410508	5.60888297844361	5.80119972475045	5.12461222435683	5.2475415796924	-0.23050401113043	0.541635487788995	0.856879077002901
Merged-chr13-113271444-4	chr13	113270988	113271988	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	61829.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	5.2968645715944	5.13278976246083	5.11865126328808	5.42681791121232	5.26399816267242	5.11309483913492	0.18316923832212	0.608744612353164	0.885006495769744
Merged-chr15-3234301-4	chr15	3233735	3234735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-36532.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	4.66168435488472	4.44672389641874	4.51980874049777	4.28863230559042	3.96272829727975	4.62502431080806	-0.613934273202407	0.207843445897327	0.59868364609575
Merged-chr5-24750459-2	chr5	24749959	24750959	+	951.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153076)	TTS (NM_153076)	7384.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	3.38373582306958	3.00546253421912	3.22215413506938	3.02470693169761	3.17240757448457	3.11945641088777	-0.447107429459656	0.502464312691899	0.836517047394126
Merged-chr16-91870393-4	chr16	91869882	91870882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	61248.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.69297939294399	7.44525018597461	7.26825085506475	7.34889610159609	7.38378278984803	6.71813510037901	-0.426367645866784	0.145473096611306	0.508657621668007
Merged-chr5-30839990-4	chr5	30839495	30840495	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-21812.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.79596759682541	4.6043903922818	4.46232106799879	4.58723610019501	4.48724511366831	4.19344381148549	-0.473112123473262	0.294308438735511	0.691009769579071
Merged-chr11-103969813-2	chr11	103969313	103970313	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 2 of 4)	intron (NM_007477, intron 2 of 4)	2942.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	3.67923403772744	3.36351824280016	3.69322991618298	3.45167208348633	3.3913455456955	3.38951339279831	-0.635109533307259	0.284811496891591	0.682457480121006
Merged-chr7-16296172-2	chr7	16295672	16296672	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9377.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	6.2422699053891	5.97590769490921	5.94072980001255	6.62756815982597	6.77421677834023	6.41906644188541	0.914538744348438	0.00168546374761825	0.027074144307301
Merged-chr6-90428540-4	chr6	90428121	90429121	+	905.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173775)	promoter-TSS (NM_173775)	-141.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	2.73171028174933	2.70999420491413	2.83832938110462	2.5498465689168	2.42851531702518	2.47242329874574	-1.65664998224404	0.0392266399155369	1
Merged-chr14-50820248-3	chr14	50819754	50820754	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 13 of 15)	intron (NM_009632, intron 13 of 15)	12338.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.11960032698166	4.42124504324311	4.69988217259559	6.42780277929947	6.82164881321284	6.26516192382793	4.46461905310466	2.89834859789581e-24	4.30653196667348e-21
Merged-chr11-49081570-2	chr11	49081070	49082070	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	4983.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	5.80096435823156	6.32233083139189	5.77383944175351	6.49054216104006	6.55250372739123	6.28845963800851	0.747578091554214	0.0206521617582935	0.164805320378257
Merged-chr19-34515935-4	chr19	34515436	34516436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	11538.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	8.05364593490608	7.98203305270549	7.71267244122268	7.84724071673615	8.15133319380545	8.05847609645005	0.137327026192473	0.556287876201702	0.86357390983939
Merged-chr16-3745735-1	chr16	3745235	3746235	+	555.0	f0_balb.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	1636.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	4.74052931297134	4.9173367587439	4.98727836124222	4.98619357250894	4.76325751820589	4.87328164443322	-0.0153397197888478	0.968641064238722	0.992811398801848
Merged-chr19-5424945-4	chr19	5424460	5425460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	19.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	7.0632539292227	6.56448159705095	6.84901865649297	7.2446474504618	6.96158453629878	6.70244819387829	0.233040094182549	0.426607549069729	0.793840707522572
Merged-chr19-25138364-4	chr19	25137840	25138840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	B1_Mur2|SINE|Alu	-98635.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	6.16843053990435	5.99359360413047	5.95377708487996	6.6159361508367	6.61066340976223	6.46111727498101	0.861002022007266	0.001938097463146	0.0301938239493451
Merged-chr2-59397704-4	chr2	59397214	59398214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-11032.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.14905304350373	4.32865691506558	4.62784312043903	4.27672610346502	4.03811759487948	4.05670798813086	-0.668645912071546	0.171539246101695	0.5496760345681
Merged-chr18-4239669-4	chr18	4239166	4240166	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73834.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.76573399843296	4.68713463944619	4.71366525125611	5.10143764642632	4.76527059652928	5.10395670316083	0.598700954942755	0.133133387644272	0.488179222594067
Merged-chr8-13338687-4	chr8	13338185	13339185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291766)	promoter-TSS (NM_001291766)	-66.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	5.94230819655893	5.70885195007391	5.72615866181637	6.38674756628551	5.19173790370586	5.59242286247242	0.0609664081295262	0.886638155724138	0.973794308941933
Merged-chr1-33813361-4	chr1	33812867	33813867	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 2 of 13)	intron (NM_001359274, intron 2 of 13)	1228.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	4.73831431571231	4.78988144222892	4.02838515484989	4.50372077109597	4.36631532063373	4.40927153202604	-0.359984298232788	0.47402073429428	0.821247104271739
Merged-chr2-29827812-4	chr2	29827307	29828307	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026615, intron 1 of 4)	intron (NM_026615, intron 1 of 4)	418.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	6.46638992210998	6.3408078815428	7.00976419043263	6.86856012014977	6.72102303284048	6.73695382214973	0.235729391459604	0.432997000579576	0.79758551656855
Merged-chr6-124900494-2	chr6	124899994	124900994	+	920.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11211.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	5.25124651871312	4.81026995340439	4.83942821346115	5.03763790912639	4.90795420810879	4.74418773442873	-0.181019937232363	0.657050627415874	0.904749338441592
Merged-chr2-84467619-3	chr2	84467111	84468111	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	MLT1B|LTR|ERVL-MaLR	6563.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	3.13585472379484	3.1558070119989	3.44923259887793	3.40001127776713	3.41403784383384	3.67031723414228	0.97299303673395	0.118398195340195	0.459800104446324
Merged-chr12-110891745-2	chr12	110891245	110892245	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289510, intron 1 of 19)	B1F2|SINE|Alu	2481.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	3.07303317383336	3.18973239439218	3.15608300191283	3.18741756667176	2.91046599912197	3.33862234644981	0.0420971729417847	0.949921367011791	0.988334422516281
Merged-chr7-82867843-4	chr7	82867399	82868399	+	866.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175366, exon 1 of 2)	exon (NM_175366, exon 1 of 2)	566.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	3.77257218865079	3.68000513289445	3.8623792497833	4.51524770732174	4.27542579507514	4.36205134042748	1.83161695924929	0.000251771510501365	0.00604425962083024
Merged-chr2-37484368-4	chr2	37483869	37484869	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033960, intron 6 of 18)	MTC|LTR|ERVL-MaLR	32115.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	3.28689452498944	3.31315447885077	3.37510166200806	3.30241171735998	3.41571282144344	3.39070287703342	0.191019364813311	0.748810346520956	0.937087780077821
Merged-chr11-114914253-2	chr11	114913753	114914753	+	803.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20133.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.65234223984974	6.54676677910476	6.86882916414496	6.47702973329797	6.62550287852804	6.55777759227322	-0.207322350731905	0.437130728212215	0.79976715856888
Merged-chr9-109055628-3	chr9	109055078	109056078	+	895.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026381, intron 1 of 3)	intron (NM_026381, intron 1 of 3)	712.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	7.26664062183501	7.18318911729959	7.32764206469567	7.57514534990113	7.94469568263617	7.59158259050532	0.681515241139081	0.00494515167366481	0.0607863433836209
Merged-chr9-65544419-2	chr9	65543919	65544919	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	35668.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.84043070723956	6.11333785880835	6.61468462599495	6.50354503803342	6.76440277425904	6.59019970743967	0.109740699608036	0.727982035704032	0.930348818287287
Merged-chr18-10532520-4	chr18	10532039	10533039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	77813.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	6.6693107970209	6.84965105921274	6.34381321709617	7.05196899857558	7.26009641697555	6.77325143015834	0.622983516666639	0.0325519247159607	0.219478206933446
Merged-chr12-103341368-4	chr12	103340851	103341851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14650.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	7.54095846386385	7.14893528790159	6.64039087773134	7.65854393089202	7.89564361085455	7.01818956667635	0.6034616963195	0.0836811781703585	0.38282729916423
Merged-chr1-144000510-10	chr1	144000005	144001005	+	921.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	3644.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.14824370142788	5.05597245214139	5.1287040487295	5.08072588420186	5.24371760883767	5.43697373256165	0.297394146659926	0.40984250532033	0.783037226945994
Merged-chr13-37873687-4	chr13	37873095	37874095	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-14839.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.64821206481512	4.50187608387326	4.47387822316649	4.0675747117087	3.83982261133126	4.18791022849517	-1.4326897124637	0.00260020133602222	0.0377719191284456
Merged-chr15-76351718-4	chr15	76351223	76352223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025340)	promoter-TSS (NM_025340)	429.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	6.65025568373039	7.22368767548351	7.05036193929688	6.92002758867024	6.93693918200487	6.81488222741709	-0.158492946496411	0.568361462790229	0.868549528189122
Merged-chr7-4138226-2	chr7	4137726	4138726	+	624.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172736, intron 1 of 14)	intron (NM_172736, intron 1 of 14)	1170.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	4.29051134438682	4.23225253156085	4.67717795768725	4.71587726485287	4.77607667321156	4.2199019094879	0.489165064476464	0.308747199979981	0.704710931722241
Merged-chr11-103027847-4	chr11	103027325	103028325	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-718.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	8.27746608206428	8.4306251638087	8.17167408235239	8.54438820047474	8.86040439639665	8.15739686201373	0.362597279002995	0.15872460951908	0.530537931856658
Merged-chr11-75677991-4	chr11	75677445	75678445	+	722.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1314.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	3.73302887938046	3.61186517648284	3.62471028261165	3.88690982575275	3.4308908848803	4.21066789524447	0.695241454745168	0.248439906775862	0.645541884364547
Merged-chr10-24638514-2	chr10	24638014	24639014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43072.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.8106377874013	6.94612797935967	7.02220561671172	6.86127476165226	6.9393707883327	6.76721464218158	-0.0951233660836049	0.702671581188852	0.92197390134291
Merged-chr17-59179259-4	chr17	59178764	59179764	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEi|LINE|L1	-165942.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	2.58165849304805	2.97562975166185	2.93322094745256	2.58744806371145	2.54077921285843	2.76907370822735	-1.12988648200362	0.151612799500308	0.519079091424247
Merged-chr15-25537257-2	chr15	25536757	25537757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85293.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	2.72127967062077	2.52164133421062	2.74601236393369	2.6195091949184	2.64517873255678	2.63326464055479	-0.171255833595984	0.821221600237932	1
Merged-chr12-76536924-4	chr12	76536388	76537388	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	3328.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	6.31445625143313	6.32866156882382	6.6463097310882	6.60004334177617	6.75106430306584	6.78120632032736	0.455242384500045	0.0940874448973114	0.408560072801142
Merged-chr6-134171046-4	chr6	134170534	134171534	+	813.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	135334.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.99614269720388	4.79576041088734	5.23531470045625	5.23631990910689	5.05377763094787	4.88799981030457	0.130962818044966	0.73848945554149	0.934032187674406
Merged-chr19-60873680-2	chr19	60873180	60874180	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007452, intron 1 of 6)	intron (NM_007452, intron 1 of 6)	858.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	3.50215548337613	3.33480278710174	3.48675160792979	3.48787704210434	3.62939898314829	3.50283295953739	0.384395817735968	0.505818447393082	0.838177729332582
Merged-chr10-121365999-4	chr10	121365508	121366508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	918.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	8.41126862622738	8.57644539797588	8.2807910409995	8.47420575266161	8.72130484884743	8.0808545725377	0.0402802187927425	0.873109114562748	0.970371929331986
Merged-chr2-6565979-3	chr2	6565508	6566508	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	155654.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.31906868965575	3.26108058345238	3.08148581430239	3.16415834837292	3.43753284575796	3.38724897752183	0.434709090171436	0.49700188345809	0.833442633454308
Merged-chr3-8928965-4	chr3	8928466	8929466	+	859.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-5109.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	4.61899233663321	4.55287343644859	4.41098364589501	4.29788702245227	4.13648999193832	4.25138143821071	-0.812639628830932	0.0684884275709268	0.342310492631047
Merged-chr7-43531033-3	chr7	43530526	43531526	+	740.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 3 of 6)	L1MB7|LINE|L1	2145.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	5.77505773494086	5.77771790336578	5.80853905215924	5.41142332173234	5.46414247518274	5.7970237293738	-0.424190411056142	0.191467835853704	0.578091345710453
Merged-chr19-24417848-4	chr19	24417337	24418337	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	59637.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	4.16282758427153	4.03525718620607	4.05827808727682	4.89140527196253	4.83455306386676	4.68207672577827	1.85113775957456	3.52036681707305e-05	0.00117876330830992
Merged-chr14-64637589-4	chr14	64637097	64638097	+	969.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14934.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.56888427342687	5.72468887611297	5.16201686084242	5.51239263621173	5.55498212986462	5.07676928615706	-0.205556023206696	0.591384288969456	0.877579413986918
Merged-chr6-123260381-3	chr6	123259903	123260903	+	957.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1704.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	5.15435524335322	4.89858507147985	4.41651294858311	4.36134857055993	4.38012993483596	4.34155074552994	-1.22023228041932	0.00834996173546001	0.0887191930047982
Merged-chr7-59228658-4	chr7	59228157	59229157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173010)	promoter-TSS (NM_173010)	-93.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	8.25805284783118	8.59807815379063	8.11127161333511	8.13123006741763	8.15358816787097	8.40557219523557	-0.156683495383225	0.515389549779416	0.843619106465076
Merged-chr7-25740132-3	chr7	25739664	25740664	+	978.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 7 of 7)	MIR|SINE|MIR	14595.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	4.88825721080623	4.91855830742301	4.77655575610849	4.56773480214226	4.66670956091871	5.14481213867761	-0.137143559824453	0.745762719246334	0.936251303305737
Merged-chr9-35100986-2	chr9	35100486	35101486	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-15742.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.01464725516469	4.62708890923339	4.68546511414506	4.47873068041869	4.47868001382905	4.78973131278128	-0.497451731356085	0.248606044126586	0.64569263919114
Merged-chr19-12464882-3	chr19	12464384	12465384	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	4105.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	8.12478890439372	8.52642028571611	8.14917078022023	8.10675763061242	8.36242342790447	7.80013325740313	-0.232433307586771	0.370532293467652	0.754838358760403
Merged-chr17-86967881-3	chr17	86967390	86968390	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	4779.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.22443650176377	3.88708999465699	4.00814516861078	4.21183743369991	3.9256428187766	4.07759432806488	0.0690510197377493	0.89115291610731	0.974773916701158
Merged-chr2-166294329-4	chr2	166293822	166294822	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	20414.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	4.90169396248711	4.42200927297233	4.51171040423046	4.37561432348061	4.00187496557424	4.21738733376231	-1.11304492251148	0.0206050778116986	0.164587435399425
Merged-chr8-70906134-5	chr8	70905643	70906643	+	864.6742550000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173013, intron 1 of 6)	CpG	169.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	6.01255170577432	6.18256267749208	6.6925636134217	6.36806447887727	6.0589547285884	6.35957016489899	-0.0884589002201679	0.787297160832668	0.948765654678185
Merged-chr12-99739150-4	chr12	99738652	99739652	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	-111178.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	4.13915818075905	3.85157600150416	4.1875584815673	5.15994783986654	5.18568275144149	4.87241110630767	2.5975370774886	1.61562437954832e-08	1.39597999349383e-06
Merged-chr16-76053321-1	chr16	76052821	76053821	+	705.0	f0_balb.idr	Intergenic	L2c|LINE|L2	52537.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	4.73605435567205	4.95694911166195	4.67991519722914	4.87343875017663	4.76327260377146	4.78681075173465	0.00783601270233219	0.98428617975464	0.996562360159937
Merged-chr14-20845890-4	chr14	20845393	20846393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9231.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	7.21037522838954	7.38611661175919	7.26392673960219	7.48385069099791	7.73575613907491	7.29784601422329	0.35001924982077	0.157928967095519	0.529476893092205
Merged-chr1-127204979-4	chr1	127204484	127205484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-2.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.27555712984629	6.48389323659488	6.52142078848889	6.39330324248664	6.54486444003689	6.56350781602263	0.121366536403389	0.654327665944227	0.903746371885785
Merged-chr5-113649003-4	chr5	113648508	113649508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	1382.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	8.20745460188827	8.2169446697309	7.98533258748848	8.17947369241372	8.43546601144335	7.87171264804805	0.066425745846005	0.787162220265134	0.948718549121005
Merged-chr7-127992821-2	chr7	127992321	127993321	+	804.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_023258, exon 3 of 3)	exon (NM_023258, exon 3 of 3)	1046.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	4.28377572906595	4.46166598265448	4.77563744068959	4.3874464527026	4.31583360530201	4.6225553759342	-0.182010946789431	0.691646666665587	0.918398695262194
Merged-chr4-14863619-1	chr4	14863119	14864119	+	989.0	f0_balb.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-600.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	6.60191774763648	6.39208644513355	6.23497914204089	6.44198432879847	6.37455809130832	6.41507283173041	-0.0290113638335768	0.91671753665411	0.98141132984979
Merged-chr11-74648160-4	chr11	74647665	74648665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	8.32763370116539	8.22137546817191	8.14789485832228	8.0907721974502	8.40912794798021	7.97820676606232	-0.0783984658858777	0.734856978510566	0.932617455907478
Merged-chr13-100873589-5	chr13	100873073	100874073	+	754.179993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40146.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.7553904910793	4.75246280269628	4.57967003670075	4.84304194591421	4.8834074707647	4.41864376876275	0.0942455236635303	0.825639141269318	0.958871344165038
Merged-chr12-44283546-3	chr12	44283029	44284029	+	972.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026164, exon 2 of 10)	exon (NM_026164, exon 2 of 10)	14375.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	3.06201607329056	3.06462714162517	3.2955406263694	2.88738160845493	2.80640180068139	3.14999467806409	-0.887887734153896	0.202926630124386	0.592772302593993
Merged-chr1-171410373-4	chr1	171409860	171410860	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	-953.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	6.64950154150968	6.52938585532693	6.11951672315166	6.23583021085718	6.61868618366959	6.55873338360484	0.0324763367736798	0.915113479230096	0.980959026698783
Merged-chr18-52563793-4	chr18	52563298	52564298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33931.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	5.84732808250388	5.96520091283502	5.8904955739653	6.1669022741965	6.10135238961925	5.99971535364015	0.332999733827009	0.252214535754709	0.64970951645701
Merged-chr12-40493561-2	chr12	40493061	40494061	+	906.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	47508.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.68119456318439	3.85677320303422	3.90046898142491	3.60736365896809	3.60351664171252	3.61440297791356	-0.691967423371581	0.202620320387867	0.59252027125208
Merged-chr15-97949835-4	chr15	97949316	97950316	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14413.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	5.90018169056708	5.84688108139193	6.04115047563128	6.3302326437876	6.16805412590626	5.83536240352966	0.363479107042137	0.240163587664565	0.637148699221819
Merged-chr17-84340780-4	chr17	84340317	84341317	+	841.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	125391.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	2.58782198982045	2.48502507827213	2.41493019152143	2.59299355227293	2.60056334442087	2.68356358560407	0.716789629014543	0.360980998934934	1
Merged-chr14-63445576-2	chr14	63445076	63446076	+	650.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9182.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	4.30907930764364	4.24216182935389	4.30752226938186	4.03175882815988	4.35809187227579	4.0960687470016	-0.284902081825963	0.549372161188775	0.860273914502926
Merged-chr19-9980424-2	chr19	9979924	9980924	+	785.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073181)	promoter-TSS (NR_073181)	-176.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	4.41794221671561	4.36410381732796	4.40531879990457	4.08462119721237	4.31901032819988	4.25201065516808	-0.450753013480256	0.321587478064719	0.71497490714501
Merged-chr5-17878652-3	chr5	17878127	17879127	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	10332.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	4.05763920980867	4.21149397369602	4.27340253619865	4.10304722696773	4.14258464032261	4.25301825858514	-0.0442985917699293	0.924853473092911	0.983070278897208
Merged-chr17-21909690-4	chr17	21909189	21910189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256493, exon 1 of 5)	5' UTR (NM_001256493, exon 1 of 5)	237.0	NM_001256493	70081.0	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	4.33513812395063	4.7568370043086	4.63902953398126	4.61013775938754	4.47082542092928	4.81678406783323	0.099723015078479	0.821471984753374	0.958023303204974
Merged-chr4-62396013-1	chr4	62395513	62396513	+	540.0	f0_balb.idr	intron (NM_139291, intron 3 of 3)	RLTR19-int|LTR|ERVK	12610.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	3.47231621910197	3.74736294075557	3.731104611893	3.64799976699658	3.57771393494937	3.47881708853168	-0.284946127998638	0.61614794922505	0.888272754285876
Merged-chr18-31609846-5	chr18	31609254	31610254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026165, exon 1 of 8)	exon (NM_026165, exon 1 of 8)	176.0	NM_026165	67453.0	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	6.9305849019025	7.01734961138009	7.18006690681795	7.09241565303104	6.72221258253813	6.84259290351129	-0.227008454309871	0.38439514630965	0.765515086260431
Merged-chr19-6057897-4	chr19	6057470	6058470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160239)	promoter-TSS (NM_001160239)	3.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	7.95904101409151	8.12389078738553	7.62266023865722	7.6098804262259	7.75059601719229	7.94342992943521	-0.220429587839843	0.377183705504638	0.759616521190546
Merged-chr2-4562090-2	chr2	4561590	4562590	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	2336.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.6221766450131	5.68057726276747	5.62403826585173	6.29818299801427	6.21082076610367	5.90222499074755	0.902573311304918	0.00337278296803334	0.0458866130157159
Merged-chr15-98153068-4	chr15	98152564	98153564	+	924.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-7362.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	3.3840937669273	3.3276661753695	3.60429555784631	3.59649415204378	3.33287133913889	3.40833828370056	0.0459700614589819	0.938858749495027	0.986550175078409
Merged-chr8-71592117-4	chr8	71591634	71592634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-50.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	7.48635178009469	7.62004301487278	7.49830314718552	7.49216807237856	7.58942631754335	7.41992701162386	-0.0457289791259753	0.838973546499491	0.962661318823582
Merged-chr9-94614143-4	chr9	94613745	94614745	+	811.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-55647.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	2.79971097821411	2.63380554379196	2.76566006381704	2.77050909534045	2.46776583283345	2.58526489229685	-0.673500900699203	0.386945472624698	1
Merged-chr7-128238245-8	chr7	128237740	128238740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177001)	promoter-TSS (NM_177001)	-209.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	8.20860511848087	8.19115364408088	7.89927349857913	7.93821503019297	8.09042241848066	7.65399267506882	-0.279621995650064	0.247264377190878	0.644156991148984
Merged-chr12-102394633-4	chr12	102394135	102395135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 13 of 13)	intron (NM_011175, intron 13 of 13)	45178.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.24252230371538	5.09269662120144	5.20622038541542	4.93077933747367	4.81427254419172	4.92859273597474	-0.627620599384809	0.0887133266132209	0.395375387296887
Merged-chr2-75772820-3	chr2	75772317	75773317	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59360.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.70452464405767	4.267692519092	4.42780374449878	4.58176933532894	4.73073223451084	4.10112778968538	0.066716135066058	0.892898584076918	0.975146620821922
Merged-chr10-77563851-2	chr10	77563351	77564351	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 14 of 15)	intron (NM_008404, intron 14 of 15)	-17804.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	3.00565681426384	3.24389927577136	3.48825056175575	3.48578438890108	3.2232291246697	3.28741830813076	0.325183822373665	0.620016370531343	0.890023686663772
Merged-chr8-85081419-4	chr8	85080929	85081929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	466.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	7.69541334495444	7.5391370995905	7.76956359291098	7.57254576165535	7.74200484957375	7.51477668510257	-0.0707446992377228	0.757506090444356	0.939883186830738
Merged-chr4-139598637-3	chr4	139598130	139599130	+	779.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	MLTR14|LTR|ERV1	23910.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	7.44712671887424	7.2986297004562	6.81839657521317	7.36038570188508	7.54812059902141	6.87730887944166	0.115913004226581	0.705250063623258	0.922752532336883
Merged-chr13-111807230-3	chr13	111806723	111807723	+	923.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1770.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.34216875049992	7.43450199824796	7.29352012545365	7.56948374572263	7.88863386092727	7.36242864612994	0.402836154398215	0.111348775838676	0.445802287445728
Merged-chr6-115675012-2	chr6	115674512	115675512	+	868.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	876.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.03172370026726	5.37972869812738	5.18310451000755	5.1727221418011	5.09942766349672	4.75990244356275	-0.365175281906445	0.348040240479077	0.735982909356061
Merged-chr17-27012146-4	chr17	27011651	27012651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5884.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	5.47104796913036	4.98105748776845	5.05774126561558	5.31212355224154	5.13589599541322	5.1231546976328	-0.00353536340090412	0.99264321120394	0.998523796268552
Merged-chr13-99331694-3	chr13	99331176	99332176	+	998.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 6 of 9)	intron (NM_026873, intron 6 of 9)	13002.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.41521892168883	3.43481381446321	3.57362308039597	4.19484595225647	4.17940153269212	4.28574150580584	2.51884562068183	6.32822401339505e-06	0.000270863613017785
Merged-chr12-111915008-4	chr12	111914510	111915510	+	964.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6955.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.94287438240329	5.02581525007927	4.94942405642693	4.89870330653375	5.06713712918963	4.70070937676774	-0.138392807281425	0.722437190983407	0.928821151735982
Merged-chr4-136021793-4	chr4	136021295	136022295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013736)	promoter-TSS (NM_013736)	-146.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	7.76296645931257	7.52709583168838	7.25602065214192	7.65535210148163	7.42980449628274	7.42809358957089	-0.0449570278935115	0.859559710365821	0.967379613981649
Merged-chr11-120721705-6	chr11	120721384	120722384	+	831.222229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153545)	TTS (NM_153545)	416.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	4.12787720692658	4.02485160346718	3.9718278589404	4.18820591554183	3.77045399968113	3.53527296738447	-0.539383412377838	0.344461095662293	0.73309765066036
Merged-chr15-58631313-2	chr15	58630813	58631813	+	811.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192114.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.97218014823078	5.14551177430284	4.87409856037281	4.82046422688946	4.73282494554458	5.01114518499524	-0.353819279134339	0.363417709230357	0.749020076884104
Merged-chr4-40285803-3	chr4	40285279	40286279	+	627.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	2.88616771160677	2.62507892266159	2.85753655035657	2.7272350367408	2.77327123282863	2.80930674214703	-0.120184727657135	0.869553686741473	0.969821240077951
Merged-chr6-149409547-2	chr6	149409047	149410047	+	894.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009753, exon 1 of 9)	exon (NM_009753, exon 1 of 9)	563.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	2.62765567511911	2.58362038096824	2.67991178794954	2.45841243148193	2.50533218481059	2.56668709031149	-0.705062707005148	0.362314545383263	1
Merged-chr5-107986372-4	chr5	107985857	107986857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	MamSINE1|SINE|tRNA	720.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	6.58380188259478	6.667889983459	6.61106927905751	6.3446614050438	6.3879138304836	6.7778755198508	-0.183995861469923	0.508382367356968	0.839818423824339
Merged-chr9-35055796-4	chr9	35055275	35056275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-60953.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.29396694946501	7.23258957728881	7.11997310562017	7.12848193957681	7.48533322405369	7.11303359980317	0.0642052415608564	0.799412320099484	0.952248176414355
Merged-chr19-58983765-2	chr19	58983265	58984265	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	B4A|SINE|B4	-40093.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	2.82733832044454	3.0612661011283	3.07628131537425	2.72962503916767	2.76369182885098	2.97647019659751	-0.830924994720514	0.248236709295155	0.645416995501399
Merged-chr8-46140079-3	chr8	46139572	46140572	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15926.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	7.23507768474989	7.26871202937091	7.14700571647739	7.4782793726868	7.53297558404614	7.16646669011662	0.282117109024254	0.245612172308137	0.642645689440908
Merged-chr6-113692852-5	chr6	113692317	113693317	+	825.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 11 of 11)	RMER17C-int|LTR|ERVK	-4233.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	3.25422814370123	3.37099915640802	3.52036060365101	3.41719023031671	3.11255249899347	3.68891488687714	0.141504345026479	0.826060334595828	0.959063571361885
Merged-chr11-105424485-4	chr11	105424011	105425011	+	977.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	intron (NM_001039242, intron 4 of 5)	32224.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.40155675854529	5.05047910285401	5.07375656194418	5.20391336263944	4.82400692236382	4.95740413066502	-0.394978086108326	0.311196141648841	0.706465219571547
Merged-chr15-102192557-4	chr15	102192057	102193057	+	981.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359128, intron 3 of 15)	L2|LINE|L2	-3514.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	4.4348481478051	4.58281706356227	4.99010147161043	4.27261989686262	4.00363651429015	4.75998830934245	-0.761782635972807	0.137267613089915	0.495027571456897
Merged-chr11-70667512-4	chr11	70667003	70668003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167669, intron 1 of 6)	intron (NM_001167669, intron 1 of 6)	1913.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	6.71637280711356	6.44398830008116	6.66286625443069	6.45550789606607	6.4587817787317	6.46682888787276	-0.24138414407694	0.365346955527592	0.750463846043741
Merged-chr10-84340830-2	chr10	84340330	84341330	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99641.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.8346339665814	4.71809315937272	4.8447047905883	4.57678815073019	4.55315229798698	4.3253381504227	-0.713877321496427	0.0892302135144004	0.396807632200643
Merged-chr2-11206248-2	chr2	11205748	11206748	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	33866.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	1.96995698954615	1.98472399322165	2.06242360402691	2.18950548538298	2.01784488307175	2.2702034497674	1.19375152795248	0.19680223817709	1
Merged-chr15-81000457-2	chr15	80999957	81000957	+	564.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	intron (NM_001357669, intron 1 of 20)	22692.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	3.66018661765227	3.35255541248328	3.77678964810677	3.71542664852624	3.53199080097815	3.59030845397078	0.0391715463604605	0.946312009479081	0.987965428530715
Merged-chr3-133585109-4	chr3	133584632	133585632	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-40742.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.24154730225643	4.28838852014549	4.33801249987913	4.34240744645019	4.50438633207385	4.68625495599981	0.581278276328906	0.190894097016625	0.577428967011753
Merged-chr15-43281862-2	chr15	43281362	43282362	+	778.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 1 of 12)	intron (NM_008388, intron 1 of 12)	874.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	5.18311112253317	5.45216753307084	5.13431916891747	5.20740736097724	5.56936642620226	4.97570900920282	0.0412862026732787	0.91593159072168	0.981201223155309
Merged-chr16-91761985-4	chr16	91761503	91762503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	32632.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.74764033685395	5.82726774595063	5.82751136984821	5.74045218477765	5.96080543892355	5.76184314430113	0.0592655083155264	0.846745105163078	0.964111312125802
Merged-chr4-149307822-4	chr4	149307303	149308303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290995)	promoter-TSS (NM_001290995)	-70.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	7.55063330817105	7.17674080818614	7.0742272993508	6.92251558763509	6.78034891378431	6.89655178541921	-0.645227189310834	0.014413871224875	0.129212389235014
Merged-chr17-67348052-4	chr17	67347544	67348544	+	813.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	6415.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.35392631101789	8.52454295581031	8.16737919907744	8.01371811545735	8.50640885303334	8.12636635870975	-0.169074291559827	0.494101593683507	0.831815174927983
Merged-chr18-58555691-4	chr18	58555188	58556188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081072)	promoter-TSS (NM_001081072)	-552.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.15469712970254	5.20009602279217	5.28143632660154	4.44051018683526	4.66016988605005	4.7294334583783	-1.32695339747618	0.000763897191639518	0.0146558352598434
Merged-chr7-80575892-4	chr7	80575352	80576352	+	901.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40733.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.1586957765146	3.04881138256382	3.12721256774336	3.45862931698267	3.42854846285608	3.31939548027498	1.22505751976744	0.0507424118424437	0.286946140373269
Merged-chr6-96116298-1	chr6	96115798	96116798	+	797.0	f0_balb.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3144.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	4.99110082314811	5.28972106828849	5.00123234677113	4.74696965924371	4.53032135671342	4.5033007526775	-1.14551382979663	0.00485077890399473	0.0599559731199634
Merged-chr4-141665457-2	chr4	141665081	141666081	+	893.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.45450350121041	3.61796290252663	3.68410224656733	3.62358461956361	3.66494229115045	4.03510932056864	0.652686715078197	0.24999955903316	0.647199473585621
Merged-chr19-32952578-4	chr19	32952073	32953073	+	882.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	194996.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.79655170112301	3.9665842093494	4.64572995760723	4.16318940346903	4.05382143236454	4.06976644975909	-0.239194627022737	0.667637629716793	0.908809395086867
Merged-chr6-52477644-4	chr6	52477161	52478161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14790.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.62131481811684	4.59269625161593	4.42353233325014	4.6429734017988	4.64262021085663	4.25244651192665	-0.0429625937956097	0.922979518995376	0.982629432513311
Merged-chr8-19958086-3	chr8	19957587	19958587	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	RMER16_Mm|LTR|ERVK	228511.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	2.75712483704403	2.79620587056253	2.8168684547638	2.54009706624261	2.71100331934971	2.76855312614709	-0.607629360658759	0.415144131788251	1
Merged-chr11-93861428-4	chr11	93860890	93861890	+	860.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013375, intron 12 of 13)	intron (NM_001013375, intron 12 of 13)	24376.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	4.34060282149294	4.57508996618627	4.44251690704643	4.04072603812417	3.99615125954648	4.0540445898057	-1.1894936507611	0.0111104173409141	0.108277770684327
Merged-chr7-145308424-4	chr7	145307927	145308927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145379, exon 3 of 3)	exon (NM_145379, exon 3 of 3)	-6408.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.98364312555428	4.51045797639498	4.08401214262584	4.0516295928881	3.98780790033453	3.95175547355033	-0.635209045048419	0.216934617378989	0.610549109497049
Merged-chr4-107315175-1	chr4	107314675	107315675	+	759.5	f0_c57.idr	intron (NM_001205156, intron 1 of 8)	L1MEc|LINE|L1	812.0	NM_001205156	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	4.11822653824083	4.14097532473833	4.03701150150298	4.74233438422275	4.65498920914072	4.76688570477762	1.59041702585564	0.000385166772622628	0.00854638848436898
Merged-chr1-191110072-4	chr1	191109567	191110567	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11653.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.4510433811875	6.45139417783314	6.30123167399936	5.97979991789223	6.36158270822901	6.70286496656991	-0.0520445620464384	0.86823449583694	0.969642939011354
Merged-chr18-60730746-2	chr18	60730229	60731229	+	630.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	2412.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.2721362663044	5.03571706981885	5.52138742609891	5.31313714786891	5.17310952028421	5.23579603934301	-0.0798170666868463	0.828134811795652	0.959633697141491
Merged-chr19-18647038-4	chr19	18646541	18647541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 8 of 8)	PB1D10|SINE|Alu	15025.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	6.822128923178	6.80506203253508	6.50711083316321	5.98139353158948	6.0444232071293	5.66571251152307	-1.3264953793506	1.04889292700873e-05	0.000417989859533249
Merged-chr5-142447805-2	chr5	142447305	142448305	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-16126.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	3.54092550130309	3.28005786705177	3.47037222658194	3.00980656786104	3.02671157550499	3.26927268731411	-1.41578813435657	0.030881991088056	0.21267589753933
Merged-chr7-24299541-4	chr7	24299060	24300060	+	999.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	-11.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	3.90843537341327	4.46606238622861	4.63438918496599	4.18306837598472	3.90832417443582	4.39427445749521	-0.526614262400473	0.32703534135392	0.719317370353337
Merged-chr7-101900027-2	chr7	101899527	101900527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027532)	TTS (NM_027532)	3696.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	6.90676103375025	7.14364845600498	6.85384994104703	7.24892238577167	7.25476265832069	6.99964217146288	0.300516414565195	0.235583343512787	0.631834478188417
Merged-chr12-25097330-4	chr12	25096825	25097825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1233.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	7.57861395123383	8.08054177272631	7.49802520020127	7.68000068732997	7.97073303859988	7.56521808476377	0.00376100242423452	0.989064185354842	0.997508825363283
Merged-chr13-21181012-4	chr13	21180520	21181520	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009054, intron 1 of 7)	CpG	1089.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	6.67825849656827	7.04650844222846	7.17240151742918	6.53838179666586	6.85083493411532	6.81448294447718	-0.361775727644906	0.198182537682828	0.586445873078056
Merged-chr5-122733911-2	chr5	122733411	122734411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	26367.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.52260012513833	3.42952273331671	3.26421399549106	3.24968074862411	2.98287297668855	3.21858501358689	-1.09944071581259	0.0900880849607667	0.399044417003752
Merged-chr10-128413626-2	chr10	128413161	128414161	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	2045.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	4.02834284691948	4.01250655469991	4.18086914796519	3.71047967962256	3.91553582676407	4.02269073698952	-0.557938707063236	0.272770546202548	0.669951714189667
Merged-chr2-167841847-2	chr2	167841347	167842347	+	666.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90480.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	2.86353207698912	2.68780912131408	2.8706774332949	2.93085723111548	2.73262618385657	3.11633486481982	0.597696662341614	0.411164304820064	0.783877099438722
Merged-chr6-100163943-4	chr6	100163464	100164464	+	954.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123394.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.45501728183073	4.73382546103472	4.51596013627687	4.62419934969499	4.28256847537471	4.62370869582823	-0.164758523123425	0.710506995031511	0.924358113435436
Merged-chr14-13962433-2	chr14	13961931	13962931	+	648.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359901)	promoter-TSS (NM_001359901)	-579.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	4.43761288402357	4.31201899946648	4.25312313974615	4.30591016658024	4.50841295743039	4.2267625346934	0.0579300764913447	0.898853947492743	0.976432549466174
Merged-chr18-46745963-4	chr18	46745442	46746442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009681, intron 1 of 5)	intron (NM_009681, intron 1 of 5)	4066.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	4.11078133216868	3.94621418989726	4.09158978483876	4.08012811152068	3.99091787047531	4.01671216549479	-0.059909810072671	0.901871728299328	0.977365418427752
Merged-chr15-88819470-4	chr15	88818939	88819939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	-121.0	NM_145477	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	6.6752973577824	6.76603958538568	6.42014154497986	6.75157040316864	6.76549748341971	6.29531597780712	-0.00480723294256585	0.986799622469255	0.997093140006822
Merged-chr14-27562819-4	chr14	27562314	27563314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-54354.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	4.39245716569708	4.26717987539581	4.70008782177766	4.3835323986847	4.3301931365202	4.72824207779061	0.0694294764146164	0.880970565767978	0.97262624933271
Merged-chr4-34389398-4	chr4	34388905	34389905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161210.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	7.00136569066731	6.89362500934829	6.81476374409009	6.71787163044564	6.80149712366363	6.61532973389473	-0.294838906748411	0.242554308868462	0.639697588980254
Merged-chr17-50186593-2	chr17	50186093	50187093	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	3904.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.0316020463165	2.8993943469482	2.71421375578881	2.76932860786898	2.65667187989464	2.91198251903213	-0.591956961533383	0.426403641918587	0.793775990271191
Merged-chr14-20804482-1	chr14	20803982	20804982	+	571.0	f0_balb.idr	Intergenic	Intergenic	10243.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	4.81434852630436	4.69804165652244	4.67821997990495	4.61071910378079	4.33755655352705	4.4960262483581	-0.614283447490391	0.144269168171897	0.507090311546791
Merged-chr2-160364299-2	chr2	160363799	160364799	+	935.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	2766.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.1561788947205	6.48246940712392	6.3636809833531	6.64006440398378	6.24624162504989	6.15556635253912	0.0447144554280461	0.882973402863177	0.973343819056613
Merged-chr8-71680685-1	chr8	71680185	71681185	+	639.5	f1_c57bl6.idr	exon (NM_010589, exon 8 of 25)	exon (NM_010589, exon 8 of 25)	4302.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	1.8403949711711	1.82920365811879	1.9198044612583	2.242857938597	2.42567461153465	2.27818212387679	5.8131073378335	3.28211691971653e-05	1
Merged-chr12-30257800-1	chr12	30257300	30258300	+	599.0	f0_balb.idr	intron (NM_001324521, intron 8 of 15)	intron (NM_001324521, intron 8 of 15)	115575.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	2.44897541097938	2.34233486494788	2.55163541251661	2.10047100549965	2.2052083284237	2.44073176634531	-1.32705393032517	0.144280381654806	1
Merged-chr4-139248323-2	chr4	139247823	139248823	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	54212.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.53361597051751	5.31251220327038	5.93426315417613	5.99403741211565	5.57139034583253	5.57013310209216	0.224059270473506	0.542271423895014	0.857067349203709
Merged-chr13-54693009-3	chr13	54692519	54693519	+	763.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	941.0	NR_027395	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	6.28085280419476	6.28583357836634	6.15656383111097	6.45060580078284	6.60714235229517	6.81228758462122	0.614779945298637	0.0266141736356128	0.19406819383683
Merged-chr6-38965655-4	chr6	38965160	38966160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	MTEa|LTR|ERVL-MaLR	46674.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.87752423051387	5.30064162229861	5.66982007837136	5.67360806915155	5.51752760805646	5.50906904926851	-0.127666142605085	0.717871665356095	0.927216085145081
Merged-chr10-125317570-4	chr10	125317067	125318067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-8751.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.56752142231959	5.57802712795075	5.2879661181633	5.82055842849874	5.94947668141338	5.82089840828163	0.682098551418784	0.034670444452916	0.228273203914661
Merged-chr10-83910986-6	chr10	83910510	83911510	+	979.984131	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	188145.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	5.0358483262744	4.68765666926237	4.94498422985535	5.37160101810374	5.29965185879084	5.3434736131346	0.923059988383628	0.0129649379414828	0.120702350467491
Merged-chr12-24974214-1	chr12	24973714	24974714	+	572.0	f1_c57bl6.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	-718.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	2.73736556480703	2.66412439662925	3.12553539480204	2.90602653225697	2.79037505624589	2.79191823770102	-0.103490493958688	0.88971924272091	0.974307206100251
Merged-chr17-43581358-5	chr17	43580905	43581905	+	818.34668	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10104.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	6.54571683293038	6.30050979729417	6.07402358225106	6.27791657946577	6.24181450659569	6.32708451031555	-0.0862815333766246	0.76735761957293	0.942617496111852
Merged-chr17-26502023-4	chr17	26501509	26502509	+	976.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	6463.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	6.74903047597572	6.63053145929989	6.31710089367265	6.28625283970102	6.21375727666464	6.27497620565209	-0.541151206534049	0.0546890325391881	0.300367328021173
Merged-chr7-45016271-4	chr7	45015807	45016807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008422)	promoter-TSS (NM_001008422)	-58.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	6.76445363508345	6.61993351336001	6.7269911967818	6.84669638874985	6.93982534420307	6.75421319386905	0.236573194851706	0.347351262441605	0.735486267278444
Merged-chr3-9984123-4	chr3	9983615	9984615	+	831.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28470.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	2.31548940478974	2.28562327967604	2.53161443685019	2.41082524853705	2.4935872579348	2.34929923150369	0.285442135512937	0.731071651478232	1
Merged-chr17-23706430-4	chr17	23705930	23706930	+	880.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19906.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	4.15611710329359	4.25215824338962	4.14401590474598	4.20405108422482	4.16397163734747	4.16530877168931	-0.0279571706881771	0.951862583100631	0.988976180066341
Merged-chr10-39731506-4	chr10	39731005	39732005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011264)	promoter-TSS (NM_011264)	502.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	8.01064858881572	8.09826670796991	7.93506485810613	7.88067223935365	7.95260451084621	7.9052047809047	-0.149633639706247	0.477654605033451	0.823296931819647
Merged-chr1-191333120-4	chr1	191332612	191333612	+	933.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	L1M2|LINE|L1	7147.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	5.64581759595757	5.35119673141042	5.34918260832035	5.46491056848657	5.6549520596871	5.69900329943073	0.277023145602168	0.412833625087192	0.784664906488534
Merged-chr9-45122522-4	chr9	45122057	45123057	+	924.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4681.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	3.51758220426064	3.17299499373238	3.22592903852496	3.22716393712195	3.11330316454484	3.56361444732726	-0.035902830087805	0.956655250482001	0.989887454023164
Merged-chr11-70786096-4	chr11	70785611	70786611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21664.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	8.36827421052117	7.98829424489286	8.0174994617938	8.1916664608577	8.59868379141774	8.0659937173243	0.243919364580943	0.343211054203283	0.732122577951311
Merged-chr11-105466967-4	chr11	105466466	105467466	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10231.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.87012090768348	5.61689408906823	5.76641651190026	5.7493143713223	5.61311947876115	5.49658059076519	-0.23282100579477	0.46896772908353	0.818823795567869
Merged-chr4-150570042-4	chr4	150569523	150570523	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	CpG	82151.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	8.12340574257466	8.40446050206572	8.10422973608279	8.2858709879309	8.44423767276685	8.02062174248363	0.0657107200596567	0.781247091413681	0.946170805022375
Merged-chr17-47594327-4	chr17	47593817	47594817	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 3 of 6)	intron (NM_001081635, intron 3 of 6)	850.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.32165437401567	5.28117230152251	5.95200636167057	5.53600332752747	5.49549937168097	5.53155748155179	-0.0400237134213994	0.914570791296107	0.980912729144991
Merged-chr10-120883606-2	chr10	120883179	120884179	+	964.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 1 of 6)	GA-rich|Low_complexity|Low_complexity	15292.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	3.49191881976147	3.37479349788757	3.36066230904822	3.2865683520833	2.91518311986582	3.53851128966122	-0.565129754872444	0.408868922434514	0.782383854304252
Merged-chr5-64335263-2	chr5	64334818	64335818	+	825.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310611, exon 19 of 22)	exon (NM_001310611, exon 19 of 22)	104961.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.11082192933551	4.67981550392343	4.88589844456973	4.51711190063354	4.31600848380499	4.74329805279365	-0.152476538678792	0.759014886504258	0.940311236380535
Merged-chr8-80739380-2	chr8	80738880	80739880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	79.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	8.24139128448804	8.22738695474204	8.081537624091	8.29699369652926	7.93231431131736	8.15813031566583	-0.0744965882943442	0.73956782373093	0.934245371298156
Merged-chr4-154963474-2	chr4	154962990	154963990	+	761.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305804)	promoter-TSS (NM_001305804)	-633.0	NM_001305804	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	3.68067908925934	3.38855959292925	3.46141079104529	3.47773395276289	3.48207066326815	3.69130157956075	0.106918355752146	0.85468859863877	0.965987623019113
Merged-chr11-113748190-2	chr11	113747690	113748690	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	2970.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.09792310225191	4.25821138731272	4.58161514026819	4.20523482759733	4.22365730515634	4.32770299206987	-0.179222687663661	0.706103848363887	0.922878730238431
Merged-chr16-17181501-4	chr16	17180967	17181967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	L3|LINE|CR1	20025.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	6.95025455651682	6.64945167263282	6.67615544843075	6.65700148331323	6.92417957282489	6.99841778246911	0.14976934831252	0.578550911644864	0.872437129840066
Merged-chr19-28337662-1	chr19	28337162	28338162	+	643.0	f0_balb.idr	intron (NM_175459, intron 6 of 10)	intron (NM_175459, intron 6 of 10)	-326496.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	2.33844472266191	2.3035824793621	2.47915698392901	2.31323373048992	2.37051549854689	2.22726002261551	-0.419238256615908	0.62030986209456	1
Merged-chr8-68212248-4	chr8	68211760	68212760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64268.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.89797456845503	6.04573954667928	5.83701468985585	6.10056170075749	5.96239919587154	6.08709402274906	0.19283022527727	0.51348140186816	0.842597552908258
Merged-chr9-108518200-4	chr9	108517703	108518703	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 1 of 9)	intron (NM_175143, intron 1 of 9)	1116.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	7.96670479299298	8.33271454841746	8.05883015798271	8.04485187499269	8.31473735874859	8.04965829667601	0.0214780800124761	0.926983013424133	0.983578869536024
Merged-chr13-52268503-4	chr13	52268005	52269005	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171764.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.68250430413688	2.90763668224327	2.69303095322362	2.92152527617951	2.74405648834593	2.89293331299942	0.420687935157945	0.56636263489116	0.867321286905744
Merged-chr17-5627441-2	chr17	5626941	5627941	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	134841.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.25194050558823	5.30378092230852	5.18162496417658	5.09920311018639	5.09633285049648	5.36941148045734	-0.135533799945272	0.703611963171791	0.922119521859599
Merged-chr11-83675912-4	chr11	83675413	83676413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13329.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	3.89209668316857	3.8695454094425	3.96185089326532	4.04775364614932	4.04683775691845	4.12499698303399	0.498273953082259	0.308398475394745	0.704469935667044
Merged-chr18-80161664-4	chr18	80161119	80162119	+	948.767822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-10137.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	3.75261283162633	3.5238294764047	3.7283181362669	3.91246757859798	3.39736879674474	4.12414507397086	0.547229058520193	0.365317307513719	0.750427350624492
Merged-chr3-96579942-3	chr3	96579434	96580434	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 6 of 7)	intron (NM_027241, intron 6 of 7)	-13133.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.76770636744137	6.07738054165421	6.3852226376349	6.76560273595484	6.76607219376381	6.69151243946563	0.471377808461611	0.123384802874134	0.470042341067999
Merged-chr16-36746887-2	chr16	36746387	36747387	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	38075.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	5.20391251157694	5.21773868163223	5.02741331979681	4.89535379109489	4.88388660936298	5.15980283619985	-0.389238328942802	0.296524350995385	0.693171366955017
Merged-chr8-95136025-3	chr8	95135538	95136538	+	739.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 2 of 19)	(TTTTG)n|Simple_repeat|Simple_repeat	6502.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	3.21397643913869	3.06804014916437	3.45630078215349	3.55374696008419	3.51918578765024	3.47336661735856	1.05923811301473	0.0879307536180669	0.393468252059807
Merged-chr13-100108086-4	chr13	100107602	100108602	+	983.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011353)	promoter-TSS (NM_011353)	83.0	NM_011353	20365.0	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	3.89894108137801	4.0815908989729	3.67537280850364	3.97668988222479	3.78175858472745	3.90665978759526	-0.0551177594975985	0.917725582333067	0.981718564389729
Merged-chr13-49186900-2	chr13	49186400	49187400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	-647.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.12687420002924	7.10037340523974	7.12370034560241	6.91754815398013	6.92615876350765	6.80905438917658	-0.346389239455239	0.146376011297608	0.510331229700642
Merged-chr9-60998277-2	chr9	60997777	60998777	+	883.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18792.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.11227865456681	3.11763448444105	3.47123733186021	3.23409753533742	2.92280747193059	3.05420288837257	-0.720837541838536	0.291501505961819	0.689089386291402
Merged-chr19-10602649-2	chr19	10602149	10603149	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1609.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	4.42399886960977	4.62589566226927	4.72315966589401	4.49888640079512	4.44634012020285	4.63644621530319	-0.167006375859443	0.695628989235151	0.919291538728398
Merged-chr11-107318745-4	chr11	107318230	107319230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	B1_Mur1|SINE|Alu	-129349.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	8.63587413474763	8.80341545156457	8.29820857270429	8.61497569022406	9.10834818714283	8.31458703961613	0.178981667087716	0.526101370336602	0.849279136234443
Merged-chr10-94370203-2	chr10	94369703	94370703	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MTD|LTR|ERVL-MaLR	58254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.40348620913912	3.25529264938304	3.44095642013867	3.48391700951407	3.10333374315505	3.89916017474859	0.598528656191897	0.369495434528619	0.754199183923683
Merged-chr7-19803903-4	chr7	19803399	19804399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7090.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	5.03775006056885	4.8370987764095	5.14048896857873	5.53724195588395	5.12331703201686	4.83468694839149	0.413958492575724	0.31151621787456	0.706534779537886
Merged-chr15-27663254-2	chr15	27662754	27663754	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	(TG)n|Simple_repeat|Simple_repeat	18288.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.35259530353665	5.19986520127503	5.62830376778916	5.41245335355321	5.63292074891193	5.52890215323232	0.266947819145376	0.442478381962134	0.803210868548523
Merged-chr17-34655799-4	chr17	34655313	34656313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017406)	TTS (NM_017406)	8667.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	3.22562298519058	3.05199232829419	2.85875162462703	3.37307112657419	3.02026728167078	3.57176564247092	1.15905395104266	0.111973516353725	0.446976492543948
Merged-chr6-72396116-4	chr6	72395615	72396615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5448.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	6.33509953475744	6.21113488009436	6.19527260325268	6.37566247707162	6.71892664866063	6.67517336184406	0.567549615689628	0.042058192248786	0.25680598088264
Merged-chr17-65604517-4	chr17	65604007	65605007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9048.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	5.77050688156522	5.90825762437817	5.77842988684054	6.11013228798331	6.05847733768535	5.89162320717877	0.359875512029787	0.228403634072465	0.623523936479715
Merged-chr5-103757120-2	chr5	103756620	103757620	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	2547.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.05530129044262	2.85024086155769	2.84622983171032	2.98873840073117	2.85564196492408	3.37446171557348	0.734560010741911	0.31098763721188	0.706228303558147
Merged-chr11-103269610-4	chr11	103269124	103270124	+	837.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2223.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	3.60249125683782	3.25681013396189	3.28859059334127	3.65470208001984	3.08239141316887	3.42036602415887	0.0457069458592769	0.945317886829829	0.987905335619201
Merged-chr18-53259513-2	chr18	53259013	53260013	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	13851.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.42509087277945	3.2759383004088	3.65752309596712	3.37204638952189	3.34508907177313	3.95438596976768	0.439024209628111	0.492697731911515	0.831198914822865
Merged-chr1-6492980-2	chr1	6492480	6493480	+	730.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	intron (NM_001244693, intron 2 of 22)	5749.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	2.72524606542038	2.888331896474	2.70113336203528	2.84573878497735	2.77660037095102	2.9579001649683	0.407818043417262	0.572961470502734	0.869934493236159
Merged-chr10-19007098-2	chr10	19006598	19007598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 3 of 7)	intron (NM_001166402, intron 3 of 7)	4865.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.27804459819673	3.19338555321087	3.24670272705483	3.31326517892738	3.07625738330653	3.42797475142452	0.137207233121385	0.828575381766196	0.959833682782168
Merged-chr11-59948185-4	chr11	59947686	59948686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045273)	promoter-TSS (NR_045273)	-28.0	NM_138675	192191.0	Mm.125288	NM_138675	ENSMUSG00000061650	Med9	BC019367|Med25	mediator complex subunit 9	protein-coding	5.87558815401065	6.11909636260313	5.86310449024299	5.78433083483938	5.64820460046898	5.71884576275238	-0.443889259252922	0.150333449568643	0.517246479850651
Merged-chr13-41433350-3	chr13	41432861	41433861	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	53999.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.18551735514473	4.21715867279304	4.23882297931327	4.07105562082456	4.11264086107107	3.91860781667283	-0.480080378598879	0.316292843064587	0.710339942934364
Merged-chr10-25362410-4	chr10	25361913	25362913	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	2615.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.87208444953888	5.82706449635663	5.65914169383197	6.29078809071678	6.03134102514716	5.7225103137403	0.435459003925338	0.180290897949021	0.562006707246925
Merged-chr3-95216614-2	chr3	95216114	95217114	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-843.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	4.36489919319942	4.59198755344697	4.82854616972339	4.71975967236304	4.55292802478327	4.63141150378258	0.085946116483789	0.842165258892935	0.963002495523594
Merged-chr9-15933107-4	chr9	15932621	15933621	+	928.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 21 of 24)	intron (NM_001080814, intron 21 of 24)	-58565.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	3.70328814561137	3.61058215212052	3.62439121868517	3.40112829041649	3.50666556298797	3.36170497734271	-0.796149138758279	0.168404939559465	0.544963178581416
Merged-chr18-46533806-4	chr18	46533306	46534306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	5.33170546662835	4.77108073673253	4.58391094509577	5.18048958627475	4.87018629666941	4.40895862769226	-0.175190341593929	0.723606679341205	0.929080851011554
Merged-chr15-78899830-4	chr15	78899327	78900327	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	59.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	6.45435730130741	6.42448627000642	6.79115511424177	6.58182755301718	6.79027506162305	6.76117212135851	0.251980922768749	0.356828624270046	0.743460467581681
Merged-chr2-129544758-2	chr2	129544214	129545214	+	597.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-8112.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	4.4303798883266	4.13776840846284	4.01924008044483	3.71940614203168	3.52535491460797	3.77882469148872	-1.72051113181428	0.00149618482854321	0.0246719277077732
Merged-chr14-61968721-4	chr14	61968274	61969274	+	866.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-286401.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.69689394454703	3.44722354481003	3.7635906887794	3.2904731724019	3.37390144660259	3.92348051455093	-0.299991818868063	0.634506280266682	0.896350313439852
Merged-chr3-61393185-4	chr3	61392660	61393660	+	970.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	28653.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.46946836786613	4.30321712055585	4.67695114925578	4.31778318894262	3.68931040831835	4.11936170298122	-1.14799154543827	0.0297365943789749	0.207681932607499
Merged-chr5-43186806-4	chr5	43186302	43187302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-46661.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.55015372829583	6.72253827879011	6.53997716525871	7.00293938040731	7.15077893215303	6.93375678770994	0.66154262815762	0.00928722921809785	0.0955927472512971
Merged-chr5-21692519-4	chr5	21692024	21693024	+	896.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359965, intron 1 of 4)	intron (NM_001359965, intron 1 of 4)	8872.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	3.12912256922783	3.22369714716619	3.41236984465866	3.4259569049665	3.29212711933703	3.07639016940123	0.0877136862416621	0.89206177390166	0.974942585822634
Merged-chr11-69125841-2	chr11	69125341	69126341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-536.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	6.39913928696584	6.43517817278161	5.88297431082541	6.15584787860252	6.05815447624549	5.59884327811536	-0.51268067249176	0.135088234978212	0.491223853222672
Merged-chr9-108692065-4	chr9	108691554	108692554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-89.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	8.11214480646862	8.44354240578652	8.13019196369064	7.93617062007061	8.43089858357707	8.03612444598814	-0.114250393591195	0.64974663303566	0.9023273707411
Merged-chr15-6557661-2	chr15	6557161	6558161	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22186.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.20147178687891	6.33730188826653	6.31102791422832	5.79177864869244	5.66011229347129	5.74483838864687	-0.963423680530503	0.000971166973928827	0.0176130910127877
Merged-chr6-136967330-8	chr6	136966654	136967654	+	815.15625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	12631.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	4.55675810531284	4.42902398968547	4.53804210378433	4.33522744171618	4.36592546359414	4.10244299682028	-0.581115341502589	0.19839268221822	0.586736489771581
Merged-chr7-118382140-4	chr7	118381656	118382656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362179, intron 7 of 7)	intron (NM_001362179, intron 7 of 7)	61404.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	3.33944942640167	3.20100384082416	3.28156425602716	3.25296467286338	3.05867538174992	3.2393417001842	-0.389986563468057	0.53623384653845	0.85392789486322
Merged-chr12-85963881-4	chr12	85963370	85964370	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115171.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	5.71260839271381	5.70598775342978	5.37749384973371	4.72075052963376	4.81950174205407	4.75292571173503	-1.7552990045214	2.61092320903003e-06	0.000125920833926237
Merged-chr4-129499520-2	chr4	129499020	129500020	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8330.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	4.30865265423546	4.17645283989777	4.92419009388003	4.48499831244628	3.95871105877866	5.07695992134215	0.194955988556676	0.825760879984137	0.958914556097435
Merged-chr11-118243229-2	chr11	118242729	118243729	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B3|SINE|B2	5363.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.25884274189947	5.33346833478222	5.0868619155724	5.10642799411763	5.3162974111895	5.2856843336263	0.00474179518596708	0.98937205106968	0.997597007948949
Merged-chr8-69272592-2	chr8	69272082	69273082	+	901.583374	f0_balb.idr|f1_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	1502.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	4.35530325408555	4.29551636015847	4.23393431470856	4.02308355523702	3.59949283240837	3.80579137408762	-1.44414094811176	0.00564299042979024	0.0667202139175442
Merged-chr11-106787681-4	chr11	106787180	106788180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 2 of 13)	CpG	814.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	8.26360985458981	8.4464800735332	7.921047888069	8.0372993931327	8.19971101813425	8.28590626603575	-0.0825514828037127	0.731823343202822	0.931535693390145
Merged-chr14-26440794-2	chr14	26440294	26441294	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	83247.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	6.62102330528687	6.77172066750553	6.48245270927823	6.86957532732957	7.05193508088022	6.7973236073891	0.435038689160209	0.097825224824319	0.417064164942457
Merged-chr3-84259813-4	chr3	84259317	84260317	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271727)	promoter-TSS (NM_001271727)	-38.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	4.19686237511928	4.20833308360218	3.89005962135733	3.56027410719033	3.57845973986456	3.90978007471352	-1.37363192652895	0.0120526801132917	0.114624427459736
Merged-chr9-40320645-2	chr9	40320145	40321145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357622, exon 1 of 17)	exon (NM_001357622, exon 1 of 17)	678.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	7.91812076038449	8.04279087018136	7.49555066679977	7.15332529019426	7.34154159602399	6.75160480294109	-1.06501495742695	0.000211161392353624	0.00523081784309625
Merged-chr7-133776438-1	chr7	133775938	133776938	+	766.0	f0_balb.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	365.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	6.22382092927825	6.1403146415964	6.11135274036485	6.35210332285008	6.10744839049903	5.83136289132258	-0.0646506188150607	0.831785683114939	0.960487873555148
Merged-chr2-122032190-1	chr2	122031690	122032690	+	747.5	f0_c57.idr	intron (NM_001256055, intron 2 of 7)	intron (NM_001256055, intron 2 of 7)	3607.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	2.49146686497964	2.46378564166861	2.54774155545167	2.77372751409709	2.96084346229867	3.10720784535818	2.6737672282801	0.00136039557822829	0.0229373445335804
Merged-chr15-74968377-4	chr15	74967870	74968870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13264.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	7.11917438382015	7.16195751535021	7.19177827101694	7.22034199299015	7.31240686513693	7.13856730675436	0.11195539477065	0.631014788357343	0.894974662240063
Merged-chr13-60479957-4	chr13	60479466	60480466	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121981.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.05155866156971	3.8307407075885	4.22360626048162	4.88109217537009	4.9653484250488	4.76370635478585	2.20764665133535	1.73452720878273e-06	8.77364984731873e-05
Merged-chr1-136624856-4	chr1	136624343	136625343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177643)	promoter-TSS (NM_177643)	-58.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	7.31592808473559	7.0566773344015	6.8289180497244	7.19899337380621	7.07781347114427	6.77552522409124	-0.0823917412218933	0.765535559082497	0.942148336413151
Merged-chr9-57643979-4	chr9	57643501	57644501	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1652.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.70366864270984	5.52315781907329	6.12812635936815	6.22759517091335	5.83323740106501	6.18817503023575	0.511335809947955	0.136494367408155	0.493594108201959
Merged-chr2-38469371-4	chr2	38468892	38469892	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42305.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	3.1242106252729	2.90050599974841	3.02095745841889	2.92987641398464	2.78934920212089	3.09307171165856	-0.385656546152434	0.580154709034605	0.87276422265422
Merged-chr5-135574200-2	chr5	135573700	135574700	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1151.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	2.28781514773438	2.43514461626441	2.46293458792452	2.24776334965181	2.27547835540646	2.21052299217571	-1.0086185915065	0.241484142229097	1
Merged-chr8-109872472-3	chr8	109871949	109872949	+	903.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 1 of 18)	intron (NM_001122594, intron 1 of 18)	3846.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	3.63476761362985	3.46610203878696	3.91650956864145	3.32121908605325	3.23697414530499	3.38682754084849	-1.37599026111859	0.0248290453757832	0.186241342074116
Merged-chr2-164769762-4	chr2	164769242	164770242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026785)	promoter-TSS (NM_026785)	-187.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	4.49886372466209	4.57966052446736	4.54671092273906	4.63903006125209	5.08885508976794	4.57141417862713	0.613315140428493	0.159216240042191	0.531176171822728
Merged-chr3-15428530-2	chr3	15428030	15429030	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2103.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	5.54488311369131	5.95686760638611	5.64227419259249	5.56173971730408	5.02935997462572	5.48009488023334	-0.685944630786803	0.0637623686845288	0.329042216404573
Merged-chr7-128359316-4	chr7	128358819	128359819	+	914.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58853.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.17688565783031	3.88407005971881	4.44171644272854	3.69942531136198	3.55684639901807	3.69909248961742	-1.67561015494965	0.00258933968531403	0.0376667441495822
Merged-chr8-46833395-2	chr8	46832895	46833895	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	93650.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.81066188033794	3.83859054655759	4.47777713368267	3.85727867098144	3.55573351707845	3.92462772098578	-0.873383933839659	0.132670821200925	0.487461691069456
Merged-chr4-99936932-3	chr4	99936419	99937419	+	634.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	7468.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	4.80481274247056	4.73873505578983	4.93901717260655	4.54568677693772	4.67782555318682	5.06835008128315	-0.121367527388134	0.7717349594552	0.943614978016208
Merged-chr6-72161069-3	chr6	72160625	72161625	+	763.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37928.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.27585999532645	6.25756760717817	6.29275969782315	6.05706459567046	5.96849702192373	6.46112312790462	-0.182051565593575	0.544091619743277	0.857551302506722
Merged-chr15-91251762-3	chr15	91251276	91252276	+	633.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-59769.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	2.48499317699143	2.5202075855077	2.58852373763908	2.67711176717552	2.47670937272871	2.89605688812796	0.909346033482025	0.251262974229311	1
Merged-chr11-115579172-3	chr11	115578674	115579674	+	754.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002929, intron 11 of 18)	intron (NM_001002929, intron 11 of 18)	14730.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	3.94960365490002	3.88273053444521	4.6829259121009	4.63058619135034	4.46434454836243	4.63876571381654	0.93174092113778	0.0784700373266907	0.369927849275789
Merged-chr11-75578750-2	chr11	75578250	75579250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-9329.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	2.29479794613239	2.29867436473695	2.38623488095948	2.39001443818761	2.34591128154193	2.52248653812258	0.605724206240896	0.459952327455436	1
Merged-chr13-96670956-4	chr13	96670471	96671471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-35.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	8.28311351681829	8.54407674906254	8.02914095155817	8.29121433057407	8.30349711623102	8.12062609468804	-0.0928285003032918	0.695278754104883	0.919230570201314
Merged-chr8-46861284-3	chr8	46860750	46861750	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121505.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	2.57313634280982	2.71728066997815	2.7614118706098	2.63600041507255	2.73219506449729	2.58398269697629	-0.153785534959462	0.839108994251823	1
Merged-chr16-92801800-4	chr16	92801292	92802292	+	931.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	24282.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.83056954218497	5.00777674739768	4.84139781764304	4.51969016796618	4.46567369186137	4.83333675025662	-0.688122957857999	0.0953025101462863	0.411452875227115
Merged-chr1-121441230-3	chr1	121440736	121441736	+	933.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 3 of 23)	intron (NM_029955, intron 3 of 23)	10169.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	4.87147384044147	5.07812726386744	5.50616365879524	4.84665755038792	4.46810602067297	5.41394259047967	-0.441395899903288	0.355466416160242	0.742392248082664
Merged-chr12-32821542-2	chr12	32821085	32822085	+	943.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	1250.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	7.7711393378497	7.87550816944438	7.31567157488964	8.00264163066575	8.26450434970567	7.713122753358	0.478690351740997	0.0813623509075016	0.377347889990045
Merged-chr11-97718042-4	chr11	97717610	97718610	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	14676.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	5.27062087214873	4.79951968916494	5.14722120014387	5.13928840859775	5.07948719881979	4.80953279095746	-0.129009971807734	0.746699739105817	0.936300236930265
Merged-chr4-59349919-1	chr4	59349419	59350419	+	721.5	f0_balb.idr	exon (NM_001163288, exon 12 of 17)	exon (NM_001163288, exon 12 of 17)	88714.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.51810524737089	5.50062072437746	5.37189975189196	4.62897018290376	4.33122089893275	4.74510168925127	-2.00273138413421	4.1037655817938e-07	2.47260048175162e-05
Merged-chr14-87486089-2	chr14	87485587	87486587	+	627.25	f0_c57.idr|f1_balb.idr	intron (NM_001253755, intron 8 of 11)	intron (NM_001253755, intron 8 of 11)	69504.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	3.06555062004372	3.40034931170699	3.19668731360618	3.19924701845526	3.25410995517097	3.48812419027883	0.334133510132398	0.604791624879661	0.883226183914895
Merged-chr17-65607705-4	chr17	65607176	65608176	+	903.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	5879.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	5.20394714244514	5.27988993188796	5.33352357366602	5.31662954955397	5.22038880243165	5.23977193175316	-0.0225806060990931	0.947677972604171	0.988008807662239
Merged-chr9-65583242-4	chr9	65582755	65583755	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3168.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.89683300075338	3.94131683437	3.75356135331341	4.30787960234826	4.09995004161393	3.98690198619994	0.7961022924466	0.117113755660739	0.457001268899775
Merged-chr17-23599220-4	chr17	23598734	23599734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011747, exon 1 of 6)	5' UTR (NM_011747, exon 1 of 6)	253.0	NM_011747	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	5.33453220098506	5.50636022846918	5.95030048128329	4.76721210093599	4.90572341658341	5.17351640397997	-1.33297221053328	0.000758419995885644	0.0145641844028739
Merged-chr11-70236846-4	chr11	70236374	70237374	+	871.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177606, intron 2 of 3)	intron (NM_001177606, intron 2 of 3)	1040.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	6.40313615881418	6.11754379295308	6.105476416005	6.4364747342262	6.48447245448083	6.65401094480351	0.49341093192867	0.0818743479849427	0.37857705897487
Merged-chr1-172191690-4	chr1	172191185	172192185	+	955.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151641, intron 11 of 13)	intron (NR_151641, intron 11 of 13)	15119.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	4.77540945380283	4.49255413922121	5.01121911090665	4.92441943414792	4.76653618968333	4.86784979418012	0.196936053148365	0.635731006440075	0.896757062179863
Merged-chr6-4797009-3	chr6	4796526	4797526	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49720.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	4.10414899359787	3.75063480483261	3.85454511971861	3.61826300586109	3.90087705555982	3.82221890502929	-0.39290010760029	0.469898795902596	0.819160273395973
Merged-chr10-44458743-4	chr10	44458248	44459248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	0.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.12072424520728	7.44458777995335	7.24488549327387	7.29139709200367	7.49245515780574	7.45551801194463	0.202922650536345	0.403575602205912	0.778882003719199
Merged-chr12-12289381-4	chr12	12288868	12289868	+	914.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27229.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.95612790835636	5.33312452335555	5.11637045701459	5.57823806368559	5.31317833283355	5.82517691669707	0.841627205824043	0.0255381625941061	0.1894562179423
Merged-chr17-23747028-4	chr17	23746536	23747536	+	935.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	3.09519483904495	2.98201989462571	3.07990804770724	2.98467027100189	2.77636975680359	3.36862505025479	0.0358962256853332	0.960102821299323	0.990335445597503
Merged-chr8-84665434-2	chr8	84664951	84665951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2599.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.7952373676192	5.45476267849816	5.85413210608814	5.38836622113248	5.50280122106954	5.74793880442895	-0.296304163440679	0.387338968379695	0.767583116195701
Merged-chr16-91886104-2	chr16	91885605	91886605	+	555.25	f0_c57.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	45525.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.52990644830858	2.64126415348538	2.73823505506631	2.55659578956684	2.53339116763232	2.43071393642164	-0.73151212989212	0.354697501629638	1
Merged-chr6-115507572-4	chr6	115507075	115508075	+	937.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-37129.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.92653792752257	4.13259627658193	3.8978066843975	4.20573909849218	3.8582101331203	4.25212934574351	0.331166984737633	0.519163867940952	0.845645439543914
Merged-chr2-51376291-3	chr2	51375779	51376779	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61621.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	5.01494926397698	5.22874312815229	4.75273262017186	4.4051138300273	4.37871665931285	4.57057722403726	-1.35460946355451	0.00134882063066541	0.0227837326505091
Merged-chr13-20185716-3	chr13	20185209	20186209	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	95202.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.23827162960705	6.27692611451102	6.1659867549515	6.23516205768344	6.4968797234805	6.09281106559621	0.113826369399498	0.695270351037478	0.919230570201314
Merged-chr7-100530899-4	chr7	100530382	100531382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6218.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	7.13429428309115	7.39333814333618	7.01176187905762	7.17960121155683	7.58497953299092	7.02789341317846	0.15165496689691	0.586740180769803	0.875655897836385
Merged-chr5-148453554-2	chr5	148453054	148454054	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53650.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	3.94073148959055	3.72466109412991	3.83014968621927	3.9725309188487	3.71107685396242	4.09062005882081	0.281323861012308	0.59611068616411	0.8798867145239
Merged-chr8-104591371-4	chr8	104590867	104591867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024606)	promoter-TSS (NM_001024606)	-101.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	6.092796138304	6.17863473642485	5.97656357359866	6.29481363516792	6.19142861555587	6.03771041469124	0.157091780984059	0.58650990812484	0.875566335987149
Merged-chr6-136988723-2	chr6	136988236	136989236	+	720.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	34213.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	2.60531249329962	2.7108903250783	2.62395119917215	2.88563538627056	2.91580797777616	3.12181248391428	1.70171940305655	0.0238432940225571	0.18146463084505
Merged-chr7-127969853-2	chr7	127969353	127970353	+	694.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347649, exon 3 of 15)	exon (NM_001347649, exon 3 of 15)	2374.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	3.49171722780735	3.51261312574405	3.45367056257574	3.5257955734039	3.62999737338604	3.97343901982546	0.793879528629064	0.170244784770754	0.547594729259149
Merged-chr1-154074267-4	chr1	154073777	154074777	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126910.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	5.35812403286879	5.03651374036285	5.67562419332424	4.94672014893718	5.16535234401376	5.42842518080795	-0.36840640386063	0.356071949932176	0.742948288822601
Merged-chr7-132859871-4	chr7	132859378	132860378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	653.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	7.60697855218347	8.06556383464381	7.91681838930108	7.99788112945892	8.06860276510089	8.06853078174155	0.237990861775839	0.311664722375918	0.706631105711982
Merged-chr3-61363276-3	chr3	61362753	61363753	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1254.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.73530825950675	6.83832155807554	6.95308001674014	6.86044082733076	7.11431169525295	6.98403297812786	0.238364712927415	0.344315610109251	0.732980075743821
Merged-chr2-27725113-4	chr2	27724555	27725555	+	821.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	14472.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.24214939465718	6.56959248272945	6.53615226833895	5.98215569379461	6.11699851604415	6.12027075254916	-0.634042468240945	0.027943654410252	0.199685410398821
Merged-chr6-116071121-2	chr6	116070621	116071621	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-76116.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.17346932876123	5.32687663273152	4.8277881659559	4.7672909523513	4.84100654434067	4.93308152593785	-0.631495500731369	0.109330619596185	0.441790725633425
Merged-chr5-114897609-4	chr5	114897071	114898071	+	879.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011854, exon 1 of 6)	5' UTR (NM_011854, exon 1 of 6)	637.0	NM_001359181	23962.0	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	4.9615925804353	5.13613098539553	5.06300636662325	5.54693469362081	5.86857227616004	5.36823638517115	1.12090957164142	0.00199902590658619	0.0309806197867804
Merged-chr10-68276525-4	chr10	68276025	68277025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	2201.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	8.14403772078464	7.94371712811954	7.80454304269433	8.21192337650842	8.42020276827265	8.16595841034827	0.420359198298314	0.0646685115045355	0.331338516334322
Merged-chr10-95525141-4	chr10	95524627	95525627	+	952.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	9965.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	4.61379852574554	4.21544801659315	4.37347574686193	4.57305033300309	4.33904209702006	4.60842047459502	0.230422324348964	0.613041882221854	0.886978895339216
Merged-chr8-25096981-4	chr8	25096492	25097492	+	958.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	4819.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.05022647905786	4.76965948482673	4.7686112068003	5.30181560152932	5.04517920444416	5.16521372584816	0.63180186847164	0.10073945752159	0.423286414777412
Merged-chr3-144585103-6	chr3	144584581	144585581	+	939.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	14654.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	6.07522460108829	6.01327487091227	6.03423617611477	6.32582283916642	6.30371398546288	6.47005989660071	0.543036718277355	0.0510289968385494	0.28783848663294
Merged-chr13-43512949-3	chr13	43512442	43513442	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31969.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	3.48623504615694	3.31692175786756	3.72704900533617	3.17218071843165	3.08577247700151	3.33903620940462	-1.27597541389369	0.0463594991381748	0.272478717545331
Merged-chr4-53386427-4	chr4	53385904	53386904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR89|LTR|ERVL?	-54009.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.17560072757686	3.43896407951195	3.24141545565085	3.4373512532404	3.27169975472247	3.371383474634	0.25837862800054	0.676305392419364	0.91250233650771
Merged-chr2-25580691-4	chr2	25580118	25581118	+	810.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005424)	promoter-TSS (NM_001005424)	-519.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	2.76162710459967	2.65318442079145	2.90343498194827	2.83497751964149	2.41752473259024	2.60584174222919	-0.777354386356668	0.334178782489992	0.724803152263249
Merged-chr17-47437064-3	chr17	47436575	47437575	+	724.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 1 of 4)	intron (NM_145489, intron 1 of 4)	300.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	3.39325626912945	3.17945664137251	3.23013397072434	3.08802666226745	3.33441368064171	3.18475738035895	-0.249017705255725	0.697944060572266	0.920123730782958
Merged-chr13-94143498-4	chr13	94143029	94144029	+	889.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	85733.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.89907007738795	4.46285944816653	4.34251749910909	4.66188940807393	4.50545554415909	3.98664577209895	-0.428183241272229	0.413197707477758	0.784804663131881
Merged-chr2-145837872-2	chr2	145837372	145838372	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	51756.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.37372927841667	3.14657873627094	4.17957791434818	3.8024126724961	3.43748929561333	3.50775270041218	-0.194042472418558	0.784698689012329	0.947725429960306
Merged-chr15-73629602-5	chr15	73629083	73630083	+	835.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4839.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.4965415416086	4.31237802577872	4.49119567702785	4.35699232434922	4.07301798877257	4.51712018349854	-0.305836104466319	0.510463666976223	0.840886591313675
Merged-chr10-25131018-3	chr10	25130523	25131523	+	774.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69147.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.14934496085777	3.36124833602433	3.34918203771916	3.3430688713067	3.0144877364507	3.25228719284764	-0.340148485006682	0.598709172949049	0.880808927175713
Merged-chr3-27280583-4	chr3	27280096	27281096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36481.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.61754768515987	5.77091766947289	5.40606540161365	5.69000553029036	5.92798069655406	5.78521302202846	0.348485646386199	0.286081168883283	0.68342985932029
Merged-chr1-31050442-2	chr1	31049967	31050967	+	840.333374	f0_c57.idr|f1_c57bl6.idr	intron (NR_136907, intron 1 of 3)	intron (NR_136907, intron 1 of 3)	45987.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	3.13984801965305	3.20137961652111	3.36556833197082	3.96495358860289	3.63163390038728	3.6093592862233	1.96517897595587	0.00149455065016398	0.024664532030711
Merged-chr7-132707865-3	chr7	132707370	132708370	+	824.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69046.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.78528100103198	4.05113347867309	4.19889841441677	3.46787374837427	3.65491049865702	3.81204134197836	-1.1907988810419	0.0336109646903634	0.223980542203525
Merged-chr10-40133223-4	chr10	40132726	40133726	+	781.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9028.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.29526264863479	4.05829151149116	4.2296433146537	3.83597588634443	3.68816882599883	3.81800599838965	-1.28601619998182	0.0118209181007615	0.112978974652902
Merged-chr12-102438149-4	chr12	102437658	102438658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1655.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.34635737228643	8.55292273687069	8.05864285990529	8.42729031911159	8.67127352600332	8.11436238401401	0.125965494163295	0.625358418669321	0.892493785592319
Merged-chr10-80329949-4	chr10	80329454	80330454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	-191.0	NM_001204931	70335.0	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	3.0993138737163	2.72246238419182	3.02305401514965	2.78226170939101	2.84641972797126	2.97876701125174	-0.42516929717294	0.557410082115322	0.864220356872843
Merged-chr19-4233072-2	chr19	4232572	4233572	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132280, intron 2 of 2)	intron (NR_132280, intron 2 of 2)	657.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	4.51849599884388	4.409758318643	4.55719707484787	4.35928338724826	4.56106702134346	4.45728050735649	-0.0660990956567323	0.878092352262753	0.971816559882595
Merged-chr17-42860575-3	chr17	42860078	42861078	+	720.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	15846.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.15204699718753	4.36718019837431	4.52897446037841	4.47023178130572	4.24167481581907	4.47441817967414	0.111308871252018	0.808488261299381	0.954683711776353
Merged-chr12-76957350-4	chr12	76956813	76957813	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4935.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	7.50310154840906	7.71261735574938	7.36754247487877	7.36004900698394	7.83687626893297	7.02969656135799	-0.10698268858752	0.717290477388047	0.927005250411664
Merged-chr6-71980258-4	chr6	71979778	71980778	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009088)	TTS (NM_009088)	62250.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	5.04943580113596	5.09064095548372	4.96518286680453	4.91335539665252	4.88347596398989	4.8430216982073	-0.344925279911721	0.355182482256585	0.742166984435213
Merged-chr12-105782183-2	chr12	105781710	105782710	+	589.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030187, exon 18 of 18)	3' UTR (NM_030187, exon 18 of 18)	-2487.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.13723103924402	4.15980211064526	4.12283277282249	4.33162212643729	3.78672548759664	4.36786709206081	0.111523101433157	0.829430917164285	0.960065767401243
Merged-chr2-52378009-3	chr2	52377496	52378496	+	902.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-39198.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	5.25251523052353	5.42870048828857	5.04725422178249	5.82637398332407	5.86035344451614	5.19114704373929	0.78366984402322	0.0424513979187106	0.258213170908409
Merged-chr10-70035865-1	chr10	70035365	70036365	+	544.0	f0_c57.idr	Intergenic	MTD|LTR|ERVL-MaLR	-61256.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	3.36488701442482	3.45530020996565	3.8420736946825	3.90513505175202	4.14827459812899	4.22764502107716	1.77113170695383	0.0020499887929583	0.0315304138347816
Merged-chr7-80998090-7	chr7	80997608	80998608	+	963.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	4424.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	5.96205784353452	5.94081531468262	5.78416275313673	6.17592005245931	6.33663433348015	6.06856329285698	0.518663261711022	0.0784570177560833	0.369915461326318
Merged-chr8-64733748-4	chr8	64733255	64734255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025436)	promoter-TSS (NM_025436)	-177.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	5.60212435341949	5.89940625795882	5.41010029811063	5.71829129104326	5.39515900690798	5.47421296156766	-0.24115896384685	0.491253046473817	0.830448151501811
Merged-chr10-78412422-4	chr10	78411943	78412943	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	600.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	7.57950452125029	8.07140342263876	7.33126263755907	7.6152378372064	7.49659091707265	7.45576318787543	-0.266431012539565	0.336849517170259	0.726861060604748
Merged-chr5-99340632-1	chr5	99340132	99341132	+	655.5	f0_balb.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-87705.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.01598677347465	8.27557761339708	8.20212123941151	8.24961447323585	8.66164823899446	8.07117451248175	0.268014154313786	0.285676095581695	0.683152802436807
Merged-chr14-20885159-6	chr14	20884504	20885504	+	896.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-44394.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	4.68555146508343	4.79489697382014	5.02510149977529	4.65046296776855	4.44229919294613	4.44515136938888	-0.753957516101731	0.0741231867193803	0.358166861147801
Merged-chr18-46525115-4	chr18	46524617	46525617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 1 of 2)	intron (NM_173423, intron 1 of 2)	854.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	8.55680435388612	8.62161925658771	8.23214325272612	8.38830185020148	8.66092396130806	8.25466745230039	-0.0479381199733547	0.84022501929079	0.962819298477451
Merged-chr15-68134822-3	chr15	68134331	68135331	+	994.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 9 of 13)	intron (NR_152182, intron 9 of 13)	124025.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.91943080845831	3.88648013950192	3.6997288677236	3.62107348548611	3.8866265407978	4.06660417816413	0.0711006930107867	0.895746429147202	0.975665889379756
Merged-chr6-124898124-3	chr6	124897622	124898622	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-9922.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	4.32046907556658	3.60143228949978	3.89280157380474	4.07644585129419	3.78378773139559	3.69162870478951	-0.347384988901112	0.555917002950682	0.863466091383778
Merged-chr3-41618610-4	chr3	41618093	41619093	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53713.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.10583451165269	3.9617433773173	4.18980908710511	3.75802723807647	3.62801160287757	3.93845054202529	-0.980988402266641	0.0602191187624857	0.317728010996667
Merged-chr1-144314667-4	chr1	144314155	144315155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-65551.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.45510963578728	6.4655188473686	6.41629179797659	6.63069775518241	6.48880699841845	6.34010639830171	0.0804158927471217	0.764330133194403	0.941979298344481
Merged-chr12-86817761-4	chr12	86817249	86818249	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67065.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.09695439038143	3.95090700674681	3.78265305821721	4.55862131000395	4.43244550782605	3.91553117898855	1.06275632129826	0.0470493459123197	0.274651464478202
Merged-chr7-101033530-1	chr7	101033030	101034030	+	749.5	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21477.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	3.3978910124155	3.32860101948499	3.44136905725865	3.20531483257565	2.76652293826986	2.85274253175105	-1.97002672137839	0.00854185777398301	0.0902622078901313
Merged-chr19-42753829-3	chr19	42753332	42754332	+	969.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1057.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	6.52382186744853	6.60877762839261	6.64732154285602	6.54839889130063	6.72542726657567	6.38517470364708	-0.0317593645264992	0.906033877485368	0.978576016264467
Merged-chr10-80678338-4	chr10	80677840	80678840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2047.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	8.71849896070313	8.76496806160946	8.60047932394105	8.57798333756025	9.03136006466062	8.59911344769962	0.0850736291919281	0.712246944569681	0.924998341872234
Merged-chr12-85342548-4	chr12	85342034	85343034	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-3172.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	5.58092976065004	5.40560555371996	5.77136392741156	6.59144451594794	6.83399803353249	6.71927262631767	1.93899349298892	4.82570396684341e-11	6.89926418682313e-09
Merged-chr6-54972493-4	chr6	54971990	54972990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	122.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	7.13475277848094	7.47542433053893	6.99603411154067	7.25591944596137	7.33904194357262	7.32925148198282	0.120147810469034	0.638833388924537	0.897815231997312
Merged-chr12-73445802-3	chr12	73445292	73446292	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9b|DNA|TcMar-Tigger	-36229.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	3.06466677940619	3.2384764065603	3.07966558871036	2.94071015805112	2.81428130962031	3.15173996831895	-0.753388529743232	0.274827193414541	0.672203259945391
Merged-chr6-97394692-4	chr6	97394194	97395194	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L1MEc|LINE|L1	64592.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.37754682086008	4.99132959495356	5.05272008642317	5.17490333477337	5.12367769450279	4.93227396055452	-0.145264977770547	0.702950510847418	0.922063625862567
Merged-chr12-3434393-2	chr12	3433893	3434893	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	RMER15|LTR|ERVL	7536.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	6.30697349401494	6.45434832173269	6.21930793907681	6.8082809893727	6.69577016032485	6.67156183261149	0.624366599196908	0.0189820982381222	0.156027109572031
Merged-chr5-113006517-2	chr5	113006017	113007017	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	9021.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	4.02826565681272	3.73326450377282	3.71437095864547	3.38830750587831	3.24531958832618	3.3948327768174	-1.85152039035125	0.0020671773607285	0.0317313010627773
Merged-chr2-126468007-3	chr2	126467498	126468498	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	23555.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	2.83114606304202	3.29645868921608	2.99172689256526	2.69632936547613	2.50956551545858	2.88391180485504	-1.8849323667119	0.0204782776530982	0.163966422762936
Merged-chr17-66519010-4	chr17	66518498	66519498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	672.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	6.96001706628779	7.13704008951886	6.91993992267523	7.36490960210055	7.14648161224203	6.99251480883683	0.253380410961172	0.317958833598952	0.711776126610212
Merged-chr2-91508228-4	chr2	91507677	91508677	+	776.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 36 of 37)	MLT1F2|LTR|ERVL-MaLR	-18585.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.8090399103218	4.77576482654164	5.33203279057999	5.40248484667317	5.6295342721113	5.95782762624258	1.37860789742645	0.000516631522726041	0.0107577266624095
Merged-chr19-10603368-2	chr19	10602868	10603868	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145496, intron 1 of 16)	MIRb|SINE|MIR	890.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	3.72361572320763	3.80102842868499	4.14710879648776	3.75616085619107	3.71238203397507	3.74786116141831	-0.499663093700788	0.355691332304552	0.742489966989298
Merged-chr13-99339397-3	chr13	99338887	99339887	+	787.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	5291.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.02194988990158	4.43223059100523	4.59421744191599	5.03876144687012	5.00659093090154	4.89207547289256	1.47582841776532	0.000969939306080119	0.0175946609505809
Merged-chr16-21590981-4	chr16	21590464	21591464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	103701.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.69014590437142	5.33654688161059	5.51206834627401	5.03514305687017	5.10266628879395	5.03201613551604	-0.924544645843105	0.0097968584846687	0.0990472558601002
Merged-chr5-138222280-3	chr5	138221839	138222839	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3565.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	2.79137359193497	2.65612791000373	2.81020254225475	2.47302123833415	2.43355964952381	2.37011965614021	-2.01384571951448	0.0174337442155092	1
Merged-chr17-78730086-2	chr17	78729545	78730545	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	6515.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	4.35020100072021	4.53120890684061	4.17138840350124	4.21138058100649	4.10534443574464	4.37716672947445	-0.376178420910368	0.42312923933368	0.791843504632545
Merged-chr1-135284047-4	chr1	135283547	135284547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145417)	promoter-TSS (NM_145417)	37.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	7.77629347336447	7.99530483138492	8.12838210451678	7.65191996890314	7.69295204891655	8.00839787822405	-0.260732666736902	0.278765878603609	0.676156572710949
Merged-chr9-59542726-4	chr9	59542242	59543242	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	3202.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	6.55634167089687	6.64804570348646	6.52374238124339	6.67289420207298	6.75524443743415	6.95108635899827	0.334237513094061	0.198315248211251	0.5866335516073
Merged-chr2-150851465-4	chr2	150850952	150851952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8882.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	7.42177103532561	7.2959394886049	6.93256861660703	6.97664914887642	7.22940562214821	6.87053001059454	-0.298482059396862	0.272619575175098	0.669899285664449
Merged-chr8-41018660-2	chr8	41018160	41019160	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 1 of 2)	intron (NR_015457, intron 1 of 2)	1192.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	4.75057697422753	4.81526256057833	4.91442416138315	6.46147749783502	6.41062755882067	5.88544261985581	2.80100529506138	7.50754274138952e-15	2.048156119428e-12
Merged-chr3-146157036-4	chr3	146156542	146157542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6868.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	6.9858955946526	6.80084069086188	6.92956689427102	6.87382756245248	7.12198894386013	6.39469649350795	-0.0920869769214876	0.756145155493808	0.939527320894303
Merged-chr4-36038965-4	chr4	36038463	36039463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-193759.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.58199935465588	3.49327958240398	3.59822974932565	3.5047977629382	3.71642294798488	3.50518537012378	0.10672719157951	0.850805711015476	0.964981271430729
Merged-chr9-90223239-2	chr9	90222739	90223739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 7 of 12)	intron (NM_194334, intron 7 of 12)	47530.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.31497651806679	4.16274762678867	4.4041984272019	4.92399281902452	5.03206989622042	4.60561903625552	1.43205093863825	0.00100266854792744	0.0180584511982568
Merged-chr10-82698494-2	chr10	82697994	82698994	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	-513.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	5.23604603423101	5.24016968080233	5.5251926179534	6.11320399109386	6.04399617111534	5.99389962003556	1.33528136053291	2.58803278591185e-05	0.000910164970626176
Merged-chr9-63988928-2	chr9	63988428	63989428	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	33131.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	6.04127438417062	5.71013843453514	5.79553165668876	5.59492312093021	5.46255747802479	5.26809224877775	-0.74514948115091	0.0264007742787312	0.192985647560807
Merged-chr8-123477931-4	chr8	123477453	123478453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	91.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	8.43113764758998	8.60724141547573	8.21407290655269	8.5673801060857	8.55477770300138	7.9829710431601	-0.0393775850737705	0.879104991396135	0.972074795996392
Merged-chr4-46507446-4	chr4	46506921	46507921	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029077, exon 6 of 6)	exon (NM_029077, exon 6 of 6)	18092.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	3.62125908922066	3.38580281405924	3.37129604039914	3.17436314844273	3.38004858333118	3.55102478280492	-0.355539652403507	0.565527209437494	0.866815789886591
Merged-chr11-57962721-4	chr11	57962200	57963200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46364.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	7.07698197541942	7.41474646819427	7.17976165666797	7.09168720872672	7.49775531398859	6.88057237999386	-0.0572629404046937	0.839725377834868	0.962784121274377
Merged-chr19-3371238-2	chr19	3370738	3371738	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 11 of 18)	intron (NM_013495, intron 11 of 18)	-17619.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	2.66139079271537	2.58399367524114	2.65026242771391	2.31937699461447	2.38875024012279	2.60046062353565	-1.19919055174028	0.1445880471748	1
Merged-chr16-17693618-2	chr16	17693118	17694118	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	29282.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	5.03585738874304	4.69106541852507	4.54331060278608	4.71406600782866	4.52643650673951	4.38068291247151	-0.542843653260347	0.220139324961663	0.614507907782981
Merged-chr7-28435835-4	chr7	28435359	28436359	+	809.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	CpG	332.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	6.60005943891121	6.42359456857156	6.28894707206216	6.98553775824558	6.45857575487315	7.00246399855951	0.61317409271975	0.0419023202409588	0.256136186991603
Merged-chr2-152669459-4	chr2	152668998	152669998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159553)	promoter-TSS (NM_001159553)	37.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	7.44892623399693	7.06097115970073	7.40981295934336	7.30467259669319	7.10084516261135	7.21234226744326	-0.162031731023115	0.521732059580924	0.847186270857377
Merged-chr2-32506854-4	chr2	32506355	32507355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28504.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	7.63348618242264	7.71384167828716	7.51522492183591	7.65595321234606	7.92073023995316	7.14952192838061	0.00132390686531369	0.996207978110605	0.998961028701257
Merged-chr2-160348285-4	chr2	160347783	160348783	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18782.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	3.08373355413334	3.30297875001083	3.39892031118552	3.70333084222687	3.74008789046812	3.47170343175984	1.46798993317024	0.0175378934670775	0.14792630913417
Merged-chr13-81225209-4	chr13	81224700	81225700	+	959.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	261126.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.96502386283053	5.07841366594404	5.08797981166563	4.38666558343483	4.61318362090386	5.15134491506587	-0.660503706376777	0.134339403004038	0.49007036907488
Merged-chr9-104272336-4	chr9	104271831	104272831	+	798.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9401.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.99215030852683	6.03722149171647	6.33742169088999	5.9496473313751	5.93444416324103	6.16702795296753	-0.184694062813969	0.541028800779748	0.856684702949271
Merged-chr14-55091674-3	chr14	55091155	55092155	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	CpG	393.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	5.38607912483884	5.3185738606354	5.24949068026383	5.19202648814928	5.01295896902143	5.18248925127641	-0.403491414514223	0.251181821599773	0.648731936769727
Merged-chr4-142063130-4	chr4	142062622	142063622	+	919.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-21176.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.11495837262924	3.70698838482649	4.23508502963802	4.41561605765146	3.95875430495642	4.25899874554017	0.532198469686426	0.318151613660242	0.711883984008282
Merged-chr8-84063993-4	chr8	84063438	84064438	+	799.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-2898.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	4.66099943329887	4.72986518868356	5.24138756133208	4.7182995210682	4.67154135289083	5.03173880093516	-0.185620336990063	0.669068697857722	0.909505510225091
Merged-chr1-160906323-4	chr1	160905838	160906838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-73.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	7.43117080255568	7.57191842884777	7.16594598703701	7.39357220252551	7.01872948613415	7.14742370256358	-0.316725225251524	0.222685539950872	0.617620026273531
Merged-chr4-70420695-4	chr4	70420210	70421210	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10275.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	4.9352270636079	5.39347543766515	5.36179544360866	5.23348890294266	5.35080950868504	5.30334920004139	0.109541594540121	0.767099952098347	0.942573703853445
Merged-chr1-166381610-2	chr1	166381110	166382110	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	2443.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	2.89496121022107	2.72669092435408	3.00271412496046	2.6040315721814	2.5569078500361	2.72059503211158	-1.38076569089498	0.0707828519597463	0.348868437257914
Merged-chr2-132022861-2	chr2	132022361	132023361	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	B1_Mur4|SINE|Alu	7127.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	4.55139783586318	4.87854943529623	4.59434190139326	4.22147460288324	4.22008001027532	4.73680163452281	-0.701360407853703	0.133423227529436	0.488617574766485
Merged-chr19-8741569-8	chr19	8741075	8742075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019829)	promoter-TSS (NM_019829)	151.0	NM_001167799	56389.0	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	8.38572294221253	8.31027160785079	8.12716753444098	8.2724135238763	8.31153255733126	8.15529341992784	-0.0451335558582818	0.831861660640368	0.960522107234272
Merged-chr11-54464780-3	chr11	54464288	54465288	+	926.177795	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	26609.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	5.15733183578219	5.29420008554974	5.3794437659373	5.49742279933453	5.19035172238207	5.25635320889328	0.0901075409703027	0.799186787174423	0.952241087526368
Merged-chr1-171232029-4	chr1	171231536	171232536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	2313.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	7.13969705324908	7.17132843076314	6.91526410015631	7.18775906738794	7.62951222755886	6.64212802470584	0.219454774011464	0.493944727164034	0.831755865067393
Merged-chr4-139218603-6	chr4	139218048	139219048	+	943.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	24437.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.46467595016801	5.5491147955463	5.65149436243566	5.75187293999234	5.39342683342991	5.52050675527166	0.0161113929106579	0.961612498993171	0.990648883228567
Merged-chr2-26603910-4	chr2	26603419	26604419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026212, intron 1 of 5)	CpG	498.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	5.13601492241403	5.318518302231	4.4999440154396	4.40363853148499	4.33871628039751	4.65869860529683	-1.32874312361657	0.00420478812409044	0.0539848645327437
Merged-chr2-16212965-4	chr2	16212450	16213450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-143354.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.64225469951573	3.66792390195305	3.73682707665615	3.6162920199973	3.37759658636842	3.65341977082591	-0.471186640465266	0.40340002185044	0.77875989555314
Merged-chr13-101694791-3	chr13	101694276	101695276	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-2146.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.03367640225797	3.84839237984145	3.75516849749215	4.09114489533984	3.9684791665307	3.82695151357684	0.244387311127887	0.63783527477503	0.8973803061326
Merged-chr4-133875290-3	chr4	133874780	133875780	+	931.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	-549.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.51165151324347	5.54833719109748	5.83597125236782	5.02872003742398	4.64430189312049	5.10334885165876	-1.43601179062744	0.000163879219374162	0.00426355339680524
Merged-chr11-74834770-5	chr11	74834235	74835235	+	790.150024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	3811.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	4.88809700630502	4.85538314945011	5.10474270047542	5.26841440624867	4.84865470537128	5.16858697166212	0.329594409255172	0.398805812252105	0.775423220616012
Merged-chr3-153565726-1	chr3	153565226	153566226	+	723.0	f0_balb.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	159407.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	5.06080033872733	5.50116517101775	5.07995521410796	5.67861973205921	5.92097450230822	5.73474854182121	1.02957401532594	0.00423200092818816	0.0542499357930489
Merged-chr1-172048235-2	chr1	172047735	172048735	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	9361.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	2.71606560246405	2.72383287807019	2.85922500542426	3.40907466482861	3.23587138645176	3.12372916993943	2.54123974089889	0.000653668085846317	0.0129841045803534
Merged-chr10-8864027-4	chr10	8863526	8864526	+	646.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	22044.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.84324807167092	3.81884937890426	3.92951601748858	3.87120910464531	3.66519989666142	4.13398805318388	0.0973150306077178	0.855171686319011	0.966112719615049
Merged-chr12-54993804-4	chr12	54993319	54994319	+	912.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7483.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.59472192248902	5.23445721428493	5.15563826317994	4.81294608962675	5.10847250085162	5.1176142643652	-0.674195616446163	0.0794922736338811	0.372809892037424
Merged-chr10-68472988-4	chr10	68472507	68473507	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	68868.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	3.90113882735041	3.9513415894129	3.9124452774996	3.78500897029081	3.79972334557867	3.77854520226849	-0.4253272785252	0.405175196893049	0.780049815379569
Merged-chr8-64849693-2	chr8	64849193	64850193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178633, exon 1 of 15)	5' UTR (NM_178633, exon 1 of 15)	231.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	4.23582633260616	4.20788184155	3.90943392883822	4.44979759188155	3.9356400911476	4.08579446119742	0.118476178174898	0.819143250793946	0.957209935971094
Merged-chr9-21004002-2	chr9	21003502	21004502	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357899, intron 3 of 8)	ID_B1|SINE|B4	1265.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	3.72104645713398	3.78901333286349	3.82238054861156	3.93219521371555	3.55093016990923	3.57132418090724	-0.260415334340082	0.639780775093532	0.898199312621371
Merged-chr6-52486058-2	chr6	52485558	52486558	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6393.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	5.32879713196866	5.47138423202599	5.07459179908172	5.24802314928704	5.03177110714456	5.10419138641539	-0.374423300226191	0.307029258636629	0.703099001056797
Merged-chr15-31542743-2	chr15	31542243	31543243	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12|LTR|ERVK	-11706.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	3.49052137932288	3.65905892925151	3.41792035838721	3.30221505455822	3.35051551799069	3.19208028164844	-0.934787241388247	0.128073514768541	0.478707399984916
Merged-chr1-94078497-4	chr1	94077992	94078992	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-25939.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	2.68273416977375	2.74424908420442	2.70523303135387	2.43007236776324	2.44233792602608	2.59170839344318	-1.35667478323666	0.0872696015485259	1
Merged-chr17-80933784-4	chr17	80933297	80934297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131127)	TTS (NR_131127)	-10835.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	5.17381236099925	5.16436548447127	4.88340214303437	5.14114190314799	5.11597031334143	4.55719775286673	-0.231191054058404	0.581447183388722	0.873298754324848
Merged-chr2-73453923-4	chr2	73453425	73454425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	-36.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.84105394559788	6.83678437945881	6.99220488075244	6.96298114546307	7.36990303120243	7.33608189813296	0.530410345816841	0.0398140621349413	0.248246420541341
Merged-chr6-83109113-4	chr6	83108630	83109630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026744)	promoter-TSS (NM_026744)	22.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	6.21604223780323	6.38824582326172	6.68460547145017	6.43272611364525	6.59338696011081	6.53341059925618	0.145686665324279	0.608542408681173	0.885006356798728
Merged-chr14-65805915-3	chr14	65805435	65806435	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023209)	promoter-TSS (NM_023209)	24.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	2.76699680549662	3.0101721896894	2.87482314431073	2.89129346628199	2.68178638572192	3.00700515917365	-0.138088810724959	0.849356770117226	0.96465170861027
Merged-chr12-55301994-3	chr12	55301459	55302459	+	788.291687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	-678.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	6.97045839959063	7.35279451026717	7.12468211872166	7.19685480748241	7.57542595720713	7.02243831530799	0.202516498094305	0.466619989401668	0.817586753758551
Merged-chr16-49699146-4	chr16	49698645	49699645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028680)	promoter-TSS (NM_028680)	-149.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	7.55793408362899	7.7023325522321	7.21762079087583	7.40897383798585	7.56186695764782	7.1600285011462	-0.177329766200958	0.500656941807467	0.835182151490911
Merged-chr8-86871580-2	chr8	86871081	86872081	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	13677.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.2319266307924	5.46486993556993	5.29586151478023	5.52145222902853	5.87696438240114	5.54459164698959	0.628718981245458	0.0687826668020409	0.343101021477383
Merged-chr17-74456335-2	chr17	74455835	74456835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	Lx9|LINE|L1	2773.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.82435703919686	4.89680369161511	5.10911562291537	4.75907000881627	4.55833146736827	5.04469335510432	-0.343346495624657	0.405030392214468	0.779916895199977
Merged-chr12-3110031-4	chr12	3109531	3110531	+	949.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	-125760.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	9.10766711743602	10.7127709465226	10.3736938578712	9.33322614206557	9.45803873679563	10.9372192600195	-0.112152134640922	0.898171403569316	0.976261391798139
Merged-chr2-158497835-1	chr2	158497335	158498335	+	617.0	f1_balb.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4777.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	4.39222487775804	4.12297860187231	4.53275606714703	3.93545093160258	4.14079841983747	4.44274750004446	-0.463126529214086	0.352739444438213	0.74027004513432
Merged-chr11-75190164-2	chr11	75189664	75190664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144491, intron 1 of 12)	intron (NM_144491, intron 1 of 12)	319.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	4.31225360164913	4.1301833544119	4.01375560095134	4.39770754794343	3.97424832899691	3.98038632419103	-0.0795687412124502	0.875399221640213	0.971021655080903
Merged-chr4-11190734-4	chr4	11190241	11191241	+	925.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-610.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	3.51258852610492	3.21895767786605	3.41369049161278	3.8308371709894	3.80298124542795	3.48730123527872	1.20414405591815	0.0451761470128447	0.268194694680706
Merged-chr14-30619724-2	chr14	30619168	30620168	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	B1_Mur4|SINE|Alu	6540.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	6.63223234162917	6.46883849762214	6.38261403903832	6.51118221497857	6.49208032391257	6.36430346842734	-0.068806507319184	0.79811309485615	0.951930937621884
Merged-chr6-134531484-4	chr6	134530986	134531986	+	958.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	35427.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	6.28363068669623	6.25724025770403	6.25371668751625	6.37755279928643	6.34884604380055	5.78733537404382	-0.0862935624816155	0.781797351302038	0.946286689231939
Merged-chr11-72458151-4	chr11	72457637	72458637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 5 of 12)	intron (NM_153060, intron 5 of 12)	16810.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	6.19134374823248	6.26887350012616	6.3827443828597	6.17804881408907	5.91994415994773	6.10457838269733	-0.359274794083921	0.21193008921798	0.604389720110007
Merged-chr19-18624451-1	chr19	18623951	18624951	+	630.0	f0_balb.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7362.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.62500064215666	5.27071335631744	5.40937779657701	5.1857490803562	5.17993616988905	5.1168246317462	-0.561404359740906	0.113524708272907	0.450160309091308
Merged-chr2-18643439-2	chr2	18642939	18643939	+	815.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29023.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	2.9858093699934	3.16468142653344	3.00972636383358	3.16160183649904	3.13970037179055	3.2011293979277	0.468502959583084	0.47218837686786	0.8205191831757
Merged-chr17-57060461-6	chr17	57060003	57061003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025877)	promoter-TSS (NM_025877)	-640.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	5.55628257587033	5.13255771089335	5.06731836399463	5.15669998614881	4.97392458084388	5.29879765673892	-0.282606063041944	0.463982418646455	0.816078656690924
Merged-chr8-10668338-3	chr8	10667826	10668826	+	893.861145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	214128.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	2.2091300316849	2.20608576621553	2.52197282462731	2.07345605180524	2.00267928314377	2.08542293382117	-2.0487084054314	0.0344694267498963	1
Merged-chr11-83668315-1	chr11	83667815	83668815	+	554.0	f0_c57.idr	Intergenic	Intergenic	5731.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	2.90305295563312	3.15494818711362	2.92048377025543	2.90550721220031	3.01390175897291	3.11248309085151	0.0406166895101785	0.952959018167658	0.989359300570295
Merged-chr15-80458241-4	chr15	80457704	80458704	+	855.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163189, intron 5 of 5)	intron (NM_001163189, intron 5 of 5)	-19601.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	2.96565096034467	2.78545673845313	2.91686183535372	3.23518654002299	2.77042455600924	3.33325930784436	1.08981239855751	0.138719518409318	0.497674888449209
Merged-chr1-191273788-2	chr1	191273288	191274288	+	811.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	44330.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	2.33117518519598	2.36773653701537	2.21506041751026	2.42803244808651	2.48672819884626	2.67929741876242	1.40968805202632	0.101672954939959	1
Merged-chr17-66112470-3	chr17	66111951	66112951	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037757, intron 1 of 10)	RMER15|LTR|ERVL	806.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	4.54143489798722	4.83249536771384	4.80601504973784	4.85916883513457	4.75825357164084	4.35848813060258	-0.105124893263303	0.81041889218829	0.955045521890034
Merged-chr19-55709998-4	chr19	55709516	55710516	+	930.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7812.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.97010249604372	4.00986699752575	3.7082066154854	3.78635528164346	3.78159770438445	3.88474486261839	-0.302313035203345	0.564326730251659	0.866276147417766
Merged-chr9-48480641-4	chr9	48480125	48481125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357505)	promoter-TSS (NM_001357505)	-14.0	NM_001357503	104444.0	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	5.36958226585465	5.23189797127942	5.40891892059709	5.60096326631734	5.29585447686688	5.52894841432657	0.27502509930826	0.424027258825265	0.792383501074238
Merged-chr6-53854673-3	chr6	53854155	53855155	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33830.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	3.45319194406169	3.49925083480462	3.4691666771974	3.44469283723111	3.62822708244068	3.74766332505205	0.485055802367203	0.396199958983123	0.773419499989858
Merged-chr11-101173095-2	chr11	101172595	101173595	+	629.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007721)	TTS (NM_007721)	-1723.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	4.17146898016795	4.1992753676143	4.16484207299139	4.06720169941321	4.63499355213703	4.45546208718731	0.622304868259554	0.198446076222737	0.586749382074533
Merged-chr9-120051761-3	chr9	120051265	120052265	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009987, exon 2 of 2)	exon (NM_009987, exon 2 of 2)	16531.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.11808805778926	5.0118507156483	4.5468916024925	3.95898685105351	3.75122797754799	4.34777696671737	-2.37860459349101	4.0502543070759e-06	0.00018416041550993
Merged-chr16-59471862-4	chr16	59471367	59472367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025910)	promoter-TSS (NM_025910)	92.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	6.5433258130286	6.36523208681215	6.10321299470539	6.77877635248331	6.77084189150329	6.25625821157162	0.442853215561378	0.150544025106888	0.517451554903086
Merged-chr13-67128218-4	chr13	67127725	67128725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172392)	promoter-TSS (NM_172392)	-3.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	6.71001644534439	6.99138139750209	6.97664205755362	6.90574788909241	7.17163126138415	6.89482661832638	0.16578014959544	0.525501215123309	0.849027787811941
Merged-chr12-44919092-4	chr12	44918600	44919600	+	822.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144552, intron 2 of 5)	MLT2B2|LTR|ERVL	155383.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	2.92131463849404	2.74412914360175	3.16192121180319	2.7560029219814	2.94599653006398	3.12403711322811	-0.00420831989943412	0.995403032086642	0.998961028701257
Merged-chr7-30956074-4	chr7	30955592	30956592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 3 of 9)	CpG-12986	711.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	7.45254851160624	7.30376898024096	7.24725421882987	7.66624755063134	6.78925624549173	6.84106167762731	-0.246810958804249	0.443923748489588	0.803884349333946
Merged-chr3-106462200-2	chr3	106461700	106462700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20231.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	2.79783928587281	2.86928471633217	2.8951449754631	3.01497189648471	2.58529597634984	2.78262577072417	-0.243091153198215	0.745713571588952	0.936251303305737
Merged-chr19-61052613-2	chr19	61052113	61053113	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88227.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.83491147779444	4.97146503495043	5.41074151404162	4.75254150634246	4.69796778342151	5.06413205901295	-0.535034863727081	0.201874266189488	0.591490595965587
Merged-chr17-24168007-3	chr17	24167492	24168492	+	777.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361534, intron 1 of 3)	intron (NM_001361534, intron 1 of 3)	817.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	7.92708193204999	8.10157503665767	7.73062871918603	7.91304182750465	8.29077659204397	8.17801193173191	0.289502858616694	0.226717881579276	0.621670724273559
Merged-chr4-142089822-2	chr4	142089322	142090322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-5518.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	4.78491573582725	4.52410425435059	5.03401285600629	4.86940849973547	4.6754849866814	4.85862850179034	0.030008407624564	0.942853516550734	0.987202156853573
Merged-chr1-88568109-2	chr1	88567609	88568609	+	914.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	16592.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	4.35500939621431	3.93992542972319	4.58777582082247	4.44572835629699	4.8991968603668	4.90637051341502	1.11503078018592	0.0233734825807776	0.179043673369336
Merged-chr7-43648297-2	chr7	43647797	43648797	+	730.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 5 of 5)	RLTR20B2|LTR|ERVK	11864.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	2.65490188768207	2.83704681738146	2.94699205443283	2.71145175927945	2.98271116242961	2.77823273692327	0.0962433074230903	0.896929687009155	0.97587199430405
Merged-chr17-47368837-4	chr17	47368329	47369329	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146212)	promoter-TSS (NM_001146212)	-58.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	6.39785320728455	6.56501162208928	6.56981653072561	6.71012257027214	6.70448877736104	6.05471696337431	0.0431769948869033	0.889048796990596	0.974207858658472
Merged-chr19-5456587-2	chr19	5456016	5457016	+	822.916626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010235)	TTS (NM_010235)	1047.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	3.65068784406117	3.8014548458922	3.83988616038584	3.46583717622398	3.45850275537284	3.55141536083174	-0.969511368044214	0.0833214579595668	0.381991981713119
Merged-chr4-149697922-4	chr4	149697398	149698398	+	992.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008840, intron 1 of 24)	intron (NM_008840, intron 1 of 24)	810.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.77080989719616	6.92522595912307	6.92920579498788	6.95516055558291	7.14986759974407	7.02794408537419	0.269647228066651	0.27330119406543	0.670564260189198
Merged-chr7-44384123-4	chr7	44383617	44384617	+	834.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114116)	promoter-TSS (NM_001114116)	-9.0	NM_001114116	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	3.63817240124844	3.54262439527746	4.11873604987316	3.55876999122831	3.1468085979079	3.8852000711042	-0.742830395054548	0.265844663370386	0.663674403642054
Merged-chr5-99213442-2	chr5	99212942	99213942	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39485.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.25316543544479	4.14714792460673	4.38538942546501	3.83072841006955	3.8682739242629	4.10795948689099	-0.953150673134541	0.0539444635596051	0.297929836975151
Merged-chr2-156144193-4	chr2	156143698	156144698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164216)	promoter-TSS (NM_001164216)	-12.0	NM_010911	18041.0	Mm.283604	NM_010911	ENSMUSG00000027618	Nfs1	AA987187|m-Nfs1|m-Nfsl	nitrogen fixation gene 1 (S. cerevisiae)	protein-coding	7.34424034902615	7.5594483389145	7.18406767928656	7.07642153099701	6.9930317178355	6.85636015142969	-0.59461381843838	0.0178722596129851	0.150016642578156
Merged-chr9-108783757-4	chr9	108783261	108784261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12233.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	6.63405534513669	6.22531696766656	6.29322438686045	6.41396378617887	6.19604390806076	6.09499013294837	-0.257727347122756	0.389432615235123	0.769119665294917
Merged-chr7-63939124-4	chr7	63938621	63939621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-206.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	8.72825892212859	8.86411884897246	8.37790407314747	8.43130452938508	8.5692226020266	8.43328872708502	-0.273204604898503	0.230829641538548	0.626549431190327
Merged-chr8-119831624-5	chr8	119831115	119832115	+	842.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	8964.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.85754825147062	4.51574486970644	5.06458163493348	4.74099179535005	4.58907355836826	4.66769253980829	-0.362405475543864	0.396681413934765	0.773705892751785
Merged-chr17-17550238-2	chr17	17549738	17550738	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 11 of 17)	L2c|LINE|L2	74251.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.45020495804834	3.30700440523343	3.56639133804143	3.29543716676596	3.43035026911193	3.68526083584134	0.12519986680082	0.835572472063779	0.961787999211487
Merged-chr7-30285525-1	chr7	30285025	30286025	+	599.0	f0_balb.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-5104.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	2.89681684092987	2.75436396078778	3.17155115081685	2.81095616320581	2.5470944119909	2.78454413270325	-1.19067090738996	0.121657173242821	0.466619805991918
Merged-chr14-31337508-4	chr14	31336986	31337986	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360187, intron 1 of 20)	intron (NM_001360187, intron 1 of 20)	848.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	6.63301310792554	6.5863742955953	6.76609952942238	6.66150399965391	7.11508901535698	6.32376263764787	0.153285646204804	0.622676411065507	0.891241737245933
Merged-chr16-17209752-2	chr16	17209252	17210252	+	696.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	1617.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	2.79437659941935	2.55768989061748	2.93670893883202	2.78380805488238	2.71619134541627	2.64311228532133	-0.266336515684531	0.726472214871857	0.929867107699856
Merged-chr15-27784079-7	chr15	27783545	27784545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-102503.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.73262456307878	7.25599837141726	6.69228051502114	6.73329020668024	6.81607998067059	6.87515066937657	-0.189497428543365	0.508576225339927	0.839818423824339
Merged-chr2-18391884-2	chr2	18391384	18392384	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190817, intron 1 of 12)	intron (NM_001190817, intron 1 of 12)	946.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	4.49370267213446	4.80114881253428	4.92345689239036	4.52783888493239	4.40715369617257	4.49718575060181	-0.651980224050468	0.130901239689709	0.483569810071875
Merged-chr18-4280010-4	chr18	4279497	4280497	+	802.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	72956.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.40830652746628	3.35191580513615	3.30188929378535	3.55120862002923	3.5455689706059	3.69658143550074	0.892810148838131	0.12560904248316	0.474191879348443
Merged-chr5-65091698-4	chr5	65091213	65092213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15855.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	7.4290634661055	7.58032492998901	7.15754204291187	7.53995338423206	7.90432373587954	7.26607480534922	0.292277311631114	0.294517235100507	0.69132772549011
Merged-chr6-83003889-1	chr6	83003389	83004389	+	575.0	f1_balb.idr	exon (NM_033079, exon 5 of 10)	exon (NM_033079, exon 5 of 10)	29582.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.48254715799205	5.6994743364064	5.53590454869184	6.23128719917508	6.50115802420149	6.35459855838297	1.37416812300897	6.24117452625914e-06	0.000267550566708382
Merged-chr7-128622695-4	chr7	128622204	128623204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	11339.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	4.84259372991248	4.95686959914167	4.47463614301881	4.36409149090375	4.03078477060077	4.58550445684592	-1.10706773972758	0.0197893211108153	0.160289878192576
Merged-chr17-24526586-1	chr17	24526086	24527086	+	756.666687	f0_balb.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	1352.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	4.53472828950528	4.66028859317009	4.9469472454304	3.77749862937411	3.79582503393549	3.73875385286001	-2.73548416778981	3.48380895017953e-07	2.1456756115954e-05
Merged-chr5-135012934-4	chr5	135012456	135013456	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190437)	TTS (NM_001190437)	201.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	5.69750935816584	5.16753465830407	5.58590812462712	5.84680250706727	6.03666261521797	5.83302702340035	0.755044444609443	0.0282080515959027	0.20088459065319
Merged-chr1-58424579-2	chr1	58424079	58425079	+	728.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-491.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	6.09012180148556	5.72804721170713	6.0858640977795	4.79480992009043	5.04508454402401	5.04369017784963	-1.95378318712299	8.03010178051515e-08	5.8765937462894e-06
Merged-chr13-37130808-3	chr13	37130310	37131310	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80566.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	3.25352332978816	3.49204158306944	3.27684535773995	3.12296401204391	3.08110210792056	3.11251090435193	-1.03625049559975	0.106488041225946	0.43567002332228
Merged-chr14-32784401-7	chr14	32783929	32784929	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	6.41417279851792	6.44867978409662	6.30857137395456	6.5286965543181	6.49955262772549	6.42670314638496	0.148591987955176	0.57455033320635	0.870773088875341
Merged-chr2-130423870-2	chr2	130423378	130424378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	410.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	7.24577696016945	7.41902213248245	7.36827483897898	6.70958779442189	7.04507751882596	6.84862845815598	-0.69964073065689	0.00542153611968663	0.0648060878389435
Merged-chr1-57406694-4	chr1	57406156	57407156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302963)	promoter-TSS (NM_001302963)	18.0	NM_001302962	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	7.58075584182537	7.94675356862837	7.58141458083096	8.03303608918803	8.07298934167044	7.75088998584176	0.350310228236911	0.153384469168561	0.522293889843917
Merged-chr2-170173920-3	chr2	170173443	170174443	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31268.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.35065203567434	4.94806444058803	5.15877207117086	5.14570933097899	5.16712014802394	5.28670893102643	0.0689539418934664	0.851953134827758	0.96531854415899
Merged-chr2-59670059-2	chr2	59669559	59670559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	23290.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.32678859632066	3.42201553745854	3.38705693344781	3.43076109891537	3.20494443700342	3.40278627807976	-0.135054414042988	0.822886233147159	0.958181862154646
Merged-chr2-93588269-3	chr2	93587769	93588769	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54165.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	3.33923821328034	3.1925825550834	3.37052222776666	3.25138596371424	3.10046181799956	3.78620824259603	0.402261486057645	0.546974009763919	0.859168905101902
Merged-chr6-52160243-4	chr6	52159746	52160746	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131181, intron 1 of 1)	intron (NR_131181, intron 1 of 1)	1722.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	4.91335756200984	4.83227595176936	4.88842143477409	5.78794373241619	5.26756738186016	5.69764374558752	1.45339950073787	0.00012774561104856	0.00348849911523748
Merged-chr17-87284543-2	chr17	87284043	87285043	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1657.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.1726540952608	3.80619772945733	4.11495425580216	3.55669484029973	3.53328773633794	3.75336025620273	-1.40299902729591	0.0111737564169121	0.108742213326131
Merged-chr19-4298060-2	chr19	4297560	4298560	+	701.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	8162.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.60774629080874	5.84675396449207	6.17373316451786	5.95858222487681	5.95397870274959	6.15409108454025	0.23720551724269	0.46467914379275	0.816459397744841
Merged-chr14-70392769-7	chr14	70392253	70393253	+	996.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 16 of 22)	intron (NM_021308, intron 16 of 22)	36341.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	6.56365701998221	6.445502860632	6.32641419683804	6.12197412824641	6.20808104036817	6.38623960730325	-0.358400941781776	0.198373686326349	0.586719427645391
Merged-chr11-117663298-2	chr11	117662798	117663798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	U3|snRNA|snRNA	9009.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	6.70774698855265	6.91441355872072	6.80386931241798	6.54484037043858	6.85221189575372	6.62370309912433	-0.194204644088984	0.463294057114597	0.8157605781877
Merged-chr12-80014016-1	chr12	80013516	80014516	+	584.0	f0_balb.idr	Intergenic	Intergenic	-77752.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.59781083214221	4.16514374084557	3.80768507771388	3.56537044968147	3.5115836552674	3.61321596863686	-1.08134277194331	0.0624437945772466	0.324799853671535
Merged-chr2-27755614-2	chr2	27755114	27756114	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	45031.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.81767462698843	3.96849339908391	4.95664185940685	3.81987790680644	4.06339562033706	4.38799908110661	-0.66682990628362	0.48398339274873	0.826650962533214
Merged-chr9-40506636-1	chr9	40506136	40507136	+	678.0	f0_balb.idr	intron (NM_001357617, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	24747.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.54347003618151	2.55685936217488	2.59131578450503	2.26428628813588	2.3653173989755	2.47682314757642	-1.2385153302801	0.136336138720584	1
Merged-chr3-103968477-4	chr3	103967983	103968983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030676)	promoter-TSS (NR_030676)	-167.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	7.13963710681116	7.42427560952978	7.32630245505586	7.16014075691705	7.28770944634452	7.18671249773089	-0.129180789516606	0.590231965049731	0.877133359617561
Merged-chr11-117822756-2	chr11	117822256	117823256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 2 of 5)	intron (NM_001271729, intron 2 of 5)	-3163.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	3.11350987496527	2.66417939749881	2.91926704744012	2.88950577325111	2.85879635037045	3.10882232529246	0.186912414520539	0.800137604099917	0.952408432552781
Merged-chr16-57181379-4	chr16	57180879	57181879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-14047.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	6.24306641594822	6.38551911933684	6.2229207629613	6.15634964678024	6.42250652879603	6.28309860247558	0.0126190897631428	0.964223881441688	0.991383573363743
Merged-chr19-3320940-2	chr19	3320440	3321440	+	888.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2361.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	4.06302938469067	4.04489000209736	4.01632270011252	4.11443473138905	3.9835609773329	3.77160910811522	-0.214145827951795	0.670869110370075	0.910200344627715
Merged-chr19-10018192-4	chr19	10017695	10018695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347430)	promoter-TSS (NM_001347430)	1.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.31303324367601	5.06403930475064	5.20460311970716	5.42591622237607	5.37673215398962	5.16735821104672	0.276701558332379	0.435903555362723	0.799403653016169
Merged-chr12-84768331-2	chr12	84767831	84768831	+	787.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	MLTR14|LTR|ERV1	4781.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.99398389873094	5.71612655211004	5.94107134060327	6.05195113346201	6.23133751658395	6.0708796875856	0.415960107499184	0.165238890161548	0.54001097346129
Merged-chr9-119357518-4	chr9	119357006	119358006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199568, exon 1 of 20)	5' UTR (NM_001199568, exon 1 of 20)	125.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	4.51637534757556	4.50841206784617	4.25153354036059	4.37895539743424	4.26411476158535	4.53937469954608	-0.126770409899374	0.777999028311097	0.945295744103702
Merged-chr18-36560392-4	chr18	36559883	36560883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-220.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	8.49969649042895	8.41761972023817	7.94374816814204	8.36622218726148	8.41882956702676	7.94238465041526	-0.0706396748559081	0.78845906079836	0.948954880993192
Merged-chr1-154094483-4	chr1	154093977	154094977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106710.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.36946753779224	6.49531413992779	6.52698199429218	5.9400346081953	6.09495912237365	6.23798720717554	-0.619055348375258	0.0279739397403484	0.199798762052782
Merged-chr7-27227821-2	chr7	27227321	27228321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181593, exon 1 of 7)	exon (NM_181593, exon 1 of 7)	776.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	5.02354050764126	4.98100715029625	5.2652289699269	5.164124019023	5.13535236885167	4.95936333814796	0.0204470676095263	0.956049472963368	0.989807313282509
Merged-chr17-24206087-2	chr17	24205573	24206573	+	932.5	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-511.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	4.92057557937103	5.04352469012855	5.25445507834625	5.18777344201741	5.03371410409966	4.6603153036871	-0.177986069949125	0.659232158939604	0.905282710592665
Merged-chr17-28518959-2	chr17	28518459	28519459	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11902.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	3.88401230687854	4.00012266755399	3.81619504119658	3.3381937992377	3.29878542724253	3.97991361008039	-1.11302436842037	0.0788073162707018	0.370868463259694
Merged-chr4-47311660-4	chr4	47311156	47312156	+	777.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 39 of 39)	intron (NM_009928, intron 39 of 39)	-41566.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.78112704369974	3.83663273833113	3.59853417576048	3.52572117399862	3.64531969762305	3.87501187559457	-0.215377360858267	0.698833831689687	0.920452394037037
Merged-chr7-19876319-6	chr7	19875817	19876817	+	783.266663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11648.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	5.97173974136171	5.96483910158862	5.86511576312345	6.10302592733818	6.21117641913132	5.85006892813856	0.236784605859756	0.431156396263289	0.796688090876857
Merged-chr9-106369101-4	chr9	106368651	106369651	+	861.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153459, exon 1 of 3)	exon (NM_153459, exon 1 of 3)	519.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.8177400758531	6.28524043863331	6.23746296661371	6.06255272661179	6.03887170666862	6.11260612992353	-0.0995764587457113	0.746758367540227	0.936308940920199
Merged-chr5-64315315-2	chr5	64314814	64315814	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	84957.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.95594214924625	3.60269863925455	3.69678424543163	3.79641604747583	3.64107550725547	3.91869437895317	0.0640584018102988	0.907518385931129	0.978939051225517
Merged-chr4-36020212-2	chr4	36019712	36020712	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	L1Md_F|LINE|L1	-175008.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	2.32324173606687	2.54486725571559	2.54809706486597	2.21109279341014	2.22202432446156	2.62149078281172	-0.709805242546355	0.423707674897518	1
Merged-chr1-171887303-4	chr1	171886786	171887786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 8 of 8)	intron (NM_001289470, intron 8 of 8)	-30176.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	5.60342075249014	5.38881866621525	6.03814480961046	6.2965190499869	6.52766239191885	6.22486774681358	1.16456487783192	0.000457047709693627	0.00979398038325709
Merged-chr8-92852742-2	chr8	92852242	92853242	+	955.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2591.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	6.05410762474863	6.28417687806536	6.16610370670449	6.27305415107971	6.38325278411575	6.34734122210885	0.272421932547061	0.329039620488338	0.721134108525049
Merged-chr10-127578957-1	chr10	127578457	127579457	+	593.0	f1_balb.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	42191.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.98964240759518	3.4280614847038	3.90798726814864	3.6909666993663	3.4999338366275	4.15296996060983	0.0255100473776116	0.967168975648692	0.992479541792373
Merged-chr3-154597152-4	chr3	154596667	154597667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168358)	promoter-TSS (NM_001168358)	-30.0	NM_001357673	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	6.31383386924162	6.75445980481527	6.39990983214613	6.44256640176637	6.3531022857432	6.03355968505664	-0.352908297386795	0.248064962338575	0.645132606072547
Merged-chr10-67010626-2	chr10	67010126	67011126	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	5551.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.01759298771228	5.11258589375514	4.92455415121655	5.11506678303383	5.33377591192919	4.95256048105562	0.272681832096409	0.470038618138196	0.819264793771069
Merged-chr11-98193124-7	chr11	98192581	98193581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013634)	promoter-TSS (NM_013634)	-175.0	NM_013634	19014.0	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15	mediator complex subunit 1	protein-coding	6.74517737665876	6.75715885629516	6.86666786032679	6.9809715702663	7.09991916225435	6.75800035167235	0.273038526446449	0.284788771570553	0.682457480121006
Merged-chr7-47052647-6	chr7	47052182	47053182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	2042.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	7.3406521476273	7.67715258755936	7.57337800391846	7.83570692309816	7.94763655489449	7.56136461808008	0.376844249168072	0.124803339330532	0.47258743328547
Merged-chr7-12949651-4	chr7	12949170	12950170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16168.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	5.96832960199737	6.11033208854043	5.91922853392033	6.19077304717229	6.25101470994552	6.22670052819931	0.367530826804629	0.196691384651846	0.584656761837274
Merged-chr3-41402029-4	chr3	41401532	41402532	+	912.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91167.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	4.316291417533	4.17096431278316	4.13892658179087	3.65894226647982	3.97386808544305	4.37826757302072	-0.516779814653903	0.340192145434952	0.729874121067258
Merged-chr10-98897724-4	chr10	98897216	98898216	+	975.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16926.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.03273578572671	8.23529750414646	7.75436489349618	7.87161889769367	8.13481259735464	7.86149974929553	-0.0889178986606662	0.716362068342747	0.926569584146506
Merged-chr7-30321057-4	chr7	30320498	30321498	+	649.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033140)	TTS (NM_001033140)	1377.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	4.5041866309277	4.62633104339115	4.20762386073355	3.85649903779631	3.7662440905672	4.27666171604796	-1.38152133706742	0.00760464008346748	0.0829749399508474
Merged-chr9-63092563-2	chr9	63092063	63093063	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54417.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	4.73661390317328	4.76489218989353	5.0044680044551	5.0670495432785	4.9785054446134	4.89072783952949	0.337948982791373	0.380574522226094	0.762624904906886
Merged-chr8-70760402-3	chr8	70759874	70760874	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183170, exon 2 of 5)	exon (NM_183170, exon 2 of 5)	547.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	6.23478938216465	6.26862337535428	6.16586195607825	6.32965058091225	6.17678779107054	5.75789440978574	-0.175009084512315	0.570814028384248	0.869266484779943
Merged-chr10-81291231-2	chr10	81290731	81291731	+	794.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013769)	promoter-TSS (NM_013769)	36.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	3.9487090513638	3.76635607940538	3.66818561674931	3.65990771793899	3.59514604330774	3.73895483535208	-0.479502371340089	0.377313735003189	0.759722232598799
Merged-chr3-142563684-3	chr3	142563184	142564184	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 3 of 11)	intron (NM_001355403, intron 3 of 11)	3328.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	3.58539962271164	3.52717470679289	3.75684914779906	3.9352269473907	4.03654780566726	3.82727461345515	1.05966065520025	0.0475063844948374	0.276115265630568
Merged-chr19-37689666-4	chr19	37689155	37690155	+	963.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3975.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	6.42247896066632	6.6627293151707	6.35802997786291	5.90756452247417	6.20884998519671	5.88280386153442	-0.786082230491778	0.00892829023197247	0.0930350400980476
Merged-chr5-31942817-3	chr5	31942286	31943286	+	806.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-193686.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.04752184799502	4.29057111624957	4.08158222126974	3.36929603220908	3.29468504397963	3.53142191086193	-2.74823469688648	5.61556307173992e-06	0.000244098749439198
Merged-chr13-41331815-4	chr13	41331331	41332331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	27170.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.7819990933159	3.87340158628971	3.73204392533654	3.4985285990789	3.36323209658733	3.80163956294555	-0.841028044593452	0.143224774737663	0.505212050378204
Merged-chr2-51147090-3	chr2	51146601	51147601	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 2 of 4)	intron (NM_028810, intron 2 of 4)	2010.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	4.15465420269815	3.89799110454736	4.13770992591906	4.14313862244987	3.69444204933813	4.2054210744297	-0.118730722770345	0.823112020824655	0.958214218900685
Merged-chr8-14887700-2	chr8	14887200	14888200	+	695.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012000)	promoter-TSS (NM_012000)	-836.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.40323053232935	5.44113517690308	5.26284573513074	5.38595671565051	5.27713890159441	5.42034028755075	-0.0410835205009869	0.903451735097265	0.977827650905621
Merged-chr6-56923920-4	chr6	56923444	56924444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026004)	promoter-TSS (NM_026004)	-12.0	NM_001360963	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	6.55987588843512	6.57678474512131	6.6632293647232	6.68108111502019	6.73073807957589	6.70604015974172	0.174107985587006	0.4900361579616	0.829980359087456
Merged-chr11-87987146-3	chr11	87986678	87987678	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	355.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	7.08515660651098	7.08908121216724	6.97617545596004	7.34003898987614	6.92877414768501	7.10090273797768	0.117541021971373	0.644612602297697	0.900287351502017
Merged-chr14-70859031-1	chr14	70858531	70859531	+	545.0	f0_balb.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	6098.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.30506576642032	3.31788828815973	3.61762813811965	2.91748270312216	3.09649572895138	3.03684000353574	-1.69800556113597	0.0134679624541548	0.1235003548474
Merged-chr1-184063182-4	chr1	184062692	184063692	+	716.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	28811.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.15133982631424	3.87294627409375	4.01814222872578	4.13138672426188	4.20585267981024	4.03821375610378	0.32582176499598	0.506831089043979	0.838597859957521
Merged-chr4-116627972-4	chr4	116627473	116628473	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016777)	promoter-TSS (NM_016777)	-22.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	5.70551081492243	5.51883523334388	5.89944656763039	5.7534082974565	6.03169528014631	5.68498844371718	0.248424826185539	0.451274492217702	0.808957790071745
Merged-chr6-136805085-4	chr6	136804594	136805594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-663.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	7.43841038843446	7.5119763922849	7.35052529477508	7.29475757234874	7.80619036943619	7.49304540684165	0.173140507217828	0.495086065915725	0.832258300794288
Merged-chr5-96917958-6	chr5	96917466	96918466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3306.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	7.43416386630362	7.33705579530922	7.36914428706116	7.57542474443209	7.89667296951695	7.60992733961832	0.478150652791785	0.0416527682562943	0.255197963409892
Merged-chr6-134527778-1	chr6	134527278	134528278	+	584.0	f0_balb.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	39135.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	3.8564620072982	3.84257370024984	3.71335846924148	3.53208708355359	3.58791846674054	3.7832700874876	-0.595935288421553	0.27356784073036	0.67090196856647
Merged-chr7-49001743-3	chr7	49001263	49002263	+	803.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	42690.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.68306475518544	4.83755760491488	4.44253289027843	4.84159194462256	4.64368175013991	4.76572868818049	0.170574962634442	0.68442867397658	0.915884502963143
Merged-chr19-42080163-4	chr19	42079680	42080680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198108, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	6190.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	4.22474765686802	4.06483745962901	3.85408348560415	3.85917861768342	3.64346550764373	3.81914117264121	-0.909066942548429	0.0848726853527555	0.385758802798497
Merged-chr18-34989486-4	chr18	34988974	34989974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35123.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	3.22717083756231	3.00117392405136	3.0087548450956	3.12222209563704	2.94392506421301	3.36545737254432	0.271388260113807	0.691199172860449	0.918256515929559
Merged-chr15-68066787-4	chr15	68066332	68067332	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192024.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.60836258055553	3.39640200649591	3.46610666471347	3.46822001265723	3.47788589144599	3.36668956758757	-0.19533081417113	0.738644745926067	0.93406400924634
Merged-chr8-70620927-2	chr8	70620427	70621427	+	863.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153074)	TTS (NM_153074)	4083.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	4.84144734434526	4.54249367476163	4.60714825581903	4.94090591231049	4.61886240558061	4.54536968785587	0.100088313736137	0.815270924474067	0.956370078970016
Merged-chr18-77705002-3	chr18	77704470	77705470	+	702.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	9040.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	5.4704688370814	5.86482692330532	6.08336415580227	5.36882644918443	5.4349276720373	5.55866008522483	-0.685623626940888	0.0512467572710872	0.288513129875908
Merged-chr5-113771707-6	chr5	113771258	113772258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151532, exon 1 of 17)	non-coding (NR_151532, exon 1 of 17)	642.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	7.8550673082236	8.21172268246109	7.78352067659461	8.15042223510524	8.2682322324057	7.70278017702744	0.143400354035237	0.587775325965944	0.876090509043824
Merged-chr17-86962557-4	chr17	86962056	86963056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145491)	promoter-TSS (NM_145491)	-555.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.65229490025671	7.76182979285248	7.22739867983017	7.31530884069982	7.30133678699477	7.10413802360669	-0.483139600658104	0.0627225772281248	0.325659566079983
Merged-chr16-30512589-1	chr16	30512089	30513089	+	564.0	f0_balb.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	37989.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	4.31877910906477	4.00670555323239	3.99523319437174	3.65868823899487	3.72241412605478	4.11094899672355	-0.857920701203487	0.111998131678763	0.447004055100082
Merged-chr10-126928772-3	chr10	126928371	126929371	+	903.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27500.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	3.98153682023687	4.5774244120621	4.49624631931118	3.5563073874835	3.44528148141132	3.80453644929143	-2.48768935137834	2.19117570218335e-05	0.00078893703084064
Merged-chr12-32379537-4	chr12	32379050	32380050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	761.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	7.56006265054762	7.6047909194784	7.55599176607579	7.60186937615402	7.60974738684784	7.68691759601916	0.0823192442911137	0.704490480370223	0.922442166763761
Merged-chr13-17696445-3	chr13	17695972	17696972	+	712.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025479, intron 1 of 1)	intron (NM_025479, intron 1 of 1)	1059.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	6.17693452168136	6.05724687075918	6.16418555646315	6.57576158573531	6.71855159293708	6.38838991637325	0.732294769961984	0.00839648468671171	0.0891027544716118
Merged-chr2-101678434-4	chr2	101677940	101678940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009424)	promoter-TSS (NM_009424)	20.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	7.16498276521859	7.22574567952642	7.04549945011794	7.10165411911541	7.04511861934626	6.76480549260887	-0.24942981441432	0.319876315449395	0.713764238560291
Merged-chr6-50038443-2	chr6	50037943	50038943	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71798.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.26555153113539	5.34888355424455	4.92756158868223	5.34948800695976	5.37515594642566	5.03377088233543	0.133432847939091	0.7241866404608	0.929235307407624
Merged-chr10-75872932-4	chr10	75872362	75873362	+	856.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12G|LTR|ERVK	-12612.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	3.65749711757458	3.29838722259264	3.62193731866273	3.66154364154315	3.29004355156633	3.64047834338832	0.0107449186901141	0.985989000176964	0.997012598759537
Merged-chr11-69124264-4	chr11	69123737	69124737	+	946.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033041)	TTS (NM_033041)	-2140.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	6.44592493316563	6.31192341252482	6.3768900538991	6.40434570635157	6.66815336356205	6.56264612300319	0.281977752188131	0.296374758060128	0.69310710704517
Merged-chr2-27681873-2	chr2	27681373	27682373	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	4672.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.49371800267765	5.93111981481306	6.35826452137337	5.75593481972507	5.6143014856987	5.93079208584746	-0.353311157360413	0.338581708797266	0.728543936569625
Merged-chr5-100425157-2	chr5	100424744	100425744	+	737.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_034038, intron 3 of 4)	MTA_Mm|LTR|ERVL-MaLR	4291.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	2.76586660442509	2.96866427335585	3.48314772375143	3.05935213454246	3.48034357812977	3.50309300103718	1.00932817318572	0.192882870132346	0.579924041841816
Merged-chr11-69245878-4	chr11	69245403	69246403	+	960.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8881.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	4.57178098782166	4.14093330226383	4.27207264826869	4.51256496680347	4.51415830716276	4.63911997913699	0.523922179045143	0.250418992478052	0.647791566440146
Merged-chr18-36679406-4	chr18	36678902	36679902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357512)	promoter-TSS (NM_001357512)	-36.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	8.48229452098536	8.55815538862379	8.15613676910009	8.04330320093821	8.53661703829239	7.95840262668348	-0.279210841991197	0.288298481916157	0.685706039426011
Merged-chr16-23311877-3	chr16	23311383	23312383	+	946.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	L2|LINE|L2	21413.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.90158736652034	4.54482908862124	4.88421757861947	4.52423850388216	4.56813763346269	5.14146810888937	-0.0441552372279951	0.92207398481421	0.982542868764899
Merged-chr2-153089065-1	chr2	153088565	153089565	+	734.0	f1_balb.idr	Intergenic	B3|SINE|B2	-19403.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	3.49799331042986	3.64018195457663	3.629591046538	3.44912875492654	3.48878347757761	3.938065322059	0.156267134954962	0.790233333284036	0.949368241827272
Merged-chr11-54954968-2	chr11	54954468	54955468	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	RLTR11C_MM|LTR|ERVK	7972.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	4.4927861543369	4.61499115401485	4.35672097506443	4.73973366077991	4.69008783440869	4.51684720021246	0.380439794628065	0.371873820389624	0.755841610252976
Merged-chr1-78489199-4	chr1	78488723	78489723	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-326.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	6.3609032318639	6.94786759516814	6.69366907127388	6.81942973205334	6.79180887408502	6.28861500529695	-0.0437569394926532	0.889533107784006	0.974240173857916
Merged-chr15-67479484-4	chr15	67478982	67479982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	252713.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.60492779458508	4.32188949646555	4.47893952616671	4.17965676133394	3.89456333871102	4.29058877888051	-0.956653456970312	0.0461953175054998	0.271897855202492
Merged-chr9-46106396-6	chr9	46105873	46106873	+	807.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	93553.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	4.16219428769141	4.25350166139635	3.91243432812412	4.58329113800947	4.37968444848124	4.55146739530681	0.993551273951919	0.0371048320284295	0.23769488516603
Merged-chr14-33195228-3	chr14	33194749	33195749	+	768.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-10183.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	4.41607588332907	4.43457777725458	4.40433150892007	4.25975203314915	4.2226509999073	4.47103469725288	-0.278012381115221	0.531411356581986	0.851584549697133
Merged-chr1-106020043-3	chr1	106019541	106020541	+	863.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 8 of 12)	intron (NM_001122675, intron 8 of 12)	29635.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	4.42557337698943	4.31812716202961	4.12180600501708	4.14455001339172	4.22861732963806	4.49809093727361	-0.0281181365475068	0.952511161307424	0.989124260059756
Merged-chr7-44004408-2	chr7	44003909	44004909	+	647.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8269.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	5.00755357000115	5.20375639015148	5.10874099336004	4.31671772898049	4.17743039071377	4.40997399362557	-1.97406743612929	2.98925973931893e-06	0.000141565352526608
Merged-chr5-33379618-2	chr5	33379118	33380118	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153108, intron 2 of 12)	intron (NR_153108, intron 2 of 12)	922.0	NM_001081101	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	5.52304427630968	5.68672396972822	5.73412662219236	5.2743604713305	5.50839815121986	5.69511305161832	-0.281624160643383	0.403556583847098	0.778882003719199
Merged-chr13-100859272-4	chr13	100858742	100859742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25815.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.41630756011584	4.38304644722771	4.27226333612321	4.38313980427437	4.5633709204579	4.19620367499559	0.100845718842077	0.824960923416785	0.95862923400744
Merged-chr8-120103624-3	chr8	120103136	120104136	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2164.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	7.97877384021899	7.94552825502718	7.97098476112929	7.88654025606071	8.29091859719247	7.82743730112727	0.0893270730387613	0.70797406918562	0.923606271223831
Merged-chr13-12415210-2	chr13	12414710	12415710	+	917.5166630000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 20 of 44)	B2_Mm1a|SINE|B2	19835.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	2.16430639021138	2.28251730642079	2.2678798779576	2.3416328290875	2.23983491411738	2.59492238594757	1.03219592461952	0.23397603683827	1
Merged-chr12-3431178-2	chr12	3430678	3431678	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	B3A|SINE|B2	4321.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	3.24581909844821	3.54731751245801	3.65760644593501	3.46850388578964	3.70867288554226	3.82420408457833	0.640659885710752	0.285423888007783	0.682929344184254
Merged-chr11-53776822-2	chr11	53776322	53777322	+	634.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159396, exon 10 of 10)	3' UTR (NM_001159396, exon 10 of 10)	6349.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.82510346985338	3.78921223400893	4.61756291498371	4.22776960847238	4.12001162438428	4.42416387581366	0.351770895969423	0.535015356410177	0.853375830335747
Merged-chr15-27672347-4	chr15	27671871	27672871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9171.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.42965070938343	6.52870630749257	6.53573733664814	6.30173428244873	6.4114241953805	6.29897415678872	-0.251771412494358	0.345070338017211	0.73360619039158
Merged-chr10-78573930-2	chr10	78573430	78574430	+	745.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173751)	promoter-TSS (NM_173751)	-570.0	NM_173751	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	4.08783469921219	4.15995861228588	4.32224072760803	4.04040488421844	4.23001880460145	4.25987043627988	-0.0197339539595276	0.966707258034129	0.992349609766636
Merged-chr8-70761075-4	chr8	70760588	70761588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183170)	promoter-TSS (NM_183170)	-167.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	6.8954475367377	6.89335707880104	6.66374406782176	6.79329380073566	6.99062744107445	6.42844825847647	-0.0855984181259292	0.762896726616601	0.941663714620562
Merged-chr13-52636360-4	chr13	52635867	52636867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	39485.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.49339821333123	6.55145914631597	6.24379290626529	6.48314724242137	6.48654800849672	6.32500992734797	-0.0114155233400734	0.966945322834608	0.992418870149749
Merged-chr6-82764320-4	chr6	82763810	82764810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	10144.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.26861810384776	6.37930528458007	6.34129711583018	6.64171494940676	6.67089182163067	6.51338970206871	0.461175608679621	0.0803078423343476	0.374965206495505
Merged-chr13-46726590-2	chr13	46726090	46727090	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	intron (NM_175749, intron 1 of 21)	1259.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	5.94859598701586	6.25442713351764	6.32467480708623	6.60814659243159	6.70665754601827	6.74085482566151	0.822837662450544	0.00325011568745649	0.0447666985800164
Merged-chr8-105260700-2	chr8	105260200	105261200	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	3894.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	3.24539723844593	3.19150660122267	3.21587868999043	3.33992800675011	3.24881132378889	3.50687855061054	0.585303728009609	0.342053271998692	0.731142095278512
Merged-chr4-142081214-5	chr4	142080732	142081732	+	838.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	-3066.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	6.91003754850801	6.90171138510704	6.94587992633612	7.44507358426092	7.16369677389454	6.88747601083654	0.415807188773978	0.1161825172381	0.455137876890266
Merged-chr7-43532492-4	chr7	43531901	43532901	+	815.614563	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 2 of 6)	intron (NM_001111058, intron 2 of 6)	770.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	6.76211480653743	7.25752316648298	6.94160598139768	6.87511016356392	7.06091017899122	6.83954148231344	-0.113270403098945	0.678491300282746	0.913498554171186
Merged-chr10-98894612-4	chr10	98894111	98895111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-20031.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.33057445892244	7.40820861701323	6.99311525950582	7.07854523182964	7.48825726557541	7.18419547146335	0.00749905994969384	0.977611587784062	0.994887548257726
Merged-chr2-60216585-3	chr2	60216059	60217059	+	760.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	B1_Mm|SINE|Alu	6623.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	4.49107980169974	4.34595690432723	4.33747827810313	4.40153962779214	4.32482148374439	4.49092999787815	0.0132876946739834	0.975862386831239	0.994568517612701
Merged-chr2-157367006-4	chr2	157366518	157367518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	-576.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	7.89779711765788	8.12505821049592	7.82157182236626	7.91633093385982	8.1423300734692	7.827074487435	0.0224027881553975	0.923380067517223	0.982699256056545
Merged-chr5-113402874-4	chr5	113402376	113403376	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45582.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	2.29974915757585	2.19689373197321	2.40482222254539	2.28614122185044	2.09701485602102	2.21953054631924	-0.694137866357891	0.428223592415916	1
Merged-chr2-22772787-2	chr2	22772287	22773287	+	820.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1540.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.4883956243282	3.51861056361055	3.54798375794913	3.19145275754762	3.51620964553107	3.34304663261489	-0.575623793708119	0.34486843822919	0.733373712840888
Merged-chr14-33193997-4	chr14	33193493	33194493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8927.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	7.85614208556065	8.01943204921607	7.49779877713275	7.41607976647797	7.83373646432773	7.74541909492064	-0.197370621938434	0.451491161878011	0.809090898196615
Merged-chr4-132922745-4	chr4	132922227	132923227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163792)	promoter-TSS (NM_001163792)	-176.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	6.96431511547013	6.84262284830288	6.61279524181785	6.97186812961908	6.88688265632446	6.63711682525317	0.0363844639022695	0.891922376490372	0.974942585822634
Merged-chr11-34776190-4	chr11	34775685	34776685	+	931.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	7720.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	4.6795618786328	4.63201936487555	4.32286344591289	4.60606658318687	4.27285076309623	5.07312251707067	0.294221844605597	0.547472917852001	0.859301049716661
Merged-chr18-64511112-4	chr18	64510634	64511634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 5 of 14)	intron (NM_001142950, intron 5 of 14)	5423.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	6.41164541750469	6.72655781872368	6.49109320221575	6.38157132889589	6.81450546338395	6.53264929781149	0.0698113551996177	0.808892938247128	0.954721853010197
Merged-chr4-123750362-4	chr4	123749869	123750869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-70.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	8.28488639512165	8.35068671707621	8.29846408546558	8.30775110430474	8.39633481599648	8.28003952300238	0.0268344799910129	0.89406760793997	0.975337673545585
Merged-chr8-95142610-4	chr8	95142072	95143072	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145831)	promoter-TSS (NM_001145831)	-32.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	5.35140110667307	5.63961764959712	5.45128941763726	5.44534381848245	5.43354267146081	5.59882062126965	-0.00282541481430458	0.993286757329965	0.998651348330892
Merged-chr19-7569866-2	chr19	7569366	7570366	+	895.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	intron (NM_001362425, intron 2 of 4)	12381.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	3.39022481502479	3.27577616791325	3.44898083129025	3.36052860714256	3.18289137636195	3.57078262079786	0.00671177697292864	0.991307232645816	0.998222399926149
Merged-chr1-74304609-4	chr1	74304109	74305109	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027154)	promoter-TSS (NM_027154)	-273.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	7.3489312482287	7.52695416190796	7.04088739197507	7.36019523210208	7.25106199446371	7.05752138267815	-0.144230989943237	0.580308189607204	0.872790901612974
Merged-chr1-155076129-4	chr1	155075625	155076625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	7139.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.43062205748958	6.1722343116128	5.89947534455938	5.91952424247773	5.78743225180589	5.57001114488595	-0.732181322176053	0.024874765419773	0.186483420222405
Merged-chr4-10965133-6	chr4	10964595	10965595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42524.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.83071307538744	5.87525267171769	6.06246637688453	6.27044215016769	6.28574461236614	6.07886581407239	0.520800802377067	0.0740372352955709	0.357899300529169
Merged-chr8-53639026-4	chr8	53638522	53639522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146208)	promoter-TSS (NM_146208)	43.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	3.00302123980428	2.86352531339337	2.98655898416338	2.9984753534079	3.01821066530711	3.17391401308627	0.513564977682936	0.444456486530684	0.804208570679014
Merged-chr4-132570883-2	chr4	132570383	132571383	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	B2_Mm2|SINE|B2	6816.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	4.25624710180393	4.27165897655491	4.57397891037006	4.19972384713388	4.31441042900796	4.02209025596041	-0.46391183767832	0.332735116963519	0.723822839537267
Merged-chr6-146640795-4	chr6	146640314	146641314	+	842.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1765.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	3.71190421515166	3.5904376356643	4.22150081969534	3.58183751081228	3.65695637335831	4.03915201834219	-0.296086387327278	0.618761738729492	0.889515655407396
Merged-chr3-135681499-3	chr3	135680993	135681993	+	742.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	10054.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.41326201980709	3.45170001659117	3.47334139871051	3.49837385638965	3.20863608288668	3.37827345427761	-0.316012742861537	0.598559388985689	0.880808927175713
Merged-chr19-45058466-4	chr19	45057954	45058954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10878.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	7.97562671607884	7.99269260604084	7.85044654162268	7.79903864469899	8.08557026925075	7.64961685461181	-0.109398112288186	0.642598387825437	0.899439807829718
Merged-chr6-124965404-6	chr6	124964859	124965859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355541, exon 1 of 8)	5' UTR (NM_001355541, exon 1 of 8)	179.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	8.43716271620492	8.47309534406025	8.04167358870154	8.44751360932024	8.35911914851832	7.93981762041541	-0.0895690642034757	0.724418032542368	0.92936515763351
Merged-chr5-32976694-1	chr5	32976194	32977194	+	589.0	f0_balb.idr	intron (NM_001025426, intron 39 of 42)	intron (NM_001025426, intron 39 of 42)	-42122.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	2.73238543526969	2.49823126108644	2.75156001832692	2.4109267044796	2.39193851019653	2.70514229400243	-0.927742127490024	0.256776013210304	1
Merged-chr4-135230064-2	chr4	135229564	135230564	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	42696.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	3.98505211570235	4.23945923215868	4.25702734277341	3.52295271427412	3.63590270189702	3.81651533092062	-1.61114146169592	0.00292618762871825	0.0413600591556406
Merged-chr6-83475690-4	chr6	83475181	83476181	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19289.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	4.30200173360423	4.09590449582499	4.18879351032595	4.20292983275557	3.93894227959129	4.34415767135591	-0.102293154490407	0.833721451627841	0.961104751385188
Merged-chr12-82225135-2	chr12	82224635	82225635	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55119.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.71459322116196	5.74963173065889	5.53137309687215	5.71762897930714	5.89119841784729	5.95783481052965	0.32548055811098	0.299586330494911	0.696314831841331
Merged-chr3-116162331-4	chr3	116161842	116162842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32654.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.06237436185651	6.51822364397197	6.22394569593281	6.25033208600468	6.22315644317574	5.89365576472216	-0.247296458433793	0.428978480045914	0.795570481157701
Merged-chr3-104968153-4	chr3	104967669	104968669	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6460.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	2.84260900577938	2.57841619248645	2.89986192189569	2.71316191603285	2.87537760325719	2.66396646033908	-0.101869014766358	0.893598987802209	0.975265071347118
Merged-chr13-45395604-4	chr13	45394999	45395999	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	5757.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	4.42478657893657	3.95086845706187	4.29650121869794	4.04499346064368	3.96219328988136	3.83116949484226	-0.820684285590017	0.111804787315469	0.446553676520209
Merged-chr5-64224917-3	chr5	64224412	64225412	+	771.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-5445.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.60004462320118	2.52561363150929	2.84016714439585	2.49255074854906	2.44937796054534	2.79718523009952	-0.41487796608185	0.603955412939779	0.882883084260734
Merged-chr7-34167952-4	chr7	34167441	34168441	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016682, intron 1 of 16)	MIR|SINE|MIR	588.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	6.32256757855494	6.80568337605679	6.48346669415505	6.61330010033025	6.29060874698138	6.47047456364765	-0.15643036064687	0.59823586163346	0.880699378545974
Merged-chr9-59551230-4	chr9	59550712	59551712	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	11672.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	5.87020331609689	5.91518150754228	6.14877352228527	6.00593856211275	6.06781391660942	6.14712405917673	0.169774448906799	0.564837777562244	0.866552670637515
Merged-chr7-97371652-4	chr7	97371191	97372191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199035)	promoter-TSS (NM_199035)	74.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	7.03064057071482	6.87717004126394	6.62335829256155	6.76118397431653	7.03567788657568	6.74958181416662	0.0006001314282125	0.998235813525845	0.999590080903912
Merged-chr10-80156188-4	chr10	80155687	80156687	+	818.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 7 of 7)	intron (NM_001347117, intron 7 of 7)	6505.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	3.49643467210532	3.62473779984924	4.26403184808575	3.96102898885577	3.66853203899749	4.12573940995079	0.28578564756247	0.63959744198969	0.898199312621371
Merged-chr8-83131446-1	chr8	83130946	83131946	+	676.0	f0_balb.idr	Intergenic	Intergenic	-33906.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.42650252711599	5.47720862513259	5.59465188814951	5.40445656435822	5.07271362557193	5.68183082320157	-0.198287515215371	0.58740111801757	0.875891047417763
Merged-chr1-131867252-4	chr1	131866741	131867741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-36.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	7.91253650310099	7.9846121685212	7.15317704605	7.61807622730775	7.84181893367386	7.42164778816877	-0.145579227454617	0.629136397630491	0.894093618685532
Merged-chr17-28313461-4	chr17	28312989	28313989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163820)	promoter-TSS (NM_001163820)	-41.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	5.94707096449565	5.73691398271851	5.63244098885536	5.78581169480513	5.55823733461542	5.72223316298129	-0.180344554497156	0.574030974158674	0.870509200054583
Merged-chr16-57339643-4	chr16	57339158	57340158	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-13619.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.59494259321176	3.47848469046103	3.32014878047058	3.55616716102923	3.64032022598718	3.91935212930041	0.81469271018358	0.167852096665976	0.544041650801752
Merged-chr3-65380736-4	chr3	65380232	65381232	+	894.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026155, exon 5 of 5)	3' UTR (NM_026155, exon 5 of 5)	11821.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	5.45834128106848	5.1526150105529	5.35787951971437	5.46307443631819	5.74390344832006	5.72750441267313	0.619740198932529	0.0706466108540419	0.348409388095254
Merged-chr19-37554168-4	chr19	37553720	37554720	+	911.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	3802.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.8720607491403	7.06095913401638	6.85472643418343	7.08884594178567	7.39588331071564	7.3969569864642	0.55012743059512	0.0291051966518143	0.20485410277484
Merged-chr2-11516287-7	chr2	11515799	11516799	+	908.301575	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	-14209.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.75465189463466	7.17327537781779	6.76326728547535	7.0486178423815	7.38393831334405	6.83802157070329	0.30616111308984	0.292474395987151	0.6896822727195
Merged-chr15-50779201-3	chr15	50778731	50779731	+	851.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109818.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.46462610951137	4.41269350759077	4.41593255417771	4.64544338908721	4.37039973530458	4.39495327135086	0.111243902139932	0.798890376399542	0.952091414077158
Merged-chr6-49264039-4	chr6	49263546	49264546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347209)	promoter-TSS (NM_001347209)	6.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	8.74901503337842	9.18523014205322	8.61345234962731	8.65511646288475	8.94650661669267	8.62223325782736	-0.171922749464323	0.489583347870552	0.829763748031631
Merged-chr19-9956809-2	chr19	9956309	9957309	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23791.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	2.75653931545591	2.73692309899598	2.84225990708212	2.49890933396226	2.44281806937338	2.85639085120938	-0.956530282844753	0.23155946674828	0.627507317118448
Merged-chr9-57557462-4	chr9	57556961	57557961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3483.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	6.49298053864437	6.52074216708916	6.58936577452744	6.87799212975653	6.84514972071905	6.71414483120075	0.454292790949601	0.0729089691750238	0.354772485796221
Merged-chr8-14815843-3	chr8	14815332	14816332	+	941.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-72704.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.44674555947521	5.52296978700724	5.3255662191502	5.84900622249846	5.6706107166621	5.45428552601671	0.439295471888809	0.190763533033416	0.577285852673513
Merged-chr12-31949502-4	chr12	31949002	31950002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	CpG	743.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	8.70317552048786	8.63879685729235	8.39367660377933	8.6139824239774	8.41060064733883	8.48298172349116	-0.118292468685316	0.581461345804712	0.873298754324848
Merged-chr5-3787712-3	chr5	3787220	3788220	+	937.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003909, intron 1 of 19)	MER68-int|LTR|ERVL	-14933.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	3.25048958044231	2.94942399413317	3.04327449140835	2.85586212498641	2.74721227495547	3.17266557901198	-0.731446834530528	0.31245151155482	0.707170399766948
Merged-chr19-5693998-2	chr19	5693500	5694500	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	L2c|LINE|L2	4869.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	3.346928674998	3.29138756329431	3.54902795621461	3.4457991732478	3.34797897828049	3.61847889074579	0.283862173659659	0.634598070393661	0.896354115104213
Merged-chr19-6921330-4	chr19	6920822	6921822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	486.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	7.2013651475927	6.73716976760996	6.85727516542995	7.37198518432568	6.99437361058758	6.82368666367372	0.209269547477756	0.472216430100903	0.8205191831757
Merged-chr17-45586123-2	chr17	45585623	45586623	+	618.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199116, exon 12 of 13)	exon (NM_001199116, exon 12 of 13)	6270.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.66442346545781	5.59425103743749	6.24509143517077	5.79574959468105	5.90470446096685	6.19206014215685	0.199791602708464	0.571716047955403	0.869597823202143
Merged-chr10-81406836-6	chr10	81406264	81407264	+	801.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 6 of 8)	intron (NM_026756, intron 6 of 8)	-2811.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	4.77477228594674	4.65966294906192	4.32302242364294	4.60257997491462	4.49593610503045	4.69647241574487	-0.0393353573059144	0.928312039657493	0.983802612059568
Merged-chr1-95604037-4	chr1	95603558	95604558	+	847.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	L1_Mus2|LINE|L1	63536.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.58857827850545	3.69439763159608	3.86007207360377	3.44097128116425	3.60764864769308	3.73528838135039	-0.400288383339126	0.476859977353244	0.822967706384219
Merged-chr13-113607594-3	chr13	113607089	113608089	+	675.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	10975.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.98940950636603	3.81952567003243	4.08316853562212	4.07216027752043	4.0006093908863	4.19580733228214	0.366681771623599	0.458963627046722	0.813268143432506
Merged-chr13-65113011-4	chr13	65112554	65113554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133680)	promoter-TSS (NM_133680)	-72.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	7.48268202607569	7.77178392055137	7.87250525885529	7.81061451640735	7.72744152348324	7.92123892654448	0.148649241975784	0.527687403153125	0.850108008834301
Merged-chr2-174075434-2	chr2	174074934	174075934	+	861.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	5.25015272905963	5.2189100491452	5.6151320967584	4.87700417277939	5.01912853078678	5.47102186665188	-0.462614418844973	0.242937252309274	0.640179974985752
Merged-chr5-121399735-2	chr5	121399228	121400228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	B1F2|SINE|Alu	1746.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	6.14007772219212	5.68932090278085	6.17652332402865	6.66454427730509	6.89168685945815	6.39927543964656	1.08935137323319	0.000539300392397583	0.0111377778730747
Merged-chr8-46741181-4	chr8	46740648	46741648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	CpG	1403.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	8.06843926895012	7.9728219560731	8.07695993195857	8.14021878640823	8.03055773517909	8.28777390468846	0.160664564205584	0.452819819810437	0.809457484278845
Merged-chr3-51789623-4	chr3	51789140	51790140	+	885.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	128461.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.83640537399901	4.97037093287661	5.0832857249011	4.49787921072135	4.78842190355848	4.76098171640886	-0.611479895115087	0.130365781477613	0.482560431744706
Merged-chr2-153167931-2	chr2	153167431	153168431	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	6630.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.18208257560918	6.12848499160612	6.24380204554408	6.4519399819052	6.37385513056559	6.06438176344184	0.224636863072635	0.434702249013145	0.798628466396473
Merged-chr5-142441483-3	chr5	142440935	142441935	+	918.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-22496.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	5.09683841428932	5.42736981031618	5.79261726792825	4.81606800253396	5.15191094398432	5.15603017158042	-0.82246547469235	0.0419058627101568	0.256136186991603
Merged-chr1-54904305-2	chr1	54903805	54904805	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	Lx5c|LINE|L1	22082.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.79670007380013	3.00918978035555	3.13344548763913	2.66001035931609	2.80233742305255	3.40966813460103	0.0576423808047571	0.942379640762996	0.987202156853573
Merged-chr10-45859297-3	chr10	45858703	45859703	+	564.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51499.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	2.54024286809522	2.73516471478664	2.80890581586299	2.51957426965142	2.39850544964014	2.511830027201	-1.32692739119133	0.0991397100982707	1
Merged-chr15-80084072-3	chr15	80083615	80084615	+	775.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-709.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	6.56976607141969	6.84308007842209	6.55360492238412	6.99129025425334	7.24432648927881	6.90434077756588	0.608039347172206	0.0234027334941375	0.17920988851281
Merged-chr6-29214984-2	chr6	29214484	29215484	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1380.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	3.88087633700875	3.5766487538874	3.5256468103261	3.99089230820476	3.5684293614498	3.59899983662227	0.196887522605375	0.737607955257313	0.933814636237903
Merged-chr8-122914097-2	chr8	122913597	122914597	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65723.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.2293309462464	3.14679072903016	3.49307636003768	3.35099367080548	3.27140363436451	3.66157300167982	0.545560545984662	0.388383236155532	0.768253710068453
Merged-chr19-29465158-2	chr19	29464658	29465658	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER1A|Other|Other	54239.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	3.12094428561087	2.9486461217995	3.25243166749096	3.17224155575367	3.03119826025325	3.21266243514994	0.127766444074359	0.846114594328354	0.963961283421434
Merged-chr11-55148962-4	chr11	55148425	55149425	+	879.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	2781.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	5.01573076709504	4.76250916243796	5.28653675020628	5.25700765927758	5.12822188803522	4.98848513730645	0.223786161942148	0.567914145198358	0.868402679242594
Merged-chr17-34973195-2	chr17	34972695	34973695	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013558, intron 1 of 1)	intron (NM_013558, intron 1 of 1)	492.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	6.91339393205014	6.90266490982416	6.14614972758708	6.6902700784913	6.73022124559802	6.36469446717363	-0.160879722785058	0.623694318131581	0.891552110895095
Merged-chr12-12222188-2	chr12	12221688	12222688	+	734.666687	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-39951.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.34273795314247	2.98873799708715	3.00103735060971	3.22365551363738	2.90318874096056	3.67141015313798	0.721344944440571	0.330260888574484	0.721789606895393
Merged-chr18-84085881-3	chr18	84085385	84086385	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081300, exon 1 of 2)	5' UTR (NM_001081300, exon 1 of 2)	677.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.78024778698927	4.89837438891993	4.99758697483928	5.02742686017056	5.02451813327748	4.99210622775797	0.277093337037944	0.459709399608108	0.813861696225351
Merged-chr6-35569000-4	chr6	35568519	35569519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29131.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.15650008263786	2.64051020105758	3.05081757733613	2.90786553775876	2.91972875868176	3.39279998025312	0.53299732068143	0.492697299525763	0.831198914822865
Merged-chr11-117307201-2	chr11	117306701	117307701	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24514.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.22304817452459	3.89415175581736	4.01250548905134	3.95016603345906	3.84736562672799	4.03328330051518	-0.336652858362483	0.50642349112752	0.83842879061576
Merged-chr13-55430771-4	chr13	55430282	55431282	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3978.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	5.23914779169644	5.03141157034952	5.37709983125408	5.82871794689478	6.05380493812776	5.98599469160613	1.40718537845045	2.17358602165049e-05	0.00078294262203244
Merged-chr7-118712503-4	chr7	118712014	118713014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360794)	promoter-TSS (NM_001360794)	-29.0	NM_001360794	101565.0	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110|cep110	centriolar coiled coil protein 110	protein-coding	3.96800268908336	4.02484201321161	3.88841033686056	4.07374502064007	4.26587968360453	3.95920294635482	0.437858427168609	0.379227946720871	0.761692242666705
Merged-chr16-13832528-2	chr16	13832028	13833028	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346110, intron 7 of 7)	intron (NM_001346110, intron 7 of 7)	13277.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	3.15395668007751	3.3666652497249	3.35022098586069	3.62182518009159	3.46414589009645	3.36492470960613	0.760906185562639	0.211545131605859	0.603945120913907
Merged-chr14-54426331-4	chr14	54425797	54426797	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-612.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	5.91392464212164	5.87343283510547	5.64875010176957	5.95685833041139	6.16463060266082	5.71199394691224	0.257239174052145	0.423511054579102	0.792050429285735
Merged-chr17-57335434-4	chr17	57334921	57335921	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-23265.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.3918550427762	6.36744671898526	6.33362208618623	6.85978028253613	7.06034232638094	6.5654035685564	0.778662642589779	0.00491745178866421	0.0605462161040502
Merged-chr6-124415506-1	chr6	124415006	124416006	+	622.0	f0_c57.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	349.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	6.83059034410984	7.0916810623344	6.72856175460674	7.14458376696878	7.18642177136567	6.94115430746463	0.304348524021855	0.241313575002443	0.638385260200477
Merged-chr6-97341736-2	chr6	97341234	97342234	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-88954.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.09731538666533	2.87068387939775	3.12863919900143	2.99977901882133	2.45791760237599	2.84481502619128	-1.20414772277949	0.156400996196406	0.526939065129794
Merged-chr19-9955057-4	chr19	9954562	9955562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25538.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.7229603758243	7.5790307233728	7.65194348802682	7.46849618720764	7.47553835254107	7.46706557986086	-0.265253381187738	0.22795038989403	0.622981752321771
Merged-chr17-56265119-6	chr17	56264549	56265549	+	962.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8256.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	6.14436093218279	5.99793227945101	5.74193154912934	6.01485599617524	6.10211862814367	6.07632831662511	0.141640504732608	0.639583310776147	0.898199312621371
Merged-chr7-97782019-4	chr7	97781504	97782504	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6537.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.76303205149202	5.52021817743768	5.36873681030863	5.61700340285038	5.89858021236225	5.99195044068274	0.496752330446208	0.141172059174161	0.501979601184758
Merged-chr7-125555212-2	chr7	125554699	125555699	+	987.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	MIRc|SINE|MIR	2917.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	7.36811478107008	7.30030695045842	7.14837609592401	7.54286575711311	7.5585434528472	7.36138491454541	0.31626260372895	0.175760173078806	0.555774586970482
Merged-chr4-138980996-1	chr4	138980496	138981496	+	646.0	f0_c57.idr	intron (NM_029857, intron 2 of 16)	ORR1F|LTR|ERVL-MaLR	8091.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	3.40623672563133	3.31709573421668	3.48716905276264	4.36393822190196	4.88857551316119	4.08867901737825	3.75054975029958	8.64932570159729e-09	7.9612067807357e-07
Merged-chr1-43811169-4	chr1	43810667	43811667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16541.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	5.99667074083602	6.26829268161443	6.4820015905628	6.13875341703	6.18450855874077	6.1868205476637	-0.141950786573348	0.633461447373769	0.896059441151508
Merged-chr5-139024067-4	chr5	139023580	139024580	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29127.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.80974982985973	6.67633401715265	6.79566273516097	6.97737371299371	7.0714497722153	6.67812042284745	0.263707562861824	0.313254423344324	0.707836272539716
Merged-chr17-34611748-2	chr17	34611297	34612297	+	987.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163379, exon 6 of 7)	exon (NM_001163379, exon 6 of 7)	2783.0	NM_018862	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	2.11856637373109	1.93837032740349	2.16382686620122	2.17434715849777	2.01656348481605	2.30390704673878	0.673302141704828	0.467329084502489	1
Merged-chr16-30587687-4	chr16	30587214	30588214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178069)	promoter-TSS (NM_178069)	-125.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	8.26757463727478	8.52038467393163	7.92831822794454	8.28895071853915	8.48788573487426	8.10714539320699	0.0561244810079439	0.825479522985876	0.958821343666982
Merged-chr19-40661282-4	chr19	40660783	40661783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1513.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.77125229450159	7.84114719071467	7.49765415506028	7.75227391864021	8.0677749621467	7.80845139194203	0.244005455623332	0.309230659987167	0.704827247429003
Merged-chr1-60916358-4	chr1	60915855	60916855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001281976)	TTS (NM_001281976)	7330.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.04649391083511	3.60430169713742	3.55592315323396	3.89397033706185	3.77098882757733	3.99680161784899	0.388531480013664	0.494449651213546	0.832036472279676
Merged-chr1-155055978-2	chr1	155055478	155056478	+	750.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	27286.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.63201763440423	3.48924794177636	3.5735675663777	3.98212593831196	3.9826879879665	3.4051981822745	0.861745140267052	0.149819193583986	0.516362231947168
Merged-chr1-36988615-3	chr1	36988109	36989109	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-49082.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	2.6978484731163	2.77623572601934	2.76446044571875	2.78522945283681	2.51846884550903	2.8974778396524	-0.0455406647763344	0.952097774167423	0.989065289931371
Merged-chr18-60736817-3	chr18	60736322	60737322	+	645.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-3681.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.1441445221193	4.08872282451305	4.61848598259451	4.44180698990139	3.97237824047958	4.41436058231118	-0.0226380743932686	0.964848412972236	0.991681785548977
Merged-chr7-45128943-4	chr7	45128468	45129468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009438)	promoter-TSS (NM_009438)	-223.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	7.17222920965332	6.98451468761066	7.16288192391223	7.10379113012918	7.21897053138059	7.01503968757752	0.0221739505927218	0.927107570239272	0.983578869536024
Merged-chr3-8789966-3	chr3	8789456	8790456	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	-122918.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.53286064150325	3.49013225197239	3.61922406740512	3.09817343112729	3.26481673491415	3.73655284270493	-0.585658834733436	0.368350006020195	0.753359239527292
Merged-chr16-65454029-4	chr16	65453532	65454532	+	880.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-66597.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	2.59773824873007	2.60290357771506	2.87583544257876	2.74271493847158	3.03367642074647	2.94840345671817	1.16144893351589	0.123782424432682	0.470898704816255
Merged-chr13-33085805-4	chr13	33085318	33086318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 2 of 6)	intron (NM_173052, intron 2 of 6)	1715.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	4.12762384086575	4.14129902433244	4.26765153884171	4.27683846590766	4.10234967482561	4.85706251682834	0.695823134947788	0.17148146261498	0.549560896986326
Merged-chr17-24735867-2	chr17	24735367	24736367	+	991.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-726.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	6.17961690799134	6.16887087083838	6.40306890290926	6.24384328179157	6.54131595827137	6.29136928771196	0.210413460180503	0.462531117585604	0.815273593730977
Merged-chr14-75846672-2	chr14	75846172	75847172	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009429, intron 3 of 5)	intron (NM_009429, intron 3 of 5)	-1251.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	4.09082837305375	4.44455624718213	4.3963006310772	4.37502422872228	4.28305427431623	4.54436671039998	0.207300630641594	0.654424933254024	0.903779343778232
Merged-chr2-129338440-4	chr2	129337939	129338939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28467.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.2611947012912	6.18203902044792	6.42788027869623	6.44612464068806	6.66430518318224	6.71836038635224	0.530832762011021	0.0531169997305284	0.295381489872188
Merged-chr3-153944649-4	chr3	153944175	153945175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007382)	promoter-TSS (NM_007382)	-32.0	NM_007382	11364.0	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	6.69322198590716	6.68157349910856	6.80945451002929	6.83911239009592	6.71773622660495	6.34616878414074	-0.101252125786942	0.713628275773084	0.92557476402444
Merged-chr19-4144091-4	chr19	4143585	4144585	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	4286.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	5.88353321917815	5.68917076337974	5.90824027726323	5.50172567300152	5.37075535542942	6.05476620443284	-0.300014786950909	0.40219247641235	0.77787096574423
Merged-chr19-5848846-2	chr19	5848346	5849346	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3366.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	7.71971762477765	7.84731855730252	7.8055930425997	7.85113055203909	7.79939207373161	7.78657668994376	0.0305760416310621	0.886000072040462	0.973663488368302
Merged-chr5-125402758-2	chr5	125402260	125403260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12743.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.1116203096376	3.03129365606909	3.31594347083652	3.42090463078204	3.35315864978916	3.8351463324761	1.56382842991114	0.0165478973745939	0.142317048552476
Merged-chr11-117115910-2	chr11	117115410	117116410	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	CpG	738.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	7.52419305412208	7.79296345657089	7.17600622888257	7.82939898637718	8.11019694828174	7.65753677986363	0.509051676055502	0.0634780933583615	0.328250897530455
Merged-chr7-80711615-4	chr7	80711097	80712097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016721)	TTS (NM_016721)	-22720.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	5.75348350569075	5.61066240621883	5.80808135568006	5.79038129663912	5.40112318172933	5.6656545720401	-0.185093761330035	0.574972779011318	0.87094931637326
Merged-chr5-99415226-4	chr5	99414740	99415740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-162313.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.23056349071308	7.1546144137318	7.12407954060507	6.97878801087832	7.21318810530354	6.91005689016506	-0.184177004267489	0.454925030331433	0.810663309750856
Merged-chr1-131083294-2	chr1	131082794	131083794	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14549.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.35119759021556	6.32097879304679	6.27441602125661	6.33361899351549	6.3150045217002	6.27383039354415	-0.0148712463934254	0.955940318239734	0.989794703965702
Merged-chr17-34121918-3	chr17	34121416	34122416	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	-169.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	9.28100982405859	9.29009121088099	8.80894583242693	9.07214466854475	9.32053797335401	8.97235469087956	-0.0232377251146423	0.92204208947688	0.982542868764899
Merged-chr11-121057006-4	chr11	121056447	121057447	+	887.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026907, intron 2 of 4)	MT2A|LTR|ERVL	6622.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	3.17774723073189	3.22999095176735	3.25688520974254	3.22954902260092	3.20451054074413	3.09352306221776	-0.169242598878341	0.788066687549525	0.948849302309726
Merged-chr14-50932345-2	chr14	50931845	50932845	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-1496.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	4.18355916517895	4.40062488107926	4.29813730509891	4.3354413251082	4.45463831209674	4.36597628275457	0.239417896024534	0.593066242053222	0.878398361724896
Merged-chr5-115327109-4	chr5	115326620	115327620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-57.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	7.03495435228247	6.6679155420723	7.07289702591274	6.71512695468493	6.55517479228809	6.9241745863037	-0.313239097158663	0.259869527225957	0.657466424965747
Merged-chr9-104270158-1	chr9	104269658	104270658	+	547.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7228.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.18138952753006	5.3615144366533	5.2221620907667	5.55625763946853	5.47663540232284	5.69195988753198	0.601631424694109	0.0757305769460504	0.362336257059799
Merged-chr15-74921475-3	chr15	74921001	74922001	+	810.444458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33550.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.90399186710487	6.24579109896631	6.19550440411491	7.60731674418669	7.77460537919584	7.21549798373117	2.23041627580541	6.93070586126535e-15	1.89700714902687e-12
Merged-chr7-110627444-4	chr7	110626915	110627915	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009627)	promoter-TSS (NM_009627)	-242.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	4.81546100340667	5.21979987043899	5.10491881859241	4.98576853324104	5.27366127491435	5.44212795264662	0.380963618515325	0.328380851263583	0.720562985671201
Merged-chr11-34833675-4	chr11	34833182	34834182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027411)	promoter-TSS (NM_027411)	-41.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	6.22992778623671	6.38755723019954	6.21775939548788	6.35393294977398	6.19594637979193	6.25739260484163	-0.0271169577144103	0.922096407381858	0.982542868764899
Merged-chr4-3629714-2	chr4	3629213	3630213	+	635.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-26793.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.08692532833539	3.6833078490198	3.96727401870399	4.16345541445134	4.20835227499917	4.31211665085045	0.881509116321377	0.0821420590641064	0.379123019025808
Merged-chr8-79160070-4	chr8	79159570	79160570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	RCHARR1|DNA|hAT-Charlie	88513.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	5.00087562082599	4.81334557416954	4.33031558450687	4.85478287053189	4.56262594131879	4.07354682589097	-0.487768055251887	0.357213813586488	0.743838609597449
Merged-chr7-16255601-4	chr7	16255110	16256110	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B3A|SINE|B2	3728.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	6.72541582469386	6.89075082385389	6.85843026576303	6.49472936295714	6.75144205363744	6.47719787511491	-0.369675434584872	0.16271647396417	0.536188662408322
Merged-chr4-40287622-4	chr4	40287123	40288123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8202.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	3.81176587111988	3.71620071272826	4.06632086993253	4.15097457145433	3.75820331840765	4.50009047616054	0.865464537346837	0.121430674111051	0.466173646273416
Merged-chr11-107510520-4	chr11	107510015	107511015	+	879.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30987.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	4.20847364926115	4.02925904804479	3.848827527725	4.00462002717965	4.00281638426138	3.75424613253953	-0.331730134715287	0.524790456612879	0.848833934932934
Merged-chr14-55593242-2	chr14	55592742	55593742	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 5 of 20)	B2_Mm2|SINE|B2	1500.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	2.76744784875955	2.93256474937347	3.11443952353837	3.1711014444933	3.00393617721234	3.12934347833808	0.742741480983076	0.282369009562714	0.680334748738797
Merged-chr7-45459875-4	chr7	45459371	45460371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010240)	promoter-TSS (NM_010240)	15.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	8.17336189831849	8.03293324592298	7.58899637383498	7.91748892561578	8.05178717562062	7.52042103281288	-0.15016703332197	0.583492919941755	0.874062789752135
Merged-chr5-93269944-2	chr5	93269444	93270444	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 3 of 7)	intron (NM_007635, intron 3 of 7)	2371.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	2.52845896517197	2.61187014873077	2.73656581229416	2.5550863295494	2.55792907772287	2.42921654964284	-0.617436999714235	0.434516557831457	1
Merged-chr7-19460807-2	chr7	19460307	19461307	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-2313.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.44856785208988	2.19507862167565	2.43571306761908	2.53091442937718	2.33253859681088	2.63565324541751	0.858063948369702	0.314484096193382	1
Merged-chr8-120575892-6	chr8	120575313	120576313	+	860.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 13 of 15)	intron (NM_001145896, intron 13 of 15)	13262.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.75902704828067	3.56975328994815	3.80466906560005	3.38935540485498	3.71647932945497	3.61976987944144	-0.426566202663124	0.457296380276065	0.812201206649339
Merged-chr19-60799900-2	chr19	60799393	60800393	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9200.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	2.59834872713524	2.56267129863566	2.7342453580061	2.66485077526218	2.73930895769403	2.92469886527969	0.796624198915958	0.287325450245738	0.684644217183488
Merged-chr10-44071293-4	chr10	44070795	44071795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66449.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.81581868520038	6.20667097142442	6.23519125081413	6.06046087082544	6.23608748492192	5.97008043763571	0.0113265339955597	0.970918380253945	0.993599367110128
Merged-chr3-50439023-4	chr3	50438511	50439511	+	808.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 1 of 11)	intron (NM_011990, intron 1 of 11)	4602.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	2.74159933156874	2.85200386404569	2.82482196779088	2.54397758227161	2.55958588904145	2.51831737025959	-1.52153461282455	0.0519200041668959	1
Merged-chr17-24529323-3	chr17	24528818	24529818	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045289)	TTS (NR_045289)	1067.0	NR_045289	75614.0	Mm.440235	NR_045289	ENSMUSG00000093565	Rab26os	2610019E17Rik	RAB26, member RAS oncogene family, opposite strand	ncRNA	3.77346878738576	3.32013476828837	3.69720093374236	3.88003273361627	3.69644554744943	3.81851262320381	0.628045290241288	0.27838330747066	0.675623815920472
Merged-chr7-92873524-2	chr7	92873024	92874024	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355126, intron 1 of 5)	intron (NM_001355126, intron 1 of 5)	723.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	3.11356738569664	2.88340443685694	3.12644093621844	3.1437574113272	2.86098591247111	3.08280019768691	-0.0554844964212143	0.93560934340585	0.985869643214979
Merged-chr16-10475587-2	chr16	10475087	10476087	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4485.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	6.33209127773376	6.38764909591194	6.63081632497609	6.6509008307335	6.50467884435852	6.92096711742899	0.392732651894846	0.164595932040788	0.539208350811795
Merged-chr2-164414809-4	chr2	164414305	164415305	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009036, exon 12 of 12)	3' UTR (NM_009036, exon 12 of 12)	-9645.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	3.33187409497773	3.1244124481589	3.1427367659202	3.03753416040479	2.93387379071141	2.77058908806887	-1.29996867328534	0.0691311572288796	0.343993860226086
Merged-chr4-114986746-4	chr4	114986239	114987239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	CpG	489.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	8.32815413660077	8.5856239406841	8.44598264465488	8.35502674592975	8.47161952052851	8.19703098316433	-0.149868129898693	0.489796335141859	0.829921873754939
Merged-chr3-88553011-4	chr3	88552508	88553508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-57.0	NR_155541	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	7.29632494860808	7.45314727449732	7.31106917715381	7.12460899003158	7.34522954483495	7.48394640666637	-0.0513654557089481	0.831896103585276	0.960527454202785
Merged-chr1-181852631-4	chr1	181852116	181853116	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10215.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	5.55693808671738	5.73485012557106	5.4596807551095	5.65201773833961	5.74859000986999	5.55278974239177	0.118153819919065	0.716287520256081	0.926569584146506
Merged-chr4-119966394-3	chr4	119965899	119966899	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	151721.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	8.31477352174022	8.27653955341938	8.0153650161166	7.62934757309222	7.74937534152016	7.52150206630572	-0.814050099268776	0.000342986561851211	0.00777369544969559
Merged-chr1-174222347-2	chr1	174221884	174222884	+	863.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_011465, intron 36 of 51)	MTD|LTR|ERVL-MaLR	28592.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	3.37206052900683	3.06008993574907	3.28942109169115	3.59185502064893	3.23962998490125	3.30381038146629	0.572003520364883	0.375527503848939	0.758788065572183
Merged-chr7-66118652-2	chr7	66118152	66119152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9137.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.16612521287559	4.21561077676692	3.98538755763071	4.14688613478504	4.04237824533184	4.00454439356622	-0.189043701640194	0.695963719681287	0.919291538728398
Merged-chr11-106410876-3	chr11	106410374	106411374	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 12 of 21)	intron (NM_023913, intron 12 of 21)	-28093.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	4.07467400820901	3.64369926516953	3.65804321687677	3.65032279261199	3.70866649257211	3.56043346867724	-0.557081177651768	0.329574903663525	0.721399184090983
Merged-chr2-133021328-6	chr2	133020861	133021861	+	814.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75325.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	3.80819421627097	3.71297626491014	3.68289286856225	3.85119514391823	3.53917588569846	3.90493197315258	0.0945350043302065	0.863457507450609	0.968254670575276
Merged-chr17-87305220-2	chr17	87304720	87305720	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	22334.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.15516231534235	6.54616136902284	6.10568918091137	5.70505458566226	5.79111459527383	5.54097263851857	-1.04173088917593	0.00118913771842219	0.0206247765677487
Merged-chr1-55576188-3	chr1	55575667	55576667	+	740.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	170221.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.12327876707796	3.28180395128436	3.13694953099531	2.84505624392587	2.87278866358772	3.03303746904423	-1.26988270159532	0.064078625259308	0.329859827429875
Merged-chr4-115837936-2	chr4	115837436	115838436	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1262.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	6.33042229914247	6.53812172536583	6.29601917076757	6.21403166355163	6.37984123110609	6.4136275522484	-0.0999152426591537	0.719001186020137	0.927633547003347
Merged-chr6-83137729-4	chr6	83137219	83138219	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133641, exon 1 of 12)	5' UTR (NM_133641, exon 1 of 12)	635.0	NM_133641	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	4.08101352579861	4.38600855582101	4.07995341548011	3.65048682206374	3.69196131457549	3.85160830000577	-1.44996531928887	0.00577129498543017	0.0677890899417947
Merged-chr12-79983472-4	chr12	79982986	79983986	+	849.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47222.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	2.42833967336453	2.38854600657773	2.54156976988099	2.36790509383642	2.14944772529017	2.5538219291475	-0.567065905699196	0.513897707403951	1
Merged-chr10-30661147-2	chr10	30660647	30661647	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-5280.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.70718868075911	4.06315217492988	4.03971619195837	3.99864653780581	3.82828442738473	4.15275830993757	0.142242529312547	0.786436095810673	0.948503833695066
Merged-chr1-191275819-4	chr1	191275304	191276304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	42314.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	5.44748928264458	4.85000423922306	4.48940664833303	4.62970578441268	4.04736554270587	4.36732646783157	-1.47042547811432	0.00449386514097791	0.0568013145262019
Merged-chr11-116197696-3	chr11	116197162	116198162	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-1193.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	5.69936410358961	5.75918119424175	5.99649023513488	5.00877336270641	4.76948065292617	5.16955270138007	-1.66736886300225	3.70979427829299e-06	0.000170480690603603
Merged-chr17-26753708-4	chr17	26753233	26754233	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-27346.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	5.65624804553037	5.8602850395631	5.82795507837399	5.90553289786872	6.02614328076969	5.2923855331343	0.021998738813144	0.951225873774053	0.988715007619845
Merged-chr15-97360712-2	chr15	97360212	97361212	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113425.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	6.79965909189804	6.57510272373052	6.49195110367914	6.1672997614604	6.28079232456721	5.7868288889018	-0.854656215442847	0.0050644693445564	0.0617171009405169
Merged-chr10-59369626-3	chr10	59369130	59370130	+	886.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316371, exon 14 of 15)	exon (NM_001316371, exon 14 of 15)	-34055.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	3.06935243325108	3.04204012888555	3.3199497814529	2.95911364618034	2.75506407700454	2.94015512571578	-1.24011872606677	0.0782315688743936	0.369332901157478
Merged-chr4-108458312-4	chr4	108457806	108458806	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1120.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	6.43874296177859	6.41066333953901	6.20733266664854	6.50920634335458	6.6776039844132	6.40949763769205	0.29511909845661	0.284098049302331	0.681815652457338
Merged-chr18-79330281-4	chr18	79329786	79330786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220895.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.78638703717336	3.61814244200342	3.95147680102014	3.48417527449447	3.62750979207517	3.83270506049757	-0.452777176717399	0.419869282814263	0.789348043413415
Merged-chr10-118815003-4	chr10	118814493	118815493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	53910.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.81640839244915	5.68365667282623	6.0343953698737	5.93747474289757	6.15650737149026	6.4035432449818	0.572410818729037	0.0704699192966175	0.347888522387004
Merged-chr9-65581139-4	chr9	65580631	65581631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.25281376944566	6.95021437119089	7.02367969354415	7.53196380433584	7.53904492973548	6.98320041654154	0.454811671030921	0.0996762297475386	0.421072230534254
Merged-chr9-121846870-3	chr9	121846398	121847398	+	972.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-7437.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	3.28781261150262	3.20005077943616	3.65444165247535	3.1829217935063	2.95652148553227	3.57980008972998	-0.505931855459936	0.467236609306705	0.817875647788608
Merged-chr14-45664464-4	chr14	45663937	45664937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-6294.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.41165612021109	7.11668540956834	7.19315465271923	7.96865735635521	8.34505820845001	7.6932241514858	1.14392953693425	2.0720141936384e-05	0.0007522170899837
Merged-chr10-95361384-4	chr10	95360887	95361887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 2 of 2)	intron (NR_045337, intron 2 of 2)	25111.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	3.01847554950703	3.0748082673117	3.35461515920932	3.38525351241193	3.480204833269	3.19742463974809	0.886369686251093	0.172788935424137	0.551471816914255
Merged-chr8-86861749-4	chr8	86861236	86862236	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030563, exon 2 of 7)	exon (NM_030563, exon 2 of 7)	23522.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.02335909943647	5.9919512900921	5.66062765824136	5.91680648460288	5.87462067929012	6.27109836881441	0.19460265824408	0.546626724152321	0.858875010445646
Merged-chr2-160006776-2	chr2	160006276	160007276	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9877.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.52450783853728	3.46049716551526	3.93076770899103	3.49955880226681	3.19365429076631	3.77109033870999	-0.511782268206174	0.421955547182488	0.790865968752017
Merged-chr7-28584079-4	chr7	28583582	28584582	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027470, intron 1 of 9)	L2b|LINE|L2	14102.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	3.86207595264571	3.71640025524048	3.76673339974335	3.5700009662624	3.2995078630248	4.11040152870341	-0.267947232323174	0.668222198435684	0.909010294561388
Merged-chr7-102012016-2	chr7	102011516	102012516	+	547.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 20 of 25)	exon (NM_133947, exon 20 of 25)	6139.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.98534784427882	4.39540931423052	4.29708953830937	4.02230595213028	4.40244189502289	4.52832572672855	0.252142781675108	0.613973227091661	0.887338990172734
Merged-chr6-83031775-2	chr6	83031275	83032275	+	676.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291799, exon 5 of 5)	exon (NM_001291799, exon 5 of 5)	1696.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.53583715604843	3.663682364366	3.64272850264598	3.17993619869935	3.13894207599582	3.39522888875295	-1.51265243196101	0.0142066233639896	0.128072016995758
Merged-chr9-96720812-3	chr9	96720299	96721299	+	612.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359959)	promoter-TSS (NM_001359959)	-949.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	5.33690485656209	5.12332556965167	5.129375254002	5.18285162865287	4.95250219600707	5.01824730022743	-0.314993508512077	0.390650402777115	0.769828503085406
Merged-chr10-60284463-4	chr10	60283942	60284942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-19.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.46331524684286	7.75417680402621	7.72016684066561	7.80448549182396	8.16248793178124	7.55998282727398	0.323298739393704	0.217612501637257	0.611643731800868
Merged-chr7-113181607-2	chr7	113181107	113182107	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25858.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	3.50057883460484	3.84126839911226	3.88159734038534	3.81518575537533	3.58095454276094	3.85390880692484	0.0026053277646105	0.99629578799878	0.998961028701257
Merged-chr6-66944574-3	chr6	66944057	66945057	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	47666.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	2.86558762640751	2.91314792034046	2.88048607106176	2.95633631558124	2.97798126576448	3.12976308186596	0.630051047536483	0.354597066677116	0.7417627154336
Merged-chr10-81173953-2	chr10	81173453	81174453	+	883.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2678.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	5.35560238935135	5.21785040878444	4.99754794076125	5.03410459584142	5.2319254254858	4.98837469212482	-0.225413698827908	0.546552011779626	0.85884385473937
Merged-chr14-121423115-4	chr14	121422597	121423597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43867.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.81727963520466	6.65363806477827	6.79046455031248	6.93168699982084	7.02737218902607	6.70677816705856	0.23429895705105	0.363339428595361	0.748994025844601
Merged-chr12-4210172-5	chr12	4209672	4210672	+	822.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 17 of 21)	intron (NM_001159537, intron 17 of 21)	23793.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.12215076300144	4.98459828470608	5.07430407138481	4.48685701292159	4.22192946249976	4.30251003890149	-1.73142664663511	4.20972597764028e-05	0.00136845676359528
Merged-chr16-33895398-2	chr16	33894899	33895899	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	B1_Mus1|SINE|Alu	65734.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.44921064649692	5.32268976895481	5.5247215229605	5.54473518063968	5.59372479495294	5.34751034140787	0.152808651072368	0.648139777355393	0.901703040183932
Merged-chr12-70112989-4	chr12	70112489	70113489	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104397)	promoter-TSS (NR_104397)	-954.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	5.52301764392256	5.47937519249772	5.67317484595452	5.49856814698756	5.81514495076418	5.60067359081895	0.185243218429889	0.573617352467076	0.870251558775855
Merged-chr7-145284506-4	chr7	145284007	145285007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-496.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	8.29891377328782	7.9391317020733	7.91705234379848	8.33591132033632	7.800064611782	7.585771166113	-0.161035821964367	0.571324258088612	0.869428183241799
Merged-chr2-128698298-4	chr2	128697787	128698787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-628.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.73206844085516	5.53652258481849	5.60920381671431	5.66601873895936	5.75378263248536	5.15490100710056	-0.115095146412967	0.74789286354069	0.936842040609005
Merged-chr4-102272581-3	chr4	102272097	102273097	+	840.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	17658.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.92461482510941	3.13859177357201	3.05356157494913	2.81212071374919	2.73754618600379	3.00951088701186	-0.932896039822879	0.188709655915862	0.574222837446979
Merged-chr4-55741545-4	chr4	55741036	55742036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209061.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.09519079028884	4.18957946880122	4.00199982225197	3.91368618300018	3.74824375397397	4.33721667311746	-0.259489630028032	0.623579935711594	0.891465179209166
Merged-chr12-84417294-4	chr12	84416789	84417789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025525)	promoter-TSS (NM_025525)	89.0	NM_025525	66381.0	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	6.99219337767797	7.41147341508543	6.94059429165985	6.97371057603256	6.92347109663887	6.25855324430121	-0.562797897206131	0.0777677478333058	0.368103917271387
Merged-chr19-42001415-4	chr19	42000917	42001917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19654.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	7.231654111056	7.10016446797882	7.22792469606069	7.09820986499684	7.17404134887179	7.14110142428072	-0.0702289654161841	0.763718476167563	0.941793063578371
Merged-chr1-74370098-4	chr1	74369617	74370617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033345)	TTS (NM_001033345)	-5086.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	6.19642639612105	5.88173897042495	6.03588288209139	6.36314408625614	6.30624965858772	6.47455820821749	0.558912038476501	0.0528111938885132	0.29413077784976
Merged-chr14-54864175-4	chr14	54863660	54864660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177705)	promoter-TSS (NM_001177705)	-2.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	7.33263781015712	7.28972782644206	7.25667072392201	6.89109585367743	6.90079130769492	6.65658595982248	-0.705149228155275	0.00386309737074624	0.0506046294120046
Merged-chr11-118238173-3	chr11	118237721	118238721	+	686.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10371.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.39631609698914	6.60135800989383	6.81294006786623	6.71051637010815	6.58631590159301	6.81378573982791	0.150218032794359	0.583360072025966	0.874015969050121
Merged-chr7-104507895-4	chr7	104507360	104508360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167828)	promoter-TSS (NM_001167828)	-11.0	NM_001167828	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	5.97904040732863	6.29634920859712	6.02949698656239	6.30581059269933	6.67278885986047	6.53088542950086	0.660787353121445	0.0256800078881547	0.189953071060324
Merged-chr12-100199482-4	chr12	100198967	100199967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	32.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	8.27447300770621	8.29808025081389	8.12504261941661	8.14711253408003	8.4383952933412	8.10354355542761	0.00995266411812702	0.964430539842921	0.991478598183903
Merged-chr8-117519145-4	chr8	117518666	117519666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	20891.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	5.16056245530197	5.03818331646782	4.85317693398901	4.86180663253181	4.89464396348744	4.91918718065366	-0.306300763617765	0.420547126359714	0.789788738102311
Merged-chr4-15959272-3	chr4	15958846	15959846	+	771.299988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	intron (NM_013752, intron 1 of 15)	1379.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	4.76637867060656	4.41381476785627	4.43674171401935	4.49375533227592	4.64167807447395	4.54799653378218	0.0263144815556589	0.95185428480496	0.988976180066341
Merged-chr11-98952061-3	chr11	98951577	98952577	+	849.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	B2_Mm2|SINE|B2	-8394.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.87712393183582	4.67104057796534	5.05923341890166	5.05329046705616	5.15549505424341	5.18800245967612	0.571471508064805	0.13475540780147	0.490659614455871
Merged-chr7-127646488-2	chr7	127645988	127646988	+	887.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-31216.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	4.62639765353085	4.8786717314911	4.78492786631761	5.03971297359137	5.38001641314717	5.14166793898745	0.936801797736832	0.0159789399825377	0.138801725997729
Merged-chr18-23987086-4	chr18	23986568	23987568	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	3.66267983888614	3.54592036105032	3.78747739826308	3.83721715159977	3.56341663584714	3.70459660775372	0.135646325049499	0.806138534446991	0.954102910475772
Merged-chr13-46670294-3	chr13	46669814	46670814	+	740.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033192, intron 1 of 4)	intron (NM_001033192, intron 1 of 4)	792.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	4.66477752030578	3.97502650502355	4.43541466617331	4.6212006940594	4.06112802864172	3.97232727604436	-0.354962772136662	0.522423585258696	0.84761564078759
Merged-chr19-3674305-2	chr19	3673805	3674805	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	12259.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	3.0252883990278	3.00867872208412	3.36209421180511	2.9973531099209	2.97730231896068	3.38062770562498	-0.0469206847189298	0.945766703805656	0.98796006280508
Merged-chr10-62556657-4	chr10	62556157	62557157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	6.33704982685855	6.22845350027284	6.56914474764666	6.26065921718645	6.66563448470954	6.21772041277989	0.0535877904835926	0.859284047951547	0.967267211164924
Merged-chr17-79955042-4	chr17	79954531	79955531	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58908.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	3.28564712043496	3.47458583204053	3.4401899628644	3.73291240717277	3.67554382353442	3.87368067311439	1.27422204648453	0.0268383882717666	0.195063101842734
Merged-chr1-36554720-4	chr1	36554222	36555222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 2 of 14)	intron (NM_001304329, intron 2 of 14)	2835.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	5.16940980581058	5.01969578580507	5.01656307797014	5.15297198447958	5.10079133693936	5.18380308765879	0.145436197873734	0.686133711004567	0.916596830431285
Merged-chr11-115160706-2	chr11	115160200	115161200	+	742.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163753, exon 9 of 9)	exon (NM_001163753, exon 9 of 9)	-2641.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	3.68416769571947	3.34458179093644	3.49746701909596	3.4980686250969	3.54586683576705	3.45701079206862	-0.0522365255375823	0.929149832018355	0.983987942057929
Merged-chr2-173740493-2	chr2	173739993	173740993	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2922.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.21320920749148	5.0517143750147	4.56863296486008	5.0661165932843	4.72029088366216	4.81112033921761	-0.242281474533128	0.573751416186775	0.870292198441646
Merged-chr8-60963000-4	chr8	60962505	60963505	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-8206.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	3.42924263565588	3.67188743518588	3.61653763622002	3.73733643430431	3.56507690278266	3.52331871256121	0.128892322967501	0.82058322903836	0.957711579120597
Merged-chr2-120977565-4	chr2	120977116	120978116	+	859.089294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175285, intron 1 of 13)	CpG	554.0	NM_175285	96957.0	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	6.11288564502739	6.05471630655234	5.9147827145635	5.91991276295912	5.79349523707266	5.56914390761708	-0.454928372789772	0.141427546274269	0.502183459290427
Merged-chr5-62762191-2	chr5	62761691	62762691	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3986.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.45460849940638	6.19433818170442	6.09436518334936	6.2244040713962	6.56373993862913	6.19999334475503	0.144522459434573	0.631664582367976	0.89524721007624
Merged-chr11-4662471-2	chr11	4661971	4662971	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	24678.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	4.72452137891668	4.83564424753929	4.50115017701158	4.55326488833528	4.85316305551441	4.43185462605113	-0.148984298933902	0.734544271156653	0.932518454501854
Merged-chr4-132785679-2	chr4	132785179	132786179	+	584.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10685.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.70675797141073	4.82243223155833	4.91016318753032	4.98962837454268	5.07537939857842	5.04528780382881	0.502046047530039	0.183719765147326	0.567086627531948
Merged-chr4-149666087-3	chr4	149665585	149666585	+	968.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	ID_B1|SINE|B4	-2769.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.09799719135753	5.90182731043874	5.58055272779565	5.81661263611448	5.69566210693639	5.70125155664289	-0.270561175690047	0.40678385325456	0.781073132890231
Merged-chr3-104792169-4	chr3	104791642	104792642	+	739.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007484, intron 2 of 4)	intron (NM_007484, intron 2 of 4)	3108.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	4.01001584132156	3.90897059481856	4.04660835335235	3.57771916638265	3.67038107783353	3.87927056663705	-0.896103725329971	0.0907146361633511	0.400731760770871
Merged-chr6-108826237-1	chr6	108825737	108826737	+	856.0	f0_balb.idr	Intergenic	Intergenic	-2404.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.3241163338432	4.08415354214444	3.95544874133702	4.19796143626918	4.06139371223842	4.12616430938438	-0.0294465669495049	0.952000058604534	0.989013170479262
Merged-chr8-71370845-3	chr8	71370347	71371347	+	899.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029865)	promoter-TSS (NM_029865)	-451.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	5.81170133984458	5.78913637584788	5.82671057124523	6.15283874104921	6.57314495946521	6.3304417763089	0.961747159254304	0.00131794563719308	0.0223620759746251
Merged-chr14-105328511-3	chr14	105328005	105329005	+	877.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69832.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	3.61364414455026	3.41483095044996	3.76280975296105	3.74774483453078	3.73980070156751	3.62545855425339	0.381603238210364	0.496109403292076	0.832884389427821
Merged-chr15-99457220-4	chr15	99456698	99457698	+	850.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	CpG	550.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	5.7606862393167	5.76577883070104	6.17667596258305	5.62207943285513	5.67977612202694	6.21732122880449	-0.0878598676515898	0.803538112276092	0.95351077179348
Merged-chr2-57232559-4	chr2	57232050	57233050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5128.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	6.91717070100803	7.20363243059254	6.60152213290676	6.71187032147534	6.94609096846403	6.36981532863172	-0.356558425702098	0.249030015073532	0.645965755166734
Merged-chr1-135659693-4	chr1	135659195	135660195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60368.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	6.95640241131053	6.97678064050568	6.61870011362671	6.02728070830569	5.90836378816008	5.79659500384225	-1.55602677752869	6.12117508770561e-08	4.60100033150685e-06
Merged-chr5-24384688-4	chr5	24384177	24385177	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008713)	TTS (NM_008713)	7466.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	3.54656130283779	3.3077286721525	3.42446992611438	3.29665288025996	3.08205189998544	3.38593011893507	-0.70514530493767	0.260701485664805	0.658184635572459
Merged-chr19-7493474-1	chr19	7492974	7493974	+	553.0	f0_balb.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-566.0	NM_001163505	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	5.72456226716357	5.56124744276945	5.55474212192941	5.70809504105541	5.76966537146449	5.46847975536846	0.0865992515866703	0.790014081636451	0.949368241827272
Merged-chr14-45659763-4	chr14	45659270	45660270	+	831.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1627.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.40826398648262	5.72868608739005	5.69645428976333	5.63032835716027	5.62206187093555	5.78326361724262	0.108513351938487	0.739850170905938	0.93429228605942
Merged-chr8-120487986-5	chr8	120487537	120488537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-829.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	7.65090303831631	7.52358834193252	7.79895588731852	7.6427304021933	7.70760978294846	7.75601151534141	0.0642509128519578	0.774667957909025	0.944493464665915
Merged-chr5-105567805-2	chr5	105567305	105568305	+	729.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48334.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.289209845978	7.0303245677094	6.85709537669501	7.29234297758205	7.38324294120022	6.85323394792552	0.19298056821132	0.491448199589916	0.8305390728629
Merged-chr5-64299024-2	chr5	64298515	64299515	+	958.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68658.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.9744756240364	4.69156051377202	5.00315178694061	5.78760083515408	6.06967790457839	5.67281999780341	1.91955874328684	1.05464292621798e-07	7.49399902687835e-06
Merged-chr16-92791057-2	chr16	92790557	92791557	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	35017.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.61997777808008	2.65094577165438	2.82666757529197	2.58777397569475	2.56911479212948	3.17399209175436	0.521900331308765	0.514928201518638	0.843311862380436
Merged-chr2-68382596-4	chr2	68382114	68383114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	89367.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.9693202557759	4.97070987281218	5.08102842745548	4.8240783019624	4.93303953989742	5.11197020984402	-0.105584483584185	0.779278197572463	0.945710994231145
Merged-chr11-116012688-4	chr11	116012178	116013178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016905)	promoter-TSS (NM_016905)	41.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	5.49078897442115	5.5726644894106	5.21689334862268	5.3547076500385	5.34827411878569	5.06556896683125	-0.33946748182381	0.343749170482573	0.732572352000629
Merged-chr7-97333576-2	chr7	97333078	97334078	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039039, intron 1 of 1)	intron (NM_001039039, intron 1 of 1)	1255.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	4.04260511467653	4.20554303248782	3.92402924296168	3.62289739485722	3.25019433900883	3.37619116719337	-2.28425523532434	0.000176448373840092	0.00452349337026506
Merged-chr3-53462867-2	chr3	53462367	53463367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173382)	promoter-TSS (NM_173382)	391.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	8.34621438721346	8.72428058809288	8.39733202065172	8.50387171035512	8.67634396600774	8.32639150081818	0.0153412555335891	0.947523772320051	0.988008807662239
Merged-chr5-64312087-3	chr5	64311538	64312538	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	81681.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.50065194159725	3.41173807365733	3.81221950727259	3.51477192675364	3.34025686478529	3.58695485450462	-0.357515187214282	0.547641754239176	0.859389836719927
Merged-chr6-100287375-7	chr6	100286851	100287851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	7.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	7.16323960987359	6.95837443213901	6.50902201793683	7.13987540863136	6.51792763951066	6.43122110322734	-0.263521774582217	0.430946521217303	0.796614699034595
Merged-chr9-111289219-3	chr9	111288743	111289743	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17398.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	5.92809186548589	6.07683855865041	6.08704047846794	6.25307931003566	6.60178987516619	6.08007205701512	0.528804044551759	0.0841684422819598	0.383836881804084
Merged-chr5-142367590-6	chr5	142367109	142368109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33888.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	7.73588908814756	7.60554427739872	7.48531235340113	7.89657722661585	7.80000279512756	7.43470498446396	0.167236870810825	0.496487142931268	0.833052561713032
Merged-chr8-108748406-3	chr8	108747906	108748906	+	928.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	33762.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.35979648431529	5.60578565648781	5.5581388915095	5.4396566016451	5.18940134340155	5.69808733328511	-0.127371813130853	0.720535493306004	0.928214725379789
Merged-chr17-27857154-4	chr17	27856626	27857626	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	CpG	619.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	7.62252626403306	7.68178869078148	7.35871952585599	7.74712468202097	8.07292075803063	7.54613362276361	0.358788766195249	0.163826541509691	0.537798828885102
Merged-chr12-71040598-4	chr12	71040094	71041094	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 8 of 23)	PB1|SINE|Alu	24627.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	4.90898857427825	4.85428414096784	5.15630971090996	4.8038618905945	4.85254189658622	4.80623093502243	-0.325210559517671	0.402174494551677	0.77787096574423
Merged-chr4-155700639-3	chr4	155700153	155701153	+	729.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4162.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	3.13494582469258	3.19264051130659	3.18761406108047	3.2169872802694	3.10053020765299	3.25907431958862	0.0760217483404906	0.903958598069845	0.977931027227756
Merged-chr12-17794971-2	chr12	17794471	17795471	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	104162.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.85957556754823	2.93760878031859	3.05789467937321	3.03808805473589	2.67360298594663	3.12976795599846	0.0259504779422665	0.971594186856048	0.99377981119604
Merged-chr17-46639424-2	chr17	46638924	46639924	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029091, exon 7 of 17)	exon (NM_029091, exon 7 of 17)	6656.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	5.66914977492455	5.6883162855604	5.80202684326516	5.77579629034841	5.63175835203823	5.684183696297	-0.0356641486186291	0.908529950662965	0.979266532095756
Merged-chr16-4907289-2	chr16	4906789	4907789	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	21189.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	6.01145692522713	6.15275290647472	6.17370295497527	6.15696500537134	6.47581852980616	6.35319205824938	0.38182674945319	0.183406791645364	0.566519872270677
Merged-chr5-102498970-4	chr5	102498475	102499475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	17584.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	4.66330993366961	4.88527109227928	4.86170657217597	4.89859211056981	4.68846234748584	5.06404386358449	0.17072531513938	0.671798868175256	0.910674794290292
Merged-chr2-22747641-2	chr2	22747141	22748141	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26686.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	7.47549987181133	7.29177583554041	7.44630208571366	7.37825171307899	7.81061410691368	7.49308069892851	0.257679268145112	0.299472043518969	0.696241066794673
Merged-chr6-128854245-4	chr6	128853748	128854748	+	793.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-27933.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.66504450106329	2.56206101823423	2.71892009799855	2.54781414871106	2.66929377198925	2.5409108200767	-0.31929348786912	0.677479743365803	1
Merged-chr9-57708573-4	chr9	57708080	57709080	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153799)	promoter-TSS (NM_153799)	11.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	7.07685219936245	7.15446680932371	7.29748710010858	7.08301459240909	7.08701894663468	7.14611008194967	-0.105969512861715	0.654785461442346	0.903943534844702
Merged-chr4-59419347-4	chr4	59418823	59419823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 3 of 16)	L1MB3|LINE|L1	19310.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.17008871143336	3.85125581874712	3.9159354408623	3.84740572652544	3.289902957851	3.67305802253532	-1.19977343583179	0.0454354688729533	0.269088269873909
Merged-chr10-122054627-4	chr10	122054131	122055131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7316.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	5.46643077702909	5.58168135815034	5.18235318824428	5.31413981701565	5.43319728081918	5.0650179279224	-0.273190103067102	0.454706313483257	0.810532225390276
Merged-chr3-10273364-4	chr3	10272857	10273857	+	911.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	Lx8|LINE|L1	-19105.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	3.88726172803538	3.4718614614678	3.7071232430997	3.46925221424219	3.34901564942676	3.5681054284813	-0.862602951364085	0.143614782963152	0.505901480072731
Merged-chr1-191021350-4	chr1	191020836	191021836	+	836.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081259, intron 1 of 9)	intron (NM_001081259, intron 1 of 9)	-4015.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	3.99045432671094	4.09647046566549	3.91263048368007	3.98285241098288	4.14062775472191	3.82362998444709	-0.0221296480760285	0.965291857691715	0.991862148147202
Merged-chr17-84342579-4	chr17	84342101	84343101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	LTR40b|LTR|ERVL	123607.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.8624129328333	4.74552377192755	4.99453303206977	4.50428254677891	4.63971468537748	4.92356367594274	-0.39899178871793	0.333618638915272	0.724494720400407
Merged-chr10-18197411-4	chr10	18196878	18197878	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	13512.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	3.82211057212469	4.07608664405456	3.51818366416046	3.91680060609168	3.66816878784089	4.06592282641976	0.170937087444373	0.768546581976561	0.942871018290895
Merged-chr17-47767294-4	chr17	47766812	47767812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18432.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.47282649510957	7.72647224472353	7.55850992893289	7.60888429145235	7.61348261761042	7.34061675693648	-0.0852610128192962	0.718713776132437	0.92744740131865
Merged-chr17-69199121-2	chr17	69198621	69199621	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	39765.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.91989823999964	5.88923512525108	5.66744410253777	6.13414560884417	6.07664986484116	5.81300660298181	0.322764854672923	0.296254469626969	0.693022144754045
Merged-chr5-99279157-4	chr5	99278663	99279663	+	687.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26236.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.99479914652834	4.23748364747483	3.94051235328317	3.73426376379549	3.69982255411224	3.75008800426883	-1.08257733601091	0.0384270084786698	0.242652691924805
Merged-chr16-56029782-4	chr16	56029304	56030304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024622)	promoter-TSS (NM_001024622)	-87.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	9.03757342201203	9.32938403193576	8.69267629180726	8.89340087258361	9.05077459225889	8.69279918136508	-0.22000003916401	0.377095665563133	0.759616521190546
Merged-chr2-30409157-2	chr2	30408657	30409657	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 3 of 13)	intron (NM_007760, intron 3 of 13)	6591.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	3.54821052597259	3.10858709814521	3.42610124088993	3.45364406854685	3.18904099441056	3.32982107239747	-0.183589763112284	0.775008341467302	0.944524767111052
Merged-chr1-36570161-4	chr1	36569633	36570633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11752.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	7.1637865046231	6.90149056604794	7.32500584873896	7.16372612726718	7.42374371792749	7.33905077633957	0.270437451196912	0.290164084786264	0.687803696746587
Merged-chr17-47502901-2	chr17	47502401	47503401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	-610.0	NM_022015	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	5.88781912011413	5.74377573195159	5.94736398204997	6.10329088915504	6.13943869121024	5.96140903158984	0.383508859207868	0.19483863269787	0.582478818292114
Merged-chr11-8690474-1	chr11	8689974	8690974	+	713.0	f1_c57bl6.idr	Intergenic	Intergenic	-25939.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.05702224199026	3.30717217152809	3.28478116912011	3.46012968973409	3.30230135780377	3.41229987969297	0.684517417982326	0.272597554425381	0.669884740361107
Merged-chr11-114998148-3	chr11	114997619	114998619	+	766.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 3 of 3)	intron (NM_134158, intron 3 of 3)	3761.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	4.7594429583796	4.9107075794598	5.13262199585381	5.21734773975279	5.00107346636016	5.40459829207308	0.579102949713703	0.135974079265628	0.492894477986004
Merged-chr19-46003475-4	chr19	46002985	46003985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176785)	promoter-TSS (NM_176785)	7.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	6.52880384441495	6.59234713585311	6.58789959598493	6.69133651077326	6.5927626353076	6.77382660291379	0.179458049090709	0.483876565356252	0.826584678003739
Merged-chr14-57888460-2	chr14	57887960	57888960	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	1876.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	3.91034900312722	3.95102419669009	4.60568796684558	4.42841256309422	4.07859940885368	4.56085671944959	0.474893822951854	0.37955546038061	0.761960372847995
Merged-chr11-94678093-1	chr11	94677593	94678593	+	582.0	f1_c57bl6.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	-600.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	3.49727140240194	3.49913279597179	3.39681422599995	3.28076106384791	3.162389686481	3.41259670681914	-0.736492654491299	0.224909596764923	0.619819002536735
Merged-chr11-89090738-4	chr11	89090298	89091298	+	822.791687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 3 of 3)	B2_Mm2|SINE|B2	16957.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	3.47039623115963	3.37062182737085	3.80652748685598	5.16898927504732	5.04746810769813	5.61016642743651	6.79929730549651	4.60038931077031e-11	6.59981368569958e-09
Merged-chr2-79036497-4	chr2	79036009	79037009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166831.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	3.94599298047245	4.01925691179722	4.1226046660234	3.96099630109139	3.90389126001863	3.79974813301632	-0.406900797844313	0.418088617939821	0.788473936634102
Merged-chr12-12261410-2	chr12	12260910	12261910	+	662.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029758)	promoter-TSS (NM_029758)	-729.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.15661235768935	3.25094876883422	3.44215681159195	3.38223890811128	3.31917998650413	3.23438184925453	0.133874723985295	0.828911650312719	0.959925957873127
Merged-chr10-127195459-6	chr10	127194996	127195996	+	913.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045715, exon 1 of 4)	non-coding (NR_045715, exon 1 of 4)	213.0	NM_030714	80904.0	Mm.271724	NM_030714	ENSMUSG00000040415	Dtx3	Deltex3|mg310	deltex 3, E3 ubiquitin ligase	protein-coding	5.62550515184654	5.53995143251932	4.9427407311359	4.31943815204982	4.30975448091494	4.39437950786744	-2.4665836024891	2.22043584050215e-08	1.86248009492443e-06
Merged-chr18-36671504-2	chr18	36671004	36672004	+	613.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357512, exon 12 of 12)	exon (NM_001357512, exon 12 of 12)	-1193.0	NM_025291	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	4.45701232180233	4.64241462869907	4.79798029064761	4.95204738745083	4.91345479520858	4.66739956168006	0.521799983212194	0.20548416399972	0.596080597722807
Merged-chr8-78821052-4	chr8	78820537	78821537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001191004, intron 1 of 4)	CpG	115.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	7.13653136650672	7.28992916981304	6.84507970586357	7.17134224092373	7.04845331820705	6.77645582214647	-0.146571536555376	0.58781351179445	0.876090509043824
Merged-chr7-123429501-2	chr7	123429001	123430001	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	21684.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	4.85619087729505	5.18924681575151	5.15060904137672	5.12960911950478	5.01725939142312	5.27693711420551	0.137488765933644	0.715200543887747	0.926324353064633
Merged-chr5-88553341-4	chr5	88552889	88553889	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	6.6987874041535	6.7541210386336	6.74036457378499	6.8851978821866	6.89185310136327	6.88846437731266	0.245359855774372	0.31494291969304	0.709299260050302
Merged-chr11-19021150-1	chr11	19020650	19021650	+	748.0	f0_balb.idr	Intergenic	Intergenic	-2181.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	3.62481998296604	3.32919690687419	3.53578632754911	3.55793496345693	3.36165356312699	3.49823973337975	-0.109097486144944	0.853400809925926	0.965672676480491
Merged-chr15-75862287-4	chr15	75861799	75862799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026960)	promoter-TSS (NM_026960)	-40.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	6.74764513512392	6.79520377566122	6.69613382398604	6.77049275973391	6.86159861235161	7.04068916362278	0.218364939809025	0.387004212526586	0.767390671040563
Merged-chr17-86495056-4	chr17	86494557	86495557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 9 of 14)	intron (NM_011104, intron 9 of 14)	-207879.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.96164794153182	4.047065016813	3.95329808893809	3.74486374541019	3.64041646592628	4.1137884933691	-0.473748875686706	0.374836822667139	0.758128885281656
Merged-chr8-46846042-2	chr8	46845542	46846542	+	748.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008391, exon 9 of 9)	exon (NM_008391, exon 9 of 9)	106297.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.38251455269433	5.43439967722058	5.55527038951865	5.38335493364523	5.66059592130634	5.72114745015598	0.269097852099221	0.420888902385562	0.789961725604022
Merged-chr7-64872198-2	chr7	64871698	64872698	+	612.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_023239, exon 1 of 1)	exon (NM_023239, exon 1 of 1)	842.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	5.18451671739946	5.06182508604151	5.10478833139221	5.00350731291836	4.86400085045602	5.26400127833064	-0.164113146980181	0.662704995963409	0.906804932599005
Merged-chr7-80688247-4	chr7	80687706	80688706	+	844.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 1 of 14)	CpG	671.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	5.80200129662054	5.98638074427144	5.95353965588123	5.7280542147767	5.33354517102895	5.90026731400398	-0.460351038935926	0.173122122736394	0.551857854984095
Merged-chr16-11005637-1	chr16	11005137	11006137	+	623.0	f0_balb.idr	Intergenic	B3|SINE|B2	-3261.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.08483076946038	6.82108390686488	6.94722807510296	6.94640074191337	7.07785520844176	7.17215143616118	0.16804348299139	0.501130587424849	0.835440646332086
Merged-chr7-38271404-4	chr7	38270838	38271838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025390)	promoter-TSS (NM_025390)	10.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	6.60059856535717	7.03280523115742	6.65998275263035	6.78635785696923	6.89206208313325	6.88867075379117	0.10848099264878	0.689315364641178	0.917319650405699
Merged-chr1-125466063-2	chr1	125465563	125466563	+	713.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-30336.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.65978338232387	5.89040766067481	6.25807955304588	5.93994737510511	6.09520216099125	6.22241834148327	0.242889430901018	0.456762769533348	0.811823234093703
Merged-chr16-57345001-4	chr16	57344503	57345503	+	864.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	MERVL_2A-int|LTR|ERVL	-8274.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.11060941261735	3.28281754161445	3.09294634475065	3.48313536696035	3.69173466981472	3.62814258661188	1.71125304630558	0.00704884026754568	0.0785587866303162
Merged-chr13-20292523-4	chr13	20292041	20293041	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-180449.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.22234279650492	3.39321062528822	3.40813553712628	3.68672359247729	3.31817508492899	3.30689984548498	0.413457323291635	0.504725051965913	0.837806481766929
Merged-chr8-119792037-4	chr8	119791537	119792537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13621.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	4.98502903384546	5.1647337729744	5.37607900833624	5.19227303201781	4.8829301098182	5.49288268324511	0.0460291893079404	0.907985662789573	0.979092477540268
Merged-chr12-35833475-4	chr12	35832984	35833984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92137.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	6.05672419619176	6.27298709974488	5.93333049976274	5.15284659925086	5.33819497995421	5.39670169725272	-1.48072432992559	6.55054436776613e-06	0.000278976130003081
Merged-chr2-25422029-4	chr2	25421503	25422503	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1239.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	4.08486639847534	3.72558104592483	4.03961942247149	3.81093899450618	3.78999185382421	3.59242521686538	-0.685662241226953	0.210262386586471	0.60231737057483
Merged-chr4-117134755-2	chr4	117134255	117135255	+	937.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-792.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	5.7752149177482	5.84683638363892	5.87976913685516	5.70583901620659	5.82220715415562	5.60115070619193	-0.198820907361438	0.519686048265507	0.845958930747247
Merged-chr4-148676393-4	chr4	148675899	148676899	+	939.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33082.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	5.02135752337085	5.08963541978293	5.25805001962581	6.21693943699052	6.30408071110063	6.32883224884232	2.15318625885585	1.24230873539434e-11	1.97271040562389e-09
Merged-chr3-67583948-2	chr3	67583448	67584448	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	1180.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	5.2886622262962	5.21359490114783	5.15138588344692	5.06373297771764	4.98218867321612	4.93105583680311	-0.47778079115624	0.185386623151825	0.569470877644115
Merged-chr17-34836115-1	chr17	34835615	34836615	+	639.0	f1_balb.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	788.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	3.8746463590008	3.92498915067312	3.78445829112821	3.86240239624888	3.69462183844049	3.74923407484675	-0.315689847698385	0.545728293244017	0.85834429351586
Merged-chr9-106373092-4	chr9	106372558	106373558	+	838.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	4426.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.57946528413695	3.90038107013951	4.04347595786172	3.8232710633668	4.31453156661588	4.15710383104886	0.796577847451022	0.147438650842354	0.512335617398931
Merged-chr11-45944065-2	chr11	45943565	45944565	+	897.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028185, intron 1 of 3)	intron (NM_028185, intron 1 of 3)	870.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	3.53183226805374	3.58300400159559	3.37869462440768	3.49178641754617	3.53935548522954	3.45071251663901	-0.0335083180275065	0.95379819414809	0.989446911725587
Merged-chr2-118576928-1	chr2	118576428	118577428	+	614.0	f1_balb.idr	Intergenic	Intergenic	-21283.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	3.01276763385865	2.86284980738651	3.01517302595649	3.49436224648774	3.29709448997759	3.54363951589108	2.13180738305625	0.00173115041167681	0.0276691439598164
Merged-chr1-55430828-3	chr1	55430336	55431336	+	987.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24890.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.11762008095024	6.2869731042395	5.95541710020054	4.81511686183314	4.62453497075866	4.94638904151102	-2.68686526024781	7.60751451909609e-14	1.78311568480267e-11
Merged-chr6-34476219-4	chr6	34475728	34476728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007563)	promoter-TSS (NM_007563)	-128.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	5.72969005933867	5.99982041597709	5.91037646539496	6.14211154187989	6.14623756204092	5.68141959917436	0.236289221679566	0.463380136672106	0.81583286097592
Merged-chr2-28478816-3	chr2	28478299	28479299	+	915.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10733.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	3.57193792122226	3.98183632429078	3.69754561297269	3.42435041449336	3.54947851046058	3.55292080856733	-0.887255784348769	0.125688808241848	0.474301999544486
Merged-chr8-105340032-4	chr8	105339519	105340519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7951.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.87971469156359	6.77386056448704	6.68109307495733	7.26351586251424	7.42591641323464	6.68864551824736	0.59708639239437	0.0414444273181117	0.25448364757475
Merged-chr11-107384394-2	chr11	107383894	107384894	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	86326.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	2.78019275125957	2.77569174956086	2.8020186517888	3.07642908798453	2.84287511616468	3.38582250283573	1.55976942894952	0.0339696947213901	0.225474403344775
Merged-chr11-104442955-4	chr11	104442450	104443450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-659.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	7.63507800115079	8.10430301968759	7.83361221759212	7.86810294835407	8.04056610760874	7.85713803957347	0.0748468929981876	0.75681188959238	0.93970656029399
Merged-chr10-50763161-4	chr10	50762667	50763667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-132484.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	6.19489281498752	6.37429304561976	6.50241256543964	6.43357917179923	6.56301399536849	6.43705764841152	0.207517105025657	0.449519471760504	0.807826775986513
Merged-chr4-12460355-3	chr4	12459860	12460860	+	644.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288345.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.72853033314615	3.51054368944496	3.86923341512523	3.65412928737296	3.7868039278703	3.46277245095214	-0.187818096525768	0.744865136829426	0.936032341688524
Merged-chr8-41100532-3	chr8	41100022	41101022	+	758.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 1 of 13)	MTC|LTR|ERVL-MaLR	14145.0	NM_001286413	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	2.25223658986285	2.57708361680639	2.45032003118662	2.77388662189085	2.43870704520446	2.65573885353494	1.13352723062476	0.187389991105813	1
Merged-chr9-108809442-4	chr9	108808940	108809940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030729, intron 1 of 12)	ERVB4_1C-LTR_Mm|LTR|ERVK	1060.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	5.72413358822823	5.40010222974419	5.92794659660167	5.65161079920995	5.66664238783656	6.01002789531478	0.156553951785337	0.650786874203097	0.902679133140395
Merged-chr2-51305548-5	chr2	51304975	51305975	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63644.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	5.48456153535355	5.79082644711155	5.44992998535996	5.77556840074564	5.61159083046723	5.13610454218561	-0.0829151979218821	0.823020819783921	0.958214218900685
Merged-chr11-82073193-4	chr11	82072706	82073706	+	932.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15374.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	2.27442068860362	2.24483624754586	2.54752770657918	2.27121798029219	2.37929860376608	2.37418910303972	-0.0936087004710581	0.912084327486168	1
Merged-chr15-81199503-4	chr15	81198940	81199940	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8587.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	5.53174131506985	5.87293547545474	5.60758341031511	5.91864722223354	6.09664997077404	5.72582119390572	0.448647177107015	0.171234116694014	0.549227059666778
Merged-chr12-3352910-2	chr12	3352410	3353410	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12222.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	4.0314505687324	3.95573335560143	3.90591524475603	4.29329953797123	3.84627146728537	4.29880467034255	0.548418402005235	0.288427410221676	0.685876372615419
Merged-chr17-34637591-2	chr17	34637092	34638092	+	956.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7291.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	6.6777314858703	6.6931300364888	7.1328466499978	7.09470206986549	7.21474437134778	7.14244875728937	0.477627244615194	0.071681481765204	0.351243904052711
Merged-chr19-10842454-4	chr19	10841949	10842949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-95.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	8.7085650429907	8.59363359661059	8.25756243881847	8.48407513336886	8.63920249036245	8.28047527744582	-0.0806669694939198	0.733165632343439	0.932039456283818
Merged-chr10-118101304-4	chr10	118100802	118101802	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40485.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.39880622320314	7.24318342147254	7.04878016626065	7.24848651297704	7.31910598658845	7.00986681346123	-0.0568825330850683	0.821860014714974	0.958023303204974
Merged-chr12-85497499-4	chr12	85497005	85498005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23615.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.0727958125271	7.78957198455119	7.64063657393771	7.90043475915839	7.99211905168252	7.08502463246474	-0.172035137731847	0.579411966504973	0.87250443698034
Merged-chr16-97472685-4	chr16	97472188	97473188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 7 of 7)	L1MB7|LINE|L1	-9782.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	4.87742592444253	5.07036966352893	4.99518695856241	5.04521745019606	5.3045345945213	5.12970632648152	0.39440727590444	0.287478436495749	0.684740639605593
Merged-chr1-152612893-4	chr1	152612402	152613402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	12315.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.1581887032624	7.15168335429811	6.90331732669634	6.96558034578898	6.90192033917238	6.71188633705057	-0.325799677573254	0.198227550790815	0.586478383096365
Merged-chr2-71500056-4	chr2	71499582	71500582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-29363.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	4.29607118386148	4.53851857228547	4.67914773243137	4.26432743535297	4.09383134587838	4.39122923348106	-0.684874099250404	0.139229903166791	0.498538677283
Merged-chr15-6708882-3	chr15	6708386	6709386	+	885.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	505.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	6.21220073323701	6.2326206483972	5.85615018523027	6.14720699997403	5.67701752250823	5.7302098699063	-0.434341203774306	0.187734753629374	0.572987312749648
Merged-chr7-4657720-3	chr7	4657252	4658252	+	685.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	L2c|LINE|L2	1198.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	5.55473944016746	5.33073490783541	5.92238888531962	5.92185460566827	5.64470200951301	6.20648348369721	0.578970370600759	0.10996248068539	0.443259712798868
Merged-chr5-43801981-3	chr5	43801503	43802503	+	817.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie9|DNA|hAT-Charlie	-16890.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	3.2637611423052	3.26127017097493	3.5726406020681	3.28898414475966	3.11601512291084	3.15346154960004	-0.732467281540223	0.250800391144279	0.648153521953385
Merged-chr2-169932030-2	chr2	169931539	169932539	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31148.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.40824478308968	3.32229604134038	3.44279881533363	4.0730236168005	3.65829167015683	4.11811928508796	1.9841519914757	0.000832117416679473	0.0156119111628107
Merged-chr1-183266275-4	chr1	183265762	183266762	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-30798.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	6.4354169290963	6.42328436100913	6.35263520216701	6.56118868225103	6.65672688045386	6.54172146366433	0.297354577395523	0.254668517998756	0.651733347039445
Merged-chr4-58913355-2	chr4	58912855	58913855	+	583.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-606.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	5.59545845906184	5.8332057031352	5.94524482093821	5.49623916361418	5.58228313157034	5.61217586466365	-0.421988207741114	0.19180768357821	0.578614861877813
Merged-chr17-6747058-4	chr17	6746578	6747578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	35702.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.22860514345722	7.00536424970671	6.34061056152832	6.63242384651823	6.57558269108967	6.50190146616338	-0.547468917188306	0.0852446783709649	0.386436349653568
Merged-chr10-63246180-2	chr10	63245680	63246680	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	2383.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	4.73127618299567	4.7196916223512	5.2394081988987	5.25764169311648	5.38151718133448	5.55377721779738	1.02910788926604	0.00872591133932582	0.0916402411615074
Merged-chr16-17881047-3	chr16	17880539	17881539	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	B4A|SINE|B4	10689.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	3.06622810672178	3.04194615247976	3.08129817223742	3.03238561507199	2.92791490214364	3.15301167915224	-0.125936317629846	0.848857203538992	0.964439759026605
Merged-chr14-59365486-4	chr14	59364985	59365985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199015)	promoter-TSS (NM_199015)	5.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	6.49421776553122	6.59242648575704	6.50509903576171	6.51233803073956	6.82643869185287	6.63337747232994	0.218979893688698	0.411585047885696	0.783993055982259
Merged-chr5-43853441-4	chr5	43852925	43853925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15384.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.72656461610718	6.90868581340191	6.6890701129337	6.02463634626036	6.12067026900221	5.98547661891753	-1.19375356935763	1.38709878907817e-05	0.000531389116213702
Merged-chr1-86415136-2	chr1	86414636	86415636	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11193.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.08833362919426	3.0403386517302	3.17126150451823	3.11871452277402	3.19943346951486	3.35131003580804	0.541644199942493	0.397160768009149	0.77406346769465
Merged-chr12-34665000-3	chr12	34664508	34665508	+	715.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-136119.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.39889395438056	3.40108808746897	3.53171351989283	3.80420750954839	3.55716893956683	3.60291226670624	0.784071937975962	0.169726082330341	0.546814103788402
Merged-chr12-65039467-2	chr12	65038967	65039967	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	3133.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	3.681089369923	3.61392292624655	3.51201449445222	3.69324845457541	3.64020840655077	3.89378876735328	0.445768195005452	0.419898476656187	0.789348043413415
Merged-chr1-33877525-2	chr1	33877025	33878025	+	825.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	ORR1A3|LTR|ERVL-MaLR	30096.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	6.59998803148736	6.61318749259126	6.04430890604889	6.13334861294323	6.29368840426954	6.3245582267657	-0.338860358097345	0.268922064842988	0.66606540174
Merged-chr19-12008944-2	chr19	12008444	12009444	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27796.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	3.59484694747411	3.67271847577391	3.74186113016798	3.76110655372226	3.47942964762262	3.48930017625408	-0.294660026476435	0.601859277678644	0.882147380255146
Merged-chr13-60612353-4	chr13	60611841	60612841	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	10130.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.08047501275964	4.08936052748524	4.52767382381152	3.71684651812286	3.88426667056589	4.51974358115132	-0.447474435423887	0.435353001035761	0.799001636162842
Merged-chr1-51911407-1	chr1	51910907	51911907	+	681.0	f0_balb.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	4571.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.10890528771381	2.04178909273011	2.34137503961211	1.89409172047559	2.09845875091799	2.16237954452989	-0.823943519848876	0.394247447085022	1
Merged-chr1-59119869-4	chr1	59119344	59120344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037812)	promoter-TSS (NM_001037812)	-38.0	NM_001037812	381259.0	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	5.29597873438237	5.47122082902096	5.37250978812725	5.53505235085882	5.14017673364097	5.21108978639738	-0.15163830419092	0.671033639451893	0.910289924720412
Merged-chr10-126979589-6	chr10	126979138	126980138	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	CpG	921.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	6.39648377290724	6.32902250784497	6.70907628345173	6.34042139891146	6.08573715496627	6.48069361413676	-0.290981911697818	0.326128141302803	0.718551386027045
Merged-chr18-84274057-4	chr18	84273573	84274573	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	185915.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	3.91388006470822	3.81550719015072	3.92323751303306	3.82044117175389	3.49985842303042	3.84573644902698	-0.522898455228607	0.335388473329204	0.725511519189957
Merged-chr5-64203334-2	chr5	64202834	64203834	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27023.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.57544755948581	4.90548843593651	5.39299577245666	5.2526848960859	5.02056818430339	5.22402804013075	0.36938689851216	0.389917864410353	0.769401696657453
Merged-chr18-50113008-5	chr18	50112497	50113497	+	854.434265	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-15204.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.50366182007464	4.72279372510501	4.80225497081776	5.42965346293238	5.73678918148777	5.29931718371875	1.76463689334883	5.10464734794149e-06	0.000225569567991246
Merged-chr3-103916671-4	chr3	103916170	103917170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	2550.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	5.43993658519171	5.4227263977405	5.8480533305969	5.87301627291679	6.14935080025954	5.78619439336149	0.695356504112177	0.0385832802700161	0.243454734564912
Merged-chr12-110855610-2	chr12	110855119	110856119	+	710.5	f0_balb.idr|f1_balb.idr	exon (NM_001199785, exon 2 of 7)	exon (NM_001199785, exon 2 of 7)	5340.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	6.04854323003932	6.27149917992273	5.95985524102	6.06901850493987	6.05361700131156	5.84565958382582	-0.184588604977956	0.539302344776287	0.855849474290651
Merged-chr6-145274308-4	chr6	145273807	145274807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23755.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	5.43144538475999	5.19535685792046	4.93625969048682	5.11794335500461	4.83210522392522	5.48366549239968	-0.104693483006129	0.799890881525984	0.952342612036603
Merged-chr15-30611331-2	chr15	30610882	30611882	+	632.625	f0_balb.idr|f0_c57.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427744.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	5.6081002814613	5.56609066822379	5.83902324052454	6.08387980989438	6.13965309750288	6.0837603325614	0.77825524693522	0.00973279758039347	0.0986414885589987
Merged-chr4-126136956-4	chr4	126136473	126137473	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 8 of 10)	intron (NM_028800, intron 8 of 10)	-11030.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	4.26156829869335	4.3129731399763	4.41125200483225	3.73056798907814	3.76470201573615	3.99228701413967	-1.49558203198305	0.00288285005839687	0.0408369403573522
Merged-chr1-189871772-3	chr1	189871170	189872170	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	50621.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	2.98672274845143	3.1864540878352	3.31494330017254	2.8078565008993	3.01753016014212	3.11213984310996	-0.816544914996159	0.241059728382105	0.638142589692613
Merged-chr8-79370771-4	chr8	79370244	79371244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	28724.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.1520097345357	5.86782905969379	6.18037260041147	6.15904302066238	6.24541388726755	5.97435779346453	0.121824364356702	0.684836157563041	0.916035928408467
Merged-chr1-86154736-4	chr1	86154259	86155259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-21.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	6.01539908810523	6.18810589124904	6.20530695878115	6.26976989542036	6.34055977639657	5.89767346111572	0.102037443923531	0.735208523963868	0.932617455907478
Merged-chr7-19665789-1	chr7	19665289	19666289	+	710.0	f0_balb.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-759.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	6.72536164239478	6.77599057494557	6.86721892812614	7.00285634053427	7.2835811117918	6.78925653155812	0.408899420116942	0.125734887933806	0.474409311893896
Merged-chr1-181950913-4	chr1	181950409	181951409	+	866.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	69071.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	3.71201205943521	3.77948684237515	3.86370302562426	3.93781938620076	4.31928868016889	3.93412405147662	0.93111230261512	0.0755129959249918	0.361794516319843
Merged-chr8-69716529-4	chr8	69716024	69717024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359086, exon 1 of 6)	5' UTR (NM_001359086, exon 1 of 6)	378.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	8.74114963715167	9.25981294234022	8.73353649545771	8.78437341097899	9.06539821332177	8.7745344884646	-0.0769090399737708	0.755896832590381	0.939495792549816
Merged-chr10-42245081-4	chr10	42244580	42245580	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	31662.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.90245896105997	4.48539412727124	4.47483961261979	4.87579726313011	4.55896544970133	4.79104178897965	0.232046510724478	0.597115538808729	0.880155708648303
Merged-chr10-60733454-2	chr10	60732954	60733954	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	19328.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	6.13693443689208	6.29754979594653	6.05234162833941	6.42305367909717	6.48096582467352	5.77583333947595	0.180193251966418	0.585646027430488	0.87509310509708
Merged-chr7-126749605-2	chr7	126749105	126750105	+	894.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10021.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.8525099488162	5.21382042255526	5.08444122973828	4.85315509270352	4.80399576380905	5.11545816645231	-0.299517087307444	0.445130165526058	0.804872520246951
Merged-chr5-135480734-2	chr5	135480234	135481234	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	AT_rich|Low_complexity|Low_complexity	64388.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	3.48696515775225	3.67177879980225	3.5621978488959	3.66960386029189	3.40891626971468	3.73649238579327	0.0970347097323669	0.865875220512462	0.968641478520565
Merged-chr19-5928792-3	chr19	5928254	5929254	+	868.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3938.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	4.69949402526125	4.44639172377663	4.28941769935613	4.72646393422971	4.31979483532067	4.77821143696844	0.288542947728899	0.533500958612756	0.852484319020423
Merged-chr11-107469835-4	chr11	107469334	107470334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	CpG	886.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	8.68505025382422	8.9385014578331	8.71390275290317	8.62862756858932	8.94991535781672	8.73632972616866	-0.00610232759279916	0.977605268879092	0.994887548257726
Merged-chr2-45239932-3	chr2	45239415	45240415	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122473.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.3808512183018	7.32920360390096	7.22965200756599	7.0108998850135	7.37709081568144	7.46108285580748	-0.0319598208139017	0.899058492595997	0.976456276294408
Merged-chr10-99485762-3	chr10	99485276	99486276	+	759.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123395.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.64948970444207	3.39697411990785	3.85785296699556	3.34514203594694	3.54161480626981	3.73730222040011	-0.330826000109752	0.582360910955881	0.873702353685426
Merged-chr14-66871705-4	chr14	66871123	66872123	+	929.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001034881)	TTS (NM_001034881)	2773.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	5.94604085315181	6.11593839571872	6.33507325628863	6.38850090420524	6.61806911877776	6.23617746872974	0.500545051583246	0.0931584186043842	0.40657919757719
Merged-chr1-170998887-2	chr1	170998387	170999387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-20039.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	8.01139455761965	8.2418132886819	7.82351036348575	8.13088616089604	8.54216216727439	8.13474557578718	0.348206102942164	0.162824850989959	0.536188662408322
Merged-chr8-120488843-3	chr8	120488326	120489326	+	977.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-40.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.89818233652652	7.14102521580167	7.07171493846357	7.03130902421809	7.19305493794474	7.02446498311707	0.0754614019860809	0.759074082456967	0.940311236380535
Merged-chr4-118137576-2	chr4	118137076	118138076	+	570.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161823, exon 22 of 22)	3' UTR (NM_001161823, exon 22 of 22)	-2630.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	3.21938256889568	3.23902809528312	3.00059991983739	3.04337500816952	3.25245878973871	3.31011008391666	0.181503843416418	0.78294323866569	0.946833581227703
Merged-chr8-46596859-2	chr8	46596359	46597359	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	20368.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	5.14045647954099	5.28150571200492	5.56833101649153	5.27051540359187	5.09535944569295	5.41272177097394	-0.150651828728352	0.681200056166652	0.914599647187446
Merged-chr8-26978708-4	chr8	26978221	26979221	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1385.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.86289553172231	7.12670780858162	7.30144043450625	7.01929266089633	7.08076020194091	7.3373961829829	0.0669070241508227	0.799638918339187	0.952263864378888
Merged-chr3-52048325-3	chr3	52047839	52048839	+	846.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	56667.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.4768339040646	3.56266938770996	3.83174687270779	3.49010372382775	3.15387245657814	3.44760635586776	-0.966605625676493	0.117396514903023	0.45752213648839
Merged-chr7-67244681-2	chr7	67244181	67245181	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	intron (NM_001357324, intron 8 of 11)	22065.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	7.34751726667822	7.6663142034284	6.8788020650871	7.10679313205195	7.53000025862268	7.02704043910522	-0.145676950588584	0.637942281997269	0.897380718500389
Merged-chr8-19563310-3	chr8	19562830	19563830	+	905.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68233.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	3.33551074862888	3.22500125901236	3.22290058294531	3.16910468131	3.287405047635	3.11580336455979	-0.270536989020078	0.66852876921486	0.909204788456481
Merged-chr10-82959362-1	chr10	82958862	82959862	+	623.0	f1_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-26135.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	2.56313579621906	2.49066291579824	2.85138504765968	2.64728869214434	2.44672899946497	2.42727856720713	-0.734876983438895	0.367326832705998	1
Merged-chr6-15626325-4	chr6	15625835	15626835	+	831.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94326.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.86151833389988	4.19712904184192	3.7432035914555	4.04191112452152	4.02464795934315	4.02508943507358	0.210629344818042	0.687278726215026	0.917047598635342
Merged-chr15-99833350-2	chr15	99832850	99833850	+	684.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-13201.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	2.65436422016417	2.75947930895462	2.65443233639335	2.73949481049979	2.5090217361584	2.7902696742084	-0.0636804221077222	0.933260031906691	1
Merged-chr7-80091940-2	chr7	80091440	80092440	+	856.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16683.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.09516113655251	5.11279450403452	5.54942343891809	5.27538396684165	5.11107845620095	5.68512463060595	0.217595758228625	0.580181949837665	0.87276422265422
Merged-chr4-43820377-4	chr4	43819873	43820873	+	820.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019474)	TTS (NM_019474)	1060.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	3.51998127766614	3.43161820765091	3.50607986536444	3.50624447255724	3.45057122672784	3.68032942359519	0.208738802216784	0.715047873070644	0.926256933314498
Merged-chr10-8759384-4	chr10	8758886	8759886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	126684.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.2859191844788	7.44697193271287	6.97359713584303	7.07596788607325	7.32776503770116	7.0311525879554	-0.151189680316661	0.56799813904102	0.868467275878816
Merged-chr17-5631133-2	chr17	5630633	5631633	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	138533.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	2.94945702823049	2.55504506221144	3.02395602199027	2.50470300497379	2.37346176929723	2.81034238469716	-1.57438210285345	0.0681842055645321	0.341651895496422
Merged-chr16-32178020-2	chr16	32177520	32178520	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1780.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	6.32323032968504	6.10936618094143	6.35556698032538	6.21118078910076	6.42563141010494	6.50451380172077	0.201134331293886	0.478406678018823	0.823808755294597
Merged-chr7-139402946-4	chr7	139402448	139403448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	L1MB5|LINE|L1	2454.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.86254209562617	3.4346270843095	3.76994365777864	3.86772088149828	3.63426877231263	3.78901819434367	0.210275329457158	0.710790214043529	0.924477250959499
Merged-chr14-75183037-1	chr14	75182537	75183537	+	783.333313	f0_balb.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46612.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.44102781551795	5.55718928327813	5.39964530115036	5.5979271252643	5.36055781211119	5.66000255281021	0.122049918816261	0.715987100758572	0.926538389025079
Merged-chr5-107966391-2	chr5	107965891	107966891	+	659.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20686.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.33369379675556	5.32655510324815	5.41529913011238	5.26791354704715	5.52240511803832	5.64282621419326	0.247398061284868	0.469369428394621	0.818977178978635
Merged-chr17-43058816-4	chr17	43058302	43059302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	MTD|LTR|ERVL-MaLR	42247.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	8.32914269817975	8.50822618682806	8.03608033090005	7.74338070319758	7.84714849628863	7.58435684045593	-0.81755833875933	0.0006577456069645	0.013039631836374
Merged-chr11-23217627-4	chr11	23217124	23218124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38417.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	5.28489213047764	5.66208359843121	5.29846558218516	5.11767613003517	4.78017082469559	5.39212969236583	-0.657685712655165	0.0968187511025928	0.414770871736835
Merged-chr11-84442405-2	chr11	84441905	84442905	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019816, intron 12 of 12)	intron (NM_019816, intron 12 of 12)	71096.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	5.74022273534108	5.472732921064	5.04696877642845	4.46904509090797	4.60511321414187	4.52750799725176	-2.00757537709022	2.14784974330254e-06	0.000106316645711313
Merged-chr17-30003535-2	chr17	30003035	30004035	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1504.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	5.1025038376959	5.07191864723005	5.276101612555	5.16594482926803	5.24923818950987	5.42720933810415	0.272440716092267	0.444252110385379	0.804143628616024
Merged-chr2-160366262-2	chr2	160365762	160366762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010658, exon 1 of 1)	exon (NM_010658, exon 1 of 1)	803.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.60609958360112	6.65340128457432	6.90572165498396	6.6107481586467	6.63703113846039	6.68556173979883	-0.120832274076325	0.643514221494182	0.89983415692683
Merged-chr9-24500441-2	chr9	24499941	24500941	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	intron (NM_001359948, intron 1 of 22)	2699.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.52642010829873	3.52371782954299	3.84598823954513	3.81489648755592	3.49883229318417	3.96043936712769	0.43856491909711	0.448405214126976	0.807245803917729
Merged-chr19-29470144-4	chr19	29469629	29470629	+	893.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	51858.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.21495295911348	5.14453422884842	5.09056575375067	5.11358916425508	5.26969776396018	4.8540574352622	-0.100926145362272	0.78807357986399	0.948849302309726
Merged-chr6-120155036-4	chr6	120154546	120155546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	7.58600001012823	7.34460094563799	7.43144470887832	7.25656912035312	7.50718471266333	7.32575452954081	-0.127327375157361	0.593295492493964	0.878446409826645
Merged-chr10-22744427-2	chr10	22743927	22744927	+	572.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12980.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	4.15321525199952	4.04675940985216	4.52823405000124	4.00911441600546	3.39194571856003	4.06150484078716	-1.17655836479921	0.0497627164414592	0.283762018262861
Merged-chr4-130919425-4	chr4	130918913	130919913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6079.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	7.98074289075495	7.85034942193593	7.83596344370342	7.85708867785122	7.88093529310321	7.52247360190595	-0.172736685156432	0.455472896131718	0.81093772016868
Merged-chr4-154933630-3	chr4	154933150	154934150	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5573.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	6.16023940324719	5.66045228262781	5.70540164956744	6.78523829644418	6.73452757610126	6.49667199993418	1.34154128871058	2.03810994776461e-05	0.00074222032365423
Merged-chr17-63909539-2	chr17	63909039	63910039	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 3 of 18)	B3|SINE|B2	-28433.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	2.76494552610342	2.89169098062597	2.9519915028038	3.1282772515873	2.91421539989209	3.14118951688072	0.910930963391016	0.189207454664541	0.574868493270401
Merged-chr8-114440062-4	chr8	114439545	114440545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 1 of 8)	CpG	393.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	5.68990384703496	5.63178269740523	5.45086011808937	5.44104211508517	5.71105334753679	5.68436957538269	0.0316240589033373	0.923331095741889	0.982699256056545
Merged-chr2-113398357-4	chr2	113397855	113398855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-42709.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.49288306702041	7.68165141815311	7.04447730301593	6.88180851494642	7.20251925695041	6.67990031035171	-0.733301081714041	0.0134855747840271	0.123620987840623
Merged-chr2-35461494-6	chr2	35461019	35462019	+	773.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145821)	promoter-TSS (NM_001145821)	-70.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.31027152948953	5.5820021795197	5.64027080446378	5.18321469645811	5.13984298263661	5.17558767171037	-0.691218792455681	0.0481300531665391	0.278130805186567
Merged-chr2-48916042-3	chr2	48915548	48916548	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	33219.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	2.64217829843358	2.50621366772619	2.54080495486474	2.64869266802753	2.62940632337435	2.79976853986855	0.711902788989006	0.351162327282758	1
Merged-chr6-116664255-4	chr6	116663757	116664757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	9579.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.47790202021609	7.1549384331417	6.69725757023846	7.14738208599525	7.02697687798836	6.72203296715595	-0.266904560855505	0.382513553984544	0.764072109658775
Merged-chr10-17201296-4	chr10	17200786	17201786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105504.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.44789969290148	5.26821519119807	5.37615848188159	5.67196301228743	5.65105345549114	5.69449630858429	0.581016945957884	0.0733664657159558	0.355874832650883
Merged-chr4-152087903-4	chr4	152087367	152088367	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104381, intron 2 of 21)	intron (NR_104381, intron 2 of 21)	1004.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	2.13320746374831	2.12712119568826	2.23195612644112	1.84495946915597	1.86041910890651	2.11239402716225	-1.92718443269558	0.0624053391810985	1
Merged-chr18-39442514-4	chr18	39442052	39443052	+	732.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	44693.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.27356883480429	4.23129434629329	4.40146598279518	4.25008307365228	4.40429141282052	4.24817009076717	0.0286912297191311	0.94945121109594	0.988195309248553
Merged-chr17-24849377-3	chr17	24848911	24849911	+	833.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023480, exon 1 of 1)	3' UTR (NM_023480, exon 1 of 1)	891.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	7.15504261383668	7.43293920339055	7.25036561899534	6.85284793447473	7.33153313364973	6.94722877440983	-0.321720392383518	0.233202165292997	0.629641306045157
Merged-chr19-29431663-4	chr19	29431150	29432150	+	819.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	MTEb|LTR|ERVL-MaLR	20731.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.16867999763482	5.97493972563448	6.37555780116741	6.3389991780999	6.56821472803583	6.52329064044662	0.511045538844722	0.0764020053653728	0.363979048576774
Merged-chr1-23917036-1	chr1	23916536	23917536	+	585.5	f0_c57.idr	intron (NM_001357395, intron 1 of 10)	RMER4B|LTR|ERVK	5345.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	2.77380882086169	2.80710427335698	2.96563189634526	3.18214614870176	2.89968695650723	3.26525548312905	1.28775990158234	0.0689783773423078	0.343611592199544
Merged-chr5-75043306-2	chr5	75042806	75043806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	1335.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	4.75916539081909	4.73631956450097	4.92631412978592	4.98199621220849	5.00188831565177	5.30957565371524	0.641773092323179	0.0971712308125868	0.41563891294164
Merged-chr9-36726680-4	chr9	36726143	36727143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007691)	promoter-TSS (NM_007691)	15.0	NM_007691	12649.0	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	4.87397398346336	5.2310232728928	5.37908612038751	5.19092379515595	5.29197510571677	4.86715397830821	-0.0640114634685229	0.872239620266891	0.970261003150518
Merged-chr4-133056169-4	chr4	133055602	133056602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	44596.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	4.04325287473792	3.8488112789599	4.11652496983505	4.13509098481282	4.02981876422202	4.27238506307646	0.408569397163448	0.405913708021865	0.780439975167702
Merged-chr2-164868652-4	chr2	164868164	164869164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10704.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	6.2174584673474	5.8460139296256	6.0064786344505	6.16076789402498	6.43216396935487	6.51969643983417	0.57616455210762	0.0572057590931955	0.308462834699913
Merged-chr13-81793982-4	chr13	81793472	81794472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 4 of 4)	intron (NM_007684, intron 4 of 4)	10725.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	3.86052887993218	3.85349548501185	4.11580309328413	3.80222095284505	3.63506550589689	3.70169259952852	-0.736667529733351	0.16598553099523	0.541109862183596
Merged-chr15-59721208-4	chr15	59720716	59721716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72562.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.62300373835591	6.69182452936037	6.83918707138813	6.49729758781706	6.37601491532922	6.6581673644299	-0.333525445143016	0.210315914010006	0.60239412634554
Merged-chr11-100321895-6	chr11	100321393	100322393	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011508, exon 4 of 4)	3' UTR (NM_011508, exon 4 of 4)	1944.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	5.44289885555977	4.87891271972714	5.23510086819233	5.32158720429012	5.50161562102691	5.50920100459298	0.474346324686399	0.207405061683947	0.598179871785661
Merged-chr9-107288922-4	chr9	107288418	107289418	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	478.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	6.15371486251166	6.13058036101273	5.61545516047046	6.85490514011188	6.83353454864616	6.4414293916185	1.18225218549486	0.000237465329657198	0.00575368395765777
Merged-chr5-65763573-4	chr5	65763071	65764071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024917)	promoter-TSS (NM_001024917)	50.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	6.43987220215399	6.60492360804621	6.64559923585622	6.74825600109377	6.12889407465066	6.60730344270546	-0.079155024791972	0.794434778144831	0.950711250903359
Merged-chr9-105494086-3	chr9	105493579	105494579	+	895.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359822, intron 2 of 28)	intron (NM_001359822, intron 2 of 28)	1054.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	4.81441995763159	5.316917047628	5.21538675855067	5.16782845721997	5.55438563081947	5.24708003615751	0.422730329958176	0.279722765891571	0.677383093273448
Merged-chr3-121841045-4	chr3	121840512	121841512	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-25710.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	5.26396505862098	4.44910680254151	5.19294899274526	5.90070300232852	5.41811412351373	5.58684232233102	1.2414407863683	0.00477922379900358	0.0593256871013231
Merged-chr17-71191259-2	chr17	71190759	71191759	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	MTE2a|LTR|ERVL-MaLR	7281.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.73895756778794	6.45510316091168	6.59072404872369	6.78184987525266	6.97508548191911	6.77965753702146	0.398234080446989	0.130181801507836	0.482437417710952
Merged-chr6-88840923-2	chr6	88840423	88841423	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155424, intron 1 of 11)	intron (NR_155424, intron 1 of 11)	1012.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	4.08059840388249	3.98082370757448	3.98725790038642	4.03916002496743	3.96445887166975	4.10378243100218	0.0404520925512254	0.933714380782052	0.985581479569838
Merged-chr13-8645465-4	chr13	8644988	8645988	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	225556.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	6.71599870015452	6.67044888727675	6.54113008508159	5.86615616163899	5.90423563949349	5.92237290905943	-1.25371217009608	5.6596326287945e-06	0.000245402142666354
Merged-chr17-63198882-4	chr17	63198361	63199361	+	872.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	114112.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	3.08905587092091	3.06931779962281	3.48690414976921	3.24449423269858	3.03490927385889	3.06307391068406	-0.442927450988233	0.51070132349009	0.841033023631175
Merged-chr16-24826574-4	chr16	24826056	24827056	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	104701.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.51079749917187	4.30914867826947	4.76612486646215	4.15076106452905	4.05045325155831	4.04094921479741	-1.21207919970492	0.0113845733750472	0.110175340938698
Merged-chr17-4994394-4	chr17	4993891	4994891	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085355)	promoter-TSS (NM_001085355)	-683.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	7.28000022304211	7.18143206373479	7.14172838730853	7.33423917286324	7.23294743268316	6.94117939672818	-0.0250886793572614	0.919528809660583	0.982034101943453
Merged-chr7-127233155-4	chr7	127232648	127233648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030674)	promoter-TSS (NR_030674)	-18.0	NR_030674	100043580.0	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	5.97575303529947	6.03593065660416	6.0979819476529	6.17144191949831	5.81284062487932	5.9314980887547	-0.0979105524438365	0.745859886894986	0.936251303305737
Merged-chr1-91087067-4	chr1	91086500	91087500	+	853.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	33556.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.6603887210206	3.72826220694056	3.85640387134683	4.01058557102908	3.98614413848174	3.82404776717297	0.642298014547278	0.21574870780445	0.609112973600893
Merged-chr5-148452074-2	chr5	148451574	148452574	+	808.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52170.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	4.0024428482363	4.11837590658559	4.07675666487933	4.10997482057443	4.05415203171779	4.14507539305141	0.0971852244824096	0.838454220855827	0.962518552953479
Merged-chr9-118700880-2	chr9	118700424	118701424	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-10768.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.46548409022499	3.51970890216204	3.80750563151982	3.59929152081691	3.51543747083186	3.96293084791685	0.34818907762941	0.55268942643635	0.861859066495732
Merged-chr18-36749256-4	chr18	36748756	36749756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011879, exon 7 of 20)	exon (NM_011879, exon 7 of 20)	4600.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	6.48386695450126	6.63075295508069	6.57103408455846	6.49813686889466	6.68445555622785	6.64667404078708	0.0802861407609796	0.758385718013373	0.940121252394213
Merged-chr15-39609927-2	chr15	39609427	39610427	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-49584.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.63716958499479	3.77861298229001	3.57936647565037	3.58928364649167	3.6684517803404	3.85588778537207	0.105729394014571	0.847882157319026	0.964318271116593
Merged-chr3-105865231-3	chr3	105864750	105865750	+	725.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-5608.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.60555501254056	3.49115805056832	3.31610275833227	3.45145604677389	3.53808652777925	3.55926757358567	0.123119867195864	0.833564226627084	0.96108264611081
Merged-chr19-12026908-3	chr19	12026437	12027437	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9803.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	2.98690147384207	2.96132881908464	2.71445678169319	2.83399989885626	2.98842965366998	2.97869195902352	0.178800312928259	0.803708589342895	0.953517991046462
Merged-chr1-172499834-4	chr1	172499332	172500332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178598)	promoter-TSS (NM_178598)	-414.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	5.59666420467955	5.37531357137918	5.3689162533849	5.46303672252294	5.70308987753057	5.16108971734133	0.0438817092037162	0.903518278645408	0.977832715016903
Merged-chr5-25314164-3	chr5	25313680	25314680	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081383, exon 36 of 59)	exon (NM_001081383, exon 36 of 59)	67807.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	2.76658456700162	2.65776019588955	2.82812143121232	2.69588859634172	2.54899830840434	2.95839008603147	-0.060856519193714	0.936078198449904	0.986014061025137
Merged-chr17-71476425-2	chr17	71475925	71476925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	5.43705703050509	5.43125909169295	5.67771959765762	5.88406923759799	6.13204353681278	5.71337651214842	0.770979708149071	0.0186001031366841	0.154120432363793
Merged-chr3-5860674-4	chr3	5860182	5861182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-284434.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	5.41591182670418	5.14689696120011	5.70084837247299	5.23506483708939	5.08323543032443	6.11572899496612	0.229294466021323	0.608682980238444	0.885006356798728
Merged-chr10-7598346-3	chr10	7597854	7598854	+	824.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172784, intron 2 of 6)	L3b|LINE|CR1	8554.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	2.76729428810858	2.62977568025071	2.85253367014859	2.5681074898037	2.66393357891506	2.74592742082201	-0.486772246704761	0.515868105404921	1
Merged-chr11-20332132-1	chr11	20331632	20332632	+	689.5	f0_balb.idr	exon (NM_018861, exon 1 of 8)	exon (NM_018861, exon 1 of 8)	581.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	3.81754714514849	3.87988498190489	3.74831493672878	4.06288544921752	3.86239556523404	3.65218933571549	0.175118317136371	0.743683242666292	0.93574031770482
Merged-chr3-137865208-4	chr3	137864704	137865704	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316995, exon 2 of 5)	exon (NM_001316995, exon 2 of 5)	717.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	6.57137056811937	6.24971751087798	6.53826479068819	6.42489371814363	6.49605282148769	7.00065598852389	0.318800021356849	0.296407704951377	0.693122171820648
Merged-chr7-4501772-4	chr7	4501280	4502280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029834)	promoter-TSS (NM_029834)	-100.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	8.55202200785068	8.39649473805434	8.29893764305037	8.61895833774528	8.54410180112696	8.37278952166284	0.132962191647753	0.532910030292541	0.852017097082886
Merged-chr6-120820418-4	chr6	120819918	120820918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	2280.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	6.3129302259902	6.42456485793393	6.41776263369833	6.65371541591633	6.46356017542717	6.28101625412211	0.156531635612942	0.571443211592349	0.869536259548282
Merged-chr11-85235059-4	chr11	85234526	85235526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	94.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	8.30316048039191	8.47957462739425	8.37901283405574	8.1611982831091	8.08107246385007	7.93780507959783	-0.454028916338743	0.0322730171196854	0.218291750537908
Merged-chr7-99044581-3	chr7	99044084	99045084	+	739.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	96560.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.94270012289286	5.98117191061981	5.43891142122462	5.81452091958245	5.76723804518897	6.03528311501939	0.0809288747580954	0.810574562740615	0.955054272231421
Merged-chr11-109418108-1	chr11	109417608	109418608	+	620.0	f1_balb.idr	Intergenic	Intergenic	-7838.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	5.57850057620112	5.57598700023652	4.82341248089561	5.13464380709954	4.9963176055821	4.56677623434887	-0.925006211679804	0.0415104384117594	0.254793582977186
Merged-chr18-68194632-4	chr18	68194135	68195135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-33311.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.74313062049729	6.90516640615846	6.65526768447197	6.5573237908832	6.6625508769527	6.76179669071964	-0.185822097244972	0.473694801971991	0.82103020564679
Merged-chr4-12533114-4	chr4	12532620	12533620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-361105.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.08755948676301	5.08690441496329	4.78638117401554	5.06077575848501	5.10002940680668	4.7274818230854	-0.0412004264941152	0.917320542786794	0.981588017376699
Merged-chr16-11460984-3	chr16	11460494	11461494	+	998.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	55346.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	7.75435756641685	7.89462806398033	7.74543444395429	7.31432747939178	7.61855796937413	7.20078852154566	-0.581355137715567	0.0172594954089134	0.146436090738643
Merged-chr14-70205949-4	chr14	70205449	70206449	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	73.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	6.06548734636806	6.55028645656364	5.93653094763008	4.51574874544797	4.5423525555683	4.8138429612485	-3.26855431150082	4.1594432284609e-16	1.41264878430112e-13
Merged-chr2-61138694-3	chr2	61138209	61139209	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163558.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	4.67292591705397	4.42873741534983	4.06929083193701	3.71696121300794	3.37171217611014	3.76548954759918	-2.56547660636356	1.20475471327912e-05	0.000469532694063366
Merged-chr18-11717954-3	chr18	11717445	11718445	+	895.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 8 of 18)	L2|LINE|L2	60596.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	5.24754301190947	5.68206771119153	5.7160883641069	5.96210749936026	6.05866022133669	6.08175208556406	0.852385763010315	0.00953526369131176	0.0972316447581703
Merged-chr11-120632122-2	chr11	120631622	120632622	+	934.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1425.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	6.77337137296488	6.5066410649245	6.5596262311565	6.75730451446421	6.9670135021333	6.81365621131503	0.363708044476452	0.165850163241008	0.541051532304468
Merged-chr12-33433190-2	chr12	33432690	33433690	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172253, intron 1 of 3)	intron (NM_172253, intron 1 of 3)	3566.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	5.88041606777688	6.14613325867195	5.72202159447874	5.9534278982371	5.98438295466046	6.14327610324095	0.14721613690489	0.636305496231165	0.8970753299382
Merged-chr1-189659400-2	chr1	189658900	189659900	+	590.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	28686.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.53831484812846	4.80869738082506	4.66703378431448	4.71454774687336	4.55747411008067	4.6117498951523	-0.12026497642355	0.771709916096488	0.943614978016208
Merged-chr5-52674921-4	chr5	52674412	52675412	+	948.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-5211.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	2.77785152100275	2.99454700346946	2.75785918721965	3.09983271991679	2.72180858598669	2.95872513468333	0.398023495992714	0.589865054165162	0.877024090368969
Merged-chr6-13871540-4	chr6	13871055	13872055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	-14.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	8.19292826881088	8.45944861572366	7.93189303445488	8.21284205483631	8.69851031989155	8.17459059265204	0.241833592756727	0.364768588860427	0.750028369485675
Merged-chr4-132899328-3	chr4	132898837	132899837	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163792, exon 8 of 8)	3' UTR (NM_001163792, exon 8 of 8)	-14879.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	3.0789301542513	3.14120650110844	3.16979589979911	3.84626269935661	3.60657345097648	3.54137430347268	2.18941467745738	0.000586827439434556	0.0119356483941507
Merged-chr10-72654814-4	chr10	72654328	72655328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293684)	promoter-TSS (NM_001293684)	-18.0	NM_025635	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	6.85418251441503	7.06076120550388	6.99151032375968	6.78815321078751	6.98575532671655	6.36874934237756	-0.334298496507377	0.243301516389622	0.640502592040103
Merged-chr4-53076426-3	chr4	53076010	53077010	+	814.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 20 of 49)	MTD|LTR|ERVL-MaLR	64630.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	3.16091916583692	2.84252537796885	3.05993305813575	3.09531447119443	2.8522795943253	3.13226005239023	0.0015417082610417	0.998234456724408	0.999590080903912
Merged-chr17-6748735-2	chr17	6748235	6749235	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	34045.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	3.20090263668036	3.14350523126972	3.13428860713628	3.12547399453767	3.00331723287912	3.0881279127389	-0.398955591029134	0.53651254544705	0.854051689876951
Merged-chr1-88277634-4	chr1	88277128	88278128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-49.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	8.20625434991736	8.56309457113658	8.4301228249303	8.82530724960137	8.77891649551313	8.60856193138794	0.462783527829449	0.0345065772692447	0.227643894327956
Merged-chr5-123827751-3	chr5	123827252	123828252	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37764.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	2.53900130791258	2.7133926231093	2.47092718302638	2.77540119435075	2.5225097127831	2.74102880021482	0.54829344659593	0.489035573612804	1
Merged-chr5-140208579-2	chr5	140208079	140209079	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-33661.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	4.54905856444742	4.81969022457853	5.04896644174701	4.0924307956144	3.89947408704065	4.35146320247931	-1.82704597996015	0.00016551914511837	0.00429829581797194
Merged-chr13-35647646-4	chr13	35647145	35648145	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12217.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	2.90002768734225	3.14857101246115	3.04853038910832	2.80244553386273	2.65416581391577	2.68716132116601	-1.68126976811749	0.0249777983917299	0.186874424221059
Merged-chr18-38944277-2	chr18	38943777	38944777	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25578.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.81601738846697	3.86568979530361	4.06061153975636	3.36534233549132	3.30762677332313	3.70772813185825	-1.60062987454023	0.00676535500437953	0.0762573366573303
Merged-chr9-113739130-4	chr9	113738614	113739614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2359.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	6.86674859204677	7.03323984407309	6.93211153115713	6.77232393791078	7.07406491939773	6.90540716687963	-0.0278778484379645	0.912472044829369	0.980363124210176
Merged-chr17-45757496-1	chr17	45756996	45757996	+	925.0	f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	22990.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	5.82456627094151	5.89018911783195	5.83153063567409	5.36552531187073	5.24514882701097	5.30382944509451	-1.03224012141071	0.00129196808376233	0.0220065671061814
Merged-chr5-124534808-2	chr5	124534308	124535308	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-3417.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	3.0229593769449	2.91255424055212	2.84613432738107	2.89654461628439	2.95975132417209	3.32038936173167	0.612929337028135	0.386180941991647	0.766979386557564
Merged-chr5-31882476-4	chr5	31881976	31882976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	184426.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.3338689585069	6.21460540744928	6.03609475002816	5.86926801988598	5.92590308380567	6.26515911654857	-0.317809455808614	0.296900441289552	0.693511179566253
Merged-chr12-70148195-1	chr12	70147695	70148695	+	564.0	f0_balb.idr	Intergenic	Intergenic	-5976.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	4.57403692588402	4.87887810031796	4.17613299292298	4.80993953750888	4.85336823229271	4.35417597462038	0.26532246494526	0.593411146658205	0.878461334527753
Merged-chr13-102692056-2	chr13	102691556	102692556	+	866.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1491.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.09904660817339	4.61873668747529	4.87122489105436	5.16710516717326	5.3771373599559	5.18638787924766	0.785317084740329	0.045813337770374	0.270414713002574
Merged-chr8-121829650-4	chr8	121829167	121830167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145605)	promoter-TSS (NM_145605)	-98.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	6.07981647695332	6.31685106883697	6.16103650325022	6.41094240500911	6.24021830161862	5.942067788086	0.0483840126613314	0.872316189281748	0.970261003150518
Merged-chr2-147012867-4	chr2	147012352	147013352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-147.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	8.25392662332871	8.45852776832133	8.1529856984126	8.44528880547057	8.54363037268643	8.35022724499337	0.212649144169892	0.325598763322376	0.718159390122652
Merged-chr3-121290329-2	chr3	121289876	121290876	+	588.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1364.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	2.84062679642363	2.43147032019708	2.64913833281956	2.78066511745109	2.46638975785071	2.90668375234262	0.401688341059677	0.626363620103385	0.892898134342342
Merged-chr2-118902551-6	chr2	118902013	118903013	+	865.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	CpG	898.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	3.31596782268813	2.96606011590274	2.96982409591169	3.16455861091862	2.85477875085599	3.10506055413019	-0.234964738572035	0.738543148621589	0.934037286965188
Merged-chr3-90514411-4	chr3	90513925	90514925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	-10.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	5.03962408858343	5.11381084253677	5.06128859135106	5.40735854283537	5.2041717716681	5.29241296381743	0.467395392648427	0.186576279510882	0.571262844625458
Merged-chr14-118437252-2	chr14	118436752	118437752	+	844.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	71374.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	1.81425816492712	1.94648474103839	2.01102898219011	1.74849415719082	1.65856910935744	1.67342512960423	-2.35419068623668	0.0380702805574794	1
Merged-chr7-122305625-4	chr7	122305112	122306112	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	16487.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.73322322924913	4.45969227419638	4.76996640618936	4.65396713769443	4.50286025601154	4.68393009788132	-0.109473960261258	0.795060926781918	0.950977844444051
Merged-chr16-38225004-3	chr16	38224522	38225522	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 10 of 11)	MTE2a|LTR|ERVL-MaLR	69802.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	3.43483215015369	3.26712799461362	3.23799435884133	3.41805658322692	3.43058961417073	3.58770403053444	0.601146704823565	0.317691129117137	0.711502260156078
Merged-chr7-45589326-4	chr7	45588809	45589809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009737, exon 11 of 11)	exon (NM_009737, exon 11 of 11)	-14133.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	5.26539652603809	4.62666274327256	4.97071651985901	5.02290351766868	5.05110723875518	5.23525524645103	0.250158079114982	0.544015030760081	0.857551302506722
Merged-chr2-18892941-3	chr2	18892432	18893432	+	842.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-91114.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	4.88711169629405	4.79873452473392	4.47697538163109	4.65597798559928	4.60488327746663	4.67439678180823	-0.237251517794083	0.570523779280389	0.869220609141201
Merged-chr3-84040682-4	chr3	84040204	84041204	+	887.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	-543.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	4.16821739233182	4.37618225270755	4.01301475431312	4.0304087829726	3.80609100326311	3.98200000713062	-0.774092939277631	0.123833160025304	0.470971276139752
Merged-chr7-16115699-1	chr7	16115199	16116199	+	1000.0	f1_balb.idr	intron (NM_025898, intron 10 of 10)	intron (NM_025898, intron 10 of 10)	-4177.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	3.4503436838897	3.47920857273463	3.64420769732309	3.73207056391682	3.5461104578274	3.90837984100901	0.719280859104809	0.205215693302992	0.595845110560745
Merged-chr8-109862643-4	chr8	109862107	109863107	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-5996.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	5.41711081654799	5.41784267073087	5.71753005992283	5.39083361040434	5.5584066203749	5.72934342003739	0.0887814695920698	0.793983275121003	0.950531747588938
Merged-chr2-27683043-2	chr2	27682543	27683543	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	5842.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.47216237976391	5.796948213299	6.0869174558317	5.70033507088152	5.61677851430234	5.88890754865436	-0.119350671822961	0.728842361505591	0.930478966998914
Merged-chr19-12024351-4	chr19	12023840	12024840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12400.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.00094074592136	4.92880613321363	4.9428580171874	5.09806366874656	4.98812856103151	5.30288350555939	0.355089052121052	0.340992809722597	0.730649955228746
Merged-chr8-41006927-4	chr8	41006404	41007404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10564.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	6.20062017807305	6.24496669396524	6.00364058798784	6.28202525371361	6.54675041154136	6.17992595889182	0.324881085282201	0.26818581130743	0.665310623989488
Merged-chr3-65538586-3	chr3	65538087	65539087	+	941.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-9173.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.16502068641149	4.30381691986938	3.84629988532254	4.0380566407232	4.47829730379878	3.91947434971738	0.150562954014535	0.782391411737735	0.946513878858294
Merged-chr2-30067256-4	chr2	30066767	30067767	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204875, intron 1 of 7)	CpG	793.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	4.77663576710214	4.78338195798987	5.13960939810129	5.00796553281336	4.49243446932127	5.2908385943972	0.126018366856428	0.779935743978199	0.945949149660645
Merged-chr2-91182345-7	chr2	91181791	91182791	+	895.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177719, intron 1 of 34)	intron (NM_001177719, intron 1 of 34)	756.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	4.97161479725703	5.03353753755939	4.92836035732419	4.74933660196565	4.72994381720397	4.95753463502445	-0.38773440686189	0.312432869258605	0.707159092574958
Merged-chr11-88201400-3	chr11	88200899	88201899	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	-2989.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.31043341798452	3.72301991133985	4.17850896869969	3.43217589505821	3.25275940972025	3.2805081336803	-1.62741656404471	0.0150207911891398	0.132872587080455
Merged-chr16-36624938-2	chr16	36624438	36625438	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	41139.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.29238872150184	3.00559198631557	3.6933512233885	3.30957956966313	3.19400780938545	3.66801091231961	0.168832215224599	0.807392689371102	0.954557080558103
Merged-chr11-117199047-2	chr11	117198547	117199547	+	911.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	-614.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.09737010909823	6.04049385778218	5.74025432585969	6.04830706152123	6.16703337001181	5.2844999584634	-0.122695708320595	0.747517255735937	0.936632541920315
Merged-chr16-78200871-2	chr16	78200371	78201371	+	794.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54583.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.73062806615334	4.66820749807882	4.78856746429161	4.62448949185271	4.87069074814151	4.65839810784141	0.0118467645644998	0.976662289190011	0.994723308989508
Merged-chr19-55719917-3	chr19	55719427	55720427	+	666.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17723.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	2.89048429891498	3.13931322515353	3.10223546092568	3.05273868280529	3.15742712535928	3.11591344468475	0.278712336187033	0.67514056329428	0.912025066410001
Merged-chr15-59456734-4	chr15	59456227	59457227	+	953.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	82529.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	6.6327031955803	6.79590820353249	6.82500033837605	6.5398707576544	6.87471144360603	6.88330041804538	0.0387318621944135	0.884415158929216	0.973503710448868
Merged-chr7-101896314-4	chr7	101895838	101896838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027532)	promoter-TSS (NM_027532)	7.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	7.28305643392664	7.09643787603132	7.33859615332317	7.44533688230698	7.54207603816208	7.40660353989812	0.341180171635583	0.143628925267649	0.505908462670726
Merged-chr14-48458360-1	chr14	48457860	48458860	+	748.0	f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12008.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	6.79013627367329	7.09525021565636	6.93108103575344	7.13884232257045	7.32947578864246	7.18546054520478	0.419088803901558	0.0930629006193294	0.406380363932467
Merged-chr13-112671349-2	chr13	112670849	112671849	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	B3|SINE|B2	10583.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	3.40875910139642	3.65796451901862	3.8368770520012	4.02518513465484	3.97138431886122	4.00290925436581	1.16866772734929	0.0327621222146527	0.22041321678823
Merged-chr9-22230715-4	chr9	22230195	22231195	+	853.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	intron (NR_028420, intron 1 of 4)	4983.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	2.811036236258	2.80006715993533	2.94569965781446	2.98572019935109	2.74770754975536	3.01801616741955	0.329290713122962	0.641595800659552	0.899095902698814
Merged-chr5-150592695-4	chr5	150592166	150593166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1859.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	7.33522745052688	7.28773724615639	7.22659647585262	7.14091680100491	7.50938099432654	7.23632852562663	0.0400409107090307	0.870384025586033	0.970065609722504
Merged-chr9-110531392-2	chr9	110530892	110531892	+	686.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1205.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	5.40059936788796	5.58844861013807	5.52816481360809	6.03791175251	5.96666970143134	5.6495548205384	0.723914224554834	0.0255938035051483	0.189658350170773
Merged-chr4-149446044-2	chr4	149445544	149446544	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8924.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	5.34344239124897	5.54510897880005	5.36412244058617	5.00301039150174	5.19079601270082	5.48478214420669	-0.382435105674886	0.291721754817635	0.689198857889432
Merged-chr5-88634498-2	chr5	88633998	88634998	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 10 of 13)	intron (NM_001359208, intron 10 of 13)	41082.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	2.67553088555844	2.83286681470879	2.61131596775742	2.80340825623122	2.53025615068617	2.81246450215158	0.0257387293031637	0.973304408539974	1
Merged-chr13-56184496-4	chr13	56184022	56185022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5637.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	6.84210684876295	6.58580590002325	6.74603871198194	6.27684109796951	6.57522263697855	6.52781941899234	-0.4130549598956	0.130356223551036	0.482560431744706
Merged-chr10-118870402-4	chr10	118869872	118870872	+	942.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.71231033625429	6.35868969744471	5.96578525907454	6.14601686996077	6.08591858182481	5.69752303789312	-0.656104181087907	0.0569665118599195	0.307716795562203
Merged-chr18-61400020-11	chr18	61399556	61400556	+	998.3485109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133249, intron 1 of 11)	CpG	375.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	6.60168581210471	6.57109809017279	6.74542545458401	6.64051133956562	6.2041519585928	6.34082143931422	-0.371443183239656	0.189568562751598	0.575492422581279
Merged-chr2-129372153-1	chr2	129371653	129372653	+	565.0	f1_c57bl6.idr	intron (NR_015474, intron 1 of 2)	intron (NR_015474, intron 1 of 2)	-1014.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.00230713752573	4.78606436098615	5.03334653615648	4.91935196898169	5.1207140659857	5.2267368799977	0.325711635280492	0.391898709072083	0.770782330002482
Merged-chr11-54966515-2	chr11	54966015	54967015	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3575.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	2.55335137047986	2.66639938405567	2.70767500496962	2.58114610593084	2.44290900656694	2.65829997658677	-0.480762192925198	0.534203447043071	1
Merged-chr12-73606072-4	chr12	73605582	73606582	+	921.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	MTD|LTR|ERVL-MaLR	21286.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.13962569777155	5.17348252272857	4.9238551923827	4.65927693351289	4.71110848820766	4.7167257003189	-0.880098778404274	0.0229764750558405	0.177135785828442
Merged-chr11-62731452-1	chr11	62730952	62731952	+	666.0	f0_c57.idr	Intergenic	Intergenic	-2359.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	4.59177613665358	4.99084650326358	4.83651846816674	5.21520591072375	5.2768671641226	5.05136671104578	0.79643687640775	0.0415886034992188	0.255041194181252
Merged-chr4-117254124-4	chr4	117253627	117254627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1787.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	5.36760594424898	5.02104373675624	5.24858655119729	4.78173839749417	5.19917172463408	5.04763963294707	-0.397196797599653	0.307914349951574	0.703947279446131
Merged-chr13-55600828-4	chr13	55600328	55601328	+	878.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146045, intron 1 of 5)	intron (NM_146045, intron 1 of 5)	932.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	5.35480972847921	5.55411535417907	5.66952589312844	5.73769895046079	5.88171687336294	5.34721860441777	0.302681060637913	0.387414450692544	0.767643922877325
Merged-chr5-135780628-4	chr5	135780146	135781146	+	751.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1997.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	3.38663129326592	2.9582617819808	3.41521454175496	3.24364209308773	3.42416446148128	3.53772729676963	0.537361358396667	0.418589509274517	0.788726823651631
Merged-chr1-120056551-2	chr1	120056051	120057051	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 12 of 13)	intron (NM_001012322, intron 12 of 13)	17229.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.97111314036304	4.47455768345371	4.81573079499167	5.30677728153317	5.02785944242145	4.76202574479074	0.627575297323933	0.144509626283474	0.507228422500435
Merged-chr11-86818889-2	chr11	86818389	86819389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-11229.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	5.61003268796447	5.78135147257966	6.0989613232617	5.82133467266855	5.94320198249806	6.49851113733678	0.47918890017958	0.176817764963166	0.557424133782494
Merged-chr6-51636372-4	chr6	51635872	51636872	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91079.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.66855446972902	4.43051919355382	4.41080351681958	4.67401803804461	4.96263667472898	4.3364460790295	0.44154692998988	0.33782313386505	0.72769978571614
Merged-chr13-91094384-2	chr13	91093884	91094884	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	129603.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	3.72580218242971	3.6320157064389	3.60128963695253	3.33581702397276	3.33099056625252	3.39828981937751	-1.15596815923907	0.0472125837475965	0.275222167327609
Merged-chr5-135613888-2	chr5	135613386	135614386	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-18768.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.96836489801777	4.75740076055287	4.61207724415024	3.8742974280095	4.0244467948575	4.03061766402669	-2.19264922827257	5.62859965415605e-06	0.000244366225441471
Merged-chr2-62630653-4	chr2	62630144	62631144	+	887.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 2 of 14)	intron (NM_001164477, intron 2 of 14)	15611.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	2.10960297068106	2.0880247292572	2.5817364009336	2.33711854324655	2.26250048147351	2.47416007982845	0.522653629838641	0.571440472230247	1
Merged-chr19-55644327-2	chr19	55643827	55644827	+	594.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	57877.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.43139805506345	7.08398722562029	6.97104254543621	7.25323413171238	7.47615428132234	7.13811121145811	0.177764249223366	0.505706654327722	0.838177729332582
Merged-chr4-141716586-2	chr4	141716086	141717086	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	6833.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	3.30741671367548	3.350577874157	3.64547556849132	3.53799888434283	3.90604432855166	3.61114990727995	0.953653037892684	0.110221580478364	0.44355436116098
Merged-chr10-121995572-4	chr10	121995092	121996092	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	51723.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.17730388362408	3.11442520545724	3.28673487288196	2.73281476304199	2.84340262818558	2.69769657058649	-2.14969996423672	0.00531338981270884	0.0638063120342929
Merged-chr8-76902176-4	chr8	76901661	76902661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083906)	promoter-TSS (NM_001083906)	-347.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	7.29887380934277	7.3689640482896	7.17126912836385	6.77977825271481	6.75586920628501	7.02697336647731	-0.660872091528723	0.00741403387018792	0.0814972459319953
Merged-chr2-174471952-2	chr2	174471452	174472452	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	989.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	5.69508932713761	5.75662774452012	5.95071580043045	6.05318057386519	6.1670726104683	6.20425462466601	0.603676596315779	0.0417392967721248	0.255502347223936
Merged-chr16-11462982-2	chr16	11462482	11463482	+	664.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	57334.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	4.33061657899746	4.37825611936646	4.35663889885791	4.40667135815493	4.45263316625956	4.24071731976613	0.0576309963400474	0.896594245854756	0.975838835430135
Merged-chr9-60688077-4	chr9	60687576	60688576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145616)	promoter-TSS (NM_145616)	58.0	NM_001146046	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	4.73796112455609	4.65808761114224	5.03288987705889	4.51180911036836	4.61780202867721	4.86258047312811	-0.33627449032628	0.424518829334559	0.792697196836987
Merged-chr16-33191814-3	chr16	33191287	33192287	+	875.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	LTR40a|LTR|ERVL	6716.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	6.21339852442519	6.38869575635601	6.44332503695379	6.24527068708645	6.21600410373006	6.15008301496124	-0.234317896502767	0.39861649471552	0.775273667788888
Merged-chr7-88290746-2	chr7	88290239	88291239	+	588.5	f0_c57.idr|f1_c57bl6.idr	3' UTR (NM_001311790, exon 4 of 4)	3' UTR (NM_001311790, exon 4 of 4)	12654.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.71740075775367	4.54856789282597	4.63705071722352	4.71070013186737	4.56899933601886	5.21093027966555	0.485117629302184	0.271120256779465	0.668361183862025
Merged-chr8-117399330-2	chr8	117398830	117399830	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	50160.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	2.47045951074135	2.42531304479108	2.4819447556788	2.26491579538512	2.17348876905272	2.22819434222613	-1.68728313437749	0.0550828691934423	1
Merged-chr8-61487873-4	chr8	61487372	61488372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145595, exon 1 of 5)	exon (NM_145595, exon 1 of 5)	138.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	8.07426660828603	8.7092676003701	8.17833006355322	8.25407882296968	8.4215648192919	8.01068801079976	-0.158382520890403	0.555993354639379	0.863536324575977
Merged-chr5-142462181-2	chr5	142461681	142462681	+	586.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199068)	TTS (NM_199068)	-1750.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	2.894163962161	2.81823946218227	3.25438955807078	2.98802764836156	2.960327891168	3.04968478141139	0.0146007619645979	0.983375956523783	0.996283289789735
Merged-chr19-47137934-3	chr19	47137429	47138429	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133746, exon 1 of 3)	5' UTR (NM_133746, exon 1 of 3)	365.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	7.42358677866563	7.61561063834224	7.49125936254472	7.55587885324958	7.79434773964085	7.63547204261255	0.226141325591591	0.323807749327271	0.717070860604774
Merged-chr8-116504938-4	chr8	116504448	116505448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029297)	promoter-TSS (NM_029297)	-67.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.6784407105435	2.5371902010094	2.64403934854595	2.63921347925358	2.58358057560121	2.95470654843905	0.590532244124633	0.442708105063909	0.803309923833629
Merged-chr19-10739004-4	chr19	10738500	10739500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007650)	promoter-TSS (NM_007650)	-26.0	NM_007650	12507.0	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	2.86206487405616	2.72437685495394	2.96064514011717	2.40306275648709	2.46854215985523	2.40931211853194	-2.65278991023447	0.00314155615628831	1
Merged-chr9-62342047-2	chr9	62341547	62342547	+	928.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	704.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	6.1782604792732	6.0766656928875	6.71749322160811	6.46202133524363	6.2900275698186	6.52731468081012	0.1352487062947	0.668025541577792	0.908976375106763
Merged-chr8-119437632-2	chr8	119437132	119438132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	470.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	7.89548788389355	8.04742002144498	7.54985618529099	7.99946858397635	8.16711335025632	7.83148483073835	0.222186566624343	0.37184103022595	0.755841610252976
Merged-chr8-108719880-2	chr8	108719380	108720380	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	5236.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.58549717689425	2.81653784725313	2.89539050640881	2.50020448110176	2.59589135144243	2.73183897784737	-0.875093230979409	0.260387130923281	0.657803047902843
Merged-chr3-97629445-2	chr3	97628945	97629945	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010232, intron 2 of 8)	(A)n|Simple_repeat|Simple_repeat	426.0	NM_001355119	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	3.77304359629502	4.00331430303904	4.23057755037944	3.79883720912929	3.84776801413346	3.93980866651816	-0.44809183900832	0.393129618811027	0.771490835516741
Merged-chr11-103443962-4	chr11	103443462	103444462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-31298.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.41865238388297	6.67566792648085	6.29058227640473	6.41607753646704	6.74046401252605	6.41097988091846	0.098312138245828	0.735148011785022	0.932617455907478
Merged-chr7-118653224-2	chr7	118652724	118653724	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 8 of 17)	intron (NM_028930, intron 8 of 17)	19488.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	3.10294441437164	3.05311897033421	2.96894248174647	3.26044816291057	3.22432898222484	3.22423556111863	0.824806250767309	0.202108355706255	0.591773948258361
Merged-chr3-52103859-4	chr3	52103351	52104351	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001004176, exon 1 of 5)	exon (NM_001004176, exon 1 of 5)	1155.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.93165093213433	5.96209893477984	5.89127757288609	6.09513866480772	5.93783681197735	5.8529206076717	0.0667121582142786	0.821755576691035	0.958023303204974
Merged-chr18-38415831-6	chr18	38415354	38416354	+	991.257935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	6.3988226957125	6.3920144503307	6.01846941719107	5.52503436749239	6.11782432752254	5.96119254165778	-0.665048821415061	0.0474546018874398	0.275948642760712
Merged-chr18-54902020-1	chr18	54901520	54902520	+	574.333313	f0_balb.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	88160.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.24512680131381	6.45092544962543	6.43379063491183	6.63443671057236	6.89175028377874	6.6666478646443	0.583801258727467	0.0304774894030294	0.211049512171044
Merged-chr19-40710036-1	chr19	40709536	40710536	+	565.0	f1_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	50266.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.5626032682777	3.54873559853362	3.8012548596589	3.62493303773131	3.47003560964103	3.4531906485176	-0.415083089338269	0.467666405866828	0.818113871530895
Merged-chr7-126585716-4	chr7	126585217	126586217	+	829.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146311)	promoter-TSS (NM_001146311)	100.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	6.47261483075456	6.37964822932523	6.56681456180991	6.39737185185325	6.24741844782083	6.41645985920151	-0.196137446278654	0.46818688972904	0.818392725892343
Merged-chr1-184444356-4	chr1	184443824	184444824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113367.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.28964865736835	4.27734958568502	4.10467091146601	4.1808605201163	4.08519629706146	4.22069991354427	-0.206679030107847	0.657999462795517	0.904920006599558
Merged-chr16-35872207-3	chr16	35871703	35872703	+	874.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-821.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	6.42240665936251	6.92221697588837	6.58512664788119	6.78332514425313	6.92009434348487	6.86564021009864	0.299460482634237	0.282791557124533	0.6807006950826
Merged-chr12-91752241-2	chr12	91751741	91752741	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	34195.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.27113033923021	4.14671177725798	4.39303818519426	4.17100812119314	4.14053192951993	4.24479521350938	-0.233910777712328	0.613358923250223	0.887185353929309
Merged-chr12-8519136-1	chr12	8518636	8519636	+	676.0	f0_balb.idr	Intergenic	Intergenic	-19127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.59290890445407	8.05776757689481	7.80541679180822	7.64187595882092	7.96064204710842	7.44271988338325	-0.18139412917164	0.495465252030751	0.832500902975543
Merged-chr19-23250180-2	chr19	23249680	23250680	+	611.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252684, intron 8 of 24)	L1MD|LINE|L1	22419.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	3.48799072590036	3.7826184232069	3.66232026158437	3.69183660931079	3.92111603524866	3.78512982458617	0.513912209375162	0.351954242773792	0.739586550312439
Merged-chr12-73123794-4	chr12	73123294	73124294	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008612)	promoter-TSS (NM_008612)	77.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	4.11551248255541	4.01292533350147	4.41159151027604	4.20035164582188	3.69257612624927	4.04464763946857	-0.55291002568521	0.298401147579971	0.695092204767927
Merged-chr5-64288398-2	chr5	64287898	64288898	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	58041.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.56388138638706	4.06175245777377	4.11297043275817	3.45882722540995	3.37611509750542	3.96171410354186	-1.02161159864163	0.102015087315529	0.425957014519798
Merged-chr11-3171468-2	chr11	3170965	3171965	+	953.333374	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B1_Mur1|SINE|Alu	21998.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.1248530012501	6.67883131187903	6.48906641882482	4.50756247456416	4.18940942185592	7.19982065927252	-0.484125710652794	0.781100225295055	0.946145838976425
Merged-chr16-49792688-4	chr16	49792211	49793211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62943.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.347480272933	5.315338333438	5.18784026630384	5.2677881953761	4.8934587688436	5.00645254100774	-0.467750131721436	0.204904225054856	0.595580073300188
Merged-chr9-64744503-2	chr9	64744003	64745003	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6747.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.9876810807821	4.43108972170471	4.50131023044593	4.48347048207291	4.4431661368578	4.65187372188966	-0.357828402958634	0.431884974745323	0.797114750192572
Merged-chr4-117210912-2	chr4	117210412	117211412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	U5|snRNA|snRNA	-28288.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.393156689373	7.30655356359024	6.82744512867985	6.83427002608803	7.14935538642562	6.53347692249497	-0.0493736857641728	0.886478434932719	0.973794308941933
Merged-chr11-69124644-4	chr11	69124169	69125169	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-1708.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	5.28314327625747	5.39674271633222	5.38002266005661	5.37576923850567	5.66750248598905	5.6930882996737	0.447068436378593	0.185040765019219	0.569091204638575
Merged-chr16-30416549-4	chr16	30416052	30417052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28022.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	7.2736637039401	7.30665851808424	7.10702954089697	7.54069770289029	7.6973220752663	7.09770879309788	0.361174570447877	0.1742362335912	0.553403610743454
Merged-chr11-109365053-4	chr11	109364567	109365567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1413.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	7.76103392457946	8.0426816324632	7.31558263140334	8.08102109885624	8.2007443072397	7.54451607357005	0.328092206976578	0.273910835257838	0.671314237996942
Merged-chr19-29361881-4	chr19	29361382	29362382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-11.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	6.94341632566005	7.18801970176552	6.79844718721566	7.1641961587229	7.14383996392649	6.77697905850572	0.0822421774126565	0.761197346104032	0.941152913528252
Merged-chr16-14311594-2	chr16	14311094	14312094	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025345, intron 2 of 4)	B2_Mm2|SINE|B2	5738.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	2.22477087728796	2.64372109704594	2.18482165197798	2.44463393460635	2.26788462900821	2.53152352181691	0.288957240349744	0.756290639953304	1
Merged-chr14-20082343-2	chr14	20081843	20082843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	RMER10B|LTR|ERVL	829.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	7.62024882588853	7.95581323373805	7.53717176448584	7.54443676584784	7.6646681969484	7.66107890685929	-0.144398718233814	0.548553911905339	0.859822368814807
Merged-chr19-5731774-4	chr19	5731259	5732259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020491)	promoter-TSS (NM_020491)	-27.0	NM_020491	56390.0	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren syndrome/scleroderma autoantigen 1	protein-coding	5.40420406289627	5.21227090311915	5.56915963962431	5.25643556096621	5.52046752241184	5.40592189315622	0.0189763863291932	0.956809438628888	0.989887454023164
Merged-chr19-12501636-4	chr19	12501116	12502116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172442, exon 1 of 9)	5' UTR (NM_172442, exon 1 of 9)	380.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	7.15582923741043	6.9301217981628	6.83622230476279	6.4670623592514	5.90500388235106	6.10609387666448	-1.28957587786526	1.74045707558968e-05	0.000647384677450452
Merged-chr14-13981472-4	chr14	13980962	13981962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19610.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	4.39095776944609	4.12114936712279	4.28854888193341	4.35626797490228	4.19827896922602	4.59858442708267	0.302989909234274	0.518644991162295	0.845422019837641
Merged-chr11-90227306-2	chr11	90226806	90227806	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22170.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.53039968227194	6.55785803340586	6.46754736241814	6.30135448259706	6.36540773314133	6.27757345884004	-0.331596170317221	0.210662568713241	0.602903316278853
Merged-chr17-74442153-6	chr17	74441662	74442662	+	992.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 4 of 8)	MTA_Mm|LTR|ERVL-MaLR	16946.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.86587194366784	4.57173378652797	4.71893762308714	4.82371400986924	4.55386873894228	4.49209510251742	-0.21426082492408	0.61326209717262	0.887155767338434
Merged-chr19-11540352-4	chr19	11539856	11540856	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025658, intron 1 of 6)	intron (NM_025658, intron 1 of 6)	3507.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	6.12154881096158	6.41142918187403	5.95402422852189	6.07531456241927	6.78281570336758	6.46130864499303	0.485143366516949	0.147395351230416	0.51229087349212
Merged-chr14-45678363-1	chr14	45677863	45678863	+	564.0	f1_balb.idr	Intergenic	Intergenic	-20220.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	2.40582800753383	2.43691559214508	2.58940656873961	2.51256181187105	2.36274047654723	2.47452632504602	-0.165251801618417	0.836458808015301	1
Merged-chr8-73886141-3	chr8	73885646	73886646	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-532606.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	2.83475911061003	3.16416891193242	3.1396725969015	2.88194729873656	2.61846412482994	2.85912816469854	-1.32698191414912	0.0766526883362461	0.364755288612704
Merged-chr19-5806120-4	chr19	5805624	5806624	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3452.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.76291988404925	7.40490834555807	7.37462863629764	7.32899586140709	7.66381035693446	7.20751989750087	-0.155900516623656	0.558424215219825	0.864672466604129
Merged-chr1-151819411-4	chr1	151818885	151819885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	64011.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	7.043480248765	7.16695054193355	7.02770235466718	7.20784727187107	7.24940565261163	7.22415824732819	0.216276220825072	0.354388067951274	0.741552937201367
Merged-chr3-69208831-4	chr3	69208318	69209318	+	920.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.68136986183204	3.564455964321	3.93037551303335	3.74838708271411	3.82418852969376	3.75469560228994	0.176295545961252	0.745485385802502	0.936177103310491
Merged-chr4-133968074-4	chr4	133967583	133968583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-92.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	7.83471821941529	8.00475781099201	7.82385441152145	7.61163783134503	7.66046828790978	7.76317294857845	-0.310483164529272	0.156747470124545	0.527613063058663
Merged-chr3-90511230-1	chr3	90510730	90511730	+	639.0	f1_balb.idr	exon (NM_011309, exon 3 of 3)	exon (NM_011309, exon 3 of 3)	-1732.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	2.94429617641388	2.6638325465908	2.82369554272649	3.03272393788537	2.62199161527123	3.24310591834221	0.813211291239261	0.296519071214405	0.693171366955017
Merged-chr3-127077587-2	chr3	127077082	127078082	+	744.333374	f0_c57.idr|f1_c57bl6.idr	exon (NM_001327939, exon 5 of 46)	exon (NM_001327939, exon 5 of 46)	-79130.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.37763591196657	2.20177155950703	2.33055903542375	2.40127827127141	2.41017026479145	2.59551732391727	1.05592063568808	0.208878552565332	1
Merged-chr2-92250680-3	chr2	92250190	92251190	+	749.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	29128.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	3.60606793835697	3.53450913814692	3.35694087883822	3.11395523268904	3.38849496240224	3.37158577123915	-0.801750334585663	0.199382678070326	0.587805905501548
Merged-chr1-93635818-4	chr1	93635317	93636317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-90.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	6.6141351524868	6.99927186885584	6.48788181629745	6.73197405202294	6.61295317615023	6.67018845424314	-0.0929495186692282	0.741298430609511	0.934802565252866
Merged-chr19-47918696-4	chr19	47918189	47919189	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	610.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	7.60316831153787	7.63678287139557	7.56876272304594	6.91267061186648	6.99876610912702	6.80410765959155	-1.02808553171758	1.12856911433177e-05	0.000443999900072424
Merged-chr7-19024860-4	chr7	19024335	19025335	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	458.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	6.65094944769424	6.52446953075597	6.56097947625523	6.48621847646644	6.01848944150885	6.3882868737359	-0.449118329913209	0.120784134963479	0.464856905737333
Merged-chr8-13493604-3	chr8	13493045	13494045	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019521, intron 2 of 14)	intron (NM_019521, intron 2 of 14)	990.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	2.72688361262504	2.46584269632757	2.82558186010466	2.43075249183374	2.39198767029127	2.40041464826205	-1.65922717187903	0.0487797058051113	1
Merged-chr8-71538276-2	chr8	71537763	71538763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-826.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	7.84028332054538	8.22574270169536	7.47767212304235	7.98981340216368	8.43097014520014	7.77423276114247	0.296746780998906	0.322823866381082	0.71622978868066
Merged-chr6-72737773-2	chr6	72737273	72738273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	51272.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	5.29271254785412	5.34217062773282	5.55173354939919	6.31931149960075	6.70424434750894	6.03711850640534	1.77814984268453	1.16751948897747e-07	8.22582232335627e-06
Merged-chr12-40431251-3	chr12	40430748	40431748	+	920.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	14542.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	7.24562574707205	7.29145383271283	6.83275922622654	7.47712183354766	7.72113189514369	7.01408150997747	0.444229082079991	0.132620253085402	0.487371522777588
Merged-chr15-97943716-2	chr15	97943216	97944216	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20513.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	3.43991817323885	3.43557419550271	3.66571058110624	3.47132549648357	3.43246426135489	3.68493326687961	0.0585617440884463	0.919595270094185	0.982040931170308
Merged-chr10-24173849-3	chr10	24173357	24174357	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24540.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	4.16243722785059	4.35262176261038	4.35380594326713	4.13834383498237	3.98900142735406	4.37857922875621	-0.340765942073247	0.476120023126674	0.82233881775831
Merged-chr12-85284425-4	chr12	85283927	85284927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3992.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	5.27801221469189	5.34105727871551	5.21134284467235	5.29934396845956	5.15624045212638	5.33879439075454	-0.0443090021118089	0.898295331775935	0.976312272366525
Merged-chr7-99828368-4	chr7	99827878	99828878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016720)	promoter-TSS (NM_016720)	39.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	3.83401475985185	4.16168075977033	4.07133608127035	4.32008364203353	4.32965045034285	4.60669744046444	1.06475076061072	0.0288495704465676	0.203796167562441
Merged-chr13-52634225-2	chr13	52633725	52634725	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 9 of 13)	B4|SINE|B4	37343.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.14805577394483	3.3940292389614	3.38451976090439	3.07747307584567	3.22342805177961	3.50648207639837	-0.14784591201898	0.819108161448373	0.957209935971094
Merged-chr1-80668747-2	chr1	80668247	80669247	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	Lx8b|LINE|L1	-3395.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	2.48502489353067	2.4912878753224	2.81704717166743	2.76381578172519	2.62767827829122	2.77100400868598	0.662839641720095	0.394016852621664	0.772046311610617
Merged-chr16-87353549-2	chr16	87353049	87354049	+	942.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159331)	promoter-TSS (NM_001159331)	-636.0	NM_001159331	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	4.0028896708674	3.92465212231301	3.94951753858352	3.85549022255149	3.72988591288261	3.96998126342687	-0.350768475269594	0.49110125789723	0.830387418199578
Merged-chr6-114838111-4	chr6	114837621	114838621	+	952.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	MTD|LTR|ERVL-MaLR	83700.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.25046441282648	5.21246949722367	5.24592938506152	5.7213296108061	5.53827535651066	5.40651484861935	0.643695513298912	0.0574252932210962	0.309238287485714
Merged-chr4-101160482-2	chr4	101159982	101160982	+	869.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 16 of 24)	intron (NM_146145, intron 16 of 24)	91444.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.31845978395729	3.17628187478416	3.44554581382735	3.33589524640889	2.88203114110896	3.24333232318061	-0.618814212772665	0.363074733813833	0.748626117770869
Merged-chr13-92637015-4	chr13	92636536	92637536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	25898.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	4.79164488968273	5.10822396587817	5.31074391395158	5.14680624050798	5.17289454853771	4.56030544181548	-0.171145678692674	0.695515211985567	0.919289041383579
Merged-chr17-26640441-4	chr17	26639960	26640960	+	825.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35936.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.47305071601544	4.62456941975879	4.54010667780354	3.97882632102743	3.77652457655563	4.22562948915285	-1.55473153365146	0.00145459258962059	0.0241680791128495
Merged-chr3-133525659-5	chr3	133525115	133526115	+	964.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mus1|SINE|Alu	18775.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.65980360275879	4.3885429557604	4.57553208512106	4.34471128723976	4.67990050793701	4.38480396903037	-0.135550543484543	0.761795018717165	0.941318402670338
Merged-chr9-45911137-3	chr9	45910668	45911668	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281934, exon 5 of 17)	exon (NM_001281934, exon 5 of 17)	-4257.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	4.71352782708117	4.5997373176073	5.0264538120917	4.47252864106081	4.61127399487594	4.92679331231789	-0.248503560863036	0.566956728818417	0.867700458659165
Merged-chr1-157047691-4	chr1	157047233	157048233	+	930.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60917.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.42272998789725	6.17560423647585	6.46220049803145	6.16765509231218	6.23657233225573	6.21809161051193	-0.241818658722069	0.390132264191371	0.769518914518539
Merged-chr4-33245099-4	chr4	33244618	33245618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033225)	TTS (NM_001033225)	3669.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	6.77058830167862	6.12113138933676	6.32172659226396	6.54912381258	6.79635010384635	6.55135504651675	0.323649166782387	0.299258167015689	0.695996689522358
Merged-chr6-29853313-2	chr6	29852813	29853813	+	814.349976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347084)	promoter-TSS (NM_001347084)	-428.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	2.92809708724754	2.91580240987862	3.07259861664055	3.06625450674553	2.94277959865556	3.30896460735995	0.622796064530222	0.359913401912233	0.746219593510366
Merged-chr10-40244721-4	chr10	40244221	40245221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023323, intron 1 of 9)	intron (NM_023323, intron 1 of 9)	2258.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	5.60370598653645	5.6769655304637	5.67104793167198	5.84243810134821	5.88812496330569	5.83643544147057	0.376650900696236	0.215015587596396	0.608289712114813
Merged-chr15-99456576-4	chr15	99456084	99457084	+	877.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	1164.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	5.02571400066731	4.90577114106311	5.2565912055772	4.81614101352954	4.73650708855083	5.07135828225082	-0.414616936564443	0.292312070470505	0.689527063542513
Merged-chr4-145240340-4	chr4	145239829	145240829	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.75901790986977	7.46837265219505	7.79318296838946	7.70434944953199	7.84088018396694	7.85770193769738	0.179681187753142	0.437142708612325	0.79976715856888
Merged-chr17-28952466-4	chr17	28951952	28952952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	16.0	NM_001356299	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	8.33124826686083	8.28282053224131	7.94807055123762	8.34435400668357	8.13002098719521	7.58403148197102	-0.192494989953843	0.487868812977101	0.828740765241895
Merged-chr17-26973711-2	chr17	26973211	26974211	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005916, exon 2 of 2)	exon (NM_001005916, exon 2 of 2)	532.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	5.87408809467836	5.94944188929101	6.13730943835913	6.10009605120501	5.81847993182101	5.85805869287949	-0.0925544552153484	0.762314224855713	0.941552504399722
Merged-chr5-102005682-2	chr5	102005182	102006182	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	64239.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.56898005777626	3.50126488908066	3.3586628245168	3.51360357098028	3.20134724822303	3.69830980404411	-0.0112780706038027	0.9854865011858	0.996904015210561
Merged-chr19-11469452-4	chr19	11468947	11469947	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028595)	promoter-TSS (NM_028595)	79.0	NM_028595	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	5.84623950457209	5.86735359766353	5.90028263213813	5.84527496489893	5.98892059283689	5.73331449981601	0.000817345371057258	0.997845987727243	0.999572789544564
Merged-chr3-8747351-4	chr3	8746857	8747857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-80319.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	7.31581550879412	7.52015299501497	7.11173681918367	7.3267219621721	7.41045438261244	6.76549539975059	-0.182251655384664	0.526869795094038	0.849688933709978
Merged-chr9-118612889-2	chr9	118612389	118613389	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	B4|SINE|B4	6180.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.93297971478937	7.17698640214488	7.13735590062327	6.94545714175296	7.11320133382205	6.72742955436363	-0.207445220326928	0.425697573992969	0.793295642579269
Merged-chr11-5522589-2	chr11	5522089	5523089	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 2 of 4)	L1_Rod|LINE|L1	1948.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.35570199081569	5.25381114232828	5.09621327369235	5.37144877106406	4.84317346589229	5.19530297833933	-0.198537007186856	0.606601595532689	0.884238561386847
Merged-chr17-87602376-4	chr17	87601849	87602849	+	962.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33630.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.44716339351774	4.56293835993468	4.75092789725227	5.1044667281774	4.81193252706707	4.65723065929459	0.674585489143114	0.109379183402966	0.441935665368261
Merged-chr10-61453579-2	chr10	61453079	61454079	+	800.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-910.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	3.12972862958017	3.10046767431483	3.0877672919127	3.15995172629526	2.96137915525896	2.9135293378115	-0.403352425147907	0.547126717559996	0.859227689769216
Merged-chr3-152555287-4	chr3	152554788	152555788	+	974.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-111625.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	4.21896614951315	3.6345648049193	4.03875861798464	3.98711396551959	3.88469873771465	3.63586863563206	-0.423925991667576	0.45739357760881	0.812253981549101
Merged-chr5-134458871-4	chr5	134458378	134459378	+	964.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2162.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	5.85516638088181	5.82268893361999	6.08781183067664	6.17971197908453	5.85066818406463	5.82229826056409	0.0779795093588648	0.80367991895735	0.95351077179348
Merged-chr18-80255214-4	chr18	80254712	80255712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164420)	promoter-TSS (NM_001164420)	-33.0	NM_001164420	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	5.72933361730458	5.66049565466315	5.86378544679732	5.52231955284612	5.58805280999549	5.78093807322992	-0.220346025354066	0.488514697829081	0.829270069097705
Merged-chr15-83131586-2	chr15	83131086	83132086	+	796.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178627, exon 7 of 9)	exon (NM_178627, exon 7 of 9)	-8785.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	4.02069969123494	3.70547653333746	4.14787493728473	4.09987599614451	4.12636730356166	4.61182092358306	0.924410675931489	0.0807341421628602	0.375953974313704
Merged-chr2-172346210-4	chr2	172345705	172346705	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	628.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	4.99685278668252	5.17525340339443	5.15718082667665	4.96275490894853	4.94427404703165	4.78788476887311	-0.437348735679046	0.243946917096653	0.641094532176687
Merged-chr9-90107141-4	chr9	90106638	90107638	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	7682.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.77086653852676	5.9236670252276	5.8422037554022	6.01938100833366	6.14120926500836	5.66110737021073	0.216136485340462	0.496536619124389	0.833068443851617
Merged-chr18-62045135-4	chr18	62044587	62045587	+	788.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	92012.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	6.38601259645546	6.27659276175045	6.3300350695811	6.32940357330574	6.88491709113358	6.73468349203585	0.55383281402426	0.0578431744114597	0.310832598565473
Merged-chr11-68706678-4	chr11	68706186	68707186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	14771.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	7.18530403998936	7.66145481024835	7.46407139375264	7.14245073120664	7.36275955470828	6.81140563196126	-0.469393417898028	0.0959133690950563	0.412911817863278
Merged-chr12-25098915-4	chr12	25098422	25099422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2830.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	8.92833955451515	8.94318693184968	8.57644006820908	9.02678096932405	9.09874619995214	8.60471426482635	0.139994764757934	0.561819917703871	0.865580593452079
Merged-chr2-27694347-2	chr2	27693847	27694847	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-14945.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.67169422233138	5.90106837083846	6.36858491271509	5.89675996212061	5.86220818827037	5.977015688433	-0.159123681326147	0.63776433033024	0.8973803061326
Merged-chr5-114660689-1	chr5	114660189	114661189	+	581.0	f1_c57bl6.idr	Intergenic	Intergenic	-2268.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	6.66028888026233	6.72296858911413	6.84336273702568	6.34299780332617	6.62187564351411	6.55928489285077	-0.354946819961929	0.181946712647904	0.564608863504393
Merged-chr9-13299386-4	chr9	13298883	13299883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52427.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	6.8115758976427	6.82571753376603	7.0146556715419	6.65302170780822	6.62634551744637	6.68649033215501	-0.356102768550019	0.157592799726311	0.529063009716043
Merged-chr18-11657364-4	chr18	11656861	11657861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045526)	promoter-TSS (NR_045526)	12.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	7.5781161137914	8.160808156772	7.79570908187634	7.85966219199925	7.88666528102453	8.2792029792319	0.209646801682472	0.43613927580215	0.799461119181469
Merged-chr14-14294673-4	chr14	14294173	14295173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33440.0	NM_147027	18330.0	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding	5.15723213202307	4.79364664145201	4.80717193923756	4.77454773493294	4.69833745297511	4.28943021379587	-0.730155981025653	0.100659308611262	0.423205484863112
Merged-chr10-61696391-2	chr10	61695891	61696891	+	719.666687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	805.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	4.68025037959967	4.46912358344107	4.44339995167487	4.38972262774234	4.20230541332592	4.37938822014229	-0.563010740859764	0.203938175591895	0.594183539852599
Merged-chr10-81168552-2	chr10	81168052	81169052	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-832.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	5.87613191742186	5.94281527330646	6.44739264714056	6.21906581478804	6.32488440515755	6.64973957163216	0.504832209883655	0.120393608706432	0.463997748644966
Merged-chr12-84201435-4	chr12	84200921	84201921	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-7406.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	2.64862183505602	2.57779352602575	2.77018089440562	2.73256439934975	2.74032529480075	2.59153514248703	0.160787509197079	0.830615391219936	1
Merged-chr4-126019193-4	chr4	126018700	126019700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5459.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	7.09026219162434	7.12431295918236	6.99732827232876	7.17371355171217	7.31618348132424	7.39026367283474	0.328245942258517	0.165534335876866	0.540657129048606
Merged-chr10-117816853-2	chr10	117816353	117817353	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 7 of 7)	intron (NM_024457, intron 7 of 7)	-24148.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	3.01272530644998	2.87209837062859	3.04962046224135	2.85430198337604	2.73038507022891	3.1211129709109	-0.351577040055384	0.62214038763217	0.89096859616016
Merged-chr4-141641810-1	chr4	141641310	141642310	+	576.0	f0_balb.idr	intron (NM_001347237, intron 4 of 18)	intron (NM_001347237, intron 4 of 18)	-17976.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	4.85963671308831	4.86005355335038	5.1009704137889	5.82133632442046	5.81126299051215	5.51881689230313	1.58790762169323	6.12374777535858e-06	0.000263422375134699
Merged-chr12-51966737-6	chr12	51966284	51967284	+	849.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	4537.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	6.16400917903934	6.50838308110105	6.21399782988539	6.58029992300261	6.60396206383056	6.39637056897369	0.364976231019964	0.19841354924662	0.586736605505465
Merged-chr1-37903298-4	chr1	37902780	37903780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12803.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	4.74200109535129	4.75590474791863	5.19216111871072	4.86231882023194	5.02691796388167	5.16321746821131	0.25997731013702	0.518676578004741	0.84542522050122
Merged-chr11-55148191-2	chr11	55147691	55148691	+	699.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	3515.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	5.10430767129257	5.04132031148441	5.59897960404403	4.95148413700458	4.92443965667194	5.12654038225362	-0.54451069905126	0.167606846925641	0.543606724575668
Merged-chr8-23208905-2	chr8	23208418	23209418	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	-465.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	5.37362714072933	5.59943102517431	5.83957917494296	5.35315549919491	5.40191070061038	5.46436034225612	-0.386623510671554	0.261203109844239	0.658791438996073
Merged-chr13-98813340-2	chr13	98812840	98813840	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	ID_B1|SINE|B4	2109.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.43451812526171	5.40833936008321	5.37613616465792	5.53501031122528	5.76528984623871	5.5873793633996	0.439009938556747	0.179361735303528	0.560875315537449
Merged-chr6-72433805-1	chr6	72433305	72434305	+	546.0	f1_balb.idr	3' UTR (NM_145569, exon 9 of 9)	3' UTR (NM_145569, exon 9 of 9)	-4878.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	2.67776495268422	2.66812641174275	2.80241623364015	2.76350822324278	2.61793411702788	2.75374176930488	-0.0211539302150196	0.977018516532178	0.994769134402338
Merged-chr7-100510838-2	chr7	100510338	100511338	+	908.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 3 of 8)	exon (NM_153527, exon 3 of 8)	3977.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	4.21608496882631	4.45057354961087	4.2154392256573	5.43509414882786	5.59405352195728	5.39493838497022	2.65062486264616	4.85067902004521e-10	5.57479695994367e-08
Merged-chr4-133156587-4	chr4	133156056	133157056	+	800.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	L2|LINE|L2	25923.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.55315670632548	6.51295715180725	6.83032512703767	7.02198440800999	7.31189659647958	6.85935703403995	0.707155709727452	0.00989613801610948	0.0997381119239871
Merged-chr17-25270060-2	chr17	25269560	25270560	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	intron (NM_011665, intron 1 of 6)	3371.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	2.74779608224628	2.74057328608408	2.97445069753127	2.73334896976267	2.85092419699032	3.04583898623412	0.292277929014563	0.685829462119499	0.916510043909729
Merged-chr11-80383279-4	chr11	80382821	80383821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	42.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	8.36383436881852	8.63305005208071	8.24776367608584	8.32505322242185	8.80669391688358	8.52110314719735	0.19591889303672	0.421087324519306	0.790122251976347
Merged-chr2-112448276-4	chr2	112447773	112448773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-6752.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	5.13868187846074	5.08543034858824	5.28692723200775	4.84620373174333	4.88767149094323	5.19782007013549	-0.406097671415111	0.28140015490935	0.679554913213873
Merged-chr2-157075800-3	chr2	157075283	157076283	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	3482.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	3.75662298084715	3.82520450673575	4.00124991113695	3.65777976279703	3.53524622819331	3.93161978312837	-0.495661225099597	0.367171512887246	0.752113401392775
Merged-chr13-113351774-2	chr13	113351274	113352274	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142115.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	2.52966359379069	2.26777808043894	2.48014818824651	2.49397351823572	2.1004615338349	2.14767551821567	-1.11546401199327	0.240960960243765	1
Merged-chr4-101255229-4	chr4	101254732	101255732	+	859.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	B4A|SINE|B4	10050.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.5052042514069	4.76825447106307	5.04430565755668	4.82109045756274	4.6307710475892	4.46569967803491	-0.302007625137352	0.491995900564728	0.83087234321328
Merged-chr7-125584162-2	chr7	125583662	125584662	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19267.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	1.95532459269567	1.89418879274554	2.23189874794836	2.22458444236695	2.10856142614204	2.30726175889759	1.40104929173171	0.148121311571493	1
Merged-chr11-119943899-3	chr11	119943362	119944362	+	959.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	770.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	5.99844766242914	5.80167427076734	5.55088163267759	5.63821055671424	5.32518084440446	5.43153994399113	-0.625926319274552	0.066270937863278	0.336131849340493
Merged-chr1-134196562-4	chr1	134196062	134197062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	3114.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	6.27759406804975	6.34527031082628	6.24147671203533	6.5052136017514	6.56750143963782	6.32232383040733	0.303260490466272	0.264802127478226	0.662666328517541
Merged-chr10-7954628-2	chr10	7954128	7955128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	1495.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.13953289148949	6.22744384359934	6.54489062001422	6.47103686666175	6.80611102835362	6.2033949975921	0.364344358501252	0.24471883934284	0.642068650565651
Merged-chr9-57820668-4	chr9	57820170	57821170	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	13564.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	4.30737178642899	4.36670919756462	4.23985044097575	4.25072624388023	4.00479944949152	4.3519039464111	-0.29731691831162	0.526362687623208	0.849399501808504
Merged-chr10-9718228-4	chr10	9717725	9718725	+	878.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33503.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	5.56072381345745	5.57288242885732	5.71607061589094	5.55746433986913	5.68999110958259	6.00883924390695	0.26292794959868	0.424938918512478	0.792848465017231
Merged-chr15-25606732-4	chr15	25606235	25607235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15815.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.5851528017604	4.61866746091509	5.02113208526549	4.22382003476071	4.71818449841202	4.81860068759869	-0.322051589860898	0.489534570910445	0.829739482756292
Merged-chr4-45889766-3	chr4	45889322	45890322	+	660.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-481.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	4.24905482602939	4.10567769141799	4.17583080819795	3.946908790162	3.98831349592708	4.10534288930196	-0.483527923741369	0.313609394434489	0.708121563861612
Merged-chr18-38993579-3	chr18	38993060	38994060	+	962.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175164, exon 1 of 23)	exon (NM_175164, exon 1 of 23)	415.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.1055818726231	5.05515047689215	4.64687755396722	4.93636388369769	4.51416335908695	4.2266091623085	-0.814826583039418	0.087090747183448	0.391245378017511
Merged-chr11-87024272-2	chr11	87023772	87024772	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-30510.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.50506085376874	4.46148977029265	4.46066760984132	4.05949550417639	4.12607860901165	4.35868158216429	-0.795230060671006	0.0805587472898576	0.375560731791894
Merged-chr9-83555181-4	chr9	83554681	83555681	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	6843.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.53619980935258	5.43293968469133	5.37789715338025	6.33351734870537	6.53551873219718	5.5117384018881	1.33885720813092	0.000458567641578024	0.00981391366266054
Merged-chr19-37019121-2	chr19	37018621	37019621	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93042.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	4.56582516093662	4.43278136597487	4.36242295415502	5.49848829851863	5.15212477547768	4.95547108208328	1.71431767681572	4.98326334803164e-05	0.00157749906526353
Merged-chr7-123393907-2	chr7	123393407	123394407	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	MER67A|LTR|ERV1	-13910.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	5.7879415935446	5.92820421950968	5.51607286893208	5.73590717642611	5.75674498087323	5.63752529276583	-0.0956719212451471	0.767195098799463	0.942573703853445
Merged-chr6-116676649-4	chr6	116676155	116677155	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2819.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	5.33078308831407	5.22135441704904	5.84150182822004	5.83846014267921	5.74540716618354	5.87940945660876	0.634422104323176	0.0723226760451516	0.353179484028697
Merged-chr3-138443097-4	chr3	138442595	138443595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	2.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	6.95210321308696	7.26473397754325	6.85204986881963	6.99135898145445	6.97293166403008	6.63213307362124	-0.242167904320372	0.377162991884523	0.759616521190546
Merged-chr9-45294518-5	chr9	45294019	45295019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24581.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	7.43363470854718	7.44963335354651	6.83478476559153	7.19603986309917	7.24224622931214	6.93992609127959	-0.212469470733227	0.453544538807399	0.80983494973791
Merged-chr5-66014636-2	chr5	66014136	66015136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10351.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	6.38102579047232	6.17534454999146	6.02149373777828	5.8173411602751	5.76943012912838	5.99018948784177	-0.613461932340413	0.0422617016396877	0.257561444983508
Merged-chr19-43898692-4	chr19	43898204	43899204	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-18936.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.57894572722828	3.51038939244606	3.43484564887995	3.39987537808795	3.40868262693963	3.20990181086674	-0.620252808758805	0.303782448180384	0.700294220341559
Merged-chr11-3178443-1	chr11	3177943	3178943	+	725.0	f0_balb.idr	intron (NM_030207, intron 5 of 32)	B2_Mm2|SINE|B2	15020.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.42484125360221	6.19206802313863	6.24538749519733	4.16279232204322	3.90848894926917	6.5173014935704	-0.792543268291814	0.712172075126169	0.924973293172533
Merged-chr6-116628834-4	chr6	116628285	116629285	+	832.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302440)	promoter-TSS (NM_001302440)	-84.0	NM_001302440	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	3.92383909226951	3.76086089067502	3.71444205635609	3.79742887500851	3.3956077652765	3.73248082584173	-0.529526004409367	0.3516535134533	0.739403630741215
Merged-chr9-13465833-2	chr9	13465333	13466333	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34472.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.62442282916	4.58088719654964	4.79657316476257	4.41214416659823	4.65026094966684	4.32625420383763	-0.441520132613518	0.312271178542704	0.707056878336701
Merged-chr3-96159646-2	chr3	96159146	96160146	+	979.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-2324.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	5.08079772648548	5.32017777663185	5.05204229701675	4.85956359283491	4.888644238973	5.08221207423044	-0.475459636011701	0.206121142138316	0.596803117650671
Merged-chr15-25835093-4	chr15	25834589	25835589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8209.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.14140215196631	3.91633759778867	3.89102762385673	4.07547724563814	3.41681199130296	3.9107808064024	-0.491670182479871	0.400703363899141	0.776924744715187
Merged-chr11-111290749-4	chr11	111290233	111291233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	224569.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	5.64504345567379	5.63545529869713	5.92352103543634	5.45893211783974	5.77593114284329	5.64218580426836	-0.174264889730268	0.597520804118537	0.880433364120803
Merged-chr6-83442542-2	chr6	83442042	83443042	+	828.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	787.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	3.8414897252683	3.77157180648667	4.21069082540995	4.05866793787031	3.66467653102585	4.19308155898275	0.108009767502029	0.845411973163689	0.963773214686551
Merged-chr8-125069082-1	chr8	125068582	125069582	+	1000.0	f1_balb.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	14887.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.69774313545969	3.82013923160678	3.88377568352045	4.14628981750622	3.8990802801524	4.27238982093811	0.933894142575853	0.0712121579437233	0.350057378045805
Merged-chr17-35978869-2	chr17	35978369	35979369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001282012, exon 1 of 4)	5' UTR (NM_001282012, exon 1 of 4)	154.0	NM_001282012	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	7.09208908958847	7.01418616192382	6.97640935132216	6.88791446349978	6.88972386653979	6.78668572352009	-0.263521137150856	0.275812371738134	0.673242318833586
Merged-chr11-69685910-4	chr11	69685390	69686390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023517)	promoter-TSS (NM_023517)	-336.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	7.69723271697609	7.64956439547918	7.836863908054	7.74751570890731	8.00755913398438	7.70635737308733	0.15483979906	0.499857860635207	0.834798644556416
Merged-chr7-12957686-2	chr7	12957178	12958178	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8160.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	2.84112433102535	2.80174244818829	3.11883246996241	3.09657405162367	2.9290191038914	3.35089267147875	0.95357953191815	0.178521702506158	0.559794804155803
Merged-chr1-20497752-3	chr1	20497253	20498253	+	869.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153179, intron 35 of 66)	(CTG)n|Simple_repeat|Simple_repeat	120304.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	3.17010082045436	2.98874612272667	3.73512064061476	3.13826332461748	2.96314010626645	3.14644440831383	-1.01963829321092	0.153430846649393	0.522367998690781
Merged-chr6-130337630-3	chr6	130337105	130338105	+	990.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289605)	promoter-TSS (NM_001289605)	21.0	NM_001289605	16634.0	Mm.425338	NM_010648	ENSMUSG00000067591	Klra3	5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1	killer cell lectin-like receptor, subfamily A, member 3	protein-coding	5.32829787059226	5.6861742309598	5.05691534738968	3.85143368605569	3.8437274480713	4.06146421994711	-4.00688551742217	1.52756337866537e-13	3.38987167662818e-11
Merged-chr9-25253070-4	chr9	25252589	25253589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359738, exon 1 of 13)	5' UTR (NM_001359738, exon 1 of 13)	197.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	7.77749702111647	7.79414046464699	7.65797825147616	7.88539897870361	7.50947646567466	7.83526867651453	0.00238284299593679	0.991920986446464	0.998351393644539
Merged-chr9-54586405-4	chr9	54585909	54586909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029573)	promoter-TSS (NM_029573)	-102.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	5.82925709816557	5.98811138505015	5.84545499339036	5.99936988290815	5.75862424430086	5.6693528950022	-0.128940226366684	0.678543521562448	0.913498554171186
Merged-chr6-72345186-4	chr6	72344689	72345689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-14.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	7.97140158191543	8.14500001602262	7.66940748579363	8.02248431791332	8.37380620277394	7.6874230435009	0.168046222895721	0.542801752210355	0.857370348607164
Merged-chr8-123039555-2	chr8	123039055	123040055	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	2729.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.6922298883438	3.50269435123602	3.63641092113063	3.61714851683347	3.76764884811434	3.48538416154027	0.0870776845407896	0.877876234061819	0.971748379457442
Merged-chr5-143050467-4	chr5	143049982	143050982	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	PB1D11|SINE|Alu	62538.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.91565642835256	6.15194781155413	5.84563657323613	5.93805465922702	6.06643086512481	6.11641036601631	0.0943189451794479	0.75375531229555	0.938570691167124
Merged-chr2-3284037-4	chr2	3283539	3284539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290370)	promoter-TSS (NM_001290370)	-173.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	6.24942821032498	6.4668445265457	6.08741282505114	6.02288861060046	5.9507238256425	6.25371573433258	-0.361317629260061	0.227706949667587	0.622842513404052
Merged-chr7-80057567-4	chr7	80057063	80058063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	17694.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	6.22798013820093	6.21570101094594	6.10106844762587	5.96026769799395	5.88382666530358	5.95660323531312	-0.442525965746133	0.121529230647634	0.466344042784002
Merged-chr11-52097664-2	chr11	52097164	52098164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1160.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	6.03869202794334	6.02471235793778	5.95744861260006	5.48878950082726	5.77934789344659	5.7486573286242	-0.586195009849819	0.0579609282331369	0.311089009638318
Merged-chr6-35178034-1	chr6	35177534	35178534	+	959.0	f0_c57.idr	intron (NM_027513, intron 1 of 42)	CpG	418.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	7.01832655772352	6.96798436485391	6.46915520686184	7.10057003270617	6.57187586014438	6.27776756021294	-0.2253990460781	0.502973465127776	0.836691193058519
Merged-chr2-153015419-4	chr2	153014892	153015892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178939)	promoter-TSS (NM_178939)	-9.0	NM_178939	68559.0	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	5.49125516570836	5.27212434975298	5.29451915612943	5.30835129028161	5.03962611836566	5.09059565372127	-0.42599216056152	0.234673355196825	0.630784177826417
Merged-chr2-33427224-4	chr2	33426734	33427734	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276332, intron 1 of 1)	MIRb|SINE|MIR	4090.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	5.17294151518154	5.03670657149621	4.37974913278422	4.89554155073412	4.98796237573338	5.0793779323875	0.147220187811673	0.743849837622966	0.935814517574594
Merged-chr17-66220557-4	chr17	66220063	66221063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97043.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	5.30878577778821	5.61163179518964	5.77433041634084	5.68952763664489	5.69141297509252	5.25751452290247	0.00239063643979523	0.994701912403946	0.998961028701257
Merged-chr17-26605109-1	chr17	26604609	26605609	+	593.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	43597.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.1654661722983	5.23509802420057	4.78125718651896	4.03919216445788	4.01309612675488	4.2779528007819	-2.49763251339594	6.53695609497005e-08	4.87042337900698e-06
Merged-chr5-16553483-4	chr5	16552991	16553991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-4.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	7.6083192467109	7.88726786917234	7.51230766589373	7.51520825089365	7.98740925646858	7.38516794535607	-0.024073742269483	0.930069485389051	0.984382342734132
Merged-chr3-15012488-3	chr3	15012000	15013000	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41299.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	3.2493164834961	3.04997803050562	3.55922391226388	2.96082608727635	3.04138716770329	2.97474413197455	-1.3117916121189	0.0598132153746408	0.31659911099829
Merged-chr4-129517074-1	chr4	129516574	129517574	+	555.0	f1_balb.idr	intron (NM_008228, intron 12 of 13)	intron (NM_008228, intron 12 of 13)	3493.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	3.04147848604534	2.87351265392086	3.01882265859079	2.77674417082965	2.67295819325391	3.03340898861917	-0.741286729075494	0.307218214967635	0.703285276522147
Merged-chr12-82246613-4	chr12	82246090	82247090	+	957.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	L1M4c|LINE|L1	-64759.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.72172560403492	6.03126037769987	5.72248802400549	5.91869999252686	5.77066271000606	5.98129455290502	0.0802921160876829	0.798855835269358	0.952063885260145
Merged-chr13-30695372-4	chr13	30694865	30695865	+	858.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	35306.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	5.89324984117637	5.95461949574526	5.27756900792477	5.36963112780517	5.44641482418062	5.56485146532641	-0.554350384524556	0.127085706495632	0.476395344690209
Merged-chr11-93725860-3	chr11	93725397	93726397	+	854.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159869.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	2.9824248593029	2.90339895976884	3.28984049568611	2.8391896412077	3.02112770525952	2.84588023340634	-0.711382929131769	0.321481045832153	0.714882390432811
Merged-chr10-17579952-4	chr10	17579454	17580454	+	845.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143274.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.9078414644077	3.8582966109829	4.06560801387805	3.68518493991784	3.85166668097747	4.25636954956875	0.00703385014681235	0.989623102525601	0.997611022725407
Merged-chr7-19750818-2	chr7	19750318	19751318	+	910.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1245.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	4.76835935993398	4.60354445526332	4.71630378819211	4.62756145282613	4.76485885997455	4.89207714619811	0.151660602189473	0.70700636902832	0.923163373151958
Merged-chr11-118491636-2	chr11	118491136	118492136	+	717.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039167, exon 15 of 15)	3' UTR (NM_001039167, exon 15 of 15)	14804.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	3.45438677898388	3.38476240893428	3.47861805688374	3.10831815096928	2.76138905781804	3.44498693964073	-1.25974601786309	0.0932484564224782	0.40669973592628
Merged-chr17-34033486-4	chr17	34032960	34033960	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	1110.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	5.71002274728642	5.82206755738993	5.87120649429049	6.45093172810285	6.10083661559686	6.09669570931632	0.742219943637207	0.0147919452314861	0.131370282721901
Merged-chr12-85712118-2	chr12	85711618	85712618	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	25398.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	5.25677768825521	5.17097878417515	5.0917748296439	4.92337218823782	5.03605811329644	5.22177878472533	-0.250845594823004	0.492621910285855	0.831177181177099
Merged-chr18-34955255-2	chr18	34954764	34955764	+	700.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-913.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	8.01886561528354	8.14314048209816	7.91798900822787	7.84191070372098	8.07629371958886	7.60229579371202	-0.239958796132525	0.31776980539055	0.711544401693674
Merged-chr10-127422230-4	chr10	127421722	127422722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	1355.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	6.08684038247188	6.18025159396293	5.94566286654447	6.02857397494503	6.15427360551702	6.28662205145077	0.126696188860554	0.663690344392053	0.907297356021587
Merged-chr8-46141084-4	chr8	46140585	46141585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16939.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	7.43550699225393	7.4927320123017	7.09332046187018	7.54805374829739	7.89834785522732	7.45258220180614	0.431187526646832	0.101013172407373	0.423857995444916
Merged-chr6-145747316-4	chr6	145746772	145747772	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-61111.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	5.45010330394932	5.78235356578177	5.97181844540249	4.61351716384657	4.71712557982512	4.59851146922046	-2.28090802212085	1.44013424540305e-08	1.25214932384009e-06
Merged-chr12-70232112-4	chr12	70231613	70232613	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045174, exon 2 of 5)	non-coding (NR_045174, exon 2 of 5)	4272.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	4.21325990413331	4.52328270459243	4.60643253595144	4.92596247388935	4.71793113210706	4.71280167563268	0.810544894386977	0.0605297253756965	0.318587980837558
Merged-chr5-113007206-1	chr5	113006706	113007706	+	558.0	f0_balb.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	8332.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	3.96743746919241	3.68845487313618	4.06221589967987	3.67238915174792	3.40854378246275	3.69926233177858	-1.06417113561117	0.060713687146661	0.319152472051258
Merged-chr5-151211063-4	chr5	151210551	151211551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20858.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	7.52748436326397	7.42244601118381	7.08191517429757	7.99870539955958	8.11210363972515	7.53679808648835	0.792204572413529	0.00359650384555505	0.0481276764202227
Merged-chr17-78410887-3	chr17	78410380	78411380	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	7272.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.4668366211425	5.57223417792724	5.42919577355595	5.51821327633302	5.81928718428076	5.55219847196108	0.285935837409822	0.38829160448945	0.76820261821444
Merged-chr3-101800037-4	chr3	101799531	101800531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36192.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	4.35944739243599	4.76304686399636	4.46369305105169	3.76813378786989	4.31412584202094	3.96151062948426	-1.3251630603705	0.0139121095591283	0.126237602202393
Merged-chr11-22972935-4	chr11	22972364	22973364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361661)	promoter-TSS (NM_001361661)	2.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	7.40768104776755	7.96743812482182	7.41659533368441	7.30906180274681	7.63836081547365	7.55583749397905	-0.178183394371718	0.516760110720403	0.844301274207181
Merged-chr19-7217682-4	chr19	7217195	7218195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-79.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	8.05310222217632	8.43718216612753	8.05682175144603	8.11459665681738	8.39854860590497	8.08377964530504	0.0167967871622694	0.944507224619098	0.987740456301761
Merged-chr14-25480337-2	chr14	25479837	25480837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21152.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.8336154516395	6.80028419029779	6.76593396180547	6.46386538878073	6.89662952403519	6.32392916127972	-0.312086362530086	0.282323925509939	0.680265519758811
Merged-chr7-45572139-3	chr7	45571634	45572634	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243052, intron 1 of 10)	intron (NM_001243052, intron 1 of 10)	855.0	NM_001243052	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	2.96828711386821	2.88873704028503	3.04431817583663	3.23511303964286	2.71333305318154	3.17464175269251	0.418040862313024	0.566476923543178	0.867389339126889
Merged-chr11-44523128-2	chr11	44522628	44523628	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	3751.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.18992512677503	5.52812090334646	5.5097151570569	5.83105313374037	6.03428425062845	5.86400350293215	0.926140648739445	0.00489630480213594	0.0603483528330807
Merged-chr11-93729333-4	chr11	93728829	93729829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	156437.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	4.21857117008016	4.13591967491254	4.02113400601331	4.05071311932987	4.25090016654732	4.18653966802295	0.0993956572769539	0.834828360370271	0.96138272464184
Merged-chr6-39129612-2	chr6	39129112	39130112	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	L1VL4|LINE|L1	11139.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	3.56457879728032	3.85181940295206	3.91617263904657	3.88167555784882	3.65646321589451	3.88879553906663	0.0829379224299159	0.879194803550717	0.972083703102674
Merged-chr10-121466646-4	chr10	121466158	121467158	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	9592.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.49950827157082	4.46792468697375	4.87464806664403	4.35653290277398	4.72350720373772	4.56831507500775	-0.125660584947361	0.778934302124346	0.945562264368846
Merged-chr14-54230845-4	chr14	54230331	54231331	+	577.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23098.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	2.82323892774675	3.22996666820824	2.76978875241281	2.86890969993267	2.73281959157273	2.97032117837015	-0.508296607139317	0.497985235051446	0.833856267944725
Merged-chr2-33404982-2	chr2	33404482	33405482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	26342.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	2.78849102815964	2.67931330022238	2.87600342397295	2.63669341640723	2.50780323420606	2.89020547910325	-0.534181156287972	0.486497689963813	0.827855940662378
Merged-chr7-16053363-4	chr7	16052856	16053856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18489.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.05289996582301	6.12975844225906	6.38617141179069	6.14434438150038	6.47676268240163	6.14898927968234	0.148101444937635	0.621897501959106	0.890881421072795
Merged-chr8-46850338-3	chr8	46849838	46850838	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110593.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.12184547950846	6.37185132763612	6.50770239075379	6.31873077684252	6.8366641091442	6.42345188315596	0.356518589769538	0.244901759357839	0.642344989479084
Merged-chr8-11461528-2	chr8	11461028	11462028	+	803.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16401.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	7.49965149188411	7.70689974237305	7.58803344429088	7.69841443154543	7.96949917269127	7.22355973357364	0.111463320274272	0.685446444821395	0.916264475254709
Merged-chr10-21810319-1	chr10	21809819	21810819	+	686.0	f1_c57bl6.idr	Intergenic	Intergenic	-71865.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.19221346895824	3.2542657714207	3.09990961818648	3.49189163962767	3.36368291835397	3.41004793704905	0.938316916887396	0.130333208335274	0.482560431744706
Merged-chr4-126260965-4	chr4	126260452	126261452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1453.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	7.35234742732829	7.34448217189514	7.37733371552262	7.32192754497017	7.42968324044684	7.40245752694635	0.0430493711713393	0.847908619028751	0.964318271116593
Merged-chr2-29620761-2	chr2	29620261	29621261	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	1041.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.24529039169117	5.41718119541752	5.12006771909408	5.38711632401038	5.53909574495667	5.03708435790952	0.154928508950555	0.677843282497323	0.913200198339414
Merged-chr2-91101577-4	chr2	91101074	91102074	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4896.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	4.61733959133465	4.66436291375302	5.13906427554798	4.89065744630913	5.11388695726962	5.074979300896	0.478427778477714	0.244649581625638	0.64198815440115
Merged-chr10-111662873-2	chr10	111662373	111663373	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68600.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	2.18272153386573	2.27315114713109	2.35107342049261	2.18977120664101	2.14432678572239	2.02673077939403	-1.05686893465477	0.249441196077961	1
Merged-chr10-127571285-3	chr10	127570776	127571776	+	792.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36717.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.21918277509459	2.56819518076605	2.47078196754293	2.53795281385127	2.59449153178569	2.90917714928333	1.50272459770513	0.0912852162928939	1
Merged-chr13-37631904-1	chr13	37631404	37632404	+	586.0	f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	-194134.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.88200469541415	2.96065994736265	3.35519031117721	3.34938139406331	3.26270467976618	3.67535784632039	1.49774755280783	0.0317336446729734	0.216061951227295
Merged-chr14-122644401-4	chr14	122643904	122644904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	ORR1B2|LTR|ERVL-MaLR	110076.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	5.97325984846292	6.01049384202095	5.89824095394271	6.25597282971524	6.69355772900606	6.23617292922854	0.773393910856807	0.0109984011948434	0.107463006883576
Merged-chr19-46648769-4	chr19	46648286	46649286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24214.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	6.75401613721188	6.60797743426244	6.73269803814415	6.47353673095157	6.39709659847026	6.16396239693936	-0.543123246591334	0.0452594193503671	0.268483983896748
Merged-chr16-36982574-4	chr16	36982076	36983076	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	-3440.0	NM_001037321	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	3.42534009256927	3.49591763650548	3.43854862521084	3.73660743218799	3.39584367279821	3.51048089168898	0.361151914322962	0.537242138191252	0.854346835765953
Merged-chr7-81319441-2	chr7	81318941	81319941	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008803, exon 16 of 22)	exon (NM_008803, exon 16 of 22)	25793.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	2.233495739979	2.26669769658231	2.47210940509345	2.24218955298305	2.02950616153059	2.29380300231662	-0.952185622048729	0.292665388244829	1
Merged-chr5-113846505-2	chr5	113846005	113847005	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 8 of 10)	intron (NM_011779, intron 8 of 10)	-16004.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	1.85624871718303	1.89641802194482	2.05697359419978	1.73401358934292	1.73116119387852	1.86681718495101	-1.47499184561028	0.151308800449902	1
Merged-chr19-11431402-4	chr19	11430921	11431921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12137.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	4.76303492260476	4.68413987258561	4.79091281035485	4.82982581402366	4.7626317216084	5.27994844811915	0.492101884330434	0.232764391960267	0.629051269162034
Merged-chr9-123863368-4	chr9	123862876	123863876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1347.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	5.99268155077915	6.51610939221329	6.64425553276452	6.63823474459788	7.00584681822831	7.07561656554954	0.806116536366905	0.010158587216789	0.101486228659616
Merged-chr16-10985905-1	chr16	10985405	10986405	+	546.0	f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	7216.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.40876623449548	4.30235331891789	4.53901438043513	4.39571620942028	4.38200990515743	4.30740579790111	-0.125104323042157	0.776813610018467	0.944892922631445
Merged-chr11-121804385-4	chr11	121803890	121804890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25828.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	8.20984437104509	8.10313497987412	8.00958343757367	8.00045138647285	8.03035588059472	7.87091424670087	-0.199475942334134	0.350775705848575	0.738770500461886
Merged-chr19-56741697-2	chr19	56741197	56742197	+	709.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19325.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.91062797371549	4.94742871632694	4.89637884673466	5.11837946987653	4.91176144581774	4.99822460426139	0.194235259021486	0.60404601044358	0.882941773157478
Merged-chr17-24696104-4	chr17	24695565	24696565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357836)	promoter-TSS (NM_001357836)	91.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	6.35692340333833	6.37349419319354	6.52146634472648	6.26995142233508	6.12795017992697	6.18589271471098	-0.366098981398505	0.182542765720847	0.565398543501872
Merged-chr17-17867939-3	chr17	17867409	17868409	+	670.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12721.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	6.37297862278282	6.03781421146639	6.05297554573892	6.38922322315865	6.28516675197825	6.34564161764273	0.281231100243692	0.331100687688787	0.722439386946599
Merged-chr12-84019210-4	chr12	84018738	84019738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9736.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	6.61118302340593	6.66580487192401	6.83147780873788	6.36809568519783	6.3503857999083	6.32308026332252	-0.566004968771322	0.0320348206546487	0.217276928352788
Merged-chr2-14229292-4	chr2	14228753	14229753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-161.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.96774197068654	6.79297955409065	6.71720210227183	6.98786117430822	7.07972741334092	7.20101848440193	0.387652193792862	0.121701517983166	0.466703839448027
Merged-chr15-86219427-2	chr15	86218927	86219927	+	730.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	L2a|LINE|L2	4968.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.54677426352136	5.34578059944402	5.73729302159458	5.23024979988015	5.14578076298247	5.59943926062187	-0.422941900638033	0.244640150571868	0.64198815440115
Merged-chr19-12818666-4	chr19	12818161	12819161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	L1MA9|LINE|L1	20082.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	5.32630811502076	5.56629609438999	5.16592579365975	5.3500085783476	5.49188654856441	5.33078815633104	0.0462123668431912	0.895813371564601	0.975665889379756
Merged-chr5-96922142-1	chr5	96921642	96922642	+	722.0	f1_balb.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	870.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.60630007901049	6.90434733783387	6.93887039332367	6.79426955585208	7.10409399813361	7.12521530114465	0.299910203196265	0.262443861799046	0.660458649221437
Merged-chr17-42883124-4	chr17	42882620	42883620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6696.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	5.25552585606253	4.86813828872042	5.17770003090657	4.65195152224267	4.90920703342937	5.04616294173103	-0.502682181195095	0.210041252910094	0.6020155203797
Merged-chr5-64230313-4	chr5	64229814	64230814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-43.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	8.49582042936052	8.44506542907025	8.08686416071976	8.22466068980098	8.36393881312621	7.9757023753784	-0.219138707440281	0.361534528709842	0.747413912465046
Merged-chr7-83853250-3	chr7	83852753	83853753	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31088.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	3.61408504200485	3.1648544157452	3.31069730320662	3.33482618185889	3.10523160133354	3.49262516516342	-0.252647683262569	0.699557528003914	0.920619136555148
Merged-chr19-47127236-3	chr19	47126737	47127737	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 29 of 35)	intron (NM_011053, intron 29 of 35)	11057.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.15274656016039	3.69438968481774	3.99512257982146	4.30989078838019	4.10926802927059	3.96384291747826	0.512897292817705	0.329169471001506	0.721152738507735
Merged-chr1-40786275-1	chr1	40785775	40786775	+	588.0	f0_balb.idr	intron (NM_172499, intron 2 of 5)	intron (NM_172499, intron 2 of 5)	4382.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	3.00044190484781	3.11789293021291	3.24379178115271	2.84007175016299	2.92234755285389	3.150425244558	-0.67965720091282	0.322255562429274	0.715695319452705
Merged-chr1-85732855-2	chr1	85732355	85733355	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	Lx8|LINE|L1	3751.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	2.60830064519781	2.60198055185398	2.77327804851634	2.53678285923196	2.45707787894662	3.06971110339542	0.271221398553754	0.740188827638497	0.934499978758628
Merged-chr7-122068273-2	chr7	122067773	122068773	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138589, intron 2 of 6)	intron (NM_138589, intron 2 of 6)	1075.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	6.32142370025595	6.56503190942077	6.42666138141221	6.34576742269424	6.42843278040425	6.33386559501604	-0.114299727751217	0.674168139317117	0.911841916826811
Merged-chr11-100547152-4	chr11	100546652	100547652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	MIR|SINE|MIR	1520.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	6.84301638500664	6.56356521293602	6.81095972726999	7.05257311826821	7.2891272280622	6.92830099697606	0.561565928388802	0.0333337976868106	0.222800115505192
Merged-chr18-35495573-4	chr18	35495093	35496093	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	3332.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	5.38172403305922	5.45873970401865	5.18190810839628	5.44274485510155	5.57449771490504	5.37939039430267	0.231574261992719	0.498436824275422	0.833865667012175
Merged-chr6-97458184-4	chr6	97457687	97458687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.01739662220149	7.86773422655936	7.60155957775552	7.90540791296759	8.22844855961033	7.89091709596301	0.2518347426323	0.304569226937766	0.700973852740454
Merged-chr12-70967454-2	chr12	70966954	70967954	+	716.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-7169.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	4.30690467405569	4.19974792853644	4.89770709139907	4.14732832971688	4.05717323535156	4.55085089200577	-0.603655779485166	0.245757547441355	0.642821080898342
Merged-chr7-25266812-2	chr7	25266312	25267312	+	937.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-887.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	5.33644431540956	4.87401496627935	4.53390255040671	5.10286921786351	5.29963978014877	5.41753302474566	0.632320250380113	0.149080498014666	0.515274779276237
Merged-chr11-17051740-6	chr11	17051240	17052240	+	881.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029861)	promoter-TSS (NM_029861)	-194.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	4.14281857764468	3.95581042097661	4.33109659516943	3.89688832329712	3.90370731515519	3.89873617652096	-0.724484215307939	0.151210621064294	0.518506648409409
Merged-chr2-60019314-4	chr2	60018811	60019811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	106429.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.45716063152847	6.59192636649115	6.45823468407574	6.06657718565267	6.31220361610437	6.22776620612751	-0.487213624899099	0.0780642908646383	0.368857099049678
Merged-chr2-181484188-2	chr2	181483688	181484688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9018.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	5.58753499008737	5.65100893300158	5.32251205559565	5.05258317642573	5.27389415384783	5.25699682067083	-0.671508365700989	0.056370058573752	0.306062477775414
Merged-chr8-108766682-2	chr8	108766182	108767182	+	758.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52038.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.65505957526138	3.73321256558309	3.94761234764557	3.7214325350708	3.48929141310684	3.72605935700983	-0.450607924284829	0.416141555341154	0.78703200622012
Merged-chr10-121371644-2	chr10	121371144	121372144	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 2 of 13)	intron (NM_029364, intron 2 of 13)	6554.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.31504049779653	3.76909154651115	3.84900243514896	3.54932886110248	3.35377524044098	3.96215345189125	-0.0704881361143482	0.911859142673145	0.980211734893551
Merged-chr14-40965717-4	chr14	40965246	40966246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	1150.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.85101316791072	6.04404904061068	5.95272619195623	5.85682545337678	5.81476842398229	6.03593280826004	-0.0964729492297951	0.748393881731322	0.936975942448953
Merged-chr2-160019125-4	chr2	160018604	160019604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	2451.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.22812826519145	6.8179114827324	7.2819661668763	7.02522166549602	7.14691822345651	6.89648688162765	-0.132482776660979	0.621362243942205	0.890674900862132
Merged-chr1-156043217-3	chr1	156042693	156043693	+	709.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	2332.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.65477922902658	3.38968853576325	3.47838035440878	3.75828909639175	3.85412419231778	4.14248187308139	1.36487455095605	0.0171935182677689	0.14600937687724
Merged-chr17-27042958-4	chr17	27042461	27043461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13702.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	5.65320407574881	5.54751878691676	5.84184429520692	6.10195167056004	6.04633013406419	5.8540183170773	0.596885639699475	0.0539304051385689	0.297929836975151
Merged-chr13-81055749-3	chr13	81055241	81056241	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	Lx7|LINE|L1	91667.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.0045659651076	3.77171206691362	3.77503076883317	3.96943798308569	3.73116899067765	3.99573184588385	0.120782206407699	0.818739148403147	0.95706361736001
Merged-chr6-122309893-4	chr6	122309381	122310381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1161.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	7.72779419833514	8.11979166900756	8.02663418127975	7.96911534914558	8.43030807122019	7.86584990375085	0.215637022564385	0.413333107958123	0.784932929682752
Merged-chr2-131171588-3	chr2	131171085	131172085	+	983.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027641, exon 7 of 7)	3' UTR (NM_027641, exon 7 of 7)	3225.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	3.93969552812003	4.0773801087657	4.19105015312496	3.21232334604953	3.36672747401125	3.41277242287887	-2.71317057446262	1.72906741155565e-05	0.000644011822653188
Merged-chr3-90509903-1	chr3	90509403	90510403	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-405.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	7.26690577471754	7.57574495233594	7.46118460748313	7.5626234451871	7.62509825338277	7.48744664294499	0.177749392211126	0.447140277540575	0.806270036091875
Merged-chr12-102439222-3	chr12	102438752	102439752	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	561.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.45469820908286	8.64345357933694	8.34891332873932	8.53922073477246	8.84767459088529	8.22426621282906	0.109766089105841	0.660057831504015	0.905843288604423
Merged-chr17-57276165-2	chr17	57275665	57276665	+	992.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	5.77853800265752	5.70007803268425	5.66696344792513	5.96221937721234	6.12699013165606	5.91128370804707	0.51811005131828	0.0865344789785672	0.389672092588409
Merged-chr8-107049118-1	chr8	107048618	107049618	+	790.0	f1_balb.idr	promoter-TSS (NM_026513)	promoter-TSS (NM_026513)	-504.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	4.60294137641826	4.58794326593928	5.14419242181036	4.53048253374977	4.77481027612996	4.98967629816938	-0.043721112347314	0.922072503178971	0.982542868764899
Merged-chr13-76098690-4	chr13	76098199	76099199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	-35.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	6.05449041995607	6.04020040601274	5.89374071385602	5.84756738484977	6.25868050902117	6.24218831328894	0.219117386420856	0.474677287098069	0.821664499521211
Merged-chr19-17394007-4	chr19	17393493	17394493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-50.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	6.79673424780572	7.07341193918113	6.42879806674623	6.37431600651286	6.33751572566733	6.24213646723247	-0.772024999338115	0.00917645087677816	0.0948396627195326
Merged-chr2-60825925-1	chr2	60825425	60826425	+	591.0	f0_balb.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	55513.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.3221504582844	3.44461796174443	3.63063029937459	3.59872922202015	3.34491937269438	3.88997189620205	0.55156603643093	0.366435867269067	0.751494729098773
Merged-chr2-153139616-2	chr2	153139116	153140116	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	(A)n|Simple_repeat|Simple_repeat	-21685.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	2.84941377331132	3.01240192045152	3.28755075308935	3.06327027713796	2.83082113982713	3.50863098572462	0.433324590121115	0.558866791876712	0.864883618129129
Merged-chr14-54406888-3	chr14	54406368	54407368	+	798.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	2604.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.19122183672213	6.45683243633108	6.2348216446982	6.1986967765173	5.89455550791031	5.80363394571574	-0.546944769519044	0.0726329092297313	0.354029588845849
Merged-chr10-85957043-1	chr10	85956543	85957543	+	625.0	f0_balb.idr	intron (NM_145422, intron 1 of 11)	intron (NM_145422, intron 1 of 11)	750.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	6.13781659982054	6.51145353098844	6.28431725129348	6.17989534976569	6.25983968437855	6.0894994737434	-0.23351442365735	0.423154211004626	0.791863924096789
Merged-chr5-66074658-2	chr5	66074158	66075158	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	23521.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.86543314067605	5.28455530987867	5.50516094159113	5.7648368358972	5.71605178809152	5.76056877351187	0.306513082256792	0.378603449779096	0.761079326178183
Merged-chr6-17728691-1	chr6	17728191	17729191	+	554.0	f0_balb.idr	intron (NM_001289624, intron 1 of 15)	B3A|SINE|B2	-14901.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.40104967231877	3.23985288009277	2.99994389813737	3.04279441188417	3.07291028944947	3.31124927690594	-0.364490920602379	0.588776872660634	0.876650937479947
Merged-chr2-28496879-4	chr2	28496381	28497381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139197)	promoter-TSS (NM_139197)	-10.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	6.23089159887982	6.5485029537799	7.00120452953029	6.69829850201583	6.88760237638718	6.83200483689364	0.293049341289813	0.341612873996414	0.730935106878357
Merged-chr11-95412716-2	chr11	95412216	95413216	+	830.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	4.19382032243215	3.71016534245208	4.59781104968584	4.72576234398927	4.44136663657692	4.80747407341607	1.14181469831482	0.0359729210578661	0.233208789667543
Merged-chr2-150830684-2	chr2	150830184	150831184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11886.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.5362153398287	6.69473434182914	6.67651972193225	6.50630137054289	6.62550548100181	6.60482784448358	-0.0884686378514277	0.732187200073381	0.931719277771744
Merged-chr1-34490328-4	chr1	34489815	34490815	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	-8097.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	3.59213584669789	3.45252997733816	3.52812078752301	3.63608388807515	3.51314453400811	3.54435736016785	0.142150780650364	0.80100245309232	0.95274755793001
Merged-chr8-71922815-4	chr8	71922316	71923316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133358)	promoter-TSS (NM_133358)	-9.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	8.02143970939274	8.34227554839045	8.23316732954431	8.09837600295455	8.04379600385319	7.98642202188378	-0.22744976177366	0.299464658934862	0.696241066794673
Merged-chr2-62656279-4	chr2	62655773	62656773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-8054.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	4.4958196514197	4.46267449323585	4.28715939349973	4.51578008688731	4.59645106821629	4.87834574840618	0.585902164092981	0.180503619526106	0.562412299358467
Merged-chr1-36918136-3	chr1	36917622	36918622	+	804.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	21405.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.6544338821204	4.41547393149539	4.25704420516468	4.06550006307212	4.09759927664155	4.18377468232064	-0.93726082590378	0.0460778434755709	0.271482443050586
Merged-chr3-95293806-4	chr3	95293314	95294314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	10879.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	7.57303065749544	7.40196646192117	7.11399905807554	7.26535000842582	7.32591647780927	7.02175883193551	-0.247531297774858	0.338988545555597	0.728951920358235
Merged-chr8-120598922-3	chr8	120598417	120599417	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9842.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.13857954844857	3.38654834294365	3.46132263630665	3.62925588654315	3.82932808132044	3.74398160959457	1.49895699122473	0.0126127123090216	0.11832839943083
Merged-chr12-98746908-4	chr12	98746421	98747421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-47.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	6.84521638786179	7.02131932693344	6.52539901356325	7.2654708677743	6.99666623376925	6.87202906201085	0.358155726383342	0.201446424661752	0.590984054786189
Merged-chr9-21545122-2	chr9	21544622	21545622	+	750.799988	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206536, exon 6 of 6)	3' UTR (NM_206536, exon 6 of 6)	-1772.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	3.04243698660815	2.89990059621603	3.28856769366015	3.07188425142515	3.11130006808278	3.19562261109918	0.202900703065064	0.761851088353001	0.941338831902106
Merged-chr10-6715062-2	chr10	6714554	6715554	+	841.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43539.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	3.19953357269387	3.00111065732683	2.90879014356267	3.37755540273123	3.12385983158011	3.28950957711843	0.932891651103729	0.168418138925904	0.544984697197893
Merged-chr4-97751229-4	chr4	97750726	97751726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-26400.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	7.50241245852993	7.97557319730165	7.6265823115485	7.66986893867712	7.95114259118107	7.66451988624573	0.074756862969595	0.768665526169746	0.942904839921162
Merged-chr8-128654942-4	chr8	128654448	128655448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30706.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	7.25889704065045	6.98564845020594	7.17951408317006	7.05906277479575	7.2001871909106	7.45396057886917	0.146087737723577	0.566841129478856	0.867634455258659
Merged-chr4-40970289-2	chr4	40969789	40970789	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	-617.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	6.39159370020058	6.07892269671254	6.1009425071131	6.67392553648616	6.50119979111258	6.3924568835423	0.535898560326757	0.0620642566580949	0.323557142071051
Merged-chr6-72753782-2	chr6	72753282	72754282	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	35263.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	4.30177398737053	3.87943561320941	4.25775765349703	4.53635561686198	4.79568729738208	4.3273006102256	1.09399214858622	0.025324692222204	0.188510064950481
Merged-chr10-21619437-2	chr10	21618937	21619937	+	678.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	MLT1I|LTR|ERVL-MaLR	26292.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.71003104884301	4.32789218113265	4.7767148272706	4.51359891957356	4.43383693526834	4.45071397234295	-0.363873395470791	0.412715462800404	0.784565767944438
Merged-chr12-81754851-4	chr12	81754349	81755349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	26321.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	5.04340924797595	5.40084845922262	5.43017721795102	4.92804550352434	5.06512646028194	5.51913059007365	-0.232236866158098	0.557687411286183	0.864302294338175
Merged-chr14-27443992-4	chr14	27443495	27444495	+	901.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028945, intron 6 of 23)	Lx7|LINE|L1	15161.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	2.94349279376117	2.77787886506641	2.79727819521551	2.83250409665125	2.78004408780991	2.98985777352538	0.110435642873484	0.876485367907806	0.971334744650699
Merged-chr10-99090077-4	chr10	99089582	99090582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17000.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	3.61825062375557	3.44981929956131	3.60947322962575	3.62807079473543	3.4498646932194	3.73030176412394	0.146315968041638	0.796917071329777	0.951572880317229
Merged-chr12-51666865-3	chr12	51666346	51667346	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-24120.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	3.56523681454658	3.74915554565719	3.66076034879577	3.55320750493492	3.32864114212443	3.62675391115328	-0.574057090485251	0.318799061801271	0.712819123861698
Merged-chr5-53188810-4	chr5	53188313	53189313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	24639.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	4.4279596487515	4.73724467177731	4.35185735979236	4.15312874601306	4.15817634080265	4.70149676396232	-0.431805486051393	0.377618503945715	0.759992892422651
Merged-chr11-61413918-2	chr11	61413418	61414418	+	779.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35843.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	3.29524112526955	3.21187688795021	3.44027231982776	3.26917801806692	3.38528908715086	3.56178123710237	0.361942399871026	0.552478975569629	0.861745885019732
Merged-chr9-46185313-2	chr9	46184813	46185813	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-43317.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	2.52991422727095	2.42248198636798	2.83625204708039	2.33185494696584	2.37840311945735	2.42598047205149	-1.37754467646188	0.103379613362247	1
Merged-chr17-50996474-4	chr17	50995983	50996983	+	881.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	162895.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	4.45404405637273	4.71259294335731	4.78402810275963	4.73614776964297	5.05062423956257	4.92237231000248	0.598152822840342	0.145666793716795	0.50882173592994
Merged-chr18-60238843-2	chr18	60238343	60239343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	26766.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	5.04843377992249	5.29370401112559	4.72849783597102	5.50182722967597	5.26865789058638	5.18713388104039	0.547566636655487	0.166033769642653	0.541111888340174
Merged-chr4-66857193-4	chr4	66856686	66857686	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29635.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.59043697339789	4.36248425363726	4.52127965897533	4.00370710003845	3.9324406522839	4.05497386514593	-1.39473484211956	0.00314810730889799	0.0437038145536448
Merged-chr7-45124455-4	chr7	45123893	45124893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-4.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	7.26124154192225	7.6569401919293	7.49456676809565	7.22430811733311	7.54966292936719	7.50186969347814	-0.0700744668583288	0.781840852591176	0.946301855534155
Merged-chr7-45590604-2	chr7	45590104	45591104	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009737)	TTS (NM_009737)	-15428.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	4.9340637189171	4.8006039397476	4.55457693443146	4.92045336894958	4.90757534174806	5.18102527774112	0.481024532274295	0.234493945000687	0.630591822623526
Merged-chr2-120576277-4	chr2	120575799	120576799	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	8628.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	6.50776671596428	6.10779605236436	6.2135323232821	6.48665457862661	6.87536696127379	6.27438037629077	0.473595632472356	0.133042413796004	0.488017685026359
Merged-chr2-22775143-3	chr2	22774635	22775635	+	849.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	808.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	7.18184771733691	7.21292466298436	7.03386628623552	7.48810761228871	7.24829929591875	7.30304333983185	0.297484313596953	0.213466883728112	0.60642377812389
Merged-chr5-65537796-4	chr5	65537287	65538287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310618, intron 1 of 4)	CpG	542.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	8.58304835741232	8.61787735872297	8.35164753723908	8.43237419467765	8.53616931274473	8.47067704661192	-0.0637741982334276	0.759379874121975	0.940400954978216
Merged-chr1-177258537-4	chr1	177258036	177259036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9769.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	7.67832062341893	7.30704699662201	7.46548872946367	7.6405551176718	7.14748764849331	7.63731485227454	-0.00578115129629087	0.982859401177151	0.996148079772326
Merged-chr18-23807108-2	chr18	23806608	23807608	+	814.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3138.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.30387217843225	7.29126873453374	6.85841999235908	7.44912263943637	7.53060232449409	7.29525982693819	0.377664852404482	0.143010569043104	0.504841688046269
Merged-chr1-36709299-6	chr1	36708834	36709834	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146107, intron 1 of 10)	LFSINE_Vert|SINE|tRNA	591.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	6.58513594321095	6.35613731409896	5.92612165665397	6.43049325039075	6.48367853708325	5.98874854169224	0.00072708354912963	0.998255756948437	0.999590080903912
Merged-chr7-43397615-4	chr7	43397139	43398139	+	826.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10641.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	3.33011727767456	3.74587837758345	3.62433399945203	3.35138343956454	3.52725584438935	4.02093204652215	0.271392855439457	0.669134802543919	0.909523141826881
Merged-chr13-98313749-2	chr13	98313249	98314249	+	905.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170540, exon 3 of 6)	exon (NM_001170540, exon 3 of 6)	3218.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	2.79568559908057	2.95255984721767	3.16020953875428	3.12317326511716	2.89317370029215	3.11956026174559	0.338224620762903	0.627647035385548	0.893330206932885
Merged-chr7-83858162-4	chr7	83857640	83858640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3A|LINE|L1	26201.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	4.31873964590279	3.98374041901077	3.83429653679932	4.25021942992758	4.00331029904004	3.79392656321505	-0.102130169315006	0.85033920132079	0.964858782843783
Merged-chr10-14174352-4	chr10	14173853	14174853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207974.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.16347603258197	4.54558871631221	4.65956632547892	5.08824480525836	5.05598859059643	4.92818600156139	0.436501186991136	0.307535346241591	0.70366279189546
Merged-chr9-123949635-4	chr9	123949151	123950151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	19041.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.63024468254785	5.6317142487386	5.52764417296518	5.29335963643217	5.41609771876195	5.31713272768578	-0.486053068057362	0.139668423894672	0.499356774606963
Merged-chr9-22003329-2	chr9	22002829	22003829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	341.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	6.24457823623301	6.2563986808018	6.42366014836008	6.18069336486634	6.35572333339535	6.41093600420049	0.0219007373783951	0.937109612262444	0.986041955253459
Merged-chr13-3918170-4	chr13	3917665	3918665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019671)	promoter-TSS (NM_019671)	55.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	3.76696132928686	3.57955918151964	3.7406521953639	3.37431589283219	3.66458198747991	3.60339818942738	-0.484451448147786	0.396974390788183	0.7738750578522
Merged-chr2-103059419-3	chr2	103058926	103059926	+	604.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	14087.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.16356795670347	4.00480265950915	3.70203090526543	3.58130731335381	3.92229911358493	3.71829145565105	-0.692847259885453	0.219347845878926	0.613520643565823
Merged-chr10-98915035-4	chr10	98914545	98915545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-107.0	NM_001359507	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.49395137173484	8.0256801765385	8.08988928611165	8.16724073037091	7.83079538021933	7.95403581405168	-0.329112462827471	0.185652795103301	0.569911016727934
Merged-chr4-26441717-4	chr4	26441193	26442193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95041.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	4.11854367311527	4.03103220701421	3.75659249510771	3.48495103691932	3.66848601911627	3.60609998280245	-1.29185022657913	0.0208537216975002	0.165996131543049
Merged-chr18-36713554-4	chr18	36713054	36714054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13261.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	5.96665198368382	5.94768829126348	5.81635261388492	5.02509136526346	5.0123977664893	5.48275362533973	-1.41811538599179	4.56883162124538e-05	0.00146272928642011
Merged-chr11-19927376-2	chr11	19926865	19927865	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2923.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	3.69824543132192	3.73416021483664	3.7168370180495	3.59827296098707	3.52385575977632	3.27300252099085	-0.838467636517441	0.153592136085879	0.522532447327076
Merged-chr11-70229960-2	chr11	70229460	70230460	+	664.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-162.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	3.73795130531478	3.54746524154698	3.60601784635025	3.87295156246168	3.49511488699145	3.62271063611219	0.12803142442414	0.821774955069226	0.958023303204974
Merged-chr7-89337988-4	chr7	89337483	89338483	+	969.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	804.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	8.01825390813003	8.40314009884798	8.03398259068263	8.65132274489238	8.69772085074087	8.03633132112741	0.466084781547847	0.0851909141177284	0.386382076850973
Merged-chr16-91731269-4	chr16	91730768	91731768	+	886.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1897.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	6.50786585966574	6.54506258469355	6.0810103274099	6.66445174052277	6.80406141099673	6.57320004683347	0.44923325728779	0.118517817940479	0.459921210483695
Merged-chr4-63587259-2	chr4	63586759	63587759	+	692.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356354)	TTS (NM_001356354)	13505.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	4.58474934682438	4.65117851542598	4.35468196877952	4.30458075028793	4.32848165057886	4.74715891465294	-0.196327958334976	0.666970836902606	0.908463623849139
Merged-chr10-8881299-6	chr10	8880766	8881766	+	935.5277710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4804.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.75020958486731	7.60937129789023	7.56100156056225	7.51790068155137	7.87430159589883	7.39792417189807	-0.0309944532997889	0.901114047900623	0.977088121586474
Merged-chr15-76625670-3	chr15	76625174	76626174	+	765.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	TTS (NM_183091)	TTS (NM_183091)	410.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	5.98413486968067	5.97265916624065	6.25180220052535	6.23411650727655	6.15872361993431	6.14921045279575	0.197848009683203	0.493527952552129	0.83136904293871
Merged-chr14-32159346-3	chr14	32158840	32159840	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-547.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.05912284109399	6.03083554301854	6.2770171342925	5.97907957791007	6.37846622882775	6.11151245358977	0.0976056530721212	0.747213323514489	0.936597114065251
Merged-chr1-131436665-3	chr1	131436094	131437094	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	90767.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.83939110189845	4.77590982991882	4.89499031579868	5.00994742688963	4.99495081900234	5.25678846221995	0.544240243578563	0.151323436290654	0.518614043990544
Merged-chr2-84645608-3	chr2	84645112	84646112	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	3868.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.25297500716043	5.38668516350279	5.4547985721738	5.86793199924238	5.65090487760013	6.05749688128818	0.924456698819966	0.00572973279991993	0.0674151027737185
Merged-chr19-40649163-1	chr19	40648663	40649663	+	590.0	f1_balb.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-10607.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.7332257917636	4.37277929800433	4.20925483390414	4.06908009223386	3.99074202180065	4.72849499269031	-0.413756437032861	0.440518547387918	0.801871784087343
Merged-chr1-152625876-2	chr1	152625376	152626376	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016846)	promoter-TSS (NM_016846)	-659.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.05108853763659	5.48423372422067	5.05546337810711	5.20991311473141	5.13391412901407	5.12079921393841	-0.139308405716537	0.712023386080346	0.924891945289204
Merged-chr3-81113082-4	chr3	81112540	81113540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	B4A|SINE|B4	76624.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.22098229380366	6.09895752146655	6.10290928789083	6.31527208971547	6.40377689478007	6.09611166374454	0.241530806941888	0.397540593533876	0.774485045113678
Merged-chr11-37042916-2	chr11	37042416	37043416	+	670.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98675.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.19050595068559	3.96825885726367	4.18648801189943	4.53921538181976	4.699750437189	4.30382095790776	1.11195762660205	0.0173754472925924	0.147126776360787
Merged-chr8-125460029-2	chr8	125459503	125460503	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	32830.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.89432721715438	3.61961774381865	3.95480113233001	4.52507533984741	4.5636112718093	4.22523759883954	1.81676939936733	0.000347990888579419	0.00787693848120683
Merged-chr8-79372864-7	chr8	79372392	79373392	+	970.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	26576.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	7.15430559025503	7.37063540222462	7.06348853369584	7.18225795555418	7.60913808984161	7.13464099898193	0.192920177495969	0.472685929206748	0.820550293768681
Merged-chr8-79392807-4	chr8	79392318	79393318	+	818.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	6650.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.47829894042058	5.33883110657283	5.3993391631345	5.4248859088853	5.68781590012651	5.33716104658902	0.18894408883731	0.581177339966325	0.873246537431079
Merged-chr7-132803722-3	chr7	132803216	132804216	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9480.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	5.66146501091243	5.91471214502271	5.1758684065183	5.27767519244784	5.24615636360234	5.09354935393579	-0.812773532449107	0.0332554956380125	0.222527002898894
Merged-chr11-116850250-3	chr11	116849762	116850762	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028865)	TTS (NM_028865)	2832.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	4.38067248508515	4.36920831456358	4.12900226296436	4.44407262168957	4.73148744846084	4.20027668026639	0.473883019921784	0.321488248736432	0.714882390432811
Merged-chr11-95826541-2	chr11	95826041	95827041	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	ID_B1|SINE|B4	2041.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.7836866595885	4.60013400206909	4.98081165426915	4.82573368740508	4.71386387265493	4.63610766664487	-0.131842502665946	0.747737719282017	0.936732311743722
Merged-chr11-5109912-4	chr11	5109387	5110387	+	771.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9722.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	3.38124741868072	3.446784870907	3.24115193771544	3.45658870035354	3.43144489284969	3.43038586295026	0.284706482774067	0.632658220423169	0.895615821573662
Merged-chr11-29728114-4	chr11	29727606	29728606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	9543.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	5.73075246586701	5.93426814275199	5.57048566112773	5.71595166669942	5.76154200439878	5.60457205898208	-0.114267124859196	0.722241166534055	0.92872455507539
Merged-chr16-4727077-2	chr16	4726577	4727577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	716.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	7.40082999238648	7.68505148177211	7.45835888212224	7.81707756957636	7.98322334913567	7.50483198772165	0.387980342197954	0.121776691354703	0.466846919482577
Merged-chr5-24686861-4	chr5	24686306	24687306	+	911.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	B1_Mur2|SINE|Alu	991.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	7.92450011613619	8.23237039979917	7.74494153275585	8.06619465928118	8.58917686315474	7.85443213128011	0.322957499723215	0.257717191876206	0.655122723295615
Merged-chr9-64956534-2	chr9	64956034	64957034	+	863.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4298.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	3.04592534262973	3.01908173458641	3.08505062577684	2.89000530553316	2.76566647199072	3.09979931225617	-0.623923597823018	0.369144802081209	0.753878426844475
Merged-chr15-94545655-2	chr15	94545155	94546155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1995.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	3.73451869664157	4.11123387375459	4.36288444156652	3.96069240134817	3.8956816822863	3.99556199680548	-0.40654337110925	0.445777536406896	0.805355477980437
Merged-chr16-75877403-4	chr16	75876906	75877906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 4 of 7)	intron (NM_023380, intron 4 of 7)	31860.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	6.27551327267039	6.33361365655593	6.10819613646902	6.20901814364484	6.40292266816741	5.98008266132877	-0.043880361694933	0.882446910376444	0.973184220613163
Merged-chr11-69394357-1	chr11	69393857	69394857	+	549.0	f1_balb.idr	intron (NM_001045525, intron 3 of 3)	intron (NM_001045525, intron 3 of 3)	989.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	3.67967580614385	3.33564464984757	3.64556809564334	3.41112350114602	3.3912592752042	3.50626061862162	-0.463313506994413	0.434606552253956	0.798506050166648
Merged-chr2-155284850-3	chr2	155284337	155285337	+	883.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 11 of 11)	intron (NM_001004721, intron 11 of 11)	8473.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	3.75896465346932	3.63390853389669	3.97785494897198	4.50355538273073	4.74014898642779	4.38280295374373	2.24347107985646	9.5845200461262e-06	0.000385829097241446
Merged-chr6-87452142-3	chr6	87451641	87452641	+	731.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23147.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	2.8893919582895	2.91967647176589	2.94983250709657	2.93391934960188	2.51735212082612	2.71209541306432	-0.970077656897258	0.209062073816588	0.600338259053888
Merged-chr5-137628094-4	chr5	137627614	137628614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	7.85806735169747	7.91419281402864	8.00637305855922	8.23064487430739	8.43630962353664	7.85741708070449	0.395795435172679	0.105111668383785	0.432569944254313
Merged-chr8-109863606-4	chr8	109863115	109864115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-4988.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	6.23790924806214	6.52182106691706	6.53298885686865	6.45532358300114	6.70289082570119	6.75177960847738	0.332736421738438	0.231516479258557	0.627472173745026
Merged-chr14-73148183-2	chr14	73147683	73148683	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	intron (NR_033185, intron 1 of 15)	5398.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	2.94791781528331	2.84229473220952	2.98656050591925	3.06223533168042	2.96373974820617	2.81156949082961	0.138346079611135	0.842341920531641	0.963014702903935
Merged-chr16-55753167-2	chr16	55752691	55753691	+	649.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	68947.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.48958108384616	6.02683672147798	6.12943266697682	5.863416510742	5.83502944653269	6.53916888951961	0.356008133027015	0.348243265293273	0.736107144694558
Merged-chr5-142909297-4	chr5	142908810	142909810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2556.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.93209773458415	6.66110940162338	7.08997923149094	7.30853623781017	7.47369103173327	7.40912942352099	0.756474062778293	0.00283148327095316	0.0402532137381634
Merged-chr11-44414055-1	chr11	44413555	44414555	+	587.0	f1_balb.idr	3' UTR (NM_001303244, exon 8 of 8)	3' UTR (NM_001303244, exon 8 of 8)	13992.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.90318613363934	6.82090760150555	6.8716284138338	7.13810394337755	7.50176341248634	7.22042595099652	0.663182083540526	0.00823107025052995	0.0878290450636184
Merged-chr11-6629371-2	chr11	6628871	6629871	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-3304.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	2.56264310960794	2.60365182284645	2.90589400559778	2.84919284467532	2.6210448997357	3.03452689327314	0.755843021812673	0.328905474546301	0.721070592936384
Merged-chr8-124896922-4	chr8	124896435	124897435	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	770.0	NM_198103	102058.0	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	5.11443045501416	5.12787587135873	5.24709125856565	4.9652799671133	4.71824635523911	5.15433933445297	-0.462438194937239	0.227234118533554	0.622375640490653
Merged-chr9-80081158-4	chr9	80080656	80081656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	ORR1E|LTR|ERVL-MaLR	14253.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	3.66225461364557	3.3087917763075	3.52298626964961	3.35775586646218	3.7813406925974	3.59392733418226	0.311926494874482	0.608713090158975	0.885006356798728
Merged-chr10-115313947-2	chr10	115313447	115314447	+	894.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1644.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	5.08523615537803	5.14545404799336	5.02195763830446	5.19939621753749	5.1597126903396	5.08700290533721	0.130983847678444	0.714174257904607	0.925756575982089
Merged-chr6-50295362-3	chr6	50294859	50295859	+	770.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-33590.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	2.84310766993229	2.95286813102967	2.95512369395152	3.01051789202661	2.96608030661248	3.08617363668645	0.480838481635923	0.476332662774301	0.822520021424582
Merged-chr18-10182229-4	chr18	10181710	10182710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009071)	promoter-TSS (NM_009071)	-418.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	7.55767755110628	7.9760867643568	7.62148889436926	7.51853309273182	7.59673160927298	7.6873303536153	-0.197361871901577	0.4168104529762	0.787689397484526
Merged-chr5-63837268-3	chr5	63836769	63837769	+	925.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	24774.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	3.25376266943353	3.51838441422621	3.2578376010083	3.37845737930726	3.26373069123878	3.3875461086102	-0.0527506047677239	0.931679715978283	0.984929477721491
Merged-chr9-57524624-3	chr9	57524128	57525128	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	3396.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.17541097849945	5.22480124040282	5.72511266401434	5.53222362720419	5.85921120205654	5.78644487363859	0.662169817860661	0.0668816353124283	0.338056561236577
Merged-chr6-123264306-2	chr6	123263834	123264834	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	2227.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	3.35286143720994	3.43307902435534	3.14809977799698	3.40800493400769	3.01537105169046	3.34006361679121	-0.237889854300316	0.718069245691955	0.927262800228695
Merged-chr2-144244886-2	chr2	144244386	144245386	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21316.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	4.08600089921915	4.0933248271502	3.82539186829622	3.55008934801791	3.72879005034647	3.94564552809999	-0.844123437544279	0.119290679949908	0.461750746246286
Merged-chr4-119195340-4	chr4	119194833	119195833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024462)	promoter-TSS (NM_024462)	23.0	NM_024462	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	5.85409197581064	5.72058038014267	5.81332997615999	6.11031983113439	5.75187128445817	5.74532562980178	0.153604120379161	0.627645542278819	0.893330206932885
Merged-chr3-8994451-2	chr3	8993951	8994951	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	9753.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.47384952351318	5.27300367557543	5.32155455738787	5.57708792487774	5.30436341032124	5.18583730994521	0.019456837237946	0.956092353782243	0.989807313282509
Merged-chr7-45923083-4	chr7	45922587	45923587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1661.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	6.74605888316415	6.62185264480876	7.27593010838281	7.05479739837425	7.10431998340848	7.12872137979288	0.295246226763945	0.300938948533383	0.697653874358754
Merged-chr13-60666084-3	chr13	60665594	60666594	+	803.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	63883.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.18240064399503	4.2283818269313	4.87292486126089	4.15891520325161	3.70857444951024	4.45062169363115	-0.853614421755465	0.132844916954981	0.487694104062442
Merged-chr10-120847040-3	chr10	120846532	120847532	+	616.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	LTR41|LTR|ERVL	-10597.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	2.99561222365588	2.88443494607464	3.17309831128772	2.86716806755004	2.74181458392	3.07847021716546	-0.581913777207176	0.413409915474173	0.785010436140338
Merged-chr2-31765692-3	chr2	31765198	31766198	+	743.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	5525.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.59918010979411	5.69636292379352	6.03850506425661	5.6008287507026	5.38379096725791	5.63099817297919	-0.453932443827929	0.179200623645581	0.560729749259232
Merged-chr6-115555782-4	chr6	115555274	115556274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199033, intron 4 of 11)	intron (NM_199033, intron 4 of 11)	11070.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	5.16643311993217	5.07664272642485	4.55674926942211	4.38061747849088	4.44214609188393	4.82901724941715	-0.953190713931016	0.035032283918546	0.22970829966663
Merged-chr10-120365699-3	chr10	120365226	120366226	+	787.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-23797.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	5.00835007318927	4.99441606104797	4.63406685225653	4.6064240960227	4.52288743607933	5.00216014191089	-0.418647292414154	0.329410918977901	0.721370455053117
Merged-chr6-86660750-4	chr6	86660240	86661240	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	8419.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	5.14476288479732	4.97691765471139	5.27510509951242	5.35808601217135	5.49733585688264	5.36933874462089	0.574562006764085	0.101902797537269	0.425800000330024
Merged-chr7-92874393-6	chr7	92873822	92874822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-75.0	NM_001080995	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	8.5472496484752	8.43044704953336	8.18451622373597	8.44369598031096	8.37110344651921	8.05425165802422	-0.132728427352953	0.57094704248548	0.869288072801053
Merged-chr9-35113484-2	chr9	35112984	35113984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-3244.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.01273358732488	3.96809557270299	4.58137304558043	4.26591426690966	4.33236174629508	4.81854178729682	0.728639521182708	0.164233588659516	0.538525523372876
Merged-chr15-68257629-2	chr15	68257129	68258129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	1227.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.69322861615592	7.97859336915907	7.77499913885474	7.86778125291278	8.07707999386809	7.46276084590696	0.0205650464237922	0.937072450491869	0.986037792257163
Merged-chr5-66106140-4	chr5	66105624	66106624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7945.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.84330803569943	7.71184935484024	7.61384103872994	7.88032942127641	8.13015268809494	8.02012286877942	0.40865162216335	0.0679330713788769	0.341091902202124
Merged-chr2-167698118-4	chr2	167697602	167698602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110334)	TTS (NR_110334)	6925.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.11498319320902	6.90087303364779	6.89649380683568	6.93438607841122	7.37067528467694	6.92569572711282	0.194214221732212	0.47427061221681	0.821343873734808
Merged-chr13-41467316-4	chr13	41466814	41467814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20046.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	7.90440542994886	7.8472226465737	7.8746829793316	7.77706602003898	7.94116947410145	7.57510942018478	-0.134460919369757	0.553966513846903	0.862575362378324
Merged-chr13-43549497-4	chr13	43548913	43549913	+	926.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 5 of 8)	intron (NM_001081059, intron 5 of 8)	10778.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	7.4023321407866	7.58055730202673	7.16724578794741	7.236475209869	7.42482843674926	7.1481028223892	-0.178516547591198	0.479669754352483	0.824363039494411
Merged-chr14-73445677-4	chr14	73445194	73446194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60405.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.73645047084796	7.72931203999923	7.6276385272288	7.57020748882965	7.73098244059578	7.50793671027388	-0.128710979038151	0.56457271071103	0.86649388753746
Merged-chr10-127420793-4	chr10	127420307	127421307	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168293)	promoter-TSS (NM_001168293)	-60.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	6.70425356925963	6.41003366143249	6.30854793828078	6.60698286540604	6.61936013127536	6.55789200083294	0.164606263490622	0.550301608526603	0.860688638226379
Merged-chr8-69973146-2	chr8	69972646	69973646	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	1237.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	2.66171221514019	2.45936046730041	2.52714764028448	2.67987228679595	2.61704146010513	2.72839493664025	0.679591078381325	0.378021075850804	1
Merged-chr18-46600974-2	chr18	46600474	46601474	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	3270.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	3.57322548086079	3.43280770663621	3.42233926355965	3.49538630385319	3.74214049679924	3.65824922915159	0.563731011359048	0.325147963460526	0.717970213571373
Merged-chr8-25598948-4	chr8	25598430	25599430	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	5.01235236664048	5.03771446505389	5.01540118480034	5.32219575590906	5.53955929520037	5.49486510986215	0.879185921251561	0.0119344990719286	0.113827332210513
Merged-chr11-117712309-4	chr11	117711819	117712819	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	58030.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.1001150529883	4.04525834594638	4.13268845778372	4.09739992146646	4.27970241343413	4.33401924842931	0.416669146231176	0.375053890782354	0.758377211092613
Merged-chr15-89356573-4	chr15	89356070	89357070	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178919)	promoter-TSS (NM_178919)	851.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	6.87259625913789	7.00537266399347	7.08022725006615	7.16136741391403	7.62678289236312	7.39329117848061	0.641377887391023	0.0127510139254517	0.119316885996203
Merged-chr2-153338918-3	chr2	153338418	153339418	+	929.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6892.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	4.58113977656971	4.96668096877869	4.80504763447688	4.41408543947464	4.10864311976562	4.24103095223532	-1.35292811202057	0.00283662939829213	0.0403194839380068
Merged-chr13-55446909-2	chr13	55446409	55447409	+	955.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	1578.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	5.02295106262846	5.27943844862276	5.66309594549083	5.94375393745223	6.15792108820972	6.03299501034825	1.32091994819773	0.000151957532789076	0.00402037595812829
Merged-chr14-31183125-4	chr14	31182628	31183628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347583)	TTS (NM_001347583)	-14487.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.86700591008937	6.99891066409903	7.60385764050665	7.23394583202367	7.26758858355272	7.41806980682802	0.17434123947733	0.550453396376763	0.860709619458349
Merged-chr10-112138775-4	chr10	112138268	112139268	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A2|LTR|ERVK	-24853.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	5.0426062418086	4.87804871322714	4.65613600547254	5.18354451406564	5.26492233173175	4.81099768024631	0.501148238193511	0.217054044762044	0.610713588630176
Merged-chr7-16048919-3	chr7	16048439	16049439	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22906.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.91815793121462	8.2514698738717	7.82608775396298	7.40884321066373	7.90350194104129	7.58353730662839	-0.516575044762328	0.0487948898063346	0.280511620215938
Merged-chr19-5017029-4	chr19	5016529	5017529	+	944.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6977.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	3.1582351510498	3.17862328836782	3.17443782807675	3.10952812261844	2.87980990449124	3.07109354839515	-0.682148693338437	0.303362271958861	0.699902971652469
Merged-chr1-125439004-2	chr1	125438504	125439504	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3277.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.35874313104279	4.37801081397808	4.58586387672365	4.58725049976913	4.6892445546657	4.52947700293246	0.429185781939355	0.313537257834759	0.708121563861612
Merged-chr6-54679360-3	chr6	54678843	54679843	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-2281.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	6.22678581350841	6.01361893128277	5.94940593431165	4.07744351201851	3.78015006075664	4.38488556787712	-5.3820128287145	8.636747424936e-20	5.57090294367499e-17
Merged-chr11-50285987-2	chr11	50285487	50286487	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	6349.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	6.80369796699831	6.90096223797079	7.04850456857922	6.84998114665055	7.15405620904318	7.01545203664264	0.154987762584134	0.542995467065823	0.857468369859798
Merged-chr15-79343015-4	chr15	79342530	79343530	+	922.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3591.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	3.53986290187081	3.42559664112995	3.38406161269541	3.88561422957833	3.74581518405838	3.51745372805001	0.967401620651512	0.0951407816344002	0.411148363215922
Merged-chr12-36029500-4	chr12	36029039	36030039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	12939.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	7.34319462959784	7.40662444955881	7.00743444844206	6.53600833638543	6.44852401290123	6.34646608611668	-1.27294230707255	1.54971594691751e-06	7.94508715410425e-05
Merged-chr11-47439560-3	chr11	47439038	47440038	+	758.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60236.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	2.83091458785922	3.03954759409318	2.90636658873504	2.96430822370523	2.68051822255659	3.03859486923706	-0.153022349541702	0.83277066441191	0.960757500748132
Merged-chr19-3902625-2	chr19	3902184	3903184	+	716.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_016921, exon 8 of 20)	exon (NM_016921, exon 8 of 20)	2546.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	3.06789908428416	3.28540242549478	3.47606160944403	3.36558776689047	3.11332791234762	3.33342821762717	-0.0388521623255095	0.952051533219128	0.989045247635785
Merged-chr12-33017009-4	chr12	33016492	33017492	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	62806.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	3.08922445219098	3.20909188610881	3.01537174046239	2.98246280403176	2.86930961981809	3.08805162240143	-0.615000636789314	0.362763536652561	0.748279044046365
Merged-chr8-106820756-3	chr8	106820249	106821249	+	941.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 17 of 17)	B3A|SINE|B2	-49493.0	NM_008217	15118.0	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	2.91557186602809	2.96273670533042	3.13240102193703	3.95645361626338	3.65351293735729	3.51195483411269	3.23264679557851	8.72752285820517e-06	0.000355457524221995
Merged-chr9-99184121-2	chr9	99183621	99184621	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-43910.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	6.2551853982217	5.78377833304081	6.11271099510491	6.4046192308732	6.35333698532912	6.46585819448125	0.571631486066626	0.0563609641163846	0.306042785061209
Merged-chr16-96128021-4	chr16	96127480	96128480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008251)	promoter-TSS (NM_008251)	-255.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	7.38458434059119	7.25407967327125	6.86176632540712	6.98714763182904	6.65438125790144	6.44820957754648	-0.720576180206118	0.0141811898102026	0.127953637142414
Merged-chr17-13867130-4	chr17	13866644	13867644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-81229.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	6.96162879001519	7.23082136242387	6.76510442844785	6.60478454104151	6.81502742401486	6.86930893447574	-0.374322236870896	0.168164386549358	0.54458715170853
Merged-chr11-114725197-4	chr11	114724682	114725682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2230.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	3.51362506562207	3.14680520975663	3.31199180090285	3.32122596603203	3.16192876134249	3.14781979457684	-0.492157108663887	0.443936601763558	0.803884349333946
Merged-chr13-114954697-4	chr13	114954208	114955208	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22608.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	2.2423782206761	2.13756264507359	2.44327717824434	2.21374447320035	2.03645024979167	2.26451164154638	-0.739760962771577	0.412085400844703	1
Merged-chr6-47175019-4	chr6	47174560	47175560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-69336.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	5.86879610698588	5.8310199691452	5.76843551800053	5.11450884348893	4.93386613462263	4.87872628787574	-1.65863006583834	1.68604315438351e-06	8.54398774603793e-05
Merged-chr9-109082454-4	chr9	109081942	109082942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	-54.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	6.71748980864341	6.82539031454555	6.73995378740516	6.77153178355819	6.82343288079596	6.7356721648447	0.0266046988649121	0.914655612425884	0.980912729144991
Merged-chr4-45517225-1	chr4	45516725	45517725	+	557.0	f1_balb.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	13603.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.59778337157303	2.36688306845111	2.39262763952189	2.46069866199725	2.32785263633244	2.59566167554391	0.0179868479031194	0.982616553147887	1
Merged-chr14-70778205-4	chr14	70777664	70778664	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010071, exon 5 of 5)	3' UTR (NM_010071, exon 5 of 5)	3783.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	5.73001114743209	5.74128154474923	6.28510855065706	5.19208343194404	5.41685448491271	5.93956862746149	-0.710772753698308	0.0685826185183846	0.342534365046684
Merged-chr2-119288636-4	chr2	119288144	119289144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172269)	promoter-TSS (NM_172269)	-98.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	8.61818703352017	8.95346993405513	8.41692338423954	8.52545679150706	9.20977245992815	8.47214463732681	0.143085911427787	0.620186462344852	0.890026802452616
Merged-chr10-20772243-4	chr10	20771709	20772709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47131.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.66962641905505	7.79286626731935	7.3845817364449	7.93495007707772	8.43488195257044	7.68260234972328	0.619492046467425	0.0294555088751175	0.206429207654408
Merged-chr8-48011874-3	chr8	48011374	48012374	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-21323.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	3.56452889534612	3.85831611322598	3.76815139721921	3.57089500853724	3.50433669866737	3.68572165775173	-0.531897696058409	0.341384032287074	0.730816878642537
Merged-chr18-46520693-2	chr18	46520193	46521193	+	760.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	Lx6|LINE|L1	5278.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	4.05359425802476	3.81773560815364	4.141369587735	4.16375319108914	4.02565808999346	3.69857242877657	-0.0674225150642372	0.89947368157841	0.976646126949534
Merged-chr11-115613473-4	chr11	115613025	115614025	+	947.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243584)	promoter-TSS (NM_001243584)	-556.0	NM_001243587	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	5.58836480880668	5.36688756307841	5.68333810252737	6.11292390163168	5.95551720347983	5.96767840765107	0.848588107948991	0.00688719386772685	0.0772018897138374
Merged-chr5-134227994-8	chr5	134227490	134228490	+	930.5520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 2 of 10)	B1F1|SINE|Alu	1635.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	5.96187978121	5.71153529209983	5.55831503206379	6.06068606683253	5.86062580194152	5.70705587301659	0.224488142647142	0.492664870873648	0.831177181177099
Merged-chr14-25861101-2	chr14	25860601	25861601	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	18946.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	4.64946362378214	4.6491119845405	4.24008842934731	4.16409617022087	4.23048480984951	3.99991735180662	-1.03652263629111	0.0312110301531748	0.213939154542002
Merged-chr4-136056192-4	chr4	136055685	136056685	+	835.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-2814.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	2.96911262867331	2.6282145242561	2.63821500525468	2.83030841887106	2.55387365120077	2.84032783020859	-0.0666386975196919	0.93202887912609	0.985035285260106
Merged-chr15-96285140-2	chr15	96284640	96285640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2382.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	8.4290804593028	8.39575980265325	8.02296602586163	8.19966319766758	8.15289716403392	8.27704062165733	-0.130913283897746	0.562584678976614	0.865745518569294
Merged-chr17-53566911-4	chr17	53566411	53567411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020005)	promoter-TSS (NM_020005)	-60.0	NM_020005	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	6.81785884602036	6.42838445579813	6.44971709776103	6.86643830015627	6.63770768502993	6.91116760971017	0.347152583953053	0.216319251326839	0.609736247697899
Merged-chr2-71814199-4	chr2	71813691	71814691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	27252.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	2.64450211927877	2.74297495491751	2.40176763053375	2.69511926209249	2.49689402830576	2.80299905757677	0.334197780642893	0.685617810412801	1
Merged-chr4-63389482-3	chr4	63388983	63389983	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8757.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	6.32590788756083	6.05375967011875	6.10688466041926	6.41869147856768	6.39407143264389	6.29469777656589	0.336317861462005	0.232849263400968	0.629144800695771
Merged-chr8-11463078-2	chr8	11462578	11463578	+	790.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B1_Mus1|SINE|Alu	-14851.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.49873639542617	8.83186875637592	8.62199136037407	8.47877067847616	8.68142603852715	8.29630200135983	-0.220015590255582	0.336178456713446	0.726227341393994
Merged-chr2-132266333-4	chr2	132265843	132266843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	3195.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	6.37881776978964	6.65161131614307	6.5189249040887	6.55823254211239	6.80109670341218	6.86137120372897	0.352644469840627	0.193239665839597	0.580409562689281
Merged-chr9-40391599-3	chr9	40391118	40392118	+	661.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-15201.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.53291357743976	3.74872004280708	4.06651673804373	3.63933070490631	3.61770243405	3.60687711846603	-0.570325569854117	0.318336347141722	0.71214224419864
Merged-chr3-105879503-1	chr3	105879003	105880003	+	639.0	f1_balb.idr	intron (NM_027025, intron 1 of 6)	RMER10B|LTR|ERVL	8645.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	4.29707105233721	4.28593380253826	4.97366399209165	4.65236349169748	4.64934536472819	4.65389744970694	0.251372915763009	0.595184941345811	0.879394612218161
Merged-chr1-10037421-2	chr1	10036939	10037939	+	914.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	720.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	5.8841492750111	6.41495132476024	6.14828135179603	6.28889169657848	6.43468291509085	6.38898056215296	0.334098400084758	0.272167491166539	0.66953956602346
Merged-chr7-145284015-4	chr7	145283528	145284528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-17.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	8.53813384404578	8.40878629451587	8.26009929052398	8.52077997645724	8.47366028372893	7.92857164870784	-0.0945497235667871	0.707139080892694	0.923220759150193
Merged-chr9-120069840-2	chr9	120069340	120070340	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	3.70948916537682	3.39522696573972	3.437588691856	3.2247498180252	3.22617896945043	3.15507606806956	-1.27225150477174	0.0438176095031566	0.263229797388164
Merged-chr1-120033251-4	chr1	120032757	120033757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	26277.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	3.47038640429057	3.28510246491038	3.47351673986783	4.06752764232816	4.02654550418833	3.92514832567336	2.10159938752071	0.000229610764876682	0.00560277200113166
Merged-chr1-177681396-4	chr1	177680901	177681901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38458.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	3.02438419395184	2.91313991237254	3.14002521747369	3.25142914456346	3.02945017437531	3.37625353666369	0.857457858903392	0.199516338867148	0.588054108053474
Merged-chr1-185203300-4	chr1	185202813	185203813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-855.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	7.08699071254541	7.58281378225301	7.11447509496269	7.86074923554496	8.3344166885083	7.79081948151407	1.06259973696103	0.000187605171119856	0.00474619978064487
Merged-chr14-60912030-4	chr14	60911535	60912535	+	835.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125952.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.42188254999028	3.3628139427914	3.49290991689317	3.4937259058641	3.31840495402316	3.90323784265319	0.581746838827754	0.3432697107299	0.732153852414989
Merged-chr8-90878261-2	chr8	90877761	90878761	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	(TAAA)n|Simple_repeat|Simple_repeat	49426.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.26741875922195	6.24753034061077	6.28412491071747	6.1834753640257	6.16404543620984	5.78743584259654	-0.328978648459743	0.266578849307165	0.664166899200562
Merged-chr10-30408888-4	chr10	30408387	30409387	+	899.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191813.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	2.73432432103748	2.65684390661377	2.92812176752196	2.72195172557289	2.42513345248017	2.50553370301951	-1.2316959958639	0.126824658094384	1
Merged-chr3-121841663-4	chr3	121841139	121842139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26337.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	6.1236647182532	5.47558934439569	5.81019511481024	6.57171925850638	6.20326682932512	6.09181757554824	0.810363300598119	0.0196560241591624	0.159549161860851
Merged-chr16-24860496-4	chr16	24860005	24861005	+	937.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138650.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.3563156016025	5.29972423576787	5.03415939474917	5.10377931030822	4.97239359700018	5.06352611784654	-0.421553905132728	0.248858572184773	0.645843447218383
Merged-chr1-183668041-3	chr1	183667555	183668555	+	746.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80922.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.00169587971263	3.0706183295691	3.42752146465449	3.45576669181238	3.54991232862488	3.55075356313761	1.41082874444587	0.0290162267280185	0.204504675045313
Merged-chr11-100527998-4	chr11	100527489	100528489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199296)	promoter-TSS (NM_001199296)	11.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	6.1123695476991	6.24068598399482	6.46666831460418	6.1138422670578	6.22555419210664	6.34730292929844	-0.0734586180920538	0.799475894101733	0.952248176414355
Merged-chr2-153240287-2	chr2	153239787	153240787	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	1071.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	7.31755832835859	7.38218619201413	7.29711938114071	7.39766693249188	7.60436172361308	7.16003180824276	0.113230533326108	0.645712411252669	0.900713119905989
Merged-chr15-3221574-1	chr15	3221074	3222074	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-49193.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	2.91116542931392	2.83582478070033	3.19325370569296	3.20854725297179	3.12185659855629	3.42426389058235	1.20237871483868	0.0800752376068221	0.374320245549913
Merged-chr16-22657077-4	chr16	22656571	22657571	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138650, exon 1 of 25)	5' UTR (NM_138650, exon 1 of 25)	160.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	4.31292520784068	4.30653983973954	4.19939102864492	4.49637780122694	4.50313307211714	4.17031822177793	0.342495602414926	0.454992613093606	0.810667376538136
Merged-chr19-29496966-4	chr19	29496519	29497519	+	786.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	24968.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.16225562850631	6.15072730988471	6.28101379307499	6.54183644847503	6.2927943381604	5.98791073097551	0.179082770981777	0.551797723271211	0.861486924293384
Merged-chr2-31052631-4	chr2	31052131	31053131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019406)	TTS (NM_019406)	43869.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.77883516411176	6.42109852986308	6.48480606084935	6.32589957095369	6.16748554294248	6.31866304716299	-0.501011078296333	0.0761556646012323	0.363264221999761
Merged-chr17-34109219-1	chr17	34108719	34109719	+	607.0	f1_balb.idr	Intergenic	Intergenic	10681.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	2.64536433097703	2.6795997662055	3.05310233514918	2.65311109356653	3.00224333698599	2.83652833820717	0.200540777877422	0.794824196499656	0.950895483060537
Merged-chr9-62844982-3	chr9	62844483	62845483	+	765.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033175, intron 2 of 6)	intron (NM_001033175, intron 2 of 6)	6196.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	3.49063721214143	3.74546552702171	3.74637223686892	3.69314471279991	4.08016609152368	4.27188993419374	1.1580980320693	0.0400364581670155	0.249115776331759
Merged-chr6-29542411-2	chr6	29541911	29542911	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311083)	TTS (NM_001311083)	13129.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	3.10734613342224	2.99492976009653	3.31154531188012	3.16787368139852	2.75942429089517	3.0455092181838	-0.630809949570919	0.37437854008102	0.758058822552447
Merged-chr2-16170586-4	chr2	16170076	16171076	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-185728.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.20945344985621	4.22019045646168	3.90577521431436	4.23006619349876	4.18098502780265	4.03008525553038	0.0696853205036614	0.887066563717585	0.973818520404627
Merged-chr13-111798184-4	chr13	111797717	111798717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10776.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.2986729634684	6.18061896565611	5.72415577959475	6.20949646030457	6.06785345453965	6.09166025167798	0.0315351907736727	0.920408966584285	0.982360480259154
Merged-chr11-29887431-2	chr11	29886931	29887931	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	L1_Mus2|LINE|L1	-61763.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.65420164711492	3.42055772540447	3.96663786073047	3.44782785680934	3.55187947110762	3.99011695167108	-0.0502089984125757	0.934806039077695	0.985727536128156
Merged-chr13-12906571-2	chr13	12906071	12907071	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98759.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	2.90614699521203	3.01388621153183	2.95976479405781	3.03156987711794	3.17759576139179	3.20620202847304	0.818049536731536	0.219102384829945	0.613224645184221
Merged-chr12-113154182-4	chr12	113153695	113154695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007763)	TTS (NM_007763)	2183.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	5.69759627654769	5.55540785724787	5.73358401416766	5.5594904501193	5.31315515163424	5.55719796793165	-0.353617899742766	0.282666049333395	0.680597768538116
Merged-chr9-21309221-3	chr9	21308759	21309759	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 3 of 10)	intron (NM_001110300, intron 3 of 10)	3074.0	NM_001110300	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	2.13565397007325	2.13683761590052	2.43315361470964	2.0893599701995	1.85110063404984	2.19175402158382	-1.448853981313	0.155360661535415	1
Merged-chr2-150914364-3	chr2	150913886	150914886	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 2 of 6)	intron (NM_027014, intron 2 of 6)	4792.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	5.31803660182223	5.35982686442642	5.43767758172599	5.8509335836915	5.93565557328439	5.56117179024232	0.814116687359068	0.0132842611388306	0.122450072099237
Merged-chr3-14912888-2	chr3	14912388	14913388	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	26600.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	5.8236089063895	5.85406778894548	5.68144774330536	5.45108391181771	5.8373422476026	5.35260478766001	-0.384896215880285	0.262140058191424	0.660009964678367
Merged-chr15-81072978-2	chr15	81072478	81073478	+	658.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3|SINE|B2	32069.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.18692994404258	3.2719008301908	3.11964690799466	2.93537519083325	3.06286366389231	3.0111576231557	-0.852734957312407	0.199177915489786	0.587556138266179
Merged-chr10-128272632-1	chr10	128272132	128273132	+	570.0	f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	Lx5c|LINE|L1	2134.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	3.77749515444746	3.93737769419994	3.98779694970814	4.13479194602504	4.08672319210669	4.23955312370306	0.742022901471805	0.131851759371411	0.485601831465615
Merged-chr5-142922697-2	chr5	142922197	142923197	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-15943.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	2.44444840649266	2.53063375621326	2.59372673635042	2.4211900537398	2.27233342295944	2.54344546523083	-0.692857275397424	0.398565504268567	1
Merged-chr12-111443324-2	chr12	111442824	111443824	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	663.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	9.0347839641556	8.91014611911751	8.53755594385772	8.8155080274932	9.06002553724503	8.46154946544558	-0.0552601930515788	0.830245341058435	0.960219727001139
Merged-chr17-43036306-4	chr17	43035827	43036827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	19772.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.55921463558068	6.34477966935028	6.48800387199328	6.79178119882874	6.5813279825411	6.54743858078645	0.289097789817782	0.281511907377766	0.67967073158435
Merged-chr17-56717762-4	chr17	56717256	56718256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-6.0	NM_027244	69875.0	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	6.14397531496687	6.08724122882545	6.49092354522683	6.30832916990902	6.50867864715983	6.31334147926484	0.240156363251222	0.411141236437272	0.783865453829309
Merged-chr6-40818664-3	chr6	40818171	40819171	+	906.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68823.0	NM_139296	194357.0	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	2.83570825188161	2.72805206764495	3.00932544301756	3.08674286832029	3.03007071864384	3.0816974323881	1.00632251735043	0.147487288784131	0.512363156527639
Merged-chr9-35045145-2	chr9	35044645	35045645	+	721.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71583.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.41938992171189	2.56040406656179	2.69121318971762	2.56218961678631	2.41970990128836	2.82277157476173	0.273084528059831	0.734711797695268	1
Merged-chr8-124863094-4	chr8	124862581	124863581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025615)	promoter-TSS (NM_025615)	48.0	NM_010322	14712.0	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	8.32972172946889	8.80334830103578	8.25786550044874	8.13800503672086	8.13060312998524	8.05298367546768	-0.538117519343943	0.0271771209991969	0.196315121460299
Merged-chr5-150598988-4	chr5	150598488	150599488	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362416)	TTS (NM_001362416)	-4463.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	7.87780889001627	8.03037721239574	7.76964755054965	8.14586305050538	8.42425826530151	7.79043666266634	0.360894260975204	0.158531761025383	0.53032936746213
Merged-chr4-119108984-8	chr4	119108523	119109523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	CpG	278.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	6.20514004376236	6.5583141251433	6.4152610222883	6.92615586569473	6.81708908329169	6.6856959352654	0.658340665440871	0.0160065299633976	0.138920632368282
Merged-chr11-69586074-4	chr11	69585550	69586550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	5691.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	5.43071852944299	5.25374506439895	5.44722116056418	5.42610106259071	5.46456637824734	5.1933141226865	0.00137447711699125	0.996825894111662	0.999227652723149
Merged-chr9-108694280-4	chr9	108693814	108694814	+	940.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	L1M4|LINE|L1	2171.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	4.28932910445988	4.48808319316327	4.09265834604139	4.54137280706785	4.38950361190168	4.61309038767203	0.513656852514329	0.265665902550472	0.66343122507262
Merged-chr19-47067673-4	chr19	47067145	47068145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177342)	promoter-TSS (NM_177342)	-103.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	6.81120037861651	6.90291046539268	6.90422252110623	7.03713512213111	6.96784931061332	6.73483132129089	0.0839463412676594	0.738458263430525	0.934032187674406
Merged-chr14-50785524-4	chr14	50785003	50786003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177625)	promoter-TSS (NM_177625)	17.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	5.27921041631407	5.49928747825816	5.39873087830074	5.28933000562069	5.46520855044863	5.06019745477864	-0.196106225915952	0.584937734823785	0.874773073549443
Merged-chr16-91373590-1	chr16	91373090	91374090	+	741.333313	f0_balb.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	807.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.24810225181372	8.04293436092892	8.28590210119258	8.27275300350134	8.25643171166016	8.07855065297527	0.0210209988756811	0.922538176971057	0.982621045978137
Merged-chr9-48492098-4	chr9	48491593	48492593	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	3237.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	5.20981602985576	5.17813883771313	5.28947720853603	4.95630113526545	4.95559307315818	5.19765417509086	-0.39952660847596	0.270136566836824	0.667139350599521
Merged-chr2-34771256-3	chr2	34770815	34771815	+	998.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-775.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	8.70339694260995	8.76555638495662	8.27255358816879	8.64474188200195	9.15711528075488	8.49328308554859	0.277088738045137	0.30884313130701	0.70476767553933
Merged-chr5-107967056-4	chr5	107966548	107967548	+	865.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20029.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.81971071733276	6.19183809060952	5.78401023582256	5.75276219613938	5.94628128866042	5.76692295612916	-0.217953896371755	0.498080351616147	0.833856267944725
Merged-chr3-96102216-4	chr3	96101740	96102740	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	3.18268881610164	3.3955225733943	3.32359150196105	3.51618177804722	3.5866731817352	3.56176966260249	0.956889763096907	0.108017516843803	0.438994080388235
Merged-chr17-56762898-2	chr17	56762398	56763398	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1853.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	3.91815087346497	3.63426045784689	4.10573612854889	4.11297471687185	4.01508684222062	4.17338010727233	0.619775390837369	0.233746348737539	0.630067905852251
Merged-chr5-100639134-4	chr5	100638624	100639624	+	993.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35132.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.54858999073922	5.26909667700936	5.87707652943264	5.97009132101541	5.76863095618157	5.86808590796956	0.538171410405083	0.117621540771325	0.457847940554791
Merged-chr3-97230776-2	chr3	97230276	97231276	+	775.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3412.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.0155873445574	5.20670336907604	5.38165115464349	5.57728958952274	5.62526100969029	5.32118206671859	0.635546864296555	0.072609191963937	0.354018766695052
Merged-chr7-19662684-2	chr7	19662184	19663184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019649, intron 1 of 13)	intron (NM_019649, intron 1 of 13)	2346.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	2.02981340423887	2.00726856243881	2.12423671500549	2.20154065000063	2.2174006696091	2.33036341717592	1.50073271749996	0.0987929890179208	1
Merged-chr3-61413410-4	chr3	61412878	61413878	+	817.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48871.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.72616853858595	6.59431615789261	6.58509020853381	6.96335463458824	7.25277183137168	6.64458278100145	0.546338260900875	0.0530618963078918	0.295199448710188
Merged-chr19-37963106-4	chr19	37962586	37963586	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	L1MB3|LINE|L1	80491.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.77479888164482	6.80677886060182	6.63337271682621	6.93172983657553	7.18032207714587	7.17471787030588	0.544638793956454	0.030760995992453	0.212145746406585
Merged-chr16-15985025-3	chr16	15984520	15985520	+	789.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97734.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	4.37232556200575	4.20177700984922	4.50680788012027	4.02047401858197	4.48985974783958	4.79131240126483	0.266502905102338	0.594904203949639	0.87924603206665
Merged-chr5-64093501-3	chr5	64093037	64094037	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025700, intron 1 of 13)	intron (NM_025700, intron 1 of 13)	598.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	5.62897703983298	5.78430694624999	5.30222584035456	5.69398885925633	5.28829846474217	5.69247815653829	-0.0660455072595753	0.854666736704799	0.965987623019113
Merged-chr7-67458879-2	chr7	67458379	67459379	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86021.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.83458003904844	6.162869795996	6.41412998005427	6.10693742569901	6.0383508052868	6.43887287232589	0.0806695846239911	0.803506110710922	0.953504424667369
Merged-chr11-47020177-3	chr11	47019675	47020675	+	920.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	209376.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.6453801124202	3.91210297401484	3.77721127065332	3.77385360814941	3.62120293351983	3.69042621619765	-0.298656415920845	0.581221383282735	0.873246537431079
Merged-chr7-98671147-2	chr7	98670647	98671647	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14578.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	5.49145367840622	5.70369074921729	5.83908149787057	5.28433427033101	4.99767214080306	5.68666067603571	-0.654430699976011	0.0835497100771849	0.382608930990776
Merged-chr12-59220782-2	chr12	59220282	59221282	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1299.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	4.75412159923215	4.70853720329748	4.75984450330994	4.72268495778651	4.722598092919	5.13256198017022	0.275832072501522	0.498927102662583	0.834165925487441
Merged-chr4-133109388-4	chr4	133108862	133109862	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21271.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.22323650425408	5.15630207499978	5.3431106478089	4.01414185293297	3.61878285033299	4.08531286547962	-3.77497996820917	2.11978519752034e-12	3.8427687737532e-10
Merged-chr8-40584820-4	chr8	40584327	40585327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	49965.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	4.35665572611272	3.8026981127157	4.14714308754406	4.74243426631795	4.9560829644947	4.00142714095736	1.28564106941689	0.0232931862766731	0.178601128244509
Merged-chr13-81691801-4	chr13	81691308	81692308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081176, intron 3 of 7)	intron (NM_001081176, intron 3 of 7)	19205.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	4.01201372681621	4.18613776419842	4.02809024049279	3.60408211041974	3.73752395645336	3.74427844385895	-1.21430489313503	0.0207424429958536	0.165398868883468
Merged-chr6-31453766-3	chr6	31453300	31454300	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	RSINE1|SINE|B4	54972.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	4.64989650535563	4.59080803595063	4.6625965837855	4.73506510105496	4.65284718639618	4.5645350879388	0.0548827608632378	0.892691488267439	0.975146620821922
Merged-chr15-100468324-2	chr15	100467824	100468824	+	792.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	-687.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	5.1430298811277	5.20308149526076	5.20213117244943	5.18211432683758	4.93256008223465	4.83480199332532	-0.392718885707296	0.29142768352704	0.689051906425265
Merged-chr5-5186291-4	chr5	5185818	5186818	+	994.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	79750.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.68671475091717	5.89487824380624	5.74862521986336	5.84958399405837	5.80441441286321	5.83586584276132	0.0827576777617133	0.786208452237959	0.948394331310521
Merged-chr17-21450355-4	chr17	21449856	21450856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-18.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	6.93430801609706	7.38034284257853	7.03346537150954	7.32265240043523	7.411052201508	6.93505050164331	0.167877723914608	0.546246073925855	0.858590111436446
Merged-chr3-96568689-3	chr3	96568156	96569156	+	907.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B2|LTR|ERVK	-1855.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.88094900846757	4.92587825492615	5.09700469869799	4.9649300561087	4.84167534147672	5.34134344028871	0.189089181450014	0.632746394256958	0.895674900026078
Merged-chr3-115694314-4	chr3	115693826	115694826	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20729.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.18212851452168	4.31693667029617	4.71579849853669	4.16809788748174	3.87317901308156	4.09393054221459	-1.01627733440509	0.043645970214361	0.262538414631429
Merged-chr14-55540275-4	chr14	55539773	55540773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028994)	promoter-TSS (NM_028994)	7.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	5.29314999392885	5.53054686109145	5.44648472707242	5.37468710885553	5.49737493014519	5.38946635605652	-0.00225027018576417	0.994670393932696	0.998961028701257
Merged-chr8-79377044-2	chr8	79376544	79377544	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	RSINE1|SINE|B4	22424.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	2.82823003964391	2.71666841826256	3.17670004413151	3.00315835943125	2.82560749022215	3.19386262296494	0.444184393447395	0.545140115343529	0.858019423019685
Merged-chr11-52368454-3	chr11	52367971	52368971	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	7609.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	3.42587343235863	3.55518681709222	3.38645559693036	3.70078799256495	3.76435314616219	3.68267965704282	0.903470243726839	0.110084036387914	0.443363350300229
Merged-chr5-102047511-2	chr5	102047011	102048011	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	B2_Mm2|SINE|B2	22410.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.55893751313533	5.75027102940671	5.39268641242063	5.86636096063776	5.96508219356459	5.90202135421817	0.589664387083468	0.0650106786886364	0.332517536530301
Merged-chr1-160157523-3	chr1	160157123	160158123	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4048.0	NM_177839	329278.0	Mm.90140	NM_177839	ENSMUSG00000026725	Tnn	TN-W|Tnw|tenascin-W	tenascin N	protein-coding	2.83297891999023	2.95278211032206	2.93767043402162	2.42755306473036	2.35945285900604	2.51110364182594	-3.34468820527106	0.000488984340493752	0.0103241332158853
Merged-chr8-71540900-2	chr8	71540400	71541400	+	606.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	-2030.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	3.6875290949162	3.52209300311384	3.70503600208942	3.58603646214075	3.37436881340714	3.56677065841724	-0.468602349315603	0.411244658980833	0.783877099438722
Merged-chr4-142081924-4	chr4	142081406	142082406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-2392.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	7.59686033375532	7.68623846520649	7.48395900011714	7.78192862195906	7.97836833537227	7.59157174538263	0.297280909461401	0.207829010882316	0.59868364609575
Merged-chr1-155531095-2	chr1	155530595	155531595	+	803.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR101_Mam|LTR|ERVL	-3984.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	3.5725263342032	3.34799661169008	3.58799017941395	3.57096012271288	3.57939924771303	3.6579583850815	0.350317305928931	0.538323658647496	0.855080856348593
Merged-chr1-123934135-2	chr1	123933635	123934635	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111424.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	6.720310155441	6.62617640766763	6.79591991435409	6.64915611528086	6.93404550138498	6.82471863899742	0.157045213382776	0.543633432454501	0.857551302506722
Merged-chr10-20507276-4	chr10	20506772	20507772	+	931.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	41056.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.0936637260691	4.53766812960238	4.30425927002358	3.94708202978011	3.90260696097533	4.14744894278469	-0.940282500426275	0.0591495324338888	0.314914715685166
Merged-chr2-174329191-5	chr2	174328687	174329687	+	994.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-883.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.73359916428009	5.41014747724756	5.82349421885622	5.88693912744761	5.72674227075513	5.93152344489137	0.338430961335839	0.299995255521765	0.696717796735933
Merged-chr14-10209220-4	chr14	10208723	10209723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	MTD|LTR|ERVL-MaLR	244235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	3.7182013161371	3.79355270041719	3.58538248069185	3.6189811592788	3.45504465319714	3.54564041536678	-0.59008631066174	0.291952015776549	0.689235268138963
Merged-chr10-5825038-4	chr10	5824538	5825538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019958)	TTS (NM_019958)	-1095.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	5.09618788568821	5.16955747903138	5.49515572529841	5.35554521196137	5.58585074482668	5.11986194012338	0.251399082980637	0.502395843799851	0.836485922295083
Merged-chr10-89695543-3	chr10	89695105	89696105	+	836.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	9242.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	3.6848916603488	3.97363397501825	3.67504139556487	3.391035441184	2.9785559248312	3.47482514989548	-1.89878911877518	0.00496085236442638	0.0609003546089097
Merged-chr4-128884122-3	chr4	128883613	128884613	+	686.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-27.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	3.92727281536299	4.0831598132572	3.83892905989519	3.59627643057764	3.33340026574296	4.13954495669039	-0.708093557384208	0.253705297695882	0.651117231535132
Merged-chr8-41373932-4	chr8	41373442	41374442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	755.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	7.43503117967074	7.44360542988295	7.50438123025466	7.76401267470748	7.93607967927026	7.48932384989777	0.424574993428213	0.0754732290979604	0.36172895840004
Merged-chr6-115380240-2	chr6	115379740	115380740	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	RLTR20A4|LTR|ERVK	17891.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.72476249926515	6.09868561370235	5.66976212362185	5.91264062667637	6.30229791638208	6.18969139566377	0.505342710379695	0.121973575958579	0.4671659074763
Merged-chr5-62846921-4	chr5	62846436	62847436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33113.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	7.42179117790461	7.39630657048129	7.07844987957796	7.11781762518084	7.18546343672763	7.12322118407661	-0.257742552534003	0.290744470032758	0.688551753592876
Merged-chr3-152463615-3	chr3	152463116	152464116	+	995.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001346655)	TTS (NM_001346655)	66932.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	2.83737321165317	2.91670664999465	2.83728112524041	2.50899581300644	2.77929805212505	2.65986059778738	-1.09569585060405	0.158747169939411	1
Merged-chr19-9837134-4	chr19	9836633	9837633	+	963.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	62400.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	2.55044855986747	2.44333014988589	2.69322635157032	2.40723422449561	2.33755517646906	2.64649399159326	-0.588126139453532	0.471543851125869	1
Merged-chr7-110613784-4	chr7	110613259	110614259	+	795.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	1161.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	6.87391867069997	6.87484270408842	6.93408568334236	6.78986053624735	7.13767644742219	6.78631813999972	0.0517942361664351	0.842202177873213	0.963002495523594
Merged-chr12-80110418-2	chr12	80109918	80110918	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	2595.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.93102116504588	4.26871993658424	4.7191177695464	4.46405159919772	4.37536373910629	4.54868027291276	-0.508850774937651	0.273236059262043	0.670483530009026
Merged-chr10-19693052-8	chr10	19692506	19693506	+	964.3312380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19581.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	6.8040322296178	6.79648952080165	6.9700370904	6.84804168234188	6.87339691920823	6.83134342327343	-0.00154220387446019	0.995004984056421	0.998961028701257
Merged-chr3-97228843-4	chr3	97228338	97229338	+	809.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1474.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.21723101021393	5.22177975356499	5.79622513765741	5.85453085536596	5.97301817118624	5.80932546465571	0.853117476206154	0.0156093004226892	0.136473538885271
Merged-chr2-32646556-1	chr2	32646056	32647056	+	696.0	f0_balb.idr	promoter-TSS (NM_007932)	promoter-TSS (NM_007932)	-39.0	NM_007932	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	3.64248650895311	3.9885383194601	3.96553855246855	3.54013386828648	3.47824115903739	3.79591822976618	-0.904212644593132	0.110229542720198	0.44355436116098
Merged-chr12-79132339-4	chr12	79131848	79132848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	1560.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	7.42289982902982	7.37686577656356	7.06087977888331	5.7939466845994	5.90309879972708	5.97364542163187	-2.2693691966232	2.44051491700472e-16	8.67822073564652e-14
Merged-chr15-38653157-4	chr15	38652687	38653687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8717.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.84282927780069	4.80395935296674	4.92471598294286	4.76003618646717	4.49541235174329	4.80937097543128	-0.391810317536902	0.332331864455242	0.723521765316285
Merged-chr9-96362177-2	chr9	96361677	96362677	+	856.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	1538.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.79966033318613	3.3977414415898	3.76036794887643	4.27361971805954	4.33404929432559	4.04098040928611	1.75523185299921	0.00151535117168248	0.024897794364519
Merged-chr13-100398796-4	chr13	100398296	100399296	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	54068.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	2.74830811276965	2.73511848610216	2.78169601997434	2.71215282500725	2.73382007004518	2.85413250187479	0.0573735103063488	0.936320085337962	0.986037792257163
Merged-chr8-35495048-4	chr8	35494517	35495517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026067, intron 1 of 6)	CpG	516.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	7.41374739258839	7.46904206834453	7.48659063376165	7.4843010607926	7.70702374326445	7.51334243346087	0.177808484894967	0.433256136062822	0.797768850151924
Merged-chr8-105565523-4	chr8	105565009	105566009	+	982.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	555.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	8.91959633535591	9.24020232372919	8.67074352590647	8.85879253303648	9.2401665720192	8.61723707569701	-0.0434721218522015	0.87021694393777	0.970058028390413
Merged-chr10-28463939-3	chr10	28463441	28464441	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-204419.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	2.26582300205456	2.15729881206939	2.65480702032612	1.97199064287152	2.08474501040304	2.10432770847538	-2.38782918378031	0.020110188450684	1
Merged-chr5-30924156-3	chr5	30923632	30924632	+	826.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310524, intron 1 of 8)	intron (NM_001310524, intron 1 of 8)	2573.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	3.84479731837476	4.02600862876301	4.27668524011364	3.95424368416619	4.249849400039	3.64676249153401	-0.209388831301146	0.711679044050964	0.92478339732604
Merged-chr5-105693483-2	chr5	105692983	105693983	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6486.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.16079753150707	4.04004356418855	3.80792822208353	3.8790832201537	4.03032499634011	4.03160938844602	-0.110361066647522	0.828459754699427	0.959782789204433
Merged-chr4-46487521-4	chr4	46487014	46488014	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1815.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	4.10553449053636	4.00343435003857	4.21743383116688	3.82499950409593	3.82617949607685	4.19829813113967	-0.462934031891484	0.363862424030019	0.74933829766087
Merged-chr12-101959405-3	chr12	101958923	101959923	+	833.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	5.39827430872636	5.76062240890296	5.59445915615815	5.75115431629313	5.76505943072356	5.65705167879893	0.245924208773155	0.450716246925468	0.808519941234761
Merged-chr7-67229733-2	chr7	67229233	67230233	+	754.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7117.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.31752671622086	3.14484738500785	3.37067991994107	3.01053545591273	3.18506718867144	3.59233101323255	0.00262197654586708	0.996878320386407	0.999244091538617
Merged-chr12-12305526-2	chr12	12305026	12306026	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MTA_Mm|LTR|ERVL-MaLR	43387.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.11676249676884	2.39073028376841	2.51143850377864	2.386648883134	2.21800997831711	2.58530798233865	0.340388559460637	0.704763642538318	1
Merged-chr13-45950691-4	chr13	45950174	45951174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	14317.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.40812972983126	5.24453749680465	5.42178612302072	5.30483839829881	5.3490120584964	5.20280354852554	-0.126647159091601	0.712356056329199	0.925048627306913
Merged-chr10-98921987-2	chr10	98921487	98922487	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	6835.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.0266304882045	4.07619507958014	4.18684142999088	4.08600608012379	3.83933571655408	4.0720038367218	-0.286094431678331	0.561830355397847	0.865580593452079
Merged-chr2-71037710-4	chr2	71037201	71038201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MLT1L|LTR|ERVL-MaLR	17905.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.20717518951666	6.47906883768345	6.5494352471359	6.44632668383358	6.62742345607333	6.39352208026125	0.138682615846214	0.621378689489553	0.890674900862132
Merged-chr7-142387945-4	chr7	142387439	142388439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-69.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	8.07323913036148	8.16200076494363	7.98299088881456	8.17107060484451	8.24999699709623	7.92165562998504	0.0710540776557248	0.748795220825759	0.937087780077821
Merged-chr15-53237698-3	chr15	53237201	53238201	+	956.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	108482.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.02079773170218	2.80607688192054	2.82734446376193	2.59898266650145	2.49083242945951	2.71409336340859	-1.65641221633681	0.0346083648060376	0.228040292903134
Merged-chr2-91206800-3	chr2	91206295	91207295	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007387, exon 7 of 11)	exon (NM_007387, exon 7 of 11)	3883.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	7.30740044813783	7.13528988939533	7.16250015532725	7.3003675918013	7.17491302511842	7.37956194084486	0.114716212499412	0.62800223315599	0.893488985302709
Merged-chr4-32572327-4	chr4	32571816	32572816	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	-654.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.76680384434683	6.47583081074087	6.49241255825741	6.57500004009057	6.4548641478042	6.09549644895915	-0.302773560972021	0.302652841010889	0.699279082410076
Merged-chr2-90502250-2	chr2	90501750	90502750	+	785.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-23076.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.51171558306643	4.6677009817954	4.85128497564905	5.13994664339692	5.03671798182792	5.1237829840668	0.944796909801621	0.0154420141043633	0.135395058966898
Merged-chr17-28707461-4	chr17	28706946	28707946	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	14878.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.29650896478866	6.32377939564998	6.03632969555392	6.16610717429293	6.48640654905252	5.95037493651756	0.0048077902532865	0.987716547727532	0.997223245230291
Merged-chr13-38960460-4	chr13	38959928	38960928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131019)	promoter-TSS (NR_131019)	109.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	7.0425795700206	7.13675054202453	7.15458879307766	7.24660089997199	6.84537682608458	6.69809933497698	-0.233983546040641	0.38728985175309	0.767568930656228
Merged-chr16-30600633-4	chr16	30600145	30601145	+	874.220215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	922.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	7.10750450406297	7.06689309270997	7.01283458516522	7.37305183279397	7.26659513165007	7.2940947389615	0.368627584179145	0.111653522183683	0.446313714155454
Merged-chr8-115571907-4	chr8	115571393	115572393	+	939.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	135001.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.034978436448	3.64824516822976	3.7795948285719	3.58562288445365	3.40607119446444	4.40797366585007	0.148065883088214	0.821404473401937	0.958007382080696
Merged-chr17-8857162-2	chr17	8856672	8857672	+	654.5	f0_balb.idr|f0_c57.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	7187.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.16216273677439	4.27292706545788	3.93185944859888	4.2171428211496	3.63636614047639	3.89750792273586	-0.576148024319926	0.29249778413811	0.6896822727195
Merged-chr10-127070825-2	chr10	127070325	127071325	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	344.0	NR_040660	100504703.0	Mm.387029	NR_040660	ENSMUSG00000112639	A730063M14Rik	-	RIKEN cDNA A730063M14 gene	ncRNA	5.15610658878925	5.09985348506751	4.8941344676266	5.17169900506618	5.30914009814367	4.51660675878118	-0.00409281287562216	0.992583174157754	0.998523796268552
Merged-chr3-58672837-1	chr3	58672337	58673337	+	715.0	f1_balb.idr	Intergenic	Intergenic	19551.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	3.51566162378474	3.40081215927575	3.75088939377576	3.38005128814001	3.54988965138671	3.46054286987646	-0.318483880298555	0.589277587845295	0.876779541179768
Merged-chr9-118627696-2	chr9	118627196	118628196	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 2 of 27)	RLTR17B_Mm|LTR|ERVK	20987.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.21596738213193	3.31263971397671	3.34926937895228	3.24233535266303	3.38238070163414	3.81842665979709	0.773499559454931	0.222912588213126	0.617776133760918
Merged-chr2-103832120-4	chr2	103831624	103832624	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-21502.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	3.63654603193461	3.57079366881921	4.05321239076358	3.53172213138593	3.46736329816711	4.11970446852563	-0.101379355979688	0.869843529317861	0.969901645415424
Merged-chr17-22866179-2	chr17	22865679	22866679	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	955.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	5.38039833992057	5.57121213929504	5.53744540479534	5.48415607392611	5.59631208029029	5.36070433873463	-0.00869151105056812	0.979190354347587	0.995177657748265
Merged-chr9-44579597-4	chr9	44579082	44580082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25310.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	6.53231102571581	6.23532004812745	6.3339944238506	6.64070985376383	6.97762514019447	6.86372396442975	0.735472006824417	0.00781942637639534	0.0847075680155063
Merged-chr2-163676967-4	chr2	163676465	163677465	+	931.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-17072.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.20190737843896	5.29004794692592	4.95275057991895	5.31472056300824	5.38753250529926	5.42347998660254	0.413824639234277	0.245344557468432	0.642413932212011
Merged-chr11-86760479-2	chr11	86759979	86760979	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2912.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	3.31893442696687	3.30752533617392	3.39433848155083	3.17608337676412	3.03696222149301	3.18538028656368	-0.884704735127224	0.160569475900072	0.533253440458717
Merged-chr9-116088071-4	chr9	116087579	116088579	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	87284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.04215277971623	4.69595122790752	4.76412741535897	4.52197596888451	5.06559948268251	4.75128939441604	-0.0794262011533187	0.854909098251636	0.966038421653227
Merged-chr10-19687900-4	chr10	19687465	19688465	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24622.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	3.2345854892571	2.97599350611539	2.94948787199538	3.08598015521716	3.00224660527887	3.4725461173995	0.571210113517273	0.413866919679328	0.785390988041999
Merged-chr2-153496554-4	chr2	153496015	153497015	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	33456.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.97070912840536	4.050696767224	3.78770382318453	3.9148783811458	3.76360154910968	3.85844562323017	-0.323551845827071	0.530963216662046	0.851363932161699
Merged-chr3-89285429-4	chr3	89284949	89285949	+	803.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4498.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	3.65190829120231	3.33583904419151	3.20260698405033	3.20486403093457	2.97804901770331	3.27619355301057	-1.07907951229835	0.106267228317847	0.43523050445773
Merged-chr16-94524180-2	chr16	94523680	94524680	+	962.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	2449.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.52590822326585	4.38050894674448	4.31015296407335	4.60599377580574	4.35664121850566	4.3788519708646	0.0972468004320475	0.826448443155082	0.959132530412348
Merged-chr14-45686471-2	chr14	45685971	45686971	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28328.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.76904658133356	4.95625495129922	5.14119692339357	5.70725653260587	5.49938066828158	5.54096222851076	1.27320781343005	0.000394458449553591	0.00868999170517744
Merged-chr11-78030518-2	chr11	78030018	78031018	+	755.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_174852)	TTS (NM_174852)	-1795.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	3.1686238459092	3.17691353527623	3.52769660947716	3.06373696202628	3.21213436936038	3.49729163267796	-0.122184062316327	0.852947277707025	0.965592809396418
Merged-chr10-67048444-2	chr10	67047944	67048944	+	627.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43369.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.55221801893568	5.72409267445223	5.57202223927647	5.79818779320092	6.0284229454772	5.66362538072443	0.415873784886623	0.197109542217091	0.585032456070594
Merged-chr12-80877866-4	chr12	80877388	80878388	+	833.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178682, exon 6 of 6)	3' UTR (NM_178682, exon 6 of 6)	46559.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	3.20359082311292	3.09006484835441	3.34295409696705	3.17375547466283	3.08458899090835	3.51606941638053	0.211297782811445	0.746296257689441	0.936300236930265
Merged-chr2-47088924-3	chr2	47088435	47089435	+	748.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1392330.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.29423952924732	3.50843093313735	3.27662269690638	3.41770531666715	3.3345003646886	3.86406334992167	0.674768728676052	0.286079764359415	0.68342985932029
Merged-chr12-85516026-3	chr12	85515546	85516546	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42156.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	2.67376307231779	2.5357743660089	2.66833651354537	2.64786753751553	2.49192840164081	2.74157839107706	-0.000399724462607786	0.999583454205093	1
Merged-chr18-36514220-4	chr18	36513783	36514783	+	945.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	1522.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	5.61441125361853	5.60479124253606	5.44270217582757	6.15215772535878	6.25714767049829	5.97433094083113	1.02460619419211	0.000911808355498194	0.0167816300916376
Merged-chr17-43553978-3	chr17	43553462	43554462	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-10323.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	3.67356418807297	3.97208633989464	3.86539659855795	3.40023068558265	3.47970130663723	3.57639124675914	-1.25283808908476	0.0277113064079886	0.198730598085861
Merged-chr5-62764345-4	chr5	62763851	62764851	+	624.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	1826.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.59060876530619	6.72894868540862	6.21038805378463	6.78214225358098	7.20148021724869	6.81038709684572	0.645622092168323	0.0303361520607293	0.210427550373688
Merged-chr3-52196317-6	chr3	52195736	52196736	+	991.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72101.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.29613648675273	3.31851366656291	3.29756304906422	3.39771928319449	3.35536389746021	3.25277260544554	0.139856802542841	0.816725628838131	0.956754861188725
Merged-chr1-131448547-4	chr1	131448046	131449046	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	78815.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.09089782710669	6.23114859230111	6.1516833487074	5.89000178448047	6.08806392330233	6.01420565633211	-0.268307590614191	0.353111689231406	0.740466669293519
Merged-chr7-126739623-4	chr7	126739081	126740081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-20045.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	6.40051065237467	6.85630954393818	6.73583900384922	6.66706972898702	6.5718887946989	6.61864648588724	-0.0947331149696777	0.73244655252188	0.931782229960786
Merged-chr5-120776799-2	chr5	120776299	120777299	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	860.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	5.31099681937259	5.18669672441827	5.48731477666464	5.55308367200132	5.2546089083334	5.24678770054566	0.0693184298247012	0.845387754933496	0.963773214686551
Merged-chr12-111889415-4	chr12	111888917	111889917	+	907.354126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	MIRb|SINE|MIR	18638.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.22807762696721	4.25203192332326	4.20244299738601	4.62339841902747	4.39650957954602	4.31889717294221	0.593290331073032	0.188597358468314	0.574218193253741
Merged-chr11-77785474-2	chr11	77784974	77785974	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8239.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	7.23442082499148	7.50595039800282	7.28668165404473	6.28351010322794	6.35569181765994	6.18237850907519	-1.66070975666635	2.59098286407413e-10	3.13814413615546e-08
Merged-chr7-75667750-4	chr7	75667233	75668233	+	777.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-180605.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.46127912303161	4.44144958492262	3.94702344888616	4.03058668009079	3.74314731823148	4.07023337146809	-1.04326481123741	0.0465923158031311	0.273105405838866
Merged-chr2-120128767-4	chr2	120128260	120129260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	25815.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.2495334524354	5.84124576359574	6.10979080998869	5.85311689621197	6.1595643469882	5.96818334249454	-0.120366494330474	0.701305627359972	0.921233461961292
Merged-chr11-115475650-4	chr11	115475153	115476153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-14.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	6.99624488503722	7.0170563204917	7.13926959238867	6.86175420634487	7.41575266390932	7.03062342410852	0.12910471329948	0.634788687488718	0.896354115104213
Merged-chr11-119297596-2	chr11	119297096	119298096	+	598.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138669, intron 2 of 11)	intron (NM_138669, intron 2 of 11)	2447.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	2.73148690506993	2.8613862283485	2.91532288425446	2.77405996765212	2.72424919438691	2.68032154246278	-0.562771263928441	0.439044958827323	0.800937323779458
Merged-chr5-99248703-4	chr5	99248208	99249208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	4219.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.8558585101329	7.65160467278265	7.45561902517469	7.75906256307168	7.8035919333819	7.83835579168115	0.184202076833915	0.428146017342179	0.794938610086088
Merged-chr3-127492189-2	chr3	127491688	127492688	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	6927.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.35903424846897	3.50019821170121	3.45518348156567	4.57872356554041	4.65161401996189	4.30115848254603	3.66120727318198	4.00349611991921e-09	3.99427943820429e-07
Merged-chr14-21409821-2	chr14	21409321	21410321	+	769.174988	f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 9 of 10)	intron (NM_134079, intron 9 of 10)	-89949.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	3.70119592675595	3.9764898424827	3.64778510644173	3.64073721601669	3.75499755164399	3.48999184898773	-0.494386949553989	0.385299245799153	0.766341662207074
Merged-chr13-48878025-2	chr13	48877525	48878525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7140.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	6.93103764218086	7.36872727604353	6.80470161030024	6.89042899873753	6.89656479375923	6.49756743180066	-0.43496613242985	0.140359934705204	0.500699117062725
Merged-chr7-19077873-5	chr7	19077335	19078335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1635.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.92429257248262	4.77876930525392	5.32224623753613	6.62672416661602	6.68923460121775	6.27901196595835	2.84818267745209	1.70727997547743e-16	6.31374898664559e-14
Merged-chr4-125124945-4	chr4	125124422	125125422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2959.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.74262393705593	7.56649563400606	7.68733059254104	7.91451874897536	7.94967982934668	7.64228153849525	0.26340692344701	0.249421925186277	0.646337575549666
Merged-chr9-96631565-4	chr9	96631058	96632058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053268)	promoter-TSS (NM_053268)	-55.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	7.1214967532285	6.57154293047437	6.36792749231077	6.82106707106515	6.15891267585708	6.1682024964549	-0.490863548126177	0.169491835359167	0.546370768477266
Merged-chr12-91383694-3	chr12	91383203	91384203	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 1 of 25)	MIRb|SINE|MIR	706.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	5.13931095523118	5.23778210852533	4.87550044586222	5.0261905142144	5.07709969080974	4.59876705555422	-0.36196968603277	0.377197329854713	0.759616521190546
Merged-chr19-41327536-2	chr19	41327036	41328036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	intron (NM_031376, intron 6 of 16)	57534.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.89594716230524	4.16082524326047	4.0546570585952	4.1345515999046	4.26789602621287	4.2171205744676	0.472330467352347	0.326717046037154	0.719059220955365
Merged-chr6-97457392-4	chr6	97456881	97457881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1905.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.63713440004816	8.58421622691098	8.16142918247817	8.32398401003536	8.74746770794586	8.18910888325085	-0.0457777697957368	0.861450786863233	0.967819025542415
Merged-chr4-152478551-2	chr4	152478051	152479051	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153424, intron 1 of 29)	intron (NM_153424, intron 1 of 29)	409.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	5.01666122415816	4.83594504056352	4.99664037527735	5.07025746332477	4.72887406814178	5.06103935894187	0.00816459864882258	0.983361619835362	0.996283289789735
Merged-chr16-33624932-4	chr16	33624424	33625424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134251, exon 9 of 13)	exon (NM_134251, exon 9 of 13)	-59542.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	6.11257476260376	5.70626045278884	5.77887902628319	6.1087488529668	6.13840506291357	6.01435508059169	0.360438282824307	0.245820298821133	0.642837179023604
Merged-chr10-51454944-2	chr10	51454444	51455444	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25668.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	8.09321249290971	8.22363244511527	7.9387186784472	8.07545809207159	8.68975745926402	8.0181301474042	0.301991821401258	0.264450861867684	0.662362648056359
Merged-chr8-46935071-4	chr8	46934564	46935564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51823.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.79903847009403	7.78057865414901	7.78204965050925	7.82687078553227	8.25833623904769	7.85518807218987	0.309019220761626	0.194119038120849	0.581321633463051
Merged-chr12-112633146-4	chr12	112632665	112633665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-11663.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	7.69656632609077	7.66267394924424	7.82125243062699	7.71448588926054	7.73360355479185	7.57655766590875	-0.063887780774666	0.771568286560237	0.943614978016208
Merged-chr13-75824796-4	chr13	75824314	75825314	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15071.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.56128206523052	4.76049732489699	4.90916289521728	4.57714231944636	4.62366988240491	4.72036694720802	-0.247936780767642	0.548108159032814	0.859503669232264
Merged-chr11-47064927-2	chr11	47064427	47065427	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	254128.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.72328467063982	4.67558746229162	4.72333941455466	4.56852937962694	4.44463314115985	4.9311873637602	-0.133598511072493	0.753836868733774	0.938570691167124
Merged-chr8-90833122-4	chr8	90832575	90833575	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	4240.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.91593172157492	5.02886076790722	4.90901602808064	5.51107911463692	5.53223387067336	5.22960960181039	0.987792606131676	0.0061457732023558	0.0709950710289631
Merged-chr5-115631864-4	chr5	115631376	115632376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	-60.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	5.31748118476729	5.20582802385283	5.51737999485775	5.2916548355206	5.05856160259981	5.38319692899609	-0.207133463372639	0.56504860678323	0.866552670637515
Merged-chr17-34295125-2	chr17	34294715	34295715	+	670.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7444.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.68497007168498	4.94975762012501	4.55768123062623	5.40077785302486	5.86817658581302	4.90057986163399	1.47036900420644	0.00114687878801922	0.0200230002726065
Merged-chr5-101998432-4	chr5	101997940	101998940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	71481.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.73079867052671	7.53752235875087	7.3670260426794	7.45960153842915	7.45212640691785	7.062224040698	-0.311922703013371	0.223706235305856	0.618471888471598
Merged-chr9-64959982-2	chr9	64959482	64960482	+	681.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	-850.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	4.22737197261041	4.38074174962441	4.66213722393106	4.4097114711476	4.35861534398759	4.72678404557696	0.184265545158098	0.688870683084989	0.917235946766438
Merged-chr17-88337856-4	chr17	88337351	88338351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102853.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.98338117216207	5.99769963759783	5.93566760347909	5.60769802216529	5.71901184598898	5.51855678871978	-0.624761297734044	0.0420602815530792	0.25680598088264
Merged-chr1-175625658-4	chr1	175625208	175626208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-73.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	7.0783662172948	7.1288134468482	6.88649891601207	6.90283408405513	7.0280081376602	6.72651317173528	-0.215037245368865	0.398807323095367	0.775423220616012
Merged-chr11-101551433-2	chr11	101550933	101551933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252220)	promoter-TSS (NM_001252220)	522.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	4.77174546663003	4.5170383938214	4.53456072328837	4.72058384350527	4.80140421435299	4.87733573452716	0.422652076138243	0.301825319547222	0.698499477656988
Merged-chr4-32161722-1	chr4	32161222	32162222	+	649.0	f1_balb.idr	Intergenic	Intergenic	197615.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.97470634016804	5.24048918352006	5.67964007791529	5.19715048277534	5.09089781347652	5.22216055969629	-0.304624328768761	0.438554284984728	0.800615097962194
Merged-chr8-94711513-4	chr8	94711023	94712023	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15281.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	5.40942380968342	5.56714211888247	5.89254530106841	5.76256968435097	5.93616828335586	5.93053911247562	0.46079555493141	0.160969874629047	0.533655406039239
Merged-chr19-53855173-4	chr19	53854666	53855666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-37065.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	5.22714971106868	5.60732928244493	5.61280926075011	5.36137729155588	5.81222539228393	5.25235285654444	0.0436802745676767	0.907963128969344	0.979080867182639
Merged-chr2-155382849-2	chr2	155382350	155383350	+	753.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	994.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	6.23408846994946	6.06990892449242	5.78947054073638	6.45735481105101	6.46378975243966	6.03434300283986	0.483162696373375	0.125393258232431	0.473876111606682
Merged-chr7-92877699-2	chr7	92877199	92878199	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	ORR1B1|LTR|ERVL-MaLR	2446.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	5.89573918867104	6.27931348002502	6.05549665490442	6.31343830033264	6.5029127245117	6.16144793454635	0.422415462051084	0.162219784552046	0.535591771804088
Merged-chr11-87404554-4	chr11	87404057	87405057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031386)	promoter-TSS (NM_031386)	-62.0	NM_053269	114714.0	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	8.30236417537961	8.75395828850585	8.1077557511786	8.04740080098097	8.58424550354414	7.93269269074409	-0.270409077269098	0.352631150688607	0.740194084833795
Merged-chr8-125569075-4	chr8	125568549	125569549	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	814.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	7.23862124990654	7.41221430401675	7.00186012077166	7.23988789275146	7.56711804571624	7.16733947653238	0.162036994981847	0.540283250951609	0.85632302227606
Merged-chr12-28750047-1	chr12	28749547	28750547	+	1000.0	f1_c57bl6.idr	intron (NM_001161410, intron 1 of 11)	intron (NM_001161410, intron 1 of 11)	347.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	7.3861170384667	7.85188492920127	7.21830495711306	7.81765671776503	7.98337058157144	7.22437526608446	0.29106012041488	0.346727810494807	0.734876783811405
Merged-chr4-53093355-2	chr4	53092855	53093855	+	728.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	66540.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.46014919977417	2.38981922117187	2.63016945206674	2.35258872856689	2.3763338778427	2.45785000307745	-0.619742275093454	0.446093250054306	1
Merged-chr11-117783241-4	chr11	117782718	117783718	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 2 of 16)	exon (NM_001195088, exon 2 of 16)	560.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	7.31326556946549	7.42675597774244	7.58182445412904	7.30230333931121	7.46009754177178	7.16541106811933	-0.17374537452405	0.472398211787781	0.820550293768681
Merged-chr17-86300838-4	chr17	86300318	86301318	+	802.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-13640.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	5.22501535201561	5.1353717591118	5.02112707456193	4.68249676481055	4.6299568171565	4.57401497110101	-1.12488130793137	0.00385464382596943	0.0505177513736438
Merged-chr10-78426567-4	chr10	78426079	78427079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007793, intron 1 of 2)	intron (NM_007793, intron 1 of 2)	909.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	6.8609167106463	7.34384559362742	6.83650630883843	7.00183709069203	7.24016416240954	6.84886893449957	0.00630911837428311	0.982433028174363	0.996007108320935
Merged-chr4-33241639-2	chr4	33241139	33242139	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7148.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.39365463316039	3.5140773943889	3.7144159296772	3.29592814415888	3.24102437269886	3.58667771626552	-0.627542802857932	0.304166511173893	0.700729014758405
Merged-chr7-90205816-2	chr7	90205316	90206316	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 19 of 19)	intron (NM_001360867, intron 19 of 19)	59616.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	3.12761183005093	3.1482087005837	3.08489610075053	2.99228979072678	2.87824564040775	3.09854230136269	-0.622632757438	0.350326342068986	0.738366074897444
Merged-chr7-80324377-4	chr7	80323859	80324859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173445)	promoter-TSS (NM_173445)	95.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	8.03938229240072	8.51080419695612	7.84432116077384	8.13195054512521	8.27298712075675	7.52244681856422	-0.205420614208657	0.496972696784397	0.83342612721519
Merged-chr11-86688577-2	chr11	86688077	86689077	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175004, intron 2 of 2)	(CACTA)n|Simple_repeat|Simple_repeat	4496.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	3.29665462265406	3.44081502791161	3.78188889805526	3.36762481382025	3.45598786953054	3.6124720406185	-0.129361542008935	0.832153604776126	0.960611438244586
Merged-chr16-52040185-1	chr16	52039685	52040685	+	552.0	f0_balb.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	8636.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.21728916522112	3.67177765163397	3.60208352980423	3.40736746937171	3.14274455532724	3.56973545310135	-0.494049587559936	0.443804590353228	0.803884349333946
Merged-chr12-32818852-2	chr12	32818329	32819329	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1506.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.94623207266312	5.05562081517297	5.04915379606958	4.61975791730335	4.84936368431541	4.38521424692992	-0.827187128342765	0.0501642698265184	0.285159854855906
Merged-chr6-114258916-4	chr6	114258434	114259434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23701.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	7.00595683026443	6.48140598170187	6.39270047348886	6.65144777324658	6.45738998543145	6.2889568346402	-0.297884044156895	0.338858457539327	0.728835613269201
Merged-chr7-116371751-4	chr7	116371251	116372251	+	808.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-37561.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	3.44090114219852	3.75975076747062	3.6658563472366	3.64483839546958	3.58772119694251	3.8352856974186	0.196612938592358	0.727787837680663	0.930226887829994
Merged-chr5-117396628-4	chr5	117396113	117397113	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7590.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	3.75869455227554	3.63925782891505	3.7296685666977	3.35748823913079	3.21752968151415	3.54151862309152	-1.27317277882006	0.0318443468568354	0.216390723827159
Merged-chr2-163602293-4	chr2	163601785	163602785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-29.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	8.12319912015872	8.06206657826661	7.86156858958245	7.9454562558384	7.7754397106537	7.34562309295439	-0.431851161667737	0.0921389315778908	0.404323138894002
Merged-chr13-35741958-4	chr13	35741441	35742441	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	CpG	539.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.79591658605638	5.42813404092101	5.41660874406238	5.85948260505513	5.33151037562084	5.38549366969454	-0.0286649207310982	0.938274665395271	0.986329918364324
Merged-chr9-62373941-4	chr9	62373447	62374447	+	724.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	32604.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	4.88879294994274	4.96961589016087	4.83459158586711	4.61023616205265	4.82701353156915	4.66283970614267	-0.434392036265698	0.274074367664087	0.671556325112809
Merged-chr12-84766451-4	chr12	84765891	84766891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	RMER13A1|LTR|ERVK	6721.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.71048802590079	5.4386131951785	5.29183891954949	5.20805947678059	5.64260066592116	5.59615808747122	-0.00223991805825386	0.995068722298681	0.998961028701257
Merged-chr14-73120186-4	chr14	73119690	73120690	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22320.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.82215068592807	4.56953890528702	5.30644286239966	5.22230143219616	4.87851540034892	5.22246455406884	0.402365336799451	0.353320732796007	0.740662372067875
Merged-chr7-104353980-1	chr7	104353480	104354480	+	650.666687	f0_balb.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-622.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	6.15492185299718	6.54068068582337	5.8747927522249	5.86304565643003	6.13589688340308	5.52922239896146	-0.596202954934094	0.0978123119932391	0.417064164942457
Merged-chr6-125161742-2	chr6	125161231	125162231	+	662.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302779)	TTS (NM_001302779)	4042.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	3.51744795191285	3.34289079316651	3.72063080757442	3.59993038249757	3.58664026116817	3.78941535379684	0.454837263230837	0.430131466526241	0.796105989515053
Merged-chr17-65784820-4	chr17	65784324	65785324	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	MTC|LTR|ERVL-MaLR	1469.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	6.10431140772127	6.16455514929985	5.81514761225069	6.41079204403775	6.37852862304394	5.7949248495282	0.322952207912306	0.328994733685551	0.721105303873632
Merged-chr16-4840463-4	chr16	4839989	4840989	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	L1MB7|LINE|L1	5073.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	6.38899008744787	6.56443924923732	6.39458584220074	6.3805196913418	6.46993435561667	6.02306838397706	-0.221854030398991	0.445728642038379	0.805334424093105
Merged-chr9-90227385-3	chr9	90226912	90227912	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 5 of 13)	exon (NM_194334, exon 5 of 13)	43357.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.08747035147615	6.19370141454861	6.05170745485151	5.94433747019154	6.20770270147757	6.0674879652586	-0.0555687152178777	0.848689515827865	0.964356989789491
Merged-chr11-22954541-2	chr11	22954041	22955041	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-17464.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	3.13581543289178	3.11320564511301	3.12997945990395	3.17806696942637	3.12485300198279	3.42240725826578	0.485200213152155	0.448392210229502	0.807245803917729
Merged-chr11-120795854-2	chr11	120795354	120796354	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026824, intron 1 of 13)	intron (NM_026824, intron 1 of 13)	541.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	5.73589060082525	5.67515544763125	5.58355919615392	5.69245481724789	5.60813247636943	5.50029074308785	-0.119112610875395	0.707568900217166	0.923448664427975
Merged-chr5-65480596-4	chr5	65480095	65481095	+	951.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	ID_B1|SINE|B4	12240.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	5.63984055356691	5.54358169919527	5.6949228924753	5.4797288530265	5.63802716256789	5.85433151126559	0.065654285694392	0.84022248438771	0.962819298477451
Merged-chr7-80774329-4	chr7	80773755	80774755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	MIRb|SINE|MIR	29076.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.05686783434838	8.26296107519288	7.50778894106614	7.7492202992931	8.05075687481181	7.67600120905138	-0.211400105436568	0.452130735101614	0.809286173636239
Merged-chr18-66472622-2	chr18	66472122	66473122	+	661.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14018.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	5.70628526443652	5.33629347126356	5.89295132610959	5.63286187056989	5.41769339344313	5.69038738937197	-0.143858404641482	0.682741952381795	0.915212496624716
Merged-chr1-131978876-2	chr1	131978376	131979376	+	889.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145977, exon 4 of 5)	exon (NM_145977, exon 4 of 5)	8267.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	5.49801379172058	5.75555460042877	5.88639817480744	5.51853068792596	5.49293033001182	5.45158111585693	-0.422733966219869	0.201661168067692	0.591183995476557
Merged-chr4-133160430-3	chr4	133159923	133160923	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	RSINE1|SINE|B4	29790.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	7.31892382930446	7.25706409045695	7.21620755984266	7.46869648372987	7.48875962156952	7.01076437863871	0.126589795337365	0.61989679419454	0.889979882381751
Merged-chr11-115599344-2	chr11	115598855	115599855	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	4561.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	4.56391664624707	4.47082965987052	4.32399820859371	4.25076483025214	4.55972570839006	4.96519633334459	0.37953299478703	0.422923460417577	0.791654262899887
Merged-chr7-110621717-2	chr7	110621217	110622217	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5940.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	2.75915335611547	2.71830087110565	2.7009697843944	2.8888301320394	2.87297615674373	2.95961241237357	0.912352332540482	0.200813106245753	0.590111109711357
Merged-chr13-60743832-2	chr13	60743332	60744332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	42532.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.63893908783377	2.73705656637167	2.53732069954222	2.59978260229596	2.4920701575651	2.73802143446406	-0.196973401506357	0.799532386537538	1
Merged-chr4-82858548-4	chr4	82858063	82859063	+	870.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149737, intron 1 of 7)	intron (NR_149737, intron 1 of 7)	1110.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	4.43301191497376	3.7528527632849	3.88018703192373	4.80170087989565	4.66520619294189	4.62894244261523	1.63360125013573	0.00249213980709469	0.0366435711377868
Merged-chr17-83732330-4	chr17	83731819	83732819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	26156.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	7.43372649035761	7.5993748925832	7.38589871377155	7.43686166440286	7.74773874537169	7.52662986005508	0.149546574454909	0.529221227681954	0.850847288056475
Merged-chr4-46574322-3	chr4	46573845	46574845	+	703.222229	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-7905.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.97393240812118	4.63495169243654	4.9834251196075	4.82124115284372	5.04560097219094	5.11429446128559	0.283378045797607	0.476580241874343	0.822638497373308
Merged-chr3-89164795-4	chr3	89164296	89165296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007712)	promoter-TSS (NM_007712)	1.0	NM_001163432	12748.0	Mm.288098	NM_007712	ENSMUSG00000068917	Clk2	AU041688	CDC-like kinase 2	protein-coding	7.83095866411844	8.04846119244303	7.61463535489193	7.82554047075765	7.72481939120084	7.64247428147875	-0.166524137623377	0.482371818806939	0.825570196891311
Merged-chr10-94107362-4	chr10	94106857	94107857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-40574.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	5.01374073272926	5.4826758745781	5.23040291374472	5.662821905069	5.54590945182894	5.65018908413926	0.685421561973566	0.0538987008588756	0.29777591800447
Merged-chr2-19055647-4	chr2	19055153	19056153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57334.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	3.12068359146612	2.98046827125191	3.25160539506805	3.04450694088439	3.12667997942382	3.21199730775682	0.0468816124892316	0.942763342372987	0.987202156853573
Merged-chr4-3660140-4	chr4	3659632	3660632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	3626.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.07403598897525	7.20434344809876	6.78610303571389	7.02070407864136	7.22401525833953	7.00804789173029	0.0764217882883868	0.768782442170612	0.942938240859946
Merged-chr10-51532098-2	chr10	51531598	51532598	+	795.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	41200.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.37281668448701	4.45650870900307	4.75137557929071	4.26568956583059	4.12437886960043	4.63620505885871	-0.462926711874021	0.329170705925807	0.721152738507735
Merged-chr11-121722684-4	chr11	121722161	121723161	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20234.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.29645909206916	4.23195402348083	4.31891615825442	4.11625387835832	4.20191718877488	4.6604900811848	0.147603392510383	0.758381620434251	0.940121252394213
Merged-chr1-24680615-2	chr1	24680115	24681115	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	Charlie1a|DNA|hAT-Charlie	1697.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.32921430159235	5.30839830355304	5.42349144103459	5.53793200995509	5.54677740190691	5.12447619505361	0.156280379465443	0.657860424886968	0.904859102731141
Merged-chr11-44528643-4	chr11	44528172	44529172	+	764.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	MTD|LTR|ERVL-MaLR	9295.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.04433694621587	5.86791762642902	5.99622653606879	6.62516969011141	6.57974654734363	6.258388937051	0.895459852667925	0.0019463994588532	0.0303004688816197
Merged-chr9-118858170-2	chr9	118857670	118858670	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-68366.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.23372091183797	4.24431514037128	4.39127010458149	4.0988370729984	4.03163882192014	4.00293364778481	-0.678048537835414	0.150790622923049	0.517849175420909
Merged-chr10-78466069-2	chr10	78465569	78466569	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1121.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	7.9939261595658	8.07494904245965	7.84677582222626	7.72902953842939	8.02330768684153	7.76720762322718	-0.180633559648156	0.429038933519324	0.795570481157701
Merged-chr17-74454117-4	chr17	74453621	74454621	+	884.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4987.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	6.62319083168201	6.45339326393791	6.38380773609927	6.42811770915927	6.38284365558802	6.32598975827034	-0.185761107159419	0.490578808434767	0.830091427684216
Merged-chr15-41613151-3	chr15	41612649	41613649	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	164046.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.04913323700218	5.68151767797284	5.47382400985957	5.6136300008683	5.58748612944544	5.47566949052664	-0.376930846839208	0.274775961360978	0.672180813574537
Merged-chr11-98209167-2	chr11	98208667	98209667	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 1 of 12)	B1_Mus1|SINE|Alu	5862.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	3.41770352105877	3.40794089154876	3.58082012935712	3.4285865539156	3.18472222393044	3.44039026101104	-0.449621950715565	0.456501504414922	0.811680471504093
Merged-chr12-100202042-4	chr12	100201561	100202561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 1 of 5)	AmnSINE1|SINE|Deu	1917.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	5.87007268226958	6.23051188198964	5.90393531951988	5.98308320602289	6.03309348714915	5.81280938750804	-0.114164849534743	0.713621287264971	0.92557476402444
Merged-chr7-47054830-4	chr7	47054319	47055319	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026436)	TTS (NM_026436)	4179.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	5.97711293913558	5.89127787074789	6.388746129623	6.23948915909033	6.0998168069049	6.05151092677957	0.0741794893101376	0.811213314999532	0.955145794362684
Merged-chr13-58478078-4	chr13	58477584	58478584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-74741.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	7.61972653382896	7.7593177117219	7.00923203758203	7.34146930394983	7.74295009823705	6.99318494071009	-0.152088383103397	0.636307626574767	0.8970753299382
Merged-chr6-114655470-3	chr6	114654953	114655953	+	844.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	12356.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	2.89602157563109	2.74843431174353	3.34021634394808	2.6711238494704	2.75948696893068	3.04287174930257	-0.868267100996024	0.261741399571376	0.659531304499251
Merged-chr2-130473197-3	chr2	130472698	130473698	+	719.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	22920.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	5.5665209524134	5.60014489504446	5.34885354889561	4.98551396582915	5.00541735545523	4.92387017039019	-1.09865523684083	0.00199365255576626	0.0309146183116286
Merged-chr7-80832894-1	chr7	80832394	80833394	+	590.0	f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-29214.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	6.27388801941846	5.86555783364101	5.8591031542044	6.24461387125857	6.26090321787323	6.04397513302743	0.289475951702022	0.35111465120767	0.739054106844951
Merged-chr2-73371350-3	chr2	73370791	73371791	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	15189.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	5.23740602426099	5.4494476373897	5.56419549304271	5.15935257640973	5.29517829714671	5.31121831615519	-0.317626645025379	0.363562241955308	0.749213045651585
Merged-chr8-14608093-3	chr8	14607652	14608652	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-280384.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.98416353095234	3.80506095679714	3.61110012775429	3.33411136828175	3.00301525571079	3.33758870244266	-2.35011581335967	0.00041455899809178	0.0090465840842436
Merged-chr11-76243765-4	chr11	76243277	76244277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026029)	promoter-TSS (NM_026029)	41.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	6.00244020574906	6.19018149777127	5.87242495432699	5.98298434222525	5.9435671742505	5.44008160226401	-0.365991283976727	0.275023748787383	0.672401372506524
Merged-chr3-103280476-3	chr3	103279976	103280976	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079830, intron 1 of 18)	CpG	1183.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	6.32800665392787	6.07978230533375	6.35193775022432	6.57242337250398	6.02678026207237	6.5183034372804	0.218162543349413	0.485291621551234	0.827394620754206
Merged-chr16-91612704-4	chr16	91612242	91613242	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6257.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	7.07070930786404	6.7424390375254	6.77266656009763	7.73678033659529	7.69231144515601	7.42122089455467	1.12182900737933	1.09513287057776e-05	0.000433303927223176
Merged-chr16-24435518-4	chr16	24435007	24436007	+	926.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-12584.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.42895022358359	5.40571083681856	5.14474016254808	4.96075823155963	5.05942340440557	4.55677196853974	-0.928325897799953	0.0216606401407215	0.170288978158462
Merged-chr10-118865204-2	chr10	118864739	118865739	+	639.0	f0_balb.idr|f1_balb.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	3664.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.7931785604558	5.45726850069807	5.78379693586882	5.46796519647453	5.57430459693852	5.37291541230497	-0.375701208105602	0.265274443585685	0.663013396735394
Merged-chr13-95680999-1	chr13	95680499	95681499	+	556.0	f1_balb.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-15921.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	2.49670549605409	2.63657748778951	2.7888509919861	2.27301318311089	2.17325487683432	2.56366088288229	-2.01180321790886	0.030776022124129	1
Merged-chr7-118821424-4	chr7	118820931	118821931	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 26 of 30)	intron (NM_027815, intron 26 of 30)	34182.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.22522229598349	4.12132289709518	4.44443903657011	4.23880171939126	3.92177940574106	4.16915720674741	-0.424526197217284	0.383848585398334	0.765036051179388
Merged-chr19-37434753-4	chr19	37434223	37435223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-118.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	7.01396492158795	6.78125673021484	7.13573936311052	6.74957265939835	6.49656820959722	6.87156512132583	-0.42491825640626	0.118073807487963	0.458969951100903
Merged-chr1-156581262-2	chr1	156580807	156581807	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	MTD|LTR|ERVL-MaLR	22520.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.24354039078478	3.26196869574272	3.45376126347949	3.95956802587377	3.74210982463477	3.46919136234364	1.57038022116866	0.00964339458154552	0.0980219370072367
Merged-chr4-133159887-4	chr4	133159386	133160386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	29253.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	8.22737296954481	8.24910901087879	8.08436041547671	8.1575827006171	8.54982300560394	7.9988521999779	0.104575691455668	0.667696692577374	0.908813236401378
Merged-chr7-64317711-2	chr7	64317211	64318211	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172742, intron 7 of 15)	MTC|LTR|ERVL-MaLR	30041.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	3.05954972133554	3.12304941814418	3.0194211621559	3.08901032793479	3.12700475447877	3.32077695523996	0.466994280560904	0.472843687131479	0.820550293768681
Merged-chr12-12233698-1	chr12	12233198	12234198	+	563.5	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28441.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.38586483779207	2.44181352720143	2.19793526916117	2.49901309220794	2.30905470806633	2.54157984512975	0.636455349895157	0.463187408090653	1
Merged-chr8-13588135-2	chr8	13587635	13588635	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 10 of 23)	intron (NM_009025, intron 10 of 23)	-25674.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	1.93703544210389	1.90897881635594	2.13990640042774	2.02659947586045	1.81180740261019	1.87815122558075	-0.723699398060403	0.459996762991472	1
Merged-chr3-79980949-2	chr3	79980449	79981449	+	676.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95019.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.03903162996121	3.29951113674519	3.30688548426657	3.26388688633884	2.84793166463233	3.37790342224217	-0.167952022264312	0.810659204515275	0.955084033068073
Merged-chr6-83040809-4	chr6	83040256	83041256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	6532.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	6.73085627910496	6.62526738601335	6.62059765641974	7.13852734478686	7.27664438821592	6.91711186971669	0.71803313272318	0.00496699655924098	0.0609398185935304
Merged-chr19-3321777-4	chr19	3321274	3322274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	6.33968631804674	6.72230724638933	6.55818314701441	6.75210678904077	6.82553367194807	6.6345050186973	0.306316954373341	0.260666179414386	0.65815540757737
Merged-chr1-106322026-2	chr1	106321526	106322526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	150157.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	5.68916176225712	5.4609509373344	5.25781622413389	5.65377218739352	5.33959601601777	5.48159526053353	0.00605150563475198	0.986278007432302	0.997033990984076
Merged-chr7-133116230-2	chr7	133115730	133116730	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	7253.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	5.33500762130311	5.47039758481731	5.13190930542111	5.01841920971506	5.24444299084021	5.29572509099024	-0.279968841092094	0.439448878549894	0.801140666192971
Merged-chr7-28824121-2	chr7	28823621	28824621	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1217.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	4.83950583551833	4.8629329278912	4.88876595407873	4.59722923576101	4.90323238282514	4.88114617459403	-0.133355117992957	0.736220870981162	0.933093679287768
Merged-chr4-45820203-3	chr4	45819687	45820687	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	6640.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	2.29001027101465	2.44107978824196	2.65786656843941	2.51941105166979	2.3014273196767	2.61058371955598	0.0741090299732615	0.929700367012548	1
Merged-chr13-98264293-4	chr13	98263791	98264791	+	851.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271391, intron 1 of 7)	intron (NM_001271391, intron 1 of 7)	1215.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	4.1484258276876	4.53891771596126	4.16513234021423	4.23735937399482	4.36354768878272	4.23445895010869	-0.0580575156208584	0.902965716015023	0.977670413769395
Merged-chr7-97083029-4	chr7	97082544	97083544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	1293.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	7.58453876327447	7.85889950657451	7.42149778175496	7.54272461514041	7.83809881430552	7.70502877486733	0.0892496305492614	0.71857759976768	0.927402544945102
Merged-chr19-55230619-2	chr19	55230119	55231119	+	983.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 5 of 20)	intron (NM_001081076, intron 5 of 20)	10617.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	3.49696597082462	3.43743550494786	3.59474079693405	3.68380738565252	3.54536641241422	3.61218283767844	0.381090816001537	0.496906747760692	0.833355041868306
Merged-chr6-30303992-2	chr6	30303477	30304477	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_009459, intron 1 of 6)	CpG	562.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	8.79941730958815	8.4198405774321	8.12090528449426	8.68289602701927	8.35127502177431	8.16222971754586	-0.0873272583749087	0.748809341549081	0.937087780077821
Merged-chr13-100103485-2	chr13	100102985	100103985	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081061, intron 1 of 38)	intron (NM_001081061, intron 1 of 38)	585.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	6.27623744803032	6.48863847407877	6.24860803781542	6.53052890251807	6.62440051363442	6.48414255679251	0.329598158556112	0.224916503500244	0.619819002536735
Merged-chr15-78254975-3	chr15	78254475	78255475	+	886.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 5 of 9)	intron (NM_008677, intron 5 of 9)	10164.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	2.94813675398483	2.8970550316967	2.9547892140447	2.82028887256013	2.72916308409788	3.02678735252393	-0.371363613710693	0.598576186190325	0.880808927175713
Merged-chr2-66186348-2	chr2	66185848	66186848	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 27 of 28)	intron (NM_001047604, intron 27 of 28)	-61555.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	3.228456277688	3.30067620209565	3.38664594702557	3.29123062805697	3.10916552181136	3.05074565668907	-0.617415114333096	0.334493728171219	0.724994313317866
Merged-chr9-14884834-4	chr9	14884355	14885355	+	991.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176807)	TTS (NM_176807)	19096.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	4.11308013913441	4.29081308937485	4.3640110995545	4.07708351624944	4.19942036203645	4.06889024926881	-0.372067342988144	0.432235671281257	0.797270167804312
Merged-chr1-136684864-2	chr1	136684364	136685364	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1235.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	7.37441435597011	7.46098407904386	7.35607221484813	7.60237738755194	7.66300152571339	7.52857105562814	0.296739177705157	0.182693381276542	0.565521995170527
Merged-chr4-154930328-2	chr4	154929833	154930833	+	762.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.94240889703397	5.82976223992471	6.36947019884455	6.3976013109538	6.43262113132049	6.62916660471473	0.720075888392372	0.0187231817507812	0.154816506719567
Merged-chr4-6373127-4	chr4	6372635	6373635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	7455.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.89173051040379	8.23197710929256	7.6312627320506	7.90206668157436	8.37280472046029	7.32005990834013	0.000406766240917951	0.99900976470528	0.999850904539403
Merged-chr9-53390395-3	chr9	53389898	53390898	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	6375.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	4.80183069246475	4.44081086858715	4.59856544474422	4.70035286870823	4.80644852783	4.66551519655074	0.25005670667935	0.550560930023146	0.860709619458349
Merged-chr19-43723624-4	chr19	43723133	43724133	+	968.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 9 of 12)	intron (NM_053103, intron 9 of 12)	29367.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	3.63039719903589	3.36524329946498	3.3164492874677	3.66699230786008	3.5388474841154	3.44932945183418	0.386326315886388	0.517926062097091	0.844849793679631
Merged-chr2-18649008-4	chr2	18648446	18649446	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23516.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	4.26907382438668	4.14311886109676	4.09589818769875	4.87567220176208	4.54541126365179	4.06064616469415	0.9499318637667	0.0613967458342153	0.321342334090664
Merged-chr11-96064592-1	chr11	96064092	96065092	+	570.0	f0_balb.idr	intron (NM_172300, intron 1 of 6)	intron (NM_172300, intron 1 of 6)	772.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	5.36519637038961	5.34501340609394	5.6934948712323	5.75175223591347	5.11826060631964	5.65382108605236	0.114322050680539	0.763751945513767	0.941804973525244
Merged-chr6-122870120-4	chr6	122869628	122870628	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	5.11895156548228	5.46170337622857	5.51929553898423	5.13843503337221	4.99818153272969	5.26411097227302	-0.494327919861734	0.179787835960769	0.561300699933349
Merged-chr7-104370318-4	chr7	104369805	104370805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11659.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.88993149428219	7.07398566130543	6.86765562290346	6.77758953829462	7.06145612886153	7.00976980422572	0.00896873031376221	0.971897396977361	0.993850787854151
Merged-chr18-35573537-3	chr18	35573031	35574031	+	706.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 2 of 14)	intron (NM_010771, intron 2 of 14)	11373.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	4.3117575331726	4.37278899291232	4.55812604609693	4.45023522509623	4.47748169580674	4.69871149942683	0.32785491921683	0.45218833371007	0.809286173636239
Merged-chr8-53434449-4	chr8	53433976	53434976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-77226.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	3.01813428962185	3.31914040136571	3.22413619950098	2.97744969807693	3.10487781846151	3.29508644341459	-0.279595276086756	0.674540617903816	0.911852710156386
Merged-chr2-92007770-3	chr2	92007304	92008304	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	16366.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	3.74697552694003	3.71545390352384	3.71781641157448	3.55882172954374	3.16070089868228	3.63343054424236	-0.962662317863417	0.113940016795907	0.450859089500984
Merged-chr5-88563046-2	chr5	88562547	88563547	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1993.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	3.33064974000607	3.36057113735043	3.40061146828599	3.42007711254753	3.56689555901114	3.63100655310433	0.668793667219792	0.250730261681198	0.648153521953385
Merged-chr13-23454138-3	chr13	23453645	23454645	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11756.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	5.03916718696087	5.13160202663306	5.65240751647	5.53579519355166	5.52690924339688	5.55838256009787	0.491751869202272	0.183755705588193	0.567117371996399
Merged-chr4-11480199-4	chr4	11479687	11480687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5771.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	4.0252165147235	4.14182451870064	4.39497507000924	4.39171857398558	4.41304853187069	4.37727073590427	0.562988574253281	0.222483862963633	0.617451713343938
Merged-chr14-72594119-2	chr14	72593625	72594625	+	852.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	115878.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	4.73048123779062	4.96315241155499	5.08967140038258	5.10363386646556	5.0403424832777	5.39458134526486	0.529934183694197	0.171110259120429	0.549054232994131
Merged-chr9-71179495-4	chr9	71178999	71179999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	MIR|SINE|MIR	10723.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	3.61342068066141	3.58051153669427	3.85504821526524	3.90126833949771	3.87525749786705	3.82498526682537	0.620754841449844	0.243545298123289	0.640776628186919
Merged-chr7-66110025-4	chr7	66109516	66110516	+	893.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081163, exon 1 of 3)	exon (NM_001081163, exon 1 of 3)	501.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.74646146578942	4.47134165849446	4.35790598635435	4.585249895432	3.99613751619035	4.42654580446542	-0.470391410706035	0.337750428060478	0.727637356447098
Merged-chr13-43448591-2	chr13	43448091	43449091	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 2 of 13)	PB1D7|SINE|Alu	32382.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	3.90205008867131	4.03682320426131	3.95616354946883	3.57855238129497	3.63112559495034	3.61245933469901	-1.18538550761752	0.0269683093235429	0.19557151161254
Merged-chr5-140390006-2	chr5	140389506	140390506	+	740.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	-698.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	4.79126857591943	5.00049354399483	5.16262320489297	5.12440940428776	4.93600786791549	5.06234702276475	0.116812782907848	0.75980155686389	0.940572672765463
Merged-chr1-95657408-4	chr1	95656891	95657891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10203.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.67223118046589	6.88752845543963	6.44291840307554	6.56659294270315	6.90758839758098	6.2539971674858	-0.1090976916135	0.726210304818171	0.92976141932693
Merged-chr3-87561749-4	chr3	87561257	87562257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36179.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.2060269333143	5.11704185089019	5.07766102042976	4.6748494307095	4.69866329721376	4.41385105290824	-1.16951295860663	0.00374747117279134	0.0495369091142398
Merged-chr4-116821650-4	chr4	116821167	116822167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-159.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	3.77110000451414	3.55782155051533	3.6436028625029	3.76408877889761	3.35882663226131	3.66133231314677	-0.208189986107404	0.719883261642699	0.927960661644538
Merged-chr13-9874175-4	chr13	9873674	9874674	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108853.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.87283458929129	6.79331217760151	6.63992684407518	7.01252873612509	6.77792661611514	6.97163087987758	0.218720165732416	0.392971988295587	0.771425512588747
Merged-chr7-35741073-3	chr7	35740563	35741563	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	B3|SINE|B2	13391.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	4.42035694173768	4.4885831048415	4.56309708950234	3.48117225379791	3.4048442182719	3.7758313876515	-3.18697148628322	7.03533120737743e-08	5.19428428663231e-06
Merged-chr9-106247894-4	chr9	106247374	106248374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	80.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	6.89767899260954	6.76125820688955	6.51978645585682	6.96045333362813	6.67415008343483	6.50475368727496	-0.0179092807297302	0.949478879240017	0.988195309248553
Merged-chr17-17064018-4	chr17	17063517	17064517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005358)	promoter-TSS (NM_001005358)	-86.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	4.33414421974811	4.48317804487413	4.31641422642789	4.51893256462545	4.25699942223379	4.29261820926011	-0.0609765038258056	0.892272155591881	0.975049662776966
Merged-chr6-22423693-3	chr6	22423149	22424149	+	974.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67568.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.90142709846289	3.53029869015405	3.66838872961929	3.75345513907056	3.52593207299477	3.57553035420324	-0.307666115731715	0.589168910421915	0.876753289776615
Merged-chr15-81853098-2	chr15	81852598	81853598	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	5228.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	2.85423257560568	2.46597302803451	2.84619564448532	2.55274891413747	2.42789010477879	2.61519281494543	-1.14904000458013	0.158586659963651	1
Merged-chr3-95995607-2	chr3	95995107	95996107	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023320, exon 2 of 6)	exon (NM_023320, exon 2 of 6)	232.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	6.86446861333349	6.88990968662871	6.80320991736181	6.91819838489216	6.9821958325144	6.66863349081339	0.0270929589068683	0.915067826290037	0.980959026698783
Merged-chr14-19707513-3	chr14	19707000	19708000	+	789.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43757.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.08456156796534	3.96158689286733	3.94829311862666	3.61275654416973	3.5460496842143	3.87092029532744	-1.06801649704455	0.0465941296664809	0.273105405838866
Merged-chr4-46138640-4	chr4	46138174	46139174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173033)	promoter-TSS (NM_173033)	35.0	NM_001355376	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	7.61502959779577	8.22460115409358	7.96345630640284	7.9784604552067	7.85275352888448	7.69675400160259	-0.157968807181095	0.541931523186446	0.857018905554292
Merged-chr4-149415978-3	chr4	149415475	149416475	+	795.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	10656.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	4.08756999811418	4.06865926340464	4.343702868254	4.01154814483847	3.58615393600789	4.11161305459045	-0.750258818256253	0.163607235779325	0.537647883161994
Merged-chr7-110260111-4	chr7	110259616	110260616	+	772.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	intron (NM_009302, intron 3 of 11)	38413.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	6.1246811616212	5.96168749658738	5.77453781720007	5.93572439541366	5.75599775189056	6.23826722078977	0.0184618940364485	0.954517896254018	0.989606357454991
Merged-chr13-34149266-3	chr13	34148794	34149794	+	620.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13670.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.91275379516301	2.83440396226941	2.92352986803519	3.02308539957399	2.72301190356388	3.1685256528379	0.420241802971313	0.558286855782189	0.864597008988151
Merged-chr11-115638049-2	chr11	115637549	115638549	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9754.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.01760642735839	4.21942171300831	4.06700435779029	4.24917867622009	3.93534748646055	3.93493908783345	-0.166607571625721	0.738521676512918	0.934032187674406
Merged-chr5-3509688-4	chr5	3509207	3510207	+	789.070801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-34126.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.25200783721766	3.14176021370679	3.00580386256562	3.29506810806506	3.14912741848775	3.26051964371439	0.385811817562685	0.550534022217441	0.860709619458349
Merged-chr5-33822655-4	chr5	33822153	33823153	+	757.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20459.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	3.34949402377174	3.34910812085432	3.44547402833977	3.62903322745152	3.2280347444599	3.62177204224495	0.450385771720079	0.461154576296299	0.814940478468229
Merged-chr1-152604433-3	chr1	152603933	152604933	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	20784.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.03052766628765	4.73688655423694	5.07781602213752	4.78916790610761	4.74112541369457	5.14120926489374	-0.132538408575009	0.744114116000495	0.9358862398815
Merged-chr14-79483430-2	chr14	79482930	79483930	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	B3|SINE|B2	-2162.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	4.47172954324069	4.87146237443342	4.88836710285522	4.23495596140239	4.29281211379641	4.22672476825556	-1.2538608013402	0.00582189993641275	0.0682389984376718
Merged-chr11-44435928-3	chr11	44435433	44436433	+	591.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34615.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	3.07744355977015	3.52469877607906	3.28646155353191	3.51626384122333	3.45932065923902	3.41678274299474	0.576611880128409	0.36421561293605	0.749666877743191
Merged-chr8-84913443-7	chr8	84912752	84913752	+	937.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103491)	promoter-TSS (NR_103491)	-83.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	6.20529233446237	5.77932388282234	5.9643087098152	5.89310224971313	5.73768486462835	5.83215897541503	-0.312419980915853	0.322173616274609	0.715589724600332
Merged-chr5-137307689-4	chr5	137307153	137308153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031405)	promoter-TSS (NM_031405)	21.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	7.31604066978428	7.42134428657595	7.19918703740682	7.34312628684013	7.30263494090261	7.29214229736343	-0.0115574670863741	0.960101473601145	0.990335445597503
Merged-chr15-95794439-2	chr15	95793936	95794936	+	652.5	f0_balb.idr|f0_c57.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3593.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.37709473394214	7.38136883404897	7.38063276043305	7.33867169104554	7.56411246281026	7.24412743906151	0.0274823438255498	0.90733638959571	0.978893925942884
Merged-chr12-4164997-3	chr12	4164485	4165485	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	30832.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	3.97400848192443	4.10865631540175	3.98387942720057	3.59779167031828	3.29869716287652	3.58912229789085	-1.85005036214581	0.00126195309919752	0.0215851962777009
Merged-chr8-105937106-4	chr8	105936596	105937596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013640, intron 4 of 7)	intron (NM_013640, intron 4 of 7)	1296.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	5.71165853830634	5.54501186362319	6.06272837317199	5.69935358588828	5.85661807054893	6.14283998525556	0.225331891101253	0.507815729605841	0.839478905492168
Merged-chr9-18468247-4	chr9	18467747	18468747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028160, intron 4 of 7)	intron (NM_028160, intron 4 of 7)	5312.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	4.22596935304758	4.10136635242813	4.40661486295703	4.00629341080228	4.08040145952355	4.30783084539115	-0.313293538312429	0.514955294794116	0.843323036651554
Merged-chr11-53776421-2	chr11	53775921	53776921	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 10 of 10)	exon (NM_001159396, exon 10 of 10)	5948.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.04661624226146	3.8670530832993	4.79434567210482	4.27748169210075	4.28441548238476	4.20969235688454	-0.0975452568460539	0.859900449286936	0.967435965660262
Merged-chr8-70807399-2	chr8	70806872	70807872	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1077.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	4.80746014799815	4.75659442231367	4.88787936868356	4.83269073800434	4.82388137796382	4.50793249708812	-0.168172060991493	0.678900968053102	0.913553914280182
Merged-chr5-43862353-2	chr5	43861853	43862853	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6456.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.46605577017311	3.54092222070267	3.725790860085	3.52894032404817	3.55123388363986	3.79368192937806	0.169553636467036	0.765189255813695	0.942137701159565
Merged-chr1-184908741-3	chr1	184908297	184909297	+	852.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145515, intron 13 of 17)	intron (NM_145515, intron 13 of 17)	-25761.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	3.42929193759954	3.39446087374969	3.4369777041628	3.31876929835126	3.3665718553997	3.61174862720086	0.0458778529707505	0.938229219121388	0.986299125216244
Merged-chr2-167761007-3	chr2	167760530	167761530	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69853.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.28150550375729	8.64652571713251	8.64149512102388	8.37038394973987	8.51852188634137	8.17442992265937	-0.230798573068912	0.322167637408558	0.715589724600332
Merged-chr13-108013291-4	chr13	108012785	108013785	+	878.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31189.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	2.86546608049352	2.66150536770798	2.95690714356722	2.76642116064898	2.8110388395326	2.91230524614373	-0.00141185568851249	0.998439463061811	0.999665481732462
Merged-chr7-145112600-4	chr7	145112097	145113097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95522.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	7.93218454064407	8.16624255158602	8.01460230962123	7.97582505140486	8.36990366672442	7.72392101026699	0.0271616672335995	0.916359373905365	0.981243905880233
Merged-chr18-36563775-2	chr18	36563275	36564275	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	intron (NM_175375, intron 1 of 33)	3172.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	3.49154220953602	3.14144675881911	3.33807148191197	3.38401835287829	3.20921604703728	3.23648796379995	-0.214669027585084	0.733983644037689	0.932325051544019
Merged-chr19-26605054-4	chr19	26604544	26605544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-116.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	6.64679953923274	6.72430678006184	6.69721649244984	6.6314887009084	6.75142878025535	6.98513980097415	0.158533231928748	0.542996935207488	0.857468369859798
Merged-chr8-46149929-1	chr8	46149429	46150429	+	590.0	f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-13722.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	3.64993954543757	3.88572583612088	3.65430694542576	3.80722637583109	3.82804093366048	3.88127714914649	0.314016315842938	0.555426962974526	0.863239342468185
Merged-chr17-23844073-3	chr17	23843579	23844579	+	997.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027644)	promoter-TSS (NM_027644)	77.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	2.42761984805426	2.65136395718296	2.69281754587232	2.29951765990959	2.22077146211483	2.39148222437943	-1.99060780554867	0.0245873068397546	1
Merged-chr12-51693021-2	chr12	51692521	51693521	+	871.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	B1_Mm|SINE|Alu	-1107.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	6.36877781121885	6.91007984623615	6.64396729181847	6.81795566387691	7.07787441554016	6.79886259239207	0.384040579927716	0.182247815274717	0.564974338265291
Merged-chr9-42141769-4	chr9	42141266	42142266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17469.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.90054989718361	3.86768219448963	3.62043135780739	3.86486295150058	3.6061047340339	4.04634919834903	0.110013959065654	0.842854939569633	0.963201849568639
Merged-chr11-76179715-4	chr11	76179209	76180209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026664)	promoter-TSS (NM_026664)	-79.0	NM_026664	68299.0	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	4.74378365254025	4.97530380772505	4.81077152291904	4.96691991907098	4.82003757842915	4.98628272415703	0.155661085245507	0.688408376085831	0.917216444209858
Merged-chr2-61512253-4	chr2	61511760	61512760	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-66326.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	2.47286180135803	2.59322723431868	2.46961369044256	2.66817230947649	2.39914915531897	2.67224916312218	0.389363009034144	0.626445042922899	1
Merged-chr1-177983256-4	chr1	177982773	177983773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8125.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	6.96086940576154	7.00088375416396	6.8471422000136	7.13885520575958	7.21378153857682	6.6606687895363	0.149654337453997	0.583773688154116	0.874225271981634
Merged-chr12-32340654-3	chr12	32340181	32341181	+	751.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38108.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	4.3081069482212	4.40615947562427	4.38517366497015	4.65671927154143	4.53011431198715	4.5383719950864	0.530627949165637	0.214304153422819	0.607446165658035
Merged-chr15-85042737-4	chr15	85042230	85043230	+	774.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356616)	promoter-TSS (NM_001356616)	-12.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	4.04273191116834	3.96514256340559	4.10993035741239	3.84735573583555	4.05344911006751	3.9895112224015	-0.200484251347859	0.685941764034466	0.916538830253462
Merged-chr11-120797313-2	chr11	120796813	120797813	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-918.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	3.97781511447708	3.69742922314151	3.92278808181279	3.79492625569117	4.03155540080047	3.78913730443482	0.0492367427663005	0.92615116834257	0.983325078671029
Merged-chr9-37657264-4	chr9	37656773	37657773	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025289)	promoter-TSS (NM_025289)	39.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	5.63163798961502	5.6569574346924	5.5723895851859	5.19119145214162	5.29275602831203	5.05773368251235	-0.834230922156668	0.0144865121339267	0.12955650275578
Merged-chr2-166716463-2	chr2	166715963	166716963	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.14112673447523	3.9438265255424	3.7290447279966	3.75477680537075	3.55666133742204	3.74633289407278	-0.881698116992041	0.10690749987998	0.436454439973323
Merged-chr3-62507021-4	chr3	62506507	62507507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028136)	promoter-TSS (NM_028136)	-19.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	6.88165611556137	6.39633708660043	6.0974677385107	6.719425879751	6.18980549406206	6.13562008769446	-0.209317728979955	0.552962938097566	0.861983853430146
Merged-chr9-83554001-4	chr9	83553494	83554494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	5656.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.69341264811491	5.18293796432062	5.53025317499139	5.41376023118504	5.38474761398895	5.32470009679044	-0.209370770090201	0.55864547011016	0.864744077984264
Merged-chr11-115475181-2	chr11	115474681	115475681	+	823.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-486.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	5.11885321095585	5.05906088239684	5.41126374167364	5.36630368694475	5.27526367761821	5.26348090922013	0.222578944617781	0.533041175576809	0.852144904559072
Merged-chr4-141528587-1	chr4	141528087	141529087	+	678.0	f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	B1F2|SINE|Alu	10010.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.67734205378065	2.69729561622432	2.61377334893719	2.80386837495558	2.67107387304197	2.81304808974787	0.514610556751298	0.48534004090578	1
Merged-chr11-86806485-2	chr11	86805985	86806985	+	789.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026191, exon 2 of 18)	exon (NM_026191, exon 2 of 18)	1175.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	3.3313192154452	3.24548237496418	3.37877495688939	3.07630029003305	3.17506886612011	3.11016479266701	-0.821194991653944	0.196250490135173	0.584055609398314
Merged-chr11-5542291-4	chr11	5541780	5542780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-63.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	6.96343842017616	6.87874848071907	6.64265909063245	6.90713689911338	7.26474657334886	6.71900261003179	0.237245153582295	0.401432662070746	0.777559684938373
Merged-chr7-141447272-4	chr7	141446773	141447773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-378.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	7.46948480890981	7.72409558964146	7.15734399389692	7.72975436751939	7.82732928501999	7.18868656728495	0.205452493116964	0.479743927780162	0.824388351219109
Merged-chr2-38520102-4	chr2	38519622	38520622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	8246.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.03592946941151	3.73796071567264	3.64038039896578	3.41530874875632	3.24181584293194	3.6582621798733	-1.36069939091464	0.0249785759324418	0.186874424221059
Merged-chr13-9139771-2	chr13	9139271	9140271	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 5 of 17)	intron (NM_172585, intron 5 of 17)	45890.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.32676385872519	3.31800746741427	3.37980697985208	3.33447598989761	3.12501603097164	3.22424643711296	-0.458083932042851	0.458015180205977	0.812780596083952
Merged-chr13-55213112-2	chr13	55212612	55213612	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	intron (NM_008739, intron 1 of 22)	3330.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	5.97493824889046	6.03010031877344	5.96444604230456	6.07336566280865	5.95026755239254	6.31651107449853	0.204766712959224	0.491913417153873	0.830829065918357
Merged-chr2-6478498-4	chr2	6477994	6478994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125758.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.25208123492121	7.52475435278222	6.98206490312648	6.82558112713512	6.7381519941328	6.85123197041359	-0.72808344699767	0.00622483293026913	0.0716497300403698
Merged-chr5-32137339-4	chr5	32136850	32137850	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	878.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.95918837894384	7.12955633152562	7.32558231234143	7.29981426203516	7.28026673673906	7.70269632519098	0.438664321715657	0.0962919675508017	0.413664207546446
Merged-chr13-5605077-4	chr13	5604575	5605575	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253017.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.86979654249199	6.99232966012295	6.80363046086613	6.29140240268325	6.63375555989179	6.62573657835711	-0.577023686391774	0.0317952295854981	0.216251223095482
Merged-chr15-64068510-3	chr15	64067972	64068972	+	851.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8024.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.10953476886157	2.295395117154	2.31594914903601	2.05041603498117	2.07811253232889	2.06028691450761	-1.34963751242365	0.145156839083922	1
Merged-chr13-113013496-4	chr13	113012930	113013930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19562.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	6.20235544110445	6.58550825929969	6.2036709437497	6.50635136638785	7.07637499536758	6.37036239943662	0.564473485108553	0.0865548655190689	0.389700624972171
Merged-chr8-70620363-2	chr8	70619863	70620863	+	812.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	3519.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	5.09854602337241	4.87450461211061	4.98751159840629	5.15596247021008	4.95239964893464	4.90515731528584	0.0449840869595819	0.905512130529358	0.978390512363158
Merged-chr2-124666139-2	chr2	124665639	124666639	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	12558.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.09836328459869	4.07966990031704	4.05498169464411	4.1209950516226	3.84342064868564	4.12353568758478	-0.149969490794081	0.760961352609035	0.94105384427934
Merged-chr7-55869407-4	chr7	55868905	55869905	+	953.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	ORR1B2|LTR|ERVL-MaLR	27334.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.65560960400011	5.13320955281888	5.73013437285048	5.82672187733179	6.29416767926315	6.28945970848623	1.12055815188372	0.00187007073617918	0.0293317334243162
Merged-chr17-34643549-1	chr17	34643049	34644049	+	609.0	f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	4.90819280720959	4.84086433185897	4.83613928929344	5.15493633289668	5.43545365917461	4.78038001362529	0.64823237692478	0.109856800770269	0.443094427298972
Merged-chr11-6628741-4	chr11	6628231	6629231	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2664.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	4.19559581851532	4.11670016573526	4.47593895777145	4.25008792079331	4.47007205321605	4.9614683815867	0.81595336467505	0.0977287415718651	0.416925964185171
Merged-chr1-171328241-2	chr1	171327741	171328741	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011615)	promoter-TSS (NM_011615)	-567.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	6.918132672906	6.7213969560892	6.26840826988506	7.73015867876684	8.02905978246388	7.32135485748346	1.57516460941414	5.76372560966181e-07	3.33278721701696e-05
Merged-chr3-83812165-4	chr3	83811657	83812657	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29451.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.28812171442814	5.3796341507849	5.19171064869179	5.30108989678541	5.2060326720339	5.04440509777468	-0.202575995398425	0.567367507763585	0.867939797427831
Merged-chr3-52000230-4	chr3	51999692	52000692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	104814.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.55327508783268	4.3907008243638	4.41348034214322	4.55387254919216	4.28226202836714	4.09836243054891	-0.32301069943664	0.486059625999416	0.827641640456729
Merged-chr4-143213258-2	chr4	143212758	143213758	+	982.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	-549.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	7.3046599188203	7.39941217338326	7.32122590949253	7.39541127510289	7.27937274965697	7.29943468615503	-0.0271958715391949	0.904795961772051	0.978165789675139
Merged-chr5-65326358-4	chr5	65325855	65326855	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	9284.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	6.57439471307982	6.48399861932005	5.97946171281006	6.82958961507633	7.06318531804328	6.28382404343093	0.626156188230842	0.0667072912810166	0.337507032189311
Merged-chr12-71050147-2	chr12	71049647	71050647	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	34180.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	3.27190983902364	3.23915527031241	3.26687827145847	3.23907192270793	3.14583843032367	3.10318999502758	-0.395032846931807	0.528944516586467	0.850598716803661
Merged-chr3-103786402-2	chr3	103785902	103786902	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	4873.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	3.34507483027569	3.20587228704493	3.23100002013934	3.39117467388985	3.21629240883113	3.46872420270235	0.375087561220924	0.543004427496968	0.857468369859798
Merged-chr13-59847762-4	chr13	59847261	59848261	+	935.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-24614.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	2.49700238354002	2.5638065493317	2.72412331455588	2.64341447102949	2.6241898446867	2.67494660972519	0.299442786400352	0.693011528487478	1
Merged-chr7-121986065-2	chr7	121985565	121986565	+	684.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028758)	TTS (NM_028758)	-4372.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	2.73661222874128	2.72994837290871	2.89864873262791	2.85694391658475	2.96871121876735	2.78807925175698	0.468613413172944	0.512470501796781	0.841971478201334
Merged-chr14-75025564-4	chr14	75025073	75026073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	9546.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.68034437888069	5.85179272001227	5.78884108130365	5.69846041812339	5.57498263880604	5.49364385940301	-0.331797418511427	0.293936784974504	0.690457148203017
Merged-chr4-149663195-2	chr4	149662696	149663696	+	704.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164052, exon 1 of 22)	exon (NM_001164052, exon 1 of 22)	120.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.00647234155247	3.86303015577466	3.90465771781115	3.57245466440771	3.64329047971626	4.06560610509937	-0.502302772475338	0.361469177329138	0.747407752550801
Merged-chr17-64559238-3	chr17	64558735	64559735	+	701.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3645.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	2.04231842929417	2.07708010450039	2.27410309182214	1.99464337747254	1.76521563643662	2.02204455348434	-1.72272562212034	0.10129572125084	1
Merged-chr9-25541564-4	chr9	25541078	25542078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RLTR53_Mm|LTR|ERVK	59981.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.85446942980359	3.64925922677868	3.66500548728287	3.74950269459356	3.68662400677204	3.32378363950462	-0.40955364271758	0.490033047494776	0.829980359087456
Merged-chr6-113714507-4	chr6	113714012	113715012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3180.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	5.77848448553936	5.67424610610293	5.56544726484877	5.52865968638496	5.4583006057928	5.25125261006514	-0.480589158005944	0.147365573290319	0.512227670074211
Merged-chr11-62648436-2	chr11	62647936	62648936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	87.0	NM_198861	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	4.37042216886994	4.05687024326988	4.37362273615409	4.47832986177705	4.10426119643034	4.16988886432821	-0.0281030236083621	0.953766969372858	0.989446911725587
Merged-chr2-27320166-2	chr2	27319666	27320666	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-72863.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	2.83497929089416	2.94259080271136	3.14399146741675	3.05528175945611	2.54530867541565	2.98816689943264	-0.448889037734018	0.566644270104295	0.867529051626308
Merged-chr15-50887911-2	chr15	50887411	50888411	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	1138.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.81673675362487	6.95860826040747	6.5656738834989	7.25514888383454	7.24174283986062	6.73133737139487	0.471935917505402	0.0985773901706073	0.418682925403373
Merged-chr9-62811830-6	chr9	62811331	62812331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-183.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	8.39520215092787	8.55635463835015	8.20319706128917	8.17895333574347	8.2504343314423	8.04090327747715	-0.328329068671489	0.13853555749433	0.497422398722197
Merged-chr15-79324792-2	chr15	79324292	79325292	+	789.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	3579.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	3.62383492049437	3.30919216261379	3.31517462107811	3.43372636328464	3.26701766224192	3.55363176781044	-0.0437405507799667	0.943367191366104	0.987377570608805
Merged-chr7-128227083-2	chr7	128226583	128227583	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10274.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	4.05757767625287	4.08685676351167	4.13217235089883	4.14972882698226	3.91060667083827	4.24457967792792	0.0250516284257428	0.959026181899987	0.990174309444982
Merged-chr9-48547468-4	chr9	48546968	48547968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52125.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	6.10957724450343	6.09365810902934	6.10922775553964	6.30076591650778	6.20157226686118	6.21224335787103	0.227913156582856	0.411082863964427	0.783840094880781
Merged-chr8-88666556-4	chr8	88666061	88667061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19214.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	7.01900971038367	6.62500674329627	6.69565776123114	6.9686914647288	7.35191510720819	6.75477651262599	0.407407749266537	0.166283053956741	0.541508369677607
Merged-chr11-69366630-4	chr11	69366132	69367132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2794.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	6.60062852772471	6.45059212127994	6.54108291312848	6.90707278517746	6.9285419353591	6.94123448746712	0.617708361658478	0.0136009811983766	0.124363785005991
Merged-chr17-70993589-4	chr17	70993086	70994086	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357820)	TTS (NM_001357820)	-3070.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.30596060530609	6.81371710236556	6.60506697324534	6.58099703096504	6.80222934668269	6.17491316845138	-0.0565123741341515	0.858863532008357	0.96702230262239
Merged-chr1-42866188-3	chr1	42865699	42866699	+	910.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023514, intron 2 of 10)	RLTR9A3|LTR|ERVK	14966.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	2.93165690449186	2.88466617363318	3.2190487510305	2.86746184148917	3.0018156637046	2.82542301043776	-0.51169478979598	0.47203884404631	0.820450110404725
Merged-chr19-46698353-4	chr19	46697858	46698858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	8452.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	5.4355020025287	5.32891927882343	5.21554966509271	4.99249834440887	4.77398343246909	4.88910705155788	-0.950038809839876	0.0097756676840667	0.0989535319480711
Merged-chr6-127239062-2	chr6	127238562	127239562	+	606.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	68905.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	2.3961954999945	2.42280349723369	2.28071821719355	2.42002052126644	2.31827952767606	2.61324436114896	0.502997187636763	0.547390422049432	1
Merged-chr5-138683231-4	chr5	138682761	138683761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60402.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	7.16934640404145	7.56048467847396	7.48394348053802	6.79228212767059	6.99985131141348	7.13843361622154	-0.650227004725239	0.0126099172876061	0.11832839943083
Merged-chr7-116603356-4	chr7	116602847	116603847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	98978.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.463801103675	5.62921375996155	5.55116189455773	4.99477468430097	5.16114739834494	5.35574197240383	-0.748718423217456	0.0319238795489496	0.216754154998694
Merged-chr10-13962547-2	chr10	13962050	13963050	+	970.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3525.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.87752079196015	2.7016816553008	2.92061690092848	3.01953003162038	2.93467731536861	3.10975912407088	0.905014881104972	0.196564690324062	0.584426311458749
Merged-chr3-121170823-2	chr3	121170323	121171323	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028456, intron 1 of 4)	B3|SINE|B2	872.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	4.14210670368295	4.47990226606732	4.12590619446279	4.01272067256093	3.8202266753311	3.94641662775096	-0.992847173855874	0.048098024891597	0.278061589326756
Merged-chr13-6547493-2	chr13	6546993	6547993	+	824.083313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-664.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	2.94900499061243	2.99670954215729	3.26085461264102	2.9535551316832	3.01386552517648	3.2238199469679	-0.0238394373247893	0.971924916174368	0.993864490395142
Merged-chr19-45896164-2	chr19	45895664	45896664	+	682.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 20 of 25)	ID_B1|SINE|B4	-80101.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	3.07993640775857	3.52584303172714	3.04846092427032	3.17801089340983	3.18849058974286	3.41396348336057	0.0675317104772654	0.921034184350621	0.982480847360633
Merged-chr14-33185199-4	chr14	33184713	33185713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-147.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	8.25094915335628	8.71946517649573	8.12116358762806	8.3126493574872	8.34692375464944	7.96574980820879	-0.240982414664101	0.357878899351615	0.744420985799234
Merged-chr4-9643168-3	chr4	9642675	9643675	+	982.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	542.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.42555010884072	6.42946891349987	6.50064875645074	7.31269004865179	7.67813500558739	6.85109695245477	1.36224598344767	5.11181590444524e-06	0.000225766442556836
Merged-chr2-178506230-4	chr2	178505721	178506721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75706.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	3.75395338011668	3.8029984020729	3.77390475304945	3.40230886059991	3.34127605109197	3.53051993103524	-1.29908376263605	0.0225906565837446	0.175053394768134
Merged-chr17-48409885-4	chr17	48409401	48410401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357904)	promoter-TSS (NM_001357904)	-81.0	NM_010913	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	7.49845775848137	7.87216446018592	7.79304742369982	7.532003148032	7.74407747056197	7.53305479669307	-0.172477583201816	0.474364154834208	0.82139231300766
Merged-chr11-3930202-4	chr11	3929709	3930709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1752.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	5.51006991755847	5.47067461183945	5.45410774459151	5.20584507087063	5.31639107767721	5.33626326701767	-0.378160231679453	0.258086024359635	0.65554518843855
Merged-chr6-108657583-2	chr6	108657088	108658088	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	(CAGG)n|Simple_repeat|Simple_repeat	-3041.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	5.5394506712095	5.43483249513266	4.99382595853095	4.55998830084408	4.4857590932299	4.65846847066081	-1.74936491016346	1.6594950204527e-05	0.000621157272432877
Merged-chr10-77974920-4	chr10	77974423	77975423	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3727.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	5.92159133863179	5.92353927815794	5.96226533022197	6.30771277302472	6.21437448170191	5.95131087399024	0.413194083678251	0.160971884927291	0.533655406039239
Merged-chr15-61986176-4	chr15	61985676	61986676	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	835.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	7.21445995550744	7.46602358913382	7.35813520608946	7.37089618277105	7.47233075784123	7.38273774750554	0.089800565750697	0.699536439624127	0.920619136555148
Merged-chr12-84114311-4	chr12	84113804	84114804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346528)	promoter-TSS (NM_001346528)	-24.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	3.62096432871512	3.5765429397969	3.35684994572514	3.67455726620296	3.35778816715742	3.70534811794296	0.190980578792633	0.748891622554291	0.93711275444937
Merged-chr11-101008286-4	chr11	101007796	101008796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	6.76959697215937	6.81246291041629	6.45633468809608	6.72795530837576	7.02313548788675	6.41758845414697	0.0996860638249833	0.737758527844692	0.933858424870961
Merged-chr14-79480346-2	chr14	79479846	79480846	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-848.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.45747290543887	5.25547501499655	5.347066241127	5.68250895719761	5.11937009003039	5.21554903896701	0.0158143051724783	0.966352300927437	0.992302763946523
Merged-chr7-34348445-3	chr7	34347952	34348952	+	751.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 9 of 10)	intron (NM_025948, intron 9 of 10)	41253.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	3.8313620556661	3.68634007835133	3.94408690897155	4.16323617353132	3.84548562340302	3.91468402939242	0.501933452743858	0.337218335087096	0.72716881918592
Merged-chr11-102295489-4	chr11	102295028	102296028	+	662.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 1 of 12)	intron (NM_001098836, intron 1 of 12)	1101.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	5.83904987728591	6.10930828107888	6.17685712590141	6.08872707569521	5.96443026677201	6.3513343699389	0.153301408659683	0.619475255432447	0.889785897704524
Merged-chr8-46686941-4	chr8	46686426	46687426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M6|LINE|L1	52589.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	6.62352075068282	7.31778884782967	7.04763681365456	7.07626770923494	7.25515679963075	6.85125188393261	0.0716693484397622	0.810571821964061	0.955054272231421
Merged-chr10-80321138-4	chr10	80320690	80321690	+	945.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-642.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	5.14733387312449	5.45760719887716	5.38804752808933	5.89243297854231	6.02912467420141	5.7129254579969	1.03498024090767	0.00192834615800701	0.0300587911418973
Merged-chr3-27269432-2	chr3	27268932	27269932	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47645.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.15193668800967	3.86640862407764	3.82746359594403	4.54622992946154	4.16602513344662	4.06159622536614	0.888204119018734	0.0880465652893042	0.393677438925061
Merged-chr19-37374957-3	chr19	37374452	37375452	+	816.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1451.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	4.04653236056966	4.33200004159199	4.3430586512	4.39007113761706	4.92360096104952	4.84499227051893	1.2420027875719	0.00801055210017943	0.0861833487395565
Merged-chr5-34514892-2	chr5	34514392	34515392	+	803.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-913.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	4.86909517544731	5.20839068334635	4.97092849143414	5.07964711818694	5.01187814131746	5.41550977693776	0.29480900183506	0.448576041700019	0.807277523678988
Merged-chr9-100711121-3	chr9	100710619	100711619	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 2 of 33)	intron (NM_009282, intron 2 of 33)	67671.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	3.23977008312904	3.36638943025117	3.57834389670342	3.21161849533284	3.14745596403196	3.15998550737292	-0.912035038243987	0.149873243977033	0.516435278990118
Merged-chr8-88690508-1	chr8	88690008	88691008	+	704.0	f1_balb.idr	Intergenic	L2|LINE|L2	-6520.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	2.16095284807855	2.17447693404028	2.40173401668933	2.43587147269952	2.17474188818122	2.5386699643256	0.936424122089501	0.288804662478581	1
Merged-chr8-83611923-2	chr8	83611433	83612433	+	845.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018808, exon 3 of 3)	3' UTR (NM_018808, exon 3 of 3)	3385.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	2.35324138084443	2.16827128139355	2.4778034347281	2.55400700826311	2.24559574372777	2.61454477743325	0.885727859725232	0.311660636949943	1
Merged-chr4-86875017-2	chr4	86874502	86875502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 1 of 5)	intron (NM_001290543, intron 1 of 5)	588.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	4.34058368984669	4.53951453214254	4.64747356546878	3.94260936171143	3.9912311165346	4.17891331521885	-1.30653491521069	0.00597597084903211	0.0695843843992769
Merged-chr6-117917725-4	chr6	117917222	117918222	+	910.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166431, intron 2 of 2)	intron (NM_001166431, intron 2 of 2)	428.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	7.86872918737765	8.30524176679897	8.03314453135011	7.72138288055285	7.95605523032561	7.83507524961982	-0.343011319006018	0.150739098593309	0.517737097158098
Merged-chr15-76671575-4	chr15	76671067	76672067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-76.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	5.10258683608308	4.81146962793333	5.23363331896562	5.06964258032445	4.96999598051661	5.00165215037829	-0.081590165426382	0.831403094131005	0.960444904168444
Merged-chr12-29713486-4	chr12	29712981	29713981	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-27036.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	4.73040663123065	4.95262911720054	4.68835442522329	5.67389497511216	5.50067756599985	5.63158010721445	1.62335197876934	1.23826316131585e-05	0.000481239612922789
Merged-chr1-153510583-4	chr1	153510078	153511078	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 10 of 11)	intron (NM_028749, intron 10 of 11)	-22918.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.76516298623776	3.90946439100586	3.9050620980077	4.24226362739204	4.21490067024198	4.30256944389078	1.14941169431226	0.0185588694539675	0.153877310223614
Merged-chr19-4284482-3	chr19	4283980	4284980	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	4.74991776350065	4.63567377373527	5.29181573810266	5.28393522226959	4.72274231371811	5.17606404804138	0.351759473697813	0.430206735138677	0.796150673085838
Merged-chr4-132793606-2	chr4	132793106	132794106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	B2_Mm1a|SINE|B2	2758.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.34393125807566	7.61466860048564	7.18633728430314	7.61150375044785	8.0433249160435	7.5698644281714	0.532963138708177	0.0466774915267881	0.273397853419545
Merged-chr5-39820222-3	chr5	39819737	39820737	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175606.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	4.05240381983468	3.8046700210465	3.64880666414018	3.95459671314454	3.77940537369638	3.88255141361331	0.0553982556767494	0.917858341858648	0.981747877135909
Merged-chr13-26236282-2	chr13	26235782	26236782	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A|LTR|ERVK	76124.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	3.2273544668851	3.33463396733405	3.21888713997283	3.06739723714161	3.00318017518667	3.05396771115079	-0.985494692032097	0.128421848738224	0.479309463972825
Merged-chr6-55016310-4	chr6	55015790	55016790	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-21711.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	3.46147363588072	3.61144932759518	3.77456407716574	3.39820536766673	3.45945691528869	3.88889587940072	-0.087342171909167	0.883781041960007	0.973446302281334
Merged-chr11-115642848-2	chr11	115642348	115643348	+	959.819458	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14553.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.30449744042825	4.9479404458741	5.15417457459594	5.43953923730463	5.40424371286427	5.89099046245964	0.868221931179909	0.0206711095924525	0.164909078328743
Merged-chr18-35942319-4	chr18	35941827	35942827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22503.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	4.93091890492788	4.84264618966386	5.03099802144643	4.63492338096804	4.60322333392347	4.70019892633352	-0.66910199183106	0.0898407618890011	0.398367649232111
Merged-chr13-17804397-5	chr13	17803926	17804926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	671.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	8.09064623941847	8.19510471221397	8.2760229318381	8.25218937812442	7.8034738648293	8.36687930028325	-0.0417112046129857	0.865615876421397	0.968641478520565
Merged-chr1-74391521-4	chr1	74391035	74392035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-74.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	7.6712681135387	7.39673984389488	7.3382091876041	7.66680271092623	7.38294004719761	7.41753994246434	0.0200608188475218	0.935056865789032	0.985758101267319
Merged-chr19-47465642-4	chr19	47465147	47466147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1236.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.8734739056451	5.74727646468731	5.34594200427962	5.42274148478406	5.42924417677288	5.31056876953364	-0.55650795715299	0.110253615221104	0.443573291524882
Merged-chr10-111298621-4	chr10	111298144	111299144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027914)	promoter-TSS (NM_027914)	-35.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	5.80693575928356	5.46376145420177	5.61702387789328	5.43024369799536	5.17957234476848	5.73026978080054	-0.351982870721119	0.328408473077462	0.720570952399058
Merged-chr3-86842843-2	chr3	86842375	86843375	+	743.875	f0_balb.idr|f1_balb.idr	intron (NM_001195500, intron 2 of 11)	RLTR41A2|LTR|ERV1	78009.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	4.08791708696055	4.04469966475128	4.06503321158905	3.68391212237615	3.85206686454832	3.89218848077016	-0.782744842522072	0.123488849451146	0.470285147381159
Merged-chr9-45268202-4	chr9	45267693	45268693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008348, intron 1 of 6)	intron (NM_008348, intron 1 of 6)	956.0	NR_136903	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	7.77100632751912	7.76023627865702	7.75786108183119	7.95347533188679	7.98472734209523	7.77973674598092	0.215784936344763	0.316180329346367	0.710317318544536
Merged-chr2-156182299-2	chr2	156181799	156182799	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-2061.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	3.84434971129809	3.74541824142934	3.82248190706972	3.31335647878503	3.48822489929217	3.41225259031491	-1.4110056648862	0.0153704136876812	0.134980620804705
Merged-chr10-95685336-4	chr10	95684852	95685852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121206.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	6.35752131601656	6.14367628716064	5.82586062150327	5.92873769977808	6.2041752420041	5.6622819477889	-0.293647152489946	0.386769694525328	0.767209905576392
Merged-chr14-40954545-2	chr14	40954045	40955045	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-6336.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.79402748458172	3.699217468497	3.77177036235228	3.696842153639	3.57188634417726	3.84093126295136	-0.184799032870917	0.731681885493206	0.931512383000071
Merged-chr10-117277375-2	chr10	117276875	117277875	+	660.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_017372)	TTS (NM_017372)	4897.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	5.03485333171887	5.07422209403143	4.82069720446121	4.69607610112853	4.74677038554705	5.0308982111616	-0.36755607152204	0.352006214228226	0.739656957373914
Merged-chr2-71340214-2	chr2	71339714	71340714	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	27340.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	2.90662107043885	3.09430265489046	2.8964568348652	3.07433994401275	3.17862212232441	3.15215601217888	0.733648003865071	0.276700232954793	0.674041208769616
Merged-chr19-47932446-4	chr19	47931952	47932952	+	826.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5260.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	2.23456732692756	2.19926143628124	2.37347900049947	2.15540802953126	2.06568677347043	2.25611581767893	-0.800280578308753	0.364929003386878	1
Merged-chr14-63121486-3	chr14	63120920	63121920	+	780.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.78540457538327	6.16175962941865	6.36062574289698	6.03397668402137	6.3666211637028	6.27003760285201	0.19911898499512	0.533119089779628	0.852197548492566
Merged-chr16-12089856-4	chr16	12089352	12090352	+	777.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	105739.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	3.47725825925569	3.41331716880452	3.34816865292133	3.40872598707689	3.29310818839001	3.36271206374626	-0.246529004416875	0.677930349204675	0.913273135651048
Merged-chr18-46312926-2	chr18	46312426	46313426	+	611.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	-998.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	3.19941653603237	3.08885255859223	3.13208953633089	3.16393917539677	2.94827949894089	3.14590973786135	-0.249103643796872	0.703334760958218	0.922108924938678
Merged-chr4-11076200-4	chr4	11075697	11076697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	8.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	4.14417010875712	4.02281295499374	3.75380985898861	4.11171990427435	4.11297209664818	3.82663215217506	0.113650365683795	0.828693985514003	0.9598352930318
Merged-chr16-44780850-3	chr16	44780349	44781349	+	847.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	15113.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	3.15801393364948	2.97475637857934	2.92495975311207	2.69686122171856	2.73267626460365	2.67817337509538	-1.67748667400304	0.0257312463814185	0.190179920847848
Merged-chr14-69249392-3	chr14	69248869	69249869	+	671.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026331, intron 2 of 3)	intron (NM_026331, intron 2 of 3)	35734.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	3.89376952665555	3.8815896618165	4.01685472988773	3.75024547357151	3.44743473904841	3.84834021316903	-0.804619560230166	0.143483950999475	0.505666554935205
Merged-chr11-103051479-4	chr11	103050977	103051977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 3 of 11)	intron (NM_008707, intron 3 of 11)	22934.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	6.3058015291315	6.24862925175091	6.00918934773573	6.03726371387796	5.74100702902335	5.65149921900594	-0.652552999494989	0.036315685085407	0.234517308854214
Merged-chr6-134828376-3	chr6	134827836	134828836	+	776.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	2.74470378778395	2.53912117924515	2.54523321997819	2.80787524690697	2.72334405243888	2.93281123914317	1.09574401183245	0.153267569533081	0.522110330345248
Merged-chr7-99539454-4	chr7	99538917	99539917	+	947.107178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	3931.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	4.66659016576324	4.65484333392009	4.66096872332304	4.68353293105018	4.40827584030644	4.76499573273841	-0.106065388193639	0.800523298441899	0.952563996979043
Merged-chr7-98103457-3	chr7	98102947	98103947	+	935.833374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	5801.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	3.3390251192864	3.32578625200081	3.28601197305425	4.48017352950942	4.15815443663485	3.8547201055547	3.0874267173441	1.45190431032954e-06	7.52710615912154e-05
Merged-chr10-41883087-4	chr10	41882613	41883613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-4326.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.63990550171672	5.63165324994707	5.77159603243737	5.56304632986037	5.75934006071859	5.80829738655842	0.0658445080393305	0.834636243250539	0.961356762574624
Merged-chr16-93603151-1	chr16	93602651	93603651	+	761.0	f1_c57bl6.idr	5' UTR (NM_145482, exon 2 of 12)	5' UTR (NM_145482, exon 2 of 12)	664.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	4.4548188633468	4.21085915782764	4.27177205169699	4.35356447221642	4.37022868409434	4.55135677928966	0.269898942044711	0.548333855001801	0.85965540331284
Merged-chr18-68143085-1	chr18	68142585	68143585	+	635.0	f0_balb.idr	intron (NM_172631, intron 3 of 5)	L1_Mur3|LINE|L1	-84861.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.88488253448386	2.95426213135152	2.82665723923819	2.60232981437798	2.61530244715439	2.57918261942127	-1.62743402087788	0.0347353454420406	1
Merged-chr5-53267129-4	chr5	53266637	53267637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145433)	promoter-TSS (NM_001145433)	31.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	6.45980813708633	6.71553160381194	6.37347396141321	6.67219543490966	6.46300453060346	6.31249072954003	-0.0586975900625413	0.836515899539984	0.962001762335242
Merged-chr2-79302602-3	chr2	79302098	79303098	+	640.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 16 of 27)	intron (NM_010576, intron 16 of 27)	47172.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	3.19926931825521	3.22671179379507	3.43809733792153	3.16980866875978	3.15728265864945	3.17877566182826	-0.493537662752445	0.433197822500189	0.79771443399716
Merged-chr11-118237330-4	chr11	118236820	118237820	+	823.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11272.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.35038500769922	7.37207479382082	7.42014732454663	7.43482832407639	7.64485565408044	7.39173047019676	0.180203877592908	0.434721170181899	0.798628466396473
Merged-chr11-68851233-2	chr11	68850733	68851733	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023668, intron 1 of 8)	intron (NM_023668, intron 1 of 8)	1898.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	4.21033212925421	4.41205047802512	4.61444413772454	4.45232307049465	4.19687831591063	4.44231721017707	-0.134300031500489	0.77079140713655	0.94345245755247
Merged-chr7-16010100-3	chr7	16009623	16010623	+	663.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10628.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.80465268793735	3.68275162466843	3.91824239516901	4.28572941797917	4.58409135367002	4.18803729607049	1.68684527477279	0.000859241207753389	0.016009501357172
Merged-chr2-167686101-2	chr2	167685601	167686601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-2814.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	3.21374140508993	3.27288497565711	3.63619914487759	3.30172730057147	2.98254088698172	3.34916677088094	-0.663554190281317	0.318550474835473	0.712468820902997
Merged-chr4-88419590-3	chr4	88419091	88420091	+	651.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 6 of 6)	intron (NM_025760, intron 6 of 6)	19335.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.65093900621539	4.39112436803054	4.52117374671748	4.43143515701624	4.37333281509733	4.91759772886521	0.144735465699477	0.75186356837301	0.938016588905039
Merged-chr9-25569881-3	chr9	25569373	25570373	+	813.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88276.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	5.59137900115888	5.73917974827806	5.40265474341444	5.66615225960532	5.31038743412327	5.33869409543731	-0.276937051137555	0.426369359717743	0.793775990271191
Merged-chr17-87315423-4	chr17	87314943	87315943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	32557.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.45484076093736	4.35669601093966	3.81032260029691	4.05559997397595	3.62150192902107	3.70845142140472	-1.28226179693867	0.0256191023302721	0.189689924516129
Merged-chr13-9882502-4	chr13	9881982	9882982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117161.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.741888534878	3.54558689293324	3.57951043063129	3.89191822127568	3.90013045463499	3.91365128589074	0.898450839143274	0.0930442510555747	0.406374548333771
Merged-chr4-132815226-4	chr4	132814727	132815727	+	869.8291630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-18863.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	5.49489291607792	5.4525667622676	5.36831164254294	5.48240669299746	5.749273518304	5.83941552431099	0.473861209343889	0.152484958785301	0.520581697545072
Merged-chr3-136701998-2	chr3	136701498	136702498	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	31932.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.85509977871679	3.90355490417575	3.94908907233598	4.06692341181507	3.94901945642539	4.11185602184219	0.420083995907198	0.395744345708641	0.773110499793972
Merged-chr12-102432209-2	chr12	102431709	102432709	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	MER2|DNA|TcMar-Tigger	7604.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.69576128108821	6.83802754319773	6.862972209831	6.88920208850022	6.89974101786134	6.73974927406678	0.0805318741826949	0.747641414721792	0.936653971666454
Merged-chr8-94549689-4	chr8	94549199	94550199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 2 of 15)	ID_B1|SINE|B4	16671.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	6.39091773869604	6.81685960268884	6.62274911935922	6.659181965302	7.16389985755873	6.89768914295524	0.476709520363297	0.102026385801561	0.425982814480218
Merged-chr4-34259581-2	chr4	34259081	34260081	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209514.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	2.95593976503971	2.59802332991642	2.92782849193784	2.68884864805364	2.70500618300267	2.88279565045971	-0.393392800224737	0.601455915323329	0.881943853341137
Merged-chr7-88230938-4	chr7	88230459	88231459	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCc|LINE|L1	-47126.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.42465733962349	7.48542922769002	6.47373817288835	7.38889224968468	7.61277569787819	7.13469046504815	0.268843190501082	0.432487504776514	0.797386699146392
Merged-chr8-85299719-5	chr8	85299211	85300211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022997)	promoter-TSS (NM_022997)	79.0	NR_028268	56452.0	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	7.27609525534799	7.73122996377267	7.38309923224402	7.37779793522285	7.28567179518819	7.46126255437408	-0.162714348276141	0.519257695302539	0.845725113262126
Merged-chr10-75517927-4	chr10	75517424	75518424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347201)	promoter-TSS (NM_001347201)	48.0	NM_001347201	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	7.73377235697387	7.76347592163685	7.84522721524377	7.81922953878264	8.11481843609282	7.6762464768427	0.161360235869365	0.494127540139134	0.831815174927983
Merged-chr5-3503957-4	chr5	3503465	3504465	+	952.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-39868.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.95588318478239	5.90681649041943	5.78982531348874	5.54320471700962	5.65107199583341	5.55212716078915	-0.554701243807306	0.0737524220235139	0.356924885798681
Merged-chr11-49241722-2	chr11	49241222	49242222	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2469.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	3.0531458570496	2.80361957030188	2.82524561374336	2.81401867970792	2.75277420887233	3.07375688759429	-0.0986133511813565	0.89194632216094	0.974942585822634
Merged-chr1-180641191-7	chr1	180640727	180641727	+	948.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_120498)	promoter-TSS (NR_120498)	77.0	NR_120498	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	6.3547557470216	6.32374029464767	6.30862563025803	6.44291235895734	6.16651842848606	6.20532512151264	-0.0882732162630989	0.751528180836088	0.937886504040509
Merged-chr11-59221542-6	chr11	59220856	59221856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	6806.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	5.34508368377347	5.20677710494524	5.55210305593335	5.44736205354458	5.57078897032583	5.35246360755462	0.199569995384344	0.562937267598494	0.865755360453189
Merged-chr12-85647017-2	chr12	85646517	85647517	+	824.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39703.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	4.78550057469811	4.39490841105851	4.68302904597847	4.37211103185028	4.41038590744706	4.67232813595299	-0.358306816861502	0.418705953088883	0.788745668982359
Merged-chr12-108936467-2	chr12	108935967	108936967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42195.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	6.06029292098888	6.16963600971296	6.38977360343859	5.94644224511554	5.5691171766997	5.59765793490525	-0.857748550626337	0.00740969736424827	0.0814675077014231
Merged-chr14-51064890-5	chr14	51064312	51065312	+	939.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6630.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	5.93915907197946	6.32954853672341	5.9222995184278	6.76832329244764	7.12026850112061	6.39691143588273	1.16338961473147	0.000396517425877887	0.00872611001651606
Merged-chr2-170134196-2	chr2	170133696	170134696	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 1 of 6)	intron (NM_001159683, intron 1 of 6)	-2976.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.2850355064855	6.14593024153092	6.45128370467492	6.53250728203651	6.5240411406487	6.57926325864056	0.41273665902474	0.128810484033406	0.479875190042216
Merged-chr12-85456588-2	chr12	85456088	85457088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17302.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.80971748224813	4.78021572354551	4.46594557410165	4.29737782246697	4.45061557462244	4.77516733210945	-0.454973373246785	0.308392560551752	0.704469935667044
Merged-chr3-152355452-3	chr3	152354949	152355949	+	730.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355666, intron 1 of 21)	intron (NM_001355666, intron 1 of 21)	8971.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	4.44284717761062	4.66447584508228	4.98351790072215	4.52055518867683	4.12535509828737	4.85095352241362	-0.444924865189481	0.364816001727931	0.750028369485675
Merged-chr19-10881754-4	chr19	10881236	10882236	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	7.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	5.83522050451267	6.16650545767604	6.1978951578668	6.20107624673445	6.13703669380763	6.27767527405889	0.221234750847672	0.455780973664916	0.811135135423171
Merged-chr1-16688335-4	chr1	16687827	16688827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-129.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	7.94569064957833	8.30115482656678	8.00510562395531	8.09586865842392	8.45947612277317	8.03871729960797	0.171264852525865	0.486196280571926	0.827728041593793
Merged-chr18-46576442-4	chr18	46575940	46576940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1907.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	6.2301566733043	6.37499619962493	6.35400530510382	6.03516528313442	6.29533079395129	6.35734544284258	-0.14156136654707	0.618357050701541	0.889300404009434
Merged-chr19-55797958-2	chr19	55797458	55798458	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	56148.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.87389916873726	3.71163858356909	3.70908236482311	3.68607719232129	3.62726872023923	3.67312711906235	-0.365931387825677	0.496044176728857	0.832884389427821
Merged-chr4-44757631-2	chr4	44757131	44758131	+	671.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 1 of 8)	intron (NM_138590, intron 1 of 8)	1072.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	5.23489590216075	5.40294521521345	5.17676528327866	5.53110565303041	5.4644199365884	5.17177082852658	0.248125285564346	0.483593761270382	0.826344998208973
Merged-chr3-15959086-3	chr3	15958592	15959592	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	47240.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	4.56793979653718	4.66613695200271	4.76469595547743	3.78812075512898	3.62783235164844	3.69905133143272	-2.92563478699496	5.62372154104572e-08	4.28907994488847e-06
Merged-chr1-55405785-4	chr1	55405269	55406269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114663)	promoter-TSS (NM_001114663)	-177.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.67478747586575	5.82042085357821	5.73352471518384	5.77336867300071	5.69158250478	5.31825015016461	-0.22719799343886	0.494749763711765	0.832098209532918
Merged-chr7-99132836-3	chr7	99132367	99133367	+	781.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	8277.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.48931427412838	6.53515263379189	6.93308157357295	6.698437070191	6.93355413911374	6.93770551469007	0.319888840674981	0.248699977959082	0.645819769301048
Merged-chr17-73946777-2	chr17	73946277	73947277	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	3419.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.7319403907299	5.42477627729855	5.58718297530626	6.12337346307436	5.71992720708403	5.59255448345998	0.454230025621003	0.187135174496925	0.572089925767512
Merged-chr6-35536273-4	chr6	35535776	35536776	+	765.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	3612.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.97505080460312	4.00188955675966	3.86980444358393	3.97579157736532	3.82993437940749	3.93954490047462	-0.127642747190698	0.799477119728439	0.952248176414355
Merged-chr10-80701615-1	chr10	80701115	80702115	+	644.0	f0_c57.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	205.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	6.06932789559366	5.93245327669227	5.84292197453734	5.99551040630207	5.93050533074275	6.23715020288265	0.162801749872349	0.589954417267756	0.877060163469295
Merged-chr5-135064142-4	chr5	135063629	135064629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025362)	promoter-TSS (NM_025362)	-77.0	NM_025362	66114.0	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	6.12271475284629	6.04556222291558	6.20719051991433	6.26511980646543	5.88800299548129	6.14332057513212	-0.0355180946028198	0.905239857031818	0.978279198518346
Merged-chr8-79398090-4	chr8	79397595	79398595	+	832.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	1373.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.93126386581228	6.04167149786457	6.20384720883824	6.17700293793533	5.92247246760237	5.83557313644325	-0.115903387393243	0.703886875800282	0.922281360858231
Merged-chr2-116953548-4	chr2	116953059	116954059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53407.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.00676485530982	3.94969884399275	3.9062481538703	3.86116142073261	4.04478260890588	3.70891345141672	-0.203840611653869	0.695965984181285	0.919291538728398
Merged-chr11-115001062-2	chr11	115000579	115001579	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 1 of 3)	intron (NM_134158, intron 1 of 3)	801.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	7.57097999662503	7.51570335087526	7.3722239177463	7.82339822873359	8.11949771988962	7.66565871752423	0.575765765494268	0.0179494008100891	0.150497152620506
Merged-chr7-19475162-2	chr7	19474659	19475659	+	807.5	f0_c57.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16665.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.21800966029751	4.25213944652199	4.41082264312561	5.279984228653	5.95217444998938	4.92892451573482	2.65424463093316	1.53547163444731e-08	1.3322578077069e-06
Merged-chr10-13986713-4	chr10	13986174	13987174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	20295.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.83658806224205	6.73514849352908	6.63612824603073	6.63018942192748	6.79361236902384	6.61022653411237	-0.0885850496495282	0.731195735665517	0.931335202492941
Merged-chr16-21696259-2	chr16	21695759	21696759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1594.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.61645688533734	3.42137571222172	3.77628031643603	3.48491789864366	3.35011953956593	3.5968845824476	-0.475987870646766	0.417318471231352	0.787951515900482
Merged-chr11-106890237-2	chr11	106889737	106890737	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 1 of 18)	intron (NM_025481, intron 1 of 18)	30478.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	3.23543952625286	3.09863186703741	3.11367988111671	3.18530860367595	2.90520919493939	3.00440053420425	-0.521366764887532	0.436441314220618	0.799486950869076
Merged-chr10-82814787-4	chr10	82814257	82815257	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2634.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	6.71790318659832	6.92547706823532	6.25938720620391	6.73687280395741	6.86753312776357	5.91837179754254	-0.138095887693324	0.708834276107725	0.923778223606281
Merged-chr8-57487953-4	chr8	57487455	57488455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	-8.0	NR_126553	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	7.47702713443977	7.52785113694411	7.2670139784876	7.30122870336989	7.3435990748194	7.31279641764603	-0.170419362613808	0.462016153189625	0.815107818354545
Merged-chr15-98661473-4	chr15	98660967	98661967	+	945.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	intron (NM_001080981, intron 1 of 16)	1422.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	6.04842234562603	5.89413499663641	5.56191193691175	5.6204947499045	6.03803725808799	5.76702135385109	-0.0566777391168929	0.867304382073335	0.96931826298411
Merged-chr3-123335069-4	chr3	123334561	123335561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	50929.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	5.87922939929408	5.49121903565072	5.08473877750506	5.63188758578364	5.65919970426862	5.69702060112126	0.224625968283391	0.55064603370621	0.860709619458349
Merged-chr2-91495453-4	chr2	91494958	91495958	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 28 of 37)	intron (NM_172668, intron 28 of 37)	-31304.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.695564403902	4.63993454814986	4.87546202961386	5.04503639423213	5.15575476809904	4.78767760081285	0.631982362826219	0.110952901094555	0.44490461291026
Merged-chr11-35694897-4	chr11	35694395	35695395	+	907.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 32 of 35)	ORR1G|LTR|ERVL-MaLR	-74600.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	3.68115182495143	3.52447619464212	3.83307238828408	4.31883768064365	4.57870684239279	4.2955739966874	2.24598377234372	1.8436981652552e-05	0.000680916275785861
Merged-chr6-83006181-3	chr6	83005693	83006693	+	884.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 6 of 9)	intron (NM_033079, intron 6 of 9)	27278.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.4453595859218	5.60621486836486	5.67528998931818	4.88936197117604	4.9634281266366	5.02063354869373	-1.25297548702223	0.000407261227510697	0.00891304371875593
Merged-chr2-92434608-3	chr2	92434108	92435108	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-539.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	7.15003055062182	7.64601232219534	7.19713633667084	6.82986855181852	7.49708773513908	7.11663912096965	-0.25320194404761	0.401542434909157	0.77760939613939
Merged-chr9-65561148-4	chr9	65560631	65561631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18956.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.62030097786914	6.70016652687654	6.80867952481733	6.69321818345765	6.57000332911232	6.24773958157063	-0.287503323666635	0.299188086511511	0.695964214930834
Merged-chr7-126793631-2	chr7	126793131	126794131	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	4.64337942343679	4.671542775675	5.1993629472793	5.18331391125819	4.97477910873846	5.13830243626542	0.542011735651202	0.187882172948313	0.573220587256787
Merged-chr19-3384583-3	chr19	3384091	3385091	+	939.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013495, exon 19 of 19)	3' UTR (NM_013495, exon 19 of 19)	-4266.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	3.72113882203281	3.84041730652631	4.50783906517477	3.76797927021038	3.72754207707591	4.14857297903217	-0.51085161802043	0.38697139694056	0.767376453685179
Merged-chr19-29498104-4	chr19	29497596	29498596	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	23891.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.55435749030149	5.97780936569457	5.71185946946359	5.75282478398769	5.95362056369583	5.41904458588972	-0.0412129900717435	0.906539335979911	0.97877815205411
Merged-chr12-54844596-4	chr12	54844117	54845117	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18260.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	3.88335386966887	3.92006099407438	4.25903473064	4.27520248225878	4.28743189379775	4.28289782404077	0.743374739476188	0.124932051008355	0.472902652183749
Merged-chr7-126668712-2	chr7	126668212	126669212	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 4 of 9)	ORR1E|LTR|ERVL-MaLR	7706.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	3.35553149229893	2.97137349991604	3.1888080309469	3.03573202990716	2.91690289713892	3.20394169869268	-0.571988523244371	0.402586090863613	0.778109299402558
Merged-chr17-42892157-3	chr17	42891658	42892658	+	805.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-15734.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	2.27922909677586	2.26259430512794	2.39433541944304	2.98891252726933	3.01712902863023	2.87625222971433	6.42090574255773	1.36959325578054e-06	7.14937990131665e-05
Merged-chr12-84193983-4	chr12	84193481	84194481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	34.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.14424319950506	8.08008775480717	7.92768441718434	7.91222168990657	7.81036744961607	8.05783823240226	-0.187347623803524	0.393809751629858	0.771940960060713
Merged-chr14-14068045-5	chr14	14067610	14068610	+	855.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52794.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	5.06931325364944	5.25082665872611	5.0930859917628	5.0560692003709	5.23232589903326	5.37885738836414	0.164033068731049	0.651133204500341	0.902735752871093
Merged-chr3-8979695-2	chr3	8979231	8980231	+	881.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	RMER1C|Other|Other	-15585.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.80278263626388	3.57331924748874	3.73104058038776	3.31551667143402	3.35301238123154	3.48668205917123	-1.18778354249759	0.0420737330937427	0.256855110830734
Merged-chr17-70755131-4	chr17	70754623	70755623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	91654.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.95592867549651	4.6114605492225	5.18673512082073	4.41811285238425	4.5613865575356	4.75529520038695	-0.808452015902328	0.0648290597012255	0.331889684883762
Merged-chr4-132947792-4	chr4	132947293	132948293	+	853.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25242.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	6.38701222078781	6.44100375511034	6.63738563303853	6.38395042599534	6.40789588055496	6.56633701908214	-0.0575664631324692	0.831479408233175	0.960464332375456
Merged-chr7-4060939-2	chr7	4060439	4061439	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178611, intron 1 of 6)	MMETn-int|LTR|ERVK	2265.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	5.14892728448933	5.09126550872929	5.44451668309434	5.39223339326886	5.78628712801427	5.64372359375305	0.770847765990891	0.0299629197843987	0.208754469515218
Merged-chr6-117881437-4	chr6	117880921	117881921	+	850.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	18540.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	6.88659391917908	6.81563374344902	6.9398340540172	7.05971402124659	7.47014780803129	6.98407860963861	0.489437924616992	0.0662798254505345	0.336137728779672
Merged-chr13-111418216-4	chr13	111417698	111418698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	71929.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	3.54968430860524	3.87179375149695	3.62146393640763	3.52651289531681	3.48460583885575	3.52829972220764	-0.638533202956897	0.263058416208612	0.661066252782647
Merged-chr13-6632667-3	chr13	6632167	6633167	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	16104.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	2.92602841783516	2.81768010475929	2.61238749249169	2.87056020666728	2.59371110181056	2.94086578291998	0.059488058560907	0.938594630025029	0.986515091506254
Merged-chr11-80129902-2	chr11	80129402	80130402	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029856, intron 19 of 22)	intron (NM_001029856, intron 19 of 22)	12251.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	3.87154074566513	3.51121027083568	3.70576542116114	3.71919319770938	3.72318114046473	3.72366000459439	0.0557035394841186	0.919527575312188	0.982034101943453
Merged-chr11-73030999-4	chr11	73030516	73031516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 9 of 15)	intron (NM_018883, intron 9 of 15)	12008.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	3.55780051948017	3.39165817207284	3.71209014519487	3.42527531036702	3.3665599518627	3.29927542215186	-0.703432808402143	0.239806779881442	0.636770540094307
Merged-chr3-88173569-2	chr3	88173069	88174069	+	646.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	intron (NR_045997, intron 2 of 2)	4216.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	3.4024349197803	3.38990025011801	3.37701906339833	3.46065544246105	2.85504353396862	3.60646799960229	-0.144553930597959	0.84216186123147	0.963002495523594
Merged-chr16-55757336-4	chr16	55756832	55757832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64806.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.49169592179328	7.72597357441452	7.16272738063028	7.38338624934058	7.63629206331473	7.34240324875783	-0.0348419228172348	0.895315213833901	0.975665889379756
Merged-chr16-37653684-2	chr16	37653184	37654184	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	684.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	6.42570450275215	6.7850067611814	6.57589266888011	6.80396955330908	6.99232877019962	6.50944546331375	0.298504514485503	0.298274455040607	0.69500092474273
Merged-chr1-77832384-4	chr1	77831888	77832888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-317300.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	5.22985957773659	5.24528536064229	5.18812394930568	5.68486222329039	5.41085424473805	5.35168668602504	0.529889643848811	0.125893605232769	0.474642279302592
Merged-chr11-67526744-4	chr11	67526241	67527241	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6257.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.30993800938471	3.16046010451941	3.39296526632856	3.81924155431322	3.65461212708399	3.78484744003378	1.75450234084822	0.00328152670246629	0.0450515352993535
Merged-chr4-53108447-4	chr4	53107947	53108947	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51448.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.5804166419505	5.29004681769545	5.24858027006929	5.35345771943915	5.53696971104843	5.02425391718562	-0.0980026640525492	0.793919725997727	0.950531747588938
Merged-chr6-16883708-4	chr6	16883212	16884212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	14729.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	6.51176148104353	6.50719622408482	6.77847163353889	6.76516014466511	7.07859306576306	6.86624928645624	0.499886483449013	0.061065597198369	0.320273949680548
Merged-chr13-55330483-2	chr13	55329990	55330990	+	745.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-760.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	4.21500451981502	4.07019114339577	4.44685473912642	4.17560771935794	4.10300659681041	3.80872666471829	-0.56160450740648	0.270353684851462	0.667299602638099
Merged-chr4-117139409-4	chr4	117138906	117139906	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5443.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	4.01384352805584	4.00255216291084	4.29751078091346	3.90076545935146	3.84651823975041	4.1060356874834	-0.461455135810641	0.360296275179038	0.746538582112494
Merged-chr11-69410854-4	chr11	69410328	69411328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	2847.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	9.29851849816135	9.10471207372065	8.78795612171937	8.93028627201391	9.17542484812893	8.72364142985764	-0.168912464338795	0.48699401456559	0.828209331534196
Merged-chr8-46551916-4	chr8	46551424	46552424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027973)	promoter-TSS (NM_027973)	-145.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	7.18323246314267	7.43851020477885	7.08318329958994	7.23463489506426	7.40194074487397	7.06042219986686	-0.00360187529184162	0.988771907845318	0.997426973334006
Merged-chr4-70534333-2	chr4	70533833	70534833	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172694, exon 1 of 6)	exon (NM_172694, exon 1 of 6)	595.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	3.60579041787434	2.99894983258288	3.10988846076871	3.25950871453974	3.08757399837039	3.36015743051904	-0.135616207095296	0.845903073380935	0.963945177091542
Merged-chr12-71006282-4	chr12	71005767	71006767	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	9556.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	5.42585148778951	5.63966857270572	5.68903493085193	5.55840418667266	5.21329138079937	5.64788021336381	-0.211939625789815	0.543301391360909	0.857551302506722
Merged-chr10-81175188-4	chr10	81174704	81175704	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1427.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	4.851206252387	5.0007797022883	4.84817442067728	4.79628816961943	5.04241663356319	4.75695641190228	-0.050084949319527	0.898642244176579	0.976400095628185
Merged-chr11-86734383-4	chr11	86733897	86734897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 2 of 31)	intron (NM_001003908, intron 2 of 31)	23170.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	7.06116690548168	6.67254001483975	6.71861995268191	6.80079524857764	7.18336528879483	6.82476681727025	0.190058772177148	0.499332603764617	0.834407103145886
Merged-chr15-79742152-4	chr15	79741654	79742654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045069)	promoter-TSS (NR_045069)	382.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	9.41867765549808	9.23015597254954	8.7264244852802	8.98888123503578	9.03398052138105	8.60099984444634	-0.367830785980345	0.161739778175282	0.534877129780568
Merged-chr13-65242019-4	chr13	65241519	65242519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36303.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	6.42422422668693	6.70039026940384	6.61124580234817	7.4917817018876	7.50735521517056	6.7232300858382	1.09362035261106	0.000383955620890962	0.00852406064650352
Merged-chr4-114987291-4	chr4	114986793	114987793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025647)	promoter-TSS (NM_025647)	-65.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	8.02505407977349	8.26244403196452	8.29371210503948	8.09587315971222	8.2819898225017	8.14596705180588	-0.0246595123798072	0.910044812598502	0.979763851187084
Merged-chr2-112394184-4	chr2	112393707	112394707	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024254, intron 1 of 9)	L2|LINE|L2	14996.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	4.16395104867657	3.74779410210246	3.90286597220128	3.47796479122956	3.72803426312206	4.01886258175895	-0.618862768982667	0.281626674616701	0.679734270520554
Merged-chr3-94611611-2	chr3	94611111	94612111	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28895.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	4.6529821756657	4.89297023435793	4.54660275218108	4.35463109603213	4.4419825200203	4.24646698445241	-0.878324272273918	0.0469602139708379	0.274334266827086
Merged-chr9-111039927-3	chr9	111039469	111040469	+	911.9833369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	17275.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.40288714883606	3.70292360355527	3.57186767065019	3.35720899138577	3.68988993824087	3.88906030119514	0.321575228156938	0.592875804512695	0.878314455943299
Merged-chr11-46779994-3	chr11	46779501	46780501	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134248)	TTS (NM_134248)	28833.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	3.25367982788502	3.26447127476077	3.65406692291176	3.36872428891766	3.41848473067782	3.67429732280128	0.349090808717089	0.572576987045941	0.869889644472579
Merged-chr4-53217145-2	chr4	53216645	53217645	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29051.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.763066899449	4.30572214701074	4.60641795274514	4.2977010753103	4.10362917652522	4.51381879488891	-0.681929570370088	0.148516689599499	0.514111804913504
Merged-chr17-84318685-3	chr17	84318166	84319166	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	-130719.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.28896753038654	4.33169138425661	4.31901335268069	4.53850341219524	4.52710514557463	4.63798132481754	0.641249824572373	0.135816497147309	0.492611326858478
Merged-chr18-34506200-7	chr18	34505656	34506656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	667.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	7.7462647788394	8.0709775697435	8.22480924976084	7.97921584130207	8.261256183562	8.15306245681791	0.159257097159428	0.509421245462068	0.840296625810954
Merged-chr5-99414502-4	chr5	99413988	99414988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161561.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.54242847561216	7.63381394003161	7.51435319234128	7.26006092043944	7.54688712301282	7.02761338371045	-0.377648452529864	0.138190064483647	0.496910928502821
Merged-chr9-115309671-3	chr9	115309170	115310170	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024222, intron 1 of 15)	CpG	751.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	7.60685635342801	7.86759924974339	7.45956347210242	7.57247349847456	7.55997017958476	7.43095446444303	-0.199893726205496	0.40434537502761	0.779499790679241
Merged-chr7-125541109-4	chr7	125540589	125541589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-11193.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.10531577055355	6.12964861244935	5.86489259450222	6.50204294510784	6.31041242251677	6.05195417272919	0.438668881011496	0.147284952605896	0.51213793055522
Merged-chr7-5013480-2	chr7	5012980	5013980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110330)	promoter-TSS (NM_001110330)	17.0	NM_001360243	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	4.44697548425961	4.67960640822453	4.91288778033867	5.11539891685557	4.86982536018495	4.83187417874319	0.596688314981374	0.150824025882932	0.517921899453881
Merged-chr13-95033203-4	chr13	95032720	95033720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	56876.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	7.12198095082679	7.18412224174333	6.71951165381864	6.66258486103398	7.07769923459655	6.01907159008215	-0.546348198673813	0.12774442593841	0.477895791452352
Merged-chr4-9631230-3	chr4	9630731	9631731	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	12486.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	8.67020185534222	8.55851035914626	8.08469857135014	8.61899456923352	9.03548782621443	8.57340875993809	0.409124555354519	0.119204927677316	0.461599470547924
Merged-chr10-21425944-3	chr10	21425446	21426446	+	855.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48646.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	2.85626428598973	3.05649848880898	3.04550325559367	3.77774152553836	3.87535359329733	3.38075712329079	3.12602481742557	2.3800098640061e-05	0.000847756253271488
Merged-chr7-128321361-4	chr7	128320859	128321859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23228.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	5.40568513864955	4.64817928422133	4.89181553477523	5.37783136989895	5.18102466962821	5.45420154345012	0.625193266754446	0.140367883487229	0.500699117062725
Merged-chr5-74531768-4	chr5	74531276	74532276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178672)	promoter-TSS (NM_178672)	-34.0	NM_001114660	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	6.24926300665078	6.36520248959518	6.20931370008035	6.36510114499304	6.3113842576031	6.31031462652361	0.0802202029876197	0.768144132687905	0.942831449939876
Merged-chr13-20212866-4	chr13	20212375	20213375	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	MIRb|SINE|MIR	122368.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.04932226091539	4.60592354507732	4.48295468456635	4.92515756193176	4.66382582380828	4.88123116066015	0.174351453573715	0.690462240473259	0.917851265381648
Merged-chr3-84769445-2	chr3	84769035	84770035	+	724.75	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46042.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.55660190287698	4.86269692049143	4.87503185833699	4.07504273634071	3.57512579990421	3.91757461169325	-2.57987815048781	1.36796272762399e-06	7.14937990131665e-05
Merged-chr7-139247672-4	chr7	139247180	139248180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-802.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	7.96629086917727	8.48241022862316	8.26428830560588	8.08975654614534	8.37848251318463	8.41383273558232	0.0630183083853132	0.798089694908868	0.951930937621884
Merged-chr5-103754085-4	chr5	103753593	103754593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080798)	promoter-TSS (NM_001080798)	-69.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	8.69970222436103	8.82478432295542	8.66898071991021	8.67247394023189	8.84749623926735	8.48408831244515	-0.072093965258676	0.73642140256925	0.93314645298821
Merged-chr17-87561128-4	chr17	87560630	87561630	+	801.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74849.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.33047749928928	4.24702704757003	4.14260230931655	4.63718218317609	4.6663669500733	4.35929068834415	0.825318971841385	0.0667564249027967	0.337710882983457
Merged-chr19-15537702-4	chr19	15537208	15538208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D|LTR|ERVL	386914.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	4.6616698049716	4.66179174849647	4.85957866278744	5.07171920973413	4.89744715078741	4.88809532072359	0.524715819238463	0.178962444305929	0.560321608436476
Merged-chr4-55580934-1	chr4	55580434	55581434	+	558.0	f1_balb.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-48459.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.81886531931684	2.94798755581883	3.24284638852817	2.87661196353215	2.49363374061093	2.73640922789379	-1.54691075325953	0.054000252371385	0.29809944930128
Merged-chr1-58423098-4	chr1	58422586	58423586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042634, intron 1 of 12)	intron (NM_001042634, intron 1 of 12)	1002.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	7.95553112720581	8.64501663443758	7.8459648991634	7.95982991645509	8.47772064020175	8.10472816326497	-0.00660690740575974	0.982510529931984	0.996025201140234
Merged-chr7-143094955-2	chr7	143094455	143095455	+	743.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020277)	promoter-TSS (NM_020277)	-313.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	3.12443475449488	3.11000284710025	3.34143038060862	3.42548190740634	3.30206393617545	3.51846726101326	0.907874293944724	0.144492363283271	0.507214386763159
Merged-chr5-110230301-1	chr5	110229801	110230801	+	563.0	f1_balb.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-703.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	5.35705403379159	5.4281311116293	5.65050380440445	5.24179465064941	5.2426401691314	5.53030703907486	-0.27721936158423	0.426362735122287	0.793775990271191
Merged-chr13-104611456-4	chr13	104610965	104611965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205488.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	5.69529313653126	5.44712224191954	5.49538840599421	5.6853668968005	6.00843355702821	5.80544442686325	0.536690282225036	0.0999678940148955	0.421747630948204
Merged-chr10-80170171-2	chr10	80169671	80170671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152857, intron 3 of 7)	intron (NR_152857, intron 3 of 7)	2332.0	NR_152857	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	3.37365700301639	2.96079544409266	3.15255199806237	3.1004795782124	3.01750712728656	3.22466287930075	-0.268901183092038	0.68961055047113	0.917435635731004
Merged-chr7-132812021-3	chr7	132811526	132812526	+	874.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	1170.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	6.6977249130026	6.85753871400819	6.61247127084173	6.73882502953698	6.98803933328748	6.49167569355066	0.0586468083514999	0.833835613385476	0.961104751385188
Merged-chr11-98829590-4	chr11	98829098	98830098	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 11 of 13)	intron (NM_138660, intron 11 of 13)	-7187.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	5.06682717041672	5.12031893309232	4.91219510067659	5.25032286446905	4.99763434645755	4.59732688628871	-0.117208252190286	0.776341794499094	0.94480820353868
Merged-chr1-84465064-4	chr1	84464561	84465561	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-180416.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.66129031596704	3.88177359256773	3.71391774961568	3.7962178111475	3.58890827607051	3.67793886951964	-0.236389347077951	0.664171558596181	0.907535709790147
Merged-chr8-119558003-2	chr8	119557503	119558503	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019709, intron 1 of 23)	intron (NM_019709, intron 1 of 23)	758.0	NM_001167910	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	5.59341177529618	5.7267438182357	5.68612792726604	5.93334163829369	5.85652263893787	5.57967204696108	0.250724469290207	0.430460997816461	0.79626959019857
Merged-chr2-121416729-2	chr2	121416219	121417219	+	867.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007952, intron 1 of 12)	intron (NM_007952, intron 1 of 12)	2817.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	3.6449826217345	3.97113092734228	3.85598967833072	3.89629457202116	3.99861936879052	4.1155074457419	0.524341902685521	0.314974555023756	0.709312911700361
Merged-chr3-144352798-2	chr3	144352298	144353298	+	688.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147543.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	2.22554230918688	2.45776113775469	2.48760198288201	2.62300557981318	2.51981070386347	2.62526433088781	1.19614487040797	0.152826481509909	1
Merged-chr5-136986342-2	chr5	136985886	136986886	+	819.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	518.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	4.57447627087857	4.0514644984947	4.68139612277895	4.96496778873186	4.67576339211275	4.7088859233234	0.793424568663055	0.0910503039143074	0.401574986117974
Merged-chr9-22366757-3	chr9	22366260	22367260	+	853.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	22446.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	3.01146239692756	2.74382981603896	3.15715315863188	2.70278984115831	3.01285349751933	3.00387141796672	-0.295698882218372	0.690414027696214	0.917823389001164
Merged-chr10-94105746-3	chr10	94105369	94106369	+	926.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 7 of 20)	intron (NM_053072, intron 7 of 20)	-42062.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.06864594930559	3.19084449186771	3.12141283589991	3.42077575908709	3.25710906431948	3.9994655786188	1.78211842020907	0.0091603087946556	0.0947316647011811
Merged-chr8-13601283-4	chr8	13600792	13601792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	L1MC|LINE|L1	-38831.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	6.52072472650569	6.48138815603414	6.43113146476284	6.30848987455162	6.29506600505732	6.19203367097422	-0.344808802176124	0.197957889024875	0.5860764999104
Merged-chr4-132076518-2	chr4	132076018	132077018	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	5.14325632110291	4.89006765504739	4.77537382076086	5.06715922010307	5.0835524387092	5.20238287414384	0.340994792394322	0.371418643404513	0.755590455851299
Merged-chr12-108629748-4	chr12	108629254	108630254	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	RLTR14|LTR|ERV1	-5999.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.45367997816776	4.41827055821066	4.33786068914562	4.24694880761297	4.4890827223589	4.4491929005219	-0.0150689017401831	0.972805462942191	0.993881982649774
Merged-chr13-60734537-2	chr13	60734037	60735037	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 17 of 26)	intron (NM_134062, intron 17 of 26)	51827.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.72796562344762	2.78220277840608	2.83309731921207	2.76077917094395	2.80566329779317	3.02189398498391	0.418664852580443	0.558063199903302	0.864475895700529
Merged-chr14-31398262-2	chr14	31397762	31398762	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	(TG)n|Simple_repeat|Simple_repeat	19415.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.72836391819607	5.54321200839236	5.86871788242648	5.39999987962262	5.03525895435828	5.53055862675434	-0.743702870787684	0.0376048620099263	0.239753686163661
Merged-chr10-121739840-4	chr10	121739335	121740335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359720)	promoter-TSS (NM_001359720)	-95.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	7.79118371226207	7.81738852874501	7.62230177690463	7.78305351066889	7.72802642965295	7.39936667496964	-0.137473182739998	0.562100496708029	0.86560636450104
Merged-chr6-25809953-2	chr6	25809453	25810453	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-727.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	5.55998067494412	5.89486739263363	5.58107280989637	5.5648956660423	6.14894385763611	5.70059055650597	0.268892668316461	0.449348333559896	0.807755274344362
Merged-chr12-112634026-3	chr12	112633593	112634593	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-10735.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	5.40222786375882	5.47447059808457	5.50606305777904	4.72581823774441	4.79605049581035	4.85758166418654	-1.40495526831609	0.000116450073505624	0.00322341241392414
Merged-chr11-75459326-4	chr11	75458844	75459844	+	953.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-2195.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	8.56176115215457	8.70107281982235	8.60760823160586	8.54494889809598	8.96885530446487	8.53818891581716	0.112403374330312	0.622784978708959	0.891249034616027
Merged-chr11-19979518-4	chr11	19979024	19980024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	55082.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	3.23931515122395	3.50546073860836	3.3170899804029	3.27373037091092	2.72198419561416	3.15717092761584	-1.21404171918215	0.108202023047483	0.439398218728357
Merged-chr11-109360609-2	chr11	109360109	109361109	+	734.205322	f1_balb.idr|f1_c57bl6.idr	intron (NR_038097, intron 1 of 1)	L1MB5|LINE|L1	-2185.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	2.70607217484781	2.44398452312604	2.68108179287706	3.14275516862201	2.86009821400049	2.94713263852326	2.02268277580329	0.0116659117120264	0.112063863049445
Merged-chr7-119896924-2	chr7	119896424	119897424	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029610, intron 1 of 3)	intron (NM_029610, intron 1 of 3)	632.0	NM_029610	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	5.83964590358062	5.94285054919917	5.89481563395304	6.10763727253461	6.28870028720755	5.95647091223522	0.419269180296055	0.159310803811821	0.531411723644967
Merged-chr5-25530825-2	chr5	25530325	25531325	+	600.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027388, exon 1 of 1)	non-coding (NR_027388, exon 1 of 1)	807.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	6.55109129584107	7.14875518482715	6.70150694970564	6.59123740865697	7.15569544159807	6.83777112429389	0.0881921841811379	0.778733622598557	0.945520893795831
Merged-chr5-114766692-4	chr5	114766224	114767224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 3 of 18)	intron (NM_001077359, intron 3 of 18)	6767.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	5.18007605384058	5.51759200852725	5.659188241443	5.17625537231345	4.83869111724405	5.31335244015294	-0.701077013466915	0.06970081230453	0.345567209627193
Merged-chr9-20973887-4	chr9	20973388	20974388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	2905.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	5.19438536571252	4.77733086202093	4.87680116961796	4.67795990763416	4.7443622258229	4.94202207918377	-0.400781772331485	0.32456818059032	0.717544999689449
Merged-chr2-127070612-4	chr2	127070098	127071098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026678)	promoter-TSS (NM_026678)	-59.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	7.27753884129306	7.36047419296239	6.82903653929113	6.6439959840157	6.78526899524672	6.64146041827168	-0.751669287464676	0.0059022318625911	0.0689474812329749
Merged-chr4-155215842-2	chr4	155215341	155216341	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	6694.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	2.96034230637443	2.85058187532127	3.02560581981973	3.19443253920663	2.64901538129209	2.78789913897911	-0.214780264112565	0.777019091601453	0.944960604705842
Merged-chr1-71101712-2	chr1	71101212	71102212	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	URR1B|DNA|hAT-Charlie	1260.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	4.51877558006815	4.62949703912018	4.25850087084193	4.66505963135996	4.9640140927657	4.88154358155003	0.83642355152137	0.0539833165060702	0.298065282006442
Merged-chr10-99267319-2	chr10	99266819	99267819	+	729.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026268, exon 3 of 3)	3' UTR (NM_026268, exon 3 of 3)	4088.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.08069182528175	6.10680037123303	5.78324078958879	5.83386958751447	6.06497086048785	6.04111370838294	-0.0412217461719448	0.892734411858172	0.975146620821922
Merged-chr7-141460830-4	chr7	141460357	141461357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-237.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	6.69294928252074	6.48448405929236	6.52148316938758	6.44239423699361	6.77016863710469	6.63197276767053	0.0880286111778666	0.746050328005453	0.936260355453809
Merged-chr11-115692181-4	chr11	115691661	115692661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	7373.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	8.78739616792376	8.94117050928585	8.25732242264754	8.68899962554397	9.09496984303928	8.22985309875545	0.0385205846441243	0.898647631518576	0.976400095628185
Merged-chr11-115181285-2	chr11	115180793	115181793	+	691.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_012030)	TTS (NM_012030)	6023.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	2.0137036253144	1.98435686692596	2.22381806034579	2.10687802050623	1.81220959892673	2.10311633318211	-0.482078326195396	0.623644446618761	1
Merged-chr8-41024420-4	chr8	41023942	41024942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015457)	TTS (NR_015457)	6974.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.47657726293849	5.74544757996597	5.89091080827555	6.15977852540439	6.20454340186808	6.19298131975056	0.841408254481979	0.00604419920553003	0.0701367690290657
Merged-chr18-60752183-4	chr18	60751689	60752689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3524.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	7.64834678790462	7.86209612035827	7.36482046577964	7.15542016241217	7.23151380218727	6.74557178834467	-0.849343605488981	0.00211901045688676	0.0322691475286665
Merged-chr7-114163107-4	chr7	114162555	114163555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-45274.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.26157676781306	4.28160700165231	4.7189306872165	5.02266142898666	4.61002419212625	5.12081563807935	1.18739596427752	0.00928396489423807	0.0955827952140264
Merged-chr12-86884134-4	chr12	86883650	86884650	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145836, exon 1 of 1)	5' UTR (NM_145836, exon 1 of 1)	664.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.64196916865208	7.87015634923094	7.72308516905813	7.85591036161039	8.04511283845334	7.86391270775952	0.256083960206395	0.251519780798071	0.649003529938392
Merged-chr14-50833554-2	chr14	50833054	50834054	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 43 of 55)	exon (NM_009351, exon 43 of 55)	25638.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	5.50356208531557	5.24239049804882	5.4340110113189	5.20989825865891	5.32977474156016	5.34778501631868	-0.196063398828523	0.570120277996907	0.869072933274727
Merged-chr11-79112952-3	chr11	79112486	79113486	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	33487.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.09078765119621	4.11768624557406	3.74958351302663	3.86103317087588	3.83712988327368	3.82133713098427	-0.508748316955852	0.330526936361678	0.721952410959523
Merged-chr16-3894227-2	chr16	3893727	3894727	+	656.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_153801)	TTS (NR_153801)	9608.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	4.94434735847782	5.47889699011121	5.52945516141078	5.41701210400073	5.20620123140808	6.24804852819227	0.672791915553978	0.134732531729393	0.490648365361256
Merged-chr17-23790599-3	chr17	23790095	23791095	+	796.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4379.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	4.73902661840306	5.00625038940814	4.87642378206149	5.64707995186887	5.57499579530743	5.3955600212261	1.35744363083257	0.000188075599704791	0.00475520951085878
Merged-chr5-140386377-2	chr5	140385877	140386877	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	2931.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	4.63933456260506	4.71445778486278	4.90912468605511	4.48573312024928	4.56388985190106	4.83426001586176	-0.293410562357303	0.483413609102385	0.826174950723369
Merged-chr1-58713972-2	chr1	58713472	58714472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_149258)	TTS (NR_149258)	686.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.29947272378013	7.54582022430737	7.65246939681988	7.71466161158664	7.79417650806573	7.69129084603447	0.33905350902385	0.144305746572802	0.507135240450538
Merged-chr12-40018284-4	chr12	40017774	40018774	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	19102.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	4.28496324259552	4.41050557903466	4.0630256143594	4.45942173728425	4.54396830062628	4.37723348685464	0.50648864513431	0.270215404117162	0.667203280387572
Merged-chr4-139131825-1	chr4	139131325	139132325	+	1000.0	f1_balb.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	-712.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	4.22625525880105	3.95050746369825	3.85598088394702	3.78722280925955	3.7347823491852	3.92618837877768	-0.663546643198064	0.205436876550221	0.596047563330878
Merged-chr19-32713500-2	chr19	32713000	32714000	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1202.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	3.22813273949077	3.17368284689869	3.25655499881874	3.15504847126517	3.20859288310264	3.58877525662217	0.424751521755245	0.50633538034478	0.838398065046031
Merged-chr2-29663570-2	chr2	29663070	29664070	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	43850.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.93971300138282	4.00494864366366	4.28108242468265	3.9268688209728	4.0593369249124	4.17761789968194	-0.0564273492614809	0.90985581102026	0.979661775170147
Merged-chr7-101388224-2	chr7	101387724	101388724	+	751.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 10 of 33)	intron (NM_001040111, intron 10 of 33)	2698.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.38484526270052	2.38801964070883	2.72897115199073	2.33117317615384	2.46438190662099	2.62481357459308	-0.173128866177353	0.835186928101894	1
Merged-chr4-137993409-4	chr4	137992903	137993903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172703)	promoter-TSS (NM_172703)	-53.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	7.44508186037239	7.16473703605724	7.32664880149629	7.24350279624755	6.87729937271332	6.74127054822027	-0.511649629808346	0.0571500848597176	0.308348091104097
Merged-chr1-152808406-4	chr1	152807944	152808944	+	935.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	8291.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	8.0770473801088	8.60422981234836	8.05536825516458	8.32729271925523	8.77163747707344	8.41756342944256	0.342847053621914	0.197615887334391	0.585772603516796
Merged-chr17-35241120-4	chr17	35240632	35241632	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019693)	promoter-TSS (NM_019693)	-614.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	7.94294353048098	7.84704517136885	7.68592417457999	7.70779626805885	8.01039381984833	7.61021085751692	-0.0537051233662319	0.823090787323216	0.958214218900685
Merged-chr9-61369622-3	chr9	61369138	61370138	+	892.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2728.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	2.94982869218831	3.01461056535661	3.02274765608982	3.21002394133143	2.76330293813623	2.91169951489557	-0.0947243839125334	0.894106420809419	0.975337673545585
Merged-chr10-75677822-2	chr10	75677322	75678322	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33814.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	6.04136421914686	5.79694624576348	5.89571471789438	5.61292166641876	5.72372098537987	5.7588475664334	-0.390401146018946	0.206304302282351	0.596855755513016
Merged-chr19-41318959-2	chr19	41318491	41319491	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-54987.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.01552791792649	3.17912090405142	3.25826331859242	3.23052625551882	3.18250761402853	3.32920341848883	0.396845645342228	0.532338497197139	0.851971173271146
Merged-chr5-99269916-2	chr5	99269411	99270411	+	770.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16984.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.34124035794662	5.48821391333458	5.42144631921352	5.20209782634626	5.43047581045724	5.36400466706105	-0.156055754175022	0.646987486725667	0.901147217868585
Merged-chr10-77604181-2	chr10	77603615	77604615	+	723.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1982.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	2.30886897533658	2.17103624231963	2.40479936286091	2.07229322089351	1.96852317512773	2.15694520528983	-1.82619652589352	0.0562833180656445	1
Merged-chr15-100126885-4	chr15	100126386	100127386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-27510.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.23104248423648	4.95158260743861	4.66690574611234	5.02951792228884	4.88811161176272	4.73538324054021	-0.19095667526545	0.64479337402655	0.900291423062745
Merged-chr12-32306591-4	chr12	32306091	32307091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72198.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	6.17056209038321	6.51623377750254	6.72908751578037	6.87263859670129	7.07278356511214	6.84733149435229	0.717719687292496	0.011812019220655	0.112906892051954
Merged-chr7-30412867-4	chr7	30412348	30413348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	-940.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	8.23664726914023	8.37527675639722	8.20692133044676	8.19633582102386	8.5386074362205	8.01621527247791	0.0015644487860858	0.994781336096483	0.998961028701257
Merged-chr4-63557923-3	chr4	63557433	63558433	+	806.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-830.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	8.46764985698844	9.09033385181345	8.24170154681291	8.83046961377236	9.19450894747852	8.13848258438768	0.192693449481242	0.718908205213169	0.927597598613345
Merged-chr2-157095457-5	chr2	157094871	157095871	+	905.994263	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177439, intron 5 of 5)	intron (NM_001177439, intron 5 of 5)	8316.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	4.54043325407386	4.37280808334293	4.58500021319689	4.79529262075461	4.63362201868757	4.56897760469496	0.423328423872615	0.314177763908999	0.708630922971455
Merged-chr17-34204074-2	chr17	34203574	34204574	+	752.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	-405.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	4.67754920740291	4.6713454727354	4.88271168932171	4.753063952997	4.63137172196184	4.9464590145105	0.076703313530262	0.850228123135308	0.964836457860265
Merged-chr6-43644039-3	chr6	43643544	43644544	+	725.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	22234.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	2.95267791772465	2.89985789837474	2.89978542654613	2.72414994460455	2.78941655289128	2.72442014562102	-0.875662894241875	0.222909098854435	0.617776133760918
Merged-chr9-88728556-2	chr9	88728122	88729122	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007536, intron 1 of 1)	intron (NM_007536, intron 1 of 1)	3228.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	3.72400783806254	3.75182790332699	3.85323342475745	3.9302523381841	3.83857990621571	3.54353902832441	0.0457874942390949	0.933194322723793	0.985356091252617
Merged-chr4-126030896-4	chr4	126030420	126031420	+	841.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 4 of 14)	intron (NM_001252651, intron 4 of 14)	6261.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	2.68972854077694	2.71827065160418	2.88832679951427	2.80277381653262	2.96071077259693	2.84033992706492	0.558888026535932	0.436627706456593	0.799551248563286
Merged-chr16-37011720-4	chr16	37011201	37012201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159369)	promoter-TSS (NM_001159369)	-85.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	5.41654433560776	5.57514119991445	5.62667545462986	5.81728593248115	5.73012751401345	5.81738050330861	0.458060703940131	0.146057831651997	0.509720845567433
Merged-chr8-119354037-2	chr8	119353537	119354537	+	565.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9499.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.37123167541792	3.2059332140566	3.31594395776139	3.32501720668359	3.14097919702303	3.274008679952	-0.218037222933414	0.725089956581456	0.929505969181878
Merged-chr10-34132148-6	chr10	34131635	34132635	+	744.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4163.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	6.68524869616086	6.68422791817574	6.46954647244304	6.66656944438339	6.68497861002502	6.65200080997642	0.0700109394117429	0.78601471501197	0.948291441179603
Merged-chr1-152532900-2	chr1	152532400	152533400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	92317.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.24016623059412	6.22475123543657	6.65708471139378	6.26970826113745	6.41073145795206	6.41703867204631	-0.016375066668207	0.955220636279178	0.98974202431386
Merged-chr11-75587671-4	chr11	75587196	75588196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	-383.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	7.92450599845987	7.71042723523902	7.70267598702269	7.4859213430056	7.91563279806928	7.5612606120869	-0.157004763910059	0.524979722136903	0.84884700169621
Merged-chr4-40293027-2	chr4	40292527	40293527	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	-13606.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	4.70186999685062	4.87910853334019	5.14076431989707	5.63786131116893	6.0274416401339	5.63115692609176	1.75003571491654	2.30236277910391e-06	0.000113223996526997
Merged-chr9-106202590-2	chr9	106202114	106203114	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	-494.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	5.33248312800845	4.98478131908608	5.48679512485718	5.17445152799448	4.99579919165538	5.16328329841641	-0.341628888362556	0.367216602309668	0.752113401392775
Merged-chr13-52619695-4	chr13	52619236	52620236	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	22854.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.16794597954653	6.05257959993503	6.16320740890921	5.56893877208741	5.86995466341607	5.73484053526971	-0.684140449715642	0.0252886958404747	0.188325842520532
Merged-chr8-105384384-4	chr8	105383864	105384864	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 15 of 15)	intron (NM_001301173, intron 15 of 15)	8983.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	3.24609492523811	3.68804864535007	3.4126938061388	3.64765898078204	3.43857228571876	3.36838936816684	0.0903946732274604	0.884282249395199	0.973466734537782
Merged-chr11-11557319-3	chr11	11556817	11557817	+	836.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68051.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.40145364713628	3.20667547217861	3.32107546452653	3.26219666279584	3.35635688450812	3.55086072750157	0.309743630233653	0.612687745723	0.886888853880768
Merged-chr5-121830379-2	chr5	121829879	121830879	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306128, intron 1 of 7)	B1_Mm|SINE|Alu	5725.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	4.00985573702865	3.83160620405714	4.62574480288902	4.14234225298141	4.14838919531235	4.35100984817286	0.0588476535413445	0.913306477400776	0.980560320145079
Merged-chr10-67748808-4	chr10	67748299	67749299	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163863.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	5.54470448055797	5.32536500525219	5.37180185412956	5.13775579065204	5.39417550115313	5.24536141536403	-0.296431505005584	0.396945522463147	0.773848546396843
Merged-chr11-115929966-4	chr11	115929444	115930444	+	909.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130454, intron 2 of 18)	intron (NM_130454, intron 2 of 18)	3548.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	4.78559719584402	4.51216295250402	4.10602465695788	4.43553114470198	4.57550772039066	4.59982693121745	0.0707593262701677	0.882143632171788	0.973028889996157
Merged-chr10-84577402-4	chr10	84576885	84577885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146008, intron 1 of 9)	CpG	438.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	7.48979028394859	8.1294480178142	7.52986766268797	7.81104645368909	8.12138836768386	7.31645101457717	0.0608341665389626	0.846940380950359	0.964139319360833
Merged-chr4-119083011-4	chr4	119082518	119083518	+	852.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13907.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	2.94393744521031	3.15491197889822	2.76206526624124	2.92597921258066	2.89438253193469	3.14296950754284	0.0880177257161566	0.903183286871219	0.977756599430303
Merged-chr15-73748387-6	chr15	73747915	73748915	+	888.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008975, exon 1 of 6)	5' UTR (NM_008975, exon 1 of 6)	389.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	3.91777515449955	3.98794574331421	3.97785813798295	3.97263092692173	3.62329942915158	3.79592922221296	-0.502897811436114	0.338406414972654	0.728352844724381
Merged-chr13-102682881-5	chr13	102682452	102683452	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.53459895410468	5.36800323879432	5.72636334476898	5.87147065013124	5.88169143299487	5.5411039078034	0.44812139363139	0.179305830001164	0.560826955709388
Merged-chr2-167352719-4	chr2	167352235	167353235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3557.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.48065298516125	6.33175907653873	6.33563740504245	6.61626179057122	6.53146679997322	6.4339322217632	0.236325190001327	0.376154088118644	0.759077180029979
Merged-chr4-53441324-4	chr4	53440821	53441821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	intron (NM_133891, intron 1 of 15)	908.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.1503398028069	4.64045062945584	4.9698484549193	4.54187818393637	4.49109070976334	4.62238465228032	-0.902264745738618	0.0340679108410119	0.225773805322211
Merged-chr17-84936531-1	chr17	84936031	84937031	+	593.0	f0_balb.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20210.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	2.72887172542103	2.81314719361531	2.95390051322579	2.80856510986327	2.67268210322792	2.96827835316024	-0.0777803603440006	0.914623932832495	0.980912729144991
Merged-chr14-45218878-2	chr14	45218378	45219378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	547.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	6.59698909548928	7.06821079141397	6.55886110098649	6.93008220827817	7.10564752712912	6.92343997808625	0.337696590704189	0.231938060260755	0.628103303982846
Merged-chr18-53257084-2	chr18	53256584	53257584	+	793.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	B1F|SINE|Alu	11422.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.75678267527812	6.3097233265535	6.15759911575213	6.14008749889685	6.17220245959337	6.15216349275203	-0.478009942487805	0.121032995000051	0.465240419467863
Merged-chr3-83995538-4	chr3	83995024	83996024	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	44637.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	2.40861931239583	2.27521654377586	2.44972859699337	2.23456877250504	2.26278904391627	2.19684481340071	-0.982100511052132	0.255508891795643	1
Merged-chr16-4557460-2	chr16	4556960	4557960	+	685.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	2260.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	2.06195237430894	2.1895779857695	2.27349667499513	2.28090310154736	2.18114898481862	2.47452970184202	0.955092044886353	0.281380787688931	1
Merged-chr2-153162470-2	chr2	153161970	153162970	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1169.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.17156999021818	5.84409606367113	6.28069218026771	6.37801464874229	6.42954292843871	6.04164762937896	0.335852111538092	0.278302519367583	0.675564386240092
Merged-chr6-97495285-2	chr6	97494783	97495783	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-7463.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.1072307624758	2.87739943489512	3.16842458544005	2.70642240267107	2.70196301372146	3.13032306906446	-0.953477239190461	0.204074719676149	0.594331639593049
Merged-chr10-111507152-3	chr10	111506667	111507667	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	881.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	5.01869289889151	4.58284938362001	4.53455276211804	4.38115748202054	4.33347249965335	4.55976848402204	-0.774090901596992	0.0839872333529763	0.383620229062659
Merged-chr7-100508837-4	chr7	100508335	100509335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	URR1B|DNA|hAT-Charlie	5980.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	7.0626463928702	6.72444076983437	6.44901865076169	7.32330026226887	7.53518427051762	7.10755819094686	0.844736868701939	0.0036695857369583	0.0488151702639211
Merged-chr2-153292625-6	chr2	153292133	153293133	+	983.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	1217.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	4.94523875210205	4.92654742276107	4.69107182561084	4.9295877988318	4.87331407216165	4.53862921222512	-0.145614155819713	0.722997352317748	0.928984275173032
Merged-chr9-37614451-2	chr9	37613951	37614951	+	795.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	604.0	NM_011734	22619.0	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding	4.1300430330674	4.15246915074302	4.3724435967511	3.93814965627553	4.15520056662902	4.08705306052292	-0.421052680948771	0.384249864216984	0.765372305782707
Merged-chr12-110736787-2	chr12	110736287	110737287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1110.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	2.95226291455233	2.93456737943201	3.02430599211124	2.97802142739846	3.02089567005063	2.97748276234955	0.118807487562235	0.858870327473318	0.96702230262239
Merged-chr1-162564419-2	chr1	162563919	162564919	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6096.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	4.65154973157788	4.65619709564577	5.00000112999192	5.06314119325436	5.06266305947946	4.96008607838007	0.591292308488567	0.131030937108019	0.483795802932377
Merged-chr11-50378503-4	chr11	50377997	50378997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 2 of 12)	CpG-1904	778.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	7.88690949832593	7.95674359787501	7.73849415343225	7.75102709177085	7.81942314139663	7.97192160470176	-0.0300597314861975	0.891965450555686	0.974942585822634
Merged-chr6-145101162-3	chr6	145100725	145101725	+	931.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14411.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.65536801703621	3.49112196437989	3.6471807911671	3.46262979260343	3.56694714567736	3.55923819479729	-0.238473685332479	0.672280705719207	0.910756996322765
Merged-chr1-179434935-4	chr1	179434409	179435409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	83132.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	4.95846572242962	4.82370517356459	5.3172722723126	4.89911769565709	4.89005684349229	5.26429810764271	-0.0394842937845746	0.922303081087256	0.982542868764899
Merged-chr10-125391152-2	chr10	125390652	125391652	+	890.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62189.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.15514581446367	4.69728514546367	4.84565340445823	5.08656870076888	4.84963825362606	5.02126929701596	0.146077433432465	0.716921006806663	0.926902065545368
Merged-chr13-52533855-4	chr13	52533347	52534347	+	934.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3011.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	4.04352106316061	3.68393176844493	3.65344984014592	3.33889030848863	3.55557765501365	3.5599883893851	-1.11172751155644	0.0594322583869986	0.315646860015662
Merged-chr13-37482237-3	chr13	37481744	37482744	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136899.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.9219018588278	4.44001876148332	4.87841306656976	4.25676484560619	4.39835468160757	4.30261105602491	-1.07661570859103	0.0185511728630328	0.153837551483679
Merged-chr15-103340209-4	chr15	103339725	103340725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013866)	promoter-TSS (NM_013866)	-139.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	4.61970552820688	4.84693595789523	4.90570787858985	4.89651585944044	4.73584789679983	4.78621283040994	0.0338303519183802	0.932399951233813	0.985107612655075
Merged-chr9-123938416-2	chr9	123937916	123938916	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30276.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.02346818831145	5.04593112685502	5.48077485421284	4.7741328862054	4.7774096384212	4.86347963019494	-0.833188932740473	0.035421738103427	0.231033832909799
Merged-chr6-112739809-3	chr6	112739330	112740330	+	710.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 15 of 21)	intron (NM_080448, intron 15 of 21)	-43160.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	6.14833481109587	6.2390102607602	6.26608464181227	6.24611567960377	6.3140989135149	6.26612114320594	0.102608091791188	0.707892716930957	0.923606271223831
Merged-chr10-117281682-4	chr10	117281183	117282183	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	589.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	7.93579376196246	8.04213518825599	7.62202199480263	7.74776284414134	7.87424331172009	7.42821247883919	-0.25807914807341	0.309453405202601	0.705007774281905
Merged-chr1-57970096-4	chr1	57969616	57970616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027630)	promoter-TSS (NR_027630)	-32.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	6.22764021846816	6.1845475331545	5.96212371845419	5.90272368847854	5.92830818661073	5.76873062527988	-0.456069107973692	0.125574796352926	0.474177845108014
Merged-chr10-42268797-4	chr10	42268207	42269207	+	796.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	8035.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	5.14823447888463	5.24752944498356	5.52619218880168	5.58927311214664	5.55485983996283	5.41603075094169	0.431427502538086	0.211138409060584	0.603517854383822
Merged-chr16-57178017-2	chr16	57177517	57178517	+	579.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358434, exon 12 of 15)	exon (NM_001358434, exon 12 of 15)	-10685.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	3.37470694432961	3.40452769248567	3.4505100390145	3.46746554348845	3.53540178706528	3.87049528385282	0.796563583892728	0.175306789124548	0.555104320042256
Merged-chr17-36257693-7	chr17	36257183	36258183	+	857.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026308, exon 2 of 5)	exon (NM_026308, exon 2 of 5)	163.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	4.65404242148552	4.84175361173442	4.96765408121331	4.99967459472639	4.95299090803238	4.99741113020876	0.35919522564005	0.351443703387577	0.739299452698803
Merged-chr4-6452187-2	chr4	6451687	6452687	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	MER53|DNA|hAT	2084.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	6.60262273820525	6.89246767076236	6.5048265335607	6.84659293049842	7.12999460431536	6.67148928280534	0.344791303045897	0.226621536350869	0.62156609505752
Merged-chr7-19345284-6	chr7	19344732	19345732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127324, intron 1 of 6)	CpG	161.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	4.35416732518413	4.02860425396086	4.14812528904937	4.57354216506507	4.39347564884302	4.48816264572579	0.785193938418542	0.0893375865999721	0.39703456962794
Merged-chr2-145881218-4	chr2	145880764	145881764	+	971.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-21977.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.68548536215994	4.46906782415281	4.52290881718338	4.68085702835766	4.39333544285518	4.54790633904785	-0.055926983124757	0.896533612027412	0.975838835430135
Merged-chr4-132035922-3	chr4	132035469	132036469	+	732.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	13109.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.78341594759802	4.7180730514743	4.80881104175288	4.72470803428319	4.62895600017488	4.8737704122067	-0.0718999603252898	0.856650670353891	0.966560323116284
Merged-chr4-19681705-4	chr4	19681192	19682192	+	806.491089	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	27312.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	5.87103170203323	5.93122461151002	5.52223867558665	5.31306564915574	5.44455660634576	4.99301544442024	-0.975112905326369	0.00747456835301492	0.0819317459514774
Merged-chr4-6227272-4	chr4	6226762	6227762	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	36157.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	3.85095844348898	3.69177441309128	4.04651206849695	4.66146660719689	4.78062323873565	4.57041283010694	2.30455897743389	2.32926526973642e-06	0.000114399982453423
Merged-chr16-85151098-3	chr16	85150565	85151565	+	823.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	22642.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.94071057206674	5.03509530851954	4.47015315163907	4.3256857713972	3.94957122572662	4.49487285084179	-1.44684854030145	0.002932729977166	0.0414236285757984
Merged-chr12-85476182-10	chr12	85475623	85476623	+	989.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010234, exon 4 of 4)	exon (NM_010234, exon 4 of 4)	2233.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.75995105405628	4.47778238986473	4.26286063734705	4.0389276778266	4.26689804566859	4.33192903080098	-0.800921883865793	0.0930900158276073	0.406440169611975
Merged-chr13-113871065-2	chr13	113870565	113871565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76557.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	5.69192460110943	6.01886911211657	5.88216857288866	5.55631148936542	5.5467388198672	5.3945435219826	-0.670048878779801	0.0392831077059152	0.24603024330405
Merged-chr12-52307790-4	chr12	52307298	52308298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	172811.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.91224272850658	7.01426737005443	6.51547522653134	7.30462649929097	7.58168459424584	6.65157315721083	0.617030446966183	0.0615443010101249	0.321848224926048
Merged-chr1-39478090-2	chr1	39477590	39478590	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	657.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	4.94063607760186	4.65967951912075	4.96262993328534	5.10949144501199	4.79528388385089	4.5487548528883	-0.0274093256440115	0.948554224904791	0.988151190239158
Merged-chr13-41230499-4	chr13	41229995	41230995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-10092.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	3.79556920879953	3.79434386069306	4.29847965533184	3.62795394037904	3.46495232484207	3.8479226248608	-1.05890662998397	0.0670883228722525	0.338599372656964
Merged-chr2-128721508-1	chr2	128721008	128722008	+	604.0	f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	22593.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.94336606812383	5.89753577300082	6.02132754087013	6.21335599240094	6.1831071056274	6.19007554174881	0.419935583603429	0.137916969566363	0.496333880789271
Merged-chr12-4536699-4	chr12	4536207	4537207	+	937.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12594.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	3.81584542605036	3.56798708069187	3.93933669641277	3.51359410840569	3.71743056842268	4.00685330710831	-0.0736417835215867	0.897372850500731	0.975989045047592
Merged-chr7-80758946-2	chr7	80758453	80759453	+	666.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 8 of 37)	B1_Mur2|SINE|Alu	44378.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.32736681162607	3.41097396822588	3.45616840569628	3.37760451658119	3.31147396250823	3.8221280571333	0.432157407341175	0.483080997234016	0.826004252216208
Merged-chr10-93489980-1	chr10	93489480	93490480	+	713.0	f1_balb.idr	intron (NM_010401, intron 2 of 19)	intron (NM_010401, intron 2 of 19)	1212.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	3.12960112762175	2.96555363110992	2.96884456921769	2.98143323482349	2.82660153899156	3.04160698787317	-0.366377426924308	0.592750006264466	0.878232594751668
Merged-chr10-21997859-1	chr10	21997359	21998359	+	576.0	f0_c57.idr	intron (NM_011361, intron 9 of 11)	intron (NM_011361, intron 9 of 11)	3193.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.46782053841292	5.06142216542461	5.13406919383775	5.50814939376417	5.30697688296353	5.42452064537742	0.342826995805535	0.344506261700491	0.733150745942016
Merged-chr11-78213894-2	chr11	78213394	78214394	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 28 of 36)	B1_Mur4|SINE|Alu	20502.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	4.30955911343605	4.71582088339404	4.49838374600118	4.52727589944642	4.4963845941148	4.5231754895146	-0.0203311552784198	0.963109517003741	0.991042187277023
Merged-chr12-52625611-2	chr12	52625111	52626111	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23289.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	3.49005824668137	3.48218106160171	3.41962738321991	3.53313488261447	3.49693374915396	3.89647352599981	0.637262200851743	0.275756139560886	0.673242318833586
Merged-chr3-90433621-4	chr3	90433141	90434141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145540)	promoter-TSS (NM_145540)	-5.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	7.47374332028145	7.57299638344394	7.42377284813177	7.28581382435631	7.60362730038393	7.50139884757235	-0.0308763874377534	0.89565397962772	0.975665889379756
Merged-chr3-107133063-2	chr3	107132529	107133529	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	31462.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.69051521431387	5.03812455671109	4.75471145674638	5.0797744366471	4.96337889730266	4.60885717240238	0.144478245637232	0.729855169157191	0.930635866770147
Merged-chr2-172400114-4	chr2	172399606	172400606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	L2c|LINE|L2	6312.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	5.73098605775452	5.2548767857319	4.88234451590013	5.31001088625505	4.99349980718173	5.10530827705589	-0.415130685417014	0.322354048393567	0.715837620996315
Merged-chr11-53898403-4	chr11	53897916	53898916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-6713.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	3.82288087066689	3.84348826999343	3.90700092648107	3.70063789821876	3.68990289814012	4.11146478735103	-0.0578540922236236	0.9142427565078	0.980912729144991
Merged-chr9-118864684-2	chr9	118864184	118865184	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-61852.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.30203670174256	3.35897619857	3.58324888079472	3.21877197833846	3.46315261553141	3.55114110195456	0.0102726598512053	0.986586178049695	0.997063455776714
Merged-chr15-83145723-4	chr15	83145215	83146215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	3663.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	5.59228649044688	5.09185360574804	5.50735846710249	5.67170841250024	5.58625574958902	5.45306662982608	0.315449684663582	0.376597285722616	0.759336465825071
Merged-chr5-100616907-4	chr5	100616403	100617403	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44698.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.62354189916957	4.76724405310932	5.0672357380316	5.22679045120775	5.26966063657541	5.1316060161143	0.850289086616438	0.0271377747755587	0.196235331843633
Merged-chr5-24453636-2	chr5	24453136	24454136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1459.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	5.28428526043026	5.43760908522218	5.64996514611772	5.14604666227692	5.49882478474186	5.41122259167024	-0.179416381928448	0.614824921814421	0.887639829057119
Merged-chr13-37959459-4	chr13	37958964	37959964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34744.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	8.19713107168517	8.19878717336666	8.03165768135765	7.81089068770568	8.07654873282378	7.78479336151105	-0.345200665415873	0.123982239330546	0.471278757298044
Merged-chr14-70159521-4	chr14	70159008	70160008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-6.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	5.08950166348397	4.93944646758218	5.14549736120672	5.2284683073701	5.20103909562916	4.96322431551081	0.186047593258825	0.613784222381047	0.887300906025089
Merged-chr3-79248267-1	chr3	79247767	79248767	+	827.0	f0_balb.idr	non-coding (NR_045502, exon 2 of 3)	non-coding (NR_045502, exon 2 of 3)	35348.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.6487573804783	3.81343765490964	3.94743640072145	3.73028166624599	3.63494974291748	4.23030537965676	0.242540990763264	0.669321430416882	0.909615408611738
Merged-chr15-58215965-2	chr15	58215465	58216465	+	942.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1073.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.70102054351522	7.86491763550906	7.92782226116414	7.63651867291324	7.82441144768024	7.55212372138268	-0.214917137035616	0.348057169310188	0.735982909356061
Merged-chr3-31091335-3	chr3	31090835	31091835	+	859.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3723.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.24804516475014	3.49860831336689	3.65889937801683	3.58878514456293	3.69160178569582	3.77775460097497	0.756448217853935	0.197025219064436	0.584870414852249
Merged-chr11-75532069-4	chr11	75531561	75532561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199283)	promoter-TSS (NM_001199283)	-51.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	7.24865095559024	7.18668644250165	7.03664701746508	7.284220621164	7.42507035373792	7.10798005416458	0.181712113634324	0.457573593387458	0.812344696037543
Merged-chr14-47000596-4	chr14	47000107	47001107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163433)	promoter-TSS (NM_001163433)	-733.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	7.22180344050917	6.17904195989167	6.58170612248906	7.39633702118867	6.69208255057929	6.6589969952882	0.345951094864679	0.556725516368265	0.8637300661975
Merged-chr6-93962533-3	chr6	93962013	93963013	+	835.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-48823.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	3.85936231303122	4.2405539316801	4.25185160708627	4.00329118928667	4.04972519846678	3.72637232843661	-0.541117747055049	0.309063239110759	0.704802606494279
Merged-chr8-11015801-4	chr8	11015258	11016258	+	945.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7328.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.68823339294604	5.89431082684674	5.40194536318129	4.77411821587461	4.86911077386359	4.72979382700053	-1.81064394447539	1.94606955802741e-06	9.71960118753568e-05
Merged-chr6-136940176-4	chr6	136939659	136940659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-632.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	6.77987995970279	6.73987944945754	6.93661754868821	7.36317905112491	7.74322494493702	7.47899381100308	1.0935252789425	1.26752542856767e-05	0.000490094125744697
Merged-chr7-41599806-3	chr7	41599314	41600314	+	666.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33717.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	4.79990842581891	5.00391739504685	4.73260655736677	4.8115115114488	4.97577023480305	4.58804728927877	-0.0969931090995358	0.81347958698959	0.955940138311315
Merged-chr9-65534740-3	chr9	65534246	65535246	+	926.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45341.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.47780385667362	8.2278244978958	7.92749387907505	8.06189453972844	8.33799496024301	7.64053276932014	-0.255310910805461	0.362904205902495	0.748463907111738
Merged-chr7-145110842-4	chr7	145110349	145111349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97270.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.40318920164832	8.35696336534163	8.16748563469474	8.45283781240987	8.82029433567361	8.02487181752825	0.233054140392846	0.38516949065629	0.766242799228034
Merged-chr19-11912304-4	chr19	11911803	11912803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172635)	promoter-TSS (NM_172635)	-96.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	9.26703903127883	9.34765519032546	8.77290214845932	9.12058986275034	9.19118620833634	8.77519383760134	-0.154122473245382	0.537903530543585	0.854892120513238
Merged-chr13-8986561-2	chr13	8986061	8987061	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 8 of 16)	intron (NM_027000, intron 8 of 16)	9451.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	3.42018808681801	3.47075813454292	3.21750761422127	3.76186966256855	3.69610027363939	3.64422232400099	1.15730091117487	0.0515050765154016	0.289374369121778
Merged-chr19-17276209-3	chr19	17275681	17276681	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	63324.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.06762816790144	4.07226006730266	4.54535070581518	6.53135552412508	6.98032563757681	6.21407714435182	5.59078106193145	1.02562011990409e-25	1.93954088493136e-22
Merged-chr2-124879932-2	chr2	124879432	124880432	+	601.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188195.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	2.59078778750783	2.88001771052595	2.8465955835231	2.81990717850413	2.91293122297845	2.97854593023682	0.628647686326764	0.391491586639306	0.77052313975368
Merged-chr14-63411165-4	chr14	63410657	63411657	+	940.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6030.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	7.33085233480356	7.81989549218691	7.71169877983285	7.4343375260842	7.79744182075227	7.11228892298053	-0.214802631170664	0.458749318422734	0.813236440920954
Merged-chr14-65343745-4	chr14	65343204	65344204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14972.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	6.31976031444934	6.38259949968733	6.61695200405367	6.58742288104734	6.56076708479655	6.75293154296747	0.311624425581539	0.248975919931959	0.645926116849015
Merged-chr8-12755516-3	chr8	12755021	12756021	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1495.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	2.93294038782793	2.87953206277681	2.96446628870117	2.67305143454852	2.59099532879347	2.9789025120914	-0.899325906731121	0.230047564388593	0.625817164441292
Merged-chr5-64233405-5	chr5	64232904	64233904	+	848.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	3047.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.57496225000229	5.78044422873955	5.91959790640609	6.52780850077659	6.10049023371386	6.13932570359627	0.887178314890889	0.00528861937397021	0.0635734528849051
Merged-chr18-70622549-4	chr18	70622056	70623056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	54264.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	5.99868089104305	6.30134029268092	6.11815256784019	6.29342052200003	6.33498832720942	6.39914257811385	0.320655814956057	0.259331222515655	0.656900978680461
Merged-chr4-150587840-2	chr4	150587340	150588340	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	64334.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.4796327354424	6.50029465656239	6.25774232789049	6.99402166996501	7.05458283915595	6.42341890854336	0.698079356148559	0.0197360047249152	0.160057844166739
Merged-chr14-25461259-8	chr14	25460650	25461650	+	960.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	1965.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.8669377901486	8.08807006560027	7.93874664006491	7.72459112799163	7.74865604602382	7.34771448145584	-0.488453093064348	0.0419072119156342	0.256136186991603
Merged-chr19-40596532-1	chr19	40596032	40597032	+	590.0	f0_balb.idr	TTS (NM_026260)	TTS (NM_026260)	-8069.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	2.85314209974497	2.68608220938161	2.82207196355461	2.73816909490184	2.54912091378837	2.77337744486779	-0.549672108326689	0.461743268815796	0.815107818354545
Merged-chr15-102247730-4	chr15	102247259	102248259	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	CpG	-1259.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	6.91049858810643	6.68469423716495	6.55371635416644	7.66057906531549	7.37601833282591	7.08597845449776	1.01183048986247	0.000293171384173069	0.00683811341064013
Merged-chr3-130709716-4	chr3	130709205	130710205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025509)	promoter-TSS (NM_025509)	-261.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	7.31369307360042	7.5420141309309	7.09253526226154	7.4875243650257	7.5391065719528	7.02525495323622	0.0641384768907524	0.815446488913066	0.956370078970016
Merged-chr4-150465984-2	chr4	150465471	150466471	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	184055.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.40680566578832	2.30599030282187	2.55093538629144	2.38313608280164	2.58025193757146	2.29968528914378	0.0605691205114618	0.943075127082334	1
Merged-chr16-57902726-4	chr16	57902225	57903225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147988.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	4.15566748783488	4.27056177896663	4.32043170680131	4.00230047267741	4.07649594328465	4.25800013926048	-0.384373675441097	0.415679303593237	0.78656116488557
Merged-chr3-61400760-2	chr3	61400260	61401260	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.99119303255798	4.15424056403103	4.39420560499728	4.21990215991713	3.73604282094486	4.16383366557033	-0.377470845748123	0.472674684987297	0.820550293768681
Merged-chr5-51551996-2	chr5	51551500	51552500	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132764, intron 1 of 12)	intron (NR_132764, intron 1 of 12)	1921.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	3.09752405948123	3.1504613779097	2.9312743120207	3.18573588228478	3.05841092320497	3.12838308807623	0.242379672909476	0.714352466342892	0.925873245006649
Merged-chr3-116513088-4	chr3	116512583	116513583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357344)	promoter-TSS (NM_001357344)	13.0	NM_010022	13171.0	Mm.3636	NM_010022	ENSMUSG00000000340	Dbt	BCKAD-E2|D3Wsu60e	dihydrolipoamide branched chain transacylase E2	protein-coding	4.16339201282543	4.09969599371248	3.88538478009694	4.07046620032785	4.08436539326703	3.84845820017581	-0.144347114624479	0.774963666368152	0.944517829695789
Merged-chr10-59578236-4	chr10	59577725	59578725	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	38467.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	4.39044583469239	4.02789923263204	3.94327979361861	4.0451197500936	3.89354444357204	3.909233767683	-0.561900007962882	0.274430074963482	0.67173427081911
Merged-chr17-84268464-2	chr17	84267964	84268964	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80517.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.6261442952076	6.50629714353693	6.00129459604382	6.18970266470258	6.63907612154115	6.46884088177725	0.0532845929240957	0.86804322184373	0.969593336687463
Merged-chr6-116459405-3	chr6	116458923	116459923	+	757.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1755.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.4083650839104	4.39059983071015	4.49567742094347	4.09169766797499	4.10239598517766	4.44073230398571	-0.585793112729152	0.2047983155828	0.595480247510696
Merged-chr16-17070157-4	chr16	17069649	17070649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291053)	promoter-TSS (NM_001291053)	10.0	NM_001291047	106369.0	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee like 1	protein-coding	2.49813089918319	2.71369585653437	2.72846743718637	2.73489976672255	2.39640849681532	2.67877114718382	-0.22628182620616	0.777574704733118	1
Merged-chr4-154928995-4	chr4	154928485	154929485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-908.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	8.74024101255106	8.69978517429513	8.40277827039831	8.55134590282381	8.9662252261748	8.42849503633367	0.0694074725939223	0.77852133573335	0.945520893795831
Merged-chr15-94588282-2	chr15	94587782	94588782	+	803.799988	f1_balb.idr|f1_c57bl6.idr	exon (NM_008971, exon 2 of 9)	exon (NM_008971, exon 2 of 9)	1542.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	5.46206002693676	5.83001864230508	6.01152616795997	6.03986923782691	6.05431044372691	6.0502939001134	0.476201548060886	0.138978106217077	0.497979944109487
Merged-chr19-11324252-4	chr19	11323768	11324768	+	778.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027836, intron 5 of 6)	intron (NM_027836, intron 5 of 6)	10427.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	3.58666204924874	3.21204580070375	3.41550406440714	3.25544310612658	3.49170711372022	3.43134473911995	-0.059963732324651	0.922973969085973	0.982629432513311
Merged-chr12-104174463-2	chr12	104173953	104174953	+	810.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20581.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	5.48764225846396	5.19329151453095	5.05973282636683	5.54148145309137	5.8236658392014	5.20087482501436	0.565499343053221	0.141661184503414	0.502372712168617
Merged-chr3-88137670-3	chr3	88137097	88138097	+	825.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4775.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	5.55257572343007	5.91209962324084	5.9549340127029	5.64829725224017	5.49605621611754	5.08903395161505	-0.689206744998752	0.0593105227973416	0.315444778246871
Merged-chr6-50306838-4	chr6	50306351	50307351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-45082.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.82884810024991	4.50320591228803	4.66092606025336	4.53944234647707	4.60426537499344	4.3355615112271	-0.39796099127527	0.360514878403345	0.746695386038931
Merged-chr8-122474023-4	chr8	122473518	122474518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2046.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	6.55910659212552	6.65372482716108	6.76866091006818	6.66045395433725	6.64066238435877	6.62233079218883	-0.0252775645432114	0.921298140457716	0.982526400261012
Merged-chr11-57524821-3	chr11	57524308	57525308	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	6143.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	3.39009841920821	3.39869294276155	3.39024647351034	3.17936681971411	3.13387534549133	3.29439651178855	-0.797297730041712	0.194442706722022	0.581734098264273
Merged-chr8-66457366-2	chr8	66456866	66457866	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 7 of 7)	intron (NM_175188, intron 7 of 7)	29164.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	3.03983105695733	3.21722332679833	3.42564279120455	3.10410907418194	2.84679430227552	3.23086055208234	-0.728514060601393	0.291689492362639	0.689198857889432
Merged-chr5-100750789-4	chr5	100750289	100751289	+	907.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31073.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	3.38879087480845	3.30143657659612	3.08231776697156	3.18949480428349	3.01489050029023	3.2149438920521	-0.565153843349839	0.387781372542399	0.767721672469137
Merged-chr14-55142641-2	chr14	55142141	55143141	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-25706.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	3.73015992804455	3.49938776120708	3.4120734419617	3.48531921819052	3.62634715331272	3.48450124857836	-0.0775579537529045	0.894388934433633	0.97547960383733
Merged-chr12-85343747-2	chr12	85343247	85344247	+	961.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 4 of 4)	PB1D10|SINE|Alu	-4385.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.41140391307205	6.2531182055776	6.7687356078195	7.11130544826719	7.64810179736502	7.37595724579757	1.40695798917654	1.27837915117319e-06	6.74089812489347e-05
Merged-chr1-181150945-4	chr1	181150434	181151434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030131)	promoter-TSS (NM_030131)	3.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	5.43844340814577	5.48769444288612	5.12815578078614	5.60124225713087	5.13744932230271	5.04514573806378	-0.158024079278144	0.681928841884914	0.914908045004202
Merged-chr2-68873280-4	chr2	68872791	68873791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11850.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.33565945755565	5.15614722425314	5.32522596810971	5.42295730808914	5.54802749948243	5.38877412580972	0.372797227452015	0.272687661480352	0.669951714189667
Merged-chr7-92884571-4	chr7	92884065	92885065	+	834.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	9312.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	5.89125173154279	6.03378853767133	5.67731541032827	5.9499601003467	6.48640820610521	5.95342351857196	0.490974316955253	0.144306329777755	0.507135240450538
Merged-chr5-105138336-4	chr5	105137845	105138845	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008620, intron 1 of 10)	intron (NM_008620, intron 1 of 10)	1241.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	5.18258945224769	5.05977473814152	4.97602966909819	5.8691156715382	6.0333630319412	5.64095267213679	1.50370134394472	1.40630016728149e-05	0.000537754707349071
Merged-chr8-113635384-4	chr8	113634865	113635865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173015)	promoter-TSS (NM_173015)	-221.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	7.88031289379202	8.39603838307975	8.1071638969109	8.29231888234752	8.56180626494086	8.20385571755635	0.305475780746996	0.220232449106394	0.614599010846764
Merged-chr9-105408233-3	chr9	105407748	105408748	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	7460.0	NM_001164828	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	3.62648570803679	3.30486527948464	3.63301438233129	4.29357244032441	4.64478015279823	4.671304598353	3.30098596417991	3.38450886227695e-08	2.73947678416674e-06
Merged-chr16-78215292-2	chr16	78214792	78215792	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40162.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.14705708303141	3.09291630973368	3.13652441703874	3.04194907192195	3.02942440277882	3.26339786909215	-0.0689563621978203	0.915382631276674	0.980959026698783
Merged-chr18-78142845-4	chr18	78142356	78143356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-737.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	7.5553055686812	7.38428281656397	7.40881391270817	7.35906811706885	7.47994973298872	7.22670244084223	-0.127847054954924	0.585199606361026	0.874897384757946
Merged-chr5-115155534-1	chr5	115155034	115156034	+	595.0	f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2642.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	3.55753539421646	3.61440597883712	3.54710239022974	3.46479542397619	3.3694017219255	3.8649626514713	-0.00106837354795429	0.998560738313743	0.999738201342918
Merged-chr17-34262291-1	chr17	34261791	34262791	+	974.0	f1_balb.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-936.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.64462982375601	6.4859753116874	6.48992544452007	7.42534628779911	7.86642871491153	7.02604373771024	1.4448556043736	1.50732375277485e-06	7.77084230612702e-05
Merged-chr19-5807924-4	chr19	5807425	5808425	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5253.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.18174793265052	6.85388281996535	7.05657184424809	7.27440817552426	7.20001201976192	7.17747090178503	0.273809905061046	0.265888524747169	0.663708296848935
Merged-chr10-75922323-2	chr10	75921823	75922823	+	556.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161853)	promoter-TSS (NM_001161853)	-709.0	NM_001161853	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	4.11809046665796	4.41044464972532	4.24342252112063	4.30077614147798	4.23578749152815	3.85173155265412	-0.305960434627605	0.543423490006046	0.857551302506722
Merged-chr6-40576007-4	chr6	40575519	40576519	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	4631.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	5.90801238558683	6.01914406386851	6.35359764743291	5.86830560862545	6.04275438206442	6.20702696392036	-0.0938463831854132	0.764325118238381	0.941979298344481
Merged-chr7-101300577-3	chr7	101300064	101301064	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152152, intron 1 of 16)	intron (NR_152152, intron 1 of 16)	1524.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	3.7044577999189	3.28462287514195	3.15890536986738	3.50683802545563	3.39230135927722	3.73897188301188	0.50473418978245	0.442024365445296	0.803073503787684
Merged-chr8-95138972-2	chr8	95138472	95139472	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	3568.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	4.08282973791393	3.77766062228989	4.1261954212925	3.96239899502135	3.80557543755239	4.01017415569634	-0.230899410093055	0.654867905562256	0.903982359833176
Merged-chr2-127322745-4	chr2	127322258	127323258	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13401.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	3.64412002752889	3.69703482984403	3.95987009655195	3.86371951041729	4.09998159804754	4.24878821507492	0.960026194994755	0.0694195030803951	0.344830637711988
Merged-chr7-27485967-2	chr7	27485467	27486467	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-986.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	4.64988330650874	4.76945318779442	4.74254675522088	4.79809838366903	4.68885559264904	4.60694964766235	-0.0412384500072245	0.918219905908698	0.981747877135909
Merged-chr10-84554645-4	chr10	84554157	84555157	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	4.50975307884202	4.68427310167585	5.04324897956155	4.58327227183189	5.02934244499408	4.6772022158707	0.076889605351394	0.862686377404854	0.968083292979043
Merged-chr3-36552601-4	chr3	36552094	36553094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-12.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	5.24265144700996	5.06151586534364	5.48558693748175	5.32695159573331	5.25093031311928	5.34718348508465	0.0866229561743801	0.808872098344188	0.954721853010197
Merged-chr2-153333214-2	chr2	153332714	153333714	+	623.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008444, exon 9 of 9)	3' UTR (NM_008444, exon 9 of 9)	12596.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	2.28352477673685	2.215457818514	2.46389687411571	2.34243134545472	2.17997584032069	2.41256228719813	-0.0634645787626803	0.940744313617904	1
Merged-chr10-34194700-4	chr10	34194216	34195216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12835.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.75413703201303	6.39196068289569	6.42431390830548	6.67973511113407	6.66942518440769	6.81628224787768	0.285134025439296	0.297929563368304	0.694732032305295
Merged-chr18-65691602-4	chr18	65691100	65692100	+	963.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6668.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.75054953032901	8.0153494966242	7.74198044098258	7.80004112473477	7.91966662922704	7.64281102082591	-0.0687857144881709	0.767141442380477	0.942573703853445
Merged-chr4-103039961-3	chr4	103039466	103040466	+	795.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 16 of 16)	intron (NM_146254, intron 16 of 16)	-13124.0	NM_001290648	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	3.17040024829161	3.27360021150763	3.30532386372262	3.26277593136535	2.91686289351639	3.20785885321938	-0.497057774541227	0.451212506452196	0.808957790071745
Merged-chr5-92097880-2	chr5	92097380	92098380	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14136.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	5.14568612653753	5.46625366125735	5.36105388058799	5.42773524888902	5.32211190656164	5.51140131158636	0.166229614278219	0.632598042808798	0.895571551612667
Merged-chr3-52047781-1	chr3	52047281	52048281	+	662.0	f0_balb.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57225.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.54843321788352	5.48859682196007	5.68252695056576	5.5877250348504	5.55774968295424	5.23747059733234	-0.166960123485346	0.621844586584423	0.890866967864133
Merged-chr6-83660521-3	chr6	83660014	83661014	+	915.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4398.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.78549194041503	6.57501555622977	6.10378716229079	4.65504729230977	3.83994323722861	4.55600890106806	-3.8675715947672	3.28969050373166e-05	0.00111407638353481
Merged-chr5-104958380-4	chr5	104957877	104958877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	24340.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	5.91047507413546	5.99782740623857	5.9493444372137	5.74914540661684	5.49367906610122	6.11751356686681	-0.27882470303714	0.402955222095274	0.778365878954155
Merged-chr8-41298548-4	chr8	41298046	41299046	+	950.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	L1MA5A|LINE|L1	58787.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	3.64156189031862	3.58193291349067	3.71190575498969	4.22337624077591	4.19430042336361	3.83923409667481	1.46494185512585	0.00594643444552743	0.0693368991713989
Merged-chr9-118685228-2	chr9	118684695	118685695	+	664.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	MTD|LTR|ERVL-MaLR	-26497.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.89383195651873	2.94267372143631	3.03699115005713	2.94353263396297	2.82716401952302	3.32587525644785	0.389633653527482	0.582054537562421	0.873508337816738
Merged-chr19-4295572-4	chr19	4295049	4296049	+	965.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	10673.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.62687944640292	6.36912755766374	6.8657313763752	6.74974535494512	6.73668694575168	6.74960244797001	0.188009735294815	0.493909134620978	0.831741743205811
Merged-chr13-20311792-4	chr13	20311289	20312289	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-161201.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.77688287326577	2.8045640045779	2.98084196660145	3.09595440414365	3.10702351019568	2.80389782626135	0.780516868553309	0.274440036252471	0.67173427081911
Merged-chr13-69534826-4	chr13	69534335	69535335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-971.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	8.32017547894292	8.37772427936094	8.03202454067943	7.66475907076817	7.61716808190655	7.27615793415035	-1.02431004443443	2.69195512042166e-05	0.000940748432003552
Merged-chr5-34536060-4	chr5	34535559	34536559	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-7306.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.97707116206097	7.05734561647322	6.98790018366345	6.85929012712157	6.87537406852428	6.86300724628698	-0.219535948938085	0.359828465034154	0.74614615890951
Merged-chr15-80799946-2	chr15	80799446	80800446	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	1336.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	5.83217163959997	5.91355514220774	5.76772864972642	6.49768620699511	6.77637381082691	6.38047474126861	1.21978774146785	3.34013794449662e-05	0.00112703243343745
Merged-chr8-95140988-6	chr8	95140514	95141514	+	987.3110960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	1526.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	5.30027878561875	5.1607382600928	5.93946404259611	5.63277104358943	5.61813561917768	5.79891767532048	0.342792691292342	0.369606104354674	0.754241195123084
Merged-chr16-17013332-2	chr16	17012832	17013832	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	Lx8|LINE|L1	29950.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	4.49538841125677	4.35134426571372	4.15696309207358	3.93934758273009	4.03215050977739	4.2257874892348	-0.790025909219519	0.101429592825781	0.424727168227446
Merged-chr2-167658936-2	chr2	167658436	167659436	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	L2a|LINE|L2	2608.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	5.22314810638177	5.07282409043921	5.2888841347457	5.20701093975372	4.96835775076792	5.02189177819294	-0.259241893599596	0.478465824146051	0.823834402333981
Merged-chr2-32846243-5	chr2	32845758	32846758	+	888.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	CpG	974.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	6.72330906358777	6.80964190729175	6.9464645953741	6.86844714045262	6.96880457212516	6.84921495432276	0.118670814453384	0.633658880522795	0.896059441151508
Merged-chr12-54969246-4	chr12	54968735	54969735	+	884.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	17101.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	3.88496696751017	3.79116546362912	3.96298073806341	4.30110930459395	4.40805733387186	4.03369903340893	1.13657839693802	0.0221828972605565	0.172905308244481
Merged-chr18-62478273-3	chr18	62477805	62478805	+	799.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65547.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	2.43149663544384	2.55604747812765	2.45356635952345	3.16309789920889	2.78487673089419	2.80519806010737	2.59059955311026	0.00265640835148825	0.038374032310874
Merged-chr4-114909012-4	chr4	114908510	114909510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008593)	promoter-TSS (NM_008593)	-112.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	3.77675631089398	3.63080724776533	3.64667075709379	4.16302612889208	3.83707203971095	4.07452169727007	1.0693320222418	0.0449510046744605	0.267373164411503
Merged-chr2-167588910-4	chr2	167588408	167589408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43097.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	8.45299012223001	8.48604075434281	8.20384084239391	8.40847603324987	8.58898962826222	8.27254296715282	0.060428615886176	0.785800429198867	0.94816498272858
Merged-chr1-191281368-4	chr1	191280856	191281856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36762.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	8.05579724619554	7.98253016158513	7.51988746273875	7.09293105016132	7.26296786424589	7.05306661999611	-1.07662283803896	3.19885010144928e-05	0.00108773975987492
Merged-chr1-183804433-4	chr1	183803912	183804912	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55435.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.9836324692891	4.63467189775369	4.35705039722598	5.06604646935532	4.82453347795912	4.47797121745228	0.280990513057967	0.550545272224799	0.860709619458349
Merged-chr12-11267131-2	chr12	11266631	11267631	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 1 of 9)	intron (NM_001361252, intron 1 of 9)	1245.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	4.96242808783387	4.94055673859365	4.7938835289403	4.48221519924332	4.91911612855245	4.6589494243387	-0.439116083323118	0.292217621544529	0.68951252554772
Merged-chr4-129496799-4	chr4	129496317	129497317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5627.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	7.06525967443597	6.7391380992897	7.23507931374505	6.71206388102714	6.77961269093385	7.07079322784294	-0.254314348313667	0.362294008052864	0.747811069211717
Merged-chr2-75773692-4	chr2	75773189	75774189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58488.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.85040656853242	5.65625135038964	5.51562327674087	5.66890260483461	5.856228026439	5.82445717381483	0.175774807381103	0.583053822807958	0.873907285988058
Merged-chr13-55318695-5	chr13	55318210	55319210	+	990.919983	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008739)	TTS (NM_008739)	3270.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	4.91877742296733	4.64859352973769	4.82997905657234	4.60749713535888	4.77658203602391	5.33609791396576	0.290658355899273	0.509864235494205	0.840593094527851
Merged-chr2-151563725-3	chr2	151563215	151564215	+	951.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8908.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	2.78989365221664	2.98708822984981	2.88571353430676	2.6068886632703	2.77464145013882	2.8377696599232	-0.762598476467693	0.30083934586414	0.697626673280848
Merged-chr4-24850936-5	chr4	24850382	24851382	+	904.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033531, exon 1 of 10)	5' UTR (NM_001033531, exon 1 of 10)	242.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	3.86306795703292	4.09185154522308	3.56602889421562	3.30174129764166	3.22162767297716	3.52518914198577	-1.91393496954825	0.00210350937951998	0.0320882565649814
Merged-chr5-66153293-2	chr5	66152793	66153793	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1339.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.77116029474666	3.14965699182959	3.39377932921998	3.37308375274197	3.56084229161316	3.40869872919091	-0.0611891680262255	0.92512858951454	0.983120489108249
Merged-chr3-137945673-4	chr3	137945194	137946194	+	870.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	27139.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	5.60842605816815	5.41258961379801	5.39230409948333	5.10697033874444	5.30244699943048	5.42559633544421	-0.3886706834285	0.263355109552518	0.661383847170923
Merged-chr19-43711762-4	chr19	43711276	43712276	+	950.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053103, exon 6 of 13)	exon (NM_053103, exon 6 of 13)	22087.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	5.97585776881951	6.1779616432214	6.27133965284607	6.47456165281421	6.78144040671977	6.42805209646061	0.721268819590906	0.0126239568160339	0.118379489319461
Merged-chr7-16910142-4	chr7	16909642	16910642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008967, exon 2 of 2)	3' UTR (NM_008967, exon 2 of 2)	3652.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	3.84207630097395	3.72292243835307	3.89096966768813	3.51525596809327	3.55025107433166	3.66033593761454	-0.834786618510245	0.126463104898717	0.475355519288444
Merged-chr14-79428611-2	chr14	79428111	79429111	+	644.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024135, exon 1 of 1)	exon (NM_001024135, exon 1 of 1)	2100.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	3.4189955128608	3.51243697463373	3.92471587743222	3.89901737215721	3.55714903337974	3.75354783291883	0.380404226941574	0.518393054350738	0.845201813272543
Merged-chr5-43232052-3	chr5	43231554	43232554	+	912.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1409.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.07587308349658	6.73844329781354	6.12637173727066	6.41259872164875	6.78196706725025	6.04432055776632	0.161598895730378	0.653374835422023	0.903354103898283
Merged-chr1-51518870-3	chr1	51518384	51519384	+	601.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-40485.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.51060451031634	4.86295096265284	5.17019935964234	4.53127192563773	4.46394292025704	4.77708358643327	-0.642614188860293	0.151141072511245	0.518506648409409
Merged-chr9-94536842-2	chr9	94536342	94537342	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033145, intron 1 of 2)	intron (NM_001033145, intron 1 of 2)	1239.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	4.55530116090013	4.63164509732075	4.7096722231419	4.72884033933806	4.79688443622339	4.88626726825416	0.404430572358542	0.311094847596279	0.706349225824521
Merged-chr4-147528152-2	chr4	147527652	147528652	+	819.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25125.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	2.80523689607302	2.84441729625956	2.61070251466073	2.73700706145938	2.70539795131018	3.05095199778447	0.374126986655119	0.621689223146256	0.8908398051148
Merged-chr17-72838370-4	chr17	72837873	72838873	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	325.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	6.64906042434474	6.82123948364319	6.69214283447119	6.70806447055807	7.12378224768439	6.36473814335352	0.0974767420350016	0.749750812049513	0.93745630986217
Merged-chr13-99205093-3	chr13	99204552	99205552	+	821.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	20229.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.64295815003772	4.38975218873768	4.86742043934513	5.78597135577575	5.54478254443699	4.67888236591386	1.64340795565782	0.000517022501153485	0.0107631744498322
Merged-chr11-115075791-3	chr11	115075389	115076389	+	923.962952	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13850.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	5.19756640361597	5.05827788845192	5.25598125748644	4.235056724909	4.29365298138951	4.5461995942257	-1.93033580322494	4.40635547563802e-06	0.000198615398925725
Merged-chr1-95449411-3	chr1	95448901	95449901	+	884.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135773.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.76738839939391	4.56180751209258	4.75451392830714	4.69010207978287	4.75870949345492	5.21674663261998	0.461162099395145	0.275812329317748	0.673242318833586
Merged-chr1-80452274-4	chr1	80451713	80452713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040460, intron 2 of 2)	L2|LINE|L2	6281.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	5.52245474254414	5.31664328918475	5.53729739828544	5.72519756124682	5.62760567273208	5.8560950241701	0.513817573778289	0.115002242275258	0.452718293761634
Merged-chr18-4314759-4	chr18	4314250	4315250	+	676.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38203.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.65303466911211	7.7758176694686	7.31156697363306	7.6681045698509	7.79137389322185	7.20717449587778	-0.0186145543297812	0.946108668044015	0.98796006280508
Merged-chr18-44381718-2	chr18	44381218	44382218	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	1218.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	5.06029103647048	5.14144577288499	4.9364196716904	5.26261694157288	5.38244730577291	5.18103262868193	0.473036317231349	0.18872974068732	0.574222837446979
Merged-chr7-107595070-4	chr7	107594569	107595569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	18.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	7.42798664517122	7.10481784812012	7.45166242132757	7.41980749545925	7.65413330286288	7.39347032915321	0.245568015464464	0.323525461575904	0.716736510737982
Merged-chr16-91398755-1	chr16	91398255	91399255	+	1000.0	f0_c57.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7480.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.63787774116683	8.50442663260117	8.06903962173252	8.34663140201804	8.78477043393519	8.31697000605148	0.103963498510486	0.693057287328548	0.918823160537068
Merged-chr10-82867081-4	chr10	82866582	82867582	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025499, exon 1 of 1)	exon (NM_025499, exon 1 of 1)	456.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	5.79882114236354	5.46774710098091	5.76005009192588	6.13334249197198	5.86052364601256	5.94451402275657	0.541872784612778	0.089888145899861	0.398455747910907
Merged-chr3-89964518-4	chr3	89964020	89965020	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	2.73974879411206	2.54570502770173	2.69937474474138	2.51563814662529	2.24987863020535	2.38586717708485	-1.78037589417583	0.0403047191509135	1
Merged-chr1-95319092-4	chr1	95318598	95319598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	5470.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.95429851801755	5.23767769773417	5.3864678839697	5.15547200215362	5.11151269661057	5.07167141389289	-0.169279829211692	0.648676533565897	0.901893237722341
Merged-chr5-76139315-4	chr5	76138809	76139809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020611)	promoter-TSS (NM_020611)	-964.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	4.22031828984265	4.36118092950784	4.44182534231747	4.46305202283117	4.54753020362433	4.13882159611397	0.172253154194046	0.709955825377224	0.924166640014037
Merged-chr11-50198923-2	chr11	50198423	50199423	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026543, intron 6 of 6)	intron (NM_026543, intron 6 of 6)	11897.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	2.92700867111795	2.69971539142473	2.98290813153174	2.69062347469791	2.7067575344007	2.75728181863622	-0.804335062057111	0.274322731221064	0.671721462492876
Merged-chr19-42072359-3	chr19	42071857	42072857	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	14013.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	4.50302956012052	4.08285829512658	3.91899969249945	3.326488397433	3.07619687384803	3.42423658206439	-3.71580342055825	2.7910743085793e-07	1.75673003833787e-05
Merged-chr11-23306460-4	chr11	23305983	23306983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190401)	promoter-TSS (NM_001190401)	-412.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	8.30923322166313	8.2829478592398	7.73353881975355	8.12980273832036	7.83033420545225	7.91059169025134	-0.254337652141847	0.323986007079426	0.717260281417184
Merged-chr6-128760883-4	chr6	128760381	128761381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27760.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	7.48185076892099	7.58456136358144	7.20618381411851	7.08759995599187	7.51253384048771	6.92106193478889	-0.337153154232524	0.229336372554011	0.624799321834659
Merged-chr19-10303253-5	chr19	10302718	10303718	+	832.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	1659.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.09796497752762	2.90547860848787	3.15332681137971	2.79887173926477	2.58434086661826	2.68223674520879	-1.9509833280642	0.0114689878417236	0.110773249023116
Merged-chr14-58072142-4	chr14	58071581	58072581	+	990.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013518)	promoter-TSS (NM_013518)	-605.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	2.94667334529708	2.80612695443607	3.06685287102188	2.9084406254863	2.66537218484502	2.96648390486802	-0.45473297028311	0.529513966551895	0.850920221109912
Merged-chr3-100535346-2	chr3	100534846	100535846	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46154.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	3.26310284012255	3.40769194960441	3.33275935206596	4.10103124671388	3.78459116888746	3.75259156604394	1.97971401948384	0.000922239078526453	0.0169025703185086
Merged-chr2-72260879-4	chr2	72260332	72261332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24805.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	6.87331484770983	6.62126936866872	6.88241194399052	7.06960555803109	7.26051463543701	7.21157106663549	0.597137621740474	0.0172579430455817	0.146436090738643
Merged-chr8-34904285-4	chr8	34903800	34904800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 3 of 26)	MER90a|LTR|ERV1	61390.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.86314691054291	3.82730314745571	3.79673217122417	3.51627383613464	3.57317927070463	3.60417320506169	-0.911280361218741	0.0934187318601202	0.407122287781746
Merged-chr8-94551832-4	chr8	94551339	94552339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 4 of 15)	intron (NM_153507, intron 4 of 15)	18811.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	4.42078239828877	4.29349905217724	4.43859389381192	4.77922307467523	4.92996746501867	4.46226139409163	0.897139759665996	0.0398865174198104	0.248530976667493
Merged-chr2-26931740-2	chr2	26931240	26932240	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	1771.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	5.07745810909942	4.79505348147041	4.80362911002771	4.86628671333915	4.64343795232468	5.04807850690422	-0.115660981121935	0.776303145928664	0.94480820353868
Merged-chr5-139789712-3	chr5	139789188	139790188	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	2.54464133637886	2.47094791475183	2.62740062276254	2.54876559769658	2.26913781091381	2.57710182495559	-0.475519880382361	0.563792034517099	1
Merged-chr11-80429247-1	chr11	80428747	80429747	+	702.0	f0_c57.idr	intron (NM_178616, intron 1 of 13)	CpG	632.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	7.64333102576916	8.14503129617848	7.77472024911669	7.43431558239413	7.44984736319667	7.62820982370146	-0.539803799683862	0.0316000426438117	0.215399061874849
Merged-chr17-27851331-4	chr17	27850817	27851817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5190.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	7.82947293452625	7.74256005935284	7.05450000640011	7.74556949233728	7.95254752822311	7.37366137566347	0.177867873434098	0.560973915033444	0.865355332315314
Merged-chr7-67551437-4	chr7	67550934	67551934	+	920.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	93802.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	2.80703358032757	2.63867779826677	2.99200846916094	2.4918721877516	2.61544134133709	2.51902562150413	-1.51015889911509	0.0616593093040086	0.32212895137615
Merged-chr11-76782038-2	chr11	76781538	76782538	+	870.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-18460.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	5.18328114893349	5.14390239535184	5.46211147740544	5.06271800252708	5.14207709263305	5.1654030900254	-0.28000632436629	0.438341492006388	0.800490069452335
Merged-chr18-79978287-2	chr18	79977753	79978753	+	946.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-68642.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.62585836794566	4.74990701045968	4.31718159096716	3.64340860921405	3.58395816175941	3.71020634478432	-2.95519350365309	1.01354129624561e-07	7.23129232366322e-06
Merged-chr9-7346850-2	chr9	7346350	7347350	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-524.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.00833610734418	6.033314160288	6.08987091591583	5.25472797474974	5.17910010928555	5.26017815560633	-1.52298476741799	1.82647920400228e-06	9.16632579050795e-05
Merged-chr15-79932746-4	chr15	79932262	79933262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144811)	promoter-TSS (NM_144811)	-116.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	5.61222712223188	5.7186455305468	5.66372980002377	5.61727001788379	5.42481786902263	5.44102955126312	-0.317772228159063	0.323913292006052	0.7171565430589
Merged-chr16-10434295-4	chr16	10433816	10434816	+	967.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13046.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	5.40569181739387	5.71121344118253	5.96609127923702	5.95610729561048	5.96137603852326	5.86457114628575	0.408625785008569	0.214242814741397	0.607441279998006
Merged-chr14-64934044-1	chr14	64933544	64934544	+	561.5	f0_balb.idr	intron (NM_177338, intron 1 of 9)	B3|SINE|B2	15813.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	3.37266999759991	3.49856057003275	3.57700068607629	3.47252286649648	3.25086210850854	3.64649925033872	-0.0907431814150861	0.880008671798802	0.972364498183256
Merged-chr14-14633326-4	chr14	14632836	14633836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69689.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	5.75406258507146	6.07187891800589	5.88261811894863	5.76397918544627	5.71552939932811	5.7692541674564	-0.295138772278378	0.341137825788294	0.730686899066382
Merged-chr17-5574855-4	chr17	5574337	5575337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1H1|LTR|ERVL-MaLR	82237.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.89225776977173	7.68236721059544	7.61435037696641	7.88205609364582	8.09567686184507	7.68993490680191	0.24157463095845	0.313855756480174	0.708250204355552
Merged-chr19-12730629-4	chr19	12730130	12731130	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34840.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	5.29201627866406	5.20735455063093	5.45073371095876	5.05411489018414	5.22272629764061	5.3996379916942	-0.173669257156628	0.627022550499803	0.892988961867358
Merged-chr11-116138930-4	chr11	116138426	116139426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-58.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	6.27232012387862	6.33573465585114	6.02714249126613	5.9877934751388	6.11837747436902	5.78408026958597	-0.415927374424815	0.17009061131573	0.547373901081345
Merged-chr15-58749306-4	chr15	58748822	58749822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74105.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.03060155093075	4.79859800757075	4.36530654717371	4.90612115564506	4.68903645998069	4.62296930034758	-0.0582307754732266	0.896852390954101	0.97587199430405
Merged-chr4-156228017-4	chr4	156227511	156228511	+	973.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008233, intron 2 of 15)	intron (NM_001008233, intron 2 of 15)	531.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	4.74480902519847	4.25781506509648	4.49091740528651	4.58746955527862	4.6770084609213	4.64111792625489	0.293120521768143	0.507633868960282	0.83931166729816
Merged-chr6-125574008-2	chr6	125573508	125574508	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	21060.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	4.97108828593061	4.98007357676397	4.82761708022788	5.13704927000274	5.56621724951344	5.22255554348272	0.826601880022928	0.0293912629444276	0.206124945957961
Merged-chr10-125745043-5	chr10	125744535	125745535	+	860.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221184.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.86812480292114	5.23193411508552	5.0093799148859	4.73241366081975	4.75399025369888	4.89561477080332	-0.569924996016763	0.14679269362897	0.511188015881782
Merged-chr12-84010740-2	chr12	84010240	84011240	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012006, intron 1 of 2)	intron (NM_012006, intron 1 of 2)	1238.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	4.20034188180139	4.66738323490871	4.18576013288909	3.78730892764833	3.49678594476681	3.91017844865409	-1.97023425819655	0.000387147479204196	0.00857205094455103
Merged-chr15-102516719-2	chr15	102516219	102517219	+	972.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163643, intron 1 of 15)	CpG	285.0	NM_001163643	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	4.04471154535384	4.00627683012863	4.3703115714677	3.65754262914574	3.86963570470306	3.85950650318204	-1.03643959216692	0.0495690073911988	0.283123144357967
Merged-chr12-111444288-4	chr12	111443770	111444770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1609.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.04065151445279	7.89288691773195	7.67931793787575	7.98471548168746	8.13527431756425	7.4588772373918	0.0247744623541882	0.927079043587459	0.983578869536024
Merged-chr10-40165168-2	chr10	40164668	40165668	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22914.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	2.57059846625378	2.8343220718388	2.96584465481046	2.62455703644998	2.58925704744528	2.68809361585083	-0.903448906042676	0.242133789071323	0.639198996812551
Merged-chr19-4292670-2	chr19	4292170	4293170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 3 of 20)	intron (NM_001290818, intron 3 of 20)	-9533.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	3.84748183245245	3.72482549421517	4.27852465923225	4.09091547344243	3.99826585095599	4.38468460958475	0.578851563435266	0.279349730680567	0.677020137781978
Merged-chr4-120914041-4	chr4	120913538	120914538	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	10967.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	4.52157985221041	4.61173618686162	4.68752515252632	4.38034866276509	4.731952112317	4.78998436436004	0.0974442766826421	0.819838017216326	0.957345733856242
Merged-chr18-67391343-4	chr18	67390828	67391828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026473, exon 2 of 4)	exon (NM_026473, exon 2 of 4)	597.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	8.11549651499769	8.24451918446024	7.72885980797074	7.67625345459383	7.6510988667011	7.53422373848117	-0.617340249041047	0.0111990204125185	0.108907955173408
Merged-chr2-70877906-4	chr2	70877416	70878416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52436.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	6.16003124167154	6.20636894303196	5.89109842370166	6.32073083114899	6.57158595233358	5.81835255211992	0.316819416416115	0.34622104510093	0.734515828466387
Merged-chr13-102690822-2	chr13	102690322	102691322	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2725.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	7.39778889264568	7.46097306875661	7.26883603369258	7.73993974681618	7.78819095287865	7.19023602084582	0.336411501064117	0.205566202154046	0.596131993192832
Merged-chr5-149248390-2	chr5	149247890	149248890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16614.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.99338506033173	5.02227528637321	5.23092385972344	4.85043399575718	4.96872425641674	5.10560479639841	-0.22461916916206	0.550048177141745	0.860567251872938
Merged-chr17-35094933-3	chr17	35094432	35095432	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178592, intron 5 of 19)	MIR|SINE|MIR	5641.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	3.10600613881018	3.55823580722191	3.35077543195445	3.19430963855521	3.26722670753765	3.42108080090281	-0.241470011538266	0.708357368319149	0.923684652799343
Merged-chr11-82870263-4	chr11	82869762	82870762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	482.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	7.84300512172445	7.92927612866869	7.51530393603513	7.90583077184557	7.97399081181633	7.69988538614839	0.125344498375985	0.602301836048978	0.882299035371658
Merged-chr5-45917041-4	chr5	45916547	45917547	+	919.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	15362.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.90978338851921	4.07133544679935	4.31149107854732	3.83454943861138	4.16755278910345	4.33667552316945	0.0711349363805069	0.890685698137694	0.974547949258886
Merged-chr5-123893727-4	chr5	123893232	123894232	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-13543.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.13376825009649	4.11721025543163	3.76456377536095	3.85927966445484	3.8026745828987	3.47962740574183	-0.907952148969562	0.112328425058709	0.447656669011208
Merged-chr1-144313565-4	chr1	144313071	144314071	+	932.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64467.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.70785371528662	6.59612270630567	6.69561267541882	6.85303314397058	6.9623701704564	7.09029251468973	0.470456885607353	0.0609352331575185	0.319826046113062
Merged-chr15-101258087-2	chr15	101257587	101258587	+	649.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8759.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.24211740591214	5.2829077345146	5.30159013101558	5.63584988943403	5.46841901364019	5.33362750773943	0.421778464159379	0.214319612879457	0.607446165658035
Merged-chr11-34071457-4	chr11	34070944	34071944	+	889.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	24516.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.38647647642581	5.4030043737351	5.73982259614587	5.50568452226126	5.46371859651594	5.70235902049472	0.0867487309697439	0.798588908754181	0.952024179691701
Merged-chr15-101975623-4	chr15	101975059	101976059	+	896.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21272.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	7.10507667927739	6.98956999834294	7.76696467507236	7.42992460891036	7.41485786400948	7.46245550275162	0.158947521513262	0.587440711146572	0.875918692084509
Merged-chr2-112493258-4	chr2	112492744	112493744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028844, intron 1 of 5)	CpG	280.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	7.2118250428595	6.79900320889085	6.40254477845058	7.12847514117126	6.52740757122108	6.81608380479314	-0.0154481812456955	0.962897528244258	0.991016963580472
Merged-chr14-26466128-4	chr14	26465628	26466628	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 5 of 22)	intron (NM_001310445, intron 5 of 22)	68496.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	4.03904260518153	4.87320279829343	4.54746183265995	4.57789233146454	4.32507948790406	4.40083755150663	-0.245847600236203	0.628587005406027	0.893783616313365
Merged-chr10-80172210-2	chr10	80171710	80172710	+	960.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027207)	promoter-TSS (NM_027207)	-734.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	5.3009832192675	5.20547098838017	5.35252358106183	5.56790734493001	5.51239392695901	5.90671875597938	0.727292497723501	0.0343270487841873	0.226836342777091
Merged-chr7-39544388-4	chr7	39543907	39544907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26641.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	5.97348267232287	6.38654097335312	6.41357129987453	6.37114872687779	6.10574521971253	6.47285971912991	0.0800260534645132	0.794785566814674	0.950867819055357
Merged-chr5-123018966-3	chr5	123018441	123019441	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	3867.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.53859987090581	4.54860384009267	4.70775599871625	4.39114951992682	4.37009270942734	4.31904358772425	-0.586110410038405	0.17324911689281	0.551957215225209
Merged-chr10-51481063-3	chr10	51480591	51481591	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291893, intron 2 of 7)	intron (NM_001291893, intron 2 of 7)	479.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	8.38090228578397	8.64546259903613	8.26549134744488	7.99259609450076	8.5158743779064	7.94201652527549	-0.359303038389071	0.172003921106891	0.550528994401747
Merged-chr13-97187233-2	chr13	97186733	97187733	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 5 of 13)	L1MC4|LINE|L1	11124.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	6.43162429008171	6.44773911890672	6.28511911380216	6.33765807383026	6.48983268121509	6.30465101603873	-0.0148184835296488	0.956579636488807	0.989887454023164
Merged-chr4-126204868-4	chr4	126204361	126205361	+	958.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2151.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	7.09855756276096	7.10114574397413	7.06060767173578	7.26819754847759	7.61257693000652	7.10531301481478	0.403766670404755	0.117926003271154	0.458608472620406
Merged-chr10-53629497-4	chr10	53629022	53630022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 2 of 13)	CpG	917.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	7.14180375865938	7.07534420077915	6.60599448804709	7.38307208479655	7.19064537773358	6.78750973655452	0.270060316952954	0.364263855345655	0.749666877743191
Merged-chr14-66805627-2	chr14	66805140	66806140	+	758.0	f0_balb.idr|f0_c57.idr	intron (NM_009955, intron 13 of 13)	intron (NM_009955, intron 13 of 13)	62960.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	3.37598031427591	3.3816636681003	3.93173718577254	3.32874989128999	3.66875708228956	3.72364710426816	0.0048631129430327	0.993862051591789	0.998819658057245
Merged-chr4-9675067-1	chr4	9674567	9675567	+	565.0	f1_balb.idr	Intergenic	Intergenic	-5723.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.75545209890806	3.77992411736787	3.76013217551248	3.84059159773243	3.58316528976543	3.97584699227619	0.112604922900589	0.835133956489484	0.961504126792907
Merged-chr8-120743752-4	chr8	120743245	120744245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008320, exon 3 of 9)	exon (NM_008320, exon 3 of 9)	5106.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.62847268599179	7.19683750564011	7.43606239850182	7.57710227364436	7.53448026479506	7.34076835827605	0.0869447099396484	0.727673482989059	0.930204882969987
Merged-chr19-4929020-2	chr19	4928520	4929520	+	572.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-733.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	4.25318334677879	4.32297962021121	4.5057119724958	4.54980901496943	4.67854269486889	4.44546821527098	0.536939126215995	0.218973889026332	0.613128894826908
Merged-chr9-56108353-4	chr9	56107842	56108842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	18366.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	6.14211010322597	5.8589085817671	6.21849049113553	6.13960599265926	6.06374194873974	5.87610470948658	-0.065090451295253	0.830904741599069	0.960370002015736
Merged-chr14-21757756-4	chr14	21757264	21758264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359953, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	6212.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	6.81493694255603	6.49230587450688	6.39622643579476	7.25493932469935	7.16898118083476	6.97410648776051	0.852168906166967	0.00173836545631068	0.027738248780676
Merged-chr11-80174340-6	chr11	80173818	80174818	+	758.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-9554.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.09074440134055	5.9157523243331	6.19431400365377	6.32107873335268	6.40935376556104	6.39041010286995	0.521309025433826	0.0641268960008094	0.329904214321463
Merged-chr3-146451507-3	chr3	146451027	146452027	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028836, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	1060.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	4.49890641978027	4.53497390633573	4.21496990688951	4.37308354848436	4.36105353451953	4.13523420977607	-0.344895298356896	0.456029886316033	0.811290789059103
Merged-chr10-87855432-2	chr10	87854932	87855932	+	615.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2833.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.23466337286527	4.2436330080925	4.0072202278048	3.826624107068	3.43190541183595	3.76699651759442	-1.57019297968717	0.00442566379983213	0.056178586339654
Merged-chr15-101275850-3	chr15	101275348	101276348	+	866.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8453.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	3.03980084897727	3.20437066489311	3.52363115533845	3.33813695346921	3.58927714437052	3.69252903162097	1.08254159614172	0.0946893257816097	0.410179605336602
Merged-chr7-126797740-6	chr7	126797213	126798213	+	936.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177308, exon 2 of 9)	exon (NM_001177308, exon 2 of 9)	1465.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	5.49771844627893	5.29668804502023	5.27075461624548	5.37401690436248	5.1946517470393	5.64890514366019	0.0837593109931401	0.81533540541313	0.956370078970016
Merged-chr1-163383786-1	chr1	163383286	163384286	+	862.6666869999999	f0_balb.idr	Intergenic	Intergenic	19883.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	2.75884924121988	2.61703846577593	2.79384813213664	2.72203899738768	2.71734206556112	3.03972922137268	0.545447641184582	0.461927631860639	0.815107818354545
Merged-chr6-138141430-4	chr6	138140914	138141914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361309)	promoter-TSS (NM_001361309)	-173.0	NM_001347489	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	6.28115586297923	6.88195088519117	6.39029859609197	5.89962935028585	5.5873399454435	5.83665320327932	-1.31743992632377	5.78499167316108e-05	0.00177819574119094
Merged-chr13-95503599-3	chr13	95503084	95504084	+	808.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	21656.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	2.44424789607037	2.5910049318393	2.64882338799308	3.12060420609844	3.01703169061836	3.26530120905108	3.41823044372991	0.00013893162978608	0.00373633582780871
Merged-chr9-104063717-4	chr9	104063201	104064201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	-2.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	6.40140826233696	6.4864587654661	6.80366791437826	6.58969750230608	6.54871944448918	6.10034348446842	-0.20134041679616	0.505858677191988	0.838177729332582
Merged-chr9-105186895-4	chr9	105186374	105187374	+	836.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-41792.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	3.7136510665092	3.39858076173417	3.60659212588703	3.37770693105461	3.27673423277803	3.67622338521423	-0.486511336234239	0.422645228766205	0.791448507539156
Merged-chr17-5238066-3	chr17	5237589	5238589	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	180678.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	6.16731559649867	6.43683479081345	6.15890874473733	6.05792412065417	5.85425760315926	5.61180993797316	-0.69218161528268	0.0272876098026911	0.196814431090816
Merged-chr1-136117171-3	chr1	136116670	136117670	+	998.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14013.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	3.27556726261189	3.55433173449324	3.60329748209046	4.19787919025755	4.39090067348263	4.31812727970355	2.74205954152296	2.4693009084622e-06	0.000120366485056428
Merged-chr11-46039547-4	chr11	46039058	46040058	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14944.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.97362295343343	3.99698008559878	4.37807652588097	4.93218307625098	4.90307660270783	5.04689102982039	2.15094783393168	2.02857638432756e-06	0.000100892877338391
Merged-chr2-75720802-4	chr2	75720300	75721300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-16137.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.84451228989499	8.00766384380274	7.43381261956866	7.97095958789882	8.38304663700601	7.71689032738645	0.384525962019782	0.177905207746107	0.55892688546374
Merged-chr8-85072139-4	chr8	85071672	85072672	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039514, intron 1 of 8)	intron (NM_001039514, intron 1 of 8)	415.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	7.92336308349114	8.25046661961645	8.0018889794517	7.65147826479805	7.90072542504055	7.51821889753314	-0.514413619892639	0.0339348989484871	0.225387537652116
Merged-chr1-191875909-4	chr1	191875473	191876473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30808.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	7.22120223040838	7.24488616458612	7.26963068308977	7.25026172954253	7.23275464505581	7.08181191731629	-0.0734096357044162	0.7517527003526	0.937978356481604
Merged-chr12-3782309-2	chr12	3781809	3782809	+	619.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-24671.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.88618367118136	3.16446744131336	3.08203117789191	2.84076309650628	2.87578048387395	3.0383379628022	-0.624313303735505	0.368848482899984	0.75365627692316
Merged-chr15-57919947-2	chr15	57919447	57920447	+	641.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167679, exon 3 of 18)	exon (NM_001167679, exon 3 of 18)	7748.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	4.2005794940632	4.33062193312587	4.47822007809772	4.70544694103318	4.78880784236811	4.7816352627941	1.05384371033428	0.0130276741691354	0.12107748377811
Merged-chr12-33158426-4	chr12	33157896	33158896	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	10710.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.61037004475116	3.28138846415373	3.84655068782893	4.28754769846361	3.76010652631027	4.19365360066823	1.60459816464699	0.00820401192038861	0.087596487087347
Merged-chr4-95193208-4	chr4	95192709	95193709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140987.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.85815873753317	5.90113871803404	5.72940268762208	6.07874042125764	5.68603151108981	5.65342508251791	-0.0234642887269159	0.942182046477408	0.987107738800722
Merged-chr7-27238790-4	chr7	27238301	27239301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133770, intron 5 of 14)	intron (NM_133770, intron 5 of 14)	5788.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	6.70217520863792	6.74262015992545	7.07068299151186	6.94447958948646	6.94815703894865	6.73788070409888	0.0720979056073809	0.785285000321703	0.947853081776201
Merged-chr7-97579006-2	chr7	97578506	97579506	+	720.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081267)	promoter-TSS (NM_001081267)	491.0	NM_001177945	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	4.87982483180854	5.18728905371556	5.04057077167734	5.38868813331736	5.22811614961056	5.17501627594208	0.46299986236926	0.207571239064292	0.598357445351173
Merged-chr14-49063066-4	chr14	49062568	49063568	+	894.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-3481.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	3.63282438053191	3.58470865015921	3.69378894357851	3.45161228467117	3.21678472256363	3.38932844653847	-1.07409209132488	0.069340907750486	0.344625388370711
Merged-chr17-13850362-4	chr17	13849856	13850856	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 17 of 33)	B3A|SINE|B2	-88962.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	3.05853821085243	3.33457558771554	3.20975465998484	3.27757327910908	3.0953739807985	3.28157121481152	0.0391451392391494	0.951434156927366	0.988807980335639
Merged-chr8-70839056-1	chr8	70838556	70839556	+	1000.0	f1_c57bl6.idr	intron (NM_027560, intron 1 of 7)	CpG	664.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	7.47923792589511	7.47768828521295	7.42992435318424	7.28360310223867	7.25696401483253	7.49707430956567	-0.177093241359323	0.441311859102805	0.802550042011281
Merged-chr1-138162893-4	chr1	138162378	138163378	+	881.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	12248.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.36981595725729	4.39944210426165	4.35655417035683	4.50400062210724	4.30801416457134	4.62987550177612	0.257186293028038	0.560048854105381	0.865168019835518
Merged-chr3-69670414-4	chr3	69669869	69670869	+	758.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-51686.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	7.30372019126396	7.78504732641576	7.19313220159819	7.53106260746633	7.72950679630295	7.50141462060892	0.191545233090781	0.477788550374696	0.823367525497911
Merged-chr8-124704622-3	chr8	124704125	124705125	+	828.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357357, intron 4 of 19)	intron (NM_001357357, intron 4 of 19)	17369.0	NM_001357357	234875.0	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	3.74498811836504	3.61150155485779	3.74998967798722	4.94200402888009	5.20029757120544	4.5156982830817	3.53835282706013	1.83642518171753e-10	2.31172869168461e-08
Merged-chr8-46815108-2	chr8	46814608	46815608	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	75363.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.94625881682131	4.02215759404594	4.25446885794299	3.73424228320959	3.56340953392611	4.23881345640876	-0.626370897446932	0.269762997416573	0.66686579973798
Merged-chr9-66305399-4	chr9	66304902	66305902	+	801.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45048.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.69849430933402	6.0699135122615	5.66869386744863	5.68545756610316	5.91635957124864	5.78487553832834	-0.0565008862635212	0.862731074636444	0.96809238390547
Merged-chr13-45889553-2	chr13	45889053	45890053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	75438.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.3902130846041	5.37371556064559	4.88380094627017	4.85451104620121	4.4120014431215	4.74912379952386	-1.24500224863696	0.00321836446313262	0.0444766102388871
Merged-chr5-21385782-1	chr5	21385282	21386282	+	563.0	f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	ID_B1|SINE|B4	13109.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	5.59008279016536	5.50778977900653	5.37367495142722	5.78986771140536	5.94122224962008	5.62041533358652	0.55381762892497	0.0891904096133694	0.396745242099106
Merged-chr4-86856908-1	chr4	86856408	86857408	+	1000.0	f1_balb.idr	intron (NM_009096, intron 1 of 4)	CpG	459.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	7.9289858383121	8.21184696704355	7.71037270310261	7.77768104912319	7.64758628753333	7.6558257130654	-0.40011933810935	0.0980403205759006	0.41740626243114
Merged-chr14-63382021-4	chr14	63381525	63382525	+	928.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 6 of 12)	intron (NM_007549, intron 6 of 12)	35162.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	3.28397802712653	2.98836863901328	3.19506043652523	2.89810885200114	2.98083291015138	2.97350995997484	-0.953861560003611	0.162806850564306	0.536188662408322
Merged-chr5-64811320-3	chr5	64810784	64811784	+	944.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7761.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.99118368049893	6.97979142777614	7.19246501753516	7.04320450958328	7.16992332979849	7.19113752271074	0.127560781929872	0.597251923184187	0.880302510795789
Merged-chr10-30654389-3	chr10	30653863	30654863	+	932.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358841, exon 12 of 16)	exon (NM_001358841, exon 12 of 16)	1504.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.30552237620916	4.46642012326975	4.58277678209937	4.24468126167279	4.49786218591975	4.9934113118681	0.378561561191325	0.429931713386107	0.795961640506017
Merged-chr6-116654338-4	chr6	116653855	116654855	+	859.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 3 of 10)	intron (NM_178045, intron 3 of 10)	3671.0	NM_001166580	213393.0	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Depp1|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	2.41671576994491	2.34876667840188	2.60174344073953	2.27178378476324	2.67381067881237	2.55166983373495	0.326585206045779	0.702060675565433	1
Merged-chr6-15760480-2	chr6	15759980	15760980	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	39819.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	2.84185110428026	2.849456634549	2.68696731360906	2.87487654811028	2.65800441510936	2.88673746752577	0.0406239579004352	0.955812186127971	0.989783387008628
Merged-chr13-94156040-3	chr13	94155496	94156496	+	761.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	98200.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.43187169001693	3.36555902563726	3.18669810017682	3.10197120332726	3.17663255741374	3.25916946435514	-0.655602820998519	0.299703095858867	0.696389142703842
Merged-chr7-44929742-4	chr7	44929222	44930222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-232.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	7.17361912751345	6.90214840090542	6.8921211626405	7.27666370755119	7.0147789443694	6.81333664039732	0.0828398060346546	0.757829269794885	0.939957028913442
Merged-chr7-102016372-7	chr7	102015916	102016916	+	847.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010531, intron 4 of 6)	intron (NM_010531, intron 4 of 6)	1739.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	7.02620937419629	6.67219050731018	7.08843285457211	7.0675198339689	7.16130159345915	7.00348282662024	0.224691650237929	0.388810392461764	0.768720598277151
Merged-chr1-133025351-4	chr1	133024838	133025838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	78.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	7.92578278158961	8.37112074782167	7.94805939466623	7.94797920247581	8.09192669952168	7.89315687852868	-0.170312813879782	0.481780238422115	0.825208669475694
Merged-chr4-105697341-1	chr4	105696841	105697841	+	551.0	f1_balb.idr	Intergenic	Intergenic	539994.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.29677734205517	3.27816291381434	3.18115483747437	3.03054525094394	2.88687944655992	2.94947845296397	-1.38334729031054	0.0400464740338201	0.249135477488307
Merged-chr5-117884969-2	chr5	117884469	117885469	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	18130.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	5.56101816797618	5.24389410821056	5.82004906232874	5.51022282002832	5.31100369175848	5.34799351653104	-0.306513936372308	0.396523643700264	0.773652887901204
Merged-chr18-9806713-3	chr18	9806216	9807216	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	URR1B|DNA|hAT-Charlie	99068.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.05761267075791	4.18147497029731	4.25092105125836	3.2678249367961	3.3292457581488	3.60261123855499	-2.77464003646235	6.51717647365095e-06	0.000278059190377465
Merged-chr7-43392558-4	chr7	43392076	43393076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-15704.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	3.37914268677037	3.43987772577194	3.26958152456713	3.31019101319085	3.40221688908721	3.34161879341818	-0.0595198216391882	0.921144210187214	0.982526400261012
Merged-chr8-119435690-2	chr8	119435190	119436190	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1472.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	3.88447025467669	3.70951345327721	4.11561585446686	4.11086191979987	3.60508928774379	4.22579097203937	0.279917286425832	0.620987870470159	0.890443966155973
Merged-chr8-110594330-4	chr8	110593833	110594833	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 79 of 86)	intron (NM_172916, intron 79 of 86)	-24234.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	3.01970286851788	3.05282642078692	2.87720396537916	3.318201754693	2.82960231095388	3.07773564344933	0.453652707405492	0.52499003421527	0.84884700169621
Merged-chr15-79670385-2	chr15	79669885	79670885	+	902.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-483.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	3.50459656646334	3.67319862204326	3.34570551416219	3.69478095672921	3.4408876858223	3.53509455838427	0.134556643494516	0.820086594513826	0.957454263453157
Merged-chr9-107287522-2	chr9	107287034	107288034	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	1862.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	2.70107879636171	2.56196918789597	2.63849959812233	2.94921883130851	2.76949396775909	2.84017262325662	1.17281042567809	0.115523796824719	0.453762466304344
Merged-chr2-5741078-4	chr2	5740569	5741569	+	959.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26307.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.86470515856062	4.54082121517763	4.86145883727476	4.68633907607769	4.96991639619437	4.77692322757551	0.146232143931971	0.723127457521085	0.928989158354973
Merged-chr12-36187303-4	chr12	36186806	36187806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 6 of 9)	intron (NM_146033, intron 6 of 9)	30182.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	5.75161316957293	6.08466109319977	5.71012133023866	5.27245662760347	5.26535963634639	5.33486789128054	-1.09154454510561	0.0011468803396217	0.0200230002726065
Merged-chr11-50106186-2	chr11	50105686	50106686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-25174.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	3.45631519393517	3.70971334000792	4.0695046737242	3.42535733727953	3.35864035157745	3.82931395351267	-0.732001829181145	0.240276724439114	0.637355287657274
Merged-chr4-119239434-5	chr4	119238951	119239951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5622.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	4.66695424013553	4.76063631492714	4.89335650764554	4.78808641908928	4.56254738426904	4.99163745221264	0.0197596187232952	0.961822238300684	0.990684873115088
Merged-chr3-35932866-4	chr3	35932442	35933442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	24.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	7.00690121045942	6.65485631387445	6.54253149204505	6.96502469707957	6.31846271520495	6.6368640460959	-0.142445718752119	0.648701717780672	0.901893237722341
Merged-chr4-117041617-4	chr4	117041125	117042125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22223.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	6.34001898437265	6.4166951462877	6.55681169673311	6.51171954208318	6.89772106243877	6.83355422449609	0.518808512899759	0.0593826498565853	0.315577195652389
Merged-chr5-130853531-4	chr5	130853051	130854051	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	404759.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	5.11406908180307	5.18674202740313	5.2837063274817	5.00474436068107	5.26990382834567	5.18894947832646	-0.0583274158202457	0.871380271669051	0.970222087171093
Merged-chr6-99486064-3	chr6	99485616	99486616	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	34877.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.29083612977996	4.03581517412601	3.92978004275329	3.93038857018937	3.95799141905596	3.94870345774071	-0.458935129237728	0.361642017542398	0.747458707295016
Merged-chr1-46905073-1	chr1	46904573	46905573	+	568.0	f0_balb.idr	intron (NM_001356417, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	20703.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	3.50811363297572	3.25468864002427	3.28477750655623	2.87968608944649	2.9252551739541	3.12576386394739	-1.72844872193938	0.012067137087711	0.114712937597881
Merged-chr2-167230747-4	chr2	167230237	167231237	+	868.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 1 of 9)	intron (NM_008968, intron 1 of 9)	9800.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.7447454084541	4.80310703696735	4.58703221689221	4.7283458255023	4.66574242982972	4.77495192659448	-0.00623961378728332	0.987613363384706	0.997223245230291
Merged-chr7-107684687-2	chr7	107684187	107685187	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-7156.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	2.88722935393289	2.91334078145732	2.91602764315456	2.52569931203936	2.69732895956709	2.74645677362662	-1.32051063042496	0.0819773798188141	0.378718446338826
Merged-chr9-77709177-4	chr9	77708693	77709693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45342.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.78515551574631	5.00190230748095	4.69725560319589	4.58115207578467	4.70951785670002	4.41334369602567	-0.59797047624393	0.157065050686945	0.528021847099484
Merged-chr13-64426409-2	chr13	64425927	64426927	+	713.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6126.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	2.74222745889533	2.80426900329879	2.95607540521251	2.91029219727057	2.65771609144796	3.29990814683333	0.676010652403248	0.373348093957628	0.757262615756539
Merged-chr2-102882345-4	chr2	102881856	102882856	+	768.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	19309.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.31903170963063	5.20855292781604	5.51185684408381	5.33696789096191	5.481609452804	5.4616007636961	0.170184142727809	0.618937224203328	0.889524760662882
Merged-chr1-74716600-2	chr1	74716100	74717100	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024264, intron 1 of 8)	ORR1F-int|LTR|ERVL-MaLR	3065.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	4.66707789660873	4.91230744895622	4.98349830194465	4.61723211390538	4.65817936422333	5.04714394925072	-0.179762542248475	0.666474222466219	0.90820633633529
Merged-chr5-123014950-4	chr5	123014457	123015457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175423)	promoter-TSS (NM_175423)	-117.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	7.07953862076798	7.05139457499232	6.83343562722648	7.11550596007082	6.99680247342434	7.24700659480519	0.178238639135785	0.474055781600901	0.821247104271739
Merged-chr14-20378555-3	chr14	20378060	20379060	+	725.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 11 of 13)	intron (NM_001024512, intron 11 of 13)	10350.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	2.27031889779196	2.02082810330433	2.17992795441442	2.30292414026456	2.12826815831755	2.38650833315472	0.784393661440397	0.386154033466504	1
Merged-chr13-89488385-4	chr13	89487890	89488890	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52246.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.30896998832425	3.44296151057219	3.5794594612806	3.81984178194264	3.76813260217826	3.75476896100772	1.20474401812667	0.0330212259533715	0.221547420549204
Merged-chr5-86935850-2	chr5	86935350	86936350	+	842.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9347.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	3.27415310104328	3.24567986859239	3.32983118694323	3.3758725114577	3.22563087777234	3.2881202528322	0.0601537614049899	0.921282327830246	0.982526400261012
Merged-chr12-4843305-4	chr12	4842771	4843771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173416)	promoter-TSS (NM_173416)	-32.0	NM_173416	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	6.6505730824229	6.82502067300995	6.26374031406136	6.5398305604029	6.9157827764363	6.2810051971129	0.0135848628935552	0.966283532505044	0.992284576568462
Merged-chr16-75961670-4	chr16	75961150	75962150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39134.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	6.19573203434294	6.10133449729865	6.17599499302472	6.3968646988006	6.63629614958325	6.43442640887848	0.566131101600988	0.0399602064913212	0.248823061259451
Merged-chr10-26779070-4	chr10	26778560	26779560	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	6548.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.7568616991081	5.89234777738742	5.71629915368159	5.30285324620698	5.29564216467765	5.53480007850348	-0.795900547072345	0.014596153072443	0.130117495698718
Merged-chr14-120307996-2	chr14	120307496	120308496	+	786.583313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	1544.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.48430107185088	3.74913643079845	3.5028604336329	3.51698455636022	3.61944665542673	3.62852400704802	-0.0019399770024156	0.997281519195105	0.999426356843159
Merged-chr4-109475946-2	chr4	109475446	109476446	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	559.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	7.11968275434766	6.84487998871508	6.7080461222601	7.33872358917841	6.89589791409482	6.69954595047206	0.158630587322597	0.592892716624072	0.878314455943299
Merged-chr8-119835238-3	chr8	119834697	119835697	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5382.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.60658321579621	3.24599757125307	3.54190205420744	3.4498487251892	3.4977704037138	3.61200251888433	0.170204453049397	0.775148775860123	0.94459099355584
Merged-chr11-100327912-4	chr11	100327379	100328379	+	939.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6528.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	4.18067517319698	3.71361790900031	3.99196477070984	3.77687594281994	3.86535944526646	3.86381342631536	-0.433356261946112	0.417209987331087	0.787850452843557
Merged-chr12-52283779-4	chr12	52283287	52284287	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 7 of 10)	MTC|LTR|ERVL-MaLR	186041.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	3.63857892271343	3.4395026928667	3.58078262367074	3.87097749241536	3.83376114382606	3.7594767264324	0.917017837608752	0.0934482623108175	0.407193389963535
Merged-chr11-80044543-2	chr11	80044043	80045043	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36448.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	6.24073359067032	6.09345774580999	5.95221349720916	6.15946933146833	6.114670079161	6.21429233136142	0.0866573060103836	0.763554749983461	0.941793063578371
Merged-chr7-97580387-5	chr7	97579907	97580907	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	511.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	6.94322068189034	7.04506893764509	7.5409448693226	7.38826629379021	7.26739010210795	7.32831854068913	0.199719415023298	0.461394237813799	0.814992635038861
Merged-chr2-73004342-5	chr2	73003760	73004760	+	883.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23814.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.12789198365719	5.22527023777164	5.10592780262866	5.09157037021277	5.39561651429706	5.2698624315934	0.216892888844238	0.545234554273409	0.858059274547204
Merged-chr7-46834054-4	chr7	46833547	46834547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11757.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.73868585728456	7.06552761978669	6.53421182558081	6.89175065487102	6.84470992493957	6.4603555315473	-0.0831322390581679	0.777957772908512	0.945287027675221
Merged-chr7-128204935-2	chr7	128204435	128205435	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009943)	TTS (NM_009943)	1431.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	3.28561552953221	2.85275990583927	3.04858028262559	3.18206187245724	2.89531263941415	3.23759226985977	0.144043189055683	0.838716795730722	0.96255643337768
Merged-chr10-45018957-2	chr10	45018457	45019457	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48257.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	7.45193581663846	7.5896664736225	6.78382984474317	7.06303288306167	7.4564067467898	6.72224976610916	-0.301910985491569	0.364726502674195	0.750028369485675
Merged-chr1-120038809-4	chr1	120038304	120039304	+	978.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 5 of 13)	intron (NM_001012322, intron 5 of 13)	31824.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	4.16886195335392	4.46860944733198	4.18823871857247	4.5618447125294	4.39823025076435	4.10686921182608	0.228349962991608	0.63469748239781	0.896354115104213
Merged-chr4-109337001-1	chr4	109336501	109337501	+	804.5	f0_balb.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-6055.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	2.84189263489043	2.73276589463965	3.00925581924932	2.44524168601381	2.73141972220554	2.79212552669575	-1.04512131871187	0.192731342862524	0.579698871345607
Merged-chr8-116892846-4	chr8	116892345	116893345	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026844, intron 3 of 3)	intron (NM_026844, intron 3 of 3)	28591.0	NM_026844	66531.0	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	3.34815285327198	3.44763999178004	3.3458541140875	3.82520263104675	3.990412804369	3.76033910225027	1.71141314912724	0.00301090271364299	0.0422338491228601
Merged-chr6-34340670-4	chr6	34340156	34341156	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13490.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.56067210619949	4.61063793876445	4.56666668657464	4.50503410837743	4.67959872103899	4.78832451894854	0.188886936985713	0.648315368985819	0.901758971993113
Merged-chr1-131060546-4	chr1	131060024	131061024	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	37319.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.99246634058359	4.90126838848731	4.98649091446982	4.7073450473547	4.61718801118299	4.71838374861003	-0.641168799889341	0.098968917625343	0.419489873046179
Merged-chr8-71603164-3	chr8	71602683	71603683	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166213, intron 8 of 14)	intron (NM_001166213, intron 8 of 14)	5537.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	2.52379520282213	2.56970231398355	2.50655165744642	3.04015049928331	2.94189938408078	2.97197007795252	2.59090115069101	0.00157773265291855	0.0257171336998225
Merged-chr11-103281267-1	chr11	103280767	103281767	+	945.0	f1_c57bl6.idr	Intergenic	Intergenic	-13866.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	5.10441747004235	4.79315832649829	5.33788392445731	5.13060529408428	4.99804602468135	5.02052954278768	-0.0748253567080954	0.848443436034547	0.964356989789491
Merged-chr9-97106691-3	chr9	97106190	97107190	+	839.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	4351.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	4.81350480964178	4.68133982681371	5.03361584935674	4.92260535716076	4.68895463565724	4.92758448318078	0.00682702641700974	0.986456112601631	0.997046485784555
Merged-chr18-36719640-1	chr18	36719140	36720140	+	541.0	f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	7175.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	4.47779266014562	4.36967042462611	4.63188485205699	4.22510011825502	4.33379277089588	4.80027519811825	-0.0645364575322594	0.8904518938561	0.974528422443459
Merged-chr7-126809207-4	chr7	126808703	126809703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7682.0	NM_026884	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	3.26257185362703	3.38895340287184	3.54178731789203	3.69984765192594	3.61373651751343	3.44719734392831	0.730514069219647	0.214966075544981	0.608170317702451
Merged-chr19-5073798-3	chr19	5073308	5074308	+	619.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5730.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	3.93358115472912	3.92333822799379	3.99396469926067	4.78398516445854	5.17606672133442	4.33157581953078	2.29220684705042	5.82227520924252e-06	0.000251798272146909
Merged-chr2-173218981-4	chr2	173218495	173219495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-73.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	7.00617416778544	7.23602683274545	7.11294982101119	7.89716514096757	8.11404145145239	7.44641859280017	1.07451875045817	6.41475028566661e-05	0.00194951255156278
Merged-chr10-99204254-2	chr10	99203754	99204754	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58977.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.30168277999278	7.28618787858889	6.94319968811803	7.45010197106745	7.73479369924023	7.14185611898413	0.414960776471274	0.132263927563063	0.486472939164237
Merged-chr4-150513548-2	chr4	150513048	150514048	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 10 of 22)	RSINE1|SINE|B4	138626.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.5024427963492	5.32922453552197	5.22469372828387	4.42573208987482	4.20218928476847	4.72032902362293	-2.09593645402539	6.4581505894996e-07	3.6755799880375e-05
Merged-chr8-69006077-4	chr8	69005569	69006569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82667.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.61615225587881	6.29533360305541	6.20438210576138	6.81200927640448	7.17627057547802	6.81410348733697	0.883187829612777	0.00230383229904378	0.0344454914529205
Merged-chr7-79920643-4	chr7	79920140	79921140	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009682)	promoter-TSS (NM_009682)	0.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	4.76105032976032	5.06684298413664	5.19582201021764	4.8084603545004	4.56426502886975	4.48398558648862	-0.872148424803422	0.0384617540788861	0.242853667733796
Merged-chr2-34871023-4	chr2	34870504	34871504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080554)	promoter-TSS (NM_080554)	-42.0	NM_080554	66998.0	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	6.95075829401266	7.3103962192619	7.15546412764527	6.94337063749543	7.03027689492428	6.75390213533924	-0.346193633585674	0.183006859690847	0.566048838173882
Merged-chr4-40757850-4	chr4	40757331	40758331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021535)	promoter-TSS (NM_021535)	54.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	7.55147409594129	7.91208478110396	7.64097307651202	7.61213231255727	7.68816829483298	7.74224464828935	-0.0491500328129442	0.833660449498572	0.961104751385188
Merged-chr9-123926295-4	chr9	123925799	123926799	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42393.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	7.4647773341515	7.13421945743598	7.38133030623839	7.60479668480683	7.46835436062976	7.24477074027496	0.177127978018344	0.478810075336967	0.823891137932924
Merged-chr3-110250876-6	chr3	110250308	110251308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	191.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	6.90777260318722	7.5681660200673	7.38289227829593	6.74642983539061	6.92954689271457	7.00774627282501	-0.633203484105612	0.0268415868420222	0.195063101842734
Merged-chr17-35378667-2	chr17	35378164	35379164	+	952.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-953.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	4.8660521279316	4.60640147917762	4.17412441632975	4.33866754602797	4.59533173075494	4.08408792204239	-0.546974637726879	0.288468624613534	0.685895051202827
Merged-chr13-119809730-4	chr13	119809249	119810249	+	965.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18627.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	6.5089374883078	6.36701676930876	6.54831386386275	6.84899258589302	6.77055340468267	6.6415320378936	0.457583816568211	0.0787722609287312	0.370868463259694
Merged-chr18-63864032-3	chr18	63863525	63864525	+	717.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155330.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	2.69249305344749	2.42018397762728	2.45497478154915	2.63463477259921	2.61565251248003	2.8444747569305	0.938510639072121	0.242971160016233	1
Merged-chr10-75258399-2	chr10	75257899	75258899	+	578.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 6 of 15)	intron (NM_153406, intron 6 of 15)	46009.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	2.76103740552369	2.7537322879758	3.09685559941021	2.88614883066312	2.81322242567288	2.88138330579758	-0.0675480141917775	0.925121414892914	0.983120489108249
Merged-chr12-113124955-4	chr12	113124480	113125480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-15256.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	8.04512217299911	8.17596799856972	7.80490377549645	7.85409095483145	8.24144679472887	7.91035066179051	-0.00447106372544724	0.985372180509088	0.996904015210561
Merged-chr9-96364501-4	chr9	96364004	96365004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007502)	promoter-TSS (NM_007502)	-73.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	8.02298563955636	8.0522706436204	7.73542832459356	7.95496931097774	7.9211194189099	7.7099133316394	-0.114120645531173	0.620075371620427	0.890023686663772
Merged-chr5-66069238-4	chr5	66068759	66069759	+	684.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28920.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.05891988681881	6.44988746084391	6.41300456953704	6.35701914546533	6.71001249193385	6.23569252073054	0.237953505612039	0.439347439332585	0.801090064804651
Merged-chr14-64640235-2	chr14	64639735	64640735	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12296.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.06727903753205	5.09581925887362	5.01986684628228	5.15395328665475	4.74938975560794	4.86302991277695	-0.284871581110924	0.46126601288403	0.814992635038861
Merged-chr10-127291258-1	chr10	127290758	127291758	+	1000.0	f0_balb.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	465.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	7.93085468754753	7.77546278736494	7.57119567470172	8.05547427304703	7.93655982417224	7.15627613244652	0.0183469030814295	0.951615074387521	0.9888848425122
Merged-chr4-116632207-4	chr4	116631749	116632749	+	829.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4298.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	5.31958959654858	5.36489579261481	5.5962025063792	5.44575834435099	5.52685054578952	5.43422991460914	0.0981003498327543	0.769848547741765	0.943285248796136
Merged-chr3-154288830-4	chr3	154288331	154289331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41729.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	3.2003983239057	2.97191268508114	3.29711987686975	3.20409521622068	2.91747386243822	3.08497857447334	-0.384656352215926	0.56965140593192	0.8688875602138
Merged-chr11-89026331-1	chr11	89025831	89026831	+	830.0	f1_balb.idr	Intergenic	B3A|SINE|B2	26928.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.82752119173776	5.68388845975084	5.99148666672522	5.82561716355642	5.62310160778901	5.9635086648496	-0.0560550806184031	0.860664108672363	0.967588655430938
Merged-chr1-136145969-2	chr1	136145469	136146469	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 3 of 34)	intron (NM_001039472, intron 3 of 34)	14579.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	2.79527599607243	2.59239901969746	2.88227468359106	2.49018302228893	2.9025320504943	2.77572922790711	-0.117526167183404	0.8827018624361	0.973231787904583
Merged-chr18-68301289-2	chr18	68300789	68301789	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	869.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	5.35546415631184	5.5299018309522	5.23559645761807	5.51943142290213	5.28203430184951	5.33284848839792	-0.0139128849376449	0.968067823894996	0.99266738336646
Merged-chr6-113658550-2	chr6	113658050	113659050	+	709.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	20083.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	4.95400752776453	4.98828470207818	5.10212720919438	5.03970072697297	4.61570896552958	5.40227174075878	0.0697154453824876	0.869936037622751	0.96995859587526
Merged-chr9-121371732-4	chr9	121371240	121372240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	4782.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.37100410899012	4.49253163240446	4.33629264847643	4.52850448738369	4.27765045584769	4.80023149693119	0.339308298495617	0.458386951029257	0.812981239724864
Merged-chr3-105000862-4	chr3	105000358	105001358	+	755.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39149.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.19773796563397	3.92356443164814	4.07127140047708	4.10498228905507	3.9767251907623	4.18581784704337	0.0478631425616634	0.922283094795462	0.982542868764899
Merged-chr8-121643594-5	chr8	121643034	121644034	+	958.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	8399.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	6.48709731526819	6.43331064465706	5.87227789266478	5.68721567069832	5.19860584082871	5.44298006367818	-1.50865330319782	2.04746666898931e-05	0.000744930505436217
Merged-chr10-75222782-4	chr10	75222286	75223286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	intron (NM_001145826, intron 2 of 18)	10396.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	7.97889867642479	8.1932159238335	7.61979370819617	8.06416306689117	8.28380967343443	7.88504974263544	0.188777461897059	0.465368769357189	0.816993516517273
Merged-chr15-95797803-4	chr15	95797296	95798296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6953.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.09360146966873	6.74871116454788	7.1033168985516	6.88889964443907	6.76911618119965	7.06172780833599	-0.127343569370048	0.631436119920753	0.895122791781359
Merged-chr4-135272909-4	chr4	135272417	135273417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-157.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	7.72425500537923	7.67236649951796	7.44166538207958	7.32163454706222	7.56237094455683	7.27312114938707	-0.327950656397983	0.174094834323559	0.553317761609134
Merged-chr7-45567913-3	chr7	45567397	45568397	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025330)	TTS (NM_025330)	-2256.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	6.28723982837228	6.29018966168572	6.20680292363148	6.2719547213745	6.32064005780733	6.11512776594118	-0.030927171174697	0.911157260336231	0.980026994912141
Merged-chr15-84231287-4	chr15	84230797	84231797	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133167)	promoter-TSS (NM_133167)	-746.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.50334346616073	5.77725726329791	5.73505953136716	5.55191200704227	5.94279336568817	5.51983659177421	0.0458312220757489	0.893262196335202	0.975210713351106
Merged-chr4-116649947-2	chr4	116649421	116650421	+	587.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 1 of 8)	B1_Mus1|SINE|Alu	1753.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	5.55352441531423	5.46247223715589	5.67021454876696	6.07579271856571	5.82877436876895	5.59292565832677	0.540719857771846	0.100972782571753	0.423786054625959
Merged-chr15-76899862-4	chr15	76899368	76900368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-73.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	5.59469179667437	5.73136753392028	5.75479996261057	5.80089373114234	5.53203871156807	6.16732108976352	0.275458205957565	0.422670864935072	0.791448507539156
Merged-chr7-65469744-2	chr7	65469244	65470244	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98500.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	1.75033847134868	1.80845180260403	1.80451961720254	1.96140384779298	1.84278034963015	2.08510314972632	1.53950701795264	0.125889364782246	1
Merged-chr9-122950958-4	chr9	122950460	122951460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	40.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	7.17273776762911	7.85184964381677	7.42063738832686	7.77809410114443	7.97470291061452	7.55092957170898	0.384055050401955	0.17494702855405	0.554615474222784
Merged-chr10-77264316-2	chr10	77263816	77264816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 4 of 8)	intron (NM_030262, intron 4 of 8)	5016.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	3.71594325382448	3.5058798159754	3.83049855385891	3.85986793883284	3.56617039602211	4.3684278118293	0.872454738760594	0.145033373255302	0.507985592300096
Merged-chr10-40125359-4	chr10	40124863	40125863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	16891.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	7.33977228124302	7.17602504558285	7.09348637302212	7.00551252935918	7.46523771556307	6.85136393780492	-0.0918774226036815	0.743558156881082	0.935677319876317
Merged-chr8-11473244-4	chr8	11472761	11473761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-4668.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.75253174857494	5.17007877803181	4.94420699626762	5.64643619670405	5.3117333006298	5.55247955646496	0.306057359630878	0.455346979233885	0.810901192351474
Merged-chr9-27026857-2	chr9	27026357	27027357	+	864.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	3237.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	3.0432906599104	3.10736560580761	3.33819639798663	2.93535404009636	3.11151060465337	3.07646556467101	-0.519391157800881	0.437596046204186	0.800064171761167
Merged-chr8-126567100-2	chr8	126566604	126567604	+	690.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	26332.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.72897648775282	4.5081183315515	4.40020118053539	4.18060541340159	3.82133786846878	4.14413100586129	-1.38804062701845	0.00426029319197166	0.0545705781892823
Merged-chr10-99913222-2	chr10	99912722	99913722	+	702.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102599.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.92465098861855	4.48675936639912	4.2589267706423	4.06078534596685	4.2804693972948	4.28214844880107	-0.0961863073436154	0.848551037170419	0.964356989789491
Merged-chr17-56763178-2	chr17	56762678	56763678	+	840.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1573.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	3.68740507479465	3.70230220864277	3.90562455247384	3.69962614559999	4.00345011817003	4.06622718403106	0.534731637749526	0.316063158487097	0.71019071166749
Merged-chr19-40663260-4	chr19	40662766	40663766	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	3496.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.61234453349623	7.68965747939415	7.60340916738333	7.47980685497642	7.7870399718442	7.28773962418143	-0.131172418767846	0.596586408806689	0.879999324658518
Merged-chr2-153090750-4	chr2	153090240	153091240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17728.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	7.2867025326039	7.14653562970463	7.50002374154929	7.51357301674743	7.53119558194218	7.29157172898545	0.211718748957725	0.385903369266151	0.766720333092118
Merged-chr11-107324336-2	chr11	107323836	107324836	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134955.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	6.50639843488991	6.04705168014221	6.04334791106241	6.25027049511174	6.33491035285804	6.17226680820938	0.0539763793649492	0.860031715303782	0.967441103100897
Merged-chr8-6142726-1	chr8	6142226	6143226	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	-1037439.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	3.20576473426853	3.45715789412292	3.32323463884646	4.29107217108703	4.29453493750003	4.16927249718546	3.27658310066288	3.36282116951378e-07	2.07422997681914e-05
Merged-chr4-53114035-2	chr4	53113535	53114535	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	45860.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.30885295857437	4.0321825781775	4.28615772056354	4.39717991297033	4.1567645536716	4.35360396159072	0.24372898869884	0.604328804364971	0.883029381406957
Merged-chr14-66124489-4	chr14	66123996	66124996	+	900.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271402)	promoter-TSS (NM_001271402)	26.0	NM_001271402	13850.0	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding	3.6246265207299	3.50559770373556	3.77031038769852	3.06483999659912	3.18119517935265	3.32292764816941	-1.7765258208378	0.00537076157390684	0.0643192759127288
Merged-chr4-132510548-4	chr4	132510040	132511040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144907)	promoter-TSS (NM_144907)	-84.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	6.35545812669305	6.83426071858103	6.60713564955055	6.61355484715977	6.83226581007263	6.5629954730593	0.10316940310925	0.718363950612509	0.927337756147827
Merged-chr8-109563319-2	chr8	109562819	109563819	+	796.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	2542.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	3.63723719549476	4.22606184445947	3.71721823384221	4.14027980704455	4.06895627884794	3.89985342645082	0.427035742608899	0.450361194031302	0.80833544550959
Merged-chr9-22313454-4	chr9	22312958	22313958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5820.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	7.22941412077502	7.20854024919911	7.07846681028389	7.198775703928	7.62767608604021	7.20028189522856	0.285196452954652	0.26937157348402	0.666460750131431
Merged-chr1-149840378-2	chr1	149839878	149840878	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	82061.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.77748071645687	5.80823621058525	6.08599596822434	5.86630693286147	6.396172060998	6.20823906914906	0.504489954516458	0.117007665931678	0.4567645612395
Merged-chr2-164083807-4	chr2	164083308	164084308	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	9630.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	6.79140678710793	6.84196588030446	6.88952281903194	6.5614326309326	6.81807387254907	7.00141153789535	-0.0595930349537009	0.821248075750427	0.957942312428027
Merged-chr16-95703417-3	chr16	95702938	95703938	+	996.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	1031.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	6.96147937608985	7.39619722384038	6.63660479517234	7.31584974678185	7.30279138501499	7.04246277572184	0.271810737180787	0.360673917895147	0.74687560002537
Merged-chr13-42246561-2	chr13	42246061	42247061	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-54915.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	6.5152674458513	6.6320300156028	6.34513156505042	6.26817560189822	6.63461173934232	6.19552205354053	-0.185061167460839	0.530082320585463	0.851070276054813
Merged-chr19-3686757-4	chr19	3686245	3687245	+	955.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008513)	promoter-TSS (NM_008513)	-181.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	7.47843343293539	7.53918948178504	7.83175598646722	7.87034798780486	7.89418873481231	7.63792151848648	0.276799337794607	0.244589234428081	0.64198815440115
Merged-chr11-69682047-4	chr11	69681541	69682541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	43.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	8.66626434948078	8.74099443924536	8.48811056522516	8.41371691947194	8.68090615505893	8.26157023135723	-0.233321076163861	0.304220294814493	0.700779643733025
Merged-chr2-128871867-4	chr2	128871325	128872325	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	7893.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	5.72151252832292	5.79864662696874	4.94289346815379	5.10237123065805	4.82006501366546	4.70546313582894	-1.33891096582317	0.00200750583818017	0.0310591812020714
Merged-chr12-85365900-2	chr12	85365400	85366400	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8817.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.87598643152803	6.20327534769047	6.40863923555443	6.15620281022491	5.89491880144426	6.38000109719485	-0.0421779281856323	0.897005895164039	0.975903381556326
Merged-chr16-49860255-2	chr16	49859755	49860755	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4601.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.62928437375384	4.77154267775145	5.22233234032863	4.88328773392432	4.70988160524782	4.9364342560803	-0.100779084996531	0.811618970320056	0.955304895434479
Merged-chr2-144289784-2	chr2	144289284	144290284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	18880.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	3.3689791384122	2.73105406079271	3.03329721624657	3.12769356809282	2.96219331443536	3.1662084927579	0.0488391579556536	0.9477057092926	0.988008807662239
Merged-chr14-73172028-2	chr14	73171528	73172528	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29243.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.53848268119585	7.66407045088066	7.74824249851908	7.40977377528893	7.81413338123516	7.56033471227507	-0.0553177218714539	0.818933386450258	0.95714198333759
Merged-chr13-58067385-3	chr13	58066884	58067884	+	986.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35044.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	7.80919682957586	8.27410134490286	7.91627138304297	7.87232159454157	8.02448205134832	7.81749399104281	-0.154610365673188	0.523910047948207	0.848428438699863
Merged-chr13-52982131-2	chr13	52981631	52982631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	3.7997904558966	3.54076143372072	4.06773729252779	4.19337873573379	3.41365216197034	3.85265614231978	0.136005564626886	0.8269234209548	0.959278302444461
Merged-chr18-34887536-4	chr18	34887036	34888036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	26329.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.23794887287059	5.02350046120618	5.31193791620019	5.82085017076898	5.35683044262678	5.27936995067838	0.631380795213303	0.0911988905625279	0.401858647164494
Merged-chr1-125519381-5	chr1	125518870	125519870	+	830.960022	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41225.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	3.19150446624197	2.99907896519402	3.09468791174439	3.12800827411766	2.94099979035297	3.04808163569822	-0.265397921161474	0.68947844268217	0.917392209934871
Merged-chr2-132252745-4	chr2	132252267	132253267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011045, intron 1 of 5)	CpG	413.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	7.53766645757596	7.8370779281581	7.20245630284978	7.30084233051305	7.63732423581686	6.83960173846048	-0.360659796095674	0.250890192116104	0.648252208670623
Merged-chr15-86166371-4	chr15	86165874	86166874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-19354.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	7.15180011722171	6.54218393218074	6.73360665324915	7.06257914614652	7.1028943768822	6.40847148491416	0.101334131656118	0.757073486876303	0.939819795914786
Merged-chr10-51493318-2	chr10	51492818	51493818	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 5 of 8)	intron (NM_001291894, intron 5 of 8)	2420.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	5.2893010912719	5.33536999550195	5.58930180179999	5.18339123042564	5.50696712446657	5.40022882146407	-0.0516785340904098	0.883451838832265	0.973362870329156
Merged-chr4-136884706-4	chr4	136884244	136885244	+	852.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	1433.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	6.07575722241296	6.21802075323847	6.44967918279334	6.63130628188846	6.68330973632235	6.43633543561418	0.567087585150323	0.0439497097942504	0.263771808177083
Merged-chr11-46480697-4	chr11	46480210	46481210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	25779.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	6.58417443388546	6.33963223388979	6.50543066114116	6.25875382932601	5.85450974261481	6.51378845069656	-0.421266090929879	0.181074371157031	0.563309390781554
Merged-chr16-43363897-1	chr16	43363397	43364397	+	809.0	f0_c57.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	56299.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	6.54129153521098	6.78019199069116	6.86543308313743	6.76983916202991	7.00976500834582	6.77586096127137	0.206531314668334	0.436149776841878	0.799461119181469
Merged-chr11-115074345-2	chr11	115073823	115074823	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-12284.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	3.80536913777937	3.49458041479693	3.89144267757875	3.33271233897717	3.29048407711792	3.62149773852236	-1.16485911943271	0.0543658346530321	0.299402499821927
Merged-chr8-110919801-4	chr8	110919291	110920291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009179)	promoter-TSS (NM_009179)	-74.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	3.361527377576	3.512196861074	3.61680730935314	3.60880910229739	3.09877984095561	3.53112907699788	-0.258083475170298	0.685586611193845	0.916331487430729
Merged-chr1-146968137-4	chr1	146967631	146968631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	470444.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.30183531361461	4.51810111118788	4.5634356716453	4.35749540293053	4.18016689754103	4.62887152917263	-0.186980561927106	0.684367295106136	0.915853993305035
Merged-chr19-8840618-4	chr19	8840155	8841155	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290823, intron 1 of 10)	intron (NM_001290823, intron 1 of 10)	152.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	5.23183827971742	5.39616644873998	5.37762317523776	5.26974788986155	5.29577433402546	5.18676906855208	-0.15920539171023	0.643828230636521	0.899990653857957
Merged-chr18-9377538-4	chr18	9377001	9378001	+	910.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	72653.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.43920806323793	4.8903036291779	4.7186121242817	4.60715889930814	4.91186059960784	5.22116598905514	0.523179113843813	0.237925846770565	0.634468924721506
Merged-chr10-68279611-3	chr10	68279124	68280124	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-898.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.11318446513998	7.1792895722198	7.04849386163001	7.44258750429374	7.78678722306246	7.14658826608786	0.563864011260806	0.0361039971215218	0.233658037838344
Merged-chr2-153544052-4	chr2	153543575	153544575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14104.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	6.59187768615571	6.5740510937446	6.62165320629521	6.25852943764599	6.57109483149162	6.43745401460829	-0.257858166809087	0.339428531060097	0.729251186770858
Merged-chr11-70455248-2	chr11	70454748	70455748	+	788.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023158)	TTS (NM_023158)	3317.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	4.1169415837259	3.8735345056355	4.27956552961379	3.9217268185043	4.09158609987953	4.42622592029096	0.175541371212758	0.733477328113791	0.932101000333582
Merged-chr9-96398387-2	chr9	96397865	96398865	+	778.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33934.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.83797761351971	4.63845426501807	5.49037347664941	5.30429099246011	5.58400777577209	5.57850463727131	0.93692431306392	0.0277294539348564	0.198808915094593
Merged-chr13-5875635-4	chr13	5875161	5876161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14172.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.28569387863548	4.45271232901174	4.36422086211	4.00527947074006	4.04224863925529	3.96056420420455	-1.02016104987269	0.0314772519044637	0.21495190998083
Merged-chr7-24395065-3	chr7	24394477	24395477	+	903.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4651.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.68713207253964	3.66827549864255	4.45719026470082	4.713669403145	4.67363980331368	5.07456773624995	2.23976465915527	8.78377108257473e-05	0.00254750792693928
Merged-chr2-127087454-3	chr2	127086946	127087946	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	RMER6B|LTR|ERVK	16789.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	5.44959339082336	5.41225912785258	5.44011551363107	5.70137741645562	5.8637632985677	5.61995415423996	0.57561107311894	0.0732612241141693	0.355619372885081
Merged-chr16-92058248-4	chr16	92057735	92058735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017391)	promoter-TSS (NM_017391)	-87.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	6.43834404596995	6.4534290139986	6.43497473809122	6.53804499611713	6.29226533079784	6.12670142759355	-0.174064781739757	0.535800624325653	0.853668337370661
Merged-chr11-11762227-4	chr11	11761712	11762712	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	46750.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	5.55632997987942	5.64651020555972	5.94458718999577	5.25951188723987	5.58925028567574	5.53782098507001	-0.455468219759896	0.186331009034871	0.570809808295781
Merged-chr10-117684892-4	chr10	117684390	117685390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027468, exon 9 of 9)	3' UTR (NM_027468, exon 9 of 9)	25868.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	4.43070240808792	4.8405627992604	4.86616177236533	4.81215511084159	4.70115275488866	4.7456914706052	0.0680404932478538	0.871450329135549	0.970222087171093
Merged-chr6-87745409-4	chr6	87744923	87745923	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	14554.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.05129063036911	3.68467194223751	3.6474527518159	4.04487793472022	3.90732106388005	3.77624664962079	0.317548765376042	0.563143620694643	0.865817708624535
Merged-chr8-11450882-3	chr8	11450402	11451402	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27027.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.34531233716821	4.14175820026146	4.34609092539045	4.31744108904995	4.23556699795072	3.92871464117825	-0.268991516889148	0.579439206327758	0.87251983107891
Merged-chr18-67933981-4	chr18	67933460	67934460	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	CpG	787.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.94783607165974	6.0746262513805	5.89871153505381	5.4881743624951	5.06273705088497	5.25215752713021	-1.3202714063002	9.25047223808002e-05	0.00265693232304509
Merged-chr2-103945090-4	chr2	103944601	103945601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12894.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.30334419443734	6.33613091853027	6.01133585460288	5.99172962106009	6.19631220053541	6.40272919097642	-0.0549683816790167	0.855063281156883	0.966059905720255
Merged-chr9-73044291-4	chr9	73043795	73044795	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	-515.0	NM_023635	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	3.42103977579566	3.38022857691992	3.4978208568519	3.22645387381119	3.05602272321265	3.23859918565888	-1.07817124793884	0.0845088000275374	0.384882771356942
Merged-chr19-29465594-2	chr19	29465094	29466094	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER1A|Other|Other	54675.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	2.79532848733099	2.85459384910117	3.0049546528475	3.04272513185064	2.90755721204012	3.13396317092059	0.682958997058031	0.322156700913026	0.715589724600332
Merged-chr18-75694961-2	chr18	75694461	75695461	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2735.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	2.97161706721334	3.06108920426697	2.98616792918664	3.03986943432397	2.92196893327176	3.05856485073752	-0.0178200463750662	0.978702280724304	0.995160277495735
Merged-chr12-85600505-3	chr12	85600031	85601031	+	951.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	513.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	7.46153513486007	7.22645955107586	7.61997242538662	7.5663833068965	7.52084808133023	7.5460101914228	0.15346789501104	0.518579895009953	0.845379402570143
Merged-chr8-107589035-4	chr8	107588537	107589537	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	-555.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	5.60017146006876	6.0329357943234	5.74111349976135	6.10096924082271	6.16123233432242	5.74925653172538	0.379432838018828	0.251459005899129	0.648942676239293
Merged-chr2-91072252-2	chr2	91071752	91072752	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	3.66456140584239	3.4898590057856	3.80061162946504	3.68544259045601	3.95447558990375	4.01149408301486	0.782297291164671	0.154386869836413	0.523666674943519
Merged-chr5-114697990-2	chr5	114697490	114698490	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7055.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	6.09230665565788	6.0434777132948	6.09023197017642	5.17121696650941	5.0538879589617	5.61112954848019	-1.47914307731487	1.53451622477444e-05	0.000579328611756043
Merged-chr11-88864657-4	chr11	88864177	88865177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042541)	promoter-TSS (NM_001042541)	-91.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	4.17024958727132	3.93229484441746	3.81235413608326	3.92307742915489	3.5074446557751	3.77692706616021	-0.767443359168941	0.1672201828144	0.542868543829143
Merged-chr4-8691761-6	chr4	8691348	8692348	+	935.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	CpG	1442.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.18020827064823	5.93284600863204	6.4976753696478	6.49629006577984	5.73171949804653	6.16832915727635	-0.0826796738708242	0.81663384831364	0.956754861188725
Merged-chr7-43668334-4	chr7	43667811	43668811	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-3720.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	7.04733896634523	6.89972875041959	6.71163130146549	7.45151601506894	7.53278512304211	7.35332015901267	0.823292958278922	0.000842427816188714	0.0157485359985241
Merged-chr2-26188747-4	chr2	26188242	26189242	+	911.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	17833.0	NM_001039653	16871.0	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	2.0597399311033	1.98895802612103	2.11977257414068	1.85209694683707	1.68476373016265	1.85669152972768	-2.63931231514113	0.0225379615060172	1
Merged-chr17-37270212-4	chr17	37269819	37270819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013819)	promoter-TSS (NM_013819)	85.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	8.66432138872527	8.91237049810747	8.439836899372	8.85145989014099	9.19295461280132	8.59542304495806	0.299743163205065	0.241473461425343	0.638486249270074
Merged-chr3-37360798-4	chr3	37360292	37361292	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12139.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	3.1094803274736	3.20411423177728	3.61207787089268	3.56895971946194	3.40007315637368	3.77744705434286	0.999318892636575	0.119830317220092	0.46270551001204
Merged-chr5-115534483-4	chr5	115534051	115535051	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B1_Mus2|SINE|Alu	-24916.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	6.6236772138995	6.46027097387181	6.50158042694907	6.47003768859253	6.61700823377878	6.57822597842714	0.042282777049598	0.871959209153277	0.970261003150518
Merged-chr12-73584155-2	chr12	73583655	73584655	+	789.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-641.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.28983457498164	4.40370361945589	4.5499169600399	4.64309117812168	4.1299906676108	4.40916937342039	-0.0169032987842478	0.971278634963544	0.993727127580947
Merged-chr11-32554931-4	chr11	32554414	32555414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	21648.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.47852812265727	7.35410328303717	7.36012184027422	7.59293334103766	7.39764755655183	7.30428239548425	0.058766416675349	0.801682935973611	0.953057974289808
Merged-chr13-45370485-1	chr13	45369985	45370985	+	849.0	f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-19257.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.66053194648648	2.6806601704587	2.78286271464161	2.70118094074259	2.65452395294777	2.67088295354211	-0.168614573915051	0.818580285796572	1
Merged-chr18-73811634-2	chr18	73811139	73812139	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	3753.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	3.64772403250818	3.42826355073613	3.6141564752684	3.73548704231814	3.52107537120096	3.57726832914495	0.170698441865446	0.763269251169542	0.941755506558843
Merged-chr11-77684845-2	chr11	77684345	77685345	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1294.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	2.9602411009385	3.06694616345648	3.16851370109837	3.14418676886212	2.7686729093911	3.40010761288384	0.25946147239779	0.719502086623353	0.927884839305547
Merged-chr14-14068823-4	chr14	14068318	14069318	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52086.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	5.22773934339959	5.02066351038255	5.10452398795389	5.10425976716633	5.02260009903687	5.3565763847111	0.0757394154674789	0.837492386707387	0.962133986386607
Merged-chr3-52268348-4	chr3	52267821	52268821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-16.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.45657223128782	6.52619387794251	6.52379275874103	6.66705753636206	6.49431504299127	6.39940302727865	0.0433312474819442	0.870451525320453	0.970065609722504
Merged-chr3-41552973-3	chr3	41552473	41553473	+	986.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2761.0	NM_001130184	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	3.72637841208176	3.58849127381661	3.44836604479001	3.28749572307252	3.30908373248704	3.2865107358716	-1.15933463488484	0.0545708002068727	0.299995186549515
Merged-chr14-63459923-1	chr14	63459423	63460423	+	633.0	f1_c57bl6.idr	intron (NM_177628, intron 3 of 3)	intron (NM_177628, intron 3 of 3)	23529.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	2.77768200681861	2.99027584316809	3.08341286968804	2.93401623214134	2.95146516516038	3.15464301673909	0.278366106090577	0.688463727372575	0.9172299553909
Merged-chr6-38534804-4	chr6	38534294	38535294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025363)	promoter-TSS (NM_025363)	-67.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	7.71119009541268	7.9955096789157	7.80795156213863	7.74238269460783	8.04669961386377	7.55040798695302	-0.0566316359223987	0.82060996639236	0.957729351056532
Merged-chr3-95293020-2	chr3	95292520	95293520	+	657.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 6 of 9)	intron (NM_133858, intron 6 of 9)	10085.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	7.03541575647923	6.64375392514578	6.39116719472924	6.63781214080046	6.5895022431423	6.24006391169036	-0.346810708402983	0.263458822503054	0.661383847170923
Merged-chr5-67426719-4	chr5	67426211	67427211	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	CpG	1088.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	4.75417475834057	4.64069193646106	4.66092432755527	4.81851115560563	4.69897964644565	4.64564948568714	0.0876773491592693	0.827142433835987	0.959351941492659
Merged-chr3-126609363-1	chr3	126608863	126609863	+	564.0	f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	12412.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.51355394290665	4.32001916685152	4.20694757747075	4.12379903918865	4.09186981013024	3.97566201267984	-0.80027161068559	0.0934463956238351	0.407193389963535
Merged-chr14-79481653-4	chr14	79481146	79482146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018765)	promoter-TSS (NM_018765)	-378.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	8.34164576352362	8.42931394364467	8.18490862063941	8.43377720289064	8.39512720029242	8.38433511024583	0.108617076533287	0.599203406187647	0.880924908462167
Merged-chr12-86884815-4	chr12	86884299	86885299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	15.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.75886777657481	7.73209287461846	7.5590199375396	7.89942169782616	7.88723695207563	7.71981811049366	0.216556691611011	0.328910434803323	0.721070592936384
Merged-chr2-11589026-4	chr2	11588524	11589524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_152824, exon 8 of 12)	exon (NM_152824, exon 8 of 12)	14175.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	7.64717153258301	7.81473150509124	7.68890432393005	7.73864164278085	7.91411776244454	7.56557910326743	0.0502913496328732	0.827906167870178	0.959584381371691
Merged-chr14-103046946-4	chr14	103046467	103047467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008392)	promoter-TSS (NM_008392)	-45.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	3.91225426256148	3.76182628179786	3.79934656410807	4.71724894836922	4.24007145147856	3.9850336640294	1.50769048623503	0.00499667646787257	0.0611776715036405
Merged-chr5-110781974-3	chr5	110781392	110782392	+	667.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	3.35794902456663	3.44684558579876	3.73172564165589	3.56302585045749	3.34756089366466	3.80015097270647	0.215627309638872	0.721764171781962	0.928606209603791
Merged-chr3-18613614-3	chr3	18613149	18614149	+	739.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-133172.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	3.2910257291297	3.25627896622291	3.72287016998417	2.97789345293888	2.96622884750167	3.18049219899313	-1.68428649412637	0.0142145739243176	0.128083720269613
Merged-chr9-59598799-4	chr9	59598305	59599305	+	959.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361099, intron 2 of 10)	(TTC)n|Simple_repeat|Simple_repeat	9517.0	NM_001311092	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	4.99656499666445	4.25999458301458	5.02230522540488	4.85614951860907	4.33616718088579	5.11722456975961	0.00323247078112283	0.994967941676501	0.998961028701257
Merged-chr5-67839111-4	chr5	67838609	67839609	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	MTD|LTR|ERVL-MaLR	8322.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.26280867197232	4.11969688158796	4.07444275200284	4.15270316036039	4.14503099743565	4.14354177216058	-0.0332034937487618	0.943719359600058	0.987487430503038
Merged-chr14-73160811-3	chr14	73160310	73161310	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 5 of 15)	MTB_Mm|LTR|ERVL-MaLR	18025.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.84368531620409	3.67349548191774	3.82954816847292	3.93923614372089	3.88855770157504	4.08957089380628	0.587385272564433	0.254277524491739	0.651270631028434
Merged-chr17-48411532-2	chr17	48411032	48412032	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 3 of 5)	intron (NM_207219, intron 3 of 5)	1082.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	4.12542779107882	4.37618915391339	4.77615818192738	4.60568664304	4.17528919264823	4.46403648784028	-0.0526221069819865	0.915262479432165	0.980959026698783
Merged-chr11-115602535-1	chr11	115602035	115603035	+	570.0	f1_balb.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	1381.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	4.94905777702949	5.16003950936006	5.17756775120918	4.62473748146103	4.6622684244959	4.71222052254091	-0.965866129238352	0.0132231833647059	0.122144165343078
Merged-chr11-3189119-7	chr11	3188613	3189613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	intron (NM_030207, intron 1 of 32)	4350.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.41099890265155	7.00727832793849	6.87200494075199	6.5428898861716	6.4590477704295	7.32755620537946	0.0710681616772716	0.840666857252947	0.962819298477451
Merged-chr15-39771054-4	chr15	39770578	39771578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	25148.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	5.42732912704598	5.18821258954688	5.23671830179003	5.51221195011814	5.12687739131863	5.05681823681419	-0.0786400821638876	0.832687352749884	0.960721158746132
Merged-chr9-107770481-1	chr9	107769981	107770981	+	777.0	f0_balb.idr	non-coding (NR_153190, exon 1 of 24)	non-coding (NR_153190, exon 1 of 24)	521.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	7.8382040592529	8.18388807890722	7.84729380619641	8.07702425246503	8.33992946543026	8.08762419982143	0.292085686719211	0.215720801593525	0.609112973600893
Merged-chr11-115420545-2	chr11	115420045	115421045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027862)	promoter-TSS (NM_027862)	419.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	6.66477486586618	6.10407026189284	6.55544242179611	6.70910769525337	6.27668680308088	6.23680378450687	-0.0539857044999537	0.866729187506667	0.969114221403526
Merged-chr6-125604360-7	chr6	125603833	125604833	+	822.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011708, exon 15 of 52)	exon (NM_011708, exon 15 of 52)	51385.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	3.42406290675584	3.13836093289586	3.47904442440577	3.49034213411729	3.13608177713275	3.38778922787656	-0.0345624361668426	0.956835626064643	0.989887454023164
Merged-chr10-99302264-4	chr10	99301738	99302738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39007.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.84562888188436	5.66396556471076	5.44215421672922	5.60226015155778	5.54261225031529	5.41147091542988	-0.271476725712283	0.416758015979265	0.787630858640525
Merged-chr12-80113082-4	chr12	80112618	80113618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-105.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.06254315597535	6.932445225111	6.72366832729358	6.90172070320528	6.91568538507758	6.30928595096582	-0.258842068471779	0.384095200120706	0.765293063085998
Merged-chr11-106780791-2	chr11	106780291	106781291	+	929.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007840, exon 13 of 13)	3' UTR (NM_007840, exon 13 of 13)	-1254.0	NM_015810	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	4.78692368087302	4.60268641947598	4.7754450521086	4.70142308678349	4.66074246667795	5.04803726409599	0.187937024408122	0.648564829922366	0.901862679938551
Merged-chr2-26972607-2	chr2	26972107	26973107	+	716.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290463)	promoter-TSS (NM_001290463)	-809.0	NM_001290464	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	2.79091698512497	2.81443865165518	3.07315929579657	2.95847229883486	2.86738719952964	2.91244894547173	0.0973394068736667	0.88955319577096	0.974240767538138
Merged-chr2-167301213-2	chr2	167300713	167301713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	47965.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.84912526833488	3.62717675777479	3.56263038075079	3.35449073187855	3.45806203573271	3.68507456703106	-0.683391846335127	0.242265534898183	0.639361560081448
Merged-chr7-144470790-4	chr7	144470286	144471286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007803, exon 1 of 18)	5' UTR (NM_007803, exon 1 of 18)	149.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	5.14677019305301	4.93553796768888	5.94075835519702	5.81832515199519	5.69876017534376	5.65047853667568	0.592569568107851	0.158395662896652	0.53018167739268
Merged-chr9-44551331-4	chr9	44550838	44551838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24917.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	4.79088485975488	4.86346232189188	4.90257010633857	5.03902719315504	5.11096878936319	5.14052708754066	0.534084265075054	0.149361364081317	0.515759283467481
Merged-chr12-52851000-4	chr12	52850512	52851512	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151629.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	3.03686503618709	3.29014688626013	3.18651786165446	3.13326596824083	3.12274979546842	3.31384163153594	0.0490883168982856	0.939312721811396	0.986648315447418
Merged-chr10-121498842-10	chr10	121498328	121499328	+	978.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22578.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.28933780852472	7.2712550601942	7.13242836881605	6.84776274683253	6.91725632432904	7.08953354824196	-0.434562818370695	0.0724722211099886	0.353619220906581
Merged-chr2-164858947-2	chr2	164858447	164859447	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1239.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.17850306758848	6.21711069077425	6.3441080267541	6.19209786860072	6.45123980333133	5.86902880266765	-0.0578189979766573	0.851977545136755	0.96531854415899
Merged-chr4-56222619-4	chr4	56222121	56223121	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	518804.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	5.81589132570523	6.01746578866279	5.76455879306792	6.18088663011071	6.26224036320243	5.95386776200145	0.470502763705258	0.12153817217698	0.46635684715251
Merged-chr14-45387653-4	chr14	45387180	45388180	+	719.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019425, intron 1 of 5)	intron (NM_019425, intron 1 of 5)	1116.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	3.1201730206303	3.03986591220409	2.98816729361456	3.17908773883326	3.05205324452084	3.12148171836292	0.283241940500851	0.664739894674716	0.907721942545399
Merged-chr2-11488815-2	chr2	11488315	11489315	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 5 of 14)	intron (NM_133232, intron 5 of 14)	13275.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.040241273809	2.89613734102255	2.90006113359889	3.50608662776045	3.22967057959869	3.28545938043227	1.75140607221871	0.01050175143131	0.103928369778359
Merged-chr1-183599448-4	chr1	183598933	183599933	+	896.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149544.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	2.93573999093597	2.72428880891635	2.98312910486323	3.03797387817664	3.16673775764984	3.17173854062133	1.15287841220799	0.0969351470327644	0.415119902949164
Merged-chr11-72217252-4	chr11	72216735	72217735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1643.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	5.93477157023101	6.07636417008286	5.78146039079944	5.68597959445351	5.71614887551697	5.40422186785632	-0.580927598676837	0.0722658689136822	0.353157446871531
Merged-chr4-63591831-2	chr4	63591331	63592331	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	8933.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	2.89485834675658	3.06239852957605	3.24128568621627	3.06807241256665	2.8345874418697	3.14739205111013	-0.230738998429109	0.739575392270797	0.934245371298156
Merged-chr11-77440658-2	chr11	77440158	77441158	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-23255.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	3.93537039665887	3.97664769159951	4.07988715520585	3.77725478319063	3.92155836611999	4.43629825518692	0.205949346164364	0.701090338458716	0.921133803073895
Merged-chr11-48994204-4	chr11	48993702	48994702	+	849.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1956.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	4.50281613181515	4.28708623027615	4.39083614905289	5.06976960123255	4.95141382435424	4.5527857447011	1.16071151396001	0.00780523102530764	0.084601917996771
Merged-chr7-122289810-4	chr7	122289272	122290272	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 1 of 16)	CpG	647.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.04230109262138	6.09668389173265	5.90421369187256	5.80093020912882	5.73483116546508	5.65211301993293	-0.514806036615134	0.0876447338568607	0.392674080053934
Merged-chr17-28435117-4	chr17	28434624	28435624	+	945.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	intron (NM_010220, intron 3 of 10)	51025.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	5.46987600534324	5.44193096245704	5.65741447009888	5.38296306227263	5.80876214255502	5.64010022301882	0.206886810698606	0.542705034866958	0.857318248006765
Merged-chr19-45056475-4	chr19	45055971	45056971	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001178013)	TTS (NM_001178013)	8895.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	3.06835820329769	2.6634467769887	2.87166505003298	2.63627367259746	2.52108746399365	3.0029477724842	-0.740579220817737	0.35602540191096	0.742919807519939
Merged-chr18-6767667-2	chr18	6767167	6768167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 1 of 6)	intron (NM_181070, intron 1 of 6)	2500.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	3.13354402140433	2.82253790745683	2.88009643493465	3.04005354314931	2.77285547708931	3.0745585312436	0.0465886908577899	0.948301025965862	0.988083630162243
Merged-chr16-33080230-4	chr16	33079730	33080730	+	735.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	17709.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	3.40448381214963	3.43946687557224	3.38027874528318	3.22066581256693	3.17210508822768	3.50438360218759	-0.438880531229804	0.475624359669612	0.822063360316711
Merged-chr17-26544573-3	chr17	26544090	26545090	+	984.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16922.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.90285606877552	3.60953335167718	3.39160110307287	3.52476416732584	3.31000085016422	3.83934369824877	-0.294550451986781	0.639767677828451	0.898199312621371
Merged-chr1-191025505-3	chr1	191025037	191026037	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027298, exon 1 of 2)	non-coding (NR_027298, exon 1 of 2)	186.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	6.84035634965397	6.72453773995576	6.70438130297866	7.17992291387455	7.08332940978744	7.0150362507766	0.515731748421642	0.0349675039091079	0.229443739868232
Merged-chr13-78237307-4	chr13	78236803	78237803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045195)	TTS (NR_045195)	-38430.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	6.07090893064441	6.39329782614498	6.1518844069239	6.33247855350063	6.57997168885645	5.78733956841974	0.123467149004485	0.716238996323793	0.926569584146506
Merged-chr2-164913252-1	chr2	164912752	164913752	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1502.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	6.41158630563295	6.5575804284276	6.51771580003804	6.62464399472891	6.85431170297915	6.52347362597794	0.300832459028727	0.263867686797971	0.661864470315546
Merged-chr15-5607619-6	chr15	5607123	5608123	+	955.8472289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111305.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.1393858626942	4.10058364215589	4.0528409366176	4.30773287034066	4.14257553890674	3.96974818747075	0.147666697437363	0.759967984087447	0.940572672765463
Merged-chr5-102034813-2	chr5	102034313	102035313	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35108.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.71003036641142	6.73163457794538	6.82829841323231	6.8441058994265	7.05628488403303	6.88667949518008	0.284966370199097	0.254235872473499	0.651227018740762
Merged-chr9-123926826-2	chr9	123926326	123927326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41866.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.76391122287197	6.61266453797143	6.85241330172575	6.61169158616151	6.72372859655651	6.54770196631668	-0.166455852263477	0.522157057263548	0.847473464378842
Merged-chr11-116627803-3	chr11	116627310	116628310	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	-791.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.98901693669331	4.3471727482067	4.83094636968263	4.9053775122905	4.79243879189369	4.53031242330348	0.0153769844176041	0.973091284167271	0.993943197210219
Merged-chr18-23430776-1	chr18	23430276	23431276	+	1000.0	f0_balb.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15367.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	3.65448468178293	3.80399980799115	3.74956458741625	3.73511158292186	3.48684105122285	3.37241551911034	-0.670727094590706	0.244614059661222	0.64198815440115
Merged-chr19-7557443-4	chr19	7556952	7557952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139269)	promoter-TSS (NM_139269)	-7.0	NM_139269	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	5.76386249031255	5.53427545805733	5.52983464278616	5.73803750455862	5.90468197020514	5.70509582242797	0.319408929555904	0.318037099370325	0.711817713144205
Merged-chr5-99977773-9	chr5	99977116	99978116	+	865.074097	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077265, intron 1 of 8)	intron (NM_001077265, intron 1 of 8)	1322.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	5.89900071977334	6.44429665335253	6.13894765141269	6.20425497237367	6.46265785293309	6.28300399931032	0.233175493168949	0.454988374783859	0.810667376538136
Merged-chr10-75517400-4	chr10	75516908	75517908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175133)	promoter-TSS (NM_175133)	-27.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	8.190995971836	8.27545934634755	8.22957602186085	8.30319645207771	8.53924245921433	7.97999574530747	0.0989976873035715	0.677186188468003	0.912699165331091
Merged-chr2-33242108-2	chr2	33241608	33242608	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011923, intron 2 of 4)	intron (NM_011923, intron 2 of 4)	26147.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	2.92805305967774	2.72754321461778	3.01490865464958	2.81414607853649	2.64940373917744	2.85274647393692	-0.617397300330812	0.398297806537342	0.775020487248618
Merged-chr5-130852326-4	chr5	130851869	130852869	+	757.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403577.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	4.70524582440635	4.73403697944201	5.00296817890391	4.82786925741467	4.85266434723949	4.96513785267456	0.155593232279194	0.69226793301211	0.918622600591208
Merged-chr16-21913555-4	chr16	21913053	21914053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	21584.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	6.27845262225567	5.98680931278934	5.43335173115095	5.93301403786651	6.05868068611913	5.24423650147674	-0.265494173848582	0.524333988993351	0.848650426908011
Merged-chr7-4149373-4	chr7	4148870	4149870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175529, exon 1 of 1)	exon (NM_175529, exon 1 of 1)	502.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	9.09339706835605	9.77636332584674	9.15521200976116	9.0934447892962	9.56349082545885	9.23425761049172	-0.0954394712192786	0.72493791860923	0.929475409375828
Merged-chr11-109377537-4	chr11	109377014	109378014	+	795.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	MTD|LTR|ERVL-MaLR	-13860.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	5.01503468856871	4.76987216141665	4.84943676160013	5.2278523963907	4.95289919943165	4.87709375112129	0.319232142817981	0.414252953765752	0.785695810082599
Merged-chr7-101907129-4	chr7	101906646	101907646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	-787.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	7.58625147617998	7.60631373528115	7.63467195565875	7.819246187374	8.10707694412037	7.61518639657365	0.380764005908992	0.11399259875917	0.450886303830234
Merged-chr13-75825118-1	chr13	75824618	75825618	+	749.5	f0_balb.idr	Intergenic	Intergenic	-14767.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.17183911972236	4.26510503042009	4.31441499046153	4.19779158481844	3.82341679426501	4.25159353076857	-0.436136175251297	0.377576189571572	0.759978294360939
Merged-chr5-122274953-4	chr5	122274424	122275424	+	979.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9474.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	2.76753967267485	3.00996050968421	2.60690699758451	2.77730550601557	2.6747059906462	2.87432759906289	-0.184686342057966	0.809117716825924	0.954721853010197
Merged-chr9-63608985-3	chr9	63608495	63609495	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	6349.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	5.28155240195523	5.47746269314312	5.01801957495441	5.48550363193735	5.35201555252679	5.22902201627634	0.153353346524917	0.674467545286659	0.911852710156386
Merged-chr6-86658749-2	chr6	86658249	86659249	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10410.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.15955050129806	4.11449726176601	3.8273732733763	3.96813384209495	4.20247918833084	3.84419669141932	-0.074296319884108	0.886943400649065	0.973794308941933
Merged-chr1-87624997-2	chr1	87624497	87625497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	4685.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.93370728246007	6.93401454916864	6.87133842295629	6.98737847859159	7.09714999342023	6.9151326857035	0.14137086448266	0.559567560311747	0.864986578702902
Merged-chr2-60809618-4	chr2	60809147	60810147	+	905.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	71791.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.26575188599436	6.44260745542448	6.77431416473952	5.91757609072988	5.65291195208137	5.83830399072986	-1.19091624441124	0.00014071131025443	0.00376593975672261
Merged-chr4-126109798-4	chr4	126109267	126110267	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	5810.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	6.48342821645696	6.18645790535039	5.96071551353782	6.19345664856783	6.28291820601592	5.78373980777218	-0.202235303233214	0.537817864446327	0.854867563479425
Merged-chr15-98484121-4	chr15	98483604	98484604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	7.81059621381158	7.7915836756005	7.38819220635422	7.56070989772664	8.0227680125463	7.37649564609468	0.0143815527247057	0.95926603623753	0.990174309444982
Merged-chr6-83657283-3	chr6	83656776	83657776	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1160.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.74844409844305	5.93981726382732	6.0521029603584	5.24315744354993	5.16066083255594	5.22022932356331	-1.34280525380929	5.4390421830852e-05	0.00169375681875057
Merged-chr15-58744651-4	chr15	58744146	58745146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78781.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.68539538326298	7.86384634362019	6.90047373168462	7.53760820035249	7.83101043239452	7.1243122633932	-0.0277517572753814	0.934514673235128	0.985727536128156
Merged-chr4-34642583-4	chr4	34642070	34643070	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	MTE2b|LTR|ERVL-MaLR	27613.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	6.43273543168805	6.58556966950084	6.49781064978667	6.08706333162143	6.29279831821522	6.29705874752689	-0.456909139294835	0.0959482163607651	0.412951471230873
Merged-chr10-128535363-4	chr10	128534865	128535865	+	849.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9506.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	5.38543759445728	5.35745523029957	5.62390516134665	5.30053352671127	5.20604272672256	5.25486137302186	-0.393739239099317	0.252376185048063	0.649835540406508
Merged-chr7-7299545-4	chr7	7299049	7300049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302386)	promoter-TSS (NM_001302386)	8.0	NM_001302387	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	8.65674040833627	9.09241867498219	8.57718210204172	8.88584456048529	9.10187258562891	8.55675359962254	0.0986018664664414	0.702588624029527	0.921908665861083
Merged-chr11-107105406-1	chr11	107104906	107105906	+	577.0	f1_c57bl6.idr	intron (NM_001359590, intron 2 of 27)	B3|SINE|B2	26516.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	2.49558490528402	2.57462486850598	2.66832589216902	2.43847140959446	2.32208577026967	2.42749852778464	-1.16149094821718	0.154101603206907	1
Merged-chr2-170219279-2	chr2	170218779	170219779	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76604.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.19814687747623	5.38253242403757	5.44933655369347	6.04269595956046	6.24018075787103	6.05354813325406	1.41985307233785	7.09949176510196e-06	0.000299106081412964
Merged-chr7-12943686-1	chr7	12943186	12944186	+	655.0	f0_balb.idr	Intergenic	B3A|SINE|B2	16270.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	2.2000971226187	2.29405230121155	2.43362908491357	2.04888328731746	2.13003098337039	2.18866155739752	-1.36512399453507	0.133780104121568	1
Merged-chr9-108478865-2	chr9	108478365	108479365	+	683.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008483)	promoter-TSS (NM_008483)	-997.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	2.90019955121621	3.05567758537874	3.09592690955131	3.18890925377727	2.88962964383378	2.86247920285893	-0.128089786163118	0.85443330564222	0.965987623019113
Merged-chr7-110590241-2	chr7	110589741	110590741	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	24679.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	4.05625775698027	3.93559355206114	3.93479736160713	3.93510220630302	4.21989741122004	4.05388804567569	0.3011649394556	0.544415614246946	0.857674183000447
Merged-chr9-59736988-2	chr9	59736488	59737488	+	768.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	13661.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	6.16297819686152	5.7957590181118	6.10938609234911	5.70768661304602	6.05525351038939	5.53636918944137	-0.401386956380714	0.237798192625592	0.634356560418258
Merged-chr15-6426057-1	chr15	6425557	6426557	+	715.5	f0_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19276.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	3.42257265572508	3.25926215812231	3.37038848527266	3.20421859540967	3.16618148025095	3.21485791167314	-0.650124412614258	0.293128109029114	0.690190772969237
Merged-chr8-77451638-4	chr8	77451150	77452150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-65406.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.70888419308043	7.81039362794928	7.3532616599594	7.30116610469382	7.53645291002288	7.0411188246215	-0.477363105079864	0.0761559115537428	0.363264221999761
Merged-chr2-160250105-3	chr2	160249610	160250610	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77384.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.76611917320298	5.60030802155301	5.74730184044398	6.21588991922394	6.04578059963966	5.75619472536241	0.574249281317593	0.0696000845985174	0.345233015754005
Merged-chr14-75065491-4	chr14	75065008	75066008	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	49481.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.84222503965329	6.00068988604167	5.82228670516516	5.8544127239906	6.04740979023886	6.17770400851875	0.232711453418964	0.442733945834154	0.803309923833629
Merged-chr3-88407200-4	chr3	88406715	88407715	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	3182.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	4.46711061191407	4.3192999165658	4.20302595939926	4.82904549173889	4.8938809849202	4.22307023187384	0.866954461068323	0.0716069032074476	0.351064529936678
Merged-chr8-70758734-2	chr8	70758234	70759234	+	760.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009001)	TTS (NM_009001)	2187.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	3.05328904593165	3.09647365476533	3.28970093868662	3.24707144831052	2.78929618877801	3.51533114225538	0.28121299833583	0.699885465123846	0.920753377048759
Merged-chr7-80070078-2	chr7	80069578	80070578	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	5179.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.15546802392512	5.0190645647318	5.24677708123674	5.21571181220621	4.78999101291365	5.21683004453481	-0.125603574619975	0.745192646886156	0.936052500862041
Merged-chr7-125582144-1	chr7	125581644	125582644	+	618.0	f1_balb.idr	Intergenic	Intergenic	-21285.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.65062025159408	3.68268097673352	3.64927771099067	3.75076835734795	3.71982019892836	3.77166392241887	0.283031818152073	0.594897283784038	0.87924603206665
Merged-chr6-40594992-4	chr6	40594490	40595490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9185.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	3.80525081958348	3.3337217209986	3.54070074807151	3.32338856071642	3.49682373335516	3.44622180408077	-0.549051915130867	0.369481613085605	0.754197418440866
Merged-chr7-27489133-2	chr7	27488631	27489631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	2178.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	3.14189133530035	3.32799363210806	3.74588544153562	3.40695952279876	3.47698381334023	3.85957161610024	0.599910683639609	0.35726719181049	0.743880571645134
Merged-chr17-70122265-3	chr17	70121760	70122760	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	153187.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	3.54819135882643	3.54688066293835	3.58063558554679	3.3086776434304	3.28834204455318	3.19840135196168	-1.12305626274901	0.0628593840483215	0.326105344964944
Merged-chr12-36156926-4	chr12	36156380	36157380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025840)	promoter-TSS (NM_025840)	-55.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	7.02931426784266	7.1423937619337	7.04607194865004	6.93822597697857	6.82361204558018	6.34213938993445	-0.515945407064624	0.0655626351053577	0.33396606928966
Merged-chr6-98140947-3	chr6	98140444	98141444	+	635.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	149161.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.2180831839969	3.38244122194695	3.19228576697007	3.2536004488386	3.34924523577686	3.64215746338023	0.577248332720193	0.358606034092772	0.744966567253991
Merged-chr17-24650019-5	chr17	24649641	24650641	+	819.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357796, exon 1 of 6)	exon (NM_001357796, exon 1 of 6)	164.0	NM_001357796	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	3.60210724178932	3.89399662863029	4.0983224224072	3.66510380340566	3.71608403523256	4.16492678532947	-0.0446407166479007	0.937770208774057	0.98614846613846
Merged-chr12-111377199-2	chr12	111376699	111377699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183016, exon 1 of 37)	exon (NM_183016, exon 1 of 37)	519.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	7.90363872730107	7.91764253326657	7.93278303897418	7.97370423086493	8.02071653650929	7.84558846714521	0.0504978662675472	0.811118655064845	0.955118818202392
Merged-chr15-59817079-2	chr15	59816579	59817579	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22120.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.96047633113522	5.13887864150561	4.67758993347468	4.9942550430949	5.0032061788188	4.8288488902354	-0.00514403366527554	0.989707660464336	0.997611022725407
Merged-chr9-71897629-2	chr9	71897129	71898129	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253865, intron 3 of 14)	intron (NM_001253865, intron 3 of 14)	-1533.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	4.0765259972028	4.71335969115418	4.63424266094078	4.25732390894463	4.54744184129377	4.62310531925445	-0.0511881808326886	0.916966669725922	0.981488624026275
Merged-chr8-106574554-3	chr8	106574035	106575035	+	856.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	2.97839856878093	2.84224074304529	2.73870531412949	2.96541822218495	2.70505122239816	2.93856878836685	0.0530942177687921	0.941815353470342	0.987058762320129
Merged-chr4-134731619-4	chr4	134731110	134732110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27320.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	5.57087342164002	5.62271854904116	5.43593962167835	5.37891186558382	5.54757533393008	5.52858845665837	-0.120892775774893	0.712385719993266	0.925048627306913
Merged-chr15-24589808-2	chr15	24589308	24590308	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	823956.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.12570744508225	3.79478647230882	3.5418082287479	3.93652227975344	3.84960681912914	3.99504329601089	0.225083149733733	0.688926929865867	0.917235946766438
Merged-chr11-46127993-4	chr11	46127477	46128477	+	956.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311209)	promoter-TSS (NM_001311209)	73.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.33607049432776	3.27590746581135	3.00140042476932	3.42562042051015	3.20500588390102	3.32219925803111	0.40289938163552	0.537930009356721	0.854901545515481
Merged-chr7-25316710-4	chr7	25316216	25317216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160400)	promoter-TSS (NM_001160400)	-448.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	4.59638285483019	4.30630009446423	4.80779531719991	4.59553380224584	4.40777040396351	4.76564635675665	0.0299067077689629	0.947048554736172	0.988008807662239
Merged-chr17-28012985-4	chr17	28012470	28013470	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67614.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	6.48471412093478	6.56188242333	6.36211719131268	5.84082536935365	6.17409133490548	5.5668046205282	-0.957341416641521	0.00315998564189417	0.0438372933128927
Merged-chr16-94526943-4	chr16	94526463	94527463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-334.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	7.65984662379533	7.86512243817259	7.66114219752569	7.82447183176068	7.8088069605357	7.36636022269001	-0.0615175076131556	0.804076790968124	0.953557286986578
Merged-chr16-88478579-3	chr16	88478097	88479097	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28381.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	2.95668702774112	2.90670474951983	2.71188588760596	3.00215337514839	2.89670638480213	2.97725332322298	0.432244340634673	0.542917180373349	0.857468369859798
Merged-chr9-61704677-2	chr9	61704177	61705177	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	209833.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	4.05329433607886	3.89165493360507	3.78490027287948	4.06808498321887	3.8945816361617	3.62926463337095	-0.112959512343745	0.834885675480335	0.96138272464184
Merged-chr7-122260296-4	chr7	122259797	122260797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-28828.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.5237836769846	6.55151635710453	6.35965139833128	6.33852916298541	6.48962989973395	6.81615115853939	0.11008964830117	0.698902378477314	0.920482326683788
Merged-chr2-153149011-2	chr2	153148511	153149511	+	598.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010407, exon 12 of 13)	exon (NM_010407, exon 12 of 13)	-12290.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.02351372232446	3.06661473191065	3.25546696241806	2.99547139632321	2.91922725995044	3.47961290431849	0.140850910173742	0.840393635055567	0.962819298477451
Merged-chr8-104339440-4	chr8	104338978	104339978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1116.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	6.6821039238304	6.24078413473208	6.85266364460405	6.64644654342091	6.34365789263738	6.91080866258887	0.0560963109507041	0.860211995019118	0.967441103100897
Merged-chr18-36783161-4	chr18	36782655	36783655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305627)	promoter-TSS (NM_001305627)	50.0	NM_008214	15115.0	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	5.96808885948703	6.69439083417271	6.23428135084718	6.36695378752544	6.14863256978348	5.90034071395839	-0.306193041473258	0.372801066777377	0.756604579731506
Merged-chr15-78864053-4	chr15	78863549	78864549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-8520.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	8.6524483447591	8.56038058306638	8.45361502288272	8.80684541344316	8.92541159044116	8.49192726274782	0.275486274821833	0.216497804949839	0.610014877730732
Merged-chr5-23617852-3	chr5	23617349	23618349	+	653.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359174, intron 2 of 16)	MIRb|SINE|MIR	-1278.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	4.19097856871723	4.60808156662498	4.29956369961918	4.20138126289439	4.07666731274435	4.27745057178662	-0.546535524303964	0.250999996970543	0.648387437456923
Merged-chr12-3360189-4	chr12	3359688	3360688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4944.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	7.30664810262583	7.66976224858819	7.42550547171431	7.92801819190381	8.19188486791939	7.70176817943559	0.697555042523912	0.00631351779397596	0.0725100329332163
Merged-chr6-89340775-3	chr6	89340304	89341304	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 8 of 31)	intron (NM_008881, intron 8 of 31)	21809.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.53741005414992	3.61170604215653	3.64986693359752	3.85225152898267	3.75815731420231	3.82334402197452	0.714494108454464	0.182460109893233	0.5653332996564
Merged-chr5-150601383-2	chr5	150600883	150601883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6858.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	6.834091536841	6.69410973355833	6.64793949239481	6.35115338642096	6.45676436122804	6.46497321909043	-0.491916919855292	0.0594480078423956	0.315670059767074
Merged-chr4-105239775-3	chr4	105239259	105240259	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82412.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.5785982454775	3.63206348964477	3.5575685219061	4.08002094673528	4.18693377318423	3.85451988863241	1.49585826824193	0.00554703285783274	0.0659126817352415
Merged-chr15-53344027-1	chr15	53343527	53344527	+	761.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2156.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.32514868365642	6.02034767482925	5.68995689554868	5.9249001887566	5.80611602419595	5.66681819749265	-0.424674903547185	0.204417851393031	0.594949662456522
Merged-chr16-4914811-2	chr16	4914311	4915311	+	821.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 5 of 17)	intron (NM_001357062, intron 5 of 17)	-24300.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	3.2202038626972	3.05011096922588	3.46620854023972	3.18447499249968	2.93477129972551	2.97503826878696	-0.934571742058351	0.173160381302074	0.551916379659197
Merged-chr5-135779834-2	chr5	135779334	135780334	+	789.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1185.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	3.56340368661007	3.47905927573476	3.84418879677697	3.74636732896147	3.94802978267339	3.60539270038433	0.521628673454718	0.360095213881063	0.746364492629605
Merged-chr15-12118592-4	chr15	12118072	12119072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358823, intron 2 of 18)	CpG-4794	721.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	7.58946135119135	7.42868881795477	7.20279570436552	7.58637871794761	6.75641461214188	7.17370901260083	-0.300710941561532	0.324145870677418	0.717287790132387
Merged-chr2-75702915-6	chr2	75702346	75703346	+	877.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	1817.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	8.24910924439345	8.55253070609236	7.99151271600684	8.2543149396718	8.76151124589124	8.24110465850563	0.22067262171678	0.413699111235308	0.785359020041643
Merged-chr4-32574714-3	chr4	32574214	32575214	+	762.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	B3|SINE|B2	-3052.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.93225267613861	5.01117522430411	5.30556728714625	4.83698671295701	4.89438181553611	5.05875256078492	-0.33262004046048	0.388215345186073	0.768191594174986
Merged-chr17-35814324-1	chr17	35813824	35814824	+	639.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7389.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	5.45388910763976	5.18344275674532	5.711363293325	5.68855226857984	5.85534845585484	5.84593391155735	0.642582326137542	0.0597706713716509	0.316494719580777
Merged-chr11-21237248-3	chr11	21236765	21237765	+	770.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1767.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	5.43143238035934	5.51094111499237	5.58835904042733	5.75583052128515	6.09729724288788	5.81029764474625	0.729722077920269	0.0234450030406769	0.179400181301373
Merged-chr13-37621275-2	chr13	37620775	37621775	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204763.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.8789172611703	5.7751385556514	5.92512263308579	5.7987913051589	5.98370713749355	5.84136290792714	0.0462084810280689	0.878351650574315	0.971848664619312
Merged-chr17-46247018-2	chr17	46246518	46247518	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009085, intron 2 of 8)	intron (NM_009085, intron 2 of 8)	1027.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	2.71183061404006	2.70845842825608	2.9727347308525	2.91470780179495	2.8500037751235	2.92810606571584	0.501613002250133	0.482334859386138	0.825550117860779
Merged-chr1-54810459-5	chr1	54810043	54811043	+	941.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	115844.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.63215243433702	6.40562864781524	6.24582147526409	5.23923730146736	5.29044614385584	5.52758885084943	-1.95806049330702	8.20124890694512e-10	9.15985931609516e-08
Merged-chr16-17530264-2	chr16	17529764	17530764	+	783.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026909, exon 3 of 5)	exon (NM_026909, exon 3 of 5)	788.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	7.05407546889742	7.3861776058085	7.27731254656921	6.89652197085998	6.80341697797874	6.53496957831991	-0.738629526424197	0.00528055022903341	0.0635228709072649
Merged-chr11-113751163-8	chr11	113750633	113751633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	27.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	7.21880607191357	7.30815548279836	7.42471598992179	7.28740499602329	7.4746495886179	7.26252687983524	0.0523873960636636	0.824319813117541	0.958538023027357
Merged-chr5-4104517-4	chr5	4104015	4105015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020010, exon 1 of 10)	5' UTR (NM_020010, exon 1 of 10)	182.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	5.56638929518339	5.9350968590508	5.6797533241915	5.59711793837821	5.49774526310292	5.39210729946458	-0.444653196183343	0.182539229441995	0.565398543501872
Merged-chr11-87424680-2	chr11	87424180	87425180	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	B1_Mus1|SINE|Alu	-2911.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.55490309386626	4.38568695774795	4.7184588307559	4.40507248687857	4.7010173525608	4.88934499600174	0.295398801768894	0.502219958878561	0.836366262631032
Merged-chr4-141858238-2	chr4	141857689	141858689	+	734.5	f0_balb.idr|f1_c57bl6.idr	TTS (NM_025994)	TTS (NM_025994)	-11830.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	7.10510729013332	6.9858517109681	6.75425979021818	7.24442278943674	7.2851590231113	6.95175914821353	0.320486102058086	0.218060326832512	0.61221998431284
Merged-chr11-120617931-4	chr11	120617445	120618445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	0.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	6.80999146758394	6.93930281719567	6.49487806842652	6.6465933337855	6.56193931617907	6.22718967173423	-0.428060000294352	0.140458488389853	0.500760820920022
Merged-chr3-103130484-4	chr3	103129970	103130970	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177857, intron 1 of 18)	intron (NM_177857, intron 1 of 18)	2914.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	4.17789652057341	3.94064376128264	4.08013005790449	3.68640418149189	3.27131547909202	3.46982732133001	-2.02615560168289	0.000664650399010988	0.0131551451952679
Merged-chr2-124755047-2	chr2	124754547	124755547	+	978.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101466.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.33373619604683	6.09666047558978	6.33163841353505	6.25374466714101	6.24348064749123	6.33418205841577	0.033723420335435	0.904082711489942	0.978001719440647
Merged-chr3-95433639-4	chr3	95433132	95434132	+	964.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-758.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	8.85947419094703	9.37414107954847	8.32547797740993	8.80699441140177	9.30475543659201	8.53929698855612	-0.00307800945492493	0.9924857555998	0.998523796268552
Merged-chr1-91094475-2	chr1	91093986	91094986	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41042.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.78054558558041	4.99557886677844	5.20403287032301	5.0009267512059	4.96968034086213	5.23652061951121	0.151934794858221	0.695255006080943	0.919230570201314
Merged-chr2-167887893-6	chr2	167887371	167888371	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44456.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.75926437660306	5.5357432771997	6.05089644153647	5.79052767604582	5.94800570095055	5.78884997273611	0.11343242824511	0.729405933961104	0.930622521015005
Merged-chr19-34599486-4	chr19	34598978	34599978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110517)	promoter-TSS (NM_001110517)	-51.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	4.3984012080363	4.71825666466273	4.66559045991994	4.96666193449644	5.38441969024925	5.40615407445146	1.45963864942873	0.000388699317738136	0.00860183319956246
Merged-chr9-66125787-2	chr9	66125287	66126287	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	-824.0	NM_001359210	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	5.76988548633417	5.74275706391468	6.04548055638447	6.15980546372904	6.72483883685434	6.33347174958418	0.995574649913812	0.00178871299569433	0.0283549687456152
Merged-chr3-89887850-3	chr3	89887487	89888487	+	627.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 3 of 9)	intron (NM_010559, intron 3 of 9)	25209.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	3.35260685716322	3.26498215775062	3.32222523092583	3.06911798449509	3.09773826093107	3.16594121616399	-0.869978107506752	0.168804972275769	0.545438812408496
Merged-chr13-41355727-2	chr13	41355227	41356227	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	3274.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.14638532723668	3.09116985779752	2.92156703409838	3.09790198048005	3.04984758990704	3.17660529561671	0.196068717374448	0.767682049368401	0.942671231130219
Merged-chr4-88706849-2	chr4	88706349	88707349	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15581.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	6.57229292031297	6.81613194362936	6.60391795837332	6.45927091122465	6.72237520915489	6.83393570910353	0.00887618553789165	0.974042318236363	0.99422005073929
Merged-chr7-19131575-4	chr7	19131065	19132065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175530, intron 1 of 1)	intron (NM_175530, intron 1 of 1)	11706.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	4.37326486712653	4.54839357277718	4.69290762790711	4.7028381899656	4.69858568722706	4.75834883011962	0.436002216985901	0.294147249658985	0.69079067341099
Merged-chr13-60738104-4	chr13	60737593	60738593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	48271.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.6746058275542	6.46600172397286	6.45743436436873	6.27666045394781	6.66657708706633	6.58710780783774	-0.0252953295594468	0.928394933534316	0.983802612059568
Merged-chr9-99498496-2	chr9	99497996	99498996	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	28075.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	7.24078041439558	7.28229017416229	6.77853681471781	7.15941119602693	7.41993993921167	7.08863575975283	0.159541980811623	0.558674475279274	0.864744077984264
Merged-chr2-126707277-4	chr2	126706774	126707774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252580)	promoter-TSS (NM_001252580)	-54.0	NM_001252580	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	7.71862117292799	8.14027003829846	7.97209135463302	7.90490715402904	7.81211992573267	7.67156602037059	-0.219676544229372	0.355599013456844	0.742472851181279
Merged-chr2-155592008-2	chr2	155591508	155592508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008180, intron 1 of 12)	intron (NM_008180, intron 1 of 12)	802.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	5.99548414506786	6.22617283133306	6.25992670314813	6.22762757282218	6.36523892478137	6.31982193453668	0.243789934252456	0.389228707209418	0.769015431167891
Merged-chr9-5300228-4	chr9	5299748	5300748	+	887.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1731.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	6.38532207623432	6.1748345436369	5.89212455842933	6.48851209725975	6.6768131061539	6.05686769126037	0.442857340004502	0.175032074430136	0.554737139071484
Merged-chr15-64088558-4	chr15	64088046	64089046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28098.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.9513312444189	6.97891210675292	7.14724824004451	6.18697041580596	6.86552786248525	6.54728606253479	-0.700957068155292	0.0194345835598835	0.158369682582586
Merged-chr11-32564375-2	chr11	32563865	32564865	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	31099.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.9925629978379	6.79809084460341	6.64680873027562	6.75904740837922	6.84160894036372	6.36827666429342	-0.220939356740424	0.436048424539887	0.799451274848915
Merged-chr12-99561451-4	chr12	99560941	99561941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2400.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	6.84997097348552	6.65600627439226	6.74762004393916	6.71535857243616	7.3476814244799	6.65826996023895	0.321874187119266	0.291245657668812	0.688982485432452
Merged-chr10-121373145-4	chr10	121372654	121373654	+	908.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 2 of 13)	MTD|LTR|ERVL-MaLR	8064.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	5.84412361307453	5.89115499969211	5.88726479633751	6.06052987656785	6.27684139987876	5.97307462803313	0.428050581665687	0.149751785419698	0.516223009447192
Merged-chr7-90129472-4	chr7	90128967	90129967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	7.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	8.24049680860421	8.52211118058467	8.06832965365068	8.12295228966133	8.43138939951024	7.84529042804	-0.184244334072241	0.481196920301152	0.824953741430059
Merged-chr9-7867616-2	chr9	7867116	7868116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	MMERGLN-int|LTR|ERV1	5554.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	6.13736277893344	5.89768432176962	6.0583556685083	5.54496221636469	5.9445128194737	5.65044419365933	-0.524074569788486	0.104794333620426	0.431983644181703
Merged-chr8-8143186-4	chr8	8142704	8143704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	517569.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.80117754675338	3.7354889191499	3.82605970899489	4.27992390187701	4.0698107055857	4.44062254774723	1.42204884029288	0.00516269074345841	0.0625294281487173
Merged-chr2-158028455-7	chr2	158027985	158028985	+	969.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291136)	promoter-TSS (NM_001291136)	-12.0	NM_001291134	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	7.83581914746529	8.01715577360389	7.99028796122888	8.00594733140881	8.0443448490558	7.81739208251394	0.0217491004879153	0.920912932793914	0.982463724790289
Merged-chr19-7482057-2	chr19	7481603	7482603	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003934, intron 1 of 8)	intron (NM_001003934, intron 1 of 8)	1188.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	4.25596392356366	4.23521518192762	4.4866059906017	4.18955450308141	4.1346041480353	4.55102260412284	-0.081760868826154	0.863001333190214	0.968149570765519
Merged-chr15-66776299-2	chr15	66775799	66776799	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 41 of 47)	intron (NM_009375, intron 41 of 47)	55530.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	2.62165938336669	2.75006554981358	2.97369010399343	2.86154609676502	2.66796324550962	2.81071696600767	-0.0210633146952061	0.977364342503218	0.994771164142869
Merged-chr9-66543016-4	chr9	66542582	66543582	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144937, intron 6 of 14)	intron (NM_144937, intron 6 of 14)	-28489.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	4.08370182526512	3.79179723272937	4.44996359573881	3.86206360682568	3.92613324283188	4.05890370328136	-0.519926335118055	0.332646810385652	0.723716858669256
Merged-chr6-6004973-3	chr6	6004501	6005501	+	881.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010063, intron 14 of 16)	intron (NM_010063, intron 14 of 16)	-27608.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	4.20151659353837	4.13118226866404	3.86708481182834	3.75841298222221	3.62969671602834	3.98747787996833	-0.902862367854336	0.0895001569199923	0.397460832795159
Merged-chr6-122339765-7	chr6	122339300	122340300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-143.0	NR_073364	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	5.78690992185272	5.19901936215304	5.32802654313454	5.58470290844701	4.98367204755216	5.32856606798905	-0.291292239865723	0.470578342579712	0.819523993651913
Merged-chr3-88043075-4	chr3	88042581	88043581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110809)	promoter-TSS (NM_001110809)	-25.0	NM_025663	66614.0	Mm.46029	NM_025663	ENSMUSG00000028069	Gpatch4	2610029K21Rik|Gpatc4	G patch domain containing 4	protein-coding	4.70931378596281	4.59542194872071	4.97057950986232	4.73523084098042	4.34007026681454	4.75512991847593	-0.341877008429455	0.435429584459063	0.799027463227912
Merged-chr4-139116439-4	chr4	139115943	139116943	+	752.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	14594.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	3.82769712353084	3.68836533513635	3.7097476579469	3.52257312884702	3.62320971382634	3.50797117641243	-0.648678360547228	0.242341209480464	0.639459864224344
Merged-chr16-17131606-4	chr16	17131084	17132084	+	934.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022324, intron 2 of 2)	CpG	799.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	6.10036240072066	5.93718988004862	5.7245644759707	6.12397500195005	5.87509427384681	5.41846790031358	-0.154127607954886	0.661201272757896	0.906299831450979
Merged-chr1-190928575-4	chr1	190928054	190929054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	49.0	NM_021421	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	8.20769844866277	8.4962392497372	8.08232133391859	8.27997995722253	8.2317777556333	7.65617223437108	-0.258740889150659	0.334481852952551	0.724988043983324
Merged-chr15-79691749-2	chr15	79691249	79692249	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	RSINE1|SINE|B4	853.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	4.99225803141736	5.12711546661482	5.08093275106875	5.20091606464977	5.24226110916898	5.30751374716314	0.372914514756662	0.292260932286916	0.68951252554772
Merged-chr13-12932142-2	chr13	12931642	12932642	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR46A|LTR|ERVK	73188.0	NM_031191	18811.0	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	2.6404967831402	2.499269313068	2.78812943573578	2.44712066187276	2.57393642197816	2.80207492301413	-0.178406736337932	0.821776966628432	1
Merged-chr19-40660885-1	chr19	40660385	40661385	+	772.0	f0_balb.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1115.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.21173192535125	8.24831404615876	7.96415350295458	8.24050028345975	8.51151121856289	8.34660054008997	0.309681496320495	0.16335033630325	0.537171670676237
Merged-chr8-36094191-2	chr8	36093694	36094694	+	926.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	-634.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	2.98020011492212	2.95672954973313	3.20393860611271	2.80727330615191	3.01090012983843	2.6696927682905	-0.97227567005615	0.201583091573156	0.591109595560303
Merged-chr2-170220582-2	chr2	170220082	170221082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77907.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.57199896047339	5.29316638178251	5.48960683088776	6.18042292978315	6.19067632082209	5.72798526661066	1.09553826692293	0.00100310857907692	0.0180624667058715
Merged-chr5-90903718-4	chr5	90903199	90904199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-200.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	6.27075885034489	5.87468481182007	6.03024147528786	6.08400879602849	5.57791351085918	5.85424108030961	-0.384612085064025	0.247178228934091	0.644145276280485
Merged-chr10-88504654-4	chr10	88504145	88505145	+	882.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-675.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	5.59863244593533	5.54359471258466	5.30926798874166	5.4279540020017	5.48327420412644	5.34082113119579	-0.144795217768117	0.667424595459187	0.908729013673458
Merged-chr8-3226675-1	chr8	3226175	3227175	+	705.0	f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	52942.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.20792684896176	3.15034795539853	3.22782472195261	3.15978547772318	2.86198824179218	3.3535478423592	-0.261429884360968	0.700539434558315	0.920919335036368
Merged-chr10-118093950-3	chr10	118093435	118094435	+	759.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47852.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.1408797649788	4.31977776006471	4.49977346294628	4.97242814543872	4.93881623235261	5.0504012089749	1.60544533079083	0.000146703370246786	0.00390062286826691
Merged-chr10-81132106-2	chr10	81131606	81132606	+	665.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4165.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	2.64343908467153	2.66797507211803	2.54502452652105	2.80504021553127	2.74577237840557	2.87275613996267	0.984966351253437	0.188833898631369	1
Merged-chr1-134083048-4	chr1	134082573	134083573	+	842.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3918.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	5.26355047235142	5.37218657424575	5.60352587664125	5.44124682988173	4.9807806793444	5.50612080641221	-0.186818004535813	0.620130697778671	0.890026802452616
Merged-chr14-72564135-4	chr14	72563625	72564625	+	923.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	145878.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.68401075029888	3.89920534901263	3.96980020959759	4.04220073107868	3.74318116872743	4.25861040590169	0.513440346013387	0.341186891833232	0.730686899066382
Merged-chr6-24666438-3	chr6	24665920	24666920	+	835.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	3.69872782770821	3.6738224385047	3.69372796844282	3.46109769121027	3.35426066622438	3.85989052067259	-0.427046839479378	0.466844569813988	0.817656036143015
Merged-chr11-87074123-4	chr11	87073615	87074615	+	894.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025638)	promoter-TSS (NM_025638)	22.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	5.39941116672211	5.52376568933115	5.50701403291413	5.32193746648364	4.95594751186	4.94563702057238	-0.780818927100566	0.0318682246347906	0.216461937673224
Merged-chr15-96712226-4	chr15	96711700	96712700	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12472.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	5.39193074589062	5.19945292225869	5.27962208024023	5.62952057637539	5.412350473375	5.46693729064232	0.412100387613071	0.225306180231848	0.620134188241595
Merged-chr6-39226065-4	chr6	39225563	39226563	+	891.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19290.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.2994467413668	6.48254938637062	6.1360640925268	6.25091010406167	6.09004437311221	5.55397884402844	-0.519451958903615	0.122297734003519	0.467779583548445
Merged-chr3-68798600-3	chr3	68798068	68799068	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	37073.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	3.78889983605553	4.05359140167884	3.78144257259993	3.10442563720392	3.03598719046441	3.09618532756947	-3.60341417741741	1.74278041525611e-06	8.79934907722269e-05
Merged-chr10-21200546-1	chr10	21200046	21201046	+	703.0	f0_balb.idr	Intergenic	Intergenic	13602.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	3.22508138565593	3.11557571352277	3.10216494631989	3.15074198823465	3.12319075840106	3.17443036586435	-0.0118462515251185	0.98515283614354	0.996873682039026
Merged-chr12-102377926-3	chr12	102377396	102378396	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61917.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.6609529429705	4.44250818444775	4.81271902517259	4.54182632813365	4.40124880295991	4.35604533664177	-0.499280069654887	0.253508193280932	0.650896916687683
Merged-chr11-51821727-2	chr11	51821227	51822227	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 10 of 12)	intron (NM_001357588, intron 10 of 12)	35754.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	2.55650177985478	2.48495799438664	2.78817017221302	2.45093930796525	2.47053244032472	2.62512875137942	-0.570709840256865	0.472142426465811	1
Merged-chr9-65205639-3	chr9	65205110	65206110	+	898.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9080.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	5.53621052205332	6.19298803515905	5.74328544009683	5.57773045366027	5.78744763648012	5.29017273725972	-0.510577266886753	0.174529629415289	0.553840868173881
Merged-chr15-80024959-5	chr15	80024398	80025398	+	700.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10090.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.01810844617481	3.71185172837817	3.64920735195206	3.12377482597408	3.00643510653666	3.05943242563671	-3.29624309926319	7.56103207905289e-06	0.000314569178616916
Merged-chr2-105904588-4	chr2	105904099	105905099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028260)	promoter-TSS (NM_028260)	-35.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	5.77695459243238	6.09403807601234	5.98696674468332	6.13954067663589	6.1855173010132	6.11514061754032	0.325911539385771	0.270068051151497	0.667076985193509
Merged-chr7-139399366-2	chr7	139398866	139399866	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	-1128.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	2.44516512332326	2.3079018250889	2.52220947036527	2.49170761093053	2.20690989441026	2.33793679620745	-0.488167519612127	0.565789663580573	1
Merged-chr12-55447722-2	chr12	55447222	55448222	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	44925.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.59643218268338	4.61023821253627	4.31054824008293	4.5027178543505	4.3569675629724	4.18324983912653	-0.410614010540982	0.366174017931778	0.751274672875721
Merged-chr19-47730777-4	chr19	47730270	47731270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-986.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	7.22415354131672	7.52351343776899	7.16482140671494	6.87914686983515	7.04189121266571	7.25795519209907	-0.384010706815171	0.140452010540489	0.500760820920022
Merged-chr5-112324750-4	chr5	112324258	112325258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1611.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	8.01550640369363	7.89431750275368	7.26675594829789	7.62719600061325	7.70012012781079	7.1680435169699	-0.357039617627006	0.233278792239222	0.629682827928185
Merged-chr11-75460591-4	chr11	75460071	75461071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-968.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	9.14422305661709	9.21959906708244	8.77459275252573	8.81772631429462	9.31264945605897	8.75855290396898	-0.0953929529701785	0.708974296700904	0.923861312746116
Merged-chr2-27025246-2	chr2	27024746	27025746	+	866.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172659, exon 4 of 10)	exon (NM_172659, exon 4 of 10)	2752.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	3.44048993109668	3.46908289666054	3.73078188252064	3.75065178221664	3.78035609466796	3.47746877636976	0.478994765554382	0.406259265241757	0.780621211487071
Merged-chr18-38441853-3	chr18	38441368	38442368	+	688.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	22961.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.89004410110118	3.876403957428	3.92618100844269	4.47228623903434	4.40928003326621	4.41929324453161	1.52670002383559	0.00126518218454538	0.0216211294334877
Merged-chr7-73606965-4	chr7	73606460	73607460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48565.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.91909925888243	5.85118747642141	5.65474357003555	6.08482658901171	6.11609375000928	5.71800456983402	0.308896556035387	0.330406188867188	0.721886788700559
Merged-chr4-98924233-4	chr4	98923711	98924711	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146144, exon 1 of 9)	5' UTR (NM_146144, exon 1 of 9)	401.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	6.59497774545206	6.69759211058787	6.8241205720766	6.92200417098279	6.82760603231169	6.89678529016614	0.277333553346973	0.269301837524292	0.666438561847887
Merged-chr6-125149421-3	chr6	125148927	125149927	+	929.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	4203.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	6.59655760732364	6.45036220660541	5.82371747231188	5.70519924618052	5.72890488937211	5.80585345546771	-1.03115218111971	0.00225649102963262	0.033860794516442
Merged-chr7-110552504-3	chr7	110552007	110553007	+	617.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	62413.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	3.78798055707717	3.67024897514314	3.68839287095043	3.66635300126672	3.54386725272615	3.75826312606917	-0.222913844543728	0.681980778090335	0.914908045004202
Merged-chr5-139383793-2	chr5	139383293	139384293	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	3154.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.02578846703362	7.19617340143496	7.23166352300117	6.79947271689646	6.8547928784613	6.61730761337123	-0.585400692203273	0.0199627183087239	0.161204777797187
Merged-chr1-64603582-2	chr1	64603082	64604082	+	807.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	13586.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.72285267747959	4.79625439682841	4.42541986462343	4.56844351472576	4.58662041932787	4.96347015413047	0.096648190955139	0.824530831830977	0.958596193929081
Merged-chr5-25100347-1	chr5	25099847	25100847	+	603.0	f0_balb.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	295.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	6.19236904422248	6.13607948317262	6.29219148763112	5.34020944871979	4.97565693337163	5.41150910361309	-1.78865605646744	8.14629653224735e-08	5.95115927879927e-06
Merged-chr6-135011575-4	chr6	135011074	135012074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026360)	promoter-TSS (NM_026360)	-38.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	6.27517371390374	6.58281633909196	6.07638990118269	6.35964405344681	6.60659033894414	6.18213172158253	0.108828464034002	0.725998988607803	0.929743505822386
Merged-chr13-101909897-2	chr13	101909397	101910397	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-141680.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.75212721968862	6.74472789477347	6.49489203163376	6.54670219099182	6.50939299132659	6.36367595158311	-0.31503421190678	0.23822521046332	0.634880639044005
Merged-chr11-3535970-2	chr11	3535470	3536470	+	845.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159284, intron 3 of 21)	CpG	3322.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	5.21561448715527	5.07640605571575	5.71606366146456	4.92032266108323	4.68417678484235	5.40537110057185	-0.672873872893562	0.124437058101341	0.472038237086681
Merged-chr5-99476849-4	chr5	99476327	99477327	+	906.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-223900.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.86349805921297	5.19554769804814	4.95810758187928	4.49653523831183	4.3426865025562	4.1045162223572	-1.63549241526609	0.000294695826268091	0.00686808207709997
Merged-chr2-152739553-8	chr2	152739067	152740067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3316.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.40748929756686	5.95874784460615	6.00071871584628	6.3750069559778	6.08089435546511	6.27896424675724	0.169677317414838	0.585779568886766	0.875131338300747
Merged-chr5-137601158-4	chr5	137600660	137601660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030037)	promoter-TSS (NM_030037)	-101.0	NM_030037	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	7.89152500750434	8.0623597810443	7.85924549029759	7.75036570996744	8.01302923003161	7.64223977123647	-0.176947483555729	0.448942668686732	0.807468537975475
Merged-chr4-128723505-2	chr4	128723005	128724005	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 8 of 14)	intron (NM_018774, intron 8 of 14)	-4066.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.64104390421368	4.61861620855074	4.732844250186	4.71461949603347	4.69380732194841	4.76020424658984	0.141192159246588	0.723616951277329	0.929080851011554
Merged-chr1-84986396-1	chr1	84985896	84986896	+	668.666687	f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51313.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	2.35945848927635	2.15720606722448	2.3648640873291	2.03723141392816	2.05640808891377	2.24707162356625	-1.35835654365654	0.141951510482133	1
Merged-chr9-77827803-2	chr9	77827303	77828303	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73268.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.2946110818199	5.473263761674	5.04974048639198	5.34637057116787	5.48924558417816	5.53498836441165	0.31369876182901	0.37750615957783	0.75996933176866
Merged-chr7-79883716-1	chr7	79883216	79884216	+	708.0	f0_balb.idr	intron (NM_009682, intron 4 of 5)	intron (NM_009682, intron 4 of 5)	-35506.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	5.41128404327353	4.99786653224595	5.25678989756179	5.02618444162944	4.7347805393995	5.3198850864364	-0.410343338330984	0.311002039567523	0.706234859132538
Merged-chr7-5012856-2	chr7	5012356	5013356	+	825.214233	f1_balb.idr|f1_c57bl6.idr	exon (NM_011813, exon 2 of 3)	exon (NM_011813, exon 2 of 3)	386.0	NM_001110330	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	2.94802488097823	3.06837986871172	3.10932522157354	2.91822774636862	3.11153170733642	2.94425946890183	-0.19196055274275	0.777393213832576	0.945093216103975
Merged-chr11-83636777-2	chr11	83636277	83637277	+	929.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12601.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	2.61789203120243	2.83595064438193	2.77555900947953	2.59950323784361	2.53621008056932	2.72667828731544	-0.708178798808442	0.35156574410679	1
Merged-chr15-25828647-4	chr15	25828128	25829128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14670.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	6.22245669156656	5.98487161130698	5.94134949943876	6.28916714548394	5.98199355022628	5.58968013821204	-0.111146458768605	0.742060104146681	0.935102057855142
Merged-chr5-30973875-4	chr5	30973371	30974371	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053085, exon 3 of 3)	3' UTR (NM_053085, exon 3 of 3)	5194.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	4.03723066930234	3.75440959921796	3.91078177833303	4.59776764912687	4.28400978121343	4.27857202753806	1.38682689046797	0.00545632352608059	0.0651657482356988
Merged-chr11-4988262-3	chr11	4987763	4988763	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	1439.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	5.01673431599676	5.23797274359593	5.15223351350362	5.04123902427965	5.00715186619285	5.18344076515188	-0.140043947546598	0.700976089042294	0.92108550339573
Merged-chr6-134540327-2	chr6	134539827	134540827	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	26586.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	7.05336401194522	7.38354406695208	6.74250259563163	7.3591108378566	7.66337784438088	7.00570621294852	0.422258393305372	0.167196579671693	0.542841690952394
Merged-chr1-138328469-2	chr1	138327969	138328969	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54731.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.22951671229273	4.99997836619291	5.30208807957072	5.62426104558538	5.36781580016619	5.39638667804764	0.579186834717528	0.101783809913852	0.425710869100299
Merged-chr13-21468587-4	chr13	21468079	21469079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025719)	promoter-TSS (NM_025719)	-78.0	NM_025719	66707.0	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	3.73026242495249	3.54283696484598	3.74548618715092	3.45433712239212	3.13020079246352	3.39182169607941	-1.31558504998239	0.0319574268361458	0.216893439819088
Merged-chr4-103341414-1	chr4	103340914	103341914	+	814.5	f0_balb.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	27568.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	5.67162553598665	5.64548479325392	6.03518123972226	5.26815493402837	5.3730855027198	5.6618677824536	-0.655479730027665	0.0587605270820804	0.313701138037068
Merged-chr18-46598426-4	chr18	46597921	46598921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025698)	promoter-TSS (NM_025698)	717.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	8.67782132569084	8.94101225898977	8.48836665658347	8.78963658572806	9.26470884427143	8.66618010850452	0.301830628841876	0.243631017736523	0.640851317416008
Merged-chr12-75713011-2	chr12	75712511	75713511	+	708.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	22718.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	4.32880158834107	4.72345163021331	4.74725280578879	4.42884000818948	4.46533225960904	4.8817351623479	-0.0285997491026561	0.950023509514669	0.988384895514575
Merged-chr14-55560007-4	chr14	55559515	55560515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133734)	promoter-TSS (NM_133734)	-14.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	8.89521316266241	9.28585524611164	8.64428885143149	8.98358633708795	9.36221614852442	8.65765928777072	0.0891237871508236	0.749920909561754	0.937463855381525
Merged-chr2-27289206-4	chr2	27288700	27289700	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-41897.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.34065147551652	2.83407697595121	3.14622582414635	3.08156087719481	2.84841192485121	3.10243683369729	-0.497808189355952	0.487174588606099	0.828352892507347
Merged-chr8-35556270-4	chr8	35555772	35556772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-31526.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.7995787887053	5.20407388202748	5.39704402315625	5.22627732315694	5.8083538642407	5.86441472981929	0.994199701031073	0.0137587714419773	0.125316542774575
Merged-chr5-149185030-4	chr5	149184509	149185509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115151, intron 1 of 8)	CpG	449.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	6.24488583414631	5.99926137985061	6.40671687680448	6.39280602789717	6.52018709688667	6.31525173984501	0.331166953958996	0.251555546767518	0.649016586630852
Merged-chr16-91826933-2	chr16	91826433	91827433	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	97562.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.49222313227419	3.43086189945403	3.50565482889471	3.50583426846696	3.42777706946582	3.72941204292474	0.281142180252471	0.625950816160748	0.892768520930812
Merged-chr14-76081795-5	chr14	76081324	76082324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	28991.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	5.84268622310206	5.84653236178629	6.01863739850936	6.28301833592094	6.41341794902938	6.01010696479005	0.615809440809473	0.0398711450605321	0.248490617796177
Merged-chr10-83652609-3	chr10	83652138	83653138	+	861.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1a_Mm|LTR|ERVK	-3974.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	4.62028271316545	4.42822536542164	4.22631233092479	4.21809077705118	4.1666315904218	4.14927285784261	-0.705563683076676	0.128955305316957	0.480223462442415
Merged-chr6-122946951-4	chr6	122946393	122947393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-5622.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	6.63125568025261	6.72555518142756	6.64774485484645	6.73524513573998	6.86121707344032	6.5696315998373	0.104991795629098	0.685516839443884	0.916283576052925
Merged-chr1-9545318-4	chr1	9544827	9545827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021511)	promoter-TSS (NM_021511)	-81.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	6.77799369084888	6.78655549421651	6.51245513856172	6.73992970989534	6.4794409005217	6.64155300319492	-0.136364226979379	0.61098568772323	0.885849400663435
Merged-chr6-3345448-3	chr6	3344927	3345927	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54144.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	4.41419182277553	4.921775237029	4.63111746795303	6.11279528049029	6.32513721194762	5.38860506174955	2.62971382304374	3.11281939173288e-09	3.15482918328026e-07
Merged-chr12-112628085-2	chr12	112627585	112628585	+	977.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	8038.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	4.91948025687784	4.84612468839448	4.9048092392916	4.82407007718923	4.54171358524319	4.74515985500711	-0.429242085368733	0.280769867190776	0.678846264691369
Merged-chr4-55655526-4	chr4	55655028	55656028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123053.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.37330970503075	2.23243035815846	2.60040832046328	2.2600058145866	2.19643756506936	2.36546855708576	-0.88225585065214	0.309100176784574	1
Merged-chr6-87038033-3	chr6	87037518	87038518	+	880.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4828.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	4.59095959418162	4.05810608147504	4.30518173951781	4.90044758530492	4.92181446299507	4.64416799077842	1.19116632302215	0.00983013711159431	0.0992773454037553
Merged-chr3-84675860-3	chr3	84675358	84676358	+	940.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	9666.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.0118837147205	2.9010508471067	3.07316597513708	2.99924073045171	2.57542615540889	2.84672868103226	-0.879717332985662	0.24370511187036	0.64086208327192
Merged-chr8-3466953-2	chr8	3466453	3467453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026951, intron 1 of 4)	intron (NM_026951, intron 1 of 4)	695.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	3.63670251944198	3.83461994437402	3.84951599548501	3.86360340800566	3.54975900730022	3.86963695338307	-0.0417045069422698	0.939368759349055	0.986657355818179
Merged-chr17-87256450-3	chr17	87255952	87256952	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 4 of 4)	intron (NM_176808, intron 4 of 4)	9495.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	7.72896859999002	7.84603335246709	7.4264514866229	6.96893530434307	7.16067810899185	7.05013131949891	-0.916791327266674	0.000219292964676558	0.00539690298870365
Merged-chr3-36863663-1	chr3	36863163	36864163	+	1000.0	f0_balb.idr	intron (NM_172679, intron 1 of 85)	intron (NM_172679, intron 1 of 85)	557.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	7.16570885522537	7.22728700871401	6.65970481362823	7.10735738348267	7.20457402749475	7.08349618374913	0.121700398199447	0.654669402199995	0.903878958900373
Merged-chr15-73637729-3	chr15	73637223	73638223	+	844.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12979.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.57635256037707	3.80030382929393	3.97789329583729	4.02229100388334	3.60104843676533	3.90429075178049	0.194016154026504	0.728807558523937	0.930478966998914
Merged-chr1-16687552-2	chr1	16687049	16688049	+	824.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-907.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	6.29113558538826	6.44728325890299	6.52178808195433	6.38555996864851	6.72840318438763	6.66346726799557	0.296855951864797	0.283769099173995	0.681458604983399
Merged-chr3-79527774-2	chr3	79527274	79528274	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39905.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.0436768182849	4.27574832818654	4.11244487829385	4.84413482667539	4.37888296302911	4.02477549083544	0.824308811088966	0.112787453370393	0.448540764710779
Merged-chr4-119976790-5	chr4	119976341	119977341	+	964.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	162163.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.7808939902744	4.24014292791487	4.23511494984946	4.93623958043019	4.32605577027098	4.25608818315403	0.234324898683055	0.654103366849126	0.9036765781494
Merged-chr18-74268883-2	chr18	74268383	74269383	+	645.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357422, intron 1 of 14)	intron (NM_001357422, intron 1 of 14)	708.0	NM_001357422	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	6.17709843389835	6.47405819534772	6.62244218829419	6.62331286933369	6.41967045569483	6.51449981462554	0.145157983423392	0.610216322962685	0.885459076104827
Merged-chr4-109464126-1	chr4	109463626	109464626	+	571.0	f1_balb.idr	intron (NM_013876, intron 1 of 2)	intron (NM_013876, intron 1 of 2)	12379.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	2.70063898446194	2.53203914032102	2.50028441052148	2.630253860815	2.77368378339457	2.82819111163927	0.88861894461575	0.251029110258927	1
Merged-chr6-34609578-2	chr6	34609078	34610078	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MLT1B|LTR|ERVL-MaLR	11074.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	3.14232459892395	3.00095233721976	3.31711280502082	2.8595831141577	2.94094482665848	3.17227654434193	-0.731369182810574	0.287805974112213	0.68523977034248
Merged-chr4-6376126-4	chr4	6375623	6376623	+	924.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	10443.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	6.36971282965339	6.62252480243333	6.36005475255499	6.5712620143556	6.58081896933816	6.29886316618733	0.058393761257907	0.834558052755461	0.961319929864283
Merged-chr7-38214773-3	chr7	38214271	38215271	+	811.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	13223.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	2.99543304056109	2.70098358107628	3.15265557906083	2.74202105199401	2.4536542492652	2.76210731288418	-1.61512561267773	0.0471152126474092	0.274823877600114
Merged-chr2-35132235-4	chr2	35131744	35132744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290635)	promoter-TSS (NM_001290635)	10.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	6.71489991157761	7.14278529078239	6.99175921802326	6.6278227531087	6.97428154395467	6.80919134348776	-0.225228916359982	0.413714913205633	0.785359020041643
Merged-chr15-102399023-3	chr15	102398531	102399531	+	561.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7285.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	6.17010155687923	6.19761460770239	6.06447970903963	5.97168999773547	6.02862857768924	6.28964236895436	-0.0934012252792419	0.74876573204199	0.937087780077821
Merged-chr4-35950138-3	chr4	35949633	35950633	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	MLT1G1|LTR|ERVL-MaLR	-104929.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	2.86728631265195	3.14579180074069	3.11685314935315	2.72008700359168	2.93281720080759	2.95710646383871	-0.824087094033429	0.251344489776636	0.648833216107931
Merged-chr14-121798503-4	chr14	121797949	121798949	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-715.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	4.70676334708768	5.02250104789966	4.29017894959267	4.28860713638035	4.41208112562912	4.09948427819385	-1.0822653523713	0.0291803159407912	0.205200523893095
Merged-chr2-173737498-4	chr2	173737018	173738018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019806)	promoter-TSS (NM_019806)	-53.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	7.99265237010525	7.78924110006511	7.32327639315264	8.12463906460539	7.86980863040445	7.54932095853308	0.192234743514934	0.501242800984686	0.835523069455156
Merged-chr17-12171292-4	chr17	12170717	12171717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51933.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	4.05736738060845	3.89101564525839	4.03680587936441	4.08556650614853	4.30650232626531	4.19873488846695	0.607041459489135	0.208862038511054	0.599958314648662
Merged-chr9-85361238-2	chr9	85360738	85361738	+	971.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34088.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.89793154716745	4.08935017830699	3.83439572326478	3.67987111338121	3.58152658451079	3.80181051762348	-0.868958504467665	0.103940636015791	0.429882849586243
Merged-chr5-115531491-2	chr5	115530938	115531938	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	24762.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.29035308773042	5.26521582184854	5.56189280859939	5.83443123553974	5.58576958243084	5.3570000991377	0.466351215291562	0.184302781183888	0.567896082682157
Merged-chr7-19676896-4	chr7	19676404	19677404	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277944, intron 1 of 4)	intron (NM_001277944, intron 1 of 4)	1037.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	5.92334024536413	5.83569649621276	5.963826845905	5.70733809758659	5.66472834070847	6.02440575316102	-0.195097609803561	0.532164879442419	0.851971173271146
Merged-chr11-35768702-2	chr11	35768156	35769156	+	838.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-839.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	3.79746762345842	3.77627017531189	3.95250147033606	3.91636313708429	3.96973151872656	3.65754911063994	0.077317769738289	0.884020184997267	0.973466734537782
Merged-chr7-16844413-2	chr7	16843913	16844913	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	1348.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	3.16261227404568	2.92943245660228	3.2343527706077	3.11293497118117	2.90606473850365	3.25062172581911	-0.088651604684894	0.896389508772915	0.975806926657291
Merged-chr11-54648768-4	chr11	54648272	54649272	+	907.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 16 of 28)	intron (NM_001252494, intron 16 of 28)	52626.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	7.00771880594347	7.13259845497447	6.69041112739997	7.09630362700837	7.15181586524307	6.51131396698313	-0.00240984221123377	0.99361181504131	0.998724987388047
Merged-chr4-133751726-4	chr4	133751229	133752229	+	957.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	1882.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	6.6156617655605	6.72790797359057	6.55730522864454	6.56688599923707	6.70112332761034	6.39382049018004	-0.110140502632989	0.68038435469053	0.914217125833247
Merged-chr11-69395770-2	chr11	69395268	69396268	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-23.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	8.4165869268024	8.28879639142338	8.10262196382428	8.31831530131273	8.47614665011361	8.15836831044367	0.0688830943671053	0.759220278528724	0.940311236380535
Merged-chr1-39916314-4	chr1	39915818	39916818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	ORR1B2-int|LTR|ERVL-MaLR	15405.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	5.31657742102714	5.14910534650826	5.42847697821518	5.63642712529209	5.49837462025414	5.63021626262846	0.563370202249589	0.0941212298238924	0.408642801522903
Merged-chr8-11458353-4	chr8	11457833	11458833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-19596.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.40315493942007	8.35602927500405	7.9775839148737	8.1777789612451	8.49511024785112	7.77833142773961	-0.0994222886214045	0.716740707265233	0.926809750393356
Merged-chr9-120708340-1	chr9	120707840	120708840	+	580.0	f0_balb.idr	Intergenic	Intergenic	131009.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.02015720350155	3.0008012291976	2.85425531877589	2.45537421928927	2.35025339343101	2.53979326522833	-3.80272077347193	0.000232607377381213	0.00565929668337309
Merged-chr2-45090382-2	chr2	45089882	45090882	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	19895.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.45594415076285	7.35488529727244	7.1093978126173	7.23947253691842	7.51817361337125	7.60438194393276	0.205846151462902	0.413498926066806	0.785137582664904
Merged-chr2-152729752-5	chr2	152729245	152730245	+	841.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6506.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.38634032033026	3.24270026789357	3.21190122979973	3.33283139435924	3.82779885588454	3.67784883246312	1.29242498892846	0.0397073250419324	0.247785143399513
Merged-chr2-145371810-2	chr2	145371310	145372310	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	129199.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	3.64499526642674	3.47889258307536	3.47357536649204	3.75798081150594	3.81947120845745	3.54631108323163	0.629101984064631	0.266501978696664	0.664166899200562
Merged-chr7-122300780-2	chr7	122300280	122301280	+	844.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	11655.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.86978905644817	3.72837450905301	3.49682313074226	3.42806481396594	3.21365547131129	3.72880657201858	-0.876446708904249	0.158009340419678	0.529527616804567
Merged-chr8-71369255-3	chr8	71368784	71369784	+	733.888916	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145780, exon 8 of 9)	exon (NM_001145780, exon 8 of 9)	-2014.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	3.43150754366811	3.23369375044578	3.56606972355958	3.24816093771245	3.38534048283791	3.4807500316607	-0.149231127767753	0.806940069501665	0.954399610026228
Merged-chr1-191611881-2	chr1	191611366	191612366	+	775.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001306203, exon 12 of 19)	exon (NM_001306203, exon 12 of 19)	36230.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	3.11269201446887	2.78171998716744	2.74252240301171	2.4578772728087	2.26080686100033	2.48478498920952	-3.6218238252987	0.000581549698316882	0.011839879446428
Merged-chr7-24461665-4	chr7	24461187	24462187	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-796.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	3.87284449215337	3.87333470292666	4.3693885117026	3.77914342242687	3.82574272408728	4.06132115459346	-0.481977194925277	0.371248110144486	0.755436533897021
Merged-chr10-117709501-3	chr10	117709023	117710023	+	673.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1235.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.29574641481785	6.32527883201975	6.24281514556295	6.43019504085956	6.66093771537206	6.32368610303503	0.325942760974965	0.240660609956533	0.637714978289328
Merged-chr2-117959786-2	chr2	117959286	117960286	+	649.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	137858.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	3.16069614542465	3.2354788043959	3.13837490069433	3.60492621768042	3.29351676795872	3.70568388590711	1.40489760388043	0.0274267117423359	0.197415383274765
Merged-chr6-72164511-4	chr6	72163968	72164968	+	963.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41271.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.73365951829529	6.76727581294976	6.90469395669376	7.05831465902479	6.96875445342013	7.1562972676268	0.399081695132422	0.104837947477837	0.432054705729044
Merged-chr11-70489415-1	chr11	70488915	70489915	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-15859.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	8.27386735201662	8.02359161315372	8.02911517744196	7.95290422256846	8.2523980315741	7.93292238697479	-0.0787405304675822	0.73393353875436	0.932325051544019
Merged-chr9-85368551-4	chr9	85368052	85369052	+	845.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41402.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.57725787670649	4.62853995128698	4.63762980019844	4.26429595021236	4.4198536438187	4.36968517746492	-0.649285060279293	0.130864713869499	0.483482422149598
Merged-chr5-114647805-3	chr5	114647307	114648307	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10614.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	4.08975423639738	4.05456792647674	4.31418421022962	4.38390257714905	4.03439800329082	3.79041931190657	-0.15315892088145	0.769972298464959	0.943310056383255
Merged-chr10-80151304-4	chr10	80150808	80151808	+	948.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 2 of 7)	CT-rich|Low_complexity|Low_complexity	1626.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	5.30660355812663	5.59789096917068	5.62350533154685	5.95325472233784	5.97281453319869	6.17184602165382	0.936216032977406	0.00345426770499675	0.0467734267204832
Merged-chr8-39639879-4	chr8	39639424	39640424	+	924.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	2754.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.6165015469008	6.85757584487173	6.54109080433944	6.84621211118932	7.21551307401809	6.56408501273152	0.360755962679331	0.225247893202084	0.620063864646258
Merged-chr15-64313663-2	chr15	64313163	64314163	+	771.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-990.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.41616992798275	4.95847111707189	4.9455345794908	4.63956592834719	4.75094722934785	4.7962209847541	-0.149177050450719	0.731142939109225	0.931320540641251
Merged-chr12-80407919-2	chr12	80407419	80408419	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_177267, intron 1 of 8)	B3A|SINE|B2	-16182.0	NR_028544	100217447.0	Mm.453532	NR_028544	ENSMUSG00000112285	Scarna3b	MBI-100	small Cajal body-specific RNA 3B	ncRNA	3.18125237957796	2.86315576428481	2.99248892906038	3.14542629675825	3.22817843275018	3.12662300901503	0.655688307981276	0.331780198706017	0.723058323983775
Merged-chr4-40854134-4	chr4	40853630	40854630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022305, exon 1 of 6)	5' UTR (NM_022305, exon 1 of 6)	407.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	7.00759883073051	6.80677630906653	6.93255662139974	7.1532611023611	6.95686179597092	6.73393803073806	0.0743394143882923	0.775901626720227	0.944804182096302
Merged-chr4-149790047-4	chr4	149789549	149790549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15782.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.34297851037811	7.09237205273138	7.21305760236887	7.05461580132165	6.92838125527616	7.2819272388926	-0.199535231271685	0.428634370165199	0.795420465213011
Merged-chr17-35980791-3	chr17	35980260	35981260	+	966.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282013)	promoter-TSS (NM_001282013)	805.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	6.62096583189965	6.71416224948177	6.66077744698447	6.52099526806548	6.64413594217816	6.71952985585609	-0.0606514022013702	0.81291867897655	0.955841430155734
Merged-chr2-129308323-7	chr2	129307838	129308838	+	834.780945	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040371)	TTS (NR_040371)	1634.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	8.27130423931858	8.30180439678479	7.94927760235731	8.53229011094694	8.85910515274868	8.39719210547897	0.59523405572351	0.0139514962301382	0.126443317538105
Merged-chr11-47156862-2	chr11	47156362	47157362	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 3 of 7)	B4A|SINE|B4	222440.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	3.91277763220188	3.77023270148464	3.85068598672972	3.61553850490615	3.76780949153369	4.10121689477652	-0.0311918852110938	0.954232954057076	0.989495550016789
Merged-chr3-95231329-2	chr3	95230829	95231829	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	2386.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	6.61078167572745	6.54877386799452	6.69606175670217	6.70184693536927	6.90368837111649	6.95769994098331	0.379434272276958	0.139088247829988	0.49825197337463
Merged-chr2-36244902-4	chr2	36244400	36245400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	14474.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.33767905589879	6.18184339871401	6.28059854262433	6.29108134319557	6.10067751969831	6.21956111909417	-0.109084656883059	0.696430432235497	0.919456498952701
Merged-chr3-9878977-4	chr3	9878485	9879485	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45306.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.67190928542382	4.89260070430868	4.99233556877003	5.17443389359624	5.23858528713413	5.42950146218081	0.905087166093237	0.016381240303615	0.141278010280182
Merged-chr17-73937210-4	chr17	73936699	73937699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	12997.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.81979843769717	7.93789297860779	7.45649350558851	7.73577685092616	7.95536300299321	7.10187448061803	-0.146105282424276	0.630136454923163	0.894613355308
Merged-chr4-59879608-1	chr4	59879108	59880108	+	715.5	f0_balb.idr	intron (NM_172468, intron 4 of 8)	intron (NM_172468, intron 4 of 8)	35448.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.92122541083671	3.91109910411678	4.15585091747344	3.7274885062468	3.7363098417114	3.85309799839541	-0.70612226192206	0.173425214327796	0.552231649526893
Merged-chr7-80424818-1	chr7	80424318	80425318	+	541.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19382.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.68022843673264	3.47173188357161	3.46766274248596	3.39042016681884	3.30185185150579	3.48371515914511	-0.594714888822022	0.312993639403006	0.707613396148954
Merged-chr11-117799412-4	chr11	117798914	117799914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 2 of 5)	intron (NM_029964, intron 2 of 5)	1754.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	4.93698442350414	4.46933644461529	4.47918319612025	4.74449746306132	4.61114462347477	4.45694343476243	-0.0997734786243844	0.823622227285901	0.958451755471188
Merged-chr15-86272907-4	chr15	86272399	86273399	+	981.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	L1M4c|LINE|L1	-4776.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.76712601776365	8.2271230987859	7.44814876829812	7.43946586688756	7.69349519200739	7.47281028478082	-0.461659877241398	0.102098397978677	0.426069687497354
Merged-chr6-134121628-2	chr6	134121249	134122249	+	758.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	86049.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.48670859582299	4.60428361728315	4.20433443522214	4.13049438410037	4.01381950278053	4.17730201433973	-0.948112482455655	0.0447381866925068	0.266698311958024
Merged-chr5-114131181-4	chr5	114130698	114131698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	42.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	7.36498705668409	7.68330434804662	7.15997481033118	7.46673225307017	7.6295897370132	6.74917006888477	-0.116869520100408	0.714506472766303	0.925924007318889
Merged-chr9-101073824-4	chr9	101073348	101074348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-914.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	7.85343645718777	7.63538341121167	7.68458056113278	8.08892339572075	7.86864216267719	7.81976024357913	0.291350417584585	0.199529401590047	0.588071778389935
Merged-chr6-128888944-4	chr6	128888442	128889442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289706, intron 2 of 6)	intron (NM_001289706, intron 2 of 6)	1355.0	NM_001289707	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	7.21296869278586	7.33116558088191	7.02522974374748	7.2655246092944	7.35296011723335	7.13638948586289	0.0850275097593737	0.727416689754781	0.930190693178362
Merged-chr17-81432925-4	chr17	81432429	81433429	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305458.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.28572609546364	3.91637511231571	3.80200688471521	4.06433001696532	4.231656849758	4.08323275886067	0.300468703860562	0.562607651014295	0.865745518569294
Merged-chr7-16043658-4	chr7	16043149	16044149	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28196.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.61929964246948	7.94368486691156	7.74705909612068	7.58288492231185	7.96404986891389	7.63158773500629	-0.0490908165719303	0.842257039135867	0.963002495523594
Merged-chr2-71367733-4	chr2	71367227	71368227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-173.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	7.61930506101858	7.74406675657653	7.70787859079857	7.74307354544556	7.8473034406459	7.89626616712528	0.19904664628448	0.35828773558687	0.744602774931622
Merged-chr16-4678316-4	chr16	4677827	4678827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1393.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	7.46245438133231	7.56246124543017	7.28875966087781	7.8021817577206	8.02947070568644	7.61075204922468	0.562485925205517	0.0215223935216237	0.169602738909676
Merged-chr3-41038689-4	chr3	41038168	41039168	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44378.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	5.59193642600261	5.40011152749868	5.28669662719162	5.97542495729196	5.96929770093731	5.79612802837873	0.879172931562018	0.00661193048052237	0.0749731235959342
Merged-chr12-40460003-4	chr12	40459504	40460504	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13951.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.09662524485081	5.1120319836354	4.90899421501612	5.01083430726591	5.04978910829094	5.11744260887112	0.0151780961415804	0.96703585180638	0.992443230448091
Merged-chr10-68104763-3	chr10	68104253	68105253	+	897.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	125183.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	6.93962781942456	6.44477945953098	6.43644166521554	6.34238834596758	6.20540320385047	6.19281424194324	-0.629135081357442	0.0357147158332164	0.232295010947414
Merged-chr1-43827134-1	chr1	43826634	43827634	+	561.0	f0_balb.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	574.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	6.47131024205842	6.86559529231579	6.64729431091589	6.44693147919357	6.41540827135646	6.59090769666865	-0.309223604576921	0.26265191955739	0.660662685713974
Merged-chr5-141058159-1	chr5	141057659	141058659	+	619.0	f0_balb.idr	Intergenic	Intergenic	-57563.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	3.14488594982659	3.17228267868581	2.98294314218853	3.23428465858764	3.21466244560092	3.17939372556339	0.43806276110977	0.497738701765882	0.833786477221282
Merged-chr3-105928335-4	chr3	105927804	105928804	+	766.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033780, intron 2 of 5)	intron (NM_001033780, intron 2 of 5)	4360.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	3.7366292514021	4.01582590521983	4.05424647013131	3.75140338085954	3.80001755552337	4.16536445382558	-0.0920271076595042	0.863695394810835	0.968269312109804
Merged-chr3-98844090-3	chr3	98843573	98844573	+	820.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15721.0	NM_001304800	15492.0	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	2.96831315959867	3.49615641920852	3.36015431425897	3.22380490658827	2.88107165285956	3.20820952901291	-0.764985301895511	0.280357336572254	0.678217620115832
Merged-chr8-84969553-4	chr8	84969062	84970062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-60.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	5.84130969901121	5.8564738447114	6.40611516201816	6.62066555901162	6.55448079658074	6.58460711165331	0.894968343913406	0.00350675871788211	0.0472229129952314
Merged-chr3-89089990-4	chr3	89089497	89090497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	34.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	7.33631639635538	7.42273419118424	7.04499003048419	7.32544730079398	7.30849841695095	6.99047210580223	-0.0914820994941516	0.722529889864292	0.928821151735982
Merged-chr7-119896029-7	chr7	119895528	119896528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173408)	promoter-TSS (NM_173408)	167.0	NM_001285960	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	8.1715663662506	8.19388172193273	8.03077921706304	8.21786725794763	8.35152222143406	8.08648416079766	0.128303223734096	0.550827225772311	0.86080292597632
Merged-chr7-45340813-4	chr7	45340307	45341307	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 27 of 29)	intron (NM_029741, intron 27 of 29)	5538.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	4.37621576231607	4.15039606105795	4.20386676739896	4.19702615404728	4.19914805349819	4.48616713329685	0.116033665593903	0.80404244741017	0.953557286986578
Merged-chr13-55205255-4	chr13	55204755	55205755	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4527.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	4.44993760231356	4.64478858600227	4.18447329465351	4.5230277036097	4.3426584018598	4.61149745151245	0.0971375971286404	0.832504342310812	0.960616839788396
Merged-chr3-96239133-4	chr3	96238620	96239620	+	927.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	7.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	5.1610551212756	4.82022615226441	5.00972594526021	4.72424447823829	4.43960256611694	4.66429619229526	-0.907999503525512	0.0273231169548877	0.196970387172611
Merged-chr5-36580794-2	chr5	36580224	36581224	+	739.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	1673.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.87035333811062	4.62715811865685	4.92699650453392	5.37331267192562	5.25761721132591	4.66698895352215	0.720072793989026	0.0902361731396282	0.39948322703042
Merged-chr13-119835752-4	chr13	119835257	119836257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	2.90076842068308	2.79425017278537	3.0477835438218	2.97597682433212	2.77023572459613	2.75938335053564	-0.370239206838391	0.606185680461454	0.883895524399136
Merged-chr4-132493255-2	chr4	132492755	132493755	+	782.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144907, exon 10 of 10)	3' UTR (NM_144907, exon 10 of 10)	17201.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.40914479717255	5.46414266542181	5.63046682141334	5.04688565196561	5.56007439666146	5.66648817927602	-0.0939393214390772	0.798848762301089	0.952063885260145
Merged-chr13-49192619-7	chr13	49192124	49193124	+	878.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5077.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	6.85800684852346	6.83203139258605	6.67988555861374	6.90544911469517	6.84878020053412	6.78677015746596	0.0804182467802591	0.746562370924641	0.936300236930265
Merged-chr3-96576381-4	chr3	96575880	96576880	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9579.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	7.81060709521754	7.77960460638948	7.83260508055516	7.63764814772414	8.17086972598104	7.63254612825541	0.0620696871924551	0.808447208639975	0.954683711776353
Merged-chr2-120362877-4	chr2	120362363	120363363	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173734, intron 17 of 19)	intron (NM_173734, intron 17 of 19)	-9726.0	NM_147153	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	4.92527192506014	4.80857450025296	5.23065056226427	4.97444329155105	5.14724292674531	5.07000521047825	0.173850256608202	0.651342430034315	0.902785150139012
Merged-chr11-84879876-4	chr11	84879419	84880419	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	276.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	6.73822953711429	6.91235032963775	7.10343120847146	6.79047132070219	6.76048422361312	6.78232959153819	-0.220052320322272	0.392003410085537	0.770815288458203
Merged-chr5-134679063-2	chr5	134678563	134679563	+	753.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	-815.0	NR_131247	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	4.43951417820166	4.45775364387386	4.58934170050578	4.2514033167409	4.2965869457849	4.411386737037	-0.45316387427895	0.301039286100825	0.697704518489441
Merged-chr10-120166030-4	chr10	120165531	120166531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 7 of 11)	intron (NM_001359184, intron 7 of 11)	35566.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	3.64801724648854	3.45277995996992	3.67937383477321	4.78089503418635	4.33123369222207	4.08717905759	2.59618526408741	4.90755352199188e-06	0.000218017999710571
Merged-chr9-107985869-4	chr9	107985389	107986389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	27.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	6.83288189376525	6.37007877799214	6.69731071363214	6.4851121414135	6.75937605454053	6.34715635778452	-0.148573551307904	0.616566597857274	0.8883991389227
Merged-chr6-124506181-2	chr6	124505681	124506681	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 3 of 5)	(TG)n|Simple_repeat|Simple_repeat	-6440.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	3.21263132474949	3.06981458497474	3.52005648130037	3.23630277546381	3.03825459180306	3.16036951379584	-0.536098972148207	0.417901106997556	0.788425433317899
Merged-chr10-68738428-2	chr10	68737928	68738928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	14682.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.91732162481603	5.27510421542651	4.98261163583879	5.17640856103277	4.92130814771385	5.39563297997139	0.19615826169429	0.619324640347023	0.889749463061948
Merged-chr15-59051272-4	chr15	59050780	59051780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	L1M2|LINE|L1	30746.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.77606841679181	5.47241455043368	5.50080115053958	5.58348595718712	5.71834111568385	5.44248151676453	0.00164184104985361	0.996097019280596	0.998961028701257
Merged-chr5-117493834-2	chr5	117493334	117494334	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	79832.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.97498983621337	4.9963841019213	5.0061681983605	5.12206711613358	5.19823620865725	5.23730252433881	0.407946593331212	0.25521049530985	0.652277764275156
Merged-chr17-57030850-3	chr17	57030331	57031331	+	717.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	676.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	5.67058548373525	5.04260546602479	5.00698837619751	5.57736131564292	4.73175024433428	4.91746651278403	-0.300726348796913	0.521309756053024	0.846961674932344
Merged-chr2-68438095-4	chr2	68437615	68438615	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	Lx8b|LINE|L1	33866.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.11105442701584	3.96117251872377	4.56203719972641	4.50941787127471	4.39411979960034	4.29790614731851	0.480221772922331	0.329106105477558	0.72115269198792
Merged-chr2-152344134-6	chr2	152343625	152344625	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	-65.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	4.6218844632848	4.85168545404775	4.45932002121825	4.76018944068198	4.89612800487033	4.78193935750402	0.349724380038066	0.400150360040003	0.776372018141352
Merged-chr1-171112014-3	chr1	171111546	171112546	+	876.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9615.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	5.88110550122631	5.90448196750432	6.15612414920944	5.93499098403383	6.00219378582816	6.11331814185862	0.0666185405487793	0.823258303190138	0.958260248893634
Merged-chr9-66878325-3	chr9	66877796	66878796	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	B2_Mm1t|SINE|B2	41409.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.16153532432269	7.4573865219388	6.67407565870368	6.35588966302164	6.59021314084756	6.59452180058611	-0.975570734159382	0.0013393607792104	0.0226469278025887
Merged-chr15-78594417-2	chr15	78593904	78594904	+	818.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	3.23070492126497	2.90547041330315	2.83862832555873	2.88915413116263	2.87661354444872	3.1535727095785	-0.150712527997484	0.834294342087511	0.961273502395445
Merged-chr3-89831883-2	chr3	89831383	89832383	+	652.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172530, exon 1 of 6)	exon (NM_172530, exon 1 of 6)	513.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	3.51592282148654	3.59704529049737	3.81938325398101	3.96220726965572	3.5188775039152	3.93606765595146	0.565123276371606	0.324150739271826	0.717287790132387
Merged-chr18-56925618-4	chr18	56925133	56926133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-85.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	5.78362458317673	5.87655029181709	5.93940429757086	5.56466700599286	5.26375506487254	5.29066980930459	-0.904945406832292	0.00597598801698434	0.0695843843992769
Merged-chr13-9231624-4	chr13	9231133	9232133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44892.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.95156234340829	3.85392124603737	4.36006528441817	4.02635037444839	3.85320387474953	3.99289264143921	-0.315185039068708	0.546655331040327	0.858892667633518
Merged-chr5-105716629-2	chr5	105716129	105717129	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	15819.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.31665629711709	2.95121638516755	3.12689131713528	2.72580427151557	2.78096370833622	2.90156917414809	-1.67517793635371	0.0225125531183507	0.174627064404934
Merged-chr9-21529528-2	chr9	21529028	21530028	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_206536, intron 2 of 5)	intron (NM_206536, intron 2 of 5)	3351.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	3.61096960452427	3.18724150452477	3.63027466303982	3.64814980042639	3.67588022107955	3.89580548792909	0.876132836516586	0.147959691344193	0.51323286632348
Merged-chr2-46521024-1	chr2	46520524	46521524	+	568.0	f0_balb.idr	Intergenic	Intergenic	824419.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	2.71530955390734	2.91511514831704	2.94454629450072	2.84252596444305	2.42511366270829	3.01709073960839	-0.368757350648555	0.65695769249174	0.90473577750501
Merged-chr10-99380285-3	chr10	99379782	99380782	+	701.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117051.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.42513352271144	3.55227298453505	3.37673553122369	3.27290224070395	3.34105337694697	3.55503064557311	-0.260364890678525	0.664096650367384	0.90751097049737
Merged-chr18-56470979-4	chr18	56470455	56471455	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 2 of 13)	intron (NM_001360917, intron 2 of 13)	38823.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.15535174160026	3.48226180341144	3.37196481139186	3.0672645232667	3.21240781427085	2.96756943220872	-1.05205213487599	0.12148694427752	0.466267788719735
Merged-chr8-125776995-4	chr8	125776527	125777527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	42824.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.38474107955024	5.59242144386264	5.50948354168653	5.15772919473019	5.07147150309205	5.57157925038147	-0.448871037189224	0.216199070739141	0.60962730956869
Merged-chr9-116108892-3	chr9	116108364	116109364	+	801.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 4 of 6)	L1MA5|LINE|L1	66499.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.1432075430086	4.07905894893693	4.37098271820628	3.8168235991335	3.65559344473639	4.05249171039266	-1.07725031971851	0.0387578501061912	0.244093490132906
Merged-chr10-67966357-4	chr10	67965850	67966850	+	921.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152797, intron 2 of 2)	intron (NR_152797, intron 2 of 2)	7358.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	3.63660477304407	3.60679079519456	3.68502173319421	4.25729804391869	4.03189120392637	4.24450764415477	1.68923077338773	0.0012540699575235	0.0214930284295809
Merged-chr8-53627143-4	chr8	53626611	53627611	+	803.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 1 of 9)	RLTR25B|LTR|ERVK	11954.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	4.5161808212662	4.42677699846192	4.35950934410193	4.47884332741595	4.80289570122456	4.86750471402344	0.692083468449608	0.10913678666622	0.441427850715675
Merged-chr11-106737426-2	chr11	106736926	106737926	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13800.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	5.67021112280863	5.62485809263916	5.47560800747593	5.05174281430283	4.9979111252848	5.39210500548367	-0.897689707867677	0.0110462420405903	0.10782915388473
Merged-chr7-120677936-2	chr7	120677436	120678436	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	316.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	4.83822846769419	4.56661729774601	4.57115345267424	4.80550610970698	4.68963153608249	5.11126230851646	0.457843024886615	0.277255785603808	0.674475901473372
Merged-chr12-3307581-3	chr12	3307092	3308092	+	699.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	2377.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	4.81803210461874	4.90597922232922	4.97111017359499	5.3269465237325	4.9183979112766	5.23562367264711	0.572210488222857	0.137262662756341	0.495027571456897
Merged-chr15-63616964-4	chr15	63616458	63617458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137350.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	7.28668053422714	7.07672498309678	6.79628628281269	6.83768872348814	6.87658760296267	6.38264017636753	-0.532708308841593	0.0682530755830684	0.341765400583571
Merged-chr19-59020997-4	chr19	59020473	59021473	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 9 of 16)	intron (NM_001114312, intron 9 of 16)	55096.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.91811348192072	3.74495835442533	4.28828470198554	3.85040382257305	3.7776664310393	4.14719345244888	-0.201385230474539	0.711880553441907	0.924889808252387
Merged-chr9-103233189-4	chr9	103232688	103233688	+	772.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2902.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	4.29739221614385	4.27577983390112	4.53463438335164	4.19824610655767	4.26230059662288	4.71040150842962	0.0822471722598401	0.862176330798511	0.967996224966109
Merged-chr16-96128893-1	chr16	96128393	96129393	+	556.0	f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-1168.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	3.41657920457054	3.56553443909787	3.24851648188793	3.46496079481533	3.26245846205401	3.49361417683837	-0.0656803709548964	0.914624545999716	0.980912729144991
Merged-chr3-89867086-2	chr3	89866586	89867586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35716.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	2.7360691401681	2.66086245714465	3.06791518958393	2.90496599769383	2.71336613911478	3.24613307457244	0.663428506014671	0.385592170129681	0.766591069902819
Merged-chr16-4790137-4	chr16	4789628	4790628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358080)	promoter-TSS (NM_001358080)	164.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	8.82580412270057	8.96225621832463	8.37943972778815	8.78710491013303	8.62920853647118	8.09284448027137	-0.287569513092043	0.301683337627478	0.698377118776631
Merged-chr17-31059789-2	chr17	31059289	31060289	+	786.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	2095.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	8.20463657669642	8.4712821558522	7.85755444889269	8.17912085278076	8.52357240112383	7.65228620759041	-0.043325842194324	0.886310646227909	0.973765580660617
Merged-chr10-79926482-4	chr10	79925931	79926931	+	799.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-612.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	5.43718897108142	5.50705797894826	5.58638007693475	5.45246520963525	5.84420632839235	5.67553862123281	0.312209823667277	0.348068986482558	0.735982909356061
Merged-chr6-52955515-4	chr6	52955017	52956017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45897.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	4.27762960029198	4.40836536555199	4.49541466150303	4.23570569653897	4.43719993128736	4.43800791779196	-0.0454694809032828	0.918743459517224	0.981830247255695
Merged-chr15-57693960-4	chr15	57693493	57694493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-674.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	8.14929735878644	8.22624038835112	7.58104706482832	7.6346880971975	7.62488693669102	7.03930532354084	-0.793106150963026	0.00757363232975003	0.0827451154009769
Merged-chr16-94601805-4	chr16	94601288	94602288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-9631.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.11883262426269	7.25894361923296	7.04873297357734	7.05406738899491	7.22933178338998	7.33363658540932	0.0874622305443416	0.719658462386684	0.92793360927861
Merged-chr14-99045584-2	chr14	99045084	99046084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175265)	promoter-TSS (NM_175265)	552.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	7.10327571854711	7.2799328831548	6.9403212683243	7.39551791508733	7.30368772649941	6.83011332818036	0.13119640249661	0.634732700270899	0.896354115104213
Merged-chr15-100125137-2	chr15	100124637	100125637	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-29259.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.43291793806549	4.05511249221131	4.14202368073867	3.91324773889208	3.81600791109207	3.91631854513336	-1.01825383254497	0.044156472846725	0.264424022499481
Merged-chr5-139460621-4	chr5	139460119	139461119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028469)	promoter-TSS (NM_028469)	-85.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	5.76291182356997	5.77962194038895	5.30833952376085	5.56234464671388	5.69974655444098	5.33953690043006	-0.175351650426482	0.62056308224808	0.890213289123814
Merged-chr6-113697042-4	chr6	113696533	113697533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033463)	promoter-TSS (NM_001033463)	-17.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	7.71254291112865	7.28268097003889	7.14904243874709	7.43845537397751	6.90239474905892	7.38183799068973	-0.226012263735962	0.440026577287357	0.801567033070239
Merged-chr10-79975291-4	chr10	79974783	79975783	+	944.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130455, intron 3 of 8)	intron (NM_130455, intron 3 of 8)	4559.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	4.93745566009033	4.2764410549163	5.1270700785962	4.60333395188876	4.6333917279338	4.86585562456102	-0.277987570724369	0.559210877198386	0.864901733108576
Merged-chr5-74348548-5	chr5	74348061	74349061	+	913.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	153235.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	2.99152452880025	3.00554466008951	3.20462243867919	4.29058440963039	4.21368780631272	4.20815134294302	6.63269249501553	8.79303833562397e-08	6.37326771629442e-06
Merged-chr4-106981606-4	chr4	106981103	106982103	+	750.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	58418.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	2.95191749613972	3.23148678866948	3.28637998596362	3.07609562748367	3.08592788662563	3.35676813450684	0.0507300089015928	0.93930025026548	0.98664767056858
Merged-chr15-95772493-4	chr15	95771993	95772993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18350.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	4.28540530002634	4.32808338113215	4.07039678317585	3.91004176008581	4.21841171388334	4.49079870237961	-0.0449187393544834	0.928743362458558	0.98388029414287
Merged-chr13-6062451-4	chr13	6061979	6062979	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	200990.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.54952014951693	3.35145204874304	3.68582744653355	3.44100199269898	3.20245606214246	3.65652007773524	-0.343089750205225	0.578641428268001	0.872437129840066
Merged-chr3-9499613-3	chr3	9499112	9500112	+	814.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133218, intron 2 of 8)	L1MC5a|LINE|L1	96534.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	3.88710539041493	3.74841990483446	3.52434211656523	3.75194825132746	3.53812870928733	3.21991313757476	-0.708661146185373	0.267561462622282	0.664793041950336
Merged-chr5-110653469-4	chr5	110652967	110653967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027156)	promoter-TSS (NM_027156)	16.0	NM_027156	69663.0	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	6.61266895899835	6.71848148225095	6.58301552730085	6.53931175693339	6.37503253483471	6.12726364041701	-0.443418402442717	0.110286851544545	0.443685555447395
Merged-chr8-79641372-2	chr8	79640872	79641872	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	intron (NM_001081164, intron 1 of 20)	1696.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	3.31303943533303	3.32847750090525	3.07277355980122	3.4294452211758	3.18602189619672	3.26948223223266	0.194737379013328	0.761001604092606	0.94107870096807
Merged-chr5-96912976-4	chr5	96912470	96913470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8302.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	7.67787551924677	7.76507916322582	7.35165574003376	7.11199978802901	7.12148566104693	7.50320812199743	-0.538553722309601	0.038691180432998	0.243913610233267
Merged-chr16-94250270-4	chr16	94249803	94250803	+	901.90625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	39988.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	5.78488946432047	6.00836915578525	5.67671101305189	5.88728582594838	5.87962704198994	5.68356948466571	-0.0233445854692312	0.940954753059058	0.986888338850358
Merged-chr5-135463077-2	chr5	135462577	135463577	+	668.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-68531.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.57712467113319	6.84716339609657	6.7439916262242	6.67898715696292	6.61828014795405	6.74095439667265	-0.0813550938535298	0.753741745636684	0.938570691167124
Merged-chr12-76404188-4	chr12	76403709	76404709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	33.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	6.73549169260446	6.77884008986932	6.68971826643852	6.96592907506496	6.64767961106007	6.99578082562478	0.207820185558269	0.428074901783184	0.794877517296538
Merged-chr9-99180995-2	chr9	99180495	99181495	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-40784.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.11497909277795	6.94153033378114	6.68086432690994	7.18260718609578	7.14457689393023	6.89966301424059	0.232864347973668	0.379653585446157	0.76201161008233
Merged-chr3-144897404-4	chr3	144896912	144897912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1401.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	5.40088529806005	5.42621952295525	5.56229273462478	5.28961322370255	5.21853027167662	5.09877581177568	-0.495459175514249	0.149711611953025	0.516223009447192
Merged-chr5-105416288-6	chr5	105415789	105416789	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033550, intron 1 of 4)	CpG	514.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	6.43227862600399	6.05287947289145	5.94804585053495	6.15588126590171	5.77097770324313	5.43280224616941	-0.584823769940335	0.103711388359129	0.42934834114604
Merged-chr15-81074700-4	chr15	81074191	81075191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	30356.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.23405176175094	5.96895314062751	6.08575276813677	6.12205407904944	5.80474250236142	6.20881136223859	-0.0957281810000045	0.756258250273909	0.939545863427369
Merged-chr16-4880604-4	chr16	4880100	4881100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	-749.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	8.41737826733068	8.53314022381103	8.22400887512927	8.18304988830488	8.58919143408844	8.34863817270796	-0.0181856731595183	0.937363038618972	0.986057836872162
Merged-chr7-112226799-3	chr7	112226256	112227256	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	920.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	2.56892069482188	2.74622319020112	2.71101742740605	2.42858618932314	2.29546611535092	2.46953950591697	-1.81790559427201	0.0312419517482449	1
Merged-chr17-29401269-2	chr17	29400769	29401769	+	766.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40355.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.27659368350331	2.13904291128738	2.40517792702682	2.07421614848152	2.03834860491133	2.15842760167821	-1.39884886429168	0.128130097396052	1
Merged-chr8-79037811-3	chr8	79037308	79038308	+	740.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9371.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	3.69269000334906	3.3443009936962	3.88510333461542	3.33494627832914	3.46771685462394	3.33786522229911	-0.972185803230491	0.118388047996625	0.45978215625219
Merged-chr7-16256689-2	chr7	16256189	16257189	+	885.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	2649.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	6.6616235637541	6.72330971759236	6.96708413670602	6.29684291932107	6.35556249083586	6.65660582433286	-0.553302193849769	0.046530347075572	0.272943046842735
Merged-chr12-111365072-2	chr12	111364572	111365572	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	L1MB8|LINE|L1	12646.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	4.93829720109151	5.08561159247041	4.97044259836597	5.44431631971685	5.39182743991402	5.10981082811455	0.677205690907569	0.0631599726848901	0.327215927225225
Merged-chr17-81704907-4	chr17	81704399	81705399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33488.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.34105216548508	6.29229412214425	6.48225126724894	6.11816354578249	6.52562814398859	6.45350868512509	0.0199038987631372	0.944878765828269	0.987875414328125
Merged-chr14-77852831-1	chr14	77852331	77853331	+	552.0	f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	22086.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	4.18664854198164	4.43544510924075	3.9798080296771	4.15918335116125	4.04638173631761	4.15046964216344	-0.301660237742012	0.539378831767732	0.85586364792863
Merged-chr4-102759492-6	chr4	102758923	102759923	+	878.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	-712.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.69989013825618	4.86649450188518	4.18220624886237	3.99631339949919	3.75391434755559	3.93452420173308	-2.04431430051122	8.63787585808461e-05	0.0025130782321661
Merged-chr11-97799607-4	chr11	97799100	97800100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	35.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	6.52353146593425	6.38096769634995	6.49267658481377	6.35833962862081	6.45095286886061	6.40667010482533	-0.0941076760724463	0.722925982720429	0.928978644214873
Merged-chr3-41408559-4	chr3	41408068	41409068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84631.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.95108696016527	6.05827903983443	5.295542646426	5.36645571229931	5.29920804062269	4.97880211393288	-1.10877358781102	0.00482704152996643	0.0597724125915421
Merged-chr7-128013298-2	chr7	128012798	128013798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8920.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	3.11840509613854	3.06895731354652	3.36993484579051	3.19311735474158	3.13871947613314	3.33369812042651	0.145771554277681	0.820190415666157	0.957544914010115
Merged-chr2-73040203-4	chr2	73039687	73040687	+	976.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59741.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.76304049651696	5.66633337941362	6.1852841214602	6.25038433301845	6.09789627546369	6.14382011643691	0.49929363067423	0.114030882304066	0.450931448046693
Merged-chr11-76889699-4	chr11	76889204	76890204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-14841.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	5.53992462761117	5.65683202733383	5.47426744976927	5.20096466199974	5.14049247017088	5.50848824377766	-0.55372701284453	0.109610209701305	0.44241796404687
Merged-chr2-12053484-4	chr2	12052994	12053994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247752.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	5.7341833025421	5.783822803975	5.73701384672711	6.11023976824895	5.82366956166017	6.14669942091298	0.481838844176506	0.117715547380715	0.458037711233261
Merged-chr14-13995666-5	chr14	13995223	13996223	+	927.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16768.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	4.55187978689112	4.66062859650264	4.58236792307715	4.86775193512424	4.86244441029735	4.73105985188368	0.528657201476237	0.186255650962674	0.570803258887202
Merged-chr12-91799167-2	chr12	91798667	91799667	+	716.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12731.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	1.55378226790391	1.62802822448849	1.74479913018818	1.42540713776797	1.32511391750009	1.39908823951102	-3.90395063064111	0.00666000377356531	1
Merged-chr2-118901368-4	chr2	118900868	118901868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045523)	promoter-TSS (NM_001045523)	-247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	4.50774954994477	4.47448183169692	4.57073807757671	4.71201092538839	4.38154169853116	4.71502235849834	0.214450015417254	0.618497915798988	0.889443702136265
Merged-chr3-129429591-4	chr3	129429075	129430075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4098.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	5.53930809749436	5.8987315989764	5.61391671085296	5.61723201753057	5.84124922858334	5.64869224980789	0.0244102660456827	0.941025017315915	0.986888338850358
Merged-chr3-31417163-4	chr3	31416681	31417681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106862.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	4.03181000086578	4.0722678667719	4.35851029725664	3.98694662742989	3.50314421229591	3.72782594767282	-1.24676191905677	0.0248403536620266	0.186309369705238
Merged-chr15-12213831-3	chr15	12213308	12214308	+	702.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	8780.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	4.49646556802362	4.0210464409985	4.00700515033599	4.0026658580803	4.14660402199366	4.07731481518004	-0.348799610669973	0.494478304854819	0.832036472279676
Merged-chr16-15862912-1	chr16	15862412	15863412	+	995.3333130000001	f0_balb.idr	exon (NM_029354, exon 1 of 3)	exon (NM_029354, exon 1 of 3)	457.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	6.60901998032683	6.86368706728813	6.59635558752601	6.59252781607735	6.79698778726677	6.68878511057004	-0.00398173819338146	0.988007051531362	0.997268471577753
Merged-chr17-35762816-4	chr17	35762316	35763316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.79593870897394	3.50518676889643	3.31467872554262	3.88486144752762	3.63339429111044	3.84016961816782	0.759993837345645	0.206930777467529	0.597718538515663
Merged-chr16-30940135-2	chr16	30939635	30940635	+	865.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141297.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.73602511977831	3.41889254883305	3.60522916879653	3.69424548769214	3.37495636276544	3.62279435265278	-0.0946753169575739	0.871764313291417	0.970250220039897
Merged-chr10-94357684-3	chr10	94357141	94358141	+	850.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45692.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.29599301115515	8.35493874650316	7.93036786893906	8.47119460217571	8.70169409008173	8.04189270216074	0.319056899264382	0.229654226277098	0.62529675589217
Merged-chr11-61654068-2	chr11	61653568	61654568	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	747.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	2.98801775469683	2.69669072916801	2.9411039958616	3.29471685741279	2.90758704554802	3.35790625258538	1.4430646026819	0.0493624444446212	0.282369742702326
Merged-chr14-52022414-2	chr14	52021914	52022914	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1681.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	6.10569085113897	5.95912782870273	5.97218553365918	6.43537772603848	6.35205009583227	5.58927250251052	0.298759476182094	0.395007039227078	0.772579826044138
Merged-chr15-73725519-6	chr15	73725008	73726008	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166388, exon 1 of 6)	5' UTR (NM_001166388, exon 1 of 6)	578.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	7.02443079165609	7.30202311899177	7.16411399631154	7.34194095563191	7.52354300110133	7.13315111532862	0.27104891578813	0.283675597873228	0.681376161050487
Merged-chr10-61167532-4	chr10	61167022	61168022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4442.0	NM_001017419	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	5.63808101975944	5.4965078708281	5.19355293523421	5.8280487819238	5.8058265102734	5.39822804522187	0.437231579863071	0.219877330811425	0.61423936831415
Merged-chr10-61290721-2	chr10	61290221	61291221	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7115.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	3.24843110615461	3.01104599721344	3.21918882948895	3.34302102579048	3.54587258673015	3.40563322347492	1.12118341891059	0.076110356604962	0.363130192223949
Merged-chr13-92722609-3	chr13	92722114	92723114	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72204.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	3.27705174269895	3.19416174382789	3.24184486752229	4.06594668838784	3.78907033736424	3.92769147080278	2.61002445694879	2.82448295247466e-05	0.000978432878890555
Merged-chr10-128082170-4	chr10	128081659	128082659	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1148.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	4.30329794655562	4.35809110394812	4.37458562160822	4.27213458927131	4.45500229524288	4.56495380268787	0.229044615455207	0.604747933776914	0.883226183914895
Merged-chr19-29513851-2	chr19	29513351	29514351	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 2 of 3)	intron (NR_015567, intron 2 of 3)	8136.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.41856028263508	3.44798331967672	3.85388070852439	3.47262390361598	3.51568152592562	3.78243906496613	0.042352201707965	0.943287318949394	0.987377570608805
Merged-chr12-59061388-4	chr12	59060868	59061868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030057, exon 1 of 6)	5' UTR (NM_030057, exon 1 of 6)	104.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	7.67670514596558	8.24690292322323	7.58124085449051	7.87800753623532	7.88492389454111	7.69567942690835	-0.077422691123552	0.775435057995791	0.944666768607333
Merged-chr9-63031577-4	chr9	63031078	63032078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50699.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.73200659011165	4.94806237159782	5.055728944104	4.71544034345892	4.95910246820958	5.21317997665424	0.126887151258327	0.753846986970706	0.938570691167124
Merged-chr9-110408195-4	chr9	110407662	110408662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081043)	promoter-TSS (NM_001081043)	48.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	7.90268120642982	8.0667114739818	7.47086622507437	7.7686715847289	7.92307432203969	7.31988457534281	-0.201599615812485	0.477744070231729	0.823367525497911
Merged-chr1-152530986-2	chr1	152530486	152531486	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	94231.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.15840236179176	6.03888717655172	6.2970789660795	6.33042469555457	6.43952124827065	6.37590113234251	0.372818530097042	0.179470880258215	0.561047939456947
Merged-chr7-120835605-4	chr7	120835087	120836087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7244.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	6.81065370559544	6.79561550946963	6.78440087610287	6.96574641363532	7.3437123881372	7.09531454538977	0.541208679568787	0.0335780694001241	0.223843086540653
Merged-chr19-21274950-4	chr19	21274400	21275400	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2622.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	7.49037193337823	7.66647809508686	6.92176350585086	6.92680769380033	7.10297369883241	6.68622573469978	-0.722413749518281	0.0160074111207587	0.138920632368282
Merged-chr2-91083698-2	chr2	91083198	91084198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12980.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	8.24957452414943	8.11105025929352	8.1698171212666	8.2975715643942	8.41021916562925	8.23862717690056	0.200326652166345	0.333894773753245	0.724640488640063
Merged-chr5-121382938-4	chr5	121382453	121383453	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2456.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	6.16976951725987	6.14974113205874	5.78929513843512	5.98900731898381	6.25230277508207	5.979709633529	0.0506034865249569	0.870414049467658	0.970065609722504
Merged-chr7-110863108-4	chr7	110862605	110863605	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053247)	promoter-TSS (NM_053247)	-152.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	3.17959872895968	3.23285663671904	3.36699706481352	3.14940890059648	3.06401223470609	3.21766704769669	-0.498671954618878	0.43113325238977	0.796688090876857
Merged-chr2-13543794-4	chr2	13543294	13544294	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	870.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	7.40743646369843	7.41019696965849	6.96035736973309	7.3506981977095	7.72377762500159	7.28376173814803	0.281063221501377	0.304430979156559	0.7009544776595
Merged-chr8-57513274-2	chr8	57512774	57513774	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 3 of 4)	intron (NM_008252, intron 3 of 4)	1431.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	4.46110587966532	4.60881966766415	4.54599850900331	4.59894797948709	4.60826210183663	4.69256779061636	0.219149032816091	0.596175709951828	0.8798867145239
Merged-chr1-74702098-2	chr1	74701598	74702598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11437.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	3.7178235348186	3.89797658805406	3.66877614672355	4.01067776975902	3.84033842296785	3.68482702306257	0.272044995831086	0.614325257707071	0.887435546271868
Merged-chr9-46110810-4	chr9	46110297	46111297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	97977.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.64480740139336	5.26127204958103	5.15309867454962	5.4836133246527	5.64063386250771	5.2867167023434	0.20834282284691	0.572493931500258	0.869840399318717
Merged-chr11-34778438-4	chr11	34777936	34778936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	5469.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	5.02053760624426	4.80999932886325	4.80286660346165	4.73515332478849	4.62618982774994	5.23451044919942	-0.0124178592433802	0.976746931117876	0.994751152290718
Merged-chr7-127122019-3	chr7	127121483	127122483	+	930.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133686)	promoter-TSS (NM_133686)	46.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	4.58911737786872	4.75102670765693	4.88686679869791	5.37141293711724	5.00013045262154	5.09388848505313	0.922596281370046	0.0193626489399734	0.158057777260052
Merged-chr6-86472402-4	chr6	86471920	86472920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131125, exon 5 of 5)	non-coding (NR_131125, exon 5 of 5)	8410.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	8.60583826426747	8.46131369333644	7.96245636964259	8.43654922221253	8.52791475945495	7.95282125448724	-0.0588481588391222	0.832153864813508	0.960611438244586
Merged-chr5-16442350-2	chr5	16441850	16442850	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111145.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	2.27631827492248	2.41599431314863	2.27152412544395	2.45982603289545	2.30955472021279	2.66605214184408	0.979720030799847	0.251136168696518	1
Merged-chr19-41360698-2	chr19	41360198	41361198	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	RMER1B|Other|Other	24372.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.72887675405822	4.09007180994366	4.26893601468347	4.12217428845273	4.02801406275247	4.37633034138312	0.383544461223031	0.463011603569751	0.815604460584161
Merged-chr11-86683938-4	chr11	86683430	86684430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-53.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	7.40754153237652	7.56869819498691	7.35858786765751	7.39457355606255	7.64965837227556	7.08214309629026	-0.0625822697155233	0.811224587821818	0.955145794362684
Merged-chr1-152527499-2	chr1	152526999	152527999	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	97718.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.00672377654916	5.71241713065415	5.62165853579141	5.84776994896601	5.83453842823538	5.5673529078395	-0.0616983887242455	0.850657835004331	0.964981271430729
Merged-chr4-138216378-4	chr4	138215876	138216876	+	899.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122896)	promoter-TSS (NM_001122896)	-236.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	6.47191594861939	6.12593564566153	6.29705500697487	6.54999828612698	6.570599162038	6.4530785776401	0.362207920545912	0.19281673294321	0.579829949936344
Merged-chr7-97270494-1	chr7	97269994	97270994	+	770.0	f0_balb.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	55470.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	3.9487833577123	3.75627126175559	4.03250399019988	3.80781052491134	3.69574776369044	4.09994015008191	-0.136872901875155	0.797491826349759	0.951799370596145
Merged-chr11-75512397-2	chr11	75511897	75512897	+	703.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001029938, exon 7 of 8)	exon (NM_001029938, exon 7 of 8)	-1144.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	3.44445054569601	3.19717866621093	3.72858417096197	3.55778433515422	3.33831966528182	3.93389274190001	0.554672246358988	0.389148765343198	0.769015431167891
Merged-chr11-17528053-3	chr11	17527553	17528553	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	270365.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	3.72533235707344	3.69061160324408	3.31571892464735	3.41213004190389	3.21846379548422	3.61486479242547	-0.651413845986745	0.298673379125465	0.695427199902635
Merged-chr14-120285301-4	chr14	120284797	120285797	+	901.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	9628.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.79896402129805	3.97093439863533	3.92598245911828	4.09264867998817	4.00838081141141	4.2671451083451	0.658294182632557	0.187199207886347	0.572128204607461
Merged-chr4-6367680-4	chr4	6367166	6368166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1986.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.71165183219238	7.67264812459127	7.10248702072658	7.79654080193428	7.84456503879022	7.41075472861034	0.246057953251322	0.380195969444925	0.762352609238579
Merged-chr15-62043948-4	chr15	62043462	62044462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4705.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.61625925504479	6.66638694431806	6.58215532945879	7.1984675715351	7.21929268011326	6.98429130874926	0.801138899594076	0.00125717793001706	0.021524127819107
Merged-chr7-104465266-4	chr7	104464783	104465783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-90.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	7.55293450250518	7.51454128917037	7.24567319681525	7.54579938998009	7.65812178013535	7.36183974327552	0.120547284736724	0.618051703668256	0.889100855667229
Merged-chr15-89196569-4	chr15	89196067	89197067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-93.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	6.79319723830408	6.85704996811301	7.00463804901682	6.74277604817477	6.80244197935239	7.06249042095678	-0.0207569395889687	0.935794284561645	0.985953563515988
Merged-chr14-30951368-4	chr14	30950854	30951854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011849)	promoter-TSS (NM_011849)	-23.0	NM_001308328	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	7.09763723788846	7.28945865754515	6.94516996757954	7.1534639928919	6.9925289690924	6.98925761678073	-0.118739887989943	0.635514500735248	0.896573254953858
Merged-chr3-146784424-4	chr3	146783922	146784922	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-3006.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	5.50107491226361	4.971344500022	5.13253799016727	5.18590090445117	5.04199107914106	4.94388007397185	-0.33499552752464	0.391728906923176	0.770712638022881
Merged-chr6-124414549-4	chr6	124414054	124415054	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360570, intron 1 of 14)	intron (NM_001360570, intron 1 of 14)	309.0	NM_001277330	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	6.3721920638348	6.1168333760425	6.00827091988149	6.5266908406997	6.05320656306204	5.81211802204187	-0.0124479156086568	0.970578946643645	0.993515974169602
Merged-chr2-129360870-3	chr2	129360405	129361405	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8997.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	6.28140130265892	6.0657196541695	6.1627522670413	5.52614860361364	5.45252173670897	5.79503938465122	-1.04668841243419	0.000788769403188116	0.0150221845961265
Merged-chr11-110430004-4	chr11	110429528	110430528	+	918.9652710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	30926.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.39398415393455	6.09746144326118	5.97735423187496	7.06741848747616	7.10761538883625	6.57650679622949	1.22712282155628	5.6786290105555e-05	0.00175327407313656
Merged-chr7-101619668-2	chr7	101619168	101620168	+	729.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38507.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	5.65962073522659	5.7261208860404	5.56134359986127	6.29161198044523	6.45990010440349	6.00238392905398	1.07834023911354	0.000536556592726709	0.011092124464001
Merged-chr4-149486017-3	chr4	149485505	149486505	+	879.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	739.0	NM_026963	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	5.2220838623604	5.65115899339287	5.60648561462632	5.22062835546889	5.21179889667488	5.29559336930477	-0.519877571706588	0.144905262877184	0.507803112933149
Merged-chr11-101095468-4	chr11	101094944	101095944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-9.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	6.22721042642846	6.56361449491447	6.67665797995425	6.40674382190795	6.66511945584333	6.64077338227868	0.128919742655986	0.652974079327554	0.903046151766902
Merged-chr3-54601734-2	chr3	54601235	54602235	+	656.666626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91080.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	2.73730519422755	2.79367278635985	2.91816434170891	3.72373976029959	3.51164770307113	3.37280851647672	3.82284545444724	5.49791438585132e-06	0.000240015981226609
Merged-chr13-78236768-4	chr13	78236203	78237203	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045195)	TTS (NR_045195)	-37830.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	5.95212687073238	6.25266633824778	6.11872101232769	6.13283194784417	6.33538201528672	5.78834398196682	0.00945087482909223	0.97633423290963	0.994694354430036
Merged-chr2-144204888-4	chr2	144204402	144205402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15612.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	3.7592662120874	3.68937071790658	3.70950770104133	3.91909188779051	3.64812209097102	3.55917588909336	0.00226483212269857	0.996717664757171	0.999143236020465
Merged-chr8-80949889-2	chr8	80949389	80950389	+	967.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	65017.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	6.3562528868213	6.56514873861506	6.82079245544674	6.87550841666713	6.70907637765551	6.93442395709264	0.39826489213048	0.148482033152915	0.514056886706346
Merged-chr10-57828863-4	chr10	57828334	57829334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	34290.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.45605755770831	5.4799119755239	6.04376476449033	5.51187231143471	5.55166672236151	5.72441633616752	-0.149475893216017	0.676011833324563	0.912421384593547
Merged-chr7-102266718-4	chr7	102266191	102267191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1133.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	7.36763688169165	7.39046989594406	7.30006841013551	7.64817408763528	7.99580574937608	6.90622456614182	0.367739467227949	0.249409040229668	0.646337575549666
Merged-chr1-86431144-2	chr1	86430644	86431644	+	974.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	4815.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.4202982099547	3.51669729056978	3.49043572108623	3.27796048566311	3.41305947002965	3.85482425224515	0.197316995663013	0.748574447258768	0.937061013186316
Merged-chr6-86496730-2	chr6	86496230	86497230	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8503.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	3.98888084944133	3.93535110693717	4.22886812203859	3.94689983420103	3.90312216354594	3.92892368929121	-0.369698488595491	0.460520467035497	0.814520074002194
Merged-chr1-97660979-6	chr1	97660484	97661484	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	692.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	7.02715840629492	7.13605055321278	7.07416422955794	7.35034290461543	7.01559051016193	7.21837255282658	0.177280525827165	0.471865593961441	0.820369595325449
Merged-chr2-101810814-3	chr2	101810332	101811332	+	846.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-13125.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.41414276610919	3.64259412762661	3.71118383549592	3.89339361499605	3.70883213045279	3.92852724490632	0.84073023548481	0.129420837785251	0.481228589205873
Merged-chr3-52049634-2	chr3	52049134	52050134	+	646.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	ID_B1|SINE|B4	55372.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	2.94339635764156	2.83240195568082	2.98292879722693	2.84497746614249	2.7498552949692	3.22085386610807	0.132813183911753	0.85410846452012	0.965921728767399
Merged-chr18-70532211-4	chr18	70531684	70532684	+	897.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	5.20795944601531	5.24281668710597	5.31529999971957	5.5841003572651	5.72164233432745	5.34745375803528	0.62139800838556	0.0695291883145721	0.345032686548037
Merged-chr2-25547014-4	chr2	25546514	25547514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290413)	promoter-TSS (NM_001290413)	-74.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	7.80857373896726	7.32866327553883	7.35769437591248	7.85028389173049	7.62414731199396	7.24810757292887	0.118191313220598	0.676004276844543	0.912421384593547
Merged-chr18-12128641-4	chr18	12128118	12129118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024182)	promoter-TSS (NM_024182)	-232.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	6.82064749479135	6.98168368769367	7.07583345579377	7.07516737200038	7.25586430006645	7.21857241658215	0.345553235499501	0.157784209828055	0.529315325672301
Merged-chr6-57514515-3	chr6	57514018	57515018	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 5 of 6)	intron (NM_175523, intron 5 of 6)	20908.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	4.09429827033553	4.12617818233437	4.37032457218262	4.01105782847129	4.34102421192506	4.22159286302918	0.0244507496098686	0.95961642436287	0.990242512723989
Merged-chr5-124483414-4	chr5	124482904	124483904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029532, intron 1 of 1)	CpG	249.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	8.92191777730139	8.85440516659062	8.46648652631509	8.92459981202228	8.99977982606553	8.44519574269259	0.0698172924609803	0.783893620153349	0.947360539866523
Merged-chr3-27985614-2	chr3	27985114	27986114	+	825.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	1443.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.38647429309101	4.36361282674763	4.42480382361602	4.48312615558716	4.63349111302705	4.90818881031354	0.711099132424268	0.101562920051746	0.425149289843186
Merged-chr10-21851982-1	chr10	21851482	21852482	+	702.0	f1_balb.idr	Intergenic	Intergenic	-30202.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.27230003869572	3.50091237222319	3.49982017950404	3.61084762518843	3.48754110914618	3.67476017574311	0.591743515370606	0.310081847787077	0.705656335571635
Merged-chr5-69557720-6	chr5	69557218	69558218	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310631, intron 1 of 14)	intron (NM_001310631, intron 1 of 14)	794.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	6.20695595119632	6.10116184521498	5.97042588696421	6.35848633239782	6.56137084876283	5.82251617845742	0.332513150113557	0.313370414411342	0.707942154711635
Merged-chr4-105254508-4	chr4	105253979	105254979	+	908.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97132.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.13579207708773	5.9982845337807	5.95931387702523	6.26665952139076	6.44212374757146	6.06843266499615	0.409535028909484	0.164458657509798	0.539048135747077
Merged-chr12-85472947-1	chr12	85472447	85473447	+	912.0	f0_c57.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-943.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.50462629752585	8.4266618477207	8.12093230992353	8.17954874168478	8.26211161712613	7.81293382997718	-0.363585230984619	0.136943867369169	0.494395405937775
Merged-chr10-93083434-4	chr10	93082937	93083937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1841.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	3.11941132190844	3.13546202566904	3.09199517902435	3.45369835326261	3.45709102300072	3.51003967379639	1.45778685439024	0.0194330617329009	0.158369682582586
Merged-chr15-76331210-4	chr15	76330702	76331702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010331)	promoter-TSS (NM_010331)	-92.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	6.46871961367251	6.56903944361892	6.39617588395643	6.46225162506103	6.31592751617469	6.56297688520963	-0.0677898870291321	0.80182702774451	0.953086016975963
Merged-chr16-17561324-3	chr16	17560835	17561835	+	963.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011028)	promoter-TSS (NM_011028)	-88.0	NM_001145435	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	4.96121522057109	5.19661932496881	4.35914101830537	3.59581590437498	3.38700970421263	3.84736806325444	-4.22561219008035	2.12512959056997e-10	2.63136581803789e-08
Merged-chr11-120733785-4	chr11	120733245	120734245	+	923.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1724.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	4.5406047746472	4.05564713123972	4.59296859490405	4.07617603322373	4.23284808152724	4.29290864612964	-0.558206416201868	0.256483079303479	0.653552886970565
Merged-chr12-87386669-2	chr12	87386169	87387169	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	1686.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	5.12982899852648	5.10725570768284	5.14125815697162	5.2143524448264	5.17356080717957	5.103274282198	0.0873910243819564	0.8046288724622	0.953651704501661
Merged-chr16-32868363-4	chr16	32867871	32868871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001200038)	promoter-TSS (NM_001200038)	-5.0	NM_172615	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	5.97776560457325	5.91695824090194	5.83530797250203	5.95918252659455	6.3234793737376	5.89736383964638	0.299932209613213	0.335863906943647	0.725979061409716
Merged-chr6-70792875-4	chr6	70792374	70793374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-699.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	6.90908736102307	7.11986273666123	6.76989846056772	7.06354989194296	7.29151841499833	6.66000339608271	0.147339959879238	0.609109768730202	0.885053989692691
Merged-chr17-27840019-4	chr17	27839518	27840518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-69.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	7.78392811924734	8.09556340099381	7.70704399830831	7.79643317706984	8.15704407967133	7.66079951510122	0.0272419944348941	0.916015743278524	0.981201223155309
Merged-chr13-111802153-2	chr13	111801653	111802653	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	6840.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.0650757124431	2.95364098453235	3.10566951284845	2.99948674198096	2.75141913096784	3.17719011543212	-0.278760181075234	0.691918996898924	0.918541547639936
Merged-chr14-20765909-6	chr14	20765416	20766416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039138, exon 7 of 20)	exon (NM_001039138, exon 7 of 20)	28172.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	4.53817641833097	4.63012455777047	4.72888690032776	4.65840277252393	4.16994868587747	4.33913964792163	-0.567287013369224	0.211583786561505	0.603945120913907
Merged-chr3-54807817-4	chr3	54807319	54808319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133231)	promoter-TSS (NM_133231)	-28.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	6.9611897117543	7.16165725640349	7.0211865627841	6.84477555399037	6.74737801652978	6.79489393505394	-0.396956407012583	0.106476107311353	0.435652102062224
Merged-chr9-32519290-2	chr9	32518790	32519790	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	22162.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.07336938085549	5.78243541446005	6.04733724479911	5.99478852561843	6.15479627302797	6.15078004570433	0.22870320119631	0.443759800451717	0.803884349333946
Merged-chr17-26660469-2	chr17	26659969	26660969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15927.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	2.44429412517634	2.47028932906169	2.40180886300612	2.51472449467784	2.36683261211731	2.60297042484696	0.325283691956353	0.685488782542248	1
Merged-chr9-62972349-4	chr9	62971887	62972887	+	934.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	8492.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.66134888693041	6.71727482561929	6.55214945505852	7.04350565608071	7.16827344645064	6.66473985132413	0.524340587481058	0.0544452838625391	0.29969005848873
Merged-chr10-67283717-3	chr10	67283216	67284216	+	816.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	1565.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.74155811168991	4.82514992786247	4.42935866774728	4.70701113461303	4.83561993500449	4.54458097722602	0.0529076982970232	0.90162612528607	0.977318811218526
Merged-chr3-107279042-4	chr3	107278559	107279559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026774, exon 1 of 4)	exon (NM_026774, exon 1 of 4)	201.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	5.94345629271887	6.42702379868465	6.16880004379874	6.20546897518734	6.48649707670845	6.02583428903589	0.110870887067477	0.728455437394877	0.930478966998914
Merged-chr5-123015594-2	chr5	123015094	123016094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	CpG	520.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	7.19977213214092	7.25849189489766	7.22174943529257	7.23372045332998	7.13508983446458	7.20800158924012	-0.0547032594139804	0.812071405349049	0.955468494621222
Merged-chr2-102942743-2	chr2	102942243	102943243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41078.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.07518322304105	8.26634513142946	7.85637789775478	7.99429014230692	8.21832831445674	7.96022598603094	-0.0222591160042873	0.924470756281137	0.982960139621551
Merged-chr2-154314063-4	chr2	154313574	154314574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025574, exon 7 of 15)	exon (NM_001025574, exon 7 of 15)	6830.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	5.62241274481918	5.57601109957601	4.9715321319726	5.21517983851501	5.14659792823592	4.83096813591969	-0.703704434115069	0.082920425093367	0.380987557121549
Merged-chr7-19092857-2	chr7	19092357	19093357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 14 of 14)	intron (NM_032418, intron 14 of 14)	-1687.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	3.30219418736795	2.99375359231935	3.56997271293526	3.48194983832391	3.25116014471312	3.37783509124755	0.265351604119713	0.68863276735709	0.9172299553909
Merged-chr7-100946656-3	chr7	100946185	100947185	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-14524.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	4.89194313302618	5.09901377367923	5.21480924697336	4.88322093740892	4.63971124883358	5.24771635088201	-0.295176926164849	0.475208458608464	0.821758256966855
Merged-chr2-58184330-4	chr2	58183812	58184812	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20338.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	4.55086697759922	4.67443131516599	5.00157757852573	4.25498033008711	4.17708899911706	4.53678684960073	-1.06333966712932	0.0198512646257278	0.160622040300902
Merged-chr7-127777704-3	chr7	127777215	127778215	+	982.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 1 of 18)	CpG	326.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	6.89166873509363	6.75544553015714	6.69511290557596	6.98134042691321	6.45998777162172	6.62079430459082	-0.127037602992497	0.652880078586643	0.903027303548785
Merged-chr15-6404169-2	chr15	6403669	6404669	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	17421.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.75596041409397	4.48488088167645	4.16161411049918	4.1940384419277	4.44763445785991	4.50899922015511	-0.279135712664759	0.560668576473503	0.865261302076164
Merged-chr11-69755425-2	chr11	69754925	69755925	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	3208.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	3.99070939017919	3.75282327338762	3.808380830793	3.93515432651532	3.91605109813696	4.11996351855683	0.400178150141023	0.435900853450237	0.799403653016169
Merged-chr10-37262645-4	chr10	37262189	37263189	+	787.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123763.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.44851794767963	4.32249102998296	4.35665588105223	4.14903092800641	4.35808615127937	4.14650761998379	-0.391650086389563	0.393924437452513	0.772014404629083
Merged-chr7-29767232-4	chr7	29766778	29767778	+	968.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	5.24556052468999	5.56953884161867	5.5981239881329	5.58764398726472	5.63367296304318	5.68654379091547	0.299886983955817	0.369156529441618	0.753878426844475
Merged-chr8-26690142-4	chr8	26689666	26690666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134257.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.00151418534168	5.89678328788437	5.89090526833391	6.67342350565447	6.59974500792279	6.61988211304449	1.15632417607126	2.38903331062972e-05	0.000849878938481735
Merged-chr16-78217091-4	chr16	78216587	78217587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38367.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	7.78772280200662	7.44284174761546	7.48333592473193	7.68634141291433	7.62517174138639	7.53006887774346	0.0481664941049733	0.83917237332456	0.962725890398731
Merged-chr18-60795311-4	chr18	60794808	60795808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8541.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	3.57702715357849	3.51432271564373	3.39602822488422	3.77374001319693	3.73741721519608	3.58491951416003	0.706720959057805	0.211401177510448	0.60393700399263
Merged-chr2-11492543-3	chr2	11492046	11493046	+	776.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133232, intron 3 of 14)	intron (NM_133232, intron 3 of 14)	9544.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.88960272023706	3.94777862245181	3.95231941234851	3.78486794485039	3.81481682565241	4.06654070091913	-0.132794437569467	0.79500642533187	0.950976763402111
Merged-chr10-127587336-2	chr10	127586790	127587790	+	720.166626	f0_balb.idr|f1_balb.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33858.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.93200288248272	5.62559807854023	6.25060001366325	5.62790531792901	5.54904736383939	5.56254236324194	-0.669384969793511	0.0502690631932529	0.285339259852936
Merged-chr9-114844461-4	chr9	114843900	114844900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-248.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	7.59574282714571	7.89868574003264	7.41946450740554	6.89874564567293	6.70285995659767	6.29544332723235	-1.48896448915493	3.63422668930391e-07	2.22842103436698e-05
Merged-chr6-145116471-3	chr6	145115980	145116980	+	833.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281980, intron 1 of 18)	intron (NM_001281980, intron 1 of 18)	844.0	NM_001281981	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	3.75090590263736	4.01404504760581	4.03058507621859	4.69423441929634	4.76936932396177	4.67989409050608	2.1244312986078	8.10892745232964e-06	0.000333528242932993
Merged-chr15-59568019-4	chr15	59567514	59568514	+	840.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-80640.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.29442840316114	3.3258138278079	3.17896088124512	3.12706253329335	3.16251598104697	2.93913091579627	-0.790457230039933	0.234102820341467	0.63036877369004
Merged-chr6-129401766-2	chr6	129401266	129402266	+	794.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_001204239, exon 3 of 5)	exon (NM_001204239, exon 3 of 5)	4469.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	5.68394505126493	5.42374803079863	5.51256821459472	5.73946856342795	5.90602015981955	5.71564256122439	0.459848173162257	0.15285065884449	0.521331268287108
Merged-chr8-72375066-4	chr8	72374570	72375570	+	927.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289859, intron 16 of 21)	PB1D10|SINE|Alu	46404.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	3.9253355499592	3.72655774983126	4.38216954674201	3.67002696140077	3.82277156514904	4.03587145819684	-0.557125374861331	0.323602172021683	0.716811029964333
Merged-chr6-134897951-4	chr6	134897447	134898447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-14.0	NR_029441	72813.0	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	7.2357690007421	7.52406220141741	7.27136229167521	7.73237809621259	7.9898957041904	7.78634869320941	0.711818240367699	0.00284905209853998	0.040468406796742
Merged-chr1-181228577-4	chr1	181228051	181229051	+	858.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16573.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.06485466327041	3.98108716991537	4.26301324279566	3.6299677857413	3.58522324555859	3.668975891995	-1.54523562548185	0.00401008545940725	0.052030436754461
Merged-chr13-80963427-2	chr13	80962927	80963927	+	868.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015587)	promoter-TSS (NR_015587)	-647.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.73918060551143	5.57853187988537	5.66414652894327	5.32203359184613	5.2985799747131	5.29089603936346	-0.691784945704129	0.0351565976210293	0.230081195714823
Merged-chr16-94329437-3	chr16	94328933	94329933	+	951.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	1011.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	5.87108194203244	5.70803879506649	5.58753868635648	5.72911520329015	5.84090002913983	5.10846202578211	-0.215144837122328	0.565597092225111	0.866847419836075
Merged-chr6-5165155-4	chr6	5164705	5165705	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	28741.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.97962268715889	5.03114625535202	5.26749604852116	4.68817518352104	4.92424023014675	4.7484330993184	-0.637105276920404	0.105035279300003	0.432383887596825
Merged-chr8-36533520-3	chr8	36533015	36534015	+	785.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44324.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	3.57714990334228	3.54543368606723	3.35287298856459	3.23760795068775	2.94730958422985	3.25045883892146	-1.47682494824021	0.0246170021060239	0.185218510827203
Merged-chr9-40805467-4	chr9	40804974	40805974	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031165)	TTS (NM_031165)	4201.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.74191836252083	4.7954654209578	4.82106432809833	5.5297844288873	5.370989001924	4.96752837287693	1.13195169254985	0.00356066459334403	0.0477941247754428
Merged-chr2-117374008-4	chr2	117373512	117374512	+	767.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31135.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.07556820858755	4.90951744123701	4.90049620868029	5.52710003747073	5.18359316436515	4.62298582504252	0.429717675253528	0.324486597961648	0.717544999689449
Merged-chr11-114904144-2	chr11	114903644	114904644	+	761.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14103.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.90029423716358	4.5191137740372	5.28570733971727	4.81015668234097	4.55853877281336	5.40134956276069	0.07080750772193	0.88473572154169	0.973538624783452
Merged-chr4-40251134-4	chr4	40250617	40251617	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11292.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	3.10059948072113	2.99104648289834	3.05425211495237	2.95188161848804	2.77118311253521	2.82074541382051	-0.977002890791814	0.162349876216582	0.53582993535478
Merged-chr18-23821721-3	chr18	23821229	23822229	+	668.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	17759.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	2.96896999936206	2.88945102488776	3.14074465638824	2.98604718542664	2.89433368222814	3.42171495367056	0.504949497566187	0.475071934478351	0.821727753368561
Merged-chr4-53044762-2	chr4	53044262	53045262	+	687.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 39 of 49)	B3|SINE|B2	32882.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.75268462204175	2.50540208637708	2.74470613854694	2.56058569589588	2.28582197202349	2.99033153318508	-0.117485023606844	0.894805464358822	0.975601413556205
Merged-chr6-125360208-4	chr6	125359675	125360675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 5 of 9)	intron (NM_011609, intron 5 of 9)	10452.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	4.83048465534147	4.85729147922721	5.04300187189288	5.36006006551523	5.50182520060518	4.96107756669576	0.8379766078365	0.0299114903622885	0.208500903917676
Merged-chr13-64248992-4	chr13	64248500	64249500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122989)	promoter-TSS (NM_001122989)	300.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	5.82607847531457	5.92190093424176	5.87741584920209	5.89319067457655	5.54411275429509	5.53676526600798	-0.371284187808958	0.246394579507635	0.643462437124829
Merged-chr3-38144301-4	chr3	38143799	38144799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63820.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.75576410527173	5.56742450176077	5.66841663480319	5.99444698361643	6.1917034461612	5.64628674285572	0.558002166201092	0.0898554031588541	0.398367649232111
Merged-chr3-116859148-4	chr3	116858650	116859650	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113478)	promoter-TSS (NM_001113478)	-417.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	4.49236099827032	4.34008666004069	4.63296808878227	5.01037257888113	4.85067612196387	5.02793717682324	1.11325060765587	0.00648965779108306	0.0739612992029091
Merged-chr18-9707623-4	chr18	9707123	9708123	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-25.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.44362889175195	7.03278355708049	6.03619390258129	5.08069889658103	4.77436255720123	4.88180815330442	-3.10360674337989	1.47489424899958e-14	3.82314643834133e-12
Merged-chr8-95887333-4	chr8	95886811	95887811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	1054.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	4.75979539806223	4.88111033602382	4.84112898783971	5.07133579120312	4.76873602404743	4.53595018482766	-0.0226109094482696	0.956606066429686	0.989887454023164
Merged-chr5-110879838-4	chr5	110879355	110880355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267622)	promoter-TSS (NM_001267622)	52.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	4.77840604821368	4.51999807955676	4.56371108138807	4.45492239006379	4.09368346482451	4.5067148205747	-0.692257651209418	0.129115988144338	0.48060674337989
Merged-chr11-70228649-2	chr11	70228149	70229149	+	767.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007528, exon 3 of 9)	exon (NM_007528, exon 3 of 9)	1149.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	3.57093296761936	3.18079265283734	3.44948000471591	3.49037965806465	3.44247563072944	3.52047248647354	0.271821741621318	0.653989636747722	0.903623868780893
Merged-chr9-35101784-4	chr9	35101288	35102288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-14940.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.79946401664669	4.97673263635933	5.03044547038959	4.5715098568097	4.5986020566704	4.73821922690627	-0.695646880620387	0.081222335663957	0.377076834566007
Merged-chr3-100489381-4	chr3	100488869	100489869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142952)	promoter-TSS (NM_001142952)	-177.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	5.89233052429509	5.96941621615379	5.69115990204445	6.41845794250747	6.33074972108087	5.86537417814414	0.639212800513938	0.0465391589619406	0.272956832724387
Merged-chr3-19183614-4	chr3	19183127	19184127	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_001253390	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	4.11898490609523	4.27124872667453	4.25262205436154	4.45933898408057	4.16728326279409	4.36434411293066	0.314214299068202	0.4973768957797	0.833616591523779
Merged-chr10-125749218-4	chr10	125748733	125749733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-216986.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.62086659684743	4.59087593145896	4.35854899909423	4.46293039989934	4.44449477123402	4.51464385538354	-0.163847409994226	0.703049291648908	0.922108924938678
Merged-chr2-77277873-4	chr2	77277398	77278398	+	861.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	L1MB7|LINE|L1	2694.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.54092943076011	3.34876061016014	3.41633576112486	3.39475827415794	3.4832983781161	3.64512982396438	0.25573802257518	0.662638887667304	0.906804932599005
Merged-chr5-3433379-2	chr5	3432879	3433879	+	888.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	89486.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.72171158500222	5.99010700125336	5.43939882440239	5.71513158095491	6.2251810877456	5.89901968199885	0.395683426018117	0.261865620822266	0.659718531523246
Merged-chr10-105271422-4	chr10	105270922	105271922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177368, intron 9 of 11)	intron (NM_177368, intron 9 of 11)	303057.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	5.0925328891183	4.75183016463704	4.56716546858708	5.28417357564831	5.38338379185238	4.81605266221932	0.766537887523629	0.0754094093247551	0.36159125428477
Merged-chr10-94909549-4	chr10	94909069	94910069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35009.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.59535437098837	5.4238235073515	4.99102433649607	5.23964390476259	5.01061684640625	4.89861416182248	-0.632458351923967	0.107875473574958	0.438671801643296
Merged-chr17-50490869-4	chr17	50490370	50491370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18677.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.25022595447418	6.11891464131169	6.07926736119163	6.30545862287182	6.11730817402632	6.04879180986637	0.0155533541655518	0.956847846821828	0.989887454023164
Merged-chr4-155847408-4	chr4	155846914	155847914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010091)	promoter-TSS (NM_010091)	12.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	6.10831904185933	5.90067720146747	6.09168788408331	6.01414166075625	5.70188851923441	5.85263475287848	-0.308054665775686	0.31508049161967	0.709443354084583
Merged-chr11-70456966-3	chr11	70456522	70457522	+	705.3809200000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151496, intron 4 of 6)	intron (NR_151496, intron 4 of 6)	-2411.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	4.75852002211829	4.38561361138093	4.72522024267452	4.80583266412907	5.06884466906817	5.10825216631325	0.839171164044013	0.0430652538101927	0.260283925357336
Merged-chr7-100853519-4	chr7	100852988	100853988	+	860.4464109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9925.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	4.21942359255402	4.28877640762269	3.84968304242671	3.989039489177	4.14786821307399	3.80964553607374	-0.411866225185073	0.435657832328607	0.799255140831192
Merged-chr15-97789182-4	chr15	97788682	97789682	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	4817.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	5.23821493424713	5.22002341843049	5.39336960317561	5.09938302629642	5.10817006696971	5.24596623187038	-0.2713151146484	0.440704560550504	0.80190131151537
Merged-chr8-14859657-4	chr8	14859249	14860249	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28787.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.7539169258996	4.71385518603351	4.9195467835855	5.08578329045363	5.08376580410222	5.08847437676586	0.647807133626248	0.0845980709454106	0.3851628522229
Merged-chr2-45231016-4	chr2	45230517	45231517	+	940.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113575.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.62408764105411	7.42067401783988	7.39872952813352	7.63492712002547	7.50847285585652	7.39018707947361	0.0434950404148451	0.852287558068862	0.965371328076038
Merged-chr12-112589127-3	chr12	112588630	112589630	+	962.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	346.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	6.09212348460733	6.20040244584819	6.11209578888663	6.10719331311284	6.03064475699552	5.66999348986626	-0.30141903486088	0.324245154900815	0.717324268869843
Merged-chr17-17375764-4	chr17	17375263	17376263	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 1 of 9)	intron (NM_025934, intron 1 of 9)	1431.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	3.96335517363521	4.00696737134768	4.13770487661494	5.00265740421447	4.93409730143837	4.36068474208404	2.00321974293568	2.97550174177362e-05	0.00102097133579175
Merged-chr18-62172114-1	chr18	62171614	62172614	+	572.0	f0_balb.idr	Intergenic	RLTR17|LTR|ERVK	7867.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	4.55816343104274	4.48411734902479	4.61914101153474	4.50037383758037	4.48262591334344	4.43643588024257	-0.18878365059735	0.654312857339547	0.90374091983316
Merged-chr7-142389444-3	chr7	142388928	142389928	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.45597432027038	5.40690618679399	5.85709261937561	5.51190448968607	5.51392274105559	6.02468189367193	0.217047683141542	0.551685451446334	0.86140317538395
Merged-chr11-76484307-1	chr11	76483807	76484807	+	549.0	f1_balb.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	10188.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.52970416561439	5.47678787966433	5.91897342355769	5.5327790130352	5.84568594572724	5.71908279956462	0.122067889108132	0.720343698698425	0.928142072321482
Merged-chr1-64303079-4	chr1	64302583	64303583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181694.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.7000036317733	7.99114417877549	7.88595775338247	7.85072739756644	8.2315147810395	7.91855489135817	0.216850151228423	0.364423601408515	0.749807349620428
Merged-chr7-19257573-4	chr7	19257095	19258095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104069, exon 11 of 11)	non-coding (NR_104069, exon 11 of 11)	14259.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	4.33123238061688	4.20490424316015	4.53181255934044	4.42495759902938	4.45419828827376	4.67395351545675	0.414678060943027	0.352356164149084	0.740038661883916
Merged-chr8-123212871-4	chr8	123212380	123213380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	22.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	7.25386760576109	7.28181380592363	7.22286258984538	7.41716750330451	7.53084750317888	6.76698841916588	0.0588083695316966	0.837841377510611	0.962251281434133
Merged-chr11-85812655-4	chr11	85812160	85813160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	19728.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	5.78572994839991	5.95100918523603	6.04344041645816	5.55102143193055	5.72015099840705	5.72759676425764	-0.462063633152538	0.138312087860762	0.497020805986067
Merged-chr5-135686151-1	chr5	135685651	135686651	+	562.0	f1_c57bl6.idr	Intergenic	Intergenic	-2994.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	5.6397170925352	5.67683466119014	5.50744245425953	5.02999651509747	5.16893820484199	4.93100983431288	-1.10278851500024	0.00176428371531309	0.0280532236544567
Merged-chr4-43443284-10	chr4	43442768	43443768	+	882.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011571, exon 1 of 10)	5' UTR (NM_011571, exon 1 of 10)	991.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	6.64431383239701	6.80010165442543	6.74072462876427	6.86258866180603	6.84119047723022	6.73644983171629	0.137517536798558	0.582853569199874	0.873826743013405
Merged-chr12-3687286-2	chr12	3686786	3687786	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	114302.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	5.84276558156162	5.73054673441878	5.69053523110218	5.98348966521091	6.23315341763063	5.95827528681262	0.551222353726125	0.0705244096017881	0.348051683748595
Merged-chr11-75166272-2	chr11	75165772	75166772	+	671.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1880.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.15939807371876	3.32998867178245	3.2826935951922	3.34698581936707	3.2784788767015	3.4095298250402	0.334082486126963	0.584380801696575	0.874561879083458
Merged-chr9-77756278-4	chr9	77755793	77756793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151778, intron 1 of 16)	intron (NR_151778, intron 1 of 16)	1758.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.56495934896097	4.65753599844413	4.52722167790925	4.39136964290708	4.10588491202686	4.33444821527118	-0.805448032718159	0.0702257414369869	0.347137974374908
Merged-chr11-95347069-4	chr11	95346552	95347552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	B4A|SINE|B4	10034.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	6.06708234278502	6.33571620944266	6.32887978431355	6.15904431061214	6.41307036487344	6.25099377242031	0.0626199432691802	0.828175293158228	0.959634657485947
Merged-chr1-34831353-4	chr1	34830865	34831865	+	870.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	11685.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.22746760097435	5.00169400989107	5.34109142014258	5.33511342189116	5.03782528713892	5.40378642971345	0.139279899804549	0.708259545824237	0.923674318414978
Merged-chr11-114988110-6	chr11	114987547	114988547	+	871.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	intron (NM_145437, intron 1 of 3)	1839.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	6.65483874498107	6.31700411203854	6.8036157824997	6.82496052333885	6.78411269293145	6.61104949548741	0.234781459144906	0.402178068658391	0.77787096574423
Merged-chr11-8611292-2	chr11	8610792	8611792	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53243.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.4822362318769	4.60905907372745	4.57753886644154	4.46013911144065	4.07238844096071	4.48114163574992	-0.553452775932829	0.224791786897513	0.619702316011274
Merged-chr18-9449507-3	chr18	9449008	9450008	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	CpG	646.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	7.61924808513459	7.95490953426683	7.64814559138311	7.89085664865552	7.53361179878668	7.46566893455032	-0.154566199274468	0.542522080365943	0.857254738280054
Merged-chr6-125092560-2	chr6	125092060	125093060	+	750.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3421.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	4.15687844894653	4.03286201986556	4.11745587857182	3.96105064063975	3.65371046939209	4.14010678554095	-0.54034667096395	0.300149673295656	0.696920806328411
Merged-chr4-134547273-5	chr4	134546816	134547816	+	621.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 3 of 11)	intron (NM_029100, intron 3 of 11)	4850.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	4.17634081490578	4.1442950558812	3.82971259447048	4.89410099084368	5.03624391236195	4.1980590175924	1.77241916163144	0.00103983152973887	0.0185510938950498
Merged-chr13-52059933-4	chr13	52059443	52060443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-36798.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	7.33709231524647	7.34799134556345	7.40970089384741	6.96881106484761	7.31138521160001	6.98626314774492	-0.380095040283671	0.125803081117553	0.474483891988143
Merged-chr9-96714242-1	chr9	96713742	96714742	+	542.0	f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	5203.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	2.86940760988658	3.09796878031398	3.19706123462295	2.84645670173345	3.09867998352474	3.21314437935364	0.00447164209590012	0.994890449232753	0.998961028701257
Merged-chr2-117146792-4	chr2	117146261	117147261	+	782.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25690.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.11555929853372	5.99496998205759	6.09856717240352	5.92250403656035	6.21570971807515	5.68598518911772	-0.158530735094544	0.61743962945236	0.888810836054056
Merged-chr15-64128132-3	chr15	64127633	64128633	+	959.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-67685.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.47968581567695	4.6240301535989	4.19737894390038	4.05346737076607	4.24327099227089	3.95627714110452	-0.951672759420441	0.0535849780188809	0.29681126687492
Merged-chr10-84549982-4	chr10	84549476	84550476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040658, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	3362.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	5.5696181343181	5.70598699316785	5.75073230760886	5.83512050869925	5.79357691438816	5.56672317603679	0.130112843923391	0.68150188560684	0.914693263933768
Merged-chr11-8577677-2	chr11	8577133	8578133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	B3|SINE|B2	86902.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.91066396767283	3.95796417770527	3.89740724441864	3.61160327261902	3.70459607741661	3.91765864416114	-0.576569696361892	0.273436665910671	0.670659339634344
Merged-chr2-153298612-2	chr2	153298112	153299112	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	7196.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	6.3012257076274	6.30250644375559	6.71289085486035	6.64534720730116	6.72025258658978	6.81544225173398	0.456188050369332	0.101779530279261	0.425710869100299
Merged-chr1-152902437-1	chr1	152901937	152902937	+	1000.0	f0_c57.idr	intron (NM_001160257, intron 1 of 23)	CpG	208.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.45550345094796	7.01108936100245	7.22525846919699	7.3235127236463	7.17046580706567	7.32830957218656	0.041929062187416	0.869161039490472	0.969777123267097
Merged-chr5-124446031-5	chr5	124445526	124446526	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310727)	promoter-TSS (NM_001310727)	527.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	4.9098509385105	4.65016722634788	5.19221855650667	5.49294445790704	4.29799290311341	4.84564529688651	0.099047115924184	0.84874791568306	0.964368239368528
Merged-chr13-3525924-4	chr13	3525384	3526384	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12191.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	5.83943076239242	5.73521748592949	5.61950862128185	5.64019781041705	5.60316235370181	5.78728836184499	-0.125797251044886	0.689363399387061	0.917319650405699
Merged-chr1-59238123-4	chr1	59237632	59238632	+	836.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-901.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	6.06698015732732	6.48423830247549	6.09268435454061	6.18906652104931	6.37116168045321	6.1974940182827	0.0375941817852463	0.900766272287642	0.976979808706155
Merged-chr9-120029168-2	chr9	120028668	120029668	+	876.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-5570.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	4.99124544177555	4.43669003928519	4.55223023018725	4.84232206957585	4.62229919307643	4.5325050082705	-0.0355415230913716	0.937066347499204	0.986037792257163
Merged-chr8-81767199-4	chr8	81766697	81767697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424635.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	4.87612135394509	5.17064832150533	4.92583080343985	4.28893895457269	4.60615896128832	4.77055577118457	-0.999903842063606	0.0193722633110394	0.158109591523783
Merged-chr16-91403251-1	chr16	91402751	91403751	+	550.0	f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-2984.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	4.56994250074994	4.55352378716638	5.17015091764048	4.6224007661555	4.45684448793688	4.66835116819912	-0.478288344951313	0.291620597504979	0.689180216265016
Merged-chr17-84291440-3	chr17	84290932	84291932	+	689.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	L1M4|LINE|L1	-103485.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.22148677071024	4.46246899493566	4.53941167435629	4.01848240460374	4.16156494083419	4.56655532568452	-0.398167531910739	0.41434862262481	0.785785276982346
Merged-chr17-30027889-4	chr17	30027386	30028386	+	987.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	22847.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.91156033586741	4.50470754220537	4.87902142293415	4.98460182261832	5.47474399497639	5.25128278206102	1.03610858463267	0.011402486940362	0.110323038759726
Merged-chr3-88175352-2	chr3	88174852	88175852	+	618.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	2433.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	3.71072151752618	3.92824628935357	4.06765562306502	3.80049752736398	3.81420447313908	3.9509673468227	-0.159841742393179	0.760036085886463	0.940572672765463
Merged-chr4-108546247-1	chr4	108545747	108546747	+	822.0	f0_c57.idr	intron (NM_175472, intron 25 of 30)	intron (NM_175472, intron 25 of 30)	33089.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	3.14904896611204	3.24986264661145	3.05729861777676	3.64547884486225	3.52042600494728	3.3803867060896	1.44396415055485	0.0235503158297374	0.179859998123983
Merged-chr9-62363838-3	chr9	62363350	62364350	+	991.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	22507.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.23006462142026	2.79985069295696	3.08464706732839	2.56955858126564	2.594057667873	2.80033109887228	-2.15156778276004	0.00756239856364634	0.0826766600556937
Merged-chr15-67345679-4	chr15	67345165	67346165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 7 of 8)	RMER19A|LTR|ERVK	118896.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	6.28059581844768	6.34688508840242	6.62405316094894	6.30476150087687	6.2220348740866	6.39484171950728	-0.185184043139303	0.511222440150143	0.841331921585713
Merged-chr2-112454980-4	chr2	112454494	112455494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133749)	promoter-TSS (NM_133749)	-31.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	8.05508378517309	8.33716412485262	7.99627420224764	8.04199333280467	8.23140296003518	7.86968408777007	-0.112977474997505	0.63288621039502	0.895781348284166
Merged-chr16-14350944-4	chr16	14350440	14351440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10618.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	6.02918547625483	5.73993851715245	6.02747120374462	6.31398029712822	6.16371963865997	6.2568620476827	0.530255651674356	0.072436053993793	0.353484205073927
Merged-chr8-72572574-2	chr8	72572074	72573074	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151663, intron 1 of 2)	intron (NR_151663, intron 1 of 2)	751.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	4.21663779484167	4.07215031297777	4.11476251365774	4.33840723893638	4.27543704930912	4.23112344443325	0.404493214678607	0.380780950316188	0.762800321589017
Merged-chr3-126597124-5	chr3	126596574	126597574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001293665, exon 1 of 20)	5' UTR (NM_001293665, exon 1 of 20)	123.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	8.4050760202563	8.62622294318305	8.15269540950501	8.43428217076752	8.48910456755316	8.49604857095496	0.0796603394593977	0.724168210149069	0.929235307407624
Merged-chr9-94665120-1	chr9	94664620	94665620	+	773.0	f0_balb.idr	Intergenic	Intergenic	-4772.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.97909170727112	5.09420361191414	5.19207967617496	4.84226632795811	5.15586095618042	5.1266677243211	-0.073312184060156	0.845491637567238	0.963800698395686
Merged-chr13-112399331-2	chr13	112398831	112399831	+	818.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-64739.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.83140328465582	5.87216249414075	5.6651305586529	5.79266237627072	6.12500180165997	5.83477390695231	0.242915106012334	0.440653757474374	0.801899568428582
Merged-chr10-127598796-3	chr10	127598339	127599339	+	849.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	22309.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.64845832475027	7.47468694894188	7.74460576026842	7.5640682252036	7.75536035302234	7.48458658261398	-0.0147518153237035	0.949849008725012	0.988315240400101
Merged-chr3-97993753-4	chr3	97993234	97994234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19804.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.05170438779363	5.92413710918965	5.86302619789457	5.96780408756734	5.8897803310219	5.92451936107195	-0.0475053954474402	0.872123454981894	0.970261003150518
Merged-chr8-3314014-4	chr8	3313512	3314512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34395.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	5.502512724	5.17485533701438	5.58220547346099	5.39736060871967	5.3445116901848	5.81570587223119	0.191938627211495	0.600215543170946	0.881521356518052
Merged-chr7-105779120-4	chr7	105778629	105779629	+	853.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	MIRb|SINE|MIR	8421.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	5.32935126270319	5.63680881045614	5.73253915175666	5.57644142188345	5.48816261689017	5.64033893320389	-0.0108957130826153	0.974158904460512	0.994260005145451
Merged-chr11-111159494-4	chr11	111159011	111160011	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93347.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.38744554197988	4.8022250277021	4.38407669832346	4.69281807251884	5.00020917636314	4.40629233839657	0.438929229787129	0.351500857848083	0.739324655708375
Merged-chr2-59336724-3	chr2	59336224	59337224	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	49958.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.50164608707092	4.49379443070297	4.41388408590295	4.44897874847606	3.87074256331093	4.56285071006303	-0.390659681356952	0.437425581450068	0.799946781486006
Merged-chr7-35729832-4	chr7	35729333	35730333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	24621.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	3.91944744683583	4.08949204597427	4.01051920322185	3.35050279201163	3.13470183342893	3.52078943407257	-2.58363436289241	4.1251320093052e-05	0.00134342068191885
Merged-chr18-4044706-4	chr18	4044211	4045211	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121121.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.125208063596	3.01494908859929	3.18785294865787	3.4245909869569	3.41049366150087	3.37481993919861	1.24428146237993	0.0471237278393654	0.274844990773596
Merged-chr8-26884590-4	chr8	26884103	26885103	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60180.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.44539511831327	6.48941440004451	6.01045839790093	6.30599679132724	5.94317502995584	5.72556022233651	-0.539726077080279	0.104066769757176	0.430206070049439
Merged-chr10-45048835-4	chr10	45048338	45049338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18376.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	5.58530797770956	5.14549680986045	5.3688283892322	5.22768632801043	5.03630586975142	4.65360967174643	-0.767087682426272	0.0596351876610159	0.316099165173768
Merged-chr17-28525049-3	chr17	28524548	28525548	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-5813.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	2.66829991075812	2.81968352089653	2.75763198531972	2.58124191238583	2.42624067832867	2.70842299222686	-1.0266891926727	0.190126980230416	1
Merged-chr18-61107790-4	chr18	61107316	61108316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	2244.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	7.32628434603083	7.30988618932485	7.46345303113231	7.69512108535992	7.56527656505407	7.47959065005397	0.32584031740178	0.152993880311253	0.521584577905468
Merged-chr13-45387802-2	chr13	45387302	45388302	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1940.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.03753217397654	3.09242725889034	3.05053061027682	3.04508422549146	2.72585237442288	3.12281058256672	-0.421361376367763	0.5505378775322	0.860709619458349
Merged-chr3-116185418-4	chr3	116184938	116185938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-55750.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.84205537178429	7.35664990930259	6.94528611522591	7.2292176556895	7.68684666354612	7.11411471214889	0.452751023996804	0.126161285874527	0.475010311580905
Merged-chr3-88325020-4	chr3	88324508	88325508	+	897.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020003)	promoter-TSS (NM_020003)	-15.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	6.20236783424944	6.65265196125025	6.08626172426657	6.23011306936105	6.37405413268087	6.07754912817103	-0.179528768878751	0.569250458922684	0.8688875602138
Merged-chr17-50191024-2	chr17	50190524	50191524	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-527.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.75669765851795	4.31843455118655	4.3496613465791	4.82634987880936	4.59361539427945	4.51060007184646	0.373470331210616	0.410142018379948	0.783116615634315
Merged-chr3-60615505-7	chr3	60615005	60616005	+	992.7551269999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 5 of 7)	intron (NM_001253711, intron 5 of 7)	114326.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.20192076315159	6.29296185516864	6.05613755326668	6.12187839514669	6.33092992242839	6.20463127944623	0.0539808476582507	0.849911458806202	0.964746847431705
Merged-chr9-44259238-2	chr9	44258738	44259738	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178420, intron 6 of 9)	intron (NM_178420, intron 6 of 9)	-7774.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	4.13840075036128	4.14900135853251	4.60775562992362	4.25983931789573	4.18084196407878	4.27225720828824	-0.184930616951088	0.700802204230793	0.921002460903367
Merged-chr6-124425186-1	chr6	124424686	124425686	+	551.0	f0_balb.idr	Intergenic	Intergenic	-9331.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	3.4495586982205	3.10948312135004	3.31541876199064	3.37855160189098	3.30782983773274	3.49611128123675	0.363622898336837	0.559083565946566	0.864901733108576
Merged-chr7-35710483-4	chr7	35709939	35710939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 12 of 18)	intron (NM_178704, intron 12 of 18)	44015.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	6.97198402395637	7.13593911576282	7.06664126697174	5.86905815831273	5.67426108818074	5.84408735319852	-2.08584982839822	3.32594082046506e-14	8.21201435576428e-12
Merged-chr2-33978705-4	chr2	33978208	33979208	+	997.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90762.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.2382013390367	3.72153027300895	3.53903131911982	4.20140595600335	3.75033517662759	3.79135395369799	0.172967517853	0.777168789353285	0.945018349303776
Merged-chr6-140763766-4	chr6	140763261	140764261	+	852.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136876.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.34565999245824	4.49791210404755	4.63529002526863	4.64888425485104	4.79241230533637	4.30838653719016	0.291603757492823	0.516329996886815	0.844128937066923
Merged-chr8-46745693-4	chr8	46745198	46746198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	5953.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.84923779760903	4.61096991120389	5.03510305107425	5.01324860536362	4.71889906707324	4.85460633170669	0.0701144946603932	0.863835734156505	0.968269312109804
Merged-chr17-29998570-4	chr17	29998049	29999049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6490.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.42205313319418	3.99442235366014	4.18593753361922	4.48625148027966	4.39734531870984	4.39211292381478	0.556449317884226	0.236848657726899	0.63324025165927
Merged-chr9-67839271-2	chr9	67838771	67839771	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1125.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	4.25662213061765	4.48477164990166	4.34701133511963	3.78573030782396	3.5554992270303	3.7922814153216	-2.05376567411467	9.37529174282847e-05	0.00268444348016955
Merged-chr11-68514131-4	chr11	68513623	68514623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	MurERV4-int|LTR|ERVK	11104.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.12982479660139	5.02214118779716	5.12398923587462	5.06042161677178	4.75016537494403	5.25058570706956	-0.146298207852647	0.706439683649005	0.92295932039107
Merged-chr17-35919492-1	chr17	35918992	35919992	+	701.0	f0_balb.idr	5' UTR (NM_001357740, exon 1 of 19)	5' UTR (NM_001357740, exon 1 of 19)	220.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	6.66414396925475	6.38064455094504	5.88627065840201	6.26459854413919	6.43221628555782	6.32019279242492	-0.0334031390072019	0.918005714851314	0.981747877135909
Merged-chr4-58912743-4	chr4	58912227	58913227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	22.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	7.57174012518703	7.80983211029173	7.74561182633509	7.34218791594985	7.34996433675715	7.28087951870833	-0.567419286229687	0.0127293307915333	0.119207043403267
Merged-chr11-5786858-2	chr11	5786358	5787358	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1625.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	6.23804173380653	6.00934176656532	6.47113656968306	6.29648743113939	6.7894748587649	6.24445336290887	0.386814195277756	0.227776737059715	0.622912839439754
Merged-chr5-136170714-4	chr5	136170245	136171245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178751)	promoter-TSS (NM_178751)	-89.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	8.53517303464664	8.44836756498563	8.20718714339185	8.21284519360682	8.3204485564389	8.10513805389663	-0.265787786365647	0.226735768293368	0.621683520880303
Merged-chr5-137779723-2	chr5	137779223	137780223	+	657.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_027242, exon 3 of 4)	exon (NM_027242, exon 3 of 4)	819.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	3.89134648765258	4.18166281430744	4.50869024418513	3.94652638481403	4.18679868736368	4.60990451293651	0.157496619330017	0.770731373736035	0.94345245755247
Merged-chr5-148489110-4	chr5	148488614	148489614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	62559.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.81492032306467	6.92275242612649	6.63750272773133	6.42652562314222	6.8165959687605	6.64623784661323	-0.247406313557564	0.366486277228087	0.751561063600608
Merged-chr8-70701534-4	chr8	70701082	70702082	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010592)	TTS (NM_010592)	3843.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	4.60807484578998	4.19355381319768	4.3199617637941	4.42839708186841	4.18664806509525	4.09979977554376	-0.371439393634728	0.439731696516388	0.801322682458456
Merged-chr19-6018320-4	chr19	6017825	6018825	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045783, exon 5 of 5)	non-coding (NR_045783, exon 5 of 5)	-2500.0	NM_001110504	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	3.33478670641822	3.38169758261358	3.33960765974169	3.51001130631067	3.26187032833968	3.41112554686102	0.162550130333429	0.786451764255127	0.948503833695066
Merged-chr17-13007808-4	chr17	13007297	13008297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-42.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	7.63234076954749	7.73481596996355	7.50023877127877	7.66718136341293	7.49701659276341	7.46388034527371	-0.122301467872048	0.593125294834455	0.878410931874355
Merged-chr3-97206673-4	chr3	97206152	97207152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 9 of 9)	intron (NM_029933, intron 9 of 9)	20712.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.57080090896864	5.32987127942895	5.336793859376	5.72636483035517	5.74255911963335	5.69317138497555	0.562814108611348	0.0840822642883601	0.383731199788802
Merged-chr8-70633798-1	chr8	70633298	70634298	+	985.0	f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	5.74400057658557	5.4356729709805	5.07301781025257	5.98660341073747	5.72231563573367	5.36112312127884	0.488242615492864	0.213335779307647	0.606196206830948
Merged-chr15-64053756-2	chr15	64053256	64054256	+	701.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	6008.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.17887139069394	4.54241473556359	4.64753561808377	4.55394605676144	4.59224975560745	4.82232369580863	0.464870402702342	0.299531792463822	0.696302212307361
Merged-chr15-90677833-2	chr15	90677333	90678333	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	1555.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.15158107322256	2.83510820645378	2.91775831394866	2.68958277335997	2.7788247179298	2.74014029061782	-1.21520506586189	0.101343766956121	0.424624208715692
Merged-chr8-25039952-2	chr8	25039452	25040452	+	921.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081187)	promoter-TSS (NM_001081187)	-990.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.02390279364683	4.9766295470031	5.19588384556206	4.76065692667236	5.03084089222271	4.80677267831663	-0.391002983271107	0.312883008716808	0.707532595643769
Merged-chr8-84670567-2	chr8	84670122	84671122	+	699.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025788, exon 6 of 6)	3' UTR (NM_025788, exon 6 of 6)	-7770.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.24166342909704	2.13793350051375	2.38168475258237	2.10859447905364	2.13426010744667	2.33003235023313	-0.441936735800278	0.616746158720481	1
Merged-chr3-121723217-7	chr3	121722707	121723707	+	969.9892580000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010171)	promoter-TSS (NM_010171)	-330.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	4.52384974709609	4.54058092543296	4.19569053881898	5.50656903953196	5.40794867409092	4.84896927509755	1.89217612855443	3.25049694303045e-05	0.00110214893902069
Merged-chr17-84293363-4	chr17	84292884	84293884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-105437.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.34622136156385	6.30903282281794	6.20783226170851	6.27948570170399	6.22440834134233	6.42341679969442	0.0186813834768987	0.945880425681338	0.98796006280508
Merged-chr12-59195265-3	chr12	59194713	59195713	+	882.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24270.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	4.67888585249415	4.60707389813219	4.68718143002973	5.32517062341732	5.24162626811803	5.19481539106449	1.31108424849246	0.000480004308219625	0.0101847087825151
Merged-chr14-64368423-3	chr14	64367922	64368922	+	700.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	intron (NM_001253715, intron 1 of 4)	48534.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	2.86449768215436	3.05345318980673	2.93119860888632	2.8879731434646	2.65166740210036	2.81978520235315	-0.843785345071757	0.244337630795806	0.641614718441551
Merged-chr4-141658971-4	chr4	141658467	141659467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	5148.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.72751699019447	6.0900732848658	5.82930798793914	5.93533915801736	5.60017833766604	5.40264969718259	-0.402924311832052	0.241409995377136	0.63840120846778
Merged-chr1-92753891-3	chr1	92753390	92754390	+	978.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-77755.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	4.23112780633421	3.81846126004216	4.26092216698671	3.823857742956	3.80299399022449	4.24373668148464	-0.441906554850475	0.412743914339888	0.784588360697731
Merged-chr7-129759982-4	chr7	129759497	129760497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168134.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	4.37209896530862	4.58282083367004	4.85795243962499	4.01857321949028	4.10125225859358	4.44878614618449	-1.08887188252113	0.0242769497094815	0.183424326177483
Merged-chr15-67119547-2	chr15	67119074	67120074	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	57308.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.86429620540625	3.98031582289586	4.35398035854071	4.01761838568912	3.61129865711264	4.12930321914654	-0.428494790454546	0.44000364105189	0.801567033070239
Merged-chr10-12814056-1	chr10	12813556	12814556	+	598.0	f0_balb.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	47679.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.13681286108427	4.20402306653008	3.84692331034528	4.14666124344016	3.97792624602049	3.97159163126113	-0.134285905736864	0.789848142452032	0.949311112850285
Merged-chr8-120590257-2	chr8	120589757	120590757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.17603657886974	3.47970938551236	3.41952377139126	3.43816758754323	3.50818072960111	3.8416183326218	0.866503525257811	0.159206058050897	0.531163499530837
Merged-chr4-133871985-1	chr4	133871485	133872485	+	588.0	f1_c57bl6.idr	exon (NM_001285506, exon 2 of 21)	exon (NM_001285506, exon 2 of 21)	2746.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.50967015849228	4.51208809843237	4.92729214448416	4.44157675934186	4.47973675040925	4.51344060863982	-0.427045389382142	0.329670128955476	0.721455791124277
Merged-chr4-41098316-3	chr4	41097841	41098841	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016689)	promoter-TSS (NM_016689)	-158.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	1.98815484151225	1.88801536720457	2.17359584909401	1.85197836584227	1.79324629890281	1.85615439544599	-1.67763846435898	0.100325033803223	1
Merged-chr10-77974551-4	chr10	77974051	77975051	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4099.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	6.10925534431057	6.07854384449972	6.13013390458645	6.4430855218194	6.40319547634185	6.14696143268136	0.403789639499282	0.152264981423057	0.520263755512759
Merged-chr3-109253534-2	chr3	109253034	109254034	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-87149.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.89874529433743	6.12600382811955	6.02594164316121	5.7803077267809	5.78700134384854	6.02009652351553	-0.28521985504215	0.346484376222379	0.734677492075457
Merged-chr17-70991186-1	chr17	70990686	70991686	+	1000.0	f1_balb.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-670.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.35880168942836	7.44827253782184	7.4694853040995	7.57805284215639	7.54621813022593	7.54632421541467	0.193902047908248	0.379799427068372	0.762090062879934
Merged-chr8-123026192-4	chr8	123025740	123026740	+	886.1062619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	B1F|SINE|Alu	16044.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	6.32026187367581	6.08656392745848	6.33202874486562	6.38074964294926	6.83785651354554	6.44879775414055	0.547229372434765	0.0645483399856853	0.331146723524153
Merged-chr5-150892206-2	chr5	150891706	150892706	+	669.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	-60401.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	3.44496022775042	3.30270013446561	3.62948827198109	3.57446101588063	3.18324818252765	3.322203119041	-0.347285272026728	0.57864001294735	0.872437129840066
Merged-chr14-66188562-2	chr14	66188062	66189062	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 4 of 30)	B2_Mm2|SINE|B2	25262.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.19106137787036	4.00799680658294	4.3995285765551	4.6789302757259	4.62938710457198	5.07565889913403	1.51180017652043	0.0011211368992685	0.0196726189612681
Merged-chr4-116822260-2	chr4	116821760	116822760	+	881.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-752.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	2.72329863612243	2.68293013548498	2.59484275858889	2.93179668212372	2.71616011628408	2.9767297599367	1.08025342475986	0.149635095237465	0.516117590626348
Merged-chr7-127118789-4	chr7	127118329	127119329	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	RSINE1|SINE|B4	3200.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	7.44758365385366	7.806027196963	7.51202418356205	7.99327217569627	8.01745098255576	7.29786731953405	0.314361559083129	0.272718292221998	0.669951714189667
Merged-chr9-22394958-4	chr9	22394451	22395451	+	815.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5745.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	2.72106095200142	2.78639371855011	2.77545264259788	2.91943615472377	3.09416876883353	3.14718072401506	1.46327122150522	0.039985498568861	0.248879421608218
Merged-chr3-32409205-3	chr3	32408738	32409738	+	691.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26913.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	4.06512357212474	4.42671312926747	4.33897001396273	4.22953267707	4.11026127092923	4.44726363519998	-0.0680537654308783	0.887003872984893	0.973794308941933
Merged-chr1-80339710-1	chr1	80339210	80340210	+	580.0	f0_balb.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	980.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	6.92412172837295	6.94723961961376	6.95654694795662	7.12578919313614	6.83294830099643	7.19164470118421	0.166374396078293	0.511240396612092	0.841331921585713
Merged-chr4-146532637-2	chr4	146532137	146533137	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243139, intron 2 of 3)	intron (NM_001243139, intron 2 of 3)	14236.0	NR_045468	67524.0	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	2.79336005178457	3.12737947709738	2.9884041532932	2.63930285060873	2.57449471397518	3.0606137650023	-1.02700201945225	0.194023921265993	0.581296310830689
Merged-chr10-125274555-3	chr10	125274064	125275064	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34252.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.88486383803928	3.93873344945066	3.82159065264319	3.79268694858966	3.91577520583536	3.83989221360454	-0.10171091116788	0.842439894054822	0.963026538412585
Merged-chr19-55738312-2	chr19	55737811	55738811	+	576.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-3499.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.74065125350201	2.54722594570377	2.70430107084773	2.48344975270851	2.52899071176178	2.59180219078846	-0.767399184109426	0.322854088356234	1
Merged-chr7-46839027-4	chr7	46838500	46839500	+	965.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6804.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.20086081723904	6.32855816660063	6.54149697770493	6.42644458216421	6.3331590737749	6.04782991190044	-0.114049826285924	0.697916587444079	0.920123730782958
Merged-chr2-30267635-1	chr2	30267135	30268135	+	550.0	f1_c57bl6.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	816.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	3.60056518256714	3.51157562757949	3.62451521677264	3.979273468635	3.6193090883028	3.69580811934082	0.664785031255148	0.233514370301734	0.629830266582389
Merged-chr2-181523006-3	chr2	181522503	181523503	+	759.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	B2_Mm2|SINE|B2	2518.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	4.14773671272247	4.31943425968742	4.23999064364218	4.2628241103889	4.40267925139888	4.56049784562942	0.451304428839628	0.321245247712201	0.714806112358251
Merged-chr6-113749267-4	chr6	113748735	113749735	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8554.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	5.93099044456579	5.6255619627143	6.08851693250402	6.36331096408652	6.45088510312	6.29310144712358	0.833961599061546	0.0056883251361454	0.0670701654992754
Merged-chr7-83632440-2	chr7	83631963	83632963	+	984.0	f0_c57.idr|f1_balb.idr	intron (NM_023377, intron 1 of 5)	intron (NM_023377, intron 1 of 5)	446.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	6.80140494470494	7.17240695401762	7.24796465301297	6.98392026366202	7.29718872455703	7.04987768699041	0.0596041943656234	0.824687759572301	0.958596193929081
Merged-chr9-121298758-2	chr9	121298258	121299258	+	808.375	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	1256.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.19070313675101	6.16514960422482	5.63729073013676	6.92805470209054	7.0602120857443	6.34690478955973	1.27314674382668	0.000218828957866496	0.00538867118264438
Merged-chr18-80259595-2	chr18	80259095	80260095	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	3289.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	2.81612924621797	2.70708593067883	2.97454913683812	2.82776992088537	2.71847335054193	3.0461924437691	0.161978770779307	0.823471256874517	0.958366850481353
Merged-chr10-37139351-4	chr10	37138840	37139840	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-414.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.74156092098416	6.87120511264524	7.05100100373791	6.87658443643841	7.03527052495867	7.03198616205114	0.148378067797763	0.556701050727895	0.863728771832801
Merged-chr13-36190806-2	chr13	36190306	36191306	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	Tigger17a|DNA|TcMar-Tigger	73163.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	3.21055006454195	3.18759330414886	3.21081677103548	3.25457654054429	3.50020861034498	3.34060966788131	0.693160535664791	0.262039984908856	0.659922005577968
Merged-chr6-51559032-2	chr6	51558532	51559532	+	680.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	B2_Mm2|SINE|B2	13739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.95532099430685	5.96703672321541	6.02190541400819	5.83097427880811	6.15122599099691	5.94407202919817	0.0200862208495819	0.946677888424978	0.988007649185823
Merged-chr12-85575030-4	chr12	85574538	85575538	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24067.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.6917182071941	4.61684256519512	4.7738752437469	4.81393090875832	4.95823689317141	5.08407943736087	0.592782690184834	0.130949882466621	0.483616828093559
Merged-chr5-147431163-4	chr5	147430681	147431681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 1 of 18)	CpG	1025.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	7.84319251128781	7.64477141919252	7.89401709867727	7.90185326555173	7.32024154007585	7.81672753457381	-0.138424764072869	0.597847244246564	0.880483945172659
Merged-chr1-134063725-8	chr1	134063212	134064212	+	957.4874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15443.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.73264584308591	7.11432219509412	7.14842753209726	6.47625027186044	6.46257976596357	6.94656324179396	-0.576545680132317	0.049356340191255	0.282369742702326
Merged-chr10-51459780-4	chr10	51459245	51460245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20867.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.54500435796206	4.57176291562561	4.36600168594883	4.15708789205764	4.2896360331484	3.9337672398072	-0.939408319179291	0.0502305271462822	0.285205384202362
Merged-chr4-137724962-4	chr4	137724455	137725455	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081155, intron 19 of 24)	intron (NM_001081155, intron 19 of 24)	494.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	5.72237393019292	6.13041293874388	5.8191819631661	6.20911673223636	6.15006849308092	6.0047321191414	0.376542061603928	0.225573074226366	0.620581397263264
Merged-chr5-9012857-3	chr5	9012364	9013364	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-15718.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	3.15674547547337	3.54398236284621	3.15958749085411	3.30366622861684	3.31760227061308	3.29278720486451	-0.009145983561766	0.988659243019702	0.997426973334006
Merged-chr12-85339453-4	chr12	85338966	85339966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-104.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	8.15278856410083	8.08249150340782	8.10866820334437	8.31424466814441	8.22176294403574	8.05062835439695	0.124982127359005	0.554893290953741	0.862989905297353
Merged-chr16-11908883-2	chr16	11908383	11909383	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033509, intron 2 of 2)	intron (NR_033509, intron 2 of 2)	540.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	5.91193749695264	6.00163972371997	6.10596262136096	6.16597743011847	6.03234599034267	5.91503465573232	0.0739168614879801	0.801738826497109	0.953083301080086
Merged-chr7-100372696-1	chr7	100372196	100373196	+	627.0	f0_balb.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	463.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	6.22022109867848	6.5827880321783	6.54349177625507	6.28286439861595	6.57942153794869	6.40680830212839	-0.0358979244258856	0.900912033194082	0.977036017699748
Merged-chr18-60209266-4	chr18	60208783	60209783	+	877.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-2794.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	4.71733636226615	4.49062545730066	5.11015438147848	4.67574118082853	4.83489240077963	4.76612210455548	-0.0509654932632513	0.90619942164783	0.978603626740461
Merged-chr10-10459783-3	chr10	10459300	10460300	+	763.1777950000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	MamRep38|DNA|hAT	12514.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.59845965272652	6.92892788503819	6.79928200025965	7.16550069180494	7.52661625161024	7.26794964479341	0.835265460057105	0.00147389649703352	0.0244079697740299
Merged-chr17-17585318-4	chr17	17584821	17585821	+	910.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	39168.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.01329483079739	5.97674827403724	6.22034534740886	6.42481216799963	6.593790055586	6.45237164534949	0.717808265465122	0.0100402669696177	0.100685252919027
Merged-chr18-35730490-4	chr18	35729986	35730986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033168, exon 2 of 2)	3' UTR (NM_001033168, exon 2 of 2)	3497.0	NM_001033168	73449.0	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	SMIM33	RIKEN cDNA 1700066B19 gene	protein-coding	5.9096526258515	5.67260771469346	5.87884529601109	6.02215005967842	6.07599945708548	5.64868065215545	0.212714522688673	0.50672807156039	0.838542828803423
Merged-chr11-106153696-4	chr11	106153212	106154212	+	988.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 15 of 15)	intron (NM_011947, intron 15 of 15)	6215.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.76230353602369	5.59883634408386	5.64373618235903	5.62996121659779	5.57735607014154	5.65178280875433	-0.100777698543272	0.748883092534985	0.93711275444937
Merged-chr11-77604539-4	chr11	77604048	77605048	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	3267.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	4.64698450401654	4.74383707167015	4.66454016290704	4.90583718676866	4.83897885066653	4.8482032609664	0.404183793657137	0.301295318263047	0.69799282019306
Merged-chr6-113075498-4	chr6	113074986	113075986	+	687.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027009, intron 1 of 1)	intron (NR_027009, intron 1 of 1)	1758.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	6.51203052323664	6.86288238482282	6.85081249150394	7.00363265091051	6.92234115214258	7.03199676904811	0.363564148655604	0.16319725971657	0.53690169170079
Merged-chr3-87526437-4	chr3	87525950	87526950	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286844, intron 1 of 4)	intron (NM_001286844, intron 1 of 4)	872.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	7.04054222573531	7.10298834791071	6.88037012494957	6.47976732610759	6.63690006103969	6.39813759420197	-0.778670234859934	0.00277030587381142	0.0396304169072196
Merged-chr8-33652451-4	chr8	33651909	33652909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-829.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	6.51749387048597	6.73792822883673	6.70876871178574	7.70772068143273	8.01953859694669	7.59718670488178	1.69949028033531	2.74097639499319e-11	4.09463489900527e-09
Merged-chr11-70491312-2	chr11	70490812	70491812	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13962.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	3.78191692390884	3.45921474633246	3.66226458991672	3.54570714568568	3.51557636293867	3.14465087176522	-0.795208355496331	0.215859352908906	0.609244934233767
Merged-chr12-73286811-4	chr12	73286321	73287321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029580)	promoter-TSS (NM_029580)	-27.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	7.43480777416527	7.82861113166431	7.5255243747281	7.21437484953284	7.62712782710582	7.43956388740503	-0.2461018822429	0.341093014032552	0.730686899066382
Merged-chr9-109017719-2	chr9	109017219	109018219	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-20848.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	5.55974716043844	5.34042814613883	5.56734501440395	5.03995273065688	5.29590102498413	4.95597613181362	-0.736732665086465	0.0442341649296531	0.264717807499034
Merged-chr15-103304759-2	chr15	103304259	103305259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5679.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	6.43446507462935	6.09162563800627	6.60481700332306	6.54186005097057	6.44535656013231	6.22212877782049	0.0494171807173397	0.869306753474668	0.969788171765313
Merged-chr18-56707710-4	chr18	56707204	56708204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010721)	promoter-TSS (NM_010721)	-109.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	6.39917585795479	6.56761762320089	6.56298666020746	6.67176137008776	6.48292931482624	6.46297167690211	0.054178626245995	0.839081263749417	0.962691988776977
Merged-chr17-35821655-4	chr17	35821180	35822180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-33.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	7.51479890232812	7.40496270719708	7.14957613807022	7.52673103844346	7.84841774860505	7.51720711472483	0.400436460238266	0.11095346147607	0.44490461291026
Merged-chr9-124128637-2	chr9	124128137	124129137	+	877.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7094.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	4.01143277257601	4.44594659636573	4.70527054488074	4.220267637219	4.52819216047404	4.58526600300757	0.105514754788263	0.832339890337025	0.960616839788396
Merged-chr7-83642800-2	chr7	83642300	83643300	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023377)	TTS (NM_023377)	10783.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	4.24999163297217	4.16545449368514	4.77362533467598	4.15818892612562	3.91645592239291	4.31544705558654	-0.759233791868957	0.139206358493421	0.498475822073444
Merged-chr17-21650602-4	chr17	21650101	21651101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-10.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	6.82743524036668	7.14163132878456	6.65007312432483	7.08323410951519	7.21353674632247	6.84077097319592	0.249257238045214	0.370433003058632	0.754835402087431
Merged-chr19-25002308-3	chr19	25001793	25002793	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	MTE2a|LTR|ERVL-MaLR	2764.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.706154092388	5.76786196773334	5.57587704548072	5.91567362915374	6.13614329617769	6.00089062786624	0.589946749864977	0.0537528950063549	0.297284540603011
Merged-chr7-128312855-4	chr7	128312360	128313360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-14729.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	6.15280644068023	5.5907063354761	5.78936053720012	6.14776865690876	6.1522980771189	5.49981811648363	0.190454383134811	0.605680828726696	0.883581756351046
Merged-chr1-105748532-3	chr1	105748029	105749029	+	723.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-32194.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.38041271896373	4.11555046381707	4.27870071354321	4.08050898267695	4.31273784781181	4.30192624166611	-0.0671555145621045	0.886270052098965	0.973745715955602
Merged-chr2-170119441-4	chr2	170118945	170119945	+	819.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159683, exon 3 of 7)	exon (NM_001159683, exon 3 of 7)	11775.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.48178873904606	4.86562130511157	4.89198209484448	4.68519955677806	4.83240241023979	5.24175968277315	0.393370387771834	0.364955461166323	0.750178211776863
Merged-chr18-39253966-3	chr18	39253472	39254472	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	233273.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.80546923176259	4.03544966033173	4.03439251279556	3.73804249727983	3.90040570235979	3.86205235926889	-0.385032362391465	0.456866299973018	0.811921067428292
Merged-chr9-66503967-2	chr9	66503467	66504467	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 76 of 77)	intron (NM_145617, intron 76 of 77)	10626.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	2.85959196726271	2.63608246557274	3.32499259392447	2.86148329065121	2.95337547832854	3.07680977099109	-0.02041065737623	0.978857192853123	0.995160277495735
Merged-chr7-127293278-2	chr7	127292778	127293778	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-2982.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	3.65264094674055	3.89452036715451	3.69970454440545	4.12460848166974	4.24213316691145	3.93428788753169	1.08612875502059	0.0387929904706908	0.244240855862987
Merged-chr8-26687802-4	chr8	26687306	26688306	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136617.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.52337364014735	5.73605571551936	5.68883231072598	6.10436561271017	6.00282347436533	6.02130256379301	0.69704119021928	0.0216011041001389	0.170029767284491
Merged-chr18-55209204-4	chr18	55208693	55209693	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-216602.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.43228760722309	3.48877891359901	3.29752154561466	3.33687577494961	3.32203351397695	3.48103586337839	-0.140750574754666	0.813760968120285	0.955940138311315
Merged-chr5-121848257-4	chr5	121847768	121848768	+	811.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-729.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	5.84925240807347	5.87624372015885	6.39863888935802	5.86193671692716	5.70397780397904	6.16676381837514	-0.244470859412986	0.476110176917782	0.82233881775831
Merged-chr5-25527240-2	chr5	25526740	25527740	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	2.94663034635829	3.05785330961849	3.24278107606523	3.07814996361614	3.0207567258828	3.31325963970969	0.238956447001192	0.720223019346506	0.928078002637153
Merged-chr16-45149234-2	chr16	45148734	45149734	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 4 of 6)	Lx5b|LINE|L1	9439.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	4.79921435962657	4.85753000593946	5.0184794550459	4.35361634870771	4.86205000371196	5.01650966287262	-0.267060218111661	0.541213001967273	0.856765739682368
Merged-chr11-107405803-4	chr11	107405299	107406299	+	974.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	RSINE1|SINE|B4	64921.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.48307127415177	6.43643055152353	6.46982693773314	6.42392186546627	6.57431736719914	6.14489170930122	-0.0901353559625977	0.748947016910416	0.93711275444937
Merged-chr15-78879321-4	chr15	78878819	78879819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2129.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	6.75220201135069	6.53115844715393	6.78969127933919	6.64983797448037	6.73031397839761	6.77345454595776	0.0418748542360888	0.871521743429785	0.970223306350909
Merged-chr1-156039044-2	chr1	156038520	156039520	+	922.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 1 of 6)	B1_Mm|SINE|Alu	-1820.0	NM_001358626	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.55464592739196	3.52579723721293	3.76313442088016	3.8100090819685	3.79372976707605	4.2764165326582	1.1567813287847	0.0394472832600559	0.246648347714209
Merged-chr5-36549414-4	chr5	36548926	36549926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-18803.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.97494360405975	6.83233160729199	6.59541553981512	6.77076550630409	6.83618915283788	6.90647861830582	0.0265353615571854	0.918846752192788	0.981844538421417
Merged-chr6-97788748-4	chr6	97788254	97789254	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-18304.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.18412942317766	3.13509293143007	3.53011066328392	3.49078669434069	3.21061528884359	3.49723746702278	0.449733585953792	0.480972092607515	0.824891904452147
Merged-chr15-76350637-4	chr15	76350106	76351106	+	965.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	504.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	7.33865237643206	7.6918300340102	7.64933251846482	7.72009656557619	7.83978850257203	7.5641451957081	0.217985922494024	0.366616770485596	0.751704072179051
Merged-chr2-31446243-4	chr2	31445736	31446736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24034.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	3.57484046822543	3.36295625340988	3.40184997059097	3.56734122796827	3.50874445833998	3.29714156353885	0.0596503033423676	0.920686799417273	0.982463724790289
Merged-chr13-56611970-4	chr13	56611475	56612475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	2389.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	7.16366321984109	7.5235685725558	7.10835227094141	7.47814890745891	7.82917657972917	7.16626494572844	0.361297275850751	0.207135909418085	0.597920729067479
Merged-chr17-69179378-4	chr17	69178876	69179876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	CT-rich|Low_complexity|Low_complexity	20020.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.9921426094498	5.61491887549684	6.21191433455272	5.8005983734709	5.83928994247874	6.23357280760644	0.0181924738019911	0.95773077130015	0.989969855526119
Merged-chr19-43770897-2	chr19	43770397	43771397	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11411.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	3.0324000910902	3.26478958337577	2.78796156472422	3.143172165212	3.05413733024705	3.23725052232029	0.4154779749434	0.565718981314238	0.86688237163883
Merged-chr10-130314296-4	chr10	130313772	130314772	+	902.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8580.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	2.90591737977942	3.09349808319195	3.13657048795159	3.03169573368732	3.15757947059756	2.97089885530474	0.0638833765324855	0.924513411517932	0.982973950833402
Merged-chr2-58533518-4	chr2	58532986	58533986	+	941.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	27924.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.92175667735413	5.01077032676854	4.89006476654392	4.83539317929	5.06750021673132	4.99169335442053	0.0584240338183007	0.877327120146312	0.971560353131186
Merged-chr4-148085365-4	chr4	148084885	148085885	+	894.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2679.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.72212225676587	4.83319938122653	5.50514315848105	5.43309475460057	5.62721526959431	5.48607983052993	0.934656133585389	0.0230364736886805	0.177411230015354
Merged-chr2-165408014-4	chr2	165407516	165408516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054055, intron 12 of 12)	intron (NM_054055, intron 12 of 12)	-7622.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	4.02975337057441	4.03129815108461	3.97972306664052	3.84892420601343	3.89704664053259	3.89986465644123	-0.40824047338431	0.411218126997975	0.783877099438722
Merged-chr3-148770557-1	chr3	148770057	148771057	+	609.0	f0_balb.idr	Intergenic	Intergenic	184078.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.43688425609484	2.18192526693477	2.48843776722972	2.56336437712542	2.25818234577611	2.56307777408017	0.573697645802846	0.509018945775976	1
Merged-chr12-51729229-3	chr12	51728733	51729733	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 4 of 5)	intron (NM_001329698, intron 4 of 5)	-37319.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	5.40365118292863	5.56529815083216	5.57980077201007	5.32661442210118	5.16467130170454	5.15445657050913	-0.58640743269988	0.0865828815346627	0.38978458078971
Merged-chr7-49764195-4	chr7	49763730	49764730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	4718.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	6.09649261160854	6.12239450250641	6.04286381287544	6.08898868506819	5.98377500776621	5.81038523625779	-0.202714549553694	0.489157443925809	0.829459847891797
Merged-chr13-14064402-2	chr13	14063902	14064902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	618.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	7.75274988575563	7.62753367621928	7.41826955042175	7.56486226491994	7.32506407954523	7.44320923870318	-0.245172774839525	0.303555990233999	0.700121596457316
Merged-chr3-51560751-4	chr3	51560233	51561233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	90.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	8.17557877713349	8.5710010091466	7.86283806841505	8.22610331657791	8.36032671037028	8.10640253370137	-0.00940085482733684	0.971405507963898	0.993770547532012
Merged-chr13-59584585-2	chr13	59584085	59585085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030153)	promoter-TSS (NM_030153)	638.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	4.58701569274427	4.71298289152393	4.70642176101508	5.05705631606204	5.13735732726215	4.46265225911103	0.594807601530768	0.173886641142363	0.553140727918843
Merged-chr7-24661579-8	chr7	24661050	24662050	+	940.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030681, exon 1 of 2)	non-coding (NR_030681, exon 1 of 2)	256.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	5.28430180684867	5.06441498767654	5.23612546860005	5.20099323287241	5.11092005545232	5.29954192980175	0.00659900113791371	0.985238997685744	0.996873682039026
Merged-chr9-121265577-3	chr9	121265075	121266075	+	990.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 4 of 36)	intron (NM_177589, intron 4 of 36)	11597.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.03685820145841	4.1177523720859	4.14831773676098	3.75871288701775	3.71324890975571	4.17171125358949	-0.648608288568189	0.214829627666484	0.608043136777522
Merged-chr2-26360143-4	chr2	26359650	26360650	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-603.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	4.63203037450183	4.37976630224177	4.42026702921178	4.40815424642096	4.37408059617118	4.52971784374622	-0.131308100316497	0.763754890471465	0.941804973525244
Merged-chr12-99563615-4	chr12	99563117	99564117	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-224.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	7.36754879539435	7.46528516468427	7.14963671233665	7.50922089589175	7.6525416191194	7.37516578199714	0.267279904695279	0.269285051684569	0.666438561847887
Merged-chr16-55754048-4	chr16	55753560	55754560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68078.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.60012602390614	7.83283391100702	7.46676101659618	7.6734255003764	8.12903202468391	7.86538547678665	0.373170822207427	0.138745362401871	0.497691577630065
Merged-chr10-53348577-4	chr10	53348140	53349140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001204983, exon 3 of 13)	exon (NM_001204983, exon 3 of 13)	10954.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	3.63247936355382	3.41667571224093	3.62222888730021	3.59120850676606	3.5037048576075	3.41833729621845	-0.178466758378066	0.756781240099119	0.939700773811652
Merged-chr4-120054329-4	chr4	120053840	120054840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-106866.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	6.58709901796108	6.56862482094781	6.20556630858672	5.95617458157292	6.10042333909671	5.77712238680234	-0.85598028213658	0.00483312666987799	0.0597970590254548
Merged-chr15-90680160-4	chr15	90679654	90680654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-766.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	6.0494027488687	5.9901050669808	5.38220502855231	5.47646208561925	5.15943206996863	4.7760850930528	-1.27061281482926	0.00235533884737408	0.0349962607036866
Merged-chr3-51339820-4	chr3	51339321	51340321	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	CpG	823.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	8.01738359665329	8.08521764821588	7.82976221113857	8.05225830529863	8.00721719296785	8.0489746629035	0.0681852561213063	0.750688519086968	0.937588367655538
Merged-chr8-82383492-4	chr8	82383006	82384006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	19080.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.8349055187263	6.88920391215154	6.49199101199979	7.07109286241559	7.14764109986717	6.58965719559393	0.324530149418828	0.266508178229748	0.664166899200562
Merged-chr5-136151730-4	chr5	136151236	136152236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 2 of 2)	intron (NM_178751, intron 2 of 2)	12955.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	5.00924415390808	4.61003056307433	4.80813275148385	4.84554433523848	4.95310923591269	5.05233981901828	0.286436329396799	0.474365766438631	0.82139231300766
Merged-chr11-98709988-2	chr11	98709488	98710488	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 18 of 25)	intron (NM_001361995, intron 18 of 25)	8675.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	6.98314090832621	6.98871149270199	6.81083221098529	6.60982874351781	6.79801907203933	6.59223374704511	-0.400744748263859	0.117039462713466	0.456826138167842
Merged-chr13-60722893-4	chr13	60722392	60723392	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 10 of 26)	intron (NM_134062, intron 10 of 26)	63472.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.8554032289426	6.43242367894471	6.76134599073738	6.41522978279083	6.27943532104606	6.38332410897053	-0.54012312254302	0.0550309605914676	0.301409700427517
Merged-chr10-125273820-3	chr10	125273347	125274347	+	864.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34969.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.12375489261273	4.06516106272739	3.98596452786053	4.20677879406249	4.12731645881967	4.05568111934007	0.201934136994356	0.672851377609346	0.910966428144718
Merged-chr8-45337140-4	chr8	45336628	45337628	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153535, exon 14 of 14)	3' UTR (NM_153535, exon 14 of 14)	-3932.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	3.21895023877901	3.23207705218181	2.93880007175835	3.23331559759964	2.85748164467309	3.1377525732342	-0.251428969221886	0.719964003146124	0.927970408310442
Merged-chr16-44123529-4	chr16	44123030	44124030	+	819.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	15729.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	5.13725320635359	5.3681616012345	4.9666912874226	4.83828650560882	4.73278860423859	4.71696430088083	-0.898900088862266	0.0210342409901357	0.166893975808831
Merged-chr7-44553500-4	chr7	44552987	44553987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	478.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	7.81497356117164	8.01553843925914	7.8884675179981	7.70549646169974	8.15198382840939	8.04925008287536	0.107237571902914	0.652663496224043	0.902998982169989
Merged-chr8-72324494-9	chr8	72323904	72324904	+	873.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	5342.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.10172431376054	4.75202446656759	5.0765098678741	4.70352831342213	4.69502343411456	5.17132668817944	-0.262166822818516	0.530281900916623	0.851072941285938
Merged-chr9-44086001-3	chr9	44085477	44086477	+	874.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	1057.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	5.56592954952885	5.66555843933614	5.45612476920551	5.10435786456886	4.62978375351759	5.2461671263499	-1.1432552322461	0.00319492342098147	0.0442114066211585
Merged-chr5-124490870-2	chr5	124490370	124491370	+	566.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029532, exon 2 of 2)	3' UTR (NM_029532, exon 2 of 2)	7715.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	3.25487745163478	2.99909966334908	3.42540159088876	3.0645141152857	3.09925483103289	3.05107525316169	-0.683774272791242	0.307623566457114	0.703748535075429
Merged-chr11-68051978-2	chr11	68051478	68052478	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	85520.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	3.27878408776219	3.13841291006528	3.41084695948816	3.14783108078776	3.24675747522283	3.31969275167528	-0.151033763925142	0.809623677882607	0.954749848816598
Merged-chr2-131427160-4	chr2	131426663	131427663	+	974.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-64699.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	5.49237138489959	5.29315136492391	5.23788597626938	5.43846933889111	5.56888959869802	4.88592651660217	-0.00652971838665266	0.986700463815794	0.997073310870088
Merged-chr11-117959179-2	chr11	117958679	117959679	+	826.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10187.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	5.3815863918718	5.08174831662704	4.57330932023463	4.86442673739946	4.76717638375886	4.81627834180908	-0.546077706936265	0.209209497810193	0.600603915739393
Merged-chr16-57422281-4	chr16	57421802	57422802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	69025.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.54050462042976	6.4900981910198	5.97076008511302	6.05233507369231	6.36651676941322	6.26010242676681	-0.22315322351922	0.477364500134026	0.823237639056184
Merged-chr1-136684558-2	chr1	136684058	136685058	+	636.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045325, intron 1 of 2)	MER2|DNA|TcMar-Tigger	929.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	7.34138395532573	7.33906343297345	7.30364509937283	7.28948666095439	7.48973462379699	7.50843696745177	0.152572273961457	0.506483426159802	0.838459163279247
Merged-chr8-116587806-4	chr8	116587316	116588316	+	993.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 4 of 6)	intron (NM_029441, intron 4 of 6)	82801.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	4.3913134589785	4.06070964529586	4.24632323330813	4.16076797960359	4.45027092815199	4.26881865277344	0.175714298710835	0.711403793783873	0.924661173262022
Merged-chr11-121093038-2	chr11	121092538	121093538	+	725.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11899.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	4.74725509410901	5.00164269165024	4.86587449296496	5.20189605062203	5.36249147411795	5.07992202688563	0.741887032091311	0.0492638322060198	0.282135380975875
Merged-chr16-17891792-4	chr16	17891313	17892313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010048)	promoter-TSS (NM_010048)	-85.0	NM_001109750	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	6.71726359809666	6.93859970908935	6.64030158499423	6.87162818924061	6.52523587242604	6.36546877746881	-0.26199090369175	0.360237301659563	0.746468721585269
Merged-chr9-44234211-4	chr9	44233724	44234724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-178.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	7.25985861687456	7.3583637541819	7.29816981030604	7.45133396846275	7.77021364453875	7.43276356177914	0.385711708984206	0.108171498954401	0.439360250170741
Merged-chr6-31182523-2	chr6	31182023	31183023	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	35951.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.20269975830096	2.93136309823803	3.21454431089486	2.82143921523295	2.97711420923859	2.94247811067434	-0.955278061479856	0.172841471948682	0.551550730636907
Merged-chr12-12292361-2	chr12	12291861	12292861	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	30222.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.72684219093882	4.68592915596899	4.90297009567191	4.90334791856817	4.92732573375715	4.9676239303706	0.370332093668019	0.336861403201815	0.726861060604748
Merged-chr11-115182553-4	chr11	115182117	115183117	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025400)	TTS (NM_025400)	4699.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	3.60960800508105	3.19288801918956	3.41887038388704	3.01206673281809	3.38673930493024	3.38029368652802	-0.568965010109075	0.394906949982539	0.772579826044138
Merged-chr2-93462528-4	chr2	93462011	93463011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-9.0	NM_007656	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.59717337036471	7.4293945122852	7.01070095613386	7.1957419749252	7.13348943428879	6.72419010849637	-0.499608201029005	0.0816310503325951	0.377936736701323
Merged-chr11-72490047-4	chr11	72489547	72490547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153060)	promoter-TSS (NM_153060)	-127.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	2.53960155606979	2.4000874202738	2.68101025135544	2.44800815425984	2.35988849730357	2.57176766988687	-0.499218966354236	0.536673849992894	1
Merged-chr3-9901795-4	chr3	9901223	9902223	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68044.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.02881002582324	3.90692928590243	3.68856907224787	3.99435616630883	3.68754280724604	4.15703366578627	0.195090649847536	0.721524347112869	0.928503945058713
Merged-chr12-108634307-2	chr12	108633807	108634807	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-1446.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.77181140682439	4.79609162052316	4.70102892213391	4.46310327364228	4.72590370024903	4.76684434988177	-0.237602262307254	0.561478138840108	0.865407801976397
Merged-chr11-97150633-4	chr11	97150174	97151174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-962.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	7.30700111931613	7.19928273739314	7.37991862285836	7.28175299822835	7.30536466037995	6.89490275403438	-0.163875738802915	0.517324069495526	0.844527792582824
Merged-chr17-67317067-1	chr17	67316567	67317567	+	651.0	f0_balb.idr	intron (NM_001357625, intron 1 of 32)	MLT1E1A|LTR|ERVL-MaLR	37392.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.54588964791813	3.97773036862741	3.77991380329836	3.69436868741437	3.57933608037427	3.46682162398921	-0.662972020293329	0.250795055470418	0.648153521953385
Merged-chr5-5415619-4	chr5	5415133	5416133	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35382.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.29879965639328	3.03890825229906	3.29543130499812	3.1826989152995	3.23859313797182	3.42006404963188	0.271616541798682	0.669949279984475	0.909823240621416
Merged-chr15-53373966-4	chr15	53373459	53374459	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-27776.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.69930677614179	3.85684740178671	3.61798117939487	3.73964290142334	3.48113034120571	4.03356361943056	0.0959832184334427	0.867806496345965	0.969442397421746
Merged-chr11-51833630-4	chr11	51833139	51834139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 5 of 12)	MIRb|SINE|MIR	23842.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	4.89181455654807	4.86120110059095	5.0604839287543	5.15038006358795	5.06740596973911	5.34012979223521	0.532915158741011	0.151903624549404	0.519634796559235
Merged-chr8-4613111-4	chr8	4612583	4613583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145591)	promoter-TSS (NM_145591)	-87.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	6.8295836015723	6.8370462135578	6.95185261878862	7.17512819721351	7.01619804673198	6.65529414592166	0.161669955984362	0.545917126555519	0.858429818323978
Merged-chr18-33719378-1	chr18	33718878	33719878	+	679.666687	f0_c57.idr	Intergenic	Intergenic	-75514.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	2.07731579156448	2.14111065666625	2.12370716885181	2.65111998206394	2.33138021487044	2.60512661345891	3.25835005628023	0.00182730910412232	1
Merged-chr11-3169188-3	chr11	3168674	3169674	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 7 of 32)	B1_Mus1|SINE|Alu	24289.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.91360733842187	6.11992381804941	5.9328377701081	4.554311547023	4.01805473132499	6.35833630153648	-0.884392771205581	0.543453510251538	0.857551302506722
Merged-chr3-27211175-2	chr3	27210675	27211675	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	28171.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.8712323824059	6.04847559355291	5.89315447507011	5.79598355192846	6.00332691853711	5.77735840099986	-0.125499033276769	0.680662160009692	0.914386323043327
Merged-chr12-100026868-4	chr12	100026379	100027379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	62380.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.66623024968338	5.56762220683506	5.6604332635295	5.59677645717233	5.3590603650899	5.5877101063877	-0.225220017473296	0.489128733465797	0.829459847891797
Merged-chr7-110878266-2	chr7	110877766	110878766	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 18 of 20)	intron (NM_194464, intron 18 of 20)	-15313.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	3.22488177573396	3.4563755313108	3.65643576261447	3.60019936561789	3.25796480743309	3.46682343359946	-0.0206889219073684	0.973451163518297	0.994039095662068
Merged-chr7-141025632-4	chr7	141025126	141026126	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	-8734.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	5.98517125882015	5.89083069209681	6.24928498777661	6.3959612166645	6.53895022378692	6.18599050129237	0.590285190087652	0.04708915169049	0.274748904975969
Merged-chr5-103911214-4	chr5	103910719	103911719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359986)	promoter-TSS (NM_001359986)	40.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	4.43463409452936	4.23703208686542	4.02646070477975	4.51044155047303	3.83687076619752	3.88033559067457	-0.350913285910393	0.526767795929224	0.849674228738008
Merged-chr10-5191762-4	chr10	5191249	5192249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	2958.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	6.18623917555414	6.39327025842186	5.74283959716179	5.93635013559181	6.1769643240949	6.01278891892512	-0.168427898578713	0.606622332649971	0.884240420935614
Merged-chr10-96619235-2	chr10	96618735	96619735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	2234.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.25374012524153	6.29933594026728	6.32390806392058	6.23851030994998	6.61979707981726	6.01301886440934	0.068623259408114	0.823468384651171	0.958366850481353
Merged-chr17-24172415-4	chr17	24171927	24172927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2749.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	7.67270964991572	7.73675380103557	7.7636513438995	7.81447393354088	8.28393057239229	7.68592095588269	0.345237273044199	0.177344426803256	0.558267151201776
Merged-chr7-49778346-4	chr7	49777837	49778837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133740)	promoter-TSS (NM_133740)	-21.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	6.06996239181421	6.36476747734583	6.21954905237492	6.09152689296887	5.64575059152696	6.17854373886683	-0.418127417372255	0.193718462479914	0.581008752695408
Merged-chr10-81184370-2	chr10	81183870	81184870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	PB1D9|SINE|Alu	452.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	3.74035972136968	3.62173369874986	3.98053927185622	4.03782954802586	3.90964636792065	4.00194513514544	0.635607012120428	0.224338791011188	0.619090360474606
Merged-chr2-132631022-4	chr2	132630531	132631531	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033468, intron 4 of 5)	intron (NR_033468, intron 4 of 5)	32835.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	5.20370355930133	5.37355504278657	5.334389427834	4.86203602639585	5.20938784567525	5.61494510706757	-0.0981147360827787	0.803585415157643	0.95351077179348
Merged-chr1-118459590-4	chr1	118459070	118460070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027901)	promoter-TSS (NR_027901)	-305.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	6.94343164845272	7.34948079222669	6.46504168590531	7.02910425184214	6.91996498100835	6.50552658848438	-0.21076394480262	0.525123367632907	0.848874487604023
Merged-chr16-75887378-4	chr16	75886859	75887859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	21907.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	6.09007375884768	5.9533149839314	6.00729471943558	6.25481655534255	6.21045378323793	6.35791977927912	0.427536101388864	0.129938514764054	0.482137076320509
Merged-chr3-38115010-3	chr3	38114534	38115534	+	727.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93085.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.73017779484918	4.68257649626329	4.33593840976261	4.81178745998549	4.67873639544312	4.90425046515774	0.439922581231538	0.302577956102336	0.699228182013852
Merged-chr4-122833306-2	chr4	122832806	122833806	+	613.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2921.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.13334508094835	4.05612299138901	4.30412050727763	4.3999125494198	4.32666321333956	4.09182855767483	0.342043073564656	0.469362925589892	0.818977178978635
Merged-chr11-40733546-4	chr11	40733030	40734030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	-93.0	NM_013552	15366.0	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	5.97265319562635	6.18424375778195	6.05562757237722	6.31343053719314	6.47846690805927	6.20468344181259	0.4523721214898	0.1151847464643	0.453033939247855
Merged-chr5-101994259-6	chr5	101993651	101994651	+	887.5166630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	75770.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.41278739290724	4.24037586795234	5.08047143237714	5.8312304252268	5.88062350048378	5.95010058939785	2.67179442619136	6.79602073328554e-10	7.66237524627674e-08
Merged-chr13-34236949-4	chr13	34236458	34237458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	RSINE1|SINE|B4	73994.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.56237154538802	5.34687823281932	5.14867231578248	5.76407998800777	5.94793702154514	5.51657899088247	0.732077715854219	0.0379364775834448	0.240944845947888
Merged-chr18-60523938-4	chr18	60523442	60524442	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2212.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	6.34402404615465	6.71831216719595	7.04444506903488	6.28076619807849	6.31582975214201	6.50409000168952	-0.577043900855426	0.0608848567482117	0.319729072912919
Merged-chr19-58943598-4	chr19	58943083	58944083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327998)	promoter-TSS (NM_001327998)	89.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	5.91285031172603	5.9801280394996	5.34676515871936	5.66282678105622	5.87957851502414	5.51085281858983	-0.157436126459619	0.662172672529072	0.906680441274318
Merged-chr7-63925503-4	chr7	63925026	63926026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	8669.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.91967598665894	6.18732844476356	5.75031636872434	5.80379800542371	5.99699948525188	5.83905635965214	-0.154246131894635	0.625804989958805	0.892672753660696
Merged-chr17-5595269-2	chr17	5594769	5595769	+	567.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	102669.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.73315054970932	3.66096278518375	3.46167115681116	3.40760845495318	3.57539973540432	3.79700056544972	-0.108493525581607	0.852093817614673	0.96531854415899
Merged-chr11-115718025-6	chr11	115717573	115718573	+	840.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9476.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	3.69148920294711	3.8787795777516	3.74067226722225	3.55154066917934	3.60986779480033	3.65356322916232	-0.580896177854956	0.2863724824471	0.68363782585898
Merged-chr10-79889588-4	chr10	79889099	79890099	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1254.0	NM_001329541	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	4.87998604829325	4.53238987274383	4.94256185877314	4.62773734231585	4.10211128653806	4.72497306694878	-0.689675556736842	0.146393789317832	0.510331229700642
Merged-chr12-103346301-2	chr12	103345801	103346801	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	(TCCA)n|Simple_repeat|Simple_repeat	9700.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	4.97452002715645	4.63010330997355	4.56584889448195	4.70907900108883	4.59068643390938	4.63345285136736	-0.235434183286926	0.57686745366914	0.87183934693588
Merged-chr6-108661680-4	chr6	108661188	108662188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104577)	promoter-TSS (NR_104577)	-754.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.41234166434633	6.53520455128582	6.34675114399652	6.19432692328541	6.04224614076041	5.75468230551064	-0.698625082587008	0.0186917111977351	0.154648494117643
Merged-chr13-37715008-2	chr13	37714508	37715508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111030.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.93997049385447	3.03822430724529	2.91477919931713	2.95528003450587	2.57490442136326	2.6667206334849	-1.14766742304797	0.135671905772134	0.492409500987395
Merged-chr2-30591081-4	chr2	30590577	30591577	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3967.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	3.72551530054806	3.43965233952472	3.48744905494439	3.42096329794753	3.74818392853396	3.55902153467533	0.102645863023751	0.861851658696509	0.967996224966109
Merged-chr14-73411115-4	chr14	73410606	73411606	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25817.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	5.90870650205438	5.82441497124427	6.43652340511513	5.86801743022714	5.81471083749322	6.08828756047576	-0.261915818211375	0.43544730491699	0.799027463227912
Merged-chr3-60537266-4	chr3	60536756	60537756	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	36077.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.68304579840134	6.57545463352402	6.43824515425159	6.54468463772607	6.81801555881781	6.31991893901084	0.0270991827944502	0.924800580163772	0.983070278897208
Merged-chr2-25194610-4	chr2	25194112	25195112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146115, exon 2 of 2)	exon (NM_146115, exon 2 of 2)	2201.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	6.23505503119834	5.85610737350126	6.4325046737058	6.01968753521065	6.09412920593089	5.92209458674234	-0.286075628496823	0.368048529191675	0.753001770764222
Merged-chr10-91188136-3	chr10	91187630	91188630	+	959.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16511.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.5372183872547	4.77610883716258	4.38659350122014	4.51796649643675	4.45345518126506	4.58508297982619	-0.175391470112757	0.686412282705179	0.916744136935131
Merged-chr6-50132846-3	chr6	50132344	50133344	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	21984.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.10339834562439	5.21716680079196	5.45867986671346	5.12806542370165	4.91366293306169	5.29229559588026	-0.309747584074038	0.40954006158842	0.78289359350861
Merged-chr1-93343606-4	chr1	93343118	93344118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-27.0	NM_023200	66385.0	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	4.72179926875994	5.03857666676736	5.14646798147029	4.89462441049991	4.76370722675834	4.71182956178195	-0.400799903724841	0.31947677724191	0.713488854059233
Merged-chr19-23045111-2	chr19	23044611	23045611	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96115.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.47735023773779	3.5496544158135	3.55411500911614	3.42710177479383	3.42133182161361	4.04669351784082	0.449655753626948	0.464426677991007	0.816412565447834
Merged-chr1-6624748-4	chr1	6624233	6625233	+	955.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-105318.0	NR_045189	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	3.04439217534912	3.38679105383938	3.32373618033982	3.37009038926038	3.40801326893093	3.16018179570744	0.247148151204399	0.702764321571694	0.922000148631826
Merged-chr2-151535645-2	chr2	151535145	151536145	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6838.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	3.03534157336377	3.07364868298	3.28516807457251	2.97316039799913	2.83977888030644	3.35533951418594	-0.282468966061171	0.687779728006898	0.917193226920892
Merged-chr7-107602944-2	chr7	107602444	107603444	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	-3900.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.19192482061497	3.13524641456109	3.09421312334158	3.22437744088913	2.91034268112828	3.28152349952035	-0.000202540794693107	0.999758013261404	0.999955333581252
Merged-chr7-64011951-4	chr7	64011435	64012435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73020.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.51726186352634	5.58163922793451	5.29022406830942	5.29284876373981	4.95306884268052	5.15332107767818	-0.685353581687225	0.0567923908269311	0.307234981856009
Merged-chr7-83649011-3	chr7	83648544	83649544	+	953.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	6451.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	5.58122077098576	5.77581044441562	6.09327359058621	5.57915835878493	5.48873733007392	5.87543065733776	-0.320999546178133	0.351068760208509	0.738976205399181
Merged-chr11-76461383-2	chr11	76460890	76461890	+	697.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291186, exon 4 of 18)	exon (NM_001291186, exon 4 of 18)	7075.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.16581477312678	2.17485993200165	2.22710221366951	2.35062673255238	2.13900159457904	2.55672098212869	1.12465402423503	0.204853291293074	1
Merged-chr5-106696717-5	chr5	106696236	106697236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026856)	promoter-TSS (NM_026856)	94.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	7.97697868880361	8.3144220080947	8.2240844993945	7.99517624207519	7.99680277315022	8.1579309714173	-0.184003399726358	0.410575525663946	0.78346905949881
Merged-chr12-51768885-4	chr12	51768352	51769352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144788, exon 25 of 43)	exon (NM_144788, exon 25 of 43)	60684.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.51664589480001	4.37175485817622	4.01585353751865	4.17765404807773	4.15939532704475	4.50057336887352	-0.124572918635991	0.800424560766395	0.952530841455605
Merged-chr2-32775673-4	chr2	32775149	32776149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	-16.0	NM_001290563	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	6.6065332111517	6.48934303142151	6.48713168955233	6.56092162410453	6.59043695421829	6.56409943397631	0.0669504450478884	0.795385238695479	0.951115413620565
Merged-chr10-20773350-4	chr10	20772845	20773845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48267.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.56734458562618	7.47705895853321	6.69751818466205	7.43818614140382	8.01698958479464	7.00673661144804	0.371751963302776	0.52023210257331	0.846284903048289
Merged-chr8-70646107-4	chr8	70645673	70646673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023217)	TTS (NM_023217)	13565.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	7.33332088292127	7.21304913236365	6.26946792232863	7.95371874412321	8.30968145042122	7.39457142160247	1.34258623093813	0.0383164789593977	0.242359375237823
Merged-chr1-152905673-2	chr1	152905173	152906173	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3027.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.10736851320763	2.91241230374858	3.00460392649357	3.01569196442403	3.05693754825452	3.07705486114386	0.176950910551177	0.790307302262399	0.949368241827272
Merged-chr2-11300568-4	chr2	11300070	11301070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008859, exon 18 of 18)	3' UTR (NM_008859, exon 18 of 18)	-38919.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	4.78769226544177	4.67337766415516	4.67747133942193	4.69355556831002	4.90974234001705	5.03534412863695	0.379913208444139	0.341817018911711	0.731017930321085
Merged-chr4-133666362-3	chr4	133665843	133666843	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356466, intron 2 of 3)	B1_Mur3|SINE|Alu	6304.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	4.56877262838261	4.31231472614761	4.7563103185602	4.05712899567295	3.59893796105603	4.37074090061441	-1.39665330210284	0.0119762490028835	0.114122735573973
Merged-chr6-117863119-3	chr6	117862619	117863619	+	741.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360938, exon 2 of 5)	5' UTR (NM_001360938, exon 2 of 5)	238.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	3.53342842553665	4.21966625294842	3.78578741151267	3.74633750308171	3.55939152782782	3.64136871323097	-0.760794292693331	0.199775506816071	0.588380304797947
Merged-chr7-135767673-4	chr7	135767171	135768171	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51292.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.26258315294914	5.36155500485013	5.30782297108246	5.52578849243902	5.5681018633191	5.30721098540483	0.329891094852844	0.329874301303404	0.721504110160967
Merged-chr6-97282703-1	chr6	97282203	97283203	+	697.666687	f1_balb.idr	Intergenic	Intergenic	-29923.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.49922401881049	2.39529442408522	2.42312295388516	2.62383066172617	2.38547360113994	2.62633864787796	0.634635775172256	0.430681209011412	1
Merged-chr12-3291185-4	chr12	3290694	3291694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	18775.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	5.14819837048664	5.35511351886933	5.03881694746317	5.39844245687226	5.43933848328367	5.27855933387346	0.36269682551919	0.306530145226584	0.702754183171147
Merged-chr13-23543964-2	chr13	23543464	23544464	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	-88.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	7.10860924369366	7.16186788683251	6.75568679261238	7.22753001999024	7.66454353322245	7.2255775075122	0.549789451269607	0.0463407100547296	0.272387524882307
Merged-chr4-19697195-4	chr4	19696694	19697694	+	862.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	11810.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	5.41169914388429	5.69453366460341	5.64228635238848	5.41427893874074	5.74430768212763	5.62363911335637	0.0359272200344592	0.914878972208704	0.980957559882244
Merged-chr5-117120853-2	chr5	117120353	117121353	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	724.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.93352780914809	5.01462222459783	5.23499005976877	4.87140367880044	4.56675538372303	4.66851031702488	-0.790579241572113	0.0487355179501926	0.280270139557541
Merged-chr14-79552589-2	chr14	79552089	79553089	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-35071.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	4.1083411944051	4.23581128932487	3.74759646580828	4.10011445563898	4.04493409770474	4.18032582271158	0.138446704807068	0.788319959261631	0.948908830222811
Merged-chr10-62542617-3	chr10	62542116	62543116	+	600.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15171.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.57759943228762	4.31321359768657	4.71149261708524	4.50918015894648	4.10924649609526	4.66600283898007	-0.250070967679418	0.599545576484839	0.881068655236582
Merged-chr18-12237089-4	chr18	12236592	12237592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-706.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	6.45382134530707	6.63549537407246	6.66563474942606	6.70805261607185	7.12775364678761	6.60699359955679	0.411626289775163	0.149519892798834	0.515961080764456
Merged-chr11-95869680-4	chr11	95869147	95870147	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 7 of 10)	intron (NM_008081, intron 7 of 10)	10830.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	4.3128554392422	4.14742400202952	4.10274577155019	4.57661452560304	4.3673124651622	4.07030007037448	0.444794073239197	0.357279271328591	0.743881833868217
Merged-chr2-45085814-4	chr2	45085297	45086297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	24480.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.65920206597916	7.72582534300668	7.22208058483916	7.49354460232036	7.84371843831885	6.95720725392076	-0.0959792282524089	0.759132009243757	0.940311236380535
Merged-chr19-43931113-3	chr19	43930597	43931597	+	919.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9101.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	6.31560481504207	6.52064817399916	6.14804918398739	5.4391411699857	5.4739738981953	5.4249956763641	-1.58951058124881	3.62648113747493e-07	2.22531152276559e-05
Merged-chr6-128838460-4	chr6	128837969	128838969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-12154.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	6.81598482757608	6.91594110238589	7.17258552071293	6.96541811289481	7.35816988999038	7.00269479406096	0.24346696915769	0.366222861147053	0.751283584197618
Merged-chr19-12011089-4	chr19	12010565	12011565	+	936.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25675.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	7.45350731775166	7.48648215705884	7.29200702533202	7.67698985964855	7.86487447171574	7.09191356582405	0.263379588035672	0.35085698050496	0.738815453164556
Merged-chr11-117881122-4	chr11	117880629	117881629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7603.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	7.35093175536882	7.6719017327088	7.19378885914394	6.77955624387795	6.91422202830933	6.67236394294721	-0.948815017048051	0.00035996168178873	0.00808849355070934
Merged-chr5-88559346-3	chr5	88558853	88559853	+	804.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4891.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	4.15045718681587	4.47148048962373	4.46534379471697	4.40969300796572	4.43771883258095	4.83057706652972	0.491183621454143	0.287839729086744	0.685245511851696
Merged-chr3-88490845-4	chr3	88490379	88491379	+	796.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2433.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	3.7177858930095	3.88094363168946	3.40970496478414	3.30954489187726	3.08968535889195	3.84913149236076	-0.796810203876632	0.250292017116721	0.647595052037769
Merged-chr16-95730353-2	chr16	95729853	95730853	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27946.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	2.91823221434677	2.5868763680257	2.77551252086146	2.43805467322042	2.41862875531539	2.53424342070395	-1.85835001547376	0.0249883444935515	1
Merged-chr7-31155558-4	chr7	31155056	31156056	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4385.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	6.11524269830072	6.76923639448524	6.9268086090549	6.70394957910856	6.71586040958657	6.58113463538704	0.0403996824121401	0.899351088536841	0.976616057095901
Merged-chr14-33320239-4	chr14	33319686	33320686	+	963.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	CpG	90838.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	3.95022781184014	3.63292344085464	3.67344165864842	3.61379246596433	3.32949322366936	3.79484616749908	-0.607725700640592	0.303776000973761	0.700294220341559
Merged-chr17-15808623-4	chr17	15808125	15809125	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	17961.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.7075771216432	3.42699874851971	3.6015196493311	4.27025273956802	3.94793197568332	4.34767202851758	1.93442719775599	0.000558784676170743	0.0114633519070057
Merged-chr10-52426724-3	chr10	52426241	52427241	+	817.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	9194.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	4.70931759138088	4.96619988654044	4.92659981741759	4.71974932994911	5.00455939114947	5.02582722606369	0.117987083413807	0.765807397161852	0.942288269002771
Merged-chr18-11832999-4	chr18	11832493	11833493	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	-6281.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	3.36983144921507	3.53461050184063	3.78951370438739	3.57419612411303	3.35926468333646	3.71383203949415	-0.0666602117453379	0.911177452633585	0.980026994912141
Merged-chr9-42138582-3	chr9	42138117	42139117	+	888.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14320.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.03078804922267	3.1972034419981	2.85457320988718	3.05973769757123	2.97845833867954	3.39434950869965	0.48449443227494	0.495149297021327	0.832330963768699
Merged-chr6-108165106-4	chr6	108164592	108165592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	intron (NM_145937, intron 3 of 8)	20491.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	5.13115868111576	5.22721928072457	5.36259915169338	5.9992517981125	5.98921853544364	5.25887083681457	1.06974763979111	0.00449342590326807	0.0568013145262019
Merged-chr10-127637590-2	chr10	127637012	127638012	+	707.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5474.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	4.82242520146289	4.2350290997952	4.30007206037307	4.42458319403502	4.15279655483735	4.12413524780205	-0.635312704055682	0.203076870724476	0.593044889392741
Merged-chr19-29503977-2	chr19	29503477	29504477	+	750.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015567, exon 4 of 4)	non-coding (NR_015567, exon 4 of 4)	18010.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.5422275621802	3.16270609728045	3.33741743779769	3.43660244186314	3.39188342259618	3.35201220399426	0.138850734691621	0.822272075008494	0.958041123079214
Merged-chr13-60688386-2	chr13	60687886	60688886	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	86175.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.61680768593898	2.54241400993938	2.81879942454711	2.47658590537766	2.46574070430689	2.65384316592352	-0.745450537908831	0.343029430899049	1
Merged-chr6-22494111-4	chr6	22493619	22494619	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138038.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.43856614185723	3.88367067373405	3.44641231132251	3.85111755885369	3.92525415094527	3.95171097324269	0.948000670375437	0.105475668164041	0.433467644421075
Merged-chr5-36796818-4	chr5	36796314	36797314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-60.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	7.2921763025866	7.49976804672107	7.59091508675511	7.2639983803056	7.15582313778425	7.13333448744551	-0.410080060988815	0.0852313184305928	0.386417890479637
Merged-chr13-102717208-4	chr13	102716693	102717693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23635.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.87576256263238	4.95621843702422	5.13129566343573	5.2549353122335	4.93797809424233	5.25790169659772	0.350184178301021	0.356513943298434	0.743329963766064
Merged-chr19-42177172-3	chr19	42176652	42177652	+	860.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164531, intron 2 of 11)	intron (NM_001164531, intron 2 of 11)	6585.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	2.76317412932305	2.65666335595112	2.75820650853092	2.53325149947234	2.54924038900026	2.70931347409345	-0.732962705621192	0.333547558031115	1
Merged-chr3-123481470-4	chr3	123480954	123481954	+	987.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008939, intron 4 of 10)	intron (NM_008939, intron 4 of 10)	26612.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	3.41084566780135	3.25044740331046	3.04078647861962	3.16892838430408	3.08454011418884	3.40146143589624	-0.121134575434601	0.855211157383889	0.96611830650047
Merged-chr11-115420034-4	chr11	115419505	115420505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183285)	promoter-TSS (NM_183285)	-86.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	6.81756317680042	6.5446882506	6.69404990788931	6.89576481530034	6.58044800083701	6.37625726545735	-0.0762828068823513	0.789410522998752	0.94921167421876
Merged-chr19-6234783-2	chr19	6234283	6235283	+	938.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198168, exon 2 of 14)	exon (NM_198168, exon 2 of 14)	1057.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	2.96386747695755	2.76618497260025	2.75298789085279	2.97980788409983	2.79885962871205	3.01178620076969	0.465042511599419	0.516132428122416	0.844051513295388
Merged-chr10-81088001-2	chr10	81087501	81088501	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	10871.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	5.12021911137202	5.30512163588057	5.61161881487693	5.47290628871992	5.50876346476657	5.54016742538774	0.307196270252282	0.381356611237926	0.763080052613635
Merged-chr5-122280655-7	chr5	122280111	122281111	+	889.964294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3787.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	6.23093557234553	6.26359223453463	6.0214087170849	6.03325239329553	6.23864733337845	5.96275084758364	-0.152761363923005	0.604324511533503	0.883029381406957
Merged-chr16-4371971-2	chr16	4371471	4372471	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	48527.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	3.3321440704317	3.49537697337305	3.18819786437716	3.10322625266712	3.15418858521831	3.26078018310436	-0.740226968249477	0.245479886111504	0.642586288846572
Merged-chr14-47004120-7	chr14	47003600	47004600	+	953.152405	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	2760.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.37950334276724	4.548548585333	4.43515759630291	4.45142875455144	4.56231794472082	4.50234395556927	0.125779890148462	0.768780098748399	0.942938240859946
Merged-chr16-95723427-2	chr16	95722927	95723927	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	21020.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.31762714779722	4.4171911827475	4.38504075479171	4.2423321496569	4.3530849219777	4.32060283358365	-0.17401910213781	0.694761726424262	0.919217788511748
Merged-chr19-12439322-4	chr19	12438810	12439810	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11405.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.34755837721154	7.00549701565571	7.06501193999356	7.33255562190842	7.34347096910605	7.22377688058777	0.227051668625111	0.357304806633908	0.743882424811519
Merged-chr16-65582898-4	chr16	65582393	65583393	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-20196.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	3.10759299706017	3.02826116101646	3.00581544954734	3.15742480114392	3.13577198196134	3.19664403413194	0.494871562631977	0.443683282818878	0.803884349333946
Merged-chr12-17681519-1	chr12	17681019	17682019	+	549.0	f1_balb.idr	Intergenic	Intergenic	-9290.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.90112567467489	5.73569544448781	6.17543097070109	6.10420644377697	5.99430738026761	6.0689578021182	0.203176427108473	0.508002090848098	0.839550861029232
Merged-chr8-104245981-2	chr8	104245481	104246481	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	2577.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	4.90939975544519	5.1152855277753	4.74673360799761	4.8135562683108	4.77826842332352	4.30673258867918	-0.620797286935813	0.160353652518105	0.532965919658045
Merged-chr18-37969835-4	chr18	37969310	37970310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175684)	promoter-TSS (NM_175684)	-79.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	5.16892045191048	5.33496809693932	4.84695525978489	5.1996966630663	5.17240661533117	4.74445471677548	-0.161126017943923	0.692238433727774	0.918622600591208
Merged-chr7-97800331-3	chr7	97799839	97800839	+	781.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	RMER15|LTR|ERVL	11798.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.08111452943929	4.74337915549774	5.47241732935165	5.61953830135185	5.95873150777517	5.9528540280212	1.41031990062504	0.000251541917364872	0.00604150184471149
Merged-chr4-108458740-4	chr4	108458247	108459247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	-679.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	7.38075381879604	7.35823027005395	6.99809057486857	7.58730517600509	7.68163733554274	7.26776091148448	0.391183899977882	0.132818570722724	0.487669562823071
Merged-chr10-96621777-2	chr10	96621277	96622277	+	811.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	4776.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.25220326823173	4.03137191475105	3.8412412008477	4.0487511138467	3.95481720904732	4.11406017516738	-0.0726292738598516	0.885826873850097	0.973636976161493
Merged-chr15-84190084-4	chr15	84189592	84190592	+	897.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054088)	TTS (NM_054088)	-2141.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	4.37881545235128	4.16156193503457	4.57766045587362	4.59546453039915	4.1692012170583	4.78881264436243	0.395095118947998	0.416354718444149	0.787276375342114
Merged-chr13-116985070-3	chr13	116984571	116985571	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	RMER16|LTR|ERVK	40445.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	2.95645799904687	3.37913697679063	3.31419058862554	3.2008813111435	3.38129097635785	3.38524432440518	0.38138402908973	0.563558459346473	0.865992481769395
Merged-chr17-25869248-2	chr17	25868748	25869748	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026633)	promoter-TSS (NM_026633)	-510.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	4.00342345206897	4.0642561352649	4.28366713970727	4.28675746137957	4.04398739733198	4.07824959601756	0.0727049798218693	0.880977352191636	0.97262624933271
Merged-chr5-36578642-1	chr5	36578142	36579142	+	540.0	f1_balb.idr	intron (NM_001113362, intron 2 of 14)	RSINE1|SINE|B4	3755.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.85928655944307	3.68758982513462	4.02199618332525	4.01441982594736	4.01561757431672	4.04352084877276	0.517888508301982	0.309009523871752	0.704802606494279
Merged-chr16-95990956-4	chr16	95990441	95991441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	19.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	6.66110768070553	6.84150092420273	6.8103753771114	6.6923923459562	6.72776028150351	6.36867670295426	-0.243745441156201	0.365622029504973	0.75071889665134
Merged-chr7-101863669-3	chr7	101863169	101864169	+	877.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252552, intron 4 of 6)	intron (NM_001252552, intron 4 of 6)	-6479.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	4.03336153606306	4.05988079383755	4.03269936045631	3.96910979474743	3.84424646704632	4.19201362152005	-0.129618166675771	0.794725806088815	0.950859801179641
Merged-chr11-44520315-4	chr11	44519858	44520858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	981.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	7.47848196167389	7.38801220735308	7.50009009920886	7.7791722817248	7.96305202734851	7.56702935838352	0.484129175720681	0.0393331303086809	0.246207109510624
Merged-chr7-45919397-3	chr7	45918936	45919936	+	688.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010129, exon 4 of 5)	exon (NM_010129, exon 4 of 5)	1413.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	2.95471473974425	3.21832967555428	3.37418560749299	3.00699749322749	2.73072627288446	3.17750283632026	-0.944050498397465	0.195272625571601	0.582959408315219
Merged-chr4-3053300-2	chr4	3052800	3053800	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118783.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	2.54499845177242	2.43486282424686	2.62960865745219	2.34311721466086	2.2576287842324	2.8197210481769	-0.242523610558223	0.780606828638695	1
Merged-chr9-22468323-4	chr9	22467821	22468821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	35.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	6.91491396310869	6.96103017457582	7.10444714574828	6.75300141639787	6.70402337150916	6.66698296115617	-0.435530836823568	0.0789837017340455	0.371324699355131
Merged-chr17-28699679-2	chr17	28699179	28700179	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	7111.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	5.46818595951512	5.31662208074651	4.95843340821351	5.57128671930863	5.36888980058874	5.37847922910174	0.321233929437226	0.381402696007086	0.763085068523772
Merged-chr1-180849055-4	chr1	180848569	180849569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2082.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	9.33440425077062	9.2747708027341	8.51039804003254	8.94273999860332	9.36554098846674	8.76134107123603	-0.0596785119475435	0.839913212269072	0.962784121274377
Merged-chr6-28420991-4	chr6	28420492	28421492	+	902.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028900, exon 1 of 2)	exon (NM_028900, exon 1 of 2)	732.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	5.10151927447399	5.22716751357691	5.05821639321819	5.45656870783666	5.4378414145923	4.80504310163442	0.29600660748112	0.457611538514239	0.812373447305312
Merged-chr6-97460004-2	chr6	97459504	97460504	+	661.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346639)	promoter-TSS (NM_001346639)	-718.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.42232420651806	6.79105735525585	6.71347400678816	6.8724460104649	7.04260346883834	7.09227626119742	0.548678067481908	0.0390097689203859	0.244956973234282
Merged-chr1-153751161-2	chr1	153750661	153751661	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	ORR1A1|LTR|ERVL-MaLR	1735.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	6.50573717459081	6.74407935837976	6.33220460088021	5.93582581225971	6.57780167071952	5.76799675630667	-0.620843973505369	0.0813587852011805	0.377347889990045
Merged-chr15-58132868-2	chr15	58132368	58133368	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	2214.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	2.92398969534482	3.03271795942972	2.96119620134215	2.95907643524874	2.76689387352578	2.78493831034868	-0.662562711844312	0.34720138233114	0.735337319817997
Merged-chr6-24662059-2	chr6	24661559	24662559	+	722.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	(ACTG)n|Simple_repeat|Simple_repeat	2936.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	3.26822427008319	3.43251601111709	3.17718621544991	2.98906928191909	3.01584090406087	3.13112366344388	-1.13202316381771	0.0851047246514736	0.386252608791229
Merged-chr2-128756456-2	chr2	128755956	128756956	+	853.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	57541.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.57163348683768	3.62023177648509	3.61044737038053	3.29304880205403	3.30713858142037	3.67986861621061	-0.631003063276543	0.289741264493601	0.687430963346381
Merged-chr14-55763247-4	chr14	55762749	55763749	+	957.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020490)	TTS (NM_020490)	1821.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	7.00944713883542	6.92824138631555	6.8466187379009	6.92400606976925	6.91151919762401	7.19337840679651	0.114643927758009	0.64809027854722	0.901671976480297
Merged-chr2-120567641-4	chr2	120567164	120568164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-7.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	7.77386208783144	7.66552597834872	7.46046637687884	7.80387721604235	8.03526122281505	7.7142169630425	0.31478465751364	0.184535843970931	0.568277516844309
Merged-chr19-11765668-2	chr19	11765133	11766133	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4782.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	2.97467635420922	2.892865225763	2.98297496127603	2.84458309517597	2.65694560436919	3.22157309195243	-0.12477436362791	0.866677468408046	0.969114221403526
Merged-chr1-84840706-2	chr1	84840206	84841206	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 1 of 3)	intron (NM_025386, intron 1 of 3)	865.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	4.34385826768297	4.42023854651266	4.44555325469605	4.48999436682829	4.53087644993307	4.74779439008095	0.463384566416163	0.280173817425462	0.677926210657904
Merged-chr15-64263204-3	chr15	64262707	64263707	+	735.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	49466.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.45737029391771	4.63736903987118	4.73562819865409	4.99169693016615	4.7226058494954	4.64196612984156	0.438669824605371	0.293630200374388	0.690424156263798
Merged-chr18-68059232-4	chr18	68058746	68059746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126073.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.0142075503679	5.84399121249706	5.26386123237795	5.13209405039426	5.00933793113331	5.32932603190339	-1.16360055797547	0.00233674359182319	0.0347889351280781
Merged-chr9-86513579-3	chr9	86513101	86514101	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 16 of 38)	intron (NM_177208, intron 16 of 38)	46447.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	3.04545337427402	3.01862063227481	2.96705819369006	2.97984453149119	2.73539500088962	3.15557839640002	-0.236683353307163	0.737865822264665	0.933858424870961
Merged-chr9-44334567-4	chr9	44334046	44335046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010436)	promoter-TSS (NM_010436)	-169.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	6.10563994288842	6.0136601866177	6.33446452873659	6.12891565026192	6.01665245944937	6.51473426231829	0.127496691165563	0.682252833113624	0.915044974923355
Merged-chr9-90250461-2	chr9	90249961	90250961	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	Lx8|LINE|L1	20308.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.21747168228771	6.06208963273821	5.90975542949566	6.30311246943086	6.26635655999082	5.78553646923998	0.128491897388367	0.686050943311404	0.91659539440007
Merged-chr7-71873999-4	chr7	71873512	71874512	+	866.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35683.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.23257038443512	3.95200461083987	4.33445096705574	3.62008702942836	3.835939751148	3.51324152603708	-1.56954819881948	0.00638223082255209	0.073087346859746
Merged-chr16-90445593-4	chr16	90445095	90446095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 2 of 10)	intron (NM_015755, intron 2 of 10)	59198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.83460043974909	3.8658076231114	3.51784016480742	3.82090471739756	3.79091201775208	3.70516585174935	0.0571864339072525	0.917327931976067	0.981588017376699
Merged-chr2-180124853-3	chr2	180124350	180125350	+	913.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	5484.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.33892832514716	5.18532623285818	4.712403545817	3.99836185432353	3.67318955520446	3.88586278474256	-3.54332220851058	7.13738083548133e-11	9.78397338647002e-09
Merged-chr7-3664996-2	chr7	3664496	3665496	+	720.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181820)	TTS (NM_181820)	844.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	5.44211981421653	5.59795516768493	5.5358177520567	5.64125523418128	5.66777538889376	5.68073304826354	0.253711214887602	0.42421965720569	0.792582837182752
Merged-chr17-45562974-2	chr17	45562474	45563474	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-962.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	5.13941117235347	4.89404032077007	5.34946219272953	4.93107669512781	5.07928835543886	5.41163277159522	0.0330737353104066	0.933164762354793	0.985356091252617
Merged-chr13-100832869-2	chr13	100832369	100833369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	CpG	558.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	8.58730177704309	9.09324085966399	8.61159087564876	8.76595552089849	9.02480283438717	8.75453635371027	0.0911670790659889	0.707908575814788	0.923606271223831
Merged-chr7-110237758-1	chr7	110237258	110238258	+	654.333313	f0_balb.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	16055.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.22377475833369	4.35579139205879	4.31090367032328	4.33552514250716	4.0667392017047	4.46229088211872	-0.0281805521236519	0.951949791351654	0.989010341350836
Merged-chr4-40970981-4	chr4	40970486	40971486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	43.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	8.33328651721373	8.4165052991241	8.15736022291636	8.40738302147001	8.3028388201236	8.27220875958082	0.0252658610900389	0.904618278501601	0.978142219404953
Merged-chr3-65965448-2	chr3	65964948	65965948	+	772.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7199.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.5713671516725	3.42693073773613	3.38634544554852	3.92097089297406	4.0224875359338	3.69481989609324	1.45433776224041	0.0110204430897095	0.107627820259219
Merged-chr4-147941014-6	chr4	147940600	147941600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029841, exon 1 of 3)	exon (NM_029841, exon 1 of 3)	205.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	5.57656590529154	5.46988349864001	5.90701275361841	5.79688054718985	5.10611772733363	5.4575990190694	-0.328005259464296	0.391595309346224	0.770650232967068
Merged-chr1-88211914-3	chr1	88211436	88212436	+	809.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201645)	promoter-TSS (NM_201645)	-23.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.48730405266772	3.70038071222032	4.10279918050717	3.56718116567184	3.75261799926644	4.51124181224775	0.654497881383931	0.311269671164902	0.706465219571547
Merged-chr11-20914123-4	chr11	20913607	20914607	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82999.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.46700277227754	3.47810634076554	3.60466275363412	3.23914552000966	3.28189021123602	3.57266649887114	-0.56925256159026	0.344304726454705	0.732980075743821
Merged-chr11-75190510-4	chr11	75190033	75191033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144491)	promoter-TSS (NM_144491)	-50.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	4.31652525368619	4.06064136264122	3.82706624741918	4.19088100208142	3.68778623501492	4.05440243485917	-0.285866306594558	0.602668146804128	0.882397657327329
Merged-chr15-77905399-4	chr15	77904860	77905860	+	778.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23634.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	2.37590845520887	2.50514700028045	2.71190604135922	2.37536314651438	2.45349177993287	2.41419885119571	-0.715314873176118	0.384245813499372	1
Merged-chr6-87849895-4	chr6	87849414	87850414	+	837.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355195, intron 1 of 4)	intron (NM_001355195, intron 1 of 4)	1192.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	7.0788346358462	7.33874133902906	7.14601336906612	7.14484141093412	7.30705660728206	6.9628489029107	-0.0604668095944915	0.810635059253215	0.955079786589595
Merged-chr4-116669486-3	chr4	116668987	116669987	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16112.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	5.26507050030028	5.15588657614115	5.71215579292196	5.45587016016694	5.2385001219659	5.74937269213706	0.192268236960182	0.615596144894389	0.888073730124794
Merged-chr5-140646940-2	chr5	140646440	140647440	+	780.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	2091.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	2.82622242864275	2.72144141920744	2.60379705277101	2.81683909818103	2.84401893052255	2.86991829764929	0.610394320643201	0.406347517518183	0.780646569949505
Merged-chr7-19686212-2	chr7	19685712	19686712	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4752.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	3.31126747168514	3.25662627874364	3.50915771838713	3.40813002874958	3.3357621187761	3.47403161138795	0.181936255758875	0.761240968733678	0.94117989422274
Merged-chr13-111977960-4	chr13	111977494	111978494	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	110058.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.92221389174335	5.79969307855058	5.69574367764956	4.89526148961732	4.90750692668838	4.845777706264	-1.84926631506604	1.57026365249204e-07	1.06312854350332e-05
Merged-chr2-32961057-2	chr2	32960557	32961557	+	928.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	198.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	6.98572128742945	6.90401533682334	6.42167031454356	6.86889844585752	7.01291962564696	5.80441127966187	-0.203306454395204	0.761194203496473	0.941152913528252
Merged-chr1-127257203-4	chr1	127256687	127257687	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	MER77B|LTR|ERVL	52201.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.90018478757089	3.91943793097468	3.86042029820244	3.57217608223564	3.49511262463445	3.56113269125495	-1.21459518394265	0.0256792876990857	0.189953071060324
Merged-chr13-23751107-4	chr13	23750613	23751613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175660)	promoter-TSS (NM_175660)	25.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	6.95277889751835	7.45366433990992	7.10014572484559	7.1614527729852	7.68296242356763	7.3385503691493	0.338352411531605	0.233580208190722	0.629836294896575
Merged-chr8-25080461-1	chr8	25079961	25080961	+	680.0	f0_balb.idr	intron (NM_031257, intron 2 of 11)	ORR1D1-int|LTR|ERVL-MaLR	21350.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	4.22186392989411	4.00960098088586	4.19058139770701	4.00185526820555	4.19705627078636	4.46723863427882	0.240639825937198	0.62279458279793	0.891249034616027
Merged-chr9-114390353-6	chr9	114389731	114390731	+	864.0793460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019922, exon 1 of 7)	exon (NM_019922, exon 1 of 7)	481.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	3.91549698317151	4.11226471376658	3.93287435256726	4.02248713963285	3.44728902549256	4.27258216102459	-0.10160881915444	0.864243500162869	0.968269312109804
Merged-chr5-100441297-2	chr5	100440797	100441797	+	864.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172714)	TTS (NM_172714)	-11762.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	4.34346985056527	4.40336215839209	4.57062985984842	5.20703760974224	5.19227545457108	4.88178780611644	1.56148684273296	0.000126043895164851	0.00344768587405552
Merged-chr9-44398229-2	chr9	44397729	44398729	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008063)	promoter-TSS (NM_008063)	53.0	NM_008063	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	3.83983548212498	3.69514631866819	3.91917012964457	3.91722630580374	3.46671135832732	3.94037970102836	-0.103963483218957	0.853852329473476	0.965850084130104
Merged-chr14-46864576-2	chr14	46864076	46865076	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18389.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.79919739008312	4.28352798421953	4.18837730281208	4.71308782974929	4.59836217138634	4.79384958371229	1.53315460572275	0.00157641164329202	0.0257095374392478
Merged-chr13-34188511-5	chr13	34188052	34189052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	25588.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	7.52187875732155	7.05542483733396	6.29467070938507	7.15104066932202	7.30326671429046	6.56974539517375	-0.0146740823460935	0.981330547169111	0.995690081075595
Merged-chr19-32637443-4	chr19	32636934	32637934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360403, intron 3 of 11)	intron (NM_001360403, intron 3 of 11)	17429.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	6.87039880936285	6.85459344783903	6.59122111914783	7.12791592113345	7.16321430072369	6.52009100426795	0.303055342766642	0.304950624880076	0.701230797737315
Merged-chr6-43349050-3	chr6	43348599	43349599	+	926.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 8 of 8)	Lx8|LINE|L1	-39545.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	4.3646001748611	4.43680742927771	4.45135400096154	4.05104763972638	4.19129053754209	4.39328603405023	-0.54578915046898	0.233581582868042	0.629836294896575
Merged-chr8-84848060-5	chr8	84847517	84848517	+	892.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1086.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	6.85738024022186	6.75899598003707	7.1024764590343	7.01822559636297	7.25031054047043	6.86210935615544	0.239302008381593	0.368498338876872	0.75342526848677
Merged-chr6-33790939-3	chr6	33790440	33791440	+	883.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 11 of 17)	intron (NM_009148, intron 11 of 17)	-238508.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	2.7475116843242	3.17125526441512	2.95557923907895	2.72007962795519	2.69651205726281	3.08549585608542	-0.62667800104801	0.410050689171062	0.783116615634315
Merged-chr7-16057314-4	chr7	16056797	16057797	+	884.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-14548.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.05716738655888	5.17474466037479	5.13626940727887	5.44418325863314	5.71841708186419	5.01726398328781	0.634052498472393	0.0997499127357801	0.421136841555491
Merged-chr6-136807604-2	chr6	136807090	136808090	+	558.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-658.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.52055263231256	4.11120885314726	4.66599601349223	5.37335271683497	5.44431562370799	5.46935559207503	2.2106839523131	1.42887272505588e-07	9.7935454453418e-06
Merged-chr16-37010556-4	chr16	37010040	37011040	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	3.7914231109809	4.01941456314418	3.98748384003112	3.89132477720567	3.9578716722146	4.10217599355479	0.141876248030059	0.778826572699454	0.945528049566317
Merged-chr4-141871638-4	chr4	141871158	141872158	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	MIR3|SINE|MIR	3262.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.91683486428548	8.33444846263945	8.14113241044546	8.26274351614023	8.49489561545998	8.28759785816723	0.297225954403695	0.199811271626626	0.588407790910296
Merged-chr5-72556340-4	chr5	72555840	72556840	+	953.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133921, exon 3 of 23)	exon (NM_133921, exon 3 of 23)	3305.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	5.05952147809952	5.17026593214529	5.56463384292136	5.20415945603093	5.49400067962889	5.52025761409789	0.283959313603936	0.445307675401847	0.805096431670068
Merged-chr4-148040231-2	chr4	148039731	148040731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-958.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	4.7490494001235	4.93186313696843	4.9468759855555	4.83298416372608	5.6013324470552	5.24927200838132	0.836263608666256	0.0452455267426348	0.268483983896748
Merged-chr5-139726543-7	chr5	139725986	139726986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	ID_B1|SINE|B4	9847.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	7.98523380907708	7.48928287782185	7.38206377545443	7.91438993335189	7.90123706719407	7.36977386439232	0.152233188602061	0.599407063643324	0.880988559193131
Merged-chr4-144981317-4	chr4	144980826	144981826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	88189.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.80462022263401	5.17662454208808	4.64138680715055	4.62213683684043	4.55377732271983	4.2352441694267	-0.966639833777052	0.034069030617557	0.225773805322211
Merged-chr14-43817960-3	chr14	43817474	43818474	+	930.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007894)	TTS (NM_007894)	1665.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	2.72576141297875	2.65367612354459	2.85278816221241	2.76842952510395	2.84016253903836	2.80460082026181	0.332990875397709	0.644132663963233	0.900067122451665
Merged-chr7-127936447-2	chr7	127935947	127936947	+	982.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001319147, exon 8 of 15)	exon (NM_001319147, exon 8 of 15)	-6334.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	3.57533798730721	3.38494936700796	3.67338759325214	3.16273013201664	2.98729191892251	3.26808115085456	-1.70714500627283	0.00885137693520238	0.0924793284812054
Merged-chr5-53929249-2	chr5	53928749	53929749	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69274.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.89400482054845	4.96765856184461	4.98192696251713	4.86417877381116	4.56152099588178	4.9418642414402	-0.35845182921077	0.368066401065286	0.753019820015252
Merged-chr4-129822530-1	chr4	129822030	129823030	+	542.0	f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	1822.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.94773004124227	6.17073793250045	5.8550434195486	6.55614075293821	6.49897425404532	6.08739058538708	0.679541721764676	0.0278294607954274	0.199152570034228
Merged-chr12-36038978-2	chr12	36038478	36039478	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	B1_Mus2|SINE|Alu	3500.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	5.46094463736353	5.63461975700919	5.55696093255816	4.71821805517193	4.97318493267344	4.70184466952914	-1.51596059941287	6.75586443949327e-05	0.00203035684452822
Merged-chr13-49652920-4	chr13	49652413	49653413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073167)	promoter-TSS (NR_073167)	-165.0	NM_001271397	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	6.72217142656262	7.4349335353707	6.98975293222041	7.30142136415802	7.45876771684236	6.839310846893	0.216347119295544	0.493040841272777	0.831208279358962
Merged-chr5-141013575-4	chr5	141013048	141014048	+	975.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12952.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.87251717991257	5.94467754559354	6.22989829678998	5.88636575740464	6.00828841696589	6.25122845162732	0.0611039810369407	0.843812396365183	0.963645026675097
Merged-chr14-33231603-3	chr14	33231088	33232088	+	648.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	14765.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.18483463269883	4.35573803852127	4.56366062799807	3.45448914835094	3.44622833186043	3.86328972526028	-2.55914176652612	1.15343667952566e-05	0.000452140740647897
Merged-chr14-45049844-4	chr14	45049303	45050303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61692.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	7.07470144997655	6.93625693179419	6.89941007228777	6.93243073406799	6.94857153386495	7.16659855182478	0.0585957360117437	0.81297693847389	0.955850910466599
Merged-chr5-62760404-4	chr5	62759909	62760909	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	5768.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	5.86861503380718	5.53754457854175	5.69978264109916	5.7892128715676	5.67300713975075	5.65402164872084	-0.00380411961476838	0.990545719900555	0.997892660866058
Merged-chr17-20945665-1	chr17	20945165	20946165	+	1000.0	f0_c57.idr	intron (NM_016891, intron 1 of 14)	CpG	211.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	7.55483691153341	7.78489455674815	7.45459186154419	7.66155254602716	7.59497447869654	7.54236564165638	-0.0147583615486832	0.949296706941827	0.988171665869286
Merged-chr3-97737333-3	chr3	97736845	97737845	+	940.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30669.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.93584042051369	4.89724892635725	4.7146052821997	4.53170414466628	4.56500185126138	4.33972871831596	-0.868852792805359	0.0383960997507731	0.242586383300101
Merged-chr5-43103219-1	chr5	43102719	43103719	+	746.0	f0_balb.idr	Intergenic	B4A|SINE|B4	-130244.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.20616180634598	3.09475233409448	3.11065706134508	3.04813625515296	2.76331773767211	2.87715429534938	-1.13626312481923	0.105127097034614	0.432612042040364
Merged-chr15-78928269-4	chr15	78927784	78928784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008495, intron 2 of 3)	intron (NM_008495, intron 2 of 3)	1559.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	6.17009187848328	6.22884556512985	6.25011213761897	5.45820420038342	5.35958982851208	5.50003061001417	-1.40793436631863	3.75706583080303e-06	0.000172336236851962
Merged-chr14-8132092-2	chr14	8131592	8132592	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 4 of 19)	(TG)n|Simple_repeat|Simple_repeat	33881.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	3.71590193742512	3.32166552410226	3.78414324464424	3.57465028639076	3.4193888946379	3.85262550887847	0.00707161470818592	0.990712868136652	0.997993200226565
Merged-chr5-151369581-2	chr5	151369081	151370081	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045700, intron 1 of 3)	intron (NR_045700, intron 1 of 3)	906.0	NR_045699	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	6.27961387941751	6.6903807140411	6.5011300932736	6.78341343515595	6.96706926374864	6.82184362438668	0.566428762690036	0.0385429839130386	0.243237361049383
Merged-chr1-173599226-1	chr1	173598726	173599726	+	565.0	f0_c57.idr	promoter-TSS (NM_001177349)	promoter-TSS (NM_001177349)	48.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	3.44742509957954	3.14591380009309	3.48975987368578	4.68280244335629	4.50415495716982	4.31733485123401	4.23516953525611	1.74003173253934e-09	1.83503878835404e-07
Merged-chr4-126250611-3	chr4	126250081	126251081	+	809.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	5738.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	4.64835405031351	4.40695673071198	4.65913370432878	4.56505111461419	4.37195141424514	4.79819489899547	0.0135606331449132	0.975380067171995	0.994454548709104
Merged-chr11-120599502-1	chr11	120599002	120600002	+	732.0	f1_balb.idr	intron (NM_001038230, intron 2 of 2)	B1_Mus1|SINE|Alu	970.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	4.06067491821348	3.67793642404279	3.72385127132136	3.50463534201572	4.06700618209595	3.79495162796857	-0.0580972202092024	0.921459370880839	0.982542868764899
Merged-chr4-66826503-4	chr4	66825987	66826987	+	857.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.4467316818951	5.4867930728847	4.95720075946072	5.24329143274257	5.25228084453144	4.81663520540262	-0.401302465099193	0.318629882476544	0.712586480386753
Merged-chr11-95416173-4	chr11	95415677	95416677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2094.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	7.49250146731202	7.44746654418285	7.2783746647982	7.72881196456827	8.01724372710673	7.90670469745345	0.690645673908824	0.00284697012393103	0.0404526451625773
Merged-chr10-81297295-4	chr10	81296782	81297782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	4319.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	8.46516692429888	8.58570636231465	8.27203660486214	8.05164424761918	8.30954916547149	7.94450216653529	-0.466433719207505	0.043276406653162	0.261221125877309
Merged-chr8-69985347-4	chr8	69984829	69985829	+	694.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	-10946.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.7368079119943	3.53806629970469	3.97949304771762	3.85550617378806	3.60893326774918	3.81040784334126	0.0103333184914362	0.985221917383183	0.996873682039026
Merged-chr2-120431681-2	chr2	120431181	120432181	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 10 of 23)	RSINE1|SINE|B4	-27565.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	5.24284906857048	5.16041896904024	5.21968150862879	5.14992114538157	5.24432762622442	5.34518129931747	0.0771305558200873	0.82498704678402	0.95862923400744
Merged-chr2-73456242-2	chr2	73455742	73456742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	PB1D7|SINE|Alu	-2353.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.40063212198764	6.17568134200228	6.02053355931159	6.30929395212824	6.43689030331192	6.34067996910447	0.245756326617762	0.391968058280893	0.770782330002482
Merged-chr14-25482564-2	chr14	25482064	25483064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	23379.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.3481115680488	5.13196165301639	5.52661575931146	4.8959696868406	4.95951859476487	5.15165449388653	-0.696333815076099	0.0621528539920626	0.323873664514751
Merged-chr7-127840904-2	chr7	127840404	127841404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-904.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	8.32942797478999	8.63831147443316	8.15823850443338	8.34080831052793	8.61533646039629	8.2274730314074	0.0192092471249511	0.937521260525171	0.986057836872162
Merged-chr5-43180625-4	chr5	43180115	43181115	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-52848.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.09798666824376	5.69381956493428	5.47101448400188	5.41503113978884	5.25062153906508	4.92184361098139	-0.447285429646493	0.260259277002247	0.657649400461384
Merged-chr15-59680275-2	chr15	59679775	59680775	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31621.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.34033819441773	7.2865624790773	7.02632552857416	7.25959813407473	7.38704907044054	7.04287098175638	0.0207874234505712	0.934427296290341	0.985707838096286
Merged-chr2-166977745-4	chr2	166977269	166978269	+	816.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-13052.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	5.54473680047863	5.7996751108381	5.593803994403	6.04386734394937	5.9632357715968	5.65707866249464	0.452788827572585	0.162079346146674	0.535361765478641
Merged-chr2-160148929-2	chr2	160148429	160149429	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132276.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	3.49586302324387	3.71149549259123	4.18688461244677	3.54591804001786	3.55478702293991	4.00341278999955	-0.354142910313202	0.563849114199059	0.865992481769395
Merged-chr5-91961111-4	chr5	91960619	91961619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	1437.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	6.13508619576063	5.91290746150131	6.01396378347198	6.50343505850364	6.46346733602725	6.25167157299143	0.657536519992018	0.021185278825532	0.167756440856002
Merged-chr14-68598163-4	chr14	68597670	68598670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16098.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	5.86587229570527	5.99347962354122	6.08837403878282	5.43181892058059	5.63640247707029	5.56583299902164	-0.778035048022464	0.0134985082465802	0.123671424155632
Merged-chr13-55362779-4	chr13	55362287	55363287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025828)	promoter-TSS (NM_025828)	-4.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	7.87993084575477	8.23710174162937	7.89267057118403	7.77288023757871	7.93968291954701	7.83503630817523	-0.236108480189283	0.310513462007692	0.705856787750202
Merged-chr5-54029919-2	chr5	54029419	54030419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	ERVL-B4-int|LTR|ERVL	31396.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.19054996933553	3.24357123141022	3.42859054582487	3.07176812408248	3.19512183699676	3.16928019917385	-0.579473835732198	0.363075749719299	0.748626117770869
Merged-chr9-90270603-7	chr9	90270140	90271140	+	970.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 1 of 13)	exon (NM_194334, exon 1 of 13)	129.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.10549108496135	7.66266920573239	7.62264026286337	7.71198284414136	7.70118815877005	7.84041631944179	0.383209809742925	0.140874972582248	0.501472715235238
Merged-chr14-30641916-4	chr14	30641402	30642402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12473.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	3.49213271863813	3.04596143482701	3.39159058914954	3.42057621025172	3.20740449445907	3.23499390922263	-0.128232457053328	0.844151119518725	0.963711687630021
Merged-chr4-142023412-4	chr4	142022938	142023938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	5540.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	5.40354862065482	5.32059280980877	6.00128605763534	5.69218612772159	6.0473508783777	5.76245720854077	0.458124541084133	0.214135291254194	0.60736873856964
Merged-chr1-131080126-2	chr1	131079662	131080662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	17681.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.33322393857479	3.40579140934032	3.55224292230157	3.18780146088682	3.23394835712986	3.51984708879931	-0.446843220955722	0.468594355774251	0.818673566064062
Merged-chr9-44482711-4	chr9	44482205	44483205	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-120.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.56853191754272	5.15655661521725	5.73018909017999	5.82967689881043	5.44625620745063	5.63763381701437	0.27490753868512	0.450567780801661	0.808443910792592
Merged-chr17-28967291-4	chr17	28966783	28967783	+	894.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356299, exon 7 of 7)	3' UTR (NM_001356299, exon 7 of 7)	14067.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	4.56589781140543	4.56715729933295	4.42757972063514	4.28195491961521	4.26061614869521	4.3169417415717	-0.6275767530776	0.150969155764231	0.5182047532504
Merged-chr3-21468202-4	chr3	21467682	21468682	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-608470.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.53867864756729	2.43248617772139	2.70180778393917	2.41352331861988	2.26412677398382	2.40162188113475	-1.27866659433379	0.127312733107798	1
Merged-chr5-85916050-2	chr5	85915550	85916550	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	149533.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	3.7100187521192	3.77354283378723	3.45763613102231	3.66086815896781	3.66399586969602	3.8020041443625	0.14959889094723	0.789098891252391	0.949103962283165
Merged-chr7-4151410-3	chr7	4150919	4151919	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021454, exon 3 of 3)	exon (NM_021454, exon 3 of 3)	-1547.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	4.78850055791223	4.59569188914528	4.59382970446143	4.45458399484315	4.36783994101644	4.40332310867655	-0.640078143529348	0.131905498936385	0.485688678444938
Merged-chr10-8010110-4	chr10	8009603	8010603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53980.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.14963628253793	5.68519298111559	5.61522861751444	5.36959715029128	5.10673473400076	5.5948926933991	-0.912245305724889	0.0130831926627695	0.121389369274906
Merged-chr19-11589383-4	chr19	11588892	11589892	+	942.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	15412.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	5.05673955942321	5.12558810261814	5.18625960414571	4.65959599802647	4.78087316033096	5.18755618424368	-0.514666984255499	0.194534139804727	0.58188211607131
Merged-chr5-136243915-2	chr5	136243415	136244415	+	779.5476070000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302938, intron 1 of 8)	CpG	1025.0	NM_001302939	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	3.46131977861684	3.34772168429182	3.38576134356965	3.26087556421787	3.13079486120502	3.16824368466207	-0.874275871426079	0.158300358195387	0.530011918747857
Merged-chr8-26104685-4	chr8	26104183	26105183	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207659, intron 2 of 21)	intron (NM_207659, intron 2 of 21)	14541.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	6.11840577652512	6.38319612248381	6.23752939803034	6.31935735356029	6.60696725512579	6.54092883673092	0.399737932460583	0.157279720337788	0.528465957432832
Merged-chr11-53794993-4	chr11	53794508	53795508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24535.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	7.78715693538726	7.48612862029607	7.78078392958451	7.81505816302528	7.82957943746321	7.49200640691471	0.0556411628674228	0.81877036288058	0.95707243698819
Merged-chr7-43343352-4	chr7	43342856	43343856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	2.90676015466102	3.01069108283428	3.10510675029534	3.0423852773191	2.86910823315873	3.11990836609078	0.0106495715108256	0.987474536315129	0.997218304929226
Merged-chr17-45766705-4	chr17	45766206	45767206	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32200.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.95169251713755	5.29432203629584	5.15249115681156	4.79581799161363	4.27641882162689	4.83811127866383	-1.09906325149357	0.0114712732497578	0.110782463389723
Merged-chr7-30508251-4	chr7	30507748	30508748	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019546, intron 7 of 9)	intron (NM_019546, intron 7 of 9)	-6874.0	NR_036630	100504207.0	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	3.15167258425157	3.13971675129414	3.09930352845605	3.52857628534215	3.74957131571103	3.68671748881288	2.11434710740968	0.000858249749386253	0.016001175251385
Merged-chr8-117335267-2	chr8	117334767	117335767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-13903.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	2.96668501732758	2.98085517760642	3.34828160983116	3.11404742337588	2.77511291564781	3.09265767326721	-0.472728868485634	0.507260512021704	0.838904804247997
Merged-chr9-32472517-4	chr9	32472026	32473026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	Lx8|LINE|L1	68926.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.43056357348997	5.25380893573357	5.53998322903693	5.18070787808804	4.94787702327336	5.37960387523981	-0.481831294868543	0.188743805934223	0.574222837446979
Merged-chr6-57542197-4	chr6	57541696	57542696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-6770.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	3.73722638924868	3.55978031212143	4.07051835178326	4.06800540846602	3.79368822368227	4.04823259882029	0.54491275014249	0.321877332201774	0.71531352646347
Merged-chr2-13272978-4	chr2	13272473	13273473	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	4.02238647521745	4.05505214150013	4.02409127415448	4.3087068631972	4.01475635409685	4.04422609329076	0.27267512122281	0.575987598024834	0.871496930818991
Merged-chr4-46390670-4	chr4	46390160	46391160	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	5.58456166432757	5.42001560778701	5.25706986449763	5.76174658032973	5.61271935061305	5.6284423601111	0.436251457625301	0.189730459588141	0.575767774402458
Merged-chr16-17406723-4	chr16	17406252	17407252	+	746.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001983)	promoter-TSS (NM_001001983)	-438.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	6.81487478499524	7.1740612675156	7.00943182899984	6.98020701746055	7.17753364325803	6.60078475972919	-0.0837239156360601	0.768749020699615	0.94293775541922
Merged-chr14-55884940-4	chr14	55884440	55885440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019820)	promoter-TSS (NM_019820)	-2.0	NM_027143	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	7.16668965001793	6.93528833155212	7.03708243391756	7.05482139069299	6.90789082035439	7.10767387748808	-0.045218246775182	0.854516320240737	0.965987623019113
Merged-chr7-100461793-4	chr7	100461294	100462294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-11197.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	7.58587679185575	7.45431672366782	7.68577828003535	7.17952538930563	7.21861853000702	7.45440217940034	-0.428988523646685	0.0705236788030889	0.348051683748595
Merged-chr17-66221409-4	chr17	66220908	66221908	+	869.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	97888.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	3.36949107839776	3.57780699272273	3.63767510544835	3.70909342109921	3.51711454353327	3.49236432404596	0.170024300441696	0.768260219220205	0.942864224975033
Merged-chr4-32268099-4	chr4	32267598	32268598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149337.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.45049653691073	4.61518724258884	4.54623414295978	4.28464341419114	4.51023917692697	4.35500329491455	-0.367064206492502	0.401775391051235	0.777753227258936
Merged-chr13-54789236-4	chr13	54788721	54789721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028841)	promoter-TSS (NM_028841)	-184.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	4.61367795618855	4.06487612095174	4.59946182523775	4.21938113006738	4.03917379935999	4.62746111158277	-0.353678587074561	0.493065426012512	0.831208279358962
Merged-chr15-87108417-4	chr15	87107932	87108932	+	775.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-435867.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.92610200952175	2.94424783657242	3.12579861288501	2.92964184573529	3.08405084936345	3.19679190050604	0.343194154508225	0.610190330286922	0.885445198275406
Merged-chr1-142468481-3	chr1	142467974	142468974	+	994.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1172223.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	3.80192311762287	4.09739729651502	3.80701644138671	3.65396267245692	3.58067064906317	3.72027393644812	-0.878856207515265	0.105338732861621	0.433247258363391
Merged-chr11-70596631-2	chr11	70596131	70597131	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	B3|SINE|B2	-19263.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	6.57868873436444	6.54702152028667	6.46823194230927	6.19524653385697	6.40034449978501	6.31968130877481	-0.364560548190387	0.175669292822999	0.555698392534067
Merged-chr6-85306732-3	chr6	85306232	85307232	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 2 of 13)	MTD|LTR|ERVL-MaLR	26690.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	3.46965655096814	3.66453834432179	3.42282355369717	3.17227215188963	3.3976672695796	3.32264793544327	-0.854182505982024	0.165223352489764	0.54001097346129
Merged-chr5-17816358-3	chr5	17815857	17816857	+	928.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	19539.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.68934784504337	3.77332552605877	3.49478266906723	3.48237663749866	3.71901853340103	3.72939892265029	-0.0520752893716441	0.926803727995944	0.983578869536024
Merged-chr15-98483584-2	chr15	98483084	98484084	+	719.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010679)	promoter-TSS (NM_010679)	-901.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	6.63740700082282	6.52875101043587	6.19542881484346	6.22970283319002	6.54518326276533	6.07237130763351	-0.268891377132772	0.383419062855271	0.764889316280541
Merged-chr17-31110444-4	chr17	31109932	31110932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 11 of 14)	ORR1E|LTR|ERVL-MaLR	19179.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	4.94755440112769	4.56961152319559	4.93621326748791	4.5720222183961	4.52409079065043	4.86156000542065	-0.404248018410824	0.342891383296353	0.731790413709574
Merged-chr17-36121560-4	chr17	36121058	36122058	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046286)	promoter-TSS (NR_046286)	-114.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	5.23020731679424	5.46295335544585	4.98051644754347	7.66123215900271	7.821014595103	6.94923722399888	3.90907515853709	2.6527618648706e-06	0.000127484815596102
Merged-chr8-119836892-5	chr8	119836395	119837395	+	801.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	3684.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.13893825707942	3.99600194676074	4.14414862825315	4.05522840686328	3.9422401442702	4.02435792584755	-0.255786916343549	0.597928172806669	0.880492573527298
Merged-chr17-17617568-2	chr17	17617064	17618064	+	792.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	6925.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.01076939308487	5.19401001613887	5.02092111264184	5.59542034287318	5.80864295849049	5.7050326048615	1.21881986754034	0.000385801229866605	0.00855134489470976
Merged-chr1-134420332-4	chr1	134419873	134420873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	4709.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	6.5428330098027	6.59320463593813	6.6829071231316	6.4715313019409	6.38827211344198	6.59709806422371	-0.196986235489089	0.453435348675999	0.809761744660326
Merged-chr17-27700091-3	chr17	27699606	27700606	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178365, intron 1 of 9)	MTD|LTR|ERVL-MaLR	14867.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	4.41248331138773	4.51919584705022	4.83971910229552	5.08065410271845	4.87287250626717	4.75426452097087	0.744416459036713	0.0765372296763615	0.364316766331941
Merged-chr10-81060302-4	chr10	81059803	81060803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024499)	promoter-TSS (NM_024499)	-32.0	NM_024499	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	7.47888658120229	7.29589462852097	6.8061181197332	7.26307799291082	7.44377012605055	6.86504643874092	-0.016878873322779	0.955507303058582	0.989763164889919
Merged-chr2-167920113-4	chr2	167919634	167920634	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.31334648343039	4.07344618089278	4.20615589306889	4.00444875025539	3.81259910162706	4.04200765088831	-0.73786437761462	0.135202065039885	0.491304630441033
Merged-chr4-55530343-4	chr4	55529842	55530842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010637, exon 3 of 5)	exon (NM_010637, exon 3 of 5)	2133.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.9238780282253	4.96660517628345	4.67221199249412	4.75624707904515	4.48596383731637	4.52422543463923	-0.641071655351122	0.12258704152136	0.46841580413801
Merged-chr17-15774121-4	chr17	15773606	15774606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52480.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.34621990579783	4.15788867818905	4.26055201494541	4.42966852979922	4.68546633164555	4.23414485199052	0.569138344936258	0.22091892381108	0.61561513090473
Merged-chr13-91037501-3	chr13	91036992	91037992	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 4 of 7)	PB1D7|SINE|Alu	114370.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	3.1145708804872	2.93764934233225	3.40344886515801	2.88940898214163	3.02248787088213	3.31941855776133	-0.325456000992587	0.644578618465331	0.900287351502017
Merged-chr5-31881689-2	chr5	31881189	31882189	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	183639.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.19300249364043	5.95079019716009	6.14855560970903	5.78416485845509	6.00166490082887	6.34346450530465	-0.0771235578223081	0.807939496747048	0.954583809755663
Merged-chr2-52901046-4	chr2	52900537	52901537	+	775.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	Lx8|LINE|L1	43169.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.34501131578194	4.31878041738338	4.65196452175049	4.26946340055989	4.05540993115421	4.68052060412148	-0.234525516807729	0.63289322062861	0.895781348284166
Merged-chr6-83029412-2	chr6	83028912	83029912	+	580.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4059.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.50228175233826	5.48948096948088	5.10728442807577	5.33756632376166	5.18872801218528	4.9840313098062	-0.409578319946402	0.269858525922968	0.666905044122659
Merged-chr5-73293730-3	chr5	73293170	73294170	+	762.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023429, intron 1 of 8)	intron (NM_023429, intron 1 of 8)	876.0	NM_001159888	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	5.58295199030113	6.05836444793417	5.3321154614087	5.93493350324133	6.20759210522683	5.8475335007068	0.535253157974189	0.142844224054225	0.504499448747873
Merged-chr2-129539350-3	chr2	129538860	129539860	+	828.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.78719256130477	3.39501583199845	3.53370389680656	4.20539091057752	4.36591904548041	3.94759570480337	1.91607009712337	0.000876830791263344	0.0162746679632925
Merged-chr11-87039478-4	chr11	87038966	87039966	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 7 of 9)	B4A|SINE|B4	34671.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	6.00228326804389	6.12138877082388	6.16671741889246	5.97469396724367	5.82793508033573	6.0350584412332	-0.267357856768452	0.361613363221724	0.747458707295016
Merged-chr14-70914538-3	chr14	70914068	70915068	+	907.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 2 of 7)	intron (NM_001302094, intron 2 of 7)	24461.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.07617517923711	4.30711810487555	3.95718593067846	3.92025296610683	4.08603365909854	3.9762164548466	-0.375702560941213	0.453581669031429	0.809836570182111
Merged-chr7-78865047-4	chr7	78864539	78865539	+	953.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17828.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	3.85382781369413	3.8951005633342	3.98668723098237	3.9157750229835	3.84271013943824	3.85927479997816	-0.115151371629883	0.819704637192725	0.957288083214325
Merged-chr17-45686309-4	chr17	45685790	45686790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	-59.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	7.64559340805832	7.41639546269038	7.19289581679102	7.7480151722292	7.88410005490237	7.37197177409196	0.371579874198637	0.16355564415263	0.537570628798073
Merged-chr9-79759791-4	chr9	79759314	79760314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	39.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	7.24074392937885	7.395972191776	7.31741350742849	7.29204565425955	7.33469898739836	7.35258218727496	0.00869968583257732	0.96957944481551	0.993187203841286
Merged-chr14-46885520-2	chr14	46885020	46886020	+	787.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	2555.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.43534141071383	5.25717851763833	5.10984168133507	5.38654505587188	5.55979939326192	5.6871436503308	0.5095950235722	0.144786608904441	0.507643862873788
Merged-chr4-134129662-4	chr4	134129161	134130161	+	690.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-908.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	4.62810052322104	4.82361817999831	5.22046309673972	5.38387085756944	5.61788138883259	5.34611348076816	1.15853901326462	0.00303440529983065	0.0424685605406993
Merged-chr4-99224475-4	chr4	99223990	99224990	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145967, exon 7 of 11)	exon (NM_001145967, exon 7 of 11)	30343.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.62995012219624	7.12972830121522	6.61459431688089	7.2264782760578	7.28908066846541	6.871703302501	0.494291948639941	0.09141518060943	0.40248025547116
Merged-chr4-149820216-2	chr4	149819716	149820716	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-45949.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.60806802512302	3.07447602058047	2.92105412248445	2.57593767704035	2.49875966621289	2.62353836492884	-1.79453543683355	0.0273422984207478	0.197063487829674
Merged-chr12-33156502-4	chr12	33155989	33156989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	ID4_|SINE|ID	8803.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.46276693935352	6.43824890414638	6.58208069219524	6.75200159010664	6.64707527462703	6.7980258975471	0.379810457124712	0.140482764653388	0.500762107753037
Merged-chr17-5573222-4	chr17	5572748	5573748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	X7A_LINE|LINE|CR1	80648.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.03411854352108	8.28460036653696	7.89056636372721	8.04650079042311	8.49568852342181	7.51961391152757	0.0140866656907847	0.962973339526533	0.991018409557203
Merged-chr2-58480944-4	chr2	58480434	58481434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	80476.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	5.23571983083138	5.37883978491462	5.35345693305786	4.99258398152139	5.26890742932256	5.58229474111988	-0.0571398424381767	0.877680442097347	0.971699698312014
Merged-chr14-79555456-2	chr14	79554956	79555956	+	621.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	(A)n|Simple_repeat|Simple_repeat	-32204.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	4.11056777657716	3.79082512631199	4.3129734232367	4.15730481529653	4.06798454095333	4.20845075256935	0.178853234526387	0.724098543156525	0.92918571470947
Merged-chr9-66295133-3	chr9	66294633	66295633	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55317.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	2.81685910195717	2.90072652488648	3.04876184489906	2.98765395253131	2.75840859390754	3.12035401399892	0.171350162282283	0.808930462823718	0.954721853010197
Merged-chr17-50993817-4	chr17	50993308	50994308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	165570.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	7.60655225920252	7.92489878311612	7.65814750797139	7.74343245935567	7.91922820223684	7.61056290548742	0.0417494916983507	0.861148859876608	0.967789299492425
Merged-chr10-25321345-4	chr10	25320839	25321839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-22176.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.70423527075878	4.30712573868433	4.31470375261078	4.38044626287428	4.28874029163004	4.19234782709433	-0.440223933621947	0.345299682426932	0.733676961611706
Merged-chr1-13660610-4	chr1	13660114	13661114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145381)	promoter-TSS (NM_145381)	-105.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	8.1634138648643	8.66377695801201	7.88355252846416	8.19091033234864	8.47215316508881	8.0045024292686	-0.0624251368322301	0.826467860020865	0.959132530412348
Merged-chr2-60883119-4	chr2	60882607	60883607	+	725.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1669.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.59157103303906	4.44367786239631	4.66042617187668	4.70849534241759	4.70383297655248	4.72627088041046	0.358747668233158	0.380116551179679	0.762308048682461
Merged-chr16-70387545-3	chr16	70387052	70388052	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	73603.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.84840863316498	2.8403943380889	2.89932485860334	3.24376159469001	2.99557798489484	3.03494507573158	1.11098401137646	0.106280278319559	0.43523050445773
Merged-chr2-127398266-4	chr2	127397762	127398762	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26937.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	5.97304374870113	5.6751440713299	5.86163827034888	6.39588716408808	6.46502133797018	6.22172847868936	0.903644097621238	0.00223636545128035	0.0336315735532505
Merged-chr6-89422767-4	chr6	89422276	89423276	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-60163.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.66348943157118	4.11643862857628	4.39161435039499	4.64034561009394	4.61685979441737	4.45998299045877	0.410297819016423	0.376510466816253	0.759284451214457
Merged-chr10-77624579-2	chr10	77624079	77625079	+	943.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	MLT1C|LTR|ERVL-MaLR	2258.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	4.60169166493909	4.16271988858176	4.72913470800093	4.31234812683559	4.34225403332287	4.26693485434391	-0.519277079726271	0.273235505052734	0.670483530009026
Merged-chr2-163619315-2	chr2	163618815	163619815	+	816.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_181734)	TTS (NM_181734)	12103.0	NM_001305803	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	2.39238084598293	2.35939991682064	2.79985061534496	2.39311538815598	2.35321147479699	2.69991148808594	-0.235790487800059	0.781684380294753	1
Merged-chr10-25058891-4	chr10	25058389	25059389	+	660.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131419.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	2.41076767424109	2.1662160299658	2.29294393265908	2.45677651359316	2.23406824387834	2.49830415396243	0.671900079792376	0.437454345475972	1
Merged-chr1-86066946-3	chr1	86066431	86067431	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027357, intron 1 of 24)	intron (NM_027357, intron 1 of 24)	2312.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	4.3844772806808	4.29817767195874	4.23299715337001	4.69685491331564	4.37796001552811	4.30263274617163	0.419733569609013	0.357249890386822	0.7438765015717
Merged-chr3-28007855-3	chr3	28007364	28008364	+	735.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	23693.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	2.94301054230863	2.83229065576369	2.89272181136249	3.01289679843051	2.83791027152583	3.30499414716544	0.783657061334045	0.269304997158607	0.666438561847887
Merged-chr4-135312947-2	chr4	135312447	135313447	+	819.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40187.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.43409896553013	5.16710893792752	5.0729823424391	4.98126870289199	5.05522564036126	4.7920889997523	-0.593388484766782	0.120805504188855	0.464893155207108
Merged-chr12-73612763-2	chr12	73612257	73613257	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	27961.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.60629548521008	4.49537541247942	4.34159137357826	4.44744036671145	4.58503167531254	4.36392835005462	-0.039526256649472	0.928147593035668	0.983802612059568
Merged-chr6-113630486-4	chr6	113629969	113630969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	6448.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	6.34317747014634	6.37096060206823	6.35015920505688	6.25023915987434	6.55405836064259	6.24978485584667	0.0257286930032692	0.926896064193902	0.983578869536024
Merged-chr16-23606896-2	chr16	23606396	23607396	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-3023.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	3.27447585466762	2.99103601763492	3.12220114282992	3.0703961653948	2.7836763304278	3.35948192479732	-0.201705985780802	0.779339452550024	0.945710994231145
Merged-chr9-85588271-4	chr9	85587777	85588777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161057.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.45905540941804	4.33273234788518	4.2728354522007	4.53838313760199	4.56711395413452	4.47697630684352	0.428583528652817	0.322498369622207	0.71597252417707
Merged-chr10-53630117-4	chr10	53629586	53630586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027830, exon 2 of 14)	exon (NM_027830, exon 2 of 14)	353.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	7.10702683857389	6.9185929910065	6.67145966983926	7.2427363370363	7.0505969912663	6.82911042888598	0.208916284140373	0.444285780506534	0.804143628616024
Merged-chr2-173768406-2	chr2	173767906	173768906	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	30835.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	4.92716952050262	4.81020387677878	4.85895006742094	5.04210651983047	4.84173658742679	4.92446036677677	0.153414070265888	0.687826999448818	0.917193226920892
Merged-chr13-112396759-4	chr13	112396242	112397242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67328.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.06905583677554	5.45465504817659	5.44200089739409	5.65956466601815	5.64899238510752	5.97816761819462	0.115986509635749	0.753389354721751	0.938549578325581
Merged-chr10-87841774-4	chr10	87841282	87842282	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16483.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.42812872529426	7.05452169482775	7.29784545257715	7.38628412052962	7.37012324272365	7.05815172660329	0.0276485633442783	0.914308105625688	0.980912729144991
Merged-chr1-54690720-2	chr1	54690225	54691225	+	682.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-133041.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.63118282973109	3.32891555072007	3.5450578906334	3.22211277359239	2.96084610664568	3.10457513560605	-1.73694023067237	0.00903787077655629	0.0938269683812471
Merged-chr8-69715489-2	chr8	69714976	69715976	+	752.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039967, intron 1 of 5)	intron (NM_001039967, intron 1 of 5)	1426.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	4.13762195276322	4.1053846693638	4.10368436648896	4.50782501746744	4.29473170675065	4.44434975980117	0.806197990096893	0.0782674339112869	0.369397427163379
Merged-chr15-100674060-4	chr15	100673573	100674573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033612)	TTS (NM_033612)	-4573.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	6.03153014546662	5.84830112691304	5.8161694594239	6.06495870020054	6.28093070295209	5.95380115047766	0.364962010694239	0.229167658009563	0.624625428681258
Merged-chr13-99327586-4	chr13	99327043	99328043	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	17135.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.48559871728256	5.59331414211061	5.49631009278239	5.86075189643456	5.79290168510416	5.5597449028828	0.413449335394818	0.198379535349671	0.586719427645391
Merged-chr13-18794642-4	chr13	18794143	18795143	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77351.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	5.53560745997283	5.45249111848705	5.23515540063703	5.42146835175788	5.58169165324897	5.39768276563479	0.102104254346475	0.764362893365714	0.941979298344481
Merged-chr10-62543680-4	chr10	62543172	62544172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16227.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.03116582283667	6.92695119777995	7.0491800606204	6.66554296334067	6.54994958507031	6.95091713986944	-0.433782468907664	0.0970289205340732	0.41537183823631
Merged-chr11-29806516-3	chr11	29805998	29806998	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	19170.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.53357950021258	4.49247688999081	4.68206624274899	4.30301405342612	4.27973716323315	4.33998437311502	-0.668354280790107	0.124728943759512	0.472413216456894
Merged-chr11-21452787-4	chr11	21452293	21453293	+	913.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	58387.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	3.91640781700014	3.77162458127096	4.06712621080156	4.03445551932145	3.56970275059526	3.89949834552651	-0.232069530255711	0.67187113376316	0.910694246658612
Merged-chr10-117724469-3	chr10	117723984	117724984	+	886.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13726.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	3.21021505318086	2.78974960257163	3.19561804455688	2.7879177997644	3.05008753428763	3.26652239849324	-0.139125381752735	0.85121274755444	0.965211450762173
Merged-chr7-122466201-3	chr7	122465685	122466685	+	777.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	A-rich|Low_complexity|Low_complexity	177060.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.82863087127177	3.68723736604241	3.62536720836097	3.78027939620733	3.60599601149472	3.9468971306504	0.185596014677229	0.734927726319763	0.932617455907478
Merged-chr2-116914166-4	chr2	116913656	116914656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14004.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.11430819986552	5.9201937988211	5.60910783109217	5.43764786607626	5.43768756385014	5.58621705556206	-0.781140716052948	0.0188930832193049	0.155510502375301
Merged-chr17-47592810-2	chr17	47592310	47593310	+	675.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-657.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.75378880472563	4.74081923480152	4.94069990252026	4.6951469912106	4.69439815744846	4.97070031080209	-0.0555430584164759	0.889718030566862	0.974307206100251
Merged-chr10-26836738-4	chr10	26836302	26837302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	64290.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.63520856698909	4.46931736501266	4.69948809353083	4.31812289383604	4.23188896688861	4.76421225422078	-0.385992137557221	0.399581339393856	0.7759607003427
Merged-chr7-123371177-4	chr7	123370672	123371672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1257.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	8.13870794600666	8.51764845148736	8.17009165847866	8.17904688351181	8.54990775313573	8.32180146997087	0.100321668107299	0.675114532373793	0.912004708332796
Merged-chr10-79794682-2	chr10	79794182	79795182	+	613.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	intron (NM_023128, intron 1 of 8)	1110.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	2.29883949542607	2.2304684082535	2.79727753108038	2.48926161932314	2.37537283950352	2.75586095947785	0.464974726627889	0.603276264165473	0.882544198306255
Merged-chr4-95688341-4	chr4	95687829	95688829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108908.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	4.91310681959463	5.01858659784453	5.05088611975152	5.2925532123376	5.17575947097004	5.18316434757659	0.472457748358114	0.188570715166668	0.574200104939915
Merged-chr4-137370606-4	chr4	137370151	137371151	+	939.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-12892.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	6.69726546599048	6.45249006368358	6.61373562189235	6.85189961415428	6.8847274766051	6.65604851029436	0.342470341190256	0.191223726772927	0.577822466760773
Merged-chr5-34370539-4	chr5	34370029	34371029	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 1 of 20)	CpG	596.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	5.96987699432038	5.76893386932482	5.90834661759729	5.79377410809452	5.51107435533101	5.74828162831189	-0.36382177059543	0.249213328347544	0.646143532974884
Merged-chr4-132422553-4	chr4	132422040	132423040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175306)	promoter-TSS (NM_175306)	-94.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	6.60330791879239	6.94045155187396	6.74330463349044	6.94696508602801	7.00033116753925	6.67137208460914	0.180765940247025	0.501625491817151	0.835833270717604
Merged-chr19-6909653-4	chr19	6909128	6910128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026306)	promoter-TSS (NM_026306)	-70.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	8.987512131614	9.2176650116329	8.77947175531625	8.91361935742714	9.27776679363355	8.85694081771573	0.0318729092768343	0.893456543267853	0.975237866709772
Merged-chr8-86879239-2	chr8	86878739	86879739	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6019.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.16953139175599	4.62268636234115	4.98238468904098	5.02540851746251	4.79902910902943	4.61608926140292	-0.255006971795372	0.552028656738517	0.861546661145201
Merged-chr3-87329971-4	chr3	87329483	87330483	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-27898.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.04968923779223	4.98738756220438	5.12421166139845	6.60926129634878	6.7928227298286	6.54649012402145	2.90931138261475	5.07491595011483e-20	3.37818885101724e-17
Merged-chr4-99928789-4	chr4	99928304	99929304	+	812.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-647.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	5.65913754226226	5.89025183784933	6.00684376425407	5.32602981931527	5.44666436229523	5.4677780893618	-0.816787623115446	0.0129964603944158	0.120895413806433
Merged-chr7-25707728-4	chr7	25707237	25708237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11316.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.50534067176224	7.83274392536526	7.64873512100272	7.74852605219234	7.84507094990891	7.3770611906584	0.0146853984919114	0.953645362910776	0.989446911725587
Merged-chr5-120116962-2	chr5	120116462	120117462	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 1 of 23)	MTD|LTR|ERVL-MaLR	449.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	4.99541290662689	5.13027662327502	5.21703146444614	5.37840396902594	5.30411554527289	4.96475286039425	0.258351797677382	0.486325237662775	0.82778255856488
Merged-chr1-166844763-3	chr1	166844241	166845241	+	683.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154989.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	2.40988725467466	2.1968006433256	2.29473206655263	2.43418954738415	2.58750099665337	2.62872148465862	1.59610455597453	0.0645037444530893	1
Merged-chr4-139308087-4	chr4	139307586	139308586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	2622.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	4.76014730156894	4.61154426084379	4.88899353492294	4.52965270039838	4.60567875483995	4.88380659423153	-0.184399294809775	0.658067368467096	0.904937992416562
Merged-chr11-71863335-3	chr11	71862839	71863839	+	934.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	76783.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	3.77816553914039	3.97909591340356	3.84320253219724	4.04580038145853	3.76565306384746	3.96305005116974	0.164741543987432	0.751143649721618	0.937718261890661
Merged-chr1-54449031-4	chr1	54448500	54449500	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9974.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	4.95307260987264	4.88980049732408	4.68787498760815	4.74541552334112	4.41242987344833	4.79358159138774	-0.474550685905849	0.257398046686588	0.65469146752759
Merged-chr4-130797211-7	chr4	130796712	130797712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	4675.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.49401712309627	8.58617978504049	8.44607163558223	8.46413509710653	8.9342332051262	8.2436470829018	0.108818512666424	0.668855305723197	0.909385924601941
Merged-chr16-57176487-4	chr16	57175996	57176996	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-9164.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	3.72722965063552	3.80191708335861	3.5963017397601	3.62913222768679	3.67209755120517	3.37466688588582	-0.48797035017829	0.397565236112713	0.774485045113678
Merged-chr16-36713596-2	chr16	36713096	36714096	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	19618.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.98002806865747	3.86012296778966	3.92528359762538	4.10457420711036	3.87268252212522	3.89359608733867	0.117092288140559	0.816735271304452	0.956754861188725
Merged-chr17-26113716-2	chr17	26113216	26114216	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021793, intron 1 of 12)	CpG	400.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	5.11773898421388	4.82126985334441	4.67226374168181	4.94412248546793	4.30232118370497	4.47551226529274	-0.654656422106552	0.158404051477857	0.53018842781052
Merged-chr1-184846998-2	chr1	184846498	184847498	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1151.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	3.41108574836566	3.17045211820061	3.33144113982342	3.12292422536571	3.13034309008704	3.17513221057886	-0.696000561157237	0.272502133976724	0.669749152678636
Merged-chr7-19361164-4	chr7	19360653	19361653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-63.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	6.44662556084279	6.25380234338657	6.06984241094602	5.96016945643347	6.52970493401838	6.4545357553664	0.114289204428455	0.719280110515427	0.927760958545461
Merged-chr10-77589434-2	chr10	77588934	77589934	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 2 of 5)	intron (NM_145925, intron 2 of 5)	7779.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	2.55542604755025	2.41755904506734	2.56516647065734	2.28230066578613	2.04505953894962	2.31869291113089	-2.20364081972209	0.0241275477666476	1
Merged-chr6-31357243-2	chr6	31356743	31357743	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41530.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.27222615808015	4.26415086836731	4.47185959575315	4.23547412014654	4.08744801592183	4.04658589666124	-0.565539248602394	0.227337038480715	0.622411030375494
Merged-chr9-115309202-2	chr9	115308690	115309690	+	936.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_024222, intron 1 of 15)	intron (NM_024222, intron 1 of 15)	1231.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	5.68833644844242	5.72680078330086	5.41713996255256	5.98051019537728	5.56611754179867	5.20497301658219	0.0133219542516327	0.971775986326109	0.993783614343214
Merged-chr13-100651151-4	chr13	100650675	100651675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283011)	promoter-TSS (NM_001283011)	-114.0	NM_001283011	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	8.79459755813319	8.75686397409377	8.49255108527404	8.75580616795634	8.72025221388372	8.15472070940995	-0.155135331538419	0.539196858049769	0.855787055365757
Merged-chr8-71469724-1	chr8	71469224	71470224	+	663.0	f0_balb.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	530.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	7.18333792969168	6.8514362848059	6.66890338666712	6.92576768051649	6.91400575306087	6.7112067129177	-0.106703308389144	0.698339330706039	0.920332843065367
Merged-chr10-117144328-3	chr10	117143807	117144807	+	784.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	RSINE1|SINE|B4	4167.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	4.70209601395009	4.7106396192616	4.48074982951315	4.37194733048848	4.48818215536631	4.54814699757852	-0.426119425899334	0.31607276264867	0.71019071166749
Merged-chr7-19006651-4	chr7	19006097	19007097	+	944.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178757, exon 1 of 1)	3' UTR (NM_178757, exon 1 of 1)	2532.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	2.13083120076522	2.19577623612625	2.36320535136152	2.03237226278873	1.96485170118128	2.11553562001782	-1.52859971915935	0.104560615798797	1
Merged-chr2-61593083-4	chr2	61592588	61593588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-9.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	8.86544355720114	9.02971334764352	8.67663928736233	8.71248055975565	8.91067765713372	8.56241872023809	-0.17565690115165	0.431526353030009	0.796911573849146
Merged-chr11-54955419-2	chr11	54954919	54955919	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	B1_Mm|SINE|Alu	7521.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	6.48132759746506	6.47843549292907	6.38939328122913	6.60820572518361	6.83898462987911	6.43002680451097	0.312866832349514	0.254992495536684	0.652024436103169
Merged-chr1-152528391-4	chr1	152527895	152528895	+	809.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 15 of 18)	exon (NM_001346119, exon 15 of 18)	96822.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.75853618874888	6.74188681213677	6.4602869509299	6.65833182210181	6.81423851063471	6.27544094902301	-0.0820388435792022	0.778672422395217	0.945520893795831
Merged-chr7-19631224-2	chr7	19630724	19631724	+	721.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019649)	TTS (NM_019649)	-1786.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	2.9774590295157	2.83202203935359	3.30954038366864	3.03961263361754	2.98356141431575	3.22048915565297	0.147271098249736	0.832994754066681	0.960900298881182
Merged-chr16-21642237-4	chr16	21641769	21642769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	52396.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	7.64635324262006	7.50069095897747	7.55257142444863	7.61002275422775	7.89431857858236	7.35416545730337	0.118100523734805	0.638424359272777	0.897558741004802
Merged-chr19-47919310-4	chr19	47918799	47919799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	0.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	8.06590443406974	8.14178287146551	8.25138449744613	7.77811237121728	7.69150371102907	7.73349724669188	-0.596559390957607	0.00506713146688115	0.061731460482613
Merged-chr8-123372892-2	chr8	123372392	123373392	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	-819.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	3.88631848221905	3.83337215496393	4.15989448829441	3.64848071123493	3.5879513002849	3.86597212972075	-0.846000791968308	0.118307739869906	0.459577517231332
Merged-chr2-59613104-4	chr2	59612597	59613597	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	1055.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	4.73270869346435	4.81468998782843	4.71662579270895	4.96040292601641	4.91902713727788	4.61552992532616	0.209227315804749	0.602085817538543	0.882226875541274
Merged-chr3-108210975-2	chr3	108210475	108211475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-448.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	5.39184361024664	5.62137147419796	5.55875185544123	5.47213641925958	5.17973654960929	5.3265714870343	-0.388512778590352	0.258239461660941	0.655709158556106
Merged-chr14-46831503-1	chr14	46831003	46832003	+	631.5	f0_balb.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-631.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	6.92657781559968	7.22452093078805	6.90595070172724	7.24849134900235	7.3978787275364	7.06288607384631	0.327141485516368	0.20556845605712	0.596131993192832
Merged-chr5-135490550-2	chr5	135490050	135491050	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	54572.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	2.25525096981602	2.25944153017691	2.47181913342039	2.39774626306766	2.22084424776247	2.35522213209424	-0.0250316520971197	0.976335642163231	1
Merged-chr7-89337482-4	chr7	89336977	89337977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MER5A1|DNA|hAT-Charlie	1310.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	7.19884919131183	7.39476530422643	6.87328708060616	7.65137615571698	7.70921387754106	7.14879699974754	0.519839630002869	0.0682180255853676	0.341659453091987
Merged-chr6-30326235-3	chr6	30325735	30326735	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21696.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	2.57856736488464	2.64791222656392	2.82154072544983	2.78096804957329	2.50375973050773	3.0641818679629	0.591307195708855	0.454573847988022	0.810474951829269
Merged-chr6-118141107-4	chr6	118140612	118141612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1972.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	3.82639056631843	3.83795686874286	3.9237095288268	3.66831291255105	3.55782474019401	3.63798191174078	-0.81013056661086	0.130115380946562	0.482323812471726
Merged-chr15-59820563-1	chr15	59820063	59821063	+	613.0	f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25604.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.01383595625776	3.57083531187618	3.72955798775762	3.9464523021578	4.01501578216505	4.05223180707731	0.6651859025475	0.217199348886383	0.610936495914344
Merged-chr1-37904979-4	chr1	37904461	37905461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033427)	TTS (NM_001033427)	11532.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	4.72742799565371	4.92734518136005	5.01729467908665	4.73324974138227	4.78604140709268	4.71698375727265	-0.320950062303621	0.417003552569808	0.787768914407335
Merged-chr7-34197496-2	chr7	34196996	34197996	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360710)	promoter-TSS (NM_001360710)	-826.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	3.81434510704868	4.12224802453683	4.0047204410659	4.06935420578687	4.2238244965036	4.49554035296455	0.809434266178897	0.109405831334451	0.441960722570073
Merged-chr11-6416677-4	chr11	6416175	6417175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	805.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	7.71301867492863	7.83287172228078	7.65214200866686	7.56134670899474	7.62173579031897	7.803957077689	-0.110110890390198	0.624466798285445	0.89205968496773
Merged-chr1-149947164-4	chr1	149946660	149947660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14130.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.0685650563806	6.67910762584694	6.39415864978408	6.18926702798604	6.44850746050432	6.43537339678058	-0.0740978623885341	0.812001180766572	0.955427892150755
Merged-chr14-51894465-3	chr14	51893956	51894956	+	995.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039676, exon 3 of 4)	exon (NM_001039676, exon 3 of 4)	846.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	4.99935325791782	5.08521229024469	4.53579900506069	4.31282420859739	4.06758285362587	4.42505600277783	-1.585933317639	0.000575279787135699	0.0117367296429425
Merged-chr14-103944896-3	chr14	103944384	103945384	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	82258.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	3.08708408139576	2.80671396020294	3.03987781053579	3.09793178268211	2.88923740287042	2.66423915374047	-0.39877346691731	0.599176967743021	0.880924908462167
Merged-chr1-34852219-2	chr1	34851719	34852719	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	2230.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	6.48329391940829	6.73451407566522	6.58002671645143	6.91000849093212	6.91169665936097	6.8013840315834	0.426478433389675	0.096519461950196	0.414171078848533
Merged-chr5-134584100-2	chr5	134583600	134584600	+	658.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020022, intron 1 of 10)	intron (NM_020022, intron 1 of 10)	1410.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	2.82327070107244	3.01468680081472	2.92629507102853	3.26009936508498	3.32432219242738	3.18451486405986	1.52072849263088	0.0255390098012912	0.1894562179423
Merged-chr14-104868318-4	chr14	104867813	104868813	+	873.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	229166.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	4.37655945293335	4.47966891218479	4.34256986236625	4.41927717421722	4.77828290734916	4.45612532138155	0.420171415064946	0.344154553714919	0.732933245300436
Merged-chr2-4507274-2	chr2	4506774	4507774	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	ID_B1|SINE|B4	-52480.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.73773915375027	5.97258044852638	5.94700880220068	5.97143957500018	6.23083121838785	6.22334105565534	0.449600198827704	0.134987229391568	0.491081557503217
Merged-chr14-75187034-4	chr14	75186520	75187520	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50595.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.20202098851155	5.99132744609173	6.54924675388632	6.38488407471644	6.28425080765401	6.34608473431926	0.13645042920563	0.650479318421261	0.902613484298836
Merged-chr11-116867628-2	chr11	116867190	116868190	+	837.142822	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	B2_Mm2|SINE|B2	13690.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	6.86109641962874	7.01391009828108	6.32617406820865	6.49796938892851	6.87987031463065	6.48746194247232	-0.209612018460201	0.504982206033983	0.837928144581384
Merged-chr11-95041440-4	chr11	95040928	95041928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-57.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	5.40727009250752	5.37387987718041	5.85543926890144	5.36754081521589	5.70263382703757	5.77652890942523	0.139213346645988	0.697846078747058	0.920111182740464
Merged-chr5-65864848-2	chr5	65864348	65865348	+	983.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	1279.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.91471953367262	6.99710637443693	6.34287820874863	6.65263565385554	6.95375889982393	6.7516171055606	0.000915788956212658	0.997564485981968	0.999517915335661
Merged-chr10-42502676-4	chr10	42502169	42503169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017472, intron 1 of 3)	CpG	615.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	8.48429373397037	8.82469679914754	8.40892059185753	8.5531885414198	8.65244348023436	8.63570463864241	0.0329500114460347	0.882262825553981	0.973104104412475
Merged-chr4-136173225-2	chr4	136172725	136173725	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 1 of 6)	intron (NM_177733, intron 1 of 6)	951.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	2.91170503706697	2.62829062916214	2.72349268262011	3.02197349322932	3.07171285654671	3.21988080421864	1.67995650448767	0.0240939987325648	0.18257111798008
Merged-chr8-105341090-2	chr8	105340590	105341590	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	6880.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	5.10762408766106	5.08396925211078	5.43593994108845	5.46093565083581	5.68539608307367	5.63515927164373	0.768839883472674	0.0271735582055494	0.196315121460299
Merged-chr11-54988991-4	chr11	54988496	54989496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	L1MB3|LINE|L1	-26056.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	5.81860168241825	5.71981203084183	6.06274240884021	6.09400065415763	6.54568371705377	6.16650105285467	0.736114522715413	0.019729604896371	0.160037138254751
Merged-chr3-9885138-4	chr3	9884528	9885528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51349.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.45712529202686	6.37321097297637	6.52462743048266	6.50981671430483	6.70720268097299	6.25749905680871	0.111182538703155	0.693578849740728	0.918960880648635
Merged-chr17-17393490-4	chr17	17392974	17393974	+	953.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025934, exon 10 of 10)	exon (NM_025934, exon 10 of 10)	-9212.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	7.40244510355703	7.93412960487389	7.46014274868417	7.63247495126115	8.00042195480646	7.45257269766438	0.138783569166853	0.623569287135487	0.891465179209166
Merged-chr6-134140826-2	chr6	134140320	134141320	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105120.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.71427788365849	3.02763623547565	3.17673447829622	2.866875344745	2.76892130283027	3.19386825498819	-0.149510802597494	0.841210273245475	0.962909549034125
Merged-chr6-30401713-5	chr6	30401162	30402162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311087)	promoter-TSS (NM_001311087)	-193.0	NM_029742	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	6.74694828023117	6.62035338888395	6.76136618252438	6.60926329681164	6.73127833105628	6.77451510935262	-0.00421240409066096	0.98677959803403	0.997085014732787
Merged-chr17-87314835-4	chr17	87314330	87315330	+	795.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	31944.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.93883150066366	4.44528067835296	3.96235545512288	4.18147095162141	4.06738335191022	4.19613723544024	-0.965998765714035	0.0731880469260335	0.355548284015728
Merged-chr1-36923209-3	chr1	36922702	36923702	+	838.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	B3|SINE|B2	16325.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.67926397248746	5.82584360217131	5.48149677538784	5.37907952545768	5.7035290209072	5.54487863879547	-0.228711047197148	0.497567731957663	0.833756672867911
Merged-chr7-19083950-4	chr7	19083462	19084462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126095, exon 1 of 15)	non-coding (NR_126095, exon 1 of 15)	113.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	7.71234928226724	7.82157160092837	7.79699672209601	8.15096742896399	8.21610919368277	8.20467111717112	0.587956660878831	0.00474466312556186	0.0591097363904404
Merged-chr13-3743259-4	chr13	3742732	3743732	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61086.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	3.42025971530298	3.5923473332965	3.63190511686125	3.35103664182093	3.16038646720161	3.32571197835327	-1.06293537190524	0.0804688415593507	0.375464104103093
Merged-chr8-61583927-2	chr8	61583427	61584427	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	7242.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.40321821374877	4.58307560911657	4.41207248972773	4.3303595155856	4.29779305606738	4.25310896121894	-0.459766370520671	0.2987366230964	0.695444616697123
Merged-chr1-9944113-4	chr1	9943565	9944565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	53.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	6.17718037253243	6.21750637008246	6.17507278771274	6.59483147614169	6.52173180614954	6.54255583630166	0.592379318826824	0.0259257241735486	0.190893230046346
Merged-chr7-29179510-4	chr7	29179013	29180013	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026545, intron 1 of 6)	intron (NM_026545, intron 1 of 6)	1160.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	5.70294964159241	5.46143807401619	5.00811749657368	6.32162336761403	6.34081912633415	5.73751522737973	1.3049442666029	0.000812231487993887	0.0153456515985155
Merged-chr4-154189121-3	chr4	154188626	154189626	+	961.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	18413.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	3.74844053476199	3.81249779458957	4.202542612303	3.84265334799283	3.74790130309106	4.30887430649768	0.156532342609513	0.779926234738518	0.945949149660645
Merged-chr13-14038788-2	chr13	14038288	14039288	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	Lx|LINE|L1	850.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	4.55329818257494	4.48313312883635	4.64524507915119	4.70613769060351	4.6858017896832	4.99751553474285	0.560622138076414	0.175520675970388	0.555463669244799
Merged-chr1-131979846-4	chr1	131979344	131980344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9235.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	5.10756985700308	5.2820643595317	5.77872579311563	5.13777272248684	5.05692132087514	5.41407035261757	-0.41012805370921	0.299597210326158	0.696314831841331
Merged-chr11-70015374-4	chr11	70014870	70015870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017366)	promoter-TSS (NM_017366)	58.0	NM_017366	11370.0	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	6.09401458104351	6.27585975809682	5.78943236129477	5.79144775872041	5.91512618171579	5.46618025316664	-0.573844093471547	0.0886301561729936	0.39519522184462
Merged-chr2-152346933-3	chr2	152346451	152347451	+	873.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033505, intron 1 of 4)	MER113|DNA|hAT-Charlie	1282.0	NR_033505	791417.0	Mm.451219	NR_033505	ENSMUSG00000068062	Gm14164	-	predicted gene 14164	ncRNA	4.07357382791857	4.38005942926965	4.42364831584489	4.16795932011456	4.19948575842599	4.74975987029393	0.238949182399669	0.632145205368906	0.895435008062156
Merged-chr8-125460901-1	chr8	125460401	125461401	+	605.0	f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31932.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.9183057781998	3.85005720623602	3.86923965689137	4.39576963879351	4.58075228613448	4.37864641637196	1.64447549436371	0.000617329808400463	0.0123864911254849
Merged-chr9-119103149-4	chr9	119102646	119103646	+	972.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177117, intron 1 of 36)	intron (NM_177117, intron 1 of 36)	668.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	5.03558797785931	4.97904176498169	5.32609480727353	5.23505103195934	5.34131959658395	4.95298166753538	0.178999194924384	0.637552477907423	0.89735407749672
Merged-chr13-40971458-4	chr13	40970961	40971961	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-29549.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	3.62886921999267	3.46160752837769	3.83349589975474	3.57597113521058	3.48024198076315	3.37780455934078	-0.570091922713372	0.33124760108682	0.722608352547837
Merged-chr6-108720178-2	chr6	108719678	108720678	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59244.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.12116017424935	3.09424565999532	3.10886866374306	3.25378539597303	2.92963606542924	3.00010121997156	-0.178189188725109	0.790195104264329	0.949368241827272
Merged-chr10-16997003-4	chr10	16996500	16997500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	98782.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.52297389113012	4.36943585526158	4.66896077014519	4.93683123107541	4.94055709437527	5.2715794416931	1.22358088276813	0.00302492649755581	0.0424019683302938
Merged-chr13-42372424-4	chr13	42371922	42372922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	70946.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	3.37121824025126	3.17652635084601	3.3181640556694	3.5231452560088	3.35352301984522	3.33262718141688	0.461837530909718	0.44824219456042	0.807155185977451
Merged-chr5-95922990-3	chr5	95922477	95923477	+	980.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-33962.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	3.09036985727963	2.87544375404214	3.01702723122178	2.91663053122113	2.74011546434622	2.78470491037121	-0.91383416364709	0.20073096853831	0.590003971533284
Merged-chr14-21621111-1	chr14	21620611	21621611	+	564.5	f0_balb.idr	intron (NM_017479, intron 5 of 16)	intron (NM_017479, intron 5 of 16)	93465.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	2.28837255849839	2.21769617059251	2.357674483365	2.03507209154285	2.11619661714365	2.17299164590403	-1.32765846358373	0.14368125504821	1
Merged-chr16-31169813-2	chr16	31169313	31170313	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	RLTR11B|LTR|ERVK	31425.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	2.97444646893997	3.07304219158358	3.35382028238101	3.07916452263575	2.81508318098967	3.03834796210842	-0.719113775597475	0.302139857542504	0.69891305259052
Merged-chr6-99785414-4	chr6	99784900	99785900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59008.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	4.41381472380521	3.70275517276406	4.06634223495298	3.45208627677054	3.66419766391536	3.56448197141034	-1.70224994235686	0.00483853834836357	0.0598232161860705
Merged-chr11-8590172-2	chr11	8589672	8590672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74363.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.35510905167963	6.06589867905027	6.49631636286632	6.47336420423456	6.18055442947018	6.35832681541315	0.0485446215285398	0.869821228376738	0.969901645415424
Merged-chr15-79027909-2	chr15	79027409	79028409	+	894.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008197)	promoter-TSS (NM_008197)	-303.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	5.72298250556876	5.61282811543045	5.85660486749019	5.71277661336146	5.60014228225353	5.55279758875362	-0.187206730363034	0.555322589953092	0.863191483122339
Merged-chr15-79347467-4	chr15	79346929	79347929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-91.0	NM_010755	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	7.55583885968701	7.38399968950463	6.40572132210356	7.16509501115788	6.93207605621438	6.44542198619775	-0.490831411738425	0.417398645204576	0.787970785225811
Merged-chr2-153092361-3	chr2	153091861	153092861	+	797.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16107.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	4.89483571097631	4.37245428119957	4.91368450561031	5.14904408935851	4.98287199605435	4.90620947683865	0.606682966208328	0.153749926542854	0.52283394857893
Merged-chr12-32698911-4	chr12	32698332	32699332	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121503.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.57635230696858	3.55557303410288	3.37192929813936	3.44715061737478	3.47403349997934	3.50036616548583	-0.136722182305804	0.813223895024451	0.955933854959943
Merged-chr6-114922675-5	chr6	114922303	114923303	+	912.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-982.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.08105046464226	3.15729957101609	3.55575007413133	3.45771863066567	2.98029993860191	3.25471851564981	-0.125709444199823	0.854989514058847	0.966038421653227
Merged-chr17-63849748-4	chr17	63849233	63850233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14248.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	4.50447207049411	4.29236672975544	4.79248796417114	4.49603734432653	4.45895477311971	4.78654842597584	0.111125114770562	0.805720949431532	0.953956034266138
Merged-chr7-25765265-4	chr7	25764766	25765766	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10507.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	4.63828834430092	4.71773641132035	5.25833204462714	4.81470236416735	4.84987260945781	5.23441809747774	0.182030665502365	0.676138222316631	0.912421384593547
Merged-chr4-155206647-3	chr4	155206133	155207133	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	URR1B|DNA|hAT-Charlie	15902.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.24722544433073	4.50238876187302	4.44776388554059	5.3636672392841	5.23078442683579	5.00922715425208	1.85356867668509	7.42108249365189e-06	0.000310610378335909
Merged-chr8-71308765-4	chr8	71308204	71309204	+	785.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	35990.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.25444894157831	6.25665223298945	6.54924980477477	6.19978408116238	6.11521844066777	6.38449075235786	-0.203210022923969	0.480538256585148	0.824561314318589
Merged-chr11-101087970-2	chr11	101087470	101088470	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159384, intron 2 of 6)	intron (NM_001159384, intron 2 of 6)	680.0	NM_001159384	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	5.10654140330691	5.46253633058205	5.39409591193248	5.66450455344487	5.32927113396969	5.65203970779509	0.426636536386058	0.23230685087505	0.628651894354467
Merged-chr15-95801421-4	chr15	95800917	95801917	+	923.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	10574.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.51716731642991	6.13090322720865	6.19912507269218	6.12851670759023	6.33069932775777	5.80067187343507	-0.297591895938186	0.353747342538915	0.740929143625235
Merged-chr13-23526581-4	chr13	23526090	23527090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	4.57750396250703	4.53300605835871	4.27817358362811	4.24368422914684	4.32069714090572	4.75474971960473	-0.0693013461681947	0.882346542540746	0.973137626421094
Merged-chr18-11657782-4	chr18	11657294	11658294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	CpG	445.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	7.84466637343255	8.39858051104294	8.05630611217567	8.28744619476588	8.35749282339694	8.47094712423278	0.347789608043053	0.154019293807491	0.523165395577891
Merged-chr10-117865877-3	chr10	117865367	117866367	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-19893.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.28101092264713	6.36668457087793	5.74893326329896	6.64100152919063	6.68296550446327	6.32730312876714	0.638259029021188	0.0465534751455996	0.273008865361788
Merged-chr3-90246311-2	chr3	90245811	90246811	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1881.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	3.78149836017104	4.03422643472297	4.14755444229182	4.23945200477992	4.40880335318825	4.51146851427663	1.1117249626351	0.0227027414356368	0.175660192428535
Merged-chr16-18732718-2	chr16	18732218	18733218	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44129.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	5.3497420206935	5.41242489388287	5.0734400047505	5.02104111957365	4.89000948615047	4.404530593616	-1.02065157631673	0.0173219173252101	0.14674425746244
Merged-chr7-127333619-1	chr7	127333119	127334119	+	547.0	f1_c57bl6.idr	3' UTR (NM_008400, exon 31 of 31)	3' UTR (NM_008400, exon 31 of 31)	11695.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	1.99831722395774	1.89514550181345	2.15169668651343	1.76620904465649	1.72758096305189	1.82669468118911	-2.37226687795029	0.0307343482008264	1
Merged-chr2-69647179-4	chr2	69646682	69647682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028284)	promoter-TSS (NM_028284)	-73.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	5.31725829980318	5.23816303251727	5.05827004391525	4.62904570547241	4.98292579407638	5.12286932297641	-0.614153612892788	0.117399230075998	0.45752213648839
Merged-chr17-34351374-1	chr17	34350874	34351874	+	852.0	f1_c57bl6.idr	Intergenic	Intergenic	-3448.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	2.59330497853088	2.52091394559198	2.5997677288279	2.99893480594886	2.5131459685902	2.9830980806288	1.48247877856259	0.0655399134853198	0.333907667452554
Merged-chr6-116209499-1	chr6	116208999	116209999	+	540.0	f1_balb.idr	intron (NM_026585, intron 3 of 30)	intron (NM_026585, intron 3 of 30)	1466.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	3.86737202432663	3.54251923965659	3.65373905761942	3.80543074664585	3.46726460981779	3.50178042448736	-0.32868661987059	0.571524111390398	0.869547320544841
Merged-chr4-43523645-4	chr4	43523177	43524177	+	860.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-123.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	3.04016585960218	2.84667146148208	2.93297363791065	2.85854364502139	2.96869668002497	3.00521156083976	0.010009225439348	0.988391803553882	0.997390908272651
Merged-chr6-56384427-3	chr6	56383922	56384922	+	774.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14788.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	3.10776679612801	3.23339677843809	2.6754159826805	2.86726500836019	2.71503282312496	3.13172307571459	-0.515084408996281	0.521161535088297	0.84693755135567
Merged-chr13-28953037-5	chr13	28952517	28953517	+	976.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009238, exon 1 of 1)	exon (NM_009238, exon 1 of 1)	682.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	4.86643416708442	4.75487621997493	4.31953786788731	3.73456390158073	3.59460536277726	3.7574815050659	-3.02686288621617	4.67227769738556e-08	3.6572989900664e-06
Merged-chr2-165300562-3	chr2	165300049	165301049	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12711.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	4.39722129693272	4.30982093033098	4.34065765446085	4.30357736769896	4.35173503660237	4.3190516624873	-0.0625736303583072	0.887369290054206	0.973836995667151
Merged-chr10-99632781-4	chr10	99632281	99633281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	9139.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	5.18972459444752	5.65726254733386	5.26965982470794	5.59881085064903	5.56945960661649	5.73745044950731	0.443064447259396	0.210480606400467	0.602621125710907
Merged-chr2-90478780-4	chr2	90478275	90479275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	399.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.1975761663019	6.97996858714627	7.083292021382	6.56323400720303	6.59168724439267	6.52691955364217	-0.818178877915042	0.00112378056012821	0.0197106941077462
Merged-chr1-144215484-4	chr1	144214982	144215982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33622.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.76586406206339	4.95747020367212	4.86466964375283	4.98278130009546	5.4690223115284	5.21170068782543	0.800814033977547	0.0397012358068696	0.247765726319508
Merged-chr11-117320618-4	chr11	117320094	117321094	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11121.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.36766885838447	6.29218974330768	6.41621367310972	6.21050041451967	6.14227348741639	6.09454887762455	-0.341913529112474	0.213769727138657	0.606900020244801
Merged-chr2-152779422-2	chr2	152778922	152779922	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289739, intron 2 of 4)	L2|LINE|L2	25249.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	3.57205123987478	3.04423931762918	3.55832386056345	3.95728214107128	3.42342448940214	3.52001794659407	0.8477141140413	0.210181685312753	0.602189851646016
Merged-chr11-69408261-2	chr11	69407761	69408761	+	805.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001017426, exon 3 of 23)	5' UTR (NM_001017426, exon 3 of 23)	5414.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.85633996080677	5.59572582326215	5.63346865946644	6.06638031397129	5.80644227560409	5.77773404152332	0.336778694652592	0.291162076919861	0.688952483900122
Merged-chr13-37778887-4	chr13	37778409	37779409	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47129.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.64798695106737	7.9010349644547	7.84677604823807	7.73441186627465	7.96742475383356	7.29086500953939	-0.13938346598114	0.602631440534451	0.882397657327329
Merged-chr5-123145435-3	chr5	123144945	123145945	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3252.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	3.99564591691751	4.02867512098738	4.08948441319194	4.01286822311296	3.93325623642785	4.15703516275137	-0.0174280324192234	0.971485090688917	0.99377981119604
Merged-chr2-26910725-4	chr2	26910233	26911233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013721)	promoter-TSS (NM_013721)	-74.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	7.76508854929626	7.71448889615748	7.63197039963127	7.34810812524973	7.41084669786985	7.61492856042859	-0.364102260760721	0.109114766346289	0.441403154170938
Merged-chr5-66363505-4	chr5	66363031	66364031	+	927.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25866.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	3.94695778344501	4.09034393381423	4.00957769015148	3.93750225326386	3.84404604680696	3.71631417483843	-0.546983374180901	0.284975945198064	0.682544499238377
Merged-chr13-49198390-2	chr13	49197890	49198890	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	10843.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.01634686736589	8.03069422534459	7.75051279298668	8.02969248045715	8.17282628293858	7.84161858534929	0.118616355543847	0.607827151684393	0.884752831355176
Merged-chr7-27471736-2	chr7	27471236	27472236	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	2.63293489234298	2.55754089438517	3.08425102410377	2.62737608847532	2.48013971010132	2.57272919772632	-1.16621979662093	0.150832644489084	0.517930120611079
Merged-chr14-60989439-2	chr14	60988939	60989939	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	48548.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.30609740853325	3.28822801789974	3.43054463632132	3.73142809786894	3.5515060276849	4.12586362981185	1.70334459039033	0.00519916510874725	0.062815758729293
Merged-chr17-71252050-1	chr17	71251550	71252550	+	703.5	f1_balb.idr	TTS (NM_001357336)	TTS (NM_001357336)	47396.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.62520331059331	5.26971115354589	5.59423583214366	4.27042381672712	4.37996097650265	4.37613337855642	-2.64194066936749	7.91064995503692e-10	8.84716883681065e-08
Merged-chr13-64128267-2	chr13	64127767	64128767	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 1 of 11)	intron (NM_001001321, intron 1 of 11)	1063.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	2.98401860563537	3.07069886390096	3.0201025289399	3.31197931790101	3.56143242371574	3.2776046854286	1.58226411209573	0.0160790547692806	0.139336178842148
Merged-chr9-45300601-4	chr9	45300077	45301077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18523.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	7.17918291484471	7.22424644065969	6.92710417734076	6.98769371988127	7.06984174322925	6.78728822530652	-0.2462400535537	0.333618208919894	0.724494720400407
Merged-chr5-122318332-4	chr5	122317838	122318838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 4 of 5)	intron (NM_177242, intron 4 of 5)	33940.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	3.26035847831664	3.17709516458092	3.40293978141573	3.39455241659451	3.16707742400686	3.47329790786318	0.264952997889431	0.67056213039261	0.910030698120682
Merged-chr13-45052449-4	chr13	45051952	45052952	+	890.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50356.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.27482080968986	3.3738413775179	3.764371993106	3.17103796266603	3.06894872085148	3.09706088886205	-1.51164959669764	0.0229880689114973	0.177192333301331
Merged-chr15-79357177-4	chr15	79356687	79357687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 2 of 2)	intron (NM_001304832, intron 2 of 2)	8785.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	6.77892341919558	5.65302994416363	5.77704682317969	7.03003206171986	7.0600314148336	6.60719751624666	1.158175412448	0.0778800974358842	0.368488976881898
Merged-chr11-85811981-2	chr11	85811481	85812481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20407.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	5.28555075074345	5.5462015480643	6.01132581067213	5.10258110744243	5.21105699852283	5.70051346585864	-0.542748709029962	0.179759978693739	0.561276907469273
Merged-chr9-70869677-2	chr9	70869177	70870177	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	65131.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	2.30230893114328	2.49192368323355	2.52237887384198	2.44668324644478	2.13657033326278	2.4056231946918	-0.686579471721318	0.433792864340454	1
Merged-chr13-115090679-3	chr13	115090175	115091175	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-517.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	6.585836628859	6.53398639154345	6.25895812463765	6.87358874896346	6.81348405918332	6.34114327559136	0.368797530968084	0.211817887955808	0.604236512672024
Merged-chr12-36381002-4	chr12	36380505	36381505	+	923.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289502)	promoter-TSS (NM_001289502)	-445.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	6.86914054191694	6.52921336981362	6.17668190910899	7.57411286047777	7.71999148748993	6.44684645394686	1.22100502613066	0.056921909656013	0.307580335243874
Merged-chr3-105002679-2	chr3	105002179	105003179	+	592.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163332, exon 6 of 6)	3' UTR (NM_001163332, exon 6 of 6)	-40970.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	3.21103483328018	3.26048555325696	3.37099542838684	3.01162225602137	2.9816355446331	3.38860755091838	-0.626496707125262	0.345387678746068	0.73374724517199
Merged-chr11-20248498-4	chr11	20248028	20249028	+	816.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	896.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	4.59354089870895	4.68429299638329	4.67984907952915	4.52833663364356	4.45773214467814	4.70701188285407	-0.225163325004929	0.58782969329772	0.876090509043824
Merged-chr11-77520783-4	chr11	77520306	77521306	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026185)	TTS (NM_026185)	5689.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	5.102859122766	4.9532635101063	5.07712372554116	4.98542960354579	5.1890130030226	5.23836647128979	0.204170399989013	0.577385997500343	0.872117086580778
Merged-chr11-59219194-4	chr11	59218695	59219695	+	711.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	B3A|SINE|B2	8967.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	4.65386114509044	4.57495366777238	4.84440440411783	4.45321634083556	4.24807281426977	4.73103050462706	-0.514769164575422	0.246496774387704	0.64358792567235
Merged-chr5-90876279-4	chr5	90875796	90876796	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14949.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	5.90074064466722	5.7897241183005	5.72198547259979	5.21191618979009	4.9493943921178	5.39547471550166	-1.21178690276083	0.000462777705404037	0.00989892218798434
Merged-chr2-60874144-4	chr2	60873677	60874677	+	823.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MTD|LTR|ERVL-MaLR	7261.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.88633910345787	4.14654451209586	4.18282799422516	3.83343505403585	3.9178841863783	3.92406121378368	-0.548428041717683	0.278610442024384	0.675858361562782
Merged-chr7-118243764-4	chr7	118243297	118244297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	-110.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	7.68243353852535	7.50557059249762	7.44410829496229	7.58837971277192	7.33666139185379	7.4803453980016	-0.120343178693121	0.607739359067553	0.884709874063631
Merged-chr9-7177012-4	chr9	7176509	7177509	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029851)	promoter-TSS (NM_029851)	37.0	NM_029851	110350.0	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	2.65314753951473	2.72974739918518	2.83202827093847	2.77921381280911	2.64727251830415	2.45344577706751	-0.550463643349182	0.486631992187331	1
Merged-chr18-82868314-2	chr18	82867814	82868814	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12417.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.93816742730487	6.29506014793177	6.23664308734671	6.08849631879095	6.57253246440599	6.21471294115765	0.258246714614572	0.41028240129022	0.783161158187622
Merged-chr10-117393025-2	chr10	117392525	117393525	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16052.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	5.47140803710414	5.18793497268072	4.84380025408977	5.8257688265829	5.72518125014429	5.19486567452691	0.795377531081983	0.0514310489931479	0.289206589557218
Merged-chr2-170169347-3	chr2	170168852	170169852	+	803.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26677.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.76045475396986	4.77890314032821	4.94767876368812	4.78199192000086	4.72891432092612	4.87068022692118	-0.07975450246412	0.83842894960514	0.962518552953479
Merged-chr11-116139633-2	chr11	116139133	116140133	+	905.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-765.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	5.75387015470049	5.85876729889713	5.45053593229199	5.51897566676411	5.74208981035751	5.28246275243956	-0.307437532471396	0.383061320096098	0.764535004943228
Merged-chr1-135700814-4	chr1	135700359	135701359	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19204.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	2.98780081096073	2.68235508699309	2.90357371101137	2.87410487259901	2.7899020711688	3.20260274976031	0.466851192862723	0.525755159944362	0.849127238910141
Merged-chr10-8791945-2	chr10	8791445	8792445	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	94125.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.87613163796335	2.47530080214796	3.04998316954936	2.73898183223783	2.58298541886931	3.06689359867546	-0.0518451415898365	0.949988634732767	0.988379692893419
Merged-chr2-59207348-3	chr2	59206887	59207887	+	912.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46537.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.80244524258169	6.37374869415058	6.27814262324674	6.72373704659152	6.621230325859	6.27468697408669	0.0755551237837647	0.806336036657318	0.954125791654011
Merged-chr16-92867462-4	chr16	92866965	92867965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-41391.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.22022986824186	8.17921572325963	7.77972280586808	7.98254793534845	8.3781172990306	7.68728712200843	-0.0318530674587359	0.908279366081721	0.979256896393069
Merged-chr17-73361229-4	chr17	73360719	73361719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 4 of 22)	intron (NM_001033444, intron 4 of 22)	38077.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	4.51083007346036	4.84406361253799	4.44940550736932	4.77675603815681	4.85437077750739	4.84769992406722	0.468047099511635	0.265389976310621	0.66310566258133
Merged-chr2-29679179-2	chr2	29678679	29679679	+	744.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039087, exon 2 of 26)	exon (NM_001039087, exon 2 of 26)	59459.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.85490633630242	4.57473495237498	4.83256238474554	4.78058372162733	4.39289214038219	4.62912394774759	-0.35885099227039	0.402300245434341	0.777918217612899
Merged-chr11-82845510-4	chr11	82845013	82846013	+	936.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164570, intron 1 of 7)	intron (NM_001164570, intron 1 of 7)	-16470.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	6.45075617007777	6.43429361825144	6.15614106129387	6.50846225520411	5.96715054223418	6.15069318219139	-0.221672987466988	0.475845824443025	0.82218949187564
Merged-chr10-35347575-3	chr10	35347072	35348072	+	926.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	864172.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	3.00851363977574	3.23777388254172	3.21222110646878	3.26375681714557	3.02132280031288	3.10923433389507	-0.0955870351636269	0.884251442707301	0.973466734537782
Merged-chr19-24979249-4	chr19	24978774	24979774	+	920.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17658.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	4.60967922521335	4.51793776542085	4.64117140216628	4.62202101374703	4.74719698941648	4.89280283263375	0.393530081666629	0.335146735731215	0.725351478491702
Merged-chr19-55708116-4	chr19	55707594	55708594	+	924.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5890.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.44324895106431	4.17450755818867	4.27976055685305	4.65075617644417	4.43667688330504	4.30189598337675	0.437203111020985	0.338234913457604	0.728169120005134
Merged-chr7-125599775-4	chr7	125599291	125600291	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3638.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.97654707978338	4.75683090235851	4.70672380279975	4.53091294912375	4.74375051636183	4.56506303723077	-0.463414363444647	0.262711528413975	0.660713340071636
Merged-chr3-61397002-4	chr3	61396503	61397503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32496.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.43620395279307	6.56421228479554	6.33676345189295	6.06619166033953	6.04409542391387	6.21666225480934	-0.583554706254203	0.0361747136599757	0.233951933329649
Merged-chr9-22118271-4	chr9	22117785	22118785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	5.88409079207593	6.06641696260137	6.00650610215965	6.16581410226663	6.24637193461268	6.49695996742165	0.5343804121622	0.0682058724346431	0.341659453091987
Merged-chr1-182563424-2	chr1	182562924	182563924	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1583.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	3.09218040163415	3.24139442554939	3.1091438609162	3.0156832745906	2.92754837086451	3.12286780020225	-0.598145320275973	0.365891393289473	0.751005707138497
Merged-chr9-35282588-4	chr9	35282105	35283105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040715, intron 2 of 4)	intron (NR_040715, intron 2 of 4)	1500.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	4.06788079467585	3.8862640364636	3.83117598133508	3.93925895617253	3.92430004653203	3.62344311508314	-0.282228870674688	0.597975704747365	0.880511769533228
Merged-chr10-91082880-4	chr10	91082391	91083391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	-148.0	NM_009684	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	7.34947060193276	7.85607754942826	7.36636734117013	7.37560077778438	7.47785262706495	7.1726520713259	-0.292170843142868	0.276711309657707	0.674041208769616
Merged-chr7-80353992-3	chr7	80353490	80354490	+	751.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 21 of 23)	intron (NM_172903, intron 21 of 23)	10853.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	3.49094894129053	3.68099113453952	3.94386526089327	3.10818462344078	3.24835655970592	3.37081408084359	-1.80268555482572	0.00493631832443342	0.060724597152492
Merged-chr6-54886416-3	chr6	54885912	54886912	+	798.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 4 of 4)	intron (NM_199143, intron 4 of 4)	69496.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	3.28079892014648	3.50884050675679	3.48629211154638	3.35834073765264	3.56143504103075	3.3336367435606	0.00378804588564004	0.99500263698125	0.998961028701257
Merged-chr19-56254725-3	chr19	56254277	56255277	+	737.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33135.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	4.00703837569834	4.12986220510107	4.23038077258766	4.37504787618562	4.51899210290633	4.59094941452965	1.00587023717447	0.027309631677359	0.196913330382122
Merged-chr4-32353039-4	chr4	32352533	32353533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64402.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.04506548411007	6.06843948802486	5.61609810900415	4.68934390585418	4.27817924033765	4.6075696497452	-3.01693530533063	1.38665937550412e-13	3.11000413253226e-11
Merged-chr3-41587789-4	chr3	41587279	41588279	+	962.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22899.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.75630493381983	5.12410104728238	5.21632741721332	4.83088594142018	4.66421279389997	5.09294588279274	-0.389780848628426	0.344756192413369	0.733331797595266
Merged-chr10-61122504-4	chr10	61121994	61122994	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 3 of 14)	intron (NM_009163, intron 3 of 14)	25190.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	6.57829946973465	6.61259339934735	6.62624975008475	6.96907823548718	7.20320983054899	6.87449503908198	0.663509771682075	0.00962555699579067	0.0979004212817198
Merged-chr5-29993793-4	chr5	29993292	29994292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19322.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.88913838017682	4.47885587314814	4.83384352224949	4.75576117807289	5.19039152414713	5.00690767025125	0.576002303556483	0.17038043462172	0.547769223545867
Merged-chr15-96461024-4	chr15	96460543	96461543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028148)	promoter-TSS (NM_028148)	-200.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	7.84812995744586	7.89321450521337	7.66103076933812	7.69430190562408	7.41859075232381	7.50377229576931	-0.385344492974472	0.0954294340373873	0.41176583423475
Merged-chr1-131020312-1	chr1	131019812	131020812	+	851.0	f0_c57.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	467.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.45706802365173	6.12313721723791	5.98651724869707	7.08170409595387	7.19996624185218	6.49454558337931	1.20130585746712	0.000201212898228977	0.00504141006800262
Merged-chr5-32747841-4	chr5	32747330	32748330	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	LFSINE_Vert|SINE|tRNA	-1488.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	6.12529454105199	6.161001542081	6.35085779255777	5.99529078531935	6.12599465473403	6.08981191055363	-0.230062378328585	0.421418522438713	0.790277262515616
Merged-chr18-46365142-4	chr18	46364650	46365650	+	853.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53222.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	4.15279054314774	3.80558082891191	4.39899361859863	4.20136122484214	4.49031932486343	4.0081404031865	0.335726889268226	0.527323680990868	0.849922098680457
Merged-chr6-97800118-1	chr6	97799618	97800618	+	574.0	f0_balb.idr	Intergenic	Lx9|LINE|L1	-6940.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	2.89638693124215	3.06852357123263	2.87793028771579	2.90993725949793	2.87920365836073	3.07045684374379	-0.014077715670765	0.983749126501932	0.996435029808107
Merged-chr7-92700310-4	chr7	92699735	92700735	+	941.9404910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30323.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	3.75058031488742	3.76140928256175	3.61912452750281	4.10576717023392	4.0828517672928	4.05813265019541	1.13619858749297	0.0275206767906455	0.197845557453629
Merged-chr8-125600855-1	chr8	125600355	125601355	+	844.0	f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	16217.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	6.18904924768041	6.19727573879246	6.25175357110088	5.98539975158227	5.90040353568399	5.96759023507568	-0.449374445741011	0.11277997751186	0.448540764710779
Merged-chr16-33937034-4	chr16	33936534	33937534	+	909.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	30004.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.98330658279474	5.10424294023405	5.12834606715018	4.98904138454595	4.89644993094377	4.95127604103065	-0.273661477535841	0.458426541906856	0.812981239724864
Merged-chr7-27231834-4	chr7	27231334	27232334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1179.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	3.80700170908303	3.98711859102137	3.87482095801928	4.04432227626901	3.92799290190818	3.99426101099004	0.285820698837308	0.569256869452979	0.8688875602138
Merged-chr13-23709959-4	chr13	23709465	23710465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010424, intron 1 of 5)	MLTR14|LTR|ERV1	889.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	8.53078247496779	8.60751806654081	7.90000681232731	8.50075619849244	9.06080833309282	8.37608331223679	0.412618820261661	0.166372534174214	0.541630182071597
Merged-chr6-87811953-7	chr6	87811441	87812441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039394)	promoter-TSS (NM_001039394)	157.0	NR_104477	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	8.11696780901103	7.99734263173829	7.9556547471783	8.01142965779646	8.09184448044144	8.00417042003025	0.0153835641336001	0.941628328313012	0.987024728112131
Merged-chr11-120037445-2	chr11	120036931	120037931	+	854.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	4350.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	2.87233111841188	2.92544680446385	2.92583928014246	3.23625188854621	2.92212184616294	3.177242845564	0.9566169299596	0.163627770888484	0.537659027764836
Merged-chr6-120193332-4	chr6	120192835	120193835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347432)	promoter-TSS (NM_001347432)	-488.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.82223822311142	5.10766506103912	4.57388701847002	4.70370894022035	4.88171285458521	4.50561716183461	-0.333102333493816	0.445895687508107	0.805432049659428
Merged-chr4-131850402-2	chr4	131849902	131850902	+	826.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 1 of 9)	MIR|SINE|MIR	6931.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	2.64168252086063	2.63867583149673	3.01828263290443	2.71181010705369	2.5914410873992	2.97907711771934	-0.0361030597517526	0.962794171917884	0.990972235433849
Merged-chr19-11234439-4	chr19	11233950	11234950	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	31701.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	4.55997959181095	4.36307815192332	4.59692270349213	4.15835420992445	4.22187957408919	4.2914539303748	-0.75333958413708	0.0940536018168051	0.408558583773876
Merged-chr13-49172737-2	chr13	49172237	49173237	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14810.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	3.3268777256534	3.01485631623436	3.32202669211148	3.31701235320751	3.12065213978309	3.16482078812346	-0.0986269255954693	0.879591950866514	0.97219374767077
Merged-chr2-145811704-2	chr2	145811204	145812204	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B1F|SINE|Alu	25588.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.01076894509492	3.8038798508866	4.23132918936998	4.02099249986709	3.79382975175154	4.77244000138605	0.651168198681909	0.266477336212777	0.664166899200562
Merged-chr4-107067455-3	chr4	107066890	107067890	+	849.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025500)	promoter-TSS (NM_025500)	402.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	5.15536370266452	5.39756920732738	5.15408226046983	5.39198226778769	5.26500331867122	5.00100760560276	-0.0177054537134916	0.961593440745763	0.990648883228567
Merged-chr8-80992137-3	chr8	80991637	80992637	+	774.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 6 of 9)	intron (NM_027554, intron 6 of 9)	22769.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.88097300781027	2.83311889967116	2.97218080223582	2.82933374564483	2.77713051187941	2.80446153738648	-0.458574724062496	0.514070131490285	0.842928757124913
Merged-chr2-102952679-2	chr2	102952179	102953179	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-51014.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.55830116950134	2.8876683741774	3.09376191735117	2.97576044400488	2.8545649731128	3.16520035848826	0.655032423004829	0.398069387711676	0.77481479362589
Merged-chr12-100531072-4	chr12	100530555	100531555	+	975.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10233.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.17668563559083	3.25378761753157	3.08065608050071	3.18844352353463	3.15891033121957	3.3259551465093	0.191196218396498	0.763306799061831	0.941759940338027
Merged-chr2-72476176-4	chr2	72475653	72476653	+	974.044067	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025866)	promoter-TSS (NM_025866)	-66.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	4.28610482039184	4.3519004182456	4.19476687747695	4.77785363853153	4.66472768497018	4.58344107314298	0.990396112846962	0.0224517648261209	0.174285516153734
Merged-chr11-115710172-2	chr11	115709687	115710687	+	689.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1590.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	2.61065072669618	2.7835285344381	2.86034088226431	2.67532663620928	2.67319011632382	2.6912411945641	-0.393413436052078	0.596233687838524	1
Merged-chr4-133754118-1	chr4	133753618	133754618	+	1000.0	f0_balb.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-507.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.34465244975129	6.60735995323396	6.93138470519858	7.07800607774982	6.67642648430579	7.15714717815998	-0.0292285718085139	0.925858239006476	0.983305773102619
Merged-chr8-45333748-4	chr8	45333242	45334242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-546.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	8.12045916366142	8.48821957579044	8.15069529388344	8.19255776135759	8.4327530801788	8.10900911531174	-0.0151046680968412	0.949036188277622	0.988169196639905
Merged-chr17-47454818-3	chr17	47454299	47455299	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145489, intron 2 of 4)	intron (NM_145489, intron 2 of 4)	-17424.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	2.88570100001889	2.9003898376197	2.86649032027141	2.98639232410563	2.81552285728146	3.1722590082759	0.510458083666664	0.465710940554597	0.817146354802119
Merged-chr3-16007997-4	chr3	16007497	16008497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1665.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	5.73105541152651	5.98407030940616	6.13748498494064	5.80560123474227	5.92199111684208	6.41804034317356	0.191634263318167	0.571890572844024	0.869751988324417
Merged-chr1-152798982-2	chr1	152798482	152799482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-1171.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.15270272408789	7.35079763851316	7.24535665302484	7.37280905026751	7.57615424629503	7.35976316798679	0.284832122948258	0.228084588182543	0.623077135802944
Merged-chr4-19575076-4	chr4	19574570	19575570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	4.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	8.08206356259255	8.26142145096323	7.92600176971327	7.83729517190388	7.86843706041016	7.63345494927901	-0.44568709107906	0.0516396386318644	0.289875939504835
Merged-chr16-20141085-4	chr16	20140571	20141571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145931)	promoter-TSS (NM_001145931)	8.0	NM_001145930	208146.0	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	6.44386859569981	6.29451613792596	6.08782582279726	6.47635369883049	6.05309918160283	5.98188138326682	-0.162622047404071	0.603010501509027	0.882484631305431
Merged-chr2-62664240-4	chr2	62663751	62664751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145523)	promoter-TSS (NM_145523)	-76.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	5.05155098630433	4.76840845617506	4.20487489006633	4.83652875769313	4.67186410797354	4.38292190653635	-0.190430595651383	0.703843143819844	0.92227492970129
Merged-chr16-90459215-4	chr16	90458719	90459719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72822.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	4.03161198060286	3.59751078750509	3.66033796012415	3.43717808955111	3.54006005070389	3.62365740636475	-0.853612810871468	0.141486184536233	0.502183459290427
Merged-chr15-97774363-3	chr15	97773840	97774840	+	910.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6674.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	3.67097144873586	3.36246453614211	3.65745232907131	3.28366163704268	3.01633246091519	3.29962797931438	-1.48431343224284	0.0216457710103027	0.17021375617691
Merged-chr15-50703991-4	chr15	50703503	50704503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	185046.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.34205193831862	4.10870805672613	3.83913025405375	4.11086864336131	3.81293639271275	4.01581929231828	-0.406715929514612	0.437969802558672	0.8003671068918
Merged-chr17-35127783-2	chr17	35127283	35128283	+	916.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033477, exon 3 of 3)	exon (NM_033477, exon 3 of 3)	1381.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	5.33475765868545	5.40654667600499	5.6282377588934	5.12348484519147	5.11306655341189	5.5611997429104	-0.366606860039193	0.316607975838617	0.710660560944371
Merged-chr9-123851066-5	chr9	123850627	123851627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	534.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	7.82416425875958	7.91511810811545	7.89186095240108	7.77735234285994	8.30784372636575	7.82563327969454	0.178541728128092	0.475551807628343	0.822039243417391
Merged-chr4-117131028-2	chr4	117130528	117131528	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313916, intron 9 of 14)	intron (NM_001313916, intron 9 of 14)	2935.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	3.09312737598369	2.83552084448232	2.9271599312197	3.12247249964849	3.02014297011907	3.06157784696349	0.504448203090057	0.458926188826607	0.813236440920954
Merged-chr11-77447410-2	chr11	77446910	77447910	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-16503.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	3.68194831999386	3.65759870993391	3.39793957339722	3.80914836817939	3.41823284150496	3.64217030553563	0.134204160543044	0.820325127076772	0.957598389082548
Merged-chr5-115490772-2	chr5	115490279	115491279	+	999.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-6295.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	6.07859120123253	6.40046982837223	6.07413203081487	5.776432768574	6.18407955032539	6.04475767200338	-0.309016688642878	0.324428628066323	0.717544999689449
Merged-chr14-52280039-4	chr14	52279541	52280541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-646.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	7.90952944520071	8.01253856948646	7.92589980476517	7.96716913622687	7.74238232128547	7.90447670412414	-0.113352390590295	0.601085106541536	0.881863080585231
Merged-chr4-105253310-2	chr4	105252810	105253810	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95963.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.99542910244343	4.21547613799084	4.20845952529979	4.80119300836916	5.05426181221026	4.75850545574502	1.87211623068817	2.80526500068775e-05	0.000974209057500945
Merged-chr15-61987209-4	chr15	61986714	61987714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177353, intron 1 of 2)	CpG	1873.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	7.13009966211168	7.02856789115566	7.10182930138235	7.09560281487871	6.93930088407664	6.94667734812316	-0.137980775282983	0.564823511931794	0.866552670637515
Merged-chr8-125574437-4	chr8	125573895	125574895	+	780.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4532.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.36854286407276	2.20102747683299	2.07241990472829	2.33588778025341	2.13328354710672	2.4194901944073	0.519311655820768	0.572716639038203	1
Merged-chr17-43038912-4	chr17	43038407	43039407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 2 of 5)	intron (NM_178589, intron 2 of 5)	22352.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.88020286667215	8.06001996586052	7.53829899516626	7.72009814162175	8.21078065662709	7.32329451467186	-0.0487733673598985	0.873662667068877	0.970440430875665
Merged-chr6-58916748-4	chr6	58916233	58917233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 24 of 25)	intron (NM_001361966, intron 24 of 25)	-9607.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	5.49385963164306	5.63832507415666	5.46116305822743	5.45448530857814	5.4612224625443	5.52412655117824	-0.115717769149638	0.722556727152041	0.928821151735982
Merged-chr13-113591516-4	chr13	113591022	113592022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_130796)	TTS (NM_130796)	27042.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.28243473340308	8.28923238804714	8.03442317042579	8.01774049824972	8.31187897971733	7.91184905496345	-0.157950350304669	0.500432963687524	0.834978949366358
Merged-chr1-95647054-4	chr1	95646554	95647554	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	20540.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.07024504720794	5.91607774581162	5.46871114402705	5.43680456945441	5.67016627936577	5.26393772181682	-0.685290330639317	0.0590583416764329	0.314644824497861
Merged-chr17-87247675-2	chr17	87247176	87248176	+	902.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18271.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	6.16947718861119	6.27002638605081	6.4365816816002	5.84887326969364	5.89838282286137	6.21958037760994	-0.513771108839199	0.0868186060606941	0.390381117162834
Merged-chr11-70653915-5	chr11	70653419	70654419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011072, intron 1 of 2)	CpG	731.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	6.96196266273549	6.99544281869057	7.51766336173624	7.15400762979519	7.23208770040533	7.55631890886438	0.216995962189853	0.444708778955825	0.804489346571442
Merged-chr19-3578327-2	chr19	3577827	3578827	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2578.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	2.07859412144453	2.0927757636774	2.10666807893604	2.25682807204652	2.1866499585512	2.56736648330822	1.79162448675389	0.0523402552169778	1
Merged-chr13-110545617-4	chr13	110545123	110546123	+	988.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150579.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.06009687826181	3.64696297803094	3.74559212880988	4.00338455318064	3.78604172392195	3.76291979159406	0.0686053928087844	0.900343359602631	0.976731943826834
Merged-chr11-60222969-4	chr11	60222468	60223468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358315)	promoter-TSS (NM_001358315)	-387.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	7.88912201760805	8.00224173650846	7.58554367211216	7.92380914125591	8.19143228830473	7.45033642657936	0.0835588740231258	0.765894977459631	0.942315053650124
Merged-chr12-111375686-3	chr12	111375142	111376142	+	804.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	2076.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	6.36349676348879	6.44960266770481	6.07787192422709	6.26867812441673	6.42923523310882	6.22790891215502	0.000863271407259818	0.997609466841273	0.99951942247262
Merged-chr17-40880454-4	chr17	40879943	40880943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027834, exon 1 of 2)	exon (NM_027834, exon 1 of 2)	115.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	5.0416705649449	5.3385116283915	4.9748445100256	6.49131168116475	6.62777528843218	6.41604947972762	2.46459752916522	3.53443191014603e-13	7.27952995988691e-11
Merged-chr12-5277147-4	chr12	5276627	5277627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	98555.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	4.12680248459109	3.85491629062627	4.08823070353143	4.19846187155721	4.22355307091376	4.53713197785701	0.822539143413039	0.0930461830524049	0.406374548333771
Merged-chr13-98813790-2	chr13	98813299	98814299	+	556.5	f0_balb.idr|f0_c57.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1650.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	6.1191541790962	6.16810063029629	6.1521633955609	6.27255394789374	6.39283452209688	6.21266111442462	0.259530533056808	0.348776963602388	0.736694000216487
Merged-chr10-96623838-1	chr10	96623338	96624338	+	800.0	f0_balb.idr	Intergenic	Intergenic	6837.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.30827573332081	3.22478794849965	3.25057051912603	3.23694365003045	3.46335335760365	3.07930707386826	0.0703724451980821	0.913276517624819	0.980560320145079
Merged-chr10-24823967-5	chr10	24823459	24824459	+	969.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134005, intron 4 of 24)	intron (NM_134005, intron 4 of 24)	12236.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	5.23036730782398	5.27097490232636	5.15698482398092	5.28899740231205	4.93638545079876	5.15400403313812	-0.19715489677003	0.589138226341605	0.876753289776615
Merged-chr18-64886673-4	chr18	64886179	64887179	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1077.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.25159412170034	5.42688339108831	5.56103576278916	5.38752025166163	5.70584677725594	5.87041992674435	0.478345377356963	0.169785338584465	0.546873733675896
Merged-chr9-46099331-4	chr9	46098837	46099837	+	995.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86517.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.0181513325458	5.15295164714576	5.44602107897999	5.32865207270309	5.15097927646987	5.17597081934685	0.0290931194993595	0.93697216116413	0.986037792257163
Merged-chr6-3481901-4	chr6	3481397	3482397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 3 of 9)	intron (NM_178899, intron 3 of 9)	12601.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	3.8908839760874	3.86137820528786	3.87792629804393	3.8689490532788	3.4850820808149	4.25841345922071	0.0779843975153091	0.893104686045578	0.975200520944414
Merged-chr14-75229164-2	chr14	75228664	75229664	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 16 of 16)	intron (NM_008879, intron 16 of 16)	-13123.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	2.61473239195744	2.3468485382576	2.65945496604632	2.37747956623912	2.37130807467182	2.48515038476636	-0.827475361920231	0.316004185221767	1
Merged-chr13-111508786-4	chr13	111508295	111509295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18668.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	4.72546754654263	4.94245973222199	5.17887661153668	5.07483537088018	5.31805122503032	5.00723824756153	0.420635102446714	0.283030099308443	0.681020459305887
Merged-chr4-146494179-2	chr4	146493714	146494714	+	567.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7786.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.92522411814334	4.0063619913301	3.88841133953989	3.76085442655377	3.53763561016819	3.80675857909347	-0.796815140348079	0.13429515633992	0.489993860307513
Merged-chr1-152536679-4	chr1	152536157	152537157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	88560.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.44760894227403	6.16379428402536	6.28494198515634	6.37209036110864	6.20858937467318	6.264594258834	-0.0383470193217441	0.891811767844106	0.974942585822634
Merged-chr6-34875485-4	chr6	34874995	34875995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197986)	TTS (NM_197986)	2570.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	7.43333975066822	7.30058631869204	6.87877440715681	6.4811184911776	6.59855573757277	6.48179250108673	-1.09486354666303	7.08220949399762e-05	0.00211066077212233
Merged-chr11-106564462-4	chr11	106563964	106564964	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	48466.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.81226129144497	5.81838972863506	5.75587933629415	5.72330871973234	5.38696156445378	5.48421651765821	-0.482199123401294	0.13564313867502	0.49234838086159
Merged-chr6-82773526-4	chr6	82773040	82774040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	CpG	914.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	7.87806036335547	8.25107418514279	7.73223332678786	7.97629085342267	8.11209854633477	7.69656034697386	-0.0488090553245369	0.850522406750269	0.964967504399978
Merged-chr8-108781389-4	chr8	108780873	108781873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	66729.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.24219117900797	5.04478329164691	4.9945977300687	4.46460383285907	4.0924603903317	4.46938878187799	-1.8272585101987	2.58579502324614e-05	0.000910147344730394
Merged-chr10-84110734-3	chr10	84110218	84111218	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10021.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	3.75306052011516	3.79938173262861	3.75744831436704	3.90356010047299	3.5815885251274	3.87769246436445	0.0575747359742934	0.914901961950426	0.980959026698783
Merged-chr6-88832112-4	chr6	88831608	88832608	+	932.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9827.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	4.75350488089467	4.67272578424742	4.57723795496952	4.55422154046543	5.00868676218559	4.64479212703634	0.210346188465911	0.62245710713581	0.891161426909556
Merged-chr10-119000293-2	chr10	118999793	119000793	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50206.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	4.25971061033604	4.08304692799214	3.74760307013001	4.08612671022591	3.77582119093381	3.51727146807144	-0.706763790893228	0.232687166748221	0.628965135652341
Merged-chr6-38692255-4	chr6	38691744	38692744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29175.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	5.28910451019139	5.11519432623701	4.99309025476293	4.96342790279326	5.01647250461593	4.65430973051784	-0.520328732024085	0.185404368195833	0.569470877644115
Merged-chr18-23842490-3	chr18	23841961	23842961	+	725.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	38491.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.44456438229748	5.9028893692888	5.87474556145627	5.7178276691903	5.81012113415222	5.81534513623973	0.0496898808802401	0.88035651996484	0.972509150541233
Merged-chr12-8929458-2	chr12	8928958	8929958	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	8151.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	5.39639377988877	5.51343992301835	5.49946761954409	5.53771139308426	5.60352915732496	5.59026821855795	0.206073820380769	0.522367441454285	0.847587801886238
Merged-chr3-52197213-2	chr3	52196713	52197713	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-71124.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	2.89616982666073	2.82189270692546	2.81315871264561	2.99496678290643	3.16093813727698	3.01173218802618	1.03444520016706	0.13513622910556	0.491294119824757
Merged-chr11-90247983-4	chr11	90247478	90248478	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1498.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.57115995009964	4.30111089365516	4.55471311122761	4.51284144650138	4.29469274259008	4.97454303718305	0.328934741684847	0.48725506749417	0.828377944172883
Merged-chr4-133757534-4	chr4	133757026	133758026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3915.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	6.90010147992392	7.30098362252381	7.09952852652344	7.01277382084773	7.12997512923288	7.16961294804113	-0.0125902110919809	0.960560916740663	0.990386809359123
Merged-chr13-75838932-1	chr13	75838432	75839432	+	556.0	f1_balb.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-953.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.35843761883075	3.52203306209495	3.57725851627147	3.42592317744461	3.23523912519577	3.32065570976986	-0.613057122654207	0.307915386776549	0.703947279446131
Merged-chr10-87908985-4	chr10	87908474	87909474	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	47863.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.57718478587812	5.88109308281963	5.80310229812983	5.80623346018112	6.06520766907568	5.73493450542742	0.229242368533221	0.476432761487276	0.82257619929543
Merged-chr9-65550387-3	chr9	65549891	65550891	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29696.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.26747509783202	6.9586508540365	6.98663973531011	6.22619085205411	6.06397105747054	6.63763387573091	-1.20731108979856	3.91763217053097e-05	0.00128896139836117
Merged-chr5-101951255-2	chr5	101950755	101951755	+	576.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 9 of 67)	exon (NM_172882, exon 9 of 67)	118666.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.0116209875478	3.71459174119137	4.24284540667655	4.63370683491646	4.02044427189652	4.5178530311826	1.13099791994165	0.0354998228624632	0.231299261032215
Merged-chr4-103359304-3	chr4	103358835	103359835	+	892.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-23165.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	4.07417155790403	3.97298951132116	4.00488934733743	3.82768336235612	3.80018920324798	3.82422645227356	-0.627080320415133	0.213252252498048	0.606083325313929
Merged-chr4-139279353-2	chr4	139278853	139279853	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 4 of 9)	intron (NM_001037761, intron 4 of 9)	31355.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	2.78555649686408	2.73751726305642	2.90922643313032	2.61166602151869	2.4605274503848	3.09233125718083	-0.317376975748948	0.696619424551127	0.919557532768306
Merged-chr18-36708978-4	chr18	36708471	36709471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER4B-int|LTR|ERV1	-13046.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	5.3716410775332	5.5136036665161	5.48856111463577	4.63036571827017	5.04563983942221	5.0922793251747	-1.06517288137724	0.00520297766428069	0.062843571706992
Merged-chr6-38936063-2	chr6	38935563	38936563	+	627.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	17077.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.29204147288534	3.20755984748411	3.37286372874315	3.32761901887897	3.11675885404729	3.33407692174098	-0.127174953064481	0.83796232421712	0.962298455078579
Merged-chr5-113999594-4	chr5	113999102	114000102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4133.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	4.83304168279056	5.11730818407064	5.0495932319038	4.82530114011121	4.9342820636438	5.1462379807878	-0.0792568324111273	0.837541668897314	0.962141375366527
Merged-chr6-116632325-4	chr6	116631843	116632843	+	821.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178045)	TTS (NM_178045)	-3344.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	3.07452387645806	2.83111078856777	3.06363242097461	3.19680438769689	3.08856655728944	3.35945992337617	0.984326241345329	0.145317959550805	0.508338649447163
Merged-chr5-121383393-2	chr5	121382893	121383893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2016.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	7.09432656516598	7.25916845282288	6.70220448831298	6.96276555887748	7.36252818121209	6.6561339047721	-0.0120886661530973	0.969000419246418	0.992925679234087
Merged-chr16-4077808-4	chr16	4077316	4078316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026508)	promoter-TSS (NM_026508)	-6.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	7.18214926775529	7.48700403619715	7.2275334109065	7.42604062690339	7.48010875600082	6.95000046220895	0.0113833686892714	0.966382776762927	0.992302763946523
Merged-chr16-49766520-4	chr16	49766023	49767023	+	732.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	67229.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	2.49824130449366	2.27901791947946	2.52604332437746	2.61819266084678	2.50227720385789	2.78387040871345	1.18530714300246	0.150127079469482	1
Merged-chr18-56675608-3	chr18	56675088	56676088	+	793.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32225.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	2.94564455536544	3.11025033104238	3.12983198021461	3.56772085604638	3.33803734727304	3.48807244850421	1.69353958409608	0.00919237545533721	0.0949806503027069
Merged-chr10-25447366-4	chr10	25446866	25447866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	38998.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.73237850423462	5.8221527971596	5.63136061143535	5.6079840150156	5.63418157031028	5.61013445128525	-0.218258923121688	0.485211730789907	0.827376635767907
Merged-chr3-95649932-2	chr3	95649432	95650432	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8789.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.306324019702	7.15200023081461	7.32901994335913	7.46669351264122	7.46744124385566	7.22408689561483	0.200971239179992	0.396452837188471	0.773652887901204
Merged-chr1-184025375-3	chr1	184024865	184025865	+	763.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8633.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	3.94093766114264	3.69962932174216	3.63635531347325	3.77462392604666	3.7290266179515	4.27292091770224	0.530006992153646	0.351002066516292	0.738927106247438
Merged-chr4-45489849-4	chr4	45489347	45490347	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	40981.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.51883771953004	3.61383192361921	3.42055330480309	3.58711095016207	3.28565765714338	3.43548762467247	-0.316663498187567	0.593892005898192	0.878686007801027
Merged-chr7-81344405-3	chr7	81343921	81344921	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 2 of 4)	intron (NM_009092, intron 2 of 4)	813.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	6.07738055309099	6.0896967883816	6.49378224989901	6.14627342157803	6.08636698362683	6.07579191272178	-0.201369565975712	0.501740296184736	0.835945828459804
Merged-chr10-80171126-4	chr10	80170645	80171645	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007705, exon 7 of 7)	3' UTR (NM_007705, exon 7 of 7)	-1799.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	4.99205498346464	5.18868547570925	5.18422746951128	5.4337415837483	5.64498297496486	5.63171998757808	0.891755985171201	0.00978791909470048	0.0989951588710147
Merged-chr2-27742921-2	chr2	27742421	27743421	+	678.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	32338.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.64650757635214	5.48147009319934	5.95210588063404	5.46167841362106	5.42442461814721	5.65921807558911	-0.345713325168504	0.31183729683703	0.706723622367304
Merged-chr16-44770000-2	chr16	44769500	44770500	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	4264.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	3.20878487777195	3.23237588705013	3.14405650400923	3.14911464091346	3.08922459043752	3.38369811605168	0.0343547382121156	0.957096183132798	0.989887454023164
Merged-chr14-51163580-4	chr14	51163079	51164079	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019398)	TTS (NM_019398)	1319.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	4.23533215440548	4.49098823773557	4.66403485982259	4.73629242718037	5.19297741750197	5.35163344537879	1.47844873064027	0.000837290561608738	0.0156770613395431
Merged-chr11-103177815-2	chr11	103177315	103178315	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	6677.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	3.89037428292759	3.54974854592875	3.68529658192094	3.49798517176763	3.51733909762855	3.54077651173435	-0.699075805233409	0.219125623733747	0.613224645184221
Merged-chr8-68183975-4	chr8	68183473	68184473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92555.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.41038147362553	5.33120338355019	5.03788862983641	5.39729310726146	5.36527233312106	5.10415247474364	0.0459803809267122	0.899610995708246	0.976656120908248
Merged-chr19-55791004-3	chr19	55790495	55791495	+	787.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	49185.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.36802323643153	4.49774384506812	4.55639964996663	4.76887012516625	4.49603281785767	4.54011625069195	0.330042282867898	0.441000079880846	0.802167900847268
Merged-chr19-4147953-2	chr19	4147453	4148453	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-710.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	6.23661728189145	6.06228371689376	6.51564891985716	6.43001575841322	6.75311660296542	6.45181211507771	0.469042704771655	0.113052952094296	0.449191427529329
Merged-chr11-86756292-3	chr11	86755793	86756793	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	1274.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	8.04416721896183	8.02827360815771	7.67374256482301	8.3090325229885	8.53766952999906	7.71087564658389	0.435997364075214	0.126954961821192	0.476227051808573
Merged-chr19-56741247-2	chr19	56740747	56741747	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER110|LTR|ERV1	18875.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.39398121110162	4.74446546742439	4.58565590161348	4.54228459817918	4.5062732890823	4.72964669777155	0.0102988422334674	0.980918618496668	0.995645370999113
Merged-chr16-38753276-2	chr16	38752776	38753776	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 2 of 6)	intron (NR_152434, intron 2 of 6)	11017.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	4.19516243152892	4.29910059891945	4.37137197829059	4.38042872517656	4.4554349597514	4.21197118256483	0.199715594803379	0.659208264617453	0.905273081518527
Merged-chr4-139197152-1	chr4	139196652	139197652	+	729.0	f0_balb.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3041.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.77755999942084	6.67406627156627	6.55383168765132	6.72982230776686	6.92320840666437	6.89775872518052	0.275220757228443	0.283155201891234	0.68116389716285
Merged-chr3-65319810-4	chr3	65319323	65320323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-17138.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	5.3859957958707	5.56723247858473	5.35180757692524	5.47781115350062	6.03610907879621	5.75953318711188	0.636998385484391	0.0690819864216032	0.34395473619309
Merged-chr9-13827572-4	chr9	13827074	13828074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-142.0	NM_001358259	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	7.61355086087934	8.20006811046727	7.86695521481055	7.63646080631864	7.81896686336725	7.93106913733609	-0.172407209538168	0.505015940030692	0.837928144581384
Merged-chr3-95229493-2	chr3	95228993	95229993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	550.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	7.06154839733897	7.04147540366579	6.99925221868816	7.33469637022925	7.56613508648743	7.3522759277729	0.584707415419185	0.0133919205001468	0.123115116669563
Merged-chr2-144258071-1	chr2	144257571	144258571	+	802.666687	f0_balb.idr	intron (NM_024225, intron 4 of 12)	intron (NM_024225, intron 4 of 12)	8131.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	3.91266516565943	3.86223153017238	3.90244830667736	3.9910938924394	3.96011089744579	3.81761457156855	0.116791348350521	0.816961420666679	0.956754861188725
Merged-chr3-97610131-4	chr3	97609611	97610611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026539)	promoter-TSS (NM_026539)	79.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	6.38055800698277	6.31825326109467	6.27507108914553	6.36305308879798	6.16722890702931	6.10013354617283	-0.183019998160705	0.51232596529813	0.841860053306022
Merged-chr5-120167940-4	chr5	120167412	120168412	+	904.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-28649.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	5.08827524790443	5.2292554212365	5.46882659318078	4.96859372869934	4.67154158833453	4.94288278152449	-0.860987137954232	0.0265433210291552	0.193639947432708
Merged-chr2-167421541-4	chr2	167421041	167422041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-169.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	9.13615533181863	9.08570343660517	8.65599099129604	8.84905857782887	9.05810687808004	8.66007007032561	-0.152190425228451	0.525881361989922	0.849232161791278
Merged-chr13-23799582-4	chr13	23799086	23800086	+	979.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7441.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	3.3951925881059	3.20665284632144	3.39302183550179	3.13312730448132	3.2318946150572	3.05804149409089	-0.762585660214972	0.236066604361309	0.632388848256521
Merged-chr8-107293402-4	chr8	107292900	107293900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133957)	promoter-TSS (NM_133957)	-70.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	7.55820781575445	7.76875540285864	7.83980788299321	7.58748215472562	7.78212958404483	7.58173848382072	-0.0952131725139914	0.680374272646165	0.914217125833247
Merged-chr18-82685607-2	chr18	82685107	82686107	+	650.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	7127.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	3.6266589859736	3.81678236972231	3.72006064149717	3.396666479307	3.36155361342731	3.636276742282	-0.943200869534981	0.101068951465485	0.423988776066131
Merged-chr16-23108132-7	chr16	23107642	23108642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030705)	promoter-TSS (NR_030705)	674.0	NM_001347179	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	8.18505296383469	8.72133695579068	8.2901274974261	8.07111611036362	8.54531166262877	8.30251225138508	-0.139593395830448	0.592293690698344	0.878003422897225
Merged-chr11-69578615-2	chr11	69578115	69579115	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144824, intron 1 of 9)	intron (NM_144824, intron 1 of 9)	709.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	3.67769342581211	3.55995378958127	3.6184128657607	3.3901432073546	3.26297210692646	3.63685261838997	-0.701547855760898	0.235016130330647	0.631139367820568
Merged-chr7-63916550-4	chr7	63916058	63917058	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256311)	promoter-TSS (NM_001256311)	-299.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.67178898306835	4.52312834425101	4.6837778920609	4.43411373544049	4.14837877425676	4.85567218386878	-0.310871242808598	0.509718901104749	0.840498936388386
Merged-chr2-70992940-4	chr2	70992439	70993439	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	B4A|SINE|B4	25435.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.78394333400359	4.8829686264836	4.84563195722834	5.20103814505276	5.46399232843946	5.29408244228655	1.0345610412489	0.00488457619760024	0.0602573485915375
Merged-chr4-95212964-6	chr4	95212456	95213456	+	988.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160734.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.93369237933378	6.0146371284405	4.9549129583263	5.05269028896822	4.90632739474459	4.80652299302461	-1.57091800595297	0.000377394929481048	0.00840532047437341
Merged-chr7-30594279-3	chr7	30593765	30594765	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1323.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	3.14057719315561	3.26507630711831	3.2669163124926	3.41043119569202	3.00541898626784	3.60195739184088	0.523338186009814	0.43331805784742	0.797793107392544
Merged-chr12-83856376-2	chr12	83855876	83856876	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	-14018.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	4.05107789808422	3.95290098341895	4.1319469173893	4.25380097082377	4.21856363557536	4.37561313126364	0.668270959632517	0.15513745348317	0.524652239013917
Merged-chr10-3832156-4	chr10	3831650	3832650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-40517.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	3.66349614839805	3.76089600164613	3.73516704963569	4.10544362497266	4.09763376859307	4.01130372831462	1.10675816916178	0.0298627597986557	0.208318286160843
Merged-chr2-59889905-4	chr2	59889415	59890415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A3|LTR|ERVK	-7309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.68094640719591	5.09427183903838	5.10628567952277	4.83956902935376	4.83560682058077	4.9329927280963	-0.229191025853932	0.5666128456364	0.867510884287005
Merged-chr4-40239823-4	chr4	40239335	40240335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-10.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	6.63202230667401	6.67207462127661	6.81664805699379	6.85051704973749	6.97693757733143	6.47265810121502	0.144516887021176	0.601277252701303	0.881900154109218
Merged-chr11-97149360-2	chr11	97148860	97149860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 1 of 8)	intron (NM_198100, intron 1 of 8)	352.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	4.87531257964864	4.65210021487944	5.13405472846251	5.1389796662737	5.05172153328813	4.92377363210345	0.337311619449064	0.394668365958659	0.772514857254462
Merged-chr11-101580044-4	chr11	101579558	101580558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 23 of 23)	intron (NM_008676, intron 23 of 23)	-2184.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	6.0544943918176	5.96253893792905	6.03644531544414	6.01366375102983	5.96373236279417	6.02986040870468	-0.0294298901005307	0.918460436181582	0.981774101853545
Merged-chr7-133638243-3	chr7	133637794	133638794	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178115, intron 1 of 24)	CpG	619.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	6.11453845577863	6.19273831180806	6.42143048746546	6.25828644714124	6.00901962025752	6.10903636352842	-0.192382787219701	0.510568529835565	0.840938780073986
Merged-chr1-171562910-1	chr1	171562410	171563410	+	862.0	f0_balb.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	3717.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	3.57262735313104	3.91238926377044	3.64655812148348	3.5891574563336	3.50693965660846	3.55365703209895	-0.606944022726308	0.28436829880631	0.682070779368582
Merged-chr7-132736238-3	chr7	132735751	132736751	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	40665.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.16828772471268	4.49143999654152	4.57330363072438	4.16888757738821	4.02121919083369	4.2305077338762	-0.774559219416542	0.104739102439892	0.431848334364925
Merged-chr4-135964527-2	chr4	135964027	135965027	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356493, intron 1 of 10)	intron (NM_001356493, intron 1 of 10)	802.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	3.76695539568137	3.62361991774934	3.91197445063581	3.61622795779793	3.58972773783851	3.83811524886662	-0.293105811303149	0.593140678980151	0.878410931874355
Merged-chr4-129515182-2	chr4	129514714	129515714	+	932.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008228)	TTS (NM_008228)	1633.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	3.49080147149131	3.20765044723157	3.44117790957283	3.2218114564875	3.08777522808928	3.71024830918508	-0.0867062854006595	0.89657120203042	0.975838835430135
Merged-chr10-79681920-4	chr10	79681429	79682429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177613)	promoter-TSS (NM_177613)	-266.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	6.47583512376646	6.32663793511176	6.62808613111219	6.82238092420256	6.44695075937653	6.68692255889446	0.289959031371634	0.30046123674539	0.697311691851564
Merged-chr6-91720114-2	chr6	91719614	91720614	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	36047.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.52937200005415	2.35877743967675	2.63522052175593	2.35430442743772	2.34918365866914	2.4609730400762	-0.765141606226359	0.351356848102936	1
Merged-chr2-131089832-4	chr2	131089331	131090331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3066.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	6.86167331390165	6.73261654557242	6.96096587460152	6.69529628177755	7.04817268853267	6.67588826019197	-0.0324805926907669	0.904005283853999	0.97795610352753
Merged-chr6-34781144-2	chr6	34780644	34781644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178630, intron 1 of 18)	intron (NM_178630, intron 1 of 18)	712.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	7.42523186965051	7.53087932458101	7.14125943440243	7.4901364583764	7.46707008659231	7.10612794559559	-0.0147418054269631	0.954512136625849	0.989606357454991
Merged-chr18-6760969-3	chr18	6760458	6761458	+	827.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4209.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	3.80601246324033	4.09131897395909	4.13966866585711	3.83296684512779	4.04087193039109	3.97485030944794	-0.183110191955773	0.720965800241813	0.928324696220711
Merged-chr5-105515903-1	chr5	105515403	105516403	+	562.0	f1_balb.idr	Intergenic	Intergenic	-3568.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.85453093718868	5.58792434921707	5.12914745479228	5.18127389283638	4.9811404482386	4.74610969641709	-1.15910515502334	0.00455585863521157	0.0573459282715489
Merged-chr5-135675046-2	chr5	135674546	135675546	+	660.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14099.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	2.87562676297567	2.43547987653996	2.62212553939699	2.4497342480444	2.33240031272007	2.29305311076844	-1.8763415479758	0.0356398141304339	1
Merged-chr12-41484348-3	chr12	41483833	41484833	+	834.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1724.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.27850972017913	2.41014791135276	2.55668673342565	2.3265698435539	2.1803708401355	2.38051424156053	-0.804947452522347	0.346986524139719	1
Merged-chr1-119504328-4	chr1	119503835	119504835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	447.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	7.10963143569273	7.36516335242653	7.552532060911	7.16577920620146	7.4174038174255	7.43456369142071	-0.00659913045439975	0.979362941451649	0.995221944653849
Merged-chr17-66077104-4	chr17	66076606	66077606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025572)	promoter-TSS (NM_001025572)	-60.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	7.69406859548393	7.90194901152566	7.40848225728025	7.57996679022396	7.50154593658725	7.44379649417121	-0.264089649967828	0.281972697079207	0.679908771156903
Merged-chr8-41284619-4	chr8	41284174	41285174	+	995.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 16 of 37)	RCHARR1|DNA|hAT-Charlie	44915.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	5.55817210353294	5.6335213103236	5.53832784166719	6.32572844500239	6.70672256105222	6.08178134724337	1.43767656338856	9.26655820854891e-06	0.000374660726636024
Merged-chr8-84903217-4	chr8	84902723	84903723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010635, exon 2 of 3)	exon (NM_010635, exon 2 of 3)	1295.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	5.49974422285784	5.81369106385038	5.6113440593524	5.75702554679252	5.61708850842256	5.50021286637869	-0.0351181536921847	0.915019315656262	0.980959026698783
Merged-chr8-70585455-4	chr8	70584942	70585942	+	879.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 7 of 11)	intron (NM_007924, intron 7 of 11)	-9039.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	2.33386697095716	2.11391755570354	2.41754685980325	2.35703884871713	2.22288149672926	2.55370537969811	0.576197182174269	0.512246316180964	1
Merged-chr11-105599600-2	chr11	105599100	105600100	+	733.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	9614.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	3.12252523435833	3.53883985619361	3.37106927148315	3.29829660926234	3.39223341429089	3.32957314688245	-0.0609086431492915	0.922995912928094	0.982633177959017
Merged-chr15-95819830-2	chr15	95819330	95820330	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	RMER17B|LTR|ERVK	10242.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.03714896922339	4.3052589997932	4.74350769907802	4.55932784691173	4.27539533607978	4.90777481513365	0.524488299516735	0.306343466613242	0.702504893198242
Merged-chr14-74939535-4	chr14	74939043	74940043	+	803.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	8334.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.47951230077569	5.53589614841294	5.64947713792951	5.43328976101343	5.39086644264937	5.52223666458457	-0.204793425639634	0.530549936005958	0.851204116136432
Merged-chr11-100628769-1	chr11	100628269	100629269	+	614.0	f1_c57bl6.idr	3' UTR (NM_177790, exon 8 of 8)	3' UTR (NM_177790, exon 8 of 8)	5814.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	3.26457640810309	2.94464445517183	3.2707734714711	3.43234055766092	3.69694197354588	3.56516420841765	1.62015700511395	0.0129607587141399	0.120684737140348
Merged-chr4-16168611-4	chr4	16168097	16169097	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4487.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	5.83841754162414	6.40348883869866	6.43544120208527	6.291546962023	6.54864966551592	6.26766375970785	0.218000990254005	0.496618210087359	0.833150692063167
Merged-chr9-70832355-4	chr9	70831830	70832830	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102478.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.62027160982519	5.69560263175257	6.17251905167988	5.79514682395688	5.858533890888	5.79389459566513	-0.0369365386131946	0.911646439914888	0.980154516820379
Merged-chr1-153500656-1	chr1	153500156	153501156	+	835.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12996.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	5.06634857638245	5.48113692271043	5.21435240978699	4.6853411167183	4.75980667682633	5.08309612299249	-0.908279924847792	0.0220338288283643	0.172230232893428
Merged-chr11-121706171-2	chr11	121705671	121706671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	3744.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.84238560500712	6.89871533267617	6.35248248928932	6.67659226207368	6.7667055052526	6.30705372260193	-0.193041672690382	0.526000685512349	0.849272421520383
Merged-chr8-71290596-2	chr8	71290096	71291096	+	770.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	17882.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.4590412174251	6.60217113938832	6.69446920454214	5.88733079518779	6.16516141446739	6.09786291900546	-0.868545409778116	0.00232730591064137	0.034707086781019
Merged-chr2-31036999-2	chr2	31036499	31037499	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 12 of 15)	intron (NM_001355105, intron 12 of 15)	54720.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	2.48110221005065	2.41071021309084	2.63268431984705	2.59891741435191	2.37059938381465	2.58250750197972	0.0627715996197776	0.937462333477581	1
Merged-chr9-59293777-3	chr9	59293241	59294241	+	633.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2169.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	5.6389834962774	5.46042140539987	5.77319158903648	5.82565449133214	5.91502041464276	5.88335221087032	0.463836750794895	0.138446515713736	0.497209965018279
Merged-chr19-27411329-1	chr19	27410829	27411829	+	849.0	f0_c57.idr	intron (NM_177474, intron 13 of 17)	intron (NM_177474, intron 13 of 17)	18579.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	3.59609492862465	3.63515774313555	3.97026587399103	4.29295714522204	4.29918891284592	4.22624492508448	1.66092403526512	0.00132652233787204	0.0224771411566475
Merged-chr15-83410407-4	chr15	83409923	83410923	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	22427.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	3.37939801890824	3.36490077178466	3.37869153961558	3.37124863692425	3.04377277655575	3.16024140145374	-0.726058940113504	0.253059862385454	0.650437247995826
Merged-chr4-83271830-3	chr4	83271296	83272296	+	714.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	B1F2|SINE|Alu	52393.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	3.78009088093457	3.63780573081147	3.65261640917554	3.47196048553475	3.4155763746827	3.87002363292565	-0.350862898180327	0.545652260649598	0.85830529139347
Merged-chr9-90234410-2	chr9	90233910	90234910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36359.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.35225244760795	7.15803213408507	7.41939556023304	7.43016211876109	7.50681089959632	7.19306221504771	0.119664102418269	0.623469792969105	0.891427938597819
Merged-chr19-5433668-2	chr19	5433168	5434168	+	871.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8524.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	5.25901496893172	5.27978632487713	5.37540102515924	5.62379569681088	5.48567991795013	6.0905396028291	0.841403976097837	0.0192034342729056	0.157256112486953
Merged-chr13-23538420-4	chr13	23537909	23538909	+	907.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2991.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	2.74742212216368	2.63840077362028	2.97650064016258	2.7818895768176	2.85179965241267	3.1036286610337	0.625340187129687	0.395957505616981	0.773231268695054
Merged-chr19-12814025-1	chr19	12813525	12814525	+	710.0	f0_balb.idr	intron (NM_134152, intron 3 of 8)	intron (NM_134152, intron 3 of 8)	15446.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	4.45567937909417	4.5933475539078	4.96138644162183	4.64461336654943	4.37680804237342	4.67400269845321	-0.269230005927972	0.5455812462634	0.858209810368924
Merged-chr10-94055126-3	chr10	94054625	94055625	+	648.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	19124.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.75379765833328	3.61020864765956	3.62196789028314	3.99298846186828	4.07605971001146	3.85694068998706	1.02011578685435	0.053584932006606	0.29681126687492
Merged-chr9-14885299-3	chr9	14884788	14885788	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_176807)	TTS (NM_176807)	18663.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	4.09750723553413	4.35822093464811	4.12953118028976	4.19058844245314	4.08280232731661	4.1019661948818	-0.224849513937142	0.637062022344858	0.897280781950183
Merged-chr10-25298397-4	chr10	25297897	25298897	+	896.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	Lx5c|LINE|L1	766.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.67439924622861	5.88407888973253	5.57753314738953	5.48339301889568	5.37731859667495	5.40162572946347	-0.575367655031245	0.0798009830341795	0.373590494619515
Merged-chr10-100030915-3	chr10	100030412	100031412	+	587.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15091.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.70589710178921	3.49883502251074	3.47134904429312	3.54755060144732	3.22939250814311	3.37118582995301	-0.670401938775977	0.267312939556435	0.664592299348985
Merged-chr15-76702157-4	chr15	76701668	76702668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027122, exon 1 of 5)	exon (NM_027122, exon 1 of 5)	626.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	5.18108252321226	5.4169763097422	5.71539580948354	5.55518013768977	5.49877872725661	5.54238222086247	0.167385495393285	0.632732497513449	0.895673094742185
Merged-chr1-24679707-1	chr1	24679207	24680207	+	888.0	f0_balb.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	789.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	7.44230731582463	7.41318117014751	7.04858554141714	7.38637193325724	7.41513266775855	7.00786593199003	-0.0447594635628179	0.865819741384716	0.968641478520565
Merged-chr1-155065965-4	chr1	155065448	155066448	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	17316.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.42485578538484	5.7405280547244	5.93262236685814	6.02287952080648	5.91784986207723	5.55452141347293	-0.378029668282776	0.292906630973672	0.690053425164737
Merged-chr13-67526178-4	chr13	67525672	67526672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	59.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	6.89304068646878	7.02441906591497	7.15919515677072	7.18973461491169	7.18525700437027	7.14370679727207	0.227152045106488	0.344300384170543	0.732980075743821
Merged-chr10-119065657-4	chr10	119065188	119066188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15189.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.77616195429345	6.85535922586364	6.39591254681699	7.13855560187015	7.60409236109141	6.65126115747578	0.767958509947981	0.0211571659531736	0.167629543385229
Merged-chr16-36630401-2	chr16	36629901	36630901	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	35676.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.66632282940231	3.55101497983657	3.4485538198205	3.57762489470905	3.42772847940835	3.40483205727603	-0.326943149609395	0.572761915880453	0.869934493236159
Merged-chr2-103683082-4	chr2	103682589	103683589	+	971.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78181.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	4.73125135087375	4.39503355389452	4.60960824331232	5.12596496014852	5.14700554952053	4.95337635981669	1.12364493316824	0.00527434378963142	0.063493853400392
Merged-chr14-75147907-4	chr14	75147413	75148413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	11488.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.7655721025575	5.80408187126309	5.34818878474311	5.73376166566435	5.71667274634774	5.54015479061932	0.00472170620032174	0.9888363965779	0.997430342931925
Merged-chr3-79197222-4	chr3	79196709	79197709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15710.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	5.46205048511001	5.03251918592896	5.25728645003313	5.38142781407673	5.36469323116345	5.63627529338482	0.383846787258177	0.289996736617879	0.687700879517227
Merged-chr7-19024261-4	chr7	19023766	19024766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	-111.0	NM_001360713	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	6.23665080411772	6.04134343008069	6.00844371225846	6.00822078925838	5.59762959538878	6.09136358695266	-0.345314347157658	0.281527402706638	0.67967073158435
Merged-chr18-6136099-4	chr18	6135596	6136596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029277)	promoter-TSS (NM_029277)	2.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	7.79848121053024	7.86242705224188	7.73868721975717	7.90365283300512	8.01209622321059	7.97301039959374	0.230324771146729	0.277348247498777	0.674551767497274
Merged-chr2-45089698-4	chr2	45089197	45090197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	20580.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.66155170890841	7.49417468147878	7.18231092419302	7.26500584710883	7.44969916022805	7.16332420586566	-0.242621509301995	0.345608734533863	0.734019388000757
Merged-chr15-98761876-2	chr15	98761376	98762376	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1116.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	6.27133478823759	6.09889854436424	6.31532577601059	6.21752218632987	6.42820912971049	6.29718277532221	0.158611374028576	0.572347395272537	0.869819295413984
Merged-chr1-131246750-6	chr1	131246311	131247311	+	716.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1633.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	3.01342598814718	2.8733338642892	2.83684773793201	3.202046111941	3.22868437817085	3.21831299273488	1.38256187563196	0.0427404567709111	0.259209032579736
Merged-chr4-134749459-4	chr4	134748978	134749978	+	800.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 6 of 8)	intron (NM_145554, intron 6 of 8)	18526.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	3.50293659756945	3.33663536654835	3.54087432978956	3.66435507901683	3.51732071893786	3.3883831375165	0.266634815552778	0.649196736716752	0.902118776529041
Merged-chr5-134532594-4	chr5	134532085	134533085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	19849.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	6.47451180526974	6.19685395630232	6.07535958488666	6.11896747643891	6.44103868560792	5.86251418373225	-0.146662161004457	0.650838094718144	0.902681635626215
Merged-chr3-152913240-5	chr3	152912706	152913706	+	933.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69001.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	5.62078103085012	5.84894544265933	5.8133927157201	6.08330702788273	6.35136353858283	5.59551319459259	0.525021737889475	0.130704834048426	0.483186228268893
Merged-chr16-36643593-2	chr16	36643093	36644093	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	22484.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.54258557284978	6.37168788057685	6.43290546496621	6.45636597000913	6.50848732881498	6.72561026307554	0.177441263767366	0.510350530722368	0.840886591313675
Merged-chr5-45876471-4	chr5	45875971	45876971	+	908.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-18931.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	2.89965134953803	3.02337038939398	3.06120514990549	2.95769159109111	2.77425521683093	3.01729434450556	-0.381887291902803	0.581219168793279	0.873246537431079
Merged-chr10-81175666-2	chr10	81175166	81176166	+	740.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-965.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	5.47735203875986	5.89584425952223	5.61993101472128	5.60462455212361	5.84653860866296	5.78808982603783	0.128778928170588	0.69880125817089	0.920452394037037
Merged-chr11-3668114-2	chr11	3667614	3668614	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9414.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	4.43232486758466	4.79894181441457	4.90232949354131	4.76445444381598	4.76868100594461	4.74753288315351	0.0954364477762299	0.819755821450211	0.957288083214325
Merged-chr5-20946612-2	chr5	20946112	20947112	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	-4377.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.73023086645233	4.59934483809569	4.69424522501845	4.93365276784603	5.03371689367417	4.9504296444682	0.682452489535373	0.0779369863947929	0.368611422948782
Merged-chr2-166732396-4	chr2	166731903	166732903	+	844.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18571.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.44883063262767	4.0624662018193	4.05350802739538	4.34769709241158	4.32549719167686	4.36045504431171	0.358607580936724	0.452882940620101	0.809457484278845
Merged-chr1-167307433-2	chr1	167306933	167307933	+	884.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1237.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	3.64785555754858	3.80963350495444	3.94126211234949	3.90548217565811	3.70012522311045	3.96246213097288	0.174880790858788	0.742554262176397	0.935293971438121
Merged-chr8-71513212-2	chr8	71512712	71513712	+	829.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1443.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	2.68200576773902	2.54837142650852	2.70455220069743	2.53365480250634	2.60751870125617	2.52621338706562	-0.492187725447074	0.52302982823138	1
Merged-chr16-3929748-3	chr16	3929237	3930237	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20728.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	5.4357007195857	5.82459838732371	5.58452928489386	5.47060046389099	5.60282125940091	5.56274829024717	-0.152408253057132	0.649080011872041	0.902098707664085
Merged-chr3-51709379-4	chr3	51708901	51709901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	RMER15|LTR|ERVL	48222.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	7.30638066117949	7.49916480422348	7.29110031397448	7.26702007726198	7.51038794377464	6.98719929916526	-0.129089967564613	0.620631651712075	0.890240100691087
Merged-chr5-64212812-1	chr5	64212312	64213312	+	939.3333130000001	f0_balb.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17545.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.4492157767197	6.40224917875407	6.4413386701164	6.11008176017194	6.32699693616315	6.14319345319806	-0.372561965921729	0.177245187902846	0.558207507586708
Merged-chr2-32507941-2	chr2	32507441	32508441	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27418.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.35413204126648	4.98523668227802	4.94009956464036	4.82809470460708	5.23274754149597	4.89091966724684	-0.221170200034904	0.586123547123091	0.875350769254566
Merged-chr17-35189379-4	chr17	35188910	35189910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-970.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	6.51258537834075	6.3180900260607	6.89888413018407	6.27852514332279	6.59016955940232	6.77846783013049	-0.0451852085220095	0.884337789464472	0.973466734537782
Merged-chr15-66845503-4	chr15	66844967	66845967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-13638.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.4292531607347	6.34418743078701	6.56713242270755	6.01315063220266	6.53365992652397	6.13035207456421	-0.304475537671469	0.319674615758614	0.713586133471515
Merged-chr4-53269577-2	chr4	53269077	53270077	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	655.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	5.18694759675417	4.8842479648417	5.04930592310682	4.87111651620041	4.59008984799953	4.97634574504574	-0.518529637932841	0.195680947068129	0.58340814806155
Merged-chr10-99484325-2	chr10	99483825	99484825	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124846.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	2.49018839994327	2.38627058633038	2.50257414239566	2.2326609653601	2.25350433358276	2.31983307175026	-1.30109438725462	0.126357722361841	1
Merged-chr13-102025879-3	chr13	102025328	102026328	+	750.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257611.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.11253742853802	4.43845575908606	4.25630086695603	4.42591686527957	4.38718862093489	4.45644619877257	0.370408636076884	0.41511220554234	0.786136540436176
Merged-chr9-95699396-4	chr9	95698894	95699894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR87|LTR|ERVL?	50964.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	4.26979879717711	4.22890045068985	4.24653383454142	4.30010810017276	4.37897312178247	4.56676538438454	0.436146812115898	0.330899776622692	0.722226411767471
Merged-chr8-117369135-2	chr8	117368635	117369635	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	19965.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.39675405853775	3.2830396975448	3.6367417606603	3.47414883615187	3.33939973735989	3.39081050998208	-0.143370071280543	0.81176007010842	0.955306974300267
Merged-chr5-125395208-2	chr5	125394708	125395708	+	943.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5191.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	5.59222108204573	5.48187795933776	5.30699015159987	5.10302388417467	5.00883932183778	5.13877537042856	-0.794154078605993	0.0236249995326449	0.180248391812976
Merged-chr12-87199682-2	chr12	87199182	87200182	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	547.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	4.78793020127979	4.5617922238126	4.46786585295946	4.76538253108747	4.20175560268589	4.4008151903089	-0.345953364212088	0.45802425428296	0.812780596083952
Merged-chr9-116175774-4	chr9	116175269	116176269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	-406.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	8.65038656242565	8.9143655704342	8.33662218636524	8.23247139381055	8.52016988991363	7.91674207851784	-0.56338581047184	0.0364763027235298	0.235007371042932
Merged-chr10-40476734-4	chr10	40476230	40477230	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198164, intron 9 of 11)	intron (NM_198164, intron 9 of 11)	-93632.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	4.93832922984845	5.05662501142019	4.89042515127893	4.87706846938485	4.78427895595868	4.80327894441779	-0.326175698143916	0.392584073643949	0.771214636708298
Merged-chr10-62337351-4	chr10	62336858	62337858	+	867.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3063.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	4.74612567834466	5.21154219355855	5.22535171595017	5.22416841129092	5.10869499434487	5.22599035157661	0.22590869217237	0.558761812675544	0.864817486823286
Merged-chr10-61423450-3	chr10	61422956	61423956	+	735.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5484.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	4.60681143647991	4.76500003474629	4.57676340943755	4.69295906724275	4.79954886978638	4.76479445653443	0.22649424344698	0.574540617213739	0.870773088875341
Merged-chr16-21704684-4	chr16	21704195	21705195	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10030.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.17500614342444	4.30734281566994	3.85214160253271	3.83317664360196	3.8984469359186	3.81470191182097	-0.846762641337823	0.104529146183719	0.431477767500342
Merged-chr2-170176507-3	chr2	170176027	170177027	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33852.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.98302468989498	2.83456760104938	3.28595135862888	3.35750444254234	3.15548085982894	3.35718401050648	1.08163736779115	0.11506213000261	0.452801315520848
Merged-chr16-4214197-4	chr16	4213686	4214686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025432)	promoter-TSS (NM_001025432)	-782.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	7.27429821225631	7.11968479524954	7.3116870926102	7.19557962753417	6.988970284216	7.19798740607055	-0.163391361289193	0.498375632432939	0.833865667012175
Merged-chr10-86989996-4	chr10	86989444	86990444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17998.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	6.85882300619974	6.35188701132377	5.89047995203676	6.61211907399105	6.50533028159561	5.81100336022384	-0.120404228946632	0.759497245631772	0.94046232442711
Merged-chr12-99225429-4	chr12	99224911	99225911	+	962.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-62603.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	3.68997181623716	3.50017342596367	3.75544592409206	3.47198651570857	3.53560461576958	3.51325239556902	-0.498097592057538	0.379956954941208	0.762204638031028
Merged-chr17-53689377-4	chr17	53688892	53689892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-77.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	6.89341870419443	6.93938985392639	6.74297361358861	7.42556097436395	7.63182759622623	7.3180773008371	0.906628956712314	0.000237416704320833	0.00575368395765777
Merged-chr11-113430318-4	chr11	113429818	113430818	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	135497.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	3.87246908279381	4.14628510042566	4.14430543656133	3.15290463755825	3.1614873874296	3.28347698560614	-3.5536361536719	5.89743114880055e-07	3.39829259715648e-05
Merged-chr14-26441620-4	chr14	26441135	26442135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	84088.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	7.48588360760356	7.86471146385058	7.12615934025164	7.499757162684	7.83225189335293	7.21051015619464	0.0163478306436627	0.95712437777593	0.989887454023164
Merged-chr17-44105230-4	chr17	44104724	44105724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	584.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	6.56769727836443	6.19978948261728	6.66477576192419	6.98383315118846	6.94430019223358	7.07404336881707	0.807096880484792	0.00317046118787526	0.0439312349641459
Merged-chr5-65867516-4	chr5	65866992	65867992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3923.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	8.16372517758557	8.0512931416591	7.2088333318605	7.37196972857079	8.01290379001659	7.4025338800822	-0.346446218895105	0.303850580722611	0.700300249727315
Merged-chr6-11907740-4	chr6	11907161	11908161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010886)	promoter-TSS (NM_010886)	-168.0	NM_001362123	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	6.79590334341529	6.45223222620618	6.38976099131125	6.61414876074103	6.42771176503819	6.00463280561543	-0.291620387969987	0.353034922376978	0.74042924884689
Merged-chr11-114911389-2	chr11	114910889	114911889	+	904.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21348.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.26040306335769	2.95793117918096	3.51332993431986	3.09344861152495	2.93664282674469	3.38103558098039	-0.46969247269015	0.504711193714574	0.837806481766929
Merged-chr1-154794794-4	chr1	154794261	154795261	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-68841.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	3.29021729628051	3.7288449661937	3.66081305364323	3.73133427675975	3.55827096827664	3.51545477914695	0.111388284441546	0.851974189543557	0.96531854415899
Merged-chr2-70825120-4	chr2	70824637	70825637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172664, intron 1 of 19)	CpG	343.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	8.29834856204567	7.97473375226581	7.94959696671964	8.06307716663465	7.7947380742667	7.83700281509751	-0.261554350937212	0.267127403381857	0.664550966981069
Merged-chr12-55403830-2	chr12	55403330	55404330	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	B4A|SINE|B4	5005.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	3.75052095816591	3.74726073899794	4.03021023675914	4.42413580325282	4.58010864778211	3.99884250045273	1.52183426461234	0.00349140183905141	0.0470846943636612
Merged-chr11-120577561-2	chr11	120577061	120578061	+	884.7666630000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	4059.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	4.7512146243269	4.09543977568502	4.89725458892786	4.1348194227193	4.3391237709653	4.53177453752366	-0.695203783257092	0.175416506794915	0.555284540925307
Merged-chr4-3799217-3	chr4	3798651	3799651	+	857.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36504.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.71287205540263	3.61883185050735	3.84507686468039	3.6386972911894	3.56348387179861	4.17740586986215	0.283287221974273	0.625231938551	0.89246806537449
Merged-chr2-174106773-3	chr2	174106282	174107282	+	859.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3569.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	2.86071646319588	3.0617073560616	3.12160133192546	3.66543166770498	3.59064508909003	3.74752048511713	2.83410571547497	5.26356066478636e-05	0.00165022741445194
Merged-chr5-21202295-4	chr5	21201780	21202780	+	954.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	16013.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.6382014965504	4.29668518351119	4.49515307346158	4.19991943149664	4.1743546124962	4.47991490511076	-0.525449714689442	0.254763415867966	0.651795784753612
Merged-chr9-48161982-4	chr9	48161477	48162477	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	178921.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	3.03883892648823	3.47680460510835	3.31997173597089	2.96375400365233	2.9371583607	3.10765080625661	-1.28905443493598	0.0605437259320699	0.31863934043002
Merged-chr8-123190950-4	chr8	123190466	123191466	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	4731.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	2.48017075364983	2.63475613667022	2.51542440728059	2.57854777766404	2.60583285426672	2.77416410661671	0.599806803551962	0.438616050310301	1
Merged-chr3-88403663-4	chr3	88403141	88404141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	(A)n|Simple_repeat|Simple_repeat	6756.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	6.13651824432011	6.32894009086231	6.57330037210469	6.2646177950828	6.59163020755823	6.4440484890117	0.156635717078721	0.593731350705961	0.878591467713705
Merged-chr15-25550866-4	chr15	25550374	25551374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71676.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	7.1048720454826	6.77979734449999	6.8011377001726	6.49319619048646	6.54287244653891	6.45578371731336	-0.641039984738946	0.0159521718741162	0.138681276604817
Merged-chr8-61606097-2	chr8	61605595	61606595	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-14926.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.75604509919306	5.03852021189158	4.86198425476412	4.90910036397647	4.86985247005606	4.99911596930206	0.0620176382561141	0.872602454184968	0.970261003150518
Merged-chr10-34214756-2	chr10	34214256	34215256	+	701.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7205.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.72861279714216	3.98668351364099	3.95064945605973	3.89138798038986	3.77138550981808	4.1108724577229	0.0944494966073312	0.857115664813337	0.966681760410265
Merged-chr10-88146968-4	chr10	88146465	88147465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027191)	promoter-TSS (NM_027191)	-24.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	4.37486087957841	4.45910762004231	4.27118797049796	4.28002470405375	4.16590871807486	4.24698897457715	-0.39459205381229	0.382424472830005	0.764000781517693
Merged-chr4-140963129-4	chr4	140962614	140963614	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	Lx8|LINE|L1	1843.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	6.55544141229342	6.57943751078351	6.80731521956568	6.8245120372329	7.12453997871078	6.83621894651735	0.466531351712468	0.0783462065009748	0.369601493963778
Merged-chr7-118843215-3	chr7	118842728	118843728	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168220, exon 5 of 5)	3' UTR (NM_001168220, exon 5 of 5)	12385.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.07951620524883	3.11665667416379	3.32844165239921	3.06593780403068	3.02584289913252	3.29191834568682	-0.203564247277396	0.755713160894739	0.939400440743942
Merged-chr8-119778486-4	chr8	119777962	119778962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028883)	promoter-TSS (NM_028883)	-46.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	5.64426613886773	5.67876013318794	5.83832146685868	5.75528098605521	5.53986484307426	5.94526028103941	0.0507074054802594	0.875891510314491	0.971136321106511
Merged-chr10-77972002-4	chr10	77971501	77972501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2129.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.169093028924	7.20269854431382	7.39992377124702	7.28581661486967	7.59259029564847	7.42581348483777	0.280885423943861	0.24547770943213	0.642586288846572
Merged-chr14-31593680-4	chr14	31593167	31594167	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-16284.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.558302261532	4.91960665962334	5.15379316059194	5.57796394156478	5.45530454433006	5.07406052527624	0.294685512795505	0.466591447400329	0.817586753758551
Merged-chr19-56777193-4	chr19	56776677	56777677	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36506.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	5.22142008832732	5.14574614213771	4.88597135211905	4.75016039546965	5.00965644315222	4.66456947677455	-0.584884105972795	0.145634505248423	0.508806562677333
Merged-chr14-31385445-2	chr14	31384941	31385941	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32236.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.99959155963809	7.89456652817031	7.78470510655763	7.92740753240594	8.30274723380558	7.76170517352364	0.182636783562363	0.462037015537816	0.815107818354545
Merged-chr9-63044295-4	chr9	63043809	63044809	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-63430.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.09054540297944	4.10454550374562	4.02615002492449	4.32295330920184	4.44266390608076	4.37662902508286	0.838971652618739	0.0680730771064975	0.341417536171971
Merged-chr2-26916421-4	chr2	26915913	26916913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-8.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	8.35618544369359	8.5260902817512	8.2885408510048	8.15263161755516	8.2919071721476	8.22392296305434	-0.240854158754914	0.252260309184091	0.649735854202467
Merged-chr11-104440287-2	chr11	104439787	104440787	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	2004.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	6.93376059457791	7.10721017932947	6.59734073452345	7.29485434565986	7.16637056287381	6.9489332515438	0.365728053120812	0.182713436012759	0.565548610698318
Merged-chr17-21534659-4	chr17	21534192	21535192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144515)	promoter-TSS (NM_144515)	-847.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	5.14397968665755	4.97860275115349	5.10686868149293	5.08374566785413	5.37603243757768	5.17130415898712	0.306143778073625	0.401712417836663	0.777753227258936
Merged-chr19-12735182-3	chr19	12734689	12735689	+	857.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30443.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	3.54810491262278	3.43207024082879	3.42325199026044	3.77239344212593	3.73135489812241	3.91457361710345	1.15365955959375	0.039636255646612	0.247490136563356
Merged-chr9-90269108-4	chr9	90268628	90269628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1641.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.63282263927187	6.65498867412222	6.74448056942965	7.05696734257597	7.1151737499052	6.96439830680997	0.582956428889827	0.0172895449507679	0.146514762833639
Merged-chr10-57776819-4	chr10	57776332	57777332	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8091.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.93523397101958	6.19247628998699	6.31505310193317	5.74455207362426	5.84342524150978	5.84228856956732	-0.59123279178817	0.0529825009575182	0.294907213838596
Merged-chr1-152622984-4	chr1	152622439	152623439	+	985.1979369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	2278.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.9475034237393	6.90001292332103	6.86983555922913	6.98077976360036	6.96295714877925	6.82367398199572	0.0323043974435624	0.894340611758949	0.975478229649209
Merged-chr2-124670097-1	chr2	124669597	124670597	+	548.0	f0_balb.idr	Intergenic	Intergenic	16516.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.20116562918099	4.13669689770849	4.39552283547859	3.75539545223297	3.978378836899	4.21223566132025	-0.729591742357303	0.149890587024713	0.516464282792344
Merged-chr7-16820546-4	chr7	16820043	16821043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3811.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	3.39831690145696	3.28294178620064	3.5106913349578	3.28472013087952	3.1891774239035	3.63019499507716	-0.0914957282912537	0.883578320010411	0.973398448979561
Merged-chr7-113518628-4	chr7	113518124	113519124	+	855.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	MIR3|SINE|MIR	4790.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	5.45520138529244	5.47975679043598	5.48915088339607	5.38787243101547	5.38727514581572	5.49448480811931	-0.104895225759162	0.748753111725478	0.937087780077821
Merged-chr4-124711088-4	chr4	124710596	124711596	+	950.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3765.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	4.79716153914691	4.86390703106423	5.16830366815694	4.64457035697274	4.94842435446559	5.0742748346885	-0.0988786571942765	0.808201230699347	0.954644541568446
Merged-chr5-30917610-2	chr5	30917173	30918173	+	720.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133918, exon 4 of 8)	exon (NM_133918, exon 4 of 8)	-3886.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	3.17868717325003	3.4579623710307	3.80827882401344	3.05659691443866	3.03839157170473	3.49927213482017	-1.13824705393993	0.102862540522667	0.427671327227806
Merged-chr7-97822084-3	chr7	97821587	97822587	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	-20852.0	NM_001357363	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	3.56760107558749	3.42838196871407	3.50031140239537	3.59381336327134	3.2586310246851	3.28441170539403	-0.419325200206461	0.489619740494175	0.829774723350021
Merged-chr7-128458140-2	chr7	128457640	128458640	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347640, intron 1 of 11)	intron (NM_001347640, intron 1 of 11)	3373.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	3.43513323819327	3.63677688091613	3.58119605956183	3.1663869380524	3.32885736431646	3.70031526451107	-0.527342117792599	0.399676824945281	0.776019350135268
Merged-chr5-36560722-3	chr5	36560219	36561219	+	723.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	21678.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.37395800408754	4.31943037762201	4.45620884966608	5.96615271929977	5.78471957849396	5.69112623026625	3.14144150428164	3.07872274518184e-15	8.74315229286997e-13
Merged-chr12-12246591-1	chr12	12246091	12247091	+	888.0	f1_c57bl6.idr	Intergenic	Intergenic	-15548.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.50168501583503	3.53806341546882	4.05932478793334	3.66890520677371	4.10105262344794	3.9457883656485	0.644742954200564	0.273666430905221	0.671005315380766
Merged-chr10-80153808-2	chr10	80153308	80154308	+	676.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305799, intron 4 of 7)	intron (NM_001305799, intron 4 of 7)	4126.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	3.89891923658956	3.99262889753395	4.27322616775549	3.94893357010602	3.79023673962549	4.37912394175559	-0.0134843491322192	0.979968017450779	0.995416130723271
Merged-chr16-57550932-2	chr16	57550495	57551495	+	912.7666630000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1753.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.65378209534617	7.517572293012	7.13907175433375	7.58677826499154	7.6719036218696	7.43589469365522	0.158128458654687	0.534524562659014	0.853068627162717
Merged-chr7-19630158-2	chr7	19629658	19630658	+	952.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-720.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	6.50310668666203	6.44413465607706	6.09412376648312	6.3827645460541	6.1946195713095	6.1091990265558	-0.220822426350108	0.453515242934175	0.80983494973791
Merged-chr12-3712736-3	chr12	3712255	3713255	+	834.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-94225.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.87441513968349	3.13518095578354	2.79430101368611	3.1197821913965	3.0626695508055	3.05929646455426	0.596931610148586	0.397761554981451	0.774593722474986
Merged-chr13-52597385-2	chr13	52596885	52597885	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	503.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.07358454980624	7.17589811596621	6.91767632704922	6.98603641511898	6.70546357103087	6.71482756059378	-0.393632412220595	0.12634651017779	0.475273074994284
Merged-chr4-108835014-2	chr4	108834514	108835514	+	872.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	336.0	NM_025334	66073.0	Mm.159965	NM_025334	ENSMUSG00000028567	Txndc12	0610040B21Rik|ERp16|ERp19	thioredoxin domain containing 12 (endoplasmic reticulum)	protein-coding	6.08748098451423	6.18298755759624	6.40775232666371	5.86120200000332	5.99975555676002	5.73889502304916	-0.597571819011855	0.0499418970662992	0.284491365173726
Merged-chr6-65528083-4	chr6	65527583	65528583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-62315.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	4.7001796537781	4.55355470985851	4.7709815211456	4.51668205432347	4.76456528650769	4.51687832387826	-0.138383297614015	0.742455637553966	0.935226375548244
Merged-chr12-86894619-4	chr12	86894118	86895118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9804.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.00775628621757	7.03545958053609	6.83619606305467	7.1769986984802	7.31492333979623	6.99724582817636	0.316713522045318	0.204630331272161	0.59532466013405
Merged-chr17-73029803-2	chr17	73029302	73030302	+	919.0	f0_balb.idr|f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-78183.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.83638021621279	3.43623011917457	3.45544424742936	3.3783212537764	3.23967439454879	3.35467223222187	-1.02722430315651	0.0951630284721248	0.411148363215922
Merged-chr4-132302402-1	chr4	132301902	132302902	+	541.0	f1_c57bl6.idr	exon (NM_001081651, exon 2 of 2)	exon (NM_001081651, exon 2 of 2)	954.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	3.51985858088635	3.70764766126575	3.98264965777082	3.59519565860424	3.36310469997729	3.67231833149461	-0.691213753505735	0.239483577294421	0.636359120505658
Merged-chr9-78589760-2	chr9	78589301	78590301	+	871.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	3.05147212770507	2.87959850475288	3.11562278497376	2.59626147783396	2.87665738212541	3.18654535056502	-0.518306964131375	0.506760627407886	0.838564323822494
Merged-chr2-35441693-3	chr2	35441192	35442192	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19757.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.92064086776675	6.09301093573844	6.31084735674607	5.72157089007418	5.66386567822712	6.10001320260074	-0.489872763176602	0.130208159163597	0.482470631799278
Merged-chr11-107325203-2	chr11	107324643	107325643	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B1_Mus1|SINE|Alu	-135762.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	4.96905238119183	4.63227156491008	4.47290525181255	4.72156934695237	4.83848540293494	4.87032293011891	0.20931229577227	0.620871567257998	0.890377466623065
Merged-chr9-45906461-4	chr9	45905974	45906974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281934)	promoter-TSS (NM_001281934)	-95.0	NM_001281934	18554.0	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	7.96847519286172	8.17269853396977	8.14213649509268	8.17717444656566	8.20742950185731	8.26229400007948	0.166806389703113	0.426667437287574	0.793840707522572
Merged-chr15-8994498-4	chr15	8993991	8994991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	(A)n|Simple_repeat|Simple_repeat	26542.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	6.08832218787464	6.4002623403942	6.41433083531621	6.10052909946628	6.25846249254998	6.47357676276681	-0.0427817724611448	0.88508365618789	0.973538624783452
Merged-chr3-118070297-4	chr3	118069786	118070786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201350.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	4.30468661498421	4.34091411674607	4.13803186451441	4.50754246936655	4.48438676732708	4.56638635804453	0.632438690498493	0.153375341310959	0.52228587680795
Merged-chr9-16114497-4	chr9	16114007	16115007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-239951.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	5.94900978010827	6.19616571306948	5.84691835685239	6.02132644081354	6.28203250409011	6.07643439885303	0.212077668244829	0.486794883005331	0.827985697457807
Merged-chr16-21384023-2	chr16	21383523	21384523	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39095.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	4.00672190335408	3.96038776780494	4.16809516284559	4.39978902072873	4.4375277326364	4.32726049668706	0.975028330249217	0.0352764059454465	0.23054344846911
Merged-chr14-99970389-4	chr14	99969882	99970882	+	931.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	179414.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	2.88926655593074	3.22118504397364	2.99214279764306	2.80973395438835	2.79285003066982	2.94466183304389	-0.959997414157011	0.177751536474179	0.55882263155115
Merged-chr5-147437567-3	chr5	147437101	147438101	+	893.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	7445.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.83329645139392	5.91075579573914	5.64403026365941	4.89036215253676	4.72200985773687	5.01590387656231	-1.89448421579323	1.01435539600363e-07	7.23129232366322e-06
Merged-chr3-79171741-3	chr3	79171256	79172256	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-25881.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.88863880216207	4.40640502556307	4.87283303923871	5.37875682210243	5.18249053351511	5.21522619433586	1.13199718097896	0.00526744721647402	0.063471308763923
Merged-chr15-65744685-3	chr15	65744185	65745185	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42335.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	4.15531148583468	4.74856786506815	4.44358934962279	3.96082367222155	3.82330657050435	3.95366394565215	-1.59928499167834	0.00181431571733934	0.0286625369676042
Merged-chr10-37228089-4	chr10	37227609	37228609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.51799543951038	6.28411808213587	6.26117204836641	6.44304616825348	6.48011635351484	5.97760669067366	-0.0498241551722272	0.869573010495459	0.969821240077951
Merged-chr19-41086915-4	chr19	41086401	41087401	+	981.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-9788.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	2.4574118322724	2.25293521022543	2.46728348191274	2.34554204663704	2.04680913936561	2.34953164751974	-0.96164090801876	0.294626825018573	1
Merged-chr8-105339155-4	chr8	105338656	105339656	+	931.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	8814.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.27034761087922	6.27653707339413	6.36247912207497	6.65509917117108	6.90362288663395	6.09805160428901	0.49938556616148	0.116694559556956	0.456173597444018
Merged-chr2-4491134-2	chr2	4490634	4491634	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-68620.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.17416815456164	2.1530452160725	2.32414883640699	2.57620330681739	2.45803853842747	2.59342659402543	2.33915920600759	0.00989995541897396	1
Merged-chr11-82834162-3	chr11	82833700	82834700	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164570, exon 2 of 8)	5' UTR (NM_001164570, exon 2 of 8)	-5157.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	4.14809613617373	4.128910962606	4.01291495175699	4.26103517591454	4.0662517987788	4.17876082429992	0.184918040307407	0.697386000033476	0.919941886090007
Merged-chr7-49778754-3	chr7	49778253	49779253	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133740, intron 2 of 15)	CpG-13170	395.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	6.0999248813506	6.35772978165944	6.17202442456313	6.11144416972305	5.63915851125138	6.08343979674579	-0.454690747159413	0.152258966876077	0.520263755512759
Merged-chr14-51278653-4	chr14	51278154	51279154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22542.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.41804226380692	4.2551705659075	4.32473154086561	3.92541110611564	3.69468317466608	4.12552860860208	-1.22838189294412	0.0149089018592939	0.132084742962961
Merged-chr6-29278722-4	chr6	29278208	29279208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	4.01722852682932	4.12901062788056	4.15878351228938	4.00138201502271	3.93454229584545	4.18148743751596	-0.192007175822517	0.692915799666804	0.91880752705484
Merged-chr19-18713690-2	chr19	18713190	18714190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177640, intron 1 of 1)	CpG	454.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	5.81495914494699	5.67149973606467	5.706095187115	5.76367837283969	5.4520488834047	5.89097497929721	-0.0567997032604637	0.86286095951264	0.968135581433761
Merged-chr6-55182536-4	chr6	55182042	55183042	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7552.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	4.059051205836	4.02268911159592	3.88508156205564	3.97245279813013	3.98277814322023	4.23794111529248	0.194474992549648	0.695814584835696	0.919291538728398
Merged-chr17-34124808-4	chr17	34124298	34125298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-720.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	5.71638214588909	5.62112157632471	5.92360007808057	6.09048692770398	6.17036773635582	6.2591924092691	0.74064456777465	0.01344045815434	0.123411348720628
Merged-chr16-23612202-4	chr16	23611720	23612720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	2301.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	5.71114256962013	6.00060209508874	6.09381382846372	5.98297001776605	6.46105140084899	5.99724843548967	0.411656694297057	0.209106941285991	0.600395742030301
Merged-chr13-24444190-2	chr13	24443690	24444690	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	29068.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.38034629487225	5.12669474276116	5.40692871362044	5.57752564425745	5.6249607850027	5.63841505274883	0.595664526862337	0.0754905301251271	0.361749368270651
Merged-chr10-77509812-4	chr10	77509306	77510306	+	731.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	6007.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	2.0912130841371	2.05844000490878	2.26509210172134	2.04445944875676	1.84988926756432	2.21205476260357	-0.749281304333044	0.441099954390305	1
Merged-chr11-95383873-1	chr11	95383373	95384373	+	608.0	f1_balb.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-983.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	2.48324911055061	2.57752015487454	2.84732679805434	2.59528959639315	2.30839154589814	2.5593601168784	-0.874068856708869	0.292722975328784	1
Merged-chr11-74926821-2	chr11	74926321	74927321	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 1 of 18)	intron (NM_001002764, intron 1 of 18)	949.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	5.98456458532217	5.96810958836953	5.43251077984316	6.14091786367589	5.81817088561346	5.56222192040611	0.0655524627491349	0.855901126123702	0.966291297241215
Merged-chr7-127851077-4	chr7	127850583	127851583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	9275.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	8.8195132650981	8.74902246593213	8.41242411806959	8.66011964444626	8.90603945758501	8.31931774734009	-0.0258312085023984	0.918325193448086	0.981755409456577
Merged-chr4-58535976-1	chr4	58535476	58536476	+	655.5	f0_c57.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	17317.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.65281465934327	2.73415490052432	3.10549750397015	2.84830412234259	2.9897137817464	3.28265710191185	0.981417757757656	0.194279644423648	0.581476229387536
Merged-chr3-90627611-2	chr3	90627111	90628111	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	14717.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	3.169811767027	3.1664126007221	3.3880719946297	4.05547688227383	3.83688210803666	3.98716411892477	2.7827124754539	9.4558613578901e-06	0.000381572896152919
Merged-chr4-119293103-4	chr4	119292571	119293571	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1442.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	7.80679179474267	8.16021174100723	7.94036597530689	7.85658499651918	8.07413517936788	7.75773124949217	-0.100337736113718	0.67198635140366	0.910719060610024
Merged-chr3-51341291-4	chr3	51340796	51341796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-652.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.86533417754898	7.55453289412808	7.592504347071	7.70075350612208	7.6039629396381	7.6207016774312	-0.0569772019099124	0.80514026189124	0.953787743121181
Merged-chr15-25634319-4	chr15	25633819	25634819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	11769.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.84322328386303	4.69242225188898	4.65534231600532	5.4257195832991	4.90482798013162	4.88730314938637	0.794470888249323	0.056304878400574	0.305902378258871
Merged-chr4-119178490-4	chr4	119177968	119178968	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013848, exon 13 of 13)	exon (NM_013848, exon 13 of 13)	-4273.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	3.81111730106902	3.52524049426256	3.85265422979846	4.9922055833845	5.12153944232823	4.77856879350866	3.62678563584124	2.82684055097428e-11	4.20779514428386e-09
Merged-chr5-114654169-4	chr5	114653658	114654658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	MIR3|SINE|MIR	4263.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	6.78078347139105	6.80644978566083	7.20252071711682	6.52806550877608	6.3540909373353	6.51439335414672	-0.744630651048053	0.00720143555079437	0.079789220946804
Merged-chr7-102222437-4	chr7	102221938	102222938	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	-590.0	NR_111938	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	4.73747094133696	4.80473594840373	4.98268146691989	5.04636038891205	4.99605397264928	5.35748368104485	0.636785589985799	0.100361421935246	0.422486754851157
Merged-chr2-29051739-2	chr2	29051239	29052239	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	3327.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	3.97641555521677	4.10891058880788	4.26814939091247	4.09784190413432	4.29500562838757	4.2476977478923	0.286656918026222	0.547644511927776	0.859389836719927
Merged-chr3-104030945-3	chr3	104030460	104031460	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 15 of 21)	intron (NM_133853, intron 15 of 21)	-62644.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	2.46028127138266	2.42355406406654	2.54897979173801	2.48584263228023	2.38065640908064	2.62236974930732	0.113727897330052	0.886216708525704	1
Merged-chr15-38074328-4	chr15	38073826	38074826	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4528.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	4.2314291158105	4.05400648983076	3.75729173403762	4.06425886665012	3.84395489243318	3.59341381284608	-0.54973435150311	0.330424674048973	0.721891936099011
Merged-chr10-86885910-4	chr10	86885414	86886414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	106909.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	8.39862718723259	8.52990239679135	8.25345768358467	8.43810150352534	8.94116572162348	8.19480583996073	0.237488055138559	0.373013349074301	0.75692463723386
Merged-chr10-128059816-4	chr10	128059306	128060306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	CpG	824.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	8.70867170376511	9.00445449090608	8.17857527848498	8.43826516925249	8.65549972042742	8.13317292626468	-0.345700556258238	0.226184804244904	0.621140322788657
Merged-chr8-41047077-4	chr8	41046565	41047565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5134.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.40095792708861	5.39594164632451	5.36923072433549	5.67245434695421	5.60872770901344	4.87922661899698	0.11236135003886	0.776789835545568	0.944892922631445
Merged-chr9-65293230-4	chr9	65292731	65293731	+	925.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1029.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	6.0957912493451	5.62207799339945	5.56771843358521	5.88169218450916	5.96601288412282	5.50833864003006	0.0313650908436816	0.929710046286417	0.984210069653274
Merged-chr1-187216873-4	chr1	187216378	187217378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357645, intron 1 of 9)	intron (NM_001357645, intron 1 of 9)	1135.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	4.39335214555708	4.59815872127541	4.5284838268779	4.72691070917145	4.51333761209543	4.99804592806877	0.571872750325994	0.189371878257678	0.575199467401664
Merged-chr7-98720440-4	chr7	98719946	98720946	+	890.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17199.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	6.14398975226069	6.11907016609728	5.87929121042041	5.73179381573293	5.81546450480638	5.52385521597356	-0.623991644928913	0.0464753811155826	0.272774459467123
Merged-chr13-113875925-4	chr13	113875427	113876427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	81419.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	3.10286057432052	2.99289158649947	2.96731327016071	3.03952976571499	2.98526360623612	3.27024261033685	0.327378875772946	0.625062775111962	0.892373820694132
Merged-chr18-36516785-2	chr18	36516245	36517245	+	985.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-940.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	3.12152573094543	2.90414656741629	2.80610024564242	2.85782345321734	2.89756611810357	3.06312466676016	-0.0772785275226068	0.913111981873916	0.980541282138254
Merged-chr9-94654124-1	chr9	94653624	94654624	+	543.0	f1_balb.idr	Intergenic	Intergenic	-15768.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	3.10265784961842	3.49248844531195	3.30267585004425	3.24235906686725	3.0931883036825	3.73060663560958	0.263848025494036	0.699592210166313	0.920619136555148
Merged-chr11-54089059-4	chr11	54088583	54089583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11841.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	6.99590412457759	7.06956981189567	6.52834518859694	6.95276067079904	7.16848249485098	6.56935395176976	0.0545873376229491	0.857686793471022	0.966785186918462
Merged-chr7-126889209-2	chr7	126888709	126889709	+	870.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_026827, intron 4 of 5)	intron (NM_026827, intron 4 of 5)	-4242.0	NM_001163774	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	4.03481757664362	3.83860117628269	4.39843583945901	3.84524201625942	4.07435590665382	4.17637212464746	-0.185406167587951	0.72515288511301	0.929553899800111
Merged-chr12-40277832-4	chr12	40277322	40278322	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	54458.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	4.26335955432613	4.38441487036297	4.26095609092306	4.38667704559849	4.17493608211896	4.23670007327054	-0.107436216404955	0.813599024796476	0.955940138311315
Merged-chr19-30033331-4	chr19	30032823	30033823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	2810.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	6.01675583993751	5.97792488262717	5.99270447272277	5.85723563981601	6.02263955198288	5.91235540514757	-0.102141576056877	0.727045932674922	0.930092984118427
Merged-chr18-53253156-2	chr18	53252656	53253656	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	7494.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.51281682208864	5.70139964839004	5.74550278993405	5.65254772744167	5.78909340325784	5.75633709657766	0.151958489796198	0.629921256667661	0.894460450260291
Merged-chr19-7241203-4	chr19	7240693	7241693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027643)	promoter-TSS (NM_027643)	29.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	6.97430928697204	6.94306065184406	6.87730107424998	7.12057190326898	6.7766805642314	6.6849105855109	-0.0857920458048056	0.744986650098991	0.936032341688524
Merged-chr2-168557050-4	chr2	168556566	168557566	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	33299.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.23582771046355	5.04654095245746	5.0225146710349	5.29117568449844	4.6411566102303	4.73829449639543	-0.38796991885818	0.359696884011175	0.746001337716324
Merged-chr4-24617511-4	chr4	24617011	24618011	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033531, exon 10 of 10)	exon (NM_001033531, exon 10 of 10)	121060.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	4.12276593227904	4.31761721776396	4.173868712009	4.08282002488808	3.80097304715837	4.0538000961528	-0.67413375435467	0.17243244934712	0.55098921832854
Merged-chr6-113309292-2	chr6	113308792	113309792	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	2155.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	4.07570835923492	3.85935361847265	4.14684207689641	3.91717344554697	4.01632396135036	4.29947588257578	0.152411103680572	0.763114585632456	0.941704313360999
Merged-chr11-116808407-3	chr11	116807881	116808881	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 4 of 4)	intron (NM_001347633, intron 4 of 4)	19665.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	3.60152503770904	3.77730343884848	3.79770836869446	3.28442268841756	2.99023482422367	3.21812313127614	-2.32819696851282	0.000434053400667765	0.00940049853273383
Merged-chr8-72135211-4	chr8	72134757	72135757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001491)	promoter-TSS (NM_001001491)	-35.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	6.20409334983771	6.36832485384947	6.01071116276222	5.42699503969951	4.95624654867795	5.33648305108141	-1.78140688888577	2.21914661274979e-07	1.43140117328437e-05
Merged-chr2-104731506-2	chr2	104730988	104731988	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	11313.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	5.10250082959459	5.37581532389679	5.51807200573163	5.30825976941906	5.09852585884046	5.08902681157949	-0.334928763935539	0.361599095793695	0.747458707295016
Merged-chr8-72351636-2	chr8	72351136	72352136	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	32574.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.10667015886628	3.24928577844778	3.30580531926248	3.18153332734511	2.91242390707945	3.376430463619	-0.243795926231281	0.716502999036534	0.926635190845863
Merged-chr6-135951837-1	chr6	135951337	135952337	+	841.6666869999999	f0_c57.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	221674.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	2.20518066985984	2.39446826811416	2.35289848347765	2.46955938392083	2.43097374283699	2.6177850330786	1.17939862777027	0.160759612993505	1
Merged-chr15-57705165-5	chr15	57704572	57705572	+	684.7363280000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	10405.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	5.85245400977641	5.9474104907744	5.95468075834577	6.29240481408086	5.94629519939117	5.58648887892122	0.114736147855578	0.731758574409795	0.931535693390145
Merged-chr2-167345200-4	chr2	167344680	167345680	+	780.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	3998.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.28120407048495	4.28201802534845	4.65286046231749	4.5611525984446	4.12086956165584	4.44403304859297	-0.0641188352563366	0.892929346780178	0.975146620821922
Merged-chr8-23256712-2	chr8	23256236	23257236	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_001042484, exon 2 of 6)	exon (NM_001042484, exon 2 of 6)	344.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	7.14277257586233	7.16369743709138	7.29713490142602	7.34046597376264	7.32920554587636	7.3097313527499	0.192007673373027	0.402609689709794	0.778136835951234
Merged-chr4-154943354-2	chr4	154942854	154943854	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15277.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.20958343533323	7.20826892701358	7.15852611441567	6.34481524691848	6.44895069369809	6.29399902469739	-1.28349658257446	3.73320826578356e-07	2.27903736888715e-05
Merged-chr7-123333267-2	chr7	123332767	123333767	+	863.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	36648.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.5076306067479	4.23620818950226	4.64364080364467	4.48677521242853	4.43951752140426	4.63263467434078	0.129743537709428	0.770067903032668	0.943310056383255
Merged-chr2-11554532-1	chr2	11554032	11555032	+	543.0	f0_balb.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	-603.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.61732150446481	6.87637323573266	6.51460308293813	6.57572389685899	6.61917812122685	6.50114971661789	-0.185757973150679	0.490895985630419	0.830208116813721
Merged-chr3-116127489-2	chr3	116126989	116127989	+	936.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	2199.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.23657692745163	6.40869238306193	6.34729807369287	6.79368412106958	7.01786647526475	6.38765701590863	0.702975519232569	0.017260902532985	0.146436090738643
Merged-chr7-98321973-2	chr7	98321473	98322473	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-765.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.97419224730958	7.14018145422857	7.06234501147657	6.43336076602276	6.72177977733709	6.6593251895619	-0.694034965884596	0.00708551938533434	0.0788936032403185
Merged-chr10-82858651-4	chr10	82858168	82859168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-538.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	8.07714777374366	8.16331774744515	7.75498980704137	7.69589123018156	8.1045129597542	7.31984229891691	-0.363892746033788	0.205194118437105	0.595819102698027
Merged-chr13-37451679-4	chr13	37451188	37452188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106343.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.43054124915216	5.06765958106287	5.16006666086748	5.28131960666311	4.8830719656567	4.897816252913	-0.407832676674756	0.296856994144411	0.693494209915441
Merged-chr6-106791620-4	chr6	106791106	106792106	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	8481.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	4.78107316861979	4.75600804017118	4.44981804638786	5.13879841843643	5.49886470769063	5.13352309190923	1.27971606917128	0.0017327984806702	0.0276795346476495
Merged-chr9-107746710-2	chr9	107746202	107747202	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	24300.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	5.01714819727142	4.63681907321778	5.07806084707241	4.64459344171113	4.66809184240775	5.14124983993368	-0.205027612873446	0.634743689470509	0.896354115104213
Merged-chr7-98948151-2	chr7	98947651	98948651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	RMER19A|LTR|ERVK	109306.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.39554082492569	2.32914714086036	2.3874642478695	2.45536677843362	2.48760654566736	2.6482127531999	1.00444344802795	0.214404612829109	1
Merged-chr4-118620835-4	chr4	118620299	118621299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026789)	promoter-TSS (NM_026789)	0.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	4.92506268753513	5.07864085420935	5.22025782244492	5.2501933674998	4.79679584005322	5.08971446921071	-0.0449678717243813	0.908443915973445	0.979259582109985
Merged-chr12-86947301-4	chr12	86946800	86947800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289432)	promoter-TSS (NM_001289432)	-43.0	NM_173735	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	7.93251865549416	8.11788863660875	7.78491230267493	7.74390972404345	7.73192255014209	7.57299593048935	-0.385344352565935	0.0914507703254668	0.402551748253793
Merged-chr16-38433738-2	chr16	38433238	38434238	+	644.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134102)	promoter-TSS (NM_134102)	-593.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	2.72232100038393	2.90471205446132	3.07477689807147	2.87437933222148	3.00844964497586	2.85142519338844	0.0641699210767221	0.928636197760319	0.983838264232875
Merged-chr7-31157183-4	chr7	31156665	31157665	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5193.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	5.12870638070283	4.9089363958996	4.72672751861044	5.12867990679534	4.86424447940355	4.91352017667162	0.0681979053194726	0.863467470924638	0.968254670575276
Merged-chr6-138140162-4	chr6	138139664	138140664	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-363.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	4.94604496572619	5.5995659379129	5.03816875330589	4.72373465105427	4.48603300710859	4.63458600616441	-1.374229032501	0.0014410612022136	0.0239911605669847
Merged-chr19-58980009-4	chr19	58979506	58980506	+	921.271423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-36334.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	5.73651986927872	5.90472577642722	5.7016455135956	5.74333460924328	5.71627567932455	5.44237596845134	-0.251577339910996	0.434398284934571	0.798410009305253
Merged-chr11-94589574-4	chr11	94589064	94590064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	12222.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	6.79305374298303	6.51423704083444	6.28422441786154	7.00459014101423	7.06595595980518	6.73776287237804	0.611608528799415	0.0320481919373541	0.217349902577501
Merged-chr14-118941265-4	chr14	118940686	118941686	+	861.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	3254.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	4.52577588240191	4.60816386290907	4.56826440807996	4.60793793493142	4.65794151628067	4.37100860280994	-0.0156825097726368	0.970560798317528	0.993509619201398
Merged-chr7-128221154-4	chr7	128220666	128221666	+	962.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14800.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	6.87787501467331	6.28266556682401	6.43497745038302	6.35337270675672	6.44662568291928	6.14488941675963	-0.379613070338195	0.222837102354753	0.617776133760918
Merged-chr15-97727366-3	chr15	97726880	97727880	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168693, intron 1 of 9)	intron (NM_001168693, intron 1 of 9)	4025.0	NM_001168693	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	5.03014496360569	5.47995261507741	4.58477336415336	3.84739632871671	3.87029090328622	3.87333936735048	-3.32083451298197	2.14599685259128e-09	2.23205132638019e-07
Merged-chr11-77515822-3	chr11	77515301	77516301	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026185, exon 1 of 2)	exon (NM_026185, exon 1 of 2)	684.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	4.780141532689	4.51389247488633	4.81907448298985	4.60683873510658	4.29566921162917	4.5794443359066	-0.517258022988673	0.234903427223539	0.631024470284135
Merged-chr1-127219357-4	chr1	127218844	127219844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	MIRc|SINE|MIR	14358.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.68784810133546	5.98816027920818	5.3813461234241	5.99212544850427	6.46803259825542	6.03663052319632	0.815323375573034	0.0213980393266629	0.168853880032033
Merged-chr5-72553223-2	chr5	72552723	72553723	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6422.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	5.6215962856573	5.4789718036144	6.01068778526794	6.23582416283062	6.23674531815191	6.1358976166717	0.874095717357124	0.00588540541296033	0.0688405120725074
Merged-chr15-62000562-2	chr15	62000062	62001062	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15221.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	5.54737521084847	5.6570171481923	5.55134007418545	5.37423989054308	5.33169590444257	5.31345244653263	-0.477274089872332	0.145582855717144	0.508750422332281
Merged-chr3-96580330-4	chr3	96579840	96580840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 5 of 7)	intron (NM_027241, intron 5 of 7)	-13539.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.14267837544703	5.56188288580962	5.86850206202862	5.94296525190613	5.78201816753635	5.77884412368432	-0.0787166687180759	0.814331143842007	0.956208769394114
Merged-chr5-144965212-4	chr5	144964730	144965730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	CpG	600.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	4.99582908514938	4.79407677050253	5.34966991854019	5.29407948332203	4.76786310277586	5.00296909103782	-0.0407935798658676	0.922617503783667	0.982621045978137
Merged-chr9-85332845-1	chr9	85332345	85333345	+	573.0	f1_balb.idr	Intergenic	Intergenic	-5695.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.22315604379118	3.00215849627296	3.15605497713393	3.04923555856079	2.88947100772406	3.11279839803603	-0.518010130077292	0.439805265201533	0.8014040930906
Merged-chr5-33223018-2	chr5	33222518	33223518	+	840.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-4780.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	3.36332415824245	3.37558901592271	3.49375126816086	3.17485351808845	2.95723344378533	3.40684993018407	-0.93113379508774	0.155075594334746	0.524555044199399
Merged-chr2-30093159-2	chr2	30092659	30093659	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037762, intron 1 of 4)	intron (NM_001037762, intron 1 of 4)	476.0	NM_025428	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	3.94815515515645	4.14683678198253	4.09167476210359	3.9090128578005	3.93433895149985	4.20410651091929	-0.14840201515369	0.765593473307788	0.942164370204313
Merged-chr6-38949217-4	chr6	38948724	38949724	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	30238.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.20449499466787	6.93843210265655	7.12581585001714	6.97172658312285	7.39979255171299	6.99983584501316	0.084969205104495	0.75037469467302	0.937550343416037
Merged-chr1-185196512-4	chr1	185196036	185197036	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7632.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	3.85765736509779	4.02094787341646	3.58220080109475	3.73999662478753	3.45265487965765	3.47817466267382	-0.93446398335114	0.109261896256511	0.441676246779623
Merged-chr2-71661620-2	chr2	71661142	71662142	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	RMER1C|Other|Other	-57775.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	5.40828180882761	5.04516558899023	5.36129883651086	5.69147142398278	5.78362597722309	5.65512025196827	0.836883540525307	0.0140005687948852	0.126750008517551
Merged-chr19-38224167-4	chr19	38223695	38224695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081075)	promoter-TSS (NM_001081075)	-63.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	4.59924098422643	4.87879200531601	4.74058944549678	5.08396604074353	5.00467625788677	4.68403444176476	0.446764104000192	0.273660366348403	0.671005315380766
Merged-chr1-184731827-3	chr1	184731285	184732285	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 1 of 4)	exon (NM_008250, exon 1 of 4)	708.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	7.74283418583434	8.18831826910169	8.08749412638927	8.02800969274166	8.19530038373199	8.27255329763867	0.209196040993922	0.378897557043634	0.761423546186667
Merged-chr1-156437520-4	chr1	156437029	156438029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 11 of 15)	intron (NM_009230, intron 11 of 15)	-16614.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	6.22039180605361	5.95291604997911	6.09801325293238	6.25937302541333	5.89864251237079	6.15853770599843	0.0222474595203417	0.941534264497521	0.987024728112131
Merged-chr15-63612287-4	chr15	63611794	63612794	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132686.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.31260662847693	6.52515626806642	6.36166322299351	6.87473349478928	7.05989215982523	6.55499142141122	0.715835201216207	0.0111999491926119	0.108907955173408
Merged-chr10-86859884-1	chr10	86859384	86860384	+	588.0	f1_balb.idr	intron (NM_138673, intron 56 of 68)	intron (NM_138673, intron 56 of 68)	80879.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	2.5504617403538	2.65040051751954	2.84575624958566	2.83361543090019	2.47837359510864	2.79976129185952	0.141502666583502	0.856705080443809	0.966572424861945
Merged-chr14-56776982-2	chr14	56776482	56777482	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025682, intron 1 of 8)	intron (NM_025682, intron 1 of 8)	1336.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	3.2992550107907	3.51994419728286	3.47423561861589	3.38627342433731	3.37460056013146	3.37982701957769	-0.207016503369177	0.727097122136194	0.930106435835116
Merged-chr2-5772660-4	chr2	5772161	5773161	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57899.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.19635502123165	3.89150291293719	4.24177063474335	4.4699022068705	4.5172138110959	4.64060686350011	1.14120798671354	0.0144084544375325	0.129177747746816
Merged-chr6-91684706-2	chr6	91684206	91685206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	639.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	8.03292071099746	7.91831946442823	8.05071720931806	7.95006223899721	7.88713675866305	7.82367266007858	-0.15752958996702	0.456929846785582	0.811981434549263
Merged-chr11-117948089-2	chr11	117947589	117948589	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	21277.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	3.26578956650426	3.00446984124886	3.75260039508505	3.27167296852223	3.11283155350978	3.82061552665857	0.214014555860876	0.769440528796972	0.943125565788486
Merged-chr8-82351508-4	chr8	82351012	82352012	+	881.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	B3A|SINE|B2	51074.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.99860266300498	3.87810326442189	3.96928432313873	3.83817420066589	3.82982452442699	4.08353375546248	-0.105702629648954	0.835039592876881	0.961451138529569
Merged-chr9-35305449-4	chr9	35304951	35305951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	24346.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	10.0712853100606	11.7224639295297	9.84582781219968	10.6261179357668	10.6241685078844	10.2590619212302	-0.460824821886418	0.554288341426154	0.86274012445776
Merged-chr18-36558230-4	chr18	36557845	36558845	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2258.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	5.10367816252961	5.30528139671416	4.96364343780254	6.08638117341382	6.22681317930702	5.44041632685615	1.55389928220817	5.72193189162167e-05	0.00176402559776975
Merged-chr12-100352291-4	chr12	100351773	100352773	+	744.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 16 of 19)	intron (NM_001033213, intron 16 of 19)	75664.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.11664898376697	2.97891366173483	3.07311113917186	3.06674941641448	2.92087013551494	3.08671833811256	-0.156887670482315	0.813306347163312	0.955940138311315
Merged-chr5-97009986-2	chr5	97009486	97010486	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	ORR1E|LTR|ERVL-MaLR	12297.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.59039955113637	4.58950317936048	4.86349135758978	4.75285118115069	4.56920932396242	4.66754664653471	-0.0363677661183541	0.929972045258926	0.98436656024861
Merged-chr2-26444573-3	chr2	26444079	26445079	+	859.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153125, intron 1 of 29)	intron (NM_153125, intron 1 of 29)	637.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	8.21216301167278	8.34552022992378	7.88224385939118	7.9660527997545	8.12840237992796	7.7282581047032	-0.295806944823154	0.23263827792028	0.628944749946774
Merged-chr1-87549609-4	chr1	87549172	87550172	+	891.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111314, intron 1 of 14)	intron (NM_001111314, intron 1 of 14)	24198.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	3.79350175089039	4.03116641920532	3.75301352659445	3.89931539503442	4.26092823144435	3.76951836971171	0.40697693076709	0.458158176934099	0.812896892900026
Merged-chr7-16223086-3	chr7	16222520	16223520	+	792.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027883)	promoter-TSS (NM_027883)	-988.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	3.73214337439915	3.73721776860933	3.86277621713366	3.66090597544985	3.79273403793024	3.93078089574484	0.067723887998286	0.898106291372628	0.976261391798139
Merged-chr9-113783919-4	chr9	113783426	113784426	+	820.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	intron (NM_001114347, intron 6 of 39)	-9404.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.48397212329263	4.39246594675923	4.4372236341256	4.0775100822168	4.36222139919091	4.37624049178106	-0.414327222693094	0.361469843983143	0.747407752550801
Merged-chr13-58479390-3	chr13	58478911	58479911	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76068.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.69289886483353	5.90721387251612	5.58615832529158	5.47203479200272	5.56909558443043	5.27281904439579	-0.53797224640966	0.110537189900889	0.444247148071402
Merged-chr15-53474332-4	chr15	53473823	53474823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128140.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.65851707347781	4.73660021102383	4.91823915820223	4.55739885891736	4.71622720837882	4.98212305487149	-0.0304638704701802	0.941341270800671	0.986947626233663
Merged-chr5-64797055-2	chr5	64796555	64797555	+	598.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6468.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.95962624176951	3.83908616297383	3.90229881875447	3.82038058516387	3.81306387552898	4.11092949317434	0.0372007809338549	0.942393483842796	0.987202156853573
Merged-chr6-72390202-4	chr6	72389676	72390676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	491.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	8.81175231906672	9.0459954756482	8.81991768898768	8.8843547192261	9.01563017534153	8.80831568036237	0.0123486525773617	0.952319245582571	0.989068549972429
Merged-chr6-137408942-2	chr6	137408442	137409442	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	PB1D10|SINE|Alu	-1779.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	2.68889555530984	2.9261248245242	2.73972208437486	2.88423187539938	2.88587088111602	3.05522446513074	0.730082624443233	0.312359876653938	0.707123550253801
Merged-chr12-64966324-4	chr12	64965849	64966849	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	607.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	7.9049199580303	8.2895697502248	7.70578539073976	7.59446574002076	7.82670238213582	7.85693036748674	-0.333514426966902	0.194309477244349	0.581523683866768
Merged-chr16-22010395-4	chr16	22009893	22010893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	intron (NM_001357424, intron 1 of 15)	909.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	7.74449301184778	7.954779955076	7.33745281802305	7.40544914776105	7.91816055487652	7.29896948518079	-0.18836383722462	0.523722278489039	0.848396444047814
Merged-chr7-141577865-2	chr7	141577365	141578365	+	811.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	ORR1B1-int|LTR|ERVL-MaLR	15685.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	4.7548312722359	4.98639789206399	4.75886173019808	4.57355602418427	4.63275196207316	4.70728516992357	-0.480843695295591	0.233596515017867	0.629836294896575
Merged-chr5-139326425-2	chr5	139325925	139326925	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-961.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	3.42446532597775	3.45354253418134	3.81120265776569	3.43577462838494	3.71640511349404	3.68533456298336	0.187867652634583	0.74954412095132	0.937372318570939
Merged-chr6-97449938-4	chr6	97449418	97450418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9368.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.95792734692823	7.24754842945197	7.39770607923075	7.39819299444842	7.47512036814561	7.296740474472	-0.269194523835642	0.341749650365812	0.730980941894702
Merged-chr15-64046065-4	chr15	64045557	64046557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13707.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.62544064758448	6.16485067517472	6.09813584904417	6.54700248004196	6.41178352231262	6.57258863113945	0.293392012841211	0.331049659777739	0.722380198189226
Merged-chr2-118126083-3	chr2	118125592	118126592	+	751.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011580, exon 22 of 22)	3' UTR (NM_011580, exon 22 of 22)	14216.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	4.16936475025333	4.02384263592811	4.26909271790573	4.09833265003925	4.10372869791032	4.33581193840379	0.0691529623288918	0.884698784935451	0.973538624783452
Merged-chr15-79409484-4	chr15	79408983	79409983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6180.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	7.54890854080907	7.20770155139705	7.02128527404323	7.28527674297136	7.46188942846712	7.15816056069417	0.0407878075099704	0.878759876400496	0.972000507462599
Merged-chr1-170255707-4	chr1	170255202	170256202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151590)	promoter-TSS (NR_151590)	37.0	NR_151590	622708.0	Mm.389210	NR_151590	ENSMUSG00000096964	Gm6345	EG622708	predicted gene 6345	pseudo	6.3335058980002	6.34269050418323	6.17541190437233	6.33427316803142	6.10354620025417	6.05709743162172	-0.198785300099437	0.485981237231073	0.827641640456729
Merged-chr12-111912003-4	chr12	111911544	111912544	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3989.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	6.13478605720132	6.25790776131327	5.85204130384514	6.09700076406583	6.14577343610187	5.96468282637003	-0.046463484975963	0.877563796089022	0.971661055821362
Merged-chr10-41596826-2	chr10	41596326	41597326	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	RMER10A|LTR|ERVL	28810.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.24995718635373	3.23108070846824	3.54840094460796	3.62565267946358	3.36943586400282	3.5666621724299	0.677272168450822	0.265268169638595	0.663013396735394
Merged-chr7-44374970-2	chr7	44374470	44375470	+	814.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027049)	promoter-TSS (NM_027049)	60.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	4.47137249230966	4.40018347911277	4.4660900878316	4.70255692908754	4.07869366779019	4.6532988406889	0.138863598563265	0.772011856038962	0.943680976839558
Merged-chr7-30418585-1	chr7	30418085	30419085	+	547.0	f1_c57bl6.idr	intron (NM_011827, intron 2 of 3)	intron (NM_011827, intron 2 of 3)	1269.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	6.41651940517741	6.47500867702215	6.7046232852026	6.86726636713476	7.05715250254212	7.03140683047286	0.719736919113579	0.0054629050727216	0.0652217375487468
Merged-chr5-74954044-3	chr5	74953532	74954532	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	4838.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.66440303080148	4.1815548163451	4.15328155943184	3.67632928233062	3.3585350438499	3.85519887915883	-1.22730630693442	0.0402037030356708	0.249684260500977
Merged-chr11-117119338-8	chr11	117118795	117119795	+	983.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	RSINE1|SINE|B4	4123.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	7.19716487262122	6.9307294421843	7.08571807404012	7.02815311278142	7.33883672073503	7.01096692989962	0.10346536627095	0.687441265608851	0.917146819342952
Merged-chr14-66242915-4	chr14	66242434	66243434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-29110.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.58233841461593	6.39782249116023	6.46477756172986	6.54629502739456	6.64953872597857	6.59431702440219	0.183755438349711	0.482751699864119	0.825764257746495
Merged-chr7-66135267-2	chr7	66134767	66135767	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	25752.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	6.92559116090345	6.99297571350773	7.10575571965307	6.98372681286751	7.11696682128595	6.98106201193492	0.0420294190569106	0.862164426520299	0.967996224966109
Merged-chr7-58399270-4	chr7	58398760	58399760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258942.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	5.14829159804463	5.09010939123471	4.81349452880369	4.75385968160197	4.73002634377438	5.19250617994398	-0.296837235342629	0.466799276314361	0.817652165708111
Merged-chr1-157416001-1	chr1	157415501	157416501	+	565.5	f0_balb.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-3406.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	4.28329968675391	3.97934627283829	4.80102646427401	3.68882686244221	3.66432390683106	4.20938734886297	-1.47808363791316	0.0117271985827755	0.11243193221288
Merged-chr18-38339565-3	chr18	38339085	38340085	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-592.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	6.71186579516609	7.16048033417886	6.90611753295258	6.63635251849907	6.72839588848958	6.37559506314704	-0.536482233349689	0.0580846078525197	0.311391279569129
Merged-chr5-102451209-4	chr5	102450688	102451688	+	692.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30203.0	NM_146161	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.42898995814256	3.40092770116982	3.58388490519311	3.67338541766275	3.65130675518163	3.54677677359752	0.577576685105052	0.307087630594079	0.703179799836868
Merged-chr7-135654571-4	chr7	135654002	135655002	+	825.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-2188.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	5.96647612668124	6.05089632759239	6.00112139944222	5.84870178188591	5.95961123900876	6.06182657143856	-0.0898310078499495	0.758851962341304	0.940310803499772
Merged-chr6-54939375-2	chr6	54938875	54939875	+	596.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 5 of 12)	exon (NM_172729, exon 5 of 12)	32286.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.07342142064282	4.03855220356034	4.33538067702672	4.01107019713242	4.05434055422983	3.99783871278868	-0.356389473259056	0.465709586085937	0.817146354802119
Merged-chr3-51223905-2	chr3	51223405	51224405	+	952.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009834)	promoter-TSS (NM_009834)	-542.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.09245548662207	4.70397685078056	4.81420775103071	4.9120093079959	5.08028380787662	5.12944692807953	0.341416968130751	0.386101403702582	0.766921835742467
Merged-chr8-117334589-2	chr8	117334089	117335089	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-14581.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.0697412823635	2.91787639516245	3.56403086970996	3.13755722994519	2.96119782940673	3.48806268643855	0.00411442094446279	0.995489845780853	0.998961028701257
Merged-chr2-84642268-1	chr2	84641768	84642768	+	652.0	f0_balb.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	7212.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.77738141136064	5.21637709705122	5.05170316714751	5.43453923747751	5.29001193750799	5.6492737913752	0.862179294572479	0.0234421594081138	0.179399638466546
Merged-chr3-144697337-4	chr3	144696845	144697845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 8 of 10)	(T)n|Simple_repeat|Simple_repeat	22990.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	8.26569337339101	8.27090002778716	7.73347721310209	8.10989335060971	8.4427257663121	7.71393930981942	0.0169325485898616	0.953138373548979	0.989359300570295
Merged-chr7-145283232-4	chr7	145282732	145283732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	779.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	7.83706572164744	7.96094882253051	7.70406142294858	7.76025929257524	7.91627823256104	7.30952986050067	-0.206178158078919	0.427368956643608	0.794314723207389
Merged-chr5-100518310-4	chr5	100517820	100518820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012001)	promoter-TSS (NM_012001)	11.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	6.01935425618018	6.24847260677702	6.3280368124835	6.23293930498235	6.26667615352436	6.18886102168433	0.0560175591392235	0.844057132224377	0.963711687630021
Merged-chr2-26912355-2	chr2	26911855	26912855	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013721, intron 4 of 7)	intron (NM_013721, intron 4 of 7)	1548.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	4.02836403571103	3.78827985391374	4.1386651150089	3.93963557432126	3.85683634432142	4.1171077593588	-0.0546594719556194	0.915178408927334	0.980959026698783
Merged-chr8-84687856-4	chr8	84687356	84688356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025788)	promoter-TSS (NM_025788)	6.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	6.70747532311278	6.6311693222416	6.82528800728581	6.8188072290522	6.34366729556326	7.00465299954534	0.0330710014340524	0.911292840374298	0.98004232415071
Merged-chr5-118636972-4	chr5	118636493	118637493	+	947.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	76274.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.80255442872573	3.70824827281618	3.75912726314135	3.85555170475144	3.79803894802918	4.20093078599631	0.618105435738353	0.245367033912094	0.642452567977518
Merged-chr2-75659803-4	chr2	75659270	75660270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146130, intron 1 of 10)	CpG	480.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	8.70345945243452	8.50063233534286	8.27809220622835	8.59101343818033	8.45781681390861	8.08452698662972	-0.152062851931116	0.538324435032886	0.855080856348593
Merged-chr4-3689837-2	chr4	3689337	3690337	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	MTD|LTR|ERVL-MaLR	11716.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	5.20567506472337	5.22532395168491	5.70954372450379	5.82777337601946	5.8542712580882	5.89093112272203	0.88213083324127	0.00993663493452447	0.100013005882655
Merged-chr1-105781859-3	chr1	105781324	105782324	+	892.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	1101.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	5.82671757129965	5.93897802767723	6.29095043232276	6.15483178261997	6.13087474301713	6.17444553977717	0.224880523857915	0.458729015190039	0.813236440920954
Merged-chr14-65069468-2	chr14	65068968	65069968	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	28638.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	2.56931978670814	2.56063464132058	2.68666605405593	2.46550324248009	2.61480688745492	2.57373690216259	-0.283230908369299	0.713871346465132	1
Merged-chr6-136468580-4	chr6	136468092	136469092	+	814.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50259.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.70993142910369	3.54908642489639	3.60549778669116	3.51242947213122	3.68697870825274	3.39467177626507	-0.274654479369537	0.635088977862652	0.896439353901449
Merged-chr10-85872473-2	chr10	85871973	85872973	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	642.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	5.67439295346685	5.75708657147642	5.68196329464349	5.64097817035274	5.83029766660306	5.42190934005903	-0.0910194594353698	0.781017746654916	0.946131359116896
Merged-chr18-12939342-4	chr18	12938846	12939846	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	2495.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.90062513673412	3.90866316277649	3.56291068659412	3.60224329282107	3.93664327448015	4.00101439823563	0.156437275083881	0.781287394767083	0.946174647340264
Merged-chr1-172470194-3	chr1	172469688	172470688	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-5172.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	3.79321493821967	3.64871737476914	3.96342573288344	5.29307247854451	5.54753456750902	5.54887827342659	4.79409254509774	3.92118309451263e-16	1.3434605182748e-13
Merged-chr4-139194489-2	chr4	139193989	139194989	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	378.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.04783358346273	5.94157785806543	6.161191736094	6.36095803577816	6.51742760327573	6.71306119403935	0.807289855388752	0.00466040575835548	0.0583395580474263
Merged-chr2-43761984-4	chr2	43761468	43762468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	13144.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	4.07584848686109	4.39712235159731	4.36587175531357	4.14907422760192	4.01845844663371	4.47261980500735	-0.189186008282934	0.699859067721662	0.920753377048759
Merged-chr15-78595625-2	chr15	78595089	78596089	+	840.4166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1458.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	3.93846904997845	3.93296376261829	3.90725675170766	4.16578423253423	3.79995814456261	4.16653078835766	0.358519453705544	0.484072535143959	0.82665199605554
Merged-chr2-150787445-4	chr2	150786944	150787944	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	648.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	5.51184267840512	5.46811822792739	5.91684123726338	5.52475693162604	5.32540178254824	5.69731607350349	-0.229345650724158	0.515200836644865	0.843376573195867
Merged-chr7-104465618-3	chr7	104465104	104466104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-411.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	7.23486708098325	7.11274050464281	7.03682967409405	7.28437974444855	7.3421025644744	7.28127342149611	0.253213172865728	0.27820820400249	0.675512802785001
Merged-chr18-7693110-4	chr18	7692635	7693635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-66272.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	3.89028441907325	3.88398228591826	4.03499852617355	4.96002735637711	4.71925781453717	4.49147299884	2.19562068764191	4.35131841626126e-06	0.000196240922916134
Merged-chr2-136915236-4	chr2	136914715	136915715	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	15864.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	3.18185876675494	3.20576552980467	2.98823742943217	3.3545430486394	2.95742972905073	3.30159582557172	0.335949521129024	0.621236213854857	0.890625390716465
Merged-chr5-117363600-1	chr5	117363100	117364100	+	825.0	f1_balb.idr	exon (NM_021539, exon 2 of 9)	exon (NM_021539, exon 2 of 9)	6295.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	6.0919543391215	5.83120480026114	5.89275402828539	5.33628086811905	5.22096066399142	5.28408129581966	-1.25061980864407	0.0001271047640886	0.00347327855838564
Merged-chr4-9670096-1	chr4	9669596	9670596	+	818.0	f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-752.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.54187450408566	5.49421347608042	5.58232009924926	6.52723304198154	6.24146008875292	6.20873366251007	1.40018649387842	4.15163609669243e-06	0.000187846294906789
Merged-chr4-55364099-3	chr4	55363599	55364599	+	856.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	MIRc|SINE|MIR	14057.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	5.49262780412137	5.67789421127098	5.42837471252762	5.48814750450587	5.7709940412571	5.84040516948582	0.303157188088044	0.362873669644121	0.748432003166547
Merged-chr11-20113411-2	chr11	20112906	20113906	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-455.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	8.07273250200039	8.16083120219824	8.06041421832596	8.27662544247308	8.70516167935699	8.21988230022528	0.458447318840172	0.053206508500006	0.295718867094282
Merged-chr5-140733491-4	chr5	140732999	140733999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	9372.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	7.11740528421807	6.81828829652787	6.82431693935037	6.76998267159868	7.11132085807373	6.5845426641852	-0.118520210456724	0.676873945123247	0.912576714783976
Merged-chr14-65102591-3	chr14	65102093	65103093	+	870.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4487.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	6.31706254856275	6.26989094043115	6.02611236872627	6.36012002672698	6.6182692910584	6.49841608782492	0.459160828287536	0.104941320403408	0.432279256653108
Merged-chr11-104544735-4	chr11	104544247	104545247	+	868.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145436, intron 1 of 18)	intron (NM_145436, intron 1 of 18)	5873.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	7.05408309378963	7.23568958589439	6.71369209137429	6.92335004329002	7.35803883333686	6.66894083922249	0.0027596077044195	0.992847555654708	0.998596132080853
Merged-chr13-41595356-1	chr13	41594856	41595856	+	592.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10860.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.58385122047007	3.67760794212684	3.77461237963936	3.73575712052405	3.63800424756763	3.98533134759325	0.360051829262654	0.51022044759243	0.84078153846538
Merged-chr8-124922703-4	chr8	124922190	124923190	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 1 of 4)	URR1A|DNA|hAT-Charlie	24804.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	5.80884051247115	5.83045085948475	5.25503894070225	5.11791047550749	4.88629196598303	5.21809158482723	-1.18125906608848	0.00174090852934429	0.0277611186105174
Merged-chr6-16965851-4	chr6	16965354	16966354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67413.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.95188024207174	3.61283423284193	3.56591398794774	3.96884519688053	3.76052334297225	4.09708569215674	0.676494301456178	0.227013137490292	0.622066543880371
Merged-chr11-93996831-4	chr11	93996296	93997296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	705.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	9.00703130560533	9.24391094741371	8.84508344843763	8.84587357107865	9.21004459448438	8.67876492770433	-0.148135322257831	0.543286233785881	0.857550240744675
Merged-chr2-5805761-2	chr2	5805261	5806261	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 8 of 12)	intron (NM_133837, intron 8 of 12)	-39273.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	2.88255739988484	2.71239802520621	2.88471814159507	2.88563794633285	2.60469352568032	2.89782749500453	-0.1476786259034	0.841377051149831	0.962909549034125
Merged-chr18-25882726-2	chr18	25882226	25883226	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128569.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.12609613331688	4.14038900470328	4.08479462047046	4.00842635214545	3.80767450541775	4.00959162740599	-0.537422391557339	0.27443921843408	0.67173427081911
Merged-chr8-64850502-2	chr8	64850002	64851002	+	678.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-578.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	4.91145146250323	4.89463956205043	4.58370762205011	4.76545957982807	4.61275273721568	4.925230547969	-0.116208495080693	0.777852561625428	0.945251190347279
Merged-chr10-53925018-2	chr10	53924518	53925518	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 9 of 12)	intron (NM_008548, intron 9 of 12)	150778.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	4.71899318276145	4.55861526256609	4.42418946670164	4.17089853135876	4.07035712675776	4.06355714080277	-1.27101400028549	0.00578500222768833	0.0679117473704135
Merged-chr16-91839623-4	chr16	91839121	91840121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 18 of 39)	exon (NM_010587, exon 18 of 39)	92009.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.43803153924508	7.17679571810018	7.36792453080498	7.4769906719334	7.67792889395533	7.11133750060314	0.181492592938718	0.491805554197867	0.830769126788068
Merged-chr3-115704442-4	chr3	115703942	115704942	+	725.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10613.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.64032121862431	2.71185256138336	2.72695753351478	2.73287891555761	2.46443264425544	2.47714508162076	-0.727826248599612	0.355769216110489	1
Merged-chr8-77209462-2	chr8	77208962	77209962	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 6 of 8)	intron (NM_001083906, intron 6 of 8)	306954.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	2.19172733055944	2.31649536653604	2.53877344325343	2.03866583926588	2.12083609694303	2.0302921531777	-2.1673270106176	0.0299650153007301	1
Merged-chr16-44132606-2	chr16	44132106	44133106	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	6653.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	3.84560207649209	3.95319716814255	3.63741373574889	4.06011746142008	4.03292300351585	3.97882282484926	0.603366790612445	0.246178236528177	0.643286900808482
Merged-chr18-62548851-4	chr18	62548334	62549334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177829)	promoter-TSS (NM_177829)	29.0	NM_134136	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	7.80486878224866	8.20902758826097	7.73449129799379	7.77135744410166	7.91467256713533	7.78215377081283	-0.162582536311204	0.505745304637584	0.838177729332582
Merged-chr7-120947325-3	chr7	120946849	120947849	+	740.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	29605.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	4.35674611135823	4.49243726454716	4.47306573549185	3.99411524719177	3.82107605065742	3.890745973273	-1.55238418263043	0.0013877885074395	0.0232906627928653
Merged-chr2-172477940-3	chr2	172477458	172478458	+	949.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5404.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	2.41014471041501	2.49749974853591	2.55881153829413	2.2814001042877	2.23653558951844	2.57105327896216	-0.783885843719507	0.355703215335848	1
Merged-chr6-106440046-3	chr6	106439539	106440539	+	901.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308998.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	4.64813071304402	4.67159911586341	4.54379641331308	4.31449289916967	4.35740397471527	4.20246375907929	-0.828395174833168	0.0579454546244857	0.311048846252846
Merged-chr2-73911342-4	chr2	73910841	73911841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175015)	promoter-TSS (NM_175015)	-15.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	7.57263181927105	7.65591200034153	7.72625400750309	7.79276804401008	7.46529458680385	7.73128267505618	0.0226570002212012	0.922365604843441	0.982542868764899
Merged-chr17-17889880-4	chr17	17889375	17890375	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2051.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	6.38454467301503	6.65094158964046	6.22118972516537	6.8432580390506	6.49023919860673	6.59073014634512	0.331934714162313	0.253917588057205	0.651117231535132
Merged-chr2-27565543-3	chr2	27565045	27566045	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50398.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.18592042415072	3.96834629510489	3.93054602227178	3.72467881258775	3.66875984779607	3.79571308833687	-0.987353486333478	0.0585681766388727	0.312958004902023
Merged-chr8-78626839-4	chr8	78626346	78627346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	117518.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	4.55413135447081	4.59095122658679	4.53479205808857	4.42749881486198	3.97808654519919	4.56099465549995	-0.581017589542771	0.220666506845989	0.615219256211797
Merged-chr9-119322841-4	chr9	119322372	119323372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	-445.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	8.67500188564913	8.94794098553727	8.60615166326844	8.70303729655991	8.93811447432019	8.43608936010005	-0.0547557635742976	0.818527768211322	0.956987321171514
Merged-chr14-70351445-4	chr14	70350964	70351964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135151)	promoter-TSS (NM_001135151)	-40.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	5.42149312111694	5.1917458582167	4.96043037284865	5.18535041666591	4.80097625394634	4.50577584287477	-0.725202111592	0.0950454268043202	0.411104001609782
Merged-chr8-83653698-6	chr8	83653350	83654350	+	834.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	1172.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	4.26758272219205	4.12353916366201	4.12492070278871	4.37483950238037	4.29902269912262	4.14551676898116	0.286948076603912	0.536932299486389	0.854250636315698
Merged-chr19-46608162-2	chr19	46607662	46608662	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	9056.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.30222449025617	4.2283368592848	4.66057282145809	5.06231205712432	4.82489005009315	4.38594658121848	0.982124291224524	0.0383906068822318	0.2425700977642
Merged-chr12-40431748-3	chr12	40431236	40432236	+	803.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	RMER6B|LTR|ERVK	14054.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	6.32765911205181	6.30078621330212	6.09103433542588	6.5197241722373	6.60809104790435	6.15239973892557	0.332058102651333	0.258778029274229	0.656295597544882
Merged-chr1-179803813-4	chr1	179803333	179804333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026375, exon 1 of 36)	5' UTR (NM_026375, exon 1 of 36)	182.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	6.86511821624598	6.7346021635039	6.65555518157848	6.81017274309244	6.55152359153479	6.42690586285881	-0.233144182934323	0.3883523241339	0.768214408180843
Merged-chr5-105515508-4	chr5	105514984	105515984	+	951.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3987.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.14739572458943	5.64371326115033	5.045587387918	5.43113576297135	4.8548710155135	4.66999741876805	-1.28126719636771	0.104979741127085	0.432306361005943
Merged-chr7-101933962-4	chr7	101933460	101934460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027053)	promoter-TSS (NM_027053)	-103.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	5.82874756079473	5.9387436587812	5.94151477850402	6.17367517380089	5.96915271529202	5.85576056810306	0.188921843789327	0.529785838789824	0.851048470960073
Merged-chr11-68973645-6	chr11	68973157	68974157	+	977.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285442, exon 1 of 5)	exon (NM_001285442, exon 1 of 5)	198.0	NM_021329	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	4.13931030305036	4.54449583026044	4.59987507423147	4.18936955891045	4.13323662479061	4.25337868376622	-0.66561745653703	0.161247167090939	0.53399893962969
Merged-chr14-26441240-4	chr14	26440736	26441736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 14 of 22)	PB1D10|SINE|Alu	83689.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	7.41754473589988	7.56620474990794	7.0629707226466	7.44903101355688	7.71442182725611	7.20086128990181	0.156507527800612	0.569276644082445	0.8688875602138
Merged-chr3-51727935-1	chr3	51727435	51728435	+	672.333313	f0_balb.idr	intron (NM_001004176, intron 2 of 4)	L3b|LINE|CR1	66756.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.43147966869454	3.3884898933921	3.35599289137853	3.10569748251791	3.17932864853911	3.07655104634731	-1.13611243071568	0.0743277667111327	0.358646048437034
Merged-chr7-139248257-4	chr7	139247741	139248741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-241.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	8.62512005285479	8.92605113524253	8.46415488388376	8.75388487674986	8.78660368874374	8.66216236139759	0.0618532200794193	0.782204369941683	0.946479459866999
Merged-chr3-109026824-4	chr3	109026294	109027294	+	903.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	813.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	6.2545116301024	6.23983388948671	6.15660760473396	6.59867268457268	6.86436961832374	6.48019955020722	0.725749163585717	0.00921895628376631	0.0951489598684727
Merged-chr7-43544621-7	chr7	43544129	43545129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-11458.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	5.68358797903342	5.55213388764133	5.61685865264092	5.46985474450359	5.253421355619	5.65235625740498	-0.310397157422686	0.356782681735462	0.743460467581681
Merged-chr12-35039795-4	chr12	35039304	35040304	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7385.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.72222736711442	7.13282710476475	6.92842410435421	6.81042881727039	7.26652042483598	6.88594359271186	0.110102428609529	0.696682160505377	0.919581992279881
Merged-chr16-18289032-1	chr16	18288532	18289532	+	1000.0	f0_c57.idr	intron (NM_033324, intron 1 of 13)	CpG	136.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	5.48257947787256	4.9559921941882	5.40315122321165	5.86463679859154	5.20094249108682	5.80930294496761	0.674742579439843	0.0940591878546316	0.408558583773876
Merged-chr17-21451100-2	chr17	21450600	21451600	+	710.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009558, intron 1 of 4)	Lx5b|LINE|L1	726.0	NM_009558	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	5.212112458253	5.46143406004625	5.06246545591015	5.30982265278162	5.23534462091184	5.23231462273222	-0.0155923488683795	0.965490297783697	0.991992550447439
Merged-chr16-22031878-5	chr16	22031417	22032417	+	748.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 9 of 16)	ID_B1|SINE|B4	22433.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	5.66540673289302	6.06485859712675	6.05017496614794	5.59717616028512	6.01764852538075	6.00143193662376	-0.0862695343923392	0.796071886959046	0.95140420098761
Merged-chr9-70503312-4	chr9	70502799	70503799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357494)	promoter-TSS (NM_001357494)	79.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	8.33149362046949	8.10013544452105	8.06757777199027	8.62894183268396	8.25560546679585	7.97134444843024	0.203216084005983	0.428791425912492	0.795498170360422
Merged-chr2-32095542-4	chr2	32095051	32096051	+	812.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145521)	promoter-TSS (NM_145521)	23.0	NM_001355238	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	4.11263896879312	3.87813563120055	4.09339371591396	3.79520048125634	4.30256358113652	4.0675436853667	0.145528574457878	0.780702075031985	0.946078518476608
Merged-chr4-62523579-2	chr4	62523079	62524079	+	759.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021498)	TTS (NM_021498)	1435.0	NM_021498	59001.0	Mm.27444	NM_021498	ENSMUSG00000028394	Pole3	1810034K18Rik|YBL1	polymerase (DNA directed), epsilon 3 (p17 subunit)	protein-coding	2.27997485044629	2.43640980063267	2.40925235831327	1.96102267539853	1.93607022873545	2.08785370558559	-3.85515828657353	0.00156586123865182	1
Merged-chr2-129624781-2	chr2	129624281	129625281	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29319.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.39404530526766	4.13921728384619	4.54559024599574	4.40141458135198	4.46116412555659	4.44899785088828	0.19887366252856	0.659727595304413	0.905597666497676
Merged-chr3-88721193-4	chr3	88720696	88721696	+	848.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	RSINE1|SINE|B4	4342.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	6.21866472357958	6.12957440632572	5.76371681841679	6.56574300167979	6.70239094247837	6.08939393366112	0.705943692418534	0.0309009949170094	0.21275715663547
Merged-chr6-113047537-4	chr6	113046976	113047976	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355266, exon 2 of 10)	exon (NM_001355266, exon 2 of 10)	1174.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	6.98613681137779	6.89445005275425	6.89885003177039	7.22801897169916	7.63090081924025	7.25818482283824	0.700286512385924	0.00603253124108021	0.0700467289293612
Merged-chr11-97780773-2	chr11	97780273	97781273	+	742.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028078)	TTS (NR_028078)	993.0	NR_028078	100302498.0	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	4.17492843835419	4.029386984795	4.38207572539999	4.22405349395815	4.32265068271186	4.1376614028752	0.116308870855514	0.806663834390978	0.954302755839973
Merged-chr4-125118152-4	chr4	125117655	125118655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153159)	TTS (NM_153159)	9726.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	6.68286510951738	6.76827378988899	6.717606112017	6.43437411664172	6.65412092669237	6.54473396490691	-0.272554733715264	0.292658946020684	0.689878020096055
Merged-chr5-31291175-4	chr5	31290685	31291685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-71.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	7.38551232037348	7.790673964736	7.20537860518626	7.27931677310318	7.8631393617212	7.09089768315651	-0.0348485749608858	0.911656313338617	0.980154516820379
Merged-chr15-9127751-1	chr15	9127251	9128251	+	1000.0	f0_balb.idr	intron (NM_013787, intron 3 of 9)	intron (NM_013787, intron 3 of 9)	12703.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	4.6929661944466	4.52792366714657	4.78793700392213	4.16005047585254	3.72311906221902	4.39396798382728	-1.49152226185129	0.00360465533828715	0.0481747769656597
Merged-chr9-27098219-3	chr9	27097716	27098716	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023277, exon 9 of 9)	3' UTR (NM_023277, exon 9 of 9)	57205.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	2.46717886737105	2.46592396914349	2.39354101658517	2.70762254045147	2.42202900329006	2.78702576704002	1.1647140863163	0.154765234437152	1
Merged-chr14-60736774-4	chr14	60736277	60737277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	3873.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	5.57138511231573	5.51134309909005	5.49346984089151	5.64569777896593	5.68842754853816	5.49720141900865	0.173858183314121	0.587987722197407	0.876182349656829
Merged-chr11-59534216-2	chr11	59533716	59534716	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7353.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	4.46260198477188	4.53110158195355	4.8421310703574	4.34951352068157	4.51565540638561	5.09623518662388	0.162700795208802	0.732673019343872	0.931839011711124
Merged-chr8-113636380-3	chr8	113635886	113636886	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048143, intron 2 of 5)	intron (NM_001048143, intron 2 of 5)	587.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	4.91176822314307	5.00133114182068	5.29936548122031	5.31301749421007	5.54171255047458	5.47890998295844	0.771178819558622	0.0328754544786988	0.220943446915723
Merged-chr11-100415134-2	chr11	100414634	100415634	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176830)	promoter-TSS (NM_176830)	-315.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	3.35427242439054	3.23985270412708	3.18329625296643	3.36493499430307	2.77984110046227	3.1366330221119	-0.607251259569957	0.401096955505083	0.777180808831869
Merged-chr17-80564774-4	chr17	80564287	80565287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-953.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	7.90999800275102	8.20386358896547	7.66056105868275	7.72285983542487	8.39853877388064	7.63925439140948	0.0414815655606309	0.890643812786628	0.974547949258886
Merged-chr14-79430470-4	chr14	79429969	79430969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024135, exon 1 of 1)	3' UTR (NM_001024135, exon 1 of 1)	3958.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	5.60497034234797	5.71576356118107	5.60271888440833	5.76805176566362	5.7955044418204	5.87157959672248	0.299503402185967	0.330852904194065	0.722226411767471
Merged-chr2-165858230-3	chr2	165857729	165858729	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-56.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	8.40525771483037	8.40220727332455	8.34194714319431	8.28997374700733	8.60504913971492	8.27433499195367	0.0287857668121045	0.894949771941362	0.97562294541392
Merged-chr14-17660910-4	chr14	17660413	17661413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-47.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	7.74566132220348	8.07310364862342	7.88293088220749	7.52796539574462	7.55848116831674	7.70739272541424	-0.45052112683139	0.0504289767189872	0.285740163080251
Merged-chr12-8925076-2	chr12	8924576	8925576	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3769.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	5.8919256016269	6.00966476369485	5.8921056027096	6.2392497540212	6.42802737460061	6.18400874485584	0.612925408727953	0.0337782458900986	0.224723777406518
Merged-chr8-46628868-4	chr8	46628362	46629362	+	876.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	11571.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	4.16174477960184	3.78396927930597	3.81993508803546	3.81434702649998	4.04661828623011	4.4691226831993	0.561115457238494	0.312042421698974	0.706880086573454
Merged-chr12-8667670-4	chr12	8667189	8668189	+	869.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6445.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	3.91767553834813	4.03644277963756	3.90557807094571	3.70411695677195	3.84983258613302	3.65985015813799	-0.668239578190133	0.205104101875653	0.595694220420628
Merged-chr9-22225286-3	chr9	22224784	22225784	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	-419.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	5.99524747665546	5.85967769617788	5.86946075082939	6.33417440678147	6.05922598330542	5.90623261019542	0.355580582868802	0.244803956210345	0.642231219483255
Merged-chr13-12462012-1	chr13	12461512	12462512	+	865.3333130000001	f0_balb.idr	promoter-TSS (NM_018886)	promoter-TSS (NM_018886)	-274.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	6.83979209726986	6.67607717857648	6.97566858940888	6.78894365501737	6.909469671717	6.40237426435757	-0.155571027256789	0.581434565896773	0.873298754324848
Merged-chr1-152904675-4	chr1	152904169	152905169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2023.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.57900672929434	7.85167538854242	7.40648069480923	7.64485029991575	8.06795385189837	7.14112146818852	0.0799327578465202	0.795816581201688	0.951357768068358
Merged-chr1-154175551-4	chr1	154175056	154176056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-25631.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.91864940816282	3.77907119362215	3.68856545407832	3.77211043856725	3.54472729521802	3.41344063097704	-0.721711604329318	0.206476789418462	0.597141275948059
Merged-chr17-28208206-3	chr17	28207716	28208716	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	438.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	5.35911791606861	5.7866662530192	5.05590064575073	4.51294535454542	4.32900484471906	4.54920296113478	-2.20313600773754	3.26255637939957e-07	2.02137595842948e-05
Merged-chr12-102697738-2	chr12	102697238	102698238	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	7131.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	2.84997027588838	2.84206915100649	3.02155191488343	2.97507793139807	3.20230293299856	2.97440648374439	0.745811802363006	0.279901150674171	0.677606556262442
Merged-chr17-25240509-1	chr17	25240009	25241009	+	762.0	f1_balb.idr	promoter-TSS (NM_001346737)	promoter-TSS (NM_001346737)	339.0	NM_026676	68327.0	Mm.180687	NM_026676	ENSMUSG00000015126	Tsr3	0610007P22Rik|1110014B11Rik|AL022759	TSR3 20S rRNA accumulation	protein-coding	5.44034852024437	5.54465314176027	5.67685380615803	4.99542562347724	5.12560632820465	5.38843094277509	-0.754752505021584	0.0330212372566488	0.221547420549204
Merged-chr10-93242344-4	chr10	93241842	93242842	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146239)	TTS (NM_146239)	68817.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.34112275563623	4.11712383670304	4.02044426543015	3.90170719962373	3.97862387819784	4.52010706998312	-0.0461993130070361	0.930272906053682	0.984485771257693
Merged-chr7-98085911-2	chr7	98085411	98086411	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23337.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	5.70264014552101	5.52504593598675	5.65997222546698	5.98662321663543	6.01738031674494	5.82783046231118	0.582348278853815	0.0582053769285611	0.311757515511536
Merged-chr11-40733989-4	chr11	40733461	40734461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	300.0	NM_001290697	52653.0	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	6.32957003567735	6.62850214050206	6.49248496163592	6.56595604143686	6.82787266651492	6.53404169308861	0.267550298142514	0.334076054284167	0.724748007849347
Merged-chr3-88718050-4	chr3	88717530	88718530	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	1176.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	6.48351983570434	6.81728487527227	6.67321119349474	6.7004788758032	6.97357367779365	6.91209502789794	0.316270766526847	0.237847429687613	0.634375314429454
Merged-chr19-5931756-4	chr19	5931253	5932253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6937.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	7.18802845066176	6.67970058949975	6.61215827101328	6.94637624187878	7.02654079213741	6.72282016976297	0.0748902188303903	0.79801034503741	0.951930937621884
Merged-chr1-34803337-2	chr1	34802837	34803837	+	648.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	intron (NM_183019, intron 1 of 9)	1615.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	2.62940714564728	2.61982125632523	2.86999691874541	2.62376606515162	2.41528476972275	2.76709358491835	-0.570290493387977	0.470850872042435	0.819784379107259
Merged-chr10-58445671-2	chr10	58445171	58446171	+	833.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1181.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	8.05419544845844	8.16973334483025	7.80142550435779	8.13481515442369	8.38427948032364	8.08648430611497	0.267502269870789	0.251402648413192	0.648858219496158
Merged-chr10-51824093-4	chr10	51823607	51824607	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-66913.0	NR_045158	71090.0	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	3.22146324749315	3.48457044115885	3.23070314324612	3.33132733306876	3.52006834087461	3.52872979140231	0.532423242626512	0.387162651585635	0.767462350491678
Merged-chr3-108259571-2	chr3	108259071	108260071	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	2645.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	3.3483322635307	3.34506266805067	3.40993885373583	3.33581604872422	3.48591149832685	3.42566603300494	0.207062432206225	0.725467820388999	0.929698613727862
Merged-chr3-105892045-4	chr3	105891540	105892540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-12381.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	7.49218395636355	7.52288401064332	7.52328251837326	7.57784216800009	7.84949150935041	7.41306698777028	0.180113639708625	0.453439481804514	0.809761744660326
Merged-chr2-5951417-4	chr2	5950919	5951919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-50.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	7.16620227803175	7.2334605192319	7.024292908739	7.35206806030432	7.26794992238552	7.0411863330637	0.125068517704251	0.609590432001909	0.885291921913166
Merged-chr6-122874062-3	chr6	122873501	122874501	+	850.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-556.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	7.14347860010503	7.26490439529707	7.6413392732464	7.2738968665538	7.57163702392618	7.48449863249442	0.134814377072346	0.606704767654679	0.884254358240743
Merged-chr1-144197911-4	chr1	144197428	144198428	+	910.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20556.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	2.66008350241719	2.85124914171038	2.68046111134959	3.01396906835091	3.0841912749385	2.94823946237081	1.41297206063942	0.0547950135515493	0.300731052542531
Merged-chr10-117982759-3	chr10	117982260	117983260	+	997.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57301.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.15203620923029	6.50193679501846	6.28073761701952	6.24703610604893	6.37214401667771	6.1292067905589	-0.10302789087989	0.722959150010398	0.928984275173032
Merged-chr17-29398370-5	chr17	29397971	29398971	+	946.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37557.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	7.14096747878102	6.8734155820542	6.67589024387203	7.45318127307476	7.41521426456164	7.1506184193841	0.648031002365784	0.0148043011346577	0.131451956974986
Merged-chr6-92987953-3	chr6	92987445	92988445	+	974.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47363.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	5.58139974035462	5.79292937644554	5.11350937458111	3.81215200202615	3.47344574633439	3.89167572508838	-6.37372314995889	1.59397154510727e-12	2.96714058893257e-10
Merged-chr11-48872426-4	chr11	48871928	48872928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	7.75799920458735	8.10266698125929	7.60404131562534	7.76143418412276	8.16451225057871	7.63126986266414	0.0519804878856266	0.847908062129573	0.964318271116593
Merged-chr10-94035978-4	chr10	94035465	94036465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304572)	promoter-TSS (NM_001304572)	-36.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	6.43702359238413	6.584726031594	6.32513226959954	7.19450418839888	6.90366438114709	6.6152276386276	0.742917137843441	0.00978101986642927	0.0989614665668588
Merged-chr7-127479928-3	chr7	127479379	127480379	+	908.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5342.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	7.26455167468446	7.49018601869371	7.30782549969141	7.40048964033201	7.68099207858204	7.79454567227939	0.399671885842512	0.102160471589095	0.426200477311877
Merged-chr17-6783774-2	chr17	6783274	6784274	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-994.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	4.57885558783867	4.66785854417938	4.05262774098452	4.50176008834683	4.23672692741709	4.50829448371916	-0.137730015995738	0.778584188104976	0.945520893795831
Merged-chr13-107100265-2	chr13	107099765	107100765	+	723.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77695.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	2.67929940073722	2.72785894073462	2.61586201075139	2.80588844169943	2.64710108459321	2.81514008264096	0.41303982503856	0.576898867558788	1
Merged-chr4-71489952-2	chr4	71489452	71490452	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	710941.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	3.06978905729387	3.30397732057274	3.31517473520129	2.91401103933893	3.11435747659968	3.10503830294395	-0.799267236270079	0.232507540631371	0.628804775351458
Merged-chr10-44598882-4	chr10	44598401	44599401	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140153.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.62981109242046	7.47404767669742	7.61597753855065	7.69465160479216	7.99550226105127	7.61587179940406	0.309216215699061	0.19266983116994	0.579656115647455
Merged-chr17-31078637-2	chr17	31078137	31079137	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	RMER30|DNA|hAT-Charlie	20943.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.20855779562609	5.99159505552005	6.32940003548238	6.4775624921024	6.10493166117348	5.93365203666744	0.0344454969361218	0.913096110151842	0.980541282138254
Merged-chr13-113426115-3	chr13	113425621	113426621	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76723.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.32226165052004	2.897896861338	3.12126696256873	3.27006436891631	2.84925353318439	3.1352370729086	-0.136445896595322	0.84817083593645	0.964318271116593
Merged-chr12-55399690-2	chr12	55399190	55400190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011968, intron 1 of 6)	intron (NM_011968, intron 1 of 6)	865.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	7.05123342853413	7.60312622816083	7.16227800221448	7.5385241945808	7.6723698737353	7.4924243326314	0.396779485535517	0.135176085466953	0.491294119824757
Merged-chr2-71662200-4	chr2	71661692	71662692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-57225.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	5.99049056527128	5.82527990122421	5.94694749810885	6.13320543553275	6.48910436543944	6.00852832075911	0.546541827423368	0.0775307999413835	0.367421278136612
Merged-chr14-75011189-4	chr14	75010684	75011684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-4843.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.17811972542936	6.00664305786278	5.91355654708516	6.03457768569486	5.87338878170951	5.95082564249958	-0.159499074154896	0.591467679807314	0.877648608732646
Merged-chr1-135534209-2	chr1	135533709	135534709	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	51146.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	4.92166577329675	5.00387378276936	4.80172631872227	4.57857538206998	4.57772697205975	4.58450450738076	-0.783658587484337	0.0495536031547302	0.283083982187476
Merged-chr4-62285955-2	chr4	62285455	62286455	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	-474.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.69611974421936	4.52921875792133	4.52735005931736	5.08707803670721	4.63841749264498	4.68069295229222	0.534330323036906	0.21148705012483	0.603945120913907
Merged-chr1-74374408-2	chr1	74373908	74374908	+	811.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-795.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	5.81104153155431	5.59376127408381	5.64826112415883	5.86677824188921	5.43741860202803	5.88659686423667	0.0847431723657397	0.802034718530775	0.953135736456985
Merged-chr10-81642637-2	chr10	81642137	81643137	+	729.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-6432.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	3.29474991051859	3.20947675920139	3.26220519505116	3.23449566641206	3.06789010654145	3.16016928945429	-0.433718594320083	0.491472766330822	0.830563721202653
Merged-chr7-141464009-3	chr7	141463515	141464515	+	996.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-111.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	3.37854893279835	3.21081709988652	3.5014200374107	3.13584446340866	2.98157780666575	3.25096506849262	-1.03082009733643	0.113042254486352	0.449191427529329
Merged-chr15-77610454-3	chr15	77609960	77610960	+	934.8444210000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-14335.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	3.48929657270336	3.1241630877851	3.33310548665393	4.03465424552565	4.40358611439932	4.49418031626528	3.577948995519	1.87870364513641e-07	1.24461124923973e-05
Merged-chr2-49411851-4	chr2	49411350	49412350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39636.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.49900967616495	4.59741437067911	4.88776964835377	4.69298440434537	4.48218930833524	4.77542100287874	-0.032955821952412	0.938619338653449	0.986515091506254
Merged-chr8-83743086-4	chr8	83742587	83743587	+	796.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-1776.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.44839669083459	7.3560882897005	6.93886393407421	7.47370314328287	7.70155708677963	7.6089357033762	0.473018432459303	0.0665837065460422	0.337103562779621
Merged-chr6-149040300-2	chr6	149039800	149040800	+	959.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177192, intron 6 of 20)	intron (NM_177192, intron 6 of 20)	61380.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	3.27462076845	3.41243940448593	3.09447472598915	3.25967033054324	3.41103348750423	3.28833673993667	0.203292466313625	0.749178089124923	0.93719392324485
Merged-chr17-28750224-2	chr17	28749724	28750724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19093.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	3.30712414484962	3.19467571074143	3.19180739896462	2.99505947666009	2.92349559013232	3.08863168550857	-1.06179215732202	0.107699430761893	0.438421801122875
Merged-chr1-155145293-2	chr1	155144793	155145793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1521.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	6.74291700743257	6.68868160165944	6.59964864556467	6.47090174322849	6.55870227830253	6.3856878626813	-0.32218112172823	0.216525172717402	0.610030018672362
Merged-chr1-80335276-4	chr1	80334751	80335751	+	850.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	5439.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	2.83555348750719	3.12252075887009	3.25550018930328	3.4004084708933	2.79315824779322	3.32736593054313	0.502034770247332	0.501639303814714	0.835833270717604
Merged-chr12-85522019-2	chr12	85521519	85522519	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48129.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	2.45780036267248	2.26073980114287	2.52616835780598	2.30246611046169	2.19382487763283	2.21590363460515	-1.24227751742411	0.156464557334546	1
Merged-chr6-113078585-4	chr6	113078064	113079064	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	925.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	7.69132829408378	7.92663098148516	7.72018643869092	8.01814090859296	8.40381590312466	8.02102443479023	0.541085434822032	0.0238605670880485	0.181562877573145
Merged-chr11-55013063-4	chr11	55012540	55013540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 3 of 24)	intron (NR_138556, intron 3 of 24)	20431.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	5.194307482116	5.10754496407264	4.71000626757161	4.93959104818539	4.69752478671171	4.85866600561315	-0.441134143535716	0.275904192394663	0.673297827984136
Merged-chr11-4536126-4	chr11	4535627	4536627	+	833.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	L1MB8|LINE|L1	58688.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	6.25741103291407	6.59205636947623	5.95589702034241	5.95382933365065	6.15195152489934	6.24236533705829	-0.315791235891589	0.323435696329418	0.71668986599242
Merged-chr18-82821666-4	chr18	82821159	82822159	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-34238.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	5.56999301539791	5.13784407657586	5.66715201736916	5.64050279687295	5.29773322037796	5.59859568135828	0.0844797191213775	0.81811403384347	0.956842917576288
Merged-chr16-4902562-4	chr16	4902072	4903072	+	818.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	16472.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	2.96848495734488	3.06738060367569	3.19368319529916	2.98515267604398	2.80879943467712	3.26444387491455	-0.229623647645785	0.742487006484867	0.935251730836429
Merged-chr6-86397723-4	chr6	86397193	86398193	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	-543.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	7.20436948284723	7.21166557550609	7.02500488340945	7.52895763874425	7.58181951118509	6.96916491156896	0.367689378045519	0.179348010458405	0.560853474677651
Merged-chr2-76071047-4	chr2	76070550	76071550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-89083.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	4.30332454154249	4.43355921923061	4.39930309312076	4.60569163806426	4.38738260541053	4.42313426465012	0.243252529899864	0.578032024069848	0.872300204193186
Merged-chr11-62554551-2	chr11	62554051	62555051	+	754.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	2820.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	4.26485611672859	4.54931161057446	4.59848693411807	4.48018786502128	4.40242229950521	4.58568225395623	0.0284195353779411	0.948530958164745	0.988151190239158
Merged-chr13-92483532-4	chr13	92483029	92484029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163627, intron 1 of 5)	B2_Mm2|SINE|B2	502.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	5.95458548709154	6.19618715010355	5.71464174140101	6.17748093254323	6.61861059605361	5.8069379106018	0.473719764474237	0.186247969512245	0.570803258887202
Merged-chr12-57464882-3	chr12	57464391	57465391	+	994.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81220.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	2.85454864406411	2.68954903776078	2.73247824941088	2.45236894280826	2.36706036872243	2.68280779221906	-1.57067561866356	0.0567995608973673	1
Merged-chr1-57394173-4	chr1	57393673	57394673	+	961.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 3 of 7)	intron (NM_001037742, intron 3 of 7)	-12375.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	3.6617324502697	3.64667086254149	3.90929480218157	3.65364438856255	3.67263605012526	3.78529792924038	-0.116967685571714	0.829015812328698	0.959932344512127
Merged-chr2-52922790-2	chr2	52922290	52923290	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	64922.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	2.8551165016207	2.90967104291978	3.0344184646319	2.84454272172845	2.9324672960466	3.37365956103866	0.599310319786848	0.402204398667016	0.77787096574423
Merged-chr8-108748835-2	chr8	108748335	108749335	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34191.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.02480139928645	5.63901724358368	5.5083241965108	5.29058452962585	5.1072990729527	5.69890243935098	-0.07413085869056	0.85402844891763	0.965896967163733
Merged-chr6-72103554-3	chr6	72103076	72104076	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	5968.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.46159426976162	5.51910587499544	5.89539001848987	5.86523052607215	5.99237156359615	6.08698491376215	0.641586243321498	0.0473333446528688	0.275574653083957
Merged-chr1-182520203-3	chr1	182519730	182520730	+	934.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2620.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.5035489840315	3.33607067019044	3.42844386378509	3.2560502498962	2.99123850679912	3.55111135611269	-0.572513480659355	0.385174953890383	0.766242799228034
Merged-chr7-73530057-2	chr7	73529557	73530557	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	11689.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	3.74556688074475	3.70446381071324	3.95672065226871	3.81604961099811	3.75430562800411	4.11395008475472	0.300716075528298	0.573100871440272	0.869947175774374
Merged-chr5-144963572-4	chr5	144963090	144964090	+	930.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	2240.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	4.13956069817692	3.52684881593602	3.98918623149575	3.76497852099255	3.58545526556388	3.96424358095276	-0.42743149643079	0.463232498947364	0.815725255489974
Merged-chr2-60282701-2	chr2	60282201	60283201	+	811.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1783.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	6.85415773964083	6.88812686383647	6.86210563508971	6.96543003393833	6.843688780792	6.94868401736941	0.0748135902501386	0.757849616313894	0.939957028913442
Merged-chr18-42259448-2	chr18	42258948	42259948	+	913.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	2623.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	3.26446380601969	3.39825829599093	3.23272180596489	3.13529251728101	3.21130309287362	3.18739402666556	-0.515918375169049	0.410305265994462	0.783163458863978
Merged-chr3-95654794-6	chr3	95654315	95655315	+	877.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3906.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.36739151759591	6.27718825616819	6.06985588408278	6.07789268346289	6.38717015785826	6.21858256119813	-0.0196244867363291	0.946442611863376	0.988002063841177
Merged-chr9-94537484-4	chr9	94537025	94538025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033145, exon 1 of 3)	exon (NM_001033145, exon 1 of 3)	556.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	6.36612781451722	6.42574002714415	6.4922678425412	6.45766241959636	6.15237349418884	6.46364229828685	-0.113246768363341	0.685229006297811	0.916203803074919
Merged-chr5-92375549-4	chr5	92375034	92376034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12238.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	7.62492432198718	7.65211896654653	7.47730461193272	7.8436464981153	8.05800732099215	7.71902644249115	0.427565312735758	0.0641966881568993	0.330124585030485
Merged-chr1-39614160-2	chr1	39613660	39614660	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36813.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	4.43955630033029	4.72645773962645	4.85563686019697	4.69972947058869	4.44347641428527	5.11361930051794	0.208570537123786	0.648452446498349	0.901813962130578
Merged-chr1-58742614-4	chr1	58742110	58743110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	12058.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.76321269419801	7.89904639139239	7.63305211605375	7.63658516080023	7.9831414686102	7.59310654147276	-0.0226607321277569	0.925700205478486	0.983266386206129
Merged-chr11-53795385-2	chr11	53794871	53795871	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24898.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	7.38459710321972	7.06378693758462	7.46738640280157	7.47406849317684	7.3148726341066	7.15528377746548	0.0200630209347267	0.937447987137276	0.986057836872162
Merged-chr11-102285540-2	chr11	102285040	102286040	+	981.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302505, exon 1 of 3)	5' UTR (NM_001302505, exon 1 of 3)	601.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	7.4261803592083	7.22162425720744	7.23899577980388	7.39889565528102	7.38820594778258	7.27279484647486	0.083380029861796	0.72073612466082	0.928324696220711
Merged-chr7-58844267-4	chr7	58843768	58844768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186066.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.19470994627516	3.03743237608694	3.04744734141317	2.82067991484156	3.08480623580135	2.8747254512148	-0.734462702171204	0.298696352587474	0.695427199902635
Merged-chr13-49271994-4	chr13	49271509	49272509	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23303.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	5.44671779490527	5.29511099501018	5.50643325827497	5.33202955282623	5.31376326100542	5.36504016508848	-0.153979278584821	0.648061280444605	0.90166178452027
Merged-chr2-91395888-3	chr2	91395384	91396384	+	774.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 2 of 8)	RMER19C|LTR|ERVK	48830.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	5.03390446837802	5.16320486993597	4.550965133736	4.40287506205709	4.43499738352425	4.38716548848931	-1.28598957763997	0.00367397499248758	0.0488423248402152
Merged-chr5-92341884-2	chr5	92341382	92342382	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	L1_Mus2|LINE|L1	7007.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	2.96265271002812	3.02191386577832	3.00267096027752	2.86785345772789	2.85668462193333	3.01601882156111	-0.407796059806754	0.549049353063695	0.860169049738739
Merged-chr5-105798499-4	chr5	105797986	105798986	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	L2c|LINE|L2	-78082.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.49972022026766	3.40803676469287	3.28973821377168	3.35391934765639	3.00534660241755	3.30422119585785	-0.72882656387567	0.25795081836061	0.655431765745382
Merged-chr1-44118872-4	chr1	44118326	44119326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	-53.0	NM_023645	72050.0	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	6.42234739063949	6.56389725027823	7.00043200907957	6.5161949606685	6.81604164161081	6.48904787977603	-0.0829030556546355	0.783022351008131	0.9468504131997
Merged-chr18-64515723-5	chr18	64515153	64516153	+	941.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 1 of 14)	intron (NM_001142950, intron 1 of 14)	904.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	6.58997849777393	6.87784975560123	6.37116829433563	6.25685259909757	6.80007774441679	6.35082501773867	-0.21366702458752	0.498424549119159	0.833865667012175
Merged-chr18-21701990-3	chr18	21701492	21702492	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49624.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	3.11984414566975	3.31449655596183	3.25025049840564	2.99847736747519	2.95365998482635	3.09243073962197	-0.980426324629565	0.136784155435506	0.494082942415973
Merged-chr9-63721755-4	chr9	63721281	63722281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	36213.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.12472728453438	3.06807524432473	2.82331111254191	3.43371198619754	2.75060666931411	3.09448804011087	0.491384137932915	0.523667836779928	0.848362770949337
Merged-chr19-12795631-4	chr19	12795142	12796142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361971)	promoter-TSS (NM_001361971)	481.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	8.73081363533505	8.59310091568664	8.6158276224952	8.59712787043759	8.52459302013293	8.5217691773182	-0.139034009537197	0.482946123791283	0.825899808213275
Merged-chr10-57747253-4	chr10	57746729	57747729	+	839.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-37694.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.17068217141571	6.19504150979178	5.94636610978645	5.49724045981099	5.55298384335371	5.52811870884645	-1.05615593897476	0.000602643435144695	0.0121909016678666
Merged-chr4-128962515-4	chr4	128962013	128963013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172875)	promoter-TSS (NM_172875)	-58.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	5.12803949314373	4.82835098229392	5.0066772076173	5.36357800219678	4.80833920173539	4.67675932413594	-0.0052712385157624	0.990205754398933	0.997748100752327
Merged-chr8-93917370-4	chr8	93916870	93917870	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	95270.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	2.86505514936136	3.33961940177065	3.14484962927715	2.9425607388504	2.71325769415738	3.32583670816804	-0.495705203320145	0.517481699298079	0.844584701172856
Merged-chr2-73314531-2	chr2	73314031	73315031	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355711, intron 1 of 3)	intron (NM_001355711, intron 1 of 3)	1879.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	4.31137590339299	3.9570503733879	3.87842328809527	3.90801190733774	4.00657713728658	4.52410422952962	0.278080117261189	0.610650031237785	0.885733148541533
Merged-chr8-66388883-4	chr8	66388378	66389378	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	2577.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	5.5116838649855	5.40945066478159	5.68964873630162	5.86088493140831	5.78552736001081	5.52956790586268	0.385632890187674	0.240368027942176	0.637435893658386
Merged-chr7-5065770-2	chr7	5065270	5066270	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	3627.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	3.66546094443454	3.67732245081305	3.89638452182621	3.72346685137809	3.72266180619965	3.91721995512093	0.138011153656589	0.796316920852799	0.951410019719943
Merged-chr12-101082479-1	chr12	101081979	101082979	+	674.0	f0_balb.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	28.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	6.65299442511491	7.17367440373936	7.09327786640246	6.98001834977227	7.04358129074576	6.95390268117885	0.00456332339399701	0.986593468464977	0.997063455776714
Merged-chr1-106037123-4	chr1	106036633	106037633	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	46727.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	2.53396151667396	2.55104630884483	2.28481188268214	2.58174072322624	2.38928303380519	2.62685925272142	0.405414354618443	0.631859751475593	1
Merged-chr16-94245590-4	chr16	94245090	94246090	+	859.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	44701.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	7.44766485566925	7.6728246389514	7.14081081394048	7.44627863492744	7.73973731893869	7.14546449277301	0.0442780059752917	0.875852738061262	0.971136321106511
Merged-chr8-117288124-4	chr8	117287620	117288620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	31101.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.01898541410773	5.81219200949155	5.95158349095555	5.28242667010213	5.44966234265851	5.61762739247569	-0.881714682458129	0.00646471311608727	0.0737578292833387
Merged-chr12-17765922-2	chr12	17765422	17766422	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	L1MA4|LINE|L1	75113.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.59759393023854	3.64141596388077	3.68257940179051	3.78254657781441	3.84018349543704	3.94935413456665	0.72369720532546	0.172025940563593	0.55057560520216
Merged-chr2-28402361-4	chr2	28401884	28402884	+	845.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45557.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	3.06681647353718	2.87752913066785	2.71083889098054	2.87541205247089	2.82137091400994	3.08862215515878	0.151057622237731	0.836884188640502	0.962001762335242
Merged-chr8-123038708-2	chr8	123038211	123039211	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	3573.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.30624954561904	2.87057363330442	2.90750982777917	3.3417204136819	3.23236407424533	3.2326719400447	0.933188352778709	0.186831578032802	0.571644859163574
Merged-chr4-132974153-4	chr4	132973694	132974694	+	932.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010208)	promoter-TSS (NM_010208)	99.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.29496865180737	6.31619723039233	6.19054350125464	6.32678133653959	6.48488775432106	6.51805540705092	0.282705149579015	0.298470804915424	0.695174900936234
Merged-chr19-40832509-3	chr19	40832014	40833014	+	993.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172839, intron 2 of 5)	MIR|SINE|MIR	1235.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	3.78445259184463	3.85901002000451	3.54669180278546	3.85823077347691	3.62933650012264	3.61941526478514	-0.12112212457284	0.828141359749521	0.959633697141491
Merged-chr9-107547256-4	chr9	107546718	107547718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053253)	promoter-TSS (NM_053253)	-92.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	3.49635937507427	3.40936170527066	3.48048684176382	3.4819143655438	3.53047519434936	3.49650527951473	0.15864259516054	0.781100632001506	0.946145838976425
Merged-chr12-98735544-3	chr12	98735041	98736041	+	961.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	-896.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	4.93702853386919	5.10479524438979	5.09092532696623	4.63012895513837	4.76849124996399	4.80113097559003	-0.690586727231017	0.0741631956086888	0.35823587485242
Merged-chr4-43259832-3	chr4	43259289	43260289	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-7370.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.63146459095066	5.58741610013947	5.72555758492262	3.91653756708517	3.81119458999432	4.43189249685021	-4.19733821141913	1.43884008805614e-15	4.38545809695881e-13
Merged-chr7-45129718-3	chr7	45129259	45130259	+	919.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1014.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	5.47828334480314	5.40434148712003	6.04398899989932	5.76103382037774	5.70924463857649	5.86483488313854	0.213100930694647	0.546748308592102	0.85898091530532
Merged-chr6-122939793-4	chr6	122939299	122940299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12716.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	6.51405018012162	6.55827505797437	6.27224195244446	6.23705191342289	6.10912207318422	6.42859754009429	-0.341939240811454	0.229740564124179	0.625429506286429
Merged-chr5-122885629-2	chr5	122885129	122886129	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 13 of 22)	B1_Mur3|SINE|Alu	14721.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	4.77561090618927	4.86727410809652	4.83010480352392	5.06517442344002	5.2427515404585	5.11238874061148	0.695056692279647	0.0619069902503801	0.323037554543687
Merged-chr2-91453436-3	chr2	91452916	91453916	+	824.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4115.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	2.72128489083798	2.81899760026895	2.81282535385499	2.53606274050056	2.70722128245267	2.76447181856493	-0.602749839285933	0.42070195738203	1
Merged-chr4-122922950-4	chr4	122922435	122923435	+	756.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36859.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	3.89979168666904	3.97445214676782	4.11692060941018	3.80673683076521	3.67344549799281	3.855809709618	-0.694748457716777	0.179028105916421	0.560358510272855
Merged-chr10-75507341-2	chr10	75506841	75507841	+	594.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347201, exon 6 of 6)	3' UTR (NM_001347201, exon 6 of 6)	10040.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	2.76654439277651	2.83954356332071	2.9778567154168	2.72991387557591	2.5178648016302	2.8763464764328	-0.795341980788517	0.295529539355739	0.692453872232269
Merged-chr18-67183249-1	chr18	67182749	67183749	+	626.0	f0_balb.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-22110.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	2.44784415588346	2.48850728090939	2.49078077292032	2.27544011576744	2.2452899663263	2.16521737350389	-1.69381604385804	0.057566793702063	1
Merged-chr17-35163592-2	chr17	35163092	35164092	+	777.5625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199044, intron 1 of 30)	intron (NM_001199044, intron 1 of 30)	1285.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	3.89364369181066	4.07607013329588	3.97362224298519	4.25783608789138	3.87724734594227	4.39922500210151	0.579565297971069	0.260741113522425	0.658224767876399
Merged-chr10-40126110-2	chr10	40125610	40126610	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	B1_Mur3|SINE|Alu	16144.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	7.15476749980237	7.46810994430636	7.12322147699959	7.38597678570594	7.97516032385013	7.19412060034551	0.459175292580701	0.126075906366909	0.474813253235168
Merged-chr9-110477996-2	chr9	110477496	110478496	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1002.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	3.02241812609308	2.96924683271009	3.16732066898929	2.91285869921026	2.82951035806524	2.82523986160221	-0.941679240883651	0.175725403435806	0.555774586970482
Merged-chr1-64919519-4	chr1	64919061	64920061	+	866.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37263.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.63015432750202	4.86020892656872	4.90682879981875	4.79394809553732	4.73400046220711	4.53861843855838	-0.231200858844571	0.57272171513461	0.869927050630548
Merged-chr12-100170493-4	chr12	100169992	100170992	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10839.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	4.64086827013065	4.62187006416968	4.88475469759056	4.82966764198382	4.88095360708629	4.72477290857865	0.247705139958923	0.536238848161531	0.85392789486322
Merged-chr1-171285531-3	chr1	171285054	171286054	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 3 of 13)	exon (NM_013919, exon 3 of 13)	2407.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	5.58476196937308	5.72329244729191	6.11239503215552	5.46446714181864	5.59008577881317	5.44625829326365	-0.567126288891998	0.0988852860957344	0.419360626745723
Merged-chr8-46472291-2	chr8	46471791	46472791	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007981, intron 1 of 20)	intron (NM_007981, intron 1 of 20)	1254.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	3.78214785990819	3.87570572905535	3.54470351745521	3.57072320332707	3.83220603094216	3.67298428426233	-0.154970740636655	0.782868703676288	0.946788452305116
Merged-chr6-83867190-4	chr6	83866686	83867686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35445.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	5.74547167428551	5.83308742941989	5.60651162993429	5.68020712607354	5.74399468838856	5.46028102340693	-0.17257564499857	0.592359788860478	0.878003422897225
Merged-chr2-30965063-2	chr2	30964563	30965563	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	B4|SINE|B4	2855.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	6.25489669452367	5.98478336336523	5.88836317295178	6.05631988770682	6.08161969831744	5.9987585112219	-0.019964153077083	0.94687934417832	0.988007649185823
Merged-chr19-21948236-2	chr19	21947754	21948754	+	836.599976	f0_c57.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	169914.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.10936079847771	3.14526547188623	3.07349317687233	3.18178133115402	3.35833499996459	3.26424138471041	0.681869400376374	0.282599032351925	0.680475178954131
Merged-chr11-60353107-4	chr11	60352605	60353605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-200.0	NM_001359810	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	7.18349499179117	7.33974741725922	6.49386560810357	7.17251195686142	7.05289588280724	6.40876272773518	-0.207597238440419	0.553073105973134	0.862070329440339
Merged-chr11-120713811-4	chr11	120713296	120714296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	12.0	NM_001347611	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	4.48626110964716	4.48681194551089	4.640672316968	4.39666497765141	4.4974589231665	4.41949296761384	-0.230915227974643	0.588998102648151	0.876716948268319
Merged-chr16-92705864-4	chr16	92705320	92706320	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-8491.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.83626011036691	4.75021653271896	4.79418895147982	4.50760096926374	4.61409814092029	4.53977051401616	-0.557526093643445	0.169042575433916	0.545661750425338
Merged-chr13-52981706-3	chr13	52981215	52982215	+	918.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	-676.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	4.68670051719609	4.6432096111887	5.01702204974357	4.95845686938367	4.39011587752435	4.56111307048084	-0.293142338164364	0.514352808331539	0.843107848235413
Merged-chr7-27199434-2	chr7	27198934	27199934	+	603.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	RLTR11A2|LTR|ERVK	-3163.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	5.2541153697324	5.33044216212644	5.77665980829305	5.12836010561856	5.01172046798132	5.7462231826702	-0.273611399382198	0.50890615588629	0.840113154094644
Merged-chr4-135352655-4	chr4	135352130	135353130	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 1 of 17)	CpG	584.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	8.04562489472907	8.19362722688086	7.85851562612694	7.9977230563643	7.90098504687564	7.81394896335955	-0.195035897827238	0.384807557840908	0.76593550394674
Merged-chr11-48771901-2	chr11	48771401	48772401	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28459.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	2.97844300290922	2.96337944464447	3.14265712659729	3.15865019312553	3.12139239891877	2.97727124738066	0.298902389547236	0.652818486363845	0.903027303548785
Merged-chr6-125008414-2	chr6	125007914	125008914	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252083)	promoter-TSS (NM_001252083)	-824.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	6.12621654542027	6.30926733499932	6.92380438932722	6.45266737778782	6.68133310250262	6.48866620304393	0.0945751351306786	0.77306625231498	0.943975121767824
Merged-chr17-26917924-1	chr17	26917424	26918424	+	1000.0	f1_balb.idr	intron (NM_053173, intron 1 of 10)	intron (NM_053173, intron 1 of 10)	833.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	2.90798116030694	2.92992170313222	3.02403508961709	2.99071065572447	3.2013589918229	3.26309623038894	0.938894144147485	0.161553562057955	0.534558746240837
Merged-chr12-73881670-4	chr12	73881170	73882170	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19654.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.99375988407396	5.23046593865956	5.62192163934643	5.43524381937043	5.34178817482675	5.47112483099639	0.235434372807556	0.52839866036278	0.85053360857083
Merged-chr1-74268956-2	chr1	74268456	74269456	+	754.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029711)	TTS (NM_029711)	-9644.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	2.74942948253978	2.95285237280174	3.06940092367979	2.66979237986502	2.91174404607622	3.02839373662572	-0.243822629820861	0.740318431370442	0.934509856785078
Merged-chr2-18056632-4	chr2	18056141	18057141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149308, intron 1 of 9)	CpG	913.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	7.09365331540383	7.07723868328208	7.09319846931519	7.28947602823345	7.00358237432172	6.74467771547973	-0.0735020873925541	0.780666202093868	0.946078518476608
Merged-chr11-89028048-4	chr11	89027550	89028550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	28647.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.90886382234805	7.05209535746484	7.10090541028403	7.56413912625169	7.91751064932198	7.38550327253356	0.934355713836251	0.000313048240754906	0.00721954490485983
Merged-chr6-30454088-2	chr6	30453588	30454588	+	979.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311087, exon 9 of 9)	3' UTR (NM_001311087, exon 9 of 9)	-6897.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	3.85734673454823	3.9245508887012	4.15349711085629	3.94715232036197	3.70381012464226	4.04233629776239	-0.247233259420073	0.636151431598837	0.897015562116185
Merged-chr17-50570853-2	chr17	50570353	50571353	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	URR1B|DNA|hAT-Charlie	61306.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.85626454397924	5.04057584303538	4.95553607975178	5.27114468832646	5.24589225779902	5.02127287730553	0.500468711934951	0.175875651033542	0.555900300080775
Merged-chr1-144312333-4	chr1	144311843	144312843	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63239.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.80351131736897	5.82027605579816	5.68556394096566	5.76941958477359	6.02542555811616	5.92587934073159	0.247414628474693	0.419144457993855	0.78883406136263
Merged-chr17-8164929-4	chr17	8164446	8165446	+	891.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-572.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	6.26656929331302	6.77817120487839	6.90824813401462	6.37940145149065	6.66671998655233	6.52578327971316	-0.225170124233928	0.461759018488507	0.815107818354545
Merged-chr10-19068505-4	chr10	19067995	19068995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53085.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.28396018936942	5.89210765961134	5.65244406207936	6.01465660912558	6.08859353040173	5.74470018776833	-0.0266849440035617	0.93744595773943	0.986057836872162
Merged-chr19-16780457-4	chr19	16779970	16780970	+	895.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	CpG	463.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	6.32732056043362	6.69276554146965	6.12499465158663	6.72397112561252	6.51976954507937	6.39944703495181	0.228060490895633	0.45285281994409	0.809457484278845
Merged-chr15-36648680-2	chr15	36648180	36649180	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39707.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.17818417927375	4.41612382031336	4.93261629236588	5.11762909768726	5.23320169666805	5.16187905992331	1.44548668888796	0.00122785751284113	0.0211439503163255
Merged-chr18-57878678-5	chr18	57878187	57879187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	9.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	6.18538824381226	5.97425397812564	5.80713656463369	5.9543535119094	5.54739465700985	5.76443175725713	-0.433573583255061	0.182858154280193	0.565791361793332
Merged-chr14-54464168-4	chr14	54463677	54464677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	30.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	7.60380890028234	7.87220654516144	7.67800479487194	7.68883167762401	7.81818267467139	7.67076707455448	0.00772254090749027	0.972809310704013	0.993881982649774
Merged-chr19-32179703-4	chr19	32179186	32180186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31327.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.01887434934036	4.92954592103778	4.36957775742635	4.0512845714653	4.24675512290624	4.08170167969504	-1.71745170122021	0.000481979451637067	0.0102177187800808
Merged-chr5-121252820-3	chr5	121252330	121253330	+	653.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	32611.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	4.59253947232475	4.62281920366951	4.58071706936721	4.60391163377568	4.92394464427606	4.51873811582548	0.257568768641212	0.544358079454006	0.85765692399006
Merged-chr17-65780346-2	chr17	65779846	65780846	+	686.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3009.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	2.80660776753346	2.63343473900227	2.74644547780285	2.87172004229271	2.70586508318346	2.99933143150406	0.659548142339537	0.368682133350195	0.753594740654151
Merged-chr2-166702333-2	chr2	166701833	166702833	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2|LINE|L2	11499.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.15233080868095	4.17473844865679	4.23202578440692	4.37479078009804	3.77662731186943	4.3430434076698	0.00342206448874773	0.994734138265822	0.998961028701257
Merged-chr9-107630141-3	chr9	107629685	107630685	+	689.277771	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	5157.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	5.20663101214674	5.71062430133766	5.87772109076039	5.5646530468941	5.37164463498262	5.75193787556917	-0.108778886132388	0.770367967184406	0.943392092118189
Merged-chr6-93758291-4	chr6	93757798	93758798	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 8 of 23)	Tigger7|DNA|TcMar-Tigger	154665.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	6.12684369470388	6.4324909831566	6.01012026627438	5.7809430596377	5.7885654168062	5.28645686817619	-0.971836620186067	0.00486798070622578	0.060132859056359
Merged-chr9-69398019-5	chr9	69397582	69398582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145618)	promoter-TSS (NM_145618)	84.0	NM_145618	93697.0	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	8.00848965255522	8.46329581415372	7.9221704077417	7.96095124173825	7.85090566421397	7.76882849435127	-0.42073205641769	0.0924199755717637	0.404971565240536
Merged-chr15-76196613-8	chr15	76196069	76197069	+	788.668762	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-859.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	2.91576789330947	3.0205182439068	2.99840270856259	3.13430627670986	2.82129029020137	3.24205579512204	0.421697895981891	0.544525285183999	0.857798684260618
Merged-chr6-52920881-4	chr6	52920393	52921393	+	858.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11273.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	6.09883890581349	6.09710751584951	6.11910388067222	5.91460685325922	6.26314264832007	6.09264609984873	0.00181031534672585	0.995087395044107	0.998961028701257
Merged-chr11-118157906-3	chr11	118157440	118158440	+	690.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28721.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.13473039790446	6.05334208441056	6.03873774166509	5.79208456777608	5.66421420306376	6.12058593149879	-0.383821827544725	0.216887523915549	0.610529941246584
Merged-chr10-98609610-4	chr10	98609119	98610119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-257752.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.65823383650883	4.56278556465717	4.57202138009331	4.37887059987561	4.52441404778456	4.67763064658828	-0.177195924601831	0.675096687312714	0.911995407960456
Merged-chr10-5806655-4	chr10	5806153	5807153	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	6.31315796055487	6.33087022230332	6.51938350535928	6.24416672010816	6.37662436312039	6.24316994797554	-0.147385786180106	0.592269603322812	0.878003422897225
Merged-chr17-28486192-4	chr17	28485676	28486676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010220)	promoter-TSS (NM_010220)	-27.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	5.03820940840346	4.7571582213145	4.75989148370867	4.85005448827043	4.60673689398643	4.78705023937774	-0.266457290660815	0.510831413571082	0.84113866701804
Merged-chr11-77519221-3	chr11	77518723	77519723	+	679.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	4106.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	4.73957617453258	4.89431289260369	5.28540295452073	4.67311793993055	4.6785679108686	5.23383659616535	-0.232059651900984	0.598866673207349	0.880844471295403
Merged-chr10-128345483-2	chr10	128344983	128345983	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7756.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	5.32592786874686	5.49627165992241	5.34672953397819	5.61147246010267	5.40278597085497	5.58546953079611	0.260113179392607	0.437484002788463	0.799977340541984
Merged-chr6-129533428-6	chr6	129532923	129533923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-139.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	8.49759533863319	8.74199693507517	8.19743738321594	8.31917255261508	8.53462530090406	7.86783729866209	-0.313379664346063	0.252154824059493	0.64970951645701
Merged-chr3-30917338-3	chr3	30916847	30917847	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165954, intron 11 of 14)	intron (NM_001165954, intron 11 of 14)	52068.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	3.01945401909163	2.85247769400429	2.70848118450546	3.06674066698547	3.24577599303521	3.04450035913976	1.17900373255034	0.106788414246888	0.436148351870371
Merged-chr13-113382984-4	chr13	113382485	113383485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	119859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.80847484662388	3.64524436747704	3.78609455280071	3.73576956808989	3.64756889913135	3.47466366862303	-0.399075914340726	0.472010131703291	0.820417342888691
Merged-chr2-173538737-4	chr2	173538209	173539209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16117.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	6.28878188217382	6.62659734744617	6.34500192044782	6.88596575376201	6.98278244868108	6.61126798087171	0.648176811087673	0.0211681744607952	0.16768483059157
Merged-chr14-63119722-4	chr14	63119233	63120233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-2729.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.01828285336259	6.97676823468439	7.12311618392859	6.80765189772496	6.82680630493683	6.46587125029343	-0.486708322132141	0.0626530355692684	0.325539371928505
Merged-chr8-106141494-2	chr8	106140994	106141994	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4520.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	4.2501459309502	4.12440770668111	4.37725392159874	4.31745530432851	3.98645884048953	4.52329777242342	0.0905531550353594	0.853394172491209	0.965672676480491
Merged-chr6-148579080-1	chr6	148578580	148579580	+	587.0	f0_balb.idr	Intergenic	Intergenic	35229.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	4.60057267731525	4.43230794988451	4.67078456799129	5.00762993418024	4.78788178146269	4.43391618256042	0.484496282626731	0.267895022438176	0.665075242857499
Merged-chr6-122990089-4	chr6	122989570	122990570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005860)	promoter-TSS (NM_001005860)	-297.0	NM_001005860	474145.0	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	5.21899999250589	5.46854802574304	5.3635259913742	5.23536122434829	5.17684069912837	5.13618963309362	-0.342267268395031	0.328168163099086	0.720352041691366
Merged-chr5-32881368-3	chr5	32880865	32881865	+	891.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 7 of 40)	RMER6D|LTR|ERVK	17644.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	4.98075178885101	4.93537673892972	4.93119937808031	3.77679793654849	3.46087015148049	3.9272562629228	-3.89349614415728	3.64485834898419e-11	5.30212191437547e-09
Merged-chr15-51877409-4	chr15	51876929	51877929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030132)	promoter-TSS (NM_030132)	-12.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	5.87846691754249	6.21484759109651	5.99438614307868	5.77502593960768	5.97536609739813	5.96279692639065	-0.230745662730261	0.452172208337764	0.809286173636239
Merged-chr8-3308507-4	chr8	3308005	3309005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-28888.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	5.78323657565196	5.80317169747891	6.14383279454758	5.61064686500633	5.9109275013288	5.80355204970175	-0.221643947383917	0.49238369966018	0.83104217378051
Merged-chr5-148486364-4	chr5	148485875	148486875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65298.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	7.82828328251608	7.79196322907997	7.26714763486083	7.33713903374947	7.47422030483291	6.94110716847604	-0.558092266857682	0.0506847344216754	0.286777030802228
Merged-chr2-167385594-3	chr2	167385128	167386128	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36082.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	2.89584515133772	2.65032314450007	2.77585169237732	3.08445951903653	2.89642563545424	3.15002415275055	1.29952092141766	0.0743043182842578	0.358566185037203
Merged-chr10-111782609-3	chr10	111782028	111783028	+	740.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	91848.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	3.55242507837554	3.53597544637085	3.7635991544044	3.47210901189563	3.23337077498208	3.5836336037224	-0.686803435666833	0.248907762900077	0.645870662882678
Merged-chr11-85312100-2	chr11	85311600	85312600	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	846.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	6.16026847089143	6.20723999640422	6.43735952084543	6.20345428452263	6.27562769905698	6.53058546083917	0.117455815755227	0.683419622849194	0.915436178593276
Merged-chr5-135150386-2	chr5	135149886	135150886	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013763, intron 1 of 6)	intron (NM_013763, intron 1 of 6)	675.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	4.86440678711119	5.10051691132672	4.46398043761757	5.12525035775947	5.25805265998477	5.0405903533162	0.634158205969948	0.133164722082437	0.488237008287004
Merged-chr4-6335803-4	chr4	6335299	6336299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-29881.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.64908403448727	4.26219496680736	4.3768579117669	4.40882103831965	4.65307754001504	4.40002932368144	0.144134503419273	0.7514601399555	0.937886504040509
Merged-chr14-72710598-3	chr14	72710093	72711093	+	916.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-590.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	6.80504407755758	6.90680109352885	6.96382759462842	6.73606411012959	6.75943517344421	6.64882609145749	-0.266168850888649	0.285193127606136	0.682789519834595
Merged-chr13-19854235-1	chr13	19853735	19854735	+	739.0	f0_balb.idr	Intergenic	Intergenic	-29978.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	4.00132980763833	3.89575373798617	3.47409189222366	3.362734000145	3.25032782458527	3.3021857562242	-1.91668928533638	0.00221116511393643	0.0333387171240142
Merged-chr3-116006374-2	chr3	116005874	116006874	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 2 of 10)	intron (NM_023214, intron 2 of 10)	1032.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	5.85366540600735	5.48915783984278	5.49965707698543	5.79880205881485	6.02516868076881	5.88803389729809	0.502554839987083	0.124455695918199	0.472065895334892
Merged-chr12-32292967-4	chr12	32292465	32293465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-84316.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	7.45981225398734	7.68355632256798	7.6755160321859	7.46380740687449	7.85142742639667	7.50357313139531	0.0254520733327857	0.917631675182865	0.981718564389729
Merged-chr7-19270235-2	chr7	19269735	19270735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1619.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	6.36240058254944	6.31660088457545	6.91525449941037	6.8950494205208	6.81607856912373	7.5621764623487	0.893079575932227	0.0082266070559054	0.0877926792237754
Merged-chr2-163645132-4	chr2	163644642	163645642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	1.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	8.54155901102254	8.41531411874108	8.17598910290982	8.21035347061677	8.50549456562444	8.01402990525641	-0.172511747468711	0.479637707194173	0.824363039494411
Merged-chr11-20103856-4	chr11	20103372	20104372	+	913.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	9079.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.97487438303794	4.992177263001	4.89413672950263	5.17093570976426	5.11421596356424	4.9973499325788	0.302675972975172	0.410120978227529	0.783116615634315
Merged-chr2-167962516-4	chr2	167962020	167963020	+	764.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.9584943192877	3.81426442352934	4.17131259246046	3.81847864059183	3.74945657545119	3.92042168244529	-0.482783281624779	0.353925688263191	0.741034414559363
Merged-chr7-81851803-3	chr7	81851314	81852314	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7187.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.10180674307928	4.23241643506715	4.29722534525185	4.01851413323882	4.1098835285345	4.48518707470327	0.000869691593583688	0.998574412454338	0.999739862491134
Merged-chr15-73147117-4	chr15	73146583	73147583	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37864.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	3.9609128058713	3.62993482709144	3.83050340751223	3.92419091346521	3.70970821778023	3.79791881467324	-0.00814567532657648	0.987912706742516	0.997263854458883
Merged-chr19-9898799-5	chr19	9898283	9899283	+	883.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	750.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.37459494119777	7.61267162126069	7.30979190159593	7.0569706044318	7.28228864137718	7.35600495771138	-0.308308663100782	0.211425208900298	0.603943450931238
Merged-chr6-124932143-4	chr6	124931685	124932685	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145385, intron 2 of 8)	intron (NM_145385, intron 2 of 8)	797.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	5.32074950794864	5.38091667638551	5.39824661841361	5.26810160562511	5.34354103901973	5.27591062638883	-0.130848814041055	0.698318982856754	0.920332843065367
Merged-chr13-98998141-3	chr13	98997642	98998642	+	821.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13577.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	5.52724916244768	5.74092846961103	5.91199979357825	5.42316558693813	5.79822942759097	5.24858939340842	-0.373601511122244	0.303208071747642	0.699862332768671
Merged-chr5-140505511-4	chr5	140505025	140506025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021528)	promoter-TSS (NM_021528)	-84.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	5.16688849937017	5.22139614876564	5.14999406750683	5.27377624174177	5.10921229189464	5.4010083572914	0.151953770329224	0.668633881029451	0.909302737152874
Merged-chr2-168154645-4	chr2	168154124	168155124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040327)	promoter-TSS (NR_040327)	-111.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	3.42208521596917	3.25840876261784	3.31566160623289	3.11456876190761	3.18893045201616	3.33110682600228	-0.508018350038276	0.415113054054211	0.786136540436176
Merged-chr17-33912120-2	chr17	33911620	33912620	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355704, intron 3 of 7)	intron (NM_001355704, intron 3 of 7)	2519.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	3.13994998642386	2.98740654397853	3.52838537978287	3.33274146049153	3.27655770502857	3.74094882931704	0.884552378297039	0.19309361643866	0.580267363879138
Merged-chr8-40294006-3	chr8	40293510	40294510	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7057.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	4.39279245215262	4.24960398897521	3.72236611649117	3.64067673042777	3.59533386146336	3.68024905608279	-1.66048904447732	0.00352633802091142	0.047425171172458
Merged-chr7-141170063-4	chr7	141169565	141170565	+	921.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	RMER5|LTR|ERV1	-1129.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	5.55144710051471	5.86067986359643	5.38391093930717	5.81308941798032	6.00293619824817	5.71787033496057	0.417886155639931	0.216703146471361	0.610242162298261
Merged-chr6-113120986-4	chr6	113120487	113121487	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173005, exon 13 of 21)	exon (NM_173005, exon 13 of 21)	16052.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	4.30460055049627	4.17886535050196	4.47883172014693	3.92628332099123	4.03961190302493	4.16611470988505	-0.773781498337925	0.107956682380866	0.43885190422332
Merged-chr16-5256039-4	chr16	5255518	5256518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027446)	promoter-TSS (NM_027446)	-62.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	7.03163795967984	7.14761792030037	6.92210470314741	6.9569782930714	6.919000788588	6.66713049890938	-0.276286353193487	0.27705489579586	0.674343034039447
Merged-chr15-95828940-4	chr15	95828451	95829451	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1121.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	6.39380189557775	5.81652483719978	5.97339506461568	6.24231410557243	5.79014160709461	5.60554707954124	-0.304208824233104	0.398619051680942	0.775273667788888
Merged-chr15-6278740-4	chr15	6278250	6279250	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21039.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.07540966193794	4.12258761549103	3.75520594194472	3.90115557980819	3.84202518090925	3.82694613542628	-0.447892654516222	0.390075512647475	0.769460984694209
Merged-chr19-16084490-4	chr19	16083992	16084992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48339.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.28105809762637	7.44640411536585	7.18572084853466	7.42676398851159	7.75192407234967	7.60921859078398	0.427857911094119	0.0768013667507016	0.365129691660795
Merged-chr4-62662649-2	chr4	62662149	62663149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11325.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.29895070270651	6.07674792123937	6.14752580099177	6.28802496779894	6.32992602605011	6.40638403538711	0.267186747762244	0.337534379947086	0.727414835127997
Merged-chr6-124686782-2	chr6	124686282	124687282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	B2_Mm2|SINE|B2	23678.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	2.99004731591674	2.67028414038848	2.84739974963024	2.86484681549237	2.74158591918982	2.92049050690124	-0.011198782424052	0.987719375007865	0.997223245230291
Merged-chr3-27278361-1	chr3	27277861	27278861	+	697.0	f0_balb.idr	Intergenic	Intergenic	-38716.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	3.96044513990468	3.94539987753218	3.97430478737329	4.00082873914537	3.57124984766426	3.79193706316697	-0.514325007264072	0.336603872941305	0.726578163839891
Merged-chr15-81836165-3	chr15	81835663	81836663	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22163.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.61852104872727	7.6074661592786	7.41298474411348	7.87063018187165	7.85505876709122	7.4370290277065	0.274870290625582	0.263120320136541	0.661082058032528
Merged-chr8-122612421-1	chr8	122611921	122612921	+	553.0	f1_balb.idr	promoter-TSS (NM_016722)	promoter-TSS (NM_016722)	795.0	NM_021502	59005.0	Mm.38746	NM_021502	ENSMUSG00000015013	Trappc2l	1810017G16Rik|AB030200|Hspc176|Tca17	trafficking protein particle complex 2-like	protein-coding	4.55769507427149	5.00887561806223	4.74285041302325	5.06150046544627	5.30360369745007	5.17334191823581	0.85342153358579	0.0332821908593133	0.222580335719478
Merged-chr2-32151452-3	chr2	32150950	32151950	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	CpG	302.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	5.57069418730824	5.26966226838179	5.28891038433614	5.37059151179511	5.23427329007339	5.03949241467988	-0.317975178342055	0.379468447029071	0.761896589033286
Merged-chr4-19869009-2	chr4	19868509	19869509	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	50282.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	5.8022281686794	5.90025641356191	5.99567802892883	5.01600055873443	5.21862547126399	5.19900907094484	-1.42760644008923	2.2939032122823e-05	0.000822720252101663
Merged-chr11-76628817-4	chr11	76628336	76629336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43634.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	6.95392234731846	6.91045805008379	6.88395155555051	7.24236649462556	7.20259034164838	7.21757675234642	0.458088146427297	0.0505015816261785	0.286112589633762
Merged-chr5-140738454-3	chr5	140737981	140738981	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	B4A|SINE|B4	14354.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	4.69455111078352	4.71745804163212	4.55599560590004	4.36428512010921	4.63449739425402	4.25732997672393	-0.535409348856639	0.228298945177008	0.62336085286764
Merged-chr6-88384465-2	chr6	88383965	88384965	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	62074.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	4.7862490424273	4.61023543568366	4.47569743454717	4.11497832763732	4.4619445992215	4.41202822983984	-0.736150959486475	0.105013258305076	0.432336014895291
Merged-chr7-80753901-1	chr7	80753401	80754401	+	944.0	f1_c57bl6.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49430.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.27633664303929	6.28132970201022	6.08758019675754	5.69043384515027	5.7601368895624	5.78895912764508	-0.833804846287075	0.00457470849865027	0.0575351065023195
Merged-chr19-26607967-3	chr19	26607447	26608447	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	intron (NM_011416, intron 1 of 32)	2787.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.99760733951097	4.61079975918715	4.59277760632512	4.48235830414484	4.3654231432273	4.14173002696947	-1.00516822429918	0.0288262127569601	0.203667429363804
Merged-chr11-44417616-4	chr11	44417126	44418126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17563.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.48345624328023	5.1803732898022	5.13920322416025	5.44148336934392	5.34100453038945	5.36873902386255	0.195372931693352	0.579797165735448	0.872634190673987
Merged-chr17-46641280-3	chr17	46640788	46641788	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 3 of 15)	intron (NM_001357130, intron 3 of 15)	4792.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	3.7196076953241	3.7588881543819	3.94215261276495	4.01578318480809	3.78350770723813	4.14683511722262	0.552718303046604	0.292494005508255	0.6896822727195
Merged-chr12-36031144-1	chr12	36030644	36031644	+	713.0	f1_balb.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	11334.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	4.54113440741598	4.82812132497883	5.05743738440864	3.91087863383857	3.8481016937592	4.08424731172073	-2.39176150640524	1.57709320887176e-06	8.06333010602912e-05
Merged-chr11-94676047-2	chr11	94675547	94676547	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145828, intron 1 of 10)	intron (NM_145828, intron 1 of 10)	1446.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	2.85313754541191	2.87661375584222	2.97104129517829	2.98387596006641	2.87758409792178	3.37131363121565	0.864869941809896	0.221925466060608	0.616788023295903
Merged-chr6-129407486-4	chr6	129406985	129407985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	7.35618159469202	7.19265521737959	7.12951618247864	7.20128613659275	7.29330613124799	7.14920767163434	-0.0205909592961838	0.930843396643489	0.984700882920928
Merged-chr11-6627980-4	chr11	6627453	6628453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1886.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	5.72209310997694	5.44330923997777	6.17173869368424	6.2022846423837	6.62047971155826	6.29121757505937	1.00635116212131	0.00359483914324064	0.0481131374345773
Merged-chr8-43415498-2	chr8	43414998	43415998	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-108489.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	3.93361135715068	4.094727298846	3.51504570673893	4.26840074961761	4.38840570481709	3.89527944250563	1.00184151687031	0.336892169782746	0.726861060604748
Merged-chr5-21113700-6	chr5	21113227	21114227	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-57816.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.21871308374683	3.88954337091229	3.91092614889977	4.50311779897552	4.0524564034707	4.27638300354737	0.74592230481698	0.144941463112189	0.507831616184637
Merged-chr14-25493722-4	chr14	25493240	25494240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34555.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.24611537186225	4.92528554950124	4.81253284190338	4.52637465116443	4.66024604791728	4.40113178502145	-1.07961853406832	0.0114738894638567	0.110794869967343
Merged-chr2-3719627-3	chr2	3719140	3720140	+	885.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	L1_Mus3|LINE|L1	6182.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.01067420936153	3.16664969306571	3.11050142337639	3.12787366731224	2.87807961117475	2.80955864012721	-0.690974439753903	0.324071177311264	0.717287790132387
Merged-chr6-120185167-2	chr6	120184667	120185667	+	893.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	B1F1|SINE|Alu	-8656.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	2.82262980240254	2.58474747919061	3.0412904525008	2.5892200899998	2.65850012506859	2.70586749102066	-0.915381765401722	0.237504515046838	0.633934550844206
Merged-chr10-71285277-4	chr10	71284783	71285783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145420)	promoter-TSS (NM_145420)	-21.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	4.44174490184724	4.34823099219066	4.63258643874397	4.0415343602207	3.76322521628364	4.25851629351243	-1.25253872083299	0.0122357794845783	0.115800129589717
Merged-chr8-83666681-3	chr8	83666171	83667171	+	971.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013641)	promoter-TSS (NM_013641)	27.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	2.29784977126729	2.18701263180933	2.7387023916084	2.58449521454397	2.37424516465179	2.7538786488733	0.863258208293891	0.341826404346461	1
Merged-chr4-33244108-4	chr4	33243572	33244572	+	883.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	4715.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.69213712892868	4.31100327720884	4.92933191744903	4.98811890079274	4.37304750644348	5.02624999331583	0.368642959891195	0.444801967246564	0.804512062173139
Merged-chr15-5416223-4	chr15	5415716	5416716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80102.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.37828137470512	6.60803876194867	6.25236147976629	6.85404765478815	6.94693528518898	6.58624335026616	0.606030001701232	0.0307777236206176	0.212192627974509
Merged-chr6-97478527-1	chr6	97478027	97479027	+	656.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9293.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.97306756808609	7.77437030455803	7.64203835295199	8.20121308967726	8.08110761140984	7.86774791427125	0.359248157583189	0.124667806885466	0.472306664538883
Merged-chr6-50304101-2	chr6	50303601	50304601	+	695.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-42332.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	6.20688962282185	6.36117006715056	6.38898697535594	6.30741903517661	6.72911984948787	6.4111556934968	0.304980516381337	0.29000674437691	0.687705012571289
Merged-chr2-152741314-2	chr2	152740806	152741806	+	929.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	5055.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	5.66207794064013	5.94146520715728	5.53853877297861	5.86703180575716	5.81567904414076	5.82185964841649	0.176033694714751	0.582433464102881	0.87374470272009
Merged-chr7-120149747-2	chr7	120149247	120150247	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	3.28278270280874	3.53676263411748	3.61894250378823	3.47313625116159	3.49904490986153	3.73764480929128	0.312419941537697	0.596940641064299	0.88011264230803
Merged-chr11-116433950-4	chr11	116433415	116434415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-179.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	6.89869240624091	6.7176975765519	6.45236846668983	6.99395752622732	7.20838682550526	6.74551358451081	0.454124230817691	0.109299105282141	0.441756599874941
Merged-chr17-69225656-2	chr17	69225156	69226156	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	51550.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	5.90843231789464	6.03907008525384	6.08007661091308	6.32707816768999	6.51449045245408	6.36576277274631	0.675571831705433	0.016208233417268	0.140061759911106
Merged-chr2-35197520-2	chr2	35197020	35198020	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	B1_Mus2|SINE|Alu	3600.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	4.41562693660468	4.80297186974743	5.00774153045689	4.8501113118664	4.67906286446957	5.03885776214158	0.225500712495238	0.604263446284618	0.883017336250368
Merged-chr7-101936124-4	chr7	101935623	101936623	+	960.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-2266.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	4.38158332578012	4.01936442642783	4.42666312762028	3.9466847900199	4.47368198644605	4.41084148050543	0.0438735288234525	0.931266588822409	0.984851910381307
Merged-chr12-35037091-2	chr12	35036591	35037591	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-10098.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.01100053294306	4.83260646702531	5.03882422017428	4.6079143138478	4.43687902205834	4.86319343146998	-0.75142438347775	0.0684661098847739	0.34224006195436
Merged-chr8-111033789-4	chr8	111033311	111034311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146217)	promoter-TSS (NM_146217)	-31.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	7.89918938712444	8.19156959763884	7.67534894368872	8.0236527183684	8.19651370843511	7.64472626248094	0.0524129734404595	0.844605734886639	0.96373428957366
Merged-chr6-134897505-3	chr6	134897034	134898034	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029441)	promoter-TSS (NR_029441)	291.0	NM_001167695	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	6.18513543884055	6.28588398384252	6.51707041250564	6.4857280816321	6.68480253949884	6.80919258146979	0.542279742141187	0.0521922381841898	0.291977700656732
Merged-chr4-148159215-2	chr4	148158715	148159715	+	547.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104375)	promoter-TSS (NR_104375)	374.0	NM_001161851	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	4.6243419119427	4.29928491002256	4.09969372413358	4.25363781742721	4.25876886554105	4.0129159626379	-0.485203819433716	0.327362437686939	0.719528058616764
Merged-chr16-33966973-4	chr16	33966490	33967490	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	48.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.31148700577789	7.39795397835068	7.24644978623701	7.1920131947338	7.21844353149594	6.92134178000993	-0.294307581766971	0.225207797954129	0.620063864646258
Merged-chr5-31614799-2	chr5	31614299	31615299	+	864.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025796, intron 2 of 3)	Tigger5b|DNA|TcMar-Tigger	848.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	4.31569815809202	4.33283580930043	4.47252835762879	4.5445999251186	4.33036474949653	4.45556739886447	0.187907265486028	0.668818239647626	0.909385924601941
Merged-chr14-70402600-4	chr14	70402086	70403086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021308, intron 10 of 22)	B3A|SINE|B2	26508.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	6.1399093933953	5.91262610980919	5.64880836266563	5.51611912324573	5.65468478903823	5.71157627584221	-0.538995825359516	0.100050889639045	0.421883870931215
Merged-chr15-80233966-4	chr15	80233461	80234461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178719)	promoter-TSS (NM_178719)	-119.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	7.01834776495284	7.12422527546302	7.03346224935337	7.13275899878399	7.30552374215551	6.74862431950416	0.0537692337928331	0.840665733390518	0.962819298477451
Merged-chr17-74880589-2	chr17	74880089	74881089	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124940.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	3.91466745220058	4.01662673765493	3.86462250926241	4.46408217635113	4.3474328395381	4.32917370036608	1.24860434483744	0.00916824252224787	0.0947783729396448
Merged-chr9-44586789-1	chr9	44586289	44587289	+	586.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-18103.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	2.51357776818002	2.60439090163886	2.5789736338192	2.66685022347259	2.49740209397768	2.71505946840775	0.336901221900189	0.660863475359436	1
Merged-chr1-55406777-4	chr1	55406272	55407272	+	784.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	826.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.8259008411697	5.23003775050485	5.07953246840206	4.73351758163543	4.59311088484564	4.74710773927775	-0.827878767559509	0.039428698808866	0.24660042235473
Merged-chr4-149076159-4	chr4	149075712	149076712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 1 of 8)	intron (NM_019781, intron 1 of 8)	23600.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	3.26694512695597	3.12886937803174	2.93177840449075	3.15080815210855	2.8498553956563	3.24591259458763	-0.138500703835858	0.843977816941448	0.963698950090763
Merged-chr11-116807316-1	chr11	116806816	116807816	+	910.3333130000001	f0_balb.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20730.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	3.83182424959901	3.72507200208715	4.0475492168921	3.06239267573136	2.8032731446671	3.12897908665002	-4.65898772461043	1.1876363620212e-06	6.30234989866453e-05
Merged-chr10-24634449-4	chr10	24633946	24634946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39004.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	8.22630227760125	8.31948971797669	7.9978231071959	8.02151385219959	8.37361934992323	7.62398546240324	-0.194223186926145	0.475314005263686	0.821884993037983
Merged-chr11-83068538-2	chr11	83068038	83069038	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	B3|SINE|B2	3426.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	4.42500707744149	4.27411868800385	4.69121154573584	4.58645656280767	4.4475177363575	4.96164001236219	0.504364856239682	0.270697327846086	0.667699746707093
Merged-chr12-21414444-2	chr12	21413944	21414944	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 1 of 4)	intron (NM_011739, intron 1 of 4)	2992.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	2.80716893869431	2.93444618389935	3.11747008491779	3.05374111257134	2.98175100839503	3.24360192305994	0.636260137223669	0.354683634810162	0.741838331331706
Merged-chr6-83831864-4	chr6	83831360	83832360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146169)	promoter-TSS (NM_146169)	-119.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	5.32383750684203	5.30313873323089	5.41733068251196	5.40601932548532	5.35993459258023	5.39093823062342	0.0788485153928143	0.813467941464782	0.955940138311315
Merged-chr17-62544408-4	chr17	62543917	62544917	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	336900.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	3.98857329241076	3.91769100139714	3.99746065442506	4.38176453464787	4.5332871905801	4.30776588731401	1.26113439180481	0.00732430257437488	0.080806227606548
Merged-chr9-47587965-2	chr9	47587482	47588482	+	725.833374	f0_balb.idr|f1_balb.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	57630.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.78093152309042	5.86335196877853	5.81039223335051	4.4303158127491	3.86547434055863	4.36588968832808	-3.83892264992254	5.10142506239921e-16	1.70473645217716e-13
Merged-chr10-83637525-4	chr10	83637018	83638018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	11146.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	6.74927532080814	6.79423048454037	6.64119466544149	6.69051559916503	6.68876045536554	6.50731838021829	-0.151889519857639	0.554340235957749	0.862772480520227
Merged-chr6-122591576-1	chr6	122591076	122592076	+	544.0	f0_balb.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	10868.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.24209672815806	4.6390095180171	5.03217985264872	4.91998379970097	4.94486667579798	5.24750003801494	0.832130466022218	0.0690992032872772	0.34395473619309
Merged-chr13-101736218-4	chr13	101735728	101736728	+	779.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	31989.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.80536757889628	5.47769506301268	5.74816710626044	5.76395614566285	5.71530023032193	5.37748285103273	-0.0762759870085313	0.822036480525397	0.958041123079214
Merged-chr5-110769587-2	chr5	110769087	110770087	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029337, intron 1 of 51)	B1F|SINE|Alu	1130.0	NM_029337	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	5.17753913887718	5.61972683202353	5.51349234481312	5.68750259089954	5.54597705214699	5.76137821023006	0.398801419545868	0.248424172076304	0.645533060591377
Merged-chr15-79440581-5	chr15	79440081	79441081	+	914.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	1237.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	3.88130438389307	3.80443878749904	3.90946646348925	3.69244451723241	3.54537036585871	3.50385371213395	-0.943248074528876	0.0845456129005113	0.384991708483533
Merged-chr10-3973118-4	chr10	3972616	3973616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	41.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	6.01902062770515	6.21100827560945	6.01824566377218	5.80655955382203	5.96494505500982	5.51779693103249	-0.520169989391677	0.103159926214371	0.428296315983601
Merged-chr19-34519415-4	chr19	34518913	34519913	+	926.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8061.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.93823334343431	6.95543540079984	7.05749833424763	7.05791818880987	7.0928772012976	7.02372430085966	0.121525765719122	0.608777490879157	0.88502442296849
Merged-chr18-4948166-4	chr18	4947644	4948644	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98445.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	4.0436038675275	4.07920387450917	4.37944418400715	4.27389136162718	3.98431625736352	4.14428582145579	-0.0890129169053113	0.856046876353447	0.966367044561961
Merged-chr18-69666395-4	chr18	69665876	69666876	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-259183.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	6.01983403521923	6.09496571801206	5.76046862873689	6.03495650116886	6.00723657644685	6.04509884143357	0.0868189969309487	0.771432167101422	0.943614978016208
Merged-chr4-83235643-3	chr4	83235167	83236167	+	747.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	88522.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.83476776486614	4.47399016733605	4.58028992448948	5.28498223061244	5.08100543056209	4.85771713399873	0.997801403630477	0.0160502762130959	0.139148355564912
Merged-chr15-30610201-1	chr15	30609701	30610701	+	784.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	L1MD2|LINE|L1	-428925.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	5.24895337676337	5.28970593283218	5.17529468149198	5.54522319128762	5.46641696617134	5.62964419413462	0.58458134457774	0.0817393266535718	0.37821821732895
Merged-chr13-34794010-4	chr13	34793531	34794531	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	54389.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	6.28931223718199	6.15644895247729	6.18930065398532	5.83738483428053	5.9951136032682	5.96286884045666	-0.477828964811148	0.097180714943088	0.415658112932275
Merged-chr1-165612912-1	chr1	165612412	165613412	+	543.0	f0_balb.idr	intron (NM_001083897, intron 1 of 5)	RLTR19-int|LTR|ERVK	21629.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.78113963920811	4.01798681830429	3.90836710729931	3.57539648221078	3.58330301836158	3.83076564458394	-0.8115207166493	0.134225411044265	0.489938059403896
Merged-chr19-56655406-2	chr19	56654906	56655906	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66966.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.85261237046546	4.99816374384097	4.84288117705055	5.49643032269427	5.70426715486832	5.43198771947926	1.32170840119961	0.000238438484158206	0.00577247290946641
Merged-chr11-94317734-3	chr11	94317261	94318261	+	615.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361574, intron 1 of 9)	B3|SINE|B2	4202.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	5.47705418106323	5.71459771839451	5.42524284016898	5.4660078537489	5.95627302271857	5.63587958211606	0.298470782406113	0.392139054338166	0.770936216924513
Merged-chr2-148488274-3	chr2	148487821	148488821	+	697.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-44786.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.69430510291209	6.06915504454527	5.65041417048682	5.86375656002908	5.6108903754898	5.71310948905741	-0.176086529389461	0.594674881569149	0.879221513275036
Merged-chr17-71093301-4	chr17	71092787	71093787	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	73730.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	5.6892586862683	5.59550883554958	5.01073327073054	5.05162867295312	5.31960669779345	5.53698687189438	-0.317954782413415	0.424299045393786	0.792606581710395
Merged-chr10-41451018-2	chr10	41450518	41451518	+	924.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_102360, intron 1 of 6)	intron (NR_102360, intron 1 of 6)	660.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	6.58841300879989	6.92599328423525	6.39793804571953	6.85473589257403	6.69415365331249	6.45812571748027	0.0280123574324531	0.924189269722221	0.982917919313605
Merged-chr15-50109034-3	chr15	50108472	50109472	+	979.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	780077.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.97194739499602	2.89459084864256	3.12348674421305	3.43469850684305	3.35937674081296	3.77316497865123	2.30764628137179	0.000781577273808428	0.0149125158906333
Merged-chr2-165886958-2	chr2	165886458	165887458	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.07768418672252	4.78041658513296	5.01337124735252	4.98195836761524	4.94916252924332	5.44102869173567	0.361355653066696	0.366899506803292	0.751972999808775
Merged-chr2-155726524-1	chr2	155726024	155727024	+	630.0	f1_c57bl6.idr	intron (NM_145537, intron 3 of 10)	intron (NM_145537, intron 3 of 10)	2951.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	2.06218499876515	2.03645039168797	1.97035813249893	2.19299412476911	2.20900594885481	2.38154455720338	1.78744437442074	0.0590892012881713	1
Merged-chr19-45783661-4	chr19	45783171	45784171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-118.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	7.13604527061146	7.02518952125059	6.9658892276035	7.15407266223387	7.01810144666473	7.05100980513034	0.0409863691055211	0.864297725760744	0.968269312109804
Merged-chr15-6411553-4	chr15	6411053	6412053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	24805.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.59925027109903	6.61244996700449	6.13639185237903	6.25517081145713	6.24348091837383	6.15228786499572	-0.426901474149469	0.146594765207098	0.510783248139954
Merged-chr12-69502545-3	chr12	69502037	69503037	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26987.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.82600065062633	7.86065102603822	7.6329421783934	7.53115640742276	7.79174499306844	6.85919549747268	-0.454383850665756	0.13475920787857	0.490659614455871
Merged-chr19-6665499-4	chr19	6665005	6666005	+	830.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-122435.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.74899218446103	3.38643976243393	3.6216664827323	3.59048973881948	3.29246049747218	3.53232588353819	-0.435848491164034	0.467363273275468	0.817936383851132
Merged-chr6-50255041-4	chr6	50254539	50255539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 1 of 9)	intron (NM_018769, intron 1 of 9)	6730.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	6.31713146048836	6.31517453730377	6.15445526524642	5.75367791718968	5.85177978682385	6.10858726575938	-0.627498494774758	0.0341613757139414	0.226169617314261
Merged-chr11-73093099-4	chr11	73092589	73093589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	2494.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	5.44280095809665	5.30180887537429	4.97774236220446	4.51262337889503	4.45547013376733	4.81745408631964	-1.49913674473912	0.000255358645178602	0.00611449845986219
Merged-chr16-91874356-2	chr16	91873856	91874856	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	57274.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.12444069865572	3.17043303695492	3.16339133713574	3.42741113429251	3.28075782951457	3.66542325313893	1.23382979381978	0.051137331047686	0.288222925002768
Merged-chr18-60749777-2	chr18	60749277	60750277	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.05512078000836	4.97696350159196	5.18079486437566	4.85312701955722	4.82154438475148	4.74853687490214	-0.561180695763307	0.139799905497281	0.499590729110879
Merged-chr1-131092862-2	chr1	131092362	131093362	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	4981.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.68324666101494	4.49638693655863	4.57697915021719	4.74583551541019	4.67153476187239	5.04392580896543	0.540280090224776	0.195291011771619	0.582993380959812
Merged-chr11-98850422-2	chr11	98849922	98850922	+	707.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 13 of 15)	exon (NM_001080925, exon 13 of 15)	-13176.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	3.519572612177	3.55701200808125	3.58899292870907	3.36963683081929	3.58029556811426	3.70943501999496	0.0114138825419987	0.984105559460206	0.996464361754829
Merged-chr19-47406700-4	chr19	47406181	47407181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	ID_B1|SINE|B4	57730.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.38025545072726	5.33070018881659	5.24858537892494	5.66231102506195	5.43280790619805	5.34588120134492	0.321277279642506	0.346899281248904	0.735071696907375
Merged-chr5-115484431-4	chr5	115483916	115484916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167691)	promoter-TSS (NM_001167691)	68.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	6.8882618098351	6.87947470525787	6.96985378832113	6.83009354955392	7.18731822551272	7.00089440572899	0.168369971702492	0.506939973424707	0.838664333321198
Merged-chr5-32744268-1	chr5	32743768	32744768	+	595.0	f1_c57bl6.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	2074.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	5.89297803046614	5.78630286483188	5.56783422549629	5.69672919572955	5.71094241689227	5.63092815481593	-0.150765151551149	0.634161180211071	0.896306748317281
Merged-chr13-24104208-4	chr13	24103725	24104725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-113011.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	5.48389744774475	5.17516371888619	5.2215851940936	5.27888274977617	5.1820708603557	5.04148380014022	-0.260354600058081	0.472547270110363	0.820550293768681
Merged-chr18-75305388-2	chr18	75304888	75305888	+	970.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8059.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.25338847370406	4.42167226829932	4.47206452347489	3.98721187358805	4.20621902461492	4.72299281477483	-0.129557651718462	0.797186678949032	0.951678829711438
Merged-chr6-92287116-4	chr6	92286608	92287608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42458.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	2.55440301707477	2.40703915499921	2.70745566495359	2.95822439570737	2.95569198819238	2.90630423703054	2.23060918775524	0.00606043845969316	0.0702727094975123
Merged-chr7-101348535-2	chr7	101348035	101349035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	466.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.49381743982893	5.39044142821953	5.53215281126365	5.65255113379067	5.38003106230575	5.4192121096325	0.0365645717379691	0.912988205201271	0.980521208172103
Merged-chr19-9979561-2	chr19	9979061	9980061	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.33420919093497	6.33858946380766	6.34496099710499	5.87738402295239	6.00909480034165	5.85819551857211	-0.705655453469971	0.0130519197578128	0.121248647896404
Merged-chr14-32783245-4	chr14	32782745	32783745	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2718.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	4.51246560661185	4.80281941081665	4.74703407102932	4.89516803208325	4.86715324904752	4.47385296268985	0.178308910261937	0.676217813369499	0.912421384593547
Merged-chr6-123227732-4	chr6	123227225	123228225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2118.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	7.2416271731299	6.86603436765139	6.79765168665952	6.84383390318084	6.98825135276697	6.7777523417198	-0.172221497911211	0.523836794311344	0.848428438699863
Merged-chr1-144307206-4	chr1	144306709	144307709	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58105.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.96729027335926	6.11549220159814	5.79364653094775	5.75504361210028	5.76478403598154	5.66628331249239	-0.429396920903808	0.163805616579894	0.537798828885102
Merged-chr11-102318838-4	chr11	102318322	102319322	+	743.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 1 of 20)	CpG-2669	274.0	NM_001302955	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	6.99679366674362	7.3280788841865	7.37194548997955	6.92547722315965	7.31373176932033	7.46942545996372	0.0204785926738818	0.940638939712286	0.986881313555047
Merged-chr11-117727326-4	chr11	117726821	117727821	+	948.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	52327.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	5.05131706755425	5.18420857137171	4.80182435054626	5.23426626165416	5.32205304534661	5.26849636158343	0.497968379866604	0.178772178802937	0.560105258446976
Merged-chr16-85801404-3	chr16	85800922	85801922	+	984.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	1691.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	4.38639953737411	4.01125066266371	3.66293686925044	3.33557977525697	3.27809360946676	3.23392221706135	-2.87182853837236	2.1627873804945e-05	0.000779727956482608
Merged-chr1-151572868-4	chr1	151572416	151573416	+	817.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	Lx4A|LINE|L1	1543.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.48359240986184	5.9879145413316	6.32497199567732	6.63826044554514	6.56580880239755	6.30502837081257	0.385259049687608	0.201409919293145	0.590984054786189
Merged-chr11-94995009-2	chr11	94994509	94995509	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3797.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	3.9775698325532	4.18160104186834	4.19646109498244	4.00239438177216	4.04299815929475	4.34713037623881	0.0329413677372411	0.94648551265643	0.988002063841177
Merged-chr9-22530890-4	chr9	22530407	22531407	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	55192.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	2.85208105069094	2.8006566169017	2.87885811440771	2.73848618948309	2.5812211898166	2.5730898521619	-1.14655772145998	0.129497505396449	1
Merged-chr17-46856831-4	chr17	46856340	46857340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25427.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	9.10772968504505	9.43649471310263	8.77134005952906	8.89778937960625	8.99074414656724	8.75527787504458	-0.344931835838247	0.159904760339165	0.532410372110461
Merged-chr4-86427942-2	chr4	86427442	86428442	+	699.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130361.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.67137778065883	5.02596402581115	4.89772454561719	4.6012586059617	4.65821549002383	4.85463696611334	-0.392879818334621	0.336816865584444	0.726861060604748
Merged-chr3-106782173-4	chr3	106781685	106782685	+	783.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	Lx6|LINE|L1	7964.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	4.3206232182329	4.13605794777669	3.99055149771597	4.23250660964519	3.95840246425653	4.42493892639485	0.130186697343782	0.795304965916187	0.951087765043391
Merged-chr7-16295586-4	chr7	16295092	16296092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8797.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	7.85985125710815	7.863136319273	7.39323799402302	7.84232039032505	8.00705915793162	7.66835101942295	0.171557079389731	0.499514671578111	0.834526991118793
Merged-chr12-85569570-3	chr12	85569119	85570119	+	861.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29486.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	2.95888111196544	2.95906528887568	2.68089088438797	2.89198472085194	2.74210223323592	3.00640472241502	0.0131829220480719	0.985718714364712	0.996933133810519
Merged-chr17-28258423-2	chr17	28257923	28258923	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	-13285.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	3.80445568044941	3.95685179723541	4.08012263710381	4.19013853848459	4.05023774860588	4.05414410859876	0.456066229615715	0.356544665358006	0.743338140239757
Merged-chr6-57707914-4	chr6	57707415	57708415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	L1_Mur3|LINE|L1	5460.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	4.90372680912602	4.88350415410705	5.0154287915029	4.85147260335828	5.03999260444875	5.20890071448596	0.227458827057639	0.549749712148692	0.86042385916162
Merged-chr10-17186399-4	chr10	17185946	17186946	+	770.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90664.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.27199329009277	3.18793752536267	3.32838679135805	3.25650731538565	3.17444453083727	3.50464927374087	0.202212280554296	0.745839522755557	0.936251303305737
Merged-chr9-31212689-2	chr9	31212147	31213147	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-799.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	3.36994435195704	3.51531065512042	3.35179706456831	3.42820698955725	3.57221490704039	3.53468748364188	0.358627073519337	0.539238458316406	0.855810922857494
Merged-chr5-43113626-4	chr5	43113129	43114129	+	901.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119834.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.76120625767348	4.98465763009559	4.53794952279999	4.90832842692248	4.79170354123856	4.69340611872125	0.039526396498756	0.924126626445914	0.982905462980868
Merged-chr11-100703689-2	chr11	100703189	100704189	+	791.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_030150, exon 3 of 13)	exon (NM_030150, exon 3 of 13)	582.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	7.93498272356219	8.06515136273133	7.82008681237962	8.32312233504252	8.56077716752798	8.11754441077585	0.570814638075307	0.0145812862212098	0.130026756392072
Merged-chr1-143920227-2	chr1	143919727	143920727	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83922.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	4.28120956455767	4.23713871763959	4.42717629295355	4.02894246281745	4.4194165691276	4.27964756295609	-0.141786342191008	0.76424923956382	0.941958626520407
Merged-chr7-96790506-3	chr7	96790005	96791005	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045874)	TTS (NR_045874)	11044.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	2.41130356370156	2.50669077761452	2.71826387453868	2.31875720323941	2.27058481596145	2.61353919230456	-0.882567014531062	0.299539587673415	1
Merged-chr4-3608530-2	chr4	3608030	3609030	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	B3|SINE|B2	33651.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	4.11155458319467	3.69577356603418	3.97131900281786	5.13041786909304	4.6563286717657	4.94917294191283	2.59654463571949	3.7169499581992e-07	2.27077806256857e-05
Merged-chr19-42518797-4	chr19	42518319	42519319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	14.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	8.05916222949149	8.61581086260772	8.19070130997093	8.21501691130067	8.35289609984269	8.20011306231879	-0.0790144906119612	0.747592840339848	0.936653971666454
Merged-chr5-140742053-4	chr5	140741574	140742574	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 3 of 7)	intron (NM_173405, intron 3 of 7)	17947.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.75930971512002	2.93627193944096	3.23570150604836	2.8309896959219	2.8472060322266	2.85444683080779	-0.6791033141338	0.350125652463365	0.738177163457543
Merged-chr8-122934145-4	chr8	122933649	122934649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	MT2B|LTR|ERVL	85775.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.3389366303224	5.80859447314889	5.6880791675591	5.76354913919591	5.68407820754523	6.13299110608745	-0.212157542391123	0.552639425970127	0.861817968703681
Merged-chr3-103378253-4	chr3	103377774	103378774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	98981.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	3.17201514560918	3.05917565809563	3.1131431202662	3.61214472646159	3.40143235053505	3.58493030012222	1.69929116652139	0.00730776033849401	0.0806665060023095
Merged-chr18-69574120-2	chr18	69573620	69574620	+	830.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	227960.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.93369238215279	3.10812288457321	3.15299341792284	3.03551903882077	2.77822947610679	2.99309518309175	-0.608843174108015	0.380400844811543	0.762534569734688
Merged-chr19-8898029-4	chr19	8897523	8898523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-34.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	7.05935343020055	6.86487397442372	7.0967873842718	7.06395213213748	6.94451627649198	6.92893049439925	-0.0387658011223501	0.874874750592109	0.970813891247597
Merged-chr5-149636341-4	chr5	149635825	149636825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-10.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	5.60280109058671	5.90414444010312	6.06943374498865	5.43470937164982	5.61055132416432	5.7187189197429	-0.5022810869154	0.133229276692322	0.488352467227564
Merged-chr9-111272515-2	chr9	111272015	111273015	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	670.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	8.19729555368336	8.64553284985059	8.0772071093752	8.05191758126421	8.22324608936381	8.34760911702763	-0.175855473698867	0.485020061289207	0.827320846708454
Merged-chr15-83149175-4	chr15	83148670	83149670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004432)	promoter-TSS (NR_004432)	208.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	8.94457838746091	9.11388889103278	8.66030745144627	8.82009094089135	8.82254101603666	8.55924941621763	-0.24897960384032	0.274202098130001	0.671699134465491
Merged-chr17-35190183-4	chr17	35189624	35190624	+	823.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1684.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	6.21432549834509	6.01572810378202	6.59956309673005	5.80634030791947	6.07172835306554	6.03493051503462	-0.527672746788799	0.10109394094086	0.424047216706513
Merged-chr8-109868505-4	chr8	109868023	109869023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122594)	promoter-TSS (NM_001122594)	-80.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	6.57260340227884	6.63316653047624	6.56336271588006	6.88018817929123	6.45133484216512	6.55271456853338	0.0781758863555706	0.776864168653907	0.944920952024827
Merged-chr15-89404739-3	chr15	89404248	89405248	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162880, intron 1 of 2)	intron (NM_001162880, intron 1 of 2)	5515.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	4.03925751319759	3.96078339643898	4.06103193622529	4.01880177515041	3.71704594605898	4.1739733042699	-0.139450786047127	0.787201063220032	0.948718549121005
Merged-chr17-81551986-4	chr17	81551461	81552461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	186426.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.97767687685517	4.76753822930276	4.78998540843135	4.87771461973776	4.78916606957314	4.89348766651577	-0.00313156846254788	0.993571175340654	0.998702045803685
Merged-chr16-4685272-3	chr16	4684735	4685735	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135112, intron 1 of 10)	B3A|SINE|B2	1165.0	NM_001135112	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	4.59696855947896	4.44610228470277	4.52277525367354	4.98638088994984	5.20172058483901	4.80128071718757	1.13489364479759	0.00551456492802496	0.0656540161011733
Merged-chr8-94703599-4	chr8	94703102	94704102	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7360.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	4.07679924480186	4.33855423757411	4.16079298749362	3.98067835132796	4.19532472337778	4.48350302041005	0.0797798415592172	0.871521378655938	0.970223306350909
Merged-chr18-43453317-3	chr18	43452859	43453859	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15073.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	2.95874451512854	3.01109567750307	3.25459616264142	3.17409386243978	3.08158229001882	3.27088969573341	0.434658561997185	0.508643510234009	0.839879528487684
Merged-chr15-64263780-2	chr15	64263280	64264280	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	48893.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.98516731674966	3.98162555054857	4.30332878734327	4.14972667369585	4.00779770643866	4.15418095707033	0.0371133962076792	0.939722495692738	0.986731489878728
Merged-chr15-66560642-2	chr15	66560142	66561142	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 1 of 9)	intron (NM_172514, intron 1 of 9)	404.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	8.02452801712301	8.6402451599433	8.04493554267675	8.05196135342975	8.44835460198187	7.70475995919501	-0.227839065449738	0.448348292349058	0.807213188285018
Merged-chr13-95639009-4	chr13	95638496	95639496	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-20530.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	4.27024073428654	4.02651089160103	4.8771397392743	5.033962895735	5.01072788867892	4.90738622124393	1.30517046360247	0.0071629238279305	0.0794895393270793
Merged-chr14-31423282-4	chr14	31422780	31423780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-5603.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.49751923137702	7.27560343703659	7.07664479552423	7.29479659213697	7.31463344980886	7.27200932497001	-0.0120740651281194	0.960824216458164	0.990386809359123
Merged-chr9-65569647-4	chr9	65569163	65570163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	10424.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.56818325311609	8.37620317954519	8.237335692101	8.16339824699475	8.51477815242036	8.18732628745056	-0.140591056685544	0.546086429497873	0.85849711034619
Merged-chr13-117019201-2	chr13	117018701	117019701	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	Tigger5|DNA|TcMar-Tigger	6315.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.61009700355032	3.73235360063089	3.73092833704514	3.75659703678115	4.01534207652079	4.04458406407015	0.812706124873415	0.125140365507681	0.473411208600278
Merged-chr9-114851996-3	chr9	114851497	114852497	+	923.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7845.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	3.57625531809749	3.84414525603256	3.80728559533338	3.34031484308558	3.14084020640638	3.40684529979651	-1.74302076585196	0.00461402052885488	0.0579312494366389
Merged-chr2-58197058-4	chr2	58196534	58197534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	33060.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	4.92562250064508	4.57491657146844	4.58073662287013	4.7106336621339	4.79138764903104	5.08916026133719	0.352594461978743	0.404084653584868	0.779358170625725
Merged-chr2-119208892-4	chr2	119208362	119209362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139139)	promoter-TSS (NM_139139)	-67.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	7.17020409294194	7.61242618759506	7.37634764584363	7.4205041941991	7.69468974374725	7.30980202203272	0.133992210322308	0.608372798080936	0.88499088740025
Merged-chr1-85262087-1	chr1	85261587	85262587	+	903.0	f1_balb.idr	intron (NM_175219, intron 1 of 7)	intron (NM_175219, intron 1 of 7)	8479.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.82661565804227	4.3287236308836	3.775015482219	3.17124570011389	2.95591618101075	3.89613209020447	-1.7068129982975	0.325103644749926	0.717970213571373
Merged-chr4-101156377-2	chr4	101155877	101156877	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	87339.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	5.18759444887337	5.41529857032954	5.62475944272331	4.84052696947343	4.91962795200344	5.04475038164845	-0.992243315974117	0.00817694926721318	0.0873972504336897
Merged-chr2-57240038-2	chr2	57239538	57240538	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 1 of 16)	B2_Mm1t|SINE|B2	1656.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	2.6757324870422	2.66303298031623	2.57612471279795	2.68313104257357	2.58357773806829	2.83631002615741	0.318713231450686	0.672829248903734	1
Merged-chr16-36934951-4	chr16	36934418	36935418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-65.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	8.10239831955558	8.26231299487005	8.09452365127071	8.25196600347411	8.49192243051679	7.85392453977375	0.109809933073761	0.661606495136848	0.906493864324557
Merged-chr7-67242654-3	chr7	67242107	67243107	+	916.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	L1_Mus1|LINE|L1	19991.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	7.12453977361862	7.05289889976192	7.18168811409397	6.97082025055847	7.39549284128235	7.04986652996585	0.0661878429909672	0.797214499588211	0.951678829711438
Merged-chr8-83566748-4	chr8	83566255	83567255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025843)	promoter-TSS (NM_025843)	-3.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	6.85568581953993	6.83032583347427	6.65055617495407	7.04536964658632	7.00402102981584	6.58643138573894	0.182070864089709	0.502553265078278	0.836562439638842
Merged-chr4-130824487-1	chr4	130823987	130824987	+	543.0	f1_balb.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	31950.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.444038463553	4.10093145890225	4.3923171386478	4.49651512873508	4.39666070646618	4.65989608278976	0.505241960078075	0.266999149629879	0.664516381431973
Merged-chr17-12252338-4	chr17	12251834	12252834	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	66326.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	4.30186630899232	4.04341100111782	4.32476996538283	4.37732735355155	4.43977607682214	4.39216801936537	0.481111350040023	0.290940685649036	0.688722406016643
Merged-chr14-62354121-3	chr14	62353617	62354617	+	779.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22049.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	3.53942110208026	3.21503283446933	3.38850579958537	3.2284053877455	3.3002542354884	3.51268690713145	-0.157907294549963	0.799227684940943	0.952241087526368
Merged-chr15-99330232-3	chr15	99329735	99330735	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	26951.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	5.42695155013311	5.42157447068348	5.42879366540315	5.23563415545408	5.39463764148812	5.7551310288488	0.0837619176906968	0.811658397476464	0.955304895434479
Merged-chr5-105545204-4	chr5	105544687	105545687	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	RLTR17|LTR|ERVK	25716.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.41323764592017	3.44170962455946	3.54485643776195	3.58061513589195	3.74963691442927	3.66750140686717	0.747244320620655	0.183835202883365	0.567244140856875
Merged-chr3-95675719-4	chr3	95675277	95676277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144899)	TTS (NM_144899)	12140.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	6.95629283123828	6.89758973486085	7.04536642082282	7.15131680696318	7.48601065347969	7.02286839729898	0.425920040135334	0.1011312251265	0.424096713049379
Merged-chr16-48812188-3	chr16	48811700	48812700	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4656.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	4.06403867138689	4.01990315246123	3.77424057492724	3.86817377200995	3.77203117768573	3.73618960921613	-0.538471524261065	0.303440125327486	0.700000106705157
Merged-chr3-95707700-4	chr3	95707201	95708201	+	939.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19784.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.50133649538504	3.62805186522909	3.56856186552379	3.39483237061557	3.54222276913835	3.53153025443675	-0.272892255772849	0.632142696307445	0.895435008062156
Merged-chr6-49074332-1	chr6	49073832	49074832	+	822.0	f1_c57bl6.idr	intron (NM_029353, intron 1 of 3)	intron (NM_029353, intron 1 of 3)	537.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	7.16763867726684	7.08400726095894	7.02310156800693	7.27272255348362	7.28052894016175	7.01245257493556	0.159548736657319	0.511081289876882	0.841331921585713
Merged-chr4-59895372-3	chr4	59894873	59895873	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 8 of 8)	B2_Mm2|SINE|B2	19683.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.413150034328	3.17328156936142	3.22384176204103	3.29063183379247	3.08394645067618	3.1781606217429	-0.380716072989109	0.55090992525303	0.860863360071628
Merged-chr6-117915634-1	chr6	117915134	117916134	+	654.0	f0_balb.idr	intron (NM_001166428, intron 1 of 3)	intron (NM_001166428, intron 1 of 3)	-1660.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	5.44235646893478	5.60197795907906	5.43244505148444	5.49239077752003	5.81383084254511	5.98144773557445	0.508299786286728	0.132729159079686	0.487556413062975
Merged-chr1-131096488-4	chr1	131096036	131097036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	1307.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	8.49875447620573	8.61764774440203	8.3649434382906	8.5113001424645	8.66886445738618	8.4719819071395	0.0766557218542967	0.715443264000989	0.926392907650078
Merged-chr5-143549362-2	chr5	143548862	143549862	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133703, intron 1 of 1)	intron (NM_133703, intron 1 of 1)	656.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	5.38738100717745	5.60094804730984	5.39926090792654	5.60352683101179	5.40487179874922	5.26948700424664	-0.0633048539085234	0.853628396551711	0.965752330271851
Merged-chr15-58701673-4	chr15	58701183	58702183	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121744.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.73569810695489	5.9511479887062	5.79025610405314	6.06143320070173	5.76188935348218	5.71981212949105	0.0479300084730874	0.879565558945621	0.972182768942326
Merged-chr1-120075645-4	chr1	120075140	120076140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	7.64222465245339	7.96890320888288	8.02311504961605	8.07790543310567	8.33375114562023	7.75000567978234	0.280218379463319	0.281558362535506	0.679680531197724
Merged-chr3-95658141-4	chr3	95657639	95658639	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	-582.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.9298367629111	7.78267037852779	7.69350019231611	8.0422985143781	8.29276464782481	8.01211206103504	0.454499876488304	0.0449920979134519	0.267541090772708
Merged-chr19-41345656-4	chr19	41345150	41346150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39420.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.5734969336435	8.33747576098949	8.37647178323513	8.65769358884476	8.70922171742054	8.60104300256504	0.309526379483588	0.13307425804883	0.488069945948211
Merged-chr5-146829697-3	chr5	146829191	146830191	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3199.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	4.64037301999723	4.69694617070717	4.877717824122	6.12639697540657	6.43589569230434	6.06822293310718	2.93663777050195	2.0192186858551e-16	7.30500645272311e-14
Merged-chr6-54593256-4	chr6	54592757	54593757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153573)	promoter-TSS (NM_153573)	-129.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	6.23684718275047	6.30477735391357	6.20269191068915	5.86461303094823	6.02526763098198	5.71065622752849	-0.625265721919681	0.0353358144208788	0.230812594489265
Merged-chr4-117202429-7	chr4	117201921	117202921	+	950.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19797.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.31578596790244	6.48963050391341	6.42966516929539	6.4645050663367	6.55556928083984	6.2091542598159	0.0254944888650022	0.927175959304647	0.983584626679457
Merged-chr17-26231233-4	chr17	26230723	26231723	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13019.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.60241949645768	7.57432991879937	7.40826444404862	7.49813850501622	7.96032706135035	7.29284224054843	0.135609972142314	0.617679662112083	0.888884704016792
Merged-chr19-7020299-4	chr19	7019758	7020758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	-789.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	7.80647497299096	8.1458560769028	7.91650631595574	7.72275672967859	8.20781144083611	7.91793427620998	0.00652473263391161	0.97920072181359	0.995177657748265
Merged-chr9-75437758-4	chr9	75437265	75438265	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3759.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	4.2433303739881	4.11833131572658	4.17024912599422	4.73167629347425	4.53720464945211	4.38230159487005	0.999991364380382	0.0270215324779418	0.195717938233338
Merged-chr12-54985198-4	chr12	54984695	54985695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	CpG	1141.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	7.80795671083676	7.60252970674036	7.64903292634292	7.74879039269154	7.42230417269466	7.73230138419376	-0.0768149650060149	0.745754757100059	0.936251303305737
Merged-chr9-15046470-2	chr9	15045970	15046970	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019482)	promoter-TSS (NM_019482)	-992.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	2.80995258821335	3.06159309553711	2.72328303050868	2.94025255676092	2.68860399000983	3.37592257993167	0.714050799191242	0.366931157319439	0.751972999808775
Merged-chr6-65585595-4	chr6	65585093	65586093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4805.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	3.76288169141564	4.07424983014638	3.86788327382626	3.88075408342297	3.67923739050838	3.49443058950337	-0.68193347058019	0.224715265956934	0.619609949365475
Merged-chr12-108765052-4	chr12	108764575	108765575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28236.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	7.57984274387532	7.79659753691789	7.70778642140125	7.59587193779667	7.8349664157754	7.88006196235006	0.111393993472076	0.627445286724502	0.893246431319675
Merged-chr1-170510390-2	chr1	170509890	170510890	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	46720.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	2.69795026237443	2.49193521294144	2.80425652582594	2.40368030032561	2.35153262637442	2.70034325393858	-1.05436901248702	0.205164505294866	1
Merged-chr3-85601987-2	chr3	85601483	85602483	+	675.666626	f0_balb.idr|f0_c57.idr	intron (NM_144896, intron 3 of 12)	intron (NM_144896, intron 3 of 12)	27854.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	4.02801799345498	3.80975845576442	4.00401178690651	4.23647769350145	4.10052156280931	4.12116141902679	0.602275999227142	0.218891151282302	0.613128894826908
Merged-chr2-151542524-4	chr2	151542021	151543021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302078)	promoter-TSS (NM_001302078)	38.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	5.0782438891086	5.09724600689386	5.20153020567156	4.84076694866711	4.59387549431183	4.41731787449078	-1.09005577877624	0.00754160460095617	0.0825190520998027
Merged-chr5-104982702-4	chr5	104982205	104983205	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030239)	promoter-TSS (NM_030239)	12.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	5.29552909759698	5.35760740442836	5.7891111043446	5.89038246566365	5.73265704822537	5.72637411083998	0.560388713897705	0.100259351601163	0.422227964775259
Merged-chr14-75149473-3	chr14	75148969	75149969	+	736.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	13044.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.60724508158286	4.90528691507533	4.48866227571234	4.52408470374087	4.8127929187443	4.87651957716175	0.1300440000411	0.763426432397712	0.941793063578371
Merged-chr1-89450226-4	chr1	89449733	89450733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4578.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	4.94685340460378	4.86194805187721	4.50607986230449	4.21118368536436	4.19706460471947	4.03080185350828	-1.62879987871089	0.000487292083845495	0.0102988569247183
Merged-chr15-58142064-2	chr15	58141584	58142584	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	MIR|SINE|MIR	718.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	6.40249802261924	6.63763996803289	6.40977019180476	5.64953957148459	5.59146613083024	5.74455533779942	-1.44039958680779	9.57057674584574e-07	5.21853571342289e-05
Merged-chr7-67459289-2	chr7	67458789	67459789	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86431.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.90615851009984	6.90745354090413	6.98423969801173	6.8156421945236	6.78928121722783	6.9479691170762	-0.128312143113441	0.599473365216341	0.881040337941947
Merged-chr9-102852399-1	chr9	102851899	102852899	+	742.0	f0_balb.idr	intron (NM_001284258, intron 1 of 13)	Lx9|LINE|L1	17479.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	3.11564534525639	2.91612910855396	3.3917321998767	2.73622446420599	2.64644145898212	2.7210894526537	-2.35547291453351	0.00285234001001885	0.0405012811524997
Merged-chr12-116416740-3	chr12	116416257	116417257	+	761.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_133762, intron 7 of 28)	MTD|LTR|ERVL-MaLR	11355.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.17534118893796	4.28433795697617	4.04372667899583	4.20106295688994	4.14454612037925	4.2090965415589	0.0115765943110219	0.980343857041794	0.995512982807197
Merged-chr16-11433983-4	chr16	11433492	11434492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28344.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.42402588796256	5.68323292112896	5.66724423269285	5.06089291895162	5.33047687534395	5.45901794636399	-0.589505568609138	0.0934634756151772	0.407193389963535
Merged-chr17-74808534-4	chr17	74808031	74809031	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	90781.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.88282915012034	3.87624993162931	3.85037661253928	4.83017232959275	5.07495371288761	4.4483511710348	2.56276238048021	3.32105389011322e-07	2.05150892419109e-05
Merged-chr6-65596694-4	chr6	65596197	65597197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001495, intron 3 of 7)	intron (NM_001001495, intron 3 of 7)	6299.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	3.76643713125346	3.65017636085557	3.61329958803116	3.64529377547874	3.68745452027908	3.57394659325801	-0.14002454933207	0.798160085731181	0.951930937621884
Merged-chr16-18412202-4	chr16	18411702	18412702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	1292.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	6.832224540818	7.21083283765295	7.04367702681557	6.6913610922865	6.8280849304684	6.47701949717959	-0.549316768938716	0.0442279700499456	0.264706087729809
Merged-chr9-51076594-3	chr9	51076071	51077071	+	899.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033534, intron 1 of 7)	intron (NM_001033534, intron 1 of 7)	523.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	3.69170806918101	3.55269586865239	3.51335103826196	3.37279210797873	3.08747856248186	3.10943145994778	-1.57998945279934	0.013897911881127	0.126163087383479
Merged-chr10-99107058-4	chr10	99106572	99107572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027740)	promoter-TSS (NM_027740)	-10.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	6.50130347354001	6.34471727847894	6.00510529240614	6.50794958541812	6.34910637697593	6.42989857578775	0.189288824001445	0.518305736020361	0.845156513047069
Merged-chr11-115629286-2	chr11	115628786	115629786	+	785.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	-991.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.58704760158743	4.15376492159251	4.55269262100736	4.8053566709805	4.70734382802558	4.77626706965715	0.774823667528087	0.0774110101766548	0.367016371154779
Merged-chr4-80310844-4	chr4	80310347	80311347	+	981.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-523366.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	5.36945982775463	5.62664449972541	5.66886752098998	5.53239678322185	5.74484988331984	5.59629576237732	0.143254424431051	0.664774421916632	0.907721942545399
Merged-chr3-88835140-3	chr3	88834653	88835653	+	865.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242372)	promoter-TSS (NM_001242372)	-78.0	NM_027389	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	3.36313312991451	3.26916125929638	3.59564527713735	5.02056508452418	5.14818091196362	4.80499525789753	7.34849457700939	1.56332761822938e-09	1.66344455828172e-07
Merged-chr1-171038563-4	chr1	171038061	171039061	+	955.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19635.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	7.25312472729224	7.22900921883554	6.64398752287351	7.14088745804302	7.58619948875036	6.91966722995233	0.262972993818123	0.401936473285232	0.777823507457637
Merged-chr1-36589225-3	chr1	36588742	36589742	+	722.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	4090.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.07150625852129	3.99291936221598	3.76501417073201	4.15287513440312	4.04330453344728	4.04631745907226	0.363526967254688	0.469793707713835	0.819126978705139
Merged-chr17-27038927-2	chr17	27038427	27039427	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9668.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	3.74456738212461	3.7681924030346	4.31035487604675	5.94832393053244	5.57927864929592	5.39082883497222	4.58345578929336	2.10288494943124e-16	7.54210564104632e-14
Merged-chr2-90567088-2	chr2	90566588	90567588	+	796.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	13559.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.03137112108218	4.91276008494855	5.45460152013783	5.48910401399721	5.43192970845142	5.34265539390404	0.576209037972451	0.121453517033126	0.466185878585365
Merged-chr14-70212807-4	chr14	70212302	70213302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5131.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	7.73027657560419	8.02929601593592	7.81577416816297	7.85692579515364	8.14437178666737	7.73312018687677	0.0912014277834267	0.706355497229141	0.922959194348248
Merged-chr6-115722426-4	chr6	115721927	115722927	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	36572.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	3.38707878774337	3.27449559882401	3.18256275947399	3.4635345087406	3.53486989260674	3.59565942479027	0.924323657144019	0.125280397428369	0.473596443106615
Merged-chr14-54764982-1	chr14	54764482	54765482	+	621.0	f0_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16904.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	3.95017259322549	3.52987396918882	3.4472916850473	3.42276816254403	3.00188757142178	3.73344196150401	-0.850895689899503	0.227891023389825	0.622981752321771
Merged-chr10-52233657-4	chr10	52233122	52234122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	3.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	6.01506188333535	5.86002890783584	5.6864392358737	5.49939632319181	4.82789760637849	5.23584330154758	-1.245469505798	0.000976290532385136	0.0176888934463591
Merged-chr7-110920986-4	chr7	110920487	110921487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194464, intron 10 of 20)	intron (NM_194464, intron 10 of 20)	16002.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	5.96611814384495	5.91164725461272	5.85296739224358	5.90668649831623	5.81368438551216	5.73358300378387	-0.162091590781597	0.5884878263633	0.876506194394398
Merged-chr10-22731420-4	chr10	22730890	22731890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	57.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	7.81364780092485	8.13983180513131	8.02340992949103	7.8825412011483	7.7710002886043	7.90002688244017	-0.213689535454839	0.341454145184001	0.730861271883589
Merged-chr2-130488787-4	chr2	130488275	130489275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	38497.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	7.28212787908223	7.00666356999074	7.01728754400023	6.75204889909117	7.11668268146141	6.922869747692	-0.252986193597337	0.335571459607132	0.725705115162445
Merged-chr10-45058311-3	chr10	45057805	45058805	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8909.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.12007404373353	3.09303134953838	2.92281877747619	3.09986328883232	3.0277057956027	3.23436141574264	0.289985069562429	0.663319677694633	0.907142972127644
Merged-chr6-48582163-2	chr6	48581661	48582661	+	675.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7284.0	NM_183309	330305.0	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	2.65214270631545	2.82447768092522	2.59220607572085	2.76333844352329	2.8572778399619	2.91812858817058	0.767365824929514	0.304943639246325	0.701230797737315
Merged-chr11-106254858-2	chr11	106254358	106255358	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025310, intron 3 of 20)	intron (NM_025310, intron 3 of 20)	1226.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	4.77511693985377	4.70968478302083	4.93899277623351	4.63386959337317	4.55967991808263	4.82775467039711	-0.315497230368069	0.437370969447405	0.79993041862787
Merged-chr8-30936292-4	chr8	30935818	30936818	+	790.0625	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153209.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	2.84067346180848	2.88977185296538	2.91001532718225	3.84305537170366	3.48226051929697	3.59528094460284	3.72090753438976	3.90267074457391e-06	0.000178326978206758
Merged-chr7-114067955-2	chr7	114067455	114068455	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	49826.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.89469010553212	3.59811940178172	3.77931601613166	4.55661241674665	4.40041092872052	4.01735332666759	1.72636477358419	0.00118928081400897	0.0206247765677487
Merged-chr18-34557690-3	chr18	34557210	34558210	+	873.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	15382.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	3.23130137415922	3.40853494365062	3.49363215149374	4.5073733022513	4.61407390361441	5.05669343806284	5.05437342821447	1.92811835373094e-10	2.40532041944893e-08
Merged-chr1-87658222-4	chr1	87657747	87658747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	37935.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.29726025739701	5.96953400675834	5.96471515819344	6.24458265272909	6.33533665365603	6.45799410642415	0.421536743207544	0.152518446820845	0.520646355818209
Merged-chr7-46920725-2	chr7	46920225	46921225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	-756.0	NM_021884	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	5.49962855570474	6.03889867885953	5.84878160402928	5.90297615756158	6.00632272697577	5.83563641331692	0.185107001216372	0.575020249843551	0.87094931637326
Merged-chr17-67329617-4	chr17	67329109	67330109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24850.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.39132339432362	7.67682411123082	7.19641795223702	7.75613799804176	7.92400221271815	7.37544018224984	0.390902850702866	0.151454439311653	0.518929380900567
Merged-chr16-35363903-4	chr16	35363398	35364398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133704)	promoter-TSS (NM_133704)	20.0	NM_133704	317717.0	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	6.41032317399439	6.62241768050973	6.11942315248422	6.49329486302689	6.24814190049426	6.18061825833393	-0.156045799609355	0.604002653776101	0.882924929120582
Merged-chr17-28750787-4	chr17	28750285	28751285	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-18532.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	3.34414029718159	3.41620482620995	3.61138194387293	3.10358486960722	3.42459593365185	3.42242836892044	-0.499321294936969	0.426241159932819	0.793775305738234
Merged-chr4-141868561-1	chr4	141868061	141869061	+	588.0	f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	6359.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	4.06384717965641	4.03862775837692	4.29383241424814	4.40448777850129	4.44052689410039	4.36136110884502	0.753823232602471	0.0998500948021105	0.421421592102156
Merged-chr17-56443463-4	chr17	56443003	56444003	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	18718.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.84206992835786	3.81357170605178	4.01183881774977	3.66897437828976	3.57012774687128	3.89397896076041	-0.58284143614376	0.279193551964197	0.676740185033701
Merged-chr17-68223433-4	chr17	68222985	68223985	+	826.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50312.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	3.7337605309616	3.58419398890727	4.11236233495136	4.00479012991294	3.68348166504292	4.13637324992828	0.396337516920457	0.483922771900228	0.826584678003739
Merged-chr2-120540035-4	chr2	120539535	120540535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 3 of 21)	intron (NM_011743, intron 3 of 21)	23824.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	6.19506195863065	6.16622447837508	6.20743689416188	6.13279598290097	6.55811282654951	6.52874540978279	0.38680046739668	0.183078727096283	0.566085379224821
Merged-chr8-46147713-2	chr8	46147213	46148213	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15938.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	3.67354937631506	3.61055255853049	3.75744864864128	3.93435365623959	3.97441338150092	3.72176280844044	0.686687890508516	0.196325770895218	0.584112516346026
Merged-chr11-75140650-2	chr11	75140150	75141150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	27502.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.02338455421445	6.04503888977304	5.81515006944745	6.05820154806579	6.03327146191074	5.35864435116091	-0.174877291526993	0.620124715028633	0.890026802452616
Merged-chr11-33162401-4	chr11	33161901	33162901	+	948.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008722, intron 1 of 10)	intron (NM_008722, intron 1 of 10)	805.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	6.46176060602475	6.84664453819912	6.53107921566768	6.06943089094462	6.0380256710407	6.00102530464585	-0.976654447088687	0.00069598725087827	0.0136134713613256
Merged-chr11-96311224-2	chr11	96310724	96311724	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4314.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	5.41506648818484	5.65337745535315	5.7133106987385	5.83027150958561	5.65747756412454	5.49729732208194	0.146642646308143	0.658130373161843	0.904937992416562
Merged-chr15-99252095-4	chr15	99251594	99252594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016766)	promoter-TSS (NM_016766)	-133.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	7.38976020637249	7.4293668511707	7.56104387017997	7.47295089563509	7.59028143837642	7.41683720669707	0.0618963477874151	0.785336754157797	0.947890183314723
Merged-chr19-3581647-4	chr19	3581192	3582192	+	748.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-5943.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	3.42692531236491	3.36443251054231	3.54302887471657	3.26802248915996	3.13033869241678	3.80406793848758	-0.0630186253874468	0.923337800428343	0.982699256056545
Merged-chr4-86632614-4	chr4	86632104	86633104	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20549.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	2.34220604704461	2.41199624138931	2.22576652599688	2.53394831897171	2.33602406882904	2.7522247289694	1.32739865080838	0.130469459475967	1
Merged-chr11-51925776-4	chr11	51925274	51926274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41857.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.98574025891292	7.12956132113002	7.01559422538534	7.04686105018968	7.2335380256409	6.65868773374863	-0.0471274363944526	0.862600761179901	0.968083292979043
Merged-chr4-144908946-4	chr4	144908405	144909405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	15768.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.30917200020515	6.22919968748189	6.34105476211175	6.21520071218975	6.04526675693171	6.07063407589459	-0.30169879422985	0.280850541611348	0.678974689112037
Merged-chr11-114927737-4	chr11	114927254	114928254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	6632.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	7.61454325663139	7.20126861664837	7.74081420438954	7.41796321639779	7.62035575888998	7.5473376048602	-0.0015754067837392	0.995122554533067	0.998961028701257
Merged-chr16-91849083-4	chr16	91848594	91849594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	82536.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	8.2115410835979	8.05304178036948	7.90928403389627	8.09389701786403	8.23821904551113	7.95716832845073	0.0545440818089978	0.808893753353446	0.954721853010197
Merged-chr12-3706488-2	chr12	3705988	3706988	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-100492.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.02006650466212	3.15276157323623	3.44527038791093	3.64378647820417	3.47131530589634	3.46238712371829	1.26409230361516	0.0477880896029699	0.27698184450292
Merged-chr11-4197207-2	chr11	4196707	4197707	+	923.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	10374.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	3.64459032338278	3.60374148294166	3.66666175956629	3.81673639161389	3.52523047265344	3.68436733997243	0.137536073635384	0.803324242859978	0.953456246254145
Merged-chr2-25357193-2	chr2	25356693	25357693	+	904.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-861.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	4.15851162647366	4.2775072704362	4.20929253259529	3.86011258978967	3.87971892595654	4.09469008356612	-0.807332530249989	0.0980802240787025	0.417424136112765
Merged-chr18-75371660-3	chr18	75371158	75372158	+	725.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 2 of 3)	intron (NM_001042660, intron 2 of 3)	4293.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	4.68966697336185	4.63410115170927	4.71359045598351	5.03904664602491	5.15965517947595	4.89747813361511	0.822943797009536	0.0334916714705056	0.223416675713536
Merged-chr2-52455780-4	chr2	52455284	52456284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-30910.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.8873403955322	3.54278695890791	3.75393393549256	3.70503797194108	3.63815406075912	3.31013388492985	-0.570023830664415	0.344113648779398	0.732901824706566
Merged-chr6-115343267-4	chr6	115342759	115343759	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17692.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.25084038575107	6.09515822136561	6.43584040472892	6.14235038067712	6.19420600449133	6.19067322541715	-0.138637754569244	0.627713293977821	0.893339236443994
Merged-chr1-88702229-4	chr1	88701707	88702707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177305)	promoter-TSS (NM_177305)	-16.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	8.17121120604063	8.11102507774449	8.11893350026995	7.88911021376104	8.02355854867938	8.02768961485114	-0.216410370609241	0.298478734146331	0.695174900936234
Merged-chr17-46889721-6	chr17	46889227	46890227	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-894.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	6.50031181446474	6.68816494129201	6.4961539871029	6.53151147754503	6.56790667425592	6.38704237641468	-0.104527393092601	0.694857077641185	0.919217788511748
Merged-chr1-162549213-4	chr1	162548707	162549707	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-862.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	6.04278935449689	6.49269582447336	6.4544132306757	6.28817342151897	6.83208117643626	6.19720116557907	0.229358023203953	0.489186982929328	0.829463665877031
Merged-chr1-85594509-1	chr1	85594009	85595009	+	702.666687	f1_balb.idr	intron (NM_030194, intron 2 of 11)	intron (NM_030194, intron 2 of 11)	4301.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	2.57796853432438	2.46501664278406	2.70398615043254	2.35196769417229	2.38775350618566	3.05583829196474	0.296793196519522	0.736111593675155	0.933046642264646
Merged-chr5-96968761-4	chr5	96968259	96969259	+	880.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28930.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	5.02963277576773	5.181026774493	4.88002770645361	4.52188105703834	4.62702268547978	4.28834189184498	-1.24851089166112	0.00353365797012801	0.0475005835829421
Merged-chr7-73559796-2	chr7	73559296	73560296	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	6.90387166438189	7.11645177373695	6.96658239743911	6.92549422678012	7.31786880380606	6.91075306331441	0.115356264530625	0.664046032610735	0.907483408305124
Merged-chr10-118810173-2	chr10	118809673	118810673	+	745.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	58730.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.08745580161222	5.18375168778231	5.92124554367093	5.83705912742467	5.89043761507811	5.93626864565529	0.175686174942002	0.645463004678883	0.900561664422279
Merged-chr10-126901324-4	chr10	126900816	126901816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026858)	promoter-TSS (NM_026858)	55.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	4.41226547896321	4.64703740726326	4.50882762990833	4.57860474722409	4.54018048376111	4.09904244458134	-0.232535448024832	0.617548958612026	0.888810836054056
Merged-chr2-32608756-4	chr2	32608251	32609251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289549, intron 2 of 6)	intron (NM_001289549, intron 2 of 6)	1766.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	7.18184923455105	6.60778978697287	6.54304369370513	6.86550524174169	6.90591151778193	6.56604618522948	-0.0406396068833229	0.894750865190313	0.975576532925631
Merged-chr11-115535672-4	chr11	115535152	115536152	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133354, intron 1 of 3)	CpG	578.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	7.46533297591678	7.20118290603051	7.15895516283664	7.72171755095556	7.31980803110069	7.59607171735303	0.391769853064216	0.123881812649859	0.471070188601109
Merged-chr2-128967879-4	chr2	128967392	128968392	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178404, intron 1 of 11)	GC_rich|Low_complexity|Low_complexity	490.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	8.69083510280617	8.80035093827226	8.36877740845633	8.61721669878766	8.49845298328029	8.46434906481562	-0.152044431585905	0.494780827721615	0.832098209532918
Merged-chr4-130890256-4	chr4	130889768	130890768	+	865.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23066.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.71070247928876	3.61566797825237	3.62977744548058	3.52385413396724	3.27589310966273	3.48409754962504	-0.833907272714466	0.150621975895395	0.517527083053393
Merged-chr4-63206513-3	chr4	63206011	63207011	+	676.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8901.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	4.07478111677566	4.20890334503	4.51050727000279	4.72172485395356	4.79375810351745	4.87756965282115	1.3300723301298	0.00264345081295594	0.0382333139656593
Merged-chr1-167340525-5	chr1	167339990	167340990	+	870.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-9501.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.00667326447795	5.27704892135223	4.8952524013783	5.09701111820667	4.7344955002918	4.76233482319824	-0.437801247957142	0.277229419686871	0.674441896764095
Merged-chr8-83144786-4	chr8	83144248	83145248	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-20604.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.81772264512365	7.00784820186313	6.81600205975245	6.07045292796774	5.48016821462058	6.04503775889912	-1.66050420921045	1.18217852507329e-07	8.30799921573468e-06
Merged-chr5-34487981-2	chr5	34487481	34488481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25998.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	6.51249249455447	5.91471727394084	5.74084928221858	5.88692806573109	6.18850234662279	6.18915375225936	-0.027749343768033	0.937416241130799	0.986057836872162
Merged-chr5-114647470-3	chr5	114646965	114647965	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10956.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.9376672317106	3.88783566275456	4.14165868046634	4.2200763686881	3.9558443882621	3.75858861766334	0.0282597351546848	0.956908917503523	0.989887454023164
Merged-chr11-35178781-2	chr11	35178220	35179220	+	742.625	f0_c57.idr|f1_c57bl6.idr	intron (NM_011412, intron 3 of 35)	intron (NM_011412, intron 3 of 35)	57264.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	1.96112949423312	2.07281589229374	2.19972442701082	2.37206764147141	2.29125723273343	2.53268197914266	2.49788260965875	0.0118508575958923	1
Merged-chr17-70989187-2	chr17	70988687	70989687	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	1329.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.96281640651369	5.62694972958365	6.03014127875037	6.18527221326527	5.77313720083976	6.1120765344264	0.263253730528872	0.421337360661065	0.790226764066497
Merged-chr7-102193997-3	chr7	102193511	102194511	+	607.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287167, intron 4 of 19)	B1F2|SINE|Alu	15856.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	3.5395377677342	3.63650305079423	3.70298960971441	3.41768502764245	3.16415232691113	3.56950940763005	-0.899586331194317	0.137668976183065	0.496001739347931
Merged-chr6-122310524-4	chr6	122310098	122311098	+	934.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1878.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	5.51409582996654	5.58498052352824	5.91237872393917	5.84450969719401	6.08832439673802	5.80477728777798	0.463736664161127	0.154209655309709	0.523391948075144
Merged-chr1-60865359-4	chr1	60864869	60865869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-43656.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	3.77563983946458	3.97076633928431	3.73832098989866	4.00666757553743	4.4000912065044	3.97221944239128	0.930797893835061	0.0793185635344604	0.372351990667158
Merged-chr5-146245912-2	chr5	146245412	146246412	+	960.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	14662.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	3.9095833552673	3.95963641199599	3.60158815196478	3.93156549541575	4.01535346230003	3.78831504884639	0.243335852546698	0.651987765192736	0.902896807825606
Merged-chr3-142881103-4	chr3	142880604	142881604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178654, intron 1 of 21)	intron (NM_178654, intron 1 of 21)	900.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	7.23189947906096	7.00690883671025	7.37773949029932	7.21571055921383	6.80257029433623	7.16871124152345	-0.211070359989487	0.43139413122576	0.796881045962937
Merged-chr2-144198887-2	chr2	144198387	144199387	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9597.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	3.26746874144655	2.95843008296421	2.99501842801787	3.4199032182685	3.18299754303139	3.19122101462027	0.794677663746757	0.238676111371171	0.635433307313283
Merged-chr14-23825093-4	chr14	23824580	23825580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	179125.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	4.47328409268241	3.80957847290565	4.56064214890561	4.14452930145499	4.10279566408803	4.69762666127945	0.0468993018788682	0.933067491904171	0.985356091252617
Merged-chr3-54735031-4	chr3	54734537	54735537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	327.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	6.92919404389141	6.97001369454205	7.15048154142989	6.91812300770526	6.77053889619824	7.12435302155479	-0.119583674067434	0.641190544162754	0.898831142174765
Merged-chr2-29670360-4	chr2	29669869	29670869	+	797.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	B3A|SINE|B2	50649.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.65442335958045	3.63502752438375	3.69991512803406	3.55385086173166	3.76135461122654	3.49907183363138	-0.14685871312103	0.793273934571467	0.950312844775479
Merged-chr15-5242451-4	chr15	5241945	5242945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008965, exon 2 of 3)	exon (NM_008965, exon 2 of 3)	1742.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.55586295026401	4.16120092255864	4.45176348591206	5.15272792706	4.80424094858287	5.24216923381232	1.56508358751534	0.000403364458679399	0.0088422361498896
Merged-chr5-29948320-4	chr5	29947840	29948840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64774.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	6.49299018224547	6.32946869228767	6.22680476522562	6.43453642935866	6.51346281000252	6.34860420198983	0.128016919581952	0.640853811503729	0.898653895821881
Merged-chr4-129876730-2	chr4	129876230	129877230	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29496.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	5.73827288297593	5.93726494570931	5.99782588305599	5.90370379892509	6.06116852631824	5.91953175097637	0.137242276839556	0.649402244382191	0.902160587683553
Merged-chr18-46378246-1	chr18	46377746	46378746	+	608.0	f0_balb.idr	Intergenic	Intergenic	-66318.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	4.16108817042696	4.3265287871294	4.19570738075152	4.07978692382883	4.24847256058974	4.12220686645157	-0.207231236827768	0.658992495332852	0.905178188485902
Merged-chr1-85279821-1	chr1	85279321	85280321	+	719.666687	f1_balb.idr	Intergenic	Intergenic	-9255.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.22319628611192	3.57475716657619	3.42024845474801	2.89241906904996	2.92607433637365	3.54187495617879	-1.05006900376916	0.15782404816993	0.529397057168571
Merged-chr3-106482669-7	chr3	106482139	106483139	+	856.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033207, exon 2 of 2)	non-coding (NR_033207, exon 2 of 2)	189.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	6.5328503673999	6.36936161643692	6.23241237411265	6.41693462833959	6.6012693892007	6.27182513473538	0.091721165947148	0.746602794257025	0.936300236930265
Merged-chr7-80838826-2	chr7	80838326	80839326	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23282.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	5.92180279014531	5.76752074479769	5.8102247888108	5.87508979622936	5.54874272761571	6.03354311286284	-0.0257650201486328	0.93686223174326	0.986037792257163
Merged-chr6-113639886-6	chr6	113639460	113640460	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	B1_Mus1|SINE|Alu	1493.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.12203444015375	6.33512721775844	6.15663923670742	6.93153944296859	6.59814757482476	6.77813521715692	0.903830900200837	0.00118870335984246	0.0206247765677487
Merged-chr9-108341995-4	chr9	108341480	108342480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2900.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	8.49010857589358	8.37984944069851	8.07673940844375	8.56730652190237	8.81537559596424	8.47849500618525	0.415960602023195	0.0747032825053129	0.359758694912726
Merged-chr6-58596535-4	chr6	58596035	58597035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011920)	promoter-TSS (NM_011920)	-137.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	6.29934911926603	6.3051803753153	6.24848339567262	6.27276671385293	6.3960130973697	6.54817781811906	0.195264860717382	0.476011385534143	0.822320085856715
Merged-chr2-84370561-4	chr2	84370072	84371072	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 6 of 15)	intron (NM_018782, intron 6 of 15)	54694.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.77890292702665	4.89710159809993	4.76510352852127	4.31244604840205	4.17807083636385	4.47007604063154	-1.25525578511198	0.00345728707155739	0.046806694215774
Merged-chr18-38296726-4	chr18	38296296	38297296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164621)	promoter-TSS (NM_001164621)	-9.0	NM_001361268	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	7.41101143742286	7.75245584569767	7.1735602425154	7.14378300401511	7.18113833764489	6.98894778087894	-0.542804693867379	0.0415575837393622	0.254985587438267
Merged-chr7-27537996-2	chr7	27537496	27538496	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14735.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	5.53067416741522	5.49715741248192	5.69357469563133	5.25871795655985	5.64868421653581	5.89691953080089	0.0939361773794071	0.791005893390292	0.949694766870106
Merged-chr2-26503820-4	chr2	26503337	26504337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	-15.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	6.79559345007376	6.74695066112523	6.83245906774193	6.7133868979332	6.60111251479652	6.75662662506211	-0.161885154316516	0.518474285133359	0.845276231775863
Merged-chr4-129624454-4	chr4	129623934	129624934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-526.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	7.18367401664812	7.13824379228832	7.17583807494444	7.28553536042133	7.64713852588377	7.2575891658174	0.376728768439871	0.129729391429058	0.481808607863907
Merged-chr8-88282856-4	chr8	88282360	88283360	+	982.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109756)	promoter-TSS (NM_001109756)	-132.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.30651349335299	4.1612614259503	3.85160918935342	4.57362810949926	4.13477121548757	4.28424435338548	0.577277157475113	0.25954380237078	0.657131020381498
Merged-chr12-100211233-1	chr12	100210733	100211733	+	916.0	f0_balb.idr	Intergenic	Intergenic	11089.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	3.12612283896118	2.73900695245774	3.21136215978928	2.85111603332317	2.69391166553724	3.00387184417601	-0.89193894832204	0.233247788461373	0.629682827928185
Merged-chr9-49486930-2	chr9	49486444	49487444	+	724.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	-719.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	2.9859475011547	3.1016421808503	3.26396870966456	3.35040719294501	3.31549682559436	3.22146042986737	0.77334328239834	0.22660072887044	0.621559038992965
Merged-chr12-85944349-2	chr12	85943849	85944849	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	119399.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	5.00870849174535	5.03457879913736	5.43290260860039	4.41917874864113	4.62607570734594	4.37744922809837	-1.53284617055999	0.000425663805751287	0.00924768510416529
Merged-chr2-164836664-5	chr2	164836277	164837277	+	839.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 8 of 14)	MIRc|SINE|MIR	3004.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	4.22658744555842	4.07739381409449	4.65428602695002	4.33380112530935	4.2377895149947	4.49336441890262	0.0600526431715977	0.901435368474419	0.977241855233699
Merged-chr14-19889795-4	chr14	19889298	19890298	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038637, intron 4 of 4)	intron (NM_001038637, intron 4 of 4)	50873.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	5.15779970422041	5.18309423271186	5.071580725803	5.25276995259749	5.04839826382884	5.13628940405618	0.00618279440181742	0.98624173956651	0.997033990984076
Merged-chr18-80257024-2	chr18	80256524	80257524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164420, exon 2 of 5)	exon (NM_001164420, exon 2 of 5)	718.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	5.98368246816011	6.05963064161228	6.09423629426877	5.47453648272584	5.74708679348894	6.0707130887261	-0.471905494771559	0.147186747723699	0.512003131462939
Merged-chr11-31898758-4	chr11	31898266	31899266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	URR1A|DNA|hAT-Charlie	27826.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	6.62876278008362	6.69309436733111	6.2043687755655	6.74687029146549	6.8417336016593	6.78249697881243	0.396533371769692	0.156071733949875	0.526319884838338
Merged-chr16-87454205-2	chr16	87453705	87454705	+	713.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024258)	promoter-TSS (NM_024258)	-780.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	3.97961451715356	4.2986365776582	4.3128446288433	4.19709678567018	4.17378442044242	4.05789940763102	-0.152534616689493	0.752277733837468	0.938157651950668
Merged-chr5-32139042-4	chr5	32138526	32139526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2554.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.35198380090107	7.63400132871259	7.42829877636734	7.62127456138217	7.83940108797151	8.00874251526624	0.506939645929107	0.0365749647355408	0.235351455085831
Merged-chr11-118161314-2	chr11	118160814	118161814	+	889.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32095.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.20368613665745	3.27897358696083	3.54244541385539	3.51473139018839	3.18417855671687	3.80448895139295	0.647922183684847	0.317728510471564	0.711518266188251
Merged-chr2-59465910-4	chr2	59465416	59466416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18737.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	2.46563363260374	2.42225212542085	2.50953267817659	2.3404767567287	2.16432184178813	2.32590581126092	-1.29327840284596	0.132604503694718	1
Merged-chr15-64287678-3	chr15	64287168	64288168	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	25005.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.10163620340617	4.00134902489547	4.08154819955452	4.10179796255773	4.01749953878093	3.84783199772485	-0.183547712094295	0.710119741183104	0.924238639711345
Merged-chr9-21147882-2	chr9	21147382	21148382	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	ID_B1|SINE|B4	2024.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.08351395126104	3.03629716239663	3.61147750474195	3.27367549469182	3.03906477904654	3.48558845726114	0.0395723782967756	0.954667202224905	0.989617250984245
Merged-chr13-101722806-3	chr13	101722337	101723337	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-30207.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.86956298125361	3.72664368996115	3.67227424999714	3.54162940765258	3.57469450455089	4.03188890002103	-0.116677375854512	0.837931134435561	0.962292318489704
Merged-chr1-152526436-4	chr1	152525936	152526936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98781.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.32966424383239	5.8977367127637	6.01207757510601	5.96781965720479	5.96901473160611	5.85506991162939	-0.279715689122628	0.367184490636835	0.752113401392775
Merged-chr6-124740470-4	chr6	124739977	124740977	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013535, intron 2 of 2)	intron (NM_013535, intron 2 of 2)	602.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	6.8091168208582	6.74133488491034	6.96323057993688	6.78226699949005	6.93205000410195	7.20505769264231	0.21991474569297	0.403975078495018	0.779201148181772
Merged-chr6-128798903-4	chr6	128798425	128799425	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10284.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	6.67366542554996	6.74176726520991	6.42074790553691	6.68964456801365	7.04241501461764	6.9791562636518	0.446045360935066	0.101849156881646	0.425755571253856
Merged-chr11-17257145-2	chr11	17256645	17257645	+	643.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	-402.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	5.52862650030248	5.27561932626898	4.99846859313677	5.0929655026496	4.97802673811956	5.36441192987105	-0.308378169623866	0.425493731319599	0.793128932002089
Merged-chr17-35812675-2	chr17	35812175	35813175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9038.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	4.74922326239515	4.51398264346126	4.75145272818092	4.69710020184018	4.69082721543707	4.57755391147184	-0.0269358312032022	0.947840558648962	0.988008807662239
Merged-chr4-103215322-4	chr4	103214805	103215805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356276)	promoter-TSS (NM_001356276)	-129.0	NM_177732	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	6.39461923079384	6.65801421837457	6.95627654872301	6.81186094242386	6.21937123970756	6.44771637406937	-0.267039018892475	0.401271347771932	0.777399639198441
Merged-chr13-41635866-2	chr13	41635366	41636366	+	817.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163572, exon 3 of 3)	3' UTR (NM_001163572, exon 3 of 3)	29650.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.13291355678198	2.85025665626711	3.12706981754469	3.17601239449358	3.27968148371367	3.52310839351503	1.23101253044805	0.0687394020286579	0.343020415612588
Merged-chr10-68248832-4	chr10	68248309	68249309	+	918.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29917.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.26427276724002	7.17998023194417	6.81700605672608	7.28614524657335	7.55166406608996	7.22409208547528	0.383561717675438	0.146718263522615	0.510992979414413
Merged-chr6-125333661-4	chr6	125333175	125334175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	12335.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	7.34370599057761	7.33964495870892	7.39392279043409	7.52530213230295	7.95943571739491	7.71259129178701	0.572309407193642	0.0174213953750674	0.147355450779068
Merged-chr16-91421707-1	chr16	91421207	91422207	+	541.0	f1_balb.idr	intron (NM_008349, intron 5 of 6)	intron (NM_008349, intron 5 of 6)	15472.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	2.80610298553223	2.27929135172226	2.52483166712751	2.57131643111199	2.35382367640652	2.66358039196102	-0.126078121989798	0.885175700625791	1
Merged-chr11-119040261-3	chr11	119039758	119040758	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013926, intron 2 of 4)	intron (NM_013926, intron 2 of 4)	655.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	4.76475636327148	4.74994226984839	4.82694553531643	4.767733119986	4.71589923869315	4.89176384760519	0.0206118397942977	0.958001940774653	0.990000537228272
Merged-chr14-55758656-4	chr14	55758122	55759122	+	842.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009894)	promoter-TSS (NM_009894)	-198.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	3.85008186123339	3.44266814700418	3.43385752435266	3.7444455346385	3.78877385502968	3.62289463152478	0.426218124730782	0.46783199637239	0.81815434317961
Merged-chr18-49978662-4	chr18	49978137	49979137	+	864.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-790.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.89875107947463	3.42547069278642	3.81280753907389	3.59673966829982	3.27581967044576	3.52035584038095	-0.917009061937809	0.132834255347292	0.487694104062442
Merged-chr5-64210917-4	chr5	64210378	64211378	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RSINE1|SINE|B4	-19479.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.31192926353964	7.557619361622	7.41742927317415	7.53894460766665	7.56887596062425	7.35439185953343	0.0904872241264422	0.699156066782272	0.920515737149593
Merged-chr13-10253241-4	chr13	10252757	10253757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	107546.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	3.57853363725715	3.26278364132496	3.45461306197707	3.51114450565459	3.453961560728	3.87579253762813	0.64772738769785	0.285931035479076	0.683376406725347
Merged-chr17-5596690-4	chr17	5596210	5597210	+	814.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104110.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.53991748664085	5.74286972571672	5.5431686506482	4.95554421932304	5.11471093789565	5.46575923817407	-0.845607512999537	0.0190630058584083	0.156491179110738
Merged-chr6-116634612-2	chr6	116634112	116635112	+	710.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178045, exon 11 of 11)	3' UTR (NM_178045, exon 11 of 11)	-5613.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	3.21050336244116	2.84444311980854	3.17351437297763	3.39001012837556	3.17969399735674	3.18762381973431	0.727935651786249	0.284191579142047	0.681902442968206
Merged-chr14-64652504-4	chr14	64652018	64653018	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081177)	promoter-TSS (NM_001081177)	-13.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	6.1746659715988	6.3589445458079	6.27515493176859	6.20291467542449	6.33913143412128	6.25469858959626	-0.00388461977494946	0.988808210789212	0.997426973334006
Merged-chr3-105721259-2	chr3	105720740	105721740	+	922.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175398)	TTS (NM_175398)	15782.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	4.45533045474737	4.5657213000908	4.16313868227968	4.1024521593381	4.30199384968752	4.08149312801199	-0.64230052154244	0.18092149893006	0.56305619831836
Merged-chr3-153902995-4	chr3	153902502	153903502	+	798.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031870, intron 1 of 19)	RMER16_Mm|LTR|ERVK	1889.0	NM_001282054	55993.0	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	3.95284676335769	3.78365344961713	4.12478109429976	3.73402497365726	3.67583662237089	4.1048861231665	-0.350537486038182	0.517798933431254	0.844737935317774
Merged-chr11-83532481-2	chr11	83531981	83532981	+	852.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1963.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	3.22403786905014	3.32052787196951	3.21955664963476	3.36189559196376	2.97119434622002	3.23375445760693	-0.256420737246984	0.694850304639976	0.919217788511748
Merged-chr11-102317772-10	chr11	102317307	102318307	+	941.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001044383)	promoter-TSS (NM_001044383)	-520.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	6.99861124915994	6.73450655714659	6.99500671836902	7.12917244581676	6.51130899156855	7.15244119149027	0.0673084154590374	0.821794017735726	0.958023303204974
Merged-chr16-94371634-4	chr16	94371091	94372091	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019543)	promoter-TSS (NM_019543)	-576.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	5.42961833252378	5.39651809470182	5.24940275075825	5.53609987493526	5.40544898568837	5.02521791583957	-0.0288519429845531	0.936677470731704	0.986037792257163
Merged-chr17-27018034-4	chr17	27017559	27018559	+	784.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001251881)	promoter-TSS (NM_001251881)	24.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	5.55489990837822	6.01763165767668	5.99300474945343	5.7787557695024	6.02578762499706	5.56464772897184	-0.0947553922624038	0.783768255696892	0.947284320139836
Merged-chr14-44091724-4	chr14	44091210	44092210	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-10944.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	4.22101019394096	4.33424869476228	4.43144007065102	4.27187661987007	4.32223690285744	4.139860039042	-0.196811856183662	0.667122937151425	0.908550135279124
Merged-chr1-74295693-4	chr1	74295197	74296197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	8639.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	6.19193580145405	6.07366399683785	6.16741276898563	5.51295218296354	5.27782201977694	5.61670089454591	-1.23354433566315	8.81421276341224e-05	0.00255366648892063
Merged-chr3-53462435-2	chr3	53461935	53462935	+	813.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172501, exon 2 of 7)	exon (NM_172501, exon 2 of 7)	823.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	7.01185365810706	7.10318207502646	7.22640988307204	7.19495318118519	7.17264434441442	7.23760903674383	0.133184950130278	0.57204080851622	0.869773807126863
Merged-chr10-42276785-4	chr10	42276288	42277288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019740)	promoter-TSS (NM_019740)	-46.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	9.31682832918817	9.36112441834052	8.88072829467209	8.99897637495452	9.20157196267249	8.82835647558175	-0.253065283695994	0.284833982113379	0.682457480121006
Merged-chr11-74505431-6	chr11	74504900	74505900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	MER2|DNA|TcMar-Tigger	84758.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	6.24096805580397	6.27124236792085	6.35809845736405	6.52441358412089	6.66706610930116	6.16929360563437	0.321187163904221	0.267513289328098	0.664772601194969
Merged-chr1-161875907-4	chr1	161875398	161876398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	784.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	7.29832573977195	7.782797801237	7.18068360987039	7.43629350702168	7.73294210382146	6.97419597748276	-0.0384655295137656	0.901602577461191	0.977313609147635
Merged-chr15-79546696-4	chr15	79546212	79547212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	29.0	NM_001040187	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	8.55445871595712	8.81692233482309	8.36188017561717	8.43757494633707	8.69549409036469	8.45244467112387	-0.0820378238208643	0.723615576180953	0.929080851011554
Merged-chr11-107242019-3	chr11	107241567	107242567	+	809.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	PB1D10|SINE|Alu	-52686.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	3.12942388430427	2.96567768816884	3.0579153520084	3.01035571638812	2.95852801924985	3.01129282103727	-0.279531595392245	0.674412819621624	0.911852710156386
Merged-chr5-139379193-4	chr5	139378692	139379692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	-1447.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	6.83131041972709	6.71789577516706	6.65875404770697	6.80727587748208	6.57183975191108	6.26260239372472	-0.26112338989258	0.355658868648828	0.742489966989298
Merged-chr17-42938928-4	chr17	42938441	42939441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62517.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.06044958283181	5.7600304614862	6.02916664105958	6.72237839209273	6.02960304423231	6.2620402540145	0.702891186807558	0.0356700692690711	0.232059040167386
Merged-chr12-113131023-1	chr12	113130523	113131523	+	541.0	f1_c57bl6.idr	intron (NM_001346696, intron 13 of 19)	intron (NM_001346696, intron 13 of 19)	-9213.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	4.42619072204912	4.0063013905538	4.45738111526504	4.67939500673366	4.21154084597854	4.52421063335252	0.447097647168379	0.360181228049451	0.746468395814061
Merged-chr2-147013438-4	chr2	147012885	147013885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	CpG	386.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	8.3662712178438	8.70379856196621	8.42007574748181	8.38293566079262	8.53535140605874	8.34032034814325	-0.115556854247927	0.600542341207867	0.881706603672466
Merged-chr12-108766298-1	chr12	108765798	108766798	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-27013.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	7.25681324092683	7.68671905149822	7.54983202952565	7.4059700695687	7.66735512403066	7.59717572492143	0.0764639264750257	0.759232176514827	0.940311236380535
Merged-chr6-97417110-4	chr6	97416615	97417615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	42171.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.89240053359421	4.90464013333516	5.3266730889272	4.98196534803271	4.96443188769415	4.90485315573656	-0.195247188373674	0.617966684324617	0.889069638978004
Merged-chr10-63385797-2	chr10	63385297	63386297	+	773.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	-766.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	3.21572041487482	3.04130750785722	3.43920609018651	3.45197861335405	3.37804677473211	3.23012257830905	0.499846976369931	0.434865591612433	0.798660466628143
Merged-chr12-40569265-4	chr12	40568765	40569765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123212.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.09596500313105	6.46614933679778	5.86507186220767	5.64904315156999	5.33736107463216	5.92696518665291	-0.93277115225874	0.00865581981752187	0.0911687918197924
Merged-chr12-99974605-2	chr12	99974097	99975097	+	711.0	f0_balb.idr|f0_c57.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10098.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.11927757520511	5.85805255140213	5.75682925100732	5.74144352173343	6.02306856411681	6.08192176068777	0.0481560227651122	0.879381199521602	0.972083703102674
Merged-chr4-150542899-2	chr4	150542399	150543399	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	109275.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	2.82840104323763	3.23133632393073	3.23351952915383	3.07007257295655	3.03843744938537	3.19356935064373	-0.0461215389337031	0.946743725403515	0.988007649185823
Merged-chr15-59795886-4	chr15	59795391	59796391	+	876.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045076)	promoter-TSS (NR_045076)	-932.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.01488919489209	3.182286490867	3.09355236054215	2.999027842662	2.8240148107505	3.27668078034385	-0.269823752193955	0.697603234088673	0.920011490392658
Merged-chr9-123479360-2	chr9	123478860	123479860	+	596.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013860, exon 1 of 8)	exon (NM_013860, exon 1 of 8)	659.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	5.98091382757047	6.38200436536856	6.29684667391772	6.34246175179991	6.44152474616233	6.74278048984478	0.463244773438869	0.122912794027511	0.469100941508007
Merged-chr18-10609674-1	chr18	10609174	10610174	+	1000.0	f0_balb.idr	intron (NM_001081222, intron 1 of 10)	CpG	678.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	7.98613571971672	8.33672582009985	8.05467976918623	7.96946672956423	7.80727685831323	7.71654291359776	-0.427034287612878	0.0661072998017554	0.335569558437315
Merged-chr2-180921004-4	chr2	180920505	180921505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-69.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	7.88674913349388	7.98455415738952	7.44963043329206	7.83317122696448	7.36882640561306	7.36069907451149	-0.372758072382659	0.176898312011859	0.557523640928096
Merged-chr15-77798152-4	chr15	77797632	77798632	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41122.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	4.41406757406439	4.74716188484667	4.47434475119354	4.45863144929007	4.64905235604703	4.49853233824847	-0.0392458114978137	0.928346512072439	0.983802612059568
Merged-chr7-67225064-4	chr7	67224568	67225568	+	781.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357962)	TTS (NM_001357962)	2452.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.83862170973328	3.67458476073671	3.86607260881094	3.61920934962289	3.73484630914877	3.62689271001094	-0.421891038634869	0.435394894017315	0.799001771897859
Merged-chr11-54127091-1	chr11	54126591	54127591	+	548.0	f0_balb.idr	intron (NM_011031, intron 13 of 15)	intron (NM_011031, intron 13 of 15)	26167.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	2.65237034747238	2.60600603933955	2.73090234565964	2.54862359998141	2.41337500930743	2.42184512010181	-1.20157755766201	0.133275439262647	1
Merged-chr7-25794957-4	chr7	25794452	25795452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6219.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.82149314417955	5.03261751265251	4.96210872876907	4.6019644851625	4.91255784876683	5.0264064426704	-0.188982546314698	0.63678508706119	0.89723915288953
Merged-chr14-46882786-4	chr14	46882299	46883299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028966)	promoter-TSS (NM_028966)	-166.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	7.82602802594156	7.91627375545168	7.59358385723424	7.62093781330052	7.87427285162915	7.82064575522428	-0.0205140832701702	0.92977046273167	0.984253185265936
Merged-chr10-44457344-4	chr10	44456818	44457818	+	986.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	1430.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.00558765177248	6.14391435982836	6.25011669340801	6.05662482936955	5.90686230942453	6.10616033481057	-0.19300768106125	0.509117413279511	0.840256821151416
Merged-chr11-118166409-2	chr11	118165909	118166909	+	814.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 12 of 12)	intron (NM_001112700, intron 12 of 12)	-37190.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	2.90870503009913	2.92723526257473	3.31965516913981	2.81322132924921	3.04637749043901	3.06553508375457	-0.357462299422595	0.61578025607783	0.88811014762473
Merged-chr2-129594381-1	chr2	129593881	129594881	+	1000.0	f0_balb.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	-1081.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.76026229341978	8.90547650140305	8.68332113797606	8.79782421309654	9.21833063471978	8.93408153359508	0.288856570008723	0.192842689910858	0.579887049333333
Merged-chr7-19675193-2	chr7	19674693	19675693	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309799, intron 1 of 3)	(TTCA)n|Simple_repeat|Simple_repeat	-1273.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	7.20235944798503	7.33556052043811	7.02449469163117	7.09200443911955	7.22309806995897	6.98544753909867	-0.136167624686499	0.583338996708806	0.87400013033251
Merged-chr5-72817858-4	chr5	72817337	72818337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	50611.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.73731036517894	5.62276379946436	5.12471421646067	5.21972310320485	5.16451225854971	5.32739455645183	-0.588970545169389	0.11141439861405	0.445871935353881
Merged-chr3-89777035-2	chr3	89776535	89777535	+	702.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 3 of 12)	intron (NM_027315, intron 3 of 12)	3426.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	2.52881970144946	2.42504106458661	2.66775734732714	2.43875098812226	2.43893326674879	2.42777798370999	-0.636247784207398	0.427576317625047	1
Merged-chr8-104376945-4	chr8	104376403	104377403	+	833.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC|LINE|L1	18904.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	6.14586242932693	6.35085894307652	6.02914342001157	6.03218499989923	6.3615814770364	6.24294482459155	0.0559807059991697	0.850785298064183	0.964981271430729
Merged-chr12-117728498-4	chr12	117728004	117729004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 20 of 27)	intron (NM_175930, intron 20 of 27)	-115357.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	5.44136556391576	5.54747681114941	5.19973486822411	5.88492104119254	5.68445556284467	5.26589013543587	0.438832579042817	0.231165997879142	0.626971555511186
Merged-chr1-172352582-4	chr1	172352072	172353072	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	11362.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	5.29994380957611	5.57429683967954	5.82310371824784	5.31513349554621	5.28043629036574	5.53542935423365	-0.383407821716499	0.282852107434608	0.68075273348424
Merged-chr3-139075471-4	chr3	139074950	139075950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040690)	promoter-TSS (NM_001040690)	-249.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	6.80153079365243	6.66595811036117	6.67198340224753	6.1916017429222	6.24512302791887	6.7609923504291	-0.485708863594874	0.100026063097272	0.421843317698826
Merged-chr5-65107966-3	chr5	65107476	65108476	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	CpG	408.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	8.40635357086425	8.02682054387081	8.00681670640134	8.45117127413852	8.09907630089466	8.17652652514281	0.122455080245645	0.61487308830367	0.887639829057119
Merged-chr13-21812352-4	chr13	21811834	21812834	+	914.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175657)	TTS (NM_175657)	550.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	4.77579669102975	4.39174823147294	4.97443611594642	4.96061529637041	5.14315910100242	5.23071907501279	0.856304815180167	0.0403147909858784	0.250094171949077
Merged-chr13-110357182-4	chr13	110356676	110357676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177713)	promoter-TSS (NM_177713)	-4.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	3.70156480980874	3.38743451826606	4.05830463302695	3.54319177001333	3.29158195609881	3.76728487507108	-0.665042905279383	0.292683116926634	0.689883481862591
Merged-chr11-55204889-3	chr11	55204357	55205357	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	517.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	6.90609578703337	7.34238049731318	7.04817450723766	7.14019796603261	6.99751713906099	6.53667759875351	-0.287904409685414	0.325646660383962	0.718159390122652
Merged-chr10-58324225-2	chr10	58323725	58324725	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026148, intron 1 of 9)	Charlie1|DNA|hAT-Charlie	678.0	NM_026148	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.26896475621305	5.58212849472503	5.72752481549285	5.7130710737161	5.63124173516368	5.713149528499	0.284962844559432	0.395821128978827	0.773144649859171
Merged-chr4-147340455-2	chr4	147339955	147340955	+	779.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B3|SINE|B2	164589.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	2.79625913086771	3.00765743994311	2.98455331980352	2.95236531570455	3.0621091532786	3.22687102895979	0.688547385172738	0.316799536427228	0.710777474639496
Merged-chr7-128068041-4	chr7	128067532	128068532	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 2 of 29)	intron (NM_008401, intron 2 of 29)	5392.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.03606717213497	4.86739222722648	5.54663130573714	4.94626313254498	5.06978336545909	5.22141092163735	-0.185671928974779	0.649612985595588	0.902251703507615
Merged-chr11-87030542-2	chr11	87030042	87031042	+	768.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-36780.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.36764673858314	5.19263130222749	5.16859516216415	4.93261368413116	4.91776571561516	5.23240942700205	-0.470404601277725	0.203276843466057	0.593152860426278
Merged-chr5-64342830-1	chr5	64342330	64343330	+	742.666687	f1_balb.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112473.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.43011976717242	7.48005795895354	7.41265314351308	6.82855692787485	7.32864543934869	7.45961587188789	-0.310975519976182	0.247244275160949	0.644145276280485
Merged-chr15-73624900-2	chr15	73624400	73625400	+	793.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033219)	promoter-TSS (NM_001033219)	-156.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.72665145085407	3.43288488531663	4.10185009973675	3.66432632726164	3.47414166757916	4.04165765563907	-0.109693660341284	0.859266902561043	0.967267211164924
Merged-chr7-142094436-5	chr7	142093985	142094985	+	860.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008748, intron 1 of 6)	CpG	799.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	5.2707564168208	4.81998472589154	4.17590916061361	4.62464221522474	4.13463897627103	4.19562261917098	-1.18215570828266	0.0312192862428553	0.213942873471875
Merged-chr5-31526966-6	chr5	31526422	31527422	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009206)	promoter-TSS (NM_009206)	-73.0	NM_001359154	20534.0	Mm.352407	NM_009206	ENSMUSG00000029141	Slc4a1ap	kanadaptin	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding	5.96214977339911	6.18895882271888	6.15333495572847	6.37108623149745	6.22138973549513	6.14945527439934	0.252131407858299	0.379830627082093	0.762097533655971
Merged-chr9-86592243-3	chr9	86591756	86592756	+	878.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20203.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	4.37111211471536	4.30883039877237	4.16963326094607	3.69162005929393	3.63110876324443	3.95090836801208	-1.65227917824396	0.00142531830367301	0.0238004987782509
Merged-chr16-20610724-4	chr16	20610225	20611225	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	36.0	NM_001357404	208624.0	Mm.24950	NM_145939	ENSMUSG00000033809	Alg3	D16Ertd36e|not	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)	protein-coding	6.34507540336738	6.79295457681387	6.56677422982809	6.93930047596512	7.06287401162135	6.51722111089827	0.448762758388293	0.13212255437281	0.486188104304079
Merged-chr13-60707005-2	chr13	60706505	60707505	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	79359.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.68468761776408	5.95070717499058	5.74326775490925	5.08317109646406	5.32075611205424	5.45065812128591	-0.971478244272439	0.00441770192240265	0.0561117602746573
Merged-chr4-58546273-4	chr4	58545793	58546793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	7000.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.22993773860604	4.2964957770026	4.2244873251316	5.08729512132142	4.78057909481375	5.05725348239995	1.74970437445227	5.44597547944353e-05	0.00169528143544159
Merged-chr1-86430221-4	chr1	86429724	86430724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3895.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.04532544753157	3.89784697373742	4.24357848654628	3.72192482053005	3.76294549341173	4.34969159772862	-0.284482708341601	0.608710065196164	0.885006356798728
Merged-chr13-114387297-2	chr13	114386797	114387797	+	558.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 1 of 4)	intron (NM_010887, intron 1 of 4)	797.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	4.50392049650625	4.6724410596065	4.88121403125361	4.79410569863618	4.80022962652215	4.55721108281154	0.102413622358452	0.806823037575133	0.954382544255315
Merged-chr17-27027602-4	chr17	27027105	27028105	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1022.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	6.7674010354463	6.94726240988503	7.05415709342424	7.23018266932728	7.35845827715143	6.71203003015112	0.329587959310283	0.24750998735748	0.644473996371299
Merged-chr2-167957967-2	chr2	167957467	167958467	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	25640.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.59304575901166	5.99964120230674	5.85479867333493	5.82485343124138	5.84116697497698	5.79145678512477	-0.0121949491831833	0.969348011442111	0.993120354697684
Merged-chr10-39421005-4	chr10	39420505	39421505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	51206.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.28841027716927	7.27488648988037	6.951487083606	7.30337960494678	7.45510775693057	6.99528711415137	0.129303520048224	0.625512093569721	0.892513881101067
Merged-chr9-37047260-3	chr9	37046761	37047761	+	590.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	100061.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	2.67499456753157	2.77446674260767	2.63436896419009	2.36216936782361	2.34754455808918	2.30878345424251	-2.39751970384299	0.00752585304610071	1
Merged-chr19-16138798-2	chr19	16138298	16139298	+	775.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	5967.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.84337216583365	4.850222156825	4.94355387468107	4.89996084413531	4.66910220223961	4.62236440518362	-0.314034140384773	0.429065407663039	0.795570481157701
Merged-chr5-41187476-3	chr5	41186975	41187975	+	846.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	520216.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.73501097585618	2.91186512223011	3.00860014327777	3.18430195718413	3.06236206739799	3.3066725771139	1.3839468632946	0.0473082489046831	0.275498261520412
Merged-chr9-22070886-4	chr9	22070361	22071361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-141.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	7.40177511556115	7.56112791209052	7.29883605082858	7.31974724097021	7.15415720833177	7.45311776815244	-0.181205969641869	0.453316612525176	0.809745581877009
Merged-chr12-111436007-2	chr12	111435507	111436507	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6654.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.90345552644845	6.69389811637976	6.64598450947036	6.75068557512514	6.83112583984573	7.07776173799193	0.201941441894537	0.44428042714352	0.804143628616024
Merged-chr14-30043513-4	chr14	30043011	30044011	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 45 of 46)	intron (NM_001083616, intron 45 of 46)	20878.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	3.03870462841862	2.86640269304092	2.79442356452659	3.04630988069404	2.99945425157177	3.33725180926975	1.01485519921804	0.152466029394115	0.520574204916928
Merged-chr19-3375507-2	chr19	3375007	3376007	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 13 of 18)	B1_Mur4|SINE|Alu	-13350.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	4.81843533932241	5.51065402586376	5.63450255364277	5.43601092737649	5.48227073622022	5.92733632036341	0.498852455687135	0.231272091220816	0.627115927646807
Merged-chr4-109204547-3	chr4	109204041	109205041	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2269.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.47026829775093	4.37835005943396	4.96648070176082	4.15128842672194	4.07334426092017	4.51041819659457	-0.951075689879123	0.0538616017411292	0.297655241097533
Merged-chr11-32682571-4	chr11	32682105	32683105	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 2 of 12)	intron (NM_001271347, intron 2 of 12)	40050.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.95097039168024	4.55868264805887	4.16650273498961	4.45071916063873	4.02016525025386	4.13901156161659	-0.111437680744117	0.831879929042046	0.960522107234272
Merged-chr9-25151887-4	chr9	25151374	25152374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-93.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	8.26427304523403	8.42296041242545	7.99016616639057	8.35163364739342	8.214194616733	8.18285804828484	0.0105972195793878	0.962909088928397	0.991016963580472
Merged-chr3-108258873-2	chr3	108258373	108259373	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1947.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	3.79598424622715	3.80619447846085	3.8414276655152	4.03214811056644	4.12793416560816	4.19676734544641	0.926340861024308	0.0622403833401147	0.32412678789362
Merged-chr3-144604370-3	chr3	144603856	144604856	+	838.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C2|LTR|ERVL	33929.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.02445809371913	3.09941782740212	3.28605222582859	3.07721885716626	3.20246745319933	3.30238631606251	0.254468577459236	0.693810632404436	0.919057471959059
Merged-chr16-97431469-4	chr16	97430965	97431965	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019517, intron 8 of 8)	ID_B1|SINE|B4	31440.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	2.48132088241553	2.62032189749726	2.62852252623002	2.80201024038443	2.51094881469345	2.88474168726254	0.87768042521124	0.262659627753389	0.660662685713974
Merged-chr14-66189037-4	chr14	66188537	66189537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 4 of 30)	intron (NM_001162366, intron 4 of 30)	24787.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.71714510710814	5.82408962254422	5.85056721092127	6.15464053700135	6.07645275518636	6.16058949003295	0.580960577225324	0.0464619329911544	0.272755998081786
Merged-chr7-80143526-4	chr7	80143027	80144027	+	957.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28177.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	5.99120474253347	6.12339603027907	6.03999225850856	5.84392101090544	6.03908618906848	5.78466483579554	-0.260108100724145	0.384940956941655	0.766070343813858
Merged-chr9-106908915-3	chr9	106908429	106909429	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 46 of 52)	intron (NM_153413, intron 46 of 52)	-16991.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	3.49813529485188	3.79804949259235	3.69496133857195	5.08903736568232	5.0326772974991	4.18828243150184	3.33078023014887	3.08627596231563e-08	2.52014573378174e-06
Merged-chr10-9707203-4	chr10	9706658	9707658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22436.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	5.80525740083068	5.5685394757566	5.66019916334978	5.36693879923327	5.473525260528	5.86914327315317	-0.19776778183339	0.564665253414459	0.866552552710737
Merged-chr12-3780841-4	chr12	3780332	3781332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26148.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.02987383274794	6.90228080513316	7.07513553481877	7.02337124628306	7.26331058334661	6.50497886958534	-0.028622608520569	0.922776961360372	0.982621045978137
Merged-chr9-9238999-4	chr9	9238502	9239502	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027823)	promoter-TSS (NM_027823)	11.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	4.91660730053964	4.70241579365556	4.90178715379647	4.94839933524303	4.81590873972249	4.81800534220056	0.0493725079830211	0.899168533616971	0.976510508522132
Merged-chr11-83550536-4	chr11	83550047	83551047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEa|LINE|L1	-20029.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	6.05393529523488	5.82196771573769	5.90706633756509	6.07862398087848	6.07672854422228	6.25071101801365	0.344342781078332	0.242841567726868	0.640049450979325
Merged-chr17-56939367-3	chr17	56938865	56939865	+	863.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-3977.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.95596274014231	3.9801667961923	3.87392763573227	3.83034244873702	3.72822316510817	3.8418451980689	-0.454368000946978	0.374217079450581	0.757933699438553
Merged-chr13-37622806-4	chr13	37622277	37623277	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203261.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.92690545626708	4.30414202997885	4.18499649066899	4.1157156018637	3.87934911120457	3.86099889691011	-0.556879268582958	0.276453144820008	0.673866688369557
Merged-chr8-77422689-2	chr8	77422189	77423189	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94367.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	6.80632569871163	6.81777604459905	6.26675674933214	6.73302274703286	6.70337382072944	6.19194287269974	-0.141568273908328	0.656782408767018	0.904693205515276
Merged-chr6-42355151-2	chr6	42354651	42355651	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	5323.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	4.2835607671837	4.03065912277414	4.5296302034931	3.89888702010541	3.84908621156562	4.28009411525251	-0.779972698226273	0.133774915596861	0.48906330450363
Merged-chr2-166655920-3	chr2	166655421	166656421	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2a|LINE|L2	57911.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.82585024047775	4.7112394029367	4.85902515420985	5.14486909830646	4.94059535595753	4.92466935859045	0.468186190096593	0.222416244306234	0.617394127326327
Merged-chr12-117385508-4	chr12	117385005	117386005	+	958.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48493.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	4.09079744491485	4.5925527285004	4.23325662790442	3.83957487564012	3.8546856467135	4.06835462695124	-1.18071093775753	0.0213778306583453	0.168757189775713
Merged-chr7-127025357-4	chr7	127024858	127025858	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010772, exon 2 of 5)	exon (NM_010772, exon 2 of 5)	1121.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	7.47104456251075	7.83584813875753	7.39592988156241	7.10111188034384	7.37605418427518	7.00664693559789	-0.602149323884396	0.0233721303784832	0.179043673369336
Merged-chr7-38001701-2	chr7	38001203	38002203	+	825.916626	f0_balb.idr|f1_balb.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17849.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.04971325812175	3.92669879994513	4.04408799121158	3.77615804408317	3.44397943370869	3.82362535216611	-1.05173925504251	0.0547519118135527	0.300534143293231
Merged-chr1-191280899-4	chr1	191280410	191281410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37208.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	7.81630045724896	7.69172466938405	7.13719261470694	6.69697392850958	6.87762824432515	6.61074325319238	-1.27503017563505	8.24104876749413e-06	0.000338627746096618
Merged-chr19-37307422-3	chr19	37306919	37307919	+	621.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031156, intron 10 of 23)	intron (NM_031156, intron 10 of 23)	23194.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	5.46838143085586	5.71171738960329	5.56887442455219	5.84136448295151	5.84420816010631	5.86750707746245	0.47478341487056	0.129152651011112	0.480635707559937
Merged-chr13-81132899-4	chr13	81132388	81133388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	168814.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.05874664119335	7.90285917796579	7.61861458322145	8.02380054466235	8.14159447760961	7.54244553037334	0.0827958223302272	0.757198440945829	0.939819795914786
Merged-chr1-91053929-4	chr1	91053421	91054421	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	477.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.17682382401103	7.21338780192717	7.49998909376234	7.52004585459443	7.69373844732232	7.50766367005907	0.417474912549322	0.0815815967544498	0.377796165557895
Merged-chr7-116457911-4	chr7	116457431	116458431	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14473.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	7.11256078012472	7.47764294945585	7.05581873397969	6.65557120605531	6.98041917470955	6.81456985319611	-0.618720400081488	0.0225639122126293	0.174878726470609
Merged-chr11-5446256-2	chr11	5445756	5446756	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1409.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	3.82129005321426	3.98266925837448	4.29026815456275	3.92984534636509	4.01332290318102	3.7431616667049	-0.389117465991152	0.465944424102636	0.817266460944204
Merged-chr6-97469330-2	chr6	97468827	97469827	+	991.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-10041.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.24629349502838	5.46828801489538	5.13451372048131	5.78240894706438	5.73153877910216	5.77180013976568	0.866459669068749	0.00994190885481296	0.100053985485157
Merged-chr13-55437406-4	chr13	55436914	55437914	+	837.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	-7658.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	4.20315848695225	4.37305855691388	4.92177732127687	5.00168589464085	5.01829897236082	4.73069304175618	0.940045895470045	0.0421374334587576	0.257020187437544
Merged-chr4-40233478-3	chr4	40232974	40233974	+	716.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 2 of 17)	BGLII|LTR|ERVK	6351.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	3.64048513956431	3.57266054231082	3.79980493390173	3.43021502400691	3.44843927686375	3.56924500889121	-0.682800791072945	0.229059749598252	0.624547300541785
Merged-chr17-56607548-2	chr17	56607048	56608048	+	643.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153152)	TTS (NM_153152)	2223.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	2.84673265744636	2.7698453605023	3.04613714792381	2.74769785227161	2.91495054524384	3.27807874697429	0.490550686851378	0.504707264916849	0.837806481766929
Merged-chr5-100820911-4	chr5	100820418	100821418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	17.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	4.89169124212998	5.19657524690915	4.96639354328739	5.1936719889131	4.83276239138479	4.67593510155802	-0.227241494782233	0.579382916653801	0.87250443698034
Merged-chr11-118289275-2	chr11	118288775	118289775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 1 of 20)	intron (NM_001033528, intron 1 of 20)	969.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	4.96391545142748	4.89896262550552	4.3528688687102	4.82586615087001	4.87807227124505	4.37370344505456	-0.125950862725977	0.790633546900469	0.949549282047892
Merged-chr1-43503790-2	chr1	43503290	43504290	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	58039.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.31849843925648	4.59639600372887	4.12445258257215	4.8775100243432	4.55205997593855	4.73647326934489	0.858922394211662	0.064085697594584	0.329862519040475
Merged-chr11-23974259-4	chr11	23973762	23974762	+	832.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-78992.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	2.91603888656624	2.69832391949451	3.28172492009156	2.59777394438329	2.71475360237688	3.1449351341342	-0.685207025871128	0.398084494384041	0.774826072718299
Merged-chr15-94592258-7	chr15	94591778	94592778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2454.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	6.77635582036617	6.6980859679978	6.92768950057091	6.83629566159623	6.853855928993	6.98572901505349	0.14275523012744	0.569137143692982	0.8688875602138
Merged-chr17-47768866-4	chr17	47768367	47769367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-16877.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	8.05233848706694	8.11557258167626	7.95131912703603	8.22612934304974	8.48441797961493	7.99959280747954	0.304157030020812	0.194090887435556	0.581296921414137
Merged-chr7-19268113-2	chr7	19267613	19268613	+	682.025024	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	PB1D9|SINE|Alu	3741.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	5.978348232185	5.73868349661819	6.02617489012696	6.30146590992686	6.17516953706682	6.2944074140517	0.58430588551404	0.0461605638656532	0.271750969161828
Merged-chr1-131463979-2	chr1	131463479	131464479	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	ID_B1|SINE|B4	63382.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.58375081825161	5.37275496599059	5.65640296905892	5.37568739753017	5.42413591875883	5.38089334797297	-0.270692478035325	0.418762705659368	0.788755230826602
Merged-chr10-20076960-4	chr10	20076450	20077450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71970.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.82085182161159	6.89404336523685	6.39675842735493	5.9258808906776	6.0546114538272	5.89443492836484	-1.26003377668264	2.30787960990904e-05	0.00082595288852177
Merged-chr1-55055532-4	chr1	55055077	55056077	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	2807.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	3.16276271378325	3.19081291960315	3.44903805122176	3.75441084191936	3.80584357498015	3.73392390817379	1.92015163094444	0.00146421979201264	0.0242940778571861
Merged-chr19-32182032-4	chr19	32181526	32182526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	28987.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.43623894856358	7.44297121392837	6.70303756028648	6.23153804306518	6.10300341151264	6.12344436362075	-1.72434055297243	2.21508174236267e-08	1.86174264261125e-06
Merged-chr6-122631890-1	chr6	122631390	122632390	+	576.0	f0_c57.idr	Intergenic	Intergenic	5466.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	3.21767027596317	3.2626798258875	3.50066334471948	3.5253523263371	3.34934860284355	3.76826687167068	0.846737353397553	0.168692978104683	0.545365036993336
Merged-chr14-79502412-2	chr14	79501912	79502912	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	Lx9|LINE|L1	-13262.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.4845817838497	3.81757055572948	3.47204037561765	3.48779503114076	3.40279416680695	3.59841346055934	-0.410725972515411	0.48542864725425	0.827466595462693
Merged-chr2-170195737-3	chr2	170195220	170196220	+	588.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53045.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.19835651278225	3.05716387839626	3.0701367793738	3.50609047035791	3.02618689244651	3.26409712615537	0.696792765319026	0.298187843983638	0.694997737442112
Merged-chr12-75694615-4	chr12	75694124	75695124	+	861.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-25087.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	6.02304313142958	5.56225288891688	5.44171940136917	5.7353525951167	5.27315963933866	5.47485998180422	-0.379675598372673	0.306730060022431	0.702981130880964
Merged-chr1-75141104-3	chr1	75140571	75141571	+	842.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026977, intron 3 of 9)	intron (NM_026977, intron 3 of 9)	620.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	6.00739249924497	6.14442739056254	6.42707646410427	6.1314336110258	6.16505066325447	6.07437388975262	-0.112810670257184	0.703127967729446	0.922108924938678
Merged-chr7-128089346-4	chr7	128088838	128089838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 12 of 29)	L1M2|LINE|L1	26698.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	6.27251815434252	6.40923936435685	6.12040841950837	6.20111129385041	6.57120702403094	6.20341373241033	0.114017762177973	0.701401297154422	0.921305535334185
Merged-chr19-29241727-4	chr19	29241220	29242220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10083.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	3.21147274400589	3.41284231136342	3.08677727013352	3.21390323594501	3.28946152375508	3.50148924092776	0.341246464634108	0.596247692969003	0.879909387076956
Merged-chr4-156234850-4	chr4	156234392	156235392	+	894.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198305)	promoter-TSS (NM_198305)	-35.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	3.66755725869103	3.46310757806834	3.43252321895739	3.43621392300424	3.38534095701131	3.13983113314578	-0.740306136629251	0.236392912530943	0.632720263621021
Merged-chr3-135688017-2	chr3	135687517	135688517	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	3530.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.07913739854798	3.68486527552607	4.00793374001709	3.87204083030456	3.90017591690674	4.3749491876255	0.376740353772556	0.489712003927887	0.82988037764672
Merged-chr1-184622708-4	chr1	184622205	184623205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65014.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.42840221851625	6.11763907773993	6.38981649325679	6.12484210233855	5.86161584058411	5.73491321880051	-0.670449857799564	0.0297572931262922	0.207774175249855
Merged-chr3-54668926-4	chr3	54668416	54669416	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23899.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	4.75435462622154	5.13205884270688	5.43503699864863	5.1053631774295	5.35881089084575	5.06507324184255	0.131423465767167	0.746544210891787	0.936300236930265
Merged-chr4-32545643-3	chr4	32545076	32546076	+	952.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	MTE2b|LTR|ERVL-MaLR	26086.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	2.84720145527081	2.62025970896757	2.66133800880237	2.74656053162933	2.48372916084146	2.79775753262613	-0.194285340001638	0.802322823127195	1
Merged-chr12-99967776-2	chr12	99967276	99968276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	3277.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.69585406593003	6.82189447769374	6.55358190281554	6.78190217941572	6.72315636854452	6.44562954071541	-0.0553640692610069	0.837397865713878	0.962133986386607
Merged-chr7-119871960-2	chr7	119871460	119872460	+	691.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	23498.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	3.11501055310431	3.18244133969748	3.23392677718739	3.13568960129564	3.35840353271334	3.4131862956423	0.544786110929386	0.386773914288	0.767209905576392
Merged-chr2-39011466-4	chr2	39010955	39011955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	3316.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	4.95707853880292	5.05204381449274	5.26524068565966	5.07737948983653	5.25723906524149	4.92010214847535	0.0316220445804692	0.933528754087484	0.985524379838506
Merged-chr17-34114996-2	chr17	34114496	34115496	+	889.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 7 of 13)	non-coding (NR_037970, exon 7 of 13)	4904.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	3.940495286805	3.43283147269306	3.80563352377272	3.76495389692798	3.68577206483467	4.01707715971466	0.258263741094288	0.65387608580444	0.903558174250044
Merged-chr13-51996412-4	chr13	51995914	51996914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-100327.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.71744685348843	3.46532085675542	3.56578430146206	3.46301150539115	3.295537857897	3.23383238481585	-0.949896434863131	0.117006753969623	0.4567645612395
Merged-chr3-87500312-4	chr3	87499815	87500815	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113238, exon 12 of 12)	3' UTR (NM_001113238, exon 12 of 12)	-25263.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.71705026137502	5.64603713730608	5.67941488953916	4.94440433070444	4.78093715585197	4.85039032632254	-1.67876050482778	2.09183838762001e-06	0.000103853036131913
Merged-chr4-40239072-4	chr4	40238466	40239466	+	761.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	859.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	5.83305340965078	5.97228349995962	6.16258453039504	6.2369178457895	6.12392581318873	6.28217119464717	0.383245793030399	0.191195815212632	0.577822466760773
Merged-chr17-34239321-3	chr17	34238835	34239835	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	430.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	4.95904071695843	4.77458235355482	5.32930726516161	5.9088360279089	6.13218785723912	6.28253491312225	2.07290611921127	7.4455066305787e-09	6.96879320266808e-07
Merged-chr10-8772637-4	chr10	8772143	8773143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	113427.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.47727536530186	5.4982836595448	5.23668340916055	5.53447299324952	5.19879410326188	5.70576708297589	0.12851010323989	0.722068357606972	0.928665377061702
Merged-chr4-45546099-4	chr4	45545591	45546591	+	866.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-15263.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.61477103075893	2.66897478086495	2.77058137645326	2.73293934310897	2.61685909500779	2.65830620968986	-0.0764029556589459	0.918007412787751	1
Merged-chr2-38471922-2	chr2	38471422	38472422	+	611.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-39775.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	2.99563524974883	2.79817671891072	2.91165775101166	2.62597325643639	2.6868534830119	3.0412138602358	-0.564232812703815	0.452576640312558	0.809456767794566
Merged-chr4-33291009-2	chr4	33290509	33291509	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19302.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.65611601666326	3.69621800649702	3.77107891845433	3.78101295974806	3.76173630598602	4.11932680772181	0.588867416496114	0.272759529664517	0.669951714189667
Merged-chr15-74926071-3	chr15	74925564	74926564	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28987.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.03603931657361	5.86553094913369	5.83198312413837	6.8472796460178	7.49840733832544	6.39672267484418	1.7536967657236	8.96572416173276e-07	4.93725993414599e-05
Merged-chr2-27328369-3	chr2	27327873	27328873	+	725.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-81070.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	5.52950850776457	5.62860667091894	5.71858277494257	5.13993669441473	4.92194892884282	5.43722855362515	-0.900948761711607	0.0125071103152656	0.11765924254448
Merged-chr3-103859662-4	chr3	103859154	103860154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-141.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	7.66599108593176	7.61908920244827	7.45491867857211	7.64145565690561	7.99629898801621	7.78619662758517	0.336694160845936	0.152295613064133	0.520263755512759
Merged-chr4-53806616-3	chr4	53806116	53807116	+	796.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19429.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	2.45820223792129	2.62273545503475	2.79725479255299	2.17809987649242	2.27939017930486	2.31310417766146	-2.60465644664689	0.00649973792795643	1
Merged-chr2-164832937-4	chr2	164832474	164833474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	102.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	7.62604698211165	8.01032136249976	7.55584248071993	7.68835312810648	8.03299902681805	7.40950873091642	-0.00940495134651094	0.972990996720997	0.993909316613403
Merged-chr14-54517539-4	chr14	54517047	54518047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013768)	promoter-TSS (NM_013768)	-77.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	4.67363716589499	4.86581527513348	5.04337398346219	4.95491511521283	5.02175321357648	4.61223736070881	0.0551071755342377	0.893674853746966	0.975265071347118
Merged-chr16-24711134-3	chr16	24710626	24711626	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	RMER6C|LTR|ERVK	-10729.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	2.66996874159787	2.85254732696186	2.96381991841417	2.90651647436342	2.84290216656931	2.79487042290782	0.0983950528035694	0.891230079879055	0.974793897524426
Merged-chr7-19266141-4	chr7	19265646	19266646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	5708.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	7.14815959570059	7.23533641622388	6.97083778825938	7.28851599844243	7.58159375470347	6.8949916742015	0.25531628263568	0.364837494651148	0.750028369485675
Merged-chr6-108065330-4	chr6	108064823	108065823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	278.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	6.13802821788152	6.16973661336112	6.16302369435406	6.49502240201902	6.34188882772105	6.15844848975053	0.314064155609678	0.265276292427718	0.663013396735394
Merged-chr7-43608490-2	chr7	43607990	43608990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1321.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	4.45947212163181	4.24518547661454	4.78749751466073	4.77637502433294	4.51616099922537	4.5030567517125	0.246624080407037	0.587735838663037	0.876060470835927
Merged-chr6-29276038-1	chr6	29275538	29276538	+	545.0	f1_balb.idr	TTS (NM_023516)	TTS (NM_023516)	3412.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	2.84289978031335	2.63948953486832	2.84230694606731	2.7568218440659	2.56371063880617	2.91488719247761	-0.153269733215163	0.838908046739338	0.962619500530269
Merged-chr12-86832373-4	chr12	86831880	86832880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52434.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.95886946408789	5.88185461841172	5.47727983092755	5.59884182834525	5.5254579407843	5.47915626774234	-0.488304766322652	0.144396516059029	0.50717662222064
Merged-chr4-120887896-4	chr4	120887403	120888403	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 5 of 7)	intron (NM_182929, intron 5 of 7)	33104.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.56790110848072	3.60811336906518	3.39294610909295	3.37271295735721	3.35584508127671	3.34879295979114	-0.653347070911312	0.268702583700197	0.665938064708585
Merged-chr10-128211143-2	chr10	128210643	128211643	+	686.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_025716, exon 2 of 2)	exon (NM_025716, exon 2 of 2)	651.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	3.93003627054474	3.85347595368023	3.62891900966384	4.02973176123661	3.61382202103597	3.91400316303106	0.136555340590788	0.805199494639116	0.953798874874682
Merged-chr13-98262247-2	chr13	98261747	98262747	+	946.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271390)	promoter-TSS (NM_001271390)	745.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	6.90571350093753	7.01103285190027	6.84278617851937	7.02074919684195	7.33560185371234	6.63782384846918	0.182679728106066	0.524903562551036	0.84884700169621
Merged-chr8-119876809-4	chr8	119876311	119877311	+	956.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146219, exon 5 of 5)	exon (NM_146219, exon 5 of 5)	14506.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	3.13614998324757	2.86882869014602	3.20619307335612	3.1269898433604	2.81976283420379	3.22243215079001	-0.0557360951957226	0.937037988158341	0.986037792257163
Merged-chr16-12469798-3	chr16	12469294	12470294	+	835.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-341596.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.56223762747487	3.08952213898551	3.25850562983126	3.36215790557096	3.13916900842584	3.21280398439855	-0.326844841189949	0.619412153740191	0.88977205849657
Merged-chr13-52980324-4	chr13	52979818	52980818	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017373, intron 1 of 1)	CpG	721.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	4.13671103436514	3.6319042174004	3.87816420527414	4.37716976501847	3.75143848182731	3.897194483446	0.404958556486026	0.482894611815021	0.825867492178998
Merged-chr3-16007647-2	chr3	16007147	16008147	+	776.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-1315.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	5.52184570681162	5.6735179098279	5.98498767786717	5.64935893957866	5.78257557681615	6.48207316313689	0.498054704402013	0.190582659410639	0.576988383226797
Merged-chr11-120939685-2	chr11	120939185	120940185	+	872.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6813.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.53555482659894	3.41977688524985	3.41043529874853	3.41529877699099	3.08998742448963	3.48161906771292	-0.485289299463228	0.437258494069631	0.799848369002863
Merged-chr4-88409473-4	chr4	88408963	88409963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 43 of 43)	intron (NM_001081184, intron 43 of 43)	29463.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.19989956944803	5.24054850323588	5.08933051851306	5.112425181078	5.05775051923953	4.97415614540171	-0.273437644920535	0.447553312631745	0.806548958484392
Merged-chr7-99468656-8	chr7	99468102	99469102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028145, exon 2 of 7)	exon (NM_028145, exon 2 of 7)	2598.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	7.8074935648175	7.36334673381851	7.21216964845164	7.83758358202671	7.21535461419045	7.08517192717183	-0.0928263545795874	0.768361613370552	0.942871018290895
Merged-chr17-65841016-2	chr17	65840516	65841516	+	675.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104465, exon 19 of 19)	non-coding (NR_104465, exon 19 of 19)	43907.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	2.13051739522764	2.22313130259026	2.47539295577108	2.40016537060919	2.24927284286043	2.4875126624337	0.654755482866901	0.453346224124547	1
Merged-chr16-36670015-1	chr16	36669515	36670515	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-3938.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.36018114633244	6.16421346521285	5.88139266705443	6.51252537668034	6.57361986198132	6.39346586288675	0.553723316441468	0.0600715555927111	0.317280309620306
Merged-chr12-85110819-4	chr12	85110283	85111283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	-50.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	8.25122776361006	8.65576813422815	8.42914315533729	8.19214311418107	8.36007737032283	8.2592106570155	-0.257083025157089	0.25230780481934	0.649788845937901
Merged-chr11-120492752-4	chr11	120492267	120493267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013770, intron 1 of 10)	intron (NM_013770, intron 1 of 10)	930.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	6.73830223872587	6.92977117424752	6.83739873455939	6.72556772956988	6.9501448962919	6.79071859445056	-0.0111645884488849	0.964989099294859	0.991722509406863
Merged-chr11-90491855-2	chr11	90491355	90492355	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-100938.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	3.43628254485524	3.63928008822428	3.73492623686564	3.67209052533753	4.10348483260479	3.90480293704457	1.00504811747815	0.0741541255722584	0.358212858090942
Merged-chr15-36578092-1	chr15	36577592	36578592	+	743.0	f0_balb.idr	Intergenic	L1MB8|LINE|L1	-22519.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	3.35119450114787	3.4436435071098	3.602068951394	3.5843418032388	3.88160099656967	3.56499115288233	0.815140560614944	0.160876079771197	0.533611450434575
Merged-chr16-32190371-4	chr16	32189889	32190889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	10589.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	7.27485621154658	6.99369504813271	7.51589882695367	7.24112987004108	7.43813733863168	7.58213064878965	0.227625502925892	0.389430280936554	0.769119665294917
Merged-chr11-46818451-1	chr11	46817951	46818951	+	797.0	f1_c57bl6.idr	intron (NM_178759, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	7652.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.44613858287051	6.1061162727904	6.04300612987746	6.73756754784306	6.33009072989011	5.69716453523241	0.194877618215227	0.601265831748095	0.881898948141997
Merged-chr7-25127401-1	chr7	25126901	25127901	+	563.0	f1_balb.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	5059.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	3.28921005208654	3.07165639153015	3.32500556271675	3.7086902376294	2.98498896990743	3.75992646230092	1.11358275673428	0.115429854376186	0.453656933645588
Merged-chr4-141872992-4	chr4	141872410	141873410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2010.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.17923663054684	7.10340985817022	7.19307881100736	7.59355488528953	7.42010365459492	7.49215874719824	0.511792889067178	0.0254929525903642	0.189279578594091
Merged-chr3-127300052-3	chr3	127299562	127300562	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	108996.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.57377526766605	3.39714448433736	3.9077215545684	3.72553788572528	4.02759673753081	3.67579544918428	0.63069334238953	0.282229527967116	0.680175941698657
Merged-chr13-9099866-3	chr13	9099366	9100366	+	720.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5985.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.9962605203361	4.76665408690226	4.76632533510107	5.1068049391977	4.99628110555504	5.02087316436802	0.411530958027674	0.280957522045575	0.679136434778149
Merged-chr5-92098491-4	chr5	92097946	92098946	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14702.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	6.29855746317405	6.43366816785822	6.36466564026961	6.61793522271698	6.45526235744866	6.42446763963612	0.220754308142738	0.410630567708723	0.78349619906958
Merged-chr16-95827611-4	chr16	95827121	95828121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	71092.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.70611073675982	5.3858839508994	5.61323726375241	5.96062843589226	5.35253507819994	5.80469145444904	0.278304557518549	0.440574821491937	0.801886710894642
Merged-chr1-7088100-2	chr1	7087600	7088600	+	915.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	-820.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	7.35886367949464	7.85789165315665	7.34381707349939	7.38531110840344	7.77645250131495	7.05754569887065	-0.142604452855814	0.637055649272902	0.897280781950183
Merged-chr6-99521317-5	chr6	99520808	99521808	+	889.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347345)	promoter-TSS (NM_001347345)	-315.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.40252776741898	4.2770437587161	4.30214019394306	4.36861874737108	4.31021605971945	4.4135716608441	0.0824773793220556	0.852130098267262	0.96531854415899
Merged-chr8-84971789-2	chr8	84971289	84972289	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	2167.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	1.81048765025004	1.91154971482144	1.91311654870598	2.11386846879325	2.03254540403969	2.19252130629075	1.99278992923378	0.0463322135729121	1
Merged-chr11-99171980-2	chr11	99171447	99172447	+	807.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16870.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	3.32266604951294	3.14207231264026	3.13968397311425	3.41469340662173	3.83357016671675	3.81977274226834	1.88679604703095	0.00332735310070929	0.0454692719336211
Merged-chr1-171276540-3	chr1	171276037	171277037	+	961.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008911)	TTS (NM_008911)	4649.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	3.37673907120048	3.11657270283936	3.18951639343219	2.83664904322301	2.71218757387379	3.02829415172151	-1.84441442799079	0.0115994199329354	0.111631336315023
Merged-chr12-83860908-4	chr12	83860391	83861391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 2 of 12)	MTEa|LTR|ERVL-MaLR	15921.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	5.69857049612602	6.03432389509933	6.22392125227959	6.13639275791412	6.33365097520872	6.20382222598164	0.403483704645266	0.193994829142821	0.581296310830689
Merged-chr3-51483996-4	chr3	51483497	51484497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016858)	promoter-TSS (NM_016858)	31.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	7.04823944941876	7.11819704361831	7.05899265716228	6.86011520939715	6.9600940788975	6.89856895384228	-0.255898036969364	0.283850778965922	0.681497406474779
Merged-chr2-167348688-6	chr2	167348141	167349141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	537.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.68787405471113	7.08522986192145	7.09214658102335	7.75179806810416	7.08602761511466	6.85717281304685	-0.043450572511386	0.898308667103898	0.976312272366525
Merged-chr17-67351537-4	chr17	67351052	67352052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2907.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.35011259271408	8.68195721426594	8.21202341300157	8.27806896467682	8.67643993019365	8.1013310518192	-0.0732366622455487	0.780583837975644	0.946078518476608
Merged-chr6-124278413-3	chr6	124277922	124278922	+	753.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-26229.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	6.34850124403387	6.36260577397588	6.75536415600795	6.18847666803953	6.38181543850947	6.16709018788511	-0.386293855655451	0.189077943387274	0.574693071061086
Merged-chr2-163658485-4	chr2	163658006	163659006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164053)	promoter-TSS (NM_001164053)	48.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	6.0817529017003	6.14224414356658	5.8664858045039	5.88060630525062	5.92279128428403	5.7721643616968	-0.311651099011762	0.299982745054305	0.69670818797216
Merged-chr2-170325425-4	chr2	170324929	170325929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30932.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.68487963587901	6.45426582797755	6.46880284734559	6.5944329980863	6.71246624681621	6.92040749736096	0.316542964478009	0.24136193744727	0.638385260200477
Merged-chr11-117109345-1	chr11	117108845	117109845	+	614.0	f0_balb.idr	Intergenic	Intergenic	-5827.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.60134141371901	6.46441133064824	6.46502347683731	6.26038904512057	6.39760753852944	6.27495433976636	-0.321403887879875	0.232441354883148	0.628761339174128
Merged-chr14-120275633-4	chr14	120275134	120276134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207515)	promoter-TSS (NM_207515)	-35.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	7.215261734502	7.19654795462322	6.95917970019151	7.25047371300789	7.40621583949117	6.89880707457513	0.11842206440473	0.655483537152334	0.904286601743332
Merged-chr1-72104237-4	chr1	72103743	72104743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99048.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	3.90648667489963	3.7660019904525	3.79699472555322	3.74597210952519	3.48206442956047	3.48442955507699	-0.844158488762838	0.130679109762829	0.483186228268893
Merged-chr15-66799941-2	chr15	66799441	66800441	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 2 of 7)	intron (NM_001029841, intron 2 of 7)	31888.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.71772797920351	3.62661018301436	3.86513704331263	3.73121925166629	3.78948797959259	3.62676354595621	-0.0368454753108175	0.945681956452622	0.98796006280508
Merged-chr8-46852670-6	chr8	46852167	46853167	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112922.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.32358934620244	7.39203813579037	7.14145924995475	6.99840269936034	7.32632375714497	6.92550202661333	-0.281695113084265	0.275696345139996	0.673224988596003
Merged-chr6-38743173-2	chr6	38742673	38743673	+	708.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001294144, exon 6 of 15)	exon (NM_001294144, exon 6 of 15)	80104.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.50516542272377	3.4407092373656	3.56667616501675	3.20411881536553	3.38715913719705	3.63596937919818	-0.327765799244035	0.588008441723473	0.876182349656829
Merged-chr5-124530084-3	chr5	124529556	124530556	+	728.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	1335.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	3.85006244044953	3.89675983788831	3.73286988993895	3.77960636297838	3.62842202053189	3.58421501749849	-0.548473274938842	0.30920162077991	0.704802606494279
Merged-chr10-25284632-4	chr10	25284137	25285137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	14526.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	7.38292657621953	7.62770372769819	7.34228276037085	7.09003091050214	7.67702593639218	6.86793380615547	-0.273673811339389	0.366615310824144	0.751704072179051
Merged-chr15-50698283-3	chr15	50697789	50698789	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190760.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.24242553607264	6.01053760224498	5.45465261434256	5.84450430003132	6.03556898205509	5.58418807524898	-0.195871148624813	0.594849660695763	0.87924603206665
Merged-chr18-40459120-1	chr18	40458620	40459620	+	701.0	f0_c57.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	200759.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.2290991469332	2.33484377849651	2.22048054222856	2.40703860846696	2.29054653655385	2.55110089744433	1.00593277478372	0.240055876438966	1
Merged-chr18-10725545-4	chr18	10725036	10726036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144860)	promoter-TSS (NM_144860)	-89.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	7.10266440737911	6.79957455364525	6.76375314948107	7.23006449762701	6.52625784466863	7.05000014889359	0.0973029167828987	0.749336136033526	0.937281259219783
Merged-chr11-62879367-4	chr11	62878845	62879845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356521)	promoter-TSS (NM_001356521)	-110.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	7.79977649701072	8.21849369533487	7.50243313986195	7.84287609086597	8.01368928127952	7.26606822311994	-0.181604110481296	0.556878425723513	0.863862861865473
Merged-chr18-69510957-1	chr18	69510457	69511457	+	602.0	f0_balb.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	164797.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.21773930574033	3.35575563698543	3.31100963254117	3.37384553016249	3.32586037256787	3.43761181244447	0.318092664858422	0.596634605097737	0.880020560968805
Merged-chr12-103426535-2	chr12	103426035	103427035	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-668.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	3.66816181168985	3.97216523247853	3.86462695274951	3.78514055773091	3.9098341546119	3.9337156306892	0.110982968920043	0.832527403542994	0.960616839788396
Merged-chr14-19778114-1	chr14	19777614	19778614	+	811.0	f0_balb.idr	exon (NM_008695, exon 5 of 21)	exon (NM_008695, exon 5 of 21)	26857.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.77886844930543	4.69331163323511	4.97842804679576	4.52009709019078	4.31112661453706	4.29252440075615	-1.06206404681741	0.0140632590778847	0.127206833498492
Merged-chr1-91040585-2	chr1	91040085	91041085	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-12859.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.37542061301448	4.42653407167122	4.59662508178636	4.47767392787032	4.20775522511675	4.77190533799272	0.0728229795932857	0.87478167090875	0.970780587478737
Merged-chr13-52061639-4	chr13	52061132	52062132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35109.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.4405574711208	6.6465902080891	7.10678639021293	6.7000864865431	6.6234058769003	6.87324676835576	-0.032043324727441	0.914506639213802	0.980912729144991
Merged-chr11-85525825-3	chr11	85525337	85526337	+	956.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172673.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	7.7438649968884	7.97168382386453	7.22844183427725	6.99957469115564	7.28087943198349	6.54963938056324	-1.03399280645639	0.00132342905365058	0.0224413867324552
Merged-chr5-21372674-4	chr5	21372176	21373176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	3.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	6.90687411817024	6.82602923639361	6.26522644554219	7.13378642881735	7.54314741621723	6.79014602020577	0.755557392073865	0.0216338492528533	0.17021375617691
Merged-chr18-54883112-2	chr18	54882612	54883612	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107068.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.53448164898795	3.41666072393361	3.70737648352161	3.37179261684929	2.98766286716218	3.30360398819312	-1.30082219528291	0.0458588064848461	0.270606309480964
Merged-chr5-142931303-2	chr5	142930803	142931803	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24549.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.0160982569407	5.14248650100755	5.76183262309031	5.82292816368785	5.76307100250288	5.93700676713525	0.950128010173977	0.0117441249582642	0.112521378257466
Merged-chr3-27689597-4	chr3	27689096	27690096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	G-rich|Low_complexity|Low_complexity	20856.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	8.1289246298315	8.240643632192	7.77281137836675	7.82315615719479	8.18247458511259	7.78484221895066	-0.168792569157811	0.506395637755977	0.83842879061576
Merged-chr18-34851297-2	chr18	34850797	34851797	+	664.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9910.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	3.35292544890491	3.11511585440709	3.1745260470369	3.49673004894437	3.56939187215761	3.69020906573251	1.41199374533241	0.022717013380198	0.175754277019016
Merged-chr6-98091770-4	chr6	98091272	98092272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99989.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.65637909372323	4.09575657168333	3.73829844768739	3.7850995747174	3.71358700802806	3.52753557336483	-0.541102500652032	0.342768962125806	0.731651201867618
Merged-chr8-108662959-3	chr8	108662456	108663456	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51688.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.19728313181976	2.25972361790135	2.36851002551111	2.10345273168946	2.15802098468693	2.18576422777786	-0.907489344314195	0.302906844768863	1
Merged-chr2-11705303-4	chr2	11704790	11705790	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133836)	promoter-TSS (NM_133836)	-3.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	7.00784817275427	7.16219883520394	6.83884154410029	6.81673028064667	6.9662619148688	6.89729431169899	-0.184566919476833	0.464569987759979	0.816459397744841
Merged-chr9-78479750-2	chr9	78479250	78480250	+	939.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_010106, exon 5 of 8)	exon (NM_010106, exon 5 of 8)	1974.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	4.99948402005042	4.66652197408844	4.51923630009713	4.72225368906674	4.59625274477624	5.00948064967962	0.0555653445960773	0.898451944310062	0.976355113798855
Merged-chr5-77460487-4	chr5	77459973	77460973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	4.60489081802942	4.28350183901856	4.2162658995223	4.28485400861989	4.46432390234273	4.28563664923065	-0.0860547959372916	0.853208393392955	0.965625657940466
Merged-chr8-88663502-2	chr8	88663002	88664002	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	16155.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	4.44400380203903	4.72942830548187	4.34787803430279	4.70971970993746	4.39650281533815	4.71259371297317	0.19603295921303	0.661762567321594	0.906495637422278
Merged-chr17-28510629-4	chr17	28510145	28511145	+	976.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20216.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	5.51455338260091	5.25166921526621	5.00837031579846	5.11360995437193	4.98117304992148	5.07424133816744	-0.476737089340635	0.206006890055977	0.596596871355204
Merged-chr7-80829782-4	chr7	80829337	80830337	+	731.6875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-26506.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.84479371423826	6.67093290803048	6.13742008873014	6.05376896868397	6.28792225729827	5.72484201762752	-0.884230215860838	0.0102422403517933	0.102100914722896
Merged-chr2-170130671-3	chr2	170130172	170131172	+	930.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	CpG	548.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.69261739473681	7.49037275328727	7.51353723927616	7.78641421683788	7.6945229029146	7.73849829610368	0.244070218352745	0.272171580097809	0.66953956602346
Merged-chr6-86525483-2	chr6	86524982	86525982	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	707.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	8.22779342290998	8.55640715934031	8.2369810437431	8.32577112097559	8.32957036877598	8.24111919937013	-0.0739068973218462	0.736768883491024	0.933284983163126
Merged-chr5-72166966-2	chr5	72166466	72167466	+	633.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178599, intron 1 of 4)	intron (NM_178599, intron 1 of 4)	1223.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	4.65819458197867	5.12361942333469	4.96035094089496	4.9567227680277	5.15885104714997	4.83775870050535	0.152805129638447	0.707136158522464	0.923220759150193
Merged-chr11-83663742-4	chr11	83663229	83664229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1145.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	8.20262267109319	8.12337189536751	7.71049282508955	7.89078128587926	8.0291397502902	7.64303137517933	-0.236147712598538	0.35057154421526	0.738596934645462
Merged-chr7-80783336-2	chr7	80782834	80783834	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	19997.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.30075964727391	6.16088845727098	6.3399370647933	6.28149998409286	6.12383411777104	6.24337134517283	-0.0858296947296716	0.758381812832779	0.940121252394213
Merged-chr2-181365992-3	chr2	181365511	181366511	+	986.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	588.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	6.86022565446652	7.13396768094618	6.93863627896801	6.76506410928477	6.88839359343531	6.88344572314893	-0.213720062077326	0.396118108553678	0.773332291042782
Merged-chr11-22656777-4	chr11	22656306	22657306	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144523.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	5.80474419324223	5.83696723490458	5.38505862037197	6.11673969032566	5.87494806577094	5.72466470213242	0.383363174899489	0.256815190222558	0.653908575783795
Merged-chr7-34196264-1	chr7	34195764	34196764	+	1000.0	f0_balb.idr	intron (NM_026549, intron 2 of 6)	CpG	406.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	7.35139894011189	7.83094523236014	7.37435504392801	7.33237243515593	7.38837235370703	7.27167627477615	-0.310793916702334	0.227643888994485	0.622808210644087
Merged-chr13-59556416-2	chr13	59555916	59556916	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048008, intron 1 of 17)	intron (NM_001048008, intron 1 of 17)	506.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	4.39473937957051	4.37529354015817	4.33709530057361	4.31944791649717	3.8567096026832	4.31709399128803	-0.536546391969732	0.272198119886235	0.66953956602346
Merged-chr1-173879026-1	chr1	173878526	173879526	+	602.5	f0_balb.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1161.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	7.76919007140986	8.12053352423137	7.16527338596231	7.04729627168367	7.33643356528972	6.71645404592431	-1.00445885098357	0.00232102734783477	0.0346231702328139
Merged-chr7-127303227-3	chr7	127302731	127303731	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 7 of 30)	ORR1G|LTR|ERVL-MaLR	6971.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	3.03699060179189	2.9268455764134	3.11715605470855	3.15018506885075	3.03476025686877	3.29981128097608	0.597673518567436	0.365642308341821	0.75071889665134
Merged-chr14-76415550-9	chr14	76415033	76416033	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207652)	promoter-TSS (NM_207652)	-288.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	6.04417996183242	5.86443937504938	5.87646014396682	5.70941887837956	5.35405651080277	5.16239292060728	-0.912278043430899	0.00830728071207408	0.0883815641849201
Merged-chr11-101172630-2	chr11	101172130	101173130	+	584.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007721)	TTS (NM_007721)	-1258.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	5.7505614511302	5.9683752117604	6.19880494310063	5.71897575188091	6.26196222542132	6.38780968497227	0.29872943930617	0.383681158371817	0.764948857386881
Merged-chr8-84065754-2	chr8	84065254	84066254	+	977.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	6.6164288548345	7.04044725475676	6.17611281787787	6.68799202451377	7.24022128053895	6.76165038487854	0.397025517976517	0.246653878871053	0.643775908190167
Merged-chr14-118692507-2	chr14	118692007	118693007	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	13712.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.57804678806933	4.37898372625696	4.35113802460403	5.4132537374054	5.02033757997531	5.11206881301613	1.69254240960806	5.68274322037623e-05	0.00175389353813451
Merged-chr12-24975609-4	chr12	24975112	24976112	+	934.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	680.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	5.16687399235361	5.49536878862566	6.11798931064379	6.22099967856189	5.96410356324731	5.71932072290438	0.607170441078009	0.127807615862154	0.478024726959056
Merged-chr19-6297828-4	chr19	6297315	6298315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 4 of 4)	intron (NM_010119, intron 4 of 4)	-8642.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	8.26532066915061	8.12328309466085	8.07340963860549	8.14982105497751	8.54502488433356	8.03376241680611	0.157304627085777	0.51491139861566	0.843311862380436
Merged-chr11-94993470-4	chr11	94992965	94993965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	2253.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	5.82764642275149	6.10935795320189	6.31012410928381	5.91032943282051	6.21882541247331	6.15429437323462	0.0257132349162931	0.934684476837785	0.985727536128156
Merged-chr17-25006654-1	chr17	25006154	25007154	+	711.0	f0_balb.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	8576.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	3.67300774173529	3.07519730227066	3.36450245904492	2.9479290178925	3.0172811968502	3.48871907494902	-0.895767369650257	0.217587012577037	0.611614495364718
Merged-chr7-45515663-4	chr7	45515149	45516149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045555, intron 4 of 13)	intron (NM_001045555, intron 4 of 13)	1047.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	3.60434369507776	3.46507299663285	3.56442952917706	3.05565832559203	3.34083466745523	3.30708693864739	-1.17936809291428	0.0621351092798076	0.323850886166195
Merged-chr3-9753846-3	chr3	9753338	9754338	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	79841.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.2549341824698	4.26569904753286	4.05344619927501	3.83557937726814	3.80071235830341	3.69942077678708	-1.26713218161939	0.0134030255418139	0.123200242899754
Merged-chr4-141016222-3	chr4	141015730	141016730	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008546)	TTS (NM_008546)	5593.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	5.8886744405725	5.94347160841437	5.85506891919339	5.79311948575072	6.06815325692053	5.35946703058832	-0.187409732588404	0.590189264875792	0.87713052060241
Merged-chr3-90514973-4	chr3	90514545	90515545	+	850.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	610.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	4.65403418409688	4.77083095161996	4.64840902604713	4.78406757545862	4.37822170290767	4.86544255538596	-0.0314972602360679	0.941814637062817	0.987058762320129
Merged-chr8-120736298-4	chr8	120735802	120736802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008320)	promoter-TSS (NM_008320)	-56.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.15190648671477	6.88159799054161	7.13923542196301	7.33672998684687	7.12901266410574	6.82166896052652	0.0900677006616149	0.737741248112329	0.933858424870961
Merged-chr8-106059423-4	chr8	106058904	106059904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-199.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	7.61284112465118	7.72227877188826	7.67354684935543	7.56881842979445	7.64331979791775	7.54169967925116	-0.119557405557671	0.584007055604995	0.874371294853541
Merged-chr19-6046495-4	chr19	6045991	6046991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-85.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	9.02169897939319	9.22504899753917	8.66951588492125	8.9458800552817	9.36380578453202	8.60374689335596	0.0270452105288717	0.922306747519023	0.982542868764899
Merged-chr2-33131126-6	chr2	33130626	33131626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	310.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	5.16665962019292	4.77686763884251	5.18136793854697	5.19187283954993	5.10895101250206	5.18067134209523	0.231459088366561	0.541595213056957	0.856866097372447
Merged-chr10-100032776-4	chr10	100032272	100033272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	16951.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	6.86786133352539	7.28343660733241	6.73892473009592	6.60583883045526	6.95669914865158	6.62997306498534	-0.376926979314878	0.197653172885426	0.585805105555675
Merged-chr12-69455767-4	chr12	69455262	69456262	+	961.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19788.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.40559440056414	4.31481575289545	4.468505097825	4.06660443562177	4.10252573038977	3.98802029611075	-0.928421399851513	0.047713817060139	0.276666988845996
Merged-chr11-52001485-2	chr11	52000985	52001985	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	6.27914479853298	6.74113150282169	6.43658282101886	6.27927590779144	6.7047885397858	6.12273286192329	-0.155994450471848	0.626869356805215	0.892975730763041
Merged-chr16-52145016-4	chr16	52144500	52145500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	113451.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.86293104344622	3.74508635428906	3.71888762001071	3.97702701000311	3.80007754831366	3.68032681353446	0.155480539581463	0.770221131722287	0.943392092118189
Merged-chr13-49216122-4	chr13	49215637	49216637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026738)	promoter-TSS (NM_026738)	-111.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	8.79463568871991	8.68516362975971	8.26634890179105	8.42304997688411	8.50758584006049	8.33452979675927	-0.252644827298658	0.281879629961661	0.679908771156903
Merged-chr15-99260120-4	chr15	99259641	99260641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-8180.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	4.42273616863658	4.05658537452075	4.53315422661087	4.26586916460744	4.55878917209967	4.43618591477853	0.21713882090425	0.64645190061282	0.901004518361667
Merged-chr3-84648343-3	chr3	84647832	84648832	+	566.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17860.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.37273248499467	4.58229763990726	4.44081676641388	4.86675613136762	4.9497001507107	4.55462096753748	0.809489522592977	0.0581988657025992	0.311742707440574
Merged-chr8-46732759-4	chr8	46732231	46733231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6784.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	5.96652236887536	6.06152168990014	6.11835257632829	6.25689043443064	6.66742806890404	6.38143605277861	0.682127423574984	0.0196219686792108	0.159395572754775
Merged-chr7-35751731-2	chr7	35751231	35752231	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 2 of 18)	RSINE1|SINE|B4	2723.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	3.28339836063178	4.04181021342867	3.76433657792908	3.51471690210803	3.26850130110615	3.63010636143749	-0.899368643726869	0.166618462668043	0.54204906915129
Merged-chr1-132007523-4	chr1	132007028	132008028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007923)	promoter-TSS (NM_007923)	-77.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	9.17325228819318	9.33757900886765	8.88681289624264	9.06202697841069	9.10454088614971	8.95370672661516	-0.146757488785331	0.500303036525909	0.834978949366358
Merged-chr2-174330845-4	chr2	174330318	174331318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201616, intron 1 of 11)	CpG-8943	729.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	8.41339006618419	8.45130025628425	8.1923156076276	8.56848268149141	8.45933924064467	8.36221974960463	0.147508796308263	0.488337707145429	0.829104641846902
Merged-chr17-5602160-4	chr17	5601666	5602666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	109566.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.86302175763667	5.52012987306918	5.22641487655502	4.92908983447275	4.60812125226504	5.29124093436093	-1.23506682569687	0.00323387561207441	0.0446452292499321
Merged-chr10-117844403-4	chr10	117843905	117844905	+	982.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	1569.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	8.55623862313693	8.68496985545164	8.15554238941986	8.63132068110855	9.11082384466503	8.3519825305918	0.351904623787419	0.211269807463351	0.603801482675221
Merged-chr11-35838551-4	chr11	35838028	35839028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_170779)	TTS (NM_170779)	-4000.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	5.70165840229012	6.07780544148284	5.70038067823716	5.66841147350039	5.57157362645727	5.19545710314699	-0.625443481351733	0.077016380702667	0.365775057391982
Merged-chr4-141858774-4	chr4	141858265	141859265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025994, exon 4 of 4)	3' UTR (NM_025994, exon 4 of 4)	-12406.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	7.29510489450657	7.17108822574006	6.93502630937541	7.42954592779992	7.51506745418863	7.13247347516984	0.338285752526687	0.188760116553444	0.574230468637721
Merged-chr11-80199679-2	chr11	80199179	80200179	+	586.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028019)	TTS (NM_028019)	-9376.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	2.68590888497256	2.61230537159735	2.75199457191684	2.9372664216463	2.53692838332371	2.82586280266221	0.485951940904041	0.524853698004637	0.848833934932934
Merged-chr7-43533194-4	chr7	43532677	43533677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021293)	promoter-TSS (NM_021293)	-6.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	7.77734813466977	8.07481398224811	7.44744530063593	7.82156498779906	8.16173133246122	7.71624280803763	0.171494377871209	0.529853562522454	0.851055038807203
Merged-chr5-43354581-4	chr5	43354154	43355154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119300.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	5.68574157588951	5.69994710009825	5.11918386086339	5.89468071055304	5.53901805119729	5.02624012172389	0.0105712054815338	0.980017901761686	0.995416130723271
Merged-chr9-43306022-4	chr9	43305503	43306503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4760.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	3.10047084892998	3.46799083277489	3.31394889685992	2.96296849217625	3.13652263697598	2.83458632401519	-1.36511471282073	0.061729691849625	0.322395443097137
Merged-chr9-5298260-2	chr9	5297760	5298760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009807)	promoter-TSS (NM_009807)	-257.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	6.62063732540119	6.68493443998688	6.69286211822019	6.29444149431651	6.49667540251394	6.40841416245359	-0.415818824425174	0.113941689598319	0.450859089500984
Merged-chr11-54520481-4	chr11	54519987	54520987	+	723.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.09096094759829	4.22444573636255	4.26553201987883	4.2329909741499	4.34455102831308	4.19637204867242	0.199591096083557	0.665377838429174	0.907812471182624
Merged-chr11-22857664-2	chr11	22857164	22858164	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2071.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.62517057136905	6.55098899581004	6.59631892313012	6.81096981579436	7.0218219960794	7.04826512271138	0.586031689662217	0.0206488136830862	0.164805320378257
Merged-chr4-123283124-3	chr4	123282647	123283647	+	851.1555789999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356377, exon 1 of 14)	5' UTR (NM_001356377, exon 1 of 14)	236.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	6.35156881490147	6.67106205803186	6.33953461291064	6.59342168047887	6.64863275093184	5.90869896767932	-0.0470854404413297	0.887131257393413	0.973818520404627
Merged-chr4-63385511-1	chr4	63385011	63386011	+	740.0	f0_balb.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12729.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.85902314483738	5.10367301376635	5.20350414851264	5.27115260937335	4.86903724878145	4.88783167728183	-0.0713982908007882	0.857088189376711	0.966681760410265
Merged-chr2-31076547-4	chr2	31076056	31077056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	B3A|SINE|B2	19944.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	7.49510231289652	7.55909767967568	7.36896308540354	6.6366516084585	7.27164657410467	7.19946515247665	-0.609106932416313	0.0289228805274368	0.204062955753961
Merged-chr9-62366890-1	chr9	62366390	62367390	+	542.0	f0_balb.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	25547.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.4993828478044	3.43415660807216	3.42631042731849	3.43038030994861	3.18808603082563	3.49722263632283	-0.321907748221898	0.593251618980375	0.878436995890793
Merged-chr10-117794281-2	chr10	117793781	117794781	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1576.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.26141239930941	2.15773033218953	2.42461221829955	2.1468151419911	2.05698883307765	2.17825426875995	-1.14185955631038	0.204843434755977	1
Merged-chr6-56756360-4	chr6	56755828	56756828	+	868.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 15 of 15)	intron (NM_030235, intron 15 of 15)	40885.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	4.05657327170118	3.76096346438778	4.33467010201393	3.81789261250534	3.92168685961651	4.23801686378541	-0.190784838956298	0.724734951158594	0.929459725191008
Merged-chr5-3420328-4	chr5	3419810	3420810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76417.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.40829787658645	7.24058553383316	7.09428263133946	7.15155607940328	7.46038972426296	7.01608269091499	-0.037884997484179	0.884987682903083	0.973538624783452
Merged-chr5-124025316-4	chr5	124024841	124025841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6919.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.417874608445	7.42660341071557	7.36388499742717	7.31232091147105	7.44479872117162	7.21282374751046	-0.104930521161829	0.649028003908678	0.902056560253111
Merged-chr7-118534875-2	chr7	118534375	118535375	+	585.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172476)	TTS (NM_172476)	-1519.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	5.86685077449084	5.87573726615609	5.70501735285253	6.81228243716971	7.05090996709536	6.25141291980208	1.54295554479314	2.34993904962175e-06	0.000115155317103019
Merged-chr11-69070796-4	chr11	69070268	69071268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025838)	promoter-TSS (NM_025838)	-41.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	5.97616366116442	6.15689290228817	5.89312853613646	6.11506735860746	6.18108385383283	6.00346974814714	0.149024569204553	0.612458433433629	0.886746020139708
Merged-chr6-125351497-4	chr6	125351005	125352005	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1782.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	7.73236747265465	7.7536988378281	7.70257219005052	8.26407288126441	8.59280710547901	8.26903002917855	0.932845635588787	2.98814896113821e-05	0.00102432075217936
Merged-chr1-82290957-1	chr1	82290457	82291457	+	586.0	f0_balb.idr	5' UTR (NM_010570, exon 1 of 2)	5' UTR (NM_010570, exon 1 of 2)	482.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	1.72664906268168	1.70575329719764	1.65965126811053	1.94220890695226	1.74669185581239	2.01696298290253	1.89580239629722	0.0774775209289656	1
Merged-chr4-134925637-2	chr4	134925137	134926137	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2012.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	5.54902760253653	5.54049219410957	5.52406985086176	5.84248547243711	5.7864927560068	5.87628571132965	0.538656910822466	0.0813297691642728	0.377301930899911
Merged-chr8-105343439-2	chr8	105342939	105343939	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	4531.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	3.61826191264466	3.77994589958979	4.30856653594468	3.94137419327382	3.93981017924736	3.98829150111821	0.0882548053428864	0.874554570113785	0.970754540400126
Merged-chr11-70021596-4	chr11	70021106	70022106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	CpG	3001.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	3.91410663065005	3.93340111735213	3.95826791547949	4.07609051362097	3.78125056615944	4.24998592632073	0.315592192107953	0.54175872405205	0.856939277940475
Merged-chr10-44686203-4	chr10	44685690	44686690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227442.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.9329527506569	5.5313187691426	5.83655186469781	5.78201685497897	5.92711045608005	5.96843638733695	0.211464382933354	0.508564981235544	0.839818423824339
Merged-chr4-41740335-2	chr4	41739835	41740835	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286542, intron 1 of 1)	intron (NM_001286542, intron 1 of 1)	1024.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	4.1809556213452	4.05576127160087	4.56882350168872	4.15770149921804	4.15848527896132	4.44244949903192	-0.0618481217274096	0.899863138612441	0.976728292075907
Merged-chr15-59810286-2	chr15	59809813	59810813	+	643.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-15354.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.45865709284601	5.41684438418365	5.90422747501928	5.95454735661919	6.18202940645064	6.31070872337057	0.989874609534419	0.00281823051152211	0.0400922079676409
Merged-chr10-96188338-4	chr10	96187878	96188878	+	923.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37829.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.18390648472979	4.49732232483855	4.54011086539678	4.27020287175298	4.1181168173751	4.71625302555246	-0.0811856821229934	0.86846872517291	0.969652123135977
Merged-chr4-149737462-3	chr4	149736972	149737972	+	989.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284270, intron 1 of 10)	intron (NM_001284270, intron 1 of 10)	298.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	5.16522049193105	4.97755962573734	4.74217011516063	5.00736462479881	4.43936155397064	4.6848852857161	-0.560837899199224	0.197694653670242	0.585816672731807
Merged-chr16-16073526-4	chr16	16073019	16074019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	73332.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	6.62138010791033	7.07461195674618	6.77893033086111	6.73026232477753	7.21008692717491	6.80668999248199	0.153835908497504	0.59871989485428	0.880808927175713
Merged-chr12-52302397-4	chr12	52301884	52302884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	178225.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.77084132232618	4.94341894693372	4.65820553618334	5.62921686951366	5.51306951553134	5.33013145836654	1.4311174321232	0.000143825776396983	0.00383572282129494
Merged-chr7-88202169-4	chr7	88201671	88202671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75914.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.01022642737387	4.84589263268318	4.82643500863938	4.83707354981435	4.8067818912977	5.13494399273303	0.0513111769541104	0.895856956713545	0.975670463150487
Merged-chr16-52149534-4	chr16	52148987	52149987	+	812.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	117938.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.71256245037486	3.54711055248771	3.65824965677935	3.8091517614368	3.58179927298833	3.56553401671155	0.0598442156062409	0.914292386149968	0.980912729144991
Merged-chr5-21035883-4	chr5	21035384	21036384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-637.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	7.75839209788111	7.50869784398168	7.28982471290052	7.83328145287604	8.20765524497262	7.47410943270084	0.495334426310752	0.0835564212218228	0.382618606407211
Merged-chr1-97663050-4	chr1	97662547	97663547	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1029.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.03343211477415	6.30997528279431	6.23433578895704	5.86332620362711	6.28671445376842	6.31367387859738	-0.0446122414934947	0.884898435914313	0.973538624783452
Merged-chr7-67951012-4	chr7	67950517	67951517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1240.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	4.03971503857269	4.25202646404301	4.12649569823335	3.6980909852029	3.74143696057851	3.9088759041711	-1.12254634417283	0.0283143344957198	0.201469056329729
Merged-chr2-121955942-4	chr2	121955448	121956448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-53.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	7.12812782818825	7.34455707191814	7.22993508742152	7.3649926959865	7.52312235107672	7.2026245712715	0.207670816259896	0.392493011385524	0.771172125304963
Merged-chr13-60738649-4	chr13	60738141	60739141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	47723.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.33043733997308	6.21112089905091	6.06850091223561	5.84122525383989	6.11565933743087	5.91651283156818	-0.41408760189329	0.165196832755981	0.53999992378549
Merged-chr14-120318459-2	chr14	120317959	120318959	+	707.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	12007.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.12341097019987	3.26103426974687	3.13556179901104	3.60036932616411	3.33597037003064	3.6544309570683	1.39630480401704	0.0273246464178138	0.196970387172611
Merged-chr19-11336161-4	chr19	11335708	11336708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025610)	promoter-TSS (NM_001025610)	-62.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	6.57564494344025	6.51552490908723	6.10165964749206	6.4962693121529	6.62308522976837	6.47524527127566	0.176578767601819	0.539349475865497	0.855849708942469
Merged-chr19-11121323-5	chr19	11120813	11121813	+	836.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	9565.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	5.6509425560875	5.50110269124305	6.21487794058532	5.65016354338084	5.46379369819378	6.33733865600097	0.0889366669757028	0.830980557055192	0.960370002015736
Merged-chr2-73455793-4	chr2	73455290	73456290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1901.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.74799033278835	6.10968362340652	6.42861436236315	6.85642069698401	6.62353054357666	6.75828691799147	0.459317171767481	0.129472678767235	0.481288538905651
Merged-chr14-69733696-2	chr14	69733196	69734196	+	726.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_130157, intron 1 of 2)	B3|SINE|B2	862.0	NR_130157	75016.0	Mm.394574	NR_130157	ENSMUSG00000097284	4930480K23Rik	-	RIKEN cDNA 4930480K23 gene	ncRNA	4.90136011982699	5.35869686831413	4.88907522924749	4.93056526604519	5.24493825040079	5.16996224228655	0.093662319741408	0.815047520049685	0.956370078970016
Merged-chr10-23788534-2	chr10	23788034	23789034	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1325.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	4.17839198610487	4.69526643171181	4.64182681695862	4.23034175551553	4.35833946713604	4.14590013961787	-0.69514697231919	0.149503234010319	0.515961080764456
Merged-chr2-71336501-4	chr2	71336001	71337001	+	837.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	31053.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	3.31972828646358	3.50423666737834	3.36389670362315	3.58832988522336	3.54724029137226	3.54794350570872	0.590498036992378	0.308910164032383	0.70476767553933
Merged-chr4-152008890-4	chr4	152008400	152009400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	9.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	7.77284584922907	8.04046464250775	7.79271715530946	7.70633551198083	7.64863465693747	7.60637982646697	-0.320247138583505	0.154445045281942	0.523784932864063
Merged-chr2-90580580-4	chr2	90580102	90581102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	45.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	8.12059248984314	7.73361154906446	7.64798400785245	8.0571279578226	7.58414618462825	7.81149174068969	-0.0359689192549961	0.891315955292501	0.974795270136864
Merged-chr17-46891256-3	chr17	46890705	46891705	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178385, exon 1 of 1)	exon (NM_178385, exon 1 of 1)	584.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	6.92231766458826	7.0631902796777	6.71764865096788	6.7124402430602	6.58550584251035	6.26878055523801	-0.58091165014263	0.0381758618042793	0.241745594293035
Merged-chr14-30618398-2	chr14	30617898	30618898	+	836.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	7810.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.49126319026801	4.59898138197552	4.83401227285154	4.56075952403885	4.23931738794993	4.68204623432852	-0.356567068174584	0.426365746404131	0.793775990271191
Merged-chr1-131975768-4	chr1	131975250	131976250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	5141.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	8.03370600968571	7.85389043630471	7.86399426981509	8.08331964060941	8.139438259254	7.93601924207963	0.196653746239655	0.365063291775957	0.75025511992679
Merged-chr15-86182786-4	chr15	86182282	86183282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2946.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	7.34625873191544	7.56804243014482	7.42524355819044	7.50111481028565	7.52280976288182	7.34039615197877	0.0153061424185011	0.947318206967328	0.988008807662239
Merged-chr1-152560977-4	chr1	152560478	152561478	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64239.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.16761061444495	5.0453653018124	5.03002313106624	5.07741879823754	5.00632885229064	5.46397080577019	0.207277740231243	0.584649616723564	0.874625147126702
Merged-chr12-40447804-1	chr12	40447304	40448304	+	585.0	f0_balb.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1751.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.60651504119619	4.76557465779944	4.46808974956327	4.70893784189817	4.64188247450982	4.39831060003922	-0.0713018851287173	0.868348921406763	0.969642939011354
Merged-chr4-139310027-3	chr4	139309512	139310512	+	562.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	696.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	5.18950939325453	5.62765135501506	5.35178608340012	5.35318029452862	5.04750798666943	5.22422201725218	-0.394146682161164	0.286010507303432	0.68342985932029
Merged-chr18-36746406-2	chr18	36745906	36746906	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011879, intron 2 of 19)	B4A|SINE|B4	1750.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	3.54807111129646	3.75579016962781	3.783973016698	3.75655755087506	4.04581579301672	3.99959142628924	0.783009169368724	0.144344973391994	0.507146496154939
Merged-chr18-36019068-3	chr18	36018567	36019567	+	807.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167891, intron 9 of 9)	intron (NM_001167891, intron 9 of 9)	54237.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	6.38613407867774	6.73017153350896	6.53922101609948	6.19786214523266	6.39727380439902	6.30192923157441	-0.41768465722355	0.137094183775242	0.494723429767125
Merged-chr17-27050658-2	chr17	27050158	27051158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6646.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	3.5595550894081	3.76113333348632	3.76796073617026	3.56625013884022	3.34636699729702	3.93060188748846	-0.240274846077921	0.686824260154028	0.916882288446918
Merged-chr1-151575318-3	chr1	151574797	151575797	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	3924.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.92512507007936	4.84309488909492	4.95574687918714	5.46683136705176	5.25048499184799	5.35371111660401	0.939792367247345	0.00916186966411268	0.0947360321873355
Merged-chr16-70313495-2	chr16	70312995	70313995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028803)	promoter-TSS (NM_028803)	-454.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.94399305456995	6.06012011410252	5.72847623014761	5.94886176615617	6.06125057494565	5.81791884406803	0.0463998684850036	0.880313276756582	0.972493267651278
Merged-chr1-55552630-4	chr1	55552030	55553030	+	778.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	146584.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.14956747089591	5.41548084943666	5.44685417566243	4.61082209716789	4.4139264342499	4.49508577246049	-1.8722206093613	3.44911547250179e-06	0.000159885236900239
Merged-chr9-99009751-4	chr9	99009244	99010244	+	846.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080776, intron 6 of 7)	intron (NM_001080776, intron 6 of 7)	23371.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	5.9138658819294	6.24208753335717	5.20477941616116	5.72267938095397	6.30414822715898	5.0209392854818	-0.125853650616136	0.887961674977543	0.973959149649114
Merged-chr10-127070359-4	chr10	127069861	127070861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	-100.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	6.17229037203704	6.11603931261519	6.13168958579123	6.29440838372687	6.35741891276961	5.68222594292055	0.0360435028342111	0.911923886683079	0.980211734893551
Merged-chr7-5079113-2	chr7	5078613	5079613	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 11 of 11)	intron (NM_001205231, intron 11 of 11)	-1122.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	5.42074138288983	5.03971231356568	5.47855992057662	5.37090345106031	5.19078512777953	5.74430088893347	0.240410487918587	0.530323028572946	0.851072941285938
Merged-chr5-12161417-4	chr5	12160911	12161911	+	958.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-221755.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.32536863237783	4.94326691965906	4.85421973669184	4.8339670435233	4.74789985369152	4.91909706571503	0.218577209776158	0.619963975522092	0.890011602202208
Merged-chr7-35234899-4	chr7	35234405	35235405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19560.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	6.13336004630074	5.9684440311969	5.83828672789385	6.4103857155099	6.13384567117678	6.48819845636094	0.591990959281879	0.04947604132674	0.282827118089699
Merged-chr10-63309182-4	chr10	63308694	63309694	+	896.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	29841.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	2.99705762181419	2.54409266296405	2.72842117234542	2.81238772055108	2.57197994424602	2.98398239918999	0.12781006196548	0.872482985935884	0.970261003150518
Merged-chr17-50158684-2	chr17	50158184	50159184	+	951.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	31813.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.78857798570826	6.71876936418928	6.75013925723953	6.71875446934515	6.66203110339151	6.89634998059816	0.0039922884689212	0.987419148559327	0.997218304929226
Merged-chr2-91970285-2	chr2	91969785	91970785	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6722.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	4.49322936568245	4.38545263985648	4.44812956169394	4.46353942797479	4.65190116507003	4.55739277818186	0.30247338287698	0.477011279817624	0.823075183440783
Merged-chr17-50150773-2	chr17	50150273	50151273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	39724.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.27833757560095	3.2495432704968	3.2196059095429	3.22112784553441	3.29648759143194	3.50969701296853	0.367821795479513	0.550901779060952	0.860863360071628
Merged-chr2-91054045-4	chr2	91053587	91054587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008948)	promoter-TSS (NM_008948)	71.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	6.94920963234277	7.07355610886187	7.11774598612041	6.69668372847682	6.93244491367384	6.74481760489707	-0.374782943211931	0.136247202935639	0.493164140502377
Merged-chr19-42147316-4	chr19	42146812	42147812	+	844.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-77.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	5.93877240527174	5.72291832135228	5.84222136711004	5.19275441070554	4.78083929527121	5.27429950707698	-1.46915859314755	4.72418245242835e-05	0.00150551426082596
Merged-chr18-82916369-2	chr18	82915869	82916869	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	1737.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	4.20314196546079	3.97194674808396	4.10011690577777	4.28085856228216	3.98291129624288	4.16879180021395	0.143424257019601	0.768842533250627	0.942969053649134
Merged-chr3-36862211-4	chr3	36861720	36862720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-886.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	6.33084403130548	6.85998878003987	6.81340954369782	6.70240583849271	7.21939949597403	6.66779191240394	0.328564131472493	0.295742242289181	0.692640185104654
Merged-chr1-4906761-2	chr1	4906261	4907261	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	48433.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	3.35827185300144	3.67610684618532	3.54670100601288	3.18484851545666	3.20636135560904	3.22611969035611	-1.31182337727119	0.0357493969076216	0.232435134274611
Merged-chr5-125307797-4	chr5	125307329	125308329	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	33265.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.54864276061913	5.13405469263325	5.62018092904578	5.684493876961	5.88877412180078	5.38958693500668	0.446148573981001	0.222840589898521	0.617776133760918
Merged-chr7-84611761-4	chr7	84611243	84612243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5801.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	3.91876855674451	3.40006239595124	3.87934941129617	3.58313635031624	3.53608101242948	3.75386482334335	-0.430353100756302	0.465660450506622	0.817146354802119
Merged-chr5-140736340-3	chr5	140735848	140736848	+	981.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12221.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	7.7451234880204	8.06591925452139	7.5147335508988	7.35625590837128	7.63330940498598	6.55827757178351	-0.766514401577933	0.0257889863243941	0.190417216284609
Merged-chr5-114926964-4	chr5	114926467	114927467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3727.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	6.98102778728153	6.44714897678368	6.13508980554706	6.66016898513914	6.54776272439335	6.48930384485071	-0.0223205609770318	0.945426696717644	0.987907378883357
Merged-chr12-85393183-2	chr12	85392683	85393683	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18466.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.77429161144108	6.57382464710258	6.91751519301051	6.45034064229313	6.37427133946801	6.78088132727448	-0.349269191292786	0.215509270915687	0.608899282194137
Merged-chr12-76376896-4	chr12	76376389	76377389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	6623.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	5.30100931713598	4.99835455137456	5.1630463104078	5.82337776439667	5.75135941196354	6.03101266509522	1.34350597495521	8.9468292954084e-05	0.00258578593960522
Merged-chr19-37515083-1	chr19	37514583	37515583	+	675.0	f0_balb.idr	Intergenic	Intergenic	-35335.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.20279975471171	3.41955223544938	3.21004243954159	3.49992619970695	3.42442684727447	3.40031556292449	0.607740967965976	0.31940108505474	0.713439259696738
Merged-chr9-123868658-2	chr9	123868158	123869158	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6629.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	5.63958483604211	5.30432244192991	5.79593796969421	5.77004109904702	5.87844575792386	5.78327684690003	0.420536065865946	0.2061840263954	0.596809057329073
Merged-chr10-94576484-2	chr10	94575984	94576984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	221.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.93818167083808	7.06035139678913	7.10506017028008	6.64677325261052	6.35025622078846	6.24972536411318	-0.946096439509057	0.00046743004901057	0.00997535766044408
Merged-chr8-35567473-4	chr8	35566967	35567967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20331.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	5.09713748409529	4.85237912762468	5.11836247270306	4.36815824398213	4.29891358617074	4.61461025962211	-1.42856956812488	0.000704058806246039	0.0137235557934922
Merged-chr10-88335036-2	chr10	88334536	88335536	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22039.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	5.27563039891199	5.33478770584265	6.17518073628782	5.94151166948128	5.7555785820752	5.97392153697964	0.426572734267319	0.282037222547236	0.679908771156903
Merged-chr4-155469172-3	chr4	155468719	155469719	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027161, intron 1 of 4)	intron (NM_027161, intron 1 of 4)	105.0	NM_027161	69671.0	Mm.45401	NM_027161	ENSMUSG00000023153	Tmem52	2310043I08Rik	transmembrane protein 52	protein-coding	2.37120715778629	2.44922061859624	2.47782550205009	2.31235186586647	2.26231156863514	2.15258681357667	-1.26005364789569	0.152039664692103	1
Merged-chr1-105809697-2	chr1	105809197	105810197	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 3 of 9)	MIRb|SINE|MIR	28974.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	2.75125863598055	3.38050431037563	3.20232563431759	3.03768393582407	2.81453574459058	3.16157158540027	-0.563109456503297	0.455745575050855	0.811115753793496
Merged-chr19-61140856-4	chr19	61140366	61141366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131953)	promoter-TSS (NR_131953)	-26.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	6.3763714618409	6.75264935877531	6.5283763105611	6.9606276062602	6.94087588455596	6.89117534002824	0.572935262328298	0.0306240709028089	0.211606684245219
Merged-chr1-176818913-4	chr1	176818412	176819412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4252.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	8.01892209836152	8.20554996938993	7.42141311028281	7.7879850627103	8.10544510511696	7.59705247174042	-0.111691168796903	0.703541012531609	0.922108924938678
Merged-chr3-84345150-4	chr3	84344650	84345650	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34771.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	4.59207318008354	4.62565737275664	4.74150863156935	4.22528240994471	4.46201181138565	4.21550964636458	-0.838436151498658	0.0600877195617735	0.317334704062808
Merged-chr4-126255641-4	chr4	126255152	126256152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	667.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	7.53525236634944	7.14458057672375	7.58964085810187	7.49140593493316	7.67962870101911	7.76839294123164	0.316109589926487	0.21087617599967	0.603161969426302
Merged-chr8-60968710-4	chr8	60968205	60969205	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	Lx8|LINE|L1	-13906.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	5.17862944954042	5.66741932441196	5.64544415020879	5.40490033776577	5.36441779072733	5.40085505015629	-0.239049422994241	0.503238955513531	0.8369010474951
Merged-chr13-51115950-4	chr13	51115433	51116433	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	intron (NM_001283029, intron 1 of 5)	14386.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	3.11122471342754	3.16995353525503	3.16277328910207	3.30856800292273	2.91823505595143	3.23497263381155	0.0530099749106041	0.936536820232974	0.986037792257163
Merged-chr4-8917385-4	chr4	8916874	8917874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166050.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.81229107668894	5.16035240058653	5.46471959764663	5.57822731109271	5.49894886017267	5.91145388957422	0.291316318997187	0.439181627179438	0.801039562348678
Merged-chr15-96776844-4	chr15	96776328	96777328	+	807.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77100.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.82290025878873	2.8064576371237	2.88593734613857	2.7569778438853	2.97697731776805	2.64136658706358	-0.150432353941741	0.840247957167789	0.962819298477451
Merged-chr1-131482464-3	chr1	131481968	131482968	+	654.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	44893.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.28434874255936	4.34286536504698	4.54247126909963	4.27558331592169	4.42955147441242	4.48823878724209	0.0329131526767165	0.941059373590794	0.986888338850358
Merged-chr6-52012142-3	chr6	52011631	52012631	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	418.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	6.95785772963933	7.10205963957871	7.55612960445331	7.21196246265902	7.41591917902877	7.53940277300127	0.254551437463082	0.355908071883354	0.742773986588165
Merged-chr12-78791493-3	chr12	78790923	78791923	+	894.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019579, intron 1 of 14)	intron (NM_019579, intron 1 of 14)	42476.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	5.22839963950141	5.70526195385452	5.30060798783896	5.38150486388913	5.27603195803767	5.01140571566461	-0.38889177649558	0.304371895950632	0.700883185755923
Merged-chr14-54416991-2	chr14	54416491	54417491	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 1 of 11)	B4A|SINE|B4	688.0	NM_001253679	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	3.18200385240397	3.01280279109453	3.08335006186345	3.25248994974423	2.95581693891782	3.27091478769073	0.290371906277528	0.662552292997313	0.906804932599005
Merged-chr8-70508694-1	chr8	70508194	70509194	+	561.0	f1_c57bl6.idr	intron (NM_001348227, intron 3 of 3)	intron (NM_001348227, intron 3 of 3)	1251.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	3.3459422734839	3.38672800497954	3.65100368502017	3.03615127721306	2.95894588531308	3.47366440327629	-1.20377965356414	0.0787956060258769	0.370868463259694
Merged-chr17-21566399-4	chr17	21565894	21566894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	-584.0	NM_001002008	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	5.32515627638281	5.43544983650772	5.3188282267992	5.77354551779673	6.0444782025725	6.1040231125117	1.13116142533641	0.000487631708802028	0.0103019416863577
Merged-chr5-113812865-4	chr5	113812365	113813365	+	950.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12513.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	4.43493867933519	3.89453058925109	4.38118935145662	4.26824207415244	4.33368291891214	4.68062362479545	0.460446483644432	0.360233022946946	0.746468721585269
Merged-chr1-157380925-4	chr1	157380432	157381432	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-31420.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	5.60908790375478	6.12574744899117	5.35883431766932	5.26352149816039	5.13825631807022	4.71535260767717	-1.31511228461338	0.00185804707856662	0.0291871590170609
Merged-chr2-129633484-4	chr2	129632982	129633982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	38020.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.87785929185478	6.63638074084073	6.55378565412413	6.31444870011685	6.46559800103934	6.66294851997218	-0.350428031421907	0.206594141268883	0.597209296528952
Merged-chr10-63023301-3	chr10	63022794	63023794	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079824, intron 1 of 9)	CpG	555.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	7.25758874326996	7.47402562408784	7.40469556525352	7.64679034603946	7.54912279947755	7.56301351675898	0.300582933244819	0.185819337838244	0.570175160932842
Merged-chr1-124072797-2	chr1	124072297	124073297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27238.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	5.93246460657302	5.90166988006136	6.0292555427199	5.85012711657313	5.90146766491337	6.06786893191663	-0.0249677336328826	0.932819006784703	0.98531684549485
Merged-chr14-66812869-2	chr14	66812369	66813369	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	URR1A|DNA|hAT-Charlie	55731.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	3.90425574070271	4.0255747661658	3.73831677761736	3.60617465977532	3.76013434500005	3.91067982507345	-0.44840200090562	0.403909113375397	0.779110033283261
Merged-chr11-115073386-2	chr11	115072886	115073886	+	919.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11347.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	5.23404582172495	5.20192084078537	5.45575358663796	4.92884024856221	4.93809956645306	5.32003484905146	-0.479410347335935	0.201256121194491	0.590817080593818
Merged-chr7-83724737-4	chr7	83724207	83725207	+	836.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	7691.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.3568838638701	3.21268115033471	3.50753625483974	3.53138813565767	3.44581690429467	3.62917084035165	0.662410790158578	0.265073798449159	0.662839771217229
Merged-chr19-55227891-4	chr19	55227411	55228411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 7 of 20)	intron (NM_001081076, intron 7 of 20)	13325.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	4.76396102346406	4.36706490181063	4.57842557439024	4.50689120502604	4.57302400024295	4.64477425953433	-0.0167017037578566	0.969175126432906	0.992995172144871
Merged-chr15-36173517-2	chr15	36173017	36174017	+	921.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-493.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	5.88304076039139	5.74904226357813	5.79182340585615	5.90646562420097	6.33284582763757	6.36893467897363	0.706571300865495	0.0235477572233877	0.179856965581389
Merged-chr15-64261791-4	chr15	64261285	64262285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	50888.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.60534803087947	3.93923505204681	3.66951393842236	3.71290578645126	3.96068156797211	3.94512113898696	0.402028399785485	0.462448021030327	0.815240994362107
Merged-chr19-56738562-2	chr19	56738062	56739062	+	773.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16190.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	2.43649273420469	2.50507576311757	2.60260699689205	2.58418096486729	2.42875519559859	2.73654700327388	0.40733755127951	0.606000102771271	1
Merged-chr16-57122709-2	chr16	57122209	57123209	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	995.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	5.36778526052681	5.30611820683381	5.0926907157487	5.56924307654891	5.51059175468529	5.39451848339086	0.442063357404306	0.198216815411462	0.586478383096365
Merged-chr17-31564824-3	chr17	31564356	31565356	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	83.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	6.95680530261927	6.20376724327172	6.50705255456415	6.82130079516149	6.00248622746227	6.58384648204315	-0.136360175645028	0.707678863923726	0.923504801393744
Merged-chr10-94090249-3	chr10	94089738	94090738	+	997.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	54237.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.89276261890367	4.01365886090116	4.16146742617759	4.96880654412718	5.07656753708328	5.04261666896606	2.61203721552677	8.53620600219218e-09	7.87450808237702e-07
Merged-chr2-90745396-4	chr2	90744859	90745859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-11.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	8.57493127949367	8.77121277798224	8.21282072479458	8.4789909359805	8.61694977266288	8.19991330936964	-0.135424070048456	0.589357918484396	0.876844702581037
Merged-chr11-118462098-2	chr11	118461598	118462598	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7103.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	4.97538655846795	5.0428115827655	5.03709321414585	4.75750660600314	4.7030942588502	5.25750725945826	-0.223577711964738	0.582086942544737	0.873508337816738
Merged-chr19-48063500-4	chr19	48063008	48064008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125796.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	4.16294525185716	4.32738365781114	4.60450335255359	3.78099720917958	3.96303361112137	4.09803785411466	-1.19054617808222	0.0188390576342988	0.155343709884524
Merged-chr12-32765863-4	chr12	32765347	32766347	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54488.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.08260420722031	5.22939545266702	5.36380808239496	5.17656581141395	5.14685404408462	4.66998710015606	-0.401970441444199	0.311252346967172	0.706465219571547
Merged-chr3-83056059-2	chr3	83055559	83056559	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016784, intron 1 of 14)	L2|LINE|L2	521.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	6.0549363348503	6.27783534696866	5.81719063947618	6.06185435639623	6.2004424978044	5.93124236424844	0.00295509327738766	0.992418526581567	0.998523796268552
Merged-chr11-54879587-4	chr11	54879081	54880081	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13198.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	4.94432605459013	4.6846031051795	4.64270918166336	5.3812802195708	5.39249710174919	5.14137072196122	1.15510973260866	0.00271514427540328	0.0390125582572537
Merged-chr3-81052530-4	chr3	81052041	81053041	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	16125.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	7.99099779383119	8.10764446639455	7.68606623606561	7.71733835733328	8.07047930007731	7.74256128605242	-0.123531280398872	0.618666338789609	0.889497316944952
Merged-chr13-81025504-4	chr13	81024952	81025952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	61378.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.41574226955105	6.67804684811047	6.50513918953012	6.63574431904095	7.05054052603286	6.54663793244613	0.373339737812893	0.198549012301643	0.58685067390707
Merged-chr5-139025500-2	chr5	139025000	139026000	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-30547.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	4.97520751825837	4.97651326586074	5.05451306204312	4.88286173949253	4.9510908722224	5.11823309430998	-0.0391186188526521	0.916353770676889	0.981243905880233
Merged-chr11-97663419-8	chr11	97662847	97663847	+	913.2589109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139311)	promoter-TSS (NM_139311)	-65.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	6.43357288709181	5.89801924687269	5.78945178612241	6.54805446137518	6.13254624115723	6.25585053170055	0.401362860118376	0.238185397522531	0.634837659879174
Merged-chr2-27727031-2	chr2	27726531	27727531	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	16448.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.26791835397812	6.7069458949372	6.8267663079721	6.31168333487412	6.24520999800832	6.30990668172558	-0.534014063929227	0.071356740640043	0.350519610081864
Merged-chr12-116405303-4	chr12	116404823	116405823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	-79.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	5.51372064682174	5.47529821519974	5.07814411782542	5.53882274306948	5.43978854035249	5.4472780775571	0.176335619908514	0.616340388649626	0.888323384760338
Merged-chr3-147070773-1	chr3	147070273	147071273	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	218406.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	3.35865090723026	3.29923867078181	3.14741953193799	3.43581242513355	3.20376620652457	3.75789816273536	0.775115094777389	0.23235250549655	0.628693654960878
Merged-chr18-73839793-4	chr18	73839285	73840285	+	869.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19600.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	3.63354144247221	3.65897254983169	3.4008176507111	3.6790308972928	3.55355424430886	3.69588098987976	0.221934532033316	0.695988949599705	0.919291538728398
Merged-chr9-67847328-3	chr9	67846863	67847863	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	6967.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	4.87092483860147	5.18762821563687	5.11625499380148	4.88832490823093	4.39254006301554	4.48997906973937	-1.03160313204303	0.0165501675962121	0.142321862892271
Merged-chr4-102577729-7	chr4	102577276	102578276	+	767.273804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	7716.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.95958247219768	4.78971676404291	5.07965191726244	5.21017319715756	5.03711268972029	5.49800565167371	0.649353555269293	0.0925399774154029	0.405215908567243
Merged-chr1-86013234-2	chr1	86012734	86013734	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-8708.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	3.36480400355881	3.38721893546492	3.04932302858014	3.54548723391069	3.35894281431432	3.79439272170957	1.091988965696	0.0998072515377657	0.421317011670116
Merged-chr11-60802690-2	chr11	60802190	60803190	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	RMER6B|LTR|ERVK	8575.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	4.57569111724253	4.48597999914214	4.99049732217827	4.77994494519963	4.8693792092085	4.61212018678804	0.175894207523216	0.683143666852015	0.91523316791368
Merged-chr17-34590427-2	chr17	34589927	34590927	+	621.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134116, intron 1 of 3)	intron (NM_134116, intron 1 of 3)	621.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	5.64792216544301	5.50450237096744	6.28186332794206	6.24079837132499	6.01769889345268	6.4288524464309	0.670846622234785	0.0626830467887421	0.325597576182484
Merged-chr6-143100191-4	chr6	143099689	143100689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-37.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	6.07624198538599	5.87005374041726	6.15817435141153	6.68940016654286	6.5256431231776	6.08450972101008	0.720569728699797	0.0205368427321547	0.164263155825928
Merged-chr17-17880336-1	chr17	17879836	17880836	+	909.3333130000001	f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	B4A|SINE|B4	3603.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	5.58706671350493	5.65470550131397	5.83710839591215	6.03894768387872	6.01267776645395	6.48879620847697	0.872795935579145	0.00691185877563637	0.0773533214530129
Merged-chr16-91399120-4	chr16	91398615	91399615	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7120.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.47743470272091	8.38272109115936	8.12818373475226	8.20989631231371	8.5418629309719	8.11285458496175	-0.0470610408958055	0.844220643915858	0.96373428957366
Merged-chr11-107326359-4	chr11	107325837	107326837	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-136956.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	6.67558571744846	6.37341710146363	5.69206969960039	5.99431524510093	5.96496307039356	5.50078898852127	-0.802828563553312	0.0371376732058301	0.237813722649739
Merged-chr14-103547893-4	chr14	103547427	103548427	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 8 of 30)	B1_Mm|SINE|Alu	34586.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	4.33788584909316	4.57781967653464	4.51780918213	5.02719630594815	5.38721364418735	4.67618845847942	1.35524916884145	0.00213070273493484	0.032399764833417
Merged-chr7-16403536-6	chr7	16403043	16404043	+	942.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	2347.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	5.44978853321541	5.9349979427636	5.84102554578314	5.75787330434229	5.86816181768099	5.58456438053884	-0.0132276518987311	0.968848988567994	0.992868854495543
Merged-chr12-85703638-4	chr12	85703123	85704123	+	687.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16903.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	4.67137490121358	4.31952355853009	4.70125423037881	4.61542819149896	4.44291697412098	4.39683487280779	-0.19657189896186	0.657809983642233	0.904859102731141
Merged-chr17-24707634-4	chr17	24707149	24708149	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	4.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	7.20459398455073	7.30972148700353	7.07948454869531	7.5123470924196	7.95282920247275	7.40510180472833	0.661425240524594	0.0123477637384795	0.116528606686107
Merged-chr4-143412764-4	chr4	143412270	143413270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355724, exon 1 of 4)	5' UTR (NM_001355724, exon 1 of 4)	344.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	6.8340664701146	7.34187309006871	7.36041199562888	7.05628280021389	7.5393949325876	7.2516289208355	0.156325317101006	0.585724501966663	0.875126871488964
Merged-chr10-117304010-2	chr10	117303510	117304510	+	694.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11142.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	3.31928101680663	3.42321890474782	3.52190512817178	3.33698068572627	3.08507631738611	3.69038450957714	-0.130512022657218	0.840203922671974	0.962819298477451
Merged-chr5-137779245-2	chr5	137778745	137779745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027242, intron 1 of 3)	CpG	341.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	5.65639155442797	6.02007678766318	6.30232397415347	5.90163848773389	6.13737630946125	6.39721394405841	0.248173348255698	0.465885666140976	0.817254134547215
Merged-chr11-34220863-4	chr11	34220359	34221359	+	873.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12770.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	5.86700417132988	6.24044116178999	5.93893617605664	6.38508341414565	6.03504574955826	6.13830890792888	0.273438179996752	0.379754099577868	0.762054241352351
Merged-chr8-30941273-2	chr8	30940734	30941734	+	804.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148293.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	2.89258511923482	2.95727672309326	2.89532721685243	3.37587249815868	3.22887243876012	3.49101864465924	2.01539364853528	0.00344787345204358	0.0467172535739525
Merged-chr4-133277729-4	chr4	133277248	133278248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110978)	promoter-TSS (NR_110978)	42.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	7.78047032893141	8.14961306179173	7.89125384827709	7.58540010804751	7.69763561238743	7.54971705813627	-0.4842095981071	0.0381313579845435	0.2416476797546
Merged-chr14-31930626-4	chr14	31930145	31931145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-98458.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	3.09506972699848	3.15743079871913	3.11898379314401	3.16682494584497	3.28639442534547	3.19127764128324	0.402019472947742	0.525348995513682	0.848982097510195
Merged-chr17-47501492-2	chr17	47500992	47501992	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356290, intron 1 of 7)	B3A|SINE|B2	799.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	4.36285175981954	4.17434199486647	4.5863410210932	4.17831551066734	4.40188811289186	4.37011419694143	-0.139858810569245	0.763645882208988	0.941793063578371
Merged-chr4-154913047-2	chr4	154912547	154913547	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14004.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	3.06308804959507	2.87717147271363	3.38947307256615	3.40555374187973	3.15162259594541	3.46003267331828	0.917130979014419	0.181901597531252	0.564574140302898
Merged-chr5-124540003-2	chr5	124539503	124540503	+	617.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-788.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	5.31113649335011	5.27140417198949	5.09008814012506	5.14487426505735	5.1443918868881	5.08426538644988	-0.221913555455199	0.532536766359791	0.851971173271146
Merged-chr18-50129747-2	chr18	50129247	50130247	+	685.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 1 of 23)	intron (NM_008292, intron 1 of 23)	1546.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.69275693047224	4.67992670685158	4.63794131237439	5.39881868013185	5.45852397882478	5.29704056348615	1.53458269451775	3.59332873843953e-05	0.00119597479067231
Merged-chr4-88760662-3	chr4	88760153	88761153	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085531)	promoter-TSS (NM_001085531)	-121.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	2.56479294447359	2.5436071939501	2.71049969420965	3.69076267441525	3.40330011631001	3.19263240066217	6.89861111976503	1.23891813092143e-07	8.67013455321363e-06
Merged-chr11-117779092-4	chr11	117778585	117779585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 2 of 19)	intron (NM_145439, intron 2 of 19)	563.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	7.71683530036319	7.62185702144789	7.79939412949453	7.64982367136637	7.87317211786257	7.87967929076961	0.135308898936281	0.545468142479425	0.858161682002458
Merged-chr3-54317431-4	chr3	54316938	54317938	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-43669.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	4.42043969535813	4.54477800128788	4.74287405910741	4.51786252799158	4.7030037732376	4.61601850485117	0.123514570259092	0.770737641057355	0.94345245755247
Merged-chr10-63382811-4	chr10	63382236	63383236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	293.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	5.62873002575512	5.77664734217245	5.56227245066031	5.41625352111774	5.56337644488392	5.59675914524694	-0.259760703500994	0.422145996311335	0.79098189652931
Merged-chr7-6363229-1	chr7	6362729	6363729	+	1000.0	f0_c57.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-79.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	4.96549359190253	4.79822758228456	5.3054288197396	4.98753912204951	4.95736042842088	5.02320254751098	-0.0840886838202202	0.830185015018069	0.960219727001139
Merged-chr2-146848113-2	chr2	146847627	146848627	+	868.216675	f0_balb.idr|f1_balb.idr	Intergenic	LTR16C|LTR|ERVL	-7762.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	4.5896801846737	4.52657671952351	4.65431989039029	3.43612554258824	3.30360202098377	3.79283926818119	-3.87176245323295	3.8103666942679e-09	3.81073307568081e-07
Merged-chr11-120990537-4	chr11	120990067	120991067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	C-rich|Low_complexity|Low_complexity	766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	8.09418729671415	8.26016620991143	7.99376039585181	8.20190682412283	8.12734881846629	7.80547988254486	-0.0879725919024243	0.705633569692097	0.922834459892351
Merged-chr9-63974850-3	chr9	63974339	63975339	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	47220.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.29877820342711	4.82821482200032	4.50526955929618	4.28100285708935	3.93443928188676	4.29219039739622	-1.89332362108422	0.000136267175413381	0.00367668229838403
Merged-chr10-60305419-4	chr10	60304915	60305915	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 65 of 68)	intron (NM_001252635, intron 65 of 68)	20954.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.3182990089768	3.23371256132535	3.55062430031451	3.31539948285074	3.14360084261453	3.3049982927717	-0.466163898286774	0.455690424368656	0.811093917311714
Merged-chr19-12595692-4	chr19	12595196	12596196	+	914.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	870.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	3.95615202061194	3.93315636702484	3.44320267958836	3.74168599447336	3.62439533191305	3.74752437657188	-0.339147794066056	0.558380163865542	0.864644955334959
Merged-chr2-144009246-4	chr2	144008740	144009740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2023.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	6.63114059068726	6.2886889297346	6.42972910446489	6.780030120165	6.71967511032994	6.4128234807822	0.3136982038122	0.267889489092827	0.665075242857499
Merged-chr9-97115708-4	chr9	97115216	97116216	+	955.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4675.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	2.86418010675615	3.11859805677191	3.13623232012909	3.22919428730382	2.84037448410042	3.09250016862249	0.078456714171193	0.910842412858506	0.979969158480567
Merged-chr1-152557412-2	chr1	152556912	152557912	+	628.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346119, exon 5 of 18)	exon (NM_001346119, exon 5 of 18)	67805.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.52260133232831	5.29709335273905	5.38026472715328	5.19544883838669	5.41773627484879	5.63789055785443	0.0352217373340634	0.920308256121038	0.982323255407855
Merged-chr11-3163821-2	chr11	3163291	3164291	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	RLTR51B_Mm|LTR|ERVK?	29672.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.3506053116835	6.81711321050748	7.04212773519553	4.61923482355811	4.38575325144148	7.24038524816497	-0.87307939671348	0.60161291612423	0.881993261880913
Merged-chr6-143074161-4	chr6	143073695	143074695	+	972.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 7 of 26)	intron (NM_001362117, intron 7 of 26)	25957.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	6.15244160481155	6.11996475017771	5.90321855655123	6.09725045412205	6.1459856754718	6.03701986764979	0.0446355030095819	0.87767399604935	0.971699698312014
Merged-chr13-111461567-3	chr13	111461031	111462031	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361926, intron 2 of 10)	intron (NM_001361926, intron 2 of 10)	28596.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	3.13508874771077	2.87995826946426	3.06293887803144	3.13701135829455	2.93708852329327	3.01598948469067	0.00722123099254269	0.991511668773903	0.99826611332009
Merged-chr16-94503318-3	chr16	94502815	94503815	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	23314.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	5.33814198154285	5.25902467737852	5.14934589041207	4.94060079925601	4.91504496184153	5.00503863533277	-0.643698442247972	0.0749225140775034	0.360328906091205
Merged-chr11-110428649-2	chr11	110428149	110429149	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	29547.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.78908606983095	3.69582786770711	3.85676725514669	4.30801979892225	3.8168980328157	4.02647960150905	0.874235549824996	0.100187439367061	0.422117396063314
Merged-chr11-62551644-4	chr11	62551136	62552136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313984)	promoter-TSS (NM_001313984)	-95.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	7.28808089428388	6.77406276090697	6.600190230088	7.15296826805704	7.10858998340636	6.8901541799955	0.192831612532991	0.51533964751678	0.843554017873748
Merged-chr17-34837071-4	chr17	34836572	34837572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	53.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	7.7140496616874	7.85790946563658	7.51754828561577	7.74004196844468	8.37274310451617	7.71157487671837	0.402276376371686	0.15114255439604	0.518506648409409
Merged-chr19-37509928-4	chr19	37509439	37510439	+	973.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40479.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.31029336297441	4.40841164796144	4.34236464979403	4.53233900188852	4.55985007638661	4.69590265516573	0.601497366919143	0.160414498295618	0.533005464258189
Merged-chr10-107990085-3	chr10	107989521	107990521	+	666.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43376.0	NR_131147	628877.0	Mm.363120	NR_131147	ENSMUSG00000112910	Gm29685	-	predicted gene, 29685	ncRNA	2.32851576608367	2.45142576339747	2.56872727726186	2.38793219444354	2.16066028573685	2.32460292676192	-1.05320952117921	0.22335223831489	1
Merged-chr14-121929104-4	chr14	121928605	121929605	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13331.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	7.59608494443463	7.74054317922988	7.29545041298887	7.39306953831133	7.60412810367152	7.29346574136706	-0.177663918853598	0.482548850803059	0.825695582331598
Merged-chr11-94328961-2	chr11	94328461	94329461	+	756.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	960.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	6.10110962863169	5.99052812690577	5.97778622076213	6.20318779305454	6.26795025898853	5.9420479365459	0.220924481721566	0.452614534254348	0.809456767794566
Merged-chr15-5157343-1	chr15	5156843	5157843	+	735.0	f1_balb.idr	intron (NM_001013367, intron 1 of 8)	B1F|SINE|Alu	13482.0	NM_001355640	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	2.80694283572378	2.73270775900343	2.85638173353223	3.06038504459698	2.88451626799487	3.21836232326128	1.2561361683082	0.0770076620451376	0.365775057391982
Merged-chr11-106192057-2	chr11	106191557	106192557	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 1 of 10)	B1_Mur3|SINE|Alu	1546.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	4.20960306675699	4.13019149635077	4.13201909861093	4.55737807377322	4.42187151659265	4.38762968958682	0.797344747317752	0.0766570009130173	0.364755288612704
Merged-chr5-135702787-4	chr5	135702290	135703290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	L1MC4a|LINE|L1	13645.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	6.5458435167049	6.63761963050074	6.35188947787611	6.21633557197604	6.43340724816923	6.22754577636789	-0.359639381273051	0.197833910375952	0.586022214829555
Merged-chr10-77523305-4	chr10	77522812	77523812	+	935.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7036.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	5.56953267084347	5.78049225727415	6.05168275575228	6.0314544433496	5.75351157598728	5.95874511905907	0.19629790996623	0.547198613335045	0.859256588783723
Merged-chr7-66140342-4	chr7	66139861	66140861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	L1MC3|LINE|L1	30846.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.84959659773735	5.93503012993084	6.21042803821997	5.88559487352787	5.94188596481751	6.36225448155325	0.123851869458072	0.700644563740709	0.920969840759169
Merged-chr6-137410263-2	chr6	137409763	137410763	+	994.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-458.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	5.48250258685079	4.90017417793673	4.77385079298707	4.78207799305197	4.5855775250303	5.2273399999045	-0.456726735080543	0.321220531188397	0.714789344506301
Merged-chr8-109780191-2	chr8	109779691	109780691	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	1608.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	6.49064303201187	6.55740455826913	6.51766911275118	6.6266450011026	6.9764479993652	6.84909687003913	0.484257920361039	0.0669054411006157	0.338115271369574
Merged-chr17-29035259-1	chr17	29034759	29035759	+	545.0	f0_balb.idr	intron (NR_036613, intron 1 of 6)	B4|SINE|B4	2599.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	4.5496821126749	4.38185923461766	4.83118898179442	4.53091807159898	4.49561532539409	4.59949399901499	-0.121156697982292	0.780676704346435	0.946078518476608
Merged-chr3-60518634-1	chr3	60518134	60519134	+	685.0	f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	17455.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.11634595465196	4.94884483073251	5.14498482780913	5.36618016186293	5.58856172922671	5.10493752745593	0.636495501468271	0.0859210290306113	0.388196028555869
Merged-chr2-69885608-4	chr2	69885104	69886104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	11.0	NM_029280	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	6.19955350279596	6.4355790793963	6.55167043459284	6.27740591861799	6.6930241752088	6.57732466042519	0.216660299289295	0.457304837589135	0.812201206649339
Merged-chr15-28026134-4	chr15	28025645	28026645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-297.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.96541824140838	5.95017636772667	5.81966897420228	5.79874955900493	5.4528052280626	5.78024380597641	-0.435237048663184	0.171700804531454	0.54999812389387
Merged-chr8-122425159-2	chr8	122424659	122425659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 4 of 4)	B2_Mm2|SINE|B2	3139.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	2.45504851436731	2.34513257719558	2.65377431022692	2.30465122125062	2.05589007026941	2.54703795222212	-1.08849623973509	0.256883812049082	1
Merged-chr18-23431126-4	chr18	23430622	23431622	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15713.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	3.69983461149138	3.94904033400243	3.8267187078963	3.77445045583329	3.7231106009332	3.45316579391757	-0.544850056866752	0.332562767788098	0.723654123936882
Merged-chr6-90463135-4	chr6	90462660	90463660	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355668, intron 1 of 2)	CpG	584.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	6.34344197851282	6.27377520715949	5.44168183018641	6.22940842439546	5.87823763623551	5.28776550154358	-0.385078100164464	0.587669375718507	0.876033486335519
Merged-chr11-85712767-2	chr11	85712267	85713267	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6977.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.0462274432345	5.12253415540204	5.28543120647067	4.84204496028033	4.53403466685866	4.6917040243185	-1.01887986130444	0.00985055170110464	0.0994111226131612
Merged-chr11-60046447-4	chr11	60045936	60046936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290012)	promoter-TSS (NM_001290012)	53.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	5.73939023804809	5.81745374791498	6.00847979706928	5.92179842090381	5.81210997385192	5.29423958994702	-0.246328342516023	0.479997223232124	0.824450336912929
Merged-chr2-127251841-4	chr2	127251347	127252347	+	859.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175145, intron 2 of 3)	intron (NM_175145, intron 2 of 3)	3872.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	5.12859864920954	4.75914144817772	5.16797824747895	4.75930006721121	4.81018537825453	4.56642946734805	-0.669667837612507	0.104529959105758	0.431477767500342
Merged-chr17-28328358-7	chr17	28327866	28328866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-105.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	8.26688007441823	8.45821642971147	7.95884526257698	7.76200900299222	7.92076750025143	7.2986225958445	-0.783504543849928	0.00426293357872012	0.0545832167773001
Merged-chr10-128779092-4	chr10	128778597	128779597	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11813.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	8.16265249271459	8.30016869604829	8.08898391470438	8.10327507842426	8.40800990556453	8.02058721900062	0.00811084179320629	0.971807530779513	0.993783614343214
Merged-chr1-85839195-2	chr1	85838695	85839695	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	MTE2b|LTR|ERVL-MaLR	45178.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	5.30481829410599	5.49071216316029	5.48926905545881	5.28290762079305	5.41661222937272	5.70928351706775	0.0838084499569761	0.809331136064314	0.954721853010197
Merged-chr14-62026761-4	chr14	62026267	62027267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	266212.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	6.00513688228144	6.15933537508502	6.17882326606051	5.80859472265365	5.96874497804904	5.90653187602637	-0.372225452533065	0.205298815050153	0.595998318424853
Merged-chr2-165060093-4	chr2	165059587	165060587	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	RSINE1|SINE|B4	4451.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	3.87521348853265	3.68905496040273	3.66594869357036	4.51939056119174	4.79059494421739	4.37354883750267	2.3858856265266	5.38867401137585e-06	0.000236025770180422
Merged-chr6-127109607-4	chr6	127109093	127110093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177003)	promoter-TSS (NM_177003)	-41.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	5.12415695193254	5.26836609661899	4.80925680666711	5.01096431207507	4.70779033281713	4.37116523314847	-0.783983630323125	0.0782913834383371	0.369468547705147
Merged-chr7-127206139-2	chr7	127205639	127206639	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	2329.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	3.65720500285457	3.74919513707805	3.85341945656252	3.81065884611854	3.99976578826544	3.97083214853064	0.573241792562587	0.26994415650264	0.666963156307406
Merged-chr5-3498842-2	chr5	3498342	3499342	+	959.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-44991.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	2.83810901464118	3.08032404590872	3.0680675829812	2.96427965682797	2.80850926010294	3.02418423831187	-0.323171678015831	0.642251854555704	0.899390704863657
Merged-chr5-64039284-2	chr5	64038784	64039784	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5689.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	3.32112933211486	3.06271166784354	3.26318254951425	3.43923812864283	3.23837922966199	3.33518696118058	0.483433883629153	0.441954905644479	0.803032582797918
Merged-chr9-66124246-4	chr9	66123759	66124759	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	627.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	6.69602810322133	7.08852626988062	7.02572632768081	6.90970055283137	7.37017159436388	6.93283531187896	0.23112445932176	0.414568358360725	0.785861805729108
Merged-chr4-101186468-2	chr4	101185968	101186968	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	78814.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.9866808421709	5.09907281894787	5.35674694062277	5.03325390296774	4.73012916806259	5.08288140314695	-0.426551207484046	0.275228843023449	0.672715141741186
Merged-chr10-6916740-4	chr10	6916259	6917259	+	941.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170802)	TTS (NM_001170802)	63522.0	NM_001347225	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	3.44995808515097	3.5816546066701	3.42690452613405	3.16946727969512	3.16690572548264	3.27168334307796	-1.17761738485811	0.0557163244908288	0.303843487235082
Merged-chr1-53352739-4	chr1	53352236	53353236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353501)	promoter-TSS (NM_001353501)	16.0	NM_001290984	70396.0	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	5.00348276931328	5.13927818182834	5.48469717957291	5.12724671432123	4.93968492569404	5.41117237572159	-0.107296548565497	0.784668999566934	0.94771222208302
Merged-chr12-8511732-3	chr12	8511267	8512267	+	769.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-11758.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	5.36350151114077	5.60577698607203	5.56179644937581	6.64731043865143	7.05740437963261	6.38136678550894	2.079176966954	1.94730835102259e-10	2.42562325257317e-08
Merged-chr7-35030610-3	chr7	35030117	35031117	+	681.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	25949.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.02600259420217	3.90321189884051	3.79581634937603	3.69982135959775	3.72643856219169	4.27740071156358	0.0143631362933473	0.979438705964211	0.995238998203257
Merged-chr2-19004975-4	chr2	19004469	19005469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6650.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	5.82934773844707	5.80580725912037	5.91636980488924	5.74042442522377	5.86907149995775	5.93071841134173	-0.000685541010708177	0.998183193029434	0.999590080903912
Merged-chr4-136206280-4	chr4	136205796	136206796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355698)	promoter-TSS (NM_001355698)	-69.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	2.06767598745115	2.09998790205328	2.23145179317673	2.02334536403133	2.03061704090892	1.90512453182699	-1.12447178228472	0.241604832218457	1
Merged-chr11-106486735-2	chr11	106486235	106487235	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	1061.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	6.25476487558587	6.59222097695613	6.05410330719148	6.02486959639868	6.32701611839232	6.24699556594746	-0.203849577499904	0.511444612263203	0.841400291314575
Merged-chr17-17895123-2	chr17	17894623	17895623	+	745.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7299.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	4.84043703328723	4.93120500317787	5.21844525671594	5.15534052497549	5.20970539081158	5.31184898368406	0.481379683190798	0.195139220925544	0.582791152319467
Merged-chr16-57536789-4	chr16	57536306	57537306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-12436.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.7575004299348	7.43828673502788	7.55910052365304	7.19301646337887	7.57533313962224	7.29973688294097	-0.321142069889497	0.202642743214836	0.59252027125208
Merged-chr19-10860327-3	chr19	10859825	10860825	+	914.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 9 of 11)	exon (NM_133804, exon 9 of 11)	9454.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	3.15724623527223	3.32526625912594	3.41473488221452	2.89474674103712	3.22455078825974	3.53491899346982	-0.241783416137975	0.729885239018207	0.930648977416209
Merged-chr2-14239748-4	chr2	14239323	14240323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 2 of 29)	ID_B1|SINE|B4	10409.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.04976137850984	5.89491733189918	5.90235103706919	6.12756137342308	6.31663071076941	5.83597866412831	0.291856984771778	0.346289502352429	0.734546534574169
Merged-chr13-47226737-2	chr13	47226239	47227239	+	761.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	B3A|SINE|B2	32736.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.51568324406215	7.52376787992961	7.53923022388851	7.15861540342474	6.82781120360108	7.07442163061031	-0.752015526619573	0.0017938037953374	0.0284140160293992
Merged-chr16-55819701-4	chr16	55819217	55820217	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	2421.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.77709868182357	5.5585125835367	5.61810690943215	5.75683751420336	5.66355649619581	5.83580308203855	0.167123825488626	0.596437043976983	0.879911021114935
Merged-chr13-54589563-4	chr13	54589037	54590037	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	537.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	5.2355211351338	5.4543442963231	5.40235741992535	5.25659886178404	5.57763763665734	5.43561106596944	0.136307798234835	0.694516071621756	0.919210273513843
Merged-chr8-84990013-4	chr8	84989502	84990502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-593.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	7.03341507735595	6.67622975957194	6.74767997426802	6.95699387279975	6.89120232387554	6.91123300568313	0.13442580175913	0.6041754901663	0.883003945319161
Merged-chr17-53480600-2	chr17	53480100	53481100	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 1 of 5)	intron (NM_025887, intron 1 of 5)	1366.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	5.07070087313853	4.85824855604224	4.68813658598536	5.27048902262809	5.07276854471872	5.20290201333514	0.612921259422089	0.11222412992658	0.447498222213585
Merged-chr7-84212255-3	chr7	84211726	84212726	+	656.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60333.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	2.71059049014719	2.80550901260667	2.95535591559238	3.47716213995853	3.40558822684476	3.44139953562166	3.12570317279336	4.82913661584052e-05	0.00153484644587799
Merged-chr1-86263638-2	chr1	86263138	86264138	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030184, intron 23 of 24)	intron (NM_030184, intron 23 of 24)	-39583.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	2.52825509670471	2.48854967958594	2.64529084191366	2.65427587348321	2.32082220180762	2.53014322473728	-0.274123784760335	0.735428771515164	1
Merged-chr2-26907858-2	chr2	26907358	26908358	+	582.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	2784.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	3.47528370530308	3.5612186312186	3.85342569477023	3.60425592756815	3.9757266601086	3.77505930992569	0.558863306793886	0.326867683000829	0.719183905339082
Merged-chr5-114804720-2	chr5	114804220	114805220	+	620.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026718, exon 15 of 15)	3' UTR (NM_026718, exon 15 of 15)	9256.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	3.27168123340038	3.12663886946655	3.54199126281636	3.24806691258599	2.68412429462169	3.12780374257491	-1.18378401232223	0.124669335066979	0.472306664538883
Merged-chr15-57995903-4	chr15	57995455	57996455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 3 of 3)	L1MB8|LINE|L1	10052.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	4.03554444276008	4.33742376440506	4.30659641255346	4.45790012505904	4.47691664255841	4.50237193264046	0.646406172310983	0.153788632943926	0.522858730489425
Merged-chr14-8216327-4	chr14	8215818	8216818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	70.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	7.29639559118279	7.77138431540139	6.84814443578794	7.52530766825691	7.9758836955562	6.9555172213065	0.279457478668036	0.624594362215591	0.892121293039105
Merged-chr11-115191574-2	chr11	115191074	115192074	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	B4A|SINE|B4	4087.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.9879706088769	6.7176096650576	6.95415859988121	7.2404493528523	7.53593869847973	7.18230490552844	0.675730916958406	0.00873994210454272	0.0917528517076446
Merged-chr7-19561757-2	chr7	19561257	19562257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	CpG	641.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	6.23522050708938	6.46755556655179	6.35182707193757	6.46105593379592	6.27542818595263	6.61996578028568	0.153940450435313	0.585535826780704	0.875041527312205
Merged-chr19-6336752-2	chr19	6336252	6337252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168488, exon 3 of 10)	exon (NM_001168488, exon 3 of 10)	1713.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	2.24622095945763	2.21048541580072	2.38661868963164	2.11306593806776	2.07531776406605	2.33492211176378	-0.754207344184335	0.396786243312392	1
Merged-chr5-113651173-2	chr5	113650673	113651673	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-783.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.11416563490275	5.20823191381017	4.95993582826133	4.94714144946642	4.57117602802205	4.53244523908968	-0.895064454958106	0.028558432403174	0.202444202027884
Merged-chr13-23519654-3	chr13	23519154	23520154	+	981.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11390.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	4.29980686645601	4.39496568301809	4.20880703227301	4.5779521377141	4.41488496510109	4.62473829526894	0.578488816878066	0.190839684906421	0.577428967011753
Merged-chr17-24021510-1	chr17	24021010	24022010	+	635.0	f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-16733.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	2.4047567177623	2.26289707504465	2.39760331062547	2.7239013467099	2.38990403501622	2.60362873196753	1.38092413848869	0.100180480988509	1
Merged-chr13-55216604-2	chr13	55216104	55217104	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 2 of 22)	intron (NM_008739, intron 2 of 22)	6822.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	3.49206295347955	3.59655828317537	3.68585967112256	3.769944415075	3.8466970515059	3.7036782194304	0.644560805292019	0.235651970162806	0.631908770006664
Merged-chr11-77607965-4	chr11	77607465	77608465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144825)	promoter-TSS (NM_144825)	-150.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	7.87545988445214	7.78139885381526	7.57522356026015	7.76306654007159	7.45041301154987	7.69739293381019	-0.166985413514395	0.481997546741781	0.825278347825795
Merged-chr11-6416175-2	chr11	6415675	6416675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	CpG	305.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	8.39103592450703	8.36241127310762	8.12626227519027	8.15469979750994	8.14052453328948	8.36501011695522	-0.116321453261848	0.594582918653331	0.879143746746643
Merged-chr7-127386846-3	chr7	127386336	127387336	+	904.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030226, exon 1 of 3)	exon (NM_030226, exon 1 of 3)	330.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	5.09311021821361	5.49866299476385	5.66970790901544	5.46213036438426	5.47073570919793	5.46174091878133	0.0606838353341776	0.866111223704473	0.968757596344316
Merged-chr6-121191792-4	chr6	121191291	121192291	+	915.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304773, intron 4 of 4)	intron (NM_001304773, intron 4 of 4)	8124.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	2.44896682561501	2.55592652155458	2.52593693963535	2.84619214409368	2.50837262510208	2.79077303766335	1.18297994586533	0.136287685998024	1
Merged-chr13-23696317-3	chr13	23695770	23696770	+	793.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010377, exon 1 of 1)	exon (NM_010377, exon 1 of 1)	459.0	NM_010377	107970.0	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	3.67642277624043	3.63989925561841	3.84608447924178	3.97250071554527	3.69989458950019	4.14415269703049	0.713409185913369	0.188627873376316	0.574222837446979
Merged-chr11-6629915-2	chr11	6629415	6630415	+	851.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3848.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	2.05745808568409	1.99262642269434	2.2242158220997	2.0118403600763	1.96015133244617	2.0386560651948	-0.703697525627914	0.447354918060835	1
Merged-chr16-10976273-4	chr16	10975734	10976734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	16887.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	7.6499222389747	7.2221588384436	6.91987989983442	7.45494203883018	7.45339139363286	7.02279618756142	0.0345620664401071	0.907791733717196	0.979049462233659
Merged-chr16-91411967-2	chr16	91411467	91412467	+	673.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008349, exon 3 of 7)	exon (NM_008349, exon 3 of 7)	5732.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.66930455767778	5.76731394406209	6.08815725494005	5.92973893107498	5.80738612316236	5.83260905505313	0.0272710242537824	0.931291194010552	0.984851910381307
Merged-chr8-77497672-2	chr8	77497172	77498172	+	757.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-19384.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.0868744938475	3.23665026248518	3.16028383255371	2.91729647212717	2.94813054260771	3.11721602764232	-0.777298149863897	0.243252882570426	0.640484331780268
Merged-chr9-44319292-2	chr9	44318792	44319792	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	990.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	5.51387413768318	5.45684830505537	5.7807240539532	5.4228870564936	5.36819765344694	5.58971754554878	-0.238851294969654	0.478183539168792	0.823624523176113
Merged-chr1-140175673-4	chr1	140175185	140176185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	7726.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	4.45667781019125	4.44808782348054	4.93877519615481	4.3878910055573	4.56334382565905	4.69041036939533	-0.176030941731089	0.696494002865204	0.919491129354085
Merged-chr4-126436261-2	chr4	126435761	126436761	+	821.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-6719.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	2.98628768541656	2.76486484540039	3.04023009885618	3.05001188407108	3.0678477657852	3.5370394436584	1.32162550299245	0.064197503970511	0.330124585030485
Merged-chr14-45661515-4	chr14	45661077	45662077	+	917.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3434.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.25438898438141	5.25117198170993	5.76251829616148	5.66753301713903	5.63607782207604	5.89273436980329	0.565257785255699	0.110838048612444	0.444841551070303
Merged-chr7-24838889-4	chr7	24838412	24839412	+	900.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045096, intron 10 of 11)	intron (NR_045096, intron 10 of 11)	20117.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	3.62901818035531	4.00770733077195	3.87057441895291	3.81591510028134	3.72235744923469	3.7352022207237	-0.28497332849952	0.597984468544688	0.880511769533228
Merged-chr3-84037102-4	chr3	84036550	84037550	+	958.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3111.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	4.41764420506452	4.52086536427583	4.47903620694174	4.40150559650208	4.65421091322413	4.81589811346236	0.383539221212101	0.374683255313823	0.758118627242714
Merged-chr1-88653764-4	chr1	88653256	88654256	+	910.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48435.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	5.76918706006501	5.58436126031583	5.83674881805751	5.57218638520289	5.45878883797322	5.59091923854738	-0.356407848906807	0.267270273440323	0.664581053738824
Merged-chr6-146674561-3	chr6	146674051	146675051	+	889.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	17333.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	6.75734674067706	6.54889672889254	6.48556339921955	6.02645608255082	6.15640704404859	5.79113391788321	-0.979456556035826	0.000908233964530557	0.0167306468276862
Merged-chr11-70969417-2	chr11	70968917	70969917	+	980.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	556.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	6.00223304497207	5.93277258062544	6.16839589228883	6.16080688787559	6.14361396742589	6.01054624664557	0.139574512130662	0.630332623346186	0.894709964383782
Merged-chr5-114175793-4	chr5	114175315	114176315	+	911.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133904, intron 1 of 51)	intron (NM_133904, intron 1 of 51)	10297.0	NM_133904	100705.0	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	4.66290380678512	4.6678305390647	5.07382805520052	3.60019524363063	3.26037117974381	3.65974468232689	-4.84613705608547	1.92575173557429e-10	2.40532041944893e-08
Merged-chr16-76284234-2	chr16	76283734	76284734	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	88815.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.32697684558421	2.33062921783774	2.35420910548409	2.55798668155068	2.35014271281935	2.55823388575531	0.964975018852956	0.240267552007988	1
Merged-chr7-100474844-4	chr7	100474321	100475321	+	822.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1830.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.72677477075809	4.76755133585283	4.23596695942436	3.97070461356483	3.99537645119807	4.20896598204559	-1.48475933233697	0.00233167855896688	0.0347384618683108
Merged-chr1-165646578-3	chr1	165646086	165647086	+	956.7777710000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12045.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.97035211990701	2.82712512400173	3.159872260786	3.04090129339935	2.86498559872217	3.17591916650621	0.186599888270384	0.78861250555522	0.94895503373255
Merged-chr2-167493931-2	chr2	167493431	167494431	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	intron (NM_030743, intron 1 of 7)	-1057.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	6.57311951572201	6.19622827221411	6.03534694873895	6.39336175875071	6.59220872935147	6.09711801757293	0.148024192002777	0.643844057276501	0.899990653857957
Merged-chr10-44004452-4	chr10	44003953	44004953	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172393, exon 1 of 20)	5' UTR (NM_172393, exon 1 of 20)	393.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.47319851199262	5.88923899900019	5.55580288658884	5.70945223718585	5.64308561445448	5.53099733559126	-0.0488503746826166	0.884435946690281	0.973505473274752
Merged-chr2-52496053-2	chr2	52495553	52496553	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	62558.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	2.75588444291232	2.83236237032865	2.88483477012272	2.84326549011417	2.72190535944305	2.83682800197965	-0.1251236978262	0.86010121387067	0.967441103100897
Merged-chr1-161735000-4	chr1	161734471	161735471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53524.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	3.91061306781154	3.6290238061805	3.58453234054193	3.86256395807983	3.79879742253254	3.8189001997199	0.336867154861272	0.535440452495855	0.853553445050005
Merged-chr14-63141150-2	chr14	63140650	63141650	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 8 of 9)	ORR1C2|LTR|ERVL-MaLR	18688.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.73019183670344	4.06067255864868	4.27791856743396	3.95414278418476	3.96132114355694	4.34395744476732	0.162607236511286	0.76115456111881	0.941143355343272
Merged-chr6-57796068-4	chr6	57795558	57796558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	29067.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.38389519065302	4.86604545147923	4.86789202023726	4.97388046539965	4.68144021964323	5.11211630733664	-0.312354277240241	0.459788197807309	0.813931928413551
Merged-chr1-135659251-3	chr1	135658752	135659752	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60811.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	6.23916114646698	6.29262359469943	6.09788857549545	5.32166281292737	5.21679060628984	5.23145374838914	-1.76151244054572	2.57488565602945e-08	2.13610254902192e-06
Merged-chr4-134127781-1	chr4	134127281	134128281	+	1000.0	f1_c57bl6.idr	exon (NM_080559, exon 3 of 3)	exon (NM_080559, exon 3 of 3)	972.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	3.38191029789344	3.26612047663691	3.45926768438194	3.6631020683358	3.52290004962686	3.88149928325818	1.17707754766553	0.0459012034815446	0.270760480596368
Merged-chr6-38532446-5	chr6	38531871	38532871	+	852.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2490.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	5.90476340963996	5.6580402648356	5.7627639267559	5.9792689684815	5.81652060177539	5.87494602758371	0.196820152322681	0.521996096935768	0.847400826543341
Merged-chr1-58741448-2	chr1	58740948	58741948	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	MLT1J2|LTR|ERVL-MaLR	10896.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	4.90674877226133	4.79032402138249	5.01892315023409	4.97873992990192	5.03174585012306	5.21247460193814	0.36829849622339	0.328647816875942	0.720880314701793
Merged-chr2-166204366-4	chr2	166203883	166204883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48700.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.82187765369404	5.25429153534397	5.22389552183393	5.85243960043151	5.57240052516003	5.5760823054237	0.37174891266943	0.321088101061074	0.714713352205534
Merged-chr17-35980364-1	chr17	35979864	35980864	+	1000.0	f0_balb.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	409.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	7.79062419591268	7.66200061847233	7.55805559010974	7.62755494936438	7.58807658838928	7.77743595718371	-0.0223837993872639	0.920933695278768	0.982463724790289
Merged-chr2-91091919-3	chr2	91091442	91092442	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4736.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	5.45670399353701	5.08817648509623	5.7839757747917	5.53553703731027	5.31700076508257	5.70162441182911	0.108865390388627	0.775287948815565	0.944594834759211
Merged-chr15-63614345-4	chr15	63613899	63614899	+	816.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134791.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.52116044520571	5.94699591033893	6.11554005110535	5.92589538569997	6.18320363659259	5.75400363993605	0.174350786976312	0.612343821741402	0.886694626735313
Merged-chr5-114771701-2	chr5	114771201	114772201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1790.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	5.01609624950546	4.96867970060764	5.3281450176984	4.77876419328999	4.77081000483637	4.83767634149344	-0.677903570882993	0.0813062445125724	0.37723486078968
Merged-chr2-154603865-4	chr2	154603413	154604413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-240.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	8.63077549699349	8.8004831704445	8.36476525556658	7.75928218007237	7.94681498187441	7.42284731682353	-1.23357715112043	1.43909578576105e-06	7.46535424822977e-05
Merged-chr11-115068762-2	chr11	115068262	115069262	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6723.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	2.58110786818187	2.54298568418943	2.40322405044349	2.65688226505088	2.66233094614384	2.97686272419872	1.41841237626704	0.0813603922407975	1
Merged-chr10-12836667-3	chr10	12836163	12837163	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	25072.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.65963684442523	3.4928206582291	3.6745473883541	3.3511716914146	3.3187417680665	3.69401290923068	-0.557314272997285	0.347814918572682	0.735793957862246
Merged-chr10-127645829-2	chr10	127645341	127646341	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	MER44B|DNA|TcMar-Tigger	2855.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	3.28636228092412	3.06759730425741	3.75084474303137	3.70141978228994	3.37445367976882	3.4649641507474	0.458411427335997	0.492366073857722	0.83104217378051
Merged-chr18-41951287-4	chr18	41950782	41951782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029942)	promoter-TSS (NM_029942)	-88.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	5.16460052463781	5.42873182144272	5.48790298240397	4.85663312458666	4.79754235443597	4.8402246414232	-1.12607790147896	0.00261603008398614	0.0379554718793929
Merged-chr11-117108851-2	chr11	117108351	117109351	+	724.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6321.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	5.47826179378407	5.52214484363378	5.47247190701628	5.33735525126092	5.48353305421242	5.53513456263921	-0.0759829050040238	0.817020989233923	0.956754861188725
Merged-chr6-66946118-3	chr6	66945589	66946589	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	49198.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	3.44508914976635	3.46653938766033	3.62354140466295	3.66301121681136	3.29183766494873	3.69319903519801	0.16171102670466	0.785982267768354	0.948279793763237
Merged-chr10-52284785-3	chr10	52284293	52285293	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 3 of 10)	intron (NM_025705, intron 3 of 10)	51174.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	3.16538304401198	3.12503849435432	3.03991497395872	2.84787575678549	2.66736082001292	2.7351907719154	-1.88706956660745	0.011040591946488	0.107786644923545
Merged-chr11-4095310-4	chr11	4094819	4095819	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026443, exon 1 of 4)	5' UTR (NM_026443, exon 1 of 4)	112.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	5.26726875660089	5.69567969366382	5.40440618757374	5.47667058702409	5.44087354073624	5.1000727269727	-0.224483440816972	0.541419614703985	0.85683609213704
Merged-chr1-185205244-4	chr1	185204744	185205744	+	928.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	1076.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	5.265536779546	5.1912397849754	5.24655425811035	5.21553340043564	4.87731300482711	4.84894880751193	-0.502960238921972	0.179637226158547	0.561125246422419
Merged-chr13-9134283-2	chr13	9133783	9134783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	40402.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.36047366838222	4.19804377200715	4.06936437346694	4.34164719338043	4.44584230117955	3.86689304326424	0.0912221226091798	0.85969832155939	0.967423539737178
Merged-chr1-138582467-3	chr1	138581968	138582968	+	683.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	LTR16A|LTR|ERVL	37289.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.25262925040641	3.22122869952938	3.15886554594363	3.11863553297071	3.02154120194808	3.55196550181525	0.125665243712388	0.850854587746689	0.964981271430729
Merged-chr4-106328908-4	chr4	106328410	106329410	+	964.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 1 of 67)	MTEb|LTR|ERVL-MaLR	12697.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	3.83034922195934	3.63838083451149	3.90327249088055	3.43311853882224	3.53383768880527	3.9250875375861	-0.509680467875404	0.377788266848372	0.76017368179697
Merged-chr3-84334027-4	chr3	84333557	84334557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-29282.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	3.44004644468325	3.55289264058742	3.47948465829438	3.40090581116387	3.31040066988994	3.70378877435952	-0.0721359875874637	0.903598590636278	0.977858102400597
Merged-chr6-34690988-4	chr6	34690495	34691495	+	829.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-18449.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.37820328096748	4.32012849792949	4.39125632106282	5.03156535814279	5.33080221098225	5.30926210619317	2.00225339622485	9.75283748181938e-07	5.31095615960227e-05
Merged-chr4-117917946-2	chr4	117917446	117918446	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2947.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	2.89745662690581	2.87959431251431	2.96767777245368	2.83117798812467	2.73779506734482	3.15185696397722	-0.0114923774889984	0.987179255202117	0.997161899445921
Merged-chr3-88951019-4	chr3	88950502	88951502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-720.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	8.00255682944402	7.97223503844244	7.98638468285956	8.02975174609704	7.88815095805981	7.61720548546023	-0.177494723765316	0.436258931883697	0.799472869647494
Merged-chr10-80878649-2	chr10	80878149	80879149	+	592.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	1.93777918175296	1.79417952270542	1.79518398108616	2.03005219003438	1.87474309491991	2.27892899874597	1.83205379840303	0.0788527219414752	1
Merged-chr12-113017607-4	chr12	113017103	113018103	+	949.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	3095.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.12920757265051	3.8909940442401	4.1569289191742	4.06594176939966	3.80394812748463	4.35097772231347	0.06061792457085	0.907542483630087	0.978944097635128
Merged-chr2-91486645-2	chr2	91486145	91487145	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 18 of 37)	B3A|SINE|B2	29114.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	4.74610312913157	4.92706745537241	4.29600247322141	4.56844481139473	4.58920582871231	4.63945570174602	-0.233383989777846	0.603491831610121	0.88262788611279
Merged-chr7-101904225-2	chr7	101903725	101904725	+	860.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282088)	promoter-TSS (NM_001282088)	-440.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	4.97968009078222	5.15371772894177	5.26189071823875	5.00226577248819	4.99527158167509	4.80690645748605	-0.398244620721075	0.291940272637312	0.689235268138963
Merged-chr13-67754845-1	chr13	67754345	67755345	+	1000.0	f1_balb.idr	non-coding (NR_027969, exon 3 of 3)	non-coding (NR_027969, exon 3 of 3)	289.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	6.15679790708226	5.62433410842756	6.05632490578573	6.34076828886525	6.57847108975515	6.16177050474558	0.703200044453335	0.0299775473162594	0.208821411225727
Merged-chr3-96579226-2	chr3	96578726	96579726	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027241, intron 7 of 7)	RSINE1|SINE|B4	-12425.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	5.99477775953897	5.82083584133203	5.83259515063503	6.09659355917259	6.11429126711731	6.01550719235679	0.332761382098566	0.256160703035465	0.653181532795262
Merged-chr1-127278527-1	chr1	127278027	127279027	+	1000.0	f0_balb.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73541.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.67397032859274	4.84721477943805	4.92276641576811	4.95797189221015	4.60409088348997	4.95235058800984	0.0565617955714011	0.889737564858974	0.974310314607431
Merged-chr8-83733563-1	chr8	83733063	83734063	+	607.0	f1_balb.idr	exon (NM_001163031, exon 4 of 18)	exon (NM_001163031, exon 4 of 18)	7748.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.1249685754276	4.09429222813731	4.4754599918544	4.17491983600318	4.20945819302415	4.65215965171664	0.320701082344049	0.515093382560531	0.84337265078831
Merged-chr2-155050916-4	chr2	155050471	155051471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015770)	TTS (NM_015770)	23526.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	6.88226576257806	6.96851413674121	6.66563014667241	6.58040934282978	6.6580877847696	6.19904306263847	-0.540839063204647	0.0569387545060669	0.307626770011091
Merged-chr10-62948772-4	chr10	62948270	62949270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177372, intron 1 of 20)	intron (NM_177372, intron 1 of 20)	1741.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	3.60230067135162	3.55336820177766	3.58769516106067	3.39766368168299	3.3182984855871	3.06748094509881	-1.17735357343871	0.0646676850179982	0.331338516334322
Merged-chr6-113646024-2	chr6	113645524	113646524	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	7557.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.63952418006377	6.67510693781937	6.70639720511976	6.44481783592715	6.4193155851055	6.51757096117552	-0.344149318551484	0.180058510556252	0.561720159111581
Merged-chr2-32709929-2	chr2	32709429	32710429	+	574.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130860, exon 5 of 7)	exon (NM_130860, exon 5 of 7)	2855.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	3.29895235266272	2.96890057757135	3.37407760034189	3.00844488141694	3.03324564872633	3.54442949251294	-0.0365018814054597	0.95864835452467	0.99015359851262
Merged-chr19-23114649-4	chr19	23114150	23115150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26576.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.99917218957825	3.06907574952123	3.11110156031548	3.25950062992579	2.89919854880928	3.18335967482574	0.264316798952654	0.694565922847059	0.919210273513843
Merged-chr11-5974385-2	chr11	5973885	5974885	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174054, intron 17 of 20)	intron (NM_001174054, intron 17 of 20)	18627.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	2.38473109554233	2.28157409506061	2.41569748766677	2.53002155562361	2.6126104484618	2.67992131499723	1.56701602992277	0.0564806523345991	1
Merged-chr10-80756390-6	chr10	80755868	80756868	+	942.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1165.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	5.3624878850849	4.71333353864122	5.05977902848381	5.62226526341264	5.51456254999225	5.23122896907753	0.78857148729629	0.0493614357704317	0.282369742702326
Merged-chr10-8741699-2	chr10	8741199	8742199	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 13 of 19)	intron (NM_175155, intron 13 of 19)	144371.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.80936186348087	3.66621023216752	3.89141524602113	3.83559317731637	3.83664845150041	3.91162947890001	0.232955188075253	0.653762043334629	0.90355007228283
Merged-chr8-95137932-3	chr8	95137445	95138445	+	936.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010631, exon 2 of 20)	exon (NM_010631, exon 2 of 20)	4595.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	3.80050212978457	3.68030062160898	4.16318282105584	3.80854975027794	3.84123271201112	4.05636213116486	0.0445790978245556	0.934191050860594	0.985707838096286
Merged-chr16-45733359-1	chr16	45732859	45733859	+	665.0	f0_balb.idr	intron (NR_073572, intron 3 of 4)	MTD|LTR|ERVL-MaLR	-8828.0	NM_019754	56370.0	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	3.22521082110329	3.27835723031292	3.38705307816023	2.82304862307736	2.58841160251542	2.88426717158987	-2.92082161627833	0.000362601570892446	0.00813243976032848
Merged-chr1-143916710-4	chr1	143916207	143917207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87442.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.70130781603728	6.93746495938164	6.82605452259313	6.81462581660856	6.82905876211679	6.91315619300408	0.0372617644932467	0.881923703768603	0.972991471105994
Merged-chr4-59823712-4	chr4	59823210	59824210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	18060.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.92784340877418	4.88671631721131	4.63265797804169	4.14435820941966	4.3990197633484	4.57641636264153	-1.09265505474591	0.0135125871689016	0.123759532542648
Merged-chr18-84588690-2	chr18	84588190	84589190	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	814.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	5.8481437564015	6.05576710837822	6.16881787640034	5.88971730871359	5.31549557124598	6.08770989199593	-0.413210860287342	0.252615667144583	0.649949738121886
Merged-chr1-172369781-2	chr1	172369273	172370273	+	702.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-6758.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	5.30585492639391	5.31670768719677	5.24048993125521	4.34310522479087	4.37450661133006	4.70995692026151	-1.87043889087591	3.7881067664259e-06	0.000173664345906758
Merged-chr6-83041297-1	chr6	83040797	83041797	+	568.0	f1_c57bl6.idr	intron (NM_013586, intron 4 of 13)	PB1D10|SINE|Alu	7073.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	6.28289573870592	6.24970270268104	6.37075767040449	7.14146420061913	7.17749657323585	6.91390906728327	1.24660647185866	1.26614707118591e-06	6.68063192766246e-05
Merged-chr19-7017832-4	chr19	7017296	7018296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1673.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	7.7371598678614	7.65312426841309	7.74194120649477	7.7028072310569	7.80262061773982	7.7554998106473	0.0656535845909802	0.75987140078212	0.940572672765463
Merged-chr11-16987541-1	chr11	16987041	16988041	+	632.0	f0_balb.idr	exon (NM_019549, exon 6 of 10)	exon (NM_019549, exon 6 of 10)	21177.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.14488028066892	6.06499603667738	6.20221768000202	6.07555200240604	6.11291792522336	5.74052389726429	-0.231791230920866	0.441471157780747	0.802629232779521
Merged-chr5-97111740-4	chr5	97111249	97112249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198422)	promoter-TSS (NM_198422)	-153.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	5.57968064739295	5.40349121955203	5.74471194225735	5.93246989966745	5.48199889841339	5.70440365430379	0.263019862601305	0.443356380510064	0.803773617218585
Merged-chr16-49855477-4	chr16	49854985	49855985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-169.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.58155058703737	8.55689188428253	8.58557343414599	8.37924803750844	8.45444754114913	8.18741842739876	-0.311293057412732	0.132450135626886	0.486982938678889
Merged-chr4-34843995-2	chr4	34843495	34844495	+	540.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013889, intron 1 of 7)	intron (NM_013889, intron 1 of 7)	38953.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	2.75179805250395	2.54440346733696	2.92611693042307	2.68133902625745	2.67865649192802	2.76285531241176	-0.202294418770143	0.789050007677676	0.949092571737679
Merged-chr3-80993548-2	chr3	80993048	80994048	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-42868.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	2.27093278727377	2.32974720688789	2.4128502118069	2.13800677018612	2.03121376232009	2.36113874808313	-1.14046999209121	0.212303332530422	1
Merged-chr16-94246150-4	chr16	94245638	94246638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	44153.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	7.46714531851921	7.58166219716998	7.12611093968125	7.39473268997774	7.67069005618067	7.10312264174171	0.0111132283443308	0.967948817533202	0.992633833139547
Merged-chr12-100090256-2	chr12	100089756	100090756	+	671.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-22075.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	5.82869462531257	5.86049763865677	5.91558928796261	5.82214655481788	5.87589492099928	5.77948975039379	-0.0632072108677729	0.83226700718067	0.960616839788396
Merged-chr10-68239241-1	chr10	68238741	68239741	+	1000.0	f0_balb.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39485.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.95914936350635	7.94068075913679	8.00700788357688	8.27343924608246	8.59745912252325	7.96337216898482	0.486231292724631	0.0496670650103318	0.283566429626711
Merged-chr17-56290342-7	chr17	56289798	56290798	+	984.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	213.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	7.37313975660474	7.32922484841699	6.63607609705943	7.22996634215689	7.38946408949951	6.97442610607274	0.0733982554214286	0.809334151108245	0.954721853010197
Merged-chr13-111809530-8	chr13	111809013	111810013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	-520.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.79582987700339	6.56850693224361	6.43452869923457	6.56700184870276	6.35745410126179	6.3380053067179	-0.304703847543773	0.273640274997416	0.671005315380766
Merged-chr8-10899023-2	chr8	10898523	10899523	+	625.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-899.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	3.37624729552044	3.21238283802527	3.32205713039223	3.33073903906125	3.21895994618999	3.2210101365769	-0.190141734170937	0.757323701957705	0.939861209437025
Merged-chr19-9936748-4	chr19	9936239	9937239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37206.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.71215453901274	7.68760774915436	7.09612048270455	7.17627797307366	7.18987460668442	6.54824673832787	-0.772234646763415	0.0138047072152018	0.125550560494318
Merged-chr13-92334703-1	chr13	92334203	92335203	+	671.0	f0_balb.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-20080.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	2.50520511038199	2.81266991611544	2.86500421830626	2.47001835311037	2.4296074071965	2.44135100626935	-1.73023953894365	0.0382970081151398	1
Merged-chr16-33591898-4	chr16	33591409	33592409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	73314.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	4.9113622644895	4.82434115637887	4.76688951596501	5.0548426785822	4.72896927187429	4.5810888237834	-0.0670886026607925	0.870272666626229	0.970065609722504
Merged-chr4-53108006-2	chr4	53107506	53108506	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51889.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.68786187467225	4.4051254770792	4.29122422459791	4.68030133612244	4.48681088470327	4.26305408239547	0.0342168188308857	0.940937123869901	0.986888338850358
Merged-chr5-149006885-4	chr5	149006394	149007394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-68.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	5.3800772523111	5.23001587046542	5.02785665611326	5.13122618093201	4.80001991027191	4.82400688496956	-0.634934632695973	0.100303777882098	0.422350931127658
Merged-chr11-100625671-2	chr11	100625171	100626171	+	854.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177790)	TTS (NM_177790)	2716.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	6.25257276189694	6.3075323856208	6.78380591685483	7.31395519917408	7.81340854342102	6.8430600969002	1.42666236112042	2.32906776841195e-05	0.000831577445397268
Merged-chr9-118632560-4	chr9	118632056	118633056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	25847.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.7027032581621	6.84998530612723	6.90210203128907	6.6304978069799	6.62565703137235	6.53804941253849	-0.33893624484319	0.183633069293582	0.566924177418387
Merged-chr2-26934829-1	chr2	26934329	26935329	+	545.0	f1_c57bl6.idr	intron (NM_198628, intron 1 of 18)	intron (NM_198628, intron 1 of 18)	760.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	2.97662894062624	2.86581358562434	3.01848781103707	2.87974008231523	2.83983010259393	3.25542693859931	0.207011715263528	0.768917475419578	0.942983923980385
Merged-chr6-124829099-4	chr6	124828618	124829618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	366.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	6.16542872474358	5.95517259454584	6.12099587815243	6.35816855477122	6.40598033725166	6.18169234267078	0.411312202001307	0.148498058725572	0.514071662108397
Merged-chr15-95800309-4	chr15	95799796	95800796	+	899.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	Lx8|LINE|L1	9453.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.82862731746167	6.75047800126138	6.81391969894142	6.42250006319068	6.92984039498732	6.85776938027831	-0.0595831593002231	0.829724658450141	0.960134151531511
Merged-chr16-87717457-4	chr16	87716941	87717941	+	823.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	L1MD2|LINE|L1	18487.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.33678417305458	5.23905300179146	5.21156399600052	5.41978042283286	5.72462667111823	5.43624230397646	0.541357006500593	0.116035922993517	0.454881550635583
Merged-chr17-35162646-2	chr17	35162146	35163146	+	669.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199044, intron 2 of 30)	intron (NM_001199044, intron 2 of 30)	2231.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	3.31965041139304	3.31090335732835	3.37235821104637	3.24703483941908	3.0636579397957	3.33357682435865	-0.497853007185275	0.425430356080714	0.793081865548651
Merged-chr4-86749533-1	chr4	86749033	86750033	+	652.0	f1_c57bl6.idr	intron (NM_184088, intron 1 of 31)	intron (NM_184088, intron 1 of 31)	978.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	5.03392567399386	4.94273531316225	5.11300964920364	4.65182563841055	4.91777106238088	4.90264708897995	-0.429481216394892	0.267243202840563	0.664581053738824
Merged-chr18-56479643-3	chr18	56479207	56480207	+	712.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 5 of 13)	intron (NM_001360917, intron 5 of 13)	47575.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.38338174795116	4.42992069273068	4.44686615049565	4.00867645004361	4.06053255714908	4.16290757862298	-0.948093604273498	0.0396270945157971	0.247451503224799
Merged-chr7-43562893-4	chr7	43562394	43563394	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	524.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	7.07659621476269	7.33937314098587	7.33051491726394	7.45208900882071	7.67113774957484	7.48295774908143	0.429384375567588	0.0731962799486474	0.355560261955779
Merged-chr8-117308462-4	chr8	117307946	117308946	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-40724.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.07189064333688	5.98078379254585	6.18162855493252	6.18590062106415	6.12951584093492	6.04782985636842	0.0873589425607237	0.760025309009272	0.940572672765463
Merged-chr17-70845080-2	chr17	70844580	70845580	+	799.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009372, exon 3 of 3)	exon (NM_009372, exon 3 of 3)	1697.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.26146738118401	3.3010470920396	3.79620342626498	3.53267807250062	3.44657551401048	3.35218421984955	-0.0739176990425088	0.906636157825016	0.978787664113116
Merged-chr10-80622491-4	chr10	80621967	80622967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134002)	promoter-TSS (NM_134002)	-313.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	7.96679697604526	7.55035734165197	7.36391562294932	7.90707730374185	7.45697858847621	7.47626583354152	-0.0387525095031947	0.890387620925363	0.974513293810689
Merged-chr16-97963373-2	chr16	97962873	97963873	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-751.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	6.78154595789469	7.12738054469359	6.7988419836179	6.82600735133309	6.8782121729504	6.64647586436782	-0.193208019960793	0.468579934886816	0.818673566064062
Merged-chr4-132732545-4	chr4	132732044	132733044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201368)	promoter-TSS (NM_201368)	2.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	5.48017536987302	5.34078818380978	5.33245431785166	5.12775808817737	5.4680149219684	5.16557339667108	-0.222890507393653	0.532422173765471	0.851971173271146
Merged-chr6-128799658-4	chr6	128799150	128800150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11009.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	7.27352611485775	7.18405685276405	6.67432534545691	7.26790816051294	7.49499892640372	7.34565914691209	0.436622941855112	0.111976722226005	0.446976492543948
Merged-chr3-79438438-4	chr3	79437954	79438954	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 3 of 4)	intron (NM_001142953, intron 3 of 4)	93078.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	3.81998915807623	3.79403707476396	3.48876837305944	3.98302727983435	3.74667578465038	3.99077309183462	0.602358358645096	0.278165722871027	0.675475432925552
Merged-chr1-57574716-1	chr1	57574216	57575216	+	552.0	f0_balb.idr	Intergenic	Intergenic	-168042.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	2.67044225265253	2.59476177207789	2.8402145627986	2.68902019529474	2.39424771984561	2.54271473634746	-0.894551759927565	0.263118134027733	1
Merged-chr19-41405996-2	chr19	41405496	41406496	+	686.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-20926.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.04791922414505	3.18537842396328	3.40283516745622	3.3813177070993	3.14427453228565	3.31093135585892	0.270592266443397	0.673549592042343	0.911518491577771
Merged-chr7-143024513-4	chr7	143023979	143024979	+	703.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	Lx7|LINE|L1	18820.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	4.90303534485475	4.73977443914884	4.38603883393372	4.90146218728176	4.90546156746629	4.76692474169202	0.353815122002746	0.40413141750779	0.779358170625725
Merged-chr10-75504958-4	chr10	75504441	75505441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL40-int|LTR|ERVL	12440.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	5.9907666658745	6.35681048620145	6.0288442562554	6.12462920830811	6.37930698828361	5.97025239325612	0.0646173143758112	0.836293706749471	0.961960888484752
Merged-chr8-70543806-2	chr8	70543306	70544306	+	838.5	f0_balb.idr|f1_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4131.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	7.81596010380356	7.74982681874052	7.58432348432185	7.43682496313962	7.57156099854147	7.45976600526952	-0.335954963345764	0.136323030663112	0.493336840191226
Merged-chr17-57335872-4	chr17	57335382	57336382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22804.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.94782831783636	6.0750910032321	5.81327507489069	6.35732681458698	6.55593991743458	6.25165528043185	0.747817251781108	0.0108449104249266	0.106388034265184
Merged-chr5-43887515-3	chr5	43886990	43887990	+	820.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	18681.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.34727302512038	4.55176124491292	4.74874835305086	4.42904507120098	4.51333680041608	4.66560799772062	-0.0388637739793711	0.929127101438002	0.983987942057929
Merged-chr12-80214248-2	chr12	80213748	80214748	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	46123.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.95019507545945	4.76717260190749	4.72554115923632	5.14940135803691	4.88928779139364	5.1866421361302	0.544918890854189	0.163068733788138	0.536648599946344
Merged-chr14-37109543-4	chr14	37109019	37110019	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206684, intron 1 of 2)	intron (NM_001206684, intron 1 of 2)	582.0	NM_001206684	70045.0	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830|Gpr15l	RIKEN cDNA 2610528A11 gene	protein-coding	3.27755251416534	3.87387126650322	3.67495380669149	3.47423122223913	3.0750124874661	3.79352538960369	-0.526179380763522	0.447278595713113	0.806316645191341
Merged-chr9-65001635-3	chr9	65001134	65002134	+	812.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20083.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	5.90745283453112	6.11470850639832	5.95765496629822	5.83425206962447	6.15423254043867	5.94761374318867	-0.00948957087196404	0.975149267310155	0.994454548709104
Merged-chr8-68884472-1	chr8	68883972	68884972	+	771.0	f0_c57.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	3917.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	3.42584785327663	3.13245370414294	3.70811370670863	3.84385658512671	4.06649826541927	3.67374795190668	1.5302129962117	0.0154170105657982	0.135218574381674
Merged-chr2-84716483-2	chr2	84715983	84716983	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	5.98626267239424	6.40683651023415	6.26214764719917	6.48442907542521	6.70406573403957	6.42019145982675	0.52004218393989	0.0763069370857066	0.363709703901004
Merged-chr17-56339035-2	chr17	56338535	56339535	+	950.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	12985.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	2.86219339447899	3.05786129616151	3.25978264841517	2.90036535257477	2.8022203555985	3.11358015881635	-0.582466892865683	0.411785889040648	0.784045307489855
Merged-chr8-4325187-4	chr8	4324699	4325699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010485)	promoter-TSS (NM_010485)	-11.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	8.16517175224985	8.26491255291205	8.22364846891369	8.14188587344531	8.06841026129584	8.16263916056853	-0.134856501811188	0.509616942262132	0.840445299624642
Merged-chr14-48133249-1	chr14	48132749	48133749	+	638.0	f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	12380.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	2.44520982270439	2.369318927928	2.4230656689927	2.03973795551437	2.1143853686528	2.23804480076134	-2.17287056033785	0.0234049447498556	1
Merged-chr10-20771360-1	chr10	20770860	20771860	+	542.0	f1_balb.idr	Intergenic	MLT2F|LTR|ERVL	-46282.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	8.076439380392	8.0229933335258	7.51757701791911	8.25998390474978	8.71235761431598	7.86514942089694	0.608219817260526	0.0432834096260484	0.261226223845959
Merged-chr17-47505056-4	chr17	47504480	47505480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081636)	promoter-TSS (NM_001081636)	-71.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.37370268076282	5.46417287925737	5.38369313249579	5.26662175259156	5.46724341002576	5.53367134242672	0.0302730511016011	0.928389965988267	0.983802612059568
Merged-chr6-34944659-4	chr6	34944152	34945152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025573)	TTS (NM_001025573)	23704.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	4.72873027842409	4.86225412174	4.71394541977194	5.03807524696287	4.92857932096837	4.85951852442844	0.384161125082901	0.320792672730055	0.714576061099323
Merged-chr2-11766702-4	chr2	11766201	11767201	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 3 of 20)	intron (NM_001348235, intron 3 of 20)	10884.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	4.97713335045333	4.73239418801999	5.09772104694513	4.50981798399017	4.75987252612223	4.99928162730363	-0.388003226185725	0.353919215305311	0.741034414559363
Merged-chr4-62407959-4	chr4	62407450	62408450	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	673.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	6.90897163071796	7.56596523596836	6.92031604909206	8.02913462354103	8.22278767555441	7.6518608322303	1.17875034741104	0.000110667685556529	0.00308904286473923
Merged-chr2-83767103-4	chr2	83766570	83767570	+	908.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 8 of 29)	intron (NM_008402, intron 8 of 29)	42673.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.60031080102061	3.45790644887719	3.74822512395933	3.66399324340502	3.65209988123767	3.66512099313152	0.2077466027353	0.708049059656299	0.923606271223831
Merged-chr11-76581429-4	chr11	76580981	76581981	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3742.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.19149877118411	4.39303736160456	4.66381107205109	4.18446784015148	4.46482385383534	4.23570930929096	-0.292638665364944	0.538771177241111	0.855475830625121
Merged-chr8-39652441-2	chr8	39651941	39652941	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9763.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.11129813181787	5.31300394374211	4.94985318971497	4.80301923384126	4.91343978634898	4.86356388906618	-0.6017498493743	0.115782267950971	0.45424164041984
Merged-chr12-20227289-2	chr12	20226789	20227789	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	588490.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	2.99546772063991	3.18152605161377	3.26015343439746	3.09359251880265	2.86779424713518	3.3836209300475	-0.096095212501872	0.889805938429308	0.974313026039223
Merged-chr3-152782225-4	chr3	152781732	152782732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	68132.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	6.32827023128438	6.74712250909237	6.44373310689454	6.2990883173876	6.62536539530958	6.22353326144594	-0.189233219765406	0.530064234664731	0.851070276054813
Merged-chr7-126776883-4	chr7	126776385	126777385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026875)	promoter-TSS (NM_026875)	-90.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	6.52040427852115	6.42437388542083	6.28046787248663	6.25795572844831	6.51118772953353	6.23675143434563	-0.109595126789904	0.697358151618814	0.919919734291394
Merged-chr12-17761912-2	chr12	17761412	17762412	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71103.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.25031288777334	3.63388516940814	3.57262817920302	3.69880449168375	3.29086380273432	3.74453133087682	0.328372435564238	0.599096489232846	0.880902871165758
Merged-chr4-123921949-6	chr4	123921496	123922496	+	956.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	4563.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.58395708941182	7.77980439135406	7.36199156759448	7.42320701332754	7.91984790550679	7.41919858906801	0.0391133944502979	0.885450563995323	0.973611377589001
Merged-chr16-30397866-2	chr16	30397352	30398352	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9322.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.87908859845404	4.66463721872898	4.37580986081405	4.13331137992529	4.08002692163567	4.20755620246673	-1.38418914876842	0.00294055044721586	0.0414901746673091
Merged-chr16-30821342-2	chr16	30820842	30821842	+	929.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221619.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.32460504973487	4.30610286969252	4.17225568085229	4.02234439900676	4.00591970126637	4.09823168312634	-0.665668877552692	0.157604835248768	0.529063009716043
Merged-chr2-48827565-3	chr2	48827063	48828063	+	714.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	13454.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.28514862636412	3.14550097728504	3.13466209051767	3.32033096494735	3.27502834269852	3.43464756578218	0.603283893454038	0.332075671860635	0.723353110424764
Merged-chr8-36173217-2	chr8	36172700	36173700	+	804.375	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	17190.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.260555905487	3.77259809479576	3.73393596724638	3.02130610468262	3.08517166465333	3.28090293718503	-1.94931512210223	0.0042219417905481	0.0541543598748152
Merged-chr17-35194445-3	chr17	35193956	35194956	+	778.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105939)	promoter-TSS (NR_105939)	-51.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	4.85838997405428	4.71052310855916	4.29948611585718	3.85304009308845	3.80004133528931	4.12694439496015	-2.03475824304005	5.90563719634355e-05	0.0018112652408159
Merged-chr15-78772592-4	chr15	78772081	78773081	+	711.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	864.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.37218721657356	5.16383471066786	5.72514892307115	5.46584812664745	5.49331051163153	5.25132050515867	-0.0257510772046568	0.943956756558745	0.987495247303971
Merged-chr17-88065390-2	chr17	88064889	88065889	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-98.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	8.34690536528709	8.15145584162377	8.37372817224747	8.38853526869132	7.74676860722894	8.33789066204433	-0.149615477571323	0.566869455660526	0.867634455258659
Merged-chr8-46851787-4	chr8	46851294	46852294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112049.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.38979683980133	7.35030777544791	7.16434088170955	7.309184033977	7.56629479378886	7.34096026026056	0.15623185864307	0.514920046362224	0.843311862380436
Merged-chr3-27439859-4	chr3	27439354	27440354	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68503.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	5.3468372317758	5.52294294172836	5.22122858826731	4.92132191374178	4.74683907268609	4.93504240391654	-1.08156928854675	0.00347423156166358	0.046929198016705
Merged-chr11-76583673-2	chr11	76583118	76584118	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	3.55607340048337	3.41347448186159	3.45991793166019	3.66129867879584	3.3426099339741	3.74047429334901	0.383020440232778	0.517407816358957	0.844537090247943
Merged-chr6-83455496-4	chr6	83454989	83455989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 1 of 11)	intron (NM_001347313, intron 1 of 11)	903.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	7.24201054065432	7.26405584087904	7.45830964732512	7.318879232609	7.30829537596054	7.45520269888848	0.0583455318265206	0.802475074302181	0.953198534492307
Merged-chr3-51337807-4	chr3	51337284	51338284	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	2860.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	6.3181781055697	6.3109120937554	6.12953649502712	6.26664277562406	6.29817766397841	6.27473535902683	0.0295753773438771	0.914432473734485	0.980912729144991
Merged-chr11-70907035-2	chr11	70906535	70907535	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019400, intron 7 of 17)	intron (NM_019400, intron 7 of 17)	62274.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	3.10737737848592	2.99919559185417	3.23570495342396	3.15734135650027	3.11353907641535	3.0165532546187	-0.0568690036608785	0.930879708898454	0.984702308464168
Merged-chr18-57957751-3	chr18	57957206	57958206	+	680.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79028.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	2.7650043620312	2.6526731078526	2.91873181828213	2.93403105542511	2.90820370471437	3.37286594488865	1.46413502158637	0.0486615400166562	0.280023280023011
Merged-chr16-33756631-4	chr16	33756083	33757083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37454.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	7.53552209488212	7.55715568561672	6.92470871395681	7.10138146284587	7.38894941423804	6.80877621169625	-0.368645656429132	0.224339156680011	0.619090360474606
Merged-chr7-80775013-4	chr7	80774513	80775513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	28318.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.43061028576554	8.81665227374449	8.05256942327497	8.2798383336467	8.74291236769839	8.02296872816551	-0.119549178758574	0.690134564422977	0.917679571025745
Merged-chr3-152912379-4	chr3	152911942	152912942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69765.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	5.3511110654954	5.67734639822201	5.22807229880023	5.62774818456198	5.68011918557634	4.98930494615888	0.0772926516107828	0.846415207915279	0.964017504522256
Merged-chr6-129353865-3	chr6	129353353	129354353	+	736.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 3 of 5)	intron (NM_177686, intron 3 of 5)	3609.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	4.14476804402622	3.69513893138434	3.87457366913593	4.34723695175247	4.1591360257809	4.32720654035581	1.01640232197189	0.0486735455187703	0.280059346935399
Merged-chr17-43334334-4	chr17	43333831	43334831	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26100.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	2.7771427400576	2.53855998278423	2.86340488834501	2.57644607516595	2.72398367792013	2.8180949748307	-0.114824506345924	0.880566249832909	0.972540920690587
Merged-chr3-95676589-1	chr3	95676089	95677089	+	854.0	f0_balb.idr	3' UTR (NM_144899, exon 18 of 18)	3' UTR (NM_144899, exon 18 of 18)	11328.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	5.56207457576796	5.54681995124486	5.52551908715296	5.81993356316717	5.72270195279849	5.26806216598028	0.172175488674137	0.617591261654149	0.888813561750322
Merged-chr2-16184138-2	chr2	16183638	16184638	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 35 of 38)	MTD|LTR|ERVL-MaLR	-172166.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.43564388030247	4.34629013449412	4.63651814928568	4.15761682936271	4.33866446660715	4.29279184853425	-0.529019279614038	0.243465876299115	0.640680222488828
Merged-chr1-191724851-4	chr1	191724329	191725329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	6434.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	4.98796529079718	5.07804815957947	5.38898699488903	5.40898507594305	5.26995725505546	5.42284357403702	0.433087865982245	0.230280829153907	0.626162780047656
Merged-chr16-24973216-4	chr16	24972739	24973739	+	865.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86400.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.9421257235602	5.12499416792572	5.0044741579978	5.19148074141647	5.00289975445906	4.88307362065166	0.017055999239634	0.963874326397852	0.991213692099629
Merged-chr1-191907655-4	chr1	191907173	191908173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030669)	promoter-TSS (NR_030669)	-146.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	6.4420392366029	6.1868365212985	6.50034109210362	6.43365797024049	6.1224695029234	6.30287931152608	-0.147893116728604	0.609490353507338	0.885223831988804
Merged-chr5-52190590-4	chr5	52190088	52191088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	-42.0	NM_001042620	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	7.97180782968806	8.20823484938967	7.75707403902371	7.96968639843705	7.54080405267975	7.7059899001408	-0.354228727116563	0.162123455700244	0.535486206014047
Merged-chr17-10724253-3	chr17	10723758	10724758	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115933.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	3.83104795111564	3.91650386389033	3.81052284786369	3.6111878270881	3.56374637423307	3.55991103327377	-0.939930323044703	0.0824941338666849	0.379907676044893
Merged-chr3-96767251-4	chr3	96766743	96767743	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	ORR1D1-int|LTR|ERVL-MaLR	39632.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.85369117562379	4.78831177457691	4.83266465278926	4.86815824063447	5.10408251326766	5.07614316098149	0.433340727461806	0.25478599717653	0.651833515344505
Merged-chr3-88296979-4	chr3	88296462	88297462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009836)	promoter-TSS (NM_009836)	37.0	NM_001357024	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	7.5151913416537	7.37080983458101	7.37486885795514	7.33649240128427	7.51135276587964	7.2616032654662	-0.0629980908774906	0.787818859465808	0.94877064431094
Merged-chr8-94919666-5	chr8	94919142	94920142	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	3.65151402920635	3.58738890533127	3.47780191178903	3.75228687389164	3.89492521372192	3.87171975100515	0.879355815730222	0.107247408458594	0.437112977848289
Merged-chr5-96982926-2	chr5	96982426	96983426	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14763.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	6.0113342778628	6.14056166759856	6.04076719723966	5.99112068618561	6.44131534040178	6.38628247283166	0.376445358832751	0.21141669008049	0.603943450931238
Merged-chr15-59680842-5	chr15	59680440	59681440	+	992.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32286.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.32968804783636	7.48080563730519	7.28927517094163	7.400906903016	7.62250421995686	7.09576657502268	0.0449255085344349	0.861444714470854	0.967819025542415
Merged-chr8-72160363-2	chr8	72159862	72160862	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-838.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	5.97394258885482	6.38262421518391	6.1263534876392	6.30096784665706	6.31334303441578	6.46101723669388	0.297460356840644	0.311430171751807	0.706493681156094
Merged-chr11-96890110-4	chr11	96889618	96890618	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26396.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	6.8107621195987	6.72623087083838	6.69645588182615	7.2018749055046	7.36945249229699	6.88212569165728	0.657824690162626	0.0124957322809947	0.117604896690081
Merged-chr14-27185467-2	chr14	27184967	27185967	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MTE2a|LTR|ERVL-MaLR	41474.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.46310490722235	4.29656235630951	4.61042965730667	4.09101519014163	4.26336013686153	4.56172710594107	-0.376683398899123	0.422144481568192	0.79098189652931
Merged-chr16-16099957-4	chr16	16099441	16100441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	46910.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	3.55497114763583	3.82427053092375	3.67928653455847	3.53189439083435	3.3956729443538	3.64544672095724	-0.606600526057349	0.287863029964035	0.685245511851696
Merged-chr18-38352254-4	chr18	38351753	38352753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-13260.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	5.06674239771081	4.94724096821607	5.13467474243838	4.94740107917006	5.14330106352019	4.88060546570117	-0.0873766567708398	0.816748677240381	0.956754861188725
Merged-chr2-164442572-2	chr2	164442047	164443047	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	641.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	4.63817835365046	4.47592689194404	4.35866084054565	4.54674231182508	4.45969146890511	4.51483368432445	0.00596252291953915	0.988946743597906	0.997469976378469
Merged-chr13-112344623-4	chr13	112344111	112345111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168405)	TTS (NM_001168405)	56093.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	6.39782181685645	5.98165758369934	6.0008933841192	6.53450199979074	6.4362636615933	6.402855470202	0.513443944853815	0.0829233614739784	0.380987557121549
Merged-chr10-8059739-4	chr10	8059232	8060232	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103609.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.04623547903317	5.6841435615014	6.12194509007228	5.83914715943598	5.95048934296749	5.89297567569009	-0.104863690949301	0.739439483404898	0.934245371298156
Merged-chr16-97962295-4	chr16	97961774	97962774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	CpG	348.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	8.64770005632826	8.663528790337	8.15349842843272	8.48763112007987	8.41782882970065	7.98265200206909	-0.270626638660994	0.3006597089395	0.697365586816021
Merged-chr11-50023080-2	chr11	50022580	50023580	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2251.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	2.866536439721	2.93328580825815	3.15419371717753	2.93386634627292	2.58387043990662	2.75335925130355	-1.12519644286852	0.136988224769664	0.494491180713817
Merged-chr7-123328536-2	chr7	123328036	123329036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	41379.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	3.85525766366209	3.65936188034517	3.83860323081956	3.75901313522004	3.6270098091422	4.17796314536857	0.253849186895547	0.649460645164317	0.902160587683553
Merged-chr2-166806880-2	chr2	166806380	166807380	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	1299.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	5.33660713233396	5.63228985740395	5.13780156147504	5.01672475474224	5.16688060710252	4.9019947165031	-0.716278639565774	0.0604623509546722	0.318454949882033
Merged-chr15-6571081-4	chr15	6570562	6571562	+	975.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8785.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.6233119396674	6.09401675302191	6.74778871405899	6.69907948584043	6.53476104350847	6.87708379213995	0.307990811076368	0.320280713468132	0.714117217900186
Merged-chr14-20702000-3	chr14	20701483	20702483	+	813.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_029446)	TTS (NR_029446)	-1044.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	6.16690752530978	6.1921502079206	5.76789319532472	6.28264099148465	6.28624941345777	5.71612023165315	0.114634264891021	0.734021373489555	0.932325051544019
Merged-chr10-52273202-4	chr10	52272688	52273688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 2 of 10)	intron (NM_025705, intron 2 of 10)	39569.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	4.09378612374136	4.2455058708153	4.13817230840646	3.90538306087863	3.8585017785793	3.6327220624509	-1.05892258872189	0.0417962095284902	0.255737848551115
Merged-chr7-98771336-3	chr7	98770818	98771818	+	807.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63794.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.1795204312253	4.39339038315161	3.86221927281071	4.83172503222764	5.05280782290885	4.80343823307069	1.79085896116004	0.000340088216226116	0.00772772293631022
Merged-chr11-50225950-6	chr11	50225523	50226523	+	909.513916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	688.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	6.83493407316099	6.97383140209062	6.99611152059845	6.77097207695819	6.5413959937916	6.80292177869869	-0.361343528282263	0.158588413796474	0.530400126017003
Merged-chr10-24637338-2	chr10	24636838	24637838	+	657.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008813)	TTS (NM_008813)	41896.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	5.36089312148826	5.56322985780378	5.83216894879765	5.30348537910715	5.50017713829287	5.12285545796079	-0.499115523972572	0.171806921702645	0.550152408737105
Merged-chr9-90111622-2	chr9	90111122	90112122	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	B1_Mur2|SINE|Alu	3198.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.5063525463606	5.52422640817853	5.16417684018213	5.9797422897	5.91492062600191	5.81112198910174	0.887703036451041	0.00742954859414571	0.0816093134150627
Merged-chr14-40985840-4	chr14	40985337	40986337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-18941.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.01020001764674	2.7803022285649	3.01585926021671	2.77469633999478	2.78651403024606	3.03039911764769	-0.360523623820958	0.613750625554532	0.887300906025089
Merged-chr18-75906118-2	chr18	75905601	75906601	+	677.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	85923.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.01250879018695	2.97229187134043	2.95788120089397	3.35911586341397	3.9038545831285	3.68059063965866	2.96961999674413	4.26039568548608e-05	0.00138260142042873
Merged-chr5-121837790-4	chr5	121837308	121838308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-949.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	8.61799126966502	8.7635170288332	8.59421134609616	7.95312976624922	8.40180611932138	8.08952012346197	-0.687097667073158	0.00294800369430059	0.0415758459992141
Merged-chr2-181837886-4	chr2	181837370	181838370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153594)	promoter-TSS (NM_153594)	16.0	NM_001291211	245867.0	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	5.57718094605837	5.38892806275019	5.74894568019209	5.47778550717357	5.64198596041625	5.49004334535412	-0.0482341977618906	0.885402983874266	0.973605130359095
Merged-chr7-27493249-4	chr7	27492764	27493764	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6060.0	NM_198048	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	2.90974257287363	2.9576200741063	3.05166345143105	3.00336310153956	2.92476499102258	3.23467221856874	0.379369896096921	0.575757003214883	0.87137539535607
Merged-chr4-117289344-7	chr4	117288850	117289850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310731, exon 1 of 11)	5' UTR (NM_001310731, exon 1 of 11)	105.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	7.69213453604721	7.23502212079467	7.18581216033891	7.5710250579624	7.01019133846875	6.95876542762151	-0.26922471237337	0.371882782634822	0.755841610252976
Merged-chr19-4164726-4	chr19	4164227	4165227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134148, exon 10 of 10)	3' UTR (NM_134148, exon 10 of 10)	-1344.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	5.88233934188412	5.52927990688955	5.97347897516735	5.62206697846789	5.87509517547302	6.0765936195393	0.114870115784442	0.733126199779514	0.932024947384361
Merged-chr14-72685053-4	chr14	72684584	72685584	+	879.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	24919.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.86552643523216	3.91400312897075	3.85832233067938	4.10834721305012	4.10996966241215	4.07761460638224	0.6547980217734	0.181486439401067	0.563787133106409
Merged-chr1-136656730-3	chr1	136656258	136657258	+	717.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26638.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	4.99944804761802	5.40820027321542	5.61669521694211	5.22534978615298	5.07292705131712	5.16045833330467	-0.414218443272237	0.279499790992172	0.677205609521119
Merged-chr6-7858686-3	chr6	7858183	7859183	+	942.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052993, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	13459.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	3.28005107204699	3.16955534211656	2.88544455769328	3.16674046001577	3.05382888562719	3.14914880573652	-0.0270004586473264	0.968473201688996	0.992792165162521
Merged-chr10-120163023-2	chr10	120162523	120163523	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	38574.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	3.18609558804236	3.10598245361375	3.21010729225026	3.23831468147387	3.354996885818	3.1645418777397	0.39517619096422	0.530183974244359	0.851070276054813
Merged-chr3-27198438-2	chr3	27197938	27198938	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	B3|SINE|B2	15434.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.57450481011768	4.56823001473044	4.0355275082158	4.09029379820417	4.20837881662992	4.3901972794755	-0.525206852263065	0.289424101081801	0.687087035743639
Merged-chr2-27767004-13	chr2	27766478	27767478	+	953.1538699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56395.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.19351632382726	4.82757626569281	5.28535843983363	4.9471594527691	4.75363442349419	5.40405897885823	-0.124855822953714	0.767777036490063	0.942700046486211
Merged-chr15-59413397-4	chr15	59412910	59413910	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	39212.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.86087201853078	5.74534963475298	5.47100018775135	5.55636625030137	5.64612336112872	5.56454942507942	-0.223386710298797	0.494546374512968	0.832098209532918
Merged-chr19-44264385-4	chr19	44263877	44264877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-29299.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	5.57396873352445	4.89223797285842	5.28328710907682	5.84291961112101	5.73789571191103	5.47484272480435	0.790606965284044	0.0397708754967234	0.247995729041618
Merged-chr7-89309255-5	chr7	89308735	89309735	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	ORR1F|LTR|ERVL-MaLR	29552.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.07339417120734	6.0588661510258	5.75644342754708	6.17491229263653	6.29404342983023	6.26331064104884	0.446890669722487	0.129099716689618	0.480567674419975
Merged-chr2-170240281-4	chr2	170239785	170240785	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97610.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.20473820659347	4.38934334331779	4.69362605015294	4.34524286511583	4.63415681728056	4.79388390194659	0.409468035665755	0.376295860479362	0.759143697747295
Merged-chr12-52503824-4	chr12	52503357	52504357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12220.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	7.16535224178909	6.57227490057493	6.73864952221482	7.23322341103563	6.49568754065334	6.63132102115918	-0.0348703924215089	0.916890071104422	0.981431795618389
Merged-chr12-55016600-3	chr12	55016094	55017094	+	874.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30258.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.02935532084258	4.20865369994787	4.51870442716238	4.24765154102087	4.40360850954991	4.38260923393547	0.241376838078954	0.611192829705693	0.885964478139286
Merged-chr19-8721879-2	chr19	8721379	8722379	+	648.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	B1_Mm|SINE|Alu	1490.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	4.36916689581663	4.32233967209024	4.37662289868514	4.09942926098905	4.65170736115142	4.52750654915787	0.250820783677781	0.593878150953741	0.878683686912033
Merged-chr6-88044512-1	chr6	88044012	88045012	+	687.200012	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	MIR|SINE|MIR	505.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	8.47338092032896	8.60517358403249	7.97977206874308	8.18531672725968	8.34166673489892	8.08882855925881	-0.244440946633455	0.3329388759336	0.723927708416112
Merged-chr2-26914012-2	chr2	26913512	26914512	+	995.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013721)	TTS (NM_013721)	-2409.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	3.64132091090345	3.31654375519624	3.86202416509043	3.60380603295382	3.56231438893297	3.92989721078132	0.282612313386906	0.638577227633954	0.897621994373951
Merged-chr8-13647840-4	chr8	13647365	13648365	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	29722.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.82809166418482	6.77656300510482	6.82117539995347	6.50106859670163	7.06718010509636	6.4969819261851	-0.115890498909324	0.693621737137957	0.918960880648635
Merged-chr19-46523213-4	chr19	46522679	46523679	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	21531.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.56312639129667	8.01909723973906	8.10696961109429	8.19642174714529	8.37788487026687	7.9031723130063	-0.107712767772033	0.683394262760496	0.915427157113777
Merged-chr11-103281924-4	chr11	103281434	103282434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.57991476188985	6.30362153784064	6.65534851431631	6.24444657298218	6.56604867463949	6.28678773367181	-0.214883471205198	0.459080409935603	0.813375481603532
Merged-chr8-79159578-4	chr8	79159059	79160059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	MLT1J|LTR|ERVL-MaLR	89024.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	4.653854886073	4.57224324653983	4.40808824069988	4.5368766428589	4.37946853600964	4.08158567412154	-0.503046456100741	0.276697832522862	0.674041208769616
Merged-chr10-20915833-4	chr10	20915343	20916343	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36704.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.05492561178453	3.10946827228139	3.3337846524097	2.97636910593954	2.91568126001151	2.82210293472009	-1.19491523900829	0.0874030994006877	0.39195026111196
Merged-chr4-132077148-2	chr4	132076648	132077648	+	774.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1835.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.69679764646878	4.4046875841273	4.72945547750517	4.61588434526599	4.4520249195062	4.51711657006655	-0.206548139728593	0.630829402153463	0.894912420650784
Merged-chr6-3463176-4	chr6	3462668	3463668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 9 of 9)	intron (NM_178899, intron 9 of 9)	31330.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	4.33249828199374	4.47400558541178	4.35582987031398	4.07427543776953	4.02669883671083	4.50444830255609	-0.494639684098752	0.302772085944035	0.699382001681875
Merged-chr6-22398237-3	chr6	22397746	22398746	+	857.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42165.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.40411032942755	4.75785304841129	4.67844203483068	4.33533003231874	4.50173830496313	4.95368572928498	-0.0193961727975733	0.966488589737414	0.992315915860502
Merged-chr8-46595799-4	chr8	46595297	46596297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	intron (NM_001001184, intron 6 of 14)	21430.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	5.93057356572997	5.91870741507968	6.0811875103333	5.80921955572302	5.90181558745416	6.16199127705005	-0.0277400348672168	0.927212794409264	0.983584626679457
Merged-chr14-58321511-4	chr14	58321003	58322003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	248817.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	6.70604267494757	7.12116688360695	6.80937834495132	6.86794705562539	7.10327924662134	6.85280843822878	0.0864594945667676	0.749393829926862	0.937311153542289
Merged-chr15-78597973-4	chr15	78597470	78598470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	923.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.56147542488132	6.62460397126867	6.56243812898585	6.98318299078874	7.1901398121306	7.04446967655392	0.767217582746186	0.00207137731911621	0.0317822540971827
Merged-chr8-46497773-4	chr8	46497265	46498265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6799.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	6.05271009713283	5.68082961975615	5.04470248749962	5.7477774840275	5.63612646709596	5.30444779791549	-0.162080506077489	0.698670641593558	0.920439942142444
Merged-chr13-67728789-4	chr13	67728268	67729268	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027969)	promoter-TSS (NR_027969)	405.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	5.84669606677712	6.30150677162381	6.23160943172745	6.85979146389589	6.7311654811215	6.16108684166879	0.793177541721541	0.0161212933878424	0.139571384893933
Merged-chr15-79229246-4	chr15	79228752	79229752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008837)	promoter-TSS (NM_008837)	79.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	6.14759923938715	6.22645916791995	6.26604280648488	6.30168620810412	6.44592431500244	6.36481217408292	0.272269636973678	0.318317201492095	0.712118559492236
Merged-chr12-112619235-4	chr12	112618754	112619754	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-793.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.76086170917113	7.9067493406193	7.67916645237028	7.67606023703207	7.98198627719695	7.18524422306436	-0.172185311331803	0.540120490428893	0.856321966495957
Merged-chr15-57762381-4	chr15	57761874	57762874	+	871.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67707.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.03738466945301	4.0408059844856	3.97479764352903	4.71043837219245	4.44645416745544	4.70941860683877	1.60365943799728	0.000603988567237799	0.0122100779161134
Merged-chr7-44553082-2	chr7	44552582	44553582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	883.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	4.89746711459924	4.4343962735447	5.10331769488475	4.78128183142505	4.96766896055212	5.25670498784797	0.388971858311475	0.377893662841303	0.760222685045705
Merged-chr4-138943914-4	chr4	138943426	138944426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23186.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	5.36816946389782	5.60254578227188	5.56618606057297	5.40861554929838	5.54633002554349	5.45727673962032	-0.0742623588118435	0.822978233175524	0.958203585272257
Merged-chr7-66226072-4	chr7	66225569	66226569	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	116554.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	3.33641065730694	3.25251113420365	3.3103979882946	3.33416963049911	3.34659358241589	3.43664888306947	0.281482591184329	0.638004206351291	0.897380718500389
Merged-chr7-27508770-4	chr7	27508273	27509273	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 5 of 5)	B3|SINE|B2	9449.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	5.30470477966387	5.2403040323809	6.04265244758837	5.63704707205112	5.56702368654071	5.93758543407168	0.271020919121231	0.493007556029686	0.831208279358962
Merged-chr2-124778071-2	chr2	124777571	124778571	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124490.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.51547859465482	2.44522365273852	2.63016565205542	2.50699643268559	2.45884456517296	2.51655585037448	-0.215077117383764	0.783537334398886	1
Merged-chr2-45194862-2	chr2	45194362	45195362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77420.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.93499144210375	6.9645485674892	7.08570474687093	6.9912144236877	7.40884435629788	6.9981421584841	0.251102409661174	0.338919282176859	0.728919083443527
Merged-chr19-10605455-4	chr19	10604949	10605949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015735)	promoter-TSS (NM_015735)	-176.0	NM_015735	13194.0	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	7.81371725051355	8.1186458824329	7.52005186525276	7.64233814065156	7.90359422462038	7.40219116755719	-0.25034959056339	0.361825418647254	0.747478680384173
Merged-chr2-101766795-4	chr2	101766308	101767308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30899.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.17789503902227	6.06747090835778	6.39615506145911	6.41666994806945	6.51267653869575	6.67241567935479	0.529807778594455	0.0598263471977915	0.316628335939056
Merged-chr2-156522586-2	chr2	156522086	156523086	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24990.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	2.81070694683494	3.07598130217696	2.9076076114763	2.680107239528	2.76969793063883	2.7964738967276	-0.963003988550462	0.18726256362872	0.572185054142865
Merged-chr17-47521752-4	chr17	47521273	47522273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	16722.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.68129034646868	5.77005739426897	5.69081326237844	5.46722213144372	5.2027967213188	5.38362598146228	-0.698729914051918	0.0338074352195599	0.224846061046211
Merged-chr4-132509795-4	chr4	132509253	132510253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	703.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	6.63301520605043	6.86073869636012	6.76650301480382	6.78204304037453	6.95141171008154	6.79442915851939	0.144605288754149	0.570923881055182	0.869288072801053
Merged-chr13-37339235-2	chr13	37338733	37339733	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6112.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.21563333181859	5.25501008596969	5.22788781431954	5.48670806742025	5.75738206179691	6.02043577989804	1.01292815336866	0.00364625396143467	0.0486136035287704
Merged-chr9-72133331-4	chr9	72132831	72133831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21512.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	7.24773893239327	7.44080969483752	7.2917678180011	7.08765209288886	6.84285278142635	7.01743240962392	-0.526087627851787	0.0305618311079471	0.211387268730679
Merged-chr1-174049570-4	chr1	174049044	174050044	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146716)	promoter-TSS (NM_146716)	-831.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	3.65578655628053	3.38456047663526	3.71865835412933	3.47464997395263	3.34081562939695	3.58588316912251	-0.454784643455272	0.440875089259175	0.802071286421878
Merged-chr6-54971825-3	chr6	54971289	54972289	+	851.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	-128.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.95527538736663	5.97293227254302	5.88425659716487	5.79330953078021	6.15613674012172	5.8195474562818	0.0106267542419723	0.9726911912865	0.993868590220018
Merged-chr9-116136196-2	chr9	116135696	116136696	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	39167.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.03422373613102	7.3089408606203	6.33211156620548	6.07008732692588	6.07275888442312	5.88779452729881	-1.5252468783524	7.5398856757415e-06	0.000314317561435569
Merged-chr4-82918824-3	chr4	82918321	82919321	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154662, intron 28 of 35)	intron (NR_154662, intron 28 of 35)	-33670.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	2.57901232358118	2.47282698464281	2.88459151149951	2.53728473560332	2.4865269004483	2.33271876801947	-1.14033054956157	0.179929622223518	1
Merged-chr18-74214745-2	chr18	74214245	74215245	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1467.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	3.2351474907129	3.62801491468786	3.64322985162223	3.74806130906083	3.47781393598291	3.60890361907802	0.356160132766179	0.554751143988846	0.862960052141034
Merged-chr17-88552149-4	chr17	88551678	88552678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	22054.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	7.15636711507168	7.2541563911671	7.25052024909814	7.33218046164124	7.47526387975875	7.0833036707681	0.144300792208035	0.556021302095376	0.863563611847916
Merged-chr17-24550435-2	chr17	24549935	24550935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013630, exon 1 of 46)	exon (NM_013630, exon 1 of 46)	485.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	7.13603369095374	7.11791918623783	6.91148730838696	6.8321243312449	6.57822411388226	6.89846627027648	-0.457097364851919	0.0767197212067221	0.36492851781678
Merged-chr6-54313603-1	chr6	54313103	54314103	+	745.5	f1_c57bl6.idr	intron (NR_033635, intron 4 of 13)	intron (NR_033635, intron 4 of 13)	-13409.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	3.41128815316012	3.52098212192654	3.85154504123813	3.37809246807321	3.36746121614637	3.91896580838057	-0.0991129707893217	0.87470399052497	0.970754540400126
Merged-chr1-39525967-4	chr1	39525470	39526470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9731.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	3.86227185512107	3.76536182564644	3.71979942763872	3.65861278987109	3.57180109674102	3.78968339188887	-0.393197006772905	0.465304681307512	0.816953745827049
Merged-chr15-76080583-4	chr15	76080091	76081091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356629, intron 1 of 12)	CpG	279.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	7.90793488966918	8.06053133581219	7.81221146256674	7.81885181523681	7.95859547011347	7.68313258251689	-0.148767522998226	0.511216575389429	0.841331921585713
Merged-chr6-47453883-3	chr6	47453388	47454388	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012042)	promoter-TSS (NM_012042)	156.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	6.78436351119088	6.66734710357311	6.54159967945715	6.72473952344296	6.45681498792983	6.66865622607116	-0.0917653407265924	0.730878182404409	0.931175666746392
Merged-chr4-63404717-2	chr4	63404217	63405217	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1272.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	2.59171655424829	2.83355770202054	2.48945563960212	2.62025491539502	2.53951466066327	2.81854432143391	0.0541006840192986	0.945960669112428	1
Merged-chr11-61737269-2	chr11	61736769	61737769	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 8 of 11)	B1_Mur4|SINE|Alu	-16470.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	2.91025986461323	2.89569904315034	3.12501336656553	2.87902539924337	3.03364901658977	2.96685292555776	-0.0552937318552885	0.935794585661536	0.985953563515988
Merged-chr13-95679974-3	chr13	95679475	95680475	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-16945.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	5.22908747557168	4.94334086684056	4.85500972099813	3.97013831457836	3.58264283503881	3.92044423808297	-3.48280664975264	1.54664763084591e-10	1.98907969192313e-08
Merged-chr2-119742798-3	chr2	119742335	119743335	+	731.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146125, exon 1 of 7)	exon (NM_146125, exon 1 of 7)	498.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	3.12127384891511	2.86771612956523	2.98709573255349	2.84972075070742	2.66409970244239	3.1167953153303	-0.538583827222017	0.464886642671216	0.816631332252401
Merged-chr9-99575856-4	chr9	99575378	99576378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031403)	promoter-TSS (NM_031403)	79.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	6.76373330391917	7.18308447112806	6.94401651201354	6.95199853328419	7.1254318954466	7.02937137736899	0.093439057108498	0.720344375583843	0.928142072321482
Merged-chr3-131642987-5	chr3	131642459	131643459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289479, intron 13 of 13)	intron (NM_001289479, intron 13 of 13)	76927.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	5.85718865430375	5.94654867519258	6.03542834806286	6.15025151209156	6.67062346525119	5.9784404639247	0.631944285528174	0.0554433138478635	0.302796955835999
Merged-chr6-113645050-4	chr6	113644533	113645533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	6566.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	8.05322718238218	8.15017758300876	7.77447660255415	7.86328318946643	7.98344928358847	7.8045649767538	-0.170587451138794	0.457033976755166	0.811993709825292
Merged-chr13-37761027-3	chr13	37760511	37761511	+	819.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65027.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.57092133584966	3.47812516293622	3.45201266368002	3.32391449870221	3.13702564003993	3.29705474370791	-1.00610081384927	0.098683781382355	0.418985614923104
Merged-chr9-120058840-4	chr9	120058341	120059341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	9455.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.74103153594725	5.49584855979977	5.66666276621056	5.23172886951982	5.18405186834893	5.29884156775745	-0.782360646844471	0.0202144432721072	0.16258918153833
Merged-chr3-131894593-4	chr3	131894159	131895159	+	956.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190633.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.44583027839899	3.62503572807465	3.51982149069431	4.04957010323551	3.90596790947539	4.05648646671371	1.54929943623512	0.0047641033194033	0.0592631946480654
Merged-chr10-62499679-2	chr10	62499179	62500179	+	865.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	AT_rich|Low_complexity|Low_complexity	8078.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	2.52619971511378	2.59341343522658	2.81526271952763	2.80387118333991	2.57412946114534	2.64286274480415	0.168775232496775	0.826121794681914	1
Merged-chr11-53853799-3	chr11	53853297	53854297	+	791.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	5459.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	3.51732059213741	3.43089922052887	3.45022741235773	3.83218159780122	3.73388469719029	3.57988469624355	0.902185578337736	0.109563146662502	0.442292368886739
Merged-chr2-122450476-4	chr2	122449994	122450994	+	854.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 6 of 17)	MTC|LTR|ERVL-MaLR	9674.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	3.60402518254024	3.68789358108671	3.92360899906791	3.58288390247393	3.46558002840637	3.80422986440261	-0.416989967807193	0.461510749492968	0.814992635038861
Merged-chr2-153444385-5	chr2	153443905	153444905	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	74.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.22613116501399	3.85857506584564	4.02062144594258	3.80337070474352	3.72735322699836	3.99407207169515	-0.634556746349652	0.225802493720701	0.620701256044383
Merged-chr2-4929471-4	chr2	4928976	4929976	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010726, intron 5 of 8)	MTC|LTR|ERVL-MaLR	10480.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	3.15066634315412	3.13342885790601	3.43661660661947	3.37685043360447	3.41497187825391	3.22828476151667	0.431412278671217	0.493087010041528	0.831208279358962
Merged-chr5-124026088-2	chr5	124025588	124026588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6172.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.0171846263728	6.95392279287037	6.6381340808185	7.12455213368836	7.12332135777099	6.71473437103572	0.186175729414723	0.499059716707147	0.834235910315373
Merged-chr2-30980018-4	chr2	30979549	30980549	+	940.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144885, exon 3 of 9)	exon (NM_144885, exon 3 of 9)	1892.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	4.19527169793778	3.67253182799654	4.2989319188482	4.19079504846682	4.61862061456734	4.27843897693644	0.817839729044319	0.128843708781733	0.479915274645705
Merged-chr11-82021655-3	chr11	82021156	82022156	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	3.76026771119694	3.14755893351761	3.47063589465942	3.77061694811634	3.51159754318998	3.59858512865988	0.499256648903754	0.434662114983193	0.79859050240724
Merged-chr4-59037783-1	chr4	59037283	59038283	+	617.0	f1_balb.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	2627.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	3.57141281386687	3.06122591799631	3.30787534478936	3.0979200974998	3.03020730090999	3.0863060211023	-1.11070383384989	0.10095677406965	0.423786054625959
Merged-chr18-63694810-1	chr18	63694310	63695310	+	542.0	f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-2451.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	2.98805069585843	3.07907056996813	2.93672099253633	2.71045978864005	2.84758161445985	2.69216498313712	-1.24818563600121	0.0913191725270801	0.402163951923006
Merged-chr7-123294808-2	chr7	123294308	123295308	+	775.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 15 of 19)	intron (NM_001316713, intron 15 of 19)	75107.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	2.8424587407186	2.73174932340548	3.06014568425119	3.17634505608614	3.03044574253315	3.29884579924915	1.36101166563662	0.0536432966375049	0.296947598260604
Merged-chr7-34388593-4	chr7	34388121	34389121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	1084.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	7.33644677008793	7.82759149767107	7.60650357611629	7.65317688890661	7.73827500395767	7.6906868885579	0.126068787608819	0.607603592561824	0.884628619253764
Merged-chr8-110909352-2	chr8	110908852	110909852	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6864.0	NR_052009	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	3.4092135259911	3.65158027691649	3.42810286293403	3.6828506844006	3.5850601044024	3.61167751868219	0.426230785794156	0.456641173937673	0.81178051534004
Merged-chr1-52112505-2	chr1	52112005	52113005	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6933.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	3.84193011930552	3.60128610164199	3.79842071723649	3.68469929651352	3.79754828761158	3.86752203658229	0.112390493582682	0.833672481357343	0.961104751385188
Merged-chr2-43748607-7	chr2	43748099	43749099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153820)	promoter-TSS (NM_153820)	-225.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.56815213580172	5.919823278215	5.5915777549538	5.96052283252295	6.04447124248715	5.84472331142733	0.438587562959003	0.170201319312066	0.547518417123576
Merged-chr6-34905570-1	chr6	34905070	34906070	+	768.0	f0_balb.idr	exon (NM_001013366, exon 5 of 15)	exon (NM_001013366, exon 5 of 15)	5261.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	3.58432796756404	3.39650283502554	3.54208780639887	3.22379487380761	3.06504883260923	3.34280178734308	-1.22168732800062	0.0512221361667219	0.288481413020065
Merged-chr4-53062343-2	chr4	53061841	53062841	+	990.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 31 of 49)	intron (NM_013454, intron 31 of 49)	50461.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.48824162680538	2.5254331800429	2.84670725286135	2.69065155318251	2.30917928067139	2.86208993820706	0.0693708804694403	0.935428907424593	0.985852245513165
Merged-chr9-21015946-4	chr9	21015459	21016459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	19.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	8.15063125222117	8.02247746207108	7.80320998788527	8.08358978260437	8.16342791595433	8.11383132220144	0.163024326554653	0.459957388320748	0.814054033257842
Merged-chr1-138541719-4	chr1	138541205	138542205	+	918.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	78052.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.31449314021292	6.54722640726242	6.27940347893863	6.30804051523204	6.37108736230186	5.84424527317726	-0.299019629123647	0.333528144335833	0.724468518545896
Merged-chr2-165791884-2	chr2	165791390	165792390	+	730.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 22 of 23)	intron (NM_027230, intron 22 of 23)	66283.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	2.09513404533442	1.99362979348582	1.96398020710694	2.23480236285079	2.1500860245918	2.37696815174386	1.76977522470931	0.0638360439252357	1
Merged-chr17-35866560-4	chr17	35866053	35867053	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-62.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	6.64538433143158	6.41301963065087	7.38786114540413	6.78262519321948	6.63122375689124	7.42633720809678	0.166303099810656	0.657392106351888	0.904798742244684
Merged-chr11-3914293-4	chr11	3913773	3914773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	391.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	5.36205849192574	5.43372006137611	5.7908963622268	5.05397587470096	4.76989050909893	5.24501689084346	-1.03003334310968	0.00732798469829403	0.0808254176531879
Merged-chr1-10233086-4	chr1	10232584	10233584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102430)	promoter-TSS (NM_001102430)	-414.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	6.53066850046169	5.89763984703381	6.28508355535764	6.43670505761938	5.8711708849486	6.18287330518329	-0.139522169692615	0.683810434398614	0.915502793651487
Merged-chr7-80014985-2	chr7	80014485	80015485	+	632.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-9829.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.56997915498513	5.70188595637993	5.87612971932612	5.78506849332877	5.83415061525861	5.81680145471387	0.180885254606332	0.561026948277695	0.865361577760505
Merged-chr10-26779569-3	chr10	26779052	26780052	+	655.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	7040.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	6.02998190251668	5.85236281860452	5.88878024611009	5.58584267868346	5.51685932197272	5.58749233433101	-0.673536139004073	0.0294924095906767	0.206557002204535
Merged-chr5-114916939-4	chr5	114916450	114917450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6290.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	3.38654647843301	3.34852035405817	3.27692743096023	3.30221570383955	3.15727724631212	3.29123432760049	-0.37693918454822	0.538554131293003	0.855272681680087
Merged-chr3-107037729-1	chr3	107037229	107038229	+	647.0	f0_balb.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	1567.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	2.77878002318057	2.50276667666996	2.71156701100544	2.64177240549215	2.46359946436112	2.96072961809125	0.168122777047136	0.834388175160877	0.961299492933729
Merged-chr4-62205424-1	chr4	62204924	62205924	+	617.0	f0_balb.idr	intron (NM_001290351, intron 1 of 3)	intron (NM_001290351, intron 1 of 3)	2778.0	NM_001290353	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	3.3056807505449	3.51244851013444	3.24947217134206	3.44579631178095	3.10656173950111	3.37992390353304	-0.199431184383549	0.753570802777479	0.938563718495545
Merged-chr11-54156085-4	chr11	54155580	54156580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	55156.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.4879575471933	4.92641368708982	5.27326168040721	5.08426537198742	4.99158424346358	4.84465553698582	-0.559208443970839	0.158807248540963	0.53059884101335
Merged-chr1-184733751-3	chr1	184733245	184734245	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1252.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	6.0578035838202	5.78917659895536	5.8887337244117	5.48565652649964	5.84013804866066	5.39127809385999	-0.566189210530596	0.0954412832540492	0.411795607830071
Merged-chr9-66886451-2	chr9	66885951	66886951	+	979.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	33254.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.48829824260088	7.68957608000454	7.34475451263695	7.47351355553356	7.42311044308698	7.56813240142069	-0.0529632454160463	0.822333146196669	0.958041123079214
Merged-chr5-32135808-4	chr5	32135306	32136306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	-666.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	8.99092054374629	9.31831611538595	8.91452055042516	8.73221316719762	9.0845600560117	8.76235931960159	-0.295508160755436	0.204125856832505	0.594459761140946
Merged-chr10-128269357-2	chr10	128268857	128269857	+	888.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133997, exon 2 of 2)	exon (NM_133997, exon 2 of 2)	-1141.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	3.91619496591777	3.55605919164031	3.75518268016166	3.76591212490776	3.94049962060168	3.71954040451854	0.215803701316113	0.694415385582585	0.919210273513843
Merged-chr1-9804752-3	chr1	9804246	9805246	+	824.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	Lx9|LINE|L1	6616.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.18457724305952	4.17776223615478	4.48847177181524	4.63708576284979	4.35832688139787	4.74455944933114	0.766239333606428	0.0948938410349766	0.410690040821717
Merged-chr17-7169976-4	chr17	7169472	7170472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-143.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	5.81403807442097	5.93657167782452	5.77972625065605	5.68452090953387	5.89216865765718	5.47079278095491	-0.25075811724092	0.439559224955432	0.801216871474848
Merged-chr2-28441006-4	chr2	28440500	28441500	+	829.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	-6941.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	2.91297305994339	2.95453344875562	2.7657268697696	2.96967406670391	3.13549312506863	3.08557602266479	0.860051891991326	0.218351947217219	0.612472797118277
Merged-chr4-136449166-2	chr4	136448667	136449667	+	578.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20594.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	5.24164574674826	5.23817337802781	4.45623527829015	4.12181312053753	3.92136615348832	4.11792674328229	-2.52446804193967	5.18017307950048e-07	3.02690899999351e-05
Merged-chr6-125218761-1	chr6	125218261	125219261	+	563.666687	f0_c57.idr	intron (NM_001080557, intron 2 of 3)	intron (NM_001080557, intron 2 of 3)	3180.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	4.16453745165081	4.27470951742984	4.13417320796308	4.28636864097999	4.41000301359663	4.59023483986182	0.616710130295298	0.177751641540048	0.55882263155115
Merged-chr12-108792333-4	chr12	108791835	108792835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-976.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	8.75255076176903	9.01349539194949	8.43930097047156	8.4390545661886	8.76567190888318	8.30499886565754	-0.328238760027012	0.198964969248082	0.587423864896856
Merged-chr1-64222814-6	chr1	64222327	64223327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101438.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.13829818494868	4.94205044053449	5.33144827536142	4.91443938574453	4.97929610624215	5.30693007511679	-0.145858950125174	0.706143868490238	0.922878730238431
Merged-chr19-55235027-2	chr19	55234527	55235527	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6209.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	3.81398969408005	3.61389241924908	3.85379750409014	4.08656302756691	4.12224515346158	3.97412933832409	0.952815331417624	0.0635030234171795	0.32835940669256
Merged-chr2-158134033-3	chr2	158133509	158134509	+	874.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	12383.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.56009704855596	7.76025099616934	7.74214589396659	7.25861347906211	7.553753053132	7.44272022626676	-0.381924510455071	0.104227880348867	0.430610908842793
Merged-chr16-95931712-4	chr16	95931213	95932213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2636.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.67648838188297	5.72179774834125	5.85520248506571	5.90837592786967	5.3226815371414	5.55048857114899	-0.247841637932764	0.476306379987965	0.822520021424582
Merged-chr3-95669019-7	chr3	95668512	95669512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	10291.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.42775515590009	8.22438104762633	8.13791161421575	8.11521278207373	8.32806151744546	8.00617983735684	-0.154677756680047	0.495495059764873	0.832500902975543
Merged-chr14-21090543-4	chr14	21090040	21091040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243041, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	14388.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.36875587264013	4.04441697883123	4.26731379486545	3.99138997186578	4.06650357908577	4.24681856564028	-0.37116870590096	0.443954270092164	0.803884349333946
Merged-chr14-54518756-4	chr14	54518253	54519253	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1283.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	3.6535379884317	3.56238264105734	3.62075841421495	3.77263033050825	3.43992395569899	3.52781518704763	-0.0907442489950725	0.873407300827774	0.97040331531529
Merged-chr10-22732404-4	chr10	22731904	22732904	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-957.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	6.45962089131317	6.90694142197273	6.99445233749984	6.57683655734517	6.27127773126961	6.68873145923897	-0.455526114327038	0.129594292166726	0.481590007708854
Merged-chr7-114305651-4	chr7	114305162	114306162	+	692.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29546.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	3.00350914494862	2.95167439130816	3.12688851441067	2.67277378751955	2.96508593621772	3.08633134929881	-0.509463612071234	0.482408487239403	0.825591225960845
Merged-chr15-95826617-3	chr15	95826113	95827113	+	955.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3459.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.20363884208244	7.11382200042923	6.59246855464106	7.52258970770697	7.67246027777657	7.04464093291763	0.656062841726309	0.031025477284235	0.213194074973539
Merged-chr4-86668777-4	chr4	86668273	86669273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	1286.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.43261920669177	7.75403974764819	7.42144261775365	7.46559529972294	7.83397991335599	7.28451098234053	0.0138815046218013	0.958722175933455	0.99015359851262
Merged-chr11-11557861-4	chr11	11557355	11558355	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68589.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	4.30460609287434	4.27956468562269	4.32767710581792	4.26037830903268	4.42768118630771	4.30594853232716	0.0948905433381923	0.831804107398134	0.960487873555148
Merged-chr1-16747471-4	chr1	16746967	16747967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59011.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	4.88714763013127	4.8514416711598	4.69151292314286	4.34983919443311	4.38319002124417	4.59699411115033	-0.916739021766981	0.0285828610823946	0.202600111163122
Merged-chr9-98330334-3	chr9	98329832	98330832	+	979.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33762.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.91253439740514	6.08622598933318	5.62450932175428	5.31276341863673	5.41411707542771	5.28289171794126	-1.03427279322718	0.00219697157169454	0.0331751036026986
Merged-chr17-81679812-3	chr17	81679313	81680313	+	628.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	58574.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.23671546635892	3.0952331724542	3.23325952826036	3.33887211759291	3.11534332107532	3.41485586655821	0.417394121917203	0.510663891663449	0.841022022619749
Merged-chr13-49309267-4	chr13	49308772	49309772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015759)	promoter-TSS (NM_015759)	-64.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	7.50461143697344	7.65535568416859	7.0746042162646	7.45917623806086	7.87493210343732	7.50296975546777	0.274745925924888	0.320230929703641	0.714116509165426
Merged-chr9-51077190-4	chr9	51076736	51077736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033534)	promoter-TSS (NM_001033534)	-142.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	3.95358801067659	4.01547135450726	3.82084459036846	3.9300442545275	3.68336305417236	3.78578286062901	-0.430958176628466	0.409309675641898	0.782658446423422
Merged-chr2-125972243-2	chr2	125971743	125972743	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175154, intron 8 of 9)	ORR1E|LTR|ERVL-MaLR	-62415.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	3.07841421447894	3.03212148552855	3.19539695571502	3.1418166409389	3.43487384862328	3.26720377340182	0.814196068059441	0.206207455021252	0.596809057329073
Merged-chr9-62971464-2	chr9	62970964	62971964	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	PB1D10|SINE|Alu	9415.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.48654128571309	6.40886051093996	6.46157730373172	6.49981320703261	6.92489973469068	6.40777307088627	0.310151758366875	0.283841706759004	0.681495289012097
Merged-chr4-115785000-4	chr4	115784448	115785448	+	966.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181040, exon 1 of 9)	5' UTR (NM_181040, exon 1 of 9)	134.0	NM_181040	230649.0	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	4.78370282332107	4.55668809893744	5.16459446937803	4.88209028534101	4.67894883008706	5.07313115439554	0.0712307736411211	0.868998671433047	0.969772902205443
Merged-chr3-19197677-2	chr3	19197177	19198177	+	671.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	ID_B1|SINE|B4	9382.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	3.68409668210112	4.17839229670846	3.90026261469689	3.86604474374186	4.02097682579041	4.20320054737868	0.269439286045202	0.616537212777889	0.888391945757827
Merged-chr12-117558122-3	chr12	117557592	117558592	+	887.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	41613.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	3.71294808672133	3.67117945614386	3.51685692988314	3.88825362390526	3.84579469450216	3.90979906613908	0.776519001322444	0.14800661326667	0.513331427480852
Merged-chr11-76480717-2	chr11	76480217	76481217	+	598.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-12252.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.75955374840924	7.10066362676824	7.0505200469276	6.84565867749076	7.29377972968828	6.96106175865561	0.121958497459337	0.657768255777486	0.904859102731141
Merged-chr12-21417719-4	chr12	21417203	21418203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011739)	promoter-TSS (NM_011739)	-267.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	6.32266134075936	6.71458410535086	6.14265561814951	6.71040918878068	6.29949289451075	6.52421997460032	0.148031829616859	0.635227958367858	0.896439353901449
Merged-chr7-80353685-2	chr7	80353185	80354185	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 21 of 23)	intron (NM_172903, intron 21 of 23)	10548.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	3.5385962171694	3.5923935932877	3.96396880470039	3.1835455056275	3.3461234029332	3.39392594506187	-1.4678250066085	0.0184766395574907	0.15335702985533
Merged-chr12-71051251-4	chr12	71050701	71051701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	B3|SINE|B2	35234.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	4.23199166566708	4.4888884674587	4.42102516663707	3.90296167542085	4.29676301675314	4.27297390517011	-0.569706676963723	0.240767009613278	0.63779309813394
Merged-chr2-114175364-4	chr2	114174879	114175879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009702)	promoter-TSS (NM_009702)	-40.0	NM_001290788	11834.0	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	5.528371822799	5.60769933577193	5.24676029306774	5.43946493927778	5.42171600064504	5.1347036101111	-0.254925951767285	0.472289661018082	0.820550293768681
Merged-chr17-43572422-2	chr17	43571922	43572922	+	910.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	L2|LINE|L2	3971.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	4.86396712324311	5.17487209436212	5.22279383107121	4.576347761651	4.64398917162993	4.96569042204242	-0.805892012762719	0.0481615434454807	0.27823896981485
Merged-chr1-153749812-2	chr1	153749299	153750299	+	963.125	f0_balb.idr|f0_c57.idr	intron (NM_011882, intron 1 of 8)	intron (NM_011882, intron 1 of 8)	373.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	6.86412223814199	6.993460676894	6.37243659681617	6.32460534507192	6.51679269704021	6.19718785421928	-0.669111862765399	0.0279086215258461	0.199510758377405
Merged-chr11-77411488-4	chr11	77411012	77412012	+	915.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-52401.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.33327983737625	4.30232851295125	4.29077547172338	4.53057964871366	3.94618654721733	4.17240653047534	-0.192321290746583	0.696726257983161	0.919584129006226
Merged-chr3-84749430-3	chr3	84748939	84749939	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-66138.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.37745533619346	2.48922842758688	2.71518317809106	2.15160442452978	2.09590067245468	2.22561971765432	-2.95773670975272	0.00374032751954955	1
Merged-chr1-166380144-4	chr1	166379644	166380644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	977.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	7.54202500289724	7.8089257571143	7.38318955199894	7.19948404898412	7.3258834404957	7.25749826832507	-0.491092304536892	0.0450140151926633	0.267594925780605
Merged-chr9-21593507-4	chr9	21592960	21593960	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-629.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	7.34747007762374	7.50174865393376	7.21394045154592	7.33480909319663	7.20283230395263	7.12061010737649	-0.209435252537573	0.383886835669825	0.765070437173117
Merged-chr2-131224250-2	chr2	131223750	131224750	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-9813.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	2.34638665273863	2.44123516190769	2.53093532287047	2.4545254938551	2.10447650620814	2.47967635335698	-0.533764568553367	0.551176804215042	1
Merged-chr16-17210199-4	chr16	17209698	17210698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	2063.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	2.36853518168937	2.29689563320193	2.74348828703833	2.29063678182752	2.22457995136078	2.32805473533502	-1.2892431766977	0.141739266772225	1
Merged-chr4-127023221-2	chr4	127022721	127023721	+	824.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 2 of 9)	intron (NM_023603, intron 2 of 9)	1920.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	5.63788778476725	5.58361196261787	5.27930285799421	5.70313194476482	5.74278216405901	5.56542393396531	0.291287252034151	0.38137651435567	0.763085068523772
Merged-chr6-145307461-4	chr6	145306963	145307963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	56911.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.39750355854506	8.58628866581221	7.90400749383039	8.16064025297049	7.89915764076084	7.88539195927114	-0.4864603975353	0.0636530943563833	0.328767639677588
Merged-chr5-122502321-6	chr5	122501854	122502854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-129.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	7.69944089448184	7.27876916078592	7.20027741526736	7.29532848101871	6.93692065633759	7.07932111686154	-0.458211598960782	0.0924407153116059	0.404981153037862
Merged-chr3-89209350-2	chr3	89208850	89209850	+	568.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008094)	TTS (NM_008094)	4985.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	5.80051385290249	5.67836804293804	5.91902347859907	5.61323760953777	5.84398295559624	5.97971952117893	0.0365974263914078	0.9080912375468	0.979108668058273
Merged-chr10-58351892-4	chr10	58351407	58352407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359116)	promoter-TSS (NM_001359116)	-56.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.0829766848608	5.06682339368302	5.31495357218876	5.07721707023974	5.02732686990398	5.48893509442331	0.101450480607506	0.789542818780428	0.949244735006745
Merged-chr15-63650302-4	chr15	63649801	63650801	+	789.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158438.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	2.76978892723227	2.83424341699241	2.82966094449383	2.70222962879552	2.69909114097945	2.65303228765649	-0.667717445526074	0.360771650937401	1
Merged-chr15-81080601-4	chr15	81080034	81081034	+	870.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	24513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.93146488445329	4.71277098985082	4.63921237071029	4.52635160728563	4.37235435973752	4.44946699380572	-0.787555910926606	0.062357771545405	0.324521873896803
Merged-chr12-79646795-4	chr12	79646304	79647304	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	277929.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.54698258282112	5.39603178263029	4.99572599532732	5.07947417601983	4.93106085781143	4.86497016026042	-0.787463643722239	0.0417045142123374	0.255364575655322
Merged-chr3-108085424-4	chr3	108084922	108085922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	4.0	NM_001289720	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	5.53692473599687	5.42115805635228	5.72491460991002	5.55622528120635	5.82353674206503	5.54421286699155	0.187120423413124	0.574668319903146	0.870862343796639
Merged-chr5-31451481-4	chr5	31450980	31451980	+	988.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	-956.0	NM_172993	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	6.39196773050118	6.53354911417512	6.84712263983079	6.03150593843189	6.42767801848136	6.54621234273137	-0.39813432158697	0.195371549636547	0.583020169139918
Merged-chr5-105648932-3	chr5	105648415	105649415	+	907.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.21265518736551	4.20749092522841	4.26889264439599	4.16397418622084	3.99368966523734	4.15558729297211	-0.358109843704282	0.444968501327653	0.804645087548819
Merged-chr17-43538867-4	chr17	43538365	43539365	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	4774.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	4.12522098583685	3.75493664307314	4.65075343167248	3.72939211745634	3.81443680526849	4.05433668708439	-1.01881580882946	0.0787571960849269	0.37084959382934
Merged-chr11-113753264-2	chr11	113752768	113753768	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1453.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	2.0743621012827	2.24493611987179	2.33188893180736	2.47425316812356	2.2655418763401	2.4712261135133	1.26070553067776	0.1559952979199	1
Merged-chr9-16214198-2	chr9	16213698	16214698	+	744.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	MTA_Mm|LTR|ERVL-MaLR	164033.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.98389318364738	3.83905288550276	4.13320895678642	3.74316678655371	3.68460592083995	4.06826742747777	-0.473136321874592	0.373831245795151	0.757586650919968
Merged-chr1-51500393-4	chr1	51499899	51500899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22000.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	6.10625012606529	6.10231791881155	5.94966682733174	6.06753086337588	6.11828541645573	6.08043632487322	0.0502800135901131	0.860222032451765	0.967441103100897
Merged-chr3-116118138-2	chr3	116117638	116118638	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 5 of 8)	intron (NM_011693, intron 5 of 8)	11550.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.12467813640019	4.53084815099555	4.18642090324901	4.07922781881961	4.28103622014581	4.25503838141536	-0.245879972625431	0.610858786587348	0.885849400663435
Merged-chr8-105225164-4	chr8	105224670	105225670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145604)	promoter-TSS (NM_145604)	-18.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	6.01022121489781	6.19276861397227	6.46482031806123	6.33964763415391	6.37818939889113	6.57392582854695	0.337073413387133	0.250154480647435	0.647328689961491
Merged-chr13-13393598-4	chr13	13393088	13394088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	36.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	6.27831693378115	6.25533854982961	6.15371668686164	5.79985122892454	5.7722728472431	5.42352325417771	-0.948484639266586	0.00234694513449803	0.0348971784759314
Merged-chr9-123930970-6	chr9	123930405	123931405	+	946.227783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	37787.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.66831973574741	6.52450160676512	7.14386184447071	6.60016538678864	6.85180463641102	7.02197039041573	0.0560487003382684	0.852215167877412	0.96531854415899
Merged-chr11-21225197-4	chr11	21224688	21225688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13844.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.37284640447593	6.39483009007514	6.11152901143248	6.15892928213452	6.45421380609033	6.47193071923882	0.10040554093937	0.728037085883334	0.930388257624371
Merged-chr11-98438416-2	chr11	98437916	98438916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003817)	TTS (NM_001003817)	572.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	6.13531264475098	6.63881364642209	6.26401594655223	6.61608308854892	6.40894785685731	6.21882958496607	0.0956737421187401	0.756558273125836	0.939629132869937
Merged-chr13-94094463-3	chr13	94093937	94094937	+	670.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	36641.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.01145385391488	3.45220829599208	3.4730129254743	3.56548064676989	3.53412713419934	3.23548050266438	-0.772710980621187	0.23561581846469	0.631841167422156
Merged-chr11-72660553-4	chr11	72660046	72661046	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	PB1D9|SINE|Alu	-29456.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	4.15043191768896	4.2731030142272	4.04066123018684	4.12135494066805	3.91488052940325	4.10992595401051	-0.340053771850594	0.484369011972889	0.826803773606864
Merged-chr15-88751936-2	chr15	88751455	88752455	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_181412, intron 1 of 2)	CpG	244.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	7.92044025278001	7.64523047583703	7.32891273458647	7.78917758910548	7.15928677774631	7.2669847553916	-0.323100415464553	0.274578572604702	0.671921605426063
Merged-chr6-57534936-4	chr6	57534446	57535446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	480.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	6.60635816013311	6.77467506544932	6.69112779359	6.70711345480565	7.07244917711742	6.98397323069372	0.373094762402484	0.156020372148475	0.526210657279004
Merged-chr10-94417886-4	chr10	94417393	94418393	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-96964.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.17219388646825	3.36685179914333	3.45846755712665	3.43459934766064	3.29097567616719	3.18893550393365	-0.0901487132953867	0.885203212157217	0.973549591486895
Merged-chr19-46483788-4	chr19	46483270	46484270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17878.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.50924968181083	7.55612977361874	7.30111569256705	7.61397470260548	7.90432802427415	7.74921939561827	0.432700426915272	0.0655961765337819	0.334075569654972
Merged-chr11-101641084-2	chr11	101640584	101641584	+	781.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13135.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	6.41938604950821	6.1120633272016	5.73321778179635	6.3155136921279	6.42438011249195	6.05941747247617	0.252523424658121	0.446000507381722	0.805513451373278
Merged-chr14-62329737-3	chr14	62329238	62330238	+	794.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	3.60198413446617	3.59836504472286	3.77617043426195	4.23150753458114	3.99399548740955	3.6248739962147	1.03000985614483	0.0663937072892594	0.336551178563795
Merged-chr10-68137677-1	chr10	68137177	68138177	+	589.5	f0_balb.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	141049.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.05697742676471	4.90838628616883	4.95914853704583	4.68952891444227	4.83523001878918	4.87938501887335	-0.387525985066353	0.313477555775263	0.708068854469518
Merged-chr7-28598260-4	chr7	28597757	28598757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027470)	promoter-TSS (NM_027470)	-73.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	5.05443551279947	4.79820758393151	4.47450583694059	4.82979071194617	4.42992492137601	4.4978339157712	-0.487087851907299	0.28150562045025	0.67967073158435
Merged-chr19-53325837-4	chr19	53325371	53326371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-3542.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.02400152854381	6.0267899248217	5.6345861003529	5.7474081012565	5.18827041536066	5.45962969691936	-0.797460908029472	0.0252723244144122	0.188242732958053
Merged-chr1-34823556-4	chr1	34823073	34824073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	19477.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.70352627411373	6.60828074725441	6.61574966210732	6.64210649522137	6.69029532364908	6.67469636678987	0.0397948592204215	0.874732653340966	0.970761094991732
Merged-chr10-127617017-10	chr10	127616461	127617461	+	786.955017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	4187.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.24187781245655	6.3745226115131	6.81979073009261	6.61238922518726	6.50978278443937	6.4121194624539	0.0412162477730993	0.889980247896726	0.974360328989611
Merged-chr2-52524992-2	chr2	52524492	52525492	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	33619.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	2.79040304400524	3.02675237759491	2.92475964473025	2.96600470452614	2.50734652779026	2.93808385489257	-0.4797417758009	0.543111971208918	0.857486639982385
Merged-chr3-104864460-4	chr3	104863962	104864962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	43.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	8.48651503031909	8.71735031224342	8.56578679504805	8.4979020142925	8.60726715109287	8.59060577860149	-0.0395122817102796	0.846850493750924	0.964111312125802
Merged-chr1-165766671-4	chr1	165766178	165767178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2920.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	8.84218302011073	9.0218749376511	8.34814697858495	8.54501989014369	9.05205791333683	8.45801087247458	-0.0747252938003772	0.789908877739411	0.949311112850285
Merged-chr11-3184306-2	chr11	3183809	3184809	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	9154.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.12678495998545	6.43231401036992	6.44748221474487	5.84820756003831	5.23953011299039	7.0780798042919	-0.0259141231289233	0.97611108203268	0.994572735300192
Merged-chr2-163644150-2	chr2	163643650	163644650	+	909.7999880000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028113)	promoter-TSS (NR_028113)	-700.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	7.18901768626464	7.2316529937939	7.04989783248776	7.1895220805617	7.52192893273595	7.32806634567042	0.29060402548239	0.234811037965816	0.630945615851348
Merged-chr11-29373568-4	chr11	29373083	29374083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176841)	promoter-TSS (NM_176841)	-589.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	6.70863896495893	6.91729981779671	6.97036185543052	6.88010286191054	6.6382487030912	6.80275029395375	-0.144752994133089	0.576488248654286	0.871585692229598
Merged-chr12-3739699-2	chr12	3739199	3740199	+	885.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67281.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.31405689025525	7.70696901609375	7.17208460084625	7.91604099705685	8.1723449117914	7.5231063792778	0.692403500005975	0.0155784966217218	0.136275814434423
Merged-chr15-38374000-4	chr15	38373474	38374474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73263.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	6.14378919413099	6.07760084655569	6.03967604494911	5.90707196502136	6.01154545164558	5.63797792596935	-0.372237446367491	0.222786654983169	0.617727541274371
Merged-chr9-40638609-5	chr9	40638131	40639131	+	806.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47333.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.12104761539958	5.70977283214778	5.04971999543637	6.17555059683712	6.18163022971365	5.34734064534907	1.13489873629886	0.00820195415013598	0.0875857547387724
Merged-chr14-27376272-4	chr14	27375779	27376779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	14890.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	8.11648412921661	8.46381961140716	7.80415314119282	8.21650403430228	8.67705718031273	7.90378233065125	0.211609943827384	0.477174691811827	0.823186444058601
Merged-chr8-120741773-2	chr8	120741273	120742273	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	3134.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.80823741899848	5.94079468531846	6.26952592895923	6.01912770152877	5.84267754491527	5.85802010152129	-0.175304600418424	0.577930228550788	0.872239383750968
Merged-chr6-124505225-4	chr6	124504729	124505729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	L3|LINE|CR1	-7392.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	5.23692550237581	5.14112395093277	5.18037716754445	5.18754879687545	5.17464299949362	5.3686423320581	0.106522765907356	0.761658249520404	0.941258867861232
Merged-chr10-59322545-2	chr10	59322045	59323045	+	879.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-751.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.53338797811225	5.89652538308138	5.53549922504347	5.57928097497838	5.67550520317477	5.68231088401162	-0.0543897281132856	0.86945038728873	0.969788171765313
Merged-chr13-102684896-4	chr13	102684382	102685382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8665.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	6.62929179764117	6.40546129630381	6.42068878884417	6.50693122607021	6.647588515761	6.51685430472534	0.113409810569524	0.671669188974807	0.910573176861295
Merged-chr17-12993347-2	chr17	12992847	12993847	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	-808.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	5.64700713728866	5.98789379941252	6.04362726569274	6.13355453217865	5.81415533148495	5.68641254100962	-0.00595609755311051	0.985649607602854	0.99691465847822
Merged-chr11-49103467-3	chr11	49102964	49103964	+	865.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10293.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	3.12439846195735	2.95663372437029	3.02163737161559	3.22993092977512	2.87345610645731	3.0948041775459	0.15571982114923	0.819739505597972	0.957288083214325
Merged-chr11-117879688-2	chr11	117879188	117880188	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6162.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	6.08036423487271	6.06587813375729	6.38208287875653	5.82968585752907	5.78602725475914	5.49040322233907	-0.796064157258493	0.0126275861311238	0.118379489319461
Merged-chr10-78096261-4	chr10	78095772	78096772	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26904.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	4.33651120719339	4.37549000241966	4.2998838402417	4.6420934240158	4.50974558454852	4.74011934564448	0.718407180748385	0.0955401006790169	0.412029682662985
Merged-chr7-109523839-2	chr7	109523339	109524339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037617)	TTS (NR_037617)	3707.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	2.76164868156853	2.99752493490066	2.88273610836565	3.04143565532853	2.97995709648533	3.07591133372553	0.685068360437951	0.322528196915927	0.715978413663286
Merged-chr5-105694322-6	chr5	105693864	105694864	+	992.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5605.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.99671062340296	5.69962406428193	5.3768737383378	5.62176079336401	5.13116591063275	5.2761961739849	-0.711027238621004	0.0619673118240834	0.323230697232844
Merged-chr2-129315997-4	chr2	129315497	129316497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6025.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	5.09519721952319	4.87730207027112	4.79420509184112	4.88155833617934	4.97455267887222	4.51425041893153	-0.255057594915648	0.540919212649276	0.856582937501506
Merged-chr6-32480409-2	chr6	32479909	32480909	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-30732.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	7.00637889603827	6.9906827478534	6.80785227802946	6.53952300492864	6.91754491152852	6.47396199137091	-0.418195511815776	0.131088632706349	0.483837071958386
Merged-chr2-14228697-4	chr2	14228193	14229193	+	935.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-721.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.83136461676563	6.77400829579662	6.72913526762036	6.5892621306586	6.59060750083868	6.93242248001154	-0.12035488175504	0.648279003825067	0.901726822360623
Merged-chr14-54365467-3	chr14	54364972	54365972	+	856.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026936, intron 3 of 9)	intron (NM_026936, intron 3 of 9)	4631.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	3.9872425065175	4.12874731863078	4.18122351061624	4.36034620920113	4.00892048338187	4.75663137866291	0.809859337327424	0.116013624784906	0.454849064274723
Merged-chr1-86229591-4	chr1	86229113	86230113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-73608.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	7.36790777224449	7.32055660439095	7.12082911373304	6.57803037218943	6.75175897370205	7.01156480289092	-0.751957238654071	0.00386759602471625	0.0506555847669747
Merged-chr1-132212309-2	chr1	132211809	132212809	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033250, intron 1 of 3)	intron (NM_001033250, intron 1 of 3)	-14005.0	NM_001311103	213409.0	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	2.05274658295325	1.883430416499	2.13823576726971	1.7549490725623	1.71722444623498	1.73733680707703	-3.01599030566136	0.0116341899289314	1
Merged-chr2-170155111-4	chr2	170154589	170155589	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12414.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.91187617123925	6.83324970773548	6.8328368810391	7.03109409334215	7.22087528378885	7.24352565721573	0.467322535351311	0.0540980073996554	0.298500464171786
Merged-chr16-91739235-4	chr16	91738720	91739720	+	851.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	B4A|SINE|B4	9849.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.63231709580896	5.75492098356552	5.67447200964121	5.6928070640598	5.59444455417891	5.88556169858244	0.0546706334097503	0.862984211150114	0.968149570765519
Merged-chr1-162566704-1	chr1	162566204	162567204	+	686.0	f1_balb.idr	Intergenic	LTR80B|LTR|ERVL	-3811.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	2.99805965241817	2.92072487645187	3.33695057032602	2.84049857864234	3.06720942894569	3.08833305702147	-0.402391622591319	0.568264633003509	0.868531823304055
Merged-chr2-165992615-4	chr2	165992087	165993087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	-50.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.15107151526714	6.79159597426974	7.06836111624319	7.27659107035609	6.90179497017693	6.90829631875556	0.0493277403267914	0.855752477929301	0.966258544020232
Merged-chr8-70540481-4	chr8	70540010	70541010	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	835.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	7.39967262704195	7.41596740130296	6.8412290552924	7.06876163585672	6.99165512702427	6.73672497455731	-0.467927179008626	0.0981351754007752	0.417592737722191
Merged-chr16-97543395-1	chr16	97542895	97543895	+	619.0	f0_balb.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	7312.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	3.30800391242808	3.22143575046567	3.36011838238384	3.23407453360945	2.99251557898414	3.43058204184548	-0.298092643987605	0.645920840236926	0.900777348480444
Merged-chr6-113237731-4	chr6	113237235	113238235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026849)	promoter-TSS (NM_026849)	-108.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	6.72336733024892	6.73558658498229	6.7989486943138	6.87466552785921	6.82250388597321	6.87198851860383	0.162856946699699	0.506335683644519	0.838398065046031
Merged-chr7-121707474-4	chr7	121706970	121707970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033173)	promoter-TSS (NM_001033173)	-217.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	5.31095711288495	4.85040387059735	5.31336595353687	5.3222352955946	4.50519237222367	4.79186728804552	-0.5307290832344	0.247028114900858	0.644045601901006
Merged-chr1-171287977-4	chr1	171287488	171288488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013919)	promoter-TSS (NM_013919)	-27.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	5.72381456218219	5.78556028371684	5.98278716794575	5.64546124446738	5.50926683206261	5.88639169866235	-0.274364835556924	0.396882126232694	0.773812221163503
Merged-chr4-129913952-2	chr4	129913470	129914470	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7744.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	4.24191351992341	4.53494907166208	4.47994783055981	4.45328437266215	4.45052274829571	4.7399021930747	0.305927529372157	0.491368764993007	0.830489167344521
Merged-chr17-25862739-2	chr17	25862239	25863239	+	762.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026633)	TTS (NM_026633)	-1224.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	4.69901767310342	4.77519630447751	4.55499441806401	4.53365143101398	4.731170787464	4.70411336746181	-0.060679948061696	0.882766260365283	0.973275268253702
Merged-chr2-11187371-4	chr2	11186887	11187887	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	15005.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.3854865970691	4.48223265773953	4.93768039243058	5.04761133492532	4.89727865845322	5.00205971016455	0.851639790185244	0.0447828122851506	0.266811416627725
Merged-chr8-84832376-5	chr8	84831971	84832971	+	970.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033145)	promoter-TSS (NR_033145)	189.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	6.46134664627905	6.44290933711911	6.63741273727072	6.8643452452549	6.61381453745052	6.50765912783053	0.261277248791153	0.335882285447189	0.725999927459727
Merged-chr19-3378382-1	chr19	3377882	3378882	+	798.0	f0_c57.idr	exon (NM_013495, exon 15 of 19)	exon (NM_013495, exon 15 of 19)	-10475.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	6.75772405953242	6.66649037038897	7.28138999405192	7.19226235733462	7.29155670836113	7.19235272162044	0.467091116917384	0.0944993042088523	0.409774560300836
Merged-chr2-128797658-2	chr2	128797158	128798158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-20645.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.36698690283694	4.61426065208112	4.71030449984562	4.36278872706784	4.43409594715933	4.73854180066752	-0.131610430789882	0.766977374801657	0.942573703853445
Merged-chr8-34108125-1	chr8	34107625	34108625	+	1000.0	f1_balb.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	-311.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	6.06601111844334	6.13433304399462	6.02467586956835	6.13423210153531	6.28222051860424	6.15242255988025	0.198557805891449	0.48243275222564	0.82559879164146
Merged-chr5-76706011-3	chr5	76705540	76706540	+	735.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114326.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	5.37112754760012	5.37569705611066	5.39717950044093	5.64530183590809	5.64923111041581	5.54888563474309	0.456756586401425	0.157147393073443	0.528106635010299
Merged-chr8-84661265-3	chr8	84660749	84661749	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010499)	TTS (NM_010499)	1603.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	7.16732348262996	6.86150293299358	6.64130225918845	7.09791929150741	6.93007133852872	6.92222484008807	0.104102776040367	0.702067320356393	0.921734218784473
Merged-chr10-116949891-4	chr10	116949402	116950402	+	706.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	551.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	3.86773692262018	3.35357642568303	3.91506162798851	3.72309156802299	3.31978267280865	3.79403613129639	-0.362742684833938	0.563708882010731	0.865992481769395
Merged-chr7-64391628-2	chr7	64391128	64392128	+	924.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355124)	promoter-TSS (NM_001355124)	608.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	6.72547862933664	7.30767327818051	6.7363883106252	6.89327058578125	7.23912303292297	7.14813839351854	0.212909613798165	0.471188345067873	0.819888573544447
Merged-chr17-35879751-4	chr17	35879260	35880260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026987)	promoter-TSS (NM_026987)	-18.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	5.34085817837477	5.21570618334972	5.8105026324855	5.3452793063179	5.39636275429198	5.31491866087347	-0.217825461203456	0.554377388487603	0.862781889858346
Merged-chr2-35433645-4	chr2	35433165	35434165	+	884.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	27784.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.94586976230064	5.20068566232523	5.26710558710551	4.85074322622104	4.52405986766833	4.82911180064171	-0.898279754291511	0.0249859296997221	0.18689583229544
Merged-chr6-38945179-3	chr6	38944692	38945692	+	622.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	26206.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.33620858103821	3.54371008491096	3.82830149618034	3.40350491831298	3.63676278220273	3.89603384623755	0.26638585101919	0.662374100996999	0.906777186880082
Merged-chr15-35373318-2	chr15	35372818	35373818	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 2 of 61)	(TCC)n|Simple_repeat|Simple_repeat	1772.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	3.38745856886949	3.21640200284867	3.44597231126292	3.35766806339989	3.23083169515246	3.56775661767554	0.136826538901657	0.823826907114706	0.958451755471188
Merged-chr12-111678603-2	chr12	111678103	111679103	+	755.833313	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001099792, exon 2 of 4)	5' UTR (NM_001099792, exon 2 of 4)	498.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	5.6141934841549	5.94702045086652	5.84555062526903	5.91407912229962	5.70878503684931	5.46318131763274	-0.169005328328438	0.612648758762987	0.886885261037085
Merged-chr4-129817872-6	chr4	129817425	129818425	+	740.1611330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.36222300999343	6.30468157018239	6.647338899416	6.24871129015379	6.38736571700533	6.34496750141026	-0.174862081062835	0.533178181901107	0.852232940039328
Merged-chr12-44209280-1	chr12	44208780	44209780	+	1000.0	f0_balb.idr	intron (NM_013760, intron 1 of 2)	intron (NM_013760, intron 1 of 2)	788.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	7.66673766883348	7.98852406134288	7.40894328995163	7.55705834067477	7.56481837715326	7.35297778157309	-0.318680179763794	0.218210741122644	0.612414823722149
Merged-chr9-32695009-2	chr9	32694509	32695509	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.09644427721714	5.04629428027272	4.55237793688463	4.34269372347696	4.82948773746626	4.53084976827919	-0.765134268141524	0.0963065410361178	0.413705455164341
Merged-chr18-38298177-4	chr18	38297664	38298664	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361267, intron 2 of 9)	intron (NM_001361267, intron 2 of 9)	1359.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	5.94629301111629	6.17580633795854	5.6866380018368	6.04666550487118	6.10526400035072	5.77785963738475	0.0510116114234238	0.874614313928549	0.970754540400126
Merged-chr17-57194071-4	chr17	57193543	57194543	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019418, exon 1 of 4)	exon (NM_019418, exon 1 of 4)	138.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	2.55175356372763	2.41691582861679	2.56723861761106	2.39773519777583	2.31428773741361	2.38524157601568	-0.9422605410014	0.249463349077548	1
Merged-chr2-84620660-3	chr2	84620162	84621162	+	797.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 4 of 18)	intron (NM_001355064, intron 4 of 18)	28818.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.19413074601559	4.71323243704686	5.62690778177531	5.04822402859372	5.17454018007196	5.53941501165313	0.0841290447453695	0.848352904717871	0.964356989789491
Merged-chr17-87105984-3	chr17	87105466	87106466	+	842.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1713.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	5.36554685883077	5.65770370130633	5.84932340594171	5.5807798141346	5.62646555420341	5.60906632995121	-0.0434490734898429	0.897164601971702	0.975955240159241
Merged-chr15-59089933-4	chr15	59089425	59090425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-7899.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.25912554009724	3.88151972543958	4.2918765128304	4.00921245664028	4.05240153713648	3.99585386524921	-0.378991199979166	0.45175435446493	0.809245753174589
Merged-chr10-95679006-4	chr10	95678522	95679522	+	943.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-114876.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	5.46892067509489	5.29428742438532	5.43697132004733	5.01586071513181	5.09710604673699	5.1598127083741	-0.629227759893101	0.0726466166455623	0.354034185184722
Merged-chr6-124271275-4	chr6	124270778	124271778	+	899.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33373.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	5.19956771819867	5.13234460035056	5.23468875412834	5.11145433748415	5.14383125442564	5.35877098477707	0.0297359516491648	0.933225411834155	0.985356091252617
Merged-chr4-145219387-2	chr4	145218887	145219887	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-24382.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.53135675147843	4.38192968845553	4.51357424739775	4.73782338361823	4.50065551271898	4.95175849187188	0.617579869318186	0.153978997070253	0.52312119827787
Merged-chr11-3161399-3	chr11	3160865	3161865	+	929.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	32098.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.51343333085144	6.88539300076003	6.79107485366343	4.95961237738854	4.4692068661378	7.39394419103339	-0.574243613830202	1	1
Merged-chr14-66274994-2	chr14	66274494	66275494	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	6058.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.57966444265952	2.60473928132593	2.54553027706184	2.60782119897253	2.65888887421506	2.8055397018717	0.623562006698162	0.410348989442285	1
Merged-chr6-136554977-4	chr6	136554463	136555463	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36112.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.52466696664598	6.54280093056856	6.25998542933885	6.21219561551393	6.73194361713402	5.67905032120528	-0.251848152490199	0.496902082884284	0.833355041868306
Merged-chr9-122349333-4	chr9	122348829	122349829	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	2.73161421360438	2.62323405384381	2.75101028884331	2.51649596204111	2.2952806923024	2.5770777659517	-1.46666948756293	0.0780389670654274	1
Merged-chr2-145742451-2	chr2	145741951	145742951	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	41256.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.14358492160201	3.21735697302295	3.46719138863288	3.3676682991473	3.34109396655889	3.43169090355098	0.409799432183783	0.505353186389097	0.838055364884185
Merged-chr11-115079399-3	chr11	115078956	115079956	+	917.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11975.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	3.65665531271902	3.6325762115012	3.64838928396131	3.7829772734395	3.41723071360145	3.25158651574039	-0.487280752900595	0.426175037825458	0.793687695503049
Merged-chr1-86358982-5	chr1	86358455	86359455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	500.0	NM_010880	17975.0	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	8.26516076594607	8.47526505862001	8.07684251760471	7.98788533671278	8.15454529443855	8.02300087034709	-0.322040027787613	0.15469903226369	0.52390421792532
Merged-chr10-96502214-4	chr10	96501721	96502721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-114780.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.56770530839466	5.33482541471484	5.60074280992324	5.23742222484757	5.11185275715482	5.28968380723644	-0.579567167681126	0.0946510143877416	0.410136490273995
Merged-chr5-122639704-3	chr5	122639216	122640216	+	759.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	3.26647242505867	3.1539222715746	3.09601418199057	2.80576460077287	2.80787177086428	2.86215614040905	-1.74254257061094	0.0142196152579413	0.128083720269613
Merged-chr1-36572930-4	chr1	36572406	36573406	+	843.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-14525.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	6.95970119798841	6.84332704654304	7.44311388920252	7.3480053910467	7.57378245320205	7.43002139183616	0.532660248601629	0.0511945105216418	0.288427979652297
Merged-chr4-134497573-1	chr4	134497073	134498073	+	785.0	f1_balb.idr	intron (NM_001285849, intron 1 of 2)	intron (NM_001285849, intron 1 of 2)	532.0	NM_001285849	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	5.79308391003594	5.53389068098202	5.87391655656623	5.54632366111001	5.67889344134921	5.29179757018082	-0.38275998380713	0.264002097378284	0.661879105198449
Merged-chr18-53904892-1	chr18	53904392	53905392	+	693.0	f1_balb.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	42779.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	4.40429514562879	4.4657295038146	4.65424471725773	4.40417920805803	4.33777987832138	4.44004475935375	-0.289998439322781	0.504805672330046	0.837836810464043
Merged-chr6-17586953-3	chr6	17586485	17587485	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50025.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.12942716343672	3.01227517313878	3.29553202524077	3.69808327226833	3.97615995701105	3.75699287897942	2.76178210653939	2.64434841648942e-05	0.000925666567266518
Merged-chr2-33429523-4	chr2	33428987	33429987	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1837.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	5.49692528869753	6.0446113460194	6.08604257092569	5.91676601744088	5.64979145517458	6.12570880925012	0.00699205109940931	0.984222987485947	0.996528768947178
Merged-chr2-101796555-4	chr2	101796134	101797134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	CpG	1073.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	7.18404108800045	7.25385012670921	7.1793903957085	7.53720794137708	7.82835904670391	7.18647685216454	0.514024884366542	0.052682347491185	0.293747421433125
Merged-chr17-15065795-4	chr17	15065301	15066301	+	826.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12742.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	3.12789631537989	2.98795413226789	2.82818925111959	3.1585400102624	2.90194818457354	3.31882464943064	0.626840826406287	0.378823618251105	0.761325784964053
Merged-chr10-59223311-2	chr10	59222811	59223811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172939, exon 1 of 1)	exon (NM_172939, exon 1 of 1)	1389.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.81683745142552	6.80177427486621	7.04906846431243	7.41321751034935	7.41349909375045	7.34407549557025	0.763727542989916	0.00137614848893754	0.0231466673675995
Merged-chr10-76352110-4	chr10	76351610	76352610	+	971.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008787, intron 41 of 41)	ORR1E|LTR|ERVL-MaLR	-6819.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	4.36254174229289	4.60133321794608	4.93057453573907	4.61717191063243	4.30453789709362	5.17572885849801	0.222992905349723	0.656119248245136	0.904563844889502
Merged-chr6-47455523-4	chr6	47454991	47455991	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355550, intron 1 of 21)	intron (NM_001355550, intron 1 of 21)	734.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	7.21388907755628	7.57544149149504	7.41502589836594	7.29750396052081	7.25025919289498	7.40942761208827	-0.13969109356626	0.564905987291537	0.866552670637515
Merged-chr16-77041748-4	chr16	77041249	77042249	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	27680.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	3.09140449825896	3.06481056466303	3.07702558716325	2.94076307269772	3.06927247345252	3.03062100213002	-0.278680093800275	0.672835693847502	0.910966428144718
Merged-chr2-167419378-4	chr2	167418876	167419876	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2334.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	2.40199629651248	2.52017866819105	2.32574621889567	2.4610114215614	2.44164362924951	2.59360180291592	0.461639276007311	0.571159398591061	1
Merged-chr5-139357256-2	chr5	139356756	139357756	+	735.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001160265)	TTS (NM_001160265)	4639.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	2.13676615056455	2.03056786944524	2.33549023027349	2.10514969738779	1.81758267247497	2.15322646325401	-1.0523145044712	0.303092808314715	1
Merged-chr10-19934749-6	chr10	19934293	19935293	+	839.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008580, exon 1 of 30)	exon (NM_008580, exon 1 of 30)	267.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.57830922659318	6.4881288750171	6.34010970876985	6.03573551714664	5.74083076432661	6.26383842127569	-0.773101742993751	0.0109120067310088	0.106844699467378
Merged-chr12-80109850-3	chr12	80109374	80110374	+	858.714294	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	3139.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.69650862136175	3.84998962476124	4.31483274267886	4.13219673415196	3.86254468090225	4.1565520043471	-0.777240583359372	0.158289489299675	0.530002962906299
Merged-chr11-78209904-2	chr11	78209404	78210404	+	802.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 32 of 36)	MTC|LTR|ERVL-MaLR	16512.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	4.67255698126318	4.5024386084695	4.62968028393329	5.10357432966957	4.82170932951872	4.99855671801352	0.85266318923823	0.0336984511765817	0.224408221328612
Merged-chr11-77444997-4	chr11	77444363	77445363	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-19050.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	5.33171151638413	5.32080331534597	5.02269820617809	5.1582508246129	5.0128778105026	4.85796450068927	-0.463765481269521	0.217033162904319	0.610703221688078
Merged-chr2-136948137-4	chr2	136947622	136948622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	48771.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	4.00956946327009	4.39786696578117	4.03691177577751	3.91019604294492	4.02581685648113	4.19982560389073	-0.348102539983411	0.491519826281016	0.830572128647886
Merged-chr13-24613184-3	chr13	24612669	24613669	+	629.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-1437.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.18046353172317	3.06965014951856	3.02683443038559	2.79488351114197	2.85249930986108	2.9797370993293	-1.06631116100853	0.124028687053903	0.471278757298044
Merged-chr17-56133957-4	chr17	56133460	56134460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-108.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	7.23563107729939	7.36535843185687	7.45751412342445	7.55725910155151	7.65582132426762	7.28470602078998	0.243264497321337	0.315788958463469	0.710051549906187
Merged-chr2-22795214-2	chr2	22794735	22795735	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	20908.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.17966910801613	6.11597437733937	5.91920698176039	6.26343188979709	6.59112698652069	5.93013490812573	0.374466545805048	0.245916886714572	0.642981784494284
Merged-chr19-11098560-4	chr19	11098053	11099053	+	780.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 6 of 6)	intron (NM_027058, intron 6 of 6)	-17450.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	4.42216002503112	4.53737696881073	4.41559124746332	4.4741199880426	4.68636386781914	4.56866390919481	0.299809590605349	0.48138262953783	0.825057383179199
Merged-chr7-24112601-1	chr7	24112101	24113101	+	760.0	f0_balb.idr	intron (NM_021307, intron 1 of 4)	intron (NM_021307, intron 1 of 4)	281.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	3.04639912880276	2.96354711904806	2.99679999166727	3.11333761912619	2.61109472765207	2.94885564726106	-0.449932584404938	0.548884266152053	0.860071455679488
Merged-chr4-75259558-3	chr4	75259069	75260069	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18723.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	2.87523103842783	2.96813173315477	3.05746096683361	2.80838727647659	2.62608917641564	2.95709360724602	-0.852970797759687	0.242404510599756	0.639506411823239
Merged-chr14-21501216-4	chr14	21500698	21501698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	CpG	1413.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	7.88211928768345	7.77977439592174	7.64235228487138	7.87939268233837	7.7229045460564	7.43374403123164	-0.111433128578639	0.644159828980491	0.900067122451665
Merged-chr6-120112067-1	chr6	120111567	120112567	+	944.0	f0_c57.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18687.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.75311341729001	6.39766548983846	6.34267821344892	6.51730531154899	6.72431982487854	6.38290513656428	0.064680627487695	0.82403268714354	0.958461473318254
Merged-chr2-31061035-4	chr2	31060536	31061536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35464.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.78582080537742	6.85236371475873	6.74841499472725	6.38167866031186	6.49014979328753	6.10662846921697	-0.71529116776597	0.00920924556716058	0.0950723207384984
Merged-chr15-9111089-4	chr15	9110552	9111552	+	896.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285980)	TTS (NM_001285980)	29402.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	3.08592069283671	2.83196820003501	3.03732718508402	2.97706474395073	2.69236327958539	2.93178512131143	-0.577954511405797	0.42193231862669	0.790848655605379
Merged-chr8-70904704-4	chr8	70904198	70905198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	5.20906454779974	5.10225968249253	5.74153565905583	5.480626110554	5.48901627195118	5.63026585376826	0.318994308177198	0.391798533860536	0.77074421294513
Merged-chr14-76110845-4	chr14	76110364	76111364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	-27.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	8.64098564196248	9.12219190557305	8.42968214133398	8.59984474279014	8.81036446401725	8.49639978896809	-0.173583220139295	0.504699569501189	0.837806481766929
Merged-chr11-55449443-3	chr11	55448986	55449986	+	941.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11722.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	4.79693392885939	4.74525223238964	5.31844615033777	4.51633883693416	4.52878140671192	4.58463109965784	-0.982211283077389	0.0241090764060342	0.182602223702284
Merged-chr11-86753521-2	chr11	86753021	86754021	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B3|SINE|B2	4046.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	6.03819500489723	6.10540786716	6.04967199701705	5.88957580230968	6.33425379777668	5.8172257611125	-0.0228621933205266	0.942772466497704	0.987202156853573
Merged-chr3-21951137-2	chr3	21950637	21951637	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125515.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.50753018922823	2.46651152988743	2.25723691529429	2.46508673520447	2.36313796620606	2.7130318042462	0.615794919838174	0.475607750436098	1
Merged-chr19-9957989-2	chr19	9957489	9958489	+	730.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	-22611.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	2.37774828637977	2.53731936534418	2.53956081564006	2.47651486976445	2.31039771653814	2.61314821936776	-0.113414581845974	0.889431302106576	1
Merged-chr11-8688454-2	chr11	8687954	8688954	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23919.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.89057762715118	3.99731863895457	3.75013309581776	3.81039170109285	3.93223801770225	3.65440627095647	-0.240275946988877	0.653410244160472	0.903363954408982
Merged-chr13-40860084-3	chr13	40859578	40860578	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023887, exon 1 of 3)	5' UTR (NM_023887, exon 1 of 3)	310.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.58892779130439	4.44094522625729	4.6150415979554	4.66648513088845	4.3328710057938	4.75670712149745	0.096938440129862	0.824948389310066	0.95862923400744
Merged-chr15-98389971-4	chr15	98389481	98390481	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8464.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	3.35252491459243	3.33553635097944	3.47373794553527	3.15266684941561	2.83127500214929	3.09723907095308	-1.58486349616444	0.0204820089197908	0.163966422762936
Merged-chr16-55848045-4	chr16	55847558	55848558	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 5 of 5)	intron (NM_001134457, intron 5 of 5)	-9417.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.30330296424273	5.04496389388939	4.7510599813941	4.78851132246008	4.8368532293494	4.77735991060442	-0.570787691460407	0.157946552612622	0.529487802658679
Merged-chr1-64223357-3	chr1	64222863	64223863	+	604.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101974.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.60614557358421	4.45867756149532	4.83822948998038	4.51221805944478	4.40509721977877	4.96547024239717	0.0070960253471588	0.987565823231884	0.997223245230291
Merged-chr12-35030151-1	chr12	35029651	35030651	+	593.0	f0_balb.idr	Intergenic	MER63C|DNA|hAT-Blackjack	-17038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.42443040986903	4.31271949871803	4.23510368389711	3.75851356375315	3.72749693203333	3.86524116329538	-1.66649458485093	0.000923489740499998	0.0169217648816393
Merged-chr15-64242678-4	chr15	64242186	64243186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	69987.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	7.18133894461427	6.97886273239865	7.06152249969165	7.20260103682166	7.23121777488363	7.16998921631079	0.189891194923885	0.422385343812532	0.791198750319741
Merged-chr18-80684500-2	chr18	80683999	80684999	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	23674.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	2.99351844564605	3.03095972773613	3.06944853884705	3.06323292487943	2.91685205145728	3.14124287294168	0.0353104597139586	0.957610153312119	0.98996830630481
Merged-chr17-28756596-4	chr17	28756098	28757098	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12719.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	5.48609743305935	5.26884190153073	4.87112179808516	4.97583885727803	4.96330129586601	5.15845926795792	-0.448631189134876	0.253489903634188	0.650896916687683
Merged-chr1-95593034-2	chr1	95592534	95593534	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	74560.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.03166088096032	2.86282256724608	3.06389796083505	2.66191957176645	2.69137863804593	3.0226103242698	-0.956889999708746	0.196768215128739	0.584746042932789
Merged-chr13-94261918-2	chr13	94261418	94262418	+	713.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	B1_Mus2|SINE|Alu	23363.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	4.44657243874264	4.24973996570637	4.20757404155677	4.15735027168926	4.09258064404245	4.08353054483652	-0.548250031753533	0.241712022671604	0.638803036215977
Merged-chr7-35595048-3	chr7	35594551	35595551	+	750.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152519, intron 2 of 28)	intron (NR_152519, intron 2 of 28)	8804.0	NR_152519	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	2.89465206408803	2.78195220542147	2.94266753263985	2.48405773795817	2.28335447923915	2.65460047515209	-2.57515857500744	0.00530989957452686	0.0637908809942198
Merged-chr10-121501416-2	chr10	121500916	121501916	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-25166.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.74275883137959	3.60082287085534	3.76506459525511	3.44055732076086	3.58618738546723	3.78479324734012	-0.33111253713835	0.555087360867173	0.863144196950828
Merged-chr15-59198020-2	chr15	59197520	59198520	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108928.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.14130787113826	3.17958116832563	3.2566179727656	2.79607933772693	2.60314487989072	2.9879010346165	-2.03676349329462	0.00787223019100251	0.0850691597055762
Merged-chr4-142082517-2	chr4	142082017	142083017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1781.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	7.71759793872571	7.88281004181126	7.64955910158229	7.97875557014118	8.17656102117253	7.57845395892704	0.268182392075577	0.292647387028283	0.689877433771975
Merged-chr11-44529474-4	chr11	44528908	44529908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	10031.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.94330984534995	5.66906718015454	5.99807554454483	6.35400492246985	6.01214935800958	6.16749391714867	0.537570393482619	0.0824225555771882	0.379666088554908
Merged-chr10-111074093-4	chr10	111073612	111074612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64046.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	3.43380475863379	3.42390721729517	3.59777632084065	3.23438950823609	3.39291599663176	3.51298036478673	-0.382444895095862	0.521528828649884	0.84708604060785
Merged-chr8-91051246-4	chr8	91050777	91051777	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18780.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	4.80186467212179	4.78814133838709	5.06067725754786	4.82573180893657	4.74074851877256	5.12400600953484	0.0329447587026264	0.934572659142875	0.985727536128156
Merged-chr2-79050841-3	chr2	79050338	79051338	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181160.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.22134416621384	4.29129490157714	4.16799115125436	4.13084223662563	4.20134031463676	4.28169467968699	-0.0778246794860271	0.865792892010877	0.968641478520565
Merged-chr7-43643319-4	chr7	43642818	43643818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	8579.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	7.92341124205946	7.72338931956274	7.56367236191073	8.0488534326352	8.2287048348183	7.88354424021787	0.45060849605216	0.0581112567006379	0.31143381730946
Merged-chr11-100624954-2	chr11	100624454	100625454	+	632.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028024, exon 3 of 4)	exon (NM_028024, exon 3 of 4)	1999.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	6.0440625014766	6.23747037313147	6.46983167477164	7.63950871632887	7.67143000645628	7.00034824690956	1.89504644667671	2.61827580421578e-10	3.16659146972655e-08
Merged-chr15-55552299-3	chr15	55551809	55552809	+	900.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	5003.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	3.33675454628351	3.44962414932014	3.38355018193472	3.57307496339376	3.56629020151418	3.72129513167392	0.828728589340496	0.150106532117025	0.51688627325901
Merged-chr6-87804929-4	chr6	87804426	87805426	+	822.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4831.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	6.24222045426585	6.35685153783172	6.2097764315063	6.23653436682578	6.63746955888245	6.42796897661401	0.290465526285166	0.309907452733208	0.705462734304293
Merged-chr9-44397625-2	chr9	44397125	44398125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008063)	promoter-TSS (NM_008063)	530.0	NM_001293630	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	6.42693756350826	6.52426124517464	6.23421228402513	6.22069091988709	6.10931404004795	6.35394701485945	-0.308515224988012	0.274828117337968	0.672203259945391
Merged-chr6-136941358-4	chr6	136940871	136941871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	132.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	6.40491493621898	6.47059185133023	6.75372275886996	7.10438610583946	6.93569194420419	6.68587431667237	0.601117001341302	0.0294833361062844	0.206557002204535
Merged-chr15-100133690-3	chr15	100133191	100134191	+	950.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 3 of 37)	intron (NM_001159361, intron 3 of 37)	-20705.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.25221838929088	5.34300206711394	4.59587572865266	4.736826814504	5.1382835524393	5.10596669488187	-0.225615407756704	0.609777841518891	0.885315715493415
Merged-chr12-52002967-2	chr12	52002467	52003467	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	3540.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	5.6621425007117	5.65041501860575	5.58035753821197	6.258365403943	6.40730171551687	5.99061811431946	1.0610578165298	0.000562297611718162	0.0115183800285192
Merged-chr11-101462408-2	chr11	101461954	101462954	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012037, exon 3 of 6)	exon (NM_012037, exon 3 of 6)	3745.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	3.69354385217353	3.67327566962873	4.01617005525561	3.63161335172255	3.58939068793694	3.53962268541663	-0.697965532646091	0.212418776812845	0.604933314430941
Merged-chr4-86902624-4	chr4	86902112	86903112	+	979.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	28198.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.43232465862782	5.47558536218425	5.6804603061315	5.56834461338075	5.48336457884407	5.43761568935096	-0.0491646751709657	0.881296475619346	0.972635980891511
Merged-chr13-73774155-3	chr13	73773636	73774636	+	833.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	10439.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	3.21948370733256	3.20093902406428	3.66241566248216	3.48953103621718	3.33992413105342	3.4246596025584	0.186272185022084	0.766827849229748	0.942573703853445
Merged-chr2-122780612-4	chr2	122780108	122781108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-1391.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	5.52869347328324	5.74975073507668	5.85129370963713	5.7511252168192	5.77091004397631	5.91228426860862	0.178780261320102	0.571219324857604	0.869428183241799
Merged-chr2-167689051-4	chr2	167688513	167689513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	98.0	NM_001287738	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	8.00371183201926	6.97264404386734	7.38763878751477	7.43111280868225	6.57522779949252	7.1192587019331	-0.651315853557097	0.0736525495510431	0.356680324935584
Merged-chr2-124708317-9	chr2	124707811	124708811	+	926.037048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54730.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.45238452151418	6.41476952939331	6.64472404861277	6.73090279911203	6.64459754963165	6.75023417113026	0.328854339198267	0.206628766993318	0.597233793385439
Merged-chr9-50603915-4	chr9	50603420	50604420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	19.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	8.11089239136778	8.27638517082577	7.93763844921587	7.95722752818868	7.97155104360399	8.01650901048836	-0.198992266110868	0.364934627635105	0.750153919223841
Merged-chr5-145115437-2	chr5	145114937	145115937	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	1181.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	7.2146315828793	7.36999643451351	7.32524584383978	7.48615697430311	7.74236694835686	7.50969578368303	0.419893709570884	0.0727527779516957	0.354364757232611
Merged-chr16-17703596-2	chr16	17703096	17704096	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19304.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	5.38212947852806	5.42885753587123	5.1912962407854	5.33097570038628	5.24451058596131	5.1875591612033	-0.177109057361175	0.60980843763492	0.885315715493415
Merged-chr2-173660613-1	chr2	173660113	173661113	+	579.0	f0_balb.idr	intron (NM_024436, intron 1 of 6)	intron (NM_024436, intron 1 of 6)	768.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	5.88328296655234	6.23436997206025	6.21503974084121	6.16742288156493	5.92526851596175	6.08712475960748	-0.100095949222865	0.741896071095096	0.935037866415311
Merged-chr2-164074667-1	chr2	164074167	164075167	+	573.0	f0_balb.idr	intron (NM_021420, intron 1 of 10)	MIR|SINE|MIR	489.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	6.43862906263017	6.55279584445601	6.756372659851	6.72106230375906	6.82743407494809	6.64154220120814	0.248546295626314	0.347720168086217	0.735721282615637
Merged-chr9-61371380-4	chr9	61370870	61371870	+	993.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-996.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	7.43182729976269	7.68882607156136	7.74855545110039	7.54413959227599	7.84260941662368	7.48876919811524	0.0225378810118594	0.927078346760862	0.983578869536024
Merged-chr4-145241088-4	chr4	145240550	145241550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	5820.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	8.38255027297295	8.01385723605983	8.1463820345478	8.34668554487378	8.36478444132491	8.28647274027621	0.199759931751026	0.365203084174332	0.750391410706862
Merged-chr10-21669046-4	chr10	21668517	21669517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21828.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	4.75980902239759	4.99153285197172	4.8292190771529	4.70399938082637	5.13163174094126	5.0729454002534	0.260966254811544	0.516160819854814	0.844051513295388
Merged-chr4-101355574-3	chr4	101355079	101356079	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	669.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	7.93641694057345	8.09946141426904	7.64034569571742	7.83332476513982	7.99814466317207	7.8229881179321	-0.0331621100309928	0.889196294723029	0.974207858658472
Merged-chr19-61266681-4	chr19	61266204	61267204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-38286.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.72403184224631	5.70676589345096	5.54943077946929	5.47640174415044	5.41496729397327	5.19731712402272	-0.552398177793898	0.097965640428825	0.417291460898387
Merged-chr9-32471756-2	chr9	32471256	32472256	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	RSINE1|SINE|B4	69696.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.42039029121444	4.5540909853865	4.83552072685078	4.53049849413071	4.19144965786337	4.56891806477314	-0.432915821752129	0.343177770440814	0.732089657443708
Merged-chr1-134097339-2	chr1	134096839	134097839	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13903.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	4.03682681240959	3.87339314923617	4.07593901753866	3.77256821104007	3.84222485228521	3.74961879868396	-0.63079104581109	0.221226199370592	0.6157275086041
Merged-chr9-124080644-4	chr9	124080137	124081137	+	937.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEy-int|LTR|ERVK	-21546.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	6.83301495796306	7.06323983560959	7.04768653064967	6.95008302861436	7.14105721519401	6.92925342054065	0.0506661210790034	0.839891440321619	0.962784121274377
Merged-chr13-48872489-4	chr13	48871984	48872984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1599.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	3.71696039265069	3.79865103366517	3.9993738722556	4.12741263425088	3.77317258883522	3.65618410150068	0.104628581102526	0.848927354371752	0.964466784578983
Merged-chr11-50109011-4	chr11	50108517	50109517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-22343.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	7.5973090452806	7.81180524643594	7.44805176009438	7.79081977115748	8.01495259962188	7.53557634874677	0.247101278260087	0.330391304230668	0.721886788700559
Merged-chr7-92977637-4	chr7	92977158	92978158	+	783.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102221.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	3.74537313198503	3.90802451581727	3.95866074703931	3.53917572187499	3.71769016969048	3.50913407004233	-0.902572843092816	0.105786408485613	0.434165703722547
Merged-chr12-26455225-2	chr12	26454725	26455725	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1227.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	5.01746339810021	4.6941980584926	4.80111964196754	5.12642926402267	4.86290997803073	4.70512887186993	0.149866256645723	0.713729399547748	0.92559452444701
Merged-chr1-172643244-2	chr1	172642744	172643744	+	863.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10270.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	4.44494139253431	4.0400734983634	3.95237102385261	4.33685508858862	4.09383333672716	3.8587455601941	-0.15436628594446	0.77187924537099	0.943661248715554
Merged-chr5-137745207-2	chr5	137744707	137745707	+	600.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-762.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	4.58795409387592	4.1949931673026	4.57216700035665	4.26723886171975	4.3139723208811	4.34824347327002	-0.389924389152518	0.396225152337592	0.773450534314886
Merged-chr8-116633998-4	chr8	116633507	116634507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	MTD|LTR|ERVL-MaLR	98984.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	4.97023521682352	4.95683376859107	4.75491758778748	5.69986792631324	5.76257389037533	5.71471637991897	1.62468029112562	4.22583968416669e-06	0.000190892328143399
Merged-chr2-72979124-5	chr2	72978571	72979571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	210.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	8.20213130895165	8.04733408916084	7.83600747717574	8.04030388766004	7.60435167881168	7.80809538292156	-0.303988163477008	0.21574800866555	0.609112973600893
Merged-chr18-36745370-2	chr18	36744870	36745870	+	959.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010885)	promoter-TSS (NM_010885)	714.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	7.42654853502925	7.58930481515444	7.08388442768798	7.56337652371226	7.83072021565681	7.49852318017234	0.367207573588104	0.159151123633686	0.531158781765317
Merged-chr5-90896322-1	chr5	90895822	90896822	+	756.0	f0_balb.idr	Intergenic	Lx3C|LINE|L1	5077.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.39556208968242	3.30495850060952	3.23406277654389	2.98826617495296	2.96131916288908	3.13113753883085	-1.30052693848853	0.0479090893444478	0.277509189430756
Merged-chr12-113098087-4	chr12	113097545	113098545	+	903.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054081)	promoter-TSS (NM_054081)	-233.0	NM_001346696	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	3.72688655527141	3.54224453802198	3.43752087097743	3.73636940862878	3.22153789510488	3.33128097582494	-0.457841669014182	0.469062229318171	0.818883765302854
Merged-chr5-136954531-4	chr5	136953968	136954968	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	1193.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	6.1982834728205	6.29004771404318	6.44421737982677	6.33305518115452	6.48181621544627	6.66854184186623	0.307448521537074	0.271584179755621	0.6689720175125
Merged-chr17-47394408-4	chr17	47393912	47394912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008189)	TTS (NM_008189)	6194.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	5.57812593030201	5.44942048898878	5.74359995711402	6.15523846545893	6.11850648614585	6.04464536011233	0.934675528112287	0.00214637221196083	0.0325606816796421
Merged-chr12-80642927-3	chr12	80642433	80643433	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347409, intron 1 of 4)	intron (NM_001347409, intron 1 of 4)	1178.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	5.04273869174212	5.36531864436985	5.32089549791034	5.22966465289468	5.41360859697542	5.4139216510336	0.21286265556908	0.54952340712251	0.860344773173459
Merged-chr16-44777932-4	chr16	44777353	44778353	+	843.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	B1_Mur2|SINE|Alu	12117.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	6.34096803104871	6.40099534116882	6.15257526044285	6.07637560216043	5.92507177490225	5.85771260840083	-0.595511576322403	0.0403235042840806	0.250110931380528
Merged-chr15-100665139-4	chr15	100664636	100665636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	4364.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	5.66011421493226	5.48503308390355	5.71625155190948	5.51128475466125	5.56963609240578	5.56501998620602	-0.129757811424304	0.687099384617991	0.916983035113856
Merged-chr7-81861299-4	chr7	81860811	81861811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	-1376.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.05800637142105	7.00170443380324	6.96633905423496	6.59159856606187	6.44925170837356	6.78275951106989	-0.634498031259202	0.0133757253959365	0.123034198402065
Merged-chr6-65516877-4	chr6	65516372	65517372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73526.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	5.30557389533752	5.20837488980949	5.10465066419193	5.47862782530192	5.47245782554589	5.40064549082374	0.470685555257269	0.16768942186154	0.54370629508105
Merged-chr7-96546876-3	chr7	96546406	96547406	+	986.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204942.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.10151022499967	5.51176143314132	5.51385431733083	4.38980925037062	4.33846358109117	4.5834921242426	-2.170446811533	2.17752308428819e-07	1.41001821632258e-05
Merged-chr4-43030885-2	chr4	43030385	43031385	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023231, intron 2 of 9)	intron (NM_023231, intron 2 of 9)	499.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	6.64911191736819	6.8095716979837	6.10277523064027	6.50851213666013	6.41828609643562	6.32000381853977	-0.239207270910051	0.440703869556707	0.80190131151537
Merged-chr11-78511578-2	chr11	78511078	78512078	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	590.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	7.12595138692847	7.51855648748893	6.97438819027947	7.27811433524366	7.38153928830797	6.89862697571785	-0.0366657320697449	0.89782174050814	0.976179002491449
Merged-chr15-74594291-3	chr15	74593817	74594817	+	757.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42001.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	3.05442619473609	3.41714342663247	3.55965585962319	3.14560084915541	3.1003429395922	3.26153643772883	-0.771356039072835	0.24345235794987	0.640680222488828
Merged-chr12-20231049-2	chr12	20230542	20231542	+	882.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	584737.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	2.85619382361682	3.09983870990977	3.08880995936448	2.79550526892765	2.93176347187454	3.15996190243544	-0.240710980333867	0.732737867827454	0.931858722659821
Merged-chr13-43864655-4	chr13	43864163	43865163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	79551.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	3.84963966034536	3.86128748422262	4.19959856120683	3.80068336885045	3.39469451379508	3.53820634544534	-1.27783803922213	0.0275354931839416	0.197873159758996
Merged-chr4-118429172-2	chr4	118428672	118429672	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039176)	promoter-TSS (NM_001039176)	-529.0	NM_001039176	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	4.29059773706911	4.7167240802707	4.82659895062256	4.58691926847423	4.66314622249557	4.58761765414435	-0.0231149989799506	0.958332342485167	0.990016978751081
Merged-chr5-149221614-4	chr5	149221119	149222119	+	972.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37059.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	4.70976126978749	4.68735172246806	4.58354205705519	4.95637727881809	4.73850314729494	5.49422459092893	0.939619051621986	0.0327027255824568	0.220173832046692
Merged-chr6-84050631-2	chr6	84050131	84051131	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	31245.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	2.68735181736685	2.51201920592385	2.65365049758793	2.86546978022782	2.53497329517505	2.85119228862018	0.737349887910251	0.341356911032533	0.730816878642537
Merged-chr16-91862353-3	chr16	91861842	91862842	+	599.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	69288.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.54134711301671	6.6551237805987	6.92713053276649	6.83900782019351	6.69307607871681	6.57344609686958	0.00168930756442951	0.995036245125022	0.998961028701257
Merged-chr4-145225746-2	chr4	145225246	145226246	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 3 of 9)	intron (NM_011610, intron 3 of 9)	21124.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	2.85125937509114	2.91757878271359	3.52766020369943	3.22979924257316	2.95004050586848	3.06623927333247	-0.192451642945372	0.794623558717588	0.950805825047068
Merged-chr11-68899264-4	chr11	68898760	68899760	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2306.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	4.70380898569309	4.7084352167988	4.40158683090683	4.62349898136922	4.36357095945048	4.17587131972215	-0.529053081676953	0.248294259121819	0.645445615702094
Merged-chr12-85470172-2	chr12	85469672	85470672	+	823.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-3718.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.66404104985318	3.66165656054663	3.70591025779953	3.5481653727197	3.24142014151076	3.62179793565394	-0.737980699038835	0.208990914879746	0.600194667444521
Merged-chr11-95425064-2	chr11	95424564	95425564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	PB1D7|SINE|Alu	10981.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	4.43614197860369	4.83843042339525	4.41044558811791	4.69934389448875	4.40959386830475	4.68951076645253	0.03204719799565	0.943245873539275	0.987369647251762
Merged-chr7-90029396-8	chr7	90029007	90030007	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	348.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.92261328116099	7.93915241159844	7.70177240696726	7.99199854952777	8.2294129935596	7.82039859007989	0.240050849834172	0.308474011614916	0.704565421726157
Merged-chr16-24433079-2	chr16	24432579	24433579	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	MER33|DNA|hAT-Charlie	-15012.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.02871906053228	4.84220892515528	4.73004235926422	4.30900097108186	4.07688588978469	4.0616285648416	-1.83963160363194	5.45182413897268e-05	0.00169646740073163
Merged-chr10-117874158-4	chr10	117873673	117874673	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28199.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.99637665122972	4.80000290795849	4.84599062258408	5.12721601087304	5.05192842141346	4.83396485046903	0.286705248405256	0.455821225628463	0.811163679278426
Merged-chr9-88709688-2	chr9	88709187	88710187	+	963.0	f0_balb.idr|f0_c57.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9900.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	7.88993224220589	8.01467304589048	7.4875987122068	7.5805173518844	8.00160342436678	7.58577934384835	-0.11222016123237	0.675385590424559	0.912152821313949
Merged-chr8-35467312-1	chr8	35466812	35467812	+	749.0	f1_c57bl6.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28221.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	6.04605407679204	6.23368572012534	5.43922327732729	4.26489539486691	4.6077118951727	4.46680712770461	-3.16749413199146	7.9443148894869e-12	1.30124124670163e-09
Merged-chr10-117435126-4	chr10	117434635	117435635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12300.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	7.13346352901755	7.16845659140734	6.71786557804166	6.85887203175217	6.82801131948401	6.29654900488114	-0.512588242439498	0.088319027070015	0.394463210114966
Merged-chr16-37869388-4	chr16	37868877	37869877	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	977.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	7.43306846236273	7.58618490210454	7.46695491002535	7.59831724386747	7.61952489178004	7.73841367565665	0.221250900743539	0.321008797534978	0.714680187400013
Merged-chr17-35774084-2	chr17	35773584	35774584	+	633.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 1 of 2)	intron (NR_045459, intron 1 of 2)	1634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.11323577106081	3.00257505632261	2.91279527581341	3.21153700956814	2.91672752722938	3.28193731960195	0.554015160791571	0.420807506497325	0.789927346042947
Merged-chr3-21936096-4	chr3	21935583	21936583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140569.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.12031837038965	7.42493106139603	6.94468467666195	7.23903387096428	7.52483102268738	7.09881547475075	0.182342142201803	0.505295651761721	0.838055364884185
Merged-chr16-4082481-2	chr16	4081981	4082981	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4671.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	1.83704146433037	1.91114948450168	2.15894621760526	1.76951412910511	1.63822194322446	1.69363089579898	-2.83124779546741	0.0183341875494565	1
Merged-chr12-102440318-3	chr12	102439822	102440822	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-509.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.61669103709982	7.37390897752734	7.52854258787145	7.74892062007685	7.69016384729754	7.51520084318705	0.218043417910229	0.34488933539443	0.733373712840888
Merged-chr1-153754165-5	chr1	153753760	153754760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	4834.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	5.9905528489263	5.85390844715154	5.54329447499652	5.65751761280641	5.53078959202257	5.42057237683864	-0.50763019012873	0.12775738444478	0.477901296748842
Merged-chr2-75778323-4	chr2	75777859	75778859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-53818.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.63025846398458	5.35976864305217	5.45261709437121	6.00250701515027	5.9686556081005	5.96657652090746	0.893021052017633	0.00450240194037802	0.0568416390447014
Merged-chr11-60210519-4	chr11	60210022	60211022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-51.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	7.61180350133284	7.57946048882291	7.20341218755924	7.54875218942037	7.73308195116107	6.48900218060846	-0.165293112433513	0.779786232034951	0.945906447921338
Merged-chr2-157424167-4	chr2	157423659	157424659	+	899.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-134.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	6.01764447238208	5.24821148878382	5.44287891606386	5.13679908712391	4.64838243043766	5.00930969358185	-1.35736572491561	0.00135371205636673	0.0228385386833258
Merged-chr7-4410089-4	chr7	4409601	4410601	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	-12357.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	4.31860333733795	4.48241925531568	4.85900535893953	4.72904221401111	4.77289410848698	5.14701117155804	0.760594994863385	0.0872071301164847	0.391514561494144
Merged-chr4-105485379-4	chr4	105484877	105485877	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	328030.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.15328344499795	4.14708612911185	4.45168899751017	4.62621468625276	4.35878794457212	4.51827828040918	0.663317815960722	0.14583064381053	0.509223056367729
Merged-chr2-180042514-4	chr2	180042008	180043008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	25.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	8.48763331918377	8.64687470642708	8.44965783815406	8.60129859412831	8.43497216955383	8.73046227518901	0.0799169870821167	0.707389219452168	0.923368256411511
Merged-chr2-18936268-2	chr2	18935768	18936768	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	61853.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.78736121668186	3.55900149091931	3.5144115091515	3.46215232055159	2.93366105030989	3.47598227249649	-1.18506003291204	0.0873447333439622	0.391865642980445
Merged-chr13-55125098-4	chr13	55124608	55125608	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012017, intron 5 of 6)	intron (NM_012017, intron 5 of 6)	19799.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	3.6463419530942	3.28011632812131	3.68671344310391	3.48910894193224	3.42524518498562	3.75565367601051	0.040983648035655	0.945898788668474	0.98796006280508
Merged-chr3-108146755-2	chr3	108146255	108147255	+	626.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-603.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	5.39735426006657	5.25835916708169	5.38014758196489	5.19534301734941	5.74533936884728	5.47315950376317	0.303226124059759	0.401683266591408	0.777748903350594
Merged-chr13-29984417-4	chr13	29983901	29984901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-10.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	7.87206549724039	7.9203195087494	7.66620856371039	7.98553223653889	7.8272541802026	7.67598770157981	0.0142651120838892	0.950452256022085	0.988433654388255
Merged-chr11-98962412-3	chr11	98961903	98962903	+	694.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	URR1A|DNA|hAT-Charlie	1932.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.86386865073314	3.49221107663728	3.86845285319041	3.99145358573178	3.52263704672872	3.62613404194958	-0.0678881752367883	0.907903820463351	0.979069714243211
Merged-chr11-5787271-2	chr11	5786771	5787771	+	930.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1212.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	6.98921637700245	6.94077033695388	7.19278885449779	7.17009967671432	7.61809100472289	7.2503761083791	0.494584819400135	0.0588306478723764	0.31391968577017
Merged-chr12-84172454-4	chr12	84171945	84172945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	21570.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.24210902032348	6.11124364038827	6.21487653122519	6.05409171663448	6.29818885401033	6.12745991642856	-0.0303474713130584	0.915370209463588	0.980959026698783
Merged-chr13-5889678-2	chr13	5889178	5890178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28189.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.44301176538813	5.46517901366775	5.39312771091326	4.9733327675254	4.87016448038827	5.14222944598807	-0.92055860367772	0.00952739545263371	0.0971633191350344
Merged-chr11-120629579-4	chr11	120629077	120630077	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010756, exon 3 of 3)	exon (NM_010756, exon 3 of 3)	3970.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	7.53784796749782	7.47492262579605	7.3931922771543	7.47547191606598	7.906595794275	7.4717588898633	0.250457140659323	0.316709348323071	0.710742716211415
Merged-chr10-125764586-4	chr10	125764084	125765084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41B|LTR|ERVL	-201635.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	2.43187111245017	2.52181843378902	2.61372623340072	2.49182033811056	2.47122009975609	2.43379942386544	-0.331930663261163	0.674990499989856	1
Merged-chr2-22774379-4	chr2	22773900	22774900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	73.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	7.90494676566099	8.12779620263149	7.69929429835733	8.02370751608611	8.10230575171485	8.21305624707982	0.259987062511339	0.263341394269358	0.66138304194783
Merged-chr10-17727089-5	chr10	17726636	17727636	+	885.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	3908.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.43029815768915	4.57205563015091	4.51815563946347	4.58541485335091	4.66171578513718	4.88851317374505	0.487064522308105	0.245618428703968	0.642645689440908
Merged-chr8-123374335-4	chr8	123373830	123374830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359076, intron 1 of 16)	CpG	619.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	8.7517216684903	8.89091642438509	8.43283253155029	8.72984099128783	8.87960933318854	8.36081279015511	-0.0409790260873704	0.869016773963725	0.969772902205443
Merged-chr13-52069318-2	chr13	52068818	52069818	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27423.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.06497040073796	2.92371433510859	3.22523213519289	3.10499791989517	3.03127233878163	3.18531373553586	0.151399336171916	0.819127277482441	0.957209935971094
Merged-chr15-96562781-4	chr15	96562271	96563271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	79191.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.96211082324849	3.76844002739824	3.90666372739415	3.97791202496489	4.1678461588262	4.12034621898668	0.638130912567966	0.201346170172116	0.590977946905871
Merged-chr12-69500766-4	chr12	69500269	69501269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-25219.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.49371839244809	6.29623481767173	6.29645556893589	6.01570574669447	6.25372916562658	6.00933195677707	-0.435241087445985	0.131967739825806	0.485811837904656
Merged-chr5-3341533-8	chr5	3340905	3341905	+	941.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2488.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.33484384521661	6.42138842486336	6.23897292474516	5.86136766286566	5.65780411420994	5.79415812342532	-0.984278621542653	0.000749018362832144	0.0144202498691664
Merged-chr11-75648306-2	chr11	75647758	75648758	+	934.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008916, exon 12 of 12)	3' UTR (NM_008916, exon 12 of 12)	-3251.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	2.97014001958507	2.75664917719217	3.20308140621368	2.73414385199617	2.64250034022359	3.22131445907928	-0.454026721426504	0.562185446409801	0.86560636450104
Merged-chr10-81434132-4	chr10	81433607	81434607	+	895.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6934.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	5.13654327109971	5.26054884591693	5.13198992805075	5.12091742787905	5.09992403036686	5.02111801321957	-0.200628552282823	0.574812352576704	0.870900530475835
Merged-chr10-16621026-4	chr10	16620522	16621522	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	474760.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.52325234806814	2.55365638518401	2.82873060673736	2.5872646121017	2.56212674325288	2.60002661682666	-0.30388290395473	0.694475445730846	1
Merged-chr1-43915362-4	chr1	43914876	43915876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18618.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	8.10716987783162	8.2262998016395	7.76308752394287	8.10399033404003	8.56755594028382	7.64686815107224	0.169602241039802	0.572396867495471	0.869838344453715
Merged-chr9-123925928-2	chr9	123925442	123926442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42750.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	7.95678894173998	7.47798575500185	7.70553511094356	8.17858978342005	7.86347542601362	7.66057102355189	0.276018516807481	0.296609748241258	0.693189077959178
Merged-chr2-163418350-2	chr2	163417850	163418850	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	1120.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	5.49074176060541	5.51218721237845	5.73609604880556	5.7279911976884	5.85476818570685	5.72072846350732	0.367665525653337	0.246365441148096	0.643456125659878
Merged-chr2-132846632-4	chr2	132846139	132847139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024385)	promoter-TSS (NM_001024385)	-27.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	5.58727076105218	5.48944417354119	5.49129362312991	5.38330861566242	5.06755205405638	5.37727061245894	-0.492078317232482	0.154585977975897	0.523896269417052
Merged-chr12-4840999-3	chr12	4840530	4841530	+	900.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	565.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	4.88699810009241	5.05710837082009	5.16368265865287	5.32219909812851	5.236964250623	5.09269619298637	0.398208599230907	0.275740294352919	0.673242318833586
Merged-chr19-12455575-2	chr19	12455105	12456105	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5174.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.79191422037048	5.01332932429129	5.13146249295168	4.97902954559487	4.70552990220531	4.81117193398499	-0.322864177711546	0.415145819256441	0.786137484375978
Merged-chr11-98795823-4	chr11	98795319	98796319	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361932, exon 1 of 3)	5' UTR (NM_001361932, exon 1 of 3)	303.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.22802937186589	7.32175888550438	7.54763489136144	7.56070874326063	7.3538037415194	7.60450609709944	0.205628158930923	0.394504712777256	0.772466128739144
Merged-chr16-8823251-4	chr16	8822674	8823674	+	856.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6926.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.37286481040826	3.4498061346342	3.35543378324638	3.43304183066492	3.41826313990365	3.78875457253788	0.568083124727237	0.341967713023038	0.731142095278512
Merged-chr17-84181738-4	chr17	84181252	84182252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	6195.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	7.36767896138427	7.68783972319419	7.37908820516522	7.54486462957942	7.73607348518566	7.47872795090399	0.153272993689736	0.529033299457375	0.850706402188603
Merged-chr9-59751050-7	chr9	59750530	59751530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172071)	promoter-TSS (NM_001172071)	-144.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	7.58722413244173	7.33213111489661	7.63490371400487	7.30903143064187	7.59999823409427	7.4295379832813	-0.0949117681677318	0.695966694961641	0.919291538728398
Merged-chr2-166773218-2	chr2	166772718	166773718	+	657.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20549.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	2.88969127120352	2.8144594907828	2.7720707310389	2.99594601469771	2.95937564127854	2.97063536557576	0.714841990342177	0.303178578737954	0.699862332768671
Merged-chr3-54692713-4	chr3	54692210	54693210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019995)	promoter-TSS (NM_019995)	-105.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	6.06666837145269	6.00469183598672	6.38530417323793	6.16812496948429	6.27229956376627	6.19612419582122	0.109143340477656	0.709596168436269	0.92401439884764
Merged-chr17-25140469-4	chr17	25139938	25140938	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	3807.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	5.17257414294052	5.05087236637554	5.3181707144552	5.6345423077696	5.90390878160744	5.74687046830238	1.14585668549933	0.000674438883497923	0.0133108896152977
Merged-chr1-45905854-2	chr1	45905354	45906354	+	597.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19740.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.8403100342912	4.9617615935175	5.36226928039826	4.81372569105632	4.9606602535096	4.84613146636419	-0.394950967468087	0.3271023298172	0.719317370353337
Merged-chr11-58011971-2	chr11	58011471	58012471	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	2907.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	2.77374075992936	2.83288004854774	2.92052070858041	3.09732713475714	2.88574327782983	3.05272134479978	0.829278486059132	0.232407203705713	0.628761339174128
Merged-chr7-128400824-4	chr7	128400332	128401332	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	17340.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	4.26445234728265	4.20592608387954	4.72330178059751	4.39873872058847	4.31450711655599	4.75255341588544	0.217378460141395	0.651021943091699	0.902735752871093
Merged-chr17-31227122-2	chr17	31226622	31227622	+	730.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177823, intron 6 of 13)	intron (NM_177823, intron 6 of 13)	19056.0	NM_177823	328795.0	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	2.91996385251004	2.96267389468568	2.83811642311847	3.06214585681206	2.90200296036427	3.2075446784784	0.679525823922603	0.326198254157142	0.718559664091347
Merged-chr18-55203485-3	chr18	55202993	55203993	+	669.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-210902.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.35972453067317	3.74639774199326	3.69866472989388	2.91298460710488	3.02948300134899	3.46636783176599	-1.86539444978912	0.00996741388404412	0.100177385489014
Merged-chr4-62664106-6	chr4	62663642	62664642	+	892.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-9832.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	7.57991314928573	7.69373683575551	7.63824241521585	7.81962371489181	8.05069700293891	7.98246819462784	0.458026152108737	0.0371508762464805	0.237861532187527
Merged-chr8-106168844-4	chr8	106168389	106169389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357382)	promoter-TSS (NM_001357382)	-32.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	5.40583443900434	5.70426283410849	5.04476071808939	5.62799745805468	5.41626580879561	5.35999043936152	0.0898633342286449	0.811623189164001	0.955304895434479
Merged-chr11-98781171-2	chr11	98780671	98781671	+	662.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5794.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	3.2258975304139	3.07819215629793	3.54146198485939	3.20815087967957	2.82989939802648	3.46183140375903	-0.411649796032553	0.569342981439573	0.8688875602138
Merged-chr2-167740266-2	chr2	167739766	167740766	+	813.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	49089.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.67121697625685	5.71640702029893	5.80215274724366	5.54703467845219	5.5662662495873	5.66012140705947	-0.257106249876276	0.411369486560335	0.783877099438722
Merged-chr7-25280842-2	chr7	25280342	25281342	+	962.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-1337.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	4.47669935254693	4.36886032574096	4.36362152100306	4.58791686927919	4.31470634912894	4.5170332530906	0.168981282446643	0.700628493067696	0.920963265211875
Merged-chr5-74704569-4	chr5	74704055	74705055	+	972.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1652.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.61470518330212	5.67062017755117	5.44959215782814	4.20791996243337	4.04633003329888	4.41534635308844	-3.30741944325461	6.45154412904071e-14	1.52505705650347e-11
Merged-chr7-63919622-2	chr7	63919106	63920106	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256311, intron 2 of 2)	intron (NM_001256311, intron 2 of 2)	2749.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.31192291311106	3.54203697924704	4.1421466482997	3.50104823835134	3.70899855809648	3.91112424283296	0.0157170920746367	0.980569759613199	0.995512982807197
Merged-chr2-165886581-2	chr2	165886106	165887106	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1768.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.62123604208336	5.43246886337746	5.53846011502053	5.60932366930158	5.53980918800208	5.85686429550099	0.248272883125745	0.450370532326514	0.80833544550959
Merged-chr13-67128591-4	chr13	67128082	67129082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172392, intron 1 of 3)	intron (NM_172392, intron 1 of 3)	354.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	6.68794011266805	7.00155826706306	6.88783546819751	7.11993289190664	7.30475636397497	7.0025865575359	0.441347297780878	0.0871120568122845	0.391280460797426
Merged-chr15-79357713-4	chr15	79357206	79358206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001304830, exon 3 of 3)	exon (NM_001304830, exon 3 of 3)	9304.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	6.98933453866022	5.81184669372651	6.02306260751976	7.498582089082	7.30825176044518	7.02806077932811	1.38117067597457	0.031805500823002	0.216300004404004
Merged-chr5-3802979-6	chr5	3802510	3803510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	114.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	5.9189201316991	5.96573521372411	6.11436963777209	6.33843697725239	6.08683263087458	5.81765608982168	0.188601830305194	0.544303247008468	0.85765692399006
Merged-chr7-127613764-2	chr7	127613264	127614264	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362197, intron 1 of 3)	intron (NM_001362197, intron 1 of 3)	669.0	NM_177226	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	2.43389235456571	2.26498313383033	2.47623141761903	2.20481571431207	2.25627882215015	2.36035478352918	-0.797133678176797	0.349547797727462	1
Merged-chr11-116828064-4	chr11	116827569	116828569	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026280)	promoter-TSS (NM_026280)	-23.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	3.40613859946527	3.35577206114978	3.44645245111116	2.77582771863611	2.78666202648113	2.87715391946694	-3.07412595178784	9.54518016701096e-05	0.00272839351197749
Merged-chr17-55958431-4	chr17	55957895	55958895	+	782.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028381)	promoter-TSS (NM_028381)	-792.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	6.10754071957839	6.38247551003352	6.56351911782598	6.11659845752536	6.48408500611815	6.54024558211561	0.0580068396001656	0.848972258725102	0.964486887293016
Merged-chr10-99417190-1	chr10	99416690	99417690	+	702.0	f0_balb.idr	Intergenic	Intergenic	153959.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.35525928476159	3.21756252322353	3.18462025108762	3.22960233100149	3.15103063122138	3.36930686881765	-0.0428090474346282	0.945489790736527	0.987909250703712
Merged-chr17-34142652-3	chr17	34142147	34143147	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2769.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	5.42240597122987	5.38692346241984	5.92974371731453	6.2242500215677	6.47431848972308	6.4288170141508	1.38868355583611	2.01274534191313e-05	0.000733902341848851
Merged-chr3-90255097-4	chr3	90254636	90255636	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357152, intron 1 of 9)	intron (NM_001357152, intron 1 of 9)	1278.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	5.13594514199814	5.11464083053378	5.37790881960513	5.25720073324944	5.15084067325402	5.09182102961528	-0.0709347271326438	0.843465544513155	0.963470993188878
Merged-chr5-65294414-4	chr5	65293906	65294906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011258, intron 8 of 24)	intron (NM_011258, intron 8 of 24)	41233.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	4.79396661865739	4.46762911154619	4.38142233770885	4.7343818994312	5.04880217139605	4.67465416878965	0.630018320704133	0.151895604111968	0.519634796559235
Merged-chr4-41192128-2	chr4	41191628	41192628	+	670.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026275, exon 5 of 5)	3' UTR (NM_026275, exon 5 of 5)	56107.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	3.40418494211317	3.36517333463283	3.64913490249205	3.14481279034391	3.14311207350618	3.18440221079053	-1.29324607856249	0.0408607798164257	0.252053063011725
Merged-chr7-3646053-5	chr7	3645517	3646517	+	907.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	748.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	6.60734498647773	6.63299199938343	6.70800324455297	6.78423048759141	6.62184936418384	7.00621827563952	0.245608984927117	0.353463094198895	0.740735826287885
Merged-chr13-43791562-6	chr13	43791145	43792145	+	884.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	6533.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	5.91138203935315	5.41190970760811	5.78240352717704	5.98716453991922	5.55924651250557	5.35188383427155	-0.0936427273827264	0.801261546246214	0.952883757432754
Merged-chr15-88505964-3	chr15	88505441	88506441	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94361.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.4338729606335	3.59503580031077	3.68716346238654	4.5236596481216	4.60833599879796	4.18777030251543	2.80984319306758	4.31556399297385e-07	2.58709977469286e-05
Merged-chr3-107106208-4	chr3	107105699	107106699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	4632.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.78742274251604	5.72873796409748	5.6642922220219	6.00188773966363	6.23319456904129	5.69914960107403	0.4968041338265	0.124234502815332	0.471601469447498
Merged-chr12-80111335-8	chr12	80110895	80111895	+	786.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	1618.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.64653397482994	5.71803311758179	5.44002242410583	5.70005053115236	5.53132262280086	5.44152801095368	-0.0946062673258362	0.774405920361435	0.944467091324401
Merged-chr11-80155827-4	chr11	80155345	80156345	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	1683.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	7.90403172547672	8.03809731445626	8.1340244564464	8.15683649690597	8.37411700328131	7.90230380760319	0.198457791355952	0.400712700031211	0.776924744715187
Merged-chr2-120159081-4	chr2	120158588	120159588	+	965.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4513.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.54156780192517	6.68930793365883	6.03564487758635	6.59821192370166	6.86751362846198	6.17106368552183	0.201992767504808	0.552009938570534	0.861546661145201
Merged-chr15-50697300-3	chr15	50696835	50697835	+	957.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191714.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.83793282735695	5.53002787232172	5.15231446792413	5.1572345337198	5.13973348985432	4.90913532548783	-0.927096750920463	0.0173148316867222	0.146699166580672
Merged-chr3-138521456-4	chr3	138520955	138521955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4736.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	6.81709596461024	6.97001280386094	6.77212686039199	7.00517075193094	6.9111139593064	6.87597332515161	0.111539095012963	0.652365475704059	0.902954729229878
Merged-chr8-72317258-4	chr8	72316757	72317757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.45353426395028	7.38084886437051	7.0557573828136	6.40900344829618	6.54173143298417	6.424543505393	-1.31375234122591	5.89181428537451e-07	3.39740875299683e-05
Merged-chr7-126475315-8	chr7	126474813	126475813	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289541)	promoter-TSS (NM_001289541)	-183.0	NM_011363	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	6.82201690391636	6.68780348887031	6.77733592915927	6.85448760953784	6.7221846026854	6.6268489049691	-0.0334786987681459	0.89523749885767	0.975665889379756
Merged-chr2-112433563-4	chr2	112433063	112434063	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21462.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	4.72883046027576	4.8707799545218	4.72964904174319	4.4214574974983	4.7431926186256	4.63624472518021	-0.394020352465788	0.343531415675316	0.732367959280244
Merged-chr13-17914789-4	chr13	17914302	17915302	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019491, intron 1 of 4)	intron (NM_019491, intron 1 of 4)	29415.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	3.65304309133091	4.08537304298906	3.84577216157767	4.12686196382489	4.20322012779726	3.91697969016189	0.639449081657904	0.229617678561716	0.625238163419178
Merged-chr4-19567071-1	chr4	19566571	19567571	+	646.666687	f0_balb.idr	intron (NM_027769, intron 1 of 15)	PB1D9|SINE|Alu	3037.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	2.96022280264941	2.98949387777248	3.02474512333441	2.9655033451661	2.74410806110157	2.79081150643114	-0.761217018085423	0.280356041946208	0.678217620115832
Merged-chr7-128173458-2	chr7	128172958	128173958	+	747.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029872)	promoter-TSS (NM_001029872)	-488.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	4.04736750192778	3.6528468092417	3.5096601727823	3.52339527759682	3.36256844810169	3.46588164859242	-1.10958934800702	0.065081507248206	0.33272950897451
Merged-chr10-77622341-4	chr10	77621875	77622875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	54.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	8.60989397695159	8.71143613528143	8.60692634402757	8.46635338537044	8.6656963992666	8.43797091040937	-0.156658575289724	0.446064549477752	0.805559175972758
Merged-chr6-72147790-2	chr6	72147290	72148290	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	MARNA|DNA|TcMar-Mariner	-24593.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.62344087984207	3.21736498590995	3.63248889722809	3.16922039088851	3.33297970034507	3.49799344514385	-0.625492623897039	0.325790810210151	0.718259738003882
Merged-chr6-119480183-11	chr6	119479775	119480775	+	914.636353	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133940, exon 1 of 1)	exon (NM_133940, exon 1 of 1)	607.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	5.86425504394695	6.09296503220915	6.31871997371675	5.80023864531078	6.07713243557543	6.2472384540522	-0.08006596567153	0.802220766844455	0.953179859597221
Merged-chr11-120071247-4	chr11	120070732	120071732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 13 of 25)	intron (NM_009734, intron 13 of 25)	15595.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	4.50749073010632	4.10454099557846	4.19832513515363	4.35696917827348	3.96832152947964	4.02057744768365	-0.435018042902243	0.387926193834792	0.767896302403897
Merged-chr6-72374987-4	chr6	72374467	72375467	+	888.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5501.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	5.48082169839539	5.31880694550825	5.00941245602411	5.33445665437372	5.24299914876333	4.95900184557824	-0.19795614975597	0.602972417401861	0.882484631305431
Merged-chr17-87531916-6	chr17	87531496	87532496	+	928.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85061.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	4.47570414159083	4.74640590611412	4.42941941943824	4.48696340913956	4.51141293797132	4.58248308306693	-0.101752950257349	0.813195425440967	0.955933854959943
Merged-chr6-116108168-4	chr6	116107651	116108651	+	814.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85223.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.4971756681105	5.43799389559372	5.18298730559884	5.48088933930115	5.30611309606861	5.52887630003867	0.0868822030629779	0.80175005699454	0.953083301080086
Merged-chr18-20651264-4	chr18	20650792	20651792	+	841.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-13958.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	4.22008185024749	4.31020886414201	4.58705489070084	4.46170384681924	4.39021043598558	4.45246888249989	0.161071266910384	0.718831463048904	0.927541728733398
Merged-chr16-55965844-2	chr16	55965344	55966344	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024218)	promoter-TSS (NM_024218)	-431.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	4.34421174507066	4.43687938256358	4.10080002369208	4.07891079431506	4.2005523054904	3.96394469063722	-0.59777220392477	0.21944906366461	0.61370328275355
Merged-chr12-85985763-4	chr12	85985253	85986253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	93288.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.40711232416971	6.63660931746126	6.82360038671506	6.82164431906959	6.90195281738934	6.93774891726486	0.410247339327432	0.121973600374034	0.4671659074763
Merged-chr15-80814946-2	chr15	80814446	80815446	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	16336.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	2.55024931412052	2.61823526982045	2.65694001782477	2.32396550526307	2.27870333718481	2.41527828220186	-1.81020133759928	0.0333556667718595	1
Merged-chr14-9487668-4	chr14	9487167	9488167	+	914.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-396428.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.49303176984758	3.37836298938189	3.54783171554303	3.31770776886228	3.18301867776535	3.29045479548781	-0.833078878370908	0.169002628084972	0.545635945763902
Merged-chr17-94835370-3	chr17	94834871	94835871	+	730.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-572.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	4.51916329523461	4.65461824598572	4.71671912973499	5.00941668212567	4.81523575222799	4.66193229658494	0.493340535508472	0.226940768747	0.621938195306645
Merged-chr1-185208500-4	chr1	185208019	185209019	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	4351.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	7.4412135698311	7.67183687269553	7.10644271001941	7.31521803200657	7.35010201134871	7.34738160141118	-0.147974154328111	0.564698326585743	0.866552552710737
Merged-chr6-122852904-4	chr6	122852426	122853426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3231.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	6.97025885345266	7.02776249067067	6.66161414423299	6.72091899303589	7.00124138467625	7.01919320905345	0.0229317177749905	0.931529977121416	0.984929477721491
Merged-chr3-116649088-4	chr3	116648580	116649580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13597.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	6.33107179871488	6.70241790883716	6.67600222088694	6.46800793998462	6.63562191144783	6.58847804471993	-0.0168396620859331	0.951497812327108	0.988832566975918
Merged-chr5-122821380-4	chr5	122820867	122821867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021505)	promoter-TSS (NM_021505)	-25.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	6.92717034373083	7.03879736792453	6.86880688981586	6.8406064518321	7.10014589801193	7.15231025328353	0.131566759291216	0.60144413161216	0.881943853341137
Merged-chr9-119065167-1	chr9	119064667	119065667	+	610.0	f1_balb.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	12389.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	3.09735303432524	3.08607494538042	3.10731455364884	3.32007691279001	3.61753181836026	3.67544407326336	1.83416934411682	0.00433754805060058	0.0553216888709952
Merged-chr7-101900503-1	chr7	101900003	101901003	+	1000.0	f0_balb.idr	TTS (NM_027532)	TTS (NM_027532)	3282.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	7.62990663791126	7.74709887252302	7.25856356583719	7.76237060583367	7.83867698671879	7.49846242437924	0.207046416976578	0.418808496803604	0.788755230826602
Merged-chr19-41335910-4	chr19	41335403	41336403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	49167.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.52689298789968	7.64035676039515	7.3853994152663	7.49482091815119	7.93286639232898	7.52738083122669	0.217954727381286	0.38778673030934	0.767721672469137
Merged-chr10-39258511-4	chr10	39258025	39259025	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-94731.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	4.08135900069209	4.03234556453848	3.7772680521189	3.67384554769755	3.52785856374814	3.74160373391211	-1.09442086850189	0.0434486787397716	0.261900728816206
Merged-chr11-94073489-4	chr11	94073000	94074000	+	735.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	B3|SINE|B2	29295.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.37517402621567	6.5178190036165	6.26413069796426	7.22459714050437	7.73147971763906	6.39222274315551	1.30460164691976	0.000431559528798951	0.00935622857537862
Merged-chr10-67490031-4	chr10	67489521	67490521	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47848.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	3.99035738649602	3.39956110950222	3.81801839618458	3.61489147488559	3.63160928283034	3.88705026159302	-0.155825248984474	0.792542752592621	0.949977808464961
Merged-chr5-121375094-1	chr5	121374594	121375594	+	718.0	f1_c57bl6.idr	exon (NM_001163470, exon 8 of 12)	exon (NM_001163470, exon 8 of 12)	10315.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.7696298842008	2.6936526519744	3.10506202045328	3.14909630755777	2.65031597322684	3.23160157543164	0.772867592201369	0.321538531108559	0.714904288597718
Merged-chr4-150025332-2	chr4	150024832	150025832	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-16309.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	2.39731488518842	2.19389658578309	2.46378744980033	2.3770041549856	1.98917537708039	2.06762200715289	-1.39900284673376	0.160311864201065	1
Merged-chr9-118747506-1	chr9	118747006	118748006	+	550.0	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	MIR|SINE|MIR	35814.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.95051404662016	4.94025762122409	5.15334517844169	4.63065578432476	4.26615548275777	4.48371293468151	-1.29521679223764	0.00214326460185988	0.0325253986853104
Merged-chr11-61493281-2	chr11	61492781	61493781	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291037, intron 1 of 5)	MIRb|SINE|MIR	980.0	NM_001361989	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	5.58097103064643	5.75693038493621	6.03207541059556	5.53899655672832	5.76912550934156	5.19081938547441	-0.474697489620605	0.194512341226129	0.581837828980254
Merged-chr4-88698973-4	chr4	88698498	88699498	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7730.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	5.23315104727651	5.30150714576033	5.31758459825695	5.21987817703832	5.05663203410888	5.28851506640721	-0.203228836918112	0.562462097218305	0.865745518569294
Merged-chr1-136137780-4	chr1	136137305	136138305	+	862.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	6415.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	7.8666869689173	7.67464343813534	7.88679813872885	8.12758256482148	8.21379472100061	7.97402973804579	0.4316675653251	0.0504202238332321	0.285731724937838
Merged-chr4-63594041-4	chr4	63593519	63594519	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6745.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	4.3426946688335	4.37004906443089	4.51205222992847	4.33959004633689	4.05712417853298	4.4572826509635	-0.321768665488724	0.487299948504984	0.828390996694439
Merged-chr11-100931747-4	chr11	100931241	100932241	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	7799.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	7.07688705873659	6.93385176969232	6.62399218154806	7.28185087914088	7.58528363359979	7.24969446302457	0.72923369328151	0.00666022341329633	0.0753684033419776
Merged-chr8-111248044-3	chr8	111247527	111248527	+	865.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	11175.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	5.18098950320612	5.33161522678913	5.42039427252919	5.68820097956444	5.63647604354813	5.65172779241918	0.670940878607085	0.0411908185357997	0.253375148127953
Merged-chr17-34972299-5	chr17	34971757	34972757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-101.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	7.25932010591617	7.16676771858356	6.78128559134022	6.85327574542377	7.17350112346697	6.75879209840419	-0.217164763886153	0.439584418815053	0.801216871474848
Merged-chr9-46013240-4	chr9	46012786	46013786	+	968.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357241)	promoter-TSS (NM_001357241)	466.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	7.4834464088017	7.39443836928382	7.01162557980314	7.25502893274452	6.66695747685669	7.06975855147954	-0.454753206954297	0.116132048150111	0.455079356182438
Merged-chr9-57643292-5	chr9	57642794	57643794	+	578.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2359.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	5.16234967462913	5.41331703008121	5.70385067749906	5.85646289598954	5.52144648476201	5.68919721890654	0.488638454334413	0.169074356683281	0.545689142612633
Merged-chr16-32113748-4	chr16	32113266	32114266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13964.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	6.83453845163783	6.67665264185464	6.92526350035012	6.40982033635395	6.72879653481994	6.62467373664614	-0.334336582901451	0.212451599377751	0.604985375805061
Merged-chr2-109278219-3	chr2	109277726	109278726	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	64.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	4.99901187162005	5.14146561568333	4.80578926858298	5.03474450660013	4.90867081008505	5.15980584967557	0.0654718287504654	0.864480688033125	0.968282137207473
Merged-chr2-144011398-4	chr2	144010898	144011898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024281)	promoter-TSS (NM_024281)	-135.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	7.73303887647508	7.25841779208529	7.3803306337298	7.510462152214	7.26173194281644	7.51003192893447	-0.0712867156686652	0.782946996538515	0.946833581227703
Merged-chr13-9418805-4	chr13	9418298	9419298	+	928.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142273.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.73726348936739	4.6237087658262	4.91600114598973	4.61252101012485	4.64408372595222	4.68717820268746	-0.255675866418066	0.52970548625731	0.851048470960073
Merged-chr5-24577487-4	chr5	24576925	24577925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	42.0	NM_013853	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	6.30292928915538	6.47174567876434	6.28018561769875	6.68644134028261	6.59451862092616	6.45713035250549	0.369308581935783	0.171705860787317	0.54999812389387
Merged-chr13-30974058-4	chr13	30973563	30974563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	-16.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	6.86677466198087	7.45208879652947	6.9445543025869	7.05312628832654	7.08513623429428	7.0576534754017	-0.0878267062903523	0.752595299952677	0.938346259574037
Merged-chr6-127267033-4	chr6	127266538	127267538	+	799.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	40929.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.08731600227631	3.82435187705493	3.83620414603047	3.99124525423123	3.71510942979255	3.44601516962255	-0.576352889755396	0.32098979975676	0.714680187400013
Merged-chr15-95824428-4	chr15	95823937	95824937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_155276)	TTS (NR_155276)	5635.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	8.28991919070762	7.95519287622767	7.93732624760364	8.08010703598464	8.33344212013033	7.66947950998715	-0.0122002738903904	0.963626206362149	0.991121100730027
Merged-chr4-150202898-4	chr4	150202396	150203396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1761.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	5.68873785711909	5.8374288699096	5.97574176580796	6.04774295047305	5.7469892709835	6.26096667647971	0.334641480622547	0.302995996971085	0.69972220909689
Merged-chr3-87017922-4	chr3	87017414	87018414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18574.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	6.37474646526137	6.37662069871868	6.28586906393699	6.67478250044783	6.71066249013706	6.46358199219989	0.449237961078654	0.092280923758471	0.404702775708351
Merged-chr4-145258228-4	chr4	145257732	145258732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11362.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.15859882535481	6.26200198765633	6.39696737408526	6.35578928259455	6.23126548843499	6.09256039581926	-0.0569504257778217	0.84098090699618	0.962832831784718
Merged-chr9-100646624-1	chr9	100646124	100647124	+	703.0	f1_c57bl6.idr	intron (NM_009282, intron 1 of 33)	PB1D10|SINE|Alu	3176.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	3.06125522384907	3.09370711464662	3.21933211907603	3.01498037319286	3.051999616096	3.06180608967851	-0.356070582109382	0.585008750397489	0.87477799647552
Merged-chr6-131245224-4	chr6	131244724	131245724	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170851, exon 2 of 9)	exon (NM_001170851, exon 2 of 9)	2138.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	5.99608918782387	6.26742135174065	6.28770840854361	6.13794346516213	6.246111604435	6.30893947889885	0.0745883654907269	0.795551447290784	0.951191137415711
Merged-chr1-171226440-4	chr1	171225946	171226946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131173)	TTS (NR_131173)	1392.0	NM_013474	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	6.12310943801995	6.15877750649554	6.17757610752384	6.42281740377768	6.46077356596746	6.31952780328858	0.425513348186997	0.117718686360966	0.458037711233261
Merged-chr6-4797495-4	chr6	4797007	4798007	+	813.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50201.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	4.15647305113523	4.05366726118331	4.0726514160306	3.73494954694838	4.00936283960328	4.04668658622433	-0.469194249420213	0.351612679574547	0.739403630741215
Merged-chr10-61151595-3	chr10	61151082	61152082	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3898.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	3.12679668032951	3.14764966901565	3.19557062733035	3.11768209010327	2.75677080721942	2.97264989372047	-0.930939226696761	0.182302528305505	0.56505974204673
Merged-chr4-32161040-4	chr4	32160521	32161521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	196914.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	5.68912575054521	5.72422506206917	6.05403572494111	6.03374450146743	5.82178618201244	5.86548161421911	0.158017468163148	0.616611449278915	0.888421011873208
Merged-chr15-58980363-4	chr15	58979866	58980866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46556.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	5.5666697561813	5.86026687472522	5.41362142983502	5.09383739567533	5.11067285658338	4.78049731164253	-1.22929068935129	0.0011696734135438	0.0203441022981088
Merged-chr4-108459412-4	chr4	108458931	108459931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	5.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	8.08356600305354	8.45022840427507	7.99937258475788	8.58430284398111	8.55105842427767	8.23369151607559	0.378172257506511	0.12086797088759	0.464932449718459
Merged-chr9-89253597-4	chr9	89253097	89254097	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	42213.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	3.79868606867349	3.81642147797495	3.85276709220382	3.68879591026357	3.55290065672071	3.92133250232535	-0.336667633850381	0.533404652728576	0.852457858765356
Merged-chr17-74339337-7	chr17	74338859	74339859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162870, exon 1 of 17)	exon (NM_001162870, exon 1 of 17)	372.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	7.7312465652037	7.38695604681809	7.15049308722835	8.04139142586564	7.82418021495463	7.52548414167827	0.528369433101141	0.0562254464863313	0.305598468301957
Merged-chr19-37174247-3	chr19	37173739	37174739	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290828, exon 2 of 11)	exon (NM_001290828, exon 2 of 11)	396.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	6.84069616721121	6.71929341171185	6.8518244656801	7.10029638271923	7.07508770902381	7.07432204663912	0.431007052644583	0.0733531399273175	0.355851683014939
Merged-chr7-126200481-4	chr7	126199999	126200999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	2.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	7.98318558877382	8.2169810652945	7.67119848062726	7.79182962489622	7.97815558910023	7.5701810582813	-0.265193621442747	0.305443255496249	0.701557468278683
Merged-chr2-167921116-2	chr2	167920616	167921616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11211.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.30757186921498	3.50047119937033	3.80219210264886	3.33514282503222	2.94739211266763	3.13251786263617	-1.62193705781884	0.017909674471697	0.15022461627429
Merged-chr19-10696018-2	chr19	10695518	10696518	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-4750.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	4.08681685724708	4.43987726043924	4.51260088784241	4.42733625538821	4.29516465273399	4.32632427674887	-0.0108319710034736	0.981407063123504	0.995707008747156
Merged-chr12-80812092-4	chr12	80811608	80812608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	21576.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.51924655741148	6.39723540660226	6.39876034591884	6.34163805290258	6.50492834337609	6.38241983432628	-0.0413639971219496	0.877372957490574	0.971560353131186
Merged-chr8-117268219-4	chr8	117267719	117268719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	11200.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.84075667397661	6.69435712172263	6.83773045673518	6.45384705407672	6.70231532842643	6.7787571283139	-0.220385941534082	0.401761434540713	0.777753227258936
Merged-chr2-181497107-4	chr2	181496599	181497599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-43.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	8.14657147607337	8.52731063200696	8.14474703664771	8.24241479275861	8.52396280036234	8.05710693514454	0.00793063705604163	0.974602931289839	0.994296985713596
Merged-chr6-46281201-4	chr6	46280698	46281698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 10 of 23)	L1MB1|LINE|L1	-963198.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.33830526581856	3.80255198393085	3.8101534105184	3.86751489604984	3.73979984519326	3.98351997526788	-0.466695961351749	0.39750070152595	0.774432517094084
Merged-chr11-96889018-3	chr11	96888439	96889439	+	925.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27575.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	5.96243868449156	6.27271476333631	6.27048686941943	5.4146325093992	5.59679459659441	5.73789846761086	-1.04714878448818	0.00101497772277309	0.018222157281695
Merged-chr2-14055229-4	chr2	14054712	14055712	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012396, intron 1 of 5)	CpG	823.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	3.41318833516081	3.21920215889269	3.5380887306264	3.34059319722723	3.07445906987929	3.16628383141009	-0.792043325065041	0.216565727050818	0.610067901049387
Merged-chr19-60165452-1	chr19	60164952	60165952	+	675.0	f1_balb.idr	Intergenic	Intergenic	20777.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	3.24800462948064	3.51187698320106	3.35683253999106	3.90124341602374	3.88620337844532	3.91751269958107	1.83673868077511	0.00177593423337497	0.0281738676245308
Merged-chr2-117961734-2	chr2	117961234	117962234	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	L1M5|LINE|L1	139806.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	5.38385473821231	5.23232133018288	5.20704789884498	5.24284021960062	5.31009619916775	5.56722218756165	0.181345120026133	0.605333742014515	0.88352351689788
Merged-chr7-100961320-4	chr7	100960833	100961833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3033.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	7.62809043444865	7.63891415895631	7.23951828847732	7.23282569372974	7.47342261368038	7.35537653126503	-0.239815459005771	0.336395526507389	0.726414494996627
Merged-chr5-117978082-4	chr5	117977592	117978592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346588, intron 2 of 11)	intron (NM_001346588, intron 2 of 11)	1322.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	4.72632654865504	4.3281713107702	4.93171690513809	4.6460308755516	4.41246864062262	4.67554370476512	-0.237887462482196	0.600142130038033	0.881490627508743
Merged-chr7-114091208-2	chr7	114090708	114091708	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	26573.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.03061338628651	3.66871902708445	3.90427558460619	4.51338510838575	4.50055757607468	4.7180585734541	1.95488790781409	9.71851326445629e-05	0.00276464291182523
Merged-chr8-120535184-4	chr8	120534698	120535698	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145897)	promoter-TSS (NM_001145897)	-659.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	2.71647948590688	2.6427660800039	2.51901999358262	2.69229302063491	2.67140390491504	2.8438552626191	0.556966021895728	0.463963945861429	1
Merged-chr1-156989729-1	chr1	156989229	156990229	+	934.0	f0_balb.idr	Intergenic	Lx10|LINE|L1	-50103.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	2.81296622446889	3.0035411640545	2.68798968396071	2.7909435220061	2.56899093524723	2.94845081016543	-0.35902823772676	0.640631616548227	0.898526347210755
Merged-chr5-24452505-4	chr5	24452002	24453002	+	807.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139153, exon 1 of 18)	exon (NM_139153, exon 1 of 18)	325.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	6.69520621010727	6.72460930617518	7.0695793707616	6.89739515909887	6.41408190799195	6.54419808125415	-0.312190518491644	0.284107322435488	0.681818241959277
Merged-chr1-131974270-4	chr1	131973762	131974762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	3653.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	7.36377049776535	7.41825805158421	7.28624421382342	7.39577847233106	7.60185667614133	7.297039062532	0.12618785312	0.593097648343593	0.878410931874355
Merged-chr10-119064753-2	chr10	119064253	119065253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.92055036017249	5.7966944334144	5.96056405688196	5.97035271859024	6.10547115790973	5.90263472943258	0.198743813030907	0.504040182349668	0.837420592739604
Merged-chr7-4866267-4	chr7	4865773	4866773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-94.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	6.12463936518092	6.45381814625886	6.19443922667738	8.12093297043136	8.35890654608389	7.97683717951839	2.84140093222865	2.57646816007289e-26	5.35956906658363e-23
Merged-chr4-123990874-4	chr4	123990374	123991374	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	73441.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.30216615330614	6.62103185470665	5.70783786292669	5.10172187259266	4.9051711253836	4.69883798787368	-2.56320609823083	5.37476822791864e-10	6.13475603166878e-08
Merged-chr7-122311309-2	chr7	122310809	122311809	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	22184.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.70779941976316	4.56009287243417	4.47587217064667	4.78273792695539	5.06637238294316	4.49913092999341	0.531204824066255	0.224942541710559	0.619841463303568
Merged-chr4-19682706-4	chr4	19682200	19683200	+	950.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	26304.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	5.6340072963842	5.53347173008047	5.26077319030016	5.24001929512815	5.50519782883226	4.99588995751996	-0.414939046997393	0.269619746913368	0.666761702690033
Merged-chr6-28480175-4	chr6	28479680	28480680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019776)	promoter-TSS (NM_019776)	-168.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	7.20584218909539	7.29572084882878	7.14479054475678	7.32882111086823	7.36447140318921	7.03042224294407	0.0573054904711475	0.814580916516279	0.956369939298364
Merged-chr5-88504873-2	chr5	88504373	88505373	+	925.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_017468, exon 10 of 10)	3' UTR (NM_017468, exon 10 of 10)	16898.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	2.97478584145124	3.15163009545567	2.827945546046	3.27435049046275	2.78491893872898	3.32298360655436	0.671366796938008	0.371095788282453	0.75531758888986
Merged-chr1-105785284-3	chr1	105784799	105785799	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	4576.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.72697702636417	5.03096949004678	4.93385321808267	4.94161203579764	4.89956536091771	5.25873222846721	0.279160970101684	0.479590836965561	0.824363039494411
Merged-chr9-62373233-2	chr9	62372731	62373731	+	647.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 3 of 6)	intron (NM_009672, intron 3 of 6)	31888.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.97921809135221	3.69747063986058	3.66360750969633	3.8185586335743	3.51990064720919	4.12219533420344	0.139413127800021	0.810116699360502	0.954958386398407
Merged-chr7-141463524-2	chr7	141463024	141464024	+	851.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001025103, exon 2 of 10)	exon (NM_001025103, exon 2 of 10)	380.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	3.13936657432703	3.02425875820715	3.56049224773943	3.04689709330218	2.99539156595755	3.38176911389052	-0.447784394579164	0.519462119907743	0.84582839931823
Merged-chr17-72908973-3	chr17	72908473	72909473	+	920.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-9332.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	2.90713867827533	2.4617448767516	2.78768837408912	2.54928612877029	2.35690396360181	2.67808690768842	-1.14146442255068	0.174286513055694	0.553423314145592
Merged-chr10-58383455-4	chr10	58382958	58383958	+	790.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-10915.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.56102979768623	4.37848457598572	4.43975938487106	4.51219308922838	4.56628415979525	4.46371701606566	0.139118853596888	0.744721066053484	0.936032341688524
Merged-chr14-103469633-4	chr14	103469155	103470155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43686.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	7.31142798532984	6.93474177262375	6.36610448304799	7.04566655369899	6.88161788908329	6.42701452762087	-0.186763959563812	0.58989682489167	0.877024090368969
Merged-chr19-11447429-2	chr19	11446929	11447929	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021718, intron 1 of 6)	intron (NM_021718, intron 1 of 6)	3871.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	4.27015714480002	4.49220998791305	4.34392787015452	4.21781645385973	4.43834819046741	4.69185880877899	0.209406035199756	0.648756690188174	0.901933817637397
Merged-chr14-70883006-4	chr14	70882491	70883491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7116.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.79056996903395	4.59545179294405	4.6488494946702	4.53599375498522	4.69356071864229	4.46030288045624	-0.2535889987686	0.545672533957788	0.858320955132605
Merged-chr7-141901831-2	chr7	141901331	141902331	+	800.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347562, intron 1 of 6)	intron (NM_001347562, intron 1 of 6)	630.0	NM_023764	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	6.38515354668991	7.04992628704069	6.6868515395674	6.56295193294539	6.42043021947615	6.22495122971225	-0.520509156568842	0.0940199525031892	0.408458842368578
Merged-chr2-28818043-2	chr2	28817543	28818543	+	759.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22317.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	2.69537296124322	2.52862550294858	2.6546321262432	2.62026182524952	2.26351009789292	2.47160682927715	-1.0178495612062	0.228646005354807	1
Merged-chr4-88094584-4	chr4	88094102	88095102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081184)	promoter-TSS (NM_001081184)	-28.0	NM_001081184	230393.0	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	7.43903331603504	7.53755066431775	7.13548526805572	7.123400941592	7.18364277644924	7.00474543697422	-0.416691993444259	0.0950119072345466	0.411038189267585
Merged-chr7-29231625-4	chr7	29231127	29232127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	895.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	6.40633041256806	6.37592837698434	6.44860345337178	7.17814294924412	7.04306808874889	6.65251157957752	0.906904559648326	0.000976618324831168	0.0176888934463591
Merged-chr15-31460141-1	chr15	31459641	31460641	+	544.0	f1_c57bl6.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-6452.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	2.63142564865369	2.52607178595106	2.75406923928603	2.84073969383447	2.54381160898724	2.64012802157455	0.23689586058853	0.758215916817131	1
Merged-chr9-99180507-4	chr9	99180035	99181035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40324.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.54212215651275	7.55000708215185	7.23497497280481	7.65826896935493	7.72110077426741	7.40924998807133	0.220888138549412	0.365157525104003	0.750338480639737
Merged-chr8-46891669-2	chr8	46891169	46892169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-95218.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.11901016512881	6.17903395394877	6.50410286797229	6.01318830570553	6.12875297840099	5.94777084235497	-0.388558654904505	0.194453026073849	0.581744054706534
Merged-chr17-65699043-4	chr17	65698560	65699560	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	-56856.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.39548069227982	5.54822474537553	5.36464220338894	5.17084834860136	5.18872976213144	4.94265342349813	-0.656348012197616	0.0649460275345288	0.332289802563676
Merged-chr8-104372194-2	chr8	104371694	104372694	+	681.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	B1_Mur2|SINE|Alu	23613.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	3.66242164097138	3.43586473614016	3.83499847805439	3.73653595668516	3.72502614826307	3.7043462704105	0.257883734437181	0.643891017471247	0.899990653857957
Merged-chr4-102623349-2	chr4	102622849	102623849	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33506.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.53291009521965	5.07790701873765	5.94299020526461	5.77621397157996	5.10973549099134	5.78084447531747	0.053187551589945	0.901060948682206	0.977068600768154
Merged-chr10-83921419-4	chr10	83920934	83921934	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	179263.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.68083669736904	5.27145611334587	5.29761142942056	5.72150838331046	5.73043297482356	5.6346534189719	0.488370604543922	0.153553660212761	0.522532447327076
Merged-chr19-5528163-1	chr19	5527663	5528663	+	652.0	f1_balb.idr	Intergenic	Intergenic	-17646.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	3.1548593624652	3.23128043277632	3.02733972806226	2.8448269872505	2.7987960311973	2.85120231060618	-1.54640711495862	0.0285912382907544	0.202624968545873
Merged-chr17-36849668-4	chr17	36849179	36850179	+	955.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	12533.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	5.35966549414246	5.27480695331651	5.39897923295454	5.69904048867668	5.49851924647921	5.43204775287909	0.40316163589508	0.228191448804052	0.623147576440797
Merged-chr6-38342470-4	chr6	38342011	38343011	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12092.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	5.9800196092902	5.77053533555048	5.99354396499078	6.45581237420901	6.62384911532004	6.19036573451655	0.897382764208883	0.00262613693755307	0.0380449184324014
Merged-chr13-112927509-4	chr13	112927030	112928030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	-150.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	6.84894189056515	6.98386937733422	7.01298842360106	7.03645854882065	7.30280940989748	6.84232615316677	0.210316268318459	0.422516790464067	0.791302462376693
Merged-chr4-59450407-4	chr4	59449903	59450903	+	876.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11770.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.76452782082286	4.32848085799784	3.90943551315999	3.71077533211218	3.91410757538451	3.87743510258248	-0.58282258479905	0.290475476054203	0.68827326449472
Merged-chr4-119140329-4	chr4	119139832	119140832	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31587.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	3.54824879712153	3.70809481282651	3.83454874918903	3.86250566072728	4.1844989495203	3.74789085714267	0.82352762592609	0.134938659424018	0.490990947514131
Merged-chr13-100152852-4	chr13	100152351	100153351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 12 of 15)	intron (NM_001126182, intron 12 of 15)	27996.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	6.16910105190877	6.14596711640852	6.46801838763825	6.49446862464074	6.78184828976621	6.19330262488034	0.433281614844906	0.158758420390539	0.530580157180119
Merged-chr12-4196790-2	chr12	4196290	4197290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138305, exon 6 of 21)	exon (NM_138305, exon 6 of 21)	37175.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.86528081244061	5.82267509129027	5.97426164275041	5.35488819984273	5.49280034240093	5.64845870753371	-0.711241468821473	0.0255636977880472	0.189518031406905
Merged-chr8-41041879-3	chr8	41041374	41042374	+	900.8110960000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005865)	promoter-TSS (NM_001005865)	57.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.75094199821834	4.91272415589669	4.84732760455367	5.12426305147018	5.48444503184385	4.95286351509024	0.813050588758016	0.039557415566545	0.247146225744187
Merged-chr1-62707143-3	chr1	62706656	62707656	+	773.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	3839.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	2.81738928251196	2.64585328627212	2.92983942866159	2.73021679949527	2.47404001466369	2.7655879793513	-0.760161171552195	0.326707790645492	0.719057870285937
Merged-chr11-74652159-3	chr11	74651653	74652653	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	2658.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	3.04959425665604	3.06270126821999	3.10631331282535	3.02280273782763	3.23806573192095	3.45019639917349	0.734097337852168	0.264959556381126	0.662790696671811
Merged-chr3-9886822-4	chr3	9886318	9887318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-53139.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.02742840535997	4.79510599507046	5.21999428880893	5.52732167758308	5.68808874535319	5.84823671091384	1.33939976011799	0.000202784660716752	0.00507467851095322
Merged-chr1-182562804-4	chr1	182562309	182563309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2198.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	2.72968032347539	2.77421514579757	2.69909512335087	2.69238334470171	2.57810562501483	2.95181156179903	0.0389352871588663	0.95869789822435	0.99015359851262
Merged-chr12-33578139-3	chr12	33577649	33578649	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148525.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	3.0854272397897	3.69945143873327	3.06479752953221	3.34108498698107	3.33164399951245	3.55009776636182	0.314050699497884	0.656901404169716	0.904720876497753
Merged-chr6-30047247-2	chr6	30046747	30047747	+	691.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	-741.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	6.5706675107411	7.03841521070935	6.8922080516756	6.74020966601148	6.91710714280961	6.57012177570559	-0.139539328747385	0.621066626252966	0.890517830251339
Merged-chr4-136141523-1	chr4	136141023	136142023	+	1000.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-2299.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.92044976444574	8.09014147427235	7.86464926040051	8.05663740867687	8.43586312991604	8.02271303583809	0.321990879364591	0.175492442966987	0.555442754830951
Merged-chr2-25581860-4	chr2	25581402	25582402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1803.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	6.56790878563122	6.62852592365241	6.46642467730361	6.24102082256993	6.64017263147044	6.45246484946642	-0.157475709180577	0.572671376180526	0.869921264041146
Merged-chr6-124966132-4	chr6	124965619	124966619	+	885.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164089)	promoter-TSS (NM_001164089)	-581.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	7.44994371218604	7.84785420441133	7.35683311072674	7.51536164067921	7.6048270840843	7.42510471573541	-0.083324179543363	0.742584645777207	0.935299421834751
Merged-chr12-72843723-4	chr12	72843224	72844224	+	844.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74041.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	4.92197941274913	4.90005266539375	5.01638097831259	5.0225124490085	5.00665060462234	5.04628859544998	0.175972036578005	0.633019037353453	0.895817001600499
Merged-chr11-23688282-4	chr11	23687788	23688788	+	923.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	ID4_|SINE|ID	22312.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.76974460274516	5.87602512046398	5.92880576217194	6.08147487746243	6.29837783365683	5.89233075484587	0.448547061624279	0.142451987066447	0.503788887275797
Merged-chr11-6522961-4	chr11	6522494	6523494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2036.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	4.1362224977491	4.1365830533233	4.09713581313158	4.33191233695025	3.96152297121841	4.01832601284278	-0.030511366478241	0.95036244426305	0.988425934178221
Merged-chr10-12868776-1	chr10	12868276	12869276	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-7041.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	7.17748718107436	6.99473604806898	6.51317162433565	7.30492258708458	7.20623134421756	7.02990908576591	0.379260122705427	0.185322567552816	0.569470877644115
Merged-chr7-30094934-7	chr7	30094428	30095428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011981)	promoter-TSS (NM_011981)	-148.0	NM_011981	26466.0	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	5.79617449537256	5.93777384911342	6.23871771866137	6.02073135791529	5.67612453447442	5.89528650529634	-0.223831564205051	0.488755571472944	0.829423271678195
Merged-chr8-85553281-1	chr8	85552781	85553781	+	565.0	f1_balb.idr	exon (NM_019794, exon 3 of 9)	exon (NM_019794, exon 3 of 9)	1990.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	3.15994286869811	2.95336695538077	3.31724512743224	3.00513958227081	2.98486508028504	3.38726722630557	-0.0642284134214259	0.925480641537844	0.983209542798957
Merged-chr15-84466618-4	chr15	84466113	84467113	+	993.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19516.0	NM_001163145	72301.0	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644|Shisal1	RIKEN cDNA 1810041L15 gene	protein-coding	3.03958877731562	3.11781644052449	3.10916865761686	3.04712065837332	2.90348196674093	2.87752845738384	-0.666463660917609	0.32465974394902	0.717563375758146
Merged-chr7-47056475-4	chr7	47055980	47056980	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5840.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	7.45955590422754	7.66141793814276	7.2480421424231	7.24768466459436	7.31605402892446	6.57676692088091	-0.550751028284361	0.0680705959135753	0.341417536171971
Merged-chr1-191202090-3	chr1	191201593	191202593	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18760.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.86635816172762	6.94945299557695	6.44397168042132	6.27644349067442	6.51826513149161	5.88083715594027	-0.819914185605568	0.0115279694046834	0.11117515973863
Merged-chr10-86916006-2	chr10	86915506	86916506	+	776.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 31 of 68)	MTC|LTR|ERVL-MaLR	91936.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	3.28277257172508	3.31764087082167	3.6927414131977	3.44404634451701	3.39134206243803	3.45674221942988	-0.019909370446963	0.973847419696111	0.994171004920731
Merged-chr1-45873457-2	chr1	45872957	45873957	+	861.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52137.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.76461942885796	6.0271229530925	5.88026826598462	5.61691935217444	5.65843955558789	5.68820226353164	-0.440320809570849	0.156141198217751	0.526447458215594
Merged-chr11-97685833-4	chr11	97685336	97686336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085500)	promoter-TSS (NM_001085500)	-116.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	5.63888280273306	5.53431601657001	6.04977015821157	6.12700712802525	6.03728376420681	6.00093752981602	0.552218806526593	0.0859900735245813	0.388266185001677
Merged-chr19-32494831-4	chr19	32494338	32495338	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9069.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	4.79245123997717	5.06893599869276	4.73104752152487	5.58960255710481	5.6864094762378	5.22697260668039	1.30554095022484	0.000737901701333197	0.0142391755019788
Merged-chr6-53572577-2	chr6	53572076	53573076	+	837.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-798.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.87792478275462	6.70356095069552	6.61120210424361	6.58488221041822	6.83918849509343	6.75153713265533	-0.013794810003919	0.958202711973475	0.990000537228272
Merged-chr6-86537840-2	chr6	86537340	86538340	+	854.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	B1_Mur3|SINE|Alu	10439.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	4.30544180378274	3.88678231145233	4.12061884706967	4.39940727486307	4.50058771230773	4.0905832921342	0.633744853728124	0.204645232219002	0.595326381235491
Merged-chr1-143777804-3	chr1	143777332	143778332	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	554.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	8.40739798160935	8.75956412499033	8.03646308518768	8.33862774264206	8.45678483682057	7.88919230118171	-0.257699010477855	0.362219407442575	0.747732809914909
Merged-chr8-41021575-1	chr8	41021075	41022075	+	734.0	f1_c57bl6.idr	intron (NR_015457, intron 2 of 2)	B4A|SINE|B4	4107.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.2428214887938	3.16195686674743	3.5141578905724	3.66266270508038	3.69632837468309	3.88259782037885	1.65202847768973	0.00633783577130666	0.0727290910024665
Merged-chr18-44842252-2	chr18	44841752	44842752	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 7 of 29)	intron (NM_001163013, intron 7 of 29)	13587.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	3.89578010084435	4.29792870267539	4.18830570628329	4.54104832349381	4.72315877374701	4.25845359529892	1.02774563371293	0.0357123780097377	0.232295010947414
Merged-chr19-23057511-3	chr19	23057021	23058021	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83705.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	5.94923761085713	6.24497772754657	6.27570096796803	6.24952201355014	6.28817235228302	6.335493445088	0.217450617412684	0.448883165804014	0.807454029128485
Merged-chr1-119504823-4	chr1	119504316	119505316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022327)	promoter-TSS (NM_022327)	-34.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	6.87651467933623	7.18131214946502	7.30394950063266	6.79068639301792	7.16521258727508	7.09436067481545	-0.149843253407316	0.579545933163248	0.872571259966152
Merged-chr7-16402070-3	chr7	16401577	16402577	+	836.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	881.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	6.05504207821691	6.29649624736259	6.33432906525932	6.32884978266288	6.66321573815317	6.48607795647634	0.4518904447614	0.114639882240523	0.452186398382538
Merged-chr6-129209308-4	chr6	129208820	129209820	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28705.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	5.58690647240599	5.80441159030393	5.52198180151986	6.21155268657942	6.3555977876555	5.73496049446628	0.860364735708348	0.0109183699484729	0.106894426011594
Merged-chr12-54696937-4	chr12	54696408	54697408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U1|snRNA|snRNA	-1014.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	7.89608081737017	8.35998314240673	7.83679740106652	8.17957062323235	8.66809827259429	7.87583405125313	0.328565268099061	0.265212642066777	0.662995749469502
Merged-chr19-46077378-2	chr19	46076878	46077878	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039351, intron 1 of 12)	intron (NM_001039351, intron 1 of 12)	1531.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	3.03898546194857	3.07583941870892	2.93269029438922	3.29991102283875	3.03683729448767	3.18951303479217	0.687602626669592	0.302399524129794	0.699062610540422
Merged-chr8-110846611-4	chr8	110846112	110847112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	12.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	7.14369034667688	7.50857033334444	7.1080072781073	7.39921659042726	7.39752699912863	7.04435687281256	0.0370476377013206	0.888909097760936	0.974207858658472
Merged-chr19-5640543-1	chr19	5640043	5641043	+	551.0	f1_c57bl6.idr	intron (NM_009045, intron 6 of 10)	intron (NM_009045, intron 6 of 10)	3053.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.06550197213211	2.92871086454273	3.07530896626707	2.78723418024935	3.01565916059827	2.97144519584202	-0.431784620853942	0.533138962656097	0.852197548492566
Merged-chr2-45109558-7	chr2	45109158	45110158	+	987.31427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	CpG	619.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.63131985299226	7.99009536751929	8.17727072552282	7.99695303006371	7.84369442623845	8.33443001210424	0.172001403515448	0.515929540765212	0.84400489988974
Merged-chr17-50121894-2	chr17	50121394	50122394	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	68603.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.05245936608595	4.26491968635026	4.0164281693701	4.17900825748839	4.63233701175742	4.61790547065541	0.982337954896909	0.0436240532564791	0.26245390679205
Merged-chr17-48323308-4	chr17	48322794	48323794	+	767.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 5 of 5)	PB1D11|SINE|Alu	7132.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	6.09697726275833	6.44124851710119	6.55805753747508	6.68070635740121	6.6490132732142	6.40222156192333	0.349351442031306	0.228653929771167	0.623879728108581
Merged-chr10-99349491-3	chr10	99348985	99349985	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86254.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	2.83167145186824	2.78585928768939	3.00845682979613	2.85423668677168	2.75845784974784	2.71778267868641	-0.481910011547244	0.503330195140307	0.836987118114029
Merged-chr5-64298441-4	chr5	64297949	64298949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68092.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.60296816899235	5.39304349945823	5.24807663614087	6.18039560958593	6.47308522777082	6.00982504331892	1.44455634609943	1.56118741182978e-05	0.000588405762785139
Merged-chr3-65188480-4	chr3	65187968	65188968	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289450, intron 1 of 14)	intron (NM_001289450, intron 1 of 14)	365.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	6.0337670869778	5.80321221993107	5.64766250784784	5.99641008625188	6.31492716020968	5.82226581334618	0.396579230699209	0.22863306596327	0.623870247133639
Merged-chr10-29361907-6	chr10	29361536	29362536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001110196, exon 1 of 3)	5' UTR (NM_001110196, exon 1 of 3)	406.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	8.49453588303096	8.34753363158707	8.21218760358637	8.33616906286951	7.78644599960293	7.99373428160428	-0.42162497329782	0.0887390548426537	0.395468870191609
Merged-chr10-63338565-4	chr10	63338064	63339064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019812, intron 1 of 8)	CpG	471.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	6.42292872877478	6.07965927560683	6.63804580061883	6.58039759843515	6.1806983658658	6.25205490067535	-0.0691099459586189	0.825650768721648	0.958871344165038
Merged-chr1-4807776-4	chr1	4807270	4808270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008866)	promoter-TSS (NM_008866)	-53.0	NM_001355712	18777.0	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	APT-1|Gm39587|LPL-I|Pla1a	lysophospholipase 1	protein-coding	6.93387846019019	6.68769975159714	6.71901749464849	6.7330429481744	6.65798234576513	6.55944525545552	-0.207905316387986	0.423728336642306	0.792159956139484
Merged-chr4-43499656-4	chr4	43499156	43500156	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013377, exon 4 of 12)	5' UTR (NM_001013377, exon 4 of 12)	6291.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	5.46411918519399	5.46512773297291	5.42733064435552	5.34344688886853	5.51477744877618	5.4305062424772	-0.0355632591012486	0.914248472077882	0.980912729144991
Merged-chr7-80773603-1	chr7	80773103	80774103	+	1000.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	29728.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.88605143916077	6.95564676359222	6.70787426451701	6.64153322243598	6.69024624103165	6.71851585914801	-0.278574231245571	0.271123966596716	0.668361183862025
Merged-chr5-147564375-4	chr5	147563864	147564864	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010228, exon 30 of 30)	exon (NM_010228, exon 30 of 30)	134208.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.70782553128988	3.53961351812302	3.3239330007876	3.65798959549502	3.87491075966472	3.94106661155036	0.966704600013591	0.100391617517791	0.42256855923804
Merged-chr14-75181236-2	chr14	75180736	75181736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44811.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.33664609896665	6.92254270113008	7.01219176535289	7.18220628549272	7.34194817321285	7.31600897696001	0.262428734382829	0.30481603367852	0.701123221294327
Merged-chr12-17267690-1	chr12	17267190	17268190	+	716.0	f0_balb.idr	intron (NM_027959, intron 1 of 12)	intron (NM_027959, intron 1 of 12)	1095.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	4.09179737219486	3.99205651370272	4.31594258240402	3.99521068558857	4.17243340159218	4.11882839839829	-0.089034206351334	0.854969476010487	0.966038421653227
Merged-chr4-19699161-2	chr4	19698661	19699661	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	9843.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	4.71889708075628	4.84672457699425	5.25276015855064	4.52902475599786	4.54040518953633	4.72767899304891	-0.809054114519539	0.0578866563135901	0.3109465618747
Merged-chr8-125731744-2	chr8	125731244	125732244	+	810.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2459.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	4.88035651010486	4.69950903592056	4.80659231222947	4.82346833113979	4.39572067289386	4.90774710746916	-0.187081869851126	0.662227182227744	0.90668833008286
Merged-chr1-4870704-4	chr1	4870225	4871225	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	MTD|LTR|ERVL-MaLR	12397.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	4.86249730186824	4.59141896774405	5.08537869254439	5.1215098021827	5.16852538329482	5.44552115188748	0.842096571670233	0.0337273852262272	0.224511061592313
Merged-chr11-79531644-2	chr11	79531134	79532134	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 36 of 57)	Lx5c|LINE|L1	-1025.0	NM_010161	14017.0	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	2.96919358724558	2.80253664810884	2.85662379514745	2.84430849631702	3.08313497182984	2.99063823497763	0.479785470344146	0.493103599526628	0.831208279358962
Merged-chr3-20057759-4	chr3	20057267	20058267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009210)	promoter-TSS (NM_009210)	-44.0	NM_009210	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	6.42166330533461	6.64064738370458	6.54566659483008	6.42026753278549	6.79157814682146	6.57033452507043	0.113463920939684	0.68148420961989	0.914693263933768
Merged-chr7-83568297-4	chr7	83567811	83568811	+	854.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16620.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	4.43224791436018	4.17883523011087	4.57535817474803	5.18991959170534	5.11380520381584	4.72756891779363	1.49537789185756	0.000563250436952507	0.0115322200683918
Merged-chr1-55131157-4	chr1	55130671	55131671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025283)	promoter-TSS (NM_025283)	-74.0	NM_001310585	19070.0	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	7.96437867037599	8.01460248736837	7.63452476125848	7.66383292855508	7.67411515856234	7.75476048842006	-0.277446615023658	0.229882695987269	0.625591292769121
Merged-chr1-133660852-2	chr1	133660338	133661338	+	687.583374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	47.0	NM_001166552	667118.0	Mm.245357	NM_001166552	ENSMUSG00000102049	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	7.34008299157849	7.56037274196864	7.19134540208644	7.41325437301303	7.32177886406288	6.91823956929297	-0.20000384187438	0.453953476999729	0.810013744085466
Merged-chr9-103234727-4	chr9	103234218	103235218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4432.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	5.91951432633077	6.04273786593156	6.3326513332318	6.05387238286802	5.6716515070795	5.62246059250463	-0.526734745134673	0.110621381714922	0.444451179610587
Merged-chr2-39005905-2	chr2	39005405	39006405	+	759.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	-774.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	5.35252463961668	5.29451553051144	5.54958876040472	5.35174633778091	5.56658845198282	5.63809092970474	0.246254642822684	0.467964725056676	0.818205691164444
Merged-chr10-78092851-3	chr10	78092325	78093325	+	888.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23457.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	2.83200186651441	2.99445033812479	3.00098247667481	3.23280538364595	3.35180032863739	3.19455047369836	1.45430092075552	0.030615376966723	0.211599326077505
Merged-chr1-151820722-3	chr1	151820238	151821238	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	65364.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	4.17812519896592	3.67920191832861	3.92743153254705	4.15516302823759	4.04448168087779	4.09538457807297	0.442414266910208	0.397834221268532	0.774593722474986
Merged-chr7-123368601-10	chr7	123368120	123369120	+	925.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	1295.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	6.95504541803812	7.12005074098018	6.70520204612759	6.78557759212903	7.2610770351517	6.99104568788965	0.134372045223255	0.630590761535202	0.894783738152105
Merged-chr17-33920902-4	chr17	33920408	33921408	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025313, intron 3 of 7)	intron (NM_001025313, intron 3 of 7)	1430.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	5.63719474097186	5.57477638192134	5.67924765359668	5.54788194455789	5.76820278303101	5.76654909669947	0.131077593486649	0.678876936110113	0.913553914280182
Merged-chr3-30864853-4	chr3	30864363	30865363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	8913.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	6.70373630511487	6.94110179327961	6.99068513563837	6.79408346695124	6.92294002820461	6.48066514899826	-0.191253902895442	0.486782510782579	0.827985697457807
Merged-chr11-51921569-4	chr11	51921072	51922072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46059.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	8.55026722848146	8.53604197709156	8.4343165837136	8.25869225560436	8.57155613985522	8.35036602410043	-0.146040939982776	0.494349998016304	0.831945364054378
Merged-chr11-121340496-4	chr11	121340020	121341020	+	857.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 3 of 9)	intron (NM_025793, intron 3 of 9)	13927.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	5.1009921453149	5.15060521646929	5.34481642835233	5.10267774584772	5.03026646070595	5.34905049594775	-0.0798897638542795	0.827169142528952	0.959357353767392
Merged-chr14-20735892-2	chr14	20735392	20736392	+	864.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039138, exon 20 of 20)	3' UTR (NM_001039138, exon 20 of 20)	-1330.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	3.26657012721066	2.89201682630148	3.33259286633798	3.06441801199576	2.92890189192281	3.06814489059223	-0.684015467115891	0.323039808938939	0.716449793892136
Merged-chr3-127496758-1	chr3	127496258	127497258	+	844.0	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	2357.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.51878041580526	2.52866206388221	2.49714310402683	2.90070221602062	3.07482444713233	2.8893014046899	2.7903898077877	0.0009791956066014	0.0177200756924944
Merged-chr3-75297192-4	chr3	75296674	75297674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27096.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	6.00135442219241	6.06602348335367	5.77216321810096	5.88098605367925	6.2497704587134	6.14400839155785	0.246375482984621	0.425206641243831	0.792988748085012
Merged-chr4-9644944-2	chr4	9644444	9645444	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-1227.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.10462284497423	4.05606482727008	4.13062413327894	4.72539959940669	4.76491792457571	4.52459121902198	1.53557017989559	0.000586975079902665	0.0119357337362026
Merged-chr3-142620159-4	chr3	142619671	142620671	+	800.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-492.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	7.95595752953373	8.09409667417324	8.00338766684979	7.70163379438809	8.01264415889837	7.78232401326682	-0.249442341360806	0.267129368250154	0.664550966981069
Merged-chr6-72163344-4	chr6	72162877	72163877	+	955.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40180.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	7.23824896954032	7.26921199611852	7.37876896880509	7.25699565713904	7.62251064295073	7.30346581664689	0.176960238783463	0.471346231992377	0.819965655571108
Merged-chr11-61700231-2	chr11	61699731	61700731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178618, intron 2 of 4)	intron (NM_178618, intron 2 of 4)	15821.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	2.96987707368147	3.00738099620901	2.92252330800956	3.11867168295735	2.89404895962726	3.11539360839125	0.337152585791238	0.618741787693138	0.889515655407396
Merged-chr2-5710137-3	chr2	5709626	5710626	+	696.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	4636.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.65452294365936	4.47032509947042	4.72358067383966	4.61810879312409	4.56966871715587	4.67400536020274	0.00800431967958968	0.984600267396017	0.99669844825285
Merged-chr2-34943912-4	chr2	34943409	34944409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001326601, exon 10 of 10)	exon (NM_001326601, exon 10 of 10)	17863.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	6.31703566540256	6.17460079405884	5.86827069792391	5.66674717595776	5.29471847285009	5.75090537841115	-1.01637016950225	0.00250506173583068	0.0368093481830516
Merged-chr4-101647440-4	chr4	101646981	101647981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175036)	promoter-TSS (NM_175036)	-302.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	6.77954632994529	7.14838682762685	7.02636564151286	7.25520373875441	7.58340435920212	7.09729227610205	0.522944186974363	0.0552726507886731	0.302176069159414
Merged-chr12-81755799-2	chr12	81755299	81756299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	25371.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	2.76546785897301	2.93449761482835	2.74501110187887	2.80018755781406	2.76448445787068	3.22420235253492	0.577757271132314	0.438723066866825	0.800720144919925
Merged-chr14-55147944-1	chr14	55147444	55148444	+	541.0	f0_balb.idr	Intergenic	Intergenic	-31009.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	5.37963510508848	5.73573565446659	6.03059636805338	5.45745784716859	5.68923109094354	5.80232889699908	-0.142500559548383	0.690183828982054	0.917730412802448
Merged-chr2-167367983-4	chr2	167367478	167368478	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18800.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.20699885664458	6.77268857446126	6.39160101970974	6.80634104532994	6.92004983553922	6.32462687249368	-0.195512758185084	0.561022619775129	0.865361577760505
Merged-chr19-4200648-2	chr19	4200148	4201148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011237, intron 3 of 10)	intron (NM_011237, intron 3 of 10)	955.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	3.59908662101483	3.30415811154973	3.88951170763544	3.58830664222266	3.63200456405499	3.76920028779885	0.175593933063457	0.768567028301442	0.942871018290895
Merged-chr11-49083327-2	chr11	49082827	49083827	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-3690.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	4.51386457079032	4.18222749754622	4.30703457720264	4.38876501501149	4.13984133837966	4.18945054902759	-0.269652127573778	0.565832142678468	0.86688237163883
Merged-chr4-129746146-6	chr4	129745609	129746609	+	871.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3806.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	6.45958594946444	6.03949612364103	6.03113091946741	6.77501669537764	7.14230651616216	6.42436948136251	1.00247426670731	0.00214777609737511	0.0325760396482662
Merged-chr7-43922258-2	chr7	43921758	43922758	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR53|LTR|ERVL	-11513.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	3.64171096860076	3.7913300257823	3.68641265121593	3.72188746296338	3.42806040741848	3.4221037979948	-0.618306311446338	0.2813775605819	0.679520750186356
Merged-chr11-17001137-4	chr11	17000636	17001636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	RMER19C|LTR|ERVK	7582.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.29161910965539	7.58103500126368	7.34016093297454	7.24168656795584	7.53963971524597	7.71462263771285	0.142078158803024	0.578993014456522	0.872437129840066
Merged-chr16-4882043-2	chr16	4881543	4882543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2192.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	3.75823425913734	3.96265196847424	3.62832150515246	3.54303676965626	3.46827631076782	3.69932345020053	-0.790300619142518	0.160424344376527	0.533005464258189
Merged-chr8-47533564-4	chr8	47533057	47534057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177240)	promoter-TSS (NM_177240)	-87.0	NM_177240	320714.0	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	6.7201898304412	7.03962324968103	6.82439511007183	6.89831107595017	6.83171813120464	6.91178908278382	0.010227945650654	0.968063287239799	0.99266738336646
Merged-chr11-8574745-4	chr11	8574247	8575247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	89788.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.63408619223578	7.89053530259755	7.3252400644057	7.44919238677759	7.74644728420871	7.19741409553855	-0.219599764205013	0.43286926430846	0.797550668598533
Merged-chr12-52850530-4	chr12	52850037	52851037	+	925.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151154.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	2.69344933236352	2.94118918551061	2.7687061982651	2.80488844802159	2.80389412826709	2.9026358274554	0.138309308919866	0.847969050267542	0.964318271116593
Merged-chr15-73494452-2	chr15	73493952	73494952	+	836.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18108.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	4.20141940130341	4.01735129581794	4.07647415772723	3.97617443570289	4.08813301108364	4.14473175111401	-0.0927252076926246	0.847557482124906	0.964318271116593
Merged-chr8-72144556-4	chr8	72144050	72145050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 3 of 7)	intron (NM_001001491, intron 3 of 7)	9258.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	5.70463243470543	6.03713671235108	5.94095994741931	5.04948684667753	5.18635300220278	5.27875955792989	-1.39052309740116	4.53149621829002e-05	0.0014530124752658
Merged-chr9-50768350-4	chr9	50767839	50768839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361107)	promoter-TSS (NM_001361107)	101.0	NM_198675	382137.0	Mm.390169	NM_198675	ENSMUSG00000037845	Fdxacb1	D630004A14Rik	ferredoxin-fold anticodon binding domain containing 1	protein-coding	7.5875487747694	7.76026192436998	7.45675671241457	7.50046833213046	7.49694943410285	7.46132359844419	-0.184466183549491	0.420879292111025	0.789961725604022
Merged-chr19-42026355-4	chr19	42025855	42026855	+	936.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-9683.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	3.46494713495746	3.35038839593216	3.67627758891976	3.64248872745077	3.77662403235348	3.69493415420236	0.751075052236169	0.186060173489735	0.570564417916043
Merged-chr1-163930004-4	chr1	163929504	163930504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028776, exon 1 of 14)	5' UTR (NM_028776, exon 1 of 14)	239.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	8.00903203356505	8.43742407456929	7.65339297389038	8.03388316651439	7.96374620887982	7.82871954631699	-0.193378275403632	0.478661409604624	0.823838216369461
Merged-chr9-40803998-4	chr9	40803487	40804487	+	946.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031165, intron 6 of 8)	intron (NM_031165, intron 6 of 8)	2714.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.64576797416477	5.52820166107746	5.60676917266104	6.32164561415053	6.23951106083073	6.16072276402897	1.14494168021791	0.00011081576922581	0.00309213900930288
Merged-chr4-46372183-2	chr4	46371683	46372683	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17240.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	3.05779273149376	3.01229623768137	3.32633502575404	3.39548563799728	3.09536171085512	3.39721769516189	0.694496818793267	0.290733218153793	0.688551753592876
Merged-chr5-144223155-1	chr5	144222655	144223655	+	1000.0	f1_c57bl6.idr	intron (NM_027410, intron 1 of 24)	intron (NM_027410, intron 1 of 24)	460.0	NM_001356992	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	5.61232562249043	5.74013321157974	5.31257666105767	5.37166039569338	5.53043233099789	5.17073506990683	-0.386031262745876	0.280731325046581	0.678846264691369
Merged-chr12-108762938-2	chr12	108762438	108763438	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30373.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	3.96396885273272	4.01203584136049	4.25912558877266	4.08705907747311	4.05689973562595	4.52391347963642	0.426938938516909	0.396372219111143	0.773646867486102
Merged-chr4-95161453-4	chr4	95160954	95161954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-109232.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.76759319751959	7.63058482755159	7.47852141499242	7.8156115386155	7.92013833978895	7.78150201225544	0.297500383990676	0.186666174650637	0.571348871080751
Merged-chr6-123230326-2	chr6	123229826	123230826	+	645.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190320, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	483.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	6.94601811415115	6.9359838653154	6.71257421023032	7.00240159711643	6.84577497001902	6.7223054073499	-0.0161512441802494	0.949855419849006	0.988315240400101
Merged-chr5-108271229-1	chr5	108270729	108271729	+	733.0	f1_c57bl6.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	2332.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	4.05081015238126	4.15633435009902	4.40554013889811	4.86306140129413	4.53956437890901	4.59834065810452	1.21003277658008	0.00792324472087282	0.0855093834934352
Merged-chr3-97660164-2	chr3	97659664	97660664	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	intron (NM_182997, intron 2 of 7)	1952.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	2.93953077354438	3.12323455166853	3.24950344027121	2.89571874966899	2.95391559167823	3.15622821469662	-0.470578614085579	0.490424685286889	0.830053405840466
Merged-chr10-23851430-3	chr10	23850927	23851927	+	971.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011979)	promoter-TSS (NM_011979)	-35.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	3.01657191057572	2.98201110198727	3.25214151146963	4.07852696324878	4.01114991584657	3.7387769024289	3.88572493060957	2.62814899353095e-07	1.66806271131749e-05
Merged-chr5-136007999-3	chr5	136007479	136008479	+	935.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256096, intron 2 of 10)	ZP3AR|Satellite|Satellite	13179.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	3.68293575583355	3.05689987624075	3.18490245182271	2.76807545023038	2.62061019863886	2.88453918092956	-3.08718702018946	0.000269058600607649	0.00637768002184175
Merged-chr4-116807670-4	chr4	116807172	116808172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133250)	promoter-TSS (NM_133250)	-62.0	NM_133250	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	6.96290572163471	7.11776831850934	7.27849854488828	7.27562837776298	7.23785405290142	7.01506329231296	0.100756110877033	0.686114393153152	0.916596830431285
Merged-chr4-59043191-3	chr4	59042670	59043670	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8014.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	3.50085493481436	3.25653027658733	3.4792250340354	3.29901782714678	3.13842364385695	3.38845401510804	-0.562851233520091	0.363875616555991	0.749346919994824
Merged-chr7-92879609-3	chr7	92879053	92880053	+	947.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	4300.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.72208264395655	7.01441172088274	7.06147474591729	7.03394929596044	7.07061350742898	7.08119003777642	0.190632909554123	0.448561013808459	0.807277523678988
Merged-chr17-81015990-4	chr17	81015545	81016545	+	842.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49040.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	2.31653377722041	2.24677436900369	2.56152767644549	2.327425821702	2.1772221435496	2.51360517456438	-0.226455078399643	0.793667356662316	1
Merged-chr15-64061858-2	chr15	64061358	64062358	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1410.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.11754470502264	4.19390761794288	4.10870953393138	4.48870792394619	4.16672734398093	4.56759946417496	0.716449768163244	0.129829672502619	0.48201264454747
Merged-chr18-75469245-3	chr18	75468758	75469758	+	912.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	ORR1F|LTR|ERVL-MaLR	-45387.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.6754819428015	3.47796294339571	3.77354617769821	3.68752779030023	3.52722461675437	3.8422648050387	0.142318938963088	0.800536275007971	0.952565815851494
Merged-chr9-40264090-3	chr9	40263589	40264589	+	696.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5127.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.31417006365225	2.48895436883993	2.15940821709979	2.3717579068284	2.2732181613682	2.50284738281267	0.331396894936509	0.709098187312875	1
Merged-chr5-3488462-1	chr5	3487962	3488962	+	783.0	f0_balb.idr	intron (NM_009873, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	-55371.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.13379713173338	3.9914036268845	3.77958722301116	3.66510864296301	3.28907604846363	3.57508379749003	-1.60636863201193	0.00620320081449751	0.0714501568899098
Merged-chr15-95795930-2	chr15	95795430	95796430	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	5087.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.09263972340325	5.63352864608088	5.9207516301351	5.98362491496136	5.90024929092619	5.91033053012512	0.0636721733675768	0.84065236777642	0.962819298477451
Merged-chr11-115472900-2	chr11	115472400	115473400	+	942.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080934, exon 4 of 4)	exon (NM_001080934, exon 4 of 4)	-2767.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	5.37745771972832	5.26545631694411	5.90470987379678	5.60243588257013	5.32396606384021	5.8088418494612	0.0944256761874391	0.804464367750798	0.953651704501661
Merged-chr11-51615350-3	chr11	51614852	51615852	+	803.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	7.11515110950431	7.5106087498486	7.07325538612425	7.22321823182659	7.35062922919199	7.18257514553275	0.00182764047596224	0.994356933170664	0.998918571480046
Merged-chr3-98015989-4	chr3	98015485	98016485	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	2447.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.75645781404794	4.83873561594239	5.15214203742602	4.74439194116355	4.72864556522691	4.81056015899728	-0.353333276544764	0.378188866317961	0.760508946507441
Merged-chr9-44320871-4	chr9	44320356	44321356	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	-574.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	5.00725751420282	4.75714737189727	4.80000967262746	4.84116524409361	4.4624004813692	4.58241767404506	-0.523306460736968	0.211184110078622	0.603607015368989
Merged-chr9-90243134-4	chr9	90242647	90243647	+	810.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	27622.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.85735761261025	4.44616683990495	5.03391656848982	5.4298907392797	4.47931280670226	5.13110820486409	0.591170935218103	0.225246774512591	0.620063864646258
Merged-chr15-62071490-4	chr15	62071017	62072017	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	32260.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	2.92883505483332	3.20187959737581	3.41790915358718	2.99979840377324	3.07867319770796	3.53670614337571	0.112218780629172	0.874216668986868	0.970693381102502
Merged-chr12-40560031-2	chr12	40559531	40560531	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113978.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.6422300643844	6.6399428593352	6.49461709083042	6.69492011301261	6.62704120064062	6.57175317629065	0.0551143464511182	0.830387810470164	0.960291707438312
Merged-chr6-28341405-2	chr6	28340905	28341905	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-79804.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	2.42589984859376	2.62542912979151	2.66465527777574	2.33835293850706	2.43880764700599	2.42748733865879	-1.06750757119783	0.195150000412931	1
Merged-chr2-127337415-6	chr2	127336954	127337954	+	731.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010090, exon 3 of 4)	exon (NM_010090, exon 3 of 4)	-1185.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	3.46787357981761	3.13349683089572	3.30769431594629	3.44621151559991	3.20753962643494	3.43523178332557	0.204478086996105	0.745061947718044	0.936032341688524
Merged-chr11-4849582-4	chr11	4849072	4850072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361676)	promoter-TSS (NM_001361676)	-28.0	NM_010898	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	7.50909905410981	7.42389845265949	7.39124965494758	7.55870398298722	7.3719390570925	7.21746371178109	-0.0727295842318317	0.758333545359137	0.940121252394213
Merged-chr14-55591097-4	chr14	55590606	55591606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-5.0	NM_001029855	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	8.18809088563901	8.24603813482471	8.03614545736471	8.20490559910201	8.34416938681735	8.00183456344185	0.048184933616401	0.828654805597076	0.9598352930318
Merged-chr10-96343431-4	chr10	96342935	96343935	+	870.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	117228.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.32115960695592	4.14901987531157	4.28242209889295	4.81120961477689	4.65513972970988	4.53091991469728	1.07190321501711	0.0144485985874123	0.129383958433524
Merged-chr1-155070643-4	chr1	155070128	155071128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	12636.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.17071828022539	6.12319797557641	6.11862599871641	6.17859579595454	6.2278304841346	6.04466750616594	0.0354539615602168	0.899814876485153	0.976728292075907
Merged-chr17-53482837-1	chr17	53482337	53483337	+	959.0	f1_c57bl6.idr	intron (NM_025887, intron 1 of 5)	T-rich|Low_complexity|Low_complexity	3603.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	3.27530872391829	3.36523333727474	3.37757811109417	3.477305180947	3.24182368677895	3.801753264033	0.670349783089836	0.283557454453281	0.681376161050487
Merged-chr3-37769513-4	chr3	37769000	37770000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45140.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	6.37422401615121	6.09229436044808	5.83772242661822	5.95478400381345	6.01347944459957	5.9992574744591	-0.243894199161939	0.433398506298856	0.797815674529737
Merged-chr7-127778301-2	chr7	127777801	127778801	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178029, intron 2 of 18)	intron (NM_178029, intron 2 of 18)	912.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	4.08902715310214	3.78066007327556	3.89479451135403	4.06590220437861	3.69823065108866	4.28320218654352	0.297047854692865	0.586872177799811	0.875701838845342
Merged-chr8-41025795-4	chr8	41025314	41026314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	MTC|LTR|ERVL-MaLR	8346.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.26221496400646	5.54779796840287	5.51296753381142	6.15546188925767	6.2221112412572	6.03987860575881	1.26088678711587	5.91905896055537e-05	0.00181471281499591
Merged-chr18-75697641-4	chr18	75697134	75698134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201354)	promoter-TSS (NM_201354)	62.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	5.40190543919778	5.13824670177227	5.05852723428138	5.31262706323822	5.01820100355339	5.15876064929572	-0.102937450842973	0.781758595275162	0.946284883776141
Merged-chr13-23769219-4	chr13	23768730	23769730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5562.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	3.76130035080464	3.89483261099496	3.74232180725104	3.87210887581421	3.83903488680046	3.86427440046715	0.167316080253744	0.746115347342425	0.936284397599588
Merged-chr9-72532070-10	chr9	72531654	72532654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045735)	promoter-TSS (NR_045735)	-86.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	7.61705432822216	7.4355199046286	7.29005349583748	7.59487358751879	7.51628177652377	7.17461141097514	-0.0162602625521666	0.948722442225817	0.988169196639905
Merged-chr2-73453066-7	chr2	73452560	73453560	+	886.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	829.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.09554001283592	6.26817700689244	6.23099513074009	6.23079039830466	6.48617783291174	6.51339687681552	0.359536187057265	0.201811413675301	0.591445622326516
Merged-chr9-35212714-2	chr9	35212214	35213214	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026130, intron 3 of 13)	intron (NM_026130, intron 3 of 13)	1511.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	3.31281019095072	2.97155098809176	3.16602933243815	3.23673206392249	2.94784386330908	3.29465226850512	0.0224047038975052	0.973635310961858	0.994039095662068
Merged-chr8-108608967-1	chr8	108608467	108609467	+	632.5	f0_balb.idr	Intergenic	Intergenic	-24290.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.55387815176755	2.41784848738119	2.53698557072548	2.26347452074259	2.22071383373879	2.42125986236738	-1.37017955066495	0.109018697306498	1
Merged-chr11-5510929-1	chr11	5510429	5511429	+	1000.0	f1_balb.idr	Intergenic	RLTR28B|LTR|ERVL	-9712.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	5.1639508934305	4.84942453552731	5.13173585705102	5.49052522612789	5.66590793421605	6.00792776325049	1.32730573662765	0.000324410895907547	0.00743010785209885
Merged-chr16-50373821-2	chr16	50373321	50374321	+	860.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	58568.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	2.68290161312581	2.74348658311548	3.05325619894129	2.92813198655324	2.69139364831277	2.77186763210694	-0.154275435604325	0.835634158391997	0.961787999211487
Merged-chr9-99072718-4	chr9	99072232	99073232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 9 of 23)	intron (NM_029094, intron 9 of 23)	-37042.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	4.81997817737085	4.67268355420363	4.36691633605303	4.7755585447465	4.23177543727993	4.6542848070129	-0.172916134339862	0.712048920419695	0.924891945289204
Merged-chr2-120101567-1	chr2	120101067	120102067	+	553.0	f1_balb.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53008.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.56507896885023	5.43651756582004	5.66638054656194	5.55419761826796	5.81724349794692	5.77909584413455	0.317821571391783	0.326483136563083	0.71871363873492
Merged-chr13-36132249-5	chr13	36131839	36132839	+	935.339417	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	14696.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	4.64951267247683	4.60040856908712	4.34892267084758	4.51198739615684	4.17723320828634	4.62926505046062	-0.260586104752728	0.569631709893921	0.8688875602138
Merged-chr11-55005161-4	chr11	55004684	55005684	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001110211, exon 9 of 25)	exon (NM_001110211, exon 9 of 25)	28287.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	3.26487635130905	2.89721700711793	3.25221027595454	2.94524983180627	2.87431914910343	3.09979064210101	-0.79360211167373	0.254920715744387	0.652024436103169
Merged-chr10-59269026-4	chr10	59268521	59269521	+	749.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	47099.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	4.4641611933935	4.39779389350327	4.46342572790268	4.84580455002467	4.76503303084702	4.61690387374695	0.750547811398839	0.0703151656887304	0.347353562445953
Merged-chr13-100436873-2	chr13	100436373	100437373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 5 of 15)	intron (NM_008670, intron 5 of 15)	15991.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	3.41678137567329	3.33193046321074	3.57150540472106	3.83727710060984	3.83235705191574	4.07930371451612	1.66906321001567	0.00329658077947353	0.0451600088077763
Merged-chr17-57336513-2	chr17	57336013	57337013	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-22173.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.3714685218281	5.4495163679409	5.24996966643935	5.66195383632503	5.70429873494819	5.75131905404438	0.637278628486216	0.0502946883213592	0.285387372193375
Merged-chr16-45158770-4	chr16	45158306	45159306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356453)	promoter-TSS (NM_001356453)	-23.0	NM_001356366	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	7.69739577271156	8.1290098728003	7.61805344384589	7.66278090684087	7.79520327880793	7.67471681273108	-0.184237283495323	0.461841907377671	0.815107818354545
Merged-chr15-59745342-2	chr15	59744842	59745842	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49617.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.23663086165421	4.95274285318109	5.28985220053824	5.2356461772609	5.20377670464439	5.19511063295408	0.105125983913921	0.771650688809814	0.943614978016208
Merged-chr10-19562823-3	chr10	19562318	19563318	+	846.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29131.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.32298424212553	3.17925078400976	3.35242479683354	3.27878703354273	3.14316649232733	3.62817725542962	0.286253362685385	0.654284596386785	0.903731888516984
Merged-chr13-101879906-4	chr13	101879399	101880399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111682.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.91728160879457	3.75217864351107	3.69821072164432	4.17742583583699	3.9853798504417	3.53288185988842	0.422822480505189	0.462960703398992	0.815557314824562
Merged-chr14-73403556-3	chr14	73403056	73404056	+	677.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18267.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.25903512773956	4.62301521095896	4.70390435235732	4.35472927140097	4.34859204374777	4.53935552796517	-0.316885653346315	0.483905417522606	0.826584678003739
Merged-chr6-112739213-4	chr6	112738734	112739734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 16 of 21)	intron (NM_080448, intron 16 of 21)	-42564.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	6.33773317981346	6.25801363988021	6.09814513378611	6.31571349798224	6.44280854250491	6.32802872217681	0.206412540234182	0.456516532984275	0.811680471504093
Merged-chr6-127265280-2	chr6	127264780	127265780	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42687.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	2.997005272962	2.71684864571894	2.94534372713227	3.16470013304359	2.67445167054884	3.24739430550474	0.727562539596838	0.340053343473186	0.72967866276074
Merged-chr9-124275646-1	chr9	124275146	124276146	+	812.5	f0_c57.idr	Intergenic	RMER6A|LTR|ERVK	37048.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	5.46323216759768	5.5628367719206	5.52029730821562	6.04578727040815	6.17726054172302	5.6718638162105	0.866377116670075	0.00803391358528439	0.0863453734957819
Merged-chr14-70057453-1	chr14	70056953	70057953	+	1000.0	f0_c57.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19992.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	8.06485609431447	7.96111603312445	7.42087224680814	8.01427581439483	8.22426100919102	7.84189905932762	0.265137460467019	0.324987151631614	0.717872279937438
Merged-chr17-17450368-2	chr17	17449868	17450868	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	47682.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	4.91772115281582	5.01630166066036	5.0798039934434	4.35499918115848	4.39696529647653	4.80284636975627	-1.12839023882668	0.00738648790273642	0.0813090204274232
Merged-chr5-23850583-4	chr5	23850138	23851138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045040)	promoter-TSS (NR_045040)	41.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	5.94549404876709	6.26840085730779	5.87415701037813	6.73043162447578	6.91403015929734	6.84066347779117	1.26095080565961	1.25745576590486e-05	0.000486796015307108
Merged-chr9-64811975-1	chr9	64811475	64812475	+	1000.0	f0_balb.idr	intron (NM_001162917, intron 2 of 34)	CpG-15087	964.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	7.29481128906204	6.88542659953794	6.94948669899505	7.13402202844482	6.86689467992911	6.73356630644988	-0.204065220433192	0.459082378053661	0.813375481603532
Merged-chr1-131087066-4	chr1	131086574	131087574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	10769.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.46947522697102	7.23980865535291	6.87410684007858	7.23946543940732	7.22258885954709	6.93268366525386	-0.123368431251138	0.655264057314165	0.904177720420701
Merged-chr4-138327382-1	chr4	138326882	138327882	+	681.0	f0_c57.idr	Intergenic	RMER19B|LTR|ERVK	-1086.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	3.34544532158583	3.42361859621951	3.64944979444558	4.32437555064724	4.57082412514158	5.08438710029502	4.04509930038428	7.90952561993095e-10	8.84716883681065e-08
Merged-chr6-34955694-4	chr6	34955200	34956200	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 5 of 7)	intron (NM_001025573, intron 5 of 7)	22299.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	3.15322837807587	3.12613853989421	2.82364981782219	3.13423767188163	3.31205813684792	3.21429055483697	0.752264604996369	0.281632016422943	0.679734270520554
Merged-chr9-106821840-4	chr9	106821335	106822335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001015507)	promoter-TSS (NM_001015507)	-141.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	8.15976029700271	8.05348272279287	8.01252252357478	8.1406808185505	7.9029627905316	8.15233019960978	-0.017632448114685	0.935465596836162	0.985852245513165
Merged-chr7-89247029-2	chr7	89246529	89247529	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	RMER1B|Other|Other	91758.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.34049289888447	3.2544480016271	3.49745363374668	3.08961163361681	3.27953456502088	3.35621282179472	-0.472723827124724	0.450921839197411	0.808696965168079
Merged-chr11-107341957-2	chr11	107341457	107342457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B3A|SINE|B2	128763.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	7.47299399916627	7.40066358005694	7.11062256098886	7.41182296521251	7.69956933985225	7.20735907178642	0.178351813750561	0.498810774119763	0.834135868113764
Merged-chr8-125726841-5	chr8	125726462	125727462	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-7241.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	6.16610105090639	6.29950529601765	6.52393353352802	6.45364871357362	6.54714270932719	6.82721011358337	0.457749057635634	0.110072415811903	0.443363350300229
Merged-chr11-59392515-4	chr11	59392009	59393009	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16856.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	4.69461602381681	4.91428349857225	4.48596387806943	4.75058736884655	4.45186327765905	4.46380345161334	-0.373093877307755	0.393938883645193	0.772014404629083
Merged-chr11-79088506-1	chr11	79088006	79089006	+	1000.0	f0_c57.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28670.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	7.38616470991618	7.4661983763745	7.10241937333427	7.18156359788495	7.29609860429527	7.06705112009678	-0.216398974539733	0.384106978224444	0.765293063085998
Merged-chr1-91027126-4	chr1	91026631	91027631	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	-26313.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.39612278062962	5.58840012877076	5.5033898891981	5.69792452006897	5.92190752815028	5.75750075721581	0.563704350252319	0.078939966954696	0.371191535123417
Merged-chr7-99051093-2	chr7	99050593	99051593	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	90051.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.55519013357847	5.09788480877784	5.09123996278973	5.15623820487769	5.1863761531259	5.3526806876835	-0.0928398927211406	0.805614257625722	0.953956034266138
Merged-chr9-104263067-4	chr9	104262575	104263575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163026)	promoter-TSS (NM_001163026)	-145.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	7.47719101825879	7.7035930437662	7.31871708748505	7.51594915234792	7.75273705409073	7.55754374602517	0.145807031172642	0.548597862621369	0.859834070202846
Merged-chr1-131058806-2	chr1	131058306	131059306	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	38961.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	3.00049920487282	2.81614935418669	2.95439514122991	3.31188967287073	2.73544849087193	3.47375677227965	1.23199260188165	0.104714421274805	0.43183216362363
Merged-chr9-78488636-2	chr9	78488136	78489136	+	973.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6912.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	6.831792678204	7.06504149224645	6.78692367177123	7.01736251169393	7.35143443866392	6.78181048048018	0.272726235850172	0.330413642289933	0.721886788700559
Merged-chr9-101078743-2	chr9	101078243	101079243	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	3981.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	4.61352480536766	4.5579814488236	4.79771339016963	4.8741192686905	4.55768107699647	4.67170532263275	0.123738552800895	0.766459229641828	0.942467872936068
Merged-chr15-53196520-4	chr15	53196013	53197013	+	943.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	149670.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.87748574936598	3.63427692929382	3.57423949000378	3.39789318435407	3.24381541358291	3.47968127297348	-1.24886215016605	0.036031250882853	0.233417546642
Merged-chr14-21832238-4	chr14	21831716	21832716	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011695, intron 2 of 9)	intron (NM_011695, intron 2 of 9)	655.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	7.16051419796601	7.31433241896717	7.31623990706892	7.43057322060622	7.45040124674887	7.05191189470374	0.102423758658286	0.681534381226023	0.914722123895976
Merged-chr1-162624170-2	chr1	162623723	162624723	+	710.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14927.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	4.88503816575346	4.86651044299779	4.70162712565395	4.28250380680943	4.07534636300451	3.97059081389146	-1.81632127486061	8.73910645506946e-05	0.00253632218316505
Merged-chr5-148700414-4	chr5	148699928	148700928	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41412.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.4817744684864	3.35371907592089	4.11066613463088	3.82068510932919	3.73100717743611	4.65413109377319	1.24920836923253	0.222237023832791	0.617178368569484
Merged-chr11-69628490-4	chr11	69627989	69628989	+	888.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21B|LTR|ERVL	-4482.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	5.99650952489462	5.84101034476163	6.05783255879828	6.05395154629487	6.59053923893334	6.09646100857904	0.545221690744093	0.0879796550336721	0.393560084728874
Merged-chr6-140614892-4	chr6	140614398	140615398	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7765.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.99005860535449	3.72351039773142	3.77818577086996	4.14477876552531	3.99045578994562	4.09963821018935	0.720044028890826	0.159191948528146	0.531158781765317
Merged-chr5-100662772-2	chr5	100662272	100663272	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11484.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.02997614504139	4.71550329889156	4.82746241832271	5.18626603970985	5.17322878766837	4.93268003467989	0.523213447552635	0.176353839833064	0.556552010347782
Merged-chr5-147072042-3	chr5	147071535	147072535	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	4537.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	6.24137567839688	5.49812436465953	5.34233695789487	4.3747265746715	4.01439086287757	4.46355011723598	-3.38166030448694	3.68154473404528e-12	6.42209589581634e-10
Merged-chr9-94617350-4	chr9	94616865	94617865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52527.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.48437228394996	4.47345651820779	4.41720309076612	4.6543331565992	4.89715881027645	4.61569346961925	0.66817927890372	0.112132940161899	0.447327533080416
Merged-chr16-95825318-4	chr16	95824801	95825801	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73412.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.88385932401295	3.68870196369699	4.03916968915633	4.07970311644963	3.84757859739225	3.86519570479437	0.19871274597508	0.704741813503942	0.922514359670029
Merged-chr19-37209776-2	chr19	37209276	37210276	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027314, intron 1 of 5)	Lx8|LINE|L1	2231.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	3.75034845532159	3.37558353385386	3.32825788281506	3.95410434471784	3.52578731038832	3.63811400529192	0.733640376140111	0.236359256406921	0.632720263621021
Merged-chr1-165740636-2	chr1	165740136	165741136	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-23122.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	2.27443870842017	2.0942577433833	2.22036385096124	2.29620417619216	2.13278859059039	2.54993540994233	0.905574144939094	0.312793690886489	1
Merged-chr9-120868591-3	chr9	120868088	120869088	+	936.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46662.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.53289658635007	2.43102661914292	2.5171205013181	2.25226748709922	2.30081746030872	2.2679231998421	-1.49261568938896	0.082717587733885	1
Merged-chr9-97109817-2	chr9	97109317	97110317	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	1224.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	6.18190366178069	6.25699416870202	6.12963928853107	5.99610887113489	6.31475112660909	6.4251679926132	0.102134390806649	0.727828057327976	0.930264005071293
Merged-chr17-48346441-4	chr17	48345949	48346949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272078)	promoter-TSS (NM_001272078)	48.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	5.49078395285473	5.21953705755831	5.35095885542981	5.13492369424931	4.96863689200481	5.29230260937751	-0.470555387865873	0.1937701951116	0.581033530782477
Merged-chr8-10893866-2	chr8	10893366	10894366	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6056.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	2.11188396191366	2.0434232558446	2.40575879152079	2.2164095080941	1.86968114758405	2.02090122637359	-1.11608200560727	0.264024719246515	1
Merged-chr11-3182575-2	chr11	3182096	3183096	+	995.125	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	MTD|LTR|ERVL-MaLR	10867.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.85745319061689	6.19106894874829	6.50549229051774	4.57282230796068	4.26751386992091	6.8131245329991	-0.615135251524059	0.67620177418906	0.912421384593547
Merged-chr14-60250553-2	chr14	60250053	60251053	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362440, intron 1 of 14)	intron (NM_001362440, intron 1 of 14)	926.0	NM_001362440	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	5.15143238982119	5.25208047143627	4.85292027058275	5.39264629501575	5.19072100205178	5.11091094643102	0.267527635015948	0.47742524525271	0.823237639056184
Merged-chr18-43508306-2	chr18	43507806	43508806	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70020.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	2.70611001850141	2.6994647373308	2.98203576428896	2.78390603352875	2.83215765711119	2.75681269882885	-0.0138175402728481	0.984882106506284	0.99681397263386
Merged-chr3-108070507-4	chr3	108070002	108071002	+	843.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14900.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	2.7210030024041	2.86038811877977	2.94324982709445	2.70568961373417	2.74761969479924	2.89864779525801	-0.299758692984656	0.677599465771425	0.913034336505842
Merged-chr1-180904900-4	chr1	180904410	180905410	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133705, intron 2 of 6)	intron (NM_133705, intron 2 of 6)	636.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	5.02261915784579	4.98134049665365	5.25264807949948	5.22123715408291	5.18203887110376	5.0522028587954	0.161772289450542	0.657696848326066	0.904859102731141
Merged-chr4-145037795-4	chr4	145037283	145038283	+	877.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144646.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.75160349912139	5.94432572676758	5.9332102415776	5.46531607064515	5.71438785914927	5.64472518529568	-0.474313661916745	0.134679610712023	0.490541521038566
Merged-chr1-135283526-4	chr1	135283044	135284044	+	956.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	CpG	540.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	8.35113502399191	8.57525906397645	8.61337424001558	8.35217676448648	8.43453174536111	8.60051284989061	-0.0730939109629729	0.733725792316173	0.9322174913659
Merged-chr5-115500590-4	chr5	115500081	115501081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-6095.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.2974249654261	6.97881826832091	6.87126962587279	7.5599077841762	8.07951687874875	7.69619720353314	1.07824330858176	8.50363416497654e-05	0.0024783551369505
Merged-chr14-66232722-4	chr14	66232207	66233207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18883.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.4039104731941	6.16714381862178	6.16947041756788	6.60013392252427	6.34517142732806	6.77551197498218	0.521560444491602	0.0732563102531649	0.355619372885081
Merged-chr2-167919444-2	chr2	167918944	167919944	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12883.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.25553910461127	3.11455637667963	3.24453677850843	3.12245238905072	2.72835559149344	3.20431758281004	-0.774752267014208	0.280498089429317	0.678459974643525
Merged-chr8-117281859-4	chr8	117281310	117282310	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	24791.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.66278860289867	5.20411029408028	5.47086561439542	5.27034486330696	5.6126778704233	5.58956974144849	0.0798124076519331	0.824730949478278	0.958596193929081
Merged-chr8-70282916-4	chr8	70282410	70283410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011984)	promoter-TSS (NM_011984)	-89.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	5.7089743026613	5.25564644457753	5.63262922303937	5.45831929846882	4.85632654263056	5.0106847434022	-0.810351983974305	0.0428112011148688	0.259411187180746
Merged-chr5-77310082-4	chr5	77309592	77310592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-6.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	5.60142209384072	5.86222928115803	6.0691718543012	5.59505324091393	5.96004971819669	5.76030493052744	-0.110695677410708	0.740572895258814	0.934580867046263
Merged-chr1-125459301-4	chr1	125458776	125459776	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-23549.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.4610008301373	6.34780840275718	6.21852068785247	6.49061140776311	6.73228201207118	6.27923832228451	0.283848854797931	0.32541386515062	0.718147594192999
Merged-chr14-40921418-4	chr14	40920938	40921938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	26771.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.72240597450404	5.38243944602481	5.65471214008234	5.48969060218587	5.10759054588114	5.41008170711093	-0.48987296181293	0.16858479655681	0.545184755223438
Merged-chr11-77446060-2	chr11	77445560	77446560	+	794.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17853.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.52138012296576	4.34257499139088	4.10777095437032	4.45937799921467	4.01508086682789	4.17830240162583	-0.302506719399318	0.5400028633503	0.856245552500013
Merged-chr2-154990558-3	chr2	154990003	154991003	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23067.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	5.85944998472083	6.03705192352805	5.41155095657669	4.09288887833217	3.78845249614738	4.22299004542732	-4.67853135158852	1.81785901789534e-17	7.91939335921653e-15
Merged-chr17-86964211-1	chr17	86963711	86964711	+	685.166687	f0_balb.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	1100.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	6.39369475337973	6.08193063557997	6.13978558057776	6.77264443814005	6.43850136977861	6.22292519482415	0.472309459448889	0.122530397898416	0.468306892119399
Merged-chr3-35732441-4	chr3	35731921	35732921	+	924.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-21642.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	4.03925718053118	4.05111959788556	3.94101649584288	4.21488672028069	4.13426781256492	4.2496355767212	0.518240519932162	0.276914013558396	0.674259246778657
Merged-chr14-14600057-5	chr14	14599459	14600459	+	994.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103066.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	5.94673690311723	5.99923116676804	6.06573021191258	5.57235829150456	5.91086954465614	6.10494524220661	-0.221817341035411	0.485455148754072	0.827469518549836
Merged-chr13-112337321-4	chr13	112336824	112337824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	48806.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.270185960873	3.76026918266198	3.73591085017152	3.55955084079926	3.7969275883558	3.80733516520781	-0.712936170882147	0.213529800668484	0.60656109702387
Merged-chr19-3914717-4	chr19	3914229	3915229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1955.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	7.02970272354057	7.00584753140306	6.96304176780598	7.15329539443062	7.0384218979837	6.89232572126024	0.0541549474052014	0.823720411790938	0.958451755471188
Merged-chr17-65951136-4	chr17	65950623	65951623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023053)	promoter-TSS (NM_023053)	64.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	4.53581541922297	4.35804847217829	3.98009378139686	4.5629112911125	4.05491902505722	3.94115910679516	-0.259127039546911	0.633006065413808	0.895817001600499
Merged-chr3-108609094-4	chr3	108608579	108609579	+	917.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358055, intron 1 of 14)	Lx7|LINE|L1	17346.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	4.10142479330313	3.75003102289002	3.75032062024303	3.94482360982641	3.89932734333722	3.59390418880151	-0.170920782372339	0.759130172542832	0.940311236380535
Merged-chr12-85487050-4	chr12	85486653	85487653	+	879.131226	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13263.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.51804816733464	6.53811486641655	6.722700159011	6.83739443017633	6.87550838207761	6.85591347141296	0.421280161800828	0.0951416853773766	0.411148363215922
Merged-chr3-109249035-4	chr3	109248497	109249497	+	928.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-91686.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.4436850969328	3.24395385496317	3.60058537577289	3.2290793021559	3.12386157170125	3.5706281057868	-0.460744148929177	0.473299016596183	0.82085565563512
Merged-chr11-58847130-4	chr11	58846630	58847630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6014.0	NM_146537	258530.0	Mm.377556	NM_146537	ENSMUSG00000094805	Olfr311	MOR222-1	olfactory receptor 311	protein-coding	4.80851583809312	4.88060711117597	4.93481040262622	4.59809073041424	4.35722246686915	4.49637369533303	-0.930904615054991	0.0239188214508749	0.181773430932907
Merged-chr1-165958348-4	chr1	165957839	165958839	+	723.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198932, intron 1 of 15)	intron (NM_198932, intron 1 of 15)	-23391.0	NM_198933	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	3.26459562496112	3.35852499395697	3.27896285828314	3.56830071945933	3.54717380857799	3.67916406275174	1.10558058882288	0.0606850960242866	0.319101837203376
Merged-chr7-12897778-4	chr7	12897300	12898300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001447)	promoter-TSS (NM_001001447)	-9.0	NM_001290438	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	6.38013249668636	6.32547939094008	5.71501177039517	5.99815682353899	6.20840518145784	5.83482265418805	-0.262506728552692	0.440281375786858	0.80173308886134
Merged-chr3-106553583-4	chr3	106553085	106554085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-5783.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	7.7012837502532	7.69821025800474	7.69359118845788	7.5416663876484	7.60319754213517	7.57468771544056	-0.179440142405792	0.404695628614251	0.779791650050306
Merged-chr9-118673867-2	chr9	118673369	118674369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RSINE1|SINE|B4	-37823.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.87145925305644	7.76098351577692	7.59386348399017	7.82582938101925	7.82391319460574	7.43191463174082	-0.0529043958286563	0.82785926813226	0.959554716425434
Merged-chr9-57647574-2	chr9	57647074	57648074	+	824.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	MIRb|SINE|MIR	-1921.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	6.85538107143331	6.85946785133738	6.96663526956176	7.0211429989927	6.94724566398165	6.83941897836929	0.0778815679154515	0.750025513679648	0.937478909261018
Merged-chr19-53330269-4	chr19	53329782	53330782	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008543)	promoter-TSS (NM_001008543)	-126.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.30521420453641	6.27932458098771	6.76703997775813	6.13137746187173	6.06513711282851	6.22441623253128	-0.533819429669107	0.0770039768739474	0.365775057391982
Merged-chr5-139283902-2	chr5	139283402	139284402	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	30405.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	2.62647963292167	2.64286186793851	2.76873087115059	2.49129460133822	2.58882302917004	2.53302311424779	-0.793147152193199	0.305282179455266	1
Merged-chr16-76002492-4	chr16	76001987	76002987	+	840.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155447, intron 2 of 3)	intron (NR_155447, intron 2 of 3)	1703.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	3.02463456970923	3.10801522374595	3.58365791402083	3.16247774000137	3.04492891500007	3.40539715618999	-0.19308785795518	0.778928030877843	0.945562264368846
Merged-chr10-79554422-4	chr10	79553922	79554922	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316699, intron 1 of 13)	intron (NM_001316699, intron 1 of 13)	706.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	4.19438391071723	3.72812943989692	4.13576754897686	4.18443253669678	3.95075036501365	4.41545194235694	0.441523518325294	0.404475936303462	0.779643108504875
Merged-chr14-14686316-4	chr14	14685837	14686837	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16688.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.93855229790301	4.12040098780342	4.29604918266624	4.0052879637102	3.73440344896241	4.05614452669272	-0.560910620335053	0.275967773766387	0.673355880502019
Merged-chr13-107762940-4	chr13	107762450	107763450	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75553.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	5.15332794301531	4.94371427598364	5.15058946183893	5.30993125881445	5.17461333414859	4.88864443485514	0.129956861560357	0.731078424157292	0.931307266655708
Merged-chr8-27023763-4	chr8	27023274	27024274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-25.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	7.90020023915238	8.07762182563015	7.83863396638815	7.91391397129902	8.20476938535301	7.65243691955867	0.0108169915704593	0.965388235523106	0.991924431372486
Merged-chr5-129785656-1	chr5	129785156	129786156	+	692.5	f1_balb.idr	intron (NM_133900, intron 1 of 7)	B3|SINE|B2	1597.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	3.63612989252937	3.88230790469443	3.66294818075937	3.6165897008502	3.85539481546463	3.67975604451074	-0.029401611004767	0.957515360423705	0.98996830630481
Merged-chr9-95682027-4	chr9	95681541	95682541	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 5 of 8)	MTB_Mm|LTR|ERVL-MaLR	44413.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	7.76271122261906	8.02913396551642	7.97969809481588	8.42681849761417	8.9792763332519	8.20765547997885	0.924295068765151	0.000708324863789167	0.0137938411017294
Merged-chr15-12232590-2	chr15	12232090	12233090	+	759.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 2 of 15)	intron (NM_001356498, intron 2 of 15)	27562.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	3.45163641441781	3.74552360636732	3.66799773920205	3.42404648451086	3.03819155902802	3.41982634946096	-1.25381364018737	0.0508324589812277	0.287175664358967
Merged-chr4-124936994-4	chr4	124936506	124937506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177573)	promoter-TSS (NM_177573)	-42.0	NM_177573	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	4.84720347313749	5.06700093796111	5.0648747239139	4.91760333282594	5.10789284220718	5.06110952146894	0.0844547888697796	0.82211438819115	0.958041123079214
Merged-chr8-83738323-4	chr8	83737823	83738823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	2988.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.50257568407011	7.4313521875727	7.16276539340703	7.62425578312568	7.97842279956972	7.48876313279543	0.49880294093949	0.0548513855773181	0.300881672563616
Merged-chr11-23846113-4	chr11	23845587	23846587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49183.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	4.17418895514197	3.97193175817911	4.11652003733865	3.89240889716328	4.07590003864757	3.83882302518534	-0.417607114860233	0.408122150493572	0.781926100186554
Merged-chr11-121547473-2	chr11	121546973	121547973	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 14 of 38)	intron (NM_029878, intron 14 of 38)	-28131.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	2.72430995109872	2.77935002236919	2.7671423946565	3.01347875278104	2.60818707952602	3.0215631723955	0.669897015805838	0.372319448473063	0.756139355546515
Merged-chr9-50548063-1	chr9	50547563	50548563	+	656.0	f1_balb.idr	intron (NM_001359610, intron 2 of 10)	MER34|LTR|ERV1	5599.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	3.30759704569296	2.94652490151953	3.04511632718688	3.13885252194767	2.80411430157109	3.23422875878731	-0.187935910793096	0.792378562687803	0.949950082761242
Merged-chr7-25709002-2	chr7	25708502	25709502	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	10051.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.76475419276342	5.86970083556984	6.26395718165356	5.78003129652454	5.50670722233795	5.76872041647216	-0.517605529946811	0.1215189883538	0.466344042784002
Merged-chr7-55851491-2	chr7	55850991	55851991	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	Lx8|LINE|L1	9420.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.790728144871	4.4593366165058	4.76204778777609	4.9608779340207	4.87677116884531	5.373329178302	0.893116105427675	0.0339472456617977	0.225415562766488
Merged-chr10-87831765-3	chr10	87831265	87832265	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-26500.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.66144463427815	7.76223692590178	7.59214372994512	7.75578419503331	8.42775577504224	7.6093753241958	0.456504771357226	0.114244118532996	0.451407710729328
Merged-chr8-104341420-4	chr8	104340915	104341915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	821.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	7.61128933461936	8.08372724158965	7.83977925747906	7.3241823041586	7.71122641282858	7.68516384345823	-0.396743804944037	0.125215153992671	0.47354314333656
Merged-chr10-34152093-1	chr10	34151593	34152593	+	625.0	f0_balb.idr	3' UTR (NM_172508, exon 6 of 6)	3' UTR (NM_172508, exon 6 of 6)	-24121.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	2.60008832521168	2.86477256108466	2.92039184715194	2.78600806692585	2.90277413198787	3.04967194703543	0.565334735400104	0.443093840131634	0.80359529750813
Merged-chr1-120120565-1	chr1	120120065	120121065	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	354.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	5.66424237627427	6.22660686547446	5.88269530061738	5.68565987183672	5.98083144144493	6.12326870267498	-0.0216940463974407	0.949301775205045	0.988171665869286
Merged-chr1-34835824-4	chr1	34835315	34836315	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	7235.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.16378509145669	5.3797544345589	5.16689903965555	5.41151759412776	5.42278547233629	5.72129024276584	0.529026621337728	0.132171868656183	0.486197270886281
Merged-chr9-57261627-4	chr9	57261114	57262114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	CpG	985.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	6.53953887113447	6.56707086025037	6.45993163098469	6.67826360688247	6.34435230782755	6.05415497164933	-0.214019641548263	0.473690926540807	0.82103020564679
Merged-chr18-37935576-4	chr18	37935086	37936086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305981)	promoter-TSS (NM_001305981)	-110.0	NM_001305980	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	6.17594619962891	6.79500409251584	6.48230882327142	6.39322523618622	6.58101100800467	6.54169573826571	-0.0090557275833958	0.976148647847761	0.994580078491863
Merged-chr1-134094028-4	chr1	134093529	134094529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14874.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.660324144683	8.53322227317402	8.42451452846442	8.47771787445713	8.87484746503144	8.5568830930487	0.148862336415125	0.508926955363456	0.8401308223764
Merged-chr15-103215319-4	chr15	103214811	103215811	+	878.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110216)	promoter-TSS (NM_001110216)	41.0	NM_007626	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	3.47475702615219	3.3121595454542	3.07024903265345	3.45392374176212	3.37412542054629	3.38933074534261	0.396180941183205	0.534203750302185	0.85297101733083
Merged-chr9-40801130-7	chr9	40800627	40801627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031165)	promoter-TSS (NM_031165)	-146.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.45332201977962	7.0872467133618	6.92638295054169	7.2650351471972	7.24061136190701	7.09473767327391	0.0319469631856796	0.904171289347438	0.978052728746017
Merged-chr2-91194879-4	chr2	91194384	91195384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013839, exon 1 of 10)	5' UTR (NM_013839, exon 1 of 10)	151.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	7.19254429261138	6.959409768878	7.13537025306396	7.39052196314085	7.23488800479489	7.29944530159072	0.315861422911323	0.18629921994525	0.570803258887202
Merged-chr3-51378575-2	chr3	51378075	51379075	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17972.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	4.02589184942376	3.9268684510457	3.74701083512123	4.08300281795698	4.08841595376155	3.58352302132483	0.115644736782506	0.836904223882557	0.962002950199567
Merged-chr11-75165917-2	chr11	75165417	75166417	+	932.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2235.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.29185166400102	4.40022440904963	4.48601163381673	4.32300181802828	4.32322822398574	4.38511200981247	-0.127035302056636	0.773260116323413	0.944031747154154
Merged-chr5-105800138-2	chr5	105799696	105800696	+	735.0	f0_balb.idr|f1_balb.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	-76372.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.17155166145104	2.8155173184543	2.93106271000759	2.69595883903845	2.57950689214678	3.00404494182237	-1.08938380015474	0.159958546917307	0.532501868349568
Merged-chr2-140066796-4	chr2	140066287	140067287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110350)	promoter-TSS (NR_110350)	18.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	8.09009740832595	8.32497619950067	7.68889189873555	8.2232618178903	8.02015258952531	7.87893023953489	-0.0260609384791446	0.920304504429474	0.982323255407855
Merged-chr10-44428246-6	chr10	44427781	44428781	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30467.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.68661299229576	3.7297859097777	3.88568513792582	3.9762643360236	4.17560030577353	3.85353231028419	0.790994131402399	0.129219579255168	0.480785320364958
Merged-chr18-10181490-4	chr18	10180986	10181986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009071, exon 1 of 33)	5' UTR (NM_009071, exon 1 of 33)	306.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	8.21727305235474	8.65864948468935	8.31221313007636	8.2245616693389	8.27129754176303	8.39146422963515	-0.165410560468068	0.47343872927942	0.82090428702971
Merged-chr11-98907641-4	chr11	98907118	98908118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011799)	promoter-TSS (NM_011799)	-271.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	3.99375521612189	3.85267761804617	3.63855891892882	3.68386224796243	3.54927494576034	3.86679005504431	-0.475281495410762	0.391171285849641	0.770206739374576
Merged-chr1-172476114-2	chr1	172475594	172476594	+	592.5	f0_balb.idr|f0_c57.idr	intron (NM_029612, intron 1 of 3)	intron (NM_029612, intron 1 of 3)	734.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.47824822115658	4.37073322562157	4.76083483567585	4.59070598418195	5.05304843275868	4.45734315407234	0.479887597773015	0.298328862958322	0.69500092474273
Merged-chr18-55146887-4	chr18	55146382	55147382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154291.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.02417859633055	4.09773813840744	4.1220894642299	4.00859791620939	3.87973661970893	4.36063928361751	0.0178054821065489	0.971807820544643	0.993783614343214
Merged-chr12-44355275-3	chr12	44354765	44355765	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146031, intron 1 of 27)	intron (NM_001146031, intron 1 of 27)	26380.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	4.32813758643206	4.75064886070426	4.15223395632807	3.51155182686209	3.31753534370934	3.8702041032277	-2.86206856705278	4.06625746557029e-06	0.000184686217901295
Merged-chr13-59823150-4	chr13	59822635	59823635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153538)	promoter-TSS (NM_153538)	12.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	8.61836633691934	8.73065425606064	8.50604709329408	8.57957180271988	8.66928754343189	8.62363855716258	0.000604919812742132	0.997609438153531	0.99951942247262
Merged-chr2-6717165-4	chr2	6716674	6717674	+	893.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4488.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.38089169481608	5.30944043338981	5.65963827818677	5.67308744370734	5.69175578051159	5.40998729466665	0.302638662624042	0.374568695508684	0.758106266771134
Merged-chr14-20082843-4	chr14	20082349	20083349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	CpG	323.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	8.54283895907644	8.85620674853251	8.47256645412723	8.47052780872122	8.61840177751995	8.4140550351855	-0.183298205184035	0.411669716620917	0.784017205335022
Merged-chr8-114438432-4	chr8	114437918	114438918	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	2.58551476629713	2.69968138677916	2.85789632984895	2.5155255041948	2.5029620364529	2.69367721725518	-0.825256515046759	0.287421683178077	1
Merged-chr9-21153328-2	chr9	21152828	21153828	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3422.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.35410692628552	3.47065838679863	3.41584109654026	3.49378009016413	3.47178927756008	3.19045261765989	-0.0585264643028919	0.923656900387591	0.982727549942016
Merged-chr6-124508578-4	chr6	124508090	124509090	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181344, exon 6 of 6)	exon (NM_181344, exon 6 of 6)	-4031.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	3.9539853217317	4.17884490218467	4.08021915686458	4.01356065013093	3.94524143062779	4.36534115016993	0.100392078878171	0.841694947431709	0.962988975342446
Merged-chr17-65785374-2	chr17	65784874	65785874	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	2019.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	5.34556630353269	5.19432698126773	5.36647068412268	5.42349950524498	5.38963981775332	5.23965172813363	0.116496128625094	0.734124991477662	0.932325051544019
Merged-chr6-87724502-3	chr6	87724067	87725067	+	693.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6302.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.46431088790614	4.37078520614308	4.06315871860306	4.09002705181645	4.01676623671617	4.22958634405796	-0.584607968238973	0.225675505872439	0.620676402041606
Merged-chr15-58882496-4	chr15	58882006	58883006	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-6723.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	4.441714970019	4.17108922819149	4.49328116365772	4.55268846545113	4.17269687875003	4.43552354849194	0.0521149311902284	0.911033871424174	0.980017061055921
Merged-chr4-139259066-3	chr4	139258576	139259576	+	902.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 3 of 9)	intron (NM_001037761, intron 3 of 9)	51632.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.4057756397874	3.34913875673276	3.66440525187442	3.72115686219569	3.33324031070173	3.63260266124862	0.343455042134087	0.568170318169503	0.868528648409077
Merged-chr2-33432336-3	chr2	33431826	33432826	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1002.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	4.77716903839243	4.98253251006167	5.22130174910789	5.06366771407081	5.27347392552364	5.05573883139888	0.309968423486311	0.420613651324801	0.789800880993226
Merged-chr6-54866946-4	chr6	54866452	54867452	+	821.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50036.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.29998079386413	4.60345671097039	4.09022768546172	4.31863043758565	3.72650590527162	4.00641498276349	-0.870950396444477	0.106596966106259	0.435916169724877
Merged-chr6-91516528-2	chr6	91516028	91517028	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009531)	promoter-TSS (NM_009531)	493.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	5.89961791692819	6.12192699299191	5.90143287943585	6.03733417051189	6.05766320024105	5.78300576162504	-0.0159353390845936	0.958264890376515	0.990000537228272
Merged-chr5-121718646-4	chr5	121718161	121719161	+	891.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	7052.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	3.4282718957957	3.37357296519827	3.76799400254607	3.56170179668099	3.78811306141945	3.63604893000923	0.505956500325441	0.385657332208574	0.766634222810718
Merged-chr16-81434469-3	chr16	81433994	81434994	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 2 of 17)	intron (NM_001113208, intron 2 of 17)	233797.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	3.40001420413886	3.39610784072223	3.35258294374862	3.6800773511225	3.37096088305118	3.59081197281344	0.611606713256572	0.300470082562703	0.697311691851564
Merged-chr11-83115334-2	chr11	83114834	83115834	+	819.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1486.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	3.03757352447253	2.89518929243539	3.14164009693789	3.15862983374432	2.87228644791337	3.21319378920894	0.26725061045737	0.696681635574522	0.919581992279881
Merged-chr11-110166082-4	chr11	110165591	110166591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	2062.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	5.60983867323075	5.91460891001673	5.53606759649928	5.56961748842893	5.67571920074299	5.9562950292479	0.0532491393151688	0.874498535388597	0.970754540400126
Merged-chr5-43854318-4	chr5	43853801	43854801	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14508.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.11550846391688	7.43631870571013	7.22475881960008	6.72320143823006	6.74672601028785	6.72268443844295	-0.819551849647783	0.00106545066918799	0.0189189114984623
Merged-chr5-99458999-2	chr5	99458499	99459499	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206072.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.337085990417	5.39111285748897	5.70315954013376	4.98068802955711	5.27957824548025	4.98917268883005	-0.749759751022577	0.0451967559938961	0.26825962427706
Merged-chr19-11999470-4	chr19	11998955	11999955	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33611.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	3.21793920434389	2.94926756622422	2.85521842295988	2.90479571991855	2.96649076519656	3.11191057702119	-0.125697034980735	0.857886438784552	0.966785186918462
Merged-chr7-45238995-4	chr7	45238512	45239512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007645)	promoter-TSS (NM_007645)	103.0	NM_001290802	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	6.71069087947437	6.7222215000968	6.74769100183822	6.86349027996932	6.82538234146332	6.62725848221424	0.0889197033963007	0.725042094607669	0.929501619414759
Merged-chr17-56183496-1	chr17	56182996	56183996	+	729.0	f0_balb.idr	intron (NM_080837, intron 1 of 5)	intron (NM_080837, intron 1 of 5)	424.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	7.75116661918095	8.02492783499699	7.34897187338328	7.52644991576932	7.53293106845766	6.88410221926258	-0.562075289400926	0.0666527816233636	0.337350648011973
Merged-chr2-150749002-4	chr2	150748481	150749481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-100.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	7.62961478647334	7.85371042228558	7.65125184323789	7.61903855014066	7.79173530563148	7.62377875491796	-0.0487976030295396	0.82970230197759	0.960134151531511
Merged-chr6-89262527-4	chr6	89262052	89263052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23173.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.37871131017576	4.36478102453479	4.06344104042584	3.9978446443266	3.71367749939506	3.87477854196379	-1.24685764724646	0.0144283415058241	0.129272471198085
Merged-chr8-117157236-3	chr8	117156731	117157731	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-904.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	6.25775069322057	6.41501277291948	6.438254765909	6.24773530334234	6.22314219037548	6.49724361970584	-0.0833061245303607	0.765532878935048	0.942148336413151
Merged-chr5-148311039-4	chr5	148310562	148311562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359511, intron 6 of 6)	MuRRS-int|LTR|ERV1	45845.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	5.28125274470142	5.0724696555129	5.14727806390878	5.41770520464501	5.2576057794302	5.48869406029703	0.426841826205359	0.22507138140338	0.619959596921757
Merged-chr14-73402284-4	chr14	73401904	73402904	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-17115.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.3284748971421	6.54138437943685	6.55097770662434	6.66690008014209	6.62477457731537	6.50489161641517	0.208643091552193	0.432678946727711	0.797464887239608
Merged-chr5-121593264-2	chr5	121592764	121593764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	CpG	560.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	7.15252687542564	7.42843058851344	6.99260721556393	7.21318977297762	7.29324667522267	6.93505848149559	-0.0714929256046322	0.787546989854084	0.94877064431094
Merged-chr14-55762561-6	chr14	55761972	55762972	+	943.263916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020490, exon 2 of 2)	exon (NM_020490, exon 2 of 2)	1044.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	5.99667210084268	5.97575309070076	5.93489808501691	5.90837620625191	5.74338685005266	6.06341860449703	-0.124661419902043	0.679093896728475	0.913598139999724
Merged-chr11-114994644-1	chr11	114994144	114995144	+	697.0	f1_balb.idr	Intergenic	RLTR13B1|LTR|ERVK	-4758.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	5.25921668584998	4.74899772613718	5.41783255070518	4.86678818542998	4.80162028159083	4.99145386337309	-0.599032470369327	0.149020684506556	0.515173589115523
Merged-chr10-121364999-4	chr10	121364472	121365472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029364)	promoter-TSS (NM_029364)	-118.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	8.65401215651283	8.95817182186039	8.45674119609476	8.34843614475737	8.56701599622408	8.40259436849293	-0.369232998024672	0.113298321320609	0.449643790023599
Merged-chr18-23887529-3	chr18	23887044	23888044	+	824.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	L2c|LINE|L2	-67144.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.48022658641175	6.24828456854376	6.17732378166747	5.08203672750612	5.15843335465556	5.26859558788662	-2.11047315182816	9.68844756848359e-11	1.29815836598773e-08
Merged-chr5-99387065-3	chr5	99386565	99387565	+	839.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-134138.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.47664801355442	4.38635999445427	4.62442160021832	4.18151567215618	4.49302744631035	4.26969371947958	-0.415973573050545	0.361323103800861	0.747252891113536
Merged-chr13-65226438-4	chr13	65225955	65226955	+	870.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-20739.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	1.74710593354456	1.81335412684961	1.77358252677947	2.14932527545144	1.88648258728539	2.19842422438919	2.80584818899648	0.0127517351600476	1
Merged-chr11-54028207-4	chr11	54027684	54028684	+	990.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-80.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	6.21594281222737	6.46263860627018	6.31811082422489	5.70787330685399	5.86837676679475	5.56548081788305	-1.04343811194461	0.00067391389218409	0.0133036837819345
Merged-chr5-135912627-4	chr5	135912137	135913137	+	812.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	B1_Mur2|SINE|Alu	22004.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	7.05362308970079	6.79856537525209	6.91679548367081	6.78551891538921	6.62524942186073	6.51046757825766	-0.433503469415446	0.0970871222351279	0.415492736045904
Merged-chr4-59802803-2	chr4	59802303	59803303	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-2847.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.65371215592387	3.70112568268679	3.79691736202419	3.46924393111031	3.50741907554119	3.66601465233839	-0.595192653203401	0.283543147740093	0.681376161050487
Merged-chr9-21600300-2	chr9	21599800	21600800	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7469.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	3.30586524311475	3.3405860512316	3.62377371878776	3.34539390967801	3.47869541744026	3.6925553221649	0.314338142033942	0.602420762620218	0.882349532183277
Merged-chr11-104367117-4	chr11	104366587	104367587	+	935.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	ID_B1|SINE|B4	75204.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	6.08113382311779	6.10481182739713	6.09052054163785	5.72909199085328	5.99379047279975	5.65509621315138	-0.483737352118239	0.115023736346973	0.452781486136765
Merged-chr5-33378533-4	chr5	33378018	33379018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-178.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	7.57738652111304	7.95305331834558	7.77203969219907	7.67749306549587	7.93797190855907	7.72451498548375	0.0163613065212383	0.945477778660872	0.987909250703712
Merged-chr7-4065623-2	chr7	4065123	4066123	+	909.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	3.54825474862502	3.43336662069098	3.62038814724685	3.56396037278164	3.6659046648137	3.74091319611424	0.441341519065174	0.428961023346394	0.795570481157701
Merged-chr11-46830548-4	chr11	46830043	46831043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	MLTR14|LTR|ERV1	19744.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.36103689104397	6.3863874845011	6.54409303892354	6.32794803722107	6.38973097284921	6.14038436723059	-0.209889499745093	0.448513755233019	0.80725470300829
Merged-chr17-33943546-5	chr17	33943033	33944033	+	948.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020603, intron 7 of 14)	intron (NM_020603, intron 7 of 14)	2810.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	5.66384150361289	5.58592472465275	5.48112492852267	5.47294615798322	5.45904304488948	5.60076046331347	-0.147538289889614	0.648766258691875	0.901933817637397
Merged-chr6-125481903-4	chr6	125481348	125482348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12912.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.28872025403914	5.05668696851574	5.16797317804151	5.90159032188145	5.90694824968841	5.37129380920505	1.12252872033752	0.001808424958964	0.0285857568361467
Merged-chr2-120096409-3	chr2	120095907	120096907	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	58168.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.98986322991993	3.88951238898528	3.86529755597114	3.8109076641765	3.56645293530232	3.61555099763248	-0.821242767076962	0.126197369656083	0.475052622314112
Merged-chr10-88420843-4	chr10	88420351	88421351	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-38736.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	5.25976975484609	4.99307832276589	4.77483593878492	5.4381223472739	5.65972685272903	4.92941166291497	0.718389742806687	0.0873809072847902	0.391935234399915
Merged-chr8-11451635-4	chr8	11451169	11452169	+	871.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26260.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.65759001427054	6.40355776195834	6.52154676455555	6.50194941656873	6.33200787148617	6.12112727619763	-0.32067181235228	0.258355460459506	0.655863598069212
Merged-chr5-52476418-4	chr5	52475926	52476926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4883.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	3.76241169369166	3.57267215749825	3.89881778054818	3.562371727854	3.58258888021194	3.50756267231763	-0.660034255939435	0.241037507963303	0.638124370429862
Merged-chr9-108005306-3	chr9	108004816	108005816	+	877.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	2668.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	4.19671412462344	3.92871703374267	3.90244482897838	3.86791738260813	3.72914921094553	4.24832012731125	-0.188712100438267	0.725693437797666	0.929707128236285
Merged-chr2-174110512-10	chr2	174110017	174111017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_213733, exon 1 of 12)	exon (NM_213733, exon 1 of 12)	166.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	6.25252574008333	6.2568290190157	6.303382232679	6.74399320503368	6.26860341068548	6.17507748449124	0.256053437678429	0.398185034005525	0.774929344051196
Merged-chr19-4398258-1	chr19	4397758	4398758	+	788.200012	f0_balb.idr	Intergenic	CpG	-1181.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	5.63420283700958	5.77408839621031	5.38873518970384	5.80381808511421	5.59525135956884	5.42092730269533	0.00402585939142	0.990595060250457	0.997892660866058
Merged-chr1-37865204-4	chr1	37864690	37865690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207228)	promoter-TSS (NM_207228)	-108.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	5.83161188308438	5.67752684855799	5.97434105020204	5.97775972059269	5.66380643184846	5.84826455810391	0.0103684659060055	0.973907790798157	0.994171649042264
Merged-chr18-36286969-4	chr18	36286484	36287484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5822.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	7.8130686953627	7.67738281607947	7.50824894575515	7.74570713087236	7.48046485611345	7.77750976697134	-0.0116536951325474	0.960920258871079	0.990386809359123
Merged-chr16-91820472-4	chr16	91820017	91821017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010587, exon 13 of 39)	exon (NM_010587, exon 13 of 39)	91146.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.92453088735288	4.69028505221559	4.99791166069218	4.60275070832118	5.19928170667771	4.95799055701396	0.175560291748124	0.678240808188589	0.913379457468915
Merged-chr5-112343141-4	chr5	112342597	112343597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027323)	promoter-TSS (NM_027323)	2.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	9.1891055262928	9.0928078219808	8.57203928681015	9.04568224649633	9.06331514151564	8.34560689740322	-0.160846948097915	0.576731809058215	0.871713508712211
Merged-chr12-86831772-2	chr12	86831272	86832272	+	853.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53042.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.82612771483856	4.93310104018399	4.47754699157571	4.57305373230285	4.61976691135012	4.6750832714322	-0.353222840802984	0.403116601590641	0.778555989477741
Merged-chr10-79882134-4	chr10	79881658	79882658	+	862.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011178, exon 4 of 5)	exon (NM_011178, exon 4 of 5)	2491.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	3.16505948468814	3.10700395017553	3.20638881216056	2.954732479138	2.85633793716643	3.10811095134361	-0.868101653525705	0.196422955249896	0.58423678218776
Merged-chr2-24383826-4	chr2	24383387	24384387	+	909.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355231, intron 2 of 17)	intron (NM_001355231, intron 2 of 17)	-1445.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	5.72036537745574	5.53225417993366	5.94520289504332	5.68273985493905	5.5538268773962	5.89350047641209	-0.0473304051417714	0.88690474843177	0.973794308941933
Merged-chr5-140613425-2	chr5	140612925	140613925	+	977.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 6 of 7)	intron (NM_008494, intron 6 of 7)	6084.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.57996282781125	3.48740833130051	4.44891787021723	4.1226511796327	3.61969063942437	4.44149482923258	0.474361524727148	0.648497553868512	0.901846547261397
Merged-chr5-144768063-4	chr5	144767558	144768558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-734.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	6.54618967751297	6.65827172975827	6.59940811671495	6.60634876896494	6.58825856478777	6.69087432231541	0.0364948928114433	0.886408851937535	0.973794308941933
Merged-chr11-80185369-4	chr11	80184947	80185947	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	L1MB7|LINE|L1	1575.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	5.91334551694868	5.86974423291418	5.76521819842477	5.67713096103618	5.78885882272187	5.69450079096614	-0.235203735187194	0.440807650348509	0.801983666124386
Merged-chr9-62969263-2	chr9	62968763	62969763	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	11616.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.75541165178204	5.76902148042521	5.47121391844363	6.14657696368644	6.20828019867416	5.62936677095538	0.62122616505773	0.068265243497132	0.341765400583571
Merged-chr18-12168024-4	chr18	12167513	12168513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-717.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	6.83760721592317	7.20072590863134	6.95442024291205	7.4135310495816	7.23594386751865	7.20815171393926	0.419802901795605	0.0977427024247685	0.416925964185171
Merged-chr7-30282946-4	chr7	30282403	30283403	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	RMER19B|LTR|ERVK	-2482.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	6.1307979108442	6.13569846267124	6.38611822277171	4.52218073211701	4.6528964605938	4.66421907965714	-3.25912823334246	7.02826741759246e-17	2.75852865699544e-14
Merged-chr3-51224784-6	chr3	51224270	51225270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009834, exon 1 of 3)	5' UTR (NM_009834, exon 1 of 3)	323.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	8.19972820221594	8.10566580612781	8.09463547685933	8.21880182539384	7.86549727125898	8.0369675624105	-0.125185026233581	0.573456171758595	0.870156136738611
Merged-chr14-27237862-4	chr14	27237368	27238368	+	896.4213869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027871)	promoter-TSS (NM_027871)	-142.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.89654782700515	4.89004281013059	4.43955985216719	4.4556816906026	4.02489795978655	4.22023696459669	-1.32407348237522	0.00521734883221037	0.0629805834369013
Merged-chr9-50948261-4	chr9	50947764	50948764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	60809.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	5.16199454932585	5.31569582803968	5.01881810655124	5.32408953151247	5.18715257555597	5.44107172968353	0.26783419177343	0.457039250754755	0.811993709825292
Merged-chr10-10456687-2	chr10	10456187	10457187	+	930.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15627.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.61875664020295	6.97777330429327	6.84890342201024	7.04817758849409	7.23506162350221	7.36341644904474	0.600596776480889	0.0215948164407915	0.169996356329742
Merged-chr17-56008472-4	chr17	56007959	56008959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	-323.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	5.00874933686551	5.05356135627711	5.40649622052387	4.96037929209416	5.15844418177081	4.96100928958102	-0.249807049208138	0.5142274799792	0.842998279174159
Merged-chr12-30606901-4	chr12	30606399	30607399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22456.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	3.50944916138329	3.81377752578633	3.52426508536471	3.35986929970601	3.48865379509182	3.54052953343863	-0.593342326132279	0.311428657983854	0.706493681156094
Merged-chr2-118883485-4	chr2	118882974	118883974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18141.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	2.51376656248965	2.53971623158991	2.40533838796316	2.7161459029281	2.40346608959364	2.73840938886252	0.774508301027705	0.342193162674001	1
Merged-chr3-57749054-4	chr3	57748498	57749498	+	973.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357080, intron 2 of 10)	intron (NM_001357080, intron 2 of 10)	12941.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	3.25509380558523	3.17080587832352	3.58797299986581	3.3448788674396	3.13714261962467	3.60806098985556	0.104466271662039	0.872498775077894	0.970261003150518
Merged-chr5-125350410-2	chr5	125349910	125350910	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9316.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.71607599178687	2.48621666955301	2.6765456394055	2.59690292658131	2.35067501110784	2.56186395085153	-0.733995090444182	0.363380268479465	1
Merged-chr13-85430221-4	chr13	85429723	85430723	+	925.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140737.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.84677776947338	2.92479199461587	2.90365591922781	2.67319559619591	2.66396918648793	2.60273857968912	-1.33194654411665	0.0759765603963717	0.362741429737279
Merged-chr6-37723554-4	chr6	37723067	37724067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147244.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	4.82285133594605	5.21465955348461	4.81293225925486	6.3331292517449	6.32014475043208	5.58835779066213	2.17246612493039	7.14990253978012e-08	5.2648592082303e-06
Merged-chr4-133829850-2	chr4	133829308	133830308	+	805.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44923.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.83512254752844	4.97161857090246	4.46907401949531	4.35981210974001	4.25923114858829	4.30364811867521	-1.1896483923963	0.00767681712389287	0.0835281793853729
Merged-chr13-23706193-4	chr13	23705677	23706677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347493, intron 2 of 4)	intron (NM_001347493, intron 2 of 4)	4677.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	5.7056628760903	5.43696268304542	5.61319284343405	5.72715650239742	5.60992269105036	5.72844846366191	0.180151570549388	0.575534591591937	0.871222406257859
Merged-chr2-91335399-4	chr2	91334897	91335897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	70282.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	3.76052762518656	3.99669230541505	4.07685152718967	3.73631432300211	3.8418577262253	4.30622987796934	0.0897233743756257	0.870080962948327	0.969998326624549
Merged-chr1-150377469-4	chr1	150376978	150377978	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 9 of 13)	L1_Mus2|LINE|L1	-15360.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	5.20647871791513	5.04219074644183	5.27152780168872	5.15554854075638	5.06556936017058	5.17671930493945	-0.0865345118489845	0.809423285152412	0.954743811731312
Merged-chr7-123084978-4	chr7	123084479	123085479	+	760.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38906.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	3.32920732412381	3.14134012966855	3.27045798788516	3.10827473735973	3.0511966808351	2.98586013688025	-0.861535934533379	0.188311162623478	0.573809654777037
Merged-chr17-36849080-2	chr17	36848569	36849569	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	11923.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	5.54916068752006	5.65094314029293	5.56858399907267	6.03423000830956	5.72828609749706	5.76807897904291	0.470400849959185	0.139483269357393	0.499084106249493
Merged-chr12-36217115-4	chr12	36216589	36217589	+	762.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	1129.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	3.306501942788	3.80774075316257	3.53582124542937	3.57228745350186	3.49867366387114	3.60682856093558	-0.0488198342108847	0.935140768920529	0.985775370567048
Merged-chr7-44124046-1	chr7	44123546	44124546	+	565.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	11373.0	NM_010114	13646.0	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	3.12978927718392	3.16842937719287	3.84876942833132	3.11823712438979	2.8567215687418	3.23824136950728	-1.39138136559278	0.0570339666516797	0.307961213312976
Merged-chr16-10981862-2	chr16	10981362	10982362	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	11259.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.72615329332212	4.807298883097	5.23667813026846	4.87247042437194	4.63738798313061	5.29893515232466	0.045395279902974	0.918176454876336	0.981747877135909
Merged-chr2-35464723-3	chr2	35464216	35465216	+	711.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3267.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.16374705895369	4.01170529232741	4.41310503568644	4.19030037673593	4.24111530335567	4.87083614887735	0.684886468983968	0.182080119899569	0.564677675828242
Merged-chr17-66519795-4	chr17	66519325	66520325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024448)	promoter-TSS (NM_024448)	-155.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	6.63997116052767	6.18178193427159	6.30620917135419	6.72135508416507	6.13222102804166	6.05932655300635	-0.0803549531058243	0.811343615211834	0.955235016194729
Merged-chr19-56387955-4	chr19	56387467	56388467	+	946.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198059, intron 3 of 40)	intron (NM_198059, intron 3 of 40)	2071.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	4.66700326300127	4.70917787703402	4.19245995995667	4.57639831675009	4.64047361647831	4.50369958772769	0.0529964931683066	0.907101717859025	0.978868492078838
Merged-chr1-93575495-3	chr1	93574982	93575982	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 9 of 26)	intron (NM_145519, intron 9 of 26)	60245.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.54575458106134	3.76276302801969	3.42163337245096	3.69936361693414	3.59285149805076	3.76750816286745	0.314780583866118	0.581673757400533	0.873408102603692
Merged-chr2-160288103-1	chr2	160287603	160288603	+	863.3333130000001	f0_balb.idr	Intergenic	Intergenic	39391.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.09365737955355	4.05536491781342	4.09657781916731	4.05279569458346	3.95884530496199	4.02178853383971	-0.211344893003488	0.660654333109605	0.906047694972706
Merged-chr3-96247401-2	chr3	96246901	96247901	+	938.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178216).2	TTS (NM_178216).2	701.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	2.73966874821301	2.70735343365443	2.90525853566689	3.06617154980677	3.45250157656419	3.04276013008534	2.09901179103353	0.00465688823059822	0.0583042967035234
Merged-chr6-83689590-4	chr6	83689108	83690108	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11751.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	3.43845710594414	3.10359371168915	3.21623181607218	3.26017143872432	3.22604444238731	3.50788199308976	0.274015024316236	0.668313650900573	0.909090113848862
Merged-chr7-97299053-2	chr7	97298553	97299553	+	578.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010248, exon 4 of 10)	exon (NM_010248, exon 4 of 10)	26911.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	2.30533361839197	2.30915034679433	2.52412782496718	2.35355074878332	2.35699580072191	2.47353269242547	0.0950878349561931	0.907855908903702	1
Merged-chr14-31190427-2	chr14	31189927	31190927	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 6 of 13)	intron (NM_001347583, intron 6 of 13)	16399.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	4.95292991293935	5.09848766400977	5.18237280806215	4.88539407935379	4.88806282561608	5.27576211294264	-0.127315783993658	0.741095142047357	0.934742147011145
Merged-chr3-88654867-3	chr3	88654372	88655372	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	2.13540130848485	2.24978935897493	2.26814671573605	2.0555713572263	1.93961330738759	1.93647638438364	-1.98765223498328	0.0457796099515111	1
Merged-chr16-55812689-3	chr16	55812163	55813163	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	9475.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.9339341645075	3.83477575282537	4.2797977629953	3.87784423575567	3.57884761564264	4.13804075586384	-0.444721889990938	0.427013425382227	0.7939695894886
Merged-chr6-113330805-4	chr6	113330354	113331354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010957, intron 3 of 6)	ORR1A4|LTR|ERVL-MaLR	3878.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	4.89495049506292	4.93217074559583	5.02053562129816	4.65502123408876	4.92132998041435	5.18051691653965	-0.0396483001664309	0.920829438976075	0.982463724790289
Merged-chr11-79621929-2	chr11	79621429	79622429	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	1234.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	4.20461923444298	4.06320330870045	3.84324635502366	4.15190122099933	3.9811849063738	3.56085516672665	-0.361690639200238	0.526246587840012	0.849360400376144
Merged-chr13-56633896-3	chr13	56633374	56634374	+	708.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24288.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.24754605790259	4.4994354057242	4.71409756763127	4.57323367404167	4.33466252820626	4.88279100958399	0.274263510241207	0.557471080498177	0.864245693030104
Merged-chr7-67526083-4	chr7	67525592	67526592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	MER21B|LTR|ERVL	119144.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	6.3836311487464	6.19949429775051	6.07323294801749	5.53607504184853	5.75675186451064	6.0231884833026	-0.785860591334324	0.0130829180220046	0.121389369274906
Merged-chr17-12135199-4	chr17	12134768	12135768	+	967.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	15984.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	2.96670498334555	3.00911116417018	3.24120274638451	2.98285423596317	2.97304266656719	3.08981592217526	-0.264726053631087	0.692616233447814	0.91870248759071
Merged-chr14-66250349-3	chr14	66249861	66250861	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	30691.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.12832123854255	3.04755422701089	2.99636834315	3.22558115187659	3.03606790239793	3.13021778204715	0.307388043291817	0.638893514351232	0.897847437626511
Merged-chr11-70247640-3	chr11	70247137	70248137	+	854.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 8 of 13)	intron (NM_007440, intron 8 of 13)	7733.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	2.18776818176776	2.20579974717215	2.60272532696144	2.46406586952088	2.33820113190293	2.6163819372889	0.830965283136477	0.346218032467876	1
Merged-chr11-84916393-4	chr11	84915893	84916893	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005223)	promoter-TSS (NM_001005223)	-27.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	4.7304028300582	4.80034370165791	4.41593084330544	4.86239335536356	4.62110519197729	4.53140363652121	0.0280145619559727	0.948260699428799	0.988083630162243
Merged-chr11-51582937-4	chr11	51582486	51583486	+	834.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-1771.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	3.04034625489192	3.03996643362581	3.02083739904167	2.83223608523652	2.65852720609395	3.25920896033659	-0.447281020893479	0.551346853452246	0.861159830076033
Merged-chr8-70354205-4	chr8	70353710	70354710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-931.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	5.98931065735248	6.17501919269458	6.22477725462918	6.56199213638962	6.58210398302885	6.79525570175398	0.844354914741919	0.00230954271113435	0.0344970986001264
Merged-chr10-86781220-4	chr10	86780738	86781738	+	853.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2233.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	4.1861539684012	4.22723989987471	4.5103661348747	4.17244401453644	4.08737596160936	4.19931086385444	-0.429428101807256	0.361383865284781	0.747285684599917
Merged-chr14-34310511-4	chr14	34310024	34311024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008133)	promoter-TSS (NM_008133)	-7.0	NM_001360074	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	7.40809030376252	7.85474609365655	7.46979179814754	7.48120795855879	7.47566814743971	7.44313298887917	-0.192394311926252	0.437223762626767	0.799848369002863
Merged-chr10-62324046-4	chr10	62323525	62324525	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	Lx5b|LINE|L1	16396.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	3.64750324816282	3.90146389067591	3.82413053020117	3.93366891421879	3.91899476695057	3.99206484021196	0.472306117073015	0.361217934166982	0.747169629644794
Merged-chr6-136655917-1	chr6	136655417	136656417	+	614.0	f1_balb.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5976.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	4.76911734433756	4.47707374677789	4.7703250879691	5.65854545818075	5.69630743229901	5.24911002848676	1.85848016801291	1.7456195543199e-06	8.80833910708615e-05
Merged-chr6-125039705-4	chr6	125039199	125040199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-149.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	7.39457455960922	7.45303463246709	7.24286104768827	7.6978755781495	8.0680594209803	7.61414891456479	0.648334829585132	0.00926205675200101	0.0954517238321155
Merged-chr19-4121186-4	chr19	4120680	4121680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	395.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	6.53254655581706	6.50272645591164	6.55226111260004	6.40676452493696	6.5621408931008	6.43299815976289	-0.0867059488957014	0.740947975240903	0.934712654423072
Merged-chr8-94036514-2	chr8	94036014	94037014	+	749.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	525.0	NM_026623	68219.0	Mm.354445	NM_026623	ENSMUSG00000031754	Nudt21	25kDa|3110048P04Rik|5730530J16Rik|AU014860|AW549947|Cpsf5	nudix (nucleoside diphosphate linked moiety X)-type motif 21	protein-coding	5.74267395463033	5.61096450178253	5.89337026139406	6.01937901540875	5.62421004959876	5.90761832217134	0.193759575005828	0.550584496594402	0.860709619458349
Merged-chr14-77876605-2	chr14	77876062	77877062	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1645.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.81409211598456	3.82639555329914	4.21888322592281	5.20832986326622	5.44428462772141	5.25951225388213	3.59681153765164	2.19348462374659e-13	4.7530069940809e-11
Merged-chr14-57713023-4	chr14	57712518	57713518	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	21400.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	3.77187249242476	3.49770725123656	3.87082338689025	3.73543511201905	3.77585778075243	3.74092265607061	0.117944559543112	0.829840476980332	0.960134151531511
Merged-chr1-92052429-4	chr1	92051916	92052916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	127925.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	3.89207001053748	3.94551356659419	3.72830238587583	3.57658845443104	3.18079256479296	3.69439828603512	-1.28681708700633	0.035538349247801	0.231437345559288
Merged-chr2-59340259-1	chr2	59339759	59340759	+	614.0	f0_balb.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46423.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.3006952813342	5.61089075867937	4.94439617178922	4.71547689641286	4.90063114753251	4.81176601199482	-1.0783358100016	0.00806154440197035	0.0865194101121048
Merged-chr11-98683076-2	chr11	98682576	98683576	+	996.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009439, intron 1 of 11)	intron (NM_009439, intron 1 of 11)	522.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	7.21004983210974	7.23383901692824	7.07776179437356	7.21031292667218	7.18739564093096	7.17353352586643	0.0156862889917219	0.94623004893703	0.98796006280508
Merged-chr5-74126684-4	chr5	74126197	74127197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33167.0	NR_031758	100313943.0	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA	3.85471001932205	3.9360352284439	4.40338557018201	3.82081502659233	3.52469035718614	3.59820799351725	-1.34955532586211	0.0185191436041473	0.153646412171797
Merged-chr10-118809581-2	chr10	118809081	118810081	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	59322.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.62100727983843	3.60887051776006	3.8962960506652	3.71479473065728	3.55277527625636	3.82215201546968	-0.0444703263100906	0.936048587085819	0.986014061025137
Merged-chr1-134967876-3	chr1	134967408	134968408	+	771.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026024, intron 2 of 6)	intron (NM_026024, intron 2 of 6)	5343.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	3.11002262126576	3.51828991396378	3.23928021218965	3.35987007236809	3.37507397189118	3.311373979517	0.173261933534093	0.785693363590168	0.948164689606319
Merged-chr5-117373619-4	chr5	117373103	117374103	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 4 of 8)	intron (NM_021539, intron 4 of 8)	15420.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	4.86650732718094	4.87936579928651	4.86286307902362	4.62547561392742	4.34478853616051	4.78119508298147	-0.675733176873567	0.105380180488143	0.433339508714069
Merged-chr5-142402421-2	chr5	142401921	142402921	+	809.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	924.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	5.24322606349202	5.04741155614882	5.44364462751195	5.60879288238341	5.18315487302933	5.01663558277291	0.105631494897158	0.786722366066587	0.948581287286895
Merged-chr2-128775348-1	chr2	128774848	128775848	+	679.0	f1_c57bl6.idr	intron (NM_008587, intron 9 of 18)	Tigger6a|DNA|TcMar-Tigger	-42955.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.83815070567454	3.64710119813139	3.63436653893355	3.75431421887992	3.67685187299303	4.00357857332821	0.317673385539487	0.560721567325366	0.865261302076164
Merged-chr19-4302844-2	chr19	4302344	4303344	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3378.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.93991588747526	4.78943056258282	5.20959147891197	5.0242928985086	4.88552148518711	5.08276163474262	0.0316894947020696	0.935059116391674	0.985758101267319
Merged-chr17-71021204-3	chr17	71020723	71021723	+	642.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 1 of 36)	RSINE1|SINE|B4	1666.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.41035408277764	3.68311352119443	3.45345618405064	3.50864434410068	3.6479038636704	3.40983527689662	0.0241490413469162	0.967380170000417	0.992555129128888
Merged-chr18-60525439-2	chr18	60524993	60525993	+	894.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357462)	promoter-TSS (NM_001357462)	-661.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	7.2288498857086	7.52673168651322	7.11565869481026	7.18846552310085	7.32562467713291	6.70632833542608	-0.292394114898297	0.308850637327715	0.70476767553933
Merged-chr8-91082604-2	chr8	91082114	91083114	+	911.0	f0_balb.idr|f1_balb.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12557.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	5.25199608192339	5.01223146468501	5.43917820323038	4.51977895313544	4.20949210206085	4.48085791761573	-1.94702518871617	5.62986797148472e-06	0.000244366225441471
Merged-chr11-106158309-3	chr11	106157809	106158809	+	862.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	1618.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.66673509446351	3.6618970920205	4.09265997572768	4.14787118580716	3.72685358532568	4.16014584813725	0.634109437314295	0.255565548614766	0.652663991441209
Merged-chr10-99267730-3	chr10	99267244	99268244	+	593.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026268)	TTS (NM_026268)	4513.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.25793146281589	6.15784981612979	6.06562886806862	5.96209487282422	6.28052751998322	6.31323602971647	0.0450288558763745	0.878283579220486	0.971842464414451
Merged-chr3-108200568-4	chr3	108200182	108201182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081320, exon 1 of 3)	exon (NM_001081320, exon 1 of 3)	152.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	6.85289159431483	6.76537151832297	7.04764169738219	6.98481853075393	6.91396558211115	6.98829546498877	0.114700559838471	0.644833557790879	0.900317314528885
Merged-chr7-139247289-1	chr7	139246789	139247789	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1193.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	7.09412418123033	7.61384142154162	7.34242230746886	7.22181707131663	7.46043974306477	7.6364559154999	0.113204766816793	0.674728591704399	0.911853445810291
Merged-chr19-55897798-2	chr19	55897298	55898298	+	868.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	2477.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	2.81446312325017	2.70448434437032	2.93825029932134	2.79189978107064	2.56278920838584	3.01022864083471	-0.122250697345207	0.871765298416292	0.970250220039897
Merged-chr7-19321605-4	chr7	19321096	19322096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11551.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.39505739089927	5.40949134014081	4.94605825168502	5.40201774271376	5.4687953900672	5.3028573879784	0.227272400162748	0.534652020906156	0.853068627162717
Merged-chr2-124741113-3	chr2	124740608	124741608	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87527.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.04466586149795	6.09474024753675	6.08944729926181	5.82029617133742	5.9499987108647	6.19118030763245	-0.152483078080322	0.60835503842006	0.88499088740025
Merged-chr7-45105637-3	chr7	45105141	45106141	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1819.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	4.40522002867041	4.75804875591092	4.47846942063991	4.32210796958121	4.2146368300821	4.3260225636366	-0.713583695140305	0.112808789008223	0.448580074747098
Merged-chr2-91204846-4	chr2	91204339	91205339	+	918.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	1927.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	6.71753931713144	6.92481101306064	6.92319588140719	6.9747002116101	7.21153130066336	6.91029362716946	0.292183108121621	0.254041270211074	0.651179145391095
Merged-chr12-111040035-4	chr12	111039490	111040490	+	910.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198023, exon 2 of 12)	exon (NM_198023, exon 2 of 12)	192.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	6.13148998988081	5.71561388350034	5.91607468376029	6.21111761589595	5.52560363917909	5.88071930491726	-0.0578270533217371	0.870554067304906	0.970084781962666
Merged-chr19-3582670-2	chr19	3582170	3583170	+	606.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-6921.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	2.95046993738096	3.05671650057243	3.21297129929075	2.90660857680954	2.91041490757718	3.3876979734611	0.0302578870780981	0.965748392653051	0.992046617808701
Merged-chr13-107761541-2	chr13	107761041	107762041	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	74144.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.6226500604539	3.80787470249558	3.81793065890641	3.9764219131227	3.53964453834507	3.98347782079477	0.293981226426919	0.599199194507561	0.880924908462167
Merged-chr7-64374076-4	chr7	64373568	64374568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177893)	promoter-TSS (NM_177893)	27.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.39394494139132	6.67340171668396	6.58454704515718	6.59250296789324	6.4687006998792	6.75416623361658	0.0741959391691853	0.785372585446693	0.947890183314723
Merged-chr5-76303131-2	chr5	76302631	76303631	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 2 of 22)	intron (NM_007715, intron 2 of 22)	371.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	4.61891831103351	4.82787470826532	4.50476479067286	4.36196023530279	4.77337240536998	4.43864312140392	-0.273765850200759	0.54127737254039	0.856797425729538
Merged-chr12-17675911-2	chr12	17675411	17676411	+	628.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14898.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.75743449238499	2.6247882040311	2.72246816127449	2.59831773412786	2.62445222220549	2.40261476919364	-0.860077954853079	0.285759554761579	1
Merged-chr5-123139263-4	chr5	123138838	123139838	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	8.3889103865876	8.85980818646945	8.35672146206302	8.45531842718474	8.70647696992196	8.56878456829565	0.0282615946253723	0.907176060453892	0.978868492078838
Merged-chr14-20728317-1	chr14	20727817	20728817	+	555.0	f1_c57bl6.idr	intron (NM_010811, intron 5 of 14)	intron (NM_010811, intron 5 of 14)	6245.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	2.63408350483689	2.78704848500859	3.00800767477893	2.65403911514102	2.52180421708147	2.91102139150078	-0.59699294476754	0.443726355047822	0.803884349333946
Merged-chr2-11503286-4	chr2	11502790	11503790	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	-1200.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.66548058782936	4.82598164372068	4.22268021741864	4.60962063115776	4.52733562084519	4.24264970553245	-0.320194075134007	0.502379560228813	0.836485922295083
Merged-chr17-44239486-2	chr17	44238941	44239941	+	800.0	f0_balb.idr|f1_balb.idr	intron (NM_172621, intron 2 of 5)	intron (NM_172621, intron 2 of 5)	50869.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	3.30122338072019	3.13819657329012	3.21212296072945	2.69987195171077	2.74826176015853	2.93282933979836	-2.17908938567106	0.00347343335713596	0.0469260338984525
Merged-chr17-31519565-1	chr17	31519065	31520065	+	1000.0	f1_balb.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-550.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	6.10828824663238	6.06008410001344	6.20220089876932	6.15863929170727	6.29901835713282	6.32115465675776	0.238006235515633	0.394805503787997	0.772579826044138
Merged-chr13-37893816-1	chr13	37893316	37894316	+	610.666687	f0_balb.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	4945.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.82798628738387	4.63207197436206	4.82008308911196	4.46651880459143	4.49976092642335	4.69879456454274	-0.497561225487296	0.229891572845164	0.625594989479033
Merged-chr5-66104635-1	chr5	66104135	66105135	+	916.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	L2c|LINE|L2	-6456.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.06745580996872	5.19454026611547	5.40886316721136	5.0888265973476	5.26282168032735	5.44301296204019	0.091326369061969	0.802484596951007	0.953198534492307
Merged-chr17-17896210-4	chr17	17895727	17896727	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8403.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	4.90076498417464	4.3393853842053	4.3738348049256	4.61575086333663	4.34466471858113	4.5737494744278	-0.148303235514021	0.752687594518842	0.938355947571674
Merged-chr16-91633829-2	chr16	91633365	91634365	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 11 of 21)	intron (NM_001357351, intron 11 of 21)	13107.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	3.47854905196744	3.50295274063388	3.47172156582294	3.61906448783386	3.8375531964301	3.80769702427817	0.955836882263567	0.0864269224254464	0.389422485294003
Merged-chr11-83648432-4	chr11	83647938	83648938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011337, intron 2 of 2)	intron (NM_011337, intron 2 of 2)	940.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	7.44470632143907	7.48833308982641	7.453034253323	7.22564561517734	7.54620756853422	7.14178837744374	-0.198567731219243	0.419160527702713	0.78883406136263
Merged-chr7-66121223-4	chr7	66120726	66121726	+	807.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	11711.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	4.76463045192434	5.02222513020216	4.94508025366959	4.94252930335981	4.89128608481295	4.97431664852053	0.0404718513063367	0.915657227613558	0.981172495174226
Merged-chr1-191718148-7	chr1	191717668	191718668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134829)	promoter-TSS (NM_001134829)	144.0	NM_172266	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	5.79461958150939	5.32362259453004	5.68297135204068	5.59894893611595	5.16103367945768	5.24584884204318	-0.506338256239522	0.171940059074326	0.550414849720006
Merged-chr4-130803927-4	chr4	130803334	130804334	+	932.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	11297.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.02603781080226	6.93357276228512	7.03063774283963	7.60135721266848	7.59995377657304	7.22988347714852	0.746849918650549	0.00241254027595396	0.0357014090309337
Merged-chr18-82913233-4	chr18	82912691	82913691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	-1441.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	8.02578268224674	8.09347072735185	7.64319457914976	8.1937928749109	8.40740007277568	7.5556953687427	0.239866869179704	0.415683723446331	0.78656116488557
Merged-chr9-90066884-1	chr9	90066384	90067384	+	547.0	f1_balb.idr	intron (NM_001312649, intron 6 of 10)	intron (NM_001312649, intron 6 of 10)	12617.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.05864852886822	3.98260556855117	3.85140885110539	4.07904055036703	4.37698584463735	4.47570363725069	0.971655603779002	0.0500598549368148	0.284909740737516
Merged-chr5-99250485-2	chr5	99249990	99250990	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2437.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.5220071705825	8.74844405456978	8.36133187748984	8.51382081126587	8.63717313998272	8.40482905460292	-0.0460495901277635	0.835784598182612	0.961841448068673
Merged-chr1-45872389-4	chr1	45871871	45872871	+	768.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53223.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.94872486136497	6.17871060701236	6.30787913095789	6.148705642701	6.23094245346154	6.18956384970555	0.0772797286810776	0.790038657137405	0.949368241827272
Merged-chr19-29372029-3	chr19	29371598	29372598	+	796.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	4660.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	7.00911292630724	7.34003360445493	6.96838932202726	7.06531096265192	7.16067447431504	6.84966800919644	-0.127244843107699	0.629153463463285	0.894102600943674
Merged-chr11-70461107-2	chr11	70460607	70461607	+	708.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 2 of 14)	exon (NM_001348337, exon 2 of 14)	-1123.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	3.14064480311621	3.42417054126278	3.26083746019383	3.24662440921665	3.23665770685736	3.33212608964229	-0.0544238236737689	0.930597377421558	0.984625325121825
Merged-chr5-123027182-2	chr5	123026682	123027682	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	ID_B1|SINE|B4	12108.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.65668531102178	4.48968096380422	4.93202964051597	4.37975624470964	4.55640783160872	4.71597930071235	-0.340512670595636	0.4367133156484	0.799587236906924
Merged-chr9-72957511-3	chr9	72957008	72958008	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	3.79232728353689	3.96113719561965	3.99047472579434	3.69817380471176	4.09469733121657	4.23633712486408	0.332266279851561	0.532627534414493	0.851971173271146
Merged-chr18-62066728-2	chr18	62066228	62067228	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113253.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	2.4653990321053	2.43650443068187	2.39967496488617	2.78088001464289	2.89975668892802	2.80536596152258	2.41627134621532	0.0040547062235995	1
Merged-chr18-76241353-4	chr18	76240834	76241834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-367.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	7.6022093880464	7.52368160230444	7.43576571121358	7.87914511201489	7.49381979131329	7.32501831507272	0.0983534782071127	0.700523481053694	0.920919335036368
Merged-chr9-99138515-2	chr9	99138015	99139015	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1696.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.64877617324093	3.53224579271875	3.76176340983166	3.90785163990485	4.02540961651001	3.83204881530593	0.93224908594354	0.0797941860202153	0.373590494619515
Merged-chr16-10990693-2	chr16	10990193	10991193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	2428.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	6.4947165704694	6.04880977627236	6.36795789081039	6.49127147086467	6.55992368180032	6.40882072924035	0.288832264361916	0.317439645200386	0.711302795223616
Merged-chr17-28702869-4	chr17	28702379	28703379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	10311.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.72189219057082	6.49856682384346	6.46114292614214	6.11609747145174	6.44932064922084	6.15879106762245	-0.502540421524809	0.0815910218697398	0.377818383893701
Merged-chr10-88356372-2	chr10	88355872	88356872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	PB1D9|SINE|Alu	703.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.21366560280702	6.05009008620072	5.71741287779873	6.11297862068775	6.30755092058081	6.08518246263045	0.265109783448246	0.395025516156615	0.772579826044138
Merged-chr1-171407965-2	chr1	171407461	171408461	+	713.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-3352.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	3.13959470912192	3.15978037886353	3.88323618284216	3.19079805730023	3.40329316320161	3.53414634941005	-0.209954266149511	0.762821817701664	0.941663714620562
Merged-chr11-120626292-2	chr11	120625792	120626792	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	3.23789895275574	3.377282100681	3.81473058753856	3.4706452624262	3.35707270075484	3.88239290574678	0.317412421985777	0.62313708541217	0.891286983395811
Merged-chr15-57977025-3	chr15	57976528	57977528	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8875.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	6.60872792701808	6.86176332474701	6.96536398604961	6.83764827810961	7.12658125351225	6.8548698951023	0.214444649962145	0.422130078665421	0.79098189652931
Merged-chr3-37140338-4	chr3	37139841	37140841	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-14387.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	4.432479689895	4.36279587154429	4.81268237727891	4.15786529347776	4.34096811693527	4.46972163173104	-0.547722457246781	0.238724897772059	0.635449458992732
Merged-chr8-39650172-4	chr8	39649654	39650654	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7476.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.72467789733881	5.83441968168261	5.71544899796323	5.208076101719	5.4147987645747	5.5921534907272	-0.665338423721523	0.0444550808452226	0.265686703064321
Merged-chr9-54559564-2	chr9	54559064	54560064	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	515.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	3.36135514103489	3.54818430772873	3.36887561548006	3.42947854047128	3.15848675780316	3.60089870016217	-0.116776146154797	0.851330896620214	0.965211450762173
Merged-chr7-80848447-2	chr7	80847947	80848947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-13661.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	2.4987674563975	2.46474539394197	2.42790764170219	2.60708341276581	2.70808201296879	2.75780068662541	1.32417979173873	0.0928828441226176	1
Merged-chr1-58734225-4	chr1	58733737	58734737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 4 of 8)	intron (NM_001355056, intron 4 of 8)	3685.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	6.88129442880425	6.81434407784976	6.50826483466753	6.8590719747745	6.88354178894018	6.47259292549165	0.0134050872532791	0.962035619206249	0.990718447046543
Merged-chr10-98782187-2	chr10	98781687	98782687	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132455.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.34689572066569	3.95863252871246	4.22239655041912	4.15080589120982	3.80284702139802	4.10752245114866	-0.465706997970252	0.362723533346167	0.748215076668845
Merged-chr8-25200530-4	chr8	25200052	25201052	+	780.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 1 of 12)	intron (NM_177089, intron 1 of 12)	990.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	5.39146030882106	5.59066296400746	5.20532369299333	4.9980504149478	5.20679454841693	5.16803953154484	-0.573663706606262	0.113163493379355	0.44938889230771
Merged-chr1-123933318-2	chr1	123932777	123933777	+	708.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	L1_Mus2|LINE|L1	112282.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.69359202466146	4.44366530804551	4.87208176748629	4.29073293341152	4.33281458480416	4.21200861145451	-0.981788608745462	0.0303597492866175	0.210484407470555
Merged-chr9-59551712-2	chr9	59551212	59552212	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	12172.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	5.65486389160779	5.3972413692081	5.78168743463066	5.63114784188477	5.47160372109194	5.49967316130314	-0.144929194664585	0.665298983195604	0.907762144972922
Merged-chr10-118709117-1	chr10	118708617	118709617	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-152592.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.53496793799283	5.31712307303274	5.38282112557971	5.15544444542583	4.80080191792799	4.98114974976778	-0.893819101547486	0.0153493768067315	0.134867048081786
Merged-chr1-153543678-3	chr1	153543179	153544179	+	860.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6035.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.55429529605116	4.51453722490634	4.36532287215296	3.96434899465234	3.80479160049916	3.89945657220923	-1.72089866024264	0.00039963082786094	0.00878765378558485
Merged-chr16-92852089-2	chr16	92851589	92852589	+	912.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26015.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.77828762177087	2.82343544659465	3.09803135466115	2.58840812256486	2.62184513949588	2.88966684386821	-1.0481898763404	0.169417310655349	0.546263488530196
Merged-chr3-123386982-3	chr3	123386472	123387472	+	877.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-982.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	4.05473703346177	3.68049127210264	3.84153556828484	4.62199901799098	5.00849496625386	4.67737409009995	2.49294339760638	1.17073650715493e-06	6.23653286090571e-05
Merged-chr7-133115154-3	chr7	133114659	133115659	+	726.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	8324.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.31127912728276	4.6835114088208	4.38947226492051	4.35947222280391	4.66394726362816	4.45750903788185	0.0728248595550841	0.872621203797054	0.970261003150518
Merged-chr10-80702622-4	chr10	80702115	80703115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-78.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	6.00894652819958	5.9679830651088	6.48417206447774	6.05262951997847	5.97567751753428	6.33630996001504	-0.0699239561245094	0.828228247982522	0.959644980564395
Merged-chr14-14552341-4	chr14	14551848	14552848	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-150677.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.50201411830422	4.49824369898934	4.53190649952358	3.8543577700517	3.86073456865347	3.96959849617132	-1.77127105441193	0.000234208551164093	0.00568827353335138
Merged-chr10-117872797-4	chr10	117872309	117873309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26835.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.48786813661757	7.6449322599302	7.1810092038193	7.17786603834526	7.48365459639597	7.00952444940584	-0.310344290044067	0.253434002099954	0.650876151940893
Merged-chr19-4145145-4	chr19	4144643	4145643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-3520.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	7.10408650455269	6.88961211374908	7.01340022160618	6.74812263402143	6.96085318535292	7.31796371298367	0.0282835257917515	0.917706430113661	0.981718564389729
Merged-chr11-17003680-2	chr11	17003180	17004180	+	959.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5038.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.70528762078083	7.76220690321324	7.73461132656513	7.42925777215389	7.75518890692428	7.71309588840668	-0.133454854774338	0.56072821021673	0.865261302076164
Merged-chr16-27376757-4	chr16	27376254	27377254	+	946.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6515.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	4.09796585105544	4.25183271516886	4.00682183660139	4.16673663598172	4.19314392767757	4.02607559521616	0.0189541670660587	0.968623496785164	0.992811398801848
Merged-chr5-24878036-4	chr5	24877538	24878538	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145401, intron 8 of 15)	intron (NM_145401, intron 8 of 15)	-24531.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	3.29332080620455	3.28474716890218	3.11049253967433	3.08611221616786	3.08806610690578	3.56409966864647	0.0955518515437747	0.886514395967108	0.973794308941933
Merged-chr13-46728536-2	chr13	46728038	46729038	+	832.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-689.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	5.91587627471726	5.80120870222499	5.7984725800577	5.96935555032092	6.12264815579786	5.83469463397229	0.262550152659185	0.385578339896436	0.766591069902819
Merged-chr16-77034866-4	chr16	77034354	77035354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 2 of 23)	MIR|SINE|MIR	20785.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	4.39673632651898	4.51353665101836	4.38703647124057	4.44808567867494	4.29940310622605	4.80463088402345	0.213913280582556	0.637667746558396	0.89735407749672
Merged-chr6-82042906-3	chr6	82042347	82043347	+	647.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	1219.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	5.31714099993532	5.42095441484562	4.93686779891201	3.74831478099797	3.91851085957567	3.93812742816222	-3.7616343956885	9.54894756906784e-12	1.54581484304863e-09
Merged-chr11-75513028-2	chr11	75512528	75513528	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-513.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	5.01127676270717	4.98927523599435	5.35652066213665	5.11232875854205	5.25198780027927	5.47451894343406	0.33511845972079	0.370448684906905	0.754835402087431
Merged-chr5-103472886-4	chr5	103472389	103473389	+	938.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	47697.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	5.23167083443515	5.35101925867027	4.86316503219462	5.30956396460042	5.32791949686475	4.97127224690602	0.0911922989230407	0.814745187131989	0.956370078970016
Merged-chr11-76216626-2	chr11	76216125	76217125	+	671.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021294)	promoter-TSS (NM_021294)	947.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	3.74137241222075	3.69450420684175	3.63739751824907	3.8063507446372	3.65117002186615	3.59817399857022	-0.0151046985509496	0.977817201667617	0.994946721895498
Merged-chr11-95001273-4	chr11	95000732	95001732	+	701.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172261, exon 5 of 10)	exon (NM_172261, exon 5 of 10)	-8647.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	2.47260178242794	2.4383172473807	2.88873992403765	2.47612511521136	2.43102948319113	2.90524175129896	0.0320811126830039	0.969704446752968	0.993198925979166
Merged-chr3-19187454-2	chr3	19186954	19187954	+	659.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026182)	promoter-TSS (NM_026182)	134.0	NM_001253391	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	3.58415864283833	3.9784445982618	4.03765478646416	3.6530277467322	3.68809084768949	3.71991668926919	-0.622014487972536	0.262787224990729	0.660760123749194
Merged-chr5-147539831-2	chr5	147539331	147540331	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	109675.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.31255067935471	4.47658110005898	4.31967721424858	4.45601882324804	4.69025268359648	4.38834153693136	0.385837900426419	0.384667363723378	0.765846647784445
Merged-chr11-53820858-3	chr11	53820352	53821352	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	38404.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	2.80956416578132	2.87984349303812	3.04084803268878	3.32102711719159	3.27813333708194	3.1145570635019	1.55797915686454	0.0227310755088808	0.175814029647049
Merged-chr11-97946078-4	chr11	97945596	97946596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 7 of 13)	MTD|LTR|ERVL-MaLR	40350.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	5.93461325507589	6.01266274995643	6.1468250753659	6.19808768058976	6.501530201579	6.16471558170602	0.472841588860429	0.108822146539588	0.440755119220504
Merged-chr8-83141512-4	chr8	83141035	83142035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23817.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	7.80041934433742	7.91008813630524	7.42041596556403	7.23277212373651	7.51194797983056	7.1133631507053	-0.624795279615652	0.0182486852313293	0.152254747892154
Merged-chr14-61394465-2	chr14	61393965	61394965	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 2 of 16)	L1M4|LINE|L1	-34020.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	3.63196868304974	3.59243292335023	4.04868398729897	3.62261005420301	3.64367195206013	3.52972304608742	-0.545336978597205	0.342867250104379	0.731786497147175
Merged-chr10-111972656-4	chr10	111972150	111973150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-45.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	6.42865056697597	6.73414161475822	6.13529428793374	6.1443901455316	6.51962771083259	6.65085129259882	-0.0220996397802998	0.944749239785295	0.98786315338489
Merged-chr6-82797607-4	chr6	82797098	82798098	+	975.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23144.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.7971720380061	7.27892857906315	7.1251868223992	7.27271685145937	7.2149918337904	7.145484810825	0.19580940781655	0.452108782886519	0.809286173636239
Merged-chr14-26626805-4	chr14	26626311	26627311	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285467, intron 16 of 19)	intron (NM_001285467, intron 16 of 19)	-11323.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	5.46132335212143	5.44399888978404	5.55298651139762	5.553266609526	5.65877195208762	5.44060282872254	0.151494306782751	0.642363206657938	0.899398873915991
Merged-chr5-135144437-4	chr5	135143935	135144935	+	834.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5276.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	3.79894734699627	3.70573297560766	4.14846945272923	3.94200418945706	3.90378577029359	4.08371321761004	0.266495494066739	0.612390899339673	0.886697094893687
Merged-chr1-51476260-2	chr1	51475760	51476760	+	776.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	2139.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.598939393956	4.68954768115933	4.43497674561333	4.79289244283201	4.47892908499335	4.71299648075954	0.181240315444402	0.67110011404354	0.910289924720412
Merged-chr11-77368957-3	chr11	77368434	77369434	+	757.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	20654.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	5.40325751187268	5.04686113141623	5.4747873838146	5.57630943004222	5.43294861357778	5.59226434604023	0.423710119601548	0.229381918834119	0.624902946742278
Merged-chr13-21750578-4	chr13	21750069	21751069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178211)	promoter-TSS (NM_178211)	-16.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	5.30750192539158	5.16754027818884	5.44022387317981	5.42299965965989	5.69505235806041	6.11230803201103	0.873232923279804	0.0172880535190441	0.146514762833639
Merged-chr8-95887863-2	chr8	95887339	95888339	+	638.833374	f0_balb.idr|f0_c57.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	526.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	5.70657473171543	5.82757594443143	5.53545122944234	6.00508996901846	5.93647086857775	5.59926610325535	0.295316100550816	0.365273474310706	0.750422106947654
Merged-chr11-32560602-4	chr11	32560107	32561107	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	27341.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.30459552642804	7.37807163789481	7.24524959511537	7.19024680011425	7.49175026803839	7.04791021903372	-0.0659119062629538	0.793945763772042	0.950531747588938
Merged-chr19-10697409-2	chr19	10696909	10697909	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-3359.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	3.86525824187099	3.82587600059023	4.24185421634183	4.19972677655286	4.22733927525617	4.39182525873854	0.837106251955263	0.0927597601882728	0.405701265916025
Merged-chr17-35002408-2	chr17	35001908	35002908	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	MTD|LTR|ERVL-MaLR	1501.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	4.37228673490833	3.99900077385128	4.33396303057167	4.26515772503893	4.31479305112504	4.67594633972086	0.474298315875952	0.325160916356884	0.717970213571373
Merged-chr5-124496599-1	chr5	124496099	124497099	+	543.0	f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	MLT1C|LTR|ERVL-MaLR	13444.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	3.7189787253225	3.53197533475436	3.75780713765735	3.46840718435651	3.28523190239258	3.3449914806128	-1.12728886829491	0.0564222957185487	0.306207321185557
Merged-chr15-12377024-3	chr15	12376554	12377554	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	55558.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	4.32533818338162	4.35035391011632	4.71822681746567	4.06575958539229	4.15345932143697	4.08151346432935	-0.978807063234153	0.0404787771167005	0.250746637278681
Merged-chr10-6718848-2	chr10	6718348	6719348	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-39745.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	3.96778819084608	3.53668943146424	3.48372142865663	3.57552581298563	3.41304492624001	3.37828163451235	-0.808541055622209	0.183674410997381	0.566988699323691
Merged-chr19-37206890-6	chr19	37206403	37207403	+	973.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164337)	promoter-TSS (NM_001164337)	568.0	NM_198300	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	7.31165604332134	7.51470948961276	7.42671650069471	7.73428122762107	7.78303828669252	7.51495165369019	0.390297363473634	0.0921360124320276	0.404323138894002
Merged-chr6-37430078-4	chr6	37429603	37430603	+	823.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	12045.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	3.89330354263885	3.90398791793997	3.64233697993725	3.88181392524708	3.96763759828961	3.7702706570893	0.172522970369731	0.745094591962852	0.936032341688524
Merged-chr15-73593087-3	chr15	73592576	73593576	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	3450.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.08731761649273	3.78347883778974	4.10787492850881	3.97760755726836	3.60446677434062	4.0392389737134	-0.360039223447685	0.507870796636977	0.839513705470194
Merged-chr12-100023441-2	chr12	100022941	100023941	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	B4A|SINE|B4	58942.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.83551238800736	4.61206174987038	4.63317789377225	4.36022745483518	4.18209781205593	4.57970345613709	-0.821151026692264	0.0633107526359054	0.327727287101306
Merged-chr1-131017357-4	chr1	131016858	131017858	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2487.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.0448442455289	3.96987919941578	3.86344429022215	4.38742021733547	4.2132941853207	4.44976045944628	1.0697709079101	0.0271298956850052	0.196212460683
Merged-chr13-113580486-4	chr13	113579998	113580998	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38066.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.34360924065928	4.58942385382024	4.3038798539575	4.39835485413783	4.3729983194707	4.07867252486702	-0.329266629088183	0.482206206769555	0.825427202167635
Merged-chr7-97210178-4	chr7	97209678	97210678	+	788.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	115786.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	6.72237663521128	6.72333149444102	6.55272013122588	6.97382020014722	6.92571256015219	6.91405348669208	0.409201311145057	0.100231289093041	0.42218868283572
Merged-chr13-90932914-1	chr13	90932414	90933414	+	988.6666869999999	f0_balb.idr	Intergenic	Intergenic	9792.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	3.10787844214771	3.04639513147086	3.41386880715798	2.70085083659837	2.59483284064125	2.81337024670242	-2.69040013687673	0.000881872375469217	0.016341460952728
Merged-chr3-95636658-2	chr3	95636158	95637158	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11678.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.94320105126762	7.23647915457184	7.3315443206188	7.11903835982103	7.35474237889611	7.08108774060118	0.0321737714616493	0.900657875860571	0.976900442352196
Merged-chr10-96332419-2	chr10	96331919	96332919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106212.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.68343746108282	7.71283433920666	7.74752671965617	7.80911914591544	7.88966429265612	7.81241666215219	0.181300071400524	0.393454034099858	0.771604147212602
Merged-chr7-75788449-2	chr7	75787926	75788926	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59912.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.9806003441924	6.16880167009069	6.1389079655246	6.08319971676259	6.38976520852509	6.09005560489194	0.184587395102057	0.532479405624286	0.851971173271146
Merged-chr19-43930662-4	chr19	43930121	43931121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9577.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	6.22546881420671	6.73314013092788	6.08580645468177	5.38742298777134	5.32682889906036	5.52359632064138	-1.74269588950888	3.07757499668564e-07	1.92020615999054e-05
Merged-chr1-171101859-2	chr1	171101355	171102355	+	796.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-CTG|tRNA|tRNA	-19806.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	3.2473132758374	3.38820907615117	3.18626297654066	3.14625982487026	3.12825699668896	3.42367424206115	-0.198991312785075	0.755072549225041	0.939216626504082
Merged-chr8-11249989-4	chr8	11249472	11250472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-62833.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	5.49583370132243	5.56831502304403	5.27422748112614	4.51086118532559	4.26944420437548	4.81626103947065	-2.06591009539632	5.75974797092584e-07	3.33278721701696e-05
Merged-chr11-4258929-4	chr11	4258435	4259435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	1367.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	2.31769977768744	2.34474908329953	2.57154189550002	2.29167535423442	2.15190193932879	2.20428760925189	-1.38798400362725	0.11721502457073	1
Merged-chr18-84680703-4	chr18	84680197	84681197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	1362.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	7.24139279829156	7.46892266453663	7.22190587772362	7.13978327455916	7.48261212700308	7.30276519282187	0.00152540815615179	0.99510224460589	0.998961028701257
Merged-chr5-125433486-2	chr5	125432986	125433986	+	824.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_203319, intron 1 of 26)	intron (NM_203319, intron 1 of 26)	562.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	6.21340941009188	6.5893331588656	5.85649642389489	6.19137323138132	6.2279361717707	5.7808348968436	-0.294465046668296	0.394751599390577	0.772549593858718
Merged-chr13-43122807-4	chr13	43122305	43123305	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005748)	promoter-TSS (NM_001005748)	-34.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	5.26436069122281	5.2359268194489	4.74323434508495	4.60041692723454	4.68503563128145	4.49991635465875	-1.1401985764059	0.00680821798132521	0.0765848589685154
Merged-chr17-29164582-4	chr17	29164080	29165080	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360239, intron 16 of 21)	RMER15|LTR|ERVL	29524.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	3.95455286718465	3.9975393863286	3.48772968532819	3.17252626676948	3.01941579233902	3.32084317351406	-2.78097711376106	5.59513772074742e-05	0.00173199486409208
Merged-chr8-119339472-3	chr8	119338954	119339954	+	947.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5084.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.98645067440598	4.47233861325453	4.31968705437699	4.44366278413952	4.27540622224782	4.74143856957501	0.553692132945492	0.25901490526729	0.656586751129823
Merged-chr12-8523955-2	chr12	8523455	8524455	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15611.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	2.59275289181196	2.8195110848299	2.8108879163648	2.78513238594225	2.70583766381265	3.05685243595411	0.547184289076088	0.463917562419849	0.816038286358001
Merged-chr9-106366370-2	chr9	106365871	106366871	+	612.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2261.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.65836947009972	4.01058593932341	4.26783501203203	4.17493980810395	3.97224501460752	4.16224287697962	0.314317072447778	0.555415882935168	0.863239342468185
Merged-chr14-62328615-4	chr14	62328098	62329098	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	4.06784853097568	3.59085623354894	3.82753300326726	4.20061857199762	4.00626480224549	3.55390798939895	0.320595522532239	0.590410586222425	0.877218317361274
Merged-chr2-35111744-2	chr2	35111244	35112244	+	815.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 2 of 44)	exon (NM_012018, exon 2 of 44)	2252.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	3.98601721775038	3.84500595347562	3.43672103748316	3.38256423775394	3.1821791799375	3.62374884263117	-1.37491416969821	0.0310889377114348	0.213471634535112
Merged-chr10-127641984-4	chr10	127641496	127642496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-990.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	7.18086855721435	6.73096502870624	6.91014849256641	6.96253449703793	6.96126056059625	6.70703513795177	-0.103735108460991	0.702812741621328	0.922000148631826
Merged-chr1-45854062-2	chr1	45853562	45854562	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58896.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	3.96422959942303	4.45065890517093	4.3017930349828	4.05270385395306	3.80828638052338	4.32649471462722	-0.518740816502289	0.323910760235389	0.7171565430589
Merged-chr6-113837488-3	chr6	113836990	113837990	+	885.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 2 of 19)	MIRb|SINE|MIR	54049.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	3.29096202711631	3.04731720861283	3.20266809328687	3.05214642951119	3.15481024952166	3.03790811837281	-0.422061195929882	0.520472663599968	0.846479944374449
Merged-chr18-46370821-4	chr18	46370334	46371334	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58906.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	3.80106876129682	3.40242583884322	3.19797414137402	3.61408759390377	3.37998620051869	3.67813221826805	0.221433396013794	0.732951264498936	0.931985446585439
Merged-chr16-76321696-2	chr16	76321210	76322210	+	688.833374	f0_balb.idr|f0_c57.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	51339.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.69640024101354	4.34080916535669	4.20909782647094	4.28275107757822	4.63808203160721	4.08346661903682	0.664654510893765	0.229936504926529	0.625676336764664
Merged-chr2-22790532-4	chr2	22789995	22790995	+	929.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	16168.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.67033499272721	5.59635535813157	5.55032779347588	6.00516543332035	5.93777271509005	5.67129012440745	0.503101020848422	0.110901588672406	0.444841551070303
Merged-chr11-70469976-2	chr11	70469422	70470422	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9938.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	5.59675459782096	5.10861248961419	5.87759663809987	5.38767712792166	5.29992792210716	5.68227026063122	-0.185119215379579	0.635243191563056	0.896439353901449
Merged-chr7-25247999-2	chr7	25247499	25248499	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2759.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	4.17200461772517	3.74869850194963	4.11157346644345	4.11053950510471	4.1528691793023	4.51363082825289	0.680374112361026	0.187340936183224	0.572271506774537
Merged-chr19-41847445-6	chr19	41846906	41847906	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177603, exon 1 of 1)	exon (NM_177603, exon 1 of 1)	726.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	4.13838774026281	4.07731331694642	3.92301898361834	4.39099010683432	3.76988613716488	4.18990231062791	0.244413668998247	0.645819811982912	0.900747249687508
Merged-chr4-40971426-2	chr4	40970929	40971929	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001290448, intron 1 of 15)	CpG	486.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	8.17246578523945	8.39953421216343	8.08281097104787	8.20365007662959	8.19066105726869	8.18678660522666	-0.0511859817140696	0.812536389907601	0.95565222456686
Merged-chr16-33625740-3	chr16	33625221	33626221	+	702.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 8 of 11)	ORR1F|LTR|ERVL-MaLR	-58745.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.70100209005891	4.6261249432622	4.78422807588651	5.07174074945313	4.93271570995962	4.9247729864414	0.627521671544955	0.104709600528874	0.43183216362363
Merged-chr11-44470043-2	chr11	44469553	44470553	+	1000.0	f0_c57.idr|f1_balb.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	495.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	6.17375302022334	5.86600830112726	5.98201357146655	6.69167945126025	6.30728737360534	6.15925556945121	0.661811987725059	0.0341375368716987	0.226065751533649
Merged-chr5-137887063-2	chr5	137886563	137887563	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15305.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	2.86378688739966	2.5908973969537	3.03296285230872	2.8662743945506	2.61304653325957	2.75015203531029	-0.468721526014532	0.54114844112421	0.856765739682368
Merged-chr2-167503740-8	chr2	167503294	167504294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	CpG	351.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	8.09487141099807	8.08879367949443	8.03755171530379	8.04373071692743	7.93615306041416	8.01364694459685	-0.111042627434834	0.591350374580171	0.877565221474351
Merged-chr4-129812984-2	chr4	129812506	129813506	+	609.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-7473.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.31006687882089	4.85610795678773	4.91309189147807	5.71074331654691	5.21943344674471	5.16680281833823	0.692476971241415	0.088590509215253	0.395124308039385
Merged-chr3-19199287-4	chr3	19198808	19199808	+	960.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	11013.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	5.71063049980502	6.00465476712235	5.84612266475742	6.26952410394544	6.33876726164568	5.88265771159268	0.566333589687331	0.0724300657075267	0.353484205073927
Merged-chr16-21681993-2	chr16	21681493	21682493	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	RLTR30E_MM|LTR|ERV1	12672.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.25014280571322	3.2508858164075	3.38955375425671	3.22269625923513	3.31884030241677	3.35120673180334	0.0157154362361674	0.979403649789942	0.9952276838459
Merged-chr2-174473066-4	chr2	174472574	174473574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025531)	promoter-TSS (NM_025531)	-133.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	7.92121905488477	8.06056401481046	7.87279029599175	7.85779156352037	7.95644754536951	7.6580517184589	-0.171366035549088	0.445710951336509	0.80532261006706
Merged-chr1-74367772-3	chr1	74367289	74368289	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 8 of 10)	exon (NM_001033345, exon 8 of 10)	5681.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	7.19187156217568	7.13126906732109	7.36535156688765	7.06146779225643	7.38484101205015	7.33696950116448	0.0636437214030436	0.796870997574848	0.951565591283247
Merged-chr11-104289655-3	chr11	104289310	104290310	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038609, intron 3 of 11)	intron (NM_001038609, intron 3 of 11)	58374.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	2.31404527514019	2.17528480103818	2.26329123566831	2.42796355587371	2.20655531848782	2.46860059853219	0.778073915450273	0.365345329571407	1
Merged-chr15-100060990-2	chr15	100060490	100061490	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	22326.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.74458045275778	5.87933689875398	5.48362685441607	5.86010321040597	5.81061251082331	5.57809445480932	0.0688162118438516	0.833924786668351	0.961129638343139
Merged-chr6-124274410-2	chr6	124273910	124274910	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30241.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	5.72945867143961	5.69563678849024	5.99304510208527	5.74538522274942	5.73922777891665	6.03186658370415	0.0602176877268317	0.849931460363575	0.964751339662129
Merged-chr1-166940359-1	chr1	166939859	166940859	+	560.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	59371.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	2.03044583744683	2.10255734813588	2.5393121177689	2.49398831508698	2.30711678023925	2.49038151693475	1.23656397243525	0.204882427145241	1
Merged-chr7-42505770-4	chr7	42505249	42506249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309388)	promoter-TSS (NM_001309388)	4.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	5.4534689602223	6.09021468980736	5.75338989292869	6.12531889234957	6.17814744400129	5.94269039600331	0.508973541708418	0.133785921270931	0.48906330450363
Merged-chr7-121981646-4	chr7	121981099	121982099	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033318)	promoter-TSS (NM_001033318)	94.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	6.40951261307	6.61733498004802	6.02843902548625	6.08266333862743	6.13186431028889	6.20264932194941	-0.416345693150295	0.172119351286872	0.550728974500212
Merged-chr6-124829490-4	chr6	124828984	124829984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	0.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	7.5499434252015	7.83339634290859	7.52777641412885	7.78900689426676	8.08114437018109	7.57449128760571	0.275682956905563	0.279515048999846	0.677205609521119
Merged-chr18-69663674-4	chr18	69663159	69664159	+	805.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-261900.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	5.4518817805545	5.69567197229754	5.71369686803519	5.77852370916875	6.01035760993941	5.42744406876804	0.280972182828111	0.41805209503951	0.788473936634102
Merged-chr11-117706422-4	chr11	117705933	117706933	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	L1ME1|LINE|L1	52144.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	5.92514530333864	5.74285726039216	5.58268986698	5.50757263315737	5.92645673624201	5.78172573682435	-0.0168535871969117	0.959667795898218	0.990242512723989
Merged-chr12-52625197-1	chr12	52624697	52625697	+	1000.0	f0_balb.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-22875.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	3.5885014074924	3.84318428040118	3.72239643282139	3.80061780737611	4.1043314967728	4.2197030065791	1.01294652148165	0.0603644867073698	0.31808043885421
Merged-chr14-70784256-3	chr14	70783735	70784735	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9854.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.31436337169524	3.2610933720594	3.8254989362467	3.39868959451529	3.3783936847338	3.70840842444312	0.0521362187781889	0.934761007958356	0.985727536128156
Merged-chr19-44388645-4	chr19	44388153	44389153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19056.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	8.44882086303561	8.44023062173738	7.99634421109987	8.37796609582315	8.47044242601013	7.67035569346039	-0.122687100475583	0.673603873625739	0.911547474574722
Merged-chr12-102456611-4	chr12	102456086	102457086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-12548.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	7.73056264995287	7.61333256319457	7.4933854727757	7.51648304893569	7.97466789539722	7.59041453845241	0.14287920938814	0.568089521270227	0.868495285168263
Merged-chr7-63912173-4	chr7	63911695	63912695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4662.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.96338727234163	7.86505031840827	8.11133156132472	8.07447148681733	8.33434197504644	7.97320561819816	0.230694047335863	0.314784980817083	0.709090105815759
Merged-chr6-97814008-2	chr6	97813508	97814508	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	MTA_Mm|LTR|ERVL-MaLR	6950.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.70871869867653	5.46440480274879	5.81440500238942	5.7737999258747	6.11725034183	6.45218766650575	0.83325960631631	0.0152901920821471	0.134375401644624
Merged-chr5-66149375-7	chr5	66148879	66149879	+	765.195251	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B1F2|SINE|Alu	1599.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.91549907675062	6.24068586668998	5.98030387155971	6.22703693402611	6.26723560086859	6.19756503548107	0.293763617059623	0.315257573631434	0.709642964607719
Merged-chr1-75141677-4	chr1	75141154	75142154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356264)	promoter-TSS (NM_001356264)	37.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	7.8639469485229	8.44659007227618	8.15639181149146	7.99200507404179	8.21969495217324	8.01570123022569	-0.137897008884241	0.582575201804699	0.87378634860748
Merged-chr5-123138353-4	chr5	123137839	123138839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3854.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	7.83713193671059	7.84455987091436	7.70736510392526	7.91808088145784	7.94424929673385	7.95358444618299	0.195703641616353	0.355532110743769	0.74245490954367
Merged-chr1-136127568-2	chr1	136127068	136128068	+	933.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_046167)	TTS (NR_046167)	3615.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	5.83107937636004	5.99039467585601	5.54697846178638	6.01543050864665	6.00505471208411	5.72767060643028	0.204323019907606	0.529120722053594	0.850781213948781
Merged-chr2-38451209-4	chr2	38450709	38451709	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60488.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	2.23982663459923	2.20362849524628	2.4989994689105	2.0480924922554	2.06638055167314	2.26186819778127	-1.39534183784534	0.131500115642946	1
Merged-chr18-84675440-2	chr18	84674940	84675940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 5 of 11)	B3|SINE|B2	6619.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	2.69727256823007	2.5164722759929	2.9080741929687	2.65773589743018	2.47652151235939	2.92352359424407	-0.0984571575452493	0.902031786933378	0.977392189525306
Merged-chr14-54577569-4	chr14	54577058	54578058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010590, exon 1 of 8)	5' UTR (NM_010590, exon 1 of 8)	103.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	4.35817466915262	4.50067855092017	4.96885846540118	5.02449541456979	5.13706941333164	4.73924440474253	0.823274632976764	0.0621514736101528	0.323873664514751
Merged-chr14-62761284-4	chr14	62760788	62761788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008715)	promoter-TSS (NM_008715)	-176.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	7.89182362721838	7.84244274779117	7.67167280096748	7.62142308794478	7.75264266946668	7.76359948748403	-0.138769532018702	0.530182439432583	0.851070276054813
Merged-chr5-123141449-6	chr5	123140932	123141932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	-761.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	7.47198720630081	7.05220565137544	7.50045695773148	7.65461010661131	7.67654636448925	7.7896753388116	0.516424895564349	0.0381482107337571	0.241691763415713
Merged-chr6-39526987-4	chr6	39526509	39527509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30825.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	7.0557015247475	7.28997072839672	6.82970703156116	7.12736724015507	7.25693006078887	6.70737183656193	-0.0267085900786602	0.925600111013844	0.983230173300268
Merged-chr10-54120124-2	chr10	54119624	54120624	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR88b|LTR|Gypsy?	44202.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	7.10092629135247	6.82768251429668	6.61940080714349	6.7281227475165	6.82884582995814	6.91295678391285	-0.0788316937368589	0.770643999611318	0.943426354950912
Merged-chr11-118454013-4	chr11	118453524	118454524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045902, intron 1 of 2)	L1MB8|LINE|L1	971.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	7.82468896239723	7.86046287665996	7.5949777971095	7.43632788799554	7.77565695938772	7.49108838986445	-0.269976033085414	0.262056589994839	0.65993978704045
Merged-chr10-121496778-4	chr10	121496270	121497270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-20520.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.88931534381242	6.84950931808859	6.92447343223504	6.35711635454879	6.45851668848689	6.50068322964822	-0.708687917756252	0.00530454986296323	0.0637391370676337
Merged-chr15-6567507-2	chr15	6567007	6568007	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.13535271847386	5.86994565156436	6.56333484169839	6.47119295558402	6.16080062371265	6.52499616270589	0.29728613376527	0.365651565276001	0.75071889665134
Merged-chr15-57037339-4	chr15	57036853	57037853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227808.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	4.7445101418248	4.85670162976928	4.72691624740292	4.20336594023306	4.29406660867204	4.55674000886081	-1.06444602163907	0.0138008950185097	0.125529610045929
Merged-chr7-90031735-2	chr7	90031235	90032235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	2576.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.12028472433157	7.27964124943338	7.29669278017697	7.42698243081557	7.86001971558725	7.36534903028733	0.512005460373649	0.0480880405206048	0.27804250403992
Merged-chr11-68901482-4	chr11	68900963	68901963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-103.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	6.67282447256574	6.70656203263049	6.22173580791952	6.35588432664874	6.6526122740398	5.96963573396684	-0.305076597961824	0.354727567646955	0.741848255752265
Merged-chr10-37236139-4	chr10	37235645	37236645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97219.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.66533945059934	6.79126818504493	6.82236277151387	6.45275294615981	6.77886994986063	6.77746856400824	-0.125154554175554	0.637740284529345	0.897370270827574
Merged-chr15-58692046-4	chr15	58691541	58692541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	131386.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.0123396626765	5.03465132550274	5.04300321348509	4.84635443886058	5.01191630703445	4.89200096029765	-0.227410305306303	0.54226059619169	0.857067349203709
Merged-chr14-121877581-4	chr14	121877075	121878075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130999, intron 1 of 1)	intron (NR_130999, intron 1 of 1)	695.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	5.83320955140947	5.45169701574425	5.32884583624625	6.1690155520285	5.56581736840269	5.36039936769556	0.345320776328653	0.385256745221569	0.76632598385057
Merged-chr17-35215197-2	chr17	35214697	35215697	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9846.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	5.50717678010898	5.18430574349429	5.14744714378161	5.12976437706996	5.23655994204811	5.46079870248319	-0.042192274649391	0.908428183183644	0.979259582109985
Merged-chr12-80855506-3	chr12	80855010	80856010	+	604.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	64978.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.29958950843585	5.08033758196997	5.17385190648069	5.30465777426487	5.02840383547566	5.33244906438603	0.0637863807368503	0.861074202454827	0.967789299492425
Merged-chr7-100499963-3	chr7	100499466	100500466	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011671)	TTS (NM_011671)	6608.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.70195576091477	5.65815307087535	5.64588898284051	5.79811824598579	5.78545096197259	5.95658793784011	0.312363858406013	0.308345746727344	0.704435206887286
Merged-chr12-102704266-6	chr12	102703766	102704766	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	603.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	5.38160396494521	5.81034654714323	5.84291269382631	5.84494302325945	5.75157790718783	6.12223164668873	0.389065078015117	0.252103817039188	0.649632907970228
Merged-chr6-117891626-4	chr6	117891117	117892117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8723.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	3.80826591509206	3.61471921633675	3.71000140988167	4.13973817361432	3.77400808073659	3.67104102079708	0.534474439327573	0.334263515265057	0.724882663975632
Merged-chr8-47690799-4	chr8	47690295	47691295	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15636.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	6.03110739866962	6.36077813265348	6.3626048477029	5.94367819197987	6.01742666413268	6.29184825590815	-0.292537196159854	0.334780463838684	0.725198429760335
Merged-chr10-13473944-2	chr10	13473444	13474444	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	CpG	452.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	3.68160594912788	3.25592075395771	3.25892722441275	3.31701449359471	3.24452649503989	3.80498742682	0.207114719047694	0.756097349870769	0.939527320894303
Merged-chr13-37854231-10	chr13	37853709	37854709	+	962.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	26816.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.74657748289746	6.830930903129	6.83228778464598	6.8251971413981	6.96874792501436	6.68785062991847	0.060404139553521	0.811728485159426	0.955306974300267
Merged-chr6-26220025-4	chr6	26219485	26220485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	288559.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	4.07605950800892	3.93289190870581	4.0061892332323	3.79701006170825	3.97439471291702	4.12076423048724	-0.11943945852317	0.812396248877945	0.955568440884863
Merged-chr13-100145328-4	chr13	100144834	100145834	+	960.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 15 of 15)	intron (NM_001126182, intron 15 of 15)	20479.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	4.73328469318479	4.63767654759873	5.20654909180224	4.8678983027637	4.62048795698677	4.9198708901315	-0.1534008720261	0.720924126351427	0.928324696220711
Merged-chr15-101261051-2	chr15	101260551	101261551	+	813.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5795.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	2.90208572361706	2.89303975731073	3.25276609355168	3.27423888178566	2.84062309706291	3.15809453910024	0.355058851291506	0.618561976220664	0.889457395650025
Merged-chr2-172406339-4	chr2	172405836	172406836	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	12542.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	4.84979153803859	4.58775711400014	4.39922368941158	4.48519922930341	4.47227940660773	5.03645963228163	0.115621027612977	0.80418933254884	0.953600025427277
Merged-chr3-101603408-2	chr3	101602908	101603908	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	1299.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	6.77242915241459	6.97674886384393	6.69303114386953	7.01175899585612	7.34027066040584	7.36753775388196	0.642159063846708	0.0141277957910183	0.127610250996423
Merged-chr8-84701384-4	chr8	84700872	84701872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008535)	promoter-TSS (NM_008535)	-85.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.25070402915193	6.15449483056973	6.1170813899794	5.82044171371354	5.66859852956488	5.72012613681082	-0.774760055631919	0.00861165594586472	0.0908301011463445
Merged-chr11-61499355-4	chr11	61498863	61499863	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5097.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	6.73486174480969	6.84255204614058	6.69633488129034	7.01127612923349	6.92340758509156	6.70595789060365	0.20163169568126	0.430257594302505	0.796158825510326
Merged-chr5-64323688-2	chr5	64323188	64324188	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	93331.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.61208446924934	3.67794434442947	3.81668089363067	3.35309049544253	3.26842362808783	3.47939589392737	-1.26187718249699	0.0316415812853731	0.215615734158424
Merged-chr2-20967382-3	chr2	20966903	20967903	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081364, exon 1 of 24)	exon (NM_001081364, exon 1 of 24)	318.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	4.64123777303546	4.56201464193024	4.31384373593788	4.62754816318824	4.40010952389044	4.47433471008626	-0.0500906499540343	0.90914540720251	0.979384717565381
Merged-chr16-15956607-4	chr16	15956122	15957122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	69336.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	4.99933974184333	5.05514648066683	4.94122638627398	5.05176127492245	5.2612662538266	4.93150092990706	0.207611088924952	0.580153069090316	0.87276422265422
Merged-chr11-119258681-3	chr11	119258231	119259231	+	861.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 16 of 18)	MLT2B2|LTR|ERVL	-9232.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	5.56440840602491	5.77992138380378	5.5036463863172	5.29166157795558	5.49820220444284	4.89885684412643	-0.681464732653214	0.0720240134887728	0.352439618930124
Merged-chr7-44814831-2	chr7	44814394	44815394	+	872.400024	f1_balb.idr|f1_c57bl6.idr	intron (NR_033136, intron 2 of 2)	L2a|LINE|L2	764.0	NM_030693	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	2.86612401842933	2.75102565574596	3.27750359387338	3.08970361461794	2.7395836438989	3.34809924970408	0.433178312719722	0.572511429337344	0.869840399318717
Merged-chr7-16843870-3	chr7	16843370	16844370	+	680.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	805.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	3.71050457387308	3.83107835777061	3.76872309440484	3.66559992000326	3.7598177464379	4.029113717753	0.154390516860764	0.773177082335841	0.943985776895772
Merged-chr5-36730895-4	chr5	36730388	36731388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17791.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	4.41664546129387	4.25172392411655	4.15716532245867	4.6751987834479	3.94997015896364	4.17821054300945	0.0628829740288936	0.903662080013539	0.977858102400597
Merged-chr8-126921463-2	chr8	126920963	126921963	+	898.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	24458.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	4.92051600462141	4.52834234096216	4.61159016112032	4.68634040511799	4.88639422164879	4.50424284987926	0.0247167437822943	0.954672025608241	0.989617250984245
Merged-chr2-68862270-4	chr2	68861865	68862865	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	924.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	6.38727444392108	6.49279469329765	6.361773682025	6.55189818693821	6.5721513276249	6.45936879018658	0.184277844364394	0.484192947131133	0.826727999240278
Merged-chr4-129640937-7	chr4	129640423	129641423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005506)	promoter-TSS (NM_001005506)	-118.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	6.1709830041023	6.20347334635341	6.34549815188896	6.09803464769678	6.37934212540525	6.07531604681962	-0.0563562595756492	0.84616113652823	0.963961283421434
Merged-chr16-20301928-4	chr16	20301428	20302428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005767, intron 1 of 9)	intron (NM_001005767, intron 1 of 9)	434.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	6.69696685731093	6.69820671947116	6.93624911184229	6.68921157229027	6.61759762498218	6.73608724742974	-0.151323589227364	0.556213038670732	0.86357390983939
Merged-chr11-3427844-4	chr11	3427360	3428360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290473, intron 2 of 5)	intron (NM_001290473, intron 2 of 5)	-18622.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	3.81137281891275	3.42926335697549	3.73727555270856	3.7000069228365	3.41513292592126	3.99493852313016	0.162946999261008	0.786655386513208	0.94854176244426
Merged-chr17-71001294-2	chr17	71000794	71001794	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	1239.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	6.56065593952896	6.92921452304611	6.77833659747337	6.78838586991442	7.33532628228258	6.82167663621271	0.388953147458373	0.186439481016638	0.57102482257315
Merged-chr1-88288464-2	chr1	88287964	88288964	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10885.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	4.12017910397597	4.5503523687765	3.92038757024763	4.21040897967583	3.94901875790692	4.69067998843734	0.225400230418344	0.687771966634576	0.917193226920892
Merged-chr13-49193971-2	chr13	49193471	49194471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 2 of 3)	intron (NM_013610, intron 2 of 3)	6424.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	4.82129841475822	5.00301462470786	5.61727346501007	5.15723194647014	5.12138199285797	5.47635949162784	0.14879470052833	0.725075395251724	0.929505969181878
Merged-chr19-29403151-4	chr19	29402661	29403661	+	815.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7758.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.61264545638961	4.81885163336244	5.24789358485184	4.95798598973453	4.87939458801561	5.1919178630104	0.220798482491466	0.599416958587635	0.880988559193131
Merged-chr2-26119826-4	chr2	26119337	26120337	+	849.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	intron (NM_026495, intron 1 of 5)	2974.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	2.87602740899831	3.00780892773844	2.90996634375125	2.78009010914134	2.82305326043262	2.66549558044825	-0.866966139504376	0.2346947405579	0.630784177826417
Merged-chr16-32599445-3	chr16	32598947	32599947	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9449.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	4.84879498271381	4.91163732579903	5.14373839714104	5.04191752005411	4.8550260312346	5.07752657288257	0.0501103536940048	0.895917069520427	0.97569173539301
Merged-chr17-79020614-6	chr17	79020084	79021084	+	866.544434	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 1 of 18)	CpG	232.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	3.73465440830507	3.26863824900747	3.65628834308842	3.41341340375689	3.17785797973132	3.40854375386293	-0.881837068763785	0.162067151993176	0.535342738509256
Merged-chr18-34223697-6	chr18	34223206	34224206	+	976.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1934.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	6.46799110060903	6.15154230720968	5.94872129530634	6.1658763538614	6.55959526287888	5.76712480119585	0.0101939584807246	0.97708494723187	0.994771164142869
Merged-chr2-3499422-3	chr2	3498935	3499935	+	681.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015765, intron 6 of 13)	intron (NM_015765, intron 6 of 13)	13379.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	3.39531415079458	3.5976307762251	3.73276506097316	3.67331640969831	3.328633810909	3.54518175330076	-0.207410172165963	0.726820727824626	0.930054055622982
Merged-chr15-8099262-4	chr15	8098751	8099751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081402)	promoter-TSS (NM_001081402)	-42.0	NM_001081402	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	7.06052689194936	7.21658097952574	6.8751662752668	6.95007161496377	6.99741104210714	7.16046254670811	-0.0485240103595813	0.847459918716566	0.964318271116593
Merged-chr16-37870856-2	chr16	37870356	37871356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	B4A|SINE|B4	2456.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	5.26457117725968	5.27763240853898	4.86906859522451	5.19444172611565	5.16122537872065	5.35311233245219	0.140304930678123	0.70711230563284	0.923220759150193
Merged-chr12-79630434-4	chr12	79629938	79630938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	294295.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	7.48312026397291	7.49176894613771	7.22439102726994	7.28806241047037	7.65047105812748	7.36292563363656	0.057824381492681	0.816753376947816	0.956754861188725
Merged-chr9-104232167-4	chr9	104231650	104232650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30780.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.93995507411737	6.06296495126129	5.95951002345422	6.33837665473534	6.47151374035257	5.78615946235456	0.435244098373974	0.181003601914708	0.563236638299139
Merged-chr3-8957861-4	chr3	8957366	8958366	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	6280.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.55887950748614	3.54277138716153	3.46471749652935	3.5194562708563	3.52629189747256	3.59027516004141	0.0651133197200665	0.907933546583902	0.979071516420527
Merged-chr1-85277816-1	chr1	85277316	85278316	+	1000.0	f1_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7250.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.68761468730908	4.17571857318598	4.41408746618886	3.23622113116387	3.04379473015524	4.68278921126864	-0.441762592232992	0.861212343335103	0.967789299492425
Merged-chr11-79871005-1	chr11	79870505	79871505	+	1000.0	f0_c57.idr	Intergenic	Intergenic	91382.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	8.98253658964673	9.14146449645533	8.5157433230985	8.84629516261336	9.33192100192335	8.45347975085985	0.0342340829786017	0.908369435327044	0.979259582109985
Merged-chr13-47259546-2	chr13	47259046	47260046	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65543.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	3.86420119505309	4.71545153363828	4.44380916330896	3.83522821042683	3.91029695936365	4.30383307044099	-0.990425520927354	0.0796551722105979	0.373237277244027
Merged-chr2-72464521-4	chr2	72464043	72465043	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16C|LTR|ERVK	-11676.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	4.15519857211811	3.7716413920721	3.91829694922702	4.33445690955098	4.0822833598143	4.18467082300522	0.694990860430965	0.170893302250085	0.548768520130638
Merged-chr2-28592288-2	chr2	28591788	28592788	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9009.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	4.24144119129507	3.89853604471548	3.84076562511965	3.85969838554397	3.88855080038518	4.06060471955372	-0.235241624301122	0.651825179097318	0.902896807825606
Merged-chr9-101075462-4	chr9	101074973	101075973	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	CpG	711.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	7.61164187956925	8.00003669761619	7.7288480976894	7.72584258356816	7.957243534059	7.92481795021999	0.114281714188693	0.63117579083335	0.895063064307722
Merged-chr18-50025419-2	chr18	50024919	50025919	+	847.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-5565.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.0770671426967	3.10919305393109	3.00515207763566	3.19589219663412	3.04396528385834	3.19621649333818	0.336093438726149	0.605535907753832	0.883581756351046
Merged-chr16-31201320-4	chr16	31200828	31201828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030138)	promoter-TSS (NM_030138)	-90.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	7.3831811477171	7.57198643300686	7.56844733713044	7.24246150612565	7.69684907322763	7.69754147916811	0.0793329513500293	0.753660931503426	0.938570691167124
Merged-chr15-79326716-2	chr15	79326216	79327216	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	B2_Mm2|SINE|B2	1655.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	3.98330621816681	3.6697472167763	3.54811045559777	3.65275438706132	3.6308130988472	3.83370241297705	-0.166325025575928	0.768428392997189	0.942871018290895
Merged-chr4-118144520-4	chr4	118144014	118145014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 16 of 21)	intron (NM_001161823, intron 16 of 21)	-9568.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.18336623053239	7.07999937702642	7.08623731394323	7.21115355809058	7.02766766736569	7.01160206187804	-0.0469371956655872	0.844757110862297	0.96373428957366
Merged-chr4-136309939-3	chr4	136309433	136310433	+	804.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-1009.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	3.87061479171097	3.72670154533138	3.85940527301257	3.89937977413774	4.12589147908204	4.02709598154877	0.634154062707476	0.212383328530544	0.604853065009053
Merged-chr11-8535051-4	chr11	8534571	8535571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 10 of 30)	intron (NM_001083587, intron 10 of 30)	129464.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.30271281094922	2.16605750105547	2.14674379902405	2.40730625222343	2.34480762742864	2.6622544457121	1.83766403287339	0.043922305732955	1
Merged-chr1-36068235-4	chr1	36067753	36068753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015818)	promoter-TSS (NM_015818)	-147.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.66561047498288	6.39249042973973	6.51670860062716	6.40818054202841	6.25300848434022	6.23143230510757	-0.374009669472044	0.175173818205766	0.554890477587384
Merged-chr9-65214669-2	chr9	65214169	65215169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177460)	promoter-TSS (NM_177460)	-21.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	6.56000618091273	6.77188247412161	6.5662174311275	5.82148515093223	5.90449621635867	6.13362118310934	-1.14705220625105	5.75460268964416e-05	0.00177194211168869
Merged-chr10-43996408-4	chr10	43995900	43996900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	8446.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	7.53462348824773	7.42899423326786	6.97634531985185	7.37153367687137	7.61936520070242	7.22386588038306	0.114079495683806	0.676956381219332	0.912626330986626
Merged-chr15-89172682-4	chr15	89172195	89173195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1256.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	6.56651805933462	6.77608909325883	6.67053902106584	6.60651949606023	6.72806595409687	6.68093214711976	-0.000860936341276744	0.997330461432031	0.999438741884046
Merged-chr17-55712647-4	chr17	55712156	55713156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028370)	promoter-TSS (NM_028370)	-20.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	6.31259618658319	6.03259803814391	6.32655670426229	6.13926884291965	6.22278773924416	6.22969540962938	-0.0466476037348635	0.870808606038167	0.970222087171093
Merged-chr10-94525136-4	chr10	94524631	94525631	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	10274.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.06369098917759	5.00135788054837	4.81133971701345	5.16486217690477	5.29046834665378	4.75383107065417	0.286992811083157	0.474708649060121	0.821664499521211
Merged-chr13-63278954-4	chr13	63278467	63279467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18180.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	5.58351313926557	5.8502396428565	5.52819649016451	5.07460415120404	5.03603883993039	5.11474154998645	-1.17839810057981	0.000708585299354773	0.0137938411017294
Merged-chr9-13304237-4	chr9	13303741	13304741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57285.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	6.31746101306818	6.33191895964918	6.28280651768374	6.15595392810891	6.46956282295633	6.15420410460612	-0.0525441735859497	0.853936383776245	0.96587152343171
Merged-chr10-119152705-4	chr10	119152218	119153218	+	743.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59813.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	3.16263703038413	3.10080517110683	2.75365752057817	3.00391135507773	2.72237152139783	3.02108981767105	-0.474773287736853	0.526198046710649	0.849338088345222
Merged-chr16-56075954-4	chr16	56075416	56076416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 3 of 24)	CpG	436.0	NM_001304503	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	7.12807631019742	7.02657514153587	6.92914877004499	7.06248915096818	7.08623268098356	6.97312239177959	0.0149082200621969	0.950642807392215	0.988462504713506
Merged-chr14-40919696-4	chr14	40919198	40920198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	-26733.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	5.39985276902461	5.23574386347598	5.2953806507826	4.82493892598477	5.24496478157606	5.50206131455442	-0.197926763846448	0.609391473449516	0.88517286252283
Merged-chr17-87734880-4	chr17	87734392	87735392	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	62335.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	2.62366687772884	2.41402045421502	2.48657543111188	2.83164498088404	2.76318390280241	2.75783792761719	1.55905100534791	0.0496899697948565	1
Merged-chr6-72162779-3	chr6	72162270	72163270	+	899.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39573.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	7.59264847226752	7.56095581884876	7.46638490502588	7.47176616504825	7.7401537693944	7.23983819221533	-0.0461157908406107	0.853150778682355	0.965599852996565
Merged-chr18-31760519-3	chr18	31760038	31761038	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-78.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	7.36595412710138	7.4326195354036	7.39692431543497	7.45758458045922	7.36441408476339	7.55446172954369	0.0841707575023477	0.709599596903973	0.92401439884764
Merged-chr15-98513045-4	chr15	98512533	98513533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6801.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	7.34573753995909	7.45513304070048	7.27250298717837	7.45515200373953	7.77689304903767	7.22048035803134	0.22493182257791	0.385318219727975	0.766341662207074
Merged-chr16-33927792-3	chr16	33927284	33928284	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	39254.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.11311900063141	3.96895838853688	4.2489706107931	4.07284494010028	4.01369042124844	4.04314429762102	-0.190539074108534	0.694651560543444	0.919217788511748
Merged-chr3-135517079-3	chr3	135516571	135517571	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027288, intron 4 of 16)	MLT1F2|LTR|ERVL-MaLR	31460.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	3.69441335735714	3.61172490119188	3.23678622129193	2.93889081672044	2.91999659490382	3.05961186248187	-2.59292920447185	0.000333349960908135	0.00760136572958183
Merged-chr4-62287631-4	chr4	62287141	62288141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	1212.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	5.92392626308271	5.9747266971362	6.29813545730365	6.46639263578639	6.67178995633176	6.31909874330982	0.728892571379433	0.0137803483243574	0.125424986148888
Merged-chr13-95888849-4	chr13	95888327	95889327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	3095.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	8.2348895296366	8.29180011387377	7.98561102440835	8.17189510264206	8.42687953150875	7.79116578684537	-0.0222900544224179	0.930923141513282	0.984710127493703
Merged-chr19-6361696-2	chr19	6361196	6362196	+	890.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1994.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	3.31914654936295	3.36235058635691	3.17183415258622	3.19043421299817	3.30833295707388	3.52219081854452	0.201226484009826	0.747857432979824	0.936825865400837
Merged-chr15-84994635-4	chr15	84994098	84995098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-6627.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.66588512985668	6.97582262699211	6.90318165917141	6.87465532923885	6.88588782588798	6.81585084292191	0.0110120582417817	0.965573558011223	0.991995030766812
Merged-chr5-77266135-7	chr5	77265630	77266630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	CpG	636.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	7.03865185144437	6.98434213642112	7.22901946217952	7.10443389018989	6.64369769058918	6.86292027532403	-0.309116771528613	0.249067841449855	0.646003458475719
Merged-chr16-78204968-4	chr16	78204436	78205436	+	841.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TA)n|Simple_repeat|Simple_repeat	50518.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.68298970834754	3.41288416276331	3.57303847576574	3.77835547277032	3.75885099474447	3.41332568139064	0.368894797270631	0.529267238014134	0.850847288056475
Merged-chr4-126156823-2	chr4	126156323	126157323	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	B3|SINE|B2	5842.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	4.30706120282377	4.18146638980879	4.5436051762097	4.53728055804414	4.35417570464537	4.4468602252097	0.268239960390004	0.551784857182606	0.861486338239052
Merged-chr4-137866383-4	chr4	137865875	137866875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	4138.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.06585220974157	3.88770683720839	3.69746175237918	3.42751714081259	3.50485520097415	3.60448075491479	-1.33117726318785	0.0188614462175288	0.155432161016447
Merged-chr3-88593434-4	chr3	88592936	88593936	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13828.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	4.82300208653163	5.03019313468276	5.33120542823425	4.67559137553275	4.82078554844843	5.10169897716884	-0.438919610171303	0.288105370456339	0.685470620286924
Merged-chr4-129821453-4	chr4	129820958	129821958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	750.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.95902059193203	8.10784797570527	7.51093790734293	8.04941167040242	8.29429836972467	7.63015158779527	0.194735223183109	0.494898407067195	0.832153667472614
Merged-chr13-75796164-4	chr13	75795602	75796602	+	800.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43783.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.46279320862867	3.76551485323139	3.6593081219222	3.88476756522396	3.76001297014507	4.24173463000123	1.06684409965086	0.0596748257447692	0.316235875878998
Merged-chr3-95111146-4	chr3	95110661	95111661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009336, exon 1 of 6)	exon (NM_009336, exon 1 of 6)	119.0	NM_009336	21427.0	Mm.133919	NM_009336	ENSMUSG00000008958	Vps72	Tcfl1|YL-1	vacuolar protein sorting 72	protein-coding	6.53526886584225	6.31859116140518	6.57875756225443	6.71170842702759	6.76737019314578	6.7188386252349	0.410313886947937	0.116963936769867	0.45670273349353
Merged-chr12-70136600-4	chr12	70136096	70137096	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17575.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	5.9991257201728	6.36750128410881	5.88666997752009	5.71078604266189	5.36689649657634	5.37516833575713	-1.10491303618869	0.0012022670272707	0.0207763727528848
Merged-chr2-75699513-2	chr2	75699013	75700013	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	5150.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.88727233422404	4.68378054483461	4.92618921941485	5.21177904379897	4.94262912060993	5.06152159202886	0.528827203884637	0.170020847911648	0.547289560416266
Merged-chr11-22632109-4	chr11	22631614	22632614	+	917.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119831.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.9637692228638	5.44691115211832	5.1032133792656	5.41751363941941	4.98388009092877	4.90765523227012	-0.13769965314654	0.735538610111397	0.932744628746236
Merged-chr8-82875411-2	chr8	82874900	82875900	+	714.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	12044.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.52049567234629	3.35125566974421	3.66163695606282	3.34193050181758	3.70096747812881	3.52291471102	0.0880905165635957	0.88308336550557	0.973347392063704
Merged-chr7-116530463-2	chr7	116529963	116530963	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	intron (NM_001360375, intron 11 of 14)	26094.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.1269665181306	4.06789466614272	4.3725668837764	3.89253195572641	3.9089266759837	4.4381203367915	-0.269055764112368	0.60547344212105	0.883581756351046
Merged-chr17-26235561-4	chr17	26235145	26236145	+	944.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8597.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.22793114088232	7.15671016191993	7.3897721511035	7.82265839980848	8.23627337639292	7.18299990605037	0.828917228656452	0.00799236035389952	0.0860432703621096
Merged-chr17-84270311-4	chr17	84269831	84270831	+	832.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	B1_Mus1|SINE|Alu	-82384.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.92485863458334	5.47520515988888	5.39413151835686	5.24208758831558	5.66351386762727	5.23724328507263	0.239332503637693	0.544009452405939	0.857551302506722
Merged-chr10-69250565-3	chr10	69250066	69251066	+	615.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	37372.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.80579486235978	4.79043915703347	4.87306550318474	4.83614799271645	4.93236697567131	4.93797102363682	0.185131914379901	0.627316334719161	0.893185105737713
Merged-chr4-83234735-4	chr4	83234262	83235262	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	89427.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.47803542474589	5.50151398597708	5.39354214395571	5.82403071037276	6.17270355039539	5.69604011538883	0.849957190073644	0.0106717312643707	0.105210120266085
Merged-chr3-31129627-2	chr3	31129127	31130127	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20293.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	4.02262328223857	3.81167573266402	3.92276280320848	3.840174067413	3.97850872649457	4.03968278148609	0.0975962014235464	0.847202296406957	0.964181639106262
Merged-chr2-154890947-1	chr2	154890447	154891447	+	852.0	f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	B1_Mm|SINE|Alu	1959.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	5.05138805097021	4.90306503337021	4.53556992219481	5.11688734502868	4.80300655998456	4.69466527111233	0.0632720320137636	0.882607122774712	0.97322373493158
Merged-chr2-25365207-4	chr2	25364713	25365713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149315, intron 1 of 8)	CpG	450.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	7.50152680959652	7.8892800869935	7.41218030546919	7.10044817209253	7.36560430064413	7.20439885449339	-0.577780431449709	0.0260797873315497	0.191649469600246
Merged-chr4-15269032-4	chr4	15268408	15269408	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3088.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	5.90761581249194	6.06897349451748	5.68842132109025	5.39360832191562	5.56504198201641	5.46059586118211	-0.784240090089152	0.0163569164554022	0.141097481279401
Merged-chr1-162005434-5	chr1	162004940	162005940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040562, exon 2 of 3)	non-coding (NR_040562, exon 2 of 3)	471.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	7.14071084054063	7.31220676863127	7.08691771141833	7.48852626581057	7.62060290262477	7.48047996473414	0.511087510241518	0.028758597146434	0.203274324784275
Merged-chr1-138957277-2	chr1	138956777	138957777	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6432.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	3.14583632993899	3.14449764362639	3.01629208377066	3.12666019525437	3.12279078086933	3.14916167756691	0.107775047891126	0.867255642631819	0.96931826298411
Merged-chr5-113774642-2	chr5	113774142	113775142	+	798.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 2 of 4)	intron (NM_025526, intron 2 of 4)	1830.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	6.26795811510519	5.90737505489311	6.35874744516329	6.53875591332739	6.50130189225345	6.39975557482264	0.49514115672002	0.0895387232948515	0.397584614329367
Merged-chr14-27229587-3	chr14	27229115	27230115	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-8395.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.73904772737438	4.14358826446953	3.97508241780415	3.82637517755677	4.0609983918194	4.19628897119128	-0.830371035009167	0.130380930288668	0.482568746844423
Merged-chr16-91352260-4	chr16	91351726	91352726	+	919.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20557.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.69132502009026	4.79082852452369	4.59322336532836	4.18486721321338	4.20643120038033	4.36137985283099	-1.15595602804654	0.008125654955612	0.0869834100031606
Merged-chr6-146578768-4	chr6	146578261	146579261	+	925.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	850.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	6.45989883285903	6.70676614330095	6.59557406160523	6.80645100826941	6.94396072023433	6.62039864151913	0.338409590636204	0.205330370275927	0.596047563330878
Merged-chr11-62541744-4	chr11	62541239	62542239	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-2478.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	6.04986528585453	5.42489276197975	5.36357638265736	5.57108129141071	5.52991948826358	5.39575912078507	-0.296759655877653	0.430213079163288	0.796150673085838
Merged-chr1-136677173-2	chr1	136676673	136677673	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6223.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	3.97224830663636	3.95715675853399	3.8411784120277	3.7350121763942	3.843025037502	4.00857073598044	-0.208381647712955	0.685260097054015	0.916203803074919
Merged-chr15-62046486-4	chr15	62045994	62046994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	7237.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.24065484011767	6.39583126291197	6.26990736411436	6.31148504418398	6.70980276211774	6.15874447226362	0.204515179490384	0.49866756605299	0.834016016484839
Merged-chr11-117803453-4	chr11	117802959	117803959	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029964, intron 3 of 5)	MIRb|SINE|MIR	5799.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	4.57496297508546	4.34234894077976	4.74116345273099	4.76256497150422	4.53887918549094	4.91215548687616	0.437315454874485	0.314298886821071	0.708700303644741
Merged-chr8-119824999-4	chr8	119824495	119825495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	15584.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.08446972065811	7.261912718854	6.96412196902768	6.92740504614591	7.23658772321138	6.84616977260388	-0.13634907358925	0.605537184823066	0.883581756351046
Merged-chr10-21077253-4	chr10	21076756	21077756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177776, intron 6 of 6)	intron (NM_001177776, intron 6 of 6)	36436.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	6.01008772073967	6.06394888701046	5.95364097597284	5.95734484754644	5.66628736508929	5.62402547207837	-0.447312707028318	0.147937160856973	0.51321776824834
Merged-chr11-3964935-4	chr11	3964433	3965433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	958.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	6.30237703557285	6.45959417327168	6.20823176852844	6.35546778364664	6.57507164484667	6.48348917415045	0.233017499654219	0.398681809409419	0.775353885645412
Merged-chr5-125175819-2	chr5	125175319	125176319	+	802.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	3395.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	2.55256023164001	2.4467957140363	2.80447193378312	2.51022688020247	2.40337229133487	2.3798999419943	-1.031170008464	0.211471112315517	1
Merged-chr1-34473609-2	chr1	34473109	34474109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011206, exon 15 of 15)	exon (NM_011206, exon 15 of 15)	13863.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.74212041471749	5.89977886933056	5.82578067937508	6.15489216461509	6.158227727231	6.0089755384865	0.504060646865538	0.0863068826568259	0.3891526548233
Merged-chr19-5408623-7	chr19	5408104	5409104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	L2|LINE|L2	1789.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	8.51097841031723	7.93084955191389	7.92335947963881	8.37832126819113	8.64829681978639	7.66111402983309	0.202117778530927	0.530412588864316	0.851131459370965
Merged-chr8-75068068-2	chr8	75067568	75068568	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 14 of 15)	intron (NM_001136259, intron 14 of 15)	-25550.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.6162878582474	6.88951932575659	6.80467578064942	7.14272292222673	7.11675951557071	6.81726929575446	0.409563346512351	0.117094108448806	0.456953689888765
Merged-chr2-22758732-4	chr2	22758252	22759252	+	805.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15575.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.32162456848035	3.28655351626286	3.17798744130767	3.1816316698927	3.23633721457107	3.25009727758143	-0.18374056765926	0.76717798776694	0.942573703853445
Merged-chr1-193130749-2	chr1	193130249	193131249	+	611.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	-479.0	NR_151719	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	2.52704719302397	2.51865283850833	2.64211634312661	2.47142054714868	2.47039970738701	2.52883428969577	-0.431180580060218	0.579691701371787	1
Merged-chr6-146141425-4	chr6	146140920	146141920	+	780.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	207298.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	2.90360398078207	2.85794177568534	3.02836394932098	2.92784596648153	2.99452991927865	2.79679039972136	-0.0672169145179839	0.923388983708506	0.982699256056545
Merged-chr11-29374283-4	chr11	29373809	29374809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176841, exon 1 of 32)	5' UTR (NM_176841, exon 1 of 32)	137.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	6.41968399254643	6.82476395543908	6.86631234844895	6.71855718390355	6.63030115069247	6.43671794344727	-0.172319752214264	0.544083588395905	0.857551302506722
Merged-chr13-55202200-4	chr13	55201698	55202698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	7.4257795818014	7.59821186479204	7.29596711783287	7.41555742842946	7.78935452374217	7.20688248457887	0.080065932948901	0.764929824928891	0.942102569612401
Merged-chr15-98993224-4	chr15	98992716	98993716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7251.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	7.92418529448948	7.6956433002807	7.79322405103367	8.05988435637022	8.26817933621621	7.7712789724741	0.354953235854414	0.142361622011387	0.503715686878622
Merged-chr6-114460057-2	chr6	114459557	114460557	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317124, intron 1 of 1)	intron (NM_001317124, intron 1 of 1)	1535.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	3.07841417206928	2.93625480433383	3.10197237382043	3.34358589632971	3.14622940766861	3.28971103534322	0.964331605210913	0.138249668702934	0.496960021384664
Merged-chr3-69709874-1	chr3	69709374	69710374	+	567.0	f0_balb.idr	Intergenic	Intergenic	-12181.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	2.22024479314182	2.25380838694452	2.51729350971984	2.12250783726631	2.04951382670423	2.28020676400912	-1.31885399530432	0.149294616991057	1
Merged-chr7-101107253-2	chr7	101106742	101107742	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1533.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	3.77448991283866	3.75945011087755	4.32681486334602	3.84135373879464	3.57253384753866	4.3922649877597	0.0039870261291347	0.994792366840958	0.998961028701257
Merged-chr2-144337931-4	chr2	144337411	144338411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	5.581694241904	5.18759977578289	5.31402471099983	5.15093497849781	5.18149780240885	4.96148402459633	-0.535795022142058	0.14745925731789	0.512338818292416
Merged-chr16-15594458-4	chr16	15593954	15594954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023585)	promoter-TSS (NM_023585)	64.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	7.36751874805813	7.36647473253648	7.24696020707083	7.37640559927947	6.8437815696624	7.09491544836398	-0.313569927272063	0.232529599768825	0.628804775351458
Merged-chr11-70459052-2	chr11	70458552	70459552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	-381.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	8.07814953398738	8.17620486158138	7.86573365230792	8.13519090085827	8.36836968098749	8.09829726730062	0.224179604280926	0.322696064004604	0.71605919099688
Merged-chr18-84807824-4	chr18	84807329	84808329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43509.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	5.22960411542858	5.10653348849187	5.26643333503648	5.08385164236293	5.07268194813572	5.10244865110164	-0.235342994965452	0.508401721471275	0.839818423824339
Merged-chr4-41568569-4	chr4	41568087	41569087	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	940.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	5.04094536455155	4.95748741488527	5.0487015868781	6.25271043498234	6.29100054813977	6.06490073042541	2.24711436674046	6.01810693286173e-12	1.02613656079828e-09
Merged-chr3-142882106-4	chr3	142881654	142882654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178654)	promoter-TSS (NM_178654)	-150.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	7.94234315447716	7.94533965413852	7.70428695618837	7.87295191082112	7.82760764872666	7.85531794854253	-0.0332675312909288	0.878955386252293	0.972069683693405
Merged-chr8-70001868-4	chr8	70001317	70002317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-5433.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	8.26944786999872	8.40396497307327	8.2734002059136	8.16383016927479	8.70500970348314	8.08559339650798	0.0565560040256931	0.824640019867239	0.958596193929081
Merged-chr16-57455798-4	chr16	57455313	57456313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-93429.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.93808929001884	2.91747440221353	2.7891579744147	3.09273847830067	2.75018740175153	3.04837032470162	0.392952212961148	0.584292621364552	0.874561879083458
Merged-chr16-15954553-3	chr16	15954057	15955057	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	67271.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.69540346096683	3.88696628218093	4.06596137156185	3.63782396281444	3.64719792856879	3.95342747173716	-0.446632875517159	0.414560372153394	0.785861805729108
Merged-chr6-90462552-4	chr6	90462043	90463043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-33.0	NM_001355668	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	5.88797609555884	5.62360373825442	5.14358164813257	5.78737215164019	5.45487798935227	4.9241517799638	-0.283729429557638	0.51465842495528	0.84317472508931
Merged-chr5-24165022-4	chr5	24164529	24165529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346582)	promoter-TSS (NM_001346582)	66.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	7.46216186136613	7.89124725619332	7.33225007667329	7.80820650597026	7.86223433715266	7.41251573244844	0.178063551824443	0.517149645409575	0.844527100635531
Merged-chr14-31376114-4	chr14	31375624	31376624	+	921.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39486.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	7.33762665158942	6.94985378964163	6.67307592784876	7.11892583741628	7.30491253636236	6.73244942308642	0.0874600888109637	0.775787262983862	0.9447881648961
Merged-chr2-60269538-4	chr2	60269028	60270028	+	756.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 2 of 4)	L2|LINE|L2	14956.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.4139182796056	3.51162565433155	3.69236417638866	3.26971984011527	3.23155905785928	3.80752665692857	-0.308872582527121	0.627787706009711	0.89338235093732
Merged-chr11-60115355-4	chr11	60114837	60115837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	CpG	10324.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	6.95229804520206	6.81527611107831	6.70495974000566	6.71502341433182	6.81657824751434	6.79514580410866	-0.0885595234047609	0.725721567285206	0.929707128236285
Merged-chr4-118098891-3	chr4	118098392	118099392	+	999.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	Charlie20a|DNA|hAT-Charlie	36054.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	3.75579076284615	3.70822276275626	3.46038089291481	2.92868551884357	2.78496716667117	3.24472496201234	-3.22012012685906	5.72951969553987e-05	0.00176571064750549
Merged-chr2-150918785-2	chr2	150918285	150919285	+	910.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	9191.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	3.82053587771338	3.58251517662125	3.69835132513705	3.84777771493309	3.52956165880355	3.71626769798428	-0.0132875960523391	0.980939475400638	0.995645370999113
Merged-chr9-45274854-4	chr9	45274374	45275374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5725.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	7.05088657220978	6.867835127538	6.6619546969587	6.63897073618149	6.67812591880475	6.49006543267945	-0.418174662791652	0.117579695933745	0.457794860113807
Merged-chr2-144556174-4	chr2	144555644	144556644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-85.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	7.5604996621557	7.60786635868626	7.44175613414587	7.74800725104288	7.86449489073399	7.32988680785641	0.19725220401986	0.433246217535427	0.797768240875626
Merged-chr14-75176783-4	chr14	75176310	75177310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	40385.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.44304018324377	7.45127166450283	7.22438346288892	7.69668130359603	7.82529205038249	7.50724963061784	0.446952706913212	0.0595260091811265	0.315843040992919
Merged-chr2-35329658-2	chr2	35329158	35330158	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	7351.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.97825347885357	5.42638401943505	5.22389637200204	5.4750962018694	5.34487314268252	5.68641378320036	0.53954542591974	0.142793336294453	0.504417233130498
Merged-chr18-39635028-4	chr18	39634499	39635499	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-138498.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.85924139699761	3.95716260014686	3.91863205201991	3.92873894687043	3.78556351582411	3.72902558782892	-0.294170803625461	0.56813729596777	0.868528648409077
Merged-chr12-3887471-2	chr12	3886971	3887971	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-4273.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.20074874281738	3.47790886962955	3.34952215822078	3.43190669314271	3.11927822085255	3.30766883059022	-0.237212348970124	0.707450420320123	0.923406217611176
Merged-chr13-44504651-4	chr13	44504188	44505188	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	64961.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.64899593243309	5.86322780774837	6.01692060091676	5.97511239955828	6.00553614532152	6.01099382988712	0.271543157597135	0.372771891164978	0.756577008990047
Merged-chr19-5840649-4	chr19	5840104	5841104	+	839.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4874.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	5.80947367941515	5.1314464095658	5.63659816511172	5.24614892719493	5.06778180798453	5.36468471565024	-0.648132320600314	0.093989582660503	0.408384875596865
Merged-chr13-36118406-2	chr13	36117906	36118906	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	763.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.27241260434804	5.5025586709718	5.13493084769451	5.40043415601171	5.46726186548462	5.12837031656867	0.05648218615083	0.876452820343652	0.971334744650699
Merged-chr10-111156610-3	chr10	111156107	111157107	+	996.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8195.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.39250005945298	4.38591689351491	4.49145546566493	3.93949314965866	4.20931399716404	3.79276786848724	-1.14499467268456	0.0251631315944577	0.18781609739071
Merged-chr5-64321763-1	chr5	64321263	64322263	+	711.0	f0_balb.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	91406.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.3507247569619	4.52014789459002	4.48744456012022	3.89005066846229	3.83241222278537	4.07157366078309	-1.51148363243818	0.00176101758738002	0.0280173520861791
Merged-chr11-115701782-2	chr11	115701282	115702282	+	909.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B2_Mm1t|SINE|B2	-1854.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.18408231957626	5.16943946570749	5.4649044810594	5.59369500314958	5.64037608676102	5.68902510964428	0.719435856778243	0.0319750388479086	0.216995272201026
Merged-chr9-78442071-2	chr9	78441571	78442571	+	962.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_125721, intron 1 of 4)	intron (NR_125721, intron 1 of 4)	1166.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	3.7759836739308	4.00122474082375	3.88336015924931	4.10316472582273	4.069211262816	4.3212285388747	0.795821684256048	0.112652604131446	0.448338447691312
Merged-chr11-71004498-4	chr11	71003966	71004966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-34.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	5.67601432953148	6.04836794286334	6.19522968944586	5.83694549076192	6.14229402071484	5.83108398202637	-0.0513776737574842	0.876331844969772	0.97129382175502
Merged-chr15-99497297-4	chr15	99496849	99497849	+	823.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-22619.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.17328961622874	4.00214874127569	4.49893819331288	4.22308625988232	3.99590048588368	4.3666816769391	-0.0966871032690439	0.846830342050802	0.964111312125802
Merged-chr6-137387130-4	chr6	137386628	137387628	+	946.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-23593.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.48190138723263	4.39443104665031	5.02401611702869	4.67346518489756	4.50251881818379	4.92710652557356	0.12369508317637	0.789541716431901	0.949244735006745
Merged-chr4-116684983-2	chr4	116684483	116685483	+	758.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011034)	promoter-TSS (NM_011034)	-616.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	7.81121938910729	7.89141284977909	7.66594196207128	7.64758003888514	8.03350339650012	7.89312813705629	0.106262725960956	0.651112304208201	0.902735752871093
Merged-chr8-70660532-4	chr8	70660047	70661047	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	-809.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	5.39446501619246	5.19114016701183	5.56642848705571	5.31024230285217	5.33543299760896	4.95596255158941	-0.320312658458767	0.388923884216287	0.768781380496339
Merged-chr2-156416574-2	chr2	156416073	156417073	+	793.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4336.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	5.8352026618573	5.28477794630316	5.79164523648031	6.06666397875492	5.79790775635016	5.94884594198802	0.509422233470796	0.139531796304322	0.499131433621496
Merged-chr13-21200196-4	chr13	21199724	21200724	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	20293.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.42915299496937	5.81707503724725	5.20118593738774	5.49272080653042	5.46141614917539	5.63604098217491	0.00888760789200573	0.980468596347716	0.995512982807197
Merged-chr4-132329517-4	chr4	132329022	132330022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027925)	promoter-TSS (NM_027925)	16.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	6.95905934139023	6.66286528400998	6.81562200411046	7.05420836733267	7.32207181371761	6.97539784561665	0.487603510347149	0.0636228338138327	0.328754192136956
Merged-chr6-52490609-2	chr6	52490109	52491109	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1842.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	3.44540759469276	3.49595817796322	3.79821564899736	3.69186308747018	3.55238723566085	3.44944165991256	-0.0352335243185133	0.95173096536152	0.988931169182564
Merged-chr7-142096102-2	chr7	142095602	142096602	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-818.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	4.22131674351836	3.90584032332076	3.74616395611463	3.92705673491745	3.83424886851478	3.81809113216979	-0.368397617360006	0.48982576576457	0.829929554110118
Merged-chr12-112628528-2	chr12	112628028	112629028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	8481.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	6.82345972396831	6.3662826919842	6.5354342121008	6.70617070496667	5.9677604625809	6.09206810476986	-0.469097932753884	0.169467971955592	0.546370379971568
Merged-chr9-123869484-4	chr9	123868989	123869989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7460.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	6.6233828556215	6.45247303124848	6.62254971744616	6.88704458322863	6.87402695298699	6.57863547506473	0.363383574577074	0.170440163321537	0.547799648872436
Merged-chr13-112502158-2	chr13	112501658	112502658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010560, intron 15 of 16)	L1M4|LINE|L1	38088.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.2637887963093	3.92230452445951	4.54948753219024	4.17352855356917	4.30696061510014	4.49994328356121	0.182517270358875	0.715864340920626	0.92647595514209
Merged-chr11-85374929-1	chr11	85374429	85375429	+	1000.0	f0_balb.idr	intron (NM_138681, intron 6 of 25)	intron (NM_138681, intron 6 of 25)	21765.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	2.43164565649915	2.62676202892	2.63819114245636	2.357780785685	2.2606589064239	2.39603103245775	-1.51895715360373	0.0729841200456417	1
Merged-chr14-40935864-2	chr14	40935380	40936380	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	12329.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.46191333664667	5.75877420636909	6.01443457462796	5.01639862483457	5.20663737293865	5.67180812562166	-0.834607108461678	0.0312145260507652	0.213942873471875
Merged-chr15-38300013-2	chr15	38299495	38300495	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001357677)	promoter-TSS (NM_001357677)	-95.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	8.367371800156	8.34056047246368	8.37292948584817	8.25447165765409	8.43564151032514	8.35859569721522	-0.00926640929220337	0.963605243565103	0.991121100730027
Merged-chr13-119615641-2	chr13	119615141	119616141	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.55533455665684	4.6017834709073	4.64704767875572	4.01536791704459	4.43814819077012	4.04055015677706	-1.04394141408342	0.0319992599462492	0.217106524919073
Merged-chr18-36240091-4	chr18	36239588	36240588	+	808.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41074.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	4.60200073875915	4.60305671173316	5.0277592677158	4.76106977451731	4.76555146024318	4.61900898860171	-0.0582821086047241	0.889951137327476	0.974355976772955
Merged-chr1-170573535-4	chr1	170573027	170574027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	16322.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	4.87383406329806	4.41830303206284	4.60444098090156	4.19502309589615	4.3576841757591	4.12845598995619	-1.04023008802811	0.0269078447579517	0.195336585815708
Merged-chr2-114610135-2	chr2	114609635	114610635	+	986.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	44829.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	3.668356138615	4.04658596996218	3.70682340466806	3.82158814050187	3.90999328039438	3.98183858204114	0.242408643254124	0.652679607557777	0.902998982169989
Merged-chr11-119916447-2	chr11	119915947	119916947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 4 of 7)	intron (NM_001085498, intron 4 of 7)	2637.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	5.0183827415969	5.14066322829296	4.81167395768158	4.55671238416731	4.48819550780744	4.54793514258369	-1.1057316107378	0.00634843325761217	0.0727986829523184
Merged-chr5-136987515-4	chr5	136987013	136988013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310747)	promoter-TSS (NM_001310747)	446.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	8.2614553237132	8.26655224948622	8.12645882482171	7.94828923313578	8.21700203418766	7.93166113075426	-0.249434485212922	0.258188018061971	0.655659776470938
Merged-chr5-102045234-3	chr5	102044694	102045694	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	24727.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.50854390310892	5.45699364631102	5.83802728187686	5.66597310712344	5.73900937629619	5.89886457372368	0.307813451473499	0.348648369667356	0.736527204815714
Merged-chr11-86117682-3	chr11	86117188	86118188	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178309, intron 14 of 19)	intron (NM_178309, intron 14 of 19)	83505.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	3.05629737220594	3.00563076228905	3.26948129240083	3.21592166543513	2.86312539997778	3.05658707580354	-0.265365546917448	0.698102574110842	0.920194115035571
Merged-chr11-71019450-4	chr11	71018944	71019944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291147)	promoter-TSS (NM_001291147)	-141.0	NM_033562	116891.0	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	5.92447226690179	6.03434212551837	6.1009263051052	6.30779623878068	6.16337527285203	6.09577223295226	0.303074527473009	0.291481294724828	0.689089386291402
Merged-chr5-142896463-4	chr5	142895841	142896841	+	770.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1103.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	4.95976923008673	4.96502608057718	5.2016670255572	5.08949665330559	4.809709020118	5.13865648481243	-0.0604251614258761	0.874920234722214	0.970813891247597
Merged-chr12-80939360-4	chr12	80938903	80939903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	5996.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	8.18579565180227	8.54111549898667	8.11753728737312	8.54569178841465	8.79835395499404	8.28184687745132	0.368765313885706	0.142542259012809	0.503979616212197
Merged-chr13-18785936-3	chr13	18785446	18786446	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 5 of 28)	intron (NM_172120, intron 5 of 28)	68654.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	3.55641957077179	3.67469542968172	4.10863666384932	4.32431920668316	4.60494197345585	4.51881808441746	2.05764835921237	0.000119168330808237	0.00329099185857675
Merged-chr1-172502783-2	chr1	172502289	172503289	+	828.791626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	2543.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	3.83554709699897	3.14627985139526	3.33508542828323	3.49187372496149	3.33186870784252	3.52220076947089	-0.109781288456603	0.86829626467019	0.969642939011354
Merged-chr4-53078078-2	chr4	53077598	53078598	+	666.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 19 of 50)	exon (NM_013454, exon 19 of 50)	66218.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	3.23618996520607	3.45654793541268	3.29642262854895	3.3967534973188	3.33369469433563	3.1898732033131	-0.0891395772513158	0.88559334265428	0.973636976161493
Merged-chr6-83011452-3	chr6	83010951	83011951	+	991.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	22020.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.50224163282984	4.49840734924104	4.57797156436881	4.24405464965292	4.62312559858252	4.24967539364176	-0.313707738953329	0.491583799864851	0.830577684235539
Merged-chr1-87214337-4	chr1	87213863	87214863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039169, exon 1 of 7)	5' UTR (NM_001039169, exon 1 of 7)	424.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	8.08117302248499	7.62326652246736	7.52822520688647	7.95205002482597	7.50747107795509	7.49140656343502	-0.14781165429983	0.595629052243577	0.879568440346791
Merged-chr1-10038063-4	chr1	10037571	10038571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	88.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	8.13453555066516	8.30989083957642	8.17375942826352	8.38138303064676	8.35886861810984	8.19618573508306	0.151689451515391	0.470387231613197	0.819495618343931
Merged-chr14-66277117-4	chr14	66276610	66277610	+	988.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	3942.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.42254180057694	4.19266498410572	4.39079316543587	4.67008665337331	4.52451888810162	4.27460762798927	0.434057286564056	0.338080622292823	0.728000347830431
Merged-chr10-79824577-4	chr10	79824058	79825058	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3537.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	5.04392007558012	5.56806235687097	5.47105398853415	5.410040536635	5.42976556750866	5.56132659121714	0.164701477184678	0.650046950750899	0.902475350617976
Merged-chr11-70460619-2	chr11	70460119	70461119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023158)	promoter-TSS (NM_023158)	-635.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	5.48122772040556	5.32921517583208	5.19255076021556	5.31378821693004	5.6325744592776	5.59318840523937	0.338301000470768	0.331278834704826	0.722657541897001
Merged-chr12-111670088-2	chr12	111669588	111670588	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 6 of 7)	intron (NM_021273, intron 6 of 7)	2250.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	6.25705005644437	6.28570330354824	6.42101330657184	6.34049428597984	6.53788086463467	6.49806200169368	0.239049424566247	0.378178532003299	0.760506544479555
Merged-chr19-6969802-4	chr19	6969319	6970319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008874)	promoter-TSS (NM_008874)	-5.0	NM_001290349	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	4.20428614187958	4.07947302767041	4.4414398092557	4.47836538834623	4.16339415761732	4.42573927717	0.310320304181972	0.511565042136882	0.841459220847773
Merged-chr1-131658205-4	chr1	131657712	131658712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	19898.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	4.92052551423399	5.00667781990147	4.71139930930118	5.05192474354877	4.92586778525489	4.8979944966914	0.144192006243449	0.709116112945197	0.923909555179111
Merged-chr4-88415268-4	chr4	88414765	88415765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 6 of 6)	L1MA6|LINE|L1	23661.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.52341996157702	5.46906637064853	5.63570579192768	5.77020614815622	5.7537078634859	5.61576466444514	0.337657631513389	0.286172988241055	0.683463892237707
Merged-chr17-87672423-4	chr17	87671882	87672882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008628)	promoter-TSS (NM_008628)	-175.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	4.45937539768534	4.6046007618947	4.57311861467309	4.33747239536936	4.38110959067453	4.29444481557828	-0.521412586379504	0.229536372985744	0.62517632598914
Merged-chr3-60511566-3	chr3	60511039	60512039	+	884.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	10360.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.44493457766546	4.16087371765659	4.81898715680094	4.97446516296111	5.20507529639018	5.02487363321806	1.35335537392709	0.00218111504455409	0.0329913770884609
Merged-chr4-62516043-2	chr4	62515543	62516543	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008525, intron 1 of 11)	intron (NM_008525, intron 1 of 11)	3866.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	3.30597071205468	2.9006410345873	3.11115737730236	3.04823648388762	2.79022960191375	2.94266328276794	-0.871424967758889	0.221342362658998	0.61588601231039
Merged-chr15-58261156-2	chr15	58260656	58261656	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46264.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	6.9880692586856	6.70583223405628	6.87817150720619	6.29654609374544	6.30468619560293	6.27866636502349	-0.907079483234116	0.000650170901639452	0.0129331628935251
Merged-chr2-25549639-4	chr2	25549142	25550142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2702.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	3.8292614157341	3.67948262418554	3.64556921811915	4.33076300134451	4.4600761204849	4.19553321123635	1.83858341056192	0.000373200987806019	0.00833198491906713
Merged-chr9-20651940-4	chr9	20651424	20652424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023371)	promoter-TSS (NM_023371)	-206.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	5.078821081757	5.22161064028705	4.96056160827243	5.21712522459321	5.05018362739906	4.91179267554634	-0.0597803267815717	0.873295274456159	0.97040331531529
Merged-chr11-98412576-3	chr11	98412039	98413039	+	699.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	55.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	2.65426852071333	2.64822123740495	2.86928204744215	2.68417970409671	2.80254788192129	2.70042629249683	0.0560132669919863	0.939705096687823	1
Merged-chr14-79522538-4	chr14	79522037	79523037	+	910.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6863.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.51261749358745	6.68559708458971	6.60279980202577	6.31977862376156	6.38235429875138	6.2765542629895	-0.441815414461835	0.0967002026192198	0.414629899193181
Merged-chr17-24416068-2	chr17	24415576	24416576	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357626, intron 2 of 8)	B1_Mur4|SINE|Alu	1401.0	NM_001080128	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	4.72310336467558	4.23588859403769	4.59024362823581	4.50906388565312	4.53433631210692	4.5758339636313	0.0190050931573489	0.966093434385915	0.992210797624133
Merged-chr5-21188148-2	chr5	21187648	21188648	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	1881.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	6.8834680670166	6.81733688694555	6.72692499225498	6.45070785581628	6.91277603636916	6.86088946175848	-0.0837411342653617	0.759944876726879	0.940572672765463
Merged-chr13-81351210-3	chr13	81350709	81351709	+	871.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	Lx9|LINE|L1	281935.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	6.97816336823064	6.6402978692865	6.87631582000395	6.73821919441797	6.70529312218662	6.75699763752213	-0.164661564711108	0.526205450291503	0.849338088345222
Merged-chr3-121329778-4	chr3	121329300	121330300	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38060.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	4.38449538335905	4.33944994661635	4.28087627624154	4.57083138732178	4.61127038996173	4.52607262752215	0.594456049963999	0.165731855459476	0.540863657924297
Merged-chr10-34167182-4	chr10	34166691	34167691	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	MLT1C|LTR|ERVL-MaLR	-39219.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.64262708824816	4.38973297674672	4.59499245684238	4.29293756686566	4.43079255300376	4.49930812438088	-0.342741146673367	0.43291656074565	0.79758551656855
Merged-chr10-41587367-5	chr10	41586822	41587822	+	970.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 32 of 47)	intron (NM_001358562, intron 32 of 47)	19306.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.12911561642563	5.57537813802325	5.07337918879691	5.55306473132556	5.61816283633352	5.50234791214821	0.517387218085242	0.156885636498195	0.527761038035113
Merged-chr14-56576633-6	chr14	56576130	56577130	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145978, intron 1 of 34)	intron (NM_001145978, intron 1 of 34)	1011.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	4.66938988457922	4.61101359822116	4.70526538728933	4.89187954216109	4.78044246990665	4.60773472039454	0.259554796274692	0.520337220062289	0.846356623014758
Merged-chr1-138193408-2	chr1	138192908	138193908	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-18103.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.00625433831294	2.80835378359458	2.98550541940249	3.02333792881277	2.84055182627755	2.93804813133484	-0.00255415520472865	0.997059470686686	0.999305289467698
Merged-chr17-27897945-2	chr17	27897445	27898445	+	801.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	11297.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	4.01789624499441	3.82091507642684	4.19047747587507	6.24341754194815	6.36982601803359	6.06159522531285	5.92073472905112	1.85404942761248e-21	1.57420147727326e-18
Merged-chr11-61930845-4	chr11	61930328	61931328	+	923.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-571.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	8.32108556543336	8.56509376006057	8.15165566827208	8.12271206604473	8.77996183966223	8.24108379239173	0.0853686544684373	0.752056711973557	0.938053911816822
Merged-chr6-51556776-4	chr6	51556267	51557267	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	L1MB2|LINE|L1	11474.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.67621429834091	5.81259803581716	5.68402431947043	5.67728862418446	5.54336354756808	5.63803139969835	-0.206689142676471	0.509993974665607	0.840623252721494
Merged-chr13-85376545-4	chr13	85375993	85376993	+	972.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87007.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.25090482888102	4.55071129781876	4.46145814193075	4.37641906207533	4.52135776135843	4.56906154348123	0.158871876527097	0.718662297663065	0.927415661027328
Merged-chr7-19458213-4	chr7	19457759	19458759	+	960.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	CpG	235.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.22114504457278	6.44992747551673	6.45419546502068	6.75123170904788	6.58766124891494	6.61765812851926	0.445988510341498	0.0967560540869851	0.41464408281404
Merged-chr8-13645588-2	chr8	13645088	13646088	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	31999.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.68898202359403	5.83557056207085	6.04799390722122	5.59701616245987	5.7254802248999	5.95817831908386	-0.173813933174693	0.591142940855178	0.877415484694165
Merged-chr4-134128372-3	chr4	134127871	134128871	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080559, intron 1 of 2)	intron (NM_080559, intron 1 of 2)	382.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	5.69588190435113	5.66788235251351	5.90965873857896	6.09473752141055	5.98383801859975	5.94732594176974	0.458767119821364	0.128756670118136	0.479799601167289
Merged-chr15-101977534-4	chr15	101977029	101978029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-23242.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	8.38515136304937	8.7876255615178	8.70160738496021	8.52826678179946	8.82314934568987	8.68180273960517	0.0677720759551945	0.766009234295489	0.942327597499357
Merged-chr6-116630562-2	chr6	116630062	116631062	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1563.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	3.80246235707544	3.13642466388704	3.67946491566572	3.63337081716211	3.31831617880509	3.64751710960039	-0.113500206018056	0.863151086148914	0.968203690581793
Merged-chr7-89243907-3	chr7	89243421	89244421	+	941.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360745, exon 4 of 14)	exon (NM_001360745, exon 4 of 14)	94866.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.27849927603731	5.57634364389224	5.40490492942322	5.3705924522858	5.57310037226758	5.52654719761168	0.127181925412618	0.708500445424344	0.923708659245088
Merged-chr2-126478307-3	chr2	126477806	126478806	+	945.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13247.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.29193364244353	6.38934162524314	6.01968589429579	5.6650741565667	5.70159451523344	5.48275427584955	-1.0920257701865	0.000484836438082663	0.0102678214151138
Merged-chr17-70854211-3	chr17	70853732	70854732	+	876.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-700.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.58780978823494	6.57145966194477	6.92215551569804	6.86019758736782	6.51951545437349	6.6889628415247	-0.00133869196643235	0.996155055988483	0.998961028701257
Merged-chr18-23874777-4	chr18	23874301	23875301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70831.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.03534770081308	6.68133139702509	6.14229383882264	6.63745020652728	6.77564654078494	6.42258089258016	-0.0906376155713327	0.784643951413792	0.947710697182936
Merged-chr6-97805958-3	chr6	97805456	97806456	+	674.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.31057654441331	5.17105238456313	5.51972671959328	5.55668697241799	5.80921351610996	6.01414963556549	0.884887822095447	0.0104345977551438	0.103497676720707
Merged-chr17-73952382-4	chr17	73951810	73952810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.58668121778392	6.57036227387526	6.6286063300403	6.66420867256033	6.86708759100386	6.81245439775727	0.303471392537361	0.232851928687469	0.629144800695771
Merged-chr7-132713674-4	chr7	132713222	132714222	+	969.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63194.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	6.29666025430726	6.80364200288177	6.50822686862565	5.81369073497254	5.92282420224581	6.03389776011115	-1.06175258253222	0.000498177710129997	0.0104651277214079
Merged-chr10-8736896-2	chr10	8736396	8737396	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	intron (NM_175155, intron 16 of 19)	149174.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.00930757726139	3.93328871987997	4.13520853363211	3.98302509131966	3.90734906113839	4.63342906011334	0.510476226526782	0.34465923567531	0.733268181259122
Merged-chr11-63098830-4	chr11	63098316	63099316	+	948.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30166.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	2.98760338459025	2.96681724066313	2.84439017125428	3.14142807546761	2.88198429550332	3.10022440074805	0.48749542661384	0.480515385213839	0.824543506620807
Merged-chr17-73039291-2	chr17	73038795	73039795	+	952.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68690.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	5.23739505745154	5.24906064443588	5.16270599134922	5.44901139806748	5.53745540146535	5.19309007079264	0.382079847835466	0.275087249125886	0.672466816815303
Merged-chr9-66361931-4	chr9	66361416	66362416	+	810.720825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	RSINE1|SINE|B4	11466.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.9466583376855	5.8282306924714	5.21273463537177	5.69146973344411	5.68221608887803	5.6349858489261	-0.0828490287780434	0.819221603335131	0.957209935971094
Merged-chr1-144200705-4	chr1	144200209	144201209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23337.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	5.70702313777356	5.89463145157808	5.31632544141627	5.60517958642972	5.67450538835396	5.34758451426705	-0.214288256971839	0.548629719156569	0.859867803194195
Merged-chr18-67450149-3	chr18	67449617	67450617	+	757.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-981.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	3.80967592770414	3.20043540434458	3.58258794619038	3.65347598642098	3.85240151626055	3.59927050682422	0.513132466299315	0.413734876840782	0.785359020041643
Merged-chr4-155736161-3	chr4	155735641	155736641	+	882.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101506, intron 2 of 3)	intron (NM_001101506, intron 2 of 3)	1337.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	4.35577768590864	4.38567684437757	4.72929478509858	4.3753653528852	4.31087225752126	4.26850114667789	-0.438004149405197	0.333927655745876	0.724655149031189
Merged-chr11-83472447-1	chr11	83471947	83472947	+	708.0	f0_balb.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	-661.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	6.13288596988464	6.02003995016421	6.05614437093119	5.95300665583721	6.21569803248353	5.65547669107099	-0.157434877650046	0.621895446763225	0.890881421072795
Merged-chr3-106483492-4	chr3	106482993	106483993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1043.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	6.96246588797997	6.94975370939091	6.55152189598893	6.88045402244124	7.13336242477374	6.59283976553923	0.0858012269453929	0.767964220554827	0.942754893315356
Merged-chr4-9669231-4	chr4	9668738	9669738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-76.0	NM_001177849	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.00357766869203	7.05589079260696	6.81492074244721	7.32438266462564	7.3141383996616	6.97659946024343	0.385982511002492	0.130472420413649	0.482676025154672
Merged-chr2-59978296-2	chr2	59977796	59978796	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 5 of 35)	intron (NM_001001182, intron 5 of 35)	-95690.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	3.0865015897557	3.18931837009662	3.12104971967608	3.27014617218342	3.26455529060792	3.57448448580383	0.97003412314256	0.128180914563994	0.478818295804301
Merged-chr4-41714424-3	chr4	41713911	41714911	+	852.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-894.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	3.38156323938082	3.16941765066849	3.2466594144754	3.2196381469115	3.0791849463368	3.01712502721339	-0.681443537340237	0.294740383374288	0.69165654633109
Merged-chr16-36636154-2	chr16	36635654	36636654	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	29923.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.01897048615332	5.8649222178938	5.81923481265422	5.60795306136948	5.75236512684052	5.69867930653828	-0.391692651012481	0.203082490131423	0.593044889392741
Merged-chr16-11068054-2	chr16	11067554	11068554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	1756.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	3.00408885990696	3.23618857814464	2.95956726813769	3.07338394544459	2.92811890493765	3.09358622296743	-0.214409856239659	0.75205536398495	0.938053911816822
Merged-chr11-59202466-4	chr11	59201968	59202968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037964)	promoter-TSS (NR_037964)	-18.0	NM_001302335	67212.0	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	7.78909319863313	7.92485708539003	7.89831791208141	7.33498440106066	7.41796513217793	7.01799090590047	-0.861700915418727	0.000356155613144614	0.00801974165413907
Merged-chr13-52981077-6	chr13	52980526	52981526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	13.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	4.75372711131851	4.63962155663916	4.98337215762941	5.29538498442866	4.64020548569467	4.90621985498287	0.401925241663596	0.353049351600812	0.74042924884689
Merged-chr2-31742336-4	chr2	31741830	31742830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-17609.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.44608159033864	4.22671563960009	4.45486163138959	4.15955309105348	4.16046303714776	4.12139216180798	-0.617764471461255	0.181329736187393	0.563652213858344
Merged-chr16-85051969-2	chr16	85051469	85052469	+	791.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	MIRb|SINE|MIR	79758.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	2.51527774360376	2.51738844076931	2.62076898966205	2.70767262526824	2.69283302808702	2.8168215267411	1.06817874350402	0.158229834147237	1
Merged-chr4-34084190-2	chr4	34083690	34084690	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-34123.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	2.99046389145858	3.12789704158873	3.12049847526061	2.97414788502854	3.07962273081139	2.89110830905695	-0.414609511078721	0.540913627890491	0.856582937501506
Merged-chr16-87661301-4	chr16	87660803	87661803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37651.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	7.90053053842398	7.87744278003268	7.80550773355212	7.74805052864108	7.75319761188228	7.5707728623663	-0.237834731412627	0.274373482178527	0.671721462492876
Merged-chr12-84175859-4	chr12	84175367	84176367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18148.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.08727431146106	7.93189498660674	7.97774534598277	7.9429415337474	8.08782158990884	7.86134276195917	-0.0408370292001971	0.850617973236258	0.964981271430729
Merged-chr10-37226707-3	chr10	37226213	37227213	+	702.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-87787.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.45450742448312	4.34508042230404	4.20776442215177	4.13363621286331	4.05648624598949	4.45020074830037	-0.35644404385772	0.452817739967652	0.809457484278845
Merged-chr15-13423637-4	chr15	13423120	13424120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-249945.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.97003223036654	4.1132328763999	4.33074667708082	3.93175954807379	3.874853070678	4.23058242135651	-0.369213426907546	0.466577026230529	0.817586753758551
Merged-chr1-134067275-3	chr1	134066759	134067759	+	744.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11896.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.55043528800015	3.63058714861925	3.99407110567184	3.80077844120783	3.74669025783287	3.92431561211168	0.302601857856667	0.583440694891397	0.874062789752135
Merged-chr5-134456801-4	chr5	134456307	134457307	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001244936)	promoter-TSS (NM_001244936)	-91.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	5.53964641221605	5.02568590460988	5.43916700688109	5.63643173076712	4.79031765814948	5.04843354408655	-0.27824823827509	0.526112464237197	0.849279136234443
Merged-chr10-23787806-2	chr10	23787306	23788306	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-597.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	5.99852523610991	6.26093296724003	6.11493380449291	5.9143957771913	6.3717741834503	6.15398709176077	0.0631408889383917	0.837424162946304	0.962133986386607
Merged-chr1-74284316-3	chr1	74283817	74284817	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025580)	promoter-TSS (NM_025580)	421.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	6.90005209784542	6.53979634389407	6.58697894049581	6.89230734501267	6.8251008731449	6.52023298862552	0.114991752110844	0.681152085885084	0.914599647187446
Merged-chr13-34994744-3	chr13	34994212	34995212	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-568.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	5.80626939864687	5.80978540125085	5.90153583150977	5.66971309867632	5.58386167232099	5.84433327704265	-0.258835587914077	0.403541162666235	0.778882003719199
Merged-chr6-129434391-4	chr6	129433882	129434882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	17618.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	6.57946327071266	6.49360002473272	6.36728137721107	6.47528253808854	6.49469956124511	6.22128493028493	-0.123680726635533	0.652897055666059	0.90302955797642
Merged-chr19-44009068-4	chr19	44008587	44009587	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167905, intron 7 of 7)	intron (NM_001167905, intron 7 of 7)	20160.0	NM_001001446	226143.0	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c23	AW107714|BC034834|Cyp2c44|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 23	protein-coding	4.32902573679	4.06903814581498	4.11101611335794	4.0773200656933	4.28846696450317	3.92553252996922	-0.168911678933151	0.734822286757624	0.932617455907478
Merged-chr13-60686140-2	chr13	60685646	60686646	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	83935.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	2.79213393446493	2.64851385774875	3.1289722651273	2.67204608700948	2.60162929277519	2.8061309538833	-0.900310830164449	0.241449099446159	0.638462410357391
Merged-chr10-41386071-4	chr10	41385558	41386558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEc|LINE|L1	-64300.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	6.55455362012058	6.73639476491207	6.55714428454458	6.71025564906882	6.75334435987665	6.76354853549453	0.187652867681295	0.462579391967958	0.815299852719125
Merged-chr9-7221160-2	chr9	7220660	7221660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36655.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	6.59419243543397	6.87502949007824	6.68556160909908	6.45063854459887	6.7458286860247	6.90668536136411	-0.0244687835074379	0.929886263876212	0.984318296592424
Merged-chr3-116120985-1	chr3	116120485	116121485	+	635.0	f1_c57bl6.idr	exon (NM_011693, exon 5 of 9)	exon (NM_011693, exon 5 of 9)	8703.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.80755281673163	3.9614677125671	3.79369191752949	3.98603925249173	3.78894606577451	4.05916184097669	0.254149011493996	0.623416255409595	0.891419753943245
Merged-chr11-11658999-4	chr11	11658509	11659509	+	887.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26916.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.3161773111803	3.3102992374501	3.34452980941487	3.09551005340204	3.3682611467827	3.41511255242319	-0.0902733854243008	0.884650425356801	0.973538624783452
Merged-chr9-124118679-4	chr9	124118198	124119198	+	858.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	3.72083820363202	3.9087497028671	3.86017745886833	3.70504193768202	3.97305790506024	3.92921011581702	0.140517013367799	0.788988364041518	0.949092571737679
Merged-chr11-64435222-4	chr11	64434725	64435725	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178870)	promoter-TSS (NM_178870)	-107.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	2.51638532575181	2.52235702251803	2.52807609674932	2.91513655923898	2.78222586270604	2.91957123869835	1.9992349898523	0.010891032709479	0.106705059122059
Merged-chr15-58423909-4	chr15	58423401	58424401	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 4 of 23)	intron (NM_145959, intron 4 of 23)	8433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	5.11075948670681	5.19590607495844	5.05106347346785	5.11923394627494	5.37872247710577	5.15112429562892	0.216699690126636	0.548752692014621	0.859979546042991
Merged-chr3-88175968-2	chr3	88175468	88176468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	1817.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	3.48457420970629	3.80873731661352	3.96052274723893	3.48862793892161	3.63277674698092	3.98325038017391	-0.162927958365747	0.782567132559871	0.946600874757591
Merged-chr8-83089130-3	chr8	83088561	83089561	+	896.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-76291.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.22495450440471	4.20441912060525	4.5298457865304	4.31403107344525	3.96276562249502	4.3112381875638	-0.330037639355088	0.49651141060217	0.833055500844581
Merged-chr15-103370595-4	chr15	103370062	103371062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3771.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	4.60742473850288	4.67026806202456	4.71723890309944	4.40790252358105	4.68013397786463	4.92496557222197	0.0411946941915216	0.923105562264001	0.982693984177635
Merged-chr6-120903664-4	chr6	120903207	120904207	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	13117.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	2.83876453061861	2.99451261405041	3.08449959820681	2.83922010344536	2.82950642350508	2.92560260568997	-0.539701534330465	0.438561419037103	0.800615097962194
Merged-chr1-88652800-4	chr1	88652314	88653314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	49377.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	6.37659297748577	6.34913092313918	6.23937672349846	6.17981237337182	6.15736848372675	6.35828674060181	-0.166450680335611	0.547486385264352	0.859305978516546
Merged-chr4-126110756-4	chr4	126110314	126111314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6857.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	6.92751203004059	6.82878845814604	6.60941265397146	6.90132639758253	7.07804657236071	6.78511548686278	0.203377685118956	0.438342177798467	0.800490069452335
Merged-chr18-5098921-2	chr18	5098421	5099421	+	837.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153153, exon 25 of 35)	exon (NM_153153, exon 25 of 35)	52332.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	3.40925490764468	3.21011826017035	3.7006528932673	3.14707642705222	3.14469556692401	3.31242749556141	-0.993354199494723	0.124055496016214	0.471342909247358
Merged-chr10-9706734-2	chr10	9706235	9707235	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22013.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	5.23639620138474	5.01169589876628	4.82187714916376	4.66803988600828	4.78939215469125	4.88805065566709	-0.578037843585353	0.145644105252484	0.508806562677333
Merged-chr2-180118456-2	chr2	180117956	180118956	+	726.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-910.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.87245435484053	6.07042635434996	6.10075213872348	5.76935589296654	5.91739681596953	5.52763279791247	-0.44673106638059	0.16062836482221	0.53337460660229
Merged-chr1-92907436-4	chr1	92906941	92907941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_138577)	TTS (NR_138577)	452.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	6.2367437028652	6.52457144924389	6.31579826403703	6.54621063079334	6.51645633834643	6.59392662077334	0.292977256713753	0.281550506718665	0.679680531197724
Merged-chr10-112140002-4	chr10	112139510	112140510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23611.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	4.8234121350704	4.87449158848998	5.1052342058417	4.78796603076357	4.94993345547283	5.26000869477413	0.158494426997444	0.690312638859325	0.917799022980422
Merged-chr10-117832866-3	chr10	117832384	117833384	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	13090.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.96129782222653	5.45976639116721	5.90206250168241	6.18201953255673	6.10452483674805	6.20361661235603	0.64969665364231	0.0426575541766566	0.259003756290954
Merged-chr7-45162334-5	chr7	45161890	45162890	+	957.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1531.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	2.96381117760514	2.74145055875908	2.75816631172561	2.79501980787384	2.69081701616243	2.89321637893358	-0.186623268521203	0.797637292334698	0.951799370596145
Merged-chr18-61419907-3	chr18	61419408	61420408	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19477.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	4.04628303761995	4.2054629171459	4.24431087744177	4.21293890068914	4.2365823001658	4.22182615430943	0.166012877006092	0.720414357355025	0.928155640080294
Merged-chr4-145211431-4	chr4	145210892	145211892	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011610)	TTS (NM_011610)	-16387.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.71331519201268	5.64041201079523	5.64207629722305	6.25891612589754	6.36367110875848	5.94423910975697	0.954017305972914	0.00192016825469444	0.0299649962746839
Merged-chr16-44723421-2	chr16	44722928	44723928	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145972)	promoter-TSS (NM_145972)	-873.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	3.05644170089674	3.21528992220514	3.16121333917496	3.05359207047579	2.80489473487533	3.17623326212774	-0.59804192062804	0.384047264796821	0.765261861420899
Merged-chr2-90572303-4	chr2	90571819	90572819	+	828.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	8328.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.93721603734206	5.55494072233305	5.93434642935719	5.8709100185618	6.12078363785376	5.90066723089355	0.283709635268486	0.377000483577616	0.759569389997973
Merged-chr7-120870253-4	chr7	120869726	120870726	+	995.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	19037.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.80339678212346	6.02885876883891	5.98829372500201	5.77439336354662	5.57286796933127	5.70785691542176	-0.466627364659983	0.132476678463552	0.487037487809625
Merged-chr4-119962972-3	chr4	119962481	119963481	+	669.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	148303.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.55658473608885	3.61800614133088	3.48801490140056	3.39872374831551	3.14162271546524	3.3333895939335	-1.04207709979093	0.086354159202851	0.389239267548799
Merged-chr7-122813974-4	chr7	122813472	122814472	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	142228.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	3.19681313376183	3.08397916521942	3.52769156825949	3.53690865709763	3.59158443841721	3.49233146563993	1.0433274253141	0.0954998422011687	0.411941465519691
Merged-chr2-60175341-3	chr2	60174844	60175844	+	833.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34592.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	3.34493788863364	3.28631196003087	3.34557850061941	3.3532121411624	3.28504819760859	3.24487156923388	-0.11441606029639	0.849862847834298	0.964746847431705
Merged-chr1-80609859-4	chr1	80609347	80610347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	L1MA8|LINE|L1	55505.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.30628393129915	3.77485049674633	4.30103814255072	3.93901335408321	3.88068615698511	4.32630963539006	-0.259813727127366	0.63217733783431	0.895435008062156
Merged-chr2-27679916-4	chr2	27679408	27680408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2707.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.46939573026042	7.79682192719191	7.35538906874427	7.48958464300941	7.65019825730815	7.41257421148113	-0.0520290512291378	0.835064822871982	0.961451138529569
Merged-chr4-142095119-2	chr4	142094619	142095619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10815.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	7.26423600033065	7.41469998748759	6.98347079569514	6.829211636689	6.6110093870341	6.01238172439955	-1.07146641243674	0.000921385030075506	0.0168906379340213
Merged-chr2-165955013-4	chr2	165954510	165955510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37627.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	8.11751365578106	8.02534910696908	7.96641824455626	7.92284635025219	8.41744181946508	7.79237000156444	0.0633231895365997	0.805783024606153	0.953986594404215
Merged-chr5-142927565-2	chr5	142927065	142928065	+	795.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20811.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.57091731410177	4.60329802606387	5.08415243791898	4.78981225479744	4.9272775886401	5.26630275950589	0.534129701594503	0.214963753153844	0.608170317702451
Merged-chr5-100572451-3	chr5	100571964	100572964	+	875.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139198)	promoter-TSS (NM_139198)	-259.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	3.96579806848773	3.68882172311883	4.01841149333778	5.35862332637563	5.2760868136999	4.68608525476449	3.32197751118067	1.27543772791707e-10	1.6712853931421e-08
Merged-chr2-170128866-2	chr2	170128366	170129366	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	2354.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.69695637884604	6.70951297049679	6.5942905910448	6.77576110478462	6.9963338987167	6.60116710690749	0.221440640247337	0.404805364164765	0.779791650050306
Merged-chr4-116676244-2	chr4	116675744	116676744	+	992.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	4.09034548184755	4.03672982591885	3.88820388931109	4.57728124526133	4.36595733912793	4.17011933921691	1.0249674269255	0.0355004670541585	0.231299261032215
Merged-chr19-4071608-2	chr19	4071108	4072108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-10880.0	NM_001160253	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	5.30500528073472	5.4426276747789	5.15358127428622	4.94406764325175	4.83498841009139	4.9708308729264	-0.843266122612146	0.0214669975288906	0.169286202875111
Merged-chr5-135909163-4	chr5	135908637	135909637	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21218.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	7.52503917333425	7.72419565318432	7.507128052044	6.97798111457753	7.08041587149029	6.56720186205892	-1.01889211863288	0.000134759063158378	0.00364651451293733
Merged-chr8-70720835-4	chr8	70720283	70721283	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 2 of 3)	RLTR25B|LTR|ERVK	2240.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	6.70773217202371	6.87723943006643	6.81093272874965	6.57493003767354	6.99076737947245	6.59605738425021	-0.0823301006959317	0.764992940944447	0.942108083032718
Merged-chr6-43265492-4	chr6	43264976	43265976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133674)	promoter-TSS (NM_133674)	-168.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	5.99021332436792	6.25751101268924	5.94459856805436	5.63055739212534	5.47016221141206	5.29145632628113	-1.08263661592481	0.000955185524728667	0.0173800737243873
Merged-chr6-38981522-4	chr6	38981015	38982015	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	62529.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.52231349513479	6.17260584787826	5.83543165959975	6.64875220361735	6.66850999580504	6.17651022605465	0.498700203866971	0.136718950245058	0.493946882922312
Merged-chr11-114988732-2	chr11	114988232	114989232	+	819.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145437, intron 1 of 3)	B4A|SINE|B4	1154.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	6.67630956910055	6.77243172853028	6.80489798224784	7.18970396993204	7.3788589235157	7.03403177315228	0.72139616044238	0.00414393977961232	0.0533264678598797
Merged-chr1-119525445-2	chr1	119524945	119525945	+	654.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146103)	promoter-TSS (NM_146103)	-709.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	4.1698019290053	4.10976909196592	4.50144689450434	3.99415085714241	3.93475579204666	4.29344307318452	-0.541790734269445	0.279293731728336	0.67690413694662
Merged-chr2-73487755-3	chr2	73487231	73488231	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1978.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.08694540660903	6.09107538920903	6.22534801520021	5.78167830406954	5.96117923563137	5.98870277539014	-0.377370744110772	0.197880689109289	0.586043439320662
Merged-chr15-36876106-3	chr15	36875608	36876608	+	728.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79179.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	3.24293084479567	3.34664084635447	3.32992046008149	3.21469131535035	3.04223727665532	3.55715617419707	-0.105859261127203	0.870700092258561	0.97016769924676
Merged-chr11-93956379-2	chr11	93955879	93956879	+	982.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008705)	promoter-TSS (NM_008705)	-123.0	NM_008705	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	6.69132144626822	6.98669103667576	7.12086160353239	6.90077474108308	6.87658199719286	6.98908333798619	-0.0289785289884142	0.911639433746143	0.980154516820379
Merged-chr17-35221386-2	chr17	35220875	35221875	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-13635.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	3.47064401293785	3.27069350575119	3.36752813374567	3.5214279415134	3.57144062766167	3.70590365558235	0.835123583137631	0.15328650002501	0.522132925089285
Merged-chr2-157427944-2	chr2	157427444	157428444	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	3651.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.86091248390046	5.51281255868158	5.72213760746869	5.16705835238494	5.16482429627676	5.27119186065589	-0.984203045824068	0.00408539003479198	0.052785269256983
Merged-chr11-86908473-4	chr11	86907986	86908986	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	85276.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.23160563606812	5.37255233401622	5.51221319933551	5.50776100639002	5.29766577456696	5.40193137357919	0.0632779924448323	0.853699877925785	0.965761552111385
Merged-chr13-44760757-2	chr13	44760257	44761257	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	29486.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.22208723087079	2.93750302683697	3.00523870872459	3.19836029407077	3.0195527241649	3.25428633330966	0.407136803897589	0.544351930025103	0.85765692399006
Merged-chr6-34869671-4	chr6	34869165	34870165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	6519.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	8.04307451666774	8.04195380368249	7.78138256963921	7.61027810932149	7.91275386936584	7.74177184879239	-0.287793018624346	0.214301743070037	0.607446165658035
Merged-chr3-133543267-4	chr3	133542763	133543763	+	932.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	1127.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.86414692595705	7.0340025223952	6.69723786980923	6.96965794525713	7.11225175715323	6.75622584025918	0.127779290958111	0.630092853456714	0.894581980828677
Merged-chr5-99238600-2	chr5	99238100	99239100	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	14327.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.6188934233148	4.65723247535665	4.67916405029627	4.57860845021323	5.10398665141393	5.16386553540625	0.72852082304575	0.0852074374926756	0.386402946468995
Merged-chr9-78463569-4	chr9	78463077	78464077	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 9 of 11)	intron (NM_026658, intron 9 of 11)	15367.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	5.97867341555691	5.94105446038855	5.62716614408026	6.00584337971399	6.14738709535221	5.66134312494096	0.173709255250894	0.597746027656556	0.88045850321281
Merged-chr8-125569962-4	chr8	125569472	125570472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357372)	promoter-TSS (NM_001357372)	-109.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.83757057446809	6.67407320075269	6.17751122923647	6.63649127785057	6.42435359231226	6.44724383148139	-0.159138268411699	0.599882889285311	0.881284193782591
Merged-chr6-42296369-4	chr6	42295892	42296892	+	888.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9707.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	2.66253738874335	2.76664250957684	2.84263700451138	2.65785237578435	2.63039179205904	2.60630500250738	-0.680387810678717	0.362602260591933	1
Merged-chr1-191875092-1	chr1	191874592	191875592	+	561.0	f1_balb.idr	Intergenic	Intergenic	-31689.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	5.51559973728587	6.0851091842367	5.84350044912062	5.21719170838941	5.33799846615003	5.32642267802825	-1.02189641228621	0.00392658943255925	0.0512346955471836
Merged-chr4-10920600-6	chr4	10920181	10921181	+	931.263916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	46183.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	3.77953570871359	3.59646557336555	4.04468448029883	4.14414800011452	4.29331280212962	4.37411056066022	1.38195864124545	0.00764169133154558	0.0832885278864512
Merged-chr3-108690240-2	chr3	108689740	108690740	+	756.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029522, intron 10 of 14)	intron (NM_029522, intron 10 of 14)	32059.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	3.71081541740249	3.86133653348752	3.57715230685828	3.49500483418854	3.4703885794836	3.53730990281375	-0.808759399356491	0.152325365027141	0.520263755512759
Merged-chr7-3941145-4	chr7	3940645	3941645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25644.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	3.9850759473686	4.23218949535224	3.95627611358542	3.87147967313369	3.7780055499353	4.0735027232357	-0.497036784579201	0.332379320206448	0.723540667531868
Merged-chr18-84849906-4	chr18	84849417	84850417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	6.24104162543828	6.37215848324588	6.19711449221117	5.86378979838025	5.94318869702799	5.92165685454458	-0.629596952843569	0.0278649995705714	0.199362930719527
Merged-chr1-171347039-2	chr1	171346539	171347539	+	736.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011070, intron 1 of 3)	intron (NM_011070, intron 1 of 3)	1364.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	3.66137096247324	3.23586397532793	2.95220898044262	3.23552371508191	2.92744339677803	3.22078913806955	-0.753673204647987	0.304741080916141	0.701067097814987
Merged-chr1-165622838-2	chr1	165622338	165623338	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	11703.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.37654535813595	3.691658782048	4.00672463844832	3.49689039926987	3.47041418860889	3.65430355167995	-0.586936830398447	0.330670409282896	0.722068584584995
Merged-chr4-141160423-3	chr4	141159934	141160934	+	852.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	12512.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.16676503651797	6.25073684311999	6.2172916912809	6.54295563939975	6.71074925758659	6.62841244197258	0.683194571368556	0.0102853952743505	0.102457460791112
Merged-chr6-34610666-3	chr6	34610231	34611231	+	767.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MER94|DNA|hAT-Blackjack	12227.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	3.52919004217266	4.10539611776884	3.8881841571684	3.91323504816534	3.83924830887896	4.05291995296519	0.206570487807534	0.711445515009566	0.924661173262022
Merged-chr7-90023195-4	chr7	90022699	90023699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5960.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.68611168195647	6.64759815350033	6.62345259171546	6.7896506540931	6.82270435250768	6.73126419399222	0.205288414831674	0.410158812818785	0.783116615634315
Merged-chr4-129063280-4	chr4	129062778	129063778	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	ID4_|SINE|ID	5007.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	5.55815319569551	5.52010064240302	5.69358352846512	5.30446539429554	5.47557623545154	5.67889613532469	-0.18766351000431	0.574700235564666	0.870862343796639
Merged-chr2-152804698-2	chr2	152804198	152805198	+	936.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23791.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	6.88318143962559	7.12861310923056	7.11884306077238	6.73577465198677	6.74019184508991	6.54100358529241	-0.562789931962827	0.0286996825510929	0.203135245729856
Merged-chr11-88994558-3	chr11	88994094	88995094	+	729.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-4809.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.52848075332919	3.55885546627612	3.73678815038511	3.1794739509922	3.43209017050957	3.50222827294449	-0.849572411782745	0.159833196317399	0.532314801891137
Merged-chr10-8787844-2	chr10	8787344	8788344	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 5 of 19)	intron (NM_175155, intron 5 of 19)	98226.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.61740377977914	3.70123051978795	4.0643322450399	3.78229272580774	3.47835264909465	3.54417349091042	-0.647132372184183	0.263777564041553	0.661754260221591
Merged-chr9-54555253-4	chr9	54554736	54555736	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	4843.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	4.38299645953533	4.45896094056293	4.53424408237633	4.32947319454566	4.01114509882637	4.56088747520078	-0.392790869148741	0.406899289802158	0.781142268902047
Merged-chr10-95515672-3	chr10	95515175	95516175	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	CpG	513.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	8.67596860133564	8.7469896294186	8.47857813509298	8.4941452164299	8.3736030788177	8.61744305970458	-0.203960249748649	0.337276164615722	0.727206670742538
Merged-chr3-79238329-2	chr3	79237829	79238829	+	959.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	25410.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.42086885557006	6.59149489443782	6.64773006159647	7.35832310168219	7.62834371115401	7.38197603000172	1.39400732095338	2.90476618566111e-08	2.39224528390039e-06
Merged-chr7-44753020-4	chr7	44752512	44753512	+	731.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133945, intron 2 of 14)	ORR1E|LTR|ERVL-MaLR	4383.0	NM_133945	101568.0	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	3.67963722690284	3.88727220378165	4.19612423938725	3.87313936557224	3.6419160281991	4.00138034022387	-0.279568547237104	0.613006876243903	0.886978895339216
Merged-chr16-91650147-2	chr16	91649647	91650647	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019973, intron 1 of 4)	intron (NM_019973, intron 1 of 4)	2323.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	3.14370835015149	3.12645861586483	3.32346241470414	3.60719309691541	3.32880976156498	3.15821851293798	0.744082032585754	0.247328042536545	0.644262334889673
Merged-chr4-128978704-2	chr4	128978204	128979204	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14520.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	4.1567897844911	3.98086624411849	4.60919563846668	4.34730808165858	3.91455285603375	4.56449164063742	0.0738587834189905	0.890860066231165	0.974581703799143
Merged-chr7-140123329-2	chr7	140122829	140123829	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2328.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	5.24580111261727	5.32728314465694	5.56331089134718	5.70743383071838	5.88379165661826	5.83109223987591	0.819152583265053	0.0121473789613911	0.115199351335699
Merged-chr16-33693677-3	chr16	33693150	33694150	+	737.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	MTD|LTR|ERVL-MaLR	9184.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	3.09845915160384	3.33483122509897	3.34421301925715	3.42610843056177	3.46400538828819	3.18098418225066	0.422633743887892	0.504655583382861	0.837806481766929
Merged-chr6-13874129-4	chr6	13873628	13874628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2559.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	5.61544692077781	5.7516108547776	5.36166838480043	5.61559686927388	5.81405201208684	5.52054891348567	0.12562334371314	0.709857027357379	0.924148005169415
Merged-chr17-80207861-1	chr17	80207361	80208361	+	678.0	f0_balb.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-556.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	5.41190336723854	5.28567068907159	5.26165626296151	5.31578223109649	5.42499117083089	5.12054674726662	-0.0393099104972204	0.910756979609651	0.979969158480567
Merged-chr9-75434716-4	chr9	75434236	75435236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6788.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.8479264448374	7.79219416917896	7.66237585023725	7.70274165330137	8.16188837573002	7.5422979781564	0.0989367904307238	0.705011716217765	0.922687087430656
Merged-chr12-54983324-2	chr12	54982822	54983822	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 2 of 26)	intron (NM_013815, intron 2 of 26)	3014.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	2.91311262499507	2.95645331787048	2.95918166390671	3.05691289628343	2.75612989956757	3.20335201392983	0.322672913316311	0.648550265542246	0.901859560058813
Merged-chr3-129532322-4	chr3	129531835	129532835	+	920.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130450)	promoter-TSS (NM_130450)	-51.0	NM_130450	170439.0	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	3.62349456546093	3.48300806029878	3.63283814878542	3.07143357655107	3.28777824855134	3.38597235273985	-1.27430635486511	0.0416621836563091	0.255218065057363
Merged-chr11-120580356-4	chr11	120579858	120580858	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133796, exon 2 of 6)	exon (NM_133796, exon 2 of 6)	1262.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	6.70846793059792	6.77361628444132	6.92149297729192	6.66744454623274	6.69509687870574	6.58144682430178	-0.22852649472024	0.369605981215113	0.754241195123084
Merged-chr4-97773361-4	chr4	97772855	97773855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4271.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.10354245715836	5.95707601497612	5.91056231494569	6.33833777752581	6.67034426037103	6.24785322290887	0.74646156252807	0.0123577795757724	0.116583460650892
Merged-chr1-136580412-2	chr1	136579912	136580912	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44489.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.02878431617079	4.92575013987159	4.8772682428812	5.18730708207267	5.36267106025835	5.40973114706006	0.771287394554098	0.0332861529940801	0.222588943046807
Merged-chr2-10080494-4	chr2	10079970	10080970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	40.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	8.05463085559671	8.71938594133832	7.97417355157564	8.14869316464774	8.57455614336044	7.95004765421484	-0.0623672721773938	0.836588929879815	0.962001762335242
Merged-chr13-10109865-4	chr13	10109383	10110383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	250920.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	4.79669924790594	4.7493771514137	4.62279377065692	5.09502116092209	4.81345921642567	4.99854461343153	0.53286390124569	0.177939299056995	0.55892688546374
Merged-chr1-16571142-4	chr1	16570628	16571628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073122, exon 5 of 5)	non-coding (NR_073122, exon 5 of 5)	48210.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	5.43293655739456	5.4704745430818	5.36036683419447	5.69142717402612	5.42678718038148	5.1894400646099	0.0666418889396866	0.849471230227842	0.964686793473289
Merged-chr2-131096258-1	chr2	131095758	131096758	+	656.0	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-9493.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	4.50513486762511	4.47516898932549	4.61393108365609	4.79975920046274	4.5454075879045	4.83135752138333	0.468961655864612	0.262081770668884	0.659947342144308
Merged-chr9-41157251-12	chr9	41156498	41157498	+	924.3784789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	CpG	1064.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.89153374270639	5.94204452861955	5.82818104967276	6.43729213945858	6.04061407352594	6.0137751139951	0.498452266785301	0.106073064251512	0.434728724353921
Merged-chr6-52012610-4	chr6	52012106	52013106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018773)	promoter-TSS (NM_018773)	-57.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	6.83314716570638	7.10484483827814	7.46567286823914	7.36143826788454	7.33066776455889	7.3922196268355	0.311121280696469	0.247361010763092	0.644265503899033
Merged-chr1-9815965-4	chr1	9815478	9816478	+	891.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	17848.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	3.49455621480684	3.3015624564254	3.52685688623247	3.34581157025514	3.33007118460899	3.43705792281041	-0.278104532210292	0.640034022952185	0.89826778327701
Merged-chr17-30574744-3	chr17	30574239	30575239	+	992.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	1548.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	5.43806612797583	5.29184627476831	6.13957983582351	6.90258829832522	7.07905569185207	6.93988019919342	2.19623475602507	1.48076544967197e-10	1.91619800211983e-08
Merged-chr11-61653220-4	chr11	61652719	61653719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-102.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	5.71495957364545	5.5932546997176	4.95564801076904	6.07192050055794	6.06384917683799	5.5420272352176	0.809750797404091	0.044088280952992	0.264236554359869
Merged-chr14-120303126-3	chr14	120302615	120303615	+	981.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-3337.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.57102531446699	3.73056966937598	3.70552791695163	3.85290426218343	3.72288062626115	3.66957602624309	0.276820490741025	0.608217131271656	0.884934708752592
Merged-chr12-70233744-4	chr12	70233222	70234222	+	827.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045174, intron 4 of 4)	intron (NR_045174, intron 4 of 4)	5881.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	3.5608391067065	3.82337956452758	3.83401351646878	3.94356775947372	4.09033687231515	4.04933721857718	0.89959197149365	0.085539726424057	0.387288581798505
Merged-chr4-86943793-1	chr4	86943293	86944293	+	684.0	f1_balb.idr	Intergenic	Intergenic	69379.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.25050879829724	3.30622827806049	3.1264350908867	2.93604198830877	2.75917615416445	3.25561706493819	-1.0805623478349	0.132537896691344	0.487133411718422
Merged-chr12-91767965-2	chr12	91767465	91768465	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	18471.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.9389623538331	4.89999346601349	5.11653129840034	4.82623695079552	4.89749801264022	5.24140767598938	0.0181130923432081	0.962956417476294	0.991018409557203
Merged-chr18-9712319-3	chr18	9711833	9712833	+	696.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	4685.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.21377028977695	3.98934082239116	4.38637998206007	3.33465546022847	3.53103160987701	3.78938614791956	-2.11645426762457	0.00034924676577428	0.00789891951251597
Merged-chr7-81307757-4	chr7	81307228	81308228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 9 of 21)	intron (NM_008803, intron 9 of 21)	37506.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	6.08889365418005	5.86514649378667	5.6282366757825	5.92417092876735	6.00515275185647	5.50789200294439	-0.0714669787507846	0.834472295729229	0.961319929864283
Merged-chr10-71261836-3	chr10	71261323	71262323	+	935.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 3 of 6)	intron (NM_145420, intron 3 of 6)	23439.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	4.3069682384253	4.52906930021456	4.43259381154784	3.95602851830467	4.30714760382128	4.18927984083104	-0.698899498741846	0.141975928839275	0.503024615152583
Merged-chr3-9791250-2	chr3	9790750	9791750	+	660.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	L1_Mur3|LINE|L1	42429.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.31406263931431	3.54352367915977	3.36596942676004	3.15736574708411	3.20984078278328	3.01582142946877	-1.14526509816271	0.0796875580568179	0.37330493924061
Merged-chr2-4605911-2	chr2	4605411	4606411	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 10 of 11)	intron (NM_001177844, intron 10 of 11)	46157.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.87934036901976	2.73545004783765	2.88055954687535	2.53262568613489	2.62212291488164	3.17381906036485	-0.131610533460265	0.870564190382142	0.970084781962666
Merged-chr14-31388889-1	chr14	31388389	31389389	+	552.0	f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B4A|SINE|B4	28788.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.79724915658269	6.70725131047908	6.80251868970876	6.41947461175798	6.62742025823954	6.40735880920604	-0.42903874880068	0.10180836598261	0.425710869100299
Merged-chr7-83668751-2	chr7	83668251	83669251	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 9 of 18)	intron (NM_001360088, intron 9 of 18)	-13256.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	2.17025073193388	2.27598275866352	2.38240103919121	2.50559132725707	2.37319165401073	2.99398857971407	2.3299199037834	0.0117480098128226	0.11252773115061
Merged-chr7-98084852-4	chr7	98084345	98085345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 16 of 48)	intron (NM_008663, intron 16 of 48)	24403.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	7.07865294046953	7.49072977785455	7.15656775917565	7.3131993139949	7.51710888034064	7.01365426799521	0.0715849302248396	0.793769703456436	0.950531747588938
Merged-chr11-48816444-4	chr11	48815914	48816914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145377, exon 1 of 6)	exon (NM_145377, exon 1 of 6)	977.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	7.05474540555338	6.91195908326022	6.86257270476984	7.01419983235289	7.02192247653402	7.19601740045139	0.191736422190031	0.434047575163196	0.79814689082248
Merged-chr19-3388267-2	chr19	3387767	3388767	+	990.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-590.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	4.96557345075189	4.97906167567474	5.21069186052667	4.74942865656455	4.76946689978099	4.98627767459445	-0.481316098328032	0.212897956290177	0.605510430236296
Merged-chr5-67829630-2	chr5	67829130	67830130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	17801.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.63077058481038	4.9145853505044	4.61035919060821	4.99870742222863	5.39715726880946	4.8475778871846	0.833319769591788	0.0479638882486532	0.27765265155099
Merged-chr13-95375236-4	chr13	95374648	95375648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025630, exon 1 of 14)	5' UTR (NM_025630, exon 1 of 14)	209.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	6.94718969616917	7.11255006557536	7.10529849108323	7.38761494089133	7.08351799267842	7.07286358978294	0.2043125584632	0.414105175609108	0.785615201854629
Merged-chr14-99104680-1	chr14	99104180	99105180	+	1000.0	f0_balb.idr	intron (NM_029320, intron 2 of 17)	intron (NM_029320, intron 2 of 17)	-4910.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	2.94044851119241	3.016638065282	3.30117010683815	2.84685190380563	3.12097422371942	3.09836628114284	-0.267510874268401	0.700779608905907	0.921002460903367
Merged-chr10-95291763-3	chr10	95291259	95292259	+	690.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	B3A|SINE|B2	31950.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.25926281781104	6.23159880903386	6.34874830523786	6.23137324171322	6.39242739297617	6.37065753008934	0.0957926128022111	0.72571292286034	0.929707128236285
Merged-chr15-64091985-1	chr15	64091485	64092485	+	598.5	f0_balb.idr	intron (NM_001276461, intron 28 of 28)	intron (NM_001276461, intron 28 of 28)	-31537.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.0984637670695	3.90107998413575	3.88173304970647	3.67131580874863	3.53692725403393	3.39049915975648	-1.42657380302565	0.012347120153166	0.116528606686107
Merged-chr11-3169639-2	chr11	3169150	3170150	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23813.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.65535858658162	6.11775797397723	6.0414854798131	4.61128420840435	4.02263243068172	6.74191525135684	-0.311536027412072	0.839781103778521	0.962784121274377
Merged-chr11-97830110-4	chr11	97829634	97830634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10646.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	8.46792446826698	8.61641785139351	8.15398203197437	8.25758204927914	8.55223089769534	7.91068071632756	-0.217929622002622	0.410967013826799	0.783785606749474
Merged-chr4-53159903-4	chr4	53159421	53160421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013454)	promoter-TSS (NM_013454)	-26.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.7041427339735	7.40233343471346	7.50531679169133	7.5551388884177	7.68920138957778	7.19986318284408	-0.0540681083907565	0.832997684224424	0.960900298881182
Merged-chr14-76179588-4	chr14	76179101	76180101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68710.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	6.00569806551148	5.51344368735947	5.93824218739342	5.94305423384656	5.72343781753742	5.95332816655553	0.0686942479311815	0.836161883453412	0.961948623063023
Merged-chr11-9347869-4	chr11	9347428	9348428	+	765.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 28 of 61)	MIRb|SINE|MIR	155986.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.38062490136179	2.34474351359141	2.26411130737823	2.53773890789498	2.27335727363811	2.53745765298517	0.753409250570009	0.372816150680619	1
Merged-chr17-28523213-4	chr17	28522712	28523712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7649.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	4.99295679990559	5.23849517289699	5.17701986696897	4.17260347178886	4.50355548218015	5.14906374209724	-1.04514767438793	0.0331533994185719	0.222078216430533
Merged-chr18-39141195-4	chr18	39140699	39141699	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	MTD|LTR|ERVL-MaLR	148054.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.99527224172687	6.26380309140153	6.21702769435592	5.96459829817954	6.30039876690134	6.33527107343132	0.080258404118075	0.789051823207732	0.949092571737679
Merged-chr5-66137424-4	chr5	66136959	66137959	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	13519.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.31868397370381	6.37257254886594	6.03991546752801	6.18779836373761	6.17448005862623	5.90397877731438	-0.264459825009291	0.374362192576485	0.758058822552447
Merged-chr12-17683478-1	chr12	17682978	17683978	+	658.5	f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-7331.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.12542354394895	3.9788220747973	4.25271564018506	4.36599735814456	4.19564994848238	4.3201565419435	0.487791814714588	0.298814619869973	0.695489982940998
Merged-chr8-71469108-4	chr8	71468627	71469627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001294259)	promoter-TSS (NM_001294259)	-67.0	NM_001294259	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	7.17372773388038	6.6949593902822	6.63023038071348	6.86286671593858	6.8536943093766	6.70635443516143	-0.0812519084411865	0.775051398969073	0.944529134174156
Merged-chr1-184022597-2	chr1	184022097	184023097	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	11401.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	4.79632271404109	4.91066372260228	4.99485641814326	4.95638972020586	4.94086302225088	5.09270600265085	0.20753475609106	0.582165881554039	0.873592284036202
Merged-chr1-46873636-2	chr1	46873136	46874136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20018.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	5.54742365637214	5.14845980983242	4.91879144636323	5.36127665531118	5.25328567569773	4.98627871613625	-0.0545587145849175	0.891485517320157	0.97481556123419
Merged-chr7-41633030-4	chr7	41632518	41633518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	-513.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	6.77523754680336	6.96456108192363	7.01067333533558	7.10115239769876	7.29711655078405	7.05542120457736	0.372406663588631	0.135002054934239	0.491114020328254
Merged-chr2-49745548-2	chr2	49745048	49746048	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42138.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	3.97206484830041	3.89990904499026	4.11790333886905	4.07267945282486	4.21093905916479	4.18576069353092	0.482711031739401	0.317179565173422	0.711122174411934
Merged-chr10-128548502-3	chr10	128548026	128549026	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	642.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	8.1814335636457	8.43229641469104	7.89844587481512	7.82913369557132	8.47548233777182	8.06278814953735	-0.0519207126537872	0.85094310018649	0.965007006719441
Merged-chr1-174040940-4	chr1	174040437	174041437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146717)	promoter-TSS (NM_146717)	-996.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	6.91585799554465	6.99316709089348	6.60249779634703	6.79610603360159	6.93744722157597	6.77824063451299	-0.0227677404931851	0.9311149445566	0.984775837432654
Merged-chr19-7453059-2	chr19	7452559	7453559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053076, intron 1 of 6)	B2_Mm1t|SINE|B2	30232.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	3.25938514331743	3.58725194223601	3.74472422078813	3.27697617567547	3.38967542112536	3.71804317802305	-0.260770038144156	0.679061294426882	0.913581173754914
Merged-chr12-84218893-4	chr12	84218403	84219403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-22.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.60864276801105	8.60572988707274	8.21896207389368	8.09410175181357	8.14508693988636	8.01260621179108	-0.572460392178122	0.011166827973066	0.108700213147271
Merged-chr10-81524443-4	chr10	81523877	81524877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010304)	promoter-TSS (NM_010304)	-152.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	6.84645394522562	7.30195865830005	6.82595904423764	7.16835020848416	7.41964602154673	6.64890172346943	0.169253386061545	0.590987386688357	0.877301111216348
Merged-chr12-69363704-2	chr12	69363204	69364204	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6528.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.21656334183602	5.00827883693645	5.17380244524677	4.91088155382637	5.14099426422282	5.41653912960388	0.0627663226264303	0.868777305253337	0.969726867826344
Merged-chr18-62189464-4	chr18	62188967	62189967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9367.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	7.86342144959463	7.51349802852072	7.4680737539644	7.79176579573432	7.80764368275028	7.5761650440179	0.145800963166571	0.550569959811008	0.860709619458349
Merged-chr11-87443496-4	chr11	87442988	87443988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	15897.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.53275166060065	6.47041717923834	5.98654123538864	6.11732456140769	6.40272601145103	6.04849076942514	-0.256701242265827	0.417587267405023	0.788155000368307
Merged-chr1-151040569-4	chr1	151040077	151041077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-47142.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	7.26378791573208	7.61454471989025	7.28381840509947	7.68035843342755	7.96219751119874	7.1237936003395	0.355882593315024	0.232117611476283	0.628414299196787
Merged-chr5-88566638-2	chr5	88566138	88567138	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	1598.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	6.03899487083131	6.13495985772249	6.10405788277793	5.98792612025262	6.1483449585171	5.69199248775656	-0.208134083494569	0.499325005846341	0.834407103145886
Merged-chr17-5492562-4	chr17	5492064	5493064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146073)	promoter-TSS (NM_146073)	-36.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.05102306349846	7.95522337327403	7.9768248114026	8.10753204566889	8.14736080265137	7.91679175057181	0.100126061954522	0.639703572940095	0.898199312621371
Merged-chr4-59783941-4	chr4	59783457	59784457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013577)	promoter-TSS (NM_001013577)	-102.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	7.26897787151844	7.49667758886426	7.20080073760766	7.19628891650495	7.34045935506003	6.99473469016045	-0.208081265556686	0.408722216765843	0.782282702595857
Merged-chr2-119787534-4	chr2	119787012	119788012	+	916.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163701)	promoter-TSS (NM_001163701)	25.0	NM_177294	68925.0	Mm.30496	NM_177294	ENSMUSG00000034032	Rpap1	1190005L06Rik|A730023M06Rik|AU041788|AW107702|mKIAA1403	RNA polymerase II associated protein 1	protein-coding	4.91673764462696	5.10459047160757	4.82735756594078	4.93624833645523	4.64831000752102	5.03760146946674	-0.195271054265373	0.626003237532889	0.892770422921587
Merged-chr12-54998710-3	chr12	54998215	54999215	+	884.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12379.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.45003740447443	4.30573403646551	4.42008377965029	4.29068450184657	4.18231600012167	3.96331147818336	-0.626394594298548	0.183630092759799	0.566924177418387
Merged-chr13-73793291-4	chr13	73792780	73793780	+	704.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 7 of 24)	ORR1D2|LTR|ERVL-MaLR	29583.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	2.58339513372259	2.65257453567703	2.7639920624151	2.73953925687102	2.57202620502152	3.1202914274798	0.817799902332485	0.29375914526438	0.690424156263798
Merged-chr6-122569698-2	chr6	122569198	122570198	+	750.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	15889.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	4.23565040858107	3.90543120777797	4.20373842039464	4.1093841608574	3.7949600252864	4.55083622417759	0.164650939410843	0.762599625552991	0.941627435789952
Merged-chr12-84767668-4	chr12	84767171	84768171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	5441.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	6.80154722023427	6.64398420698102	6.63284551765014	6.71331870338777	6.92862987054395	6.72464592035106	0.158526821158419	0.539193972289185	0.855787055365757
Merged-chr10-8888379-4	chr10	8887878	8888878	+	949.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2308.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.27332623893961	3.05711605332248	3.20960057511487	3.13138795501473	2.83172910470017	2.9213388516199	-0.984325070154942	0.154909149454819	0.524183835210924
Merged-chr12-85380523-4	chr12	85379993	85380993	+	945.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-5776.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.48256843808095	6.47411743055462	6.60102994364906	5.81270510935345	6.09105587609299	6.14597477843358	-0.822437910792424	0.00409227143169957	0.0528413596041058
Merged-chr4-144899847-2	chr4	144899347	144900347	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	6710.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.84408410530354	5.05554380349261	5.29330535918384	4.71526642728131	4.92256973070834	4.78865090402816	-0.547089978006963	0.171767276963362	0.550097814813575
Merged-chr14-34747193-4	chr14	34746697	34747697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001301330, exon 19 of 19)	3' UTR (NM_001301330, exon 19 of 19)	-72939.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	3.25740833294601	3.58487267461957	3.32049605384165	3.3438680296648	3.1954250609565	3.39229526483764	-0.359585326735647	0.563303297786653	0.865926383742263
Merged-chr10-127553694-3	chr10	127553174	127554174	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 59 of 88)	intron (NM_008512, intron 59 of 88)	-19115.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.38092693433318	2.41392531589672	2.63229823448676	2.28615064251691	2.20320176908728	2.70534565778884	-0.386283709609054	0.661107023661514	1
Merged-chr15-75981949-4	chr15	75981448	75982448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163518, exon 1 of 1)	exon (NM_001163518, exon 1 of 1)	337.0	NM_001163518	223648.0	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	7.00869486473829	7.18853874649366	7.01552245107889	6.60376276393728	6.8494560974668	6.56582140665362	-0.596762792034695	0.0213381822584308	0.168550167966538
Merged-chr2-51094881-4	chr2	51094382	51095382	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	54229.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	3.52844666825024	3.45900318843771	3.18009859469347	3.19838726223358	3.24844606647574	3.31310438857452	-0.605338481339281	0.335232415875368	0.725385451575238
Merged-chr5-92279351-4	chr5	92278857	92279857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1176.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	5.12344781171795	4.89419706998516	5.19989961212171	5.55492753468868	5.89582195044016	5.99956197177062	1.46111882141421	3.87314370121873e-05	0.00127786098767251
Merged-chr6-122822049-2	chr6	122821549	122822549	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1865.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	5.00782055378687	4.97611866555939	4.74058818461136	4.96525248668012	5.17413415556379	4.92544173520539	0.244725720213626	0.526626762611164	0.849575940031528
Merged-chr13-55714688-4	chr13	55714168	55715168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175150)	promoter-TSS (NM_175150)	18.0	NM_175150	69672.0	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	6.14990127889445	6.21255417881562	6.4440915625373	6.18458242367706	5.79424522947418	6.16405203713393	-0.368747335387187	0.228750253143287	0.624004805277215
Merged-chr11-117696741-2	chr11	117696241	117697241	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	RMER13B|LTR|ERVK	42452.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	2.94808954146627	2.83825169138697	2.77785024644794	2.49957025430044	2.44637327576198	2.59704462059819	-2.11833893619164	0.00956113012279412	1
Merged-chr12-35050701-3	chr12	35050206	35051206	+	695.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	3517.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.12883504756865	6.17277475584309	6.00166063252672	6.45246003896216	6.8112521122496	6.2025143471584	0.691791034567794	0.0242448551245804	0.183326269479596
Merged-chr2-26499645-2	chr2	26499145	26500145	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4177.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	5.20267909013774	5.08075212940047	5.52460163061259	5.38316572026354	5.54699270569342	5.41743073041703	0.367263883259645	0.301823565157124	0.698499477656988
Merged-chr19-53332169-4	chr19	53331671	53332671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	1763.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.92998539921861	7.12045697928236	6.87659162426158	6.93426590539151	7.38434285668598	7.04750753809284	0.243675504524034	0.361176712301655	0.747154411088087
Merged-chr2-127270712-4	chr2	127270228	127271228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_139308, exon 1 of 8)	exon (NM_139308, exon 1 of 8)	499.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	8.6038712953674	8.88104400768792	8.36716124331526	8.43932105723333	8.50416646565146	8.27242686828979	-0.316488466267016	0.17732978934793	0.558255726686941
Merged-chr2-90841355-2	chr2	90840898	90841898	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-5757.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	3.96004446519704	3.73948588770166	4.27912896851597	3.98457281365841	3.75050626226501	3.94804711958819	-0.327059396451485	0.543153722437677	0.857503746069524
Merged-chr15-81086932-2	chr15	81086414	81087414	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	18133.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.90176542529694	4.29939778776154	4.23665062087952	3.87684110935866	3.619810851265	4.38486401758929	-0.467367381978495	0.41373017672241	0.785359020041643
Merged-chr5-109563066-3	chr5	109562577	109563577	+	894.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-4084.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	2.45348394449901	2.4174805677668	2.60093882429054	2.47847019212684	2.43135093352578	2.48701981289627	-0.149104540564129	0.850518075871106	1
Merged-chr12-72490219-4	chr12	72489715	72490715	+	887.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030070, intron 23 of 24)	RLTR19|LTR|ERVK	-46142.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	3.88614291795629	3.74458985037462	3.93882851192017	3.92371979342202	3.67978554627039	3.4042500971466	-0.533388094883011	0.356826233879193	0.743460467581681
Merged-chr13-63259861-2	chr13	63259361	63260361	+	606.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	19832.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.72553800078434	2.89280420461792	2.83092334522405	2.89202886819668	2.61087406475673	2.9635807081923	0.0362211444520108	0.960950056294957	0.990386809359123
Merged-chr2-168579266-4	chr2	168578763	168579763	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	11102.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	4.13424032333514	4.11760163688442	3.81447094918674	3.70903692770563	3.58464892614952	3.7791247396357	-1.12707074110091	0.0350354792254286	0.22970829966663
Merged-chr8-120618278-4	chr8	120617734	120618734	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	16148.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	4.30581246904583	4.00657625102823	4.06443241836095	3.92864651715673	4.11065638920017	3.98539124175086	-0.346674375871005	0.485759695984834	0.827570845088965
Merged-chr9-90276844-2	chr9	90276384	90277384	+	902.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-6115.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.86222508049242	4.69026626233782	5.10547648412181	5.47395365936418	5.12165852696622	5.23461633074221	0.839370215645373	0.0301605515420157	0.209623867529773
Merged-chr19-43926804-2	chr19	43926304	43927304	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	13394.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.59183814669103	3.59295453450295	3.75164461521439	3.2325567489019	3.12611078273689	3.72482478203216	-0.982711153698897	0.127898596088901	0.478257522171726
Merged-chr6-125302313-1	chr6	125301813	125302813	+	589.0	f0_balb.idr	Intergenic	Intergenic	11572.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	3.86269318566863	3.98237272772411	4.21782931743011	3.78488244927327	4.08852292464099	4.24205567285597	0.0782451156631621	0.880498282916639	0.972540920690587
Merged-chr5-30666723-4	chr5	30666228	30667228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-158.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	7.34610683226688	7.73477676887537	7.31999757742783	7.44025939161881	7.5655476093176	6.95626888432487	-0.189998485921412	0.502952186671397	0.836691193058519
Merged-chr7-110386503-4	chr7	110386007	110387007	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	164804.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.17110244541915	5.36496386919407	5.57189195254068	5.25617686504961	5.12764452498914	5.8907377720803	0.16255189903833	0.686492043397424	0.916761528494478
Merged-chr17-31021044-4	chr17	31020534	31021534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36660.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.01020835279657	6.86545048879676	6.73895114578334	6.59436560172356	6.38029286858142	6.0760601772449	-0.797974830177368	0.00542028253868411	0.0648004122814408
Merged-chr17-56266525-4	chr17	56266035	56267035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9742.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	7.91038408346147	8.00642491882595	7.48963404238772	7.83536853845988	8.23369705227534	7.50315417149558	0.106895574535349	0.711273329616345	0.924628659085065
Merged-chr3-129949589-4	chr3	129949085	129950085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	20621.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	3.60744528038112	3.69509394013065	3.81662961639214	3.72905172186831	3.65332601338009	3.83655368608454	0.107469591535256	0.841543229021245	0.962980526719381
Merged-chr6-129233038-4	chr6	129232559	129233559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 3 of 3)	intron (NR_040268, intron 3 of 3)	4986.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.15290169706855	6.95087079244826	6.97668167540073	7.03518915020662	7.14275688626217	6.6081449509231	-0.106507174087781	0.696711180661865	0.919584129006226
Merged-chr1-134062274-2	chr1	134061774	134062774	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	16881.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.49062466589322	3.78024653421895	3.49886284557736	3.19015331332238	3.25527883948722	3.40361094210865	-1.23362712112639	0.0445613783165847	0.266063660086566
Merged-chr12-33170306-4	chr12	33169796	33170796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	22610.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.0315402352244	4.15764168282946	4.1173693183676	4.47272306218163	4.45909673939123	4.03478398047221	0.66671175369096	0.16799299978645	0.544265137492929
Merged-chr2-120663911-4	chr2	120663398	120664398	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54303.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	4.72228194693981	4.28309704767015	4.46142525848794	4.33678937015109	4.14250078890788	4.40041127922643	-0.553593709579839	0.234001380694511	0.630244930563503
Merged-chr15-68168000-4	chr15	68167503	68168503	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 8 of 13)	intron (NR_152182, intron 8 of 13)	90853.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.6567312273724	3.77268634393255	3.91943708909546	3.49917705141165	3.55748118114238	3.64362477339296	-0.743061078121754	0.179277814078018	0.560785822158022
Merged-chr5-3358953-4	chr5	3358457	3359457	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15064.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.76885502740082	6.49165242213441	6.38847989804864	6.52588670355545	6.80169712466695	6.80461366951136	0.237223295500054	0.395218502463927	0.772579826044138
Merged-chr14-54912561-3	chr14	54911993	54912993	+	589.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360406, exon 2 of 10)	exon (NM_001360406, exon 2 of 10)	639.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	3.41742085755028	3.41023803970473	3.75623779189708	3.49718760339985	3.09212884441561	3.52801819644771	-0.559808637485424	0.381462644566275	0.76312705813648
Merged-chr7-100160298-2	chr7	100159798	100160798	+	883.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026010, exon 2 of 2)	exon (NM_026010, exon 2 of 2)	1021.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	4.65127303412376	4.47085626603887	4.50429800763583	4.50488481691438	4.5988911459665	4.3952584153415	-0.0899322345746478	0.833526322620116	0.96108264611081
Merged-chr2-145370542-3	chr2	145370036	145371036	+	914.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	127925.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	4.34063854134927	4.54235752229471	4.20564990575198	4.46766637325675	4.42622317986244	4.50109159076855	0.211303469307556	0.635986491692693	0.896874178034804
Merged-chr6-29253020-2	chr6	29252520	29253520	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-19468.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.111850308622	2.73614243000782	2.76934559041996	3.41899098483896	3.217857225992	3.17087911051429	1.74235701627635	0.021471514764732	0.169298000620091
Merged-chr4-11579253-4	chr4	11578750	11579750	+	970.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-412.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	6.07117794861634	6.18134482352996	6.00911755943531	5.93121051564538	6.25689958485936	6.13684369182975	0.0452435249539763	0.878265920348124	0.971842464414451
Merged-chr1-36100936-2	chr1	36100436	36101436	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	32536.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.16541606761558	3.14430231287505	3.62146754250132	3.20034627507199	3.05325709266786	3.44419020630273	-0.3411354776225	0.611161408414345	0.885964478139286
Merged-chr5-52168669-4	chr5	52168161	52169161	+	906.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042620, intron 5 of 11)	intron (NM_001042620, intron 5 of 11)	21885.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	2.98165601708145	3.12061913390395	3.16773594559081	3.11440588993111	3.10452715049852	3.45308711196118	0.583212184928471	0.376219029549644	0.759097771788036
Merged-chr5-137533641-4	chr5	137533159	137534159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010312)	promoter-TSS (NM_010312)	-353.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	6.48830327497075	6.45652271457183	6.61062655335976	6.722080346541	7.021372591088	6.81135084188666	0.55037127511779	0.0358356138176133	0.232574870689347
Merged-chr17-84647857-4	chr17	84647354	84648354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 10 of 12)	intron (NM_172256, intron 10 of 12)	21355.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	5.09133871291191	4.73499496781863	4.80993510598445	4.67815399146155	4.55171552676787	5.05021470654976	-0.286576368340266	0.500953714164424	0.83533412964393
Merged-chr9-113932770-2	chr9	113932270	113933270	+	728.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1836.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	4.71631818510165	4.53330406522825	4.51065444146125	4.7239630115064	4.69212343214308	4.81780132433814	0.346770017927497	0.396789524133311	0.773765492504153
Merged-chr14-7991557-7	chr14	7991062	7992062	+	898.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 1 of 7)	ID_B1|SINE|B4	2620.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	6.66998931571801	6.93615855406031	6.88257260853258	6.93407675976389	7.26956361985128	6.99678581411486	0.381181625639572	0.145389012460971	0.508470450103079
Merged-chr2-159587293-4	chr2	159586793	159587793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-360048.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	5.7653440222813	5.3102407820691	5.2145405960215	5.26879843616443	5.40468301727175	5.83702014991583	0.106744770287108	0.783586705129435	0.94726085620041
Merged-chr2-104740532-6	chr2	104740043	104741043	+	757.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	2258.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	4.05588652636929	4.25682268834293	4.21066002402113	3.89759647050642	3.86476742086776	3.84394688844441	-0.916188781672263	0.0650839521208191	0.33272950897451
Merged-chr1-23432762-2	chr1	23432262	23433262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49587.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	5.25908055792155	5.65689831095208	5.5061106971795	5.27614389448425	5.39114499162488	5.79819035129784	0.0229277845127301	0.950106940691363	0.988400419899929
Merged-chr11-17010041-2	chr11	17009541	17010541	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1323.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	2.90037530990275	3.1404650570807	3.13315307295048	3.02751191411979	2.97407328277029	3.08988509867342	-0.148857785055869	0.824154982089125	0.958519061691713
Merged-chr18-30584053-4	chr18	30583547	30584547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	311182.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	2.81614719620436	2.74298024777853	2.72740823691187	2.87069637175758	2.94006788640276	2.98364624549275	0.845629737310866	0.232203238008867	0.628473702249027
Merged-chr7-141193076-2	chr7	141192576	141193576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130444, intron 1 of 5)	intron (NM_001130444, intron 1 of 5)	928.0	NM_001130444	15461.0	Mm.334313	NM_008284	ENSMUSG00000025499	Hras	H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras	Harvey rat sarcoma virus oncogene	protein-coding	3.24110971036466	3.31360394472391	3.45103029110782	3.30458712840822	3.0956513321882	3.06393649511183	-0.721530673530058	0.260734127273579	0.658224767876399
Merged-chr10-88383614-4	chr10	88383109	88384109	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	RMER10A|LTR|ERVL	4197.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	2.96604561127752	2.82930212635603	2.88537241229823	3.11922210676781	2.93500429178239	3.01943354391678	0.619765820593903	0.365545395692748	0.750706881219779
Merged-chr8-61666113-2	chr8	61665613	61666613	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-74944.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.96557214545301	4.3112849975878	4.16434860980083	3.8863063307713	3.53786648241876	3.84799844607792	-1.22837061322803	0.0226260049645505	0.175196782159903
Merged-chr5-72269709-4	chr5	72269190	72270190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66347.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.46543388218471	6.11466343364323	6.05604808303057	6.23699400816201	6.00674766792704	5.73190180956688	-0.365111978443791	0.258167896861417	0.655659776470938
Merged-chr9-78493436-4	chr9	78492945	78493945	+	776.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11721.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.25126326315064	3.53707491946242	3.71641259974814	3.62334222852646	3.67255077427736	3.35134445774146	0.183472914709373	0.766082789456242	0.942366894267556
Merged-chr18-44383170-4	chr18	44382649	44383649	+	973.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	2649.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	4.8425971354828	4.83668763679669	4.89217155117352	4.96176332413551	4.83318482136055	4.64125547682146	-0.0671143617141426	0.864422558646035	0.968278303984855
Merged-chr6-124512570-2	chr6	124512070	124513070	+	667.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023143)	promoter-TSS (NM_023143)	-51.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	5.16759955087252	5.16922106094703	5.09946869388472	5.44418323914615	5.24776201402015	5.01908357046797	0.219247801054848	0.547187852846211	0.859256588783723
Merged-chr8-83736171-4	chr8	83735696	83736696	+	845.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	RLTR11A2|LTR|ERVK	5115.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	5.54942936476718	5.38105880458317	5.65651702346185	6.02490108274005	6.10269389677312	5.968363256397	0.924923822285917	0.00277391072479391	0.0396379123456383
Merged-chr3-82793828-4	chr3	82793324	82794324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	7SK|RNA|RNA	82659.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	4.60612439230464	4.68810543905819	4.73749602598917	4.69280525037844	4.56938253906827	4.91084376492437	0.106146156446445	0.796152707849813	0.95140420098761
Merged-chr19-6243037-1	chr19	6242537	6243537	+	584.0	f0_balb.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1369.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	4.89975345684877	4.84122503554591	4.48007013388971	4.85185519218509	5.0405969317602	4.45404605625496	0.125849739106431	0.779390712977942	0.945716196316141
Merged-chr7-98991494-3	chr7	98990913	98991913	+	752.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 9 of 14)	B2_Mm2|SINE|B2	149731.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.2408668018325	3.04859147923058	3.20447833652863	3.05350884871548	3.08840786941725	3.161949960404	-0.287714192199192	0.656024037680049	0.904520810952906
Merged-chr1-59634161-1	chr1	59633661	59634661	+	764.5	f0_balb.idr	exon (NM_001357842, exon 18 of 19)	exon (NM_001357842, exon 18 of 19)	36673.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	3.13753409741701	2.84177207932295	3.33172666688829	3.01372361188706	2.8227490103587	3.01495426482796	-0.745177136808692	0.295663980052016	0.6925798212347
Merged-chr11-117829080-4	chr11	117828555	117829555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-3041.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	8.70310532777759	8.7485787280348	8.39693145267804	8.58240356462542	8.97242615365652	8.38580684114301	0.066978453317657	0.789432165136941	0.94921167421876
Merged-chr8-25043634-4	chr8	25043132	25044132	+	803.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031257, exon 11 of 12)	exon (NM_031257, exon 11 of 12)	-4670.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.27087354196001	5.06246397488228	5.23557684070914	5.51121008267772	5.43884600713462	5.01675856009834	0.322922833209228	0.383583808836889	0.76494131641868
Merged-chr10-20106251-2	chr10	20105746	20106746	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-42674.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.0436822187862	3.42531245421049	3.92772349104972	3.5403938361632	3.32971264126622	3.80664322480047	-0.861758942680908	0.167641890003395	0.543677997560218
Merged-chr11-31804339-2	chr11	31803839	31804839	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20208.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.51690912211008	3.37931021998478	3.23368105123508	2.94241647650956	3.11690774951998	3.24792390353803	-1.18176367805933	0.0746481442404407	0.359576403031063
Merged-chr10-128322456-4	chr10	128321978	128322978	+	996.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019953)	promoter-TSS (NM_019953)	19.0	NM_019953	56530.0	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	6.8660328204238	6.98254615084798	7.18517877032773	7.20958587177938	7.18399620944687	7.01577949037583	0.201816480584849	0.417153077858845	0.787800120346772
Merged-chr13-108041615-4	chr13	108041098	108042098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2876.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	4.88308784941267	4.54292108575619	4.58685838278845	4.89046830687097	4.89360285728064	4.92863506220898	0.494321630372177	0.222491400255391	0.617452037236119
Merged-chr13-8641563-3	chr13	8641061	8642061	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	229483.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.18825672171008	3.52210668143857	3.49975771578393	3.44885960813888	3.39622731724449	3.56988244537088	0.220243027095214	0.716028649084823	0.926567177471454
Merged-chr7-122010620-4	chr7	122010128	122011128	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028758, intron 3 of 16)	intron (NM_028758, intron 3 of 16)	10570.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	3.61306443209813	3.31269756432339	3.43955619906106	3.7385317147129	3.39646975009425	3.5117061788276	0.336968791298216	0.574192395562754	0.870547736051631
Merged-chr13-94164498-3	chr13	94164023	94165023	+	807.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	106727.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.51107905402597	3.55569812113062	3.46591571507833	3.56087858625985	3.22812833099352	3.04635748577446	-0.812538724451429	0.21879788248431	0.613028965107228
Merged-chr15-101257067-4	chr15	101256588	101257588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9758.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.14238149583568	5.88201995439364	5.86258577609534	5.96064617032175	6.08571898479159	5.99652494112219	0.0766767227982072	0.798230017621307	0.951930937621884
Merged-chr12-12299889-4	chr12	12299409	12300409	+	861.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	37770.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.48921851339561	5.7797454204053	5.97618561407667	5.71537746684282	6.08687665125216	5.94680723030152	0.312703601804842	0.347874024205815	0.735872359218958
Merged-chr11-118490935-4	chr11	118490406	118491406	+	848.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285436, exon 14 of 14)	3' UTR (NM_001285436, exon 14 of 14)	14074.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.67129224081948	4.66733719235505	4.4806304438845	3.99421748157555	3.76343730620886	4.19300735939948	-1.76453273420716	0.000293221669180415	0.00683811341064013
Merged-chr8-125489625-1	chr8	125489125	125490125	+	540.0	f0_balb.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3208.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.08682382533918	5.10068290076266	5.40879049488631	4.88519249827795	4.69002275969377	4.82583962029076	-0.865468023812881	0.0251210010914332	0.187585772127432
Merged-chr8-126920568-4	chr8	126920099	126921099	+	938.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25322.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	7.26035333529398	7.27350246191911	7.10248487153351	7.00720809595236	7.13619168970747	6.88240145795593	-0.298843909068242	0.220188671731044	0.614541989464645
Merged-chr11-77784459-3	chr11	77783967	77784967	+	920.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	7232.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	5.557047258316	5.55251666822003	5.49689108702485	4.44340560771503	4.38516419283255	4.59302468618613	-2.38983141247798	1.05238053021837e-09	1.15828676135463e-07
Merged-chr7-79924206-2	chr7	79923706	79924706	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3566.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	3.46892417600496	3.30715924669047	3.28507846053639	3.30993490821608	3.21292313525933	3.24003971627224	-0.423133639950326	0.490545901062837	0.830091427684216
Merged-chr7-142284118-2	chr7	142283639	142284639	+	840.166626	f0_balb.idr|f1_balb.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-9776.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	4.37256682076674	4.46170407503541	4.50016583939064	4.01850772722742	4.08513130082238	4.52665789322098	-0.602035944721225	0.207874377625024	0.59871274535905
Merged-chr4-139168576-2	chr4	139168074	139169074	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	12081.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	5.8328997201323	5.79953807230082	5.95311801340591	6.46194283679166	6.39805721420244	6.35323059758619	0.933727869306094	0.000895432855370574	0.0165387740354439
Merged-chr7-128226531-4	chr7	128226005	128227005	+	977.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10852.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	5.36820909316198	5.3075776048286	5.37742606098678	5.42382166258511	5.47088665243825	5.47015980597075	0.206315685162997	0.53230590357574	0.851971173271146
Merged-chr6-125313920-4	chr6	125313411	125314411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010736)	promoter-TSS (NM_010736)	-26.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	8.11079272620528	8.20441182079528	8.11995872050492	8.14807283337406	8.06731957190511	7.84160228122512	-0.164224617422918	0.450224064656203	0.808229465856472
Merged-chr15-103308543-2	chr15	103308043	103309043	+	617.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	1895.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	2.39368545485004	2.39680554533919	2.49279801631529	2.58510108537248	2.41592453952013	2.69088813927056	0.832534802598032	0.29851499707959	1
Merged-chr18-35771444-4	chr18	35770943	35771943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019912)	promoter-TSS (NM_019912)	-116.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	7.83884292233248	7.56798310932992	7.48428880986333	8.06645783512098	7.77295992861638	7.7328003525309	0.32376202620177	0.185714643573401	0.569987977664253
Merged-chr10-81626718-2	chr10	81626218	81627218	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181586, intron 1 of 7)	L2a|LINE|L2	604.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	5.44049273418948	5.13223478764103	5.14715623598518	5.5980721840288	5.56728394781222	5.14078016211988	0.415191285229127	0.262135191461711	0.660009964678367
Merged-chr4-141137990-4	chr4	141137494	141138494	+	950.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1802.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	6.67190332502875	6.78054385797744	6.76392869266019	6.7218504306153	6.98775170101734	6.8224828990261	0.179933603435327	0.480237505902338	0.824537487093219
Merged-chr6-18848550-4	chr6	18848030	18849030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133939)	promoter-TSS (NM_133939)	-105.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	7.81374358646424	7.79656837423113	7.45378805046602	7.77799933594087	8.0839431791159	7.41027485712368	0.134017897517712	0.624650017471292	0.892121293039105
Merged-chr9-73044875-4	chr9	73044371	73045371	+	948.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	61.0	NM_001301230	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	3.61656721522183	3.77987057261598	3.63162635359161	3.44676592128781	3.35462004038321	3.42735608039957	-1.0026395477481	0.0811298478646809	0.376836685336852
Merged-chr10-91180324-6	chr10	91179913	91180913	+	834.3555299999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8794.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	4.97106123980519	5.17801636038086	5.27199975190722	5.54202841594719	5.56760709961631	5.77294982075363	0.952463941333913	0.00602816839553573	0.0700058389191538
Merged-chr1-177796111-4	chr1	177795604	177796604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	CpG	405.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	7.08577542297453	7.50340383680542	7.07595777408944	7.44283354693448	7.29947896753271	7.09380802248858	0.0685268126208578	0.79715916133574	0.951678829711438
Merged-chr13-24634537-3	chr13	24634040	24635040	+	736.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	-4108.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	2.22283284209369	2.37220892861645	2.39650486855172	2.23092736875036	2.09232520505654	2.14119354524615	-1.27595942688726	0.154438104922461	1
Merged-chr16-93613830-3	chr16	93613328	93614328	+	915.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5991.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	3.22603224178134	3.10033428187152	3.32512496146904	4.44589209203757	4.24779341879618	3.88144191695717	3.97462430334746	3.12497185189622e-08	2.54674493489305e-06
Merged-chr11-83292299-2	chr11	83291799	83292799	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028363, intron 2 of 2)	intron (NR_028363, intron 2 of 2)	600.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	5.03396793137214	5.42439274002755	4.90296823690003	5.18826300120154	5.45133952516969	5.04738431387586	0.200389409092785	0.614413989283825	0.887435546271868
Merged-chr19-7204602-2	chr19	7204102	7205102	+	810.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_134150, intron 1 of 6)	intron (NM_134150, intron 1 of 6)	1682.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	3.52120642056941	3.51049866203143	3.48175342488937	3.37323567973382	3.69212354786182	3.75779058753082	0.399289297165638	0.491687248780562	0.830651911890936
Merged-chr3-22126568-4	chr3	22126055	22127055	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	49903.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.47111210523789	3.51332667876047	3.71770380845256	3.5514606081458	3.31534408327621	3.58502235553708	-0.30289164609976	0.604626899558329	0.88314896167691
Merged-chr9-103365906-4	chr9	103365378	103366378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	-98.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	7.41633250898226	7.21201502780715	7.02336187190127	7.40118665122819	7.10710617821089	7.13458077647873	-0.0191251630735157	0.940650785397673	0.986881313555047
Merged-chr2-104105436-3	chr2	104104942	104105942	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	9641.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	2.75089226398105	2.87791387333924	3.16399099065619	2.90664568299922	2.97346848342308	3.01093890432157	0.133553480234856	0.850301918570581	0.964858782843783
Merged-chr6-17688931-4	chr6	17688402	17689402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5092.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.08638484039752	4.07425669910242	4.01912251638356	4.21012853903521	4.10693140339386	4.36053237470873	0.450230158768087	0.343351303558932	0.732252800556993
Merged-chr7-127759945-4	chr7	127759459	127760459	+	872.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9856.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	4.28184724793447	4.41713584835328	4.63852518399388	4.32844202883274	4.30802213220706	4.59082242099862	-0.100026184960458	0.82504915597156	0.958678376748211
Merged-chr16-38088924-4	chr16	38088462	38089462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019827)	promoter-TSS (NM_019827)	-39.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	7.91043348114992	8.10809223658528	7.93828164151205	7.94329039555146	8.16535520389339	7.92416082417261	0.0425845137927604	0.847834148528647	0.964318271116593
Merged-chr14-26640683-6	chr14	26640203	26641203	+	780.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	2569.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	5.20484333324886	5.0541209974089	5.07337025688832	5.34495921020899	5.29542563872179	5.27260101411666	0.388410505161195	0.267292442366401	0.664581053738824
Merged-chr9-20459922-4	chr9	20459388	20460388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011753, intron 1 of 9)	CpG	272.0	NM_011753	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	6.45303161242511	6.80108086868419	6.57075573934599	6.76801201983521	6.54694805881256	6.37072955954163	-0.0683745381313125	0.809590607961112	0.954749848816598
Merged-chr3-88138401-4	chr3	88137904	88138904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3968.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	8.57951668903977	8.69303634606246	8.37701316368035	8.45878063995129	8.74366895844242	8.06089761912321	-0.13764777262624	0.592937146332599	0.878353463985097
Merged-chr2-128750624-2	chr2	128750114	128751114	+	901.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	intron (NM_008587, intron 5 of 18)	51699.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.1291297443387	7.04408634887027	7.07480419743626	7.10227692948958	7.47653888291018	7.21977148545296	0.299537414940186	0.227602351717221	0.622807698029682
Merged-chr5-43844755-2	chr5	43844255	43845255	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-24054.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.85604093190735	4.67283806401736	4.88696850987698	4.52708507219534	4.50565827564502	5.14404241750088	-0.13342153909028	0.764841105564295	0.942093382415686
Merged-chr13-113546588-2	chr13	113546088	113547088	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-43744.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.13174427371144	3.32475828373542	3.3071330609579	3.19598495726562	3.46538656813436	3.14400006429527	0.114955348840474	0.858382118336225	0.966904375347177
Merged-chr13-88459965-3	chr13	88459460	88460460	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-361512.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	5.37009636361973	5.40888633462976	5.59759477954864	5.72257526303796	5.82867395122758	6.04012175429631	0.757176744410779	0.0193840932866294	0.15815960327455
Merged-chr8-85502637-4	chr8	85502132	85503132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10015.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.77498980782403	5.87496893759709	5.57972434966539	5.99079844406869	5.83260772392334	5.72790082814331	0.178826675173507	0.570446114527542	0.869196267207969
Merged-chr9-108809929-4	chr9	108809433	108810433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030729, intron 1 of 12)	intron (NM_030729, intron 1 of 12)	1553.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	5.41278601561602	4.88971696110506	5.44096502970535	5.164874688617	5.30043414864713	5.60948971300926	0.195044481651366	0.619693095086114	0.889868376148509
Merged-chr2-154220130-4	chr2	154219623	154220623	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 15 of 15)	intron (NM_001012392, intron 15 of 15)	-3619.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	3.10399453034375	3.22712613752866	3.121591531811	3.1133505458947	3.08785472854341	2.94929725947861	-0.434069894573474	0.510484593832186	0.840900403531537
Merged-chr13-12423345-3	chr13	12422858	12423858	+	655.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 28 of 44)	RMER1B|Other|Other	27983.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	2.74628339876339	2.85915298821408	2.91437829817199	2.82651056381079	2.68971831791012	3.04376940444135	0.0743244092832921	0.918188348587129	0.981747877135909
Merged-chr13-56183766-4	chr13	56183310	56184310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4925.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	7.33671880636742	7.24100511265172	6.88841275998759	6.80490200385968	7.28111829501492	6.9320726539307	-0.220144721406025	0.433536392453715	0.797815674529737
Merged-chr1-64533622-4	chr1	64533128	64534128	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	CpG	824.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	7.47354788338134	7.7218363899864	7.53073149624343	7.78674359583011	7.83345941570205	8.06328169168179	0.451494162442586	0.0515584557923005	0.28955909820201
Merged-chr4-149781212-4	chr4	149780692	149781692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6925.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.64602433874059	7.51408841252101	7.3348723902229	7.59092296570382	7.92003960189946	7.4034993139557	0.227466557828099	0.377596176394937	0.759978294360939
Merged-chr10-80054699-4	chr10	80054201	80055201	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008162, exon 3 of 7)	exon (NM_008162, exon 3 of 7)	682.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	7.22994722720993	7.16759517207185	7.17152705589179	7.47200661804533	7.49192445741314	7.28907195128923	0.349575247886027	0.130021963489064	0.482195010397444
Merged-chr17-45556795-6	chr17	45556299	45557299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1099.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	8.01159813318306	7.60852724386505	7.90088533570232	7.98125197454334	8.07659912544752	7.98756373387695	0.237969580878863	0.303194460521087	0.699862332768671
Merged-chr12-69682065-7	chr12	69681524	69682524	+	988.3253779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135559)	promoter-TSS (NM_001135559)	-172.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	7.02139004642732	7.2031466187205	6.99852966066837	7.03959077174205	6.92966031044501	7.0296457557288	-0.128323469061419	0.597011395618255	0.88011264230803
Merged-chr13-92576899-4	chr13	92576356	92577356	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030237)	promoter-TSS (NM_030237)	-624.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	2.20571097451448	2.66038508987473	2.39731016810478	2.46537185742683	2.44532979495354	2.60077789951563	0.389034218784643	0.657706233881602	1
Merged-chr10-43478077-4	chr10	43477576	43478576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	5.96129594876064	5.89365107818886	5.58940254120811	5.69037803078956	5.66303559920716	5.40485631754876	-0.425293955069302	0.197907407708374	0.586043439320662
Merged-chr8-72295220-4	chr8	72294723	72295723	+	987.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-23839.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.72728635827287	7.56646239308821	7.38115408959099	7.20017049843845	7.45512090189127	7.33813853500459	-0.342586727871695	0.157415250421791	0.528707845204503
Merged-chr3-136688168-4	chr3	136687671	136688671	+	854.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	18105.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.45878436267078	4.48403722996017	4.01900292072676	4.11586821248079	4.08936974849348	3.68753674919718	-0.997406495321121	0.0677490763371419	0.34057909279005
Merged-chr14-31427042-2	chr14	31426542	31427542	+	612.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	ID_B1|SINE|B4	9058.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.64415219827715	4.64241390270024	4.85498262326357	4.67910902012816	4.69372702042441	5.11654991119731	0.28248408963293	0.498927624503161	0.834165925487441
Merged-chr4-144894414-5	chr4	144893912	144894912	+	872.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	1275.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.16594727488042	6.53246367317257	6.1738286772835	6.37521170157035	6.21968859789246	6.14690730031562	-0.0948430390247676	0.748038017694424	0.936880860325556
Merged-chr6-125231761-4	chr6	125231257	125232257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286753)	TTS (NM_001286753)	103.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	7.7598124492632	8.03692538395357	7.78771003857518	7.72800448366782	8.05668352673491	7.41221873444028	-0.142471628889938	0.591469851255791	0.877648608732646
Merged-chr19-21274326-4	chr19	21273797	21274797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2019.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	8.4206606714377	8.43188599774266	7.69524619304859	7.88300804205157	8.16292242416125	7.92758240592372	-0.330497515868823	0.233923875827414	0.630158568371129
Merged-chr6-83120996-2	chr6	83120496	83121496	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023547)	TTS (NM_023547)	465.0	NM_001083923	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	5.34220787703169	5.10416519696255	5.53372985771719	5.52034581030059	5.36447296924989	5.3963822036489	0.19765657681855	0.574913689891601	0.87094931637326
Merged-chr3-8993665-6	chr3	8993161	8994161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	10543.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.45324613119544	7.51578399832912	7.02959437078181	7.06434557978041	6.86176091301572	6.59208758406579	-0.750473257854252	0.0074467078458895	0.0817220193315231
Merged-chr3-132116320-4	chr3	132115804	132116804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	31012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.76246345896505	5.93800851102765	5.93762816729597	5.78924218999947	5.86784994506592	5.7788179996489	-0.112743378273511	0.709274713505039	0.923935912726646
Merged-chr7-90032964-2	chr7	90032464	90033464	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	3805.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.67208098111553	7.23954555072276	6.79662622984265	7.02434106391034	7.25237825139476	7.25351468613009	0.373142015200441	0.185546148424259	0.569744037127675
Merged-chr14-75010563-3	chr14	75010052	75011052	+	900.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-5475.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.60416595215925	5.92112267777389	5.6293596310196	5.34452589250241	5.77149824864956	5.7446475849756	-0.174928768142513	0.61083719490344	0.885849400663435
Merged-chr6-120481034-2	chr6	120480534	120481534	+	787.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 13 of 13)	exon (NM_008359, exon 13 of 13)	12773.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	3.29401977409315	3.15827220772989	3.12306525955174	3.02975054144553	2.99329765757802	3.01436791631989	-0.827525932487398	0.208192856473436	0.599041414336639
Merged-chr4-145195028-4	chr4	145194548	145195548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276465)	promoter-TSS (NM_001276465)	-43.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	6.57800532962457	6.80605743719941	6.51716721893707	6.81851202102953	6.8654142872584	6.15961077167824	0.0349150416268524	0.91125063483924	0.98004232415071
Merged-chr16-52056343-4	chr16	52055843	52056843	+	916.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	24794.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	5.80616401004594	5.98960411227664	5.44918286883931	5.73292714080172	5.76981429242802	5.57521144581841	-0.145416388293267	0.666073318008099	0.907966267164068
Merged-chr14-40924940-3	chr14	40924441	40925441	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	MER58A|DNA|hAT-Charlie	23268.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.14903197237915	5.43171588207025	5.3399508223315	5.17578921000189	5.22589662859754	5.34242060274532	-0.134461321865545	0.702604711970637	0.921915237544592
Merged-chr2-164938911-4	chr2	164938417	164939417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9302.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	2.97671395115908	2.53093817522548	2.6600734998301	3.18672203884036	2.77785714816325	2.99428216049871	1.247266804476	0.123376038741115	0.470042341067999
Merged-chr18-53770313-4	chr18	53769827	53770827	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25780.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	4.45002194117611	4.76492210078641	4.54091221755965	4.4588813554699	4.68148109982065	4.97721907242554	0.281278469006402	0.523823214154994	0.848428438699863
Merged-chr2-91956114-4	chr2	91955616	91956616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-5768.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.04628092464226	4.66325365201698	5.02984525553645	4.69285579878232	5.04549371858632	5.22061898018084	0.17248597818556	0.678306077033355	0.913379457468915
Merged-chr11-74649351-4	chr11	74648854	74649854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081158)	promoter-TSS (NM_001081158)	-141.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	8.17789720015556	7.9879493727613	7.82943274026812	7.86978185565854	7.98866203788463	7.71060359368947	-0.206351194963516	0.373706009154072	0.757546812967132
Merged-chr2-45276913-4	chr2	45276426	45277426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159484.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.60219729043036	7.52900641075505	7.40129905907417	7.35488376924038	7.57568526172128	7.37081812039726	-0.108863550947334	0.639928100014304	0.898255496259518
Merged-chr7-43604692-4	chr7	43604170	43605170	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-2499.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	2.45849062316147	2.38724290013416	2.57171334522949	2.39999932003635	2.31478165979246	2.52139335010343	-0.382622935290977	0.637204061590643	1
Merged-chr16-92698778-4	chr16	92698274	92699274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	CpG	-1445.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.90020537702159	6.18125963493423	5.66309176242019	5.80967058275135	5.99738170284098	6.26103970373713	0.147694446681965	0.657124084575333	0.904749338441592
Merged-chr13-49421634-1	chr13	49421134	49422134	+	611.0	f0_balb.idr	promoter-TSS (NM_001276399)	promoter-TSS (NM_001276399)	20.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	5.23872816460312	5.07568292330988	5.30305850887997	4.91193540978022	4.73797383739524	4.74159312250562	-0.874556275033264	0.0212702723120639	0.16817339590861
Merged-chr8-86884747-3	chr8	86884244	86885244	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	CpG	514.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	7.29318545817457	6.97566378821644	7.08353338758149	7.03497683525222	6.6374508962746	7.11634440650543	-0.286771054444071	0.296005734359976	0.692779918635739
Merged-chr17-45433096-1	chr17	45432596	45433596	+	1000.0	f1_balb.idr	promoter-TSS (NR_130960)	promoter-TSS (NR_130960)	611.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	7.95584228811222	8.18140462283102	7.75225414112883	7.78945175636852	7.86503380226572	7.51904618077066	-0.345287656003404	0.159278635520527	0.531341727313955
Merged-chr7-19268633-2	chr7	19268133	19269133	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	3221.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	5.55581477110368	5.59716497527299	5.86708028021892	5.87568077496859	5.89075877530854	5.9739451485696	0.436923239946498	0.160315941850708	0.532965919658045
Merged-chr12-42187249-3	chr12	42186738	42187738	+	902.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B|LINE|L1	-701181.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	3.67550162114017	3.58169407301162	3.76653240348672	3.30126880469006	3.47787607484819	3.73801326364124	-0.572376902315555	0.328862540863672	0.721038398138001
Merged-chr16-89871664-4	chr16	89871143	89872143	+	968.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-53291.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	7.1312618563176	7.2856710143884	7.20560255991896	7.35725168600732	7.19547030103797	7.00445460312687	-0.0155347222804912	0.949416532713818	0.988195309248553
Merged-chr6-125071887-4	chr6	125071383	125072383	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	606.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	6.48364634079302	6.69203471495612	6.6188147925713	6.46243133003234	6.35845585083736	6.16251623161001	-0.421117001272395	0.125476240241677	0.474078843870859
Merged-chr10-80596285-4	chr10	80595770	80596770	+	764.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5929.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	5.1580838409681	5.06852032510651	5.6706228584886	5.40327553956365	5.43226463622593	5.91313566587182	0.540925888520243	0.167714591029706	0.543765418110963
Merged-chr17-50123983-3	chr17	50123426	50124426	+	909.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	Charlie1|DNA|hAT-Charlie	66571.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.72399050611042	3.93920038790953	3.79157233405168	3.50979397908882	3.36842258374733	3.43403681996352	-1.42219465267616	0.0131966531471854	0.121980350485559
Merged-chr2-167294462-2	chr2	167293962	167294962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53925.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	3.21565072232993	3.0517836450363	3.20660787090885	3.09967851415565	3.20104256345771	3.04265639382589	-0.161340062147955	0.803975656917012	0.953557286986578
Merged-chr5-120504384-2	chr5	120503945	120504945	+	627.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-822.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	2.6026595511416	2.40243153957732	2.62072509923289	2.44922314276863	2.42119634682888	2.50638446651052	-0.519448544337703	0.515026361976267	1
Merged-chr3-79843483-3	chr3	79843007	79844007	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-845.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	6.00743066504554	6.22596276250878	6.28535156216454	6.36110823991156	6.32510198693938	6.54256913936097	0.38712760305196	0.171853352772625	0.550279911394774
Merged-chr19-5428164-2	chr19	5427664	5428664	+	822.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001256515)	TTS (NM_001256515)	3020.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	3.31376317891334	3.14655424149813	3.25541429522346	3.24131422083371	3.20868472475218	3.43503677950292	0.218058362585855	0.726017596628025	0.929743505822386
Merged-chr4-139252607-4	chr4	139252112	139253112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58096.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	6.81975396546322	6.85623378187918	7.00091949889451	6.91268690133705	7.16662785183012	6.86286867384485	0.164276812900669	0.519138297615679	0.845629761325035
Merged-chr15-64047804-4	chr15	64047301	64048301	+	816.979126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	MTEa|LTR|ERVL-MaLR	11963.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.33384959525724	5.34065961220607	5.51732728345698	5.68656893059962	5.29316672386729	5.52368074646656	0.216329686257929	0.532084548590099	0.851941408541505
Merged-chr4-66816679-4	chr4	66816117	66817117	+	908.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-10934.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.03730004932481	5.06349681439051	5.29223962188308	4.93117272515091	5.00782184829331	5.17082890174414	-0.195875058495228	0.597379701746311	0.880373726631028
Merged-chr7-143685874-4	chr7	143685373	143686373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	2.0	NM_001308111	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	6.38916078352552	6.51202810759472	6.5838172043481	6.23715436065259	6.41360156530162	6.59366165892793	-0.12399933277666	0.653822552293737	0.903558174250044
Merged-chr6-134247509-4	chr6	134247003	134248003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-148826.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.33080077356464	5.374254269523	4.97122903612518	5.72974455871321	5.70356058095461	5.54893389632426	0.7938538446133	0.0239365729873474	0.181891722843032
Merged-chr6-37442961-2	chr6	37442461	37443461	+	927.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-813.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.80770830032415	7.09515480457601	6.68591474340725	7.00711774904109	7.19411188541317	6.7282563941869	0.181274249554167	0.517296291038633	0.844527792582824
Merged-chr13-37820659-2	chr13	37820159	37821159	+	609.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5379.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.74053242508629	2.75606585291045	2.83254811886483	2.70437510938064	2.75090595323716	2.72131712985076	-0.253778560607033	0.725193583226302	1
Merged-chr6-119360482-4	chr6	119359963	119360963	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355692, intron 4 of 7)	intron (NM_001355692, intron 4 of 7)	28271.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.87685572361421	6.24526356149176	6.24510806706674	6.20620546742771	6.21008412133567	6.67900219308239	0.406724154095146	0.199402491458427	0.587811571148104
Merged-chr2-60215363-2	chr2	60214863	60215863	+	612.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	5427.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	3.63103796370841	3.38411721308041	3.51395185618797	3.72609455880062	3.2634588005012	3.6384933448411	0.142098715871928	0.815537959315564	0.956406058187625
Merged-chr4-135856569-4	chr4	135856083	135857083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080387, intron 1 of 5)	CpG	512.0	NM_010178	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	6.73881621863191	6.35697790906308	6.48531577540711	6.68013251947819	6.33306536939055	6.67933468186189	0.044109210387893	0.878989439728215	0.972074795996392
Merged-chr10-80319696-2	chr10	80319196	80320196	+	629.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025521, intron 1 of 1)	ID_B1|SINE|B4	852.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	3.72847584135048	4.07534617550892	4.27013096086423	4.01926975787277	4.06496732820598	4.11889488763356	0.0900252376006271	0.861883496104294	0.967996224966109
Merged-chr5-123684684-7	chr5	123684424	123685424	+	831.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291229)	promoter-TSS (NM_001291229)	-563.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	6.64850634671839	7.03821401310125	6.60669484170768	6.47730870429809	6.45086806167918	6.3298996445812	-0.57771125241743	0.0401228019825049	0.249382595088108
Merged-chr3-87350508-3	chr3	87350030	87351030	+	839.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7351.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.97457668059291	7.02704518996734	7.0717675920124	7.24048513712539	7.49017047727655	7.19254767330105	0.449646537973688	0.0640610604604815	0.329853818983591
Merged-chr11-98815989-2	chr11	98815489	98816489	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	B1_Mus1|SINE|Alu	-5900.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	5.0228811525577	4.85255314494336	5.3409530884741	5.40956016781357	5.28381329848166	5.43251402721949	0.610091927529264	0.0999045300172577	0.421550908978775
Merged-chr17-84141087-4	chr17	84140668	84141668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46779.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.03692072882118	5.69302109173582	6.26727363323777	5.35303671514122	5.06534035477664	5.20201807184521	-1.50776870728916	2.56997683082467e-05	0.00090496247202395
Merged-chr7-126481901-2	chr7	126481401	126482401	+	972.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5454.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	4.9544725814698	5.27761995247884	4.86999967184403	4.93825454921232	5.13743344893365	5.11748344546976	0.0242603550867027	0.949942238729177	0.988343779933447
Merged-chr5-115236028-4	chr5	115235535	115236535	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026398, intron 1 of 5)	intron (NM_026398, intron 1 of 5)	184.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	4.84209530131221	4.89305623089798	4.85268890477467	4.43081577047001	4.28550903926963	4.61350879290727	-1.02934790938204	0.0137447175212025	0.125237675810799
Merged-chr1-183094954-4	chr1	183094450	183095450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278218, intron 8 of 8)	intron (NM_001278218, intron 8 of 8)	52607.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	4.87396499478807	4.95923327812853	4.8557933627329	4.88947026561063	5.29310320282532	4.88344450728167	0.327415232404738	0.407448974060819	0.781604711789613
Merged-chr1-132333800-4	chr1	132333289	132334289	+	810.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028778)	TTS (NM_028778)	17664.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	5.52714781713064	5.46353310502216	6.14524381378848	5.79979849880505	5.62570751959241	6.00370188848087	0.135182920923785	0.712023803022989	0.924891945289204
Merged-chr10-115311455-4	chr10	115310939	115311939	+	951.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	4152.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	3.74430958298965	3.90084344982676	4.01523703228948	3.74969487105703	3.57391367305395	3.84734108577173	-0.540034114060665	0.314904238161204	0.709269735779917
Merged-chr11-115172921-4	chr11	115172427	115173427	+	786.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	9586.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	4.76746535994039	4.70840095746751	4.13965918001343	4.60859034389923	4.55784095162551	4.04469303493001	-0.344102976461311	0.511543646330464	0.841445561408822
Merged-chr6-65138421-2	chr6	65137921	65138921	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	6309.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.44914274083682	6.94184798928283	6.48781206550983	6.80570298454458	6.8124305023597	6.6191058601455	0.153081514174795	0.594498308727086	0.879092655349042
Merged-chr18-53238574-4	chr18	53238062	53239062	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7100.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	4.73212964878444	4.74440596626869	4.67560261322629	4.50183004457889	4.66409992081849	4.66200212818866	-0.255796845984441	0.528805015870454	0.850585575598857
Merged-chr18-88823989-4	chr18	88823495	88824495	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70212.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.8547544637236	4.89866246718292	4.77747045200377	4.62120529672042	4.75883467335065	4.68517098562627	-0.357595448380493	0.365477998005517	0.750624883533713
Merged-chr4-132571378-3	chr4	132570863	132571863	+	584.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7296.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	5.77090463424737	5.84515994623172	5.62767232209952	5.12051110327098	5.45821454986283	4.91584517845883	-1.05136426450728	0.00482115114832327	0.0597228442384521
Merged-chr7-25432936-2	chr7	25432436	25433436	+	629.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-20050.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	4.01790878956596	4.01127181972042	4.46866847818588	3.99225994470887	4.01551486293285	4.16496655381129	-0.331837436156098	0.5108625973736	0.841173368469991
Merged-chr7-143095741-4	chr7	143095238	143096238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	3.9016515712374	3.59399432742494	3.81310384182073	4.00677752687451	4.04161766351473	4.21291936928568	0.955139545735448	0.0669583661579854	0.338177343324652
Merged-chr15-103339155-2	chr15	103338655	103339655	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	931.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	3.29369887989957	2.95289593753886	3.13952597859727	3.36940577508609	3.2133065385995	3.69146165589986	1.18810796896601	0.077494160185863	0.367289478283509
Merged-chr2-27758544-4	chr2	27758072	27759072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 9 of 9)	intron (NM_001290481, intron 9 of 9)	47989.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.59063536324569	6.41429588956069	6.27611210274679	6.41195039767079	6.29161369301989	6.18792313787858	-0.223947046646811	0.424564407096163	0.792697196836987
Merged-chr11-59230477-4	chr11	59229962	59230962	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	5.34707341605195	5.10432632706033	5.43130682850254	5.4071303005518	5.44533822573282	5.95747799881333	0.617864200843739	0.0952394805475721	0.411228073744418
Merged-chr5-109796389-4	chr5	109795884	109796884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37758.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	4.73243520962278	5.15739862542946	5.10497565986006	5.14901848798311	5.31199946132341	5.38652224108987	0.56678316331372	0.136764381705011	0.494047524221177
Merged-chr9-118808590-1	chr9	118808090	118809090	+	580.0	f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96898.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.08405599507913	4.07403761319103	4.40267038601597	4.32279218949584	3.84858244211542	4.34631561971172	-0.0106463876323881	0.983457848386087	0.99633715643266
Merged-chr11-63133753-2	chr11	63133253	63134253	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 2 of 4)	intron (NM_001302255, intron 2 of 4)	950.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	3.62491903048859	3.61540392304167	3.68280254100469	3.74808691125075	3.78801935954551	4.04176033562805	0.723566463716538	0.17817063822659	0.559276830911593
Merged-chr15-81103870-4	chr15	81103366	81104366	+	980.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1181.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.69821688681808	7.7479826473578	7.34948936683421	7.50857865890359	7.52740731516237	7.23976353542685	-0.262693793931539	0.291903617466609	0.689235268138963
Merged-chr8-33930763-5	chr8	33930318	33931318	+	989.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-955.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	5.4021949166776	5.2309795009243	5.37216420324365	6.27504616078996	6.0437058701628	5.91102497377343	1.37862775185124	1.89910862667443e-05	0.000698281178118983
Merged-chr11-103379981-1	chr11	103379481	103380481	+	1000.0	f1_balb.idr	intron (NM_183034, intron 6 of 11)	intron (NM_183034, intron 6 of 11)	-16289.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.81212489462182	3.91319280135613	4.47475845647928	3.77149082474326	3.660374615259	4.10459449302033	-0.714540466444442	0.211483872121781	0.603945120913907
Merged-chr8-72169402-4	chr8	72168883	72169883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 2 of 7)	PB1D10|SINE|Alu	8183.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	6.37740753997243	6.27562680519318	6.2909750309241	6.63238911261414	6.66210178328438	6.42960345463479	0.436843094934191	0.103297417175382	0.428430440052298
Merged-chr15-58019775-4	chr15	58019282	58020282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14512.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	7.18048487651582	7.05039564586788	7.03182603326655	7.18268044323557	7.42652664169653	7.11617155623458	0.248464513628316	0.312248967552109	0.707056878336701
Merged-chr16-31194068-1	chr16	31193568	31194568	+	553.0	f0_balb.idr	intron (NM_030138, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	7170.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	4.57382533321077	4.8902682313256	4.23885731103801	4.6502228100684	4.48272347694377	4.40777031316623	-0.214116461317653	0.647571578121799	0.901492962680207
Merged-chr5-124021914-4	chr5	124021423	124022423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	RSINE1|SINE|B4	10337.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.78894822132585	7.66662039998822	7.42210716015474	7.83761325384072	8.09193078565177	7.3525276254043	0.240946416399627	0.38919251167681	0.769015431167891
Merged-chr5-110178036-1	chr5	110177536	110178536	+	555.0	f0_balb.idr	intron (NM_001347389, intron 1 of 23)	intron (NM_001347389, intron 1 of 23)	1179.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	5.02858085712723	4.97713138929535	5.12886191689536	5.73953983841756	5.68857866015246	5.29683932191878	1.10939394929933	0.00184441401851565	0.0290113424674197
Merged-chr1-166345775-4	chr1	166345259	166346259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33408.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	6.09913598901338	6.35895858793649	6.10738798263157	6.16865331839074	6.24933257187334	6.3125233682637	0.0707113844375237	0.80447621205168	0.953651704501661
Merged-chr3-97658209-4	chr3	97657707	97658707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182997)	promoter-TSS (NM_182997)	-5.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	6.73719167093675	6.73031170421719	6.94911005152791	6.70379273387859	6.32924769707614	6.51889717517261	-0.445644855293246	0.102776859953552	0.427485976656595
Merged-chr18-61089683-2	chr18	61089183	61090183	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15889.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	2.93880986596015	2.74090862983063	2.8238834546698	2.85801349675713	2.99147495808185	2.95813379270132	0.491306648790848	0.484850752647575	0.827172930129731
Merged-chr12-83950663-4	chr12	83950169	83951169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	61.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	6.70097751060915	6.79079064227937	6.75145198552231	6.80500581099296	6.85815605229408	6.64847847099152	0.0503632837109852	0.841627472453917	0.962988975342446
Merged-chr9-85326716-6	chr9	85326246	85327246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160378, exon 2 of 3)	exon (NM_001160378, exon 2 of 3)	378.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	8.05259828462223	8.35257596782007	7.94074250490138	8.19969122011126	8.22126639358172	8.30635940268849	0.152197366665439	0.503038462830322	0.83670140357385
Merged-chr7-81863889-2	chr7	81863389	81864389	+	943.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	1202.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	5.25486747945757	5.4186172669234	5.59121635739272	5.45944299398812	5.38182898630773	5.51732300991879	0.0570574336546148	0.866516283062644	0.969061555059292
Merged-chr12-84674021-3	chr12	84673463	84674463	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24844.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	5.47220153097303	5.34432022714461	5.53903693389053	6.38618907368768	6.65331527195276	6.0759036644147	1.6825144150325	1.76877832348363e-07	1.17647087722163e-05
Merged-chr2-91949009-2	chr2	91948509	91949509	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	1339.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.50124663970709	6.82055707569924	6.49259076009846	6.12748412041933	6.23969301200191	6.17832964862617	-0.711456315187005	0.011543840960562	0.111276635617057
Merged-chr19-4059391-4	chr19	4058837	4059837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001362043, exon 1 of 6)	5' UTR (NM_001362043, exon 1 of 6)	110.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	5.26268160268027	5.17718251798513	5.93387517039533	4.92663557313453	4.71288110458667	5.41397311368595	-0.9078514695895	0.0415953825573646	0.255052954446072
Merged-chr6-96087167-3	chr6	96086669	96087669	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-25985.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	3.06502138816855	3.42001620236153	3.07996688931221	2.846500163833	2.97802965214583	2.90439766896939	-1.33264215022566	0.0608940410765283	0.319755622572778
Merged-chr11-74925869-4	chr11	74925381	74926381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013761)	promoter-TSS (NM_013761)	9.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.42115073435665	7.64737051373952	7.52405800297488	7.71047795200171	7.56803997185052	7.34647176021654	0.0297697233112804	0.900842842168866	0.977003338338462
Merged-chr3-8972975-1	chr3	8972475	8973475	+	631.0	f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	L1MC2|LINE|L1	-8829.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.81975081131813	3.62423133574813	3.92372790001284	3.88881192774639	3.61830333405708	3.94489134850742	0.0904948348397102	0.867873955277318	0.969472345488066
Merged-chr13-93778349-1	chr13	93777849	93778849	+	726.75	f0_balb.idr	intron (NM_009712, intron 1 of 7)	L1_Mus2|LINE|L1	6670.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	3.53101015304939	3.45891588480843	3.53350590202123	3.02574693114184	3.06943969301135	3.09497509458778	-1.91164278990006	0.00350591245503101	0.0472191588796083
Merged-chr8-34108507-4	chr8	34107994	34108994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	218.0	NM_001293759	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	6.37343210282368	6.62791282007086	6.51860204347254	6.44198800910097	6.57716971752854	6.45214810412605	-0.0247344482130552	0.926735114351034	0.983568563710725
Merged-chr14-66848878-4	chr14	66848384	66849384	+	986.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	19716.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	2.83943138977658	2.85808799136596	2.91403726196373	2.88512234745572	2.97415482301106	3.04455034079419	0.480546197815762	0.482696635219439	0.825756592327344
Merged-chr2-152696951-4	chr2	152696451	152697451	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 10 of 11)	intron (NM_010376, intron 10 of 11)	9803.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.83469952443952	3.78997747335379	3.79523603616356	3.9220728910658	4.0062221019145	4.06036232458387	0.587013536236006	0.244333535905295	0.641614718441551
Merged-chr7-81196828-4	chr7	81196317	81197317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16987.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.21972102474711	4.3845323888983	4.06709043737291	4.35879897840619	4.39398009563794	4.28351785183074	0.292926912669409	0.526879028743631	0.849688933709978
Merged-chr13-37964245-3	chr13	37963748	37964748	+	802.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29960.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	6.51037302459927	6.1388908613197	6.56983823944212	6.3796078717604	6.13608010508955	6.11948096604531	-0.32544627476352	0.277685464539203	0.674855968126621
Merged-chr4-138041743-4	chr4	138041238	138042238	+	987.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	43913.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.44084460682589	6.37309952986692	6.37794624723865	6.63776526072286	6.81339140419648	6.41855962832161	0.396040360888777	0.147840045196772	0.513107343244259
Merged-chr7-132765795-3	chr7	132765308	132766308	+	745.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11108.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.6906306108447	4.59137165602644	4.39460771454822	4.29094101504259	4.21559497376106	4.32677510151023	-0.768175401643142	0.0827093191782715	0.380436207266671
Merged-chr15-28026767-2	chr15	28026267	28027267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-919.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.75548559787892	3.87638390507698	3.85380249712143	3.6032385415795	3.32707369899495	3.82579024720905	-0.811685240714715	0.160391792519603	0.533003725067741
Merged-chr2-31760765-2	chr2	31760265	31761265	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	592.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	6.51032103840233	7.04731438009249	6.96318305030318	6.9446384516769	7.11579626086281	6.85096922654792	0.185088224180651	0.511573229793838	0.841459220847773
Merged-chr7-132982884-2	chr7	132982384	132983384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362198, exon 10 of 11)	exon (NM_001362198, exon 10 of 11)	32363.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	2.62052980608842	2.51331318198088	2.60674407224711	2.48202187238586	2.18080710462835	2.49084061342823	-1.21435402034244	0.164730627370467	1
Merged-chr15-102278991-2	chr15	102278491	102279491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	-465.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	5.26963879449462	5.14545537038848	4.93296313389345	5.2653405353374	5.17866143859456	4.75222064662227	-0.0735411347194071	0.852835118527164	0.965544656676077
Merged-chr8-122523365-3	chr8	122522856	122523856	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	27973.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	3.45554657715716	3.82663754198909	4.07708851864359	3.19216618032953	3.32608481835684	3.69338791477618	-1.37611325731623	0.0345110172212243	0.227643894327956
Merged-chr10-59590044-4	chr10	59589551	59590551	+	912.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	MLT1N2|LTR|ERVL-MaLR	26641.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	5.74908539260598	6.03008646231187	5.53227410090107	5.68406692613557	5.98085221320217	5.59608843226219	-0.0396677241610134	0.908077854334446	0.979108668058273
Merged-chr2-118389789-3	chr2	118389294	118390294	+	868.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	682.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	6.41437284589001	6.82538478058923	6.49883264223965	7.49232015415005	7.6674331414097	6.8553531126796	1.20933065105722	0.000114049180575526	0.00316749139430187
Merged-chr13-20232282-4	chr13	20231758	20232758	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	141751.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.63667650211596	3.57411243855368	3.99043260164105	3.83190814411168	3.66123466313695	3.92056829609869	0.217186663227924	0.695289087548794	0.919230570201314
Merged-chr4-133584368-4	chr4	133583866	133584866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133884)	promoter-TSS (NM_133884)	-7.0	NM_001290742	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	7.00796085084421	7.20583833284332	7.06120899503654	6.94233598155384	7.05551198530141	6.70657260552217	-0.268502377058962	0.293098646549472	0.690159101850425
Merged-chr7-143008741-3	chr7	143008250	143009250	+	913.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3091.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	5.31832530268282	5.40200866583626	5.42953606628663	4.76317010085392	4.74456186703322	4.83152151215655	-1.28997892317279	0.00043489306728381	0.00941133480950617
Merged-chr4-33289597-4	chr4	33289085	33290085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20726.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	6.73002651643785	6.87078595262863	6.6895474806362	6.86181681494153	7.03001242196811	6.87183879609812	0.245378167193615	0.328765720056823	0.720905796252831
Merged-chr16-37651783-1	chr16	37651283	37652283	+	612.5	f0_balb.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	2585.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	3.54141438179849	3.53872955774464	3.80820814750393	3.75650876528551	3.89955190190786	3.72565968998604	0.585077218408971	0.285182225225556	0.682783063721242
Merged-chr4-139161243-4	chr4	139160731	139161731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	19424.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	5.12485925302448	5.09689157430107	5.10240202447163	4.84480034517255	4.988168325902	4.95728547378483	-0.374757511223576	0.308275231478854	0.704348549093649
Merged-chr4-75315174-4	chr4	75314660	75315660	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26|LTR|ERVK	-36868.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	5.15265965362963	4.84035402605683	5.62736804139127	5.36261494330208	5.54752820238186	5.61304453914929	0.541379129003524	0.172769987857801	0.551432495192633
Merged-chr19-34595624-2	chr19	34595124	34596124	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101605, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3803.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	2.95402058050679	2.61528807382808	2.77354960081714	3.07788143570714	3.02851608261978	2.9743944292365	1.16391127308801	0.114582883969841	0.452032914562748
Merged-chr8-36149544-2	chr8	36149031	36150031	+	796.583374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-6479.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	2.60606960199902	2.87063894899321	2.84565089886827	2.38973760051047	2.35823019911063	2.67930977400981	-1.83204740833175	0.0320121887460318	0.217176534951473
Merged-chr4-133852791-1	chr4	133852291	133853291	+	765.0	f1_balb.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21940.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.12617733960347	2.98799857523626	3.13557839665508	2.88611000650993	2.76249746593739	2.97555197247629	-1.02319810709178	0.140976318423655	0.501640878883247
Merged-chr12-76959567-2	chr12	76959067	76960067	+	715.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	B1F|SINE|Alu	2681.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.52651550529788	4.65962910233766	4.72357295034417	5.07167847496148	4.99663500489477	5.2657590680558	1.05811382308159	0.00699653801094389	0.0781118925016261
Merged-chr5-122702994-4	chr5	122702512	122703512	+	756.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-4532.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.95960075644107	6.40192326527366	6.55957891263375	6.92321787569678	7.08801136876884	6.98958325790136	0.519943301045625	0.0670727393705709	0.338549499396206
Merged-chr6-34907351-4	chr6	34906868	34907868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3463.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	7.39158199300029	7.02401632653561	6.71414821059373	6.57414402761756	6.42337980125749	6.0879051159381	-1.08870056305382	0.000507650935854764	0.0106078902738833
Merged-chr5-140508193-2	chr5	140507693	140508693	+	791.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	RLTR17B_Mm|LTR|ERVK	2584.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	5.44295455424183	5.41084817858688	5.27948682893451	5.51126786294487	5.35312463391993	5.37528142903737	0.0563089668504724	0.867029245852195	0.969257436168173
Merged-chr16-44726057-4	chr16	44725532	44726532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	1731.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	5.37467396099408	5.86978565904675	5.699355540964	5.65702284585443	5.96285533176517	5.65345772601542	0.199337613843113	0.564113601521885	0.866201054824694
Merged-chr5-43872820-4	chr5	43872319	43873319	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MLT1H-int|LTR|ERVL-MaLR	4010.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.00402715897104	5.86852231068803	6.3903133397991	6.11452074708225	6.12947882763529	6.39683322960533	0.202258864869591	0.51965365897014	0.845955855762476
Merged-chr15-99017719-2	chr15	99017219	99018219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12172.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.62293393121331	3.53269968546671	3.61477867778252	3.70215802344057	3.4790561770348	3.57803430526756	-0.00888051745938593	0.987345724207871	0.997218304929226
Merged-chr11-116626937-1	chr11	116626437	116627437	+	555.0	f0_c57.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	82.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.4198234306821	6.02945325159208	6.33467772174968	6.4540523137032	6.44450819906325	5.9523938039041	0.0759945583378655	0.809406268584318	0.954737274196421
Merged-chr1-182282314-4	chr1	182281822	182282822	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	-127.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	8.09284927528785	7.93101684904253	7.81551094139169	7.830700805218	7.56819779957273	7.45349340502923	-0.465634259652448	0.0503393628145055	0.285484114681824
Merged-chr1-138517559-3	chr1	138517056	138518056	+	747.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 5 of 9)	intron (NM_021605, intron 5 of 9)	102201.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	4.69504942978157	4.74490801605046	4.87474343991802	4.68729820963727	4.59452342453044	4.55086998135304	-0.363485089478465	0.369408691035466	0.754116709983023
Merged-chr11-115513684-6	chr11	115513133	115514133	+	873.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	760.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	6.91188243741511	6.736194941188	7.05459564255249	7.24224451221363	7.15502801055449	7.18648980016708	0.447882106386013	0.0687004833896874	0.342942254787785
Merged-chr14-54902343-4	chr14	54901850	54902850	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	8207.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	5.22000333776118	4.91343544418686	5.03149358842944	4.9991810177614	5.16903991651499	5.09614454640271	0.0636515845706166	0.864611070670712	0.968297921776544
Merged-chr2-66192015-4	chr2	66191515	66192515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64602.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	6.86246144708526	7.20044271243098	6.55685704873337	6.43846967074169	6.97002166814476	6.05181944231273	-0.542112080810876	0.12976014041758	0.481840492853714
Merged-chr7-45741406-4	chr7	45740869	45741869	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360784, intron 1 of 5)	MTD|LTR|ERVL-MaLR	1109.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	3.99644968065467	3.9261054606056	4.28776424528899	5.6383710814765	6.10423064745839	5.69199796497605	4.3614634898759	8.98770448688016e-19	4.9200586509495e-16
Merged-chr16-24434207-4	chr16	24433707	24434707	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13884.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.9204123955782	5.82704905366763	5.60390773636213	5.33870955266635	5.36547259213603	5.3331024563401	-0.850212479316794	0.00952728913300747	0.0971633191350344
Merged-chr12-17774991-4	chr12	17774502	17775502	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	84193.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.39178562959346	4.28567790422303	4.57096426853914	4.9545594727171	4.58784243947585	4.96827554181363	1.02701152489393	0.0181254378228661	0.151596561377232
Merged-chr4-95160314-3	chr4	95159801	95160801	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108079.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.58898474289285	3.32753583876823	3.78581342347519	3.41134374084898	3.82123744662838	3.7573487897572	0.352111517871697	0.559805124349409	0.86512447604019
Merged-chr1-184732724-4	chr1	184732210	184733210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-217.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	7.55250135471914	7.73770932844758	7.63896809160575	7.41878972229084	7.59874340524865	7.83143920435947	-0.0336866647140249	0.887709863046315	0.973836995667151
Merged-chr18-36725623-4	chr18	36725109	36726109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009841, exon 2 of 2)	exon (NM_009841, exon 2 of 2)	1206.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	7.75618997882136	8.17295507738013	7.92382654872743	7.61787384958389	7.52766180490295	7.70972546190705	-0.500727470650579	0.0347627943064469	0.228623347190234
Merged-chr8-109458726-2	chr8	109458226	109459226	+	595.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35301.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	5.44105502032151	6.18260717707937	5.89522491052403	5.66297183147136	5.61459337267541	5.73434628541671	-0.380586688024345	0.286947739411029	0.684300670260737
Merged-chr19-6402179-4	chr19	6401699	6402699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 2 of 16)	intron (NM_011242, intron 2 of 16)	1616.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	5.53580322712961	5.98976241581375	6.18357431640655	5.97139982112278	6.30405489309741	6.09910209052609	0.369851689211579	0.271757925738217	0.669165290152271
Merged-chr2-124720442-1	chr2	124719942	124720942	+	660.0	f0_balb.idr	Intergenic	Intergenic	66861.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.39947394010734	2.52747050810613	2.49685015288987	2.49719387763052	2.44905884935985	2.63301614796053	0.294047078298789	0.709454776913074	1
Merged-chr9-83538365-4	chr9	83537877	83538877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-9961.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.47876017630526	6.07795799722386	6.03077883897143	5.37018802257981	5.40310943383534	5.72456597923742	-0.711042394965706	0.0492394060581041	0.282073149692443
Merged-chr10-20059076-4	chr10	20058593	20059593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-89827.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.5644609330375	6.763643396679	6.69853812816645	6.32606654259928	6.6190439469409	6.31130438988302	-0.383549118454909	0.164831450828057	0.539526193324456
Merged-chr2-128748554-3	chr2	128748014	128749014	+	926.492065	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	Charlie1|DNA|hAT-Charlie	49599.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.66504510193174	6.44409913486173	6.36901461477777	6.21859524295978	6.7610782275717	6.20018887039259	-0.106992323600215	0.732793662600505	0.931886950797983
Merged-chr9-78105331-2	chr9	78104831	78105831	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081490, intron 1 of 12)	intron (NM_001081490, intron 1 of 12)	3325.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	2.62405523758478	2.61472685160994	2.74660778569445	2.75232901952339	2.44659509421473	2.69720277113786	-0.140997126352988	0.855408831987157	1
Merged-chr1-157412060-2	chr1	157411560	157412560	+	995.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027984)	promoter-TSS (NR_027984)	-292.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	5.95919054258629	5.95874960170816	6.28732167029432	6.02961702455632	5.50100817836037	5.75748548812901	-0.515619545175246	0.123043816660259	0.469277622801796
Merged-chr1-65189816-3	chr1	65189290	65190290	+	686.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	3105.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	4.48082550585561	4.66074121880624	4.72398701312586	4.84116839389749	4.77173442195327	4.9698224900903	0.547527611445389	0.174767371664737	0.554295093299313
Merged-chr2-124637096-2	chr2	124636596	124637596	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-16485.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.97015338120393	4.18871627220794	4.59923578360213	4.07590170982626	4.28468052000397	4.69894919088113	0.265030399792572	0.613763413573533	0.887300906025089
Merged-chr4-53127783-4	chr4	53127308	53128308	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 4 of 49)	intron (NM_013454, intron 4 of 49)	32087.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.37973479905046	6.42593834394551	6.58895126293729	6.28072640614509	6.33451186990381	6.56610340452023	-0.114262912243329	0.678309870415054	0.913379457468915
Merged-chr5-105698389-1	chr5	105697889	105698889	+	596.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-1580.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.19419077064993	4.74868834377038	4.77065125707167	4.61327351892018	4.65685439387074	4.54474845360148	-0.729962731704416	0.0838864164932354	0.383307026005993
Merged-chr7-89982211-2	chr7	89981690	89982690	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1214.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	3.61520993483698	3.17495743911728	3.40031641084973	3.392038018211	3.03031941440659	3.2430702624822	-0.72683156260712	0.271785408428768	0.669165567962878
Merged-chr9-24499103-2	chr9	24498603	24499603	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359948, intron 1 of 22)	(CA)n|Simple_repeat|Simple_repeat	4037.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.64745929725509	3.65361494429691	3.86672532253907	3.53021397008068	3.42985701043679	3.84104330808877	-0.409235630059899	0.474436352814123	0.821442840837271
Merged-chr5-115507383-3	chr5	115506844	115507844	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	668.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.19667338694082	7.26621914556562	7.41856770474872	7.40445243311336	7.45345703529253	7.664857450042	0.318191134659534	0.177853391362802	0.55892688546374
Merged-chr11-118144706-2	chr11	118144206	118145206	+	772.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15487.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.19760032287375	4.26807150736807	4.23242014934008	4.23210204892489	4.01944704025185	4.11384460351928	-0.313149432450996	0.504028427970166	0.837420592739604
Merged-chr14-31496263-4	chr14	31495737	31496737	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028932, intron 1 of 5)	intron (NM_028932, intron 1 of 5)	1158.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	4.24839855571202	4.66417615910688	4.27304080658733	4.6212476497201	4.27575931685731	4.14442112835712	-0.128591819360079	0.79264510388759	0.950032655975256
Merged-chr9-85410892-2	chr9	85410414	85411414	+	594.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-83764.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.53501202684078	2.36358742564139	2.35582858318667	2.58343121543355	2.44439751222791	2.68837055437249	0.891193146068305	0.275713736466924	1
Merged-chr10-67098636-4	chr10	67098136	67099136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	4.89325786037239	4.31974766884314	4.04900581620249	4.47181676208665	4.45922114652705	4.32769028767343	-0.144685757520752	0.779175147574392	0.945710994231145
Merged-chr9-95574564-4	chr9	95574076	95575076	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14759.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.92190849838177	7.84909328349181	7.78562135693435	7.95247670834236	8.28338147569755	7.73563272452212	0.234978678932864	0.337684576978895	0.7275708402926
Merged-chr1-173743245-3	chr1	173742779	173743779	+	724.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1470.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.50044063735571	7.68507423585491	7.12787479362588	7.14817731670659	7.3267988373274	7.36530305530177	-0.27396427470982	0.294465471561373	0.691245357943879
Merged-chr11-58009837-4	chr11	58009357	58010357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	CpG	793.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	8.49050838339947	8.64230928803884	8.55630242332318	8.85929109055114	8.76983790337314	8.79820088722491	0.336941569636757	0.0875336670969926	0.392303208650574
Merged-chr12-85943863-2	chr12	85943363	85944363	+	633.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118913.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	5.86148151363919	6.0627867200628	6.25299794585805	5.59081531277632	5.6513296466457	5.38460788319951	-0.90445751796955	0.0056993124098052	0.0671426287689467
Merged-chr12-111459509-2	chr12	111459009	111460009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16848.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	2.48746892271352	2.41546495702846	2.62088535644171	2.55343351962808	2.40876981646332	2.92742510652683	0.759963195160695	0.354045209142882	0.741191409509408
Merged-chr4-155562937-4	chr4	155562442	155563442	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	561.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	8.03375467275958	8.14465995110448	7.84780770707819	7.99475287139355	8.21041204336648	8.15030497360738	0.145384421112031	0.51252897080214	0.842032105019173
Merged-chr10-100490962-3	chr10	100490468	100491468	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	2679.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	3.03462197756096	2.95722598932603	3.20632650996091	3.00732823480193	3.32182934626703	3.2773849198142	0.633148293420459	0.341327603141864	0.730816878642537
Merged-chr5-124116197-4	chr5	124115721	124116721	+	990.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025671)	TTS (NM_025671)	113.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	6.0470592562353	5.9106594197324	6.2641064325653	6.32258552510764	5.84492319061819	6.2661299345713	0.13575667361542	0.670309336936186	0.910029595108128
Merged-chr14-30713933-4	chr14	30713437	30714437	+	994.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019460)	promoter-TSS (NM_019460)	-912.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.26868274618862	4.40614614970912	4.12438370408487	4.33546957249853	4.48016208344745	4.14429871829742	0.154784941988353	0.742301070897469	0.935192080236037
Merged-chr9-114731154-4	chr9	114730680	114731680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-23.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	6.36304673889247	6.50913846554856	6.64174856692687	6.80366922261319	6.98381649484326	6.77937504466881	0.571045211594667	0.0295241767112698	0.20666675324231
Merged-chr12-78219356-4	chr12	78218808	78219808	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7347.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	5.91872864025301	6.30666629720383	5.63206370430985	6.42553172919569	6.46800874537291	5.81446076832396	0.478404157429045	0.188106798989408	0.57352205966475
Merged-chr1-171614159-4	chr1	171613670	171614670	+	802.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6760.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	3.38866710866983	3.46229441626796	3.4636884760646	2.88740258071893	2.88983682899618	3.43006546864226	-1.49251142129551	0.0388223039730146	0.244332975492519
Merged-chr1-173880321-4	chr1	173879850	173880850	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170853)	promoter-TSS (NM_001170853)	-163.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	6.48239285473059	6.71794516565835	6.30079610896479	6.36435672493196	6.48808425941516	6.16740860447266	-0.267171022033062	0.358327181334787	0.744628957930745
Merged-chr11-22857287-4	chr11	22856768	22857768	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2467.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.91216809368078	5.62705397044044	5.89217452120372	6.18447600614308	6.11446718441686	5.95367801052476	0.490482512833308	0.107582602134578	0.438123196868342
Merged-chr1-34830620-2	chr1	34830120	34831120	+	823.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	12430.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.20934443341108	5.33280862919438	5.34004125143156	5.2617749418633	5.08795811483262	5.4321324820568	-0.0750348468135192	0.83237824499293	0.960616839788396
Merged-chr10-34158972-4	chr10	34158484	34159484	+	819.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	-31012.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.90255930573047	4.85585252937289	4.5396671668469	4.55966314430618	4.71646348921379	4.6919838849324	-0.295726556746359	0.475934235853786	0.82223980850283
Merged-chr2-27476103-3	chr2	27475604	27476604	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-431.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	5.24818026375826	5.26524631173155	5.8220306541577	5.35553336037484	5.29260238685507	5.56766575027372	-0.108164165078401	0.772928332563128	0.943931380748419
Merged-chr10-115312415-4	chr10	115311932	115312932	+	965.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	3159.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	3.78715334591629	3.73345963764482	3.52958687096455	3.65491371907025	3.40676790121576	3.60138866589867	-0.48982383356224	0.390122521272167	0.769518914518539
Merged-chr1-36754375-3	chr1	36753821	36754821	+	839.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040290, intron 8 of 8)	ORR1C1|LTR|ERVL-MaLR	-7477.0	NM_009539	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	2.81621186223437	2.83572988319478	2.69206933079655	2.86312592930623	2.8591123919687	3.29081746916647	1.09486633903707	0.140656273426497	0.501122980058743
Merged-chr1-165621916-4	chr1	165621426	165622426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	12615.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.21480176539496	5.32645564508929	5.31596352391574	5.34788215622823	5.11751854088001	5.40898320009147	0.00379655721346072	0.991371277321725	0.998232145282024
Merged-chr5-136084495-4	chr5	136083998	136084998	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	582.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	8.44209672242499	8.32558325467843	8.00970193541064	8.43641696878304	8.58886260539946	8.00300079723924	0.134739139081635	0.601840848998564	0.882147380255146
Merged-chr4-8842440-4	chr4	8841903	8842903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1M5|LINE|L1	91079.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.05554528552166	7.16331970057104	6.95739032459841	7.31328248291788	7.53388671602065	7.30620397310641	0.492418836130937	0.0414708324234263	0.254570639932752
Merged-chr1-184034824-2	chr1	184034324	184035324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	443.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	7.11898558347917	6.56024090157475	6.85149300813108	6.99362451327523	6.97547440257936	6.92431047159106	0.154070307770136	0.576262152079721	0.871585692229598
Merged-chr7-38124274-2	chr7	38123773	38124773	+	698.666626	f0_balb.idr|f1_balb.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-16783.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.93999028526777	3.04463491503063	3.00358628983566	2.76435630667512	2.66302888848846	2.89812889266181	-1.15101685076498	0.110041353012772	0.443363350300229
Merged-chr7-141428614-3	chr7	141428116	141429116	+	752.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021316, intron 1 of 1)	intron (NM_021316, intron 1 of 1)	946.0	NM_001360485	57754.0	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	3.06001007577192	3.04882891864059	3.66704675043755	3.32622553460441	3.13297462950863	3.38945362861435	-0.00347721475057429	0.99597212299975	0.998961028701257
Merged-chr1-151285304-4	chr1	151284807	151285807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59179.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.90722412681506	3.76466439717673	4.00128638946723	3.69440152323443	3.42279260847667	3.56600610006636	-1.11620885861938	0.0456768022965508	0.269895992436543
Merged-chr6-108306423-4	chr6	108305914	108306914	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	93318.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	6.50747853494482	6.88621917491753	6.88607114577837	6.37096697192892	6.55776268163254	6.57957593746518	-0.417650721373025	0.132865707030427	0.487735022305017
Merged-chr11-6200198-4	chr11	6199684	6200684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173748, exon 1 of 6)	5' UTR (NM_173748, exon 1 of 6)	267.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	8.41374702514678	9.04418797161176	8.50185791140858	8.52809893816532	8.70925962889515	8.22892924584513	-0.250442315121749	0.35315648405585	0.740535792477092
Merged-chr10-79767609-4	chr10	79767086	79768086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-634.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	4.88924923797719	4.80583085898707	5.43115368420911	4.95554070869271	4.71570352257863	5.15194081079698	-0.249272840591523	0.559998792906469	0.865168019835518
Merged-chr3-146464970-2	chr3	146464443	146465443	+	675.5	f0_balb.idr|f1_balb.idr	3' UTR (NM_001293672, exon 7 of 7)	3' UTR (NM_001293672, exon 7 of 7)	14476.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	3.88205100026658	4.23095390867756	3.59960388189848	3.70139557764823	3.54096443492905	3.78378755379914	-0.853031748334514	0.139948449224265	0.499928328813492
Merged-chr3-88649523-4	chr3	88648995	88649995	+	939.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3647.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	3.44807263072869	3.48603358638952	3.45736134642003	3.53407853289373	3.31693151283028	3.47334745997192	-0.0905051304464113	0.876718604402047	0.971370432413299
Merged-chr13-9419385-4	chr13	9418886	9419886	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142861.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.13371294636308	5.240719777514	5.06186879276574	4.99506323883129	4.82854854111321	5.12629419003952	-0.370614534188007	0.319481583387949	0.713488854059233
Merged-chr1-127782335-2	chr1	127781835	127782835	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	L1MB2|LINE|L1	8171.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	4.10866631139569	4.23396610954782	4.34293065041657	4.44996937353213	4.49642479238997	4.41035567429101	0.606335732596724	0.174159488632857	0.55334916165878
Merged-chr16-90214190-3	chr16	90213691	90214691	+	606.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6551.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.61340579789202	3.7003543798403	3.77264032637883	3.62188314011028	4.04523976272141	3.62975840164469	0.324406627058875	0.565961686309896	0.867026419855911
Merged-chr2-29632387-4	chr2	29631880	29632880	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	L1MB3|LINE|L1	12660.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.69413245079865	4.45753526945078	4.19365377729718	4.26395943665073	4.38855744804718	3.94332901269024	-0.648377416869033	0.198950636713891	0.587406308270863
Merged-chr8-25593662-4	chr8	25593166	25594166	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 3 of 10)	intron (NM_173012, intron 3 of 10)	3821.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	6.40004220322006	6.73101834326538	6.63524774278277	6.70456541602301	6.64997591194232	6.86092889531495	0.220825351653856	0.411298575117997	0.783877099438722
Merged-chr11-120570696-2	chr11	120570193	120571193	+	734.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 2 of 10)	B1_Mus1|SINE|Alu	2560.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	5.32566894396463	5.29441812038075	4.95123143752937	4.22869088515003	4.01794208322855	4.3477925280904	-2.51642858217352	1.69280936511713e-08	1.45361487773649e-06
Merged-chr16-56729277-4	chr16	56728773	56729773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172825, intron 15 of 15)	MTB|LTR|ERVL-MaLR	-11823.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	4.39864494750276	4.30975820131395	4.67724305869717	4.12018049884455	4.08796459586059	4.63357555319718	-0.443997139980786	0.365920526025296	0.751005707138497
Merged-chr13-94976384-4	chr13	94975909	94976909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172590)	promoter-TSS (NM_172590)	65.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	8.24190288786071	8.23509235593755	7.83089858770189	8.34648462436846	8.103492873045	7.62448535064151	-0.0784791766142274	0.776434934037437	0.944843997124575
Merged-chr11-86542203-2	chr11	86541703	86542703	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114334, intron 1 of 14)	intron (NM_001114334, intron 1 of 14)	2604.0	NM_028259	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	3.01554574340264	2.81272461345472	2.96233751624731	3.00261862450821	2.53622837483345	3.09314985326333	-0.153753308148371	0.845001072319035	0.963760118842549
Merged-chr2-120135632-2	chr2	120135132	120136132	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	L1MA4A|LINE|L1	18943.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.18282203126893	5.41842392684415	5.26859942304398	5.14967592759017	5.48427474651428	5.39411837327764	0.115287913775295	0.745712121996231	0.936251303305737
Merged-chr7-80628844-4	chr7	80628337	80629337	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-7180.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	4.50577193915333	4.52819829335305	4.81454309741688	4.80175348906209	4.46448550984367	4.44100264854508	-0.0804700140440855	0.854366789375947	0.965987623019113
Merged-chr10-59236652-4	chr10	59236125	59237125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14703.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.82713509431591	7.81293869548415	7.79818099870966	7.88179671961228	8.23745901942981	7.57638643069738	0.178979307982642	0.485835611785659	0.827573679263522
Merged-chr2-103019259-4	chr2	103018733	103019733	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54280.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.06632312265923	3.84472034973835	3.81154329372645	3.93816025218394	3.48808137915963	3.54879031570943	-0.77908874643699	0.173156171734543	0.551916379659197
Merged-chr16-22446091-4	chr16	22445615	22446615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6545.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	6.55879517736369	6.37438591719273	6.288212269556	6.45470727746718	6.70592619868523	6.80742488524158	0.393006379346217	0.157694509880236	0.529197208232091
Merged-chr19-44104600-4	chr19	44104106	44105106	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162410, intron 1 of 20)	intron (NM_001162410, intron 1 of 20)	2871.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	4.67409232461547	4.66791239099351	4.65162590448191	5.10190230221635	4.7525830619905	4.67737107223995	0.447533122726421	0.276063357908367	0.673393624422867
Merged-chr2-29964529-2	chr2	29964029	29965029	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1031.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	4.95059945841165	4.74482190808854	5.2609470260414	4.84708766394031	5.28253980027599	5.38104960147674	0.411668539771065	0.316562435652735	0.710619341888818
Merged-chr11-46076672-4	chr11	46076161	46077161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291890, intron 3 of 22)	ORR1D1|LTR|ERVL-MaLR	20677.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	5.06633830384243	4.39819235130348	4.35178328284993	5.37944387222207	5.41671486297171	5.3047061255727	1.49907542198411	0.00114118529629919	0.0199696626991509
Merged-chr16-65577432-2	chr16	65576934	65577934	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14737.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	2.95746951143465	3.31951609157503	3.15841012050026	3.46549670932194	3.12627584872875	3.28998651742636	0.588735251225775	0.378167304366845	0.760506544479555
Merged-chr11-77372518-6	chr11	77372049	77373049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	24269.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.63526336868217	6.40963518744407	6.14785476327254	6.5155068288983	6.89112523192285	6.84019910075225	0.535974292569345	0.0690783637748038	0.34395473619309
Merged-chr4-3084428-2	chr4	3083928	3084928	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87655.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	3.27346924271449	3.38875399497193	3.24144941940005	2.94539335889918	3.12175227670319	3.52557752899372	-0.36212145130826	0.594962289547654	0.87924603206665
Merged-chr19-55899007-2	chr19	55898507	55899507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	3686.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.01344927550129	3.80257364516723	4.09334450387594	3.74354310667725	3.52785921248838	3.93234279210132	-0.755228385385018	0.166591320257984	0.542024344100504
Merged-chr14-41013773-4	chr14	41013246	41014246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316735)	promoter-TSS (NM_001316735)	87.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	5.27824007413952	5.56683124540983	5.27676632767124	5.43685943225489	5.65619682847111	5.13151126066465	0.103773546820669	0.778620313937858	0.945520893795831
Merged-chr4-98923299-4	chr4	98922796	98923796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146144)	promoter-TSS (NM_146144)	-514.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	6.36795621110764	6.44464163858723	6.39615679932838	6.52772479935395	6.65927323070924	6.37889398479677	0.214356242532302	0.425375885832298	0.793033624044046
Merged-chr10-94967384-4	chr10	94966896	94967896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22818.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.86396983126248	4.34005070308232	4.02930084464689	4.10709974163432	3.96942705827879	4.10166856512588	-1.10114777640903	0.0368070177754839	0.236296453596363
Merged-chr19-10709018-2	chr19	10708518	10709518	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	B3A|SINE|B2	8250.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	2.65917455755588	2.6524023915654	2.88701561392979	2.69183151700263	2.47385352255476	3.07047984600169	0.156897236913921	0.844571672471819	0.96373428957366
Merged-chr13-49325138-2	chr13	49324638	49325638	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15930.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	3.25762197458579	3.28481061811181	3.22915545176068	3.27260293282592	3.18931388490115	3.6194341729971	0.421162140342183	0.504796549963155	0.837836810464043
Merged-chr11-116131879-2	chr11	116131379	116132379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-751.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	5.91455955938554	6.13875737467284	6.12743672931759	6.23764230214211	6.21740150197553	6.34729972453608	0.342652601380695	0.229715712435856	0.625403875478165
Merged-chr9-65693191-3	chr9	65692710	65693710	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172536, exon 10 of 10)	3' UTR (NM_172536, exon 10 of 10)	16662.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.1195337472138	2.94156299008624	3.30797635938637	3.04077715660338	2.88792828299072	3.42942338203015	0.0258528649647878	0.970783726849309	0.993560292853483
Merged-chr15-83465223-3	chr15	83464735	83465735	+	811.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-629.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	4.44875951840468	4.20204190169819	4.4392152420674	4.18529797643582	4.28386681484698	4.58432390731389	-0.0301605450077083	0.948155704829526	0.988082186378433
Merged-chr9-35053930-2	chr9	35053430	35054430	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 6 of 10)	intron (NM_009178, intron 6 of 10)	-62798.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.68670775677563	3.56627601163134	4.13450680495422	3.85127157733603	3.73139690022736	4.11634249619651	0.292167613706969	0.607955578942351	0.884832656637721
Merged-chr15-58986013-1	chr15	58985513	58986513	+	801.5	f0_balb.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52203.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.32849564697571	3.99199768634578	3.57161153949182	3.5399698916783	3.17652081684307	3.46438605884987	-2.13948494946426	0.000999173482720672	0.0180085364322515
Merged-chr2-143988944-1	chr2	143988444	143989444	+	557.0	f0_c57.idr	exon (NM_024281, exon 2 of 24)	exon (NM_024281, exon 2 of 24)	22319.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	3.30867871842659	2.82749391063943	3.53599993060527	3.50711619950409	2.8898156691688	3.23000876549233	-0.0857986992498347	0.911092680692263	0.980017061055921
Merged-chr18-3006329-3	chr18	3005828	3006828	+	696.344421	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117084.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	5.11911720007186	6.2111949119537	5.8486155160239	4.95081401668236	5.34040393234777	5.61469409632772	-0.893330717110935	0.0457290476846849	0.270089622355711
Merged-chr4-147814703-4	chr4	147814203	147815203	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-4915.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	3.77331984024601	3.6038714355768	3.92686104635643	3.89193165380118	3.91394793994586	3.74419986515794	0.288645238359585	0.588201328147951	0.876237788811978
Merged-chr10-128495576-4	chr10	128495084	128496084	+	871.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 4 of 6)	intron (NM_172259, intron 4 of 6)	-1698.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	4.02765422937155	3.9753756529114	3.979934156762	4.17304152512212	4.1707849244577	4.19241015134154	0.527476709944253	0.266738899918212	0.664188627163631
Merged-chr16-55799051-4	chr16	55798547	55799547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23091.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.73181574547411	6.59318271942688	6.37302307813567	6.32066157421391	6.65290834615321	6.31253225530351	-0.213747324919223	0.459121025888784	0.813408472557892
Merged-chr14-75165594-2	chr14	75165094	75166094	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	29169.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.2012919123484	6.1546904755513	5.90658137439864	5.9635231287239	5.98610281021522	5.96818002508731	-0.224399552412169	0.445233392934895	0.805019125582936
Merged-chr3-15470300-4	chr3	15469796	15470796	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43869.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	2.42391689769982	2.6159274577855	2.426967724163	2.60476890944148	2.68231974453335	2.69577361553057	0.953178568515958	0.230808573052837	1
Merged-chr9-107553982-2	chr9	107553476	107554476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-607.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	6.69654615287894	6.40522712224429	6.35109627916716	6.3376779463537	6.51293470413146	6.37189032075793	-0.138247740273961	0.621970377685806	0.890924463951533
Merged-chr11-69930237-2	chr11	69929737	69930737	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5662.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	2.86096185425408	2.58499535361316	2.83383750796052	2.85205505286011	2.78060192598784	3.02391654246813	0.610294369488791	0.408067364905732	0.781926100186554
Merged-chr9-116164176-4	chr9	116163666	116164666	+	939.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	11197.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.00849858064597	5.59430323213145	5.76768542812524	5.32431600973738	5.03712285519028	5.22146221549347	-1.17043595739346	0.000867552134184425	0.0161420567936533
Merged-chr6-137473124-4	chr6	137472639	137473639	+	927.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	46756.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	2.89306148872811	3.01152373506779	3.12962599740145	3.00224416868466	2.61182377505197	2.78261438574279	-1.00944168988997	0.177826346091399	0.55892688546374
Merged-chr3-126625687-4	chr3	126625196	126626196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28745.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.81774989494111	8.14892085556953	7.42559427487061	7.63748219653198	7.93814812923264	7.4491861321113	-0.203355199913369	0.477580329714464	0.823237639056184
Merged-chr19-29461438-4	chr19	29460924	29461924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	50505.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.74416810678858	6.42127390788223	6.51320980412697	6.6636799364926	6.41681864903643	6.40617250648349	-0.107763490372248	0.698932341029384	0.920482326683788
Merged-chr6-29536961-4	chr6	29536478	29537478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_012057, exon 9 of 9)	3' UTR (NM_012057, exon 9 of 9)	7696.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	5.17701536177697	5.23652013970695	5.52392712359257	5.04567030658838	5.1944338728158	5.66112909096832	0.00610445138285403	0.987398390276312	0.997218304929226
Merged-chr16-32395319-2	chr16	32394819	32395819	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-5187.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	3.59556112081535	3.42992743201094	3.4190215114276	3.41080769985139	3.68711888245157	3.7522402145526	0.491781123234471	0.399800471666157	0.776186976980274
Merged-chr2-144267851-4	chr2	144267344	144268344	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	-1642.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	7.41649025873842	7.85682859941048	6.94883051247795	7.8126442039757	8.06523605336369	7.37220038761509	0.457122285886647	0.160932348907245	0.533655406039239
Merged-chr11-74830833-4	chr11	74830318	74831318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-106.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.75386617204788	8.5980739132433	8.28715192718907	8.48410178082256	8.71311980592193	8.33625548075253	-0.0559893089335812	0.814683679785074	0.956369939298364
Merged-chr13-113636598-2	chr13	113636098	113637098	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18034.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.42619536878798	6.57016195319918	6.10326788113571	6.16531368076691	6.49362460431166	6.09474011298511	-0.191189669191682	0.535960659778239	0.85376116739404
Merged-chr2-34752459-3	chr2	34751953	34752953	+	816.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	2779.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.7953174521397	5.01398184723958	4.72701418569107	4.80676210654395	4.68651473249242	4.83224176305846	-0.198725524109593	0.617470294919945	0.888810836054056
Merged-chr1-33983745-4	chr1	33983253	33984253	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	Lx6|LINE|L1	-28072.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.59792784855026	4.43608524934011	4.17587344955222	4.16000957578445	4.3403457144216	4.51370653616982	-0.213620611960054	0.648863419526303	0.901963404198945
Merged-chr6-39530362-2	chr6	39529862	39530862	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	27472.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	3.93392348090411	4.4282689231037	3.90591885043226	4.09063655170466	4.10343053567889	3.86900290363451	-0.263029883129252	0.622365397661771	0.891106790250898
Merged-chr8-27041861-2	chr8	27041361	27042361	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054057)	promoter-TSS (NM_054057)	-694.0	NM_001039078	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	5.90526879612137	5.77947783600173	5.75852928271654	5.97034546632561	5.67090862800518	5.23140926310817	-0.266366335201181	0.455275299860795	0.810850567748235
Merged-chr1-172368959-4	chr1	172368495	172369495	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-7536.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	4.87807266241021	5.26355103397056	5.12139669082856	5.08868056354052	4.99580918446562	5.31074174612838	0.0627816972210273	0.869487889624665	0.969798920359083
Merged-chr19-21897606-4	chr19	21897134	21898134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119294.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.57338890392407	4.63343011407138	4.76703419799008	4.38478362359836	4.51530927673895	4.56259934757879	-0.406984805762745	0.332972279491487	0.723927708416112
Merged-chr16-32608926-4	chr16	32608438	32609438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011638)	promoter-TSS (NM_011638)	42.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	7.37525739200875	7.34748273009362	7.71058547473493	7.32041616199273	7.41784283831906	7.41192665574138	-0.141847811855995	0.556900640790058	0.863865112858805
Merged-chr7-132621712-2	chr7	132621212	132622212	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	11069.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	3.6431726273473	3.47172543181813	3.71721769416754	3.91150318655876	3.45100177305727	3.73612800872443	0.336507129222946	0.560642067020733	0.865261302076164
Merged-chr12-27313140-3	chr12	27312629	27313629	+	855.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29589.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	3.77440535941344	4.14872211422377	3.74392674685824	3.10490725920535	3.05326405044222	3.49179174030012	-2.77328835134805	6.55870957559941e-05	0.00198017817984933
Merged-chr16-3732819-4	chr16	3732314	3733314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11285.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	5.41192691733931	5.57219510932485	5.318188686549	5.51119162157771	5.49123685996234	5.50461148755745	0.106033418166068	0.749161745054328	0.93719392324485
Merged-chr8-82374674-4	chr8	82374155	82375155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	27931.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.31298912595228	6.4990383521067	6.47917878605255	6.30849616881379	6.40606313091605	6.41206348099632	-0.0900315250217822	0.738351733122472	0.934032187674406
Merged-chr9-21716012-2	chr9	21715512	21716512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7564.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	5.59694262361092	5.79870254798488	6.4014496562075	6.0935896554786	6.52234994323812	6.3907376043649	0.64596425007235	0.0690315294892078	0.343765366313843
Merged-chr16-38377000-4	chr16	38376501	38377501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081984, intron 3 of 3)	MTC|LTR|ERVL-MaLR	14811.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	5.67812094306719	5.59853386817264	5.66232856786846	5.42514047783156	5.34931437125193	5.44461325628457	-0.46206587569391	0.15181925581465	0.519559786042007
Merged-chr7-116603936-4	chr7	116603418	116604418	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	99549.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.38055802791272	5.56830928706376	5.3625247096751	4.94497876930428	4.93912586830814	5.06707793629086	-0.955012363669723	0.00721768271435361	0.0799160270520206
Merged-chr3-142493677-4	chr3	142493158	142494158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	5.66863107008276	5.41506919850761	5.35541813090478	5.97821207266596	6.00342210149802	5.9911194725134	0.898351230243121	0.0047564011052454	0.0591939310746723
Merged-chr19-4121570-4	chr19	4121078	4122078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-3.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	7.66742087657717	7.60494271979528	7.78846966554723	7.61632026985079	7.87190355232285	7.7868732445398	0.114940338374825	0.610054246047586	0.885428451824695
Merged-chr4-62667398-4	chr4	62666914	62667914	+	739.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-6560.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.94933045390532	3.87812771790029	4.28628059702094	4.23147232697236	3.98585549951249	4.43333670906429	0.510848889940529	0.317952954712681	0.711776126610212
Merged-chr7-101552954-1	chr7	101552454	101553454	+	549.0	f1_balb.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2848.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.11791616927713	5.92753142791678	6.08018294248924	5.84506576333894	5.95680069316213	6.14050588684438	-0.108036371930025	0.717190289833507	0.926979087819795
Merged-chr15-78243398-2	chr15	78242898	78243898	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1413.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	2.8116118701851	2.797967206335	2.78704696636748	2.90811423128235	2.8208128537704	2.92129045524558	0.414156034827676	0.554173153337481	0.86265765706144
Merged-chr7-132852578-4	chr7	132852064	132853064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347629)	promoter-TSS (NM_001347629)	83.0	NM_028095	72096.0	Mm.28631	NM_028095	ENSMUSG00000030960	Eef1akmt2	2010208K18Rik|Mettl10	EEF1A lysine methyltransferase 2	protein-coding	6.10852837321505	6.11923875572459	6.60968037605814	6.36650737149457	5.91117744774132	6.19032673460639	-0.209479725159253	0.519168248649905	0.845645439543914
Merged-chr5-150600373-2	chr5	150599873	150600873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-5848.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	6.20934945706253	6.26949542622119	6.22408400358187	6.28791291599632	6.47578299133176	6.26376883480088	0.196261155620992	0.476909009383031	0.823035255682739
Merged-chr3-86961232-2	chr3	86960760	86961760	+	739.5	f0_balb.idr|f1_balb.idr	Intergenic	RMER4B|LTR|ERVK	-25326.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	4.6439535691842	4.78436147792914	4.17226445237197	3.57887492898222	3.57037516785454	3.75969965507396	-2.93067465687518	2.68792496243714e-07	1.6982297667006e-05
Merged-chr7-35035616-2	chr7	35035116	35036116	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20950.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.83646139106123	4.05721958033107	4.53779282976757	3.76798269723422	3.60684239458819	3.90050475320048	-1.24615166876442	0.0270681709710573	0.195919308469009
Merged-chr5-38479171-3	chr5	38478694	38479694	+	834.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	1112.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	2.95211775766519	2.69768674530629	3.0020831144967	3.35720801831037	2.95877608617652	3.19356117340132	1.33667614430187	0.0640977191080722	0.329862519040475
Merged-chr9-5298614-4	chr9	5298127	5299127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009807, exon 1 of 10)	5' UTR (NM_009807, exon 1 of 10)	110.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	7.53654294487476	7.85147671292002	7.59723163536485	7.54970859317786	7.81312325386387	7.50513591518606	-0.0516342705238021	0.831648071812499	0.960478468368024
Merged-chr13-24813658-3	chr13	24813161	24814161	+	769.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024473)	TTS (NM_024473)	12004.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	4.47395297297378	4.36601197055292	4.97694513307286	4.45247225218072	4.97823843506365	4.90791656591878	0.415288812714605	0.375788343150517	0.758951282467405
Merged-chr4-88432617-4	chr4	88432101	88433101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	6325.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.30902522664906	5.1714681604389	5.14801202730146	5.36183053014277	5.57300461932364	5.10615093116455	0.321198670224769	0.377621696763798	0.759992892422651
Merged-chr5-123715837-2	chr5	123715331	123716331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	5213.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	3.42405741237474	3.48473796091918	3.93626642017682	3.63024997576882	3.61502670004972	3.72165131010153	0.100367750059963	0.863739619455544	0.968269312109804
Merged-chr13-60357207-1	chr13	60356707	60357707	+	655.0	f1_balb.idr	Intergenic	Intergenic	151736.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	5.04486587695573	4.56089604666427	5.35477442718044	4.71795302548792	4.83641769522544	5.15787247617493	-0.232165190429567	0.604568262237418	0.88314896167691
Merged-chr11-117709405-2	chr11	117708905	117709905	+	630.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	55116.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	2.8457800243131	2.61150972293777	2.75607010823863	2.79296673058203	2.92982116805025	2.89097320527686	0.676665787634023	0.35334637311854	0.740678801220493
Merged-chr6-32587204-2	chr6	32586708	32587708	+	809.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	RLTR20A4|LTR|ERVK	984.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.60541941228478	4.55705586182568	4.47480186795734	4.38038104961837	4.23038489364577	4.22450059280109	-0.696277134456606	0.113154475754675	0.44938889230771
Merged-chr14-47276215-4	chr14	47275710	47276710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080843)	promoter-TSS (NM_080843)	647.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	5.94190626070667	6.03599045091665	6.00797625061746	5.90820656827074	6.42843448017801	5.95069805269172	0.236927496093416	0.458311722702253	0.812961658694989
Merged-chr15-34443358-4	chr15	34442867	34443867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028101)	promoter-TSS (NR_028101)	-91.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	8.0618779411088	8.20565996421227	7.81257239056609	7.88009082642963	8.09622600259696	7.80863332208995	-0.147257517283515	0.533014431262157	0.85211852129691
Merged-chr12-31921227-4	chr12	31920703	31921703	+	970.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29042.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.14398412948795	3.95658921315448	4.5708245876403	4.85623453312193	4.90089317227121	4.93153274360555	1.64902387821322	0.000367215741126581	0.00821378693216681
Merged-chr2-45107759-4	chr2	45107277	45108277	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2500.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.28620934573028	7.36245114830952	7.37783408243988	7.63648798759052	7.79049413751568	7.34565072811136	0.398469649062292	0.10061644726074	0.423155931693347
Merged-chr11-58983090-1	chr11	58982590	58983590	+	1000.0	f1_c57bl6.idr	intron (NM_053168, intron 3 of 5)	intron (NM_053168, intron 3 of 5)	4997.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	2.90904682424992	2.94036271296678	2.91201957421588	3.48559397700187	3.51558503461735	3.18226135724908	2.19776868461488	0.00157222454254911	0.0256462771488779
Merged-chr12-91660837-4	chr12	91660333	91661333	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-70346.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.08941952821841	3.96786325461102	3.84045269304574	4.17176005378952	4.00880932194714	4.15946889618397	0.394116463628938	0.426055416958261	0.793571489138024
Merged-chr10-61382229-5	chr10	61381821	61382821	+	792.084473	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	1202.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	4.51252924971038	4.66216416448373	4.69241928360241	4.34935953541931	4.51292440781832	4.68183245388454	-0.258613874729971	0.544766961318022	0.857894224757806
Merged-chr5-103614354-7	chr5	103613835	103614835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 3 of 5)	intron (NM_029415, intron 3 of 5)	15068.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	6.09548293971546	6.12518421978699	5.84728539698231	5.87005316682154	5.86670553177721	5.93373502056186	-0.262378581374895	0.378977166055165	0.761535799081011
Merged-chr6-143168516-4	chr6	143168016	143169016	+	940.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	1286.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	5.58060260575831	5.61945458355559	5.47214896660914	5.82271221869618	5.95671393698232	5.4088877642695	0.370947856410134	0.276612839142759	0.674003097641857
Merged-chr5-124454942-2	chr5	124454442	124455442	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 4 of 6)	intron (NM_001310725, intron 4 of 6)	8238.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	3.16747509759849	3.02431006860187	3.38883374150224	3.25234272904351	3.17948805515367	3.35267924323491	0.269344680541558	0.674723312237459	0.911853445810291
Merged-chr14-77921937-3	chr14	77921428	77922428	+	649.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	B4A|SINE|B4	17689.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.33528213379582	4.18553036264617	4.48001239000398	4.56525311209629	4.52399556502652	4.81120148601612	0.756535899435763	0.086502184402878	0.38958991933936
Merged-chr11-76493942-3	chr11	76493425	76494425	+	790.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	570.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.92158970415064	5.88705480918306	5.6858734370258	4.99318197230873	4.97365214461835	5.06477342190902	-1.63704103441915	1.52809962282462e-06	7.84877243308584e-05
Merged-chr6-65143623-3	chr6	65143125	65144125	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1105.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	7.32564518620865	7.56493905718613	6.4036152795616	6.93496574019758	7.19807210148809	6.12901203695691	-0.543784043060755	0.443794503126044	0.803884349333946
Merged-chr19-3880602-4	chr19	3880098	3881098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	24632.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.96621877713677	6.12929856156296	6.0682564078637	5.96958162616091	6.26208376910662	6.08466534375724	0.105615249175084	0.719697729054021	0.927940011453118
Merged-chr11-115139044-4	chr11	115138560	115139560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	MLT1H|LTR|ERVL-MaLR	-5068.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	6.49724631416316	6.42975715863745	6.37917150592536	6.50133515586415	6.36141563789795	6.36174128586055	-0.0477109410649402	0.857969534691473	0.966785186918462
Merged-chr1-80641985-4	chr1	80641470	80642470	+	967.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23382.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.7430503310268	5.56496486860879	5.40256503880814	6.07181276317676	6.31376204473541	5.87300621497297	0.927769902164996	0.0046746088527118	0.0584409780692195
Merged-chr4-150910733-2	chr4	150910233	150911233	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	-812.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	4.44460213437629	4.37885891100442	4.55327662033845	4.49172892766469	4.70818933187388	5.01220075353811	0.700727240190255	0.108246190753936	0.439439757112793
Merged-chr2-156200042-3	chr2	156199541	156200541	+	842.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	3394.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	4.73611113839784	4.58120800190543	5.04299580131646	4.84771405350419	5.56644855512998	5.41272869723635	1.10794060786076	0.00969141384883765	0.0983533389346123
Merged-chr11-75588807-2	chr11	75588307	75589307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	728.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	7.27431683346837	7.08319772473419	7.38288862068091	7.23832506156181	7.3205190656046	7.29919988461556	0.0600100375622093	0.800943414569912	0.95272776419586
Merged-chr8-83201152-4	chr8	83200650	83201650	+	882.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	(TTTTTA)n|Simple_repeat|Simple_repeat	35798.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.03721594404402	6.47128330263072	6.22674000574521	7.37953770001908	7.39595975610629	6.77819712514007	1.5004688005843	1.02220576177641e-06	5.51965615539045e-05
Merged-chr2-122454192-4	chr2	122453705	122454705	+	853.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356532, intron 10 of 17)	intron (NM_001356532, intron 10 of 17)	13385.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.19982534548673	4.45768017738417	4.40252880326747	4.60039009245185	4.54638459106533	4.78542849492989	0.707475967549806	0.105649893194368	0.433764288115161
Merged-chr18-46526036-4	chr18	46525520	46526520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173423)	promoter-TSS (NM_173423)	-49.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	7.75318975258924	7.6414552617311	7.51325108668878	7.59384523291729	7.63198797747528	7.77213721839924	0.029784530496161	0.894960639337283	0.97562294541392
Merged-chr6-43260943-4	chr6	43260498	43261498	+	829.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-4646.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	3.67590322762186	3.95259689988362	3.80466828185482	3.96582795335115	3.8949473504454	4.20355261464862	0.617888924593248	0.238823634652707	0.635539113220622
Merged-chr1-12983365-4	chr1	12982844	12983844	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172841, intron 1 of 8)	intron (NM_172841, intron 1 of 8)	7791.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	2.39565180796949	2.32704868329125	2.64015592323507	2.75141620582527	2.35181892633308	2.24826749955207	0.0592604016811968	0.947358589889991	1
Merged-chr9-40781394-4	chr9	40780905	40781905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19868.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.31539420675838	7.37056745791736	6.80801855786826	7.05123171277948	7.38643393492172	7.5105409521716	0.192970749583267	0.497271499019425	0.833503910714819
Merged-chr6-3201482-4	chr6	3200978	3201978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87041.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	3.74682854525163	3.71799887812669	3.29327895100052	3.69610803067202	3.70504577696164	3.60843375349502	0.20984511396906	0.726245745737822	0.929763581417168
Merged-chr19-5953043-2	chr19	5952543	5953543	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	11163.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	5.4325449494324	5.04777418081463	5.23811712743798	5.45682838976431	5.348212733533	5.39616238985408	0.296394736478327	0.403356980998876	0.77875989555314
Merged-chr17-70829369-4	chr17	70828887	70829887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17390.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.80956403327804	6.57327918325843	6.72009448341316	6.46333456607413	6.80559052718867	6.7001381183992	-0.0560523844056269	0.835502072655432	0.961741643769378
Merged-chr5-102070651-4	chr5	102070141	102071141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-720.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	8.50277305813103	8.6167851039093	8.4972779517462	8.41924398628392	8.76686954832661	8.41841017447859	0.0141488894211973	0.948772447292719	0.988169196639905
Merged-chr2-32502064-4	chr2	32501569	32502569	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33290.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	4.54467187981767	4.4734629618633	4.58959303781572	4.72869343633382	4.76299778661129	4.44008168665163	0.310660948208692	0.46226096255505	0.815159087955196
Merged-chr14-54553578-2	chr14	54553078	54554078	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145462, intron 1 of 9)	intron (NM_145462, intron 1 of 9)	783.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	4.89368890325463	4.99303744704948	5.12280960303897	5.09533469293452	4.79546863776708	5.08815469955554	-0.0195126108265317	0.959461864769643	0.990200345348868
Merged-chr10-13552565-2	chr10	13552065	13553065	+	938.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025748)	promoter-TSS (NM_025748)	-342.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	5.63382921111359	5.54769889586075	5.5825028518421	5.71490171180577	5.78370545008408	5.19441777114988	0.0331693546944657	0.925131409205556	0.983120489108249
Merged-chr4-134730146-4	chr4	134729664	134730664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-25874.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	6.58999655391772	6.61491523814399	6.41045348176576	6.43529912512086	6.69146919507392	6.50711506831242	0.0124009879038264	0.963312674555995	0.991095051079597
Merged-chr6-38937944-2	chr6	38937444	38938444	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	MER96|DNA|hAT-Tip100	18958.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.76943274532414	6.99185378629948	6.76449182562298	6.57196494792079	6.77887924692638	6.64616326606255	-0.277564071237427	0.285895991257974	0.683351535119886
Merged-chr5-32197898-4	chr5	32197405	32198405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34803.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	4.53541112211648	4.38993890415523	4.4740769212972	4.41876197879777	4.5724853533016	4.45546518701152	0.0544901983230246	0.898976003471137	0.976432549466174
Merged-chr10-80249163-4	chr10	80248717	80249717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029272)	promoter-TSS (NM_029272)	-235.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	7.08526973774063	7.20669901716143	7.04431699274577	7.18683071670442	7.44287835761949	7.22852288170431	0.26851911069012	0.2666130696486	0.664166899200562
Merged-chr1-170934595-4	chr1	170934098	170935098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7015.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	6.74860587036667	6.78127151196353	6.68036228544115	6.07831324755572	6.61625798881445	6.32881576980815	-0.588171590614819	0.0434018276594642	0.26177423897297
Merged-chr1-189921906-1	chr1	189921406	189922406	+	1000.0	f1_balb.idr	intron (NM_026796, intron 1 of 11)	CpG	385.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.22049831149612	3.18350057460041	3.03661676814445	3.00246262918722	2.80015470128775	3.16809297939951	-0.732709446104147	0.290103633883846	0.687733205116261
Merged-chr15-99025889-2	chr15	99025389	99026389	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4002.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.68366334204644	3.43813413822941	3.82110177827723	3.56930927666856	3.57322791262043	3.53237085877183	-0.317238316685726	0.579293385251539	0.872463147987439
Merged-chr8-66861912-3	chr8	66861406	66862406	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	1689.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	4.55486260062713	4.37500311340496	4.35279736944014	4.37460550816337	4.14264992670309	4.33121580286605	-0.404466747624295	0.370940392740792	0.755139623370806
Merged-chr13-21779449-4	chr13	21778938	21779938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020034)	TTS (NM_020034)	1187.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	7.13625984306091	7.69509239249802	7.23690499360417	7.77126717433839	8.17417578392273	7.7924830337375	0.786608269932465	0.00448697971328046	0.0567663992675445
Merged-chr11-4986857-4	chr11	4986365	4987365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007454)	promoter-TSS (NM_007454)	41.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	6.43777608108058	6.74687515541686	6.54471014901526	6.33666118193688	5.9570840571158	5.89045130474552	-0.832673926330086	0.00593146320083494	0.0692297990308959
Merged-chr3-40523003-4	chr3	40522461	40523461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-49.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	5.28359602253852	5.28785501013785	4.88077671356254	5.65146354227196	5.59960156794864	4.99100269863374	0.557704516118593	0.168336184835118	0.544864752581325
Merged-chr7-75370691-1	chr7	75370191	75371191	+	710.666687	f0_balb.idr	Intergenic	Intergenic	-61429.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	2.59706062514588	2.58773060304088	2.77927091778932	2.54126670708939	2.38323891190713	2.79324576088591	-0.433763356701821	0.588634019201869	1
Merged-chr7-45277436-4	chr7	45276947	45277947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5426.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	5.73509303765862	5.58251265224894	5.16866652493513	5.66934096088237	5.68822427046982	5.23518710769526	0.0541650976194124	0.884967937569227	0.973538624783452
Merged-chr4-129504808-3	chr4	129504303	129505303	+	726.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8778.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	2.61481440691613	2.69170242743656	2.73433397433725	2.56174372263175	2.58364639464673	2.62212084059213	-0.515921334336555	0.493468444886818	1
Merged-chr5-115237953-4	chr5	115237443	115238443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026398, exon 2 of 6)	5' UTR (NM_026398, exon 2 of 6)	2092.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	6.11028613246599	5.95557584357564	6.2126134608553	6.15242590209017	6.06221151301012	5.99174747353117	-0.0291992713519742	0.920041436857596	0.982226665414691
Merged-chr4-45890259-4	chr4	45889754	45890754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-49.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	3.69952432253606	3.72130124602438	3.77137207123186	3.49082983377204	3.54959871347931	3.74076150981162	-0.473804930600318	0.388879414256944	0.768760027119617
Merged-chr17-47629507-4	chr17	47628993	47629993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1197.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	6.48678541820872	6.63638935741308	6.31599037602132	6.90012188511865	6.60152085242647	6.37645847044148	0.249270415964357	0.392669985424262	0.771232955203162
Merged-chr1-87649750-2	chr1	87649250	87650250	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	29438.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.59076500827734	6.43390266314921	6.60157017562186	6.67883333462513	6.69201372225958	6.72481201299728	0.249406931570711	0.330918069282908	0.722226411767471
Merged-chr11-119355923-2	chr11	119355435	119356435	+	943.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	378.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	6.79951848702263	6.73515571916601	6.4524189229685	7.14635569233013	6.94841353477626	6.64186441412363	0.397453955126847	0.158213787968357	0.529917060944743
Merged-chr16-8829895-4	chr16	8829390	8830390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-210.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	8.50606628379899	8.68404034856961	8.34380554519321	8.42229629253403	8.54817229620886	8.56096393834534	-0.0166173675338082	0.938179244959979	0.986279451858875
Merged-chr5-104025617-3	chr5	104025096	104026096	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	4.32317775594131	4.48860369451136	4.37807183282994	4.52425572500893	4.3262336415789	4.72540482199322	0.312145196908903	0.484333730222733	0.826794432521042
Merged-chr2-4503295-2	chr2	4502795	4503795	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	B3A|SINE|B2	-56459.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.22020912382314	4.14211392531223	4.06787195662701	4.89234630067598	5.04278734156457	4.92387647788772	2.00280663775156	5.11719776135269e-06	0.000225884239430576
Merged-chr1-37344661-3	chr1	37344089	37345089	+	963.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-24628.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.17659016868157	4.03426528245335	3.88598105598361	3.46199204277141	3.48820035325149	3.45774607662607	-1.96739273772532	0.000577183576402777	0.0117625008634147
Merged-chr15-43282726-4	chr15	43282226	43283226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008388)	promoter-TSS (NM_008388)	10.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	7.49084139163026	7.87133547722635	7.45126541835475	7.43218345538117	7.52794063945223	7.02933959303942	-0.390492908082676	0.15030098633889	0.517246479850651
Merged-chr6-31455654-3	chr6	31455153	31456153	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	intron (NM_013791, intron 8 of 17)	56825.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	5.6170339446127	5.19039461962602	5.14211719753702	5.97982183203976	5.64380845717234	5.65265375666944	0.795910125043022	0.0286331681023441	0.202821554177382
Merged-chr3-121370575-4	chr3	121370070	121371070	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55971.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	4.79566159925916	5.05325496735034	4.83109174924089	5.24676694196006	5.24319770523195	4.73189232124477	0.436715178872685	0.282718104995684	0.680653764525711
Merged-chr5-99345491-4	chr5	99344940	99345940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-92513.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.42117303932261	7.1345052575358	7.20775998042757	7.21022917873824	7.47581247340039	7.16673316167762	0.0553714653052736	0.825273196003699	0.958787675305787
Merged-chr4-150799680-4	chr4	150799164	150800164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54132.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	6.45012475934987	6.5651609615403	6.33087646975537	6.10092860419645	5.94489594687445	5.92800829568538	-0.777341255562613	0.00605615765044668	0.070252441904136
Merged-chr13-41501030-3	chr13	41500524	41501524	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13664.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	2.3736395183312	2.3415556614115	2.66171506763991	2.42536790739357	2.36665790662145	2.67541959373512	0.177170753310368	0.830674146848599	1
Merged-chr10-31312387-2	chr10	31311887	31312887	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	3.1702950463463	3.11472255264921	3.42725356710717	3.06374614174705	2.94228845472988	3.17543283295684	-0.786393177163026	0.236259265998312	0.632649498304448
Merged-chr15-99033665-4	chr15	99033150	99034150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	3759.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.3169939596138	6.01624125304737	6.38639246208932	5.88358251123652	5.96234244655732	6.04896253377693	-0.477261633514517	0.110922924801542	0.444841551070303
Merged-chr4-117892019-4	chr4	117891502	117892502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026344)	promoter-TSS (NM_026344)	1.0	NM_026344	67728.0	Mm.13823	NM_026344	ENSMUSG00000028540	Dph2	9130020C19Rik|AI467389|Dph2l2	DPH2 homolog	protein-coding	3.31181576692558	3.39403691418103	3.54260335574168	3.47824183888393	3.32045133583842	3.5077241716264	0.0715958390671503	0.903778719862448	0.977858102400597
Merged-chr16-92821203-4	chr16	92820650	92821650	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	MLT1C|LTR|ERVL-MaLR	4924.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.46719545183325	4.50977294888778	4.11651070837659	4.43316250906166	4.19943788295016	4.42191930527114	-0.0952567692810307	0.838554807899112	0.962538562826178
Merged-chr10-128130822-2	chr10	128130315	128131315	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38032.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	5.19547248904578	5.23692525200714	5.27994428855021	5.4362061692726	5.2791203622317	5.24719834345864	0.179299370791074	0.602710078147823	0.882397657327329
Merged-chr3-106721707-4	chr3	106721216	106722216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039488)	promoter-TSS (NM_001039488)	34.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	8.46807543614598	8.80102098011835	8.25892413209952	8.19611893228037	8.68432964532048	7.82514070786553	-0.331761605482176	0.262686948344275	0.660711432133197
Merged-chr18-58134023-4	chr18	58133506	58134506	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 7 of 64)	L1MB8|LINE|L1	75920.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	2.87997873682816	2.86572488092529	2.79567840396791	2.89296438664809	3.08683769745754	3.05233841731271	0.789687856094065	0.255661975371719	0.652729945283361
Merged-chr17-34930591-2	chr17	34930091	34931091	+	681.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-662.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	5.3235880920618	4.96181247342693	5.4434910300017	5.50433478065269	5.61191872442714	5.00563448221673	0.315898201023858	0.42504672860395	0.792881858801002
Merged-chr2-11532373-3	chr2	11531865	11532865	+	689.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	21564.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.32144378532474	3.85816547945365	3.74520251597068	3.69649432534844	3.58926690103792	3.5505487428917	-0.166254820394821	0.781172588576203	0.946170623764308
Merged-chr12-76950504-4	chr12	76950002	76951002	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	11746.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.25316076995112	4.77328588314806	4.61833138822857	4.70651597835413	4.90169234213167	4.55945414094028	0.401757681127923	0.372003035376246	0.755997445123458
Merged-chr11-100761838-4	chr11	100761328	100762328	+	957.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010410, exon 2 of 2)	exon (NM_010410, exon 2 of 2)	1103.0	NM_010410	15171.0	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	2.55488841416664	2.6506259904585	2.84758647071649	3.27322037480784	3.12703733062963	3.0469617254756	2.52868327352469	0.00131187684188087	0.0222699077552141
Merged-chr11-116827491-2	chr11	116826991	116827991	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347633, intron 1 of 4)	intron (NM_001347633, intron 1 of 4)	555.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	3.00672076225909	2.71088523410795	2.87079806739295	2.3585076198502	2.41777600686187	2.57119244415725	-2.70221574203464	0.00262666738968854	0.0380449184324014
Merged-chr2-83714958-4	chr2	83714472	83715472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.72100716473934	3.98863500043128	3.6977661327972	3.79661659388563	3.6427415172186	3.76855367539746	-0.266200721343586	0.622821196396198	0.891249034616027
Merged-chr6-136965309-4	chr6	136964812	136965812	+	992.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10789.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	5.37963092782325	5.04476930821245	5.02118640320854	5.52418216902585	5.65206812751389	5.26663563934266	0.658618497626834	0.0739338448388527	0.357480815930691
Merged-chr19-4302420-4	chr19	4301908	4302908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3814.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.58693617923218	5.48118944309815	5.52645122359073	5.63257434151653	5.58352777454398	5.64451735825593	0.161128786352249	0.612042540865701	0.886473391147181
Merged-chr11-100527210-3	chr11	100526754	100527754	+	949.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	CpG	746.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	6.03653671943203	6.21108039733744	6.49282647145079	6.15275876937297	6.44914004653757	6.53512569882531	0.225816322355663	0.455450505356186	0.810928586858913
Merged-chr10-15189447-3	chr10	15188947	15189947	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	429158.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	3.58147434319994	3.77812557527324	3.48753169495351	3.12409687812984	2.99766984886105	3.14740144852751	-2.3231016558559	0.000500687223521251	0.0105045845927272
Merged-chr11-51817952-4	chr11	51817474	51818474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39507.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	6.253078805715	6.03965649519849	5.9570566668308	6.28825753487278	6.14505076981206	6.15579447442605	0.17167559548201	0.55469432338886	0.86290101194412
Merged-chr6-135161489-4	chr6	135160981	135161981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	MIR3|SINE|MIR	6734.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	5.42114097891207	5.30860799554056	5.56831746130525	5.71777623079073	5.75701826972712	5.51692928310209	0.467704666866603	0.155468077801674	0.525159710522295
Merged-chr9-58581533-4	chr9	58581103	58582103	+	874.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-637.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	6.92945205118135	7.207514330747	7.04759820390325	6.99126005012873	7.16684253810204	7.03948683626585	0.00474688995745276	0.984713587240809	0.996716154138789
Merged-chr5-3501287-4	chr5	3500792	3501792	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-42541.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	8.14718199929085	8.26013982191714	7.7728697251796	7.88995571043456	8.39030130120245	7.80246530964397	-0.0262152393881844	0.923674125243561	0.982727549942016
Merged-chr12-84101062-3	chr12	84100643	84101643	+	892.5238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172580, exon 1 of 3)	exon (NM_172580, exon 1 of 3)	489.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	4.16440941556959	3.86052727172722	3.65752862813131	3.52885356993018	3.58500150689508	3.49810981270024	-1.2678714951699	0.0281325836324515	0.200553120192686
Merged-chr4-147922365-4	chr4	147921873	147922873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 10 of 18)	MER58B|DNA|hAT-Charlie	14403.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	4.96638816835452	4.83172792446444	5.03636698479953	5.42116586330446	5.3039205086492	5.29967229796846	0.834568107267793	0.0198519020100768	0.160622040300902
Merged-chr16-55973764-4	chr16	55973273	55974273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173026)	promoter-TSS (NM_173026)	-31.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	8.81679398238374	9.32321810717639	8.65497501220529	8.71191462434245	8.89477924054055	8.71494248836772	-0.26351530835724	0.295846522197946	0.692708934886082
Merged-chr6-85333258-8	chr6	85332719	85333719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 1 of 13)	CpG	203.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	7.58124639325553	7.54199821315215	7.88466308321195	7.53109422196172	7.78163708420715	7.64110221097677	-0.0193463071737926	0.935422825859184	0.985852245513165
Merged-chr14-60269346-4	chr14	60268896	60269896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	4191.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	7.06287877376654	7.32365702533688	7.11797694466697	7.27536779466405	7.57942068807438	7.39672495640823	0.375286419622636	0.128245985757534	0.478953859197166
Merged-chr14-103071153-4	chr14	103070636	103071636	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033242, intron 1 of 3)	intron (NM_001033242, intron 1 of 3)	920.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	6.69532825328023	7.07934868294491	6.46555462575864	6.79944863541587	7.2645470991843	6.61934324664428	0.237264594292602	0.458945159701203	0.813252738642114
Merged-chr19-55741745-4	chr19	55741250	55742250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-60.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.11945892420487	6.58559086451452	6.82793393727455	6.93266919667348	6.94886697022019	7.10337149365276	0.196851970760315	0.474727038892952	0.821664499521211
Merged-chr5-98034048-2	chr5	98033548	98034548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3086.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	4.33245659888774	4.20432479509214	4.34745651859313	3.70744703664858	3.55093567643713	3.75327728110617	-1.99486558135275	0.000156548413279295	0.00411306611056001
Merged-chr14-104005442-4	chr14	104004922	104005922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	21720.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	3.81998452384433	3.29944493736751	3.36266905710411	3.53318876139624	3.35038528120313	3.05156629604235	-0.708137150049375	0.310916398746874	0.706156013400206
Merged-chr15-37008954-2	chr15	37008454	37009454	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	2.38259467558438	2.45131978158327	2.34327792546185	2.57327981068102	2.40498311445138	2.73601259366901	1.07493465422467	0.192377704096341	1
Merged-chr4-62404910-3	chr4	62404384	62405384	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139291, intron 1 of 3)	RMER1B|Other|Other	3739.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	4.23550886292101	4.54105190692768	4.50181421946516	3.46373206048241	3.23401152385004	3.57367781244847	-3.7639457222676	1.61232135497432e-08	1.39457417156656e-06
Merged-chr11-79225089-4	chr11	79224600	79225600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17924.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.79693792109565	7.90722647581354	7.65079205155939	7.92400990941929	8.15595299787074	7.88916390699053	0.295808593077527	0.194051477775438	0.581296921414137
Merged-chr11-120511333-2	chr11	120510833	120511833	+	845.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19394.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	5.64056583881375	5.57506453927213	5.63087093107949	5.57583874473325	5.60522072307341	5.3687605800618	-0.158732947851106	0.624331905998237	0.891957852311069
Merged-chr6-4086938-4	chr6	4086455	4087455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009748)	promoter-TSS (NM_009748)	-25.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	6.7068085743256	7.11130889914684	6.68067207283391	7.1177990237285	7.3354986500177	7.01391008239939	0.474476479415984	0.0839638476316983	0.383588449164643
Merged-chr11-32532844-3	chr11	32532347	32533347	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-419.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.65531762889653	6.68144191050967	6.20078545092908	6.45607507089113	6.12909882222244	5.86838990215416	-0.587549249453959	0.0690117482931689	0.343687428296505
Merged-chr11-106640420-2	chr11	106639896	106640896	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27466.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	2.790570728875	2.82611860391969	2.81952643115348	2.58901997793824	2.47926536560191	2.89213163485857	-0.833889056680093	0.284614217457563	0.682326259254607
Merged-chr7-133047466-4	chr7	133046982	133047982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32235.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	6.86976043104105	6.71774893845898	6.66659233168768	7.02918885135509	7.161453352113	6.77487349075975	0.385599552773594	0.140688918718298	0.501153454716047
Merged-chr14-55644348-6	chr14	55643819	55644819	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028780)	promoter-TSS (NM_028780)	-513.0	NM_028780	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	6.97014581957969	7.36699404564594	7.22263560534806	6.81558416400916	6.93600930046118	7.18719334599625	-0.325086975926122	0.220690738424038	0.615266198578951
Merged-chr2-167843645-2	chr2	167843145	167844145	+	565.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-88682.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.17404423897588	4.26152084938612	4.01808586908462	4.17717902277401	4.07070798955911	4.13654167288488	-0.101461327330433	0.831221869345166	0.960444904168444
Merged-chr14-18297613-2	chr14	18297113	18298113	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009455, intron 3 of 5)	Lx5c|LINE|L1	26477.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	2.26339793106486	2.15883387247141	2.48466440806928	2.19935080689387	2.02384587723734	2.10659365222186	-1.42887056582934	0.124335219003961	1
Merged-chr4-89486102-4	chr4	89485610	89486610	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-175078.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.09847409755935	3.37596726037968	3.58794793591736	3.07342110795468	2.86794318479834	3.3545037201571	-1.07159027244335	0.128701107340105	0.479799601167289
Merged-chr8-95853505-4	chr8	95853009	95854009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172758)	promoter-TSS (NM_172758)	-18.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	7.45162061270763	7.95188943371325	7.25649970225392	7.32556743807968	7.69008571196454	7.395418738487	-0.163023012140851	0.569377367605644	0.8688875602138
Merged-chr13-46906141-4	chr13	46905653	46906653	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	23565.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	5.09708460811867	5.13107950620181	5.37444584742137	5.37420359608832	5.54702378268724	5.52294445027875	0.571606249701221	0.0981958305447026	0.417772982783845
Merged-chr4-116074293-2	chr4	116073793	116074793	+	972.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153521)	promoter-TSS (NM_153521)	777.0	NM_025641	66576.0	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	5.91221025712604	5.77780365424796	5.72600383965855	6.23296726249964	6.15345054400471	5.73330692637435	0.44981068952594	0.157838539810934	0.529402983738641
Merged-chr4-132008846-4	chr4	132008359	132009359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	B3A|SINE|B2	40219.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	8.48257739621874	8.26232563518934	8.0696327089616	8.4946734356801	8.70164223732242	8.08823191432259	0.241709061455754	0.34808113921605	0.735982909356061
Merged-chr9-20898009-2	chr9	20897509	20898509	+	916.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 3 of 10)	intron (NM_016876, intron 3 of 10)	581.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	6.45786835828806	6.31649597744979	6.45282797274503	6.98714419540066	6.67123737142929	6.71714950245407	0.622600837631283	0.0205576120509284	0.164328722271448
Merged-chr5-38260486-4	chr5	38259950	38260950	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356960, exon 1 of 5)	exon (NM_001356960, exon 1 of 5)	265.0	NM_025480	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	7.43178325526854	7.48748328011208	7.28272176987642	8.1564967672587	8.34778599728847	8.11868156376889	1.15515596371852	2.61838209526967e-07	1.66567536225687e-05
Merged-chr2-71873922-7	chr2	71873421	71874421	+	984.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360002)	promoter-TSS (NM_001360002)	697.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	5.77140801080001	5.91259914331969	5.35813091203041	6.24720352669815	6.44696226392313	5.98011202986738	0.918588526464853	0.00719757268709928	0.079765886524955
Merged-chr19-4839390-4	chr19	4838891	4839891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207268)	promoter-TSS (NM_207268)	25.0	NM_207268	399599.0	Mm.444704	NM_207268	ENSMUSG00000067872	Ccdc87	4931419P11Rik	coiled-coil domain containing 87	protein-coding	4.93108804737593	5.0951944225248	5.24012893263927	4.82662191197537	4.59583582052709	4.94754464528348	-0.665930987860791	0.0926257153596898	0.405428749271387
Merged-chr5-115513899-4	chr5	115513367	115514367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	7191.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	8.50428874733402	8.51067885752622	8.15659942806312	7.84459925043314	7.93929557738365	7.61327393666205	-0.836665961858511	0.000391381294140602	0.00864110081443132
Merged-chr12-110765554-2	chr12	110765054	110766054	+	714.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	27622.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	6.36495726495302	6.04206465275258	6.27070553635299	6.28809121597082	5.98792399893977	6.05540003620648	-0.194726997188057	0.51479558289643	0.843210843733192
Merged-chr3-152400772-2	chr3	152400272	152401272	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	4088.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	3.92768937977746	4.01106143246593	4.36113875097321	3.81040907862612	3.89469764442913	4.04417236912217	-0.558690584390627	0.279861345224945	0.677566338635538
Merged-chr2-172438639-2	chr2	172438139	172439139	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1939.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	3.48490011725832	3.39655182373536	3.49272666520405	3.27802375905729	3.41212194058045	3.50972412671469	-0.213865992689676	0.716493149483796	0.926635190845863
Merged-chr18-60764105-3	chr18	60763677	60764677	+	740.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-10419.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	5.67412024576095	5.55390527362108	5.63091414056929	5.69416188207891	5.37737181740475	5.4653420753562	-0.193453917553969	0.557633633749201	0.864290289364679
Merged-chr1-86344008-2	chr1	86343508	86344508	+	555.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010880)	TTS (NM_010880)	7277.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	3.72141094780504	3.72658776260195	3.89707674099501	3.98609580246069	3.74415146644396	3.54202116668747	-0.0142585212417035	0.97946607143902	0.995242497433086
Merged-chr7-44869929-4	chr7	44869447	44870447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133949)	promoter-TSS (NM_133949)	-159.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	6.66972863057988	6.10513662468681	6.47993692588083	6.47314466239967	6.09057594932329	6.6061224816125	-0.0646892698188283	0.840784574210038	0.962819298477451
Merged-chr9-120064795-3	chr9	120064275	120065275	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	3521.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	4.65560400223377	4.3101847310769	4.36992929572916	3.71404412926241	3.47501809363102	3.86950284054144	-2.42648330806457	1.03972513157879e-05	0.000414733694862936
Merged-chr11-17953891-4	chr11	17953392	17954392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	-17.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	5.51217785056956	5.88608123285223	5.99320008752065	5.57561630027342	5.30393431367213	5.35315092425984	-0.73101087468424	0.0357330082357118	0.232370398850766
Merged-chr19-41090058-2	chr19	41089558	41090558	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 18 of 20)	intron (NM_011904, intron 18 of 20)	-12945.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	2.7361007694071	2.65819103095264	3.10858667742132	2.64777463577835	2.48048009443231	2.84599957401003	-0.958071178146821	0.229033361245848	0.624505437231108
Merged-chr4-86575022-1	chr4	86574522	86575522	+	696.0	f0_balb.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	-651.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	5.49930659567633	5.58225754251046	5.03997512578974	5.60899531798283	5.6934311348927	5.51607115944877	0.381772692748363	0.287377255868994	0.684650023087306
Merged-chr11-106392001-4	chr11	106391492	106392492	+	996.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9211.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	2.50780972778848	2.24525415787696	2.48930474227211	2.16513777935116	2.37927450919099	2.30636656950839	-0.840334361763244	0.340946731644329	1
Merged-chr8-117295022-4	chr8	117294520	117295520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	38001.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.75561829652093	4.83156366530457	4.92264787110007	4.53163720625115	4.69291354164966	4.88196223345537	-0.300943552916834	0.456524835251905	0.811680471504093
Merged-chr4-37412971-4	chr4	37412470	37413470	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163567.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	3.4669861799732	3.42606490955551	3.49710573047321	3.18737073686151	3.28075336624703	3.35006153640714	-0.748333264313574	0.213852934685901	0.60695339941084
Merged-chr2-6380101-4	chr2	6379597	6380597	+	916.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	27361.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.98701152625998	3.97393532916806	4.02837394703132	3.77398773219524	3.93480152546376	4.00208358782281	-0.273345445221168	0.58560162263358	0.875058182172525
Merged-chr11-69055925-2	chr11	69055425	69056425	+	986.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3850.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	3.1201502329908	3.15779076692231	3.14883378796294	3.10810327894133	3.03667445103853	3.68491571194803	0.650064536606287	0.344300354742313	0.732980075743821
Merged-chr13-100453860-3	chr13	100453347	100454347	+	779.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-983.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.33413721573261	3.93290183190279	4.61909045185335	4.5629233644738	4.91774694249756	5.06325843934333	1.32304645452752	0.00692868450627855	0.0775207718701661
Merged-chr10-68127343-4	chr10	68126841	68127841	+	869.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 6 of 9)	intron (NM_023598, intron 6 of 9)	147771.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.59151143269219	5.59295025475248	5.19353757828902	5.81324095067721	5.58517140731998	5.58082400325871	0.334187555152429	0.332167286914403	0.723387053255178
Merged-chr6-131281667-3	chr6	131281151	131282151	+	907.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	11593.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	4.07050517390892	4.20473759552757	4.54268082163038	4.01630270254281	4.36391404799673	4.78387109434226	0.35755240807708	0.492522474044356	0.831122310740083
Merged-chr12-81927978-3	chr12	81927462	81928462	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 6 of 35)	intron (NM_018814, intron 6 of 35)	67932.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	2.63568191535025	2.56305995109341	2.87290480238914	2.67660067474619	2.57584877257539	2.64472364863636	-0.328484100687696	0.666269031802345	1
Merged-chr13-99185879-2	chr13	99185379	99186379	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1056.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.76080459308497	6.94114206386309	6.5184908174359	7.34921221691527	7.6691173475174	7.0893876310369	0.965431452390768	0.000709186808742219	0.0138002843736722
Merged-chr2-158145607-4	chr2	158145099	158146099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	793.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	8.83295948392791	9.0489268367204	8.67616084353434	8.83686181745784	9.20715122795232	8.3476113064781	-0.0150435927371299	0.956707729147167	0.989887454023164
Merged-chr17-23924832-4	chr17	23924340	23925340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7382.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	5.94472599991197	6.02386640573756	6.04535772397545	6.08452256528122	6.0611784340517	6.30969801668293	0.248327101442413	0.391920342388589	0.770782330002482
Merged-chr6-50381783-4	chr6	50381262	50382262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	MER5B|DNA|hAT-Charlie	1075.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	6.07495192341465	6.33043119204286	6.25694616928993	6.65885006681844	6.66916362340107	6.49034655543654	0.633447987932424	0.0207566688378768	0.165448884056141
Merged-chr8-72493534-2	chr8	72493066	72494066	+	828.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-952.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	6.93600416492117	7.20442799683846	6.98191948546245	7.28735395968009	7.40714089905812	6.79844857728084	0.230054299043488	0.410099376982728	0.783116615634315
Merged-chr16-55822011-7	chr16	55821439	55822439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 1 of 12)	exon (NM_001159394, exon 1 of 12)	199.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	8.66326931711455	8.82962181111858	8.41998010162865	8.26237965419322	8.44413158797821	8.241748614284	-0.459435268050186	0.0404221581349824	0.250517423960645
Merged-chr8-23257121-4	chr8	23256646	23257646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042484)	promoter-TSS (NM_001042484)	-66.0	NM_001042484	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	6.84893513961598	6.86265206947208	7.05495513886189	6.84771137592774	6.77077682219419	6.8856095164185	-0.13498281521713	0.586774101442288	0.875655897836385
Merged-chr10-79884690-2	chr10	79884190	79885190	+	730.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1622.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	3.90769107149863	4.0114533374487	4.04788984133957	3.78971533682222	3.85558934909814	4.24639579231335	-0.0568817109611575	0.912772346652613	0.980454939330149
Merged-chr5-73637931-3	chr5	73637458	73638458	+	867.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011890, intron 5 of 5)	intron (NM_011890, intron 5 of 5)	-5537.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	3.63680383710491	3.54717608351657	3.4928186322948	3.70923316190655	3.66159266045947	3.82561064792593	0.57249063049687	0.298985728602058	0.695809701710812
Merged-chr17-25874883-4	chr17	25874410	25875410	+	972.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	-590.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	6.76553539374211	6.91310943603352	6.68157690040911	6.99523577910131	7.27493714595124	6.82138678324516	0.398859646938137	0.136786062175444	0.494082942415973
Merged-chr3-95631063-4	chr3	95630549	95631549	+	853.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001026212)	TTS (NM_001026212)	6069.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.38718769086081	6.44645913901875	6.27261542487022	6.43453054747333	6.56464796603959	6.59135041373008	0.250326255971011	0.348607324775604	0.736470744394742
Merged-chr15-96697730-2	chr15	96697230	96698230	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	1998.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.73725865237754	4.67971122188125	4.78636513750222	5.20733431521548	5.07825226636719	4.96612137486845	0.793231978985033	0.0372350503880581	0.238109657126596
Merged-chr1-152589708-2	chr1	152589208	152590208	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	35509.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.41184929634331	5.18006362138661	4.96437658035958	5.56113318381569	5.45874716170106	5.55781488526208	0.612479535254258	0.0869944267103541	0.390918197208789
Merged-chr2-11500755-4	chr2	11500261	11501261	+	889.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1329.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.25130730715834	6.69270746791638	5.97712816737621	6.26258788302574	6.21229771841675	5.40347043336592	-0.539287393674059	0.172276619004916	0.550849140713641
Merged-chr1-131394680-3	chr1	131394170	131395170	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-115107.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.12385459765243	4.69164617934017	4.94250537618059	5.00755782969937	5.08114307887197	5.41622786728944	0.508085756230151	0.204035433264555	0.594262340917239
Merged-chr5-123436334-4	chr5	123435802	123436802	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	41504.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	4.58143338897677	4.61193196950981	4.48213254068411	4.81738325994347	4.55653500771235	4.67547966550709	0.286836023191747	0.4908574648032	0.830181469396006
Merged-chr4-105225801-4	chr4	105225305	105226305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 5 of 5)	L2c|LINE|L2	68458.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.36620860066389	6.57608785357819	6.20637586940273	6.61216071987857	6.96363375758998	6.5634159472472	0.533869332096655	0.0660611639765208	0.335458155264149
Merged-chr5-148540081-2	chr5	148539581	148540581	+	589.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	11592.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.57706365715185	4.57636914988708	4.45413645370895	4.73846926763735	4.73398491440172	4.80665410101376	0.511065421273432	0.209221262253213	0.600606107743886
Merged-chr7-110381773-3	chr7	110381271	110382271	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	160068.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.99631236347131	5.11141999394273	5.43333672359168	5.47700775582651	5.72774459478433	5.63287530005305	0.859791805521009	0.0151222740974578	0.13343522620374
Merged-chr11-115631161-4	chr11	115630662	115631662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2867.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	7.77681323898637	7.56260929098841	7.46751757102493	7.89148544680066	8.03178433283999	7.84986011302433	0.45408132066199	0.0473274405150275	0.27555955988905
Merged-chr3-116119465-2	chr3	116118965	116119965	+	736.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 5 of 8)	intron (NM_011693, intron 5 of 8)	10223.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.01958706607793	5.13050577799927	4.80389672763458	4.68076890310158	5.02673283225342	4.57247107630341	-0.457727371493642	0.275883382659486	0.673286537742498
Merged-chr8-70131325-4	chr8	70130841	70131841	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104434)	promoter-TSS (NR_104434)	14.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	6.52639772957814	6.27754450117729	6.52550098852104	7.00228911484757	6.55763627686723	6.7174351987514	0.518749245209733	0.0674666190802381	0.339692753263249
Merged-chr11-77410074-4	chr11	77409566	77410566	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-53847.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	5.11618794610437	4.96428860747473	5.41909294677253	5.09555781595979	5.27797738298205	5.39683653375566	0.186521296576926	0.618268864399399	0.889235055553648
Merged-chr2-118549799-4	chr2	118549304	118550304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-118.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.64285423123441	6.71843455328811	6.58271926884343	6.96885398779187	7.08717943323987	6.72675663733311	0.455860691479055	0.0798037817073949	0.373590494619515
Merged-chr1-171686695-4	chr1	171686190	171687190	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	4698.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	5.75233277637904	5.7068619964342	5.54473541944659	5.94440752961208	6.14760396656513	6.00045489294368	0.638330257199294	0.037117584914249	0.237758276023467
Merged-chr7-143474487-2	chr7	143473987	143474987	+	550.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042760)	promoter-TSS (NM_001042760)	-629.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	2.95130741820839	2.81062434459334	3.20863700822398	2.94510758323139	2.84332365567686	2.87878577076811	-0.499245326739018	0.481090946771624	0.824933692849553
Merged-chr18-10608885-1	chr18	10608385	10609385	+	596.0	f1_c57bl6.idr	intron (NM_001081222, intron 1 of 10)	RSINE1|SINE|B4	1467.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	4.88845383312281	4.86538156832323	4.99392769722747	4.69018828419061	5.13783091592956	4.76075880450495	-0.043858467232695	0.914102208279097	0.980894573251353
Merged-chr4-103123233-4	chr4	103122741	103123741	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3851.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	5.67578817293487	5.39466895176087	5.59950330088023	6.13703948669726	6.02167666910564	5.84965955974817	0.816353605089544	0.00997678122658646	0.100180302997093
Merged-chr1-153930515-2	chr1	153930015	153931015	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30586.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	2.90460882599092	2.88633264742963	2.85083944373125	2.88477433987892	2.68065708627437	3.3163898060572	0.47475689329955	0.527426023475733	0.849959198694232
Merged-chr1-24686955-1	chr1	24686455	24687455	+	594.0	f1_balb.idr	intron (NM_026719, intron 2 of 15)	intron (NM_026719, intron 2 of 15)	8037.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.93267524907762	5.92193351100631	5.55481110214342	5.78818200649769	5.80585945022125	5.83757585775938	-0.0326142988842073	0.917832598836796	0.981747877135909
Merged-chr15-97768428-2	chr15	97767928	97768928	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-762.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	4.49840536064356	4.21634681306523	4.50878694923518	3.66412755983837	3.64477297668462	3.8045902883261	-2.18968848637226	3.48565828301877e-05	0.00116902319392755
Merged-chr9-55511818-2	chr9	55511331	55512331	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_145615, intron 1 of 11)	CpG	412.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	8.35495594477312	8.71933174129852	7.94607212280694	8.25833234681186	8.18122784897235	7.57340293940747	-0.475409166964605	0.115896109392832	0.454538248037273
Merged-chr13-43789200-4	chr13	43788706	43789706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	4094.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.96409263708719	7.64585123589628	7.56435273376448	7.65599880237609	7.77057864308725	7.5201182312508	-0.120991908040342	0.618073408968379	0.889107622589439
Merged-chr11-116430476-2	chr11	116429988	116430988	+	812.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3606.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	3.86100216476746	3.91371737838274	3.71328399331832	4.24788379064883	4.40731960731563	4.00625652160303	1.17587801866486	0.0223386850625128	0.173683171994166
Merged-chr5-92675897-2	chr5	92675397	92676397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-626.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	4.07231440945368	3.5397891304152	4.08942721685698	3.61739594879737	3.83167030121253	3.92825204482479	-0.388183086783343	0.498890532583998	0.83416518313324
Merged-chr7-97738155-4	chr7	97737682	97738682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175105)	promoter-TSS (NM_175105)	65.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	4.01208192155107	3.7572478905148	3.93634125644255	3.94549058578597	4.0446252082402	3.62916429914016	-0.0311950098121631	0.954114210693591	0.989495550016789
Merged-chr1-91252698-4	chr1	91252284	91253284	+	810.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	2218.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	5.61384970513242	5.41802102285968	5.51176614702144	5.37700816657821	5.38847939039686	5.0098730970235	-0.454689455944945	0.200368043778371	0.589326514204756
Merged-chr10-60282252-4	chr10	60281789	60282789	+	945.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2172.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	8.18015270440758	8.34806460268267	8.14926504520344	8.20402800883018	8.77390515367165	8.07682766178547	0.235059120202326	0.375927608462468	0.758951282467405
Merged-chr11-30772378-4	chr11	30771882	30772882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	CpG	607.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	8.1289580483681	8.35793508772695	8.21943344986321	8.03855893435587	8.00621030879669	8.06705247313457	-0.287784395830934	0.172162830903822	0.550749681454482
Merged-chr10-125321661-4	chr10	125321170	125322170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	7293.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.87492360802475	7.08514859975376	6.79126740122167	6.70113444063732	7.1588269329706	6.80334208808999	-0.023325577885574	0.932726195094368	0.985289660163416
Merged-chr16-94313446-4	chr16	94312938	94313938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139145, intron 1 of 10)	CpG	125.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	8.85122112915236	9.01438200434093	8.19205875611769	8.76984914389134	8.8506945326519	8.24732355707425	-0.116881304333762	0.692342730689439	0.918648603655029
Merged-chr13-52603444-4	chr13	52602953	52603953	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6571.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.75982683865039	7.64498357869114	7.40533615951962	7.00096613812343	7.04161178336001	6.77572425223555	-0.988514273794643	7.81878890169972e-05	0.00230214361971914
Merged-chr4-155066152-4	chr4	155065659	155066659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-871.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	6.60945619732944	6.72623147767995	6.82418117719093	7.0482712286195	6.94666427563793	6.6090730421117	0.26685948818195	0.319911769683709	0.713801665327798
Merged-chr2-129622095-4	chr2	129621598	129622598	+	825.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	26636.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.5052430337439	4.24794114756574	4.70758020188726	4.75510995762987	4.67861429422679	4.65758698545759	0.507696338596871	0.240850213766684	0.637851764445026
Merged-chr3-27677717-4	chr3	27677211	27678211	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	32741.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	5.72246503130799	5.53051061275808	5.28088772012129	5.28026480959178	5.33419506818167	5.2446406779515	-0.474738007125735	0.174474531604156	0.553729377745007
Merged-chr2-6258656-4	chr2	6258163	6259163	+	963.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45669.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	6.66031494894722	6.80977372547134	6.5625595203355	6.38731400542969	6.70573050360121	6.51546018456985	-0.218195048984945	0.422573763591002	0.79138410692668
Merged-chr2-153060309-4	chr2	153059801	153060801	+	855.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5654.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.97589346169401	3.93616743347851	4.04405916151051	4.85098964289109	4.74608999012401	5.04209638480919	2.35397653624293	4.02335349490466e-07	2.43295928491298e-05
Merged-chr11-79083730-3	chr11	79083232	79084232	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-23896.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.92631087738888	4.746292894338	4.91242463418268	4.80627141026975	4.59588596430284	4.86954078597421	-0.247160318538235	0.535619573348329	0.853642733229286
Merged-chr14-21749680-2	chr14	21749180	21750180	+	864.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	-851.0	NM_026283	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	3.10019968749288	2.99043812715593	3.12537517901723	3.32905287933897	3.21170798397823	3.31234296457659	0.912700894306304	0.15208749668119	0.520007249500677
Merged-chr9-95582285-3	chr9	95581793	95582793	+	757.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22476.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	3.80009221908011	3.79140993397166	3.53852135952364	3.6045820019071	3.7750240591423	3.72048938026655	-0.0622937055441177	0.910061799016947	0.979769461916496
Merged-chr6-28730029-2	chr6	28729529	28730529	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 14 of 23)	T-rich|Low_complexity|Low_complexity	101718.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	2.51942504974274	2.54592155419772	2.9491296746477	2.49789789550932	2.43659848093437	2.41693168716966	-1.34094967105388	0.107157139091698	1
Merged-chr12-4314012-2	chr12	4313512	4314512	+	875.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 8 of 22)	MTC|LTR|ERVL-MaLR	79985.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	2.24534172249077	2.17677728714741	2.38474901804379	2.31287720214473	2.04350575698127	2.19837627022398	-0.56950257290411	0.524475192448367	1
Merged-chr18-62190196-2	chr18	62189696	62190696	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10096.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.88698868094033	6.76903126589857	6.53739644934691	7.079076687209	7.22411648798527	6.92410464261378	0.522464714649965	0.0466515772504625	0.273328668065552
Merged-chr9-40814228-4	chr9	40813721	40814721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12948.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.20023822610547	5.09148576600537	4.92601076299395	6.43929399941803	6.49071937398477	5.64631037417713	2.14489023212373	2.68109923034107e-08	2.21538137793664e-06
Merged-chr4-141015473-4	chr4	141014976	141015976	+	649.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161799, intron 8 of 8)	intron (NM_001161799, intron 8 of 8)	4839.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	4.56601500876892	4.63196621175968	4.42510012587165	4.47062774231743	4.48415314745648	4.20901267941139	-0.366623008394129	0.407868004883194	0.781926100186554
Merged-chr5-117133583-4	chr5	117133103	117134103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183306)	promoter-TSS (NM_183306)	15.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	7.16288963129038	7.45343013478037	7.42236804685733	7.25454389869206	7.31945768348624	7.14988997495272	-0.153731756933926	0.524378734539975	0.848666791348536
Merged-chr18-38248034-2	chr18	38247534	38248534	+	692.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015475, intron 1 of 3)	L2c|LINE|L2	2164.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	5.42062665039676	5.68648298734396	5.77078924004622	5.35219829843298	5.34727879804266	5.70977732411947	-0.302037337710307	0.383725618360507	0.764987331749031
Merged-chr10-78481100-4	chr10	78480613	78481613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16165.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.46346840226518	6.31446669059291	6.54025616702685	6.33709291284422	6.28745855359738	6.16090722772247	-0.278415298341916	0.312269085660421	0.707056878336701
Merged-chr18-12729017-4	chr18	12728510	12729510	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 9 of 13)	intron (NM_028341, intron 9 of 13)	-12345.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	3.56058598535099	3.47332181177187	3.71295994804882	4.14932328376626	3.87025282376407	3.98496757796189	1.40166558290546	0.00982884670832633	0.0992763628194242
Merged-chr14-118662218-3	chr14	118661725	118662725	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	14706.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	2.765063610626	2.78487250239513	2.83647329820803	2.89766575962665	2.64471117736193	3.02654383091203	0.326893291866472	0.654636283836426	0.903872559164033
Merged-chr10-88826806-4	chr10	88826302	88827302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175158)	promoter-TSS (NM_175158)	12.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	5.64671089496801	5.67790634469693	6.10815852612893	5.68303983813809	5.52847668341914	5.46230162265776	-0.463327495222531	0.172304144722137	0.550854238830429
Merged-chr5-32192241-4	chr5	32191750	32192750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40458.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	2.54860552865536	2.57432943183544	2.57889154178279	2.75210463630257	2.40668236133735	2.71602471317485	0.357809471579776	0.650915766102176	1
Merged-chr4-134853972-4	chr4	134853464	134854464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-619.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	8.2966638343417	8.66355643315931	8.06405769163038	8.20680864377075	8.53682370083005	7.94022130760943	-0.157317843990995	0.56606140780271	0.867147258141059
Merged-chr2-165062230-4	chr2	165061736	165062736	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	6600.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	5.74102597748706	5.19997206164715	5.06640313106215	6.40182062827773	6.62847552332066	5.7549328450989	1.65248337850112	5.45958945827769e-05	0.00169761404949316
Merged-chr3-144701925-3	chr3	144701412	144702412	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	18423.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.23873628772177	5.54166149207775	5.84155464086919	5.87459650031123	5.70112243820161	5.94791621049006	0.527720491047766	0.128388790328407	0.479272071137105
Merged-chr10-60398620-4	chr10	60398122	60399122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 28 of 68)	intron (NM_001252635, intron 28 of 68)	-1104.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	5.09054095454624	5.03706655788315	4.926061902091	4.69550240541807	4.86746433553082	5.09462179478091	-0.296636831732805	0.444678401527941	0.804462724072661
Merged-chr2-173020052-4	chr2	173019570	173020570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	4.37413465857054	4.08913140086668	4.08446141203518	4.35582322413634	4.4064400075334	4.10420639551619	0.293325777131535	0.541533901329851	0.856856498945272
Merged-chr11-3186806-4	chr11	3186324	3187324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 3 of 32)	intron (NM_030207, intron 3 of 32)	6639.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.12500699637444	6.75800461691076	6.94658791877876	6.30966720156323	6.19968951625751	7.35113832033833	0.135830266907046	0.840159384427323	0.962819298477451
Merged-chr11-69766145-9	chr11	69765655	69766655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	CpG	243.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	8.73994974474707	8.66242776112724	8.4666386539673	8.65308721249951	8.69070729136048	8.37593451731389	-0.0636898842067693	0.771104830266892	0.943576844936255
Merged-chr2-27680715-4	chr2	27680224	27681224	+	906.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3523.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.00022125849523	7.00445863180805	7.02247563897764	6.7700001483734	6.82310864362456	6.93236555698387	-0.259475893666285	0.283478293087805	0.681376161050487
Merged-chr12-111166930-2	chr12	111166430	111167430	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286122, intron 1 of 9)	CpG	560.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	7.39962081526351	7.31216867857599	6.82887430358318	7.28159901205097	7.15520755514395	6.77314494581786	-0.17729092579957	0.541524643033352	0.856856498945272
Merged-chr7-125603003-2	chr7	125602503	125603503	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021887)	promoter-TSS (NM_021887)	-426.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.07270297364107	3.97377552640118	3.98410150927454	4.69481347725262	4.73625074999063	4.53122347096652	1.7328739666141	0.000160256439548567	0.00418932385232709
Merged-chr4-48046441-1	chr4	48045941	48046941	+	543.0	f0_c57.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1136.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	3.25783513719237	3.22723400881884	3.22532088126565	3.43601809827806	3.11038981869998	3.11729525262912	-0.0255739796113459	0.968187948339591	0.992692692971889
Merged-chr17-56298637-4	chr17	56298147	56299147	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029799, intron 1 of 2)	B2_Mm2|SINE|B2	1639.0	NM_029799	76920.0	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	3.05615768253997	3.22784302045514	2.98621809588679	3.31537720902757	3.08509812194943	3.29828869376222	0.568862930529285	0.389326885265997	0.769015431167891
Merged-chr15-99451923-2	chr15	99451423	99452423	+	790.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	5825.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	3.25894564763151	3.20906324372056	3.55974056599542	3.56757932514203	3.40134877009403	3.67946154562204	0.776150044136299	0.202597391407933	0.59252027125208
Merged-chr6-72431407-3	chr6	72430878	72431878	+	649.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019802)	TTS (NM_019802)	-7305.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	3.38939429211656	3.50457307678231	3.50368013873405	3.55772874929261	3.51923430810651	4.05240387041876	0.893907982035301	0.134183465329465	0.489826612459235
Merged-chr17-34117380-7	chr17	34116894	34117894	+	952.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 2 of 12)	B1_Mus1|SINE|Alu	2506.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	5.06712254365875	4.929902917847	5.48849852202283	5.47537708384752	5.79004461524075	5.60523477142422	0.911714494003418	0.0137079147576761	0.125051404848364
Merged-chr9-121302708-2	chr9	121302233	121303233	+	683.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B3A|SINE|B2	5231.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	2.98107517565009	2.90256855312554	2.90062568918941	2.88612674594498	2.99667984591917	3.20430885685445	0.470720427390471	0.492893901189778	0.831208279358962
Merged-chr13-102849278-3	chr13	102848771	102849771	+	970.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 5 of 28)	MLT1E3|LTR|ERVL-MaLR	89016.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.42945115812637	3.65755532590271	3.72618414075789	3.48427450797641	3.36031364425129	3.93409585341749	0.000952692365358815	0.998751534976115	0.999777890446572
Merged-chr8-71882010-4	chr8	71881487	71882487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145624)	promoter-TSS (NM_145624)	-81.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	6.79880107329498	7.07726966297812	6.72323510474074	6.97833590541033	7.08513448818614	6.91986367508285	0.179096876528889	0.488347496597883	0.829104641846902
Merged-chr4-86690392-4	chr4	86689895	86690895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20336.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.46143742479333	7.60973548846835	7.07264891783348	6.54112167607209	6.59788893386407	6.88124656899206	-1.11825350117785	4.76745621614694e-05	0.00151756119676035
Merged-chr15-27681597-4	chr15	27681101	27682101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242423)	promoter-TSS (NM_001242423)	-59.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.81549447601018	7.88292493042772	7.6068372286283	7.66990931395537	7.70427317653001	7.17960939387841	-0.329675678640076	0.201686875363527	0.591205577582202
Merged-chr13-67723968-3	chr13	67723478	67724478	+	943.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5195.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	6.83981715622766	7.24444798818276	7.10793435113633	7.24325815420519	7.43993027506416	6.67082276447746	0.142167728325219	0.639705369639279	0.898199312621371
Merged-chr19-3414482-4	chr19	3413975	3414975	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329667)	promoter-TSS (NM_001329667)	69.0	NM_001329667	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	3.11554839267924	2.65153632033072	2.92688472453437	2.9262689833986	2.67283759008783	2.8784682155904	-0.415007741450256	0.583536948397883	0.874062789752135
Merged-chr6-32718078-4	chr6	32717575	32718575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129883.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	2.99565651257998	2.62805661503258	2.81792235238037	3.02269089127984	2.7428812261686	3.07160048467672	0.608948095494354	0.416718454590717	0.787622868653108
Merged-chr11-97883682-4	chr11	97883183	97884183	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081435, intron 1 of 10)	CpG	471.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	6.00516927730439	6.36752433078599	6.56850489390182	6.58782564839354	6.61582787480241	6.59455806233392	0.445513532241797	0.127035543727633	0.476314670819392
Merged-chr17-64616430-4	chr17	64615933	64616933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	14784.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.981912614432	5.82823928513133	5.51285630313128	5.5947641782695	5.43589063589368	5.28454364128155	-0.64906988039835	0.058648160803075	0.313262046739136
Merged-chr4-41355112-2	chr4	41354612	41355612	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	3149.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	2.91269200969786	3.02295688558196	3.14829375981791	2.80261653103594	3.32365709408425	3.16323496747627	0.393497467945135	0.583311227018144	0.87400013033251
Merged-chr5-64852883-4	chr5	64852373	64853373	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	49350.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.6493636916439	4.51903801647833	4.89536523366767	5.07910683380804	4.89032271009775	4.65070274584228	0.466307065228395	0.264570579967688	0.66250631957347
Merged-chr10-17383162-4	chr10	17382653	17383653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-287371.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.82112035424104	3.9629325318618	3.90381051590825	3.81259889338434	3.7325479664648	3.82292979194389	-0.355003390139133	0.49073603786145	0.830165664658055
Merged-chr17-33033299-4	chr17	33032775	33033775	+	964.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028543, intron 1 of 3)	intron (NM_028543, intron 1 of 3)	106.0	NM_028543	73451.0	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding	4.81737949588392	4.89892190097195	4.46784296631539	4.56408612421935	4.63957520537986	4.6238304944825	-0.336532643272923	0.425889474419766	0.793463399937346
Merged-chr1-182935599-4	chr1	182935100	182936100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19188.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.86592188871056	4.7192164079923	4.60082905548387	4.62257752756688	4.64156915825505	4.58337666441107	-0.286581416848046	0.483331043111082	0.826150563582312
Merged-chr6-29274501-2	chr6	29274001	29275001	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	intron (NM_023516, intron 1 of 1)	1875.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.13471524210716	3.02596094443567	2.94344287987989	2.97256554173242	2.96379573555821	3.13453744717854	-0.0880898349908107	0.895616342833634	0.975665889379756
Merged-chr17-87282848-4	chr17	87282422	87283422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015506)	promoter-TSS (NR_015506)	36.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	8.7340261854177	8.63791348184085	8.51650185313957	8.30129737532249	8.42877176858318	8.5667609952997	-0.278357566511432	0.186188786532676	0.570748472952067
Merged-chr18-42260110-2	chr18	42259614	42260614	+	685.583374	f0_balb.idr|f1_c57bl6.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	1957.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	4.16219944427527	4.11491193547881	4.14523966440567	3.67306811113651	3.80119342919745	4.02939657794957	-0.928021728241342	0.0689452418689611	0.343589151711934
Merged-chr1-162546200-2	chr1	162545700	162546700	+	864.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_144877, exon 2 of 8)	exon (NM_144877, exon 2 of 8)	2145.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	3.18234082089747	3.12539871383534	3.39434539331829	2.87373209692924	2.94842606075222	3.46393088983049	-0.499062901347543	0.48466148367656	0.826994448591038
Merged-chr5-148550568-4	chr5	148550054	148551054	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1119.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.40551652503559	6.5582278977489	6.55844117077371	6.82969374937237	7.01809922146549	6.99390155227864	0.695537176079628	0.00644996103028686	0.0736703304609621
Merged-chr4-62847454-4	chr4	62846940	62847940	+	991.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118134.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	4.85805202046832	4.37540881231109	4.18631333350769	4.95213091471035	4.7106664647408	4.67977761935164	0.634565562296975	0.182194239378043	0.564913484504702
Merged-chr3-61363797-4	chr3	61363306	61364306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	-701.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	7.03321434251808	7.37228159504706	7.37298440706344	7.2295789229247	7.55069463293791	7.40904314738293	0.207179164771661	0.413865302060388	0.785390988041999
Merged-chr6-148989693-4	chr6	148989203	148990203	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43233.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	3.20978770967413	3.1593656639802	3.61401949401665	3.36831198036593	3.36292711097803	3.25853742210791	-0.00715712053146442	0.991040192896437	0.998137907554386
Merged-chr1-133661903-3	chr1	133661368	133662368	+	811.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	-469.0	NM_001276767	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	6.86365918014578	7.04996445251755	6.60115694412786	6.93662123993136	7.1267792374257	6.43070483123083	0.0280127615531267	0.927256249872871	0.983584626679457
Merged-chr5-43871528-1	chr5	43871028	43872028	+	576.0	f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	2719.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.44611239792318	6.65014892820311	7.03836816952367	7.03576679789567	7.00535941613422	7.01985619721724	0.458134276558028	0.0988415111015383	0.419333642002316
Merged-chr12-38863609-4	chr12	38863100	38864100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	79889.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.81526676434768	5.52466487770067	5.66033398361803	5.51050740783693	5.41258908778195	5.8221035649709	-0.171227452158684	0.6130923958155	0.887002800601883
Merged-chr9-118695545-2	chr9	118695045	118696045	+	800.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	MLT2D|LTR|ERVL	-16147.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.38375425212323	3.23901507291	3.56628624533066	3.23873675060683	2.97106966997335	3.53592474967117	-0.538952384414841	0.422243685382998	0.791093681287682
Merged-chr16-78215981-3	chr16	78215488	78216488	+	906.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	39466.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.51898460635304	4.31921086439467	4.16408005878076	4.18383027235292	4.39130052344393	4.54192208793604	0.0689724915191921	0.882514551708316	0.973184220613163
Merged-chr18-39246462-5	chr18	39245938	39246938	+	568.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 16 of 21)	intron (NM_001361073, intron 16 of 21)	240807.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.55679905448135	3.53591579404404	3.40597995139957	3.2550052939075	3.41115307820679	3.58493605450662	-0.319024487482293	0.592334649441247	0.878003422897225
Merged-chr7-45459458-4	chr7	45458958	45459958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010240, intron 1 of 3)	intron (NM_010240, intron 1 of 3)	428.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	7.03500437658976	6.70060267535587	7.04219081570532	7.05548196150589	7.08699118333221	7.16213145619845	0.258424627379249	0.309210882968869	0.704802606494279
Merged-chr4-155217583-4	chr4	155217078	155218078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	4957.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.6619504173122	4.6484828603468	4.32764797807752	4.97425926714378	4.58809915269936	4.39837944371276	0.280314869885862	0.54140124558859	0.85683609213704
Merged-chr18-5603683-4	chr18	5603178	5604178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	11031.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.88124984916261	4.76500755540804	4.84432290074065	5.24304064166485	4.8218071490723	5.088465229845	0.494192566441732	0.208815946151983	0.599938875382706
Merged-chr19-43753212-8	chr19	43752707	43753707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144874)	promoter-TSS (NM_144874)	184.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	8.12950576126094	8.17379105005208	7.90626797605975	8.21319250398159	8.23303689215484	8.06189345485403	0.133010426976046	0.540865469188658	0.856572781885228
Merged-chr11-70812651-6	chr11	70812162	70813162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-101.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	7.4430028423608	7.24146928840165	7.23941304095558	7.77294047014463	7.70994239188988	7.57769524954264	0.552338454269669	0.0165410112554093	0.14230195042805
Merged-chr13-37432914-3	chr13	37432438	37433438	+	814.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87593.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.4551596734497	4.11845398629291	4.23680309310027	4.27806288702544	4.34430445690916	4.06109160022047	-0.102694944856752	0.830181366927821	0.960219727001139
Merged-chr5-92353757-4	chr5	92353273	92354273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-4884.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	7.78914562702426	7.70135035615122	7.36627632317684	7.78933430903381	8.02521487099212	7.69098773594039	0.301163501438351	0.224202406173736	0.619020931509579
Merged-chr7-141465273-2	chr7	141464773	141465773	+	661.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001025103, exon 7 of 10)	exon (NM_001025103, exon 7 of 10)	-1369.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	3.32772825554397	2.90430459980645	3.38789207204033	2.81966690759512	2.65512645587231	3.07935820052261	-1.72973340341021	0.0252271096563253	0.188046735494059
Merged-chr4-133118307-4	chr4	133117811	133118811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12322.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.05857982852149	5.39861175984382	5.67058669856758	6.2376069097427	5.79769506702436	6.40491283419875	0.732563077270985	0.0470034200266818	0.274489996214041
Merged-chr1-36307705-4	chr1	36307186	36308186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-47.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	7.43851815144552	7.43820329344096	7.21061639865473	7.1758798835212	7.00657422823486	6.99501216681336	-0.464181065968897	0.0535716192379584	0.29681126687492
Merged-chr17-25137252-2	chr17	25136706	25137706	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	575.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.56837501388034	4.33942620183503	4.70663659298507	5.2562007339588	5.53559376444869	5.11235520095922	1.74090237082716	1.72093747244712e-05	0.000641558087846684
Merged-chr17-69156809-4	chr17	69156352	69157352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_013813, exon 1 of 22)	5' UTR (NM_013813, exon 1 of 22)	108.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	7.50859469024396	7.64925114738613	7.60933905877097	7.75310002251806	7.36407749046194	7.18743846778732	-0.186254777690449	0.46945252214137	0.818977178978635
Merged-chr14-24487076-4	chr14	24486584	24487584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081247)	promoter-TSS (NM_001081247)	-26.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	5.51888021986429	5.61832922018865	5.65665988628192	5.73363622838956	5.65282704019857	5.52274316869291	0.0897141670058332	0.778332292518272	0.945439632982223
Merged-chr7-46548356-2	chr7	46547856	46548856	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	B4A|SINE|B4	91451.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	3.08486568396488	3.19575390938339	3.30075500066086	3.16727022655987	2.79919366931262	3.14890461248058	-0.660034049722839	0.339647660293971	0.729326516586858
Merged-chr2-27324699-2	chr2	27324199	27325199	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-77396.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.32704323938988	3.15883387430267	3.41914956616855	3.09711866327229	2.70573115779276	3.10269725600418	-1.4771772202364	0.043622985844963	0.26245390679205
Merged-chr7-45509867-3	chr7	45509313	45510313	+	945.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163662, exon 2 of 13)	exon (NM_001163662, exon 2 of 13)	595.0	NM_008749	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	6.26770206218379	6.27814582374322	6.36774671973807	6.3609171621427	6.55793116773323	6.26978085745091	0.181134321262657	0.512318993063029	0.841860053306022
Merged-chr13-58446731-2	chr13	58446231	58447231	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43388.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.49207016768723	3.62057779830111	3.63232447333055	3.80245043654221	3.89398353913527	3.6490786912216	0.715414158097354	0.191850337111104	0.578684294521097
Merged-chr14-30869433-3	chr14	30868943	30869943	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-9814.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	3.6162537510324	3.29274026111385	3.37989420745895	3.21187875868237	3.04257608869411	3.16034764617895	-1.2549653183051	0.0515891731593066	0.289631733367491
Merged-chr8-128685704-4	chr8	128685295	128686295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010578, exon 1 of 16)	5' UTR (NM_010578, exon 1 of 16)	141.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	8.85737238058512	8.96376546293459	8.65464953593625	8.76135657105314	8.87829691245471	8.68000123936938	-0.0784246427207933	0.708740468521706	0.92375127577894
Merged-chr6-73211085-2	chr6	73210585	73211585	+	628.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	ORR1F|LTR|ERVL-MaLR	10546.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	2.95816045671919	3.06714083090829	3.0175542579081	3.24768978757516	3.16966496695964	3.26596017999812	0.926133913906017	0.153493494517863	0.522474399339019
Merged-chr4-103122805-3	chr4	103122307	103123307	+	836.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3417.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	5.82312507908061	5.59871946574113	5.85132110721814	6.24031683582992	6.29580789022535	5.98616678393745	0.7544772594735	0.0132562492438169	0.122327380179607
Merged-chr2-35333755-2	chr2	35333255	35334255	+	976.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	B1_Mur4|SINE|Alu	3254.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.38792483900398	4.27946120294696	4.68868092947665	4.10416761774723	4.02013782103561	4.23707708164682	-0.914438505146624	0.0544495038689887	0.29969005848873
Merged-chr3-61389657-3	chr3	61389163	61390163	+	670.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25156.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.31672933095434	3.52411236648801	3.26140982034996	3.1719920727293	3.26664292096726	3.55137889959852	-0.167949950613335	0.790128819746313	0.949368241827272
Merged-chr15-27709426-4	chr15	27708957	27709957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27915.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.47313645855477	5.4603329095426	5.60076518633271	5.34673982700177	5.27421908362875	5.28311122696906	-0.402671065544399	0.227224887809969	0.622375640490653
Merged-chr10-8342844-3	chr10	8342359	8343359	+	892.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	L2c|LINE|L2	175966.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.96155509245376	4.54211210868502	5.22077739480922	4.95597273533757	4.74730917534825	4.99939113441988	-0.0605923367285636	0.887569834234771	0.973836995667151
Merged-chr2-18694299-8	chr2	18693781	18694781	+	997.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4741.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	6.28912720321561	6.16379450107892	6.13682056817446	6.27993144714258	5.80365774506471	5.86825439031582	-0.338415041250529	0.277082452336529	0.674343034039447
Merged-chr15-36903526-3	chr15	36903027	36904027	+	782.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103875.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	4.12771703477757	4.49188452943821	4.33470709843217	4.32815475795309	4.41992225713078	4.2662720957306	0.0413469953318407	0.92867130218061	0.983841533343233
Merged-chr12-69130100-2	chr12	69129600	69130600	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29086.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	3.90181661015409	3.73426581518152	3.89037533003301	3.9150686033085	3.89727388703897	4.00753598392535	0.298089235422899	0.557626639951303	0.864290289364679
Merged-chr5-100663200-4	chr5	100662709	100663709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11047.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.80399400013585	5.46962396131041	5.16493539801045	5.82148507656375	5.66849208064322	5.53157067625142	0.302402753399265	0.405007485819863	0.779908884056912
Merged-chr8-43351163-4	chr8	43350662	43351662	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44153.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	2.71007443824291	2.70342073648952	2.93054401574144	2.69442980480391	2.92574138970079	2.82486072558441	0.210103442796306	0.773955250280349	0.944243108198106
Merged-chr5-25529778-4	chr5	25529262	25530262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027388)	promoter-TSS (NR_027388)	-256.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	8.13711456992083	8.35525306586743	8.2017865406765	8.28149020511315	8.20437829832476	8.03509680341363	-0.0773186293380926	0.720707771361583	0.928324696220711
Merged-chr11-118402915-2	chr11	118402415	118403415	+	678.075012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-956.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	6.30790181923989	6.6301475828568	6.67802321513341	6.64006046064226	7.0410138027717	6.604762433697	0.384482660643726	0.186926848419455	0.571769078346716
Merged-chr15-30606404-1	chr15	30605904	30606904	+	650.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-432722.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.23561764389609	3.50002132666622	3.29628351970377	3.32067280861154	3.24598177402851	3.31066560655226	-0.245781244319125	0.689562287467321	0.917397716197234
Merged-chr17-33779496-4	chr17	33778973	33779973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2102.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	6.31118786004418	5.94029882398122	5.94989092881853	5.38943128634389	5.07636844873427	5.69276797196259	-1.26215378930499	0.000401172877988211	0.00881224731563966
Merged-chr6-5050042-4	chr6	5049532	5050532	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 3 of 15)	CT-rich|Low_complexity|Low_complexity	143914.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.4893479879777	4.41607766541467	4.60244043160601	4.04047818430382	4.33900432834387	4.66749481666159	-0.343453050017454	0.469334143871328	0.818965197509603
Merged-chr5-140514117-4	chr5	140513615	140514615	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	B4A|SINE|B4	8506.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	3.4052566981144	3.0957902398175	3.43050796880533	3.47851619711177	3.12027076109461	3.1579884955934	-0.214079905231885	0.744591104264137	0.936032341688524
Merged-chr17-78688037-2	chr17	78687574	78688574	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011500, intron 3 of 17)	intron (NM_011500, intron 3 of 17)	48486.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	5.00981905243837	5.35001635044034	5.10565428980656	5.39308324210151	5.49457264241843	5.2395974723335	0.437502811065734	0.226702977442688	0.621655066802371
Merged-chr3-90628141-3	chr3	90627672	90628672	+	782.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15278.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	3.58168921470109	3.31492847921844	3.53805243895726	4.47021530683392	4.19410496023547	4.23725741860737	2.73527933958378	2.35551281876517e-06	0.000115360512433086
Merged-chr8-94857989-4	chr8	94857496	94858496	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009090, intron 2 of 8)	CpG-14378	546.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	7.29726398459431	7.4032540309583	6.77076225845914	7.39578968878736	7.25919422422898	6.72697109606966	-0.0419844887919528	0.892635745642264	0.975146620821922
Merged-chr2-31170486-4	chr2	31170002	31171002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 4 of 17)	intron (NM_178760, intron 4 of 17)	18186.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	4.89789587871611	4.64280573103521	4.88089116335076	4.79126192185564	4.74687144799965	5.29394406995405	0.323820354651165	0.442114678484446	0.8030797713791
Merged-chr19-12465513-3	chr19	12465038	12466038	+	845.464294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010821)	TTS (NM_010821)	4759.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	7.95880354278766	7.94574256674257	8.00026735558863	7.72024356414363	7.8751131997336	7.44499023645024	-0.379701189968073	0.10371050553211	0.42934834114604
Merged-chr5-112326776-3	chr5	112326267	112327267	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 1 of 13)	intron (NM_018783, intron 1 of 13)	398.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	7.65415376394765	7.82772629604847	7.58801816476657	7.6027606659497	7.74323908312083	7.44022578572039	-0.129444898272845	0.579574901401419	0.872571259966152
Merged-chr17-29010093-3	chr17	29009593	29010593	+	881.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2098.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	5.20062817361988	5.21283898382033	5.14156543066201	4.95261303563002	4.67524417012499	5.00113337586878	-0.677965158189368	0.0727936045647175	0.35446990120723
Merged-chr10-59885058-2	chr10	59884558	59885558	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	5467.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	2.97414938063395	2.98086975112314	3.12891569169241	3.01159156302254	2.69191038650414	3.02921302980275	-0.532771443759057	0.454740840759233	0.810532225390276
Merged-chr7-44837092-4	chr7	44836561	44837561	+	968.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 4 of 8)	intron (NM_001171024, intron 4 of 8)	773.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	5.4209131325162	5.33368116580394	5.43775230857084	5.53538004864525	5.47615690610257	5.90653094435918	0.465595021432005	0.173899909597327	0.553140727918843
Merged-chr2-4506637-2	chr2	4506137	4507137	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-53117.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.40552465939861	3.31860740484538	3.61602617628877	3.29349681445508	3.29722521798144	3.4270843490317	-0.419993072191968	0.486108079121277	0.827646803246881
Merged-chr11-69061117-4	chr11	69060625	69061625	+	932.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028005, exon 1 of 1)	3' UTR (NM_028005, exon 1 of 1)	1350.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	5.94188851442794	5.72320296892946	5.93837077536041	5.67702169972365	6.19543325593183	6.49821970642707	0.505255615966745	0.147270492076339	0.51213793055522
Merged-chr17-70967832-4	chr17	70967330	70968330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22686.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	8.29966344878096	7.96717113643396	7.9481094942948	8.32773548379972	8.47383425910709	8.05008600438423	0.303466316319042	0.210072996559167	0.602053038404652
Merged-chr1-133129381-4	chr1	133128880	133129880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1786.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	8.02031746754972	8.24162052179849	7.98281534782384	8.04164390403474	8.38452730782042	8.03131227454045	0.112161170551704	0.631940949384536	0.895372529098856
Merged-chr2-59345898-2	chr2	59345398	59346398	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	40784.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.52445084681663	4.81704192022667	4.85827508285574	4.69718060260684	4.42009084616608	4.6618721005587	-0.345906755601779	0.416867373785763	0.787707515339293
Merged-chr11-16638683-5	chr11	16638263	16639263	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113440.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	5.37787404933751	5.49903712590087	5.32845854018023	5.148112847008	5.18704516625826	5.32992714510614	-0.381231945619777	0.267814348839127	0.664975925109882
Merged-chr4-126229516-2	chr4	126229016	126230016	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	26803.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	4.2796753191652	4.30586117277948	4.54976906491534	4.57974357708643	4.49904810428332	4.57591466113741	0.44463816809144	0.305252162055562	0.701486464326093
Merged-chr13-56182525-2	chr13	56182021	56183021	+	736.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3636.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	6.54866922126824	6.71546208333418	6.79775755619438	6.07963781345623	6.48365834577871	6.62941745176433	-0.437632710949255	0.135174077711515	0.491294119824757
Merged-chr6-116228971-4	chr6	116228479	116229479	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	20946.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	5.48299388594319	5.0585814116159	5.43637200697584	5.20985013869818	5.16695972746503	5.73056474960127	0.0920220450672474	0.813721092873322	0.955940138311315
Merged-chr12-21336391-3	chr12	21335883	21336883	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19991.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	6.3245963731375	6.2944366316064	6.64501359638925	5.75949778538443	5.75364141227321	5.58193190551535	-1.22887944678214	6.53960060678979e-05	0.0019779974092685
Merged-chr18-9790797-5	chr18	9790279	9791279	+	912.0633539999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	L1_Mus2|LINE|L1	83131.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	5.254345115583	5.2502511137138	4.97649164652628	3.99981407499576	3.92426249998693	4.671885872306	-2.32551344854211	3.66766030678953e-06	0.000168700209401517
Merged-chr7-12881112-4	chr7	12880602	12881602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153802)	promoter-TSS (NM_153802)	-76.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	4.73239127469203	5.17987921066767	5.03333973733622	4.80510674147546	4.76004145918689	4.8861860412614	-0.403074592460414	0.314047620402312	0.708452606708298
Merged-chr17-35258289-5	chr17	35257712	35258712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4882.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	8.78684601098846	9.01473169910147	8.32764695381858	8.63361147835979	9.09172335820465	8.13229127987512	-0.0797757954169574	0.797999713679441	0.951930937621884
Merged-chr8-66332393-4	chr8	66331886	66332886	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	Lx8b|LINE|L1	-53915.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.07148398007322	3.61002885909391	4.11771566211681	4.02834518886033	3.8737823674701	4.35311439589759	0.421208144100615	0.445638178779102	0.805296706011004
Merged-chr13-111964356-2	chr13	111963856	111964856	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96420.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.04960576875843	2.94058691451623	3.00128274275367	2.99772588854736	2.77395141833673	2.95395081869868	-0.430802686372103	0.532876718577271	0.852011692079098
Merged-chr2-163660224-3	chr2	163659707	163660707	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	1749.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.17121184933658	4.13547933483961	4.08924375268507	4.30302073569961	4.40949980936995	4.34335540145392	0.602087740705899	0.186616780260921	0.571305862532512
Merged-chr3-103744375-2	chr3	103743801	103744801	+	949.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NR_125731)	TTS (NR_125731)	-6300.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.8740021750399	3.68206843124123	3.67385080155519	3.82696076818933	3.73187409819774	4.08653899414436	0.420145940484432	0.43639143191183	0.799472869647494
Merged-chr8-31148985-4	chr8	31148458	31149458	+	807.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	4.92997826089269	5.28236872576061	5.42326424383299	5.46760280367581	5.538997804789	5.62257567347503	0.632579167733981	0.0778742533702049	0.368488976881898
Merged-chr7-19272247-4	chr7	19271781	19272781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	-427.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	7.14951097012991	6.73214376753329	7.23770844359625	7.39104904031681	7.38675860943612	7.43525073088172	0.526279470854612	0.0426562640196991	0.259003756290954
Merged-chr2-46443311-4	chr2	46442811	46443811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	746706.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.3639638834461	6.76755145998745	6.7439691936695	6.65674795433346	6.52117396138217	6.46973441230504	-0.130785299019053	0.640106158180989	0.898316174176291
Merged-chr10-86887685-2	chr10	86887185	86888185	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108680.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.77898976458991	5.14121088683435	5.71292989375593	5.27263586431338	5.07851000554477	5.59798564921754	-0.478387743881797	0.227207736675916	0.622362358143648
Merged-chr6-97279508-5	chr6	97278975	97279975	+	886.679077	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-26695.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.26885793383346	4.00650115172744	3.96617964941076	4.0662845024384	4.00790172995022	4.08531397940333	-0.122762222561519	0.802883563355211	0.953400450869743
Merged-chr3-121602267-4	chr3	121601783	121602783	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41202.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	4.29799249349063	4.46250903949638	4.68708181057254	4.85581258145574	4.6314335690833	5.15449350887168	0.950531101097064	0.0314633907190251	0.21490771752985
Merged-chr1-146969012-2	chr1	146968512	146969512	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	471325.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	2.96006727279652	2.87968044509712	2.71977167505977	2.86405424184792	2.68807716300007	2.91921830917313	-0.191900338304508	0.792191945929504	0.949929758256028
Merged-chr2-174086533-4	chr2	174086023	174087023	+	954.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	9472.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.73636719343606	4.62274619532646	4.46855806913841	4.72684767783122	4.61235872669294	4.85677946156314	0.250809223355218	0.546056656246951	0.85849711034619
Merged-chr17-34288408-1	chr17	34287908	34288908	+	558.0	f1_c57bl6.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-637.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.47631785027429	4.2036554733649	4.25553463970405	4.84569212694311	5.44348628400712	4.74196124982761	1.73370728022958	0.000202240336219915	0.00506257939115123
Merged-chr2-124577658-3	chr2	124577162	124578162	+	869.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-32634.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.18185540832923	4.09432246736154	4.14486985985932	3.86863597546555	3.54982771472368	3.71441626002999	-1.35013121801918	0.0105702943038336	0.104482424380302
Merged-chr11-87447633-2	chr11	87447133	87448133	+	941.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	20042.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.74078878872063	6.14782565292453	5.50435298398452	5.45604914396148	6.02313615996379	5.74112645782872	-0.120428874854175	0.745675731211078	0.936251303305737
Merged-chr4-93334710-4	chr4	93334223	93335223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026954, exon 1 of 1)	3' UTR (NM_026954, exon 1 of 1)	788.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	6.08575984904335	6.41502581850473	6.69157444600036	6.23081266001978	6.04699486205101	5.78113553563157	-0.624848401527113	0.0565259030684974	0.306590661790205
Merged-chr9-44483099-2	chr9	44482599	44483599	+	660.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357490, exon 1 of 8)	5' UTR (NM_001357490, exon 1 of 8)	274.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.47717458292256	5.31085445594111	5.6765915127147	5.73626446905667	5.46302422287098	5.66060404339127	0.251734362041067	0.457307308570348	0.812201206649339
Merged-chr10-10557495-4	chr10	10556981	10557981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	URR1B|DNA|hAT-Charlie	726.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	8.68256307671825	9.27600667147259	8.62113070647493	8.67056409847124	9.07264238291829	8.40103879178496	-0.205180403812229	0.476059408074775	0.822323655123358
Merged-chr2-91526725-4	chr2	91526229	91527229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165989)	promoter-TSS (NM_001165989)	-33.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	6.73945652412437	6.58182575820638	6.09164524712716	6.69051951867653	6.59179797488518	6.29013067251505	0.0470542648581169	0.880600524536085	0.972551578099555
Merged-chr7-29156182-4	chr7	29155693	29156693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	17.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	6.72505883685803	6.96816202359928	7.13048596549292	6.54211286359155	6.44199345926846	6.60332229304422	-0.659340302525437	0.0139342899812335	0.126356190143687
Merged-chr16-37854788-4	chr16	37854287	37855287	+	706.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	5S|rRNA|rRNA	-13613.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	3.5735282394065	3.74851204949828	3.82503898023631	3.69262331692049	3.78822755169909	3.40225281807914	-0.233685238340776	0.686444889694945	0.916761528494478
Merged-chr1-39581564-2	chr1	39581064	39582064	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-4217.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	5.1385019417353	5.22336347515741	5.39738046650367	5.1258805319921	5.08787671670348	5.37376924326381	-0.119144678658149	0.741107182819276	0.934742147011145
Merged-chr8-111939521-2	chr8	111939021	111940021	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	3.29139649161587	3.44528203641328	3.51772259507083	3.3784455180169	3.36715344115561	3.371559359933	-0.175145947675959	0.767999097217438	0.942754893315356
Merged-chr2-150904717-4	chr2	150904217	150905217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024465)	promoter-TSS (NM_024465)	14.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	7.67230303028046	7.5955167243536	7.4695449716857	7.44645146427698	7.60749489911332	7.51622620731057	-0.0854869495236086	0.705077428570706	0.92270290989203
Merged-chr6-120466736-4	chr6	120466219	120467219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	3522.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.45665157937345	6.41416628741591	6.71100293013065	6.25788659514145	6.34944960913423	6.63239859385745	-0.181445367322766	0.523831047264291	0.848428438699863
Merged-chr7-126754961-4	chr7	126754378	126755378	+	938.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4748.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.76495538870551	4.39048185187674	4.55522206883089	4.18475788584245	4.21092399577901	4.36936965858781	-0.849559083012415	0.061269681833568	0.321000358015837
Merged-chr15-76537887-3	chr15	76537393	76538393	+	790.899963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013909, intron 2 of 8)	intron (NM_013909, intron 2 of 8)	853.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	4.62158248984268	4.9129237494807	5.39272591301785	4.86640235147767	5.03265056588228	5.25877719682613	0.114047180346267	0.792676726690233	0.950032655975256
Merged-chr1-152611559-2	chr1	152611059	152612059	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	13658.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.04247804719954	5.2429636583715	5.12108361264833	5.46025449821155	5.28509565321427	5.59943904335345	0.614216122153641	0.0840853159041105	0.383731199788802
Merged-chr5-127610966-4	chr5	127610454	127611454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6438.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	7.76824219890699	7.89623450086292	7.50090154062015	7.8118055493519	8.05413979575957	7.57838213348618	0.142153886739607	0.57565916518401	0.871326793455534
Merged-chr11-50377110-3	chr11	50376612	50377612	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-607.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	6.6733070053922	6.9782649830012	7.09307158732335	6.81480763572366	7.0983173978475	6.83983259289883	0.0150000170603368	0.955785080185222	0.989783387008628
Merged-chr2-104590321-4	chr2	104589832	104590832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-152.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	6.86756171545726	7.15505309869782	6.91633696878495	7.23081839456934	7.30480787971571	7.22287257065279	0.398820834523054	0.103503890017771	0.428923336849379
Merged-chr10-127594694-4	chr10	127594203	127595203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 8 of 88)	MIRc|SINE|MIR	26445.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.06535111376314	7.87434349231743	8.24064957672033	8.07957446487554	8.26139509740741	7.99090059387549	0.0794868024459789	0.729610433260004	0.930635866770147
Merged-chr11-3179733-4	chr11	3179262	3180262	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	13701.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.18796823627009	6.41695173546105	6.53013567147877	4.78008295954969	4.49314877806532	6.66062453833815	-1.00727831678735	0.422623243112893	0.791430576664587
Merged-chr11-44399891-4	chr11	44399386	44400386	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-177.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.04479504724132	3.81089096899605	4.01853949160892	3.97878449896996	3.769625337895	3.99205738745752	-0.148752515768075	0.771781487877228	0.943614978016208
Merged-chr15-67977657-4	chr15	67977168	67978168	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	281188.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.4372900070378	3.50676217240017	3.18655732168684	3.24745349958412	3.27671552269508	3.3192908578814	-0.438398358794476	0.480398967564827	0.824543506620807
Merged-chr10-117877567-2	chr10	117877067	117878067	+	925.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31593.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.90400140555505	6.97306306243807	6.8507234232556	7.27984748952262	7.44363173381865	6.90933082181425	0.497068825901675	0.0600531564325649	0.317243542660203
Merged-chr7-118850652-2	chr7	118850152	118851152	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168220, exon 3 of 5)	exon (NM_001168220, exon 3 of 5)	4961.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	2.25270535891513	2.1852976349213	2.52004925713307	2.39422093523093	2.2559641443745	2.65378142202266	0.741124262944519	0.396387274498431	1
Merged-chr6-134225711-4	chr6	134225198	134226198	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 4 of 8)	intron (NM_001303102, intron 4 of 8)	-170631.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.77242361870086	4.38705257463013	4.61713536016509	4.87999955958257	5.26511916854967	4.68536739979514	0.855772522461897	0.0513411513271434	0.288860653059428
Merged-chr9-94669867-4	chr9	94669382	94670382	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177909)	promoter-TSS (NM_177909)	-10.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	6.48880933260368	6.56458346739823	6.40117613126492	6.25930262579447	6.20896168124231	6.13469476960541	-0.473108820341907	0.0812092797521058	0.377055149789914
Merged-chr6-135160222-1	chr6	135159722	135160722	+	570.0	f0_balb.idr	intron (NM_013546, intron 1 of 3)	ID_B1|SINE|B4	7993.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	4.19722798721325	3.85562493791454	4.10118911823882	3.75261414316365	3.61131272951191	3.66964786123737	-1.21717719008191	0.023374572442687	0.179043673369336
Merged-chr1-88223294-1	chr1	88222794	88223794	+	560.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3726.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.60385611988454	5.02188789699604	5.26368671734599	5.25495049225413	4.66863099479452	5.35501859423694	0.284056508375862	0.529801097709667	0.851048470960073
Merged-chr10-88330897-4	chr10	88330407	88331407	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	26168.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	3.57144095505761	3.44674256966562	3.84304395680031	3.94154944790372	3.62081246230374	4.52518552713791	1.39481045153879	0.0232069827081155	0.178235796305785
Merged-chr9-120068879-3	chr9	120068385	120069385	+	829.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-589.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.46325417918811	5.19357332013216	5.24628398568681	4.38913199520697	4.75388485972875	4.31341210617895	-1.75139840361766	8.32093767268299e-05	0.00243192336448404
Merged-chr16-94617514-6	chr16	94617036	94618036	+	999.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	6117.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.80080277674499	6.7593635610309	6.35081263107146	6.43939825810152	6.40406072085031	6.19841083322294	-0.491272234082391	0.0874931267028248	0.392189818486148
Merged-chr18-26864270-4	chr18	26863773	26864773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1110116.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.7151222817405	5.93173304807948	5.71672489023647	6.40765530183163	6.56036166984625	5.80845383169693	0.881136604764899	0.00946502609248823	0.0967406818700111
Merged-chr6-85588743-4	chr6	85588240	85589240	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	1209.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	4.92873099671561	4.99931227248073	5.4150477479804	5.47817755769035	5.69070841369373	5.01427502547354	0.629329968115271	0.119818319974971	0.462702128763978
Merged-chr3-8923701-4	chr3	8923210	8924210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025434, exon 1 of 3)	exon (NM_025434, exon 1 of 3)	147.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	8.09038838091515	8.19868136658347	7.68928407305603	8.14343647357304	8.23995805262254	7.87082783022103	0.114110269122038	0.649570554799658	0.902222890877025
Merged-chr3-102716040-3	chr3	102715532	102716532	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-18738.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	3.58865791726281	3.59848980852657	3.83181817114579	3.6156915726094	3.34860340629668	3.7059604771128	-0.40179249772313	0.487283404226868	0.828379796079542
Merged-chr14-122638367-4	chr14	122637848	122638848	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	104020.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.36109068259513	4.55813261088419	4.50676517383152	4.73745569132601	4.58790991550522	4.3974651865712	0.270671797594617	0.531930889190396	0.851867550687707
Merged-chr17-17900131-2	chr17	17899629	17900629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12305.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	4.50645241542089	4.37704940486895	4.27099137760854	4.63154025767922	4.74419144511549	5.04090062009396	0.996680145288269	0.0226961461023912	0.175625492875269
Merged-chr5-64343423-2	chr5	64342940	64343940	+	776.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	113083.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.21820913283458	6.60972685144952	6.61818742523859	5.84224980012613	6.53653649780769	6.47814777151832	-0.271896974798165	0.416928581562293	0.787748896096239
Merged-chr16-33185870-1	chr16	33185370	33186370	+	623.0	f0_balb.idr	exon (NM_176840, exon 1 of 13)	exon (NM_176840, exon 1 of 13)	799.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	7.72887897633441	8.05495624558641	7.71532968496195	7.71382522392062	8.07043696217948	8.07058763971623	0.164285862226107	0.503553871846316	0.837070472600639
Merged-chr15-82898913-4	chr15	82898416	82899416	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027799)	promoter-TSS (NR_027799)	-164.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	6.19725390246325	6.36755914751258	6.42490207614372	6.54528369436952	6.37635961140463	6.48431649837958	0.226337759417332	0.406346061098639	0.780646569949505
Merged-chr11-102434603-4	chr11	102434103	102435103	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 7 of 12)	intron (NM_008175, intron 7 of 12)	4281.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.04859998195024	3.54041359819937	4.4761646699742	3.88462613971781	3.91187738867118	4.18687741539089	-0.216451229396622	0.716255578623991	0.926569584146506
Merged-chr17-50675418-4	chr17	50674973	50675973	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-23208.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	5.44335695922962	5.68299090267925	5.5811137401281	5.73892266028223	5.62349707611657	5.69774260970551	0.206393294346074	0.51919076949855	0.845665568140067
Merged-chr1-60975845-2	chr1	60975345	60976345	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2069.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.7852620495435	5.95839210429582	6.15826523453234	5.66227078489689	5.80949052999089	5.86986566109503	-0.330126223789825	0.291488254283403	0.689089386291402
Merged-chr13-24323593-4	chr13	24323078	24324078	+	935.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.83436131505385	4.50897079454338	4.82728607310616	4.80881401457516	4.48688308700696	4.89205780200652	0.00633154203106751	0.988217544629208	0.99731652667245
Merged-chr10-40092664-2	chr10	40092164	40093164	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	49590.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	4.48913519037076	4.47026633258039	4.73160939926778	4.49560473646209	4.0770953268939	4.48888658511606	-0.517054119233926	0.263847719311034	0.661864470315546
Merged-chr5-25663315-4	chr5	25662815	25663815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42482.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	6.07907481637326	6.20849004838515	6.11893940333381	5.58340107849905	5.58392806282748	5.91401576707794	-0.79177208404068	0.00995410222580203	0.100116153511971
Merged-chr16-36628490-2	chr16	36627990	36628990	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	37587.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.21549902489495	4.77477237050093	5.34846591989506	5.13494200552333	4.63928334903125	5.07319294295553	-0.356976940960847	0.40224728122297	0.77787096574423
Merged-chr15-59726018-4	chr15	59725514	59726514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68945.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.18798157667328	4.88280538865053	4.6457394318295	4.73006719430111	4.75661884986136	4.67096344400992	-0.479625455282792	0.248845935824261	0.645843447218383
Merged-chr1-195131624-4	chr1	195131094	195132094	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355061)	promoter-TSS (NM_001355061)	-24.0	NM_001355061	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	7.71617920133154	8.06353471001876	7.89191683335721	7.59370571933442	7.76814978207453	7.77797818426611	-0.264058431796325	0.254125692160654	0.651179145391095
Merged-chr10-128093328-4	chr10	128092833	128093833	+	966.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 1 of 29)	CpG	550.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.32787127707248	6.49228489347729	6.54289078103109	6.69424718825778	6.70685885156168	6.5849239085938	0.342195344418193	0.191792717507226	0.578614861877813
Merged-chr16-87664078-4	chr16	87663574	87664574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34880.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.72831112985455	6.01707821510687	5.6785283757487	5.72995077900216	5.65146690803125	5.47826815170571	-0.354255339652926	0.277689255668105	0.674855968126621
Merged-chr7-118117690-4	chr7	118117188	118118188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-1541.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	6.08937610227426	5.64609975113892	6.1814623001577	6.32555130338412	6.42250265014612	6.2004950535252	0.576191287554483	0.0660413819732004	0.335419111959108
Merged-chr2-36214686-4	chr2	36214188	36215188	+	950.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15738.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.94850950272409	6.19289627535992	5.56607999900869	6.31421369575899	6.42126406418827	6.08856400719703	0.584871902297399	0.0762943116649848	0.363695049270699
Merged-chr5-124446889-3	chr5	124446357	124447357	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310727, exon 1 of 7)	5' UTR (NM_001310727, exon 1 of 7)	153.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	2.94032509328056	2.83186502391354	3.02411558029083	3.26960380928073	3.09816857045144	3.15616685559736	1.12845796649646	0.0931465426373273	0.406562272750191
Merged-chr1-121427102-3	chr1	121426613	121427613	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3954.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	3.8159337091457	3.69803803333246	3.69399164528208	3.51411923511045	3.67417682189533	3.76375044818814	-0.292745376061087	0.591896956128899	0.87780418653262
Merged-chr1-151270829-4	chr1	151270317	151271317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73669.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	6.11889448008299	5.90339359901565	5.83451200230561	6.00740451761284	5.7913533752188	5.921012931529	-0.103091756704894	0.735677018128798	0.932816441254758
Merged-chr18-32390228-4	chr18	32389722	32390722	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11938.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.27015853688135	5.26682871388748	5.31045878719499	4.99824361360956	4.83892760324438	5.01361886779675	-0.705873434308238	0.0503704518901956	0.285583575966162
Merged-chr1-75180432-4	chr1	75179909	75180909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023732)	promoter-TSS (NM_023732)	-17.0	NM_023732	74104.0	Mm.28663	NM_023732	ENSMUSG00000026198	Abcb6	1200005B17Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding	4.20126466221892	4.51007323001163	4.43344043321868	4.43869911724566	4.34818454747926	4.54123447628613	0.131034032755328	0.769589139184134	0.943147948233083
Merged-chr1-180290026-6	chr1	180289544	180290544	+	918.477783	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33744.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.30539672952314	3.39550594610826	3.97716982603362	3.43058946497039	3.39271700951676	3.30238046364076	-0.758341674339924	0.241214638984944	0.638385260200477
Merged-chr2-35480281-3	chr2	35479782	35480782	+	732.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18833.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.33722205104935	3.52076829848787	3.45139303689911	3.40320755771898	3.31009044448105	3.23576127569905	-0.460966908866302	0.445132963617971	0.804872520246951
Merged-chr7-114069873-2	chr7	114069373	114070373	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	47908.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.13957691051442	2.34795254291046	2.16833914429017	2.40323866600051	2.18419874745164	2.44308782987568	0.80644219189574	0.363875450056277	1
Merged-chr3-83841686-4	chr3	83841192	83842192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011905)	promoter-TSS (NM_011905)	-84.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	7.93177975104856	7.83812775157959	7.6606219687772	7.51609665113897	7.96905899995255	7.5931017299488	-0.146697493376927	0.556339879702605	0.86357390983939
Merged-chr11-83020116-2	chr11	83019616	83020616	+	982.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_181545, intron 1 of 5)	intron (NM_181545, intron 1 of 5)	606.0	NM_001167743	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	6.58862221800944	6.77005751382178	6.38292484099225	6.77042027388417	6.95051263098851	6.82260147304378	0.395479065015995	0.14048919599222	0.500763580368429
Merged-chr7-99982449-3	chr7	99981949	99982949	+	978.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1991.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.72289247761441	3.82551582764175	4.13733838538077	4.25851408487405	4.17371208616922	4.11370943467132	0.853861788162672	0.0915724588553078	0.402843395184502
Merged-chr10-88200697-4	chr10	88200177	88201177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	-420.0	NM_026070	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	6.54345896773816	6.46795536635586	6.20831575835853	6.34574318527028	6.23852106774221	5.71059287554028	-0.464353267887433	0.150581302272753	0.517489620222838
Merged-chr5-99202816-10	chr5	99202231	99203231	+	896.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50196.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.31204947455295	5.43009778823827	4.89346737488646	5.19479713929687	5.54213411375866	5.00158229880238	0.0730034244819137	0.856794525953355	0.966620914330433
Merged-chr15-100619162-2	chr15	100618662	100619662	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 3 of 3)	B1F1|SINE|Alu	3500.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	3.38514949457038	3.40736249400885	3.50650053267136	3.41506849497832	3.2328834082668	3.72607730286523	0.12290187059179	0.840965253924963	0.962832831784718
Merged-chr5-24540909-4	chr5	24540403	24541403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310476)	promoter-TSS (NM_001310476)	75.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	4.07267183683303	4.09861755771615	4.21127129311667	3.97567846511941	4.00005084822529	4.14478575741172	-0.254755015645417	0.595951170231578	0.879764126188755
Merged-chr17-23675504-2	chr17	23675004	23676004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013749)	TTS (NM_013749)	-1627.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	4.73743740561425	4.8016144113603	4.8162339791494	4.7053221977243	4.7066970961237	4.84440075173165	-0.0821604952043562	0.834264225760413	0.961273502395445
Merged-chr9-42471398-4	chr9	42470896	42471896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173038, intron 1 of 7)	intron (NM_173038, intron 1 of 7)	862.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	5.54854921357003	5.88700717731478	5.43284746604247	5.43246153099095	5.64046592966304	5.82357818826253	-0.0213414038035693	0.951119019286008	0.988640991339789
Merged-chr7-47058849-2	chr7	47058349	47059349	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8209.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	3.04624996099156	3.20467642754199	3.14049108453631	3.23016294647363	3.0316814631109	3.53489810751619	0.587345380328107	0.378233912259439	0.76056276875987
Merged-chr9-122351686-4	chr9	122351206	122352206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026179)	promoter-TSS (NM_026179)	90.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	7.8599144619571	8.1296533194185	7.64108071438189	7.80697899550145	7.64697580740096	7.23382701156007	-0.440317970778698	0.104684515932476	0.431773034683724
Merged-chr2-101699412-4	chr2	101698822	101699822	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009424, exon 8 of 8)	3' UTR (NM_009424, exon 8 of 8)	20902.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.52917673340008	4.71154588373559	4.56082440150553	4.79401562527632	4.83488354835005	5.03348579901065	0.648441814651839	0.109498928152501	0.442183295982202
Merged-chr4-141625627-5	chr4	141625357	141626357	+	739.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033150, exon 20 of 20)	3' UTR (NM_001033150, exon 20 of 20)	-2023.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	2.80222838679184	3.02127370142673	2.9734778494413	2.83760131506946	2.77308760626273	3.10236203047518	-0.143895445498169	0.839911288975072	0.962784121274377
Merged-chr10-10546836-2	chr10	10546336	10547336	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 2 of 2)	intron (NM_026405, intron 2 of 2)	11371.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	2.97635630360711	3.00675976526363	3.29742340733886	3.34611892470228	3.54804207949018	3.3129944036351	1.33890072230541	0.0408241190570883	0.251970659825335
Merged-chr11-98788118-2	chr11	98787618	98788618	+	930.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-7398.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	6.51407502729736	5.91339867357769	5.85130203106546	6.52500279524819	6.45560115796362	5.88733103393413	0.31353997493311	0.386014481222593	0.7668275851124
Merged-chr3-84843800-3	chr3	84843299	84844299	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	-20346.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.09769312190962	2.90471856113507	3.08012206791793	2.93355653564815	2.950822199208	2.91345611349853	-0.444304467545892	0.513992250368329	0.842918670363435
Merged-chr7-67422026-4	chr7	67421527	67422527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49169.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.16715432342566	4.18624864304455	4.34855366470993	4.16146338122423	4.16965669255622	3.94593621219035	-0.355180909900899	0.458428177076431	0.812981239724864
Merged-chr1-131910404-4	chr1	131909908	131910908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175294)	promoter-TSS (NM_175294)	-50.0	NM_001145804	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	8.33311995575035	8.20820449459253	7.79441806903884	8.04846837555687	8.03672292637589	8.2427419128299	-0.0420553831134009	0.863069542155228	0.968167003113825
Merged-chr18-66459494-2	chr18	66458994	66459994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 1 of 2)	intron (NM_021451, intron 1 of 2)	890.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.23183036727357	7.76107119204633	7.20189757135001	7.35720392301305	7.59311636210827	6.98841131695973	-0.12665780352835	0.670413150841788	0.910029595108128
Merged-chr5-110840674-4	chr5	110840145	110841145	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153571)	promoter-TSS (NM_153571)	628.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	5.96699954628503	6.27763895137902	5.99022108406647	6.1161097979007	6.16362632181106	5.8256813646622	-0.0654069997874224	0.832097257673562	0.960599756045642
Merged-chr13-34002297-4	chr13	34001812	34002812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	-51.0	NM_001359997	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	7.60632623461087	8.00482799049903	7.79924121021377	7.89849374744707	8.01053828666083	7.6787268244843	0.0860014724435029	0.722790252671501	0.928947689973901
Merged-chr17-34164568-1	chr17	34164068	34165068	+	634.0	f1_balb.idr	Intergenic	B4A|SINE|B4	11377.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	3.54251732838577	3.45435928223861	3.96120863703044	4.20643696975619	4.2843136439369	4.49862959429052	2.09619570868664	0.000163656854291316	0.00426082412450528
Merged-chr7-101380382-2	chr7	101379882	101380882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	B3|SINE|B2	2260.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.74435277620298	5.69724000684654	5.9053386941704	5.82252829745223	5.59646217722771	5.89664570653855	-0.0185026029132659	0.953307081383104	0.989444493853302
Merged-chr4-132793264-2	chr4	132792764	132793764	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	ID_B1|SINE|B4	3100.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	5.8318395140369	5.13896365276644	5.40746272139119	5.91064388634448	5.97264782817095	5.97795213477164	0.825267889615217	0.0219828095379189	0.171916082694557
Merged-chr1-52766004-4	chr1	52765485	52766485	+	861.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38627.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.41889650297347	5.87371468105565	6.0643008235187	5.58852995532391	5.53241057225151	5.54966430050673	-0.456673618842991	0.192673819458298	0.579656115647455
Merged-chr9-116084852-4	chr9	116084338	116085338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	90525.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.23599893010834	7.34088961697906	7.2338866783535	7.13177615242685	7.05828331103793	6.88032701169545	-0.360282169415581	0.133036570414253	0.488017685026359
Merged-chr11-117135691-2	chr11	117135191	117136191	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	20519.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	4.94682384331322	4.57645586713313	4.76300314954839	4.70759792537475	4.33950208266636	4.7529430155541	-0.397765188507274	0.363371200308803	0.748994025844601
Merged-chr1-37486623-4	chr1	37486099	37487099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	2006.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	7.2663532091852	7.18334681922725	7.22497377507864	7.22995301671837	7.5214494741285	7.28243972696012	0.197048507407891	0.40943514358766	0.7827566573946
Merged-chr3-84647781-4	chr3	84647272	84648272	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18420.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.78501964743129	5.03895432227613	4.98598523866353	5.33709998310658	5.4419397829941	5.1232282218105	0.782681145220302	0.0350640582449205	0.229823565060524
Merged-chr4-144892724-4	chr4	144892219	144893219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-108.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.73511630642168	7.02248853562249	6.86280396434891	6.69544560913538	6.89562863483606	6.93517822848108	-0.055108560694181	0.831393821268974	0.960444904168444
Merged-chr4-126057993-4	chr4	126057531	126058531	+	919.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-534.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	4.62073916965057	4.13312708283319	4.39512031934902	4.71104421543871	4.89193345061918	4.59509470355148	0.837333383822828	0.0648274181197103	0.331889684883762
Merged-chr5-101965200-1	chr5	101964700	101965700	+	540.0	f1_balb.idr	intron (NM_172882, intron 5 of 66)	B3A|SINE|B2	104721.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.48582127982305	3.48359836087039	3.80414217856038	3.63133371777876	3.40955736112185	4.00729030456942	0.353781353441558	0.557752229847849	0.864328451488262
Merged-chr6-84752030-2	chr6	84751530	84752530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-158122.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	7.3092881627162	7.31668113250263	7.32733448233687	7.11916414326987	7.41668307144756	7.42716278279095	0.0170573346545712	0.942965496506836	0.987220023570558
Merged-chr10-62427355-2	chr10	62426855	62427855	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4898.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	2.44318799356076	2.49868602727323	2.58969806116731	2.55742733686956	2.36559413470537	2.33806265204325	-0.520982268750761	0.523643436150641	1
Merged-chr15-63497385-4	chr15	63496876	63497876	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17768.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.49072730850467	4.32570641992579	4.66114641459551	4.17708221035947	3.73175464671405	4.05004375272768	-1.3954276089106	0.00573929466831735	0.0674989725457739
Merged-chr1-194672028-4	chr1	194671540	194672540	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	52211.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	3.86144344436387	3.80297373820592	4.03489083070008	3.43885294023407	3.34668772011144	3.44913054201676	-1.76038047018218	0.00233096649390309	0.0347378920166938
Merged-chr9-95540652-4	chr9	95540172	95541172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19145.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	3.79662447815532	3.50049368769788	3.61615698732381	3.87118720175475	3.9285615190057	3.68806001533171	0.637986459513447	0.247820713457237	0.644879469769509
Merged-chr5-5360061-4	chr5	5359573	5360573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	20178.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.68999772296571	6.78766689950723	6.29736447724427	6.13953029087963	6.61708871363946	6.23010180289018	-0.418723268153755	0.179370596566585	0.560881946603246
Merged-chr5-32458949-4	chr5	32458444	32459444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172707)	promoter-TSS (NM_172707)	-26.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	7.8524650762039	8.02021960430668	7.84874938824704	7.91923380311221	7.86607249551004	7.81388899342794	-0.0627671832197265	0.770376288669297	0.943392092118189
Merged-chr17-43076030-3	chr17	43075490	43076490	+	862.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	59435.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.8806730071269	5.71625205979127	6.07181281103413	5.05524699749505	4.88703021404934	5.0321617788395	-1.76826002792571	4.84929562833135e-07	2.8609040142419e-05
Merged-chr18-89609405-2	chr18	89608905	89609905	+	634.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	intron (NM_001039173, intron 1 of 7)	159731.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	2.87083373381369	2.83116382727842	3.30980240868362	2.99797892857564	2.97011440872819	3.05961208334323	-0.0296363239139902	0.966741195827621	0.992349609766636
Merged-chr3-142699807-3	chr3	142699350	142700350	+	727.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	2.80406299979546	2.48237919369398	2.67652378432862	2.44767465167058	2.27446359507731	2.6891570602417	-1.08599653263188	0.206265837981012	1
Merged-chr8-111325787-2	chr8	111325287	111326287	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 4 of 10)	ORR1B1|LTR|ERVL-MaLR	12418.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	3.78964456848876	3.52543516206286	4.24907412181874	3.87912089594412	3.50896678929048	4.06613356941537	-0.152651703777993	0.802348475627267	0.953198534492307
Merged-chr6-108827763-4	chr6	108827257	108828257	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-884.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	6.10256720622001	6.18599140154772	6.04331039160568	6.3810018235296	6.66114486117765	5.98316746181569	0.453134595860718	0.151162402609187	0.518506648409409
Merged-chr9-95562774-2	chr9	95562274	95563274	+	769.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198414)	TTS (NM_198414)	2957.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.94349379836104	7.05149973046156	6.94624162189224	7.43804803049193	7.58034095212972	7.22816687348534	0.670526841138731	0.00597787757368126	0.0695869106254715
Merged-chr9-121316097-2	chr9	121315597	121316597	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	18595.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.28081783585392	6.67935933427553	6.46337171182187	6.60010163664501	6.8047465238995	6.92898534353646	0.465242008967537	0.0980698101529968	0.41742408696201
Merged-chr1-88576005-4	chr1	88575510	88576510	+	872.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24493.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	6.52749711476249	6.23833567379334	6.47185665582232	6.56612437107552	6.54167665824394	6.21608918970223	0.0721616506844842	0.800770771458463	0.952697697308098
Merged-chr9-7838256-4	chr9	7837770	7838770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	6.64092554452798	6.80480666563791	6.13918664853594	7.0163148094223	7.02046900546785	6.71771314024523	0.557709784346593	0.0657320063112969	0.334542099281326
Merged-chr18-84680185-2	chr18	84679694	84680694	+	948.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	B2_Mm2|SINE|B2	1865.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	5.82610524518599	5.71293953172642	5.54196361432819	5.64746718567823	5.87341871687982	5.71696849930294	0.0884191349691264	0.781898643574267	0.946316742076881
Merged-chr7-131410580-4	chr7	131410080	131411080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025826)	promoter-TSS (NM_025826)	-21.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	6.95010251096002	6.84345132642519	6.7675743923728	6.90229482571903	6.81679128918373	6.2903121465543	-0.231595087825653	0.422505973078898	0.791300013683915
Merged-chr9-21368421-4	chr9	21367921	21368921	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277322)	promoter-TSS (NM_001277322)	-111.0	NM_001277322	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	6.33467781981317	6.3341505987882	6.35040812349157	6.3565605637533	6.41028604588175	6.0712096507837	-0.0654620846329307	0.815807901534443	0.956495686206055
Merged-chr2-25574104-2	chr2	25573604	25574604	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029293, intron 2 of 2)	(GGGTG)n|Simple_repeat|Simple_repeat	767.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	3.97577782390354	3.90026931940081	3.76463271448618	4.09914961979529	3.8689606947789	3.98962915580354	0.29844854724664	0.55926069331684	0.864901733108576
Merged-chr3-144933857-2	chr3	144933357	144934357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	4.51116222152128	4.34523779488401	4.74702437657436	4.39191434220135	4.25751901889214	4.33492772239259	-0.533377510346605	0.235926264927306	0.632261024837056
Merged-chr7-114453388-4	chr7	114452886	114453886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	38132.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	5.86156168618004	6.06045155493215	5.84450059114127	5.87480352645238	6.0926552418059	6.29582011872774	0.279921434295362	0.364507188778224	0.74990409323904
Merged-chr19-55766137-3	chr19	55765637	55766637	+	707.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	24327.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.28339146533725	3.8854261553658	4.51308938103319	4.38933379249794	3.90080026516164	4.72283963941806	0.331971585578571	0.550271048747393	0.86067447804656
Merged-chr6-124918024-6	chr6	124917467	124918467	+	898.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026988)	promoter-TSS (NM_026988)	-21.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	6.46113061320336	5.91020732673893	6.02697080199106	6.3051278010602	5.60222000686156	5.92163076238738	-0.31702514270588	0.379799096788337	0.762090062879934
Merged-chr5-115516261-4	chr5	115515768	115516768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	9592.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	8.3248599860727	8.37313337112209	8.11550598768268	8.01943496513364	8.3872585861721	7.84548662455353	-0.232388539864578	0.346865113645163	0.735036733463727
Merged-chr2-52423447-6	chr2	52423017	52424017	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	1357.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	6.09856343433343	6.32258079154426	6.0832227194362	6.38233861498699	6.54059786937531	6.46711042949277	0.474647264224795	0.0892806531335467	0.396934184373724
Merged-chr16-26035192-3	chr16	26034696	26035696	+	725.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70588.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	4.81981570524051	5.34025599069145	5.21650362201806	4.89163305259723	5.22815745852718	5.15129079536817	-0.0894130168440793	0.822485785177003	0.958097562158607
Merged-chr2-94165024-3	chr2	94164539	94165539	+	947.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7130.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	4.05920943116627	3.73745941864723	3.85559709595805	4.21694112482727	4.33007501174406	4.17633738896393	1.02593949084602	0.0405937324692244	0.25118787025353
Merged-chr10-80263389-2	chr10	80262889	80263889	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	PB1D9|SINE|Alu	-1602.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	3.73628882773381	3.55926141916583	3.97824501835763	3.87171538319786	3.94277940561635	4.17854848583161	0.747888224050853	0.165290230082202	0.540072074597
Merged-chr9-23597483-4	chr9	23596975	23597975	+	826.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	374399.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	3.91391682366839	3.65365188900335	4.33880555729485	4.13660604218664	4.01903751701065	4.10681521538379	0.283646051817625	0.600755560792682	0.881855262262798
Merged-chr8-117252864-4	chr8	117252350	117253350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4169.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	7.57091670754357	7.46595919855838	7.29315082003827	7.54490829658469	7.73606710459755	7.4724174713193	0.206200160644872	0.383632271165851	0.76494131641868
Merged-chr3-100692481-4	chr3	100691973	100692973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	6.18779995845697	6.65175970155739	6.46306045378933	6.80236216698582	6.83409626770833	6.54090653829421	0.459330063419974	0.110054667893569	0.443363350300229
Merged-chr17-74455294-2	chr17	74454794	74455794	+	716.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	B3|SINE|B2	3814.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	6.04950622338975	6.1485883958905	6.20125907135588	5.98429395899951	6.28692367829539	6.46567854275845	0.208982302284706	0.483990010896014	0.826650962533214
Merged-chr1-37314537-3	chr1	37314035	37315035	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	14697.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.90188984492569	4.67558403388983	4.59937470128381	4.90672095167578	4.90068940798121	4.43866501943033	0.0928886527836407	0.82996324806079	0.960147678789899
Merged-chr3-60502424-6	chr3	60501886	60502886	+	913.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	1207.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.12767291599444	6.38705016198527	6.55810941863984	6.66188411083221	6.65364626742413	6.44080331121406	0.378443208302644	0.181756470836242	0.56431236322679
Merged-chr1-34482066-9	chr1	34481412	34482412	+	890.648132	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16500.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	6.2250536374633	6.17230804916286	6.46113292048989	6.47180909526076	6.45468980933231	6.62066373020045	0.376977009435397	0.17134390209814	0.549346256917584
Merged-chr15-79434789-2	chr15	79434289	79435289	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	7029.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	2.47927767126719	2.2411023783164	2.5496162512393	2.3684872985221	2.14037776772188	2.30411751847369	-1.03240115413916	0.241937482711754	1
Merged-chr4-141077322-2	chr4	141076822	141077822	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	B4A|SINE|B4	1035.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	6.80289560856083	6.82460469035964	6.85205005600145	7.14522318115287	6.97196859461552	6.83571848192996	0.260724325224398	0.296524782867517	0.693171366955017
Merged-chr2-121449191-4	chr2	121448710	121449710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	12.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	8.3817302049084	8.59072576194406	8.25231867062941	8.25287730416052	8.41094259041495	8.2100767833687	-0.171316782967373	0.436313348351766	0.799472869647494
Merged-chr1-184729961-4	chr1	184729458	184730458	+	884.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008250, exon 3 of 4)	exon (NM_008250, exon 3 of 4)	2535.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	7.04322799309437	6.97213860119446	6.98993112114789	7.06466190602934	7.18131201536399	7.27005180008069	0.256506726748525	0.281108521799872	0.679294650884466
Merged-chr3-89797376-2	chr3	89796876	89797876	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	23767.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	6.19804602064254	6.11617412328266	5.76723555880009	6.24669681147686	6.25677884322611	6.17108318736039	0.294404933735684	0.325452424760839	0.718159390122652
Merged-chr11-58225890-4	chr11	58225396	58226396	+	846.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10919.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	3.70281632180159	3.71763324914918	4.02027404044853	3.86729732824955	3.70380529735973	4.2161453868463	0.381435142287003	0.4886361666091	0.829408583080924
Merged-chr10-98896814-2	chr10	98896314	98897314	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-17828.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.27064741971297	6.9507330409769	6.43376165973463	6.68597007146526	7.02461047825768	6.97522096978167	-0.0569551830986588	0.856171483019752	0.966380145257578
Merged-chr7-4145991-4	chr7	4145474	4146474	+	833.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	3898.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	3.32661035942434	3.17649899143268	3.45822260891552	3.42021526132741	3.3824631198331	3.95714978160354	1.04455578960588	0.100414274152395	0.422602343011101
Merged-chr2-84617962-4	chr2	84617484	84618484	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	31496.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.63829721306914	5.54199364067139	5.43833136919923	5.69531146534071	6.07655211308076	5.43894033863991	0.43095022827018	0.222387461424045	0.617348898717953
Merged-chr6-125069551-3	chr6	125069051	125070051	+	839.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163269, intron 1 of 1)	intron (NM_001163269, intron 1 of 1)	1631.0	NM_001163269	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	2.79019785529878	2.92087520792243	3.08687366321421	2.74171400131818	2.85688612930995	2.74339669408902	-0.739619483797804	0.30920284231836	0.704802606494279
Merged-chr15-84350379-4	chr15	84349807	84350807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24188.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	4.06433267563735	3.85428667079996	3.84184391174016	4.33711550398775	4.01492749093145	3.68623337469842	0.349531618829554	0.5258593685891	0.8492220423215
Merged-chr11-9335436-4	chr11	9334951	9335951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143509.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	6.78537643391732	6.87809650377038	6.12697038955776	6.88004321856194	7.5518732469821	6.6880352317441	0.70377663691622	0.0517371981254779	0.290286499098096
Merged-chr6-120531332-4	chr6	120530826	120531826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-27.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	5.77699741113682	6.07648055985669	5.94199222075673	5.68988848688221	5.63738398997127	6.00274631926511	-0.292272422252364	0.361206120762438	0.747169629644794
Merged-chr5-124629652-2	chr5	124629152	124630152	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 1 of 19)	intron (NM_011596, intron 1 of 19)	600.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	5.69037581448869	5.53787219659522	5.46497954849779	5.81433922757533	5.76066658653643	5.49782007520076	0.247744437019204	0.449055176427463	0.807560626622209
Merged-chr9-108827635-3	chr9	108827136	108828136	+	807.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1591.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	2.5354347654268	2.43273424583724	2.6161032800434	2.53937497526473	2.41908340734952	2.43570805551185	-0.375195462069599	0.636769351740703	1
Merged-chr11-44516450-4	chr11	44515953	44516953	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2511.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	2.72333402031345	2.68290421569711	2.90741151345267	2.72035348902299	2.79093259803634	2.80203143229874	0.0113259112878838	0.987522727476485	0.997218304929226
Merged-chr11-46849350-2	chr11	46848852	46849852	+	682.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	38553.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.12103555904343	4.99325461659508	5.18503929787546	4.12495120999771	4.0612660233074	4.0447685688687	-2.60069827565801	1.69221787443443e-08	1.45361487773649e-06
Merged-chr12-70234580-2	chr12	70234064	70235064	+	792.166687	f0_c57.idr|f1_c57bl6.idr	TTS (NR_045174)	TTS (NR_045174)	6723.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	4.14841733570091	4.35854582004677	4.23087615382848	4.64934987418486	4.85435631920188	4.48606796585902	1.08438582345822	0.0153890007778075	0.13505832472522
Merged-chr15-79075132-4	chr15	79074660	79075660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145139)	promoter-TSS (NM_145139)	-63.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	5.5230249987086	5.70889856913345	6.11605980501873	5.82453520040427	5.61622106842547	5.89899311325095	-0.0283111393476959	0.93427609418573	0.985707838096286
Merged-chr16-76373771-4	chr16	76373270	76374270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	57.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	8.05970800303044	8.17782491254074	8.06272224950894	8.03949923122628	8.34101897643945	7.88873883423248	0.0138576724647141	0.952532303918515	0.989133870938759
Merged-chr11-85792630-3	chr11	85792127	85793127	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_077059, exon 5 of 5)	non-coding (NR_077059, exon 5 of 5)	-16947.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	3.66920030167724	3.61200072039745	3.70059396725722	3.2322580118128	2.87132054973474	3.16226719785357	-2.48200377671464	0.000400961705634687	0.00880993440782969
Merged-chr19-11698508-4	chr19	11698003	11699003	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033283, intron 1 of 5)	intron (NM_001033283, intron 1 of 5)	1448.0	NM_001033283	225923.0	Mm.297596	NM_001033283	ENSMUSG00000055933	Oosp3	Gm97	oocyte secreted protein 3	protein-coding	3.36346512616036	3.3280511377281	3.28137065255851	3.22515748741186	3.36062253799688	3.23656792799839	-0.186667950364582	0.760359045816633	0.94072272518104
Merged-chr19-34442252-4	chr19	34441732	34442732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32903.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	5.42114515225599	5.34558608853313	5.3454237355412	5.41274874478513	5.82330177754105	5.40942462564612	0.393729169418066	0.259626452730417	0.657223042078191
Merged-chr2-129587548-2	chr2	129587048	129588048	+	845.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5291.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.50621422017888	3.94427731379694	3.94505107627766	3.94451213794114	3.87414202898609	4.01574188258676	-0.654540204992291	0.219095926204104	0.613224645184221
Merged-chr2-129381271-3	chr2	129380762	129381762	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-10123.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.93175115011948	6.64261875065001	6.76262449912321	6.66007492411713	6.94026943065708	6.79053539319727	0.0335688061601219	0.898917598565771	0.976432549466174
Merged-chr19-5601921-4	chr19	5601470	5602470	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026616)	promoter-TSS (NM_026616)	97.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	5.45282688776153	5.56995837187821	5.47593821948651	5.78276040290865	5.46499516018673	6.17262446085618	0.595832110775641	0.0971032326199548	0.415511420471024
Merged-chr10-17788078-4	chr10	17787558	17788558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8161.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.16459555198621	4.35842668228739	4.40034549145436	4.71431468124406	5.01846036091471	5.22004961721647	1.64413742695635	0.000178374680987685	0.00455981580817921
Merged-chr1-184807839-4	chr1	184807336	184808336	+	897.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	B3A|SINE|B2	3464.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	5.96703901760425	5.56331430809135	5.73038161918926	5.44545614750694	5.5074254723738	5.4574568210247	-0.546967802861873	0.100419760662562	0.42260405852774
Merged-chr6-25027218-2	chr6	25026718	25027718	+	764.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71093.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	2.35963409652858	2.3200958094883	2.43149104629975	2.21832318398949	2.27401123453765	2.1062635262325	-1.13137022921971	0.207084457605836	1
Merged-chr12-111448659-2	chr12	111448159	111449159	+	599.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 6 of 11)	intron (NM_009396, intron 6 of 11)	5998.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	5.04302389041429	4.68853084150891	5.52588080941374	5.28562416264188	5.00714514497984	5.42928048355046	0.255011818851902	0.554150513434013	0.862650023515518
Merged-chr16-45371216-2	chr16	45370717	45371717	+	774.799988	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37836.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	3.10215365826725	3.5354793037065	3.17730059535437	2.77585793492939	2.9874097513652	3.00939265849157	-1.63351196020464	0.0250220132631205	0.187064840934208
Merged-chr17-5183440-2	chr17	5182940	5183940	+	834.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	188366.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	2.81763227434292	2.77326072542	3.03023070445728	2.91654820346146	2.6929378065906	2.86835879027225	-0.23552315467135	0.743609927915914	0.935717124869979
Merged-chr1-74382791-2	chr1	74382291	74383291	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 9 of 14)	B1_Mur4|SINE|Alu	7588.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	4.50672271138667	4.07300905705709	4.90914516590154	4.94922063032871	4.34528615458686	5.29973098940389	0.866425790312547	0.106973319768101	0.436517875104906
Merged-chr1-86414510-2	chr1	86414010	86415010	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11819.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	2.86944481219893	2.97672771847229	3.18073847645536	2.9640564251614	2.64804128200781	3.14267759677606	-0.382278316404951	0.606987258339356	0.884418509188691
Merged-chr11-69849403-4	chr11	69848923	69849923	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2779.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	6.29083472296135	6.62395243842	6.62185877312067	5.56727748474194	5.97252242469603	5.95719450537484	-1.13237659618158	0.000311173709450393	0.00718627311017161
Merged-chr7-101011986-4	chr7	101011429	101012429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008773)	promoter-TSS (NM_008773)	69.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	5.95842764657401	5.99559066679216	5.38709922606024	5.40568381055996	4.49178054489444	4.94531190373249	-1.57570604885343	0.000449806090463769	0.00966618418783814
Merged-chr2-25365652-4	chr2	25365163	25366163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	0.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	7.58753820476545	7.94324239322448	7.38834121442668	7.17302969546113	7.35650305499401	7.15968292395516	-0.632855245538177	0.0154619427644013	0.135541227722324
Merged-chr18-34929170-2	chr18	34928670	34929670	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	2833.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	4.84305477790241	4.87829684316119	4.95694882848422	5.05555827762736	4.95666834786737	5.33885447753794	0.484292365045177	0.205034616178644	0.595694220420628
Merged-chr13-111789630-7	chr13	111789123	111790123	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	19370.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.48102626431183	4.37265245996317	4.36804393805798	4.82209366169382	4.54336570592576	4.08472488308612	0.291485495238767	0.547606515021008	0.859389836719927
Merged-chr10-95261295-3	chr10	95260798	95261798	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	62411.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.28432643842734	5.96860591646435	6.09175009250912	6.64610121496803	6.58127733391313	6.13017846572836	0.593545524412759	0.0524307039700354	0.292815223567938
Merged-chr12-100609981-4	chr12	100609486	100610486	+	973.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-89164.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.50440710011172	3.44182848157734	3.54277802739682	3.32605630555733	3.43539922974939	3.71139515786201	-0.00427440607895708	0.994212963037137	0.998918571480046
Merged-chr6-113741631-4	chr6	113741130	113742130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-949.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.29316440592619	6.25951834444445	6.20433882178075	6.23194084240414	6.1843586829238	6.28480030642151	-0.0420507048080572	0.877956292558303	0.971798214667385
Merged-chr17-35187484-1	chr17	35186984	35187984	+	630.0	f1_c57bl6.idr	intron (NM_010734, intron 1 of 3)	ID_B1|SINE|B4	956.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	5.83692852962054	5.52828807634466	5.68016199167699	6.16036826672919	6.14568538483097	6.32536870969707	0.908104042685177	0.00297056140319832	0.0418018726936116
Merged-chr2-12418931-4	chr2	12418438	12419438	+	849.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 1 of 13)	CpG	522.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	5.80137293584235	5.87300428329038	5.92534456603707	6.2857461909759	5.95384997900453	5.96289659685634	0.37173884700712	0.221603607978344	0.616406799915158
Merged-chr2-152295448-4	chr2	152294928	152295928	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	1556.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	4.5871842811516	4.62019467335627	4.59662520277971	4.90952654423145	4.83969454446822	4.4415373524669	0.364611616680199	0.389750969662154	0.769299073766969
Merged-chr7-114016449-4	chr7	114015957	114016957	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	101324.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.03928621793544	2.89698800520165	2.93198571805416	3.2308222521074	3.13075636200682	3.35405161579257	1.24214904402288	0.0636574750425092	0.328769858068221
Merged-chr15-31342701-4	chr15	31342195	31343195	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25064.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	5.56260924698998	5.6417418668402	5.23387835147261	4.72727051130404	4.42128934312384	4.55675417584927	-2.02816713825017	3.91456491450064e-07	2.37061948621375e-05
Merged-chr16-55976484-1	chr16	55975984	55976984	+	541.0	f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1867.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	2.85335364017161	2.87199973049234	2.98927969501986	2.85431976395676	2.94275269278839	3.11664363263028	0.330976734878411	0.630999207123649	0.894974662240063
Merged-chr9-123801761-3	chr9	123801263	123802263	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	-4714.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	3.70536741661062	3.68929022751734	4.24912744905037	3.77519483125705	3.53437817046715	3.78344107762021	-0.641476021264684	0.266103551531803	0.663886553006065
Merged-chr13-58366567-3	chr13	58366070	58367070	+	657.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11623.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	3.15162640804627	3.23505501524305	3.26257603461311	3.01582836393878	3.23098247735919	3.33324970145116	-0.0747173403881274	0.907178946093243	0.978868492078838
Merged-chr3-88505847-2	chr3	88505347	88506347	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	2.3935374968519	2.21917949080196	2.58519000568625	2.29748766493981	2.15122080207981	2.28124551002423	-1.08427750325997	0.218355635854203	1
Merged-chr14-64882809-4	chr14	64882333	64883333	+	848.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	67024.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.09132572521418	5.01637033577958	5.43809276978475	5.08607141416207	4.95731287810679	5.57760686388394	0.0752098197090354	0.852651621682399	0.965481412783042
Merged-chr10-69214410-2	chr10	69213910	69214910	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 1 of 11)	intron (NM_001252638, intron 1 of 11)	1216.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	4.9360773915803	4.74412504862919	5.02783403071561	5.5641365680472	5.50522925660395	5.38852209450252	1.21533749709228	0.000701185159717776	0.0136861869035413
Merged-chr5-143235153-4	chr5	143234659	143235659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289590)	promoter-TSS (NM_001289590)	-4.0	NM_001289589	231866.0	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	5.41847507013255	5.54835162394682	5.77223193036184	5.48192696025829	5.12850986099134	4.86617131843084	-0.761309756736756	0.0479449988088993	0.277581927420741
Merged-chr7-127841639-4	chr7	127841153	127842153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-155.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	8.8743800388775	8.75903496309572	8.43181526419823	8.60248036242544	8.89314881220883	8.46384539558297	-0.0485854453457603	0.839889861282024	0.962784121274377
Merged-chr12-88445645-4	chr12	88445158	88446158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 5 of 9)	intron (NM_001361598, intron 5 of 9)	-68335.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	5.79517071747321	5.55570930981702	5.77131228275017	5.75383759193746	5.61707284731368	5.6774512498668	-0.0480235213125595	0.879510690998684	0.97214795064518
Merged-chr5-122391863-4	chr5	122391360	122392360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019824)	promoter-TSS (NM_019824)	-18.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	8.41977455180225	8.53890114537936	8.34335028637178	8.29879035088911	8.61566919404357	8.13088021138039	-0.0922494227216935	0.692590171718264	0.91870248759071
Merged-chr2-27726426-2	chr2	27725926	27726926	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	(T)n|Simple_repeat|Simple_repeat	15843.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.58186196040885	5.96265572010581	6.09670360385276	5.60197895157576	5.78095715544308	5.91927392618328	-0.217028729270202	0.51586178480812	0.84397121996116
Merged-chr18-50110774-2	chr18	50110282	50111282	+	619.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17419.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	4.69015651103821	5.03015915573066	4.53241285337518	4.19621353084341	4.03862299242439	4.12979146040829	-1.70422829776129	0.000264773086555707	0.00630364491734686
Merged-chr13-74258869-2	chr13	74258369	74259369	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	33462.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	4.24513764817218	4.16089219311525	4.61115449063356	3.77938789697038	4.42733793782646	4.0905643103665	-0.567720368090975	0.296592267107088	0.693171366955017
Merged-chr10-7781468-2	chr10	7780968	7781968	+	937.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-551.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	6.18071248294395	6.20932742549935	5.97058663317443	6.18905485817893	6.34125505010832	6.12503966543089	0.161913668600347	0.57414638403969	0.870523174873875
Merged-chr6-65165188-4	chr6	65164690	65165690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20460.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	7.18108763917363	7.20131231991352	6.52566771466597	7.07050492230333	6.94970728327783	6.60453496634824	-0.184605637092841	0.549898386998963	0.86050509437616
Merged-chr8-11477929-4	chr8	11477438	11478438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	9.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	9.30368929012106	9.63421214649382	8.74377000048621	9.21488614405529	9.59478110526967	8.86504360269297	-0.0266508410731379	0.92970313290073	0.984210069653274
Merged-chr16-17741084-3	chr16	17740584	17741584	+	677.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18137.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	2.46559682887859	2.42504954326907	2.54281293138945	2.42240738799183	2.3222878430561	2.29117361131869	-0.830536804741344	0.314983891825616	1
Merged-chr4-47272250-4	chr4	47271761	47272761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64249.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.95845469148796	5.24250129447999	5.17558381449397	5.07888670481114	4.94928020906084	5.14156658692143	-0.164610278652492	0.657145192493312	0.904754404278634
Merged-chr6-83456627-4	chr6	83456161	83457161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347313)	promoter-TSS (NM_001347313)	-269.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	7.79717418244792	7.42119072236225	7.58671636073141	7.6193646143013	7.07652149946743	7.48799711002731	-0.294195238401712	0.274436441983674	0.67173427081911
Merged-chr11-80384457-2	chr11	80383957	80384957	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	B4|SINE|B4	1178.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	4.80475650307654	4.92560182204098	4.96253151741088	4.82843295957575	4.96009880434262	4.88298653085387	-0.00199218369146553	0.99583290460413	0.998961028701257
Merged-chr7-123123981-4	chr7	123123458	123124458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144925)	promoter-TSS (NM_144925)	73.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	7.82577494317303	8.07316091727014	7.63921744679784	7.67305199449788	7.72337000631691	7.51732725156796	-0.316676300272496	0.186691233270241	0.571383533966608
Merged-chr17-29837664-4	chr17	29837208	29838208	+	967.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 13 of 15)	intron (NM_001081160, intron 13 of 15)	50174.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	2.59451482231685	2.55140792265069	2.64452901300184	2.52257682590815	2.47471105600691	2.39659335652853	-0.771467051159808	0.331094424260873	1
Merged-chr12-84285312-4	chr12	84284800	84285800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029880)	promoter-TSS (NM_029880)	4.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	8.01180479548911	8.18385481204772	7.57062986988924	8.09304913636361	8.31800922016453	7.50935006089239	0.102173945545228	0.734545441104401	0.932518454501854
Merged-chr18-49831990-2	chr18	49831490	49832490	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1007.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	6.21924845307539	6.38740749700437	6.31521516532258	6.43406263491236	6.55700441808076	6.2532178871214	0.198755214809318	0.474561717353164	0.821557327262028
Merged-chr17-35919127-4	chr17	35918674	35919674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-98.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	8.01446328159037	8.35599677049763	7.40437579708711	7.93023304842572	8.14932438409337	7.59343226795683	-0.107672586182977	0.729985661177051	0.930720808358785
Merged-chr11-106789205-4	chr11	106788693	106789693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	-8.0	NM_001355677	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	8.50642332026079	8.47282249770844	8.32822026656553	8.29005331149804	8.57602350432197	8.22526644855837	-0.0855157470677613	0.699096355272556	0.920515737149593
Merged-chr2-129195758-2	chr2	129195258	129196258	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3015.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	3.96067698081918	3.61464962258732	4.14952950871001	3.79593123583887	3.76977977664128	3.94732835173284	-0.259688847983483	0.6348178709983	0.896354115104213
Merged-chr11-79207887-4	chr11	79207376	79208376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35148.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.19074263709111	4.96059139283593	4.73692993806621	4.89096074236123	4.99465715397677	4.99704206112798	-0.0548010801549214	0.888843269435288	0.974196090932383
Merged-chr10-67127198-4	chr10	67126684	67127684	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-74.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.14541551443828	5.80018046042157	5.61587057074505	6.18648591142939	5.60110423167918	5.52744444340815	-0.121368492599577	0.744126739548123	0.9358862398815
Merged-chr8-66440161-4	chr8	66439651	66440651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	46379.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.05964501672523	4.70573699626798	5.32697755691376	5.51761550055202	5.0968385916789	5.47483195348988	0.664027229021942	0.100726254463417	0.423286414777412
Merged-chr11-75530550-4	chr11	75530057	75531057	+	951.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1137.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	5.51048024329389	5.06811277806582	5.73653975536286	5.51280826611293	5.40964764299826	5.36351473500047	-0.0490861883565522	0.895379805302559	0.975665889379756
Merged-chr11-70670034-6	chr11	70669509	70670509	+	892.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	-593.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	5.47753681499704	5.41400882947213	5.87217310355312	5.6679402921718	5.4390915671112	5.81780722298235	0.0929201779178747	0.79055953817109	0.949510125158813
Merged-chr2-164007101-4	chr2	164006607	164007607	+	964.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018753, intron 1 of 5)	RLTR26B_MM|LTR|ERVK	11910.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	4.60835227584855	4.96271534390414	4.75000521068739	4.71188492591676	4.38653696815958	4.18848653375174	-0.795299101112699	0.0829293034361268	0.380987557121549
Merged-chr4-117544805-3	chr4	117544313	117545313	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5511.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	5.2965857729342	5.27896122630409	5.44707011475047	5.38783432464452	5.64615003790716	5.15649173719103	0.177923165317929	0.620143080821391	0.890026802452616
Merged-chr19-37370060-2	chr19	37369560	37370560	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6343.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	6.2934627826078	6.51420370376939	6.44189348826717	6.9517338983544	7.19405855340793	6.89547151809918	0.953730582452478	0.00031188605395364	0.00719872809358516
Merged-chr4-47352425-2	chr4	47351925	47352925	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-797.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.49409152546431	6.68271024658125	6.80280707707946	6.91358550972231	6.83439364797928	6.47765100234144	0.163288031221146	0.556488561127151	0.863603167403937
Merged-chr2-91069388-2	chr2	91068888	91069888	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	MIRb|SINE|MIR	927.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	5.00435747151644	4.71913390792279	4.95120163134546	4.88407441032634	4.71913049251689	4.63181709252001	-0.323513601398978	0.421593894679922	0.790463615415555
Merged-chr8-124150145-3	chr8	124149632	124150632	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81262.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	2.79494075874608	2.79783798694482	2.83049749420314	3.2773209068123	3.55351347902389	3.10322001022171	2.54501636358022	0.000610980617396288	0.012309558162787
Merged-chr10-120167673-4	chr10	120167161	120168161	+	850.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 6 of 11)	RLTR28|LTR|ERVL	33936.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	3.05337291812954	2.86600907062356	3.08743279998168	3.50251977649859	3.16733831594703	3.59949225999706	1.8303165631726	0.00756588147379826	0.0826930074440832
Merged-chr2-18916701-2	chr2	18916201	18917201	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81420.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.20328885617691	4.22398368702114	3.98594165429553	4.03791924948624	3.84714276069041	3.84668797397063	-0.695822037746534	0.164952319938099	0.539617077326343
Merged-chr14-16365049-4	chr14	16364520	16365520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-186.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	7.71674325595143	8.10435549491485	7.74706630086458	7.71043989318842	7.79261418811806	7.89433313837983	-0.106399977062531	0.654349189498928	0.903757094238939
Merged-chr5-134102086-4	chr5	134101604	134102604	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	2356.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	6.19468498296863	5.82973646725575	6.27731115689054	6.47134028006142	5.93040817282466	6.3928792588897	0.287224317808603	0.382749496056809	0.764157347532576
Merged-chr12-111538733-4	chr12	111538237	111539237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178041, intron 2 of 11)	CpG-3539	636.0	NM_173363	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	9.08058824612226	8.85279824273447	8.27328858753997	8.62466706303887	8.49157674839744	8.34154763638453	-0.404404546634044	0.13230099788841	0.486542094594663
Merged-chr8-86862451-7	chr8	86861959	86862959	+	964.371399	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	22799.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.04616783081972	6.07521200017408	6.04736358123074	6.05848912759048	5.88443444207469	6.38467941186472	0.0947243356954662	0.757663072263308	0.939883186830738
Merged-chr2-178078136-2	chr2	178077636	178078636	+	887.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162922, intron 1 of 3)	RMER17B|LTR|ERVK	289.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	3.46307715210088	3.32325078213931	3.3303008896055	3.62404587276458	3.30533662105053	3.56718807357177	0.475541669442047	0.429871630184986	0.795893239447353
Merged-chr11-98710649-4	chr11	98710150	98711150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 16 of 25)	intron (NM_001361995, intron 16 of 25)	9337.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	5.08235319019984	4.93384719608376	4.92474851378935	4.56628962914758	4.66703464106185	4.80540494241182	-0.696209408461567	0.0768146722974019	0.365129691660795
Merged-chr8-115046627-4	chr8	115046144	115047144	+	906.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	606992.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	3.70560983540345	3.8417172117567	3.68070198609214	3.63250733576799	3.62680990264701	3.99490250553973	0.0179994938827564	0.973958306703612	0.994174429365943
Merged-chr8-56301464-4	chr8	56300942	56301942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	6890.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.31450816601577	6.29105771759244	6.18111654732418	6.24974923270719	6.59952997448711	6.67691983866563	0.412087875930943	0.149510543326806	0.515961080764456
Merged-chr5-43233000-4	chr5	43232493	43233493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175937)	promoter-TSS (NM_175937)	-470.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	8.45997628456379	8.63330955580557	8.48729839477139	8.37112283157168	8.58005715019447	8.26554403105782	-0.156419472921718	0.468066452914385	0.818329035469349
Merged-chr6-85029859-3	chr6	85029359	85030359	+	976.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	39654.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	5.80740699785529	5.56660852514917	5.67608577377297	5.46775168145464	5.20359977762885	5.00402151215298	-0.847533191439032	0.0171948116048946	0.14600937687724
Merged-chr10-67261519-2	chr10	67261019	67262019	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB-int|LTR|ERVL-MaLR	23762.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	1.96220160792707	1.81954782202866	2.0121944338978	2.14165743690847	2.00060493481021	2.22141992898996	1.54625045807676	0.113245732067537	1
Merged-chr13-37595379-4	chr13	37594852	37595852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230686.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.55835389597033	7.36824573441831	7.40979216139351	7.50400800712621	7.70982391683994	7.43478382356616	0.164169344979696	0.483719892968474	0.82645869395127
Merged-chr14-75177585-2	chr14	75177085	75178085	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	41160.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.33600341889289	7.858177176804	7.24701655166954	7.9597025540808	8.29515045677883	7.72128473030728	0.719464411709026	0.0129703472393927	0.120733488432194
Merged-chr3-87334860-4	chr3	87334375	87335375	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23006.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	7.83182881342748	7.54295386732765	7.74296919655728	7.65181333500556	7.80060639339854	7.6851870865412	0.00915135216647857	0.96795602020478	0.992633833139547
Merged-chr8-126598478-4	chr8	126597974	126598974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5038.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.232298011108	4.74693531810018	4.63921381378754	4.93772277361059	5.05873267909052	4.61870561159591	-0.0326528987835551	0.941049318273186	0.986888338850358
Merged-chr13-99287398-4	chr13	99286881	99287881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57297.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.30190569147678	6.33130684134165	6.38858555185349	6.76888537600144	6.94178599551773	6.48645086401554	0.6713937300843	0.0150799074864792	0.133259233446789
Merged-chr2-128726545-3	chr2	128726020	128727020	+	570.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	27605.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.29831703709916	4.930456013767	5.23423031088944	5.37978069684408	5.44849162685809	5.58858296411831	0.617316418267718	0.0847352287235445	0.38547093716192
Merged-chr1-21071254-1	chr1	21070754	21071754	+	542.0	f0_balb.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	7971.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	4.17817057565302	4.51564598108649	4.8530674583895	3.84931221744927	3.66134611377984	3.80128329125613	-2.24829430903216	3.68082898685496e-05	0.00122129769011976
Merged-chr11-43682556-4	chr11	43682080	43683080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164231, exon 1 of 4)	exon (NM_001164231, exon 1 of 4)	582.0	NM_001164231	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	7.48164384465576	7.02343955073043	7.18591501227113	7.44908209987594	6.66479416338759	7.0401731976571	-0.231804465994535	0.454773153339269	0.810564504041759
Merged-chr4-108459879-4	chr4	108459374	108460374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 1 of 30)	CpG	448.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	8.19888571370259	8.29939776333731	8.06841392688207	8.60513488244408	8.42970450208702	8.29809696161452	0.360720611648132	0.0984569717582619	0.41841029007527
Merged-chr5-140207307-4	chr5	140206865	140207865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32447.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	6.45942967130168	6.80767061943951	6.97579328354796	7.1306530826783	7.18268110952201	6.86540073672232	0.484586971304906	0.0811151764045209	0.376810607317294
Merged-chr2-75720138-2	chr2	75719638	75720638	+	906.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-15475.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.34719378489934	7.51160930423491	7.24380903916283	7.86192985188211	8.24825997206652	7.49677028252412	0.78044948574968	0.00490779697911628	0.0604362840074452
Merged-chr11-94075034-3	chr11	94074534	94075534	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	MTEb|LTR|ERVL-MaLR	30829.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	7.3334294776997	6.97014543791198	6.49171384826558	7.48060410074939	7.88760416135647	6.70794186969408	0.699429238897201	0.251928844372146	0.649456123013835
Merged-chr10-96616053-2	chr10	96615553	96616553	+	801.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-948.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.35184642142123	6.45482111671727	6.46863001120901	6.35186584340327	6.65288677145989	6.23499227152147	0.0244011583507652	0.931668421406086	0.984929477721491
Merged-chr2-129065964-4	chr2	129065454	129066454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027192)	promoter-TSS (NM_027192)	7.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	5.57512623218994	5.46787039056095	5.66908515691586	5.25944909867084	5.24982396500072	5.17488101775505	-0.661174629063075	0.0503623641313839	0.285557178510678
Merged-chr6-85374168-3	chr6	85373664	85374664	+	962.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177466, exon 1 of 5)	exon (NM_177466, exon 1 of 5)	470.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	6.03037254920217	6.08883786637462	5.95012814675892	5.61812603717576	5.40013795572989	5.57223320849373	-0.909642252791857	0.00331608673879196	0.0453376512259943
Merged-chr7-88244656-3	chr7	88244140	88245140	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33445.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.91259029214296	5.92117791231817	5.99725290053668	6.01205561280027	6.0059676205871	5.98943020236407	0.108787084196088	0.706517831203543	0.922988957951178
Merged-chr1-74817024-4	chr1	74816520	74817520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25001.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	5.2512170257539	5.71826327424294	5.62165667311729	5.59517280072104	5.56610435970447	5.22590698599589	-0.119002268540614	0.742277362489567	0.935185857580278
Merged-chr13-45391275-2	chr13	45390775	45391775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153789, exon 2 of 7)	exon (NM_153789, exon 2 of 7)	1533.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	8.04356586621749	7.98278370447789	7.72466084025033	7.91772040789991	8.00196582623944	7.52663325216064	-0.12690807555339	0.609727657382579	0.885315715493415
Merged-chr4-32560015-4	chr4	32559526	32560526	+	913.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11636.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.55017453312719	6.6015198248905	6.62053755777272	6.55324979479641	6.6470119459803	6.54344441522897	-0.00573655843983708	0.982143163778002	0.995980212202506
Merged-chr12-117843740-4	chr12	117843236	117844236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146040)	promoter-TSS (NM_146040)	-125.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.64184600190468	4.38571361639692	4.35913003024511	4.95733904912888	4.49086187236203	4.17795263165302	0.282978811057904	0.565248479806335	0.866599059240356
Merged-chr12-99616372-4	chr12	99615891	99616891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	MLTR14|LTR|ERV1	11583.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	4.6858095347001	4.57316713365108	4.67620087418358	5.52152810177819	5.46915304753568	5.16640784666769	1.62932379065048	1.85538848088047e-05	0.000684322538639635
Merged-chr13-54504202-4	chr13	54503675	54504675	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176987, intron 1 of 9)	CpG	370.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	5.61410625721457	5.41639289121489	5.57565526019387	5.50622882698463	5.19431261326353	5.43935511736726	-0.303064229493042	0.37547105276462	0.758729275042827
Merged-chr8-72219709-4	chr8	72219216	72220216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-14.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	7.33499702672787	7.7525818287258	7.3809819583979	7.53458783382028	7.55396235684252	7.10847116138023	-0.124877909042851	0.642413455429343	0.899398873915991
Merged-chr1-173730242-1	chr1	173729742	173730742	+	659.0	f0_balb.idr	exon (NM_001204910, exon 5 of 8)	exon (NM_001204910, exon 5 of 8)	11567.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	3.34102780814883	2.98900641290771	3.02669179923443	3.13738369033631	3.13297142231605	3.16052532749699	0.0416812994644772	0.950167343904407	0.988400419899929
Merged-chr9-35114014-4	chr9	35113546	35114546	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-2682.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.71079643715789	5.95577645560946	5.84396145938617	5.88291466873659	5.86384495996561	6.44594395571274	0.417656949360018	0.214222235608201	0.607432426267453
Merged-chr4-128983932-4	chr4	128983457	128984457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9267.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	7.35240902827139	7.07018548771046	7.20008959383889	7.60533780099169	7.70970425316461	6.95841880690626	0.388693067088006	0.1793444692804	0.560853474677651
Merged-chr13-59656781-4	chr13	59656267	59657267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 3 of 9)	RMER15|LTR|ERVL	19017.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	2.9345598605737	2.76368107368162	2.78332975492086	2.86474901113463	2.59157339995356	3.0925673035096	0.149705101674323	0.843560428776456	0.963526468230169
Merged-chr13-20181540-3	chr13	20181037	20182037	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91030.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.52795695957466	5.36043972789991	5.84522166985109	5.83363107373474	5.72097059706392	5.90613343846722	0.43640171434773	0.189777554173833	0.575851897297655
Merged-chr8-72273975-3	chr8	72273504	72274504	+	835.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33986.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	3.48504889753392	3.37029135006247	3.35630072087122	3.28370526160557	3.07111962533648	3.37196400494022	-0.671068447796948	0.28256900204138	0.680451612659422
Merged-chr1-162573914-4	chr1	162573421	162574421	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	MIRc|SINE|MIR	3093.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	6.73374748227357	6.80468911546884	6.90793373912362	6.48011226225186	6.74598508168521	6.66826344595687	-0.272901049349573	0.293791816274846	0.690424156263798
Merged-chr8-80323382-1	chr8	80322882	80323882	+	677.0	f0_balb.idr	Intergenic	Intergenic	-170663.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	2.8544810431358	3.08355188824076	2.88014471021385	3.01961345609398	3.01480484433782	3.35402568298435	0.835500756031344	0.233052394624529	0.629455587763793
Merged-chr15-103332558-2	chr15	103332058	103333058	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	1780.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.11365559787937	5.42943160719577	5.48707196203694	5.31362937838267	5.31731016492961	5.37628237595891	-0.0273355786233577	0.938046336561804	0.98625187415669
Merged-chr3-153566307-4	chr3	153565801	153566801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	Lx8b|LINE|L1	158832.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	5.81856514907762	5.81886457900798	5.61332721283377	5.90412341279688	6.22524121072926	6.1842916945393	0.615563603867033	0.0463715393069147	0.272510985426213
Merged-chr3-60508189-4	chr3	60507692	60508692	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	MIR|SINE|MIR	7013.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.55104148955007	4.48229048324781	4.77012251146746	4.82477785488677	4.69783417775458	5.19566818752573	0.721158080272479	0.0902135135533328	0.399413724812226
Merged-chr3-89909228-4	chr3	89908748	89909748	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3948.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	5.53010970030547	5.46964727051355	5.5981007208315	5.30569779144641	5.30491930253182	5.49546335080611	-0.320780321629426	0.334095385652563	0.724748007849347
Merged-chr15-37906279-2	chr15	37905767	37906767	+	634.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	54589.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	1.97738051305033	2.15530779996445	1.92308895482885	2.14525029923157	2.05331742546991	2.27128688756798	0.979474282601465	0.307939442562122	1
Merged-chr18-54968989-2	chr18	54968489	54969489	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	21191.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.65464714938441	2.4740980159689	3.0219441889079	2.51185558058053	2.49797796440491	2.6948869277778	-0.894708826384745	0.272276689437766	0.669590624345727
Merged-chr6-88904955-8	chr6	88904472	88905472	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	2721.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	6.66649969716913	6.78139318438137	6.09022070393082	6.21378631566056	6.03248863692998	5.59737086240359	-0.94943698523695	0.0068385857757061	0.0768122361264786
Merged-chr8-111095282-3	chr8	111094782	111095782	+	850.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198308, intron 1 of 17)	intron (NM_198308, intron 1 of 17)	537.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	5.65495923697869	5.63129935989766	5.57865390912076	6.07890534708796	5.43268946358821	5.36381929339354	0.0913479619748424	0.805232756784152	0.953809918608747
Merged-chr7-123371626-4	chr7	123371125	123372125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1710.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	7.79605430518276	8.11664729691153	8.00428781796315	7.83140988907852	8.24741080017361	7.98644778023698	0.0844790160709274	0.726150122896407	0.929743505822386
Merged-chr11-5739160-2	chr11	5738660	5739660	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	2016.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	2.44987268450748	2.65967221238287	2.63787254514843	2.89035648314846	2.51976895787623	2.83620738043931	0.927161922161528	0.242518208539862	0.639642928115406
Merged-chr8-68348624-4	chr8	68348130	68349130	+	897.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028182)	TTS (NM_028182)	-19829.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	3.19741270648095	2.94335704723454	2.91300685475491	3.13329587144664	2.96962664006174	3.28147106466984	0.44412630029747	0.518896753465519	0.845517694357366
Merged-chr6-28621177-4	chr6	28620683	28621683	+	744.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	140835.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	5.09983937000423	5.0226032577084	4.72353300330982	5.20356173355918	5.35642899545536	5.10391853271105	0.546648056098741	0.151962600810696	0.519793804499564
Merged-chr11-62847974-4	chr11	62847476	62848476	+	749.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033669, intron 1 of 12)	intron (NM_001033669, intron 1 of 12)	853.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	4.85749898898218	4.67664002670702	4.90497340637877	4.34686879041061	4.90318128152204	4.75012087188782	-0.270231965903673	0.536340543861111	0.853939276247874
Merged-chr17-5629530-2	chr17	5629030	5630030	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	136930.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	2.99291599704452	2.82901341914105	2.99416814475429	2.79570870327221	2.60442023991461	2.63196271876964	-1.38221663109315	0.0669567042176697	0.338177343324652
Merged-chr16-17704451-4	chr16	17703919	17704919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	18481.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	7.50773537990336	7.8308840927185	7.34433073570965	7.40820158091086	7.51744630379397	6.98605354224467	-0.366145094036079	0.186309558072752	0.570803258887202
Merged-chr11-17166238-2	chr11	17165738	17166738	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	6940.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	3.9945768132285	4.00758324624081	3.77077319286476	3.7806551457865	3.54765570767435	3.6792328136567	-0.869920944729994	0.10693496124166	0.436454439973323
Merged-chr11-54724748-2	chr11	54724248	54725248	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	PB1D10|SINE|Alu	62955.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	2.64988005937381	2.69484791725234	2.67741484908463	2.61047561064269	2.44019076791041	2.75062617592765	-0.417171635821526	0.589462057292413	1
Merged-chr16-33574796-2	chr16	33574296	33575296	+	717.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	RLTR20A4|LTR|ERVK	56201.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	4.25145747020222	4.51535987751936	4.00602597988544	4.21411998912432	4.2218851192831	3.97021831282899	-0.375339299836534	0.455503782501121	0.810971386818583
Merged-chr2-165819995-2	chr2	165819495	165820495	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	38178.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.13876662092757	2.94850304455746	3.12124788386074	2.87459924861468	2.86305993478805	2.83301677364888	-1.0236333763973	0.141561646733752	0.502257195591213
Merged-chr5-3386672-2	chr5	3386172	3387172	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	42779.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.1622399150037	5.23114792631115	4.81531843061696	4.71090060369007	4.41518642370099	4.63541607414903	-1.1493725170952	0.00539700106979381	0.0645777487798969
Merged-chr17-35233682-2	chr17	35233180	35234180	+	987.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-1330.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	5.14871492369979	5.39036480200533	5.59168722260836	5.91324194656045	5.94883707587964	5.90596436679569	1.01206513671658	0.00204614359386399	0.0315299477224167
Merged-chr17-23967207-4	chr17	23966715	23967715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8015.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	7.23784207805162	6.80690076865257	6.63992083331911	7.00386456812034	7.09691121881171	6.81516660200218	0.0808398877998105	0.777637705971348	0.945202525595529
Merged-chr10-81172701-2	chr10	81172201	81173201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3930.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	4.6857742121951	4.6206076530889	4.71721327515104	4.402442293259	4.32415405305702	4.54772363524558	-0.628800090631611	0.136643356280154	0.493803274239264
Merged-chr2-157564979-2	chr2	157564479	157565479	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016916, intron 1 of 1)	intron (NM_016916, intron 1 of 1)	1382.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	3.78123827373305	3.51925634868501	3.80372687386957	3.74148217861272	3.69739401023579	3.31225845383694	-0.342389853329137	0.570103598534135	0.869072933274727
Merged-chr10-44638839-4	chr10	44638351	44639351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-180103.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.27837158517414	6.20201534954355	5.77484078489383	5.64739972911368	6.01800562234987	5.88939159715925	-0.431953185979703	0.188023808922192	0.573416108077913
Merged-chr15-81021127-2	chr15	81020627	81021627	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43362.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	4.53902488104666	4.30190681178081	4.35348552822853	4.3152715655821	4.12310289123211	4.50463610712453	-0.241424717958156	0.601342635089157	0.881933867638998
Merged-chr7-45150521-4	chr7	45150015	45151015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-3788.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	5.88032374077799	5.65965975127422	6.06226920687329	5.99735110555156	6.04655777535554	6.18449379936155	0.361782794273038	0.238919277938374	0.635631523582239
Merged-chr8-108749221-3	chr8	108748709	108749709	+	948.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34565.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.79531813642492	5.15921592545104	5.28404110211846	4.91965588401153	4.75127749138278	5.48284235454465	-0.0252650707895921	0.953783571675836	0.989446911725587
Merged-chr6-91685967-5	chr6	91685373	91686373	+	969.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	MIRb|SINE|MIR	1806.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.26259493692101	6.09922642924125	6.13062365078999	6.11699633172725	6.07182528209382	6.0586247178837	-0.14392140986712	0.610983664322061	0.885849400663435
Merged-chr17-17005094-4	chr17	17004623	17005623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58980.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	6.48873695539301	6.70034919077865	7.08861712339576	6.39231833280538	6.35325914639299	6.71009764755827	-0.456903495984652	0.130401158486333	0.482568746844423
Merged-chr6-34352178-3	chr6	34351670	34352670	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1976.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.67690094242365	4.59243644488293	4.46270430739503	4.17319333164708	4.14412563091026	4.309668441547	-0.998179379645497	0.0249305606338404	0.186767091853839
Merged-chr14-103479581-3	chr14	103479089	103480089	+	713.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33752.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	4.21532407861267	4.07149442711102	4.08957546570192	4.16692911383035	4.19095890494652	4.29523697494966	0.241833887678934	0.604787241160171	0.883226183914895
Merged-chr5-139781026-2	chr5	139780526	139781526	+	872.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-5348.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	6.17057170744043	6.33127503365119	5.4376208433462	4.15825090581061	4.08152158783862	4.47148768778005	-4.21235568387277	1.66610301554669e-17	7.49368106581671e-15
Merged-chr3-61364521-4	chr3	61364038	61365038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	31.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	7.21049910282072	7.36151357747845	7.22952479869185	7.29911589284144	7.49131024366709	7.59933805832951	0.28877397708418	0.222900050153331	0.617776133760918
Merged-chr19-42144749-4	chr19	42144261	42145261	+	915.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2628.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	4.33610421955836	3.77856861704851	3.67451431400968	3.59534610317201	3.5533188604791	3.95469430892697	-0.824680066007464	0.167771898394829	0.543845265559115
Merged-chr7-89340192-2	chr7	89339692	89340692	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	MLT1J-int|LTR|ERVL-MaLR	-1405.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.41727128732598	3.4350086338764	3.28115086418635	3.59848893217638	3.4866073893375	3.46958882606535	0.508976684763296	0.386149320686257	0.76695261077152
Merged-chr10-60932073-5	chr10	60931656	60932656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5976.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	6.78764448354267	7.19401624576656	6.6580342601117	7.17689929401807	7.11534535715922	6.682614981078	0.164270060330765	0.578794634741905	0.872437129840066
Merged-chr17-10232647-3	chr17	10232152	10233152	+	795.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 4 of 6)	intron (NM_021881, intron 4 of 6)	86709.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	5.33674817835383	5.443428333326	5.44594147603148	5.95521459277758	5.95630119924915	5.78847986317231	0.922721352501565	0.0033477160896255	0.0456517377704179
Merged-chr9-123932533-3	chr9	123932030	123933030	+	922.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	36162.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.76324181853128	6.55628212346443	6.83874819230801	6.48714987793199	6.49340877636717	6.7515227157042	-0.228692185257924	0.395904408130582	0.773223499946706
Merged-chr15-96735896-4	chr15	96735432	96736432	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36204.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.78925380558978	3.02689143079419	2.9138349449353	2.94451289382475	3.07620879564606	3.21799391368229	0.766197397322866	0.269834840345606	0.666905044122659
Merged-chr8-94089890-4	chr8	94089416	94090416	+	871.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 2 of 16)	intron (NM_026116, intron 2 of 16)	8895.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	3.58109960336123	3.3674123009322	3.54037933824644	3.31743494864457	3.34279612081099	3.39391299955498	-0.563831033471686	0.341362976499346	0.730816878642537
Merged-chr2-122738462-4	chr2	122737922	122738922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019788)	promoter-TSS (NM_019788)	-83.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	7.84441452467794	8.37475738554998	8.12840658606868	7.81588340847947	8.21710876673256	7.89034795885967	-0.205690866666045	0.426732870815259	0.793849313274879
Merged-chr1-123919173-2	chr1	123918673	123919673	+	684.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	B4A|SINE|B4	126386.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.71415129823983	4.51438272486316	4.96137660673933	4.56113403357184	4.33267914450839	4.32644239024604	-0.78574852714792	0.0774523031455167	0.367138988463133
Merged-chr2-157078182-1	chr2	157077682	157078682	+	1000.0	f0_c57.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1083.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	7.0051400407698	6.88923245192453	7.10703027445503	7.1226725096259	6.92212936150272	6.88258760082629	-0.0254370881630614	0.91871631644205	0.981830247255695
Merged-chr10-14148132-4	chr10	14147615	14148615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 9 of 9)	RLTR17|LTR|ERVK	181736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.37018101815508	3.49499465492257	3.41081698222674	3.42978925135158	3.39328793988812	3.69069285900288	0.28123880896143	0.633198935904897	0.895964918948638
Merged-chr15-81466672-4	chr15	81466143	81467143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019712, intron 1 of 4)	CpG	327.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	7.06810792987238	6.77959069697688	6.80855530594921	6.90606278146525	6.87403600165646	6.77437067443664	-0.0619875023450099	0.808406068609094	0.954683711776353
Merged-chr12-64917254-2	chr12	64916754	64917754	+	601.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-657.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	2.66112753817713	2.72069532210309	2.85848341343951	2.86016535883368	2.77405191307515	2.81019963119435	0.362165823178621	0.614517514378202	0.887509542539593
Merged-chr3-127895129-4	chr3	127894625	127895625	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	1198.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	5.19883422230178	5.03217224545382	5.0998982564313	5.36972770504632	5.66792947087554	5.165467212087	0.640791446143895	0.0821679486819181	0.379123019025808
Merged-chr4-47378888-4	chr4	47378385	47379385	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312868, intron 1 of 8)	MTC|LTR|ERVL-MaLR	-7331.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.47848872590857	4.51288176044104	4.59418088479205	4.50469270757532	4.48987434750867	4.26686062394503	-0.23354870118631	0.590499902768393	0.877257510570666
Merged-chr5-96999814-2	chr5	96999314	97000314	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	2125.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.3368372645321	4.09293358905373	4.61718397617931	4.33956293614621	4.54614783903528	4.75474763607599	0.497421692291739	0.291713069050392	0.689198857889432
Merged-chr12-73660472-2	chr12	73659972	73660972	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75676.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.32873016787755	4.09294427495677	4.22628821181242	3.86760987082912	3.49673033959576	3.86759287044662	-1.46848623446802	0.00638743655175039	0.0731067153504878
Merged-chr15-58214000-4	chr15	58213474	58214474	+	904.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	918.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	5.07237054123882	5.33364345757271	5.07626824517974	4.90221577482737	4.69071249176653	5.10696864627382	-0.587836369611556	0.131852732649536	0.485601831465615
Merged-chr15-58018651-2	chr15	58018151	58019151	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15643.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	3.48164070407648	3.39602612159407	3.64323603439331	3.66015785725836	3.75918250472169	3.81320092778997	0.842348108825379	0.130911613566953	0.483569810071875
Merged-chr5-52742247-4	chr5	52741734	52742734	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	660.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	6.20170071637895	6.68425907014242	6.15510064287949	6.24380824420348	5.96054241841391	5.82589740296237	-0.591784876337969	0.0699381452295513	0.346249371586869
Merged-chr8-119834046-3	chr8	119833513	119834513	+	722.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	6566.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.5106644864524	3.33684316958213	3.82745377421152	3.47835606570724	2.93545673198167	3.45157578336261	-0.969936440555904	0.163941895658136	0.537947679388049
Merged-chr2-152293289-1	chr2	152292789	152293789	+	574.5	f0_balb.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	-583.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	4.35311428377628	4.30961400695733	4.40597989831315	4.56141431125433	4.46786767383626	4.51552126540365	0.409281585806291	0.340636210371009	0.730299600436756
Merged-chr9-124279654-4	chr9	124279017	124280017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33177.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	6.41264791079992	6.59917175269621	6.34805759903413	6.73044209359309	6.97757305180981	6.71307757261708	0.562805073579391	0.0369051683091652	0.236743909079409
Merged-chr8-122932624-4	chr8	122932105	122933105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	84231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.22452222186299	6.20696642876285	5.58383248676835	5.66796213463897	5.9459435476821	5.94510719562647	-0.333849997727974	0.33138475859063	0.722673159460747
Merged-chr7-6154282-4	chr7	6153771	6154771	+	989.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	1700.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	7.02606663820451	7.08550492211404	6.68282870605297	6.92790312040025	7.25015154042804	6.75875039230843	0.0834208157112357	0.767306200284986	0.942616128122377
Merged-chr8-76902928-3	chr8	76902435	76903435	+	838.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 1 of 8)	intron (NM_001083906, intron 1 of 8)	427.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	4.08881503342332	3.84842986006653	3.47719271409961	3.84466665515836	3.58805729807337	3.88496617726818	-0.194129983590613	0.74156278918783	0.934878295206222
Merged-chr5-34547641-2	chr5	34547141	34548141	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	B3|SINE|B2	-1935.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	3.70151655403943	3.68114551029621	3.8956478471999	3.47485545773582	3.63932663435478	3.82167146823444	-0.368128010410731	0.5076453927274	0.83931404292053
Merged-chr13-90360111-2	chr13	90359620	90360620	+	695.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	270453.0	NM_025335	66074.0	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	2.54744075871825	2.77943890101618	2.73588342891781	2.86002184346261	2.8902163877631	2.87126127256176	0.954205840290786	0.19702309628101	0.584870414852249
Merged-chr1-106822160-3	chr1	106821639	106822639	+	814.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25414.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	2.08352212913586	2.39270483121822	2.15348669888147	2.39002208940881	2.13947347700226	2.42951987784328	0.692463232989557	0.451839036976566	1
Merged-chr15-25910915-2	chr15	25910415	25911415	+	649.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-22637.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.49364067096206	4.81332469377193	4.59498228360741	4.22502347553932	4.46431041504001	4.62135213237132	-0.497551401676299	0.263990296080161	0.661879105198449
Merged-chr4-150915444-3	chr4	150914956	150915956	+	969.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4699.0	NM_011612	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	6.01731675651023	5.77812717511891	5.73039632795757	6.10355641439974	5.93834752354921	5.68157194009561	0.129303641154196	0.686162196311894	0.916596830431285
Merged-chr3-95819457-4	chr3	95818962	95819962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	-509.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	7.83610198709861	8.11933832358707	7.82690654263739	7.97072842876907	8.1955989856552	8.03896701757905	0.192458713270184	0.398094031568926	0.774826511164352
Merged-chr5-134551863-1	chr5	134551363	134552363	+	754.0	f0_c57.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	571.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	6.23380034538371	6.64241773684108	6.45775245533882	6.55053611875241	6.76820246736047	6.4806441053186	0.249999929382039	0.38117442655668	0.763032822617589
Merged-chr4-127151315-4	chr4	127150801	127151801	+	981.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17903.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	4.88738589911735	5.06204762682292	5.18773679709471	5.5128171830844	5.56501436580237	5.52374991523844	0.986620696792302	0.00457539899680137	0.0575351065023195
Merged-chr9-44316651-4	chr9	44316168	44317168	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359259, intron 4 of 13)	intron (NM_001359259, intron 4 of 13)	3614.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	5.01635694632805	4.89451034206357	5.07470757737963	4.58078227091237	4.23207109610484	4.71740819687222	-1.1315914575254	0.00807555707373909	0.0866271383877764
Merged-chr1-45819703-3	chr1	45819255	45820255	+	727.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028599, intron 17 of 20)	intron (NM_028599, intron 17 of 20)	24589.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	5.2419685116945	5.37083451211404	4.94352749769263	5.12937602362373	4.61691074197246	4.58930988999961	-0.854141149436688	0.0448646871324039	0.267088852179514
Merged-chr7-126599652-2	chr7	126599152	126600152	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4742.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	3.20153209594389	3.0896329909167	3.40667096452261	3.4712330875571	3.31182603770399	3.42350158449991	0.681292605228826	0.272795699771847	0.669951714189667
Merged-chr5-64237806-4	chr5	64237231	64238231	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	Lx9|LINE|L1	7374.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.2005674431067	6.14105207635331	6.34456474911313	6.24939218716932	6.72821194071834	6.64610653292588	0.547896900709954	0.0613034865010839	0.321053973595783
Merged-chr3-135826255-5	chr3	135825769	135826769	+	974.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001135150, exon 2 of 9)	5' UTR (NM_001135150, exon 2 of 9)	479.0	NM_001135150	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	5.67113112872857	5.99641155652046	6.32537209278287	5.70291328328801	5.62054137497841	5.99513775158898	-0.427784685646733	0.216767429717284	0.61037688227024
Merged-chr7-98360242-4	chr7	98359728	98360728	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	1060.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.50192532043124	6.72140675772752	6.48624359359978	6.71366818987887	6.71138556374064	6.68331429844428	0.195426851508289	0.452657619051087	0.809456767794566
Merged-chr7-25250021-4	chr7	25249506	25250506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	CpG	752.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	7.90053082066498	7.97739930637407	7.9663407843032	8.00564957340366	8.26728448993934	8.12269280168593	0.271158069113195	0.20736816351731	0.598124311908915
Merged-chr4-124850661-4	chr4	124850150	124851150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	80.0	NM_001142727	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	8.14130053692248	7.99255883292091	8.01706179976075	8.13109140502012	7.55555581029336	7.9777626019279	-0.206352032824022	0.40989983890366	0.783037226945994
Merged-chr10-79854437-4	chr10	79853952	79854952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	20.0	NM_001283013	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	8.22593628103182	8.26474701304668	7.9906469080434	8.1507375158058	8.43598181216415	7.64270908977615	-0.0577971026261926	0.833261500681615	0.961037118978666
Merged-chr5-92279924-4	chr5	92279432	92280432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1751.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	4.49670670278419	4.64342260747187	4.70439912875234	4.56355131059734	5.06178984797265	5.178939200177	0.78339624635129	0.0687877756195479	0.343105936563442
Merged-chr16-57559186-3	chr16	57558693	57559693	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9951.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.17107704350591	5.92881882200521	5.60151969968152	5.79350957759915	5.68881534134799	5.51295084425736	-0.46130676921846	0.171588031563171	0.549748890798409
Merged-chr6-113622324-4	chr6	113621831	113622831	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1690.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	3.91741536360822	3.69198500130135	3.96232143680749	4.14111480493239	4.06449974893834	4.17128817688686	0.801085143343745	0.110520322844593	0.444247148071402
Merged-chr12-112670855-4	chr12	112670352	112671352	+	742.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3424.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	4.50180097521866	4.4681033107302	4.89094655240738	4.49321173966137	4.16672487580186	4.78520482971259	-0.320131697993656	0.501274655927813	0.835523069455156
Merged-chr19-42094705-3	chr19	42094179	42095179	+	938.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	4244.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	3.71522200997274	3.68063015211213	3.53411558132923	3.40207683913444	3.18204727366521	3.37988959738093	-1.26401714904095	0.0352009712151711	0.230220710243841
Merged-chr18-32393807-2	chr18	32393307	32394307	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	MTEa|LTR|ERVL-MaLR	-15523.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.16683698817262	3.14039844591548	3.24914704305031	2.94233807784213	2.99133523873454	3.62307013591676	0.139042959101161	0.844664105518269	0.96373428957366
Merged-chr5-34485324-2	chr5	34484824	34485824	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243123, intron 20 of 20)	intron (NM_001243123, intron 20 of 20)	28655.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	2.89615834685974	3.08122400291399	3.3525379008555	2.92752022070959	2.80504323825848	3.56870316979552	0.0979942419653156	0.89821111699452	0.976261391798139
Merged-chr15-79545659-2	chr15	79545159	79546159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	PB1D10|SINE|Alu	900.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	7.00068148759344	7.30576153771492	7.03574030747301	6.98664724345481	7.45789350116341	7.26733025272984	0.196429731493637	0.461982783760314	0.815107818354545
Merged-chr11-74988287-4	chr11	74987778	74988778	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	62406.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.02109720309978	5.73779174966285	6.30862694755753	6.34664943767581	6.38476804145508	6.21114439206698	0.489924511859087	0.113570699881369	0.450187448195983
Merged-chr1-80630488-4	chr1	80629982	80630982	+	917.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	34870.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.54119229139285	4.83568803714839	4.33889510913477	4.41153202058828	4.57034347724107	5.02530991713772	0.213396903099273	0.65191166605225	0.902896807825606
Merged-chr17-42436169-4	chr17	42435669	42436669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	119569.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	3.52941552047655	3.73558116622714	3.49535623609188	3.74839744713041	3.51959869675518	3.87882774369656	0.408773219562729	0.475153941034215	0.821727753368561
Merged-chr9-99088369-3	chr9	99087874	99088874	+	659.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	intron (NM_029094, intron 8 of 23)	51837.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.51735688021343	4.84422279684952	4.9540169270158	4.85502982535837	4.78477438739936	4.64205406933556	-0.0231386245950332	0.955649372255857	0.989763164889919
Merged-chr10-84388861-3	chr10	84388373	84389373	+	980.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	51598.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.98796150906934	5.96619947839109	5.79196061215163	5.99175927940071	5.76850077092993	5.8539211818391	-0.0939254803969866	0.756740198629993	0.939691356966399
Merged-chr11-120959093-2	chr11	120958550	120959550	+	721.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030696)	TTS (NM_030696)	9983.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	2.83064883329701	2.69182082913626	2.83538313194993	2.80903273773234	2.70316721742716	3.07750348274325	0.407867936469129	0.57752314419007	0.872148719828391
Merged-chr18-67163957-2	chr18	67163457	67164457	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 4 of 11)	MTE2b|LTR|ERVL-MaLR	30397.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	2.6521970485054	2.91350449746612	3.24894842136687	2.52558782724355	2.35104024189815	2.70377922211898	-2.49985121172756	0.00552062726769592	0.0657159342878697
Merged-chr2-158122688-2	chr2	158122189	158123189	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	intron (NM_009373, intron 10 of 12)	23703.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	3.92564831321285	3.93893169488365	3.96544892321627	4.0053852899003	3.74376294856147	3.98599772939473	-0.0997534068447763	0.844594074644378	0.96373428957366
Merged-chr11-34034107-4	chr11	34033594	34034594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	-12834.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.86387949812322	7.76851074326701	7.60854952195425	7.61961523447036	7.92473023186959	7.6170990303426	-0.0285204510059191	0.903931553202298	0.977927198341699
Merged-chr5-122708154-2	chr5	122707657	122708657	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001310718, intron 1 of 10)	intron (NM_001310718, intron 1 of 10)	613.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	8.84323848263149	8.82568913107213	8.21462668841435	8.46601660980605	8.83663362835534	8.2356862226229	-0.16838819010785	0.546138629829067	0.858518535305996
Merged-chr1-180888867-4	chr1	180888383	180889383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4225.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	5.32156299425588	5.30088245822967	5.41482209613184	5.26222124646508	5.36758369164265	5.5055214837735	0.0684777826668079	0.84014762515829	0.962819298477451
Merged-chr13-100683035-4	chr13	100682541	100683541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183115, intron 5 of 11)	intron (NM_183115, intron 5 of 11)	13560.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	5.62765426651126	5.61789012645093	5.87988979592159	6.03685870914124	6.07096940122567	5.98768412081528	0.589849616834493	0.0513255792993909	0.288833951193272
Merged-chr17-83709742-4	chr17	83709271	83710271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 2 of 16)	intron (NM_054082, intron 2 of 16)	3608.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.93522740837313	7.00805753240216	6.97677696849437	6.73847242757803	7.25747419004106	6.95208148204522	0.0553545097763736	0.836714085914172	0.962001762335242
Merged-chr1-131703666-3	chr1	131703161	131704161	+	785.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	14966.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	2.90597046429105	2.67173430025873	2.86963732621681	3.24809121973195	3.46257592669208	3.52359605236233	2.93055788616278	0.000146855659552056	0.00390276771638692
Merged-chr12-70937830-4	chr12	70937297	70938297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019785)	promoter-TSS (NM_019785)	-60.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	7.21339973834256	7.24988427473149	6.96430202343024	7.47018823729402	7.35187354128894	6.99372127764627	0.208935162340005	0.425016260218474	0.792849788025043
Merged-chr3-57735958-4	chr3	57735446	57736446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304456)	promoter-TSS (NM_001304456)	-111.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	8.58194647372927	8.7952360725241	8.60835116466275	8.54548713664183	8.68149832631692	8.31556151599715	-0.191245350096141	0.383742382700327	0.764993886451692
Merged-chr5-122392968-2	chr5	122392468	122393468	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B4A|SINE|B4	1090.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	5.77498142181712	5.96538139654355	6.18536165103105	5.70633765056893	6.13641887389017	6.33884761901315	0.179454296925228	0.593073021364588	0.878398361724896
Merged-chr10-19590183-3	chr10	19589727	19590727	+	803.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-1722.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.12084939893401	5.13066918082828	5.36205767272019	4.89064076880166	4.67946039346609	4.87284571684343	-0.846428771951336	0.0263354486621052	0.1926604547456
Merged-chr8-80803918-2	chr8	80803418	80804418	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-64459.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	2.26607258282872	2.19776394456315	2.21288694659585	2.28712392308855	2.12931890546804	2.41766977193696	0.356940792752089	0.680589492567045	1
Merged-chr8-46835187-2	chr8	46834687	46835687	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	B3A|SINE|B2	95442.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.58441046501231	4.45510156296807	4.80946176646548	4.66425745011556	4.83448325252066	4.83812221581768	0.39487694554517	0.339586953299496	0.729313720985741
Merged-chr9-115313871-3	chr9	115313344	115314344	+	863.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3423.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	3.55610834423036	3.54642328053477	3.96170192148426	4.99247743039087	5.2996169413644	5.20484816897763	4.62939915956792	9.19655360978814e-14	2.12563009100903e-11
Merged-chr11-5955743-4	chr11	5955263	5956263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	5.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	7.31567493521631	7.6283155104773	7.42696189877719	7.57943183976339	7.36661800662008	7.23554936873539	-0.0896233414328622	0.716897620079281	0.926900633531556
Merged-chr6-38710625-4	chr6	38710108	38711108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47539.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	5.44668882112167	5.608735740944	5.01277349926657	5.1169988205796	5.34800731247591	5.25782807537901	-0.289343047457984	0.444385166661695	0.804158035358769
Merged-chr3-88746026-4	chr3	88745512	88746512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26587.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	6.87324313467944	6.83784075206078	6.47354959590663	6.87099119377455	7.17854745508482	6.2352215647524	0.13511050773266	0.688626461999977	0.9172299553909
Merged-chr1-152430041-4	chr1	152429533	152430533	+	936.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	L1M3|LINE|L1	30166.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	3.75609380302623	3.47295726326969	3.55108392478274	3.58652966991163	3.51266455052856	3.56745128306951	-0.166890954379168	0.769027882436283	0.942987887084179
Merged-chr19-43522205-2	chr19	43521691	43522691	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	2414.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	5.20647104518897	5.07041610604986	4.60755310622138	5.03475268649441	5.11711887943935	4.76575370100713	-0.0190096429255295	0.963998156227786	0.99126729919304
Merged-chr1-156066298-3	chr1	156065794	156066794	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25433.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.55405707416025	3.61929259634209	4.01029815458147	5.00508044979167	5.09052824447729	4.56527196484533	3.48565714767265	3.2787612831858e-10	3.90858408096453e-08
Merged-chr10-59262301-2	chr10	59261801	59262801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	40379.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.06802107052383	5.72589991881295	6.13720137264628	6.44283867009922	6.19532247993948	6.25908206974582	0.544456906589825	0.0732625143014621	0.355619372885081
Merged-chr3-55153156-3	chr3	55152661	55153661	+	761.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	10920.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	2.43600730055841	2.53989226463878	2.54522998527202	2.37880491220581	2.29822947838887	2.29579989678057	-1.20476678732545	0.149688133780414	1
Merged-chr16-90197533-4	chr16	90197019	90198019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23223.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	6.58727529317481	6.56103190052299	6.62258841525262	6.58703734196904	6.83607969515579	6.35272382639218	0.052485486648743	0.850614499896392	0.964981271430729
Merged-chr2-126636096-2	chr2	126635596	126636596	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271469, intron 3 of 3)	intron (NM_001271469, intron 3 of 3)	-17418.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	3.69930630974949	3.58145888930603	3.54481786547382	3.18450805607216	3.22462547547619	3.33784701228457	-1.43851047213648	0.017953885306484	0.150519585751327
Merged-chr7-114531345-2	chr7	114530844	114531844	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 13 of 15)	intron (NM_011055, intron 13 of 15)	31628.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	3.86526433106772	3.9583925275009	3.63652997821282	3.8430569115165	3.84362712080275	3.86945366102166	0.0487758950793322	0.926450987042562	0.983505361373771
Merged-chr6-72391300-4	chr6	72390790	72391790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016794)	promoter-TSS (NM_016794)	-623.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	6.23184424368336	6.17196091813325	6.34088365783172	6.65167133571069	6.92196033998558	6.49537111588319	0.757151720541417	0.0068864652808091	0.0772018897138374
Merged-chr11-50023616-2	chr11	50023116	50024116	+	821.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1715.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	3.65201902437358	3.79452269443396	3.75574301785	3.75354942275917	3.4627897453057	3.82510875174619	-0.181799868659762	0.743982246419019	0.935845965321226
Merged-chr17-81665123-4	chr17	81664615	81665615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	73272.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.90203503142691	5.49100111123886	5.48742752940739	5.78767314858998	5.93610548738241	5.80239463142981	0.35705966972603	0.282074351210986	0.679952462789128
Merged-chr9-121419829-3	chr9	121419312	121420312	+	845.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357968, intron 1 of 14)	intron (NM_001357968, intron 1 of 14)	16366.0	NM_001357968	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	2.66256474152908	3.01341058552832	2.99210653850461	2.90045876244251	2.84197872362914	3.23036229365787	0.460163357399541	0.534195427681379	0.85297101733083
Merged-chr2-59162361-3	chr2	59161860	59162860	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	1510.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.54599512401204	6.70141786660774	6.57453034715979	6.47838561847012	6.97958917191252	6.28758557161083	0.0363979949183434	0.905891710255392	0.978560592879648
Merged-chr11-48856116-1	chr11	48855616	48856616	+	584.0	f0_c57.idr	Intergenic	Intergenic	15304.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	6.04220308028106	6.1830964707299	6.04223492523089	6.03141749224936	6.39201617273439	6.03395941294293	0.140118981431146	0.641603169292017	0.899095902698814
Merged-chr1-186576793-2	chr1	186576293	186577293	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18112.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	4.3884674419623	4.41015052462093	4.33701903213773	4.98803005644077	5.03529332277848	4.54776892829861	1.20301293813332	0.00547504459173867	0.0653089142886634
Merged-chr17-34556414-4	chr17	34555907	34556907	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7888.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	5.92504686876658	5.95176560505876	5.31714477052847	5.73975664231339	5.43042229953022	5.20280654242731	-0.538866509384501	0.158637317632614	0.530435761526001
Merged-chr15-102471162-4	chr15	102470709	102471709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174073, intron 1 of 12)	CpG	577.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	7.68564860238068	7.85461985160827	7.56511638163799	7.8089034506804	8.02897568608607	7.90390519912115	0.296254076956811	0.192926240402187	0.580012523444923
Merged-chr18-35156914-4	chr18	35156417	35157417	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 3 of 17)	MTE2b|LTR|ERVL-MaLR	38005.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	3.58009651335787	4.01233287277936	3.95711681017355	4.11996399136607	3.79704656676681	4.02609124561065	0.368906412228959	0.498316552034048	0.833856267944725
Merged-chr14-21052517-4	chr14	21051975	21052975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134079)	promoter-TSS (NM_134079)	-33.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	7.70055718680995	7.62905095278015	7.21960053188178	7.57878584174334	7.35292977028672	7.37170783894516	-0.151804773411307	0.550213570114873	0.860631826326949
Merged-chr1-85894917-2	chr1	85894417	85895417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	407.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	8.53999992481858	8.57324754137629	8.50292240629059	8.60866799921196	8.6790379719343	8.54226001627793	0.101839365104383	0.606027403817999	0.883842874272091
Merged-chr17-86963237-4	chr17	86962790	86963790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145491, exon 1 of 5)	5' UTR (NM_145491, exon 1 of 5)	179.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	8.40550278576225	8.10098350014962	7.98228617130383	8.17091410795723	7.63595974435878	7.53996301136479	-0.51163840695374	0.0630262651430917	0.326665595491863
Merged-chr2-101797376-4	chr2	101796898	101797898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	CpG	309.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.50425663542346	6.46958795616024	6.69869563835732	7.16885404227297	7.44740883583965	6.92559585719592	1.0096085854569	0.000209114579273658	0.0051924816210691
Merged-chr15-50708412-4	chr15	50707915	50708915	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	180634.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.8583166599131	2.8470688147079	2.8727998380244	3.18304657824445	2.89940821717545	3.00822612980018	0.835374452168489	0.227987003476126	0.622996177254149
Merged-chr7-80831681-4	chr7	80831188	80832188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-28357.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.76725472634767	7.49438978057123	7.59730913722248	7.43612956507906	7.94365635155665	7.61612697785766	0.0935970929749977	0.713658544076483	0.92557476402444
Merged-chr5-73292751-4	chr5	73292257	73293257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159889)	promoter-TSS (NM_001159889)	-37.0	NM_001159887	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	7.73209860271485	8.06076975347903	7.56508418674285	7.71532158624107	8.07681154129791	7.6988576757476	0.05620542177125	0.828820573148604	0.95992013599673
Merged-chr6-82807329-3	chr6	82806854	82807854	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32900.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.08547370116638	5.37366973755802	5.25030501826492	5.96118377872364	5.79603606890991	5.34953354083521	0.93865299179703	0.00983616017476438	0.0993140657470931
Merged-chr4-99111917-4	chr4	99111425	99112425	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 1 of 47)	MLT1K|LTR|ERVL-MaLR	8990.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	3.08423434468973	3.15079413342286	3.44334669902464	2.97389700690889	2.85231367631469	3.46307493289219	-0.469757611345473	0.514720146598113	0.843203472095285
Merged-chr6-145303091-4	chr6	145302588	145303588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52536.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.84821607547309	8.12903472487067	8.08104032956355	8.16789257119914	8.55166195237514	8.28770943115084	0.458212078929141	0.049024753715065	0.281283309913379
Merged-chr1-183320947-4	chr1	183320435	183321435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 8 of 9)	intron (NM_181732, intron 8 of 9)	-23642.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	5.30973002969335	5.70813980956341	5.48997065540893	5.18990091463978	5.44079856813437	5.24353044888104	-0.412500632223343	0.247683955184804	0.6446647234201
Merged-chr10-118863337-2	chr10	118862841	118863841	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5562.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.59364133543587	5.66522198341648	5.93336571070766	5.06796137654666	5.45699170827892	5.66597285102993	-0.59536979056402	0.100515153251148	0.422877180287263
Merged-chr11-75178879-4	chr11	75178380	75179380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027136)	promoter-TSS (NM_027136)	-72.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	6.2355692869865	6.60586266944819	6.54737877523803	6.23081891249783	6.23763033234146	6.57331903983852	-0.201864979711219	0.492435034831363	0.83104217378051
Merged-chr17-5628080-3	chr17	5627641	5628641	+	731.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	135541.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.86301773629956	3.95610331038714	4.14585612462515	4.01401163871057	3.77903733638845	4.16921368464417	0.00115920669506938	0.998208130841157	0.999590080903912
Merged-chr4-142017881-4	chr4	142017388	142018388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-10.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	7.60886607017439	7.56473614621045	7.35026609858329	7.45581890080018	7.61802328656043	7.29161246128961	-0.0707757140262662	0.768493045508158	0.942871018290895
Merged-chr18-20810397-2	chr18	20809897	20810897	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-63993.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.72446800304564	6.76896016912139	7.05825637755867	6.84289898548982	6.66340846911567	6.67727162968531	-0.187009265626149	0.477556066852806	0.823237639056184
Merged-chr1-64123264-2	chr1	64122764	64123764	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.9096224113437	4.80678129871552	4.76810286554327	4.42423387770892	4.83841382288474	4.75675499225339	-0.325435350883423	0.434570780186263	0.798475587990517
Merged-chr5-140207836-2	chr5	140207336	140208336	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32918.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	6.09545637796126	6.61037183924189	6.85185517671076	6.72351201115356	6.84913272098199	6.5352804925722	0.260802614477318	0.408569337508895	0.782163677806636
Merged-chr10-71262628-4	chr10	71262127	71263127	+	901.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	22635.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	4.40368363408387	4.29637550980007	4.5283075996868	4.15926842143553	4.24290510496667	4.25686032933144	-0.497119009393695	0.27227131489695	0.669590624345727
Merged-chr4-62357914-4	chr4	62357420	62358420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	2676.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.39398685688534	6.73428789652554	6.45230433912827	6.42128824853445	6.6931436664552	6.88862285925022	0.218635453730673	0.44999006828579	0.80809209683043
Merged-chr6-142711200-7	chr6	142710746	142711746	+	793.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCT)n|Simple_repeat|Simple_repeat	-8972.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	4.27217474018147	4.28992955215707	4.42410118198155	4.39097649255516	4.27183956320299	4.36308007609099	0.0388375891752251	0.930419997593433	0.98452482441856
Merged-chr7-24971453-4	chr7	24970964	24971964	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010261, intron 3 of 4)	intron (NM_010261, intron 3 of 4)	1264.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	5.1356319645859	5.14873832768992	5.27033881477662	5.18963209976137	4.91306639557385	4.92522521725507	-0.348368879140102	0.346080370283944	0.734515828466387
Merged-chr4-99199202-1	chr4	99198702	99199702	+	717.0	f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	B2_Mm2|SINE|B2	5055.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.3385532094551	6.21452446158111	6.11810243107969	6.65443255836673	6.96552864983011	6.41288978562486	0.772530720707967	0.00877548214344018	0.0919777944072461
Merged-chr14-50924025-2	chr14	50923521	50924521	+	939.8333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009687)	promoter-TSS (NM_009687)	872.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	6.81013129395558	7.34375728034275	7.00600510283589	6.73296811658387	7.25278184331311	6.98235075017271	-0.0959697542431797	0.743790108590248	0.935808433727598
Merged-chr9-23601709-3	chr9	23601202	23602202	+	721.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	378626.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	3.80921389769852	3.71457625822361	3.68474727038488	3.5552770192185	3.84212389522487	3.90568937166583	0.117760377083811	0.828915688178137	0.959925957873127
Merged-chr6-57790734-4	chr6	57790227	57791227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34398.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.1407084123159	6.28312302871785	6.15488791848336	6.48511090171735	6.60497311365093	6.27948504182038	0.454326509940389	0.105226301727495	0.432934412878582
Merged-chr1-171394686-1	chr1	171394186	171395186	+	573.0	f1_balb.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	5726.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	3.35998200421214	3.27357540514656	3.18993605176179	3.19296500773897	3.1558991848861	3.37442329894379	-0.17048585377812	0.785118487868566	0.947850129107983
Merged-chr12-76392314-2	chr12	76391814	76392814	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-11862.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	3.95651151849075	4.08865195075175	4.29940749774112	3.82817027025657	3.81436155930069	3.86540450538912	-0.85151748506256	0.0948638224505306	0.410602836998738
Merged-chr7-116494832-4	chr7	116494361	116495361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9508.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.02971857525318	6.44775664396842	6.62756817628664	6.20075068088361	6.01260123773131	6.45927830721465	-0.261520148982246	0.416612254663969	0.787511585589848
Merged-chr5-146246308-2	chr5	146245856	146246856	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	15106.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	3.78044307438781	3.86798159470699	3.73504821425079	4.05037991015833	3.90281874694401	3.57845137842155	0.21217639083428	0.698721278120379	0.920452297723992
Merged-chr1-170902717-2	chr1	170902217	170903217	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	10224.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	4.32933641337609	4.53086714972541	4.47386584545575	4.03562566312495	4.22842320441292	4.14078977990049	-0.820003367521556	0.0768712466217725	0.365336000051659
Merged-chr6-72390533-4	chr6	72390041	72391041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016794, exon 1 of 3)	5' UTR (NM_016794, exon 1 of 3)	126.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	8.55455176531086	8.74132805254341	8.63405514474485	8.71898108024255	8.89495479195193	8.6243662662723	0.150045340558538	0.471440567766145	0.81999367601546
Merged-chr10-59978365-2	chr10	59977865	59978865	+	933.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24440.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	4.3396277947371	4.37585840549846	4.36116825655422	4.07723193745076	4.03692238143509	4.25361654462796	-0.665508472595394	0.148925959625222	0.514967759530116
Merged-chr17-57331152-4	chr17	57330626	57331626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-27560.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.70081354212725	4.347415394601	4.96919891869636	4.81402613676937	4.75571800377319	4.82471351199503	0.257529575026036	0.552963346413738	0.861983853430146
Merged-chr6-124729510-4	chr6	124729017	124730017	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	B1F2|SINE|Alu	3637.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	6.73158537902232	6.36726525275408	6.78772285997269	6.5845212846882	6.90687507134237	6.81679797277041	0.225140683932834	0.424053708424698	0.792397335906989
Merged-chr11-11730291-4	chr11	11729793	11730793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	40116.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.90629110110219	4.83605554093334	4.96173621188217	4.90142953855369	4.58869740450852	5.15637674270774	-0.0245406088665474	0.952439263479017	0.989124260059756
Merged-chr6-88826256-4	chr6	88825741	88826741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15694.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	6.26535320154695	5.94519280903972	5.71967627974723	6.45779634397368	6.43955099207822	6.07031106569992	0.561343570953833	0.0822189558494461	0.379123019025808
Merged-chr8-85432440-2	chr8	85431940	85432940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025722, intron 1 of 3)	CpG	401.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	6.57262686162958	6.35697361729224	6.99860479722388	6.87159625443493	6.46946624088998	6.50563329090706	-0.0501548637426402	0.872037670648062	0.970261003150518
Merged-chr2-131095040-3	chr2	131094537	131095537	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8272.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	3.63031622495317	3.43942044186824	3.64288935973621	3.4078589749925	3.26635962359958	3.55822811328205	-0.608475562470272	0.30389978567133	0.70033216180076
Merged-chr2-166689888-2	chr2	166689388	166690388	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	23944.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	2.7834129142829	2.59619071116266	2.85968090431267	2.87764538582725	2.68677831911687	3.31738460255593	1.12835587657985	0.145519719543837	0.50870395838761
Merged-chr11-47276871-4	chr11	47276383	47277383	+	919.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	102419.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	2.8475754322204	2.93322215938088	3.19828552498735	2.67561463679885	2.92579855103635	3.3202369428202	-0.00481783519360756	0.994986257426839	0.998961028701257
Merged-chr14-25747086-2	chr14	25746586	25747586	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21770.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.37774258568928	5.08788041429254	5.04869717192463	4.55363323298402	4.69895155655768	4.781000176221	-1.11865190364028	0.00466951216204317	0.0584336059041522
Merged-chr4-129744428-1	chr4	129743928	129744928	+	682.0	f1_balb.idr	Intergenic	Intergenic	-2125.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	4.68991934922103	4.87324944241442	5.29400911690664	5.62060873425596	5.69793863889134	6.02248711762284	1.62614738946812	2.32022475619019e-05	0.00082930095151664
Merged-chr5-115341256-4	chr5	115340760	115341760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	13.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	7.78471700260986	7.8812998172078	7.78957965150041	7.75905394524998	8.0823474541053	7.98788295870381	0.188469014194138	0.400586068852553	0.776861179903924
Merged-chr3-86959777-1	chr3	86959277	86960277	+	789.0	f0_balb.idr	Intergenic	Intergenic	-26809.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	3.59218613274118	3.59803556087215	3.39631873564963	3.03602326937023	2.89751318894397	3.29853796623596	-1.99914803387293	0.00363054067265051	0.0484662326792722
Merged-chr15-39777339-7	chr15	39776796	39777796	+	952.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-19749.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	4.34553731952378	3.68300016014385	3.91325801331896	4.38180100377159	4.2063703735515	3.87609118356754	0.44164645287568	0.436907851319386	0.799697063189253
Merged-chr1-143919612-2	chr1	143919112	143920112	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84537.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.32458176584215	5.6323097218487	5.50649822909322	5.35769119925714	5.32696759789173	5.42400320152266	-0.249405719172068	0.462308903995447	0.815159087955196
Merged-chr5-139250451-1	chr5	139249951	139250951	+	672.0	f1_balb.idr	TTS (NM_024451)	TTS (NM_024451)	-1873.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	2.77834380981066	2.80753539904999	3.27174374212176	2.75208460753981	2.81343800181404	3.23914611182742	-0.0870009677314113	0.909477354882078	0.979506123164556
Merged-chr3-145157052-3	chr3	145156551	145157551	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38451.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	4.056456255782	4.32149134388958	4.34427827301288	4.01734198458094	3.77775402667013	4.0560991186383	-0.862762018080827	0.0848636595640844	0.385758802798497
Merged-chr3-8736747-2	chr3	8736247	8737247	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69709.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.59669565929389	4.34926628598187	4.34392833654626	4.24359074084246	4.24230355246142	4.27556642814856	-0.493051147335074	0.274402512157429	0.671721462492876
Merged-chr17-48408080-2	chr17	48407580	48408580	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1740.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	4.39336308950329	4.55751638760535	4.33768568064945	4.44386729800518	4.45675996713397	4.61601936871813	0.159633068874819	0.713330594435659	0.925481212801358
Merged-chr10-79928273-4	chr10	79927775	79928775	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	934.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	5.10884597460026	5.08372863338278	5.52879727125267	5.46227495350587	5.5082360104737	5.50891435206515	0.496644241068772	0.162616753681132	0.536115331047174
Merged-chr9-106888512-2	chr9	106888012	106889012	+	960.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1512.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	3.45091860008656	3.33439733386432	3.46764097761128	3.77037505861602	3.37196834971657	3.84499845267382	0.910519058787926	0.129444984660199	0.481228589205873
Merged-chr14-45662947-1	chr14	45662447	45663447	+	911.0	f1_c57bl6.idr	Intergenic	Intergenic	-4804.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.58690815378389	3.80635367512834	4.14667972717947	4.77316758383867	5.04177605558638	4.2194996392288	2.39007673032017	1.67956722511981e-05	0.00062782313417686
Merged-chr5-114594867-4	chr5	114594350	114595350	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	26599.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	5.06002067038238	5.37680088476433	5.45448594113465	5.15027280696355	5.2133798544358	5.11444352193134	-0.280164512212147	0.44179145950961	0.802948402491714
Merged-chr2-79088312-2	chr2	79087812	79088812	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167114.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.45957474078659	5.70171167734467	5.06132110340625	5.54252871745837	5.89576045220595	5.08958786026408	0.227237761519741	0.58719784592452	0.875769926947203
Merged-chr6-119471007-4	chr6	119470489	119471489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009525, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	-3778.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	3.84909184647703	4.25452920490266	4.74334174276267	4.07974269200785	4.30560581083314	4.6345510896014	0.068713600972684	0.901462550188431	0.977241855233699
Merged-chr3-15444080-2	chr3	15443582	15444582	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	4.20096142706937	4.09629532439455	3.72894951408845	4.23642322042403	3.77259351395175	4.25449616564415	0.203562091938108	0.712311296954493	0.925030273405448
Merged-chr2-69109438-4	chr2	69108926	69109926	+	821.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172856, exon 10 of 10)	3' UTR (NM_172856, exon 10 of 10)	-26374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	2.73443241882815	2.95346080410282	3.11846606834289	2.66953717358547	2.78688563395052	2.72048420128416	-1.07469254897777	0.152114308768584	0.520013451274295
Merged-chr6-113442588-4	chr6	113442100	113443100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205025)	promoter-TSS (NM_001205025)	31.0	NM_001243739	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	6.30708882575061	6.2681656870528	6.63136046865511	6.30986297785253	6.27861643828765	6.26679684962504	-0.190990642059574	0.499882394179068	0.834822861569763
Merged-chr5-140381326-4	chr5	140380822	140381822	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	7986.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	5.51119145891927	5.65198849000844	5.97128276788822	5.57445570038985	5.32615619061005	5.5735421402357	-0.422573337777422	0.219171021314802	0.613227215079062
Merged-chr1-24680098-2	chr1	24679598	24680598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	1180.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	6.42485584433705	6.23903374783308	6.12456099773202	6.44532430354124	6.41424196528038	6.18551849758945	0.139677982552666	0.624364212816873	0.89196183880064
Merged-chr12-100159737-4	chr12	100159240	100160240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183155)	promoter-TSS (NM_183155)	-87.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	6.01763083162619	6.4470678817197	6.2533443565765	6.41754680073138	6.29687248982231	6.14410474322798	0.0692451913740448	0.816258146527617	0.956616423430214
Merged-chr2-102883203-3	chr2	102882715	102883715	+	857.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	18450.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.65451088946547	5.27171313045973	5.6222765631252	5.6459439450343	5.21106844278941	5.57694349005427	-0.0757569585181648	0.834324489832775	0.961273502395445
Merged-chr11-109426751-2	chr11	109426251	109427251	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 1 of 7)	intron (NM_001252193, intron 1 of 7)	531.0	NM_001252193	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	5.46212344445886	5.68129223622968	5.66389456398546	5.5086158315362	5.36131924164267	5.79987968355942	-0.090813996535134	0.789928887024421	0.949311112850285
Merged-chr1-184853466-4	chr1	184852948	184853948	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	3.17640247559109	3.2302221060809	3.25744716744524	2.90668602985105	3.18130789850463	3.43427380044659	-0.138504354718019	0.837284220925038	0.962133986386607
Merged-chr6-29536412-2	chr6	29535912	29536912	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 8 of 8)	intron (NM_001252382, intron 8 of 8)	7130.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.518791435454	4.40948404839386	5.06527328418752	4.50877124361727	4.84432970760691	5.06666149633777	0.31147251176771	0.505598191159722	0.838177729332582
Merged-chr7-84102769-4	chr7	84102256	84103256	+	656.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-16251.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	2.62624116008557	2.59105262134495	2.81139992088377	2.96033244809606	2.61367341077229	3.1691966714993	1.28669101521306	0.09860047343621	0.418738743106219
Merged-chr8-14675680-4	chr8	14675171	14676171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-212865.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.84003747448565	5.81629719194737	5.6244382635997	5.56498162820438	5.56559832762158	5.54415412255038	-0.391379606564989	0.214451643965365	0.607538973573768
Merged-chr8-105393965-4	chr8	105393460	105394460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18579.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	5.80276805825884	5.81152377444415	5.3673059948923	5.87257511799024	5.63207836856321	5.64646147150711	0.0575227079289158	0.864855176498599	0.968427371194545
Merged-chr1-85243331-1	chr1	85242831	85243831	+	581.0	f1_balb.idr	Intergenic	Intergenic	27235.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.52104574341567	2.51218781536356	2.64085459741649	2.23919045508631	2.37014936751173	2.83000743983772	-0.312336622719837	0.72500947710587	1
Merged-chr4-9632581-2	chr4	9632081	9633081	+	999.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11136.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.03136447883526	5.99813725311615	5.60379843445508	6.46691803922663	6.66712881532831	6.25333189892345	0.965467602523183	0.00214167786120067	0.0325102202218519
Merged-chr7-101347613-1	chr7	101347113	101348113	+	646.0	f1_c57bl6.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-456.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.59446476223435	4.6081968353615	4.54082517491416	4.68557010308255	4.74379036559972	4.68986257437567	0.297175798022124	0.462502675145452	0.815273593730977
Merged-chr7-67342297-2	chr7	67341797	67342797	+	922.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 2 of 11)	intron (NM_001357324, intron 2 of 11)	30561.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.88537447679054	4.86556432138338	4.77053243139141	5.10915295237415	4.96425880488555	5.09160284274202	0.451191030082362	0.230610816808756	0.626381219532661
Merged-chr15-35515705-4	chr15	35515199	35516199	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 17 of 61)	intron (NM_177151, intron 17 of 61)	144153.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	3.46772429211519	3.56028763069984	3.54830738986553	3.35697507311587	2.97889862964533	3.2884219186283	-1.26204405495584	0.0506877919431829	0.286777030802228
Merged-chr9-110735650-2	chr9	110735150	110736150	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	intron (NM_001083936, intron 1 of 13)	6960.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	2.04636026525337	2.1724325471039	2.04038095473788	2.39806032755666	2.22176631686994	2.4535732501022	1.95360445434981	0.0393110561399176	1
Merged-chr13-94158992-5	chr13	94158535	94159535	+	850.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101239.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.31988260953218	4.62418554969587	4.69296193433061	4.42559853896525	3.98923108717298	4.01133932428356	-1.03222760063232	0.0364947003944271	0.235057398023003
Merged-chr17-44789171-3	chr17	44788629	44789629	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	11963.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	3.9332489783541	4.09123092387752	4.10232169597407	3.75441764447785	3.58961776000921	3.73019615347104	-1.13817827085186	0.0302487815016709	0.210060141144302
Merged-chr17-6315945-2	chr17	6315445	6316445	+	607.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166629, intron 1 of 4)	intron (NM_001166629, intron 1 of 4)	1529.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	4.51983715924244	4.70764812130845	4.07001656960524	4.56827783198664	4.6218938138753	4.19702976775512	0.0334268347358956	0.946933535820309	0.988007649185823
Merged-chr7-12965822-4	chr7	12965315	12966315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362139)	promoter-TSS (NM_001362139)	-23.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	7.38216120237098	7.67484308373495	7.16898798224693	7.45466568803411	7.76447214327853	7.18792758801083	0.0990601392770426	0.72392681943543	0.929178878081464
Merged-chr11-120767266-2	chr11	120766766	120767766	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16938.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.55273973928643	3.41059860875221	3.54189366273082	3.65034801744311	3.50400806880072	3.71621749666997	0.427038089803628	0.450520277464071	0.808443910792592
Merged-chr8-106563757-4	chr8	106563266	106564266	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23377.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	5.45492219253846	5.29011183847707	5.32476773607174	5.52415370919387	5.31280537725308	5.61829889273626	0.235031464925013	0.492079685927726	0.830914351658465
Merged-chr4-134838431-3	chr4	134837923	134838923	+	601.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355499, intron 1 of 11)	intron (NM_001355499, intron 1 of 11)	14922.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	3.33179611065711	3.14395479579779	3.2732554918139	2.87634881959886	3.29331982874767	2.98878104450807	-0.753463427130851	0.286853528265759	0.684185873414472
Merged-chr2-124666583-3	chr2	124666106	124667106	+	954.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	13025.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.38625660803073	4.18263237679853	4.26236145089018	4.33149700068356	4.22693630565337	4.33013933502599	0.0345310573222714	0.939356513272439	0.986656947908622
Merged-chr4-125127930-4	chr4	125127425	125128425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-44.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	8.5100101302202	8.74637993245364	8.31504755130282	8.49730007569895	8.58774053809669	8.31408545124513	-0.0922549167399836	0.687175237411361	0.916983035113856
Merged-chr11-77984419-6	chr11	77983868	77984868	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 2 of 14)	CpG-2283	1552.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	6.35914688723435	6.39510381540126	6.89836434455305	6.50439839733805	6.85833333083847	7.16321242854924	0.470561209962624	0.1396114199567	0.499301268000938
Merged-chr1-54829430-1	chr1	54828930	54829930	+	822.0	f0_balb.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	96957.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.45633610442584	3.24533147355764	3.40668705376186	3.10166602502056	3.30821147889588	3.00423191467461	-0.894201333946901	0.180134657644001	0.561849644263301
Merged-chr9-21528074-4	chr9	21527564	21528564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	L2b|LINE|L2	1887.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	6.96673000311375	6.63434587536671	6.83852724559288	7.36926844959077	7.39942730615123	6.7199813933027	0.591993465190351	0.0455820425406903	0.269642442465929
Merged-chr3-103852442-1	chr3	103851942	103852942	+	825.0	f1_balb.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7353.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	3.15499813323386	3.3534767070185	3.209065263188	3.69753850271643	3.61692887770158	3.6258047542928	1.53393604052378	0.0117710062170618	0.112696109229005
Merged-chr11-73096030-3	chr11	73095439	73096439	+	843.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	5344.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	4.46395523179871	4.52844471625934	4.52358091294379	3.88429290739279	3.33696580230647	3.68455703122642	-2.73071957400625	3.60812929951742e-06	0.00016651426664129
Merged-chr6-31160228-2	chr6	31159728	31160728	+	617.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	58246.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.46744721461224	3.50149499407169	3.39320165190626	3.28841036229328	3.37792461200147	3.6220053463379	-0.102183730201255	0.863852155292041	0.968269312109804
Merged-chr1-91023506-2	chr1	91023006	91024006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	24779.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.36334091829473	5.57263881506962	5.24945696726476	5.22142601162161	5.2488954174674	5.03144967782921	-0.461725807798203	0.196865359542772	0.584754678471847
Merged-chr8-70593328-2	chr8	70592801	70593801	+	713.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007924)	TTS (NM_007924)	-1180.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	3.55372392642714	3.53494682205031	3.68932467544705	3.52426012062253	3.18358270619008	3.44376099065419	-0.765476673276943	0.203143396344101	0.593047970473348
Merged-chr3-89202885-4	chr3	89202380	89203380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008094)	promoter-TSS (NM_008094)	-45.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	6.39812887543306	6.70347632010839	6.36633435578131	6.3339336637464	6.69047201588035	6.12702989201526	-0.135438770119323	0.661079631169663	0.906260725325043
Merged-chr3-83839622-4	chr3	83839130	83840130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011905, intron 2 of 2)	RSINE1|SINE|B4	1978.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	7.70642574979186	7.52593959182305	7.12680699477624	7.38106760451436	7.59980421252887	7.236065376366	-0.0925522983635253	0.731737152886995	0.931535693390145
Merged-chr9-62510722-4	chr9	62510222	62511222	+	937.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175484, intron 1 of 11)	intron (NM_175484, intron 1 of 11)	26322.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	2.69330306847368	2.61848168331679	2.78475987896486	2.65471888825825	2.5412414035015	2.85721106057637	-0.071302239962439	0.92484026177059	0.983070278897208
Merged-chr5-23616618-4	chr5	23616142	23617142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-71.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	7.56479425709237	8.1051060709477	7.6350440191127	7.89305565119655	7.9993854576012	7.69166500778032	0.105943099726116	0.684803250533872	0.916021362758981
Merged-chr8-84700229-3	chr8	84699909	84700909	+	789.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164560)	TTS (NM_001164560)	-1048.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	3.49319446721737	3.40355535155916	3.60395116862792	3.28393375397122	3.28121466882337	3.57194727031835	-0.457208691718764	0.446046031481369	0.805543217161561
Merged-chr11-59518399-4	chr11	59517917	59518917	+	980.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11777.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	5.04253572779705	5.14655032872478	5.21923308485969	5.39167648504268	5.27460752980802	5.28303402252951	0.374110012683593	0.28395548796131	0.681611130922129
Merged-chr13-9424693-4	chr13	9424196	9425196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	MTA_Mm|LTR|ERVL-MaLR	148171.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.68791088886697	4.65330141620298	4.91286103008732	5.01496520800012	5.22645111051398	5.08219784891212	0.813008135093906	0.0342658629927198	0.226554940635537
Merged-chr7-28983181-2	chr7	28982681	28983681	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355054, intron 2 of 31)	intron (NM_001355054, intron 2 of 31)	327.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	3.95311974416059	3.89152680050523	3.70467283926816	3.52510166857027	3.74071270762894	3.43050898054731	-0.922251832874651	0.110122179346067	0.443408966805106
Merged-chr11-100356981-2	chr11	100356481	100357481	+	707.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-840.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	4.27822696156526	4.17106405666958	4.3109062483423	3.91373816656165	3.74876485036492	3.86128462071764	-1.23833287008536	0.0127651553650928	0.119397824597419
Merged-chr7-80295038-2	chr7	80294538	80295538	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145150, intron 1 of 13)	intron (NM_145150, intron 1 of 13)	587.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	4.58436621555697	4.55142168812831	4.50823437453835	4.86149703089299	4.84302633724151	5.0635944127147	0.8534917558783	0.0339068824992473	0.225258719154291
Merged-chr1-105993951-4	chr1	105993455	105994455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	CpG	3549.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	7.6673482679485	7.60085590510836	7.1706212446945	7.4746227200469	7.62459859190001	7.12208133177614	-0.106586584999656	0.697681614837317	0.920054706362957
Merged-chr11-59839377-4	chr11	59838878	59839878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011991, intron 1 of 11)	CpG	389.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	7.448482583477	7.60340980976836	7.51914261040355	7.65936378374261	7.7732146788148	7.65243712597649	0.251993653624255	0.254970602171888	0.652024436103169
Merged-chr17-23981782-2	chr17	23981290	23982290	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6560.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.81061543177172	5.7331280993538	5.62674805120473	6.30925106620119	6.45415335479368	6.18671574156252	1.02791504173011	0.000522439889391231	0.010837990106324
Merged-chr7-49251597-2	chr7	49251097	49252097	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	5408.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.85923502870706	5.15485971236691	5.06749196626123	4.4804640935861	4.34866386359082	4.53395718843653	-1.37367699200881	0.000886011810653125	0.0163938783057205
Merged-chr13-5712511-2	chr13	5712011	5713011	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145581.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.33964926845259	3.2820059387737	3.31382253948488	3.37663063349367	3.23816756691078	3.49318575782839	0.216586783277075	0.720483923006607	0.928191401894063
Merged-chr5-115520456-2	chr5	115519942	115520942	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	13766.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.07470788728314	4.77078257197426	5.16422757181771	5.09784686050377	5.27712209177425	5.37928930023542	0.516248854753302	0.171881906669238	0.550350163163658
Merged-chr1-23382764-4	chr1	23382268	23383268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081079, intron 1 of 6)	CpG	407.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	6.37432173145514	6.28502378994567	6.40570096076107	6.30904507815859	5.93842141381356	6.55081608914809	-0.127377382178036	0.67840368108363	0.913437546451449
Merged-chr14-30631258-4	chr14	30630745	30631745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5037.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.87498065188122	4.80975675332684	5.06894982661536	5.15686628088936	4.85937160124534	4.99668012137486	0.202687089308999	0.599583955391164	0.881109493839638
Merged-chr13-58130473-2	chr13	58129973	58130973	+	996.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1917.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	4.82706724029064	4.42908388619642	4.76505988120418	4.80851669091654	4.68924307117623	4.59108175598386	0.0478200063726211	0.910266243182143	0.97984424692051
Merged-chr5-64808865-2	chr5	64808365	64809365	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	5342.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.16480374470783	5.29488234737283	5.43685043934018	5.20398612547592	5.08674091596513	5.29443389367599	-0.216799850695623	0.541186610339473	0.856765739682368
Merged-chr4-133830583-4	chr4	133830108	133831108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	44123.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.54761477364161	5.3749601381029	5.14191727168818	4.85079855965616	4.50101707794275	5.10526145851612	-1.15408556285006	0.0048185382354098	0.0597082545781056
Merged-chr13-51844837-4	chr13	51844314	51845314	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1861.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.37069234313409	4.63293060246016	5.26701077020444	5.49433333441312	4.97168131786849	4.79152081792661	-0.00919543471110573	0.984088329843966	0.996464361754829
Merged-chr10-34034113-3	chr10	34033615	34034615	+	835.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3482.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	2.14651203474508	2.07751768787132	2.24483452956374	2.08115502465922	1.87966550802943	1.98552568340649	-1.40102467777375	0.147118761090872	1
Merged-chr10-51450607-2	chr10	51450107	51451107	+	774.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-30005.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	3.78282301767681	3.93061435091185	3.85549008764167	3.64923703248867	3.56446601401994	3.50002708317827	-0.972224922193947	0.0761095912509118	0.363130192223949
Merged-chr19-41346653-4	chr19	41346151	41347151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	38419.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.41568113947031	7.48180899668122	7.53602795253558	7.83712737809994	7.93476013954778	7.75843652751082	0.540282921169892	0.0137722464213121	0.125392393065383
Merged-chr8-105259949-4	chr8	105259454	105260454	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033161, exon 3 of 5)	exon (NM_001033161, exon 3 of 5)	4640.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	3.58800793027394	3.18837173708598	3.24065377247618	3.26777633627906	3.07249484848029	3.1322760657258	-0.807923478389526	0.218873331053026	0.613128894826908
Merged-chr16-92441059-3	chr16	92440569	92441569	+	775.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25100.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.8361749367599	6.01864220728559	5.86712570137786	4.97483343908876	5.20882289785642	5.42683110567043	-1.33541770150894	9.60476510511795e-05	0.00274113377599629
Merged-chr2-72379608-4	chr2	72379108	72380108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 8 of 19)	intron (NM_023057, intron 8 of 19)	93907.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.29664355299483	4.11391769681111	4.34577025141798	4.96472499175495	5.16285647824732	4.9457033661732	1.90063515429418	7.4923481189762e-06	0.000312806473800187
Merged-chr10-12592171-3	chr10	12591661	12592661	+	733.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	MTD|LTR|ERVL-MaLR	269574.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.6058038549795	3.4656784020156	3.56855817072361	3.65872171203281	3.39183150157684	3.47468689142759	-0.128891076260328	0.823164821643583	0.958214218900685
Merged-chr17-34031678-4	chr17	34031173	34032173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	17.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	8.80692187908411	8.33079401795255	8.43797480717284	8.61521965656238	8.46871153173362	8.22951489551268	-0.130240599589584	0.593521931239067	0.878539957258253
Merged-chr14-45666313-1	chr14	45665813	45666813	+	641.5	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8170.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.78957517223052	8.24922657659866	7.80188367520902	8.13985348999191	8.4541551823874	7.72233820580488	0.252153451170344	0.375263975572345	0.758624025253248
Merged-chr13-3542175-2	chr13	3541675	3542675	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	4100.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	4.46841257509146	4.79078347039786	4.45168446805592	4.67699662516738	4.84684591731999	5.08520733330914	0.65878046753952	0.126314188663294	0.47525891975109
Merged-chr13-23432738-4	chr13	23432229	23433229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1712.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	6.30916679374377	6.20272153365329	6.39585201790078	6.39250363399477	6.96225722656257	6.51058663212846	0.577356920117632	0.0543790917258146	0.299455689233725
Merged-chr10-84402717-2	chr10	84402217	84403217	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	37754.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.53510823655771	4.73199973994194	5.4458343483158	5.44618967891711	4.82460542262427	5.56192633032313	0.0535376256738818	0.906950672591798	0.978868492078838
Merged-chr18-21001752-4	chr18	21001240	21002240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303011)	promoter-TSS (NM_001303011)	-217.0	NM_207623	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	8.18084571776733	8.36466194985541	7.95545904693296	8.18457085021892	8.10172691089498	7.972440170159	-0.130391610814684	0.56875742555823	0.868718319030953
Merged-chr16-22015782-4	chr16	22015288	22016288	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 3 of 16)	intron (NR_027488, intron 3 of 16)	6304.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	4.3682671197004	4.46938226382373	4.74651311900752	4.32651443919777	4.05707764435801	4.59228264337691	-0.509441444245547	0.28585357686217	0.683269783216438
Merged-chr1-156534136-4	chr1	156533601	156534601	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24686.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.98642488089872	5.85705864411457	5.65232343047503	5.19427045046671	5.28290352635862	5.3618690419783	-1.07547875001301	0.00118491740470908	0.020570541917595
Merged-chr14-51253754-4	chr14	51253239	51254239	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	2373.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.63005106185698	4.88654732506873	4.59934355774251	4.03590598237516	4.19497118907768	4.1751246132077	-1.50031837606375	0.00105764577102301	0.0188204853112238
Merged-chr3-30600853-4	chr3	30600380	30601380	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1010.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	6.0327690668271	6.14775385316721	5.74806052996085	6.27948477175363	6.37094440149928	6.30200178065319	0.538692755799033	0.0687417727903555	0.343020415612588
Merged-chr4-19569667-2	chr4	19569173	19570173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 1 of 15)	CpG	435.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	6.78542823701539	6.7769502972214	6.75135500049411	6.56393136362997	6.43452662623581	6.54868278494265	-0.411736284509314	0.104997694303589	0.432306361005943
Merged-chr10-24160575-4	chr10	24160092	24161092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	11275.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.01469114290469	5.11306781001229	4.77768321687597	5.2722027020406	5.16399865909107	5.27658392010366	0.514619160523957	0.166762918981765	0.542370581716491
Merged-chr10-40258161-4	chr10	40257662	40258662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-450.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	7.28563645626868	7.30593262553635	7.2824049023623	7.59852202205666	7.712212031565	7.51245122670841	0.474953944451061	0.0348643096911369	0.229030778729436
Merged-chr3-96486231-2	chr3	96485731	96486731	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33925.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	2.25656242259641	2.26911549505794	2.29375000047751	2.52708974177824	2.51918348009828	2.68923940345399	2.03413989399563	0.0181800816843059	1
Merged-chr1-74258837-3	chr1	74258340	74259340	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 7 of 10)	U6|snRNA|snRNA	-19760.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	4.81821348525522	4.55385631292513	5.12226755201583	4.7979616527995	4.91001672219909	5.12309715571576	0.232600029316894	0.578494477079479	0.872437129840066
Merged-chr15-31468004-3	chr15	31467496	31468496	+	731.600037	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 22 of 25)	MTB|LTR|ERVL-MaLR	-14307.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	5.11805776843411	5.02803937746688	5.27556888829146	5.29081706456622	5.29889997409726	5.27660892511499	0.314213022012983	0.371141872715195	0.755319007603725
Merged-chr6-94221925-3	chr6	94221411	94222411	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	URR1B|DNA|hAT-Charlie	15531.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	4.98150134010014	4.53674626728664	4.03758929606019	3.5864567493383	3.57584672175051	3.89230348750938	-2.69414557733521	5.17821454927548e-06	0.000228335387501915
Merged-chr7-43349840-4	chr7	43349366	43350366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1475.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	4.9949178510724	4.74008303435433	5.16063791282732	5.13062144359395	5.13459303060701	5.2241045315329	0.413943479755387	0.274000440872074	0.671448348817068
Merged-chr18-80151055-4	chr18	80150539	80151539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	443.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	8.30114794974834	8.01196325295497	7.87736400809982	8.19059186111666	7.89538443161146	7.89268971985703	-0.112206559926198	0.64251519263151	0.899438418121699
Merged-chr11-69921527-4	chr11	69921022	69922022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166596)	promoter-TSS (NM_001166596)	-136.0	NM_181582	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	8.35569818869341	8.0922605000783	7.95901419237198	7.92309884553701	8.18177601892955	8.0226402915702	-0.143104192482856	0.53895277871049	0.855628154066673
Merged-chr10-80625276-2	chr10	80624776	80625776	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	2496.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	2.73096432636007	2.75920420227716	3.15124478798599	2.84646524738236	2.79212832881868	2.94803914560504	-0.132022325085026	0.857021520210539	0.966670562326887
Merged-chr15-76670215-3	chr15	76669712	76670712	+	798.422241	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-264.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	2.57944381001769	2.47712101269819	2.54536778315515	2.6075745348666	2.72979766786345	2.86070116075909	1.14690358232658	0.137549198343414	1
Merged-chr18-82857721-2	chr18	82857221	82858221	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_125720, intron 2 of 2)	intron (NR_125720, intron 2 of 2)	1824.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	3.12244129935641	2.73835956715447	3.10922336792133	3.40228167148101	2.89125478265636	3.24012231249575	0.833761871238229	0.258044172633803	0.655513341978737
Merged-chr16-4837805-2	chr16	4837305	4838305	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	2389.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	2.63158353670523	2.42681206070322	2.62360441776644	2.55831741413405	2.50725499268808	2.6968538935928	0.136728871576235	0.860779409626668	1
Merged-chr6-33980928-8	chr6	33980444	33981444	+	903.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48504.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.45682462697143	5.74666330878095	5.79321320983982	6.12672631620958	6.21373825573504	6.04538481999128	0.824099091024747	0.00751594968074022	0.0822877817151358
Merged-chr7-43642492-1	chr7	43641992	43642992	+	1000.0	f0_c57.idr	intron (NM_028236, intron 4 of 5)	B1_Mus1|SINE|Alu	7753.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	6.33185671458354	6.1918042415094	6.18211404080371	6.36366662900393	6.70764822900111	6.54928782762601	0.511428683863053	0.0677070094815842	0.340408751960342
Merged-chr11-95666877-4	chr11	95666388	95667388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008831)	promoter-TSS (NM_008831)	-69.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	5.18841625647746	5.33159032804645	5.36053992012644	5.52815844263206	5.71134771971266	5.45453216711755	0.553284460033542	0.100862313126872	0.423513683621661
Merged-chr11-75157837-2	chr11	75157337	75158337	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 16 of 18)	intron (NM_001002764, intron 16 of 18)	10315.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.66577882117539	2.42907943588824	2.6263723591503	2.56091441922019	2.4815688825637	2.69971164669551	0.0169091457290731	0.982802946727272	1
Merged-chr17-86961102-2	chr17	86960602	86961602	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2009.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	3.6654626473661	3.60678037437953	3.40922230101545	3.14987115081266	3.03911066715627	3.05488298756543	-2.08077784928607	0.00168805551702509	0.027104750790111
Merged-chr15-76327433-4	chr15	76326948	76327948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175399)	promoter-TSS (NM_175399)	51.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	6.99292170476925	7.16667134124947	7.11736865599344	6.92601887922469	7.14497251474922	6.95019393398414	-0.116619406749951	0.635163906420359	0.896439353901449
Merged-chr12-85885204-4	chr12	85884680	85885680	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 12 of 32)	MTD|LTR|ERVL-MaLR	60230.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	3.50926055127101	3.39556607706172	3.24468016028538	3.28673277206439	3.20512595217024	3.31720747569909	-0.501743284430197	0.414410267470945	0.785805817831719
Merged-chr4-132571713-2	chr4	132571213	132572213	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7646.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	5.96979417720487	6.02319995055756	5.82395372872067	5.28977981992829	5.62610254809389	5.19516908301815	-0.999444611465498	0.0036995342169901	0.0490801726924924
Merged-chr16-21423732-2	chr16	21423232	21424232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285894, intron 1 of 45)	intron (NM_001285894, intron 1 of 45)	614.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	6.68288245658662	6.87420036458144	6.59237754202785	6.64065284929676	6.59724684159684	6.19692192084013	-0.353222937237056	0.214553416821271	0.607668896284207
Merged-chr2-34807052-3	chr2	34806539	34807539	+	962.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164769, exon 7 of 7)	3' UTR (NM_001164769, exon 7 of 7)	-7127.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	5.29973717108203	5.29937316688144	5.52797457073868	5.49377987089487	5.52804576842029	5.66965430793433	0.366501056574565	0.271498540738729	0.668863081503721
Merged-chr5-25166826-4	chr5	25166336	25167336	+	760.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14644.0	NM_026449	67909.0	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	2.73287455076249	2.96076307700374	3.04912416274088	2.93530010227972	2.74039013234523	2.82421364768832	-0.411407269185136	0.568545968904657	0.868611680411483
Merged-chr13-9081359-7	chr13	9080655	9081655	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12726.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.16658275126016	5.91541978090449	6.02163576562677	6.04869452203178	6.13910993312639	5.8650979728499	-0.012273815100206	0.967345268792329	0.992555129128888
Merged-chr11-79993774-3	chr11	79993272	79994272	+	859.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199196, intron 1 of 15)	CpG	666.0	NM_199196	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	6.16234119269908	5.8869730442205	5.78488506377321	6.19044856684491	5.80928574945216	5.7666464134864	-0.0395658524377932	0.903658760661814	0.977858102400597
Merged-chr16-97480991-4	chr16	97480487	97481487	+	859.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020622, intron 3 of 7)	MTE2b|LTR|ERVL-MaLR	-18081.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	3.84567007370692	4.06633776799245	4.08527706679391	4.33323959781814	4.53172839521711	4.58493553320011	1.33183037274039	0.00499460419158143	0.0611715261271216
Merged-chr11-98729438-4	chr11	98728923	98729923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011869)	promoter-TSS (NM_011869)	12.0	NM_001361995	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	4.98158081760442	5.21035704265311	5.28218673304965	5.07541000197849	5.36307104855518	5.11848292026852	0.0873872719564654	0.813461878496173	0.955940138311315
Merged-chr6-29533342-3	chr6	29532860	29533860	+	669.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	B1F|SINE|Alu	4078.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.37615163293581	4.55675857695791	4.6051078978455	4.57853849074499	4.56154603781337	4.63145307763807	0.187693935823792	0.655342302411644	0.904247185909195
Merged-chr9-74976125-4	chr9	74975629	74976629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153584)	promoter-TSS (NM_153584)	18.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	6.76182446553716	6.99532737869864	6.18411912330294	6.26591091289493	6.42002352531997	5.74294521812001	-0.828219285127134	0.0216882808372158	0.170425769374167
Merged-chr19-34240761-4	chr19	34240261	34241261	+	987.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360716)	TTS (NM_001360716)	8136.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.70107818732998	3.58221660405719	3.74516390539686	4.11770815565307	4.25053180196453	4.07007089323938	1.50558455703701	0.00351407072057621	0.0473060664160662
Merged-chr15-86183672-3	chr15	86183187	86184187	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2041.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	6.7630021138717	7.06176867507011	7.07878962121382	6.8080953641416	6.84037073359928	6.51629471837168	-0.361749690953686	0.179435123220708	0.560971531728926
Merged-chr16-21689364-4	chr16	21688862	21689862	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	5303.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.97615617858244	5.00095444230726	4.9511912818693	4.92453023565459	5.04724467000358	4.70256955294887	-0.142563454224475	0.712430278873368	0.925077614963799
Merged-chr16-96083069-2	chr16	96082557	96083557	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-629.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	7.82650623490218	7.60581685018651	7.23272473592676	7.33493849293361	6.90529910976542	6.93929175514153	-0.753429304906719	0.00760710632677494	0.0829800869478617
Merged-chr7-81304810-2	chr7	81304310	81305310	+	638.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40424.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	4.81170813920333	4.54166969974201	4.74659028141735	4.70131270482278	4.60715525453726	4.88489389671997	0.0567271470191365	0.890610246743001	0.97453903646658
Merged-chr9-110706994-4	chr9	110706497	110707497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 2 of 6)	intron (NM_028312, intron 2 of 6)	35613.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	5.59041960303497	5.47266239688476	5.40588672106713	5.92109429708459	6.14001096977227	5.30055284072245	0.648014921789301	0.0827647915279676	0.380564366349421
Merged-chr9-108649396-4	chr9	108648892	108649892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	16.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	8.63213259370163	8.70522565557248	8.69884524372892	8.63765242916678	8.63302696990485	8.63914799391683	-0.0583553918542872	0.763042095223194	0.941682496514445
Merged-chr2-150832797-2	chr2	150832297	150833297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151505, exon 13 of 13)	non-coding (NR_151505, exon 13 of 13)	9773.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.19254778768054	4.15195565676152	4.56856751366228	3.89748490775302	4.01181047109309	4.40559106933618	-0.537337136936137	0.293851296542869	0.690438710263513
Merged-chr7-3703367-2	chr7	3702867	3703867	+	863.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029767)	promoter-TSS (NM_029767)	-674.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	5.53061005101947	5.75072504413074	5.86040269880069	6.12908877481457	6.07714832942243	6.24514891921694	0.762427735563308	0.0123052389349163	0.116260883356568
Merged-chr7-127042479-4	chr7	127041960	127042960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145588)	promoter-TSS (NM_145588)	-40.0	NM_145588	110033.0	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	5.6788443733138	6.0909332054312	6.02006122450822	6.17016812873654	6.42954182137699	6.34853076763613	0.648402924757402	0.0341065391386823	0.225914417182891
Merged-chr10-11281757-3	chr10	11281260	11282260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	CpG	173.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	7.44410611579596	7.17432641883804	7.05416672979078	7.24210104629766	6.74895255244085	6.61554116460053	-0.507608550949842	0.0837437902088766	0.382962836103928
Merged-chr13-111933727-4	chr13	111933219	111934219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65783.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.96273814569292	6.77286252046733	6.81107472679331	6.59322139958627	6.65055666583221	6.5437901094821	-0.396542858698403	0.119380569414361	0.461885928625102
Merged-chr14-33856306-2	chr14	33855806	33856806	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-45023.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	2.92746089653784	3.02455305521142	3.14566573177969	2.89649604153932	2.90938982195968	3.04703142680568	-0.386500604465402	0.568664767444302	0.868688415081798
Merged-chr15-62063926-2	chr15	62063426	62064426	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	24669.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	2.36829678746897	2.53142720734643	2.90743100644295	2.69612754676463	2.45318449592891	2.80825541764112	0.214059347211703	0.798541814417606	0.952003256595174
Merged-chr10-81257401-4	chr10	81256853	81257853	+	952.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285854)	promoter-TSS (NM_001285854)	54.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	3.44473449720018	3.33125530174999	3.39421180998914	3.0917467483509	3.25753696891116	3.29856058406652	-0.696244453877361	0.261688495963506	0.659457534066706
Merged-chr17-26236208-2	chr17	26235708	26236708	+	811.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8034.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.23220561041966	7.15610485355544	7.52118720472856	7.73454183109219	8.03809778189445	7.30915765407467	0.628698427965491	0.0258368786009749	0.190554422498663
Merged-chr19-42461281-3	chr19	42460811	42461811	+	814.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29523.0	NM_001356589	72832.0	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	5.05979185423922	5.48006414123742	5.04506456469539	4.81998205903608	4.7249526376649	4.72591326587942	-1.00101335387982	0.0116842637092647	0.11217209569859
Merged-chr11-54728712-2	chr11	54728212	54729212	+	743.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	58991.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.56291618195114	6.82094909366722	6.53528128612717	6.46203376661872	6.33970577165673	6.77088136368759	-0.200861768836662	0.480393900887749	0.824543506620807
Merged-chr7-3442845-4	chr7	3442342	3443342	+	935.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18180.0	NM_133183	54378.0	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	3.22967078791245	3.01475983971314	3.25939437435505	3.24431007878937	3.10648430231823	3.78009983942093	0.916015027288906	0.180249947220308	0.561942210877011
Merged-chr1-65113005-4	chr1	65112514	65113514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9651.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	8.72655453950215	8.97514848106425	8.53963843514567	8.81511462637512	9.26330096649018	8.43378521254751	0.175242803140079	0.528945887457598	0.850598716803661
Merged-chr8-83141043-4	chr8	83140531	83141531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24321.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	7.89617284993401	8.05846942371279	7.67531801592143	7.40766112492869	7.60205705358179	7.31615544118465	-0.632503068294163	0.00900663344374222	0.0936779944483628
Merged-chr15-36648043-4	chr15	36647527	36648527	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39054.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.04282516242941	4.40722213896614	4.49773492562428	4.92707744858737	4.94788795946234	4.64980026562323	1.29041397264007	0.00405877605708889	0.0524903074538782
Merged-chr2-163645815-5	chr2	163645260	163646260	+	972.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	-617.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	7.86800139236314	7.67331084672212	7.74000337398087	7.65082386427584	8.11971681544139	7.62213007808286	0.0932510612542032	0.712653963784995	0.925242852120911
Merged-chr1-135534923-4	chr1	135534414	135535414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	50441.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	6.83924906737209	6.96630297549239	6.68453952363874	6.57031513047949	6.60372786527434	6.82046441948757	-0.282296624060408	0.281503383757538	0.67967073158435
Merged-chr6-116671538-7	chr6	116670942	116671942	+	887.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	2394.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.76769312490229	6.05951326937253	6.45487525763366	7.15490067823044	7.05116545403013	7.00274221443983	0.948954061178786	0.00167587380024946	0.0269461076659241
Merged-chr4-129066489-3	chr4	129065977	129066977	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	L1_Mus2|LINE|L1	8206.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	5.68007791393344	5.67394575505648	5.79354298840214	5.86738797265943	6.07086668628666	5.97452402060301	0.475734715942799	0.11543281365816	0.453656933645588
Merged-chr17-17873643-3	chr17	17873106	17874106	+	803.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	10333.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	5.03313491780412	4.91249298570724	5.29819946957789	4.85212036810443	5.04726967157066	5.71736661889558	0.339621322384597	0.435006921644122	0.798753078814766
Merged-chr19-26666554-4	chr19	26666071	26667071	+	886.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 10 of 32)	intron (NM_011416, intron 10 of 32)	61411.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	3.84169071852409	3.97371203753157	3.92039747975108	3.70915958240745	3.6186309772668	3.73768324226523	-0.746391809335882	0.15551565332443	0.525210913297313
Merged-chr11-82039056-7	chr11	82038539	82039539	+	832.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3462.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	4.33556697880659	4.36402880264354	4.38016152327597	4.90288070635208	4.68932647498743	4.98979313686323	1.20661897824024	0.00429451786739639	0.0548822366319027
Merged-chr7-28347947-4	chr7	28347441	28348441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2748.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	5.75467486231292	5.0645553279568	5.57947385653306	5.74055799199138	5.17076612273756	5.47290077491042	-0.0349738897054057	0.930624246095895	0.984631787156646
Merged-chr9-86479274-4	chr9	86478755	86479755	+	894.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	12101.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	6.91455023778541	6.45190111263854	6.58598630143853	6.6254669629092	7.06857532464188	6.86661047752814	0.314665405301943	0.279963130000464	0.677712405642304
Merged-chr14-122261855-2	chr14	122261355	122262355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	ID_B1|SINE|B4	-28217.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	3.47052543229374	3.33085054399577	3.39507214240779	3.36142963613069	3.21162913852547	3.46588732533484	-0.221952396388977	0.712997963625458	0.925337672624826
Merged-chr1-74437568-4	chr1	74437068	74438068	+	853.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28184.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	6.92165375170917	6.79688286029742	6.06066351217781	6.4939696966118	6.20593006130019	6.09834509733417	-0.608135827535334	0.0754223138045054	0.361630741445505
Merged-chr4-130913292-4	chr4	130912790	130913790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-44.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	8.40697599420275	8.25633803167064	8.24296237190165	8.49249188339747	8.3615018118363	8.02601972996146	0.0113537091747489	0.960679544307384	0.990386809359123
Merged-chr5-115059143-4	chr5	115058639	115059639	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	47615.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	5.09090130230514	5.15611482750864	4.69943880241863	4.75220745391995	4.97449092535188	4.72493342732154	-0.389589296413204	0.34110601106558	0.730686899066382
Merged-chr4-53126939-4	chr4	53126434	53127434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	32961.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.91884947419261	6.93398556815698	6.86918354445039	6.99640184659164	6.81439676861641	6.94167515581452	0.00985168576509704	0.967851896668054	0.992633833139547
Merged-chr17-46163152-4	chr17	46162689	46163689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357745, intron 1 of 11)	intron (NM_001357745, intron 1 of 11)	1125.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	6.26969415619279	6.39437711780633	6.26129202861399	6.53175301732978	6.88210606132374	6.49687926662659	0.560028738942437	0.0467835706124834	0.273714539580438
Merged-chr2-150608572-4	chr2	150608075	150609075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-8.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	5.80588741626073	5.96071583745369	5.87030503498668	5.9974253114693	6.30538794290446	6.09515069448828	0.45777631137378	0.126306305073282	0.47525891975109
Merged-chr7-117470302-2	chr7	117469799	117470799	+	982.833374	f0_balb.idr|f0_c57.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89320.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	4.99057738538642	5.34683441653686	4.88677367455985	4.08108213159887	3.93318156533404	4.27738044252684	-2.58372540972632	3.78783833120352e-08	3.01814372057156e-06
Merged-chr15-85859628-4	chr15	85859124	85860124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168672)	promoter-TSS (NM_001168672)	-83.0	NM_001168672	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	5.3151012480253	5.58938010818415	5.26950254185585	5.44167694879824	5.34210041881443	5.67937745589505	0.149698918862323	0.670270132790065	0.910025735228204
Merged-chr5-110910115-2	chr5	110909615	110910615	+	672.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 2 of 22)	MERVL_2A-int|LTR|ERVL	30312.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	3.50085659245164	3.22508792596235	3.42564713898592	3.29635658222735	3.04935621403002	3.54821061168648	-0.32012162940304	0.622563802246295	0.891197759894683
Merged-chr4-138435228-1	chr4	138434728	138435728	+	553.0	f0_balb.idr	intron (NM_026689, intron 1 of 3)	intron (NM_026689, intron 1 of 3)	556.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	7.17529165173461	7.25345730462536	7.06582950421957	7.6474123613705	7.62180039918084	7.23973400427901	0.521178808741425	0.0361309944654661	0.233778210535187
Merged-chr11-115162463-2	chr11	115161963	115162963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-878.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	7.50848631364988	7.18909675084641	7.35218540670665	7.43701632430619	7.67411315639956	7.37624370389124	0.22530831366396	0.359842262410981	0.746156174508894
Merged-chr3-88772622-4	chr3	88772125	88773125	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018804)	promoter-TSS (NM_018804)	-26.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	3.17091486719485	3.13681100213496	3.07310037651718	2.8895311082902	2.9473451767495	3.02649785629928	-0.815706154320102	0.222860111317712	0.617776133760918
Merged-chr2-37430837-4	chr2	37430342	37431342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	77.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	7.15956124483973	7.41916810928244	7.47727200429424	7.42863222554287	7.50649628589949	7.38938832409502	0.132664672470347	0.576065936059414	0.871496930818991
Merged-chr8-3621418-4	chr8	3620914	3621914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026156)	promoter-TSS (NM_026156)	-118.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	6.22457273391193	6.51984401367114	6.11192126928642	6.49700728875616	6.4440710789194	6.17309418367898	0.130433650399798	0.66022932578261	0.905906890165946
Merged-chr19-5725306-4	chr19	5724827	5725827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	990.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	7.31608225568918	7.56083666600933	7.42606247961367	7.67089256930039	7.78258347762008	7.70514035552545	0.41078577964566	0.0697048366308865	0.345567209627193
Merged-chr5-38561750-4	chr5	38561239	38562239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-144.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	7.71256542176244	7.83260102266891	8.03894239915289	7.82700482747516	7.874354094987	8.01800954175614	0.0615259772873561	0.785831978798914	0.948180961585534
Merged-chr3-27081511-5	chr3	27081029	27082029	+	962.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	72325.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	2.84096206557832	2.82388285960717	3.01929416625592	2.86393409250539	2.68522493507373	2.79420238894512	-0.57264339793955	0.424976996506665	0.792848465017231
Merged-chr2-72984385-4	chr2	72983886	72984886	+	965.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045269, intron 1 of 2)	intron (NR_045269, intron 1 of 2)	-3940.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.02873011489706	3.83984232156898	3.87824203775188	3.84549075608017	3.89434696400151	4.1806627521927	0.162854295528129	0.751583494859509	0.937888126462625
Merged-chr7-16049676-4	chr7	16049128	16050128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22217.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	8.1837771392013	8.19786641318211	7.86331614342376	7.54926733997999	7.79652654650788	7.55584359634556	-0.645149156846939	0.00625872820034929	0.0719701846454759
Merged-chr6-85325284-4	chr6	85324793	85325793	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178639, intron 1 of 13)	intron (NM_178639, intron 1 of 13)	8129.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	3.74820936610491	3.68090106106936	3.64482773272436	3.76290339784914	3.87146696252593	3.91909130991017	0.514124961222104	0.329234625311106	0.721157199685846
Merged-chr13-24613626-2	chr13	24613126	24614126	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-980.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.85109508664988	3.75192213310527	3.48302116079561	3.32854630915708	3.43558075196251	3.49826700113553	-1.04861019996659	0.0753982011560044	0.36159125428477
Merged-chr1-85288064-1	chr1	85287564	85288564	+	555.0	f1_balb.idr	Intergenic	Intergenic	-17498.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.32763006776304	3.11732921271193	3.45059211235321	2.73154870025801	2.60411771370734	3.70948058471547	-0.465575082268756	0.841348091825135	0.962909549034125
Merged-chr16-21477310-3	chr16	21476802	21477802	+	996.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 17 of 46)	intron (NM_001081366, intron 17 of 46)	54184.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.47827129399826	3.36215900671978	3.64620153424591	3.27402921198233	3.05865242327381	3.04556276967292	-1.50613580781204	0.0214950947245622	0.169435756142608
Merged-chr12-33050553-4	chr12	33050058	33051058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 11 of 19)	LTR53B|LTR|ERVL	42317.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	2.93794069546796	2.86398999099025	2.93131408788778	3.30180907375959	3.34824835235115	3.19024245380572	1.72177198591833	0.0107259559123685	0.105544623883202
Merged-chr11-101543294-2	chr11	101542794	101543794	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8661.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	5.50178653017918	5.46779166762495	5.1962516391978	5.088911034952	5.12014853165515	5.08645894109508	-0.616630608279247	0.0818811809334419	0.37857705897487
Merged-chr1-172500718-12	chr1	172500158	172501158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	CpG	412.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	7.71307093249859	7.37014481979883	7.24611868746302	7.6993500871692	7.76711197037463	7.30361775063422	0.216364357808766	0.419677064599083	0.789150628972688
Merged-chr10-67226165-4	chr10	67225666	67226666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001242396, exon 9 of 25)	exon (NM_001242396, exon 9 of 25)	40416.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.09646617372609	5.97769399292933	5.93148097362962	6.16323247023346	6.32408585150832	6.33608307048	0.45482878843211	0.110533966968525	0.444247148071402
Merged-chr2-170246785-2	chr2	170246285	170247285	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104110.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.35863714047398	2.66443685063448	2.64800246346275	2.35822272572226	2.11026675714296	2.60023245181219	-1.18379851669563	0.215493250880376	1
Merged-chr7-136381035-4	chr7	136380523	136381523	+	853.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31608.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	3.79665944220438	3.78463828614147	3.76265020978913	4.39708979323343	4.24681468116627	4.09642532214013	1.4117179124664	0.00492241095932461	0.06057142429806
Merged-chr7-126695349-4	chr7	126694855	126695855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175103)	promoter-TSS (NM_175103)	428.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	5.29069201054806	5.1108804509418	5.4646915541491	5.18536163321484	5.31791844010438	5.41376759348045	0.037997655333094	0.914853011431508	0.980942364567832
Merged-chr2-165945525-2	chr2	165945025	165946025	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47112.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.18191470039589	4.73990989265759	5.11740585674252	5.49963596340007	5.27491944176552	4.80166992022569	0.42728671895038	0.309166579138206	0.704802606494279
Merged-chr4-19706668-2	chr4	19706168	19707168	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	2336.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	4.75887191353069	5.11971087233855	5.16838971140503	4.54849310622108	4.82202381401086	5.07414129055843	-0.435103424026644	0.300538151400139	0.697311691851564
Merged-chr13-45971302-4	chr13	45970806	45971806	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6315.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.96142617201347	5.62933567230732	5.45860680229208	6.17847042324294	6.42481494378335	5.58871851832386	0.722496521515723	0.0542143349740868	0.299023358380208
Merged-chr14-49172094-4	chr14	49171568	49172568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	5.87319654826101	5.62740429593934	5.62245427145195	6.17634192520039	5.45934972305211	5.50794569967907	0.084199391875378	0.821499020850027	0.958023303204974
Merged-chr8-67494818-4	chr8	67494322	67495322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168577)	promoter-TSS (NM_001168577)	-53.0	NM_001168577	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	5.64545048071016	5.84031890083005	5.82300194178521	5.58111473122319	5.52591820776531	5.51103066266506	-0.425926782310873	0.178487767077859	0.559779750571845
Merged-chr3-81039912-4	chr3	81039423	81040423	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3507.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.95603131792974	5.79310435598497	5.74908789149141	5.66189749772509	5.75917156091745	5.59104779073355	-0.290876443336231	0.351030199734963	0.738927106247438
Merged-chr13-93251954-4	chr13	93251447	93252447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51810.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	4.45167355670658	4.5224154606061	4.5075367820032	4.31844887575384	4.48299755844252	4.49088817420206	-0.152366967901077	0.722937418056691	0.9289789921959
Merged-chr10-127381144-4	chr10	127380672	127381672	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 1 of 25)	intron (NM_001359244, intron 1 of 25)	504.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	7.00042631002769	6.5804682429354	6.34847873756198	7.123740929073	6.47640505311784	6.56405265225787	0.120607895221769	0.717658566681882	0.927141395317297
Merged-chr17-4993671-2	chr17	4993171	4994171	+	924.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1403.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	6.55685848324595	6.91204092588141	6.60244136856496	6.76767664978381	6.92102087371823	6.48008044965311	0.0640431773955933	0.821954004672666	0.958041123079214
Merged-chr2-157838901-3	chr2	157838399	157839399	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-75754.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	4.47569142528228	4.53200746447359	4.7558347155598	3.89707521169401	4.08806733888115	4.27080353582444	-1.33563330438828	0.00502549400768773	0.0614581577589184
Merged-chr1-92974788-4	chr1	92974324	92975324	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-523.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	5.72137547587294	5.79704451135121	6.40329874956016	6.17396032497146	6.14944403150754	6.35742690213602	0.389988092444136	0.245833596608607	0.642837179023604
Merged-chr3-132115215-1	chr3	132114715	132115715	+	540.0	f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	LSU-rRNA_Hsa|rRNA|rRNA	29923.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.98878900048533	4.11567838312071	4.33573094886871	4.0494855850474	4.28146121566137	4.09011133825277	0.0140859914701371	0.977001097458723	0.994769134402338
Merged-chr12-70156282-3	chr12	70155813	70156813	+	840.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195033, intron 1 of 12)	intron (NM_001195033, intron 1 of 12)	2142.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	2.86250353918441	3.07197039021163	3.11409153335202	2.65937045735362	2.92881278238828	3.07338346059082	-0.5777220963511	0.432938986035345	0.79758551656855
Merged-chr2-102874120-2	chr2	102873620	102874620	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	27545.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.9958313502339	4.28413979157073	3.72112539123887	3.97893678921864	3.91322581809602	4.32877711909675	0.144277849805379	0.792520409348512	0.949977808464961
Merged-chr15-100228344-4	chr15	100227861	100228861	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007497, intron 1 of 6)	CpG	502.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	8.05227852782671	8.3552168743449	7.93278562653769	8.07765520412119	8.01311439877216	8.04190406891105	-0.124753414889087	0.585731729244344	0.875126871488964
Merged-chr7-135715356-2	chr7	135714856	135715856	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	1023.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.20063683798459	4.82339108814962	5.54453451850757	5.75998400570256	6.09649473968909	5.57970608094403	1.1912638678161	0.00223192847109833	0.033579654281003
Merged-chr4-141139786-4	chr4	141139250	141140250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025608)	promoter-TSS (NM_001025608)	46.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	7.41237602954865	7.26152305054569	7.24127105626439	7.41660838392707	7.64867606124659	7.41185484596173	0.284576172567765	0.227314752533664	0.622402368069924
Merged-chr9-118652015-3	chr9	118651526	118652526	+	798.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	45317.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.89046008632088	6.05801223211139	6.5026277601169	5.9341807409642	5.53268383749161	6.06995410529667	-0.541243694653816	0.122884157549447	0.469055689773584
Merged-chr16-32595383-4	chr16	32594879	32595879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13517.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	5.05875295195597	4.88069613801766	5.10611938568415	4.58126615139786	4.34366215510043	4.86832362662285	-0.95438800692499	0.0240478853922104	0.1823334251357
Merged-chr15-91194193-1	chr15	91193693	91194693	+	801.0	f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-2186.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	4.47841863629584	4.57732649868654	4.56676397771688	4.90640150395543	4.36051222915177	4.826288151102	0.407679721738288	0.359942308732884	0.746219593510366
Merged-chr7-75709450-4	chr7	75708953	75709953	+	778.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-138885.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.94940286069467	4.98571314055554	4.79228749394784	4.77957288338726	4.67960258096208	4.93241624372068	-0.284042551851869	0.468084444322225	0.818329035469349
Merged-chr16-13863642-4	chr16	13863117	13864117	+	772.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	39528.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	5.52656515896231	5.57642831263702	5.84859831156236	5.90298524512072	6.18538417402506	6.09022664616582	0.750153395902909	0.0167912529170415	0.143761181305944
Merged-chr6-135167406-2	chr6	135166892	135167892	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	823.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	7.37210371594945	7.72061020493953	7.17527926230528	7.47953159134205	7.60748437411903	7.16826954427292	-0.0176233170466088	0.948649583315322	0.988151190239158
Merged-chr6-82971275-4	chr6	82970784	82971784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 3 of 9)	intron (NM_033079, intron 3 of 9)	24362.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	6.47144905447061	6.69558023744796	6.25473181217035	6.12895647276954	6.10823613009834	5.66165211418054	-0.828600636229908	0.00927228772579651	0.0955216685759659
Merged-chr11-120517273-2	chr11	120516773	120517773	+	758.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13454.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	3.82726029054065	3.70752479902096	3.78166295591314	3.5878460322366	3.55578516006862	3.99235823209947	-0.184979832650449	0.740125977833076	0.934498753638558
Merged-chr18-6530051-2	chr18	6529551	6530551	+	847.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13943.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	2.31414415765888	2.40010964817607	2.50144576165097	2.50160051314218	2.3892383241855	2.92995208384891	1.26930655427707	0.133841823155349	1
Merged-chr1-106173562-2	chr1	106173079	106174079	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	1710.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.91572760487934	4.07755775654227	4.14535544568216	3.98089748909707	3.78090903889879	4.02980058752359	-0.35723415684821	0.478960483785581	0.823939232913004
Merged-chr13-91509192-1	chr13	91508692	91509692	+	565.0	f0_balb.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48095.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	4.04495302244858	3.97603372047001	3.84215121172135	3.37489564728514	3.49964946734141	3.41411825609383	-1.84487856496155	0.00150746251138915	0.0248283730498156
Merged-chr3-116862734-2	chr3	116862234	116863234	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	B1_Mur2|SINE|Alu	1054.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	4.56670157174941	4.8645353396261	4.8580866463795	5.03669536674715	4.87670240275593	4.46345120714413	0.125434824348416	0.772324751211201	0.943716660313239
Merged-chr19-23057970-3	chr19	23057506	23058506	+	664.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83220.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.92381016329814	5.31146538310863	5.28122047106327	5.28452474450831	5.29046859757194	5.59742510567755	0.418203458315639	0.259566192468088	0.657152794464938
Merged-chr14-75016641-4	chr14	75016129	75017129	+	861.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	602.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.99238618082954	6.93352863191119	6.80306670481811	7.40146026866295	7.19561193324358	6.76494998681698	0.364755350907274	0.188193424144512	0.573639037153511
Merged-chr8-111233958-4	chr8	111233466	111234466	+	947.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	25236.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	6.35321492874714	6.33242277421476	6.26370663091532	6.58693477481414	6.63675731207403	6.10460815392107	0.260100628834214	0.378636839903199	0.761115479892385
Merged-chr5-64381770-4	chr5	64381264	64382264	+	933.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86178.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.56192104602381	6.22382927316193	6.49885799312493	6.31067623743093	6.42491052202855	6.43344465961979	-0.0695404500390328	0.803474997376509	0.953504424667369
Merged-chr11-75625478-3	chr11	75624990	75625990	+	649.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008850, exon 11 of 12)	exon (NM_008850, exon 11 of 12)	-5530.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	4.52550905476354	4.45147689373063	4.91293365051514	4.29855438428999	4.23265035846262	4.50809820866046	-0.73359354423359	0.108417587933225	0.439865944548625
Merged-chr11-120466405-2	chr11	120465905	120466905	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197995, intron 3 of 4)	intron (NM_197995, intron 3 of 4)	1195.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	2.32719894984767	2.12533668344934	2.3645240830533	2.2471114649663	2.06015616574552	2.10744714187217	-0.967427723884118	0.287221110362155	1
Merged-chr16-17467923-1	chr16	17467423	17468423	+	556.0	f1_c57bl6.idr	intron (NM_001277231, intron 1 of 1)	intron (NM_001277231, intron 1 of 1)	15938.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	3.11403406316682	3.12638035343671	3.17562088656657	3.22149279703775	3.34079000641799	3.4672808987201	0.856203275620574	0.171071147097017	0.549046475471744
Merged-chr1-55026863-1	chr1	55026363	55027363	+	1000.0	f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	615.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	8.97907130282429	9.42625705660054	8.80935484964734	8.92798567638792	9.08516517908769	8.95874160767753	-0.151437461292276	0.530164068626164	0.851070276054813
Merged-chr9-21926483-2	chr9	21925983	21926983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	805.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	5.99812470512636	6.37105283419617	6.09039314353065	5.83440880794507	5.98348329970605	5.64599931116336	-0.566772429655682	0.0738498343560291	0.357230909368698
Merged-chr5-92308890-3	chr5	92308424	92309424	+	727.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172713, intron 1 of 21)	B3|SINE|B2	1100.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	3.83788639360705	3.82211640067197	3.61803631263203	3.68584187550467	3.61394580513444	3.39640177987281	-0.65070118779248	0.254609869952411	0.651643384054634
Merged-chr19-55268707-2	chr19	55268207	55269207	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027976, exon 2 of 22)	exon (NM_027976, exon 2 of 22)	15338.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	3.19176257696757	3.07872485855127	3.23506154937002	3.02604023885276	2.81821031085156	3.25133564215924	-0.588858201542895	0.392044739312031	0.770860122611548
Merged-chr14-70963723-3	chr14	70963225	70964225	+	570.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	73618.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.43137658437644	4.47212060364024	4.49687229420226	4.09142169280755	3.92369713641069	4.17360080496909	-1.12802571827966	0.0152817331104963	0.13434917544741
Merged-chr15-51990621-1	chr15	51990121	51991121	+	583.0	f0_balb.idr	intron (NM_009009, intron 1 of 13)	intron (NM_009009, intron 1 of 13)	1139.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	5.27370033235972	5.60201031936564	5.09388941831871	5.74517738120311	5.52608956251181	5.43298696897704	0.426781868273311	0.241346507519114	0.638385260200477
Merged-chr11-79223610-4	chr11	79223107	79224107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19417.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.29703550694269	5.99535497052358	6.14520616580537	6.53843318085841	6.87471865889285	6.59113914358261	0.86613921510053	0.00253727519287239	0.0371496734556618
Merged-chr13-100669790-3	chr13	100669180	100670180	+	905.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_183115, exon 1 of 12)	5' UTR (NM_183115, exon 1 of 12)	199.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	5.12427579651754	5.5595842688393	5.12097553688765	5.36925066551233	5.29574337062978	5.28762706973386	0.0432392378635727	0.906445228153026	0.97873782855567
Merged-chr5-130089365-4	chr5	130088852	130089852	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	9982.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	4.77490941194506	5.11358680783272	4.82481348738477	4.80973139528748	4.9553480062223	4.96468693438807	-0.0186463002219163	0.962232867903866	0.990802868210603
Merged-chr5-137305942-4	chr5	137305447	137306447	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359602, intron 2 of 19)	intron (NM_001359602, intron 2 of 19)	1727.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	4.26486499936052	4.00644572476965	4.3688401051951	4.21837867859918	4.30200644996425	4.35095976875935	0.205754689374088	0.661018135491056	0.906246109292722
Merged-chr11-77377481-2	chr11	77376981	77377981	+	679.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	29201.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.76531565372988	4.92785828257776	4.75604799582754	5.01253505839959	4.91710427704874	5.17525770406187	0.453895446338623	0.239290924763132	0.636076529360692
Merged-chr3-21962486-4	chr3	21961971	21962971	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114181.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.55942262970615	4.55896596835736	4.33769387824013	4.7208506212241	4.59730418008398	4.92661786710911	0.593859798310233	0.165630593075001	0.54080169473335
Merged-chr12-102495904-3	chr12	102495360	102496360	+	719.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013747, intron 12 of 12)	intron (NM_013747, intron 12 of 12)	25950.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	4.45397298708817	4.80570425407574	4.44882166423602	4.49290786885444	4.33266689432251	4.47294165748271	-0.394447467949834	0.373529913607216	0.757492555663504
Merged-chr1-36088984-2	chr1	36088447	36089447	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	RSINE1|SINE|B4	20547.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.42751910359251	5.4192997536087	5.75921234386073	5.27482805403477	5.11329991465306	5.33965598055581	-0.582091538987063	0.09803169425655	0.41740626243114
Merged-chr15-73090793-4	chr15	73090297	73091297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053068, intron 1 of 2)	CpG	385.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	7.83722005313083	8.14100998103243	7.59531245069118	7.89434848536661	7.90028824612597	7.64150538751251	-0.0918752888559895	0.716370218706618	0.926569584146506
Merged-chr7-35056609-4	chr7	35056111	35057111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-45.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	8.54569673419371	8.54614093505436	8.23547816927216	8.55062989720681	8.71593886875195	8.44447671678667	0.171081284317964	0.439610168160451	0.801216871474848
Merged-chr10-7900938-2	chr10	7900438	7901438	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52127.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	2.74409316443067	2.73090548086806	2.77727546166868	2.75328469493209	2.6780773350395	2.84983458124304	0.0418275280408859	0.953735648267548	0.989446911725587
Merged-chr6-136690246-4	chr6	136689779	136690779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28386.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.62282962421354	6.71844534466556	6.80076222533524	7.34830237955643	7.38657195111577	7.43708244962044	1.03041334029659	1.49301877299564e-05	0.000565861370542058
Merged-chr1-143988924-4	chr1	143988401	143989401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15248.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.30242960380462	5.20578685006246	5.52683400692658	5.34992059858218	5.24300330398752	5.85507942808288	0.297378995768615	0.430580675952637	0.796367042714152
Merged-chr15-58346606-1	chr15	58346106	58347106	+	633.0	f1_c57bl6.idr	intron (NM_027211, intron 7 of 8)	intron (NM_027211, intron 7 of 8)	-22437.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	2.74677106711294	2.83288371358348	2.79254990687556	2.78165961783422	2.68844296427551	3.2599334576834	0.661921135363134	0.381341843574717	0.763080052613635
Merged-chr4-144997335-1	chr4	144996835	144997835	+	586.0	f0_balb.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	104198.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.04213244977038	3.27660049406329	3.02306925229654	2.93080097880823	2.5604459376418	3.03674421144099	-1.27248578659957	0.107339854083058	0.437359775948862
Merged-chr5-118407717-2	chr5	118407217	118408217	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153002.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.77290832437989	4.45093956818261	4.2131198302866	4.26922473335748	4.02011810723619	3.97086033671592	-1.10390930671362	0.0266911894149226	0.194383863963785
Merged-chr1-62721551-4	chr1	62721053	62722053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	18236.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	5.88739046931919	5.77155931913786	5.99876989891876	5.60372441204577	5.39835672967797	5.80747869050425	-0.517554623218479	0.111735960631868	0.446450219075941
Merged-chr11-97829561-2	chr11	97829061	97830061	+	869.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-11219.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	8.00294264117767	8.0080169788979	7.67987269502944	7.7896084480861	7.95534647963822	7.42875487498078	-0.226871117676252	0.375068971623921	0.758377211092613
Merged-chr2-121956432-4	chr2	121955933	121956933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008545)	promoter-TSS (NM_008545)	-341.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	7.42970582027929	7.60456422502865	7.59919795292023	7.52780416008405	7.80959290930196	7.5798999139974	0.152896667412894	0.51135125583342	0.841345315498442
Merged-chr16-59560120-4	chr16	59559641	59560641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4389.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	5.43479354170463	5.81428421938707	5.54215706465348	5.83786634706309	6.26516000354846	6.18762631930152	0.8834240762111	0.00803765404693028	0.0863632641964069
Merged-chr12-35889533-4	chr12	35889047	35890047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36074.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	4.83229309475998	5.23890706763601	4.93511257982648	4.6658769962868	4.71924766830711	4.69209621369734	-0.730968760316902	0.0700819760451382	0.34667267479721
Merged-chr1-132312303-3	chr1	132311801	132312801	+	901.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3824.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.93904489412052	5.01242595481347	4.90869810090648	4.74962192808517	4.19046940140097	5.00771171770426	-0.617595900392281	0.181784480725292	0.564357998365423
Merged-chr11-120823469-5	chr11	120822965	120823965	+	933.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007988, intron 1 of 42)	intron (NM_007988, intron 1 of 42)	1082.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	5.52237457622314	5.11848307275167	5.10203881385282	5.22022232857651	5.22953854584062	4.98267364478488	-0.2304233168675	0.543672317224475	0.857551302506722
Merged-chr8-85142741-4	chr8	85142246	85143246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9178.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	6.21340912707137	6.05025141591802	5.97768091005625	5.7976111883798	5.77744852487535	6.06107559998204	-0.373909577879172	0.216779621930743	0.61037688227024
Merged-chr11-49246228-2	chr11	49245728	49246728	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010794, intron 2 of 2)	intron (NM_010794, intron 2 of 2)	-1249.0	NM_001110149	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	4.85484585552348	5.35245791460718	5.55512897825351	5.10042894140185	5.15519605785131	5.31246140328644	-0.182535558193431	0.646170708845187	0.900938614137053
Merged-chr1-152582101-4	chr1	152581626	152582626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43091.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.29993596467857	7.95080388144887	7.75356572695422	7.91540420034798	8.24499380181202	7.73711667750919	-0.051867091967018	0.846238201372271	0.963978208772454
Merged-chr8-70839795-4	chr8	70839345	70840345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-125.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	7.03354457201169	7.02082619820063	6.97145284695267	7.11463915177721	7.27243911009641	7.02954003736852	0.210962414966379	0.381155551609697	0.763032822617589
Merged-chr11-101732894-4	chr11	101732394	101733394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-62.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	6.75146488030519	6.39609119277672	6.34153492865366	6.91502391233604	6.88201244583746	6.4020442831453	0.390276346869417	0.194719189819242	0.582229434450918
Merged-chr12-3874347-4	chr12	3873844	3874844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-12100.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.60232055395731	6.70503849680315	6.710207602829	6.71023180446675	6.94511464825505	6.72132143957829	0.2074861644176	0.419916626429112	0.789364328843158
Merged-chr13-32338739-4	chr13	32338229	32339229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-185.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	6.4685965539012	6.79773085490056	6.68710673260241	6.73684711072868	6.94419975147638	6.40615452541528	0.108640663503847	0.708115808897944	0.923620645882265
Merged-chr17-29268890-4	chr17	29268402	29269402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030561, exon 1 of 9)	5' UTR (NM_030561, exon 1 of 9)	114.0	NM_030561	80748.0	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	6.3300755428781	6.32016002122967	6.48004997664223	6.65530701457324	6.28865852694458	6.35443114331841	0.112305869371089	0.691034073943031	0.918127376764841
Merged-chr5-86086924-4	chr5	86086395	86087395	+	857.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 4 of 7)	intron (NM_001310639, intron 4 of 7)	15149.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	2.81826565889007	2.93296814000426	2.88124134706005	2.70521826361483	2.7465159477246	2.77068136320588	-0.719880684712731	0.315601607153948	0.709860478133366
Merged-chr5-43662683-4	chr5	43662137	43663137	+	690.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 1 of 37)	intron (NM_001359906, intron 1 of 37)	258.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	3.66454950965232	4.05034659326253	3.89261256680662	3.17949295846604	3.259140059728	3.38281381013639	-2.31359274572687	0.000250483311394909	0.00602028173730433
Merged-chr11-54733675-1	chr11	54733175	54734175	+	682.5	f0_balb.idr	intron (NM_178626, intron 3 of 5)	ORR1F|LTR|ERVL-MaLR	54028.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.2871040879897	3.23017942680479	3.31306285256223	3.24280815017155	3.21026593204163	3.32845700867373	-0.0723882248894111	0.905726679168244	0.978476927785487
Merged-chr18-54978842-4	chr18	54978339	54979339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	11341.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.93430600949951	5.76186145308552	5.46125808988936	5.69327644586093	5.91244761817343	5.70189776943726	0.0618108436263888	0.852166266346488	0.96531854415899
Merged-chr11-104441738-4	chr11	104441215	104442215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	GA-rich|Low_complexity|Low_complexity	576.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	8.60651330478385	8.69633612296423	8.55898771155045	8.56370096491775	8.63154826910543	8.79465806793887	0.0564844445813696	0.781546139922721	0.946246819163951
Merged-chr11-101965770-4	chr11	101965266	101966266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1249.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	5.2738524192114	4.38480601067028	4.38129745927298	5.01257988853707	4.82348100813791	4.72637198067493	0.209239823423912	0.679489002734632	0.913863725020095
Merged-chr15-31530233-4	chr15	31529725	31530725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	812.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	7.22227867745127	7.02642695333725	6.86682016941068	7.26715790851122	6.97931630676958	7.0115035848864	0.0590336806935805	0.819556615799788	0.957283576025177
Merged-chr6-86494033-4	chr6	86493524	86494524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5797.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	7.6046546375985	7.32586740092804	7.09820057067912	7.44394717242023	7.5143699750961	7.32939760523289	0.0981481682743569	0.699905521308852	0.920753377048759
Merged-chr9-62344598-8	chr9	62344069	62345069	+	910.444641	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	3226.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	7.78568332862068	8.1175231639914	8.08319794330363	8.01502393221565	8.25589589332885	8.17282990149513	0.212861007771065	0.351723889555233	0.739433218716925
Merged-chr5-120742315-2	chr5	120741815	120742815	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 4 of 11)	B3|SINE|B2	7533.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	2.66590474987146	2.58919689302871	2.81705185150974	2.41360051652111	2.50981084001926	2.94555585439829	-0.2792920465303	0.733889349890704	0.932325051544019
Merged-chr9-107986575-4	chr9	107986070	107987070	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	-654.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	4.7545840411488	4.60443923170622	5.15068038568264	4.82068925453597	4.83349187436474	4.84749596631994	-0.0213856816660575	0.958842211676615	0.990162613547306
Merged-chr1-134098378-5	chr1	134097905	134098905	+	869.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12837.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	7.68740457182521	7.70959852402161	7.49087627690731	7.3744817620144	7.66802696147831	7.39901844055178	-0.208329003512638	0.380986311512712	0.762943872639242
Merged-chr17-32609630-2	chr17	32609130	32610130	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-11689.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	3.14226107591841	3.11241146851743	3.15727324446879	2.91357366712623	2.9446059024859	3.17219841871187	-0.579091023612225	0.384245630374616	0.765372305782707
Merged-chr9-7184533-4	chr9	7184048	7185048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357483)	promoter-TSS (NM_001357483)	43.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	7.97230453207654	8.04639960028176	7.81127248479247	7.90981685906123	7.89302160082075	7.591924287737	-0.19740375531163	0.391066917023868	0.770112153342334
Merged-chr18-50096762-4	chr18	50096241	50097241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31460.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	8.24067985601825	8.61257123123526	8.21877874175333	8.28013131540934	8.6389646341812	8.20107871710757	0.0271799908964954	0.912787750474353	0.98045882839308
Merged-chr12-85378830-2	chr12	85378330	85379330	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.13936327259007	6.08108457816955	6.22725077386868	6.16821848347646	6.1121606732901	6.76628690229329	0.374152568833357	0.245762768564502	0.642821080898342
Merged-chr17-72962755-2	chr17	72962255	72963255	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	44450.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.16082817672502	3.08043495397466	3.29353406380777	3.28956671503983	3.09624639899266	3.13701650996919	-0.000368408925246524	0.999541228821644	0.999920050950963
Merged-chr11-87031046-4	chr11	87030562	87031562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37300.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	6.01084355422686	6.05292104879556	5.82995018535285	5.51979969997146	5.7449855329288	5.73715615549605	-0.541617482178545	0.081387058669627	0.377399374597767
Merged-chr7-19332977-4	chr7	19332481	19333481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12090.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	5.96904817421051	5.79397876742963	5.35197633932301	6.21803001022799	6.40323534617182	5.900871665176	0.788262533311069	0.0245563419007827	0.184845675491255
Merged-chr7-45154398-4	chr7	45153862	45154862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278207)	promoter-TSS (NM_001278207)	59.0	NM_001278207	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	8.68817941611698	8.89924609290189	8.67591479002876	8.67294656653823	8.78095213302048	8.42821400911846	-0.165011421670147	0.449724680847504	0.808012616706586
Merged-chr5-139437694-3	chr5	139437201	139438201	+	870.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	14522.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	4.85442775547179	5.21246405502016	4.93797639011158	5.12836452753377	5.05169321426026	5.42010160353851	0.380651482326651	0.326127271668329	0.718551386027045
Merged-chr10-37279483-2	chr10	37278983	37279983	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140557.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.45366052800053	3.18318689629547	3.29481869290989	3.46737633217157	3.31119891863359	3.18778854028509	0.0529301908595796	0.932797533136674	0.98531684549485
Merged-chr4-12088000-4	chr4	12087512	12088512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177861)	promoter-TSS (NM_177861)	-5.0	NR_110955	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	6.30964974635261	6.45057118609586	6.10671620153481	6.55527222010122	6.87805365227288	6.90720297995625	0.771265274576829	0.00676347311864542	0.0762464532253419
Merged-chr3-83841114-4	chr3	83840597	83841597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011905, exon 2 of 3)	5' UTR (NM_011905, exon 2 of 3)	511.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	8.50727998526369	8.39853332653537	8.12213543201177	8.27659169213677	8.68251036652036	8.12765233983497	0.050200667461526	0.843426603355919	0.963439737682953
Merged-chr6-140751188-4	chr6	140750684	140751684	+	961.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	124299.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.26456451236418	6.70774763878959	6.45133039876846	6.55520209621324	6.76696346380715	6.29407285025277	0.117856094229877	0.695049875403779	0.919230570201314
Merged-chr17-47502200-4	chr17	47501698	47502698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	93.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	7.76347013320656	7.546540810867	7.36752949123136	7.77946349065984	7.72006351851632	7.60230113930322	0.186383375629712	0.432303529230381	0.797278260882748
Merged-chr6-97371552-2	chr6	97371052	97372052	+	737.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	87734.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.8778357077717	3.7568627251407	4.12135796625627	3.69083412446272	3.80185157367224	4.10147876604673	-0.157807880890989	0.769684235559389	0.943195032067652
Merged-chr7-80166923-4	chr7	80166443	80167443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19898.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.69359961261761	4.33059516145644	4.36989525388563	4.077298834444	3.70550058039328	3.960284135248	-1.60161652516448	0.00168834635305674	0.027104750790111
Merged-chr1-40412600-3	chr1	40412088	40413088	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-16982.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	2.53853527238934	2.81042915094211	2.88909774187568	2.54308849910819	2.49824858664965	2.78662551087372	-0.776257570991268	0.326343916005565	0.718659876645344
Merged-chr13-113359075-4	chr13	113358591	113359591	+	991.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	143753.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.0739021381478	5.30492834042704	5.22355387689729	5.53812461055483	5.83837036109249	5.93493288586514	1.09478450943305	0.00152593791155631	0.0250236976241185
Merged-chr12-109507876-4	chr12	109507359	109508359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33137.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	3.25891582428792	3.14752986792244	3.16927364261801	3.46411945179237	3.34899256374836	3.46975372675579	0.931835303326274	0.128622930065901	0.479743640706484
Merged-chr5-130161832-2	chr5	130161332	130162332	+	788.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9987.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	2.4697264544444	2.46858297084587	2.65491134183176	2.57681052035158	2.5348626417233	2.54150184334869	0.129880081422018	0.867158831336636	1
Merged-chr8-81343057-2	chr8	81342557	81343557	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	495.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.19971078994082	5.18995521547518	5.10780690786763	3.9779999545391	4.01325927244941	4.36641072620758	-2.67973313839516	4.45291810799321e-09	4.39002855367179e-07
Merged-chr1-181126928-4	chr1	181126401	181127401	+	861.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 10 of 22)	intron (NM_026171, intron 10 of 22)	17303.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	5.59925072025997	5.60775020200987	5.6242827782016	5.85475772727142	5.85733438698591	5.74069128427867	0.389557751411306	0.204451497176369	0.594962496294183
Merged-chr8-88652970-2	chr8	88652470	88653470	+	576.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145857, exon 2 of 13)	exon (NM_145857, exon 2 of 13)	5623.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	3.41727396967049	3.1779635127645	3.48698253986187	3.52651393931589	3.57695142248014	3.76052582497995	0.958368522118739	0.10859742798667	0.440273571814211
Merged-chr9-7577551-4	chr9	7577042	7578042	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 5 of 9)	intron (NM_001310717, intron 5 of 9)	6146.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	3.50917326041498	3.55878991260452	3.67200101438333	3.91510999907411	3.69318391201477	3.63550061400253	0.607819605494055	0.271236138571702	0.668493724068427
Merged-chr8-82940128-4	chr8	82939601	82940601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	76745.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.68364991138801	6.75989460729505	6.64321045724829	5.97464906680591	5.94720873211527	6.43271139047089	-0.944195634525257	0.00122233826217207	0.0210707110252358
Merged-chr2-24346500-3	chr2	24345923	24346923	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039701, intron 1 of 3)	intron (NM_001039701, intron 1 of 3)	1052.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	5.18973318904499	4.96471364032535	4.75947204744902	5.33334548483409	5.30559055178046	5.33182620465868	0.67270846290911	0.0722790376754072	0.353157446871531
Merged-chr8-108731020-4	chr8	108730526	108731526	+	839.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	16382.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.61473840099	4.2279711011676	4.6375255139213	4.19071662344631	4.14676890089274	4.38448441784414	-0.691983698214384	0.139754360460276	0.499513781150286
Merged-chr7-141455091-4	chr7	141454597	141455597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	-91.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	7.7390686490572	7.64692001350098	7.6716824856627	7.58717025883194	7.69569686802953	7.54879732436008	-0.102693000156146	0.639145479810576	0.897935351850988
Merged-chr2-61711688-4	chr2	61711223	61712223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021526)	promoter-TSS (NM_021526)	29.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	7.54397548258373	7.62393656517012	7.30872983832687	7.40687471064215	7.27459446144578	6.81610790193393	-0.449127586280504	0.0984475826773746	0.41841029007527
Merged-chr1-138131334-4	chr1	138130776	138131776	+	901.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	43850.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.95704690757163	5.1226585009499	4.96676045206575	5.10696038496161	5.09111224045951	4.88131273351178	0.0349737650116249	0.92548698467266	0.983209542798957
Merged-chr4-136149199-2	chr4	136148699	136149699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5377.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.02809991434158	4.82162249502367	4.61646549977478	5.00517250369462	4.80757740670677	4.72722846738409	0.0261493997837572	0.948970774056505	0.988169196639905
Merged-chr6-43637397-4	chr6	43636885	43637885	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	28893.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	5.16555188645108	5.41981962825776	5.19746382780447	5.19461932537691	5.12804240468139	5.01674061422471	-0.31030774753045	0.389586561086912	0.769244170164916
Merged-chr1-93485473-4	chr1	93484957	93485957	+	865.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 1 of 12)	intron (NM_001159719, intron 1 of 12)	6396.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	5.30556295298851	5.33364458818083	5.30276113749537	6.1560740826008	6.5887247941502	6.0173140264907	1.74847892898068	1.65409556580845e-07	1.11132247771214e-05
Merged-chr14-31377545-2	chr14	31377045	31378045	+	754.400024	f1_balb.idr|f1_c57bl6.idr	exon (NM_011894, exon 7 of 9)	exon (NM_011894, exon 7 of 9)	40132.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.97196936697681	5.67378779063421	6.3674491068899	5.92894582528462	6.19193403463694	6.44374847084035	0.298628939766658	0.387632572167766	0.767699601678856
Merged-chr14-14843244-4	chr14	14842747	14843747	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 7 of 34)	intron (NM_001195229, intron 7 of 34)	22432.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.32962794360024	3.4900414813199	3.61451220601809	3.05442883599277	3.0959663738655	3.37553848902293	-1.23882312077684	0.054700308183008	0.300379625847683
Merged-chr12-8913172-4	chr12	8912588	8913588	+	790.303589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8219.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.59991068925097	3.90626769406236	3.76957788052765	4.22115328353563	4.21461538955229	3.94770668764186	1.13156527232249	0.0314554561941492	0.214871159921416
Merged-chr10-75860938-4	chr10	75860460	75861460	+	751.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	-710.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	4.19714996859426	4.31154416675404	4.32431719996421	4.24735471527116	4.0608405239724	4.34835798069352	-0.17014696749704	0.71405679555259	0.92568727653408
Merged-chr1-166139003-2	chr1	166138503	166139503	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8782.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	3.51504658054717	3.81969907299362	3.41613237106021	3.51143688116176	3.2560150503272	3.30999880614552	-0.887678014383132	0.15041935949943	0.517247822505929
Merged-chr8-41239539-4	chr8	41239042	41240042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023662)	promoter-TSS (NM_023662)	-217.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	7.66150579305492	7.81277192439656	7.5208786520715	7.88645982529917	7.72930644165578	7.60708179845953	0.105377896859235	0.650516174720986	0.902615790875857
Merged-chr3-59309869-3	chr3	59309380	59310380	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 42 of 43)	MLT1C|LTR|ERVL-MaLR	34376.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	4.01338180815562	4.20304050007633	4.21647479504106	3.77765085021358	3.28576892983035	3.59173459712025	-1.94296254870012	0.00100889270476703	0.0181430612012655
Merged-chr3-8975063-1	chr3	8974563	8975563	+	588.0	f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-10917.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.25623450800343	4.20395492445156	4.54760847495359	5.0753935688525	4.81712641559683	5.05412626219102	1.56237666981213	0.00026594809290825	0.00632257397563133
Merged-chr1-161501467-2	chr1	161500959	161501959	+	632.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	Lx|LINE|L1	6802.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	6.81526972488275	6.82115490985073	6.65431009385889	6.7124985907052	6.88720934737208	6.38041984212115	-0.123638916761684	0.656704867276211	0.904693205515276
Merged-chr9-118913234-4	chr9	118912737	118913737	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13299.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.37091117394779	3.30877685827787	3.39818508506042	3.1835229683347	3.05498774620814	3.5204097594157	-0.401562365798473	0.531717496366833	0.851792887243639
Merged-chr4-144929664-2	chr4	144929164	144930164	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36527.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.19007046393063	3.38967466020871	3.48477860510562	3.25944715967534	3.16525327900622	3.60449380360358	-0.0330316058743395	0.958638924753365	0.99015359851262
Merged-chr9-45546625-2	chr9	45546125	45547125	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-115393.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.59137031948484	2.70366331492441	2.72053683561907	2.95169733534976	3.0448177792405	3.03933677670974	1.79503621713481	0.0152100541434056	0.134010820114834
Merged-chr2-166714864-3	chr2	166714378	166715378	+	780.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1046.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.12953697085699	5.13694734497532	4.88019388570801	5.34453037548977	5.47504634329852	5.2720295787088	0.625095857596218	0.0829776939603431	0.381101063037602
Merged-chr2-145804778-4	chr2	145804280	145805280	+	864.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	L1MB3|LINE|L1	18664.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.31515974399777	5.34519918886471	5.36077368735654	4.80324998986122	5.14883275495816	5.27289144769368	-0.516160861265932	0.162837453657115	0.536188662408322
Merged-chr10-79797764-1	chr10	79797264	79798264	+	571.0	f0_balb.idr	intron (NM_023128, intron 1 of 8)	intron (NM_023128, intron 1 of 8)	4192.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	3.86627910590731	4.01879894594778	4.39528229069829	4.44841965988328	4.17156086768444	4.82392379486729	1.0518766247073	0.0436332861059042	0.262481092416142
Merged-chr12-11230517-1	chr12	11230017	11231017	+	646.0	f0_balb.idr	Intergenic	Intergenic	-21569.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	3.09231107511606	3.08839444525529	3.50014817653646	2.74802779756026	2.80176203773211	2.78994835590606	-2.23294498592666	0.00347546696486743	0.0469382657381414
Merged-chr8-3309718-3	chr8	3309190	3310190	+	681.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-30073.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.56775708392579	4.67054707087932	4.50988582216863	4.42158502943411	4.31331514707861	4.69544677191651	-0.283167929150073	0.516152410746623	0.844051513295388
Merged-chr15-95851132-1	chr15	95850632	95851632	+	596.666687	f0_c57.idr	intron (NM_001253813, intron 2 of 20)	MTB|LTR|ERVL-MaLR	-21060.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	6.23296932806825	6.62808708940389	6.39253734737845	6.64125716251235	6.83401505890686	6.5447896427802	0.406421780634777	0.15120905384397	0.518506648409409
Merged-chr5-21055464-4	chr5	21054927	21055927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	CpG	484.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	7.88140254518763	7.8059242227543	7.98435095472565	7.99339289322671	7.82614034706317	7.96675885478093	0.0556253023587089	0.796927404506375	0.951572880317229
Merged-chr4-88412571-4	chr4	88412067	88413067	+	871.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025760)	TTS (NM_025760)	26359.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.215308029933	4.20394002634391	4.02360944380277	3.93676787893652	4.1937175339765	3.88674935020258	-0.379805796352938	0.449714463846129	0.808012616706586
Merged-chr9-106438391-4	chr9	106437880	106438880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276442)	promoter-TSS (NM_001276442)	-144.0	NM_025371	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	5.90207420901265	5.70857809598834	5.93984643467964	5.77034320979606	5.71480458498583	5.78460081509946	-0.170301432752916	0.578886578911236	0.872437129840066
Merged-chr7-34132628-4	chr7	34132129	34133129	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207212, exon 1 of 8)	exon (NM_207212, exon 1 of 8)	639.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	5.62995272943175	5.26356818614738	5.31310159103923	5.54273511198472	4.84114312500169	5.10763841104383	-0.435133766309899	0.283198125284167	0.681169665885673
Merged-chr10-80664598-4	chr10	80664108	80665108	+	994.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021462)	TTS (NM_021462)	-7537.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	6.42799409255627	6.3642453407191	6.31196932809125	6.22427139510635	6.4789900237597	6.3123917021103	-0.0365490191109325	0.894412827070274	0.975492876249979
Merged-chr8-46849059-4	chr8	46848514	46849514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109269.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.91242985122143	7.11512940890929	6.7326697413931	7.2276024392656	7.49164243596973	7.03380306627783	0.507048729182734	0.0608834283478504	0.319729072912919
Merged-chr1-180762330-2	chr1	180761830	180762830	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36287.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	4.81943977577726	4.57058966827665	4.73750981392556	4.60251007444842	4.19512725488358	4.90897909059551	-0.292037521273582	0.530368338583649	0.851100828257122
Merged-chr10-24149247-4	chr10	24148764	24149764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-25.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	7.3762750283157	7.28733499562104	7.33827880970094	7.36890684902062	7.38424254352134	7.35140363157823	0.0519528047179674	0.817082791261518	0.956754861188725
Merged-chr8-25785277-4	chr8	25784749	25785749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026121)	promoter-TSS (NM_026121)	-40.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	6.60836896979217	6.62187929097468	6.92337268972288	6.76662553915644	6.75258061365071	6.70388252634112	0.0416250894939077	0.873324830105878	0.97040331531529
Merged-chr6-88826794-2	chr6	88826294	88827294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15141.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	6.39646178125342	6.07832345290136	6.03249917840229	6.59002950850571	6.61310092175948	6.14129546473806	0.47723795504565	0.121752325307949	0.466829283395647
Merged-chr7-31168584-3	chr7	31168080	31169080	+	908.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046062, intron 3 of 3)	intron (NR_046062, intron 3 of 3)	6222.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	2.33502620086849	2.74836150495853	2.48037930605114	2.20350466536519	2.02031360176574	2.21984850263969	-3.22113442210458	0.00356015440471066	1
Merged-chr5-99240754-4	chr5	99240274	99241274	+	970.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	12153.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.59406988391638	5.72093342791238	6.06361284449143	6.02913676348401	6.04424767985781	5.8491057523614	0.332401295048206	0.29828384774876	0.69500092474273
Merged-chr10-30620063-4	chr10	30619568	30620568	+	899.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1702.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	5.05016696644789	4.66088250110112	4.92713514855852	5.12654146935034	5.20308615988622	5.13246300776795	0.574503873757248	0.133783682786289	0.48906330450363
Merged-chr15-38515418-4	chr15	38514906	38515906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	3860.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	5.1951939743059	5.16508287103757	5.02990058412776	5.05396702042041	5.07804532504773	5.26063610558714	-0.0222662050998396	0.95084102469097	0.988501616477738
Merged-chr2-127135459-3	chr2	127135019	127136019	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-1565.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	2.39762250459241	2.48328822364701	2.52251051315078	2.58874950460332	2.56158551977094	3.12083607101575	1.72440311892363	0.0386047584558294	0.243543283880743
Merged-chr6-108197313-4	chr6	108196812	108197812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11729.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	4.14432057836577	3.78942192561449	3.95942216825907	4.32236865090972	4.15338521250242	3.97860740607718	0.54585891946528	0.283890678101248	0.681514542091937
Merged-chr11-76482842-4	chr11	76482379	76483379	+	893.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11616.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.4484119720051	7.61285568649256	7.52647090049547	7.36866075289671	7.65819256363049	7.47266442078005	-0.0307714070641731	0.895121192435366	0.975651613572988
Merged-chr4-123745206-2	chr4	123744706	123745706	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	5093.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	3.04663112862365	2.83663111921553	3.06772538091338	3.19996932067283	3.18183892181475	3.31018196043215	1.09160719178747	0.101409312588849	0.424674255939937
Merged-chr19-11917568-4	chr19	11917064	11918064	+	917.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	5165.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	6.0583050190197	6.11902380486622	5.98567629978799	5.97905254757617	6.06959798270559	5.76958351396187	-0.177556482440597	0.551631489472914	0.86136002432184
Merged-chr11-107482252-2	chr11	107481752	107482752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	B3A|SINE|B2	2724.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	4.47748606738931	4.46274715923818	4.45263197970715	4.55164647184097	4.86010443848526	4.2367007043587	0.309904787777783	0.502022999527865	0.836215913534744
Merged-chr18-67824865-2	chr18	67824365	67825365	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	24758.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	2.92466410241701	2.81850669253747	2.80917831194233	2.84379210221905	2.86512999371731	2.94301487391045	0.143910036295582	0.836489723463086	0.962001762335242
Merged-chr6-115901807-3	chr6	115901308	115902308	+	873.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30119.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	5.50907406132804	5.16000553580924	5.20641660775042	5.08490526437301	5.13060394075885	4.78415564617654	-0.586326229517228	0.12744912874278	0.477202010311607
Merged-chr9-107542102-4	chr9	107541583	107542583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019720)	promoter-TSS (NM_019720)	110.0	NM_001357290	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	5.36906496407729	5.49178858727841	5.52133557787384	5.48051647972486	5.28447624624264	5.28240221654817	-0.207858317764067	0.538316249731352	0.855080856348593
Merged-chr10-13303353-2	chr10	13302853	13303853	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20936.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.19562323961503	3.74515189551232	3.98104987582596	4.17016599956367	3.75605142980266	3.84656114205216	-0.155632379256974	0.775272496495265	0.944594834759211
Merged-chr10-99443648-4	chr10	99443145	99444145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165526.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.86222961291991	3.82490437420487	3.67342843255113	3.53670049309946	3.63629084760703	3.46219082341403	-0.822540947638533	0.142222016079289	0.503446333443608
Merged-chr1-86505458-2	chr1	86504958	86505958	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21099.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	3.43114004467861	3.06094163007049	3.17590552827802	3.53839462211998	3.33381965906857	3.3679396115694	0.711066233873353	0.267543191588532	0.664791268994708
Merged-chr8-69094359-4	chr8	69093894	69094894	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-5172.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	5.0531161628328	5.46938375997008	4.96587391806825	5.34625712120816	5.257229015133	5.1757324498195	0.138867792498927	0.715633961553603	0.926418424807894
Merged-chr5-66122795-1	chr5	66122295	66123295	+	545.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-24616.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	2.92746711189663	2.80754604576848	3.8011352310236	2.9208713055967	2.95071539453245	3.20119121766357	-0.922650240125479	0.245140081805365	0.642381314494918
Merged-chr3-136896456-3	chr3	136895941	136896941	+	858.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	226375.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.19972636589126	3.23194836276996	3.31787684402148	3.40412208525334	2.93835623689582	3.54703240439914	0.272138392109868	0.688248956370089	0.917193226920892
Merged-chr9-40764226-4	chr9	40763719	40764719	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-37054.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.05760223305053	5.0598931201611	5.16190200973072	4.38077000361011	4.24746660740258	4.58407877250225	-1.64739046775952	7.22647207434807e-05	0.00214980439171381
Merged-chr17-28085131-4	chr17	28084626	28085626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4487.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	4.00758411620471	3.56739170038721	4.1267581353569	4.78817102973093	4.79955666551314	4.09591585261003	1.86486482274197	0.000888845470002583	0.0164426531498388
Merged-chr14-57729598-3	chr14	57729076	57730076	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4842.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	4.52934554816525	4.25680643132332	4.55083834044698	4.42051407773307	4.57716859107761	4.83924559353519	0.416200093711533	0.349951186488552	0.738024035618792
Merged-chr6-53589529-2	chr6	53589031	53590031	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16157.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	7.31584131090128	7.47569858168823	7.19003519704375	6.90444508505294	7.14993233450562	6.68198833667808	-0.597964093652382	0.0244418967971532	0.184284283136782
Merged-chr8-127439944-4	chr8	127439488	127440488	+	969.125	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	140336.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	3.54233604158318	3.32454560041607	3.84339390511817	4.91400632507345	4.70176821537322	4.58210447869458	3.80739561171954	5.21471702782921e-10	5.96024964906062e-08
Merged-chr10-17215209-4	chr10	17214705	17215705	+	953.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119423.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.04083589476035	5.30399046952803	5.19746481247178	5.51686302416158	5.64732877808	5.51014379662825	0.739797191270665	0.0310824705507978	0.213471634535112
Merged-chr6-92293187-2	chr6	92292690	92293690	+	950.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-48540.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	2.31602139722861	2.15453884734747	2.77017815822678	2.56347492007129	2.36072826330451	2.95535663473676	1.0182752383466	0.519852518147655	0.846048097455962
Merged-chr3-96905781-2	chr3	96905281	96906281	+	623.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	-483.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	4.74854448088844	4.73573412401581	4.63166253826875	4.97971593516602	4.93942266547548	4.69927918155116	0.398533739189933	0.316047503204723	0.71019071166749
Merged-chr17-50504678-4	chr17	50504174	50505174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4873.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.8948831976438	5.477387916123	5.60449844771332	5.77604961532662	5.80388926971319	5.49000144560308	0.0588959614507705	0.862140962166669	0.967996224966109
Merged-chr9-107743309-2	chr9	107742808	107743808	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_153190, intron 21 of 23)	intron (NR_153190, intron 21 of 23)	27694.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	5.12706372212963	5.07419016103253	5.15300823297477	4.9141537575029	4.95527291852934	5.084561018333	-0.287283769262326	0.430969651997312	0.796623566289661
Merged-chr6-120915042-4	chr6	120914535	120915535	+	853.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1789.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	3.16118409523119	2.9429765694415	2.91292572463356	2.89818563861919	2.9359815906202	3.10534613298268	-0.162625735766183	0.813295775612631	0.955940138311315
Merged-chr17-87540114-2	chr17	87539614	87540614	+	980.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-93179.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	5.06973952425609	5.15395318793163	4.66188458019187	4.20488967293385	4.04293068986105	4.32847024966887	-2.01928599813399	8.95441788237938e-06	0.000363576630747532
Merged-chr17-33915388-1	chr17	33914888	33915888	+	552.0	f1_c57bl6.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-788.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	4.0648390755979	4.38957376537925	4.83449529381378	4.4400344708827	4.58220050321162	4.76080253615853	0.340977011792964	0.486768805107978	0.827985697457807
Merged-chr13-113595663-2	chr13	113595163	113596163	+	988.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22901.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.91191791239017	4.54737026767944	4.80308238827422	4.91409047197375	4.97192007027646	5.08059191582287	0.503137529553039	0.205946465965861	0.596518913737799
Merged-chr17-17890272-4	chr17	17889754	17890754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2430.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	6.16146192181872	6.47870327562356	5.99623256825567	6.60780384335389	6.31566308664428	6.12943372484615	0.218795577504362	0.48724515316561	0.828377944172883
Merged-chr1-93444470-2	chr1	93443970	93444970	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	1231.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	5.90124285419255	5.39958815676461	5.52912707108776	5.38946805654919	5.44515123786568	5.82505022915521	-0.139334912191804	0.700998971370977	0.921101025027024
Merged-chr4-39614761-2	chr4	39614261	39615261	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164468.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	4.17639572438247	4.52853245821185	4.44882403612151	4.60175475919462	4.92001963164917	4.33332136716115	0.639703366239059	0.173959216309899	0.553189356180945
Merged-chr5-96896226-3	chr5	96895716	96896716	+	788.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25056.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	3.10795727987196	3.24643596160835	3.0628871565582	2.87592812593456	2.73626629153967	3.13527737290133	-1.06252809246979	0.136905840871664	0.494310206464419
Merged-chr13-91804640-2	chr13	91804140	91805140	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145453, intron 2 of 5)	B1F2|SINE|Alu	3056.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	2.19130374251621	2.1960164763017	2.47010124627351	2.01550291714356	2.21729084973609	2.42181837187768	-0.423680759344844	0.65020712666245	1
Merged-chr9-123800002-4	chr9	123799477	123800477	+	892.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 15 of 17)	G-rich|Low_complexity|Low_complexity	-6500.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	3.93404164662392	3.92858386269327	4.18121659306765	3.66684820165013	4.08865124609681	4.07074819738961	-0.164027054235523	0.75678166226676	0.939700773811652
Merged-chr4-3695725-4	chr4	3695236	3696236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	MTEb|LTR|ERVL-MaLR	17615.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	6.01646388763802	5.67068152024224	5.80280515917961	6.15922693236502	5.81871644220481	6.03195650366297	0.291717899881248	0.358965766064188	0.745248163965501
Merged-chr2-144337435-4	chr2	144336934	144337934	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-5354.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	5.33606485146561	4.99536827945661	5.09313872855168	4.91298291867517	4.97994848160981	4.69853563980148	-0.5833288394706	0.13636170194621	0.493353820687576
Merged-chr4-148041118-4	chr4	148040634	148041634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-55.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	5.97754924072059	6.02083442757182	6.3647186160621	6.34080214036961	6.43372299906062	6.65726263355101	0.593164334822483	0.0444079971971215	0.265471702764429
Merged-chr13-91460963-4	chr13	91460444	91461444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024186)	promoter-TSS (NM_024186)	-153.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	6.17850550077895	5.99938968870114	6.06171966941912	5.71554659364777	5.32870829581903	5.71763741069545	-0.888764531058694	0.00580626312832094	0.0681036851397419
Merged-chr14-73172703-4	chr14	73172187	73173187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29902.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.55710711118854	7.57106861188955	7.29343991469176	7.35751214629336	7.67828946474896	7.42919176881095	0.0226203960483005	0.92624153231599	0.983383377195576
Merged-chr17-35059788-4	chr17	35059288	35060288	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016765, intron 1 of 6)	intron (NM_016765, intron 1 of 6)	753.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	3.18504805199398	2.94869005642733	3.1173949197018	3.28629056736129	3.06382244624662	3.4121265173593	0.718081811326959	0.278404776820392	0.675623815920472
Merged-chr4-86686894-3	chr4	86686474	86687474	+	851.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16915.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.48500666485559	3.23619740165012	3.12725305978333	2.88961522303114	2.88647791470086	3.01705350908328	-1.70239429853726	0.0146373386920057	0.130358950859939
Merged-chr8-122430419-4	chr8	122429921	122430921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2519.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	8.50576689929892	8.27186688261459	8.146310572634	8.46182565317914	8.52786524614801	8.16018974554315	0.108291606828539	0.64197912895368	0.899271200656464
Merged-chr10-111996069-4	chr10	111995572	111996572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	1192.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	6.25713897827906	6.27859733364645	5.75748115167295	5.39341249806513	5.86551479120227	5.71060073257557	-0.794722806607375	0.021907492785516	0.17159735100228
Merged-chr8-125176538-1	chr8	125176038	125177038	+	553.5	f0_balb.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122343.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.22235318131114	3.72812094503689	3.35361982055818	2.82780955197445	2.80087636175967	3.13721178013578	-2.50898389414352	0.000987566960904544	0.0178300997463221
Merged-chr5-65868696-2	chr5	65868196	65869196	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	5127.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.91299805492327	7.11140531330939	6.43664572168514	6.47713698085658	6.50608059535894	6.4774940551632	-0.592467771302904	0.04348816034033	0.262049860966283
Merged-chr12-85392589-2	chr12	85392089	85393089	+	805.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17872.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.00702968022472	5.78310085388043	6.30032208115832	5.83365582012856	6.09152047587737	5.89745650718463	-0.14599509542095	0.649996268585049	0.902467704262052
Merged-chr14-74906164-4	chr14	74905677	74906677	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	41700.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.42546141569106	4.17228612754303	4.39393371888172	4.67417918603192	4.33480474780259	4.50398337594984	0.449664479165648	0.320350225832948	0.714227957211971
Merged-chr19-59036948-3	chr19	59036459	59037459	+	961.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	39110.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.38027530956307	4.14965547128814	3.86615934648128	3.93389856980029	4.17825830843802	3.93810517273912	-0.366249798707992	0.483525195731072	0.826261772459923
Merged-chr11-55470628-8	chr11	55470089	55471089	+	990.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	837.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	7.60093289757536	7.48080512585955	7.06069672528108	7.42297639265119	7.31273914467682	6.81572731355973	-0.280982616986153	0.335918297858856	0.726040046969705
Merged-chr2-160252130-4	chr2	160251623	160252623	+	969.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	75371.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.66535369387471	5.88403229278213	5.68590451686709	6.07547456526499	6.03244519545387	5.69285559335363	0.356952480757537	0.261689120245031	0.659457534066706
Merged-chr8-116264641-4	chr8	116264145	116265145	+	851.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240370.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	3.74797138037249	3.89415167597718	4.22266743691633	4.31203598221539	3.8269317701781	4.20337439404057	0.477735795892891	0.37503072797033	0.758377211092613
Merged-chr11-80176020-4	chr11	80175529	80176529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-7843.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.50823640097667	7.28308639237584	7.80506959485649	7.62154609870529	7.82067243491988	7.4173659857907	0.136613234180917	0.603527404564207	0.882664398336881
Merged-chr3-88058414-4	chr3	88057904	88058904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144897)	promoter-TSS (NM_144897)	91.0	NM_144897	246703.0	Mm.205996	NM_144897	ENSMUSG00000028070	Naxe	AA087124|AI-BP|AIBP|Apoa1bp|Apoa1ip|ESTM37	NAD(P)HX epimerase	protein-coding	5.09111101605675	5.20455087820023	5.39011632547617	5.18057734190599	5.09202712511143	5.00083441056685	-0.267134106084563	0.462515514329309	0.815273593730977
Merged-chr17-65730123-4	chr17	65729626	65730626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42626.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.89343612602545	6.80201682338632	6.77293447897094	6.75440200007801	7.01247753401564	6.89106301435071	0.105632192772151	0.674868444728429	0.911865018776908
Merged-chr6-97857905-4	chr6	97857388	97858388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	50830.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.85445983554174	5.76036750851044	5.89771179255874	5.82107205514779	5.5615878911077	5.95857003407432	-0.102946596332114	0.745900930792919	0.936251303305737
Merged-chr12-55450561-4	chr12	55450069	55451069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	42078.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.95755974036906	5.63915991386314	5.59576551031962	5.77786928785266	5.76664620046038	5.54102911930474	-0.0749819830171993	0.819595165927776	0.957283576025177
Merged-chr10-13502494-2	chr10	13501994	13502994	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 1 of 6)	intron (NM_025799, intron 1 of 6)	1466.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	3.99575144966522	4.16576283863789	4.01303470515552	3.90522909321706	3.49692212772075	3.98629565736068	-0.799741179882502	0.14404024211668	0.506679870421043
Merged-chr8-111642736-5	chr8	111642275	111643275	+	906.3800050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	-668.0	NM_001037665	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	6.39116717657751	6.70931889076126	6.51251128930361	6.39308071618682	6.84686692885558	6.30222417904416	0.00797002370170275	0.979061681452796	0.995160277495735
Merged-chr2-117123551-2	chr2	117123051	117124051	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	2480.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.17375297758962	6.28972426929303	5.98932807671233	6.26645778964292	6.34435649247406	6.53178763902631	0.354697971754383	0.217359433637116	0.611180175523018
Merged-chr11-96765834-4	chr11	96765347	96766347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11708.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	7.43761600661011	7.41965098160493	7.33961480588395	7.05814490740247	7.44915721825878	7.61560657010762	-0.0133306535546966	0.958653391948051	0.99015359851262
Merged-chr17-34644726-4	chr17	34644236	34645236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-147.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	6.38675277433633	6.4447032632363	6.26351435502998	6.35497649008557	6.5804616687758	6.5308757689197	0.197476226444729	0.46727453365536	0.817892453953778
Merged-chr1-125466827-4	chr1	125466335	125467335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31108.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.53409322246534	6.39179502076543	6.4887237614449	6.80792624482392	6.71384393964852	6.92204485615201	0.538286964242649	0.0376085464606612	0.239758805845748
Merged-chr9-50553785-4	chr9	50553266	50554266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357222)	promoter-TSS (NM_001357222)	-104.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	6.06131554806314	6.08994387035811	6.21655282898376	6.20421091329831	6.71961708379585	6.33685162389759	0.549206038871265	0.0688192350379154	0.343221703969963
Merged-chr2-129300666-1	chr2	129300166	129301166	+	635.0	f0_c57.idr	3' UTR (NM_010554, exon 7 of 7)	3' UTR (NM_010554, exon 7 of 7)	3296.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	4.2154207188681	4.27334317029898	4.47881445166895	4.56386506628281	4.65577076657328	4.70285738284647	0.813851344714647	0.0595324677534464	0.315843040992919
Merged-chr4-148069932-4	chr4	148069440	148070440	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	18124.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.55999371616436	4.51796196257922	5.0859600311816	5.29001271638036	5.39030599804771	5.08340123233198	1.15910595645418	0.00496308591370118	0.0609098012842548
Merged-chr18-73753014-4	chr18	73752514	73753514	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	PB1D10|SINE|Alu	1465.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	6.23862836463761	6.46222104757039	6.43480894246553	6.58809468614667	6.49959448935073	6.84342911131577	0.422338971028139	0.128066852463168	0.478707399984916
Merged-chr15-81155465-3	chr15	81154966	81155966	+	744.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	35291.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.43596967330236	4.65851682940202	4.79564640375282	4.34369465088335	4.24430929711966	4.56234992560363	-0.632293654240004	0.155852681935103	0.525912186557138
Merged-chr13-52235742-2	chr13	52235242	52236242	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	139001.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.54875244549308	5.64934471870987	5.01090341824514	5.28496130125289	5.30864329522179	5.39023569992878	-0.236164458136581	0.528648956082076	0.850585575598857
Merged-chr9-44396213-2	chr9	44395713	44396713	+	831.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-714.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	7.77634310613854	7.64256033202859	7.28232218116194	7.3264816635726	7.5876536050999	7.08183976884451	-0.339322065807324	0.213627973086503	0.606777825041193
Merged-chr13-91636993-4	chr13	91636510	91637510	+	936.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-104511.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.71271991168857	4.95889526617678	4.42208318784687	4.55082082080737	4.45213180226356	4.49110290254551	-0.556297293494305	0.205566831186504	0.596131993192832
Merged-chr15-59951375-2	chr15	59950875	59951875	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65243.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	4.81950905110683	4.70483264618774	4.84938104484893	4.76275333962164	4.88848969786715	4.91434411312634	0.152171910842396	0.695262054419099	0.919230570201314
Merged-chr1-173737178-4	chr1	173736670	173737670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4639.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.3622598580779	7.42430391775718	6.95634315128843	6.84997949666406	6.8885202936673	6.94309668764661	-0.577072365111025	0.0259336050359322	0.190929340632618
Merged-chr13-45255465-4	chr13	45254956	45255956	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134286.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.51185796532295	3.35056810864699	3.38887088940418	3.22189861571844	3.13329676005988	3.17119137685968	-1.00858007357465	0.104843518723986	0.432054705729044
Merged-chr5-121584330-4	chr5	121583832	121584832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	9492.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	7.00245676439283	7.04606102569528	6.9006589733183	6.92485483193651	7.15893728423581	6.94459131237842	0.0490818410762741	0.842626034030409	0.963146698164766
Merged-chr17-29070147-2	chr17	29069647	29070647	+	563.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	RSINE1|SINE|B4	8979.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	3.81764632598408	3.93490263937834	3.82429222706496	3.81846108680432	3.78359641536032	3.62510665827715	-0.360778204345371	0.494848739616808	0.832128327998775
Merged-chr10-98805246-4	chr10	98804746	98805746	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109396.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.48262564721504	4.4810958958946	4.68862843142141	4.34040678454362	4.21246610411584	4.48158988471415	-0.53197339034124	0.228414532632912	0.62353323156456
Merged-chr8-104334047-4	chr8	104333558	104334558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6536.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	6.83037178874155	6.90077561863686	7.13409781449708	6.63649702213157	6.9075977410538	7.18003610295164	-0.052641709500296	0.849433081823667	0.964672542888897
Merged-chr19-8983497-4	chr19	8982980	8983980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5804.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	5.92950746141032	5.59189267186051	5.79899696112117	5.24268985145161	5.40348156416884	5.65929393685705	-0.640119693179655	0.0611984820089603	0.320796915307427
Merged-chr15-5518121-2	chr15	5517621	5518621	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21803.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.89584492958258	5.22585872223977	4.65342969112875	5.01317492108468	4.95075824408931	5.07060995163314	0.103089103714023	0.799609285723559	0.952263864378888
Merged-chr1-184023260-4	chr1	184022767	184023767	+	866.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10731.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	5.57135292764323	5.78588950688838	6.04810310278987	5.77716273160428	6.03581613909538	6.14943785171168	0.331833932637845	0.309895659438374	0.705462734304293
Merged-chr15-95823008-2	chr15	95822508	95823508	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7064.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.61363841374217	7.23782011557655	7.04844866789904	7.46664099767909	7.58336005458747	6.99185368653139	0.0767800699108422	0.792697767576536	0.950032655975256
Merged-chr7-80799395-3	chr7	80798896	80799896	+	818.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	3935.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.10014930962406	4.00026785746585	4.12826925958005	3.94481624612072	4.09271993365132	4.28260590107918	0.0971519271189287	0.841866289512899	0.963002495523594
Merged-chr2-18765812-4	chr2	18765331	18766331	+	984.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4969.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	6.83219374494871	6.51701585389467	6.40705668415992	6.51372616305754	6.97301724085397	6.52391248206493	0.149993521484583	0.617868390990771	0.889003221204315
Merged-chr1-171681121-3	chr1	171680503	171681503	+	663.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360767)	promoter-TSS (NM_001360767)	-989.0	NM_007649	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	4.77507333440837	4.85680531998423	4.87929604236512	4.65157739196397	5.20501933885696	4.87028694658876	0.234672090691824	0.569980423718548	0.869007092802201
Merged-chr13-113436462-4	chr13	113435953	113436953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	66391.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.4499142276398	5.25498129051907	5.72613446260649	5.8115315193911	5.33818519957146	5.73813611478882	0.296625718449919	0.414416052520088	0.785805817831719
Merged-chr11-98937608-4	chr11	98937104	98938104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-92.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	7.80300965367531	7.58805295056433	7.58382171754044	7.6731490469846	7.60386891181934	7.35721440847281	-0.155748775110478	0.50928685989572	0.84026772146894
Merged-chr13-113865948-4	chr13	113865442	113866442	+	612.470825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	71434.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	2.32815394796728	2.16247128955985	2.36561429978032	2.09978881989074	2.18293809388139	2.11112595506915	-1.09382624646544	0.225782307709704	1
Merged-chr16-10970147-2	chr16	10969647	10970647	+	780.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	B2_Mm2|SINE|B2	22974.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	6.00532854062573	5.95100605729488	6.00114229760983	5.8967711666504	5.99535689526621	6.03940267989743	-0.0140545094849081	0.96135420489461	0.99051531523293
Merged-chr14-75186436-4	chr14	75185934	75186934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50009.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.67761890171338	6.40965587775782	6.79966362484432	6.77186827171237	6.69838573922861	6.799338684962	0.194632304898143	0.466279259952266	0.817498201823315
Merged-chr12-3890025-2	chr12	3889525	3890525	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-1719.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.89396741048181	4.9285597974468	4.82068056302926	5.01947805401532	4.92795800067663	4.80845274400923	0.0887686805089066	0.815938152611482	0.95655688968801
Merged-chr1-85601023-4	chr1	85600521	85601521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013817, exon 1 of 17)	5' UTR (NM_001013817, exon 1 of 17)	318.0	NM_001013817	434484.0	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	6.93016871179477	7.21159243251559	7.03506670426436	7.09296106525123	7.07032204684014	7.26319377716477	0.110844951428814	0.654222595086004	0.903721257917462
Merged-chr17-24251446-4	chr17	24250943	24251943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007634)	promoter-TSS (NM_007634)	-34.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	5.62926642188387	5.53795547721533	5.30139080175392	6.75132342473573	6.65005294082482	6.68196420014191	2.01545372016085	3.60282479708412e-11	5.25015491621323e-09
Merged-chr8-126565398-4	chr8	126564860	126565860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28076.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.65972975152474	7.50046673827852	6.70708078310931	6.9682819766014	7.02607489608055	6.27591654123012	-0.828861601173342	0.0217052721995059	0.170494882391814
Merged-chr3-87372182-3	chr3	87371754	87372754	+	750.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-4133.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	4.00723451100104	4.03505144135447	4.29307666016042	4.19411408531865	4.42779087310447	4.63651770993807	0.857138770886016	0.0733319866255966	0.355811297635002
Merged-chr2-68796217-4	chr2	68795715	68796715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65226.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.24605257815251	5.41533580914389	5.3619425377166	5.29553939648953	4.89361166121283	5.36547347780013	-0.311611686295128	0.402028508959772	0.77787096574423
Merged-chr8-119425825-4	chr8	119425314	119426314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11348.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	7.41068142843793	7.6805285283413	7.54624471967264	7.58605639731393	7.68644199279934	7.18913111682737	-0.0534337342185381	0.83429593214544	0.961273502395445
Merged-chr18-5320314-4	chr18	5319810	5320810	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	L1M4b|LINE|L1	14129.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	3.86517323492766	4.06498797085483	4.0111418235935	3.40127319531918	3.65938565687295	3.79034009404747	-1.17504960691777	0.0355791221737355	0.231630357392393
Merged-chr6-129418134-4	chr6	129417634	129418634	+	742.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 4 of 6)	intron (NM_001205363, intron 4 of 6)	9272.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	4.81778573481851	5.02619170840221	4.99146675381657	5.13036040844829	5.2924767928651	5.12611896895189	0.516105785132274	0.1615821858932	0.534604100133116
Merged-chr12-12229759-2	chr12	12229279	12230279	+	875.166626	f0_balb.idr|f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-32360.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.78230599882086	6.799200490467	6.63160042825998	6.52070330278412	6.87579153457636	6.81677081743796	0.00725623088234076	0.978232737117131	0.995070777384379
Merged-chr1-128642440-4	chr1	128641930	128642930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50131.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.46598808878877	3.21646998300768	3.56761296056824	3.24430013513945	3.09818024032079	3.37654933761256	-0.728835457830014	0.250580799713606	0.647988537855291
Merged-chr12-69513386-4	chr12	69512870	69513870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37820.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.91829342995693	5.04695025103771	5.11905220816609	5.72173505827964	5.78941325913601	5.56149006226501	1.33126323800776	9.89333769243259e-05	0.00280957284202024
Merged-chr2-6711266-4	chr2	6710764	6711764	+	921.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	L2|LINE|L2	10398.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.64385602157028	5.72615239651479	5.72631016000834	5.5670060306884	5.52767230807756	6.03981414810721	0.0370333989829644	0.912638116149409	0.9803740348902
Merged-chr4-132601491-4	chr4	132601003	132602003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	37436.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.115541375431	6.72131668121667	6.78082888444385	6.67304439297373	6.85827308654414	6.62785223382611	-0.246323359973848	0.36601896051202	0.751084013570845
Merged-chr14-70212079-2	chr14	70211579	70212579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4408.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	7.15438640581244	7.50703829153878	7.21639811614869	6.9078401240624	7.18108504250952	6.80851435854283	-0.48117034697988	0.0702261023297379	0.347137974374908
Merged-chr1-135147539-4	chr1	135147030	135148030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026823, intron 1 of 6)	CpG	696.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	8.42682349711901	8.74326818468933	8.36485761091032	8.31946270353525	8.3882481647799	8.30507272848908	-0.261533194157251	0.235995284638916	0.632279217060081
Merged-chr3-115793508-4	chr3	115793047	115794047	+	942.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78492.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.92992089193012	2.96298013001832	2.96735907689788	2.92335329032204	2.89982366661622	2.79212113073686	-0.374179948184288	0.588890627991268	0.876650937479947
Merged-chr16-45657804-3	chr16	45657280	45658280	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172455, intron 17 of 17)	intron (NM_172455, intron 17 of 17)	-3662.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	2.95268586210753	2.9464417091839	3.23551814698354	3.16671063072825	3.24971835033521	3.46477495381196	1.0825923584301	0.103257960171176	0.428352196127392
Merged-chr1-84317960-4	chr1	84317480	84318480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33335.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.33988809919466	5.63849389410257	5.60428547299043	5.2218815942663	5.38293601700989	5.58642613747809	-0.256899118365162	0.459950266008354	0.814054033257842
Merged-chr5-92441661-4	chr5	92441169	92442169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-6470.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	6.86333202987909	6.57297943205607	6.72862263240661	7.09415268448161	7.35797501825466	6.80355568360064	0.597965705030945	0.0318704355162324	0.216461937673224
Merged-chr4-62662258-4	chr4	62661764	62662764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11710.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.35213785629596	5.98040140462815	5.9804659266696	6.33333204339926	6.04136310444982	6.46721570644685	0.269533418046039	0.390039386891163	0.769429833183019
Merged-chr8-60994476-2	chr8	60993976	60994976	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293639, intron 1 of 31)	intron (NM_001293639, intron 1 of 31)	1283.0	NM_175089	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	3.50863377013797	3.49072038234684	3.32459279756235	3.32129063736187	3.41114963267689	3.5077104362746	-0.136957604101359	0.817158513277337	0.956754861188725
Merged-chr12-3264578-4	chr12	3264070	3265070	+	928.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 2 of 5)	intron (NM_016676, intron 2 of 5)	28779.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	4.13095123262443	4.43867953618888	4.30084960846078	4.225573797651	4.26382739319009	3.92556816795578	-0.384325837403441	0.432922097185868	0.79758551656855
Merged-chr6-116472771-4	chr6	116472284	116473284	+	873.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11606.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	3.11377019450979	3.18545371815385	2.98199707185243	2.96494714518005	3.09137904826469	3.11466277885065	-0.191489420720923	0.773037493202473	0.943967710106858
Merged-chr17-26939650-4	chr17	26939164	26940164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026307)	promoter-TSS (NM_026307)	-126.0	NM_026307	67675.0	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	8.11403820627635	8.11004124714244	7.81902787975226	7.9588089754899	8.06618333519276	7.77084593600019	-0.11896890934725	0.605497718885005	0.883581756351046
Merged-chr10-125314258-4	chr10	125313761	125314761	+	947.5750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-5445.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.45755002915822	5.41975295809756	5.04914366345196	5.11541596355006	5.23423658822925	5.49838698678887	-0.0964399973094616	0.794754412085208	0.950867819055357
Merged-chr6-128829963-3	chr6	128829484	128830484	+	706.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.74076238075852	2.99385766009672	2.86824791292169	2.69105008306073	2.70723816219833	2.75675527627553	-0.812061712052694	0.267577857453089	0.664794074914354
Merged-chr19-11950068-4	chr19	11949563	11950563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-15781.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	4.19824263306166	4.25271362350666	4.24977761379435	4.54572490462951	4.54977041851355	4.65540763958167	0.897169878819661	0.0393840600387933	0.246488820436849
Merged-chr12-80046792-4	chr12	80046298	80047298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	66215.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	6.47073794880141	6.35795535503036	5.79477183281641	6.09785900297179	5.89595919066743	5.4559888172472	-0.678826663758394	0.0623298921943115	0.324450776959917
Merged-chr10-118812143-4	chr10	118811662	118812662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56741.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.80925687417673	7.70521184827536	7.44885650402784	7.78329800230116	8.15619061518315	7.53781333604335	0.276908479875989	0.299894831903043	0.696626983785131
Merged-chr11-98029696-2	chr11	98029196	98030196	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009078, intron 4 of 5)	intron (NM_009078, intron 4 of 5)	2772.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	2.31811530743318	2.24833386320696	2.30579409134047	2.37896270742509	2.21163683943025	2.69182925809843	0.929825724332643	0.284221587332184	1
Merged-chr18-39319421-3	chr18	39318895	39319895	+	698.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167850.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.16619849934493	3.05354744925132	3.2340026060753	3.39737840346223	3.4157110109515	3.62640323278154	1.33878697838041	0.0320868098829817	0.2174700070655
Merged-chr13-99184231-3	chr13	99183748	99184748	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	-575.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	5.40768314016529	5.47547627999984	5.07866578191317	5.43382411882143	5.47223895126984	5.21673731590735	0.0836715427712433	0.815456979650571	0.956370078970016
Merged-chr8-46841790-2	chr8	46841290	46842290	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	102045.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.13135666382202	5.98491948044488	6.05832993146062	6.04626743217651	6.30326149852992	6.41687486491931	0.341208734412955	0.243535835528542	0.640776628186919
Merged-chr2-129634464-1	chr2	129633964	129634964	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	39002.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.6713324796938	4.47466703921643	4.51052472781703	4.38333427138314	4.22385942300331	4.53599208043897	-0.458036754356422	0.298785473556354	0.695489982940998
Merged-chr16-24487844-4	chr16	24487351	24488351	+	906.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	39760.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.36082518351842	3.36662793514038	3.10169055719364	3.24910468218811	3.03020127645565	3.23538595611044	-0.488165001386962	0.452359636024693	0.809370729412253
Merged-chr3-109352206-2	chr3	109351706	109352706	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	11523.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.14738134408255	4.02277835394717	3.81469054401863	3.65917861194531	3.35012033715761	3.72701059881005	-1.43296808800335	0.0121700083444408	0.115361364128985
Merged-chr8-72320292-4	chr8	72319784	72320784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008452, intron 2 of 2)	PB1D7|SINE|Alu	1222.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.38430973651003	6.99751447240793	6.88804439851228	7.26581675194058	7.30677212574197	7.61245121043912	0.422142163977632	0.121106343674352	0.465429617313542
Merged-chr5-148674467-1	chr5	148673967	148674967	+	568.5	f0_c57.idr	Intergenic	Intergenic	-67373.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	2.79826417119823	3.0327858145439	3.11708681372268	3.42660508983025	3.45185166223615	3.67580796777981	2.33316257463464	0.000891322464971349	0.0164811465922969
Merged-chr1-194989208-4	chr1	194988697	194989697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12238.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	3.87366502164131	3.92163982673778	4.01736176707909	4.0540282357382	4.14680044897829	3.98885899696701	0.40654216363892	0.407886262576169	0.781926100186554
Merged-chr1-64308727-4	chr1	64308239	64309239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-187350.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.90068385588618	6.83603198695865	6.55347862380161	6.43723049729467	6.6422289268905	6.64681845400688	-0.320109061932772	0.234616746214623	0.630738593875039
Merged-chr6-91719625-2	chr6	91719125	91720125	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	35558.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.72688860172921	2.55712771883933	2.83386919732312	2.54257471934147	2.41950500163382	2.60412529846499	-1.09060113558032	0.168390822695176	1
Merged-chr17-26236595-2	chr17	26236095	26237095	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B1_Mm|SINE|Alu	7647.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.17361083703021	7.13512107679099	7.34141824904797	7.46833026597476	7.77372677658107	7.08068058103206	0.396379431323327	0.149937549181637	0.516540537088794
Merged-chr18-12169574-3	chr18	12169102	12170102	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 2 of 19)	intron (NM_029623, intron 2 of 19)	872.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	5.27217037050995	5.44297797198262	5.61943364635239	5.52875640988187	5.63746711193644	5.75726286724735	0.373503813229119	0.263460073209554	0.661383847170923
Merged-chr4-101284090-3	chr4	101283568	101284568	+	749.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18786.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	2.49528251989137	2.51316485239392	2.63411801768281	2.35203581350465	2.22112675563538	2.45915048170875	-1.34162335333697	0.113129852604421	1
Merged-chr11-73137623-7	chr11	73137050	73138050	+	747.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010353, exon 1 of 1)	exon (NM_010353, exon 1 of 1)	744.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	6.08259574260629	6.48147851663241	6.35320209753705	6.54764379766233	6.55373939053958	6.4130494595912	0.315263446335518	0.266708010674982	0.664172509867066
Merged-chr2-155473292-2	chr2	155472792	155473792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32509.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	6.95780344013308	6.38866685191299	7.03243625058818	7.05252179671607	6.51121620954176	6.75723079616568	-0.0436880379563687	0.890530275080652	0.974528422443459
Merged-chr18-35707944-4	chr18	35707439	35708439	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4795.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	3.94706867624839	3.8506277424113	4.22309098279891	4.14201226119519	3.95225434661597	4.11307765609183	0.180397509797119	0.719687107058171	0.927940011453118
Merged-chr5-72254493-2	chr5	72253993	72254993	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	51150.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.28351873319333	3.08552199542246	3.38591979429986	3.12318496683822	3.17817688878465	3.29437469507322	-0.228167452978158	0.720196227049124	0.928071578828455
Merged-chr6-115375853-2	chr6	115375365	115376365	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001308354, intron 1 of 7)	Lx8b|LINE|L1	13516.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.91912853274198	5.94564553426318	5.54203776429155	5.86736749469592	6.17931830989332	5.60624095051363	0.168208105211544	0.626690955375963	0.892916235446326
Merged-chr15-81422238-2	chr15	81421738	81422738	+	649.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	intron (NM_177310, intron 2 of 8)	-13965.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	5.50668455619551	5.81579552309297	5.973290548884	5.88052724131599	6.00706128958874	6.05574069474117	0.374631512939045	0.240124420995405	0.637109682764418
Merged-chr5-112327325-2	chr5	112326825	112327825	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018783, intron 1 of 13)	B1_Mur4|SINE|Alu	956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	4.69555688425582	4.76618752060013	4.56952771143192	4.96251196548489	4.87786121110958	4.68039732835934	0.378559815390922	0.347651588106138	0.735700597497696
Merged-chr1-105356582-4	chr1	105356087	105357087	+	791.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151538, exon 1 of 2)	non-coding (NR_151538, exon 1 of 2)	123.0	NM_178779	320311.0	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	2.61348860510319	2.50768407013017	2.69979537844149	2.52460397191496	2.49284901012132	2.71233946094368	-0.17710121577869	0.818803145330021	1
Merged-chr11-29810541-4	chr11	29810036	29811036	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	15132.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.38626822389788	5.34833239583345	4.8747216914062	5.09720628451398	5.27556166623432	4.77278306007618	-0.319225301705728	0.437027080652636	0.799765712162923
Merged-chr3-105686538-1	chr3	105686038	105687038	+	955.0	f1_c57bl6.idr	intron (NM_017397, intron 2 of 10)	intron (NM_017397, intron 2 of 10)	1033.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	3.34942105665506	3.69402261339304	3.30200162452021	3.65408640772302	3.42398287274513	3.43516523640426	0.148141933009795	0.809778118818838	0.954796906768851
Merged-chr5-32937110-4	chr5	32936556	32937556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	73335.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	6.1439786650984	6.22997924396977	6.43639961154064	6.44307502319458	6.68467451563956	6.36534183902171	0.404296238174582	0.154489044184385	0.523836159179075
Merged-chr9-119339145-2	chr9	119338666	119339666	+	798.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010851, intron 1 of 5)	intron (NM_010851, intron 1 of 5)	874.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	4.91933190099532	4.74518286340844	5.44236462534391	5.45270799638832	5.08621660214288	5.55702421361355	0.642064054609162	0.124066140603704	0.471361829475961
Merged-chr4-146173629-2	chr4	146173129	146174129	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177545, intron 2 of 4)	RMER17B2|LTR|ERVK	15939.0	NM_001177545	667666.0	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164	zinc finger protein 600	protein-coding	3.06737677822314	3.17591096892845	3.05591109858463	3.10690907021863	2.95921496025522	3.18648984488838	-0.0952553609818638	0.884816197366459	0.973538624783452
Merged-chr2-181680838-2	chr2	181680338	181681338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356342, exon 1 of 10)	5' UTR (NM_001356342, exon 1 of 10)	541.0	NM_001356342	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	4.17852948549341	4.26551198661549	4.43869581868353	4.14566632933172	4.19654915244118	4.54346970542176	0.0131912766177139	0.977687210663694	0.994893491053568
Merged-chr19-7016641-2	chr19	7016141	7017141	+	784.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	2828.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	3.75462394468723	3.81768615365457	4.11869941233797	3.91976672523372	3.89645413631646	4.18557964507157	0.31168970419778	0.550355296441051	0.860699816966477
Merged-chr12-85590257-2	chr12	85589757	85590757	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8848.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.19139482055587	3.98030711179674	3.67358848047757	4.12832185783604	3.86534498820212	4.53715456730685	0.649138739409838	0.255725320784291	0.652762828432113
Merged-chr11-103965760-3	chr11	103965280	103966280	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-945.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	7.43705602105919	6.98368644472402	7.0783041959627	7.20347099676263	7.56137707804957	7.49962972440509	0.365362329334193	0.17177665034974	0.550097814813575
Merged-chr3-96498470-2	chr3	96497970	96498970	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-26715.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	2.40728157628541	2.47500763404608	2.68100564929483	3.15555064570368	2.9590292760155	3.12387322209002	3.58191428057786	0.000140247134513417	0.0037595630053455
Merged-chr6-72938089-4	chr6	72937579	72938579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20153.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	4.97808550596795	4.65796584216936	4.30799100285678	5.26265914740246	5.33853617084813	4.88987773891941	1.07066185710107	0.018466056789837	0.153299775852415
Merged-chr4-155848079-2	chr4	155847579	155848579	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356381, intron 1 of 15)	intron (NM_001356381, intron 1 of 15)	677.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	5.16272664475278	4.84021863384513	4.81672237618877	5.07371097935437	5.01594373818994	4.84374100538363	0.0651518854047006	0.867993869544717	0.969567248353181
Merged-chr2-4493339-4	chr2	4492818	4493818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-66436.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.4724003726346	4.34801198715796	4.47247345441196	4.87166532502828	4.83841945749751	4.62482188185007	0.880155028347249	0.034698070829074	0.228367457756827
Merged-chr11-20469441-4	chr11	20468954	20469954	+	865.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73799.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.49931375779217	5.28876006304004	5.74734365567697	6.05188599901262	5.66093855804808	5.92804649227804	0.681593336978832	0.0464184629744362	0.27265791584864
Merged-chr7-30425464-2	chr7	30424964	30425964	+	885.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172142, intron 4 of 10)	intron (NM_172142, intron 4 of 10)	2189.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	2.11380267612463	2.23854611207993	2.32383657988701	2.32956370016025	2.34106695543453	2.4617562020167	1.0296527437687	0.231391062357571	1
Merged-chr11-116129344-2	chr11	116128844	116129844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	1784.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	4.83272944099415	4.47739491089931	4.23349670545812	4.48335178731818	4.55118218483161	4.61946936143037	0.00191152401578705	0.996677890390497	0.999127275997073
Merged-chr9-123985094-3	chr9	123984592	123985592	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6684.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	5.33432694947541	5.78439073519062	5.5902196263903	5.57717615021455	5.80684649070467	5.78399027650337	0.261891012370043	0.439610396684938	0.801216871474848
Merged-chr15-39608854-5	chr15	39608310	39609310	+	988.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	Lx2A|LINE|L1	-50701.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	4.87464518855079	5.22405696744617	5.14129540813949	5.02380437015875	4.81132600721575	5.10683304160305	-0.236436144022013	0.54116375819708	0.856765739682368
Merged-chr8-11549862-4	chr8	11549382	11550382	+	883.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359137, intron 2 of 14)	intron (NM_001359137, intron 2 of 14)	889.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	5.30559921700616	5.60860915442892	5.12109829407777	5.34298275655062	5.51187492098699	5.25681134885412	0.0185284201887138	0.959565699987945	0.990233913483689
Merged-chr17-31073978-3	chr17	31073456	31074456	+	930.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16262.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	8.28469819100473	8.20970325381225	8.14994198821814	8.14597376183804	8.31636984264348	7.5883239965525	-0.215733752568082	0.412570867359764	0.784551818322662
Merged-chr16-96081541-4	chr16	96081026	96082026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145125, intron 4 of 41)	intron (NM_145125, intron 4 of 41)	902.0	NM_001103179	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	6.91158616164124	6.81048867859877	6.56928155941464	6.62545823777742	6.50530353974793	6.57597394806514	-0.336003148805326	0.20319918322992	0.593047970473348
Merged-chr16-22265426-4	chr16	22264929	22265929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	CpG	576.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	8.84586225543295	9.15483088284702	8.75264094637325	8.62709539622458	8.94667393820562	8.94930943658568	-0.113974361870318	0.620040778408943	0.890023686663772
Merged-chr10-81135256-6	chr10	81134742	81135742	+	918.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-1029.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	6.98746159770325	7.02230088630343	7.4620558794667	7.44521205246113	7.60462514280133	7.58570905155957	0.565323258377526	0.0274911699822778	0.197674150698701
Merged-chr5-135962641-4	chr5	135962129	135963129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 9 of 10)	CpG	11847.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	7.06268069808344	7.15703438606716	7.10864043486849	7.19637115331623	7.2938824935005	7.15375863453109	0.165238627354719	0.479414880000318	0.824248472737287
Merged-chr1-91045013-1	chr1	91044513	91045513	+	658.0	f0_balb.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-8431.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.21160769921765	4.68172059871273	4.64245386308341	4.86953832872555	4.88061740132725	4.98315601039589	0.0575546566594662	0.891934421120832	0.974942585822634
Merged-chr6-33859791-4	chr6	33859279	33860279	+	930.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 13 of 17)	MLT1J|LTR|ERVL-MaLR	-169669.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.60963001460084	3.92615046065278	4.08811101858543	3.89209801150108	4.0592891820739	3.87021278515003	0.199628742194597	0.710320943307645	0.924293540432205
Merged-chr2-174330376-1	chr2	174329876	174330876	+	1000.0	f0_balb.idr	exon (NM_001310083, exon 2 of 13)	exon (NM_001310083, exon 2 of 13)	287.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	8.36566625721862	8.249861729601	8.10381085612613	8.38619611036967	8.10124888235386	8.30359432516668	0.0262453996229118	0.905324140233408	0.978279198518346
Merged-chr3-130061796-2	chr3	130061296	130062296	+	723.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	-889.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	3.83661874305854	3.83235866198864	3.79412680193901	3.64912163420955	3.76247278201164	4.0982702359053	0.0615087644327201	0.908915702386313	0.979371911685275
Merged-chr7-116336371-4	chr7	116335859	116336859	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011083)	TTS (NM_011083)	-2169.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	3.39398936580501	3.43624005483684	3.37303192570371	3.43262166349056	3.35992017863506	3.49907096178657	0.0935370664610852	0.872908733723877	0.970341735343892
Merged-chr15-74954298-2	chr15	74953833	74954833	+	688.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164036)	promoter-TSS (NM_001164036)	-718.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.71876604867542	4.54736823878318	5.14605894691822	5.051469322097	4.77485860013787	5.01740106744427	0.296429551277358	0.48509270596818	0.827336504644498
Merged-chr16-33573434-2	chr16	33572934	33573934	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	54839.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	5.45007995483024	5.6902963194639	5.27412298806896	5.69820236200817	5.99568620529678	5.75807844984102	0.616672868265414	0.0698944256110787	0.34616008503931
Merged-chr13-30658491-3	chr13	30658002	30659002	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1557.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	4.23198495100719	3.95904212774704	4.11017109637325	4.17244029609224	4.28808373244111	4.03172835598018	0.200589828076857	0.679918151470619	0.914056767175611
Merged-chr7-35066119-4	chr7	35065631	35066631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9565.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.12316082737304	7.0341749189355	6.79797290364522	6.83979739267548	6.93780245012519	7.02817313475237	-0.100513993009352	0.690999897453922	0.918111288899736
Merged-chr1-43303000-4	chr1	43302491	43303491	+	958.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106230.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	3.23980357839704	3.43114599169223	3.39159654857023	3.72280576146747	3.45052312362574	3.87364567416433	1.19931138231379	0.0468060007000492	0.273826457586283
Merged-chr5-88573492-4	chr5	88573006	88574006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	8466.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.19939684146946	7.02194234001441	6.94641650023401	6.76881096240806	6.95284129893695	7.14718014490483	-0.159063849680738	0.53715989183744	0.854311531235259
Merged-chr11-120983088-2	chr11	120982588	120983588	+	946.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 2 of 9)	intron (NM_027874, intron 2 of 9)	8245.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	4.36308419704509	4.43181312173847	4.41732803775492	4.78447816158687	4.37137678211834	4.34973021345267	0.291268003421741	0.518675959803912	0.84542522050122
Merged-chr11-44541287-2	chr11	44540793	44541793	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	21916.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	4.06889782002958	4.10428868322396	4.19780396997215	4.30040261301889	4.17044593420037	4.30991087533743	0.380321278263358	0.412116128735106	0.784314318706468
Merged-chr16-87712218-3	chr16	87711724	87712724	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	13270.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.30241325575035	4.61688429300561	4.47634470645646	4.70140929284329	4.6639191943954	4.50059172088024	0.381740633825636	0.376718640184194	0.759336465825071
Merged-chr17-56269984-2	chr17	56269484	56270484	+	768.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_174989, exon 2 of 2)	exon (NM_174989, exon 2 of 2)	6783.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	7.25985701525801	7.32237982489306	7.09425478144098	7.17118975875515	7.41729703818731	7.32124694792014	0.111622727339443	0.642156758954759	0.899352614913166
Merged-chr5-134187558-4	chr5	134187049	134188049	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B3|SINE|B2	3511.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	3.36645750627096	3.58564486858964	3.4527661911315	3.63896965769387	3.64780059653479	3.88376902385329	0.871523866578018	0.128406913760066	0.479277664179651
Merged-chr7-64392697-4	chr7	64392192	64393192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	70.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	7.42924715106137	7.5270583947257	7.09968817171843	7.29380893702597	7.24465429934351	6.86843447318476	-0.319453740657451	0.233119286030166	0.629519668711194
Merged-chr3-153406398-4	chr3	153405915	153406915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-107766.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	5.44327629185837	5.52903181946779	5.17806757191686	5.45783607625328	5.39285498074595	5.37560272012028	0.0117245366780986	0.972797570625594	0.993881982649774
Merged-chr7-28962420-4	chr7	28961921	28962921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360548)	promoter-TSS (NM_001360548)	-89.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	6.69026060088531	6.92123638300954	6.60993801233319	6.62141079327253	6.60816888172869	6.1492503837794	-0.416416192115501	0.15273035686879	0.521113196963065
Merged-chr17-73107403-4	chr17	73106895	73107895	+	897.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-590.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	7.68820633847904	7.86992701130195	7.52995527175212	7.71880031064171	7.91159537978704	7.674074661684	0.09709491680184	0.678830120722513	0.913553914280182
Merged-chr9-94538509-5	chr9	94538042	94539042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033145)	promoter-TSS (NM_001033145)	-461.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	7.27939821151379	7.09799490259168	7.23210370478139	7.3068926589487	6.90744058516236	7.02681871772876	-0.171608933838861	0.500762042056321	0.835242909787083
Merged-chr10-44454808-2	chr10	44454308	44455308	+	800.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	3940.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.7566264844128	4.98010801837754	5.12376669354018	4.80407994305483	5.02066095565908	4.98749958677726	-0.0254795584715126	0.94798389539034	0.988024000499268
Merged-chr15-99126479-7	chr15	99125962	99126962	+	979.761902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139140)	promoter-TSS (NM_139140)	-383.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	7.8063801301773	7.15311877481814	7.48364340593917	7.47760068643798	6.94002760056603	7.28418887221588	-0.384360599393868	0.192018218176969	0.57896940713307
Merged-chr8-10910657-4	chr8	10910170	10911170	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10748.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	5.49867538857217	5.48834075173033	4.98525320783953	4.72284778236603	4.79338266707197	5.22378785645889	-0.903950967555325	0.02700379902871	0.195640584203822
Merged-chr6-120821602-3	chr6	120821144	120822144	+	676.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007510, intron 1 of 8)	B3|SINE|B2	1054.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	7.01465636031909	7.48503222062937	7.08297495674999	7.47318162299094	7.61855799962333	7.16711280841823	0.329933811261089	0.229867712896059	0.625574980495329
Merged-chr3-96501591-4	chr3	96501098	96502098	+	993.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-23587.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	5.17792659078535	5.10716584188748	5.42825383766705	6.07760784297028	6.28287297523604	6.05744466338069	1.69278991025823	1.52665290777556e-07	1.03528716503821e-05
Merged-chr14-73170554-2	chr14	73170054	73171054	+	805.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27769.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.90822451224	4.82365396371653	5.36060483431199	5.00906479347563	4.7755067602766	4.88340438815154	-0.32373975530802	0.42799666605973	0.79478410196054
Merged-chr6-71198109-4	chr6	71197622	71198622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	6.82304778439915	7.07372557206518	6.60977918197756	6.6525163294781	6.86973755470194	6.58066924915036	-0.22432400153958	0.419974317750714	0.789419274660615
Merged-chr10-115330001-2	chr10	115329501	115330501	+	882.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-14410.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	2.54634519824453	2.60685412628321	2.47873197247417	2.74243746874134	2.63619290430601	2.80811168659112	1.00470266812601	0.192664684744036	1
Merged-chr16-32431788-2	chr16	32431288	32432288	+	751.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	558.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	5.87638067085055	5.94599009142375	5.44003230813791	5.8780828143118	5.8273662433873	5.62769953390555	0.00123781770737231	0.997052236516831	0.999305289467698
Merged-chr2-24385839-3	chr2	24385332	24386332	+	828.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	500.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.11853072554756	5.99070488903487	6.10810828237204	6.37769018733741	6.38182493935483	6.33312931532007	0.494221945370604	0.0728527662793488	0.35460268947482
Merged-chr11-3194219-4	chr11	3193720	3194720	+	972.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030207)	promoter-TSS (NM_030207)	-757.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.73531100193767	7.14244496204661	7.36401636494421	6.61947212683942	6.23962292901049	7.42138745316012	-0.359605397639537	0.542574997792219	0.857305793970774
Merged-chr7-83659603-4	chr7	83659115	83660115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4120.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	7.32211082558823	7.30003392887868	7.28878166415094	7.23620299255845	7.27343146242644	7.40048835138562	-0.00423236644890108	0.985216608171686	0.996873682039026
Merged-chr6-81923698-4	chr6	81923210	81924210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177884)	promoter-TSS (NM_177884)	41.0	NM_177884	330361.0	Mm.474487	NM_177884	ENSMUSG00000035125	Gcfc2	A130099G21|AW146020|GCF2|Tcf9	GC-rich sequence DNA binding factor 2	protein-coding	4.8975679302273	4.70652930318009	4.6094283420963	4.67256412401159	4.38138317239161	4.45997243746454	-0.578224884824402	0.175375765443157	0.555234255041254
Merged-chr4-132048531-2	chr4	132048031	132049031	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	CpG	547.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.95906995179798	4.50839027897278	4.74614261281354	4.71751533793078	4.51386652903872	4.48102085705573	-0.415753152625322	0.337293460658343	0.727217740897556
Merged-chr12-40223406-4	chr12	40222909	40223909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035459)	promoter-TSS (NR_035459)	45.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	8.75176848704203	8.93002977605224	8.06790229340635	8.42264791300725	8.64321870368097	8.11591165571459	-0.310757948248522	0.288758994148849	0.686124851873233
Merged-chr7-130816384-3	chr7	130815899	130816899	+	792.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 11 of 15)	intron (NM_001081038, intron 11 of 15)	42330.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	3.67680102033754	3.72032883982199	3.6457408111258	3.73243776053642	3.33522050079244	3.66345652355564	-0.349314313492616	0.54469257269179	0.857894224757806
Merged-chr10-43479981-4	chr10	43479482	43480482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199028, intron 1 of 3)	CpG	842.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	7.36351405183213	7.55705410883978	7.27992412594892	7.47422694655816	7.26207714571669	6.92549183358363	-0.239187614071239	0.365281542612499	0.750422106947654
Merged-chr19-43667278-4	chr19	43666770	43667770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	7611.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	4.29110815132853	4.28491348825373	4.43900010198463	4.14620154191151	4.10617875713178	4.50479024250458	-0.22238259416986	0.63567057504116	0.896732625932878
Merged-chr10-83184117-4	chr10	83183619	83184619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	MIR|SINE|MIR	153698.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	4.09123217240619	4.22161764455276	3.78653772739984	3.52934671596603	3.94688658541717	3.74907850903485	-0.925242014483452	0.106013109217177	0.434594013486444
Merged-chr12-111944075-4	chr12	111943596	111944596	+	890.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029464, intron 1 of 2)	intron (NR_029464, intron 1 of 2)	386.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	5.6347395473515	5.90112947291109	5.93730031538316	5.7837350941134	5.59510667500197	5.9297954457546	-0.109588913975432	0.733639806926961	0.932175155100531
Merged-chr7-145113178-2	chr7	145112678	145113678	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94941.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	6.81052912626407	6.75030258553518	6.97604822634212	6.67262103546482	6.79214069058565	6.59828228779488	-0.22807208525878	0.374333759004082	0.758058822552447
Merged-chr2-24311913-4	chr2	24311433	24312433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7A_LINE|LINE|CR1	20737.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	5.62848957227548	5.72970758445957	5.78944696619149	5.62117889506892	5.77216299902986	6.15678450016839	0.261044000522841	0.429621326017315	0.795827826691029
Merged-chr15-77542041-3	chr15	77541532	77542532	+	803.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8717.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	3.11280741589129	3.16913997343767	3.23040048487917	3.52829992098757	3.5285826833117	3.77853153811658	1.75399501270931	0.00469554898446208	0.0586295377999881
Merged-chr14-52280647-2	chr14	52280147	52281147	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023434, intron 3 of 9)	URR1B|DNA|hAT-Charlie	-1252.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	5.89210574911982	6.1024901285717	6.01072510693419	5.97265209377889	6.09110125083982	6.23933615630424	0.164291080374108	0.577473408386622	0.872148719828391
Merged-chr5-129959288-3	chr5	129958796	129959796	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	17187.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	3.14536795965865	3.26585869466922	3.26754557557131	3.33258002884534	3.28665500549632	3.39445374128471	0.444311994354939	0.467294097454122	0.817892453953778
Merged-chr11-9534333-2	chr11	9533833	9534833	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 46 of 61)	intron (NM_178259, intron 46 of 61)	342391.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.2802882203245	2.35346627475647	2.56952545054474	2.22231506782978	2.10495113877917	2.64298615586214	-0.383785923030534	0.676120806633213	1
Merged-chr2-21111630-1	chr2	21111130	21112130	+	576.0	f0_balb.idr	Intergenic	Intergenic	93735.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.4748022199662	3.83611792555051	3.59234961617738	3.27697776320364	3.31717576829678	3.44565239060748	-1.1299926808097	0.0606773886974352	0.319101837203376
Merged-chr10-40643455-4	chr10	40642951	40643951	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133568, intron 3 of 4)	MTC|LTR|ERVL-MaLR	13440.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	2.80874261690294	2.9559354796552	3.01862797031936	3.01445983884149	2.8949296956123	3.1473033907129	0.420541614974545	0.540641962167971	0.856430719212454
Merged-chr9-56265670-4	chr9	56265189	56266189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	Lx7|LINE|L1	-104619.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	7.21061439426606	7.2044748337728	6.84546931579379	6.6394283216179	6.78408663367677	6.41517191758796	-0.72943665937022	0.00784867166240792	0.0848807215603897
Merged-chr2-103796556-4	chr2	103796110	103797110	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	CpG	468.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	8.71189285323196	9.08115318585064	8.77114252422136	8.67902077977113	9.06817843505849	8.97372685401988	0.070043731249561	0.761958067679517	0.941355820818144
Merged-chr16-8766386-4	chr16	8765903	8766903	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28061.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.12991944021759	4.27196842608616	4.25678065582422	4.05993535843032	4.27835990248958	4.27987870526012	-0.0247820921618564	0.957665687787311	0.989969855526119
Merged-chr12-24980333-8	chr12	24979817	24980817	+	812.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	(CAGG)n|Simple_repeat|Simple_repeat	5385.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	5.77427804720659	5.99222872856985	5.87965963133971	7.13469157796525	6.98289770202061	6.5505376234682	1.68252167026645	1.99348484883009e-08	1.69259068674954e-06
Merged-chr11-113766489-4	chr11	113765994	113766994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie8|DNA|hAT-Charlie	-14679.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.26255121058461	4.22984405113951	4.50509943850617	4.87177847378527	4.57379344508429	4.69216530368713	0.964737627187047	0.0271652734065258	0.196308064865786
Merged-chr2-165946365-4	chr2	165945855	165946855	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-46282.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.19270274168064	6.68012290677507	6.77641192890938	6.91298516714788	6.93031582403541	6.68936305112965	-0.0833093709945667	0.767430214683965	0.942617496111852
Merged-chr7-45921474-4	chr7	45920967	45921967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-41.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	5.99708854310535	5.87096250911922	6.24905777680309	6.03246065415711	6.00642021310694	6.8115218687749	0.484835758999648	0.177834476631388	0.55892688546374
Merged-chr11-44408769-1	chr11	44408269	44409269	+	553.0	f0_balb.idr	intron (NM_001303244, intron 4 of 7)	intron (NM_001303244, intron 4 of 7)	8706.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.01624373289493	3.09033027548276	2.74158233519724	3.11105052766741	2.71120421093346	3.00954764903097	-0.0344119230974956	0.963563177225995	0.991121100730027
Merged-chr17-34309466-3	chr17	34308989	34309989	+	632.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	3622.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.22363844026227	3.06995826754379	3.31482232338771	3.64568069330782	3.891677717786	3.86577953785705	2.36369246240242	0.000165561461597443	0.00429829581797194
Merged-chr14-31568814-2	chr14	31568314	31569314	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	8569.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	3.92399896493167	3.71151297709592	3.86370758355577	3.95484495193062	4.00752261446608	3.66482242431133	0.182440159798232	0.732657459163502	0.931839011711124
Merged-chr8-61591178-4	chr8	61590666	61591666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293774)	promoter-TSS (NM_001293774)	3.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.30907245523499	6.65851753855639	6.483124234953	6.16215222313637	6.31300179040533	6.29936390571023	-0.381947682974138	0.175966818853693	0.556082959363853
Merged-chr12-36308888-3	chr12	36308414	36309414	+	940.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	3.42325203032512	3.60124844003842	3.50261652835642	3.70072930719705	3.49696490403779	3.78172296784056	0.513762767802501	0.368135791247607	0.753106232928428
Merged-chr2-155134226-6	chr2	155133695	155134695	+	829.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	714.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	7.95174583427763	7.72902523164251	7.85182367948462	8.24620296040166	8.14481276519134	7.90786508260605	0.377889189523539	0.0957006789259316	0.412444299584033
Merged-chr13-8995392-5	chr13	8994898	8995898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027000, intron 1 of 16)	intron (NM_027000, intron 1 of 16)	614.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	8.21473560719481	8.47621845909855	8.18678882577141	8.3858879427491	8.78912159417174	8.02513395173624	0.202944356287125	0.451339491951383	0.808957790071745
Merged-chr12-64965648-4	chr12	64965156	64966156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	-86.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	7.63890681412962	8.11928676812223	7.33633212163262	7.49980996090462	7.68076948658721	7.56616269494959	-0.236763090056221	0.399386611533792	0.775836045489652
Merged-chr3-95818817-4	chr3	95818257	95819257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081293, exon 1 of 11)	5' UTR (NM_001081293, exon 1 of 11)	196.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	8.12724544720681	8.32977815928792	8.33125289224211	8.28883970835635	8.46249323007829	8.44393420832901	0.190457393970477	0.366974065364632	0.752023890032025
Merged-chr4-133814839-2	chr4	133814347	133815347	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59884.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	7.41053070123087	7.28440872833564	7.42045202734323	7.28431217313432	7.6234688101805	7.41444027738562	0.122185897204626	0.609656320125418	0.885308220347415
Merged-chr9-14758787-4	chr9	14758285	14759285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 3 of 3)	intron (NM_029306, intron 3 of 3)	-6663.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	3.89140324466589	3.51368051687106	3.73080987257596	3.72987214433926	3.53540825989466	3.64311769483998	-0.290293004600029	0.607010515813895	0.884418509188691
Merged-chr1-135399682-4	chr1	135399179	135400179	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-24616.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	3.88657806173344	3.63365496118384	4.07005662913588	3.88088039272921	4.1437734939108	4.04597828541079	0.497591810021118	0.346082824805045	0.734515828466387
Merged-chr7-134690388-4	chr7	134689899	134690899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	19712.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	6.16284277989004	5.99076691054997	6.06852452548301	6.39471635000279	6.08248579144037	5.78382856455988	0.0755865134224474	0.81214641282537	0.955504195441058
Merged-chr11-54729534-4	chr11	54729046	54730046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	58157.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.56611481537428	6.53050836897584	6.69940154632019	6.18885015389238	6.3375097409709	6.30738044719738	-0.51182025541404	0.0566866597140876	0.306922408998556
Merged-chr15-79524862-4	chr15	79524373	79525373	+	973.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134090, exon 3 of 5)	exon (NM_134090, exon 3 of 5)	8044.0	NM_152806	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	3.60856774298987	3.51662049619713	3.26850243845938	3.40629759206842	3.39362426640367	3.40095975541185	-0.29940142570049	0.618771520560513	0.889515655407396
Merged-chr7-16782627-4	chr7	16782124	16783124	+	887.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	1278.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	3.53935486157085	3.52308147034571	3.44125139699595	3.60947229794428	3.19360616408754	3.72278437696007	0.0644924003265579	0.916889191481235	0.981431795618389
Merged-chr12-85575633-4	chr12	85575131	85576131	+	841.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23474.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.78397136455076	4.70520743835757	4.92581188389612	4.82602510369192	4.94714935890425	5.15516102897775	0.389289494710801	0.319496284249131	0.713488854059233
Merged-chr5-20864762-4	chr5	20864253	20865253	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	17371.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	6.01439217339622	6.52630180228395	5.94618276611688	6.43637574629491	6.44817982458543	6.321834728637	0.335169687442076	0.286771618259173	0.684049330966639
Merged-chr11-20114160-2	chr11	20113656	20114656	+	908.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1205.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	5.92509381675049	5.99678599873842	5.9833139645351	6.43832524013977	6.93235367595976	6.60204403636987	1.17747473323492	6.26167188740592e-05	0.00191200438314595
Merged-chr7-100508028-2	chr7	100507538	100508538	+	887.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	intron (NM_153527, intron 3 of 7)	6777.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	5.42899540402371	5.37939260633309	5.0220137997963	5.78924953568654	5.84579817758337	5.7547354272326	0.929699510335874	0.00665700705297324	0.0753422528378397
Merged-chr1-172078158-1	chr1	172077658	172078658	+	696.0	f0_balb.idr	intron (NM_021607, intron 2 of 16)	intron (NM_021607, intron 2 of 16)	-4371.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	3.06449263826299	3.26380345507346	3.5084894523197	3.3192808731753	3.37477174099139	3.36691136696357	0.27733794606371	0.661019546003372	0.906246109292722
Merged-chr1-87656311-4	chr1	87655823	87656823	+	819.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	L1MC4|LINE|L1	36011.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	4.9221100316041	4.55706952165957	4.92598159780394	4.94819842020054	4.89939072682419	5.09213187114768	0.375669886487143	0.347896198285686	0.735872359218958
Merged-chr13-23534926-4	chr13	23534427	23535427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-491.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	5.29978911067337	5.39593823499178	5.12722782390447	5.36223880037756	5.89952386194418	5.54653648963404	0.663646210630618	0.0684235450711647	0.342191750107073
Merged-chr7-46790866-4	chr7	46790357	46791357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5024.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	6.45052410140768	6.7076145145825	6.4994159657525	6.56647937564156	6.50866534695458	6.48660292476613	-0.0640401176989722	0.809933232082814	0.954862887748354
Merged-chr5-43847725-4	chr5	43847236	43848236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21073.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.6629600813268	5.35196041636051	5.61657396177375	5.49395118284177	5.40741845655216	6.00545132147619	0.19019828982202	0.601369704422747	0.881938496212464
Merged-chr15-38710971-4	chr15	38710460	38711460	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17556.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	5.89238280800738	6.04850533857098	6.16571954171155	6.18404680488305	5.92008895719959	5.64028072924053	-0.161052074800684	0.61677328623188	0.888523142052738
Merged-chr13-23577105-7	chr13	23576506	23577506	+	887.305969	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178204)	TTS (NM_178204)	1243.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	5.05501807251694	5.10170947824054	5.00546935389479	5.25348294320892	5.24115595931646	5.66312893672641	0.671368760947817	0.0691021169750804	0.34395473619309
Merged-chr10-79994633-4	chr10	79994199	79995199	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007725, exon 7 of 7)	3' UTR (NM_007725, exon 7 of 7)	-2909.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	3.80719302305352	3.71372321343072	3.86153969165389	3.77253856680752	3.82832486062371	3.72671953093056	-0.0380653062018889	0.942069072684729	0.987097394617189
Merged-chr10-80052792-2	chr10	80052292	80053292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	-696.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	7.7374699174275	7.87277721789117	7.64429579785575	7.96524359683774	8.15815016917415	7.50915491473543	0.225660441814031	0.386445847587447	0.767120406662124
Merged-chr4-53103285-2	chr4	53102822	53103822	+	598.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	(CA)n|Simple_repeat|Simple_repeat	56573.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.85196920966854	2.73989240130918	3.19439638284384	2.83027851496056	2.56185060503369	2.93382586854334	-0.779053130555807	0.312407803430106	0.707156602251519
Merged-chr11-102408024-4	chr11	102407528	102408528	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-511.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	8.92572233122322	9.10040743637559	8.57679366815508	8.8007319264692	9.33551934301575	8.44935025114922	0.0463231715215098	0.873724283339356	0.970440430875665
Merged-chr13-38028135-3	chr13	38027631	38028631	+	944.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027724, exon 3 of 13)	exon (NM_027724, exon 3 of 13)	8806.0	NM_027724	71213.0	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	3.13358079560593	3.16227555231753	3.16455719887953	3.91112153940989	4.07742510859062	3.4370716163938	2.69039649431243	5.77494476986284e-05	0.00177576350484386
Merged-chr5-143464566-4	chr5	143464062	143465062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144915)	promoter-TSS (NM_144915)	69.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	7.96263953215097	8.27506927292259	7.77909340786569	7.79425598417018	8.09378616363642	7.66109999886101	-0.224983103067382	0.383121136619624	0.764535004943228
Merged-chr3-87919516-4	chr3	87918997	87919997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026591)	promoter-TSS (NM_026591)	-47.0	NM_026591	67707.0	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	5.54795579085892	5.38049498924165	5.73112846234071	6.05953696834624	5.72764038843873	5.84278581718829	0.604735636950484	0.0654971814390248	0.333796133593335
Merged-chr1-92976638-8	chr1	92976094	92977094	+	917.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	1247.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	5.27148578441248	5.40544499482946	5.60194790815171	5.48232863323687	5.30721977880562	5.38214840450749	-0.0662851424058461	0.846826472742849	0.964111312125802
Merged-chr6-83641910-2	chr6	83641410	83642410	+	792.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	14206.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.37945623643992	4.5556209759784	4.94551827268311	4.71150834843849	4.53780582077871	4.72953996976874	0.0515653432589614	0.907069651826512	0.978868492078838
Merged-chr9-111052910-1	chr9	111052410	111053410	+	586.0	f0_balb.idr	Intergenic	Intergenic	4334.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	2.62910096399568	2.52265963650747	2.81106944973964	2.62347309841344	2.56893600575754	2.76530961552543	-0.018493529985902	0.9806648965834	1
Merged-chr8-126573333-4	chr8	126572810	126573810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	20126.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.99630595257026	5.79943852583654	5.6040956597694	5.38601204438811	5.34514559890082	5.5824661028571	-0.719139007137572	0.030456912157305	0.210942129747381
Merged-chr15-67899569-4	chr15	67899104	67900104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	359252.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.85129469629145	5.01073525088791	4.97136329832438	4.82950020881886	4.58553229992249	4.85693949254435	-0.433352680059688	0.272081579273819	0.669529543069504
Merged-chr2-124909956-4	chr2	124909457	124910457	+	938.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158170.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	4.21795919240172	4.29588246653947	4.50708407176014	4.10406261970076	4.33511971032202	4.23506413356697	-0.282649281894999	0.543873717921028	0.857551302506722
Merged-chr9-108854603-4	chr9	108854118	108855118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134420, exon 1 of 18)	5' UTR (NM_134420, exon 1 of 18)	575.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	7.54447220659769	7.54365332208507	7.27375917107126	7.36209113553986	7.56196812382901	7.06091960924143	-0.161472705086961	0.53363790879643	0.852530599317783
Merged-chr18-64989653-4	chr18	64989166	64990166	+	956.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-33861.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.1635244936153	2.95561300157694	3.09806679411804	3.5009510802208	3.26524150838174	3.34788696319469	1.26127341732966	0.0517588121773468	0.290368611357381
Merged-chr7-132931110-4	chr7	132930616	132931616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362198)	promoter-TSS (NM_001362198)	-26.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	8.30336562270173	8.15072840263808	7.87859779092234	8.2510106086905	7.9962186304179	8.07318055114259	-0.0258023864239616	0.912048370450183	0.980237529509273
Merged-chr7-127375703-2	chr7	127375203	127376203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175560, exon 1 of 3)	exon (NM_175560, exon 1 of 3)	347.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	5.41169144441817	5.74516824581884	5.6221363258222	5.45047192700581	5.32566202180404	5.42937591974769	-0.385802703438565	0.251908490976164	0.649428218365646
Merged-chr18-36711191-3	chr18	36710672	36711672	+	755.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3|LTR|ERVK	-15247.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	2.73564395568654	2.36806417261362	2.58281968648428	2.413281400669	2.38699670873591	2.25642263187967	-1.34271054967041	0.126652503746932	1
Merged-chr16-45148768-4	chr16	45148251	45149251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 4 of 6)	intron (NM_028756, intron 4 of 6)	9922.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	5.6460278037987	5.55871318554365	5.7251167042605	5.35537585620015	5.57349646223215	5.45851898938616	-0.319020982262631	0.329518000799346	0.721399184090983
Merged-chr7-34196607-4	chr7	34196102	34197102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360710)	promoter-TSS (NM_001360710)	68.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	7.31081930563843	7.71507496068193	7.20813895718776	7.26920708574252	7.33655965932058	7.19129964189604	-0.249784348530593	0.335544704935468	0.725694211280635
Merged-chr7-128740526-4	chr7	128740028	128741028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-99.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	6.84548873743351	6.7661023745963	6.73842102265147	6.89497756733819	6.48833584515265	6.85693075091414	-0.053931408391858	0.841513758355205	0.962973289579854
Merged-chr8-3665248-2	chr8	3664748	3665748	+	925.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-514.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	3.74252567573679	3.76342372295382	4.21455577046648	4.40491037677003	4.11799400387457	3.89937371399971	0.715475708238386	0.187207581470908	0.572128204607461
Merged-chr8-81767553-1	chr8	81767053	81768053	+	918.0	f0_c57.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424991.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.52351653333258	5.9013141365913	5.57826846793629	5.01761291350068	5.21816570507989	5.53044849358267	-0.810394659342132	0.0265415198286504	0.193639947432708
Merged-chr14-75227634-2	chr14	75227134	75228134	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 16 of 16)	intron (NM_008879, intron 16 of 16)	-14653.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	2.86077116448923	2.52624337232544	2.8297352609036	2.74509914249434	2.66863408031423	2.84267240547451	0.0259613003257758	0.97269044504674	0.993868590220018
Merged-chr16-23271353-2	chr16	23270853	23271853	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-19117.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.11256532652222	6.52093988196354	6.79353503432866	6.49507333523084	6.58647028657247	6.32803008641734	-0.558201893388721	0.0596144939409115	0.316047011731232
Merged-chr2-150136691-4	chr2	150136188	150137188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181266)	promoter-TSS (NM_181266)	-10.0	NM_181266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	5.94975740665747	6.23630821914958	6.09471495219685	6.14353400648533	6.30566883877813	5.81388278639653	0.0300116972530523	0.923636702104531	0.982727549942016
Merged-chr3-123797209-3	chr3	123796719	123797719	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-106367.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	3.13514671272152	3.42910245368118	3.2893104418137	2.83099512512038	2.85029013304455	3.07603368439804	-1.7520310786659	0.0130804334022665	0.121389369274906
Merged-chr17-17909596-3	chr17	17909098	17910098	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21774.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	6.30519273707786	6.3315111524484	6.57048117918251	7.22147652393761	7.25559538485649	7.14717925672876	1.26773659552039	4.9396624646819e-07	2.90267962119528e-05
Merged-chr17-80172901-4	chr17	80172400	80173400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	34405.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	5.57819538376301	5.6645278743213	5.73545254300595	5.40180550761986	5.3488365167378	5.14041883363513	-0.664648568620505	0.0481079015496609	0.278085251977141
Merged-chr9-110652793-2	chr9	110652293	110653293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1368.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	4.27377424052131	4.01678806913399	4.26999234229819	4.46188843979572	4.03027093897265	4.33763875999916	0.257366492082278	0.59789324825046	0.880491661353492
Merged-chr9-109060700-2	chr9	109060200	109061200	+	600.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	-977.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	2.86453891975869	2.5970939807136	3.00163361921657	2.5491995709204	2.69750097514788	2.78394582244833	-0.778969502359933	0.314540394566496	0.708853181059774
Merged-chr7-92978494-1	chr7	92977994	92978994	+	543.0	f1_balb.idr	Intergenic	Intergenic	-101385.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	2.71018823829574	2.66723427225696	2.85941147018927	2.76274599915217	2.58909819717112	2.68863013494973	-0.346474481211924	0.640747474953235	0.898592932918303
Merged-chr9-55252276-4	chr9	55251725	55252725	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	B2_Mm2|SINE|B2	31400.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.73004836198357	3.92634581025576	3.96060354572446	3.35749537128284	3.45993121991369	3.58220397449823	-1.43075774742304	0.012305422552174	0.116260883356568
Merged-chr7-110630387-4	chr7	110629887	110630887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009627)	TTS (NM_009627)	2730.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	4.06977286696419	3.74610657534046	3.80063851630665	3.74593295932696	4.02836703806174	4.06729953498725	0.2156626616641	0.68528302230888	0.916206531915247
Merged-chr17-63873657-4	chr17	63873164	63874164	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	-4402.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	4.89133180296782	4.80860566340965	5.1829574000131	4.7467271324335	5.1823551613813	5.15232865122659	0.179068942672926	0.656881527915078	0.904720876497753
Merged-chr12-83953909-4	chr12	83953407	83954407	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023633)	TTS (NM_023633)	3299.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	3.82437609065133	3.75658423142911	3.96450970735224	3.97222819393832	4.00629782215368	4.03300656734733	0.489097522934338	0.330128473267594	0.721722325304293
Merged-chr17-24718757-1	chr17	24718257	24719257	+	744.0	f1_c57bl6.idr	promoter-TSS (NM_026205)	promoter-TSS (NM_026205)	-700.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	4.44150207341402	4.08439903125598	3.90904074082009	4.09466700420179	3.80408042556137	4.03183729668638	-0.560936444726107	0.285330909580797	0.68286396469164
Merged-chr17-35872593-2	chr17	35872093	35873093	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	5978.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	3.17918295715401	3.32458280721561	3.58929658728474	3.69858913863964	3.40470452960288	3.70933491226867	0.882783697349149	0.150907859427639	0.518112019240653
Merged-chr5-124542586-2	chr5	124542086	124543086	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	PB1D9|SINE|Alu	1795.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	3.10249572654874	2.9932423130282	3.11478804659159	3.09288300646455	2.88116036659698	2.9480552381195	-0.434315376343466	0.51953085025762	0.845839622469233
Merged-chr14-79503885-4	chr14	79503396	79504396	+	874.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	-11778.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.89961397931634	6.31243690195737	5.88857599739689	5.96974579360662	6.15280497328329	6.04585925234618	0.00444390563285898	0.988664853773016	0.997426973334006
Merged-chr10-118087056-2	chr10	118086556	118087556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-54731.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.09933395848598	6.01364104471275	6.0791637503568	5.44244589363244	5.46271579742482	5.09227437475199	-1.28978636273512	0.000112606088443929	0.00313009556737842
Merged-chr19-41378610-2	chr19	41378110	41379110	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	ID_B1|SINE|B4	6460.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.87351534945865	3.93002139918072	4.1708948795845	4.20401316426505	4.24758661622804	4.10010956589514	0.582312088101016	0.231749423980275	0.6278785513985
Merged-chr12-55485953-4	chr12	55485443	55486443	+	944.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6704.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.74177789820707	3.72349367514148	3.77350657766923	3.91814803922006	3.70458034715872	3.94133067377084	0.348429215151076	0.507601837051883	0.839275383157736
Merged-chr5-134225491-2	chr5	134224991	134225991	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 6 of 10)	intron (NM_010876, intron 6 of 10)	4134.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	3.43421256731845	3.26169416285605	3.49040212624963	3.12258293695137	3.11210264570334	3.70646147904537	-0.226546581834569	0.73471539181134	0.932597635580944
Merged-chr16-4627325-2	chr16	4626825	4627825	+	736.400024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030205, exon 28 of 28)	3' UTR (NM_030205, exon 28 of 28)	-2379.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	5.91223742544566	6.00475343318853	5.91620360750386	5.73264265482239	5.94598231446044	6.17192502702835	0.0145097703844988	0.962483879483206	0.990858153530085
Merged-chr6-136718962-4	chr6	136718448	136719448	+	983.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	MER44B|DNA|TcMar-Tigger	-57055.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.58090942858142	3.4544210626643	3.55156286930293	4.69433856696304	4.46527916214323	4.27631123450671	3.08749028255049	6.2816019887688e-08	4.69813819753622e-06
Merged-chr3-103210490-2	chr3	103209990	103210990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	38835.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	3.48584749722049	3.2431244482292	3.38562681414318	3.83860406581468	3.6646747489231	3.92831925646582	1.55343379632884	0.00829743919595721	0.088310734282068
Merged-chr5-4531255-1	chr5	4530755	4531755	+	1000.0	f0_c57.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	226961.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	5.59884301781964	5.84237995770438	6.180963846912	5.24351473081221	5.40582400716368	6.02661936780399	-0.534855830421175	0.173022104236736	0.551738511592893
Merged-chr7-75576393-4	chr7	75575891	75576891	+	991.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	120857.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.00498358022895	6.2072679073074	5.32778847267206	5.11410189334359	5.38017839653206	5.29003522524393	-1.19585055349364	0.00211370717540243	0.0322060697035131
Merged-chr8-71403574-1	chr8	71403074	71404074	+	648.0	f1_balb.idr	intron (NM_026636, intron 8 of 8)	intron (NM_026636, intron 8 of 8)	-2438.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	2.91503706286439	3.05270462985894	3.22816573678985	3.33794630176604	3.15660446096367	3.70651766116201	1.43326082691	0.0358778538600256	0.232755688756043
Merged-chr11-106778793-3	chr11	106778252	106779252	+	989.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_148430, exon 1 of 8)	non-coding (NR_148430, exon 1 of 8)	714.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	7.05085405583959	7.50091030155443	6.98474167765376	6.91053515294452	7.19906607883403	7.01518212466298	-0.236413275419746	0.391968720215853	0.770782330002482
Merged-chr10-61135870-1	chr10	61135370	61136370	+	545.0	f1_balb.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	11814.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	4.80151161604387	4.95796598342678	5.31498017623696	5.06915236168071	5.09517173477668	5.19729060495023	0.189040095728873	0.624980453608277	0.892311037285785
Merged-chr4-132337932-2	chr4	132337432	132338432	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 3 of 9)	intron (NM_133878, intron 3 of 9)	7818.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	3.82068529237883	3.66270120153913	4.08202656077301	4.74915388264731	4.13641371364301	4.54201968990978	1.80538877800227	0.000677759640917624	0.0133592049207241
Merged-chr16-90810041-2	chr16	90809541	90810541	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029497, intron 1 of 38)	intron (NM_029497, intron 1 of 38)	372.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	6.02491363875167	6.09486207347282	5.70780090946786	5.78144010634607	5.64552184445178	5.71565800917646	-0.449686860610699	0.152942951311997	0.521517789229106
Merged-chr8-122283554-4	chr8	122283025	122284025	+	944.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	1384.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.90554506078215	2.75530963909744	3.15045989276674	2.99423483993552	3.08251649486592	3.48092949005447	1.13875014533345	0.114543452098457	0.452032914562748
Merged-chr2-32969586-4	chr2	32969088	32970088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	6287.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	7.0016147550532	6.82240774789141	6.67026354835371	6.70806570019119	7.02133542087856	6.79361056662482	0.0146115394106906	0.956328568052879	0.989864129303063
Merged-chr13-23620248-3	chr13	23619771	23620771	+	774.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	823.0	NM_001177653	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	5.73543896274021	6.11619930041083	5.66703101678891	6.17627997774249	6.73495710687793	6.20453728715152	0.919001841855565	0.00709573654400441	0.0789334286568875
Merged-chr16-85124071-4	chr16	85123564	85124564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	49643.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.15347555774971	7.11577633842386	6.73631211105721	6.72415683849945	6.86118886160684	6.69622210476357	-0.39691641374049	0.134488059835301	0.490254933413278
Merged-chr17-47737737-4	chr17	47737250	47738250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-181.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.91667628113338	7.31602136711024	7.23278175144711	7.44111826969412	7.2634709019894	7.07855735203709	0.16161726661451	0.536581216897845	0.854055228150433
Merged-chr1-152583714-2	chr1	152583214	152584214	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	41503.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.2927114341928	5.40923625276963	5.80292568301008	5.68924552680286	5.58552677496775	5.34391758980027	0.0883043789806134	0.804877349514958	0.953680804534576
Merged-chr10-80929204-4	chr10	80928726	80929726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-865.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	8.21584279229371	8.2997616348274	8.08157065459918	8.16834959493842	8.36890022391564	7.94046914691038	-0.0373228751934156	0.871260970987778	0.970222087171093
Merged-chr10-128805489-4	chr10	128804970	128805970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359824)	promoter-TSS (NM_001359824)	-84.0	NM_001359825	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	7.50156803943429	7.58748021501738	7.40139680644627	7.58488853528867	7.83780518122005	7.49044093282712	0.220111908479745	0.352932975473145	0.740371789314747
Merged-chr6-100100868-4	chr6	100100357	100101357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	186501.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	3.05793091508524	3.00088647769269	3.09209795068221	2.84436444285613	2.69358979177802	2.8679450164401	-1.26068996749966	0.0760275494140006	0.36294322040391
Merged-chr11-69041793-4	chr11	69041293	69042293	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3844.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.76727569647513	5.87616248777906	5.68005429344444	5.73886873530178	6.23005753340427	6.01710858911122	0.416158953496086	0.19644626691272	0.584241224436114
Merged-chr7-88280808-2	chr7	88280308	88281308	+	971.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2723.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.41178107618142	6.4690647491714	6.55620047753474	6.95399509666931	7.20817614184672	6.73339087597095	0.806557041402153	0.00294093176362596	0.0414901746673091
Merged-chr11-120444023-2	chr11	120443523	120444523	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145363, intron 1 of 2)	intron (NM_145363, intron 1 of 2)	1392.0	NM_145363	208634.0	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	3.27772187116886	3.08619164433874	3.24428620135567	3.21742123023058	3.25620623563009	3.01552910657958	-0.129157759169025	0.842882649198285	0.963201849568639
Merged-chr11-113678728-2	chr11	113678228	113679228	+	644.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138598, intron 1 of 2)	intron (NM_138598, intron 1 of 2)	5423.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	2.38686738055849	2.2828947727281	2.55531136914868	2.22302751619412	2.30288951385218	2.38013158843553	-0.697822367855342	0.410144924762271	1
Merged-chr17-64603347-4	chr17	64602852	64603852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1703.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.90873877480885	5.14704732434558	4.65852949803555	4.84541721355742	4.45657718202204	4.99239358571987	-0.348379527570307	0.425895234527818	0.793463399937346
Merged-chr5-90701534-2	chr5	90701071	90702071	+	753.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-57727.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	3.1869688501248	3.19724757082353	3.06064273841226	2.92310002633162	2.76910226585334	3.01357453415371	-1.21280053571989	0.0807030291833568	0.375953974313704
Merged-chr2-33756587-2	chr2	33756087	33757087	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49229.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	4.51305733526277	4.64721393670475	4.15829906073007	4.30790581940682	4.20916979050436	4.22866769167349	-0.571374094728942	0.222860599869472	0.617776133760918
Merged-chr4-149191896-2	chr4	149191396	149192396	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207682, intron 37 of 46)	GA-rich|Low_complexity|Low_complexity	-25191.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	3.11435796534505	3.30844212855461	3.3948852130289	3.17835928868146	3.37650350319324	3.06013025862448	-0.224260401823624	0.732660122817799	0.931839011711124
Merged-chr13-55692097-2	chr13	55691597	55692597	+	743.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	4.61936747932735	4.75032298647164	5.15021121385348	4.71220724554982	4.81822089271213	5.24217334671518	0.190705496574099	0.660555423179118	0.905981809862142
Merged-chr13-92923762-4	chr13	92923273	92924273	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78986.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	3.45944475106701	3.49026554502736	3.95356517981039	4.86131138106841	4.60928073014323	4.45271860631185	3.15786576813041	3.81140264842722e-08	3.0290276176727e-06
Merged-chr13-37338037-4	chr13	37337506	37338506	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7339.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.8835900629889	6.9518775136854	6.95076630505122	6.85632696859168	7.23318490579501	7.00886009394333	0.18464210782006	0.4683344694875	0.818547995183628
Merged-chr1-180889977-4	chr1	180889464	180890464	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3144.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	3.71153378481263	3.69335444007691	3.63172988632237	3.63846403558335	3.77324140278493	4.08832241359574	0.513633875772381	0.350379645925504	0.738366841617277
Merged-chr14-32077223-4	chr14	32076768	32077768	+	919.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8018.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	2.40810702348123	2.30465950999345	2.36296394281665	2.56661060038681	2.32939815413614	2.56711126423315	0.811471893057238	0.325054528941531	1
Merged-chr11-120484622-4	chr11	120484134	120485134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-3.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	6.43815633897399	6.59915764667342	6.95435318727991	6.41269464901704	6.45723635687479	6.41359710099181	-0.388665018760467	0.173185628778306	0.55193311543606
Merged-chr7-99135486-3	chr7	99134975	99135975	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	5669.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.5584491121179	5.18577751095142	5.4863433022395	5.13674153296576	5.31658762463251	5.34424693214659	-0.293186863792303	0.411606199796143	0.784010458784097
Merged-chr7-128379641-4	chr7	128379158	128380158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	38514.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	7.92951512770476	8.16151234056176	7.7735160097538	7.78139904068437	8.27330400034534	7.70303662998743	-0.0208067853800126	0.937760117992912	0.98614846613846
Merged-chr15-6385109-2	chr15	6384609	6385609	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-1639.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.81173144588728	4.2647370111263	4.55570544189925	4.30696776553168	4.27962776425524	4.54532577085575	0.366151739246206	0.48074627998465	0.82478653093858
Merged-chr13-23698465-4	chr13	23697945	23698945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178208)	promoter-TSS (NM_178208)	13.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	6.94668451069596	6.72593346754835	7.01071393458552	6.87431341471571	7.02183950607225	6.98927471233648	0.107293014832164	0.669986398980083	0.909848353021523
Merged-chr11-52099902-4	chr11	52099354	52100354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1030.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	8.93296407390528	9.37488357651922	8.60744156030709	8.69251269841926	9.13352104466506	8.64675058086652	-0.230372567452465	0.408557024762084	0.782163677806636
Merged-chr13-59818003-3	chr13	59817493	59818493	+	869.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	5154.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.16464145325136	3.99879022481684	4.21603266322996	3.94280543333373	4.02152381136573	4.19515153568797	-0.212466182681302	0.662558572034922	0.906804932599005
Merged-chr13-74341234-4	chr13	74340749	74341749	+	593.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023281, intron 3 of 14)	intron (NM_023281, intron 3 of 14)	8991.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	2.571973816036	2.56315860722061	2.74849630318539	2.51699907855155	2.51391851434133	2.57663673913845	-0.532129985107279	0.489964189106709	1
Merged-chr19-10844673-4	chr19	10844148	10845148	+	808.446411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	2104.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	6.77139404141107	6.73501878165867	6.59997392917675	7.40166228543461	7.54799313689434	7.34018571664671	1.10017006722526	6.01361945292357e-06	0.000259264895046044
Merged-chr4-6443679-2	chr4	6443179	6444179	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10592.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	3.79057807728307	3.88285817549125	3.72057534211368	3.9028743210944	3.90368460326003	4.03993247791216	0.444767864200599	0.386619295879428	0.767131316757601
Merged-chr3-37639910-4	chr3	37639440	37640440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305442)	promoter-TSS (NM_001305442)	-7.0	NM_001305441	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	4.33163712649373	4.45771402302627	3.97300937098432	3.9346760361585	3.93881953033677	3.82664084601818	-1.08472503754201	0.0345365111751594	0.227747188291541
Merged-chr1-43917072-4	chr1	43916583	43917583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16911.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	5.68904548977134	5.49077947064546	5.43147106921963	5.871656866727	5.7366663219091	5.52618322696269	0.329353811219421	0.318637693199571	0.712586480386753
Merged-chr7-27196329-4	chr7	27195819	27196819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-48.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	8.05075026817945	8.36825719611165	8.01723554334242	8.16282606552101	8.39342088013652	7.80391258657431	-0.0111881252005733	0.965358036022079	0.991905650230612
Merged-chr14-87416536-4	chr14	87416032	87417032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-51.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	8.24106813790378	8.59210451372769	8.47415679964558	8.18021013271836	8.20134557341694	8.29602739169453	-0.306570100158941	0.159839021791775	0.532314801891137
Merged-chr9-75196542-4	chr9	75196030	75197030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010864, intron 32 of 40)	intron (NM_010864, intron 32 of 40)	-35484.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	3.64856404451631	3.60219561643512	3.58799779547139	3.412043042069	3.4084774424218	3.65789638609481	-0.448203478101378	0.432159692318412	0.797270167804312
Merged-chr6-34674474-2	chr6	34673974	34674974	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	B4|SINE|B4	-34970.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.13651206720271	5.44694317164726	5.15403145821323	5.34085412830134	5.78922150939719	5.25421866228502	0.464192638933199	0.22097896128917	0.61561513090473
Merged-chr10-70281196-3	chr10	70280689	70281689	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 4 of 5)	MIRb|SINE|MIR	35913.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	3.46361583939322	3.24497415243569	3.51621179047598	3.3274820839617	3.15344629209366	3.2576672180425	-0.656598809760517	0.290203380873142	0.687857653203032
Merged-chr3-131564026-2	chr3	131563526	131564526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-742.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	5.30985225130885	5.49925124529443	5.59054444123108	5.57010259017534	5.7762933082016	5.80611070420854	0.47832846949809	0.145036699791767	0.507985592300096
Merged-chr18-70645026-4	chr18	70644494	70645494	+	970.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	76702.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	6.36901778031286	6.2759164000983	6.24655055362562	6.76829113026201	6.80187683523997	6.46645209551052	0.637316665112459	0.0194309719969133	0.158369682582586
Merged-chr12-91756884-4	chr12	91756382	91757382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	29554.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	6.49740644101402	6.20441821472821	6.19675944252094	6.47981779947868	6.79011699782397	6.36156227092012	0.414871858409002	0.159554162428167	0.531855730603435
Merged-chr5-125275387-3	chr5	125274879	125275879	+	901.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65715.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.33582473758361	4.11626026587698	4.40975012523068	4.0417249550334	3.93938408124875	3.63872968672113	-1.15052988630629	0.0303961830168508	0.210661802137774
Merged-chr17-87105685-2	chr17	87105185	87106185	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1994.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	4.0633732214189	4.18031299492082	4.73556670134585	4.46248528581669	4.42464298616549	4.2859986087779	0.122439947654006	0.80503667493963	0.953760933583597
Merged-chr8-79168143-3	chr8	79167635	79168635	+	980.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	80448.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	3.33829870461789	3.17133497506247	3.09926327219347	3.5560776039624	3.34207731690534	3.29666955130197	0.768372481324025	0.225329520883605	0.620157403290544
Merged-chr5-144223675-4	chr5	144223169	144224169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356992)	promoter-TSS (NM_001356992)	-54.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	6.38728545610908	6.35456858533328	6.17187425584782	6.09445059555782	6.2132768497885	5.79372785177936	-0.426155345932249	0.156117102581011	0.526430210389073
Merged-chr1-118388898-4	chr1	118388394	118389394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-164.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	7.37146745348646	7.839399995227	7.79907932219908	7.57305388924289	8.09520556806713	7.85555734935185	0.254672000659287	0.343433272066224	0.732345474132777
Merged-chr12-32773964-4	chr12	32773467	32774467	+	967.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46368.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.00328104859221	4.7305133493483	4.48140189938143	5.13116033620424	5.01086036461449	4.68846811431044	0.43491975421428	0.313449020573004	0.708061492184189
Merged-chr1-138239772-4	chr1	138239275	138240275	+	656.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33963.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.12173217311716	4.20439238201861	4.13087856632956	4.1607849112587	4.06608182259059	4.28885799162803	0.0363966960440269	0.938297320283351	0.986341272517681
Merged-chr2-153071323-2	chr2	153070827	153071827	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145536, intron 4 of 8)	intron (NM_145536, intron 4 of 8)	5372.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	2.17981999716871	2.15788309858685	2.59390567076236	2.54707175431653	2.33021952064506	2.5456162950673	0.972989795363984	0.279175460162177	1
Merged-chr7-100530347-1	chr7	100529847	100530847	+	780.0	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6753.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	5.65510421609618	5.43023478582628	5.42009913084439	5.19571314648462	5.15442593670218	5.05146696880954	-0.736944487290002	0.0346142101329552	0.228060748811698
Merged-chr13-59668592-2	chr13	59668092	59669092	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	7192.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	5.31914750833353	5.74892693539101	5.91956414950812	5.71674313620895	5.82473297896358	6.02379228879301	0.321576457999152	0.353169294002946	0.740535792477092
Merged-chr8-121590381-4	chr8	121589888	121590888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-80.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	7.64174723853148	7.87213914145071	7.64836343456796	7.71519814409345	7.57965509196192	7.65898355506508	-0.112874528509826	0.616340174448651	0.888323384760338
Merged-chr6-108165813-2	chr6	108165274	108166274	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 3 of 8)	Lx5|LINE|L1	19809.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	4.77041416551284	4.5290427797262	4.70212481978294	5.53063499806139	5.48433310065086	5.34573860152311	1.68050836779629	7.47124026228378e-06	0.000312081807100456
Merged-chr13-92899722-3	chr13	92899170	92900170	+	980.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54883.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	3.51135700580418	3.38354426415798	3.75361338007601	4.68696232742914	4.31960554644071	4.44933567757171	3.06090238879488	1.00590074087055e-07	7.19063478061481e-06
Merged-chr12-112674540-5	chr12	112674112	112675112	+	921.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165894)	promoter-TSS (NM_001165894)	272.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	6.16232996704839	6.02476170705871	6.24236018678579	6.56073085913415	6.39003530878348	6.32249931318832	0.482525501856781	0.0846568594946973	0.385367250114053
Merged-chr12-33126464-2	chr12	33125968	33126968	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	21118.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	4.54666846203861	4.43484904972011	4.20291351726484	4.7165813034689	4.01093019104753	4.12110516727256	-0.208311907935123	0.688627133556399	0.9172299553909
Merged-chr6-125001351-4	chr6	125000858	125001858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 4 of 5)	intron (NM_001145926, intron 4 of 5)	2748.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	5.99941635813134	5.62120776287282	6.00529396811422	5.99086647598718	6.21589922342946	6.10985417112418	0.400681967021357	0.198737810955621	0.587160948993809
Merged-chr1-184728909-4	chr1	184728391	184729391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3602.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	6.82912216337091	6.34287420877224	6.73973293450348	6.72884519386117	6.59590161882499	6.67305720848433	0.0221632557307805	0.937318280670788	0.986057836872162
Merged-chr12-36380408-4	chr12	36379889	36380889	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1061.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	5.83564763644726	5.8860711268175	5.6670924350172	6.91359886313479	7.03506212458053	5.76360449962508	1.46721769957314	0.000221543711970511	0.00544263631108422
Merged-chr17-71526983-4	chr17	71526488	71527488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023294)	promoter-TSS (NM_023294)	-131.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	7.29462876012659	7.88175279572077	7.47179254085473	7.94023021093254	8.09595739152436	7.78562532310673	0.533168295599802	0.0438469125737125	0.263347329394649
Merged-chr7-132243762-2	chr7	132243262	132244262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-71902.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	6.13419936261593	6.14324258416209	6.15987055103424	6.06410446464119	5.98267513547587	6.09193381493767	-0.175008582433394	0.535033085526826	0.853378181653813
Merged-chr16-20692504-2	chr16	20692004	20693004	+	776.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001304432, exon 32 of 32)	3' UTR (NM_001304432, exon 32 of 32)	-2553.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	3.394393457726	3.42859711068446	3.91362662777493	3.60389719981018	3.35666482625127	3.89196329095293	0.123424203658547	0.843814780893355	0.963645026675097
Merged-chr11-49243389-4	chr11	49242889	49243889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-802.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	7.21828482671664	7.45225605829247	6.8223142022042	7.10160693085293	7.29964873401115	7.00123752815475	-0.0825468425807298	0.76767614215898	0.942671231130219
Merged-chr6-8686861-4	chr6	8686315	8687315	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71643.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	5.92576576931679	5.88688395395466	6.03311889990723	5.90096756763386	6.15423993647611	5.83155251335021	0.0641013329260033	0.833068245018167	0.960920783113681
Merged-chr7-135715832-4	chr7	135715328	135716328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	551.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.4168367304433	5.97021858306687	6.18411243883533	6.69013145003635	6.92505129038771	6.48565670542808	0.836019939653484	0.00540762420053818	0.0646676623280225
Merged-chr7-67237914-2	chr7	67237414	67238414	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 10 of 11)	intron (NM_001357324, intron 10 of 11)	15298.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.84805215942806	3.0037466566581	3.3190318163963	3.05160746291684	3.11485876724638	3.11594581348302	0.132807021158565	0.846913909424132	0.964139319360833
Merged-chr11-118291547-2	chr11	118291047	118292047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	3.68857038496917	3.89994225479212	4.17829582187379	3.58888541356618	3.84117773459449	3.62419042660115	-0.746331107166899	0.188218926771403	0.57366944154054
Merged-chr8-25070215-4	chr8	25069756	25070756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	C-rich|Low_complexity|Low_complexity	-31294.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.70225291439816	5.43429654829233	5.86636241353571	5.37930108656867	5.69654437374942	5.54562100611286	-0.219005514195536	0.524328625648031	0.848650426908011
Merged-chr10-81173284-4	chr10	81172779	81173779	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3352.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	6.23746769192709	6.22254022427243	5.92798557916404	5.91499078972135	6.05329305258246	5.78380202584785	-0.371339771076561	0.222682308714595	0.617620026273531
Merged-chr14-120835284-4	chr14	120834699	120835699	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75995.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	2.6835352979521	2.41461790281486	2.82818423868207	2.80149214970954	3.14559433289577	3.02100096670081	1.83693006359313	0.0279553423926204	0.199751664216845
Merged-chr1-88077329-4	chr1	88076820	88077820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201644, intron 1 of 4)	RLTR17|LTR|ERVK	6541.0	NM_201644	394434.0	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	3.06866567490449	2.92890426293844	3.07827745966718	2.78477785585729	2.84334824135971	3.14952660145856	-0.453002779661051	0.519565899029193	0.845844974891895
Merged-chr14-120387527-3	chr14	120387026	120388026	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 4 of 8)	intron (NM_001360376, intron 4 of 8)	81074.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.30229803478658	4.28964143440205	4.4985074203407	4.19199614592968	3.84602301602944	4.13634562887933	-0.843907602291001	0.0822084906959397	0.379123019025808
Merged-chr10-91139233-2	chr10	91138733	91139733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15270.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	6.86940561548913	7.35434782284595	6.85296450634476	7.04138585098655	7.26369531587441	7.01277490204195	0.0901567303313105	0.745833339536367	0.936251303305737
Merged-chr12-76372127-4	chr12	76371565	76372565	+	775.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1799.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	5.51635242406582	5.46295890138138	5.74502361916504	5.68016555261701	5.68825546421611	5.75649637798661	0.253244201857139	0.428310482705697	0.795155257585355
Merged-chr9-41138308-1	chr9	41137808	41138808	+	545.0	f1_balb.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	19754.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.0233251245539	3.04078621207514	3.54058391096106	3.12307543579396	3.03583661660209	3.25126011684496	-0.335786604191275	0.623636933578244	0.891531345574754
Merged-chr19-29101315-4	chr19	29100818	29101818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021525)	promoter-TSS (NM_021525)	-57.0	NM_021525	59028.0	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	5.6333649691232	5.85700329939363	5.79926681879186	5.61679938884108	5.78011407379564	5.23573069590414	-0.339571231400873	0.328277867097268	0.720512378081019
Merged-chr1-36001594-2	chr1	36001094	36002094	+	691.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66806.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.01454762711425	3.35882913233839	3.17789939146214	3.34087547751495	3.25863870822795	3.3082796772474	0.437654461593979	0.495624560292623	0.83254120142987
Merged-chr8-111299465-4	chr8	111298947	111299947	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146218, intron 1 of 12)	intron (NM_146218, intron 1 of 12)	775.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	6.50776330191332	6.58893255701122	6.66315086221054	6.61000744130942	6.90648527825246	6.64012025519852	0.237396611950941	0.371443386107392	0.755590455851299
Merged-chr15-80037372-4	chr15	80036850	80037850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4a|LINE|L1	-22542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	6.1692464611708	6.18544936995641	6.27788704257247	6.04338171455131	6.19426960433133	6.23901633835339	-0.0806641916821858	0.773833745987866	0.944186409608656
Merged-chr5-35551950-3	chr5	35551438	35552438	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23132.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	3.91091250245407	3.99650641565697	4.0777778852503	3.69246856073246	3.61578022152392	3.70552080810574	-1.05546720492231	0.0445750714693216	0.26612601451673
Merged-chr2-59188811-4	chr2	59188304	59189304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	Lx7|LINE|L1	27954.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.05270007119324	6.12313765945464	6.09912609478865	6.3085470153211	6.45100980957573	6.45624743545809	0.525461331460025	0.0560188840402412	0.304734525576647
Merged-chr1-161552234-4	chr1	161551719	161552719	+	739.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57562.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	2.58971634273991	2.85359541125618	2.56447595009751	2.94355303885713	2.63598563164239	2.83457406959847	0.667655842439978	0.393257224870658	0.771515439837752
Merged-chr8-108699250-3	chr8	108698759	108699759	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15385.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.6684429288668	3.52829992470404	3.50371738280624	3.77699746276743	3.2572143902259	3.34170985670789	-0.321014667623292	0.605692458083792	0.883581756351046
Merged-chr9-45116863-2	chr9	45116365	45117365	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-1011.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	2.55001973212688	2.65014633255785	2.63247329164047	2.55428898735869	2.24440700020968	2.4497190498871	-1.19076463082797	0.159268851503747	1
Merged-chr9-114812152-4	chr9	114811649	114812649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	RSINE1|SINE|B4	-30156.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.59754629070489	4.76176419509473	4.72166490693135	4.74396167589565	4.50873370332524	4.35955549560442	-0.341984042911835	0.423380172102378	0.791992476794467
Merged-chr19-34474867-4	chr19	34474471	34475471	+	779.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009890, exon 1 of 1)	exon (NM_009890, exon 1 of 1)	164.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.26116744790401	3.12478892889096	2.96564579458204	3.03752340357264	2.85233831758546	3.10008272401929	-0.599253878240457	0.38278857142414	0.764181176848845
Merged-chr5-140722377-3	chr5	140721878	140722878	+	957.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1749.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	3.40006196455892	3.26114741564229	3.39771634962407	2.99327568798882	3.14174136850455	3.24867651641731	-0.937900162234105	0.143934624156536	0.506492100432085
Merged-chr6-145211057-4	chr6	145210549	145211549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133688)	promoter-TSS (NM_133688)	-79.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	7.35562228952093	7.77090963916112	7.16298611297794	7.63615286665809	7.98962423351117	7.5015688511181	0.389359499489529	0.168705624677765	0.545384732048155
Merged-chr11-6626023-4	chr11	6625522	6626522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130457)	promoter-TSS (NM_001130457)	45.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	8.05494307474213	8.2204057040507	8.0363137945854	8.23596738407364	8.32270962597979	8.01034105864133	0.13127207028792	0.552255165811614	0.861573972754341
Merged-chr2-129328455-4	chr2	129327950	129328950	+	854.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-18478.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	2.70086389612101	2.8484571530751	3.01559710989541	2.81570492559547	2.76295665997423	2.85418034251787	-0.235715631363483	0.742993693844666	0.935417543785804
Merged-chr16-45038439-2	chr16	45037949	45038949	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-55562.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	4.27206481734674	4.28529601272703	4.1791232096884	3.90363276864767	3.50123176816107	4.06257950684622	-1.2533840904138	0.021016385653473	0.166781833667352
Merged-chr10-127041981-4	chr10	127041501	127042501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205036)	promoter-TSS (NM_001205036)	69.0	NM_010792	17299.0	Mm.251593	NM_010792	ENSMUSG00000006732	Mettl1	2810012D02Rik	methyltransferase like 1	protein-coding	6.23976017065701	6.13924858787902	6.02645373451262	6.03135668416076	6.08455939853178	5.99403661344936	-0.176413015853131	0.53853778463283	0.855263045076316
Merged-chr2-164486411-5	chr2	164485916	164486916	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026797)	promoter-TSS (NM_026797)	-39.0	NM_026797	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	6.60137457129596	6.47315621995564	6.60527279034772	5.82230531496853	5.64915896196822	5.8464913053054	-1.34684081589208	2.49252913562087e-06	0.000121285593167685
Merged-chr10-79883443-4	chr10	79882945	79883945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011178)	TTS (NM_011178)	-2867.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	6.05001154777087	5.84825414579502	5.96365857656905	6.02314500629479	5.99524535707463	6.1135540001171	0.147104234900497	0.615325298890009	0.887891564068787
Merged-chr5-73557232-4	chr5	73556723	73557723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153313, intron 8 of 9)	intron (NR_153313, intron 8 of 9)	66197.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	6.47641186891973	6.3664195689103	6.00835497890761	6.04960056623957	6.16157619609157	6.13879516352615	-0.322729560642462	0.277740613773793	0.674948627070378
Merged-chr6-134106014-4	chr6	134105527	134106527	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	70327.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.02448209106065	3.85993794586219	3.97247889775406	3.83182251368952	3.59287817391416	3.94556250430232	-0.521711206914459	0.324421464983893	0.717544999689449
Merged-chr5-43185715-4	chr5	43185242	43186242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-47721.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.27142107460385	6.42254049362276	6.606604220109	6.57195510298056	7.01724671464804	6.41563511733306	0.436850852539653	0.150350489025063	0.517246479850651
Merged-chr5-115537568-2	chr5	115537061	115538061	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B1_Mus2|SINE|Alu	-21906.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	4.58261065639163	4.49480510851222	4.67718111527199	4.85749715891861	4.73952546413918	5.02528337001202	0.681379053509162	0.0936201606180873	0.407509223933344
Merged-chr16-31274164-2	chr16	31273664	31274664	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025800, intron 1 of 5)	L1MC5a|LINE|L1	1113.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	5.13088423075942	5.25817941739812	5.23798089573549	5.01497145335444	5.28568001605016	4.95473190853314	-0.210789436600304	0.568745852282811	0.868718319030953
Merged-chr3-101617624-2	chr3	101617124	101618124	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12917.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	2.70023014721798	2.62588121305248	3.09993454197106	2.6966714433649	2.6931317644821	2.64586886724865	-0.723895519432688	0.349052061855842	0.73710287140402
Merged-chr15-72917614-4	chr15	72917106	72918106	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-107282.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	3.06665652613405	2.90368018915418	2.99084031222546	2.8575944438512	2.94469948003494	2.88104380845408	-0.437609960937816	0.525069529413143	0.848874487604023
Merged-chr5-115491950-4	chr5	115491416	115492416	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	4.95728053026391	4.63536089941394	4.42680834834778	4.49711965397493	4.71032941345122	4.40213514619666	-0.353841459417757	0.433852973508292	0.798055448649894
Merged-chr16-77020486-3	chr16	77019933	77020933	+	672.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	6364.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	4.20801319933612	3.91067294749943	4.08284028798114	4.08364568137417	4.07670852551373	4.19726008204102	0.12624949907592	0.795342694323317	0.951091875905472
Merged-chr11-44377556-2	chr11	44377042	44378042	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22521.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.18557239519101	6.29599204794871	5.92146539312779	6.49825532692083	6.26556064173849	6.19452018414266	0.289213583510338	0.330437005696835	0.721899923071448
Merged-chr13-53376770-1	chr13	53376270	53377270	+	570.0	f1_c57bl6.idr	intron (NM_009269, intron 1 of 14)	intron (NM_009269, intron 1 of 14)	591.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	5.7112754533704	5.73214753973108	5.51851382755244	5.67865926583057	5.95040510669802	5.45835103117838	0.115798274280491	0.731814763124207	0.931535693390145
Merged-chr16-92410329-4	chr16	92409851	92410851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-10273.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.5549582335942	6.42731639639326	6.22553659900504	5.49708941672224	5.68960499051769	5.98266232729937	-1.18402651365922	0.000155435619193631	0.00409028684435915
Merged-chr7-115018604-4	chr7	115018092	115019092	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67318.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.85539238810511	4.07967058848749	3.97291492782056	4.41174348666436	4.22763724536608	4.36849440240981	1.01487370148593	0.0351308597136375	0.23002585576427
Merged-chr18-84852092-5	chr18	84851588	84852588	+	793.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	750.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	6.44216661331503	6.43537771201036	6.44963249533936	6.14660244545807	6.46111003354227	6.05634812010992	-0.318238628933248	0.27043829709812	0.667397153511295
Merged-chr9-123367549-2	chr9	123367049	123368049	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348167, intron 1 of 20)	intron (NM_001348167, intron 1 of 20)	622.0	NM_001348168	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	4.64018672785704	4.92341002080006	5.01056705983757	5.03002980795309	4.82332309630519	5.07460826765484	0.246468213172965	0.534692730312241	0.853068627162717
Merged-chr12-110497724-2	chr12	110497224	110498224	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	11985.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.38768267817354	5.07520502022396	4.80099824401612	4.81823651751706	4.66481862643538	4.71180331452331	-0.132686589369106	0.7664155035627	0.942467872936068
Merged-chr1-144204909-3	chr1	144204416	144205416	+	886.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27544.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	3.54275042676616	3.91884286960928	3.72319098260302	4.09748816764146	3.97564155088687	3.56536894631611	0.516235420449588	0.372713186330527	0.756537953227832
Merged-chr4-32288636-5	chr4	32288181	32289181	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128754.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.31878835162471	6.81968207467304	6.37946429374251	5.51681121745788	5.88824352750036	6.05183737885804	-1.17701956611874	0.000394598195083944	0.00869076935324109
Merged-chr4-141078857-1	chr4	141078357	141079357	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-500.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	3.6923010635708	3.34559637188181	3.41719081322937	3.49065753861176	3.68702067371581	3.65369133141124	0.413325848568248	0.483150610695123	0.826011835108275
Merged-chr11-53803267-4	chr11	53802765	53803765	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	32792.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.8395726075811	4.37904511336994	4.46517011120621	4.93272531656026	4.51239436999326	4.44271176307065	0.162527381213149	0.726500584938559	0.929867107699856
Merged-chr15-81871913-4	chr15	81871397	81872397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-5.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	7.82376052040833	7.86152373476813	7.7760527109417	8.05923381888262	8.24910945867849	7.89920706685499	0.372050511076579	0.0955161236045383	0.411968982629402
Merged-chr1-164136139-4	chr1	164135644	164136644	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-15691.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	3.50912214671722	3.66469713664837	3.41034979325653	3.50537204653664	3.32538886600755	3.36624699645243	-0.51365556413757	0.386267763756137	0.767035610573276
Merged-chr16-43390584-3	chr16	43390093	43391093	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	29603.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.45783736252482	3.17609979655549	3.40949256870257	3.37520164713955	3.4472850777421	3.48028942269935	0.317798528231399	0.598613244372554	0.880808927175713
Merged-chr2-32694233-4	chr2	32693712	32694712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010236)	promoter-TSS (NM_010236)	-37.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	6.0031696182873	6.28235112548785	6.28725886712474	5.95670373273728	6.02895813829967	6.16891114943224	-0.247448764968931	0.400891492964351	0.777054121938542
Merged-chr2-36271359-4	chr2	36270856	36271856	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40930.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	4.49073169947631	4.36409108079172	4.0754872259399	4.26136313923575	4.10261323487445	4.04282199100628	-0.518175315049526	0.283682927907787	0.681376161050487
Merged-chr13-75871555-3	chr13	75871046	75872046	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028493, exon 12 of 12)	3' UTR (NM_028493, exon 12 of 12)	31660.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.69738727964987	3.8323000029416	3.43748638897094	3.80633655217591	3.73987969617981	3.89242871369671	0.44372570268315	0.430352066811958	0.796220434934334
Merged-chr10-76032559-4	chr10	76032051	76033051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177475)	promoter-TSS (NM_177475)	-61.0	NM_177475	64453.0	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	5.5033875328028	5.52475153460463	5.18312469278186	5.60313084797935	5.25582923380598	4.98481896054449	-0.209552769981089	0.584508050560008	0.874568023559098
Merged-chr1-91456335-9	chr1	91455844	91456844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	2984.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	7.70246342526714	7.7969020989943	7.32441236922356	7.68481424726066	7.9325861212116	7.39334590379045	0.0964563786908766	0.720280963536261	0.928116738891602
Merged-chr11-70472968-3	chr11	70472465	70473465	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12981.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	5.03656928881971	5.02281865665756	5.05566512163966	5.31527799048335	5.24046988606188	5.01254105123699	0.34604935835029	0.340478348651645	0.730173453949955
Merged-chr18-49827625-4	chr18	49827108	49828108	+	904.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5389.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	3.09130621023711	3.1235925188682	3.19749491643807	2.90440076299805	3.21388476859811	3.21251483963635	-0.0715401271184139	0.914336442074431	0.980912729144991
Merged-chr8-84726063-3	chr8	84725566	84726566	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 6 of 9)	PB1D10|SINE|Alu	24609.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	3.69643965053053	3.60439762967071	3.81529462002883	3.64653183098672	3.61048578574277	3.57472319378833	-0.311681800920763	0.56939638409115	0.8688875602138
Merged-chr14-121984082-2	chr14	121983640	121984640	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-18947.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	4.22266113887016	4.4607028394528	4.29013526253956	4.38655149848962	4.16366590994209	4.44447863271666	-0.00799547628380813	0.986124767742596	0.997033990984076
Merged-chr11-52231999-4	chr11	52231477	52232477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011543)	promoter-TSS (NM_011543)	-18.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	8.44542986927102	8.80613081176364	8.44448756813931	8.29841540774395	8.39434147950288	8.18563333469608	-0.392221579281455	0.0828859642228051	0.380911041149407
Merged-chr11-119041081-4	chr11	119040596	119041596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-183.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	6.72318897628144	6.46095422801279	6.37351071619149	6.49203475067734	6.37869165069207	6.29297278666128	-0.229046156796957	0.411384178622662	0.783877099438722
Merged-chr10-80163241-3	chr10	80162796	80163796	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-4543.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	3.59784001847349	3.66776962497865	3.88925480826474	3.67622772464703	3.65193832573518	4.04717698911998	0.254253931694343	0.647831465968518	0.901538008768873
Merged-chr16-23332385-3	chr16	23331894	23332894	+	669.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	L1M4c|LINE|L1	41924.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.4944170875886	5.48530513222257	5.76388572276767	5.28025648310202	5.61716124706212	5.56815189846269	-0.148779373245432	0.663551004574074	0.907270618047719
Merged-chr18-9743412-1	chr18	9742912	9743912	+	792.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	35764.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.86411679068678	3.90121932228386	4.20801892895357	3.3560120183384	3.08921881577629	3.27597548334257	-2.99185896416639	8.34409494504053e-06	0.000342523656727643
Merged-chr3-51278778-2	chr3	51278278	51279278	+	576.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073429)	TTS (NR_073429)	-1264.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.1333071933101	3.22047615902431	3.50701953792331	2.99170181853869	2.87031933588894	3.37483668278239	-0.855689571393384	0.223378809762748	0.618087468987021
Merged-chr4-19927203-4	chr4	19926711	19927711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	4.20059411601189	4.14914889612353	3.83659139271949	3.65605966013014	3.90378520449963	4.0087006354927	-0.654199089452376	0.217946468393809	0.612062327203412
Merged-chr11-120571282-4	chr11	120570762	120571762	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 2 of 10)	intron (NM_011032, intron 2 of 10)	1991.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	6.40940489834027	6.2806115045086	6.17982635376684	5.12379154849131	4.67091491576486	5.26182319182561	-2.42561684744401	1.2042366301058e-11	1.91591054527425e-09
Merged-chr15-58829038-4	chr15	58828523	58829523	+	977.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5596.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.28874103034714	3.03514784688363	3.33345114297379	3.07085785503374	2.97736048520954	3.24087124787603	-0.550350776705402	0.406058733577718	0.780529555167911
Merged-chr10-57532493-4	chr10	57531994	57532994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019760)	promoter-TSS (NM_019760)	35.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	7.74590089934268	8.27766353246889	7.68559210034106	7.78831324344171	7.79822322822726	7.34310219952729	-0.389261776136498	0.166245178042584	0.541406214268778
Merged-chr5-24035118-4	chr5	24034590	24035590	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4400.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.16946337878691	6.4796968520128	6.290987381983	6.3247825551704	6.44675368757087	6.38972456667804	0.109890412363721	0.694017527636734	0.919141313420726
Merged-chr9-96393901-4	chr9	96393374	96394374	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29443.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	6.51850755535804	6.84601712596216	6.76393566107982	7.1833822620204	7.25961687758717	7.15284846426374	0.743352828475749	0.00328433099132149	0.0450515352993535
Merged-chr16-13257492-2	chr16	13256992	13257992	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 1 of 16)	intron (NM_001122667, intron 1 of 16)	1011.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	3.17427334997802	3.01280911378655	3.13418914537176	2.98725000187571	3.07038743257513	2.90485833846345	-0.517712235906915	0.442848962729047	0.803396339134839
Merged-chr5-105683347-1	chr5	105682847	105683847	+	666.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16622.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.5520811839475	4.72301881503166	4.49317707249043	4.1633884313616	4.13506856424658	4.20032440622934	-1.14370547042363	0.0107469569951837	0.105688783554573
Merged-chr8-119817119-2	chr8	119816619	119817619	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	23460.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.38780212182947	4.14863751691935	4.76694399338277	4.34720413528878	4.4966189660728	4.61349752431103	0.10031859289563	0.831875614543952	0.960522107234272
Merged-chr1-91457440-2	chr1	91456940	91457940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	1888.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	5.06443700188558	4.70717929002669	4.67256502131188	5.32485733744908	5.14916777216938	4.65239582403441	0.532731621721178	0.220499009112821	0.615020164597063
Merged-chr8-70653454-4	chr8	70652972	70653972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6266.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	4.40721199952157	4.43714536323835	4.12147446988262	4.39022036036568	4.14212928967135	4.24020005352375	-0.212633354717095	0.649811122068648	0.902361212367958
Merged-chr6-134243768-4	chr6	134243248	134244248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-152581.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.0759467362593	4.77116292357976	4.61783345508007	4.62084973022114	4.60479091583178	4.91687051379865	-0.30171375403281	0.476344364926064	0.822520021424582
Merged-chr7-45682905-4	chr7	45682414	45683414	+	735.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271578, intron 3 of 3)	intron (NM_001271578, intron 3 of 3)	-1108.0	NM_001358870	243967.0	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	3.08318459698214	3.16416250928764	3.4433984449423	3.42019738453384	3.2039209471146	3.46128582428093	0.522560532020414	0.411991972954229	0.784193340882693
Merged-chr17-46249159-2	chr17	46248659	46249659	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145353, intron 2 of 8)	intron (NM_145353, intron 2 of 8)	1079.0	NM_145353	28064.0	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding	3.31972311342891	3.29486815875529	3.69865648450358	3.56101244359918	3.35147062622345	3.40493017764388	-0.00214738730766206	0.99720136985433	0.99938731942812
Merged-chr5-72914255-4	chr5	72913737	72914737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113423)	promoter-TSS (NM_001113423)	-125.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	7.3728606269936	7.53310158244934	7.25396612381592	7.3742432513057	7.26971805591938	7.40113790363267	-0.0763419857943794	0.745055062388966	0.936032341688524
Merged-chr13-49273025-3	chr13	49272533	49273533	+	829.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-24327.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	5.27534464976333	5.24159430157219	5.31788196900643	5.24108753372356	4.99269414360687	5.35083115633261	-0.173303839439039	0.628940954752785	0.89397074295706
Merged-chr11-116390871-3	chr11	116390372	116391372	+	663.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	IAPEz-int|LTR|ERVK	22160.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	2.83953859760979	2.68864531171986	2.75541382172586	3.01729744173014	3.0427788753853	3.50512557444349	2.09712410721755	0.00546336302656914	0.0652217375487468
Merged-chr1-183553375-3	chr1	183552877	183553877	+	855.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134129.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	3.34563346695011	2.85781233750706	3.44504627350627	3.56355603066214	3.54272764830884	3.86296709148471	1.52207064777806	0.225982640190154	0.620989548379867
Merged-chr4-150515687-2	chr4	150515197	150516197	+	668.0	f0_balb.idr|f1_balb.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	136477.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.20834439704758	3.31434939705979	3.01819790069963	3.33055089839143	3.52968976665587	3.28044959048139	0.78934175606818	0.226066653085157	0.621097341012672
Merged-chr4-9027997-4	chr4	9027497	9028497	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-241296.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.94234068259123	2.69738262229187	2.83099609065139	2.60818903559657	2.9057246790555	2.51269912374254	-0.693840253658998	0.398662041834552	1
Merged-chr6-87743115-4	chr6	87742627	87743627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12258.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	6.04753820988158	5.28998139074789	4.77491629544556	5.35440018948071	5.20621603600425	4.89067902411029	-0.614590146307829	0.425960994033647	0.793472486678174
Merged-chr5-110417213-3	chr5	110416717	110417717	+	614.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 3 of 18)	intron (NM_001142642, intron 3 of 18)	-30090.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.25607324072963	3.84810795207963	3.86291578882007	4.03722826510825	4.08161651491288	4.35398721999019	0.426419530835483	0.41178810373153	0.784045307489855
Merged-chr10-81571765-4	chr10	81571303	81572303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3484.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	5.58662196343197	6.26708957199469	5.8840322943302	5.82605801401757	6.09506746797718	5.92127495843329	0.0112556506712371	0.974006792245261	0.994199951152398
Merged-chr17-34291771-4	chr17	34291259	34292259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3988.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	5.47653567095325	5.73033948338855	5.24133940572403	6.35620694501733	6.75324688859803	5.77026427553455	1.48894082533277	0.000126740595099329	0.00346446499245235
Merged-chr3-142594749-4	chr3	142594244	142595244	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010259)	promoter-TSS (NM_010259)	-103.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	4.74005786639853	5.0723095507326	5.29488487510931	5.57507467833686	5.45477193594031	5.35849848197449	0.855231413056433	0.0229918896415113	0.177199643555307
Merged-chr1-191733939-4	chr1	191733426	191734426	+	752.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	15531.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	3.86482716767217	3.77008738798894	3.79929535240347	3.73426519377746	4.02587870329775	3.8175427610604	0.191245621158031	0.716197365282991	0.926569584146506
Merged-chr2-103007629-3	chr2	103007058	103008058	+	833.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	65955.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.25581799930673	6.17481281648533	5.66000112561721	5.41555368570703	5.46681121921818	5.41861465349985	-1.14786330206776	0.000721180250044731	0.0139878709197487
Merged-chr5-144006248-2	chr5	144005748	144006748	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 6 of 14)	ORR1C1|LTR|ERVL-MaLR	8605.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	2.53062428749877	2.72557286865008	3.132227667807	2.90742303169442	2.67381594207976	3.03995168155445	0.302374411868255	0.704853117027541	0.922564171800367
Merged-chr6-123171248-4	chr6	123170753	123171753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1770.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	6.03640385369851	6.15281755727037	6.13298687161686	6.04405977201126	6.06266510464641	6.0628663092046	-0.0871150284748554	0.758493334045258	0.940170616860639
Merged-chr16-58498595-4	chr16	58498087	58499087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24839.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.20910887292437	7.21469883204067	6.76348580325694	6.93855486804119	7.18873228276191	6.9003500756215	-0.10115343628128	0.709405041372354	0.923961035007839
Merged-chr9-21018788-2	chr9	21018288	21019288	+	927.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	2848.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	3.53769179869919	3.33934079226697	3.67320736748599	3.42848215195989	3.16193435477827	3.64376297370008	-0.374856073581248	0.549346450112364	0.860273914502926
Merged-chr1-36571776-4	chr1	36571268	36572268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13387.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	7.28706414038587	7.0590730586298	7.25371316310018	7.21356222953605	7.3935906713746	7.20492136404137	0.115640343639429	0.630800137763031	0.894912420650784
Merged-chr9-56259839-6	chr9	56259373	56260373	+	796.937012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-98803.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.97572877256843	6.20569775806132	6.01547562856887	6.71338928370999	6.99497989002126	6.40459537251118	1.08270319374613	0.000334318118047468	0.00761718016607167
Merged-chr4-43286900-3	chr4	43286372	43287372	+	657.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177195, intron 2 of 28)	(TTG)n|Simple_repeat|Simple_repeat	19713.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.57489073549471	5.51154576171233	5.47240906659243	5.31583873322373	5.33553421940492	5.61794301355233	-0.198225687413402	0.554668984680033	0.86290101194412
Merged-chr11-51857923-4	chr11	51857451	51858451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-321.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	8.20093429722827	8.23233891504629	8.26948672483467	8.23347200321465	8.30152987683044	8.21789383887327	0.027860792971478	0.890233054730515	0.974472301756451
Merged-chr15-102408957-2	chr15	102408457	102409457	+	809.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013672, exon 3 of 6)	exon (NM_013672, exon 3 of 6)	2641.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	3.15788145276541	3.07514384283776	3.32804775043687	3.24374731100556	2.98740780436261	3.50193600844766	0.275711958042489	0.680062388130892	0.914139397449033
Merged-chr15-99259763-3	chr15	99259220	99260220	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-7759.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	4.72812695883741	4.67799000751149	4.86805306131495	4.47780717531758	4.39936663581938	4.59560731024994	-0.651092847951538	0.117243252080067	0.457311976431135
Merged-chr3-148325142-4	chr3	148324627	148325627	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	629508.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.79708154744473	4.77349556618638	5.23301125126817	5.06804388866924	4.94275703019911	5.35320537957849	0.392645618029038	0.331963952228615	0.723284088925227
Merged-chr1-161251255-4	chr1	161250737	161251737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-27.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	5.53241770008844	5.48490854582067	5.24132958472557	5.84133574648022	5.71537729353832	5.23593930469608	0.382465966904452	0.294115108451032	0.690754182844378
Merged-chr4-62287090-4	chr4	62286579	62287579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	650.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	7.03896663246805	7.29369315214029	7.30088581803606	7.73493321220937	7.74357891489511	7.50820214165187	0.672244953268189	0.00480031505236327	0.0595356409117667
Merged-chr5-115517671-2	chr5	115517164	115518164	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10988.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.46811195021514	5.30922955900903	5.90490357724583	6.27153076423068	6.2767945163901	6.62985768835156	1.44448131605595	1.75608751001904e-05	0.000652032706531301
Merged-chr19-46563152-4	chr19	46562653	46563653	+	846.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	10029.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	4.86562418838888	4.64794954952289	4.7881258569293	5.09471898954696	4.94716000833201	4.73437557994367	0.382286547588714	0.336992122351457	0.726949528325002
Merged-chr10-20005675-4	chr10	20005170	20006170	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	71144.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.5805093119592	4.73983787497719	4.20610330994336	4.66584144049633	4.92246130481599	4.81099439383378	0.621190927164758	0.166627227576129	0.542056390341485
Merged-chr1-39714178-4	chr1	39713669	39714669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145660, intron 2 of 14)	intron (NM_001145660, intron 2 of 14)	6820.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	3.81528591106824	3.79750680184933	3.33054590888741	3.52517478978457	3.41426014416785	3.69014808315105	-0.455592779945475	0.454219680105498	0.810104016757399
Merged-chr13-23761501-4	chr13	23760960	23761960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	-211.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	8.23441662202564	8.60800108038847	8.22789122310324	7.95869838348126	8.53667078746845	8.17104711192187	-0.170440215513703	0.512673996917465	0.84208176908739
Merged-chr6-39257969-3	chr6	39257570	39258570	+	674.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51297.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.06568934319767	5.13680844711213	5.44272086991757	5.13892688574069	5.21360212998277	5.23975727608195	-0.032561310893613	0.928514869340558	0.983810947287576
Merged-chr10-78139856-4	chr10	78139341	78140341	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29927.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.19454470310122	3.63049642238764	3.75029756117216	3.88255126509873	3.3195787901149	3.41730416156016	-1.048277816748	0.101960794735205	0.425901295598742
Merged-chr6-13606620-6	chr6	13606185	13607185	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	L2|LINE|L2	1413.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	7.58401159159232	7.56564969594148	6.93088504601091	7.37148924017873	7.72092421107155	7.22552907961366	0.0879102171947713	0.766273961186763	0.942437273046488
Merged-chr11-11691867-4	chr11	11691375	11692375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	1698.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	7.45389632294803	7.61964900230232	7.05284508281851	7.23931032474475	7.43046917597772	7.21546860503798	-0.153779918488438	0.561320487921171	0.865407801976397
Merged-chr14-47505771-2	chr14	47505263	47506263	+	657.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	33202.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	3.47618134622367	3.69788005920084	3.85636158803956	4.42515862158882	4.3366015199358	4.66021186237807	2.41104433339105	7.57986405034992e-06	0.000315195066417549
Merged-chr2-167222288-4	chr2	167221815	167222815	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 4 of 9)	intron (NM_008968, intron 4 of 9)	18222.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	2.27019817420095	2.29273369025834	2.42890108885952	2.15985402201707	2.10468441887094	2.04601668515908	-1.70393592423143	0.0684139503231049	1
Merged-chr5-33377791-2	chr5	33377291	33378291	+	867.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-905.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	5.88340223036285	6.28453466389554	6.51633542122474	6.25072142979586	6.24625309114492	6.5589399219734	0.178679827362734	0.575102944317782	0.87094931637326
Merged-chr2-85037179-4	chr2	85036676	85037676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136081)	promoter-TSS (NM_001136081)	56.0	NM_182990	20833.0	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	7.30150511094285	7.4654070922292	7.00153925784286	7.42531496047113	7.47968871270261	7.18085427294743	0.140158373462422	0.58770719706876	0.876033486335519
Merged-chr3-84853000-3	chr3	84852503	84853503	+	715.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	-11142.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.64995992110477	3.69482827705098	4.065308784516	3.34333703876671	3.37847964935612	3.39649271962136	-1.57385967628606	0.00880546453832046	0.0921717769934958
Merged-chr5-118633257-4	chr5	118632762	118633762	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72543.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.43352019255485	4.25736009113783	4.12327370740767	3.85633881155523	3.65795543935715	3.78185032308592	-1.58578046873105	0.00209027867124316	0.0319544199295978
Merged-chr3-31089212-4	chr3	31088682	31089682	+	801.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5876.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.57581657036396	3.37046416833107	3.57290844732959	3.98557252943927	3.7588983034264	3.80388175279542	1.18500854146582	0.0339723655746255	0.225474403344775
Merged-chr14-50944133-3	chr14	50943635	50944635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-168.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	5.98583091340873	6.21033962845291	6.3887967340126	6.17434166626163	6.1058869275881	6.51485992442824	0.117846137735482	0.700949873422401	0.921065601246484
Merged-chr5-18037496-2	chr5	18036996	18037996	+	820.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	74926.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.03308870422496	3.2585545315825	3.36706661508437	2.85479388031678	3.01214796027051	3.27897169389684	-0.729615655695505	0.293517434186799	0.690340231295885
Merged-chr19-8718515-4	chr19	8718009	8719009	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-4612.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	3.00915388661212	2.62873336261907	2.95628029171767	2.89910650885538	2.76029496565816	2.71980644419865	-0.391064294528576	0.602703629568624	0.882397657327329
Merged-chr10-25427580-3	chr10	25427110	25428110	+	645.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	19242.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.29116344119279	3.20029717181064	3.06161846634366	2.82429092450348	2.70214777354217	3.07536192638897	-1.5696599241218	0.0319560107739615	0.216893439819088
Merged-chr15-38296864-2	chr15	38296364	38297364	+	942.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001289471, exon 3 of 5)	exon (NM_001289471, exon 3 of 5)	3036.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.48194833229608	3.24947220958871	3.5716938748549	3.38486797241846	3.29313444804606	3.78616378463341	0.221588958614398	0.72264993894468	0.928882134885978
Merged-chr19-53369939-2	chr19	53369439	53370439	+	923.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 4 of 5)	intron (NM_001008543, intron 4 of 5)	20102.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	2.78034194098455	2.8000325779054	2.97171150914159	2.6805245825805	2.79801817294476	3.04305250386256	-0.0269427905835209	0.970426296783146	0.993459421031373
Merged-chr6-97856425-4	chr6	97855909	97856909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	49351.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.7588230716497	7.57220848972888	7.67969632400824	7.50974497232877	7.66913119191771	7.36590870347551	-0.208333519844555	0.37008849027752	0.754577875496493
Merged-chr13-56354020-1	chr13	56353520	56354520	+	784.5	f0_balb.idr	Intergenic	Intergenic	-8880.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	6.2953602041017	6.35087686280444	6.28984945351016	6.00360675262296	5.851575175078	5.96261940299137	-0.643115572664312	0.022868605592329	0.176539470141001
Merged-chr7-122261756-3	chr7	122261254	122262254	+	805.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27371.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.15466029915213	4.37735292143816	5.3293681269566	4.48140539228305	4.62002680809945	4.86808108866234	-0.779466613829328	0.110161008864689	0.443473920929912
Merged-chr5-63966548-4	chr5	63966067	63967067	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2330.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	4.30827553413792	4.27111057962073	4.50268510466892	4.61307515488684	4.4849741435499	4.93287062321354	0.799484497277788	0.0728669440097227	0.354630208642511
Merged-chr5-102048314-2	chr5	102047814	102048814	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	21607.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.59877678650709	4.29388739034433	4.67461588754531	5.05146030043921	4.71113869534247	5.02862153048716	0.947692335277811	0.0269163147058865	0.195381027134904
Merged-chr5-101907497-2	chr5	101906997	101907997	+	550.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 29 of 67)	exon (NM_172882, exon 29 of 67)	142367.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.22609396831973	2.2981151989058	2.62081896320479	2.16746797151579	2.12577397357615	2.32753736181103	-1.24463763957041	0.167079961452797	1
Merged-chr5-18012113-2	chr5	18011613	18012613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	49543.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.72860461215336	3.80091153700386	3.81016202087875	3.76970344003819	3.64950308898292	3.92769090534209	-0.00175341470269537	0.997360781803934	0.999438741884046
Merged-chr18-62229973-4	chr18	62229472	62230472	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49872.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.51441627069236	4.75276519414128	4.52555335624967	4.8766093345615	4.85710489369875	5.04793616230932	0.722453659766639	0.0754417578324989	0.361682287723356
Merged-chr12-87471089-2	chr12	87470589	87471589	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025507, intron 1 of 13)	MTD|LTR|ERVL-MaLR	1210.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	4.9591770191428	4.97896048238703	5.07539208007293	5.57348848585841	5.62211727168295	5.46242749538341	1.12231935326461	0.00109577043745796	0.0193376175100747
Merged-chr11-72782296-4	chr11	72781796	72782796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024926, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	13543.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	4.80384880195865	4.78843017224119	5.07358617865482	4.83425211575011	4.79417506884728	4.86207375838209	-0.127363930810932	0.744478523211327	0.935982277711273
Merged-chr10-7062760-3	chr10	7062257	7063257	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39572.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.95817660682029	4.66554004656072	4.637157799108	4.55285030884552	4.25949825629917	4.53784386049392	-0.773640774588506	0.0758647147171747	0.362566633737632
Merged-chr3-81983790-4	chr3	81983303	81984303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-8075.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	7.05833225911613	7.39987294462993	7.11204079902462	6.92326901257818	6.98940076931074	6.92753454639413	-0.386250363203328	0.124032947626068	0.471278757298044
Merged-chr6-91685138-4	chr6	91684641	91685641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	1074.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.28628438146391	7.42623376347579	7.43575355962487	7.41738162679391	7.28497048242807	7.32104898198795	-0.0608617275333945	0.790468764259054	0.949507368689168
Merged-chr6-129433520-2	chr6	129433021	129434021	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	18479.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	5.96061197778896	5.82542396098015	5.9388238079048	5.90576483714312	5.76954143197698	5.97672274680559	-0.0503178117433449	0.866900828677828	0.969143747903519
Merged-chr2-128782392-4	chr2	128781873	128782873	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-35930.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.91966714799739	4.86662669616262	5.44908264437314	4.84993235652786	4.99355131426862	4.81567462195833	-0.425964366981027	0.303203215027625	0.699862332768671
Merged-chr17-46254327-2	chr17	46253827	46254827	+	913.875	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111142, exon 1 of 6)	5' UTR (NM_001111142, exon 1 of 6)	162.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	3.11962153052308	2.87316379620095	2.95971682839996	2.99894234446966	2.61264301022855	2.84773774655597	-0.792658903688253	0.288735921233018	0.686124851873233
Merged-chr8-126572495-4	chr8	126571976	126572976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20960.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.41016168483524	6.1743472538761	5.8105567436008	5.45875157135443	5.45211215692989	5.65657662983348	-1.15752848607117	0.000498392519011815	0.010466997658237
Merged-chr17-5630412-3	chr17	5629912	5630912	+	878.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1F2|LTR|ERVL-MaLR	137812.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	2.84149904695663	3.02193110438855	3.17623594871169	2.96557119435613	2.7866877403593	3.35214663411251	0.150704981132841	0.836223398210416	0.961960888484752
Merged-chr2-22928449-4	chr2	22927967	22928967	+	752.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149721, intron 7 of 10)	intron (NR_149721, intron 7 of 10)	32945.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	3.02731693686614	3.03682016286719	3.04609311215081	3.09734354514174	3.09486223699555	3.1761888046456	0.379216509673794	0.557802263271121	0.864360963073664
Merged-chr3-105046098-3	chr3	105045590	105046590	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	6863.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.933566941659	6.99914131029437	7.03297983014433	7.23072554050026	7.45182267548073	6.92248845299109	0.368889142767253	0.159027144465722	0.531013709888191
Merged-chr14-59201115-4	chr14	59200627	59201627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360611)	promoter-TSS (NM_001360611)	-101.0	NM_027764	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	7.39210366104427	7.42192382616114	7.09556804143672	7.26853360592151	6.8045952967089	6.77328732895841	-0.518201021507748	0.0609016274243183	0.319755622572778
Merged-chr9-24298413-4	chr9	24297923	24298923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175678, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	200405.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	5.05995545745551	5.05318951878766	4.77995094776835	4.93063046659555	5.00823419043674	5.38357690754424	0.280838164380401	0.477089484490014	0.82311231975248
Merged-chr4-126126937-4	chr4	126126401	126127401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 4 of 10)	intron (NM_028800, intron 4 of 10)	-21102.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	5.62418663043023	5.44841266015577	5.86056699774263	5.35206407982658	5.27218877308792	5.46333063241136	-0.549094822099589	0.109132927276702	0.441427850715675
Merged-chr16-23309292-2	chr16	23308792	23309792	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	MER5A|DNA|hAT-Charlie	18822.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.15389184022601	3.31863362374365	3.24297688780782	3.14304893118312	3.17332436874256	3.4756140480316	0.100010630879092	0.875032922022962	0.970842352575132
Merged-chr1-54565604-3	chr1	54565099	54566099	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	4.37861095523332	4.28376516158636	3.79924358710487	3.90867107905036	3.61349312830129	3.92592141766567	-1.10760655791802	0.0443865870226059	0.265373175053652
Merged-chr10-68125193-4	chr10	68124686	68125686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	145616.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.89497898540122	6.10732855641313	6.0216396000615	5.99379974525298	5.9464838233248	5.61876070081486	-0.239030417388426	0.442731144687612	0.803309923833629
Merged-chr9-107565285-2	chr9	107564785	107565785	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019742, exon 3 of 3)	3' UTR (NM_019742, exon 3 of 3)	2030.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	2.98985122657213	3.29225324227015	3.2708019028403	3.32051913221498	3.0719736148497	3.34208600799004	0.229598972181281	0.726281834528605	0.929763581417168
Merged-chr7-89308565-2	chr7	89308065	89309065	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	30222.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.24820916993649	5.11155320081665	4.98521978485812	5.33138901488091	5.25310049589503	5.1587951885439	0.257198122074566	0.473494455910602	0.82090428702971
Merged-chr11-4544524-4	chr11	4544068	4545068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	B2_Mm2|SINE|B2	50247.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	5.33802124335827	5.12970780330889	5.23100010378929	5.5499692893351	5.5670298753874	5.3915251704502	0.539710044483968	0.112918269577934	0.448889368641761
Merged-chr1-20941562-3	chr1	20941064	20942064	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10062.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	2.81063622792998	3.23011769700051	2.94780214513898	2.65758725559279	2.59214444632301	3.07858311853591	-1.07794718275156	0.176123190483255	0.556291656595492
Merged-chr5-129008040-4	chr5	129007572	129008572	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	500.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	6.19321221769078	6.24536268621999	6.24678250041224	6.08548996285093	5.90486691413148	6.00671500120603	-0.393433267139046	0.165892731893183	0.541084333635215
Merged-chr3-122620050-8	chr3	122619660	122620660	+	821.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153118)	promoter-TSS (NM_153118)	-446.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	3.79977635042688	3.70497662356889	3.46453372744791	4.13206407514763	3.66516890114777	3.87410002570716	0.745516415136934	0.195628700972482	0.583395666913835
Merged-chr16-44066584-4	chr16	44066086	44067086	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-24578.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.28138678825616	4.21768739420187	3.95281014723882	4.61101535064484	4.28705484866814	4.32530845569824	0.660424369446414	0.170286322919402	0.547643657769783
Merged-chr9-95612388-4	chr9	95611905	95612905	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-25223.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.92535704001045	3.78158016756861	3.81339115331241	4.06087635792872	3.34901819959834	3.78026331722374	-0.248876799229208	0.678553454889075	0.913498554171186
Merged-chr11-106134869-4	chr11	106134369	106135369	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	25058.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	7.52141306442641	7.38476747775906	7.16964533623553	7.47919458654298	7.87903502095522	7.42774428231178	0.36213793195606	0.164909946949401	0.539613310227131
Merged-chr1-36073825-3	chr1	36073329	36074329	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	5429.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.59793318537301	7.39520501951934	7.17276441317567	7.09975784765526	7.49418846202713	6.67151175512019	-0.382395693172463	0.213034276456749	0.605719657689159
Merged-chr11-32580672-4	chr11	32580181	32581181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	47415.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.19992113731606	3.96846341045565	4.18816281852558	4.12857513260436	3.97948407242201	4.21102070913311	-0.0491337210393129	0.919354915919773	0.982021663622864
Merged-chr2-34905165-4	chr2	34904691	34905691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028716, intron 6 of 14)	intron (NM_028716, intron 6 of 14)	8785.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	5.88883928955672	5.92130869314172	5.9725765882861	5.9734200695595	6.14868552613552	6.20533743900547	0.321197886324455	0.270027311564074	0.667038426427379
Merged-chr5-149051865-8	chr5	149051297	149052297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313894)	promoter-TSS (NM_001313894)	-181.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	7.55070814724378	7.25549974471613	7.5113005138273	7.36123322610084	6.95344337416189	7.33188717289962	-0.328637167997229	0.204856716017463	0.595546000502448
Merged-chr16-33894685-4	chr16	33894189	33895189	+	978.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	65024.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.48536218406695	5.33338643914681	5.52258738400207	5.48883944435709	5.48742379302451	5.44045053695409	0.0570062678871529	0.862653129303317	0.968083292979043
Merged-chr3-97998522-2	chr3	97998022	97999022	+	905.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15016.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	2.61799063304834	2.4370573466852	2.85967428026226	2.61200025880325	2.49736775608493	2.81669141908792	-0.00271168147532455	0.997295127022796	0.999426356843159
Merged-chr16-18425880-3	chr16	18425391	18426391	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	-526.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	6.6621032560168	6.76835298470146	6.45427626037725	6.74649164617823	6.72937898416017	6.53262222251354	0.0557766253507052	0.834486373587053	0.961319929864283
Merged-chr3-135402502-4	chr3	135401986	135402986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20947.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	3.31406362116697	3.11739932673447	3.33685083452954	3.16998324126506	3.08278671980525	3.35338133371526	-0.236150377028704	0.711272360190979	0.924628659085065
Merged-chr13-94965249-4	chr13	94964737	94965737	+	828.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11107.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	3.54416397843474	3.57363292120453	3.50408846164399	3.38479732157673	3.79140425941398	3.28027626683145	-0.085846429558675	0.890678124670318	0.974547949258886
Merged-chr6-125426593-4	chr6	125426108	125427108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46104.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	7.06088334554863	6.91241342458267	6.71477531659403	7.08795453490449	7.19130944819387	6.74053482993844	0.183765788193253	0.498791670042761	0.834135868113764
Merged-chr1-154062044-3	chr1	154061526	154062526	+	765.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-139161.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.17726687266961	4.22640569383975	4.04763233472498	3.99451368038989	4.10484866770074	4.11656201934716	-0.243704626980564	0.609908841845101	0.885337129064707
Merged-chr1-37002266-4	chr1	37001775	37002775	+	801.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-62748.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.07282111600532	5.11406245389818	5.26011397876258	5.21551976012783	5.10498781239805	5.35281582519117	0.153954797327513	0.667130518282905	0.908550135279124
Merged-chr18-38343634-3	chr18	38343138	38344138	+	893.7666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4645.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	3.16721130091761	3.16878792296184	3.45523469445149	3.09199142229569	3.02412568664757	3.20462794554092	-0.683450980144521	0.293306521089776	0.690221391260893
Merged-chr13-101696574-2	chr13	101696074	101697074	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3944.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.82547990798567	5.87285702426981	5.9145268148377	5.76476748240932	6.33345104456039	5.95204483259154	0.318587082765874	0.326822189768726	0.719176493964409
Merged-chr2-49425794-4	chr2	49425284	49426284	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-25702.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.41681437134445	4.24701493196414	4.53285770329028	4.59024732572585	4.12665645037306	4.7123912991954	0.231308733079114	0.628260916386092	0.893577294752216
Merged-chr11-54161023-4	chr11	54160526	54161526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	52262.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	3.48156850630296	3.05517190351858	3.00313265728127	3.17919230597519	2.96915542148428	3.42536117277336	-0.00550904017149159	0.993804644932783	0.998795738347524
Merged-chr18-5689603-2	chr18	5689103	5690103	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	96956.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.84365014182457	3.02032385533628	3.05856115746282	3.00966798521151	2.90357678941999	3.29506951019593	0.442002949788265	0.523670904738725	0.848362770949337
Merged-chr10-52382133-4	chr10	52381647	52382647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-23.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	7.50675471838082	7.47908807373584	7.54953971637237	7.36536103578658	7.35905320321352	7.39403313176843	-0.20395962409938	0.356746696751514	0.743448231367782
Merged-chr7-81371913-1	chr7	81371413	81372413	+	565.0	f0_balb.idr	intron (NM_001357107, intron 1 of 9)	intron (NM_001357107, intron 1 of 9)	562.0	NM_001357107	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	2.59070019320332	2.74575187922417	2.70823853627079	2.53727030181902	2.58587598848025	2.46034749247917	-0.864231894233491	0.27114057970959	1
Merged-chr3-87355819-1	chr3	87355319	87356319	+	575.0	f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.57829475994306	4.25873467673544	4.45440458842221	5.21405634735666	5.26852956285187	5.07997799091631	1.72891093030138	2.31625436540039e-05	0.000828237615970073
Merged-chr11-100325214-4	chr11	100324659	100325659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5210.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	7.22993618323455	7.14650309722892	7.10164308865341	6.99314677415363	7.09516402304394	7.28948934443098	-0.0552449478520778	0.819639732015138	0.957285308539088
Merged-chr5-123142983-4	chr5	123142471	123143471	+	858.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040398, exon 2 of 17)	exon (NM_001040398, exon 2 of 17)	778.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	4.7631300746368	4.66890126450819	5.24021729323677	5.13985634135054	5.06825320739592	5.36060043944541	0.613997543088901	0.130717075030736	0.483186228268893
Merged-chr8-26158775-4	chr8	26158276	26159276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199042, intron 1 of 2)	CpG	607.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	7.63357183510865	7.79468863108692	7.7400246309412	7.53143290805513	7.44549125013764	7.59011317375466	-0.297082411105537	0.179886579049277	0.561356228230283
Merged-chr4-53125276-4	chr4	53124775	53125775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34620.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.57099368303871	7.39630182787896	7.44458656283617	7.45451296349868	7.72053789466413	7.27793882053273	0.0498933694723736	0.839784310742418	0.962784121274377
Merged-chr18-6241454-4	chr18	6240954	6241954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	70.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	7.74357272000169	8.0129025428937	7.80058682173861	7.85413529679661	7.72105530859402	7.73671089559526	-0.127124991945191	0.570470648520672	0.869212996193153
Merged-chr2-90533229-2	chr2	90532711	90533711	+	690.5	f0_c57.idr|f1_balb.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	47436.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.90762553689714	4.82785864816006	5.42021466897996	5.58793293837617	5.31801431468438	5.20980950644099	0.650255907728287	0.101274328871592	0.424440130792152
Merged-chr10-100138710-4	chr10	100138149	100139149	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122828.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.71863519454482	4.5537995499193	4.64017785889475	4.86819567206572	4.79497263501964	4.44438696191991	0.202913293224546	0.631274679157368	0.895122791781359
Merged-chr11-103981879-2	chr11	103981379	103982379	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15008.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.17536022332623	6.07087879308139	6.39217091819963	6.0010561500794	6.02744524815469	6.26663928735581	-0.194887523298103	0.50968165582646	0.840476252363464
Merged-chr14-73444888-2	chr14	73444388	73445388	+	982.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-59599.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.55076222193815	7.30203637752284	7.43662404632436	7.30424953447611	7.48650363170297	7.46282125264347	-0.0185136058494932	0.936963153529548	0.986037792257163
Merged-chr2-166235092-4	chr2	166234593	166235593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38815.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.90724204787147	3.76548842094519	3.81988375301086	3.70513811385	3.67972187992293	3.88898610577099	-0.254593529010601	0.628974728450812	0.89397074295706
Merged-chr2-160048296-4	chr2	160047793	160048793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	31640.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.00324551690966	5.53585628854404	5.95107156166144	5.52025614151679	5.3690908611183	6.01152676209967	-0.349981742804006	0.342663358224701	0.731516324791908
Merged-chr12-103343659-4	chr12	103343159	103344159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	12342.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	7.19382581608705	6.99240902186597	6.63014903334383	7.21394978723218	7.26348746909053	6.97704782640285	0.290684325555979	0.291501006935231	0.689089386291402
Merged-chr1-155081901-2	chr1	155081401	155082401	+	564.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151545, exon 1 of 7)	non-coding (NR_151545, exon 1 of 7)	1363.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	2.51933882744978	2.47389615131116	2.53322028346292	2.20890016058773	2.31195147670746	2.3510877975057	-1.44855077780829	0.0906747584129868	1
Merged-chr5-150233595-6	chr5	150233080	150234080	+	929.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26350.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	3.34105591461593	3.25672750759432	3.41416643770061	3.5116187519257	3.46165783480875	3.83668864995805	1.00595666842804	0.0930986159915099	0.406451001596178
Merged-chr19-29805192-4	chr19	29804691	29805691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172836, intron 1 of 7)	CpG	818.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	5.2592459431647	5.45653565797224	5.49335672025592	5.25644322112708	5.16986100307851	5.47187695679995	-0.214663494690915	0.539293990201886	0.855849474290651
Merged-chr5-129940153-2	chr5	129939653	129940653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1956.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	3.09781335995823	3.22914754462394	3.20352039412252	3.09627797572172	3.06434724265754	3.10129998524284	-0.400907780115318	0.53217035118437	0.851971173271146
Merged-chr5-149184443-4	chr5	149183931	149184931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286825)	promoter-TSS (NM_001286825)	-129.0	NM_001115153	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	7.70889051829602	7.53161876103406	7.53761826633935	7.92074748731761	7.99282361625469	7.47994714251325	0.330341469565075	0.185409282115382	0.569470877644115
Merged-chr17-36031954-4	chr17	36031446	36032446	+	964.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010398, intron 2 of 6)	intron (NM_010398, intron 2 of 6)	755.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	7.67583872988019	7.89656084764798	7.46307400216968	7.44025677004414	7.7613375036168	7.69500440327373	-0.0820820300513131	0.741362810519154	0.934809943386314
Merged-chr6-129406215-4	chr6	129405719	129406719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204239)	TTS (NM_001204239)	-2643.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	6.46810614481929	6.52367200871912	6.66926208022361	6.51392416291477	6.89805381890812	6.6962889145959	0.266637012059416	0.327732224192479	0.719884451588072
Merged-chr1-106759749-4	chr1	106759242	106760242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316750)	promoter-TSS (NM_001316750)	0.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	7.57856398520577	7.99203534528597	7.76172305744442	7.4038849117056	7.84061878612088	7.56249901808634	-0.244355747789756	0.341647644569014	0.730935106878357
Merged-chr17-29006985-4	chr17	29006481	29007481	+	901.9208369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	1014.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	6.16224150476782	6.54347290340128	6.48450291821952	6.50444671891295	6.63462750566384	6.41587744764313	0.197678978363809	0.485660909468093	0.82753635220313
Merged-chr11-120825795-2	chr11	120825295	120826295	+	844.5714109999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027745)	TTS (NM_027745)	-1248.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	3.47121160124418	3.04816751395644	3.21122387585839	3.19916229655977	3.23547231325179	3.10315926422132	-0.308794347139492	0.64046071394073	0.898483031109382
Merged-chr9-96719884-4	chr9	96719376	96720376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359960)	promoter-TSS (NM_001359960)	-26.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	8.26862821099511	8.32735453509578	8.08852129128071	8.14765941957565	7.85232699974468	7.71644554432332	-0.44305808284032	0.0592731868215282	0.315364173762253
Merged-chr11-78985733-2	chr11	78985233	78986233	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-809.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	4.55867153514606	4.2151190834024	4.50024079691098	4.49047249770646	4.54636828809119	4.39510369287918	0.135525450307201	0.760760368028918	0.941002855722266
Merged-chr7-66134378-4	chr7	66133881	66134881	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	24866.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.26542911848813	5.10103899917138	5.43273560408355	5.12972590736482	5.18372998441658	5.01712282026795	-0.298865565022546	0.411263294083418	0.783877099438722
Merged-chr7-97107626-2	chr7	97107126	97108126	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	25875.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.93288149471587	4.89159077990766	4.97306511801364	4.81212707427314	4.72481941778261	5.13469540829486	-0.0926679236525077	0.813986312057579	0.955984497572397
Merged-chr15-96635663-2	chr15	96635163	96636163	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	B2_Mm2|SINE|B2	6299.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.41671986178144	3.50026880746541	3.4766625586654	3.4649026790582	3.33302033933698	3.26158397762576	-0.409213132646373	0.491488756878976	0.830572128647886
Merged-chr5-64380513-2	chr5	64380013	64381013	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87429.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	7.18179121176131	7.20590856739801	7.25634807680682	7.25552194091215	7.32961541716291	7.42243038585291	0.181583606568546	0.429042423958798	0.795570481157701
Merged-chr17-17448871-4	chr17	17448374	17449374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46188.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	7.43923972302813	7.51133710485149	7.13663871488153	7.21965862859706	7.38833213007614	6.95930875280172	-0.250043122745569	0.339908804663904	0.729608383720945
Merged-chr11-100620284-2	chr11	100619784	100620784	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019795)	promoter-TSS (NM_019795)	-116.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	5.81535550551712	6.05072755010511	5.763485971652	6.11897222160335	6.14174954332355	6.11444573797363	0.405814486112806	0.17253672086667	0.551127428100383
Merged-chr15-57906845-4	chr15	57906335	57907335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5364.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.6732844534038	7.87105983088834	7.56081293813685	7.56907894669644	7.73238637686371	7.47461631389804	-0.160673237679447	0.494801176977584	0.832098796134741
Merged-chr19-37508174-4	chr19	37507673	37508673	+	919.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42245.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.00191900965665	3.97969391990304	4.01255017036125	4.39544893254439	4.45964423295038	4.40694665620462	1.17994388473206	0.0106663331909493	0.105181826517245
Merged-chr14-32174336-4	chr14	32173843	32174843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 6 of 9)	intron (NM_001033988, intron 6 of 9)	8554.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.87635977167559	6.89588349443471	6.83944006418822	7.00636934656533	7.01088691873672	6.60378600228154	0.0409097762166827	0.876087398555376	0.971185372218754
Merged-chr8-90828283-1	chr8	90827783	90828783	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-552.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.15855416977013	5.20749072652785	5.10968347059021	4.64788999649615	5.04689485347506	4.68165046572619	-0.731328413459262	0.0678110010275857	0.340787447816836
Merged-chr2-170221129-4	chr2	170220634	170221634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78459.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.85131256719213	5.27431820075118	5.58011334870355	6.2167043859489	6.09948670244415	5.78325172463068	0.818860069802606	0.01927791627348	0.15758731949616
Merged-chr9-16114952-3	chr9	16114449	16115449	+	819.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240393.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	5.2466362595459	5.28310174975526	5.2405421995887	5.44052228779416	5.4614663842612	5.27192362498597	0.283060766586599	0.405305367790576	0.78008533130825
Merged-chr7-67241851-2	chr7	67241351	67242351	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19235.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	5.89843875339213	6.06557737191555	6.26195279538549	5.87814865404575	5.68085337416486	5.84976533585708	-0.484065828584022	0.117012707761047	0.4567645612395
Merged-chr4-132805612-6	chr4	132805184	132806184	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-9320.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.90222783249657	7.56772272755246	7.45012477315621	8.08377503717437	8.29618192859075	7.94830520867076	0.657688821664948	0.00827629291412624	0.0881710990768805
Merged-chr5-107980135-1	chr5	107979635	107980635	+	798.400024	f0_balb.idr	intron (NM_026062, intron 1 of 4)	L1MB2|LINE|L1	6942.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.95417208155445	4.71241320744442	5.35984360496325	4.88629189213893	5.02728739724272	5.3666582141816	0.162235303924071	0.700599442730009	0.920942800747636
Merged-chr4-136147043-4	chr4	136146527	136147527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3205.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.65797855544749	7.74054413544117	7.56815169986859	7.61194246627981	8.02535334801749	7.76280754364628	0.225976348853869	0.342601684447061	0.73149780502094
Merged-chr9-95694740-2	chr9	95694240	95695240	+	734.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_029620, exon 8 of 9)	exon (NM_029620, exon 8 of 9)	55618.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	4.4374777451004	5.02921828453465	4.7015655750274	4.71575672078976	5.14119228427895	4.99338555924153	0.473075436185955	0.28343310922282	0.681376161050487
Merged-chr2-52885114-6	chr2	52884597	52885597	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	27229.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.43258036575302	6.56857133960195	6.70246158637362	6.45544874761645	6.69711367589697	6.71485918679919	0.097518274738575	0.717422988144379	0.927077249271794
Merged-chr7-25759476-2	chr7	25758976	25759976	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 19 of 19)	MLT1F1|LTR|ERVL-MaLR	-4717.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	2.56058298226481	2.52243253463365	2.65642914483316	2.72487798934457	2.41619069138902	2.79070803975512	0.395293836267434	0.616899949808001	1
Merged-chr3-148804059-4	chr3	148803561	148804561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	150574.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.74147618458795	4.54318277798202	4.41498997521664	4.94946127972783	4.30854777041684	4.5725530849093	0.137911618760859	0.767527429525198	0.942617496111852
Merged-chr10-43994756-4	chr10	43994271	43995271	+	846.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	10075.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	4.37563795413575	4.33023173963953	4.26988351082394	4.61362543460352	4.43987832892455	4.59758675302126	0.55577917852806	0.201201860677017	0.590759350184633
Merged-chr13-113438319-2	chr13	113437819	113438819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64525.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.13246634669796	3.72351655920473	3.97036186645936	4.11995046779802	3.76471856654653	4.30768533406333	0.357539142703181	0.51150917671478	0.841435415581079
Merged-chr19-53529043-4	chr19	53528532	53529532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085390)	promoter-TSS (NM_001085390)	-286.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	6.91531045247594	6.80248927215873	6.57907855004612	5.62925922232499	5.09025852043686	5.25951972435189	-2.50677864460293	5.21199486653766e-14	1.24620594498524e-11
Merged-chr10-7037419-3	chr10	7036919	7037919	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302795, exon 6 of 6)	3' UTR (NM_001302795, exon 6 of 6)	-14234.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	3.18741529323408	3.35680313419852	3.14496731559476	2.8973698492675	2.65362469598734	3.10097031284396	-1.66152594680755	0.0271646720331107	0.196308064865786
Merged-chr2-62648808-4	chr2	62648306	62649306	+	928.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2551.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	4.30327553898253	4.26397457024482	4.44209474700555	4.62986100750725	4.32347573410597	4.58919553140606	0.468673504992173	0.292966925000608	0.690053425164737
Merged-chr8-125517985-3	chr8	125517494	125518494	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	RSINE1|SINE|B4	-25161.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.59730344416183	3.95095204678235	3.86861540230896	3.91387996780012	3.70003406510032	3.73300614450512	-0.0937340931701355	0.863342429612506	0.96822816879546
Merged-chr10-88204460-3	chr10	88203966	88204966	+	711.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026070, intron 2 of 6)	MERVL_2A-int|LTR|ERVL	3369.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	2.71988885397572	2.80610629181453	3.05981922429655	2.65319070928531	2.63232598220371	3.02106020087723	-0.452970885032752	0.551954837217105	0.861546661145201
Merged-chr4-141060686-4	chr4	141060188	141061188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145958)	promoter-TSS (NM_001145958)	-143.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	5.57973923556973	5.48316068736494	5.26641849759533	5.54709916022346	5.45689445533469	5.26338865273812	-0.0470761912772565	0.891299677028226	0.974795270136864
Merged-chr3-84345576-3	chr3	84345081	84346081	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34340.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	4.61462881733022	4.71822495671035	4.8784495646366	4.26234222824284	4.32087855349552	4.10778700484457	-1.24663768606288	0.00573067575547973	0.0674166645358345
Merged-chr10-4621206-1	chr10	4620706	4621706	+	703.0	f0_balb.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	9217.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	3.0914502324496	3.06465023924438	3.18785995252464	2.98485014105827	2.97531317080115	2.96723220925751	-0.6261258061369	0.344673410073632	0.733268181259122
Merged-chr6-119397311-2	chr6	119396811	119397811	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-8577.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	3.01175655862776	2.87595228388944	2.99184516943135	2.85848435706998	2.96856946033355	2.94485877388677	-0.162388799977062	0.812269914322056	0.955541410265645
Merged-chr11-116032746-2	chr11	116032246	116033246	+	724.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286006, intron 1 of 15)	B3|SINE|B2	2430.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	3.75545178577988	3.63645025494636	3.96118417861244	3.35940124418049	3.61834741007272	3.69533918781302	-0.752313788647602	0.191839783760927	0.578684294521097
Merged-chr9-40577366-4	chr9	40576852	40577852	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45969.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.95575744214318	5.29923084026	5.29483133599303	5.3763064421277	5.40878194189538	5.50448827094175	0.474885795138789	0.181672146424718	0.564138920563373
Merged-chr6-116666280-4	chr6	116665789	116666789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	L1MA4|LINE|L1	7547.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.10258130510347	5.74546160051645	6.21540833697201	6.30813457839009	6.13489477794763	6.27536835653974	0.358420171876491	0.241266109382092	0.638385260200477
Merged-chr4-134828092-3	chr4	134827562	134828562	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355501, exon 4 of 9)	exon (NM_001355501, exon 4 of 9)	25283.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	4.07489740946575	4.08100240878471	4.21453773515198	4.14358368506408	3.86329612996834	4.14762018173555	-0.204747583381084	0.676438441221051	0.912525597578286
Merged-chr12-76378708-2	chr12	76378208	76379208	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	ID_B1|SINE|B4	8442.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	3.57819793739641	3.54011173057707	3.33442592648947	3.70988757905562	3.73889203139636	3.69239536873913	0.765085406978294	0.179600518426614	0.56110368604883
Merged-chr7-19822783-4	chr7	19822282	19823282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-27.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	8.07129530852824	7.71162579229399	7.69803200132781	8.33508388289638	8.10758853412454	7.74446653125671	0.355499541776334	0.177247386765075	0.558207507586708
Merged-chr17-26468627-2	chr17	26468133	26469133	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39839.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.87605328679362	2.61049200496907	2.95290678350344	2.64786175228228	2.28895894257237	2.73026219827869	-1.39636659740544	0.117273427355264	0.457331522238446
Merged-chr14-32093812-4	chr14	32093241	32094241	+	831.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145460, intron 3 of 7)	intron (NM_145460, intron 3 of 7)	8013.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	5.48842709844495	5.79716710640846	5.52864975274055	5.66090858390829	5.56508897245996	5.77864111924844	0.0840009920384297	0.798413942064132	0.951930937621884
Merged-chr5-135935028-4	chr5	135934535	135935535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-394.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	7.37437367881276	6.88991402552834	7.25185224841575	7.05669767090382	7.22359727035251	7.01003246763876	-0.122645492561791	0.644115841803311	0.900067122451665
Merged-chr11-71253560-2	chr11	71253060	71254060	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027858, intron 7 of 12)	intron (NR_027858, intron 7 of 12)	-22827.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	2.93080516212788	2.89940088203079	3.13797521026541	3.99837098500162	4.17502608249682	4.26484273180865	7.5259896957486	2.3913299488914e-09	2.46564786105769e-07
Merged-chr18-36454498-4	chr18	36453978	36454978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026027)	promoter-TSS (NM_026027)	17.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	6.6111922280574	6.5673395624522	6.35722379333675	6.69385129555472	6.53998200096143	6.27271426739172	-0.0029881642072231	0.991533031429771	0.998275542424417
Merged-chr12-4279544-2	chr12	4279044	4280044	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 13 of 22)	B1F|SINE|Alu	45517.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	2.91629263297395	2.92002307118421	2.97816961818861	2.69156478725868	2.75470934039651	2.87301824640058	-0.840701878183053	0.237830595215259	0.634375314429454
Merged-chr1-185204060-4	chr1	185203546	185204546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-122.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	7.90960300260515	8.08824672798739	7.65341005121261	8.00776194517283	8.45158436047223	7.99270259592604	0.387090979908062	0.132689876871233	0.487490682768503
Merged-chr4-55598204-4	chr4	55597691	55598691	+	899.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65716.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.59927643399419	3.66898260462769	3.51285489670642	3.95248644781266	3.71514457573552	4.09005946078437	1.04992697691541	0.0584689557072747	0.312625939242444
Merged-chr3-31092728-2	chr3	31092228	31093228	+	759.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	4.04509059887291	3.7177389167725	4.02299110033362	4.38801724089297	4.19709992914631	4.09286310078968	0.869444046294347	0.0849249784585561	0.385870016249633
Merged-chr3-142560044-1	chr3	142559544	142560544	+	1000.0	f0_c57.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	0.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	6.84611196374385	6.66368955802097	6.83624842742386	6.90571472469137	7.19166994039889	7.20686692523586	0.500892159821535	0.0496217043248079	0.283385228102856
Merged-chr13-59002994-2	chr13	59002494	59003494	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195297.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	6.79726773829339	6.80131668393802	6.78736477284111	6.95092469319509	6.99294897066694	6.78408992852252	0.190787315861416	0.439820823559174	0.801408375858453
Merged-chr17-55945335-4	chr17	55944833	55945833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146249)	promoter-TSS (NM_146249)	-74.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	7.91422621744053	7.86109541724297	7.6404297373681	7.81715938912744	7.89308192086996	7.68764363436234	-0.013911883304262	0.950842375488477	0.988501616477738
Merged-chr7-127770823-3	chr7	127770284	127771284	+	937.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	969.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	5.39380635883605	5.27989778167307	5.43378272370189	5.08943351724949	5.26407074398294	5.28673629359348	-0.30201186504043	0.384094954095657	0.765293063085998
Merged-chr18-65490636-4	chr18	65490233	65491233	+	971.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59736.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	4.00266797440208	3.47836631836587	3.91055952638505	3.25645282885952	3.03444875563623	3.16828580866297	-2.69413993087011	9.68438766712993e-05	0.00275870773367527
Merged-chr5-100636979-4	chr5	100636473	100637473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37283.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	6.7763227841729	7.00862669572089	7.0089931985105	7.24580747552653	7.67879470638741	7.12011069559097	0.673395447700846	0.0139411861991685	0.126391176864286
Merged-chr9-118699965-2	chr9	118699429	118700429	+	729.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-11763.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.21181745684861	3.36449126698477	3.61674751060093	3.23889201593015	3.1011455280378	3.77862086114936	-0.010475663762924	0.987660755983996	0.997223245230291
Merged-chr11-106076504-4	chr11	106076002	106077002	+	965.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8400.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	3.72223372443901	3.6315316303186	3.81214888249669	4.0477581458771	3.92626986702894	3.98088796006988	0.845260917161968	0.101232551175898	0.424350534924137
Merged-chr11-70498441-2	chr11	70497941	70498941	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-6833.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	7.46604136990502	7.62632120149538	7.47851116838454	7.41632192135861	7.6053949317366	7.5152376729274	-0.0161575546993688	0.943344662880701	0.987377570608805
Merged-chr9-121641578-4	chr9	121641070	121642070	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026915)	promoter-TSS (NM_026915)	23.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	4.67326661457289	4.49025009799287	4.36841108735157	5.00717692552088	4.65016645230752	4.34098753545613	0.426354774729396	0.357147319236595	0.743779426322518
Merged-chr10-4041985-4	chr10	4041491	4042491	+	973.7083130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	68916.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	2.87116135355705	3.02372436704376	2.93639206836811	3.30405857341102	3.33186071729121	3.13571850830248	1.42348927990484	0.0348341303819174	0.228929651750934
Merged-chr8-119832468-3	chr8	119831987	119832987	+	889.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	MIR|SINE|MIR	8092.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.43394359429157	4.1589297962213	4.56344821397826	4.28682922788736	3.9967555967096	4.73698414965406	-0.0640291682386734	0.900580314477714	0.976864359165587
Merged-chr18-31634980-4	chr18	31634478	31635478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357555)	promoter-TSS (NM_001357555)	-150.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	7.53977606186921	8.08240459115431	8.11856254328766	7.00395792471729	7.14784013396731	7.09774200334911	-1.24720543804691	2.75506117306241e-06	0.000131673251055817
Merged-chr2-146512189-4	chr2	146511682	146512682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033348)	promoter-TSS (NM_001033348)	-178.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	5.63358922961551	5.61858527700581	5.70360050631754	5.96319472267535	5.8787585343993	5.79178018039951	0.423161248482908	0.165219908584134	0.54001097346129
Merged-chr13-63568033-4	chr13	63567516	63568516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG	-2281.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	6.38785421181357	6.44580389666095	6.38989976253758	6.8717548134922	6.9247124252285	6.21851868307221	0.501156281576271	0.101944769947166	0.425901295598742
Merged-chr10-18023014-4	chr10	18022512	18023512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359560)	promoter-TSS (NM_001359560)	78.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	7.60040209714655	7.90953389520049	7.73164154931903	7.75512112370427	7.55411808448606	7.337077744119	-0.274627336969055	0.263751252655362	0.661728154106659
Merged-chr2-45270764-3	chr2	45270264	45271264	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153322.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.04455528007507	7.12825297092908	7.13764734534563	7.07469674093277	7.22179427361886	7.23108422534848	0.112859000983283	0.631779583427845	0.895284049434373
Merged-chr12-3423393-2	chr12	3422893	3423893	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	Lx8|LINE|L1	3354.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	4.78948775287235	4.85583766609526	5.04192002276617	5.18693220397798	5.20017160524119	5.46910775057912	0.826033723898498	0.0267641513450235	0.194769241308091
Merged-chr9-45961970-4	chr9	45961449	45962449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	6.0249806046685	6.10956881594706	6.20970011983305	5.76703684772161	5.91890494573941	6.14903059114596	-0.287032254005836	0.340766430314467	0.730465856032309
Merged-chr14-21831183-5	chr14	21830709	21831709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011695)	promoter-TSS (NM_011695)	-352.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	8.01055269195575	8.17362169606863	7.93971954961886	8.15260000796909	8.10552106605683	7.63565627122441	-0.0776475773660739	0.752888529120845	0.938437724415593
Merged-chr1-80665922-4	chr1	80665414	80666414	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-562.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.17714071286856	6.45161761184542	6.08812931159865	6.08005104031848	6.57271169742245	6.27835788887279	0.131775254736966	0.671505886924565	0.910544648967134
Merged-chr4-141655987-4	chr4	141655491	141656491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	8124.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.76054442443356	6.5632558581267	6.65893148087218	7.06860103680421	7.23400101873375	7.08182589412923	0.725186139502598	0.00357907994483124	0.0479793916625613
Merged-chr18-63709296-4	chr18	63708786	63709786	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	591.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	7.05694798724703	7.15947591873107	6.69336765950303	7.06104718109549	7.13035563907589	6.53444669184473	-0.0713465622959299	0.810508625667567	0.955054272231421
Merged-chr18-73745090-4	chr18	73744598	73745598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	9381.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	4.75296941476291	4.78893926975334	5.22006386539841	5.17017769995064	5.0771348628454	5.34178468911653	0.57397781222631	0.143606082713168	0.505892249381763
Merged-chr13-74390442-1	chr13	74389942	74390942	+	855.0	f0_balb.idr	Intergenic	Intergenic	-13876.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	5.45174587261557	5.4405534682608	5.4282501446973	5.27484838672097	5.4906090555675	5.23870231665188	-0.176070349148379	0.605106240388639	0.883394857670054
Merged-chr15-59077345-3	chr15	59076834	59077834	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	4692.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.07409466730352	3.68374300636352	3.9439535935464	3.56249336590406	3.48482319875456	3.48923374227357	-1.35753176770201	0.0172278031973225	0.146214917221829
Merged-chr11-22952857-4	chr11	22952370	22953370	+	808.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-19135.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	3.43027295078398	3.50767236613506	3.69275832426914	3.53374639570342	3.30492860594369	3.85606297395149	0.113445196503326	0.851694953860901	0.96531854415899
Merged-chr6-128135877-4	chr6	128135343	128136343	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	7735.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	6.05611896807219	6.09637214673595	5.906038644768	6.59327766866644	6.95579032377021	6.27448458940802	1.02414780326172	0.00106538063549846	0.0189189114984623
Merged-chr9-13298064-4	chr9	13297548	13298548	+	994.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51092.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	6.58882881453146	6.65709752571194	6.68726665967119	6.58865767109397	6.61643679830678	6.43451556383898	-0.139161702072935	0.590931810375888	0.877301111216348
Merged-chr6-89643967-4	chr6	89643465	89644465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-23.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	6.48885915728574	6.88877426381044	6.84775311833919	6.70123482171738	6.6749084002288	6.64504784169091	-0.121021276718771	0.654178247684128	0.903708984834566
Merged-chr7-7300104-4	chr7	7299584	7300584	+	891.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011334)	promoter-TSS (NM_011334)	-527.0	NM_011334	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	5.12831448653072	4.56670030488652	4.78308323932829	6.23730318484373	5.56100345543377	4.98339981716888	1.66648197793248	0.00051843805696839	0.0107872452723745
Merged-chr11-75584880-3	chr11	75584385	75585385	+	741.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3194.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	4.60677308948423	4.74125156582509	4.48991632917621	4.57111024437291	4.69944213261124	4.68222699772926	0.0682755988696656	0.869132627007107	0.969772902205443
Merged-chr5-31468753-2	chr5	31468253	31469253	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360001, intron 6 of 12)	intron (NM_001360001, intron 6 of 12)	16317.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	5.68917157659996	5.5365300691439	5.76062191014425	5.58558253382141	5.68093771720197	5.49621478183568	-0.116091731425804	0.718304727028225	0.927293456311605
Merged-chr16-36940405-4	chr16	36939919	36940919	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5436.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	5.97141598467943	5.71346128041028	6.259019862835	6.57989294285612	6.72657300982789	6.12887661914824	0.871604032299238	0.00791151003113367	0.0853938158867
Merged-chr5-38082720-4	chr5	38082219	38083219	+	945.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	43489.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	5.53511985805512	5.88680782145253	5.72442939664841	6.09737858713409	6.32838947214297	6.30402492319418	0.905806559010841	0.00333546565029286	0.0455277929510447
Merged-chr11-101096571-2	chr11	101096071	101097071	+	773.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_155070, exon 11 of 11)	non-coding (NR_155070, exon 11 of 11)	-1136.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	2.87622611763683	2.95295866296485	3.07307116742009	2.87813460962752	2.89193283285128	3.14420415504519	0.0233950075620059	0.972884149018394	0.993897323428832
Merged-chr11-61866507-3	chr11	61866015	61867015	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11423.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	5.2346416946411	5.23791063753127	5.00680746061434	5.08929700624413	5.11215995910664	5.24255341662011	-0.0584146768185215	0.871269766438678	0.970222087171093
Merged-chr2-128698858-4	chr2	128698354	128699354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-61.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.75258433554376	6.35742905381555	6.59681155137831	6.73504800477036	6.75427483858897	6.2074736452276	0.0359416540016624	0.905999999305512	0.978576016264467
Merged-chr15-90310509-4	chr15	90310008	90311008	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-43202.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.41886509951033	4.41399521451973	4.2109870081226	4.0671138463842	4.37619589123633	4.18419951521302	-0.356711894004491	0.44830493180192	0.807187517914313
Merged-chr6-48555248-4	chr6	48554749	48555749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177736, intron 1 of 2)	RLTR42|LTR|ERVK	450.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	7.06308113444649	7.26366314685362	7.05795379279382	7.18240478198576	7.46781889572466	6.94813986930597	0.141051399726536	0.59484202440138	0.87924603206665
Merged-chr3-27187958-2	chr3	27187458	27188458	+	804.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	4954.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.17875186074584	5.87465203778175	5.88825374718505	5.76912441516789	5.84193741862734	5.47500270575885	-0.48853680711237	0.13335191113426	0.488442392114254
Merged-chr6-124304915-3	chr6	124304525	124305525	+	723.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 1 of 16)	intron (NM_001170395, intron 1 of 16)	374.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	5.48759186585864	5.47872094017242	5.26503274907377	5.04946675418641	5.3136788475715	5.26404004060207	-0.406563910339911	0.248361168631568	0.645478389539464
Merged-chr9-21126525-2	chr9	21126025	21127025	+	726.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205312, intron 3 of 24)	intron (NM_001205312, intron 3 of 24)	4750.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	5.44881643663734	5.36179745364576	5.74673357259378	5.47527638785472	5.52703768543341	5.73478818355689	0.113483854574298	0.738611090987844	0.93406400924634
Merged-chr3-84820856-2	chr3	84820356	84821356	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	ORR1D1|LTR|ERVL-MaLR	5279.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.41272378600336	4.14448238763917	4.29142242153104	4.23586375520137	4.44926699407181	4.44558313212914	0.247353891087285	0.58806904937562	0.876188269456179
Merged-chr7-122470656-3	chr7	122470120	122471120	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	MER5A1|DNA|hAT-Charlie	181495.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.10472015925725	3.10689827124572	3.23529465749992	3.11440545349307	2.85139018046489	3.19533231107347	-0.411239289622768	0.541540581191199	0.856856498945272
Merged-chr2-120134926-4	chr2	120134411	120135411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	19664.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.63046966579734	6.46204563525907	6.29436582208616	6.38208743612983	6.4716749500772	6.18487040556544	-0.190186793230632	0.502328897446509	0.836446283881744
Merged-chr9-20997650-2	chr9	20997150	20998150	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5087.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	6.81736436200374	7.04069086891038	6.71561739733517	6.92131327094946	7.39365562640674	6.58147466225262	0.236135868316707	0.447978785129785	0.806966980279683
Merged-chr5-139381446-3	chr5	139380947	139381947	+	906.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	808.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	8.41634542384794	8.66831398490177	8.0223402590538	8.07309999139736	8.44882836011045	7.98482123858285	-0.29517714128898	0.272750582579689	0.669951714189667
Merged-chr4-149793832-3	chr4	149793316	149794316	+	997.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19549.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.21760183157543	4.27790342125333	4.29946849041833	5.53487836643836	5.07311475428616	5.61395682179129	2.65578107546113	1.7829448498273e-09	1.87554077199027e-07
Merged-chr12-36042548-4	chr12	36042048	36043048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025359)	promoter-TSS (NM_025359)	-70.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	6.78246719933895	6.84136174866665	6.50552984249762	5.36768136466967	5.23631386326731	5.36907270716237	-2.46946869935078	1.11956435665146e-15	3.48901539281854e-13
Merged-chr1-75192070-4	chr1	75191570	75192570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026187)	promoter-TSS (NM_026187)	-60.0	NR_109938	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	7.5883465101972	7.77465950087543	7.56751977454513	7.6309184219498	7.98319070734469	7.63391925020472	0.170005474792363	0.479725778197483	0.824374187898974
Merged-chr9-78109107-4	chr9	78108582	78109582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	-17.0	NM_001081490	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	7.24518021709395	7.35249481203707	7.45773963403162	7.23020250538298	7.59263079767259	7.50479270551698	0.152305855732437	0.531776813691536	0.851792887243639
Merged-chr2-60123659-4	chr2	60123172	60124172	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	2068.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.79198588660858	5.81251295415294	5.1586052378564	5.91172967944457	5.99261544685631	5.59996419101455	0.390411264768026	0.291858132735533	0.689235268138963
Merged-chr10-81433061-4	chr10	81432552	81433552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	6.89173524771755	6.9895303399471	6.44395922793255	6.95600613807321	7.3709970231592	6.5438129242111	0.320826154061497	0.32801666934087	0.720205056403281
Merged-chr2-154790900-4	chr2	154790375	154791375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139511)	promoter-TSS (NM_001139511)	-235.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	7.1516725839855	6.91025683476545	6.95419000972672	7.13785109517253	6.96388588274409	6.82152660788629	-0.0409401244368081	0.872445446833621	0.970261003150518
Merged-chr6-99188639-3	chr6	99188133	99189133	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	77882.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.78006459446908	3.55576342015173	3.56406151311042	3.49874465075624	3.16135088897795	3.16181109044946	-1.35614550479251	0.032928514308774	0.22112144448426
Merged-chr11-33932075-4	chr11	33931590	33932590	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190886, intron 1 of 7)	intron (NM_001190886, intron 1 of 7)	-30923.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	4.32652655110895	4.29259900227226	4.28350864121096	4.11302852013126	4.04509586117809	4.07112539979566	-0.633112396756837	0.172276991362568	0.550849140713641
Merged-chr4-124705284-4	chr4	124704724	124705724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	4525.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	6.11672293102937	5.96097612423106	6.4000216658048	6.09854912968773	6.24869590659247	6.45919655985002	0.185404922317012	0.542274387321236	0.857067349203709
Merged-chr1-37531809-4	chr1	37531327	37532327	+	653.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 2 of 15)	L1MB8|LINE|L1	4577.0	NM_001290801	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	3.17349945111645	3.12002724866858	3.16522284798918	3.19517134799347	3.21419837971271	3.0575751826821	0.0410519315559557	0.948782047911377	0.988169196639905
Merged-chr4-99185903-2	chr4	99185405	99186405	+	739.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8029.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.4750676127197	6.94708968457893	6.26940081092171	6.96039733162101	7.30792381447055	6.88815191450011	0.714478651015539	0.0220613377319094	0.172348116608461
Merged-chr10-79856646-2	chr10	79856146	79857146	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-1675.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	6.64436451229074	6.59251702341219	7.27399767039966	6.87480257054536	7.1753179150802	7.33138306746371	0.414760255814698	0.179833074615973	0.561345475440548
Merged-chr6-124273395-4	chr6	124272889	124273889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31262.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	6.09667288981027	6.14457016546514	6.1583461523717	5.88270084275549	6.37286846551183	6.17674541395172	0.0600805789798147	0.843149564404071	0.96330726515818
Merged-chr3-9002725-4	chr3	9002231	9003231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1473.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.63368463115051	7.01453543511932	6.58029151410268	6.78548316176959	7.03593094699801	6.63971084713048	0.115162374720929	0.687440610595482	0.917146819342952
Merged-chr11-4096768-4	chr11	4096260	4097260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144520)	TTS (NM_144520)	-1329.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	6.22444805743263	6.45236485927274	6.3946551804239	6.2138598226644	6.37835948099391	6.30125316095195	-0.0947512893731912	0.73234486716284	0.931723932448277
Merged-chr11-17953489-3	chr11	17952989	17953989	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	386.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	5.93092145429124	6.41551462332401	6.48535290719792	6.15323532663465	6.05050734001563	6.03598277328291	-0.359258991792484	0.250785625350999	0.648153521953385
Merged-chr2-30391571-1	chr2	30391071	30392071	+	583.0	f1_c57bl6.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	-683.0	NM_020329	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	3.30152189063645	2.93563511644727	3.37695936062007	3.10646447246963	2.97810876059104	3.54780606307559	0.0530573339724193	0.940291610709959	0.986792088790777
Merged-chr18-23811009-2	chr18	23810509	23811509	+	906.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	7039.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.18804604923071	5.45171092239603	5.47700893626711	5.7736145251866	5.75957266133477	5.5690280215995	0.634587365784402	0.0567221180306684	0.307034478083259
Merged-chr11-62005083-4	chr11	62004593	62005593	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48330.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	6.7458079591301	6.90572312386194	6.96355205562236	6.30543798504494	6.36968645884456	6.50713547174179	-0.762888213488657	0.00361538616053362	0.0483026736746437
Merged-chr9-78527515-4	chr9	78527001	78528001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45777.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.21938722620684	8.37814700785144	7.95800378055431	8.24285445721292	8.52474409254727	7.93327199688936	0.0877959022598975	0.733720122372904	0.9322174913659
Merged-chr9-109046449-4	chr9	109045940	109046940	+	832.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357932, intron 2 of 5)	(CCTG)n|Simple_repeat|Simple_repeat	-4656.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	3.00959711857746	2.92924627955656	3.02055341812699	2.92932568059531	2.81667495276288	3.14908006032324	-0.0987797700489631	0.886059531799825	0.973677235958237
Merged-chr13-101850278-4	chr13	101849786	101850786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-82069.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.12557692979598	5.10736130265594	5.04967330177257	5.27873364809449	5.50269754707599	5.31653859574128	0.564819025955083	0.107856821896912	0.438671801643296
Merged-chr12-99999659-4	chr12	99999144	100000144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1C1|LTR|ERVL-MaLR	35145.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.76301428126242	5.23810949670818	5.32892473316241	5.44429164155841	4.74553014686153	5.01442936887413	-0.733222017325551	0.0814739448878523	0.377528763503281
Merged-chr14-31608947-4	chr14	31608434	31609434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31551.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.89457332521871	5.94831765854984	5.88249144739356	6.23063187635431	6.34780212649408	6.2159489258174	0.61452443857567	0.0303873370072319	0.210618037292608
Merged-chr9-77825485-3	chr9	77824982	77825982	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70947.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.6564692821655	5.68896660428625	5.51036884549924	6.31865268407826	6.09458631363624	6.197535188525	1.0107342805696	0.000878600592886642	0.0162966112645813
Merged-chr1-191286648-2	chr1	191286148	191287148	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31470.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	2.6444033630009	2.425454807767	2.60480328054408	2.43841733803412	2.51502348562705	2.28611063485243	-0.857933838692639	0.3144837311856	1
Merged-chr9-35268494-3	chr9	35267993	35268993	+	949.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	612.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	5.78464303372829	5.68606870522405	5.58971732247155	5.03198676124741	5.2402372406355	4.96276086259971	-1.16552923986345	0.000965096040612116	0.0175259081945118
Merged-chr7-24884508-4	chr7	24883998	24884998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-94.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	6.97627377783817	7.37699944432709	7.63102844898201	7.38836191693053	7.35590414050843	7.61720028515785	0.154819646756024	0.57251186803393	0.869840399318717
Merged-chr12-55020217-2	chr12	55019723	55020723	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	-33887.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	5.03946479792306	5.08684276037898	5.31888534288536	5.63875466578755	5.52914517399716	5.85487103201038	1.03102048302775	0.00304856654265106	0.0425969983007405
Merged-chr5-3647197-4	chr5	3646692	3647692	+	861.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026033, intron 1 of 4)	intron (NM_026033, intron 1 of 4)	744.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	5.33203783062259	5.11593766794643	5.72176309312551	5.8077157961545	5.47737542367358	5.80708575355779	0.565678135550452	0.123126498449125	0.469420833125078
Merged-chr3-96241623-2	chr3	96241123	96242123	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1249.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	3.15161651751049	3.38144257282794	3.11938232277107	3.09595922588529	3.47068071102003	3.25242258116039	0.246123038886194	0.709260719165149	0.923935571500538
Merged-chr3-144561755-4	chr3	144561265	144562265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	8451.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	4.75750195123172	4.6594890763198	4.49995774230894	4.46223614762203	4.81849846763507	4.69284744673053	0.0517751924890435	0.903077225252142	0.977740257615482
Merged-chr15-78257392-4	chr15	78256899	78257899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	RSINE1|SINE|B4	12588.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	7.3512374268496	7.17941692167736	7.30932918715632	7.27741478599454	7.43644042604418	7.2397516441558	0.0680590784903961	0.772056087420735	0.943680976839558
Merged-chr11-58331587-2	chr11	58331080	58332080	+	613.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161338, exon 2 of 7)	5' UTR (NM_001161338, exon 2 of 7)	790.0	NM_001308168	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	3.96720165746906	4.31733187691857	4.20197693279931	4.33387275137558	3.92726529662718	4.4402972509077	0.198673388237906	0.696197048726741	0.919393791747947
Merged-chr2-128731614-4	chr2	128731093	128732093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	32678.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.23130946268971	6.29549281302056	5.79676408168999	6.27259392247903	6.4286631906957	6.11138315600492	0.243300406237727	0.434828381507983	0.798660466628143
Merged-chr2-71344091-4	chr2	71343604	71344604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	23450.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.38192636284817	5.49925359718168	5.01616574220944	5.5704339938808	5.27075395297824	5.51300176219815	0.240301921145473	0.513355368841752	0.842549813251827
Merged-chr10-99198069-4	chr10	99197573	99198573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027740)	TTS (NM_027740)	-65158.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.34358010336222	4.97054893649398	4.75650161198504	4.65111430069819	5.18681658498591	4.65161810717526	-0.394725954120672	0.382098108739307	0.763773979195721
Merged-chr3-95672663-4	chr3	95672161	95673161	+	940.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13940.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.60605598164707	6.41587554655099	6.57603140763496	6.75877804940828	6.9890352227071	6.74931724089394	0.494375688106105	0.059810325018262	0.31659911099829
Merged-chr19-43513101-3	chr19	43512616	43513616	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 2 of 8)	B1_Mus1|SINE|Alu	11489.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.49777139805052	7.624570697564	7.37776803402409	7.46649345703766	7.89066506277622	7.71093681803514	0.285584483337627	0.243343442328196	0.640502592040103
Merged-chr12-5213885-4	chr12	5213395	5214395	+	896.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	161787.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	2.67759795899345	2.82258856257698	2.75242480786784	2.78939454771468	2.81326696900532	2.94515192596947	0.488558889695182	0.49616089352898	0.832887171202415
Merged-chr6-116037434-3	chr6	116036943	116037943	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 4 of 5)	intron (NM_177412, intron 4 of 5)	-42438.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.09786728666064	3.3127127589152	3.29588123530222	3.25353127707093	2.84282167602853	3.25614291133449	-0.469345879214822	0.495490748782843	0.832500902975543
Merged-chr13-34254254-2	chr13	34253754	34254754	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90928.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	8.16923554244538	8.3196711246437	8.12975324969806	8.0000027609069	8.39570437252845	7.93371444172178	-0.106641909400228	0.655630515492792	0.90429384180742
Merged-chr13-100642645-4	chr13	100642143	100643143	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283011, intron 4 of 17)	B2_Mm2|SINE|B2	8418.0	NM_001044371	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	4.33873434021778	4.45550694158356	4.46488170333277	4.53586289063254	4.8717545597435	4.48909725451998	0.583502959217938	0.182568134343154	0.565398543501872
Merged-chr18-53899355-4	chr18	53898849	53899849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 2 of 12)	intron (NM_152809, intron 2 of 12)	37236.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	5.33870118624893	5.39646065360601	5.11288671495662	5.58388713724133	5.23361018960928	5.37662282422592	0.209030168523659	0.558714472878466	0.864760302441804
Merged-chr16-87701968-2	chr16	87701468	87702468	+	858.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	(TCTG)n|Simple_repeat|Simple_repeat	3014.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.17926161317621	3.06493494697474	3.38994286895453	3.11666641775182	2.85732656630747	3.35598469215827	-0.401078447866786	0.562672325453742	0.865755360453189
Merged-chr17-81706777-4	chr17	81706277	81707277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	31610.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	7.52331336506841	7.54180848035384	7.37926823052214	7.47100752574794	7.70896275233339	7.19936124859211	0.00174294033785474	0.994479802871463	0.998946345565713
Merged-chr3-96263302-4	chr3	96262748	96263748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	69.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	8.42182246188833	8.57588093209415	8.03788291065188	8.32489596596343	8.64719128734207	8.19467675674008	0.0530709449427155	0.835402958367534	0.961706261746066
Merged-chr3-88467285-4	chr3	88466767	88467767	+	813.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-6085.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	2.61850674470795	2.29398630269328	2.54400005391964	2.76343092116747	2.3692630024629	2.7445740620006	0.814394734373324	0.339878008211525	1
Merged-chr11-87472226-2	chr11	87471726	87472726	+	723.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	L1Md_A|LINE|L1	44635.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.98622401840467	4.29803176747367	4.39184669657506	4.10231915801536	4.28641271353257	4.28896931364211	-0.005057838987217	0.991610811884572	0.99832587896332
Merged-chr2-160211305-2	chr2	160210805	160211805	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116189.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	7.67706805298691	7.59514438834881	7.74434360774704	7.75643493929759	7.72185038731271	7.32074914161899	-0.0696301887546057	0.773714105315836	0.944173663294033
Merged-chr5-22855258-3	chr5	22854738	22855738	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-108354.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.54906718982534	3.78515153779498	3.68548237144299	5.00496405521485	5.15484265551347	4.64233952731644	3.73676622432146	8.70407004198671e-11	1.17382213947104e-08
Merged-chr5-130172941-2	chr5	130172441	130173441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	B1_Mur4|SINE|Alu	1122.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	6.66584201412464	6.49614420787555	6.45125567791383	6.53842925937361	6.22574623396993	6.39864574099774	-0.252266670651013	0.362104091448367	0.747675323428227
Merged-chr13-54207249-4	chr13	54206740	54207740	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	15107.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	3.34342139444212	3.10764063355624	3.34927554247477	3.52173029249095	3.46420844961976	3.53010133839495	0.918740704135999	0.129860859504041	0.482060341820603
Merged-chr10-60279491-2	chr10	60278991	60279991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	1863.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.95100514852036	7.08091774755134	7.01932557185209	7.61892127504581	7.43069218271792	6.6859641453062	0.443948497342249	0.151286692539675	0.518599615535575
Merged-chr15-78608990-4	chr15	78608485	78609485	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 6 of 12)	MIRb|SINE|MIR	11938.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.14945055558461	5.37850135856252	5.51886870857552	5.70341194930343	5.62173232631912	5.3409858117958	0.428077718679441	0.221201007756884	0.615719180190507
Merged-chr1-87623021-3	chr1	87622510	87623510	+	919.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	2698.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.73096317219054	6.65138720183617	7.13144679000909	6.78878784485765	7.1494135194843	7.09262722483571	0.270316832840258	0.335173029789406	0.72537134474399
Merged-chr10-33951296-4	chr10	33950848	33951848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-89.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	7.69667490716832	7.92419106864763	7.66361539487062	7.6338450730661	7.86088182717444	7.78186749957048	-0.0101596110040698	0.964620893655076	0.991519129389361
Merged-chr9-44723153-4	chr9	44722680	44723680	+	948.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	12018.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	2.90766366509416	2.93442447200189	3.04760897765258	2.53731591748337	2.56415980665684	2.82982263151231	-1.75918209860719	0.0245403711673627	0.184742169917119
Merged-chr18-38339007-4	chr18	38338540	38339540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-47.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	8.36869957818048	8.92929188085256	8.21632632927966	8.36659641150604	8.57231206287601	7.95144547714349	-0.306755662726933	0.290039031217202	0.687724248806987
Merged-chr10-98972555-4	chr10	98972057	98973057	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	57405.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.21917510479918	4.15568482139525	4.2944976522426	4.08461827546663	4.12523093920923	3.9883381237147	-0.419575012094368	0.376055216143263	0.758951282467405
Merged-chr11-97051341-2	chr11	97050841	97051841	+	971.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310509, intron 1 of 22)	intron (NM_001310509, intron 1 of 22)	521.0	NM_001081434	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	4.82740350790888	4.4720114367202	4.7100682439078	4.69330411169836	4.49930910243183	4.73742557215561	-0.0874026219851637	0.836748166562551	0.962001762335242
Merged-chr10-21996906-5	chr10	21996472	21997472	+	959.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011361, intron 7 of 11)	intron (NM_011361, intron 7 of 11)	2306.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.44803036151829	5.1390349157098	5.20856452950052	5.22246925443044	5.42705405561336	5.51487772309752	0.228306908891955	0.521217154405865	0.84693755135567
Merged-chr11-120041938-4	chr11	120041467	120042467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-186.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	8.69771906078772	8.6268366959472	8.39808208668238	8.40423493330695	8.62743066994837	8.00412100635586	-0.283208579012106	0.259290070088533	0.656873440460546
Merged-chr10-93257442-3	chr10	93256944	93257944	+	874.5166630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	53715.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.60962647012809	5.32861518675796	5.63508890622305	5.62681304056939	5.1901684907203	5.14820046064282	-0.355156904590965	0.334276424134806	0.724882663975632
Merged-chr4-16198927-4	chr4	16198423	16199423	+	912.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	34813.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	2.75287757222112	2.6780867525707	2.73173670623935	3.35281754494332	2.6945294927026	2.9383985287321	1.4795369499356	0.0564257866519823	0.306207321185557
Merged-chr2-172441384-4	chr2	172440874	172441874	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	796.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	7.25409579850032	7.58857243637967	7.05268067952394	6.72726301777131	6.76519029850263	6.65580372905431	-0.922867105885434	0.000588297387862546	0.0119596992546462
Merged-chr2-59240802-3	chr2	59240312	59241312	+	946.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79962.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.99706441495044	6.55199139665423	6.45293409217008	6.75705495740911	6.85799050021379	5.99005503967586	-0.147386150700917	0.675997198442554	0.912421384593547
Merged-chr6-108606400-2	chr6	108605900	108606900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 3 of 6)	MIR|SINE|MIR	16767.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.97013745169439	3.02144699720955	3.0917173345062	3.14116893092764	3.42763136815572	3.16459205949863	1.01001236963606	0.125170000336945	0.473461569668643
Merged-chr2-4616454-4	chr2	4615941	4616941	+	795.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	35694.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	5.03731619520967	5.4300156063964	5.23258660191111	5.45729342382802	5.25539810826399	5.09037075375203	0.0702336260751189	0.850148080765554	0.964823340142195
Merged-chr11-114903302-6	chr11	114902825	114903825	+	968.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13284.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.90522134610422	5.81809913972659	6.06098491936236	5.79983211439911	5.46815277176572	5.94726225014013	-0.332739559267494	0.309417728519258	0.705003874352637
Merged-chr1-151620827-4	chr1	151620319	151621319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	49446.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.47804758875598	6.10479441946636	6.38561801704373	6.08761213913363	6.19558998485739	6.07957248043552	-0.34110130187397	0.243654479204031	0.64086208327192
Merged-chr6-123263382-4	chr6	123262879	123263879	+	748.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	1272.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	4.00306950952603	4.19881288299371	3.9763601321364	3.96196255207583	3.87877231620984	4.04551986245756	-0.328326043594067	0.508445295300726	0.839818423824339
Merged-chr12-8502616-4	chr12	8502101	8503101	+	924.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	6.77804464919479	7.51194971242408	7.02288922900242	6.80265757733182	7.4276463449634	7.08096932461707	-0.0180812019285625	0.95502140974566	0.989683851514547
Merged-chr14-54749512-4	chr14	54749027	54750027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	32359.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.60251572499571	5.5313849703042	5.96050428068048	5.69124088867537	5.75449754749589	5.45303760558122	-0.0937272580722189	0.782346131215789	0.946484752418558
Merged-chr19-44409669-2	chr19	44409169	44410169	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1960.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.39723890116156	3.08064928201636	3.37265181846289	3.48921250585225	3.45298729263203	3.27138187304194	0.479095136936412	0.445983169347149	0.805513451373278
Merged-chr5-24842088-3	chr5	24841608	24842608	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	CpG	253.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	8.52021462374324	8.76956162659872	8.42166337534585	8.51301520785452	8.58308656909748	8.43105407296505	-0.0976917370094094	0.650961614231557	0.902735752871093
Merged-chr13-51323284-4	chr13	51322781	51323781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-85337.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.41158557042557	5.43975739006445	5.90278528415879	5.58687552416106	5.57170798279826	5.62425612348163	0.00554301288613868	0.987144560133179	0.997161899445921
Merged-chr11-98790535-2	chr11	98790035	98791035	+	732.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4981.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	3.38636629106584	3.47908940409979	3.69445569295225	3.82833537770054	3.64802373032895	3.71322645995557	0.74145649219049	0.18862732688608	0.574222837446979
Merged-chr1-189007120-2	chr1	189006620	189007620	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153196, intron 1 of 17)	intron (NR_153196, intron 1 of 17)	720.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	4.44465756765709	4.59745450315085	4.37320594011154	4.84668237889624	4.72978092794707	4.57673083259296	0.588624992414437	0.164610442379565	0.539208350811795
Merged-chr7-126376761-2	chr7	126376261	126377261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045537, intron 1 of 12)	intron (NR_045537, intron 1 of 12)	1173.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	6.26204586682658	6.27406935485399	6.13269693081395	6.08571518994514	5.76477934485966	5.9671182502091	-0.496216513053518	0.0929616816299859	0.406223489865496
Merged-chr2-25053885-2	chr2	25053385	25054385	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	-494.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	3.46870985877325	3.59492585088623	3.78279507455627	3.72071271555736	3.28828599887128	3.80352981770498	-0.000566204176112001	0.999253529977285	0.999910586345539
Merged-chr3-108797968-4	chr3	108797454	108798454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 16 of 18)	intron (NM_011504, intron 16 of 18)	42548.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	5.5439714404203	5.60302512493477	5.67290537971635	5.84910939379565	5.83754831082477	5.70834822383088	0.369074677839805	0.233388545270303	0.629763382972328
Merged-chr11-51920826-2	chr11	51920326	51921326	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-46805.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.57585226399204	7.77231575014254	7.63969054460436	7.45077267979998	7.64442570055722	7.54431327169891	-0.167665911066276	0.459082854028799	0.813375481603532
Merged-chr17-48307224-2	chr17	48306724	48307724	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360121, intron 2 of 4)	intron (NM_001360121, intron 2 of 4)	7186.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	2.87505869105441	2.88243448011542	2.6540202787386	3.02713840459037	2.68996954940659	2.9222407474159	0.361018214349346	0.629808424330787	0.894377678440432
Merged-chr4-3981604-4	chr4	3981110	3982110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38053.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	3.61832884431566	3.42857805745517	3.44718464916087	3.3698194863144	3.14925897198542	3.62314098135354	-0.43847745280579	0.48137390540175	0.825057383179199
Merged-chr5-64378401-2	chr5	64377895	64378895	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	89547.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	7.40970302188339	7.48584156649378	7.46774805775668	7.73605056014252	7.94955117905103	7.76727765746585	0.540633342246226	0.0152137072282644	0.13402881429851
Merged-chr9-61966273-1	chr9	61965773	61966773	+	542.0	f1_balb.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-19474.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.48757812757503	4.21458981683116	4.50401028037964	4.46560088322266	4.27023032491106	4.79392213547768	0.280916701977186	0.546762224253025	0.85898091530532
Merged-chr5-103760936-4	chr5	103760445	103761445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	6372.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.03671797702932	5.89139131816515	5.8310202952296	6.03176376499566	5.89887089249652	5.8418452556843	0.0021598047543235	0.994252161998157	0.998918571480046
Merged-chr9-111064323-2	chr9	111063839	111064839	+	755.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6821.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.59318987325819	3.58637018948959	3.76212339068675	3.42160377290509	2.995492352605	3.04163317699974	-1.93000052323583	0.00503999521806239	0.0615560823841689
Merged-chr15-53413631-2	chr15	53413131	53414131	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3_Mus|LINE|L1	-67448.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.04083994298478	3.84614474645273	4.19672665838201	3.95127950286752	3.63961800724611	4.30466946051994	-0.137096351921187	0.804530432796753	0.953651704501661
Merged-chr12-119357479-4	chr12	119356978	119357978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85932.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	5.39882658587047	5.5650395022546	5.5052823308595	5.70595471061678	5.66648747070108	5.70547336869066	0.37364710488231	0.240434683997043	0.637521740454717
Merged-chr3-109027300-3	chr3	109026807	109027807	+	986.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163567, exon 1 of 11)	exon (NM_001163567, exon 1 of 11)	300.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	6.55627669117243	6.10558833259832	6.49442639937697	6.700678524934	6.63511428508236	6.65487126889493	0.428789820002005	0.129963774827396	0.482173945088832
Merged-chr17-28180919-4	chr17	28180379	28181379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3461.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	5.54241079095705	5.50999582861679	5.47909781355221	5.29043414671053	5.16980735006727	5.26680916818573	-0.537548826700978	0.10847787329937	0.440046162319325
Merged-chr7-126199866-4	chr7	126199381	126200381	+	938.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	620.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	7.91246053357707	8.20294105853686	7.56795143651596	7.77500791488959	8.05193756744625	7.57353791905969	-0.151106089421376	0.581113285380728	0.873228285171611
Merged-chr7-131371165-4	chr7	131370673	131371673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039534)	promoter-TSS (NM_001039534)	27.0	NM_001039534	214580.0	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	5.29359657866378	5.66900260469937	5.64319092001251	5.46536791461651	5.37432143044136	5.4858226734746	-0.19996500599344	0.559257984500386	0.864901733108576
Merged-chr6-33540221-3	chr6	33539740	33540740	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	291112.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.72552021278108	5.04216919232769	5.14738618195725	5.23991788532889	5.28161584464505	4.80922103921427	0.338865374175074	0.401903090914105	0.777823507457637
Merged-chr2-122580640-3	chr2	122580145	122581145	+	905.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30632.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	5.51869118011504	5.60672113424916	5.32686607441637	5.0186768018009	4.9167801530056	5.12762726985247	-0.97929508474372	0.00580314019118091	0.0680766514912987
Merged-chr11-118244747-2	chr11	118244247	118245247	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	B3|SINE|B2	3845.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.10234055043276	5.4857924927474	4.96371638603957	5.41940193158492	5.46804725377326	5.24833034135044	0.338287678982138	0.369625214970106	0.754243198058528
Merged-chr9-124081607-2	chr9	124081107	124082107	+	639.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEy-int|LTR|ERVK	-20576.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	5.40279057083299	5.39473232705209	5.86815011879555	5.3421352130651	5.57989987159585	5.81646230967119	0.0478038077921554	0.895380222465427	0.975665889379756
Merged-chr6-136831880-4	chr6	136831380	136832380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001039558, exon 2 of 2)	5' UTR (NM_001039558, exon 2 of 2)	3037.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	4.96130728546841	5.09581110041729	5.50000352234226	5.73613640860028	5.52398027430754	5.35741382669704	0.707757281654	0.0576415729880926	0.310087853789179
Merged-chr2-46315472-4	chr2	46314990	46315990	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	618885.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.16356993172711	3.80034343114475	3.96369383844384	4.01703303840582	4.08064205758982	3.93235706431636	0.0880842902272915	0.862755217705894	0.96809238390547
Merged-chr7-97123561-4	chr7	97123068	97124068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	41817.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.70866936079915	6.7953468084784	6.71789344793175	7.05196324294235	7.19992304031587	7.01096186295457	0.545061954819314	0.0262590279496891	0.192405882144922
Merged-chr14-30607908-4	chr14	30607405	30608405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 3 of 17)	intron (NM_011103, intron 3 of 17)	2405.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.44474947671407	4.3957247213048	4.30167877675826	4.71355233944482	4.59218807624476	4.46243852714214	0.525798465914805	0.222630160487632	0.617600314643732
Merged-chr7-31112228-3	chr7	31111741	31112741	+	923.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	-1244.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	5.44964489941919	5.29766072065883	5.10430210403419	5.62890007043521	5.03497555742858	5.46041164769371	0.184151562242466	0.632460818512971	0.895540879841635
Merged-chr3-115815660-4	chr3	115815173	115816173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72386.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	6.85441181144907	7.21416033553583	6.62735854776064	6.01790668831091	6.20006131925879	5.49031746240644	-1.5783759998259	7.78347680054837e-06	0.000321732507511192
Merged-chr12-17679757-4	chr12	17679260	17680260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11049.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.57949114534254	7.38153386800813	7.47693526567153	7.80558644422731	7.85726871568511	7.52361745429931	0.380490957235507	0.105021814809323	0.432349849923518
Merged-chr19-23057041-4	chr19	23056538	23057538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84188.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	5.81282195468607	6.00484805987114	6.15893230952683	6.312000782297	6.23265687020705	6.31818545833415	0.50023557171497	0.08476879942492	0.385560416669331
Merged-chr17-62574742-4	chr17	62574219	62575219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	306598.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	5.29820705264579	5.44221770356433	5.49695947497287	5.64498819615412	5.48931836582274	5.41181876239598	0.214660251760391	0.520141092439954	0.846203027015674
Merged-chr2-71044308-3	chr2	71043812	71044812	+	680.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	11294.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.90336260077962	5.73845632928661	5.61288924555174	6.125856344719	6.18435665558543	5.99082636884514	0.600563915125935	0.0481411791850743	0.278156463969979
Merged-chr5-112267088-2	chr5	112266588	112267588	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-9603.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	4.32338074285877	4.39605538322988	4.59826795788112	4.3251579180084	4.60781028378897	4.28102598994567	-0.0315355985542034	0.944744989852942	0.98786315338489
Merged-chr11-83662457-4	chr11	83661983	83662983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-101.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	7.89984821902768	8.07372574112133	7.66493716499149	7.38028105249445	7.68797558645875	7.38447697434297	-0.572310222483647	0.0211947277416591	0.167785724772578
Merged-chr4-117181707-2	chr4	117181207	117182207	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134471, intron 1 of 19)	intron (NM_134471, intron 1 of 19)	917.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	2.37517192240842	2.34128921411274	2.43352858885783	2.57127346021059	2.27072836832151	2.5716869923576	0.575124908980432	0.488013894078942	1
Merged-chr17-29491904-4	chr17	29491385	29492385	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008842, exon 4 of 6)	exon (NM_008842, exon 4 of 6)	840.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	7.24174956025279	7.05306178494443	7.01399590538824	7.83871430524628	7.80673576985666	7.84273423569465	1.05082456704479	4.31910345552709e-06	0.000194893687813177
Merged-chr8-83744244-1	chr8	83743744	83744744	+	859.0	f1_balb.idr	Intergenic	Intergenic	-2933.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.40679155002917	3.16132258592274	3.15180630372753	3.44494144476818	3.26801090088782	3.2853180230387	0.34208933923864	0.587125812602503	0.875769926947203
Merged-chr8-24417404-2	chr8	24416904	24417904	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21542.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.47430034165373	3.58008823166362	3.31171686927735	3.59665837288536	3.36572928264964	3.60905527569307	0.208493768192065	0.726158193399495	0.929743505822386
Merged-chr18-32187428-4	chr18	32186921	32187921	+	788.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	24332.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	3.36309261533622	3.52246194096044	3.39591643226758	3.23380572104562	3.10198373112221	3.62236368602947	-0.389428705520215	0.543972505183642	0.857551302506722
Merged-chr8-119824252-4	chr8	119823754	119824754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	16325.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	5.70431733708036	5.73015037680038	5.47277976020696	5.63696587062844	5.62210594194762	5.34492458622442	-0.182798170178524	0.582772290628001	0.873826743013405
Merged-chr19-8897253-2	chr19	8896753	8897753	+	718.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-804.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	4.41359487247455	4.52986626295299	4.71300569807251	4.74671024050221	4.6764402221173	4.88686120807569	0.516399525142256	0.213264846130278	0.60609813910814
Merged-chr10-86706313-4	chr10	86705765	86706765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	454.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	8.60267444212133	9.01725493185013	8.49862017694345	8.6601986089226	9.02147171928627	8.44504244554849	0.00896653136066163	0.97279608098653	0.993881982649774
Merged-chr13-18718530-1	chr13	18718030	18719030	+	766.0	f1_balb.idr	intron (NM_172120, intron 1 of 28)	intron (NM_172120, intron 1 of 28)	1238.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	3.42548098225232	3.36691158934544	3.61809181938131	3.50336547567921	3.36808699218415	3.47931668309163	-0.0728794395829056	0.900949694690196	0.977039928959315
Merged-chr9-35114723-4	chr9	35114232	35115232	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1996.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.01047082205184	6.01522103856153	5.99293050871799	6.28764581100442	6.18738839306532	6.50646730141292	0.53587493470549	0.0626418806746264	0.325524956730846
Merged-chr11-50827786-4	chr11	50827283	50828283	+	858.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013922)	promoter-TSS (NM_013922)	-52.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	4.00325574029537	4.0719369996814	4.02489245358391	3.99616667158148	3.97329280118558	3.99645707488864	-0.138979922272644	0.774773410299931	0.944493464665915
Merged-chr11-52232799-2	chr11	52232299	52233299	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011543, intron 1 of 5)	intron (NM_011543, intron 1 of 5)	804.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	6.96514681328629	7.46452472622005	7.05538639189467	6.84556477334482	7.10638443103702	7.07413875282775	-0.260223237265554	0.341272018324064	0.730768298120433
Merged-chr3-90220374-3	chr3	90219850	90220850	+	681.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026677)	promoter-TSS (NM_026677)	-434.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	5.08290575054819	5.45796929672571	5.32126453733166	5.03894136723254	5.0832435235649	5.47020858340188	-0.195567282192898	0.60555241703582	0.883581756351046
Merged-chr9-114729422-2	chr9	114728922	114729922	+	646.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	3.46632875295215	3.46441310010624	4.00090961554846	3.6476895240185	3.41605355685815	3.64765621664302	-0.305027579081813	0.61417886832264	0.887421941740887
Merged-chr11-98863579-4	chr11	98863089	98864089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-9.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	6.38215349573809	5.82980993099033	6.36838282734624	6.68202767529328	6.23065479735489	6.61713730211611	0.501312079619822	0.123758436576911	0.470859258833634
Merged-chr3-105710207-3	chr3	105709687	105710687	+	860.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4729.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	4.6386601174056	4.21854168439916	4.17172433765275	3.82618180288658	4.0225048016309	4.04573740963026	-1.12077917037199	0.0274185550160593	0.197373745633382
Merged-chr17-43037939-2	chr17	43037439	43038439	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178589, exon 2 of 6)	exon (NM_178589, exon 2 of 6)	21384.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.28230993692581	5.4366717579466	5.54978204276268	5.12217748604047	5.30319239736654	5.1596219421144	-0.432833565296741	0.217668481847834	0.611656200779633
Merged-chr12-73329159-2	chr12	73328659	73329659	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	42311.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.71583520728619	2.82764705989549	3.09730151496272	2.7481927575962	2.81815647630524	2.62994838920226	-0.741861626431394	0.328380930223721	0.720562985671201
Merged-chr2-155385295-4	chr2	155384834	155385834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178111, exon 2 of 4)	5' UTR (NM_178111, exon 2 of 4)	3478.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	3.56952376343971	3.31706238490699	3.47571610010035	3.63973730996657	3.68771946527725	3.60206199453964	0.675796790402927	0.238004798908181	0.634577778375799
Merged-chr11-101086075-2	chr11	101085575	101086575	+	693.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305982, exon 9 of 10)	exon (NM_001305982, exon 9 of 10)	-1215.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	4.05185727580557	3.88555728246244	4.20560306722975	3.99894854951019	3.90096962592776	4.04889036296332	-0.199910196328993	0.688926981980065	0.917235946766438
Merged-chr7-4087720-4	chr7	4087223	4088223	+	926.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-24519.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	3.97839013774619	3.56211397606941	3.87195140798836	3.85122881780667	3.43582622587107	4.07906444121121	-0.017589552026446	0.976500085520171	0.994723308989508
Merged-chr9-86631317-4	chr9	86630808	86631808	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 6 of 13)	intron (NM_008615, intron 6 of 13)	55969.0	NM_001198933	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	4.09927117665963	3.6543287951392	3.69664424054042	3.67412728924475	3.57282682026867	3.48409256345529	-0.858639128832803	0.137445593219054	0.495475821877266
Merged-chr1-120534013-2	chr1	120533513	120534513	+	888.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28989.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.96743178644191	3.91736636766779	3.83322888428951	4.25018578427183	4.10404091470221	4.10673168897502	0.717641879816878	0.143600392614636	0.505892249381763
Merged-chr14-31401542-4	chr14	31401053	31402053	+	848.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16124.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.38302680333864	7.23555952106162	7.32879482736969	7.20907205683077	7.02370615676118	7.01998137057286	-0.342668298463817	0.148788885984145	0.514713316919423
Merged-chr19-29373786-2	chr19	29373286	29374286	+	572.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021893, exon 3 of 7)	exon (NM_021893, exon 3 of 7)	6348.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	2.69074002723929	2.37854586415154	2.65227516976012	2.72053479484374	2.47481573089123	2.72618448309584	0.350112007737336	0.663531580169088	1
Merged-chr13-47215592-4	chr13	47215099	47216099	+	867.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21596.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.44930229242741	6.6389841158853	6.81300812083946	6.43557214764048	6.35814586797054	6.37978868903775	-0.393044531294885	0.149610000636269	0.516095888766746
Merged-chr6-121245358-2	chr6	121244858	121245858	+	833.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-548.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	6.07546494732247	6.28203630333589	6.17047575725435	6.60104031905375	6.80842069875672	6.23149244965321	0.657228383065157	0.0283471130798599	0.201502136757209
Merged-chr12-79172686-4	chr12	79172194	79173194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016800)	promoter-TSS (NM_016800)	-236.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	8.70741683021888	8.75591698593025	8.5623816545281	8.50578559775887	8.61598463502937	8.14231462381619	-0.326319521874113	0.154924422651686	0.524214198690637
Merged-chr9-65532152-2	chr9	65531652	65532652	+	976.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	47935.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.5285834633094	3.15083959477648	3.34107353200502	3.82523868937203	3.3370010870546	3.52866205028908	0.836293003392302	0.189858297895415	0.575907966795463
Merged-chr5-20256241-2	chr5	20255706	20256706	+	655.75	f0_c57.idr|f1_balb.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	348688.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	5.47640665174584	5.46766061601466	5.08073865763562	5.24502161815663	5.06710818905633	5.3776479327537	-0.279211852337285	0.446851185646315	0.806122541261987
Merged-chr3-116128574-2	chr3	116128074	116129074	+	770.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011693, exon 2 of 9)	exon (NM_011693, exon 2 of 9)	1114.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.95258627828199	6.97864341872576	6.9442087824439	7.36225461739903	7.5960435478771	7.08552401843454	0.625321946851143	0.0150187495837808	0.132872587080455
Merged-chr17-67345979-3	chr17	67345479	67346479	+	876.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	B4|SINE|B4	8480.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.15659278914201	8.03869178452245	7.97629663534415	8.25045936191872	8.14098582604689	8.00951941916289	0.110771773005854	0.606718702777143	0.884254358240743
Merged-chr11-70222617-2	chr11	70222117	70223117	+	694.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1623.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	3.73544092360074	3.30101871684413	3.65586037004561	3.58616507721627	3.48938485445846	3.67445636775996	0.0188333308613501	0.974620957860508	0.994296985713596
Merged-chr15-99474275-2	chr15	99473774	99474774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	456.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	6.35313139023867	6.37399142621244	6.28356224826263	6.59766546758907	6.47329242138056	6.1955387963531	0.165413668325911	0.555249073765286	0.863191483122339
Merged-chr11-115690554-4	chr11	115690052	115691052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8982.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.15336066314762	7.10808792418648	6.97105216193151	7.33503393599637	7.59904950661131	6.95663488828398	0.377775751625308	0.166866838714105	0.54240433228749
Merged-chr9-70740185-4	chr9	70739675	70740675	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007399, exon 5 of 16)	exon (NM_007399, exon 5 of 16)	61193.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.02457165356115	3.99388198488522	4.21130331831433	3.89992177405143	4.08722129657483	4.27798488219728	0.0529443543858783	0.914830971391917	0.980938755430376
Merged-chr2-129129707-4	chr2	129129235	129130235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025395)	promoter-TSS (NM_025395)	35.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	7.40160522299263	7.67406868404935	7.37175789075783	7.13778916939895	7.32263063155877	7.03939163619324	-0.46970885551843	0.0591644638531905	0.314968439430344
Merged-chr12-84190307-3	chr12	84189830	84190830	+	895.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3685.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	2.78308773922476	2.74365937853653	2.95222146937245	3.17822169806138	2.85978718438889	2.84006926130679	0.704751806815164	0.327850242720572	0.720029640676046
Merged-chr2-91984738-4	chr2	91984282	91985282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011957, intron 10 of 11)	C-rich|Low_complexity|Low_complexity	-21219.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.16650469817086	5.9562547079133	6.16492595933004	6.37054206835106	6.27941755622454	6.26634317015405	0.35552456230888	0.207063647173375	0.597920729067479
Merged-chr9-75557783-1	chr9	75557283	75558283	+	583.0	f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	1874.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	3.83184527187532	3.6026284566427	3.28513263352402	3.54340967280184	3.70064965399653	3.75893179335301	0.237443792647246	0.697628765505146	0.920014174184201
Merged-chr2-73462928-4	chr2	73462456	73463456	+	928.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9067.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.63633752754579	5.41592945515698	4.97889628078493	5.82269107254094	5.35992360728479	5.52786887061398	0.377413784173405	0.332231869272673	0.72348467360483
Merged-chr11-74724234-7	chr11	74723773	74724773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037610)	promoter-TSS (NR_037610)	111.0	NM_013625	18472.0	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	8.72828070290782	8.83851000391017	8.46098585583675	8.56040745882739	8.42682387757251	8.23397113232952	-0.377903093465881	0.0952405563062288	0.411228073744418
Merged-chr17-35166905-3	chr17	35166398	35167398	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2021.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	4.206707081929	3.82894669269435	4.39692409236588	4.16985754020176	4.08261931354347	4.68493815281368	0.463966923632856	0.384495288063137	0.76560457378093
Merged-chr4-133157392-4	chr4	133156888	133157888	+	939.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	26755.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	7.15354962404566	6.85495860946813	7.09460604365846	7.46021811608836	7.63575188785265	7.39858171977682	0.698341370231545	0.0043675188842374	0.0556101777076703
Merged-chr17-27910359-4	chr17	27909847	27910847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	1041.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	7.87072707829701	8.05700037950578	7.83232783258016	7.94830564299345	8.3456519120421	8.03697400271098	0.284426798303516	0.226440998790791	0.62138719831753
Merged-chr14-101503753-3	chr14	101503267	101504267	+	928.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 3 of 18)	intron (NM_001081278, intron 3 of 18)	105424.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	2.92328837072256	2.86769547982681	2.64899100976431	2.70737922138425	2.53462587883053	2.84983118675558	-0.656586148507772	0.394403585648379	0.772340814634401
Merged-chr6-34620429-4	chr6	34619909	34620909	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	MLTR14|LTR|ERV1	21905.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	6.5564002332181	6.29921609280066	6.75370058823188	6.3735819786998	6.45430978287228	6.5976148414134	-0.107251754669425	0.706019352325334	0.922873857425637
Merged-chr10-128526744-4	chr10	128526230	128527230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-871.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	7.82601881850114	7.80142639614338	7.52085293880437	7.85935033499164	8.09764824297143	7.67641352073898	0.240384204392704	0.324460879802654	0.717544999689449
Merged-chr10-86772545-4	chr10	86772057	86773057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003910, intron 14 of 15)	intron (NM_001003910, intron 14 of 15)	-6448.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.20591301681956	5.40992698355431	5.25542141892258	4.95198934938198	4.89838258488835	5.01759488770623	-0.721228776611344	0.0462913546311948	0.272193557780543
Merged-chr4-140971811-4	chr4	140971303	140972303	+	829.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 3 of 7)	intron (NM_001355515, intron 3 of 7)	10532.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	4.27809526075523	3.71373239025651	3.92447926916022	3.94722105865985	3.92735830433375	3.8391495176178	-0.273055091177188	0.614266833394367	0.887435546271868
Merged-chr9-96392888-2	chr9	96392388	96393388	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-28457.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.33458161434612	7.02380834425208	7.19519578603262	7.51147519075743	7.77114971321864	7.39161165580032	0.567942991157803	0.0238661978635103	0.18158911776033
Merged-chr1-191397655-3	chr1	191397162	191398162	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-621.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	8.65725340264905	8.73356562193375	8.39036253678049	8.46591599929666	8.77915701691377	8.39206448568729	-0.0604113682471571	0.794606207564359	0.950805825047068
Merged-chr17-37272864-2	chr17	37272364	37273364	+	844.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013819, intron 5 of 7)	intron (NM_013819, intron 5 of 7)	2630.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	4.50137047876238	4.66463832947282	4.79330958348648	5.1615034721778	4.94069122651176	5.48190644077244	1.2068701320756	0.00338121603438547	0.0459712783969193
Merged-chr17-64600111-4	chr17	64599609	64600609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-1540.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	6.58950257687799	7.02703947162068	7.0323502808776	6.74926406547495	7.26177639664302	7.0516457773582	0.223901872490048	0.440096984734808	0.801567033070239
Merged-chr2-121474037-4	chr2	121473549	121474549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081975)	promoter-TSS (NM_001081975)	-26.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	5.91221447931786	6.1945108209324	6.25442586929512	5.99067197202745	6.08147243371132	6.35156423719086	0.0312946592322266	0.918141018833268	0.981747877135909
Merged-chr8-37010222-4	chr8	37009738	37010738	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126063, intron 2 of 2)	intron (NR_126063, intron 2 of 2)	14000.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	5.19049732550699	5.4579590474549	5.3836566884805	5.17810857233729	5.62462028250267	6.01046088800906	0.556303051603934	0.151769124460627	0.51947368606005
Merged-chr6-145800376-3	chr6	145799942	145800942	+	832.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-7941.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.54360542156702	3.38445501678026	3.34671540985477	3.2342115750267	3.3077782151924	3.05240874839885	-0.881841582973715	0.170727591207075	0.548384536157433
Merged-chr7-63917315-2	chr7	63916815	63917815	+	875.9833369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256311, intron 1 of 2)	ORR1C1|LTR|ERVL-MaLR	458.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	4.14369704198479	4.06018613144548	4.31821724948651	3.79819723605485	3.69993352492103	4.30307798947413	-0.655909094578775	0.2237788056739	0.618518262184522
Merged-chr13-85289366-6	chr13	85288895	85289895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145452)	promoter-TSS (NM_145452)	91.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	7.37287289460287	7.20515747941264	7.32363507539312	7.15758115354491	7.32692849109235	7.09255168643846	-0.146331420681928	0.539496162469918	0.855947170442397
Merged-chr5-139386028-2	chr5	139385528	139386528	+	836.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-3876.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.79445601779152	6.06526000608445	6.10628591421023	5.46775747817053	5.58441621206187	6.04228571012539	-0.504141661835496	0.138747403152689	0.497691577630065
Merged-chr7-143008194-4	chr7	143007698	143008698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	2539.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	5.34208992947979	5.46893094951177	5.36566778360025	5.50745933232539	5.52282642783624	5.78266629599521	0.392330941679677	0.23926409240938	0.636064439885572
Merged-chr9-90110644-2	chr9	90110144	90111144	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	(TTTA)n|Simple_repeat|Simple_repeat	4176.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.49668140115671	5.82167237114207	5.43172810408899	6.06818993976155	6.35997442987551	5.73846916873185	0.86580585409989	0.0133294540953837	0.122744269186442
Merged-chr19-43751862-2	chr19	43751362	43752362	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144874, intron 1 of 8)	intron (NM_144874, intron 1 of 8)	1138.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	4.76841114685946	4.66848259043683	4.39394429227296	4.43670802903951	4.50511547082965	4.55044633838402	-0.325361267762039	0.45006824508381	0.808117861931044
Merged-chr19-29497586-2	chr19	29497086	29498086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	24401.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.8300304062026	5.74899455760933	5.99593556785966	5.98394650047415	5.84966066801864	5.84543291410886	0.0727469061666668	0.810305559038754	0.955030259072015
Merged-chr14-20703738-2	chr14	20703238	20704238	+	637.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029446)	promoter-TSS (NR_029446)	-639.0	NR_029446	76133.0	Mm.436043	NR_029446	ENSMUSG00000097577	6230400D17Rik	-	RIKEN cDNA 6230400D17 gene	ncRNA	6.11780425869813	6.25643108249719	6.33269888459568	6.29735242183046	6.51373951995529	6.35415147595353	0.271732248500429	0.329093160961957	0.72115269198792
Merged-chr1-13295712-3	chr1	13295224	13296224	+	995.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	Tigger5|DNA|TcMar-Tigger	76705.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.58071305759651	3.43978191287307	3.48789560776641	3.65142657536693	3.46230240985167	3.76518357908301	0.429961202377241	0.452855202712771	0.809457484278845
Merged-chr3-60409386-2	chr3	60408886	60409886	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63444.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.1458034878026	6.55269459520627	6.13858295251261	6.2310463195538	6.4841386495652	6.47653666711539	0.163341274829295	0.585593293846392	0.875058182172525
Merged-chr2-181410869-4	chr2	181410364	181411364	+	882.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13524.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	4.68928710819179	4.81664451653952	4.93885092013167	4.8058262515629	4.93962315508562	4.93287900560865	0.185550442512734	0.633016287943041	0.895817001600499
Merged-chr7-16252159-2	chr7	16251659	16252659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	B1_Mur4|SINE|Alu	7179.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	4.69298516190722	4.50881284790503	4.79927551918404	4.47646661276505	4.43162605114819	4.82832031475801	-0.210069320027358	0.628054323981569	0.893508518159715
Merged-chr10-40257644-4	chr10	40257138	40258138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	74.0	NM_001359491	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	7.19029378072928	7.34162753745704	7.33054302828039	7.55652060502361	7.68155278352512	7.44178108251092	0.416146936015775	0.0721361585258473	0.352744797756153
Merged-chr2-37423914-2	chr2	37423414	37424414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1011.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	4.19190145696501	4.64859619705533	4.60982710650781	4.65891235251468	4.78331787585863	5.24285998182852	0.959993039398521	0.0378742519723234	0.240696613313457
Merged-chr6-92942153-1	chr6	92941653	92942653	+	853.0	f0_balb.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	1571.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	4.78847458007479	5.48189643134429	4.96442216288076	3.62465066576792	3.49136372903071	3.87819984292535	-4.72683692725307	4.13456606299002e-12	7.1523695004007e-10
Merged-chr10-24165836-4	chr10	24165314	24166314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	16497.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.70724130570972	5.8958324172828	5.53254690324205	5.87477767175653	5.76525798440458	6.17640565413123	0.373151286892161	0.257571769580373	0.654973161886306
Merged-chr12-112668158-4	chr12	112667705	112668705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	6071.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	6.19583998980158	6.45222873117951	6.35484992408623	6.38955400923914	6.11612421831568	6.15019961750842	-0.190798238714876	0.506471025176709	0.838456691509363
Merged-chr2-165924828-2	chr2	165924328	165925328	+	665.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-39990.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.31502551085449	3.7590918738575	4.18294309477033	4.24523200164963	3.87032372455745	4.25082216855473	0.062668090642149	0.906942141594506	0.978868492078838
Merged-chr7-27481753-4	chr7	27481260	27482260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5193.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	5.23244241683406	5.40783254141954	5.53894180488409	5.60970096479431	5.4254310478527	5.73096935202084	0.370994164977656	0.276688609384072	0.674041208769616
Merged-chr13-73329585-2	chr13	73329085	73330085	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1103.0	NM_010888	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	5.40099277956737	5.46185267008734	5.61518192645745	5.86205806464813	5.98018884043438	5.85779873078131	0.766233398454549	0.0141703501988297	0.127911314747692
Merged-chr17-34647100-4	chr17	34646604	34647604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017406)	promoter-TSS (NM_017406)	-42.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	7.03869271395122	7.0084719024557	6.88652176376862	6.38486005854576	6.65037980388847	6.45221391378748	-0.742293584804184	0.00443372354509976	0.0562379982836373
Merged-chr16-26582345-6	chr16	26581858	26582858	+	894.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152416, intron 1 of 12)	intron (NR_152416, intron 1 of 12)	653.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	4.40388319329182	4.46611920165922	4.92012561358115	4.17057525632976	4.3530000817845	4.39465071283154	-0.750902326190761	0.108594949002221	0.440273571814211
Merged-chr16-10545857-2	chr16	10545357	10546357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 1 of 22)	MIRb|SINE|MIR	518.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	4.87362642469854	5.11390341197245	5.13935455329664	5.13193952848422	4.94340177205609	4.96209127341801	-0.0618395495243498	0.869614539381806	0.969841260342336
Merged-chr17-27591947-3	chr17	27591372	27592372	+	890.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-26145.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	4.33557606827943	3.99331364206671	4.47881881953171	6.43096499897821	6.90665724786681	6.14603340911661	5.0669122630948	1.57760411609377e-24	2.52440929407559e-21
Merged-chr1-152798310-4	chr1	152797800	152798800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1853.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.85063478142348	7.8467568096139	7.71530786937683	7.76152663924398	8.12184941702261	7.72681067983233	0.118305703987591	0.617393197949327	0.888810836054056
Merged-chr2-14190774-3	chr2	14190276	14191276	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	16252.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	3.02182554269248	3.05426617187354	2.94574927143279	2.93002433556217	3.10216516399921	3.13638088983166	0.21855361073568	0.744013294642924	0.93587087257216
Merged-chr1-52501512-3	chr1	52501020	52502020	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	4.7292051848918	4.64947812626097	4.69166993389098	4.60452573841606	4.66435667482303	4.79521313433432	-0.0112545413735474	0.977687792880002	0.994893491053568
Merged-chr6-31177776-2	chr6	31177276	31178276	+	744.083374	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40698.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.54356058234237	6.37313819572848	6.54342102350934	6.09926937314114	6.50514594017134	6.31003980100914	-0.266035125060308	0.353729286603207	0.740929143625235
Merged-chr2-76690638-2	chr2	76690138	76691138	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15323.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	3.48761138936298	3.53377672511055	3.76746754107258	3.74017223372181	3.38435876575252	3.63524143168235	-0.0175169376301611	0.975974655540239	0.994572735300192
Merged-chr13-107759625-2	chr13	107759125	107760125	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	72228.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	5.05883704491145	4.98054412058596	4.99352841998705	4.85681469392869	4.69628545531994	5.09150074654317	-0.29435944749647	0.448295247713879	0.807187517914313
Merged-chr4-130841772-2	chr4	130841272	130842272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49235.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.75730690957575	4.08854290585224	4.29874618605128	3.74348868216759	3.56095128280458	4.02540243435804	-0.86156395697767	0.12653615759043	0.475513530881786
Merged-chr4-120855629-2	chr4	120855129	120856129	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	830.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	5.09873995807707	5.0225781711765	5.08961966076577	5.21779013319674	5.19957214033273	5.04906603296535	0.196478775963207	0.583800010692292	0.874225271981634
Merged-chr5-121197572-4	chr5	121197089	121198089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	4.84439763433388	5.06199101969864	4.8875758263059	5.13945240296276	5.14278759269072	5.4089871236899	0.606954224310894	0.105364412275175	0.433316839677932
Merged-chr1-186749880-2	chr1	186749380	186750380	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	-522.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	5.83976213142836	5.73613704117364	5.69705864918434	5.76320906753025	5.8508213686261	5.62079701114982	-0.00926452524449223	0.976229721665632	0.994625532184756
Merged-chr9-119328755-2	chr9	119328255	119329255	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6328.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	2.49392769707008	2.76233570435887	2.68518093553321	2.77085003559471	2.62112334659647	2.99606730307495	0.77466261343711	0.31843562280928	0.712287730925954
Merged-chr3-83055414-4	chr3	83054918	83055918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016784)	promoter-TSS (NM_016784)	-120.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	6.15565017335685	6.23511111164494	6.01259030359452	6.10969215547664	6.30028745082193	5.82115866513261	-0.0617812517563114	0.840812199602989	0.962819298477451
Merged-chr9-89257208-4	chr9	89256698	89257698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45814.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.36754727503925	7.44627804063571	6.99978379110132	7.03781154598861	7.01205477844017	7.04415111057351	-0.39840511698646	0.115660898633146	0.454022364177327
Merged-chr1-159225651-4	chr1	159225146	159226146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6554.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	3.51175270691147	3.75702680228328	3.49360414000101	3.27782798548828	3.19981829547811	3.33880675942571	-1.28111679574056	0.0353742564368764	0.23089277765921
Merged-chr10-91123452-4	chr10	91122914	91123914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	549.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	8.53445133944593	8.79145105998722	8.41276326859673	8.41837750811719	8.48401635631957	8.41623870632449	-0.212677234466696	0.326503026968709	0.71871363873492
Merged-chr12-70974632-4	chr12	70974242	70975242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310595, exon 1 of 11)	5' UTR (NM_001310595, exon 1 of 11)	119.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	9.06891900167957	9.4034414870201	8.76213128879487	8.94309431252332	9.19629491115452	8.87608358098571	-0.129471587982172	0.602114965329216	0.882226875541274
Merged-chr12-111668688-4	chr12	111668220	111669220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021273)	TTS (NM_021273)	3618.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	7.07891399528562	6.87388980469382	7.22266232265149	6.97644908127684	6.97806998885407	6.99626707773324	-0.116033456731087	0.641693955544605	0.899162551833139
Merged-chr10-96365430-1	chr10	96364930	96365930	+	652.0	f0_balb.idr	Intergenic	Intergenic	139223.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.06953611359431	2.71122401707935	3.04897729462067	2.98816522038877	2.81678994839188	3.00472492687045	-0.0726738027869533	0.919462143357036	0.982034101943453
Merged-chr10-50763706-2	chr10	50763206	50764206	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-131945.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	6.3065505973451	6.63741016594539	6.74254584395126	6.66927350246355	6.79425251121852	6.57539380603944	0.190049013336075	0.494905563610762	0.832153667472614
Merged-chr9-88719418-5	chr9	88719014	88720014	+	891.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359992)	promoter-TSS (NM_001359992)	73.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	5.88758471333819	6.38610194525425	5.17853699669821	6.1033220090952	6.306012654425	5.16508134855227	0.0594847197305754	0.947014819855659	0.988007649185823
Merged-chr7-45719110-2	chr7	45718610	45719610	+	874.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009077, intron 1 of 5)	intron (NM_009077, intron 1 of 5)	1039.0	NM_009077	19899.0	Mm.3459	NM_009077	ENSMUSG00000059070	Rpl18	L18|Rpl18a	ribosomal protein L18	protein-coding	5.38251920641137	5.19436138681105	5.07860145713095	5.38649265954896	5.18644390110449	5.07147769870977	-0.0131562366511314	0.971226539260405	0.993727127580947
Merged-chr7-67462095-4	chr7	67461633	67462633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89275.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.38963466555567	7.59232827922942	7.78291597284977	7.47612400552234	7.68290171532395	7.70540938482727	0.047166911930143	0.844723074852116	0.96373428957366
Merged-chr7-46847021-4	chr7	46846542	46847542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	-40.0	NM_001136069	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.55611570665804	6.78817235054253	6.45402150510355	6.75705144749756	6.58393268553082	6.47614886824738	-0.00116140870987053	0.996618798366702	0.999127275997073
Merged-chr7-80440577-2	chr7	80440077	80441077	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-35141.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.73023055232859	4.78151853468637	4.8183322399548	4.18459006603963	4.36550418220279	4.70046271933348	-0.857866188539881	0.051457835285004	0.289206589557218
Merged-chr15-102507575-2	chr15	102507075	102508075	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009582, intron 1 of 13)	ID_B1|SINE|B4	3125.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	2.11061374452071	2.15455456538915	2.23551377376801	2.24387580881235	2.08540827214344	2.37438956710199	0.488674297504071	0.579127159373141	1
Merged-chr19-4148578-4	chr19	4148071	4149071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-92.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	7.0914322072381	7.25584856043778	7.15964278220173	7.21666812916821	7.31572631050972	7.16781505403996	0.100982329723571	0.667431189391249	0.908729013673458
Merged-chr4-142095757-4	chr4	142095248	142096248	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11444.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	6.83750587736889	6.90744608018762	6.62146546196923	6.32022638453787	6.31066360930654	5.80949983678155	-0.993124613323704	0.00102933487658397	0.0184349755511835
Merged-chr2-151974306-4	chr2	151973803	151974803	+	954.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-322.0	NM_028666	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	4.18376420953247	3.92962896731741	3.75790236293809	3.81810456345042	3.69546830097869	3.71954691445836	-0.73254961874941	0.17295815278383	0.551687207865922
Merged-chr9-44090133-2	chr9	44089635	44090635	+	867.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_016808, exon 4 of 13)	exon (NM_016808, exon 4 of 13)	5215.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	5.76902522494714	5.6555659375748	6.03563924516616	5.59605596132037	5.14407246273106	5.45533174836794	-0.779675837711084	0.0264775746920826	0.193411117108139
Merged-chr11-80523065-4	chr11	80522591	80523591	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	-13985.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	4.28187649449638	4.56949723964812	4.95971135691698	4.37982706144223	4.37136075608496	4.52514846905854	-0.491844406191202	0.293450720347427	0.690276375383417
Merged-chr19-41374001-2	chr19	41373501	41374501	+	973.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	11069.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.24768397194879	4.41411582112825	4.198901142521	4.0235187927344	4.50575335342149	4.60550988909337	0.277545055825966	0.569626625735374	0.8688875602138
Merged-chr11-94329679-4	chr11	94329166	94330166	+	707.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	1665.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	3.98263316490534	4.24191151914505	4.01283914250641	4.11027569784252	4.10149318506382	4.35438449087183	0.273224334114402	0.575574262468075	0.871241845502166
Merged-chr19-42045438-4	chr19	42044926	42045926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-425.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	4.13448448571624	4.45853201391537	4.30533644960314	4.19841563144277	4.08238627700582	4.14375544571174	-0.461958877698279	0.327375346271055	0.719537424389084
Merged-chr1-84838289-1	chr1	84837789	84838789	+	819.666687	f0_balb.idr	intron (NM_133975, intron 1 of 40)	intron (NM_133975, intron 1 of 40)	1015.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	6.85522105854431	6.98735544952277	7.01926412970576	7.08476301670483	7.05959966454563	6.91167221407994	0.110528464895646	0.649956910502325	0.902467704262052
Merged-chr17-53569909-4	chr17	53569399	53570399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2928.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	6.85473177441474	6.84333026818804	6.67104009173257	7.38111909982546	7.40833239144721	7.2031082128935	0.8169990054163	0.000804238045212754	0.0152354649035628
Merged-chr4-43044057-4	chr4	43043549	43044549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2171.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	6.2756151173324	6.52019923151247	6.5410763310567	6.46986886507928	6.56708388510421	6.69717347634182	0.209213147268395	0.441734097764942	0.802865928078521
Merged-chr2-146010937-4	chr2	146010450	146011450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76166.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	4.00866904227328	3.98811369038628	4.05238829179219	4.4888692844512	4.37424963935208	4.71040435992401	1.38135889593661	0.00323057651872243	0.0446157362605571
Merged-chr6-30336396-2	chr6	30335896	30336896	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-31857.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	4.96776480050601	5.20349632400815	4.7286741933092	4.8833439277496	5.10721716700723	4.79640361366595	-0.101354862996305	0.803064161707072	0.953422605427866
Merged-chr2-51089067-4	chr2	51088574	51089574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60037.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	6.57469674538312	6.45608940876921	5.99636357899262	6.31939211858906	6.40947730965952	6.26379183664015	-0.0711294900130703	0.813954666225711	0.955984497572397
Merged-chr11-32489183-2	chr11	32488683	32489683	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	intron (NM_001361561, intron 1 of 1)	33813.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	3.1722018191885	3.08966208559209	3.07628790852714	2.89508142883671	3.06858800084507	2.96798634715565	-0.602148266954187	0.371070444749833	0.755284480595502
Merged-chr1-155094943-2	chr1	155094443	155095443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	4693.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.39130131393891	3.007605321792	3.0806707407144	3.26827308784967	3.22575735455863	3.21452525697415	0.254030729226716	0.699801880799789	0.92073487393803
Merged-chr5-139398005-4	chr5	139397516	139398516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	8112.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.82213890009383	7.68735321454393	7.43526891349632	7.22717580317278	7.38332108096642	7.3269998771525	-0.511761294100662	0.0327254882954032	0.220267483870986
Merged-chr10-54122018-4	chr10	54121512	54122512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	46090.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	4.52267302341888	4.49289873148748	4.88777981342291	4.61431821652759	4.61996765064474	4.81351045838276	0.109122747585036	0.797770464107344	0.951807414581074
Merged-chr11-51849346-2	chr11	51848846	51849846	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199299, intron 1 of 11)	intron (NM_199299, intron 1 of 11)	8135.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.025196576234	3.18179276597776	3.11606708742918	3.20602696431335	3.06312045006571	3.40942555794899	0.496052393959497	0.447543188744064	0.806548958484392
Merged-chr2-128065752-4	chr2	128065251	128066251	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	RLTR16|LTR|ERVK	-60287.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.37041424345628	3.36401834785698	3.45681845516654	3.55210363789303	3.31451439078781	3.24061900388119	-0.0659368949426512	0.913384493297733	0.980606122501004
Merged-chr5-139288252-8	chr5	139287784	139288784	+	880.21875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	34787.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	6.25122006083781	6.14754944628698	6.86371086070867	6.6335745627283	6.45868177884278	6.47843034818737	0.124007463812924	0.697801866101479	0.920111182740464
Merged-chr16-36930992-4	chr16	36930506	36931506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-3977.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	7.18118214212349	7.09948198166922	7.03971413703199	7.36431831922242	7.33663090051281	7.52428422208007	0.441496793655402	0.0594308099987398	0.315646860015662
Merged-chr2-27691187-7	chr2	27690645	27691645	+	949.9904789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	13944.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.74888871768238	6.81029144678606	6.78605196369765	6.48106313032278	6.46973380994441	6.8730671072851	-0.270936371822175	0.31650849224555	0.710612278530442
Merged-chr10-128803821-4	chr10	128803411	128804411	+	917.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358267)	promoter-TSS (NM_001358267)	56.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	6.28258739892122	6.10329782877961	6.37307468723146	6.15666330243549	5.9608045977602	6.04937183696796	-0.334284401784693	0.248679633122454	0.645819769301048
Merged-chr9-37230072-4	chr9	37229542	37230542	+	908.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	21726.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	3.30347658521432	3.00694829323466	3.18738349655561	2.88609136761173	2.77598846830915	3.08812841565181	-1.19970348291149	0.0893873439869257	0.397209191907296
Merged-chr3-28038502-3	chr3	28038017	28039017	+	780.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	54346.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.14010623915289	4.06027036436383	3.78311643415781	4.25340655059888	4.22204229430113	4.25985660686192	0.65057014885323	0.188479179560799	0.574089449187164
Merged-chr7-79743115-4	chr7	79742630	79743630	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037927)	promoter-TSS (NM_001037927)	1.0	NR_153403	18631.0	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	4.27263162018536	4.78709289317392	4.1258703257989	4.41642449024737	4.09285780779113	4.55813506954715	-0.186751644893153	0.716089845935652	0.926567177471454
Merged-chr19-21818266-4	chr19	21817762	21818762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	39922.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.83234653094962	7.18659404499562	6.73979615584882	6.98516289660322	7.14831455681366	6.95050145328937	0.140096619900287	0.600591187075436	0.881747178918412
Merged-chr2-150826615-2	chr2	150826115	150827115	+	825.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 16 of 19)	intron (NM_153781, intron 16 of 19)	15955.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.36810733437987	3.46843856379084	3.99149371021329	3.16964661010742	3.0949025942545	3.45236523540272	-1.48797433221891	0.0259385582221889	0.1909489120191
Merged-chr18-52768495-6	chr18	52768037	52769037	+	860.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199154, intron 1 of 10)	CpG	393.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	2.14295105917455	2.11346458725083	2.35520361387255	2.32914302898877	2.04715718299657	2.16788953165992	-0.134240849202404	0.881583848019567	1
Merged-chr8-84982290-4	chr8	84981801	84982801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3553.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.54353412268858	8.4191150687894	8.20580981282853	8.42137754827148	8.71018378292891	8.38613634737249	0.164835817792209	0.469720250174607	0.819089267483888
Merged-chr2-83728567-4	chr2	83728087	83729087	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	4190.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.16150738510803	5.57350085712668	5.52378501773017	5.5340153678845	5.55721852494772	5.7434638888591	0.340065061866933	0.326147779029518	0.718556399216867
Merged-chr10-79533395-4	chr10	79532904	79533904	+	991.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302389, intron 1 of 5)	CpG	383.0	NM_001302442	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	4.0941334382515	3.82755432649266	3.86418591680683	3.78455752437684	3.67585850756226	3.88358322252272	-0.506645815171931	0.335663813450478	0.725791658167127
Merged-chr7-4526454-4	chr7	4525849	4526849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 9 of 11)	intron (NM_001033548, intron 9 of 11)	-3821.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	5.25133734109388	5.44910345149192	5.5344938433536	5.67707458519947	5.33776110782515	5.32911028162995	0.0931159748010508	0.79070408712758	0.949584063682145
Merged-chr15-98568544-2	chr15	98568044	98569044	+	894.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-908.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	7.05135185143042	7.26141227740625	7.11475352002592	7.16855322568808	7.45639269982116	6.81448673029954	0.0596992514943836	0.82936008150249	0.960024094417547
Merged-chr17-5602650-2	chr17	5602150	5603150	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	110050.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.48814906918709	5.08177608139044	5.04116735135434	4.72725390985881	4.39491154384015	4.72861415360336	-1.3587520012411	0.00112472599658991	0.0197231192253432
Merged-chr4-8822721-4	chr4	8822204	8823204	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	71380.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.65277891800967	4.0628126888554	4.11026789081863	3.83726863454432	3.87133770777	3.73961276638927	-0.413423700355144	0.446449229825259	0.805889760011081
Merged-chr10-13981792-1	chr10	13981292	13982292	+	562.5	f1_balb.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	15413.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.39155277102732	4.41268926287373	4.35632922443053	4.34843395798854	4.36539011441038	4.28838870050222	-0.134438048195041	0.759472361356929	0.940445506336499
Merged-chr15-81084045-4	chr15	81083566	81084566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	20981.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.37731204895301	8.32148223706608	8.01122348246815	7.92096717900806	8.10998275975927	7.65639731771473	-0.47153852430445	0.0546069046002449	0.300134177817371
Merged-chr8-35716678-2	chr8	35716180	35717180	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	109879.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.41069708057256	2.38664956797767	2.50795391771852	2.98114478068254	2.81707359637807	2.96434880565739	3.15390073838058	0.000442136651300944	0.00954822384672955
Merged-chr16-91438231-4	chr16	91437724	91438724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26880.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.06030078016871	5.8234960722709	6.02526623163595	6.03253942009837	5.66207273604889	5.746443112514	-0.263030689131176	0.405879213288572	0.780439975167702
Merged-chr9-99240766-3	chr9	99240258	99241258	+	917.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2583.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	3.319662675776	3.17940761632952	3.28830030060807	3.13190225543857	3.08841846101154	3.41292733503692	-0.215123170572643	0.735856999250895	0.932936187992169
Merged-chr6-137736897-2	chr6	137736397	137737397	+	966.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011499, intron 2 of 9)	intron (NM_011499, intron 2 of 9)	1815.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	2.78798170307106	2.7131771107429	3.14145556317682	2.78711406384671	2.83118156489912	2.87338289161338	-0.279577632274811	0.702458650590066	0.921908665861083
Merged-chr16-92696828-4	chr16	92696337	92697337	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009821, exon 1 of 5)	5' UTR (NM_009821, exon 1 of 5)	492.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.16533572827805	6.1197510043216	6.03568973584332	5.87183036051274	6.03538083850548	5.53685469562392	-0.456174218756295	0.150985138382744	0.5182047532504
Merged-chr2-69635899-4	chr2	69635354	69636354	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-11401.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	3.9114174332761	3.74255741768168	3.71350777150181	4.13640320962114	4.15621529788594	3.99699886186573	0.931045819277814	0.0678684808628026	0.340919789463473
Merged-chr2-27716515-4	chr2	27716006	27717006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	5923.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.32767159265076	7.43483121823696	7.10074328359891	7.04139999276102	7.03520450231464	7.32495008316975	-0.25228140324372	0.316714095589943	0.710742716211415
Merged-chr2-73515218-2	chr2	73514718	73515718	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	14269.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.45993579725543	4.35307951378574	4.64157175590931	4.62922550987699	4.57344079659217	4.62912432367651	0.315949536501673	0.455258133335052	0.810850567748235
Merged-chr1-169532308-3	chr1	169531812	169532812	+	849.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-848.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	4.16422161968629	4.32439115149601	4.2955036891031	4.05980067017141	4.32758426932813	4.44666931284778	0.0602600971861231	0.897701112295494	0.976134735553722
Merged-chr2-122369180-4	chr2	122368667	122369667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013829)	promoter-TSS (NM_001013829)	-249.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	5.54139567586308	5.18516266743688	5.09381241506999	5.46711201030399	5.16185295049052	5.38858299332149	0.0845514691842694	0.82028153381065	0.957560934711718
Merged-chr7-80838482-2	chr7	80837982	80838982	+	787.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23626.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	6.48934753585579	6.47731223157377	6.4480733784245	6.5308550533268	6.4180468339685	6.62768546847778	0.0779790199607725	0.767204568399045	0.942573703853445
Merged-chr6-13677567-4	chr6	13677050	13678050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	CpG	416.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	7.60081982048702	7.32691979418709	7.02216560699546	7.49155235632545	7.10381671763213	7.41950729961553	-0.00264212595385574	0.992355202615593	0.998523796268552
Merged-chr14-7972148-4	chr14	7971691	7972691	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 6 of 7)	intron (NM_007870, intron 6 of 7)	21991.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	4.28970089594137	3.79367400123429	4.26349545687455	4.25021941729566	4.06188089599002	4.28739756469037	0.186943817644284	0.714219887552473	0.92578331599187
Merged-chr3-69679985-4	chr3	69679506	69680506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1C|LTR|ERV1	-42049.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.98391750577376	5.20262107949095	5.92369648938798	5.88535561127922	5.88522431298296	6.00698147461664	0.315490842336957	0.393120857272318	0.771490835516741
Merged-chr4-117218686-4	chr4	117218199	117219199	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	33218.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	5.39489966347789	5.15590240942194	5.62943854404906	4.70037036679885	4.99509997012871	4.94658111600137	-1.05633949153607	0.00695377610956901	0.0777492344161541
Merged-chr13-64172326-4	chr13	64171822	64172822	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 2 of 7)	intron (NM_019986, intron 2 of 7)	10456.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	4.09845600835648	3.99880770503792	3.89706129585978	4.6314520784262	4.45515259296277	4.1303426659813	1.15599290687207	0.0190858930071607	0.156632703949091
Merged-chr5-23433950-4	chr5	23433430	23434430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	423.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	9.40698302862993	9.65735548370838	9.06367102244807	9.3709562350848	9.58311373084222	9.2388909307754	0.00612248563816164	0.979676730484135	0.995316120471372
Merged-chr8-120670708-1	chr8	120670208	120671208	+	570.0	f1_c57bl6.idr	intron (NM_009941, intron 2 of 4)	intron (NM_009941, intron 2 of 4)	2388.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	2.46781775840433	2.52913211725633	2.65428971547799	2.32544899874525	2.65556874974141	2.60480095111659	-0.0668932794906784	0.934951309842149	1
Merged-chr11-58965687-1	chr11	58965187	58966187	+	584.0	f1_balb.idr	intron (NM_031172, intron 2 of 6)	intron (NM_031172, intron 2 of 6)	1906.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	3.73729189234092	3.53920769375973	3.9794148706563	3.92010586779916	3.65308327186171	3.70394628438001	0.0251633107919439	0.964108960443431	0.991332234106212
Merged-chr13-43786464-4	chr13	43785961	43786961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	1349.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.25469925129904	8.25228692179098	7.70705649777604	7.63985013923198	8.08905127381243	7.76351767597154	-0.358165338766799	0.183076876864659	0.566085379224821
Merged-chr7-67318855-2	chr7	67318355	67319355	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 2 of 11)	L1M3|LINE|L1	54003.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.40456227323529	3.16472001714775	3.09464535141791	3.24269181902213	3.10044846708154	3.28600477105597	-0.104837193107106	0.871124250703822	0.970222087171093
Merged-chr14-31131034-4	chr14	31130539	31131539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2109.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	4.08625052931246	4.02534455698063	4.15380674459319	4.17623985650488	3.50985007552688	4.0371374626996	-0.448168613330493	0.424662498617711	0.792751602651437
Merged-chr17-33771132-4	chr17	33770627	33771627	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	10448.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	3.30799491996392	3.87053241669299	3.46738756573404	3.38931750933674	3.27452910486541	3.48358418114936	-0.722179996559995	0.25128343741033	0.648736961217461
Merged-chr11-87086805-4	chr11	87086292	87087292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024262)	promoter-TSS (NM_024262)	-15.0	NM_024262	74133.0	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.11866931740354	7.24873131809421	7.11396125811525	7.11485012332394	7.21586507401023	7.04103444864485	-0.0501817767250399	0.832706287997798	0.96072968402275
Merged-chr7-104314894-3	chr7	104314406	104315406	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040749)	promoter-TSS (NR_040749)	-125.0	NR_040749	622070.0	Mm.486406	NR_040749	ENSMUSG00000087175	Gm15133	-	predicted gene 15133	ncRNA	4.30433995440929	4.17898468467998	4.77714454278496	7.70788844872405	8.37653219695249	7.64432571047922	10.1694946631168	1.76603948228535e-17	7.85821461187163e-15
Merged-chr9-62979651-2	chr9	62979151	62980151	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	1228.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.0162506793832	4.95934276197047	5.13341933406803	5.0236891750239	5.21030562689128	5.09720802311194	0.180921955036362	0.620550770049198	0.890213289123814
Merged-chr10-4431007-1	chr10	4430507	4431507	+	811.0	f0_balb.idr	intron (NM_001358796, intron 1 of 13)	MTEb|LTR|ERVL-MaLR	1381.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	7.12694641214904	7.34213665871581	7.23466759433748	7.12956246171518	7.30850495467727	7.53310694442937	0.135197274518737	0.587169445470321	0.875769926947203
Merged-chr11-59839825-4	chr11	59839326	59840326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011991)	promoter-TSS (NM_011991)	-59.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	7.33823562411934	7.58239948637609	7.72368333866226	7.58636655236609	7.64767379350029	7.55349858674872	0.0669320494968613	0.776463718842619	0.944851388839507
Merged-chr4-133825770-2	chr4	133825259	133826259	+	755.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	48972.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.42136387330571	3.60509989723457	3.80548741776715	4.2473994337863	3.93633773605845	4.52311983073449	1.98609388288065	0.00049750640636845	0.0104536649144207
Merged-chr6-136827497-5	chr6	136827036	136828036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021714, intron 1 of 11)	intron (NM_021714, intron 1 of 11)	680.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	8.95384992042118	9.34981243667598	8.5181705020945	8.66110717393119	9.10780558260318	8.50480732281404	-0.276029346261938	0.344098028400514	0.732901824706566
Merged-chr7-73546721-3	chr7	73546221	73547221	+	800.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 4 of 4)	intron (NR_037569, intron 4 of 4)	-4975.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	4.88710086434029	5.29745577647974	5.2693749593694	5.36175002835883	5.23313465461556	5.17106321814295	0.199528558554395	0.591747315117321	0.877726471452175
Merged-chr9-21720580-2	chr9	21720080	21721080	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2996.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	3.3812145989766	3.03083548534229	3.29883031772169	3.5075313304837	3.39825207637438	3.31334662248525	0.655980711287791	0.301595431374414	0.698329047579091
Merged-chr4-9650079-1	chr4	9649579	9650579	+	785.0	f1_balb.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-6362.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.16669016354314	5.65055157645802	5.72642173853974	7.01348862180613	7.10957635878944	6.59789423905732	1.71603792059246	1.12957596704262e-07	7.96523364963411e-06
Merged-chr8-13785737-5	chr8	13785195	13786195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025924)	promoter-TSS (NM_025924)	80.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	7.29578971003718	7.30599104180588	7.24695007123385	7.57831765732516	6.85413195276623	7.20954393134022	-0.0546900346174964	0.846494408067205	0.964032502175602
Merged-chr14-55607510-2	chr14	55607010	55608010	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159418, intron 6 of 8)	intron (NM_001159418, intron 6 of 8)	2931.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	2.55734535989162	2.74410731636224	2.72994299920987	2.75198062566636	2.54744411597156	2.8630812238697	0.230439087849322	0.762093505152083	0.941421603620869
Merged-chr19-3930372-2	chr19	3929872	3930872	+	673.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	-656.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	6.80736306788735	6.87528092987646	7.04771946519839	6.76424893077616	7.27831741302962	7.19089215716331	0.290996831597337	0.285918013864614	0.683371839054896
Merged-chr15-80030659-4	chr15	80030223	80031223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-15915.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	7.20605902135993	6.93723194399037	7.2233920900714	7.16949183704457	7.44475920983155	7.30369405131172	0.284068490381644	0.253848318539361	0.651117231535132
Merged-chr10-79856073-4	chr10	79855559	79856559	+	884.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 1 of 13)	intron (NM_001077363, intron 1 of 13)	-1088.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	7.60674109860274	7.89426714421447	7.88566206943104	7.77460409209686	8.18801503632207	7.92635931708911	0.257400048201836	0.289601248729491	0.687296395388689
Merged-chr19-45789602-2	chr19	45789102	45790102	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6049.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	2.45942135069677	2.283534924312	2.48421115975776	2.57613710571367	2.49062779613223	2.62143040294017	0.931404910075329	0.249586550909408	1
Merged-chr7-132735393-4	chr7	132734887	132735887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41529.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.63434193375445	4.39867504308021	4.76489294304235	4.24806018836497	4.30775368411431	4.39996216959155	-0.720622941525496	0.105821283365273	0.43426599656035
Merged-chr6-83010202-4	chr6	83009700	83010700	+	929.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	RMER6B|LTR|ERVK	23271.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.43164704170072	6.59211594464167	6.66576650062596	7.11123113376362	7.18975704839573	6.96489601086175	0.83170140717123	0.00103924197284054	0.0185485298318567
Merged-chr10-21941369-3	chr10	21940857	21941857	+	785.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-37315.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.59133850536059	3.42365903927337	3.31899324313795	3.62690680935907	3.84044406452909	3.67813472012012	0.939186769260691	0.106985047942633	0.436519724816527
Merged-chr16-90727444-4	chr16	90726948	90727948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025642)	promoter-TSS (NM_025642)	-77.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	7.50399699207365	7.55339815740356	7.18260614362808	7.35534680629837	7.63277386630583	6.99405492892326	-0.0938273350605664	0.73672949770002	0.933269209783409
Merged-chr10-118053240-4	chr10	118052743	118053743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-88544.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	9.16578255977068	9.27200260585362	8.639197821891	8.74364028160529	9.23380059719687	8.56538962993829	-0.235360687129618	0.401689250090037	0.777748903350594
Merged-chr2-118926490-4	chr2	118925966	118926966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028117)	promoter-TSS (NM_028117)	-31.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	4.97246005611083	5.20909140004778	5.46784235797264	5.31549002828276	5.43442302939798	5.41689434206585	0.339965052306045	0.348403844511933	0.736272339466372
Merged-chr2-160335251-4	chr2	160334743	160335743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7749.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.80975679920647	4.77842913501991	4.59366205440319	5.02552615743848	5.03664332035895	4.97829738470698	0.613192638263701	0.112780202659459	0.448540764710779
Merged-chr6-54284515-4	chr6	54284019	54285019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	11697.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.67626636247129	6.66925801515907	6.41945946689092	6.4324001639434	6.60272915665317	6.0431643119752	-0.327997170031281	0.27313749070674	0.670407465738777
Merged-chr4-141659403-3	chr4	141658908	141659908	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	4707.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.580422225141	5.88934133567269	5.70947386689971	5.83536052912883	5.58884823652572	5.42329972913665	-0.188352313742347	0.574302231346454	0.870582911329883
Merged-chr9-118693916-2	chr9	118693416	118694416	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-17776.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.34017531210075	2.23856904638379	2.54038135053434	2.36268528226713	2.263482121113	2.29918415206778	-0.435032420194364	0.607783943936697	1
Merged-chr4-86692977-2	chr4	86692446	86693446	+	777.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22887.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	2.323210708511	2.22223675754221	2.16886586989551	2.31042450987423	2.21411014428581	2.43949945614251	0.533285014569039	0.536839067943734	1
Merged-chr5-139286751-4	chr5	139286240	139287240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33243.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	7.98154595206669	8.10748844801706	8.16640652482443	8.00111759744598	8.33515428810375	7.91898493994988	0.0287741569983382	0.901798285021473	0.977356766938531
Merged-chr15-93335968-4	chr15	93335485	93336485	+	739.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	950.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	5.20154224344029	5.16994927376094	4.98366580639385	5.48852747240513	4.90765357317592	4.9350152850921	0.0311688388664821	0.938316549559897	0.986349025415381
Merged-chr11-115701207-2	chr11	115700707	115701707	+	815.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B3|SINE|B2	-1279.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.16664295217003	6.32485683732083	6.28798569840703	6.44081448783812	6.73111558111096	6.6655383636426	0.589116529450359	0.0317639246985054	0.216150804189643
Merged-chr11-119229128-4	chr11	119228612	119229612	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	540.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	4.70459182108976	4.5154976571164	4.21699189318498	4.17623577013144	4.08378979187917	4.03236219118124	-1.08180319127606	0.0240286269444547	0.182291574653007
Merged-chr5-101831106-2	chr5	101830606	101831606	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65976.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	1.99879232660355	2.12631282367016	2.13766634210395	2.21541276174597	2.11844418495269	2.40676981049208	1.15965785047706	0.20208145638015	1
Merged-chr5-113835216-4	chr5	113834705	113835705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4704.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	5.21909731089796	5.27817489183861	5.40446089678134	4.98615076482684	5.30938204643098	5.22371646048296	-0.227595202257682	0.527125003418603	0.849822081772749
Merged-chr7-128133256-3	chr7	128132740	128133740	+	626.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 6 of 29)	intron (NM_021334, intron 6 of 29)	3672.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	6.05335337383496	6.24766375754041	5.97231830140873	6.05339721690135	6.20903641411317	6.50952167349286	0.269140036367725	0.376639428240053	0.759336465825071
Merged-chr5-113776379-4	chr5	113775857	113776857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 3 of 4)	intron (NM_025526, intron 3 of 4)	3545.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	7.25880772209291	7.13952460406544	7.2162040387204	6.9374498897185	7.30018457681527	7.11490985544431	-0.109734009425568	0.658330396054214	0.905008518287058
Merged-chr10-59636887-4	chr10	59636378	59637378	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20186.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	6.5369843409423	6.58239284074235	6.3069721028629	6.35753344929648	6.18141833134371	6.08522942117188	-0.447450749747511	0.113019449382182	0.449191427529329
Merged-chr6-54772219-4	chr6	54771722	54772722	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44694.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.54372088207301	4.62109454875454	5.00559372020967	5.00342759616449	5.01362092133313	5.25667315077178	0.807385478854977	0.046783580688311	0.273714539580438
Merged-chr16-91841132-4	chr16	91840628	91841628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	90502.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	8.70801868858271	8.33394249356883	8.10688043319184	8.31824225606884	8.65184441388164	7.86758764767614	-0.11779774979039	0.685854775510814	0.916514432375155
Merged-chr4-154161620-2	chr4	154161120	154162120	+	607.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-936.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	4.79225439169303	4.35267955684387	5.21251960032659	5.03183440376694	4.75549155485466	4.88783204828309	0.157922406851448	0.731870078409351	0.931580931379612
Merged-chr6-52424654-4	chr6	52424167	52425167	+	805.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67784.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.37046208946423	4.20827068332777	4.31174786260202	3.9576417238995	4.10503396853173	4.05669331921916	-0.713303674718191	0.132724841327836	0.487556413062975
Merged-chr1-191909679-2	chr1	191909179	191910179	+	601.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009579, exon 2 of 2)	exon (NM_009579, exon 2 of 2)	-2152.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	2.98445449303786	2.93621023353541	3.08166836802836	2.97943893935464	3.0651080372435	2.85120270122167	-0.116176861750022	0.8653799047815	0.968641478520565
Merged-chr15-50360809-2	chr15	50360309	50361309	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	528240.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.28852224115792	3.335784841528	3.34525555587143	3.14423103186835	3.69350248283808	3.04950282393191	0.0624147458343293	0.929043026017822	0.983986741644278
Merged-chr1-183116739-1	chr1	183116239	183117239	+	662.0	f0_balb.idr	intron (NM_001278218, intron 3 of 8)	intron (NM_001278218, intron 3 of 8)	30818.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	3.04791994866772	3.03123877367062	3.4810961214492	3.27643845976851	2.97258038239866	3.11862324069313	-0.294022860094986	0.668142444008423	0.908976375106763
Merged-chr19-46512268-2	chr19	46511768	46512768	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	B3A|SINE|B2	10620.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.64958080522677	7.45532049531171	7.10832997534482	7.22704640241561	7.17488721959242	6.77926603341855	-0.516953117366075	0.0639291032013255	0.329497820811193
Merged-chr19-4044348-3	chr19	4043854	4044854	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-2133.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	3.22792148717211	3.11039995724429	3.93804981845626	3.57985222358082	3.36204010022529	3.53601915845431	0.0612573726286897	0.929000564776577	0.983977379981026
Merged-chr5-16973562-6	chr5	16973149	16974149	+	952.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	419748.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.9917360600775	5.10685876211955	5.5122525574045	5.47187599162668	5.68613849176994	5.54721756220216	0.719645142987964	0.0469705722681412	0.274364856250438
Merged-chr13-37331183-4	chr13	37330698	37331698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14147.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.28857581509315	4.90773469309716	5.34729967763239	5.15272582663502	5.01538895984585	5.69581671687962	0.241670715977169	0.556893910696826	0.863865112858805
Merged-chr6-118139188-4	chr6	118138678	118139678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030165)	promoter-TSS (NM_030165)	-38.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	6.81413310538636	6.16350437379519	6.54333297127939	6.32281526481333	5.70703222132591	6.33579338073571	-0.63956411632278	0.0678906142492837	0.340961023083921
Merged-chr19-32179320-2	chr19	32178820	32179820	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31693.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.01445681285691	4.00285187018341	3.72726453139009	3.58718302567993	3.6431503019438	3.45269251705073	-1.19364686778644	0.034593813378853	0.228038186628083
Merged-chr1-51502313-4	chr1	51501736	51502736	+	693.137512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23837.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.99423114502258	5.30831962719991	5.17228450840792	5.20166194046502	4.94758474649421	5.57993407708488	0.183012766350784	0.643984041672701	0.900016543869792
Merged-chr9-78503717-2	chr9	78503217	78504217	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21993.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	2.4607186213966	2.31890268148232	2.57578006964516	2.3495904922814	2.31349467418184	2.64891705743711	-0.0734573881401513	0.92984259871481	1
Merged-chr5-65883585-4	chr5	65883092	65884092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	20023.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.2826382120313	6.06988981044484	6.31962138796025	6.23781750701084	6.14657534827973	6.1141068590901	-0.092341038176408	0.745395299686583	0.936169170413447
Merged-chr8-66861120-4	chr8	66860622	66861622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	CpG	905.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	5.94464474508384	5.89267799034193	5.15800897059206	5.96130705707166	5.53745387772882	5.33644615401391	-0.144057831616201	0.723778191283418	0.929128417950564
Merged-chr2-35399507-2	chr2	35399007	35400007	+	634.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145821)	TTS (NM_001145821)	-2333.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	2.4762058782423	2.3335988869558	2.72930100805313	2.56903989675991	2.12198261759944	2.29403480451211	-1.10421953295066	0.237317207631964	1
Merged-chr9-52288082-4	chr9	52287564	52288564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119953.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	3.47481744349334	3.40666739393408	3.20627663578189	3.20852673524699	3.09536864000312	3.27899781237198	-0.746897669399042	0.236808535707167	0.633237835240546
Merged-chr7-80639267-3	chr7	80638775	80639775	+	760.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 3 of 4)	intron (NR_040343, intron 3 of 4)	3258.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	5.20901590236439	5.04454841141837	5.11670712007418	4.83345294276273	5.04022242523942	5.36448174679338	-0.0783296929263245	0.838720184227261	0.96255643337768
Merged-chr17-26661919-4	chr17	26661414	26662414	+	970.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-14482.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.75412053033203	4.72202541497012	4.79540417924265	4.54219069449518	4.66033369152156	4.93112236767708	-0.100772412069085	0.805192000956355	0.953798874874682
Merged-chr5-144248379-4	chr5	144247879	144248879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	3942.0	NM_001163709	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	4.81622480516429	4.79245541336781	4.9287187896143	4.7824858180668	4.36233865686471	4.65785939085541	-0.557807560204494	0.184063874665704	0.567674681607678
Merged-chr2-8660717-4	chr2	8660221	8661221	+	931.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-528794.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	3.27657594054734	3.48002293777988	3.70702100700123	3.50404050775658	3.64620656366736	3.46299104163178	0.188982406785818	0.752062018763823	0.938053911816822
Merged-chr19-47579599-7	chr19	47579126	47580126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009289)	promoter-TSS (NM_009289)	-393.0	NM_009289	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	6.29317980979197	6.08835807752376	6.45311876892697	6.50474510754496	5.52019132132879	5.96732096427729	-0.368405462695327	0.325876460468699	0.718336010416482
Merged-chr5-122769435-4	chr5	122768903	122769903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	ID_B1|SINE|B4	10007.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	6.59465037513048	6.69605048267677	6.17948970480342	5.87012298404591	5.95761759259718	6.1080210995301	-0.90757682189441	0.00270332238427833	0.0388964290076139
Merged-chr19-56801120-3	chr19	56800615	56801615	+	812.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170757, intron 7 of 14)	intron (NM_170757, intron 7 of 14)	12568.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	6.02238274711845	5.85891109693749	6.01855459299633	5.13711204138761	5.34678060905047	5.54039812814065	-1.15557674712314	0.000476970192055635	0.0101295905412367
Merged-chr19-24990616-4	chr19	24990110	24991110	+	981.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8919.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.98056725703453	5.77134833444537	6.19272736088572	6.18935015871456	6.42717293612445	6.45788701476248	0.644108050081014	0.0320548328930375	0.217377223746036
Merged-chr8-77444887-4	chr8	77444298	77445298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72258.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	5.91431531488209	5.63345822306222	5.60908689957923	5.10201048503802	5.14888680631495	5.41481526817492	-0.988830039540374	0.0043038436911736	0.054967647867256
Merged-chr10-77290391-2	chr10	77289891	77290891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_004429)	TTS (NR_004429)	31091.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	4.31162967197935	4.82146791425305	4.45188884270068	4.56452104967137	4.41113712343964	4.08123732343169	-0.446088251991501	0.362220148327687	0.747732809914909
Merged-chr19-45784317-2	chr19	45783817	45784817	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-764.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	5.58541936059871	5.54702902520373	5.77241581225289	5.67721926870945	5.41260045848844	5.60117726351189	-0.12868219403392	0.694755709101341	0.919217788511748
Merged-chr17-3557739-6	chr17	3557076	3558076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045302)	promoter-TSS (NR_045302)	137.0	NM_146074	224481.0	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	5.84905463532747	6.65337004249739	6.35758055022169	6.23918124968785	6.61990861056522	6.2377760934778	0.0861241336669798	0.803197927325161	0.953422605427866
Merged-chr8-69011717-1	chr8	69011217	69012217	+	561.0	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-77019.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.01805743758686	4.80470543449862	5.03840071940683	5.32700669312873	5.32547163226126	5.73568325941683	1.07661633915728	0.00433430056916985	0.0552887447124766
Merged-chr13-63634517-1	chr13	63634017	63635017	+	543.0	f1_c57bl6.idr	Intergenic	Intergenic	-61057.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	3.16661216764804	3.05293701302205	3.07683449721237	3.67549721596425	3.60080221485269	3.61796074069506	2.16954741058401	0.0007142704274895	0.0138700148729396
Merged-chr2-11602646-3	chr2	11602143	11603143	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	556.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	7.81209117295169	8.2379498858494	7.84478504904241	7.91971754670307	8.06372741047061	7.82565221519417	-0.0584098864842487	0.80950309176653	0.954749848816598
Merged-chr13-9173597-4	chr13	9173100	9174100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	79719.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.81863701991016	4.67116387294583	4.7733941918958	4.70010260164603	4.83065628797957	4.7621224980029	0.0322242267642387	0.935033792386495	0.985758101267319
Merged-chr11-100326233-2	chr11	100325733	100326733	+	857.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6BA|LTR|ERVK	6284.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	4.64881854748696	4.4042814448591	4.32176260074763	4.12750392218649	4.40393227452945	4.34464515942173	-0.442601290304426	0.336873265670075	0.726861060604748
Merged-chr2-30133223-4	chr2	30132715	30133715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-531.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	8.72241009002551	8.85680279039029	8.48599343492948	8.64763953828737	9.08218867799614	8.3044063695634	0.0360137461557644	0.893922545454015	0.975281562029123
Merged-chr12-101759366-2	chr12	101758866	101759866	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40843.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.37526630939145	4.62456220865334	4.62657616442217	4.59873879597624	4.80497817634631	4.48370618077117	0.249630404204637	0.562982529740152	0.865755360453189
Merged-chr7-137411089-4	chr7	137410556	137411556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-300.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	8.590389695723	8.78335775892223	8.50719759087551	8.61526612100049	8.96597177736484	8.51302583592557	0.11617835387572	0.617209984262461	0.888787504465168
Merged-chr8-8084793-2	chr8	8084293	8085293	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	575980.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.49607880779049	2.68001078260954	2.53310689298821	2.72828973549189	2.54393908590802	2.73458550425667	0.52500338970301	0.497892412749508	1
Merged-chr15-82341292-4	chr15	82340690	82341690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	11.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	6.20657666817212	6.1793213002468	6.26300776121	5.94221151441129	5.59023719697415	5.70277688438959	-0.809860976588022	0.00766611442053389	0.083481487855488
Merged-chr1-185333013-2	chr1	185332523	185333523	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347212, intron 1 of 7)	intron (NM_001347212, intron 1 of 7)	864.0	NM_001347212	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	4.37767784517299	4.75022310571581	4.46505128908198	4.52004957061362	4.71740699484054	4.73625149553039	0.272637206184058	0.529993684229171	0.851070276054813
Merged-chr13-24442493-4	chr13	24442001	24443001	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	27379.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	3.6930605549137	3.5513139138371	3.37417547907198	3.71477926022275	3.70452712915088	3.87922282376764	0.718233603321616	0.207902223252106	0.598730771894965
Merged-chr9-31009479-4	chr9	31008974	31009974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-21170.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	5.37919088316773	4.99566822004004	5.34354768603713	5.73741156362693	5.54929901988129	5.73927994786014	0.823263346133912	0.0185725791653351	0.153938357126128
Merged-chr10-71362009-4	chr10	71361508	71362508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14245.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	6.04695719639221	6.51539831911047	6.2746474715528	6.09357411604277	5.85434087043969	6.01546732876126	-0.525364920569355	0.0881436998995719	0.394039702425379
Merged-chr8-22165589-2	chr8	22165089	22166089	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 1 of 15)	B1_Mur1|SINE|Alu	846.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	3.6915243062018	3.83489500032101	3.55395752724775	3.7472941215764	3.45226616103072	3.62577801486376	-0.322902082796819	0.569516930657078	0.8688875602138
Merged-chr1-39736457-1	chr1	39735957	39736957	+	661.0	f0_balb.idr	Intergenic	Intergenic	-15468.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	4.75925117423399	4.86151454061073	4.56678098480567	4.4741386746413	4.22790855462913	4.82634183015558	-0.53279884023294	0.240694716259437	0.637751895088513
Merged-chr2-166688176-4	chr2	166687644	166688644	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	25688.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.34003769951735	5.02252249113639	4.92993360532779	5.838415584241	5.68068840565397	5.42492244344939	1.05954119482385	0.00408205039358487	0.0527585040617288
Merged-chr5-36792090-4	chr5	36791587	36792587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4667.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	4.61284750249083	4.68595074925678	4.86113370154679	4.58508529458681	4.08929745422506	4.82139415799574	-0.473130820145383	0.319917585572988	0.713801665327798
Merged-chr7-25685114-2	chr7	25684614	25685614	+	847.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	B1F1|SINE|Alu	-1888.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	4.07681237022946	4.02433792380188	4.77267100815608	4.08133850993908	4.0172919832036	4.56176623747607	-0.245545292072187	0.656783536837016	0.904693205515276
Merged-chr7-81852220-1	chr7	81851720	81852720	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	-6781.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	3.61856452567012	3.59943851198221	3.50180842767789	3.55461709805431	3.53895797723565	3.67942599206963	0.0363708396353243	0.948014564166544	0.988024000499268
Merged-chr12-111714445-1	chr12	111713945	111714945	+	921.0	f1_balb.idr	intron (NM_001163388, intron 1 of 5)	intron (NM_001163388, intron 1 of 5)	1176.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	2.54659459179719	2.37280073437675	2.59497116700943	2.20111432797075	2.42096673193355	2.66789734568981	-0.390817184014479	0.656496025729286	1
Merged-chr9-45486779-4	chr9	45486267	45487267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-55535.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	4.60022632411507	4.20029003963969	4.38305367411277	6.04169843477258	6.09815337436687	5.73425612661566	3.33257302860805	2.26832958963591e-15	6.67891686664273e-13
Merged-chr2-60865172-4	chr2	60864666	60865666	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	16272.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.8722845877134	5.72787764393461	5.45781360657088	5.65787829856832	5.74660030416911	4.88102901343873	-0.380165845058042	0.360013288046697	0.746287635071987
Merged-chr19-29047950-4	chr19	29047461	29048461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-59.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	5.95350670452306	6.00894576721133	5.96345512696802	6.25319862879541	5.88342250878917	5.92884932991485	0.097391655542709	0.748526705418079	0.937057639195805
Merged-chr4-147404698-3	chr4	147404209	147405209	+	844.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR11B|LTR|ERVK	-148568.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.97134897668624	4.29169533367616	3.97182280679552	3.85723974733944	4.04863449500962	4.31484859701803	-0.0363571703822392	0.943925731154949	0.987495247303971
Merged-chr11-75655924-4	chr11	75655411	75656411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-104.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	9.1838257251269	9.22715279717316	8.83597444620215	8.99682334154125	9.21752154484495	8.81840636607169	-0.0984581107422951	0.668776866253155	0.909385924601941
Merged-chr11-62549127-2	chr11	62548627	62549627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2044.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	5.68322606769694	5.80191344684735	5.66713327246934	5.30533752895434	5.6478669007189	5.41211775746612	-0.462203977426625	0.165939710892799	0.541089092560861
Merged-chr6-38966248-2	chr6	38965748	38966748	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	47262.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.5817857241705	5.07247713389142	5.28172555165446	5.55354635765768	5.30759473782283	5.24720260520628	0.0900224898709513	0.809188011908462	0.954721853010197
Merged-chr1-33908399-2	chr1	33907899	33908899	+	938.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310484)	promoter-TSS (NM_001310484)	174.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.16008313345117	5.76818330840198	5.79177065433959	5.88019213148695	5.5405913373914	5.27827471092064	-0.58884805630989	0.0995472832471622	0.420731832330245
Merged-chr2-129380956-4	chr2	129380461	129381461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9822.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	7.66948029761821	7.53304099354332	7.45838742547322	7.27739085268029	7.67711104820061	7.49482866684636	-0.089412163462005	0.71335400143216	0.925482720331284
Merged-chr11-70696981-2	chr11	70696481	70697481	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252485, intron 1 of 7)	intron (NM_001252485, intron 1 of 7)	3174.0	NM_001252482	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	3.24068831728561	3.21731839966359	3.30212523073001	3.43971974448416	3.38057682495972	3.37377340488436	0.587541033950382	0.327630877650456	0.719793584677403
Merged-chr1-161035791-5	chr1	161035319	161036319	+	934.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	903.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	6.90518744856402	7.30625146918422	6.91222683776456	7.06016489200297	7.09868564155958	6.88200602164878	-0.0611931007089032	0.817549432275026	0.956767881392089
Merged-chr2-77274699-2	chr2	77274199	77275199	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5893.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	2.60913679537402	2.77615333687629	2.57692649741513	2.72883977612397	2.49772640731941	2.83845899321206	0.169898720947673	0.827416273888348	1
Merged-chr10-26827669-4	chr10	26827164	26828164	+	951.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	55152.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.40108882963286	3.7062149687061	3.38048665357831	3.17799264522922	3.13590151775124	3.76008107606076	-0.447573752822395	0.506696946659687	0.838542828803423
Merged-chr9-118665664-4	chr9	118665166	118666166	+	987.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-46026.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.34223997016655	8.10979594800667	8.13261509444309	8.18077058547434	8.3530133042366	7.88613393422112	-0.0543516301158758	0.818226912752321	0.956886944398959
Merged-chr3-89774617-4	chr3	89774123	89775123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1014.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	7.34289043361478	7.41616740502579	7.14089593053779	7.61603590626167	7.96819295601303	7.33503381653978	0.535687307986075	0.0467040202729785	0.273399193149721
Merged-chr10-121508470-2	chr10	121507970	121508970	+	779.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-32220.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	3.00773078069182	3.11579485375633	3.10706506167616	2.81963867707542	3.08860186877527	2.94123971876385	-0.536329350623601	0.437978755346221	0.8003671068918
Merged-chr10-39435052-4	chr10	39434540	39435540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65241.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.87447139619358	5.79718960416184	5.6476155501842	5.78382653605768	5.55179644857093	5.91249106849245	-0.0661546000725839	0.836768493473051	0.962001762335242
Merged-chr8-33390347-3	chr8	33389843	33390843	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098233, intron 1 of 1)	intron (NM_001098233, intron 1 of 1)	4018.0	NM_001098233	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	2.69832262238628	2.62667775547972	2.49576753999665	2.94419566438221	2.83534034450578	2.83608477639434	1.38783547299071	0.0730237433765967	0.355092419106101
Merged-chr4-19853919-3	chr4	19853415	19854415	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35188.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	4.43872257858018	4.36394524006361	4.4848907876028	4.04588618114222	4.09830098478423	4.05943964172341	-0.981090308260037	0.0339222713959373	0.225339642209257
Merged-chr6-15463590-4	chr6	15463094	15464094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-257067.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.6171881127714	3.81391760102914	3.8267063690632	3.87418451842982	3.59924521642448	3.69046491913266	-0.0973481308064871	0.858317171929052	0.966883574654742
Merged-chr6-97306295-1	chr6	97305795	97306795	+	1000.0	f1_balb.idr	intron (NM_145148, intron 17 of 23)	intron (NM_145148, intron 17 of 23)	-53515.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.73539908714359	2.38966685746569	2.72782688840818	2.69092211678265	2.45617322549698	2.74056421655487	0.0332013776725761	0.967340117200474	1
Merged-chr18-34196069-4	chr18	34195563	34196563	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.41738534351966	3.71849253069719	3.71669745990273	3.72977060129428	3.69375814589472	4.06741360537638	0.694504914370325	0.221621791393017	0.616416165872113
Merged-chr12-21372032-1	chr12	21371532	21372532	+	819.0	f1_balb.idr	intron (NM_001291871, intron 1 of 18)	B1_Mur1|SINE|Alu	1600.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	5.38210581815873	5.49440414957744	5.39908942130754	5.91676815290638	6.18927793711192	5.75498976659012	1.00431056041594	0.00212987566330677	0.0323931080592999
Merged-chr14-45251813-4	chr14	45251302	45252302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 3 of 6)	Lx7|LINE|L1	32085.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	4.56537574818274	4.51424206988169	4.73681476404252	4.61014586711685	5.08665997188437	4.68478193815161	0.517376787859351	0.228144806753207	0.623147576440797
Merged-chr11-120714440-2	chr11	120713940	120714940	+	942.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	487.0	NM_153545	217366.0	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	3.29829879574238	3.16045554097783	3.23628053326778	2.9369811595066	2.91283871716212	3.07793683087904	-1.18819313156965	0.0749303264703916	0.360330729061339
Merged-chr9-7837067-4	chr9	7836577	7837577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291503)	promoter-TSS (NM_001291503)	-20.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	9.05791790605799	9.52981178805102	8.69838110810555	8.86051785447233	9.44029393142857	8.73817916599532	-0.121797677362926	0.687015597958529	0.916965854132552
Merged-chr17-10060279-2	chr17	10059779	10060779	+	711.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	259082.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	3.52505229295784	3.55273019965855	3.55774343853615	3.8073113244402	4.22126989889397	3.74273072658523	1.34907971147135	0.0168111576578988	0.143883241432623
Merged-chr7-27490840-4	chr7	27490338	27491338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018820)	TTS (NM_018820)	3885.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	6.44919735998253	6.59954321477537	6.71825440589372	6.63046542704201	6.6021727468121	6.58338435569485	0.0298741711261811	0.90901212125499	0.979384717565381
Merged-chr1-171221053-4	chr1	171220576	171221576	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-488.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	2.83879528515247	2.46230016955203	2.80555878150938	2.72089614334603	2.5878786905732	2.87847041701228	0.098004796032386	0.900929960627094	0.977039928959315
Merged-chr7-132813152-4	chr7	132812635	132813635	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	61.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	7.35466496431973	7.35062259602931	7.27100157639592	7.00857580757286	7.09098349627836	7.05795855784164	-0.41142301509589	0.0751168940618165	0.360915031822129
Merged-chr2-104816006-7	chr2	104815502	104816502	+	905.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123327, intron 1 of 11)	intron (NM_001123327, intron 1 of 11)	694.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	5.62593289832886	5.27307297281746	5.39830949490478	5.08132137779357	5.03694149742925	5.24583029726144	-0.656960195564497	0.0674179684903543	0.339619184277864
Merged-chr19-53855654-3	chr19	53855195	53856195	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-36536.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	5.04504795596287	5.26645177774093	5.27765825336969	5.20360813006597	5.3500281318494	4.83948146639917	-0.0698373851517078	0.856061663751975	0.966370627017695
Merged-chr7-126771822-2	chr7	126771322	126772322	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	B1_Mur4|SINE|Alu	-5153.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	5.13892413091926	5.16747954157432	5.37875950891106	3.89178895365199	3.86767041802994	4.16779501530646	-3.36814223478491	1.13458287372221e-11	1.80855118307812e-09
Merged-chr10-34127876-5	chr10	34127335	34128335	+	946.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175449, exon 1 of 2)	exon (NM_175449, exon 1 of 2)	137.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	8.45349469955618	8.66968596862235	8.50559390621217	8.1216229101769	8.56053063490512	8.11249715508296	-0.35759237433509	0.133603772816094	0.488819290786001
Merged-chr4-47316543-2	chr4	47316043	47317043	+	673.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36679.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.95498210091832	5.28887938176503	5.08320516209143	4.7430840025013	4.98323792469934	4.85934333451493	-0.534818882067085	0.169085792927214	0.545689142612633
Merged-chr10-75835556-4	chr10	75835068	75836068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010361)	promoter-TSS (NM_010361)	-687.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	7.49254937004793	7.61316650833494	7.25373876631874	7.28878941835901	7.29938457697816	7.05439252413105	-0.360147253263425	0.144697433563145	0.507545065842768
Merged-chr11-114679775-4	chr11	114679303	114680303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	4335.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	8.37546323917599	8.47145190444771	8.11940936018667	8.20817616642738	8.61578219690293	8.02748869404902	-0.0250961960544444	0.921672902966268	0.982542868764899
Merged-chr7-43663654-2	chr7	43663154	43664154	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-3493.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	5.56997235904959	5.49088087753738	5.71517403910589	5.75594520198916	5.88805752964909	5.99037680088696	0.529918327311717	0.0909434938230924	0.401337906869895
Merged-chr5-64341863-3	chr5	64341356	64342356	+	820.222229	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	L1ME4c|LINE|L1	111499.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.0962859340107	7.33053178609771	7.13320802455541	7.10923865206766	7.52908974965874	7.39836507243282	0.248615551060908	0.329223066534037	0.721157199685846
Merged-chr2-150668051-5	chr2	150667525	150668525	+	858.1866460000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080575, exon 1 of 14)	exon (NM_080575, exon 1 of 14)	215.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	5.52477368875499	5.35194746383066	5.34702299124917	4.92786850843913	4.72030478377994	4.90164954788174	-1.19362706347269	0.00114112722137614	0.0199696626991509
Merged-chr11-69125378-4	chr11	69124897	69125897	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-980.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	6.45699501920138	6.57178451759689	6.07217062192919	6.13688488457641	6.25798518033927	5.93704716869458	-0.446205130104639	0.146596658360137	0.510783248139954
Merged-chr2-118520122-4	chr2	118519599	118520599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24488.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.70084103288704	5.66956346879948	5.69867610801547	5.95513010401183	5.99401218038783	5.83889707588365	0.443597177600945	0.140699049204234	0.501168085881245
Merged-chr11-6391371-2	chr11	6390871	6391871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	3.80905363595399	3.64497292111807	3.6593521892201	3.61313220236417	3.74744140003591	3.83146740042568	0.075489539172349	0.888963553026615	0.974207858658472
Merged-chr11-89000805-6	chr11	89000292	89001292	+	856.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	1389.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	8.12565658479575	8.52001539329964	8.1707860038156	8.41573587350361	8.72568044180497	8.46535520684353	0.358674871939234	0.128671699122963	0.479799601167289
Merged-chr16-64836326-2	chr16	64835826	64836826	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	15397.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	3.0813603029065	2.96961757232493	3.47988114678288	3.02149756156518	3.19524534278411	3.18004817606112	-0.223206497808833	0.743873302510594	0.935814517574594
Merged-chr1-58722470-6	chr1	58721959	58722959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-8093.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	8.57097965080166	8.59217471846095	7.87231124605944	8.40857968121699	8.65554247321339	8.02761634124228	0.00292786271451315	0.992022222254613	0.998363319124397
Merged-chr3-86343673-3	chr3	86343160	86344160	+	639.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077687, intron 22 of 50)	Lx7|LINE|L1	118970.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	2.2184353550641	2.25512019164339	2.16947955412746	2.35691944552079	2.24281326531704	2.44033885682943	0.881001351218518	0.305491293109007	1
Merged-chr1-21079352-4	chr1	21078854	21079854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177409)	promoter-TSS (NM_177409)	-129.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	5.34217065395803	5.51120184278167	5.56628685768658	5.0130456672679	5.09363085732077	5.21971533736178	-0.735380393562838	0.0357907090333001	0.232527125814298
Merged-chr8-107056755-4	chr8	107056245	107057245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164472)	promoter-TSS (NM_001164472)	-8.0	NM_139229	97484.0	Mm.288641	NM_139229	ENSMUSG00000031916	Cog8	BB235941|C87832	component of oligomeric golgi complex 8	protein-coding	6.83192343000684	6.91386156535365	6.85751373063779	6.91924616266176	6.94019378306306	6.82664547893513	0.0478961059863204	0.843937913213541	0.963679834808661
Merged-chr10-8362301-4	chr10	8361805	8362805	+	912.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	156520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.52388793929301	3.40979888258173	3.25166410082914	3.50439493883932	3.28912923348708	3.49672427683345	0.0900742301055365	0.881971389486475	0.972996258525461
Merged-chr17-56997233-4	chr17	56996740	56997740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-99.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	5.22889036639862	4.96597557385732	5.14164637639016	5.2830199159803	5.15642637617733	4.74989550758786	-0.0458991426906059	0.907170370034626	0.978868492078838
Merged-chr19-40676736-2	chr19	40676236	40677236	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	16966.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.71269277906519	4.60036550626298	4.93189568548023	4.8819052931932	5.11563177727707	5.16173239372403	0.692813527590521	0.0788110858839354	0.370868463259694
Merged-chr18-60848228-3	chr18	60847750	60848750	+	605.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 1 of 24)	B1_Mus1|SINE|Alu	714.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	5.90555026498129	6.17740811259198	5.60978696156771	5.87393053540465	5.93867540038487	5.64388685094955	-0.173398179569459	0.604563898412934	0.88314896167691
Merged-chr4-155833384-3	chr4	155832882	155833882	+	648.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025338)	TTS (NM_025338)	2113.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	3.34256533795079	3.41505634397975	3.52613359770125	3.82629729192903	3.60294472269259	3.99153938698429	1.34803002211267	0.0198033382608125	0.160342872396482
Merged-chr2-11172339-4	chr2	11171836	11172836	+	984.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008859)	promoter-TSS (NM_008859)	-46.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.67724752038534	4.83252222086615	4.42178284320246	4.65770873917728	4.69288118028061	4.29681303366889	-0.219974009004165	0.624968771480102	0.892311037285785
Merged-chr15-34094494-2	chr15	34093994	34094994	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	B1_Mus1|SINE|Alu	11775.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.54215146877644	3.6015775530379	4.02510541746286	3.79259295777696	3.791933085751	4.13522272858105	0.569894183217475	0.313781639411339	0.708178980474631
Merged-chr1-152546420-2	chr1	152545920	152546920	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	intron (NM_016846, intron 8 of 17)	78797.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.87098823338964	3.85091716112811	4.01601104558865	4.02078484025367	4.10061750372405	4.1307137800561	0.525250580073525	0.284601831077321	0.682326259254607
Merged-chr8-22706123-4	chr8	22705621	22706621	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010546, exon 2 of 21)	exon (NM_010546, exon 2 of 21)	462.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	7.95372220712472	8.17389498092196	7.56775672924826	7.96597889957352	7.75398373278613	7.66385167961004	-0.183087646609243	0.479220816893069	0.824136196512039
Merged-chr10-63177447-4	chr10	63176941	63177941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	26511.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	6.99495514426549	6.66253191687612	6.82995357677809	7.0055711656471	6.74619757343228	6.84392904337077	0.0482311981341532	0.854704655610373	0.965987623019113
Merged-chr2-11218318-4	chr2	11217816	11218816	+	644.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	45934.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	2.79345679332545	2.71886401628083	3.05605340148463	2.80413488704025	2.82761628838534	2.71088803662211	-0.369857515375677	0.614362049494918	0.887435546271868
Merged-chr13-83524334-3	chr13	83523812	83524812	+	952.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	-431.0	NM_001347567	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	3.52367558239777	3.04629768835737	3.08616116885858	2.73458231976411	2.66404478303334	2.84610375788998	-2.58514373468247	0.00115704102517995	0.0201623182456908
Merged-chr8-126921039-4	chr8	126920530	126921530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24891.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	7.09310661486683	7.16625937201832	6.86288482736402	6.88101168872197	7.05149311223788	6.78216560380037	-0.208756857906572	0.415449092149661	0.78643843979409
Merged-chr10-118869233-5	chr10	118868781	118869781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-378.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.62433028373176	8.34803310152256	8.19334710578838	8.40944277407673	8.34682679517716	8.15314484004219	-0.132872945870814	0.564892493964897	0.866552670637515
Merged-chr13-92610056-4	chr13	92609488	92610488	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1150.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	4.96212596742563	5.05071009127833	5.07648371906664	5.13375627731844	5.11782965246678	4.84634100676965	0.0436459867583153	0.907081712456188	0.978868492078838
Merged-chr2-45100866-4	chr2	45100372	45101372	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	9405.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.96477057411195	7.26358749332591	6.96988394114887	6.92861575809425	7.15347261820791	6.91412477194117	-0.104566557921483	0.685011915252975	0.916088073421675
Merged-chr12-55492739-4	chr12	55492225	55493225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-78.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.36579422957875	8.22503673030771	8.1918876234621	8.3946043976944	8.64146574340646	8.22766535925514	0.243386905835245	0.279933844837246	0.677665988630793
Merged-chr15-102279500-4	chr15	102279031	102280031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	75.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	7.3797655673632	7.43002168881896	7.22847296116638	7.45718713013327	7.17657974039857	7.09635857030415	-0.144822620182371	0.556754892449503	0.8637300661975
Merged-chr17-27925769-4	chr17	27925278	27926278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	16472.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.65086180037555	4.13292680469184	4.10939247919241	4.67799730238994	4.3435755852484	4.18114650923251	0.229892002650122	0.65284153648668	0.903027303548785
Merged-chr9-40798611-3	chr9	40798209	40799209	+	843.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-2564.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.04106854686331	5.09555148113293	5.25838004094652	5.25092837422015	5.41458515319008	5.72792166798342	0.68343972467744	0.0600018740374368	0.317073284320274
Merged-chr13-54686564-2	chr13	54686064	54687064	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	1244.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	4.33155178219593	4.24577928454807	4.4762920756168	4.42064519119127	4.14341091765826	4.14334145151367	-0.282272258425859	0.543664418925978	0.857551302506722
Merged-chr1-87659423-4	chr1	87658913	87659913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	39101.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.93433344691362	7.04593490650252	7.11498351207963	7.02209096654365	7.17687422781882	6.76315030149051	-0.0314922123247672	0.902805079105645	0.977585531827525
Merged-chr2-11553063-4	chr2	11552548	11553548	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	881.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	7.5693120564438	7.98155620712923	7.66291011759542	7.67928999424029	7.69028548336734	7.14355024039818	-0.311903664531291	0.253746932386485	0.651117231535132
Merged-chr19-3882464-4	chr19	3881944	3882944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	22786.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	6.39007231651489	6.48753666096614	6.39234669907279	6.49376020330058	6.78043184272605	6.72589161371666	0.397649033363305	0.136910837924755	0.494310206464419
Merged-chr2-98663861-4	chr2	98663343	98664343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	1196186.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	6.21186809071662	7.67134565704281	5.39758684815515	6.77901474676042	6.58374157016953	6.07730273018983	-0.418634991696728	0.699915535185452	0.920753377048759
Merged-chr9-16237841-2	chr9	16237341	16238341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	140390.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	4.38560351702788	4.37410371693662	4.28236418782987	4.50277918631968	4.40898180931757	4.35075756676211	0.187519965656992	0.668842906110837	0.909385924601941
Merged-chr15-59531327-1	chr15	59530827	59531827	+	540.0	f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117327.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.13981431496112	3.78389041014135	3.74017255663418	3.67761727151357	3.54315133840297	3.64791430700016	-0.943898639115581	0.0897501328857464	0.398140910441818
Merged-chr7-141562822-2	chr7	141562322	141563322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	642.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	6.65098790914373	6.65524624482422	6.95974778980175	6.87865856585555	6.66401684481305	6.93777935541572	0.110519112493716	0.67857244447947	0.913498554171186
Merged-chr2-52979241-2	chr2	52978741	52979741	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	121373.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.5486671961107	3.67373264009787	3.50666196329689	3.52999021111945	3.2649881162948	3.1593234526265	-0.94511036484322	0.129025994035174	0.480371176632321
Merged-chr4-21847577-4	chr4	21847079	21848079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025669)	promoter-TSS (NM_025669)	-4.0	NM_025669	66625.0	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	7.68922418132411	8.1443348154972	7.62085526609479	7.65416089723836	8.02650407846243	7.49465942285359	-0.132898719119562	0.631832161347952	0.895284049434373
Merged-chr7-97171894-4	chr7	97171406	97172406	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90155.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.99656117986892	6.68322621436934	6.48526603887936	6.68183271762902	7.14213187471507	6.93524238210275	0.294543349372987	0.312927944476367	0.707557293586674
Merged-chr7-25283822-4	chr7	25283323	25284323	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	1644.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	4.93541854401772	4.98191411408449	5.20992703465833	5.29800403485973	5.12226258079149	5.36389623468133	0.455622224586653	0.212875915952239	0.605482203163822
Merged-chr10-19591897-4	chr10	19591399	19592399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010511)	promoter-TSS (NM_010511)	-50.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	8.10537665361727	8.25463180178794	8.10272757055263	7.9711937104368	8.12083428236021	7.99287164826057	-0.1774931033782	0.402030274695043	0.77787096574423
Merged-chr2-165388217-4	chr2	165387662	165388662	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178411)	promoter-TSS (NM_178411)	97.0	NM_178411	228876.0	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	2.98299290214596	2.69364303491829	2.53144614662246	2.86909741634128	2.55256940875441	3.1059552491065	0.552886906964976	0.511714958978775	0.841519675193282
Merged-chr15-43487487-2	chr15	43486987	43487987	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025736, intron 1 of 10)	RLTR13B1|LTR|ERVK	10258.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	2.63424383956634	2.69346228134284	2.70639721961733	2.74515857763045	2.79462969598754	2.89956597160666	0.719055876314899	0.322539360844725	0.715978413663286
Merged-chr16-32064126-4	chr16	32063647	32064647	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	LTR16E2|LTR|ERVL	15195.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	4.48308304986561	4.65704763495901	4.36898362949733	4.72727756548128	4.67538174463022	4.61387474875215	0.379580169217943	0.368803608044059	0.753638793969867
Merged-chr8-71668272-4	chr8	71667764	71668764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	3493.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	5.5380961579143	5.04583549745035	5.16070266278847	6.13096948837315	5.8856456344546	5.69955596685946	1.20672914867076	0.000875731429139573	0.0162615176870889
Merged-chr7-80846940-4	chr7	80846434	80847434	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31C_MM|LTR|ERVK	-15174.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	6.36197462031275	6.41433337925121	6.50971045086459	6.70251027992345	6.95828617082874	6.68739682987345	0.590520379098982	0.0258655923071883	0.190667476574426
Merged-chr2-39003962-2	chr2	39003462	39004462	+	823.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025592, intron 3 of 3)	intron (NM_025592, intron 3 of 3)	1169.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	6.00382924946462	5.91715300043774	5.53909827928632	5.74744635331871	5.82178683970698	5.26882490271256	-0.352995394009898	0.326310271683751	0.718645918705085
Merged-chr3-84655060-2	chr3	84654560	84655560	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11132.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.35466935322394	4.69370755467127	4.52032348405847	4.9199054364717	4.84925155003493	4.7532461582077	0.730222191068412	0.0802957650193327	0.374965206495505
Merged-chr3-84129376-4	chr3	84128931	84129931	+	849.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029797, intron 4 of 7)	intron (NM_029797, intron 4 of 7)	26355.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	3.32479177963136	3.52807812659591	3.60850036555637	3.37421134891882	3.25991576528618	3.57648774797967	-0.326246940299669	0.589029042905735	0.876739558209816
Merged-chr7-79821672-4	chr7	79821178	79822178	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008486)	TTS (NM_008486)	10951.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	3.05445272988935	3.03297757654444	3.21177402165573	3.21094612479295	2.94714734472804	2.99159827858981	-0.195308574997914	0.770407563261692	0.943392092118189
Merged-chr10-15215005-3	chr10	15214505	15215505	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	454716.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	3.77246264688033	3.94801400415176	3.69681110756125	3.58765781173888	3.33503726745084	3.43123416607352	-1.28638987674583	0.026234532076133	0.192325844537477
Merged-chr16-33954935-4	chr16	33954429	33955429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	12109.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.34804045445237	5.5291596244468	5.57136540748163	5.83624370725697	5.70650670099626	5.66139392135281	0.478393432514501	0.137024786046639	0.494589660876726
Merged-chr2-132234586-2	chr2	132234086	132235086	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	13202.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	3.06991740628602	3.20479149663389	3.31478401686496	3.32391788581034	3.43792564435587	3.27281827310567	0.634346538274757	0.309890060172702	0.705462734304293
Merged-chr14-25472706-4	chr14	25472224	25473224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	13539.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.77804692214012	7.8221561379899	7.34750308623677	7.41240237483076	7.66634277804524	7.01314827501039	-0.392779295346973	0.169577031039226	0.546439877378084
Merged-chr10-84147531-4	chr10	84147043	84148043	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46846.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.05222703466303	4.93191460639542	5.10204634855458	4.86523373321906	4.71887314804426	5.10072317107709	-0.295854957186946	0.445694672820191	0.805310684589312
Merged-chr13-78043430-4	chr13	78042923	78043923	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	18521.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	3.17613827664263	3.21201864034749	3.14633882583156	3.51228708092185	3.19506908632351	3.44829921638486	0.83873386893395	0.183381251278506	0.566491618839527
Merged-chr5-149235268-4	chr5	149234759	149235759	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-29745.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.19929251675942	5.53611562951051	5.51114471709087	5.2243643914018	5.03234929347366	5.21782933271816	-0.541535935149603	0.132586751908588	0.487291451095837
Merged-chr5-134678242-4	chr5	134677723	134678723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	25.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	6.18428137437783	6.40380389249491	6.5918515195838	6.05350718501683	6.00208525122494	6.24562188739059	-0.501456895074117	0.0889257857660386	0.396004109286622
Merged-chr2-30440829-2	chr2	30440329	30441329	+	972.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	24779.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	6.58324993916561	6.453939496672	6.52494979118163	6.64134024358242	6.77384744660635	6.61867472065122	0.260556132907847	0.31360712672106	0.708121563861612
Merged-chr14-77033516-4	chr14	77033009	77034009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172488, intron 4 of 7)	intron (NM_172488, intron 4 of 7)	3108.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	7.25607406202977	7.18357387316065	6.95441516865874	7.47249466480555	7.91538248335689	7.2665816461733	0.661236199706352	0.0175108663231056	0.147773241887725
Merged-chr11-55457689-2	chr11	55457189	55458189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	3519.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	3.60169225142082	3.73925726817317	3.76948346245907	3.48324839396302	3.33671393549626	3.63759208459066	-0.79091343772506	0.167657180888671	0.543689617009274
Merged-chr1-152608126-2	chr1	152607626	152608626	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	17091.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.79929083156019	5.65559430183953	5.39046723629316	6.23863028982866	5.87290139872762	5.86081746932679	0.654508692425951	0.0506439922943526	0.286665667403299
Merged-chr5-24165865-2	chr5	24165365	24166365	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153092, intron 1 of 6)	intron (NM_153092, intron 1 of 6)	902.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	6.26345667837279	6.32320790784444	5.78980081688849	6.86659032793224	6.97881669831276	6.38658123143796	0.994232650123955	0.0022602419489023	0.0339048516467031
Merged-chr13-54692022-2	chr13	54691522	54692522	+	746.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	1938.0	NR_027395	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	3.97348742081807	3.87696380962845	4.29242091784513	4.04131588730147	4.19806544247527	4.09432632124035	0.195571037110646	0.695536037728945	0.919289041383579
Merged-chr11-83658238-2	chr11	83657738	83658738	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4346.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	6.09168335293779	5.99847307558773	6.24003976279266	5.88171172778509	5.98941661774567	6.1398743603941	-0.180162122601105	0.541498462233419	0.856856498945272
Merged-chr2-45101985-2	chr2	45101485	45102485	+	821.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	8292.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.7545751183231	5.61253031102506	5.7854994057674	5.72421740161563	5.80815289927291	5.96414047506662	0.208733977854702	0.500936998251626	0.83533412964393
Merged-chr15-59752451-4	chr15	59751949	59752949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42510.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.4693799525923	4.42976705485713	4.24838095127055	4.3606825598666	4.3188259342577	4.17243241346347	-0.267114055270311	0.555320838222187	0.863191483122339
Merged-chr2-27414564-3	chr2	27414050	27415050	+	803.422241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	13058.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.25065114347678	5.14102119449182	5.29117776124519	5.5213162556977	5.13146347677814	5.12280999608217	0.0975243549248031	0.789842133950099	0.949311112850285
Merged-chr16-38701979-4	chr16	38701474	38702474	+	983.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11061.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.25801043460236	4.07144248592081	4.25267261553618	4.2806830768621	4.24392301566665	4.13451419257836	0.0861012770660875	0.853242499741605	0.965627960080552
Merged-chr2-151536863-4	chr2	151536380	151537380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5603.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	4.97705866447073	5.18511904548319	5.11297808809489	4.80179629782358	5.16013318143245	5.33191344422004	0.0359878337425556	0.92606707247266	0.983305773102619
Merged-chr11-68658123-2	chr11	68657623	68658623	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33792.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	3.74613466169547	3.65404230146415	4.00249655595334	3.74181906927627	3.92356017552941	4.02461536049197	0.313626790067136	0.556431700448174	0.863603167403937
Merged-chr11-29787614-4	chr11	29787101	29788101	+	945.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38067.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	6.5621251557019	6.79750999879323	6.67454712407933	6.82462521164561	6.92450935091951	6.79637649477063	0.266098312950441	0.2964165329126	0.693122171820648
Merged-chr16-18248877-4	chr16	18248373	18249373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	-10.0	NM_001357146	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	7.45396470800597	7.7856073863934	7.79745781058385	7.51241175006609	7.53437383386134	7.5226281891403	-0.236588813380477	0.313419051965925	0.708013587337261
Merged-chr10-111771525-4	chr10	111771023	111772023	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102853.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	3.94375948763308	3.35843580157794	3.60240782276733	3.85186155366592	3.41915825130843	3.25298171090632	-0.426946248979406	0.523026879655712	0.847930260153775
Merged-chr18-24653833-4	chr18	24653344	24654344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026779, exon 1 of 15)	5' UTR (NM_026779, exon 1 of 15)	153.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	6.75069578521019	7.17746071909521	6.89957780252293	6.45998399066002	6.65497921558601	6.4717843595408	-0.658285491783211	0.0168322543118724	0.143961560742192
Merged-chr10-128746521-2	chr10	128746021	128747021	+	738.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	3.25353364903986	3.1708626967409	3.79840941391733	3.41592690136478	3.40788959595103	3.30789577326875	-0.192034332780925	0.76898159454868	0.942983923980385
Merged-chr6-85370862-4	chr6	85370353	85371353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	3781.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	3.99367365003854	4.05258714556991	4.20067732222782	3.64861258663329	3.69590085025588	3.74676111461675	-1.22027836449232	0.0194979496716458	0.15874612488046
Merged-chr8-104641726-4	chr8	104641241	104642241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026753)	promoter-TSS (NM_026753)	-13.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	6.77528974776149	7.02202778133211	6.75319452163111	6.93111828222881	6.96693494658775	6.61069615857218	-0.00883938494983559	0.973654154908004	0.994039095662068
Merged-chr17-12754772-4	chr17	12754267	12755267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13456.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	7.62041394936616	7.89233462776113	7.40302756777989	7.80633877594493	7.95272981261421	7.53552614261988	0.174506586820552	0.499512163563467	0.834526991118793
Merged-chr12-85518408-4	chr12	85517911	85518911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44521.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.63463433673003	4.70745702656028	4.9820480582463	4.42669318623495	4.26027054837704	4.88121098792846	-0.572652258416448	0.212312287584316	0.604754238851012
Merged-chr2-102186381-4	chr2	102185872	102186872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290784)	promoter-TSS (NM_001290784)	88.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.925453448505	3.78381285242708	3.65323861166194	3.28425677823923	3.20617772673376	3.56345270169513	-1.67169246295849	0.0060399246739413	0.0701032294977413
Merged-chr7-128209903-4	chr7	128209406	128210406	+	940.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3540.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	3.80152348200995	3.4676312447194	3.75531498684051	3.90224467970388	3.8048493193742	3.92454427621487	0.63520675786305	0.243374908858181	0.640528523209625
Merged-chr3-7503454-4	chr3	7502939	7503939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	13.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	5.65493971305415	5.43602624184988	5.63636159836721	5.31786482472963	5.55671943772607	5.25096437642322	-0.347722850979166	0.311770050212506	0.706723622367304
Merged-chr6-124319722-4	chr6	124319230	124320230	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 10 of 16)	intron (NM_001170395, intron 10 of 16)	15079.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.40642972195635	4.44509237826436	4.68457398449161	4.05411256441761	4.19387098290684	4.52442893554396	-0.646539415341967	0.169019025430979	0.545635945763902
Merged-chr2-131222715-4	chr2	131222206	131223206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-11357.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	4.85333608700962	4.89078012430349	4.71431554845305	4.97249266972511	4.91639473995794	4.78099603038423	0.154449299751351	0.690525194911764	0.917905623653557
Merged-chr15-89075418-4	chr15	89074903	89075903	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355617)	promoter-TSS (NM_001355617)	451.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	7.61838878204239	7.8440447833267	7.6643142216243	7.66235750344098	7.83663888589086	7.61817616263626	-0.00102039664896408	0.99642535658673	0.999054827397229
Merged-chr7-141268610-4	chr7	141268136	141269136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028069)	TTS (NM_028069)	-2212.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	7.17864447042708	7.29718025897349	7.33619360797245	7.38098745497061	7.85475667680728	7.40442833211813	0.449078799965684	0.0810995907293962	0.376797604131958
Merged-chr7-120102368-4	chr7	120101862	120102862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145586)	promoter-TSS (NM_145586)	-64.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	3.73595337433127	3.59455415088769	3.85796823703283	3.65013325171686	3.7276638740496	3.72871500997578	-0.0825227341418655	0.878623084600386	0.971993214431016
Merged-chr10-94054485-1	chr10	94053985	94054985	+	795.0	f0_balb.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	18484.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.67481279517955	3.82190441095057	3.65113628149202	4.08110247858919	3.7317344400781	3.72320687513957	0.436021999501589	0.42558273627505	0.793186380294816
Merged-chr8-119836228-3	chr8	119835617	119836617	+	710.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	4462.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.3917280319595	2.90707169158383	3.25606481130331	3.26778328891127	3.26740989602788	3.09063540063775	0.0494515444104053	0.942474399448303	0.987202156853573
Merged-chr16-14362869-4	chr16	14362413	14363413	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	1355.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	5.00436203339784	4.95982819585247	4.83422404953568	5.06792707980555	5.08550577613437	4.9762552012221	0.230828397545758	0.534601551536258	0.853068627162717
Merged-chr1-24702554-3	chr1	24702119	24703119	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	23701.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.12657892699154	3.96279798370407	4.23026163514806	3.59034703650861	3.90501512308573	3.77808490102637	-1.03154949717492	0.0542489332699458	0.299079907288926
Merged-chr6-8337086-3	chr6	8336604	8337604	+	739.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	77816.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	5.019468514475	5.41336526750561	5.07707435436835	5.29106031445983	5.61959736118957	4.86854690684572	0.247550445220106	0.551700533873683	0.86140317538395
Merged-chr11-60211032-3	chr11	60210542	60211542	+	928.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-571.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	7.05894829373413	6.71288500828831	6.42494773703202	6.95169025720665	6.72658465384405	5.88239671850332	-0.246502977918649	0.51338343475552	0.842556387359711
Merged-chr3-107931828-4	chr3	107931330	107932330	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026672)	promoter-TSS (NM_026672)	-13.0	NM_026672	68312.0	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	3.3773015715373	3.11245575239159	3.69814897703203	3.18646978867228	3.08251441333639	3.42225528651923	-0.705222391499625	0.291692722553047	0.689198857889432
Merged-chr9-118763029-4	chr9	118762584	118763584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	51392.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.53224805101266	6.30130563258316	6.16130528640512	6.45215378382545	6.1702396639943	5.82687917062735	-0.27009300039964	0.39891322705714	0.775491025064514
Merged-chr17-47609384-4	chr17	47608877	47609877	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016859, intron 1 of 6)	L2|LINE|L2	2115.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	4.2885833676137	4.67017777138117	4.88497845883684	4.72701681132212	4.79540908610968	5.20154969777173	0.655333656954222	0.146359793233098	0.510321223405113
Merged-chr19-38010631-3	chr19	38010148	38011148	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32929.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.89431506721548	5.97129083635293	5.81904144310229	5.30964404066702	5.66867088679314	5.49943171032083	-0.714091580952255	0.0287487162936578	0.203239013199888
Merged-chr3-130715266-6	chr3	130714704	130715704	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5760.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	5.30795040767626	5.21944408497627	5.12512054018676	4.94906937129194	5.1597355684829	4.93685611084413	-0.405496703253806	0.269994342335951	0.667007509356262
Merged-chr1-10039744-4	chr1	10039238	10040238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026493, intron 1 of 29)	GC_rich|Low_complexity|Low_complexity	1520.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	6.06621387350807	5.80694457061677	6.07214047598278	5.99227096965295	5.95717777606877	6.06753124951775	0.0349378276474973	0.906653652725868	0.978787664113116
Merged-chr15-78901460-1	chr15	78900960	78901960	+	805.0	f1_c57bl6.idr	exon (NM_001316684, exon 3 of 18)	exon (NM_001316684, exon 3 of 18)	1692.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	4.07639401803033	3.95529734895065	4.42986496822931	3.9181519587396	4.04882636953159	4.56394812155154	0.107512213825816	0.841911904508237	0.963002495523594
Merged-chr6-28422393-2	chr6	28421893	28422893	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-669.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	6.67492352621807	6.98638706643566	7.17566347377191	7.02114501680537	7.08806660333994	6.95407811437173	0.108270987674641	0.683330382860808	0.915405060085363
Merged-chr11-106200957-2	chr11	106200457	106201457	+	753.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_026009, exon 13 of 13)	exon (NM_026009, exon 13 of 13)	-7354.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	5.54197513129696	5.80156082033113	5.85398273663465	5.742752104622	6.11283262045244	5.84194002962253	0.331770001735932	0.307447445532161	0.703580177816035
Merged-chr11-95842274-4	chr11	95841815	95842815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284397)	promoter-TSS (NM_001284397)	20.0	NM_001284393	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.30536070997648	6.998236709499	7.26739783187906	7.59155551286234	7.51222190780432	7.16716780786723	0.368597874882475	0.151813762264943	0.519559786042007
Merged-chr11-114885887-6	chr11	114885327	114886327	+	856.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4214.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.63352550744548	6.62787997747014	6.87748017551243	6.49702145685796	6.55692300890083	6.66994748268402	-0.218247126767021	0.406587641052308	0.780855477927353
Merged-chr6-94159443-4	chr6	94158923	94159923	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78019.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	5.99316369372685	6.33801763234503	5.60986792355884	4.69346385644805	5.06090957063546	4.78099556768034	-2.24894891859081	3.91917348758258e-08	3.10282195580182e-06
Merged-chr8-122415768-3	chr8	122415258	122416258	+	856.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 17 of 18)	B3|SINE|B2	-6262.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	3.60221269038076	3.48547936829645	3.9336879000755	3.73695547867126	3.5518547821236	3.49661507634535	-0.268335249316996	0.644702746926658	0.900287351502017
Merged-chr13-40917451-5	chr13	40916916	40917916	+	760.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133219)	promoter-TSS (NM_133219)	-218.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	2.80960669668446	2.92461812245389	2.61895059569905	2.78797070284947	2.763189019704	2.88487001595669	0.0731310998969307	0.921442704193666	0.982542868764899
Merged-chr7-45019530-2	chr7	45019030	45020030	+	674.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	60.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	4.24550044433998	3.86839175364313	4.14544966664979	4.09760060375091	3.75897928310281	4.57503218777847	0.237063037132492	0.671538318302992	0.910546279207362
Merged-chr4-147123042-2	chr4	147122542	147123542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-52824.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	3.84237703800313	4.27123054896182	3.66349865165935	3.55317887803136	4.02231630426648	3.89833971110351	-0.349506126824123	0.555850967885575	0.863444112605438
Merged-chr1-97661844-8	chr1	97661266	97662266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355072)	promoter-TSS (NM_001355072)	-90.0	NM_001355072	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	7.20188053572099	7.33345942383875	7.25823713585796	7.37633455711041	6.95326639840329	7.17310011013779	-0.13532666116277	0.590826100539	0.877301111216348
Merged-chr6-92940337-1	chr6	92939837	92940837	+	669.0	f0_balb.idr	promoter-TSS (NR_015530)	promoter-TSS (NR_015530)	-245.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.51703494268439	3.80812702310509	3.33156227210593	3.02212238542359	2.77381855496343	3.28827038704883	-2.36535045415669	0.00200620565636051	0.0310503829825138
Merged-chr15-99875495-4	chr15	99874986	99875986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113545)	promoter-TSS (NM_001113545)	-30.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	6.50456438954477	6.89986272105103	6.39417223628992	6.65799710924527	6.9151776738366	6.49305383660986	0.129173627085289	0.665485242466654	0.907854806295134
Merged-chr17-56035767-2	chr17	56035267	56036267	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357649, intron 1 of 10)	intron (NM_001357649, intron 1 of 10)	870.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	4.86118584100867	5.01268108085288	4.91090511304251	4.72694637475583	4.5791159222507	4.75140202783798	-0.571916504830997	0.145817952906836	0.509223056367729
Merged-chr14-75064801-4	chr14	75064306	75065306	+	812.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	48779.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.48651776673899	4.64717090918481	4.44034129806174	4.19636851993174	4.45335776245489	4.70636642747194	-0.175897780813792	0.697966327384204	0.920123929290929
Merged-chr8-14815262-4	chr8	14814746	14815746	+	920.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-73290.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.97991735329503	5.11663780371715	5.14856619682527	5.41940280108912	5.58321959734619	5.4340938774789	0.813829610205893	0.0187496920534074	0.154943328670168
Merged-chr4-122885032-4	chr4	122884481	122885481	+	821.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1095.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	7.11919656470461	7.35331260124962	7.17622650760207	7.56230367587886	7.61285415452893	7.50159319395131	0.499791420863077	0.0311059938642526	0.21350896151723
Merged-chr4-8843505-2	chr4	8843005	8844005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	92181.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.84874492339764	6.9491839641147	6.52343519703484	6.64430835839213	7.04422946399287	6.63689024199553	0.00756297174837278	0.979043527303491	0.995160277495735
Merged-chr5-107866603-4	chr5	107866112	107867112	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	HAL1|LINE|L1	8495.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	4.79178714952739	4.54543258045684	4.5072410364104	4.68140016096441	4.29262713203874	4.73539770453925	-0.123939003159727	0.781269864073025	0.946174647340264
Merged-chr8-106210076-3	chr8	106209602	106210602	+	699.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	831.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	5.54968143307909	5.87172784962915	5.91371341044552	5.64203059555964	5.69987722089901	5.80885556968704	-0.124074314707107	0.699909887736482	0.920753377048759
Merged-chr4-132010624-4	chr4	132010131	132011131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	38447.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.60926501537262	7.46843547460671	7.08592163771282	7.10897638966233	7.45094558074447	6.72908126351299	-0.399846443296686	0.186199571272671	0.57076050567163
Merged-chr18-53160375-4	chr18	53159879	53160879	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15913.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.1109872295694	4.17862355919112	4.50322196572019	4.50998979699769	4.44376242173953	4.60812381467099	0.661088927524881	0.145973093288105	0.50948528298308
Merged-chr15-31472989-4	chr15	31472468	31473468	+	947.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 20 of 25)	PB1D7|SINE|Alu	-19279.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	4.56832411518725	4.81187351740136	4.82316126343718	5.2239621732965	5.07637500463056	4.92719148585298	0.770258062505621	0.0492048328964627	0.281923795924367
Merged-chr2-102360749-3	chr2	102360250	102361250	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020267, intron 2 of 4)	intron (NM_020267, intron 2 of 4)	40150.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	3.7408789134015	4.00214795657964	3.85396178887931	3.88098988324688	3.54799933940963	4.01886302382219	-0.158503694257194	0.774181828476789	0.944321484608801
Merged-chr19-6076583-2	chr19	6076083	6077083	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081041, intron 1 of 9)	intron (NM_001081041, intron 1 of 9)	604.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	6.2875731592024	6.38626179136827	6.2335276277466	6.44394418361879	6.42270119868406	6.37380719370366	0.175406251371657	0.514087109862627	0.842928757124913
Merged-chr11-101642509-2	chr11	101642009	101643009	+	811.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14560.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	6.41519906398427	6.46662854780966	6.12015956415929	6.46007357615607	6.48569350899091	6.44794726741521	0.181286773928124	0.51322377966766	0.842416687973146
Merged-chr11-120784232-4	chr11	120783723	120784723	+	961.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	-19.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.73996793927375	5.53401388547083	5.7343163588641	5.83965793823568	5.19633135020305	5.08239891641102	-0.463013847733237	0.235322377425076	0.631536893333007
Merged-chr6-87509280-4	chr6	87508789	87509789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	L1M4c|LINE|L1	-12962.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.1574377004353	5.98539700763466	6.14793945436769	5.89921332002955	6.14466835685449	5.81026425689794	-0.214559676706741	0.479237004970073	0.824143175689519
Merged-chr5-66005019-4	chr5	66004509	66005509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027961)	promoter-TSS (NR_027961)	-724.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.34240685913815	4.12213018750042	3.97566806087979	3.9858467920594	4.25761496410266	4.23911032451413	0.0141195015821308	0.977171390151221	0.994771164142869
Merged-chr18-76238798-3	chr18	76238294	76239294	+	908.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2907.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.80014033299202	2.92559672833058	2.79220942832142	3.04273588460316	3.26605756761048	3.2302165084196	1.59884817754067	0.0235272900472118	0.179832344691729
Merged-chr11-54802428-4	chr11	54801915	54802915	+	984.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14712.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.64251448600624	6.46637346161363	6.0878729753075	6.54801378283644	6.54893137576883	6.3052811507082	0.0753446325841751	0.800699561570637	0.952671532106821
Merged-chr18-77065066-4	chr18	77064585	77065585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164167)	promoter-TSS (NM_001164167)	-123.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	6.42767933546961	6.49650757699377	6.430363324328	6.62971249025509	6.15230540068856	6.33755059518476	-0.109856354776252	0.703613295648357	0.922119521859599
Merged-chr2-11599126-2	chr2	11598626	11599626	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	B1_Mus2|SINE|Alu	4073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	6.35921717611549	6.61898159610338	6.65375294980125	6.93475398491544	6.94681690527664	6.5032844901821	0.431941062450217	0.126386679624231	0.475300963888672
Merged-chr14-50824316-4	chr14	50823773	50824773	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 55 of 55)	exon (NM_009351, exon 55 of 55)	16357.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	5.07257616252321	4.79541287350003	5.39300706669739	5.77328334749242	5.86626890018785	6.0644788103623	1.55249630618198	1.9763692601252e-05	0.000723810446287401
Merged-chr10-91080740-4	chr10	91080241	91081241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042558, intron 1 of 26)	intron (NM_001042558, intron 1 of 26)	2002.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	5.21679967416839	5.12376277186135	5.08242319579018	5.73243227014137	5.57106252993181	5.41637806448085	0.859774363768427	0.0126224797610346	0.118379489319461
Merged-chr19-46041915-3	chr19	46041457	46042457	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2336.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	4.47500951807714	4.38496337244739	4.44829757829864	4.63700114888278	4.14797765190835	4.51533740208697	0.0169836637157936	0.970535192317916	0.993498134685548
Merged-chr15-84183545-4	chr15	84183041	84184041	+	955.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8692.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	5.73284101500769	6.12871610792982	6.53386375427182	6.43404577245038	6.70132036119945	6.45630426472737	0.620794747056692	0.0614130846789982	0.321387418237112
Merged-chr1-20452614-1	chr1	20452114	20453114	+	757.0	f0_balb.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	96160.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	2.33742761870491	2.55599342110084	2.67644775697422	2.28270640174884	2.26988273940957	2.44347393443652	-1.26842814265886	0.138555683984063	1
Merged-chr3-106493984-1	chr3	106493484	106494484	+	553.0	f1_c57bl6.idr	intron (NM_001093754, intron 7 of 11)	intron (NM_001093754, intron 7 of 11)	7944.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	4.08904536418627	4.15376700987828	4.23014297323207	3.95589568919036	3.97769213623751	4.25377192447928	-0.27379375332615	0.572387041642224	0.869838344453715
Merged-chr8-84737819-4	chr8	84737335	84738335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	36378.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	4.67152510760927	4.5096189169286	4.47042370100144	4.60684019979914	4.39647440797237	4.15762192617777	-0.37475917452934	0.408595429381421	0.782165976211131
Merged-chr13-51325017-2	chr13	51324517	51325517	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83601.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	4.42946594251629	4.21167984881168	4.27261810732721	4.26988849915678	4.29215929243365	3.94146301553392	-0.328553109443099	0.49622548656647	0.83293489768267
Merged-chr17-45768018-3	chr17	45767560	45768560	+	715.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	33554.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	3.7547257351036	3.19017537912658	3.42843565401226	3.54377248001365	3.18717283541642	3.38680510859176	-0.383204735643329	0.557144728521531	0.864066550563251
Merged-chr17-21515881-4	chr17	21515393	21516393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19646.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	4.55141883090239	4.44201192459636	4.87694150217686	4.68281601881858	4.55062083769037	4.72623987194432	0.0622896035463618	0.884322909043512	0.973466734537782
Merged-chr6-125030677-4	chr6	125030126	125031126	+	919.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130997, intron 1 of 3)	intron (NR_130997, intron 1 of 3)	-9222.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	2.86468512842758	2.89225190790717	3.08277620770329	3.1973533846057	2.95109560872414	3.32031846971533	0.969844795538148	0.158535389460785	0.53032936746213
Merged-chr12-73342354-2	chr12	73341860	73342860	+	615.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 10 of 15)	intron (NM_001037717, intron 10 of 15)	55512.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	3.8864890039994	4.49334477702711	4.54551460848083	3.82737747887322	3.90318410053047	4.33850460444769	-0.834717473359838	0.13134798728224	0.484514932206438
Merged-chr16-35935937-3	chr16	35935443	35936443	+	776.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013371, intron 2 of 4)	RMER20C_Mm|LTR|ERVK	-2527.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	3.74124984592947	3.84990004353819	3.96303691058186	3.97083456487074	3.98822159742778	4.03151688888634	0.452807828444647	0.368253672710439	0.753265422302852
Merged-chr7-16842841-4	chr7	16842355	16843355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-47.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	5.98571412072005	5.61921152705939	6.0680545198584	6.22846327413128	6.02660312912925	6.55033238376496	0.646663394079423	0.0495032402295673	0.282877474652325
Merged-chr2-104693438-5	chr2	104692860	104693860	+	853.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 5 of 9)	intron (NM_177190, intron 5 of 9)	18802.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	4.26949362969145	4.14371467488079	4.21932152057312	3.98005020200825	3.70294264075677	4.24304919828014	-0.667988563538963	0.19498330716294	0.582701972575294
Merged-chr11-77801437-4	chr11	77800935	77801935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	137.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	5.92996231873746	6.10635718244457	6.46070547546427	6.06032737234532	6.26102743773253	5.90910911639241	-0.134026206610538	0.674980320673264	0.911927039724962
Merged-chr10-94829983-2	chr10	94829483	94830483	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114595.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.03714464194622	3.7606904406337	3.98731700968702	3.84729787265949	4.03283733842603	3.69326457764599	-0.173948135298562	0.74503262658977	0.936032341688524
Merged-chr6-83506967-4	chr6	83506447	83507447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162521)	promoter-TSS (NM_001162521)	22.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	7.91650104187057	7.77654739105741	7.85756556435384	7.70454703135808	7.79372330640851	7.69321590583764	-0.168546339499288	0.433756351415102	0.797967674446634
Merged-chr10-89599507-4	chr10	89599035	89600035	+	967.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182959, intron 3 of 11)	intron (NM_182959, intron 3 of 11)	280.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	2.80192602132569	3.22050295997247	2.90152085737659	3.19749502430258	3.12207467822299	3.10038824126387	0.651065534029338	0.359135669289436	0.745373904894685
Merged-chr2-129594883-4	chr2	129594515	129595515	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355160)	promoter-TSS (NM_001355160)	-447.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.60838596627978	8.65903501002339	8.52329052888948	8.66373549630068	9.04101026691522	8.70032051426374	0.300946179352548	0.169566947283994	0.546439877378084
Merged-chr4-109760746-2	chr4	109760246	109761246	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007983, intron 7 of 18)	intron (NM_007983, intron 7 of 18)	84119.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	4.32016745245113	4.2156491887559	4.08283957720602	4.62864607297457	4.5036641783681	4.10199756844372	0.585718052505179	0.224633953347552	0.619534040110808
Merged-chr18-70613581-3	chr18	70613084	70614084	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	45292.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	2.65061644203471	2.82379314913719	2.65880999667553	2.80607724566637	2.686475929728	2.97306821639936	0.550521588439121	0.459658008807528	0.813819730244683
Merged-chr8-117292380-2	chr8	117291880	117292880	+	968.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	35361.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.95249108450688	3.72497413830233	4.24698221805276	3.76785187298306	4.00709432521476	4.35301715385786	0.214940595897568	0.69743174159929	0.919959169598449
Merged-chr11-32536892-3	chr11	32536399	32537399	+	655.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	3633.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.4872292205117	6.27355137570737	6.44415449625547	6.47216011941484	6.08905761919027	6.14591253619927	-0.257606927985174	0.377181199712737	0.759616521190546
Merged-chr11-117198260-4	chr11	117197777	117198777	+	949.6979369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.76197575798814	5.51966905774278	5.55590568850359	6.00991298370452	5.70938493101552	5.59000149698512	0.303519025082054	0.360389479674314	0.746617778356579
Merged-chr5-140705855-2	chr5	140705355	140706355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276287, intron 1 of 13)	intron (NM_001276287, intron 1 of 13)	789.0	NM_001276287	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	5.20775518824156	5.2122136675396	5.84161089848582	5.24975808915486	5.24264427141688	5.27957364940475	-0.365087554524784	0.343485522362023	0.732367959280244
Merged-chr5-121249858-4	chr5	121249345	121250345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29626.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	6.68662807856349	6.15073208049528	6.35506249519271	6.62499710834706	6.68729473414989	6.50909748335494	0.309619311810187	0.291850962137222	0.689235268138963
Merged-chr7-142396760-4	chr7	142396281	142397281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8911.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	6.55438055611918	6.46755801798585	6.371749015948	6.80607919306303	6.91317963418309	6.71623269959945	0.550717088864718	0.0337148156171448	0.224463304358408
Merged-chr13-65279242-2	chr13	65278742	65279742	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178364, intron 1 of 7)	intron (NM_178364, intron 1 of 7)	388.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	5.41499455277421	5.2017110081637	5.48310879502238	5.15223859290093	5.13777749946808	5.00301372899692	-0.529561460168627	0.13945792684646	0.499084106249493
Merged-chr11-70844766-4	chr11	70844267	70845267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	6.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	7.12481187514832	6.78508952835012	6.95078370642823	6.96196114059554	6.5183712065962	6.67866974582615	-0.357087913278046	0.19891945791414	0.587343866831168
Merged-chr15-81857157-4	chr15	81856647	81857647	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	1179.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	6.4376992700625	6.43264812544407	6.55619103604023	6.82046422061903	6.89567367619809	6.92186752749559	0.643308831541226	0.010800774733623	0.106130239021647
Merged-chr6-87531198-3	chr6	87530721	87531721	+	720.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	MER5A|DNA|hAT-Charlie	2038.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.92009382629389	6.92125345012916	6.70380651243677	7.37330891481415	7.49022615132246	6.92236488736243	0.660347712313414	0.0156386796112068	0.136658606709651
Merged-chr5-139287295-4	chr5	139286803	139287803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33806.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	7.46072996152098	7.40233672400582	7.70972030165632	7.66131613350067	7.80989095347487	7.44170983709316	0.188455508262672	0.439562733125917	0.801216871474848
Merged-chr10-81542036-3	chr10	81541532	81542532	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	3014.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	4.39337920436781	4.84600886153068	4.89085975926806	4.55912660082683	4.54387576993278	5.05267421395582	0.0114972260328557	0.979941771383245	0.995416130723271
Merged-chr15-78259101-2	chr15	78258601	78259601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	14290.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.83041677816098	6.77789793693298	6.79634897608039	6.5261332149164	6.57332158328958	6.82543709622873	-0.254620390423937	0.324323612497633	0.717422983792312
Merged-chr2-157367685-4	chr2	157367194	157368194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	100.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	8.61592259371557	8.8808746005491	8.67056368222838	8.70480088714884	8.88807566587088	8.76784799923721	0.0843714537196513	0.685618759547908	0.916331487430729
Merged-chr3-107332131-2	chr3	107331631	107332631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	1158.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	5.50656838610514	5.62845868588337	5.46143004382398	5.49261528508841	5.54391145627926	5.4026284710877	-0.09950808800225	0.760910493046785	0.941046607439565
Merged-chr18-30444850-4	chr18	30444325	30445325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	171960.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	5.54832028280899	5.59975866003655	5.62077903018297	5.62603960058474	5.56670005644165	5.62864741474543	0.0313306830961604	0.920858683003463	0.982463724790289
Merged-chr5-100509443-4	chr5	100508940	100509940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8801.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	5.41747274102206	5.30356962613078	5.35872465085001	5.53289150660693	5.23486511776799	5.3604471517722	0.0344344268018023	0.920200903375553	0.982296874430043
Merged-chr15-5447752-2	chr15	5447252	5448252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-48566.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	5.3499740143748	4.84229998317137	4.37768823324436	5.31749437634248	4.78612290755533	4.39857754580202	-0.0491022968201179	0.956596228959789	0.989887454023164
Merged-chr8-72321495-3	chr8	72321001	72322001	+	860.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	2439.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.30284341940036	6.94039294029496	6.59394166347592	7.20544404568797	7.25055533819422	7.58020585249763	0.54293796509813	0.0667675434147194	0.337726063978843
Merged-chr18-58509801-2	chr18	58509301	58510301	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46439.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	3.2872550552239	3.25868588825924	3.22974411311696	3.35169831390453	3.3050525268155	3.41411559019343	0.378557882246759	0.530987196224685	0.851363932161699
Merged-chr5-90332153-3	chr5	90331647	90332647	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	B3|SINE|B2	34038.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	4.05793585697401	4.35196303847739	4.45236485822619	4.47703273481041	4.19209338462175	4.01057245556089	-0.128350076286092	0.795583230680323	0.951201802693417
Merged-chr6-34399345-4	chr6	34398851	34399851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13011.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	6.54021701595253	6.28792080494062	6.31901340231812	6.16748178980466	6.23640320926302	6.1289288627344	-0.34535473362766	0.218244285485467	0.612414823722149
Merged-chr10-95880335-8	chr10	95879850	95880850	+	904.2374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60313.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	6.69184192980224	6.77699125814701	6.16451550135746	6.34824292625098	6.3862936772822	5.72262005459923	-0.620120177252418	0.0753385751119303	0.361479192591022
Merged-chr2-77275282-4	chr2	77274780	77275780	+	969.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5312.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.42996326587595	3.53621299005124	3.19940119145634	3.44117769009204	3.34525978566531	3.61158796467152	0.231452810488135	0.706967457875859	0.923161381966479
Merged-chr9-35050767-1	chr9	35050267	35051267	+	1000.0	f0_balb.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	8.08779835299358	8.09676879417988	8.01012501998161	7.90331070153289	8.2918537526934	7.84530263046429	-0.0405657130212678	0.863717008971704	0.968269312109804
Merged-chr2-60877144-2	chr2	60876644	60877644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	4294.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.6671128163862	6.57763759038096	6.30886947457479	6.76818526582561	6.62940859863605	6.2627159120212	0.0716375031856533	0.807151742452706	0.954472851360829
Merged-chr7-75571156-3	chr7	75570650	75571650	+	688.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	115616.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	3.98518438538156	4.0172394675843	4.03935050647463	3.56287472713082	3.20539742936324	3.82409205597687	-1.59294785114537	0.00925353966727938	0.095375762248852
Merged-chr2-61139118-4	chr2	61138633	61139633	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163982.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	5.6547082534132	5.66810155933916	5.1721865951547	4.62828992666379	4.09411282390982	4.56630382472445	-2.44513703769222	3.60485787862916e-08	2.89250737092551e-06
Merged-chr7-75699997-4	chr7	75699471	75700471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-148367.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.39287045391394	6.4792362869893	6.02874747310965	6.09012128354554	6.34541768750088	6.46019053061112	-0.0357428251442008	0.905978445754623	0.978576016264467
Merged-chr17-56022373-5	chr17	56021861	56022861	+	585.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13160.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	4.01810898193119	3.55396959791851	4.25189898550077	3.81095608937259	3.36899801972987	3.72717317947805	-1.02706400848948	0.0937498619868776	0.407860426445891
Merged-chr7-133123382-4	chr7	133122829	133123829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009980, exon 1 of 11)	5' UTR (NM_009980, exon 1 of 11)	154.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	6.52413690746907	6.73199180805204	6.60766725917456	6.53907006986302	6.57495763520729	6.83573267495324	0.036529774336616	0.891328626641558	0.974795270136864
Merged-chr6-71224514-4	chr6	71224023	71225023	+	949.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160127, intron 6 of 9)	intron (NM_001160127, intron 6 of 9)	24644.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	5.18563802282776	5.09029576032738	5.03848710430427	5.0750438248651	5.23522769686666	4.8776027439219	-0.0532702136652762	0.886817948399144	0.973794308941933
Merged-chr17-25867916-4	chr17	25867413	25868413	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026633, intron 2 of 4)	intron (NM_026633, intron 2 of 4)	825.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	6.30420110341515	6.14067719173058	6.14189850552671	6.2919721271235	6.28866215867623	5.72431729240789	-0.0961061281461215	0.76242657314603	0.941561416958418
Merged-chr4-88439872-4	chr4	88439383	88440383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	-957.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.25960027550035	6.21759289694605	5.99377942440613	6.25446123433882	6.14218361927239	5.82574170656251	-0.124047576831903	0.683548841890494	0.915479407206029
Merged-chr14-27115259-1	chr14	27114759	27115759	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-28734.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.11079956196395	4.94674155658388	5.2628523893877	4.98817974597883	4.49451150596251	4.47370387867062	-0.954198408109788	0.0265396044664566	0.193639947432708
Merged-chr6-54126429-2	chr6	54125923	54126923	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	86491.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	2.87043197554296	3.01884661255173	2.91229232144002	2.96944696739565	2.74675082800641	2.98515868637563	-0.178982758487641	0.798798977968291	0.952063885260145
Merged-chr16-55790550-4	chr16	55790045	55791045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31593.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.07885462593338	4.58753154646729	4.96368880428112	5.02896932502755	4.75787767146961	5.31189076997155	0.324828854179217	0.447030158954372	0.806218121383605
Merged-chr17-35814982-4	chr17	35814364	35815364	+	894.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6849.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	5.05499499400829	4.9834880213769	5.47688534967766	5.07571737573605	5.41349482032981	5.31091109164332	0.205621180509464	0.591855832930753	0.87780418653262
Merged-chr9-57589963-4	chr9	57589444	57590444	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027895, intron 1 of 15)	intron (NM_027895, intron 1 of 15)	492.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	6.56683652249611	6.28666483776295	6.19365787947487	6.57295347285766	6.37944966975394	5.88979327039088	-0.0687209717431619	0.832085450338053	0.960599756045642
Merged-chr18-39635845-4	chr18	39635295	39636295	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137702.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.17355652270564	7.11054544366673	7.37219131233438	7.40486350343068	7.27805344138856	7.25190857376917	0.145401855298071	0.540785167867589	0.856546234535532
Merged-chr7-80832412-4	chr7	80831913	80832913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-29082.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.87409325460761	6.53332560857392	6.74722096940545	6.67609128906329	6.93121391793644	6.72755138382646	0.100480139570749	0.708624461162408	0.92375127577894
Merged-chr1-184622128-4	chr1	184621677	184622677	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64486.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.32756874739996	6.28069424274985	6.4483904607979	6.21441263100568	5.91726181144489	5.82149444402565	-0.590962766294929	0.0466988557280369	0.273397853419545
Merged-chr11-69667920-2	chr11	69667420	69668420	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 9 of 10)	intron (NM_001159375, intron 9 of 10)	-1750.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	4.5580430122139	4.50997924405195	5.11048323519823	4.67134645974986	4.72671973676603	5.28760146524826	0.38427145006938	0.410208531412124	0.783116615634315
Merged-chr16-4420517-4	chr16	4420015	4421015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291910)	promoter-TSS (NM_001291910)	-17.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	6.26727944479504	6.13425009245197	6.13570187074918	6.05011666034311	5.90558459239031	5.48531131611997	-0.576451017642042	0.072969554684884	0.354963086950727
Merged-chr2-129387686-4	chr2	129387193	129388193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16554.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	7.40861898144483	7.37794299758732	7.50634571267485	7.43451661540711	7.51559247832741	7.48354535176913	0.0743242949634475	0.738978200138328	0.934141013568152
Merged-chr16-4963515-2	chr16	4963015	4964015	+	983.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	722.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	6.40025530833173	6.40297692064364	5.99559156990991	6.28436510591308	6.17830795677893	6.41564733635477	-0.00501008131033842	0.98647459622953	0.997046485784555
Merged-chr16-36753251-3	chr16	36752755	36753755	+	953.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 19 of 21)	intron (NM_021301, intron 19 of 21)	31707.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	5.54237331494548	5.75549582964421	5.56001621135406	5.5935411182412	5.50121809046779	5.90072258597928	0.0681018367839629	0.838411605785691	0.962518552953479
Merged-chr7-4505896-2	chr7	4505396	4506396	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360154, intron 12 of 12)	GA-rich|Low_complexity|Low_complexity	-4216.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	4.64857033691535	3.71374613375738	4.76382237085661	4.74570743393675	3.9052821948722	4.8627556549841	0.275461266034372	0.791978434208821	0.949839887482488
Merged-chr17-17837976-1	chr17	17837476	17838476	+	1000.0	f0_c57.idr	intron (NM_001162909, intron 6 of 8)	intron (NM_001162909, intron 6 of 8)	7001.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	7.81531669400287	7.69647319897317	7.19037862415744	7.12345446097368	7.20330678030789	7.11864756515576	-0.669668502429779	0.011833886275517	0.113050976947557
Merged-chr3-86986590-3	chr3	86986052	86987052	+	748.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007640)	promoter-TSS (NM_007640)	-34.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	3.36071546268093	3.22221112113584	3.1918756819087	3.00158082420713	3.02748637849076	3.31949932249525	-0.622595768980689	0.342375145214243	0.731295592026562
Merged-chr1-57849320-3	chr1	57848823	57849823	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	MER5A|DNA|hAT-Charlie	3752.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	4.11641762489636	4.03317244855232	3.71291921916355	3.73936635142123	3.45390156514501	3.67459416197474	-1.19103768055956	0.0350579426086679	0.229801582525763
Merged-chr1-161517560-4	chr1	161517031	161518031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22874.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	6.34457972743018	6.0984331755109	5.79189588550036	6.07721988764857	6.17146785736121	5.8812693224869	-0.0901982270407304	0.777636223797614	0.945202525595529
Merged-chr5-8997235-4	chr5	8996727	8997727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023733)	promoter-TSS (NM_023733)	-81.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	5.70786378525327	5.86507056851537	5.79431156291294	5.65238470108255	5.66825850892151	5.4674762076851	-0.336639217817524	0.286570044475597	0.683823351325653
Merged-chr3-104637790-3	chr3	104637302	104638302	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-862.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	6.56192249261318	6.98921764356461	6.10334538788991	5.48803332758327	5.14241484967218	5.491729170131	-2.16790571106422	2.00443763181003e-09	2.09004068255199e-07
Merged-chr10-40140364-2	chr10	40139864	40140864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1890.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.71425600673639	7.04140425148893	6.81089146849376	6.68074937380654	7.04514748567425	6.95550460829605	0.0607237746437121	0.82194869414037	0.958041123079214
Merged-chr9-66126652-4	chr9	66126171	66127171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026635)	promoter-TSS (NM_026635)	60.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	6.75488562054581	6.8216540554252	6.94187060690103	7.15416542794314	7.25017821685444	7.04067753578005	0.489073408133611	0.0452553838558674	0.268483983896748
Merged-chr8-120685348-3	chr8	120684850	120685850	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17030.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	6.59733841788543	6.68007413354418	6.95558298976433	6.42591827534259	6.33900858835972	6.48587759284068	-0.530033664454019	0.0512115821743378	0.288465565228967
Merged-chr14-106972299-2	chr14	106971799	106972799	+	707.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-485779.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.2117920507138	2.14365069652389	2.34938319599885	2.0793482425937	2.10610141537805	2.23211808758037	-0.695901132559417	0.432583213455133	1
Merged-chr16-91383082-2	chr16	91382582	91383582	+	876.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	10299.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.00139125610054	7.81225410110123	7.74743354555466	8.04092919037452	8.1292441861276	7.56434424150615	0.117916260015327	0.64242435567391	0.899398873915991
Merged-chr17-35048560-4	chr17	35048043	35049043	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1700.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	5.78893743970196	5.82613644946916	5.86425842697603	6.0624283238929	6.22268327737822	6.19408570649261	0.587354131774699	0.0428783828111325	0.259572533790375
Merged-chr7-90042625-4	chr7	90042136	90043136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	13477.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.87437447554087	7.84604171375952	7.88912680496511	8.0823687662487	8.05667343954652	7.88944936607524	0.209291908606316	0.324197935063914	0.7173095907889
Merged-chr19-55552963-3	chr19	55552441	55553441	+	863.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	149263.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.14776774238295	5.34346996254022	5.28770823535219	5.0801886461179	4.93984428626099	5.28977416921637	-0.336268521668135	0.35768685156021	0.744246280500086
Merged-chr10-127555933-4	chr10	127555412	127556412	+	890.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 54 of 88)	intron (NM_008512, intron 54 of 88)	-21353.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.48685287257659	2.41800759912188	2.79097389845576	2.45120152867123	2.67672866280478	2.56141080276299	-0.00746579222970404	0.992659850454984	1
Merged-chr13-30764517-4	chr13	30764005	30765005	+	766.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	15272.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.03704737459024	3.86953870254323	4.05526995502489	3.82842426018551	3.5703400633399	4.16683618549096	-0.369288123584606	0.502308074858996	0.83643959840836
Merged-chr1-88284182-6	chr1	88283716	88284716	+	807.273804	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6637.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	4.40568940727796	4.45521974954118	4.28210027122823	4.29026500447133	3.90736485973534	4.55834469428853	-0.313253254805542	0.529103448419117	0.850769879725938
Merged-chr17-85393987-2	chr17	85393487	85394487	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 5 of 10)	intron (NM_028576, intron 5 of 10)	224409.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.80891048466585	3.07442225743901	3.11635591711512	2.96597034003231	2.98177391155918	3.18753484518964	0.182997494458648	0.790562349303882	0.949510125158813
Merged-chr14-101516763-4	chr14	101516249	101517249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	RMER19B|LTR|ERVK	92442.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.27613026372029	5.08890781788275	4.97120451276177	4.9520501757659	5.03964050237162	4.8448827194317	-0.360586418678043	0.340360846514246	0.730066645616554
Merged-chr16-5431881-4	chr16	5431368	5432368	+	953.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175912.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	3.3853651355828	3.36808659245582	3.55617632892319	3.14236735990933	2.92719914339274	3.13342737308234	-1.60351696865253	0.0151102067801968	0.133359575304798
Merged-chr19-34435429-4	chr19	34434928	34435928	+	961.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39707.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	4.67392307704121	4.96772092820994	4.46629320609599	4.53741915363087	4.27615166814091	4.24952724091655	-0.902715992164411	0.048181179953122	0.278290963594292
Merged-chr4-33246153-4	chr4	33245662	33246662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033225, exon 2 of 2)	exon (NM_001033225, exon 2 of 2)	2625.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	7.0951943987274	7.0978188799683	6.80779789584652	7.36445838363059	7.77542490923558	7.04702573785551	0.63965893516761	0.0272774943957826	0.196800984451944
Merged-chr4-53439111-4	chr4	53438619	53439619	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1294.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.58666059054818	4.59240223221848	4.89258937703246	4.86083735638021	4.87611539838533	4.84944216123211	0.405817193477426	0.310372229186191	0.705829393476587
Merged-chr18-36285075-5	chr18	36284680	36285680	+	772.608337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	4018.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	5.28308322882848	4.95541084378683	5.18560691993321	5.23487114501986	5.31332612729095	5.37405573637601	0.325090492947695	0.365488500581295	0.750624883533713
Merged-chr15-96757650-3	chr15	96757147	96758147	+	985.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57919.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.55867552323735	4.63610458058984	4.15857598328827	4.19963441552213	3.86022634301055	4.2287141650864	-1.02424136072902	0.0398242578694724	0.248272784056571
Merged-chr10-128372772-2	chr10	128372272	128373272	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2735.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	6.70758989044479	6.27858068733063	6.782790652643	6.3900489719009	6.9361820997496	6.79731926827144	0.203913326374036	0.509001928166146	0.84018602216273
Merged-chr15-64002129-4	chr15	64001627	64002627	+	970.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-4061.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.46719469870208	4.87774873538849	4.48700231639625	4.61054685578706	4.36515612071515	4.55463909883539	-0.302435622672968	0.497013785941166	0.833442633454308
Merged-chr10-117910629-4	chr10	117910128	117911128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-14831.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	7.74645080879844	7.47403137593503	6.78827013265387	7.52838320159555	7.73070864939687	6.94620249693256	0.0663095198521791	0.847907482621635	0.964318271116593
Merged-chr15-78305102-2	chr15	78304602	78305602	+	739.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	619.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	5.92361683297869	5.58219285860401	5.86287061237863	6.06462904327794	5.60869890185304	5.66567580534514	0.00274143347987021	0.9935399804052	0.998702045803685
Merged-chr2-92460606-3	chr2	92460115	92461115	+	773.476196	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145832)	promoter-TSS (NM_145832)	-97.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	3.94275540946316	4.01624593035413	4.20151082640237	3.73851823495221	3.97258029123833	3.85096703154002	-0.57859798912672	0.262022361699692	0.659917569838003
Merged-chr1-161033957-3	chr1	161033425	161034425	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153814)	promoter-TSS (NR_153814)	924.0	NM_001356489	240869.0	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	5.25944983813368	5.69058665365799	5.68298146345158	4.76074011481821	4.55909687879909	4.90676589818342	-1.72661499753534	1.11175815420953e-05	0.000438214933659246
Merged-chr1-44102502-4	chr1	44102014	44103014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029368)	promoter-TSS (NM_029368)	-73.0	NM_001356297	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	7.3816911485964	7.36534413881552	7.07692250598136	7.07629460753876	6.92585331384217	7.04173801756079	-0.416637884372104	0.0897897287976597	0.398295327529356
Merged-chr12-98281557-2	chr12	98281057	98282057	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	12922.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.89113854432469	3.79627555547618	3.80245509127929	4.02551040358775	3.979824856929	3.97424553247585	0.497959845982101	0.321374433495338	0.714837665357421
Merged-chr17-31994807-3	chr17	31994309	31995309	+	758.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	39699.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	4.81398199635681	4.4923130194548	4.67366984036565	4.64246582379157	4.45191612824646	4.88623313025129	-0.0144027272897243	0.973471275754303	0.994039095662068
Merged-chr11-76612815-4	chr11	76612366	76613366	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35127.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.9350744164577	5.63971615760231	5.22534408890046	5.63594165267176	5.78791698212225	5.49296257038152	0.0101428147944018	0.977952511462843	0.994994154947079
Merged-chr2-91729185-2	chr2	91728685	91729685	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-953.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	4.28010946414255	4.52833426143521	4.50762726860917	4.73116412436127	4.81222896560302	4.69733998949499	0.75072850510702	0.0738889091370921	0.357346605723869
Merged-chr9-110657801-4	chr9	110657313	110658313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	1310.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	7.06661526450492	7.10995298770103	7.00938457200573	7.24000450820769	7.90717700204072	7.42912477922584	0.744026894040812	0.00710345237518989	0.0789981375614542
Merged-chr5-139408698-4	chr5	139408200	139409200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	2313.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	7.31706035839484	7.54956454490832	7.37283468240479	7.15602109222529	7.42271834748188	7.33122755118438	-0.160659539974759	0.503282658077639	0.836940271271168
Merged-chr17-34391657-4	chr17	34391156	34392156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7164.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	3.19068858986184	2.71897658822663	3.15599529775298	3.43376922307649	3.46027632632656	3.34593931709952	1.58968796549209	0.0334599539350749	0.223338348069125
Merged-chr18-20645431-4	chr18	20644940	20645940	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	RMER5|LTR|ERV1	-19810.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	5.93635335615348	6.01070128968268	5.24598581221144	5.68931725144814	5.88530668605374	5.19944300037413	-0.272237247627451	0.505775016546328	0.838177729332582
Merged-chr15-12374441-2	chr15	12373941	12374941	+	613.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52945.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	2.72234606295961	2.70634284321065	2.89283423213743	2.50348015611875	2.7015553202425	2.60030904904164	-0.901503943799928	0.243788221129761	1
Merged-chr2-125594189-4	chr2	125593697	125594697	+	874.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081091, intron 13 of 27)	intron (NM_001081091, intron 13 of 27)	30916.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	3.02591530526522	2.83058641325453	3.00282724702851	2.7135950765934	2.77584659904446	2.95854134443563	-0.690052429984176	0.334795898428538	0.725198429760335
Merged-chr17-44781610-2	chr17	44781110	44782110	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	MTEa-int|LTR|ERVL-MaLR	4444.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	3.09071073277317	3.03797560191496	3.22024771362868	3.09994182383903	2.86696591772301	3.18020194170355	-0.294055773177633	0.661856344462754	0.906495637422278
Merged-chr11-80088670-2	chr11	80088170	80089170	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029856)	promoter-TSS (NM_001029856)	-730.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	5.37457871397789	5.35053022296716	5.35408907206908	5.35188937216266	5.6212122408814	5.44790222974533	0.243912953564181	0.468687977379411	0.818694631884688
Merged-chr9-62343632-3	chr9	62343113	62344113	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	2270.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	7.84368714922976	7.81454627652746	8.13355895631874	8.01356371524228	7.89011983182983	8.17003961458119	0.131384566956851	0.569509172716249	0.8688875602138
Merged-chr2-165985418-6	chr2	165984622	165985622	+	923.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7515.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.36667787065529	6.09432417683212	6.33969245369287	6.39337740007425	6.59023406646883	6.45539503534564	0.357273754305297	0.200334908854078	0.589297808036559
Merged-chr11-75651942-4	chr11	75651445	75652445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080774)	promoter-TSS (NM_001080774)	-205.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	8.45418265603205	8.48391229147776	8.04939598015373	8.09079837862027	8.48535250943866	8.1413329372714	-0.129859323744154	0.600019015792305	0.881421927970731
Merged-chr4-135495180-1	chr4	135494680	135495680	+	739.0	f0_balb.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-211.0	NM_001361484	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	6.74919119176253	6.68856239423079	6.48323056607002	6.72307665510072	7.13424725905877	6.82846030466354	0.410262703063807	0.134389338828492	0.490106421162394
Merged-chr2-150782037-2	chr2	150781537	150782537	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4759.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	5.08326710887416	4.94739004542483	5.13881892071858	4.95496454217185	4.9311078123887	5.43721344838319	0.127117197866882	0.745798576156067	0.936251303305737
Merged-chr9-118606639-4	chr9	118606126	118607126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133721)	promoter-TSS (NM_133721)	-83.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.02392649229342	6.44404146192133	6.84006824194843	6.81979794291404	6.24397901614741	6.53301384885435	-0.378555257491742	0.231810628416092	0.627983030091037
Merged-chr16-21631832-4	chr16	21631332	21632332	+	774.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	62833.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.7435656414853	5.77503386771085	6.41759231911937	5.7278841174053	5.70844144043496	6.28877128511846	-0.138324464128746	0.712923640300138	0.92531822516521
Merged-chr5-124553744-1	chr5	124553244	124554244	+	571.5	f1_c57bl6.idr	intron (NM_001190795, intron 1 of 13)	intron (NM_001190795, intron 1 of 13)	880.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	4.85359764824174	4.69057224286587	4.53587943836078	4.55615503493574	4.78971077319192	4.805329418775	0.0332290221706506	0.936250910744031	0.986037792257163
Merged-chr5-123694663-4	chr5	123694167	123695167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10306.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	6.53078092831679	6.77254729708031	6.41951350903286	6.34852456639604	6.55858121917101	6.21373899933013	-0.318568840357258	0.266878605098913	0.664366042575028
Merged-chr3-148917999-4	chr3	148917501	148918501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	36634.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.86069907842018	5.96088846328309	5.45849935823242	5.56364984283974	5.39908557830195	5.46020662894821	-0.587839195408672	0.0835159459508438	0.382519080921008
Merged-chr12-84180874-4	chr12	84180400	84181400	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	B4A|SINE|B4	13115.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.38956323821226	4.26062134037002	4.38291953651064	4.94637160399445	4.38537415643893	4.88332821319874	1.00390516851227	0.0286385534234537	0.20282209151917
Merged-chr10-39369676-4	chr10	39369162	39370162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-137.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.07477181518714	5.61635958342576	5.63427495431098	5.58954068428648	5.20710707908777	4.99557181574479	-0.949611637998539	0.0131879697658952	0.121954277426162
Merged-chr8-61561588-4	chr8	61561087	61562087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	29582.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.89560610921246	4.56704045592955	4.94449511318928	4.79115754165832	4.56657822122949	4.4104713635157	-0.475980124908472	0.27181080804573	0.669196488323493
Merged-chr3-40500617-4	chr3	40500098	40501098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	22314.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	4.85992308441738	4.68408432174742	5.32803684091078	5.51926465796946	5.24163673398061	5.55596352012018	0.960410893077853	0.0164848623906219	0.141995075548537
Merged-chr15-103318750-2	chr15	103318250	103319250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 3 of 7)	intron (NM_001356627, intron 3 of 7)	-8312.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	2.40228515801687	2.33186347588561	2.72098573554067	2.32662035606564	2.35165786542936	2.36446870294878	-0.894659594721254	0.290214330411082	1
Merged-chr13-20795563-2	chr13	20795080	20796080	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	MTC|LTR|ERVL-MaLR	1467.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.98674426739299	4.78640904133251	4.51154227465135	6.10012264977031	5.91761967692675	5.86152555717329	2.30390506916231	3.63625206338257e-09	3.65416982717315e-07
Merged-chr5-151368606-4	chr5	151368123	151369123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-52.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	6.9911877595519	7.26110869335659	7.32280153298814	7.41822893252652	7.42153065024534	7.42270599739651	0.335111526064323	0.161394972789131	0.534288955473963
Merged-chr13-38204869-4	chr13	38204370	38205370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026382)	promoter-TSS (NM_026382)	-69.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	5.5855030075616	5.78417737571534	5.63333277941123	5.43652483260877	5.16195949829277	5.2103881782118	-0.768265799721802	0.023640715701519	0.180302169760952
Merged-chr13-95325315-6	chr13	95324811	95325811	+	936.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028106, exon 1 of 2)	5' UTR (NM_028106, exon 1 of 2)	486.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	6.86570224089945	6.97510460905829	6.29426364743473	6.57484639407635	6.27877076305111	6.02812597174629	-0.696371337274056	0.0335786151115329	0.223843086540653
Merged-chr15-96564036-4	chr15	96563539	96564539	+	957.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	77923.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.09142879133706	2.80630981624734	2.92552838504527	2.84966058380986	2.81223139251317	3.11418513434011	-0.100502891549459	0.88780907265899	0.97389447111926
Merged-chr14-19977731-2	chr14	19977231	19978231	+	934.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285910)	promoter-TSS (NM_001285910)	-482.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	4.4309594142503	4.28111829534187	4.88933964842055	4.2704892216281	4.44322988477839	4.67754143830092	-0.197146549285964	0.679240163165669	0.913693374830142
Merged-chr2-181244117-4	chr2	181243617	181244617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2090.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	6.51445358421315	6.65096850597508	6.63044414671817	6.72491698561316	6.98049109954554	6.6561331014297	0.323820456048872	0.220770143796768	0.615425713593136
Merged-chr11-69754849-4	chr11	69754361	69755361	+	905.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	MER119|DNA|hAT-Charlie	3772.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	4.45309965877654	4.00198816206089	3.98374688636514	4.46798553874994	4.55259526187691	4.00169491009928	0.525241550341611	0.320507242140525	0.714329206729224
Merged-chr6-137825521-4	chr6	137825024	137826024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70947.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	5.96672109554136	5.96875601330153	5.73148742182623	5.84225969880366	5.76401763969523	5.65605341338847	-0.254060539039766	0.410126992861281	0.783116615634315
Merged-chr4-16162253-5	chr4	16161745	16162745	+	930.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	1398.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.02797499937803	5.09136689794593	4.9550461369596	5.32097467341801	5.42862971408823	5.35919511893085	0.696563410505081	0.0475992193626304	0.276380399927416
Merged-chr8-108715290-3	chr8	108714840	108715840	+	942.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	CpG	696.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.00445735075328	5.70259335728521	5.9546493233442	5.78610100914276	5.43182918999577	5.29425175391431	-0.666947523119752	0.0527057923879067	0.293760112235557
Merged-chr5-20936028-4	chr5	20935524	20936524	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-14965.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.62041934616252	4.91720014993584	4.68555112635445	4.96362377157089	5.1321497041718	4.94720951073897	0.596190838080626	0.131553858388536	0.484908897350639
Merged-chr2-11502115-4	chr2	11501650	11502650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177752)	promoter-TSS (NM_001177752)	-60.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	7.66533389030512	8.03126136942829	7.41679890058485	7.39302089484651	7.66168629604373	7.13198914447064	-0.455881656197534	0.108223092666798	0.439398218728357
Merged-chr1-36917377-2	chr1	36916803	36917803	+	638.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 1 of 40)	L2b|LINE|L2	22224.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	3.58082561072963	3.62498486024114	3.31339578299153	3.52659162773119	3.29517990376664	3.61104493339291	-0.153568159523896	0.799812923661589	0.952304300727399
Merged-chr11-83440467-4	chr11	83439965	83440965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172797)	TTS (NM_172797)	2771.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	3.72476420684669	3.92257527080383	3.33002199273156	3.67264663044966	3.38984517264717	3.52614062843923	-0.540456944336036	0.383687932793708	0.764948857386881
Merged-chr11-21564050-4	chr11	21563537	21564537	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 4 of 8)	intron (NM_001316675, intron 4 of 8)	7897.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	6.40669543901149	6.50755083587049	6.2132410579985	6.44985959685244	6.78323582340859	6.397371983338	0.28540296739262	0.322002456411926	0.715384462470548
Merged-chr18-4288007-4	chr18	4287492	4288492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64961.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.16456404499176	4.35527917357528	4.58442351072408	4.32732490869054	4.03066255038065	3.93549862598777	-0.70938053241748	0.154748933718089	0.523993298349518
Merged-chr4-72190859-2	chr4	72190359	72191359	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	10034.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	3.36025074193257	3.10557049732885	3.33248991371008	3.21892728330807	3.3369100781449	3.40328178117337	0.207468111522111	0.7390632734867	0.934159689508642
Merged-chr2-153143079-2	chr2	153142579	153143579	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	intron (NM_001172117, intron 10 of 12)	-18222.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	2.90723136496864	2.86482357790611	3.25951821769082	3.21773317956048	2.81472208220827	3.67506510361905	1.0755328627782	0.158253645564227	0.529983471790557
Merged-chr2-165403477-3	chr2	165402976	165403976	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102a|DNA|hAT-Charlie	-3082.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	5.03627454630702	5.31257374291579	5.54712815342337	5.09134802218782	4.72948896863133	4.97381755455741	-0.779816032075097	0.0487041618629042	0.280164251661841
Merged-chr2-167703086-2	chr2	167702586	167703586	+	621.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11909.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.28799043050156	4.41000385142826	4.60910159318238	4.20000137280145	4.23239332315765	4.21572463205505	-0.577362160364227	0.205781380053348	0.596447652812717
Merged-chr4-95417326-1	chr4	95416826	95417826	+	758.0	f0_c57.idr	Intergenic	Intergenic	-140181.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	4.53316032096922	4.68780580366417	4.59478184007348	4.64708480223204	4.49498590626175	4.25605165168859	-0.305402181514059	0.484653777600304	0.826994448591038
Merged-chr10-128343738-3	chr10	128343234	128344234	+	766.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	6007.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	5.08599215407057	5.04718604598304	5.3824162201933	5.36192527850203	5.57100654793805	5.68686799249165	0.740327731211558	0.0367519834680412	0.236052415315228
Merged-chr16-94519193-4	chr16	94518669	94519669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7460.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	7.01612992163804	6.96358367768389	6.72219960555997	6.71630160424823	6.82653196988261	6.57641023571639	-0.304129619972225	0.244212729118009	0.641448680970084
Merged-chr18-53747766-1	chr18	53747266	53748266	+	752.0	f1_balb.idr	Intergenic	Lx8|LINE|L1	-3219.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	2.88503244610232	2.57949269309026	2.82356016822472	2.43047045828289	2.44229000087489	2.45493082867781	-1.98894407790358	0.0179745679428519	1
Merged-chr16-85072415-2	chr16	85071922	85072922	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100211.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	7.14181590326625	7.34979316150821	7.13391482260188	7.05373313128342	7.41982203527243	7.08845360454238	-0.0130704175242298	0.959260818643208	0.990174309444982
Merged-chr15-31598307-2	chr15	31597807	31598807	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007637, intron 1 of 10)	intron (NM_007637, intron 1 of 10)	3232.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	2.89275187801709	3.0476465610349	2.74267023448142	2.79671863025546	2.71007131816177	2.99844875507271	-0.351984301916494	0.63237416392575	0.89551362251836
Merged-chr14-64809951-4	chr14	64809460	64810460	+	830.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139897.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	2.68229572922437	2.60764620935818	2.73783600961633	2.70101416085942	2.4721042239149	2.62440646229976	-0.424198443063634	0.579412062801981	1
Merged-chr5-110770202-2	chr5	110769702	110770702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152254)	promoter-TSS (NR_152254)	515.0	NM_029337	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	7.58154432197509	7.69013918249486	7.55433157486541	7.75984393625145	7.4718601748575	7.53198518091333	-0.0272870248695017	0.905744981357821	0.978476927785487
Merged-chr9-124079961-3	chr9	124079461	124080461	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22222.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	6.44872209355245	6.65684798084168	6.53210582724202	6.53268817034962	6.65154351938799	6.36777229552482	-0.0295301562394883	0.913099050382803	0.980541282138254
Merged-chr14-45307949-6	chr14	45307479	45308479	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 1 of 15)	B1_Mur3|SINE|Alu	10593.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	4.31717962556855	4.64066281319171	4.7048804052433	4.51022946381001	4.43017288923422	4.57712244835998	-0.141711380733437	0.746088359903021	0.9362730409135
Merged-chr6-65140598-2	chr6	65140098	65141098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	Lx8|LINE|L1	4132.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	5.73431451056544	5.57095600287139	5.58470908769198	5.32498848400158	5.59430800907843	5.67382720141864	-0.182055769693265	0.582843123188533	0.873826743013405
Merged-chr7-101546857-4	chr7	101546348	101547348	+	882.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	8954.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.11919234445805	6.17525544610045	5.8300066684173	5.65922826940375	5.55533354997826	5.86686578496495	-0.65916692559216	0.0368972689769059	0.236713954132168
Merged-chr1-156532953-4	chr1	156532391	156533391	+	745.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-25896.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.94509525743807	5.83967997686475	5.61955049931963	6.18388091734921	6.45113804452195	5.97968616696163	0.71245584330486	0.0250938816632386	0.187416902022687
Merged-chr1-190170720-4	chr1	190170232	190171232	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008937)	promoter-TSS (NM_008937)	95.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	4.34174485088024	4.19643013736707	4.23997192232491	3.80200826517227	3.47704566360915	3.93506242114767	-1.62425028954184	0.00262672463557158	0.0380449184324014
Merged-chr6-97508210-2	chr6	97507710	97508710	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20390.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.37513673298907	4.14952562170661	4.59025386932179	5.58474919064787	5.60032290267274	5.49269005451511	2.68825660846063	3.71996683601674e-11	5.40193718134871e-09
Merged-chr17-66078505-2	chr17	66078005	66079005	+	680.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001278415)	TTS (NM_001278415)	-1459.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	4.15773050710513	3.8701561868003	4.18136947523155	3.71306979088984	3.95197929092281	3.65180654338471	-0.870917667913614	0.109572863877784	0.442310137172788
Merged-chr5-143512460-1	chr5	143511960	143512960	+	557.0	f0_balb.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	15533.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	5.45913512184404	5.04823130368819	5.25084882385003	5.10343336143907	5.24387491627123	5.25072418635373	-0.128998659398968	0.724755682587163	0.929459725191008
Merged-chr13-34189688-1	chr13	34189188	34190188	+	557.0	f0_balb.idr	intron (NM_001033167, intron 10 of 10)	MTC|LTR|ERVL-MaLR	26724.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.23468694650957	5.40970709172931	5.64636126064895	5.57718360007599	5.6723919335674	5.42792077475965	0.268378128565554	0.434604990988327	0.798506050166648
Merged-chr4-116685635-4	chr4	116685208	116686208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040442, exon 2 of 3)	intron (NM_011034, intron 1 of 5)	109.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	8.19298221041038	8.29236890494396	8.06896486973367	8.03706963862175	8.17238581510667	8.19969929731756	-0.0764658433350565	0.719094607213774	0.92766367653205
Merged-chr9-89197637-4	chr9	89197146	89198146	+	934.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16B2|LTR|ERVL	-1627.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	5.12426733553288	5.08469476893812	4.78760552322863	5.12066314893867	5.18707629226958	4.97333815656511	0.179629357447181	0.63628987046686	0.8970753299382
Merged-chr12-32209122-3	chr12	32208630	32209630	+	869.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-481.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	6.35172899855832	6.28073505969	6.34984184302246	6.50269170187277	6.32869290190069	6.56991200325009	0.224182265620517	0.408502053385626	0.782131177848345
Merged-chr16-55895363-4	chr16	55894862	55895862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134457)	promoter-TSS (NM_001134457)	-83.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	4.67459407524377	4.52879766184176	4.4921831122882	4.60163383547076	4.3336129818071	4.3826427413818	-0.318518197952113	0.463211722639925	0.815705932518314
Merged-chr17-50190516-4	chr17	50190025	50191025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-28.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.61144194931618	6.44769111073947	6.11944243603834	6.82753203964823	6.28018543901458	6.11019709214688	0.0537285255332998	0.872658006049149	0.970261003150518
Merged-chr2-122348669-4	chr2	122348171	122349171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001099297)	TTS (NM_001099297)	20247.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	3.55950643354843	3.39533204341699	3.46524309222508	3.50496784089482	3.37062228545883	3.48122533104967	-0.0948420194320598	0.870283926465137	0.970065609722504
Merged-chr5-43131132-1	chr5	43130632	43131632	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-102331.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	1.95436281223286	2.0254051179806	2.21615039466692	1.94417464568152	1.86237484849869	1.82017997711954	-1.60217645141459	0.114233008112292	1
Merged-chr14-27405765-4	chr14	27405265	27406265	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	4.38932780834152	4.55309724866546	4.34257768351485	4.99828396687274	5.03470465655494	4.91508469639172	1.2791618505519	0.00184848524131141	0.0290589004267976
Merged-chr7-67260040-3	chr7	67259542	67260542	+	831.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 7 of 11)	intron (NM_001357324, intron 7 of 11)	37426.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.60684342933897	3.48975906735248	3.83846500136956	3.37479490842792	3.46026638951779	3.61448312024368	-0.582882924954767	0.316965491059071	0.71087206760042
Merged-chr2-31128034-3	chr2	31127489	31128489	+	767.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	RMER17C|LTR|ERVK	14019.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.24806364157056	5.25016300314918	5.56899068043024	5.25436530118963	5.23346549997843	5.79977430435401	0.171049728132925	0.652348839956184	0.902954729229878
Merged-chr7-126976121-4	chr7	126975607	126976607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362232)	promoter-TSS (NM_001362232)	193.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	7.76675175542959	7.80538108872625	7.77855666942379	7.90379867522229	7.86490171512334	7.8011196112552	0.107589149932369	0.610508258245236	0.885620138634407
Merged-chr15-58755292-4	chr15	58754788	58755788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68139.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.64504619622542	6.46306153159953	6.04553322172935	6.59178934403489	6.30088815531484	5.98189648881592	-0.156277707736684	0.636673269295958	0.897212708358297
Merged-chr10-81412803-2	chr10	81412303	81413303	+	666.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	3228.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.50349200319845	5.44511878516651	5.20477110292225	5.42547160481038	5.60193633983909	5.49271210746128	0.214844324923986	0.526800751227868	0.849687525994762
Merged-chr9-108650498-2	chr9	108649998	108650998	+	648.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357285, intron 1 of 15)	B3|SINE|B2	-1090.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	7.06721172844009	7.2973652828727	6.79578880422732	6.75042497026774	7.11101442357471	6.70760502363661	-0.303039239708865	0.286745384167781	0.684006362187739
Merged-chr5-43236192-4	chr5	43235692	43236692	+	810.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	-838.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	4.78747531556511	4.98151685437923	4.35166300086097	4.84782479747447	4.8379389414961	4.96832259632406	0.303387628881093	0.486811951732589	0.827985697457807
Merged-chr10-34138238-4	chr10	34137735	34138735	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-10263.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	5.8645841377921	5.75905462020765	5.58265382006597	5.64116422096072	5.40732099204393	5.52982340837489	-0.416750748683776	0.200372997949317	0.589326514204756
Merged-chr11-46820082-4	chr11	46819591	46820591	+	978.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	9292.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.55466012130591	6.40458234333499	6.55694322445994	6.36431709790669	6.3015603905238	6.15391309759402	-0.364210522670905	0.18161319059091	0.564057719483724
Merged-chr11-49848583-4	chr11	49848079	49849079	+	956.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	1828.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	5.73566270911948	6.08060712119341	6.28703668341972	6.47137159679923	6.67145796266876	6.80546180028923	1.00278511810934	0.00101758590178409	0.0182599283406622
Merged-chr17-56134719-4	chr17	56134203	56135203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-851.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	6.38906053023938	6.42416168083681	6.73764019661436	6.45317755677518	6.6303332460196	6.35347110312087	-0.0386821301846235	0.890852529102607	0.974581703799143
Merged-chr12-64917819-4	chr12	64917333	64918333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-78.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	4.94079149736703	4.21582986307671	4.41507475898561	4.50516976151927	4.07533708272729	4.15010215908967	-0.786173826057276	0.128405577663541	0.479277664179651
Merged-chr1-191186659-3	chr1	191186123	191187123	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3290.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	4.76993687031076	4.68605923623792	4.38446176768027	4.74179305042356	4.45993685550367	4.62942461581783	-0.0548417287397936	0.899404128427724	0.97662115673637
Merged-chr12-3436676-2	chr12	3436176	3437176	+	895.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	L1VL4|LINE|L1	9819.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	3.21824566744234	3.62540786675327	3.66519232498553	3.55682227869944	3.71503801372864	3.7347216073114	0.541689523091308	0.366834122611157	0.751897609642077
Merged-chr9-20976832-4	chr9	20976318	20977318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-25.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	7.15580060566101	7.34156292776004	7.01249705559013	7.24861675163289	7.35170602618498	6.78238683364768	-0.0301658024881088	0.913104801523035	0.980541282138254
Merged-chr17-69204010-4	chr17	69203511	69204511	+	887.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	44655.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.26622290377263	5.42380674493224	5.46839940853009	5.21161659209087	5.3012764912929	5.15754187685163	-0.306913288441108	0.375391590611707	0.758646622209238
Merged-chr2-83721236-2	chr2	83720736	83721736	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3161.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.39076126841545	3.79742464501982	3.9722757197234	3.58491613049755	3.66335828192397	4.03954483557865	0.109451335238305	0.855448259165529	0.966221950601062
Merged-chr3-142494570-2	chr3	142494070	142495070	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2364.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	4.62325638810094	4.29980563298236	4.71915364253653	4.9508713955669	4.84250431632452	4.96623969263764	0.85382700109429	0.040792025970533	0.251950980898106
Merged-chr6-92199629-4	chr6	92199121	92200121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 7 of 11)	intron (NM_030081, intron 7 of 11)	15190.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	3.22781658331728	3.02985182758724	3.24920443285193	3.13924007862799	3.21882388797104	3.26441984163023	0.161483891571916	0.799782902043912	0.952282181836353
Merged-chr5-100635902-4	chr5	100635420	100636420	+	798.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38336.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.92378882736508	5.62842582934698	5.96434387525682	6.1859449559172	6.14667472730703	5.85535890090972	0.415958484765695	0.184447046218291	0.568167187813126
Merged-chr9-121719041-4	chr9	121718544	121719544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-137.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	8.99520606032502	9.14697112598331	8.62886808132777	8.66993993672161	9.07170756748257	8.57862172029046	-0.203634762408602	0.421316762956651	0.790226764066497
Merged-chr6-114645949-2	chr6	114645449	114646449	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028835, intron 1 of 18)	ID_B1|SINE|B4	2852.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.0941249148672	4.41518457570548	4.28928460996671	4.11634158275362	3.85970067225004	4.39812325229621	-0.392766429039389	0.43800495841055	0.8003671068918
Merged-chr6-34621087-2	chr6	34620607	34621607	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	HAL1|LINE|L1	22603.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.5133553370171	5.20681147778905	5.43572692303558	5.13493922350222	5.00835710422587	5.15830740129156	-0.594819105109707	0.096736901049148	0.41464408281404
Merged-chr16-24426410-4	chr16	24425902	24426902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-21689.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.67140104183817	4.50725873378465	4.31924595555106	4.81900473078525	4.76076244591893	4.43742804239879	0.420082842754024	0.341160184876021	0.730686899066382
Merged-chr8-46890466-4	chr8	46889965	46890965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96422.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.63941501829392	7.65802484559508	7.39797761085159	7.5473674569241	7.89107459950782	7.79012804861034	0.255659623732947	0.284495262076311	0.682238657188254
Merged-chr14-27380969-3	chr14	27380438	27381438	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 4 of 10)	L1ME4b|LINE|L1	19549.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.48552797865271	7.52563241998913	7.02359374153687	7.72916925581319	7.77018793195769	7.16513793593588	0.320003449822428	0.267988453082198	0.665158787855372
Merged-chr11-78019883-2	chr11	78019383	78020383	+	824.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 7 of 14)	intron (NM_174852, intron 7 of 14)	-12430.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	2.2775623052906	2.3099472376071	2.51539527867791	2.33583616159226	2.14334726221722	2.27057846063856	-0.797461022093896	0.357018276877996	1
Merged-chr5-65951335-2	chr5	65950835	65951835	+	771.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15789.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	2.30472798952828	2.20342901648796	2.55810109559525	2.12263369212246	2.33782336856974	2.26169949698438	-0.771476630000255	0.391345766180193	1
Merged-chr3-58508520-4	chr3	58508014	58509014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-17307.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	5.16754833785118	5.10417144785889	5.38530593261295	5.29050445958036	5.18150064029939	5.38986159948012	0.137862533096036	0.697604616903951	0.920011490392658
Merged-chr1-13291759-3	chr1	13291202	13292202	+	867.6555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	80727.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.12341490054	3.31488853690778	3.19860041063889	2.95752832496286	3.19371779645226	2.96919974702034	-0.710467186548941	0.29431528499522	0.691009769579071
Merged-chr11-118275929-2	chr11	118275429	118276429	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	14315.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	4.39101713366163	4.24541990786414	4.51027498360336	4.40808487484502	4.00862327269889	3.81126337442394	-0.75253983201157	0.146166437718151	0.509946203339702
Merged-chr3-98050855-3	chr3	98050355	98051355	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	37317.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.99515873725336	3.73449964320145	4.16156423090221	3.69356750389837	4.08075605735315	3.69141976526398	-0.378238561549607	0.501266026319343	0.835523069455156
Merged-chr9-123924247-4	chr9	123923758	123924758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44434.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	9.08326639418028	8.9513258502934	8.87425090791149	9.02771265180443	9.25756096522401	8.80502423411026	0.101869550639443	0.64497453381347	0.900384153905866
Merged-chr14-79587465-7	chr14	79586991	79587991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026474)	promoter-TSS (NM_026474)	-169.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	8.22278035264066	8.7368976052081	8.32938816565255	8.449951250356	8.57596087458672	7.98833674914221	-0.11731063992254	0.661807557417388	0.906495637422278
Merged-chr7-134692649-4	chr7	134692142	134693142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	ORR1D1|LTR|ERVL-MaLR	21955.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.6174804084481	5.29302342171151	5.55084307368096	5.5512980486266	5.35412716409778	5.71778353297538	0.0895923435793414	0.795851142175392	0.951371747236301
Merged-chr8-88636120-4	chr8	88635609	88636609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027840)	promoter-TSS (NM_027840)	19.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	6.77765136799525	6.61973961468091	6.79699472021278	7.43764512474448	7.71633194558742	7.16393480327855	1.11510758167372	2.7523271204917e-05	0.000957823651367099
Merged-chr4-116464811-4	chr4	116464311	116465311	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-630.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	4.46658810995422	4.19351454170225	4.7072836725281	4.25686139517951	4.26730034870273	4.62631581477714	-0.197820285900909	0.677290114425575	0.912780094930811
Merged-chr7-28339784-1	chr7	28339284	28340284	+	1000.0	f0_balb.idr	Intergenic	B3|SINE|B2	-1065.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	6.84820939135611	6.70217063776183	6.68199123016111	6.72373579166949	7.02471224478179	6.96388413545644	0.253528713860962	0.326178608584334	0.718556399216867
Merged-chr12-108759969-2	chr12	108759469	108760469	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-33342.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	3.02960325198204	3.23172375294861	3.61792509679319	3.15755276733869	3.32328980674291	3.27420088270419	-0.217687011037816	0.744723810902741	0.936032341688524
Merged-chr10-67031391-4	chr10	67030900	67031900	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	26325.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.8359964285808	4.41474536069815	4.13964856651618	4.45496221628988	4.35313164775986	4.15919210511987	-0.439642447643519	0.377218189239888	0.759626672962717
Merged-chr3-89731179-4	chr3	89730679	89731679	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146296, intron 1 of 14)	intron (NM_001146296, intron 1 of 14)	461.0	NM_019655	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	7.54271264982777	7.76676687471514	7.52553202140932	7.67861011572622	8.05762411921478	7.56218502243381	0.250539927111583	0.322610586815173	0.715997472916187
Merged-chr10-84576958-3	chr10	84576456	84577456	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	9.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	8.05784298473726	8.69270025294218	8.02402504207355	8.4162772372001	8.64966882870711	7.9529778257721	0.103346729217237	0.729299721160938	0.930601789377265
Merged-chr15-57894482-2	chr15	57893982	57894982	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2064.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	2.97058749202384	3.18282252128332	3.09098899057344	3.14017706578513	3.26130033724024	3.16342104487385	0.460788930875449	0.478458562228555	0.823834402333981
Merged-chr12-69532742-1	chr12	69532242	69533242	+	739.0	f0_c57.idr	Intergenic	Intergenic	50286.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	2.24629674889852	2.3302327947864	2.35504812555182	2.6462449067043	2.29004616652672	2.62358913213591	1.3676120470732	0.110566214891338	1
Merged-chr3-27453837-6	chr3	27453380	27454380	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 22 of 26)	B3|SINE|B2	82529.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	4.29430520137136	4.76839850786769	4.52121877656287	4.07724470573259	4.04932358379438	4.09402397194434	-1.27536927562546	0.00767585166378132	0.0835281793853729
Merged-chr9-111056126-4	chr9	111055628	111056628	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1116.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	6.34074690293792	6.0349160504971	5.69626614141131	5.91127585501595	5.53899403138771	5.31347903534852	-0.784338868417793	0.0330427043921525	0.221627260953432
Merged-chr10-7474431-4	chr10	7473934	7474934	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-957.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	5.67537533571434	5.39720285293799	5.49766563418271	5.62333590198574	5.80235107906251	5.1244378131836	0.0642862593668933	0.862881845410936	0.968145160359081
Merged-chr5-139253466-3	chr5	139252953	139253953	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	-44.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	5.14956733888303	5.27415769626351	5.31077605268897	5.28332215568669	5.37698157988132	5.28006391387416	0.150601783350154	0.661729247383255	0.906495637422278
Merged-chr15-53196012-1	chr15	53195512	53196512	+	691.0	f0_balb.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	150171.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.15906825750864	3.88173451116243	3.85544323306876	3.47680364171596	3.39591383948725	3.87579918977602	-1.29173885121978	0.0265933305277599	0.193933203028382
Merged-chr14-66225232-6	chr14	66224748	66225748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-11424.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	7.07056884741056	6.98849372067427	6.62894709949261	6.76265063142384	6.91961186858241	7.06008294371494	-0.00623278778543581	0.981575219138355	0.99571978194797
Merged-chr7-25248484-6	chr7	25247981	25248981	+	970.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2277.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	4.80118791707916	4.66957749683663	4.86814833129176	4.92784874401972	4.85595108718545	5.00348839695475	0.334006274034933	0.38778959064521	0.767721672469137
Merged-chr3-106484142-3	chr3	106483638	106484638	+	962.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1688.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	7.08667425243736	7.20685822476313	7.10700826940775	7.28738011884513	7.22658463421173	6.82298858707284	0.00371166473005365	0.988522421456452	0.997426973334006
Merged-chr19-5602535-2	chr19	5601990	5602990	+	643.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_037603)	TTS (NR_037603)	617.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	5.15900592857826	5.36522455328247	5.32190890465182	5.55239039480902	5.45832033997243	6.01222020236633	0.764555499306815	0.034605304568705	0.228038186628083
Merged-chr17-17064526-2	chr17	17064026	17065026	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163919, intron 1 of 4)	L1_Mus3|LINE|L1	423.0	NM_001163919	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	3.75435626078664	4.0573008019911	3.73965185066233	4.01794491880493	3.86660287165938	3.96614800785792	0.253867136841509	0.628767694135955	0.893895577769845
Merged-chr4-129380039-2	chr4	129379539	129380539	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2011.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	3.57037713930998	3.84234997267991	3.99503296803141	3.79432728419004	3.35805754299075	3.72811458685636	-0.577951472461676	0.327243967295701	0.719396012109034
Merged-chr7-67451573-4	chr7	67451024	67452024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78666.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.13183606312377	6.12796600196409	6.35812250142982	6.17246715069574	6.50584988086756	6.66861709375933	0.425740384577001	0.150962999040722	0.5182047532504
Merged-chr19-41381885-4	chr19	41381404	41382404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	3166.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.51114027669616	8.29175530398975	8.09040869707854	8.67852004788045	8.6078940566115	8.32172645013941	0.326073409290718	0.165232638171385	0.54001097346129
Merged-chr11-5945325-4	chr11	5944807	5945807	+	737.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010292, intron 1 of 9)	intron (NM_010292, intron 1 of 9)	4774.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	2.73914924825151	2.5720833872706	2.73274614856621	2.50831562122559	2.55325955292005	2.68367952900026	-0.572778293568835	0.454491366488112	1
Merged-chr2-155757490-2	chr2	155757020	155758020	+	796.083374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	6303.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	3.54799481011508	3.61921150110778	3.7522977545938	5.22264456257614	5.27397246570034	5.08899886418871	4.95611669246133	4.4645371761352e-14	1.07676872275901e-11
Merged-chr14-70833948-2	chr14	70833450	70834450	+	665.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18983.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	2.99927548084311	2.88634381511947	3.00030838380539	3.41195672551339	3.24063426933761	3.5760728521988	1.98007358860761	0.00353643700282859	0.0475225856155299
Merged-chr6-123262096-4	chr6	123261605	123262605	+	810.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-2.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	5.56866259801435	5.97658375161523	5.84724639337145	5.24457639865647	5.12278938637094	5.61036391647462	-0.909409665761005	0.0110545744809294	0.107885178678064
Merged-chr12-108639400-4	chr12	108638954	108639954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	3701.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.91650046940527	8.21486884200568	7.77941993097041	7.89741519461252	8.14059994849439	7.78309862211075	-0.048347371779918	0.844372939626671	0.96373428957366
Merged-chr16-38821048-5	chr16	38820487	38821487	+	800.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029042, intron 3 of 3)	intron (NM_029042, intron 3 of 3)	7762.0	NM_029042	74663.0	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	4.07533652073897	4.41553852150563	4.10542753425677	4.72622222356706	4.55975052346537	4.66696678857494	1.10165482504795	0.0167911635576133	0.143761181305944
Merged-chr8-106169703-3	chr8	106169152	106170152	+	768.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357381, intron 1 of 9)	intron (NM_001357381, intron 1 of 9)	731.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	4.27199415456985	3.70036430695647	3.77717290252714	3.90575179431946	3.87035061746519	3.73889446429306	-0.326750567231621	0.560496674462966	0.865261302076164
Merged-chr18-61727162-2	chr18	61726689	61727689	+	715.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	799.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	5.72991146942013	5.89207325862014	5.47570227731496	5.33968969323729	5.36919651782493	5.05959149599669	-0.848753243430036	0.0165075455877655	0.142159992917541
Merged-chr17-34899632-12	chr17	34899053	34900053	+	893.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286573, exon 2 of 26)	exon (NM_001286573, exon 2 of 26)	579.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	7.10611160614217	7.45344629806169	7.72026318872806	7.28810903122509	7.61399618165992	7.72712116224594	0.159870745858793	0.564058563725553	0.866177392442008
Merged-chr16-38711412-4	chr16	38710915	38711915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	1620.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.63784672271435	5.55732723137427	5.56689231247067	6.02249865009836	6.31762277291798	6.28634752449011	1.10514740197451	0.000288606089108038	0.00674559984901731
Merged-chr4-135943982-2	chr4	135943482	135944482	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2466.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	4.13733194947516	4.16979162215421	4.18598225928235	3.87658914929903	3.83845136554953	4.07109537423718	-0.71094622560723	0.146946406224308	0.511487796876645
Merged-chr3-105039102-3	chr3	105038589	105039589	+	655.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	13864.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	4.82598616911911	4.97910551400098	4.60865807578259	5.10167856332438	5.16995475822148	5.13830997265453	0.670845893157067	0.0833231716673049	0.381991981713119
Merged-chr12-40430775-4	chr12	40430266	40431266	+	952.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15024.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	7.02531191426455	7.15136557128099	6.70784104295894	7.26182165204096	7.49590172504164	6.7500141832496	0.354557930863202	0.241665267154226	0.638790417401088
Merged-chr9-56506125-4	chr9	56505639	56506639	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87520.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	3.67854019627763	4.09716383594535	4.32331113418869	3.46830295342584	3.5366362908871	3.92344988563415	-1.28359141414471	0.0316421946184082	0.215615734158424
Merged-chr19-46645830-3	chr19	46645241	46646241	+	877.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	22340.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.93140824016014	3.78869129922448	3.87282375180339	4.04213328132591	4.09151685641153	3.89145882103304	0.463973337127699	0.357244840417628	0.7438765015717
Merged-chr5-125334803-3	chr5	125334326	125335326	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	6268.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.36183258413502	4.58880562716707	4.56399306862543	4.28581406053945	3.9030048127385	4.15294856842583	-1.05260857749172	0.0272097752200356	0.196465721668581
Merged-chr6-31218456-4	chr6	31217975	31218975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-1.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	8.85613079112684	9.25975975550679	8.72056313551958	8.60856361221162	9.2177846127403	8.62048965355172	-0.157168446013219	0.567504973087039	0.868096069575452
Merged-chr11-69768430-2	chr11	69767930	69768930	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	MIR|SINE|MIR	2518.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	7.36285675064455	7.38691235705916	7.26406730652108	7.44275338777833	7.57448587256275	7.14799090144963	0.101735865080926	0.678597879282405	0.913506857021087
Merged-chr8-106902107-2	chr8	106901607	106902607	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358982, intron 5 of 16)	intron (NM_001358982, intron 5 of 16)	8467.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	4.10790180689683	4.27351393487775	4.04226270557572	4.05778752116624	3.93722922130531	4.20423224622101	-0.255384158038727	0.600629813502214	0.881747178918412
Merged-chr6-119918867-4	chr6	119918353	119919353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149727, intron 7 of 10)	intron (NR_149727, intron 7 of 10)	16155.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	4.57799556827859	4.37180354881353	4.91713498408204	4.52054042640853	4.48594683959125	4.41125025525165	-0.377690076266134	0.400327072386375	0.776502751623048
Merged-chr4-130791109-2	chr4	130790609	130791609	+	696.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1428.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.06205906393947	4.97029563078098	5.11305423450755	4.82322498288909	4.77245571122663	5.14451109353369	-0.294332194358015	0.445383034619453	0.805114741355973
Merged-chr5-102064661-2	chr5	102064161	102065161	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	5260.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.20888852617183	5.54172338566284	5.55296669261785	6.08772262733715	6.02843393643193	6.06148542617057	1.12321618076509	0.000448744152994506	0.00964834715306637
Merged-chr13-75789626-4	chr13	75789133	75790133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50252.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.78454806145386	6.81093752268372	6.75397307568489	6.56191946410571	6.6065126583504	6.84209664475211	-0.183293658111212	0.475486033771724	0.821994554518358
Merged-chr6-65151948-4	chr6	65151448	65152448	+	924.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7218.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.60228355455909	3.53884359214473	3.57083708156139	3.731710138013	3.57856977078636	4.03125931505093	0.720820473756142	0.202124299213811	0.591799806079834
Merged-chr11-120901340-2	chr11	120900840	120901840	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 7 of 18)	L1MB3|LINE|L1	31532.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	2.94696851547771	2.7303672461702	2.77593994014639	2.73778052250361	2.37711888645846	2.5238803921071	-1.53578522261303	0.0659198321237674	1
Merged-chr15-73616813-2	chr15	73616313	73617313	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	PB1D7|SINE|Alu	511.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.68336724806894	5.7140209792942	5.36105345444678	5.69920084433071	5.63360939279857	5.57893627138192	0.0590192733472356	0.85755135302946	0.966767080388296
Merged-chr11-8567351-4	chr11	8566837	8567837	+	969.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97198.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.11882019934593	7.19430416541895	7.41356262742083	6.88718455275527	7.18438984374941	6.77916977474295	-0.406681318346781	0.123656131915942	0.470659623115383
Merged-chr1-191329184-4	chr1	191328688	191329688	+	946.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	3223.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	5.45157986858295	5.43570231153006	5.41166729707617	5.5919088959629	5.70143916122635	5.56348032165738	0.362197556667904	0.260733356004147	0.658224767876399
Merged-chr15-84982087-4	chr15	84981575	84982575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	5896.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.55055760444179	6.90153717672277	6.35196592485842	6.63387630613469	7.02631739726605	6.67145145068113	0.258691659237994	0.388612373326595	0.768469470026125
Merged-chr17-32091464-4	chr17	32091007	32092007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027316)	promoter-TSS (NR_027316)	-84.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	5.02869109780842	4.93797108456817	4.86927080323176	5.0297346743525	4.94904972736141	4.6928337843523	-0.0956941964042872	0.80560626789725	0.953956034266138
Merged-chr19-4192028-4	chr19	4191535	4192535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-139.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	6.44841354697479	6.57439412048462	6.19050980862496	6.46914579857987	6.68087215129003	6.69641839312666	0.310960954188157	0.266451739770816	0.664166899200562
Merged-chr5-105559331-4	chr5	105558845	105559845	+	825.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	L1MA5|LINE|L1	39874.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.7408401245341	7.72765549272049	7.12887054675839	8.01712458552856	8.25229097639198	7.60056200171575	0.601176114747281	0.0412241631375418	0.253512865335231
Merged-chr2-75585145-4	chr2	75584642	75585642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74117.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	3.10491625064484	3.18187308877551	3.00346241793475	3.07288054693113	3.11105377480977	3.13625893765898	0.0136412745624143	0.983279658295532	0.996255225925919
Merged-chr12-85492287-4	chr12	85491805	85492805	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18415.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.20932854343078	4.03834521201294	4.42208506912477	4.51155336315233	4.07104830200835	4.36330007803852	0.265529589219412	0.586485960532753	0.875566335987149
Merged-chr11-57951782-4	chr11	57951185	57952185	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57379.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	3.26760412118825	3.10545968854116	3.23153962281074	2.98254552701755	3.06383535825243	2.94657165057194	-0.890754939703821	0.181892690471419	0.564567554041549
Merged-chr8-57487194-4	chr8	57486748	57487748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126555)	promoter-TSS (NR_126555)	612.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	7.0078046941665	7.26346723217591	7.16937867881431	7.10997962092316	7.19430736647524	7.02188957612835	-0.0538848644870101	0.824725104858832	0.958596193929081
Merged-chr17-80205767-1	chr17	80205267	80206267	+	555.0	f0_balb.idr	intron (NM_001360435, intron 2 of 6)	intron (NM_001360435, intron 2 of 6)	1538.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	4.62116106492871	4.288968709516	4.31724039555989	4.21830682590962	4.16670068943887	4.19982674055483	-0.611180064895371	0.186951374064261	0.571801137038743
Merged-chr8-22476907-4	chr8	22476406	22477406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-27.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	8.18694978802014	8.02751558250421	7.84869071382151	8.00719761358644	7.77559394597968	7.62595866114012	-0.308841546825485	0.194860430177689	0.582523053611595
Merged-chr8-10841285-4	chr8	10840775	10841775	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41179.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.69912264448199	4.36894430561745	3.96204955176295	3.92311707337468	3.68083587688651	3.75179437309552	-1.75825723091835	0.0014224428546047	0.0237620206878033
Merged-chr13-44730617-4	chr13	44730119	44731119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205044)	promoter-TSS (NM_001205044)	-155.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	7.58618674653814	7.20537424795956	7.42703886634119	7.57037920805668	7.38561163945817	7.19875364115523	-0.0254197622194865	0.920293219560818	0.982323255407855
Merged-chr3-153408074-4	chr3	153407572	153408572	+	886.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-109423.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	3.69263313587327	4.04186592619741	3.8967677897268	3.68587255649755	3.57381301366728	3.71303360010986	-0.764273733289811	0.161019306896937	0.533682780680334
Merged-chr5-140757221-2	chr5	140756721	140757721	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	33094.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.95705029298437	2.75042682610243	3.12308835993143	2.54676741021974	2.53809437895115	3.03091457192739	-1.15551656752982	0.157437904439935	0.52874937869134
Merged-chr4-145254577-4	chr4	145254070	145255070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-7700.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.03303514068049	4.57251920250944	4.70070449274698	4.75970230054858	4.45867392371243	4.32394865162987	-0.605643659781543	0.18015981432347	0.561849644263301
Merged-chr9-65539960-2	chr9	65539460	65540460	+	910.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40127.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.47392005155119	5.14741770244258	4.98893760551956	5.20875935094298	5.29885472418619	5.42070061453062	0.156323562790724	0.674013245494441	0.911790049116413
Merged-chr2-124651312-4	chr2	124650866	124651866	+	829.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-2215.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.28863746722656	5.37576907772096	5.69597641811313	5.21365020379818	5.47242976735484	5.63199593469403	-0.0159606337792577	0.96450893763047	0.991478598183903
Merged-chr2-62646196-4	chr2	62645711	62646711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	44.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	8.23159836885792	8.44565884839268	7.87695992871997	8.18479516909703	8.50638816758093	8.00584989138819	0.0607284725179616	0.817678487557383	0.956767881392089
Merged-chr11-48800372-4	chr11	48799820	48800820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-40.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	8.45856681205516	8.64059454623824	8.14889560519009	8.56960517624801	8.69118378789575	8.02496066944882	0.0424854106793548	0.875126150755881	0.970909654971172
Merged-chr1-179803131-3	chr1	179802636	179803636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 1 of 35)	CpG	879.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	6.8123827313657	6.79916564082073	6.68074107867329	6.90974209104445	6.58472575720618	6.63996817910528	-0.0787730461101041	0.764521749313326	0.941979298344481
Merged-chr19-29420177-4	chr19	29419679	29420679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	9260.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	7.29980310246133	7.31627148537097	6.78669102763589	7.56284176278592	7.81158871992067	7.13136533577647	0.553105344853681	0.0641750750414718	0.330062510690264
Merged-chr8-106155302-4	chr8	106154808	106155808	+	960.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	4954.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	5.44085714784861	5.43529696984809	5.53007237865765	5.22789961625176	5.59011482379028	5.6192993670867	0.0480536784082464	0.888377863987437	0.97401529899353
Merged-chr5-24587333-2	chr5	24586833	24587833	+	695.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133913, exon 1 of 4)	5' UTR (NM_133913, exon 1 of 4)	583.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	4.91418233241757	5.07213872558509	4.68612010807998	4.79278945740619	4.77660624678345	5.01573918018071	-0.118276292499895	0.7678473841903	0.94270730875714
Merged-chr6-86790617-3	chr6	86790128	86791128	+	807.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2956.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	3.72184451030196	3.60240549744439	3.44617537935206	3.13635157696134	3.01034986366261	3.28906691703374	-1.91896209717857	0.00320569582497925	0.0443236188442794
Merged-chr1-92218037-2	chr1	92217537	92218537	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-37696.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	4.0618472674703	3.79598354603158	4.21282631443516	3.96032210465334	3.4769001375422	4.23786877286854	-0.315946597945467	0.591813830282562	0.877776841651413
Merged-chr2-124705096-4	chr2	124704605	124705605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51524.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.45591189060673	7.43655652550062	7.43567936860373	7.6665754090836	7.50468524012165	7.5728473095657	0.202807356048352	0.360889586096472	0.746938274913623
Merged-chr13-43769108-4	chr13	43768605	43769605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-16007.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.23518174264146	6.93361415961672	6.58613492795887	6.80950513574789	6.62509690265328	6.59187640868147	-0.428307285289619	0.138958877864097	0.497975378324468
Merged-chr11-89017988-3	chr11	89017495	89018495	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	18592.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.53480598968639	4.65098579048208	4.9975605189076	4.47685191329913	4.13659039096532	4.64680626595975	-0.753206240370406	0.105662536724909	0.433764288115161
Merged-chr11-62185129-3	chr11	62184628	62185628	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 10 of 12)	intron (NM_001029936, intron 10 of 12)	-63856.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	2.33783535341139	2.20212078399692	2.52256364560573	2.08624824593947	2.16473186043506	2.22480931777207	-1.43970747657388	0.114491853950985	1
Merged-chr4-127041412-4	chr4	127040901	127041901	+	825.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	19753.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	5.38665900384739	5.32964074258821	5.28449935308076	5.71041115422706	6.05009116172567	5.83438654342537	1.00938532545985	0.00208588860870724	0.031903490575102
Merged-chr2-30626182-4	chr2	30625677	30626677	+	916.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	31133.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	5.30255089690776	4.9185199184926	4.51894090724272	4.65371830899232	4.72230338106686	4.8421115855788	-0.503395206864404	0.256463991939345	0.653552886970565
Merged-chr19-55807990-3	chr19	55807498	55808498	+	915.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(T)n|Simple_repeat|Simple_repeat	66188.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.22678437523258	4.25119100133434	4.58463027569899	4.39403392968828	3.96186115531034	4.61251935348127	-0.0429143269233257	0.932195690856534	0.985074623409702
Merged-chr4-32564567-4	chr4	32564078	32565078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	7084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.09807155586027	8.04319198416718	7.96816579274251	8.11532346481466	8.30044339577292	8.03919525011934	0.172168600837596	0.424418677211361	0.792697196836987
Merged-chr4-133931556-4	chr4	133931049	133932049	+	894.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	36442.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	2.729275643116	2.73109263164383	2.69126303500366	2.46838973835754	2.3679017919179	2.5102192355825	-1.70254058534321	0.0364927727267369	1
Merged-chr14-75131088-4	chr14	75130595	75131595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	-28.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.46076111621714	7.69393095859968	7.46159592379534	7.67776683985384	8.01293319149464	7.59954881569173	0.343373608157385	0.163696481815191	0.537749158771312
Merged-chr16-76337107-4	chr16	76336620	76337620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35929.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.09937205182467	5.79805440274848	5.65864349466092	6.1406757957494	6.30698014894409	5.40030117280106	0.257553147446702	0.501177167987255	0.835459276647973
Merged-chr13-35380793-3	chr13	35380302	35381302	+	934.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-168754.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	2.88107703589269	3.20199331859535	3.18848521279534	2.62595895598161	2.52795516611915	2.66092568913453	-2.91796175027006	0.000633053081359046	0.0126530181306647
Merged-chr13-34711637-4	chr13	34711146	34712146	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27996.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	3.37116662221805	2.94583166480604	3.15811532743286	2.96245173724574	3.02147767228489	2.99141578055188	-0.795580649188744	0.248552994329155	0.645658488345029
Merged-chr11-53707311-4	chr11	53706808	53707808	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009012)	promoter-TSS (NM_009012)	11.0	NM_009012	19360.0	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	6.73537905562102	7.25230787211476	6.85640583485807	6.98194245793849	7.07371486299952	6.60272942948539	-0.0950507821595148	0.746025385425408	0.936260355453809
Merged-chr14-17413846-2	chr14	17413346	17414346	+	875.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247114.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.93638389909415	5.08051253656374	5.01540288019643	4.54833836789248	4.75530903800079	5.56215945621671	0.030122047844278	0.948927573387114	0.988169196639905
Merged-chr4-150867242-2	chr4	150866742	150867742	+	828.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133753, exon 4 of 4)	exon (NM_133753, exon 4 of 4)	12172.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	2.36939397868419	2.42784748667975	2.57648019992813	2.29230517370753	2.12644012198325	2.46542619967258	-1.0716865263236	0.22381344826366	1
Merged-chr18-9373430-2	chr18	9372930	9373930	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	76724.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.831801278426	4.36239896836721	3.91667993736909	3.89367592341836	3.67698205687791	3.47482571060171	-1.14492662147457	0.0518828242724863	0.290848618342993
Merged-chr9-75437177-4	chr9	75436718	75437718	+	761.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4306.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	6.15019023029839	5.94311066420533	5.92330493376537	6.67289426808707	6.73669264121635	6.21554054518919	0.942892447856816	0.00196841588820676	0.0305859849161359
Merged-chr7-81214147-4	chr7	81213608	81214608	+	956.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	CpG	304.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	8.18811231246532	8.10254515147222	8.06457567766062	7.96088155326712	7.79699753452088	7.95198218536376	-0.310876246428002	0.142705906278874	0.504233853663683
Merged-chr7-34389267-2	chr7	34388767	34389767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	CpG	438.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	8.11562934054334	8.43351274890664	8.34241139173324	8.3788523184147	8.24148547684619	8.34513311660132	0.0246168027504168	0.90957369974286	0.979548151897442
Merged-chr12-70113640-4	chr12	70113166	70114166	+	788.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1631.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	4.47179295635161	4.52092119735721	4.58234904723096	4.8076609822946	4.82777302492262	4.64934561972979	0.590414629667259	0.147337572823552	0.512227670074211
Merged-chr5-99979093-4	chr5	99978605	99979605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077267)	promoter-TSS (NM_001077267)	-167.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	7.71460364135935	7.90616981682229	7.86009528203484	7.70809403264164	7.63706362543893	7.67034720332675	-0.227002635136149	0.297691484333039	0.694429857818433
Merged-chr7-28268006-3	chr7	28267555	28268555	+	847.9833369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198425, exon 1 of 1)	exon (NM_198425, exon 1 of 1)	174.0	NM_198425	386655.0	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	3.80377179729848	3.35280312808513	3.2801770381062	3.2647483320832	3.05131429907177	3.03652617381904	-1.56080207718075	0.0228163470565404	0.176293305402602
Merged-chr13-92532280-2	chr13	92531780	92532780	+	801.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	4.0269790269048	3.92700397645282	4.09915167014789	3.98622701309234	3.83667479574873	4.41720921775441	0.219250514080313	0.674967014707816	0.911923869644697
Merged-chr6-13603329-4	chr6	13602805	13603805	+	964.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028990, exon 2 of 5)	exon (NM_028990, exon 2 of 5)	4793.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	3.63044241484958	3.68545184071281	3.82705770086035	3.54272017029944	3.71888887875563	3.64381867167782	-0.243783252975679	0.656807180222722	0.904693205515276
Merged-chr11-115133983-4	chr11	115133476	115134476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145634)	promoter-TSS (NM_145634)	16.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	7.28398187485367	7.2207451427221	7.16401206968069	7.2364242639777	7.53140824554113	7.25798538644059	0.193711844382562	0.421838962745834	0.790756682370678
Merged-chr3-97992577-2	chr3	97992077	97993077	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20961.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.63739372131188	3.89560626799387	3.89721777926881	3.76041744850122	3.59658091907065	3.81960387985234	-0.298128241546251	0.581953343358277	0.873484978987509
Merged-chr5-118638148-3	chr5	118637624	118638624	+	864.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	77405.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.89506578823942	2.86950730340534	2.97973162528011	2.78079453553607	2.52654019343859	2.68609902717195	-1.34572032801905	0.0764006924105055	0.363979048576774
Merged-chr1-84444852-1	chr1	84444352	84445352	+	564.0	f0_balb.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-160207.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.33762875670106	3.11053999758235	3.43713190887095	3.16392957411266	2.93480044716126	3.34948366052371	-0.605606314034231	0.366202897978447	0.751283584197618
Merged-chr6-129349641-4	chr6	129349136	129350136	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-608.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	6.06151981996943	5.73137094682461	6.19725501211214	5.83904268427122	5.9937440571553	5.93523947267241	-0.132246344481662	0.67447469783053	0.911852710156386
Merged-chr19-6271457-4	chr19	6270945	6271945	+	859.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5451.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	3.22083835346015	3.54290422233587	3.13097133256864	3.55916417659391	3.11109122090895	3.49730694137148	0.328936429435125	0.624771996109299	0.892217795485307
Merged-chr16-23984874-4	chr16	23984358	23985358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3575.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	6.73628488854974	6.65661743955604	6.66565382952013	6.70288460954101	6.39186174249521	6.80111121198869	-0.0862782834658631	0.750521090402763	0.937564211523741
Merged-chr4-106387015-3	chr4	106386506	106387506	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 32 of 67)	L2a|LINE|L2	70793.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	4.36905281611979	4.39729915233263	4.44888480966625	3.89239707920926	3.92458245620496	4.12382613942523	-1.21084351373784	0.0109378468144766	0.106990121825136
Merged-chr1-72106297-4	chr1	72105700	72106700	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101005.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	5.74927725058378	5.4706968606463	5.11130198200343	5.63625575743029	5.71829158168976	5.17838857603952	0.116569517414807	0.765112669642664	0.942123616786297
Merged-chr11-50244044-4	chr11	50243564	50244564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5532.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	6.32468543222749	5.82981122698754	6.01957566202973	6.09503656890982	6.14389945138164	6.01108999984294	0.0177048996132583	0.954703130582096	0.989617250984245
Merged-chr11-18957993-4	chr11	18957494	18958494	+	764.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	60975.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	3.06334051447034	2.92406038685852	3.04622916345958	2.86137490503777	2.86878699510329	3.27883009473974	-0.00494226042096502	0.994395657994626	0.998918571480046
Merged-chr5-114824349-4	chr5	114823899	114824899	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	-931.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	3.30098515976624	2.99652214515091	3.14799405410158	3.45103849428442	3.17165992261987	3.65307446855524	1.11073502868201	0.0951107523512418	0.411148363215922
Merged-chr1-52653558-4	chr1	52653071	52654071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MusHAL1|LINE|L1	22866.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	2.89026897018903	2.75186768204703	2.83280373156879	2.93478744096327	2.61368182531065	2.90612354304735	-0.0204975896504332	0.977770640855486	0.994934997786627
Merged-chr5-107960964-4	chr5	107960502	107961502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	26075.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	6.39253984843926	6.53647131162421	6.52102661035078	6.06340837375927	6.71557158246679	6.30020999640711	-0.131991698558237	0.671144765186001	0.910322003416633
Merged-chr3-95625314-4	chr3	95624802	95625802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	322.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	7.48306849775453	7.33868646578185	7.13434200052944	7.37205672600457	7.56237929010949	7.15311578413695	0.0731596792023879	0.774476367623426	0.944477929413368
Merged-chr18-34886153-4	chr18	34885658	34886658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24951.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	3.95315364151208	4.02241424861932	3.70789973054622	4.0402360896539	3.88795184510062	3.99007678067074	0.185794007980476	0.719111630202134	0.92766367653205
Merged-chr3-142560557-4	chr3	142560119	142561119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289493, exon 1 of 11)	5' UTR (NM_001289493, exon 1 of 11)	263.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	7.47249547637837	7.39741571944807	7.27251098213682	7.39148422646506	7.69650879358081	7.29452072659719	0.139280577997256	0.572836831430574	0.869934493236159
Merged-chr10-40141659-2	chr10	40141159	40142159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	595.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	8.06041245310659	8.34336363179597	7.9989883007898	7.97740470975466	8.30630245269987	7.8978893626591	-0.094731504049345	0.69709803705537	0.919839094614619
Merged-chr5-105698014-1	chr5	105697514	105698514	+	644.0	f1_balb.idr	Intergenic	Intergenic	-1955.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.5268382152874	4.30307962337043	4.05405100438834	4.1020250079236	3.8840588434182	3.8578145146772	-1.03501436587831	0.0418978332152384	0.256136186991603
Merged-chr16-91826000-4	chr16	91825519	91826519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	96648.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.84302901839168	4.63056437336571	4.74628600219904	4.82540968079728	4.59314514105751	4.65328821792342	-0.116891424386125	0.774176312219948	0.944321484608801
Merged-chr7-36720224-4	chr7	36719713	36720713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22095.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	4.93880032782282	5.39221473225497	5.04244818664282	5.65742394908893	5.59451799629777	5.50270231618399	0.85940128202979	0.0183373197583124	0.15277500957987
Merged-chr1-134784632-4	chr1	134784142	134785142	+	780.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	19079.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	5.27777592260842	5.25896017256224	5.43863200867402	5.20859995551139	5.08538833304321	5.52812081840649	-0.0966656912080136	0.789442972265194	0.94921167421876
Merged-chr8-122465148-4	chr8	122464653	122465653	+	953.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033142)	TTS (NM_001033142)	-4461.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	3.66300601136915	3.80670580845033	3.95598179326319	4.65082558373869	4.23237898543448	4.02790658657245	1.53031311733101	0.00389902671483988	0.0509469558555899
Merged-chr11-75457983-3	chr11	75457600	75458600	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3383.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	7.05890213970066	6.63228634721342	6.9150865314409	6.83178427309702	6.9414557368037	6.9314326968526	0.0354046633124487	0.893424136744759	0.975237866709772
Merged-chr6-89455569-3	chr6	89455076	89456076	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-92963.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	2.52330974969744	2.6072472678076	2.67449405199449	2.63971200529492	2.44414912457554	2.49385607157278	-0.428192769447232	0.584075743380427	1
Merged-chr16-20516970-4	chr16	20516480	20517480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347176)	promoter-TSS (NM_001347176)	-6.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	6.07604355769773	5.84811878014771	5.95216654954369	6.09420886651749	5.95670978973917	5.91746936667592	0.0537488870655051	0.856612699040844	0.966560323116284
Merged-chr19-36083727-4	chr19	36083227	36084227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	11.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	5.29071547517508	5.46563806110307	5.60676427471049	5.46862190891851	5.35303556940556	5.32281268836434	-0.133739256042502	0.694736281305522	0.919217788511748
Merged-chr3-121694111-4	chr3	121693611	121694611	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23348.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	4.84888507255447	4.82591498092375	4.93913313785886	5.52228175657438	5.71620962822439	5.1884477640005	1.30968813168894	0.0004446653755347	0.00958045483363317
Merged-chr13-64126138-4	chr13	64125630	64126630	+	804.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001321, intron 1 of 11)	MTD|LTR|ERVL-MaLR	3200.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	3.6559935878563	3.59618701604969	3.72804663552626	4.18548279088105	4.15287079053841	4.00621599231285	1.46993856327918	0.00447092439495933	0.0566235429308639
Merged-chr11-4639790-2	chr11	4639290	4640290	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	ID4_|SINE|ID	1997.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	4.69602656784689	4.77847850350512	4.6750503258508	4.90010334005122	4.82488430560802	4.48045194359221	0.0884975122907139	0.831094793566544	0.960409172059259
Merged-chr3-129634551-3	chr3	129634027	129635027	+	850.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_130450, exon 5 of 5)	3' UTR (NM_130450, exon 5 of 5)	90559.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	4.4151550339007	4.63135029205601	4.43160082353023	4.57269671292017	4.4984558132952	4.70219651934604	0.210855871805216	0.621767856138196	0.8908398051148
Merged-chr2-30929080-4	chr2	30928576	30929576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23925.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	7.60290314746767	7.78357528108106	7.48390560965401	7.59337293614125	7.77153855956288	7.33071834078981	-0.0682361983337547	0.78365074081951	0.947273157369161
Merged-chr17-56611148-2	chr17	56610648	56611648	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1377.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	4.01231130124032	4.24840966150914	4.98029290565357	4.39323790346812	4.40379802616373	4.88783324640519	0.242667070749156	0.656803917214024	0.904693205515276
Merged-chr8-56063367-4	chr8	56062866	56063866	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	122541.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.75691369775881	3.79565741437951	4.03079745527196	4.14492235751774	3.83999534742937	4.14416434554645	0.563172609184477	0.277694374251122	0.674855968126621
Merged-chr7-75797838-1	chr7	75797338	75798338	+	618.0	f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	-50500.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.87426268407837	2.9386420065054	2.9411085602079	2.8092108528102	2.82641780106432	2.89374740627114	-0.378107729581223	0.585355981535594	0.874958242973642
Merged-chr13-64402110-4	chr13	64401597	64402597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68-int|LTR|ERVL	-30456.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	6.13874891166826	6.22004901593435	6.21485310805294	5.86015226165706	6.0361177920083	6.04118937822434	-0.357273535377987	0.213090754817987	0.605830988037554
Merged-chr1-173762686-1	chr1	173762186	173763186	+	662.0	f0_c57.idr	intron (NM_008329, intron 1 of 8)	intron (NM_008329, intron 1 of 8)	4233.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	2.45120286542757	2.59643501832067	2.57843263098855	3.00478240843326	3.48265673464454	2.99482514584692	3.94096904872334	6.84139845189568e-05	0.00204916876308616
Merged-chr10-127666180-2	chr10	127665680	127666680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	523.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	6.01733982490897	6.09031793175583	6.27688494554195	6.52413355955911	6.54636204957868	6.45015725039402	0.639531784609989	0.0198734444034324	0.160718200206123
Merged-chr2-32601608-3	chr2	32601107	32602107	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	1898.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	2.25468044581932	2.22407774329628	2.41170581549592	2.3991599364842	2.18833716055125	2.4859306017774	0.41643976574644	0.625693560341862	1
Merged-chr1-170884944-3	chr1	170884402	170885402	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151477, intron 1 of 4)	intron (NR_151477, intron 1 of 4)	638.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	5.80624241113117	6.05709849038498	5.75892957291422	5.82781927408517	5.60024636735002	5.27044456984545	-0.526037420344562	0.127331370567737	0.47699287574227
Merged-chr3-69700523-2	chr3	69700023	69701023	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-21532.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.28154475615766	5.06515172949704	5.10864409361128	4.93280532357563	4.86708124319562	5.26794597202664	-0.286682409513142	0.451594697141747	0.809206897170598
Merged-chr17-78400731-4	chr17	78400245	78401245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001285946, exon 5 of 7)	exon (NM_001285946, exon 5 of 7)	17407.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	6.10139599180786	6.48328054069856	6.55231468033457	5.93608544287537	5.88558588642022	5.94837310492694	-0.792057924464592	0.00883629088539842	0.0923797074999663
Merged-chr1-46852859-4	chr1	46852357	46853357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	CpG	761.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	8.41412727588229	8.32726053269036	7.93191678584156	8.0500081579124	7.86466544295106	8.01877872444501	-0.381085995234999	0.108219585468292	0.439398218728357
Merged-chr4-136146168-8	chr4	136145639	136146639	+	996.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008321)	TTS (NM_008321)	2317.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.11075476136048	8.18940272143198	7.61533688622923	8.19474763655627	8.3453720446842	8.03537872782663	0.277899801867381	0.275270409572026	0.67273769317911
Merged-chr17-33919137-2	chr17	33918637	33919637	+	741.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009318)	promoter-TSS (NM_009318)	-341.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	7.06008049555214	6.49681560055612	6.75939374827	6.58557419804823	6.77458503931805	6.5353866309207	-0.240057287495361	0.408283309350835	0.781982251625038
Merged-chr3-84942393-3	chr3	84941880	84942880	+	923.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-9831.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.53806633213131	3.6234600074688	3.89842230868375	3.59243415264574	3.2123136809021	3.62871348184095	-0.727837229486033	0.232723867322573	0.629023470916895
Merged-chr9-53669945-4	chr9	53669401	53670401	+	836.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2394.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	2.83929200578085	2.79234778652419	2.96363177126698	2.61980234162266	2.7641598476326	3.03503005816135	-0.257838406117122	0.727494600849542	0.930204882969987
Merged-chr5-139410211-2	chr5	139409711	139410711	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3824.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	5.06741291984858	4.8333022033796	5.03936020096093	4.63838292775196	4.47377345176264	4.74669190473637	-0.843878722021529	0.0366355861384189	0.235541172261286
Merged-chr10-70193601-2	chr10	70193101	70194101	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001111121)	TTS (NM_001111121)	-11063.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	2.52812275943313	2.38780200417842	2.66948470096717	2.4847160528657	2.2839095278187	2.55964417146614	-0.524477243237755	0.525305619535398	1
Merged-chr17-88509293-4	chr17	88508803	88509803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20821.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	5.07617847910762	4.96737521653158	4.77974819282061	4.62220997552334	4.66499106440621	4.50749734847509	-0.79713890131326	0.0492065581219303	0.281923795924367
Merged-chr2-29869892-2	chr2	29869392	29870392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 1 of 11)	intron (NM_207298, intron 1 of 11)	398.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	4.10100066264173	3.95652631295002	4.05527543800157	3.44262037716862	3.37855996707481	3.84112497693043	-1.62693716818688	0.0047759865905277	0.0593223305306208
Merged-chr1-59608591-4	chr1	59608094	59609094	+	967.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	62240.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	4.23163685644679	4.3103953202839	4.31701148409211	4.65947939896216	4.72206727386765	4.82889923920152	1.12206202672681	0.00844407157701483	0.0894708146925061
Merged-chr6-86671027-4	chr6	86670508	86671508	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1849.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	4.43938243019659	3.90785107250029	4.34615558391209	4.47908629827845	3.93752149449783	4.18956969449501	-0.0819306156508711	0.87651756350956	0.97133542879415
Merged-chr17-56075582-2	chr17	56075082	56076082	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 1 of 11)	intron (NM_024432, intron 1 of 11)	3751.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	4.0749345210214	3.90756699684061	4.2888915853619	3.85542102402713	3.91956510272733	4.0495654494892	-0.448602671189789	0.376026804759918	0.758951282467405
Merged-chr4-63394570-2	chr4	63394070	63395070	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 3 of 21)	intron (NM_001045514, intron 3 of 21)	3670.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.22073761859361	2.95496532951739	3.2416440484228	3.08585176344065	3.14339974301392	3.41914883161631	0.32030228792061	0.628881652675462	0.893945342282012
Merged-chr2-148873944-2	chr2	148873482	148874482	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	1530.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	4.11325507018299	3.92255684787512	4.249694480317	4.13661549899264	3.89761696997533	4.14015438378548	-0.111586478244409	0.822632959781996	0.958134952997982
Merged-chr2-131196723-4	chr2	131196195	131197195	+	936.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111075, intron 13 of 14)	intron (NM_001111075, intron 13 of 14)	9747.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	3.09933139474117	3.04785989426344	3.05802809858621	3.02362885293808	3.14924394168374	3.18781356335735	0.231779906317255	0.720759897269107	0.928324696220711
Merged-chr4-83327624-3	chr4	83327089	83328089	+	881.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3400.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.25467560051141	4.35141416663038	4.84438332017418	4.94152782736647	5.11146389075648	5.01315271385581	1.23560699430237	0.00454442543773886	0.0572407738152248
Merged-chr8-72135778-4	chr8	72135265	72136265	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001491, intron 1 of 7)	CpG	473.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	6.45136534548889	6.59584611905822	6.45849647745134	5.83369247992807	5.47167304821154	5.84801764669804	-1.35590150278291	7.07960630033833e-06	0.00029841939262338
Merged-chr16-32814604-4	chr16	32814089	32815089	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4143.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	4.52196204324943	4.42952746336812	4.25646865497253	4.35364376609107	4.25054960069037	4.69780181358185	0.0581280450988375	0.89985318596604	0.976728292075907
Merged-chr15-38515004-2	chr15	38514504	38515504	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301688, intron 1 of 11)	ID_B1|SINE|B4	4262.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	3.99495852264939	4.02154954429976	3.67131831214785	3.99650662636038	4.18107002905595	3.91075469882832	0.377234657095263	0.475127678199425	0.821727753368561
Merged-chr10-84573849-4	chr10	84573349	84574349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3098.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	4.70473446450785	4.76915954082827	4.664468157598	4.74875524539726	4.67499451055446	4.69059067246361	-0.0287502465726751	0.942436084164005	0.987202156853573
Merged-chr19-32330425-4	chr19	32329902	32330902	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	18914.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.24100114747247	4.11220271151314	4.71482726441136	3.62420102643316	3.75204554433389	3.98560510862505	-1.71982448774188	0.00176886262199785	0.028104659861714
Merged-chr4-14865206-1	chr4	14864706	14865706	+	540.0	f0_balb.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	987.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	6.45665209869899	6.51758151370655	6.23896516786091	6.36889558400208	6.49589031500351	6.14592343339181	-0.100585016717383	0.72494303741601	0.929475409375828
Merged-chr2-155696392-4	chr2	155695863	155696863	+	937.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	5.2522614913132	5.33165497509885	5.14707044863779	5.36017075854939	5.42035592813607	5.14181174808042	0.142200003951532	0.686342232868996	0.91669877499987
Merged-chr11-116844130-2	chr11	116843630	116844630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	615.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	6.65691576715187	6.67898847528885	6.81494916046693	6.78556948597026	7.03751112048032	6.87334698624543	0.302678035308014	0.234156614606814	0.63036877369004
Merged-chr10-71347748-4	chr10	71347255	71348255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-8.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	7.24750366257285	7.19235667484202	7.22516869471349	7.14188495406073	7.21976867725808	6.89893283235462	-0.177223344364431	0.466023323770732	0.817284254190344
Merged-chr13-102695482-7	chr13	102694992	102695992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	1934.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	7.28324030071047	6.91349617325002	6.91230122989646	7.55446680892166	7.74627961914839	7.44469880546823	0.797814935167689	0.0019273586347887	0.0300546584114502
Merged-chr14-17433140-4	chr14	17432627	17433627	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-227833.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.0180087463813	4.03621754359426	4.38606106784012	4.15562495004486	3.87717647200355	4.45169784900578	0.0629946628309849	0.903443778166206	0.977827650905621
Merged-chr17-84789305-2	chr17	84788805	84789805	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028233, intron 1 of 37)	intron (NM_028233, intron 1 of 37)	1481.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	3.104289096457	2.82859475382985	3.02718444153178	2.67876523769326	2.56356959373588	2.86397207055655	-1.53891195045955	0.0444781188101876	0.265757238974443
Merged-chr1-63113716-7	chr1	63113244	63114244	+	989.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045915)	promoter-TSS (NR_045915)	523.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	8.36364123418991	8.40387553135478	8.11047347994093	8.37287753669867	7.94603721531871	8.17318802293242	-0.181176824958706	0.441544994575778	0.80271085664543
Merged-chr10-128303304-4	chr10	128302798	128303798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	-37.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	8.940297194018	8.90873543711501	8.40315717236602	8.75112370541236	9.07509323520993	8.43408295265281	0.0111564422036491	0.966974778315477	0.992418870149749
Merged-chr2-13572576-3	chr2	13571994	13572994	+	669.253967	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1817.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	5.31481581559552	5.26492711370813	5.51058451246136	5.00946762794212	5.01682357647161	5.28749478916726	-0.528600299256878	0.142608531176912	0.504032656746792
Merged-chr5-99297333-4	chr5	99296829	99297829	+	927.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030692)	TTS (NR_030692)	-44402.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.81772564468594	6.70137269451703	6.36410211276007	6.20945503170406	6.16996312214024	6.0546488704754	-0.818864602968682	0.00437891441403744	0.0557126468751112
Merged-chr13-102888572-1	chr13	102888072	102889072	+	540.0	f0_balb.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128317.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.11687070558402	4.98016340683829	5.14806769456825	5.709612873657	5.32003548167772	5.40494196887952	0.817898140194681	0.0230788294606008	0.177619886406759
Merged-chr2-145824970-4	chr2	145824469	145825469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	38853.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	8.044898732775	8.12646130423254	8.14041277155439	7.9900227916352	8.31300030624923	7.76292999264393	-0.0730737534015698	0.762862133125881	0.941663714620562
Merged-chr11-110698623-4	chr11	110698122	110699122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	219282.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.26958712061412	4.8566797342718	4.95040007502975	4.73643063326662	4.67389211241554	4.75019469850999	-0.72352536510761	0.0712453444244208	0.350117093011293
Merged-chr6-49367742-4	chr6	49367235	49368235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172216)	promoter-TSS (NM_001172216)	-4.0	NM_001172216	231946.0	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	4.2835579911258	4.20156329502646	4.51672060821234	4.37436891568009	4.42148648333517	4.33090469507507	0.127526916062894	0.77695240848719	0.944960604705842
Merged-chr19-53529777-4	chr19	53529250	53530250	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 1 of 3)	intron (NM_001085390, intron 1 of 3)	432.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	6.08569883417813	5.77653931001124	5.75853758200459	5.04800533963053	4.39152256009426	4.59387753167373	-2.41784278588859	7.62566922746747e-09	7.12940095594509e-07
Merged-chr6-55203357-4	chr6	55202873	55203873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177883)	promoter-TSS (NM_177883)	-10.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	4.37622639727249	4.71117433950885	4.19507512424561	4.66095116462175	4.36800685652749	4.54169730448657	0.170212945615259	0.715540919621419	0.926402055104375
Merged-chr1-88246142-2	chr1	88245669	88246669	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	19149.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	2.97295973665666	3.25290604049548	3.1192718527823	3.11098592408851	2.87787093902425	3.24773394483372	-0.175569985184939	0.797581868783011	0.951799370596145
Merged-chr17-10765056-4	chr17	10764569	10765569	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75122.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.51367873502355	4.71074348719915	4.19922448676616	4.43432742492493	4.20828835166325	4.36465707203992	-0.429283564912255	0.357838511541776	0.744373220152849
Merged-chr1-165670363-2	chr1	165669863	165670863	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-35822.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.7494447943925	3.50101025539396	3.55913505010127	3.75676435344858	3.37607144617725	4.02239248019102	0.431752533505656	0.475693696248756	0.822097349314942
Merged-chr2-127132583-2	chr2	127132083	127133083	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144818, intron 1 of 17)	intron (NM_144818, intron 1 of 17)	1371.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	2.59712159104134	2.46116472679693	2.49280130991409	2.60252521611425	2.58505469973357	2.69378809884263	0.613903374532384	0.42675696485733	1
Merged-chr7-38025076-4	chr7	38024592	38025592	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5540.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.44831457176265	4.40911934309827	4.24471399365589	3.67492971867609	3.47333374303322	3.76658367186736	-2.39114189256309	1.06710891063265e-05	0.000423828153870746
Merged-chr4-136239838-4	chr4	136239337	136240337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 17 of 24)	intron (NM_001008232, intron 17 of 24)	-8120.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	3.60543618861232	3.64674810009162	3.95971409437627	3.61433538179118	3.49289324713116	4.0268976078551	-0.0584231807392302	0.920342251506612	0.982334338973564
Merged-chr7-113637852-3	chr7	113637331	113638331	+	899.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-72844.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	3.10907593399867	2.94147641006998	3.27854339907393	2.97222811970103	2.85954580460708	3.01739398426923	-0.769723133785143	0.262771888222884	0.660745316709973
Merged-chr7-101550863-4	chr7	101550361	101551361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4941.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	8.1803235320082	8.08015167488056	8.24118272169439	8.48993552375487	8.92034366152797	8.21830856303354	0.581540178648797	0.0229124761265198	0.176761693819626
Merged-chr18-58536236-4	chr18	58535714	58536714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20026.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.61379296271508	5.99403644030325	5.93146098586313	5.2100645178804	5.72609717243754	5.67576878503388	-0.537579974298225	0.130273961504089	0.48249766761863
Merged-chr5-134520317-4	chr5	134519835	134520835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 3 of 15)	intron (NM_001039162, intron 3 of 15)	32099.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	7.13400361812877	7.04404893168547	6.71380380127747	6.9514522526933	7.23572284209122	6.61543190085286	-0.017766654805812	0.95167283999811	0.988920169725038
Merged-chr2-155442756-3	chr2	155442253	155443253	+	658.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1970.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	4.71674953384658	5.19476306254887	4.71856597815299	5.34433115829497	5.89769269703585	5.11342629187471	1.20883367314741	0.00588066577754426	0.0688114805256508
Merged-chr2-30967005-4	chr2	30966506	30967506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	912.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	7.5273806369052	7.77958162858484	7.68669810682748	8.01225361796252	8.18686888300643	7.78709274037319	0.496177065592871	0.0361228229791339	0.233761693455263
Merged-chr3-87906788-4	chr3	87906289	87907289	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-61.0	NM_001331051	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	7.72786808792916	7.89332035174211	7.60713758612895	7.7689868587243	7.30970565964617	7.55740705620401	-0.283810572205064	0.254858691378716	0.651959356603444
Merged-chr13-3805872-3	chr13	3805371	3806371	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	2.76497143247786	3.11287586572847	2.95564088206853	3.01260225726125	2.71926573259668	3.25488866939851	0.258002073231528	0.7299855868002	0.930720808358785
Merged-chr4-40217986-4	chr4	40217482	40218482	+	796.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 10 of 17)	B2_Mm1a|SINE|B2	21843.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	2.93209964375971	3.0496759167358	3.20909772650002	3.26162866912175	3.09045946176547	3.28041909696944	0.638421145250487	0.330368932876107	0.721867972104254
Merged-chr6-108828457-4	chr6	108827939	108828939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-202.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	7.33402579773993	7.46294734173267	7.17239449740568	7.45853529298594	7.75415454921134	7.29148358054314	0.281048153754538	0.271432627011895	0.668778286616632
Merged-chr12-16897412-3	chr12	16896913	16897913	+	927.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	MTC|LTR|ERVL-MaLR	2435.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.88755954748378	5.43154178279399	5.01757786026667	4.85255311229169	4.65204874409793	5.08232474382283	-0.597208099073188	0.152646762858237	0.520913416885052
Merged-chr1-125439416-4	chr1	125438887	125439887	+	826.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3660.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.75111357153053	4.75821495035625	4.90933614269482	4.81078992685097	4.87278988048896	5.07532954188349	0.258089507088599	0.507190648048335	0.838895570055974
Merged-chr8-124278076-1	chr8	124277576	124278576	+	778.333313	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	46682.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	3.41394480285626	3.48689548387571	3.35629268342505	2.83646986167433	2.65123083365602	2.95442910042877	-3.38103765624611	5.79479362168781e-05	0.00178055091459896
Merged-chr1-38988664-3	chr1	38988144	38989144	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026850, intron 1 of 5)	intron (NM_026850, intron 1 of 5)	830.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	4.97889962912195	5.41763778464466	5.10564074348497	5.34265242947686	5.10067924113445	5.26994472044421	0.100322557262964	0.789885981533051	0.949311112850285
Merged-chr3-144205384-6	chr3	144204900	144205900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010723)	promoter-TSS (NM_010723)	-145.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	7.76536529432813	6.86161946130979	7.26606422782462	7.34290130956014	6.92562585388273	7.4622267897193	-0.143842838611104	0.658611416999532	0.905014667687917
Merged-chr14-27351671-4	chr14	27351160	27352160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9729.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.71811987821207	7.00132746226242	7.1990222686295	6.97267146457351	7.04075920956075	6.98319896925018	0.0312613736825975	0.905059325425546	0.978232606263309
Merged-chr5-64383019-2	chr5	64382519	64383519	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	84923.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.01670894320315	3.84847188512557	3.96347447527233	3.58146700461554	3.84182001968224	4.29199903871255	-0.0391800883501306	0.944471597605164	0.987726163699689
Merged-chr19-11118679-4	chr19	11118174	11119174	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	12204.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	6.312297485288	6.59866280440145	6.24679792215371	5.64949856690769	5.69244525195296	5.90972052828624	-1.12749736254612	0.000201977217967101	0.00505751440042326
Merged-chr1-58740508-3	chr1	58739964	58740964	+	804.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 6 of 8)	intron (NM_001355056, intron 6 of 8)	9912.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.04288667823701	5.02590304297186	5.09497535719426	4.894951862724	5.19582990715524	5.12563140700754	0.062959793454271	0.865015779786442	0.968555071178263
Merged-chr3-36853374-3	chr3	36852892	36853892	+	972.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-9714.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	5.05871084591426	5.30427714042755	5.22166870159205	4.69407141601159	4.33488304618031	4.19380964132227	-1.76625296907372	6.52400945179506e-05	0.00197615499987246
Merged-chr11-22512650-4	chr11	22512093	22513093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153596, intron 1 of 3)	CpG	310.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	7.09900523610193	7.15501874406444	6.9624753682692	6.85456279946873	6.90531585186635	6.87773107290004	-0.305311205151149	0.206621570158264	0.597233737788891
Merged-chr17-32830262-4	chr17	32829720	32830720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293229)	promoter-TSS (NM_001293229)	41.0	NM_001293229	240064.0	Mm.476307	NM_177359	ENSMUSG00000095253	Zfp799	6030490I01Rik	zinc finger protein 799	protein-coding	5.87402220166705	6.26299857876327	5.78997906168815	6.32712113554995	6.5506300274276	6.25603857232911	0.647179013855546	0.0388617179259218	0.244396177551213
Merged-chr3-137950019-1	chr3	137949519	137950519	+	573.0	f0_balb.idr	intron (NM_011932, intron 3 of 8)	RSINE1|SINE|B4	31464.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	6.29955693332569	6.14332335343855	6.64469909725896	6.3971384572246	6.57605786974191	6.41623036006009	0.167585189053145	0.566968928979596	0.867700458659165
Merged-chr7-123337803-2	chr7	123337303	123338303	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	32112.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.24826917240642	4.10083363834415	4.5910696137112	4.36730343083286	4.17998564401398	4.29155231265463	-0.103599813425593	0.828115501737641	0.959633697141491
Merged-chr8-106011444-4	chr8	106010962	106011962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025518)	promoter-TSS (NM_025518)	-16.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	6.77618867916263	6.87256600941791	6.8177434507964	6.57509207065761	6.71585435186759	6.45887512482846	-0.355533200236363	0.168545801555316	0.545164589147318
Merged-chr8-25601480-4	chr8	25600976	25601976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-125.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	9.34839294679536	9.72857316286091	9.17407244759267	9.12259863119841	9.54887798912973	8.94855234906899	-0.276550348174361	0.291941056779912	0.689235268138963
Merged-chr11-117814103-2	chr11	117813603	117814603	+	729.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009304, exon 4 of 4)	3' UTR (NM_009304, exon 4 of 4)	4436.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	2.74871932184433	2.94530116211962	3.03925516508066	2.99106405785952	2.98764540206538	3.27624425500256	0.801860634122161	0.252360807598644	0.649830747012104
Merged-chr8-33646970-4	chr8	33646467	33647467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4991.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	4.21133628252135	4.17275492363365	4.38243028596188	4.40753729666015	4.0930797623237	4.36463251994844	0.0982927776092318	0.833550470388259	0.96108264611081
Merged-chr16-20372277-4	chr16	20371776	20372776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-46872.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	6.72649765069925	7.05272373943372	6.44517266451109	6.42753230767885	6.4491671782035	5.85192713169599	-0.783552412127252	0.0183422548998041	0.15277500957987
Merged-chr8-117541423-2	chr8	117540923	117541923	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	Lx8|LINE|L1	43148.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.67809506063248	2.41113414040794	2.63518564075123	2.40876367131339	2.30699044104882	2.64764981099885	-0.731777645217633	0.380177093012031	1
Merged-chr9-118506213-4	chr9	118505712	118506712	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018748)	promoter-TSS (NM_018748)	-106.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	6.28174853189506	6.24443467364596	5.96791727409332	6.35658955682238	5.91162683434546	5.90462504002885	-0.173304351654823	0.584188036669326	0.874532107931945
Merged-chr17-35127049-4	chr17	35126558	35127558	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033477, exon 3 of 3)	5' UTR (NM_033477, exon 3 of 3)	656.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	7.25610183181633	7.34646090538643	7.60585174771122	6.97129832519963	7.38123231693225	7.48590144660656	-0.161745653664719	0.545025992317648	0.858001414574823
Merged-chr5-113993902-4	chr5	113993421	113994421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198109)	promoter-TSS (NM_198109)	-164.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	6.57486134937688	6.72097113943237	6.70293737850967	6.7132052746178	6.43158237185383	6.66643006440304	-0.10106135647636	0.703149407810865	0.922108924938678
Merged-chr4-132074712-4	chr4	132074187	132075187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	CpG	626.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.90964689625107	8.30622434150193	7.66840714454196	7.45142620138924	7.77990210127701	7.53901698502182	-0.565257252171667	0.0349918317628179	0.22953096864963
Merged-chr6-37592548-4	chr6	37592050	37593050	+	859.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62377.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	3.90973132535888	3.98289319791767	3.55865308542086	3.45492383226694	3.70075394971202	3.79378718439462	-0.596294090062836	0.300977919777277	0.697656370973274
Merged-chr8-94373285-4	chr8	94372790	94373790	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-13139.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	5.08803953913561	4.70025816869827	4.68912121778192	4.7315228261829	4.70281879263245	4.98022805925918	-0.0995483503870804	0.810900705374334	0.955096593239846
Merged-chr12-52006486-4	chr12	52006022	52007022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029545)	promoter-TSS (NM_029545)	-15.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	5.99811098921422	6.26914201200894	5.88408120830486	5.85533562548239	6.18580165067905	6.01819999703882	-0.0635550483353517	0.83870175019348	0.96255643337768
Merged-chr3-28030970-2	chr3	28030470	28031470	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 5 of 25)	MTE2b|LTR|ERVL-MaLR	46799.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.92170116220632	5.51204321278529	5.31438903319067	5.38456982434448	5.67036226855636	5.60922207768047	0.55460084428232	0.140471045973365	0.500760820920022
Merged-chr8-90965726-8	chr8	90965192	90966192	+	954.3035890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 4 of 39)	L1MC4a|LINE|L1	33443.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.81167574883753	7.21422862714866	6.93294456464155	7.16266215349277	7.27872528247345	7.09968023121112	0.27829106633594	0.28002081024875	0.677736555745337
Merged-chr18-53313943-2	chr18	53313443	53314443	+	762.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	68281.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.02277871034851	3.03230134451506	3.1561760887864	3.17164810879518	3.06766269922347	2.99093099811773	0.0572559050739349	0.93055018596082	0.984590987823501
Merged-chr16-11007620-2	chr16	11007120	11008120	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1278.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.30930545937475	7.4274837739074	7.80188613801322	7.0372304452569	7.40755455165869	7.27912173092756	-0.398545356364021	0.135582816383184	0.49225826798202
Merged-chr17-6794604-4	chr17	6794111	6795111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11831.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	6.11488996802224	5.74631260837068	5.6686378870746	6.03084390608629	6.11552651061632	5.84055773578714	0.246058787576667	0.445749847971724	0.805334424093105
Merged-chr17-35920262-2	chr17	35919762	35920762	+	901.388916	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357740, intron 1 of 18)	intron (NM_001357740, intron 1 of 18)	990.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	4.73237754329926	4.60191100372031	4.9619393233128	4.568483980574	4.56857948227841	4.92605472968375	-0.181037483912036	0.669584547525534	0.909692012644768
Merged-chr8-33661284-3	chr8	33660807	33661807	+	823.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	RLTR21|LTR|ERVK	8069.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	4.45524009054779	4.36970164782097	4.66533646800035	5.89720195099324	6.10122526066755	6.18020443925741	3.30043681211345	1.13989044599198e-17	5.29877118603913e-15
Merged-chr11-98813511-3	chr11	98813028	98814028	+	976.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-3439.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	7.03425298166576	6.96273549743975	6.64737477545796	7.163845627884	7.39417566592377	7.0589237035763	0.482532290645789	0.0681302336563352	0.341566577217349
Merged-chr9-65435795-4	chr9	65435310	65436310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027134)	promoter-TSS (NM_027134)	28.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	4.44118777553715	4.28068577924315	4.00723028578376	4.33181980609435	4.1577612492327	3.97142284268658	-0.265047305673277	0.594874873336174	0.87924603206665
Merged-chr17-87539774-3	chr17	87539276	87540276	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-92841.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	4.737997600818	4.8678634386656	4.3019753691792	3.81059206366327	3.87664804601409	4.07587839418056	-2.07745682532362	3.89645352177504e-05	0.00128402417679151
Merged-chr19-41895135-2	chr19	41894642	41895642	+	674.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_199447, intron 2 of 33)	intron (NM_199447, intron 2 of 33)	1011.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	4.42728870209694	4.44287456742182	4.51457797037062	4.63615862826041	4.97647912417304	4.62418037130374	0.742469445811504	0.0806590255669697	0.375809716750547
Merged-chr6-34910823-6	chr6	34910235	34911235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013366)	promoter-TSS (NM_001013366)	96.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	7.74848374919557	7.47366266177004	7.42424511509557	7.35775938469105	7.18135298848764	6.95831254448944	-0.559162190823592	0.0280706587591503	0.200322337018971
Merged-chr12-36053818-3	chr12	36053322	36054322	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11344.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	6.10130441436024	6.01871964063208	5.45928821846771	4.27819127173988	4.12660193057036	4.32305928409171	-3.85824246495454	1.00543584390193e-16	3.90936007941082e-14
Merged-chr9-35267063-2	chr9	35266563	35267563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028040)	promoter-TSS (NM_028040)	742.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	5.8800615024564	5.71535169614961	5.99263318121241	5.65659819119596	5.56582796842129	6.11537502962745	-0.132729487538836	0.694396511220335	0.919210273513843
Merged-chr2-28517418-4	chr2	28516923	28517923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	4256.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	3.52737174068935	3.28095986312912	3.17751281739293	3.12504326380942	3.04215771278709	2.86347019249814	-1.3987306808496	0.0469516447849767	0.274334266827086
Merged-chr15-98506421-4	chr15	98505936	98506936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8962.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	6.42315126715158	6.46980976728653	6.30624353721243	6.01502534115798	6.42161354841921	6.40434080949444	-0.181722111303668	0.531144294765153	0.851437333400144
Merged-chr5-52677339-4	chr5	52676834	52677834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7633.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	2.62423574210479	2.76596219333169	2.84270958188625	2.60592561705961	2.51094231359283	2.79715972889858	-0.589848753368427	0.440384056346571	0.801759315323114
Merged-chr13-52024944-4	chr13	52024442	52025442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71799.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.48488149125986	4.44889342062513	4.61789429865572	4.57151638816759	4.28771875508433	4.30092031207866	-0.305852327588291	0.488863171802988	0.829423271678195
Merged-chr5-135078301-4	chr5	135077818	135078818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199677)	promoter-TSS (NM_001199677)	-52.0	NM_001199677	194309.0	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	3.02456108484423	2.8278613982945	3.03145145034654	3.09042487124753	2.74791616411349	2.79606516130548	-0.361228819557803	0.617496856888867	0.888810836054056
Merged-chr1-92648149-8	chr1	92647638	92648638	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153114, intron 1 of 4)	intron (NM_153114, intron 1 of 4)	703.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.41126181412271	4.35859641228707	4.49857848403189	4.13256382542289	4.25036072635999	4.31241222266854	-0.499766943071356	0.266030806096535	0.663824402864358
Merged-chr7-130533505-4	chr7	130532984	130533984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162855, intron 10 of 10)	intron (NM_001162855, intron 10 of 10)	-13115.0	NM_001271343	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	4.74683147044887	5.08113686230971	4.85801862392226	5.07609536111783	5.01810997727313	4.9977643007974	0.267542695602998	0.486251996146125	0.82774255514171
Merged-chr10-67126464-4	chr10	67125977	67126977	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-781.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.70375348447834	5.37323337154987	5.58028344484088	5.52857632483998	5.33342853094879	5.28132007444061	-0.3279773387995	0.34020386178126	0.729876755390994
Merged-chr14-64870265-2	chr14	64869765	64870765	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	79592.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.28563053238815	4.38171988089473	4.42401136986035	4.37112376191242	4.20171351125143	4.7210902686321	0.189609908999102	0.683023261975711	0.91523316791368
Merged-chr9-37545051-3	chr9	37544551	37545551	+	622.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020518)	TTS (NM_020518)	5796.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	2.28195248912392	2.3422950979007	2.45341844909809	2.24249208073086	2.41964598099174	2.13273510874803	-0.554859225992315	0.538287525004431	1
Merged-chr5-123019501-3	chr5	123018997	123019997	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	4423.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	4.76918854399803	4.65476151131854	5.02770062563495	4.70960146617295	4.64381943157865	4.57494327924822	-0.394075362040201	0.339228464521584	0.729122178214163
Merged-chr3-148805912-4	chr3	148805404	148806404	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148731.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.26302488651292	3.80293374753156	3.60404146416796	3.78049411206307	4.01409062940593	4.31894632156598	0.368850061069934	0.532780622592629	0.851971173271146
Merged-chr17-45565008-2	chr17	45564508	45565508	+	999.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357105, exon 3 of 4)	exon (NM_001357105, exon 3 of 4)	1072.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	4.74254041217022	4.74321367241549	5.62802453067894	4.85481559467126	5.02416724235181	5.27772538380065	-0.0854326467714858	0.854814543554101	0.966038421653227
Merged-chr9-57259934-4	chr9	57259423	57260423	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2676.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	2.53695717592201	2.36468013294263	2.32061261986256	2.50720561084963	2.29371779123028	2.7149213594854	0.598791304965168	0.482618138760438	1
Merged-chr4-56118875-2	chr4	56118375	56119375	+	917.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-586400.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.60693965938976	4.82531098255019	4.68792816313042	5.09609845544472	4.9068358189845	4.75511380792468	0.493263491735549	0.21918366632867	0.613227215079062
Merged-chr2-156720129-4	chr2	156719630	156720630	+	961.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042488)	promoter-TSS (NM_001042488)	779.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	6.96627939271358	6.56019525269166	6.49911721291275	7.1677247348079	7.09794448038638	6.55912828675152	0.43076103862542	0.15973592140482	0.532056624965065
Merged-chr2-27426547-3	chr2	27426078	27427078	+	946.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	1030.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.60390644921976	6.61270092476562	6.5806612274877	6.4716583931491	6.36719268247888	6.28590948611654	-0.354878121863527	0.177111753152505	0.557991547321708
Merged-chr7-6155663-4	chr7	6155153	6156153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	CpG	318.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	8.54988578064136	8.63474735572141	8.53397867254771	8.60540860502741	8.64570827220935	8.46998817656259	0.00572766548653625	0.977225893614526	0.994771164142869
Merged-chr19-53318527-3	chr19	53318019	53319019	+	688.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	MIR3|SINE|MIR	7074.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	2.59989697947344	2.7108151428716	2.81176043062041	2.53215901131611	2.65359173759803	2.6424040566041	-0.533722181562832	0.482430665170237	1
Merged-chr9-59767125-4	chr9	59766654	59767654	+	736.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	15980.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	5.22499554313684	5.50241141425415	5.34796504775196	5.56796896411394	5.47197086064771	5.31605697514485	0.184846469169048	0.590855226923789	0.877301111216348
Merged-chr17-81519786-2	chr17	81519286	81520286	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	Lx6|LINE|L1	218601.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.7051063106057	3.22508083465684	3.79292915551785	3.49925563064698	3.48008036049242	3.66599622139985	-0.161863672156773	0.793245654474791	0.950312844775479
Merged-chr11-101174145-6	chr11	101173662	101174662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007721, exon 2 of 2)	exon (NM_007721, exon 2 of 2)	1281.0	NM_007721	12777.0	Mm.8021	NM_007721	ENSMUSG00000044052	Ccr10	C-C CKR-10|CC-CKR-10|CCR-10|Cmkbr9|Gpr2	chemokine (C-C motif) receptor 10	protein-coding	5.89052826905379	5.94816132838147	6.19449497360506	5.97877652175976	5.96547990578332	6.00023503479156	-0.0476184333534417	0.872620145948479	0.970261003150518
Merged-chr3-87498351-4	chr3	87497877	87498877	+	726.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113238, intron 11 of 11)	Lx8|LINE|L1	-27201.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.78991308601628	5.86643484086642	5.84889240784586	5.53301527351449	5.84565467281082	5.65169517885528	-0.258148249551666	0.413702424542259	0.785359020041643
Merged-chr4-133162654-2	chr4	133162154	133163154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	32021.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.54431105214219	5.68387022303979	5.8930462355985	5.87589110625815	6.07010539989543	6.32131902984045	0.687697220631889	0.0323668864775361	0.218694985803714
Merged-chr16-90885573-4	chr16	90885060	90886060	+	959.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	49289.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	3.31493558001248	3.61508702527055	3.52918876350959	3.43738407147644	3.30617335430488	3.65054589264362	-0.103859514510459	0.863240557502427	0.968208989562349
Merged-chr15-98692391-8	chr15	98691904	98692904	+	843.34375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14943.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	4.4975956537785	4.63804445649755	4.08756556436747	4.72983004674713	4.62463555959545	4.26623075808143	0.301343945092021	0.537569463213514	0.854638692633842
Merged-chr2-169780131-1	chr2	169779631	169780631	+	600.333313	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	146485.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	2.94775651608078	3.15034991882147	3.08214356573133	4.14839814748364	3.9293618784996	3.60661298540458	3.58840832630592	1.85896234776026e-06	9.31249482434892e-05
Merged-chr9-56506549-4	chr9	56506035	56507035	+	849.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87916.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	4.0215419569643	4.375156773246	4.46507375916327	3.65203155320189	3.52154671007372	4.2104248892519	-1.41440910254861	0.0153955498577428	0.135098495773861
Merged-chr18-53254670-4	chr18	53254141	53255141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8979.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.03050769021553	8.06000645068905	7.71048781145775	7.91184321535396	8.06623744562366	7.48593315618787	-0.134875933596925	0.605131258302716	0.883394857670054
Merged-chr16-36935405-1	chr16	36934905	36935905	+	1000.0	f0_balb.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	422.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	8.69150809824529	8.81993052953101	8.61575049584164	8.79610245412607	9.11909832688807	8.46399435466481	0.158151757986631	0.51988245598357	0.846080022638884
Merged-chr13-34653599-4	chr13	34653109	34654109	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025831)	promoter-TSS (NM_025831)	686.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	6.05551434603291	6.31058982602475	6.02704343156906	5.94591012180296	5.53097612622756	6.06572662503623	-0.500992245292003	0.125977635300308	0.474743679619431
Merged-chr5-65724594-4	chr5	65724163	65725163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-26807.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	7.49646436733179	7.55022303962039	7.51140387716567	7.45493086694991	7.58625776576231	7.39108068663039	-0.0504179726374739	0.822338736372805	0.958041123079214
Merged-chr8-85038024-5	chr8	85037451	85038451	+	830.5644530000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122843, intron 1 of 24)	CpG	783.0	NM_001122843	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	4.69001104787784	4.52608056692218	4.78934526932423	4.36991316083928	4.18132586442245	4.42478203319197	-0.876325189303262	0.0460912253985109	0.271482443050586
Merged-chr6-97155793-3	chr6	97155336	97156336	+	798.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081111, intron 16 of 16)	B1_Mus1|SINE|Alu	-6953.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	4.22970080278597	4.49753182328122	5.04546323784566	4.66370611141807	4.48493346417651	4.70596805355614	-0.0186149793169067	0.969139124620903	0.992995172144871
Merged-chr2-180696888-2	chr2	180696388	180697388	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-4840.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.74374286622715	5.6214073646393	5.61040388580271	5.44944751833654	5.31664263588869	5.72459913227234	-0.31673446823291	0.344013134405361	0.732781529519016
Merged-chr3-127282570-4	chr3	127282052	127283052	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	121247.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	4.65954214310121	4.27425822433576	4.86640374354932	4.3181750417144	4.19034715090041	4.16978788641932	-0.989823803914231	0.038081809815294	0.241562401709833
Merged-chr19-53902179-2	chr19	53901679	53902679	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-1172.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.91269514670508	4.89251497271659	5.12362405229309	4.83524153670508	5.18368702022578	5.05496150823919	0.142603384765722	0.711051844487223	0.924558647751225
Merged-chr3-133758027-3	chr3	133757530	133758530	+	949.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213640.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.14738603845087	3.48564346780436	3.35975957214971	3.24627602511506	3.53122663380946	3.1971247085713	0.00675991065573026	0.991671705488592	0.998330602280556
Merged-chr10-3973814-4	chr10	3973307	3974307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 1 of 27)	CpG	732.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	6.22459767424526	6.36042645989413	6.04182824670771	5.72078194576596	5.9521444294275	5.25771209195544	-0.915327077168707	0.00975985376856409	0.0988675325510933
Merged-chr17-26463726-3	chr17	26463232	26464232	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	44740.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.63701223327158	4.92038243897928	5.27415257964274	4.37399694274145	4.52049332666038	5.0743543442315	-0.628644000019056	0.18536994913174	0.569470877644115
Merged-chr6-84742430-1	chr6	84741930	84742930	+	562.0	f0_balb.idr	intron (NM_177077, intron 20 of 21)	MLT1H|LTR|ERVL-MaLR	-148522.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.61561212192814	3.87654227405049	3.81308288489499	3.64344007830431	3.40281775936776	3.57099804663311	-0.813785964798897	0.150358577716195	0.517246479850651
Merged-chr5-34531842-4	chr5	34531345	34532345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	6061.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.29963383849614	5.97594920077166	6.43740849431318	6.18984695312704	6.36360084668307	6.54733662316418	0.210187820442029	0.486623537736617	0.827968495991911
Merged-chr3-95694040-4	chr3	95693558	95694558	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6141.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	5.45985737323806	5.30759329948395	5.12396080518637	5.6623626441382	5.43759813728104	5.59737992305657	0.482606702947999	0.16284520343862	0.536188662408322
Merged-chr9-82829264-4	chr9	82828771	82829771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022986)	promoter-TSS (NM_022986)	-535.0	NM_022986	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	6.21384346228443	6.06625970019439	5.43192760559739	6.08244175486774	5.88349741645859	5.62590292741381	-0.133983871056251	0.715690184669648	0.926447967236454
Merged-chr10-42270872-4	chr10	42270362	42271362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5880.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	6.87042759542901	7.07406289854372	6.65010007917221	7.01300606330281	7.34168884611801	6.80931102782975	0.304818488482572	0.284697570013189	0.682421085006849
Merged-chr17-40877797-3	chr17	40877303	40878303	+	814.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	2755.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	3.79560125906005	3.63750250613686	3.73784315988266	4.29222822147857	4.18705420882968	4.81720156217385	2.11855859237316	9.77187250269736e-05	0.00277792267579242
Merged-chr8-83108754-1	chr8	83108254	83109254	+	567.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-56598.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.59128796954488	3.61757052593106	3.68166482791178	3.35959756941345	3.35193490428356	3.6502608542407	-0.643365304602026	0.267263989610173	0.664581053738824
Merged-chr13-48967251-8	chr13	48966747	48967747	+	958.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015601)	promoter-TSS (NR_015601)	581.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	7.93228595760521	8.46476314168986	8.39021610812088	8.29444092993658	8.52420730931597	8.41777007615521	0.186469317145037	0.444267661275427	0.804143628616024
Merged-chr2-178023199-4	chr2	178022738	178023738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177400)	promoter-TSS (NM_001177400)	-46.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	5.02598610570027	5.93153932723648	5.24577229550056	5.39305366877185	5.8926479654823	5.27691467159467	0.159239421012579	0.718043105173837	0.927249469209724
Merged-chr7-7130897-3	chr7	7130388	7131388	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029584, exon 4 of 4)	3' UTR (NM_029584, exon 4 of 4)	5867.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	6.27385693003731	6.33738458155717	6.24934895964104	6.18911443975894	6.54415462798594	6.20497036537749	0.0761733159316947	0.791442025697692	0.949737938863565
Merged-chr6-122925779-3	chr6	122925277	122926277	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 2 of 5)	intron (NM_199311, intron 2 of 5)	3929.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	4.08921956807949	4.28066921641155	4.39459685036052	4.56248874546542	4.33006458582891	4.46157392024867	0.516989927486822	0.255911434777561	0.652867953552546
Merged-chr15-6578803-2	chr15	6578303	6579303	+	955.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1044.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.56949130279073	7.41038294589545	7.70597750583454	7.65471078083256	7.71283677436825	7.82894831936462	0.245951703054399	0.282044818169213	0.679908771156903
Merged-chr16-33177849-4	chr16	33177344	33178344	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7227.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	5.10325687499961	4.99870825128861	5.3295820302745	5.13358972651072	5.2088547880308	5.14259261629033	0.050836993858449	0.888740681461059	0.974158138411807
Merged-chr9-90100931-2	chr9	90100431	90101431	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 5 of 12)	B2_Mm2|SINE|B2	13889.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	2.6352944418032	2.5603636438226	2.74661062176077	2.56201279268425	2.3933242728167	2.57377071147518	-0.815674919300682	0.300240139507299	1
Merged-chr7-92675891-3	chr7	92675367	92676367	+	829.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-5955.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	4.61114922173868	4.41064095208129	4.98141229222722	3.88127501164056	3.72992266981795	3.94486133547378	-2.37450050117608	5.31261335822396e-06	0.00023351924580618
Merged-chr3-61365647-6	chr3	61365106	61366106	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028712, exon 1 of 1)	exon (NM_028712, exon 1 of 1)	1099.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.46185513222692	6.95249269087195	7.35271150099916	7.08906020243804	7.26843685662278	7.41000364926395	0.44210381364871	0.157383924273067	0.528623968470245
Merged-chr5-80931574-2	chr5	80931074	80932074	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88997.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.62328392094227	2.51553378754324	2.64948866296341	2.58231904188478	2.40893407377269	2.8418790204508	0.119949113986656	0.880228818328552	1
Merged-chr3-115644546-3	chr3	115644067	115645067	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70488.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.38877944757374	3.12619978779744	3.05253863802662	3.1619848733594	3.06263026631594	3.18628954066752	-0.287638650563526	0.661589727552759	0.906493864324557
Merged-chr12-81971158-6	chr12	81970608	81971608	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 19 of 35)	intron (NM_018814, intron 19 of 35)	111078.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	7.40758636822879	8.09098463866255	7.6037704544456	7.38829082880007	7.73864420405094	7.23664046882158	-0.376154469832239	0.199951861809171	0.588691335270592
Merged-chr15-55557348-4	chr15	55556863	55557863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	-45.0	NM_134092	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	5.9858137521678	6.23899138067279	6.12553846427099	6.49084378056976	6.28813705666655	6.11979302028027	0.321135056778546	0.273966625756678	0.671385256404596
Merged-chr12-56440595-4	chr12	56440069	56441069	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88851.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	5.10409610265322	4.98295870464099	4.85837502531458	5.66033725768382	5.85802955796488	5.48801736355596	1.36707481513956	0.000136072674032689	0.00367536352570874
Merged-chr2-90940379-4	chr2	90939878	90940878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-19.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	7.17491578914112	7.30763748238725	7.05656746974886	7.08881657246732	6.93788971542568	6.96443425301549	-0.289517695115379	0.233511418768749	0.629830266582389
Merged-chr6-97855763-7	chr6	97855265	97856265	+	993.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	48707.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.56785308659979	7.30437136274922	7.17891306550189	7.05653765641852	7.35779842074839	7.06831854306322	-0.283144961695979	0.273664094471878	0.671005315380766
Merged-chr4-135242490-4	chr4	135241926	135242926	+	774.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	30334.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.77176145863658	5.65909301652852	5.9694502641032	5.49881084905357	5.5387735597025	5.40712769900411	-0.573693603597969	0.0777478061234673	0.368051399665556
Merged-chr4-22358764-3	chr4	22358268	22359268	+	932.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172988, intron 1 of 8)	intron (NM_172988, intron 1 of 8)	1225.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	4.72292732989264	4.492260611578	4.50887677129334	4.14660389327781	4.76448929698157	4.53384668839099	-0.158598032652346	0.736414166718845	0.93314645298821
Merged-chr11-114747975-4	chr11	114747494	114748494	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	-17395.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	5.39374744896289	4.824370942208	5.19291075440664	5.41631750890025	5.21783182347859	5.38184775459262	0.360960551836409	0.347626909531049	0.735700597497696
Merged-chr10-41893847-3	chr10	41893324	41894324	+	883.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	6385.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.32717369709453	4.92296399086321	5.34517586640858	4.95336464939844	4.95278870324619	5.25965725680789	-0.318774160857221	0.411760096056495	0.784045307489855
Merged-chr11-54758777-2	chr11	54758277	54759277	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	B4A|SINE|B4	28926.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.29664446016335	6.06972372071094	6.16615012075208	6.0699760764731	6.05280786514227	6.00509686411466	-0.232863138135282	0.416452723692656	0.787371011884083
Merged-chr4-148644091-5	chr4	148643647	148644647	+	904.0300289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 1 of 10)	intron (NM_001085505, intron 1 of 10)	830.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.83601076762017	3.83252254779057	3.96187283138436	3.21461500373668	3.15473785760292	3.29915011083127	-2.62568221901953	4.00966002422301e-05	0.00131043123054025
Merged-chr15-81610480-4	chr15	81609983	81610983	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177821, exon 4 of 31)	exon (NM_177821, exon 4 of 31)	24269.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.03703968924733	4.01514930493138	3.677880787863	3.88225189178188	3.78482509886721	3.9606892185219	-0.17429801747476	0.741666044966374	0.93491112226457
Merged-chr17-23993089-2	chr17	23992586	23993586	+	634.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133731)	TTS (NM_133731)	5014.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	4.73331582645538	4.75687941076831	4.56747723508775	4.76622585902443	5.39135116432776	4.76528036411707	0.735914688660972	0.0938264719386379	0.408036662356703
Merged-chr5-31726358-2	chr5	31725858	31726858	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	MTB_Mm|LTR|ERVL-MaLR	28308.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	3.555257688038	3.74228914431485	3.46223072530796	3.6081338480063	3.61431166393657	3.64427598363242	0.0784969999118855	0.889199725892027	0.974207858658472
Merged-chr9-108936187-1	chr9	108935687	108936687	+	803.0	f0_c57.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	-461.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	3.75403847667041	3.72708504817806	3.72860514454785	3.65659925534155	3.69813776079377	3.46707867732849	-0.401639243363741	0.467602211872018	0.818056375344009
Merged-chr4-149169666-2	chr4	149169166	149170166	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2961.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	4.895750506301	4.85626380707511	5.07994157891081	4.70926624790721	4.74667574156316	4.94371601101666	-0.323561395453768	0.407645962296583	0.781792290496971
Merged-chr6-129181834-4	chr6	129181325	129182325	+	902.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053109, intron 1 of 4)	intron (NM_053109, intron 1 of 4)	1210.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	7.07681293174248	7.39838480729505	7.08192044918666	7.52496436507923	7.69859512132943	7.26659888950322	0.467929701672399	0.0714303790934236	0.350618370922116
Merged-chr11-119352268-4	chr11	119351777	119352777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018822, intron 2 of 7)	L1MB2|LINE|L1	3233.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	4.99015525080619	4.7887236932669	4.40165411367749	4.6027986743722	4.77809163598895	4.27068809613558	-0.419549184548938	0.375739288464989	0.758902704434662
Merged-chr8-116627994-4	chr8	116627499	116628499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	104992.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	7.16007397447248	7.2246756653863	6.87326977211532	7.7247514885892	8.0023856655967	7.52203976858349	0.981754791809137	0.000174275621249069	0.00447972830313786
Merged-chr10-10397057-3	chr10	10396533	10397533	+	648.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 20 of 36)	intron (NM_001127353, intron 20 of 36)	75281.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.83390369605708	4.71769417335935	4.64080685206168	4.91057378965674	5.12323495044951	5.49588875734815	0.976762814095768	0.0168147410906548	0.143883276087125
Merged-chr2-52576660-2	chr2	52576160	52577160	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-18049.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.4853342792998	3.36690559448618	3.66519912859042	3.24246801709961	2.98336141139511	3.58741640764782	-0.848657410176406	0.205973462538262	0.596556044561839
Merged-chr19-6856490-2	chr19	6855990	6856990	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081291, intron 6 of 26)	intron (NM_001081291, intron 6 of 26)	1721.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	4.06241086950867	4.29371587134509	4.26929035736628	3.66117909415135	4.18287178482468	4.15994573048077	-0.524715409032367	0.323454005588011	0.71668986599242
Merged-chr1-131092449-4	chr1	131091961	131092961	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	5382.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.32313652819502	4.24003788262642	4.37883981665067	4.46989379822558	4.46902538908024	4.89750367849939	0.768200311784256	0.0885456380214737	0.395008870281513
Merged-chr6-128362780-4	chr6	128362246	128363246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326586)	promoter-TSS (NM_001326586)	76.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	7.44562159662486	7.45078320062855	7.28021195570657	7.35198509966782	6.62916127630565	6.56491551469114	-0.733325600700855	0.0181568474949728	0.151777673936276
Merged-chr13-98871374-4	chr13	98870751	98871751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	PB1D9|SINE|Alu	19791.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.87122237831261	5.51183303689092	5.42606585451082	5.3056238694632	5.74885607200153	5.11056345102645	-0.356672186200425	0.358866284690338	0.74519810754794
Merged-chr11-51594959-4	chr11	51594463	51595463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10206.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	5.00642954654775	4.79037370873893	5.07180520964902	4.99651166942008	5.1032938217362	5.16840655881623	0.287858868056026	0.442740130361237	0.803309923833629
Merged-chr5-125440745-4	chr5	125440245	125441245	+	956.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029752)	promoter-TSS (NM_029752)	-823.0	NM_001359486	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	3.21723580723364	2.88797372960911	3.0385802454788	2.99134682488364	2.86259292314543	2.99142785829388	-0.508270661815139	0.462363304705321	0.815190019496792
Merged-chr1-85793387-4	chr1	85792899	85793899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133781)	promoter-TSS (NM_133781)	-42.0	NM_133781	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	7.35170133685577	7.44826378049051	7.28285359246911	7.39305431353127	6.88079637558711	7.36235321376449	-0.207427927544873	0.433142924495134	0.797683328828543
Merged-chr14-122112505-4	chr14	122111976	122112976	+	662.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	5394.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	3.6428834158266	3.6489386649862	3.66467096788099	3.52848647383628	3.75860837077707	3.68228645839054	0.0407504408793571	0.940794620618974	0.986888338850358
Merged-chr16-38769790-4	chr16	38769289	38770289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285793)	TTS (NM_001285793)	27530.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	6.03973055674506	5.98154239413954	6.10763649672516	6.52543498280781	6.66036840717742	6.29598043709537	0.786037726706367	0.00554575384432541	0.0659121676729937
Merged-chr13-96431904-4	chr13	96431401	96432401	+	912.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 9 of 13)	intron (NM_001042714, intron 9 of 13)	39259.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	2.75619721890936	2.92181493665214	2.92273068734311	2.69235393662689	2.85755704361169	2.99454422601345	-0.0838320381326273	0.907197160847212	0.978868492078838
Merged-chr3-109357863-4	chr3	109357366	109358366	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	17183.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.19456002960438	3.49275228799034	3.2195821356026	2.98006306574621	3.15278621844912	3.29138905299376	-0.702891089956301	0.287216427196536	0.684545951100586
Merged-chr15-73596663-4	chr15	73596153	73597153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168255)	promoter-TSS (NM_001168255)	-127.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	7.51559496161534	7.4303795454133	7.33359308726044	7.30017576044035	7.66143544275965	7.35713469032266	0.0376156732696892	0.877417600683284	0.971563826171465
Merged-chr11-19019010-4	chr11	19018514	19019514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-45.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	6.49008575764469	6.69032957925843	6.68779175668134	6.80397087894018	6.92610460421261	6.93815018225725	0.417431953832361	0.100846336117403	0.423513683621661
Merged-chr10-14045178-3	chr10	14044615	14045615	+	724.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	78736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.89885950489092	2.70487620070432	2.93284011098923	3.11822779524754	3.36886201138803	3.61009354546521	2.48765177755077	0.000835871962411298	0.0156620747413086
Merged-chr2-117028095-2	chr2	117027595	117028595	+	562.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-92976.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	5.03954570279115	4.62428318216123	4.87268982168461	4.77659622335804	4.71003338153658	4.78830005944543	-0.22801189890901	0.575237138225608	0.870967954417344
Merged-chr16-32171155-4	chr16	32170646	32171646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5552.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	7.58314092123585	7.31511469584328	7.4180230365916	7.4100904995366	7.31093479699903	6.99780641569533	-0.273824789123092	0.27716304887834	0.674411713974411
Merged-chr6-115534797-3	chr6	115534262	115535262	+	919.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9942.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.93598073537974	3.91323763698895	3.65583087830837	3.5289597534726	3.74404472922795	3.49798902836306	-0.809948908771439	0.154731804427835	0.523967279131993
Merged-chr4-145246891-4	chr4	145246393	145247393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011610)	promoter-TSS (NM_011610)	-23.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.19874232688529	7.33774547440762	7.14923364431104	7.29493138081476	7.30805120030842	6.94900014549638	-0.0461324699249992	0.853506566357452	0.965695174735892
Merged-chr2-129914374-3	chr2	129913881	129914881	+	978.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97959.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	6.21810868754898	6.1507129424027	5.85955005839099	4.24206381018629	4.29504713638114	4.66486079732448	-3.73967891867944	1.4768545861417e-18	7.7776023040303e-16
Merged-chr11-117353325-4	chr11	117352820	117353820	+	928.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017380, intron 5 of 9)	intron (NM_017380, intron 5 of 9)	21007.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.95750720081891	3.81716018283469	3.61873093603465	3.6000870432429	3.22669371646819	3.33838105709991	-1.49639250143477	0.0145614093325399	0.129947651113937
Merged-chr10-20046325-4	chr10	20045832	20046832	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	-102588.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.93238397839968	4.94425655272683	4.79118355238704	4.80443660048687	4.77698257009789	4.85700002345425	-0.195437266135482	0.611332746596708	0.886043810813775
Merged-chr12-80261053-2	chr12	80260553	80261553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-672.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.10245792865979	6.34561667512179	6.06869847001269	6.11968272049018	6.1281349781932	6.01415813933161	-0.15729717065024	0.58810624375795	0.876193818234966
Merged-chr7-110614871-4	chr7	110614326	110615326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	94.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	8.20492964119985	7.46959646306107	7.99005788344565	8.22204347949058	7.52274375511528	7.87916571125288	-0.0265526348318525	0.930526956694796	0.984578929459061
Merged-chr11-79611113-4	chr11	79610611	79611611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12052.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	6.4339059890702	6.3173072007292	6.12872337715776	5.85389288165838	5.83887577653227	5.85944139713406	-0.784241882258195	0.00714387394985356	0.0793310374508762
Merged-chr3-88178191-4	chr3	88177685	88178685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	-400.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	8.54194667126503	8.60111757092806	8.12074905538447	8.42132857473369	8.61037551325921	7.96079732800293	-0.106958719645351	0.691013334406224	0.918114481673316
Merged-chr5-34369023-1	chr5	34368523	34369523	+	603.0	f1_c57bl6.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-910.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	6.08546724908313	6.02429183249826	5.95278690740279	5.89417070993396	5.88226111176146	6.01378379260025	-0.174077735395194	0.55073801503265	0.860762784243569
Merged-chr4-41506406-2	chr4	41505901	41506901	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253788, intron 4 of 5)	intron (NM_001253788, intron 4 of 5)	1363.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	2.81556651395412	2.47415125515132	2.97310848906165	2.34111282655179	2.49811882165574	2.75997772374835	-1.25135096151833	0.152157153674609	0.520117181947122
Merged-chr16-87440407-4	chr16	87439910	87440910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	CpG	182.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	7.44537349142149	7.73910955445205	7.66085964699914	7.79446356891913	7.76129123959548	7.28848459068875	0.0328700667801573	0.898465424761782	0.976355113798855
Merged-chr10-17774707-2	chr10	17774207	17775207	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21512.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	5.15145828186606	5.3440958705133	5.00225449389382	5.49042931645824	5.76827891613941	5.35144261832389	0.734977948154649	0.0438749393831948	0.263439598513268
Merged-chr4-132768690-1	chr4	132768190	132769190	+	699.0	f0_balb.idr	exon (NM_011284, exon 2 of 9)	exon (NM_011284, exon 2 of 9)	330.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	6.27223502198651	6.11689064307955	5.82231828882624	6.03821852466416	6.14929465440946	6.00982609095606	-0.0409305945421236	0.892943834163375	0.975146620821922
Merged-chr5-21188612-4	chr5	21188097	21189097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2330.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.78133317807705	7.7611583120755	7.5069753393404	7.49444403213154	7.7530588108777	7.32157855701887	-0.216205847590063	0.383760750781149	0.764993886451692
Merged-chr17-65680302-4	chr17	65679787	65680787	+	884.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-38083.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	3.16493021657943	3.38779396755412	3.33017906865452	3.07726524030644	3.19953534800386	3.17426050447003	-0.604568205485265	0.342272325250297	0.731283521951228
Merged-chr5-66152915-2	chr5	66152415	66153415	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-961.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.54752086729447	5.35667621165773	5.55122688710667	5.38387299554524	5.78112107256743	5.79468761359333	0.342821176400117	0.314523468347034	0.708849744947754
Merged-chr10-7726690-2	chr10	7726190	7727190	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	intron (NM_011835, intron 1 of 10)	690.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	7.0860900500993	7.04729073107015	7.00677132557975	7.32196487281576	7.32096987568953	7.22965077170296	0.368682272636258	0.111369603299753	0.445842768889385
Merged-chr7-126106696-2	chr7	126106196	126107196	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 21 of 23)	intron (NM_028816, intron 21 of 23)	-24285.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	2.26068435891527	2.3323502076876	2.48330880092372	2.25749754276772	2.12588582655631	2.55696096621794	-0.244876208652931	0.781532999642223	1
Merged-chr10-30770716-4	chr10	30770244	30771244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32582.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.42922968997485	5.66029172467718	5.6227766889614	5.51990041978319	5.25985980890739	5.20000427876859	-0.455690651711422	0.186307565259257	0.570803258887202
Merged-chr13-20159468-1	chr13	20158968	20159968	+	629.0	f1_balb.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	68961.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.17404508971334	3.01060577747692	3.04729800985132	2.86345608546088	2.89722896785524	3.06081594377246	-0.66230604921593	0.330118807731247	0.721722325304293
Merged-chr1-33904964-2	chr1	33904464	33905464	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	2657.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.29986938768961	5.39536846405901	5.66570355481087	5.36176633532329	5.22198775154473	5.67714459287027	-0.0627266096135599	0.862114345556038	0.967996224966109
Merged-chr6-128851860-2	chr6	128851363	128852363	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-25548.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.33869416953021	3.3968935588221	3.30917976979183	3.35664898599662	2.97219170122091	3.2069495827806	-0.683180710677492	0.292854538937155	0.690052968478542
Merged-chr10-88621533-4	chr10	88621033	88622033	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16381.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	4.95749540009988	5.34039477055666	4.93174755140578	4.98402173043202	5.24769674542364	5.07100951040033	0.0237366618485966	0.951318152302624	0.988761517628648
Merged-chr13-34187767-4	chr13	34187253	34188253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	24789.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	7.40784224404954	7.41966310218624	7.07352434781146	7.42812572570453	7.60174370522233	6.97465199470967	0.0828426938726435	0.766422824810175	0.942467872936068
Merged-chr9-57526372-2	chr9	57525872	57526872	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	5140.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	4.67751431906485	5.33432578339598	5.12568512799352	5.29916565867036	5.29119390278653	4.97581239694923	0.259449168126662	0.529996564714352	0.851070276054813
Merged-chr6-134863369-4	chr6	134862870	134863870	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24415.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	2.86727891335355	2.87831454993044	2.93442365565029	2.8909405225093	2.71159996051864	2.94761056287743	-0.219153092570727	0.755715636747885	0.939400440743942
Merged-chr16-45145340-4	chr16	45144859	45145859	+	913.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 5 of 6)	intron (NM_028756, intron 5 of 6)	13314.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	3.80642257835755	3.75349472139194	3.5733949359756	3.54316676810658	3.49149257024403	3.8984985070976	-0.24408438644185	0.669339176936278	0.909615408611738
Merged-chr10-22297435-3	chr10	22296943	22297943	+	953.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-9277.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	5.41294972218382	5.5059711438767	5.37256650322022	5.14549456321832	4.77533851689084	4.84446804864774	-1.04079034333736	0.0050326411100307	0.0615003673789741
Merged-chr4-129811090-4	chr4	129810577	129811577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9402.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	8.69300232869462	8.58270169261092	8.46800851267244	8.79215618997118	9.13126798063828	8.17830004148793	0.251215755737402	0.375393680610289	0.758646622209238
Merged-chr11-87127125-4	chr11	87126633	87127633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197987)	promoter-TSS (NM_197987)	58.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	6.94859751600005	7.12317661083814	6.73537824282917	6.7482875000148	6.89273035588984	6.57317004790744	-0.311148779675748	0.248895961691111	0.645870662882678
Merged-chr3-95588827-4	chr3	95588325	95589325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177669)	promoter-TSS (NM_001177669)	-109.0	NM_146133	229593.0	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	5.20122293346822	5.55766671513727	4.63290339361552	5.22812260399747	5.21770154015932	5.18678052958828	0.023160635997901	0.957329339965739	0.989964080281727
Merged-chr13-12575178-4	chr13	12574674	12575674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 2 of 15)	intron (NM_026184, intron 2 of 15)	9291.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	6.35794773326552	6.68239951795002	6.53261892411597	6.72636807342799	7.09411371288467	6.31941951232476	0.370294443305171	0.240725076533929	0.637793066855662
Merged-chr4-55350554-3	chr4	55350051	55351051	+	971.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	CpG	509.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	8.71008359092497	9.03548492465027	8.46037191527235	8.92746711450335	8.98549798787709	8.71618539150619	0.165702716012677	0.490561611751546	0.830091427684216
Merged-chr13-23697621-4	chr13	23697131	23698131	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178208)	TTS (NM_178208)	827.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	6.80733453614322	6.94389873311551	6.71570070663611	6.54220939535371	7.04772757648355	6.90971965697057	0.0389286051991255	0.888272203732942	0.97401529899353
Merged-chr19-29414661-4	chr19	29414151	29415151	+	985.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	3732.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	3.82171687706128	3.61008234456899	3.62090257351255	3.79296547751124	3.41179616312547	3.74449596794468	-0.121289064319164	0.832505173473955	0.960616839788396
Merged-chr1-53782518-4	chr1	53782003	53783003	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	2712.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	6.76555685235058	6.8716676579006	6.53956506180413	6.69013959086271	6.92217989472094	7.10151467904602	0.263351350771588	0.333343448191953	0.724286391143082
Merged-chr16-33832102-3	chr16	33831605	33832605	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	2440.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.7825215533684	6.38877147294293	6.19322388538307	6.10401859522853	6.42504772237639	5.85717894831191	0.0247578681946643	0.942736936012278	0.987202156853573
Merged-chr10-93310316-4	chr10	93309806	93310806	+	820.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 1 of 4)	CpG	853.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	6.36752669144671	6.28338061575299	6.53510212187684	5.47791141960534	5.34679165931406	5.54707265298186	-1.67281928460508	5.04042807306216e-08	3.91966298227436e-06
Merged-chr17-80223960-2	chr17	80223460	80224460	+	870.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355458)	promoter-TSS (NM_001355458)	-491.0	NM_026053	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	4.84605629737693	4.83832924701392	4.68634408128708	4.72885754380783	5.13396093977054	4.6258598277461	0.153733346402057	0.715170126440484	0.926307958669715
Merged-chr16-4199433-3	chr16	4198935	4199935	+	712.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	13969.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	6.05508581866634	6.17272241169802	5.68404650188282	6.15547722239234	6.55921622586733	5.71676226880596	0.364834222057759	0.320664423421635	0.714486534537161
Merged-chr7-142395624-2	chr7	142395124	142396124	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7754.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.32172026736681	5.33234324542946	5.03929298576156	5.28212461513279	5.43931297556807	5.2459286004422	0.166238496207817	0.640359187619433	0.898468596960034
Merged-chr8-120709366-4	chr8	120708844	120709844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27014.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.46148524155366	3.0418632816307	3.16952383055013	3.69487592050246	3.40913664516252	3.58934887565272	1.24789691725579	0.0559860688819423	0.304655602611252
Merged-chr16-4584110-2	chr16	4583610	4584610	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-10603.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	3.20010250395472	3.22345586726265	3.13534313793852	3.05287414197568	3.26138043701025	3.26495876790228	0.0350879263938042	0.956103693244136	0.989807313282509
Merged-chr8-70610280-4	chr8	70609769	70610769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1955.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	8.74450767632222	8.8388585029642	8.15887247339269	8.37145948322058	8.57441021470591	8.04322587712618	-0.369845594626846	0.179578558389399	0.56110368604883
Merged-chr13-41552096-4	chr13	41551621	41552621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54095.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	7.90335357226538	7.97503522059484	7.73552066078503	7.87109239620874	8.09522198222366	7.81801884165553	0.08529994404302	0.706841177149548	0.923161381966479
Merged-chr6-48048738-6	chr6	48048301	48049301	+	893.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081382)	promoter-TSS (NM_001081382)	-687.0	NM_001081382	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	3.00240640305542	3.03677803834235	3.36551106578203	3.12419424748229	2.64610029475755	2.86497678037791	-1.14659216571165	0.131890452502586	0.485670379921012
Merged-chr7-28335813-2	chr7	28335313	28336313	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013676, intron 2 of 29)	intron (NM_013676, intron 2 of 29)	2906.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	2.77056424026329	2.63191913281293	2.76549614930851	2.63615991041968	2.43078328532042	2.77826928409829	-0.590213546938826	0.4497734962605	0.808012616706586
Merged-chr13-23621713-4	chr13	23621216	23622216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-592.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	7.99914692993018	8.26902631104572	8.19376694247032	8.14137625478591	8.55001520400959	8.54165630297088	0.373361643048146	0.112022734657104	0.447037921699118
Merged-chr2-84715708-4	chr2	84715216	84716216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-552.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	7.34442316898277	7.32721908213084	7.46847201164342	7.64190652717889	7.86409925250691	7.46326281640893	0.434715240344458	0.0691013316666059	0.34395473619309
Merged-chr16-20496810-4	chr16	20496290	20497290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	4.76632409078644	5.0686521709145	5.17809532157774	5.07427314677301	5.26228170261999	4.89175189533794	0.184144930887249	0.639988476361214	0.898255496259518
Merged-chr19-6341131-4	chr19	6340657	6341657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-3.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	6.17247797549621	6.26696815083993	6.40299030035983	6.3727367304206	6.46642433460491	5.89386894911986	0.00580181377948617	0.985022935899179	0.996871628824224
Merged-chr12-71136566-4	chr12	71136086	71137086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029818)	promoter-TSS (NM_029818)	89.0	NM_001024853	30056.0	Mm.207767	NM_013896	ENSMUSG00000021079	Timm9	2810011L15Rik|Tim10a|Timm10	translocase of inner mitochondrial membrane 9	protein-coding	6.62847860689289	6.96068609626758	6.53648940207	7.11883739687283	7.06277412162146	6.54010226838316	0.328877907953786	0.271151046352852	0.668377504930579
Merged-chr7-143057365-3	chr7	143056897	143057897	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3711.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	4.90401880180106	5.03201705603832	5.21697244315815	5.20420224802889	5.09365597805703	5.53498253853179	0.474431257256885	0.211131778403094	0.603517854383822
Merged-chr4-129058084-4	chr4	129057585	129058585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029219)	promoter-TSS (NM_029219)	-186.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.27968482656518	6.38861395793813	6.66604540788401	7.16603545030976	6.56356793874325	6.39147042427833	-0.130195656166321	0.723277810453647	0.929000340406704
Merged-chr8-88647211-4	chr8	88646680	88647680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-167.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.86991720940523	7.00091827597334	7.00274371361846	6.23947003115117	6.04792430186459	6.27666353245934	-1.24413091050918	2.64554176100393e-06	0.000127242912629836
Merged-chr9-123989853-4	chr9	123989349	123990349	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11441.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	5.99473937275279	6.02979708084689	6.17444777432667	5.6403685748289	6.00802848078799	5.60770751618979	-0.496479187270655	0.122040547344524	0.467328442243354
Merged-chr9-113743421-4	chr9	113742900	113743900	+	995.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1927.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.95408337958204	4.94145488677539	4.54977325587434	5.23033591858854	4.94265187862697	5.09501764344148	0.539906152392374	0.181800590790274	0.564386955134767
Merged-chr19-61017693-4	chr19	61017211	61018211	+	911.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	123129.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.43585247531945	3.39328402777888	3.48639685319648	3.08081489356626	3.17756496410036	3.16556199183004	-1.21724112657182	0.052954355474787	0.294812315398945
Merged-chr3-53463244-4	chr3	53462751	53463751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	7.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	8.68895639922409	9.05694383179961	8.60990794813194	8.77304267689507	8.96578457764291	8.60281175018456	-0.015985218247504	0.946089592339146	0.98796006280508
Merged-chr18-34651800-4	chr18	34651309	34652309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178347)	promoter-TSS (NM_178347)	-73.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	5.26632265604279	5.34767726814903	5.09817459137502	4.96080425013334	4.99600369953981	5.46884327834107	-0.201025394893738	0.600479843349174	0.881684892224841
Merged-chr5-34539309-2	chr5	34538809	34539809	+	615.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-4056.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	4.37479206386625	4.41716064257716	5.23591934883992	4.68819283031239	4.30812129311395	4.5800614366714	-0.468665174125025	0.356531251150584	0.743333039419324
Merged-chr4-142079902-4	chr4	142079391	142080391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-4407.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	6.7786768424319	6.67536713960509	6.81900986079412	7.0055786299309	6.99545459309839	6.40852144456614	0.137194214457202	0.633568141475354	0.896059441151508
Merged-chr4-132261051-4	chr4	132260541	132261541	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 1 of 10)	CpG	508.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	7.10379684828353	7.29687336036708	7.43858366539491	7.66095251084267	7.58280764665968	7.67567242025873	0.525243821488009	0.0248279160933547	0.186241342074116
Merged-chr2-5014824-4	chr2	5014317	5015317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2026.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	4.93679897656566	5.26446249740345	5.5078165041934	5.59030615064089	5.78206661977857	5.82451395384418	0.937082345941035	0.00902547496696463	0.0937801849464526
Merged-chr6-137702906-1	chr6	137702406	137703406	+	637.0	f0_balb.idr	Intergenic	Intergenic	-32176.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	3.35322411082318	3.0373676174583	3.1062812240762	2.91961058719108	2.9503067139666	3.12005248398576	-0.809686511386534	0.233879770359515	0.630121355137759
Merged-chr3-127896078-8	chr3	127895580	127896580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027482, exon 1 of 2)	exon (NM_027482, exon 1 of 2)	243.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	6.26807997371296	6.18331017047042	6.22560053481475	6.22683106936691	6.06583427351768	6.22459590104982	-0.0960877710728312	0.730738491519886	0.931066356364546
Merged-chr3-9697425-2	chr3	9696925	9697925	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-87340.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.78252930172934	2.76048657988275	2.77863746898594	2.55267421743019	2.5094966493944	2.72976911870295	-1.01110734113662	0.184461104435845	1
Merged-chr17-31093578-3	chr17	31093079	31094079	+	582.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 3 of 14)	intron (NM_009593, intron 3 of 14)	35885.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.65835774326541	3.58858202485137	3.8229936588455	3.35273606525221	3.3356726516061	3.84457482954853	-0.583906657684982	0.335014359209474	0.725339338581532
Merged-chr5-130454562-1	chr5	130454062	130455062	+	586.5	f0_balb.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	5770.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.08264144235856	3.26251172544158	3.39885936380178	3.18061445721871	3.27958545742406	3.25023197334483	-0.0431794244240079	0.945547215724974	0.987909250703712
Merged-chr7-99148113-2	chr7	99147613	99148613	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6969.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.69745187794173	4.10271018596734	4.65654012869075	5.0343667739727	4.95319667148636	5.14665505910078	1.2234389827898	0.0065107647117985	0.0741409210536923
Merged-chr7-139400012-2	chr7	139399512	139400512	+	648.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-482.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.21720621514951	3.21226103339114	3.34413440310769	3.12850475170397	3.07008869523046	3.0725153539619	-0.713038099326758	0.264389380826997	0.662276944757498
Merged-chr6-32479331-4	chr6	32478846	32479846	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31795.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	7.29769151751437	7.46162042150627	6.84074905886298	7.18020777166286	7.43013739318174	6.73278014776879	-0.115323471759608	0.709704276889693	0.924032569810314
Merged-chr19-3376199-4	chr19	3375732	3376732	+	887.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 13 of 18)	Lx8|LINE|L1	-12625.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	6.02069521077931	6.53983929244997	6.56874127678368	6.60332738101403	6.65841026600033	6.59449119664927	0.361514761761694	0.222616126753253	0.61759219400809
Merged-chr17-32506308-4	chr17	32505729	32506729	+	871.244019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101445)	promoter-TSS (NM_001101445)	-233.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	4.485340054708	4.68790177252848	4.43922556493924	4.32570276187825	4.45932365799723	4.12952736323505	-0.576369051052932	0.208457827824446	0.599337828187015
Merged-chr4-140701319-4	chr4	140700843	140701843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-130.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	6.25915722573876	6.69864168785799	6.63452967305993	6.51445013730516	6.72752832730051	6.41172527306199	0.0370882036507235	0.898478922129144	0.976357030109595
Merged-chr4-145229968-2	chr4	145229468	145230468	+	695.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	16902.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.68198369237832	5.92357090710791	6.18542630959405	5.80756453749385	5.67242368362929	5.83337604227093	-0.299800987931793	0.354443443945134	0.74162462962729
Merged-chr13-81657681-4	chr13	81657185	81658185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-121.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	7.98464266783874	7.9444651917401	7.62249843578926	7.83389466575842	7.86799436781403	7.40528308064178	-0.19889640235164	0.435043876689723	0.798753078814766
Merged-chr3-105036514-4	chr3	105036037	105037037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 2 of 5)	intron (NM_030249, intron 2 of 5)	16416.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.79546575708052	5.81520706566301	5.90413265738093	5.83288561263897	5.78426313110851	6.0972080353016	0.117169525378805	0.702555249066241	0.921908665861083
Merged-chr11-69516344-2	chr11	69515844	69516844	+	731.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 9 of 85)	intron (NM_001081330, intron 9 of 85)	32764.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	4.3113886842304	4.22807926644933	4.35933674412353	4.25766611299977	4.48373452070545	4.54999330121829	0.358682437138508	0.422666377545878	0.791448507539156
Merged-chr1-87607825-4	chr1	87607303	87608303	+	725.9940190000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12509.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	3.45350523909513	3.78674009250619	3.43358761350766	3.35752087942885	3.16765842205088	3.33261711498704	-1.11869004636057	0.0714711757520068	0.350688382590694
Merged-chr2-5842938-2	chr2	5842438	5843438	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 1 of 12)	Lx8|LINE|L1	-2096.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	2.1629684137924	2.06004347959521	2.18162548526049	2.25780001487595	2.18898806655528	2.44976581718381	1.17039165169771	0.187125482443229	1
Merged-chr17-80563919-4	chr17	80563409	80564409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-75.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	8.07487544047444	8.24732621094164	7.66904044701846	7.71319244786414	8.13897819656252	7.50144485447347	-0.289131235918721	0.309174643862131	0.704802606494279
Merged-chr6-47587308-3	chr6	47586860	47587860	+	568.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007971, intron 1 of 19)	B2_Mm1a|SINE|B2	7670.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	2.53048509238434	2.57036270895726	2.6113419914976	2.8047344197201	2.88074628578859	2.87283626003038	1.58671790159153	0.0359367664927535	0.23304274771801
Merged-chr8-71311729-2	chr8	71311268	71312268	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	MT2B|LTR|ERVL	39054.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	3.81816135396041	4.20751229838805	4.27178646895986	4.05379346370369	3.81570716462037	4.12023821693209	-0.332424236064386	0.523659074733493	0.848362770949337
Merged-chr11-77800199-2	chr11	77799699	77800699	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-1099.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	3.81282401767822	3.40251554515935	4.03285508290742	3.38247427438986	3.41428778555682	3.83276518517897	-0.732111424002636	0.243127551410468	0.640367862483409
Merged-chr6-122601387-1	chr6	122600887	122601887	+	722.0	f1_balb.idr	intron (NM_001134391, intron 1 of 7)	intron (NM_001134391, intron 1 of 7)	1057.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.31602723622685	7.36880194728395	6.79781806030656	7.9073872623366	8.07701390237029	7.46370166780804	0.949548503710845	0.00114391709890901	0.0200006417243163
Merged-chr3-96268654-4	chr3	96268159	96269159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	5.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	7.01067136118001	7.18951838808503	7.23118935756506	7.06113486993462	7.28110950037314	7.2541279357109	0.0890383811520444	0.713627519809858	0.92557476402444
Merged-chr6-47319761-3	chr6	47319257	47320257	+	917.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75361.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.68708001313187	4.24816364333775	3.72811239810253	3.94459778220317	3.79918349963803	3.905878767995	-0.126696970126634	0.821137047968209	0.957942312428027
Merged-chr6-13679505-2	chr6	13679005	13680005	+	739.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1539.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	4.37405744762163	4.52521696057508	4.86212203519219	4.85590585699556	4.6683482475249	5.05865225870487	0.628806039728047	0.147653660013161	0.51270566049222
Merged-chr4-155491278-4	chr4	155490798	155491798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-63.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	9.01107480194819	8.71084011077614	8.67540069056812	8.82755559049742	8.65693143213965	8.74948970111473	-0.0901473857450407	0.674635852392085	0.911852710156386
Merged-chr12-3982046-2	chr12	3981546	3982546	+	916.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001082483, exon 9 of 23)	exon (NM_001082483, exon 9 of 23)	27101.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	3.72687168283074	3.25078924338893	3.45221744417863	3.36363132226708	3.1048535917522	3.35585574115347	-0.845439820886195	0.188889435236753	0.574392870927155
Merged-chr17-73941966-4	chr17	73941452	73942452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8244.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	8.76438550180019	9.05242530729414	7.96774330560706	8.42131961183595	8.82728958115883	7.79894735368755	-0.351603421931338	0.547003956573825	0.859168905101902
Merged-chr8-14894743-2	chr8	14894267	14895267	+	685.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012000, exon 2 of 3)	exon (NM_012000, exon 2 of 3)	6231.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.69651523857069	3.51957140190463	3.94183628142562	3.36623982947276	3.46905973078087	4.17612424550927	-0.0282080814273322	0.965181181904752	0.991834162228062
Merged-chr3-65943983-1	chr3	65943483	65944483	+	553.0	f0_balb.idr	Intergenic	Intergenic	14266.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.22250842067799	4.49750962777294	4.26921601472483	4.51707956193236	4.25592150392185	4.4263294717389	0.154429163105565	0.735449757723323	0.932744628746236
Merged-chr6-108186454-2	chr6	108185954	108186954	+	622.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145937)	promoter-TSS (NM_145937)	-871.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	3.22029999426719	3.23146165744752	3.40803324366144	3.37344609247263	3.46661949551177	3.63365909171434	0.805166376212641	0.181316281100037	0.563652213858344
Merged-chr10-19504099-3	chr10	19503615	19504615	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152785, intron 1 of 2)	intron (NR_152785, intron 1 of 2)	9472.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	4.40208469421778	4.43444501274385	4.80718874211237	4.47689984726528	4.25190385038453	4.76702950069855	-0.11641661527175	0.802327122745497	0.953197339007501
Merged-chr14-40933331-6	chr14	40932833	40933833	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	14876.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.99046678067101	5.78271618065098	5.87094506069388	5.44804034285023	5.60321146753345	5.53676313044409	-0.641047065776724	0.0424460577953288	0.258213170908409
Merged-chr19-53391957-2	chr19	53391457	53392457	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-1323.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.23964677956569	3.15618312192111	3.43390394990183	3.41110136480969	3.067167078487	3.39793638571739	0.0806138676797792	0.900154822168058	0.976728292075907
Merged-chr13-41596890-4	chr13	41596405	41597405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9311.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.06918799578594	6.01476440943684	6.21064764132246	6.03495658036866	6.40910326409777	6.25061231624439	0.256852395846332	0.383567085840624	0.76494131641868
Merged-chr5-33996510-3	chr5	33995994	33996994	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001985, exon 1 of 3)	5' UTR (NM_001001985, exon 1 of 3)	510.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	3.53775450417172	3.69014261597205	3.70338681960865	3.04532463055198	2.96795994845284	2.97493485262199	-2.95188497681633	4.80261508006106e-05	0.00152816824314234
Merged-chr2-84113817-4	chr2	84113321	84114321	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172595.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	2.97216144321673	3.19417245622278	3.01249984164318	2.73281086143052	3.05332454585832	2.83742542213711	-0.827192271947699	0.259704336259998	0.657262558900234
Merged-chr11-62602068-2	chr11	62601568	62602568	+	805.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	-809.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	4.79566392770273	5.10680686007071	5.30813128400458	4.58022898506911	5.04935749125082	4.64258248781047	-0.636221877803237	0.144619840727659	0.507465428552567
Merged-chr14-101607972-4	chr14	101607445	101608445	+	730.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	CpG	1246.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.14738205928521	3.17526667514174	3.04786261994763	3.27638144214074	3.00714900494433	3.29594457772708	0.283442676598788	0.66512243099945	0.907746805514405
Merged-chr5-115538841-4	chr5	115538335	115539335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-20632.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	6.29734907036677	6.31180622117141	6.68933465367509	6.5928223353014	6.84634529851229	6.40438164511456	0.325487708671272	0.269474040227955	0.666576488680077
Merged-chr14-46767534-4	chr14	46767030	46768030	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360041, intron 5 of 7)	intron (NM_001360041, intron 5 of 7)	6989.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	5.34868171426503	5.19637267386379	5.60045469456668	4.97343890136535	4.66944625495082	5.21879967564218	-0.88313723127952	0.0261436471967216	0.191983107929116
Merged-chr17-13441119-5	chr17	13440721	13441721	+	917.55835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-80235.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	3.65139840241265	4.03805093490482	3.66544224130334	3.14605060973685	3.33360357516607	3.27842539355176	-2.06276251220593	0.0013770635404964	0.0231519354109056
Merged-chr18-50037295-2	chr18	50036790	50037790	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	6306.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.94620737134761	4.78315615257627	4.9839563271282	4.64611512971225	4.61685948661825	4.59515560509717	-0.65240314010424	0.101812054700534	0.425710869100299
Merged-chr15-38659787-2	chr15	38659287	38660287	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-2117.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.15258751233766	4.20295896992848	4.06673982683309	4.10089237393248	3.71651923026431	4.18177415551274	-0.406509196731706	0.428383825902215	0.795255932034972
Merged-chr3-95311231-4	chr3	95310724	95311724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3966.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	3.81319637392608	3.56751524360346	3.46674424139247	3.52133572966195	3.48687279539113	3.36196405942199	-0.602879330461154	0.306942024149777	0.703099001056797
Merged-chr19-55803302-4	chr19	55802787	55803787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	61477.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.55841046369855	4.32535071627611	4.46263462505145	4.41728699279592	4.16605756738713	4.06345012935315	-0.590608128917522	0.205651797040281	0.596191022511591
Merged-chr3-83845368-4	chr3	83844862	83845862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3754.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	6.05420967521806	5.87336222494421	5.92011763086524	5.63617308590765	5.81835093145151	5.83614691964741	-0.331826981712731	0.276603260676384	0.674003097641857
Merged-chr2-75732150-3	chr2	75731657	75732657	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27494.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.26082852142165	7.14207492085094	6.99366952243653	7.19778870987923	7.42066552356421	7.24427464896545	0.228690728058376	0.347338192930815	0.735477309583349
Merged-chr11-115626897-2	chr11	115626397	115627397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252395, intron 1 of 7)	B1_Mus1|SINE|Alu	1398.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	3.0714027751846	3.02574608838925	3.03990528603219	3.4448181943058	3.25159988301291	3.56252587787509	1.57643854116654	0.0155328980714277	0.136005617460523
Merged-chr4-155481982-2	chr4	155481489	155482489	+	596.833374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-9372.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	4.80389939087165	4.70644384785046	5.05345702199557	4.7379285305836	4.63654240493466	5.02026095377796	-0.129390016778757	0.753443332549431	0.938549578325581
Merged-chr11-19965465-4	chr11	19964973	19965973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41031.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.15028291359474	4.75795941879897	4.81761006174078	4.89228947722889	4.49104986579159	4.88341204789381	-0.370905957803316	0.382543883800121	0.764107846408276
Merged-chr15-73643198-4	chr15	73642717	73643717	+	714.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18473.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.61072867150352	4.71569901833432	4.58352711190833	4.97620642328493	4.99048607101041	4.81493383878424	0.668035607617162	0.0905449748962014	0.400258527926639
Merged-chr2-117299113-4	chr2	117298631	117299631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	43746.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.75507209633357	6.48046421384207	6.87791140762217	6.94208473880692	7.38132116499915	6.95042006085995	0.629011667774193	0.0259649262532672	0.191090841293208
Merged-chr7-24886055-3	chr7	24885552	24886552	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360125, intron 3 of 5)	intron (NM_001360125, intron 3 of 5)	1139.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	4.44309133209467	4.42312059841062	5.02186305056894	4.89745384330429	4.8217197660225	4.69555490531426	0.382306567112258	0.390255393343598	0.769547406615622
Merged-chr10-118105115-1	chr10	118104615	118105615	+	542.0	f1_balb.idr	Intergenic	Intergenic	-36672.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.15446532527733	5.01766642453846	5.23695436599646	5.27300526072552	5.25921167764309	5.6103799067344	0.497689260720838	0.168383639094204	0.544915441885131
Merged-chr17-17837397-2	chr17	17836897	17837897	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 4 of 8)	intron (NM_001162909, intron 4 of 8)	6422.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	6.04825801497285	5.96386201929538	5.48099896418721	5.26513174256575	5.31471931000139	5.54481246103352	-0.920375493401502	0.00870633011246184	0.0914733024982414
Merged-chr19-43527304-4	chr19	43526763	43527763	+	915.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2658.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	3.14465287930305	3.03522110043752	3.22214228193249	3.19602435291452	3.1501300845082	3.17956785400051	0.183535062713098	0.772984289037301	0.943954628583841
Merged-chr11-115766072-3	chr11	115765598	115766598	+	820.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028014, intron 1 of 31)	intron (NM_028014, intron 1 of 31)	665.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	5.84339689844437	6.03534008416367	6.38952963814495	5.56861227681354	5.80466341393869	5.65476274305381	-0.730719827138007	0.0278876248140108	0.199404785213046
Merged-chr1-177521297-3	chr1	177520798	177521798	+	778.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75477.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	3.05638699560205	3.27159343537677	3.16904410382394	3.19881664305972	3.19673824499132	3.06150074827373	-0.0533111882223533	0.934321915592521	0.985707838096286
Merged-chr4-33073164-4	chr4	33072659	33073659	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008076, intron 2 of 8)	B2_Mm2|SINE|B2	10047.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	2.55338484078841	2.48333974927234	2.59757763344089	2.83886669503538	2.68426591809264	3.03241227389302	1.7319467948133	0.0269055437195931	0.195336585815708
Merged-chr3-95667453-4	chr3	95666983	95667983	+	951.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	8762.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.59048026982337	7.64765473262759	7.48910591494247	7.63596010571065	7.9018363639855	7.57623051924302	0.201811118525394	0.386825725283554	0.767242114725069
Merged-chr7-101378078-4	chr7	101377580	101378580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040112)	promoter-TSS (NM_001040112)	-42.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	7.23441927070313	7.13632709870423	7.1640836863084	7.28359324025108	7.52361150664078	7.56496944387191	0.419597226452721	0.0758044334489657	0.362539808419832
Merged-chr10-98614135-1	chr10	98613635	98614635	+	544.0	f1_balb.idr	Intergenic	Intergenic	-262268.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	1.85999391723955	1.91857398074981	1.99440302268971	2.07744397530057	1.92105853464492	2.26747919476673	1.34371553979461	0.164759176420643	1
Merged-chr19-4150542-2	chr19	4150042	4151042	+	653.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011778, exon 5 of 11)	exon (NM_011778, exon 5 of 11)	1879.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	3.98377903485413	3.95926389369579	4.41582228547739	4.01011811335378	4.0319811915957	4.4425284919223	0.116479416087896	0.822319730795395	0.958041123079214
Merged-chr13-98947397-1	chr13	98946897	98947897	+	792.0	f0_balb.idr	Intergenic	Intergenic	-21013.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.38035890158801	5.46040849942944	5.19699564249972	5.21525497179853	4.9689098324119	4.89497491317901	-0.657184548778063	0.0738715903505461	0.357283613687993
Merged-chr2-167351620-4	chr2	167351139	167352139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2461.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.22569049379961	7.06637867636091	6.83468206046087	7.25934272478677	7.36174120670775	6.60119925939793	0.106452739779729	0.727084043734645	0.930106435835116
Merged-chr15-98676710-2	chr15	98676210	98677210	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172612, intron 1 of 4)	intron (NM_172612, intron 1 of 4)	751.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	4.01973458545676	3.66449263162951	4.04344879758643	4.28368913755139	4.3012246155528	3.9099069994489	0.780297492872423	0.138822500072417	0.497765344567168
Merged-chr7-29768024-2	chr7	29767524	29768524	+	905.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-528.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	6.3435591139426	6.96189389283111	6.98300549164553	6.77303587230742	7.06711538049509	6.98840764776491	0.242890366133338	0.419262427285808	0.788900930544255
Merged-chr3-89908206-2	chr3	89907706	89908706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4990.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	4.96284434604493	4.90250790952288	4.86541738154238	4.69663290545464	4.81562386332805	4.85630934733552	-0.276935495816914	0.472194934435862	0.8205191831757
Merged-chr12-111945987-2	chr12	111945487	111946487	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	4.00755830758242	4.08895155823154	4.32948397381031	4.00758737947119	3.93378988751806	4.43269620088315	-0.0280703132390876	0.956265677328803	0.989835972422748
Merged-chr13-95881592-2	chr13	95881099	95882099	+	679.666626	f0_balb.idr|f1_balb.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	10323.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.15915568322691	3.20808426238863	3.3131139085832	3.00857709955902	3.01547076153858	3.1030318491517	-0.816528376962065	0.208167546994699	0.599041414336639
Merged-chr9-78448668-2	chr9	78448168	78449168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 1 of 11)	CpG	458.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	7.70043570024057	7.90092181487333	7.83335402948043	7.68629844335672	7.57098062075621	7.59067858361262	-0.285078483481641	0.196101126089094	0.583882577099452
Merged-chr1-34481008-4	chr1	34480494	34481494	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17418.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	5.70962890300569	5.66025865621953	5.89187871134682	5.95764589222188	6.21068028065644	6.25162022634625	0.693941007386737	0.0223827889696286	0.173863620666995
Merged-chr18-76930863-2	chr18	76930334	76931334	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	807.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	5.12808980946656	4.62469206273463	5.36537028631056	5.25836766472052	5.00802504527835	5.28250513583646	0.244572308538816	0.55917517768398	0.864901733108576
Merged-chr11-54627157-4	chr11	54626658	54627658	+	872.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	31012.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	7.05498284044105	7.0813391373472	6.9066380722678	7.01699754965602	7.54664243483855	6.93564171346551	0.285782947683624	0.31231384758988	0.707122889610482
Merged-chr19-10847042-2	chr19	10846542	10847542	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	ID4|SINE|ID	4498.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	4.11249654059075	3.56063921253933	3.68439400821717	3.80064412239881	4.09455023568745	3.70063549121198	0.213884626742872	0.715370669425823	0.926392907650078
Merged-chr10-127581831-2	chr10	127581331	127582331	+	986.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 20 of 89)	exon (NM_008512, exon 20 of 89)	39317.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.53703316757924	3.29453283919862	4.00353953981969	3.56319121747729	3.03725774347345	3.80686470738979	-0.450844268983119	0.526617460247084	0.849575940031528
Merged-chr14-75172471-2	chr14	75171971	75172971	+	808.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	36046.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	3.26827640408015	3.06696488180913	3.3238767080049	3.44307519274177	3.30808490433004	3.28185214478662	0.514819960900378	0.409701721696817	0.783037110673669
Merged-chr1-152543990-2	chr1	152543490	152544490	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	81227.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.05494492101232	4.20019406962331	4.65064192655702	3.94307081526719	3.88778298133295	4.57415815297985	-0.413884728414133	0.455441042849123	0.810928586858913
Merged-chr14-21742039-4	chr14	21741560	21742560	+	910.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007268, intron 5 of 7)	intron (NM_001007268, intron 5 of 7)	819.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	2.23477614820961	2.13318958878558	2.14727449270986	2.38280463894536	2.22286424137381	2.42205534974365	1.16971203136823	0.181915589584223	1
Merged-chr17-63871859-4	chr17	63871332	63872332	+	874.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	RMER1B|Other|Other	-6234.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.23907822439303	5.37138491373753	5.36438261968112	5.38155524950713	5.66180436020662	5.59983761380288	0.446914088069693	0.185333600298856	0.569470877644115
Merged-chr11-3173306-1	chr11	3172806	3173806	+	1000.0	f1_balb.idr	intron (NM_030207, intron 6 of 32)	B1_Mur2|SINE|Alu	20157.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	8.14000480498916	8.42549098255008	8.68076691952953	6.44122428728162	6.05397735562907	8.29733635908033	-1.47256081302967	0.151471465516665	0.518929380900567
Merged-chr13-102686497-2	chr13	102685997	102686997	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-7050.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.20256394314396	4.72893208591949	5.07420472392875	5.12097349110082	4.82117348926769	5.56923862991171	0.375304851407284	0.385170869115092	0.766242799228034
Merged-chr5-143037286-1	chr5	143036786	143037786	+	553.0	f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	75734.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	2.82898502760356	3.00292984881976	3.15157151914271	2.99171296330994	2.96428752008854	3.05284061531944	0.0253440779776138	0.970363896752501	0.993454328038643
Merged-chr9-25487058-2	chr9	25486558	25487558	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	5461.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	2.69865694286576	2.65352294105112	2.7553041842177	2.95347808038562	2.45642693323522	2.42891418141434	-0.338746523075046	0.689097789049181	1
Merged-chr12-91748381-4	chr12	91747889	91748889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38047.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.75275143328603	7.55988650324072	7.43690997522211	7.17203847837948	7.51296622331925	7.29428160071401	-0.372553280496379	0.131699639742471	0.485295762972922
Merged-chr15-51848620-4	chr15	51848119	51849119	+	638.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080635, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16842.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.26602530853623	3.15002969256413	3.55131997323504	3.31464608282243	3.20061278856675	3.71644558944585	0.362744533051651	0.577647337727029	0.872189231230624
Merged-chr3-103912896-2	chr3	103912388	103913388	+	731.25	f0_balb.idr|f1_balb.idr	TTS (NM_008979)	TTS (NM_008979)	-1232.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	3.33684241177252	3.36262156380399	3.42930901015156	3.57671496653658	3.46480355440166	3.32917540011243	0.341971723661345	0.562884411020835	0.865755360453189
Merged-chr19-12441678-3	chr19	12441186	12442186	+	978.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13781.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.04650472002162	7.05058379019428	7.11156537875733	7.79900569613786	7.91162334346509	7.63840506269565	1.06751406398348	3.29316216950487e-06	0.000154028913884295
Merged-chr3-136671076-9	chr3	136670492	136671492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	CpG	926.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	7.12772171779053	7.36089083461343	7.28645129460725	7.34999144187774	7.22771600016542	7.04629963722531	-0.0637726395712279	0.794131269318349	0.950572181969693
Merged-chr17-46388429-4	chr17	46387923	46388923	+	927.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021346, intron 2 of 7)	intron (NM_021346, intron 2 of 7)	4657.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	4.04122654946069	3.96767217486888	4.19548595276197	4.23981219774228	4.2945887090928	4.3924486706728	0.6797558310881	0.146383269438157	0.510331229700642
Merged-chr6-83649927-2	chr6	83649427	83650427	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6189.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.17767803791227	7.08290056036751	6.9019828288896	6.62486836283244	6.73020143886905	6.30458342603974	-0.326495840929091	0.342770252273862	0.731651201867618
Merged-chr10-128484242-2	chr10	128483742	128484742	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 23 of 27)	intron (NM_001114097, intron 23 of 27)	8767.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	3.5189694843892	3.65833625140361	3.91473947511593	3.56478761323034	3.08690940652791	3.84625969147698	-0.577136456237166	0.388345724876306	0.768214408180843
Merged-chr6-134119447-2	chr6	134118915	134119915	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	Lx8|LINE|L1	83715.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.0831634920925	3.48424714009347	3.8807895344619	4.36284191230148	3.90302136190311	4.44518240059218	1.18872536833411	0.040618227681216	0.251302066242741
Merged-chr6-85587525-4	chr6	85586973	85587973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145223)	promoter-TSS (NM_145223)	-58.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	5.32260223799513	5.55637532337001	5.75944961761866	5.87081132367435	5.54886319531751	5.66760518163093	0.281803532290784	0.408567139329541	0.782163677806636
Merged-chr11-114990880-1	chr11	114990380	114991380	+	548.0	f1_balb.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-994.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	4.34055854214837	3.85959756495268	4.43840532833937	4.17048555273228	4.09174033695267	4.16251844724126	-0.249481248959402	0.623404367788127	0.891419753943245
Merged-chr7-25121275-2	chr7	25120775	25121775	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	11185.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	6.12833443885287	5.86412229769252	6.28471985606947	6.43259578906237	6.18459907078926	6.572245928561	0.505790276837324	0.0969612813398743	0.415210452253011
Merged-chr8-125012944-4	chr8	125012383	125013383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016909)	promoter-TSS (NM_016909)	-114.0	NM_016909	53424.0	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	5.43849042795438	5.29882657381361	5.69767521998207	5.37045452064025	5.52259798474917	5.65821294258426	0.0778729321281818	0.82126445533321	0.957942312428027
Merged-chr6-120150078-2	chr6	120149578	120150578	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43745.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.62502930035148	4.73428049569001	4.41204658035096	4.20603732711422	4.30088680385845	4.39098094967679	-0.783681036692633	0.0771634045738327	0.366166009591856
Merged-chr5-38483264-2	chr5	38482764	38483764	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	121.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	2.87562729274324	2.70416435454517	2.75276354686842	2.79044366493989	2.6257220961515	3.06162727408172	0.260636823351016	0.728069050489834	0.930391495870939
Merged-chr4-108579342-4	chr4	108578852	108579852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	-16.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	7.25114692569595	7.78452817196599	7.28246329678155	7.29463611369845	7.64171894996075	7.24399868692476	-0.0841323912179924	0.764285676239617	0.941975982766709
Merged-chr12-108931643-4	chr12	108931142	108932142	+	842.9375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	37370.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	3.76071530885254	3.87675821984178	3.92417476202932	3.58277666842567	3.27880948830163	3.64583234085225	-1.22878118848269	0.033802147585008	0.224828864608581
Merged-chr6-88517816-2	chr6	88517316	88518316	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016906, intron 2 of 11)	intron (NM_016906, intron 2 of 11)	984.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	4.40165851477141	4.33460166299007	4.4327425728124	4.51984306745596	4.4097920399408	4.36883788324219	0.124366579341722	0.774557466047163	0.944477929413368
Merged-chr17-10319306-4	chr17	10318816	10319816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	45.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	6.95155558093438	6.69640327632682	6.62336981987437	6.81063657375692	6.46292992740512	6.50571003713079	-0.264123204104549	0.342306677188539	0.731283521951228
Merged-chr11-83562440-3	chr11	83561918	83562918	+	879.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16218.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	3.76898218014168	3.60159354012642	3.84688591271224	3.75831169366259	3.90110220752203	3.71140090602051	0.199637847447348	0.709838336784279	0.924148005169415
Merged-chr12-99965172-4	chr12	99964672	99965672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164427, intron 1 of 2)	intron (NM_001164427, intron 1 of 2)	673.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.04986911439393	7.4126026552886	7.06125237722508	7.07786897701376	7.26544862385128	7.17020593423262	-0.0247189114282262	0.922661425793052	0.982621045978137
Merged-chr7-25682639-2	chr7	25682139	25683139	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	intron (NM_172148, intron 1 of 2)	1481.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	4.74764328593799	4.42387744200456	4.69244218322192	4.84886786976876	4.80417054783969	5.01129171487443	0.597904722806314	0.144946066563348	0.507831616184637
Merged-chr1-36070090-3	chr1	36069555	36070555	+	683.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	1655.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.59779033941008	6.79065627465944	6.72053191562569	6.86684936450331	6.94564455415913	6.63102145269637	0.19597802257008	0.453162950898504	0.809675535403562
Merged-chr11-94602743-1	chr11	94602243	94603243	+	684.0	f1_c57bl6.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-957.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	5.16819391807478	5.08396211688444	4.73983159106962	4.73318250233577	4.91363812338012	5.16860727766109	-0.166549744437685	0.681498823378306	0.914693263933768
Merged-chr19-9122626-4	chr19	9122131	9123131	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025610, intron 2 of 6)	RLTR49|LTR|ERVK	12935.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	3.80933319713278	3.89391584300937	3.98586375650568	3.64580427990034	3.60938004420318	4.0079393910828	-0.446645409015132	0.409702272769573	0.783037110673669
Merged-chr1-156568314-1	chr1	156567814	156568814	+	738.0	f1_balb.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	9527.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.59244692624873	3.84572141891393	3.83382078424485	4.28430545845546	3.94565919169122	3.7984909883043	0.826743369619579	0.128315231393941	0.479145348536969
Merged-chr19-56732162-3	chr19	56731664	56732664	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9792.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.54663821759861	4.02691965247928	4.22358902923458	4.32322051062855	4.70811545906889	4.38572589434621	0.520608753099608	0.288994794894812	0.686479171361087
Merged-chr2-35327077-4	chr2	35326570	35327570	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9939.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	6.82484716862273	7.02928395157392	6.79216578324767	6.73421868089405	6.933576720978	6.63965120856706	-0.165541181451103	0.526939070952335	0.849710825989052
Merged-chr4-49518636-3	chr4	49518150	49519150	+	832.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178603, intron 1 of 1)	MTD|LTR|ERVL-MaLR	2433.0	NM_178603	28028.0	Mm.30052	NM_178603	ENSMUSG00000044018	Mrpl50	AA408971|AI317351|D4Wsu125e	mitochondrial ribosomal protein L50	protein-coding	3.35789477841318	3.3708697968422	3.80809337915615	3.90700290961997	3.53260224636924	3.87701372075439	0.886229198968984	0.14089178200082	0.501507730105887
Merged-chr7-14533664-3	chr7	14533171	14534171	+	926.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28500.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	4.82493717905602	5.06336399603303	4.99404428635127	4.7943385670902	4.68373282885494	4.63991607105584	-0.575311189978735	0.144488872567948	0.507214386763159
Merged-chr2-103484322-1	chr2	103483822	103484822	+	567.0	f1_c57bl6.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	831.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	5.78578391012268	5.88244484660687	6.18307013215356	6.11139119737232	6.04278173177618	6.07678096913556	0.220109960454208	0.466379611051571	0.817564460379622
Merged-chr5-143056719-4	chr5	143056211	143057211	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56309.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.3668800934065	6.40223058704914	6.51064326920833	6.34694624552002	6.42979267913753	6.56953038434008	0.0386436528112741	0.885516291402885	0.973632007873161
Merged-chr11-117196897-3	chr11	117196377	117197377	+	876.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2784.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.10952155749346	5.77485846068055	5.67356159407846	6.22659292600644	6.04711014878196	6.10974409297612	0.436074274086991	0.163834936764912	0.537798828885102
Merged-chr9-64018982-7	chr9	64018445	64019445	+	886.078247	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	3114.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.56768741148053	4.70275696625982	4.95357069207804	5.10131511450065	4.83850525690027	4.75952010615947	0.383417100603308	0.350092629571947	0.738177163457543
Merged-chr2-121450248-4	chr2	121449780	121450780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025371)	TTS (NM_001025371)	1082.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	7.31732851098649	7.20874316037486	7.37526318831013	7.58931724955926	7.68379386578542	7.77063760062135	0.560758610171177	0.0131260867917361	0.12154411637734
Merged-chr6-127108910-2	chr6	127108410	127109410	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	642.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	4.80806751279865	4.83756229925983	4.60261773964108	4.36331210916646	4.25161389153698	4.05191921753611	-1.31985367982144	0.00358580476269803	0.0480385835927511
Merged-chr13-43556792-2	chr13	43556292	43557292	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 1 of 8)	ID_B1|SINE|B4	3399.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	3.91070057471082	3.46642526476277	4.0050366316964	3.69814013532624	3.67875528896769	3.62916887648892	-0.458117794912488	0.426462276593733	0.793831751209399
Merged-chr7-16399218-4	chr7	16398747	16399747	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1949.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	7.86633782167603	8.02121302664831	8.02655517197961	8.0026938644879	8.2595562979684	7.82408184350343	0.109621923600135	0.63851714254054	0.897576536084903
Merged-chr2-79228786-3	chr2	79228286	79229286	+	669.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26640.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.75399935844391	5.47066465927387	5.73401804837191	5.82101012649007	5.87528021914672	5.98675315231121	0.429889621308418	0.171795725475473	0.550137728038914
Merged-chr16-64876989-4	chr16	64876530	64877530	+	778.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	25029.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	2.85175966912616	2.81311378570659	2.90133462431658	3.20555993197957	3.06247183996985	3.03535346421224	1.21615891533993	0.0759597525876873	0.362702805768179
Merged-chr15-85337408-2	chr15	85336908	85337908	+	572.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 1 of 11)	intron (NM_016843, intron 1 of 11)	1027.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	4.37855688611019	4.23415133381469	4.34113242265977	4.40759791834371	4.20245898875302	4.07804233931797	-0.208279388532813	0.654080048550433	0.903659366725628
Merged-chr17-87405378-2	chr17	87404878	87405878	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22363.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	5.39728707749384	5.53404306455919	5.59462224692951	5.06729821931473	5.27740546307857	4.91595589382112	-0.790354825516488	0.0298790138746457	0.208414199554156
Merged-chr18-39544383-3	chr18	39543881	39544881	+	643.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57136.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.38025949349739	2.96654109092356	3.0606554732586	2.87473165832775	2.85392813788505	3.01336171627836	-1.11118018197521	0.115816764412775	0.454334134800726
Merged-chr18-60737597-2	chr18	60737097	60738097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-4456.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.04663477212261	4.27753880858988	4.83106590068827	3.96186127121233	3.90398305694463	4.48013881681969	-0.757689022025027	0.172315153369458	0.550858378107229
Merged-chr12-91661740-2	chr12	91661240	91662240	+	976.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	RMER4B|LTR|ERVK	-71253.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	2.99370925158706	2.68682357282176	2.9432728855108	3.04130739533856	2.93113359782752	3.13245564138751	0.72769439427429	0.305708986944232	0.701877197330602
Merged-chr5-149272674-4	chr5	149272173	149273173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	7669.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.93650265627073	5.39408985216112	5.49928454637235	5.0726103781229	5.34379884098758	5.61311179318521	0.123259103409774	0.755316730535389	0.939269406300643
Merged-chr3-60506882-2	chr3	60506364	60507364	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	5685.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.31599689178841	4.63165566113856	4.57654158759908	4.38242237737267	4.90729428470514	4.60235837162553	0.348864436320694	0.44319182476467	0.803667902083831
Merged-chr14-25861980-4	chr14	25861483	25862483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	19828.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	6.70222022240142	6.80647722597919	6.30533062502909	6.15330439648994	5.77880530704126	5.73617016128388	-1.2064757226587	0.000139145971091388	0.00373924899251632
Merged-chr11-77985202-2	chr11	77984702	77985702	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 2 of 14)	intron (NM_174852, intron 2 of 14)	2386.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	4.83341490486397	5.02979198548284	5.69771372486148	5.19150615924697	5.2428153580429	5.34463415334887	0.0585335972019798	0.889540945205765	0.974240173857916
Merged-chr15-88128622-3	chr15	88128141	88129141	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186233.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	6.85810817279949	7.05564122056345	6.56221278323498	4.23159106311887	4.05937624068488	4.73124213129807	-5.99421092257059	9.76527538762425e-27	2.13828693277221e-23
Merged-chr11-97884192-4	chr11	97883673	97884673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081435)	promoter-TSS (NM_001081435)	-19.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	5.95774424795238	6.02118988041333	6.37279268751784	6.37794223731429	6.5641111207897	6.35785103812652	0.540642116707854	0.0654897920010492	0.333778917850258
Merged-chr5-134231647-4	chr5	134231124	134232124	+	966.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	6.9774435164079	7.29413888964605	7.19694166471545	7.02551180442572	7.2483087448913	7.09387712659693	-0.0488161839606299	0.845284736147351	0.963765935544047
Merged-chr5-64160291-4	chr5	64159843	64160843	+	923.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310611)	promoter-TSS (NM_001310611)	83.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.73277332700682	3.35716121371896	3.39688859018824	3.66650599882618	3.23783521084824	3.29009937704696	-0.355297507146598	0.578690700140957	0.872437129840066
Merged-chr4-55814985-4	chr4	55814476	55815476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-282501.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.16652152250751	3.81709130127988	3.74525812265081	3.85739895158986	3.88995038159802	3.97168581989821	-0.0784945708635995	0.88219505478928	0.973046913650849
Merged-chr4-141995301-2	chr4	141994801	141995801	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12309.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	4.2517421508696	4.49201735846105	4.35996646718623	4.08060540956048	4.28432695616126	4.34029930893126	-0.359713927758032	0.43562960036215	0.799220968093966
Merged-chr3-127789505-1	chr3	127789005	127790005	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	-367.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	7.7049639404084	7.59819611594608	7.50062965914659	7.54675121900813	7.63140976647495	7.69923577868664	0.0254800471787134	0.909187592838131	0.979384717565381
Merged-chr17-57290977-4	chr17	57290475	57291475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11875.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.4649797004583	7.37517807942239	7.22573986301004	7.13346714680155	7.35004876421354	6.77517852399918	-0.359521814942499	0.181970355495612	0.564609853313466
Merged-chr13-21179556-2	chr13	21179056	21180056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009054)	promoter-TSS (NM_009054)	-375.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.75653310090663	5.67940550060618	5.93125012556732	5.86233315206754	5.7265691453907	6.03535314006063	0.154222577384321	0.62256581461102	0.891197759894683
Merged-chr3-96171075-3	chr3	96170612	96171612	+	834.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181409, exon 17 of 17)	exon (NM_181409, exon 17 of 17)	-1394.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	5.69809864905188	5.89860287413468	6.17693254818684	5.50573218572471	5.91391233841075	5.79837299245158	-0.311238562819741	0.356499128815755	0.743317701418332
Merged-chr11-115209385-4	chr11	115208880	115209880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	21893.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	4.44822142184019	4.00695082256751	4.37424902410526	4.58593170001997	4.19456165320143	4.71681302392974	0.565704377648895	0.250398964962233	0.647759896675811
Merged-chr5-143729548-1	chr5	143729048	143730048	+	543.0	f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	2732.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	3.37860096355005	2.99381322023814	3.21343133619546	2.96553947275483	3.01967198028666	3.28475377583474	-0.486600708438955	0.474808987894049	0.821677681142383
Merged-chr7-116490723-4	chr7	116490233	116491233	+	751.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-13636.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.35815886005739	3.07739029147955	3.43053644199084	3.06923881672785	3.07219855204683	3.28745786586023	-0.634927578647915	0.332096335255527	0.72335990848255
Merged-chr9-110678200-4	chr9	110677713	110678713	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	RLTR28|LTR|ERVL	21710.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.69078376266164	4.85294319923164	4.81701065304845	4.9728615709629	4.97204105490138	5.0608682481489	0.468271556525601	0.218905907753844	0.613128894826908
Merged-chr8-57488617-4	chr8	57488107	57489107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	644.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	7.26927331701528	7.32497236589169	6.88394784102447	6.90965368767172	7.00071469311481	6.78715003925553	-0.418365169593588	0.111220633208877	0.445472081717353
Merged-chr3-90265709-4	chr3	90265226	90266226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	491.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	8.96891713772122	8.96035321626831	8.46546209557985	8.7655027837156	8.88198696512773	8.54866594128813	-0.112354371691825	0.641775999929549	0.899171520014446
Merged-chr10-99133482-4	chr10	99133021	99134021	+	868.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	25386.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.61652415725919	4.74583226130658	4.30549441931359	4.39837256583689	4.45477222408069	4.42125602272969	-0.383788974134395	0.387419946367061	0.767643922877325
Merged-chr9-103229339-4	chr9	103228800	103229800	+	900.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	986.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	6.18928107598871	6.34673326380257	5.88390517061421	5.73543739778718	5.46361526253209	5.65275422650178	-0.97265405737812	0.00247605560176433	0.0364586152029033
Merged-chr7-80775450-4	chr7	80774988	80775988	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B3|SINE|B2	27843.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.77730765688878	9.12085451772971	8.33219602567119	8.78892513565467	9.2311306767788	8.32851367299265	0.07368057267053	0.813662323217563	0.955940138311315
Merged-chr14-75845849-4	chr14	75845320	75846320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	564.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	8.69058738130853	8.63753545582953	8.42770248444195	8.44778250466393	8.25593953618185	8.21884413462277	-0.391252029674831	0.0682685969195305	0.341765400583571
Merged-chr12-40656092-4	chr12	40655578	40656578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210025.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.18530400441673	6.17128857273476	6.46121674713778	6.68894184728591	6.74493580960332	6.40998122696935	0.587778152320211	0.036897653892585	0.236713954132168
Merged-chr1-118525482-2	chr1	118524982	118525982	+	597.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359345, intron 23 of 38)	intron (NM_001359345, intron 23 of 38)	-66217.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	3.34306447352404	3.33424734463254	3.28796170802717	3.23126473045389	3.34668971708471	3.30224060996512	-0.109832457720716	0.856165323963641	0.966380145257578
Merged-chr7-80860911-4	chr7	80860421	80861421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	6.1743543711903	6.2598179129733	6.09729981332148	6.37644924474646	6.39657521196284	6.1582490106178	0.23142004505703	0.410246598921774	0.783146714762847
Merged-chr14-77825297-4	chr14	77824804	77825804	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025384)	TTS (NM_025384)	-26336.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.12574743691362	3.43205280026378	2.99365984067637	3.12514113290293	3.09152537092316	3.24891684981207	-0.213372242271137	0.751520117360969	0.937886504040509
Merged-chr11-75591678-2	chr11	75591178	75592178	+	914.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	3599.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	4.12955129206959	4.31600300347035	4.49672974685415	4.39126216092568	4.20985147465827	4.74724600086382	0.364927709134601	0.446374821430888	0.805857152128907
Merged-chr12-85344425-3	chr12	85343917	85344917	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5055.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	6.99008603470664	6.83795911476979	7.22977686111812	7.30364516621093	7.67746054426761	7.35460864613328	0.659166677677033	0.0117187074047062	0.112363471506199
Merged-chr2-121442018-2	chr2	121441507	121442507	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145973, intron 2 of 10)	intron (NM_145973, intron 2 of 10)	594.0	NM_145973	269344.0	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	1.87476736208709	1.94621632140693	2.07425130426895	1.80993672863893	1.75130379735352	1.81312325735916	-1.59608009726924	0.118383759131551	1
Merged-chr2-173784563-4	chr2	173784067	173785067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019806)	TTS (NM_019806)	46996.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	6.21346633373846	6.49836345611318	6.59475645547214	6.15667125941002	6.06448382424082	5.99558595385329	-0.605867312192004	0.0375350975668169	0.239474037596971
Merged-chr6-125083190-3	chr6	125082685	125083685	+	720.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163269)	TTS (NM_001163269)	11908.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	3.46522722337005	3.3513599207019	3.55195413955294	3.28459027861183	3.46034388698591	3.51726730006956	-0.117158766121512	0.843075596076429	0.963298890080283
Merged-chr12-73779412-4	chr12	73778897	73779897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121927.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	6.41917681733526	6.78164671456836	6.22217350823238	6.56766096028235	6.51780540969575	6.07496417542042	-0.146796205959782	0.644162197734026	0.900067122451665
Merged-chr11-70254174-4	chr11	70253707	70254707	+	949.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007440, intron 2 of 13)	intron (NM_007440, intron 2 of 13)	1163.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	3.26359128017531	2.89812487334573	3.11611390378087	3.10802047190853	3.10502727602449	3.06964461295285	-0.0294317091620901	0.965113647627062	0.99178188919888
Merged-chr2-155956456-4	chr2	155955986	155956986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001129999)	promoter-TSS (NM_001129999)	-72.0	NM_001129999	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	5.9588071647961	6.09847445479439	6.34324360164731	6.44482879629584	6.46659478856128	6.18253268603818	0.410007328004108	0.163120326653076	0.536763857542024
Merged-chr12-76369557-4	chr12	76369062	76370062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	-2.0	NM_028356	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	8.06939407596445	8.14386185160063	8.17174819839455	8.15767319068044	7.88629650194086	7.93577589181837	-0.182917086390004	0.399638660289779	0.775995820989774
Merged-chr4-89458081-4	chr4	89457595	89458595	+	976.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147063.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.02455348811454	4.38786525935946	4.4732968120905	4.17649030110866	4.38304422685015	4.28620175066774	-0.0427314654911443	0.928843562341898	0.983906798062857
Merged-chr11-85164578-2	chr11	85164078	85165078	+	812.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-6518.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	5.2375146755235	5.12845810175125	5.16379792170369	5.24548594473167	5.25291454282136	5.44310843688779	0.266827497760791	0.444836926214568	0.804512062173139
Merged-chr1-134494599-4	chr1	134494121	134495121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-39.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	7.96280420567649	8.31155706735309	7.98480638480912	7.89236789428428	8.29203119376514	7.86641721406279	-0.0854846028080324	0.733050325962374	0.931985446585439
Merged-chr11-100355483-4	chr11	100354951	100355951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359052, intron 1 of 12)	CpG	677.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	6.59289466124879	6.56042709408129	6.56098281862377	6.17480696514809	6.59005171210757	6.15178100518195	-0.379098133880711	0.192544521301872	0.579601410786647
Merged-chr14-87140628-1	chr14	87140128	87141128	+	723.0	f1_c57bl6.idr	intron (NM_019670, intron 1 of 27)	intron (NM_019670, intron 1 of 27)	596.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	4.51422922463529	4.0436589518162	3.84619140665257	4.16946032118334	4.06248172321184	4.12787935372592	-0.158195617024653	0.764473946362849	0.941979298344481
Merged-chr7-90131872-7	chr7	90131367	90132367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	1654.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	8.46746411407846	8.80792921941109	8.35798206726432	8.54461891691442	8.7820992657353	8.28116695948994	-0.00730096598932239	0.976653553487286	0.994723308989508
Merged-chr12-79613736-7	chr12	79613159	79614159	+	951.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311074.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.32687899454369	5.96179675099069	6.10737222829077	6.2876900401149	6.38911773810777	5.9306586643021	0.145931819950999	0.639301389216592	0.898021510164209
Merged-chr18-53148644-1	chr18	53148144	53149144	+	569.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-27648.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	2.38296572023945	2.27998629108675	2.41374438853152	2.65742445133054	2.53846241588629	2.61795878111773	1.56138530926258	0.0573765892646514	1
Merged-chr8-70695891-4	chr8	70695421	70696421	+	952.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	7.23508609547553	7.43189122543847	7.07429138414427	7.14950796068857	7.42303667692233	7.15813529272567	-0.00879401717179558	0.972310804875306	0.993868590220018
Merged-chr9-63793869-4	chr9	63793396	63794396	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35902.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	2.93784375702323	2.71827329291189	2.91071193814147	2.62951965365504	2.9275839023614	2.53487617060455	-0.731289554361795	0.369130087866722	0.753878426844475
Merged-chr3-53461171-2	chr3	53460671	53461671	+	696.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	B4|SINE|B4	2087.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	6.55934647201772	6.84752145767688	6.85090650076249	6.85169133885091	7.03071855743	7.04496632856437	0.34296270907557	0.185142011286769	0.569259347984238
Merged-chr7-127777061-4	chr7	127776551	127777551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-338.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	7.94002247648622	8.09207848371667	7.86621115693978	7.90297640878646	7.9046286810452	7.94608122515166	-0.080584522581487	0.70697772498984	0.923161381966479
Merged-chr17-26648603-2	chr17	26648103	26649103	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 9 of 9)	B1_Mus2|SINE|Alu	-27793.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	3.605835901028	3.58837680768182	4.03976518016129	3.48418385997556	3.18755439660111	3.69688740095473	-1.017052918932	0.105420001247338	0.433345887945289
Merged-chr15-73623242-2	chr15	73622742	73623742	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	1502.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.29963851554239	4.44270335812055	5.01435911129349	4.30796392482482	4.3656183494977	4.60349127896554	-0.456203036580627	0.346674683440358	0.734817218634266
Merged-chr4-43963950-2	chr4	43963450	43964450	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	6248.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	4.81352648827823	4.26154056636117	4.70805543874552	4.61777974010663	4.63471593304364	5.25853095084727	0.569935027439572	0.233858895707852	0.630121355137759
Merged-chr9-119324274-3	chr9	119323785	119324785	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1858.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	5.34041965734994	5.44068703528395	5.45576372455006	5.98068712705698	6.03771423100633	6.17646654113802	1.18595902217386	0.000135812561804827	0.00367024736689056
Merged-chr10-53877443-3	chr10	53876946	53877946	+	883.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126537.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	3.56309591010142	3.51983113593199	3.79432673428548	3.32479516454773	3.12429767592656	3.6718954547691	-0.896949194670041	0.15744668007686	0.52874937869134
Merged-chr5-143532236-3	chr5	143531749	143532749	+	908.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4218.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	3.62554899627236	3.48087417041937	3.71978798071407	3.47898663696261	3.35609601537335	3.88263889790989	-0.0915951072702836	0.878288827467486	0.971842464414451
Merged-chr9-110529190-4	chr9	110528679	110529679	+	981.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3418.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	5.16910719104115	5.15624422670351	5.31378329641957	5.50879264743037	5.81359061474834	5.81275329400933	0.983804341289603	0.00362495455846381	0.0484071928904922
Merged-chr1-191287185-2	chr1	191286685	191287685	+	854.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30933.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	3.28922028932799	2.99216740139961	3.17402769559375	3.06783965337966	3.10652854205844	2.94346239876069	-0.493415036624241	0.464833161316963	0.816595063921171
Merged-chr16-33584846-1	chr16	33584346	33585346	+	546.0	f1_balb.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	66251.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.90110793445019	3.90636007438509	3.60249657846577	3.90783589197439	3.7375493222105	3.67441708906598	-0.129630609678756	0.812340394090954	0.955553570095744
Merged-chr3-81051739-4	chr3	81051233	81052233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	15317.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	7.67962708517079	7.97216041364809	7.44075541321439	7.28801697275115	7.92337210371993	7.42131558416813	-0.199310670849164	0.491342877365434	0.830479151309655
Merged-chr3-16182070-2	chr3	16181570	16182570	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	4.89196526284493	4.91276780919594	5.12757782746448	4.63223250994188	4.622048160131	5.19047135076652	-0.325976161293902	0.441354197948397	0.802556876306087
Merged-chr11-53349937-2	chr11	53349437	53350437	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-830.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	6.19411790592625	6.34300771457231	5.97465493666328	5.96685914079726	6.15781619343758	5.80590203885915	-0.32661914564817	0.289759888662654	0.687433091433357
Merged-chr6-136465207-4	chr6	136464697	136465697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-49628.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	6.97340014459416	7.3481202610601	6.79395380178097	6.9576076147328	7.28065548851565	6.59401050990138	-0.12177598486909	0.694508150518859	0.919210273513843
Merged-chr2-131180161-4	chr2	131179658	131180658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007682)	promoter-TSS (NM_007682)	-91.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	5.65133893153445	5.76447142108893	6.10102434701344	5.56864691221591	5.68380152576965	5.73195301742332	-0.32596252207138	0.319357850540561	0.713391715959597
Merged-chr11-78263887-3	chr11	78263396	78264396	+	827.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 3 of 38)	intron (NM_001002004, intron 3 of 38)	2142.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	5.03492534192268	4.94491443873165	5.05117663854936	4.85353563649256	4.92338158148861	5.11510464912378	-0.102214927197889	0.785228078325576	0.947850129107983
Merged-chr8-34157029-2	chr8	34156529	34157529	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	2466.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	4.34132338469078	4.47299356641557	4.71229917606789	4.86401348308943	4.79066642871966	4.77797411586075	0.726703494783714	0.080836681907778	0.3762100021356
Merged-chr11-101646273-4	chr11	101645795	101646795	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18346.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	7.46191247618319	7.4724526398872	7.36545626277612	7.83862862246596	7.72563505582661	7.48749808205439	0.37943332343549	0.102804717616297	0.427516364806677
Merged-chr13-70650276-4	chr13	70649693	70650693	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-12559.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	3.86039280270098	3.99163477799131	3.79242615319818	3.46532089110714	3.37299092867723	3.65457400036131	-1.38347743360089	0.0144453706654106	0.129369325403884
Merged-chr7-138885770-3	chr7	138885266	138886266	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23740.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	2.3006415022491	2.38765968429423	2.44244532484022	2.41410616431671	2.02948035125459	2.18477992833564	-1.08314288336732	0.248266399612263	1
Merged-chr11-97050767-4	chr11	97050253	97051253	+	839.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081434)	promoter-TSS (NM_001081434)	-67.0	NM_001310509	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	5.25108446000118	4.89023840328391	5.07453755466755	4.92637737978909	4.91804424523934	5.10514780170793	-0.216841759840801	0.570204681956318	0.869072933274727
Merged-chr19-21286700-6	chr19	21286210	21287210	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	14432.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.51755902214279	3.20499514587491	3.20013404130899	3.28523258293926	3.08873711887821	3.33078607493751	-0.350278068888067	0.586369201119152	0.875513359293755
Merged-chr7-4071732-2	chr7	4071232	4072232	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8528.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	5.804886365509	5.99685903879392	5.81772496485059	5.76665433468287	6.23301162926083	6.0685225590621	0.284866275227362	0.36898628583195	0.753809303364759
Merged-chr9-53741210-4	chr9	53740700	53741700	+	891.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30335.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	3.42826113498999	3.23153151001759	3.34989771230057	3.24566130277476	3.48372419474531	3.58101171222908	0.396390415413237	0.516061998842346	0.844051513295388
Merged-chr12-79807882-4	chr12	79807394	79808394	+	901.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	116839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.84330104999325	4.93872033620103	4.80294316196652	5.20019282806305	5.2154256876384	5.02168113365892	0.615912200469636	0.0979885258074498	0.417332715124445
Merged-chr18-46312503-2	chr18	46311988	46312988	+	612.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	-560.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	3.63228918863842	3.73824272883513	3.54332448059516	3.54157881943092	3.26468872032569	3.66717177244467	-0.541560329182589	0.360244183059057	0.746468721585269
Merged-chr8-124232041-6	chr8	124231479	124232479	+	748.561096	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	CpG	585.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.6597803799563	5.69222925409851	6.05991575818024	6.00360573522533	5.71717743650065	6.38306389866611	0.429305415423357	0.218930140703732	0.613128894826908
Merged-chr8-18699459-8	chr8	18698965	18699965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007426, intron 5 of 8)	L3|LINE|CR1	42097.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	5.38311797565494	5.78333594035407	5.55787037727866	4.94657758734335	5.05608111602745	5.20125971793905	-1.0395392452751	0.00399225438026828	0.0518384551100578
Merged-chr15-68257126-2	chr15	68256626	68257626	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	1730.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.68802668171368	5.93434831158676	6.15009974064285	6.16316743409071	6.17804233202024	5.79075986821118	0.23813218980541	0.461321052842455	0.814992635038861
Merged-chr15-99396007-6	chr15	99395421	99396421	+	876.1083369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	2702.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	7.15499441722013	7.00008257003134	6.8704911954328	6.52118340161541	6.55773154472705	6.71634326592187	-0.660171264819649	0.0101360552703146	0.10136849134355
Merged-chr3-27258635-4	chr3	27258145	27259145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-58432.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	7.66953006272674	8.3217875775978	7.41766072881173	7.79515612710949	7.97319533440495	7.49691729012608	-0.1388996946435	0.655032328177336	0.904074343771954
Merged-chr14-60830279-4	chr14	60829771	60830771	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027436, intron 12 of 18)	MTD|LTR|ERVL-MaLR	45705.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	5.14132793225146	4.90725773299149	4.8923913113616	5.35867749121924	5.80676375861325	5.28672962867182	1.06018709086405	0.00566372960635743	0.0668749273571433
Merged-chr9-61057850-2	chr9	61057350	61058350	+	684.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40781.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	2.84830393479446	2.97266470803893	2.84427662564649	3.28248605237363	3.31141671216203	3.17048161504108	1.68172593149548	0.0148289666061068	0.131558657997754
Merged-chr19-40700130-2	chr19	40699628	40700628	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	40358.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.63657136691355	3.30116776856736	3.81648870142032	3.43793980865694	3.41580805780998	3.59113644405953	-0.414129987187997	0.493514558308446	0.831363310680026
Merged-chr7-5060356-4	chr7	5059873	5060873	+	943.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290432, exon 6 of 6)	exon (NM_001290432, exon 6 of 6)	-1770.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	6.0003452059863	6.32766084126333	6.79053755931391	6.36322511179858	6.49184491166057	6.3466460351087	0.00237591634782888	0.994156059000213	0.998918571480046
Merged-chr2-160083815-4	chr2	160083290	160084290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67137.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.07251816689826	6.21361690205495	5.63387051734767	5.43912137844302	5.43686498998656	5.61123709831966	-0.939096076635967	0.0053457391242461	0.0640934093732377
Merged-chr11-3291760-2	chr11	3291260	3292260	+	784.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	1303.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	3.47978889618842	3.24375602233994	3.12324848693849	3.38419976500035	3.02139099038747	3.2576273509331	-0.276859887909959	0.676449078039907	0.912525597578286
Merged-chr7-35169542-4	chr7	35169036	35170036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16849.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	2.99708962586947	2.981633324106	2.98651952615683	3.28945661622438	3.11911907870598	3.12094302300082	0.852545460718773	0.194160395151127	0.581328465709111
Merged-chr6-122872375-2	chr6	122871875	122872875	+	653.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2182.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	7.43075913248862	7.52825610009857	7.18850088658858	7.16947753652346	7.44132556080233	7.35160475384508	-0.102760313233582	0.676064438793752	0.912421384593547
Merged-chr13-52645808-2	chr13	52645308	52646308	+	613.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	48926.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.33232513893124	2.22477459354499	2.60285849002842	2.52332741433731	2.42507758776418	2.73597130063992	1.05144617600268	0.218494128285991	1
Merged-chr7-114117100-4	chr7	114116599	114117599	+	921.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	CpG	682.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.9049147491833	4.34619930094115	4.44784572291008	4.48063183924164	4.04079856662999	4.38324740133621	-0.722078537913153	0.14151292265593	0.502183459290427
Merged-chr15-27624844-2	chr15	27624344	27625344	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5849.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	6.79456132892598	6.67891660748435	5.98376638251426	6.16018765861282	6.4425906889255	6.14360552188151	-0.458544118510306	0.173466562811237	0.552321040768278
Merged-chr1-86502336-2	chr1	86501836	86502836	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24221.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	2.13771633193245	1.95152821878571	2.22508502315283	2.28235376179325	2.10364899381608	2.42841960497847	1.20113613414483	0.199110080360012	1
Merged-chr11-74572902-4	chr11	74572401	74573401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	17257.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	2.6547319472777	3.08492677310896	2.81267433894116	2.80141957495247	2.76597296065689	3.12061695844376	0.167728982580857	0.825415174552178	0.958821343666982
Merged-chr11-98952871-4	chr11	98952367	98953367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-7604.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.46955964864935	5.21772183629368	5.67249894860035	5.8310717589499	5.73289765749445	5.65529879984096	0.542192691586095	0.106910033730522	0.436454439973323
Merged-chr6-38432697-4	chr6	38432281	38433281	+	838.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1144.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	5.04144559220746	5.23616031496512	5.39852381144875	5.10268620949921	5.16829074650274	5.40399952838837	-0.00365608782985058	0.992028161056691	0.998363319124397
Merged-chr13-103768154-4	chr13	103767645	103768645	+	857.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361085, intron 2 of 11)	intron (NM_001361085, intron 2 of 11)	-3563.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	3.6697110739515	4.12671065809054	4.14430143699865	3.67139556429643	3.63238223349542	3.94130249239243	-0.776911041168944	0.163812934475821	0.537798828885102
Merged-chr7-141454307-2	chr7	141453807	141454807	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	-881.0	NM_025802	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	5.18165695601467	4.89616650844245	5.31611064737537	4.69917505187303	5.02637162452952	5.32101247163675	-0.216543691051559	0.598593775245736	0.880808927175713
Merged-chr10-96173117-4	chr10	96172603	96173603	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53104.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.50027504010017	5.3084361447821	5.60776712002792	5.33869522389696	5.52330753516611	5.84057763521774	0.197121211910127	0.574853002084596	0.870930401803592
Merged-chr18-58563765-4	chr18	58563270	58564270	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	7530.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.31676391587162	5.59366358777703	5.19444261058752	4.62307635202977	4.86597861840923	5.49386700403616	-0.701364278913766	0.108893786208152	0.440895049525956
Merged-chr16-94370310-3	chr16	94369826	94370826	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	4.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	7.36480731215578	7.4755452764216	7.4773927892269	7.5078357933053	7.35785381030514	7.19938172446203	-0.108019129338853	0.645312949207979	0.900494476554743
Merged-chr8-126660090-1	chr8	126659590	126660590	+	762.0	f1_c57bl6.idr	Intergenic	Intergenic	-66654.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.09731414314494	2.85154279791689	2.96444764014144	2.72363204327844	2.52590717081955	2.85750573189725	-1.44877358666652	0.0602654943612423	0.317793643593879
Merged-chr12-3345254-3	chr12	3344774	3345774	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-19858.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.86150007812841	6.78681794546641	7.0585061111587	7.14974681618343	7.18146058336441	7.10364655037488	0.378026510954146	0.121081591809822	0.465369063454335
Merged-chr10-127664324-2	chr10	127663824	127664824	+	875.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122895, exon 2 of 6)	exon (NM_001122895, exon 2 of 6)	2379.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	3.02464625319529	2.94683736159277	3.26110025281785	3.32929174720799	3.34780048093008	3.73787053303094	1.66622078313392	0.0126271475651723	0.118379489319461
Merged-chr7-19461761-4	chr7	19461248	19462248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-3254.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.71147405410677	5.85935497176464	6.0004050012428	6.00076553815309	6.26808283449371	6.03875821164654	0.454092025396396	0.135088952864887	0.491223853222672
Merged-chr5-65955379-2	chr5	65954879	65955879	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11745.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	5.10414545054579	5.30612478913735	4.82785612898562	4.64981672984303	5.04824585305203	4.93308469325265	-0.452949324905147	0.268219522958804	0.665319558653313
Merged-chr4-132515657-4	chr4	132515156	132516156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5200.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	6.41526531726699	6.35043503987667	6.41260596531014	6.68111007293684	6.95639019966805	6.47251255310567	0.543249229846024	0.0519557124765515	0.291061127297441
Merged-chr1-97662491-4	chr1	97661979	97662979	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-461.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.86745510683594	7.28531150400168	7.34781466792707	6.9372746367869	7.20356910149211	7.16912196808479	-0.106214862311128	0.692504097730919	0.91870248759071
Merged-chr5-36831282-2	chr5	36830782	36831782	+	976.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	-633.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	3.25499096792926	3.49029746530395	3.75885746388821	3.67315053983306	3.90481673588976	3.77873534612083	0.972465354636953	0.100555352525486	0.423011264207986
Merged-chr5-139377202-2	chr5	139376702	139377702	+	618.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-495.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	5.68670455607141	5.25275271750017	5.5924654739498	5.27240053602195	5.17620948509953	5.0637590859565	-0.67788877282463	0.061880104908852	0.322948691592307
Merged-chr8-47948449-4	chr8	47947900	47948900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42151.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.50409743556156	4.57828700003951	5.12306099799019	4.74173681153306	4.99490701608405	4.77901224515873	0.220414909353987	0.616622446592933	0.888421011873208
Merged-chr1-128593235-3	chr1	128592718	128593718	+	917.3428960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-919.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.3420143254494	3.30262341448898	3.71730601462656	2.91948431675859	2.96145707500722	3.11012127806735	-2.0466023047727	0.00335469471134034	0.0457152698233224
Merged-chr18-70530305-4	chr18	70529801	70530801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	20.0	NM_001136090	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	7.21368743893636	7.67995838969689	6.94111789818071	7.73700056633318	8.12179827686786	7.14552573367462	0.602690613635601	0.0757834702801168	0.362505949702096
Merged-chr7-140944505-2	chr7	140944005	140945005	+	632.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 3 of 11)	intron (NR_153832, intron 3 of 11)	3114.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	2.72162806723548	2.88775192577534	2.94372793640218	2.60469181927833	2.82374169057958	2.89916116613422	-0.361307986185787	0.625249101136243	0.89246806537449
Merged-chr14-47533834-4	chr14	47533352	47534352	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34582.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	4.2307078492134	4.2750666811153	4.38434693770638	5.753740975602	5.95115478336578	5.90263728816324	3.51961866519125	1.78839592867644e-17	7.91536427836751e-15
Merged-chr7-19270825-4	chr7	19270343	19271343	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1011.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	6.37187439251551	6.6278258193977	6.89872891925152	6.78510153947074	7.14122195522949	7.67046957721082	0.920471192199491	0.00500949524403997	0.0612985412155997
Merged-chr1-183273278-4	chr1	183272698	183273698	+	829.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-23862.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	4.15204499124653	4.13680273932076	4.38256198126765	4.09344599611909	4.18223278201213	4.32371509423207	-0.0601175165233632	0.898199187800295	0.976261391798139
Merged-chr19-45005659-4	chr19	45005160	45006160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	-3.0	NM_001348254	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	6.63020723798689	6.98694831036524	6.90713227847677	6.58588208577708	6.84833315965992	6.79199580786178	-0.156616486490874	0.560248789284208	0.865206445804495
Merged-chr8-109737187-1	chr8	109736687	109737687	+	630.5	f0_balb.idr	intron (NM_001080930, intron 1 of 3)	intron (NM_001080930, intron 1 of 3)	552.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	6.96821315994076	7.13386124595673	7.1977789885253	7.29191356638579	7.01619293415857	6.85402568868495	-0.0430500392181638	0.868327617711758	0.969642939011354
Merged-chr13-101844611-3	chr13	101844105	101845105	+	620.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76388.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.40411757994151	5.63456320254207	5.59135902708098	5.63279188177269	5.55921097596802	5.42056445233299	-0.000480968815945719	0.998834856022277	0.999796106004013
Merged-chr14-8162003-3	chr14	8161486	8162486	+	717.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360315, intron 18 of 18)	intron (NM_001360315, intron 18 of 18)	11006.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	2.39498434269596	2.25725335518732	2.43541277624271	2.04766285671341	2.18525858573502	2.3841010422403	-1.05952159599567	0.247370486778766	1
Merged-chr8-116636156-4	chr8	116635639	116636639	+	825.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	L1MC3|LINE|L1	96852.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	3.3639188970802	3.12394470587743	3.46058720935127	3.73797510371843	3.69460783381776	3.35944739093673	1.10291881275383	0.0766793975597306	0.36479927456547
Merged-chr10-58523065-4	chr10	58522549	58523549	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 6 of 15)	L1Md_F2|LINE|L1	25112.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	4.00889890848806	4.07736358313887	3.77121696180959	4.15768242624958	4.25916154567927	3.84414304501891	0.411635301241837	0.432253061687706	0.797270167804312
Merged-chr10-94518358-3	chr10	94517851	94518851	+	904.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	RLTR11A2|LTR|ERVK	3494.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.33167548562893	4.20692276416674	3.75430846652057	3.88221944802403	3.98261452451587	3.82747769687063	-0.667256970075872	0.215630120873214	0.609048894570221
Merged-chr2-167656839-4	chr2	167656400	167657400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	4644.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	8.92659524000558	8.7001061746081	8.3827907354241	8.47214880866462	8.72045278747245	8.42026397330159	-0.202049392154011	0.402075576849474	0.77787096574423
Merged-chr5-124475434-4	chr5	124474933	124475933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	2802.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	7.48151998801183	7.068830485518	7.13643137552513	7.39452995983546	7.49133005694787	7.29152360152542	0.226427686634325	0.371399389436926	0.755584361766938
Merged-chr11-109472329-4	chr11	109471877	109472877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	852.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	8.1540862351524	8.48688984265403	7.89038881943773	8.32013725787529	8.53450254619544	7.96284548762802	0.130585431921005	0.630160852050607	0.894623438715505
Merged-chr6-97479442-4	chr6	97478925	97479925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	LTR16A|LTR|ERVL	8395.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.52055857445069	8.36384377489497	8.10019095219715	8.25546607448727	8.4379892184433	7.76335148693838	-0.212630736513139	0.426626064748616	0.793840707522572
Merged-chr10-99931506-2	chr10	99931006	99932006	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84315.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	2.98721587128547	3.13361454893491	3.09043992925536	3.20020889789138	3.32208794730393	3.54552903732744	1.202810386564	0.0644047998512661	0.330842979752078
Merged-chr1-43933897-4	chr1	43933406	43934406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310540)	promoter-TSS (NM_001310540)	-88.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	8.93043189861437	9.45309683598762	8.85494455709732	8.80479198390103	9.13581943176509	8.86175516685597	-0.229617980621289	0.363927533486763	0.749357676652347
Merged-chr7-80439956-3	chr7	80439454	80440454	+	963.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1b|LINE|L1	-34518.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	5.29928990736981	5.22687133077632	5.20428686717186	5.09651407424677	5.32903494457426	5.39223179533924	0.0616232127714962	0.860987310055398	0.967735933030551
Merged-chr17-57247843-4	chr17	57247359	57248359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308074)	promoter-TSS (NM_001308074)	-170.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	6.05785794561109	6.10335998099652	6.19161809535587	6.38370325758835	6.48117109247611	6.35183768640494	0.494662949090227	0.0710024316577021	0.349542677397591
Merged-chr1-21830117-3	chr1	21829642	21830642	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	131800.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	2.92939935359941	3.10087152087227	2.99176208142561	2.70748602454306	2.82081581136841	2.68920682644932	-1.346019135926	0.0691305202480055	0.343993860226086
Merged-chr7-127345889-8	chr7	127345363	127346363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146202)	promoter-TSS (NM_146202)	-549.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	7.00544287046721	6.91607543400133	7.14883458371841	7.07935278232968	7.0074940765515	7.0700171413287	0.0458462440717948	0.849428397571328	0.964672542888897
Merged-chr11-118229807-2	chr11	118229307	118230307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17065.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.77186909859467	6.39174747015569	6.48962324966224	6.46009337524034	6.17177443580603	6.2817728689662	-0.417967038829498	0.147530465058368	0.512448964165171
Merged-chr19-41383986-4	chr19	41383466	41384466	+	878.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	1104.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.4171840242177	8.66118407386286	8.04911854088837	8.82973074809688	9.05380166657781	8.44142673438491	0.54976831097164	0.0424247611635441	0.258178858106939
Merged-chr16-43380105-4	chr16	43379599	43380599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	40097.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	5.51734852038109	5.7422876126582	5.75600355636985	5.78594310144812	5.8792178136375	5.91477406067889	0.338597416454565	0.27612813120529	0.673426495461133
Merged-chr11-101417393-4	chr11	101416897	101417897	+	961.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144829)	promoter-TSS (NM_144829)	36.0	NM_144829	69684.0	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	4.77953501961334	4.95587663104545	5.00182129151826	4.87641498307718	4.86447277719295	4.60335472368298	-0.258148676942298	0.516738622985037	0.844297183847098
Merged-chr2-128745976-4	chr2	128745453	128746453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47038.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.93338919790085	7.68655472492031	7.56799748637707	7.52440138926434	7.71288375897505	7.76179450946496	-0.107538207230889	0.650342405240969	0.902576889668442
Merged-chr6-8420818-1	chr6	8420318	8421318	+	544.0	f0_balb.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88343.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	3.73801936740237	3.98533264032309	3.88027501168429	3.46065928565414	3.4939152979585	3.53316144643771	-1.3101388031083	0.0194022925876215	0.158230516674586
Merged-chr8-88635616-1	chr8	88635116	88636116	+	952.3333130000001	f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	512.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	6.92871362346259	6.86230534960586	7.07598533413674	7.72385186324925	8.05903862155612	7.54398540515921	1.25341700727534	9.46457892087224e-07	5.1675110423093e-05
Merged-chr3-100994452-4	chr3	100993955	100994955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-24792.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	6.3113749264872	6.69576029757707	6.35035412878636	6.25980500351571	6.65744522722845	6.39088982232956	-0.0255310536225261	0.931852185769819	0.984954100169394
Merged-chr8-94191302-4	chr8	94190811	94191811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	12222.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	7.59215580320836	7.29014991540818	6.97743599890529	7.48985961660949	7.46407682285007	7.11969397025882	0.0800577980751162	0.773453090431562	0.944087264718999
Merged-chr11-80301752-4	chr11	80301405	80302405	+	828.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139228, intron 1 of 8)	intron (NM_139228, intron 1 of 8)	993.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	3.000217500591	2.89236922290427	2.95524541865309	3.26039771855565	3.0687298444611	3.09001744950711	0.877918196764788	0.189113016033297	0.574736690094545
Merged-chr5-93094098-4	chr5	93093567	93094567	+	968.744019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	CpG	651.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	4.63693120175508	4.3189382245193	4.57218568316663	4.38309806923615	3.90913489576554	4.10810425456335	-0.983498840701807	0.0445912581310625	0.266165667616173
Merged-chr15-101275277-2	chr15	101274777	101275777	+	946.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010444)	TTS (NM_010444)	8431.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	2.99058611203908	3.27871348831388	3.41716792878448	3.19699653079187	3.3778518595499	3.32581552358957	0.273203331608154	0.674414979007141	0.911852710156386
Merged-chr8-11336699-4	chr8	11336206	11337206	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-23880.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	3.93562317602254	3.87741840527908	3.69880602792596	3.68871728941944	3.55385760117439	3.87184824643192	-0.474139157421013	0.383928055897141	0.765097611608213
Merged-chr17-45734551-2	chr17	45734051	45735051	+	761.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	45.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.7555928561243	2.73135416624314	2.71946290576076	2.49694617848354	2.45712333103482	2.53953902833828	-1.43861431479176	0.0672623531775705	1
Merged-chr9-47617774-2	chr9	47617207	47618207	+	620.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	ID4|SINE|ID	87355.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.65705500350568	4.85865068123699	4.59145692102592	4.2123970177457	3.79888043360151	4.31676027737643	-1.57824599277388	0.00121976327872004	0.0210350389421217
Merged-chr7-125556384-1	chr7	125555884	125556884	+	649.0	f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	4102.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	4.91178288032113	4.79492855649722	4.84150700492336	5.3879336742062	5.45645753368537	5.47279108886263	1.21957409253197	0.000645997443227187	0.0128662966536239
Merged-chr8-70522219-4	chr8	70521730	70522730	+	847.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029366, intron 1 of 4)	B2_Mm2|SINE|B2	950.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	6.01713247202941	5.9164377365097	5.79355802629439	6.02083443744551	5.91095040800131	5.72112643991977	-0.0379327155243808	0.901417247596641	0.977240024208116
Merged-chr13-111655465-4	chr13	111654977	111655977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30701.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	4.73033132837558	4.74912505215466	4.56764590123249	4.80039895152854	5.00687263326782	4.6784490184213	0.355752080258648	0.382753191814382	0.764157347532576
Merged-chr16-91917261-2	chr16	91916761	91917761	+	835.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14369.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.86321001057464	5.36069961738182	5.78189145716045	5.70845985914299	5.80082675838548	5.48585465826267	-0.0055052664318097	0.987391742315017	0.997218304929226
Merged-chr19-4058035-2	chr19	4057535	4058535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144869, intron 5 of 6)	intron (NM_144869, intron 5 of 6)	1412.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	2.80280461639497	2.82812391604713	3.46536343895833	2.73673354574847	2.52776738513447	3.23986597230306	-0.854017027669227	0.318008412999155	0.711817713144205
Merged-chr3-130691954-2	chr3	130691454	130692454	+	940.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17490.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	3.51104175149947	3.32786372977999	3.25441843150217	3.24048097555457	3.11209478773062	3.14689812717079	-0.853236097824242	0.177661057749547	0.558706727133464
Merged-chr18-10617814-4	chr18	10617318	10618318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009226)	promoter-TSS (NM_009226)	22.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	7.34641161592162	7.80916825828352	7.23068458508902	7.62744734101879	7.34775264366197	7.26381169695815	-0.104030023754699	0.706219626936799	0.92293266402006
Merged-chr10-94463600-2	chr10	94463100	94464100	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	MER58B|DNA|hAT-Charlie	-51257.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.61939101218098	7.74027765230105	7.2291508573385	7.13857309421008	7.30826570986278	6.94833630260152	-0.601884056952559	0.0239713898405699	0.182039920220329
Merged-chr2-128699449-3	chr2	128698994	128699994	+	810.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	579.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.94627215212913	7.0235438538278	6.98894688683512	7.15266485726275	7.19075020404032	6.76369437608081	0.112776361719745	0.662007683365135	0.906529117856727
Merged-chr7-107609819-4	chr7	107609310	107610310	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	2966.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.38830612403243	3.03997670861657	2.84851963430321	3.31458918257592	3.13202116280768	3.24227548090289	0.472726087108878	0.51163994944978	0.841487525968875
Merged-chr4-124714753-4	chr4	124714261	124715261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029157)	promoter-TSS (NM_029157)	-100.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	5.89849165642119	6.16184529995903	6.29924482484759	6.15953971694686	5.97144858437265	5.91069975095431	-0.176767576707223	0.562998090610163	0.865755360453189
Merged-chr11-69325805-4	chr11	69325295	69326295	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-463.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	7.72798834279473	7.80536156908378	7.60171039616769	7.84514944410972	8.22027828880761	7.77818597693187	0.362451974443284	0.134950521219692	0.490990947514131
Merged-chr3-60438867-4	chr3	60438347	60439347	+	877.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33983.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.16868889814936	4.16944712201672	4.07139163073527	4.85458932165305	5.24400621607258	4.82737636890342	2.11379026181628	3.03720289771424e-06	0.000143265067297623
Merged-chr5-113813883-2	chr5	113813383	113814383	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13531.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	3.01882418237501	2.93762905668873	2.87607933144104	2.99520480314767	2.74016360084046	3.12691182756139	0.0479475469438184	0.94623741318407	0.98796006280508
Merged-chr9-90260917-2	chr9	90260417	90261417	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9852.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.87006395748496	4.97128004791237	5.38157968790854	5.5176872915602	5.44246636785112	5.60788160104162	0.886497529960144	0.016041537921743	0.13909798743147
Merged-chr2-124671192-2	chr2	124670692	124671692	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	17611.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.77746290243469	4.56162347272188	4.65009169724449	4.50607148939429	4.30686632339181	4.93132978247895	-0.173558607576803	0.701703747612854	0.921463870335944
Merged-chr16-56659028-4	chr16	56658521	56659521	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 16 of 27)	intron (NM_001014399, intron 16 of 27)	58429.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	2.64333896373563	2.50452278955796	2.68952403784923	2.50431188871517	2.19925738337989	2.51402340166922	-1.26376248759502	0.147171021588026	1
Merged-chr8-88279766-4	chr8	88279268	88280268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	-3224.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.56081936442515	3.33028138770107	3.4944301183227	3.6597446912674	3.53270035159991	3.86886402927283	0.788435428200876	0.17435513580528	0.553498231280217
Merged-chr11-50041252-2	chr11	50040752	50041752	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	15921.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	5.04497089371742	5.12816760100819	5.12707943534701	5.39544057401395	5.4090301310323	5.73205718018395	0.820618146795246	0.0202047923331639	0.162570163463293
Merged-chr11-74981606-4	chr11	74981036	74982036	+	899.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	55664.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.46430332555324	3.42026442908417	3.28057458276285	3.26554353523081	3.1853976209221	3.173701216893	-0.754685130828905	0.222932932284973	0.61780657375114
Merged-chr14-103375750-3	chr14	103375243	103376243	+	701.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-28943.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.39860234682594	3.53227996289272	3.69237018312473	3.71507967425997	3.22185924864015	3.76169369065822	0.143624657275425	0.817263891683158	0.956754861188725
Merged-chr11-120355767-3	chr11	120355255	120356255	+	768.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5779.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	4.21556739640493	4.25329766424098	4.5190109607705	4.30404506405305	3.95431556465949	4.20728750577046	-0.467877960566674	0.33198329396491	0.723284088925227
Merged-chr2-120098041-4	chr2	120097530	120098530	+	927.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	56545.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.05167005886768	5.80569708618328	5.48753603548939	6.43934932608287	6.74291613414797	5.91160940931752	1.02694914803781	0.00495372481159966	0.0608397836344774
Merged-chr11-98361443-4	chr11	98360941	98361941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3073.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	6.93304486548034	6.60331509037078	7.0891798229927	7.04099780746192	7.1304262228807	7.03244138344951	0.288332864925956	0.275687699144468	0.673223632987407
Merged-chr9-64829896-3	chr9	64829396	64830396	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	URR1B|DNA|hAT-Charlie	18885.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	6.87965589761188	6.91047878025414	6.18450434661506	6.77997679589554	7.03172760648919	6.50241567596905	0.134789093308527	0.681018940502834	0.914531874396563
Merged-chr1-131524014-4	chr1	131523506	131524506	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	3355.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.28312232699258	4.18026972670253	4.48759005634462	4.53304172443818	4.54915504396055	4.55398686805992	0.595685474899945	0.174150458601422	0.55334916165878
Merged-chr7-123366910-2	chr7	123366410	123367410	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3005.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	5.58728325829474	5.52543704161691	5.5416178169683	5.58602996496789	5.73497197972167	5.32646262915481	0.0423387635752822	0.899414956893354	0.97662115673637
Merged-chr1-75210815-4	chr1	75210307	75211307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	-22.0	NR_102731	20872.0	Mm.1155	NM_011494	ENSMUSG00000026201	Stk16	EDPK|Krct|MPSK|PKL12|TSF-1	serine/threonine kinase 16	protein-coding	6.9652280562317	7.2124095087136	6.8794294837783	7.00830579461849	7.12745296151552	6.90830019002035	-0.015515899091884	0.951469203796747	0.98882810535857
Merged-chr2-167334581-2	chr2	167334081	167335081	+	951.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	14597.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.41223030421357	6.32202153433347	6.27990409280984	6.52397826796961	6.56547108804084	6.12237458126004	0.14694886190115	0.610003831698493	0.885428451824695
Merged-chr7-16616346-2	chr7	16615846	16616846	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	intron (NR_136929, intron 1 of 2)	-1353.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	2.92521645205553	3.11062265556817	2.99500314629945	2.76709560627768	3.05792398241977	2.82010531331723	-0.557343994857403	0.44045231208037	0.8018105360896
Merged-chr17-85090221-3	chr17	85089725	85090725	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	42.0	NM_145984	213760.0	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	6.60481655182819	6.80295374986565	6.65867555578542	6.61170449868525	6.68550209340948	6.24567576578147	-0.241434251409482	0.38816384445352	0.768151407607909
Merged-chr1-172310954-2	chr1	172310458	172311458	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1409.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	6.72014742166162	6.72192910212287	6.57700330694078	6.80639353622483	7.04551732563118	7.01248554258541	0.436865102210174	0.0858230281108324	0.387980143596987
Merged-chr12-80320101-4	chr12	80319604	80320604	+	931.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59723.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	5.51001663448914	5.72819940997959	5.86230893376118	5.53998605230844	5.63143575117146	5.85322573472909	-0.0491804415023271	0.881137061853337	0.97262624933271
Merged-chr7-45017734-4	chr7	45017240	45018240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009101)	promoter-TSS (NM_009101)	-202.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	7.06361143610703	7.07245357298006	7.07262039721566	7.18645263941358	7.21950708600628	7.18048080607262	0.192042827497184	0.405958302372526	0.780439975167702
Merged-chr18-32240276-4	chr18	32239771	32240771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-60.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	6.72016482744013	7.18067025688147	7.17878128701328	6.93204543422473	7.08724933173866	6.85313967151	-0.113710612758648	0.676527845745778	0.912525597578286
Merged-chr18-67289130-4	chr18	67288641	67289641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053261)	promoter-TSS (NM_053261)	-82.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	4.42353627283836	3.93959278580698	4.01735945430756	4.26671095886184	4.10528550561874	4.08771271182699	0.0134731327341585	0.978776325262852	0.995160277495735
Merged-chr13-104139770-4	chr13	104139261	104140261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361054, exon 11 of 11)	exon (NM_001361054, exon 11 of 11)	30020.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	4.4644911505917	4.66940999617766	4.29894667929958	4.75558446173658	4.5493569093249	4.59309840332173	0.334466554094605	0.44381512848895	0.803884349333946
Merged-chr2-68982984-1	chr2	68982484	68983484	+	614.0	f0_balb.idr	intron (NM_001347161, intron 3 of 10)	Lx8|LINE|L1	121543.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.46704595791914	3.73519660780458	3.64552045581943	3.53872351890035	3.36541627306319	3.61142175211376	-0.425346188993416	0.461916893975739	0.815107818354545
Merged-chr2-38484873-5	chr2	38484440	38485440	+	989.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26757.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	6.67309080875457	6.65448439444936	6.78747033032227	6.58802419901873	6.91487429673678	6.80118203941899	0.121062010370143	0.643430248384449	0.899801366759477
Merged-chr10-44631146-2	chr10	44630646	44631646	+	543.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-172398.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.64071003061227	7.81576615098525	7.61184468729958	7.51844032804325	7.67586114144618	7.68685429954529	-0.0975175090131522	0.664854090130123	0.907721942545399
Merged-chr2-36240444-2	chr2	36239944	36240944	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 5 of 10)	intron (NM_008969, intron 5 of 10)	10018.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	4.13096687978796	3.98338306800168	4.27777503995861	4.23363696854554	3.97748987452263	4.46656773610909	0.27912637262603	0.574748300339427	0.870862343796639
Merged-chr8-105279146-2	chr8	105278646	105279646	+	846.583374	f1_balb.idr|f1_c57bl6.idr	exon (NM_030152, exon 2 of 4)	exon (NM_030152, exon 2 of 4)	2699.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	2.23607214284049	2.05218664583774	2.3541285588224	2.2951802857392	2.13054476859687	2.49104886328282	0.625426840490977	0.488187005568241	1
Merged-chr18-82635679-4	chr18	82635187	82636187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 13 of 29)	RLTR22_Mur|LTR|ERVK	57047.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	4.45177388947981	4.71669790660681	4.55376010398959	4.74383764446117	4.2420173535238	4.49398738997059	-0.184984500571302	0.68358866601255	0.915479407206029
Merged-chr12-85279140-2	chr12	85278640	85279640	+	706.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025421, intron 2 of 2)	L1MB3|LINE|L1	1295.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	3.37849542537654	3.31933587272817	3.43536942802164	3.42544291465218	3.2955387129218	3.28128034445643	-0.15608574303601	0.794433956324374	0.950711250903359
Merged-chr15-78571633-4	chr15	78571117	78572117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 1 of 6)	intron (NM_009008, intron 1 of 6)	1166.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	7.09033803026312	6.94679923918511	6.76501315221589	7.30555125226019	7.27756554099692	6.85573122102919	0.338733129690105	0.207954167290459	0.598797465200695
Merged-chr9-83537649-4	chr9	83537157	83538157	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-10681.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.82409541621486	6.10993213874783	5.87555617378323	5.49628365972934	5.60059776506218	5.95979578930026	-0.461536886529166	0.161339330550605	0.534168510920529
Merged-chr7-101092846-4	chr7	101092306	101093306	+	885.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15969.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	5.27535472266952	5.41850247110027	5.37838044208319	5.27039349941329	5.16752978653007	5.25558412412134	-0.260892044288213	0.446901593866439	0.806159145464037
Merged-chr6-30304522-4	chr6	30303993	30304993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169576)	promoter-TSS (NM_001169576)	46.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	8.40949427799096	7.95147092919313	7.60959444694374	8.18785633739298	7.81766064347389	7.50912256845088	-0.236167108046948	0.440370010730712	0.801759315323114
Merged-chr10-57784848-4	chr10	57784345	57785345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-78.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.8598343427902	7.20314132946993	7.13818464707992	7.0114075978697	7.18738405581732	7.04320208691649	0.0190425875376889	0.94006239623132	0.986782000249854
Merged-chr2-154605639-2	chr2	154605139	154606139	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1966.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	3.18594626075773	3.29892486543367	3.47986917407583	2.86909467903871	2.70417525618033	3.00070928568663	-2.3160208930223	0.00191401635839458	0.0298858084348463
Merged-chr10-122564689-4	chr10	122564182	122565182	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040616)	TTS (NR_040616)	5209.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	5.17406619146278	5.12766007471989	5.67969079386543	5.17369508664681	5.45519963586807	5.59115126424074	0.149927602938072	0.69512700854387	0.919230570201314
Merged-chr13-20379760-3	chr13	20379259	20380259	+	941.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-93231.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.79367898414857	2.87608583883136	3.01982861569368	2.87395816473471	2.89419945333711	2.97577999055717	0.0892043004947688	0.89747494300774	0.976030832923214
Merged-chr18-39458950-4	chr18	39458454	39459454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	28291.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.66324554088948	5.72944722118088	6.05529140369687	6.27066184508077	6.21429637514948	5.80462792373876	0.533588055143526	0.100396089890116	0.42256855923804
Merged-chr15-81360476-2	chr15	81359965	81360965	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011399, intron 1 of 8)	intron (NM_011399, intron 1 of 8)	300.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	6.83887702973032	6.81821591780422	6.53691648008769	6.61871648394208	6.69366208088461	7.06983032497726	0.0851855253440241	0.760894228660058	0.941046607439565
Merged-chr14-47445093-3	chr14	47444573	47445573	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-26666.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	4.78310139761636	4.47371932717993	4.46515631895551	4.47938581963969	4.6537642503303	4.30123799794261	-0.22098741471202	0.622748724057574	0.891249034616027
Merged-chr7-80420940-2	chr7	80420472	80421472	+	709.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-15536.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	2.73921730113143	2.96317006317521	2.90932654634615	2.77350476732672	2.55683135777934	3.09542883558132	-0.248830548082025	0.747425664033756	0.936609307885736
Merged-chr13-111967210-4	chr13	111966703	111967703	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	99267.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.36421026715043	6.7065142777934	6.27110025729125	6.12064030484445	6.56551381715502	5.79666705566451	-0.408441789043928	0.236501832360096	0.632745673713476
Merged-chr13-94105125-2	chr13	94104625	94105625	+	888.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	47329.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.42301893688893	3.07697512272594	3.47775371283339	3.41615789767487	3.32939474145671	3.32950344555499	0.099528305672743	0.874540565441451	0.970754540400126
Merged-chr6-98092373-4	chr6	98091868	98092868	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	100585.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.58980920560195	4.13121437320596	3.59485646010881	3.80521574333927	3.84395343708817	3.72392409877963	-0.0448730729910336	0.938377992642964	0.986378534817306
Merged-chr18-44760208-1	chr18	44759708	44760708	+	604.0	f1_balb.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	51974.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	5.13592559191256	5.46067485125045	5.19795182468381	5.03621967571242	5.20483888480586	5.09182036683334	-0.328376069484889	0.36940915655836	0.754116709983023
Merged-chr12-31943480-1	chr12	31942980	31943980	+	692.0	f1_balb.idr	intron (NM_177993, intron 2 of 8)	B4A|SINE|B4	6765.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.48468086952054	3.57476916966029	3.58283336509473	3.52765239141799	3.30193894323841	3.80131431813305	0.00937569199208426	0.987441480625772	0.997218304929226
Merged-chr4-103119791-3	chr4	103119295	103120295	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039081, intron 1 of 12)	CpG	405.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	8.14481772751793	8.15840834688568	8.15992665989252	8.25644590697928	8.22311843300309	8.20919970847261	0.106768456307907	0.595999509992275	0.879788660719508
Merged-chr4-86580232-4	chr4	86579720	86580720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4547.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	6.39142751614414	6.09419752486438	5.76838556838632	6.00994964305129	6.35198741269477	5.80373511666523	-0.0538324041567603	0.8762387480001	0.971251631220952
Merged-chr10-75300046-4	chr10	75299543	75300543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-16834.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	4.87064981393497	4.73827147554845	4.75285529148788	5.11510778551198	5.14382408637868	4.8984107322497	0.600867983758373	0.116268696878021	0.455227071796835
Merged-chr13-64260531-1	chr13	64260031	64261031	+	557.0	f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	RMER15|LTR|ERVL	11831.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	2.83235114373632	2.75468439861518	2.95656989642803	2.71523325633582	2.67359652968056	3.02814574311446	-0.194972042552641	0.790615098502538	0.949546067698202
Merged-chr13-99187672-4	chr13	99187162	99188162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2839.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.62244064923206	6.49252842813935	6.61261816035439	6.97364807607113	7.02673796897261	6.41278714636621	0.424368435539639	0.143859742524653	0.506314248201986
Merged-chr12-3981537-4	chr12	3981046	3982046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082483, intron 10 of 22)	intron (NM_001082483, intron 10 of 22)	26601.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	4.02885486295069	3.5100319249238	3.79008228928042	3.94962817728562	3.54012635927251	3.70248194550386	-0.177565582067352	0.761578028978874	0.941258867861232
Merged-chr5-135563505-1	chr5	135563005	135564005	+	657.0	f1_balb.idr	promoter-TSS (NM_001013412)	promoter-TSS (NM_001013412)	64.0	NM_001013412	541307.0	Mm.376459	NM_001013412	ENSMUSG00000070464	Ccl26	Ccl26l	chemokine (C-C motif) ligand 26	protein-coding	3.77694291100294	3.55722574714159	3.77958165402034	3.6274703040303	3.79902566084032	3.89724614008547	0.235690800129796	0.664677283407906	0.907719555092983
Merged-chr17-83645445-4	chr17	83644946	83645946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13551.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	5.48814110031503	5.47567195972337	6.01954957289652	5.65604266169961	5.63693958154943	5.93020060771062	0.124749491122811	0.722821809446616	0.928959550235296
Merged-chr7-141413629-2	chr7	141413129	141414129	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 1 of 7)	intron (NM_172116, intron 1 of 7)	496.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	4.2875884107155	4.30797556039155	4.54677427742242	4.3110670146384	4.37261802504579	4.57338159994382	0.103219371593059	0.817593755354881	0.956767881392089
Merged-chr9-70933005-2	chr9	70932505	70933505	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	MER97a|DNA|hAT-Tip100	1803.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	2.92254070680667	3.02527107361267	3.22722105257346	2.87849988987329	3.16341679628726	2.95294471624601	-0.223271337183434	0.74899300929142	0.937119726890419
Merged-chr7-16015797-2	chr7	16015297	16016297	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-16302.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	4.24197605922189	4.06641957598796	4.80871138165968	4.38161918441011	4.10269342660711	4.59357440363121	-0.0889584964803499	0.864382035261044	0.968278303984855
Merged-chr16-76406479-4	chr16	76405977	76406977	+	935.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32650.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.95513880667049	5.04404501745126	4.8113421026602	5.24615712736943	4.95109347926471	5.09945683011537	0.325101277003204	0.392627172557339	0.771214636708298
Merged-chr5-122422339-6	chr5	122421853	122422853	+	917.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-91.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	6.49890128158582	6.71605657437792	6.68255838133824	6.58016375014771	6.54833512164202	6.24434069126286	-0.253765798407298	0.357062926089089	0.743726917541594
Merged-chr17-15397011-2	chr17	15396511	15397511	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357822, intron 1 of 10)	intron (NM_001357822, intron 1 of 10)	765.0	NM_024203	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	5.51978774380399	5.98648643492605	5.61205686718873	5.75406355959207	5.95159953538429	6.00130941688512	0.311011414802416	0.350171994472318	0.7382090528516
Merged-chr15-78323940-2	chr15	78323437	78324437	+	855.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	2.71343126202367	2.57005816978512	2.93845109647446	2.83800555580829	2.81749506716903	2.95282187419496	0.642454963831983	0.385859073351392	0.766674506964127
Merged-chr7-49000994-4	chr7	49000482	49001482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	41909.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.40391851012281	5.63084216249637	5.43369849534782	5.73051493977227	5.39420123678775	5.46692009767895	0.0750542238355766	0.825701608379334	0.958897130914551
Merged-chr9-61671242-4	chr9	61670743	61671743	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243267.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	2.99749094100922	3.18475292004362	3.17905740754651	3.28545311728681	3.24818727908098	3.13313267116399	0.445981404955652	0.487359086323995	0.828421837588934
Merged-chr9-14500540-4	chr9	14500052	14501052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023153)	promoter-TSS (NM_023153)	-67.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	7.01751082596257	7.45460921373044	7.30005043817443	7.21944847223553	7.12015978077238	7.14527351812353	-0.163241155551147	0.518839566291395	0.845497711286192
Merged-chr10-10481133-8	chr10	10480654	10481654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-8840.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.38780270933432	5.89605806638313	5.89598760205914	5.93937423823121	6.09402109854039	5.61705977107189	0.292808677606629	0.405192892824513	0.780049815379569
Merged-chr4-135988041-2	chr4	135987541	135988541	+	618.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-797.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	3.61138779439635	3.93505232389361	3.52324998529044	3.62963188838939	3.56630487344401	3.85824354982083	-0.0865726553342444	0.880483042727027	0.972540920690587
Merged-chr18-27021733-3	chr18	27021221	27022221	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267564.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.72755915185716	3.68582572718555	3.75773034784362	3.83764025414555	3.78808091927288	3.87734631033964	0.359730724632851	0.489830790336841	0.829929554110118
Merged-chr12-84009466-4	chr12	84008982	84009982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012006)	promoter-TSS (NM_012006)	-20.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	7.1378566851802	7.03096154380737	6.87864605828909	6.54816894579419	6.41717315290354	6.49784230230423	-0.845688536791536	0.000940396378038562	0.0171597591718931
Merged-chr5-135911461-2	chr5	135910961	135911961	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018871, exon 2 of 2)	exon (NM_018871, exon 2 of 2)	23180.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	6.41204045594778	6.20072647430794	6.4116541993169	5.24186523233376	5.52724566890845	5.52799526794378	-1.60161388608557	4.84148384524981e-07	2.85912127605072e-05
Merged-chr3-81054275-4	chr3	81053773	81054773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	17857.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.89314139361278	6.72958167423316	6.48919115945697	6.37594842026545	6.86410010664924	6.51189545092519	-0.174085037120506	0.554914944036512	0.862989905297353
Merged-chr6-122575902-4	chr6	122575441	122576441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	22132.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	5.61077384568348	5.54472585335769	5.35329225483626	5.35945987626124	5.28261838114488	5.69751839435104	-0.131673222946954	0.705735964521459	0.922834459892351
Merged-chr10-117848744-3	chr10	117848247	117849247	+	896.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2773.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.67082250693	3.51602406067484	4.05884976048154	4.10049176336531	3.77571257615543	4.41281006063959	1.07143377869119	0.0649537057118259	0.332296740178092
Merged-chr16-87634286-4	chr16	87633754	87634754	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64700.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.92968291749119	4.54720699710615	4.6527569951725	4.67588975126681	4.40112278375247	4.55396800230919	-0.429111671802763	0.320906004358409	0.714648154651698
Merged-chr9-57148275-4	chr9	57147758	57148758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357409)	promoter-TSS (NM_001357409)	47.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	7.3564428039996	7.67398499406354	7.59903020816762	7.27656975541283	7.43176601738468	7.22251812232042	-0.33908567459561	0.159712596111487	0.532021525971601
Merged-chr1-191186002-7	chr1	191185531	191186531	+	973.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2698.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	5.73665955557729	5.47467690097478	5.21796995677262	5.45108177089338	5.08096028175294	5.10478702274282	-0.54812584973566	0.145131801231603	0.508211721104252
Merged-chr7-16047114-4	chr7	16046656	16047656	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24689.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.01530822064879	7.08686357539656	7.20219589774046	7.39646699484173	7.22703173161371	7.3930348879273	0.356604749710573	0.131470537200705	0.48479293843552
Merged-chr10-8072727-4	chr10	8072194	8073194	+	941.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-116571.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.08385015581061	4.17513577237572	4.27496998794162	4.16991923691902	4.14428711768257	4.20915114798773	-0.0079588985824054	0.98636130436605	0.997033990984076
Merged-chr11-98790003-3	chr11	98789521	98790521	+	870.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5495.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	5.29164951107668	4.99044409222949	5.22668370777525	5.41033444533168	5.34849544776416	5.52786652536982	0.503635887517994	0.153571205404751	0.522532447327076
Merged-chr16-31292666-2	chr16	31292166	31293166	+	774.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17389.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	2.49167683572791	2.42046516371986	2.27167675190212	2.65785744365133	2.37769443135434	2.67822327816417	1.04681066900922	0.220789179204668	1
Merged-chr2-32982888-4	chr2	32982353	32983353	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-770.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	5.40026605795092	5.33902187970184	5.41397113042918	5.4949229962756	5.7080251377844	5.47726772767984	0.365180448528842	0.270363334945965	0.667299602638099
Merged-chr4-33261442-4	chr4	33260955	33261955	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12668.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.52205892703679	3.60990302376275	3.33272875197276	3.67461643719552	3.70290016857213	3.74140451572229	0.713125914302342	0.213109384543371	0.605842142465242
Merged-chr18-3355066-2	chr18	3354566	3355566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	MTC|LTR|ERVL-MaLR	-17477.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	2.55067570051146	2.70064055889399	2.87796840228339	2.7417169859844	2.76261783849774	3.17135286957435	0.952097695365537	0.2154141014226	0.608899282194137
Merged-chr6-72392123-2	chr6	72391623	72392623	+	609.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1456.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	3.8760892745293	3.39684423588314	4.14849732519041	3.97455685711939	4.23705592296461	3.9371033230529	0.657114879069614	0.2699630145056	0.666963156307406
Merged-chr19-25119891-2	chr19	25119391	25120391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 15 of 47)	intron (NM_028785, intron 15 of 47)	-117084.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	2.23830536279085	2.09945578173342	2.3060048414097	2.08676792966048	1.89390678251394	2.18679436070819	-1.21635024860912	0.20728208124581	1
Merged-chr2-33887257-4	chr2	33886752	33887752	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 1 of 9)	CpG	694.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.25339367262604	5.32181717518904	5.48212783234654	5.58838683361459	4.95705195196387	5.06747142521473	-0.228645039805544	0.558933007592239	0.86489961641779
Merged-chr9-65545804-4	chr9	65545288	65546288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34299.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.19971201249266	8.13172734935768	7.92388398373445	8.06628897740045	8.14939596091579	7.68349704371849	-0.147294409731797	0.542067409540144	0.857034750433211
Merged-chr1-43501469-3	chr1	43500991	43501991	+	933.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	55740.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	7.07270782405566	7.0246505761072	6.47267936914803	7.40335760212502	7.68809956224297	7.20956376410632	0.83592652645675	0.00451677939609247	0.0569701652251117
Merged-chr1-173973392-3	chr1	173972908	173973908	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 3 of 6)	intron (NM_008327, intron 3 of 6)	9436.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	6.43070285376005	6.26826538825474	5.84949050005935	4.32940347254359	4.11476351455015	4.49659648555911	-4.35694714152862	3.82760005427546e-21	3.03320900301097e-18
Merged-chr13-34344286-5	chr13	34343771	34344771	+	723.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033167, exon 1 of 11)	exon (NM_001033167, exon 1 of 11)	911.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.39910240382586	5.1246415371376	5.31605434029895	5.14178065029238	5.09882972630169	4.67892317963905	-0.58163325556616	0.137701670195807	0.496055094538607
Merged-chr11-114899954-2	chr11	114899454	114900454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 6 of 6)	intron (NM_170758, intron 6 of 6)	9913.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.79948482501811	5.49248375761698	5.87022705477074	5.63565202517816	5.32699405133558	5.81414030536347	-0.239688108529207	0.492393017889976	0.83104217378051
Merged-chr3-9783335-3	chr3	9782856	9783856	+	766.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	50323.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.46779592002242	3.03936093937449	3.07931935390087	2.88976378099061	2.71431082562582	3.09321773145294	-1.45310296875975	0.0500713703144285	0.284952309529424
Merged-chr13-23745610-4	chr13	23745104	23746104	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175653)	promoter-TSS (NM_175653)	-83.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	7.94022608189033	8.51971294331106	7.83586352751381	7.99041452877445	8.52297457589437	7.67074376610828	-0.0305739125316567	0.923206559911906	0.982693984177635
Merged-chr8-33668829-1	chr8	33668329	33669329	+	570.0	f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	L1_Mus2|LINE|L1	15591.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.89723262807295	2.82283570696152	3.06549267346568	3.61540067340323	3.57808205074401	3.64913309494602	3.28318140676325	1.07279910656617e-05	0.000425478875401132
Merged-chr3-88460154-6	chr3	88459641	88460641	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	-1040.0	NM_001163490	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	5.25350548625697	5.06244708070776	5.26283998474576	5.03376486347802	5.26160188649265	4.94888084446324	-0.18959150130263	0.609894269529453	0.885331420927875
Merged-chr3-15284628-4	chr3	15284131	15285131	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47671.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	7.67802977112593	8.0782677004357	7.10168069560742	7.33230842430625	7.57702100148143	7.30154943506703	-0.40411453697526	0.190645240770936	0.577134837486971
Merged-chr15-93273114-2	chr15	93272614	93273614	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	2065.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.41924781074225	3.47259298713249	3.42164158749478	3.11699313877113	3.21145611539842	3.38329979670173	-0.810684055888997	0.187784714153443	0.573022975476005
Merged-chr7-80223507-1	chr7	80223007	80224007	+	556.0	f1_c57bl6.idr	intron (NM_001360135, intron 12 of 13)	intron (NM_001360135, intron 12 of 13)	9298.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	2.06689370897137	2.08604842602046	2.35162808178387	2.29228167817341	2.18930637493024	2.54954360525493	1.226015606432	0.178664093881734	1
Merged-chr2-45091127-2	chr2	45090627	45091627	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	19150.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.10597763552129	6.13548003786991	6.34774049232007	6.22570069970944	6.19687834794953	6.54574834771508	0.215558456485872	0.460357256193169	0.814477170345238
Merged-chr7-34195826-4	chr7	34195303	34196303	+	840.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 3 of 6)	B2_Mm2|SINE|B2	867.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	5.74479053323254	5.90397844690139	5.91813372029259	5.78704329378812	5.7402891863802	5.73155975680503	-0.182501088839002	0.548291344138499	0.859628922276836
Merged-chr16-58478551-2	chr16	58478051	58479051	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44875.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.68508204321291	6.60502129464195	6.53268024742052	6.97201462028371	7.00426877588015	6.71272136487837	0.46518370105485	0.0720196847664575	0.352439618930124
Merged-chr14-73509949-4	chr14	73509440	73510440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-109.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	5.80376619644682	5.65044151459155	5.78210937046202	5.78840427145948	5.69932174522133	5.28085973211604	-0.228216086157182	0.50019997902462	0.834967798557197
Merged-chr3-105023551-4	chr3	105023035	105024035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	29418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	8.08732148086516	8.31507457114757	7.77731200843006	8.07101422592923	8.39100912828338	7.86841843324914	0.0710839277778352	0.787900053664894	0.94877064431094
Merged-chr5-72224641-4	chr5	72224162	72225162	+	954.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21319.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.71502777368949	6.26549498061439	6.47616631352775	6.52378404441484	6.63798837959597	6.26096407385958	-0.0105267886718509	0.97159416720284	0.99377981119604
Merged-chr15-82348339-3	chr15	82347864	82348864	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026914, intron 2 of 2)	intron (NM_026914, intron 2 of 2)	2318.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	3.45296274320243	3.25035190183306	3.56984022762732	3.57708952497678	3.26849735955724	3.63961276085237	0.269511366631811	0.659711251905485	0.905590171712941
Merged-chr4-114983340-4	chr4	114982788	114983788	+	871.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	3940.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	5.3011420534083	5.69793797490192	5.58739236984428	5.97344036783009	6.06180115885102	5.91021534920115	0.808993728867598	0.0123142781233928	0.116320981368933
Merged-chr8-117481997-4	chr8	117481520	117482520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16255.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	6.95809425094187	6.70488158887062	7.14664466243083	7.10374839564419	7.3779315140509	7.09266616445304	0.399638858858551	0.132295686526713	0.486542094594663
Merged-chr16-15889683-1	chr16	15889183	15890183	+	546.0	f0_c57.idr	TTS (NM_007679)	TTS (NM_007679)	2397.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.24274076962238	5.34062120545523	5.57939465123721	5.72244645828543	5.84256992994279	6.02335851063557	0.892561272956114	0.006951632916758	0.077735717207042
Merged-chr10-127608588-2	chr10	127608163	127609163	+	664.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	12485.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.07711368872328	5.3485749111996	6.35662119689332	5.5221308301944	4.91181822065362	5.71234658526319	-1.03434193893149	0.0189893731716879	0.156071489813296
Merged-chr7-51862279-4	chr7	51861768	51862768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115087)	promoter-TSS (NM_001115087)	-1.0	NM_001115087	100040608.0	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding	6.44357995088477	6.40932427952453	6.67023385571286	6.70100317708335	6.18924339520387	6.44266627170467	-0.0787969751815632	0.789458281687278	0.94921167421876
Merged-chr12-83520414-4	chr12	83519929	83520929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030246)	promoter-TSS (NM_030246)	-37.0	NM_030246	73828.0	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	4.27187536151151	4.10818417711422	4.36674830841165	4.07557789747737	4.09998140176863	3.86563314221327	-0.62952063454526	0.200411354928474	0.589383990811298
Merged-chr16-35747560-2	chr16	35747060	35748060	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	L1MC4a|LINE|L1	21796.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.75902919810014	3.925404444193	3.90174490925034	3.95867375592637	4.02568506620147	3.86991658930666	0.29311831648602	0.56379523246027	0.865992481769395
Merged-chr16-23305430-2	chr16	23304930	23305930	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	14960.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.93878425613594	4.94243231038873	4.99787051503989	4.98252443524109	4.94360982897632	4.9188526631324	-0.0174581701152185	0.962492134254401	0.990858153530085
Merged-chr2-116899740-2	chr2	116899240	116900240	+	735.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-412.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.35342111014648	4.03795850119663	3.81564926126308	4.28585611338528	3.96245599106404	4.04823478303867	0.0242656001364618	0.963258735088269	0.991082197093192
Merged-chr11-102407556-4	chr11	102407060	102408060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-43.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	8.49351978011595	8.45970317388552	8.14609054708275	8.40252825104748	8.56822948435418	8.00079000916464	-0.0375221589679928	0.88110572718528	0.97262624933271
Merged-chr13-37833716-4	chr13	37833203	37834203	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	6310.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.19780506680734	5.21703348946406	5.34909002835595	4.90631502285135	5.00820380449791	5.13258807630691	-0.494467972170833	0.171214622878201	0.549224104532435
Merged-chr4-132158423-4	chr4	132157919	132158919	+	883.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13933.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	3.95889653576599	4.20527596274833	4.13510698118065	3.9091054352313	3.86676913326107	4.52743547107124	0.0667807368903255	0.901302151755881	0.977176770690314
Merged-chr11-79624407-2	chr11	79623907	79624907	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1244.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	5.55469112567387	5.49814886112913	5.23160212571559	5.29776768064581	5.21821320437606	5.04643117625282	-0.489944439462518	0.168114655539925	0.544489675690557
Merged-chr2-33371466-4	chr2	33370945	33371945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290572)	promoter-TSS (NM_001290572)	49.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	4.27114162114359	4.18597383551416	3.92853824596156	4.33648321114194	4.10200127106194	4.15266790054983	0.151213248492672	0.756652587352705	0.939652679558287
Merged-chr15-58326114-2	chr15	58325614	58326614	+	686.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1945.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	4.45424924593548	4.75859739095774	4.33703462235559	4.38397439382701	4.55493379680703	4.3114609414788	-0.273754849685364	0.548072025247274	0.859503669232264
Merged-chr12-91710712-4	chr12	91710213	91711213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	L1Md_A|LINE|L1	75723.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	6.11847254072846	6.22265126148274	6.24215062734168	6.20560112194048	6.19860370463728	5.89524832185632	-0.126851127526434	0.662999827013076	0.906962312269491
Merged-chr1-184845924-4	chr1	184845407	184846407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-60.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	7.18788282098319	7.24678429385876	6.9245570517396	7.0117293788676	7.25500879000535	6.96841313499577	-0.0640197776547305	0.802511052488927	0.953208478742901
Merged-chr5-135169931-2	chr5	135169431	135170431	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009745, intron 1 of 5)	intron (NM_009745, intron 1 of 5)	1559.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	5.25978068125288	4.82730029766152	5.17853379696234	5.12586721780847	5.22217168263037	4.96404779155376	0.0369858845536925	0.923732783528691	0.982733195971172
Merged-chr11-98202184-1	chr11	98201684	98202684	+	578.5	f0_balb.idr	Intergenic	Intergenic	-1121.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	6.85280720919729	7.30114731292745	7.21196633093041	7.0534348167187	7.53218997487774	6.94243974136139	0.117099327612738	0.689287204841663	0.917319650405699
Merged-chr2-25255438-4	chr2	25254935	25255935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252541)	promoter-TSS (NM_001252541)	-4.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	7.94684386234188	8.14125135501235	7.87545519199715	8.09498287050138	8.08061216202848	7.84036276801258	0.0260002690087657	0.908094813480208	0.979108668058273
Merged-chr11-96977821-4	chr11	96977328	96978328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-140.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	7.87509297480243	7.43147713690409	7.55192258779945	7.95074128167601	7.74670137052294	7.51737389558363	0.170631404063084	0.508476354270243	0.839818423824339
Merged-chr9-116063262-4	chr9	116062778	116063778	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	ORR1E|LTR|ERVL-MaLR	112085.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.18225517535631	2.91084219762503	3.18889052346852	2.83375084773138	2.64969227978292	2.71907964299886	-1.87723144512916	0.013175769064339	0.12188208919461
Merged-chr10-67222523-2	chr10	67222023	67223023	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	36773.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.97621504029284	4.82647132326036	4.98714700909444	4.90892039975909	5.15199589932207	5.11968475886762	0.297346464818179	0.429370808577218	0.795682190695026
Merged-chr6-115668245-4	chr6	115667722	115668722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	7666.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	6.83610873676709	6.98014827870028	6.67784745023117	6.62213812067114	6.98871342068473	6.52588746438091	-0.158452090134708	0.573606844936157	0.870251558775855
Merged-chr5-138207426-3	chr5	138206925	138207925	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13111.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	7.15949878478873	7.3922557851251	6.76783514303916	4.28872916838396	4.0625031692171	4.62347344401784	-7.19641128598106	4.89165823775597e-24	7.14079120433682e-21
Merged-chr10-93309785-4	chr10	93309300	93310300	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	1359.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.7924537170938	5.56230605203093	5.92126952027822	4.94878770811256	4.76589246297795	4.7114556515118	-1.91742020852146	3.05159945947344e-07	1.90771966809817e-05
Merged-chr18-73574049-12	chr18	73573627	73574627	+	945.569458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039214, intron 1 of 1)	intron (NM_001039214, intron 1 of 1)	1422.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	7.08931246056372	7.22882772292925	7.27844377893975	7.20203904716842	7.22082227050092	7.05436122436795	-0.0480266090002879	0.839827964099644	0.962784121274377
Merged-chr12-52097765-4	chr12	52097270	52098270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029760)	promoter-TSS (NM_029760)	24.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	5.36038550863366	5.47545668793413	5.69323335883379	5.59768492781101	5.5312637647969	5.5697205547761	0.110823018473385	0.736991803842704	0.933459380685649
Merged-chr19-10304989-4	chr19	10304496	10305496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-119.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	7.16538427943136	7.15319334836268	6.56116501064515	6.6182458457839	6.32253401368947	6.06371616254886	-1.00162541600161	0.00163878520799559	0.0265034090547905
Merged-chr14-22845642-3	chr14	22845131	22846131	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	248940.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	2.45627877042902	2.54473587408892	2.66918897631647	2.4328704880013	2.17307014221831	2.62189101798745	-0.84469957271666	0.338568851561749	1
Merged-chr9-32198921-4	chr9	32198435	32199435	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 9 of 21)	(CAAAA)n|Simple_repeat|Simple_repeat	-25314.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	3.62115469292914	3.79017783299858	3.89384101950314	3.56068794282793	3.67953152748	3.66387647847331	-0.442860833010738	0.418565754238141	0.788713693524327
Merged-chr2-174440052-4	chr2	174439516	174440516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-977.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	7.42332066132425	7.20821150606556	7.11181411294041	7.03744536434227	7.03207445689219	6.79825772158418	-0.440497489498252	0.0803883965464284	0.37523159810498
Merged-chr4-139229405-3	chr4	139228893	139229893	+	796.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	35282.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.56330094327088	5.07367068527299	5.69541241340327	5.58799314326605	5.51724811202541	5.2338588451456	-0.00223344280640596	0.995298185840372	0.998961028701257
Merged-chr13-55022176-2	chr13	55021676	55022676	+	807.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206392)	promoter-TSS (NM_001206392)	-791.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	7.51243912971693	7.39773721247538	7.6292158576148	7.82988580264619	8.17085513037706	7.56025056279234	0.541222346366704	0.0363486845432693	0.234602958693481
Merged-chr1-180941176-2	chr1	180940676	180941676	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1342.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	3.32740858264481	3.36334964275405	3.50314988097204	3.26701714914303	2.95685029393498	3.06393956281819	-1.25625799116314	0.0565646118020999	0.30666068665814
Merged-chr8-123254792-3	chr8	123254291	123255291	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310661)	promoter-TSS (NM_001310661)	-569.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	5.98595932805882	5.85973512111932	6.06593914704932	5.79489632022738	5.88097754218801	6.01749452935469	-0.126154513796062	0.673773883208719	0.91163657550036
Merged-chr18-78142219-4	chr18	78141715	78142715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-96.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	8.00100026803035	8.25859617412041	7.99700649789378	8.16362074729917	8.51901883250489	8.03793661874867	0.238829276071876	0.326495781190452	0.71871363873492
Merged-chr14-79516454-4	chr14	79515967	79516967	+	797.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	793.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	7.51063485668249	7.76902878238341	7.13119231191388	7.54595447038861	7.85949044510569	7.06351087821168	0.0539213231402814	0.862257780030722	0.967996224966109
Merged-chr17-17895592-4	chr17	17895093	17896093	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7769.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	5.37830320644629	5.10856576906979	5.62682535777112	5.37016527935143	5.48564315339465	5.76183782872182	0.318385679692808	0.382436673439336	0.764000781517693
Merged-chr7-121075097-4	chr7	121074583	121075583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-553.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	8.28022277764747	8.77708033617306	8.2804075995433	8.23873517255848	8.52042755733023	8.19212719780355	-0.199891612192632	0.42799107452518	0.79478410196054
Merged-chr1-172147399-2	chr1	172146899	172147899	+	735.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	-616.0	NR_151641	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	5.74892853983754	6.03198033082934	5.84344868901072	5.96448222623855	5.78594374382328	5.9994896564656	0.0514528714466387	0.867493356981019	0.96935413537256
Merged-chr19-4124651-2	chr19	4124151	4125151	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 1 of 6)	intron (NM_016666, intron 1 of 6)	1207.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	5.0704961190148	4.96733808181454	5.58959067357531	5.42303889852703	5.32327830720677	5.34804379714884	0.284291867944085	0.457101877157208	0.812004739475898
Merged-chr13-113636108-4	chr13	113635625	113636625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17561.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.81488964299839	6.95869645108068	6.43275854425798	6.48522687053988	6.83972949376941	6.33011466716441	-0.285004480536298	0.351415172465738	0.739299452698803
Merged-chr2-59889442-4	chr2	59888946	59889946	+	790.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-6840.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.54064107877818	4.8445689269321	5.00011833496268	4.42480340046037	4.69191890799005	4.63727320644045	-0.49661507464476	0.250832899991707	0.648197271421781
Merged-chr11-3185115-4	chr11	3184616	3185616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	8347.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.82652859412404	7.06060261633185	7.27673254321897	7.01541980395856	6.82309540140155	7.66233893663994	0.224540304427348	0.48157869914063	0.825155479553839
Merged-chr8-72587683-1	chr8	72587183	72588183	+	617.0	f1_c57bl6.idr	TTS (NM_001357278)	TTS (NM_001357278)	15860.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	3.17740001205576	3.17349791983602	3.46425828293271	3.69565141122278	3.96500534938367	4.24354829819502	2.64285894937031	3.41844972305093e-05	0.0011506568145454
Merged-chr6-113305825-2	chr6	113305325	113306325	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_170673)	TTS (NM_170673)	-1312.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	5.2538318784371	5.28792013092439	5.54502190125231	5.6152684214589	5.70711428169306	5.60737302107031	0.55430022821593	0.094178855614382	0.408807669568652
Merged-chr3-69127762-4	chr3	69127259	69128259	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-667.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	8.056726402879	8.14509094532185	7.84303473878095	7.62243150516369	7.88463090627409	7.35889978039466	-0.535460047288207	0.0340127308884637	0.225642520434378
Merged-chr8-25098932-2	chr8	25098432	25099432	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2879.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.78363692295879	5.67422067795846	6.00103929030561	6.29234951958781	5.96665513125081	6.16870684885227	0.572224996772241	0.0641358527319399	0.329929893917728
Merged-chr9-124037016-2	chr9	124036516	124037516	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15045.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.54102478246687	6.74806172218363	6.66632342946932	6.61891359000255	6.70601598036464	6.44501994224795	-0.0819217482063172	0.757336568977342	0.939861209437025
Merged-chr11-62551089-4	chr11	62550590	62551590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-81.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	8.68027655819011	8.98429566929455	8.41724434848317	8.58509135274371	8.86873952462012	8.31169943552877	-0.144974189992491	0.579287444626409	0.872463147987439
Merged-chr5-114444166-4	chr5	114443661	114444661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023556)	promoter-TSS (NM_023556)	-108.0	NM_001306205	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	6.20139395183228	6.12138296968812	5.99426080154087	6.49655323043628	6.44118994928219	6.07982046383051	0.413323815814717	0.160780845512058	0.533494234902646
Merged-chr11-120458054-4	chr11	120457547	120458547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025560)	promoter-TSS (NM_025560)	23.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	7.36999136268992	7.1552239942785	7.21996846272876	7.05880139603445	7.28570186065666	7.33416596356876	-0.0330939972524574	0.891672391213612	0.974893585547628
Merged-chr4-102513868-5	chr4	102513391	102514391	+	715.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	MER44B|DNA|TcMar-Tigger	-56169.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.54649647190262	2.52462802899948	2.69454838519925	3.28333124461485	3.46272389421856	3.49413317571385	6.84735936603006	1.3207533653366e-07	9.14286572570114e-06
Merged-chr8-119394174-2	chr8	119393674	119394674	+	548.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-718.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	4.82436429731899	5.58161975157313	5.47231573783723	4.94470107963274	5.18151264479357	4.96085725267456	-0.60095081437091	0.153592185808163	0.522532447327076
Merged-chr5-139410555-2	chr5	139410055	139411055	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	4168.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	3.73605951541127	3.52221016903032	3.82120589306242	3.39919703392962	3.21394863231078	3.540058546717	-1.15597675467858	0.0544590586722027	0.299693077739533
Merged-chr10-20893564-4	chr10	20893085	20894085	+	943.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58962.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.88433101241576	3.83296532011545	3.68920889582877	3.93710915345784	3.87506626535178	3.76040748523753	0.167471020604098	0.74887162749871	0.93711275444937
Merged-chr17-46773575-2	chr17	46773075	46774075	+	707.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025966)	TTS (NM_025966)	940.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	4.74911239231712	5.16990243586204	5.3682840181501	5.29427299286878	5.28233152534736	5.45896620160469	0.469840860882463	0.225243716182585	0.620063864646258
Merged-chr1-131561572-2	chr1	131561072	131562072	+	774.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	33669.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	5.95657998737539	5.59604998996414	5.88168962173509	5.13577101700263	5.14036351011396	5.5432275658056	-1.03562682279148	0.00340209502450246	0.0462023050104131
Merged-chr18-56753664-4	chr18	56753163	56754163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010721)	TTS (NM_010721)	45850.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.89991952127229	4.57049723287763	4.31265571071076	4.61974638660578	4.53204725870969	4.5216291684013	-0.167830450050147	0.709165210597881	0.923909555179111
Merged-chr7-30553566-4	chr7	30553072	30554072	+	910.4583130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_128568)	TTS (NR_128568)	270.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	3.44892814262762	3.39538313521939	3.72812374428039	3.72741856820352	3.92097836985896	3.79780481124719	1.0288226551609	0.0674751732444508	0.339715266855707
Merged-chr2-128714518-3	chr2	128714012	128715012	+	687.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15597.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.27734449043818	7.13689182711701	7.28815278035132	7.42726568782636	7.73755224804942	7.13737038534765	0.348183420962963	0.187797079771586	0.573039693924755
Merged-chr6-50559330-2	chr6	50558830	50559830	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7144.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	4.08827222106465	4.11812073493976	4.54417126919294	4.54855593613098	4.56415706858579	4.86250510717639	1.03177049158498	0.0268420406222876	0.195063101842734
Merged-chr2-93129395-4	chr2	93128864	93129864	+	912.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58184.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	3.68223398172662	3.46967112320199	3.78078055929241	4.01052554496499	4.1823055230034	4.184706656324	1.54221040703619	0.00375888365353226	0.0496537848933342
Merged-chr10-24633232-2	chr10	24632732	24633732	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	37790.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.85479062206035	5.2996252868216	5.10711952334041	4.95065616397294	4.8784000827884	5.07045460713552	-0.299114902881684	0.44144247591389	0.802612160730754
Merged-chr18-69509595-2	chr18	69509092	69510092	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	163432.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.82475687632373	3.00594750688081	2.5994581128642	2.81512772199624	2.55207387628393	2.86861030429822	-0.381051924500955	0.629624237532714	0.894364606069187
Merged-chr7-28373401-4	chr7	28372901	28373901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-739.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	6.87593737602421	6.67154736629261	6.61690280950761	6.60583205077986	6.93238703217436	7.01586532894874	0.203141238917275	0.454601838890477	0.810475441600934
Merged-chr8-25694854-4	chr8	25694366	25695366	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081269, intron 15 of 22)	intron (NM_001081269, intron 15 of 22)	-25182.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	3.44142905699743	3.74668287652862	3.68108713352679	3.4944226428008	3.69244873669846	3.59325403670808	-0.103430647733897	0.856357751569192	0.966498502206484
Merged-chr16-94556446-4	chr16	94555944	94556944	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13762.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.91213581422463	3.71437046999416	3.95633847897981	4.07458199331921	4.07538059880731	4.16503437162692	0.733084946089855	0.142403009919538	0.503768764353502
Merged-chr2-165923197-3	chr2	165922698	165923698	+	867.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-38360.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.39969650218437	6.07844237452735	6.34176351822252	6.33575972936931	6.56829441117873	6.54529460879948	0.344957399358498	0.224269780447212	0.6190426237005
Merged-chr14-20372052-4	chr14	20371552	20372552	+	978.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	16858.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	4.63204782767702	4.77188503994903	4.56215428166848	4.7403311022454	4.55151663321003	4.40766600155754	-0.205471109655327	0.628497601865914	0.893765060420619
Merged-chr10-128697334-2	chr10	128696834	128697834	+	564.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016756)	TTS (NM_016756)	-1066.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	4.90249996197964	4.97634194556494	5.21437412236478	4.98722185985561	5.00323500511973	5.21588378138161	0.0801819253340021	0.831471452917594	0.960464332375456
Merged-chr19-17126212-4	chr19	17125835	17126835	+	738.3125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	170217.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	5.56058657599978	5.71238357026963	5.72087105914519	5.19019472542529	5.50622023300253	5.57278670273953	-0.439119416118883	0.193990686940561	0.581296310830689
Merged-chr14-58201476-4	chr14	58200974	58201974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	128788.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.93671661530196	3.84058049168563	3.80061701599493	3.8929575392218	4.05803469872048	3.92252484106875	0.311068030193707	0.540013554787666	0.856245552500013
Merged-chr6-5233864-3	chr6	5233354	5234354	+	737.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173006, intron 5 of 8)	intron (NM_173006, intron 5 of 8)	22379.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	2.76462924700038	2.71978796679931	2.92072723848642	2.57423384398085	2.66710022598737	3.04806977272544	-0.141254869632225	0.853648472555519	0.965752330271851
Merged-chr16-92421630-2	chr16	92421130	92422130	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-21552.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	2.91814250337067	2.66142290889656	2.94363951009505	2.65085610755315	2.58423953542106	2.71633748659669	-1.05912289758804	0.161663061193685	0.534783258167936
Merged-chr16-49801679-4	chr16	49801188	49802188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53966.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.52793472088066	4.65030727717965	4.80386672603765	4.45161390400623	4.67374041091401	4.68243744751486	-0.122191621097818	0.771035812384954	0.943565600102578
Merged-chr4-155563518-4	chr4	155563030	155564030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	-285.0	NM_001159637	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	7.67904395606347	7.59079392020923	7.12305423200742	7.53252340510114	7.59016510092994	7.44412072578875	0.0423299998289918	0.869351499812718	0.969788171765313
Merged-chr2-156196761-4	chr2	156196286	156197286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172674, exon 1 of 18)	5' UTR (NM_172674, exon 1 of 18)	139.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	8.91777724795481	8.74105236525677	8.33322325916827	8.65363363269848	8.53038998988815	8.17500068123586	-0.302949111936644	0.239776720711344	0.636751711516597
Merged-chr9-90072822-2	chr9	90072322	90073322	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 9 of 10)	intron (NM_001312649, intron 9 of 10)	18555.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	2.45973033341069	2.42830183379979	2.56147710224586	2.69324530892124	2.6132688780806	2.69813382999166	1.09904256469949	0.156462289036437	1
Merged-chr17-23828510-2	chr17	23828010	23829010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026305, intron 2 of 3)	intron (NM_026305, intron 2 of 3)	599.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	5.32521366812865	5.62239258455504	5.97777615460811	5.84898979105108	5.56328076910475	5.8595998143671	0.18384558418654	0.606043351499785	0.883842874272091
Merged-chr8-25980880-4	chr8	25980367	25981367	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4123.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	7.24712226828775	7.32820266188268	7.38844995490708	7.19255484583501	7.18026418319828	7.3610018367174	-0.116082118574047	0.617810455417985	0.888975260249014
Merged-chr7-90022192-2	chr7	90021734	90022734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-6925.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.36627234943956	6.37127935815812	6.59760833078729	6.07431743963876	6.26407684414492	6.55976213661506	-0.224378780302563	0.444833348755959	0.804512062173139
Merged-chr2-153117288-4	chr2	153116753	153117753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	8785.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	7.06122199922982	6.83214517331015	6.54118872546361	6.72180189930545	6.92335359026092	6.83303531351889	-0.0134741701264756	0.960940225488493	0.990386809359123
Merged-chr12-119370048-4	chr12	119369560	119370560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73350.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	5.76321954804857	5.54234261769674	5.58234164169232	5.74353938193526	6.02477820897575	5.80698381869803	0.427667778266335	0.180027940550696	0.561649914789184
Merged-chr10-34171912-4	chr10	34171416	34172416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	35635.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.88858143667426	6.74204374558379	6.84349420176678	6.71768477395124	6.67974653896243	6.97052477701418	-0.0592422743852328	0.817819094326217	0.956835450074313
Merged-chr15-98533324-3	chr15	98532753	98533753	+	800.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153345, intron 2 of 10)	intron (NR_153345, intron 2 of 10)	1016.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	6.78761635722516	7.09020265073765	6.81264099688447	6.8110819951302	7.16784532706505	6.60645781943138	-0.0180195990666999	0.949902045529814	0.988334422516281
Merged-chr17-6967836-4	chr17	6967347	6968347	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6691.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	3.82482393751052	4.06838491977069	3.93687121724492	4.26904675024931	4.39110817856795	4.10860826215044	0.91183287368915	0.0640574550574722	0.329853818983591
Merged-chr10-68725199-4	chr10	68724683	68725683	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1437.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.28100413398677	7.38229408924842	7.01284447078657	7.71994499697505	7.77253635531834	7.35260352027108	0.576294526269119	0.0252544877701804	0.188160406373672
Merged-chr2-161109748-2	chr2	161109232	161110232	+	788.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-646.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	3.52622308656717	3.46036159060463	3.6594101257084	3.29182142563443	3.2887232600114	3.47120232412268	-0.75812744466785	0.200637578839432	0.589833651076578
Merged-chr4-99177463-4	chr4	99176974	99177974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16460.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.37271152985085	6.38472575441481	6.48408644127172	6.78837485866906	6.54745963076492	6.67809841860663	0.418780017215736	0.113028068768273	0.449191427529329
Merged-chr6-97296883-2	chr6	97296372	97297372	+	836.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 21 of 23)	intron (NM_145148, intron 21 of 23)	-44092.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.26016789710247	3.11876208347808	3.50351844241979	3.39294400595853	3.41086694344144	3.18268506390034	0.161924982375575	0.799361324639017	0.952248176414355
Merged-chr16-85084351-4	chr16	85083845	85084845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	89362.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.36612846741592	3.22289709114461	3.71232394741118	3.2512073211611	3.2087413980589	3.26514369424488	-0.791587868730706	0.213738081943205	0.606900020244801
Merged-chr9-65345323-1	chr9	65344823	65345823	+	543.0	f1_c57bl6.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	-745.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	4.58903136397268	4.32381799509124	4.74379959401852	4.59525065224522	4.33216170615453	4.62078555830632	-0.0994439635834564	0.823870300050964	0.958451755471188
Merged-chr14-12284197-4	chr14	12283688	12284688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	-15.0	NM_001284384	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	6.47091755011131	7.0401381163789	6.73377153087591	6.91344199441593	6.93858540099971	6.6616017676142	0.117249219067831	0.684536790151473	0.915930759709583
Merged-chr17-22361496-6	chr17	22360949	22361949	+	996.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176962)	promoter-TSS (NM_176962)	-4.0	NM_001347330	224598.0	Mm.390945	NM_145484	ENSMUSG00000044501	Zfp758	BC021442	zinc finger protein 758	protein-coding	6.7174831076677	6.96098274779998	6.75526110491541	6.70379740840606	6.75693667619159	6.71944147090976	-0.143115933924445	0.574160099831316	0.870523174873875
Merged-chr1-45819153-1	chr1	45818653	45819653	+	774.0	f0_balb.idr	intron (NM_028599, intron 16 of 20)	intron (NM_028599, intron 16 of 20)	23987.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	5.40035869402268	5.30528991091083	5.03421229159647	5.22099818325892	4.43822533377543	5.06423673613769	-0.656218953526573	0.13633309479214	0.493337529361954
Merged-chr6-112930282-4	chr6	112929787	112930787	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 1 of 21)	intron (NM_080448, intron 1 of 21)	16979.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	3.33466001645656	3.58091871719516	3.643121629038	3.14679223122877	3.23783643443162	3.29471831314615	-1.19712602092274	0.0553952118679942	0.302667594005651
Merged-chr5-135774967-2	chr5	135774467	135775467	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	3334.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	3.08648014231087	3.16083799124895	3.3529927890582	3.30846869063479	3.21870073317582	3.36957976059774	0.405208371828234	0.517793363618471	0.844737935317774
Merged-chr19-6059367-2	chr19	6058867	6059867	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160239, exon 5 of 5)	exon (NM_001160239, exon 5 of 5)	1400.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	4.18089685131213	4.29635249767077	4.69274528238257	4.47230575703787	4.82395096296624	4.93177588687177	0.871013575978053	0.0593850078060417	0.315577195652389
Merged-chr4-129812201-4	chr4	129811674	129812674	+	919.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-8305.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.98037021839451	7.6894533508852	7.52988096938767	8.26274025708498	8.36582168039559	7.50018326961629	0.503977611911106	0.0934693028110701	0.407193389963535
Merged-chr3-100436859-4	chr3	100436362	100437362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	10457.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.09615447119706	3.80951579557264	3.73160474496733	4.34328908253361	4.29451395930264	4.02400454704585	0.974000052851666	0.0612745626736823	0.321005717493657
Merged-chr6-92101189-4	chr6	92100682	92101682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8749.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	4.41581767034956	4.3854301269854	4.40587176866279	4.30089415433351	4.36122983474952	4.74472854519544	0.178926945033994	0.691451366828223	0.918326102826144
Merged-chr14-67717387-2	chr14	67716887	67717887	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	1289.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	2.78348458692487	2.95682754133474	2.98932958254851	3.02717458742562	2.86927553267604	3.00269365389257	0.260846937750402	0.70570616990654	0.922834459892351
Merged-chr1-16657101-4	chr1	16656597	16657597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037998)	promoter-TSS (NR_037998)	22.0	NM_001310470	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	7.74217335683433	7.68042362607363	7.52821620303349	7.50529051247705	7.75791979982475	7.60448351932641	-0.0392277932424317	0.86414773827013	0.968269312109804
Merged-chr1-135535488-4	chr1	135534973	135535973	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	49882.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	7.17632619585525	7.50050161866418	7.05706335142582	6.68952003711363	6.76956145311451	6.92389326699439	-0.71964967126082	0.00634239343027738	0.0727613225625976
Merged-chr9-123529683-4	chr9	123529176	123530176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-77.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	7.53209805038715	7.5701050188974	7.49210350406686	7.61956501791135	7.3570377039199	7.42449510316774	-0.0913907260267433	0.690066169575055	0.917647283737153
Merged-chr15-6326228-6	chr15	6325745	6326745	+	823.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	26456.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.51042732559108	3.1356112205055	3.59425177669016	3.47939676105179	3.38876638419563	3.4536942807334	0.0608920600053461	0.921863969373811	0.982542868764899
Merged-chr9-108342524-4	chr9	108342018	108343018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3438.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	7.77943626034999	7.61608802765783	7.50137570029466	7.84173154360632	8.05508549695222	7.63815435077864	0.319909671032208	0.185088397899236	0.569157596821747
Merged-chr15-88867318-3	chr15	88866827	88867827	+	827.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5133.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	3.44980431927816	3.58436001611081	3.78419432394819	3.45171935159439	3.43601588423215	3.26269361525439	-0.795710208647575	0.186565817224009	0.571251831447116
Merged-chr10-16874360-2	chr10	16873860	16874860	+	729.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221422.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.89861444010032	2.99427324621523	2.96970411327876	3.10517840585982	3.45864044033062	3.44426215281792	1.7246655022504	0.0113771580516856	0.110154825129702
Merged-chr13-108268416-4	chr13	108267915	108268915	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-47922.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.3395860495068	3.67686895597621	3.32548333752882	3.33603497731457	3.7432069579655	3.62270733760628	0.419919507539454	0.500820553118421	0.835260125938228
Merged-chr2-117344116-4	chr2	117343621	117344621	+	937.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.23658357143054	4.99570790717097	5.01953783644045	5.5217453774731	5.49293252104955	5.19339756363174	0.657400222332332	0.0694654358823997	0.344847030606635
Merged-chr15-63123268-3	chr15	63122774	63123774	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	356334.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.85652977927143	4.77175749258463	4.7411754972635	4.70570882236296	4.89472589593143	4.64447140921888	-0.0692869358414247	0.86250882543985	0.96807605498315
Merged-chr15-57975645-1	chr15	57975145	57976145	+	828.333313	f0_balb.idr	Intergenic	Intergenic	-10258.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	5.72070150932697	5.72234424952343	5.55892766419049	5.78597321916422	5.82788449702228	5.56322326869445	0.117526682082887	0.711455341438882	0.924661173262022
Merged-chr7-100497115-3	chr7	100496623	100497623	+	843.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011671, exon 4 of 8)	exon (NM_011671, exon 4 of 8)	3765.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.83523154978165	5.33377669755549	5.87633454459619	5.53103773775771	5.56920267014026	5.86827272015756	-0.0753097961747195	0.832303795497795	0.960616839788396
Merged-chr2-167769944-4	chr2	167769444	167770444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78767.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.93284140990446	6.92960103424237	6.89751088933903	7.22193878770296	7.07857818815632	6.86711169890061	0.227322758526542	0.361892345636148	0.74753801781726
Merged-chr2-26902954-4	chr2	26902434	26903434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-47.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	6.36967845002383	6.78946982428171	6.7389970454027	6.56625990284734	6.77848126799995	6.65574194242586	0.046355847522197	0.867908499094316	0.96949791771456
Merged-chr2-113656102-4	chr2	113655574	113656574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-29016.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.45815712824468	4.51162158374693	4.54363779809534	4.13314122072026	3.78335725498627	4.23052599102662	-1.25110882988275	0.0101078198043143	0.101160869650876
Merged-chr3-95233118-2	chr3	95232618	95233618	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 3 of 4)	intron (NM_001038708, intron 3 of 4)	4175.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	4.32133446854273	4.58130920523674	4.28607314130392	4.59647462528799	4.69802408989075	4.73700822973263	0.650637860051432	0.133873215411466	0.489188990731953
Merged-chr3-87337271-4	chr3	87336787	87337787	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-20594.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.93954575529875	6.69566203305291	6.79240070163516	7.36879176689683	7.66942479074309	7.22265840816525	0.946950213682376	0.000281506633271314	0.00660564126938508
Merged-chr13-43774367-4	chr13	43773869	43774869	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10743.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	2.24100200820154	2.4082363086427	2.15999814438984	2.4204790552741	2.33068349339069	2.56614402242853	1.04194245867291	0.238594768475809	1
Merged-chr2-118727469-1	chr2	118726969	118727969	+	609.0	f1_balb.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	969.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	5.01427471018917	4.92692275777641	4.99477564171829	5.27360736357926	5.34015703245136	4.86873168664797	0.446080822713347	0.242766619435788	0.63992054177032
Merged-chr12-111556218-3	chr12	111555727	111556727	+	901.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	15281.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	2.44359153320511	2.27378995441494	2.22343355544158	2.47912086757836	2.56135392470319	2.56635032112828	1.36759563287255	0.112311105895947	1
Merged-chr6-88522845-3	chr6	88522341	88523341	+	723.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4041.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	2.74821073201715	2.9623237083106	3.0503652979585	2.64611120547871	2.53115804392338	2.89418210313173	-1.21983943193077	0.115626029569939	0.454013999738356
Merged-chr8-66494595-4	chr8	66494107	66495107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8077.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.87251209834376	4.51236885941163	4.52905347764232	5.12898805656529	4.83554577854616	4.72698020451795	0.582262210021866	0.172003086197974	0.550528994401747
Merged-chr10-23077049-2	chr10	23076549	23077549	+	713.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256921.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	4.98418715105652	5.37804362159583	5.29578571167157	4.96248616943836	5.2839225157244	4.95168236447469	-0.29195813216235	0.4521160233292	0.809286173636239
Merged-chr5-142920933-4	chr5	142920444	142921444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14190.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	7.02654832781414	6.78127438554822	7.32557347313162	7.37178081673261	7.39525416521773	7.42461610474736	0.513363892026439	0.0479496367126539	0.277589464383671
Merged-chr5-118478377-4	chr5	118477887	118478887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82332.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.31996356154788	4.89357023810513	4.58577301349086	5.06231267848326	4.78055072293718	4.51412049985988	-0.367289729424243	0.426351327824778	0.793775990271191
Merged-chr19-47068486-4	chr19	47067971	47068971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177342, intron 1 of 10)	CpG	723.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	6.68477481527364	7.10916561839524	7.04398775040865	6.99318346622911	7.02887433827203	6.83703254079905	0.00422763977936421	0.987299644354855	0.997218304929226
Merged-chr9-56207317-4	chr9	56206825	56207825	+	906.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172924, exon 7 of 7)	exon (NM_172924, exon 7 of 7)	-46255.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	3.01766660086863	3.12693498268718	3.22569375430223	2.82787569230756	3.00921231926521	2.95143413251385	-0.869637231706728	0.205842308596984	0.596452389390508
Merged-chr1-16161627-4	chr1	16161121	16162121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	55739.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	5.75108099008794	5.75023683130506	5.61446362334321	6.3153395068703	6.28201885785558	5.87149126701002	0.819952751815231	0.00881139277288568	0.0922120953145858
Merged-chr7-120947850-3	chr7	120947350	120948350	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	30106.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	5.16994003780697	5.0588391065144	5.25583298426699	4.51602800978383	4.76798887728222	4.73385063304591	-1.05916081938751	0.00714017694353292	0.0793005663531083
Merged-chr1-131287056-4	chr1	131286563	131287563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7500.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.81045065676409	4.44676432124196	4.76409714172665	4.68249493769908	4.52867076948253	4.86523910632285	0.022675884733609	0.957751338451262	0.989969855526119
Merged-chr17-44432986-4	chr17	44432457	44433457	+	905.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244385.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	4.06062691332683	4.04890291025829	4.22343836772267	4.24113541566913	3.97367490768472	4.06062220455088	-0.0382648362141648	0.937135658391006	0.986041955253459
Merged-chr7-143055521-2	chr7	143055022	143056022	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-1836.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	5.25616451163589	5.21922039754859	5.56749486126912	5.30064636396352	5.64906883511505	5.65536198187938	0.386690619092567	0.274866452998865	0.672244072104214
Merged-chr13-107753357-2	chr13	107752857	107753857	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	65960.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	2.96594347123102	2.68191956993998	3.27933079923024	3.00387476802302	2.79859080503566	3.02124124080963	-0.235771989718966	0.752434630474539	0.938249434524264
Merged-chr11-61176411-3	chr11	61175869	61176869	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	3.22198684405872	3.42379864645317	3.33856964363868	3.22482919945382	3.18526345140836	3.40934435572103	-0.245396052839805	0.691588444806237	0.91839466501919
Merged-chr13-42053416-2	chr13	42052916	42053916	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	1395.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	7.04003885477109	6.91154521920607	6.61072750608061	7.16595641911988	7.09789746553537	6.59752219051685	0.173198623764186	0.552493565372237	0.861752012062404
Merged-chr3-95674381-4	chr3	95673890	95674890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13527.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	8.34350665073265	7.99815004175275	8.12095170570884	8.33030055908434	8.69549176847853	8.22415844242875	0.385919674208295	0.113962567984752	0.450859089500984
Merged-chr4-129826844-2	chr4	129826342	129827342	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	6134.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.77736439753972	5.82631063883352	5.86455234580791	6.04912125457042	6.44743233943347	5.99918610809575	0.647073359238934	0.0376123065418532	0.239764406859306
Merged-chr9-40583738-4	chr9	40583235	40584235	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52352.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.2134059485809	3.13035562549521	3.57845671878402	3.10988768023726	3.34832809048348	3.64709343407616	0.254176779201346	0.703106587936309	0.922108924938678
Merged-chr3-81101579-4	chr3	81101092	81102092	+	916.0125119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	B1F|SINE|Alu	65176.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.51956899742975	6.6794762361569	6.8083378552064	6.49712407079513	6.48649153605159	6.86605147933657	-0.0801273129934092	0.773567888198049	0.944125377137732
Merged-chr11-87461938-4	chr11	87461436	87462436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	34345.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.35332728011472	6.13887611752286	5.81185685818913	6.11178641097366	6.06911721271146	5.79279015874463	-0.214422054392893	0.504329668457786	0.837634550662405
Merged-chr15-103239959-4	chr15	103239480	103240480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-128.0	NM_001076789	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	7.73423556563314	7.763278634363	7.61239593578038	7.73869496578688	7.91753247885186	7.7061612237603	0.125753077818765	0.57107962789265	0.869376721278598
Merged-chr14-56034608-4	chr14	56034108	56035108	+	939.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4113.0	NM_010782	17232.0	Mm.436621	NM_010782	ENSMUSG00000071361	Mcpt9	MMCP-1|MMCP-9|MMCP9	mast cell protease 9	protein-coding	2.16290745575089	2.24922891671427	2.19662720120277	2.34424309298872	2.24002844170497	2.71298484692467	1.56891812706381	0.0809921051300275	1
Merged-chr16-91684930-2	chr16	91684430	91685430	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3798.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	4.02881986380336	3.86552419226218	3.74940731914422	3.92988669610294	3.9290235044128	3.97511469820314	0.155010337401374	0.761784609302816	0.941318402670338
Merged-chr6-124359525-1	chr6	124359025	124360025	+	606.0	f0_balb.idr	Intergenic	L1M4|LINE|L1	-2439.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	6.32696923382419	6.34497078281319	6.3240518915461	5.92841616687905	6.33755699511558	6.22508828987511	-0.253050415029675	0.384459659813646	0.765551950936269
Merged-chr15-102285082-2	chr15	102284582	102285582	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5626.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	3.10461873368963	2.8196249144841	3.39683593702712	3.19868251103341	2.77482144128629	3.31148902094053	-0.0486631174461071	0.948438956050105	0.988138842484406
Merged-chr17-65728860-2	chr17	65728360	65729360	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	43892.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.31740523760028	4.30175576958458	4.42395908547927	4.87544252363705	4.82373507402375	4.44758014521889	0.970787965749315	0.0259133808349242	0.190847990132092
Merged-chr18-60977514-2	chr18	60977014	60978014	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 14 of 17)	intron (NM_177407, intron 14 of 17)	13960.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	3.6073403946478	3.84278974030906	3.66177215386081	3.79664027870113	3.63215754267824	3.78416224130452	0.0794733635099462	0.883832377151765	0.973446344549744
Merged-chr17-46645234-2	chr17	46644734	46645734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	846.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	6.73328421043439	6.88190853615713	6.35904570817372	6.45858854650468	6.69117863141289	5.950649634317	-0.424449426351029	0.202547165722175	0.59252027125208
Merged-chr9-63737616-4	chr9	63737126	63738126	+	834.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	20368.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.57939485051313	5.19011767643588	5.02192784201233	5.36926778111032	5.16967699518625	4.75905896190923	-0.325932466826473	0.433657032141423	0.797909324825555
Merged-chr14-21848989-4	chr14	21848489	21849489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026965)	promoter-TSS (NM_026965)	-79.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	5.99295698542621	5.86490367527508	5.88347259844141	5.73775981178504	5.70966706584093	5.19768976399369	-0.595016486767993	0.0826803321945009	0.380407248064143
Merged-chr2-69014252-2	chr2	69013752	69014752	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-121548.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	3.89404019596651	3.97171899682063	3.80608703171654	3.89794523440647	3.94827290500504	3.97710599663627	0.133202004078101	0.791480163837846	0.949748707968383
Merged-chr11-116096583-4	chr11	116096062	116097062	+	896.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-9567.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	5.558174991465	5.89048306953865	6.07087347940324	5.65336082364631	5.91158674572581	6.30358565295589	0.221510112592461	0.530592082021418	0.851247637658821
Merged-chr2-145740224-4	chr2	145739719	145740719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	39024.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	7.72504041153587	7.90068938687098	7.86176124758525	7.55920569500798	7.50359055819518	7.25688551944807	-0.547285557180404	0.0181235007620871	0.151596561377232
Merged-chr14-72644793-1	chr14	72644293	72645293	+	568.0	f0_balb.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	65210.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.40155412910807	3.2529617033576	3.36032602366723	3.78478615880475	3.60418298694035	3.94816943061505	1.60088177133508	0.00690519956232686	0.0773263668410175
Merged-chr1-171554116-1	chr1	171553616	171554616	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-5077.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	4.00636030407302	4.03267221043801	4.10042936091914	3.29816494398531	3.30874029773961	3.69104438802691	-2.190881565662	0.000257592570065638	0.00616089754815224
Merged-chr4-16089117-3	chr4	16088603	16089603	+	912.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74540.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	6.88456035637564	6.85022301745005	7.01184839979404	7.00708119729216	7.29651088482965	6.74619615236504	0.207930100697666	0.443524707204736	0.80383358753004
Merged-chr9-78176645-4	chr9	78176144	78177144	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040401, exon 2 of 4)	non-coding (NR_040401, exon 2 of 4)	730.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	8.44691425343678	8.73465795694175	8.3183125090068	8.58721816843501	8.8638619494271	8.22316262334351	0.105353376060902	0.68451878689169	0.915930759709583
Merged-chr18-23802948-2	chr18	23802370	23803370	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	-1100.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.92083753872504	4.83012854929018	4.72883759785514	4.27765627388685	4.53039484383232	4.83161457278567	-0.648220597069726	0.135338398793936	0.49154257303863
Merged-chr6-120481766-2	chr6	120481266	120482266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 13 of 13)	exon (NM_008359, exon 13 of 13)	12041.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	2.6799131409292	2.60417129787573	2.85018537867579	2.40086144400502	2.58124488541916	2.68611860941482	-0.856803318824503	0.281243553622717	1
Merged-chr10-117952292-4	chr10	117951792	117952792	+	965.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26833.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.26531313937289	6.19520689908535	5.99550704780638	6.2405369583609	6.25035682124784	6.0803442892666	0.0556923570223919	0.846143497616744	0.963961283421434
Merged-chr1-172203759-3	chr1	172203250	172204250	+	665.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	3054.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	4.1364042888878	4.27360475109008	4.70651240934696	4.15275135552062	4.03075640935923	4.55595168445258	-0.341374911320595	0.504170423443847	0.83751412120853
Merged-chr12-102372070-2	chr12	102371570	102372570	+	717.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	MTEa|LTR|ERVL-MaLR	67743.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.19433372492654	4.46921270466629	4.38181742750449	4.58927617364387	4.54299380824386	4.21569378029139	0.292839683356331	0.523437290660287	0.84820746264669
Merged-chr9-99139672-4	chr9	99139154	99140154	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	CpG	557.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.12296480913812	7.13431605871075	6.98680410249837	7.34357903282102	6.95151057476319	6.93131425557376	0.00813116025082386	0.97504751462131	0.994418938322767
Merged-chr3-95016263-4	chr3	95015717	95016717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-760.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	8.30989134457533	8.53890802832569	8.31223188909043	8.43179667777709	8.62088792791543	7.98281138936739	-0.0175653697312572	0.94443968855514	0.987719484242428
Merged-chr6-136683850-4	chr6	136683345	136684345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER74C|LTR|ERVL	-21952.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.05810792013785	4.88139971196922	5.05695639913101	5.88714402510308	6.22675686787295	5.67023001645109	1.85271733403146	2.02357704977292e-07	1.326854209279e-05
Merged-chr1-119913201-4	chr1	119912720	119913720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175106)	promoter-TSS (NM_175106)	-52.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	4.32445582786819	4.37225521953736	4.25985359780242	4.31217238001935	4.41863714013322	4.41681892487993	0.158387073534755	0.719966657644664	0.927970408310442
Merged-chr11-121736334-3	chr11	121735835	121736835	+	766.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33908.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	3.02356005576967	3.03703509930242	3.30550453829605	3.17142041296401	2.92129097353271	3.26859702835984	-0.000307770684356627	0.999635894734456	0.999920050950963
Merged-chr3-88422550-4	chr3	88422046	88423046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	2595.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	4.82355968650913	4.72644613174967	4.87681412018947	4.87384696418902	5.27117520735386	5.01447913407212	0.583534717795304	0.135729718255683	0.492469297371423
Merged-chr4-95216179-4	chr4	95215697	95216697	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-163975.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.59888845755037	6.82580972308037	6.49507747549541	5.71712076726173	5.96402826803244	6.05420841636865	-1.2262067053684	3.02915072803458e-05	0.00103681437177417
Merged-chr2-12350579-3	chr2	12350093	12351093	+	896.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149732, intron 14 of 15)	intron (NR_149732, intron 14 of 15)	-48649.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	3.46255066283371	3.53577102232663	3.36055750000183	3.30089189443133	3.54543791896521	3.19113215210955	-0.353891370648512	0.572267817856531	0.869807909725036
Merged-chr16-35937284-2	chr16	35936784	35937784	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013371, intron 1 of 4)	RMER15|LTR|ERVL	-1186.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	4.00172443184867	4.1030617435413	4.19499503647642	4.0362991323864	4.42941373141567	3.97215545549357	0.218496183124774	0.665280318826592	0.907762144972922
Merged-chr8-85556692-2	chr8	85556192	85557192	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1421.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	6.82826326063669	7.14997429443309	6.88493446482394	7.40180776336974	7.75912775379237	7.38808345659584	0.846419498792655	0.00121799675846919	0.0210176429445675
Merged-chr3-103790230-3	chr3	103789702	103790702	+	897.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	1073.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	6.22018839624345	6.24470340591631	6.18735902354682	6.21623119324957	6.10982681343495	6.24755369423059	-0.0541265843310615	0.844991434836922	0.963760118842549
Merged-chr11-70803883-4	chr11	70803386	70804386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	8675.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	7.78905286169731	7.62861775869615	7.47899672517788	7.47164207270911	8.07666021459	7.58671319020743	0.154159596251665	0.568027192416905	0.868489297597577
Merged-chr2-131159622-3	chr2	131159128	131160128	+	888.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154887, intron 1 of 6)	intron (NR_154887, intron 1 of 6)	453.0	NR_154887	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	6.24639776944449	6.22451831474585	5.88806432974841	5.72191976854026	5.96502372128193	5.27892037473301	-0.755811324335962	0.0344644084891897	0.227458714231486
Merged-chr11-115422181-4	chr11	115421719	115422719	+	912.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183285, intron 2 of 5)	intron (NM_183285, intron 2 of 5)	2093.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	5.68820103796767	5.61838743910293	5.77069826591409	5.70208806400932	5.29204596281034	5.2162261061974	-0.498626476370227	0.152582458210407	0.520800770480414
Merged-chr6-95718691-6	chr6	95718027	95719027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011507, intron 1 of 10)	CpG	319.0	NM_011507	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	5.70652252662848	5.98904903283263	5.70588333316891	5.89037311702272	5.44994931775369	5.24010354895027	-0.455555585684457	0.207856326077112	0.59868364609575
Merged-chr5-140806492-3	chr5	140805985	140806985	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	23946.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.26759958389777	5.44159954186534	5.09594131630431	4.59851958522473	4.72402317898654	4.91060398505166	-1.16893481041092	0.0025732473104237	0.0375113458664568
Merged-chr2-26550040-4	chr2	26549534	26550534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31022.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	3.24298759791482	3.25903675745566	3.28963480785465	3.2092129277913	3.09374274226873	2.93814704355323	-0.746547948100554	0.256406937327775	0.653552886970565
Merged-chr2-133497127-2	chr2	133496627	133497627	+	616.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55032.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.98286325104385	5.77353420083107	5.79787221249311	5.40382372889738	5.63061732748949	5.90697405164554	-0.367432624935685	0.267048449418971	0.66453138559114
Merged-chr19-41318542-1	chr19	41318042	41319042	+	555.0	f1_balb.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-54538.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.44271371226249	3.71184816749588	3.96225116788398	3.53807068202509	3.49418151724309	3.54092444324181	-0.66692932160296	0.254690295272584	0.651754308411513
Merged-chr4-132795350-1	chr4	132794850	132795850	+	1000.0	f0_c57.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1014.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	8.38261839470678	8.05325036594426	8.09962863514255	8.63214502915043	8.89111472656531	8.20453225323238	0.591342021643937	0.023483716373332	0.17959862794046
Merged-chr18-36242298-4	chr18	36241780	36242780	+	799.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38882.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	4.16229026486749	4.08172444562785	4.00463868264058	4.19517264652031	4.11073633710159	4.17047583080177	0.194979279375898	0.680565888807175	0.914307131165517
Merged-chr2-128715688-7	chr2	128715178	128716178	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	16763.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.65475575870069	6.43660271873258	6.55395342661825	6.72018972837522	6.89797108327571	6.50549732320785	0.2816421511002	0.3021428196695	0.69891305259052
Merged-chr10-39451290-4	chr10	39450791	39451791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	81492.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.98015902417953	7.10621553727662	6.78676340831572	6.80096152479563	7.05928428758754	6.84515338629731	-0.0901613195170896	0.728084345899868	0.930391495870939
Merged-chr5-115347764-4	chr5	115347262	115348262	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007748, intron 2 of 2)	intron (NM_007748, intron 2 of 2)	1193.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	4.70941890477894	4.54285316724557	4.70921481405196	4.56271502100648	4.96686134727698	4.81310104142557	0.336541706476236	0.418895359126604	0.788758778768065
Merged-chr3-30860252-2	chr3	30859752	30860752	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	L1_Mus2|LINE|L1	4302.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.29936103494665	3.39916599937679	4.14349503907739	3.37849625190105	3.15088049593198	3.74307047923252	-0.758723629038733	0.278083469508597	0.675410094336204
Merged-chr2-13575325-6	chr2	13574759	13575759	+	970.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011701, intron 1 of 8)	intron (NM_011701, intron 1 of 8)	948.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	5.64486608313961	5.65953692129161	5.67495046694277	5.14533095669863	5.2050924039429	5.09918497653848	-0.982516072607965	0.00344906618367026	0.0467258057653591
Merged-chr12-85111886-2	chr12	85111386	85112386	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030225, intron 2 of 14)	intron (NM_030225, intron 2 of 14)	1053.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	6.31316825404102	6.07905202883799	6.0387264053117	6.02817308000578	6.05395694587493	6.16525850616078	-0.128234383646556	0.65939327810409	0.905402077619558
Merged-chr8-90954953-4	chr8	90954478	90955478	+	855.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	22729.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.93872385833788	5.01213223743482	5.20162682463726	5.575511581686	5.65423329975207	5.51013097527389	1.07728860010401	0.00177392120018482	0.028152667408922
Merged-chr1-58718704-2	chr1	58718204	58719204	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	5418.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	4.17818325801729	4.39924931872153	4.54422269727888	4.13528455456517	4.1469836575606	4.60927756096493	-0.1886522699419	0.697321266551024	0.919885660903951
Merged-chr9-111563491-4	chr9	111563026	111564026	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	124445.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.14772182144097	5.02643756327024	5.6918654118219	5.39566934655137	5.34000109901685	5.46921006749718	0.183108919362551	0.63258963293399	0.895571551612667
Merged-chr2-180725250-4	chr2	180724758	180725758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183161)	promoter-TSS (NM_183161)	-81.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	5.55858034312858	5.73641392406206	5.89334572036169	5.67624644056594	5.61320616772633	5.7631986799294	-0.0884483336108558	0.781891558429811	0.946316742076881
Merged-chr4-149303391-4	chr4	149302904	149303904	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4294.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	7.16747836214322	7.18046712920142	6.90851809080783	6.8465203511026	6.98839537814554	6.78463605990957	-0.330013146205808	0.190479260238618	0.576866179651861
Merged-chr14-8224082-4	chr14	8223593	8224593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027782)	TTS (NM_027782)	7845.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	5.4385626950945	5.28650275129676	5.57863577293018	5.53780198984744	5.57111109730223	5.06529675743229	-0.0153988538717702	0.966403417831777	0.992302763946523
Merged-chr3-105899953-4	chr3	105899447	105900447	+	937.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-4474.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	5.34128618904749	5.05494411255563	5.24150256570326	5.16282814765027	5.24613395435194	5.20829440890838	-0.0176947717045666	0.960441432796055	0.990380695859216
Merged-chr16-32188722-2	chr16	32188222	32189222	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18B|LTR|ERVK	8922.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	5.24648665820828	5.17825403747526	5.25631616721133	5.58030852340301	5.00513664336209	5.49820127222517	0.299866623877741	0.428230651901931	0.795060269171428
Merged-chr6-38982856-4	chr6	38982355	38983355	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	ORR1D2|LTR|ERVL-MaLR	63869.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.01564739064633	5.94352985397059	5.89559140267643	5.95350795338875	6.40338863485246	5.82905995907504	0.256307073678917	0.429206518212567	0.795664831623734
Merged-chr14-20885700-4	chr14	20885203	20886203	+	960.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43695.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	4.73693656859376	4.9445944007787	4.90703037204992	4.72386223978029	4.66769178070949	4.82664113873709	-0.29764361277883	0.450651496562037	0.808443910792592
Merged-chr6-128797556-2	chr6	128797061	128798061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8920.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	2.54614941985332	2.6069139633026	2.67682529973421	2.65612908608005	2.58430920940161	2.74982692508974	0.294986426722001	0.69450940677417	1
Merged-chr15-77799647-4	chr15	77799155	77800155	+	773.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	42520.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	5.32837546577062	5.40776565469108	5.74926039301781	5.66113514426801	5.62019132907972	5.83425184386745	0.388130465748008	0.249576998917719	0.646517945454549
Merged-chr10-78463644-2	chr10	78463144	78464144	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	1304.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	4.3089804257369	4.37788216721366	4.15156049744972	4.21122473891197	4.02852457857652	4.07362714394361	-0.511576768490682	0.27823972791134	0.675555045695919
Merged-chr10-127596171-4	chr10	127595684	127596684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24964.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	9.0866201705782	9.07356664196659	8.83142719023645	8.81033593239241	9.17075168704692	8.65869187163678	-0.137045612338774	0.558669101507418	0.864744077984264
Merged-chr5-130223545-2	chr5	130223045	130224045	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027854, intron 1 of 6)	ID_B1|SINE|B4	1210.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	3.16044394771599	2.99565879928564	3.12079207802587	3.07093902381729	3.17376617228166	3.07470141302472	0.0777275861650754	0.905086756897169	0.978232606263309
Merged-chr12-8313405-4	chr12	8312894	8313894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021429)	promoter-TSS (NM_021429)	-39.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	7.04512542584377	7.3722717064802	6.99280853255299	7.00954547944926	6.82179955058549	6.45603985869899	-0.552472733177415	0.053323381667027	0.296028893893688
Merged-chr4-139233142-4	chr4	139232667	139233667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	39056.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.69084476425663	7.31725957386302	7.08367421939005	7.15830752841687	7.44014995120661	6.94233642672331	-0.281870276923035	0.328351656007832	0.720562985671201
Merged-chr4-139189771-2	chr4	139189271	139190271	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3128.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	4.09819880146365	3.79392337136036	3.82669239082369	3.82071674003314	3.59830091698427	3.68424232997232	-0.695922209685578	0.199093065936784	0.587481591514486
Merged-chr6-108756125-4	chr6	108755614	108756614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-26945.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	4.05587298578373	3.9555121313633	4.16889782820978	3.9329816236217	3.82168523353927	4.19231771929007	-0.229269602562382	0.650232928371388	0.902576889668442
Merged-chr17-48275639-4	chr17	48275110	48276110	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172623)	TTS (NM_172623)	11315.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.72848980775948	5.69204738061142	6.16202935608631	6.12875303874362	6.41354100674651	6.20196450525593	0.679765352951394	0.0314134880987918	0.214743141449578
Merged-chr4-95230646-4	chr4	95230159	95231159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178437.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.30412065650622	4.35267600028671	3.92663347192482	4.02472984690432	4.2278843717099	4.09953818960827	-0.263329621300635	0.597456055347065	0.880423686413152
Merged-chr13-23537722-2	chr13	23537222	23538222	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR48A|LTR|ERV1	2304.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	2.38377937010245	2.21567222277932	2.51465473291835	2.18917588495934	2.29639896201908	2.27435912932076	-0.798747578113228	0.358057435686068	1
Merged-chr10-20673908-4	chr10	20673420	20674420	+	909.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	51158.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	6.28869977191546	6.56567450209487	6.45849294921493	4.80341107863753	4.85071643093094	5.36909587810133	-2.694552062609	4.03562937954947e-14	9.81861547992842e-12
Merged-chr4-134703849-4	chr4	134703359	134704359	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_207237, exon 1 of 12)	5' UTR (NM_207237, exon 1 of 12)	431.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	7.72347532239861	7.5268958862579	7.36215515760843	7.45119116359869	7.01251780003345	7.25915123045774	-0.44377727431685	0.0859982909044913	0.388266185001677
Merged-chr11-53893213-3	chr11	53892723	53893723	+	949.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	5.71663836213172	6.1221132792241	6.06409469692281	5.88244406672397	6.14436248263932	6.2075359335928	0.183024722456827	0.561722656624745	0.865571255453378
Merged-chr1-36710098-4	chr1	36709614	36710614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146107)	promoter-TSS (NM_146107)	-189.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	6.80623351690242	6.88155072968849	6.62825600402062	6.88878233072295	6.80704033022172	6.6182606888141	-0.00218328199162637	0.993300599972104	0.998651348330892
Merged-chr17-63499117-3	chr17	63498575	63499575	+	898.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	1505.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	5.42521810372171	5.13189101761404	5.45454178331612	5.17075634983496	4.76593096997274	5.4051020419068	-0.435300429516521	0.27437642465257	0.671721462492876
Merged-chr2-144010524-4	chr2	144010090	144011090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	CpG	673.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	9.19367937662295	8.93846329574595	8.91296121701541	8.99932937975462	8.7247708752672	8.99990763245856	-0.152397549331011	0.48048972378539	0.824543506620807
Merged-chr19-41278405-2	chr19	41277905	41278905	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14401.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.23560478432337	2.8913673918395	3.16911244677098	3.01747147737662	3.03056699430633	3.18411966001502	-0.130839001741739	0.84645806770864	0.964017504522256
Merged-chr5-148493199-4	chr5	148492671	148493671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58502.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	7.12329891615252	7.10685583789087	6.56005533741182	6.29213736079113	6.12976592984714	6.39554347875742	-1.10914576319281	0.000157535327507053	0.00413507871646904
Merged-chr3-96595435-4	chr3	96594934	96595934	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	5.75967627123224	5.19022549541555	5.22423615256644	5.21939518400787	5.05517368312034	4.96385941244632	-0.684138372701993	0.0807656973503944	0.376005826953036
Merged-chr11-69121583-5	chr11	69121172	69122172	+	868.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033041, intron 2 of 3)	intron (NM_033041, intron 2 of 3)	1219.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	4.18869812616714	3.89554261414571	3.89196372805242	4.51793178305804	4.13921034605078	4.5564750381528	1.11387449405908	0.0279088117826825	0.199510758377405
Merged-chr11-75155331-3	chr11	75154819	75155819	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	12833.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.16036666038662	5.43685652231165	5.31540754981199	5.55012442204915	5.51550538042138	5.44074090874895	0.378680576941134	0.264648275056244	0.662600158599023
Merged-chr7-43920763-4	chr7	43920260	43921260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13011.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	7.26420522516563	7.25276492268728	7.3711687289043	7.18826311835706	7.32546262921923	7.35334986222082	-0.00517835041766007	0.982108390568914	0.995980212202506
Merged-chr7-28675230-4	chr7	28674700	28675700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17649.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	5.55409589970063	6.00799963094143	6.21423346766586	6.36020918911063	6.47402155465565	6.42480956860786	0.803574057212092	0.0118329037939083	0.113050976947557
Merged-chr9-124053721-4	chr9	124053230	124054230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31759.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	5.81465561820048	6.12368457220921	6.32657996323695	5.95617722145843	6.13693900068794	6.15281362892571	-0.0194793130716336	0.950097207357985	0.988400419899929
Merged-chr5-92083837-4	chr5	92083334	92084334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080795)	promoter-TSS (NM_001080795)	-90.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	7.16001889450986	7.30271059631631	7.32078065201614	7.15497315413152	7.2860230887897	7.20603984713703	-0.0622683675820099	0.789704555843685	0.949297313310831
Merged-chr3-93520325-1	chr3	93519825	93520825	+	808.333313	f0_balb.idr	promoter-TSS (NM_016740)	promoter-TSS (NM_016740)	-171.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	2.26467643883934	2.55079975623633	2.44399764821673	2.113542647324	2.06197573821945	2.32634982170483	-1.92011198803729	0.0438172512243461	1
Merged-chr10-130542279-4	chr10	130541745	130542745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44866.0	NM_001103366	625131.0	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	4.72869538540835	4.59904459369801	4.32029847323613	4.63309341514373	4.55363066394153	4.24112866648662	-0.182162628124253	0.690295157736519	0.917799022980422
Merged-chr19-5847585-3	chr19	5847097	5848097	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2117.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	8.43550682159499	8.71429471170527	8.33533073674476	8.28955635153855	8.69210228234173	8.31683620561175	-0.0793411799886996	0.741961818807787	0.935046573868423
Merged-chr11-75160831-2	chr11	75160331	75161331	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 18 of 18)	intron (NM_001002764, intron 18 of 18)	7321.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.61773791509117	2.79257227189462	3.23685946765919	2.81932092939624	2.58017992527505	2.98496730577769	-0.490544235803054	0.538242668233516	0.855080856348593
Merged-chr4-141651501-4	chr4	141651006	141652006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	12609.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.63099252414205	6.58181935426234	6.40780480938589	6.18853058840871	6.46562002207175	6.13576421389384	-0.431961219530447	0.128506075341219	0.479537170053842
Merged-chr13-9872797-2	chr13	9872297	9873297	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107476.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	5.31187622688536	4.83373092058382	5.50851050398791	5.41190836162901	4.85825430136326	5.43500233664268	0.0269386071082488	0.949594844355634	0.988243921877722
Merged-chr12-85498853-2	chr12	85498357	85499357	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24967.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.74538540397853	4.98075601624347	5.49208022297782	5.21099097585089	4.43461312615302	4.6986474714016	-1.28005945024528	0.00656604073575102	0.0746015963339291
Merged-chr15-59831690-4	chr15	59831180	59832180	+	915.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-36721.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.68908075624397	5.45500041001336	5.11535186786285	5.29731590957145	5.21445064762377	5.31776599845011	-0.353671757037987	0.332855483387766	0.723927708416112
Merged-chr7-127449194-4	chr7	127448717	127449717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175163)	promoter-TSS (NM_175163)	-59.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	5.83076808522631	6.06185177279318	6.18397655099706	5.9053042775125	5.67738325433961	5.92131235368182	-0.344163085482515	0.2694738000065	0.666576488680077
Merged-chr1-45867184-1	chr1	45866684	45867684	+	733.0	f0_balb.idr	Intergenic	Intergenic	58410.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.96944036751733	7.01922872509195	7.17046236609796	7.05235572455289	7.19502876837944	7.18026024618533	0.142615511763623	0.552074124813306	0.861546661145201
Merged-chr11-117138449-6	chr11	117137988	117138988	+	864.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	23316.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.36205529036504	6.03840600370277	5.8504394714157	5.75008568968279	5.8243120559465	5.63912340460965	-0.639207332056431	0.0473833457900104	0.275694229089678
Merged-chr11-95870117-4	chr11	95869577	95870577	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 7 of 10)	B4A|SINE|B4	11260.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	4.08369348521857	4.05231571784239	4.04277118628174	4.54672047899238	4.43874648496258	3.8975330221504	0.747521646838239	0.14307304883957	0.50493371709051
Merged-chr7-88226159-6	chr7	88225660	88226660	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51925.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.30218095726728	6.54504055947536	6.46683223098835	6.74150783058821	6.94623166752698	6.80656539951393	0.628003947508828	0.0172765689734293	0.146484563932055
Merged-chr4-102753551-4	chr4	102753041	102754041	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6594.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.78244201366827	4.6798796178516	4.75261707658207	4.23251072986952	4.1779678956432	4.32613785710218	-1.26877485025949	0.00338060278565608	0.0459704521308826
Merged-chr18-23882317-4	chr18	23881816	23882816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-72372.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	7.38712832134288	7.36691449600346	7.37291650251384	7.15611572010742	7.52510722232372	7.3426942137845	-0.0295554935730156	0.902158566630926	0.977419695215246
Merged-chr15-75086400-4	chr15	75085894	75086894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25543.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	8.91254075775146	9.37103183107437	9.31756155986579	8.37953560587627	8.45544310619242	9.09467251602	-0.727389266063597	0.00880563115068193	0.0921717769934958
Merged-chr5-75874732-3	chr5	75874232	75875232	+	937.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103696.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	3.81033495164368	3.81452843425599	4.12352685176495	3.20017725016288	3.21897200705064	3.47161211205047	-2.3686949791901	0.000171836970425889	0.00442806151601034
Merged-chr15-66084083-3	chr15	66083580	66084580	+	745.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-107276.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	2.73120276827056	3.09688941801879	3.34568912398558	2.88443016062832	2.78541129204548	3.03932703710008	-0.800044068343995	0.284544072007715	0.682276040101953
Merged-chr2-124616031-13	chr2	124615307	124616307	+	836.211548	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	5511.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.99896208903459	6.03943872053646	6.03780546627848	6.01493048571292	5.97942271193834	6.00803421429698	-0.0436521522295331	0.878732908351092	0.972000507462599
Merged-chr11-83067354-4	chr11	83066855	83067855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	RLTR11A|LTR|ERVK	2243.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	7.03555590780692	6.64238884279881	7.00679784056714	6.95260436755381	7.09235394707002	6.98460841802556	0.170016514617116	0.51648959530392	0.844290327414415
Merged-chr18-61082316-3	chr18	61081809	61082809	+	598.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 22 of 22)	intron (NM_008809, intron 22 of 22)	-23263.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	2.56246264519445	2.49501154239359	2.60462376336153	2.87929852448276	2.87448924736647	2.80702918026369	1.72028614194346	0.024723420436593	0.185716924048752
Merged-chr9-40321654-4	chr9	40321177	40322177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357622)	promoter-TSS (NM_001357622)	-354.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	7.91221783181474	7.91848201745185	7.38229114668933	7.4147696555489	7.71655828508987	7.11281526489357	-0.462946661888692	0.106697438102635	0.435935318307798
Merged-chr14-77546737-4	chr14	77546236	77547236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-39868.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	5.47009520107927	5.37831639551146	5.54553460618862	5.19139130189534	5.34480784924515	5.46860488114655	-0.246986310004313	0.467446133199837	0.817990683108999
Merged-chr18-80313051-4	chr18	80312552	80313552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	51202.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	5.79815221406353	5.82382037592107	6.11122850556612	5.85096720774596	6.1490781827127	6.19159646453344	0.283646680305593	0.36122178686512	0.747169629644794
Merged-chr2-153741211-4	chr2	153740719	153741719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007896)	promoter-TSS (NM_007896)	-68.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	8.33514599503703	8.11358984134895	7.76737105886976	8.12625358080292	7.76587299263316	7.85718834520531	-0.248849981581444	0.332686240862399	0.723759614529559
Merged-chr16-31235067-2	chr16	31234567	31235567	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33829.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	7.30790855763382	6.75804601559956	6.82053416989165	7.64245085797182	7.34339284486648	7.26050621304711	0.649004765295879	0.0228429392240859	0.176445825245538
Merged-chr9-62877980-2	chr9	62877480	62878480	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15956.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	3.60472747948989	3.66987720300522	3.71478636874082	3.79860939563848	3.51774048143352	4.02217522546212	0.409827121384973	0.467151849003841	0.817799124670154
Merged-chr4-53264743-3	chr4	53264231	53265231	+	993.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	761.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	5.24425233651563	5.02048676823188	5.07960120981991	4.73348863618407	4.71511879489753	4.41637299082346	-1.06739058299833	0.00892916342446649	0.0930350400980476
Merged-chr16-4678711-2	chr16	4678211	4679211	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1009.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	7.87920674558732	8.10546629998818	7.82693570808391	8.17441415749147	8.55669123887142	7.9247854898011	0.434421346665736	0.0923887591058663	0.404902763493149
Merged-chr2-102189665-1	chr2	102189165	102190165	+	825.333313	f0_balb.idr	Intergenic	Intergenic	-3205.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.14297577704623	2.55874402434435	2.39420381146154	2.51345253718594	2.32352893384741	2.83810558324972	1.15100040026198	0.220221285957977	1
Merged-chr6-47836225-3	chr6	47835730	47836730	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173034, intron 1 of 4)	CpG	569.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	6.52141594330295	7.22545426709782	6.87792968092146	6.69359458953657	6.54332556834741	6.42224304944512	-0.549409361855425	0.0713879493896293	0.350548745518577
Merged-chr2-130907003-2	chr2	130906501	130907501	+	982.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015523)	promoter-TSS (NR_015523)	506.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	5.17103575920378	5.084666462535	5.12619026720854	4.8787895669672	4.57370921709945	4.53578302719604	-1.00874291453723	0.0112020920803737	0.108916064246755
Merged-chr4-86611119-2	chr4	86610619	86611619	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173400, intron 1 of 16)	B1_Mus1|SINE|Alu	936.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	2.92391825860096	3.11844038380029	3.02798097331448	2.98154396343547	2.88114468158127	2.98116405704801	-0.382143386650375	0.573177381318767	0.869962295500663
Merged-chr2-145884794-7	chr2	145884185	145885185	+	885.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-18556.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.47962343848445	5.79399022408361	5.58857284376082	5.43464407012844	5.66511483143599	5.56684367277462	-0.12711567867476	0.702259822732385	0.921841079228287
Merged-chr15-84254341-6	chr15	84253850	84254850	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	Tigger17c|DNA|TcMar-Tigger	22307.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	5.50378284153277	5.42815006192025	5.53301853505164	6.01715305236356	5.83963827141401	5.90911799961189	0.798247090720812	0.0103033412639283	0.102538024146507
Merged-chr5-35730044-4	chr5	35729546	35730546	+	923.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-770.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	5.69830565103967	5.99625106181613	5.68205974102156	5.81466497735515	5.94093016650132	5.84883988674395	0.113614163169957	0.717234483974952	0.926979087819795
Merged-chr2-27740366-4	chr2	27739873	27740873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29790.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.56496319588868	7.38658013472907	7.32709313000796	7.25152874144214	7.52536658897338	7.04607185563347	-0.19512873202664	0.447620713799764	0.806548958484392
Merged-chr7-109210005-4	chr7	109209487	109210487	+	812.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34780.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	4.92529752960706	4.9130644915128	5.03188305495729	4.92812969123983	4.62482350247773	4.958829711873	-0.264084846988918	0.50184436985271	0.836047011210757
Merged-chr8-10848292-4	chr8	10847807	10848807	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34147.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.63605864555047	4.37000978091348	4.23722111178148	3.84067295984098	3.71385468912237	3.90971298235179	-1.81593101479436	0.000355040068543011	0.00800384015804033
Merged-chr7-115040594-3	chr7	115040090	115041090	+	568.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89316.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.72829844967949	4.94660530567048	5.03894609255792	4.8063259973911	4.8685196530669	4.73953758575554	-0.210440257470339	0.593174054465729	0.878410931874355
Merged-chr6-128362051-2	chr6	128361551	128362551	+	569.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008021)	promoter-TSS (NM_008021)	771.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	5.08718855330579	5.25556234891699	5.22694761493108	4.70296843455534	4.72423082543455	4.49772202653602	-1.18242981623222	0.00277292177083818	0.0396373947273498
Merged-chr11-3914715-4	chr11	3914242	3915242	+	826.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153142)	promoter-TSS (NM_153142)	-78.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	4.02895614665188	4.25875255223106	4.86576660329343	4.021247920041	3.99668701712524	4.14038634606285	-1.00832743357368	0.0587701619014077	0.31372135433758
Merged-chr1-131091553-2	chr1	131091053	131092053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6290.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.3473834533587	5.26118863083978	5.45427572038693	5.34915501265068	5.36269140125164	5.20750002721115	-0.0714813453851179	0.83472559065276	0.96138272464184
Merged-chr7-27538789-2	chr7	27538289	27539289	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 9 of 13)	intron (NM_001317355, intron 9 of 13)	14429.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	3.19418842218349	2.82772932171125	3.21302235364174	3.22682841510202	3.1636632598954	3.22823128903018	0.50726584320193	0.4548109788162	0.810570423349433
Merged-chr1-132342391-2	chr1	132341891	132342891	+	766.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25557.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	7.44388622218129	7.70851473525753	7.4686564336354	7.70750872363773	7.88037075947657	7.45116959630491	0.218502072635587	0.375949457665612	0.758951282467405
Merged-chr10-79533838-4	chr10	79533360	79534360	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302442)	promoter-TSS (NM_001302442)	-73.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	3.92633630438035	3.74200984946877	3.76909065698781	3.5360105787785	3.59162474918832	3.78806437503657	-0.604335134805241	0.267930009895256	0.66509446052307
Merged-chr19-10525449-8	chr19	10524958	10525958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025333)	promoter-TSS (NM_025333)	214.0	NM_172302	269061.0	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	8.85006179253501	8.85708037635205	8.57431477848679	8.72638146215994	8.62258126093065	8.63953813965951	-0.149031643677723	0.473019544621536	0.820601745007875
Merged-chr9-44881438-4	chr9	44880933	44881933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-159.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	5.5279353753816	5.41193954863283	5.97039141239912	5.8661825361709	5.30737399042032	5.75636800841544	0.0189942821763211	0.959577695798683	0.990233913483689
Merged-chr2-166181134-6	chr2	166180603	166181603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25420.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	7.27928034678924	7.13766832523254	6.92123819017024	7.18412241775932	7.48298038935368	7.00852629579886	0.184360700883376	0.491427066195258	0.830520225936327
Merged-chr5-64326332-7	chr5	64325731	64326731	+	731.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	95874.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.75051175410332	5.29179065466731	5.22487440323502	4.45593251771457	4.29451109031025	4.54448346926603	-1.59176296697929	0.000271578027082841	0.00641973422656506
Merged-chr12-8936405-2	chr12	8935905	8936905	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 5 of 6)	B2_Mm1t|SINE|B2	-11524.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	2.55667912555202	2.59791445088607	2.90102237554724	2.75381283162226	2.64492452811748	3.08396944982758	0.753819664854729	0.332570590560359	0.723654123936882
Merged-chr11-68867889-2	chr11	68867389	68868389	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-14758.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	4.9243651220602	4.63706873784164	4.80885932252107	4.68226528877948	4.08211000711005	4.68621643822318	-0.691521091634282	0.141217148455692	0.502002992120524
Merged-chr7-120226648-4	chr7	120226137	120227137	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 9 of 30)	intron (NM_026458, intron 9 of 30)	22673.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	2.79535371075026	2.95742351692277	2.85682389797155	2.77334258578422	2.61751094305035	2.68033962352578	-0.983724948640276	0.183335791903466	0.566468792153865
Merged-chr3-83821982-3	chr3	83821484	83822484	+	935.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	19624.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	3.73607799201022	3.70490714455439	3.75456746427915	3.65966673851254	3.27139529562056	3.32499495306732	-1.08277415169913	0.0706461316524768	0.348409388095254
Merged-chr10-117897951-4	chr10	117897454	117898454	+	956.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27505.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.61805697702876	6.56055802181261	6.47284640941876	6.36017200636851	6.43656613909597	6.38286457307715	-0.259096780188689	0.324408918779657	0.717544999689449
Merged-chr18-38440023-4	chr18	38439519	38440519	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21112.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.59265892388536	4.77131662910147	4.77626470718664	5.02339452124797	4.77734462042354	5.02131166330664	0.507872596501774	0.20122777246484	0.5907963900799
Merged-chr12-99969163-2	chr12	99968663	99969663	+	687.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	4664.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.27122045131801	4.00901475974039	3.74882698870038	4.16241968211321	4.14510285212125	4.08808813231826	0.273598249273473	0.59693587891479	0.88011264230803
Merged-chr10-8825988-2	chr10	8825488	8826488	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	60082.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.31070694572173	2.41245738391006	2.53285807730012	2.35999346537662	2.21106580065576	2.54505823716728	-0.285334671360294	0.735842522817314	1
Merged-chr2-117314003-4	chr2	117313501	117314501	+	934.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	28876.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.1237653598484	4.02215141821234	4.3668308904658	4.3655127542817	3.9738369855725	4.62547127431085	0.449263266472538	0.379166294931904	0.761674249055766
Merged-chr13-88821030-2	chr13	88820530	88821530	+	975.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010103)	promoter-TSS (NM_010103)	-442.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	2.39308702479167	2.09480675693844	2.23565787920847	2.56243589669118	2.2451976535602	2.63789859013719	1.56161124435387	0.0920273477740937	1
Merged-chr10-95532417-4	chr10	95531892	95532892	+	951.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	17230.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	7.28856514537694	6.84627336821075	6.97873481626239	7.36771844066968	7.54389270005012	6.99433494654555	0.414313447130821	0.141085860585036	0.501841092894255
Merged-chr16-21908202-2	chr16	21907702	21908702	+	619.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 6 of 12)	Lx5c|LINE|L1	16233.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	5.32290039249956	5.51422154348567	4.86954350743094	4.69388889377763	5.22348310709816	5.08807286186357	-0.506950502644188	0.23186929413522	0.628047783269563
Merged-chr12-35054607-4	chr12	35054099	35055099	+	878.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	7410.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	7.47263306908329	7.43147042231702	6.65208611097556	7.63017394750535	7.68344008483767	7.19286677190973	0.406855889818085	0.200486253562826	0.589534586226654
Merged-chr10-59324015-2	chr10	59323515	59324515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	719.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	6.98120221691641	7.10912796578164	7.01904998817537	7.32776145782575	7.17329152958138	7.61718882807402	0.507225430139817	0.0456526306375804	0.269868150759576
Merged-chr17-8801124-5	chr17	8800626	8801626	+	859.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011866)	promoter-TSS (NM_011866)	-619.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.01969087801065	4.82043276123098	4.71542152401867	3.85628245583283	3.75853745355339	4.01627464934996	-2.80727312313296	1.92268472213317e-08	1.63414453890967e-06
Merged-chr17-46680974-4	chr17	46680466	46681466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027910)	promoter-TSS (NM_027910)	-20.0	NR_102392	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	6.56149158822744	6.48090751366318	6.64911605961177	6.71605471793072	6.7228439506979	6.57404491221405	0.186414093867131	0.470042163916845	0.819264793771069
Merged-chr9-22002768-4	chr9	22002284	22003284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	-150.0	NM_029939	77609.0	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	5.88493118832832	5.92657823297227	6.27534648547669	5.81024516800502	5.97783963407178	6.18133053226888	-0.0646816605006201	0.837556616346268	0.962141375366527
Merged-chr9-109985619-4	chr9	109985129	109986129	+	929.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 2 of 17)	intron (NM_001205332, intron 2 of 17)	53855.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	2.31927995565142	2.11988212029003	2.29057524693416	1.96427593253875	1.91925634993626	2.10271141751017	-2.1228885426996	0.0343667786564383	1
Merged-chr5-135568746-4	chr5	135568309	135569309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	4240.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	7.04483610500977	6.70171035802395	6.89058000991525	6.18030731794548	6.52389178282906	6.51079637054004	-0.74539360111347	0.00797787439154019	0.0859317763587412
Merged-chr16-35776693-6	chr16	35776199	35777199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	6313.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	7.2301529129177	7.27070305932884	7.23718201369981	6.79706683476792	6.84397116689759	6.80394366782663	-0.654245260557494	0.00562482147299914	0.0665950690275061
Merged-chr19-46047620-3	chr19	46047118	46048118	+	659.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2307.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	2.93506995533728	2.66987698469376	3.01540597323857	2.49802335127833	2.52641015457572	2.91809887124296	-1.18031835890929	0.146224985794884	0.510064920685029
Merged-chr2-166026091-3	chr2	166025564	166026564	+	666.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	33427.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.31563387583891	5.27304730988049	5.78594103943322	5.34302289377268	5.3835612291876	5.54820020872006	-0.0813451893241995	0.821833625309519	0.958023303204974
Merged-chr14-63108058-2	chr14	63107558	63108558	+	680.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14404.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	2.89055691233754	3.11259961029937	3.29076008242727	3.10690799922985	2.7376803226095	3.08524933850487	-0.542020221700525	0.453244786105251	0.809704192246081
Merged-chr5-102063272-4	chr5	102062759	102063759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	6662.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.79661975662422	6.59029978548184	6.74388357863057	6.91638398189817	7.02275927150617	6.60390053330035	0.249195238987344	0.353735534081703	0.740929143625235
Merged-chr1-132417802-1	chr1	132417302	132418302	+	841.0	f1_c57bl6.idr	exon (NM_172516, exon 1 of 13)	exon (NM_172516, exon 1 of 13)	349.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	6.04498733164304	6.1501706174511	5.94271923977006	6.20545944473762	5.87431449340002	6.11796163972707	0.0206516295805631	0.945184935608061	0.987875414328125
Merged-chr4-148075892-2	chr4	148075392	148076392	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12172.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	3.09111429826879	2.77995032340819	3.22166075283022	3.14203509351981	3.02593857747639	3.23791849315074	0.420542427796526	0.545858087470809	0.858385647048383
Merged-chr19-34254595-4	chr19	34254086	34255086	+	741.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 1 of 8)	intron (NM_007392, intron 1 of 8)	787.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	2.93157641785051	2.76399662643475	2.84554776813621	2.90562577058679	2.65589412995194	2.91867069487053	-0.108606402043366	0.880861094646891	0.972620786559158
Merged-chr2-165954429-2	chr2	165953928	165954928	+	708.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-38209.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.6996624733321	7.70943827871174	7.68197369549136	7.52257000211153	7.95272738970888	7.35087829761308	-0.0728712885886658	0.778271503594118	0.945439632982223
Merged-chr4-43041414-3	chr4	43040922	43041922	+	883.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	-1121.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	6.12696156029436	6.03662618592944	6.27321174252922	6.21419139999758	6.39828641387675	6.52899290702319	0.40424306436586	0.156722084425959	0.527613063058663
Merged-chr18-35119005-4	chr18	35118548	35119548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 1 of 17)	CpG	136.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	7.80354230925187	7.75003866695862	7.58207874748343	7.84246497339942	7.66547907968898	7.61931877478041	-0.00826477269816564	0.970828728281138	0.993568313863232
Merged-chr4-99715602-4	chr4	99715119	99716119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081264)	promoter-TSS (NM_001081264)	-11.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	5.65006409355232	5.7464668270397	5.54316548748819	5.80196900366609	5.61321432247925	5.63449639271378	0.0547415403492391	0.86332556598901	0.96822816879546
Merged-chr16-92822645-2	chr16	92822145	92823145	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	3429.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.89213870587546	4.69909113992538	4.69338985855997	4.66110416985774	4.60961220939238	4.59570681896997	-0.342030670551327	0.398575354247236	0.775273667788888
Merged-chr15-96460240-4	chr15	96459770	96460770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028148, intron 1 of 14)	CpG	573.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	8.15960320699952	8.09097240846484	7.76158569888321	8.18041819532867	7.67824631248536	7.85230700540826	-0.142315595050605	0.577830788948319	0.87219514592351
Merged-chr2-129617363-2	chr2	129616957	129617957	+	738.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 5 of 8)	MIR3|SINE|MIR	21995.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.29063012924616	3.47969252359121	3.66720558311009	3.63368108200076	3.62349371528421	3.83378089122653	0.759179121977626	0.190930824003489	0.577487433640144
Merged-chr9-90254368-2	chr9	90253868	90254868	+	896.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	B4|SINE|B4	16401.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.21590622135733	6.11910532313682	6.16001894786425	6.19064807694999	6.47703018476094	6.26213293894516	0.263671985408005	0.35195271705	0.739586550312439
Merged-chr11-70473417-2	chr11	70472917	70473917	+	979.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13433.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	4.68157228301349	4.7897411250562	4.63833843268187	4.61954288909571	4.69271631941708	4.58009297674594	-0.171928129385398	0.671900776396166	0.910694246658612
Merged-chr19-6047623-2	chr19	6047123	6048123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164709, intron 1 of 15)	intron (NM_001164709, intron 1 of 15)	478.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	6.67221432692478	6.46842477072293	6.80771252905509	6.57352429934747	6.58686865965072	6.73273735952055	-0.0329246662324979	0.901861972741644	0.977365418427752
Merged-chr8-13153762-2	chr8	13153262	13154262	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	3.99641511733639	4.17019885142413	4.45389385876896	4.30673554012394	4.05035957005956	4.22625512975978	-0.0441288437714826	0.928206508969581	0.983802612059568
Merged-chr17-35080010-4	chr17	35079512	35080512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163192)	TTS (NM_001163192)	3070.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	5.15573045482172	5.05960736875182	4.86274341966611	4.92058968226952	4.82426816331304	5.00240345129177	-0.280164063480814	0.461589844108717	0.815057779610765
Merged-chr6-136464133-11	chr6	136463608	136464608	+	925.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	4.5SRNA|scRNA|scRNA	-48539.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	7.23010878105776	7.64027512437224	7.41206709825344	7.43699920916225	7.57482024860772	7.36036610582102	0.0351222493388912	0.887077619032627	0.973818520404627
Merged-chr4-9649035-2	chr4	9648536	9649536	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5319.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.33106227775723	5.32012783512002	5.75225827360569	5.74511585929734	5.77522333315009	5.7133940714281	0.520758527062471	0.120917498962527	0.46502713440244
Merged-chr18-37910415-2	chr18	37909915	37910915	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	25061.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	3.32210200186321	3.49548405601258	3.94215596955802	3.78378573435117	3.63459921405594	4.00974872823103	0.690589039255037	0.255111027137168	0.652103660175395
Merged-chr19-4282841-2	chr19	4282341	4283341	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026720, intron 1 of 14)	CpG	296.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	3.33449081694575	3.27512799690507	3.62061295592252	3.29058138379923	3.04262604545888	3.43718005252423	-0.606436038654952	0.347637514337448	0.735700597497696
Merged-chr17-34593148-2	chr17	34592648	34593648	+	838.9285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_017463, intron 1 of 8)	intron (NM_017463, intron 1 of 8)	677.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	4.90748182749933	4.6324453970346	4.74873407267247	4.80409436148902	4.60951627880502	4.61284668024185	-0.209498714969339	0.609046625518798	0.885053989692691
Merged-chr17-69382840-4	chr17	69382352	69383352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356283)	promoter-TSS (NM_001356283)	-323.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	6.45388355913153	6.37551713696702	6.46168598457548	6.65444700838044	6.07546320936574	6.39260383511564	-0.0620710903218389	0.835903576835623	0.961873866737315
Merged-chr9-110732797-4	chr9	110732266	110733266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083936, intron 1 of 13)	GC_rich|Low_complexity|Low_complexity	9844.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	5.50168351702961	5.45204611786297	5.19716670061794	5.28564412190158	5.53155800655372	5.2274421902355	-0.0646023348648538	0.855526696998452	0.966242264237245
Merged-chr6-129407102-1	chr6	129406602	129407602	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-1760.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	7.50301856590142	7.46181006703668	7.43283115840817	7.39855497937907	7.63191136105916	7.22829716829667	-0.0390593898598206	0.871209892693794	0.970222087171093
Merged-chr16-33745614-4	chr16	33745090	33746090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-48447.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	6.58215472853437	6.36006674375194	6.47773500450109	6.55357499161982	6.98350299954897	6.73879654749929	0.478732109390051	0.0853130899211307	0.386568778687067
Merged-chr2-181598419-2	chr2	181597919	181598919	+	603.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172676, intron 1 of 4)	intron (NM_172676, intron 1 of 4)	728.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	3.71734000318766	3.62161941555665	3.42878166987341	3.44676999813598	3.26754921425158	3.44377517350483	-0.80980216180715	0.172650328364782	0.551230561617291
Merged-chr16-58504909-2	chr16	58504409	58505409	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	18517.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	3.76421109539483	3.9155071026206	4.22794581707459	4.15582888331458	4.27480961881348	4.29501772734274	0.777759794897998	0.120305004794687	0.463771641846234
Merged-chr16-23376333-4	chr16	23375828	23376828	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52805.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	5.57815219803006	5.55309876788316	5.64050233459704	5.75875608463902	5.70262849790451	5.59214051619207	0.19078696349551	0.543800449739413	0.857551302506722
Merged-chr17-27623545-4	chr17	27623053	27624053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-101.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	7.46790588682512	7.5578616368175	7.60103091975939	7.46877880787327	7.28834723911139	7.05172327056914	-0.374071100037757	0.123878418773763	0.471070188601109
Merged-chr17-72919449-7	chr17	72918918	72919918	+	851.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 1 of 2)	CpG	1113.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	6.47520348840682	6.65133552389969	6.67986263451698	6.29505375948346	6.50641025691234	6.39482024737742	-0.315912665391055	0.2413815625472	0.638385260200477
Merged-chr7-29228366-4	chr7	29227865	29228865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	4157.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	6.52260347106547	6.26388957896501	6.72528909780497	6.69092967265937	6.78838683342923	6.9259580096916	0.466177772585376	0.0930903387020791	0.406440169611975
Merged-chr12-84178612-2	chr12	84178112	84179112	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	15403.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.58443902458838	3.913711364195	4.58765627632477	4.74896198218952	4.58081156225938	4.3544349245927	0.436399906000613	0.392186599268125	0.770943461123581
Merged-chr7-16099771-7	chr7	16099334	16100334	+	808.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	1254.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	6.41299110981614	6.55957289347146	6.45651217207062	6.65045099314077	6.51826855892149	6.51595597750815	0.134742048403567	0.608002703314856	0.884838153491064
Merged-chr4-34295863-2	chr4	34295363	34296363	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-245796.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	2.80552474882797	2.82911994215533	2.97780092043733	3.01677750811226	2.80377513997286	3.10711842274588	0.516131452486436	0.462017952154938	0.815107818354545
Merged-chr1-97714898-4	chr1	97714403	97715403	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	-52885.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.85813054329764	4.41660788250482	4.59145133758919	4.61388079428779	4.51641617891837	4.94910202985812	0.140770320803159	0.752309755192553	0.938157651950668
Merged-chr3-83900152-2	chr3	83899652	83900652	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 33 of 34)	intron (NM_172681, intron 33 of 34)	-58544.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	1.94841318760533	1.98925141445812	2.27664357412999	1.82509072359295	1.78253229231029	1.96377416735701	-1.93446508418959	0.0638225905400487	1
Merged-chr10-95563702-4	chr10	95563199	95564199	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027722, exon 1 of 5)	exon (NM_027722, exon 1 of 5)	447.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	7.11021444228041	6.89656003532965	7.03695820249278	7.17270533519327	6.59573024088307	6.97528411689864	-0.130008262697076	0.641829074880721	0.899185319190393
Merged-chr11-48855001-2	chr11	48854501	48855501	+	835.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	16419.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	4.1812218082689	4.39947341131622	4.42563440435113	4.44799875790981	4.2046251522808	4.36441058111983	0.00428487292543457	0.99249978361419	0.998523796268552
Merged-chr16-97461487-4	chr16	97460984	97461984	+	778.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010846, intron 1 of 10)	intron (NM_010846, intron 1 of 10)	1421.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	4.09242333148483	3.79665388753976	4.31759197084776	4.16206937343559	4.20499559495749	4.11967897035826	0.251830664590718	0.617377886262258	0.888810836054056
Merged-chr12-113154597-2	chr12	113154081	113155081	+	739.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007763)	TTS (NM_007763)	-1840.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	5.247901166671	4.97237037579637	5.09976574338009	4.97440545068078	4.84533423263055	5.28947631794728	-0.159918686572336	0.679888617157583	0.914056754309378
Merged-chr8-41039669-4	chr8	41039154	41040154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	2277.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.54301483017982	5.27190364795743	5.54898357001702	6.13654594300957	6.42029167048477	5.88493977083662	1.29340580660541	0.000100526639853321	0.0028470458301277
Merged-chr2-132229943-5	chr2	132229513	132230513	+	722.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17775.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	4.24978551389352	4.2292511610223	4.39921149204851	4.36756865826563	4.25007796317073	4.29267903375091	0.0377895147751871	0.933101320676764	0.985356091252617
Merged-chr14-70775452-2	chr14	70774952	70775952	+	671.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	1071.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	5.51777803142589	5.91220266622238	5.90110032353059	5.84586702761263	5.98334713220623	6.03000557934959	0.297773402361225	0.350540698988321	0.738574660220304
Merged-chr13-21170487-2	chr13	21169987	21170987	+	642.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9444.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.23365547189084	4.1476746037567	4.1088209634748	3.92928309510665	3.81870663161811	4.54752131434369	-0.100234563525713	0.852357873819945	0.965378390789581
Merged-chr1-151511170-3	chr1	151510678	151511678	+	647.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_001360847	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	5.32355569944763	5.33048658674007	5.47711005792331	5.39640333129648	5.51690614746742	5.5111941562593	0.202091677510765	0.542733613750689	0.857318248006765
Merged-chr13-115150889-6	chr13	115150410	115151410	+	804.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48946.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	3.91609262977194	4.13302820221428	4.00914062922489	4.01431500810657	3.78165402614552	4.0777157211894	-0.205904550136383	0.684964312320917	0.916060088072373
Merged-chr3-94811439-2	chr3	94810939	94811939	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-24924.0	NM_001037711	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	3.27197554017696	3.39672587084553	2.92595845767415	3.03697589096586	2.98936483170404	3.41306956355325	-0.249373058144676	0.727714082218963	0.930204882969987
Merged-chr7-101551713-4	chr7	101551201	101552201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033804)	TTS (NR_033804)	4101.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	8.29445174531549	8.16540578500211	8.08816131635824	8.1626274490675	8.58049529050229	7.91373412190726	0.100450006941313	0.695831807264061	0.919291538728398
Merged-chr4-99211837-4	chr4	99211337	99212337	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	17690.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.32772066086707	5.12958085466919	5.17948526048908	5.6490791661548	5.90767809980627	5.61721502519614	1.00096335721384	0.00319835334248892	0.0442441537692133
Merged-chr16-91415743-7	chr16	91415233	91416233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	9498.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.16776119597534	8.12599190025317	7.69615516496995	7.85905360008072	8.23209486767902	7.76179533850838	-0.064228530203685	0.806113059306224	0.954102910475772
Merged-chr2-167420833-4	chr2	167420348	167421348	+	767.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-862.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	8.12733759975257	7.97578529814282	7.73070383222215	7.94614224978139	7.91256828809943	7.61706199808674	-0.173290949464164	0.4718067907127	0.820338591808607
Merged-chr7-48997721-2	chr7	48997221	48998221	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	38648.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.21138519523582	5.20295423552202	5.11993669318659	5.19474049784458	4.98275690797602	4.93152454394578	-0.28925157692501	0.427964846654584	0.79478410196054
Merged-chr2-129370369-7	chr2	129369895	129370895	+	953.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008361, intron 1 of 6)	intron (NM_008361, intron 1 of 6)	493.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	5.75254487364015	5.35725809755221	6.1363402626198	5.97620612125068	5.73089957627858	5.98894758288224	0.219832324896013	0.542032161967126	0.857034750433211
Merged-chr19-9895160-2	chr19	9894660	9895660	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 2 of 17)	intron (NM_016692, intron 2 of 17)	4373.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	3.75238445400106	3.39083460479901	3.57409488838453	3.63010521059403	3.32254790491646	3.53671401092535	-0.298115950592045	0.617683425523446	0.888884704016792
Merged-chr12-105981576-3	chr12	105981083	105982083	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-28680.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	2.0808587059947	1.93488443628977	2.18072878503812	2.43859307626037	2.27232633983413	2.39009864897196	2.38387334340784	0.0167012037994051	1
Merged-chr5-129670126-4	chr5	129669639	129670639	+	817.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172462)	promoter-TSS (NM_172462)	-51.0	NM_172462	22648.0	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	3.6674787489429	3.59609709437673	3.73135590246434	3.44544462987756	3.21924305973117	3.59845380774	-0.894562133061295	0.131480942708189	0.48479293843552
Merged-chr2-155299666-3	chr2	155299150	155300150	+	941.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 8 of 11)	intron (NM_001004721, intron 8 of 11)	23286.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	5.56860233740119	5.42538546499294	5.83359345083262	4.60998114452322	4.84150206912023	5.11458646983534	-1.53549038011681	8.36913689947964e-05	0.0024434355899365
Merged-chr1-165643209-4	chr1	165642700	165643700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8659.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.93471346557017	7.84437470668137	7.73545181765606	7.64330159515629	7.99464224187811	7.59632208725024	-0.110913214488176	0.643573562906181	0.899886889532458
Merged-chr7-44836536-3	chr7	44836049	44837049	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010215, intron 2 of 7)	intron (NM_010215, intron 2 of 7)	261.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	5.83666897564075	5.54607422905983	5.92492156630692	5.87750585263804	5.87632474017499	6.13616741780585	0.338248565997105	0.288863894073452	0.686246592378696
Merged-chr1-43868517-3	chr1	43868046	43869046	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40838.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	3.27133839462893	3.31482294335677	3.12008873742853	3.09622147994664	3.26152869916459	3.41936234536735	0.0795230242615829	0.900962608272273	0.977039928959315
Merged-chr10-128498104-2	chr10	128497604	128498604	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172259, intron 1 of 6)	intron (NM_172259, intron 1 of 6)	581.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	3.74434328082266	3.85220561884639	4.01296394376472	3.9058934952345	3.88383168689533	4.16784080420511	0.36131034124429	0.484064831634899	0.82665199605554
Merged-chr1-64534108-4	chr1	64533611	64534611	+	849.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	1307.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	7.02189373568454	7.33876900667921	7.11702171203011	7.49198537998637	7.72905665551353	7.49419552413588	0.607657403430559	0.0133556057688536	0.122903477639324
Merged-chr8-76900473-7	chr8	76900016	76901016	+	905.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028579, exon 1 of 2)	non-coding (NR_028579, exon 1 of 2)	105.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	5.22971227052516	5.53057107567717	4.8677065945736	5.31691284269012	4.89420213759196	4.85297090244103	-0.426522995913238	0.310431661667254	0.705829393476587
Merged-chr2-22744897-4	chr2	22744407	22745407	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29420.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.99692606616692	6.98051830632763	7.24405386889405	7.17975059474672	7.1894811811902	7.08409525207713	0.125801345107974	0.604217634564725	0.883006497301608
Merged-chr3-116483885-3	chr3	116483391	116484391	+	752.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24284.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	4.28110936217823	4.54848778062732	4.510680961326	4.68533890668213	4.61525123566364	4.94896945306466	0.718971084145853	0.0961326923764	0.413406846206806
Merged-chr7-111082402-5	chr7	111081926	111082926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 1 of 21)	CpG	604.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	8.38395206886417	8.34725716214826	8.23284406724297	8.13633312048401	7.98950868569061	8.24442213986544	-0.284610477094753	0.180641896629469	0.56265140611016
Merged-chr12-55473616-2	chr12	55473116	55474116	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19031.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	6.90897669793998	6.81008211492137	6.77056391233056	6.70404481003443	6.7707427400288	6.6526157174868	-0.187216399281034	0.453738929690789	0.809979841654596
Merged-chr3-96276635-2	chr3	96276135	96277135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6935.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	2.10889628285385	2.38476275902443	2.32187902066665	1.99134166667907	1.90792628281981	2.20256453258644	-1.95575730610946	0.0544175912652875	1
Merged-chr2-120609393-4	chr2	120608913	120609913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025475)	promoter-TSS (NM_025475)	31.0	NM_025475	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	8.423424147324	8.48521939914471	8.27166469749341	7.91647445446204	8.18765987720816	7.61002146028259	-0.649327044876812	0.00867723157985501	0.0912687362999246
Merged-chr17-28329383-3	chr17	28328868	28329868	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 3 of 5)	intron (NM_001357628, intron 3 of 5)	803.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	6.38830459724218	6.62105419697128	6.33933331152881	6.27851635971662	6.23510493987781	6.10307471146405	-0.411083814799823	0.143340463411138	0.505400107113741
Merged-chr14-55586534-2	chr14	55586034	55587034	+	845.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011190)	TTS (NM_011190)	-1280.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	4.26428762670828	4.26781021377968	4.29129371580947	4.34180166276684	4.54422753089191	4.68553772839485	0.653001387873042	0.141567996470343	0.502257195591213
Merged-chr12-79725864-3	chr12	79725394	79726394	+	764.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	198839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.73990742422378	4.61017443709885	4.33329352298014	4.48320613026328	4.57833993249336	4.44883772368927	-0.179630826783912	0.681550119177303	0.914728491967434
Merged-chr15-79670810-4	chr15	79670308	79671308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-60.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	6.03768857962156	6.09269950287495	5.97254696923402	6.20542815185389	5.66491673343915	5.8375472745688	-0.203534391133596	0.52685625186296	0.849687525994762
Merged-chr16-5055208-2	chr16	5054708	5055708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356320, exon 2 of 17)	exon (NM_001356320, exon 2 of 17)	5151.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	3.13969198259368	3.08226190289854	3.06770286695347	3.17982060125078	2.77580843242231	2.95741271649084	-0.537771991799264	0.442538400478723	0.803268256673243
Merged-chr6-135240582-4	chr6	135240091	135241091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080552, intron 4 of 5)	intron (NM_001080552, intron 4 of 5)	7293.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	5.62463730211837	5.56809385774124	5.44859929369335	5.40364290694616	5.39177275573735	5.45195431530057	-0.270826147306369	0.407431326134354	0.781591833659651
Merged-chr5-105053755-5	chr5	105053314	105054314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029509)	promoter-TSS (NM_029509)	-253.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	6.65756256082324	6.48028945119884	6.23582939618855	6.58626629221762	6.85913296733909	6.88502419651674	0.480361307430536	0.0882970330805282	0.39441942997915
Merged-chr6-99241825-4	chr6	99241331	99242331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24684.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.51482481343279	6.37934228658065	6.4601573365945	6.867574823347	6.85613244041164	6.09230507960006	0.341849057402792	0.285968648738232	0.6834270420832
Merged-chr6-87553801-3	chr6	87553330	87554330	+	679.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20571.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.43041689241001	3.28852517124289	3.49230248194588	3.68530842117162	3.27379370339175	3.39685280788719	0.223568930997442	0.714740157640138	0.926044950792719
Merged-chr15-74672650-4	chr15	74672158	74673158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-88.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	5.44125083811003	5.44555820779957	5.7425933107587	5.2817307499608	5.33472957522288	5.43346463817485	-0.372584210223193	0.273766209838181	0.671170854101807
Merged-chr17-71196839-3	chr17	71196325	71197325	+	851.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-7829.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.23128329744575	4.1288435797213	4.24615527154792	4.18370160651689	4.36966198888447	4.02523515663046	0.0317447584507154	0.946927447199259	0.988007649185823
Merged-chr11-21044531-2	chr11	21044031	21045031	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-46793.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.16737023068035	2.93073362192508	3.66122592332212	3.07895384480088	3.22533855982752	3.29652394915432	-0.346830727616076	0.628083741066448	0.893508518159715
Merged-chr8-25087743-4	chr8	25087239	25088239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	MIR3|SINE|MIR	14072.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.93653027801386	5.46859070996464	5.83207468027436	5.66969959648528	5.68327349857103	6.0286816104217	0.0667387827216341	0.844846674432987	0.963760118842549
Merged-chr7-142457787-2	chr7	142457296	142458296	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3016.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	3.040491923231	3.00030257675057	3.13027459556173	3.7898740858138	3.48302636898	3.65935564570161	2.50029061856547	0.000168056782869175	0.00435078379031925
Merged-chr17-80206825-4	chr17	80206316	80207316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360435, intron 1 of 6)	CpG	489.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	7.74692861036306	7.7367973147053	7.73530660287048	7.54514669944432	7.5482011068786	7.80020256313603	-0.157867348558014	0.480216448645604	0.824537487093219
Merged-chr2-45112208-4	chr2	45111707	45112707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-53.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	7.68021480837671	7.54174540504209	7.54104977742825	7.77270857641594	8.0131887766289	7.68395462095949	0.35624291176779	0.122829606573716	0.468911997787931
Merged-chr7-80849934-4	chr7	80849412	80850412	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12196.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	2.80300122057747	2.54376353790136	2.76956805093425	2.73187289745481	2.61554563329546	2.59014801091121	-0.333038312899122	0.662931960380955	1
Merged-chr3-105722999-3	chr3	105722509	105723509	+	911.5714109999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	5.02465645554977	4.72992976653903	5.05566248447253	4.87753774919811	4.8858872197399	5.05291671715571	-0.00701382923200644	0.98562676037057	0.99691465847822
Merged-chr7-74974676-4	chr7	74974164	74975164	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55547.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	2.59817136779181	2.9219946251395	2.86129029471314	2.78661910426139	2.80511201433268	3.16065690145015	0.596083482726817	0.429476431522246	0.795784671795164
Merged-chr9-65537306-2	chr9	65536806	65537806	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42781.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.41895631104548	6.10230029618653	6.50751958362828	6.52577178951797	6.42480799241147	6.11224164389815	0.0436432925528341	0.884516583674389	0.973510728214101
Merged-chr18-58567289-4	chr18	58566788	58567788	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11048.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	6.49386770501767	6.9243316245914	6.41674368946921	5.90888259425952	6.26430144634369	6.0135940698051	-0.941675495616745	0.00286840513435703	0.0406530837028752
Merged-chr14-66931773-3	chr14	66931257	66932257	+	925.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20549.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	4.07834010611934	4.35295145583758	4.12963305612306	4.6273255386099	4.60929760722643	4.47894225192883	0.977891511151902	0.0311922748201443	0.213923982995459
Merged-chr13-69526470-5	chr13	69525922	69526922	+	957.23999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	7442.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	6.18640278420307	6.10756868127466	6.31988020766537	5.8330433367852	5.57075011084069	5.43958803272601	-1.00834457751594	0.00141941819228408	0.0237262349805425
Merged-chr3-122246613-2	chr3	122246113	122247113	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008129, intron 1 of 6)	ID_B1|SINE|B4	1056.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	5.4611241875815	5.64477620860257	5.80198429122644	5.15265595283352	5.54973043187498	5.50149364642041	-0.417692870196769	0.234314752704119	0.630452522567377
Merged-chr15-79030823-4	chr15	79030343	79031343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161712)	promoter-TSS (NM_001161712)	-31.0	NM_013847	26912.0	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	3.68597053468147	3.63295943921675	3.41696339023321	3.43559841499424	3.17588561022845	3.48905308877555	-0.836716263400546	0.169870956791798	0.547029299171809
Merged-chr11-69931162-4	chr11	69930650	69931650	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4749.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	4.56037413530425	4.64653486188747	4.85257608941423	4.36631817543635	4.76274078162889	4.73593616501063	-0.114460543544731	0.791113969269706	0.949694766870106
Merged-chr13-103900192-4	chr13	103899698	103900698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	B4A|SINE|B4	20388.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	4.73901244083525	4.84994951895621	4.51773937069444	4.59701979578986	4.85603325870479	4.4959733874074	-0.109738665363201	0.798446832017433	0.951930937621884
Merged-chr5-105582479-4	chr5	105581978	105582978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	63007.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.63184622548893	7.59155272963222	7.44373608028192	7.38917190174564	7.59256779455387	7.2009110445685	-0.21621014097457	0.372303853596399	0.75613031608614
Merged-chr8-26978409-1	chr8	26977909	26978909	+	1000.0	f0_balb.idr	intron (NM_001110508, intron 2 of 2)	CpG-13923	1073.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	7.12202275952382	7.3522359440558	7.52507326156624	7.32313118754053	7.4012754784868	7.65469703220531	0.183871294965064	0.46682681958837	0.817656036143015
Merged-chr2-90562252-2	chr2	90561746	90562746	+	650.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	18401.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.76444878425072	5.91058422877944	6.01591213688779	6.02935335038797	6.28451622600169	6.07659161067762	0.431404344724454	0.149589739096486	0.516047388504994
Merged-chr1-127136344-2	chr1	127135844	127136844	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68642.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.84948708659784	4.38981278207463	4.98520969272111	4.02617048386896	4.33657302042286	4.71115151480944	-0.921942917811099	0.0673551582565278	0.339377982815137
Merged-chr11-99449837-4	chr11	99449359	99450359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11706.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	6.86957112232663	7.00065058853059	6.78529922473587	6.94640440065886	7.01942654389006	6.69853955840293	0.0175395795105926	0.945695669593494	0.98796006280508
Merged-chr5-9162422-3	chr5	9161935	9162935	+	863.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	-659.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	6.06786944756802	6.00222754260527	6.03995233185143	6.0794710216089	6.12939590182522	6.07836732826326	0.105438556620779	0.709662735257531	0.92401439884764
Merged-chr11-8702007-4	chr11	8701537	8702537	+	966.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37502.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.86041639843546	3.97383138775512	3.97878684933701	4.36503389159532	4.45658018779559	4.33281808710892	1.27887260624456	0.00683806665474631	0.0768122361264786
Merged-chr11-59551824-2	chr11	59551324	59552324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 5 of 10)	exon (NM_145827, exon 5 of 10)	9138.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	3.52518749240738	3.1876140469445	3.75005652165679	3.78959860089712	3.36099286412674	3.7707901343538	0.518351502090492	0.41492481660697	0.786115461363139
Merged-chr10-39440354-4	chr10	39439869	39440869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	70570.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.34665371294318	3.95634763794621	4.19181239377427	4.15250127480566	4.34698429064579	4.51435996571155	0.450130965212731	0.353278525093826	0.740611209493515
Merged-chr16-45159921-2	chr16	45159421	45160421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356366, intron 1 of 10)	intron (NM_001356366, intron 1 of 10)	1092.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	5.5662223541572	6.00484161347096	5.48432411994322	5.53081014208272	5.90094726898	5.5175821693965	-0.0787496878428815	0.827006354780536	0.959327832716382
Merged-chr4-155839652-3	chr4	155839151	155840151	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024263)	promoter-TSS (NM_024263)	-29.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	5.04667003819197	5.24363387290043	4.98838479238542	3.66915338115363	3.6075950160328	3.98457011226145	-4.15021735649154	1.64011816311845e-12	3.0192688521407e-10
Merged-chr7-135650250-4	chr7	135649718	135650718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015548, intron 2 of 2)	intron (NR_015548, intron 2 of 2)	-1681.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	4.66279077712425	4.47981179362512	4.7464805196622	4.18827071087887	4.44989511201708	4.70157261838755	-0.42649079513096	0.344454282545022	0.73309765066036
Merged-chr14-63104219-4	chr14	63103700	63104700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18262.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.60055907074489	8.71890459152749	8.34009454278597	8.39356476548245	8.78039495880174	8.28842625600385	-0.0755843108364665	0.757821062507273	0.939957028913442
Merged-chr6-59011876-4	chr6	59011395	59012395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	12607.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	5.30512857142618	5.38147044830763	5.27531284194911	4.80513160792099	5.03228105407658	5.48246424019436	-0.401968174247709	0.30331803828632	0.699902971652469
Merged-chr3-55122606-4	chr3	55122090	55123090	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144988, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	10424.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	3.90415848747034	4.05313936487194	3.893042952083	3.81243991603806	3.84442469198446	3.86116331348588	-0.363692350039911	0.474193981357337	0.821299449548079
Merged-chr13-34051813-4	chr13	34051269	34052269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	14128.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	6.23262004331797	6.51887108458327	6.15398197128886	5.92733518354445	6.080680166779	5.85908940308422	-0.596332306769761	0.0475863571331319	0.276332305417939
Merged-chr11-97364113-2	chr11	97363613	97364613	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	1562.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	5.05091269532367	5.00762472682215	4.45522217295052	4.79998780952759	4.99886790126035	4.47728155521873	-0.195406091201682	0.671275535696821	0.910425172764275
Merged-chr1-134092348-2	chr1	134091848	134092848	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13193.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	5.08381431890828	4.8720548520434	4.94875056226234	5.16639044759033	5.12890164735161	5.11985481925532	0.352663772531316	0.335772321678161	0.725879995869482
Merged-chr17-47743528-1	chr17	47743028	47744028	+	639.0	f0_balb.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	5597.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.53981164917507	3.56307936361852	3.59819916129823	3.2813713049216	3.27924953482594	3.34231144936283	-1.03175286086011	0.0809253445709402	0.376427975709774
Merged-chr11-118156309-2	chr11	118155809	118156809	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27090.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.5175222662419	6.42223657887045	6.1412212161998	5.84840536416042	5.79767636438005	5.8721024157039	-0.927124742112762	0.00166015657080456	0.0267606175791372
Merged-chr2-164943077-4	chr2	164942583	164943583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5136.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	4.940568712671	4.47819623815977	4.48912442735734	5.11646017385066	4.91224720688373	4.73360996338667	0.611605498078435	0.160538926088071	0.533208683746259
Merged-chr8-84417979-1	chr8	84417479	84418479	+	679.0	f0_balb.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	2615.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.57174221731934	2.4908922422579	2.66320155376146	2.09699695712137	2.10112712008871	2.15264294111704	-4.20411659726465	0.00057138055320724	1
Merged-chr17-5814048-4	chr17	5813547	5814547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14557.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.94254759812836	6.04384770461364	5.79358524085164	5.37752849645037	5.79391735490491	5.49129500315985	-0.644805337512726	0.0532243545828967	0.295751195809548
Merged-chr2-50786605-4	chr2	50786106	50787106	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-123078.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.19671082662412	3.44850403291328	3.46984699862828	3.34083135530042	3.45314163653822	3.4867907399052	0.201787857731881	0.7378265553193	0.933858424870961
Merged-chr1-131957922-3	chr1	131957413	131958413	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5002.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.11084931163638	3.90011076558934	4.40798512838326	3.7431192685557	3.85026096670093	3.80403256673702	-1.0433769734905	0.0499639497059974	0.284558543951857
Merged-chr11-87448895-4	chr11	87448382	87449382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	21291.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.67021828225982	6.38790568985427	5.98314876959875	6.39101814584961	6.50379502730341	5.91443265119221	-0.134960322497348	0.692977806214119	0.918812458246728
Merged-chr1-88280260-2	chr1	88279760	88280760	+	793.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2681.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.59454426374654	4.08953782491845	3.81654224133953	3.81111255945902	3.69734826461567	3.72993871937209	-0.347373445165259	0.531936348481295	0.851867550687707
Merged-chr15-79927839-4	chr15	79927346	79928346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144811, intron 2 of 6)	CpG	4800.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	6.72608040397776	7.05305784042675	6.68644622573277	6.73252879595709	6.99236745516638	6.57247153757237	-0.0787112066238629	0.779856501684605	0.945949149660645
Merged-chr10-40138187-4	chr10	40137740	40138740	+	819.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4014.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.0917593015322	6.19977662678553	6.0220081737004	6.25840679175312	6.17169185829133	6.01265933953948	0.0770069463962957	0.789001078373816	0.949092571737679
Merged-chr12-100421937-5	chr12	100421440	100422440	+	927.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98882.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.79093729817261	5.92358895927415	5.71832934672924	5.35164174267428	5.44935500720437	5.59202987519646	-0.663109010948189	0.0389422517496618	0.244736169455125
Merged-chr8-36820738-3	chr8	36820267	36821267	+	658.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-87713.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.34236166182053	3.54774854005539	3.28206280341793	3.02540625955045	2.76516224009824	2.99187031881728	-2.25267747690658	0.00190110994346761	0.0297177449137803
Merged-chr15-64000172-1	chr15	63999672	64000672	+	589.0	f0_balb.idr	intron (NM_144846, intron 1 of 11)	MIR|SINE|MIR	-2106.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.54461731227328	3.45492825939359	3.84802458289796	3.70292006424127	3.38369229443241	3.86971820901901	0.138714400085609	0.816285337724348	0.956616423430214
Merged-chr12-17266498-4	chr12	17266027	17267027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027959)	promoter-TSS (NM_027959)	-68.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	6.59732196702826	6.98268543160501	6.65807187651482	6.61108607823238	6.29443148143884	6.45556375490248	-0.487558461727086	0.0853860428074488	0.386819120309467
Merged-chr2-157447327-3	chr2	157446835	157447835	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 2 of 13)	L1M4|LINE|L1	23042.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.55652628662561	4.96180660477267	4.62962509092694	4.32581310841567	4.249867868721	4.61199370871448	-1.66689403674677	0.000521897497407308	0.0108294381457026
Merged-chr17-26462405-2	chr17	26461905	26462905	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	46067.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.60587832458611	2.61084934570271	3.11429589357982	2.75506768003359	2.85189922394134	2.96505712395646	0.318736056748235	0.680957952383377	0.914522966124234
Merged-chr6-82777066-4	chr6	82776568	82777568	+	846.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2614.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.25917654408004	2.93703234706696	3.0109486696138	3.3396761905165	3.28511142602778	3.32357713959137	0.991705814683872	0.134165984810626	0.489785603655621
Merged-chr3-90472424-4	chr3	90471923	90472923	+	862.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-3778.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	3.20524925808181	3.25014226622971	3.48507190851866	3.43434021015218	3.4252685510679	3.70517445173682	0.800350283904561	0.18798807979358	0.573416108077913
Merged-chr4-128707616-4	chr4	128707121	128708121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	18883.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.30557087141165	4.84690321975635	5.51859584038903	4.77720905610302	5.07780147914595	5.11668361585071	-0.510821264214236	0.217089792613555	0.610772864371554
Merged-chr18-24121728-7	chr18	24121215	24122215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172625, exon 1 of 5)	exon (NM_172625, exon 1 of 5)	104.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	7.42215644361592	7.79075526957438	7.50042582281587	7.64214605354778	7.7917442183375	7.17524496262069	-0.0168987781541855	0.950762913594808	0.988497463870961
Merged-chr17-37492157-4	chr17	37491661	37492661	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146328)	promoter-TSS (NM_146328)	-307.0	NM_146328	258325.0	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	3.91499021403821	3.94598318203314	4.14880739112554	3.59638383892821	3.84997734831841	3.79236358509529	-0.776436283562235	0.144015628750852	0.506627169369674
Merged-chr8-82874359-4	chr8	82873847	82874847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	10991.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	4.36862978194335	4.40400755250266	4.72134992347821	4.49235155668459	4.58788423671828	4.4274113514085	0.0333116460881993	0.93950129287694	0.986720663284284
Merged-chr3-126629310-2	chr3	126628819	126629819	+	756.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32368.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	8.06137774197082	8.34575306199561	7.72066501757828	7.91567025849295	8.09656862672805	7.48310940898607	-0.296886474284629	0.293463690741135	0.690276375383417
Merged-chr7-43464957-2	chr7	43464457	43465457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290316, exon 3 of 10)	exon (NM_001290316, exon 3 of 10)	1724.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	4.8698148176384	4.7007627724849	5.31268624961169	5.15729556058855	4.61700265494102	4.85896134267634	-0.178640739419919	0.685173845101806	0.916178332956724
Merged-chr16-33836808-4	chr16	33836307	33837307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7142.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.20868061860625	5.70522086044222	5.37911195971884	5.23933408429641	5.19401146757078	5.71277017857601	-0.118078173052543	0.758893447790933	0.940311236380535
Merged-chr6-32184741-4	chr6	32184228	32185228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	134440.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	6.23906485672248	6.27237686065748	5.85799351749351	5.66686433692364	5.90823805242874	5.61616733965349	-0.696908247954219	0.0304616744322862	0.210957553571508
Merged-chr1-192770682-4	chr1	192770201	192771201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 1 of 11)	CpG	518.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	7.01074643986958	6.73682918652308	6.68179505322414	7.18848591520693	7.13085467003784	6.70711730708915	0.324853832709388	0.242514409321032	0.639642928115406
Merged-chr17-10817573-2	chr17	10817073	10818073	+	890.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 1 of 4)	L1MA7|LINE|L1	22618.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	2.86472113170127	2.82289270467853	2.67549775191568	3.07729697902226	3.20168152537813	3.07230093622169	1.57524831915441	0.0306069915532871	0.211558942778361
Merged-chr13-56614888-2	chr13	56614388	56615388	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5302.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.49585236118929	5.19991130045112	6.17802840088079	5.4972486517634	5.4809254429867	5.73602235151677	-0.203045618946985	0.617258038983065	0.888808400312019
Merged-chr4-133612959-1	chr4	133612459	133613459	+	800.5	f1_c57bl6.idr	exon (NM_001017968, exon 6 of 8)	exon (NM_001017968, exon 6 of 8)	-10791.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	4.28510678150473	4.26459734327006	4.60613327605049	3.60448590968169	3.49022451331198	4.01972228268773	-2.1003367923254	0.000199215742059051	0.0050004052685519
Merged-chr3-65942213-1	chr3	65941713	65942713	+	780.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	16036.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.11266753081258	3.20696178408767	3.11181688763606	3.21855599681938	3.41268252496741	3.35802683863444	0.773768610525052	0.218303112276073	0.612458824761069
Merged-chr13-42976312-4	chr13	42975822	42976822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 2 of 12)	MIR|SINE|MIR	110075.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.30784974590991	3.01379228466697	3.11055284852425	3.01725101746834	3.00605236954714	3.06408939411291	-0.552786252047968	0.40644766274182	0.780676741566939
Merged-chr1-60913344-6	chr1	60912827	60913827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009843, exon 3 of 4)	exon (NM_009843, exon 3 of 4)	4302.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	5.0745873673646	4.74381553519834	4.86097106652209	5.25575328838529	5.09854070301022	5.17549086554051	0.579959186425208	0.126164269394261	0.475010311580905
Merged-chr7-128133847-4	chr7	128133351	128134351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 8 of 29)	intron (NM_021334, intron 8 of 29)	4283.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	5.44580880124335	5.61324123438268	5.48221570555058	5.40009124082947	5.56034825416644	6.13094038611654	0.384252872909303	0.29742488307589	0.694108042302854
Merged-chr11-101119982-4	chr11	101119489	101120489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134024)	promoter-TSS (NM_134024)	-142.0	NM_134024	103733.0	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	5.93366113193189	5.71487016607862	6.0434280981053	6.22934439435171	6.12639667215006	6.10410995781963	0.448896838917831	0.131064028635513	0.483837071958386
Merged-chr12-75721159-4	chr12	75720657	75721657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	14572.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	7.45810444937464	7.6799039752629	6.77285253759919	6.51042565611815	6.51329883306974	5.9610440439651	-1.54453358198523	8.21547410017172e-06	0.000337743660537099
Merged-chr6-87805696-2	chr6	87805196	87806196	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4061.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	7.11057658995092	6.78951482168646	6.83567817436729	7.27391727511662	7.45688063121376	7.14472020107648	0.574959798848681	0.02550122119488	0.189303739243784
Merged-chr10-40063444-2	chr10	40062944	40063944	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-38176.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	4.4072409035151	4.36513884362346	3.82130033606495	4.13502369106886	4.19093523923236	4.11006276382261	-0.240310319668753	0.641902319819232	0.899212233198401
Merged-chr3-30848353-2	chr3	30847853	30848853	+	868.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-7597.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.79297598627908	3.81305512932445	4.04182600898918	4.45810974216915	4.5666361861475	3.95691739802547	1.37906939255809	0.00793464624862611	0.0855812776207117
Merged-chr8-122911748-4	chr8	122911301	122912301	+	805.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63427.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.98959961538533	5.01317306031575	4.80671833116814	5.4948544990957	5.59287699400187	5.03569357287002	0.944076392257197	0.0144705128081476	0.129480799714849
Merged-chr2-69135756-4	chr2	69135254	69136254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181547)	promoter-TSS (NM_181547)	-46.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	3.27696130858727	3.27429547200777	3.38940719212362	3.21860256802438	3.04518944332959	3.56211684455749	-0.111566894560356	0.863531247858533	0.968269312109804
Merged-chr12-8947476-2	chr12	8946976	8947976	+	813.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-453.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	4.08531043766388	4.10801904131221	3.96756127474884	4.06719358112647	4.09493506454204	4.08622428069824	0.067391209981839	0.888318130586599	0.97401529899353
Merged-chr17-24007648-4	chr17	24007177	24008177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9577.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	7.25628520739954	6.95182024208795	7.17234061718587	7.05102182159206	7.12336274381434	6.86729894856983	-0.160386921710068	0.5262390859054	0.849360400376144
Merged-chr17-86754325-3	chr17	86753763	86754763	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010137, exon 1 of 16)	5' UTR (NM_010137, exon 1 of 16)	399.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.4942755505171	4.69715250271961	4.52610608815783	4.15400619924694	3.99203480902947	3.98784315886906	-1.44076688438656	0.0020469158572281	0.0315299477224167
Merged-chr4-108318851-4	chr4	108318359	108319359	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9293.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	5.12580007714799	5.10047372965661	5.16790450653816	5.13747585024707	4.94301754450678	4.99155241632418	-0.220764225115972	0.543818999549033	0.857551302506722
Merged-chr7-97798266-4	chr7	97797768	97798768	+	959.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	L2c|LINE|L2	9727.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.97654247339196	4.553904102917	4.85831339418696	5.19971248977937	5.09599669091362	5.10253182792608	0.708851145247687	0.0713193653016401	0.350418762800051
Merged-chr1-92921021-4	chr1	92920427	92921427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181405)	TTS (NM_181405)	10102.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	4.61017910159336	4.82479506117415	4.71489942155915	4.63669287598568	4.43965137153849	4.40167347366795	-0.537589506915248	0.202952248853776	0.592804308646864
Merged-chr7-98357429-4	chr7	98356924	98357924	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3864.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.52162072591742	6.70611355782667	6.46794181331033	6.63181039759453	6.75563803454448	6.19903362598379	-0.0147481477209235	0.95995983411073	0.990334145750493
Merged-chr19-43940194-4	chr19	43939685	43940685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028029)	promoter-TSS (NM_028029)	13.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	6.213905607069	5.71858002082743	5.80155281031158	5.84445518914483	5.36893418723321	5.59265989685032	-0.581343919520502	0.0996260017845391	0.420945531736552
Merged-chr12-75669650-4	chr12	75669167	75670167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028203)	promoter-TSS (NM_028203)	-130.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	6.90319357089319	7.37722573723168	7.00586386423735	7.23022615860324	7.21733352007907	6.82808246575905	-0.00723061774382319	0.979366056506263	0.995221944653849
Merged-chr13-43790153-2	chr13	43789653	43790653	+	842.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5041.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.39102463727428	8.44853203204217	8.06242589089166	8.07553533469377	8.37873803967673	8.03659884250949	-0.193919966212381	0.415763661686597	0.786658088583085
Merged-chr6-82994274-6	chr6	82993692	82994692	+	996.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	RSINE1|SINE|B4	39279.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	6.09313324733116	5.7717030999774	5.54253940206536	6.15536028376254	5.97293066213522	5.91075038470705	0.322140128796594	0.327358353723274	0.719528058616764
Merged-chr5-118614807-3	chr5	118614335	118615335	+	666.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54116.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.64898872864885	2.4777059383751	2.78450319472925	2.49380838268817	2.37253729295818	2.55366674139439	-0.998992834959122	0.215542992749515	1
Merged-chr1-136571594-2	chr1	136571094	136572094	+	698.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53307.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.97135508215987	3.99981398950895	3.95497240628698	4.47416634422219	4.24504826268413	4.59849235046762	1.27713478699034	0.00783462534866573	0.0848170057262266
Merged-chr4-116709019-1	chr4	116708519	116709519	+	589.0	f0_balb.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	424.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	5.41290697998721	5.05548201617637	5.52186129837522	5.35595714253666	5.39847172393344	5.08281122431806	-0.0816180719556573	0.826792534671561	0.959278302444461
Merged-chr14-55556565-2	chr14	55556065	55557065	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3464.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	3.68367366947895	3.65913763005445	3.62597884523001	3.71387594762305	3.29032875100307	3.64363082338769	-0.355250214121716	0.544257422732221	0.85765692399006
Merged-chr11-121707724-2	chr11	121707224	121708224	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	5297.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	5.23687156056791	5.38380779375318	5.18152321738471	5.04529272954793	4.9576826644639	5.14587764452855	-0.48282515694422	0.179113166400483	0.560540407321023
Merged-chr6-137826818-1	chr6	137826318	137827318	+	596.0	f0_balb.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	72241.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	3.92728528636109	3.8809002418085	4.4613293230312	4.08413114876024	3.83922034658	4.37316360445635	0.00424609823801162	0.993814243402156	0.998795738347524
Merged-chr19-18670741-4	chr19	18670249	18671249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-31.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	6.67706361921268	6.36929858441593	6.42457021202126	6.6881118783842	6.18390224937128	6.30893510730491	-0.143487399448407	0.634270317815629	0.896306748317281
Merged-chr15-6553869-2	chr15	6553369	6554369	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25978.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.5467844521529	5.38271341213984	5.51003791879194	5.43958213086532	5.15981667763614	5.57230131830733	-0.176944766984145	0.61156361638948	0.886146894079858
Merged-chr1-80340132-6	chr1	80339626	80340626	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	564.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	7.32144778152373	7.42061845108141	7.3572272846661	7.45485560662704	7.09344788775139	7.4144119990642	-0.0637566029092185	0.793861573778976	0.950531747588938
Merged-chr5-138085102-4	chr5	138084606	138085606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029869)	promoter-TSS (NM_029869)	22.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	8.03522075321649	8.45358337703538	7.58459136272624	7.95002527590545	8.24527687931597	7.67140161832767	-0.139430995693311	0.645243865015142	0.900460238105405
Merged-chr12-55459950-4	chr12	55459455	55460455	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32692.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.03476678423862	3.95771532682925	3.96124407337707	4.1079215817078	4.16954576935908	3.70504553268596	0.10460083950187	0.84179159500956	0.963002495523594
Merged-chr12-52501134-3	chr12	52500636	52501636	+	837.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14941.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	3.66719060547059	3.606954186487	3.59694248134948	4.1838026117198	4.35356148079471	4.36150600503663	2.10082419235066	6.53400205193478e-05	0.00197702270086323
Merged-chr5-20816023-3	chr5	20815521	20816521	+	906.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	66103.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.23606195746257	3.38499205669849	3.08018789628126	3.40473673969863	3.11943023444069	3.44492055197609	0.322629109687941	0.620399257656662	0.890068302891401
Merged-chr13-101909196-4	chr13	101908711	101909711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140994.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.84541204421768	7.78155915168542	7.53312609265121	7.65988235389403	7.83811847376611	7.43094592259009	-0.101357003132156	0.678623602333853	0.913513936154101
Merged-chr12-85687005-7	chr12	85686449	85687449	+	948.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016767, exon 1 of 3)	exon (NM_016767, exon 1 of 3)	229.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.82532838120534	6.99625258811776	6.64923319163702	6.89469165728751	6.50850145490041	6.56953001530727	-0.265254801398999	0.339624171482976	0.729313720985741
Merged-chr11-119945281-2	chr11	119944781	119945781	+	794.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	2189.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	4.81726348674412	4.52100942219095	4.21626784948933	4.39200564927732	4.25840171926895	4.38185457646692	-0.532310354691261	0.255966823097455	0.652967300763169
Merged-chr14-63448055-4	chr14	63447522	63448522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	11628.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	5.81848957504555	5.80582261026561	5.53739821146446	5.91374436515622	5.40458131200845	5.447410452932	-0.225411468197587	0.520282178150048	0.846311592349268
Merged-chr6-34350390-4	chr6	34349878	34350878	+	856.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3768.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.87417986572412	4.75251220428559	4.23106019284639	4.00530596021192	4.07320921526571	3.92728101181005	-1.73446129923868	0.000613881971657448	0.0123470851094206
Merged-chr1-155070031-3	chr1	155069527	155070527	+	652.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	13237.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.25174349761976	5.06160344360673	5.11997233796097	5.04169189509992	5.12295062624089	5.04577134733355	-0.155028273288448	0.66803034559744	0.908976375106763
Merged-chr16-42608486-1	chr16	42607986	42608986	+	704.0	f0_balb.idr	Intergenic	Intergenic	267101.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	3.17766176268402	3.24631274212432	3.07882800600707	3.08680270209842	2.86765046100024	3.26615217076361	-0.421406096568502	0.534499074852207	0.853068627162717
Merged-chr11-70466872-4	chr11	70466433	70467433	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6949.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	7.35162090954195	6.85949745118618	7.18050420617051	7.06816923155683	7.40955673975947	7.28470941263684	0.177322481943076	0.510697592759525	0.841033023631175
Merged-chr4-150567177-1	chr4	150566677	150567677	+	570.5	f1_balb.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	84997.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.68659173256126	5.82036728278008	6.11374609301667	5.71082549164283	6.10456602465277	5.73159208785238	-0.00346475241287665	0.991731641913535	0.998351393644539
Merged-chr9-58804411-3	chr9	58803952	58804952	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19060.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	4.70805484352972	4.81277827146653	5.36944952498108	4.94528248776214	4.79477403511875	5.20449182085015	-0.000285815985486232	0.999471285290939	0.999920050950963
Merged-chr3-9005706-4	chr3	9005198	9006198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025263)	promoter-TSS (NM_001025263)	-975.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.15691250522858	7.15689741341444	7.04284285331571	6.9684136101482	7.24278196883423	7.16439730012122	0.0143833912009507	0.952775634872566	0.989287782503419
Merged-chr14-103013330-4	chr14	103012832	103013832	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	20471.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	2.97561971523999	2.70639665133216	2.86155154839563	3.1005916624375	2.88916803493529	3.05622789429656	0.779499200647042	0.272399564434985	0.669663338532819
Merged-chr2-73480028-2	chr2	73479528	73480528	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B4|SINE|B4	5725.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	2.51994210165696	2.70452335746012	2.83555441792344	2.53669723419076	2.26815965819102	2.79209608090046	-0.79619025916312	0.361094348453418	0.747048449576418
Merged-chr18-75369228-4	chr18	75368729	75369729	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001042660, exon 1 of 4)	exon (NM_001042660, exon 1 of 4)	1864.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	5.64119636809661	5.5699841653277	5.54225753642142	6.15110086825578	5.72329776619811	6.0780111518594	0.722986486525208	0.0260379717447686	0.191443629313308
Merged-chr8-83955515-4	chr8	83955009	83956009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024184)	promoter-TSS (NM_024184)	-185.0	NM_024184	66929.0	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	4.6793715428417	5.15659403848365	4.98431073488216	5.06938573253889	5.18938929685338	4.86219320463243	0.211986848301291	0.599099150256415	0.880902871165758
Merged-chr3-81057924-4	chr3	81057414	81058414	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	MT2A|LTR|ERVL	21498.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.46068608759306	6.04865916254674	6.22028388087388	6.08299024975822	5.94689744729497	6.08984682028479	-0.372098279962942	0.214398111737954	0.607538973573768
Merged-chr9-61965728-4	chr9	61965253	61966253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18954.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	6.35546638144167	6.21493387730065	6.36664867970202	6.16029900974653	6.24207331376662	6.23123209529611	-0.164638044665012	0.549737243357473	0.86042385916162
Merged-chr3-9038528-4	chr3	9038027	9039027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23437.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	3.51387518149145	3.58838034716774	3.56842667559117	3.88978326950865	3.71643524665486	3.7470115765256	0.781119155330507	0.151900685737745	0.519634796559235
Merged-chr14-77854108-4	chr14	77853620	77854620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 2 of 5)	intron (NM_025384, intron 2 of 5)	20797.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	7.55500229539034	7.8731293309867	7.31944555758163	7.32231036476799	7.80312104546622	7.26901868523044	-0.16260945974225	0.568914738504578	0.868783173570125
Merged-chr3-40949694-4	chr3	40949179	40950179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040399)	promoter-TSS (NM_001040399)	-952.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	5.40706124712171	4.60724159729573	4.79679945391561	5.41596829014003	4.67079066639885	5.08898529748875	0.214742597574688	0.654689673473054	0.903878958900373
Merged-chr7-35396332-3	chr7	35395842	35396842	+	658.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028120)	promoter-TSS (NM_028120)	425.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	5.06030998010634	5.48269555725143	5.13299078166983	4.82015312901272	4.99294481009725	5.29237840488444	-0.422861115882846	0.284498959147179	0.682238657188254
Merged-chr8-66346140-4	chr8	66345639	66346639	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	Lx5|LINE|L1	-40162.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	2.9306748181149	2.8249653479975	2.81636185441836	2.95584883095286	3.06432027162666	3.12739021313102	0.910172463357863	0.187084947483864	0.572020442060608
Merged-chr13-56748042-1	chr13	56747542	56748542	+	611.0	f0_balb.idr	Intergenic	L2c|LINE|L2	44374.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	2.97334141800223	2.94729883957053	2.82778725701447	2.90609789771085	2.66749250838388	3.02194615984581	-0.258647701625301	0.721127090539587	0.928416261018381
Merged-chr14-25754399-2	chr14	25753899	25754899	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	14457.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	2.98024572000772	2.69428324367354	2.77484186910597	2.89758406258006	2.70566182545394	2.91031388802009	0.0666198721296158	0.927479081702043	0.983584626679457
Merged-chr17-5667846-2	chr17	5667346	5668346	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-130811.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	1.99654815468566	1.96642669698487	2.27206693096727	1.98689993839108	1.74981297096665	2.1560212288781	-0.841372996706293	0.421933700793563	1
Merged-chr11-68475846-4	chr11	68475348	68476348	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 3 of 18)	intron (NM_177320, intron 3 of 18)	-27171.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.76292779567185	5.81038045156795	5.88622962275979	5.57638540643227	5.38938145923755	5.44211427150322	-0.645729283620043	0.0421519597793903	0.257082772800961
Merged-chr18-36720110-4	chr18	36719597	36720597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6718.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	5.1950721857997	4.97068543183843	5.33123235687374	4.91241601107976	4.769086697767	5.42121285077762	-0.244320737685132	0.554156753686673	0.862650023515518
Merged-chr12-55475620-2	chr12	55475120	55476120	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	17027.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.56163355676655	4.18967984348886	4.33992621163373	4.30251510442891	4.13009457564397	4.4913339319438	-0.179783782002304	0.703237757239592	0.922108924938678
Merged-chr1-55511733-4	chr1	55511232	55512232	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	105786.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.30477152167221	3.36076925851721	3.48101964620596	3.46906450175361	3.48289477746413	3.38640215809911	0.267749811269731	0.648537069086894	0.901859560058813
Merged-chr1-106883733-7	chr1	106883207	106884207	+	834.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360853)	TTS (NM_001360853)	22532.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	4.81070043109676	5.02327510887519	4.83524059209804	4.20165082247785	4.51223985939458	4.36296091294448	-1.2582174374695	0.00397526925859005	0.051699625581238
Merged-chr15-39772303-2	chr15	39771803	39772803	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	RMER13B|LTR|ERVK	-24742.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	2.86150246750069	2.72174743725888	2.63496132249221	3.15244595535051	3.03009753714882	3.03456581612359	1.61852440528362	0.0296662003143858	0.207381768945595
Merged-chr8-123805989-3	chr8	123805482	123806482	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009003)	promoter-TSS (NM_009003)	-14.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	4.21750810034315	4.12199692956171	4.36683348242365	3.36955181046822	3.15263503118041	3.47045078964707	-3.5573391132253	1.49279703600592e-07	1.01647017816678e-05
Merged-chr11-121451903-4	chr11	121451399	121452399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029878)	promoter-TSS (NM_029878)	-50.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	3.98605350210529	4.03983647836735	4.33104920566934	3.89697255369227	3.92319234273445	3.95231997107083	-0.578476945882429	0.249325471936382	0.646251553365766
Merged-chr2-154436763-4	chr2	154436248	154437248	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172860, intron 1 of 10)	CpG	264.0	NM_009823	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	6.27676597296446	6.4299516812821	6.45793802427397	6.38493811370176	6.44733846503246	6.11401143301982	-0.0873245578577916	0.757012780884039	0.939805434945678
Merged-chr7-25251660-6	chr7	25251205	25252205	+	838.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-947.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	4.75569301434022	4.73004010120145	4.87779546435803	4.86529972765485	4.9481410385099	5.04604456383842	0.377196710265093	0.325563440364681	0.718159390122652
Merged-chr15-73185372-4	chr15	73184833	73185833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153178)	promoter-TSS (NM_153178)	-386.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	7.7534158809378	7.40024875089595	7.21552920317317	7.5866984325368	7.12476802009152	7.28516276814084	-0.201329621179621	0.466637973785542	0.817586753758551
Merged-chr17-29717034-4	chr17	29716535	29717535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163741)	promoter-TSS (NM_001163741)	-18.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	3.69487323777697	3.8444969396691	3.64032778126765	3.99230689888984	3.50256110318049	3.48097892793605	-0.16078236759667	0.785259412926124	0.947850129107983
Merged-chr4-133150161-2	chr4	133149661	133150661	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	19528.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	4.88351224579479	5.07290692001972	4.95805605996388	4.82992145126651	4.67938211846305	5.24762337332741	-0.105814139748777	0.795998085710614	0.951396269938008
Merged-chr16-17409238-4	chr16	17408737	17409737	+	883.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-2923.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	6.5471367341263	6.571684969078	6.64158016307178	6.2173268886544	6.22456939871844	6.22867554142338	-0.590538148323836	0.0259621721384838	0.191088935807073
Merged-chr1-67398202-4	chr1	67397711	67398711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	275184.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	5.39517448366075	5.35440212409147	5.40729057241544	5.23383951494646	5.48099037969408	5.21746812651676	-0.111391104942896	0.747094668726085	0.936552918354416
Merged-chr2-129632496-2	chr2	129632017	129633017	+	922.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291021)	TTS (NM_001291021)	37055.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.16939433325967	7.12001102196244	6.91410252867707	6.68898762951794	6.76842921083432	7.07917837189707	-0.352551711320481	0.178268692897106	0.559389924835031
Merged-chr7-133124298-4	chr7	133123812	133124812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009980)	promoter-TSS (NM_009980)	-829.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	7.27889251854354	7.64233112345635	7.20842731019411	7.04203819534053	7.23599822476272	7.01935364253345	-0.431734587197717	0.0961596011183607	0.413411154195982
Merged-chr12-33132068-4	chr12	33131528	33132528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	15558.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	4.15269089169074	4.12957482521003	3.91854236445929	4.16316663476015	4.02922251400401	4.04013413520085	7.46060909349457e-05	0.999877965880022	0.999986127056153
Merged-chr5-43841691-9	chr5	43841244	43842244	+	950.796326	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009763, intron 8 of 8)	intron (NM_009763, intron 8 of 8)	22851.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	6.86806117442092	6.65581927459529	6.87862227579837	7.13616331689795	7.05704893493524	6.80225844487387	0.326093415253356	0.207071620515754	0.597920729067479
Merged-chr11-54956082-4	chr11	54955576	54956576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199275, exon 2 of 19)	5' UTR (NM_001199275, exon 2 of 19)	6864.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	8.11901028223997	8.10154936484923	8.01065051425564	8.14288575916203	8.13222659987299	7.87901791803695	-0.0248349945551101	0.90872239331987	0.979315799810384
Merged-chr10-25151379-3	chr10	25150873	25151873	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48797.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.29071056802985	4.10142610377111	4.4151872879998	4.28517873955685	4.066298745549	4.39931222039032	-0.0551867627129427	0.907459155590905	0.978939051225517
Merged-chr6-114920781-3	chr6	114920283	114921283	+	824.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	1038.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.29288969457699	6.42461705995619	6.35827568265995	6.43849021994544	6.644919576814	6.0743418970982	0.102618302298162	0.730519081632023	0.930886577604787
Merged-chr17-33951483-4	chr17	33950941	33951941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	47.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	6.62639193146561	6.51237455560561	6.71533936851009	5.90508915461865	6.16248331541148	6.504572406111	-0.67416087405961	0.0248169802880996	0.186217990424041
Merged-chr9-66620932-4	chr9	66620434	66621434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27819.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	3.89367764043618	3.86297528598758	3.69732056277467	3.81267517197998	3.7722030925853	4.01878662028223	0.121718000223385	0.816739976750826	0.956754861188725
Merged-chr10-117149195-2	chr10	117148695	117149695	+	667.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-721.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	5.23221137559044	5.34051111669943	5.41724086281018	5.47056722561652	5.81337642055989	5.25688916908102	0.429659211247661	0.233456659362982	0.629826270159681
Merged-chr1-173913064-4	chr1	173912547	173913547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301745)	promoter-TSS (NM_001301745)	-1.0	NM_001033450	381308.0	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	7.70633778442623	8.0534155885727	7.2513499157106	6.64799336809358	7.21503639162116	7.09330377845417	-1.04372167131759	0.000792584827707098	0.0150741481928805
Merged-chr3-89214883-1	chr3	89214383	89215383	+	645.0	f0_balb.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-297.0	NM_013691	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	5.70580715500363	5.33400014860326	5.11609448076402	5.02072080512749	4.9942836365766	4.79084081576245	-0.968446678519725	0.0137164872660197	0.125069220847341
Merged-chr13-37608016-2	chr13	37607516	37608516	+	754.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218022.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.66713848103032	2.65426256474942	2.75692934643753	2.5288978128559	2.51572494697634	2.82931917291608	-0.362268917370027	0.637556017111874	1
Merged-chr5-118465117-4	chr5	118464626	118465626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95593.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.4239295268422	3.78807737420743	4.02599229161613	3.98523616993078	3.44150485454832	3.99900817109054	-0.828412389628444	0.167033021042358	0.542655146606767
Merged-chr5-53809632-4	chr5	53809132	53810132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144517)	promoter-TSS (NM_144517)	5.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	3.07473400871891	3.27634523537536	3.06384490765774	2.9837494142267	3.01710084783045	3.19425164030666	-0.363092848288262	0.584003400413105	0.874371294853541
Merged-chr7-43528357-2	chr7	43527857	43528857	+	588.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021293, exon 6 of 6)	3' UTR (NM_021293, exon 6 of 6)	4814.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	1.84641106408178	2.08136472784777	1.94963291332647	2.10105510276558	2.00919633579683	2.2272142252663	1.14975241733349	0.237260280659083	1
Merged-chr10-57722571-4	chr10	57722078	57723078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-62345.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.89939526881773	6.95772308419025	6.71050354063774	6.96512510883136	7.21352868369132	6.89421579385119	0.265486047218367	0.304308336303755	0.70084663420418
Merged-chr11-117830617-4	chr11	117830126	117831126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4612.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	8.78269710538725	8.36972716892923	8.13688385285118	8.57521161951833	8.79892222363677	8.18532673688669	0.119902008483757	0.665308223356272	0.907762144972922
Merged-chr15-83134916-4	chr15	83134404	83135404	+	968.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-12103.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	6.22812801102593	5.9064144677376	6.22638257315231	6.3079433971615	6.39262875050801	6.42002873624134	0.417637501531524	0.146286549433226	0.510188727188373
Merged-chr16-91437692-2	chr16	91437192	91438192	+	699.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-27412.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.42927548086691	3.61276406115215	3.65237486934511	3.53639835500486	3.46539239504397	3.33710479228887	-0.413129960638503	0.479866806148784	0.824391932626821
Merged-chr13-95875312-1	chr13	95874812	95875812	+	596.0	f1_balb.idr	intron (NM_027711, intron 1 of 35)	L1MB3|LINE|L1	16610.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.71238670818112	3.49319874859755	4.24484328091281	3.79951483522625	3.96521697207722	4.42613112565347	0.690440812915423	0.255859139630865	0.652832703394715
Merged-chr13-56634525-4	chr13	56634037	56635037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24951.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.14699292688372	3.89449765098496	3.9650445677	3.8791579389037	3.82665764861378	4.25938383893584	-0.0480476762756059	0.92658820339609	0.983551822187064
Merged-chr6-39229822-2	chr6	39229322	39230322	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23049.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.30265734120189	5.39983311185234	5.63243598390061	4.97555991276968	5.1676166816455	5.45698942018706	-0.474086281186239	0.198443538448413	0.586749382074533
Merged-chr7-80647574-4	chr7	80647089	80648089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	11572.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	6.95226668736593	7.0070380849702	6.94738251514997	7.0346516491466	7.28863288451308	7.04648605871963	0.25117821792738	0.305224495882471	0.701486464326093
Merged-chr2-153081347-4	chr2	153080835	153081835	+	849.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145536, exon 9 of 9)	3' UTR (NM_145536, exon 9 of 9)	15380.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.1336348165209	2.84088764459307	3.22441741090893	3.33346867352419	3.22578641556186	3.61012148823247	1.3436190006649	0.0497810158289744	0.283808068865865
Merged-chr9-95689169-1	chr9	95688669	95689669	+	739.0	f0_balb.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	51541.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.44812449548806	3.36255207498727	3.7091543551656	3.66195239571585	3.55594647264253	3.72875400625289	0.500724437199741	0.383462079492875	0.764932855957392
Merged-chr1-45826358-4	chr1	45825842	45826842	+	863.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	6.34690855609244	6.66322578093267	6.68695209109019	6.38995995669483	6.78769440351576	6.23242111040509	-0.104417579712432	0.732543150725113	0.931782229960786
Merged-chr7-19933693-4	chr7	19933174	19934174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12531.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	6.86293086759515	6.83364194755592	6.83528942122192	6.41025800288838	6.36571232149922	6.31301698914602	-0.762289536384893	0.00286292636470575	0.0405961787584247
Merged-chr13-116964226-3	chr13	116963725	116964725	+	620.972229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	61291.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.09447590826162	3.18638755254008	3.21246952350942	3.55969099203461	3.90869132810784	3.66815732209243	2.38717726448567	0.000212185335614785	0.00524837021576548
Merged-chr9-122923154-4	chr9	122922650	122923650	+	961.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009544)	promoter-TSS (NM_009544)	72.0	NM_009544	22646.0	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	4.1701913160438	4.18302299875373	4.39895803791692	4.489012331811	4.49444122234379	4.42337767645687	0.592246498265931	0.182309867528592	0.565061441455675
Merged-chr6-149355979-2	chr6	149355479	149356479	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1F_Mm|LTR|ERVK	46565.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.3443841140841	3.33696187540203	3.5255501115026	4.32592427162026	4.37651505741713	4.35211961767867	3.37102239421141	2.45817057648184e-08	2.04131194938025e-06
Merged-chr1-51501497-4	chr1	51500994	51501994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23095.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	7.06033374894499	7.42161677705859	7.13539634175706	7.23556717864742	7.26573426964447	7.30010001675305	0.0686020337044683	0.780785289412417	0.946078518476608
Merged-chr9-124311720-2	chr9	124311220	124312220	+	839.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243117, exon 2 of 5)	exon (NM_001243117, exon 2 of 5)	974.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	6.94090359453832	7.21609215364969	6.67845973644307	7.04727320438604	7.16930575024651	6.61347627768442	0.00370865447120032	0.990026366662379	0.997699191346824
Merged-chr5-99239829-3	chr5	99239299	99240299	+	606.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13128.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.02344457514126	4.9369176942821	5.58762189192677	5.27922690632093	5.02087801624076	5.2954831329723	-0.00632977381784345	0.987487446259033	0.997218304929226
Merged-chr17-24521612-2	chr17	24521112	24522112	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	6326.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	3.15067678476161	3.23217674305855	3.71739596308903	3.33645423265454	3.29619950620062	3.64393738528648	0.172324452314022	0.792315644685187	0.949929758256028
Merged-chr8-85082286-4	chr8	85081778	85082778	+	935.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-991.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	6.69196086986632	6.39068719112864	6.43048087050136	6.61424124650186	6.64989315778728	6.22517777831755	0.0111089495463679	0.969460059417794	0.993164504846051
Merged-chr19-8797910-2	chr19	8797410	8798410	+	759.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026329, intron 2 of 7)	B1_Mus1|SINE|Alu	647.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	6.67696738977441	7.16566454753487	6.6152555379748	6.5644935991889	6.98455753138557	6.95120753885305	-0.0071730163095525	0.980984990599892	0.995657460731624
Merged-chr2-155275622-2	chr2	155275127	155276127	+	896.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	-737.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	4.44439490476482	4.29829233909473	4.393119726737	4.52332267535635	4.33447502031873	4.50270638720943	0.184096791246697	0.674294725095972	0.911841916826811
Merged-chr16-4469780-3	chr16	4469278	4470278	+	839.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49280.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	3.98460728578222	3.78202558097474	3.66114400680507	3.61422452433214	3.49686913690737	3.78438605079436	-0.646987056599907	0.245660412800923	0.642735327747042
Merged-chr19-12440461-4	chr19	12439935	12440935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12530.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	8.21083615519178	8.15253325625122	8.0677510029185	8.25274218540618	8.44944105371199	7.94181801420369	0.131160061957343	0.57695362324899	0.87187513064165
Merged-chr14-47358579-1	chr14	47358079	47359079	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-15281.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.36430872191392	5.34440767127089	5.33740963597601	4.40063313582249	3.89456821128954	4.4655026901478	-2.63744901865268	9.3703007927907e-09	8.53980272033438e-07
Merged-chr2-152847924-4	chr2	152847418	152848418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141976)	promoter-TSS (NM_001141976)	-46.0	NM_001141975	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	5.29762681578908	5.37748885937137	5.41401527360225	5.64543242273286	5.91494799223186	5.53747919995594	0.68104272438576	0.0418287150673914	0.25588029137829
Merged-chr17-63501337-3	chr17	63500838	63501838	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	-758.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	4.15370967686747	4.46199208350432	4.32949676357995	3.80789262483273	3.57655402500647	4.08766082199352	-1.47893371087511	0.00562697000103918	0.0666110285739747
Merged-chr2-38209344-3	chr2	38208849	38209849	+	762.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	78035.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	3.40376436315492	3.39980444533363	3.52515439916161	3.5479347112465	3.3514864899033	3.59523228749955	0.207551495767272	0.721926167105024	0.928606209603791
Merged-chr18-21725494-2	chr18	21724992	21725992	+	995.416626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-73124.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	2.7325007968041	2.68366768717195	2.78349308364157	2.45127089093406	2.5479504021823	2.5458415125599	-1.25543885017178	0.109071341734372	1
Merged-chr3-84885173-3	chr3	84884678	84885678	+	846.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	21033.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.08203260304774	3.91924250437547	3.87137703309419	3.71435810096451	3.61283135317102	3.98911658664632	-0.611715672668335	0.252419208780727	0.649854502606025
Merged-chr8-111338702-4	chr8	111338205	111339205	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029005)	promoter-TSS (NM_029005)	-500.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	5.73480690511281	5.90647868916783	6.24578247463619	6.3130712576825	6.50818956589119	6.48794763454599	0.79667402344327	0.00855978275892084	0.0903975636253694
Merged-chr19-4138132-4	chr19	4137643	4138643	+	935.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144532, intron 3 of 5)	MTD|LTR|ERVL-MaLR	1466.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	4.86117642051613	4.67814533200094	4.92948527313871	4.82221579012914	4.74243740288549	4.99375775190353	0.0614251617581555	0.876646013507067	0.971344419120637
Merged-chr11-78080860-4	chr11	78080365	78081365	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	-482.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	4.69181871377031	4.99581100272476	5.49292591861981	5.23901504496704	5.38216330079874	5.10647863946431	0.331184549564886	0.429370999677892	0.795682190695026
Merged-chr1-176813579-4	chr1	176813133	176814133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1027.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	7.93440413672962	7.82772805936294	7.59220211835291	7.88869675390933	7.92070419384854	7.63910164702517	0.0416795201775881	0.859357706647818	0.967267211164924
Merged-chr6-48830495-3	chr6	48830042	48831042	+	703.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10446.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	5.75682463513324	5.63658920129364	5.8800442097302	6.12148732949951	6.02747403532893	6.42389545919799	0.762395653594726	0.0140395204611139	0.127061172343742
Merged-chr18-66475485-2	chr18	66474985	66475985	+	992.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16881.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.31448311795025	6.03188986422863	5.88168805718267	6.46905396448705	6.31212432196372	6.52808739423098	0.556574140903986	0.0616320455825896	0.322096703023892
Merged-chr11-59191103-4	chr11	59190607	59191607	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008193, intron 1 of 7)	intron (NM_008193, intron 1 of 7)	845.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	6.14247327620157	6.24601620476812	6.29097497783726	6.2692675909677	6.54592866807544	6.33131598406665	0.28228418593789	0.31366629718767	0.708132564679568
Merged-chr13-76018700-4	chr13	76018247	76019247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178916)	promoter-TSS (NM_178916)	-35.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	6.8390485288783	7.11711173335688	6.91994203767802	7.68853742068893	7.97588090114849	7.45282463886384	1.13040512681557	1.61868269603388e-05	0.000607520747729306
Merged-chr11-61929494-4	chr11	61929002	61930002	+	936.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	755.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	7.44923931289654	7.98355958424963	7.62498535382027	7.85070794237875	8.04158589298332	7.75467037174455	0.260688445797738	0.308819514073961	0.70476767553933
Merged-chr6-29543750-2	chr6	29543250	29544250	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14468.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.85603871135424	4.64399194141938	4.44698046986009	4.69786001932646	4.76720127337697	4.84482836324697	0.228775657239865	0.583507197137216	0.874062789752135
Merged-chr15-38302417-4	chr15	38301921	38302921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.29846104526319	5.48758652441392	5.58332513134134	5.35041421112967	5.32237191907907	5.19506949828289	-0.313365035150454	0.36265312934305	0.748144036950874
Merged-chr11-88059260-4	chr11	88058760	88059760	+	918.5458369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9019.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	2.12460186474542	2.09297700832398	2.29499417618314	2.08023594456207	2.0561566823154	2.1091568585448	-0.666424451301858	0.457873255593536	1
Merged-chr3-88647206-2	chr3	88646706	88647706	+	646.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198911, exon 23 of 23)	3' UTR (NM_001198911, exon 23 of 23)	5936.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	4.55026131447357	4.40341367178615	4.73916943674545	3.96770174549295	4.11441403868585	4.10168023787034	-1.34612644649762	0.00445179994218412	0.0564156822402157
Merged-chr11-110731979-3	chr11	110731361	110732361	+	982.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236172.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	3.33164153552913	3.32277072192693	3.27443760568643	3.45033114963258	3.01948901991682	3.34659411274769	-0.120958287301411	0.851182675039256	0.965197236602657
Merged-chr18-7869872-4	chr18	7869359	7870359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360956, exon 1 of 14)	5' UTR (NM_001360956, exon 1 of 14)	146.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	8.00496253602541	8.24816222577682	7.97689412316981	8.20382810515406	7.81027387333546	8.19975272511157	-0.00826286140753741	0.972506212933518	0.993868590220018
Merged-chr7-144943499-4	chr7	144943010	144944010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3585.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.4247588898762	4.46534984441023	4.27925524968245	4.62048608634559	4.51849836085827	4.39499781217401	0.301932677483955	0.488840312452709	0.829423271678195
Merged-chr10-44539136-4	chr10	44538595	44539595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80347.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.21286061079912	6.24589925248404	6.34318921104407	6.19160577951684	6.13131060350483	6.11963325376954	-0.194881508276314	0.481287276597444	0.825021868263874
Merged-chr2-92055513-4	chr2	92055000	92056000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31330.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	4.79509749243113	5.09835430009012	4.28056072808598	4.57339851261366	4.68949348783568	4.67590174571141	-0.307198675597994	0.512620928739295	0.842068982479948
Merged-chr8-72587074-2	chr8	72586629	72587629	+	875.25	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	15306.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	3.27978917374062	3.27088821191252	3.59176944355412	3.79357739307919	3.94304114797378	4.37558087431626	2.3555206308292	0.000128839776245383	0.00351376601174233
Merged-chr9-66375033-4	chr9	66374550	66375550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 2 of 77)	intron (NM_145617, intron 2 of 77)	24600.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.75548657075574	5.4063687077993	5.56512976154587	5.7813362748346	5.74863689155847	5.65589666919835	0.27286565408687	0.401738535877092	0.777753227258936
Merged-chr5-66079541-4	chr5	66079023	66080023	+	975.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18656.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.52420056654477	5.36153205629877	4.98237615541761	5.50621446624294	5.42105730316692	5.08849815658194	0.0745971684589096	0.84558574090805	0.963834884892227
Merged-chr12-59012059-4	chr12	59011531	59012531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-14.0	NM_001361956	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	7.20328811794171	7.21804716345628	7.34078009980357	7.47356651597866	7.52636241132641	7.19999259189705	0.243128013378906	0.309989969791675	0.705554062214171
Merged-chr5-112275442-2	chr5	112274942	112275942	+	978.357178	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1249.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	3.84422559862796	3.58156041169826	3.52964467557458	4.04103882736266	3.85315296479688	3.76906273916003	0.754263085579831	0.174561477723768	0.553857442838487
Merged-chr1-36274051-2	chr1	36273551	36274551	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-626.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	7.61384901569902	7.34921741606359	7.0172943677478	7.42685147136135	7.27992438261633	7.19522992350903	-0.0791916062383368	0.766685251655058	0.942542894190371
Merged-chr10-128780375-4	chr10	128779881	128780881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10529.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	7.87754781424234	8.04776288356262	7.42694177371408	7.71122498427512	7.81174548038997	7.36953679090525	-0.240099300797085	0.380159886920508	0.762316998936778
Merged-chr5-99214667-4	chr5	99214170	99215170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38257.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.31544096804674	6.17505582976539	6.08136191312869	6.2718323685441	6.17769078935654	5.92670336774522	-0.0973047926478596	0.740617682505435	0.934617513566659
Merged-chr1-72429399-4	chr1	72428900	72429900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045533, intron 3 of 3)	intron (NM_001045533, intron 3 of 3)	107164.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	4.81617950180519	4.84511066892816	4.78935799196895	4.64589124576462	4.60980320142095	4.28835783493177	-0.666858557686312	0.115666445278047	0.454022718119431
Merged-chr15-86292293-2	chr15	86291793	86292793	+	812.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 2 of 9)	intron (NM_001358062, intron 2 of 9)	14618.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.84943189460274	4.72866423213463	4.13577897041801	4.1917405430754	3.99391058264047	3.99102795601209	-1.46803854440863	0.00395326267991189	0.0514777904648057
Merged-chr17-80130890-4	chr17	80130387	80131387	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	3416.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	4.51809531230787	4.23613732455542	4.11919952075699	4.16261797119347	4.32337945135031	3.92602612374746	-0.40627350134467	0.419046919606897	0.788801788481746
Merged-chr13-54342817-4	chr13	54342272	54343272	+	901.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28577.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	4.47647961090792	4.46754647049079	4.72373496360957	4.69642580984085	4.37576494136099	4.96133143364625	0.319340652791103	0.477533021811091	0.823237639056184
Merged-chr9-102521540-4	chr9	102521050	102522050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 4 of 10)	ORR1E|LTR|ERVL-MaLR	15412.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	4.30298705378657	4.51157535734971	5.04004684619601	4.29382356586803	4.76992840656295	4.66101736037002	-0.127010201605423	0.795678345720444	0.95127344528235
Merged-chr12-111946881-4	chr12	111946355	111947355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2373.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	5.02431426844849	5.33568147223825	5.02480138528889	5.02569576815984	5.09669807192451	5.22468031887775	-0.0642493491116004	0.863001415888488	0.968149570765519
Merged-chr15-78302891-1	chr15	78302391	78303391	+	618.0	f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	2830.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	4.44915008697387	4.16167096609	4.38158592074869	4.01344438793457	3.64700065250435	3.89068882097758	-1.42241853458328	0.00590551728850965	0.0689761766623121
Merged-chr11-103417321-2	chr11	103416821	103417821	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4657.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	2.82563291114794	2.90687930037984	2.80907941244546	2.90591668375616	3.15811036584306	3.06605630372362	0.95239136424397	0.172725340972134	0.551353441961457
Merged-chr12-73684852-2	chr12	73684352	73685352	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100056.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.52708973592876	3.48406500135196	3.53489846648954	3.22584941040909	3.46547427531277	3.26838460290484	-0.695235767033929	0.252624579383286	0.649949738121886
Merged-chr1-36071782-2	chr1	36071282	36072282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3382.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.37166463176246	7.21161778287543	6.89717761909967	7.07532464512805	6.91739509052066	6.68214394797533	-0.418000233624512	0.125749971346625	0.474428788996618
Merged-chr7-99145250-2	chr7	99144750	99145750	+	640.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-4106.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.49429707052769	5.51381012268534	5.84315669796493	5.57907532324174	5.68359690023787	5.7855361612856	0.125116976023156	0.703295785000899	0.922108924938678
Merged-chr18-5593198-2	chr18	5592698	5593698	+	552.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033552)	promoter-TSS (NR_033552)	551.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.84843339209371	2.8258574158736	2.90624969862569	2.8506572718315	2.51149240048006	2.66853686834462	-0.94324254538591	0.217259303261465	0.610996579127954
Merged-chr9-124125204-2	chr9	124124704	124125704	+	823.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009917, exon 2 of 2)	exon (NM_009917, exon 2 of 2)	3661.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	6.74892812015619	6.89165189553137	6.91471750351888	7.15485763009815	7.13482911242137	7.13124654568026	0.441806120464405	0.0654020958968875	0.333454509521337
Merged-chr11-85697686-4	chr11	85697197	85698197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	22047.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.72186438572154	5.76195661079169	5.36572706717018	5.32107616500034	5.23264324584113	5.23082382351566	-0.729272139036006	0.034358526539829	0.226933185928408
Merged-chr10-34195558-2	chr10	34195058	34196058	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	RSINE1|SINE|B4	11993.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.84581842193505	6.25278476851238	6.09199258489681	6.16100453564564	6.27104554626906	6.17412973832311	0.220246764568917	0.460740211865259	0.814715903367997
Merged-chr11-22814117-4	chr11	22813638	22814638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45597.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.84127128613981	6.92099331628366	6.58115483507252	7.02263180673577	7.05203112510148	6.82353932597464	0.272701655822563	0.294862183794367	0.691747281751485
Merged-chr1-62483263-4	chr1	62482760	62483760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 20 of 22)	intron (NM_001081050, intron 20 of 22)	-220057.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.31562649696914	3.60664601274341	3.30976136919107	3.00699748436223	2.97832131446794	2.95338328443729	-1.97389628799306	0.00426101848384592	0.0545714677549409
Merged-chr2-153198701-4	chr2	153198218	153199218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26723.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	8.20244009940713	8.05215648599543	7.54428637726667	7.74302084602901	8.08562821267424	7.76480813228662	-0.130659147894507	0.62870237152361	0.893843196694402
Merged-chr7-25270607-2	chr7	25270107	25271107	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2908.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	6.08857205886532	6.06457361523711	5.37719034431921	5.36831558190524	5.53269384520285	5.07393025324144	-1.00423678537598	0.00997195300081253	0.100180302997093
Merged-chr16-32400654-2	chr16	32400154	32401154	+	895.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160402, exon 1 of 5)	5' UTR (NM_001160402, exon 1 of 5)	148.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	2.97440584014754	3.13826277276638	2.97086584445794	3.06078799206525	3.32808401301644	3.38962996418038	0.996631970067771	0.137139015570718	0.494799375926127
Merged-chr10-17660961-4	chr10	17660450	17661450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62278.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.50562167357798	4.49780717976369	4.14080141137754	4.33826840781591	4.47119345488769	4.40126005956752	0.0096396347805968	0.983138660438927	0.996224826862354
Merged-chr1-23433801-4	chr1	23433304	23434304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-50629.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	6.31756313264773	6.39700343147944	6.4858044180223	6.43886639694861	6.7077778348989	6.41722406797687	0.22724169519472	0.408099738097733	0.781926100186554
Merged-chr10-78352913-2	chr10	78352413	78353413	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1213.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	5.03402939280848	4.64317808773811	4.76415369851084	5.06825970251697	4.88952236258567	4.83078830320877	0.237794015487238	0.555479094319347	0.863239342468185
Merged-chr11-53809041-4	chr11	53808521	53809521	+	812.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	38548.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.4567364435986	4.30662734551565	4.47980195505131	4.8407021158621	4.7687861495026	4.86131890097948	0.986928717389198	0.0168743069463986	0.14417058552171
Merged-chr5-64342354-4	chr5	64341863	64342863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112006.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.51702763501615	7.72243902453404	7.50868659021131	7.30414951904089	7.69498842204367	7.72309685420762	-0.00231794988967855	0.992532066752567	0.998523796268552
Merged-chr5-66174727-3	chr5	66174242	66175242	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040695, intron 2 of 2)	intron (NR_040695, intron 2 of 2)	16593.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	3.07250875526801	3.3142762762839	2.99261184631468	2.64582965412899	2.51355056947217	2.68101203407251	-3.21079390500399	0.000276876491225807	0.00651905463551696
Merged-chr5-146811909-2	chr5	146811409	146812409	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16953.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.42002898878067	5.48291816112481	5.70876964142727	6.08707092228561	5.94751873873918	6.01066929907682	0.872729625720276	0.0050301888128299	0.0614949773984652
Merged-chr9-100452678-4	chr9	100452166	100453166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33807.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.66513320646242	6.78365894088518	6.33580001906788	6.2050776247761	6.00341202167664	5.65305585549943	-1.04513293873186	0.00105838290790016	0.0188295755827575
Merged-chr10-54058545-4	chr10	54058045	54059045	+	829.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	17251.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.01413507731851	2.8429107775976	3.02541887052977	2.97826206400051	2.8751629896962	3.15401490094154	0.187779759282252	0.784512707404817	0.947647252739969
Merged-chr12-111758173-2	chr12	111757673	111758673	+	764.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	-676.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	6.03736872416308	6.56721906544505	6.04755148035882	6.04263849267835	6.36883274279127	6.03842404612862	-0.139963189635161	0.669379275506158	0.909617695915801
Merged-chr3-89088440-2	chr3	89087940	89088940	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 8 of 10)	intron (NM_028188, intron 8 of 10)	1591.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	4.45404137064792	4.23380597738755	4.27521940696103	4.48064823395393	4.23806572247839	4.15231441392286	-0.0692570083254631	0.88145994922856	0.972751886038409
Merged-chr8-84237244-4	chr8	84236745	84237745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-203.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	8.81878178439937	8.74757528954968	8.24720361658114	8.68771212613257	8.85516790241381	8.30914235430179	0.0114206422024726	0.965542870707848	0.991995030766812
Merged-chr9-73085926-4	chr9	73085389	73086389	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301230, intron 5 of 6)	intron (NM_001301230, intron 5 of 6)	-16509.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	3.20080269090709	3.11488408664963	3.07144380466972	3.12278667805043	2.7949251323262	3.36760551707736	-0.0855558231132192	0.903943953283584	0.977927898597383
Merged-chr2-152734456-2	chr2	152733959	152734959	+	769.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1792.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	5.08326471992162	5.20514146088545	4.87631429237231	5.15521688082434	4.77981635860116	4.86457330796959	-0.27578520592607	0.483844032998144	0.826584678003739
Merged-chr7-28445428-2	chr7	28444928	28445928	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 5 of 6)	intron (NM_001039192, intron 5 of 6)	4491.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	5.71103476736343	5.48315668830989	5.78335755901819	5.38239391185812	5.10249415409048	5.42018551639019	-0.695324536182323	0.0449332205579231	0.267329811995876
Merged-chr5-115272906-4	chr5	115272400	115273400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016698)	promoter-TSS (NM_016698)	-5.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	7.33270935583376	7.34655583901929	7.12608955749771	7.17687190941979	7.30273609777964	7.40358040988885	0.0244010257425267	0.918382974940751	0.981763285723178
Merged-chr2-72287584-2	chr2	72287084	72288084	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	1883.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.79583828058707	3.26709088826118	3.35069338819165	3.12403184753374	2.99737987241086	3.14703964832105	-0.296698788544689	0.67782158917687	0.913193006516923
Merged-chr4-122849517-4	chr4	122849058	122850058	+	787.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13331.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.47186991056151	4.23705150585935	4.74341010439926	4.48314079042791	4.5656207709448	4.69847136227339	0.229343647994617	0.608241419212209	0.884939098980775
Merged-chr8-31150275-4	chr8	31149768	31150768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-48.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	7.2473085039659	7.89306280502276	7.68877426446595	7.94219931540389	8.29577983583722	7.79813825291849	0.565978402767716	0.0438435229440326	0.263345979724758
Merged-chr19-38799450-4	chr19	38798977	38799977	+	822.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021315, intron 11 of 20)	RLTR17B_Mm|LTR|ERVK	19760.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	4.15782567345889	3.85706892895035	3.89793408486564	3.65206861873933	3.56831323616749	3.86810935259717	-0.929168287456095	0.0865484008413279	0.389700624972171
Merged-chr15-81810270-4	chr15	81809801	81810801	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1113.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	7.56206601343626	7.97141478490307	7.55988551467857	7.79925397866263	8.14143010553449	7.72145259050421	0.270632673682354	0.297503102915498	0.694173094123388
Merged-chr10-21608639-4	chr10	21608134	21609134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	15489.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	6.56322117313507	6.64073949181914	6.28826024096768	6.52629908455321	6.68149819199802	6.21924624311407	-0.0200743220358366	0.945380071599169	0.987907378883357
Merged-chr3-18624040-4	chr3	18623542	18624542	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143565.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	4.6202911586554	5.14226609318741	5.36133315161476	4.96435760598853	4.97014051941887	4.98762941501091	-0.204622407837398	0.626510727455757	0.892916235446326
Merged-chr5-107982438-2	chr5	107981938	107982938	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	4639.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	3.07447285655751	3.21622302450473	3.80980273427963	3.30100737069873	3.12067293568036	3.22737267327397	-0.714610277689395	0.300588746103077	0.697317619765384
Merged-chr18-53090543-3	chr18	53090051	53091051	+	850.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85741.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.23872227023396	3.12161513055517	3.19795829956682	3.85531988649932	3.891693038787	3.83686692682441	2.64666536770326	2.69782839916709e-05	0.000942405144575548
Merged-chr5-122710225-2	chr5	122709725	122710725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 1 of 10)	ID_B1|SINE|B4	2681.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.55386140883955	3.25375613608074	3.63480739003234	3.35476409449555	3.38296382511643	3.32968898880271	-0.486520142435683	0.425468694575066	0.793122312144138
Merged-chr18-46267778-1	chr18	46267278	46268278	+	548.0	f1_balb.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	13072.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	3.97743848444957	3.97922652746623	4.13466690947907	4.34103546604003	4.32535569032365	4.24929757806787	0.793599984562246	0.0893379622375658	0.39703456962794
Merged-chr3-78312917-4	chr3	78312417	78313417	+	951.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	831970.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.96362123505079	3.82296347644133	3.76026405496762	3.49026107683411	3.87910367503623	3.7783734526359	-0.397434567304802	0.474122608029437	0.82127558433078
Merged-chr11-14449404-3	chr11	14448908	14449908	+	650.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	149817.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	2.83433360906421	2.96596039289439	2.95239111704827	3.85083308520357	3.83970319656778	3.42269299468025	3.81938060838517	2.56107462348895e-06	0.000123968526626683
Merged-chr5-122778368-2	chr5	122777868	122778868	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	1042.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	3.87193330130823	3.64599217035368	3.78391438484494	3.53080697977572	3.16407864421049	3.30310108408165	-1.60737956081406	0.00920687673393896	0.095070536562568
Merged-chr15-96684466-5	chr15	96683937	96684937	+	778.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15291.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.78469533577923	3.76142923137111	3.71176067659551	3.9711982109075	3.7169304325589	3.78257913289156	0.231398025670659	0.661686773007846	0.906495637422278
Merged-chr1-131015564-4	chr1	131015065	131016065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4280.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.54595227542353	6.14612109081149	6.21782601434869	6.5432364142637	6.74892360948188	6.32049926128027	0.388804827825463	0.194198022611165	0.581378321415765
Merged-chr10-18917327-4	chr10	18916917	18917917	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72346.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	3.34959907352347	3.04726872710016	2.92663191872527	3.36022012205088	3.04260208893196	3.30753899889042	0.483980718487	0.486721807446581	0.827985697457807
Merged-chr9-118655101-4	chr9	118654590	118655590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	48381.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.22787177337488	7.03638817688616	7.23002870130042	7.25804890910235	7.1407879162536	6.92278985015604	-0.0667746819283239	0.788322476215382	0.948908830222811
Merged-chr3-21961992-4	chr3	21961506	21962506	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114646.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.99988901040643	4.7879544137663	4.62395830656828	5.17418106719633	5.07250349660894	4.85976657568698	0.490237008074337	0.21954917385644	0.613735463896719
Merged-chr8-25088527-2	chr8	25088027	25089027	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	13284.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.33090475153673	4.68260179997698	5.30397353414335	5.46019837175222	5.44524990431095	5.71976272367237	0.803328318967519	0.044122108301443	0.264311690072695
Merged-chr1-181232470-4	chr1	181231959	181232959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20481.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	7.05511123601982	7.20222544118615	7.22496872119904	6.95520219606297	6.99029682354627	6.92394001273659	-0.305792347363467	0.200507733141161	0.589556078278727
Merged-chr5-135369962-4	chr5	135369459	135370459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145414)	promoter-TSS (NM_145414)	6.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	6.25606441927557	6.69573707338344	6.48007811099346	6.61648179650189	6.45826640698879	6.6899803463483	0.149292750512206	0.599780474290202	0.881197893564797
Merged-chr5-31452412-4	chr5	31451940	31452940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	4.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	6.38147153924784	6.24091425388017	6.43055188077802	6.38539166897611	6.64155429470635	6.39707783889179	0.227616181151806	0.409781824343012	0.783037226945994
Merged-chr2-34827239-2	chr2	34826720	34827720	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	-985.0	NM_001164772	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	2.48429510937885	2.55100467755785	2.58665402761504	2.6741266193779	2.61130392306307	2.72255081446487	0.732766806402893	0.334823317391216	1
Merged-chr4-108460779-4	chr4	108460261	108461261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	CpG	1335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	7.99912025089938	8.34451885034191	7.88197147154614	8.25830740003186	8.59036460093425	8.11499596272603	0.346268917251743	0.174896868248871	0.554583232851342
Merged-chr13-70933666-3	chr13	70933189	70934189	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50741.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	3.65350843666846	3.67221125976879	3.54157454090325	3.42075916661411	3.52529035978969	3.55780895632077	-0.451882016747059	0.423490208174697	0.792050429285735
Merged-chr15-98484693-4	chr15	98484195	98485195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2012.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	7.43752244964922	7.37357103622256	7.1228579976461	7.2231568436596	7.60640740679892	7.08747005950515	0.0184162523912186	0.945264002423487	0.987875414328125
Merged-chr8-120576942-2	chr8	120576442	120577442	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 14 of 15)	intron (NM_001145896, intron 14 of 15)	12133.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.42640306595802	3.25629984584014	3.58138819997999	3.11837274481634	3.18867776827658	3.49972927869405	-0.592873002345147	0.352442066701158	0.74015397846436
Merged-chr6-72438077-7	chr6	72437599	72438599	+	872.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046011)	promoter-TSS (NR_046011)	-584.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	5.62885746231252	5.31189206404608	5.48862372090124	5.66878622241744	5.96487649430701	5.63810476937734	0.544236278428649	0.106008754444517	0.434594013486444
Merged-chr10-127318248-3	chr10	127317751	127318751	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	3.29292965033039	3.08948619928121	3.37477485385348	3.11428826490079	3.23715879391766	3.54726393273657	0.209062799314879	0.746950684386654	0.936426570480179
Merged-chr12-84762164-2	chr12	84761664	84762664	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10948.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	8.53138207813583	8.73593959168352	8.25515138709589	8.55676461329482	8.93282200892879	8.29086302294704	0.139629813895346	0.596712621018365	0.880046639147099
Merged-chr13-96593761-4	chr13	96593256	96594256	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	intron (NM_023420, intron 3 of 17)	51021.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	4.82572885996193	4.27546292067954	4.27531883110417	4.53233479218741	4.77122782015787	4.44041103248016	0.244651543370894	0.609551548640239	0.885271548963721
Merged-chr5-92504822-1	chr5	92504322	92505322	+	1000.0	f0_c57.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	835.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	8.66108694924923	8.61279181411553	8.53282716276343	8.46740208902353	8.31863213893248	8.50355619179259	-0.244158300808443	0.22896964112525	0.624413538894527
Merged-chr8-105805354-2	chr8	105804854	105805854	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145824, intron 3 of 13)	intron (NM_145824, intron 3 of 13)	21996.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	3.51936489767825	3.55773398796504	3.8344635714308	3.64669006488747	3.16425736350126	3.60814113958992	-0.54466677350704	0.382689121679289	0.764125175224222
Merged-chr14-54770588-4	chr14	54770063	54771063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	11323.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.76901753636693	6.65053468616041	6.70613009582192	7.3245206431702	7.583808446655	7.0761721950842	0.98098967774235	0.000186514305111777	0.00472879588732603
Merged-chr11-29871582-3	chr11	29871078	29872078	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-45910.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.90970477329708	4.74659494191283	4.91075775834832	4.31907546814681	4.5952090241604	4.68104276849041	-0.745302799283167	0.0759239701761463	0.362681290436862
Merged-chr1-59895592-4	chr1	59895088	59896088	+	911.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17418.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.95495192744523	3.78903353448879	3.89605296347146	3.76735822383887	3.56621049272786	4.01161175401644	-0.312577415574107	0.564723869703749	0.866552552710737
Merged-chr4-16102219-4	chr4	16101731	16102731	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61412.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	5.99681794890053	5.967458854044	6.12871140744903	5.98253858321005	5.72587959356567	5.82282135653296	-0.320555740327672	0.287092291173539	0.684323804399215
Merged-chr18-6491114-1	chr18	6490614	6491614	+	1000.0	f0_balb.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	-257.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	7.54409381383636	8.14574872806057	7.87282981871186	7.74916645103601	7.76431155303242	7.80770342444365	-0.154209938450182	0.542294315267624	0.857067349203709
Merged-chr13-44819555-3	chr13	44819027	44820027	+	857.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	88256.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.98734111852161	2.85044315325335	3.10795891634106	2.99338048422689	2.99564624734589	2.75143755618677	-0.277510177191665	0.697494154527885	0.919997045367387
Merged-chr11-63014850-4	chr11	63014352	63015352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-10718.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	5.43115055439451	4.61050245362823	5.27499394239157	5.40447454648521	5.21670455237422	5.33858586685448	0.336181446857147	0.427499675833971	0.794365779350231
Merged-chr11-4638312-1	chr11	4637812	4638812	+	610.0	f1_c57bl6.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	519.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	6.72076944903871	6.90346919315688	6.57905100102942	6.9249638121757	7.07379601602005	6.46962734697169	0.175597296700588	0.547006586318536	0.859168905101902
Merged-chr5-34534085-4	chr5	34533580	34534580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	8296.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.35736319616566	6.6109084748748	6.74238354823313	6.36385087060317	6.52261899437574	6.67952844066338	-0.0796825277754948	0.776690961590598	0.944890351789015
Merged-chr9-123940833-4	chr9	123940329	123941329	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	27863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.09330656966286	5.74030589248089	6.03816901300649	5.6980090035367	5.5924630793754	5.82394966912796	-0.474813165577107	0.136130170248129	0.493083719571929
Merged-chr14-64330625-4	chr14	64330126	64331126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 1 of 4)	L1MD|LINE|L1	86330.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	5.87145719320366	5.91378032956199	5.91692125253298	5.44845789557055	5.38264134643835	5.71077686587522	-0.720584894750695	0.0235044812319593	0.17974091299962
Merged-chr2-50789437-5	chr2	50788991	50789991	+	761.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120193.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.91263519489129	6.12812679557816	5.99946812518292	5.98336313211883	6.2892868313174	6.14903681957513	0.228192223355173	0.442428684441245	0.803210813434975
Merged-chr4-129832490-2	chr4	129831929	129832929	+	688.25	f0_balb.idr|f1_balb.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	11721.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.42799382060951	5.7202438188295	5.36752497090196	5.63868772254965	5.95553377979764	5.64240868116261	0.442891152527461	0.194834641551365	0.582478818292114
Merged-chr2-124607948-3	chr2	124607502	124608502	+	680.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-2294.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.60593932397177	4.30495125910036	4.53244452337466	4.54811617640291	4.29605129123983	4.71465572238055	0.0862500320469663	0.848309192375573	0.964356989789491
Merged-chr8-125543341-3	chr8	125542802	125543802	+	993.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	26561.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.88003791696429	4.47311172644675	4.34454701062938	3.84842919166875	3.33840343800715	3.97972045718131	-2.554764389994	2.74224992788369e-05	0.000955115663454776
Merged-chr18-3336122-2	chr18	3335622	3336622	+	853.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033457)	promoter-TSS (NR_033457)	-294.0	NR_033457	633947.0	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	5.96131652897164	6.04772085559041	5.61554477836211	5.96267254279481	6.23973470692783	6.13231161579978	0.377201539658243	0.231064125548183	0.626838281123279
Merged-chr8-35709164-2	chr8	35708616	35709616	+	612.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	117443.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.37919695127097	2.09681601502454	2.18886298244214	2.46787659965575	2.23291190232161	2.46507344840222	1.07442901324893	0.232802957837521	1
Merged-chr18-10531790-4	chr18	10531290	10532290	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	78562.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	5.45279085901588	6.01083675972849	5.19083428162985	6.1494951701615	6.48921466421717	5.86293005224312	1.02356398730955	0.00993361954972282	0.100002471353469
Merged-chr1-170863243-3	chr1	170862757	170863757	+	845.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 1 of 15)	L2|LINE|L2	4514.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	4.1046834229584	3.8202478479414	3.7805611563632	4.04762707680991	3.47901548474895	3.62985720006503	-0.537809931903846	0.35771731873218	0.744272420910863
Merged-chr19-6127047-4	chr19	6126662	6127662	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	1053.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	6.44765137491863	6.73813343305562	6.2850640161575	6.8051497703219	7.22543500130216	6.60045311868177	0.630524534432422	0.0411062726099195	0.253042149243632
Merged-chr9-35110089-3	chr9	35109605	35110605	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-6623.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.48581659837826	3.30879111592887	3.76769671477441	3.86724927462667	3.47685931797874	3.63456708904725	0.493356048558834	0.411917435492944	0.784137658017569
Merged-chr4-43925802-4	chr4	43925234	43926234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 12 of 20)	intron (NM_016678, intron 12 of 20)	-31968.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	4.55683547350313	4.16125769502268	4.16764861107068	4.37661469416256	4.42351780719871	4.46457729973597	0.270918455842628	0.560326947919006	0.865206445804495
Merged-chr1-36446429-7	chr1	36445934	36446934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1163.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	6.14606553617777	6.07948179894272	6.33151405554457	6.41853980045636	6.42598286524885	6.18971861786075	0.291553239432108	0.303299221069763	0.699902971652469
Merged-chr5-123133574-4	chr5	123133047	123134047	+	922.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	-918.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	4.22541521068772	3.59596349970777	3.96798992524684	3.66937445865218	3.7239019631222	3.62212713695044	-0.899856164658814	0.118495285263891	0.459921210483695
Merged-chr5-67972748-3	chr5	67972245	67973245	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256184, intron 2 of 3)	intron (NM_001256184, intron 2 of 3)	-29664.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	3.17512934365981	3.22030594384653	3.40029276216563	3.08349758442181	2.86253266301143	2.95782452525912	-1.34280848013834	0.0486580696051879	0.280023280023011
Merged-chr7-141048028-1	chr7	141047528	141048528	+	715.5	f0_balb.idr	Intergenic	Intergenic	-13246.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	4.39160658348242	4.39795350766156	4.6196831848696	4.30688540460734	4.03988067580651	4.60983552958528	-0.366957345071535	0.441870353035692	0.802999352423289
Merged-chr12-12226573-1	chr12	12226073	12227073	+	580.5	f1_balb.idr	Intergenic	Intergenic	-35566.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.65119073516874	5.53109620347581	5.15706783186804	5.54025184532935	5.73879944007417	5.32880489558625	0.156488960599432	0.666625055154962	0.9082780021178
Merged-chr15-77929033-4	chr15	77928515	77929515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019913)	promoter-TSS (NM_019913)	-21.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	6.41003964206175	6.52338333745622	6.57822217995086	6.70787703946831	6.61922455673126	7.03838743096039	0.45735406114869	0.0956736708425453	0.412391981116168
Merged-chr12-71000503-2	chr12	71000003	71001003	+	815.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	B1_Mur1|SINE|Alu	15320.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	5.84671820689488	5.85248414153438	6.3338269642182	6.57211324458538	6.82585150992706	6.7283819807636	1.15029123894185	0.00012015736353623	0.00331171046873887
Merged-chr7-99377645-4	chr7	99377147	99378147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3871.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	7.11923042232273	7.11025986729167	6.8799329577742	7.06029397677404	7.43331865869051	6.9822108683167	0.208234648253037	0.433891647318835	0.798056017818821
Merged-chr14-25739390-2	chr14	25738890	25739890	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	29466.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	2.85971233370801	2.99645247421231	2.95115537974977	2.75988300649003	2.51587817200387	2.84449367891999	-1.2149751788662	0.111433045001664	0.44590366492731
Merged-chr11-77687384-6	chr11	77686867	77687867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	CpG	1228.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	7.76608146208906	7.75830684818216	7.874047318198	7.7556618951894	7.76303139867083	7.9904117755356	0.0549051972159499	0.803477594620556	0.953504424667369
Merged-chr3-89727246-4	chr3	89726756	89727756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	-3462.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	3.22832869155629	3.25153281646695	3.16567465324716	3.29094149394063	3.1337682343339	3.29565467407929	0.0823316990005644	0.895114121894874	0.975651613572988
Merged-chr15-99125386-2	chr15	99124886	99125886	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	3.61656160926714	3.40452799424931	3.55317413207667	3.3296272462691	3.33134637899902	3.4068140619569	-0.656797151545713	0.265601774795395	0.663370628160746
Merged-chr14-103762497-4	chr14	103762003	103763003	+	717.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63071.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	3.49000855195718	3.46533150200675	3.33642634321052	3.1796590747124	3.08204119706094	3.23483028774167	-1.13617432405487	0.0690967131249036	0.34395473619309
Merged-chr17-35667082-2	chr17	35666582	35667582	+	799.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010364)	TTS (NM_010364)	510.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	5.26501927666896	5.51550259416715	5.29253759436046	5.21036246976574	5.23741552102777	5.29276388258553	-0.244954856189755	0.480801304278732	0.824825576282389
Merged-chr6-82824023-1	chr6	82823523	82824523	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-49569.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.10343165280457	6.1010711965288	6.39166783106045	6.49800140802788	6.37672554931326	6.19515670187111	0.286246592079098	0.32101558567914	0.714680187400013
Merged-chr2-150850824-2	chr2	150850324	150851324	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8254.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	7.29173400294293	7.39138345454858	6.59598553554113	6.73537601511854	7.07321965708312	6.39737134705726	-0.566150138115154	0.0929855540395102	0.406298481359007
Merged-chr3-135825297-1	chr3	135824797	135825797	+	1000.0	f0_balb.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	18.0	NM_026228	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	5.97447159134787	6.26629483164545	6.16658834365642	5.97049737411604	5.84282394425855	5.64103415766111	-0.537189731305236	0.0819901222520385	0.378718446338826
Merged-chr4-147421524-2	chr4	147421024	147422024	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-131753.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	4.03084166725305	4.18718375527874	4.20269542014579	3.93157874152542	3.97034022168204	4.47375437528165	-0.00823285679420428	0.98714173797048	0.997161899445921
Merged-chr11-32565356-4	chr11	32564855	32565855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	32089.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.64774460890202	6.47091429621856	6.70821330537251	6.56922223541507	6.67039268764146	6.36401364766223	-0.0913199698202818	0.736665064661248	0.933222784298367
Merged-chr19-32770095-3	chr19	32769597	32770597	+	894.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	12520.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.86572522577852	5.07536557280994	4.97650667814755	5.10454404584852	5.02499759468605	4.81384037326789	0.037939797379468	0.920792285411176	0.982463724790289
Merged-chr2-131076893-2	chr2	131076393	131077393	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 10 of 20)	intron (NM_011426, intron 10 of 20)	9872.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	3.20932840183055	3.51293168256694	3.51318097795358	3.34489481100403	3.69332524467854	3.87826004535183	0.839656089790956	0.176851742788871	0.557467887031723
Merged-chr16-35913755-2	chr16	35913255	35914255	+	739.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-24715.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	2.93958804069049	2.82916824234595	3.10675569848013	3.16429125401763	2.8391121069926	3.17856415124866	0.488104459853257	0.485862140136068	0.827573679263522
Merged-chr5-124023207-2	chr5	124022699	124023699	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9061.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.0866191709592	6.12476364091082	6.21481953396808	6.45782723033863	6.83268844412988	6.47001471595778	0.770550444770775	0.00690888768777381	0.0773408753833288
Merged-chr7-98717659-3	chr7	98717161	98718161	+	758.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028410, exon 5 of 5)	3' UTR (NM_028410, exon 5 of 5)	14414.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	4.85826626240723	5.06819789735808	4.53008247668669	4.59649006381611	4.40128647028429	4.31521499723279	-0.959100676635668	0.0313047079493512	0.214210702224475
Merged-chr8-106149185-4	chr8	106148666	106149666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	7.98384471386285	8.01377459480751	7.93205435175938	8.0180283337377	8.48061264493512	7.88344579770188	0.262297078806096	0.296350675817895	0.693085082607025
Merged-chr8-19784655-4	chr8	19784194	19785194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	CpG	55118.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	7.67859679775721	7.82295773095625	7.44006490204678	6.95502730269426	6.54373523264647	6.3946479974755	-1.50628035965561	9.08506886271561e-08	6.55637823008535e-06
Merged-chr15-78592926-2	chr15	78592426	78593426	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4121.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	3.08837722631345	2.88306963062604	3.10526683488604	3.13890651213816	2.97320541059329	3.28836120629735	0.474916940224046	0.481188442138962	0.824953741430059
Merged-chr19-36834768-4	chr19	36834276	36835276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163635, intron 1 of 26)	CpG	544.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	8.38196225914686	7.94710590831108	7.71399019872761	8.24294255663701	7.77433334263939	7.44091506493146	-0.258406417297899	0.400100316766319	0.776370587381168
Merged-chr8-36958122-3	chr8	36957578	36958578	+	721.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-5636.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.45877702286356	2.39244175508762	2.48568764255715	2.87522095319219	3.21603937391813	3.01788153541452	4.15599214268657	6.5068026227209e-05	0.00197309778655744
Merged-chr5-29895120-4	chr5	29894627	29895627	+	796.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117987.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	2.74585072042923	2.99744007951262	3.35045971073522	3.31845564414123	3.04476927819414	3.20412501181294	0.608165188637889	0.404799733513073	0.779791650050306
Merged-chr9-96483842-4	chr9	96483346	96484346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5171.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.97385724090816	4.93301241726993	5.42105114962389	5.10884585198014	4.90217286314838	4.79777512925423	-0.362125749081507	0.368825843224594	0.753638793969867
Merged-chr5-92347157-2	chr5	92346657	92347657	+	616.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021274, exon 4 of 4)	3' UTR (NM_021274, exon 4 of 4)	1732.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	2.85058391986363	2.83899180909816	2.7293725834957	2.98710413703708	2.89283004068338	3.32763954701109	1.25810459466013	0.0846125343756827	0.385207624901888
Merged-chr6-49319209-4	chr6	49318717	49319717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175098)	promoter-TSS (NM_175098)	-57.0	NM_175098	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	6.01557795862689	6.18223921133832	5.58848785492931	5.84566388224929	6.01919247346252	5.97274110391793	-0.0315763799057226	0.923164780084111	0.982693984177635
Merged-chr5-64337279-3	chr5	64336776	64337776	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106919.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.05693065514711	7.17344108335801	6.91501918688042	6.38649841172839	7.12151298663611	6.43538904571913	-0.528660146707662	0.0972881144709584	0.415876794186434
Merged-chr1-16231511-6	chr1	16231010	16232010	+	802.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	125628.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	5.34185924778348	5.71705358858694	5.5101268508037	5.27660738287909	5.3710778813379	5.3966388868083	-0.362007488665629	0.293371394192989	0.690262155452762
Merged-chr9-57764500-4	chr9	57763986	57764986	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	CpG	1374.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	7.68659730703115	8.23154785118531	7.73944428647859	7.84216112984408	7.83539440635997	7.97422708482047	-0.04806242442066	0.850200432273461	0.964832895564907
Merged-chr7-34189562-4	chr7	34189065	34190065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 4 of 6)	intron (NM_026549, intron 4 of 6)	7105.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	5.87456364535199	6.21150116175301	6.10377803038103	5.9925663380192	6.05543320331314	6.14293000124063	-0.0153442050084946	0.958894716740075	0.990174309444982
Merged-chr3-88407933-2	chr3	88407433	88408433	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	RSINE1|SINE|B4	2464.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	3.45454962679937	3.2171146345705	3.1229584394397	3.26953600863076	3.12589168210756	3.3141260089931	-0.176165047763054	0.783499290202775	0.947225267514266
Merged-chr9-110710815-3	chr9	110710312	110711312	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 5 of 6)	intron (NM_028312, intron 5 of 6)	31798.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	6.26185934140671	6.33165575596533	6.4340697988028	6.86147367463776	6.9681355867202	6.74847526726565	0.843082194018023	0.00119242296976405	0.0206577410926769
Merged-chr18-56756820-2	chr18	56756320	56757320	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49007.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	6.55728341623894	7.01129394850485	6.50827413503514	6.55402188508456	6.81151423590503	6.43544488440875	-0.161730909842687	0.588475498625191	0.87650352259205
Merged-chr15-81870922-1	chr15	81870422	81871422	+	593.0	f1_c57bl6.idr	intron (NM_026737, intron 2 of 3)	intron (NM_026737, intron 2 of 3)	970.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	4.18320367161624	4.24302104243631	4.35072327874922	4.20148982465707	4.08500890952445	4.28865577797901	-0.190141015944055	0.681204712272532	0.914599647187446
Merged-chr19-53333297-2	chr19	53332797	53333797	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	2889.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	5.70610496593678	5.94514620916414	5.97107292352485	5.69349139087117	5.72229181432911	5.89426306826675	-0.195236834199763	0.530486729969783	0.851184770475639
Merged-chr3-79567390-4	chr3	79566908	79567908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152118)	promoter-TSS (NR_152118)	271.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	7.90905775646748	7.97656970660715	7.64171878086036	7.74874625961465	7.54474185424212	7.34053834627967	-0.426360576548069	0.0821802067927987	0.379123019025808
Merged-chr1-166002817-4	chr1	166002301	166003301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-167.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	6.40551058188436	6.94812132569669	6.62133803999062	6.62703160998215	6.6854408342999	6.23943874721447	-0.222784273574122	0.46697375379686	0.817728681977829
Merged-chr18-80163914-4	chr18	80163407	80164407	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12425.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	3.97764492212817	3.92332138541533	3.87249042821725	3.87654115933117	3.92585224951174	4.03923874264514	0.0528788822182629	0.915801584673801	0.981200822249461
Merged-chr11-94391034-3	chr11	94390605	94391605	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	1871.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.53957859363092	6.79139828416355	6.68794345359454	6.4322232434244	6.86382511157087	6.26621140754465	-0.181944790612177	0.54508993331855	0.858019423019685
Merged-chr11-60540189-2	chr11	60539689	60540689	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172943, intron 1 of 3)	intron (NM_172943, intron 1 of 3)	2506.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	4.42284121835543	4.39957713727399	4.59343147387236	4.89145165220928	4.82531117793814	4.44324457748743	0.665044236642392	0.123929124104595	0.471163965936907
Merged-chr17-84268750-4	chr17	84268263	84269263	+	837.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80816.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.25786288908394	6.06333606156737	5.68446642221652	5.86183767020346	6.15250250170812	6.05369506343656	-0.00851000728580105	0.979110947316838	0.995161162196021
Merged-chr9-70207271-4	chr9	70206758	70207758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181072)	promoter-TSS (NM_181072)	-92.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	4.76039727265918	5.18217741422058	4.95230948708133	4.16971865201981	4.21549252826513	4.61013652596221	-1.56303922034264	0.000535183429773488	0.0110719897624546
Merged-chr15-103333419-4	chr15	103332914	103333914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	924.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.8717189669318	5.83477377605854	6.54917426326963	6.20442256731853	6.09982976214817	6.30101749102001	0.143121134468489	0.674333765844714	0.911841916826811
Merged-chr12-111538066-4	chr12	111537576	111538576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-25.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	9.03509329154207	8.83572104560846	8.44404811081116	8.74035050765241	8.58008732685898	8.52188675753503	-0.25101306968266	0.295007609721644	0.691951886954716
Merged-chr3-51561235-4	chr3	51560746	51561746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-423.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	7.56511150970181	7.77272679217707	7.12428439429094	7.24849862843456	7.47498075456292	7.12882488169598	-0.332185542885311	0.231032470367626	0.626813326547916
Merged-chr2-120100769-2	chr2	120100269	120101269	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53806.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.71601760845604	6.97084317958356	7.02969610370785	6.97887943227153	7.22961719326677	6.95268026662277	0.242756327089534	0.349827445246809	0.737856579571521
Merged-chr8-77435203-4	chr8	77434712	77435712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-81844.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	4.10712536440712	3.58468113492766	3.59268128579037	3.62624231695034	3.4354919495523	3.43159594541664	-0.997779617939796	0.099118553760118	0.419760617939327
Merged-chr5-66062589-4	chr5	66062112	66063112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	35567.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.55512905245993	6.45612779011725	5.89188924771275	6.30703765823257	6.50388111416441	6.305093319042	0.0537665167064363	0.865100771818188	0.96857203435794
Merged-chr7-29816034-4	chr7	29815532	29816532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-40.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	6.52638347304163	6.77266898027187	6.6666833170128	6.62377336270659	6.72012723567642	6.66049463288182	0.0171164674568532	0.947344259064921	0.988008807662239
Merged-chr18-37954241-2	chr18	37953741	37954741	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010411, intron 2 of 14)	intron (NM_010411, intron 2 of 14)	747.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	4.11865329910662	4.3901822312456	4.67770333066455	4.38225119655891	3.99670139696294	4.35307052122521	-0.416775050158149	0.401971895192292	0.777825572781104
Merged-chr8-106416915-3	chr8	106416424	106417424	+	644.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	1585.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	5.38377126164672	5.45672932689067	5.45619507249312	5.36999433225116	5.73368669111648	5.57616742856269	0.273836903902045	0.41561277480286	0.78656116488557
Merged-chr5-103725907-4	chr5	103725365	103726365	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28297.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.53947044661849	4.47257158564241	4.35808651612459	5.14196481528803	5.33610683355661	5.05087289463085	1.63708860540282	5.37373407964791e-05	0.00167789331818246
Merged-chr2-68465695-3	chr2	68465216	68466216	+	821.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	6265.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.08219420589723	4.06804283402444	4.08683924790676	4.15043666305867	4.1463949817302	4.05894935130685	0.125897909765373	0.79021800302643	0.949368241827272
Merged-chr11-86807763-4	chr11	86807289	86808289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026191)	promoter-TSS (NM_026191)	-129.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	7.23530870487848	7.23672288371608	7.02798572019735	6.98433734472985	7.21457075404179	7.00395377022619	-0.147608025551779	0.548903138210048	0.860071455679488
Merged-chr10-17656060-1	chr10	17655560	17656560	+	706.666687	f0_balb.idr	Intergenic	Intergenic	-67168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.89776896281855	5.05606094442635	4.72318482682975	4.80098972555228	5.17273764159139	4.98359801603935	0.202194718500016	0.612431203110586	0.886724591491511
Merged-chr12-69185493-3	chr12	69184995	69185995	+	684.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1337.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	5.1257155681737	4.94772255547544	5.18039264457304	4.87659449217394	4.54306922772264	4.94586338161803	-0.652638504538137	0.102504482551084	0.426993390944211
Merged-chr16-84985586-1	chr16	84985086	84986086	+	747.0	f0_balb.idr	intron (NM_001198825, intron 12 of 15)	ORR1E|LTR|ERVL-MaLR	13375.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	2.98069354171925	2.96205682699024	3.22358432503864	3.09277815487146	2.78994163060092	3.07073829624817	-0.314232567009008	0.651838892016074	0.902896807825606
Merged-chr16-32161119-2	chr16	32160619	32161619	+	731.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	4475.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	5.12266666733922	5.19849320954839	5.46196603436965	5.56460286281273	5.37329608363488	5.65784216479057	0.530197283726936	0.12999270439883	0.482195010397444
Merged-chr6-83078481-6	chr6	83077993	83078993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197992, intron 1 of 8)	CpG	103.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	6.75108310290053	6.69671394673592	6.73311932421965	6.64041473175001	6.17546466566204	6.58315661000828	-0.404391403394301	0.151104936679793	0.518458602583489
Merged-chr6-88902287-4	chr6	88901779	88902779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	28.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	8.25588920112757	8.95540061826288	8.52876686508843	8.43483199620787	8.88785504873915	8.05536904221663	-0.143376483942891	0.636784982788136	0.89723915288953
Merged-chr1-13589400-4	chr1	13588897	13589897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028173, intron 1 of 10)	CpG	513.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	8.3177379624268	8.05353635823805	7.93550552042993	8.16934119799873	7.97502044498093	8.0738552274854	-0.0614308091467801	0.7878130127386	0.94877064431094
Merged-chr9-45911907-3	chr9	45911454	45912454	+	817.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104055, intron 5 of 17)	intron (NR_104055, intron 5 of 17)	-5043.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	3.54447296438899	3.40406021668731	3.55741583473936	3.46534772643049	3.53214044197699	3.57465913445108	0.0828609274932678	0.884282732083442	0.973466734537782
Merged-chr17-27821538-2	chr17	27821020	27822020	+	870.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-978.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	7.60458825518934	7.65442132790878	7.49523666110882	7.33618731993309	7.62252809023585	7.16242906653966	-0.277589469622327	0.263918662879518	0.661879105198449
Merged-chr8-85840752-4	chr8	85840267	85841267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199446)	promoter-TSS (NM_199446)	182.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	7.46831328555187	7.93005062129139	7.75586305162925	7.79704290364582	7.57564169537848	7.50515073148613	-0.144171897845915	0.564967225142168	0.866552670637515
Merged-chr4-136141166-3	chr4	136140668	136141668	+	934.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2654.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.29291460329967	8.27666666183175	8.02582401168239	8.29269913827056	8.63665887700382	8.15415561342971	0.246945837576666	0.303793613548504	0.700294220341559
Merged-chr8-26979204-4	chr8	26978716	26979716	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1880.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.09912522433596	6.2953777249444	6.61238490347631	6.2443098664193	6.28274600054976	6.4937217893473	-0.00532873678325785	0.985811441884913	0.996966634617303
Merged-chr10-62340326-4	chr10	62339835	62340835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038038)	promoter-TSS (NR_038038)	86.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	7.11046037622394	7.06011752621056	7.00750333168597	7.11326585072899	7.04219420944044	6.81855402339731	-0.0882133768723572	0.719815999474223	0.927960661644538
Merged-chr5-100505991-3	chr5	100505484	100506484	+	782.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5345.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	4.29255823080661	3.86667593833646	4.26799995284025	4.38024704369464	4.52055320002911	4.04575234251308	0.500864465580791	0.3252722112898	0.718077478450679
Merged-chr10-7045839-4	chr10	7045339	7046339	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-22654.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	2.74427385794884	2.86869296313568	2.83779145793743	2.50437714518916	2.72969161621063	2.85066753663192	-0.614045748582019	0.421215033299759	0.79018977948291
Merged-chr4-140701947-4	chr4	140701450	140702450	+	965.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173867, intron 1 of 12)	CpG	477.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	6.6325076633753	6.41092814632319	7.05623271709173	7.05199376689444	6.63922633470869	6.52313579201518	0.0666338892896678	0.832848977390512	0.960814376378972
Merged-chr19-55662331-1	chr19	55661831	55662831	+	640.0	f0_balb.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	39873.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.09624475318533	3.07652732957757	3.29350081032728	3.25131458098014	3.01596381628131	3.30992984671315	0.164908474034908	0.799989180404206	0.952400567323345
Merged-chr7-101903611-2	chr7	101903111	101904111	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	174.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	3.82859066131627	3.66122180806537	3.78558524477871	3.72090953704167	3.99952577774127	3.90535360018384	0.399366229602723	0.450008105652718	0.808103298842183
Merged-chr12-91763984-3	chr12	91763489	91764489	+	969.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B1_Mur3|SINE|Alu	22447.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.41530904796665	7.49575838827232	7.42121163836055	7.64017654190857	7.63263738181619	7.57903890500018	0.252957148749466	0.248880127111121	0.645858832854983
Merged-chr16-8738078-6	chr16	8737570	8738570	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003918, intron 1 of 30)	CpG	272.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	5.87558287692354	6.29495528502396	5.95687600043018	5.74285628322437	5.63153959749463	6.10578269953817	-0.405267430551977	0.223535271655365	0.618266283868488
Merged-chr1-88095082-4	chr1	88094596	88095596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	95.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	7.09908929168751	7.5193149369677	7.49777503890572	6.75618481166139	7.12471837230845	7.06724397232371	-0.584210323998488	0.0307210095189871	0.211924536565733
Merged-chr7-30091411-3	chr7	30090881	30091881	+	778.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-871.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	4.68754384358308	4.61630014269345	5.22708319225388	4.86695739100001	5.46754326770575	5.2296015150633	0.754173714299593	0.0840115473869374	0.383661081936741
Merged-chr8-116943395-4	chr8	116942907	116943907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177700)	promoter-TSS (NM_177700)	14.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	6.67350681081568	6.71423649121822	6.45274115982096	6.45240408446528	6.20657663958157	6.29826381231655	-0.494606725916534	0.0714124947775857	0.350618370922116
Merged-chr2-58566689-4	chr2	58566078	58567078	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289660)	promoter-TSS (NM_001289660)	250.0	NM_001110205	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	3.7467343629087	4.12201026148054	4.112222890195	3.83985327320653	3.63046753586593	4.17939925706881	-0.331883318705532	0.550370638360466	0.860699816966477
Merged-chr5-108566730-3	chr5	108566222	108567222	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16695.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	3.24929247343486	3.16383348379503	3.38060750757875	3.11516615059493	2.990414924408	3.39825206110608	-0.389944851375453	0.552195548215396	0.861546661145201
Merged-chr3-98025698-4	chr3	98025190	98026190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12152.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	8.58888940644903	8.85744152740799	8.2005638147646	8.15353223190288	8.5474635215422	8.22872491615127	-0.361736206774967	0.168995305420226	0.545635945763902
Merged-chr4-132803018-2	chr4	132802518	132803518	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6654.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.05607736689697	6.05779391282418	6.11399706221436	6.16148032235562	6.66345675786296	6.33919502800292	0.569285600806694	0.0572586001416931	0.308653381743327
Merged-chr1-135747570-2	chr1	135747070	135748070	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360782, intron 4 of 5)	B2_Mm2|SINE|B2	18403.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.51432083720283	5.24444542947166	5.36432125904553	5.62849935488243	5.53953643362524	5.68289229555689	0.445682591353936	0.180887637340132	0.563044236413202
Merged-chr19-55686820-1	chr19	55686320	55687320	+	995.0	f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	15384.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.65405273580015	3.42709584905852	3.28786590498976	3.89682306957362	3.57127099704276	3.95728885673006	1.17240484922329	0.0541336502154728	0.298677326909957
Merged-chr4-148088959-2	chr4	148088459	148089459	+	791.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	-895.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	3.47227932710068	3.67822761207115	4.06602912179391	3.79002377934305	3.76978329824724	4.08983404954989	0.419273049051999	0.466145894884675	0.817366049302902
Merged-chr6-140627358-2	chr6	140626858	140627858	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309436, intron 1 of 8)	RSINE1|SINE|B4	473.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	2.85276251877614	2.83874162169917	2.83111247035555	2.90855996087252	2.9090776514097	3.0233482632822	0.509913507989357	0.459493534677449	0.813687282570895
Merged-chr4-139166416-4	chr4	139165923	139166923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	14232.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	7.05135446865929	6.92727177095056	6.78195961954882	6.81998087609994	6.87718864002693	6.8096910786159	-0.143834343709957	0.564473111198136	0.866404948010081
Merged-chr2-164462092-2	chr2	164461592	164462592	+	706.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025575, intron 2 of 3)	intron (NM_025575, intron 2 of 3)	1121.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	4.69171042844886	4.82568717808661	4.82685575728024	4.97752310245193	4.6158388025294	4.77858984867131	0.0320015636444148	0.937037527635813	0.986037792257163
Merged-chr12-77060218-4	chr12	77059730	77060730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97982.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	6.93065984896355	7.25461062441845	6.89507540307303	6.86578570721142	6.98907967367951	6.95336395498443	-0.162321244876182	0.528265636138635	0.850495873730805
Merged-chr12-79131603-2	chr12	79131103	79132103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 1 of 7)	intron (NM_009705, intron 1 of 7)	815.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	7.96705573236262	8.14716890932763	7.97938334972484	6.11908614318502	6.2338855869781	6.61826495267965	-2.59336366123069	2.8079801688824e-23	3.54009718018738e-20
Merged-chr4-128924373-4	chr4	128923888	128924888	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38067.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	3.21435625990696	3.10251084464258	3.36576358351891	3.44812571919159	3.38795378459587	3.49047608383422	0.859744473505487	0.159968353579629	0.532501868349568
Merged-chr13-101841440-4	chr13	101840936	101841936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73219.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.9206137391352	6.98936519518213	7.02511013311083	7.2493613521381	7.41776224956906	7.05632609159748	0.425221577081353	0.0851046405070447	0.386252608791229
Merged-chr9-41207630-4	chr9	41207119	41208119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1464.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	7.2984798593423	7.8090792440467	7.10005588607988	7.4761818109954	7.95015675718927	7.40470468840315	0.281764661124357	0.354083963353567	0.741235242596448
Merged-chr14-46915704-4	chr14	46915200	46916200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	32735.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.96974512607535	7.31438929221223	6.90445329491568	6.62518414467081	6.85152458636343	6.92002032351212	-0.429200921585224	0.11167735987709	0.446344673646809
Merged-chr12-85781853-4	chr12	85781355	85782355	+	823.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	35316.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	3.2195692159769	3.10160844179219	3.73276553845976	2.95025650779372	2.82798860923114	2.9653817121169	-2.07222732779206	0.00493120393040662	0.0606706515808478
Merged-chr10-19044070-4	chr10	19043584	19044584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-28674.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.42678865926937	6.34623953843182	6.66362221796249	6.50142657449255	6.58557649573263	6.6911790197743	0.185659715282224	0.492908157810601	0.831208279358962
Merged-chr13-47251306-4	chr13	47250808	47251808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	57305.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.7672341828106	4.45428512670615	4.75280635009705	4.12226959700565	4.39297616143614	4.46728628434013	-0.821735089448672	0.0701366712717255	0.346798915092568
Merged-chr2-73541048-4	chr2	73540533	73541533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11546.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.88018713201676	6.97232466506267	6.61105321696858	6.83434123739503	7.13029160195866	6.46434654616966	0.0242747591851507	0.935214469012307	0.985828082719874
Merged-chr14-50830110-4	chr14	50829600	50830600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 45 of 54)	G-rich|Low_complexity|Low_complexity	22184.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.47898753741412	4.69032671957412	4.82238002412587	5.3348968086103	5.39840650946994	5.10812238312888	1.37118671957576	0.000413898688009481	0.00903691472891444
Merged-chr10-57714445-4	chr10	57713970	57714970	+	801.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	63489.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.19786763760723	3.94511677893054	3.89104843173927	4.21807434957036	4.44593962901839	3.96323950405038	0.593406655008357	0.248690352771251	0.645819769301048
Merged-chr4-116777245-3	chr4	116776733	116777733	+	986.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	L2|LINE|L2	30326.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	2.71783493039263	2.70203932377488	2.77496849576126	2.77923441606012	2.59498288469928	2.5269760094726	-0.496280932045098	0.514516121706659	1
Merged-chr2-75737409-4	chr2	75736889	75737889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32726.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	3.77875913618987	3.74914664052763	3.5108342149465	3.72813420352916	3.41471007502253	3.84677849429253	-0.0750831792806037	0.897207907979522	0.975963394862323
Merged-chr1-24686425-4	chr1	24685938	24686938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 2 of 15)	MIR|SINE|MIR	7520.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	6.27486508494574	6.33429346474969	6.09461437705777	6.15039192252581	6.26958617172383	6.3024365840609	-0.00886834332982903	0.974809944530436	0.994379842575515
Merged-chr6-53612265-4	chr6	53611764	53612764	+	873.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 7 of 10)	intron (NM_001327821, intron 7 of 10)	38890.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.36749229066814	4.30069823503413	4.39467568252966	4.28283259793444	4.31473824316861	4.46116452011837	-0.00669401707954437	0.987927389904712	0.997263854458883
Merged-chr2-167631293-4	chr2	167630864	167631864	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311131, intron 1 of 4)	CpG	641.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	7.02864418272477	7.05681338716812	7.25224563105872	7.03349747030365	6.7873517034906	7.09781929689984	-0.211468577339047	0.403551352941108	0.778882003719199
Merged-chr13-56616554-4	chr13	56616070	56617070	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	6984.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.52455991613688	4.39582288693263	4.67270368861378	4.29211750470507	4.13951942483021	4.50725011509449	-0.566710515559204	0.212218520910273	0.604612211832013
Merged-chr15-79209251-4	chr15	79208719	79209719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029470, intron 2 of 4)	intron (NR_029470, intron 2 of 4)	-19954.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	7.10559772213329	6.92770008673689	6.87438703165084	6.64673718789498	6.35640247333373	6.10069529563578	-0.913847458945158	0.00143195551460518	0.0238730022959864
Merged-chr5-120775472-4	chr5	120774966	120775966	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	2193.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	5.31535347731734	5.7904265811062	5.53342383476472	5.29172098249316	5.36511487888816	4.97138907946985	-0.65925472002869	0.0805454053652822	0.375547578708641
Merged-chr5-66143018-1	chr5	66142518	66143518	+	866.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	B2_Mm2|SINE|B2	7960.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.21650619875873	4.40840826375331	4.59609682688267	4.97652021937796	5.12256151996885	5.09960140906802	1.55217607479429	0.000176078690503685	0.00451638584446074
Merged-chr9-118557054-3	chr9	118556561	118557561	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018748, exon 15 of 24)	exon (NM_018748, exon 15 of 24)	-49648.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.94678346825956	5.0192028073782	4.60197360144224	4.06665403050827	3.82282227054985	4.05587623878233	-2.43104683068819	4.87688517008274e-07	2.87390836566745e-05
Merged-chr3-133310552-3	chr3	133310059	133311059	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293641, intron 1 of 11)	CpG	449.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	7.12652042253082	6.76381392342416	6.89947306847436	7.28982166062196	6.78215304372859	6.8699064243682	0.0931142224805103	0.742735563774351	0.935362285201763
Merged-chr4-33265442-4	chr4	33264890	33265890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-16603.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.39176736417785	4.28500942551658	4.53663135419913	4.20121579739152	4.28324567037351	4.26547553786086	-0.39771560715601	0.378276509823327	0.760611662785254
Merged-chr13-101764229-2	chr13	101763729	101764729	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	3988.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.88738566297321	3.76315662789633	4.03306054277678	4.31639528616907	4.35781001766772	4.6448845444077	1.55965884684128	0.00151556735477705	0.024897794364519
Merged-chr11-98954734-4	chr11	98954240	98955240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5731.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.2305359267364	5.69683945190437	6.17204888001895	6.38389298734412	5.96239520692575	6.29180184248417	0.286301060318787	0.387116086038479	0.767462183104757
Merged-chr8-109779414-6	chr8	109778892	109779892	+	996.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	809.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	8.71749583804419	9.14505314164105	8.65919563350865	8.78807229185031	9.00980364573156	8.88363347012396	0.0463766770104936	0.842405312630167	0.963021575063938
Merged-chr9-119338526-2	chr9	119338026	119339026	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010851, intron 2 of 5)	intron (NM_010851, intron 2 of 5)	1514.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	2.36461160134681	2.60534135516653	2.77623021200745	2.69092364180152	2.61356803714026	3.01979722864511	1.03280767196019	0.21011175302195	0.602074559520288
Merged-chr11-4260665-4	chr11	4260192	4261192	+	992.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3124.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	4.38410473413424	4.13579768526158	3.90339287252985	3.98936811419096	3.92378741111587	3.97450551608114	-0.593310822885291	0.24286195521538	0.640082910568602
Merged-chr6-71633478-4	chr6	71632974	71633974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-557.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	6.94648314473732	6.77730786204678	7.07908189881254	7.06261168798494	6.94883964332917	6.85048653164685	0.0406162920252951	0.872459599515028	0.970261003150518
Merged-chr11-55028656-4	chr11	55028153	55029153	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	4818.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	5.10059225925012	4.50958664147586	4.33537815246668	4.98967688029411	4.6235197590301	4.59522968858476	0.109433969433234	0.821616723397759	0.958023303204974
Merged-chr12-78350969-4	chr12	78350457	78351457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172952, intron 2 of 23)	LSU-rRNA_Hsa|rRNA|rRNA	124302.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	3.08648939821173	3.03505039391656	3.04848906091597	3.20604430189363	2.91539002122342	3.69811374310072	1.03244420520272	0.149138858012834	0.51537803021029
Merged-chr14-79487469-5	chr14	79486995	79487995	+	799.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6227.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	3.72890943629551	3.75331630632856	3.73078136251681	3.87705400887062	3.72636908996491	3.6392291705219	0.0518564313145656	0.922577005574767	0.982621045978137
Merged-chr9-118795064-2	chr9	118794564	118795564	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	83372.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.06102196689166	3.01672531171557	3.57517794719317	3.24345298231655	3.23282936967879	3.49653646864146	0.360304421931408	0.595236752020735	0.879433674432232
Merged-chr17-83527415-4	chr17	83526916	83527916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13083.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	5.87194773295009	5.88372140165832	6.20077534146723	5.62842244301162	6.07409729480782	5.8944067199643	-0.174330678002966	0.592367667901989	0.878003422897225
Merged-chr15-101255459-2	chr15	101254959	101255959	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11387.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.89093840349077	5.66827150208821	5.86581392011671	6.24079708843944	6.34560254335015	6.29861741139776	0.840869741993503	0.00380617557373913	0.0500797370556113
Merged-chr6-72100020-2	chr6	72099520	72100520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	MTD|LTR|ERVL-MaLR	2412.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.86429905384343	6.51048608090401	6.13457998699013	6.24427034704958	6.26577231459867	6.06065937657561	-0.0103643181942499	0.974464760262431	0.994276686350905
Merged-chr17-31560158-4	chr17	31559666	31560666	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-4607.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	4.50687227410662	4.60117058450806	4.87255573324658	4.57037850500451	4.51673841466565	4.72192634362974	-0.143986744506812	0.733960894303957	0.932325051544019
Merged-chr5-104948107-1	chr5	104947607	104948607	+	752.0	f0_balb.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	34610.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.62279054033456	3.55829615909293	3.69360289668228	3.6231251647819	3.82283877201814	3.43071420183304	0.0798137912834905	0.889467949039169	0.974240173857916
Merged-chr12-40680648-4	chr12	40680106	40681106	+	890.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 12 of 52)	L1MC4|LINE|L1	234553.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.22419715233877	3.88232062291196	4.12494549907706	4.28803312790572	4.00139710457081	3.99898007573439	0.0579268471316244	0.908359271865294	0.979259582109985
Merged-chr19-6952445-4	chr19	6951949	6952949	+	876.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007522)	TTS (NM_007522)	9887.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	6.19680288560908	6.03968426504301	6.76336177334332	5.81582025294293	6.13026974222126	6.73942027918525	-0.138072871843684	0.719602435867167	0.927917795122043
Merged-chr15-27670295-4	chr15	27669802	27670802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	11240.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.65409487303991	7.48670072724999	7.28453438926367	7.26426218798156	7.34895604795877	7.29532319169853	-0.274683951690618	0.250003430919972	0.647199473585621
Merged-chr5-122848758-1	chr5	122848258	122849258	+	586.0	f1_balb.idr	Intergenic	Intergenic	-1430.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	3.54942894165054	3.43417309761747	3.39710582273715	3.56614129347626	3.21204878258529	3.52409925892879	-0.0985487941251943	0.870892333967102	0.970222087171093
Merged-chr13-18795084-4	chr13	18794596	18795596	+	896.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77804.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	5.18174265770373	5.21116609237869	4.92420457782714	5.0248589624715	5.3687780067382	4.74316286526327	-0.062189464276678	0.87941694180592	0.972083703102674
Merged-chr7-83802724-4	chr7	83802225	83803225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7886.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	5.30720064054828	5.02137088169803	5.07057949943898	5.05891105007323	5.21297356350273	5.16938567891084	0.0159502487930838	0.965228868716997	0.991840962282624
Merged-chr11-73321283-3	chr11	73320783	73321783	+	971.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 2 of 5)	RLTR45|LTR|ERVK	3354.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	3.22071938145782	3.08282725261428	3.24151783424424	3.29131449526781	3.09857042625037	3.13936965522706	-0.0115019780528194	0.985626324650055	0.99691465847822
Merged-chr12-69538108-4	chr12	69537548	69538548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44980.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	7.02025004357107	7.00147811018144	6.57560991681076	6.64636846151421	6.50668100757467	6.08880989409754	-0.699759156685892	0.0214424944338581	0.16918140307723
Merged-chr11-94591144-2	chr11	94590644	94591644	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	RLTR20B3|LTR|ERVK	10642.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	4.33686392186485	3.94270851648098	4.09480169357612	4.09485315950321	3.85394114189311	4.3399127618429	-0.101443455246274	0.844706048711005	0.96373428957366
Merged-chr18-4987440-3	chr18	4986953	4987953	+	997.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59136.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	3.59112195448071	3.87221623198573	3.79169352395259	3.58971826937548	3.30919622975975	4.36991195071732	0.261356257243333	0.694806421812326	0.919217788511748
Merged-chr15-76069841-4	chr15	76069334	76070334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134089)	promoter-TSS (NM_134089)	-50.0	NM_001310542	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	6.06591709790698	5.87221834402783	6.14491437589012	6.13772365767129	6.10666516042442	6.32306813543116	0.272823706680027	0.351761239915049	0.739445861272404
Merged-chr7-41499465-4	chr7	41498972	41499972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033530, exon 1 of 4)	5' UTR (NM_001033530, exon 1 of 4)	418.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	5.94125213856838	5.87463252262842	6.07174512839252	6.12829138786168	6.04134432141688	5.90134780230352	0.128106235516242	0.664337953116223	0.907585158243155
Merged-chr10-94537278-4	chr10	94536771	94537771	+	852.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	B2_Mm1t|SINE|B2	-13601.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.77144760810944	4.09128768734084	3.91533150792463	3.83333410987235	3.863896024452	4.07799373624989	-0.0375087571067987	0.942489914979472	0.987202156853573
Merged-chr2-32081507-4	chr2	32081016	32082016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	2189.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	6.78695348402458	6.72256171849031	6.94756838613303	6.97633595047161	7.47925442571109	6.92097196884925	0.527475460235781	0.0609921782730176	0.320009910444621
Merged-chr18-89608790-1	chr18	89608290	89609290	+	540.0	f1_c57bl6.idr	intron (NM_001039173, intron 1 of 7)	intron (NM_001039173, intron 1 of 7)	160346.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	2.36472522992421	2.36808592694709	2.57954484481941	2.50441564421819	2.58430041164889	2.33061981988529	0.275757646295536	0.739998119884009	1
Merged-chr6-134070084-4	chr6	134069582	134070582	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	34382.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.33063267170668	6.43237549158725	6.28709914114092	6.16453643656416	6.4273523588576	6.40476094374876	-0.026905164564838	0.922832842689182	0.982621045978137
Merged-chr11-8597094-4	chr11	8596606	8597606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	67429.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.64181943833586	5.62162967616564	5.48822387885169	5.3040738393269	5.35599909780441	5.27088398740214	-0.532875252918537	0.107253222929625	0.437112977848289
Merged-chr3-135422470-2	chr3	135421970	135422970	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	963.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	7.10627598073243	7.56832165243079	7.21063990208581	7.63158259965917	7.82304091038206	7.36304021815894	0.455279376065393	0.0904293732893112	0.399959990041833
Merged-chr9-123840492-4	chr9	123839988	123840988	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 3 of 17)	intron (NM_001110253, intron 3 of 17)	11173.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	4.15269023044855	4.65459161610991	5.08498639225775	4.61976095189215	4.68096981911203	4.82237685477207	0.0668008435155503	0.891528337787672	0.974819081679788
Merged-chr5-19670044-2	chr5	19669544	19670544	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-237474.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	3.25836140611581	3.35263223260637	3.44874597099225	3.41232741996164	3.50301074572188	3.67348786165851	0.672118109238692	0.255507741820219	0.652637143105991
Merged-chr5-74947874-2	chr5	74947374	74948374	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1320.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	2.40476138182818	2.39388842270783	2.47960159755036	2.31120912002213	2.13608098150825	2.29560576217455	-1.23913284425817	0.152880729537177	1
Merged-chr8-20424315-4	chr8	20423818	20424818	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028428, intron 1 of 5)	CpG	496.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	4.83949260434903	4.91065518918771	4.51126374766293	4.97177738025134	4.70380247019881	4.48752376061857	-0.0750946576460154	0.863051278779371	0.968167003113825
Merged-chr4-156109877-4	chr4	156109376	156110376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145557)	promoter-TSS (NM_145557)	-122.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	5.87340092967816	6.10468608691493	5.88550631106112	6.52570539768731	6.76761525131534	6.44744400694055	1.04554036040266	0.000317008244758772	0.00728782732797213
Merged-chr2-156312587-4	chr2	156312086	156313086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001316755, exon 1 of 10)	exon (NM_001316755, exon 1 of 10)	113.0	NM_001316755	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	8.65331008938739	8.72006189461593	8.40338108676939	8.71288450621379	8.83339350906049	8.71183576299805	0.208627075428998	0.32144062194456	0.714882390432811
Merged-chr6-50075535-3	chr6	50075107	50076107	+	831.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34634.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	3.47911064750755	3.43064267007887	3.45425070443961	2.9448557176976	3.04206163780423	3.12997338401311	-1.82058996855327	0.00598391242811961	0.0696474171658941
Merged-chr6-138095311-4	chr6	138094803	138095803	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15387.0	NM_177787	277898.0	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	3.14919540443684	3.12880673941186	3.29624934310725	2.99448089773414	3.38572271254541	3.52347275267978	0.515804247886525	0.437432025298429	0.799946781486006
Merged-chr11-20146169-2	chr11	20145670	20146670	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	-33219.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.34998351715241	2.42443499004897	2.41917194932967	2.53286654502762	2.5179108391617	2.68228666513889	1.09325487267675	0.172215632198554	1
Merged-chr17-25579952-2	chr17	25579461	25580461	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045520, intron 1 of 8)	intron (NR_045520, intron 1 of 8)	787.0	NR_045520	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	3.92035457158989	3.60194254165859	4.1058047774466	4.05026057239175	3.62256767714699	3.56792366371158	-0.37743558350671	0.520451259041826	0.8464759257692
Merged-chr3-159840298-4	chr3	159839789	159840789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	639.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	5.74798264984457	6.11201570921596	5.71459485730312	5.77150793757467	5.56885778120184	5.48811806612699	-0.474551791765322	0.154036831321761	0.523189511822234
Merged-chr12-100051656-2	chr12	100051156	100052156	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-60675.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.38310097022563	4.27485423817517	4.46421213176676	3.90908695993385	4.07898390397488	4.18978314751028	-0.863442889924316	0.0689631085659112	0.343605323786255
Merged-chr10-8878553-1	chr10	8878053	8879053	+	901.0	f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	7517.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.92978366204099	5.52954789235657	5.9821106110521	5.89304841255724	5.52683370028573	5.93085444128543	-0.0645003309593979	0.850565170664934	0.964981271430729
Merged-chr19-38819263-4	chr19	38818776	38819776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021315)	promoter-TSS (NM_021315)	-39.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	5.85523675499251	5.89654679725593	5.71467694052099	5.8873594959522	5.67376938170954	5.69568816897255	-0.135777009055676	0.661202865737512	0.906299831450979
Merged-chr4-83324289-4	chr4	83323799	83324799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027238)	promoter-TSS (NM_027238)	-110.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	7.35286877935502	7.4190540143371	7.3807350894979	7.44983863007229	7.57746244544324	7.47976646317562	0.178547613574467	0.424288783803542	0.792605206832318
Merged-chr19-46056499-4	chr19	46056032	46057032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081214)	promoter-TSS (NM_001081214)	-7.0	NM_001346801	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	6.86493593885317	7.21014251071095	7.23822979583661	7.02230538352911	6.89420292837675	6.97285421810563	-0.227521026189592	0.374574212542521	0.758106266771134
Merged-chr5-121545991-4	chr5	121545483	121546483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-91.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	7.95129298741214	8.05378618233047	7.90908860375094	7.90392418965469	8.04785407463464	7.71023349721904	-0.103674801969999	0.644358872334976	0.900183224748554
Merged-chr6-66534509-2	chr6	66534017	66535017	+	893.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	-704.0	NM_019499	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	4.08815790682967	4.29888925309223	4.30549749152635	4.42947217776756	4.40515921826415	4.5801701293999	0.620819574097383	0.167892219400802	0.544130536211812
Merged-chr4-59806308-1	chr4	59805808	59806808	+	921.6666869999999	f0_balb.idr	intron (NM_172468, intron 1 of 8)	CpG	658.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	7.34397484782185	7.59661599763597	7.44474466591248	7.35159026387169	7.39581747542729	7.01990863771108	-0.282855357731853	0.256606838355012	0.653682511929703
Merged-chr17-33555597-6	chr17	33555092	33556092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-115.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	6.25978125288532	6.37241399064859	6.24081057771419	6.21915868712398	6.63256009295327	6.52695637250121	0.294428870430541	0.3029026261997	0.699623087323376
Merged-chr16-23383187-3	chr16	23382668	23383668	+	689.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45965.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	3.12336519302367	3.17610994183333	3.02309204169814	3.09179222748913	3.1291886259855	3.21341352009931	0.132531731034948	0.837315294879114	0.962133986386607
Merged-chr13-119444435-3	chr13	119443940	119444940	+	920.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145457, intron 4 of 10)	intron (NM_145457, intron 4 of 10)	15538.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	4.26699951254933	4.60879381959161	4.66737557310505	4.4800685074686	4.41266155017152	4.73239546951261	0.046094384980692	0.918102015203413	0.981747877135909
Merged-chr8-25978694-2	chr8	25978194	25979194	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1950.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	4.75126025958065	4.69741369192733	5.11621116599526	5.15009949609451	5.35875594651825	5.52784534574893	1.04199339734568	0.00715477736836052	0.0794203195392932
Merged-chr8-72281800-4	chr8	72281287	72282287	+	940.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37275.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.04745391624486	3.16882236522197	3.02939023546192	2.89256366021052	2.73951304802728	3.04291278576474	-0.938433668353807	0.181393098720836	0.563710810769873
Merged-chr4-133873839-1	chr4	133873339	133874339	+	608.0	f0_balb.idr	intron (NM_009097, intron 2 of 21)	G-rich|Low_complexity|Low_complexity	892.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.42880970190432	6.90538050286542	6.65059956290247	6.24322819096656	6.46136726933356	6.56086075273513	-0.406730466968504	0.161970595474967	0.535193761745733
Merged-chr14-52104250-4	chr14	52103747	52104747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360176)	promoter-TSS (NM_001360176)	-226.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	7.86055718600907	7.97229687568969	7.78215588316147	7.64871912531609	7.72683644476029	7.53201421768287	-0.33661619319287	0.128564731400959	0.479668086501925
Merged-chr7-141370763-4	chr7	141370263	141371263	+	958.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5653.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	6.92162737420639	7.38655951201879	7.10513852521409	7.21674756280654	7.40163757201917	7.3068493275068	0.233052729704645	0.36709250116763	0.752113401392775
Merged-chr16-44121030-3	chr16	44120568	44121568	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18191.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	7.08972883859995	6.95964608439208	6.7705768678539	7.0357243948996	6.98208113448526	6.49417062584431	-0.125076352918413	0.658352730065926	0.905009317087817
Merged-chr7-96484158-2	chr7	96483658	96484658	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-142194.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	4.99727590342287	5.13951552744276	5.53182936456681	4.20178905622675	3.97157256508749	4.51892884673697	-2.43904609547885	2.65958270328926e-07	1.68415949448473e-05
Merged-chr13-5871538-4	chr13	5871021	5872021	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10032.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.40183833953239	5.67595936612868	5.1968311780153	4.72730276018423	5.04035149527253	4.72415620735861	-1.2321918622376	0.00206725802924117	0.0317313010627773
Merged-chr6-108214734-4	chr6	108214239	108215239	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1643.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.70009362732206	3.47790757141013	3.72264628018252	3.75675574531863	3.52698121339536	3.79205701028847	0.192566367880924	0.73115664419026	0.931320540641251
Merged-chr17-10841018-4	chr17	10840511	10841511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027032)	promoter-TSS (NM_027032)	652.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	7.10275909935639	7.22724700858378	6.87994691898263	6.8323477299348	7.08072631427674	6.9809507002544	-0.174475850971183	0.495471216257323	0.832500902975543
Merged-chr4-132493804-2	chr4	132493304	132494304	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 9 of 9)	intron (NM_144907, intron 9 of 9)	16652.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.55939770391889	5.72012760818159	5.44988955081541	5.26076554704252	5.5771678521644	5.68020881864885	-0.137409973497462	0.688893182637548	0.917235946766438
Merged-chr2-78870745-2	chr2	78870245	78871245	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356395, intron 2 of 5)	intron (NM_001356395, intron 2 of 5)	1067.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	2.73552891252001	2.75513232255368	2.86293148446035	2.82218058269757	2.7281913599349	2.81488718927723	0.0226933075364813	0.974621195937473	0.994296985713596
Merged-chr13-9082790-3	chr13	9082281	9083281	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11100.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.1486392153044	5.85196630040133	6.01389201833444	5.99267370139965	5.95146725197405	5.8074556164462	-0.148981673989603	0.62260058369357	0.891225289534451
Merged-chr7-27838564-4	chr7	27838076	27839076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011762)	promoter-TSS (NM_011762)	-8.0	NM_011762	22717.0	Mm.379046	NM_011762	ENSMUSG00000078779	Zfp59	Mfg-2|Mfg2	zinc finger protein 59	protein-coding	4.77103679346844	5.07567126966685	5.09910915674546	4.69569906604122	4.70294618825339	5.06588736639574	-0.365329122192738	0.368635118754224	0.753571908443924
Merged-chr3-105931315-4	chr3	105930826	105931826	+	807.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033780, intron 1 of 5)	intron (NM_001033780, intron 1 of 5)	1338.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	5.85058196033847	6.0809350249094	5.8820872128148	5.87920640912482	5.98683107936817	6.18694614299888	0.123099575822115	0.685413030809723	0.916264475254709
Merged-chr1-55838772-2	chr1	55838272	55839272	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92469.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.82786543073367	2.78940328259129	3.04243800141939	3.15848922855629	2.96589079011123	3.22715778652148	1.09026863110163	0.116569527592537	0.455847224923387
Merged-chr9-99563853-4	chr9	99563346	99564346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 1 of 21)	intron (NM_028768, intron 1 of 21)	5053.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	4.0901352244993	3.88783017963071	4.38257660061989	4.2617305967106	4.59647511003801	4.40761045338064	0.833358694158587	0.0884804634361688	0.394802788588413
Merged-chr13-47038206-3	chr13	47037712	47038712	+	937.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016785, intron 3 of 8)	intron (NM_016785, intron 3 of 8)	5005.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	3.59742341794642	3.61298775818719	3.78765940065702	4.52404277098972	4.77069201308936	4.60936953739741	2.97521681792201	1.69498475896754e-08	1.4539823899399e-06
Merged-chr3-116122944-4	chr3	116122457	116123457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	6731.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.85350607602675	6.13322820788026	5.96773624151761	5.90214324319922	5.95754946664884	5.934540579828	-0.105272565022923	0.724601359803521	0.929435720851808
Merged-chr12-55485518-2	chr12	55485018	55486018	+	784.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7129.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.27241655607379	3.02310571577939	3.03203984448307	3.26104583626843	3.01878741294411	3.22446542971895	0.21876975311502	0.741797640457344	0.934976596408911
Merged-chr7-81829552-4	chr7	81829042	81830042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146193)	promoter-TSS (NM_146193)	-111.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	8.20478877526481	7.71156993025482	7.70062506990424	7.63518831036422	7.39131865324165	7.61908135662884	-0.505045332333789	0.0512115067784021	0.288465565228967
Merged-chr11-96310338-1	chr11	96309838	96310838	+	541.0	f0_balb.idr	Intergenic	Intergenic	-3428.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	4.76703134483057	4.65370533978853	4.92740345336097	4.9022436502363	5.04890716626707	5.06049058456739	0.504603458357255	0.191333515820243	0.577915466365166
Merged-chr7-98415665-4	chr7	98415158	98416158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24758.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	5.01406311111604	4.68779720934238	4.74298937796092	3.97416455005414	4.36239463531229	4.39878724068693	-1.40520799789663	0.00270772896193381	0.0389375316893322
Merged-chr1-91078876-2	chr1	91078376	91079376	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 5 of 22)	intron (NM_008515, intron 5 of 22)	25432.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.26006704866226	3.26389399667127	3.78110389545743	3.26524390826096	3.02183147286358	3.56744120236706	-0.583197769379514	0.39374792368065	0.771931441253922
Merged-chr5-36546721-4	chr5	36546336	36547336	+	573.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-16213.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.4341018465308	3.37040611336549	3.63526512591777	3.22273763197525	3.19911600701944	3.28111485544074	-0.981543952506274	0.109899072871571	0.443184138539948
Merged-chr15-66555560-4	chr15	66555053	66556053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 3 of 9)	intron (NM_172514, intron 3 of 9)	5493.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	3.66074276139583	3.96387120594652	3.90450444902138	3.77697930178725	3.98497232686693	3.7700027524135	0.0183937542517796	0.972556532282039	0.993868590220018
Merged-chr3-40711175-1	chr3	40710675	40711675	+	590.0	f0_balb.idr	intron (NM_178386, intron 1 of 5)	L1_Mus3|LINE|L1	2304.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	2.87682740696137	2.6294888412867	3.05050123709802	2.68973891084022	2.48298750483228	3.06739548039358	-0.461346829027062	0.571653396034728	0.869547320544841
Merged-chr5-130255004-2	chr5	130254504	130255504	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178897)	promoter-TSS (NM_178897)	526.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	8.12194290330381	8.38134549276435	8.05576448138911	8.0924963946244	8.32452478679861	8.14687556420051	-0.005169636197623	0.981705956334845	0.995815982331978
Merged-chr1-193128347-2	chr1	193127847	193128847	+	659.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151719, exon 3 of 12)	non-coding (NR_151719, exon 3 of 12)	1904.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	3.15557523939922	3.01243676852164	3.26842975851703	3.3184602164834	3.11966350011622	3.39374970053561	0.55337003985445	0.38993725405476	0.769401696657453
Merged-chr6-134635435-4	chr6	134634948	134635948	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2960.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	4.91348233410308	4.63931250486183	5.31520674628882	4.61729859135324	4.5751588600487	5.17933044897347	-0.366374740984802	0.427683991007357	0.794559469584267
Merged-chr17-83708002-3	chr17	83707517	83708517	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 1 of 16)	B1F1|SINE|Alu	1854.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.68315346360811	7.13313532311554	6.84969609331773	6.95668144112021	7.60318116844127	7.62285618396516	0.786238705137428	0.00915413829839971	0.0946826466338628
Merged-chr4-47353127-4	chr4	47352627	47353627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-95.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	7.0258649548475	6.7195944818963	6.94500113203893	7.10484062890155	6.698301928392	6.8612107653473	-0.00729768970908163	0.97848418484286	0.995156233070192
Merged-chr11-98837373-2	chr11	98836873	98837873	+	749.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080925, exon 1 of 15)	exon (NM_001080925, exon 1 of 15)	588.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	2.61756250733092	2.3377717934604	2.4845988751001	2.21324728962378	2.17294571159357	2.2289164312875	-2.01977857469617	0.027078488143493	1
Merged-chr11-114571348-4	chr11	114570840	114571840	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97203.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	4.07713928207082	4.05571477813962	4.41360254413651	4.65414716524374	4.74035482202366	4.3485574195001	1.09220376233836	0.0191970284914976	0.157234604461121
Merged-chr1-164060251-4	chr1	164059745	164060745	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	-1831.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	2.74448315055041	2.93370384089212	2.73367277356365	2.94895477152743	2.92283023648985	3.38266697370828	1.33608791206741	0.0732244433898872	0.355590498522316
Merged-chr7-73534992-3	chr7	73534476	73535476	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6770.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.71932073451896	5.95781918818451	5.89527270523585	5.96001773008212	5.94350792947645	5.64145229826719	0.0102738562104116	0.973902981185956	0.994171649042264
Merged-chr18-54992600-4	chr18	54992091	54993091	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	0.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.61208252533598	6.51800004429072	6.20402706894729	6.38320650031631	6.56039684947818	6.34838456999276	-0.0427533035159709	0.880543930828852	0.972540920690587
Merged-chr3-146783911-2	chr3	146783411	146784411	+	668.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-2495.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	4.12910142788602	3.58391960082878	3.78825388093321	3.93258721433524	3.73747898679498	3.75268688138382	-0.15015816923192	0.789523545295944	0.949244735006745
Merged-chr7-34266194-4	chr7	34265687	34266687	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	19422.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	3.30084128146876	3.394207259489	3.37974472272861	3.79884018432985	3.56310288490459	3.56534286930807	1.06494262116332	0.0679480862367236	0.341126122817986
Merged-chr9-50946536-2	chr9	50946040	50947040	+	662.25	f0_balb.idr|f0_c57.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	62533.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	4.8912112420685	4.82193139456472	4.83674818678367	4.86146367898169	4.94425368066621	4.82605062088061	0.0718114333037726	0.850864651503819	0.964981271430729
Merged-chr8-84567689-4	chr8	84567195	84568195	+	928.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007578, exon 21 of 47)	exon (NM_007578, exon 21 of 47)	95157.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.95800859576593	5.9589174910929	5.57779129843429	4.31634643908023	3.97394181231958	4.4354650401045	-3.84457279508699	6.27492083352918e-17	2.52233629331544e-14
Merged-chr5-113773933-4	chr5	113773454	113774454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	1142.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	6.97357814352204	6.13825737808704	6.42461098452669	7.0822084405699	7.0238438291087	6.68391273108567	0.587433229410748	0.0767393270499893	0.364990311982731
Merged-chr11-120043579-1	chr11	120043079	120044079	+	699.0	f1_balb.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	-1798.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	3.80539925117815	3.82953127244049	4.13985680774598	3.78606654443514	3.60591020723263	3.98579134995035	-0.421796966748527	0.437259669853887	0.799848369002863
Merged-chr16-33407526-2	chr16	33407026	33408026	+	814.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	L1MB7|LINE|L1	7081.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	4.77672104751264	4.75517044766678	4.81463006389647	5.49326212194054	5.11676329658682	5.20375693866231	1.06598826080934	0.00508314079065964	0.0618450034960092
Merged-chr10-43123619-4	chr10	43123115	43124115	+	947.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175407, intron 4 of 6)	Lx6|LINE|L1	50915.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	4.14454595371786	4.64848840490704	4.16112630504605	4.06407600419522	4.31632773316365	4.3233487023302	-0.288941095587962	0.56168760743637	0.865562309051883
Merged-chr11-109368297-4	chr11	109367759	109368759	+	818.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-4605.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	6.99629536064673	6.86873669226866	6.32305693895798	7.26530190044687	7.13912000390988	6.69593462058796	0.443615274154788	0.158731634140605	0.530537931856658
Merged-chr2-59425831-4	chr2	59425381	59426381	+	848.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39199.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.33599192825447	5.09834082827059	5.30044208063135	4.85866241047146	4.83308447455272	4.85441953844397	-0.850365793299933	0.0223084716698907	0.173529336328715
Merged-chr9-118677078-2	chr9	118676520	118677520	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-34672.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.42828144450414	3.62939307979668	3.4501126213068	3.48155494231663	3.68244010065772	3.88018569535618	0.617951571662465	0.287618514434095	0.684950238953412
Merged-chr6-8420250-4	chr6	8419735	8420735	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88926.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.33478701363448	4.53619201285948	4.47983220739771	4.07855180159025	4.21689935321036	4.14706896813865	-0.80535685688778	0.0794492486920324	0.372693782602869
Merged-chr11-70805238-11	chr11	70804757	70805757	+	962.0575560000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	7304.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	7.34261689643409	7.10479321872175	7.51594158024564	7.53772811129501	7.67032613341734	7.5535704373682	0.391121528440807	0.106010239142072	0.434594013486444
Merged-chr8-64726501-4	chr8	64725976	64726976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025436, intron 2 of 5)	intron (NM_025436, intron 2 of 5)	7102.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	4.49980682883408	4.0648176238352	4.41853052541325	4.13009293470685	4.26407579410321	4.22467380695862	-0.351450626228944	0.463833759294081	0.816038286358001
Merged-chr6-120156062-4	chr6	120155556	120156556	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-37767.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	7.1390547907838	7.12418119856018	6.81618335031444	6.89339748770549	6.96579737897271	7.11066180817677	-0.0834802960924349	0.742500376061011	0.935254413346926
Merged-chr4-105162866-4	chr4	105162348	105163348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	5501.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.90757758802515	4.83963597228211	4.96545079552992	4.98471632412734	5.24806851856552	4.80228707839751	0.298855598573003	0.44548456787941	0.805194667777499
Merged-chr2-51149189-4	chr2	51148678	51149678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028810)	promoter-TSS (NM_028810)	-67.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	4.73288296647993	5.00783747034914	4.59250217851778	4.44264522487272	4.62788087433508	4.96145160329823	-0.2567133895774	0.558813507579013	0.864865322594248
Merged-chr14-61310567-4	chr14	61310067	61311067	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177337, intron 1 of 1)	intron (NM_177337, intron 1 of 1)	814.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	6.75802800505521	6.89808848632268	7.00782751681453	5.83157733322485	5.99799602784623	6.27295148006442	-1.38573953911854	1.2586539170301e-06	6.64530933554825e-05
Merged-chr2-46371930-2	chr2	46371428	46372428	+	615.166626	f0_balb.idr|f0_c57.idr	Intergenic	L1M3c|LINE|L1	675323.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.85133974996647	5.82844957624198	6.04208400600621	6.34555362127595	5.94535651087205	5.55248798842537	0.160149239461749	0.645786970299753	0.900741622380009
Merged-chr6-58990577-3	chr6	58990085	58991085	+	896.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	33917.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	3.74503430805938	3.83302258000446	3.64140118920138	3.64788183949892	3.81611663755747	3.91539922724626	0.156210352011653	0.771201373814932	0.943589735529798
Merged-chr10-95678430-3	chr10	95677948	95678948	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-114302.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	7.21125284938035	7.09627102857894	7.16390870885869	6.62149900290774	7.02711047386856	6.96558167795534	-0.412840487918076	0.110169322500918	0.443473920929912
Merged-chr6-57767834-2	chr6	57767334	57768334	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	(TC)n|Simple_repeat|Simple_repeat	57291.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.24690605130582	4.72347581916865	5.56531054191814	5.01448954662253	5.2385344041456	5.10512225023845	-0.182842794889292	0.666084392194412	0.907966267164068
Merged-chr19-6305569-2	chr19	6305069	6306069	+	912.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	-888.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	4.06191791949025	3.82992773501491	3.89229493825923	3.93013510459085	3.96111192229842	4.10498812020411	0.189891970519696	0.706166989599567	0.922878730238431
Merged-chr4-59033576-1	chr4	59033076	59034076	+	839.5	f0_balb.idr	Intergenic	Intergenic	-1580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	3.18893734802839	3.42273677843735	3.29437585481068	2.98811693744964	2.83915611721426	3.31089651455827	-1.10686733416976	0.112187579521053	0.447436626208972
Merged-chr13-34709167-4	chr13	34708652	34709652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30490.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	5.98901219774463	6.12091323069011	5.66729058292445	5.32771325946476	5.35199048044919	5.37047814561405	-1.11481045357914	0.000772692861840059	0.0147925532851638
Merged-chr13-101761874-4	chr13	101761389	101762389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	6328.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.34626289920845	5.05959826309815	5.11505547375884	5.07638842873867	5.43865582266449	5.27907868750527	0.195430936558173	0.596760853209811	0.880046639147099
Merged-chr12-55493497-2	chr12	55492997	55493997	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-850.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.12457995623574	8.20345559146429	8.36596762913575	8.35541472668546	8.70128919523909	8.12104159846731	0.2661379492367	0.278133451633011	0.675475432925552
Merged-chr16-31898496-3	chr16	31897996	31898996	+	922.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013900, exon 16 of 16)	3' UTR (NM_013900, exon 16 of 16)	19686.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	3.24171355277789	3.30529947730743	3.23392116954393	3.32194267624238	2.8420348112569	3.06737311224284	-0.729208992960177	0.290989122954039	0.688773525714775
Merged-chr17-5220629-4	chr17	5220095	5221095	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	198172.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.41331425116273	5.36145650997407	5.38342240229046	5.37089706146797	5.57128812342926	5.38535018567159	0.130747016337923	0.696032474315486	0.919291538728398
Merged-chr10-78228385-3	chr10	78227884	78228884	+	752.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 3 of 22)	intron (NM_001081055, intron 3 of 22)	16258.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	2.97469618792264	3.0035652776378	2.983336714199	2.98038298004908	2.84046210196019	2.8078347662392	-0.523490714289451	0.449219759447466	0.807594795348397
Merged-chr1-183982401-2	chr1	183981901	183982901	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51597.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	3.31266583584731	3.14355788818092	3.39484123863535	3.26904564056793	3.34438673916935	3.35634251013668	0.164019633555391	0.789218138803352	0.949154090987258
Merged-chr3-27192444-4	chr3	27191944	27192944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9440.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.70632600326013	9.07440392825815	8.49562017790793	8.40636690964994	8.8820486694569	8.37756516370794	-0.283635136436586	0.287938460758792	0.685252288160501
Merged-chr4-130816114-4	chr4	130815615	130816615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	23578.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.47585174954605	5.5863730073103	5.74422571670941	5.83595265630306	5.57550124025558	5.62182354726874	0.15344205525924	0.637494048472175	0.89735407749672
Merged-chr8-108315334-4	chr8	108314838	108315838	+	754.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	269339.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.84856591459357	3.48648842576026	3.65254180358586	3.63200995891455	3.33613280323123	3.87110188856057	-0.164800015247973	0.784535630708051	0.94764742850442
Merged-chr18-56465118-2	chr18	56464618	56465618	+	733.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	32986.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	2.58841535906526	2.44932750309589	2.6734212314171	2.49862689461086	2.46788775651419	2.68590862497365	-0.119487063742861	0.878848508012586	1
Merged-chr5-72261069-2	chr5	72260569	72261569	+	590.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153389, exon 11 of 23)	exon (NM_153389, exon 11 of 23)	57726.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.27063166892706	4.61857073917764	4.57981108347061	4.69558609305067	4.71885006450444	4.5637415595576	0.409691256216041	0.34187865704712	0.731079625185083
Merged-chr6-113045692-4	chr6	113045190	113046190	+	789.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-612.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	7.0254253732146	7.25042374988247	7.1712821924705	7.26999713543471	7.61338344530372	7.07429257337848	0.295347036577825	0.265675584147485	0.663435491304101
Merged-chr6-84583580-4	chr6	84583081	84584081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10229.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.9171202522577	3.73180218078104	3.78250244513567	3.87884355845653	3.51249735141988	3.63930904292404	-0.429878370835632	0.437470428675847	0.799971897010536
Merged-chr19-42005775-4	chr19	42005247	42006247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	L3|LINE|CR1	23984.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.9887542925324	6.99109170926718	6.84339348632139	6.5599652307245	6.84026206583351	6.84285552520185	-0.297905138347928	0.245801345194483	0.642821080898342
Merged-chr9-78520617-2	chr9	78520117	78521117	+	608.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-38893.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.8069513036081	3.94698662383998	3.39515555705383	3.58548606032896	3.53955009489099	3.80384537609986	-0.340386172627631	0.568682225971636	0.868699136396393
Merged-chr16-28911250-4	chr16	28910756	28911756	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	18442.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	5.07099649128414	5.3178269527529	5.20524659888855	5.42067163136331	5.51192874811809	5.39644768402791	0.484509663990221	0.160371397087611	0.532965919658045
Merged-chr3-103728147-4	chr3	103727678	103728678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9823.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.76321760279828	3.25809883438182	3.4779606556217	3.60664292432831	3.65421603325706	3.54995382691864	0.302477990092229	0.617423209643696	0.888810836054056
Merged-chr3-9004554-4	chr3	9003986	9004986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357072)	promoter-TSS (NM_001357072)	237.0	NM_009412	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.64754559547159	8.74755576121755	8.52219601743689	8.48879387624833	8.58798326528196	8.41618503261325	-0.198374518395817	0.335222893112424	0.725385451575238
Merged-chr6-129495096-4	chr6	129494592	129495592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12073.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	4.15355101510397	3.65910396801184	3.40303796751455	3.90188242126518	3.7676440685404	3.77397929066068	0.0972102605972484	0.874813955428517	0.970799530591697
Merged-chr12-54985801-4	chr12	54985308	54986308	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 1 of 26)	CpG-3178	528.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	7.96187636749601	7.84680622382198	7.80747044304044	7.97730329482629	7.66076176511035	8.05421500713557	0.0385086356765338	0.868787820467148	0.969726867826344
Merged-chr1-162574761-4	chr1	162574244	162575244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356527, intron 2 of 7)	intron (NM_001356527, intron 2 of 7)	3916.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	7.16859077709789	6.9911100323674	7.04526569295627	6.67381330719288	6.82303439864017	6.60864694667359	-0.552617658880344	0.028267161923774	0.201202224923301
Merged-chr5-34762342-4	chr5	34761857	34762857	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	617.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	7.90101015481904	8.09818244863666	7.69710350259851	7.84914745064432	7.71356336051018	8.09106845300734	-0.0381782033474681	0.875515878416187	0.971052726689041
Merged-chr11-65794999-3	chr11	65794497	65795497	+	771.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-6638.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	4.63246593571279	4.71930041082379	4.54074376866	4.54958762899892	4.58384092806472	4.84057176707725	0.0412100208311949	0.921220687943935	0.982526400261012
Merged-chr12-84361924-4	chr12	84361414	84362414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172581)	promoter-TSS (NM_172581)	-54.0	NM_172582	217707.0	Mm.280062	NM_172582	ENSMUSG00000021235	Coq6	5930427M12Rik|AW742344	coenzyme Q6 monooxygenase	protein-coding	5.03254348056069	5.40287466276213	5.18920644912882	5.00310244810998	5.12078507876823	5.284501427238	-0.175264591803279	0.637568730355363	0.89735407749672
Merged-chr19-36928555-2	chr19	36928055	36929055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2476.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	6.54946291927074	7.00564259175569	6.78744055732866	7.60046545652933	7.88600323706603	7.05597927642169	1.15382631634813	0.000180017121465143	0.00459134254699167
Merged-chr7-19932841-3	chr7	19932337	19933337	+	735.920654	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11694.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	4.09442713853536	3.78726404183911	4.42838570454248	4.03002792362638	3.73279795343399	3.99701201073339	-0.604127559785288	0.271271287641088	0.668520948407761
Merged-chr11-48838603-4	chr11	48838081	48839081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347446, intron 1 of 6)	intron (NM_001347446, intron 1 of 6)	1110.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	3.17332766607513	2.94811944975969	2.91804170947416	2.96485630806826	3.18020030976615	3.28464515296	0.55380342532147	0.419378730790555	0.788977038405131
Merged-chr3-130709330-4	chr3	130708804	130709804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025509, exon 1 of 4)	exon (NM_025509, exon 1 of 4)	140.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	7.96345671933813	8.14086801208269	7.66669371636643	8.09083927221819	8.13651384402868	7.64546519221755	0.054539156186548	0.834184941644189	0.961273502395445
Merged-chr12-100422687-3	chr12	100422174	100423174	+	944.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98148.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.59703733689686	4.6378857187784	4.33493016232183	4.39965062656198	4.00030109639683	4.40335871469708	-0.687184536769791	0.145316175717314	0.508338649447163
Merged-chr18-38418872-4	chr18	38418398	38419398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-9.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	8.51280970589726	8.32291728414443	7.98211710881309	8.27701858113888	8.05933078889438	8.11932587074258	-0.20083685851793	0.402524792995671	0.778081174697644
Merged-chr10-24159517-2	chr10	24159010	24160010	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	10193.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	4.07225685986365	4.37416828598063	4.03352221568012	4.14447264942158	4.33844097964079	4.46531389568668	0.383060367723727	0.429000914874894	0.795570481157701
Merged-chr10-8811926-3	chr10	8811420	8812420	+	832.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	L1MC4|LINE|L1	74150.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.00955573968102	4.03310253345155	4.11648951214251	3.85059466395751	3.89862506501775	3.79372022962554	-0.608195714957707	0.225945854559579	0.620908968796639
Merged-chr2-69861591-4	chr2	69861101	69862101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	39.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	7.59881047431382	7.66263127631677	7.53179040017617	7.72528079122893	7.54233248393203	7.64592256996253	0.0524704160861661	0.81321874809445	0.955933854959943
Merged-chr7-128611202-4	chr7	128610714	128611714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178641)	promoter-TSS (NM_178641)	-151.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	4.99941474697941	5.02004667679143	5.1691761910614	4.93976549967472	4.60273167423564	4.77758943480896	-0.629474075107051	0.108415259284201	0.439865944548625
Merged-chr19-6046963-4	chr19	6046450	6047450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164709)	promoter-TSS (NM_001164709)	-195.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	8.62591391130325	8.77725832616024	8.46056032470627	8.55895938604221	8.78314451778394	8.47632901395523	-0.0197664832228231	0.928656392547762	0.983838264232875
Merged-chr3-22073322-4	chr3	22072845	22073845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3307.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.42916084115999	4.23644307531802	4.59265018102343	4.64567928532223	4.55052968405272	4.73455979001669	0.5513499395452	0.203464932844344	0.593428095345515
Merged-chr11-101732078-2	chr11	101731578	101732578	+	598.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-878.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	5.01551175908565	4.74095469568992	4.69468365625427	5.13966931970505	4.95934477332644	4.80350933233836	0.324543317609987	0.418084230087689	0.788473936634102
Merged-chr17-29486760-2	chr17	29486292	29487292	+	997.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4253.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.79351486520172	3.76184288015653	3.50166675462788	3.48834380740949	3.52521410920991	3.88439369665194	-0.206966124393632	0.721381677051011	0.928468816889347
Merged-chr5-149690532-1	chr5	149690032	149691032	+	801.0	f0_balb.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	12275.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	3.65193521101688	3.86647834250675	4.43851981774963	3.61020716344164	3.48444015753931	4.02874618377418	-0.921002258302927	0.135762261292453	0.492518955608463
Merged-chr6-108825152-4	chr6	108824618	108825618	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3523.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.91822620083388	4.87470185098461	4.92088393953125	4.86351957434195	4.603714158967	4.76172868059261	-0.367476430114084	0.349325959943645	0.737378281412283
Merged-chr7-101311369-5	chr7	101310942	101311942	+	945.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5644.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	6.03247497146862	5.87745553090707	5.48969172309434	5.93669823460459	6.41365712732691	5.84669569653867	0.473104833654585	0.181144881040034	0.563429844466914
Merged-chr17-34313576-4	chr17	34313052	34314052	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	7685.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.12995676765234	3.95502196061691	4.01705624934473	4.69225030193587	4.59931486041752	4.38131942221225	1.42715063216606	0.00218171312232054	0.0329913770884609
Merged-chr9-118646011-4	chr9	118645516	118646516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	39307.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.96356315184713	7.00939871028216	7.1948667208392	6.56136492739506	6.95454001311945	6.79120203722001	-0.414509260468251	0.117431062392624	0.457559976947523
Merged-chr12-83951429-2	chr12	83950929	83951929	+	875.5625	f1_balb.idr|f1_c57bl6.idr	exon (NM_023633, exon 1 of 1)	exon (NM_023633, exon 1 of 1)	821.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	4.59524438123423	4.60675795435822	4.71931545729826	4.83478535691313	4.4592951104836	4.45361351525319	-0.0988709727510265	0.817940686843575	0.956835450074313
Merged-chr8-40497179-1	chr8	40496679	40497679	+	584.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13300.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	4.10595050613207	4.37433283318962	4.53395184918242	3.57127529345414	3.60359096780727	3.75693984018161	-2.21497641246588	5.45726072399849e-05	0.0016975243002709
Merged-chr2-145859112-1	chr2	145858612	145859612	+	542.0	f1_c57bl6.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44129.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.95307207110391	4.2010716987801	4.67991980239761	4.36688725512982	4.38477667455927	5.05206663035153	-0.0329626822190202	0.949294554065164	0.988171665869286
Merged-chr3-138118929-3	chr3	138118425	138119425	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	12728.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	6.91782398836605	7.13371781463082	6.81797270955201	6.64535662854856	6.78699806466308	6.36419271130829	-0.537501501820711	0.0517640638695278	0.290378495682308
Merged-chr15-13391552-4	chr15	13391037	13392037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217862.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	5.19625606589256	5.46428936609513	5.37651523371101	5.29576218571302	5.21298009078693	5.5247951106268	-0.0196934972911706	0.955456889304302	0.989763164889919
Merged-chr15-6406972-2	chr15	6406472	6407472	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	20224.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.31955614845582	4.34714838777507	4.59749210219772	4.31536977609471	4.11391807709664	4.15263141529781	-0.597633825667923	0.19632250184212	0.584112516346026
Merged-chr6-147476172-6	chr6	147475675	147476675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355713)	promoter-TSS (NM_001355713)	-190.0	NM_001355713	67015.0	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	7.87831842738485	8.04459271165746	7.67293384584386	7.22332207679116	7.31883388305712	6.9689975135881	-1.00866008052308	5.31127405528891e-05	0.00166393257376687
Merged-chr8-26699718-2	chr8	26699218	26700218	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124705.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.44362472352169	6.47683042492652	6.34645694683919	6.71971756862082	6.89778075689016	6.87480327504859	0.642701450425483	0.0129194794504607	0.120408159286955
Merged-chr10-69218597-4	chr10	69218079	69219079	+	796.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	5385.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.17940942591012	5.81723688801129	6.0197482349396	6.36099000128083	6.27272155949479	6.08093728728395	0.39895857658675	0.184250745374722	0.567873209121859
Merged-chr5-99341458-4	chr5	99340920	99341920	+	731.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	RMER17C|LTR|ERVK	-88493.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.87913942021659	6.99304546080701	7.24669534302065	7.23555341002715	7.20528279837409	7.34783877933717	0.33234341554497	0.180171385817863	0.561849644263301
Merged-chr4-152325770-4	chr4	152325273	152326273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	47.0	NR_102291	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	7.06282139735567	7.32862106243811	7.38470242054343	7.19132975293479	7.16152200287959	7.14638379444947	-0.142615709868524	0.556319363188658	0.86357390983939
Merged-chr3-88142327-4	chr3	88141845	88142845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-27.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	8.65491193171329	8.29178519303629	8.19136525878381	8.3552179028718	8.15113284277155	8.00273554337049	-0.306664695321595	0.207155765319231	0.597920729067479
Merged-chr2-117852634-4	chr2	117852135	117853135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30707.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	5.38883623893314	5.19018386099584	5.70177507747545	5.77524270211642	5.99173481317018	5.57467887239167	0.691405367767314	0.049671034089563	0.283569633243524
Merged-chr9-44511282-2	chr9	44510782	44511782	+	727.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007551)	TTS (NM_007551)	12146.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.33691776284121	4.2109217082818	4.1552331036431	4.3494910685159	4.03221274612327	4.52553270170166	0.18037353851725	0.708898554860636	0.923793004962159
Merged-chr14-73146943-4	chr14	73146472	73147472	+	888.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	RMER6A|LTR|ERVK	4187.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.17997821105664	3.19184207330892	3.25229811533826	3.25143482178241	3.25714776458519	3.91449259355647	1.13525991187965	0.0879952707177316	0.39360877786695
Merged-chr8-110847501-1	chr8	110847001	110848001	+	765.0	f0_balb.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	477.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	7.29548024401423	7.7577077175979	7.51660195670381	7.5922654538628	7.812916786971	7.4602243096153	0.140723764673422	0.583076609742085	0.873907285988058
Merged-chr5-64102770-3	chr5	64102264	64103264	+	941.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025700, intron 3 of 13)	ID|SINE|ID	9825.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	3.0515059091655	2.9700515066872	3.26695010358192	3.00349715017729	2.8550247790036	3.28428737191589	-0.198139746532622	0.775246426743325	0.944594834759211
Merged-chr11-110476868-2	chr11	110476368	110477368	+	766.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	-1647.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.65171946485606	2.71856443475097	2.55913023868088	3.22493991711753	2.80455319502382	2.96607898275365	1.85956897159807	0.0184184148375573	0.153043831734001
Merged-chr6-97829330-5	chr6	97828871	97829871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	22313.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	7.38116288955956	7.14156262378351	7.36726977249207	7.57184527077236	7.6042439446773	7.54731657386373	0.408694868056968	0.0757112317800534	0.36229025284676
Merged-chr3-37418409-2	chr3	37417909	37418909	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153561, intron 1 of 4)	intron (NM_153561, intron 1 of 4)	1187.0	NM_001291044	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	4.23499794314664	4.28063845436729	4.08881831062238	4.10142080219334	4.20588070047522	4.10917462644581	-0.185276915714059	0.693633084568795	0.918960880648635
Merged-chr11-117828420-4	chr11	117827922	117828922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027827, intron 2 of 10)	URR1B|DNA|hAT-Charlie	-2408.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	8.61774370886103	8.48759489082196	8.36191993047684	8.44330707736597	8.83854541571388	8.33167144465995	0.0946481386635571	0.691815383875386	0.9184939224729
Merged-chr2-34770194-4	chr2	34769625	34770625	+	858.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1965.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	4.75172246639389	4.76173821901722	4.79056077416202	4.72508667408851	4.44047287392165	4.5356591861789	-0.469039583946419	0.254843355386162	0.651959356603444
Merged-chr10-69247518-4	chr10	69247027	69248027	+	895.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	34333.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.38221203408899	5.26992803668516	5.48419352343346	5.40919058420267	5.50284859383274	5.91626575228496	0.459999402953126	0.191858518807729	0.578684294521097
Merged-chr1-144004245-4	chr1	144003751	144004751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-102.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	8.17387449852289	8.22403429640195	8.05939111684087	7.94544197536457	8.28615568346385	7.81552472917559	-0.16375228927052	0.489950851430629	0.829980359087456
Merged-chr2-75683095-4	chr2	75682580	75683580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	21583.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.69964245896969	7.79342447130212	7.36465016457465	7.36059586474431	7.305201277264	7.0448443601194	-0.571354244711024	0.0244560803410953	0.184315225233273
Merged-chr14-55106595-4	chr14	55106064	55107064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	29.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	6.31948571727203	6.42405766938019	6.46060431467944	6.56150316611007	6.64203389389291	6.24583092680542	0.172604883796465	0.537072123402053	0.854305051501396
Merged-chr15-64026735-2	chr15	64026235	64027235	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-28669.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.53008064173371	3.6372402654957	3.83682592036107	3.54706129996343	3.76840238654644	4.16917828936018	0.574767781593295	0.321666118586599	0.715092425535113
Merged-chr1-4867751-4	chr1	4867243	4868243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	RMER6B|LTR|ERVK	9415.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	5.33232991372249	5.28350936085064	5.22681877593783	5.42789594644024	5.40465456662496	5.11795736278133	0.0989348038335857	0.777455858490339	0.945105000485977
Merged-chr2-158410456-3	chr2	158409963	158410963	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	CpG	610.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	6.64985406113728	6.56687540272847	6.52156325844296	6.61623421570619	6.3437779787135	6.33620040214032	-0.230833902017801	0.394030275337028	0.772046311610617
Merged-chr13-97573271-4	chr13	97572785	97573785	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	13285.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.20300908089101	4.12478894873023	4.17811286636428	4.76163311618981	4.69131831774005	4.29796100803545	1.13770367567224	0.0131912818984087	0.121971350617046
Merged-chr6-136656443-4	chr6	136655945	136656945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5448.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.13894099837693	5.0335725576326	5.04758170717203	6.10815981661159	5.94178405908615	5.84459905809131	1.70087003229115	3.23375961891011e-07	2.00652252326825e-05
Merged-chr16-44762071-4	chr16	44761542	44762542	+	881.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3694.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.87133836264575	5.19791554920138	5.18895708884367	5.12106284028045	5.33583906314002	5.31508539273437	0.349979793472923	0.343317245715326	0.732198933268765
Merged-chr2-124755446-4	chr2	124754948	124755948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101867.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.79930405368984	5.69840319585669	5.92964336152721	5.74821038530336	5.89776014087481	5.89726912317113	0.0801722517134128	0.793167498010487	0.950282657772673
Merged-chr2-172397538-6	chr2	172396941	172397941	+	741.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	L1_Mus2|LINE|L1	3647.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	4.25983432523401	4.13537316774633	4.3212531512606	4.3045789879221	4.09566302296944	4.34529031398768	0.0236431429448504	0.9594439140767	0.990200345348868
Merged-chr13-119366645-2	chr13	119366145	119367145	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308506, intron 11 of 16)	L1MEb|LINE|L1	42366.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	2.50456202080855	2.53408025087924	2.43489132597421	2.61074430483861	2.70905219133643	2.70114969320202	1.05327434153005	0.177389766020095	1
Merged-chr12-3901470-2	chr12	3900970	3901970	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 11 of 17)	intron (NM_153743, intron 11 of 17)	9726.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.05717644912978	2.12980981154019	2.32918305591775	1.99460889980672	1.89184860496562	2.1486226727806	-1.27635194452994	0.185308855926596	1
Merged-chr9-69989908-4	chr9	69989400	69990400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	CpG	434.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	8.11510109566244	8.23237617168159	8.18419841273012	8.03217746875816	8.04225988390381	8.25891087897501	-0.0946449031212392	0.656396010267337	0.904650995831394
Merged-chr13-111687234-9	chr13	111686723	111687723	+	898.009277	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172593, intron 1 of 12)	CpG	1045.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	3.57032173208261	3.14352592531015	3.41775764219984	3.57119217425519	3.05724377310182	3.64660960241046	0.218913489520494	0.746937437381332	0.936426570480179
Merged-chr6-134045172-4	chr6	134044695	134045695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	9495.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.95784305357518	6.77705324292381	7.00871934667618	7.12196159776536	7.28002008064894	7.02658421512154	0.365534942748981	0.14167756738687	0.502373946438537
Merged-chr11-83542673-2	chr11	83542173	83543173	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12155.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	3.02135905003405	3.25144275446847	3.6558074054871	3.00490058120158	3.43727365862518	3.20526254383988	-0.397183311968371	0.57705467173372	0.871932249684379
Merged-chr6-83636586-4	chr6	83636093	83637093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19523.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.27495924158507	7.50158269090001	7.25893180411441	7.45335560102717	7.64129254802505	7.36238551918279	0.210467099460846	0.381697414500623	0.763339785751624
Merged-chr3-65873287-4	chr3	65872765	65873765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	84984.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.3363372456055	4.41183592495521	4.39166106529749	4.63825903519745	4.60222679254306	4.50277851626881	0.518414196854616	0.222504660432065	0.617465722432781
Merged-chr16-24919900-4	chr16	24919401	24920401	+	963.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-139738.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.79295776365974	7.23897984976128	6.61761831608243	6.88282193076867	7.06759757314815	6.65948135736202	-0.0496761132352893	0.867775182181783	0.969442397421746
Merged-chr5-135961971-2	chr5	135961471	135962471	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160366, intron 9 of 10)	intron (NM_001160366, intron 9 of 10)	12505.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	6.64345138435614	6.36801818925022	6.88851907115369	7.21490091944361	7.48871072002665	7.4210138736178	1.13075695530253	2.88918051872068e-05	0.000997108803822937
Merged-chr9-73113466-4	chr9	73112941	73113941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198609)	promoter-TSS (NM_198609)	-28.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	6.97686444458987	7.3457209763069	7.06082898297508	7.18983916687036	7.3851695056114	7.29021270786912	0.224892472135149	0.3715833858567	0.755694928635403
Merged-chr17-27569990-3	chr17	27569512	27570512	+	650.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4285.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	4.89725354675789	5.0939392304409	5.32111265204335	4.88164962535407	4.8582474860511	5.17715878755135	-0.293689909061021	0.453545620752711	0.80983494973791
Merged-chr19-53038694-4	chr19	53038189	53039189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-35.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	7.56201833045079	7.97108410953003	7.70245891642954	7.5027664478802	7.58459870919213	7.3359522920268	-0.399715499507414	0.102763718749399	0.427452684948009
Merged-chr12-61994465-4	chr12	61993956	61994956	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	471289.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	2.71420559452832	2.76388843453986	3.06169815567234	2.71102966659059	2.65264727138667	2.66118210430074	-0.918610078343329	0.222161059357754	0.617070381781888
Merged-chr8-34146740-4	chr8	34146258	34147258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-19.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	8.16178515542866	8.17093435106386	8.08376811415626	8.23061207113235	8.22135358981023	7.97694516485489	0.0171316147513282	0.936126986615319	0.986034863960057
Merged-chr11-109424601-4	chr11	109424084	109425084	+	658.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-1362.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.04618122809448	3.88073325755615	3.94868832346309	4.2387973855855	3.85421605552007	3.86377799495061	0.115373158202824	0.823661935253202	0.958451755471188
Merged-chr1-191312796-4	chr1	191312316	191313316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	5302.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	6.15610813766837	6.30043242007063	6.11601259827365	6.56273242902573	6.73017555730271	6.48102035858387	0.659254138331312	0.0165388250924474	0.14230195042805
Merged-chr2-152832093-2	chr2	152831593	152832593	+	700.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009743)	promoter-TSS (NM_009743)	-365.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	4.53685058941362	4.34892105208821	4.28865054358826	4.59999645060893	4.59810050400813	4.88055972751618	0.710113151271431	0.103852160391632	0.429660429687098
Merged-chr9-114401229-7	chr9	114400724	114401724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009752, exon 1 of 16)	exon (NM_009752, exon 1 of 16)	129.0	NM_001200002	100504715.0	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	7.57606526509982	8.04756531938269	7.93360969297495	7.66326130615067	7.69674030129114	7.56078493124556	-0.32177506589487	0.186219539632441	0.570800687163344
Merged-chr11-103985416-3	chr11	103984900	103985900	+	716.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001304574)	TTS (NM_001304574)	18529.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.22753243277146	6.02192279988402	6.43219233289776	5.84492730068841	5.60746658958408	6.18060896424152	-0.596184561218349	0.070944688535274	0.349403115930339
Merged-chr2-167377319-2	chr2	167376819	167377819	+	979.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28141.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.41956694159389	7.15564056385556	7.26617226391997	7.34534763088185	7.3308163898979	6.91466611997275	-0.0952977560728312	0.713150402899196	0.92541785131338
Merged-chr11-86356702-4	chr11	86356202	86357202	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	823.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	7.48472961122242	7.55787144762148	7.30417710491505	7.59047284593619	7.86029129510639	7.27771357347457	0.220590082274873	0.398508278856039	0.775273667788888
Merged-chr17-67474142-4	chr17	67473652	67474652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119661.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.39263917698196	5.62904211548013	5.39028366272803	5.46372374804721	5.61137869224593	5.42297989723933	0.0520627428313775	0.876853378668753	0.971407825796496
Merged-chr4-150474984-4	chr4	150474466	150475466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	177208.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.14947515531825	6.08717537673088	5.92273439545092	5.47691732116683	5.69470190861648	5.83859129236119	-0.69215417265655	0.0267533809626821	0.19472492329801
Merged-chr14-77874870-4	chr14	77874325	77875325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025384)	promoter-TSS (NM_025384)	92.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	6.63102716065034	6.87308410088493	6.43024365895937	7.40594596050293	7.55369341034364	7.03902192975235	1.04902522380458	0.000214421280180013	0.00529423319917463
Merged-chr19-3325116-4	chr19	3324619	3325619	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	1818.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	7.59085202036579	8.03136705087686	7.66889850868778	7.417006866847	7.66809088376994	7.6241179349995	-0.300562515770645	0.228297930673835	0.62336085286764
Merged-chr11-30649227-4	chr11	30648732	30649732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029344, intron 1 of 3)	CpG	164.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	6.70110170643358	6.70796759630863	6.81818432010357	6.96008039343394	6.65193628601646	6.60589480941586	0.0181583996954339	0.94525963105296	0.987875414328125
Merged-chr16-18811721-4	chr16	18811214	18812214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028403)	promoter-TSS (NR_028403)	258.0	NM_001161623	12544.0	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	7.56447690241111	7.86123935458602	7.27358164014432	7.67685534865668	7.92813776111297	7.4798295608319	0.169732712166379	0.532299695763402	0.851971173271146
Merged-chr4-141719568-2	chr4	141719156	141720156	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	3763.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	5.99691946198128	5.84247873105568	5.9009378777168	5.69904373987348	6.18531916364972	5.86410885919295	0.0511391823776171	0.873430799347475	0.970403508366666
Merged-chr1-63730618-4	chr1	63730128	63731128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172422)	promoter-TSS (NM_172422)	3.0	NM_172422	75619.0	Mm.30965	NM_172422	ENSMUSG00000025962	Fastkd2	2810421I24Rik	FAST kinase domains 2	protein-coding	6.30134301423982	6.67729058556719	6.20906783086518	6.53674966480012	6.36423197032951	6.01382498633778	-0.146474279027885	0.642358530542495	0.899398873915991
Merged-chr1-180811827-4	chr1	180811323	180812323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008210, exon 2 of 4)	exon (NM_008210, exon 2 of 4)	1782.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	6.03071018703668	6.12407466496564	5.84089902754596	6.18810372248791	6.37863990419521	6.43887059097822	0.545670315659273	0.0616557847183181	0.32212895137615
Merged-chr4-154928200-4	chr4	154927747	154928747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-170.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.94561126266662	8.04575370530207	7.58568637677901	8.01799145424233	8.36710501063576	7.99261465100804	0.371055074575141	0.140497193257706	0.500770634250898
Merged-chr1-66864660-2	chr1	66864160	66865160	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1351.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	3.85555738697809	3.55238833957837	3.71558015843757	3.60605402378333	3.56604764947542	3.62798636731588	-0.397458392545267	0.474559489913161	0.821557327262028
Merged-chr8-116629693-2	chr8	116629193	116630193	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103298.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	3.6690465935493	3.74218478537548	3.74213981352047	4.05416667425128	4.07483959522657	4.15450047844103	1.17110805071967	0.0213282941154948	0.168535232395057
Merged-chr19-41342314-2	chr19	41341814	41342814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	42756.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.85116640969431	7.05105511377776	7.09920209646187	6.94931844265749	7.22200210315532	7.22866161595127	0.209969887778207	0.404818804447564	0.779791650050306
Merged-chr17-88460476-1	chr17	88459976	88460976	+	594.0	f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	19772.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.3832040852289	3.47753382476137	3.21049732670431	3.56049437590491	3.441251730616	3.5710491087067	0.574801001156209	0.338719378202757	0.728611809665866
Merged-chr3-153917372-4	chr3	153916872	153917872	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A3|LTR|ERVK	-4406.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	4.10579000816063	4.2582937228488	4.40770321946683	4.21779782861917	4.25440480849985	4.2604237140284	-0.0311407232774524	0.946236557933376	0.98796006280508
Merged-chr17-64604254-2	chr17	64603754	64604754	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	2605.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	3.36937050655778	3.20745092981004	3.08942673729253	3.00757447611413	2.90679802284356	3.22062607375438	-0.82475724511141	0.222183594855569	0.617071180265092
Merged-chr17-26510208-2	chr17	26509708	26510708	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1736.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.66213084260558	5.83996001550016	5.57652636464069	5.59271353650453	5.34642462818272	5.36883806565208	-0.500572048726275	0.132131727273032	0.486188104304079
Merged-chr6-67266875-4	chr6	67266335	67267335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-144.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	6.03655039966143	6.45204465526212	6.23168470869397	6.38279825087215	6.04467561980818	6.4070709315832	0.043108785651356	0.888163773343115	0.97401529899353
Merged-chr7-38025555-3	chr7	38025021	38026021	+	828.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-5969.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.11783079638951	4.09200528152621	3.92547733480402	3.44607021840645	3.06296745315219	3.39207886627334	-2.9228056604155	1.06931849431608e-05	0.00042430068323821
Merged-chr15-24990251-4	chr15	24989763	24990763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	423501.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.36061154089288	3.0564342958894	3.16210752148299	3.32544469472244	3.2002219200178	3.2348479163131	0.216431607693185	0.735203753005107	0.932617455907478
Merged-chr2-68380806-2	chr2	68380306	68381306	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	91175.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	2.9679429149622	2.94473054593957	2.85509295402608	2.88795120457782	2.83312050609282	3.04705228383822	-0.0282777989257956	0.967407197952187	0.992555129128888
Merged-chr7-128313305-2	chr7	128312805	128313805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15174.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	6.18567435047623	5.70912153387035	6.01465318144971	6.22324892895667	6.10145154503428	5.83089490589466	0.14649933095303	0.650805024218649	0.902681635626215
Merged-chr1-180736759-4	chr1	180736252	180737252	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133225, exon 4 of 8)	exon (NM_133225, exon 4 of 8)	10709.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	4.56878016886069	4.22195247179193	4.66533072527052	4.28674984417367	4.44118444027939	4.61727129246032	-0.1041185627338	0.820431973811232	0.957629072297684
Merged-chr1-140171804-2	chr1	140171304	140172304	+	833.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	11607.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	3.03645024370334	3.09040313080765	3.04933266929196	3.04390852625337	2.84657677989375	3.00244695975717	-0.450449217774611	0.50370701411411	0.837146033423024
Merged-chr15-99771623-1	chr15	99771123	99772123	+	588.0	f0_balb.idr	intron (NM_028015, intron 1 of 9)	intron (NM_028015, intron 1 of 9)	892.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	4.57854069643914	4.67832363052817	4.69652377780338	4.71043129621811	4.08761903481774	4.34191450546222	-0.610412405376365	0.193465674212987	0.580622710324226
Merged-chr15-78305694-4	chr15	78305204	78306204	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007781)	promoter-TSS (NM_007781)	17.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	5.76682145523312	5.55937685372496	5.86887642202933	5.90648194251513	5.54703641957935	5.56646767161493	-0.0849395816196339	0.798689091450503	0.952063885260145
Merged-chr10-61143505-4	chr10	61143030	61144030	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	4154.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	5.92792002839652	5.96370543759658	5.67005384574908	5.71344304619723	5.64067480169092	5.59062559568437	-0.396385094201797	0.206864292508683	0.59760316810966
Merged-chr2-32536330-2	chr2	32535830	32536830	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	971.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.42162795605302	5.65361141775907	5.63218230268708	5.76053878745928	5.83356576688452	5.74738003028731	0.392101684603936	0.214965856098951	0.608170317702451
Merged-chr15-78876363-4	chr15	78875855	78876855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145929)	promoter-TSS (NM_145929)	-835.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	6.84863968770954	6.94626744681309	6.82689746527755	6.8653974627423	7.2242743279046	6.55292451706603	0.076857841092686	0.789924325655426	0.949311112850285
Merged-chr10-96690505-4	chr10	96689997	96690997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73496.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	8.16110176334913	8.19313097790612	7.7770297052185	8.11669292374712	8.38934401057411	7.70335882416636	0.0661288888027221	0.808245076418783	0.954666784752209
Merged-chr12-98773887-3	chr12	98773385	98774385	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160108, intron 1 of 6)	intron (NM_001160108, intron 1 of 6)	2863.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.52390366646944	3.74083852728814	3.88800900403207	3.90680040644609	3.3701220587165	3.70955442633163	-0.14449324629275	0.808061606606758	0.954605755203254
Merged-chr2-45758236-3	chr2	45757726	45758726	+	730.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61621.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.91084423383579	3.65344815670679	3.82379222808777	3.49594404388586	3.61666959320849	3.89243278487338	-0.424725019686301	0.447577323084113	0.806548958484392
Merged-chr16-22445494-2	chr16	22444994	22445994	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5924.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	7.04572037836169	6.8712123224236	6.85451017301999	7.09649275988083	7.40143570537765	7.39677854026625	0.567338754030098	0.0236239985202723	0.180248391812976
Merged-chr9-95507589-4	chr9	95507104	95508104	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	4392.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	4.30804707411345	4.24960837599263	4.62134670298131	4.80159807473312	4.67448717257969	4.43694200062713	0.645926070045478	0.147442417727079	0.512335617398931
Merged-chr2-128687375-4	chr2	128686868	128687868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008569)	promoter-TSS (NM_008569)	27.0	NM_008569	17222.0	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	7.13119046224024	7.22138387804549	7.18726697797208	6.92919664345883	6.82411121922281	6.61029511806772	-0.577686520009322	0.020549547634934	0.164301600807878
Merged-chr13-23543491-4	chr13	23542933	23543933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	11.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	6.9493375453985	6.83429414778427	6.41855202705362	6.97702331603215	7.21771695278106	7.02033953239352	0.481029933808592	0.0832793788891252	0.381896420975824
Merged-chr12-3832725-2	chr12	3832225	3833225	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	25565.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.54361293695793	3.63620535485672	3.72717872560585	3.8258938606402	3.82079244262027	3.46434951328144	0.298061751179663	0.598751272379095	0.880808927175713
Merged-chr4-139494861-2	chr4	139494361	139495361	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35687.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.28821736972232	3.3327545270976	3.47353943818866	3.284187231192	2.90788382753869	3.3303665323894	-0.751596673776971	0.259659485328917	0.657223042078191
Merged-chr12-111810010-4	chr12	111809510	111810510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028875, intron 3 of 7)	intron (NM_028875, intron 3 of 7)	3869.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	3.55450943211347	3.48898481441372	3.64128796176847	3.63183000283828	3.36621749291024	3.26036978942778	-0.470346263227793	0.433519917398248	0.797815674529737
Merged-chr14-52279490-4	chr14	52278973	52279973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-78.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	7.70448380228305	7.72062804246374	7.78313166578467	7.72402173255823	7.53226701324112	7.61907294655718	-0.157683354646141	0.472417868277363	0.820550293768681
Merged-chr4-132008385-4	chr4	132007877	132008877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	40701.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	8.43578502903128	8.35784809594538	8.06899660224893	8.36235022385871	8.69356821887074	8.02617529212704	0.135327430658113	0.60488314608207	0.883259091356564
Merged-chr16-22511451-4	chr16	22510948	22511948	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130988)	promoter-TSS (NR_130988)	-32.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	3.9569756087016	4.16432944721926	4.12489154640455	4.20052880726132	4.40166328551445	4.49589278850003	0.779549436001576	0.0984545546341248	0.41841029007527
Merged-chr6-32529146-2	chr6	32528646	32529646	+	852.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	18005.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.18273189913853	4.41174637381502	4.62479497289357	3.92840742711909	4.02278896963924	3.96039993915394	-1.22384726628116	0.0134181802022918	0.123267153277808
Merged-chr3-94483517-3	chr3	94483006	94484006	+	874.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357787)	promoter-TSS (NM_001357787)	784.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	3.00673361382847	2.86246183094927	3.47272352563177	2.77638962206011	2.94225369227004	2.76323842587052	-1.39660949993509	0.0698393863839335	0.34601686313815
Merged-chr11-79528849-5	chr11	79528340	79529340	+	886.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1769.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	7.80239136486965	7.82635489733875	7.69982169797053	7.82345273538554	8.34447393990609	7.7381625536026	0.326639865906099	0.208425115667614	0.599337828187015
Merged-chr2-31141297-3	chr2	31140859	31141859	+	859.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	CpG	649.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.6737552013372	6.49150368908311	6.19454239772945	6.57134010982405	6.34200481799252	6.53028970256497	0.0015754033015536	0.995647296811614	0.998961028701257
Merged-chr2-158155790-4	chr2	158155292	158156292	+	974.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9400.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.81796211053556	4.47938861514318	4.81052566608775	5.19606348294393	5.03293060238489	4.58530653600126	0.588995183243343	0.173696968322504	0.55292812026605
Merged-chr15-101105584-4	chr15	101105088	101106088	+	889.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10167.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	4.12146372258823	3.74383320722997	3.79719916603616	4.7977486535246	4.31651388948813	4.70150583175651	1.93992485186358	0.000235903308867359	0.00572442185017066
Merged-chr18-38251254-2	chr18	38250754	38251754	+	610.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027904)	promoter-TSS (NR_027904)	-689.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	3.97506075041	4.0037704347528	4.65110476379607	4.09499494264643	4.01762161818554	4.57467319895326	0.0142973600705448	0.979251146423727	0.995177657748265
Merged-chr6-83165806-4	chr6	83165308	83166308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198866)	promoter-TSS (NM_001198866)	-116.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	6.46509828037251	6.43520598465312	6.21893470350951	6.69957780111432	6.48594846754906	6.53261268257612	0.305134049266871	0.263053722835685	0.661066252782647
Merged-chr1-131188730-4	chr1	131188240	131189240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	MIR3|SINE|MIR	11445.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	5.6823815189285	5.62751130635662	5.71681775363132	5.59575209628707	5.66546446890012	5.82810617795618	0.0375861820535811	0.904577739357132	0.978142219404953
Merged-chr16-91013639-2	chr16	91013139	91014139	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026110)	TTS (NM_026110)	-2331.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	4.63644250318806	4.81307899525686	4.81876906269695	4.42828631927835	4.19947058748607	5.01628426597969	-0.409748319521568	0.392798075397279	0.771320674414895
Merged-chr11-120581131-4	chr11	120580626	120581626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 1 of 5)	CpG	494.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	8.12144393421829	8.01093208345158	8.11825209376189	8.03022614471707	7.84696800588708	7.81207717196221	-0.258594074093887	0.229783395260718	0.625484714500582
Merged-chr1-127202449-4	chr1	127201962	127202962	+	965.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2524.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.28806953265966	3.32370189875669	3.01434916919516	3.18700236779814	3.03515916268717	3.3253080902533	-0.165676385112125	0.802746907390657	0.953342153890183
Merged-chr3-27863076-2	chr3	27862576	27863576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33292.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	6.48810367426908	6.43547502251408	6.12153309495415	6.22128492607799	6.13318159031066	6.09159868232403	-0.362369783136801	0.207814493534198	0.59868364609575
Merged-chr2-58850696-3	chr2	58850188	58851188	+	926.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 11 of 13)	MTEa|LTR|ERVL-MaLR	95504.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.91299733633907	3.33278518500821	3.04051688133282	2.75123402959175	2.81137475570952	2.73550670182412	-1.69548530605154	0.0246948345973995	0.18556052962913
Merged-chr10-120202363-5	chr10	120201917	120202917	+	903.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	-287.0	NM_001359184	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	5.86713938779102	5.73376655005656	6.096325072149	6.36338805552413	6.0209928107357	6.1982654111118	0.5186336221811	0.0923616149767611	0.404826446427852
Merged-chr6-8288931-3	chr6	8288451	8289451	+	853.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	29663.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	3.92259821829703	4.11351066367424	4.03513915470689	3.92773957278092	3.9044950022028	3.85530104838951	-0.390336008481724	0.43507698527932	0.798753078814766
Merged-chr19-5806946-4	chr19	5806454	5807454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	8.25626994364113	8.11363730532625	8.02379743406012	8.06033619525254	8.27743618477622	7.90930154045318	-0.0555146164580887	0.807488455004792	0.954557080558103
Merged-chr6-53708082-4	chr6	53707563	53708563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112762.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	2.80930963869318	2.83282443932318	2.85809383032372	2.89131775266364	2.95887611885648	3.21722787742263	0.920482565831966	0.188676473166535	0.574222837446979
Merged-chr12-3856877-3	chr12	3856382	3857382	+	839.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	5362.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.63272918747951	6.72840941603811	6.87958001366615	6.80876994656884	6.92535269938254	6.34005722302742	-0.0263773314093372	0.927285630752532	0.983584626679457
Merged-chr11-98357561-2	chr11	98357061	98358061	+	776.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	722.0	NR_045477	69338.0	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	5.4916607623803	5.72903661956073	5.90829550090812	5.50118473665183	5.70627120181538	5.53695597995244	-0.2236644152867	0.502953673054151	0.836691193058519
Merged-chr2-25197691-2	chr2	25197191	25198191	+	908.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-878.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	5.13431490011708	4.99677010975087	5.61787223701217	5.33712103295942	5.56098321337151	5.67927810748143	0.522765903780135	0.169006566774049	0.545635945763902
Merged-chr10-122597592-3	chr10	122597003	122598003	+	945.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27612.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	3.52588005875655	3.27151323056248	3.61135158818875	3.19506958510799	3.40272630494058	3.68024424309539	-0.139748500998248	0.823901897121359	0.958451755471188
Merged-chr6-97819162-4	chr6	97818656	97819656	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	12098.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.36109635285296	6.65834645623798	6.29075984787067	6.38566913433687	6.67975507732679	6.28890066287001	0.0308960255595361	0.916624056762859	0.981330246054563
Merged-chr14-73041777-3	chr14	73041294	73042294	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162412, intron 2 of 4)	intron (NM_001162412, intron 2 of 4)	7320.0	NM_133720	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	2.80627042716457	2.76306300541811	3.11276496802843	3.02523636268316	2.61986650507953	2.95690314462973	-0.104952968149255	0.889182212637751	0.974207858658472
Merged-chr6-52191562-2	chr6	52191062	52192062	+	763.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008265, exon 1 of 2)	exon (NM_008265, exon 1 of 2)	141.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	2.57146179795865	2.46416571451011	2.54602000997599	3.04664020363446	2.7524919556271	2.94087070980442	2.22062579233172	0.00581740203417373	0.0681958845392403
Merged-chr7-31002844-4	chr7	31002343	31003343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20922.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	5.67053040024877	5.71256705876198	5.72826052579261	5.48284934750938	5.23472974862717	5.81391556837384	-0.350031570506905	0.312669956979893	0.707330048133333
Merged-chr17-10359604-4	chr17	10359102	10360102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35000.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	7.61097213319914	7.62696201152619	7.17492907644409	7.37474026721725	7.41392742478511	6.89125918856461	-0.349320765599391	0.212050324836403	0.604420229358776
Merged-chr16-25053084-4	chr16	25052595	25053595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6544.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.72035187938322	6.7260277826122	6.70862835182863	6.59829972120669	6.47138545570151	6.67220050789207	-0.226153900790378	0.376434533593565	0.759220718571954
Merged-chr5-122394589-2	chr5	122394089	122395089	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	ID_B1|SINE|B4	2711.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	3.69510071314717	3.22774728711904	3.66161965993377	3.42486393195418	3.44892052906601	3.62991306072596	-0.15218980162997	0.80403310812508	0.953557286986578
Merged-chr7-127470973-4	chr7	127470484	127471484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-630.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	7.80034398323887	7.5169991282014	7.56650236249175	7.6564550381869	7.65609339742749	7.61367217039381	0.00956400250414629	0.966482395835719	0.992315915860502
Merged-chr13-49197690-2	chr13	49197190	49198190	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	10143.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.72704077523064	7.78022975540264	7.62127451838253	7.65049276849035	7.70212430812205	7.64039446950913	-0.0704417622650086	0.745789110891676	0.936251303305737
Merged-chr9-64179320-4	chr9	64178813	64179813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183316)	promoter-TSS (NM_183316)	16.0	NM_183316	330959.0	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	7.41872206569607	7.57396502456486	7.29799930275529	7.45505358317901	7.63392740798346	7.37770075366388	0.0864716497934257	0.716266211179645	0.926569584146506
Merged-chr11-21425925-4	chr11	21425443	21426443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54676.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	6.55027721025303	6.77864579245175	6.60488019503563	6.47189805202168	6.50162937727355	6.37413755529729	-0.314598654766973	0.235452117812527	0.631617119702907
Merged-chr2-75788620-6	chr2	75788075	75789075	+	854.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43602.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.34159430637843	4.10271238538717	4.3934298990869	4.67376763876252	4.52745397669357	4.46113008329707	0.719351079946789	0.10689386533152	0.436454439973323
Merged-chr2-181286898-2	chr2	181286398	181287398	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	1068.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	6.79795680903641	7.18457102846353	6.80468982486245	7.20970268668114	7.43734218144696	6.89304259308177	0.398748805246625	0.161376224758739	0.534248146324706
Merged-chr2-142611342-4	chr2	142610841	142611841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	290123.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.40813406822968	4.10807092056332	4.5776630994076	4.53345817895233	4.21434329475188	4.48483622452014	0.10893455631032	0.817556827932296	0.956767881392089
Merged-chr13-94174326-2	chr13	94173826	94174826	+	772.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_172589, exon 3 of 4)	exon (NM_172589, exon 3 of 4)	110955.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	2.85413045540471	3.07164997687338	2.91216097856437	2.57586142322804	2.63900703007221	2.60564462879688	-1.89811036569068	0.0156161123965944	0.136518751869703
Merged-chr10-98966827-4	chr10	98966384	98967384	+	969.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	51732.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.222984724984	5.07360930691047	4.68438914125765	4.60070933535355	5.01047427147643	5.0922383501322	-0.227422190925829	0.593838806077624	0.878656721248079
Merged-chr1-43321057-3	chr1	43320518	43321518	+	862.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124257.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	5.43884957363306	5.38456060491285	4.95529036211221	5.40978837062007	5.65186556189312	5.64070897751553	0.54061618593331	0.138031369102651	0.496554870743337
Merged-chr9-22225732-4	chr9	22225249	22226249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	37.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	7.14356304208454	7.28064020440616	6.91243473926493	7.54063588957974	7.58382026027899	7.13972953569699	0.468786344553002	0.0756915154555726	0.36229025284676
Merged-chr12-55474034-4	chr12	55473541	55474541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18606.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	7.79091910305011	7.62187800256222	7.4363884887013	7.35808477995898	7.69677504762057	7.36167915918099	-0.204589994329769	0.414207287008163	0.785678526851054
Merged-chr10-68130033-7	chr10	68129594	68130594	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	148632.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.74087979184368	5.58765627195837	5.55671468966622	5.90267293042645	5.71803503799585	5.64828291263185	0.234794739827622	0.46016529775641	0.814270337828624
Merged-chr19-45651687-3	chr19	45651183	45652183	+	839.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8510.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.34281533634978	4.96507409812803	4.69878478666583	4.763188126562	5.08789576568985	4.96596783658124	-0.19448521281329	0.644462946888946	0.900210434145893
Merged-chr10-59265817-4	chr10	59265318	59266318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43896.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.45019428160392	7.63856078370268	7.31890586703764	7.6692951411144	7.91796475531543	7.53903254390555	0.354225228931747	0.149525026666672	0.515961080764456
Merged-chr13-37880278-3	chr13	37879780	37880780	+	898.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-8154.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.69205300788447	5.83523429943928	5.18618015743585	5.3589308882329	5.08215144245089	4.94434871342774	-0.912486988727367	0.0193143525844298	0.157791718197863
Merged-chr1-149831287-4	chr1	149830791	149831791	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	91148.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.24817741200912	3.8987100790224	4.12275537769658	4.55714042403445	4.19653147983562	4.76267238644809	1.11143255018553	0.0261811651435147	0.192122972860179
Merged-chr13-56613711-4	chr13	56613225	56614225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	4139.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	6.35165873086769	6.50074543583719	6.59350734610895	6.70038909145375	6.85294317981133	6.60193922579708	0.397685760085427	0.134618374024327	0.490439383589701
Merged-chr4-138024851-3	chr4	138024358	138025358	+	970.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	27033.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.99629394360381	4.87927053963687	4.73743985270556	3.74371879294415	3.43363730245268	3.89025163779919	-3.8244892026226	1.27019952864364e-10	1.66704672522681e-08
Merged-chr17-40934621-4	chr17	40934120	40935120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008650)	promoter-TSS (NM_008650)	-65.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	7.39576170666615	7.78991208044323	7.36705000579913	7.69294794654261	8.01446676772319	7.31904904477985	0.259144361556508	0.363977440848911	0.749389689170984
Merged-chr13-92986085-3	chr13	92985574	92986574	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87230.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	4.11811650964958	4.04379987620364	4.34953918281332	5.98336457726612	5.70342883097764	5.40631439884716	3.65863644729965	6.34213627897837e-16	2.08583587154637e-13
Merged-chr12-75759797-1	chr12	75759297	75760297	+	553.0	f1_c57bl6.idr	Intergenic	Intergenic	-24068.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	2.34399473327851	2.37566585632073	2.39993505457103	2.40333364096221	2.27205447123993	2.53710724812075	0.195815350245871	0.811740526719171	1
Merged-chr15-64087839-2	chr15	64087339	64088339	+	677.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-27391.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.27711974575224	6.55974540106728	6.61796563022018	5.75320230377464	6.2531160571148	6.39130901804109	-0.547125431396301	0.0885683012110753	0.39508879039142
Merged-chr17-23976709-2	chr17	23976213	23977213	+	668.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1483.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	3.70181361527753	3.61096052302542	3.71340760503234	3.93334955518901	4.03569074111097	4.21167187345663	1.22282187519971	0.0192098938938953	0.157293529927499
Merged-chr5-99232681-2	chr5	99232181	99233181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	MTE2a|LTR|ERVL-MaLR	20246.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.82085655605805	4.47130094609806	5.18673656344575	4.99603599600091	4.72647585540967	5.15913488966173	0.256458395614495	0.563277847322054	0.865926383742263
Merged-chr14-57407902-1	chr14	57407402	57408402	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-9419.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	5.98271583591384	6.04181982182091	5.36769954012565	5.46275674855933	5.23950360538337	5.29730948541105	-0.952649254217106	0.00909555494134306	0.0942611702029236
Merged-chr12-112630675-2	chr12	112630175	112631175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	10628.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.0302540954489	7.0257467554447	7.18686811997307	6.94157155308439	6.87428928672865	6.46575200066271	-0.445947287473963	0.0974073912331614	0.416135657941618
Merged-chr9-59750078-2	chr9	59749578	59750578	+	961.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	571.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	6.97550181356306	6.83384530738679	7.08011432378172	7.08302681119241	7.60915858338108	6.7082348069643	0.359343547733845	0.250117590884766	0.647307401971844
Merged-chr16-11349459-2	chr16	11348959	11349959	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 2 of 20)	intron (NM_028964, intron 2 of 20)	26555.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.54248737369518	3.73488403501359	3.57883243252653	3.58560734704549	3.0178630107196	3.37053968793824	-1.03793740594864	0.115601426841488	0.453960239965384
Merged-chr19-55253777-5	chr19	55253223	55254223	+	973.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027976, exon 1 of 22)	5' UTR (NM_027976, exon 1 of 22)	354.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	8.48573528105264	8.77996899779332	8.43083178388033	8.51958322946629	8.73918059357691	8.35582110678744	-0.0350934493068629	0.879693454751784	0.972196331768953
Merged-chr6-129211559-3	chr6	129211075	129212075	+	926.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26470.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	3.95487444597086	4.06222786078513	3.87538975259036	4.04832132336204	4.2344027265741	4.36472121148279	0.706170331625205	0.151302090101975	0.518604873061656
Merged-chr15-78862515-4	chr15	78861999	78862999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-6970.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	6.82556747469504	6.63095202051406	7.0493940163425	6.8146778861126	6.89327786715349	6.96496873615353	0.0821946158289219	0.754188099327695	0.938763812961627
Merged-chr2-165317085-4	chr2	165316582	165317582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	-731.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	7.31920580329049	7.38973011224129	7.17518772960265	6.94931552028006	7.1995433474845	6.83082000385961	-0.433245019111937	0.0873953323210255	0.39195026111196
Merged-chr5-124476002-4	chr5	124475507	124476507	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	2228.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	7.72052836728575	7.18515971119574	7.48734317079639	7.78701568161288	7.79564065984432	7.47161368781835	0.311670964437393	0.235616229138802	0.631841167422156
Merged-chr11-58211125-4	chr11	58210620	58211620	+	972.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3857.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	6.25105190486827	6.07896791599103	6.42633554489388	5.40994884094415	5.09190941241791	5.40302003181794	-1.74500207582713	1.37704681573138e-07	9.48520790094176e-06
Merged-chr9-70658246-2	chr9	70657746	70658746	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	4.37279769376603	4.36764904416851	4.51369177480672	4.18402718328257	4.5856708322492	4.80288761752799	0.320614751720079	0.489137345189839	0.829459847891797
Merged-chr15-6388671-3	chr15	6388109	6389109	+	672.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	1861.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.63051707010378	6.00654206979901	5.70892313439399	5.46435738691013	5.2296565227419	5.36865781456546	-0.838105314040113	0.0136465627713758	0.124629919337135
Merged-chr6-22409077-4	chr6	22408603	22409603	+	911.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53022.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.08753659969356	6.24663345515947	5.93836702350144	6.05733324902041	6.24334781030901	5.70583124425126	-0.114863614854881	0.720417694670302	0.928155640080294
Merged-chr5-139409602-4	chr5	139409072	139410072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3185.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	6.52265979829951	6.48941705044351	6.5516566800152	6.06036725093203	6.13857041725091	6.4924865351385	-0.472156992748883	0.0975116113753289	0.416374769100618
Merged-chr13-54218469-4	chr13	54217956	54218956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26323.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	4.83975749159403	4.23066282265945	4.71735414034765	4.9431182710017	4.82645613120368	5.22241305278444	0.856974196733025	0.0571826981108143	0.308454786810449
Merged-chr11-107335933-2	chr11	107335433	107336433	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	134787.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.0338863025826	5.76939965505506	5.42754432051753	5.78838999008603	5.84464281582138	5.98047928926909	0.15789392281949	0.63984630488478	0.898237470253286
Merged-chr2-32428693-4	chr2	32428190	32429190	+	848.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	2461.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	3.06786095335792	3.17786240302924	3.22819553687999	3.10793987714156	2.84654849423455	3.12996674099855	-0.579866791825323	0.38927552378882	0.769015431167891
Merged-chr4-88763585-4	chr4	88763096	88764096	+	922.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	2822.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	2.09801139243806	2.12694647935231	2.19453798170433	2.59534474927235	2.83929754193972	2.55165035089499	5.16727391579328	0.000126641546441172	1
Merged-chr19-29250288-2	chr19	29249788	29250788	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1515.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	3.09325888535466	3.09550635230649	2.98930578621689	2.97117321756497	3.07694224580247	3.29102104717768	0.227755431400111	0.732224367470356	0.931723932448277
Merged-chr9-90431147-4	chr9	90430660	90431660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.70746168283918	3.83016092438987	3.7666274029909	3.6618827511604	3.58566110789424	4.19871782652667	0.207762501760739	0.716628043921994	0.926727756485089
Merged-chr8-79373988-2	chr8	79373488	79374488	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	25480.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.40228560269402	6.53860027364281	6.50662744090529	6.52501045922759	6.60135298183972	6.49467404711223	0.0997664352987883	0.702793670832178	0.922000148631826
Merged-chr14-76964716-1	chr14	76964216	76965216	+	669.0	f0_balb.idr	Intergenic	Intergenic	71901.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	4.54872752291947	4.81839788621669	4.09975124287677	3.60196317734684	3.42144464836431	3.79421306994957	-2.97558506990496	5.46314033427036e-07	3.17442025791877e-05
Merged-chr7-125553350-8	chr7	125552851	125553851	+	905.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	1069.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.04038224072926	6.29464967171576	6.13168502220845	7.27968341918923	7.29406366451539	6.9174075596733	1.60520578148397	5.68050779748584e-09	5.45801030962127e-07
Merged-chr4-88436803-4	chr4	88436255	88437255	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 2 of 6)	intron (NM_025760, intron 2 of 6)	2171.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.25984658993166	4.82003135003194	5.01218996918389	5.62853030806788	5.67380408289394	5.00181620078455	0.867340023926146	0.0332025318840978	0.22225047240079
Merged-chr11-106786399-2	chr11	106785899	106786899	+	896.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355676, intron 4 of 13)	intron (NM_001355676, intron 4 of 13)	2095.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	5.20170775436806	5.11939855344741	5.106432529629	4.98740010771444	4.99922032217126	5.44308707941944	0.0048654360223896	0.98974697769888	0.997611022725407
Merged-chr1-152608987-4	chr1	152608489	152609489	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	16228.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.13746686452379	5.76550492419517	5.59665734744021	6.13656272555846	5.84090041994375	5.8787955126055	0.165531498278485	0.620340352305005	0.890068302891401
Merged-chr2-117231444-4	chr2	117230955	117231955	+	963.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18284.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	2.92019085753832	2.69154211885269	2.92011572009192	2.77650234964209	2.5841927971765	2.81344662095592	-0.640019694803888	0.389980729695799	0.769401696657453
Merged-chr11-70499843-5	chr11	70499371	70500371	+	908.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5403.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	7.98049975598251	7.96079002129529	7.78281387491388	7.66296694268098	7.73998782676928	7.5622663371142	-0.364154255632447	0.09926023936574	0.42004541385646
Merged-chr10-59880438-2	chr10	59879938	59880938	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	847.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	6.41187217973304	6.63909979962302	6.74582097639608	6.87933567218599	6.75322598847665	7.03847331548986	0.451961447369899	0.0911122813536161	0.401699290355094
Merged-chr3-27283547-4	chr3	27283062	27284062	+	952.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33515.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.38360840176598	5.26760137148222	4.98349851418661	4.80662552444071	5.00351556998124	4.85708496319304	-0.705509882368592	0.0660533588604925	0.335455046616916
Merged-chr16-32419659-4	chr16	32419167	32420167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025329)	promoter-TSS (NM_025329)	-35.0	NR_154990	66061.0	Mm.302693	NM_025329	ENSMUSG00000014075	Tctex1d2	0610012D17Rik|2410011K15Rik	Tctex1 domain containing 2	protein-coding	4.93451213362573	5.28052049489767	5.17501084874843	5.27712688568266	5.19840576985202	5.73470260172537	0.550102148104863	0.153950127267206	0.523087753015605
Merged-chr5-145180857-2	chr5	145180360	145181360	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 7 of 7)	intron (NM_001291249, intron 7 of 7)	10732.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	3.18235957115434	3.1000047319544	3.38778906295342	3.12164720126006	3.01282697905996	3.18853231482678	-0.51408502081596	0.429182969563602	0.795655168027537
Merged-chr9-50775405-4	chr9	50774993	50775993	+	972.0595089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133981, exon 1 of 15)	exon (NM_133981, exon 1 of 15)	268.0	NR_045601	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	5.81230452066029	5.82350139087716	5.53254236435214	6.04991687881041	5.80152009432964	5.53485693628529	0.148872563583467	0.657745204289369	0.904859102731141
Merged-chr10-127662986-2	chr10	127662486	127663486	+	971.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008668, intron 5 of 6)	intron (NM_008668, intron 5 of 6)	3717.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	4.45503345871615	4.39113963653729	4.88146863044576	4.60865422098372	4.81230858823981	5.04340951474404	0.576229391264087	0.192022626774485	0.57896940713307
Merged-chr9-95557531-4	chr9	95557018	95558018	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2299.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	5.47605461586438	5.67160593491228	5.4700917895808	5.73233876546192	5.5676863986524	5.56271682109485	0.141370812507176	0.663930048583767	0.907439161928906
Merged-chr5-21363481-4	chr5	21362995	21363995	+	821.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	L1MA5|LINE|L1	-9178.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.65996339402798	3.54417859131516	3.76356899757908	3.82838037968184	3.8369367846523	3.67655039825032	0.447867847570433	0.406706804674407	0.78101222717166
Merged-chr10-61147672-4	chr10	61147177	61148177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316674)	promoter-TSS (NM_001316674)	7.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	8.4628146495774	8.17200702652779	8.26240004576241	8.38732475664595	8.2618358070465	8.13329260795011	-0.0544115097803698	0.804874874862599	0.953680804534576
Merged-chr9-111562794-4	chr9	111562305	111563305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	123724.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.48929223744583	5.38849803907242	6.02099402394789	5.62167110138919	5.79426836666015	5.90878013557717	0.234739788272445	0.509621949971039	0.840445299624642
Merged-chr19-5038857-4	chr19	5038362	5039362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	36.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	6.21132865536551	6.49289474269167	5.62273137007055	5.88770066579668	6.36993058695817	5.86023628031704	-0.165959740585335	0.658075307380853	0.904937992416562
Merged-chr11-98926041-2	chr11	98925541	98926541	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11655.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	2.71646688518533	2.50390164606014	2.77525759055111	2.73653492398395	2.43169703066732	2.90696618961509	0.184053415965007	0.818918834446089	0.95713841971837
Merged-chr7-102441722-4	chr7	102441222	102442222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	27.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	5.55558359750008	5.7810010354982	5.84602504699423	5.93490571615434	5.61964478485275	5.47160267543383	-0.0611650102058839	0.855709250215689	0.966244542232428
Merged-chr8-79640142-4	chr8	79639644	79640644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	CpG	468.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	8.26403239167412	8.50393296150744	8.12043036937964	8.35294041725157	7.95205714082503	7.96940573948304	-0.286035574197459	0.241306538683494	0.638385260200477
Merged-chr9-120936519-4	chr9	120936020	120937020	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	2942.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	5.47458248051375	6.0143543755665	5.68497259579016	5.53614802779928	5.45750480734688	4.95210273296659	-0.744814783713734	0.0555699363557837	0.30322403202125
Merged-chr3-60531460-4	chr3	60530974	60531974	+	961.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	30295.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.84490078138024	5.93366882627779	5.73674206427198	5.40999417507022	5.42302144250447	5.39856100515723	-0.809417675117844	0.0108848512813816	0.106666671230856
Merged-chr16-32144127-2	chr16	32143627	32144627	+	693.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347182, exon 2 of 2)	exon (NM_001347182, exon 2 of 2)	21467.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	2.53158199675936	2.38925635540407	2.76692717128031	2.36891028607592	2.47217350608747	2.66318203184993	-0.368120296591239	0.654150468667612	1
Merged-chr11-30786728-4	chr11	30786231	30787231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	14956.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	6.18168475372476	6.14664118309886	6.23344193481448	6.51072882039908	6.55767636937205	6.23105345010061	0.439651351899219	0.115707861337208	0.454078183565836
Merged-chr15-62056606-4	chr15	62056102	62057102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	17345.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.56735398161125	7.67769860083575	7.63058305741385	7.51697128221041	7.73095719479439	7.33674999058427	-0.113263240112083	0.632979447338237	0.895817001600499
Merged-chr2-62638828-4	chr2	62638316	62639316	+	726.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027835, intron 2 of 15)	Lx9|LINE|L1	7439.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	3.26386121060625	3.45702737757421	3.33775581293727	3.52844662000048	3.56151169614425	3.52204054564871	0.679014990289572	0.247492562975853	0.644448792993109
Merged-chr15-94566065-4	chr15	94565560	94566560	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 10 of 11)	ORR1D2|LTR|ERVL-MaLR	22400.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	3.38084551840966	3.91673938469185	3.89872539613678	3.76137229411938	3.83680040963872	3.8208366702398	0.168432142970644	0.771342509666215	0.943614978016208
Merged-chr8-107293962-2	chr8	107293453	107294453	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001286260, intron 1 of 12)	CpG	483.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	7.52716686856577	7.26185812760346	7.38833645333058	7.47016535280911	7.26470156158783	7.32485222150936	-0.0624885600355314	0.792552288729328	0.949977808464961
Merged-chr2-14192236-4	chr2	14191743	14192743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	17719.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	5.24489298417735	5.46578755952205	5.08143287406738	4.88112201240615	4.84336226021406	4.719610105603	-0.981166380518467	0.0104298059166273	0.103482041679224
Merged-chr10-19526523-4	chr10	19526024	19527024	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31881.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	4.4271904928754	4.43863603642425	4.39401866099105	4.57248266446295	3.86809139446137	4.03121422527952	-0.592237045755578	0.253018433968431	0.6503932065256
Merged-chr14-73123957-4	chr14	73123465	73124465	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18545.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	5.46955742138251	5.65334505773602	5.54649763327371	5.21637637169331	5.14177366580904	5.6866729118892	-0.394515721098569	0.275505511813653	0.67303551354894
Merged-chr18-34857828-3	chr18	34857339	34858339	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3368.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.90592623862095	5.62359901434481	5.94992056426805	6.88111509661943	6.88841977194725	6.54885716223915	1.59308360103244	5.06915010785799e-08	3.93831785410502e-06
Merged-chr11-22873498-6	chr11	22872865	22873865	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13029.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.6901335972685	4.92570056649901	4.99688588205724	4.87823799157533	4.81173089582837	5.06082716374985	0.0906916889663435	0.817646865666501	0.956767881392089
Merged-chr15-78572795-4	chr15	78572290	78573290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-7.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	7.78023594773382	7.86183533299193	7.49630167070617	7.96989446652661	8.1200903568311	7.48855448894252	0.241134510806788	0.367915624605918	0.752923975674939
Merged-chr2-51972287-4	chr2	51971781	51972781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	927.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	7.05009197165531	7.29664707803568	7.07357250292816	7.14434532244579	7.34257268102921	7.33462371267148	0.191655063730978	0.431524707599646	0.796911573849146
Merged-chr2-46371208-4	chr2	46370711	46371711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	674606.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.30250431075834	6.25694350179012	6.35025632172617	6.44214336191825	6.53959008018993	6.22832344768521	0.195818172694208	0.478508842833963	0.823834402333981
Merged-chr6-85433676-2	chr6	85433144	85434144	+	629.0	f0_balb.idr|f0_c57.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	1668.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	6.28261367860947	6.33041881147767	6.81142871288439	6.88380586874607	7.18401570955413	6.61853093113574	0.690133988327594	0.0251728191491848	0.187837856314714
Merged-chr3-139012590-4	chr3	139012096	139013096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286759, intron 4 of 14)	intron (NM_001286759, intron 4 of 14)	62605.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.37301562176217	4.70186306796402	4.70324406705354	4.72675020422934	4.62198388311479	4.38950600803264	-0.012680321170298	0.976920976753437	0.994769134402338
Merged-chr11-69991560-4	chr11	69991073	69992073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026017)	TTS (NM_026017)	203.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	8.44789755690556	8.50048717061438	8.20332320209124	8.39022467704092	8.70108050987886	8.29159048437877	0.117857162429752	0.612166740386709	0.886573086888594
Merged-chr5-115532135-4	chr5	115531644	115532644	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	25468.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.89830138460376	5.66038968867787	5.87734209432669	6.07377683144764	6.06215534668138	5.6168786346932	0.236423788817844	0.466469246902066	0.817586753758551
Merged-chr9-35118839-4	chr9	35118334	35119334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-1970.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	6.67681721060838	6.65173435061815	6.89534568903571	6.91952121254222	7.13687331677259	7.15922042286941	0.520285812828807	0.0405542951774162	0.251018507261954
Merged-chr7-113612801-4	chr7	113612315	113613315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-47828.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	5.61719349205562	5.88186401382931	5.54744624511611	5.61743165024961	5.61015147312836	5.42840616449538	-0.25498755705072	0.440604389244073	0.801886710894642
Merged-chr17-34142082-1	chr17	34141582	34142582	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	-3334.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	4.06836513704047	3.94581855555801	4.05294039578418	4.24210386941829	4.44866747489089	4.39485491626956	0.960048569553023	0.040402703857609	0.2504341613963
Merged-chr19-21737732-4	chr19	21737240	21738240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40600.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	7.02535266783794	7.24798564894402	6.95872131528661	7.15113564747894	7.39088731655832	6.9147857498689	0.134564071677737	0.612917952404057	0.886969289870611
Merged-chr9-57762718-4	chr9	57762239	57763239	+	784.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3121.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	4.81996043319804	4.68709132891601	4.93085855066146	5.09667115047818	4.97066230052796	5.25633852739699	0.643633987479884	0.0938160742456592	0.408020484310726
Merged-chr4-129033731-3	chr4	129033220	129034220	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24551.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	8.2172661347557	8.03638473931199	7.76217592346997	7.9924225403851	8.32723062670363	7.72691710884862	0.0340744345932824	0.897915347417384	0.976203569973289
Merged-chr6-6578578-4	chr6	6578035	6579035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009169, exon 1 of 3)	exon (NM_009169, exon 1 of 3)	123.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	8.25172063292404	8.67056177984436	8.18821934999267	8.24930367054634	8.36958220351264	8.37526561663789	-0.0866644606522293	0.713547763288046	0.92557476402444
Merged-chr2-4555427-4	chr2	4554917	4555917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-4337.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.31567941317076	6.5328586846826	6.32547270862827	6.46839551448141	6.64207657844996	6.58652460497892	0.273250520478326	0.311699356670847	0.706661219276003
Merged-chr6-38533678-4	chr6	38533182	38534182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	7.73229961301977	7.9139899148402	7.71251869481042	7.70265848416007	8.28913762778977	7.7866663488106	0.243914337830346	0.350108260785408	0.738177163457543
Merged-chr5-77015999-4	chr5	77015482	77016482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027970)	promoter-TSS (NM_027970)	-41.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	3.12875162564874	2.95987023858377	3.19770649807165	3.15937043927675	2.84782212819852	3.03824527476584	-0.350142315715054	0.608559511251703	0.885006356798728
Merged-chr2-153241458-4	chr2	153240957	153241957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018807)	promoter-TSS (NM_018807)	-75.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	8.29516751634937	8.08992596041233	7.95349492904333	7.99788260293503	7.72383786743576	7.93230531962186	-0.338235857364628	0.142493341018321	0.503849478134135
Merged-chr8-117482478-4	chr8	117481974	117482974	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-15801.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	6.07294442254515	5.7804629024162	6.39855755874056	6.23508947662366	6.67144513702429	6.34759876085789	0.568200668592013	0.0807364864798046	0.375953974313704
Merged-chr13-102692651-2	chr13	102692151	102693151	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-896.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	6.94036808689651	6.59532025178877	6.94056800365742	7.21527563149353	7.34640641181247	7.13060084371425	0.620503705173538	0.0159249139657462	0.138577728640641
Merged-chr19-5572934-4	chr19	5572455	5573455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4931.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	7.20860292841694	7.44378016627737	7.4294872112493	7.26645787763016	7.57671764935597	7.31336327279166	0.0542817636453033	0.824872847945048	0.958596193929081
Merged-chr5-142400368-3	chr5	142399898	142400898	+	758.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1099.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	4.9553972608003	5.31216634082395	4.97728434255099	5.37744950757359	5.7221913049609	5.50604102888796	0.884391974629698	0.0168248066922231	0.143939802102252
Merged-chr4-128609433-2	chr4	128608931	128609931	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177758, intron 1 of 7)	intron (NM_177758, intron 1 of 7)	667.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	4.00982015076679	3.69195730991034	3.9555028574821	3.89520349693666	3.6376957667817	4.28539555668279	0.20126351058599	0.7209563554527	0.928324696220711
Merged-chr9-59729739-2	chr9	59729239	59730239	+	670.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	20910.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	5.59028077164609	5.65761786589506	5.8613173668688	5.72710857793073	5.90722666951788	5.945448668439	0.294733124093814	0.346240517815425	0.734515828466387
Merged-chr2-33426143-4	chr2	33425641	33426641	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276332, intron 1 of 1)	intron (NM_001276332, intron 1 of 1)	5183.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	4.09208938729	3.90368709004853	4.07059981837087	3.8514252969242	3.9533298861159	4.1831198930505	-0.0779120881981104	0.87684793357325	0.971407825796496
Merged-chr3-148933315-4	chr3	148932824	148933824	+	975.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	21311.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.53730860763808	3.74958593380258	3.84966630010332	3.663341954436	3.35251539193995	3.32829653984273	-0.910922067299732	0.128728239399334	0.479799601167289
Merged-chr17-42912358-4	chr17	42911860	42912860	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35936.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	7.04511962778539	7.17459979468975	7.17447139198247	7.46892899970009	7.61765504416236	7.39298160898426	0.5504165492202	0.0183579960705201	0.152844920655977
Merged-chr18-9503206-4	chr18	9502742	9503742	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53088.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.52822280600593	5.47041556139179	4.59080674339172	4.93251787455516	4.87766099057861	4.29380208348375	-1.14523970328845	0.206923739238647	0.597718538515663
Merged-chr1-10003611-2	chr1	10003111	10004111	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145692, intron 1 of 8)	MT2B|LTR|ERVL	5525.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	3.69953104302199	3.93364112904799	3.61817863254672	3.57403720251977	3.572543308311	3.57872295029985	-0.648125701061287	0.245382982470271	0.64247410967232
Merged-chr2-120352334-1	chr2	120351834	120352834	+	678.0	f1_c57bl6.idr	intron (NM_178851, intron 1 of 24)	intron (NM_178851, intron 1 of 24)	799.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	5.27312586128907	5.66717994620981	5.33708716210692	5.42462838563792	5.38486615705087	5.57668450165423	0.024756290625636	0.943630634021137	0.987453245208137
Merged-chr10-44658437-4	chr10	44657947	44658947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-199699.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.68435417576441	7.71667341211582	7.51900600413668	7.44913575180451	7.63433870918223	7.47353802426088	-0.17704952417278	0.436231470193329	0.799472869647494
Merged-chr9-61350730-2	chr9	61350230	61351230	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-21636.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.30257924617126	2.9142878257472	3.06057841115245	2.86809897123802	2.83036782476632	2.75659067980579	-1.36904684881384	0.0613559718609741	0.321189538006161
Merged-chr8-119847523-2	chr8	119847023	119848023	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6944.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	2.95262860660992	2.84574288146726	2.80619835209839	3.02926220395885	2.89744497688079	3.11842209653068	0.677655238887422	0.329613676159548	0.721408142613596
Merged-chr14-103468869-2	chr14	103468369	103469369	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44472.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	5.08193852902659	5.01748941503396	4.3975446350593	4.62798786537457	4.42126077450039	4.26545908360858	-1.00545029107553	0.0334808400837508	0.223416675713536
Merged-chr2-91143176-1	chr2	91142676	91143676	+	1000.0	f1_c57bl6.idr	intron (NM_001177719, intron 31 of 34)	intron (NM_001177719, intron 31 of 34)	25032.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	2.27848206348255	2.0451278027114	2.50494924007216	2.47477041558781	2.27292243282385	2.57938347982181	1.00891626217865	0.284027644782938	1
Merged-chr18-9486566-4	chr18	9486085	9487085	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36431.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.75699380902553	6.00677946474082	4.78260772418539	5.43972461956308	5.4964749125561	4.65572506471141	-0.697711558480626	0.471089199118342	0.819882354723057
Merged-chr3-89436931-4	chr3	89436385	89437385	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	181.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	3.57481308959799	3.70291095788944	3.59629087782697	3.42640838662648	3.59423817188893	3.91228196711937	0.0856169303185254	0.8820565642605	0.973002238292341
Merged-chr7-80390319-2	chr7	80389819	80390819	+	756.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-2373.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	3.32818553858087	3.57792759631853	4.00079863221238	3.5689924545552	3.27163196202532	3.54806599215248	-0.676050454307166	0.285651841825789	0.683152802436807
Merged-chr9-44233406-4	chr9	44232906	44233906	+	945.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	640.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	7.47899060519262	7.40531606177673	7.66962974954292	7.76659498264324	7.86539797052958	7.8278935089067	0.441537796070519	0.0484050654514861	0.279049754733476
Merged-chr19-45782776-4	chr19	45782216	45783216	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023799, intron 1 of 15)	intron (NM_023799, intron 1 of 15)	837.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	6.49636818257406	6.85208736234024	6.799085298308	6.7756612647694	6.84800348230211	6.60103735326782	0.04564842856243	0.86589633841736	0.968641640814064
Merged-chr12-95745255-4	chr12	95744765	95745765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53039.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	5.60111866901932	5.68579164043461	5.46792764477493	5.67681474818741	5.75633387095896	5.61910119427232	0.175324779547411	0.581955679655609	0.873484978987509
Merged-chr17-12991305-4	chr17	12990803	12991803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	intron (NM_175394, intron 1 of 5)	956.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	7.47119993284248	7.90039591390989	7.80560570496102	7.6992630777724	8.26694277564341	7.82045460906109	0.316874099400544	0.241141492315744	0.638286260062874
Merged-chr6-42355699-2	chr6	42355199	42356199	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	5871.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	2.78085948095591	2.73495803246158	2.78224629823026	2.75783224036268	2.59680934869085	2.91466270857802	-0.0491466594095761	0.946795955615169	0.988007649185823
Merged-chr2-11442741-2	chr2	11442241	11443241	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-44241.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.25751935677211	5.2770242408651	5.04275273257254	5.22717251135339	4.78332720011116	4.96116137110901	-0.426616842691104	0.268153379571952	0.665308311477243
Merged-chr9-44378018-2	chr9	44377518	44378518	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1472.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	3.30129191482132	2.90224776085471	3.24065689247555	3.30818095737182	3.26275651939887	3.47537459089474	0.774542827956187	0.24405345680796	0.641229541844635
Merged-chr2-122149574-3	chr2	122149073	122150073	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	RSINE1|SINE|B4	1886.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	6.38878468787852	6.54040585553848	6.15965133783512	7.00142279452353	7.13765558376199	6.72456670223812	0.929604757684232	0.00101698016784516	0.0182529952126964
Merged-chr2-128620495-2	chr2	128619995	128620995	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008569, intron 43 of 47)	intron (NM_008569, intron 43 of 47)	28154.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	5.94602420087798	5.98512516911887	5.97849417665195	6.22571310758393	6.30046131883405	6.37148802606611	0.557453761380932	0.0468610575040813	0.274071474857637
Merged-chr18-42275282-4	chr18	42274790	42275790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033452)	promoter-TSS (NR_033452)	-63.0	NM_172626	225432.0	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	6.64508082904008	6.6182199662682	6.73420563387294	7.01159338492586	6.85249451922254	6.66346174252433	0.301568282847547	0.244554909929708	0.641966459162426
Merged-chr12-51694255-3	chr12	51693788	51694788	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-2374.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	5.87745484446965	6.14482778315578	6.27242192820134	6.43573972408053	6.33696599319408	6.77658624361865	0.693372514716858	0.0227493134977623	0.175904117686924
Merged-chr7-132303747-2	chr7	132303247	132304247	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	L1MB8|LINE|L1	-11917.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.2351083053308	3.47325578813599	3.32035808772033	3.28993421513112	3.00957321735373	3.33591780072631	-0.552826018923219	0.391207041741362	0.770214029510808
Merged-chr15-95790113-2	chr15	95789613	95790613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-730.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	8.06337865390429	8.12903851406518	7.5907761932725	8.25675012552922	8.5106206771112	7.6876462689636	0.351491758887768	0.235922265451902	0.632261024837056
Merged-chr2-94438231-4	chr2	94437737	94438737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-51.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	6.98259674293669	6.881685357878	6.97610483914618	7.04900022594163	6.61421065259334	6.92455862040827	-0.118536982306354	0.65381288281441	0.903558174250044
Merged-chr3-98051919-3	chr3	98051395	98052395	+	951.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	38357.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.85681045501857	3.85756529461772	4.01850852696203	3.94558740529812	3.85099286154583	4.08597742542887	0.152517422098763	0.762872517219284	0.941663714620562
Merged-chr5-72812480-4	chr5	72811978	72812978	+	955.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55970.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	6.3968577967244	6.66209931602627	6.34558255590802	5.96105346531935	5.87499170832973	6.02601699963418	-0.896059099951776	0.00189522142457379	0.0296601357099853
Merged-chr15-25621666-2	chr15	25621166	25622166	+	899.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-884.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.08156989968121	3.938505025357	3.78219587510772	4.0892465185831	3.76361542558298	4.10327974561935	0.125142626845273	0.811633622848242	0.955304895434479
Merged-chr14-77111487-2	chr14	77110987	77111987	+	929.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310648, exon 7 of 7)	exon (NM_001310648, exon 7 of 7)	-45276.0	NM_001253759	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	2.41790269340837	2.86083466624753	2.533558299922	2.68739779192718	2.48732660984671	2.73644376304706	0.0931282652330101	0.91007409254349	1
Merged-chr4-116631124-4	chr4	116630622	116631622	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3171.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	5.26565838679159	5.21176374861658	5.09525022773692	5.01084847370676	4.79953668266053	4.65390718360885	-0.776349650074364	0.0433167155595481	0.261408273011233
Merged-chr12-98269845-4	chr12	98269342	98270342	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	1207.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.84062064287935	7.96794561828925	7.5964405515875	8.18983761385124	8.33300277781762	8.22350936009773	0.613508098926841	0.00661581413350849	0.0749780253910344
Merged-chr16-91399722-2	chr16	91399222	91400222	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010509, intron 8 of 8)	intron (NM_010509, intron 8 of 8)	-6513.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.72071593846942	6.5694112456461	6.76257429715369	6.67043273390646	6.64156034953096	6.22068525164971	-0.229676097519762	0.414769360477992	0.786019635735451
Merged-chr14-47355337-1	chr14	47354837	47355837	+	630.0	f1_balb.idr	Intergenic	Intergenic	-18523.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.00567672820087	3.83354861910167	4.21796948973672	4.11499900835544	4.09282626253898	4.28482638376668	0.412266977105707	0.404833967466084	0.779791650050306
Merged-chr9-103234229-4	chr9	103233728	103234728	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3942.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	5.67360438461088	6.13113933556523	6.35414155003168	5.88312673868915	5.78242944048821	5.8809986796292	-0.397941828540517	0.235405379246916	0.631597709612866
Merged-chr17-24151997-2	chr17	24151497	24152497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1075.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	2.66484388247249	2.89570266402765	3.1253159661386	2.81625929248358	2.72077579332242	3.14230939645043	-0.0177118526312031	0.981313762582694	0.995690081075595
Merged-chr11-54619102-4	chr11	54618590	54619590	+	958.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 7 of 28)	intron (NM_001252494, intron 7 of 28)	22944.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	5.06533966091722	5.24278690484266	5.34875004907108	5.15583112350251	5.23961824709636	5.3820975199198	0.0808324918935771	0.820411352336034	0.957629072297684
Merged-chr1-181170447-4	chr1	181169934	181170934	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19503.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	6.37536846605006	6.41266517235875	6.2819505860333	6.33476032258255	6.35613600637476	6.49191214263793	0.0474747422660622	0.860106186382854	0.967441103100897
Merged-chr5-140596694-2	chr5	140596194	140597194	+	764.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-10647.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.90538400314019	6.69903425580519	6.39668601613843	6.79395856226081	6.5728019662504	5.97031283796864	-0.299328155745121	0.374671325045601	0.758118627242714
Merged-chr15-27628700-2	chr15	27628200	27629200	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	1993.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	3.79279011619022	3.80764017584342	3.55227039736853	4.04608570382964	3.42487936522601	3.7369766234525	0.111490970113383	0.851785626663467	0.96531854415899
Merged-chr7-45053379-4	chr7	45052830	45053830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-449.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	7.12428208271035	7.32451163891382	7.3871033112447	7.47514669620595	7.44963834209104	7.4546229383351	0.266653555743324	0.250060282032723	0.647283121185894
Merged-chr6-122595074-2	chr6	122594574	122595574	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031159, intron 3 of 7)	ID|SINE|ID	7370.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	4.25388098461389	4.69067361253731	4.50701173551599	4.57514438171631	4.71658520179476	4.80851313901539	0.485207750494758	0.269034835854123	0.666194755066135
Merged-chr6-83436736-4	chr6	83436239	83437239	+	896.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	4939.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	3.93094308370274	3.83448523984449	4.21870573413766	4.09885858137472	3.89335138973677	3.86421274009679	-0.114040597270815	0.825521116482821	0.958821343666982
Merged-chr10-127123622-4	chr10	127123111	127124111	+	760.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2451.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	2.02932091599455	2.0994559264122	2.23383839372926	2.07110184924963	1.93704851236157	1.97558541136049	-0.989996257392208	0.291450248520291	1
Merged-chr17-17583509-4	chr17	17583009	17584009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	40980.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.9343275800847	5.02345642386879	5.46957867078542	5.55366202398476	5.58772830233691	5.26112159690369	0.664402398166214	0.0784572163912949	0.369915461326318
Merged-chr3-108018011-4	chr3	108017515	108018515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-42.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	7.82210800765525	7.82257451769784	7.32072790962201	7.08023699965032	7.52756773436887	6.99960846147924	-0.655193051771866	0.0222807596469892	0.1734227363244
Merged-chr7-36730843-3	chr7	36730412	36731412	+	705.233337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	(TCC)n|Simple_repeat|Simple_repeat	32794.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.06232606617262	3.18735238601739	3.1942662667233	2.5115007563888	2.49100781708539	2.6626912824168	-4.08471530010381	6.98906679578104e-05	0.00208663893054664
Merged-chr6-73239047-1	chr6	73238547	73239547	+	562.0	f0_c57.idr	Intergenic	Intergenic	-9458.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	2.9340019117885	2.9978645516982	3.00900584234181	3.26769015846864	3.42520764813948	3.53260478975609	1.88563568127473	0.00455830344082956	0.0573548030703986
Merged-chr7-45241151-2	chr7	45240651	45241651	+	969.589294	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001324535, exon 1 of 13)	5' UTR (NM_001324535, exon 1 of 13)	398.0	NM_001324535	381884.0	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	4.47339638828603	4.9053418638398	4.63429982027897	5.00771018777862	4.90689295826904	4.43065276394101	0.287763205045218	0.523700842366203	0.848390706863314
Merged-chr15-59079146-3	chr15	59078652	59079652	+	796.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	2874.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.60036567546416	4.51877922595574	4.74286807572926	4.15566947799378	4.00292433350116	4.19276647346114	-1.34979004906736	0.00312356346718284	0.0434493049782285
Merged-chr3-20006756-3	chr3	20006248	20007248	+	717.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276248, exon 20 of 20)	3' UTR (NM_001276248, exon 20 of 20)	28562.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	5.23883582094829	5.30970757188633	5.45399667936594	5.36119842438612	5.76504736249634	5.48785710511152	0.44146959721848	0.204896078962716	0.595580073300188
Merged-chr3-88172354-2	chr3	88171854	88172854	+	765.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133665)	TTS (NM_133665)	5431.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	2.88839024868978	2.77467780825003	3.29702329060129	2.87982705892847	2.49072133811506	2.80793408128801	-1.32688221039365	0.100879093124742	0.42355169950164
Merged-chr8-35499045-2	chr8	35498545	35499545	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3512.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	2.38698424850152	2.31953316787997	2.71816245701735	2.57757595406502	2.50621508644069	2.73203330229066	0.728603886053994	0.37716781274398	1
Merged-chr14-67716921-3	chr14	67716399	67717399	+	620.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	801.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	5.04738933097126	5.04416369497435	5.25623502980391	5.09126176393228	5.08371321562255	4.91090017344367	-0.155754315366931	0.673237502892099	0.911318466579564
Merged-chr5-21043086-4	chr5	21042607	21043607	+	911.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-7860.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.44219764168476	4.22699298985677	4.43859382633041	4.68416062725852	4.89983730726978	4.63352556916596	0.940387320999943	0.0284470244515258	0.201922249222596
Merged-chr2-144268799-2	chr2	144268299	144269299	+	946.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1773.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	7.47015229780077	7.96148346507177	7.38131991863876	7.91665452644382	8.36589719184946	7.34342374756515	0.451654820764922	0.169260312344279	0.545964641046737
Merged-chr18-62047184-4	chr18	62046681	62047681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94106.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	7.25460900401605	6.98462643611998	7.04817481344139	7.00013768133126	7.17780611255109	6.92645928858995	-0.0858107445116273	0.733047085688594	0.931985446585439
Merged-chr4-46558882-4	chr4	46558368	46559368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	7572.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	7.67983151840432	7.12500854988455	7.33796762775598	7.06305821943943	7.12156731787639	7.02929208820791	-0.493602359214409	0.0627686841009318	0.325797309379972
Merged-chr11-104382095-4	chr11	104381594	104382594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	B1_Mur2|SINE|Alu	60197.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.48167661933219	5.35314827995261	4.94548761707284	5.16940127654115	5.07819258170449	5.05025116865912	-0.391487065657326	0.300932265849493	0.697653874358754
Merged-chr11-106161277-2	chr11	106160777	106161777	+	896.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356458)	promoter-TSS (NM_001356458)	-548.0	NM_001356458	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.19425592113602	2.89217131178505	3.04208386535961	3.03694010444203	2.91867088805499	2.93215361810638	-0.398287879067799	0.562088003871029	0.86560636450104
Merged-chr8-47940613-3	chr8	47940099	47941099	+	758.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	49952.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.59440573728227	4.64379075757737	4.79718247695641	4.68004292318337	4.64496761589082	4.71195755326787	0.00554567236967268	0.989050522527139	0.997508825363283
Merged-chr11-54439993-2	chr11	54439493	54440493	+	600.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	L1ME1|LINE|L1	1814.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	6.88161116864971	7.10704574753687	6.29995647488049	6.81822415545002	7.01237918420666	6.19957611861687	-0.129114218252349	0.717379222339155	0.927076744255772
Merged-chr3-94621906-1	chr3	94621406	94622406	+	554.5	f0_balb.idr	intron (NM_001293728, intron 8 of 11)	intron (NM_001293728, intron 8 of 11)	36966.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	2.59897150226244	2.71272940985707	2.6752283735714	2.28502588020355	2.26072523971564	2.43265214040556	-2.36645243031162	0.00833143177349092	1
Merged-chr9-109914436-4	chr9	109913892	109914892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-17382.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	5.10744954165258	5.05964219379751	5.21610634053462	5.13840688030626	4.84397711231762	5.60945254963256	0.198062121746509	0.627613914150528	0.893330206932885
Merged-chr19-37556254-2	chr19	37555754	37556754	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 1 of 21)	Lx8|LINE|L1	5836.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.31074171594612	3.30213814538394	3.25234269255506	3.27885423322418	3.10944970779936	3.32395378779631	-0.228621816500977	0.712569149226678	0.925200183644431
Merged-chr11-20729582-1	chr11	20729082	20730082	+	579.0	f0_balb.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	11974.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	3.16928770069421	3.38020914111275	3.42212278431472	3.24485099755806	3.13961690826686	3.2735563848751	-0.445270769572637	0.476243773120142	0.822450123983661
Merged-chr14-76402417-3	chr14	76401920	76402920	+	881.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12541.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.85451585132599	3.86841556093777	3.73587897075217	3.72400314439759	3.98446271474826	3.75300471678517	0.0298828301222682	0.95511258733124	0.989721943182288
Merged-chr17-26691474-4	chr17	26690968	26691968	+	956.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	15072.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	3.9358177674624	3.57991307044412	3.85232937224048	3.72706647482837	3.82001900080287	3.71675959268682	-0.122400426953014	0.822142846793854	0.958041123079214
Merged-chr3-116583288-4	chr3	116582778	116583778	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175413)	TTS (NM_175413)	11609.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	3.70082499077179	3.63921861504049	4.08999903881439	4.05617577645719	4.15146101468861	3.81721639293544	0.637811256188557	0.240449773828122	0.637521740454717
Merged-chr4-137308515-2	chr4	137307895	137308895	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30760.0	NM_009523	22417.0	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	2.01387095226701	1.87382473834284	2.10821277403067	1.77893632537031	1.70233294645646	1.98665985117978	-1.58867048740779	0.134059102415167	1
Merged-chr14-50931050-4	chr14	50930539	50931539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-190.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	8.35787346775339	8.72386047452395	8.24236323361709	8.26519970338886	8.60196107241686	8.07737015949475	-0.17257662101489	0.505333365235341	0.838055364884185
Merged-chr2-71843499-4	chr2	71843010	71844010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008397, intron 20 of 25)	intron (NM_008397, intron 20 of 25)	-29714.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	4.34912277794822	4.26927596573541	4.7333180660259	5.18905726894552	5.46257775173516	5.36885235119737	2.02770214146136	8.43579131384156e-07	4.6732711294416e-05
Merged-chr5-9103742-4	chr5	9103267	9104267	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3030.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	5.60186184488479	5.47233326934416	5.24203899239263	5.73378229557983	5.71875425843848	5.72697595068645	0.498497260414165	0.130398371772308	0.482568746844423
Merged-chr19-8919470-1	chr19	8918970	8919970	+	663.0	f1_c57bl6.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	-923.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	3.74140747206261	3.84431300617453	4.06717888207938	4.22393652204418	4.19423219427673	4.35442881817331	1.09413945455165	0.0271771031826484	0.196315121460299
Merged-chr17-56274711-4	chr17	56274244	56275244	+	810.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	ID_B1|SINE|B4	2023.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	4.29777629019431	4.03205546276844	4.53370187450041	4.52799375176007	4.63410067478243	4.25174232011652	0.503840730363544	0.292363961094597	0.689610289086364
Merged-chr8-71612665-4	chr8	71612264	71613264	+	884.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 2 of 11)	L2c|LINE|L2	1740.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	7.67328191579952	7.69469470719026	7.55125689263347	8.00690976863271	8.23892433028711	7.43673793060894	0.435985766696733	0.114731361883558	0.452208192866616
Merged-chr1-192137493-2	chr1	192136993	192137993	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290278, intron 1 of 10)	CpG-848	547.0	NM_001290278	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	5.51509161701435	5.50298715509188	5.91312242828332	5.50149656584099	5.30413442055253	5.41180617159104	-0.457520193896727	0.185857860902575	0.570175160932842
Merged-chr9-59659545-4	chr9	59659064	59660064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3196.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	6.03217977263641	6.17979282332414	6.43216881611692	6.09486172515989	6.22594281280582	6.05631002704162	-0.137807035519671	0.641771261340524	0.899171520014446
Merged-chr9-14843121-2	chr9	14842621	14843621	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-17089.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	2.83976689942255	2.97162493971912	2.85320790830663	2.93095218399362	2.7759469713816	3.15918724815987	0.317540363148823	0.655411811742048	0.904253611535387
Merged-chr14-55014601-2	chr14	55014081	55015081	+	858.833374	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-873.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	7.52579894898624	7.86578648218421	7.51390163178971	7.40059635305962	7.69713886308467	7.56084578936755	-0.1297949217692	0.598602300868783	0.880808927175713
Merged-chr2-4446786-4	chr2	4446272	4447272	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45796.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.16518061090156	4.72449809788967	4.84103029523278	5.34759144691076	5.20953367008212	5.12942925395133	0.639043684268827	0.100084046473197	0.421938153667821
Merged-chr6-72098145-3	chr6	72097640	72098640	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	532.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	7.35680091285926	7.45625716296504	7.47258171929763	7.69526534032651	7.67030826168484	7.17281086247108	0.169848325611964	0.505794865433535	0.838177729332582
Merged-chr12-80436746-4	chr12	80436277	80437277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177267)	promoter-TSS (NM_177267)	-176.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	6.58130145937955	6.36969455329454	6.65688836756046	6.58251953772014	6.24496133685382	6.22281731066495	-0.281800407419559	0.3270906166342	0.719317370353337
Merged-chr4-133093662-2	chr4	133093164	133094164	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36969.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	3.43199587091702	3.73539947804193	3.86911484906983	3.96317927971605	3.87885829936401	4.29047254696086	1.13870640787384	0.0426259283061288	0.258891842517983
Merged-chr8-25519380-3	chr8	25518883	25519883	+	861.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010206, exon 1 of 18)	5' UTR (NM_010206, exon 1 of 18)	624.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	3.71427263505137	3.72251260577736	3.60743459469944	4.00974199441825	3.80140590904521	3.9409527947151	0.741544369425879	0.161406434340729	0.534305640858664
Merged-chr19-4113311-4	chr19	4112834	4113834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276284)	TTS (NM_001276284)	8241.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	7.609493308502	8.06658457556697	7.52016825517099	7.50711944822423	7.95932752873326	7.5566824631977	-0.0924043988929641	0.738460294212805	0.934032187674406
Merged-chr3-88623075-2	chr3	88622582	88623582	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	1688.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.05812013563243	5.83302392633478	6.43519741074873	6.25160373608361	6.02746770615952	6.21815117931403	0.076367365243775	0.81083168032876	0.955096593239846
Merged-chr12-98747463-2	chr12	98746963	98747963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008506, intron 1 of 14)	intron (NM_001008506, intron 1 of 14)	495.0	NM_029334	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	5.85838677895686	5.61327882652698	5.31263893722748	6.25427564722748	5.35493284055457	5.81099595985486	0.446447671484706	0.272081441363523	0.669529543069504
Merged-chr11-4704316-4	chr11	4703819	4704819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	25.0	NM_197979	66152.0	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	5.9238817664035	6.15745856178753	6.06973729651249	6.3976948919244	6.22958375198338	6.01515235143416	0.297980364168899	0.316120062439519	0.710239453367559
Merged-chr1-91413319-4	chr1	91412823	91413823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019479)	promoter-TSS (NM_019479)	-101.0	NM_001360899	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	5.95299244532643	6.25756684082078	6.1868767207988	6.04712133772694	5.8527989905	5.83637777442582	-0.38260741566637	0.205338485134405	0.596047563330878
Merged-chr1-65089213-4	chr1	65088714	65089714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6924.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	3.39425742636704	3.33456030282612	3.34290964124202	3.19464632396224	3.47664637909488	3.52224463528434	0.182142564958502	0.764719209025874	0.94202193945882
Merged-chr17-45585503-4	chr17	45585000	45586000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001199116, exon 13 of 13)	3' UTR (NM_001199116, exon 13 of 13)	6893.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.34417221110151	6.22135639154053	6.73694582071156	6.61326924515503	6.68255946271509	7.03576822593294	0.544139172581724	0.0692763976696596	0.344435917102623
Merged-chr3-96563248-2	chr3	96562748	96563748	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	3553.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.95657414716535	5.35879578456961	5.12290136239135	5.05890747161102	5.21630428404792	5.69490460566134	0.364743623007355	0.361910171014211	0.74753801781726
Merged-chr11-30986423-4	chr11	30985926	30986926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026527)	promoter-TSS (NM_026527)	-61.0	NM_001290667	68044.0	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	5.80144591285498	5.78367371239501	5.69351536860505	6.02790270397352	6.20751710579545	5.96112035982861	0.550599471874081	0.0665121920416371	0.336903749870946
Merged-chr1-43805640-2	chr1	43805140	43806140	+	715.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026430, exon 3 of 15)	exon (NM_026430, exon 3 of 15)	22068.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	4.62340369843297	4.57018656647839	4.81636492246436	4.99023950862309	4.88365452733753	4.72766854655658	0.485075810558663	0.226689910653062	0.6216397220321
Merged-chr9-70848585-3	chr9	70848071	70849071	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86237.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.33792173196308	5.12106927414611	5.38549706399536	4.99322645905586	5.13476607728163	5.23716461123522	-0.32527451504128	0.367952820947608	0.752923975674939
Merged-chr7-19665484-4	chr7	19664997	19665997	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-467.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	6.66319465041499	6.73972156305914	6.80798373740875	7.0514983947854	7.30321720062405	6.63784499946133	0.468847364042575	0.0986702685858977	0.418949620273275
Merged-chr2-128704505-8	chr2	128703965	128704965	+	962.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	B2_Mm2|SINE|B2	5550.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.34446873126765	6.40164496425619	6.27179950228079	6.29429144620047	6.46477161470222	6.61990509785619	0.191227627205846	0.487412096839278	0.828445729506224
Merged-chr18-20751188-2	chr18	20750688	20751688	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4784.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	3.77312840166948	3.89243846019422	3.98410778788939	4.15527672964291	3.89538385166363	3.62829815383212	0.104066148550842	0.848203440013042	0.964318271116593
Merged-chr13-101844231-4	chr13	101843725	101844725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76008.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.92412846017909	6.27011180208506	6.16762560862305	6.18507517405996	6.24598869914217	6.16464510436156	0.123571312401015	0.671721927711342	0.910600165542609
Merged-chr3-95356799-2	chr3	95356303	95357303	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163642, intron 1 of 21)	intron (NM_001163642, intron 1 of 21)	399.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	4.52089793251175	4.58735665245088	4.75741118492391	4.9052575781803	4.80499325171587	4.82294970777008	0.528407489447099	0.186286360776455	0.570803258887202
Merged-chr3-69316738-4	chr3	69316219	69317219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178726)	promoter-TSS (NM_178726)	-199.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	7.57019352496175	7.79326008963837	7.32257649484449	7.55194439730448	7.53479095118737	7.22240883256936	-0.193718627270593	0.450664147175795	0.808443910792592
Merged-chr15-58416056-5	chr15	58415546	58416546	+	869.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	578.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	8.13375084005374	8.06363471959623	7.65655684469857	8.1390801685712	8.11326184805277	7.87439053500141	0.106944337123566	0.660904692537806	0.906196879899247
Merged-chr14-14703631-3	chr14	14703102	14704102	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	CpG	577.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	6.52027103771791	6.72767279268998	6.39423985314804	6.63532506319217	6.1639089137746	6.57989685623269	-0.14959391543652	0.614274397272378	0.887435546271868
Merged-chr19-21273718-4	chr19	21273215	21274215	+	895.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	1437.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	8.4588114351871	8.75809077362031	8.08991901853356	8.32048425905773	8.62886611023956	8.23667790379329	-0.0836915374163291	0.7503707961699	0.937550343416037
Merged-chr9-46098961-4	chr9	46098450	46099450	+	938.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86130.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.13875859961555	5.31517751693454	5.43287327009109	5.22569298244314	5.37259249523278	5.25299031874179	-0.00767938753213045	0.982534549853339	0.996025201140234
Merged-chr3-126746635-3	chr3	126746149	126747149	+	791.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001025438, intron 4 of 18)	intron (NM_001025438, intron 4 of 18)	149698.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.53572172879797	2.49842727914859	2.68964714784503	2.51495105054879	2.53911251044242	2.70215556621279	0.0654819629146456	0.932348091669499	1
Merged-chr2-174329981-4	chr2	174329431	174330431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-139.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	7.56898984695268	7.21141184867423	7.15519332846927	7.57095787336238	6.97760144560206	7.27353849971935	-0.0512232357999672	0.856522518792718	0.966529239953755
Merged-chr6-97396291-3	chr6	97395772	97396772	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346637, exon 5 of 23)	exon (NM_001346637, exon 5 of 23)	63014.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.46827674760203	6.54378239926055	6.66132750073264	6.59784046921159	6.77765011335857	6.83998344349799	0.295441103166384	0.257830529242479	0.655300508619143
Merged-chr16-11909329-4	chr16	11908833	11909833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146067)	promoter-TSS (NM_146067)	90.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	6.06174812359847	6.13843438788319	6.41341795447343	6.45413871405486	6.2046139496026	6.20286812810897	0.150574236974956	0.607576100998808	0.884614829803401
Merged-chr15-59727614-2	chr15	59727114	59728114	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67345.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.14147129549389	5.66462738262363	5.70543029573044	5.7459933470613	5.69700408670798	5.9883801104709	-0.0970221286361592	0.772711298012785	0.943848608021176
Merged-chr17-29487376-2	chr17	29486876	29487876	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.76110966656671	3.51386943226557	3.49537486213284	3.23416210289292	3.0308107282777	3.16606609377041	-1.99634243561915	0.0023574377962927	0.0350096814844921
Merged-chr4-126260164-4	chr4	126259667	126260667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2238.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	7.33303255293084	7.25101283412401	7.23680430819315	7.2078390683055	7.61472490791435	7.46935064783175	0.251303410938981	0.304547098893134	0.700969682849711
Merged-chr2-167660800-6	chr2	167660311	167661311	+	942.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	733.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	7.2498957396217	7.01277508241196	6.84254375543861	7.16085679130475	7.19888026511214	7.00340172880224	0.112546737963939	0.66029036961331	0.905906890165946
Merged-chr2-153213574-2	chr2	153213074	153214074	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11867.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	3.44843014413469	3.33326157993312	3.48218219984871	3.43186105167766	3.18641219128906	3.60392892276862	-0.0404006765238065	0.947404407168044	0.988008807662239
Merged-chr11-58171657-4	chr11	58171211	58172211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175001)	promoter-TSS (NM_175001)	57.0	NM_175001	216767.0	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	4.96025369774615	5.04935525664948	5.07502222670279	5.19405939325269	4.75190483177262	5.139140418349	0.013356330786906	0.972657158111197	0.993868590220018
Merged-chr3-107204335-3	chr3	107203866	107204866	+	812.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	17366.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	2.65565419947087	2.40379320594441	2.5893000178501	2.74218747372745	2.81949036836694	2.91032049948767	1.5134648964119	0.0553999270487154	0.302673481934965
Merged-chr6-124297505-4	chr6	124296990	124297990	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_A|LTR|ERVK	-7161.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	2.94687710686094	3.14736021504474	3.16870642925492	3.04998498327487	2.72819424311261	3.06936614139061	-0.631137776311436	0.373744701786293	0.757546812967132
Merged-chr6-83774994-3	chr6	83774486	83775486	+	893.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009357, intron 2 of 5)	intron (NM_009357, intron 2 of 5)	826.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	4.4094501239918	4.31929820458092	4.24501958735477	4.12529019129289	4.06835697082144	4.39970187812621	-0.367371170768297	0.431932137246466	0.797162418904554
Merged-chr14-17878628-4	chr14	17878131	17879131	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-103013.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.11750271411499	5.1405656557139	5.5265233930709	5.50875896546734	4.92681530009044	5.06936306010502	-0.147682965192963	0.713103134783104	0.925402542756944
Merged-chr13-58452419-4	chr13	58451932	58452932	+	940.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49089.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.01818665427815	5.95283755899875	5.59077905335569	6.26485287529945	6.20884386118941	5.62437262865193	0.343322908979477	0.324948907049168	0.71780685615767
Merged-chr4-3789884-3	chr4	3789464	3790464	+	638.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010747, exon 13 of 13)	3' UTR (NM_010747, exon 13 of 13)	45691.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.65581953835933	2.64958178858935	2.92958077498282	2.73248682578901	2.70945319658545	2.70309972192781	-0.157937492444762	0.831402646368164	0.960444904168444
Merged-chr19-34500962-4	chr19	34500468	34501468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 7 of 9)	RLTR11A|LTR|ERVK	-25833.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.18626966294948	3.18157384520251	2.96133020856518	3.0957230297471	2.98713292090214	3.38050749043479	0.171904948597328	0.800228771608233	0.952428832140568
Merged-chr5-146832993-4	chr5	146832528	146833528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019647, exon 1 of 6)	5' UTR (NM_019647, exon 1 of 6)	138.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	8.16796480795073	8.16264842752391	7.96165015973127	7.97937626482504	8.24033952123585	7.92361220651526	-0.0608494987216056	0.787876599398007	0.94877064431094
Merged-chr9-66907721-3	chr9	66907223	66908223	+	975.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11982.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.58964212715691	6.99389010575219	6.89592213341632	6.4547640740982	6.58741658961675	6.41951337378959	-0.540927771441914	0.049330183294812	0.282313652259982
Merged-chr17-34642854-5	chr17	34642303	34643303	+	786.991638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2080.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	5.25623388560601	5.33572693770526	5.08031070611468	5.40209055140099	5.37912731836619	5.2498505654655	0.224020469576303	0.521180927244647	0.84693755135567
Merged-chr11-69261455-4	chr11	69260976	69261976	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24454.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	6.63337346654767	6.73878470306046	6.5864947215251	6.4427312040807	6.93856255154746	6.40631759802418	-0.0344549540204667	0.906541388380373	0.97877815205411
Merged-chr14-52451312-3	chr14	52450817	52451817	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020514)	TTS (NM_020514)	924.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	3.26524704720624	3.73115807469786	3.6265746210473	2.96160380275105	3.00072838455673	3.08581455874834	-2.36177073177491	0.000798507672150284	0.0151521610910561
Merged-chr1-91063331-4	chr1	91062833	91063833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9889.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.15897195438299	5.25290765412026	5.12406459171077	5.35833855897604	5.25817874610363	5.25544959513848	0.218452133840076	0.529603891333929	0.851008230596217
Merged-chr15-102392590-4	chr15	102392101	102393101	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-13715.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	6.05006172526183	6.18825682927544	5.69885325742212	5.50079281336803	5.84588944198272	5.91558761262979	-0.425863360640969	0.203532357705861	0.593541528054857
Merged-chr11-5785911-4	chr11	5785404	5786404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2579.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	6.61956769674933	6.71908246676673	6.91899246841584	6.89864348793718	7.12609776526608	6.65606579842453	0.259900796749046	0.34376765311937	0.732572352000629
Merged-chr2-84603668-2	chr2	84603168	84604168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007615, exon 19 of 20)	exon (NM_007615, exon 19 of 20)	45812.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.26672653293528	3.43613807065824	3.34123533285429	3.37856107497632	3.75059046125284	3.52588630191233	0.802318852254974	0.184611358411648	0.568347311818612
Merged-chr14-64794880-4	chr14	64794292	64795292	+	746.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 37 of 39)	intron (NM_001081177, intron 37 of 39)	142261.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.55837567247934	3.59625854319305	3.56508301657558	3.05257968387061	3.19542290950997	3.36632408387931	-1.47387892484761	0.0190918202615323	0.156665895495225
Merged-chr16-27413486-3	chr16	27412995	27413995	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 4 of 9)	intron (NM_001025615, intron 4 of 9)	24539.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	3.56688700086639	3.6942553690625	3.78933507388293	3.41894578917678	3.60670893514531	3.65843470159472	-0.410994308056901	0.465645759705835	0.817146354802119
Merged-chr14-29976711-2	chr14	29976211	29977211	+	926.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1626.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	2.56609746310961	2.56758838093009	3.08002674820332	2.6234478076117	2.6971299101224	2.75585698430466	-0.326248024182619	0.680283461096959	0.914210928957366
Merged-chr16-11315372-2	chr16	11314872	11315872	+	721.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011608, intron 2 of 2)	intron (NM_011608, intron 2 of 2)	1563.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	3.50785604273968	3.722516688497	3.82044281118618	3.26163126335853	3.32173163541656	3.59500097181442	-1.07478075712081	0.0739382938750297	0.357481554721294
Merged-chr7-24903666-2	chr7	24903166	24904166	+	925.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	680.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	6.22589708875184	6.66918369067537	7.0380590265559	6.8099017441538	6.93666373688101	7.10796050185833	0.428127136739824	0.170337389302459	0.547723209378173
Merged-chr7-97789375-2	chr7	97788824	97789824	+	762.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	CpG	783.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.55861650903378	5.3454008653384	5.26105528318276	5.77917794294949	5.46233950134199	5.51442699841663	0.363117050167013	0.292276156884432	0.68951252554772
Merged-chr11-100324437-2	chr11	100323937	100324937	+	832.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	4488.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	6.35332067375591	6.21268057563523	6.28554620224167	6.12001372036623	6.38225926508	6.67256038109518	0.195772887043563	0.509512567355104	0.840397282385146
Merged-chr18-67405790-1	chr18	67405290	67406290	+	589.0	f1_balb.idr	intron (NM_027130, intron 16 of 16)	B2_Mm2|SINE|B2	15059.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	3.42423623029397	3.44196113686504	3.22508950914043	3.50121366759293	3.62338837916417	3.53166366911502	0.67363517284488	0.257381526329024	0.654689847126493
Merged-chr18-53232599-4	chr18	53232128	53233128	+	886.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-13034.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.18620565500936	3.10646327213821	3.21016507676905	3.27701883333162	3.31589409282398	3.16469348018325	0.387883093101002	0.536090234682879	0.853869494218966
Merged-chr11-86687567-2	chr11	86687067	86688067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	3486.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	3.48596530673958	3.42340190707806	3.49913846720757	3.37550201387099	3.34932625214249	3.90839618721222	0.331365520842441	0.59018410144002	0.87713052060241
Merged-chr12-113031086-2	chr12	113030586	113031586	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	16578.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	5.05280026109638	4.91683262569604	5.55811677884794	5.07968912641991	5.19126987049734	5.29028708833229	-0.00853344313992851	0.982800277379105	0.996112423018912
Merged-chr11-59208730-1	chr11	59208230	59209230	+	1000.0	f0_c57.idr	intron (NM_024210, intron 1 of 6)	intron (NM_024210, intron 1 of 6)	369.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	8.03536594338685	8.07804785228238	8.15476508217464	7.95167206525644	8.04706730022757	8.26736792629112	0.00437845376763603	0.984006445279195	0.996464361754829
Merged-chr11-78512189-4	chr11	78511703	78512703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	-35.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	7.78126157686606	8.08250513371038	7.61729672524684	7.89478555659304	7.97604893379065	7.38579712936775	-0.0869370556759016	0.750242002442931	0.937550343416037
Merged-chr6-129209979-2	chr6	129209479	129210479	+	780.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	28066.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	5.07540187230044	5.10192560879043	5.28577195734288	5.90852385652719	5.7050514113977	5.38273015803132	1.04960785754816	0.0030292593716863	0.0424341100672178
Merged-chr5-19952561-4	chr5	19952053	19953053	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	45035.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	5.56117651452988	5.53985540209354	5.86079892794078	5.79631249166754	5.79330317225077	5.55698178584793	0.14163318305677	0.66420795378952	0.907570536963321
Merged-chr4-129058986-6	chr4	129058479	129059479	+	872.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	708.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.43787180824817	7.22529191112351	7.19349659546839	7.39003992684241	7.52251095577492	7.01201452466433	0.0646308609116085	0.804805879151387	0.953651704501661
Merged-chr10-75499506-4	chr10	75499010	75500010	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17871.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	4.10697371007684	4.36969478154117	4.52908924852903	4.15552080584239	4.02429302877189	4.35481230865316	-0.445815120134156	0.356533285299793	0.743333039419324
Merged-chr12-70472864-4	chr12	70472353	70473353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	L1M2|LINE|L1	19699.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.68365045553413	5.59644074493471	5.70539108636171	5.62112792017905	5.91895019070186	5.4521205471714	0.0640980553090855	0.84777503429041	0.964318271116593
Merged-chr7-112238013-3	chr7	112237499	112238499	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	12163.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	2.4833984332524	2.64096022086355	2.62374572786741	2.22560586988624	2.092281860711	2.51226976748674	-2.11220019933308	0.0324034121083185	1
Merged-chr11-6508673-4	chr11	6508183	6509183	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178440, intron 18 of 21)	MTD|LTR|ERVL-MaLR	12275.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	3.53654639732066	3.83478451711698	3.94766553216092	3.85254643437858	4.08848019597807	4.15249713115266	0.793357196916267	0.14051632722317	0.500817380090189
Merged-chr1-43589198-4	chr1	43588694	43589694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141408.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	3.89461738880453	3.63797262209059	3.78227746152052	3.74349531156621	3.70753547907831	3.69564884965641	-0.196757012555431	0.713802283974254	0.925599802465018
Merged-chr8-85024563-4	chr8	85024068	85025068	+	905.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019652, intron 1 of 6)	intron (NM_019652, intron 1 of 6)	719.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	6.25148818143948	6.45923165250258	6.05411797028888	6.34705967411128	6.33031461003332	5.74772378116866	-0.149176832372622	0.650411799777012	0.902613484298836
Merged-chr3-127293062-4	chr3	127292569	127293569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	115989.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.91330423085577	3.96185557694283	4.1670796356491	4.76210950036443	4.67978066747693	4.70545977657548	1.89057748072639	3.51716224003721e-05	0.0011781643948028
Merged-chr11-104432019-4	chr11	104431533	104432533	+	781.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	10258.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.80160516410605	4.61970745921051	4.75396793206295	4.50789982710052	4.82626315958708	4.85621131653322	0.0319860240027637	0.93823351911164	0.986299125216244
Merged-chr1-170806369-4	chr1	170805876	170806876	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 9 of 15)	intron (NM_001081304, intron 9 of 15)	61395.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	4.74748437464942	4.59907263610978	4.9225231905491	4.52788120103096	4.41715613034966	4.73914717979839	-0.471809263678943	0.266120552013044	0.663894604423308
Merged-chr2-128701922-4	chr2	128701457	128702457	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	3042.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.26836668210393	6.34310893994052	5.99050696575008	6.15857216196701	6.16528697855491	6.02780634796773	-0.16376089336459	0.575134315454668	0.87094931637326
Merged-chr11-106777751-2	chr11	106777251	106778251	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_148431, intron 1 of 7)	B1F|SINE|Alu	1715.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	3.49350683146369	3.51070548240358	3.4818796995992	3.57399989367912	3.52139693174216	3.7605265706013	0.427467210708415	0.44942805015254	0.807765354206928
Merged-chr2-124613635-4	chr2	124613159	124614159	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	3363.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.37537634817938	7.39500697972236	7.27333749827111	7.46940089791453	7.51508537358495	7.30733112287566	0.128276269893767	0.576409960397893	0.871585692229598
Merged-chr17-23193695-4	chr17	23193203	23194203	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	-451.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	4.04785224533623	4.34196313367347	4.16621374566292	4.10796627255863	3.88134349129825	3.94221006332474	-0.622164375956691	0.209521725087722	0.601085495142021
Merged-chr2-102832853-1	chr2	102832353	102833353	+	556.0	f1_c57bl6.idr	intron (NM_001177787, intron 5 of 10)	intron (NM_001177787, intron 5 of 10)	68812.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.05044464650266	3.29088285006847	3.29618303219824	3.13975688101476	3.2829771588778	3.42060064736274	0.274926799132056	0.666614345227616	0.9082780021178
Merged-chr13-17695537-2	chr13	17695043	17696043	+	1000.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	130.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	8.46041624626652	8.67332831272456	8.35359994664426	8.62647800309514	8.68864737063174	8.71076237653602	0.232583465408717	0.268843407967708	0.666007887447011
Merged-chr1-170849834-5	chr1	170849173	170850173	+	763.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 3 of 15)	intron (NM_001081304, intron 3 of 15)	18098.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	4.96808317010681	4.98767882506205	5.14926279141274	4.80229040787765	5.02395914877833	5.33257988759067	0.0637309037590422	0.870299591721612	0.970065609722504
Merged-chr8-84975606-4	chr8	84975104	84976104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011563)	TTS (NM_011563)	3144.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	7.99741975364798	7.99889883589929	7.91354336873559	8.01226240889999	8.37993527733212	7.80307581725013	0.177922779782959	0.470054669430671	0.819264793771069
Merged-chr4-53129167-2	chr4	53128667	53129667	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 3 of 49)	B3|SINE|B2	30728.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.39394904155234	3.247696462147	3.71683280983586	3.34011218452297	3.36412165582382	3.68994525137929	0.0311004765109034	0.960235542129425	0.990357400804791
Merged-chr17-17867235-4	chr17	17866721	17867721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	7.84800899899096	7.72129653672265	7.58635024661111	7.77720907368299	7.97364112995391	7.61372903297688	0.110472937664416	0.63904516086564	0.897861309727799
Merged-chr6-57691682-4	chr6	57691148	57692148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025574, intron 1 of 1)	intron (NM_025574, intron 1 of 1)	430.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	6.41763934636728	6.39105539867563	6.32394233525843	6.44422478757786	6.19869440466784	5.70826501121047	-0.356449706444047	0.268252174467038	0.66531966666826
Merged-chr15-83464697-4	chr15	83464182	83465182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-76.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	5.91508065179957	5.59468543557614	6.01860054836113	5.87293675221053	5.65550538617286	5.66705447397339	-0.200292585712673	0.539418274624915	0.855893677201889
Merged-chr11-94987645-2	chr11	94987145	94988145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3567.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	4.93575960238819	4.9214652472766	5.65942507958641	5.2402020741413	5.10711490694149	5.29730048771124	0.0136324617573309	0.973892800582417	0.994171649042264
Merged-chr13-62859413-4	chr13	62858929	62859929	+	809.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-1059.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	4.00998917696972	3.88676346331717	4.30915220381302	4.3224306681087	4.36094131345163	4.45855598759739	0.858165475182313	0.0733040888997046	0.355717421657819
Merged-chr10-60379760-4	chr10	60379294	60380294	+	869.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 33 of 68)	intron (NM_001252635, intron 33 of 68)	-19932.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.41742116299837	3.30040361611141	3.36122886871199	3.04784355556327	2.74662087628154	3.26779113288894	-1.45535339194522	0.0446510037731484	0.266348828157108
Merged-chr15-7128702-2	chr15	7128202	7129202	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-870.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	2.8962662075225	3.09215125896824	3.25791547297994	3.27015312681791	3.1808113071916	3.48718184626803	0.963928728986849	0.147822516008312	0.513099278826115
Merged-chr12-111575394-6	chr12	111574888	111575888	+	891.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	878.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	5.85625991816731	5.78460176985387	5.81350213215046	6.14373865701973	6.15977319911129	5.87555517050809	0.449300336463424	0.133239324476014	0.488352467227564
Merged-chr6-84584502-2	chr6	84584002	84585002	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177713, intron 2 of 6)	CpG-12217	9308.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	2.48532690832353	2.66054925031284	2.67134764689961	2.71177816864324	2.83180204645276	2.86670105956525	1.07611254885025	0.155254804093924	0.524873107662021
Merged-chr7-25077093-4	chr7	25076606	25077606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168506, exon 2 of 3)	5' UTR (NM_001168506, exon 2 of 3)	299.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	7.22483734310264	7.50866645417293	7.5150586445834	7.3226216587032	7.25402139441773	7.54330578820129	-0.0708172110693637	0.772728378510427	0.943848608021176
Merged-chr3-20012225-2	chr3	20011725	20012725	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 11 of 16)	intron (NM_080634, intron 11 of 16)	23085.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	2.85766834039006	2.95466870734801	3.12273628994577	2.72794117409034	2.96021927512283	2.78052344322524	-0.709706177814311	0.329814779641233	0.721504110160967
Merged-chr6-123259288-2	chr6	123258788	123259788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2819.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	3.85736301424136	3.9203334622165	3.66140057276334	3.49013547955714	3.61039308671971	3.78428281208129	-0.65276268453538	0.238474083181909	0.635218372283766
Merged-chr5-43877100-2	chr5	43876584	43877584	+	791.0	f0_balb.idr|f0_c57.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8275.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.06160612885495	6.86606604197037	7.22653568766921	7.23040733928983	7.09085648810358	7.09066002768832	0.131761196756571	0.597895751542174	0.880491661353492
Merged-chr1-64614633-1	chr1	64614133	64615133	+	544.0	f1_c57bl6.idr	intron (NM_025964, intron 2 of 2)	intron (NM_025964, intron 2 of 2)	2535.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.79812734847576	4.97418773028656	4.75234521529188	5.02417712524633	5.29996374269668	5.08251076966728	0.636474090740726	0.0967655695246904	0.414649784169865
Merged-chr12-79750398-4	chr12	79749869	79750869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	174364.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	7.32878619197251	7.19509543990967	7.19316638052744	7.03892724899405	7.37343172424519	7.23878006322589	-0.0205188023709244	0.933095940789081	0.985356091252617
Merged-chr1-93446182-4	chr1	93445642	93446642	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301364)	promoter-TSS (NM_001301364)	-441.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	7.37257982250917	7.17136808501412	7.26791148153505	7.11990823570815	7.13674188298851	7.01274610014653	-0.267689390281304	0.258708604827981	0.656251800083823
Merged-chr16-92019522-4	chr16	92019012	92020012	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-38810.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	6.01425335918059	6.3099761059381	6.56045266548402	6.06798796049858	6.47896295625828	6.26097588476408	-0.0308391030974324	0.922061812234362	0.982542868764899
Merged-chr4-117136195-4	chr4	117135691	117136691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2228.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	7.0949146891827	6.86268698704858	6.94384278563417	6.70150748991357	6.68815665562616	6.61873510421442	-0.465084844072368	0.0648260401234204	0.331889684883762
Merged-chr4-149784639-2	chr4	149784139	149785139	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10372.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.17417729903051	3.17888319573746	3.22999876815397	3.2170752174112	3.25261092849727	3.35652282857611	0.33660487630938	0.585707751365887	0.875126871488964
Merged-chr10-81292834-4	chr10	81292333	81293333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008844)	promoter-TSS (NM_008844)	-130.0	NM_008844	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	6.7059247245762	6.33241687587966	6.3282125408025	6.48616712887636	6.22339082550877	6.55307226906263	-0.0868109220823612	0.767918880407658	0.942753355872352
Merged-chr11-49204133-4	chr11	49203636	49204636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	636.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	8.39401879976378	8.65252198368774	8.2812500937438	8.51482970316073	8.59823949799427	8.36152880470355	0.0579616256719849	0.794869715704136	0.950936267890352
Merged-chr9-20980540-2	chr9	20980040	20981040	+	735.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-3747.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	4.51633381875539	4.40626099352926	4.34866518640823	4.1107478738599	4.29595826792213	4.41596158334343	-0.401102630836131	0.375907059248022	0.758951282467405
Merged-chr3-142393838-1	chr3	142393338	142394338	+	549.0	f0_balb.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1858.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	4.6149931787025	4.45187639826919	4.56402311857589	4.39676480507264	4.39151274371962	4.50755688460519	-0.291643099473789	0.494713879281419	0.832098209532918
Merged-chr6-54021462-5	chr6	54021006	54022006	+	847.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18426.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.15119758735128	3.86851425215442	3.89720251803028	4.57794465047313	4.83660365642561	4.42287495222507	1.73708272461338	0.000392758567482369	0.00866171611001139
Merged-chr1-37555772-4	chr1	37555292	37556292	+	871.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14776.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	4.23900126021471	4.22902254900187	4.59893010857456	4.66498272719862	4.52189232421037	4.62585865990988	0.627453087140502	0.156785957851242	0.527637855647568
Merged-chr4-59529486-3	chr4	59528991	59529991	+	651.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	19873.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	4.08386766330962	3.89704532217957	4.18840538500528	4.15758375898712	3.72058820023794	3.52648861873498	-0.680522548437381	0.238691942239603	0.635449458992732
Merged-chr13-96586503-3	chr13	96586004	96587004	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	ORR1D1|LTR|ERVL-MaLR	43769.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	3.15956400280706	3.20751188736072	3.15021661985249	3.05630156548943	3.13623727594027	3.10438916020457	-0.318913947150228	0.61831388277128	0.889277642617907
Merged-chr4-133928174-1	chr4	133927674	133928674	+	600.0	f1_balb.idr	Intergenic	RLTR16|LTR|ERVK	39817.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	4.8012309319486	4.78422955002104	4.88412927811873	4.7083953508749	4.91077192777514	4.83891700557773	0.0123329224625656	0.974759961915292	0.994346221126257
Merged-chr10-120227787-3	chr10	120227272	120228272	+	880.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 1 of 2)	intron (NM_025431, intron 1 of 2)	712.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	6.01359164537585	6.57609832261001	6.22020768552996	6.41330418842337	6.34949269110203	6.10535758904977	0.00698183701515501	0.982233424951995	0.995992226862322
Merged-chr19-47507644-8	chr19	47507169	47508169	+	810.791626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-5313.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	3.5424441723384	3.35298048901867	3.54811589737335	3.43544770563724	3.10142662032477	3.22715282239051	-0.875202178086126	0.163680715001748	0.537749158771312
Merged-chr12-8348253-4	chr12	8347728	8348728	+	831.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34795.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.86953364256995	3.93579112745123	3.64578223842709	3.86623714153839	3.60199602732623	3.71757333393083	-0.32367158117144	0.552936956704896	0.861983853430146
Merged-chr4-59452688-4	chr4	59452185	59453185	+	983.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-14052.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.1789602431897	6.24507895919849	5.99768967841278	5.89325093725339	5.98531128806399	5.54319685542826	-0.545474634855981	0.0848699654953613	0.385758802798497
Merged-chr14-121331588-2	chr14	121331089	121332089	+	900.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	47641.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.31240134025554	3.33886596855418	3.28904740296089	3.28703190031391	3.40194161036414	3.67678368297129	0.551955069007879	0.365159677375078	0.750338480639737
Merged-chr13-67194522-4	chr13	67194021	67195021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048204)	promoter-TSS (NM_001048204)	15.0	NM_001048204	218311.0	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding	6.12510733813832	6.19833606826981	6.15933512970276	6.33497661677214	6.1900157846565	5.83758674076739	-0.0224166338299065	0.940676591536457	0.986881313555047
Merged-chr15-31565923-3	chr15	31565411	31566411	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	4.65000935661252	4.8473940992963	4.72981838278132	3.97091558961052	4.17388930143037	4.34862995989099	-1.49342294098564	0.00109485576658905	0.0193255745919265
Merged-chr5-140389312-4	chr5	140388795	140389795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	13.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	7.08103995331378	7.2956677554192	6.97159974276005	7.02801450933279	7.13885313788775	6.92977328527741	-0.134833961347114	0.591154570323041	0.877415484694165
Merged-chr12-79130799-4	chr12	79130278	79131278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009705)	promoter-TSS (NM_009705)	-10.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	7.26470104431711	6.81143196801365	6.84048213668015	6.10648403290945	6.28461814745746	6.16143178488015	-1.28086823391834	9.03647207174823e-06	0.000366247816924514
Merged-chr2-150896045-4	chr2	150895526	150896526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	MLT1A0-int|LTR|ERVL-MaLR	8705.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	7.75752524312017	7.69366702436337	7.50934240036465	7.53961148727168	7.73120369241054	7.42912364472707	-0.11972211298837	0.610399808465194	0.88555733136329
Merged-chr15-57881003-4	chr15	57880507	57881507	+	791.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 2 of 7)	intron (NM_024207, intron 2 of 7)	11411.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.81527074103767	4.27277131834034	4.36381675536457	4.23664595107355	4.24604419806258	4.16697472521137	0.141601562357454	0.778801136931262	0.94552476073562
Merged-chr11-3177400-2	chr11	3176878	3177878	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	16085.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.21128669373148	6.78687756559541	7.10206660282004	4.53325097147325	4.13955320196947	7.38053449770001	-0.698683683988678	0.727904655553912	0.930333326871725
Merged-chr13-94721956-2	chr13	94721456	94722456	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66987.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	4.26807986508696	4.37270112944213	4.12079127996116	4.76038438654245	4.90927549498928	4.24599379928987	1.03571571180861	0.0316767156247286	0.215780282742728
Merged-chr1-55613112-4	chr1	55612607	55613607	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	207161.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.45250902096536	3.83997283503652	3.49274869964773	3.45450627636134	3.29898714711914	3.45199897757721	-0.784425011909821	0.192967038794322	0.580072303612641
Merged-chr7-28382064-4	chr7	28381562	28382562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2834.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	9.15273028991166	9.03229696363933	8.58764498879399	8.92693445099685	9.06052523667424	8.64781345558281	-0.079338159844251	0.748907316416362	0.93711275444937
Merged-chr9-20545552-2	chr9	20545052	20546052	+	862.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24133.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	3.38000597764239	3.26822537171969	2.99344938366488	3.18761901855161	3.30570245828961	3.36848879006675	0.232925726524281	0.72326304931962	0.929000340406704
Merged-chr7-46616395-2	chr7	46615895	46616895	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 7 of 10)	intron (NM_013789, intron 7 of 10)	23412.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	5.68304514339103	5.54127007626638	5.12033663114671	5.30172610773465	5.34545370599377	5.14987850198803	-0.406501751706466	0.269533753902583	0.666672224027477
Merged-chr15-76080942-4	chr15	76080454	76081454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133691)	promoter-TSS (NM_133691)	-8.0	NM_028364	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	7.88894648745841	8.12723017981184	7.80174059727225	7.8396019369847	7.97256438730279	7.72642722880316	-0.137716625095787	0.550127450549662	0.86061104953497
Merged-chr8-37011867-4	chr8	37011376	37012376	+	937.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126063, intron 1 of 2)	intron (NR_126063, intron 1 of 2)	12362.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	4.77543289650094	4.51064432754805	4.55006613087166	4.51882381968546	4.46479764274	4.73511042768229	-0.125323384738792	0.769140209756168	0.943019577969849
Merged-chr5-123153042-4	chr5	123152541	123153541	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 7 of 16)	MER3|DNA|hAT-Charlie	10848.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	4.53477693503578	4.21136205619066	4.22798321625207	4.10886739775108	3.9934944530789	4.34040685475432	-0.526746350103915	0.276291808635374	0.673680780236515
Merged-chr5-88500668-1	chr5	88500168	88501168	+	642.0	f0_balb.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12693.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	2.93187555206133	2.9142222645256	2.81695123509501	2.91356270418845	3.02343840548562	3.12989449852479	0.618437382211787	0.369046088967201	0.753819397358181
Merged-chr14-70860786-4	chr14	70860297	70861297	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7864.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	5.67514171521945	5.25208905587995	5.61106093215918	5.31378328952079	5.12932765247686	5.56723725685606	-0.360229229402174	0.3263771659209	0.718672362177046
Merged-chr2-52419503-1	chr2	52419003	52420003	+	556.0	f0_balb.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	5371.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.28098443996414	3.13243847039291	3.19141021940596	3.49521194969331	3.12981334909343	3.83313748710043	1.1786903028562	0.0780343356088786	0.368845675182172
Merged-chr16-33062414-4	chr16	33061900	33062900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172823)	promoter-TSS (NM_172823)	-121.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	5.72057339210862	5.36847337480442	5.81789916162009	5.41746773203644	5.51960574598952	5.73415023436258	-0.15829408139583	0.646883227060943	0.90114476203283
Merged-chr19-14587410-3	chr19	14586896	14587896	+	940.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	9817.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	5.77077305479191	5.61661587895613	5.68578776140329	5.92545185570336	6.01958608469079	6.01783132339895	0.527123278647482	0.0797643732124823	0.373559631128734
Merged-chr2-119029469-4	chr2	119029027	119030027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199310)	promoter-TSS (NM_199310)	-134.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	5.52822376253324	5.63792249090878	5.58653687166843	5.77502869359007	5.83236663775772	5.47171636396402	0.238663301529631	0.463429000983608	0.8158640892401
Merged-chr3-96499760-4	chr3	96499298	96500298	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25387.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	5.82158813413857	5.48453293978119	5.80005659846121	6.73834619373813	7.11782631646556	6.69871537449178	1.93988366050872	1.87391901319808e-10	2.34473764285994e-08
Merged-chr14-55643276-6	chr14	55642814	55643814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360063)	promoter-TSS (NM_001360063)	57.0	NM_001360063	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	8.15709680274618	8.42370335156291	8.20321919139329	8.27922415071187	8.14387995546291	8.03656434609675	-0.154274288153395	0.483143175522754	0.826011835108275
Merged-chr13-93300783-4	chr13	93300306	93301306	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	5.876680599589	5.81394243419146	5.8993612638331	5.85659901155214	6.16935836391807	6.15984787978719	0.365148515744835	0.225726715438119	0.620677573839554
Merged-chr15-101976764-4	chr15	101976263	101977263	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22476.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	8.26278901240045	8.887511607416	8.88323291910465	8.50075350981851	8.84511819482215	8.70965526573028	-0.0218133196560394	0.933123540562542	0.985356091252617
Merged-chr11-12535741-4	chr11	12535246	12536246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70786.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	3.16494889974839	3.30994387986208	3.39779631416636	3.42599311796518	3.36764077771698	3.18069521649695	0.170197400746721	0.784352869424144	0.947576747080331
Merged-chr12-102745036-4	chr12	102744508	102745508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001324515, exon 2 of 2)	exon (NM_001324515, exon 2 of 2)	1248.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	6.59129443662959	6.87406097551052	6.2213485602507	6.72243245102681	6.80644571585399	6.28256894046613	0.0509741691071209	0.873295276973868	0.97040331531529
Merged-chr13-42367802-4	chr13	42367297	42368297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66321.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.49884333125754	5.62752792882087	5.57001327644967	5.60273932385338	5.69710342971433	5.97666134275593	0.354906947695769	0.275096217496144	0.672466816815303
Merged-chr5-145179818-2	chr5	145179429	145180429	+	728.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 7 of 7)	intron (NM_001291249, intron 7 of 7)	11663.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	4.74995944577913	4.73041195220344	4.6767967067966	4.64567161351289	4.60978410050587	4.57904687438009	-0.258379983658785	0.521174821896513	0.84693755135567
Merged-chr10-128696432-4	chr10	128695930	128696930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177411)	promoter-TSS (NM_177411)	-162.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	7.56826707143014	7.63523214844567	7.64810600961431	7.44552121197563	7.74437114957726	7.73990898340587	0.0500816416307497	0.82753865875778	0.959467071709035
Merged-chr1-80636445-3	chr1	80635943	80636943	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28909.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.6417788589373	6.34279678667854	6.51298030684458	6.4367018511047	6.54727931810353	6.42738837296358	-0.0465043543331004	0.864236853700403	0.968269312109804
Merged-chr3-109478462-4	chr3	109477955	109478955	+	937.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95552.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.63827922405143	5.60466468790688	5.55983437148174	5.43343639552902	5.47710211318016	5.80289886159176	-0.0625059094281384	0.850032846299858	0.964787454473661
Merged-chr2-128870916-4	chr2	128870426	128871426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	6994.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	6.33204305255562	5.63408213101429	5.25589685661029	4.86892499276682	5.06636024682144	4.98441820743575	-1.65146008112185	0.000123154633724277	0.00338199695146192
Merged-chr5-31254619-2	chr5	31254119	31255119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 43 of 47)	intron (NM_026298, intron 43 of 47)	2913.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	3.17303580636732	3.11447866154784	3.31899079726408	2.96139530375029	2.83228092750715	3.0549583208069	-1.17919730674151	0.0830526281735473	0.381318936437926
Merged-chr7-100950683-4	chr7	100950189	100951189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	L2|LINE|L2	13677.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.61840992308771	6.40146757034197	6.4907850571038	6.42043629534651	6.52259122964793	6.38328300866485	-0.0949014541331373	0.723291529919471	0.929003621652892
Merged-chr9-90236154-2	chr9	90235654	90236654	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	Tigger13a|DNA|TcMar-Tigger	34615.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.89926897038874	7.84365808223142	7.74838489413921	7.60238400227271	7.73884395878068	7.68071765185365	-0.228084568002517	0.293750286364382	0.690424156263798
Merged-chr2-160086188-3	chr2	160085652	160086652	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69499.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.02619895473818	7.13548061143226	7.17166608244665	6.42652820689339	6.38162686908668	6.75372553628582	-0.922489914022746	0.000443055284567584	0.00956309834456538
Merged-chr14-78701279-3	chr14	78700749	78701749	+	995.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	31480.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	2.90206494064061	3.36777469920745	3.1405600882248	2.62898407683136	2.74166026582026	2.72087504709811	-2.359334117805	0.00334668710675195	0.0456510066850191
Merged-chr9-70838695-4	chr9	70838174	70839174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96134.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	7.55555263134054	7.23533101550857	7.36602462611903	7.65680911959304	7.6828856362321	7.28524968155004	0.246828876291117	0.328059073042773	0.720241143792693
Merged-chr19-9931653-2	chr19	9931148	9932148	+	1000.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-32115.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.73028901232693	7.65443975411624	7.40478488286352	7.16641711507889	7.35575536688777	7.0311787083573	-0.602790603038546	0.0150731629875441	0.133213780761293
Merged-chr2-71331187-2	chr2	71330687	71331687	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	36367.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	2.9689702457416	2.7375499557804	2.97716725376687	3.01509375161598	2.97760990248424	2.8665756844697	0.290011387112553	0.679604209963627	0.913944807955868
Merged-chr4-34386558-4	chr4	34386051	34387051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164064.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.32867183360667	6.3812279456173	5.94707153970506	6.16394673174772	6.04112177373494	6.17019641879696	-0.207971235499468	0.485585320130038	0.827504186777075
Merged-chr17-21962683-4	chr17	21962190	21963190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199048)	promoter-TSS (NM_001199048)	131.0	NM_001025373	74670.0	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	6.76897534117108	7.15278618607458	6.86419801071437	7.32422587169532	7.3108621764492	7.15509225256933	0.489285651692021	0.0558822421248109	0.304369287341838
Merged-chr2-91972363-4	chr2	91971861	91972861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	-8798.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	8.07788788385425	7.88214994126129	7.71835510435316	7.82567053136152	8.07839959395757	7.49798850456223	-0.104152370117677	0.688284838079617	0.917193226920892
Merged-chr19-42147946-4	chr19	42147490	42148490	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183195, exon 1 of 2)	exon (NM_183195, exon 1 of 2)	601.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	6.33899986642789	6.5022811503078	6.31708661940843	5.37566831687863	4.80423544765752	5.51965150150566	-2.08279091876553	7.31082424265594e-09	6.85816306181415e-07
Merged-chr11-118216099-6	chr11	118215618	118216618	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	MTD|LTR|ERVL-MaLR	-3376.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.87108361686931	6.60279984448646	6.87607898756439	6.67931547172679	6.57297405872781	6.44728718915184	-0.333364027654415	0.21154271797532	0.603945120913907
Merged-chr4-101653624-4	chr4	101653136	101654136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	MTD|LTR|ERVL-MaLR	5853.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	7.04457919547227	7.19254830725447	7.29911323022631	7.11324314804309	7.3486647799266	7.24321577135342	0.0950688882970674	0.695075247185299	0.919230570201314
Merged-chr6-31208420-4	chr6	31207918	31208918	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	10056.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.29940997070468	6.49561069625033	6.10232613478163	6.10296276012267	6.20829598048825	5.72754352824692	-0.460474361605415	0.145523030495869	0.50870395838761
Merged-chr7-4355568-1	chr7	4355068	4356068	+	554.0	f1_balb.idr	Intergenic	Intergenic	17844.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	3.59446832247686	3.45249997461939	3.60089115427014	3.1835849659105	2.97569285701218	3.40911120280064	-1.46109062874132	0.025315562319671	0.188463568891042
Merged-chr15-28025148-4	chr15	28024588	28025588	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	CpG	760.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.42987497245998	5.35746352264971	5.27885644898987	5.0719140763156	4.97199945978934	4.88279655811679	-0.782344009384299	0.0292020012625938	0.205292338717295
Merged-chr8-41375689-4	chr8	41375146	41376146	+	775.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-949.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	6.51623734097785	6.68664932602932	6.57329072914926	7.15933411836619	7.44766641296409	7.03381539382933	0.98135379474671	0.000186842728132595	0.00473408253400056
Merged-chr8-25598346-2	chr8	25597846	25598846	+	920.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-859.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	6.1262132751296	6.14276570051083	6.09188157504612	6.49007859145359	6.94495763459908	6.55123797935812	0.923653939116364	0.00142155939121713	0.0237520308884326
Merged-chr9-83574449-3	chr9	83573948	83574948	+	778.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	26110.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.29039926079064	4.4663340545786	3.87178044777099	4.19175134121946	4.04764194105646	4.10311739174666	-0.360102348749978	0.480993802690362	0.824891904452147
Merged-chr4-126467907-4	chr4	126467401	126468401	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153403, intron 1 of 18)	intron (NM_153403, intron 1 of 18)	682.0	NM_001317174	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	4.92464501124656	4.51383705140048	4.80206112104712	4.92399089423875	4.80577112980546	4.86764578530714	0.245455653199735	0.547037596667897	0.859168905101902
Merged-chr8-83999079-2	chr8	83998602	83999602	+	646.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081415, exon 2 of 5)	exon (NM_001081415, exon 2 of 5)	1430.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	3.96226080640903	3.98946268800633	4.04658391560708	3.82378085664491	3.77611105253723	3.87357532332874	-0.54901062640897	0.275831911122441	0.673242318833586
Merged-chr14-33213960-4	chr14	33213451	33214451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2872.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	2.71265278187696	2.63629109061912	2.8504058640376	2.56153708572345	2.49973929445538	2.55544786064043	-1.12029625838139	0.147967941031428	1
Merged-chr2-164940574-4	chr2	164940088	164941088	+	884.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7631.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	4.30618764568658	3.89298115939524	3.91591561527799	4.7462238606102	4.11120893920035	3.93377362897833	0.702006447841026	0.214704843496063	0.607872121632624
Merged-chr16-31290464-4	chr16	31289958	31290958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-15181.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	7.24941960464921	7.8881182808263	7.38546136232255	7.34975426218449	7.63906499352174	7.2332018097527	-0.174310355515068	0.542510743153096	0.857253103351491
Merged-chr11-31917880-2	chr11	31917380	31918380	+	872.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290676, intron 3 of 8)	MER44D|DNA|TcMar-Tigger	46940.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.19711558192386	3.11321423981262	3.10152364049661	2.91759457615817	3.06921062780534	3.05523168493722	-0.54931722464006	0.406522613353121	0.780766633087583
Merged-chr16-33902102-4	chr16	33901599	33902599	+	958.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	64939.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.65497445807173	5.79062621519795	5.6462441827576	5.87893578802363	5.59335518684487	5.65359181594236	0.0193225391976278	0.951695417855666	0.988927145527245
Merged-chr9-20878297-4	chr9	20877797	20878797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145154, exon 2 of 6)	exon (NM_145154, exon 2 of 6)	1413.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	6.8351984558317	7.1000306836106	6.89634431114736	6.92042341438015	7.03063911461473	6.6725815834601	-0.0904612177242212	0.730847825386399	0.931175666746392
Merged-chr9-41072874-4	chr9	41072348	41073348	+	954.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	6658.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.73534640492828	4.64356586393685	5.32701571828875	5.55949851296564	5.79844147890791	5.78569207371452	1.60083532998932	5.10421865492074e-05	0.00160922580113595
Merged-chr2-75823983-4	chr2	75823476	75824476	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8201.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.61692246497618	4.59483942564756	4.54460770048594	4.81105846132016	4.80765240179846	4.52489259998408	0.33679831082374	0.41513524939985	0.786137484375978
Merged-chr15-84235869-4	chr15	84235369	84236369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3826.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	7.13526623969627	6.98647061807206	7.00553564291426	7.13856965922973	6.99352571789381	7.07665765726073	0.0347276839335387	0.88491977680801	0.973538624783452
Merged-chr2-129303398-2	chr2	129302898	129303898	+	952.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 5 of 6)	(TC)n|Simple_repeat|Simple_repeat	6028.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	3.84934589767621	4.04583671221881	4.08590607778444	4.32449967322425	3.9495077143998	4.33138107304167	0.605267591281047	0.229614397031622	0.625238163419178
Merged-chr16-10785631-4	chr16	10785124	10786124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-88.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	7.63755125673883	7.9649669716884	7.64660901490958	7.68087605742712	8.1389445984787	7.86018500915222	0.214023204257212	0.395607422750299	0.772934444820245
Merged-chr3-87905425-2	chr3	87904925	87905925	+	914.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008231)	promoter-TSS (NM_008231)	-896.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	5.0669334892291	5.10801664711074	5.05334779642618	4.85571254551748	4.8476981021254	5.01422458178335	-0.382488634126093	0.302287485172867	0.698958713820873
Merged-chr15-78860707-4	chr15	78860221	78861221	+	866.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5192.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	5.5009481921131	5.45156025538427	5.73579793540589	4.92388744431802	5.36879787805473	5.33831919585975	-0.649062691857047	0.0768120823887788	0.365129691660795
Merged-chr6-124966874-2	chr6	124966364	124967364	+	906.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1326.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	4.79041403128358	5.10025965956583	4.82180536447823	4.78024031143838	4.76153138952391	5.16219054181114	-0.0324114246749103	0.936694750080515	0.986037792257163
Merged-chr7-101906279-2	chr7	101905779	101906779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	80.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	8.74332879335338	8.88250936475055	8.57339602587356	8.85522291880562	9.11087018962962	8.5194590335863	0.158811497720453	0.513158640532292	0.842386840305613
Merged-chr3-75557466-4	chr3	75556960	75557960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-33.0	NM_009250	20713.0	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	4.87889973720602	4.99894799526155	5.08015844098632	5.11614131294357	5.26045333565268	4.89041838506878	0.268662322985648	0.478649588885037	0.823838216369461
Merged-chr17-28258777-2	chr17	28258277	28259277	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-12931.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	4.80574562064144	4.9762603056943	5.30186007174756	5.55340982731389	5.23471340085053	5.36509297892923	0.729637643534856	0.0549346725203928	0.301140011270627
Merged-chr17-63402394-4	chr17	63401879	63402879	+	835.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	L1MDa|LINE|L1	-89406.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	4.09093663011911	4.07431268192598	4.4428329174923	3.96998506512571	4.11720537683255	3.76512963198342	-0.680428401448628	0.1934356870107	0.580579181357944
Merged-chr6-125252432-4	chr6	125251923	125252923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13102.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	5.48880615259117	5.59312070508183	5.9929082006626	5.89336775043858	6.12008243377213	6.11689641428011	0.625908638964734	0.0552015397638186	0.302016972916127
Merged-chr2-180255865-4	chr2	180255357	180256357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-1522.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	5.00023245187135	5.42758623006099	5.39892673548637	4.95116787885051	4.80309302799229	4.87065232793353	-0.873133782495881	0.0238279828536393	0.181381282342477
Merged-chr10-125725599-4	chr10	125725103	125726103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240616.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.62929033501672	4.55651714195848	5.15024120323384	4.50495643642677	4.92685196315927	4.92678822563248	0.0159844266451921	0.971729144545663	0.993783614343214
Merged-chr1-135269344-4	chr1	135268838	135269838	+	705.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 4 of 9)	PB1D10|SINE|Alu	-10866.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	4.33054027611547	4.22839255343104	4.26814611942379	4.47968192466743	4.66153699245335	4.63191605810238	0.819615802587455	0.0594991139341754	0.315800361818898
Merged-chr1-149863367-2	chr1	149862867	149863867	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 12 of 17)	intron (NM_008869, intron 12 of 17)	59072.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.39248433707374	3.22039642181893	3.67938071036844	3.26525343823416	3.54188671935011	3.38613450593593	-0.11288678918437	0.8573902145289	0.966747388099837
Merged-chr13-41015815-2	chr13	41015315	41016315	+	725.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	-435.0	NM_025387	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	5.65370711139578	5.40769213247033	5.52347342675924	5.67983794012204	5.59842769652463	5.55758961413928	0.153845611894396	0.635624844173923	0.896689400512689
Merged-chr11-77355313-4	chr11	77354848	77355848	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	MER5A|DNA|hAT-Charlie	7068.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.24698315271396	5.95731983045801	6.01620465480008	5.85082007249847	6.23259366994689	6.07714885458291	-0.0229908180938719	0.940562815495278	0.986852666940686
Merged-chr15-81586089-4	chr15	81585598	81586598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-116.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	8.51923452325817	8.68412319681531	8.75430175210676	8.61459005174446	8.5223592048787	8.80082377834637	-0.0093190081192154	0.964945549932733	0.991706426018327
Merged-chr13-14039600-4	chr13	14039099	14040099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130788)	promoter-TSS (NR_130788)	39.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	7.65654885710084	7.8742898966852	7.51264723452636	7.97313747110706	7.80810066781182	7.44079388149807	0.102163308301058	0.691554268216534	0.918378593768635
Merged-chr19-32200228-3	chr19	32199711	32200711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	10802.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.04024363389522	3.01048471597944	3.15770216344179	2.75010964713969	2.59497093333493	3.06225515835081	-1.29212805127888	0.0891008721882259	0.396571563147253
Merged-chr5-139479248-4	chr5	139478776	139479776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133349, intron 3 of 6)	intron (NM_133349, intron 3 of 6)	5215.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	5.16411890492302	4.92811014431366	4.7090191753977	4.77918028931168	4.29961417411809	4.42278972743407	-1.0199991543549	0.0221167813735623	0.172651575619793
Merged-chr1-167332398-2	chr1	167331898	167332898	+	856.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-17593.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	3.97475915132149	4.18520804914886	4.22553394122904	3.83451520987434	3.91655308505053	4.11577640765632	-0.516471702492353	0.301461691681096	0.698200786354329
Merged-chr11-21091831-4	chr11	21091330	21092330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	CpG	506.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.55018750824984	7.57062259152991	7.45311290557539	7.63562379891227	7.38034817517872	7.60855480694418	0.0193029206119214	0.933069554839356	0.985356091252617
Merged-chr4-43493413-4	chr4	43492912	43493912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001460)	promoter-TSS (NR_001460)	47.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	7.54117617813711	7.48024740486187	7.05806417997775	7.19229331540387	7.4093231858475	6.74591924253926	-0.337247174250806	0.252485661678513	0.649921954382832
Merged-chr10-12699134-3	chr10	12698631	12699631	+	744.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 22 of 73)	intron (NM_011682, intron 22 of 73)	162604.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.50199396633311	3.44633756697288	3.58997793419636	4.00013167507488	4.00015337248526	3.66262591217748	1.33978917690221	0.0161851026318953	0.139958063510567
Merged-chr9-13545901-4	chr9	13545393	13546393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74096.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.16960332419008	4.92426464682574	5.04470827758656	5.00884883172874	4.58670269480859	4.77799074703076	-0.554764658319753	0.167251836787922	0.542880306552643
Merged-chr18-73816608-4	chr18	73816106	73817106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1214.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	6.89733449334869	6.73354379965325	6.65449690530242	7.27148229400689	6.9917152772535	6.74717269944684	0.39579584457267	0.148299135396501	0.513810562044974
Merged-chr12-3894720-4	chr12	3894204	3895204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2960.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.65315954792689	7.84887924274325	7.25543995866593	7.09759804419197	7.34244330212066	6.63806388814333	-0.803194620245822	0.00847590047134919	0.0897394994808529
Merged-chr1-151616722-4	chr1	151616243	151617243	+	935.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	RMER19B|LTR|ERVK	45370.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.47053568175946	5.1528561563281	5.37531095119864	4.76167205142353	5.04240893755403	4.9835665185877	-0.830520463517785	0.0281126898266697	0.200497188231554
Merged-chr7-7298730-4	chr7	7298203	7299203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_049193)	promoter-TSS (NR_049193)	133.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	9.11325135921918	9.14175309546368	8.78232135396726	9.02585199547052	9.07069690300036	8.67242096842791	-0.118610547506948	0.606805756546023	0.884334764702363
Merged-chr2-124611415-4	chr2	124610916	124611916	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1120.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.90275530387763	8.09533401173371	7.94950232979652	8.11315951912882	8.3972502346801	7.89399103037901	0.245044582577097	0.306449307990145	0.702685020371582
Merged-chr4-62308585-4	chr4	62308092	62309092	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 21 of 27)	B4A|SINE|B4	17045.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	3.64872927319371	3.47481929662687	3.82294761055809	3.79299456365237	3.35032071592585	3.8915366347118	0.138899478787834	0.8169228491457	0.956754861188725
Merged-chr2-44274722-4	chr2	44274240	44275240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-209416.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	7.36685562930653	7.73072872330335	7.15168607178751	7.36829406276966	7.57745495302313	7.14391497132797	-0.0947741497100604	0.732305114133996	0.931723932448277
Merged-chr2-6330848-4	chr2	6330365	6331365	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	8108.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.00673056260211	4.85936940239261	4.61914746039843	4.59307502484593	4.84780330229316	4.68672537229441	-0.290147846547604	0.483414813790365	0.826174950723369
Merged-chr2-39064387-2	chr2	39063887	39064887	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290649, intron 2 of 21)	B1_Mus1|SINE|Alu	1154.0	NR_110968	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	3.16980153154527	2.9659771994134	3.40727908074611	3.22242463470038	3.28255754576527	3.08350303186262	0.0657403618626401	0.921614498453046	0.982542868764899
Merged-chr16-33918866-1	chr16	33918366	33919366	+	604.0	f0_balb.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	48172.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.71211406870813	3.51080883336222	3.76459540214999	3.72582553302641	3.48896236704093	4.10688259424168	0.413691043348098	0.48003043460838	0.824474204175932
Merged-chr6-29279181-4	chr6	29278693	29279693	+	952.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1948.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	3.78072869450157	3.92083252129966	3.99232764695677	3.8151501154509	3.82783936251116	4.05968268464796	0.00526920731590044	0.991835047012942	0.998351393644539
Merged-chr16-36936981-2	chr16	36936481	36937481	+	862.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1998.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	6.56963630318127	6.79837536813317	6.69971461204865	6.99886034780028	6.97733095968646	6.9239366795559	0.426860321565445	0.0879675966307735	0.393527300024376
Merged-chr8-70545214-2	chr8	70544714	70545714	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	5539.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	6.8650662822599	6.88740789802397	6.77577037690172	6.33055793246777	6.43997519296305	6.26451493160259	-0.783883689705331	0.00263519778540051	0.038133832578714
Merged-chr10-80340374-4	chr10	80339871	80340871	+	940.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104339, exon 12 of 12)	non-coding (NR_104339, exon 12 of 12)	8077.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	2.73709447633295	2.62903451441257	2.94629852614503	2.83465401239496	2.55309137965209	2.78236506491259	-0.244497324143501	0.747378011160982	0.936600911319824
Merged-chr4-8939172-4	chr4	8938683	8939683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187859.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.43944621903857	4.4718914990936	4.40855851835001	4.29530168556518	4.11408429051772	4.51654290262987	-0.355015186221573	0.435304479302318	0.798959195186662
Merged-chr7-28812082-2	chr7	28811571	28812571	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	1181.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	4.57017816434215	4.80123751583464	4.53509637067939	4.57296877744272	4.53466973132026	4.7991194531784	-0.0375876662634447	0.929080469710138	0.983987942057929
Merged-chr15-38661065-4	chr15	38660560	38661560	+	892.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-844.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	6.42254193309755	6.40633721007206	5.98069400122876	6.41047840115789	6.63539242175748	6.29393900629787	0.269893244513768	0.36970041425887	0.754305613253213
Merged-chr15-64222817-4	chr15	64222314	64223314	+	885.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89859.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.78217630640242	3.9745751166756	3.86811235901357	3.85992277948563	3.89518600707537	3.7827436151095	-0.0887751896749837	0.863275381493181	0.968226518655498
Merged-chr11-116807659-1	chr11	116807159	116808159	+	794.666687	f0_balb.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20387.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	4.31146591152286	4.29611255669976	4.61292012044464	3.49152561745505	3.17181059832397	3.47913393532858	-3.94242079090817	1.85891726980424e-08	1.58642859677816e-06
Merged-chr12-91008398-4	chr12	91007893	91008893	+	972.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 25 of 25)	intron (NM_181815, intron 25 of 25)	-37455.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	3.89175839050926	4.56173559927218	4.26582132585377	3.7002948410576	3.7830838228356	4.01385326519519	-1.28919459159107	0.0188291267708857	0.155306699083253
Merged-chr19-5727876-6	chr19	5727433	5728433	+	967.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181452)	TTS (NM_181452)	-1616.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	5.04991594504174	5.14374608584085	5.27961689558373	5.28303819997563	5.319279892203	5.59561504109503	0.489039918026461	0.168952252583596	0.545567332853766
Merged-chr1-54492636-3	chr1	54492174	54493174	+	816.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 22 of 26)	intron (NM_001163314, intron 22 of 26)	-53648.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	2.81003411091872	3.02618615816281	3.14441657637178	2.89065038456478	2.88561385381837	2.80190187693994	-0.647095859001864	0.362828216015276	0.748356804278397
Merged-chr12-86242825-4	chr12	86242319	86243319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	961.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	7.41022954762677	7.83563329742103	7.50456582945805	7.88700518356076	8.09924443312253	7.38622628659135	0.33607640582892	0.235841712655355	0.632196962128085
Merged-chr3-83881355-3	chr3	83880892	83881892	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39784.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	2.53567116195395	2.46391285823591	2.63020294250181	2.69977126401952	2.39130064333444	2.76479661831076	0.464644054888081	0.561312383837539	1
Merged-chr2-119208601-1	chr2	119208101	119209101	+	1000.0	f0_c57.idr	promoter-TSS (NM_001164827)	promoter-TSS (NM_001164827)	-119.0	NM_001164827	72008.0	Mm.386807	NM_028054	ENSMUSG00000068580	Zfyve19	1500041L05Rik|ANCHR	zinc finger, FYVE domain containing 19	protein-coding	7.41092642218199	7.80905343306532	7.63787198665445	7.61202683295327	7.91273006938392	7.54056846448184	0.109886281149147	0.663130133318766	0.907039675168715
Merged-chr9-62968545-4	chr9	62968049	62969049	+	595.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	Charlie1a|DNA|hAT-Charlie	12330.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.40139621373354	5.22283828374644	5.13746679374392	5.52604509317962	5.77118888083971	5.2733850556455	0.559980255408316	0.1209377140574	0.465082280874803
Merged-chr16-35778135-2	chr16	35777635	35778635	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	B4A|SINE|B4	7749.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	3.17304526421865	2.74369521603666	2.97244229870366	2.73625518318633	2.87486377066859	2.59492682314822	-1.14636936069601	0.15065938248356	0.517564234271863
Merged-chr12-100204090-3	chr12	100203569	100204569	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	3925.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	5.72470983727704	5.76626689715413	5.14369891781185	5.45526011717222	5.33368608551146	5.38185050588365	-0.380823238900577	0.298689401379978	0.695427199902635
Merged-chr1-60609602-3	chr1	60609105	60610105	+	865.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42840.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	4.31302430652722	4.6209366221988	4.39891006208436	4.07680083377382	4.12666516404476	4.24473171734956	-0.827831387865957	0.0742232470305096	0.358343631974183
Merged-chr6-34029450-4	chr6	34028992	34029992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028886)	promoter-TSS (NM_028886)	44.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.45667923716044	5.55031641534824	5.49030647589197	5.19008481522085	5.68226647290752	5.01579930758195	-0.291065969461316	0.448933775794676	0.807468537975475
Merged-chr9-58210174-4	chr9	58209687	58210687	+	870.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5868.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	3.0618368116115	3.09461288926969	3.22121732669745	2.92203661785523	3.02839964685705	3.18143845785438	-0.356019003389136	0.590754317540031	0.877301111216348
Merged-chr3-53098337-3	chr3	53097832	53098832	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	56785.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	3.09571792378484	2.98234373625316	3.27686324968604	2.66868634722139	2.66699451558038	2.70522532987583	-2.36785009426949	0.00251637586435908	0.036929235859837
Merged-chr12-116441815-1	chr12	116441315	116442315	+	549.0	f1_c57bl6.idr	intron (NM_133762, intron 23 of 28)	ORR1D1|LTR|ERVL-MaLR	36413.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	3.87069522745518	4.29881290321485	4.17457747190195	4.80465077626745	5.40302187735053	4.7097653456462	2.18302344252407	1.2636627171659e-05	0.000488827742305626
Merged-chr4-43972356-4	chr4	43971862	43972862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-11142.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	4.73147469425549	4.52696782462347	4.50152738621833	4.83209679287637	4.66916245529509	5.08826891560104	0.620836400190075	0.14124028251307	0.502042865024032
Merged-chr2-131492816-3	chr2	131492332	131493332	+	685.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	970.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	5.55334347931197	5.82677605177414	5.79175529997505	6.16339523031696	5.84413962385665	5.54712731462412	0.279354642457549	0.412980036558867	0.784726474670108
Merged-chr16-94240349-4	chr16	94239841	94240841	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	L1MB4|LINE|L1	49950.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	6.49596127993023	6.31188456229131	5.99921603447062	6.29978664351137	6.37467708651423	6.2423786655595	0.0216446239310075	0.941546229317207	0.987024728112131
Merged-chr6-134047601-4	chr6	134047104	134048104	+	757.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	11904.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.06261841085073	4.57710789932743	4.92355077586453	5.28121660757374	5.34767519875263	4.87387533101917	0.688409315636751	0.0958141258514295	0.412676731913958
Merged-chr17-5615127-4	chr17	5614620	5615620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122520.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.58238255101347	4.42130090630294	4.3083134028599	4.17656371853908	4.00430445781173	4.23917706250201	-0.846254508385416	0.0684981361283938	0.342338453418908
Merged-chr12-85289059-2	chr12	85288559	85289559	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172414, intron 1 of 2)	intron (NM_172414, intron 1 of 2)	468.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	4.40154202865665	3.85375481707516	3.86941117863364	3.58150480277257	3.47620653724564	3.98920475717297	-1.18935702132642	0.0450013076121928	0.267576733156734
Merged-chr16-91869127-3	chr16	91868618	91869618	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62512.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.89809525072367	7.92179297412805	7.68825473243843	7.9208794469135	7.95560350335355	7.96893325925399	0.145988829149534	0.500237861277414	0.834978949366358
Merged-chr3-97208807-2	chr3	97208307	97209307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029933, exon 8 of 10)	exon (NM_029933, exon 8 of 10)	18557.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	1.95675484156817	1.96319532552579	2.2298894811824	1.83199694490587	1.75043371940868	2.11387942387664	-1.22340988540338	0.239325764642448	1
Merged-chr2-124707037-4	chr2	124706546	124707546	+	716.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53465.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.58469747507982	6.59847368722448	6.6669194555967	6.4698903125934	6.80812893745152	6.84553709776073	0.163650982170486	0.541924941168856	0.857018905554292
Merged-chr1-16651298-4	chr1	16650797	16651797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310470, intron 1 of 4)	intron (NM_001310470, intron 1 of 4)	5568.0	NM_026456	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	5.74992562323694	6.05185494738026	5.90921254296783	5.92846598280005	6.17760500581124	6.08495096226273	0.277361575287699	0.362119300315538	0.747675323428227
Merged-chr2-18939066-3	chr2	18938571	18939571	+	900.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	59050.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.04085872252381	3.70236060827173	3.89983792924356	3.86611439925271	3.39715330960648	3.71473749404584	-0.713729589185362	0.215881600740781	0.609248278199665
Merged-chr10-37139764-2	chr10	37139264	37140264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-838.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.26943265408611	7.36503207279115	7.3809917433273	7.34226252992974	7.51423516892613	7.60602956371474	0.223930201288368	0.332956414184686	0.723927708416112
Merged-chr4-86856119-2	chr4	86855619	86856619	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009096, intron 3 of 4)	intron (NM_009096, intron 3 of 4)	1248.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	4.46477654810446	4.51566201002096	4.41630146596993	4.46240119555278	4.54583944542791	4.3012491909354	-0.0495670386185346	0.909337789747679	0.979433534093496
Merged-chr8-128680138-3	chr8	128679594	128680594	+	922.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5560.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.70015254211184	6.64004694721529	6.81768646983802	6.9008311149413	7.0345354978138	7.02808041526397	0.423937119842341	0.0867810659841959	0.390296683336737
Merged-chr1-64532850-4	chr1	64532343	64533343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009952)	promoter-TSS (NM_009952)	39.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	8.40923804766428	8.27217107531939	8.10320864700715	8.29723875498463	8.08554611743683	7.92468453938355	-0.219908113870208	0.338979624737412	0.728951920358235
Merged-chr7-140949172-2	chr7	140948672	140949672	+	651.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_053088, exon 2 of 2)	3' UTR (NM_053088, exon 2 of 2)	1067.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	3.48015933497728	3.09337853664629	3.4807623795047	3.11805330106542	3.16865129644162	3.33833564219025	-0.618747327961719	0.341375133757487	0.730816878642537
Merged-chr9-110530814-4	chr9	110530308	110531308	+	799.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1789.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	4.92218062454779	4.71294242399351	4.9526178204881	5.46529151325328	5.55101698613511	5.16276944218905	1.14825405789146	0.00209972583722579	0.0320517313270746
Merged-chr17-69144544-4	chr17	69144071	69145071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-12173.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.66546786622257	6.88501507097949	6.59330470435599	7.0076701798612	7.06193583219164	6.65200660206081	0.315732752513064	0.24722257492877	0.644145276280485
Merged-chr4-132838270-4	chr4	132837751	132838751	+	863.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355198, intron 2 of 6)	intron (NM_001355198, intron 2 of 6)	4883.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	3.91354882446208	3.90137557982119	3.63876197324301	3.84508007984506	3.86351025314537	3.87159396811278	0.0868424033213815	0.868835932560841	0.969741115273568
Merged-chr19-41991662-2	chr19	41991162	41992162	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	B1_Mus2|SINE|Alu	9899.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.85859638877669	5.07186675804266	5.22901585425362	5.3899984633766	5.27585658583738	5.29260133785915	0.548943449359502	0.130247810368238	0.482488638817572
Merged-chr9-21286725-6	chr9	21286226	21287226	+	689.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145416, intron 2 of 18)	intron (NM_145416, intron 2 of 18)	1243.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	3.71135001652224	3.56758411687285	3.76297928824525	3.72479158450873	3.6066279359379	3.92809353939593	0.240478493238323	0.660725175842143	0.906114982224232
Merged-chr5-33630675-2	chr5	33630175	33631175	+	782.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	4.32698892063727	4.07080291292261	4.37255573569959	4.51626025766475	4.32663759297727	4.30756323769337	0.344449400413754	0.454340692641102	0.810200817669593
Merged-chr15-102462590-2	chr15	102462090	102463090	+	888.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170911, exon 4 of 4)	3' UTR (NM_001170911, exon 4 of 4)	3420.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	3.55135517117859	3.33436359541753	3.45619436915771	3.60235214252812	3.40634671978396	3.35625363666947	0.0395419359597094	0.94689439662423	0.988007649185823
Merged-chr17-81750269-4	chr17	81749757	81750757	+	854.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11870.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.02100462967789	3.02381055423721	3.03278524785018	2.94333707724196	3.00629112894661	2.92376638992127	-0.301603110508257	0.652731103709448	0.903005353518697
Merged-chr3-118044453-3	chr3	118043956	118044956	+	956.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175520.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	2.82840514180118	2.98677151854179	3.19929553900464	3.03473443865559	2.95286267422628	3.32302453520275	0.440401982091885	0.527719502978787	0.850108008834301
Merged-chr4-132530814-2	chr4	132530314	132531314	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007512, exon 4 of 4)	exon (NM_007512, exon 4 of 4)	4600.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	2.82900043277953	2.85287744666521	3.0075084932909	2.91430166135238	2.79784360259851	3.34867952647993	0.642986283801975	0.376020328358426	0.758951282467405
Merged-chr15-99384393-2	chr15	99383893	99384893	+	779.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	2.81079144939344	2.54892093943582	2.5188211090896	2.78175100410381	2.59425190818596	2.84892581629208	0.567861513919665	0.469264126005153	1
Merged-chr2-6695612-4	chr2	6695108	6696108	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	26054.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.02525809065208	4.95001406589607	4.7414335042837	5.01331897403387	5.11783623558442	4.96490446659118	0.255889170327026	0.501641238015019	0.835833270717604
Merged-chr13-112871761-4	chr13	112871247	112872247	+	934.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028151, intron 25 of 26)	intron (NM_028151, intron 25 of 26)	55633.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	2.56411097290028	2.66944418836595	2.77830526935318	2.70750163175199	2.8507950057495	2.96830011016036	0.919444830863516	0.215875507816454	0.609248278199665
Merged-chr17-34103049-4	chr17	34102562	34103562	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-7753.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	5.4143879905565	5.58800754455069	5.50586512733256	6.43729070804752	7.06555413350435	6.32386428463414	1.97697933629743	6.90776139039691e-09	6.51679149401526e-07
Merged-chr7-5083975-3	chr7	5083467	5084467	+	920.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252454, exon 2 of 11)	exon (NM_001252454, exon 2 of 11)	3732.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	6.091916835106	6.13108690960871	6.22676305374686	6.30824811703529	6.25525285111701	6.47334566325276	0.325881958058037	0.242161518880909	0.639228972242964
Merged-chr9-77825881-4	chr9	77825359	77826359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71324.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	6.10407201786768	6.07335229184701	5.85861566407811	6.52043695064741	6.25769908603238	6.42054190119992	0.627103651363968	0.0306515239333108	0.211692522094421
Merged-chr6-33969414-4	chr6	33968919	33969919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-60029.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	6.72170751376887	6.94750731940538	6.6987923470701	7.25890469006388	7.34240997345855	7.01504590340785	0.639600736856827	0.012780559058049	0.119501602213973
Merged-chr8-121111343-4	chr8	121110857	121111857	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2978.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	4.07655366428243	4.13805022390687	4.0552454799777	3.95466654411828	3.79839070277615	4.3002306739742	-0.203746572319223	0.690376551413341	0.917823389001164
Merged-chr12-33302252-4	chr12	33301762	33302762	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-253.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	7.68855613020937	7.77624044146826	7.48668549015657	7.83146058425083	8.01192740892803	7.5324848399704	0.223651926104805	0.367560124323019	0.752483584899857
Merged-chr1-71798787-4	chr1	71798265	71799265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-89347.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	3.31263167472373	3.38851297244173	3.40285920618593	3.55122810890499	3.40046647020795	3.24081857772878	0.154800108305505	0.79782756451926	0.95181421173875
Merged-chr8-84743733-2	chr8	84743231	84744231	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	30638.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.80480305821802	3.25882608157063	3.68151970699806	3.57216162173235	3.57587514178252	3.75120118971291	0.102971637333082	0.865041422384459	0.968570749438411
Merged-chr16-90281797-2	chr16	90281297	90282297	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	B1_Mus2|SINE|Alu	2689.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.27648310028398	4.43701429304645	4.15677384798097	4.42431606167758	4.19002023086406	4.57446188059875	0.244733051390758	0.600814458524053	0.881855262262798
Merged-chr4-105157473-5	chr4	105156931	105157931	+	891.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080555)	promoter-TSS (NM_080555)	84.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.28060171732007	6.39596915725291	6.43639870747014	6.46510210898858	6.34177533188768	6.38493379332804	0.045187784133454	0.86648395362044	0.969039306290674
Merged-chr14-122557545-4	chr14	122557082	122558082	+	844.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	23254.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	4.16144613048595	4.44566624345673	3.97065684290704	4.55462264294013	4.48735414378059	4.20092193034363	0.550495116468185	0.264485214580771	0.662371259557422
Merged-chr16-33056478-4	chr16	33055971	33056971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	-11.0	NM_001130484	57808.0	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	6.580630770181	6.68376410070496	6.46841872850417	6.60812413656764	6.62987707412646	6.58130513292756	0.0337034262311028	0.896518106912966	0.975838835430135
Merged-chr18-32377765-3	chr18	32377278	32378278	+	863.2698359999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045403, exon 1 of 3)	non-coding (NR_045403, exon 1 of 3)	506.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	6.61840155140713	6.60406520520176	6.62470385190709	6.81170828727752	6.67919211349906	6.73201814216608	0.197889409019966	0.431978938355686	0.797172952089782
Merged-chr7-109519621-1	chr7	109519121	109520121	+	1000.0	f0_balb.idr	promoter-TSS (NR_028079)	promoter-TSS (NR_028079)	426.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	7.9705468910292	8.41844694338968	8.17383121066278	8.03067625837951	8.02815974350892	8.03654708928437	-0.242310445199559	0.291876243959684	0.689235268138963
Merged-chr13-37347984-4	chr13	37347482	37348482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2637.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	7.43397426928842	7.67852481147253	7.39941651627333	7.70100935386937	8.09323872751995	7.84327343732271	0.547519141190158	0.0249676950293664	0.186874424221059
Merged-chr2-24974182-2	chr2	24973682	24974682	+	569.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001031808, exon 2 of 2)	3' UTR (NM_001031808, exon 2 of 2)	916.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	5.62980448285135	5.31209118052406	5.32663938758219	5.35777506951434	5.13844586405545	5.0850788170683	-0.466516615160663	0.195224128906327	0.582885610090219
Merged-chr11-115628841-2	chr11	115628341	115629341	+	606.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	-546.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.73779268515049	5.1574997491814	5.72872109453782	6.11893586788022	5.80452556609109	5.71206231144667	0.597478650730647	0.100117631445987	0.421972843549676
Merged-chr5-125179281-4	chr5	125178770	125179770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-56.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	6.85235323475326	7.00230413118856	7.26191358872614	7.246464181482	7.45166709113617	7.54369730565814	0.562719939358895	0.0274034715421245	0.197367615344681
Merged-chr12-102449936-2	chr12	102449436	102450436	+	832.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10123.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.47985467687739	6.5724131123731	6.84304003241077	6.31575293894103	6.46596937610615	6.65071667465461	-0.245685045769522	0.381322600079182	0.763080052613635
Merged-chr6-13610116-1	chr6	13609616	13610616	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-2018.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	2.37977237973488	2.34780939790864	2.60745684248623	2.52850819296708	2.34206575551502	2.68080068869022	0.445141290881691	0.58856477944422	1
Merged-chr16-8666657-4	chr16	8666124	8667124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	5529.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	6.3115425204222	6.19458385365585	6.27762955842594	6.30038607939874	6.30150557137256	5.98479625578753	-0.0773008827948571	0.787506048264494	0.94877064431094
Merged-chr6-113661220-4	chr6	113660705	113661705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	22738.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	8.70461935148692	8.53187547611583	8.34350959388455	8.57640177331471	8.76022856931703	8.15325973106649	-0.0134992502869456	0.957220223722168	0.989925627980654
Merged-chr14-78631548-2	chr14	78631049	78632049	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104044, intron 1 of 27)	Lx8|LINE|L1	-2259.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	2.82813264198516	2.89997777449989	3.14656102496413	2.88459641816764	2.67369853632193	2.74777687870222	-0.953803241552612	0.19376985000611	0.581033530782477
Merged-chr11-75153383-4	chr11	75152873	75153873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14779.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.89816045072799	7.87842118931024	7.77670366703467	7.84230660486339	7.81203328623643	7.52232306912191	-0.164013223758231	0.470057212280365	0.819264793771069
Merged-chr3-138012580-4	chr3	138012084	138013084	+	805.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-31035.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.46570834730904	3.57242378533478	3.72661776429517	3.47830066114261	3.30860142639881	3.31392153925528	-0.81663393999884	0.169211895815736	0.545918476485432
Merged-chr8-79389506-3	chr8	79388992	79389992	+	706.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	9976.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.29442387629517	4.5944258536117	4.2286282776322	4.48965646003543	4.44653875832402	4.64361523436787	0.330812090619083	0.463779200100525	0.816038286358001
Merged-chr17-23749007-7	chr17	23748563	23749563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-173.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	6.28727459410468	6.41787982443622	6.32288799558202	6.54507726291548	6.7421435988532	6.23757293611027	0.313908655200843	0.276324209227249	0.673690550598639
Merged-chr15-78879873-2	chr15	78879373	78880373	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2683.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	5.25206091799896	5.03117329200791	5.36329377892322	5.09275475244311	5.04510189779366	5.1812425808671	-0.231950260382163	0.524554837212321	0.848725345027108
Merged-chr18-37928040-4	chr18	37927531	37928531	+	884.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	MIR3|SINE|MIR	7445.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	3.85570173941224	4.24647708428431	4.10838416963403	4.53943416667396	4.22434740048776	4.22578404523061	0.704067773831054	0.15549658655952	0.525189153046133
Merged-chr11-68431850-4	chr11	68431431	68432431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-194.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	7.12446338171258	7.17580446932751	7.56100079849551	7.12900508286829	7.14898305813588	7.10520524074543	-0.246109700859332	0.333143974311429	0.724049727426025
Merged-chr2-119016477-1	chr2	119015977	119016977	+	655.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	12916.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	5.42103157401493	5.34344238074687	5.01659497378437	5.35169905446423	5.66446412641079	5.45566665510976	0.427150509281132	0.236712831696348	0.633100086761981
Merged-chr3-60474009-2	chr3	60473509	60474509	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1179.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.06780922969647	7.38767748354941	7.10315522516281	7.64291500500073	7.89566916200729	7.31129601700159	0.660317215750549	0.0143731020737744	0.128985879783716
Merged-chr2-180119228-4	chr2	180118727	180119727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-139.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	7.30559120264445	7.52564131852332	7.48105888651653	7.35289036306625	7.30559355763027	6.96104818205316	-0.315732360602272	0.206721087515166	0.597313895543352
Merged-chr2-70967853-1	chr2	70967353	70968353	+	692.666687	f0_c57.idr	intron (NM_145524, intron 7 of 9)	B4A|SINE|B4	50521.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.03458991820863	6.85029380187583	6.88916091614361	6.86033201144145	7.12783314253388	7.03004592831832	0.130673056349239	0.602281750645286	0.882299035371658
Merged-chr9-65032991-2	chr9	65032491	65033491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028906, intron 1 of 20)	CpG	533.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	7.6870901822571	7.50975591115056	7.66086793164384	7.66898764758645	7.59176693703464	7.41041610875171	-0.0780408990707112	0.733224480718385	0.932039456283818
Merged-chr1-181016152-2	chr1	181015652	181016652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1417.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	7.92214492048171	7.7965366201376	7.63015045367349	7.82030157896594	8.29107127568815	7.51392311790492	0.193627135489268	0.489014221582738	0.829458075453696
Merged-chr11-55467943-2	chr11	55467443	55468443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1809.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	6.74569136600308	7.04819089606325	7.02880164556036	6.61707681597169	7.00008085248339	7.00889935908557	-0.0888146800407587	0.744313878557337	0.935916036002084
Merged-chr14-19976719-4	chr14	19976204	19977204	+	961.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	-11.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.03050790976844	6.99308934018608	6.75056385668382	6.65866583975092	6.7528144905727	6.35566843799166	-0.506256362682952	0.063842882873056	0.329216571523379
Merged-chr5-21387582-4	chr5	21387084	21388084	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	14911.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.65576064243665	4.59970476947958	4.65250493176731	5.02395342426043	4.96592887257361	4.63549960594816	0.597551720951807	0.140916171275139	0.501523433818732
Merged-chr13-25020337-4	chr13	25019845	25020845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013389)	promoter-TSS (NM_001013389)	-28.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	7.06724712084134	7.03050290734831	6.94572159320952	7.2566998812946	6.5489838469766	6.51586442455085	-0.290043917354493	0.350050160236091	0.738176636751095
Merged-chr15-74709395-4	chr15	74708871	74709871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008415)	promoter-TSS (NM_008415)	-49.0	NM_008415	16469.0	Mm.87052	NM_008415	ENSMUSG00000046380	Jrk	-	jerky	protein-coding	5.43665106503027	5.55018882470316	5.38182731004369	5.38103390443924	5.16024755527632	5.22077712425259	-0.409014827057784	0.23265864347917	0.628965135652341
Merged-chr7-144938257-4	chr7	144937768	144938768	+	870.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	1657.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.44864084320716	6.68875261308621	6.54942998417008	6.55956450027944	6.89863373170367	6.30114746121695	0.0921673006567801	0.755787144969914	0.939419158965935
Merged-chr2-169926721-2	chr2	169926221	169927221	+	637.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36466.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.0290144878809	2.98345024728486	3.12279415676141	3.21394765659605	3.14196541817819	3.56700510280931	1.14744346658311	0.0835125263595728	0.382519080921008
Merged-chr1-184537039-2	chr1	184536539	184537539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	PB1D9|SINE|Alu	20652.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.03796888236081	6.19192898965132	5.72212671561688	5.96281637769573	5.47860564798437	5.75773287645535	-0.47043687668788	0.165486920593334	0.540544700036512
Merged-chr2-122777052-4	chr2	122776553	122777553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-4946.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	5.34826765835719	5.58545839683016	5.36950828153431	5.28947824697965	5.09123603011401	5.30915508805601	-0.436768643324381	0.21174932993584	0.604122689706887
Merged-chr11-109649377-2	chr11	109648877	109649877	+	878.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313974)	promoter-TSS (NM_001313974)	-28.0	NM_001313973	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	3.02645404114902	2.91743316157078	3.18333603967592	3.02263921310123	2.99375761189226	3.08502949572596	-0.0413533659260992	0.950561342003899	0.988444308820256
Merged-chr17-34606879-2	chr17	34606379	34607379	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	1018.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	4.54336605706677	4.26885461314133	4.42338912256211	4.20409695095544	4.06952658230734	4.48981487576138	-0.430100972930474	0.360976881314161	0.746938274913623
Merged-chr8-104241397-2	chr8	104240897	104241897	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 3 of 8)	intron (NR_045642, intron 3 of 8)	7161.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	5.2913989046845	5.19256331363649	5.44706208097192	4.97284913245572	5.0069297290045	5.3683727600514	-0.391871424713596	0.289822198357442	0.687502508222654
Merged-chr14-20842810-4	chr14	20842305	20843305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008873, exon 11 of 11)	3' UTR (NM_008873, exon 11 of 11)	6143.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.98222633548303	6.15833510399257	5.67706556884853	6.61881434246705	6.72046270329455	6.38854787384994	1.0270043038749	0.000820121256160565	0.0154251016009512
Merged-chr10-7728276-2	chr10	7727776	7728776	+	603.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	intron (NM_011835, intron 1 of 10)	2276.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	2.70311885255174	2.59681861889347	2.88848822499765	2.69960360451684	2.74743015599083	2.84338944921099	0.176517756964246	0.810953009618278	0.955096593239846
Merged-chr12-3737187-3	chr12	3736705	3737705	+	832.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-69775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.79550353853336	5.77423279521212	5.38760195037441	5.62778674292397	5.93953834085632	5.08672255895093	-0.106218194823362	0.789775249777024	0.949311112850285
Merged-chr13-43478717-3	chr13	43478235	43479235	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	2238.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	5.20574836191125	5.49923655077177	5.24485801835632	5.42617517095005	5.37308817562329	5.24266721404664	0.0483022107875141	0.890378529481192	0.974513293810689
Merged-chr14-75011817-1	chr14	75011317	75012317	+	565.5	f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	L1_Mus3|LINE|L1	-4210.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.23994370717289	4.98634333947645	5.32330692435665	5.42832730011065	5.01010048634917	5.16473916973647	0.0525872476106988	0.889523381366954	0.974240173857916
Merged-chr11-20117462-1	chr11	20116962	20117962	+	742.0	f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4511.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	3.02831419353717	2.88248333023887	2.95525976538626	3.13547197244193	3.24131505422612	3.52809886628651	1.53783888223057	0.0240794866927796	0.18252764222764
Merged-chr3-101846294-3	chr3	101845795	101846795	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10072.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	3.75437411847732	4.10646389954872	4.22248920267262	3.94377301488287	4.02365085756819	4.52535847385032	0.404922511045142	0.454152542362814	0.810100393169515
Merged-chr1-33768958-2	chr1	33768458	33769458	+	720.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-11208.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	4.22378719804558	4.85955537232075	4.78950188166022	5.17765080137506	5.08079044140431	4.96727174796138	0.944604342107215	0.0325596843655153	0.219494953956558
Merged-chr18-69586213-4	chr18	69585713	69586713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240053.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	7.28603632055009	7.32587735925629	6.92216561973204	6.84439448844078	7.11824884551803	6.82933735052134	-0.383406194216409	0.149622556069224	0.516117590626348
Merged-chr6-26205724-4	chr6	26205233	26206233	+	941.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	274307.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	5.34383841678643	5.28598421892004	5.42678171327967	5.3631133027866	5.59157600227402	5.62820642933283	0.35433771022435	0.29108070616911	0.688857889616589
Merged-chr13-105212949-2	chr13	105212449	105213449	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	80065.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.45694915150892	3.10463756906836	2.95663364512002	3.20044767227215	3.01598161968725	3.54664877890821	0.309569670108425	0.666899931189443	0.908463623849139
Merged-chr11-101442257-4	chr11	101441771	101442771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011289)	promoter-TSS (NM_011289)	26.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	7.61958367366072	7.58166678824432	7.02943484042949	7.32879928603898	7.37142524259073	6.92483539141341	-0.31738885513635	0.267819688315111	0.664975925109882
Merged-chr18-32239516-2	chr18	32239016	32240016	+	758.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-815.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	5.4839175075493	5.73831115295991	5.8399184697421	5.54084827869444	5.80266531949756	5.72831366012044	0.0169377641908991	0.958831971554034	0.990162613547306
Merged-chr19-5106127-3	chr19	5105639	5106639	+	760.877747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029576, intron 1 of 5)	intron (NM_029576, intron 1 of 5)	857.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	5.39184727965682	5.15614612086079	5.78531020956425	5.47685066384885	5.25801166505596	5.31085783504064	-0.207628710687981	0.578585025691295	0.872437129840066
Merged-chr10-34118647-4	chr10	34118140	34119140	+	766.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9332.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.64932843957603	4.60417478839917	4.40902865731208	4.62068536954368	4.456927683824	4.7254890082199	0.0756436706228622	0.859252123906208	0.967267211164924
Merged-chr11-76623477-4	chr11	76623000	76624000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45761.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.3388077490419	7.27862238802035	6.99058409126582	7.31478933573713	6.94573635798246	6.88812577797254	-0.22801285616429	0.394722067338682	0.772514857254462
Merged-chr6-90716487-4	chr6	90715992	90716992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134383)	promoter-TSS (NM_001134383)	37.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	6.8642723560721	6.80623192371775	6.82139113591711	6.72425203669706	6.42657962621001	6.19022156733272	-0.565145522826169	0.0441072698235535	0.264281537227496
Merged-chr4-95053973-4	chr4	95053440	95054440	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1718.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.6718166442178	6.42788432375444	6.78706638673554	7.01540299898527	7.19495951224483	7.01469442854442	0.701135875155118	0.00709245759351636	0.0789308169218776
Merged-chr15-98872247-4	chr15	98871780	98872780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1075.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	7.29814247922162	7.67731600147658	7.69517583344312	7.22977460878218	7.57593018271233	7.73493233538429	-0.0570732473880682	0.8300251271263	0.9601792153085
Merged-chr18-70644544-4	chr18	70644068	70645068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76276.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	7.20305934183108	7.265991985661	7.10850171969128	7.69047282422987	7.94270319430053	7.51409464085002	0.788864460805594	0.00123505312065224	0.0212502688302795
Merged-chr6-31318672-4	chr6	31318173	31319173	+	941.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	80100.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.0497568098043	3.61076951301638	3.73427044866594	3.89850058867015	3.81401242247089	3.80525416580586	0.0751525346872187	0.890482476305009	0.974528422443459
Merged-chr11-53783900-4	chr11	53783430	53784430	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13457.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.71660618536729	6.49436922382666	6.9034544429667	7.17981475705801	7.44870559180729	7.286117739594	0.925602074517007	0.000378631598977383	0.00842835154834406
Merged-chr5-136248311-4	chr5	136247808	136248808	+	903.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291240, exon 23 of 23)	3' UTR (NM_001291240, exon 23 of 23)	-3368.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	5.10427882139801	4.96853349073766	5.32036949650952	5.29644000676711	5.13902792684044	5.29282657920125	0.229844519820013	0.527373808171563	0.849926783465803
Merged-chr11-20806999-4	chr11	20806628	20807628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	23980.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.25580935021487	2.46600943426458	2.43063722908818	2.43312624434543	2.32899767023807	2.62906509378246	0.481043049628901	0.563946917157397	1
Merged-chr7-90017367-4	chr7	90016851	90017851	+	870.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-11808.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.93533821959448	6.80968780734502	7.01807978321353	6.71140837920077	6.91614425805632	6.68235970774654	-0.212217755506583	0.40680690773328	0.781078274423029
Merged-chr16-20509146-4	chr16	20508665	20509665	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172265, exon 16 of 16)	3' UTR (NM_172265, exon 16 of 16)	-7821.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	4.36263214117079	4.45299985121029	4.60490429836305	4.56862564654734	4.35955427355193	4.59214815800765	0.0829471709754036	0.848654242781057	0.964356989789491
Merged-chr9-101034602-4	chr9	101034121	101035121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 1 of 13)	CpG	263.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	8.34966004144813	8.68875082945212	8.23056631049146	8.28796574070696	8.29264431301109	8.19354072993288	-0.256129567376636	0.26413197675715	0.661984744638823
Merged-chr1-9593943-4	chr1	9593435	9594435	+	861.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-7332.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	4.60385067022042	4.81449099121256	4.67392607416385	4.53027958474727	4.76552860876232	4.57597929098597	-0.157827534895062	0.704315188824444	0.9223772679418
Merged-chr18-46963096-5	chr18	46962554	46963554	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4178.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	5.97250174079731	6.31972086515238	6.13754559922199	5.77371331912773	5.89389127459268	6.17716618659059	-0.349479280560959	0.262383909499137	0.660368420241499
Merged-chr7-126751721-2	chr7	126751221	126752221	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-7905.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	3.26682791682173	3.2417151828665	3.69724904142503	3.08029590368634	3.25201079624084	3.67214607627273	-0.226099986059298	0.738616499891811	0.93406400924634
Merged-chr5-122145546-4	chr5	122145052	122146052	+	952.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7490.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	6.16548979587276	6.21755490065033	6.62216087196114	6.6025439904651	6.73542262744454	6.95198723955293	0.68551936392098	0.0183879421817915	0.152941212821122
Merged-chr11-61861187-4	chr11	61860688	61861688	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-6096.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	7.02590541377604	6.74861961272044	6.78760726777998	6.93173549686502	7.11152803578226	6.75125638248107	0.133102883725773	0.61520786107143	0.887855829471895
Merged-chr5-122154806-3	chr5	122154295	122155295	+	779.638855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3484.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	2.82953036844586	2.82884405032266	2.95255336255121	3.35223330462407	3.19115392062725	3.08642116148738	1.70392677167715	0.0139449720956034	0.126411726564001
Merged-chr8-72443828-4	chr8	72443355	72444355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028500)	promoter-TSS (NM_028500)	-25.0	NM_028170	72254.0	Mm.30136	NM_028170	ENSMUSG00000052794	1700030K09Rik	-	RIKEN cDNA 1700030K09 gene	protein-coding	5.37329271576837	5.57731283814183	5.15182356753264	5.58887041142402	5.43908159624199	5.35336378901376	0.145279511874434	0.680139463257713	0.914139397449033
Merged-chr10-62336748-2	chr10	62336248	62337248	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3673.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	4.49970925963755	4.71857227278239	4.75837387806743	4.6951658549093	4.52482883853972	4.50356467972888	-0.196736151576548	0.639633879741665	0.898199312621371
Merged-chr5-93267584-4	chr5	93267099	93268099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	26.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	8.06471384843736	8.31616234383113	8.06994965876049	7.82320960950895	8.0852690617862	7.67694133677703	-0.392505097253992	0.0989435424366761	0.419422020575635
Merged-chr2-165928033-4	chr2	165927531	165928531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-43193.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.69616069707654	6.53120290831796	6.56895945641664	5.94812932918828	5.48632894418896	5.19546666607273	-1.72911169116868	8.2662824933203e-07	4.58547222469464e-05
Merged-chr6-92212200-2	chr6	92211700	92212700	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 1 of 11)	intron (NM_030081, intron 1 of 11)	2611.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	4.56922076718071	4.56082685281212	5.08802262557882	4.9370075106894	4.72209664495709	5.0886000798706	0.376080457262636	0.383765681283849	0.764993886451692
Merged-chr1-13328586-4	chr1	13328120	13329120	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	43809.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.25077755772456	4.55963164853197	4.47716701865979	4.41181456068309	4.2490292655583	4.54347910295924	-0.0963665634249867	0.831245684698591	0.960444904168444
Merged-chr2-91071845-2	chr2	91071345	91072345	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	4.24981800740999	3.92068516405741	4.53339793148989	4.3884207294402	4.53334728328862	4.63710890567879	0.708773221984366	0.143836720204877	0.506290928785533
Merged-chr1-132319375-2	chr1	132318875	132319875	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	3250.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	5.21063584580383	5.20069946392039	5.2298150845753	4.8742844807202	4.71257099476711	5.23143674273352	-0.576978074637142	0.136044218348014	0.492921904596115
Merged-chr11-109650375-4	chr11	109649844	109650844	+	925.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021880)	promoter-TSS (NM_021880)	-577.0	NM_021880	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	5.95441434533989	5.7629152569105	5.8073753217595	5.80323792032753	5.5452896927231	5.74128993484416	-0.27391157306907	0.383555187762286	0.76494131641868
Merged-chr19-46050557-1	chr19	46050057	46051057	+	551.0	f1_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-5246.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	2.64594073551371	2.60356366481376	2.89106017764436	2.36825425637064	2.58318170787877	2.9626958560604	-0.30667860756752	0.718666887887957	0.927415661027328
Merged-chr19-11048684-2	chr19	11048184	11049184	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	MLTR14|LTR|ERV1	1882.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.8165297779344	5.71526446979349	5.9263777185395	5.74931190543035	5.89257944235325	6.11701400373819	0.1865529903345	0.548977001423792	0.860131595139289
Merged-chr13-93231227-4	chr13	93230726	93231726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.43805802584458	6.34958487033242	6.46719293466253	6.56980331132078	6.6611710568868	6.78581301844989	0.409211340626272	0.118478524376215	0.459921210483695
Merged-chr2-153497087-2	chr2	153496587	153497587	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	32884.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	2.98243776721825	3.01565034871093	2.83760102895902	3.019481196808	2.87577947757867	3.15121394292463	0.292849338759973	0.672290796640819	0.910756996322765
Merged-chr4-88537586-4	chr4	88537081	88538081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14787.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	7.00093630050732	7.1420233137682	6.79122185312998	7.0669385675234	7.14737615932374	6.9974940518334	0.122904296298537	0.62480787838459	0.892226791537215
Merged-chr14-64834047-5	chr14	64833457	64834457	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115900.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.78270773537275	5.7427390660756	5.72431465080927	5.28704802512229	5.24626287138362	5.51781174420113	-0.773034511857077	0.0179959208710789	0.150750486644592
Merged-chr14-27412896-4	chr14	27412394	27413394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-15940.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	5.65468788558467	6.09692765182998	5.96114714833248	6.37344069954168	6.4736651237783	6.02284513190208	0.672630548168583	0.0355123889020725	0.231322597131959
Merged-chr10-4430542-4	chr10	4430045	4431045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 1 of 13)	L2|LINE|L2	-1379.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	7.3027846385364	7.52950465761355	7.33645396793895	7.46582294643926	7.55468384455532	7.65347718148764	0.235964937087685	0.308566804806927	0.70458397876447
Merged-chr5-103824842-4	chr5	103824343	103825343	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	70270.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.01383050367421	3.08321475030334	3.18320819532728	3.41022415091112	2.99394156777067	2.95003220099955	0.19180007201406	0.780799427234618	0.946078518476608
Merged-chr1-180261129-4	chr1	180260659	180261659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4859.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	7.10716721695778	6.89925034632476	6.74817918011787	6.69418255946385	6.98584442172252	7.03672032924567	-0.0311531058913079	0.907179613690103	0.978868492078838
Merged-chr4-6428855-2	chr4	6428355	6429355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 9 of 30)	intron (NM_010945, intron 9 of 30)	25416.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	2.58113342809391	2.54848555189809	2.69114814324778	2.93824086282873	2.78189394508725	2.82785000406644	1.34924396584746	0.0715319892343947	0.350858143464767
Merged-chr8-66323223-4	chr8	66322710	66323710	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-63091.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	3.60572896102591	3.81817661062563	3.92580221103514	3.85755629100173	3.7876439414502	3.84862903724123	0.146824568378567	0.781585455851351	0.94625425751483
Merged-chr10-62601527-2	chr10	62601027	62602027	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	intron (NM_019553, intron 1 of 14)	771.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	5.89603474865713	6.19754048957844	5.61822495499934	6.17130833236496	6.42128156856282	6.07721707151311	0.50972541163376	0.120580340605591	0.464399190962767
Merged-chr6-37150245-2	chr6	37149745	37150745	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	149731.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	2.69883534186824	2.62435417570929	2.70230133501007	2.69524020318494	2.66458140945203	3.06636191256684	0.729697953169264	0.333673283239911	0.724517434137507
Merged-chr2-59402027-4	chr2	59401524	59402524	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15342.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.44801630097019	6.61494566264607	6.6982509764023	6.1882537484349	6.61036571544376	6.49360906100723	-0.2240891636089	0.431405833377936	0.796881045962937
Merged-chr4-101293224-4	chr4	101292779	101293779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27997.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	8.53343889996505	8.67903610262939	8.41056446097536	8.47204727986166	8.6697410982429	8.35943492615645	-0.0517915005401368	0.812615114660566	0.955685883418029
Merged-chr8-94779313-4	chr8	94778809	94779809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	7129.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	5.42836256339483	5.06404972178579	5.23764028188941	5.09695650630782	5.28029106500463	5.45120676135233	0.0519527307252843	0.887558983043692	0.973836995667151
Merged-chr11-63132482-2	chr11	63131982	63132982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302259)	promoter-TSS (NM_001302259)	-87.0	NM_001302259	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	6.82178094697595	7.07078302698333	7.22335662856578	7.31765353899133	7.59270559045298	7.25758600777428	0.540925454656645	0.0369268207167166	0.23682803285005
Merged-chr2-23052748-4	chr2	23052227	23053227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12486.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.80734264123119	5.85319473097737	5.85727229921691	5.86510194469648	5.93755218564489	5.91857730896919	0.123811021108932	0.675282406466522	0.912152821313949
Merged-chr5-137333603-4	chr5	137333087	137334087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031406)	promoter-TSS (NM_031406)	-5.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	4.84212715950271	5.01270765934336	5.44167118796755	5.21967228238633	5.37363265534551	5.035056694349	0.235869066623919	0.553203227614562	0.862212414320949
Merged-chr18-4367967-2	chr18	4367467	4368467	+	568.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040328, exon 3 of 4)	non-coding (NR_040328, exon 3 of 4)	-7625.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	6.28890396114766	5.97918089826779	6.4094602721187	6.49999456027372	6.32767899600238	6.66772562131861	0.440203348698397	0.137675057383887	0.496002172445378
Merged-chr13-95033772-2	chr13	95033272	95034272	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	57428.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	6.42484104598362	6.48528725516757	5.93634208581078	5.65485161135315	6.20046072325245	5.2481264375707	-0.90571810980441	0.0249695459740839	0.186874424221059
Merged-chr11-106131964-4	chr11	106131458	106132458	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	27969.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.80554115903476	5.56789536337537	5.54639750752251	5.72706152678742	5.89563511327371	5.48881657793244	0.141765803935059	0.670729435776783	0.910099879198907
Merged-chr5-148550946-2	chr5	148550446	148551446	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	727.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	7.22905039666963	7.59136597251839	7.32250953876238	7.7711774262487	7.99702757872338	7.89579451243256	0.721544460867718	0.00264447788444044	0.0382377260709477
Merged-chr19-55654612-4	chr19	55654129	55655129	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	47575.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.83303179976251	6.71832134210176	6.29446053932428	6.39048670142068	6.75719513061609	6.31283572845166	-0.210370336069327	0.49407657064792	0.831815174927983
Merged-chr5-28073134-3	chr5	28072477	28073477	+	823.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	1565.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	3.61614231233281	3.6197333602812	3.31343849904927	3.62591840333252	3.37460217381663	3.91499639234609	0.420996955476986	0.496441687321362	0.833046085446241
Merged-chr13-37583032-1	chr13	37582532	37583532	+	595.0	f1_balb.idr	Intergenic	Intergenic	237687.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.64754238917087	3.93170752991751	3.80538503150675	4.11875414079147	4.01644272675709	3.97792512421018	0.730392484076448	0.157260344022696	0.52842219058436
Merged-chr12-4133122-1	chr12	4132622	4133622	+	972.3333130000001	f0_balb.idr	promoter-TSS (NM_001159536)	promoter-TSS (NM_001159536)	-275.0	NM_001159537	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.01253624121961	4.27738895402589	3.97851235148869	3.49622798857163	3.0699843166175	3.63653428380626	-2.48092119659815	0.000207763044091106	0.00516972110428611
Merged-chr1-60851813-2	chr1	60851313	60852313	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57212.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.84211151662344	4.44691896966266	4.31244827901652	4.64561855727768	4.6429366752731	4.56455595152394	0.133525878162558	0.765569121597711	0.942148336413151
Merged-chr18-36738290-2	chr18	36737794	36738794	+	831.466675	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 5 of 11)	intron (NM_028036, intron 5 of 11)	3224.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	2.50731670053682	2.26749688528365	2.42816532595379	2.43070281276918	2.3276316300823	2.56553204742634	0.225566771453926	0.785375266602388	1
Merged-chr12-108765962-4	chr12	108765464	108766464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27347.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	7.87624075245363	8.46473776486337	8.18537490932446	7.92264922720619	8.32453013704108	8.24128416178272	-0.0349228104258695	0.893261575080997	0.975210713351106
Merged-chr9-21164140-4	chr9	21163604	21164604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	3.62804502860097	3.5375043570464	3.56707617363572	3.77350230001292	3.48343679810222	3.58354693824327	0.135214200210746	0.810480777931976	0.955054272231421
Merged-chr7-16404925-2	chr7	16404425	16405425	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	3729.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	5.19150330785143	5.44043487513343	5.82725237643514	5.74436218071568	5.84944298889526	6.20020213133901	0.799736879961283	0.0271538747900451	0.196308064865786
Merged-chr12-98832571-3	chr12	98832070	98833070	+	851.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	MTD|LTR|ERVL-MaLR	61548.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	2.63121530718572	2.52237957660542	2.60056491548409	2.70984860037017	2.66030060462289	3.08729606566785	1.29544605906223	0.0961445892115172	0.413411154195982
Merged-chr1-152042207-4	chr1	152041854	152042854	+	836.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	47966.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.96363984052412	3.67157417756338	3.76625638586963	3.69209864498218	3.67356457633648	3.56522285863398	-0.532461039666749	0.332322133688017	0.723521765316285
Merged-chr4-139169507-4	chr4	139169001	139170001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11154.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	7.70302169861777	7.34224639482019	7.37049275163809	7.77240475664977	7.97898921857736	7.47162842829179	0.405230919961442	0.120813848312486	0.464893155207108
Merged-chr13-67082256-4	chr13	67081760	67082760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012448)	promoter-TSS (NM_001012448)	-715.0	NM_001292066	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	5.49425108846563	5.95704327743242	5.62415488621278	5.47246678428666	5.69430396360641	6.04455433122611	0.0687020489813048	0.84773573633334	0.964318271116593
Merged-chr5-35670672-4	chr5	35670172	35671172	+	952.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042615, intron 2 of 6)	intron (NM_001042615, intron 2 of 6)	9108.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	2.41950877117879	2.62799975737686	2.53708866054326	2.73537884709153	2.57467706730787	2.8586620925943	1.07374453815502	0.173979353252348	1
Merged-chr8-108718304-3	chr8	108717807	108718807	+	818.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	3663.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.4267023583084	4.4451350089792	4.49818365006252	4.30246705888147	4.15926977929938	4.48301589333088	-0.377854893878445	0.398051752764596	0.774798592777124
Merged-chr18-46518189-2	chr18	46517689	46518689	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	7782.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	5.04910012332876	4.65963073451686	5.1001860166922	5.12545627348689	5.05537380041446	5.09779067533823	0.318630054033612	0.413106217965269	0.784770288990094
Merged-chr9-88710577-2	chr9	88710077	88711077	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	MLTR14|LTR|ERV1	9010.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	6.90787627631244	6.97838627189054	6.3243748498495	6.61991533566849	6.75221866773586	6.15889175308436	-0.36646288032801	0.26343781797957	0.661383847170923
Merged-chr11-115706826-2	chr11	115706326	115707326	+	827.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	B3|SINE|B2	1771.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.92382849382774	6.89785637104416	6.82442597615146	7.0690656544371	7.36135061617925	7.10615015189575	0.466444560773269	0.0603327511655809	0.317968178849797
Merged-chr9-25510217-2	chr9	25509717	25510717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RMER17B|LTR|ERVK	28620.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.46149679475905	7.31209674018092	6.99502062565401	7.07745600267959	7.20310639478402	6.55849052886413	-0.433914616969866	0.142364698205996	0.503715686878622
Merged-chr10-18055526-4	chr10	18055054	18056054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111065)	promoter-TSS (NM_001111065)	-386.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	6.22857017521238	5.97543261123033	5.94407962592834	6.11384125195163	5.45103536375717	6.02830736311692	-0.297071060912357	0.392859429149017	0.771377884930667
Merged-chr18-60757092-6	chr18	60756507	60757507	+	771.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8342.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.74732844442879	5.82863755745149	5.64613692907964	5.2820365515931	5.23301202857732	5.22354996251563	-0.959979714412455	0.00347060773337938	0.0469030905114555
Merged-chr19-53763163-4	chr19	53762641	53763641	+	873.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	85835.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	1.91766801384449	1.89518516046152	2.07834855192726	2.09127677163276	1.93534100242946	2.21918440489098	0.947554541761168	0.317236363066232	1
Merged-chr11-59472504-4	chr11	59471994	59472994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178417)	promoter-TSS (NM_178417)	-20.0	NM_178417	237775.0	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	4.46021212132248	4.64029727623149	4.45212182840903	4.49966484678265	4.17362616224504	4.038159160329	-0.691735743848853	0.14243762544553	0.503787601222075
Merged-chr17-57338202-4	chr17	57337692	57338692	+	923.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20494.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.46684958589044	6.33873969971732	5.9634960920448	6.31096579946884	6.71271907401887	6.47554353672248	0.376145082869889	0.220155433769639	0.614507907782981
Merged-chr5-65700251-1	chr5	65699751	65700751	+	736.0	f1_balb.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-2395.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	3.62152650656164	3.84822386989706	3.91216174189036	3.73773950086609	3.67448674471619	3.93322086786931	-0.0542152820411782	0.919882610531989	0.982120898917633
Merged-chr7-66136437-1	chr7	66135937	66136937	+	764.0	f0_balb.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26922.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	6.94554408558729	6.96665043078107	7.21696888631904	7.17138762934842	7.18853188562978	7.29692119534204	0.26595785824564	0.273365399047387	0.67064269021243
Merged-chr1-121462910-3	chr1	121462398	121463398	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 10 of 23)	intron (NM_029955, intron 10 of 23)	31831.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	5.05150203422939	5.13946585232709	5.03580871717412	6.11438870315307	6.27853956057177	5.8516199956925	1.91436685561484	1.43540283228028e-08	1.24934099234705e-06
Merged-chr13-34993692-3	chr13	34993153	34994153	+	918.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110331, intron 1 of 9)	intron (NM_001110331, intron 1 of 9)	491.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	7.12965973149155	7.50116095983946	7.4597230529244	7.33219103498806	7.48873426072748	7.50677351194529	0.106239798751238	0.665275214759929	0.907762144972922
Merged-chr9-97018943-3	chr9	97018426	97019426	+	683.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145134)	promoter-TSS (NM_145134)	-571.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	1.99617418697678	1.97380438863376	2.01780492098705	2.25985191711141	2.13050038368892	2.29569134290656	1.83554734150104	0.051202808857048	1
Merged-chr7-101949165-4	chr7	101948664	101949664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15307.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	5.29755318447839	5.4516259928696	5.42393639802208	5.99120259035291	6.05877356694955	5.82330925955917	1.060074037603	0.000808792413819815	0.0153019552453659
Merged-chr2-29622672-2	chr2	29622172	29623172	+	884.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	2952.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.76692794817332	5.72242396429233	5.26793200280445	5.65824513799859	5.72371301537713	5.64507888713895	0.10801409875232	0.750943170279632	0.937674068369247
Merged-chr7-109959199-4	chr7	109958695	109959695	+	889.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1227.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	7.07462099973922	7.10291770864751	6.98182184265885	7.26706914405591	7.30645728216545	6.87923749787058	0.178361221247874	0.485434237198057	0.827466595462693
Merged-chr3-89391167-3	chr3	89390639	89391639	+	703.1190190000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040403)	promoter-TSS (NR_040403)	-725.0	NR_040403	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	5.16370649437665	5.10372486933129	5.30215480627059	5.41249362922173	5.47901450033837	5.81534308264083	0.755410967288111	0.0319469163203695	0.216861938514763
Merged-chr18-66458148-3	chr18	66457653	66458653	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-451.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	8.50091749796	8.44739672390538	8.07426239435262	8.16813370363979	8.38297842744433	7.91152875189095	-0.257640260250921	0.300577810446592	0.697311691851564
Merged-chr12-16831214-2	chr12	16830715	16831715	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	20250.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	2.59223239494175	2.48724824409282	2.71253454335994	2.4873452295329	2.63823093721885	2.72508794540492	0.125932969474532	0.870681903979041	1
Merged-chr12-73358806-4	chr12	73358288	73359288	+	853.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50775.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	3.48642228494835	3.14715364888014	3.28936199025432	3.86793336137471	3.74401561866862	3.75744427253395	1.73016716765134	0.00462644776215067	0.0580367051700638
Merged-chr7-126745417-2	chr7	126744917	126745917	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14209.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.3118789782141	4.29223126681511	4.31936809957961	4.3678326221984	4.64496353230599	4.71293191312216	0.697073338851865	0.113516458717507	0.450160309091308
Merged-chr4-117132930-2	chr4	117132430	117133430	+	966.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_013807, exon 4 of 15)	exon (NM_013807, exon 4 of 15)	1033.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	4.5742706635547	4.46222924464842	4.09738192164681	4.5722325649788	4.10916975706443	4.16891393774724	-0.260757110208589	0.601093001616094	0.881863080585231
Merged-chr11-77381771-3	chr11	77381278	77382278	+	898.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	33498.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.35550149780108	4.46747871193309	4.62069972595398	4.58352802305689	4.5827044164253	4.4822102538409	0.188158666946298	0.659086698956542	0.905229020277098
Merged-chr16-33963889-4	chr16	33963382	33964382	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009471, exon 2 of 6)	exon (NM_009471, exon 2 of 6)	3156.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.04779221300512	4.76673800520292	4.4838365237132	4.53743081081894	4.5432755855257	4.36455271443127	-0.729624945241469	0.100641822770196	0.423170146377512
Merged-chr3-121890782-4	chr3	121890278	121891278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62451.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	4.5132955817399	4.58000193451784	4.54416648241538	4.98421332870943	4.81044367725815	4.88785659479944	0.808426399557366	0.0434630161841119	0.261968174621339
Merged-chr19-4301007-2	chr19	4300507	4301507	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5215.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.65959718396657	5.67171976912404	6.2842481192053	6.01570339483738	6.01007870435	6.04677564586181	0.231643801989788	0.49229964956542	0.83104217378051
Merged-chr9-60687587-1	chr9	60687087	60688087	+	567.0	f0_balb.idr	promoter-TSS (NM_001146047)	promoter-TSS (NM_001146047)	-53.0	NM_001146047	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	4.77251289896291	4.59030814949403	4.94837774592678	4.55602312110616	4.55716562729032	4.80545837794554	-0.315942591072798	0.450084199541755	0.808117861931044
Merged-chr11-8609346-3	chr11	8608868	8609868	+	749.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	55167.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.98224464226796	8.16556755392812	7.62571557888038	7.58281882888406	7.69170068007448	7.32793164222305	-0.576486928944864	0.0257912998384544	0.190417216284609
Merged-chr17-21515386-2	chr17	21514849	21515849	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20190.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	2.39767173408379	2.57807301525778	2.76837873006961	2.67295654374099	2.46886610276281	2.72199177748491	0.205396007180395	0.797318132084279	1
Merged-chr9-65553349-1	chr9	65552849	65553849	+	659.0	f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	26738.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.26903853568575	6.03278849902357	6.17275036302998	6.13885664733347	6.02683027809802	5.83633568837044	-0.252311156547268	0.395467048634334	0.772842311340033
Merged-chr10-93487930-2	chr10	93487430	93488430	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-838.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	5.2736936048102	5.06064099985402	4.46816187075609	4.00810302771049	4.01879734636979	3.96116202940149	-2.55940086776859	5.99546778823816e-07	3.45000611150568e-05
Merged-chr4-149782583-4	chr4	149782101	149783101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8334.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.55873331798262	7.0167749173659	7.33765329340447	7.65675878281627	7.62818210774863	7.27961768271552	0.314450791769124	0.245575441769547	0.642645689440908
Merged-chr5-141018016-2	chr5	141017516	141018516	+	957.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17420.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	4.98558964789398	5.10456931568137	5.38685598798013	5.54493197767383	5.14819270194523	5.36143100803796	0.399914021641468	0.284563184574234	0.682302206208479
Merged-chr6-84752957-4	chr6	84752450	84753450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-159042.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.46070384237655	6.61384501182058	6.59494128813726	6.45114457281777	6.44356057635331	6.57031890722511	-0.11576128623528	0.659120955735521	0.905229020277098
Merged-chr3-137951006-2	chr3	137950506	137951506	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	L2a|LINE|L2	30543.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.59759391526788	6.44702894138696	6.43271182876484	7.17228110331107	7.2863860945182	6.51259047934979	0.853474319282896	0.0051782165041379	0.0626263137901608
Merged-chr8-117224817-4	chr8	117224341	117225341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32178.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.72124476830633	5.89267592663098	5.40467735919732	5.84754170316166	5.98649322573582	5.33293579108133	0.121596716019561	0.741964535696525	0.935046573868423
Merged-chr1-180264575-2	chr1	180264075	180265075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8275.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	5.18157470818365	4.46792729631935	4.7843119967346	4.71782037810103	4.7974101524383	5.09567152548813	0.0541291291461825	0.904241636774513	0.978071913797934
Merged-chr4-10874557-4	chr4	10874053	10875053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	55.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	7.59122386947711	7.61130695914346	7.54720471257077	7.5109682413293	7.34018370888151	7.51572900944909	-0.192095527444223	0.390908354230583	0.770052731867201
Merged-chr2-167632119-4	chr2	167631622	167632622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311131)	promoter-TSS (NM_001311131)	-117.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	8.14119486414939	8.25009563614773	8.09036518171576	8.23845369770619	8.33640097599253	8.18718657485647	0.131593190124663	0.52700281796467	0.849721506593163
Merged-chr13-64266309-4	chr13	64265789	64266789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	intron (NR_045798, intron 1 of 2)	8699.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	4.23269778836634	4.2505935349311	3.99736782133288	3.8738120944464	3.9733323146975	3.9134398736843	-0.731888696638443	0.14012064947473	0.500307200544685
Merged-chr8-123235684-4	chr8	123235195	123236195	+	804.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357300, exon 1 of 2)	exon (NM_001357300, exon 1 of 2)	563.0	NM_001357301	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	5.17666160525746	5.0795606868638	4.8944374438193	4.91491864849509	4.93472785519562	4.76194141871723	-0.398103926106268	0.298249396155453	0.69500092474273
Merged-chr3-21951834-4	chr3	21951342	21952342	+	868.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-124810.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.20147330902382	3.71195436444317	3.93215011511536	4.18799691710001	4.08162334548158	4.00251411830665	0.371366950501	0.477505709585019	0.823237639056184
Merged-chr15-5115792-2	chr15	5115292	5116292	+	541.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-821.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	6.04633066254894	6.49662310272605	6.19988837062866	6.57999961037397	6.34364675320468	5.7324237998499	0.0187124441254134	0.95769249699779	0.989969855526119
Merged-chr3-138982441-3	chr3	138981916	138982916	+	665.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 4 of 13)	B4A|SINE|B4	92785.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	2.43363893940187	2.6173448189338	2.62572471587898	2.62136000008787	2.56487584488116	3.04804688106886	1.06014799033851	0.187362631029609	0.572271506774537
Merged-chr14-78732271-2	chr14	78731788	78732788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081336, intron 1 of 29)	CpG	441.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.81925516984167	3.88326576153145	3.86619242994317	3.531680155684	3.35550005249222	3.51799007771049	-1.38870035419628	0.0136045855318321	0.124369408144659
Merged-chr1-178342773-4	chr1	178342299	178343299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-4984.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	6.77693995177999	6.92708681015169	6.60644756348871	6.79056613388241	7.30553594262024	6.6832361472256	0.288805738716161	0.331224814894599	0.722596533854639
Merged-chr14-30612716-4	chr14	30612222	30613222	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-2412.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.70114732586478	4.86835665493019	5.2481409757205	5.07208875352511	5.0802081015545	4.75713751936523	0.0841484462001249	0.838660661358226	0.96255643337768
Merged-chr6-121226296-4	chr6	121225800	121226800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017379)	TTS (NM_017379)	15566.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	6.07071564745074	6.24962227050377	6.23414170285675	6.61931771189105	6.77634380313772	6.81003349285704	0.893262070615347	0.00089235005436946	0.0164964815205452
Merged-chr18-44780993-4	chr18	44780479	44781479	+	902.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	31203.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	2.9238781749623	2.81197821224287	2.80467752693647	2.90468628815389	2.84540640444064	3.38460119114493	0.980443578815959	0.182045281697319	0.564649559348511
Merged-chr1-131098488-1	chr1	131097988	131098988	+	633.0	f1_balb.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-645.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.02274002436289	3.76474532588901	4.03022136779963	4.60909667737009	4.54396729585373	3.99655143788546	1.32688452851464	0.0103704925644497	0.103070705363442
Merged-chr2-153349901-1	chr2	153349401	153350401	+	1000.0	f1_balb.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	3762.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	6.31161565658809	6.65139615231876	6.62748665439328	6.23736009325978	6.71323966513697	6.83603594010805	0.129954796147113	0.669849422562973	0.90976627360842
Merged-chr11-79623754-4	chr11	79623265	79624265	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-602.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	7.43037052285511	7.5289215940474	7.06623720933899	7.17727407461876	7.40434260899887	6.95345668190899	-0.242943903248552	0.370492521646966	0.754838358760403
Merged-chr12-24706918-2	chr12	24706437	24707437	+	585.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1317.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	2.28996219830243	2.26137892595743	2.42757054199562	2.65240600440152	2.26083350299436	2.62940059539807	1.23988868040419	0.149770049675241	1
Merged-chr12-40657236-6	chr12	40656807	40657807	+	853.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	211254.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.05145848985571	5.91540715617065	6.26851150300772	6.23200270089442	6.21883380773503	6.0335091277334	0.160498140541154	0.587225462402148	0.875769926947203
Merged-chr5-101956064-2	chr5	101955564	101956564	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 7 of 66)	ID_B1|SINE|B4	113857.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.96628188720172	3.06970200692865	3.11178251301914	3.18460019177034	2.95401358396958	3.24007322376274	0.343570259413619	0.604816420065402	0.883226183914895
Merged-chr2-181739511-4	chr2	181739019	181740019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23813.0	NM_001171615	17932.0	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	3.80559459955428	3.73375847889227	3.60236949762214	3.68641124254209	3.78056146528929	3.67352472842499	-0.0125491253127234	0.981473709697742	0.995717195177154
Merged-chr2-127133967-4	chr2	127133455	127134455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144818)	promoter-TSS (NM_144818)	-1.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	6.64447615508336	6.75441942869793	6.85908260348619	6.8505407592266	6.75730601277814	6.99833555054886	0.179601510065455	0.481510836971752	0.825121444939066
Merged-chr1-138125465-3	chr1	138124968	138125968	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	49658.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.83932693458815	4.93185907371382	4.96769365632061	4.67039787177885	5.36399462605333	4.99715979754145	0.30702561697957	0.464234254533943	0.816235256119365
Merged-chr8-125734972-2	chr8	125734472	125735472	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025636, intron 1 of 4)	intron (NM_025636, intron 1 of 4)	769.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.48210564041503	5.36661051748835	5.33155284323386	5.35123107471153	5.44860642078976	5.26613477299295	-0.0658097265252819	0.845896223455507	0.963945177091542
Merged-chr1-67380481-2	chr1	67379981	67380981	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	257454.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	2.54652922610118	2.7579013034989	2.83355752043327	2.6479514777172	2.64691860423743	2.66292762956672	-0.341870449090394	0.650923758181417	1
Merged-chr11-70785262-2	chr11	70784762	70785762	+	714.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20815.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	6.65591574628134	6.66935674285697	6.69972906197375	6.77256459727583	7.06955072169252	6.60784455770759	0.265997285229377	0.324867162700762	0.717759668463529
Merged-chr10-92722397-4	chr10	92721914	92722914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008682)	promoter-TSS (NM_008682)	4.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	6.66122557077357	7.15793142465817	7.04665377832766	6.98385470236918	6.9737468341106	6.7123578784311	-0.107480700523767	0.698386649502606	0.920332843065367
Merged-chr11-82140106-3	chr11	82139591	82140591	+	721.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24906.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	3.69280062215489	3.60039967911248	3.3861505308441	3.55582309055459	3.63823118588377	3.6284595418798	0.122741135549771	0.82999503333522	0.960157751275679
Merged-chr4-129060130-4	chr4	129059632	129060632	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	1861.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.23822358221897	6.00267730761376	5.85200329657597	6.36836945009663	6.64090597594392	6.40381389378492	0.717930571032738	0.0156706094811484	0.136908869561886
Merged-chr13-113491109-1	chr13	113490609	113491609	+	604.0	f0_c57.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11735.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.03574528020516	5.68233603595174	5.77772255105739	6.26559499150273	6.0778062215299	5.67320001062214	0.339348602110346	0.311575598523207	0.706592417811426
Merged-chr11-111066568-4	chr11	111066080	111067080	+	955.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	416.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.53832706947587	6.63301710065144	6.5379242990886	6.75621351336221	6.93712802850434	6.64912311039456	0.350782292203834	0.178075822616655	0.559118345790044
Merged-chr2-109893786-3	chr2	109893261	109894261	+	877.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011699, intron 1 of 4)	MIR|SINE|MIR	2883.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	3.24798963427969	3.08087369630592	3.09458641124056	3.22489734952781	2.91033608061928	3.28210774119	-0.00702568316941112	0.991658954427876	0.99832984416632
Merged-chr5-115510020-10	chr5	115509435	115510435	+	905.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	3259.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.68503955758471	6.81135857459867	7.01179997765776	6.94506780711466	6.82918650424423	7.30201441630759	0.300301663313989	0.274317514703413	0.671721462492876
Merged-chr1-34803917-4	chr1	34803419	34804419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	2197.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	3.19999570625824	3.03028376403977	3.24388221751759	3.16366101738153	2.82716137121031	3.20382842437143	-0.389391759674224	0.570530828041826	0.869220609141201
Merged-chr11-115639951-2	chr11	115639451	115640451	+	855.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11656.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.11506269520856	5.82058451576855	5.62038008007209	6.17151666871671	6.31563450753601	5.98003891744752	0.502091112118834	0.118509869129021	0.459921210483695
Merged-chr13-22035140-4	chr13	22034629	22035629	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	514.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	5.07680253571075	5.1180979498347	5.16934580109601	5.28067600729283	5.25971114999571	5.26563576998555	0.306226250269341	0.379045647294005	0.761587671022133
Merged-chr5-92127450-4	chr5	92126941	92127941	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10284.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.76138201703011	4.70618362686853	4.76358230649649	4.34664994187346	4.25849855915882	4.55803974135409	-0.894238458763236	0.0357630130232336	0.232435134274611
Merged-chr8-25089261-2	chr8	25088761	25089761	+	723.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	12550.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.06355537967202	4.80460060328783	4.94508781325472	5.15011764218701	4.89661815722136	5.04561241511142	0.191505301264282	0.616444310107745	0.888361387544731
Merged-chr10-81349971-2	chr10	81349471	81350471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163165, intron 2 of 9)	intron (NM_001163165, intron 2 of 9)	455.0	NM_001163165	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	6.19025426963482	5.98357367347158	6.12314258336893	6.27413209037955	5.99435972379422	6.07409262511776	0.0298602379720594	0.919084915386518	0.981911787266722
Merged-chr8-26532645-2	chr8	26532145	26533145	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	291778.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.6802996034943	2.3693076667336	2.64137535431886	2.6665704576913	2.49446454807607	2.71510004699095	0.315205242740577	0.693832294196169	1
Merged-chr11-100737354-4	chr11	100736867	100737867	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	848.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	6.45912627990961	6.57789884429166	6.64953571144862	6.9992778216065	7.06893263980713	6.94893808824182	0.70199203254078	0.00495072488279248	0.060816069154346
Merged-chr15-97821561-4	chr15	97821088	97822088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-6725.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	6.55858283797443	6.23307102029174	5.57029031458768	5.77835708024749	5.67044987684184	4.90026020662804	-1.21513587467159	0.138187463599967	0.496910928502821
Merged-chr10-41810068-4	chr10	41809586	41810586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-218.0	NM_026643	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	7.75060007354015	8.10437390852915	8.05224157367302	7.72715991991634	7.88958598468271	7.7684781881832	-0.254086011914386	0.271266312955976	0.668520948407761
Merged-chr2-129601228-5	chr2	129600644	129601644	+	894.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	5682.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.59435869619996	5.68051207700778	6.08747805701817	5.75176302372542	5.61767809377324	5.84105963936762	-0.106851981960349	0.748657135985691	0.937087780077821
Merged-chr11-100814704-4	chr11	100814200	100815200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	7870.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	5.03394838420357	5.11103472170382	5.24155788392012	5.22706956078994	5.24621461797461	5.39501890006386	0.329669132942291	0.350520702137298	0.73855122897471
Merged-chr1-45864690-4	chr1	45864184	45865184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60910.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.26496816107666	7.12830529429875	7.02919235423577	7.18526840034215	7.45816860633498	7.10056554101671	0.175765940235567	0.48491628581839	0.827217268924573
Merged-chr3-118081986-4	chr3	118081512	118082512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-213076.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	3.66081350885943	4.01759222662211	3.51878883396904	3.92086655986924	3.67792638552146	3.76136258237923	0.0970216832107243	0.865804492461352	0.968641478520565
Merged-chr6-128846251-4	chr6	128845741	128846741	+	699.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19926.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.19798385644898	4.09371951823476	3.96453911615972	4.0116426440026	3.99519570952871	4.58892991745195	0.348446637800047	0.504743402482967	0.837812225135205
Merged-chr4-10953027-1	chr4	10952527	10953527	+	550.0	f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	54592.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.67713186360958	4.71435669915292	5.13392446190684	4.9810622006222	4.94470679416169	5.00156746012686	0.288209133317628	0.471108383229475	0.819887339590267
Merged-chr3-89908542-4	chr3	89908050	89909050	+	828.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4646.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	5.63889355624162	5.52816843403393	5.59419991637474	5.06456733458731	5.18817722856455	5.34166053053781	-0.766246526317788	0.0243033427363525	0.183538985515195
Merged-chr10-40882992-4	chr10	40882501	40883501	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	142.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	7.52118345022725	7.95533702982908	7.56276745953905	7.84315659827695	7.96981708385874	7.4181368817498	0.105051731915846	0.698101314697453	0.920194115035571
Merged-chr4-123283795-4	chr4	123283170	123284170	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356377, exon 1 of 14)	exon (NM_001356377, exon 1 of 14)	759.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	5.64099338175892	5.74018518529603	4.7781141225257	5.80071342718031	5.46460568170812	4.65132674459111	-0.115457913849794	0.906064860117287	0.978581097072237
Merged-chr18-34502657-3	chr18	34502160	34503160	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	4163.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	4.91841474684928	5.14521507786113	5.15754923395092	5.15756799936613	5.12711259444484	5.1888441530153	0.169392480739164	0.640482656929948	0.898483031109382
Merged-chr18-52567512-4	chr18	52567011	52568011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Helitron1Na_Mam|RC|Helitron	-37644.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	6.18799495239676	6.12249296227224	6.25043530664053	6.15655234835116	6.27268203410391	5.7419230404654	-0.156243282478119	0.613872804116384	0.887317203673931
Merged-chr3-96759871-4	chr3	96759374	96760374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	32263.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	6.1061527886005	6.0554692160224	5.8961407377688	6.1671667104314	6.51285573106079	5.95828462747924	0.37387962103318	0.234157908827205	0.63036877369004
Merged-chr19-58978914-4	chr19	58978410	58979410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-35238.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	5.63689917085449	5.76184575522814	5.22985584613428	5.10215921811096	5.34965340586885	5.11697315828605	-0.722780671221103	0.0508429164243645	0.287178549355017
Merged-chr8-94184521-4	chr8	94184022	94185022	+	949.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5433.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	3.86058918774807	3.64851967217638	3.57851714943477	3.950985915388	3.75642695370796	3.76122520624913	0.387214665101427	0.477253191959186	0.823211450952012
Merged-chr11-70633008-3	chr11	70632532	70633532	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-6090.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	3.78430202699982	3.71497199052632	3.81478108675003	3.66180905143736	3.86549773633039	3.88377487777517	0.122999788024725	0.815413222933128	0.956370078970016
Merged-chr11-79251068-4	chr11	79250558	79251558	+	917.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019653, exon 2 of 9)	exon (NM_019653, exon 2 of 9)	3637.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.46361764275227	5.17639644988456	4.87524275855215	5.08205852150058	5.0862935665958	4.64604821494219	-0.51268306371012	0.225144083826631	0.620057224606834
Merged-chr5-21200223-4	chr5	21199718	21200718	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	13951.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.10930633377295	5.24784032449806	5.5668829265623	4.85516139531031	5.10962787932183	5.2993954687201	-0.443085436032383	0.251725669971437	0.649173703610206
Merged-chr11-16969276-2	chr11	16968776	16969776	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	17866.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.83457661125836	5.78050785246859	6.00882135763616	5.59648400080396	5.70909709808657	5.93648743567602	-0.223209076346594	0.478761609869866	0.823891137932924
Merged-chr16-44757913-4	chr16	44757415	44758415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7821.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	7.16904276466052	7.22201122791522	6.78100758440784	6.871541495087	7.20322689537539	6.74158387530213	-0.175712691624108	0.533666942378762	0.85253162296083
Merged-chr2-155538422-1	chr2	155537922	155538922	+	589.333313	f0_c57.idr	intron (NM_019811, intron 2 of 17)	(TG)n|Simple_repeat|Simple_repeat	18508.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	3.44519129621767	3.48456187400735	3.82403190588664	5.26103912184706	5.09940318817093	4.80615465509348	4.99812450804675	6.32979207193319e-13	1.2600223414388e-10
Merged-chr16-32189285-4	chr16	32188779	32189779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	9479.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	6.63377339244604	6.62617372907687	6.78927166181122	6.86913108883989	6.65215816773942	6.87635320050863	0.184709432938657	0.47381816832885	0.821131043651886
Merged-chr15-77840690-4	chr15	77840199	77841199	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	U6|snRNA|snRNA	1476.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.98398661123844	7.24807379780405	7.01333227511539	7.34043790060755	7.51149592182437	7.72616588646044	0.65267356970239	0.00960821627242134	0.0978197063007017
Merged-chr16-90045789-3	chr16	90045289	90046289	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71090.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.44283488183462	3.51798765095057	3.4990789972337	3.2766677182555	3.1312152141372	3.3514080742697	-0.948434847777997	0.119238861512779	0.461685769602386
Merged-chr2-5691982-4	chr2	5691508	5692508	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	-15962.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.30006663146704	5.42413510523244	5.42207957371353	5.3317648377142	5.41229385302531	5.36468975964954	-0.0184113175311369	0.956166128325873	0.989807313282509
Merged-chr11-44439344-2	chr11	44438852	44439852	+	774.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	31196.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	3.76466730009538	3.79255617683458	3.86943422327364	4.74725231476914	4.46978969584056	4.38563407399679	2.12223583082982	1.89471672806329e-05	0.000697282571909289
Merged-chr4-108347239-4	chr4	108346731	108347731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19079.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	5.78258871886091	5.8104528441153	5.58816961824294	5.92917179730608	6.21776219901886	5.56093254347011	0.373138226697587	0.276028622208231	0.673393624422867
Merged-chr14-55685961-4	chr14	55685464	55686464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4147.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	5.86795639596813	5.69289146063562	5.32701513404263	6.02700150209713	6.21925338876525	5.76430444855194	0.647092889318639	0.061623671654653	0.322096703023892
Merged-chr11-21569332-7	chr11	21568851	21569851	+	967.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	2583.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	7.07777317701067	7.28153941883846	7.06603391722323	7.70992774188531	7.95174056953617	7.61905863471058	0.915149498048123	0.000155169761323009	0.00408716856605412
Merged-chr2-45083229-2	chr2	45082729	45083729	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	27048.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.74683018109217	4.68781578582959	5.06165209382277	5.03812758048974	4.75549604312209	5.06001050454166	0.265500705787752	0.511278052478246	0.841331921585713
Merged-chr19-37209148-4	chr19	37208665	37209665	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027314, intron 1 of 5)	intron (NM_027314, intron 1 of 5)	1620.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	6.24646404738703	6.15086026715049	5.88978429685917	6.90092102240421	7.09387644621093	6.49283852442906	1.20518681264329	8.28368768584039e-05	0.00242273843572375
Merged-chr11-53520754-4	chr11	53520253	53521253	+	850.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	565.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	6.43400257817828	6.37024682312124	6.27849678261906	6.05457493580203	6.05792009947852	5.65764579684173	-0.700733533494909	0.0203391693868311	0.163278495546497
Merged-chr17-87299172-4	chr17	87298676	87299676	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	16290.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.5472028033372	3.66280009645779	3.61168300741133	3.29889472295491	3.51473191977613	3.46661510928548	-0.640750186213579	0.270660779448514	0.667629387731657
Merged-chr11-114884898-4	chr11	114884412	114885412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5129.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.73205649025329	7.48201098099085	7.46479664995159	7.2219731426378	7.27846526784671	7.32888595147801	-0.432211806284635	0.0648082768798298	0.331850283237962
Merged-chr15-33083659-3	chr15	33083167	33084167	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	538.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	6.95882489685664	7.32004592146986	6.85108677217545	6.77967680617767	7.19115232946143	6.7850975373707	-0.187742085512672	0.512560263469178	0.842035822364134
Merged-chr12-83694235-2	chr12	83693748	83694748	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	B4A|SINE|B4	5685.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	2.95052338267802	2.74813754543719	3.09278132299757	3.08304446090099	2.60750660964278	2.67253609222113	-0.625829148524376	0.42588282172681	0.793463399937346
Merged-chr1-149860110-2	chr1	149859610	149860610	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 13 of 17)	(TG)n|Simple_repeat|Simple_repeat	62329.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.76437232189824	2.43450763951382	2.63114505563522	2.69201706426499	2.74178893623882	3.17054213040795	1.36799614214904	0.0927526317373134	0.405701265916025
Merged-chr7-135605577-2	chr7	135605077	135606077	+	586.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-251.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	4.02592550346299	4.22556014467616	4.57437208681302	4.02705526201208	4.08436485208521	4.05330349165302	-0.637647225498862	0.202655452035218	0.59252027125208
Merged-chr7-30909037-4	chr7	30908543	30909543	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001346085, exon 5 of 11)	exon (NM_001346085, exon 5 of 11)	5278.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	4.8503443592549	4.7868275983131	5.0487400445926	5.14955010466803	4.98189165251139	5.07924641505136	0.386739425603658	0.305373395434555	0.70154336825049
Merged-chr11-20332795-4	chr11	20332313	20333313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-100.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	5.87326086919933	5.68794016701584	6.07000978800032	5.79265064422161	5.91536920299405	5.78253882876458	-0.0704017643609589	0.822179280459642	0.958041123079214
Merged-chr9-32507713-4	chr9	32507200	32508200	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33752.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.3458179362156	6.33384614819839	6.22202450441307	6.19043400259748	6.1085436334721	6.22026970238126	-0.22886820082117	0.40625399398609	0.780621211487071
Merged-chr3-22152925-4	chr3	22152452	22153452	+	939.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 2 of 15)	intron (NM_030732, intron 2 of 15)	76300.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.73549333668615	2.905656392045	2.99039820178819	2.75625755795763	3.02176927771235	2.82380789182299	-0.00209742182397014	0.997696041546073	0.999535504317229
Merged-chr12-51848073-4	chr12	51847517	51848517	+	876.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18481.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.78014656134839	5.2383627135834	4.71073069825819	4.17618075118232	3.94010510365436	4.34941593970612	-2.00041242772192	2.71771453993575e-05	0.000947760232351105
Merged-chr11-5741195-4	chr11	5740702	5741702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361590)	promoter-TSS (NM_001361590)	-26.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	7.36580670848333	7.56500681941513	7.35768943082034	7.92327332038276	7.67698282034383	7.72205737776857	0.495759950635309	0.0326736589646544	0.220049357760499
Merged-chr10-96637181-2	chr10	96636681	96637681	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20180.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.16545185150524	3.02381859158835	3.06675669546632	3.09046759712785	3.27886784761524	3.4716942960607	0.833034833615012	0.20291503408319	0.592772302593993
Merged-chr1-172126721-4	chr1	172126212	172127212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159525)	promoter-TSS (NM_001159525)	-43.0	NM_001356513	19298.0	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	5.34292901933382	5.38187385825942	5.43878801264782	5.49949180161288	5.46376023222987	5.3173745713517	0.0964030577376862	0.772401569769845	0.943716660313239
Merged-chr2-166684237-4	chr2	166683701	166684701	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	29631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.66306949318342	6.36400584332521	6.07009482309997	6.81804544125298	6.84832122090116	6.27154277034808	0.451817136387851	0.163534611686193	0.537543966547553
Merged-chr17-56258895-2	chr17	56258395	56259395	+	652.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010192, exon 1 of 1)	3' UTR (NM_010192, exon 1 of 1)	2102.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	2.36931998737832	2.30118211144228	2.66824008548995	2.42978551361026	2.38344195143354	2.36797511538549	-0.347050076174254	0.677676905675524	1
Merged-chr15-31602195-4	chr15	31601679	31602679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	63.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	7.46257125139061	7.51942100872849	7.39048292312979	7.64433296561104	7.43905901801858	7.18888039951585	-0.0251800480634337	0.918043681788626	0.981747877135909
Merged-chr16-57576268-2	chr16	57575768	57576768	+	556.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	L1_Mur2|LINE|L1	27026.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.00602724754858	3.51961938940292	4.35971296810161	3.91162363288685	3.32938863165661	3.86846106519337	-0.837644789328272	0.194953514172725	0.582675718652448
Merged-chr3-138521082-4	chr3	138520590	138521590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5101.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	6.37636296331805	6.39067685002763	6.06045621781348	6.42763666515528	6.28691039630168	6.35602381743024	0.0991811745246022	0.726349443340159	0.929802379677973
Merged-chr1-183671446-4	chr1	183670938	183671938	+	947.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77539.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.79950981583859	3.65372923475142	3.78497041764283	4.2120932526341	3.87777402996182	4.0070616647352	0.908757782152616	0.0821598302124334	0.379123019025808
Merged-chr9-106306908-4	chr9	106306412	106307412	+	896.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 8 of 10)	intron (NM_027354, intron 8 of 10)	25851.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	3.9327774611185	3.98074474992912	3.82340586244804	4.14968894496749	4.36436348638335	4.3293580783819	1.04923609719074	0.0317199288751921	0.216003915365168
Merged-chr8-122375780-2	chr8	122375280	122376280	+	866.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-829.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	3.89279828976081	4.18693307964568	3.86470191914915	4.33322243940931	4.0301046031365	4.13823941396086	0.498151948113938	0.326997099312521	0.719295070706011
Merged-chr10-82812019-4	chr10	82811519	82812519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038042)	promoter-TSS (NR_038042)	-104.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	3.64756662888306	3.65072596440298	3.5887694161284	3.76074523480197	3.5464339272691	3.54909157756593	-0.0295072293679926	0.95760710401586	0.98996830630481
Merged-chr1-131282513-2	chr1	131282013	131283013	+	781.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.03322924894455	2.95191364434053	3.12652283318887	2.82967382810956	2.83868468765408	3.02754031177774	-0.665658097013581	0.333771618625908	0.724610149725429
Merged-chr16-31025120-3	chr16	31024621	31025621	+	750.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56311.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.8212142035904	3.76959987663546	3.91829964252041	3.62324442201428	3.52842208531117	3.74223052784453	-0.697428934320384	0.196457693123385	0.584254323936187
Merged-chr1-191756742-4	chr1	191756237	191757237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 4 of 7)	intron (NM_001134829, intron 4 of 7)	38342.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	4.65263208493874	4.33646108428106	4.54532429426324	4.6643234952996	4.23334811738621	4.69021370471036	0.0480733183071453	0.916605202426082	0.981328946004496
Merged-chr12-87406579-1	chr12	87406079	87407079	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-18224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	5.28134207564854	5.18679587784519	5.72864427443691	5.3742491211673	5.56903389320551	5.64100445945583	0.23998789651834	0.507859600243146	0.839513705470194
Merged-chr10-80939879-4	chr10	80939383	80940383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9792.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	5.62720702168026	5.53611448654998	5.27275923311395	5.30592261488387	5.35993952782438	4.84293145265474	-0.56897961793532	0.13686061251171	0.494287853026363
Merged-chr8-117068745-2	chr8	117068245	117069245	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 5 of 42)	intron (NM_029686, intron 5 of 42)	13704.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	2.55503447136285	2.20873596227981	2.23426996805535	2.66332117914723	2.40036583698182	2.58253997121726	1.26445171417048	0.163667350320108	1
Merged-chr1-88239677-3	chr1	88239180	88240180	+	822.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 15 of 41)	intron (NM_001281466, intron 15 of 41)	12660.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.37919085260512	3.75300920763051	4.06518729641193	3.58028922038317	3.41581766986726	4.25238125902243	0.127491872751563	0.847733904150406	0.964318271116593
Merged-chr11-106615070-2	chr11	106614570	106615570	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2140.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.82741354436118	5.20347820938141	5.23256673279123	5.61381809680234	5.48668252423083	5.63279603446119	0.208640762598986	0.578946107685919	0.872437129840066
Merged-chr5-105011810-4	chr5	105011303	105012303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29086.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	6.08531432007439	6.19909469757664	6.21550001876878	6.06018437237021	5.91810169402538	6.04187745311502	-0.277848928358315	0.331608786082472	0.72297130356206
Merged-chr15-97422357-4	chr15	97421846	97422846	+	953.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175059.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.00719998747829	4.0801869983023	3.88068576019974	3.7997641677504	3.54794773768747	3.95022085355687	-0.72927159161943	0.174190827968505	0.55334916165878
Merged-chr7-118800277-4	chr7	118799796	118800796	+	784.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55317.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.66496916735414	4.48115576960029	4.5154348338724	4.78567206151266	4.43928476100527	4.74313636085775	0.237972444924769	0.579113558634309	0.872437416842052
Merged-chr1-88238853-5	chr1	88238344	88239344	+	789.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 14 of 41)	intron (NM_001281466, intron 14 of 41)	11824.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.41234588025856	3.60924203327528	3.67291349383355	3.2033473669312	3.43472385732856	3.8361172673101	-0.197115241722611	0.75471684010128	0.939073511009908
Merged-chr17-34747669-2	chr17	34747163	34748163	+	912.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3766.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	4.22953292875144	4.19586897079918	4.48045961943426	4.552713012879	4.51582472603893	4.54687701341753	0.618282944168971	0.159521703941114	0.531790141888311
Merged-chr11-9338321-3	chr11	9337807	9338807	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 27 of 61)	L5|LINE|RTE-X	146365.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.91602051622807	3.96273591074865	3.90362919178984	3.84760240738536	3.82957446731481	3.59613859674084	-0.502256989995783	0.34174236027646	0.730980941894702
Merged-chr8-106137714-2	chr8	106137214	106138214	+	593.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176838)	promoter-TSS (NM_176838)	-740.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	3.37221956591849	3.13698532627221	3.21137676650013	3.14555498559078	3.07153184138276	2.91330531235317	-0.843750798421028	0.20994061216165	0.601865659082314
Merged-chr10-14034217-1	chr10	14033717	14034717	+	598.0	f0_balb.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	67838.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.5527872829809	3.37934431195456	3.82292410930801	3.84460416948302	3.48615543296981	3.53174213429834	0.14075224382027	0.813267631187061	0.955940138311315
Merged-chr8-61224059-4	chr8	61223570	61224570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021506)	promoter-TSS (NM_021506)	-101.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	4.14108125449072	3.95201240454739	4.26914890461983	3.66376197260424	3.65538870303109	4.21111963341409	-0.792354589686989	0.152878057999027	0.521355567452332
Merged-chr7-102540676-1	chr7	102540176	102541176	+	585.0	f0_balb.idr	Intergenic	Intergenic	5927.0	NM_147079	259083.0	Mm.377828	NM_147079	ENSMUSG00000073979	Olfr547	MOR31-4	olfactory receptor 547	protein-coding	3.44685440466743	3.53573378332568	3.64042390711246	3.08402553576328	2.99029457216152	3.10509861329173	-2.10188449179351	0.00151662759483635	0.0249053777207703
Merged-chr10-80387212-2	chr10	80386712	80387712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 1 of 2)	exon (NM_198615, exon 1 of 2)	439.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	4.56086593637819	3.78400852925511	4.04397635122316	4.6030067228098	3.70395972632803	3.95821677981449	-0.0618647263773084	0.920873557216117	0.982463724790289
Merged-chr7-80056933-2	chr7	80056433	80057433	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18324.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.88166209508076	6.11752921305284	6.37535053400261	5.76220766338227	5.67159416136176	6.03611025093818	-0.549440123966879	0.0914374078080786	0.402514222246038
Merged-chr4-155418918-2	chr4	155418418	155419418	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166029, exon 4 of 5)	exon (NM_001166029, exon 4 of 5)	2786.0	NR_102287	641454.0	Mm.150322	NR_102283	ENSMUSG00000084803	5830444B04Rik	-	RIKEN cDNA 5830444B04 gene	ncRNA	2.7388424453484	2.79734289282393	2.81840090242723	2.89648391047341	3.06889326506376	2.95299300853503	0.964261846092569	0.170110564476741	0.547374602613428
Merged-chr13-49198051-2	chr13	49197551	49198551	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10504.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.75772731871143	7.96719028832531	7.62320847677686	7.75920460604841	7.85506573197556	7.70772363219842	-0.0261812992905892	0.909009768809412	0.979384717565381
Merged-chr8-92875955-4	chr8	92875452	92876452	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 6 of 12)	intron (NM_001357375, intron 6 of 12)	20619.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	4.561192265396	4.6093283701622	4.8923581159385	5.5799948203704	5.5333580051983	5.39420842863513	1.75351971851793	2.62330955448529e-06	0.000126319642019451
Merged-chr9-21328247-4	chr9	21327753	21328753	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	7534.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	4.65298766378991	4.52284582817868	4.66857540890966	4.61946060227333	4.84428595577904	4.98739572311658	0.484930734863283	0.237263017236619	0.633672456067794
Merged-chr13-110602049-4	chr13	110601552	110602552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	207008.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.31045354774403	7.33082207677536	6.7425237853675	7.01912038677399	7.13717030685594	6.6071250664808	-0.324339254235799	0.28189166450623	0.679908771156903
Merged-chr5-76522640-4	chr5	76522120	76523120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-6687.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	5.28074228237842	5.43608208048336	5.76024246614648	5.5213647004901	5.63058550712276	5.53554146108832	0.13628629842207	0.691640624378306	0.918398695262194
Merged-chr8-126918482-2	chr8	126917982	126918982	+	737.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	27439.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	3.46992284657625	3.19886427328616	3.14325116725478	2.79595067094075	2.81768090947116	2.90768233744895	-2.17316239904474	0.00300562272626735	0.0421882347852992
Merged-chr17-46171944-2	chr17	46171439	46172439	+	725.208374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030715)	TTS (NM_030715)	9875.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	3.02110455946545	2.97344733835757	3.01360021771757	3.0399426758756	3.10087361179927	3.56862863274526	1.06494727807896	0.121141106018082	0.465498713842827
Merged-chr2-32588387-2	chr2	32587887	32588887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	1309.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	7.12760687149838	7.03311362925894	6.94152867834011	7.52055716119174	7.67953602244644	6.8127210869116	0.541192079765195	0.0728290248658759	0.354586050944861
Merged-chr12-25093453-5	chr12	25092949	25093949	+	972.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010496)	TTS (NM_010496)	2643.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	6.63124936829334	6.47922323308457	5.62373267608593	5.87275847608293	6.03346915162196	5.83467533839256	-0.687690854431959	0.0641152735926834	0.329885214265397
Merged-chr18-39517359-4	chr18	39516847	39517847	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30102.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.19605287035818	3.96906812449847	3.92102525511222	4.25145359425885	3.97688681851111	4.13874945821544	0.242882591351046	0.62571703866314	0.89258809108662
Merged-chr19-37613145-4	chr19	37612656	37613656	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 18 of 21)	intron (NM_175353, intron 18 of 21)	62738.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.5308829453643	5.60122428022694	5.58726273258446	5.42779379106569	5.3190448043328	5.72682578277262	-0.160035288045494	0.634894736024115	0.89636184389676
Merged-chr14-33217527-2	chr14	33217027	33218027	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	704.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	3.94553548523057	4.12906819824851	4.3397956359897	3.66714825949464	3.61899337336764	3.82484331375982	-1.39124785464301	0.00918870524016719	0.0949545188305802
Merged-chr19-46519391-2	chr19	46518891	46519891	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17743.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.26437952567509	3.26497746980903	3.35111589212036	3.50275574111409	3.26738638879215	3.24984843943758	0.216269442102721	0.724049730821117	0.929178878081464
Merged-chr3-146655431-4	chr3	146654931	146655931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	5.91553795729777	5.93502235254839	5.72239147422906	5.91905443135147	5.67607323852581	5.98186577543405	-0.0224719600326193	0.942570282935692	0.987202156853573
Merged-chr15-76900659-2	chr15	76900159	76901159	+	579.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_025536, exon 2 of 2)	exon (NM_025536, exon 2 of 2)	718.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	4.40260975055719	4.15577087952974	5.00307472821546	4.35288539425471	4.34138721605993	4.91134971694589	-0.0162971458329512	0.975252927301084	0.994454548709104
Merged-chr8-22708060-4	chr8	22707577	22708577	+	881.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	3.88040763697797	4.27330693619398	4.30643062691565	4.02037284029066	4.00891784207333	4.10853724728168	-0.343194673318111	0.493323925666733	0.831208279358962
Merged-chr14-56777625-4	chr14	56777128	56778128	+	897.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025682, intron 1 of 8)	CpG	690.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	6.69036917245303	6.89580026299802	6.62258795147856	6.39974361588417	6.63852368606786	6.7916626068966	-0.207664299094215	0.448040476316451	0.806987377046511
Merged-chr2-11599636-4	chr2	11599136	11600136	+	803.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3563.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	5.97912934155179	6.18070371311818	6.15420347411874	6.5068114332911	6.56325337099349	6.25726822805046	0.584212166528376	0.0398855352019412	0.248530976667493
Merged-chr5-28076136-1	chr5	28075636	28076636	+	607.0	f0_balb.idr	intron (NM_153526, intron 4 of 4)	intron (NM_153526, intron 4 of 4)	4724.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	2.60520080457952	2.43938678937375	2.59147764212875	2.2645036878187	2.42177129696767	2.47700581495081	-0.971357562284307	0.242999142316246	1
Merged-chr4-34882399-1	chr4	34881899	34882899	+	1000.0	f0_balb.idr	intron (NM_013889, intron 1 of 7)	CpG	549.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	6.91292684356359	6.31894541483487	6.55467812153855	6.88314919054522	6.12603913976915	6.22539890216367	-0.255633203060709	0.465806460224046	0.817213965217222
Merged-chr7-101296827-4	chr7	101296357	101297357	+	921.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111111, exon 5 of 18)	exon (NM_001111111, exon 5 of 18)	5231.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	3.75511691015063	3.52040027777009	3.34034582447531	3.53333120963139	3.84157382322679	3.64568115422603	0.438913550835334	0.463075580510589	0.815638807458037
Merged-chr16-8835466-2	chr16	8834966	8835966	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	RSINE1|SINE|B4	5366.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.77605497240711	3.57727289683467	3.88367798159112	4.05081552785404	3.69071171983853	3.90400639545775	0.449868715022832	0.408338672586562	0.781982251625038
Merged-chr12-70470653-2	chr12	70470153	70471153	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	17499.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	4.55776973754295	4.05537635379772	4.39426569286893	4.62652681882811	4.500537342804	4.37298444416733	0.392662167187434	0.402949760942408	0.778365878954155
Merged-chr11-82747202-4	chr11	82746708	82747708	+	892.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 5 of 13)	intron (NM_009839, intron 5 of 13)	17113.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	7.11974753618096	7.54296495650217	7.36530594268561	7.20743856571274	7.2740772605904	7.32433466424115	-0.130197368445913	0.600484122228413	0.881684892224841
Merged-chr13-12395221-4	chr13	12394717	12395717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-158.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	6.85427456634807	7.05246262266541	7.02502343622404	7.08252344867974	7.22069694519635	6.77680985005015	0.109916758207125	0.674852726612483	0.911865018776908
Merged-chr16-11343507-4	chr16	11342996	11343996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	MIR3|SINE|MIR	20592.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	7.65950087574231	7.74498786690828	7.42269726861576	7.32039316538454	7.5763511205141	7.11907677054707	-0.378042716258626	0.139317926017663	0.498746546834648
Merged-chr4-142016927-2	chr4	142016427	142017427	+	643.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	3.59600936016478	3.3286191701514	3.39490274928129	3.41464565507037	3.35679337595822	3.57440226218255	-0.0044906636909597	0.993989708651826	0.998875565240772
Merged-chr6-126939003-2	chr6	126938503	126939503	+	562.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	584.0	NM_001347455	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	4.02614297669373	3.72219493165408	3.92555339725544	4.39349986270701	4.44673506912608	3.99743500784979	1.16545427527097	0.0234657143212199	0.179477448041186
Merged-chr11-70648058-5	chr11	70647522	70648522	+	849.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024211)	promoter-TSS (NM_024211)	735.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	5.59545406451872	5.37519253845455	5.82981096132475	5.83278472001166	6.08979177981433	5.86705932411517	0.615999521329369	0.0607042852506971	0.319123209953248
Merged-chr2-25055317-2	chr2	25054817	25055817	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039386, intron 2 of 15)	intron (NM_001039386, intron 2 of 15)	938.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	2.88265102213484	2.62498896190731	2.56566239228042	2.82605480527288	2.63707790347703	2.89473805480256	0.439409879508893	0.569415504511237	0.8688875602138
Merged-chr1-171389715-1	chr1	171389215	171390215	+	1000.0	f1_balb.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	755.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	8.43968848095635	8.53161412522886	8.48967268932698	8.5238856425894	8.68672298449671	8.39274203979126	0.0798898825035073	0.701861329065401	0.92160130715755
Merged-chr14-70576971-4	chr14	70576475	70577475	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-849.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	7.27770364370489	7.10951690940189	6.97025044784824	6.98450120197305	6.63647057235913	6.56736028328352	-0.58936246416053	0.0292636033227625	0.205569092889863
Merged-chr7-101368728-7	chr7	101368149	101369149	+	850.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 2 of 33)	L1ME4b|LINE|L1	-9473.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.02700548006654	5.20302798612395	5.60267942006725	4.87414686381857	4.84262767635273	5.230224897479	-0.635860860204985	0.114712180952346	0.452186398382538
Merged-chr6-13598465-4	chr6	13597961	13598961	+	990.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	9637.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	5.55071360383777	5.52843686753252	5.43627587682375	5.83107854958429	5.66745904465267	5.77626110348441	0.457571051257531	0.148873704101157	0.51483658912136
Merged-chr4-128698559-5	chr4	128697993	128698993	+	795.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	9755.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.25270665962908	4.94907369169926	5.09022814237132	5.14692166492357	4.70247470181608	5.18708962403102	-0.179120950643096	0.654818070492089	0.903959451132495
Merged-chr5-28036063-2	chr5	28035563	28036563	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35349.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	4.76714603665401	4.85133290510061	5.0555188855694	4.41189115470818	4.06453726492936	4.27273069868774	-1.59665827159014	0.000364784376293523	0.00817323990943627
Merged-chr11-103372764-2	chr11	103372207	103373207	+	857.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 8 of 11)	intron (NM_183034, intron 8 of 11)	-9015.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.85716757253667	3.99033718850062	4.09172364730766	4.15749387169005	3.83724693079111	3.91981621003815	-0.00362560435729251	0.994334256240981	0.998918571480046
Merged-chr5-148477745-4	chr5	148477274	148478274	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	73899.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.20165184472745	3.94022244176808	3.83919554338864	3.82102379766579	3.96034880413785	4.01073316252004	-0.23352678890471	0.650544496648067	0.902626421162121
Merged-chr5-151333290-4	chr5	151332799	151333799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35376.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	4.82445235437844	5.22814052191773	5.00814125550323	5.32000619408333	5.16908733215034	5.39579126114006	0.527776884808532	0.160970190392757	0.533655406039239
Merged-chr12-34591908-4	chr12	34591412	34592412	+	769.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	RCHARR1|DNA|hAT-Charlie	-63023.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.00103373148881	3.14645548078211	3.03972592923809	3.12647218858269	3.65913304240794	3.40827102703324	1.46821651346723	0.030171493190245	0.209663404490889
Merged-chr4-47320090-4	chr4	47319573	47320573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-33149.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.39545350477636	6.27704959232089	6.54006221282527	6.27670119191974	6.26978554580507	6.56596340332132	-0.0538686495397703	0.848555214645534	0.964356989789491
Merged-chr12-102389587-2	chr12	102389087	102390087	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 9 of 9)	intron (NM_177620, intron 9 of 9)	50226.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.64895604236566	2.14155275379607	2.28001386360759	2.51305377551247	2.31741377061211	2.55640491634817	0.5252423632043	0.571401644893007	1
Merged-chr11-103384442-1	chr11	103383942	103384942	+	554.0	f1_balb.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-20750.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.71291795433179	6.71238603537199	6.89990054315106	6.57690678078116	6.93531088122732	6.58652113650832	-0.0795145649113942	0.769800361455684	0.943253986717194
Merged-chr6-29469207-2	chr6	29468707	29469707	+	681.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	1424.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	5.60655624950771	5.59252297920781	5.39315045568348	5.46643110565842	5.3121220258123	5.57334819014558	-0.18446618828577	0.581635272968334	0.873381838073181
Merged-chr7-80369182-4	chr7	80368646	80369646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172903, intron 3 of 23)	MER117|DNA|hAT-Charlie	2229.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	6.38591413220228	6.230025678626	5.99006978990204	5.97464237925331	5.90614486298365	5.85252318705014	-0.528205454583591	0.0776937668078267	0.36787930054889
Merged-chr7-122971040-2	chr7	122970540	122971540	+	780.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045614)	promoter-TSS (NR_045614)	476.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	6.93392386660297	7.18891505293718	6.65119119154326	6.91656511651946	6.92965207370088	6.62263010315255	-0.178558561512436	0.525631235430611	0.849071708183764
Merged-chr17-70992936-4	chr17	70992428	70993428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357820)	TTS (NM_001357820)	-2412.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.49180608312235	7.65931296582047	7.48718932036007	7.24286314063587	7.33618451476363	6.99333629623799	-0.505470543477955	0.0371648319487024	0.237896094837113
Merged-chr10-126986847-4	chr10	126986341	126987341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	8124.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	5.03363026415421	5.06874408202151	5.39032296528105	4.99684671523394	5.37279561680095	5.39574272992037	0.212640887387001	0.574105418017419	0.870523174873875
Merged-chr5-8423511-3	chr5	8422998	8423998	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190717)	promoter-TSS (NM_001190717)	660.0	NM_178766	319653.0	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	5.19156186408207	5.14446038199148	5.0330216447369	5.12486451313546	4.88581407473153	4.70597352451465	-0.438562229637773	0.255445347635858	0.652537847534371
Merged-chr19-47900732-4	chr19	47900267	47901267	+	956.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	18532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	3.40301426613829	3.48536299339601	3.64490268508403	3.71746317118506	3.33538108833178	3.76414585537953	0.363292447232491	0.541801146598734	0.856961807481655
Merged-chr10-39613175-4	chr10	39612727	39613727	+	976.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134000, exon 1 of 9)	5' UTR (NM_134000, exon 1 of 9)	293.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	4.68501276544014	4.78318135974766	4.41049046224801	4.72250429372528	4.44236024254265	4.43330896484029	-0.253107980812995	0.563910925365933	0.866014520598636
Merged-chr3-60437954-4	chr3	60437512	60438512	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34818.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.53946388947783	4.8958984715476	4.69360442492859	5.18402933532834	5.55776110678439	5.39195432174283	1.41362967259308	0.000343913519108506	0.00779100356601702
Merged-chr2-166701355-2	chr2	166700855	166701855	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	12477.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.87172368123773	4.44922427470696	4.47970927843967	5.20200437441708	4.74497363061577	4.84296718488686	0.732823044307723	0.0965573759526187	0.4142681490326
Merged-chr8-22701551-4	chr8	22701053	22702053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	Lx8b|LINE|L1	5030.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	5.10865260574641	5.43649723644534	5.68729324977242	5.45969212212278	5.57482236528909	5.59412172069514	0.234864714718203	0.510734278125559	0.841054838220039
Merged-chr4-151858919-2	chr4	151858419	151859419	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2849.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	3.99470970691203	4.36869115289765	4.49074035140594	4.33439989121007	3.92786227964222	4.07681735299366	-0.478257058828813	0.348570270990567	0.736437007632111
Merged-chr7-126377515-4	chr7	126377041	126378041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045537, exon 1 of 13)	non-coding (NR_045537, exon 1 of 13)	393.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	6.90744033907721	6.95276230433184	6.90139616513254	6.86885668071775	6.64612429150452	6.59842921424611	-0.325771771169128	0.198726163855256	0.587160238692855
Merged-chr3-135421249-4	chr3	135420725	135421725	+	864.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	ID_B1|SINE|B4	2208.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	7.45523457356848	7.53843010121082	7.28415021955314	7.75322607836744	8.13309273198018	7.3886108828621	0.537892311872838	0.0521221791276097	0.291746009406666
Merged-chr2-61583118-4	chr2	61582585	61583585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	L1M4|LINE|L1	4499.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	7.00839719989232	6.958987365722	7.04143447401468	6.9683727065211	7.09400120475256	7.20973683903677	0.136238667539984	0.572023206912208	0.869773807126863
Merged-chr15-73150932-2	chr15	73150432	73151432	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	34015.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	3.46282208060546	3.26263981643544	3.55032981668166	3.48514938609534	3.22558741475748	3.6200171959159	0.0745967780302598	0.903406890132101	0.977827650905621
Merged-chr5-96804520-4	chr5	96804034	96805034	+	879.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	MER21C|LTR|ERVL	11149.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	3.00747326733449	3.2586616372185	3.20970540662575	3.22318699396847	3.09320515252282	3.04462310474423	-0.168035553110185	0.797739341112622	0.951807414581074
Merged-chr1-156921770-4	chr1	156921299	156922299	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357391, intron 1 of 19)	intron (NM_001357391, intron 1 of 19)	17588.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	4.12791652542944	4.29323209349665	4.28070175545417	4.30702920794249	4.22050992324186	4.25852943338349	0.0726029800044842	0.87367464614955	0.970440430875665
Merged-chr2-166708794-3	chr2	166708316	166709316	+	908.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	5016.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.58300409452397	4.32734641745178	4.26658791271725	4.65824190122691	4.37571353789969	4.38272417143968	0.185654819026328	0.682394064865342	0.915072334923495
Merged-chr18-36230824-4	chr18	36230326	36231326	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33666.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	4.53379126133877	4.55991521352459	4.02731472824817	4.38607464796768	4.66083603541849	4.6574291829558	0.412966238080695	0.391281641525558	0.770316284913563
Merged-chr13-98835388-1	chr13	98834888	98835888	+	557.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-19939.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	3.58352120594289	3.66441076523244	4.12276129183959	3.76581400284906	3.69863582706081	4.14738382568977	0.235071065990743	0.683764861388767	0.915479407206029
Merged-chr7-144939215-2	chr7	144938715	144939715	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	710.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.57668592396123	6.39852780631298	6.53492682234058	6.71230024115933	6.93861359672545	6.32549950875153	0.308078006123849	0.292947966567624	0.690053425164737
Merged-chr5-81036842-2	chr5	81036342	81037342	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	MTD|LTR|ERVL-MaLR	15249.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.29678061358327	3.09774285300717	3.59192737066756	3.13627896032107	3.34264964579253	2.99161422335252	-0.681281174257368	0.327128001119126	0.719345672839978
Merged-chr2-79634705-3	chr2	79634191	79635191	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-734.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	6.37399039932844	6.59286952711789	6.42301563650693	6.07950320433151	6.34355670156744	6.04634576519634	-0.485668029687431	0.0918331435600209	0.403658331185537
Merged-chr4-41465027-4	chr4	41464546	41465546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	-102.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	6.13566879416588	6.26649408004492	6.31094614760923	6.28936528923767	6.44454114612474	6.12106456054851	0.110959789019789	0.697008818543874	0.919795142860633
Merged-chr17-56991059-2	chr17	56990559	56991559	+	801.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_017393, intron 2 of 5)	intron (NM_017393, intron 2 of 5)	795.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	4.86787330937908	5.08232298017201	4.99914712692247	5.08291653732139	5.03311980042558	5.02864336326036	0.132621537790933	0.720073320301168	0.928031587064128
Merged-chr13-30633267-4	chr13	30632764	30633764	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18221.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	3.49396198336039	3.26618596482537	3.5315677854326	3.43983412347589	3.48842920523486	3.65270160558098	0.34884094987947	0.5536167205274	0.862371517196081
Merged-chr16-21628440-3	chr16	21627953	21628953	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	66212.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.34577626916265	4.32515928869419	3.94321418401262	3.60284422232827	3.34735171710846	3.80526788678955	-2.10286456493029	0.000301866758882651	0.00700829499807691
Merged-chr5-105518075-2	chr5	105517575	105518575	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.94760395129443	3.68430190058023	3.6542222355737	3.51766143752353	3.53575782480148	3.50279702114417	-0.879521654513091	0.119508939082315	0.462096057511792
Merged-chr14-63138997-2	chr14	63138497	63139497	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 7 of 9)	intron (NM_007798, intron 7 of 9)	16535.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.71765257841786	3.80147934086518	4.29418216522228	3.7416923983829	3.57288415958696	3.98207887712031	-0.578536992773682	0.31295660993508	0.707583653048153
Merged-chr2-132006726-4	chr2	132006214	132007214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	23274.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	7.31205001666746	7.2369068628085	7.17882402222341	6.78614300011437	7.04057641465796	6.780607202784	-0.548494514108185	0.0272083433478313	0.196465721668581
Merged-chr11-44399095-4	chr11	44398574	44399574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-989.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.638467902479	5.23899261487803	5.52948798642844	5.26417044868919	4.99750132327006	5.53745040107503	-0.406219519920644	0.282033391911051	0.679908771156903
Merged-chr5-117358954-2	chr5	117358437	117359437	+	820.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	B3|SINE|B2	1632.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	4.47649838018134	4.07622616064325	4.11940741263168	3.94313930644714	4.3249396265178	3.93338700388494	-0.412331030922438	0.430231537771407	0.796158825510326
Merged-chr5-124480353-4	chr5	124479844	124480844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2109.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	7.9260258082611	7.85601244044544	7.4544450527974	7.93642479231477	8.26869872140708	7.48931981434395	0.256243847252909	0.376669094397445	0.759336465825071
Merged-chr19-6980527-4	chr19	6979980	6980980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360286)	promoter-TSS (NM_001360286)	-16.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	8.58748968644588	8.40067854420553	8.23227585001473	8.40620432242895	8.47425015206916	7.97655928390444	-0.149833694426448	0.540460194805761	0.85632302227606
Merged-chr2-167635752-2	chr2	167635252	167636252	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-3747.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	3.21084780406018	3.23032905203843	3.17525320807941	3.20467964841643	3.2436607934347	2.93565755368728	-0.272686017432117	0.681471181775605	0.914693263933768
Merged-chr9-40196175-4	chr9	40195673	40196673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	3857.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	6.25178647506264	6.3509380520887	5.89965515424889	6.53842559969302	6.60233881572585	6.48351550664405	0.570885207930699	0.048880976499024	0.280922097513771
Merged-chr6-112947351-4	chr6	112946837	112947837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080448)	promoter-TSS (NM_080448)	-71.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	4.86544180176098	4.81242684772543	4.96838675709485	4.7753455273173	4.6900522528628	4.96382834976745	-0.167171975716913	0.669592527614826	0.909692012644768
Merged-chr18-46921770-2	chr18	46921276	46922276	+	704.666626	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001033446)	promoter-TSS (NM_001033446)	-39.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	3.42136663690922	3.07605158178367	3.06096233552385	2.77540583313113	2.93494089349088	2.88428469808165	-1.55788371694596	0.0323215054707787	0.218491171274072
Merged-chr11-49249404-2	chr11	49248904	49249904	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110149, intron 1 of 1)	intron (NM_001110149, intron 1 of 1)	-1148.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	5.2256140855071	5.57687675480272	5.72532294510493	5.14732262989979	5.17134591680699	5.61372568509045	-0.392827862044508	0.298679389033573	0.695427199902635
Merged-chr10-69352948-4	chr10	69352446	69353446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007659)	promoter-TSS (NM_007659)	-34.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.01773007218651	3.70720558387128	3.9170572683873	4.03714893008079	3.90259990072776	3.98636092034434	0.269945996020874	0.599259692894645	0.880928581989958
Merged-chr11-29151747-4	chr11	29151265	29152265	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	ORR1D2|LTR|ERVL-MaLR	21014.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	4.97082206458518	4.88277803629076	4.67010354138291	5.21422479639919	4.82673069502548	4.97429408078734	0.341221181829671	0.394374798703217	0.77232079480565
Merged-chr14-30761429-4	chr14	30760932	30761932	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	L2a|LINE|L2	45817.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	6.26155517121901	5.88582865040562	6.03695216250376	5.41512086980032	5.32905210628026	5.74593755286825	-1.04656585451284	0.00170701944542405	0.0273464909539553
Merged-chr7-72306522-3	chr7	72306063	72307063	+	889.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024703)	promoter-TSS (NM_001024703)	32.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	4.18081850707431	3.58561959515916	4.06844299934002	3.37065412872935	3.17183829794651	3.42819042799052	-2.38776136855362	0.000211913972840917	0.0052432167267758
Merged-chr19-47459092-4	chr19	47458573	47459573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	5338.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.30258631671353	4.81585752457689	4.55450899526872	4.60274391007725	4.36711587734564	4.78880534908257	-0.800550315760038	0.0835162982296409	0.382519080921008
Merged-chr11-75656635-2	chr11	75656135	75657135	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080775, intron 1 of 31)	intron (NM_001080775, intron 1 of 31)	620.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	7.4625890883836	7.32944745619188	7.18148886184561	7.17823277356506	7.31301067675595	7.11193120862835	-0.187109685176502	0.437122776311366	0.79976715856888
Merged-chr9-37544590-4	chr9	37544068	37545068	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020518)	TTS (NM_020518)	5313.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	2.56720903170298	2.62629961068599	2.81182912462013	2.67502295304129	2.7713070527249	2.5085549487987	-0.0399135316838961	0.959209090503318	1
Merged-chr9-21505447-1	chr9	21504947	21505947	+	545.0	f1_c57bl6.idr	intron (NM_001357721, intron 18 of 19)	intron (NM_001357721, intron 18 of 19)	4447.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	2.02190168592551	1.95188261134483	2.37520200821063	1.79508251557402	1.81067853198667	2.0724853111725	-1.93329269562552	0.071566235040041	1
Merged-chr6-39266366-2	chr6	39265866	39266866	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59593.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	2.73629083853101	2.65929021212523	2.92939453115787	2.53475376190609	2.55053010694257	2.57994184886536	-1.24824675070811	0.107950779253704	1
Merged-chr6-38940804-2	chr6	38940304	38941304	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21818.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.90222983785102	7.59047212451823	7.49884700994875	7.75497208288026	7.90057504313666	7.73742669873055	0.174365503613055	0.464942738464863	0.816631332252401
Merged-chr5-23418376-7	chr5	23417911	23418911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15942.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	7.57129516622934	7.84048564342283	7.69321762699955	7.61068868821928	7.9571625943563	7.77583083492868	0.123602664866768	0.601646805392067	0.881998497315248
Merged-chr4-101213760-4	chr4	101213243	101214243	+	975.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	MIR|SINE|MIR	51539.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	6.33308072316372	6.22504038007553	6.33792949155505	6.34435034956337	6.52020759341138	6.45344718990808	0.24128659834634	0.37183501830912	0.755841610252976
Merged-chr2-155692304-4	chr2	155691749	155692749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163452, exon 1 of 19)	exon (NM_001163452, exon 1 of 19)	135.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	7.43855412478797	7.45083001845379	7.37022045173226	7.42003885962433	7.21569560245766	7.20839813284733	-0.201985999358007	0.3828686433957	0.764304353909828
Merged-chr19-3847633-4	chr19	3847138	3848138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4135.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	4.13409824501828	3.85859108109157	3.97549722806059	4.26344998442499	3.99009822817806	3.83576787145356	0.148442648283084	0.774282679228552	0.94439333294121
Merged-chr2-158794735-4	chr2	158794233	158795233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291144)	promoter-TSS (NM_001291144)	-74.0	NM_145742	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	5.5979698596879	6.05698788404172	5.50507713236086	5.77199594238188	5.62117881469315	6.07121611295808	0.126767358226812	0.721966552635425	0.928606209603791
Merged-chr7-24112255-3	chr7	24111776	24112776	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021307)	promoter-TSS (NM_021307)	-44.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	3.12187403430394	3.17128747292079	3.10930084923558	3.3614287157015	2.81209550591397	2.93278482978228	-0.326468047323987	0.649626161699784	0.902254943460451
Merged-chr3-79565961-1	chr3	79565461	79566461	+	633.5	f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	1718.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.17560440593984	3.91665578283593	4.25156316318059	4.2960811883125	4.28021387528552	3.93024152691597	0.198693539401556	0.691713716181251	0.91847306943285
Merged-chr9-47625920-7	chr9	47625369	47626369	+	890.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	95517.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.72989017692517	6.79155653980128	6.46835624225768	6.59623270502959	6.86935176491279	6.92840182063614	0.195212645759726	0.472370805849071	0.820550293768681
Merged-chr7-45563832-3	chr7	45563312	45564312	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 6 of 8)	(TG)n|Simple_repeat|Simple_repeat	-6341.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	2.46884483311022	2.33162573572521	2.64002116688526	2.54970054607584	2.41239210500424	2.32794321657048	-0.289762268858768	0.727705678462069	1
Merged-chr1-180428527-2	chr1	180428027	180429027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54977.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	5.80996797661678	5.45287876469394	5.14805422314141	5.37514954552013	5.28782299085064	4.9843990738315	-0.537736080318414	0.168461205681039	0.54506046592946
Merged-chr2-129314107-4	chr2	129313607	129314607	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4135.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.70142152804906	4.37172468173471	4.67911640282032	4.43145873626637	4.39047605185811	4.70679075003063	-0.199956842613977	0.650735933430293	0.902668504553081
Merged-chr2-36218260-2	chr2	36217760	36218760	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12166.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	4.94748387556508	4.61703887766964	5.20023117569005	5.26017090394691	4.95209142459982	4.85020534983269	0.221090937421762	0.597428427111719	0.880398564804334
Merged-chr9-95698009-2	chr9	95697509	95698509	+	995.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	52349.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	3.99139855241879	3.73982115923905	4.06578025198822	4.27797051435884	4.11253870114567	4.22581569529699	0.791440263213897	0.110965741334651	0.444929591673307
Merged-chr12-3813948-2	chr12	3813448	3814448	+	906.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	6788.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.53477363317143	4.79569770756007	4.77228385583196	4.98356970185703	4.86584820002665	4.59264136260627	0.292368575603456	0.480286546058482	0.824537487093219
Merged-chr15-98662729-8	chr15	98662226	98663226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080981, intron 1 of 16)	CpG	163.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	8.73903411594591	8.90161507297477	8.59939157928258	8.5402276390113	8.74035613576118	8.43691909247287	-0.23812636841293	0.275624240151733	0.673202119620203
Merged-chr6-72758823-4	chr6	72758335	72759335	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	ORR1D2-int|LTR|ERVL-MaLR	30210.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	3.20917615923539	3.43982689116489	3.31688476972473	3.58238744373648	3.31577286514868	3.65778192409562	0.728656542580982	0.234932101256716	0.631024470284135
Merged-chr2-52895117-4	chr2	52894620	52895620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	37252.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.9780702457547	7.08652408402321	6.87734544907081	6.88989820993385	6.98209040925007	7.01918790003824	-0.0388410700113297	0.873573520727105	0.970440430875665
Merged-chr1-170901052-2	chr1	170900552	170901552	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	11889.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	4.87953733486109	5.18060003147721	5.13197238558308	5.21634691445846	5.49128805567077	5.22971676996335	0.527640996339865	0.152769064621123	0.521157262312804
Merged-chr6-100110175-4	chr6	100109655	100110655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177203.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	3.46352697794195	3.45326089656734	3.63052752308862	3.3959191668356	3.30557001959209	3.59873900148762	-0.308090490060013	0.601030189395563	0.881855262262798
Merged-chr12-3806465-4	chr12	3805979	3806979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271753)	promoter-TSS (NM_001271753)	-501.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.61228168377251	5.33025941742752	5.72968193558338	5.98396767844309	5.56561465124848	5.74043769776453	0.391085237780709	0.254739086363592	0.651754308411513
Merged-chr2-25224225-2	chr2	25223725	25224725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146116, exon 2 of 4)	exon (NM_146116, exon 2 of 4)	477.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	6.21252161595581	6.0486062722692	6.0513888518591	5.96442670500462	6.19642438957859	6.37432201626853	0.12640771266466	0.670459986223638	0.910029595108128
Merged-chr17-5569786-4	chr17	5569306	5570306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77206.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.99515267050331	9.12526264514726	8.54673161613579	8.65885746691181	9.0975228404167	8.36581000887783	-0.227099035573956	0.417625555449969	0.788200091800365
Merged-chr2-84633287-3	chr2	84632761	84633761	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	16219.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.4867094443867	5.43732456597625	5.99729487185646	5.63674726610274	5.74454714875589	5.88220026968834	0.19002983068479	0.584787148690446	0.874713344232516
Merged-chr3-79240084-1	chr3	79239584	79240584	+	548.0	f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	L1_Mus1|LINE|L1	27165.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.69905433035691	4.77741946672004	5.0812046149487	5.02796978533719	5.1009936613338	5.54340010134987	0.810678633145481	0.0449307858211041	0.267329811995876
Merged-chr9-77749500-2	chr9	77749000	77750000	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5035.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.59804094354583	4.64424200390092	4.828730018214	4.24495451318881	4.21519143293204	4.19909966334432	-1.19775834838625	0.00677723703393351	0.0763395612724434
Merged-chr6-97296071-2	chr6	97295571	97296571	+	900.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346637, exon 21 of 23)	exon (NM_001346637, exon 21 of 23)	-43291.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.26123373037112	3.26843707504992	3.76956258545022	3.61037881618065	3.08807381922985	3.4379382582066	-0.199605124580546	0.766160485977903	0.942366894267556
Merged-chr2-164911622-8	chr2	164911110	164912110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199027, exon 1 of 28)	5' UTR (NM_199027, exon 1 of 28)	140.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	9.05842724624989	9.04909134867293	8.55117107030116	8.97494550209172	9.15103753610914	8.64352736038002	0.0444801803291271	0.860811463220029	0.9676427717189
Merged-chr3-144700151-4	chr3	144699652	144700652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 6 of 10)	intron (NM_001282037, intron 6 of 10)	20183.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.86004471074267	6.63225258071964	6.3386883557919	6.63015874665297	6.97825251649996	6.80508347581726	0.278599675617709	0.333435643209087	0.724399817236076
Merged-chr1-143984088-2	chr1	143983588	143984588	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	20061.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.91352750337376	3.86688608866986	4.03518804666438	4.03886953440562	4.01742617248417	4.28021918287007	0.516770471100738	0.296308784024101	0.693022144754045
Merged-chr14-47001529-2	chr14	47001029	47002029	+	974.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163433, exon 1 of 12)	5' UTR (NM_001163433, exon 1 of 12)	189.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.88673529926181	4.01377206420126	3.85319802043656	3.94209412808408	4.07283071783646	4.11723563632009	0.36297793305649	0.465941641123987	0.817266460944204
Merged-chr3-106546237-4	chr3	106545745	106546745	+	753.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1380.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	7.02324979599199	7.16444086243026	7.01895876733684	7.56708989991408	7.65201675944685	7.25727485577791	0.650429855852161	0.00838774917275944	0.0890327635115407
Merged-chr5-120884105-2	chr5	120883605	120884605	+	715.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126529, intron 2 of 6)	MusHAL1|LINE|L1	3508.0	NM_011852	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	3.45586619470163	3.36787166890233	3.73162928182938	3.40040509174496	3.38767268498789	3.20738701694648	-0.68470467846209	0.268081741356687	0.665240807694185
Merged-chr2-129570395-4	chr2	129569911	129570911	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22428.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.07103930178418	4.76740943064304	4.83796586836113	5.58415562569482	5.87211692414393	5.63343402917323	1.60484420574254	1.06217435965438e-05	0.000422271400468811
Merged-chr5-74092961-4	chr5	74092454	74093454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_145133)	promoter-TSS (NR_145133)	-106.0	NR_015531	70036.0	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	5.82020100989864	5.95671927157444	5.79954554899574	5.76396282807092	5.49854469212138	5.67844287992418	-0.397872297155283	0.205537853366438	0.596131993192832
Merged-chr10-86920807-4	chr10	86920305	86921305	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 30 of 68)	intron (NM_138673, intron 30 of 68)	87137.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	3.78123475084069	3.87551107078834	3.75803941384809	3.75566246002209	3.53866528005329	3.55670146726911	-0.633568047352531	0.246178940394926	0.643286900808482
Merged-chr18-64888394-2	chr18	64887889	64888889	+	819.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	CpG	633.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	3.93289947241546	3.81440143755307	3.84911240274031	3.84196285038884	3.97818860189322	3.59036226027175	-0.133668592258829	0.804725972485866	0.953651704501661
Merged-chr16-17759145-3	chr16	17758657	17759657	+	845.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	-464.0	NM_145479	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	4.76353338697194	4.81057702148306	5.15252672613953	4.68564651034053	4.33142043492592	4.96359142047427	-0.547205741644579	0.221014020909003	0.61561513090473
Merged-chr14-50943341-1	chr14	50942841	50943841	+	779.0	f1_c57bl6.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-962.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	4.06000525445458	4.06037052044878	4.32214584162385	4.37564188346678	4.33597219857134	4.70024926891951	0.87296832568739	0.0633432336881144	0.327838762749308
Merged-chr4-133816383-3	chr4	133815914	133816914	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58317.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.73791053246009	5.4886293005068	5.56514941825484	5.43272562265692	5.4284864211825	5.59993932340571	-0.227984700408063	0.488817351903674	0.829423271678195
Merged-chr17-55946540-2	chr17	55946040	55947040	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	-1281.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	4.16729040533346	4.23184539908308	4.51802059531343	4.07340182807792	3.9708598335039	4.46817163649077	-0.354852682164495	0.476457930441678	0.82257619929543
Merged-chr12-100083604-5	chr12	100082912	100083912	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-28919.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	5.88021510740687	5.4107137142532	5.59839777058334	5.78604934880107	5.7530249454348	5.54559329352416	0.106010887668996	0.754941165098184	0.939180610396804
Merged-chr5-103715189-4	chr5	103714710	103715710	+	860.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-38952.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.76960016403436	3.51063812851274	3.63878476944948	4.15496078582126	4.21886333523914	3.76922329667797	1.34606258537022	0.014837601769526	0.131618832373256
Merged-chr10-128339567-2	chr10	128339067	128340067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	B1F1|SINE|Alu	1840.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	3.48255343044067	3.79304959534889	3.47534328470364	3.65649369426071	3.66397956427748	3.65726024240534	0.205689100233298	0.718190572517684	0.927293456311605
Merged-chr16-18877873-6	chr16	18877359	18878359	+	925.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010435, intron 1 of 24)	intron (NM_010435, intron 1 of 24)	1109.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	5.76234943789578	5.69560754542376	5.96000381630723	5.82147719805584	5.81394511176732	6.02020126991968	0.143093070604701	0.642985798774939	0.89955790576874
Merged-chr10-115245696-1	chr10	115245196	115246196	+	555.0	f0_balb.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	5797.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	3.20215915271261	2.94722119056431	3.07631116669043	3.04087375191406	3.22885779948914	3.20671479760959	0.358601573520253	0.587291401815264	0.875808418797345
Merged-chr13-60673871-2	chr13	60673424	60674424	+	985.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	B2_Mm2|SINE|B2	71713.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	8.23927017376605	8.46500597301686	8.30786360634116	8.22219301533205	8.69088664904763	8.18297779357995	0.0737766050509095	0.762871527521812	0.941663714620562
Merged-chr8-106972036-4	chr8	106971529	106972529	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	36279.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	5.21085464436232	5.67318582954899	5.56012620303839	5.5204576568402	5.29264609592865	5.00343233939811	-0.386603937075526	0.309443220593056	0.705003874352637
Merged-chr17-88462892-4	chr17	88462412	88463412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001355743, exon 2 of 5)	exon (NM_001355743, exon 2 of 5)	22208.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.76374320057402	5.61080404297121	5.47445052837942	5.71572104744989	5.66582625368225	5.65346674163769	0.090530952424251	0.77689085000409	0.944928941941213
Merged-chr7-30309476-3	chr7	30308973	30309973	+	727.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198027, intron 1 of 6)	intron (NM_198027, intron 1 of 6)	720.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	4.18468076791258	4.27724781636809	4.28585749677566	4.045514813372	4.04608099515736	4.3097219154328	-0.329796718012984	0.484060769405836	0.82665199605554
Merged-chr5-143113063-4	chr5	143112535	143113535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207110)	promoter-TSS (NM_207110)	-15.0	NM_001359851	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.76701065830343	6.33162365283319	6.4746616377658	6.67331403312421	6.09455258844306	6.51636759049262	-0.152670051608245	0.627430237004643	0.893240288820339
Merged-chr12-69501355-2	chr12	69500855	69501855	+	953.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25805.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.09454135868568	7.24938872607363	6.89340216042473	6.78823292581583	7.05289315363813	6.78367650720484	-0.313317811615607	0.232067929487967	0.628332301081437
Merged-chr2-66144059-4	chr2	66143578	66144578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19285.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.43548006654055	6.22887443400293	6.27140475756473	6.39345179032772	6.15090883084649	6.07332832513859	-0.16805279917397	0.559160818111163	0.864901733108576
Merged-chr13-29987580-2	chr13	29987080	29988080	+	801.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1517.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	3.58989519001865	3.40558962160507	3.39515587485538	3.40061254709491	3.21324741784855	3.23266896436257	-0.723823211732422	0.236426046011258	0.632720263621021
Merged-chr2-58156015-14	chr2	58155513	58156513	+	914.630981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	(T)n|Simple_repeat|Simple_repeat	4109.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	6.2930002234401	6.30927498046112	6.47565124062196	6.45816723530704	6.4414672756538	6.38932401810379	0.125611774885705	0.639325524217712	0.898021510164209
Merged-chr3-108441837-2	chr3	108441337	108442337	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	3422.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	2.63097611319661	2.6400882326868	2.39260095083367	2.52687020496353	2.36269041432069	2.66294013708987	-0.255749460885387	0.756545751091473	1
Merged-chr5-122732658-4	chr5	122732134	122733134	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	25090.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.8290957845242	6.16332007042782	5.89410890608916	5.6937435253155	5.8718347280984	5.26606781633083	-1.23934456582411	0.00198601221217894	0.0308191167756407
Merged-chr15-96466676-4	chr15	96466165	96467165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5822.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	5.34580720951787	5.36599936309598	4.86877786398264	4.21307795621929	4.12653476964717	4.09844394787623	-2.63901410898684	1.18165353284998e-08	1.04933860364334e-06
Merged-chr15-73641023-2	chr15	73640523	73641523	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16279.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.82936291192224	3.62860708903753	4.01806823043622	4.18850473824935	4.10788667021471	3.83606959952145	0.705857378535101	0.183225414641353	0.566231458237241
Merged-chr3-68794605-3	chr3	68794125	68795125	+	890.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33130.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	2.86686364848011	3.08493348578842	3.20806130738734	2.85643100865651	2.94210476764607	3.05603333617962	-0.48594719727389	0.483101043802526	0.826011835108275
Merged-chr13-91517161-4	chr13	91516677	91517677	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	ORR1D2|LTR|ERVL-MaLR	56080.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.42415041598107	3.37534379221193	3.16059916597771	3.1088742665189	2.97524659588012	2.84645749182928	-1.53461615161647	0.0291372587714617	0.205010403167241
Merged-chr2-73459911-4	chr2	73459453	73460453	+	854.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6064.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.16138405074899	4.56005813287678	5.0940959390876	5.30789397419356	5.15468268977732	5.09054901301094	0.476543842998463	0.245131821917937	0.642381314494918
Merged-chr8-24431034-2	chr8	24430534	24431534	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7912.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.67279816954357	3.60459490198009	3.41467813487277	3.58414480412442	3.60743595063817	3.85708077792415	0.37083459413549	0.516153149574763	0.844051513295388
Merged-chr15-31566773-1	chr15	31566273	31567273	+	542.0	f0_balb.idr	Intergenic	Lx5|LINE|L1	-2060.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	3.18489678420614	3.24503875262562	3.65400217242219	2.94124725051272	3.06760872324804	3.431107094655	-0.869836379626792	0.211989291425998	0.604420229358776
Merged-chr2-25259052-2	chr2	25258552	25259552	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3546.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	2.24916421509151	1.97592717354707	1.94476503641427	2.16736886706439	2.04461469199434	2.29450624392704	0.755513984929691	0.436075371513921	1
Merged-chr3-21938747-2	chr3	21938247	21939247	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-137905.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.32943663016803	3.32344096069668	3.41260090951525	3.24489442532984	3.27439703159266	3.37440808368409	-0.228541199814295	0.704117550853666	0.92237304068754
Merged-chr5-143054803-2	chr5	143054303	143055303	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	ID_B1|SINE|B4	58217.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.05084152026158	5.97071487446023	6.44907297700886	5.89420697982028	6.12295272587866	6.52435847257749	0.0582106031071536	0.86204760523721	0.967996224966109
Merged-chr2-33131916-4	chr2	33131457	33132457	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355201)	promoter-TSS (NM_001355201)	-521.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	4.24375140260549	4.07856341440466	4.34037484843475	4.05355537497374	4.0397822530594	4.14366829208853	-0.40528319527232	0.394396735988221	0.772340814634401
Merged-chr17-73028322-1	chr17	73027822	73028822	+	610.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-79663.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.39576555360474	3.19898407079739	3.19411620003469	3.4524813473844	3.26130022981199	3.54610609575928	0.58622456969393	0.345501845057188	0.733882070166902
Merged-chr7-31008363-4	chr7	31007864	31008864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26443.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	4.3322248887258	4.30649377253019	4.66997380846982	4.22369217532753	4.27122243184693	4.38266134687137	-0.380175363044514	0.406220954964048	0.780583800069297
Merged-chr6-122654568-4	chr6	122654058	122655058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	28134.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	7.54818020419108	7.27422490131705	7.18201249996165	7.42974620779163	7.76686097817144	7.43656301241533	0.309691911577653	0.224701492279041	0.619609949365475
Merged-chr11-86201726-2	chr11	86201226	86202226	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178309)	promoter-TSS (NM_178309)	366.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	6.99105866417507	7.31694448985625	6.97788404127773	7.11035987613879	7.38379851311641	6.99383031152066	0.107269906331184	0.686933794425213	0.916965854132552
Merged-chr15-83035044-2	chr15	83034544	83035544	+	915.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.42042839857871	4.5593117008684	4.78391499893116	4.89543729621147	4.8201065602138	4.81209535258009	0.602822752098764	0.140617979433704	0.501032559093762
Merged-chr2-130496384-3	chr2	130495925	130496925	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	46147.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	3.90400913298031	3.87938775930901	3.74768098412908	3.50855804014325	3.30743886254449	3.43145733938112	-1.57307135905955	0.00638400653636284	0.0730886932993705
Merged-chr1-136608572-3	chr1	136608074	136609074	+	696.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16327.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.10394088057831	4.78753075091527	5.12921049672846	5.32111041961801	5.14186153171018	5.25757995970091	0.478482974082867	0.199457593293776	0.587901786141996
Merged-chr10-77270318-2	chr10	77269818	77270818	+	916.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030262)	TTS (NM_030262)	11018.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	3.26469013667325	2.97316529516272	3.8276178489915	3.47518868226173	3.24975827648547	3.40743859532875	-0.0879476893812225	0.901010838893117	0.977060870926891
Merged-chr11-80145278-2	chr11	80144778	80145778	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3125.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	7.66995747506793	7.52003084596042	7.26343756356966	7.66733292895943	7.74593583461255	7.32087049728695	0.140876933151675	0.583050516282539	0.873907285988058
Merged-chr10-19999921-4	chr10	19999391	20000391	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	C-rich|Low_complexity|Low_complexity	65365.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.84329365347707	4.79752180162031	4.67419810764495	5.07827159438574	5.41982616487379	5.22247949972867	1.01347073873767	0.00809462186270551	0.0867960432927835
Merged-chr4-129739002-2	chr4	129738502	129739502	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011317, intron 1 of 8)	intron (NM_011317, intron 1 of 8)	3301.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	3.4151352471048	3.8248593926204	3.78258152312556	4.13225844947577	3.98365069911033	4.18633064897092	1.29059984930996	0.0194962783182215	0.15874612488046
Merged-chr1-156468692-6	chr1	156468163	156469163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	(CA)n|Simple_repeat|Simple_repeat	5665.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.97555371695073	8.02276501216268	7.50053752262344	8.00531693549123	8.09959811991367	7.56794196137336	0.0814722655869361	0.764511104839372	0.941979298344481
Merged-chr9-70011933-2	chr9	70011433	70012433	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	-615.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	4.94542935523223	5.12904232959739	5.32414671794554	5.22560761936765	5.33428351589612	5.52734825218896	0.465296940115346	0.201424113793025	0.590984054786189
Merged-chr15-82046412-2	chr15	82045912	82046912	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	ID_B1|SINE|B4	1186.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	4.28035862659587	4.28122775837619	4.23615233568128	4.53050649494135	4.42489946786369	4.56275901896536	0.611920924110669	0.162661514272664	0.536188662408322
Merged-chr6-113700923-2	chr6	113700423	113701423	+	979.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347356, intron 2 of 7)	intron (NM_001347356, intron 2 of 7)	3873.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.9160905162146	5.11798546482749	5.2499127487176	5.13471353389239	4.94640753129463	5.31277782509243	0.0710133333860801	0.851513441598551	0.965282904163871
Merged-chr11-49253249-3	chr11	49252761	49253761	+	975.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110148, intron 3 of 3)	MLT1G3|LTR|ERVL-MaLR	2709.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	4.50614100416174	4.64917398363103	4.53116179615331	4.72806422343864	4.53125334826856	4.83164290106712	0.304130132196207	0.467629764299353	0.818066971403175
Merged-chr9-64013737-3	chr9	64013216	64014216	+	847.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	8343.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	3.6390579449733	3.66441325241797	3.68339743802698	3.41313306239936	3.72996429302691	3.539663320046	-0.298920608445781	0.599720756439705	0.881186026873301
Merged-chr12-26444190-3	chr12	26443679	26444679	+	995.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021384, exon 6 of 6)	3' UTR (NM_021384, exon 6 of 6)	12273.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	4.68761171343778	4.68745346953053	4.86113208192818	4.50197972928808	4.44416079029924	4.5011027830502	-0.633104711505975	0.126258726725197	0.4751576722456
Merged-chr4-105248209-7	chr4	105247712	105248712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90865.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	7.78743175441535	7.75382422761375	7.81558606990139	7.82648302034859	8.14566704217533	7.66913826924159	0.172835162866967	0.469119937685021	0.818899830283793
Merged-chr16-23233606-4	chr16	23233079	23234079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	7558.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.51110169056694	6.15431890755489	6.03301188015175	6.30840012968857	6.43693170835701	6.40979285444607	0.21019939997382	0.478147584995934	0.823624523176113
Merged-chr19-5510639-4	chr19	5510148	5511148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-131.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	7.00840377315608	7.04133597592284	6.65872877745316	7.00436493922812	7.32830647144575	6.8492331000747	0.249621284800856	0.370662640256113	0.754953050459714
Merged-chr12-51377427-4	chr12	51376927	51377927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029825)	promoter-TSS (NM_029825)	-86.0	NM_001306178	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	7.9618569277882	8.67085144719183	7.68048357876196	8.05875303657427	8.52094389650181	7.71749084463188	-0.0494023516019349	0.884245543193068	0.973466734537782
Merged-chr2-72260268-2	chr2	72259768	72260768	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25369.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	6.53896443398618	6.15814378009724	6.55783351677742	6.7993337783458	6.80246974817318	6.71509144574865	0.558105518060205	0.043005885956247	0.260117304546587
Merged-chr12-108635709-4	chr12	108635208	108636208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163396)	promoter-TSS (NM_001163396)	-45.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.32850834907708	7.49666546847596	7.39912419249058	7.33912803637795	7.61816251145514	7.61407799546192	0.175995623463932	0.454962481032086	0.810666797758316
Merged-chr3-54735476-4	chr3	54734972	54735972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	-67.0	NM_025442	66248.0	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	6.79950398798517	6.92008640206088	7.15503875299935	6.96554086551579	6.86207387860788	7.23544624345246	0.0961239549855895	0.717457604913084	0.927077249271794
Merged-chr9-44567827-4	chr9	44567310	44568310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37082.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	8.25301334759437	8.11031950360494	7.63238517105026	8.36766550447252	8.3481841140548	7.90799756778133	0.277438964849757	0.305234154261759	0.701486464326093
Merged-chr15-63615372-2	chr15	63614872	63615872	+	680.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135764.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.66945540266784	5.46145215489324	5.5192360697417	5.75940652104728	5.5963791399468	5.03468626591101	-0.0794984265211369	0.832440808260157	0.960616839788396
Merged-chr5-92437323-2	chr5	92436823	92437823	+	776.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-2124.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	3.58378037272663	3.52129530531487	3.93563151959816	3.6314632697026	3.52012469414373	3.95828819316523	0.0785810211775283	0.892731695014438	0.975146620821922
Merged-chr16-4907628-4	chr16	4907124	4908124	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	21524.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	6.5262962104616	6.63452274590973	6.45966459457004	6.62410388782174	7.03810062203414	6.69385636015937	0.412994448113669	0.134401284108194	0.490121594468564
Merged-chr3-105895435-4	chr3	105894941	105895941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8980.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	7.58569601198912	7.52686747652298	7.16561622426493	7.4057367456225	7.70496174695377	7.40180812215548	0.103965536753933	0.684189433661726	0.915803912169824
Merged-chr11-95857428-2	chr11	95856929	95857929	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1388.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	3.08586574109826	3.21647614135146	3.30003798556201	3.22893225991192	3.14769058935206	3.52739552927212	0.42096068283745	0.51141164224134	0.841400291314575
Merged-chr19-31764447-3	chr19	31763960	31764960	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013833, intron 1 of 17)	CpG	573.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	3.45270667159269	3.4445959696921	3.29668023016754	3.08600351073473	2.77890124140244	3.00721919635382	-2.06884610319304	0.00368170310043448	0.0489192276441177
Merged-chr4-41774200-2	chr4	41773688	41774688	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001347065)	promoter-TSS (NM_001347065)	-12.0	NM_001048179	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	3.6468951788379	3.50906935190539	3.77822389194049	4.98101552025722	5.08923234325122	5.06856011988774	4.38658841851473	3.53223449381811e-13	7.27952995988691e-11
Merged-chr7-44553962-4	chr7	44553458	44554458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	7.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	8.42675198103502	8.66044894811986	8.60743466020861	8.33194288632597	8.82424735577413	8.657995281843	0.0766456170314712	0.742101582926453	0.935108337322314
Merged-chr3-61416109-4	chr3	61415609	61416609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51602.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	8.2880171526597	8.31930944223279	7.93231210421551	8.13562355337788	8.53683245030204	7.85434611367572	0.0277520109767055	0.917996164589431	0.981747877135909
Merged-chr4-83274926-2	chr4	83274426	83275426	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49263.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.8445137767715	4.96797789598461	4.90845965618125	4.51729961678241	4.48057658880179	4.75353637241586	-0.770108424825383	0.0567578649697988	0.307126144015837
Merged-chr4-133822568-2	chr4	133822062	133823062	+	828.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	52169.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.21652241391291	2.19151718354905	2.25301918213612	2.53626254476965	2.37961338418117	2.7114367033275	2.22680639956838	0.0131066704494327	1
Merged-chr14-76152695-4	chr14	76152191	76153191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41800.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	7.5617654641728	8.02378528194929	7.7565689183411	7.69248262774424	7.8915133932445	7.58301697606573	-0.0908828841215538	0.71581848017206	0.92647595514209
Merged-chr5-72195635-4	chr5	72195138	72196138	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-7691.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.91215453370882	3.9366872284696	3.66877242524403	3.85419343396763	3.7071161420618	3.74038241022654	-0.271538329414547	0.610330210352995	0.885531676978709
Merged-chr19-46487678-2	chr19	46487178	46488178	+	962.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-13970.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.31551277958612	3.95882325041735	4.55831669378618	4.18328842868334	4.36142220771889	4.42732401531563	0.0939866137873533	0.848653013769763	0.964356989789491
Merged-chr8-120490583-2	chr8	120490083	120491083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	1717.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	4.97945954472957	4.8614182506625	4.82690442563329	4.98137827284788	4.84677659725911	4.96653519009194	0.0749521546045121	0.843716810285218	0.963622916593135
Merged-chr10-68268857-3	chr10	68268375	68269375	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	9851.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	4.39481451099607	4.6833040867283	4.80748713117759	4.5584413667171	4.126331556292	4.262629215443	-0.774767804733455	0.0982112609094491	0.417772982783845
Merged-chr9-50589658-2	chr9	50589158	50590158	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	14191.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	3.32790907519322	3.09075591433072	3.35788284211909	3.24062798671752	3.24730992087214	3.6811557767788	0.536555417299802	0.405883304829165	0.780439975167702
Merged-chr14-103186851-4	chr14	103186354	103187354	+	938.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 49 of 84)	Lx6|LINE|L1	-87288.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	4.47018469168735	4.64428392111536	4.33283112966202	4.31750071618531	4.68953992539651	4.30722415337039	-0.0793174453117305	0.863676001393581	0.968269312109804
Merged-chr6-87184057-4	chr6	87183552	87184552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	79306.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.75265006350268	3.4914506233097	3.42952776227063	4.26851186574288	4.16582179073983	3.80508636828705	1.68479625380808	0.00376792213912666	0.0497652802146748
Merged-chr2-52424407-4	chr2	52423887	52424887	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182994, intron 1 of 5)	CpG	487.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	6.95188185954778	7.20523308318462	7.05961287881175	7.56852924827456	7.20393703830838	7.02251887519966	0.318444943595144	0.235858406921818	0.632197478437993
Merged-chr18-66437999-4	chr18	66437512	66438512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20592.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.17258059057243	6.34425392996414	5.80190237883688	6.35007825568447	6.70027838250055	6.21042627335978	0.510875718462031	0.114607540483764	0.452084205393623
Merged-chr16-20382164-4	chr16	20381681	20382681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 12 of 29)	intron (NM_013790, intron 12 of 29)	44213.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	4.95708308774846	4.72694973957509	4.4469263963234	5.25672399043539	4.94665527916131	4.86655108138081	0.655890017640654	0.124356431097737	0.471882976960073
Merged-chr17-31511576-2	chr17	31511076	31512076	+	846.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_021322, intron 1 of 10)	intron (NM_021322, intron 1 of 10)	911.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	5.28271551471271	5.56522407868192	5.93431780535541	5.52173382124885	5.51644968271336	5.58500628222613	-0.130912498221438	0.713827676461907	0.925599802465018
Merged-chr14-74918774-4	chr14	74918296	74919296	+	796.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	29081.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	6.55415070189629	6.51841241209674	6.32628492309025	6.82694571202695	6.79173405498197	6.44639959715166	0.368599806609737	0.182007905355	0.564649559348511
Merged-chr4-83266151-4	chr4	83265651	83266651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58038.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.73501442449554	6.86068769677024	6.80179024697659	6.14628891435753	6.30327857642365	6.25388266618148	-0.904591088741731	0.000619696172590728	0.012427977616035
Merged-chr1-39614601-4	chr1	39614102	39615102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36580.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	5.74930455363955	5.7418643215693	6.28103267509158	6.03142035026481	5.71903679383375	6.58616400945771	0.365665271555813	0.336008121979573	0.726090328603253
Merged-chr6-99540830-4	chr6	99540328	99541328	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19835.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.79692715285059	3.65593888909123	3.43782443857452	3.80606639805619	3.8639213228778	3.84397422881051	0.62876037833543	0.258220688810807	0.655681500032641
Merged-chr6-122657913-4	chr6	122657400	122658400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31476.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	7.48506761668438	7.50894995002672	7.16411856386627	7.65618674546935	7.78463087495988	7.16938063182971	0.250670519752323	0.360205056596369	0.746468561887568
Merged-chr19-6335376-2	chr19	6334876	6335876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168490, exon 1 of 8)	5' UTR (NM_001168490, exon 1 of 8)	337.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	5.34161247853589	5.31317771082595	5.22503434279356	5.15496065334171	5.12901083778076	5.25661168247237	-0.248480121266929	0.474086887744026	0.821247902639899
Merged-chr3-40894139-4	chr3	40893639	40894639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026622)	promoter-TSS (NM_026622)	-138.0	NM_026622	269423.0	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	4.75756090122238	4.61002817905696	4.64356389951216	4.86333147310762	4.70550811797657	4.86379706177887	0.311613667144271	0.43550780420582	0.799103232168076
Merged-chr6-120364744-3	chr6	120364214	120365214	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-345.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	7.42938535916032	7.80840343001087	7.18217722942133	7.70959983127386	7.85220535803142	7.31493629556219	0.209389388851216	0.463899409681526	0.816038286358001
Merged-chr9-24505250-4	chr9	24504776	24505776	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2136.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	4.96699827126424	5.03673630336622	5.45716175714552	5.66271241410405	5.53608672913345	5.34189030308275	0.728521781302685	0.0481168791941242	0.278093094380402
Merged-chr1-136640122-3	chr1	136639620	136640620	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15219.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	3.32528293386412	3.35536403561156	3.55723280673721	3.52905220083315	3.3792396764359	3.52244722927462	0.245020056762174	0.676875986759959	0.912576714783976
Merged-chr15-99002629-2	chr15	99002129	99003129	+	668.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	16664.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	3.03050856525323	3.01466452660353	2.95830593567323	3.25209015415187	3.23670324945129	3.27058026046991	1.09320378755454	0.0925146181776217	0.405196206659212
Merged-chr1-78895954-4	chr1	78895479	78896479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151519, intron 3 of 3)	MTC|LTR|ERVL-MaLR	79068.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	4.97243561425132	4.49928292820062	5.02835500044639	4.56856844505874	4.80562855793293	4.81485855309112	-0.257398509872857	0.551074421960001	0.860974886448004
Merged-chr11-103264683-3	chr11	103264205	103265205	+	956.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	2696.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.85090065960287	6.82982268854715	6.69855583614089	7.34076997193771	7.5662815958173	7.23623407834633	0.900007559714723	0.000296663453930226	0.00690290063608117
Merged-chr1-86214390-4	chr1	86213862	86214862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	59582.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	4.60512493489693	4.60903202729633	4.35547759398222	4.10846995817335	3.79360201677742	4.28952554213321	-1.27689782980689	0.00950509459799018	0.097033835744488
Merged-chr2-113469715-4	chr2	113469221	113470221	+	797.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	28657.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.24876654687412	2.34780922947248	2.20128412104537	2.38893601157876	2.24447714053024	2.47392062632687	0.649717303621988	0.447740447446129	1
Merged-chr10-21995792-10	chr10	21995321	21996321	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161850, exon 4 of 12)	exon (NM_001161850, exon 4 of 12)	1155.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.3450275287097	6.22681083460831	6.13697748268679	6.45984475584571	6.35484171651839	5.88083276997944	0.0412100755016436	0.893877944270669	0.975280227461205
Merged-chr13-101763217-6	chr13	101762749	101763749	+	775.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	4968.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.07518472146267	3.86119503232106	3.90325348807577	3.98936543078115	4.36074277793618	4.12243589089891	0.643573969764216	0.202094408514094	0.591773948258361
Merged-chr17-86145046-7	chr17	86144492	86145492	+	953.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 1 of 20)	CpG	183.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	4.94307457270014	5.14267269855763	4.89538032153488	5.15862982908405	4.67372225744478	4.961136052849	-0.136241389792496	0.735303974291429	0.932670321537214
Merged-chr8-80272695-3	chr8	80272207	80273207	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214699.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	4.64189451141595	5.11098730907519	4.97159920940192	5.16408632962684	4.5729244375262	5.34873383583318	0.294392186042589	0.514785620438382	0.843210843733192
Merged-chr1-191075441-5	chr1	191074895	191075895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	HAL1|LINE|L1	12374.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	7.73068790169706	7.64827450169315	7.74407026905405	7.71026701614631	8.090593206113	7.82587328688442	0.264989679722398	0.252852213378599	0.650244514834543
Merged-chr11-3930762-2	chr11	3930262	3931262	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1199.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	5.63402466177651	5.62332050600987	5.68825161905391	5.51306344624771	5.58869907658366	5.72413277079555	-0.074848377753569	0.813043038306461	0.955886703779984
Merged-chr10-88368852-1	chr10	88368352	88369352	+	590.0	f0_balb.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10560.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	3.60771731352847	3.31552197114748	3.95698243375266	3.6812211796825	3.41350880134032	3.64470977769817	-0.219853069125267	0.720741768602639	0.928324696220711
Merged-chr5-35103283-4	chr5	35102779	35103779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2418.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	4.07501753659996	3.93274122133203	3.95720726649925	4.01090951849284	3.90093120046508	4.02623212181138	-0.0457211529950045	0.926290460849096	0.98342277625656
Merged-chr9-90126454-4	chr9	90125952	90126952	+	946.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11632.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.20513334875617	5.64671949053639	5.42470214950743	5.82374121234812	5.85723675461834	5.71643222978914	0.670905096731383	0.0468123836031692	0.273844545476132
Merged-chr4-135957631-2	chr4	135957131	135958131	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357530, intron 6 of 9)	B1_Mur4|SINE|Alu	-6094.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	2.06920267038198	2.15639076389402	2.19967648674099	1.98763605246563	1.83994980528303	1.86585968135838	-2.1545623838842	0.0384481403386918	1
Merged-chr3-103018817-2	chr3	103018317	103019317	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1729.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	3.60921986165507	3.6186636945632	3.5486480513813	3.83894338902739	3.47161666836731	3.77683986428608	0.362605350715993	0.522452048799858	0.847630327909223
Merged-chr2-34754316-4	chr2	34753813	34754813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151469, exon 2 of 27)	non-coding (NR_151469, exon 2 of 27)	919.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	7.5871026067666	7.28185174665303	7.27045807212259	7.45955533222517	7.16922159089223	6.9310505676911	-0.268472238019247	0.317618745340608	0.711455045153077
Merged-chr11-83661607-2	chr11	83661107	83662107	+	875.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-977.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	5.36878121543248	5.1093651576728	5.36295516620186	5.23433875536588	5.03128395804026	5.48222821478407	-0.0661152356028549	0.858343535008061	0.966893979238307
Merged-chr6-54158549-1	chr6	54158049	54159049	+	606.0	f1_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-106309.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.89497684161792	3.82219853732183	3.69345962283517	3.82691307361638	3.98485089003905	4.2852291677553	0.693884119912022	0.191768653716895	0.578581026812988
Merged-chr15-38661888-4	chr15	38661399	38662399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-5.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	8.12010446213161	8.5249628725619	7.79848308183916	8.19932867772036	8.3664991564674	7.73494605365937	-0.0784480263500709	0.787968687826062	0.948776817409006
Merged-chr13-99190801-2	chr13	99190301	99191301	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	5978.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.72155489306256	6.77601132214912	6.42493231461404	6.86098387781011	6.62778721112868	6.61302183737903	0.0736294522155333	0.786808281777578	0.948629894081617
Merged-chr2-103934873-4	chr2	103934379	103935379	+	774.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23116.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	3.29928371229534	3.35031187716642	3.21463081399916	3.43082622550722	3.48382033116111	3.40337921025693	0.581411693606007	0.332274192753863	0.723518174479399
Merged-chr2-127391569-4	chr2	127391085	127392085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	28299.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	3.73559117419773	3.43124600862313	3.78384307479306	3.73313154862505	3.58091369625925	3.80371266393185	0.167253406342578	0.766837713716122	0.942573703853445
Merged-chr10-80150132-2	chr10	80149632	80150632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021565, exon 2 of 9)	exon (NM_021565, exon 2 of 9)	450.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	5.04437844525305	4.99156815799125	5.22972908858733	5.39521359052422	5.46320479295213	5.70881980562042	0.875282576090506	0.0132194005167949	0.122122779860272
Merged-chr7-110774899-2	chr7	110774399	110775399	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	2295.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	4.44764849458179	4.41375781707765	4.59811549055469	4.32493262931562	4.3695775016961	4.37559743662335	-0.323304806133268	0.457555126768344	0.812344696037543
Merged-chr7-27450279-2	chr7	27449794	27450794	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	-2124.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	5.16681706451205	5.55894607911686	5.68734291025233	6.00436739607704	6.17555459953032	5.80188557450492	0.961192493317653	0.00504677670870555	0.0616097705953597
Merged-chr7-35057252-4	chr7	35056762	35057762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-696.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.76182860548969	8.04582795623915	7.70386982697072	7.69475434534019	8.24730181235241	7.85555731766943	0.158290764374597	0.543819581288437	0.857551302506722
Merged-chr11-32551750-2	chr11	32551210	32552210	+	898.5	f0_balb.idr|f1_balb.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	18444.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.27395221488985	4.38418974748041	4.41374304102339	3.89583979593412	3.94884518857159	4.27032730980762	-0.894248165803185	0.0644677806412984	0.331003029223816
Merged-chr5-100417070-2	chr5	100416569	100417569	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-835.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	5.25249394640035	5.49193356392082	5.45842025668007	5.22753597153016	5.12746501474641	5.46433071680725	-0.267087213305126	0.450215160623043	0.808229465856472
Merged-chr8-25976744-4	chr8	25976309	25977309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029884)	promoter-TSS (NM_029884)	-65.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	8.23881991515444	8.20502966521368	8.09417217097946	8.26069551999314	8.02347307072921	7.95752798446486	-0.13237033777235	0.545292656518254	0.858059274547204
Merged-chr13-20151760-4	chr13	20151257	20152257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	61250.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.09797951053907	6.1139383331165	6.06759677990874	5.6735405248605	5.90834367853319	6.04050472609594	-0.37657448289097	0.210025351356856	0.601990679838143
Merged-chr15-102243605-4	chr15	102243094	102244094	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2906.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	3.84805256120488	3.75286754144608	4.6779853432648	4.45275001919106	4.14306779187875	4.36756738677773	0.440089088191495	0.447219731827376	0.806316645191341
Merged-chr11-80147407-2	chr11	80146907	80147907	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5254.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	5.854775843939	6.0909019047314	6.17935210042575	6.14282042898275	6.40192117202957	6.44729919268215	0.494527518486161	0.0947411837494284	0.410324099601611
Merged-chr4-106908424-4	chr4	106907905	106908905	+	837.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3065.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.6840940126581	3.26406144408245	3.9254821288004	3.49607809990888	3.74077106537856	3.94817800931039	0.295256332036195	0.637195512104991	0.897338937840938
Merged-chr12-79686788-2	chr12	79686288	79687288	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	237945.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.20948407109089	3.25305788673778	3.22943231477981	3.07825546140402	3.08820640317318	3.12758117535373	-0.582647481172457	0.358734057572176	0.745080785526968
Merged-chr10-22355172-1	chr10	22354672	22355672	+	707.5	f1_balb.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-6722.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	4.49677409198244	4.5245935300321	4.43202161380465	3.98910654433453	3.75184062228217	4.14439527325067	-1.50224043721116	0.0020709791396497	0.0317820052106182
Merged-chr2-73451755-2	chr2	73451255	73452255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2134.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.3823487952575	3.37847602663973	3.44959114588913	3.45264689439858	3.17414883105698	3.81707739729297	0.359924753677254	0.570499719151406	0.869220609141201
Merged-chr3-116125856-2	chr3	116125397	116126397	+	647.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 3 of 8)	intron (NM_011693, intron 3 of 8)	3791.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.76329523610262	5.72901672886952	5.87129423129911	6.03743402331855	6.2645462696951	5.7518213051316	0.466236970690427	0.142440603595441	0.503787601222075
Merged-chr6-50379390-4	chr6	50378892	50379892	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	3445.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	5.50622623345026	5.39033934940997	5.46202087619255	5.40888245360361	5.66809408867571	5.27341985809844	0.0430466704248219	0.900552064735938	0.976862077000417
Merged-chr10-127635780-2	chr10	127635280	127636280	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-7206.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	6.50523638016976	6.57364386577576	6.63337102075702	6.00128268581092	6.18988439658589	6.1810480775943	-0.726636098263561	0.00805418353975466	0.086462715001407
Merged-chr5-34369781-4	chr5	34369296	34370296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-137.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	7.03950347112476	6.73468873252875	6.75545720635748	6.75277835967402	6.63145417334128	6.70315440995342	-0.250579194553772	0.337318483672585	0.727252847318973
Merged-chr6-72141396-4	chr6	72140894	72141894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-18197.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	7.71087396634628	7.30486712082131	7.23983953535568	7.60837300226366	7.72445716180396	7.40207997499576	0.216438863319876	0.405551879395944	0.780279107725129
Merged-chr6-115463150-4	chr6	115462664	115463664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001127330, exon 6 of 8)	exon (NM_001127330, exon 6 of 8)	41098.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.69325195173408	6.82774958724263	6.25279289041275	6.28921060882381	6.36059177119891	6.29235722105908	-0.501855657678752	0.0874026268354733	0.39195026111196
Merged-chr6-91682473-4	chr6	91681932	91682932	+	781.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1635.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.98275673819568	6.219975750846	6.44236932900005	6.09192184365059	6.12052200704926	6.32357633356834	-0.0720315721467068	0.810993878690984	0.955096593239846
Merged-chr2-27757715-3	chr2	27757224	27758224	+	883.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	47141.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.53229494393667	4.96989792369447	5.65950043780417	5.265862974275	5.16988109818722	5.37023216797903	-0.289562842154615	0.457754723687701	0.812525429217996
Merged-chr7-110394169-3	chr7	110393655	110394655	+	724.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	MTC|LTR|ERVL-MaLR	172452.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.00564904778434	3.98340185899998	4.16701195673113	4.42533461479386	4.33995781198627	4.36912779372927	0.915582268916275	0.047711431860492	0.276666988845996
Merged-chr7-35055035-6	chr7	35054549	35055549	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	1517.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.76614574383303	6.85547554321057	6.68428026526112	6.99059175554105	7.16221053333998	6.7758554148914	0.341185349771606	0.189478109157048	0.575362911712272
Merged-chr19-12457888-1	chr19	12457388	12458388	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-2891.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	7.13837764330015	7.24756015189998	7.03583133728244	7.40640091761308	7.60863253557077	7.0664170043427	0.361744020128131	0.167436830381078	0.543309432685286
Merged-chr18-5101040-3	chr18	5100538	5101538	+	943.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	54449.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	6.36435850607351	5.88137438149716	6.19615091470698	5.67349408997961	4.96594925113715	5.13144320629408	-1.58425817675867	4.29780685896259e-05	0.00139256975514236
Merged-chr5-72259534-4	chr5	72259034	72260034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 10 of 22)	intron (NR_003966, intron 10 of 22)	56191.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.06187122030316	5.94916925761799	5.63502514112357	5.84481766180561	5.84597974831538	5.41776982005376	-0.309829732580486	0.361653003618245	0.747458707295016
Merged-chr9-107612313-4	chr9	107611841	107612841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3100.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	9.05658138395297	8.96936691701637	8.77538264145254	8.63021955731117	8.70929649561501	8.48159059126124	-0.451255974617783	0.0315666879991997	0.215224596446855
Merged-chr4-122854432-2	chr4	122853932	122854932	+	712.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008917, exon 7 of 9)	exon (NM_008917, exon 7 of 9)	18205.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	5.68288174367642	6.12487594122547	5.70472807213942	5.36457406465751	5.58819012504229	5.81756229361974	-0.482950497235878	0.165458635836951	0.540492417944118
Merged-chr2-116991565-2	chr2	116991065	116992065	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91413.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.74211516615839	5.43933641820316	5.70907697748295	5.77417159021528	5.69230777387343	5.66504872817277	0.146495103145946	0.649024235696361	0.902056560253111
Merged-chr7-110236318-4	chr7	110235829	110236829	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	14626.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.92267092469096	4.77349414606277	4.95691297080588	4.52696474784969	4.11601728139286	4.65941619720081	-1.0668520309449	0.0169670083304365	0.144710007088865
Merged-chr1-9878577-2	chr1	9878077	9879077	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 7 of 17)	B4A|SINE|B4	-30061.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	3.31299496592081	3.12538459800997	3.27044580148696	3.91713215787015	3.66229204352184	3.88598402798755	2.21867210166548	0.000339644437388004	0.00772162140606039
Merged-chr10-70095205-4	chr10	70094728	70095728	+	841.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1893.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	5.69165102881663	5.80628492725012	6.13423775751015	6.14181057364466	6.2343409393613	5.95088100261242	0.423204633682028	0.176668344724825	0.557127430636861
Merged-chr15-6396133-4	chr15	6395646	6396646	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	9398.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.8626847049904	4.50558164348719	4.52856146653939	4.3610869229697	3.99519029988195	4.33446284801577	-1.06997886210139	0.0227641706025137	0.175955513933485
Merged-chr6-87530400-4	chr6	87529970	87530970	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	2789.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.05867757720702	5.52923354522915	5.70603686926415	5.76332423521391	6.04597430902191	5.84636774854642	0.192079716056507	0.569401694383156	0.8688875602138
Merged-chr8-46742799-3	chr8	46742322	46743322	+	832.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	3077.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.22731243388412	6.46841662021918	6.41966016262987	6.65247868607904	6.73235176271458	6.34380691465363	0.361941298455211	0.199327141671897	0.587746298743231
Merged-chr8-126563386-2	chr8	126562886	126563886	+	586.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30050.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.83851081399946	3.80701736372804	3.72032460730692	3.62161362001155	3.75450166551461	3.629121772997	-0.392720538854585	0.465247188773621	0.816870040376346
Merged-chr8-13641414-1	chr8	13640914	13641914	+	713.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	36173.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.43872558805717	3.71707365919638	3.98409423621768	3.341349263618	3.13693175545745	3.52924228533826	-1.43738418882805	0.0242258498458357	0.18322659370205
Merged-chr10-95367895-4	chr10	95367382	95368382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	31606.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	4.83879290142445	4.42759569641583	4.07494964148651	4.74862082906372	4.66357341303715	4.49954671146976	0.353497128982529	0.47431148572731	0.82139231300766
Merged-chr17-25133415-4	chr17	25132911	25133911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011930)	promoter-TSS (NM_011930)	20.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	8.04212154504626	8.24633364932469	7.40419669381316	8.08544725947244	8.16180198057468	7.50694082938689	0.00382888918405984	0.990228076460844	0.997758510367569
Merged-chr17-36023771-4	chr17	36023288	36024288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3228.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	6.91787769826267	6.68229397742992	6.58256626858821	6.70805885421512	6.91083883780838	6.3963513876129	-0.0605819327074376	0.833038938083993	0.960900298881182
Merged-chr14-32167532-3	chr14	32167056	32168056	+	909.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	1767.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.99755389695075	6.85039132071666	6.82782279377608	7.36325173303638	7.41452270548226	7.03211536373128	0.59284450513014	0.0194161626717253	0.158312598097885
Merged-chr11-11774209-4	chr11	11773712	11774712	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34750.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.3808090926898	4.40758433461509	4.4743454703493	4.28596960246866	4.29816854208662	4.61901416346319	-0.0497156330926481	0.911242953350162	0.98004232415071
Merged-chr8-70896816-1	chr8	70896316	70897316	+	910.0	f1_balb.idr	promoter-TSS (NR_002901)	promoter-TSS (NR_002901)	627.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	6.38645356812379	6.59025171189436	6.41799073506054	6.2133738937745	6.27186382028908	6.67664860728532	-0.127278404698155	0.662741997274612	0.906804932599005
Merged-chr9-40482649-4	chr9	40482132	40483132	+	769.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-26868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.80295453966961	4.98930183857659	4.84305855882144	4.13469489464166	4.48853307951002	4.22836763707614	-1.4069302374409	0.00192382254847054	0.0300107661441951
Merged-chr7-45447640-6	chr7	45447085	45448085	+	770.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 10 of 15)	intron (NM_030678, intron 10 of 15)	12301.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	3.42487316212574	3.73090198435674	3.44566907367558	3.59409055627377	3.58135073032251	3.73237833765637	0.300891061243319	0.602113566049824	0.882226875541274
Merged-chr6-124739255-2	chr6	124738755	124739755	+	814.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	-546.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	5.81936702252147	5.5254582997906	5.90664987583204	5.91240761920787	5.85766892649926	6.23850431591088	0.444878624177649	0.172147276456476	0.550749681454482
Merged-chr1-155145792-4	chr1	155145295	155146295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1019.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	7.34421281019842	7.38605096475347	7.05046214472141	7.27456336876851	7.35618890796707	7.33028868386027	0.0647956730300225	0.787886916235043	0.94877064431094
Merged-chr8-25089709-3	chr8	25089208	25090208	+	678.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	12103.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	5.49650416211833	5.10791590389443	5.35055068886771	5.59220473143236	5.28183963675023	5.28744139704327	0.134879887545313	0.709979825167603	0.924166640014037
Merged-chr15-63504019-2	chr15	63503519	63504519	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-24411.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.42450961173385	2.63816285584335	2.70649969304431	2.56969484447567	2.38765787566219	2.46581805617085	-0.698457593942707	0.387234660801557	1
Merged-chr11-35769419-4	chr11	35768928	35769928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-67.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	7.0678918185579	6.52661001902574	6.71712772505458	7.20753038885147	6.42875549408294	6.55446249725685	-0.0176948698036342	0.958123086079558	0.990000537228272
Merged-chr17-27572999-2	chr17	27572499	27573499	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7272.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	3.09450822052607	3.01018056406557	3.23536542620497	2.83215076783585	2.75568963622099	2.90581327228404	-1.39878927718172	0.0476790513153375	0.276602686045566
Merged-chr12-80060508-3	chr12	80059993	80060993	+	898.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	52520.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.66479980027663	3.35536323452859	3.55593299247434	3.5977761639874	3.33376723336323	3.15564453430994	-0.567514999086532	0.37237901925141	0.756172233352971
Merged-chr6-116197729-2	chr6	116197229	116198229	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4355.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	7.30360461647884	6.96999064756952	6.90868045407248	7.05962416157081	7.36454539261001	6.96705166055635	0.109134176583234	0.687802721096243	0.917193226920892
Merged-chr18-53264296-4	chr18	53263782	53264782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	18620.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.37646125279111	8.31384631320655	8.05343679894042	8.19213479071482	8.21789527510027	7.92402371050546	-0.192494370841583	0.398851017432805	0.775429226349887
Merged-chr3-21954277-2	chr3	21953777	21954777	+	598.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122375.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.50948482974608	4.69442888759927	4.46771601318077	4.60672978691665	4.46814211170909	4.84771815741395	0.174529490506032	0.685814126273512	0.916508786099555
Merged-chr10-94486192-3	chr10	94485712	94486712	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-28645.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.69028975632239	4.79282780662336	4.86482255069938	4.34365972673154	4.34193390159919	4.67409913554795	-0.80319360853701	0.0596696417859134	0.316235875878998
Merged-chr13-94977258-7	chr13	94976775	94977775	+	794.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 1 of 12)	intron (NM_172590, intron 1 of 12)	931.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	6.3056522084226	6.41113551411217	6.06067488569689	6.52430638938522	6.66091026648609	5.94631129373979	0.249621425238784	0.444941781483093	0.80461425583303
Merged-chr19-59074982-4	chr19	59074486	59075486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1083.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	7.07828249755347	7.34430091466217	7.34862618689889	7.0129159797965	7.2693747340342	7.3081811437272	-0.0869674268732169	0.727870357724645	0.930303780614302
Merged-chr7-101027840-4	chr7	101027319	101028319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15766.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	5.09989404974838	5.19809192025597	5.06096180357801	4.65501006045609	4.42451404668607	4.24429347342124	-1.53211821224767	0.000302245423185886	0.00701412997098025
Merged-chr15-78325949-4	chr15	78325458	78326458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007780)	promoter-TSS (NM_007780)	-32.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	6.64715401662427	6.28547853433677	6.75172081576332	6.75418650133317	6.67692767715836	6.74990850807543	0.2490236101676	0.368683503604779	0.753594740654151
Merged-chr4-155833989-4	chr4	155833505	155834505	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025338)	TTS (NM_025338)	2736.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	3.11287590660069	3.09072863346507	3.10507417765822	3.23409828266134	3.02933053136799	3.34434616047056	0.429121863889009	0.508605929236012	0.839834140220874
Merged-chr2-156420867-6	chr2	156420417	156421417	+	912.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013510)	promoter-TSS (NM_013510)	8.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	5.08797577032733	5.16148357639344	5.28396978694009	5.59168651467294	5.52155803142834	5.0725621265559	0.501238523204442	0.172593953235727	0.551226813025854
Merged-chr10-84403503-2	chr10	84403003	84404003	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	36968.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.27966867845612	2.91967727531468	3.10587611432336	2.91997223167295	3.13968672782537	3.11960189321252	-0.204490649490852	0.76555281945791	0.942148336413151
Merged-chr7-99432508-3	chr7	99432010	99433010	+	992.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362168, intron 4 of 17)	MIR|SINE|MIR	-33494.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.36497131528319	3.01642358907366	3.14528583206218	3.00502415398481	3.08553973937709	3.15915497558334	-0.444832852557967	0.503789533261826	0.837214289667465
Merged-chr9-95511417-4	chr9	95510881	95511881	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357977, intron 1 of 25)	CpG	615.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	8.21533367933242	8.61433361558647	8.41192493585329	8.44529449924237	8.62859112001074	8.38055027990643	0.0928889622692381	0.68197693952336	0.914908045004202
Merged-chr8-107048459-7	chr8	107048003	107049003	+	998.775513	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_139229)	TTS (NM_139229)	111.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	5.63001664917397	5.66670810551663	6.32207338922984	5.43631982061889	5.52712242805418	5.80101993202701	-0.563707558669815	0.128691790079014	0.479799601167289
Merged-chr6-31457159-4	chr6	31456653	31457653	+	917.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 8 of 17)	MTEb-int|LTR|ERVL-MaLR	58325.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	4.34655225737981	4.68825866405295	4.97341150680243	4.57152933598937	4.32330505051918	4.61324190708002	-0.442731804466218	0.335857727162037	0.725979061409716
Merged-chr9-65541057-2	chr9	65540557	65541557	+	746.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	39030.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.33205483082376	7.23105832977445	7.12181333683359	7.20134994954857	7.2438485156909	7.06180811180348	-0.0885940524795888	0.70961474632524	0.92401439884764
Merged-chr10-128627318-2	chr10	128626818	128627818	+	849.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-812.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	3.4547925646166	3.31580824357402	3.43219042363395	3.17501899219984	3.33603219366604	3.39403119730719	-0.382056416662197	0.529429422758971	0.850904712036958
Merged-chr13-55022892-4	chr13	55022398	55023398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1513.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	7.35507364445277	7.39801399625894	7.6144639995672	7.62913583384713	8.06732768241986	7.43063032897294	0.423165397442654	0.115448890692327	0.45366277255564
Merged-chr7-105746619-4	chr7	105746118	105747118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009906, exon 13 of 13)	3' UTR (NM_009906, exon 13 of 13)	-2280.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	5.73727052616676	5.36961859811555	5.4486375928279	5.90327694115101	6.31772832706314	5.94923914774371	0.978587894418764	0.00371227867012643	0.0492241606321593
Merged-chr1-151757303-3	chr1	151756790	151757790	+	746.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311165, intron 1 of 20)	intron (NM_001311165, intron 1 of 20)	1916.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	4.33198093733537	4.05881961089588	4.04942278696974	4.47890210966634	4.63231489431657	4.01389419706476	0.673340119197841	0.184986686234638	0.569076167857577
Merged-chr7-102017519-7	chr7	102017030	102018030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010531, intron 2 of 6)	intron (NM_010531, intron 2 of 6)	625.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	8.58048921707698	8.59167780606153	8.39475164042834	8.72702667390782	8.98679186124977	8.34618964215677	0.26671325223099	0.27765097531593	0.674855968126621
Merged-chr1-191110638-3	chr1	191110162	191111162	+	885.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12248.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.21002049098416	7.40990596634109	7.23299603027028	6.96483043783798	7.23029812801815	7.4003589154931	-0.123875606320851	0.624344121985267	0.891959990078637
Merged-chr16-91547027-4	chr16	91546535	91547535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-59.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	8.78150529691673	8.43460033897936	8.4264890291124	8.70804083040026	8.76399937733532	8.45306769235586	0.125727074650524	0.583246788960509	0.87400013033251
Merged-chr7-112285780-3	chr7	112285340	112286340	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	60004.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	3.06503378489332	2.67338563587587	2.98421285449545	2.52451488581846	2.3959293224198	2.69671084265726	-2.24356395343333	0.00875656280912157	0.0918462218859685
Merged-chr5-148556738-3	chr5	148556293	148557293	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4005.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.53960376163444	4.69350453816375	4.98616802307122	6.25508763635707	6.77426472482577	6.36671502427364	3.39577985908512	8.90106415776491e-20	5.65373852243742e-17
Merged-chr10-94059798-4	chr10	94059289	94060289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	23788.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	5.44704765348145	5.27686073046257	5.3387914912688	6.08301023081145	6.25599945739113	5.83969367583456	1.32002700650404	4.82327200048629e-05	0.00153356827136593
Merged-chr18-80322683-7	chr18	80322121	80323121	+	990.2976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001190373, exon 3 of 4)	exon (NM_001190373, exon 3 of 4)	41633.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	3.99244682275743	3.82506133670347	4.07994455899035	4.08835145324862	3.80440943628229	3.95843107026557	-0.0389419049178402	0.939283041776191	0.986642049891601
Merged-chr17-5783455-3	chr17	5782955	5783955	+	784.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15202.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.11948228919456	5.18970700933425	5.11320304689311	5.01852804191856	5.06606687558086	5.42188148670514	0.0545792246272253	0.882697161941566	0.973231787904583
Merged-chr8-26981220-4	chr8	26980749	26981749	+	797.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3913.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.36000735363389	6.3876000084136	6.25051949043097	6.34352319320255	6.36431682672734	6.68181999838624	0.203426018165409	0.467432560497	0.817990683108999
Merged-chr10-120364261-3	chr10	120363775	120364775	+	576.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010441, exon 5 of 5)	exon (NM_010441, exon 5 of 5)	-25248.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	3.94288865287808	4.13456301260756	4.14137677517548	4.27523726814424	4.31701156140805	3.8513984062846	0.28431159963356	0.575835409418737	0.87142885060749
Merged-chr12-38845986-1	chr12	38845486	38846486	+	550.0	f0_balb.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	62275.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.12126464892791	3.37199071359741	3.0490856746874	3.05836287915579	2.78036960294896	3.12243811148525	-0.913375518754862	0.196237848172371	0.584043988940614
Merged-chr9-32680317-4	chr9	32679794	32680794	+	977.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-15748.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.66192083158736	6.56504958212532	5.98831787992306	5.83759849047547	6.298900625578	5.59719350443293	-0.808903868448359	0.027886037604226	0.199404785213046
Merged-chr13-75788393-4	chr13	75787886	75788886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51499.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.81325809305936	4.53743214290725	4.74734705713899	4.76388127845551	4.72562700803682	5.08993581141621	0.358997948699359	0.385108108871388	0.76623192225821
Merged-chr19-29371383-2	chr19	29370883	29371883	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	3945.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.33265595544983	6.86180842459035	6.69344923738908	6.62147459683242	7.19972624779635	6.9165252318466	0.452951827886839	0.139286132810521	0.498718069503763
Merged-chr10-37136208-3	chr10	37135702	37136702	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2724.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.67230701239902	5.4194130845429	5.61821950574205	5.50343478112634	5.36475612784299	5.36134948382012	-0.306201918803954	0.358857921953548	0.74519810754794
Merged-chr9-67424207-3	chr9	67423751	67424751	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081242, intron 2 of 57)	intron (NM_001081242, intron 2 of 57)	135452.0	NM_001081242	70549.0	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	3.25981799301261	3.42040008259648	3.35329552106794	2.89807203279865	2.89406103492161	2.89061962898104	-2.14205862569093	0.00247141345840885	0.0364095911910913
Merged-chr15-62041328-4	chr15	62040813	62041813	+	911.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	2056.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.86492377521608	6.7578762057918	6.36403946557173	7.00464208528326	7.24680526547972	6.689694449154	0.494642678239094	0.0967166039484891	0.414632138767885
Merged-chr6-28262797-3	chr6	28262292	28263292	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	6.0704282243058	6.01257781072472	6.21774200302078	6.03039102618778	6.0636129319139	5.90251136690835	-0.154320798787467	0.596121562542911	0.8798867145239
Merged-chr6-8410249-1	chr6	8409749	8410749	+	652.0	f0_balb.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	98912.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	2.79730274914989	2.68903944150429	3.02830926414592	2.81929142589933	2.61097258529009	2.74673812662489	-0.592547457184504	0.427341736480069	0.794296048630321
Merged-chr16-10950730-4	chr16	10950233	10951233	+	970.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35936.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	3.51274263490967	3.26558119680388	3.32782727351728	3.55419368272649	3.47589615541562	3.45743712047667	0.457415055361711	0.441217814138436	0.802431628755704
Merged-chr11-63898901-4	chr11	63898372	63899372	+	920.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	23412.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.82802912285146	4.76891430322089	5.03015997805287	5.21035807176189	5.21173806999149	5.75692134852492	1.10759687627413	0.0050878719603971	0.0618844686567347
Merged-chr16-10969640-4	chr16	10969121	10970121	+	937.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	23500.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.20047523121564	5.18866476959878	5.29945622338513	5.2930523947448	5.36701703826873	5.20205262142596	0.140762591141524	0.684004681315592	0.915657391324866
Merged-chr1-64927608-4	chr1	64927105	64928105	+	955.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29219.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	7.46845356955454	7.66243659257748	7.38733562602573	7.46368080059342	7.71827385959446	7.45522018851782	0.0606432814629334	0.799996789394416	0.952400567323345
Merged-chr9-89256743-4	chr9	89256240	89257240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	45356.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	6.99429865511256	7.09752259427583	6.78134636900637	6.8469823613782	6.76073697915064	6.77741830614494	-0.274034752550117	0.278475935734488	0.675669961526661
Merged-chr4-102558068-4	chr4	102557564	102558564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-11996.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.33718681112053	3.78708358756083	4.11734004555062	4.35218096541929	4.17378667868725	4.08945304381075	0.30464072623691	0.55462031603337	0.862883680820358
Merged-chr6-29609896-4	chr6	29609407	29610407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347079)	promoter-TSS (NM_001347079)	-58.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	7.22618229189558	7.74077459816859	7.68529288484318	7.25090879165917	7.43794391692616	7.39903533570004	-0.300587853105851	0.247819865905032	0.644879469769509
Merged-chr5-147527126-2	chr5	147526626	147527626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 10 of 18)	intron (NM_028291, intron 10 of 18)	96970.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.57489347983732	3.4578533670336	3.70453743545229	3.37449555743532	3.15303993076056	3.41073669206814	-1.03072751619714	0.0902146613801675	0.399413724812226
Merged-chr11-23660608-2	chr11	23660108	23661108	+	550.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	Lx8|LINE|L1	-5066.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	4.10366581193242	4.2969069521863	4.19218742154938	4.28097042747786	3.97917853543414	4.66304113607063	0.337217976916922	0.505955107039458	0.838203647443267
Merged-chr12-106027007-3	chr12	106026516	106027516	+	809.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	16753.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.7929792383085	3.71939757122586	3.69261291975022	3.70690554551709	3.3745231741523	3.86243700591288	-0.27945926324684	0.626614559778994	0.892916235446326
Merged-chr5-21197333-2	chr5	21196833	21197833	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1_Mus2|LINE|L1	11066.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.57412535604671	3.56776179446778	4.16460630761345	3.43816889155057	3.75184713576841	3.8386195594648	-0.344400207948585	0.571579718313075	0.869547320544841
Merged-chr16-18498758-4	chr16	18498258	18499258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023120)	promoter-TSS (NM_023120)	45.0	NM_001285491	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	5.77790996740217	6.0994326694069	6.2261076202698	5.78193372195971	6.17555720006135	6.08139831365419	-0.0241159890915654	0.940262881372282	0.986792088790777
Merged-chr15-102411280-2	chr15	102410780	102411780	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013672, intron 3 of 5)	B3A|SINE|B2	4964.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	3.39591442522574	3.28304171456103	3.28611500218003	3.24095865485492	3.497537855444	3.57512549935305	0.459849057748522	0.450495731847766	0.808420653372776
Merged-chr18-80709096-2	chr18	80708596	80709596	+	779.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-923.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.63880657026987	5.90215726946727	5.48072778004035	5.82772799650527	5.72995152731401	5.74392294565056	0.126293595069363	0.697939291205407	0.920123730782958
Merged-chr16-92466326-4	chr16	92465830	92466830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081549)	promoter-TSS (NM_001081549)	-161.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.80503181642572	4.48196125367099	4.94542806807835	4.76105740396176	4.29865476905451	4.56352597483228	-0.477989561407676	0.290111063741807	0.687733205116261
Merged-chr16-13863176-2	chr16	13862676	13863676	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	RLTR53_Mm|LTR|ERVK	39969.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	4.80198209346796	5.13131923903014	5.26520419094376	5.13308997125665	5.51182648850904	5.32855152518681	0.543680513194508	0.155735717472561	0.525698076245714
Merged-chr7-81836204-2	chr7	81835704	81836704	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	-6773.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	5.77315449721468	5.68261484727253	6.0297706727262	5.6324930573037	5.59194282666003	5.89192016881729	-0.226003412659575	0.485869335792616	0.827573679263522
Merged-chr8-35429163-4	chr8	35428583	35429583	+	648.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53342.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.13063226870992	3.18792422846323	3.18254721480028	3.250690238721	3.16566695169082	3.13682432343662	0.0822656406784325	0.896099297093492	0.975747732221155
Merged-chr11-101425562-2	chr11	101425062	101426062	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026865)	promoter-TSS (NM_026865)	-234.0	NM_001361123	73635.0	Mm.472804	NM_026865	ENSMUSG00000097487	Ptges3l	1110069E20Rik|1700113I22Rik	prostaglandin E synthase 3 like	protein-coding	6.28117956661754	6.55639122264815	6.49707927718413	6.37796810620118	6.11299921140326	6.35676155069249	-0.27664854747938	0.33021204724449	0.721789606895393
Merged-chr19-4625638-4	chr19	4625128	4626128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023131)	promoter-TSS (NM_023131)	-11.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	7.28266460447007	7.25137258871695	7.14019634738602	7.41791730500838	7.29930327908364	7.1075788496893	0.0847983346402935	0.723569648248365	0.929080851011554
Merged-chr10-39731950-4	chr10	39731425	39732425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	82.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	8.34348826943784	8.53217990227769	8.1071671200267	8.25718728816623	8.26863820426833	8.20412528203084	-0.141419538102658	0.525964260571813	0.849272421520383
Merged-chr11-110980448-3	chr11	110979936	110980936	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	12403.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	6.34037784895264	6.15597885052278	6.08997284392561	5.65319120486568	5.60391113552664	5.79671679719856	-0.924745558004165	0.00213798398757851	0.0324808054844683
Merged-chr6-37427342-4	chr6	37426834	37427834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	14814.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.08523306227555	6.08829200371315	5.6470868996631	5.87100601610463	6.08907105243012	6.19526711996778	0.148876074259853	0.641618598401728	0.89910238191635
Merged-chr6-96113055-1	chr6	96112555	96113555	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_182808)	promoter-TSS (NM_182808)	-99.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	3.29849342310717	3.64962210636985	3.59651904683175	3.41233004440389	3.45864718659182	3.56209238843622	-0.170629170149094	0.773538216367776	0.94412263195524
Merged-chr4-116627500-4	chr4	116627005	116628005	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284229)	promoter-TSS (NM_001284229)	-8.0	NM_001284229	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	6.74587558275186	6.86643422877283	6.99151837866466	6.90227888685486	7.23533257659121	7.15013555826085	0.368275624146801	0.150592863379064	0.517489620222838
Merged-chr4-116053708-7	chr4	116053205	116054205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028142, exon 1 of 6)	exon (NM_028142, exon 1 of 6)	171.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	7.75456061431751	7.78732317001552	7.67933034293789	7.94975981614858	8.1053616751196	7.7449089250585	0.294392702098567	0.194157732146607	0.581328465709111
Merged-chr2-11395163-4	chr2	11394648	11395648	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	RLTR25B|LTR|ERVK	3352.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.55282550366916	5.79626724789991	5.55783908418252	5.93171178994218	5.62580650418782	5.70454292410787	0.205356893241933	0.529275826110032	0.850847288056475
Merged-chr3-68929371-2	chr3	68928871	68929871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 12 of 19)	L1M2|LINE|L1	59785.0	NM_001167996	68725.0	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	2.52587883236857	2.41999481024163	2.6664565547072	2.38324248985135	2.34662215248041	2.55719986015201	-0.674308884159849	0.406677611691024	1
Merged-chr10-127633248-5	chr10	127632631	127633631	+	878.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	4.86829459336588	4.55524858949431	4.70219193884165	4.73691518242773	4.15441853483243	4.84180597934529	-0.265074414264158	0.575281899225559	0.871001510588939
Merged-chr11-82004995-4	chr11	82004466	82005466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30611.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	5.29672230377348	5.11744035294231	5.1492560725069	5.28423476093746	5.32026917162981	5.51767983476339	0.357784645452187	0.306917598029457	0.703091920100449
Merged-chr16-90726893-1	chr16	90726393	90727393	+	935.6666869999999	f0_balb.idr	intron (NM_025642, intron 1 of 4)	intron (NM_025642, intron 1 of 4)	478.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	6.3530060471545	6.48016084411127	5.99685450509605	6.25477768912703	6.29325530513261	5.67387794540478	-0.307251138468147	0.364396960684391	0.749773790733149
Merged-chr18-70620292-4	chr18	70619801	70620801	+	940.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	52009.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	4.00424903172511	4.19327597612152	4.51010596225601	4.41128326411075	4.73487511142489	4.9340827789561	1.16918530070244	0.0144420468242656	0.129353480317922
Merged-chr7-45465807-2	chr7	45465307	45466307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 3 of 5)	intron (NM_007527, intron 3 of 5)	1091.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	5.22130230233981	5.05830006464853	5.08520635943522	5.0323314936145	4.83384359815392	5.04644189837193	-0.338956025907162	0.361322767251934	0.747252891113536
Merged-chr16-90925668-2	chr16	90925168	90926168	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026502)	TTS (NM_026502)	9181.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	2.98401854571546	2.8719757444717	3.33166325763551	3.09774502814132	2.78996159173064	3.07550769416337	-0.357767609144009	0.61784011093634	0.889002558462873
Merged-chr16-36997857-4	chr16	36997350	36998350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-7383.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	5.19277471593054	4.92602985127018	4.76199919041499	4.86386636799414	4.99193744634018	4.47100419618921	-0.377841828869425	0.382058178633543	0.763758051205099
Merged-chr10-26760599-4	chr10	26760105	26761105	+	680.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11907.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.10925200730125	2.99749980230236	3.28145214427313	2.97058190785396	2.79697650812076	3.01636661861572	-0.951556253230375	0.168744203809743	0.545438812408496
Merged-chr16-17693309-2	chr16	17692809	17693809	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	29591.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	4.81033425463993	4.48454793517711	4.2900978092731	4.277546241389	4.35528282760719	4.16189719544011	-0.720970633694242	0.125922340921653	0.474643086904141
Merged-chr4-138913489-2	chr4	138912976	138913976	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028453, intron 1 of 7)	CpG	471.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	4.11911517084107	4.05651579360619	3.95881546650585	4.04476062021106	3.7593602586823	3.97863414586007	-0.370782899210509	0.46300102054631	0.815604460584161
Merged-chr18-36735027-4	chr18	36734518	36735518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-52.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	7.57875681681236	7.59677857809203	7.57561471318961	7.54703257563208	7.68933162664695	7.47255396092434	-0.00776770320123363	0.972213563698316	0.993868590220018
Merged-chr7-4071279-4	chr7	4070806	4071806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8102.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.18651085865399	6.1458456311122	6.22918071284269	5.94159113275378	6.16000088524938	6.30847287260984	-0.0758436983165034	0.793518344039726	0.95047905539387
Merged-chr10-70181592-4	chr10	70181111	70182111	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23053.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	3.86986775070041	3.86524188852239	3.66666496395184	4.2287995053025	3.79529612676043	3.84965090563941	0.504081561610831	0.352467523940515	0.740177053161581
Merged-chr5-124497738-2	chr5	124497238	124498238	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	14583.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	4.78994114569822	4.56558034678431	4.23796120888359	4.54310429216693	4.68548470095453	4.406448726808	-0.0107394178252221	0.98136207974282	0.995697792113651
Merged-chr11-78382870-3	chr11	78382364	78383364	+	805.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	3744.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	2.53020232148992	2.45745163772058	2.70742859264884	2.56886395157458	2.31980916818762	2.5980036801931	-0.402238228807817	0.620537962226132	1
Merged-chr10-91082094-4	chr10	91081603	91082603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027078)	promoter-TSS (NM_027078)	640.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	7.81073596726206	8.28529058349409	7.85505330555983	7.97674995435832	8.01582522137182	7.80161697619658	-0.098999104015377	0.688139213228287	0.917193226920892
Merged-chr2-60125328-4	chr2	60124836	60125836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	404.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	8.27242888129125	8.14770207277669	7.7920843270834	7.91231695972901	7.83052156485903	7.69495783349973	-0.391393520460099	0.102649353159137	0.427236732425048
Merged-chr5-139463931-1	chr5	139463431	139464431	+	546.0	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3397.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	3.91399567559112	3.62449556688486	3.82638770049632	3.67124702202803	3.74568101734975	4.03639677119678	0.0864899456026362	0.873982104671803	0.970523587907961
Merged-chr2-116971139-2	chr2	116970639	116971639	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATGGTG)n|Simple_repeat|Simple_repeat	70987.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.18924182793789	4.95689560981739	4.99624707712666	4.81413446283181	4.88435232711263	5.22309561402512	-0.170462067282351	0.661633320932591	0.906493864324557
Merged-chr3-79114415-4	chr3	79113920	79114920	+	848.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	L2c|LINE|L2	30467.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.96260703970508	3.86642986731097	3.99932011866467	4.35869660038617	4.45146670781366	4.51477487190088	1.40638931915239	0.00282193078285354	0.0401379857401158
Merged-chr19-44295962-4	chr19	44295458	44296458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	2282.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.1230970752191	4.04586161599834	4.29307601852668	4.46689620145805	4.25692121339367	4.02748828406635	0.322189769572685	0.50588153397194	0.838177729332582
Merged-chr4-57947109-3	chr4	57946615	57947615	+	781.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 3 of 4)	GC_rich|Low_complexity|Low_complexity	9296.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.91533226394683	5.97180454026931	5.63370297197937	5.47653023180499	5.71195580964995	5.35823995926249	-0.584532336180131	0.082172504139234	0.379123019025808
Merged-chr11-29694270-4	chr11	29693725	29694725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	451.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.81734881758795	6.59651463024367	7.06603310556715	6.98354572095958	6.7507043465302	7.03616602933703	0.141523429914334	0.605127303713267	0.883394857670054
Merged-chr5-99333213-2	chr5	99332713	99333713	+	701.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-80286.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.63193161475782	4.2502334689633	4.69570042177365	4.61008140973674	4.42189861839289	4.48203728830017	-0.0696312433067544	0.876609479377479	0.971344419120637
Merged-chr13-41484156-3	chr13	41483671	41484671	+	899.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	3189.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.20666541117697	4.34514102609807	4.03429079650282	3.94621176021779	3.87080953663471	4.15051279243152	-0.656988166920573	0.185563526473822	0.569776372221624
Merged-chr6-124814166-4	chr6	124813663	124814663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001326594)	TTS (NM_001326594)	133.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	6.1573695540454	5.63985635407848	6.12600816025077	6.10673418286885	6.2221124663317	6.14423621515079	0.291788500843052	0.358186366869919	0.744596677605421
Merged-chr19-34448024-2	chr19	34447524	34448524	+	754.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27111.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	2.76807490771921	2.89756876102059	2.83762585682709	2.76634973865021	2.78555026673471	2.90996038760286	-0.0874772241156122	0.901671029221464	0.977334309271934
Merged-chr7-128360541-2	chr7	128360041	128361041	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	57631.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	3.57926373107499	3.39237381613185	3.46103559760338	3.3325624062701	3.19749674603541	3.3658216377121	-0.725076541371034	0.228969481948485	0.624413538894527
Merged-chr13-73459367-4	chr13	73458937	73459937	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7946.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.87819836138947	3.86635446026726	3.70991488903759	3.77288631858974	3.6535261713056	3.83232582058983	-0.248481379023952	0.638471563946707	0.897576536084903
Merged-chr11-89009062-3	chr11	89008445	89009445	+	609.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	9542.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.37189973567429	3.42029876765439	4.05395071719692	3.76916608754244	3.58485554615482	4.16206583317889	0.664872083090368	0.297238525619385	0.69386498175224
Merged-chr6-140623487-4	chr6	140622996	140623996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009637)	promoter-TSS (NM_009637)	-6.0	NM_001005605	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	7.80071942080552	7.34880562760054	7.28012179480159	7.6010689001477	7.50998048056328	7.52290561841318	0.057720230386166	0.822408073974677	0.958041123079214
Merged-chr10-98952316-2	chr10	98951816	98952816	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	37164.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.19192865442944	4.08957058772362	4.17966900185175	4.05602366991668	4.02909250851506	4.06052949065669	-0.304589995426904	0.52094395773631	0.846846888510977
Merged-chr7-141168016-4	chr7	141167555	141168555	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	631.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	6.83607905967324	7.01521435480319	6.81145074625063	6.99981733400907	6.97007080892582	6.62375212235735	-0.0149451874213635	0.954774462440416	0.98964546481769
Merged-chr5-105625153-1	chr5	105624653	105625653	+	552.0	f1_balb.idr	Intergenic	Intergenic	-74816.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.71912269823792	4.45767616665051	4.46945676475204	4.47235228768287	4.2791300595245	4.40582639836783	-0.441123326960077	0.315663765841572	0.709904338715791
Merged-chr5-32690110-3	chr5	32689606	32690606	+	794.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56236.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.72740766848926	3.73853082862789	3.65263989884089	3.89420745056333	4.11816397562962	4.03197964237461	0.978299693392991	0.0598038110386665	0.31659911099829
Merged-chr8-13287973-4	chr8	13287501	13288501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-12.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	7.82379833534238	8.09467971750528	8.06114304603362	7.93574227315445	7.94612163335222	7.6052619073445	-0.217139769036571	0.356719658953912	0.743448231367782
Merged-chr11-101463805-2	chr11	101463305	101464305	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	2394.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	5.03105365658657	4.83367050378906	5.16055866397735	4.94142984101331	5.03011421524413	5.06035347655298	0.00904358625726287	0.980881886902797	0.995623353730457
Merged-chr3-105017600-4	chr3	105017089	105018089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	35364.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.78214248839053	6.69919394135318	6.63034647473003	6.72863752555939	6.66980864019004	6.39726870449291	-0.147557528119168	0.578278782643135	0.872407113854157
Merged-chr16-94505358-2	chr16	94504858	94505858	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	21271.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	2.81666170006186	3.0545828343453	3.20682000460117	3.15507187411818	2.55663447256663	3.16845973723979	-0.173881433427586	0.831548371869201	0.960464332375456
Merged-chr12-111694533-4	chr12	111694002	111695002	+	985.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16397.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	7.13111995496863	7.12124540400369	7.18102523395516	7.30183844567449	7.32087779346882	7.30824850745914	0.251324786670612	0.270067453203251	0.667076985193509
Merged-chr1-58393672-4	chr1	58393145	58394145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025824, intron 1 of 11)	CpG	509.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	6.6421935096323	6.40134538986584	6.80419091136458	6.85527334318516	6.22979858196568	6.84838279860114	0.0766648591761584	0.807692746933092	0.954557080558103
Merged-chr19-5841705-6	chr19	5841227	5842227	+	959.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_003513)	TTS (NR_003513)	3751.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	6.66183813803717	6.33941940822907	6.27970920950429	6.31424471928003	6.57289348554413	6.34000023390535	-0.0379554226551107	0.895837827475884	0.975665889379756
Merged-chr7-127769081-4	chr7	127768616	127769616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	-699.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	5.86659058944204	5.8757669890396	6.09499630786409	6.15011684513078	6.23090450330065	6.04546206587581	0.361342970119225	0.216915580754392	0.610549109497049
Merged-chr17-24170532-2	chr17	24170043	24171043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361532)	promoter-TSS (NM_001361532)	-865.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	7.65482970374528	7.67213949813461	7.77287678385067	8.01240534358154	8.1356148439628	7.72401375502892	0.398270144757414	0.0853895491039838	0.386819120309467
Merged-chr7-80014037-4	chr7	80013524	80014524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10790.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.32578479163215	5.24139281014995	5.4197275720361	5.20007676205731	5.61653160058262	5.42370374877456	0.209631904967449	0.552575171515624	0.861798524356576
Merged-chr19-10688731-4	chr19	10688219	10689219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361963)	promoter-TSS (NM_001361963)	-16.0	NM_181403	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	8.5186674785097	8.66891034708589	8.43252606345298	8.41392559478114	8.36255371023359	8.49354464429626	-0.173546762115119	0.400171820807573	0.776372018141352
Merged-chr1-97769371-6	chr1	97768885	97769885	+	986.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026250)	promoter-TSS (NM_026250)	707.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	6.22266945504086	6.61230213954936	6.22862810456008	6.45091503954266	6.60882019468949	5.95958686937922	0.0131640352620661	0.967753577842406	0.992594535508871
Merged-chr19-41345152-4	chr19	41344638	41345638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39932.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.51745617211626	8.46060114649254	8.30000452762571	8.61398311725907	8.8235390249577	8.46278503134653	0.297755394801676	0.174026587500817	0.553210993472106
Merged-chr19-5936137-2	chr19	5935637	5936637	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11321.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	2.95367090348759	2.73825226942922	3.11133799579543	2.90111817592069	2.65932872237348	3.28896517331833	0.147176918147377	0.847818716868378	0.964318271116593
Merged-chr13-85288567-4	chr13	85288077	85289077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145452, exon 1 of 25)	exon (NM_145452, exon 1 of 25)	909.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	7.54669996154	7.80816959022989	7.82591809967405	7.64234348540872	7.63224342121503	7.83440232139551	-0.0415250336655263	0.857276281289763	0.966735539271044
Merged-chr9-110655920-2	chr9	110655377	110656377	+	839.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	-626.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.59930803188174	4.64061572415102	4.97497679630847	4.72296532415063	5.15920851535675	4.70577231031368	0.348393712439296	0.417574134084272	0.788153455961773
Merged-chr9-66795613-4	chr9	66795135	66796135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177583)	promoter-TSS (NM_177583)	-212.0	NM_177583	208117.0	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	7.58822032920153	7.7940796846063	7.59932594924827	7.62416504888985	7.87705594010213	7.23896972684751	-0.0691653409938963	0.793459958789873	0.950432322089225
Merged-chr1-184619195-2	chr1	184618695	184619695	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61504.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.18335091449918	4.11451398461643	3.81705696737944	3.72145683199469	3.76788436496019	3.98942035303615	-0.708821812416571	0.17783890302064	0.55892688546374
Merged-chr6-28262482-2	chr6	28261988	28262988	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-887.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	7.06664954531568	6.61046690113181	7.0550236896075	7.07779833144272	6.74698279054892	6.71200446551495	-0.101153284571643	0.723024544760551	0.928989158354973
Merged-chr6-113225949-2	chr6	113225461	113226461	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11882.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	3.17054286911141	3.20644680882242	3.14020937049599	3.1603262544655	3.42301283269688	3.54271361916947	0.839480016673029	0.185837655291561	0.570175160932842
Merged-chr16-55733982-4	chr16	55733454	55734454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88184.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.07774132017693	6.13846800000103	5.63725667443214	5.4733105627738	5.359551712404	5.09942173203234	-1.20316642986709	0.000670649194686379	0.0132486652876221
Merged-chr10-88682232-7	chr10	88681781	88682781	+	986.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 1 of 5)	B1_Mus1|SINE|Alu	742.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	8.21491906897556	8.25679737824624	7.86368305992851	8.28623722164421	8.64527681250607	7.89422265565945	0.269849321503832	0.326834259736588	0.719183905339082
Merged-chr13-113471008-3	chr13	113470515	113471515	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	31829.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.40471038634124	4.55664001013517	4.37047425379694	4.12895005479234	4.15548513133094	4.67535068551847	-0.303361033877792	0.526984510806233	0.849710825989052
Merged-chr2-22822488-4	chr2	22821993	22822993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48166.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.33827868022643	5.10617719260875	4.91755446737761	4.68667737824928	4.70642192085116	4.87018589902613	-0.856210375856427	0.029481790599618	0.206557002204535
Merged-chr19-56726521-8	chr19	56726062	56727062	+	878.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4190.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.84673476807718	6.91787519840667	6.85756422617592	7.05008649283683	7.30073383445077	7.01526457262301	0.39783933558204	0.109152401116856	0.441469547082649
Merged-chr12-17681984-2	chr12	17681484	17682484	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8825.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.27135603002606	6.00206027701518	6.37099149512438	6.36476043721034	6.3632644915262	6.2563739234888	0.194105312608805	0.498256353076394	0.833856267944725
Merged-chr1-165617374-4	chr1	165616853	165617853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17188.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	8.0977835337052	8.10727009321366	7.79310215128914	7.94449718783341	8.16142264122154	7.72379421286232	-0.0699285272611104	0.773338680652131	0.944067559391607
Merged-chr1-39907321-2	chr1	39906821	39907821	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	6408.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	2.34162126769805	2.19599115955547	2.50550445764799	2.44229525543419	2.42244109315911	2.70030262351424	1.0910297703328	0.200189749299351	1
Merged-chr3-14881196-1	chr3	14880696	14881696	+	564.0	f0_balb.idr	Intergenic	Intergenic	-5073.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	3.79781789036133	3.31621806503159	3.6740670996737	3.74466648464214	3.41273556088765	3.63992229196477	-0.0282530855274152	0.96274623213962	0.990971925132654
Merged-chr7-116443485-4	chr7	116442994	116443994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-36.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	7.22948502652305	7.44545059462928	7.46122185797832	7.3103664182021	7.35521703662787	7.46799924636132	-0.00577231507141073	0.980296314024481	0.995500659055379
Merged-chr17-65740507-4	chr17	65740012	65741012	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	32240.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.05266932957024	5.5910139219008	5.78784833570057	5.8622616488043	5.8470365386186	5.84962951470674	0.0458879990857812	0.886426143793783	0.973794308941933
Merged-chr3-115716424-4	chr3	115715926	115716926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	3.22488253889859	3.1699914681037	3.33101172514845	3.16596170513216	3.15379391228112	3.29220606949879	-0.16057239488495	0.797025799182888	0.951613876948382
Merged-chr7-89216426-4	chr7	89215949	89216949	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	L1_Rod|LINE|L1	122338.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	7.34033190746197	7.54087540084018	7.26338152487024	7.19574076054041	7.5177676574688	7.30917245975005	-0.0568081805492018	0.817681924593239	0.956767881392089
Merged-chr6-122824674-4	chr6	122824192	122825192	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	4508.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	3.27891045694734	3.36818153502307	3.32136907911758	3.40129876396288	3.3882474471681	3.80271650279468	0.797374362044718	0.19213204774786	0.579131441007207
Merged-chr5-123025434-4	chr5	123024932	123025932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	10358.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	6.45693618941614	6.48332431780426	6.66256099561806	6.34640105771115	6.7465211188556	6.50364535298427	0.0316694914570153	0.909932079050488	0.979696874490038
Merged-chr6-129200178-4	chr6	129199653	129200653	+	850.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	19538.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	5.79532758889109	6.0163054462899	6.01949655120556	5.44282156341144	5.30300298303115	5.88085616803851	-0.722407071187204	0.0357640923032173	0.232435134274611
Merged-chr11-69982001-2	chr11	69981501	69982501	+	692.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018740)	promoter-TSS (NM_018740)	-766.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	5.37230131384503	5.37234025316334	5.75714466900069	5.75662675991205	5.84476050835837	5.88988197394842	0.612726098291182	0.0619949893040745	0.323325005641552
Merged-chr2-116980005-4	chr2	116979442	116980442	+	929.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79790.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.64550697389742	4.51388668454956	5.1018418507053	4.75088891812188	4.96252140666153	5.1340139249258	0.422854695504295	0.325913859098836	0.718355550525706
Merged-chr2-26091556-2	chr2	26091056	26092056	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026495, intron 1 of 5)	CpG	840.0	NM_001037098	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	2.64458744061485	2.66249198849091	2.79792403795531	2.32267350949897	2.31076236892137	3.03760669991922	-0.326904922863225	0.834065879392913	0.961205419413942
Merged-chr3-109169302-4	chr3	109168786	109169786	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172685)	TTS (NM_172685)	46137.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	2.86763474976818	2.84458751170158	2.86863143268047	2.73553395170847	2.49089529022672	2.94130328387586	-0.679019209972145	0.379474093107712	0.761896589033286
Merged-chr5-145140118-4	chr5	145139673	145140673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	-84.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	7.98859155461603	8.09805700426055	7.75530266229367	8.03978112450463	8.00958467511663	7.55115798964479	-0.0948769704596483	0.706452084919818	0.922961030664765
Merged-chr6-50384553-4	chr6	50384063	50385063	+	866.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	ORR1E|LTR|ERVL-MaLR	-1726.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	2.59447858893699	2.80373181284535	2.70284119992684	2.74169322015608	2.76758596636485	2.83767842451643	0.404410947214529	0.582174379171371	0.873592284036202
Merged-chr16-92822276-3	chr16	92821767	92822767	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	3807.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.80566957711172	4.64469673063628	4.36542533573369	4.28118190016228	4.40394580990264	4.56467563772298	-0.522438116514679	0.242720710110902	0.639856157348047
Merged-chr7-80177636-3	chr7	80177144	80178144	+	847.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9197.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	2.77780187767398	3.00069496502135	3.18015867313711	3.06119432062972	3.03735338825651	3.13982217260871	0.395637677663851	0.566508745589583	0.867417325194008
Merged-chr8-46888751-4	chr8	46888208	46889208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98179.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.88712963878532	6.79726460062487	6.8285061988227	6.7484540791566	7.33494376039242	6.93077169888122	0.308608678958611	0.269170637756324	0.66629407200667
Merged-chr11-103436487-4	chr11	103435992	103436992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23828.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	3.39955818013545	3.23175437632731	3.26005826968021	3.52647564757512	3.21788660328093	3.4458934338539	0.383371370418757	0.534824361372307	0.853176101630884
Merged-chr9-63738220-4	chr9	63737711	63738711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	19783.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	6.4624363819686	5.90482356480073	5.99958002291444	6.01428938768692	5.78483396149081	5.70162581626801	-0.535817022208904	0.108652633461544	0.440390098157153
Merged-chr5-105699941-4	chr5	105699443	105700443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-26.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	8.50008614287838	8.32766930539967	7.97513285312794	8.28539983939856	7.96864593871703	7.93598891577347	-0.305288487635883	0.222101738761642	0.617038101491437
Merged-chr11-51921921-4	chr11	51921427	51922427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-45704.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	8.25558142408237	8.32882843864407	8.09433803657329	7.98418744544051	8.403633019852	8.12213801598392	-0.0642315900887895	0.782215087691976	0.946479459866999
Merged-chr10-41598465-2	chr10	41597965	41598965	+	788.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 30 of 48)	exon (NM_001358562, exon 30 of 48)	30449.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	2.79828914657672	3.10696540815434	2.83448817613489	3.20774062986381	3.01238744440221	3.43027269971943	1.31821063512247	0.0701645147614426	0.346915975059131
Merged-chr5-101999240-4	chr5	101998770	101999770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70651.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.33364021279936	7.33392854937236	7.13640889867696	7.07343929904943	7.16227008880145	6.77762160118719	-0.376288660781049	0.138256458332834	0.496960021384664
Merged-chr15-35918145-2	chr15	35917645	35918645	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20101.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	2.74823786533605	2.89091273734263	3.13944324314726	2.73382843727217	2.66097783279876	2.93193729436199	-0.781113801273133	0.292755000877311	0.689885476081214
Merged-chr6-134035254-4	chr6	134034762	134035762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007961)	promoter-TSS (NM_007961)	-438.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.89008149841711	9.06995436012463	8.72129247211501	8.69773327845965	8.90956385413266	8.51984931040259	-0.248334921765934	0.272610812469109	0.669897536514858
Merged-chr8-116967364-2	chr8	116966864	116967864	+	679.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	11289.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	4.77982315237207	4.97922597494699	4.94148381561114	4.8409407880239	5.31537085180216	4.64627536619617	0.177736142609559	0.678120970723048	0.913351670094672
Merged-chr11-52003727-4	chr11	52003238	52004238	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	-483.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	8.54288974062944	8.76355049459277	8.35783855268865	8.77360032280462	9.1041699356816	8.58621230001087	0.383495067517702	0.118148798342871	0.459156615067228
Merged-chr5-125293655-2	chr5	125293155	125294155	+	879.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 7 of 10)	MLT1D|LTR|ERVL-MaLR	47439.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.63047954837847	3.39996501129942	3.93820653994161	3.59265820806232	3.48434702189062	3.77411155991414	-0.170399671134017	0.773338977837832	0.944067559391607
Merged-chr2-131212378-2	chr2	131211878	131212878	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355593, intron 2 of 2)	intron (NM_001355593, intron 2 of 2)	2018.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	3.58348943617662	3.41884196527675	3.46362498898592	3.46588511965692	3.29800506917197	3.53442170438157	-0.231476567476387	0.693793537805169	0.919049458618979
Merged-chr17-35257595-4	chr17	35257097	35258097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5497.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	8.50116425001835	8.67805724198173	8.1177489683686	8.23794691387331	8.68474599194408	7.57054826366384	-0.280906684806898	0.388813276356747	0.768720598277151
Merged-chr8-85560127-4	chr8	85559639	85560639	+	853.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4868.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	4.59157213470603	4.56674774043881	4.81358728779465	5.21692735824291	5.35740890439651	5.19589081083057	1.34147952524612	0.000417576606108163	0.00910527102752831
Merged-chr2-18681112-4	chr2	18680590	18681590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007552, intron 1 of 9)	CpG	4072.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	2.72255725852567	2.16740471037034	2.23148420978084	2.44385169600457	2.47686430139259	2.57874862958742	0.578736670097515	0.547574016608503	1
Merged-chr7-80370812-4	chr7	80370336	80371336	+	946.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172903, exon 2 of 24)	5' UTR (NM_172903, exon 2 of 24)	539.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	6.2917553962178	6.09191056182831	6.55873388110505	6.74148159197975	6.63948449026421	6.03195707230862	0.319862277188599	0.330933905970441	0.722226411767471
Merged-chr8-88263097-3	chr8	88262590	88263590	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9313.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.15721189533951	3.12666540366518	2.92625422214392	3.01938319900023	2.87120693634163	3.45035814446434	0.240716253531716	0.737544243320729	0.933775317218453
Merged-chr3-96556005-2	chr3	96555505	96556505	+	632.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040409, exon 4 of 4)	non-coding (NR_040409, exon 4 of 4)	-1952.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	3.75659918049532	3.79571894201796	3.70612905582655	3.68307516911207	3.48959890497191	3.82645566002989	-0.307998224458698	0.575174005010363	0.87094931637326
Merged-chr19-59026002-8	chr19	59025607	59026607	+	868.0520630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	49962.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	6.20210003845379	6.26836194258571	5.79435266495741	6.34367292346879	6.7148203552932	6.15946037764526	0.534011240244187	0.101069817484758	0.423988776066131
Merged-chr7-83631226-2	chr7	83630726	83631726	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-791.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	5.13091088935943	5.09489695041429	5.00336926518553	5.19482817169543	5.28512104964327	5.17330995949677	0.29174207016832	0.411613028698963	0.784010458784097
Merged-chr6-126849136-4	chr6	126848653	126849653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025358)	promoter-TSS (NM_025358)	-9.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	6.04396044458354	6.02057787991197	5.87092050086069	6.18488699028288	6.20448931796342	5.7165203509412	0.141796893711942	0.652884573048161	0.903027303548785
Merged-chr1-132343831-4	chr1	132343334	132344334	+	880.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24114.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.561880982345	4.39650419920903	4.58274419330164	4.80881319049232	4.23475993405896	4.14590979939546	-0.194032727820689	0.690788788189133	0.917977377427794
Merged-chr15-84987378-5	chr15	84986885	84987885	+	960.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	586.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	7.24959528109379	7.7037418951445	7.18462625719504	7.56417979199023	7.45082856788056	7.31486724772412	0.0593139830768963	0.822693818056003	0.958135961464233
Merged-chr4-119238896-2	chr4	119238396	119239396	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5067.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	3.80418785582588	3.75385464869214	3.88009458211087	3.58807128116478	3.48380865539388	3.94820020215808	-0.444531405051557	0.427758643265885	0.794644932885352
Merged-chr11-118230150-4	chr11	118229645	118230645	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17403.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.20700482902733	6.85495385973763	6.93895585120949	6.77826685490238	6.71026160699931	6.55329240868878	-0.500220780119616	0.0585620390316851	0.312958004902023
Merged-chr5-105531157-3	chr5	105530663	105531663	+	781.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	11692.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.12375593582599	4.86264417139779	4.9525955575107	4.10217890832815	3.76391587738595	4.09614095684399	-2.70229585940053	2.81395634877269e-08	2.32285396695117e-06
Merged-chr3-31414138-4	chr3	31413726	31414726	+	962.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103907.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.02968808937788	5.11631504822645	4.63048732723475	5.38293590751939	4.96993584043191	4.91145425317427	0.326805031811315	0.434752328839909	0.798632090721892
Merged-chr11-52397710-4	chr11	52397326	52398326	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153117, intron 1 of 2)	B3A|SINE|B2	1398.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	5.52243849618227	5.43035053487801	5.49438866944868	5.61980107173936	5.64011213632972	5.37447421712145	0.148333110992214	0.652473405593019	0.902986290245403
Merged-chr19-37602442-5	chr19	37601984	37602984	+	783.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	52066.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.1202011901572	4.53335028655442	4.37298903386697	4.04936031000164	4.08662780914332	4.02409042866549	-0.827966447778596	0.0880312045288896	0.393677438925061
Merged-chr1-152542777-2	chr1	152542277	152543277	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	82440.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.00431882374264	4.8822999727179	4.93011641789928	4.79506023798334	4.1297768121429	5.27571108389	-0.269849485005366	0.595870817661672	0.879742965115467
Merged-chr7-97069813-2	chr7	97069313	97070313	+	775.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11938.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.38446092021283	3.57302514249317	3.33283644172847	3.43138380642571	3.30189321366277	3.1623455326803	-0.512215427361683	0.410210562600033	0.783116615634315
Merged-chr19-28679149-2	chr19	28678649	28679649	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	925.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.05913339795559	3.30944891282062	3.04194690741602	2.95046845405048	2.72080025510592	2.93113158087272	-1.34942360632917	0.0597939467342689	0.316577673699736
Merged-chr3-38483698-2	chr3	38483198	38484198	+	698.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167883, exon 2 of 4)	5' UTR (NM_001167883, exon 2 of 4)	1118.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	2.76058064828153	2.78051907054288	2.95127690633091	2.71032231222301	2.69758202854074	3.02279092256339	-0.0878804559208256	0.904377744092607	0.978131323042371
Merged-chr14-54754128-4	chr14	54753638	54754638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27748.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	7.37529236207421	7.44132650473548	7.41596076119592	7.69927517224945	7.96244866533091	7.20195691511597	0.378787469436183	0.168200063458244	0.54461790334787
Merged-chr11-120783797-2	chr11	120783297	120784297	+	775.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346709)	promoter-TSS (NM_001346709)	407.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.88719130161124	4.66036465404822	4.98189166045824	4.78968672963341	4.20051007483538	4.37847234592777	-0.868322239784383	0.0591813758846825	0.315018163038169
Merged-chr6-128143168-2	chr6	128142668	128143668	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	410.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	4.61255068783839	4.70359632557058	4.69288745684789	5.05895901027225	4.83838272648995	5.01609500066236	0.684321833598704	0.0812451764321461	0.377143156371253
Merged-chr6-97421877-3	chr6	97421385	97422385	+	920.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 3 of 23)	intron (NM_145148, intron 3 of 23)	37401.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.51347859189872	5.63521925820425	5.96899813407902	5.90645694686538	5.69375434814306	6.4567713814605	0.596028619439073	0.104984641667469	0.432306361005943
Merged-chr11-83224927-3	chr11	83224426	83225426	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015519, intron 3 of 3)	RMER17C|LTR|ERVK	1350.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	7.92950466323315	8.44067084757773	7.78196197467962	7.7161902620848	8.1717152149476	7.58214940913252	-0.329319708546183	0.260307631232834	0.657729111767686
Merged-chr5-140649148-4	chr5	140648645	140649645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175274)	promoter-TSS (NM_175274)	-114.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	6.57454672093407	6.43881289987585	6.6161820653007	6.79055265780706	6.62394982154479	6.40671447066905	0.130999950670908	0.630165060649871	0.894623438715505
Merged-chr18-62726791-3	chr18	62726291	62727291	+	827.027771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	14596.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	3.1942935073943	2.91808112372404	3.03202126482983	3.32745399958129	3.30858038156827	3.55380913188086	1.43743080342558	0.0307030066337687	0.211853037232161
Merged-chr13-49208049-2	chr13	49207549	49208549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026738, exon 2 of 6)	exon (NM_026738, exon 2 of 6)	7977.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	3.14958083550135	2.88934653070762	3.16513894212601	3.10047123059988	3.07499200337511	3.12203895342664	0.121850917613775	0.854495765441979	0.965987623019113
Merged-chr11-75532585-3	chr11	75532096	75533096	+	829.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173388, exon 2 of 14)	5' UTR (NM_173388, exon 2 of 14)	484.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	6.90611169982875	6.92605749719704	7.0540075429821	7.01086020290049	7.11778777143881	6.84784217343894	0.0700793874617811	0.777308119315399	0.945082310229414
Merged-chr2-167359882-2	chr2	167359382	167360382	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-10704.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.12149932057847	3.52914698956124	3.27662719010603	3.81944476490489	3.46655809310843	3.46928462949389	1.0010692149684	0.118732550653682	0.460561189445322
Merged-chr16-55838845-4	chr16	55838371	55839371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-230.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	8.64313386134579	8.87516815177826	8.41008989790602	8.52463099326204	8.76059705793981	8.13789310210146	-0.212711263778183	0.413088425322164	0.784770288990094
Merged-chr15-64235080-2	chr15	64234580	64235580	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	77593.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.25804473203785	6.40045273791612	6.34963869512959	6.66859294825498	6.83016522076687	6.42913797486179	0.526781709163246	0.0566731014929518	0.306887596190666
Merged-chr5-107522142-1	chr5	107521642	107522642	+	599.0	f0_balb.idr	Intergenic	MER57C2|LTR|ERV1	-12569.0	NM_182745	76421.0	Mm.67037	NM_175241	ENSMUSG00000089798	1700028K03Rik	-	RIKEN cDNA 1700028K03 gene	protein-coding	2.45431031944377	2.44612279487409	2.56878105474529	2.39467823602806	2.17563528939149	2.58109183739467	-0.622678697757655	0.469582561394763	1
Merged-chr17-35860737-2	chr17	35860212	35861212	+	558.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134122)	promoter-TSS (NM_134122)	-606.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	5.59081867873755	5.67463990198228	5.41887475112211	5.38356634297648	5.49715698756713	5.32378946799424	-0.311376577201917	0.351227960970023	0.739086949987195
Merged-chr4-132074215-3	chr4	132073729	132074729	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128607, intron 1 of 17)	intron (NM_001128607, intron 1 of 17)	1084.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.01123256846007	6.06563543454861	5.42314334449217	5.38897995320066	5.50350025062168	5.63773701386839	-0.674368408064654	0.0568664897832539	0.307475916686269
Merged-chr8-104376223-2	chr8	104375723	104376723	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	ID_B1|SINE|B4	19584.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.93157597184218	6.1676353442015	5.93777150295317	5.95474180275039	6.12095644782199	6.15538774418778	0.0965992807976131	0.744517383896688	0.936009707324554
Merged-chr16-25061090-1	chr16	25060590	25061590	+	549.0	f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	B1_Mus1|SINE|Alu	1451.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.70299948151463	3.86385871381927	3.84380402666056	3.54732276751423	3.1514210859613	3.66391086842073	-1.21105323722719	0.0493322817981461	0.282313652259982
Merged-chr11-117344562-3	chr11	117344067	117345067	+	975.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	12254.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.20908833438356	3.89007692324967	3.61210668248249	3.62002594091441	3.47697654162778	3.56918818747819	-1.27186112043553	0.0287155403017409	0.203135245729856
Merged-chr9-111119385-4	chr9	111118887	111119887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 1 of 13)	intron (NM_027742, intron 1 of 13)	1276.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	7.34120104951472	7.3003303131547	6.65044381889109	6.89724758564867	6.94018839610639	6.37667009001744	-0.565924614641309	0.0779301708836217	0.368611422948782
Merged-chr17-71704632-1	chr17	71704132	71705132	+	581.0	f1_c57bl6.idr	intron (NM_177087, intron 10 of 19)	intron (NM_177087, intron 10 of 19)	31371.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	2.29313242933799	2.32011842480558	2.43249879816071	2.11080789185027	2.30007195180435	2.24970226084421	-0.836607764507992	0.340224273608955	1
Merged-chr16-35947133-4	chr16	35946626	35947626	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030253, intron 3 of 10)	intron (NM_030253, intron 3 of 10)	-8099.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	4.21319927967111	3.69527327637252	3.83828269452566	4.22846672026725	4.2869326256312	3.9640777331897	0.668938005528711	0.214555144985263	0.607668896284207
Merged-chr10-81268902-2	chr10	81268402	81269402	+	924.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_018758, exon 2 of 11)	exon (NM_018758, exon 2 of 11)	730.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	5.33380050869123	5.65968824433693	5.4013827604592	5.34685882575513	5.54443297121511	5.40346495895995	-0.0743346886542942	0.829027235469978	0.959932344512127
Merged-chr13-23369241-4	chr13	23368700	23369700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172586)	promoter-TSS (NM_172586)	8.0	NM_001286156	218100.0	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding	6.55132431613107	7.23077255665916	7.25677117771965	6.99434787771099	7.14414401188135	6.96932371239406	-0.0139420237348444	0.962739724639873	0.990971925132654
Merged-chr2-132224483-4	chr2	132223981	132224981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23307.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	6.76481278828046	6.28234989486363	6.53947970985708	6.6942753433709	6.71123595283014	6.82142096921377	0.309880753190713	0.268622505334173	0.665858598184161
Merged-chr15-88864035-4	chr15	88863546	88864546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145478, intron 4 of 5)	intron (NM_145478, intron 4 of 5)	1852.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	7.54436970432873	7.11233063683294	7.13694257107315	6.78528461341758	6.69820356693888	6.54582580377385	-0.916884338024458	0.000703752513017593	0.0137235557934922
Merged-chr9-62980005-2	chr9	62979505	62980505	+	829.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	874.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.25376992740406	6.01188976442953	6.23728300488358	6.25028930253944	6.2651226466178	6.33628871850317	0.190634853912455	0.49861832880035	0.833992089521886
Merged-chr14-22102559-4	chr14	22102049	22103049	+	788.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 2 of 6)	BLACKJACK|DNA|hAT-Blackjack	82837.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	4.03796399485649	3.88511772392799	4.15891400388323	4.49411843240046	4.30191118541326	4.7827069614578	1.36831962340506	0.00483360997746862	0.0597970590254548
Merged-chr2-90894431-2	chr2	90893937	90894937	+	888.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026688)	TTS (NM_026688)	8651.0	NM_026161	67445.0	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	2.37564179538141	2.49961564996536	2.60396760617374	2.73640429326512	2.67855284897188	2.86034247318409	1.5425396700085	0.0521151832538628	1
Merged-chr19-26606726-4	chr19	26606242	26607242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 1 of 32)	CpG	1582.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	6.28710516703013	6.31561517801956	6.3424231041422	6.33083449056905	6.12360429427421	6.60933123013346	0.0708999200147527	0.807703367711598	0.954557080558103
Merged-chr3-58416508-4	chr3	58416022	58417022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1802.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	6.71586774779637	6.63194734663652	6.90182720047756	6.68827664089528	6.32004835944335	6.77633722009887	-0.236450657809929	0.402148800354794	0.77787096574423
Merged-chr3-19628222-4	chr3	19627736	19628736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16224.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	8.50027099099438	8.56727885485917	8.29528231798039	8.42255221461266	8.83705585091558	8.08946824814249	0.047042576222061	0.858855077138618	0.96702230262239
Merged-chr7-118118127-4	chr7	118117619	118118619	+	955.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019419)	TTS (NM_019419)	-1972.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	6.75107795026781	6.41352534320488	6.67636162083235	7.01631226476509	7.17470335284848	6.8298007878295	0.626507760271876	0.0200042647609508	0.161415327989643
Merged-chr12-3809939-2	chr12	3809439	3810439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	2779.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.77355052164868	3.9891719018433	4.31327107485445	4.63136425183226	4.47482223554749	4.19872055079938	1.14019554977044	0.0247789166682228	0.186020247943375
Merged-chr3-116485918-2	chr3	116485418	116486418	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	22257.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	3.72488878339152	3.6955557989374	4.22772280143649	4.27531598890314	4.27586630826838	4.41893114901766	1.24473905660272	0.0172725813063338	0.146475432667899
Merged-chr13-94813990-4	chr13	94813519	94814519	+	968.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	25076.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	3.35522773833044	3.16641560934228	3.27185555817173	3.16216266936327	3.2396305013277	3.1083281079416	-0.380112840852582	0.548996508915972	0.860131595139289
Merged-chr1-179760357-2	chr1	179759857	179760857	+	558.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026375, exon 30 of 36)	exon (NM_026375, exon 30 of 36)	43658.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	3.8912730251674	3.68101771468857	3.84991588629388	3.63962925737011	3.38058567260357	3.77133281031296	-0.719617398634109	0.204666464811781	0.595338437555822
Merged-chr2-91517527-2	chr2	91517036	91518036	+	671.333374	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9226.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.36349577687019	4.37255064499466	4.78083996895479	4.33088564596039	4.34640674856896	4.0958515001731	-0.619456197820366	0.191042278901778	0.577583240420725
Merged-chr7-102347555-4	chr7	102347060	102348060	+	966.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	79736.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	3.55459982498671	3.44010227979731	3.6413295129014	3.48799479537387	3.4337329500935	3.38707870788977	-0.38841365314188	0.50180323947088	0.836022696421896
Merged-chr14-32931256-3	chr14	32930691	32931691	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-60191.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	3.34138284403878	3.12451227196201	3.20026292512408	3.1469001193275	3.15904635815435	3.21427765606602	-0.22839728228954	0.71828118719595	0.927293456311605
Merged-chr18-77104475-2	chr18	77103975	77104975	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164170, intron 2 of 12)	intron (NM_001164170, intron 2 of 12)	38795.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	3.07346568365944	2.96103453785273	3.35789258791156	2.89876176705116	2.90326868704884	3.16253473042951	-0.659614982733353	0.342313274053925	0.731283521951228
Merged-chr19-42520036-4	chr19	42519533	42520533	+	842.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177464, intron 1 of 6)	B4|SINE|B4	1228.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	4.00579157440526	4.1844729575486	4.14792397791495	4.31304279025307	4.5367319253712	4.35431827544041	0.803165932833609	0.0825972960952611	0.380172353882868
Merged-chr7-63934669-2	chr7	63934169	63935169	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4246.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.13885966020021	4.58109516690068	5.07094248982101	4.45831839086103	4.51092688487649	4.81417417220738	-0.109899476023319	0.827709299267207	0.959501182426974
Merged-chr12-111344383-2	chr12	111343883	111344883	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 2 of 36)	intron (NM_183016, intron 2 of 36)	33335.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	3.32616691687414	3.06950802765905	3.32520478965002	3.40828843871566	3.35067534173693	3.22359040860675	0.361951301554849	0.564948179853314	0.866552670637515
Merged-chr4-120878343-1	chr4	120877843	120878843	+	847.5	f1_c57bl6.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	23544.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.200089536648	3.11595163125096	3.45948390663593	3.09444406827076	2.99871772827117	3.2664645744622	-0.603161261684561	0.359173247955867	0.745419091011193
Merged-chr13-95848110-3	chr13	95847613	95848613	+	935.511108	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	Lx8|LINE|L1	43809.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.54660505934819	3.59167640693955	3.61874160318521	4.58410114028043	4.26131087494244	4.3931196351902	2.60847280944542	1.60596082567591e-06	8.18302439576492e-05
Merged-chr11-103246523-4	chr11	103246016	103247016	+	951.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	20885.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	5.7091202236206	5.27308739420984	5.59758996164953	5.48968923421457	5.27086664327011	5.65950027492695	-0.124122221577416	0.728541434907219	0.930478966998914
Merged-chr7-19457822-2	chr7	19457322	19458322	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172279, intron 1 of 16)	intron (NM_172279, intron 1 of 16)	672.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	3.88795783707772	3.99594296352584	4.22174254268593	4.44321614463766	4.0815066267962	4.33279068994023	0.717522302402951	0.145516553274132	0.50870395838761
Merged-chr19-3907068-4	chr19	3906569	3907569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	64.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	7.96031592814002	8.21106745202156	7.91133455676999	8.33085564799512	8.59175933001123	8.27345672274951	0.522458570152859	0.0229130808280272	0.176761693819626
Merged-chr1-74713850-7	chr1	74713366	74714366	+	844.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024264, exon 1 of 9)	exon (NM_024264, exon 1 of 9)	331.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	6.85755408589099	7.27104006680586	7.12373349957483	6.96678208265859	7.12949673375233	7.0542136020253	-0.0641189946861042	0.80334460481858	0.953466813267497
Merged-chr11-20249508-4	chr11	20249015	20250015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172260)	promoter-TSS (NM_172260)	-91.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	6.65078663656062	6.60424646599653	6.58738674704492	6.60036263217926	6.29464277157162	6.52621374225193	-0.22813824456891	0.395195501790411	0.772579826044138
Merged-chr18-77714038-4	chr18	77713523	77714523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	-13.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	7.60282661299996	7.48964906636514	7.42858201558313	7.22386899753446	6.86455901782085	7.25595152527609	-0.584490232643394	0.0193304177284682	0.157891960179678
Merged-chr8-83425458-4	chr8	83424956	83425956	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009904, intron 13 of 14)	intron (NM_009904, intron 13 of 14)	17206.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	3.31637802931012	2.90371855286316	3.27916929051894	2.96613666817169	2.72886100398051	2.94753107606576	-1.39610840186159	0.0558591912092155	0.30432055628291
Merged-chr1-80659651-4	chr1	80659161	80660161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5691.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.01074534332339	6.19340160452512	6.3042600015955	6.16705540424618	6.32536833173289	6.4724179104211	0.257854688131412	0.372046395971422	0.755997445123458
Merged-chr7-99381414-4	chr7	99380947	99381947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-71.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	7.79540613923092	7.72507485236518	7.69359460855341	7.57901428730066	7.86980472814859	7.6307017465327	-0.0497475077790312	0.826781056451805	0.959278302444461
Merged-chr7-75610696-3	chr7	75610214	75611214	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	155180.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.36130110093198	5.27302785066765	4.77080132313338	4.10222323748091	3.58311488734081	3.90674238377846	-3.61918920251292	1.113203515902e-10	1.48203901041878e-08
Merged-chr7-5061402-7	chr7	5060888	5061888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133671)	promoter-TSS (NM_133671)	-755.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	8.10557516379956	8.31078176926369	8.17241326978549	8.1662765729671	8.47008927514652	8.30455482613982	0.171565708923437	0.433550787527659	0.797815674529737
Merged-chr10-13501920-2	chr10	13501420	13502420	+	986.9166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 1 of 6)	ORR1A2|LTR|ERVL-MaLR	892.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	5.98673447279092	5.77070734470655	5.70200907889189	5.70348528364185	5.29215426747759	5.47997185692493	-0.614193852746776	0.0682679324168776	0.341765400583571
Merged-chr11-4661587-4	chr11	4661109	4662109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	23816.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	6.02716409495043	6.22616310198521	6.04758291262599	5.97089388392921	6.18617471920509	6.0402416347038	-0.0557968256857975	0.848771075400379	0.964368239368528
Merged-chr8-35466895-3	chr8	35466373	35467373	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28660.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	6.30761712307971	6.32556114793561	5.79040253069154	4.46018776764036	4.76864894282165	4.584991823661	-3.13049395398439	1.22522153341937e-13	2.76282475210729e-11
Merged-chr2-62645612-4	chr2	62645117	62646117	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027835, exon 1 of 16)	exon (NM_027835, exon 1 of 16)	638.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	7.86865582941431	8.1094265835815	7.66359773517112	7.84619855346931	8.2797376025255	7.81938835074492	0.153133050453727	0.555682762835177	0.86332697341212
Merged-chr9-88439057-4	chr9	88438560	88439560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172926)	promoter-TSS (NM_172926)	-109.0	NM_172926	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	7.4175107189528	7.50732269840644	7.38774565211374	7.35890205442661	7.28393971159925	7.45529487422845	-0.11494147651424	0.613127401341248	0.887038022234631
Merged-chr1-152898958-2	chr1	152898458	152899458	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	3687.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	2.23783966102082	2.38922080867861	2.34671318942329	2.4181447695185	2.31257522185716	2.73073688163972	1.04219449951625	0.222583927833679	1
Merged-chr3-107134646-4	chr3	107134160	107135160	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	33093.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	5.32731819069418	5.20161599690386	5.31990098780207	6.18903755286962	6.17347435107941	5.41953893496547	1.29792909465386	0.000424651314182721	0.00923292044695997
Merged-chr12-69724900-4	chr12	69724374	69725374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145443)	promoter-TSS (NM_145443)	0.0	NM_145443	217666.0	Mm.103362	NM_145443	ENSMUSG00000020988	L2hgdh	BC016226	L-2-hydroxyglutarate dehydrogenase	protein-coding	6.61471248238959	6.91378655436004	6.35661938503944	6.60397699113926	6.6066434630629	6.22484160431452	-0.253848865572784	0.401874487603003	0.777823507457637
Merged-chr11-120457193-4	chr11	120456754	120457754	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152807)	promoter-TSS (NM_152807)	816.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	6.90313553828148	6.86866638052754	7.000566832908	6.49647987488076	6.89423282850395	7.03275437848452	-0.150989097587925	0.580775055587303	0.873051214505497
Merged-chr16-43377056-3	chr16	43376548	43377548	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	43148.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.50804739769521	3.33825972752845	3.28659241180877	3.50403766257541	3.343356357538	3.78226598594666	0.601068084375827	0.326920756463777	0.719241223231483
Merged-chr19-46507990-2	chr19	46507490	46508490	+	795.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	6342.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.47765005972908	5.4484092455934	5.72626342443274	5.76688348491004	5.54771398281908	5.36238463690869	0.0529054664772745	0.876579980351889	0.971344419120637
Merged-chr2-4919494-3	chr2	4919044	4920044	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	548.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	7.93912496466848	8.2874131354049	7.91521032098381	7.39478812101214	7.50054714053761	7.07708754754731	-1.0334972758049	5.51378060489197e-05	0.00171126690254327
Merged-chr14-119007542-4	chr14	119007017	119008017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081252, intron 33 of 38)	ORR1D2|LTR|ERVL-MaLR	69585.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	6.3167139991107	6.50893150677223	6.22889503345194	6.3113380985875	6.31039744861515	6.40737085109822	-0.0397264248557112	0.885716733788907	0.973636976161493
Merged-chr9-114782490-2	chr9	114782025	114783025	+	573.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133978)	promoter-TSS (NM_133978)	-532.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.71030341718847	6.13979293067551	6.33466751670486	6.39955674261778	6.56350086500624	6.48431827297984	0.677089746650516	0.0293749064917353	0.206076237997361
Merged-chr19-45149974-3	chr19	45149510	45150510	+	826.544434	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021901)	promoter-TSS (NM_021901)	-705.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	2.49222822602068	2.69654077159899	2.61198736760515	2.76204179339611	2.83714717293334	2.8725452752825	1.19400637744214	0.116284170345859	0.455244812559434
Merged-chr11-113683016-2	chr11	113682516	113683516	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138598, intron 1 of 2)	intron (NM_138598, intron 1 of 2)	1135.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	4.21402205288308	3.94204548231483	4.69773149247506	4.30437959727033	3.85439275081957	4.43164022540773	-0.267908863220327	0.626659619077813	0.892916235446326
Merged-chr14-52198955-2	chr14	52198455	52199455	+	705.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201637, exon 37 of 37)	exon (NM_201637, exon 37 of 37)	-1716.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	2.86277415785611	2.86105349420468	3.06154773232153	3.34538073332129	3.11043657224487	3.35994314726814	1.57881240188068	0.0206398393707957	0.164786005983992
Merged-chr13-47042754-1	chr13	47042254	47043254	+	771.0	f1_balb.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	463.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	4.55786225268592	4.80153091286303	5.02508930514611	5.13690574096396	4.99022853996897	4.79875017891167	0.418122679883276	0.30586331041436	0.701955607837911
Merged-chr5-120777707-4	chr5	120777216	120778216	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145226)	promoter-TSS (NM_145226)	-57.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	6.09622666165603	6.35144211293285	5.96665484329997	6.24888808124149	6.40244581628856	5.9015128243148	0.0964537421292142	0.760156970339386	0.940635325431638
Merged-chr16-15563159-2	chr16	15562659	15563659	+	799.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159351, intron 2 of 2)	Lx4B|LINE|L1	31359.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	2.74718989141839	2.60492858427892	2.95761753087727	2.80189839569898	2.59256632620241	2.85580378607091	-0.113541759391557	0.88045867525106	0.972540920690587
Merged-chr11-118185901-2	chr11	118185401	118186401	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 3 of 12)	intron (NM_001112700, intron 3 of 12)	26841.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.56710758508388	4.36695167047938	4.21939346272778	4.5080753812217	4.39287968661839	4.55588747040918	0.20666863328002	0.643436702282901	0.899801366759477
Merged-chr14-66184334-2	chr14	66183834	66184834	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	L1MC1|LINE|L1	29490.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.86808623205735	5.199026762381	5.03295896213217	5.91522356837784	5.71908501963391	5.31375558594512	1.24753320416621	0.000923941095124644	0.0169261696843373
Merged-chr15-83128200-4	chr15	83127697	83128697	+	975.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-5396.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	5.86768424955833	5.7144308953632	5.49006420441033	5.68014156186565	5.85632700645585	5.46003598512753	-0.0379381377224137	0.910505152226783	0.979856358918468
Merged-chr8-73352780-5	chr8	73352326	73353326	+	881.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010687, exon 1 of 15)	5' UTR (NM_010687, exon 1 of 15)	714.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.34012447438443	5.37332974465833	4.9704482138944	5.1351373445292	5.07857323266854	5.03666862516498	-0.344544799485658	0.352268764823617	0.739892452126502
Merged-chr10-62558007-3	chr10	62557538	62558538	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028197)	TTS (NM_028197)	20419.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	3.4995018862528	3.21944256476465	3.33949779433879	3.23376236526064	3.23391108572153	3.71820168204918	0.187451704414409	0.770943465096077	0.943542055208477
Merged-chr6-72107149-4	chr6	72106650	72107650	+	905.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	9542.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.85298411622614	6.23560358950604	6.25683226794268	6.16736837777884	6.31219944109747	6.25747414452256	0.210831522649322	0.480279941988666	0.824537487093219
Merged-chr5-122269386-4	chr5	122268896	122269896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4936.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	5.55864700850076	5.4567357323556	5.77890683984277	6.33217136064928	6.16240455083624	5.91626363406861	0.994079356858787	0.00173773120537496	0.027738248780676
Merged-chr1-166380647-2	chr1	166380147	166381147	+	631.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	1480.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	3.97511083765751	4.04388692380641	3.78957699247296	3.9668580621065	4.0639907336236	3.96515970567608	0.163489776390228	0.745604894973188	0.936245259200619
Merged-chr7-74693248-3	chr7	74692715	74693715	+	727.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-138435.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.13865878155498	3.05779283409754	3.10551461605084	3.37261391374097	3.15864382737147	3.56174885596051	1.10316931479092	0.0887922864485092	0.3956425281572
Merged-chr1-162625505-4	chr1	162624957	162625957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13693.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	7.03851184739248	7.21448982732952	7.02272166393026	6.55157604502619	6.58613402497009	6.52674366690819	-0.840366537251735	0.000787588111423593	0.0150031207818989
Merged-chr2-73206169-3	chr2	73205671	73206671	+	816.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030091, intron 2 of 7)	intron (NM_030091, intron 2 of 7)	8276.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	3.31640830630494	3.17565448180772	3.34490197870088	3.46338397393384	3.19051181594408	3.36052865170486	0.244835444565487	0.692124580378711	0.918590542007936
Merged-chr6-72144816-3	chr6	72144298	72145298	+	756.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21601.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.06485907638097	4.03179934309421	4.46207876895083	3.91840382312024	3.87809029562129	4.2962046747607	-0.460242765868277	0.377643295372243	0.760017978506074
Merged-chr2-19059487-4	chr2	19058986	19059986	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	61167.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	3.38241003129103	3.26991892415621	3.11723738013564	3.24255379573191	3.39931582803811	3.53087116124414	0.497724072169474	0.428805706098919	0.795506670674191
Merged-chr12-36035809-3	chr12	36035290	36036290	+	851.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	6688.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	5.46647868663464	5.59613939548329	5.41355587564469	4.51235778619622	4.38217483107823	4.58722063449851	-2.2541209346219	8.70062136152622e-09	7.99957240055109e-07
Merged-chr12-80815609-4	chr12	80815079	80816079	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25047.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.32331182173325	5.60296352208386	5.8698402918974	6.17237991275652	5.96899855544759	6.09517095660531	0.181496805937216	0.597796393641697	0.880469749736855
Merged-chr10-77606135-4	chr10	77605633	77606633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	36.0	NM_019929	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	7.99633588907348	8.01808579039361	7.81375560461075	7.88214152618122	7.96752078049433	7.7486382066361	-0.108532208799226	0.622096244905728	0.890937721901588
Merged-chr3-95904731-2	chr3	95904231	95905231	+	662.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011797)	promoter-TSS (NM_011797)	-46.0	NM_001355750	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	2.16521855694872	2.20916626386209	2.29414543622385	2.30092165561004	2.13877682691533	2.49485740782497	0.625166500289876	0.473488531330071	1
Merged-chr9-67845906-3	chr9	67845463	67846463	+	857.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	5567.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	5.04383059547358	5.06016447191749	5.24393790858895	4.59577343702123	4.5963354761673	5.12434516362137	-0.730956283317296	0.0770132014938485	0.365775057391982
Merged-chr7-80640001-4	chr7	80639498	80640498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	3981.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	6.79813019101196	6.62287402629494	6.5985788569216	6.49680742386441	6.86528948316746	6.29548745173502	-0.139622843535114	0.634075531062637	0.89626032902407
Merged-chr3-109045726-4	chr3	109045208	109046208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18101.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.3674977773831	4.36735338335214	4.04577444814771	4.25170527546597	4.10294440303036	4.39525325445257	-0.0837981844972811	0.860651153798792	0.967588655430938
Merged-chr5-99242143-2	chr5	99241643	99242643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10784.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.8531154046333	5.9145542185068	5.92063140553931	5.9908071646356	6.0795341534334	5.98179225306509	0.221871518547887	0.445677258338222	0.805296706011004
Merged-chr13-58217774-4	chr13	58217266	58218266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2113.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	5.26204035583512	5.23861417630694	5.67698398046437	5.30706155648142	5.43871188487981	5.80890330363761	0.250375633419922	0.499454612829939	0.834491521655083
Merged-chr9-118648621-2	chr9	118648121	118649121	+	832.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	41912.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.18913618984754	6.03296368234235	6.44671955854207	5.65426267130885	6.00016221686432	6.42129704405705	-0.291542121373075	0.398026026633923	0.774770052576157
Merged-chr17-26512975-1	chr17	26512475	26513475	+	691.0	f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4503.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.74834365306958	6.06148382370123	5.91408314176905	5.21915265594573	5.25800414826449	5.4551967333336	-1.14222115766137	0.000564280152548388	0.0115447806573018
Merged-chr16-11012085-4	chr16	11011515	11012515	+	907.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	3117.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	4.07244915776275	4.09530821215471	4.09751505575052	4.05378921540332	4.16167526246613	3.80744532301538	-0.17633653756083	0.724621845817053	0.929435720851808
Merged-chr2-3425108-3	chr2	3424610	3425610	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	979.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	6.86626533651285	6.67942664594216	6.52366870514358	6.98013715760903	6.96339248224037	6.63711292149063	0.269082314968238	0.321744644253667	0.715190563381485
Merged-chr12-4082838-4	chr12	4082267	4083267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153082, exon 1 of 7)	5' UTR (NM_153082, exon 1 of 7)	193.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	7.41103250001719	7.60030264774098	7.27029175848734	7.31817564871751	7.41776241488136	7.26858770533799	-0.14882300251539	0.532702293175568	0.851971173271146
Merged-chr15-38655392-4	chr15	38654909	38655909	+	841.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6495.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	2.37936706987604	2.55354101480079	2.22879395922652	2.48392675707264	2.36565154143073	2.57120457002918	0.463383644601702	0.591711425756384	1
Merged-chr1-39846819-2	chr1	39846319	39847319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040465, intron 1 of 4)	intron (NR_040465, intron 1 of 4)	511.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	4.26993983898764	3.6048684527964	4.07294186305748	4.17022043298546	3.77434952094263	3.78793767435945	-0.262301889437558	0.650356646158568	0.902576889668442
Merged-chr5-144252341-4	chr5	144251833	144252833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	-2892.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	4.44607990654397	4.24963707374591	4.18224126823682	4.29949466040928	4.03744457749045	4.20373141164744	-0.339189833509576	0.472663650293471	0.820550293768681
Merged-chr13-81782416-2	chr13	81781916	81782916	+	947.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-831.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	5.59226364559532	5.6793382353927	5.34313021915925	5.69693218528033	5.86213882494119	5.67806878720831	0.362741313716189	0.268128731962242	0.665268831378645
Merged-chr4-62667807-4	chr4	62667289	62668289	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	L2|LINE|L2	-6185.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.7954972793563	3.61974751745322	4.07490598753872	4.01058069686913	3.66737202605309	4.1421793506513	0.346400782830675	0.53456593404191	0.853068627162717
Merged-chr3-116652254-1	chr3	116651754	116652754	+	568.0	f1_c57bl6.idr	intron (NM_008246, intron 1 of 11)	Tigger5b|DNA|TcMar-Tigger	10423.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	4.16891519046864	4.42032109686946	4.76224602021832	4.27996563232797	4.4197489337104	4.3624138652827	-0.269453530290629	0.568750428592036	0.868718319030953
Merged-chr7-100464906-2	chr7	100464406	100465406	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-8085.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	4.12191868720896	3.92235708962551	3.72550498296177	3.67467515179486	3.50271845816352	3.89937185748593	-0.798337302004548	0.15378070538562	0.522858730489425
Merged-chr4-88719031-3	chr4	88718526	88719526	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172871, exon 1 of 1)	3' UTR (NM_172871, exon 1 of 1)	3482.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	6.11604637053264	6.53706129587025	6.20120279311983	6.19001112409559	6.19451330196343	6.17680889393329	-0.195793586077827	0.506709907376452	0.838542828803423
Merged-chr3-145118601-4	chr3	145118152	145119152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025714)	promoter-TSS (NM_025714)	52.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	8.62815529035566	8.67230266402676	8.20840997957958	8.53478029422074	8.44416755898546	8.40830260471573	-0.0862092943409116	0.706274478570715	0.922946364495901
Merged-chr16-33950331-4	chr16	33949823	33950823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010580)	TTS (NM_010580)	16715.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.99972198538656	5.91362798255124	6.08436780538221	6.49411308087029	6.28938258642465	6.20968781455414	0.580770732443369	0.0428541642546764	0.259542830197797
Merged-chr13-29650810-4	chr13	29650378	29651378	+	783.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 8 of 16)	L1MEc|LINE|L1	204795.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	5.06738573309994	5.10622985618574	4.90643621280072	4.4480531223417	4.4359589255848	4.82511355909223	-1.07492969185451	0.00904441455162683	0.0938662037283452
Merged-chr2-120564671-4	chr2	120564162	120565162	+	920.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	-803.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	6.79529089021672	6.2893061855974	6.62271313625443	7.1752476282013	7.41991658400846	6.78184966932403	0.887109764031276	0.00346465042295978	0.0468731310000396
Merged-chr3-21633979-4	chr3	21633476	21634476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-442676.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.28589993684326	4.6955859768723	4.5150069907928	4.4182272279888	4.66192643855841	4.26603116262459	-0.102350533184039	0.825500012657334	0.958821343666982
Merged-chr18-38427219-4	chr18	38426744	38427744	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	8337.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.47991347762228	3.66143838898807	3.44052267002417	3.6590546326874	3.70533924975321	3.51299468432428	0.342009662256555	0.549520589612601	0.860344773173459
Merged-chr1-181017487-4	chr1	181016994	181017994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312918)	promoter-TSS (NM_001312918)	75.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	7.06590470334509	6.92721939328542	6.77319573630428	6.80284510680811	7.21545509183025	6.83192618842076	0.0637205918332265	0.814714819382496	0.956369939298364
Merged-chr6-108213060-4	chr6	108212559	108213559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-37.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	6.00016174174664	5.99624927386108	6.07318502199629	6.36823591604638	6.33572612798356	6.06608666501752	0.426287817270727	0.13798397514256	0.496485603418127
Merged-chr7-46882197-3	chr7	46881700	46882700	+	845.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20937.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	3.0357154592221	3.19408891036369	3.3018828228742	3.25919890353741	2.93758623228528	3.37261139684303	0.0754579723878709	0.910582321463116	0.979886111561928
Merged-chr2-3511310-2	chr2	3510810	3511810	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149715, intron 1 of 4)	intron (NR_149715, intron 1 of 4)	1504.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	3.33268780201673	3.58368716130269	3.39069301557729	3.59994545067245	3.91153222698722	3.7391311155847	1.1079379316866	0.0585560231537469	0.312958004902023
Merged-chr1-39762552-2	chr1	39762052	39763052	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41563.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	4.88703046792082	4.59041591338114	5.02909524303042	4.50620160082755	4.254739481088	4.78886966135076	-0.757564460633731	0.0931802735409427	0.40657919757719
Merged-chr15-27662925-4	chr15	27662414	27663414	+	752.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	18628.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.47610832960197	4.3877464461451	4.82369268367648	4.24481685131378	4.41627558093705	4.67944667865032	-0.289250108309172	0.530711659981003	0.851304720575858
Merged-chr9-56160601-2	chr9	56160101	56161101	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	CpG	469.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	6.37422740165797	6.59471770218134	6.22286975432568	5.8463745948252	5.56616286835926	5.73820733125527	-1.20337161107444	8.06957494729296e-05	0.0023651045868769
Merged-chr4-10968039-4	chr4	10967519	10968519	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39600.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.14858092078983	3.09987552703689	3.37737990004384	3.42422711175984	3.15762722085915	3.88271467653214	1.17047762525684	0.0818821667432306	0.37857705897487
Merged-chr7-118536056-2	chr7	118535556	118536556	+	783.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172476, exon 16 of 16)	3' UTR (NM_172476, exon 16 of 16)	-2700.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	4.51409273138282	4.58789570182766	4.87417596806182	4.90006576579206	5.19774591044963	4.7492072728268	0.718799855429683	0.0857926899880467	0.387885141736872
Merged-chr15-38278301-4	chr15	38277831	38278831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21569.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.96261434060768	5.89100860527615	5.39440779704425	6.14248123661966	5.95371702294603	5.92075807437247	0.389523165307596	0.245320340015258	0.642393755173178
Merged-chr9-44170174-4	chr9	44169685	44170685	+	769.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	35527.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	5.885209981997	5.97016949061785	5.86375113288153	5.67811051717513	5.62925541378461	5.69558118730548	-0.443506531213886	0.143159841851887	0.505025824429211
Merged-chr7-128748941-2	chr7	128748441	128749441	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	intron (NM_001029982, intron 1 of 18)	4071.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	2.21269234138291	2.5434858933602	2.48059082761614	2.66129414377138	2.31098650094618	2.68130518056972	0.824136754364856	0.348649760966315	1
Merged-chr5-72184649-1	chr5	72184149	72185149	+	969.3333130000001	f0_balb.idr	Intergenic	Intergenic	-16460.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	5.67326721899643	5.91096742002319	6.11369441256292	5.89773866249821	6.00308337693481	6.09042064214267	0.166161717896573	0.593762293362871	0.878614523756331
Merged-chr6-129470541-2	chr6	129470041	129471041	+	976.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 2 of 5)	intron (NM_020008, intron 2 of 5)	2238.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	5.91716004754289	5.96073028237049	6.11621027231733	6.13681290016864	6.40235761024902	6.29778496579679	0.501545217482049	0.0827094869418094	0.380436207266671
Merged-chr17-44459222-4	chr17	44458725	44459725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamRep564|Unknown|Unknown	270653.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	5.27720204161316	5.23330966272734	5.29029697509693	5.23010326202255	5.40420787274573	5.35367777102258	0.136558587780954	0.689731539803903	0.917488557497671
Merged-chr11-34055223-2	chr11	34054723	34055723	+	845.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	RMER17B|LTR|ERVK	8295.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.01398923454057	5.62328499417631	6.08723512817262	5.91555077029813	6.21285087401855	6.30596277728906	0.408209409275142	0.206687351031536	0.597309359759271
Merged-chr5-110135729-4	chr5	110135224	110136224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289580)	promoter-TSS (NM_001289580)	-106.0	NM_172717	231600.0	Mm.30264	NM_172717	ENSMUSG00000014668	Chfr	5730484M20Rik|C230082M18|RNF116	checkpoint with forkhead and ring finger domains	protein-coding	5.43046155049336	5.63454963352715	5.81154828561807	5.53282529194477	5.65040743589082	5.72553225501285	0.0194916223467487	0.952764304792407	0.989287782503419
Merged-chr4-150548289-3	chr4	150547777	150548777	+	768.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	103897.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.97871084125169	3.7603292188495	3.74779391134598	3.23047717581093	3.28616910969905	3.37881120686612	-2.04180494212455	0.000794387450836313	0.0150842973549037
Merged-chr6-38861084-3	chr6	38860605	38861605	+	906.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	B4A|SINE|B4	15085.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.62152920615211	3.3778515876406	3.42047391639884	3.72295874874682	3.17594420710597	3.5483639430843	0.0759026624378744	0.904418921532427	0.978131323042371
Merged-chr9-110352501-4	chr9	110351993	110352993	+	816.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	19137.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	3.42988444927702	3.39494730392125	3.64185182071328	3.27543076917785	3.36696057453058	3.45366541574148	-0.464125847839511	0.435997070552201	0.799430009957291
Merged-chr9-72958308-2	chr9	72957808	72958808	+	665.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	-477.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	5.63153851724435	6.1633102001366	5.9171159193443	6.29923230114395	6.35119752218399	6.28519258802143	0.656654150865952	0.0352263026232347	0.230324547279122
Merged-chr9-122957593-3	chr9	122957078	122958078	+	893.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 1 of 34)	MLTR14|LTR|ERV1	6497.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	5.13018764343529	5.13089788789091	4.99620858853977	5.60412183065266	5.69505515536234	5.49597918627723	1.01015609149459	0.00318995987061637	0.0441727422234189
Merged-chr7-116476027-3	chr7	116475553	116476553	+	900.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28316.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.26093662958929	5.41379591455682	5.81364998150568	5.21618479903414	5.42773347666906	5.58160339072482	-0.177579864213832	0.629027425432064	0.893984559676007
Merged-chr7-135522157-3	chr7	135521654	135522654	+	883.9332890000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	6500.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	2.30286217577851	2.3877346414102	2.49935875881804	2.22726412560285	2.16928493271976	2.1893840546982	-1.44441036533424	0.101575362871774	1
Merged-chr8-83144406-2	chr8	83143898	83144898	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-20954.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.50478190415953	6.56907991760742	6.5397856069397	5.63371957442621	4.98058015050054	5.76553373862565	-1.84290907393697	2.10507447093362e-07	1.37057149121631e-05
Merged-chr13-23437575-2	chr13	23437075	23438075	+	901.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.19522267713581	5.30733732839856	5.05549173399629	5.41102685659824	5.69549546452355	5.59556800894599	0.735234797643418	0.0347276966364473	0.228482816614652
Merged-chr2-31771396-4	chr2	31770898	31771898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11225.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	7.85985722252942	7.84153302625479	7.54338210302636	7.69894697708542	7.96693920563145	7.72404850102158	0.0641335539851512	0.786437743869901	0.948503833695066
Merged-chr7-44359049-3	chr7	44358558	44359558	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	15972.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	3.92921739424249	3.76252605872234	3.70983492087366	3.8603324167339	3.78331240269956	4.12113555219179	0.352890565434946	0.506174997931014	0.838347465097765
Merged-chr6-85432023-4	chr6	85431570	85432570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144918)	promoter-TSS (NM_144918)	94.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	5.36685049179612	5.24160405194165	5.42142711665504	5.67719375852227	5.71918707251402	5.15224503841268	0.411241923004224	0.256669641479202	0.653737977781352
Merged-chr3-95657326-4	chr3	95656818	95657818	+	831.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1403.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.84862765560872	5.73824933104407	6.00588961366417	6.38193723602794	6.40753291731396	6.48113707302294	0.955626863356008	0.000797898892079565	0.0151440627308751
Merged-chr6-30301039-3	chr6	30300534	30301534	+	970.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3505.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	5.71689624725407	5.65100148744066	5.6498183767549	5.78590340006209	5.76506846809188	6.02628412175607	0.327723765641905	0.291958327660882	0.689235268138963
Merged-chr11-98948541-4	chr11	98948038	98949038	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8827.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.74028128502373	6.5520878793384	6.4082304110718	6.82930945510562	6.73366153456881	6.2378044480467	0.0898174131105278	0.764215469973365	0.941958626520407
Merged-chr1-36090223-4	chr1	36089724	36090724	+	951.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21824.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.01859261784427	5.74635458966307	5.90541354110175	5.43825020748213	5.60438659369957	5.66694804737928	-0.588617541347075	0.0650326011284513	0.332569152153904
Merged-chr15-102150896-4	chr15	102150407	102151407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146064, intron 1 of 14)	intron (NM_146064, intron 1 of 14)	332.0	NM_146064	223920.0	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	7.18075052673074	7.08545877852271	7.01594392349676	6.86143116656536	7.18257973240136	6.96402001350248	-0.124470863748185	0.619839953821849	0.889979882381751
Merged-chr13-111868100-4	chr13	111867577	111868577	+	941.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130345, exon 1 of 3)	non-coding (NR_130345, exon 1 of 3)	141.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.88443607963645	5.00644946886057	4.69314249054996	4.81262482455501	4.85073953422751	4.67661097613035	-0.199062230636038	0.617564186523119	0.888810836054056
Merged-chr7-101028736-4	chr7	101028236	101029236	+	966.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16683.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.63303136020607	4.62786147392893	4.84400656935126	4.55582411693579	3.8050864379871	4.06076382129225	-1.33443475589147	0.0108278087985366	0.106282920196843
Merged-chr8-69210239-1	chr8	69209739	69210739	+	620.0	f1_c57bl6.idr	intron (NM_001013379, intron 1 of 3)	intron (NM_001013379, intron 1 of 3)	1193.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	2.97763745858307	3.27517108684025	3.06265590417052	2.98264094702175	3.11003760681106	3.19302595357726	-0.0812651967884105	0.903404909722148	0.977827650905621
Merged-chr4-134469071-4	chr4	134468562	134469562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019641, intron 1 of 4)	CpG	742.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	4.14069142869704	3.82557585648179	3.95037597086323	4.39084623909289	4.11030149170415	4.30456335724088	0.819772057933587	0.0989478687614137	0.419422020575635
Merged-chr1-173878011-3	chr1	173877455	173878455	+	779.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	Lx8b|LINE|L1	2232.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	6.6436180271393	6.57852072063776	6.32108784515969	6.05372826283894	6.29317006171972	5.81745271642048	-0.731273298818916	0.0168553078740416	0.144098812934017
Merged-chr7-67305120-3	chr7	67304634	67305634	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	67724.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.23153077383367	3.36722187559166	3.51167072200038	3.09579869581886	3.11506437928097	3.58081452447236	-0.378173404437307	0.565053171128285	0.866552670637515
Merged-chr15-102203214-1	chr15	102202714	102203714	+	1000.0	f0_c57.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-431.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	6.82692862213711	7.09088619394325	7.13013501287407	6.98692720970074	7.0275395951853	7.24614935552444	0.101905007135509	0.688649361746257	0.9172299553909
Merged-chr11-94392931-4	chr11	94392439	94393439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029600)	promoter-TSS (NM_029600)	37.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.64623077573485	6.5900663724677	6.73593560132264	6.42320872708834	6.6096453111386	6.62067513637726	-0.159968030024456	0.539655714517537	0.856057704035328
Merged-chr5-148554275-2	chr5	148553748	148554748	+	866.666626	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-1460.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.78402147784912	4.86795688771032	5.08910223067763	5.57433611457065	5.7686440375431	5.760346235808	1.59559305200753	5.87200261088896e-06	0.000253816931556805
Merged-chr10-34139834-3	chr10	34139372	34140372	+	842.116699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11900.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	4.35451311259557	4.40586007740167	4.11561886482155	4.66507894147167	4.31348994497267	4.78286835499983	0.722822573584879	0.124154641549806	0.471505936292233
Merged-chr11-54563011-4	chr11	54562521	54563521	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 5 of 28)	ID_B1|SINE|B4	-33125.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.74753773787582	3.6527789691343	3.66917104444796	3.72029193078617	3.3809955573351	3.79003362893151	-0.195854740560725	0.731575456802269	0.931462397625217
Merged-chr14-78732842-4	chr14	78732355	78733355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-126.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	5.46759172750999	5.89269842441665	5.23448310145111	4.90282105009291	4.75063183125771	4.57552953691506	-1.68951230758744	4.07159971326088e-05	0.00132754572469048
Merged-chr6-57768447-2	chr6	57767947	57768947	+	981.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	56678.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	7.21910603711025	7.22137298029033	7.09007050207505	7.06443395763376	7.35567681156493	7.1350260775396	0.0236312545715698	0.922724374809942	0.982621045978137
Merged-chr2-104817001-4	chr2	104816505	104817505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123327)	promoter-TSS (NM_001123327)	-309.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	5.97675811239749	5.78465427987531	5.8565573340687	5.85758002316445	5.46338329242954	5.98711539552657	-0.180636804928267	0.586247245861839	0.875449865187773
Merged-chr11-117783851-4	chr11	117783316	117784316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 4 of 16)	exon (NM_001195088, exon 4 of 16)	1158.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	6.21471262752102	6.1630366247943	6.54969260603233	5.98170722194268	5.94845553959441	6.02138361598645	-0.557256079129483	0.0604256243380804	0.318362271254543
Merged-chr1-171442125-4	chr1	171441627	171442627	+	973.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	4566.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	3.81675891866138	3.66808701951848	3.56738993840637	4.00084908334279	4.0530114447552	4.40283092482324	1.41982628072349	0.00912822806907173	0.0944820999093569
Merged-chr8-46740200-4	chr8	46739690	46740690	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045750)	promoter-TSS (NR_045750)	445.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.96681665426643	7.92398978675874	7.7050759727902	8.12809051169097	8.1796604546128	7.93206720693236	0.302622398736795	0.176449652368139	0.556740450083336
Merged-chr4-132885178-2	chr4	132884678	132885678	+	885.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-720.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	3.60022303207235	3.48477649059663	3.32593781420878	3.26700864116152	3.17602244225408	3.28103378942357	-0.962811410083082	0.117458213803323	0.457576754516462
Merged-chr4-148557856-1	chr4	148557356	148558356	+	646.0	f1_balb.idr	promoter-TSS (NM_016699)	promoter-TSS (NM_016699)	-563.0	NM_016699	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	4.4281355958541	4.53504060188729	4.53396557472438	5.0193779994545	5.03369290711793	5.12219902592342	1.28198233295267	0.0011956818763968	0.0207012687414117
Merged-chr5-30135311-3	chr5	30134808	30135808	+	956.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 7 of 19)	MTC|LTR|ERVL-MaLR	19672.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	4.17437587149416	3.99441905820375	4.00672808976665	3.82932606976521	3.80166449640412	3.71268543725537	-0.860747280418415	0.093785103890143	0.407971085554737
Merged-chr3-137942400-4	chr3	137941918	137942918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23863.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	5.33172072481294	5.2059516170981	4.63362317595751	5.185149708535	5.17780317808701	4.99784044514249	0.0447713365032743	0.914003995625904	0.980851155332372
Merged-chr13-111686265-4	chr13	111685771	111686771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172593)	promoter-TSS (NM_172593)	93.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	4.14165942532043	3.35337907141227	3.62693697854732	3.7843714906047	3.69102856052794	3.90717166988035	0.117200398253793	0.850749697673152	0.964981271430729
Merged-chr13-47224075-4	chr13	47223645	47224645	+	976.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30142.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.65509047094219	6.69867655412316	6.99476656362358	6.19021687316927	6.12165553831463	6.66731685016702	-0.720099190578113	0.0171825787069615	0.14596508515047
Merged-chr9-108626615-3	chr9	108626115	108627115	+	885.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151664, intron 3 of 15)	intron (NR_151664, intron 3 of 15)	22793.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	3.0460464570522	3.06377057535528	3.02488755976712	2.8342288230882	2.7152930530346	2.79065994100996	-1.35806862143703	0.0566271231365729	0.306839649775199
Merged-chr6-50115955-2	chr6	50115451	50116451	+	590.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	5091.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.85893267171359	6.21204958338513	6.2826021290069	6.28720137370042	6.37323224215619	6.15882569188658	0.264417720388404	0.377112466885803	0.759616521190546
Merged-chr12-111726146-4	chr12	111725497	111726497	+	996.1785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163388, intron 3 of 5)	intron (NM_001163388, intron 3 of 5)	12728.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	2.99057854173207	3.12173585770624	3.77544829654547	3.42062229917921	2.96721665698698	3.46208101336466	-0.149160372240098	0.840218222390671	0.962819298477451
Merged-chr19-46484294-4	chr19	46483795	46484795	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17353.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.7124762997207	7.60333205488672	7.25039069016385	7.84657645974237	8.02350686209397	7.80729419163586	0.508720640418048	0.0378851289158697	0.240728965775616
Merged-chr13-55213508-2	chr13	55213008	55214008	+	596.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008739, exon 2 of 23)	exon (NM_008739, exon 2 of 23)	3726.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	5.02986743707995	4.77920340460682	5.08066723958164	5.17960896135664	4.8280860900431	5.32973164745965	0.325863606041236	0.414473179239817	0.785828006486374
Merged-chr15-8206396-3	chr15	8205884	8206884	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162906, intron 21 of 52)	L1_Mus2|LINE|L1	37278.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	4.23281866458652	4.34142229796644	4.25098570619358	4.2301248266161	4.38509194031263	4.17823918184762	-0.00626045160645764	0.98908649506079	0.997508825363283
Merged-chr15-38245594-2	chr15	38245094	38246094	+	780.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26391.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	3.1562868175525	3.27374620896588	3.305193163914	3.31523837803581	2.95911654331479	3.53383363786228	0.158035449483841	0.813709201096345	0.955940138311315
Merged-chr5-97364409-2	chr5	97363926	97364926	+	781.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27904.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	2.36965633565892	2.49886193396063	2.73786373311033	2.74510115432028	2.45503451306808	2.98371118793187	1.098359646474	0.188963604753127	0.574471451381007
Merged-chr14-25377606-1	chr14	25377106	25378106	+	906.0	f0_balb.idr	Intergenic	Intergenic	-81579.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.62413835256649	5.80569063714089	5.84220421310703	5.45766120315356	5.19904048612351	5.39453103252835	-0.776353632485563	0.0195240058866617	0.15884099146844
Merged-chr9-111057498-4	chr9	111057012	111058012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	6.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.74670167157115	8.73746239390449	8.07124347339466	8.3982477552914	8.69383212337187	8.05777054777532	-0.201918570045751	0.483004179200911	0.825931190771669
Merged-chr4-32239125-1	chr4	32238625	32239625	+	1000.0	f0_c57.idr	Intergenic	CpG	-178310.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.73421475248802	6.67488783988465	6.79008703428973	6.29930603986994	5.79142400916001	5.99944151201971	-1.13048198798545	0.000129889428124848	0.00353775434874383
Merged-chr15-83038249-3	chr15	83037741	83038741	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4844.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	2.90531894277345	2.70335894851234	2.94149536257777	2.94017692725975	2.89891888302187	2.89378909909563	0.297850429480221	0.672149989811881	0.910735325716773
Merged-chr2-23014319-2	chr2	23013819	23014819	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RLTR6-int|LTR|ERV1	25922.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.08790259247037	3.98665863496439	3.91966749096741	3.95603190079361	4.54986591337053	3.51436364567234	0.163800703011623	0.892931726596973	0.975146620821922
Merged-chr19-60861441-4	chr19	60860941	60861941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362384)	promoter-TSS (NM_001362384)	-13.0	NM_053198	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	5.78833465037105	6.12841138681832	6.19908492960947	5.87291179297086	6.1578543123929	5.63441616914851	-0.216707428156296	0.517886914222043	0.844840133424329
Merged-chr2-91476819-4	chr2	91476337	91477337	+	897.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 10 of 37)	MIRb|SINE|MIR	19306.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	6.00128749092701	5.99343722781201	5.67669258048917	5.56958363038068	5.57772741331631	5.44323085967476	-0.678432306150418	0.0347482229585023	0.228563647109175
Merged-chr19-40693511-4	chr19	40693031	40694031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	33761.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.56081902343832	6.21540253355236	6.41902246342065	6.77048669043279	6.7194413558883	6.42164585181028	0.398191278737393	0.159613041684436	0.531877190382303
Merged-chr8-40610446-4	chr8	40609922	40610922	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24370.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	4.05993034637032	4.1353410302064	4.29236263647859	6.33124535380121	6.61533505588091	6.24158687634313	5.31941739774188	5.09948437384839e-25	8.83995616206618e-22
Merged-chr5-72552157-4	chr5	72551616	72552616	+	908.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	7529.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	5.45001128269247	5.45993086997811	5.89984148580164	5.88447817084907	5.98976995908631	6.19097125894281	0.749144682010013	0.0235332892590263	0.179832344691729
Merged-chr2-153649678-4	chr2	153649259	153650259	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271744, intron 1 of 22)	CpG	310.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	5.35636066258114	4.9087032482293	4.74763227505025	4.68359950048793	4.42624056597112	4.55925040833695	-1.10230304830304	0.011233510023303	0.109183261537087
Merged-chr11-120041431-1	chr11	120040931	120041931	+	1000.0	f1_balb.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	350.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	8.60917716520421	8.79958086760686	8.39828634636817	8.46820473974096	8.67226222736904	7.81575521121243	-0.329633154375082	0.24774968997192	0.644775309745513
Merged-chr6-125041239-4	chr6	125040755	125041755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	1407.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	8.11163359544314	8.12028800977686	7.82990699272485	8.32775991677467	8.58980852137003	8.09501486838171	0.465350314990488	0.0557298191149488	0.303877246980122
Merged-chr7-44832305-4	chr7	44831809	44832809	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053074)	TTS (NM_053074)	-3979.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	5.03963741579466	5.23482436128784	5.6115725021989	5.32907340307241	5.36269019940243	5.40175318815278	0.11943988358355	0.745505612951356	0.936177103310491
Merged-chr9-37347250-4	chr9	37346744	37347744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081429, intron 2 of 15)	intron (NM_001081429, intron 2 of 15)	1148.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	4.90319178066538	5.04100447165958	5.06042756608617	5.09542796667896	5.47555349834588	5.15952384348104	0.550039118256323	0.141191777217296	0.501979601184758
Merged-chr5-146221947-2	chr5	146221426	146222426	+	637.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-469.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	5.67155672600774	5.96076178103185	6.05640448536437	6.06787767771306	6.16242497242718	6.11691773902417	0.378843810276443	0.210504784959877	0.602621125710907
Merged-chr10-87906492-1	chr10	87905992	87906992	+	608.0	f0_balb.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	45381.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.64919698513526	4.7302032464332	4.78533255826867	4.97427279959861	4.84114723174832	4.69283088227851	0.289856945073646	0.465319766974981	0.816962993911637
Merged-chr5-147748197-4	chr5	147747682	147748682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22194.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	3.12844754127503	3.16069219746172	3.44487756058529	3.1704627010258	3.06872632574907	3.07161250819655	-0.601997837598373	0.356248777701855	0.743149157465617
Merged-chr11-62731852-4	chr11	62731351	62732351	+	932.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2758.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	4.51236276656668	4.87790011552544	4.77196195930606	5.09685872213428	5.13675091570186	4.91525195370901	0.727094833200903	0.0684418989929444	0.34221507914146
Merged-chr18-20735601-3	chr18	20735093	20736093	+	929.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10811.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.50629545330747	6.28314614331797	6.48773604499508	6.24112545354553	6.72683828930884	6.54700888564229	0.161621510524229	0.57888877098829	0.872437129840066
Merged-chr10-80935534-4	chr10	80935064	80936064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5473.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.2645690607279	3.92165198071317	3.81266790136459	4.23106006837076	3.89212767753019	3.88491186143622	-0.021294444185289	0.968290836781432	0.992749253886362
Merged-chr18-82910605-4	chr18	82910111	82911111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	-268.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	7.59810209542592	7.33421514698126	7.24932628257044	7.49306219896746	7.29962696918945	7.35286905569759	-0.0363397629572758	0.881187066596136	0.97262624933271
Merged-chr17-25270884-2	chr17	25270384	25271384	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	PB1D7|SINE|Alu	2547.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	2.99310943573678	2.97416804826716	2.81141562085452	3.02134776078423	2.96646876944853	3.45472425819802	1.01224839519935	0.158910530165862	0.530816033482179
Merged-chr10-127325301-2	chr10	127324805	127325805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-337.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	3.80584835487693	3.28452547454792	3.68650016590128	3.53001887613313	3.49426670050226	3.49050750906587	-0.374299072998266	0.536852373946854	0.854215768737235
Merged-chr9-72111901-4	chr9	72111389	72112389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	-70.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	7.02023251736134	7.18433206803273	6.55724347141631	7.13145413909244	6.83898546881836	6.70594145656086	-0.0771741448697468	0.794251407490538	0.950647608775626
Merged-chr7-27488089-4	chr7	27487603	27488603	+	879.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	1150.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	5.74187673226613	6.06807649556885	6.14190726237281	6.25623411137373	6.30603730650657	6.377877612376	0.547803243340811	0.0648029950855878	0.331850283237962
Merged-chr5-121839374-2	chr5	121838874	121839874	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2515.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	7.39678794816163	7.53450332296585	7.3391938220726	7.1525118688284	7.19282369681928	7.31877707599005	-0.313454440285128	0.177893155603047	0.55892688546374
Merged-chr19-5023767-5	chr19	5023303	5024303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007854)	promoter-TSS (NM_007854)	-203.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	7.74166695426976	7.49077823397063	7.74890773152959	7.63255529912781	7.87702447306772	7.71907714151674	0.126396539349227	0.585713192821714	0.875126871488964
Merged-chr13-48931943-1	chr13	48931443	48932443	+	900.0	f0_balb.idr	intron (NM_001033268, intron 5 of 17)	intron (NM_001033268, intron 5 of 17)	35885.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	4.00929242809646	3.910143679221	4.39685054863069	3.9573392584831	3.90547121549468	4.17474980762022	-0.293322818951696	0.569998320636091	0.869008789930639
Merged-chr7-4510031-4	chr7	4509522	4510522	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011618, exon 8 of 14)	exon (NM_011618, exon 8 of 14)	5953.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	3.355850553834	3.04358833874985	3.42094796267389	3.42548422877146	3.39506479043404	3.79030541911471	0.99923163157175	0.119350244528952	0.461837657385714
Merged-chr1-127868802-4	chr1	127868307	127869307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178690)	promoter-TSS (NM_178690)	34.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	6.47707524924651	6.75078209461983	6.20322432925097	6.41000098718692	6.37160094016143	6.10485585748012	-0.32273627266719	0.286509908679136	0.683725296730741
Merged-chr10-117434222-2	chr10	117433713	117434713	+	769.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13222.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	2.49722517609498	2.78835064936947	2.78263879919855	2.73095491206301	2.45915815147775	2.47250869107834	-0.755038193666329	0.352678846495337	1
Merged-chr14-18236387-2	chr14	18235887	18236887	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	B1_Mus1|SINE|Alu	2719.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	4.61980685475646	4.52817196196044	4.8507137067943	4.75525875605149	4.68965303877136	5.14297904257295	0.46458883507007	0.272426978287375	0.669663338532819
Merged-chr15-6425522-1	chr15	6425022	6426022	+	747.0	f0_balb.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19811.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	3.46374445209659	3.51982030852557	3.33220422024464	3.44822538276903	3.39675620320727	3.46094343796775	-0.0474856426080033	0.935383602708844	0.985852245513165
Merged-chr15-98969809-2	chr15	98969309	98970309	+	688.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-16156.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	2.60030432332981	2.58228358286485	2.6182612119806	2.29071782166614	2.39055083517484	2.50399756668837	-1.28648184125523	0.118921364244544	1
Merged-chr17-5600738-2	chr17	5600238	5601238	+	803.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	108138.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.1253460790342	3.94118833405291	4.1049772541689	3.87252789150743	3.65451186867533	3.88711917115255	-0.79570853825818	0.122915992352823	0.469100941508007
Merged-chr9-32470626-4	chr9	32470120	32471120	+	802.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	70832.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.10658150712021	4.35370386342761	4.56766459510282	4.45413616130897	3.84683704204232	4.21760824341372	-0.418989219954266	0.419893494118359	0.789348043413415
Merged-chr17-33910158-4	chr17	33909662	33910662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	561.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	8.49009424883888	8.69184569265589	8.23257637414062	8.39487327759308	8.67993679860776	8.36403788813728	0.0017713880307156	0.99403324714917	0.99889519013548
Merged-chr7-127207586-3	chr7	127207078	127208078	+	803.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144522, exon 1 of 9)	exon (NM_144522, exon 1 of 9)	890.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	5.9952078777366	6.17510459200193	6.43904187272889	6.52750517954257	6.60784643731358	6.85426833230093	0.74819989680209	0.0101586241527971	0.101486228659616
Merged-chr5-5360582-2	chr5	5360082	5361082	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	19669.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.92522598742672	5.88397836696483	5.80125346479469	5.29199435960897	5.46753229956842	5.57255128764575	-0.795050463011551	0.0128801602299796	0.120189791680626
Merged-chr10-37194312-5	chr10	37193859	37194859	+	954.507141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55433.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.71884935537156	7.8273054021719	7.76666756184383	7.46290289039772	7.72755771474115	7.72921189729157	-0.181959739201783	0.420833205013194	0.789927346042947
Merged-chr5-107987118-7	chr5	107986617	107987617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026062)	promoter-TSS (NM_026062)	-40.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	6.81777666496226	6.63020852328936	6.85854609149202	6.87604381768331	6.59409654853795	6.63905952449818	-0.0936171851820208	0.722992040485288	0.928984275173032
Merged-chr17-30506976-4	chr17	30506501	30507501	+	964.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	69286.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	4.4052325990501	4.33989955658448	4.64133440743423	4.51333828320811	4.65834948506555	4.37343598422105	0.176238007959975	0.689343670874496	0.917319650405699
Merged-chr3-109352870-2	chr3	109352370	109353370	+	774.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12187.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.1356737620324	3.97190124337358	4.29055168293689	3.61902540242258	3.62277351478687	3.46416886212961	-1.81512413782241	0.00133149029699645	0.0225321628294652
Merged-chr11-74650677-2	chr11	74650177	74651177	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	1182.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	4.73198637638289	4.53045232927695	4.65510648316327	4.92607014692239	4.68059016811284	4.63974112775264	0.271102414542062	0.510495763380944	0.840902155430209
Merged-chr3-96197615-4	chr3	96197118	96198118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-32.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	7.12929070877612	7.52020175381758	6.59135027118467	6.90786820186597	6.92549851397265	6.61429274947441	-0.484993911238611	0.13091131425967	0.483569810071875
Merged-chr11-114891340-4	chr11	114890846	114891846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 1 of 6)	Lx8|LINE|L1	1305.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	8.12735525096079	8.29003270434735	7.89772204686452	8.05633463758909	8.5544100161785	7.63416486422244	0.0422983162142571	0.88652141649259	0.973794308941933
Merged-chr9-50905476-3	chr9	50904979	50905979	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	48555.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.8216322759125	3.6059886614899	3.34020428720664	3.78252794409229	3.594083035441	4.04741970748557	0.67554033992993	0.267399616745791	0.664678416083957
Merged-chr6-125480649-2	chr6	125480149	125481149	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	14111.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.76260980929635	2.72304471795349	2.80782149266788	2.93071530238864	2.86506883690317	3.11513153082602	1.03083351235783	0.146475870770643	0.510490649427587
Merged-chr13-9179768-2	chr13	9179268	9180268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85887.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	2.95063480458718	3.09456673860829	3.16833832677737	3.31282835318842	3.23905067199512	3.18231945175913	0.762774585954183	0.236990048710863	0.633436049796627
Merged-chr4-139205159-4	chr4	139204659	139205659	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	11048.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.12342453390233	6.00543521561734	6.35191163905819	6.77932374234619	6.67591167383091	6.20749724706292	0.700262919363018	0.0219770914791226	0.171915937557096
Merged-chr3-158032323-6	chr3	158031817	158032817	+	933.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	-545.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	7.64755695547077	7.70704545223332	7.53104385342139	7.73163913874196	8.01698072032605	7.59782109631732	0.243546535650453	0.308204383199148	0.704264028045112
Merged-chr19-5038333-4	chr19	5037820	5038820	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	-506.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	4.27218747111873	3.93451300274639	3.85692556552143	4.1360411993793	3.95795321601073	3.76211294554416	-0.221496848050879	0.678100343373643	0.913351670094672
Merged-chr7-43564033-2	chr7	43563533	43564533	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1663.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	5.27331783866172	5.45912364640531	5.27110452635006	5.55587162019313	5.35622810075835	5.36717624321024	0.169924749359044	0.619297999225071	0.889749463061948
Merged-chr11-118460497-2	chr11	118459997	118460997	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5502.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	5.73143513533197	5.64119903666647	5.67119818502962	5.52110845822834	5.60511662152482	5.70686214290264	-0.135337935218628	0.667239561152941	0.908654022101339
Merged-chr14-55194029-4	chr14	55193541	55194541	+	839.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27966.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	4.83312030952942	4.91386070587572	4.83131695453486	5.10852908597654	5.13605960940311	5.07961060630385	0.534735731278478	0.147461810874977	0.512338818292416
Merged-chr1-172313206-5	chr1	172312768	172313768	+	998.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	901.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	8.02400381653982	7.98152823856573	7.81911251549406	7.45299546905622	7.4791752617596	6.80732502720933	-0.943614010456529	0.000682751570182382	0.0134299502490319
Merged-chr12-28654433-4	chr12	28653916	28654916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286865, intron 3 of 7)	intron (NM_001286865, intron 3 of 7)	4814.0	NM_001286865	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	5.04957581919955	4.71340075963882	5.14361695127844	5.32845834444862	5.71862828777134	5.30626316722117	1.02119593227364	0.00805014114483408	0.0864416240004328
Merged-chr5-139395354-2	chr5	139394854	139395854	+	881.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001362206, exon 2 of 2)	3' UTR (NM_001362206, exon 2 of 2)	5450.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	3.73290736168592	3.55773734582609	4.12022755081688	3.79248653354831	3.22579439630244	3.83030394072554	-0.577294238806219	0.367354705520686	0.752266638864106
Merged-chr2-33047625-2	chr2	33047125	33048125	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	38832.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	3.45367662636501	3.83000515426287	3.2539967938025	3.66657956255663	3.47476586676123	3.82946585847026	0.40725950818559	0.522801739696771	0.847779996037747
Merged-chr1-39464014-4	chr1	39463550	39464550	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	14697.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	4.64036165369486	4.65126520604407	4.52733959166365	4.83653150614962	4.59501584044728	4.90566349937902	0.385225159884094	0.350826631004189	0.738815453164556
Merged-chr16-33917642-4	chr16	33917137	33918137	+	989.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49401.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.7134969219128	5.71925535720445	6.04574725256465	5.47227955802721	5.80896857054291	5.78846492718718	-0.225950274328142	0.494182482447571	0.831821998694449
Merged-chr11-3266403-4	chr11	3265881	3266881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	82.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	6.86826729289113	6.77662580946891	6.62530765923405	6.96042809936468	6.81327545185906	6.54202461407179	0.0386621409637811	0.885703045844879	0.973636976161493
Merged-chr19-5713720-4	chr19	5713224	5714224	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9253.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	6.08623384893654	5.48338192177471	6.37184124685669	5.99293915938649	6.02820376507688	6.43102866582738	0.230962994901723	0.533289230501186	0.852361319468741
Merged-chr10-80292391-4	chr10	80291915	80292915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-16.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	7.16001542099731	6.93509485997054	6.8182339520072	6.78869930030119	6.68803994968234	6.50839158401802	-0.488840246377632	0.0655351934904625	0.333907667452554
Merged-chr3-9895844-1	chr3	9895344	9896344	+	579.0	f1_c57bl6.idr	Intergenic	Intergenic	-62165.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.86614173235286	2.78479187012115	2.7760876281181	2.49889045457172	2.50784490396246	2.66306977830492	-1.48606220370637	0.0564898077778695	1
Merged-chr11-96896055-3	chr11	96895555	96896555	+	923.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20459.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	4.57023020026296	4.10624302745939	4.28464226314925	5.23393980695892	5.19076739283009	5.42111467527439	2.15817242038353	1.00320128961626e-06	5.44161492218971e-05
Merged-chr14-27230904-4	chr14	27230403	27231403	+	847.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-7107.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.74516333876747	5.56466272890043	5.20573006335535	5.15184116437307	5.37833068774624	4.8861722613712	-0.714496912067337	0.0680780991037308	0.341417536171971
Merged-chr1-36082899-2	chr1	36082399	36083399	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14499.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.5982522193279	7.30355912090244	7.28758774231685	7.41844147728223	7.5751303069455	7.00723742405562	-0.0611571628202527	0.821120064418087	0.957942312428027
Merged-chr3-87324046-2	chr3	87323547	87324547	+	786.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-33834.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.5133364400203	3.48806621087692	3.52078651212314	4.13312094647728	3.98814648457269	3.96788760723181	1.75997242388866	0.00122153983837718	0.0210613109970344
Merged-chr19-11053252-4	chr19	11052781	11053781	+	912.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2715.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	6.56069514525773	6.96218430087079	6.79332418533653	6.80708071561365	7.06473205662812	7.02046937548802	0.286945460891822	0.28484185171864	0.682457480121006
Merged-chr2-4617007-4	chr2	4616523	4617523	+	957.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35112.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	4.9436144682834	5.22187369925864	4.89632595832424	5.15261528130566	5.02763254369666	4.92417192432924	0.00887046418684553	0.981479203627088	0.995717195177154
Merged-chr4-59189757-2	chr4	59189257	59190257	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 1 of 8)	CpG	207.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	6.58617163423136	6.46772221429881	6.30582162602722	6.49794186057212	6.32425636734292	6.12857220543665	-0.216637192442605	0.446849532821233	0.806122541261987
Merged-chr4-124701769-2	chr4	124701269	124702269	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	1070.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	4.39408095961006	4.38551017285848	4.50994239937873	3.79147469325208	3.88797886363319	4.05690706152522	-1.48536660327119	0.00231003114585052	0.0344970986001264
Merged-chr1-172456137-4	chr1	172455648	172456648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19212.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	6.6237577229317	6.63369560363132	6.68622839188232	6.93682159920474	7.12358357117552	7.00833253220449	0.593378421747732	0.016316089606305	0.140789088868757
Merged-chr19-46040400-3	chr19	46039926	46040926	+	772.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-805.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	4.69756540076541	4.94405807457704	5.29069096651535	4.81805965046123	5.2247585108278	5.48941023719931	0.438461264977061	0.306244770459829	0.702409583230097
Merged-chr11-83964371-4	chr11	83963867	83964867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194341)	promoter-TSS (NM_194341)	-64.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	5.18954096645288	4.71424914494352	4.82477274620083	5.12910772466719	4.73574613961688	4.8523593638724	-0.0353941903232989	0.932666495036209	0.985256441991909
Merged-chr17-83646570-4	chr17	83646094	83647094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14699.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	4.56884700260544	4.71364774091058	4.76991154764564	4.38775195269949	4.56310845178515	4.79837607743128	-0.232216604792486	0.585152096582166	0.874889234033079
Merged-chr7-145111598-4	chr7	145111104	145112104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96515.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.71147338172541	8.73947379299133	8.33720599261263	8.82774268317467	9.13591132657921	8.54535991663368	0.346364587843004	0.170293517667597	0.547645629515553
Merged-chr7-97251824-4	chr7	97251340	97252340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	74124.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	5.88787810412852	5.73405646892486	5.90164941968032	5.57788948989832	5.97745529896482	5.53835651610714	-0.19848104037172	0.550631514392422	0.860709619458349
Merged-chr4-130663250-4	chr4	130662777	130663777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159604)	promoter-TSS (NM_001159604)	-44.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	6.63132359263448	6.71581114774391	6.46678912692129	6.7445952667186	6.31377763050818	6.3931566501707	-0.187255405965607	0.511065847582224	0.841331921585713
Merged-chr11-4187169-2	chr11	4186669	4187669	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	CpG	336.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	8.10672394710998	8.28345606574694	7.58676732804117	7.85860700197722	7.93779292241926	7.47325392239195	-0.362405641034217	0.196437751841974	0.58423678218776
Merged-chr6-33514737-1	chr6	33514237	33515237	+	904.0	f0_balb.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	265609.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	5.31725282390176	5.67174680999791	5.44514581030788	5.43966974263007	5.65530745939656	5.32012067108733	5.89308211179113e-06	0.999986582743456	0.999986582743456
Merged-chr5-124622173-2	chr5	124621673	124622673	+	591.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	B3|SINE|B2	-6879.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	3.85521132717955	3.65948254664646	3.46592390215033	3.6943183790819	3.71062657023929	4.30729418927244	0.803753975766661	0.183040125870197	0.566085379224821
Merged-chr12-56429587-3	chr12	56429077	56430077	+	794.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83683.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	2.88110712988573	2.94478524460235	3.19374102318527	3.38908504882897	3.21104981854814	3.0894813008217	1.02065307842165	0.131688507184697	0.485276231435972
Merged-chr17-33931717-4	chr17	33931201	33932201	+	836.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1807.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	5.28970309821002	5.34945226905685	5.74084570402148	5.65322593788194	5.66331795490369	5.80203335933503	0.456350543275875	0.179144629827362	0.560599917384355
Merged-chr14-65374225-3	chr14	65373709	65374709	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	15533.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	2.82914447392375	3.10319338814347	3.15009542742763	2.88617699047822	2.54539368387033	2.67726790336353	-1.68195092635495	0.0330883556547395	0.221831802179178
Merged-chr1-92180440-4	chr1	92179874	92180874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-33.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	7.77243520075288	8.17006515652029	7.80861244328953	7.99686815259161	7.91269099257873	7.51435064627496	-0.146654211665915	0.570356237688332	0.869165998050818
Merged-chr9-53699611-1	chr9	53699111	53700111	+	574.0	f1_balb.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	6621.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	4.38034319959344	4.51386473852144	4.68782440614396	4.30747405503959	4.26610320791941	4.52304507993688	-0.420285172703013	0.344953361590728	0.733451201288937
Merged-chr12-102422939-4	chr12	102422429	102423429	+	764.776794	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	L1MB7|LINE|L1	16884.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.4301375735478	5.67649908820071	5.87085885468918	5.61222874826974	5.41954684220559	5.40257584988873	-0.338694596067771	0.321033993275656	0.71469917895122
Merged-chr14-70060175-2	chr14	70059675	70060675	+	651.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028560)	TTS (NM_028560)	-17270.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	6.19436818431257	5.91861526519189	5.83027021447655	6.54966831025666	6.59301573512847	6.14046015965951	0.759066872580291	0.0143307726126577	0.128758765527915
Merged-chr8-46844786-4	chr8	46844308	46845308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	105063.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.53018550727211	6.95912198811503	7.57504175762329	7.2687559045826	7.50459880939881	7.44830808998988	0.0466702809902596	0.865960763596834	0.968700687218388
Merged-chr2-128820718-1	chr2	128820218	128821218	+	959.0	f1_c57bl6.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	2415.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.94417882505822	3.91064191063467	4.02733965192794	3.83997967653338	3.57495597964474	4.00291040901409	-0.478831155035117	0.369013969257244	0.753809303364759
Merged-chr7-49753269-3	chr7	49752791	49753791	+	913.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5815.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	2.55468913241809	2.68459283884	2.7287347456149	2.75104081916658	2.54460965682386	2.92015408720768	0.457617676874549	0.549618254448539	0.860379947250518
Merged-chr11-79252570-3	chr11	79252079	79253079	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	2116.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.62766207531946	5.83841717439061	5.5567079175728	6.08724137577425	5.90181706815069	5.49712773943049	0.315204842927216	0.356372732440136	0.743237008563263
Merged-chr6-31189686-2	chr6	31189186	31190186	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	28788.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.56775233216629	3.35875597460545	3.42418281469821	3.21235077519216	3.21460149603457	3.26919696058004	-0.895726096447908	0.143298229039262	0.505355524537813
Merged-chr1-171270918-3	chr1	171270436	171271436	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020579, intron 1 of 7)	intron (NM_020579, intron 1 of 7)	608.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	6.25987808765327	6.43517549886009	5.95542143939069	6.02319804974401	6.10409750788647	6.04105004014603	-0.31427109671482	0.296389780944439	0.693108548777091
Merged-chr5-146809342-1	chr5	146808842	146809842	+	703.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-14386.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.14075563159966	6.36288731643429	6.55665836495517	6.41843146013551	6.41425931885848	6.20468692620416	3.31058631185856e-05	0.999908549438473	0.999986582743456
Merged-chr10-59735636-4	chr10	59735133	59736133	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33070.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	6.41524584831002	6.45468205245668	6.41856041830965	6.09032412859722	6.28064971720145	6.13757598709408	-0.416990912945956	0.129221744359219	0.480785320364958
Merged-chr1-165641266-2	chr1	165640766	165641766	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6725.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.7060846512903	4.70568990560764	4.35824093213179	4.42909497851594	4.84147216136269	4.84235435100594	0.258200761527779	0.561084687462564	0.865407287431561
Merged-chr3-8669934-3	chr3	8669431	8670431	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2893.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	2.71544254666695	2.66847424337446	2.61662435315851	2.61298486371852	2.47444459008145	2.75238092189719	-0.319327116500079	0.677497785491362	1
Merged-chr3-87215351-4	chr3	87214826	87215826	+	831.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40579.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	5.54819384482881	5.49488199447473	5.39507787531194	6.0103278349814	6.25018373423594	5.78319288367375	1.00131578514693	0.00210448762510834	0.0320949791623927
Merged-chr13-49272437-4	chr13	49271938	49272938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23732.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	5.88205671634732	5.75784966224963	5.83658585117822	5.80796010462652	5.73015145662169	5.66377468794866	-0.158338810296083	0.603845187607305	0.882837513989345
Merged-chr10-120234156-3	chr10	120233641	120234641	+	772.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7081.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	2.75460471929576	3.15943179006368	2.99201329322672	3.43304268041188	3.33313783829532	3.36388818085759	1.7087829512885	0.0173878323618156	0.147182782824207
Merged-chr8-26980819-3	chr8	26980310	26981310	+	877.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3474.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.01344071604046	5.9797353881194	5.93768995174681	6.17263198533712	6.12894056699717	6.35534850322392	0.401694400635477	0.161839791867088	0.534973994981591
Merged-chr5-65574776-2	chr5	65574276	65575276	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 3 of 6)	RMER6A|LTR|ERVK	37531.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	3.64516004806071	3.63282226073011	3.72694835245876	3.77480549052926	3.70321296850381	3.94276629367071	0.457660895847824	0.391961981194703	0.770782330002482
Merged-chr1-180777825-4	chr1	180777301	180778301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35804.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	7.23787803808942	7.56352706343106	7.568500019241	7.44871720063122	7.75026018759223	7.42433717696208	0.136665449378563	0.586176384166109	0.875413966790394
Merged-chr2-156146786-2	chr2	156146286	156147286	+	956.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164216)	TTS (NM_001164216)	2553.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	5.59330995836535	5.64617050644445	5.4758775376213	4.94560241159364	5.15356832953473	5.08918983999784	-1.01257749268742	0.00370910041728781	0.0491992392032017
Merged-chr3-52199164-3	chr3	52198670	52199670	+	745.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69167.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	5.71586679519932	5.68721894637022	5.77844199049912	5.38472124042291	5.81994633985641	5.57433073723078	-0.199706051615809	0.547921651335037	0.859456555901125
Merged-chr16-27354567-2	chr16	27354067	27355067	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198166, intron 4 of 4)	intron (NM_198166, intron 4 of 4)	15672.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	3.18659635353062	3.47381198059173	3.54952405576227	3.44682093995313	3.43715022423563	3.514691137374	0.211839770599218	0.725192645901748	0.929580048375405
Merged-chr15-100632091-2	chr15	100631591	100632591	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3468.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	4.78752067485625	4.83865261019775	4.96374815205283	4.92743196437465	4.86476327688179	4.99337730734443	0.145424862212087	0.702531562420953	0.921908665861083
Merged-chr12-85619692-2	chr12	85619192	85620192	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	19674.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.64331817941397	3.30829698481877	4.01187545127961	3.81021286286015	3.85254069008108	3.79787303379408	0.461525791582939	0.442241522418398	0.803152380063951
Merged-chr3-52199548-3	chr3	52199052	52200052	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68785.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.76088592771302	3.73782973369544	3.78909813096685	3.63728638722592	3.73288292399807	3.85808671449804	-0.0643378168084685	0.903316589946023	0.977821288653649
Merged-chr10-58405540-3	chr10	58405032	58406032	+	889.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	11159.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	5.27640069765608	4.84169638324894	5.33135804184367	4.80070329233461	4.84159616914653	5.50139764869844	-0.175357056223857	0.688517954622609	0.9172299553909
Merged-chr12-98250282-2	chr12	98249782	98250782	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	Lx9|LINE|L1	9177.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	4.67715255416788	4.68801856542677	4.51381084789676	4.59567443469084	4.33509871760479	4.4046397196066	-0.460779040765253	0.283171197118045	0.681169665885673
Merged-chr11-11775111-1	chr11	11774611	11775611	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	33851.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	3.53968964351858	3.25490137870509	3.94424490422013	3.62754650377418	3.2872555610038	4.13693901420369	0.395338795199737	0.561837592086923	0.865580593452079
Merged-chr17-84266377-2	chr17	84265877	84266877	+	762.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	PB1D7|SINE|Alu	-78430.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.55044243694366	3.61545517153657	3.80243173693668	3.43082742581075	3.71432443261319	3.72387586548674	-0.0816594771965814	0.885533803526499	0.973632007873161
Merged-chr5-88596230-4	chr5	88595728	88596728	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	MTD|LTR|ERVL-MaLR	12715.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.11332043830881	7.01306475262706	6.99524232556323	7.14141019320905	7.0433518116521	7.0797102445397	0.0668015492771667	0.777883710911315	0.945257566403653
Merged-chr13-113793639-2	chr13	113793139	113794139	+	934.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-869.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.93345609249429	5.03269146160588	5.09096480404199	4.85581541642239	5.04167479177341	4.70821739118661	-0.279023244480509	0.47307605090526	0.820624417189061
Merged-chr12-79633635-4	chr12	79633116	79634116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	291117.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.79726945883589	6.39005240342436	6.46610335227783	6.38268627184587	6.54212739573429	6.41372884603406	-0.186758797795578	0.509585730339681	0.840445299624642
Merged-chr19-45014808-4	chr19	45014300	45015300	+	867.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145503)	promoter-TSS (NM_145503)	-376.0	NM_145503	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	5.1800862496665	5.13936881642487	4.94413464572813	4.80967680818321	4.35359038769476	4.74272435863432	-1.03017099822375	0.0131125196640319	0.121490652339442
Merged-chr11-117242978-1	chr11	117242478	117243478	+	603.0	f0_balb.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-23268.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.30192727166632	4.2433409460724	3.90002530093982	4.00499054669152	3.70636639390623	3.69178769161843	-1.07831575244439	0.0446113535230251	0.266247418156927
Merged-chr3-89906422-2	chr3	89905922	89906922	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	6774.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	4.7978022401272	5.15940901726263	5.00070684747912	5.27483199950306	5.24597364100092	5.38859836132357	0.626342940047571	0.091079258752604	0.401681399389764
Merged-chr2-169700322-4	chr2	169699803	169700803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	66657.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	5.20931300672769	4.99990443853264	5.29539409004382	6.12572768544412	6.14482340506484	5.58107408690902	1.53881176719292	1.36006279330521e-05	0.000522475091899077
Merged-chr2-124623036-1	chr2	124622536	124623536	+	683.0	f0_balb.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	12740.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.76034961356673	6.19656208580409	5.97613537897231	5.98478314335818	6.02100233404134	5.91848013765152	-0.0260364479798927	0.933179067773845	0.985356091252617
Merged-chr1-13296702-2	chr1	13296202	13297202	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	75727.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.38270579995677	4.40645872972855	4.27939774504375	4.47292524141821	4.52990570637988	4.20397786610337	0.152469100654944	0.735380948659687	0.932740485166675
Merged-chr11-99068658-4	chr11	99068182	99069182	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172564, intron 12 of 12)	B4A|SINE|B4	20624.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	3.39386004667992	3.30923093659013	3.90728886065262	3.56193260256047	3.647210351356	3.74229566819982	0.332260193768264	0.586665882952155	0.875615538765309
Merged-chr17-5784146-4	chr17	5783631	5784631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14526.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.78637848936658	5.82180721260666	5.69316782250243	5.81611602340696	5.94166124286517	5.728491102292	0.120269827584617	0.69469122292679	0.919217788511748
Merged-chr4-59822259-4	chr4	59821702	59822702	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	RMER6A|LTR|ERVK	16552.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.81275991795514	4.86834811560173	4.5509866373559	4.74550457539973	4.7530015142737	4.23053592304681	-0.343203697766598	0.451667204297047	0.809233899859178
Merged-chr2-73554601-4	chr2	73554098	73555098	+	877.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25111.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.99548773678075	5.85032380337314	6.02305496043875	5.84823602429392	5.95932324930177	6.20834737769607	0.089065995113101	0.769144393309559	0.943019577969849
Merged-chr16-5202330-2	chr16	5201830	5202830	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027804, intron 1 of 8)	B4A|SINE|B4	1682.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	3.36974477077567	3.20531430093176	3.20276814713432	2.85177240923811	2.86964099700781	3.27438864642205	-1.15067051464483	0.10211766081669	0.426111190513952
Merged-chr5-24908947-4	chr5	24908438	24909438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170556)	promoter-TSS (NM_001170556)	-429.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	4.16740159646038	4.45598720770072	4.47238582554716	3.9900140201816	3.50649965110856	3.74376619804597	-1.85039483498617	0.00078127153249575	0.0149101013018134
Merged-chr3-103735085-4	chr3	103734484	103735484	+	855.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133859)	TTS (NM_133859)	3017.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.71654053555765	3.74141677806518	4.17612088097234	4.28113380539257	4.25762921578354	4.01003594126634	0.914471210944886	0.0810213935134635	0.376661675724458
Merged-chr8-120599736-4	chr8	120599237	120600237	+	856.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-10662.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.12726337556771	3.01495292093457	3.28839283929654	3.27235965285011	3.57694403489328	3.57330386281585	1.38379594059938	0.0306058401235916	0.211558942778361
Merged-chr18-12938389-4	chr18	12937887	12938887	+	894.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	3454.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.75897986804874	5.21294512096664	4.90987372833433	5.06755634958288	4.96007726055112	5.01182643662924	0.0659962302883792	0.866678718425044	0.969114221403526
Merged-chr1-191576042-4	chr1	191575532	191576532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029766)	promoter-TSS (NM_029766)	396.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	6.52414392570766	6.6224748897622	6.65488505214004	6.45943635650075	6.48463129726985	6.33981258324313	-0.264165572517791	0.314507643640173	0.708849744947754
Merged-chr18-68058530-4	chr18	68058036	68059036	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	125363.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.89355265539835	4.98799262308818	4.18562886876349	3.96133470939042	3.58274147601621	4.30679053510214	-2.04518878623114	0.000425132007944148	0.0092385437756638
Merged-chr2-104110285-4	chr2	104109784	104110784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12485.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	4.53102021224152	4.18295962774566	4.5452463361216	4.13299078263331	3.74998892495935	4.19355405942958	-1.10039694209752	0.0308768872313893	0.21267589753933
Merged-chr13-52962581-3	chr13	52962091	52963091	+	882.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	18448.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	3.58652797849627	3.54804511342053	3.68361966359417	3.81679060303667	3.4935824631656	3.53889736007002	0.0707743781814168	0.900564846102317	0.976863206592207
Merged-chr5-135476420-4	chr5	135475939	135476939	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	68683.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.12792399470788	5.80532565958332	5.87450358084822	6.0011828688275	6.20168725341653	6.0771445072383	0.264014549191037	0.383610627855287	0.76494131641868
Merged-chr6-50114443-4	chr6	50113946	50114946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	3586.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	6.14358604136396	6.51021519007222	5.94368731482176	5.9897171166042	6.19299899655219	6.20956129653532	-0.167124990619635	0.595251713104789	0.879433674432232
Merged-chr15-98928742-4	chr15	98928254	98929254	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GCTTG)n|Simple_repeat|Simple_repeat	5636.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	4.20571447688618	3.98924612799784	4.29052767175135	4.40103389310713	4.51502382188512	4.17246080357715	0.588675144764395	0.213932566436858	0.607069313663926
Merged-chr17-13685837-4	chr17	13685341	13686341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74700.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	4.00831124015857	3.67626993162865	3.7207308734174	3.49691559136378	3.84385486134246	3.62880005941421	-0.463482047096932	0.418274732516301	0.788588731807313
Merged-chr9-99492908-3	chr9	99492428	99493428	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	22507.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	6.38383225402846	6.45903488319223	6.28693398628465	6.33978595371048	6.95183846166023	6.48336459036558	0.401676393569909	0.186617793284704	0.571305862532512
Merged-chr3-94583649-2	chr3	94583149	94584149	+	963.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-933.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	6.16291917377959	6.30236257756171	6.22239113119621	5.74355548849286	6.06347005655623	6.11691115254354	-0.422142252317563	0.156890569440229	0.527761038035113
Merged-chr4-156199741-2	chr4	156199241	156200241	+	921.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_015783, exon 2 of 2)	exon (NM_015783, exon 2 of 2)	1077.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	4.27315847368153	4.24665794468629	4.02990735779555	4.32528306438609	4.17746483805786	4.33651718750492	0.221011250536309	0.63661932627595	0.89720767300409
Merged-chr19-41997961-1	chr19	41997461	41998461	+	770.0	f0_balb.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	16198.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.18182733489729	4.46658855440821	4.44036119077721	4.55415263312164	4.30460887935415	4.58821426009643	0.290016380361028	0.521454159560644	0.847076250198493
Merged-chr3-40526267-3	chr3	40525731	40526731	+	804.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3319.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	3.31523612496173	3.17260302107265	3.23083997596129	3.52296309684522	3.50413580103112	3.58249964974214	1.14361965629315	0.057070188286363	0.308056842486649
Merged-chr16-25805128-4	chr16	25804634	25805634	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127262, intron 1 of 10)	intron (NM_001127262, intron 1 of 10)	3218.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	3.66916321206464	3.16051633977082	3.37388964824472	3.76733010259111	3.48965557386472	4.00679101679061	1.19337031096553	0.0639966743264855	0.329743964168568
Merged-chr5-143472894-3	chr5	143472400	143473400	+	820.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	8407.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	5.11031550980122	4.60950322813611	4.87637608542254	4.67244187141414	4.86871505066062	4.7106808874907	-0.279391058488071	0.505560526676198	0.838177729332582
Merged-chr16-21666683-3	chr16	21666187	21667187	+	948.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	27978.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.32315825750444	4.36481680354706	4.17278030172929	3.74191408063502	3.88509003328413	4.05228824636998	-1.17309851030562	0.0183875760453361	0.152941212821122
Merged-chr14-45668670-2	chr14	45668170	45669170	+	740.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10527.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.73583453608614	4.5849605959601	5.11216733771096	4.91387713190779	4.86440413549524	5.01398205681299	0.250356689415052	0.541376302361053	0.856830803260814
Merged-chr11-120518281-4	chr11	120517794	120518794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12433.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	7.97808061683487	7.87398284024782	7.83025917089837	7.9323370878306	8.23006074116471	7.7386509776555	0.135268183085517	0.572245282746946	0.869807909725036
Merged-chr13-21453645-4	chr13	21453156	21454156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013786)	promoter-TSS (NM_001013786)	71.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	7.02295399507761	7.35719959366371	7.00300940358278	6.97810385204011	6.85802963688097	6.64501437599953	-0.463499454760735	0.0821731824634537	0.379123019025808
Merged-chr3-95882434-4	chr3	95881934	95882934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-206.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	6.23221241372842	6.01102548376473	5.72898990286497	6.37324698316012	6.08238328312964	5.84741182864672	0.183834754185306	0.578972443863106	0.872437129840066
Merged-chr11-40692667-4	chr11	40692177	40693177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134017)	promoter-TSS (NM_134017)	5.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	6.8602653608348	7.05788849295737	7.06188448934781	6.87825811147425	7.02618304028904	6.90356177742078	-0.080727925082592	0.743923505906753	0.935814517574594
Merged-chr10-26799043-4	chr10	26798553	26799553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	26541.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	8.40990495646987	8.23920834503338	8.03403613622757	8.06498511952817	7.98535388151146	7.82743821764332	-0.389229876264686	0.0874942265233915	0.392189818486148
Merged-chr13-111968762-4	chr13	111968266	111969266	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100830.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	7.42535041571563	7.61090243912607	6.83463753138968	7.02611792713556	7.38288323590722	6.57392155585774	-0.433588883217889	0.197911402592428	0.586043439320662
Merged-chr17-27051127-2	chr17	27050627	27051627	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6177.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	4.89560792490233	5.40774471585065	5.09664169468829	4.53365717294495	4.24880469092788	4.84974944983551	-1.36496657002626	0.00227433510753544	0.034085532353712
Merged-chr19-10839690-4	chr19	10839203	10840203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2841.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	4.24142425906746	3.83255682960841	3.95259705978255	3.79831380427791	4.13309970488347	4.33798795347583	0.232236393641203	0.664506413370319	0.907620644184464
Merged-chr17-63872969-2	chr17	63872469	63873469	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-5097.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	4.88934881369025	5.15866748785223	5.36802407580781	5.20671863061005	5.27754253804065	5.11709927773409	0.132018115137244	0.724560448258867	0.929435720851808
Merged-chr19-37207562-4	chr19	37207040	37208040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	-5.0	NM_027314	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	8.70880653424092	8.77485681318244	8.60971477276781	8.90619230655505	8.95933164886527	8.72347573614587	0.232072321116346	0.253859178439042	0.651117231535132
Merged-chr5-105110544-7	chr5	105110077	105111077	+	998.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153378)	promoter-TSS (NR_153378)	-285.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	6.96470934700857	6.77858132591418	6.66957190494257	7.22785975505735	7.10728732987967	7.04336635785179	0.47859034967741	0.0571022957553547	0.308130209157688
Merged-chr15-77773761-2	chr15	77773261	77774261	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 24 of 40)	intron (NM_022410, intron 24 of 40)	-16751.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	2.78269898191934	2.63846971388224	3.00331235597395	2.54092000726387	2.31989306118494	2.79016936705584	-1.42201211691531	0.0989168812229591	0.419376126199938
Merged-chr2-60874765-2	chr2	60874265	60875265	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	(TG)n|Simple_repeat|Simple_repeat	6673.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.12039942770464	3.32364282918363	3.53516976703153	3.34038141133918	3.20348468681118	3.23011169261326	-0.292086063625303	0.646146412562122	0.900928760057729
Merged-chr8-12757463-4	chr8	12757006	12758006	+	720.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015804, intron 1 of 28)	CpG	490.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	4.48246720531928	4.45688314593373	4.32995935396934	4.63778875755086	4.14054862044728	3.8780245576474	-0.421986856511569	0.41914646604375	0.78883406136263
Merged-chr10-83645201-4	chr10	83644693	83645693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 1 of 20)	intron (NM_145220, intron 1 of 20)	3471.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	7.37440212335002	7.43370089906871	7.28987775996623	6.81582486632382	6.7719584228831	6.65706278064523	-0.934694421729277	0.000100916436337681	0.00285711290737861
Merged-chr11-114682791-2	chr11	114682291	114683291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	7323.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	5.32727759236499	5.32646931851153	5.44396643805339	5.66130897209647	5.79994634451575	5.6213605719658	0.646633423016785	0.045807007097064	0.270414713002574
Merged-chr1-36086775-3	chr1	36086291	36087291	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	18391.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.47193215080309	5.71830558480637	5.46527525609212	5.22003281794475	5.40098559059003	5.46961471985658	-0.380390064156454	0.264010281481787	0.661879105198449
Merged-chr13-81109925-4	chr13	81109441	81110441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145867.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.85709709346888	6.95538274815323	6.35620071426218	6.5736604863811	6.76023194518979	6.69188749476613	-0.129679662410442	0.654363933842664	0.903757094238939
Merged-chr10-61423029-4	chr10	61422546	61423546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5074.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	5.02717510473491	5.28815686006054	4.93472087010965	5.09284564080335	5.37561785284991	5.2465409833675	0.29951068779279	0.423656842217769	0.792082736807957
Merged-chr7-19476287-2	chr7	19475787	19476787	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-17793.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.7918507197169	2.84929848876748	2.8100976128967	2.95025137645531	3.10028177321063	3.17498401024149	1.26842740980171	0.0692740632395894	0.344435917102623
Merged-chr7-19358903-2	chr7	19358403	19359403	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145822, intron 2 of 2)	B1_Mur4|SINE|Alu	580.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	4.60844249763206	4.4037547793129	4.61611127939486	4.85437788478824	4.36889679920488	4.55988679758251	0.156228824181514	0.72529029784186	0.929616950952244
Merged-chr1-150395812-3	chr1	150395331	150396331	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133780, intron 3 of 51)	RMER6B|LTR|ERVK	-2751.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	4.01420364933807	4.13154267583156	4.2270759516602	4.15525798605151	3.85149497903847	4.25075638585071	-0.104158871176869	0.834411544226423	0.961299492933729
Merged-chr7-142392676-1	chr7	142392176	142393176	+	696.0	f1_balb.idr	Intergenic	Intergenic	-4806.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.25796538778477	6.87229024418577	6.9083204488515	7.42556859658457	7.44526537442049	7.38083347938988	0.579795609360341	0.0210806666776964	0.16717981851587
Merged-chr19-45017510-4	chr19	45017019	45018019	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-616.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	6.46725410300619	5.64794112995476	5.69886212550356	5.7190797875037	4.86026646019184	4.85795998380901	-1.43853421977076	0.0616441633531673	0.322110496375932
Merged-chr5-3802310-2	chr5	3801810	3802810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	814.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	4.62615945798218	4.53185264896469	4.40960149392804	4.55202810777571	4.44955532772117	4.47739201821498	-0.0973509641275378	0.819204851186984	0.957209935971094
Merged-chr1-36308781-1	chr1	36308281	36309281	+	550.0	f0_balb.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1048.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	5.58605489992004	5.55687012288887	5.33680155446586	5.13136794843575	5.18207440487348	5.1696969152043	-0.682409932141615	0.0474054519484898	0.275778215572113
Merged-chr12-100188260-3	chr12	100187756	100188756	+	883.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045282, exon 1 of 3)	non-coding (NR_045282, exon 1 of 3)	288.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	7.27124428993808	7.29700099615368	7.11717078612715	7.20601316799711	7.62270317325922	7.02633407566927	0.131804229505347	0.626803063633125	0.892958537825689
Merged-chr9-121705048-5	chr9	121704579	121705579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178677)	promoter-TSS (NM_178677)	-50.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	7.98809742915865	8.25786444856141	7.80888950944042	7.80603062843529	7.8879252808885	7.74291068754839	-0.316261346409922	0.178786229475504	0.560118041416111
Merged-chr9-44652185-4	chr9	44651681	44652681	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21052.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	2.88455888423705	2.96415287924946	2.63235804669153	2.75662427999006	2.69792933788121	2.95840884873106	-0.174495172435401	0.817011510249416	0.956754861188725
Merged-chr10-93267730-2	chr10	93267257	93268257	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	43402.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.20209050184763	4.67999410262691	4.63395722214506	4.07472462802584	4.36638624602008	4.54544653973864	-0.462734738257456	0.340053449737107	0.72967866276074
Merged-chr8-24715356-3	chr8	24714858	24715858	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324489, intron 5 of 21)	intron (NM_001324489, intron 5 of 21)	10494.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	3.31363034054329	3.36075895716793	3.13904185915436	2.8989669544081	2.8041935406524	3.21163526270346	-1.38505580711593	0.050447853876194	0.285827660719757
Merged-chr11-95384666-5	chr11	95384250	95385250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-106.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	8.02716097210864	8.29340440495255	7.59887768859654	8.03349565349222	8.29445166476022	7.58316416561028	-0.000258513997932481	0.999304997006705	0.999917868500955
Merged-chr9-123021319-4	chr9	123020849	123021849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025339)	promoter-TSS (NM_025339)	23.0	NM_001164823	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	5.93626960696456	5.66785807533867	5.71600937601418	5.519403190215	5.59448333061162	5.67206984802248	-0.345630840705136	0.278975455708768	0.676449294675764
Merged-chr6-136825537-2	chr6	136825037	136826037	+	672.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021714, exon 3 of 12)	exon (NM_021714, exon 3 of 12)	2679.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	4.17548467211579	3.72764187170907	3.98559790694199	4.57673977734781	4.61152059260796	4.4379530354156	1.55432736555711	0.00169156191352562	0.0271343188105393
Merged-chr11-101643762-2	chr11	101643262	101644262	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15813.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	3.67546600112366	3.68726372382424	3.76013670668004	3.80604381869263	3.79038156356098	3.97545831563507	0.485431620428774	0.354943569467327	0.741970720468217
Merged-chr15-25862144-4	chr15	25861649	25862649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	18851.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	3.95703924956485	3.6479636873218	3.69203294223763	3.97417463736474	3.82515724260257	3.91942803664858	0.404418266324592	0.447596240290289	0.806548958484392
Merged-chr19-25058031-4	chr19	25057534	25058534	+	975.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	58505.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.60526552430567	4.80997873278602	4.51111145221877	4.48255388440631	4.33251152484284	4.4480396712031	-0.587805540321033	0.172191489675782	0.550769180938819
Merged-chr7-28439563-2	chr7	28439063	28440063	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290550, intron 1 of 5)	B1_Mus2|SINE|Alu	-1374.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	3.42840356943872	3.44302973413739	3.43602189580773	3.35969000441261	3.27210686490587	3.61103469803068	-0.0864887356203633	0.88487107183395	0.973538624783452
Merged-chr7-121070568-3	chr7	121070097	121071097	+	745.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030691, exon 2 of 6)	exon (NM_030691, exon 2 of 6)	3933.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	3.76227509088586	3.45993073288788	3.73635864202736	3.66230623539252	3.51444752533596	3.94825008150686	0.183399418410697	0.750241739539974	0.937550343416037
Merged-chr6-140767858-4	chr6	140767360	140768360	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140975.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.38302502098572	6.23466109227427	6.54557987691349	6.55615857540458	6.70651962239465	6.46382215137661	0.325482871294408	0.236260168063386	0.632649498304448
Merged-chr16-33347339-4	chr16	33346821	33347821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33415.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	6.74478299619971	6.77542746275075	6.55678754553248	6.92802259648129	7.41104093487114	7.02170426531045	0.682765298566309	0.0128667729032604	0.120099525784954
Merged-chr3-116857826-4	chr3	116857328	116858328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1739.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	6.58574510240603	6.74139281518945	6.71420336170592	6.4756164683039	6.51575381584684	6.4886312159214	-0.297813015604417	0.2482542987073	0.645442559893669
Merged-chr16-33397272-3	chr16	33396764	33397764	+	918.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	-3181.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	3.64719861707762	3.58098806241842	3.64128866600469	3.58429453448286	3.6271694125804	3.65883649303718	0.00146855319169354	0.997854938990472	0.999572789544564
Merged-chr10-15294322-3	chr10	15293792	15294792	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-497485.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	2.53563430622632	2.71340900657876	2.53681396908543	2.64672195223623	2.4596790698005	2.85762135854239	0.327249288398513	0.680642862400748	1
Merged-chr3-108382020-6	chr3	108381526	108382526	+	954.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	1715.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	6.63508939244904	6.25047844969691	6.22258584991878	6.78335750942489	6.67572036989319	6.32597201249949	0.364251581371343	0.226637077515229	0.62156609505752
Merged-chr9-14244600-4	chr9	14244086	14245086	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31715.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	4.58430887635974	4.45809314475474	4.35106496875628	4.31335502675973	4.1253225513685	4.28303257115829	-0.628609682178971	0.16361258296816	0.537647883161994
Merged-chr14-61666061-4	chr14	61665560	61666560	+	954.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	16313.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.17507069742986	5.09543925959695	5.12550854765793	5.18918028946061	5.15637889750988	5.31745680708489	0.172766122243252	0.624307374088419	0.891938118905052
Merged-chr18-46599069-4	chr18	46598539	46599539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	1335.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	7.69914906649	7.74975702748267	7.32103395395249	7.93861679280432	8.30697958566611	7.59868597409665	0.543718507206008	0.0529080816862245	0.294591519067677
Merged-chr10-122562682-4	chr10	122562173	122563173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7218.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.41520716882765	6.57415736552467	6.65466988964227	6.89159947718219	7.21578552799567	6.77772048428457	0.685265681462633	0.0121243382244255	0.115098341476419
Merged-chr13-20128308-2	chr13	20127808	20128808	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37801.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.77587891314066	6.05730711650192	6.00004343005112	6.0984753597777	6.08850700877772	6.45210928955676	0.454330541726829	0.139534642133184	0.499131433621496
Merged-chr10-68248143-2	chr10	68247643	68248643	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	30583.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.91466094544099	5.8675466015236	5.84410964643171	5.61880909189072	5.34485203776765	5.59287209359989	-0.666205715110368	0.0360891276751114	0.23363449277139
Merged-chr13-12256570-3	chr13	12256052	12257052	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	1561.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	7.1894309616095	7.54987217294504	6.78553804760794	7.49991336336165	7.85253387565969	7.01819323077011	0.425273012544156	0.197939679101383	0.586043439320662
Merged-chr4-129791767-2	chr4	129791295	129792295	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-28684.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.64338903144879	4.75218271138377	4.86557809460733	4.62961793932477	4.64556084620205	4.85905409414574	-0.101088082165279	0.80268868816806	0.953313831733603
Merged-chr2-131321506-3	chr2	131321041	131322041	+	828.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178607, intron 1 of 5)	intron (NM_178607, intron 1 of 5)	31351.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	3.67618371840293	3.49217107352083	3.46684355208877	3.1581888650282	3.14706670645285	3.42855013459617	-1.22317242861231	0.0495910160761489	0.283229409407934
Merged-chr1-154061515-4	chr1	154060986	154061986	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-139701.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.94244307174265	4.23995844176023	4.0114490565971	3.7596393986926	3.78160122866134	4.21521620323306	-0.443146024190521	0.404633025393262	0.779747209915063
Merged-chr7-3825756-1	chr7	3825256	3826256	+	662.333313	f0_c57.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	19295.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	4.08634544635106	3.98622253098924	4.06626484324642	4.24937924607737	3.89415509748948	4.13494191718329	0.143912512018845	0.771051904465573	0.943565600102578
Merged-chr8-31112422-4	chr8	31111941	31112941	+	869.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	595.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	5.38933904169488	5.71106994326631	5.60806233527163	5.91019532096824	5.73764493722995	6.0768038501994	0.598365617382218	0.0680214151643579	0.341313314011992
Merged-chr9-116085502-3	chr9	116085000	116086000	+	663.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89863.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.65635180118742	5.77177720307483	5.68792387597862	4.94691838409513	4.98684647358474	5.23311039935051	-1.29952671377202	0.000162212215807721	0.00423114547113756
Merged-chr5-144254961-7	chr5	144254411	144255411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018772)	promoter-TSS (NM_018772)	-314.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	6.94971225903932	6.47898682753559	6.52840579396505	7.12696926483471	6.63631790411312	6.19543498801524	0.0676609630360271	0.844699132199021	0.96373428957366
Merged-chr10-59268258-4	chr10	59267751	59268751	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	46329.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.44847768232085	5.45025574856152	5.30730593123625	5.96252356383005	5.92444565041377	5.75689775368495	0.883864102247821	0.00554738138390415	0.0659126817352415
Merged-chr2-38291678-3	chr2	38291168	38292168	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4284.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	3.53314439752413	3.4397419775114	3.51228126602242	3.14982038078514	3.03895436807006	3.25245725182152	-1.47290957439253	0.0197410684273406	0.160083307835704
Merged-chr17-30012521-2	chr17	30012021	30013021	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	7482.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	2.68422356659241	2.57603871654186	2.58728675025119	2.71661691437938	2.90678808321845	3.14000330562264	1.63338111658009	0.0348201542878755	0.228892036497515
Merged-chr3-121953199-4	chr3	121952708	121953708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172525)	promoter-TSS (NM_172525)	-21.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	3.55434543538922	3.68353502926451	3.75632257239381	4.10832959940455	3.78709438083413	3.77458720421594	0.769113043540616	0.156810336891434	0.527644132904867
Merged-chr17-46253868-4	chr17	46253389	46254389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111142)	promoter-TSS (NM_001111142)	-276.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	4.2562237049959	4.00460247325749	4.13664626468029	4.4459934894087	4.1741150296274	4.00558515832913	0.24686776242956	0.615790813674913	0.88811014762473
Merged-chr5-123253428-3	chr5	123252951	123253951	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25261.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	3.31768701052998	3.50518714098123	3.58357868545378	3.2175391217582	3.14245844330607	3.33598088781992	-0.966847692213361	0.118290057415893	0.459530281407237
Merged-chr15-66785642-4	chr15	66785148	66786148	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 6 of 7)	intron (NM_001029841, intron 6 of 7)	46181.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.55346811554892	4.65916505645328	4.51788395153276	4.62523412619762	4.9956921825006	4.71091978025486	0.504508824084285	0.228798272395202	0.624086141348775
Merged-chr16-27344866-1	chr16	27344366	27345366	+	545.0	f1_c57bl6.idr	intron (NM_198112, intron 3 of 4)	intron (NM_198112, intron 3 of 4)	25373.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	2.51059556618282	2.92949985421007	2.49098237600369	2.8253912293051	2.71489030515857	2.95094545301219	0.857283277416467	0.30453800672128	0.700969682849711
Merged-chr7-101214003-3	chr7	101213507	101214507	+	922.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	88081.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	3.76727276878942	3.95859272993173	3.6753053547871	4.47787218108305	4.51779077697453	3.98118464698277	1.56096040528032	0.00380190877109686	0.0500394218641929
Merged-chr10-80174195-2	chr10	80173695	80174695	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027207, intron 1 of 2)	intron (NM_027207, intron 1 of 2)	1251.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	3.72766883312765	3.68420184663978	3.7294308231632	3.70535387938601	3.79919106440005	3.7990684180878	0.185258441727609	0.725287164512365	0.929616950952244
Merged-chr7-45052479-2	chr7	45051979	45052979	+	885.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175022, intron 1 of 13)	intron (NM_175022, intron 1 of 13)	402.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	4.90372133433342	5.03126757231805	5.36406594104423	5.26395941372239	5.16022188262812	5.24737538777512	0.25044817521707	0.501987524494049	0.836173561910212
Merged-chr7-101541297-4	chr7	101540778	101541778	+	878.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14524.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.85055769864437	6.87468127522543	6.25858268856941	5.47561694503133	5.74175030079922	5.61383015464243	-1.83027090539332	2.628203026406e-08	2.17420219256328e-06
Merged-chr2-33283257-2	chr2	33282757	33283757	+	626.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 4 of 16)	intron (NM_001290570, intron 4 of 16)	67296.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	2.76388838637519	2.75997669028064	2.78183839514411	2.83512101261374	3.19644539343202	3.15416747471828	1.49270223056728	0.0393034065763176	0.246095105305308
Merged-chr17-31520058-4	chr17	31519548	31520548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-67.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	7.50744815125043	7.59062551232353	7.46534709277525	7.7347681792757	7.74446281609132	7.55260752059213	0.233059945869197	0.296588105484073	0.693171366955017
Merged-chr13-101843779-3	chr13	101843294	101844294	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-75577.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.83124640768468	6.0612557117188	6.08445807867782	6.03809207681149	6.26887520055498	6.12339812717094	0.272424921879194	0.357476766437092	0.744062225368359
Merged-chr10-87830868-4	chr10	87830353	87831353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-27412.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.38092012901143	7.28561003317518	7.49949009511566	7.41148831727233	7.78710668218669	7.41201076309276	0.250075305402575	0.312846943227802	0.707527953144678
Merged-chr9-108053656-2	chr9	108053156	108054156	+	652.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177275, exon 1 of 1)	exon (NM_177275, exon 1 of 1)	497.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	3.72348967852169	3.50685248236912	4.26440692947302	4.18165009146035	3.57806743473059	4.20820745351684	0.445092903178915	0.474876814950581	0.821709610048619
Merged-chr9-50499105-4	chr9	50498611	50499611	+	790.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029639, exon 2 of 4)	exon (NM_029639, exon 2 of 4)	4586.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	2.63469406095635	2.49872396512303	2.53293401412806	2.64101537057619	2.67093577420557	2.73344064703675	0.696268606548425	0.360513791867594	1
Merged-chr6-137405910-4	chr6	137405413	137406413	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-4808.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.15433280392022	4.09575508311416	4.51164782330659	4.07180626831671	4.22730240304144	4.01036074944553	-0.396655356592429	0.422270632509195	0.791122788290353
Merged-chr13-75823912-3	chr13	75823424	75824424	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-15961.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.1263036344649	6.34607368690165	6.62284936156567	5.9945065610245	6.09951112020467	6.09956501537639	-0.512913171079552	0.087797550638514	0.39314705594282
Merged-chr13-81741224-4	chr13	81740717	81741717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	29800.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	4.54085704832494	4.80399545832123	4.81214180165334	4.38887608160038	4.12075558286418	4.84181523558135	-0.607295150086352	0.203248405376129	0.593108413920774
Merged-chr5-38684662-4	chr5	38684142	38685142	+	987.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081144, intron 1 of 3)	CpG	184.0	NM_001177902	100515.0	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	3.11509494380994	3.031077861679	3.41816946675919	2.91007228387464	2.85676205513713	3.11546542078376	-1.0564543856643	0.128815645668481	0.479875190042216
Merged-chr5-23493413-4	chr5	23492914	23493914	+	782.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026984, exon 16 of 26)	exon (NM_026984, exon 16 of 26)	58985.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	4.04955511673476	3.99477582534526	3.8703122652848	4.01010568797965	4.10546592348762	4.47705960887292	0.645381202319624	0.202924296711054	0.592772302593993
Merged-chr11-103419360-4	chr11	103418860	103419860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6696.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	7.72031993463222	7.25621788156661	7.50446954013648	7.97484014291992	8.13633188785328	7.53044068361441	0.583015664064002	0.0330262935875246	0.22156347954775
Merged-chr16-43364317-4	chr16	43363829	43364829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	55867.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	6.13723193435417	6.25759316649599	6.45987034029324	6.37056795965643	6.45501100531117	6.21171980275748	0.123027414461677	0.665086557768608	0.907732432508614
Merged-chr11-69031214-3	chr11	69030742	69031742	+	885.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281464, intron 14 of 22)	intron (NM_001281464, intron 14 of 22)	-14395.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.83632737697987	5.73346743750032	5.82958193814365	5.70797429346769	5.77748516774637	6.00630584229446	0.0535620922164854	0.862291314561807	0.967996224966109
Merged-chr10-93311343-2	chr10	93310844	93311844	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013508)	promoter-TSS (NM_013508)	-185.0	NM_001322265	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.10252544362167	3.93115396268616	4.51981006484508	3.46382858362521	3.43812608719257	4.02886460786189	-1.68232511434939	0.00606530539751096	0.0703095474388537
Merged-chr9-77751315-4	chr9	77750810	77751810	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3225.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	7.4255397640406	7.71479837641258	7.54862212198763	7.46020198782078	7.34597631585782	7.4766211919051	-0.21182288837378	0.362620024954782	0.748131388669696
Merged-chr19-32665469-4	chr19	32664946	32665946	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011864, exon 13 of 13)	exon (NM_011864, exon 13 of 13)	45441.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	3.45596723740283	3.62431003776584	3.81791824255958	3.9284480568876	3.95554357750923	3.56589615932758	0.66353214737481	0.244941391445413	0.642357387785736
Merged-chr11-32563810-4	chr11	32563301	32564301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	30535.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.89420452200771	6.80921121190537	6.47822934962815	6.6445397404208	6.85429060083369	6.29403203460048	-0.182040641836812	0.542093499688162	0.857034750433211
Merged-chr11-70587181-4	chr11	70586670	70587670	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	RMER15|LTR|ERVL	24289.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	6.55585601887264	6.51885400283178	6.64236486925092	6.87935837440091	6.97437088496346	6.76507912737054	0.493644362051188	0.0514118367595402	0.289143366886639
Merged-chr16-20309634-4	chr16	20309078	20310078	+	876.7041630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183158, exon 9 of 9)	3' UTR (NM_183158, exon 9 of 9)	-7216.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	4.71003990774038	4.6322480232271	5.0417263170076	4.6681023401916	4.62601970524383	4.83486648857425	-0.205604900332665	0.620339443998438	0.890068302891401
Merged-chr6-83655527-2	chr6	83655035	83656035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 1 of 6)	intron (NM_016751, intron 1 of 6)	581.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.02581998162322	7.31373965701518	7.31853114088604	7.29991767308423	7.39473384965499	6.85230312365247	-0.0147946731430618	0.956703403349779	0.989887454023164
Merged-chr4-43444092-2	chr4	43443592	43444592	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011571, intron 3 of 9)	intron (NM_011571, intron 3 of 9)	1815.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	4.12496027554941	4.06400556923345	4.35847016706309	3.80559039131043	3.92707429160071	4.08082059228547	-0.713160968204487	0.154504056626831	0.523836159179075
Merged-chr8-46928882-4	chr8	46928391	46929391	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57996.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.74105723176021	5.13211614862182	5.48334263007701	5.42151772164128	5.44978734953805	5.39766147714641	-0.102241450490026	0.780118281630084	0.945949149660645
Merged-chr13-93237815-4	chr13	93237311	93238311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45394.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.65334637444024	5.59335613282633	5.90003058965477	5.72385940388878	5.74348999595461	6.26469037478301	0.375140742465405	0.272637387277723	0.669903488087786
Merged-chr4-147336041-2	chr4	147335541	147336541	+	932.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	160175.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	3.62660844989228	3.82251239194802	3.73636874356039	3.81754227089439	3.69197285720316	3.80623005307284	0.12431245149354	0.815520790512663	0.956404475440483
Merged-chr2-30942788-4	chr2	30942269	30943269	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10232.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	6.10196379653432	6.03288355181866	6.1336956577216	5.90507340402789	6.10537564454331	5.94718377164263	-0.158299329061256	0.586491571442559	0.875566335987149
Merged-chr11-118232284-4	chr11	118231811	118232811	+	978.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	16281.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.86257790454621	7.79196457777626	7.15390896163794	7.98634479335927	8.07161797231708	7.31645764253526	0.276482215219647	0.382690145179994	0.764125175224222
Merged-chr14-37135913-2	chr14	37135413	37136413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-591.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	6.16997115743311	6.49314395184604	5.93882080055842	6.28090214760689	6.50616711973374	5.86916852861474	0.0457828877275007	0.892498750225859	0.975146620821922
Merged-chr18-75000574-4	chr18	75000067	75001067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028552).2	promoter-TSS (NR_028552).2	90.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	8.3722936442648	8.20793378944453	7.86917882058172	8.00836270761268	8.07651939370854	7.94156238336505	-0.228188241452052	0.333752100351248	0.724595438241055
Merged-chr10-62582824-3	chr10	62582344	62583344	+	906.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 14 of 14)	intron (NM_019553, intron 14 of 14)	-4387.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	6.42129341458836	6.42090992401941	6.37655089230438	6.55154121357875	6.60546403765229	6.11806467606255	0.0797212329560808	0.782191276346294	0.946479459866999
Merged-chr10-79851473-2	chr10	79850973	79851973	+	697.75	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029447)	TTS (NR_029447)	-2959.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	5.16601174910062	5.21227035876267	5.49058423158309	4.67864017777882	4.73555055184903	5.30628412701225	-0.769256412175924	0.0632716437854332	0.327610885880418
Merged-chr11-69692366-4	chr11	69691872	69692872	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	L2|LINE|L2	3726.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	5.93614248581566	5.81972393270154	6.14138168334839	5.86468370890697	5.65795047577291	5.6028904018437	-0.442946105972726	0.16119803608267	0.533934404934789
Merged-chr2-11212183-4	chr2	11211682	11212682	+	997.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	39800.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	2.36353904222581	2.57769542118591	2.5841432518432	2.55190352750452	2.26572391395786	2.40092268376114	-0.624429493477668	0.456800023054049	1
Merged-chr8-48110113-4	chr8	48109631	48110631	+	872.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027759, exon 1 of 6)	non-coding (NR_027759, exon 1 of 6)	118.0	NM_001161515	320685.0	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	2.34773462096597	2.27590564158997	2.4200792088044	2.14854848210931	2.11031244549047	2.30328045858399	-1.15584251364448	0.189612206140919	1
Merged-chr16-14358727-4	chr16	14358211	14359211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2847.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.86537962065553	4.90761456693033	4.95638221380341	4.82945713090795	5.0077145044681	5.08860291755925	0.152004748321055	0.687968627289002	0.917193226920892
Merged-chr11-74494587-4	chr11	74494094	74495094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	95564.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.84648962656529	5.95573887299666	6.11339861877612	5.87025236645203	6.17462408871289	5.99881333328905	0.101686723000956	0.738004411242389	0.933858424870961
Merged-chr14-64752987-4	chr14	64752452	64753452	+	836.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	100421.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.08218445564993	4.20291946850649	4.03840138772405	3.94844709862087	3.95138504589511	4.37156250254144	-0.0529977177790034	0.915974281286844	0.981201223155309
Merged-chr16-44016386-4	chr16	44015886	44016886	+	958.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153528)	promoter-TSS (NM_153528)	50.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	3.78407008640382	3.73953033779359	3.56712319763387	3.83565612151673	3.97391859517066	4.05110202506848	0.786437082492887	0.139481773984552	0.499084106249493
Merged-chr19-34206363-4	chr19	34205857	34206857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-11151.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.61663347639102	5.28293808143556	5.28162755367613	5.67756238038862	5.27697694559705	5.64023528468904	0.242157421654875	0.502332194642998	0.836446283881744
Merged-chr2-148406491-3	chr2	148406009	148407009	+	761.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	1679.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	3.15890764119114	3.25039089389482	3.69868164139275	3.10182058119525	3.15372393599279	3.20400793051586	-0.932097731580424	0.160547631631889	0.533208683746259
Merged-chr14-14684940-4	chr14	14684437	14685437	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18088.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.18501473117177	4.4851505039223	4.1047531833223	4.22702934135447	3.99530844771824	4.59349201154189	0.0278332743113008	0.956628109342684	0.989887454023164
Merged-chr2-127302031-2	chr2	127301531	127302531	+	772.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31802.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	2.37710461589263	2.44453519182547	2.59663117182704	2.64772469342201	2.42692690081103	2.3438979065466	0.048360336845735	0.953230423114076	1
Merged-chr12-4232510-2	chr12	4232010	4233010	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1455.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	4.74112047638348	4.84495468284297	5.05330650631935	4.86999723582161	4.92924678964326	4.83522132648211	0.0125526953822476	0.974257225982228	0.994260005145451
Merged-chr12-17694993-2	chr12	17694493	17695493	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	ID4|SINE|ID	4184.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.29294998499987	3.24035233970466	3.79984559886299	3.60596148898021	3.28427117565925	3.47116905663144	-0.0109620006815969	0.986360958772632	0.997033990984076
Merged-chr2-128747689-4	chr2	128747207	128748207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	48792.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.51776306445164	7.27406792259798	7.25228726183389	7.07172267875484	7.55004082818368	7.11131042060551	-0.122929934319246	0.646942403432279	0.90114476203283
Merged-chr12-51678947-4	chr12	51678444	51679444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	RSINE1|SINE|B4	-12022.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	6.71914847141421	6.71521756503545	6.50083398860743	6.97749659598747	7.20662695514878	6.75236015277125	0.538074845762833	0.0470685213890717	0.274688820385368
Merged-chr17-71479094-2	chr17	71478611	71479611	+	709.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3768.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	3.29845374030316	3.37823709953285	3.39856137757237	3.72378728348152	3.71766507094133	4.15254911867012	1.82094869578899	0.0022574843651181	0.0338695923282992
Merged-chr14-120480000-2	chr14	120479500	120480500	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1539.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.27731389527244	3.93811917620356	3.98856949003594	3.77798322778729	3.67060641566542	4.10417934045169	-0.688485142240726	0.199042076135671	0.587457129059262
Merged-chr7-19076077-4	chr7	19075559	19076559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-141.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.74258118819461	4.62794801788599	5.01750950584244	5.76411335574037	5.32389722848692	5.59916208844413	1.60503312364794	3.01053132251112e-05	0.00103086539211319
Merged-chr17-40716462-3	chr17	40715982	40716982	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-10638.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	3.47264256431064	3.66617119646198	3.57045984436886	4.06363975909725	3.87720772137955	3.85797330155689	1.20020595675648	0.0277539546282891	0.198830801268517
Merged-chr15-96639264-2	chr15	96638764	96639764	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	MIRb|SINE|MIR	2698.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	7.38321613477433	7.26289459120112	6.86872561832318	7.03696057917166	7.47694749743144	6.86496946745236	-0.0488458996731323	0.869173430684533	0.969777123267097
Merged-chr4-53081002-2	chr4	53080502	53081502	+	682.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 16 of 49)	intron (NM_013454, intron 16 of 49)	69122.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	6.18818808937022	5.88134960947462	5.55937257702136	6.44524583125579	6.55346102038643	5.45480849972619	0.567254280714557	0.391493687858936	0.77052313975368
Merged-chr14-27096492-4	chr14	27095982	27096982	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47511.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.30008995231278	5.38827796477432	5.66782432826468	5.21008193356855	5.44544928282534	5.06750742934831	-0.369883857683926	0.313219099866988	0.707836272539716
Merged-chr9-35056807-4	chr9	35056294	35057294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-59934.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.5277992540892	7.39296252494885	7.60459752840612	7.65797935203895	8.0176079108841	7.95897333524565	0.550938451587159	0.0194808413779695	0.158668935921895
Merged-chr12-40273502-4	chr12	40273011	40274011	+	971.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50147.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	3.49103786720109	3.60804834645949	3.76789401843817	3.48410774597657	3.52576401739045	3.6895332793168	-0.200966215670838	0.722569813462262	0.92882218780133
Merged-chr18-12741283-4	chr18	12740777	12741777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-78.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	7.452466367172	7.63062614318378	7.6312005571834	7.69486739679443	7.95760012241089	7.76748380285964	0.353291516661991	0.122048950815312	0.467328442243354
Merged-chr2-122739312-3	chr2	122738811	122739811	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 1 of 4)	intron (NM_019788, intron 1 of 4)	806.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	7.04948602506677	7.25634221822125	7.01495775212678	6.73951764224933	7.13930808674743	6.85995989497351	-0.277674397549698	0.292971881716701	0.690053425164737
Merged-chr15-12204961-4	chr15	12204452	12205452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-76.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	7.34196651468958	7.11162584811755	6.75295012578412	7.07712669175654	6.81846823860751	6.94911703331414	-0.230210035603641	0.405573115584578	0.780279107725129
Merged-chr1-6499054-3	chr1	6498568	6499568	+	763.366699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244693, intron 2 of 22)	L1MA9|LINE|L1	11837.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	2.77792502143436	3.02834441460662	3.06698346238962	3.21784792510621	2.96431694611919	3.13940527628832	0.66871784726022	0.334069623043229	0.724748007849347
Merged-chr11-97362867-5	chr11	97362393	97363393	+	862.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138657, exon 1 of 10)	exon (NM_138657, exon 1 of 10)	342.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	8.37329242041347	8.21558820915946	7.80516685635302	8.44035886225263	8.1281308088104	7.90429427283757	0.0293286943242448	0.912466522288085	0.980363124210176
Merged-chr1-127204272-2	chr1	127203772	127204772	+	705.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-714.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.84961411644776	3.88796647285905	3.95619123532413	3.70287976149171	3.67030952018097	4.02408338538135	-0.311182683917635	0.556649960885149	0.863705610149867
Merged-chr8-84705520-2	chr8	84705020	84706020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008535)	TTS (NM_008535)	4063.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	3.8579773915498	3.55513815227349	4.30940927077168	3.42237716420532	3.28107074407344	3.83142311479698	-1.36933542806289	0.0338471207329035	0.225002094906402
Merged-chr11-118476890-4	chr11	118476402	118477402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359368)	promoter-TSS (NM_001359368)	70.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	6.77821735566127	7.01836313826182	6.77472168858683	7.14972839022346	7.29075990056512	7.12882332237104	0.49846452295946	0.0450930007708666	0.267911346529259
Merged-chr10-78009364-4	chr10	78008873	78009873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358793, intron 1 of 21)	CpG	434.0	NM_008826	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	7.26235001644985	7.42194695686108	7.20364320896658	7.0060728493126	7.36757167457918	7.28460008839541	-0.107234474541752	0.666905177748467	0.908463623849139
Merged-chr12-56345878-4	chr12	56345372	56346372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145442)	promoter-TSS (NM_145442)	22.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	6.92282628031367	7.19771494686253	6.86029334382409	7.05025246697059	7.17803037719764	7.05934409861683	0.137535638536347	0.585835524755535	0.875131338300747
Merged-chr4-43038031-2	chr4	43037531	43038531	+	910.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2270.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.25635729087733	4.09363265033887	4.09301768409357	4.24513200459235	3.99634095413873	3.96156618557935	-0.220144834044091	0.651980726400344	0.902896807825606
Merged-chr7-127077133-4	chr7	127076631	127077631	+	924.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14305.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	4.58131219751185	4.27985737870612	4.41029186347029	5.2130624943137	4.9802771406196	4.48116777111721	1.1740766834469	0.0104321287469738	0.103485523221054
Merged-chr5-105558787-4	chr5	105558292	105559292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	39321.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	8.68911898701356	8.73718662967303	7.92229127108077	8.66700675927883	9.11699393231306	8.26157403438492	0.315722722284161	0.32357704697842	0.716793539347754
Merged-chr18-33214838-3	chr18	33214341	33215341	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-979.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	5.17110641575294	5.567557504263	4.80638416186797	4.80205771665927	4.75252316677668	4.56481049591386	-1.11361201846284	0.00997671953345159	0.100180302997093
Merged-chr9-85401307-2	chr9	85400807	85401807	+	785.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74157.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.15276544171817	5.19972563998154	4.72913581858907	5.7124730956932	5.64852090872291	5.09219239575512	0.923081786550066	0.0238063354689271	0.181249662521592
Merged-chr2-30966568-2	chr2	30966068	30967068	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	1350.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	7.43836780223537	7.5479169957291	7.25537312510304	7.73386392467549	8.00163557795923	7.49416801372649	0.499257512830068	0.0494862793137954	0.282844781504484
Merged-chr9-116177464-3	chr9	116176967	116177967	+	741.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2104.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.87548375413709	5.85535005035047	5.28113972615467	5.37378026646175	5.47042441380056	4.92017759299434	-0.794044044574208	0.0459262317262903	0.270850513110863
Merged-chr16-32179670-4	chr16	32179148	32180148	+	647.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033539)	promoter-TSS (NM_001033539)	-152.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	3.92545651547356	3.78165960429486	3.73149997141628	3.77110043645472	3.95012641147972	4.18457140123695	0.475735809370603	0.368319055418547	0.753332971910586
Merged-chr10-22353065-2	chr10	22352563	22353563	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	MLTR14|LTR|ERV1	-8831.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	3.74259202339019	3.55867887076314	3.511795338753	3.43256975653242	3.36547120199218	3.52802037191931	-0.636003101374494	0.271389959016777	0.668749953195447
Merged-chr15-72837558-3	chr15	72837038	72838038	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27214.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	6.36151403302213	6.34000503297641	6.17469077975689	6.87146223240013	6.87535005913354	6.8720116629341	0.908155532918867	0.000471667133601995	0.0100424375766369
Merged-chr2-59129673-2	chr2	59129173	59130173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	31010.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	6.84544292058428	6.89066272109686	6.38282373540977	6.41550564157382	6.87098525772217	6.29691090449798	-0.265960700874933	0.401030365322056	0.777158973264623
Merged-chr17-15804581-4	chr17	15804017	15805017	+	966.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22069.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.97606740292543	2.89877927642527	2.92907567361491	3.20083597950602	2.95060363460457	3.12261128552037	0.723669678252635	0.284690326725732	0.682421085006849
Merged-chr12-55155618-1	chr12	55155118	55156118	+	801.0	f1_balb.idr	intron (NM_001100109, intron 1 of 15)	CpG	514.0	NM_001100109	665155.0	Mm.12848	NM_001100109	ENSMUSG00000112449	Srp54b	-	signal recognition particle 54B	protein-coding	2.74362457728107	2.71778078988201	2.91689488649106	3.69545555830643	4.0280720215855	3.56462904387673	7.20761762155972	1.8794546367059e-08	1.60033127096043e-06
Merged-chr7-125624196-1	chr7	125623696	125624696	+	557.0	f1_balb.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	20767.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.33287429129534	5.16720053687283	5.65692280900688	4.47364486071814	4.28073299885474	4.64290671699693	-2.10814898060049	6.40456785307988e-07	3.64757893168426e-05
Merged-chr8-11016750-3	chr8	11016250	11017250	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	PB1D10|SINE|Alu	-8320.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.81932922027658	4.79316513916365	4.6400216353995	3.99608655142985	4.17755427974828	4.12277757778896	-1.70064667016904	0.000204995479128935	0.00511663293316043
Merged-chr2-18676719-4	chr2	18676246	18677246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007552)	promoter-TSS (NM_007552)	-272.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	7.08570172708065	6.4004264743629	6.37867684484879	6.9690074145358	6.06975519413904	6.75212054739717	-0.0335985970747036	0.928265242075456	0.983802612059568
Merged-chr1-191131910-4	chr1	191131413	191132413	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32904.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	4.25989525096812	4.09270475655618	4.54641144387679	4.10287080283634	3.93442756060029	4.1111804465456	-0.719818059817237	0.143998604779283	0.506588698903881
Merged-chr19-44135825-4	chr19	44135323	44136323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356578)	promoter-TSS (NM_001356578)	53.0	NM_001081077	72502.0	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	6.44241624304099	6.67099311379665	6.7643364741406	6.42835753722836	6.50399831448314	6.15187735100249	-0.397263282773267	0.162670240918449	0.536188662408322
Merged-chr5-90964929-4	chr5	90964408	90965408	+	880.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026788, intron 5 of 7)	intron (NM_026788, intron 5 of 7)	33712.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	2.69504886799649	2.65380998582612	2.99013346824364	2.73777748922413	2.63380817889032	2.70839991973918	-0.472214514999076	0.528684836294591	0.850585575598857
Merged-chr2-157428598-4	chr2	157428104	157429104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	4311.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.89104020440225	5.70971218447045	5.90970875290509	5.17292708224542	5.20435145298995	5.19589752845228	-1.23224762213145	0.000205014592336757	0.00511663293316043
Merged-chr5-124027417-2	chr5	124026932	124027932	+	655.0	f0_c57.idr|f1_balb.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	4828.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.12690348086656	4.63203763567354	4.69695822530775	5.69305508007146	5.09498757614364	5.04781635168156	0.981983220162711	0.0251977612872752	0.187906015521742
Merged-chr10-19570389-4	chr10	19569910	19570910	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21539.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.73200309462669	6.55394325419358	6.90397342818012	7.13091593135155	7.24525215995303	7.23915664780336	0.731339597063458	0.0036397268749554	0.0485499188540059
Merged-chr2-160267520-3	chr2	160267026	160268026	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	59968.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.53775149486867	5.69947120612211	5.88424074462687	5.50266003491843	5.86028026271341	5.6463669510949	-0.036957103450165	0.911763914168428	0.980182089643468
Merged-chr16-57116255-2	chr16	57115756	57116756	+	687.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-5458.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	2.5414903533812	2.56723173252947	2.69578166316748	2.52087517642419	2.4893798142775	2.70830956958229	-0.164892611212528	0.830718150254776	1
Merged-chr8-111992270-4	chr8	111991767	111992767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357186)	promoter-TSS (NM_001357186)	35.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	4.76932294968356	4.43193159026167	4.77997554066705	4.97662472258865	5.31052425902524	5.13083229814044	1.07674606263997	0.00769551341992721	0.0836683555444424
Merged-chr19-46485857-2	chr19	46485357	46486357	+	577.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_015752, exon 12 of 12)	exon (NM_015752, exon 12 of 12)	-15791.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.59076954755885	4.49836155121063	4.95153912302484	4.49556105011262	4.54673545721813	4.53897537833322	-0.373767062233527	0.388280233872549	0.76820261821444
Merged-chr17-34883533-4	chr17	34883032	34884032	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1432.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	5.18203963992925	5.22206729973761	5.47518818335892	5.79414936743158	5.06023728511096	5.79294902609204	0.562343181861981	0.158993175727195	0.531006830131991
Merged-chr4-139121164-2	chr4	139120664	139121664	+	768.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	9873.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	4.37759238060353	4.19542663579329	4.277599610713	4.0641804776667	3.60861758618272	4.16749329159446	-0.942606835148749	0.0749256169261372	0.360328906091205
Merged-chr16-8668475-2	chr16	8667975	8668975	+	699.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	3678.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	3.28445991227097	3.59591257713274	3.63306446627826	3.60080913972363	3.14445654860813	3.98204102498943	0.36738110961404	0.584260888486409	0.87456162664244
Merged-chr19-55657032-2	chr19	55656532	55657532	+	619.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	RLTR17B_Mm|LTR|ERVK	45172.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.49011315154532	3.29588155078292	3.71201586861668	3.34026189462227	3.36936624118173	3.18637938970789	-0.756541301185198	0.228626277313982	0.623870247133639
Merged-chr10-8766234-4	chr10	8765783	8766783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	119787.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.73218347397583	5.46586750648185	5.16768436869891	5.17585325760558	5.10672370450984	4.5066922259842	-1.02360488101726	0.0199810355741632	0.161290454797727
Merged-chr17-27961939-1	chr17	27961439	27962439	+	588.0	f0_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	52633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.63644930270575	5.62686985869794	5.27719380322276	4.80521029159599	5.02134371215198	5.27729060398442	-0.989723748960725	0.00830510782669998	0.0883810477099439
Merged-chr16-87654395-4	chr16	87653910	87654910	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44544.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.60709218316977	6.40127513646298	6.25875186820767	5.96302274256028	5.9532322179206	5.65556994362097	-0.948078279334805	0.00181659045157044	0.0286930254924589
Merged-chr4-102588514-1	chr4	102588014	102589014	+	679.0	f0_balb.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	956.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.14929265634424	3.74797513252374	3.94185145361033	4.19657870781293	4.31002099044538	3.85249810018348	0.532722973437414	0.316288658085987	0.710339942934364
Merged-chr11-59164851-2	chr11	59164351	59165351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1106.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	5.63520711269988	5.60968057292825	5.55835042256742	5.42638251251063	5.35048384987449	5.59310579907062	-0.291052001654222	0.372164837925935	0.756099728816208
Merged-chr11-114959220-2	chr11	114958720	114959720	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199225, intron 2 of 3)	RSINE1|SINE|B4	1197.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	2.98868450241835	2.96260331578431	2.84476220153858	3.00529319550324	2.68374386785636	2.97995831303471	-0.206065367374406	0.774944071478635	0.944517829695789
Merged-chr2-33130722-1	chr2	33130222	33131222	+	1000.0	f0_balb.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	-103.0	NM_001355200	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	5.32437760859497	4.48090247874617	5.21539018169899	5.02867333120585	4.87530164280776	5.05316401228115	-0.15528434907928	0.729420730261629	0.930624810693619
Merged-chr15-99421943-3	chr15	99421505	99422505	+	685.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001884)	TTS (NM_001001884)	28786.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.82380662502353	3.53135960925712	3.82777891688737	3.74013160139839	3.93218845908891	3.57757359354275	0.115935468293931	0.837047375136417	0.962035641067236
Merged-chr11-40714070-3	chr11	40713570	40714570	+	970.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013552, exon 11 of 18)	exon (NM_013552, exon 11 of 18)	-18867.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	3.87636396463784	4.0036888185964	4.02257676835476	3.7198942760336	3.58210342411737	3.69315621439224	-0.996153392194448	0.0594808803750456	0.31572372379732
Merged-chr1-138134421-3	chr1	138133912	138134912	+	854.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	40714.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.74225560191778	4.87467479513274	4.46879668235961	4.51775450863429	4.92766021006952	4.93733676584848	0.212880665528511	0.623677526829671	0.891552110895095
Merged-chr8-105637983-3	chr8	105637467	105638467	+	624.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	-493.0	NR_151742	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	5.9044505589022	5.48750680552228	6.05656294687605	6.01189987284209	6.20524337567198	6.36967599044624	0.643232560931184	0.0510301867719129	0.28783848663294
Merged-chr13-73763602-4	chr13	73763086	73764086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011390)	promoter-TSS (NM_011390)	-74.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	5.18366444965174	4.98751771986092	5.44735120954131	5.18292587476988	4.90322965268574	5.28055718834786	-0.180433787937683	0.640493889176228	0.898483031109382
Merged-chr5-146947777-3	chr5	146947395	146948395	+	789.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-762.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	4.64668574890738	4.78996910211081	5.09199598855264	6.08135754557884	6.17833580122342	5.99811738736425	2.4535192910069	2.62029377031899e-12	4.66872385526129e-10
Merged-chr1-138967548-4	chr1	138966986	138967986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181347)	promoter-TSS (NM_181347)	-235.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	5.83388964190793	6.11972427111376	5.7982905960923	6.17598398357649	6.27188122586411	6.2507692682393	0.511129497934968	0.0859127262231624	0.388196028555869
Merged-chr9-21453717-2	chr9	21453217	21454217	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	B2_Mm2|SINE|B2	28809.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	5.62982662690047	5.28497835217101	5.60691827506369	5.22406723370268	5.41494736772099	5.64260918995283	-0.155393515599706	0.661606967411742	0.906493864324557
Merged-chr11-70091692-2	chr11	70091192	70092192	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-952.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	5.57165084454796	5.29319187723903	5.42094604737023	5.17408435879809	5.15538607218329	5.30220354439327	-0.453647692750476	0.192548574595323	0.579601410786647
Merged-chr1-172590608-4	chr1	172590105	172591105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029084)	promoter-TSS (NM_029084)	-37.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	5.61901673206431	5.66653624665263	5.73285740753506	6.02811709328843	6.20103388122237	6.03760068225273	0.756194816445423	0.0113449136786929	0.109983406428601
Merged-chr15-76307410-4	chr15	76306909	76307909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153122)	promoter-TSS (NM_153122)	-164.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	5.86401738469025	5.75919392195214	5.80309169870913	5.53491512005063	5.94666334876353	5.65384764782964	-0.132621257410873	0.68272785430678	0.915212496624716
Merged-chr5-122500206-2	chr5	122499706	122500706	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110140, intron 3 of 19)	intron (NM_001110140, intron 3 of 19)	2019.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	2.896219615111	2.84686864093257	2.89982559206495	2.85817027558094	2.76389050278767	2.72380406365988	-0.491043983656481	0.489733191915559	0.829882480355779
Merged-chr5-150611835-4	chr5	150611328	150612328	+	822.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362416, intron 6 of 7)	L3|LINE|CR1	-17303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	2.44750639353958	2.79515342813781	2.69721008146614	2.76363117063073	2.48692128438952	2.77095423412332	0.119701839784691	0.880923419068196	1
Merged-chr4-130805235-2	chr4	130804735	130805735	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	12698.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.9051879175915	6.09536142105629	6.66183361414332	6.60831940248679	6.66208413196182	6.343479041742	0.490278322234084	0.136896497036425	0.494310206464419
Merged-chr11-78348852-2	chr11	78348352	78349352	+	758.799988	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011676, exon 5 of 5)	3' UTR (NM_011676, exon 5 of 5)	2142.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	2.68734274903875	3.09157341538084	3.35099969232455	2.97900365952937	2.82667570689063	3.3187914338769	-0.0585210657642739	0.939958187969326	0.986753310597155
Merged-chr11-70675265-1	chr11	70674765	70675765	+	761.75	f0_balb.idr	intron (NM_001190379, intron 12 of 20)	intron (NM_001190379, intron 12 of 20)	-5849.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	3.70635831423777	3.76220338351517	4.09293775535439	3.81209444023195	3.43257857952679	3.93717201297422	-0.389820033794935	0.500125037259821	0.834921806675451
Merged-chr18-32241043-2	chr18	32240543	32241543	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133658, intron 2 of 14)	intron (NM_133658, intron 2 of 14)	712.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	4.80359510421935	5.0995893030148	5.34410798045812	5.02467975564281	5.1922895005713	4.99008987819101	-0.0255992260941274	0.947998104267065	0.988024000499268
Merged-chr19-46486881-4	chr19	46486390	46487390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-14758.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.56599965152932	5.16789621059716	6.00983968259734	5.55302251808301	5.40273015284839	5.63493163457332	-0.162630327962073	0.673299727440646	0.911343392668141
Merged-chr1-86228940-4	chr1	86228462	86229462	+	989.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	74182.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	7.16282676530478	7.3220318527316	7.06205316528195	6.68075926218713	6.65513170474352	6.90327399524624	-0.688134301606273	0.00638739174918713	0.0731067153504878
Merged-chr12-51705755-4	chr12	51705251	51706251	+	692.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-13837.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	2.82843420710359	2.59821899432856	2.82234442294843	2.48159518407846	2.49060573641368	2.77650900190642	-0.940577539460984	0.234365040049688	0.630452522567377
Merged-chr16-17797196-2	chr16	17796696	17797696	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-86.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	3.48825289642253	3.35062772401142	3.38838776117406	3.35533166506399	3.25588091236362	3.34718954338843	-0.370555482292682	0.535485701790606	0.853563387841999
Merged-chr10-80700294-2	chr10	80699794	80700794	+	898.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	1526.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	3.2040325530555	3.2390775057024	3.29599343573349	3.35964874039949	3.33373496262318	3.47536749834067	0.573108471431515	0.342643397442481	0.731516324791908
Merged-chr11-89092902-4	chr11	89092393	89093393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033266, exon 4 of 4)	3' UTR (NM_001033266, exon 4 of 4)	19052.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	6.69589951345759	6.45903385132278	6.6865387348645	7.48970101190315	7.20940130400619	7.00152785431669	0.980112687720317	0.000274748623053526	0.00647261705182269
Merged-chr12-85345712-4	chr12	85345209	85346209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-6347.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	8.1636719455288	8.18130522136482	7.9131556036855	8.15645931998843	8.7454267477543	8.00106983781355	0.361415909139826	0.188860406950609	0.574389027923446
Merged-chr6-116172655-4	chr6	116172138	116173138	+	848.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	L1VL4|LINE|L1	20736.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.4719397988429	5.57987437120139	5.51019247211428	5.75758759770275	5.86515712130441	5.41975564595997	0.345407068336452	0.300960073792273	0.697653874358754
Merged-chr14-50939160-4	chr14	50938667	50939667	+	969.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-5136.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	3.82072086269406	4.27459240549653	4.08992070425085	4.392195910565	4.42928370387066	4.4726230428539	0.95132306188072	0.0510310709884762	0.28783848663294
Merged-chr14-30609502-4	chr14	30609010	30610010	+	813.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 2 of 17)	intron (NM_011103, intron 2 of 17)	800.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.41748446387352	4.15327648098972	4.42428946655689	4.23233910582506	4.09443783552634	4.32183364562564	-0.328308404888308	0.481473440998282	0.825111053231146
Merged-chr4-87683045-4	chr4	87682532	87683532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	123291.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.68266886359786	3.54287101975401	3.57280018507325	3.49114296374231	3.63267506565771	3.695269574702	0.0190347531935502	0.972780253677188	0.993881982649774
Merged-chr6-54934066-4	chr6	54933572	54934572	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 8 of 11)	intron (NM_001171007, intron 8 of 11)	37589.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.50539797351139	5.49748768140104	5.66826891426923	5.45422717025421	5.50661885654171	5.89690156400594	0.129132622085082	0.70363920157446	0.922138390420961
Merged-chr9-46028167-4	chr9	46027670	46028670	+	792.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	15350.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	3.79387985199813	3.88850221331899	3.82084229878213	3.49585833179654	3.63694182143237	3.7386659438984	-0.70884194759409	0.190995399009059	0.577558823376959
Merged-chr1-43474725-4	chr1	43474222	43475222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28971.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	7.62529922065623	7.7843781752783	7.50047676130213	7.50734745087747	7.83820863394881	7.60689447816238	0.0243115973733707	0.91903883558952	0.981910789307757
Merged-chr7-101093388-4	chr7	101092871	101093871	+	965.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15404.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	5.53833648353045	5.58838939455967	5.41541026503059	5.26889165804007	5.28026161163159	5.41848838149197	-0.397205681501969	0.234390391617534	0.630476359530347
Merged-chr5-134456080-3	chr5	134455578	134456578	+	705.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	184.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	6.40868137970243	6.22901859279221	6.37091510999922	6.73573687116364	6.4868957632082	6.18252233710143	0.25988847486225	0.376761127044167	0.759376238938963
Merged-chr2-11708630-4	chr2	11708145	11709145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	2933.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	6.2932685957382	6.21193757104239	6.00999608296186	5.86615103678888	5.88314849876628	6.33835398983339	-0.252976322406129	0.420822509172836	0.789927346042947
Merged-chr9-37094312-3	chr9	37093826	37094826	+	923.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	52996.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	3.22104912729269	3.07804345232129	3.51834746887954	2.70822275491971	2.81690506064202	2.80732272672388	-2.48153328351588	0.00149916625352045	0.0247064023812496
Merged-chr4-89524820-4	chr4	89524319	89525319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163379.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	2.42471314447485	2.44664658574976	2.53488945970407	2.36635754844616	2.28434390723561	2.35273863759793	-0.875262418778382	0.287101578701794	1
Merged-chr1-171412256-4	chr1	171411759	171412759	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009480, intron 1 of 9)	intron (NM_009480, intron 1 of 9)	578.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	6.54007368273928	6.61340458878299	6.44577813319047	6.81926502054347	7.15509126982451	6.76537419085805	0.619472889630306	0.0219382809016693	0.17172535063651
Merged-chr13-37889043-2	chr13	37888543	37889543	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	172.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.92294711627698	4.17398331526512	4.33424174109557	3.8991743355715	4.01620622266534	4.14375962050794	-0.369029645642389	0.462108228861723	0.815108250633334
Merged-chr14-30626412-5	chr14	30625884	30626884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-176.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.08338212093082	7.63051438082791	7.97353246938125	8.02273028119662	7.94896016754552	7.86705286642664	0.0575382826582725	0.808884001574415	0.954721853010197
Merged-chr2-75791973-3	chr2	75791412	75792412	+	883.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40265.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.56952326810712	6.56212961116813	6.39756406513772	6.99321108568023	7.0620124639357	6.6252508299414	0.627139628422236	0.0213785878452288	0.168757189775713
Merged-chr3-105721991-4	chr3	105721509	105722509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	6.53439629765748	6.37129954299635	5.92466625908967	6.12607591776975	6.28868617676005	5.82654886982959	-0.345785395822161	0.295116704831241	0.691990077927385
Merged-chr2-127789984-2	chr2	127789427	127790427	+	914.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-1036.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	3.9177794599236	3.55777635850675	3.75699307583101	3.90218212563691	3.92596557478217	3.60732096196801	0.235732682316175	0.672841520985911	0.910966428144718
Merged-chr13-97206850-2	chr13	97206335	97207335	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8478.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	4.49654070636676	4.26149942831773	4.58127289269742	4.74641706579443	4.57545437720249	4.79954164820581	0.630531876818869	0.142135704993473	0.503269265578591
Merged-chr4-109120926-4	chr4	109120427	109121427	+	960.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2891.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.01439705903867	5.44213163847254	5.5671166338509	5.37886594911124	5.5358655744971	5.40358245224249	0.176373343754318	0.629873989800538	0.894408596595842
Merged-chr8-84422287-1	chr8	84421787	84422787	+	687.0	f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	6923.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	4.71901840123559	4.88483107571899	5.02889229928694	3.67689183124547	3.45170856437298	3.80971225427982	-4.05241666940145	5.24689389587846e-11	7.42489026000433e-09
Merged-chr2-154549764-4	chr2	154549267	154550267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029305, exon 3 of 3)	exon (NM_029305, exon 3 of 3)	863.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	7.44514745764981	7.65132933699127	7.14417472053157	7.28846141911467	7.48703761620809	6.98019778142002	-0.235228878188268	0.394364135647889	0.772318089789813
Merged-chr2-120661953-4	chr2	120661448	120662448	+	946.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	52353.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	5.80055011934007	5.75915619774187	5.55424313734076	5.91053367715017	6.02495192460464	5.78580965275799	0.35905876028431	0.249196888452477	0.646143532974884
Merged-chr6-37870654-4	chr6	37870152	37871152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272064)	promoter-TSS (NM_001272064)	-159.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	6.46456785622398	6.16809244740952	6.04969709719611	6.39770350918675	5.99993357261573	6.36174109564685	0.0178063465303011	0.954233345729332	0.989495550016789
Merged-chr15-59723232-2	chr15	59722732	59723732	+	752.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71727.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.70523696156414	3.68674785932482	3.88510599694629	3.81786345860825	3.34820399664267	4.04425235694439	0.0116421663807982	0.984505030174627	0.996640572378202
Merged-chr5-29289418-2	chr5	29288918	29289918	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88972.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	4.06277065999542	4.31948831979787	4.06245652295919	3.80627270225308	3.90932223635924	3.82723601673564	-0.920020693081835	0.0699656118313439	0.346302934344326
Merged-chr7-25764779-2	chr7	25764279	25765279	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10020.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	4.30328315518315	4.47595572207701	4.98450528430183	4.55099133841955	4.36444081813562	4.9204639938059	0.031153066387282	0.948949198034567	0.988169196639905
Merged-chr2-127832724-4	chr2	127832221	127833221	+	764.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-862.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	4.32815871000429	4.20260849434764	4.43345689279743	4.59387458110184	4.1929449347391	3.97522103449805	-0.0933084121548298	0.851230593413065	0.965211450762173
Merged-chr1-156439809-2	chr1	156439309	156440309	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 8 of 15)	intron (NM_009230, intron 8 of 15)	-18894.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	4.98827149816341	4.79982929259982	5.41636713906134	5.17789508331758	5.06498477590553	5.47823034092385	0.334244421821348	0.409313587089722	0.782658446423422
Merged-chr1-127775610-2	chr1	127775110	127776110	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	1446.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	6.02991274214975	6.02671797952992	6.11856634325801	6.49445782927258	6.47915330332112	6.30454331183858	0.633255097953571	0.0218220343488519	0.17113740189437
Merged-chr15-87077986-4	chr15	87077472	87078472	+	840.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-466327.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	4.72793838461568	4.94366686719628	4.65013432997743	4.72184615970588	4.91900390629758	4.54372954757315	-0.0847026998138572	0.839771724777375	0.962784121274377
Merged-chr4-134244913-1	chr4	134244413	134245413	+	707.0	f1_c57bl6.idr	non-coding (NR_040435, exon 4 of 5)	non-coding (NR_040435, exon 4 of 5)	678.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	5.13647825739745	4.81736725796388	4.92417983247883	5.49942739141467	5.08759801332192	4.60788213006852	0.326594258942229	0.461769934918043	0.815107818354545
Merged-chr17-70971173-1	chr17	70970673	70971673	+	979.0	f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	19343.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.17228353834635	3.00387865748941	2.97913822283246	3.2333306874104	3.2345257117916	3.29056753244272	0.833126431789561	0.199982877675172	0.588740988027021
Merged-chr2-59336154-2	chr2	59335654	59336654	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 12 of 20)	RMER6A|LTR|ERVK	50528.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.02878638440337	4.0620061985383	4.30190341774017	3.94102966079851	3.83999844376091	4.36786562782772	-0.206951176846906	0.689781411539537	0.917488557497671
Merged-chr16-92402339-2	chr16	92401839	92402839	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2261.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.22116472814447	4.20233218679966	4.72894856806819	3.95004581726163	4.05988029146251	4.58313954800551	-0.475026777204299	0.369864310910193	0.754352114878
Merged-chr5-115332713-2	chr5	115332213	115333213	+	578.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029645)	TTS (NM_029645)	5536.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	3.65921016312537	3.53814743160179	4.09695422236647	3.9898039611028	3.66776333238904	4.16396530232061	0.533025214948964	0.357779652623401	0.744327666153814
Merged-chr8-75093249-1	chr8	75092749	75093749	+	701.0	f1_balb.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-369.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.1519211451006	7.3676538743191	6.8547506781978	7.1103821895374	7.35568581710844	7.07175319046129	0.0596765992557899	0.824050375556042	0.958461473318254
Merged-chr18-83817614-4	chr18	83817097	83818097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268965.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.34764192376601	3.96751699286129	3.97114362182333	4.25221072273139	3.91757735485303	3.99038003271927	-0.15193671797733	0.768342730551028	0.942870275841222
Merged-chr19-11513701-4	chr19	11513205	11514205	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4854.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	5.02650038390001	5.4136766801759	5.35318496998458	5.08681493634091	5.08485122904563	5.19989947168022	-0.31297099001489	0.394644218560977	0.772514857254462
Merged-chr6-87914648-3	chr6	87914132	87915132	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173737, exon 2 of 7)	exon (NM_173737, exon 2 of 7)	656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	7.54800810255693	7.75323343990642	7.14315869854873	7.15800268157847	7.15428065578809	7.01080159050145	-0.597817471256379	0.0248544339894749	0.186381375576444
Merged-chr3-88494903-2	chr3	88494403	88495403	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	-1591.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	3.46916633728586	3.53539901105151	3.76186228237235	3.58626939742635	3.31362432196391	3.47050482069664	-0.474714861087208	0.420267231135071	0.789521469804967
Merged-chr1-37029375-4	chr1	37028917	37029917	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-89890.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.70475822441989	4.52188979391214	4.37658351869166	5.03216542060076	5.10060410190897	4.71116113203163	0.978863967768186	0.0212470515088682	0.168053675090295
Merged-chr10-8847430-2	chr10	8846930	8847930	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	38640.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.62274772123024	4.56720192467306	4.77135763057973	4.68961882317737	4.72119273570969	4.79937730721109	0.20118582451045	0.61730426138151	0.888810836054056
Merged-chr5-99231650-2	chr5	99231150	99232150	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 8 of 13)	intron (NM_181318, intron 8 of 13)	21277.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.01982829236063	3.89459005063482	4.54099886867917	3.90619264252815	4.09759391782391	4.49575769124052	0.0252485032130916	0.963324061049115	0.991095051079597
Merged-chr11-97148887-2	chr11	97148387	97149387	+	944.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198100, intron 2 of 8)	intron (NM_198100, intron 2 of 8)	825.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	3.84044875858258	3.69254963337502	4.29784894861876	3.96454777498943	3.7079835750353	3.97690433828396	-0.229393602671376	0.680110969212897	0.914139397449033
Merged-chr14-25403506-2	chr14	25403006	25404006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55679.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.37798245120205	3.05348266018159	3.77069639175938	3.12623517534377	2.90186464732504	3.18237495649056	-1.47105617156281	0.0389786955186266	0.244867344081872
Merged-chr7-127119286-4	chr7	127118777	127119777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2752.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	6.90103213989323	7.21269871201615	7.18955294266493	7.51378067867872	7.49301693397572	6.99748682450596	0.384924281139751	0.15649102295077	0.527122318915315
Merged-chr4-129678065-3	chr4	129677548	129678548	+	780.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356378, intron 9 of 9)	intron (NM_001356378, intron 9 of 9)	-5281.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	4.73124147907824	4.41659721735722	4.7749779588567	3.57052796206888	3.36158080087385	3.69159122071899	-3.82163785911126	1.75302683561548e-09	1.84640325237839e-07
Merged-chr17-84958562-4	chr17	84958038	84959038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027930)	promoter-TSS (NR_027930)	537.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	7.88456146203253	7.8143509882479	7.52110175621003	7.66485277634192	7.43443485007626	7.54760726817744	-0.299618037442602	0.207505146426813	0.59831527723439
Merged-chr2-11690504-2	chr2	11690004	11691004	+	962.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008367, exon 8 of 8)	3' UTR (NM_008367, exon 8 of 8)	-14789.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	1.7831600455108	2.00458840908298	2.00906529561552	2.18568877933646	1.93517513817173	2.21946520267421	1.43392297713355	0.158287101168341	1
Merged-chr10-120209596-6	chr10	120209131	120210131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 1 of 6)	L1MB2|LINE|L1	805.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	7.65246266315885	7.8065635398182	6.97848941589143	7.77453516363488	8.34307666454799	7.41169034905691	0.538777277154501	0.115458434756732	0.45366277255564
Merged-chr11-59506664-1	chr11	59506164	59507164	+	1000.0	f0_balb.idr	promoter-TSS (NM_001130529)	promoter-TSS (NM_001130529)	-24.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	6.46702626863562	6.22150318608423	6.21640352113279	6.07467892306932	5.79345652065625	5.75440814674601	-0.728584199001713	0.0161490688788753	0.139739155914461
Merged-chr7-111383876-4	chr7	111383380	111384380	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-261205.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	4.08333354350967	4.30581822293586	4.2876424346938	4.82238904841317	5.06309941109251	4.70742530187347	1.61688605306166	0.000239450123637637	0.00579236336210879
Merged-chr5-115342383-2	chr5	115341883	115342883	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026933, intron 1 of 1)	intron (NM_026933, intron 1 of 1)	1136.0	NM_026933	69076.0	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	5.11015243706767	5.24478303291019	4.81890235451331	4.73095854477942	4.94801911558994	4.92401255382792	-0.450523717843322	0.252817264366145	0.650195306094399
Merged-chr17-24455389-4	chr17	24454936	24455936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-44.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	7.88162208240708	8.30056180564575	7.7581436612142	7.75084125795704	7.94622396974455	7.69693344927667	-0.288112099939141	0.256734357359298	0.653802791429039
Merged-chr15-98685502-2	chr15	98685002	98686002	+	831.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-8041.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	3.6534592745441	3.6462016711574	3.74738571422196	4.06839928496072	3.80729994376409	4.10683247450252	1.00315874870055	0.0579249392162882	0.31103481959634
Merged-chr14-30613554-4	chr14	30613049	30614049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-3239.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.78404242932307	5.83714897556001	5.99723129018034	6.17470273076739	5.99369325707228	5.76257346812255	0.220984039365175	0.476138017541398	0.822350500651259
Merged-chr9-118653079-6	chr9	118652510	118653510	+	771.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	46301.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.99826050586816	4.68197555988924	5.30887650661528	4.7594815531578	4.88699461214695	4.85679323356097	-0.379409153935548	0.361818372781001	0.747478680384173
Merged-chr11-106271966-2	chr11	106271466	106272466	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130187, intron 1 of 12)	intron (NM_001130187, intron 1 of 12)	1006.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	5.32852422570593	5.46710408227188	6.12553711893744	5.66167314407983	5.49960797136756	6.20359503071488	0.24604668789577	0.547833567727304	0.859445606128575
Merged-chr7-56050934-2	chr7	56050434	56051434	+	827.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010418, exon 2 of 93)	exon (NM_010418, exon 2 of 93)	545.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	5.94653624314164	6.3907893265891	6.34199336167753	6.38957565175378	6.21774882865962	6.71596351059331	0.343020044686725	0.275626365857742	0.673202119620203
Merged-chr18-65071471-2	chr18	65070971	65071971	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47944.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.6737591548105	2.56642061964038	2.78790404397253	2.81781285275036	2.3632494740431	2.54589044252959	-0.482849454572116	0.557209955364018	1
Merged-chr16-18235615-3	chr16	18235101	18236101	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172151)	promoter-TSS (NM_172151)	-465.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	4.42423680560241	4.83917144175562	5.18436465612	4.42389846032699	4.27583642912915	4.73273047453754	-0.856480067209445	0.0732425820295507	0.355612151127686
Merged-chr12-24651232-4	chr12	24650733	24651733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-138.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	8.06617600158087	8.55527157973385	8.21386412252403	8.08478335894506	7.86454377314774	7.92084606638819	-0.478184623462007	0.0473606526663122	0.275675773841099
Merged-chr14-76473609-1	chr14	76473109	76474109	+	569.0	f0_balb.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-14827.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.11838242694372	3.2504393257413	3.25714017649329	3.9546945844869	3.84857607118245	3.62752283345256	2.36463649202877	0.000155844200863278	0.00409974210099008
Merged-chr7-48750581-4	chr7	48750073	48751073	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38430.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	3.58514784518225	3.47073812127757	3.52216379975353	3.71724628653151	3.71086914473751	3.64803467567849	0.585690834629662	0.288426839883592	0.685876372615419
Merged-chr16-56037790-4	chr16	56037290	56038290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029092)	promoter-TSS (NM_029092)	-16.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	8.21947980635452	8.60986810380848	8.09296566678731	8.32613728778873	8.47432231300154	8.12721448781792	-0.0158590436578845	0.948957386772589	0.988169196639905
Merged-chr16-44725078-4	chr16	44724560	44725560	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	759.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	7.24180020490974	7.44325454822376	7.24349504953683	7.56816329142642	7.4531380415835	7.27717721839554	0.186189814226666	0.435817317140259	0.799370838506028
Merged-chr1-128044419-4	chr1	128043966	128044966	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 3 of 20)	intron (NM_001285945, intron 3 of 20)	58005.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	3.20952981544048	3.29776108800394	3.35878805442251	3.36598883772473	3.29633725188908	3.42953486492048	0.295149068853118	0.624366855361783	0.89196183880064
Merged-chr13-30628844-4	chr13	30628354	30629354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	13811.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	5.56428618397523	5.35993423304329	5.61204289524868	5.77341889445253	5.82375143439361	5.67442650714835	0.470614543133749	0.14176545541627	0.502595716427364
Merged-chr15-64189453-4	chr15	64188955	64189955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	123218.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.21631220466561	5.19228511127628	5.58377174674218	5.3850591519732	5.10867587159154	5.45762479282374	-0.0303641009615071	0.934238642698251	0.985707838096286
Merged-chr1-135733174-2	chr1	135732674	135733674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	4007.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	2.50287235106759	2.74426055766147	2.76103793705939	2.90915740011752	2.54152544506897	2.95377194959302	0.713492681834175	0.365074025943609	0.75025511992679
Merged-chr3-108571654-4	chr3	108571223	108572223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025444)	promoter-TSS (NM_025444)	24.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	7.36751035446524	7.56320677371202	7.16729956945785	7.53711667021464	7.75617020486803	7.21221595089508	0.217028301485751	0.417480452295794	0.788024896207714
Merged-chr16-85285607-3	chr16	85285102	85286102	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111895.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.72342119652339	3.63050179192376	3.45494060390658	4.28885262203158	4.22886460594463	4.39451440514852	2.12519582791401	0.000126635029158766	0.00346271689327724
Merged-chr3-148792752-2	chr3	148792252	148793252	+	876.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	161883.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.50460407790542	2.43186040333538	2.58476574076421	2.36259821717657	2.32745283699791	2.53459141440717	-0.622574215085476	0.442727745322871	1
Merged-chr9-85327820-4	chr9	85327321	85328321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-671.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	8.58921552517042	8.8779508272595	8.34073497525845	8.65152040970241	9.00360595734433	8.53060337803296	0.169299397336243	0.50411623407886	0.837472869312072
Merged-chr18-5819106-4	chr18	5818620	5819620	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226473.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.55432980865515	4.3856228510112	4.82424301819228	4.61189819938203	4.56366880726339	4.70698235726875	0.0863580319871757	0.840672060653851	0.962819298477451
Merged-chr14-103946594-2	chr14	103946094	103947094	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80548.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	3.24838422603973	3.08485337449408	3.18407197766583	3.27309501890577	2.97106454589932	2.88412659544847	-0.51508990728069	0.454393243269373	0.810258970761208
Merged-chr1-184616127-4	chr1	184615631	184616631	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58440.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.51525626639014	7.50455557642082	7.14723957047558	7.00367825003677	7.35927242146226	6.67596522920054	-0.517875740845758	0.0761537600836104	0.363264221999761
Merged-chr11-119491432-4	chr11	119490943	119491943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153849)	promoter-TSS (NR_153849)	96.0	NM_001164636	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	8.00388428138468	8.13252592739386	7.80332004641088	8.03131841660536	7.98480571753054	7.74506033908016	-0.0872605384714011	0.705312451884823	0.922756484933722
Merged-chr15-63500575-4	chr15	63500070	63501070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20962.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.41990371080629	6.3358234838714	6.52502584116807	6.11115477839345	6.2875539664493	6.42773083840151	-0.242077089216611	0.385962915979517	0.766802022654688
Merged-chr15-73628053-2	chr15	73627553	73628553	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3309.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.20887771465938	3.12335273731727	3.24758385447282	3.33404102650266	3.14840807410535	3.95443430839498	1.23724992173924	0.0697328591030846	0.34566494342008
Merged-chr9-7873025-4	chr9	7872518	7873518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007464, exon 1 of 9)	5' UTR (NM_007464, exon 1 of 9)	152.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	8.55845146404353	8.84536044495373	8.2160979609672	8.47815395913399	8.92158710594038	8.16641570042902	-0.003997041233187	0.988930795544532	0.997469976378469
Merged-chr19-61228474-4	chr19	61227980	61228980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-62.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	8.21060319113785	7.87058462324361	7.76452645143667	8.30825247222776	8.25796161088926	8.02511503963736	0.335482379264372	0.166006323530499	0.541109862183596
Merged-chr4-103107819-3	chr4	103107366	103108366	+	867.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146254, intron 1 of 16)	B3|SINE|B2	6433.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	4.49413891626268	4.79362147760099	4.7992042233726	5.49790850246056	5.30216410552922	5.12533335303963	1.33538068529371	0.000654256143636678	0.0129926838185491
Merged-chr19-55767792-4	chr19	55767287	55768287	+	779.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	(TC)n|Simple_repeat|Simple_repeat	25977.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.70556210141175	5.55274816877422	5.7053931225774	5.69944432204731	5.61667053142217	5.39285500205628	-0.128898440994207	0.692413938073267	0.918658098290308
Merged-chr7-116093238-4	chr7	116092740	116093740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019772)	promoter-TSS (NM_019772)	-91.0	NR_029433	69350.0	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	7.01936360624176	6.80320705702563	6.86289368968932	7.0780799522458	6.80507616451775	6.57943460250707	-0.0862910285414237	0.751139999879857	0.937718261890661
Merged-chr3-116860552-4	chr3	116860052	116861052	+	875.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113478, intron 1 of 16)	intron (NM_001113478, intron 1 of 16)	985.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	5.26480242152056	5.02672093667323	5.28314525011681	6.03020166027939	6.05950686790091	5.53893632261858	1.35277555967678	0.000118362635858609	0.00327199940349606
Merged-chr8-22593889-4	chr8	22593403	22594403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-90.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	7.08486707397134	7.4399000618427	7.24016462138643	7.37840150060479	7.250290161247	7.17689843645122	0.0111927341424938	0.963874548947905	0.991213692099629
Merged-chr8-119811903-5	chr8	119811325	119812325	+	913.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	28754.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.96301747802163	5.0296349832122	5.17977403604693	5.24992632242214	5.12973687251134	5.04089078309461	0.195406510930575	0.592024880347211	0.877880937493524
Merged-chr1-88213637-2	chr1	88213137	88214137	+	968.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_201645, intron 1 of 4)	intron (NM_201645, intron 1 of 4)	1678.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.69008475633483	4.14106094211488	3.97581580986286	3.72431861954875	3.85284526835402	4.2640628865944	0.0290900901316252	0.958396963963403	0.990034569981835
Merged-chr2-23048796-2	chr2	23048296	23049296	+	733.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-8555.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	2.95747673571268	3.04127924263039	2.93790989558443	2.86330868851671	2.87792988250988	3.0101455925542	-0.320750754303145	0.638523313869744	0.897576536084903
Merged-chr3-88686266-1	chr3	88685766	88686766	+	573.0	f0_c57.idr	intron (NR_151827, intron 1 of 13)	CpG	479.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	8.28385477217392	8.42693303737157	8.25572675607089	7.97617783179416	8.45536886220908	8.39500978807514	-0.044014838421218	0.85194550096894	0.96531854415899
Merged-chr18-75171443-4	chr18	75170942	75171942	+	939.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	125875.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.2782772646916	4.15570436628321	4.16762197207015	3.90415544143241	4.00068100904276	3.99784769936888	-0.68545613287236	0.155487225681941	0.525178854253822
Merged-chr9-13664731-3	chr9	13664229	13665229	+	854.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	2269.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.19761485235452	2.94790561448451	3.01218086196734	3.06539803143694	2.86479087008947	3.14359721955715	-0.156513341255989	0.819139729045394	0.957209935971094
Merged-chr10-13300395-4	chr10	13299891	13300891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23898.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	7.91933764440914	8.13215957772984	7.76776752719716	8.18359471418966	8.45953897362943	8.035746626976	0.410503777312844	0.0898160693563311	0.398318277586379
Merged-chr1-36597084-2	chr1	36596584	36597584	+	660.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 10 of 14)	MTD|LTR|ERVL-MaLR	-3752.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.95702084687319	4.7578472272431	4.81591815632974	5.09455262408871	5.09188770511445	5.03011111717397	0.492138113320603	0.190135398832327	0.576299386028668
Merged-chr18-60802629-2	chr18	60802146	60803146	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-1203.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	5.19223739894072	5.00239363625712	4.76387620567591	5.68996729118554	6.21455392101849	5.6181811751857	1.67125390163097	1.98901805361952e-05	0.000726994906337731
Merged-chr15-103514825-2	chr15	103514325	103515325	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-152.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	4.62419495030794	4.53126938222194	4.42268187251669	4.55046243503786	4.75410132304927	4.69917345223241	0.335403700856805	0.423063936560758	0.791814651217475
Merged-chr4-8913326-4	chr4	8912807	8913807	+	965.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161983.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.32902974603405	7.48060689269772	7.41792856532741	7.84359227107874	8.00474844064374	8.0126174564246	0.787587078448576	0.000372969548358265	0.00832905265158199
Merged-chr11-102298643-1	chr11	102298143	102299143	+	594.0	f1_balb.idr	Intergenic	B1_Mus1|SINE|Alu	-2014.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	3.37489149163746	3.23200106918866	3.51539997613644	3.2905947685804	3.34042872820942	3.58480761574075	0.123219954847818	0.839831344537194	0.962784121274377
Merged-chr4-6222868-1	chr4	6222368	6223368	+	656.0	f1_c57bl6.idr	Intergenic	Intergenic	31763.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	4.06464115432055	3.75717005353895	4.22039793658755	5.7377711833671	6.05991278477601	5.78123683322616	4.7306904172626	2.64565638178863e-19	1.59441438442883e-16
Merged-chr16-4757049-6	chr16	4756527	4757527	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357050)	promoter-TSS (NM_001357050)	81.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	7.74096365278478	7.7329289599294	7.38735255942411	7.86044372442646	8.08919883723085	7.52120425142533	0.31115236596559	0.236099780910549	0.632437001255673
Merged-chr11-97838913-4	chr11	97838455	97839455	+	765.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010688)	TTS (NM_010688)	-1825.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	4.75602844623123	4.2740863576802	4.76017754115792	5.32405539918556	4.92675513101208	4.38191733173372	0.727652796524894	0.14322459374	0.505212050378204
Merged-chr14-50784556-4	chr14	50784057	50785057	+	828.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360545, intron 1 of 8)	intron (NM_001360545, intron 1 of 8)	963.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	4.6099745558545	4.91342287040312	4.60285920025504	4.88747546596986	4.7722296558938	4.670437566678	0.132714109442498	0.74750949007584	0.936632541920315
Merged-chr19-41374777-4	chr19	41374277	41375277	+	980.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	10293.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.8779280553474	5.33829421132725	5.14277680506163	5.06245717755125	5.07427732006132	5.3902559178718	0.0814242587323625	0.833566633070437	0.96108264611081
Merged-chr5-105564101-2	chr5	105563601	105564601	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	Lx8|LINE|L1	44630.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.83075722658222	2.84995585767874	3.18554315241472	2.83122252893907	2.84742770577715	2.91903499721174	-0.451353086099264	0.52554355716864	0.849027787811941
Merged-chr2-71055692-4	chr2	71055194	71056194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	-50.0	NM_001165982	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	7.57355832373753	7.84889104525289	7.63089584579562	7.62538011029793	7.77224900809065	7.51126244879339	-0.0668014819579306	0.775227971563221	0.944594834759211
Merged-chr1-173419742-3	chr1	173419231	173420231	+	860.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-873.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.2386733037984	7.28188037145964	7.31756511979335	7.68464308584628	8.02368804092961	7.56540462856103	0.735171384454216	0.00267258584397138	0.0385608675056651
Merged-chr16-4920789-4	chr16	4920308	4921308	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 9 of 17)	intron (NM_001357062, intron 9 of 17)	-18303.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	5.26050697680084	5.40475657778025	5.44683777489066	4.86196182637933	5.2718267381271	5.33506200478141	-0.397603498464752	0.283972049036251	0.681611557612887
Merged-chr2-59338004-2	chr2	59337504	59338504	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48678.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.65793729846188	6.38801252838484	6.46375096124645	6.48509430387128	6.40446541117054	6.55827158385886	-0.0506932266793906	0.851277666226469	0.965211450762173
Merged-chr9-104061461-1	chr9	104060961	104061961	+	719.0	f0_balb.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1660.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	3.39697623532539	3.56710494651655	3.40185385705542	3.36803948225896	3.19352781778515	3.36057015560303	-0.609256395627327	0.313609799358173	0.708121563861612
Merged-chr8-27128705-4	chr8	27128211	27129211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025686)	promoter-TSS (NM_025686)	-79.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	4.79375695982015	5.07564087867261	5.11021666972153	5.24105139638584	4.82801830018733	4.81450571248909	-0.0382615226596886	0.924633446343388	0.983027504754402
Merged-chr13-51847420-3	chr13	51846920	51847920	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011817, exon 2 of 4)	exon (NM_011817, exon 2 of 4)	745.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	7.55113637740414	7.57486033900971	7.47975432628235	7.5875007055947	7.63893955369171	7.84181862025987	0.21959375995809	0.329758018822115	0.721504110160967
Merged-chr1-155054874-4	chr1	155054431	155055431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	28333.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.62175393535001	5.50314324214306	5.34878130754777	5.70548780873496	5.52547458174206	5.44406219736488	0.117921841942847	0.724044698276977	0.929178878081464
Merged-chr4-32160458-3	chr4	32159985	32160985	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196378.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	5.44388520551604	5.45950875318933	5.98123741373223	5.89075452843346	5.48996260865739	5.71584696414582	0.120958015999578	0.736378507850761	0.933137122599426
Merged-chr2-160210032-4	chr2	160209555	160210555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117439.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	7.12815445614954	7.26684351753092	7.11848322451101	6.92394679392107	6.94469570918647	6.73261090938147	-0.453219669784765	0.0645554634444439	0.331146723524153
Merged-chr19-23863320-2	chr19	23862820	23863820	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	104444.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	2.76627445134843	2.92976543768659	2.93036163194754	3.08802424680495	3.19449788801311	3.18066430287415	1.31066583690778	0.0558989022286855	0.304407901936361
Merged-chr18-34119193-4	chr18	34118693	34119693	+	919.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101791.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	5.68569035660319	5.6027855054078	5.77804872367846	6.14966776032631	6.49339178639354	5.81423837002623	0.894178555955192	0.00709261188997356	0.0789308169218776
Merged-chr11-116093867-4	chr11	116093364	116094364	+	973.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6869.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	5.89520636277377	5.87585762751412	5.98858141824224	5.78254907269023	5.78181395055144	6.11332604065616	-0.0466501556914988	0.879394780998161	0.972083703102674
Merged-chr7-101907772-2	chr7	101907272	101908272	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-1413.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	6.55732136936838	6.832201907895	6.78295306160712	6.99360808752674	7.17499785490791	6.94393653453976	0.492288709860688	0.0556332210194663	0.303509641659307
Merged-chr6-97388271-2	chr6	97387771	97388771	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D10|SINE|Alu	71015.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.51683823964748	3.35147932184973	3.47168421207328	3.3005769232924	3.28051881352863	3.48864465667291	-0.361995970472973	0.544318518312505	0.85765692399006
Merged-chr17-56462414-6	chr17	56461925	56462925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252456)	promoter-TSS (NM_001252456)	-204.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	5.00114462145349	4.92676422640866	5.15776858439645	4.95798227197101	4.86739622556148	4.79831296169082	-0.318266252788354	0.402212593963774	0.77787096574423
Merged-chr4-40868939-4	chr4	40868443	40869443	+	925.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-14406.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	3.43712295448928	3.53339984296191	3.49284295066921	3.27127505673003	3.153317031796	3.28574506186949	-1.02170609706384	0.092590121487125	0.405315594944271
Merged-chr2-31068978-4	chr2	31068486	31069486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	27514.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.97563257100243	7.0969600930488	6.98521576130818	6.95697450903461	6.82747642047734	6.94719456833838	-0.17560489688165	0.468701506617925	0.818694631884688
Merged-chr14-122534244-4	chr14	122533740	122534740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144844)	promoter-TSS (NM_144844)	-88.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	5.62464384377179	5.56163688006458	5.39251391098688	5.81940505166678	5.72894893466302	5.51784376172957	0.306233997892129	0.349673256486632	0.737704147134326
Merged-chr1-152609674-3	chr1	152609151	152610151	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	15566.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.86315873328578	5.74890510426873	5.60765559880533	5.6724352246135	5.79952293234472	5.72506118369368	-0.0275406855000341	0.929781428726304	0.984253185265936
Merged-chr1-74712214-4	chr1	74711728	74712728	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1307.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	5.71839028213586	5.7384088621532	5.98504443963619	5.72399996038768	5.85513340192251	6.08800276974071	0.142176435189344	0.652972732667036	0.903046151766902
Merged-chr11-69627977-2	chr11	69627477	69628477	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4994.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	3.47955537375	2.98573295962981	3.08605011143871	3.00434789396446	3.06124484097023	3.15925304660658	-0.564977690312906	0.412631602165215	0.784551818322662
Merged-chr11-59810382-2	chr11	59809882	59810882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	302.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	8.57557002072926	8.63210592845683	8.45509454431156	8.54244332047522	8.7086002967571	8.2138999676678	-0.0645260919743029	0.778965248137647	0.945586035174005
Merged-chr13-23534293-3	chr13	23533805	23534805	+	715.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175661)	TTS (NM_175661)	394.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	4.71351758144803	4.86100971910258	4.58865793942745	4.99842281217181	5.42631719320194	5.05497374994649	0.974970219928135	0.01588511468526	0.13834279749462
Merged-chr3-103020463-4	chr3	103019956	103020956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144901)	promoter-TSS (NM_144901)	-90.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	9.11325386383606	9.40240897347819	8.99075477764408	8.9987950350814	9.35362883481782	8.98527685722376	-0.0758289685599073	0.744225972695667	0.935908101256887
Merged-chr11-60931961-4	chr11	60931445	60932445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027800)	promoter-TSS (NR_027800)	-78.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	7.31000531006599	7.59444510064613	7.44634573353088	7.345413709109	7.43052153308047	7.40921900118289	-0.0897258489322774	0.70017229735044	0.920903457324348
Merged-chr3-96730029-3	chr3	96729532	96730532	+	835.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	2421.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.53723640565101	4.5618692951184	4.27961338281433	4.81062990817528	4.93113518941308	5.00320659114255	1.02478706530911	0.0147510111293329	0.131146410940706
Merged-chr11-101645585-4	chr11	101645064	101646064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17615.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	6.77934688965029	6.68881523601715	6.71227606565572	6.98700696846026	6.89472983884015	6.84784449098291	0.287434172753429	0.243843221870141	0.640958811221234
Merged-chr1-152576682-2	chr1	152576182	152577182	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	48535.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.40460701041522	4.2128147071748	4.43668360376881	4.6035378055478	4.07222661285826	4.7702879984772	0.389826767305052	0.42864913807704	0.795420465213011
Merged-chr9-118737348-3	chr9	118736857	118737857	+	882.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	25665.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.91262638958586	3.76673055965635	4.29127334181703	3.62390787364683	3.51446875256337	3.67707322515808	-1.30038660003508	0.021360420625202	0.168675274889724
Merged-chr18-58660046-4	chr18	58659572	58660572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	590.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	6.69237785887083	6.6968737020861	6.92156136242811	6.42162909940667	6.63912699251685	6.59150000496945	-0.336699694550296	0.202893853784139	0.592772302593993
Merged-chr6-134035755-4	chr6	134035320	134036320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007961, exon 1 of 8)	5' UTR (NM_007961, exon 1 of 8)	120.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.82845540773901	8.92292623600067	8.59418068636947	8.65917518172487	8.87349557020406	8.59741685836585	-0.101500404175385	0.641809294266968	0.899182569727776
Merged-chr11-121083108-4	chr11	121082602	121083602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1963.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	6.20198131400278	6.35040241320812	6.42565180172772	6.02084519696524	6.41286769087828	6.4849014149453	-0.0077827056728293	0.979032071747942	0.995160277495735
Merged-chr2-120561734-2	chr2	120561234	120562234	+	619.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	2125.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	3.9804662363435	4.36291987999339	4.30786937313139	5.4735160938579	5.45873172360686	4.95184228873686	2.56512053767476	1.99770633777366e-08	1.69444596282845e-06
Merged-chr10-127522400-4	chr10	127521865	127522865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252316)	promoter-TSS (NM_001252316)	79.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	3.50468960382241	3.43967786864246	3.56645058136267	3.67588127394619	3.06964581998803	3.47582157024247	-0.266877154807955	0.679718118831449	0.914024131867986
Merged-chr9-40757394-6	chr9	40756902	40757902	+	923.0972289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43871.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.30360758001173	5.33711583523117	5.41303163832888	5.46654746672411	5.42961141835296	5.53297406805574	0.243699774460841	0.461342355800473	0.814992635038861
Merged-chr12-12247996-1	chr12	12247496	12248496	+	630.0	f1_balb.idr	Intergenic	Intergenic	-14143.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.90904036867421	4.93121625659307	4.88081489508294	5.35870413884633	5.69020024726452	5.41658580925327	1.24826636317862	0.000584332008675943	0.0118907062308408
Merged-chr11-53890975-2	chr11	53890475	53891475	+	838.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011396, intron 1 of 9)	intron (NM_011396, intron 1 of 9)	728.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	5.86477204198043	5.98068801333701	6.19267536141475	5.88037190515279	5.92296118884517	5.6073875956092	-0.333777447241731	0.289987404693495	0.687700879517227
Merged-chr5-86792920-3	chr5	86792416	86793416	+	952.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-11350.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	2.70817812254744	2.47268279871971	2.86816145562728	2.6184780638929	2.43180683545559	2.44392923053101	-1.08506154237708	0.185976027726295	1
Merged-chr15-78328219-1	chr15	78327719	78328719	+	628.0	f0_balb.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	2229.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	5.00718524183162	5.00626284764428	5.00408206943919	5.10862804747151	5.17537119110656	4.84294767880576	0.119675633922357	0.749866067217814	0.937463855381525
Merged-chr19-6487330-4	chr19	6486804	6487804	+	772.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	55766.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.51494571170361	3.24793331936396	3.33496893286692	3.27585333652634	3.36869498734569	3.46098459536557	-0.0170553266777165	0.977633846732918	0.994887548257726
Merged-chr11-78032230-4	chr11	78031733	78032733	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183286)	promoter-TSS (NM_183286)	-80.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	3.08675021925033	2.80547696802574	2.9515397357654	2.90712321261984	2.63485156599375	2.96487591848646	-0.56397795622045	0.443940482808218	0.803884349333946
Merged-chr17-86744880-3	chr17	86744368	86745368	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8996.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.85757869054846	2.98892295882983	3.02638107866517	2.676128177162	2.44530819321622	2.6753593654646	-2.07944776753898	0.0102249587812353	0.10196528886254
Merged-chr16-37539792-4	chr16	37539291	37540291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028812)	promoter-TSS (NM_028812)	-2.0	NM_001355727	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	8.04907819088588	8.05421795254269	7.68871861198899	8.13043442047981	8.41579405713313	7.54260033571271	0.202903121980292	0.487349013234739	0.828421837588934
Merged-chr16-38760920-4	chr16	38760377	38761377	+	934.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	18618.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.91384909164055	6.10983724676692	5.91834118989933	6.69932987247716	6.62634782536278	6.41678784293826	0.99698729883215	0.000443705194202788	0.00956472067337451
Merged-chr5-115513447-3	chr5	115512955	115513955	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	ID_B1|SINE|B4	6779.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	8.16493399636372	7.86888668431631	7.69163620618879	7.02192508458964	7.1891639530776	6.88391839229922	-1.29203932541237	5.42239000091206e-07	3.1551484419293e-05
Merged-chr16-87479210-3	chr16	87478707	87479707	+	968.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024258, exon 14 of 18)	exon (NM_024258, exon 14 of 18)	16662.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	3.82667604128322	3.75459622736703	4.06502092522848	3.82783371407777	3.5544156928821	3.85368888248175	-0.440753684804021	0.417861810768779	0.788387047082865
Merged-chr12-8495363-2	chr12	8494863	8495863	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4646.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.97917768953446	2.89926217122948	2.95668317265933	2.67556321627528	2.91294558055727	2.96988285249463	-0.4213534649838	0.555175700612815	0.863184776736198
Merged-chr14-21706769-2	chr14	21706269	21707269	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7807.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	4.24012759640241	3.97182492136721	3.78987253605015	3.72406931226839	3.45911519546569	3.75408878781503	-1.21953849153009	0.0295637403528449	0.206856685778634
Merged-chr4-145252774-4	chr4	145252277	145253277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5907.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.03114979446824	4.04034377581733	4.1022143580005	3.99145329528208	4.13487849439487	4.02758478467871	0.00405534456783951	0.993292111607862	0.998651348330892
Merged-chr12-100183153-2	chr12	100182653	100183653	+	922.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4815.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	4.50780747466036	4.550443207681	4.57550341988943	4.80187919713887	4.56271569606273	4.79760763667838	0.418860351648605	0.311502713682664	0.706523409477924
Merged-chr10-60289410-4	chr10	60288941	60289941	+	860.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	4980.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.43043628728551	5.68248505615823	5.69549073856237	5.86100693248102	5.74332824456883	5.75742104097312	0.336212334828562	0.290071473572429	0.687733205116261
Merged-chr6-29510493-2	chr6	29509993	29510993	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2541.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	3.67978727049968	3.53119678090434	3.62582839959855	3.67254783885369	3.7110174982564	4.2872047786249	0.963749033674842	0.0968511296527019	0.414866862092253
Merged-chr14-19975152-4	chr14	19974684	19975684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	1509.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.00747323837404	7.03276019545539	6.50668965659716	6.75862133158224	6.68357149782637	6.4099217184285	-0.388974097655502	0.18111285029466	0.563386969506079
Merged-chr2-170311166-4	chr2	170310674	170311674	+	951.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45187.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.13477783347774	4.03202277052344	3.82884337027467	4.11049918532273	3.73579010838952	3.84657226323307	-0.3173434326131	0.54763734239102	0.859389836719927
Merged-chr6-17584159-4	chr6	17583675	17584675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52835.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.53483649575435	3.21822847115243	3.18650368342765	3.53183738658551	3.80350439398142	3.71730208265902	1.31999004140398	0.0352994460759233	0.230657790881532
Merged-chr3-104996626-2	chr3	104996126	104997126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-34917.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.29572214524095	4.31897452563276	4.54440351157873	4.27872913526684	4.43467401564268	4.86070536526776	0.386426705053005	0.407746988208	0.781872914866713
Merged-chr2-118029298-2	chr2	118028798	118029798	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 7 of 9)	intron (NR_126479, intron 7 of 9)	81904.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	3.25899863104164	3.05386161546337	3.47322792247381	3.28423923972129	3.16094586597946	3.38635795843371	0.0388176893541232	0.951877981484162	0.988976180066341
Merged-chr3-106485202-4	chr3	106484718	106485718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028110)	promoter-TSS (NM_028110)	695.0	NR_033207	69206.0	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	7.04909141575027	6.88547484320752	7.13939033784264	6.95900335210901	7.03169050533588	6.61456277779853	-0.202157050581105	0.446460680069594	0.805889760011081
Merged-chr5-64231005-4	chr5	64230482	64231482	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	625.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	8.53815135599875	8.56595915828171	8.22675014380047	8.5670689209646	8.61133250737778	8.09949958813229	-0.00562913832126229	0.981800839141251	0.99582830941535
Merged-chr4-130817685-2	chr4	130817185	130818185	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 2 of 4)	intron (NM_011520, intron 2 of 4)	25148.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.64303003639947	4.81586815254404	5.39026931382059	5.24472248604376	5.01935628357931	4.9518188500758	0.216680338069052	0.614898488985747	0.887639829057119
Merged-chr5-134184008-4	chr5	134183505	134184505	+	928.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053266)	promoter-TSS (NM_053266)	-33.0	NM_001359852	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	8.0678576212051	8.58557017313178	7.99658596734743	8.07515909233687	8.17775864949152	7.77916458665564	-0.315675623299168	0.236346772989444	0.632720263621021
Merged-chr4-132247710-4	chr4	132247203	132248203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122992, intron 3 of 10)	intron (NM_001122992, intron 3 of 10)	13846.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	4.00565237769075	4.1265170138653	3.90442558473921	4.31450383491233	4.34172293955002	4.07999637523612	0.663489377481327	0.172642433254413	0.551230561617291
Merged-chr5-135189324-2	chr5	135188824	135189824	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	2001.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	3.69465799983737	3.75747645623911	3.86209096695188	4.01559145231696	4.0067561476616	3.77624593390134	0.553219545473172	0.287349924896565	0.684650023087306
Merged-chr10-62578490-4	chr10	62577967	62578967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-10.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	5.51443964893598	5.53333786298245	4.90188622223398	5.07668392102849	4.83678746719025	5.18945077177813	-0.667560203546205	0.0978200825291117	0.417064164942457
Merged-chr19-37965956-2	chr19	37965456	37966456	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	77621.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	3.66465982638586	3.51701060424442	3.71971164021048	3.76896278230766	3.54320098956338	4.15489263127378	0.667556672178281	0.248838986808657	0.645843447218383
Merged-chr8-61928136-4	chr8	61927643	61928643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293783)	promoter-TSS (NM_001293783)	56.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	8.38794308061538	8.87879985956226	8.02892493889267	8.43905556748343	8.94749389688847	8.23770148077209	0.133540207814142	0.665222230140376	0.907762144972922
Merged-chr10-128410712-2	chr10	128410212	128411212	+	955.599976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-161.0	NM_001358972	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	6.72248452937717	6.85884213989294	6.87341865914717	7.14110535903537	7.41865935645855	7.2311752629247	0.692639134708323	0.00501465213785454	0.0613436011594532
Merged-chr15-83122812-4	chr15	83122305	83123305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029101)	promoter-TSS (NM_029101)	-4.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	6.50378088676744	6.47423693054144	6.45138966022734	6.34000091448354	6.47218465032864	6.27872267463408	-0.169508531720511	0.526433863705384	0.849433518128594
Merged-chr5-21185776-2	chr5	21185276	21186276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-491.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	6.89250063321127	6.69046658893785	6.39331340977126	6.76256751511915	6.8058336295245	6.30771550087452	-0.0449154667069445	0.881609036427121	0.972846584805466
Merged-chr5-138117868-2	chr5	138117368	138118368	+	628.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011757, exon 2 of 5)	5' UTR (NM_011757, exon 2 of 5)	963.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	5.48482212337208	5.61056746769579	5.7627554147722	5.08510905461406	5.51734449195386	5.45410650627267	-0.473988730135148	0.180172988869792	0.561849644263301
Merged-chr5-135707981-4	chr5	135707485	135708485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	18840.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	7.9830818922267	7.90845639407063	7.66338271172878	7.56319362198567	7.6818470214998	7.42723901489525	-0.42775151243174	0.0674397785522175	0.33963882699088
Merged-chr8-85029376-2	chr8	85028876	85029876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	2543.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	4.09485559663997	4.12061938658514	4.192713590263	3.99874424814198	3.96502601883276	4.34344149145084	-0.0913133740997392	0.852123958985352	0.96531854415899
Merged-chr10-40108130-4	chr10	40107610	40108610	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	34144.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.7349347214714	3.61710531598245	3.62892452985834	3.8192369927909	3.71254346144013	3.99846440127299	0.585144767824195	0.277615128667886	0.674840772018624
Merged-chr8-36995459-4	chr8	36994994	36995994	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039220)	TTS (NM_001039220)	1919.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	5.28296844793231	5.13272193813474	5.26575799214597	5.15668445151966	5.17718789928911	5.16770544244058	-0.120097256159838	0.73205631520288	0.931655063903171
Merged-chr7-128065784-4	chr7	128065275	128066275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 2 of 29)	Lx8b|LINE|L1	3135.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.87727871500375	5.70327154088659	5.91224366617612	5.40104550998725	5.61921429945601	5.95046531438803	-0.297375681740937	0.375688851810797	0.758886605954294
Merged-chr12-100505631-4	chr12	100505123	100506123	+	943.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	15199.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.81658086655556	3.79004791665784	3.71727623731371	3.70552049567714	3.51583642107338	4.24346368321053	0.233774552400304	0.69023145578619	0.917764409355492
Merged-chr14-27341649-4	chr14	27341150	27342150	+	932.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	MIRb|SINE|MIR	5613.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.60969914912848	4.66040311450302	4.63817383348694	5.54674109033879	5.09114716833487	5.16187930392056	1.40312903882955	0.000421444792096506	0.00917279054689146
Merged-chr17-78836291-1	chr17	78835791	78836791	+	599.0	f0_balb.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	775.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	4.59027482635064	4.60887645978557	4.77877647382372	4.67001735959234	4.82731044211461	4.76891273462912	0.245342323911599	0.542241792740407	0.857067349203709
Merged-chr10-80406083-2	chr10	80405583	80406583	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025650, intron 1 of 2)	intron (NM_025650, intron 1 of 2)	738.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	4.55618451247905	4.81737693184755	4.87039694663492	4.63811804739877	5.08113267270483	4.82481184427194	0.270293721937955	0.519087742545919	0.845629761325035
Merged-chr15-84856203-4	chr15	84855718	84856718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081166)	promoter-TSS (NM_001081166)	-89.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	4.70671504093801	4.70605036137764	5.08276101111453	5.16074474084183	4.82832983081232	5.08127582876209	0.425284317646615	0.291774765357662	0.689235268138963
Merged-chr1-135732052-2	chr1	135731552	135732552	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	2885.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.30958289283109	3.35788863171523	3.46905733748557	4.03117222856016	3.73971648869628	3.81135109071382	1.75254033068293	0.00243060630551999	0.0359228933338733
Merged-chr16-78301546-1	chr16	78301046	78302046	+	704.0	f0_balb.idr	promoter-TSS (NM_001276263)	promoter-TSS (NM_001276263)	-125.0	NM_009988	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	2.12641439131228	2.09160228133734	2.26096443024398	1.93502621975291	1.9581535765829	2.14240826014489	-1.1645188122403	0.216899778093649	1
Merged-chr4-59806728-4	chr4	59806216	59807216	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	1066.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	7.36100201746657	7.68754519315437	7.4140570814334	7.23178208307705	7.53844411556648	6.91074219069768	-0.343365073745823	0.216418517133086	0.609914829912841
Merged-chr4-102566628-4	chr4	102566116	102567116	+	966.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-3444.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.78823606308507	4.95960142500214	5.37132198325594	5.12107909861267	5.22940439703749	5.56617478967652	0.536338924517261	0.18125770487326	0.563574247882485
Merged-chr5-115530107-4	chr5	115529526	115530526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23350.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.40432079978855	7.55879109066445	7.53983624363016	7.35802226854288	7.62117222655879	7.16221884295071	-0.141244659791935	0.570524398535538	0.869220609141201
Merged-chr6-113675405-2	chr6	113674905	113675905	+	621.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 5 of 11)	intron (NM_001113553, intron 5 of 11)	-21645.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	3.23807900838348	3.21009800960459	3.11583434114723	3.22173676915593	3.29860711891124	3.36053826538592	0.416154320860769	0.503674609324798	0.837146033423024
Merged-chr7-19935432-8	chr7	19934937	19935937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-14294.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	7.50497458951903	7.60793600806457	7.44089006780804	7.38997192659838	7.32790069614884	7.34686600040763	-0.248082720666952	0.269910547177772	0.666925517730306
Merged-chr17-81703127-1	chr17	81702627	81703627	+	1000.0	f0_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	35260.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.74835616378489	6.94635062156236	7.06677911598496	6.66057825874943	6.88544690113243	6.95652119581357	-0.128701102519894	0.623067250563579	0.891251075175817
Merged-chr16-30943506-4	chr16	30942994	30943994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	137938.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.06691659096128	4.62414607657661	4.86227078535294	4.86038563790697	5.21331686871885	4.81195528115381	0.265648152927298	0.524483487741793	0.848720771062215
Merged-chr7-129574691-4	chr7	129574195	129575195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17168.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	5.85934373642327	6.29411980521726	6.32649556160575	5.99071701341511	6.32432394669741	6.21076791686106	0.0230174538230883	0.941623778141782	0.987024728112131
Merged-chr19-55743632-4	chr19	55743113	55744113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	1803.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.6281072177226	6.77253082546976	6.88732560372452	6.69169897042717	6.91301277089725	7.19558257013474	0.280938927116826	0.304804878917078	0.701123221294327
Merged-chr12-103388685-4	chr12	103388178	103389178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026580)	promoter-TSS (NM_026580)	-3.0	NM_026580	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	4.80901772511306	4.70974709973423	4.66601355884497	4.95699032518941	4.7555579080834	4.37117979812987	-0.0124779472493624	0.977027602392759	0.994769134402338
Merged-chr4-132639572-3	chr4	132639057	132640057	+	644.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010166, intron 1 of 17)	intron (NM_010166, intron 1 of 17)	511.0	NM_010166	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.05128948562178	6.19636154905515	6.42541298293631	6.28641148551262	6.15906355109494	6.04303118555019	-0.0902209437672771	0.759270433262572	0.940321404600773
Merged-chr4-155085005-2	chr4	155084505	155085505	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026395, intron 1 of 6)	L2a|LINE|L2	1292.0	NM_026395	67830.0	Mm.241604	NM_026395	ENSMUSG00000029048	Rer1	1110060F11Rik|5830454N22Rik|AU043380	retention in endoplasmic reticulum sorting receptor 1	protein-coding	2.93889418999944	2.73457830733862	2.75458830968098	3.02526704637312	2.71714556320352	3.12886198677824	0.721030543183446	0.329807681881062	0.721504110160967
Merged-chr14-30722594-2	chr14	30722081	30723081	+	619.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166532, intron 1 of 20)	B2_Mm2|SINE|B2	6966.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	2.68561453005452	2.85109913157619	2.95958480224964	2.849059850571	2.65936151841342	2.59750109451157	-0.656944596130082	0.385491120527332	0.766541884498465
Merged-chr7-130821891-2	chr7	130821391	130822391	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 14 of 15)	intron (NM_001081038, intron 14 of 15)	-43833.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	2.502328429625	2.36508741719607	2.51478824051268	2.34394666161541	2.13090038931016	2.398274690036	-1.13994981549656	0.192484623634576	1
Merged-chr1-24700626-4	chr1	24700118	24701118	+	960.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	21700.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.21057427091663	4.94926401993997	4.6433446310621	4.67293361727935	4.89288912348302	4.48336386022091	-0.57770421172714	0.188354425735656	0.573856506777945
Merged-chr2-48350421-4	chr2	48349930	48350930	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-463679.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	2.8459547478265	2.95008485920717	3.0395450584075	2.74942936399647	2.93605368776952	3.05409784666062	-0.132893419709974	0.850018342370571	0.964784152666354
Merged-chr18-82785370-4	chr18	82784873	82785873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-26334.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	5.76230526421007	5.55884671619546	5.55187660785769	6.15405127011933	6.39044657404531	6.16676656551594	1.07612149422536	0.000425884944393077	0.00925007425034172
Merged-chr12-91665731-3	chr12	91665259	91666259	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-75272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	3.70328690897616	3.8443821772794	3.90770012806668	3.65820971225868	3.75256290856709	3.83048360793539	-0.231020590991082	0.662210839607704	0.90668833008286
Merged-chr2-129196451-4	chr2	129195935	129196935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2338.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	6.68193014129894	6.35383088685751	6.69524721079777	6.54981990133685	6.55442487232196	6.62653632140641	-0.00947290118975508	0.972189461369409	0.993868590220018
Merged-chr18-53159972-2	chr18	53159472	53160472	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16320.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.84620313928806	3.91779362055774	4.53072618327513	4.30680688744099	4.10215058908512	4.48297340610294	0.478065683809955	0.372369579004286	0.756171517505519
Merged-chr2-168563408-4	chr2	168562888	168563888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	26977.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.95435217064888	3.71191960113801	3.71379955410199	3.66623517623929	3.12351241399733	3.32847836538129	-1.47060646043617	0.0223529230906793	0.173696490897389
Merged-chr11-79523757-4	chr11	79523257	79524257	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	5.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	6.88111456344904	7.11818964266526	6.93852930496983	7.41924559731325	7.5713719850202	7.1335276254038	0.614358840947515	0.0167385187094567	0.143526243278697
Merged-chr9-78429065-2	chr9	78428565	78429565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14172.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	5.98488923420673	6.41070493411142	6.63564681124233	6.19567772912695	6.35765250468033	6.31685217527647	-0.11552220015798	0.710379015972474	0.924293540432205
Merged-chr15-98512110-2	chr15	98511610	98512610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7724.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	8.41518151073491	8.62816218745871	8.28942732789688	8.37561036610816	8.85921148501357	8.39991440068567	0.160820979576972	0.513489528805787	0.842597552908258
Merged-chr14-72605018-2	chr14	72604518	72605518	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	104985.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.80123093663063	5.36416071875424	5.82694341908227	5.54420082112801	5.57383084823546	5.58060380231815	-0.201441433676837	0.554477968992992	0.862826181827127
Merged-chr11-82036669-2	chr11	82036169	82037169	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011333, intron 2 of 2)	intron (NM_011333, intron 2 of 2)	1092.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	2.81302154623825	2.83600187116961	2.92265235042047	2.93713053852011	2.95968850816732	3.10941813854476	0.70870688552687	0.301959601967359	0.698647347565553
Merged-chr7-4811594-4	chr7	4810993	4811993	+	802.3154910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133777, exon 2 of 4)	exon (NM_133777, exon 2 of 4)	847.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	6.38691564112174	6.38481713116154	6.24207604740945	6.15584105642627	6.64267270263905	6.75365565708448	0.319847331051595	0.288096024641227	0.685470620286924
Merged-chr10-34287922-1	chr10	34287422	34288422	+	543.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5732.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	3.06936565026205	2.698136110718	2.68047304659832	2.89224363396483	2.89350163960137	3.00701498577753	0.464651982253824	0.535091594201158	0.853401636668045
Merged-chr1-136416448-4	chr1	136415952	136416952	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	-933.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	4.59754211665799	4.83665752122804	4.74162608984423	5.08832863394439	4.97480133711629	4.76828514194902	0.508278430799468	0.202106732505456	0.591773948258361
Merged-chr14-65345239-4	chr14	65344744	65345744	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13432.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	6.9672284638646	6.94207898332726	7.36968322765324	7.01129423692636	7.5109530539692	7.38546274504154	0.332985140089505	0.231793101244025	0.627955992977561
Merged-chr1-152585720-4	chr1	152585223	152586223	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	39494.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.72232392992289	5.83818191696583	5.67055667648477	5.82640025271974	5.77505395681674	5.67807660817923	0.0258704614147472	0.933131121138456	0.985356091252617
Merged-chr13-45623975-3	chr13	45623482	45624482	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	(ATG)n|Simple_repeat|Simple_repeat	116538.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	5.54477617767858	5.69507927738807	5.54875538374811	5.12189070395472	5.24023579828636	5.28236834856454	-0.753893525448637	0.0252588441652892	0.18817601444224
Merged-chr1-91293919-3	chr1	91293424	91294424	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4414.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	4.36075762420044	4.30844767621894	4.87150605926533	3.89339640549825	3.91785984847848	4.27438367967294	-1.35351611695684	0.00848269901889766	0.0897772093569622
Merged-chr1-34822781-2	chr1	34822281	34823281	+	757.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	20269.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.62963955663107	5.55810524971292	5.8589720180432	5.81602783745607	5.58503467235097	5.9198184827823	0.168261345050156	0.605570738754167	0.883581756351046
Merged-chr15-101381941-3	chr15	101381447	101382447	+	811.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11822.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	3.32239807788751	3.82249444432474	3.97105883583771	3.02824483283548	3.19972246898529	3.35027068656399	-2.06317014984959	0.00276935115149773	0.0396272004494966
Merged-chr11-114931264-4	chr11	114930772	114931772	+	982.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	3114.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.96279364479893	6.84298433382594	6.96262779944851	7.16939394039453	6.96741116257782	6.95137351473039	0.171852471010349	0.484618253001881	0.826994448591038
Merged-chr17-27622779-5	chr17	27622286	27623286	+	821.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291046, exon 1 of 5)	5' UTR (NM_001291046, exon 1 of 5)	178.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	7.20859922779485	7.38860006583635	7.59338781240621	7.18961174222712	7.21292645594431	6.91943268119395	-0.415874941880729	0.103064934981369	0.427999556317301
Merged-chr13-117029764-2	chr13	117029264	117030264	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4248.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	2.70090943051339	2.79772982473574	3.05639794071008	2.85456739182385	2.92366471911686	2.95642962441973	0.285005229689062	0.690109851471438	0.917664185493038
Merged-chr9-124027503-4	chr9	124027014	124028014	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	5543.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	5.86961411961434	5.94406367820891	5.92732673525237	4.84289743779349	4.7318381964286	4.90251080823146	-2.20122275542086	3.32723647781299e-10	3.95503846922662e-08
Merged-chr11-106458747-3	chr11	106458244	106459244	+	639.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	29052.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	4.62127963201045	4.20877484280415	4.36203734099912	4.79549101566221	5.2671269436722	4.70027130270031	1.27476334231056	0.0054995576073183	0.0655409896003639
Merged-chr1-136135210-4	chr1	136134698	136135698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3808.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	7.18889018294073	6.83941940721819	7.09684847346948	7.63708205438044	7.43773180250451	7.21748555418755	0.594007272163908	0.0221612499339057	0.172820364058147
Merged-chr10-115315531-4	chr10	115315027	115316027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	64.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	8.52357612961271	8.75247901693481	8.39674026016767	8.52280625326622	8.5593174511527	8.55709927362928	-0.0339251781300973	0.873466343206365	0.970409437516545
Merged-chr5-31054155-4	chr5	31053695	31054695	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-585.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	5.19587085049914	5.46229667762632	5.35074105109221	5.285986663937	5.66541686468929	5.50328426138952	0.307518044759141	0.381650820903357	0.763264949904498
Merged-chr7-80833302-2	chr7	80832801	80833801	+	803.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28807.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	5.61726570525181	5.54276916586437	5.30292491351116	5.69359306968073	5.62177802848376	5.61161638285781	0.258296501335113	0.431317528011328	0.796826573507251
Merged-chr16-30063309-4	chr16	30062812	30063812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2045.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	7.71277005467025	7.51184881417428	7.41971554454339	7.75764081084433	7.48886516853179	7.27031394567129	-0.0459284092892729	0.856296889654086	0.966452601518328
Merged-chr3-130900329-4	chr3	130899840	130900840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169942.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	4.81503691294064	5.02549037808349	4.95434473078478	4.76830326560384	4.88160755707433	4.83599025071809	-0.228692174162515	0.55286846184172	0.861981280760851
Merged-chr2-35498648-2	chr2	35498148	35499148	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37199.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	2.91097672766437	2.73278089363035	3.20394422425022	2.89141457296418	2.77750760805477	3.05645698660729	-0.229862009237583	0.75271289439817	0.938359370105818
Merged-chr4-105291671-4	chr4	105291089	105292089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134242.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.03201430935692	4.89698580258427	5.34099101191939	5.26894924136765	5.37255817033839	5.11821581266012	0.360077212775873	0.336889806558141	0.726861060604748
Merged-chr17-56507827-4	chr17	56507330	56508330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4653.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	6.4170272036974	6.53809433250992	6.19688909057134	6.12103221187897	5.81057410978222	5.71551589092135	-0.848408922108667	0.00581606396816087	0.0681898056450232
Merged-chr8-108767254-4	chr8	108766757	108767757	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52613.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.67413809998022	3.87843807209089	4.05356143662268	3.5447560287299	3.59993833101842	3.69278380078167	-0.867570266461726	0.116546175916044	0.455798750029245
Merged-chr17-35045779-2	chr17	35045279	35046279	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 2 of 23)	intron (NM_013600, intron 2 of 23)	843.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	3.97221210398699	3.58845491642551	3.89114110401134	4.20719488500724	4.15559192895277	3.96174927727025	0.875784989669573	0.0959919987926112	0.413036624032247
Merged-chr5-146818952-4	chr5	146818466	146819466	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-13924.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	7.09234113016916	6.97327367057325	7.12908995616331	6.95775068589597	7.06551406675764	6.87803140706195	-0.134009453708614	0.581532311699993	0.87330603147439
Merged-chr11-113751870-4	chr11	113751375	113752375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	-60.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	8.40451919468294	8.66508256589194	8.47379890724889	8.4868511764621	8.80474524375356	8.67240633367162	0.197696170620518	0.365714354647845	0.750755886042233
Merged-chr19-61021720-1	chr19	61021220	61022220	+	674.0	f0_balb.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	119120.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	2.55330820308112	2.41482716096934	2.56271904397111	2.16874059557747	2.07755417133967	2.38500212105463	-2.24998550851351	0.0196757300132971	1
Merged-chr14-75173250-2	chr14	75172750	75173750	+	679.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	36825.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	3.46186011311556	3.24668715677865	3.33240689996453	3.43053329040452	3.48329712875493	3.226865742489	0.157475230863384	0.797870352013551	0.951830080006073
Merged-chr5-24456063-2	chr5	24455563	24456563	+	659.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	3886.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	3.02474116972355	3.09129509227757	3.37696963083581	3.33168528904316	2.66218535169399	2.99276621704858	-0.612668139821448	0.431067791633393	0.796644918588116
Merged-chr12-100187591-4	chr12	100187102	100188102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045282)	promoter-TSS (NR_045282)	-366.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	8.48893618638235	8.78973390912082	8.35801179896531	8.45424752612673	8.85013139309058	8.30101560976795	0.00124794907267132	0.996088201732539	0.998961028701257
Merged-chr5-100513703-4	chr5	100513173	100514173	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4636.0	NM_001359203	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	5.02320531497336	4.93581907805485	5.00496894352177	5.20469304437771	5.28506912748946	5.0701999621223	0.441275964397589	0.223317092606331	0.618087468987021
Merged-chr10-60390822-2	chr10	60390322	60391322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8904.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.82136156781029	3.87675772854722	3.94420151961679	3.60825927239903	3.59792373821304	3.76879378943316	-0.744242493431081	0.161938985541535	0.535193761745733
Merged-chr6-120187801-4	chr6	120187294	120188294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-6029.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.35102666803107	5.27742512296174	5.81324667230402	5.24189996026529	5.25550957070563	5.26100942303846	-0.46360583911231	0.205648810982101	0.596191022511591
Merged-chr11-82007040-5	chr11	82006576	82007576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28501.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	7.58015626300849	7.27373550864845	7.01064532986591	7.33756109055278	7.3070591387264	7.26249673614056	-0.0231517176931698	0.929247049550164	0.983987942057929
Merged-chr5-43865478-4	chr5	43864970	43865970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3339.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.89037207802784	6.00626928152118	6.32932860768698	5.81020882042854	5.6456669066384	6.14359305682925	-0.365226936428953	0.27062749391267	0.667629387731657
Merged-chr14-61774901-4	chr14	61774402	61775402	+	915.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-92529.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.94476271898179	5.5522244438996	5.80323482308834	5.54716502066932	5.54781347417452	5.57506779256682	-0.405951394405368	0.215126084814825	0.608457502473637
Merged-chr11-20110419-2	chr11	20109919	20110919	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	RSINE1|SINE|B4	2532.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	3.25758315261645	3.51088763041748	3.8654754368122	3.67640210803487	3.52541895485253	3.7444461600401	0.303418036629368	0.618562417756518	0.889457395650025
Merged-chr8-34149754-4	chr8	34149278	34150278	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-3039.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	5.78520074841973	6.13306319780681	5.89815243865488	5.82865270473767	6.2069842945213	6.22271957389789	0.254254473093136	0.423698454621975	0.792142655196722
Merged-chr11-8569093-2	chr11	8568605	8569605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	95430.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.46628609714767	3.16838217928538	3.36243856536022	3.19371890193163	2.9949175311469	3.37913340558888	-0.602934045188929	0.357405338458213	0.743995381828055
Merged-chr11-16589514-1	chr11	16589014	16590014	+	632.0	f0_balb.idr	Intergenic	Intergenic	-81030.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	2.55827688386775	2.68309975647379	2.75371538460764	2.31377490121799	2.52129950081083	2.31472998480507	-1.67850985923703	0.0594045919874793	1
Merged-chr6-72156552-2	chr6	72156052	72157052	+	744.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33355.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.90439350351913	3.37597943882562	4.07636578878161	3.79322927209113	3.40572741436661	4.34436824798316	0.266275034949824	0.690377030597174	0.917823389001164
Merged-chr1-24678610-4	chr1	24678122	24679122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310483)	promoter-TSS (NM_001310483)	78.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	8.95249540550275	9.28669317566026	8.6869488694837	8.84593360902819	9.13957940354375	8.46500425355534	-0.206152815509567	0.449630622515654	0.807913639938726
Merged-chr1-183299346-4	chr1	183298834	183299834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 1 of 9)	RLTR33|LTR|ERVK	-2041.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	7.93508457467878	8.56618618353067	8.35055028923108	7.26122222149452	7.40957200696914	8.2161489001452	-0.863768509130633	0.00884593124898458	0.0924456477474892
Merged-chr5-142413010-2	chr5	142412510	142413510	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	PB1D7|SINE|Alu	11513.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.68251496650453	3.51137048318988	3.76003663069173	3.89015769582625	3.60406037163254	3.82954276446997	0.418230825679516	0.448332929912771	0.807211095970682
Merged-chr2-164360447-4	chr2	164359947	164360947	+	796.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3940.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	5.07979954665746	4.94483855956148	4.40902071748594	4.8791985701377	4.77675135762083	4.27244091481762	-0.393866441195863	0.421344108914698	0.790226764066497
Merged-chr2-116984043-4	chr2	116983556	116984556	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83904.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.08925202453934	6.01467403905356	5.86863132030718	5.5107091170745	5.80948571219198	5.48721486226655	-0.670309990438474	0.037618884441553	0.239787968179312
Merged-chr5-143038368-2	chr5	143037868	143038868	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	B1_Mur3|SINE|Alu	74652.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.05123011818421	4.21946750808676	4.19741977071822	4.07126714755494	3.86343475856947	4.3498608741178	-0.168541252914954	0.736533517602112	0.933163013820123
Merged-chr5-143526898-4	chr5	143526381	143527381	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	1112.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	6.84362250256031	6.88188409665266	6.58801393941109	6.87176553137096	6.86208501555101	7.02496631901084	0.201498309681311	0.432205972129919	0.797270167804312
Merged-chr8-27261258-4	chr8	27260766	27261766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	939.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	6.02121112534637	6.32368915945745	6.00434310237751	6.54748320624017	6.55420933235701	6.34910642233323	0.59223003576559	0.0402915753500237	0.250037450006947
Merged-chr17-44777135-4	chr17	44776649	44777649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357320)	promoter-TSS (NM_001357320)	-17.0	NM_001357320	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	7.46757375448411	7.22274189622515	7.27492634953296	7.52647101794468	7.20518617562773	7.27417529710759	0.0213341109136312	0.9309925580319	0.984748096853363
Merged-chr6-34317581-4	chr6	34317085	34318085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009658)	promoter-TSS (NM_009658)	-96.0	NM_009658	11677.0	Mm.451	NM_009658	ENSMUSG00000001642	Akr1b3	ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1	aldo-keto reductase family 1, member B3 (aldose reductase)	protein-coding	7.31780162517134	7.56681631301665	7.23105247698313	7.49228050419591	7.69383159910757	7.12179145806389	0.122163403874188	0.649374614819239	0.902160587683553
Merged-chr8-33642464-2	chr8	33641964	33642964	+	707.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178648)	promoter-TSS (NM_178648)	-488.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	5.3945659488129	5.36200733019775	5.59565071031385	5.65330722294094	5.7703745712726	5.51732329691889	0.406825201248839	0.216612840032862	0.610088638224921
Merged-chr7-28813165-2	chr7	28812665	28813665	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	2275.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	3.82676803107252	3.37573631531995	4.05596719313318	3.62546573448019	3.70392190086476	3.85069994777831	-0.162012720539302	0.786069527555463	0.948316320373992
Merged-chr1-4858121-1	chr1	4857621	4858621	+	1000.0	f0_balb.idr	promoter-TSS (NM_001159751)	promoter-TSS (NM_001159751)	-207.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	6.81667035087076	6.86712117568979	6.78303562915406	6.82947254559639	6.60090828676839	6.91397014549344	-0.0709084289299696	0.782577086032289	0.946600874757591
Merged-chr1-172205478-2	chr1	172204899	172205899	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	1405.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	4.63205071818937	4.30990191870014	4.63874717369206	4.38404499069258	4.16832456401933	4.0882367602904	-0.806498755046056	0.0852265420321854	0.386417290181674
Merged-chr11-102189612-4	chr11	102189095	102190095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-104.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	7.00159917681808	7.23586187954115	7.30153500151937	7.27015138707223	7.56740676539538	6.90509364150217	0.157225651536041	0.575582101349625	0.871241845502166
Merged-chr13-108015357-4	chr13	108014878	108015878	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29096.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	3.02493076832425	3.3547320243936	3.07823107188141	3.12824018277389	2.97941812974681	3.15103135539018	-0.352738117623921	0.598502279430035	0.880808927175713
Merged-chr2-102400673-4	chr2	102400175	102401175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020267, exon 1 of 5)	exon (NM_020267, exon 1 of 5)	225.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	6.24597649541018	5.91664580290156	5.79831611094752	6.30646340815051	5.6992355012328	5.80762997729697	-0.070055736328576	0.840943280917189	0.962832831784718
Merged-chr2-32959529-2	chr2	32959029	32960029	+	776.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_199302, exon 2 of 25)	exon (NM_199302, exon 2 of 25)	1726.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	2.54223101514158	2.60392592700809	2.61071584045448	2.65375102711055	2.52510392753362	2.86520802694375	0.540058746270553	0.482523490872361	1
Merged-chr4-150568356-1	chr4	150567856	150568856	+	694.5	f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83818.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.33517849410048	5.18324258099998	5.40103351969323	5.43693593826701	5.61768822364611	5.37291155243938	0.361929432200682	0.289466723143947	0.687129406879913
Merged-chr11-50026940-4	chr11	50026448	50027448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	1617.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	6.42919752603677	6.66958135474177	6.59432448417645	6.42711868132466	6.66169934136729	6.34255074181553	-0.116951113531475	0.672735993515145	0.910949422492829
Merged-chr8-77421769-3	chr8	77421278	77422278	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95278.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	4.23348010749102	4.09232888479837	3.84583586456397	3.77797235215853	3.8084989918274	3.63728969969619	-1.0088081722165	0.0597597681656405	0.316477265117529
Merged-chr9-65533573-4	chr9	65533070	65534070	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	46517.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.27673300519749	7.16213863623685	7.35498947897811	7.03630411483077	7.44597279346579	7.19609513384397	-0.0282759276018303	0.910697034529019	0.979933515874906
Merged-chr2-102161424-1	chr2	102160924	102161924	+	668.0	f0_balb.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	25036.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.07193710185354	3.5727244298263	3.358986670741	2.94701104001643	2.90884483991787	3.265587428216	-1.32713089889554	0.0599994505633394	0.317073284320274
Merged-chr11-70970071-4	chr11	70969574	70970574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	-101.0	NM_001276406	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	6.74867229086438	6.80679984025689	6.88507928358659	7.06853011064026	7.23147342752327	6.76046361458848	0.360673726324736	0.171103250548916	0.549054232994131
Merged-chr14-67188988-4	chr14	67188489	67189489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44303.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	6.27745809087089	6.59505762290505	6.60230428792429	6.29043173264378	6.55498025315849	6.21398114919432	-0.202380461326659	0.487262403850563	0.828377944172883
Merged-chr8-56065303-2	chr8	56064803	56065803	+	705.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	124478.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.48039935560786	3.44735049405008	3.57638656317679	3.55997004890928	3.56896052952287	3.59371076131197	0.271880140965003	0.628027283202382	0.893508518159715
Merged-chr2-12059597-3	chr2	12059074	12060074	+	845.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-241672.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	3.89708982436601	4.2461548676812	3.92425473120532	4.10933741135567	3.9608431851884	4.36074812918776	0.303171582003284	0.556254694003619	0.86357390983939
Merged-chr6-136466123-4	chr6	136465637	136466637	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50568.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	5.70580387263531	5.92784922912295	5.78269488334349	5.74492299176938	6.02473239025946	5.73973433058022	0.0765829363029873	0.808442523587027	0.954683711776353
Merged-chr4-126201880-4	chr4	126201388	126202388	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	822.0	NM_001356455	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	6.73464037048287	6.79291300514568	6.67303046950508	7.16224974504624	7.31473439773892	7.17233798004364	0.738759015763278	0.00230806323457353	0.0344854238862263
Merged-chr11-11788813-4	chr11	11788279	11789279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20183.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.32704289497508	4.5832306416342	4.26259527975667	4.56204788174481	4.3156843314778	4.08018431737811	-0.167203879919035	0.726967531239411	0.930086065338964
Merged-chr2-121140527-4	chr2	121140044	121141044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177846, exon 1 of 1)	exon (NM_177846, exon 1 of 1)	116.0	NM_001290812	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	8.10953377642525	8.37019018223848	8.18549943177984	8.36883902024792	8.61709895994479	8.13852790390309	0.23591141812393	0.317730974326582	0.711518266188251
Merged-chr11-116030355-5	chr11	116029889	116030889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	73.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	9.57549380164811	9.66364509417055	8.84179599531558	9.08004797558835	9.49274544796474	8.96697634774072	-0.285849544344452	0.31862042253574	0.712586160955621
Merged-chr2-154597616-4	chr2	154597119	154598119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 1 of 3)	MTC|LTR|ERVL-MaLR	6054.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	5.12734394867797	4.86656916299767	5.01753650621054	4.94470144847288	5.33392535007459	5.36930162938399	0.461595768268369	0.227907876230946	0.622981752321771
Merged-chr17-34932743-2	chr17	34932243	34933243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 3 of 6)	exon (NM_010893, exon 3 of 6)	1490.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	5.3156927937242	5.15050261396227	5.30250368207428	5.1222704395682	5.12906447245025	5.56186531409687	0.0372306636470586	0.919490306866612	0.982034101943453
Merged-chr6-5425654-4	chr6	5425120	5426120	+	894.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355662, intron 3 of 4)	intron (NM_001355662, intron 3 of 4)	35210.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	2.73977756177657	2.43318222107578	2.60740315252468	2.82123948811756	2.43108404258823	2.74539266853435	0.409296420961887	0.615150457251719	1
Merged-chr18-46595867-3	chr18	46595393	46596393	+	703.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025698, intron 1 of 2)	intron (NM_025698, intron 1 of 2)	1642.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	3.51186709841397	3.87341258315269	3.96336682697272	4.05120427809265	4.02801313304343	3.72455255471104	0.482151855466508	0.386794625278818	0.767227041888959
Merged-chr13-62624144-4	chr13	62623620	62624620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324406)	promoter-TSS (NM_001324406)	62.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	4.92782777581061	4.89718624058219	4.81784018057279	5.6307071408917	5.43825948080138	5.34925112799399	1.21822398092469	0.000742455659813531	0.0143071446368143
Merged-chr16-35764522-1	chr16	35764022	35765022	+	727.0	f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	4834.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.7729335231867	5.78078963115713	6.04972288131318	5.5761400550175	5.60113665351589	5.81809224100953	-0.368837339212326	0.24649274362535	0.64358792567235
Merged-chr5-150155656-4	chr5	150155160	150156160	+	859.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104270.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.97043108850162	3.16472537987536	3.13398992446905	3.15033470376207	3.0243654096784	2.83452939912363	-0.353097419001534	0.609876829084842	0.885331420927875
Merged-chr13-56165766-3	chr13	56165265	56166265	+	824.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	13120.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.14223906835826	3.1440322990163	3.16301969842284	3.0675375926509	3.101761281302	3.28972118085767	0.00901543498729979	0.988748619544454	0.997426973334006
Merged-chr5-23114402-4	chr5	23113891	23114891	+	935.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029990, intron 2 of 2)	intron (NM_029990, intron 2 of 2)	319962.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.82391254852479	5.01286008634868	4.6668765923741	4.29247922006211	4.44596074533257	4.65308948878539	-0.920117260367157	0.0321838689839869	0.217883198419513
Merged-chr7-91740944-2	chr7	91740445	91741445	+	781.0	f0_balb.idr|f1_balb.idr	intron (NM_011807, intron 3 of 22)	MTD|LTR|ERVL-MaLR	-321449.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	3.03250567720219	3.06155234558338	3.10235909358337	2.99740616535689	2.78316246419893	3.05871582624165	-0.560663736460099	0.413052511110333	0.78475827346033
Merged-chr14-27397784-4	chr14	27397265	27398265	+	867.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 9 of 10)	intron (NM_027871, intron 9 of 10)	-31069.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	4.16527957414073	4.16771657881018	4.41250477222739	4.15053803085636	3.96925761190842	4.31369667785352	-0.290552622016817	0.546368241538052	0.858684811157038
Merged-chr2-129175809-4	chr2	129175328	129176328	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4845.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	3.81587252986584	3.64879468483882	3.71711516119163	3.52442236646797	3.28994151514088	3.93006645873641	-0.439858253022068	0.468505603954941	0.818673566064062
Merged-chr10-39458994-4	chr10	39458488	39459488	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	89189.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.43250644096624	3.34678078512927	3.32684175220718	3.4813703083411	3.43436585836686	3.56309828540947	0.450663662435263	0.440696742409724	0.80190131151537
Merged-chr7-45025717-1	chr7	45025217	45026217	+	645.0	f1_c57bl6.idr	Intergenic	Intergenic	6120.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	2.21973431929099	2.40335627214379	2.42950056068351	2.16355142574356	2.29781344709885	2.17678778779115	-0.919795352514374	0.299290955971218	1
Merged-chr18-67873680-3	chr18	67873176	67874176	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 41 of 45)	ORR1E|LTR|ERVL-MaLR	-59497.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.55981467680722	3.5439081517766	3.79602040274105	4.51470568779586	4.76903235264625	4.82628115670755	3.33303585100356	1.52858149289447e-09	1.63092203698853e-07
Merged-chr2-30464589-2	chr2	30464089	30465089	+	896.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9610.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	5.10053526380556	4.63368859666872	4.345038158981	5.10271289646462	5.02604875949473	4.51771099095976	0.380550725196601	0.435068969363336	0.798753078814766
Merged-chr11-54958759-2	chr11	54958259	54959259	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	4181.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	3.32697948480682	3.24061960822423	3.2685342767874	3.20020970149292	3.07375765750612	3.16660885823732	-0.570245767315279	0.364235751102531	0.749666877743191
Merged-chr16-22444117-2	chr16	22443617	22444617	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	6.18849123240796	5.79277198653265	6.03689769422984	6.1305751386681	6.13331989435256	6.0753504156157	0.171112466778391	0.56956759845744	0.8688875602138
Merged-chr17-5494873-3	chr17	5494417	5495417	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	2317.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.55292468567586	6.57737561009476	6.41599671837968	6.42364221860363	6.36704807201198	6.19115187571279	-0.30086233441115	0.26718460447945	0.664562020632691
Merged-chr17-17862430-1	chr17	17861930	17862930	+	630.666687	f0_balb.idr	Intergenic	Intergenic	-7242.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	3.68153620100561	4.11476969432962	3.59682389291881	3.55282423546511	3.30952361945924	3.55657805820857	-1.23134120902399	0.0410662513945747	0.252875370263599
Merged-chr3-21937442-4	chr3	21936954	21937954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139198.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.12576746991293	6.20779967765635	6.01696058029674	6.29834048086064	6.38693482147923	5.95704872812563	0.195078991792291	0.513779094382678	0.842787325048798
Merged-chr10-80071257-4	chr10	80070763	80071763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 5 of 31)	(T)n|Simple_repeat|Simple_repeat	4176.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	6.59731438810418	6.3247659519028	6.36898312674641	6.33117768505951	6.51591020059965	6.2475404452644	-0.0979654114939996	0.728266181716879	0.930466671502904
Merged-chr19-45015728-3	chr19	45015260	45016260	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145503, intron 1 of 4)	CpG	550.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	3.56530081967806	3.44920898427955	3.69373369704604	3.5210816239014	3.22754054619654	3.14572132539758	-0.982906152367991	0.11919225757763	0.461591239342801
Merged-chr5-72270576-2	chr5	72270076	72271076	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	67233.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	2.91038587334234	2.95924731547818	3.11389636025626	3.24664841988298	2.68844442081784	3.18623413268199	0.303117124150333	0.682517288864594	0.915100674772977
Merged-chr13-111797733-3	chr13	111797235	111798235	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11258.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.96345084287733	6.87403822678807	6.66629590619272	7.11884553758889	7.0128481655392	6.83835077942979	0.232690604922505	0.365564514471496	0.750706881219779
Merged-chr15-3270997-4	chr15	3270486	3271486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	9.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	6.2540525590112	6.30578659949684	6.47806623679969	6.73873862943613	6.71871273026296	6.67231695420637	0.595055694556495	0.0231004838901126	0.177690003056353
Merged-chr19-47460766-2	chr19	47460318	47461318	+	597.5	f0_balb.idr|f1_balb.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	3593.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.7934270945441	3.91356326436798	3.74303604197993	3.27273638402902	3.29772142355093	3.71174564071975	-1.39834169704816	0.0204695578116768	0.163958376656784
Merged-chr1-191199241-3	chr1	191198725	191199725	+	939.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15892.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	4.55131852592679	4.32144801954206	4.17469303218331	4.36550778745854	4.26472746624112	4.09327422785255	-0.304936866235619	0.518864167284478	0.845497711286192
Merged-chr5-36705941-4	chr5	36705432	36706432	+	850.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9911.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	3.77413941009788	3.67903323303485	4.11887872021085	3.68817816401868	3.55016760263756	3.82350553913986	-0.578185477773753	0.300086092856682	0.69683151325367
Merged-chr5-67437665-3	chr5	67437160	67438160	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9861.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	2.80184758360712	2.8216824343831	2.76455162088613	2.47951261561601	2.27339146121842	2.45125043408148	-2.72860770980776	0.00291964749489135	1
Merged-chr13-23585971-4	chr13	23585463	23586463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	7.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	7.21588853554496	7.38734623257643	6.99767958494591	7.11509205317992	7.5455193581632	7.29687899522948	0.177808339709588	0.500659620665881	0.835182151490911
Merged-chr7-16257992-4	chr7	16257490	16258490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	1348.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	7.87664021206115	7.64510586579973	7.70947501234594	7.44957477199018	7.8049089547806	7.62029184409673	-0.159944236741672	0.500149348598239	0.83493353258491
Merged-chr18-68220018-4	chr18	68219470	68220470	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Lx5b|LINE|L1	-7976.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.78893754082452	5.8297136969374	5.48588508409428	5.4851662010774	5.49770209643368	5.57854109314743	-0.379159392021461	0.245700354234516	0.642799404972351
Merged-chr13-112658802-1	chr13	112658302	112659302	+	586.0	f0_c57.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1964.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	2.25829661490878	2.36490128276783	2.25174030462892	2.39211020183614	2.40119920177397	2.58462145744372	1.05580062023698	0.209757115669385	1
Merged-chr14-73141282-2	chr14	73140782	73141782	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1228.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	6.09284045470653	6.31682795031212	6.47060312594422	6.37625083983815	6.25646053645931	6.28952472806832	0.0213328562435764	0.940310895848694	0.98679988171953
Merged-chr3-87910785-4	chr3	87910337	87911337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3987.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	6.31391496491085	6.1093705124775	6.2500364377167	6.45761547132298	6.21448781617653	6.18529463269927	0.11239102895426	0.693551978575478	0.918960880648635
Merged-chr9-110452711-4	chr9	110452212	110453212	+	958.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 2 of 9)	intron (NM_001360306, intron 2 of 9)	23982.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	4.85249243733953	5.18277496956231	4.8890778896674	4.90996295572865	5.03442119181496	4.8392893453312	-0.114600847087475	0.769286087637175	0.943096029055944
Merged-chr8-111300346-4	chr8	111299832	111300832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146218)	promoter-TSS (NM_146218)	-110.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	6.23282223530267	6.46950833525368	6.3907011720794	6.46341191017475	6.82020886371485	6.59336161560301	0.440051308019778	0.115082244894363	0.452819001899566
Merged-chr4-53065979-2	chr4	53065479	53066479	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 30 of 50)	exon (NM_013454, exon 30 of 50)	54099.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.11073234324177	2.2563081427927	2.13675818520954	2.2803078604533	2.2125100038163	2.46840943855556	1.04510812156139	0.239009636061462	1
Merged-chr19-46709211-3	chr19	46708705	46709705	+	819.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020577, intron 4 of 10)	intron (NM_020577, intron 4 of 10)	1762.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	3.92665998523056	4.04772926455502	4.0599072308764	3.35599368779541	3.10339151054857	3.58830725744639	-2.50085777772791	9.60622306846118e-05	0.00274113377599629
Merged-chr10-127521963-3	chr10	127521412	127522412	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028230, intron 1 of 11)	intron (NM_028230, intron 1 of 11)	532.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	3.80188915343058	3.65848910989826	3.87741623768322	3.84484749346445	3.45796337755514	3.79924017804408	-0.242380962051825	0.665090081246036	0.907732432508614
Merged-chr4-139248820-1	chr4	139248320	139249320	+	673.0	f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	54709.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.9809147362259	5.62534003598676	6.25696090070752	6.39315460807219	6.20866627027112	6.0903632818664	0.462918233931578	0.155295777299434	0.524873107662021
Merged-chr15-64312818-4	chr15	64312315	64313315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-142.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	7.13406206867706	6.92725236702984	6.98994027592234	6.9783157849681	6.77553443182921	6.63569664249979	-0.326162181344137	0.205867039512774	0.596480182734923
Merged-chr2-36278920-4	chr2	36278417	36279417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44C|DNA|TcMar-Tigger	48491.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.10213744824866	5.22100266373308	4.94992563471287	5.2414371926916	5.1506425651018	5.05294079021596	0.102527623432142	0.779105368486343	0.945710994231145
Merged-chr7-28338840-4	chr7	28338344	28339344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-125.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	7.89931947988779	8.00607946899051	7.80171622914741	8.14338692793535	8.32013269549256	7.97981742900522	0.358072232238664	0.111318708906379	0.445743594597859
Merged-chr4-46305549-1	chr4	46305049	46306049	+	602.0	f0_balb.idr	Intergenic	Intergenic	-38645.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	5.15416186896991	4.87252263824163	5.09602371449225	4.40947336778861	4.26352589436492	4.62157996925558	-1.46335727465101	0.000537520866792906	0.011106539926522
Merged-chr13-49221280-2	chr13	49220780	49221780	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5254.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	2.21219006962275	2.46202344191339	2.35972913258457	2.56374870238106	2.35519599888915	2.56411649507567	0.906490094335326	0.285135035025359	1
Merged-chr17-30494468-3	chr17	30493966	30494966	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	81821.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	3.52806713391568	3.46203041461028	3.12816503816275	3.35613954020128	3.48605314027733	3.5538418113026	0.280156162084485	0.656463822890565	0.904654860421566
Merged-chr5-120501287-2	chr5	120500802	120501802	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	RSINE1|SINE|B4	2321.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	3.56552245291098	3.69869813409299	3.6699061828124	3.78855912664104	3.50433625209497	3.73996313122735	0.110190561503071	0.842699571075223	0.963161613177542
Merged-chr3-127770031-1	chr3	127769531	127770531	+	677.0	f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	10496.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	6.06927500756108	6.29619136182085	6.01904074199623	5.88654858800742	6.02304554617911	6.12421319378436	-0.221868962072983	0.45459759383314	0.810475441600934
Merged-chr7-141172831-4	chr7	141172327	141173327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172100)	promoter-TSS (NM_001172100)	24.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	8.07517322401954	8.26167055238548	7.79929438679911	8.04124889332584	8.28759188511791	7.9630231372954	0.0620448243053378	0.798336376602689	0.951930937621884
Merged-chr8-124586822-3	chr8	124586318	124587318	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023709, intron 1 of 19)	intron (NM_023709, intron 1 of 19)	10707.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	2.43261651581832	2.19446212172804	2.467877982711	2.13044073422142	1.98577057180339	2.28842863684426	-1.73602015190178	0.0720627082190407	1
Merged-chr1-64304626-2	chr1	64304126	64305126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-183237.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.10650689855403	7.0593349414605	7.26889813409253	7.2252734043534	6.88718468871154	7.17623883498661	-0.0670690576155384	0.79051661499862	0.949510125158813
Merged-chr1-55049270-4	chr1	55048765	55049765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3505.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	3.94801121980842	3.87540442659414	4.06357034823668	4.05366992357451	4.01863591561474	4.03753651735062	0.231341304204762	0.636748398389344	0.89723915288953
Merged-chr5-67829046-2	chr5	67828546	67829546	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	18385.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.8094264569162	5.53072590399852	5.05055428419792	5.95098961589349	5.5886425705272	5.59522184970576	0.386808784215235	0.316230530930986	0.710334206670774
Merged-chr16-94546193-8	chr16	94545663	94546663	+	903.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19534.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	5.86147615496055	5.74692404039512	5.23204530269798	5.91270478719995	6.16430401189516	5.74513891938892	0.543945375198195	0.130020423490505	0.482195010397444
Merged-chr17-87304546-4	chr17	87304053	87305053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	21667.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	7.35693597132499	7.6526358680654	7.28600969127882	6.86439904867394	7.15113293597646	6.70051006049954	-0.771878734196467	0.00443502538123836	0.0562459368879868
Merged-chr7-19676013-4	chr7	19675502	19676502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001309799, intron 1 of 3)	intron (NM_001309799, intron 1 of 3)	1939.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	7.46995545705008	7.65477609458341	7.6640195439178	7.55706086110352	7.72207802015643	7.35849025198569	-0.0501148286352877	0.833377757865	0.961070491919313
Merged-chr3-41245096-4	chr3	41244580	41245580	+	937.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162034.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	5.68851540405701	5.70805177178817	5.23299621067311	4.48771961397246	4.34716733778892	4.65064412883892	-2.3945870947451	4.20003158098241e-09	4.16043128321886e-07
Merged-chr6-113643636-2	chr6	113643136	113644136	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	5169.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.75091359246389	6.03643153893758	6.11732234133888	5.93983939333321	6.10255673246497	6.33304561991738	0.269968206296158	0.386552762897328	0.767131316757601
Merged-chr13-12028369-2	chr13	12027869	12028869	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	78576.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	2.57882200262846	2.50469447158583	2.77883826153687	2.32902636031044	2.48604060008175	2.61343645807537	-0.839890300727369	0.304479130914166	1
Merged-chr1-120247344-4	chr1	120246768	120247768	+	800.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	L1MB7|LINE|L1	18012.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	3.35754737397371	3.03628308979542	3.2474523174875	2.94803763246446	3.02817163829608	3.08936434174946	-0.876089047971757	0.191170445413901	0.577822466760773
Merged-chr5-118380673-5	chr5	118380188	118381188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135461.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	7.06333829958315	7.38148884527889	7.07105695037042	6.94830835257935	6.89678137337404	6.57386859732688	-0.548010749000455	0.0410799969563515	0.252936538903663
Merged-chr19-8920427-4	chr19	8919935	8920935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	42.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	7.67940946408003	7.31130566221228	7.54265328983295	7.68039396614576	7.50850602581768	7.31206307234714	-0.00873102466683305	0.972118166438755	0.993868590220018
Merged-chr11-52362832-2	chr11	52362332	52363332	+	715.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	1970.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	2.51917679956273	2.61564684722877	2.62296532932196	2.66490932714738	2.64489020442962	2.8170677441676	0.682893221376635	0.36494023368233	1
Merged-chr13-49252913-3	chr13	49252393	49253393	+	668.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1-int|LTR|ERVL-MaLR	-4187.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.46737489006588	4.80602103321984	5.10427335801953	4.75184669676382	4.72470556276872	4.97497984704907	0.0173929615892332	0.96791792472336	0.992633833139547
Merged-chr1-180263650-4	chr1	180263158	180264158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-7358.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	5.6665244465977	5.62524775543333	5.83592855139911	5.78529195449504	5.74177605994164	5.72172607530308	0.0843895424690755	0.785207357929933	0.947850129107983
Merged-chr11-106037608-3	chr11	106037051	106038051	+	641.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027946, intron 1 of 6)	intron (NM_027946, intron 1 of 6)	679.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	5.44463260810575	5.58082953887654	5.60321735611436	5.87643835968701	5.99348569039478	5.87338044980837	0.688692482658509	0.0258942977901682	0.190777145992026
Merged-chr7-101897899-2	chr7	101897399	101898399	+	621.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291352, intron 2 of 5)	intron (NM_001291352, intron 2 of 5)	1568.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	4.91342335016702	4.616823720459	5.10705092727865	5.08058703558197	4.96358591093183	5.13854070371646	0.379438950271647	0.338667602781824	0.728588578553954
Merged-chr6-7967622-3	chr6	7967098	7968098	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122374.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	2.87341729062916	3.25718495735612	2.93931323253129	3.03067276399404	3.22056765031112	3.30636427226655	0.642501812722404	0.359383453595159	0.745576403878179
Merged-chr19-28678717-1	chr19	28678217	28679217	+	581.0	f0_balb.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	493.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	3.96711430139119	3.88248300499879	3.90929195639294	3.3447068795361	3.2605271630563	3.57129671374331	-1.95675083558124	0.000914169365299796	0.0168102109498045
Merged-chr3-136790339-1	chr3	136789839	136790839	+	793.0	f0_balb.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	120273.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.29956918046137	3.26186775468995	3.34506599475111	3.0385269649795	2.96370734808094	3.13481851983449	-1.14358316544951	0.0779817080060222	0.368760056817748
Merged-chr17-33902605-4	chr17	33902122	33903122	+	866.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2513.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	5.35165691754034	5.54477645132001	5.90400648589696	5.64934631234823	5.77228404056192	6.13099638287006	0.45509572091407	0.199247231409012	0.587656445168051
Merged-chr2-160365658-4	chr2	160365116	160366116	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	1449.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.83340192698903	7.00450761524544	6.96251846963866	6.913783492553	7.02926057746605	6.89407092205017	0.0256837733521525	0.916550598000728	0.981312252061916
Merged-chr2-4572882-2	chr2	4572382	4573382	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	13128.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.3434037524404	5.34394226408326	5.72492348626853	5.6944119566115	5.63735467099643	5.85782032217979	0.481764293198216	0.152299068822173	0.520263755512759
Merged-chr1-89466529-3	chr1	89466007	89467007	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	MTEa|LTR|ERVL-MaLR	11696.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	3.07623806044469	2.83178021565704	2.94440029126548	2.8576126989298	2.82959589952781	2.7680706463343	-0.664854848379702	0.350211115876302	0.738254117598179
Merged-chr1-184734421-4	chr1	184733848	184734848	+	818.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1855.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	5.93418855682801	5.60508264198345	5.77773102848886	5.50734354267924	5.64522113999339	5.48175042783022	-0.416358856746608	0.20253927506349	0.59252027125208
Merged-chr14-104867740-4	chr14	104867238	104868238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	228591.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	4.57631142971639	4.60943900897356	4.54208464592699	4.63443923680865	4.9479212773427	4.56665996844688	0.384022197202004	0.362949530406273	0.7485142520149
Merged-chr17-23981304-2	chr17	23980795	23981795	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6065.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	6.3578108386386	6.23348343819624	6.52662419260514	6.50670346446369	6.68113230960798	6.30618538923897	0.239893415402505	0.397826357483421	0.774593722474986
Merged-chr18-36540747-3	chr18	36540236	36541236	+	777.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271546, exon 20 of 22)	exon (NM_001271546, exon 20 of 22)	12584.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	3.58612892710379	3.61909526262841	3.46529684666695	3.41109250567704	3.78162647335561	3.80039561770389	0.39521010940566	0.495712615232815	0.832647936932283
Merged-chr14-120453790-4	chr14	120453311	120454311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-24650.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.12871603990324	4.95231516343709	5.01109143366913	5.03040897897948	4.93755347213494	4.45029468139686	-0.414703546013536	0.323136722846629	0.716523928970614
Merged-chr10-77291269-4	chr10	77290771	77291771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004429, exon 11 of 11)	non-coding (NR_004429, exon 11 of 11)	31971.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	6.32615835238208	6.64846070859622	6.17260315568238	6.65036566840248	6.51268100541464	6.18874880196348	0.104454044536693	0.732735482942032	0.931858722659821
Merged-chr4-152447938-3	chr4	152447482	152448482	+	763.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010598, intron 1 of 15)	intron (NM_010598, intron 1 of 15)	873.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	5.14258957971087	5.3284971746889	5.19819148373259	4.81179052910023	4.4554424537737	4.54496266532909	-1.37278207817506	0.000615612049055021	0.0123639506101304
Merged-chr12-16588858-4	chr12	16588364	16589364	+	906.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130412, intron 1 of 20)	intron (NM_001130412, intron 1 of 20)	906.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	6.0070864187932	6.1097361515055	5.69040476931623	5.35789033853077	4.9186177298831	4.77425157077806	-1.73896631720734	6.41760886707846e-06	0.000274407193531277
Merged-chr2-129307442-3	chr2	129306958	129307958	+	704.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	2514.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.80309566894486	6.49936551886584	6.63200792602779	7.06022152796848	7.37234160322887	6.85258495556199	0.727125986203058	0.00906486092620579	0.0940133301692299
Merged-chr6-97506480-4	chr6	97505983	97506983	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-18663.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.63264271955389	4.54111477195945	4.4691783218123	5.00392016431258	5.07952780449692	5.2391390282105	1.24339262510173	0.00177979400387628	0.0282203891140472
Merged-chr11-102435397-2	chr11	102434904	102435904	+	802.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_008175, exon 10 of 13)	exon (NM_008175, exon 10 of 13)	5082.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	2.68520469399622	2.67868328779213	2.90575794918377	2.85007901837073	2.68594851062607	2.79920048541205	0.118329304492043	0.871234187445444	0.970222087171093
Merged-chr2-27319491-2	chr2	27318991	27319991	+	875.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-72188.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	4.29285641489974	4.09715028160661	4.67795876976596	4.38569984787678	4.18605217934427	4.59640495733249	0.0624147320586718	0.898578596216223	0.976398924551551
Merged-chr19-16774061-2	chr19	16773561	16774561	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	6872.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	4.05455078670202	4.29658490009128	3.87512078090088	4.5883854457469	4.41973590013656	4.85929683565977	1.37721462246861	0.00611717417014477	0.0707432700972072
Merged-chr11-90245825-4	chr11	90245342	90246342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3634.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.97050031347897	6.72327158293185	6.64265167823709	6.37494877997038	6.60756710934309	6.52945049260851	-0.445777437584139	0.0997712006755402	0.421195437128886
Merged-chr11-73025292-4	chr11	73024806	73025806	+	685.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	6298.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	4.4563974000978	4.5046306581754	4.50931495600465	4.43335533708201	4.51902224872696	3.99944590825873	-0.35431148660879	0.456432439952023	0.811641875260239
Merged-chr2-165960042-4	chr2	165959598	165960598	+	759.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32539.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.68775366453801	4.74042802438024	4.74362361828475	4.52934302579038	4.75531775886715	4.80894558363639	-0.0493806532728546	0.902937448452605	0.977658983455749
Merged-chr15-64045455-2	chr15	64044955	64045955	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	14309.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.53406166449103	5.22079834267094	5.17089036897097	5.45173077348306	5.52373398908113	5.39989473239052	0.265797163931254	0.447380567595059	0.806404141026781
Merged-chr1-150392132-2	chr1	150391632	150392632	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133780)	promoter-TSS (NM_133780)	-706.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	6.24664146845803	6.66913071838928	6.35627514151529	6.52630122590719	6.74570605567251	6.20691449369789	0.132900043566055	0.665993656868843	0.907955574867489
Merged-chr5-146806060-4	chr5	146805536	146806536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11080.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	7.64495661921764	7.48161570828348	7.43799205484356	7.64937820156728	7.92262054176618	7.53661738634922	0.281272328568736	0.242134799292515	0.639198996812551
Merged-chr14-57345415-2	chr14	57344915	57345915	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 3 of 7)	(TG)n|Simple_repeat|Simple_repeat	53068.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	4.22143103771222	4.75620271082895	4.52553775328875	4.15586242638336	4.20267429672559	4.33877062547118	-0.760259110791671	0.10888678706948	0.440888164402789
Merged-chr11-118234647-4	chr11	118234127	118235127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13965.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.28300996208699	8.14250073559539	8.13033753486922	8.05426342110785	8.48325888159686	7.86634380693392	-0.0236140055182784	0.925418958864894	0.983183533267328
Merged-chr9-118858661-3	chr9	118858132	118859132	+	697.3555299999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-67904.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.26960646778085	4.12454068665484	4.40835811764448	4.14756065439267	4.02678321273452	4.17252697834004	-0.428362999375331	0.36490615776482	0.750147286220328
Merged-chr16-97850725-2	chr16	97850225	97851225	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	502.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	5.13174039626794	4.99656891963048	4.86693164161693	4.87450627024428	4.95560761416494	5.04171550525407	-0.117243084646031	0.756267436981017	0.939545863427369
Merged-chr3-65518034-4	chr3	65517533	65518533	+	961.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10414.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	3.29342959310061	3.44008426048085	3.14434813205698	3.42563618567581	3.3816534477948	3.45226601819064	0.438069221207975	0.476947070774692	0.823048451178624
Merged-chr1-161496415-5	chr1	161495958	161496958	+	776.58667	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 1 of 2)	intron (NM_183391, intron 1 of 2)	1801.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	3.85472766402129	3.45170290275126	3.68264806227488	3.71109695515463	3.94048555096695	3.8560802022512	0.545557194383332	0.329607555739248	0.721408142613596
Merged-chr5-16502630-2	chr5	16502130	16503130	+	906.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50865.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.66846453641732	3.61470241335	3.25881329200511	3.22844707354481	3.36367137223743	3.39185935364656	-0.773576751332837	0.214464028315016	0.607538973573768
Merged-chr13-4662572-4	chr13	4662072	4663072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53408.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.46330436301815	6.60686530860065	6.35355117662003	5.88697800990456	6.0495400852815	6.27763274501083	-0.684543084960719	0.0183835674600632	0.152941212821122
Merged-chr13-119616121-3	chr13	119615678	119616678	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7641.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.68350248981702	4.92679401592676	4.58203653314636	4.01359627814804	4.54128785630839	4.34153515431162	-1.02786659224556	0.0318884701008542	0.216549075340886
Merged-chr7-64341918-4	chr7	64341410	64342410	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	32185.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.44419033935908	6.52401723657791	6.56145218602059	6.7078270354138	6.74643266516118	6.89476747207846	0.434003423060725	0.0908387054422182	0.401088193283953
Merged-chr10-80742974-2	chr10	80742474	80743474	+	770.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-699.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	3.79430410738494	3.93290424800565	3.95856650778501	3.96646977355697	4.03257358211209	3.82541885454064	0.173882483246545	0.732378276044475	0.931743189913593
Merged-chr9-80164977-4	chr9	80164511	80165511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039546)	promoter-TSS (NM_001039546)	-23.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	5.46016808735602	4.82491877433198	5.06946593216715	5.51812756564282	5.13464342771282	5.20425758911692	0.294173052933195	0.468763869785054	0.818701612865445
Merged-chr18-12190357-2	chr18	12189857	12190857	+	596.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029623)	TTS (NM_029623)	21627.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	2.62455876877757	2.48352222218201	2.71231468021927	2.58374823685405	2.44217232643	2.78512552864253	-0.00888636872975759	0.990991502247572	1
Merged-chr8-75152076-2	chr8	75151576	75152576	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42567.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	5.82491555539012	5.81505978748461	6.15272218472191	6.36030399798609	6.34370918635392	6.54265699380483	0.821412714373277	0.00517313364965593	0.0626012368703565
Merged-chr13-23744510-2	chr13	23744058	23745058	+	927.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175653)	TTS (NM_175653)	963.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	3.6630778322243	3.43812270379421	3.63386390661837	3.73676235947049	3.92713205038058	3.704813561113	0.744054871328385	0.179324995741969	0.560844737669526
Merged-chr14-120394978-4	chr14	120394456	120395456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360379, intron 5 of 6)	intron (NM_001360379, intron 5 of 6)	-83505.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.02632956156413	5.05258170010657	5.0603788778046	5.0174810463231	5.05594135284248	5.1578630094811	0.0607866929234358	0.866571848283209	0.969097646017731
Merged-chr5-96222113-4	chr5	96221525	96222525	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039084, intron 2 of 6)	MLT1H|LTR|ERVL-MaLR	11910.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	4.99018166712547	5.28446713918381	5.29109154482475	4.82056186437493	4.53756693549438	4.65117638196437	-1.15351346099743	0.00383316175556872	0.0503631333266006
Merged-chr9-113745585-4	chr9	113745080	113746080	+	855.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	4107.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.16875399736886	4.99217367354064	4.87782557576992	4.95862803237817	4.92809980130273	5.0525474909217	-0.107113441003488	0.776164413907685	0.94480820353868
Merged-chr7-127572758-2	chr7	127572258	127573258	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-590.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	6.17315578869998	6.58458460676684	6.2238037358279	6.41651537194891	6.31800680216929	6.01143932271534	-0.130878498672277	0.669818831717991	0.909754874752292
Merged-chr2-160622086-4	chr2	160621585	160622585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23812.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	6.44270097770387	6.29347952068721	6.72380961663371	6.12719397979358	6.39649106265978	6.36879789469633	-0.302310417002616	0.301181762011714	0.697863295363654
Merged-chr16-70414917-4	chr16	70414421	70415421	+	623.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	MER34A|LTR|ERV1	100972.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.07654545859957	3.09719190411312	3.21123533521777	3.29710879908971	3.43429917423099	3.60369573422828	1.31741764575784	0.0364444709744721	0.234929620455832
Merged-chr16-33749829-2	chr16	33749329	33750329	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-44208.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.92227265406252	4.08249136175009	3.96689639444975	4.02005749826231	3.90938657544596	4.08348029839483	0.0175667952681194	0.97165448205558	0.993783614343214
Merged-chr11-79891288-3	chr11	79890822	79891822	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71065.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	5.22265440820302	5.08528971253792	5.19921259111027	4.73264200612178	4.61057549804138	4.96513850794459	-0.888013601942618	0.0214553184639821	0.169234442956775
Merged-chr7-88207612-4	chr7	88207104	88208104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70481.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.55955165624589	6.56140002505817	6.43149862305967	6.61842643014297	6.76644978587221	6.61577566588462	0.239527321989366	0.356215790312999	0.743117973232815
Merged-chr5-111176729-3	chr5	111176207	111177207	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-153990.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	4.95080737509796	5.10310533587065	4.62587229535455	3.87309474745778	3.77263736513375	4.03526224345793	-2.87282249300036	1.18880441074668e-08	1.05456329860778e-06
Merged-chr17-46747426-4	chr17	46746927	46747927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001305988, exon 2 of 5)	exon (NM_001305988, exon 2 of 5)	4787.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	4.82301448530865	4.78736187706139	4.79715964186597	4.7487980578929	4.88685347129784	4.74623394978489	-0.00239262199241931	0.995105126862518	0.998961028701257
Merged-chr14-10430825-4	chr14	10430324	10431324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	22634.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.64175230553596	6.60759031002432	6.44567260176512	6.3975777893866	6.57096967035365	6.55893269026203	-0.0990951437979449	0.708276109993989	0.923674318414978
Merged-chr2-132107205-4	chr2	132106730	132107730	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37878.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	7.3271484653895	7.54071333094255	7.01800854529283	7.45175802571277	7.43024096997113	6.89716578994714	-0.0408174363369539	0.887114620425539	0.973818520404627
Merged-chr10-81320745-4	chr10	81320217	81321217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027381)	promoter-TSS (NM_027381)	-386.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	7.68981460881102	7.23367781290167	7.24772379297562	7.66859055599161	7.56745322785543	7.09877394265496	0.0911805503725668	0.747607169076477	0.936653971666454
Merged-chr14-61683742-6	chr14	61683166	61684166	+	935.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.9841441234701	7.88110927363147	7.88032224058127	8.01064964962392	8.27283456727216	8.0433325596265	0.286234545521565	0.190344208241235	0.576601442268746
Merged-chr4-133804619-4	chr4	133804114	133805114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51003.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.25627664013114	7.17690854061373	7.2833602305532	6.89387885099053	7.49749772347688	7.2374417572852	0.00421380631337636	0.987498778920418	0.997218304929226
Merged-chr11-119084125-3	chr11	119083614	119084614	+	896.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 3 of 4)	intron (NM_007625, intron 3 of 4)	2123.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	4.72307417546823	4.54416839960897	4.75612166893116	4.43369634053339	4.36483647463673	4.17688333274667	-0.843599207361424	0.0560007487588267	0.304695632166641
Merged-chr2-90575822-4	chr2	90575298	90576298	+	835.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4849.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	8.14831856262177	8.4745307184502	8.20083257814973	8.33154820150577	8.58520446978726	8.22350983741591	0.152172835217714	0.512954307515248	0.842234189469162
Merged-chr2-84715333-4	chr2	84714833	84715833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-169.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	7.93667742154672	7.56266481751908	7.69378280029847	7.98630923233455	7.95168890344047	7.65769479085736	0.19562477689518	0.420069873550851	0.789438387352498
Merged-chr15-99094067-3	chr15	99093553	99094553	+	815.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5431.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	2.85058069240842	2.86533417592678	3.00717101178222	2.86276703532776	2.85911947296163	2.90275647916551	-0.155577358919464	0.821847279658971	0.958023303204974
Merged-chr12-98831334-4	chr12	98830827	98831827	+	922.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	60305.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.26514008727576	3.15358627828378	3.07953997031391	3.36753789724478	3.30506762273748	3.49568075097636	0.870869621184156	0.165702496257672	0.540863657924297
Merged-chr2-98662633-4	chr2	98662128	98663128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1194971.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	11.3496461846432	12.8003492906948	11.123788436617	11.990509281643	12.105621455247	11.7516095856162	-0.0683012949144075	0.920640394624353	0.982463724790289
Merged-chr3-146583687-3	chr3	146583179	146584179	+	684.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-13470.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	5.37333976853923	5.59548215747395	5.11787529290843	4.7118402271718	4.57448938498301	4.89229605865223	-1.43304319170712	0.000267628878381391	0.00634987223087453
Merged-chr10-80604831-2	chr10	80604331	80605331	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1949.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	2.93169845758616	2.85433193161956	3.16920087895459	2.91317987719907	2.9069307313393	2.95591031891501	-0.288072619993446	0.676860479609182	0.912576714783976
Merged-chr11-69912747-2	chr11	69912247	69913247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013414, intron 28 of 28)	ID_B1|SINE|B4	-1287.0	NM_001357906	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	2.97170977555586	2.89148470010421	3.58501792156768	3.07215673529768	2.90060133943789	3.20026144580688	-0.513583577194509	0.484318388176512	0.826794432521042
Merged-chr4-148083701-2	chr4	148083201	148084201	+	964.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009642, intron 2 of 4)	intron (NM_009642, intron 2 of 4)	4363.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	3.75700720345002	3.61282452335613	3.93794888092355	3.90240993448561	3.87198750830708	3.86084455413258	0.357138409179231	0.49725745542868	0.833500500620649
Merged-chr16-95955897-4	chr16	95955394	95956394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26817.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.73210004108594	5.42058839402744	5.50951129627111	5.7569072592486	5.69427350176598	5.48272141850373	0.173197225255592	0.602615005838355	0.882397657327329
Merged-chr4-129500921-4	chr4	129500421	129501421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	9731.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	6.60794479599958	6.34734134644518	6.77690827156186	6.75921334496221	6.69915120633859	7.06215900870706	0.410815182956427	0.145463945541001	0.508646998679427
Merged-chr10-78464044-3	chr10	78463558	78464558	+	904.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	890.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.6502616200438	7.03414740144773	6.29338264086616	6.42383861583125	6.4459417074589	5.86413535776224	-0.677866536853258	0.0489553051946972	0.28110365293219
Merged-chr5-74944250-4	chr5	74943754	74944754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.81890838952449	3.80975026627303	4.16912144437585	3.43938617172985	3.33047686692242	3.7903879314644	-1.40876147747231	0.0178638661217231	0.149976447609357
Merged-chr8-83244292-4	chr8	83243776	83244776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 9 of 20)	intron (NM_001111304, intron 9 of 20)	-46072.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	5.00295237004207	4.86830777639485	4.76340896013803	5.22146913084424	5.42297298878057	5.20135421419847	0.845781998810649	0.0230251655723839	0.177379684931666
Merged-chr13-63563922-4	chr13	63563413	63564413	+	843.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	1822.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	3.81953484230407	3.76585242413941	3.50987698141622	3.65335345892732	3.61727718870879	3.63839263299381	-0.262948244825824	0.636149307970584	0.897015562116185
Merged-chr6-146676422-3	chr6	146675923	146676923	+	867.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19205.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	4.75421342371691	4.74943825015835	4.86317329361892	4.34290059527412	4.6954862777914	4.62566170315658	-0.515041244652337	0.221054327256572	0.61561513090473
Merged-chr2-32152539-2	chr2	32152039	32153039	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	1391.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	3.68752957056693	3.44155664398955	3.86374292481183	3.55797123139925	3.11712023915765	3.53646526526038	-0.927884707923318	0.144626450999491	0.50746722336028
Merged-chr2-30587403-4	chr2	30586919	30587919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7625.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	3.20317924127914	3.16976049884372	3.30094639975448	2.8377830613762	2.85601701401643	3.31840451289617	-0.922995349506222	0.193695153594636	0.5810016705228
Merged-chr12-102455879-4	chr12	102455371	102456371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13263.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	8.0770216965286	8.0495190803352	7.79762081065794	7.98302286273478	8.4842029656015	7.84524792436053	0.225931583031672	0.393119546647529	0.771490835516741
Merged-chr1-36076407-2	chr1	36075907	36076907	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	8007.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.13964982282793	5.04575202027854	5.24189295509272	5.01016891620775	4.87684839178705	4.97435513101719	-0.402725111729154	0.274185817203751	0.671685022607599
Merged-chr7-80261213-4	chr7	80260724	80261724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028053)	promoter-TSS (NR_028053)	9.0	NM_031375	83485.0	Mm.21175	NM_031375	ENSMUSG00000047084	Ngrn	AW552001	neugrin, neurite outgrowth associated	protein-coding	6.50688714078557	6.78569380527501	6.93496036953321	6.77754466835648	6.55924848908404	6.99293971769153	0.048587421659241	0.864147766846383	0.968269312109804
Merged-chr15-8706491-3	chr15	8705993	8706993	+	763.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	4314.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.96898644042013	2.82551943997241	3.13745159024544	2.89102551455476	3.20126549812922	3.26329150038796	0.668554232911459	0.338162934087273	0.728064429944456
Merged-chr9-94665421-4	chr9	94664921	94665921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4471.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.95645323116281	5.11452905101121	5.18583566307086	4.75097699140692	5.16083872271668	5.15363447590655	-0.100173303298632	0.79614199192243	0.95140420098761
Merged-chr14-14702823-4	chr14	14702336	14703336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-189.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	5.85452785799188	6.00535650184418	5.79928999671412	6.09258432849508	5.83968042014351	5.86127144357436	0.0722648364088508	0.812944663817151	0.955848682835427
Merged-chr1-172083286-2	chr1	172082742	172083742	+	695.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	-493.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	7.2663716268044	7.40695020054124	6.98950304953967	7.30587481538004	7.29298654153531	6.93080262455684	-0.066717264618827	0.801033454427435	0.95274755793001
Merged-chr2-156434496-4	chr2	156433986	156434986	+	891.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013510, intron 1 of 21)	MTC|LTR|ERVL-MaLR	13577.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	3.24399272527706	3.28454189507052	3.59961918165689	3.52030558625463	3.16186904806611	3.76488812615629	0.440984642634861	0.496835514958697	0.833336003728501
Merged-chr3-95141639-4	chr3	95141138	95142138	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	722.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	6.5290275300817	6.81708037289724	6.74677239047334	6.91438758260236	7.23117695182454	6.9666991475235	0.538963479666247	0.041685155217527	0.255321192148693
Merged-chr5-30153712-2	chr5	30153212	30154212	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 1 of 19)	B1_Mus2|SINE|Alu	1268.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	2.70006800268795	2.40021953050532	2.39593972798797	2.57930838277385	2.39420401704194	2.78888268452265	0.482293349938396	0.56653090629434	1
Merged-chr13-20208279-4	chr13	20207782	20208782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	117775.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.14182777917543	6.43591253256903	6.17847046850247	5.9782892760934	6.31283604914133	5.77863797090374	-0.343652619441645	0.282777433017203	0.6807006950826
Merged-chr7-104300116-3	chr7	104299609	104300609	+	896.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023835, exon 8 of 8)	3' UTR (NM_023835, exon 8 of 8)	-12003.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	2.17619153220679	2.16009211395052	2.28695705021633	2.77965550120385	2.74162489605357	2.94339078192115	6.29385352085937	2.84109081879239e-06	0.000135241124056108
Merged-chr16-31948435-6	chr16	31947904	31948904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026554)	promoter-TSS (NM_026554)	117.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	9.0309193199532	9.20750126791108	8.76989799076785	8.91857867385355	8.99518923959	8.62261174760609	-0.218591477502432	0.345181768823965	0.733666487940844
Merged-chr13-110541884-4	chr13	110541385	110542385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	146841.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.38692822391644	5.35513318593431	4.64466840165613	5.21601985835738	4.91971268593076	4.66863565173537	-0.463866541330198	0.305238190406407	0.701486464326093
Merged-chr6-72538903-4	chr6	72538406	72539406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5485.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	5.96750439729254	6.27795764184776	6.08129180512828	6.11101283546262	6.05235237231553	6.16340485057558	-0.0224958047730281	0.938698592559681	0.986515091506254
Merged-chr9-31018367-4	chr9	31017846	31018846	+	946.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12298.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	3.19013822265115	3.13333994357714	3.17934625468921	2.9860251095632	3.11173519191809	3.01520113131689	-0.555046265517282	0.396371277022169	0.773646867486102
Merged-chr1-148764898-3	chr1	148764404	148765404	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	1157535.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.94105320608848	2.86416544376854	2.79402350662665	2.84618099812435	3.064784850386	3.05044186646392	0.577498233722513	0.409416828467289	0.782747931232623
Merged-chr9-90255989-3	chr9	90255525	90256525	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	14744.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.61218371073842	5.62507698838963	5.46635609598362	6.00931067715103	5.43693705294381	5.646094048804	0.263939609011005	0.449173449087394	0.807594795348397
Merged-chr9-63975511-3	chr9	63975001	63976001	+	997.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	46558.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.53354384251321	5.20249131253065	4.94539186548924	4.85141012453683	4.7878026684829	4.59085032525684	-1.08397983436485	0.00835164440081101	0.0887191930047982
Merged-chr16-36934356-4	chr16	36933887	36934887	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-596.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	7.29186613692271	7.41298591760159	7.26476494802245	7.41213891722886	7.59577114428845	7.21353878437248	0.145418270867798	0.549191110993964	0.860229169902974
Merged-chr3-51209978-4	chr3	51209487	51210487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-14460.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	7.29821731700447	7.2617073641262	7.17957945947183	6.79519172416961	6.64874525047282	6.96971709169073	-0.684774410452057	0.00568251059133542	0.0670111027896595
Merged-chr3-122275231-2	chr3	122274731	122275731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153806, exon 2 of 7)	exon (NM_153806, exon 2 of 7)	817.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	5.34531348452885	5.34709575307574	5.39683981264157	5.60678308870055	5.36742882033106	5.23625535520881	0.109718782748705	0.749934043862537	0.937463855381525
Merged-chr12-31917517-4	chr12	31917028	31918028	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 19 of 22)	intron (NM_001163126, intron 19 of 22)	32717.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.49303745054007	3.74898126942668	3.6943416715337	4.16051553552017	3.72880225827785	4.23870582368667	1.27386782409652	0.0239090680641321	0.181765713611723
Merged-chr17-17590633-3	chr17	17590129	17591129	+	639.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	33860.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.71984288878947	4.9068392557901	4.86598887801913	5.28144048166169	4.84760250912433	4.85550035814709	0.394289868556373	0.327694843387735	0.719859351829734
Merged-chr16-58481922-4	chr16	58481388	58482388	+	837.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	41538.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.8033657702698	6.78345900172941	7.30850291123323	6.85934794256815	6.74630553761769	7.28201133055893	-0.00736854258378997	0.980499498578738	0.995512982807197
Merged-chr2-120348324-4	chr2	120347806	120348806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147153, intron 2 of 25)	intron (NM_147153, intron 2 of 25)	4827.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	6.52759919193815	6.72948215886275	6.45838010501251	6.52969168331851	6.70811898965118	6.18899271898764	-0.119374957686796	0.683084927746888	0.91523316791368
Merged-chr7-97809525-4	chr7	97809030	97810030	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	MIRb|SINE|MIR	20989.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.30977434703919	4.28827791837414	4.19481012876729	4.34200665350714	4.76840301938044	4.49170421494427	0.73309916074332	0.108018036749696	0.438994080388235
Merged-chr15-76381020-4	chr15	76380586	76381586	+	860.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 1 of 43)	CpG	573.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	7.25899094078431	7.87594703395047	6.90034325423119	6.99481149471449	6.89809732104706	6.52552931289991	-0.890339114142844	0.00769467071208661	0.0836683555444424
Merged-chr9-96196951-3	chr9	96196470	96197470	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178667, intron 1 of 13)	intron (NM_178667, intron 1 of 13)	695.0	NM_001184708	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	4.589571026881	4.82975105492921	4.80701235602602	4.62835591278537	4.3158799807689	4.64467980789768	-0.519948020226132	0.225283409458132	0.620112538760536
Merged-chr7-110382497-4	chr7	110381994	110382994	+	854.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	RMER10B|LTR|ERVL	160791.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.95252953058835	4.95232801151538	5.2603941945131	5.47709059959912	5.42417795895675	5.0537287826992	0.590999620437247	0.11569462791208	0.45406908161447
Merged-chr1-171281793-4	chr1	171281295	171282295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-609.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	6.88509209901422	7.14730581114355	6.78075378325704	6.75641183280291	7.02132177519655	6.89949462465276	-0.0832192679563531	0.752352256102702	0.938190907978803
Merged-chr15-102377155-7	chr15	102376637	102377637	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10169.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	3.57771319924377	3.27196227542711	3.89717069703903	3.11310113031053	3.28180719039114	3.32137941323598	-1.36937516496955	0.0377199612945185	0.240137273590206
Merged-chr10-80322213-2	chr10	80321713	80322713	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008793, intron 13 of 14)	intron (NM_008793, intron 13 of 14)	-1665.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	3.20940667699687	3.04016221890193	3.31442386181911	3.34637367439611	3.20704985966839	3.09506673921711	0.145227922976498	0.822106014878445	0.958041123079214
Merged-chr13-111807661-1	chr13	111807161	111808161	+	1000.0	f1_balb.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1332.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	8.1265639488678	8.28674883727027	8.02884943205729	8.12659469195138	8.44942169129059	7.86213155224879	0.0326436333388148	0.896002270032337	0.97569173539301
Merged-chr10-60253781-2	chr10	60253281	60254281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-23847.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.47513679059961	4.60197501574328	4.49581374479482	4.71921611451904	4.54531599707904	4.60502037804128	0.231709047986143	0.57878476298101	0.872437129840066
Merged-chr19-23132895-2	chr19	23132395	23133395	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8331.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.40934480387744	2.47774876375531	2.63415034990262	2.46036940681915	2.45947413984106	2.64653191145707	0.0880308807484831	0.911459762743411	1
Merged-chr12-8496883-17	chr12	8496406	8497406	+	933.397034	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007483)	TTS (NM_007483)	3103.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	5.11443133914962	5.12775193929954	4.91731602549478	5.52267140279638	5.27739813990241	5.69295542199023	0.865970334829827	0.0183850645185009	0.152941212821122
Merged-chr17-34101858-4	chr17	34101319	34102319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6510.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	5.33749859424808	5.24365054389481	5.35516133367767	6.89752156043182	7.03163535351729	6.48838358304469	2.63168118664792	6.86395662692987e-17	2.73270862685924e-14
Merged-chr7-100434382-4	chr7	100433859	100434859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38632.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	7.0402664499556	6.67506766337416	6.84293537585495	6.84412896804028	7.21671731568375	6.90138347552452	0.220700566800749	0.41841988262527	0.788591657834186
Merged-chr19-36554082-3	chr19	36553593	36554593	+	795.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-546.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	3.31843246556189	3.3697991569189	3.29559254850244	3.48849573647396	3.34248529818641	3.53243488994132	0.470604101362737	0.428621035171982	0.795420465213011
Merged-chr8-117256579-4	chr8	117256050	117257050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163262)	promoter-TSS (NM_001163262)	-469.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.17812820740789	7.43758799574304	7.71751524523353	8.01399482944398	7.57391998793555	7.65560712758202	-0.0804380996139642	0.78148439731761	0.946228281486063
Merged-chr1-120504859-4	chr1	120504369	120505369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010766, exon 1 of 17)	5' UTR (NM_010766, exon 1 of 17)	155.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.79407214940499	3.55686649111732	3.80987644843172	4.15878112535388	3.90047593962788	4.33449895522047	1.27326653189872	0.0177465169808365	0.149217076085433
Merged-chr7-6156183-4	chr7	6155674	6156674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013012)	promoter-TSS (NM_001013012)	-203.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	8.07218709817326	8.19224200770343	8.11709134140134	8.28475147596315	8.23652250119319	7.92760094149359	0.0513103560727577	0.817360088338456	0.956767881392089
Merged-chr10-42679460-2	chr10	42678960	42679960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	544.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	7.6487904024139	8.05623744145696	7.42480262543541	7.72620411723307	7.6197545948335	7.34520600901455	-0.242015971242226	0.375119266447136	0.758460474875058
Merged-chr12-85490581-4	chr12	85490090	85491090	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16700.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.04271062854756	7.0324099596521	7.36933928170584	7.07611747991864	7.13278215849908	7.353624387784	0.0576538975345562	0.820849369156898	0.957870709971344
Merged-chr3-151746205-2	chr3	151745698	151746698	+	892.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_133871, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	3761.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	3.2298663968878	3.29302279048301	3.20552801423861	3.63711424324944	3.1720760177541	3.61121949428241	0.927850285265689	0.147321673896121	0.512222450828807
Merged-chr14-29968321-4	chr14	29967838	29968838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-42.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	8.66475471989792	8.77296634656907	8.54690276900934	8.59386254146716	8.79189266003669	8.33759698995117	-0.100568348067724	0.656903165773724	0.904720876497753
Merged-chr15-61984480-4	chr15	61983988	61984988	+	929.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-853.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	6.74619764700878	6.34602137549109	6.32736423175729	6.49623236700418	6.27484187655065	6.42600714572667	-0.156882628238249	0.590116524865647	0.877100187719802
Merged-chr15-59653899-3	chr15	59653362	59654362	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	5208.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.26560674076014	4.8020527715544	4.60196685432578	5.07739421981515	4.61837653309015	4.95267537386279	-0.0824857690387077	0.853353226756751	0.965672676480491
Merged-chr17-80800589-2	chr17	80800089	80801089	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-72564.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	2.49499842223268	2.52062003382391	2.38695248444435	2.61050722622558	2.44491085113732	2.71491757374534	0.702879485438106	0.381975679293254	1
Merged-chr6-97853659-3	chr6	97853146	97854146	+	835.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	46588.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.27222357837135	4.08259696288324	4.33506659027474	4.1268633761984	4.32436927688708	4.44315524264275	0.195247447392502	0.676221125353569	0.912421384593547
Merged-chr9-63794293-1	chr9	63793793	63794793	+	676.0	f0_balb.idr	Intergenic	Intergenic	-36299.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.27181481748072	2.87149588696403	3.13181406276071	2.88475663748716	2.99463941069198	2.70174768303685	-1.07912110762989	0.156156275821882	0.526455629779472
Merged-chr12-86726441-4	chr12	86725939	86726939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	21.0	NM_144524	68737.0	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	3.46340271852507	3.56840614743038	3.52714778904413	3.61856028166346	3.48496223852412	3.18202342425137	-0.268125461267445	0.663058919755256	0.906983504767308
Merged-chr1-93757779-1	chr1	93757279	93758279	+	576.0	f0_balb.idr	intron (NM_174874, intron 1 of 12)	Lx9|LINE|L1	2746.0	NM_174874	66615.0	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	3.35095378716021	3.56256087503518	3.49749954579816	3.48482018341917	3.3741537301831	3.34458083942331	-0.265434994522547	0.653259725721334	0.903272317993414
Merged-chr3-96261778-2	chr3	96261330	96262330	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1487.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	5.74271629452314	5.49487201145902	5.50654798346423	5.82097648032707	6.11082385417115	5.96456767806847	0.69175670194388	0.030171032777033	0.209663404490889
Merged-chr2-117996340-4	chr2	117995831	117996831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114871.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.64304946959703	6.83718844730884	6.60323064552803	5.96591992801745	5.88923759076093	6.13320200498209	-1.17854442174711	2.4085885648876e-05	0.000856103533990462
Merged-chr4-53099379-2	chr4	53098879	53099879	+	775.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	RSINE1|SINE|B4	60516.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.76873239742089	2.91221077809116	3.16345535819498	2.9829235291331	2.5507268766122	2.89244969599956	-0.651820149339001	0.400771368782623	0.776994031647378
Merged-chr2-119156553-1	chr2	119156053	119157053	+	540.0	f0_balb.idr	intron (NM_001033136, intron 1 of 12)	CpG	481.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	7.49512003068098	7.5065428853609	7.1575993586165	7.43702910362582	7.7449957145415	7.31393701890821	0.17112155053158	0.508874379614388	0.840094031565294
Merged-chr16-4723587-6	chr16	4723091	4724091	+	818.277771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	6.56116031008197	6.26549017933423	6.99722468672657	6.70240420129257	6.77703047886087	6.6420130039488	0.123999409974903	0.683644843930238	0.915479407206029
Merged-chr6-28482999-2	chr6	28482499	28483499	+	632.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2651.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	4.27276787836186	3.94200195393658	3.68461176283808	4.4070312725996	4.02747938157827	4.0878815351937	0.53157952156129	0.334330961596248	0.724883973366998
Merged-chr17-69196885-2	chr17	69196385	69197385	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	RLTR34D_MM|LTR|ERVK	37529.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.23835065398883	3.38532458239226	3.53377944650204	3.67587782238752	3.26325244805918	3.38568987974313	0.248262176549699	0.689001075703927	0.917235946766438
Merged-chr17-32350671-4	chr17	32350169	32351169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017476)	promoter-TSS (NM_017476)	-92.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	6.8802425232061	6.97269164922419	6.87669524466817	7.0247657733973	7.16426805970936	6.9058074359026	0.200296705125623	0.415987875708815	0.786885495180028
Merged-chr2-30407396-4	chr2	30406893	30407893	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 6 of 13)	intron (NM_007760, intron 6 of 13)	8355.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	4.51943085071858	4.34396626330884	4.96161089078664	4.83725669767508	5.00072468573094	4.9922538067787	0.747068900572884	0.0842279492162483	0.38399290160706
Merged-chr18-75696998-4	chr18	75696531	75697531	+	962.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	CpG	665.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	5.35589636732143	4.8714028455448	5.16466562041656	5.19448157495636	5.30510114385165	5.22885093404716	0.204232478210917	0.586959290689556	0.875765827350749
Merged-chr14-7987103-4	chr14	7986604	7987604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007870, intron 2 of 7)	intron (NM_007870, intron 2 of 7)	7078.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	5.44704891852464	5.70920450184952	5.71481938854693	5.61763545588236	6.14050892862356	5.77688506221625	0.450806390698167	0.187036050025442	0.571933984437064
Merged-chr9-54560241-4	chr9	54559721	54560721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019686)	promoter-TSS (NM_019686)	-142.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	5.04440305627002	4.89501675652589	5.06007168612632	4.74181000237163	4.41861250598148	4.84707602479666	-0.752023892812781	0.0665285323568575	0.336926726740681
Merged-chr8-13158467-2	chr8	13157967	13158967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	-694.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	5.89543080533566	6.02050118090884	5.74588439883244	5.99751573127991	6.02687184796015	5.75403737565158	0.0712193736219826	0.817242763493773	0.956754861188725
Merged-chr13-22041005-1	chr13	22040505	22041505	+	1000.0	f0_balb.idr	TTS (NM_175656)	TTS (NM_175656)	357.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	6.43573422023817	6.55827280773186	6.8833682185424	6.74133647369526	7.0269100306961	6.94154116307876	0.440415267550792	0.110058241157445	0.443363350300229
Merged-chr10-4096492-3	chr10	4096009	4097009	+	703.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 24 of 27)	ID4|SINE|ID	116611.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	3.06410939774725	3.29299658002908	3.54940635025343	3.03766708615042	2.8680054512313	3.25904800264313	-1.08727910298945	0.119536565455281	0.462171764249014
Merged-chr15-100677947-4	chr15	100677424	100678424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-8424.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	6.55258172293071	6.2820957389027	6.72466590026555	6.50811377952497	6.85758521326506	6.75300859190989	0.307702107705508	0.281162606196703	0.679316418491107
Merged-chr6-134543310-2	chr6	134542810	134543810	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	23603.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.30526075547191	4.48208401105875	4.54332379292273	5.09243136424744	5.25251642685194	5.10392448807413	1.63788530963923	4.42220339145278e-05	0.00142478910928596
Merged-chr7-100429328-3	chr7	100428847	100429847	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 20 of 32)	MER90|LTR|ERV1	-43644.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.17742544864015	5.86854313108473	6.22919091994571	6.04063374609142	6.18887798822497	5.93892663120117	-0.0447020622588474	0.883272620473738	0.973347392063704
Merged-chr19-55544604-4	chr19	55544114	55545114	+	936.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	L1MB8|LINE|L1	157590.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.51410880159521	4.11926213163853	4.26273480924564	4.33204595469779	4.21025735469345	4.28533675828074	-0.100183913429819	0.830773523388814	0.960370002015736
Merged-chr11-107189348-4	chr11	107188840	107189840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161329)	promoter-TSS (NM_001161329)	41.0	NM_133702	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	6.01395147612756	6.13290966986474	6.11884323070005	6.27492072927473	6.08408048552659	5.67703504766937	-0.0712056029299011	0.822379841531328	0.958041123079214
Merged-chr4-105561003-4	chr4	105560500	105561500	+	910.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	403653.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.99176170111203	4.90381599382108	4.85865018613723	5.07623309752543	5.10488736057498	4.84675979557614	0.21800915184074	0.564965527532946	0.866552670637515
Merged-chr2-131206876-4	chr2	131206285	131207285	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3575.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	3.07667791194743	2.96719549011514	3.17256229001572	3.01264670377058	2.9090041954559	3.01373278879611	-0.435687863893052	0.515125174768919	0.84337265078831
Merged-chr1-88279392-5	chr1	88278795	88279795	+	752.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1716.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.95128154681864	3.97688749198488	4.20320709227993	4.0749611994673	3.96804624390421	4.62050277145819	0.556850981383574	0.288735437756092	0.686124851873233
Merged-chr9-110711576-4	chr9	110711073	110712073	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028312)	TTS (NM_028312)	31037.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	5.52055003081706	5.15168469962634	5.22320028098632	5.63891769035049	5.90650574601415	5.45219252695846	0.717727484172941	0.0456076741918924	0.269702262107802
Merged-chr19-6872421-2	chr19	6871921	6872921	+	848.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14210.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	7.31133023789423	7.20478784155632	7.57688717314812	7.74337093989707	8.0425690995297	7.77591285848141	0.725789027907474	0.00295123577086311	0.041607323961704
Merged-chr11-23667433-2	chr11	23666933	23667933	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 2 of 17)	intron (NM_001033654, intron 2 of 17)	1457.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.35659504877116	5.28868960367544	4.79885335028	5.32820949088929	5.07017312660472	4.98860450812985	-0.0907646697027025	0.819951928009656	0.957376438106023
Merged-chr13-44181278-2	chr13	44180778	44181778	+	704.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35209.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	2.88790938092367	3.26882677944426	2.91261519292141	3.16662038195054	3.06365714268937	3.10876098193062	0.313427190988937	0.653381406053629	0.903354103898283
Merged-chr16-95831741-4	chr16	95831225	95832225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66988.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.01802106400743	4.31266566064931	4.69839065415311	4.47323577327414	4.20994770328477	4.39069951592833	-0.867332445458847	0.0701086072845972	0.346721961066078
Merged-chr13-115090201-4	chr13	115089694	115090694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-36.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	7.88996147278492	7.96915545394436	7.05455749411724	7.79067439199547	7.7763463145588	7.22407886167838	-0.115913210219042	0.722482811274242	0.928821151735982
Merged-chr14-121872705-2	chr14	121872205	121873205	+	843.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5565.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	4.30731942636546	4.52681598616867	3.8309577820619	3.89220539452925	4.30855029694943	4.26317025563172	-0.247247339788769	0.652062541385238	0.902896807825606
Merged-chr17-57340904-2	chr17	57340404	57341404	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17782.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.35998731193125	5.04892215167766	5.54971454185408	5.36240515897964	5.34539927118815	5.47505706656081	0.132194214679926	0.713650305389582	0.92557476402444
Merged-chr1-171474443-3	chr1	171473915	171474915	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-29063.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	3.03876357462302	3.18434289958787	3.18595789537412	2.83406442491911	2.69662508997775	2.90775233084903	-1.64584402952308	0.0221848628533177	0.172905308244481
Merged-chr1-165589360-4	chr1	165588871	165589871	+	829.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45170.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.07231840084953	4.22104702605704	4.00141292769099	3.7842078457119	3.5144727105147	3.87247888373833	-1.21478198957027	0.0232322228029703	0.178347337853082
Merged-chr15-95791743-4	chr15	95791281	95792281	+	966.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	938.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	8.15152008648539	8.38639717022423	7.72129950334417	8.4442189363076	8.64514834789089	8.00305449392952	0.384722908929425	0.175347838261758	0.555188086989512
Merged-chr16-84991526-3	chr16	84991062	84992062	+	790.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	19351.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	4.17689400348519	4.32825478407282	4.14084098380613	4.06116903205668	3.83415627371888	4.11537362129296	-0.640111517041237	0.190822703585059	0.577422922390924
Merged-chr6-125501414-3	chr6	125500941	125501941	+	958.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.07625713100132	3.62847930117719	3.98431055248685	3.80742859934251	4.03060105160972	3.80261350173668	-0.0556552991150511	0.918771458769736	0.981830247255695
Merged-chr5-32139693-5	chr5	32139216	32140216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3244.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.2744637133503	7.2703965945751	7.23460881562544	7.4955225979833	7.5229301496237	7.68666737997859	0.450488614224439	0.0469963075479879	0.274476644799114
Merged-chr5-54024964-3	chr5	54024516	54025516	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	26493.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.38351266717572	3.83573390059518	3.60104738133767	3.58342306779607	3.50947905665848	3.50749288814756	-0.317231271512443	0.589983593324712	0.877060163469295
Merged-chr4-149773688-3	chr4	149773202	149774202	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	CpG	565.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	8.06914002255369	8.04135431239383	7.68116038646014	7.95870959840856	8.02936391571395	7.78300865020308	-0.0246291507362731	0.916816195470485	0.981431795618389
Merged-chr8-88293989-7	chr8	88293451	88294451	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037724)	promoter-TSS (NM_001037724)	-253.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.47198856858901	5.48382571662179	5.21120391647744	5.59344205600644	5.43036255954927	5.55622735969985	0.228114596077397	0.499753460953518	0.834715972162707
Merged-chr12-16896282-4	chr12	16895778	16896778	+	758.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	1300.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.12827438769517	6.23077495008777	5.99132969928226	6.13030916779075	6.04685160022133	5.82694409472917	-0.191876801244054	0.518952877281186	0.845542912781001
Merged-chr19-10555785-4	chr19	10555297	10556297	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277861)	promoter-TSS (NM_001277861)	-34.0	NM_001277860	68642.0	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	3.75768297207454	4.09317153075169	4.07686533552217	3.8869148460734	3.75717527854336	4.14432492657751	-0.160179668436051	0.762428995362877	0.941561416958418
Merged-chr16-94615749-2	chr16	94615249	94616249	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	RLTR11B|LTR|ERVK	4330.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.21178833302464	4.92367984971649	4.80283318804723	5.07594064254058	5.09297650139965	4.9094449736209	0.0729960040907319	0.851003453688329	0.965046614984647
Merged-chr7-27551904-1	chr7	27551404	27552404	+	542.0	f1_c57bl6.idr	intron (NM_001317355, intron 1 of 13)	ID_B1|SINE|B4	1314.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	3.57483004042401	3.3514701408241	4.07903111152866	3.8708053114983	3.79708635391539	4.26907436350483	0.910201284545179	0.139450535494329	0.499084106249493
Merged-chr9-64143392-4	chr9	64142923	64143923	+	814.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026507, intron 17 of 18)	MTE2a|LTR|ERVL-MaLR	26276.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	4.543799396203	4.65689097730416	4.93398368211668	4.60167125485139	4.70168579443823	4.96393308932192	0.106468389932656	0.800875085930184	0.95270876613224
Merged-chr10-81359548-2	chr10	81359048	81360048	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	2057.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	4.90950924811253	5.08109040716776	4.53709206579288	4.83814637109433	4.9453987654976	4.36203601041971	-0.269342361628686	0.560158664793761	0.86517480267848
Merged-chr16-91736514-2	chr16	91736014	91737014	+	785.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7143.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	6.57084658156623	6.87706363926602	6.56375794151751	6.27834324520977	6.58721279238756	6.280652346025	-0.454386693770047	0.112878420302016	0.44877383518038
Merged-chr10-120228686-2	chr10	120228166	120229166	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025431, intron 2 of 2)	intron (NM_025431, intron 2 of 2)	1606.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	2.87330376196078	2.89554235304252	2.86045856748828	3.04018769423208	3.1461605209638	3.22465411923235	1.23353216174956	0.0700285252408137	0.346470063517519
Merged-chr6-87809320-4	chr6	87808819	87809819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	438.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	7.53299467107667	7.44622511025992	7.18608004686037	7.32922700492648	7.61085437655915	7.38462238608999	0.0717997889214148	0.770967783115948	0.94354509255191
Merged-chr2-160207559-2	chr2	160207059	160208059	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119935.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.3776220706382	3.59029159501874	3.23784286219864	3.50403583715617	3.70403847308181	3.99415334805235	1.14558113278494	0.0668481358633435	0.337969357693346
Merged-chr2-164835571-5	chr2	164835079	164836079	+	917.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 6 of 14)	intron (NM_001038492, intron 6 of 14)	1806.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	5.81155208945702	5.8106945245063	5.93263802729848	6.08060315198491	5.97657525618931	5.68660017169629	0.152930212239157	0.621611739623777	0.890824801601999
Merged-chr5-3493275-4	chr5	3492784	3493784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-50549.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.23048369312858	6.2653152968244	6.15594511273167	5.78978069773088	5.88445650754613	5.92377768976453	-0.613670552519254	0.0328359453734612	0.220798715074224
Merged-chr1-170365890-4	chr1	170365434	170366434	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	MTD|LTR|ERVL-MaLR	57073.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	5.57480257837302	5.86132533346709	5.9414909728284	5.93952336268685	5.93140000131449	5.58765824119865	0.0780132617461594	0.811750838680092	0.955306974300267
Merged-chr10-20772879-2	chr10	20772386	20773386	+	781.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47808.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.87141569791918	7.78800027134734	7.2659867343547	7.91347522351731	8.37961315776557	7.52226545670711	0.457785225377334	0.140823383393207	0.501417779339381
Merged-chr4-141993769-3	chr4	141993248	141994248	+	998.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10756.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	3.72952118330346	3.25518328597112	4.10390238144036	3.62419814719819	3.22788397106872	3.82096153797886	-0.526793128850107	0.437950430858814	0.800355350220733
Merged-chr11-97150124-4	chr11	97149638	97150638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-426.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	6.91595091777951	6.78578596189187	7.00834910774513	6.9381944749619	7.14046415766174	6.53336839638122	0.00981366115261833	0.972254750344421	0.993868590220018
Merged-chr5-137599880-2	chr5	137599365	137600365	+	884.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254762, intron 2 of 4)	intron (NM_001254762, intron 2 of 4)	843.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	4.58766668234014	4.77674718536312	5.05677897200073	4.73718904522623	4.77830095300217	4.7336682927904	-0.133700686406749	0.745304859069342	0.936116619770028
Merged-chr1-39493286-4	chr1	39492786	39493786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14531.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	6.42861957346348	5.49306251131124	6.1156066939796	6.34920552300912	5.85282212998076	6.29691280453119	0.183031468448939	0.631680354662846	0.89524721007624
Merged-chr15-43383190-3	chr15	43382694	43383694	+	664.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93842.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	3.50997531042962	3.19152005987352	3.43770950443788	3.33976075939534	3.10218128892477	3.16632948315051	-0.72880593016171	0.255030017490311	0.652024436103169
Merged-chr11-111066071-4	chr11	111065589	111066589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-75.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.42218132556678	6.43822372825679	6.63802948954064	6.74858062256977	6.90058040348017	6.63092316760364	0.44227298525824	0.0949329459508779	0.410816547050169
Merged-chr4-149710711-4	chr4	149710206	149711206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9077.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.86327368377169	4.28710518871961	4.76781350967656	4.82221803582592	4.96416885613113	4.79554996152063	0.470991674475156	0.28253242236025	0.680451612659422
Merged-chr13-73803538-4	chr13	73803034	73804034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	39837.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	7.17355204367608	7.35404831045314	7.44171087545091	7.0238814305452	7.45392778291676	6.95911572208819	-0.219459353247645	0.414980221907406	0.786115461363139
Merged-chr16-4213316-4	chr16	4212759	4213759	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001025432, exon 1 of 31)	5' UTR (NM_001025432, exon 1 of 31)	145.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	6.2715821677193	5.74302657730892	5.7828936004669	6.51416717013427	5.88483514813237	6.06840735418647	0.377704546570386	0.288548514099382	0.685976066839707
Merged-chr11-26585571-1	chr11	26585071	26586071	+	575.333313	f0_balb.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	8349.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.92331147016934	7.08606824390602	6.62666303926119	6.42826383715344	6.62713196518064	6.41002910902942	-0.633202774566612	0.0226854711169888	0.17555921509509
Merged-chr6-120917461-4	chr6	120916944	120917944	+	901.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-620.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	6.30626812957376	6.38263484719295	6.04241166909795	6.36703165489497	6.66293712336623	5.90018409970339	0.172818259399994	0.603221613811758	0.882544198306255
Merged-chr8-33656165-4	chr8	33655718	33656718	+	871.333374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	B3|SINE|B2	2980.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	3.86133211847688	3.73028246053029	4.14151446957287	5.00201764272894	4.93160423053506	4.81365852783838	2.76146229184646	1.14452696722904e-08	1.02291944027061e-06
Merged-chr1-160234052-4	chr1	160233551	160234551	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038621, intron 6 of 8)	intron (NM_001038621, intron 6 of 8)	-21159.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	5.61920334770209	5.92714093930939	5.56256825839132	4.45149664899498	4.34532356434898	5.11572987703008	-2.22523854235002	3.85021581162066e-07	2.33845808214111e-05
Merged-chr4-119806736-2	chr4	119806238	119807238	+	699.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7940.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.71338774557425	2.84091926339755	2.95753605907767	2.95578249309372	2.83848709378703	3.08679749001143	0.596589565219133	0.398780785730134	0.775423220616012
Merged-chr16-58685732-4	chr16	58685177	58686177	+	843.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15469.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	4.10026720458709	4.21099392926033	4.41614565294924	4.21880997512834	4.14346734511676	4.13194477415565	-0.207308606997162	0.659669417013719	0.905586631697299
Merged-chr10-81182871-4	chr10	81182354	81183354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-153.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	6.69394439819068	6.80869347919979	6.78077526019076	6.69363922918723	6.88718285525175	6.91154671792203	0.112760663346066	0.654824716754861	0.903959451132495
Merged-chr5-97962037-3	chr5	97961539	97962539	+	981.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133738, intron 11 of 16)	intron (NM_133738, intron 11 of 16)	68923.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	3.26241658797145	3.39670341336127	3.00096919460947	2.65400488824509	2.57211934361107	2.81935376813413	-3.26921348033639	0.000190326702236379	0.00480628353252948
Merged-chr11-3174025-9	chr11	3173491	3174491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	19472.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	9.70887128394898	10.4291461731347	10.3978223193255	8.22800366495428	8.07275263249139	9.88429192012326	-1.56835399168852	0.0585772870819321	0.312983940378438
Merged-chr12-52603284-7	chr12	52602793	52603793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-971.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	8.24391028139601	8.40732799591838	7.73307411102002	8.26601613676403	8.44517009325009	7.94676428367342	0.104165162123218	0.704283393860732	0.9223772679418
Merged-chr5-100498603-4	chr5	100498096	100499096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115010)	promoter-TSS (NM_001115010)	-23.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	7.10098440771488	7.31884665606931	6.93786388600705	7.23705552681826	7.2337472356212	6.98172903721728	0.0384336489909835	0.88064159207526	0.972570649423004
Merged-chr16-91479246-2	chr16	91478746	91479746	+	737.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5969.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	4.28230379572382	4.15539674986427	4.64460013110618	4.36167273894798	4.40637161562318	4.74505086383568	0.360295075146272	0.444778062990975	0.80451094486883
Merged-chr5-144257273-2	chr5	144256773	144257773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	2048.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	6.69955903749706	6.35733368777036	6.80943559475912	6.53977578409649	6.46237000263083	6.78132371535525	-0.0564629029211926	0.843773616565778	0.963645026675097
Merged-chr12-11265966-4	chr12	11265482	11266482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177331)	promoter-TSS (NM_177331)	96.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	7.10120406463668	7.02276775794064	7.27440382755301	7.24087336153601	7.17217997840655	7.19299798852594	0.107497168074921	0.651192249438516	0.90274227832685
Merged-chr10-87688025-4	chr10	87687530	87688530	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	166235.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	3.03064390091739	2.67910814721596	2.69639907152812	2.94966649277957	2.97607973955271	3.02280466373251	0.79629919438783	0.283263805037327	0.681208517038899
Merged-chr1-143622118-2	chr1	143621618	143622618	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145991, intron 13 of 16)	intron (NM_145991, intron 13 of 16)	-18579.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	2.99426600704597	2.9415600026173	2.97277678940753	2.92809625744778	2.74811755029534	2.92531000276937	-0.511371004832087	0.461474778586858	0.814992635038861
Merged-chr19-55800764-3	chr19	55800260	55801260	+	694.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	58950.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.41091717994765	3.63621977929061	3.84199394760192	3.46396076588768	3.44033487422477	3.61790943942094	-0.460760710998516	0.431075587196302	0.796644918588116
Merged-chr6-39003159-2	chr6	39002659	39003659	+	725.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	intron (NM_011539, intron 5 of 12)	64427.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	6.93785670992048	6.91460306621648	6.50490769424594	6.85341714339415	7.15124916602661	6.85228471043673	0.239680559945034	0.387338156063397	0.767583116195701
Merged-chr7-16892209-4	chr7	16891723	16892723	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010320, exon 1 of 4)	5' UTR (NM_010320, exon 1 of 4)	437.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	2.81311340081245	2.73487848224087	2.99333875257293	2.79048847986978	2.52846634651781	2.9513465164582	-0.43333568396841	0.570612971847658	0.869253690275099
Merged-chr16-8667477-4	chr16	8666970	8667970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	4683.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	6.71038767302346	6.77677503096487	6.88587135419657	7.020263789692	7.13649187758695	6.53562972890238	0.226514667191931	0.421629025505601	0.790511670893872
Merged-chr11-62221652-2	chr11	62221152	62222152	+	681.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27332.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	3.42308066343429	3.0726400444789	3.4780404510339	3.52453709054129	3.16056223852523	3.38655169266716	0.11666032858426	0.857441056214944	0.966747388099837
Merged-chr14-52100506-5	chr14	52099824	52100824	+	757.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	MER5A|DNA|hAT-Charlie	3697.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	5.57351742743773	5.43349349947916	5.5098157948611	5.62668378683386	5.67010639606782	5.78467698923545	0.346645829383406	0.276964133301826	0.674302355495752
Merged-chr3-88740064-4	chr3	88739561	88740561	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	23207.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	2.58094813233331	2.53979299371606	2.40798828058156	2.54066334245434	2.56921803952765	2.67612896248878	0.458266462223681	0.560241416570425	1
Merged-chr7-30167241-3	chr7	30166726	30167726	+	847.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011980, intron 1 of 1)	intron (NM_011980, intron 1 of 1)	2515.0	NM_011980	26465.0	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding	3.33637884929552	3.3347111352219	3.69148488720068	4.57154994777738	4.63630516294084	4.57000728795746	4.05097456509803	3.57691820698326e-10	4.22767343986737e-08
Merged-chr7-17022512-2	chr7	17022012	17023012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011155, exon 2 of 13)	exon (NM_011155, exon 2 of 13)	5402.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	3.50627402452966	3.36052847710452	3.63843572649524	3.88648357934721	3.56263865901989	3.76011234790191	0.835609082222863	0.144797310710281	0.507645438049158
Merged-chr10-69213662-4	chr10	69213133	69214133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	439.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	7.24916706284903	6.91474710320959	6.85641260672593	7.25127996569642	6.89449471301509	7.04232071932568	0.067298257789983	0.80268158235987	0.953313831733603
Merged-chr8-19703429-3	chr8	19702975	19703975	+	961.238098	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-26101.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	3.32288956269032	3.50918545633453	3.32684384155962	3.13106589330119	3.29559279278537	3.55838184944093	-0.223493850682702	0.722529019208337	0.928821151735982
Merged-chr14-120277915-1	chr14	120277415	120278415	+	700.0	f0_balb.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2246.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.47187943536329	8.57134452150865	7.87186687193915	8.29851046557611	8.59424864806272	8.1468791700445	0.0235612094895798	0.931575684773308	0.984929477721491
Merged-chr15-67905468-4	chr15	67904963	67905963	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	353393.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.47094289735308	3.61729309057362	3.68111296646553	3.75040047695251	3.53499310692252	3.59301025971408	0.135901455761798	0.808501544565507	0.954683711776353
Merged-chr2-14073981-4	chr2	14073445	14074445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	-11.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	7.68800035438434	8.01194643663115	7.64614408178995	7.94513520539862	7.94563672302412	7.51240553807261	0.0379162540219265	0.881774287066156	0.97289513266204
Merged-chr5-117389078-4	chr5	117388576	117389576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028128)	promoter-TSS (NM_028128)	-53.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	5.92192608025687	5.87794073686137	5.66831676197654	5.80278725884911	5.54950422013681	6.00091424410321	-0.0899810642463149	0.782827130221667	0.946764786373054
Merged-chr5-62893207-4	chr5	62892700	62893700	+	725.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79377.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	2.83882271241854	2.9525605116668	3.23642101382108	3.1338773239904	2.68680374976575	2.9675578059744	-0.342552704703562	0.644147745097879	0.900067122451665
Merged-chr9-99141488-1	chr9	99140988	99141988	+	901.0	f1_c57bl6.idr	Intergenic	Intergenic	-1277.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	2.74770750862539	2.51644261635892	2.77397665613822	2.692753568856	2.83234898828096	2.52608407701593	0.0661993618302824	0.933159804599479	1
Merged-chr8-13602727-2	chr8	13602197	13603197	+	957.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-40236.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	3.25371530483233	3.11324151198104	3.09966211145253	3.10669111432045	2.91316494048643	3.39404766520684	-0.0576835700674889	0.93231022123669	0.985087224393733
Merged-chr15-96802173-2	chr15	96801673	96802673	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-102445.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	3.61286571563621	3.56426090294265	3.67235109815606	3.20564529607179	3.13299490856227	3.59134868783754	-1.15231945340031	0.0662536421778337	0.336082492827787
Merged-chr15-5414602-4	chr15	5414113	5415113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81705.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	5.91442486091591	5.82467767013262	5.34898483290609	5.8864700815974	5.73757843201658	5.60431473730428	0.0329491729149569	0.923921790843692	0.98282666256532
Merged-chr7-43525556-2	chr7	43525056	43526056	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	7615.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	2.82103193756625	2.74441706726555	2.90913489813389	2.85365336875445	2.63645142636694	2.6728022246835	-0.522159314977799	0.47807437174127	0.823616627077609
Merged-chr12-8313921-4	chr12	8313407	8314407	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	474.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	7.09925910725645	7.44926436845792	7.01346159730061	7.08399244686151	6.88918774300096	6.4997454073582	-0.534195474901744	0.0660095332155303	0.335347795471846
Merged-chr7-99782162-4	chr7	99781676	99782676	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15012.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	5.50096400279767	5.30990510435586	5.40907242805088	5.62377899081469	5.72239409280007	5.56104509077739	0.444767029603873	0.173355178570744	0.552156549476131
Merged-chr4-141156460-4	chr4	141155951	141156951	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	RSINE1|SINE|B4	8529.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	5.43067484431826	5.91887708865457	5.82769773801467	5.48984480914908	5.79952976183822	5.51555222275708	-0.22534814847897	0.51935852397935	0.845789800432022
Merged-chr11-116620518-2	chr11	116620018	116621018	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	3734.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	5.8652671206557	5.62201546566614	5.97970940915292	6.11700410989979	6.1524626340828	5.87364817404107	0.420053712289115	0.176779757089027	0.55734654546316
Merged-chr10-99211690-4	chr10	99211216	99212216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51515.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.56936638757222	6.55473974296828	6.10170827880747	6.88136438893025	6.81411231103114	6.21088334974177	0.387292045507103	0.233329389980663	0.629682827928185
Merged-chr6-88069970-4	chr6	88069493	88070493	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14480.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	4.24342708768087	4.28357165729236	4.04005367946229	4.44015562673547	4.41835870261846	4.52320735135302	0.673834546882294	0.139291990376736	0.498718069503763
Merged-chr6-38712346-4	chr6	38711850	38712850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	MIRc|SINE|MIR	49281.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	7.26005984248232	6.86638289016241	6.41487051019417	6.96892635981373	7.39197558101227	7.09505426806205	0.399239326894809	0.209373394785655	0.600867125381967
Merged-chr2-167633137-1	chr2	167632637	167633637	+	605.0	f0_balb.idr	Intergenic	Intergenic	-1132.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	6.2517387661321	6.51144707442745	6.21751164494622	6.63275341449068	7.00406998476791	6.51739170852586	0.650434274853548	0.0272610336118465	0.196699278943334
Merged-chr7-28671357-4	chr7	28670859	28671859	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21490.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	3.71311519666684	3.71560148522548	3.86153987847073	3.82980536446818	3.5194675990851	3.67726158392093	-0.277587747706393	0.612467317126348	0.886746020139708
Merged-chr16-93913570-1	chr16	93913070	93914070	+	652.0	f0_c57.idr	Intergenic	Intergenic	15997.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	4.86790617984859	4.61061350596819	5.06933689870344	6.77676770658662	7.01239141912806	6.79421256571146	3.77559866128942	7.49991151401087e-28	2.49621054903127e-24
Merged-chr14-17428022-4	chr14	17427501	17428501	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-232959.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.27583759136353	4.69609807158889	4.82119868449413	4.3337871475461	4.40561618326934	4.74477830235228	-0.277177866801878	0.552562310664875	0.861794619516091
Merged-chr17-87143326-3	chr17	87142824	87143824	+	907.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35645.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	3.29210077413905	3.22550346049077	3.08903295126186	2.79885120000201	2.79025679475862	3.16155289082194	-1.34838716012084	0.0606457368904585	0.31901697276402
Merged-chr11-94355690-2	chr11	94355190	94356190	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 25 of 30)	MER5A1|DNA|hAT-Charlie	27689.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	3.0645036708129	3.09389601382626	3.0796109229564	2.73193429520256	2.94868214068543	3.36704599611657	-0.177691416096355	0.809365928250056	0.954721853010197
Merged-chr19-56745239-4	chr19	56744760	56745760	+	940.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22888.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.68141738614226	6.88443319540242	6.48825717638369	6.75653647015258	7.02089048164027	6.84796409821005	0.27945528427527	0.30117901860693	0.697863295363654
Merged-chr8-72162268-2	chr8	72161764	72162764	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1064.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	7.10558006845924	7.24308894433671	6.90766312250413	7.7615055251507	7.8961003521374	7.37293961050676	0.887994286022379	0.00075601262847756	0.0145213062766299
Merged-chr13-15850556-4	chr13	15850057	15851057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	Arthur1|DNA|hAT-Tip100	43314.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	5.01799544719813	5.19637422456114	4.98346854414693	5.40334289085654	5.33451046641789	5.55374993667913	0.706320224100432	0.0472494796831573	0.275328218747494
Merged-chr15-103310609-4	chr15	103310136	103311136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-198.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	6.12675376101514	5.80116547494877	6.18186130623516	6.10207730423347	6.04527000268491	6.07330266524082	0.0566487121218779	0.8506833807792	0.964981271430729
Merged-chr6-146125021-4	chr6	146124511	146125511	+	960.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	190889.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.82666432010274	3.72977921653344	3.54851276373678	3.63646899666492	3.44730535996944	3.67451764320535	-0.446318618506487	0.428673169513285	0.795420465213011
Merged-chr2-12174934-4	chr2	12174428	12175428	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 22 of 29)	intron (NM_001001309, intron 22 of 29)	-126318.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	2.78967409494552	2.97396222456128	2.9781488081668	3.03325957840216	2.98716156703034	3.22106831050714	0.761348861791199	0.267059671215027	0.664531757479465
Merged-chr7-110018718-1	chr7	110018218	110019218	+	1000.0	f0_balb.idr	intron (NM_181517, intron 1 of 24)	CpG	467.0	NM_001362172	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	7.73396232990782	8.05251255539319	7.986378839133	7.50562154015575	7.72678147963295	7.67062371586962	-0.419245898753773	0.0711421765919381	0.349837375442467
Merged-chr9-100866215-4	chr9	100865717	100866717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	168667.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	4.54693476306655	4.5041523901013	4.26369686571822	4.23022032986027	4.29139769539375	4.74084909311719	-0.0520553852356828	0.911956918145483	0.980211734893551
Merged-chr12-52049547-4	chr12	52049050	52050050	+	949.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21487.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	3.44335142789413	3.03305675388887	3.07750978790022	3.18777863336707	3.00520605155297	3.43411519483905	0.0574133106400563	0.933599376674998	0.985573927104456
Merged-chr12-110932521-4	chr12	110932008	110933008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 9 of 20)	B1F|SINE|Alu	43244.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	6.85127466999626	6.59376365261255	6.63638606562405	6.5940026931807	6.85962662773215	6.46372440603673	-0.0623095604204777	0.82207206944776	0.958041123079214
Merged-chr13-21161367-4	chr13	21160873	21161873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18318.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	3.40595176266252	3.74757880850516	3.47264419867958	3.43567571148405	3.39943062848175	3.37299525457258	-0.563292652980552	0.345165053380397	0.733666487940844
Merged-chr5-127584598-2	chr5	127584098	127585098	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32794.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	2.13066517954449	2.22984611039102	2.45605772922025	2.44219769368036	2.48121335473229	2.5302885543963	1.40197740715605	0.109727984311625	1
Merged-chr17-71475448-4	chr17	71474948	71475948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028887)	promoter-TSS (NM_028887)	-105.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	8.11160626066596	8.25209619656187	8.18111221376151	8.2816457347245	8.64479559999872	8.36190136182532	0.364791970898149	0.0999972595949537	0.421828744049526
Merged-chr7-19075249-2	chr7	19074749	19075749	+	973.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-951.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	2.72572849307656	2.93651377222265	3.02482805846924	2.87864232643805	2.92264249865076	2.98076921373831	0.139072273576023	0.843009261059896	0.963253932166159
Merged-chr12-76614544-4	chr12	76614028	76615028	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	intron (NM_013675, intron 15 of 35)	-66603.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	5.11389509908783	4.65588869754903	5.04086373440153	4.84341911765525	5.15944994468208	5.0014927517659	0.139175448435016	0.731367787971991	0.931363959034745
Merged-chr12-52604933-4	chr12	52604422	52605422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2600.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	7.85338440295344	8.14362805194229	7.59930096697782	7.94056829778601	8.21141627717959	7.72322280046784	0.126673516689894	0.632525864557553	0.895571551612667
Merged-chr6-58606930-4	chr6	58606433	58607433	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	10261.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	3.30298498762696	3.49053369248972	3.56797883691786	3.29812378366461	3.45354981917919	3.63724040426166	0.0405940097409087	0.946004828045894	0.98796006280508
Merged-chr17-43579911-4	chr17	43579420	43580420	+	918.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	11469.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	6.58521989826815	5.95681624175456	6.07080389717073	5.98677632256244	5.97084046545547	5.94406229915137	-0.466556169185519	0.153803094188401	0.522865168378349
Merged-chr7-19669097-4	chr7	19668611	19669611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4081.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	6.24967419530857	5.92251557201408	6.13679579455108	5.98899925567956	6.13243248549477	6.11164892003505	-0.0486473449985309	0.86940460786353	0.969788171765313
Merged-chr6-134259772-3	chr6	134259274	134260274	+	681.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-136555.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.68295877005802	3.40166449935167	3.84880991099809	3.47032871544076	3.59554407072371	3.82298461504637	-0.0623146100495024	0.91538727751002	0.980959026698783
Merged-chr3-90438105-2	chr3	90437605	90438605	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-4469.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	5.13880034836117	5.31490930405134	5.75007572519273	5.47350582936946	5.77585787156681	5.58154903260907	0.396116646825551	0.279688305003254	0.677347473156491
Merged-chr5-104508488-4	chr5	104508013	104509013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166581, exon 1 of 2)	5' UTR (NM_001166581, exon 1 of 2)	161.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	6.57666278238282	6.64931197157616	6.33259901917281	6.64364653627842	6.1368231780117	6.35291224816066	-0.229776545196573	0.441093555438962	0.802258247414482
Merged-chr2-172401245-4	chr2	172400709	172401709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	7415.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	6.70131348910703	6.39005201177817	6.49540328009812	6.14715694636119	6.36264862100654	6.55460241940893	-0.288070311446016	0.316787216212624	0.710777474639496
Merged-chr5-17839330-4	chr5	17838825	17839825	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	Lx5b|LINE|L1	-3429.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.06437476071912	6.34590621259594	5.74583934312254	6.05772402795992	6.27959762700684	5.99157847477735	0.0580412599303027	0.858168663059564	0.966839848129809
Merged-chr16-23281715-2	chr16	23281215	23282215	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-8755.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.35915171473737	4.29070626532169	4.16039740255774	4.23278321014655	4.23604917205749	4.36518852753666	-0.00985049403255905	0.982754117071155	0.996084390562607
Merged-chr7-46845801-4	chr7	46845311	46846311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	7.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	7.55072589781569	7.92746632788607	7.86058711687231	7.81641803481598	8.00713650792232	7.93248808579675	0.190813471480186	0.41493691407539	0.786115461363139
Merged-chr5-142901065-2	chr5	142900565	142901565	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5689.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.46662478945642	3.46788336112359	3.76356648798351	3.67779740284905	3.64516350020128	3.87977473289884	0.578616589143587	0.304387356891089	0.700883185755923
Merged-chr10-17947401-4	chr10	17946896	17947896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	CpG	671.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	7.17960791411626	7.17874536806733	7.20790764972734	7.16665329753029	6.83988026987406	6.8683989041552	-0.334110048932668	0.179601172986919	0.56110368604883
Merged-chr9-65655650-4	chr9	65655143	65656143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028030, intron 6 of 7)	ID_B1|SINE|B4	-20905.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	4.13573008070839	3.76930075351244	3.79851327503104	3.77068178246315	3.82415251653873	3.70760510779676	-0.458813585626419	0.394849567139209	0.772579826044138
Merged-chr1-84838861-4	chr1	84838358	84839358	+	978.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	446.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	7.77081052573889	7.75709248954929	7.96062791457645	7.88931547075132	7.70463966222032	7.91979284813963	0.0125247480036494	0.955214535131214	0.98974202431386
Merged-chr17-25189097-2	chr17	25188597	25189597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290736, intron 1 of 14)	intron (NM_001290736, intron 1 of 14)	183.0	NM_001290736	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	5.17498856583888	4.7495382739265	4.75118685642661	4.86622728854384	4.51869248693506	4.65398221514386	-0.522018564707855	0.221510939781338	0.616231436888183
Merged-chr13-54824883-4	chr13	54824384	54825384	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35479.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	5.461160534124	5.47317704934876	5.75907361161505	5.33970216688817	5.38044070068088	5.19198643060124	-0.479828495893125	0.163602078667868	0.537647883161994
Merged-chr8-13157933-2	chr8	13157433	13158433	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1228.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	5.02795796448035	4.81600488082858	4.68215233775167	4.97719764399584	4.9139737558886	5.24618315703092	0.403886785570398	0.310190016768287	0.705739523510061
Merged-chr1-64485544-4	chr1	64485045	64486045	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-47259.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.36992662852624	4.40266929516961	4.02035013561002	5.01259385466379	4.63521188948974	4.35775916785031	1.0277822174904	0.0374117038734874	0.238961622469114
Merged-chr17-37525650-4	chr17	37525141	37526141	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4316.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	5.56456482526279	5.68751967313581	5.61951298331284	6.32752457401924	6.32085524411138	5.76837436817255	0.96850983064327	0.00303790206267444	0.0424979412964047
Merged-chr14-66846606-4	chr14	66846114	66847114	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21986.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	6.097510630403	5.58570031207415	5.72017804211762	6.36289745200691	6.09447469884737	6.70414006295884	0.98007717098214	0.00449886594674535	0.0568131184848668
Merged-chr8-70527732-4	chr8	70527245	70528245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199631)	promoter-TSS (NM_001199631)	2.0	NM_010223	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	7.13997352052485	7.17298845552906	6.98412593791649	7.27490175556476	7.04626803647208	7.25671141087813	0.127474807639738	0.600034281789816	0.881428792443455
Merged-chr7-130669257-4	chr7	130668754	130669754	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-23302.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	4.19636943518333	4.74231424496134	4.80245754329193	4.78559591917874	4.79246123156005	4.79405327534106	0.436015431719089	0.330511073590601	0.721952410959523
Merged-chr9-113772176-3	chr9	113771655	113772655	+	657.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 5 of 39)	intron (NM_001114347, intron 5 of 39)	-21175.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.82733769358895	4.79442360287807	4.76363465409696	4.98147754949352	4.87650392632912	4.97788830267906	0.324097484039428	0.395216511101662	0.772579826044138
Merged-chr6-129344615-4	chr6	129344123	129345123	+	953.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5621.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	3.38391864524651	3.1782249343318	3.38754222899309	3.2229231443479	3.19762999848678	3.80199658882746	0.425697893505483	0.518123876533962	0.845069223746235
Merged-chr5-99226748-3	chr5	99226251	99227251	+	635.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	26176.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.65612061209652	3.59611717546815	4.28388927015843	3.87986904815755	4.02004809985066	4.22855048597502	0.513022498411622	0.373973475495172	0.757702871295154
Merged-chr4-43464808-2	chr4	43464308	43465308	+	644.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-10182.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	4.89830048753313	4.74969482154	5.07449959940835	4.6140659209846	4.56761637589591	4.63569705950924	-0.700278728080126	0.0839504958605829	0.38355770149173
Merged-chr4-130820099-2	chr4	130819599	130820599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	27562.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.10885396548756	4.26819592381621	4.72099713926546	4.75935078373775	4.25975433155099	4.51924267881657	0.362720799783013	0.463138122286736	0.815662635550835
Merged-chr17-36271330-5	chr17	36270875	36271875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	56.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	8.84704540556898	8.97202064220595	8.47557177362626	8.8791993392913	8.69768670834005	8.58018515898016	-0.0834973141382195	0.721267425975515	0.928451291671431
Merged-chr14-20298303-4	chr14	20297805	20298805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3615.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	5.55991645272944	6.07159788396975	5.73099716686369	6.14251459149138	6.39070546349086	5.70962700257841	0.541458310654544	0.128832559887589	0.479909997623381
Merged-chr2-132091872-2	chr2	132091372	132092372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	53236.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	2.91712637574592	2.95544432062845	2.92800434490756	3.02601612570877	2.73065485152921	3.05993213464239	0.0359291608222021	0.959355789096385	0.990174309444982
Merged-chr3-60528015-4	chr3	60527538	60528538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	26859.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.47022421963627	7.5627776223478	7.26534343971329	7.70121027633918	8.06446468010131	7.37033698329161	0.451008855191989	0.0999521992819507	0.421702798795891
Merged-chr9-124021887-3	chr9	124021375	124022375	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009914)	promoter-TSS (NM_009914)	-96.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.39657106775158	6.37747115260306	6.11869408428166	5.21067241680973	4.85008003987112	5.68664540429959	-1.88861399363496	4.42169782134712e-07	2.63742388758889e-05
Merged-chr10-15262545-4	chr10	15262071	15263071	+	965.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	502282.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	4.17223649785576	3.85878818091958	3.72349272384452	3.59155994539412	3.686004203162	3.79465739090247	-0.800492263628957	0.146442075307993	0.510394244878424
Merged-chr10-43707971-3	chr10	43707470	43708470	+	746.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38188.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	2.85072840879815	2.85833444128109	2.82349559934499	2.7977805301113	2.63660169939045	2.89636146018337	-0.360787664521923	0.617518679360639	0.888810836054056
Merged-chr11-118418176-2	chr11	118417676	118418676	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029502, intron 1 of 4)	intron (NM_029502, intron 1 of 4)	942.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	5.18259088086611	5.29952681708567	5.04835024571391	5.30205634780415	5.13869308065637	5.00333753513011	-0.0616690605819931	0.866008942766202	0.96870531720476
Merged-chr2-165324172-2	chr2	165323672	165324672	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2307.0	NM_080287	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	3.45499215177234	2.97915931597987	3.43185779619517	3.45914181301745	3.43879729857173	3.33562914845871	0.41693959732268	0.526315122707469	0.849395505429032
Merged-chr11-95837370-3	chr11	95836857	95837857	+	869.285706	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-4938.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	5.01743200266949	5.04725713271575	5.47860777995656	5.54538119767879	5.35923439447714	5.48545746055667	0.555586955022305	0.127501259868769	0.477271790294292
Merged-chr17-65726981-4	chr17	65726484	65727484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MIR3|SINE|MIR	45768.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.52111278305736	7.63723037841037	7.51279181205602	7.94323687837606	8.05490235121693	7.59980539064093	0.473305299037782	0.0480261363551366	0.27785712326545
Merged-chr2-78060272-2	chr2	78059767	78060767	+	787.5	f0_balb.idr|f0_c57.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	9090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.34084669336716	3.53495901862017	3.54129984945913	3.18046084017521	3.3867977200919	3.55939953410618	-0.352729171785717	0.564064611417924	0.866177392442008
Merged-chr15-81112718-4	chr15	81112226	81113226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-7679.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.05476140601249	6.96313709553107	7.16752123367755	7.0414503989067	7.26161909600051	7.04897125403662	0.103356109802883	0.673224518519686	0.911316508290439
Merged-chr19-46618525-4	chr19	46618037	46619037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4864.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	6.44465112823771	6.36388565150838	6.42792809090069	6.76882944717813	6.79454924302564	6.71093897177355	0.557787371730685	0.028936499595087	0.2041156543157
Merged-chr8-35625016-2	chr8	35624526	35625526	+	613.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36006.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.21242748725332	4.22460887397334	4.313499006967	4.75174933357862	4.71151581015726	4.38274271041573	0.985788070291876	0.0262563257081855	0.192405882144922
Merged-chr9-40815266-3	chr9	40814776	40815776	+	886.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	14003.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.98353527492604	3.98353146662148	4.09292738520253	5.52861856795061	5.76461118853036	5.57668835567642	4.02000047577021	5.5475443950225e-17	2.26274546088741e-14
Merged-chr16-52038434-2	chr16	52037934	52038934	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	6885.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.59707750572896	3.53137446589764	3.47806740593958	3.56974238087057	3.47561392513179	3.65603206796154	0.088246336707545	0.875765692675969	0.971117457237427
Merged-chr18-73571222-2	chr18	73570722	73571722	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1483.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	5.47584433347075	5.81202450341181	5.67871642412595	5.52289350343395	5.58928296778637	5.57773688745798	-0.186088150575416	0.569206615534305	0.8688875602138
Merged-chr2-148900503-3	chr2	148900013	148901013	+	913.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25001.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	2.61597871230142	2.44898532508421	2.63481483275241	2.64371655226758	2.37722380322486	2.38263990123724	-0.553710937088772	0.499243997146082	1
Merged-chr15-73624024-2	chr15	73623524	73624524	+	659.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	720.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.90001356354407	3.91976688992449	4.17330065711273	3.85817833228549	3.7418416506039	4.19739519281576	-0.183966065422313	0.727554823310053	0.930204882969987
Merged-chr10-22743700-4	chr10	22743194	22744194	+	954.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12247.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	4.71590861508752	4.34642659596874	4.89808645612421	4.27364838032301	4.05257770666162	4.75948848905015	-0.694646304867952	0.168905970560029	0.545531802905646
Merged-chr11-8660987-4	chr11	8660475	8661475	+	924.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	B1F|SINE|Alu	3560.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.82256722082103	5.7574699451972	5.78784520150337	5.36194158852261	4.79197645545792	5.11564403013676	-1.33636078047044	0.000258154579559674	0.00617079180005785
Merged-chr5-102497435-4	chr5	102496937	102497937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	16046.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.90643624419077	3.73584298984683	3.84676577717276	4.26711978528934	4.11655699381962	3.96966156155136	0.892387823875662	0.0775545899677685	0.367513088560743
Merged-chr5-3195620-4	chr5	3195110	3196110	+	763.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148283.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.38090508933084	3.38956488329787	3.38037569121601	3.0781739241183	3.19873163830657	3.28452871101908	-0.805188838088005	0.195123896806371	0.582787221560878
Merged-chr15-81934172-4	chr15	81933672	81934672	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2587.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	3.29672407331811	3.3645307564792	3.23428087998253	3.11401116876438	2.79242710377785	2.80363132293212	-1.81600920030699	0.0130250160935125	0.12107748377811
Merged-chr11-119299056-2	chr11	119298519	119299519	+	974.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138669, intron 1 of 11)	B1_Mus2|SINE|Alu	1024.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	4.81436896026083	5.23043523887355	4.85271279404791	5.18981112236194	4.90160546622493	5.13461287796893	0.184282437612561	0.643630606948216	0.89991566161065
Merged-chr10-34280134-2	chr10	34279634	34280634	+	883.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2056.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	3.72032369260243	3.48058519212968	3.47548150291823	3.79201180254575	3.71981837732072	3.54823639452563	0.435908459318388	0.443682294651681	0.803884349333946
Merged-chr13-64152440-4	chr13	64151947	64152947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361047)	promoter-TSS (NM_001361047)	-74.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	7.79676085689184	7.94701542752934	7.53688057455026	7.94431548716833	8.25998061141415	7.69908669169644	0.317140435265649	0.2260366950886	0.62108381618358
Merged-chr2-24608906-3	chr2	24608378	24609378	+	826.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042528, intron 44 of 46)	intron (NM_001042528, intron 44 of 46)	-133279.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	2.70694860498658	3.0515170654313	2.93270262415217	2.58728921960831	2.5589851703058	2.94710301804731	-1.04540500878114	0.184616795913463	0.568347311818612
Merged-chr7-119894978-2	chr7	119894478	119895478	+	576.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285959)	promoter-TSS (NM_001285959)	480.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	4.78261955391443	5.06644084549412	4.73439433305785	5.30560853823665	5.0603724189561	4.80238121376708	0.432233809675601	0.288757164684803	0.686124851873233
Merged-chr10-77606579-4	chr10	77606069	77607069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301671)	promoter-TSS (NM_001301671)	-29.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	8.73725710172761	8.86713984090818	8.33627688723154	8.53375209648095	8.6538821760197	8.28306584812794	-0.232395559530993	0.342051897673965	0.731142095278512
Merged-chr10-78135244-4	chr10	78134725	78135725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34543.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	6.01243601631423	5.6665504321883	5.44562513135026	5.77512070192288	5.86958350836887	5.8969208827439	0.18809131597921	0.574755750311704	0.870862343796639
Merged-chr6-134072577-4	chr6	134072087	134073087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	36887.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	7.6526490571731	7.8825130466802	7.52247777356441	7.47776229930688	7.71323374556512	7.29237982253422	-0.267991243552462	0.287821146809898	0.685243889635721
Merged-chr12-108919035-4	chr12	108918545	108919545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	24773.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	5.49458140510794	5.47703459815527	5.11266500706997	4.71028028186684	4.8252372599071	5.30653494010771	-0.867915461029978	0.0314373884442804	0.214783004981664
Merged-chr7-145293426-4	chr7	145292940	145293940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7469.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	5.14284843331862	5.2757740741515	5.64117482961128	5.08512606444526	5.12517599519235	5.7492948679137	-0.0320457421132284	0.937229928453393	0.986057836872162
Merged-chr19-5366589-5	chr19	5366130	5367130	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	-183.0	NM_027236	69860.0	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	6.92334482204591	6.73067941491518	6.98329145489503	7.14959881394653	6.97003476242049	7.00103020026585	0.251047762414815	0.314706133588272	0.709059171318814
Merged-chr2-79757900-3	chr2	79757414	79758414	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290743, intron 3 of 4)	intron (NM_001290743, intron 3 of 4)	50134.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	3.27215458997865	3.24835499426732	3.21713543095156	3.43602421633563	3.52697069458505	3.51602388575082	0.963210548105715	0.107484607863633	0.437809832147892
Merged-chr7-25297513-4	chr7	25296910	25297910	+	977.40625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008776, exon 2 of 6)	exon (NM_008776, exon 2 of 6)	545.0	NM_008776	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	5.55912460047535	5.46852463394981	5.79344154351809	5.70837038712901	5.98539449499195	5.92578127132325	0.504887737519706	0.11650586221763	0.455679603553968
Merged-chr11-83640363-4	chr11	83639849	83640849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9029.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	7.46034070569399	7.12748313164716	6.64436382050287	6.72991839778711	6.54957781285162	6.37797611271875	-0.874071254659667	0.00505548129045853	0.0616527168718267
Merged-chr17-8883299-3	chr17	8882805	8883805	+	855.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	33320.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.51979240132348	3.52416442422417	3.39434310759458	3.37405229789602	3.37920991603729	3.46558883082901	-0.305312975992367	0.600421042364678	0.881675637625742
Merged-chr5-35757144-3	chr5	35756656	35757656	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-724.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	4.98866778227526	5.23493580545085	5.09661908885959	4.69267376314003	4.52294441368113	4.84571178641914	-0.964077968802653	0.0148132389913374	0.131467841688603
Merged-chr8-70545898-3	chr8	70545387	70546387	+	568.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	6212.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.81164162337694	5.95132330453868	5.5401399580253	5.00494510896316	5.17123504114119	5.15516418316682	-1.30611539958543	0.00018374877916338	0.00466566018206485
Merged-chr13-54306245-4	chr13	54305755	54306755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65094.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	4.28384250739329	4.10897874276597	4.2434650114937	4.63837857709255	4.87886251896131	4.70004661374379	1.35506293979764	0.00196180351778636	0.030506026370392
Merged-chr13-110368719-4	chr13	110368219	110369219	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11547.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	2.88108031416706	3.10059697578524	2.72897235324468	2.97976387871644	2.83873584693025	3.05387735114045	0.181853658457388	0.802551109430605	0.953232070708755
Merged-chr2-164862614-4	chr2	164862105	164863105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4897.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	7.56058869609591	7.07940480352789	7.14178424841326	7.16800012756514	7.1963065709998	7.3839000383115	-0.0525228327234836	0.842468371576182	0.963031568058414
Merged-chr2-148050577-3	chr2	148050083	148051083	+	889.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3614.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.46710968968801	2.52108474475361	2.57165366801674	2.9300177706761	2.80607390876475	3.23769142928203	2.75521106697094	0.00107877410387031	0.0191106313891508
Merged-chr3-95232538-4	chr3	95232058	95233058	+	893.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172395, exon 3 of 5)	exon (NM_172395, exon 3 of 5)	3615.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	4.73887914264499	4.68304692725576	4.98549681157247	5.04920480396192	5.05605607541885	5.44147551749673	0.833073194095239	0.0348047728649882	0.228809002176656
Merged-chr16-85134390-4	chr16	85133892	85134892	+	860.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	39315.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.29560494670037	6.6992284987781	6.89988009838811	6.50548288776707	6.75379746015492	6.84822306701188	0.0946733636146296	0.750565177122626	0.937564211523741
Merged-chr13-73805474-2	chr13	73804974	73805974	+	629.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 18 of 24)	exon (NM_011390, exon 18 of 24)	41777.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	3.10124515048943	2.72770686863126	3.11289072472563	2.91342807735096	2.9511607377568	3.29269260070648	0.305347131178826	0.674301039975169	0.911841916826811
Merged-chr11-47063957-4	chr11	47063458	47064458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	253159.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.85181290501516	5.5930071434029	5.68695245243434	5.68724891112234	5.55807730528107	6.01001638520366	0.0664847355966655	0.841619686426284	0.962988975342446
Merged-chr8-84554561-2	chr8	84554122	84555122	+	766.5	f0_balb.idr|f1_balb.idr	intron (NM_001252060, intron 17 of 47)	intron (NM_001252060, intron 17 of 47)	108230.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.2165650391094	2.11204590104939	2.28320816190915	2.11665626467645	1.83721563941213	2.09431458236411	-1.4639648428163	0.149719306780427	1
Merged-chr1-186855729-3	chr1	186855215	186856215	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106357.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	2.63644061691487	2.49093550600344	2.50134437931052	2.92425166967522	2.89643002716471	3.07798335442086	2.35527751540543	0.00380091980796591	0.0500343197882024
Merged-chr11-50224616-4	chr11	50224105	50225105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-730.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	7.73738997746912	7.70635512763714	7.55858508283377	7.38763829455563	7.67771823376817	7.25443351970671	-0.305736901595083	0.211419268528879	0.603943450931238
Merged-chr4-155220914-1	chr4	155220414	155221414	+	824.5	f0_balb.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	1621.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.57650309025432	5.74916624924445	5.61076493330444	5.57471175603259	5.44129791018668	5.20537626265998	-0.426467200709365	0.206171982005198	0.596809057329073
Merged-chr4-59374646-1	chr4	59374146	59375146	+	609.0	f1_c57bl6.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	63987.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.61987216409855	2.33362321252886	2.51484401994461	2.29409404112547	2.16662531606634	2.33018517095235	-1.59786342881124	0.0708509261880502	1
Merged-chr6-129436237-4	chr6	129435750	129436750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15750.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	5.87882941457853	5.63203322492622	5.59571670725523	5.53846808110378	5.64628703843904	5.32160913913997	-0.361370069929725	0.282679159656882	0.680597768538116
Merged-chr16-78236547-2	chr16	78236047	78237047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	18907.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	6.3147617493685	6.2223856254851	5.57822855184064	6.00219459670389	6.30291460643674	5.47761667394745	-0.175233933181217	0.656802766165845	0.904693205515276
Merged-chr15-95798452-1	chr15	95797952	95798952	+	549.0	f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	ORR1B2|LTR|ERVL-MaLR	7609.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.51656536937521	6.66362317525212	6.76854903203943	6.4630527684468	6.71714543575897	6.55485647201579	-0.0955383494851776	0.721153987708524	0.928418800211379
Merged-chr2-92478479-4	chr2	92477976	92478976	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-17958.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	5.25272632979714	5.25305259229102	5.99809274374418	5.024067144876	5.16452516594686	5.5412296440401	-0.555570125264755	0.185607579308998	0.569827526810432
Merged-chr9-111063037-4	chr9	111062543	111063543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5525.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	7.19216288630839	6.91589037440943	6.61913256035497	5.47060392577724	4.92059222834189	5.48017412766783	-2.86285263086718	2.06016031247339e-16	7.42085797750157e-14
Merged-chr18-65581760-2	chr18	65581260	65582260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-658.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	7.31918927904525	7.28991422183411	7.10872447179176	7.48441765132904	7.11636345764217	6.86735482570147	-0.0872617592812258	0.748814592040514	0.937087780077821
Merged-chr10-125388765-7	chr10	125388268	125389268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59805.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	7.92298883089367	7.91325065172336	7.78170071145327	7.99674768292063	8.13498894177165	7.86333789123726	0.18707775697846	0.394304299295155	0.772269696737413
Merged-chr4-95053367-4	chr4	95052878	95053878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.34259252199826	8.68699614177691	8.2227556527423	8.44192142493684	8.87822617721831	8.47919416453797	0.252974749955748	0.313345404114649	0.707942154711635
Merged-chr7-31131037-4	chr7	31130535	31131535	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 18 of 18)	ORR1E|LTR|ERVL-MaLR	-4012.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	3.65642098566597	3.63664149116331	3.80003769058973	3.42841871354421	3.57481734713517	3.72143831489802	-0.413145219592913	0.46069958477514	0.81467868937752
Merged-chr6-94506791-2	chr6	94506291	94507291	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6477.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	4.69702443628098	4.71397831597253	4.82707289356437	4.09285081694197	4.17215352339072	4.194193758709	-1.52721619209253	0.000608560431563969	0.0122696907868839
Merged-chr5-23440003-1	chr5	23439503	23440503	+	580.0	f0_balb.idr	intron (NM_026984, intron 1 of 25)	intron (NM_026984, intron 1 of 25)	5574.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	3.2741972274161	3.29362603366036	3.242730217354	3.0980510578753	3.17357509401983	3.42316086282985	-0.16082883840817	0.7986575103414	0.952045702422384
Merged-chr18-33213496-2	chr18	33212984	33213984	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001347624, intron 1 of 5)	intron (NM_001347624, intron 1 of 5)	378.0	NM_133774	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	5.66613303304574	5.56889417586714	5.56362699861461	5.59680789666339	5.87206908927499	5.62642973126211	0.206274470991391	0.521742358262267	0.847186270857377
Merged-chr2-166731564-2	chr2	166731064	166732064	+	691.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-17732.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.17238887762236	4.3808362972806	4.45274827196599	4.96601295989881	4.88896175406486	4.93689674008059	0.435881170036776	0.357170592826989	0.743779426322518
Merged-chr5-146675388-4	chr5	146674882	146675882	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90143.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	2.58241654592631	2.36912263767387	2.51092572239474	2.86922862503016	2.52301127546771	2.71580305178201	1.25183343379658	0.122501550895615	1
Merged-chr2-90965684-3	chr2	90965128	90966128	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	25231.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	4.51805887581146	4.73406992646889	4.5358428082815	4.33818691008552	4.19223737857915	4.34344309387446	-0.811599196661257	0.0649553706253806	0.332296740178092
Merged-chr11-100570653-4	chr11	100570144	100571144	+	949.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-4295.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	5.20942795736579	5.26568030519565	5.07404387452118	5.37387718913958	5.6259167149318	5.49457894838947	0.618153815555146	0.0741797623730038	0.358274301574931
Merged-chr16-92398912-4	chr16	92398375	92399375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1203.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.73699560368982	7.88717083183415	7.66243970721053	7.25155132336196	7.29924464234043	7.08032729960611	-0.803382913920567	0.000563099388313932	0.0115319650265384
Merged-chr4-105252864-3	chr4	105252361	105253361	+	761.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95514.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.73448345736875	3.91103847798347	3.96934713127	4.68113430038017	4.67136314119018	4.4259957603918	2.05114347272623	2.32803960667737e-05	0.000831577445397268
Merged-chr10-60705382-4	chr10	60704906	60705906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8916.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	5.76678059039039	5.40617467146776	5.25369918967861	5.53639636883852	5.47428548134393	5.02279442712247	-0.245087272139656	0.523452711360777	0.84820746264669
Merged-chr3-28781196-4	chr3	28780681	28781681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177586)	promoter-TSS (NM_177586)	-96.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	3.12895344880982	2.79485282510803	3.00157460530717	2.99796798346648	2.90696907229347	2.89184131120886	-0.233935597841066	0.739119876078199	0.934160003144178
Merged-chr9-66513438-2	chr9	66512938	66513938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	1155.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	3.39639416690882	3.39254118314102	3.61826476421559	3.53979633523445	3.38997843767096	3.42193412716102	-0.0568822441370798	0.922659126071363	0.982621045978137
Merged-chr6-125165686-4	chr6	125165164	125166164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008084, exon 1 of 7)	5' UTR (NM_008084, exon 1 of 7)	109.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	7.76389684653866	7.39339062427539	7.52997855276279	7.6421632888288	7.77165278807588	7.75245050088557	0.217540194935667	0.355777545911288	0.742576080875594
Merged-chr7-122094721-2	chr7	122094229	122095229	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360744, intron 2 of 4)	ORR1B1|LTR|ERVL-MaLR	7119.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	2.54016540699572	2.50767091976217	2.83100999719328	2.85930764532717	2.66833656073461	2.65830085140311	0.567252609255582	0.463517733241088	0.815968509690152
Merged-chr19-7505864-2	chr19	7505364	7506364	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	11426.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	3.84441074173829	3.50081527335629	3.79925365286486	3.67501401764437	3.50355972430135	3.86807549108323	-0.129764038422051	0.819962405797829	0.957376438106023
Merged-chr17-48320348-3	chr17	48319804	48320804	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4142.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	5.2726993146452	5.25193592467206	5.77110779230086	5.51199495620522	5.5973657445215	5.87769867053436	0.424143203436136	0.241579466865021	0.63866506573377
Merged-chr3-89437566-4	chr3	89437045	89438045	+	911.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	841.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	3.08155014946593	3.23667719795287	3.00997276922363	3.07949792130368	2.99946091664536	3.25611631068682	-0.0327861532553094	0.960612214437082	0.990386809359123
Merged-chr7-139390048-2	chr7	139389548	139390548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183144, intron 1 of 15)	intron (NM_183144, intron 1 of 15)	939.0	NM_001127363	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.9592054736022	3.9957622708048	4.02878401574281	4.15591923533666	4.06277357136207	3.89642046203891	0.161618398689806	0.742592310884662	0.935299421834751
Merged-chr4-34687329-4	chr4	34686833	34687833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011895, exon 1 of 8)	5' UTR (NM_011895, exon 1 of 8)	105.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	5.56971422397586	5.82636435415221	5.70653906799031	5.40243928987191	5.35482248366366	5.52512000502734	-0.535734433982855	0.101839863178292	0.425738109693493
Merged-chr11-105589511-4	chr11	105589031	105590031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181071)	promoter-TSS (NM_181071)	-455.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	8.14318775618127	8.01990283217729	7.72607889342936	7.97829663025267	7.85127236464786	7.34259294193225	-0.312507515964689	0.248791419913748	0.645819769301048
Merged-chr8-126695065-4	chr8	126694586	126695586	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101650.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.78682861138523	3.40286840931952	3.50630423974711	3.63248009356987	3.79742249865009	3.40184759966114	0.170455399996288	0.778214875610827	0.945438331205668
Merged-chr11-101640248-2	chr11	101639748	101640748	+	951.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	12299.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	3.09386843922319	2.83613921843799	2.72479208956213	3.16116148762019	3.12931260747364	3.1202445766381	1.0860460992207	0.135661222014676	0.492392539210344
Merged-chr1-23432308-2	chr1	23431808	23432808	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49133.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.65204422876081	5.0158348120553	4.97703905970075	4.70159608021878	4.807692020406	5.00720890132194	-0.11388650632568	0.778911613639818	0.945562264368846
Merged-chr6-89360880-2	chr6	89360380	89361380	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	intron (NM_008881, intron 1 of 31)	1733.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	2.06111548031678	2.09965614798629	2.26830713481254	2.19935988234425	1.93486461721009	2.00884681262046	-0.689355289285389	0.463641884888177	1
Merged-chr3-60499395-2	chr3	60498895	60499895	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	-1784.0	NM_001253710	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.87193305383657	4.85717467530226	5.16965588754231	5.04382573510529	5.03784537411919	5.16986506782229	0.253696809372631	0.500829997984534	0.835260125938228
Merged-chr14-103483906-2	chr14	103483406	103484406	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-29435.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	3.082091123698	3.09492266109992	3.20228320561718	3.10275413634365	3.182927507599	3.53614315986336	0.648492890160559	0.320397644320516	0.714253897125111
Merged-chr2-35979833-4	chr2	35979335	35980335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029774)	promoter-TSS (NM_029774)	-211.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	6.86436194378866	6.52669388244548	5.94936574594846	6.67944557596521	5.78722750803788	5.96003563366996	-0.485034530765353	0.226218720630119	0.621140322788657
Merged-chr4-32556929-2	chr4	32556429	32557429	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	RMER15|LTR|ERVL	14733.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	5.28594098342843	5.32344732817087	4.97652106332049	4.2934881445604	4.20109423680483	4.70173153049184	-1.90286547843343	1.20120556918096e-05	0.000468368851923192
Merged-chr19-29501633-3	chr19	29501161	29502161	+	749.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20326.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.50378139365281	6.98735555861543	6.65110924806693	6.71476410410412	6.91767881847722	6.69348052108896	0.0762951098563666	0.786669864090316	0.948545473730974
Merged-chr11-61749423-4	chr11	61748912	61749912	+	858.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	12676.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	4.79260873866937	4.36825391816803	4.88436978992998	4.49327226996501	4.7975256294232	4.56915580803852	-0.141420041921826	0.752149317580876	0.93809248920437
Merged-chr13-99324404-2	chr13	99323892	99324892	+	575.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20286.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.10739713872237	6.02873435863183	6.03490327699218	6.13458762159729	6.27885346358052	5.45502602002353	-0.0641795032241256	0.855338867814192	0.966144526071856
Merged-chr13-119310195-4	chr13	119309702	119310702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98809.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	4.9274791982743	5.27710782505207	5.44468767484457	5.22727722863217	5.17196795324539	5.20847831512743	-0.0476772293924652	0.898503103285181	0.976357805207492
Merged-chr15-102510353-4	chr15	102509851	102510851	+	925.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163643, intron 1 of 15)	MIRb|SINE|MIR	349.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	5.54259149812244	5.848589000199	5.62561864938016	5.3736437475883	5.44114844210624	5.19289955246609	-0.632631267786486	0.064070156241183	0.329853818983591
Merged-chr12-83691007-2	chr12	83690533	83691533	+	765.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	B4A|SINE|B4	2470.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	3.18599671306916	2.9855970947057	3.25917132475299	3.17863382294205	2.95853485131814	3.2193895947184	-0.113852858818317	0.863747434864961	0.968269312109804
Merged-chr10-62491067-3	chr10	62490585	62491585	+	822.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4280.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	5.64697793731098	5.8563382689262	5.72955096685429	5.51260748037326	5.73438038201069	5.79122278468271	-0.120446670325388	0.705755756603404	0.922834459892351
Merged-chr15-12375099-2	chr15	12374599	12375599	+	876.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	53603.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	3.01370587289591	2.98744002571424	3.15786912620889	2.81125227332547	2.87343964333295	2.81617550803876	-1.04614191530169	0.13572211433836	0.492469297371423
Merged-chr11-114671174-2	chr11	114670674	114671674	+	671.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	intron (NM_001048058, intron 2 of 3)	2393.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	2.81005430215465	2.66825790367214	2.87446310250263	2.64128199366578	2.7350433791716	3.05962546247455	0.172689110190128	0.817318843210732	0.956767881392089
Merged-chr16-57526721-3	chr16	57526228	57527228	+	738.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	ID_B1|SINE|B4	-22514.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.80845453578568	4.85366730030162	4.83381193185114	4.30985940508015	4.47822561309449	4.78986138257518	-0.715240304574141	0.0922345832968253	0.404610670970173
Merged-chr11-120352109-2	chr11	120351609	120352609	+	970.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_038126)	TTS (NR_038126)	3431.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	5.01294881836518	4.76343616855457	5.43007755358601	4.52656874681146	4.76482445136033	5.15656729199278	-0.551591607089375	0.220350748372453	0.614730271259138
Merged-chr9-64739878-2	chr9	64739378	64740378	+	616.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.14179712461337	3.83068558298462	3.89325567127712	4.24168137573859	3.63125529647221	3.63163670735698	-0.2776709516436	0.634038440487082	0.896247399650521
Merged-chr12-72844422-4	chr12	72843934	72844934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73331.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	5.77730520475739	6.07534186261213	6.05852468749864	5.84103947767696	6.02302305210983	6.00848173479017	-0.0238775187035842	0.937536402159328	0.986057836872162
Merged-chr7-24083008-3	chr7	24082475	24083475	+	678.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289637, intron 1 of 3)	intron (NM_001289637, intron 1 of 3)	1078.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	3.99942047027703	3.85350322505365	3.89552707220513	4.39025836797117	3.95513043947501	4.16269565587828	0.757309085367956	0.136011552319652	0.492905159738987
Merged-chr15-80007252-1	chr15	80006752	80007752	+	620.0	f0_balb.idr	intron (NM_011057, intron 1 of 6)	MTD|LTR|ERVL-MaLR	7556.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	3.74623374285318	3.64756195158828	4.00041496205544	3.44893119354645	3.15757880329276	3.30051810875412	-1.86821746426101	0.00273603610579267	0.0392449736753657
Merged-chr6-17281727-4	chr6	17281193	17282193	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 1 of 2)	intron (NM_016900, intron 1 of 2)	508.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	3.65103287061821	3.29701232881906	3.82339232965852	3.44338520665435	3.31036820605747	3.38009252074937	-0.828582427092247	0.179841628387578	0.561345475440548
Merged-chr7-19628738-4	chr7	19628252	19629252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290457, intron 1 of 10)	intron (NM_001290457, intron 1 of 10)	686.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	8.0862190485583	8.13266216154798	8.08997096027611	7.85869988064734	7.99640743582557	7.86877672941167	-0.27096384981262	0.195756881999694	0.583438527663774
Merged-chr2-118490359-4	chr2	118489852	118490852	+	892.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10656.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	4.71979077697936	5.01150992361159	4.49689163682619	5.2765581918599	5.43619579117917	5.2703796346789	1.17537055188597	0.00374824992528667	0.0495369091142398
Merged-chr3-89389239-4	chr3	89388686	89389686	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1515.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	4.64288743298415	4.28920623269127	5.05921141384722	4.62090483369628	4.73540015148261	5.29504061540734	0.485857822279751	0.319918823972089	0.713801665327798
Merged-chr17-25272116-2	chr17	25271621	25272621	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011665, intron 1 of 6)	PB1D7|SINE|Alu	1310.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	4.20764326874634	4.53088258851109	4.38650116184989	4.42280595046772	4.22469253258331	4.27506989530733	-0.196410129562265	0.66811352157913	0.908976375106763
Merged-chr19-6273971-4	chr19	6273471	6274471	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2925.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	5.00876927364215	4.66824843922755	5.23795758717015	4.68026457126395	3.8396168338694	4.93305031882445	-0.899384942842783	0.310737087728875	0.706022433069834
Merged-chr7-99124092-4	chr7	99123601	99124601	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	RLTR11A|LTR|ERVK	17043.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.60615665789457	3.65082862818488	3.63879430046886	3.98857140938579	3.7012855017577	4.00985367322978	0.878783420891682	0.104640351799051	0.431719277692159
Merged-chr16-76408380-4	chr16	76407878	76408878	+	983.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-34551.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.17372426502091	3.97861946404481	3.90132477107669	4.80244575731282	4.32378050599048	4.08467158702766	1.11865748473498	0.0323046603737658	0.218436729668413
Merged-chr18-20746356-4	chr18	20745857	20746857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019737)	promoter-TSS (NM_019737)	47.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	7.30959227214677	6.64068642005702	7.18897238486034	7.01454158535434	6.42796515897849	6.78393460261609	-0.48422418819233	0.128155365419751	0.478787340420556
Merged-chr8-85081886-1	chr8	85081386	85082386	+	736.0	f1_balb.idr	intron (NM_001001493, intron 3 of 3)	intron (NM_001001493, intron 3 of 3)	923.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	6.97128970383241	6.92114904618828	6.97554057287495	6.84735993481652	7.12528572695352	6.57859186822348	-0.10827586489552	0.690782266888092	0.917977377427794
Merged-chr9-122886902-4	chr9	122886416	122887416	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1555.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	5.49690580092932	5.95449079275389	5.88671425214482	6.228684658444	5.89126547513405	5.8496018307261	0.37005676187469	0.268327596063609	0.665391603019622
Merged-chr8-70791024-2	chr8	70790524	70791524	+	940.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	1409.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	4.56294258128017	4.60663017024775	4.26982711662773	4.0835525275265	4.16678741226146	4.51184969673349	-0.622681065955867	0.187755585365086	0.572997129912273
Merged-chr4-141793589-4	chr4	141793091	141794091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015733)	promoter-TSS (NM_015733)	-21.0	NM_015733	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	7.69924842547703	7.78335234048963	7.63104890763563	7.81951427461403	7.95704748746767	7.580979511622	0.135833036746765	0.557692388147846	0.864302294338175
Merged-chr3-38561485-3	chr3	38561047	38562047	+	743.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-76731.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	3.53578544228569	3.54909411250333	3.49776442418708	3.58825484953827	3.61491497912014	3.67543215685046	0.338886057424723	0.541271490440793	0.856797425729538
Merged-chr8-46770116-4	chr8	46769611	46770611	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	30366.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.51126377034027	6.12893242947365	6.01763949792453	6.17058122844853	6.18240884475216	6.31488626208823	-0.0444014278294964	0.883596504058277	0.973400302870585
Merged-chr2-131253812-2	chr2	131253312	131254312	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-8196.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	4.82903928462519	4.52043687557959	4.73483832755819	4.51042843253031	4.64442390965396	4.23027119129192	-0.515843703717725	0.250772609124277	0.648153521953385
Merged-chr1-85614654-1	chr1	85614154	85615154	+	824.833313	f1_balb.idr	intron (NM_001013817, intron 3 of 16)	B2_Mm2|SINE|B2	-10763.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	3.89144604915138	3.87464338611467	3.72110579234013	3.34456753190226	3.39004101145927	4.15833351499785	-0.467506283304927	0.470944226392336	0.819784379107259
Merged-chr1-134063027-2	chr1	134062527	134063527	+	935.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16128.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	5.81212516361171	5.93765153377378	6.07226725824339	5.27780550696616	5.17387692644578	5.82833119541274	-0.919421694811261	0.0106962879777628	0.105377306423595
Merged-chr6-5583172-4	chr6	5582697	5583697	+	813.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86919.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	4.08132397251695	4.20780774664343	3.96759898539814	3.64365657471088	3.90495640116969	3.78040802918233	-0.960502089626473	0.0683102591283161	0.341854945769246
Merged-chr1-156672923-4	chr1	156672402	156673402	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 2 of 5)	RMER17C|LTR|ERVK	1437.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	5.7112088189748	5.76456652451428	5.44936787807521	5.32144624868342	5.3616035279182	5.29005703843602	-0.632678261647224	0.0589205741399499	0.314201316162123
Merged-chr10-60260309-4	chr10	60259816	60260816	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17312.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.35845738044272	7.23063313622969	7.44898164869727	7.85878718578693	7.68127768297284	7.36542960213	0.456706426515444	0.0670274800829416	0.338444235860271
Merged-chr8-70561398-3	chr8	70560855	70561855	+	788.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21680.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.98073273729381	6.48242808223343	5.33148558643754	5.41099922571531	4.92468132717126	4.88324984189345	-1.72963762465333	0.000101442489441918	0.00286976863560254
Merged-chr11-121237115-4	chr11	121236590	121237590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-146.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	7.64537986481562	7.68493259744024	7.49631371307835	7.71294309977181	7.79822649866817	7.6320496446039	0.150524585869532	0.49849137028741	0.833897130855037
Merged-chr2-164941234-4	chr2	164940719	164941719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-7000.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	4.98687913544543	4.54702409121606	4.47593083296342	5.29261800927261	5.07239209432998	4.64018295006163	0.741774671804949	0.103350145059017	0.428463201325997
Merged-chr11-117308965-2	chr11	117308465	117309465	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-22750.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.8134969549125	4.43451882863534	4.78730317405918	4.48648171268281	4.0018778424926	4.4202332448887	-0.940760401236117	0.0485172919402864	0.279456377389405
Merged-chr11-61267251-4	chr11	61266719	61267719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007437)	promoter-TSS (NM_007437)	-33.0	NM_007437	11671.0	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	7.59768884047231	8.1287328427089	7.89059367467017	7.54412136530857	7.55879291311282	7.49304575074397	-0.518482602478425	0.0364530965346503	0.234929886177968
Merged-chr1-120072273-4	chr1	120071798	120072798	+	926.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	1482.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.0857664577968	4.98284642827027	5.34150471807636	5.82189909154126	5.63685607217167	5.49528388084221	1.03570131903458	0.00312418507456904	0.0434493049782285
Merged-chr17-57275224-4	chr17	57274754	57275754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3846.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.19529061065995	7.03214188657921	7.05072075477445	6.90381952957686	7.15478440205535	6.8861215887053	-0.152790566725748	0.541436426903944	0.856839001867185
Merged-chr14-26487158-4	chr14	26486656	26487656	+	735.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	47468.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	4.69979886319942	4.55230590572244	4.42018377439978	4.84454898619834	4.74467865217043	4.74407780969373	0.490006091774625	0.234799013890385	0.630945615851348
Merged-chr8-117360372-2	chr8	117359872	117360872	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	11202.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.02424182853971	3.12875582582497	3.39460895289279	3.28673689815542	2.92611852731849	3.25009914748383	-0.109529308553503	0.871810866475098	0.970261003150518
Merged-chr1-24099923-2	chr1	24099423	24100423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026604, intron 1 of 20)	CpG	418.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	5.04417480501713	4.78950153070976	4.49323315972441	4.70862991786763	4.42453305190786	4.37398123913193	-0.690409673317673	0.124183787551603	0.471570153735589
Merged-chr6-29245945-4	chr6	29245444	29246444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26544.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	7.32320302534289	7.4006187488893	6.9057405307653	6.7847628194573	6.41494135542993	6.32856404638185	-1.08959390250732	0.000179191262448647	0.00457506798583216
Merged-chr15-6522960-4	chr15	6522482	6523482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56865.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.54377697652921	6.07320676492871	6.4006781350377	6.63116816305307	6.22072963314576	6.17851571705109	0.0161770629729986	0.958921826215132	0.990174309444982
Merged-chr6-67168918-3	chr6	67168418	67169418	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-98061.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	3.16729586512242	3.33790822173893	3.34753691065354	3.23340823877056	3.2636520928338	3.52179682918513	0.219424711900099	0.723630802234843	0.929080851011554
Merged-chr15-58076302-1	chr15	58075802	58076802	+	1000.0	f0_c57.idr	5' UTR (NM_001042438, exon 1 of 5)	5' UTR (NM_001042438, exon 1 of 5)	206.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	6.53995785464131	6.79257088761608	6.61698211542066	6.64326622502648	6.82407258721726	6.53669527507361	0.0401115802578989	0.881074522601124	0.97262624933271
Merged-chr6-121184829-5	chr6	121184184	121185184	+	889.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028730, intron 1 of 4)	intron (NM_028730, intron 1 of 4)	1017.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	3.90190815186698	4.28138239358161	4.12572200397405	3.97818538900187	4.13996543801414	4.1002057417314	-0.109130310172463	0.82627172493089	0.959130347937145
Merged-chr9-53633639-4	chr9	53633153	53634153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161618, intron 9 of 17)	intron (NM_001161618, intron 9 of 17)	-23303.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	7.07496251351542	7.23447462534094	6.92675065890787	7.19644424479819	7.52210332071403	7.14890233191108	0.325272553184188	0.208888327087695	0.59999240292426
Merged-chr16-91346871-2	chr16	91346371	91347371	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-25912.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.42150185746356	4.18178717797204	4.23877836132596	4.21858647985716	4.18958300191398	4.2612085817062	-0.179966670281567	0.695691334858146	0.919291538728398
Merged-chr5-45497739-4	chr5	45497229	45498229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4355.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	4.92099168996873	4.80347229326358	5.07309380718442	4.72849517053869	4.72499081954493	4.89912592719281	-0.335406092990484	0.391954359810789	0.770782330002482
Merged-chr2-129367775-1	chr2	129367275	129368275	+	762.0	f1_balb.idr	intron (NM_008361, intron 4 of 6)	intron (NM_008361, intron 4 of 6)	-2127.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	4.22007798623968	4.33230993625372	4.93053513503135	4.17942937165138	4.14764600351165	4.66217956147505	-0.454461627775823	0.381026615218865	0.762958584368558
Merged-chr6-86579463-4	chr6	86578965	86579965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48709.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	5.67321440482258	5.2560318216793	5.29699868917435	5.72197193212869	5.42569245520947	5.57382117799812	0.278826403594298	0.43205070737055	0.797216457194801
Merged-chr18-68060111-2	chr18	68059611	68060611	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	(TTA)n|Simple_repeat|Simple_repeat	126938.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.11374217556569	3.76094108769638	3.58132449800599	3.70480388716976	3.37326485733212	3.59718551806264	-0.951994839632863	0.109333793620915	0.441790725633425
Merged-chr11-69012036-2	chr11	69011536	69012536	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-3576.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	5.89830579665618	5.8465234044204	5.76776730629705	6.36208231137322	6.41898643228241	6.12435433836752	0.809371976963663	0.00564815090772243	0.0667667766344322
Merged-chr1-64738908-3	chr1	64738417	64739417	+	794.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	3.12611647466669	3.25396451922522	3.14590132524726	3.13648136455181	2.84290971129651	3.27430694776968	-0.382235058095774	0.575537847649048	0.871222406257859
Merged-chr7-25813757-4	chr7	25813207	25814207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028775, intron 2 of 8)	L2c|LINE|L2	2823.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	2.65384391636464	2.51348284077906	2.61792326432538	2.86995973038215	2.44111310828021	2.75571315242768	0.565480897252795	0.477083074441399	1
Merged-chr5-113910227-4	chr5	113909721	113910721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1515.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	5.87812896257034	5.76233896775474	6.1559946758475	5.56565371590181	5.35194245726436	5.75606630792184	-0.68913679898632	0.0399857926957763	0.248879421608218
Merged-chr8-85559356-4	chr8	85558867	85559867	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4096.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	5.42799151071548	5.30178008023753	5.50997080200644	5.88914731966414	6.06398863368365	5.76603673787029	0.944585221931869	0.00324691764806326	0.0447429516209443
Merged-chr10-80509742-4	chr10	80509249	80510249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	14843.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	5.75225870160301	5.36084462476189	4.86880042167614	5.53525117845493	5.36585426089795	5.13809717469114	-0.0566842060491439	0.892415055994085	0.975116176795523
Merged-chr14-60284903-2	chr14	60284403	60285403	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 4 of 13)	intron (NM_144843, intron 4 of 13)	19698.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	6.18853629484244	6.35781337937182	6.56418862735185	6.69516696708735	7.03528961292484	6.82685921442275	0.787409466145038	0.0046300133013832	0.0580726781401106
Merged-chr8-40308572-1	chr8	40308072	40309072	+	1000.0	f1_c57bl6.idr	promoter-TSS (NR_106126)	promoter-TSS (NR_106126)	521.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	5.78322239431614	5.74750183951426	5.78007833463756	6.30231280412612	5.6926166004618	6.24190876278687	0.575821433731195	0.0858577718046929	0.388065922920783
Merged-chr17-35164988-4	chr17	35164475	35165475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-98.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	8.52439268515102	8.29274958145405	7.96108632265217	8.16393579016578	8.34802502931013	8.02479333867707	-0.134967564636822	0.587058915157222	0.875769926947203
Merged-chr16-91021264-4	chr16	91020774	91021774	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-9966.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	6.5640620005657	6.19933295781831	6.20613761975499	6.35810238144416	6.4441961431375	6.28751361899497	0.0469056565199575	0.870849845033427	0.970222087171093
Merged-chr18-61211021-4	chr18	61210536	61211536	+	971.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	560.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	7.10503753784104	7.36672589886502	7.31740229613029	7.41074856554969	7.62566387825871	7.10742246477892	0.212305724292077	0.416963257564511	0.787757906017933
Merged-chr15-59739338-4	chr15	59738821	59739821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55638.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.77580627596874	4.69184541645296	4.29254688920295	4.7952149322036	4.5426281537274	4.63604737385912	0.10617933486452	0.810419855797885	0.955045521890034
Merged-chr16-38403845-4	chr16	38403333	38404333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	29312.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	4.5201912376188	4.42606712040306	4.26978501099794	4.07837792866013	4.1993571531774	4.29240500282128	-0.604738717155664	0.187630563784579	0.572811133759911
Merged-chr5-125137275-4	chr5	125136772	125137772	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	41942.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	5.16089695763975	4.88792634969995	4.94539018394233	4.31765131528226	4.31209469892842	4.20820982219878	-1.74959616597439	5.58852912912639e-05	0.00173123727392535
Merged-chr17-5598728-2	chr17	5598228	5599228	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	B4A|SINE|B4	106128.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.19962873215952	3.92450766134804	3.85418335140255	3.69734511893423	3.49726334423575	3.87368893690312	-1.02404340838756	0.0635770875964458	0.328619847479504
Merged-chr17-47739535-2	chr17	47739035	47740035	+	938.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	1604.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.68925846619284	3.62359358498445	3.66273817900042	3.98401049882956	3.7506506612223	3.62354588332565	0.462507728103937	0.396946187953093	0.773848546396843
Merged-chr9-114770430-4	chr9	114769921	114770921	+	907.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	11572.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.41753819004351	3.49281698157067	3.51775622169543	3.62712021455131	3.43930592640366	3.69138895715656	0.395548412931508	0.489537131612051	0.829739482756292
Merged-chr4-9612035-4	chr4	9611536	9612536	+	960.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 3 of 22)	intron (NM_001290367, intron 3 of 22)	31681.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.07181554250699	3.73375164516274	3.80550864971044	4.54198345991873	4.43340025286339	4.37573149037298	1.6060192832248	0.00136582068823507	0.0230101655854756
Merged-chr11-26600850-4	chr11	26600356	26601356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6936.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.2429065931587	6.26568332510941	6.26217287697116	6.64492512550799	6.69965350820554	6.14836431005733	0.452704477560936	0.125354215650639	0.47381091922678
Merged-chr18-20745051-3	chr18	20744567	20745567	+	825.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	1337.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.66521547963064	7.05944958810664	6.69960784534308	7.16954775324973	7.1526977634309	6.98573888088642	0.428692677805823	0.105653315914108	0.433764288115161
Merged-chr9-25251289-2	chr9	25250789	25251789	+	784.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359736)	promoter-TSS (NM_001359736)	-702.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	6.46513537836509	6.80176556114842	6.64263684686801	6.73443482944119	6.73132467534899	6.47288358392108	0.0218729187243411	0.936180513360315	0.986037792257163
Merged-chr5-101970128-5	chr5	101969591	101970591	+	645.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	99830.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.21110676869378	5.3005672976011	5.3684642350128	5.51783825274627	5.58541942621565	5.68203080724213	0.585590294274143	0.0767877435016537	0.365126839321424
Merged-chr2-132710694-4	chr2	132710176	132711176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	20078.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	4.22533942616123	3.97857482997871	3.88286859238445	3.5033295029122	3.43298639392518	3.45349654007213	-2.00332654109715	0.00049740171718427	0.0104536649144207
Merged-chr19-55876676-4	chr19	55876192	55877192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-18629.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.25978832503286	5.5104076086122	5.25501569701979	5.18266922430531	5.22152232217106	5.3188137374219	-0.230465257202665	0.510613180657895	0.840995675696401
Merged-chr4-62641054-4	chr4	62640438	62641438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 17 of 19)	intron (NM_019492, intron 17 of 19)	21266.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.02399481847636	5.10757871927337	4.897868149382	4.98920784282448	5.19607794540338	4.58278484398362	-0.113649024566171	0.784174973720189	0.947500634768162
Merged-chr19-53479666-3	chr19	53479156	53480156	+	865.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-14860.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	2.78159505914759	3.02615048986469	3.11821978346897	2.76825311989355	2.75285319990987	2.90329001591284	-0.857705387669406	0.234359770950045	0.630452522567377
Merged-chr5-16556579-2	chr5	16556079	16557079	+	654.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289458, intron 2 of 18)	intron (NM_001289458, intron 2 of 18)	2678.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.1701429125091	3.22351227291972	3.45584043151496	3.00297305671713	3.19759139407777	3.08397759968932	-0.768847608328542	0.243021873745206	0.640261028736697
Merged-chr2-120291797-4	chr2	120291297	120292297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2728.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	5.87804334943182	5.73380685816814	5.51631865342875	5.6069816319494	6.24118139101728	5.77930444976042	0.343545941299017	0.332527659814769	0.723636403333698
Merged-chr13-29983164-3	chr13	29982681	29983681	+	596.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	1210.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	4.1649699936641	4.14949952349415	4.39731335755001	4.29817396316578	4.05101973636877	4.33852196694792	-0.0195214624556352	0.967109679279039	0.992479541792373
Merged-chr6-88306884-3	chr6	88306397	88307397	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84629.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	4.49951120261057	4.30949193192487	4.89653111608415	4.31245549512661	4.40255592758036	4.64646387829636	-0.3093203126652	0.507667781775768	0.839334382172908
Merged-chr15-77805869-4	chr15	77805448	77806448	+	935.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	36227.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	5.25827762640095	5.49167350187286	5.39565121048258	5.27102879927225	5.1946670538818	5.67441024086536	-0.00492277420799971	0.989159338460396	0.99753218656301
Merged-chr7-141048981-4	chr7	141048482	141049482	+	808.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-12292.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	4.28225107501882	3.86010923465017	4.2544200928574	4.01088324197483	3.89087396689988	4.5571148931014	0.0930214346776784	0.864287585622066	0.968269312109804
Merged-chr2-45114725-4	chr2	45114204	45115204	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110572)	TTS (NR_110572)	-1425.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.8843336887881	6.98365589161414	7.0758323180409	7.07125933199759	7.33416580018341	7.28759331996525	0.391670650373426	0.109599095154134	0.442394562413176
Merged-chr11-109480043-4	chr11	109479556	109480556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5836.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	5.39588025785022	5.00198715363611	4.92173389914505	5.41829951283086	4.91375702040981	4.78446987300229	-0.117538967581685	0.783014221377497	0.9468504131997
Merged-chr10-99191848-2	chr10	99191348	99192348	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	L1MB7|LINE|L1	-71383.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.05933833416744	2.88787009271264	2.98531472791952	3.13958015469536	3.18275462625584	3.23398955216373	0.922442372234368	0.162395802077284	0.535842287006085
Merged-chr11-69682950-4	chr11	69682450	69683450	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-866.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	6.70016507882526	6.5674260216709	6.2550677475992	6.62577480795104	6.68393614673079	6.51370387745785	0.130762501469734	0.638890223203337	0.897847437626511
Merged-chr9-103181186-4	chr9	103180650	103181650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	20915.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	4.60246093000549	4.33697755103299	4.39501120937393	4.37465900136523	4.74707305527306	4.89059263062222	0.564033427111765	0.209980616016265	0.60193932923403
Merged-chr5-110102099-4	chr5	110101600	110102600	+	967.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 4 of 6)	intron (NM_001281812, intron 4 of 6)	1541.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	3.67495497489631	3.74731144708107	3.75077722477461	3.93835692966631	3.48774256214913	3.6078367696499	-0.10831294308295	0.848264996620485	0.964346292474551
Merged-chr19-16139386-2	chr19	16138886	16139886	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	6555.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	6.68300120592929	6.99583220723324	6.78379387411292	6.64777787068001	6.70537969366151	6.5456060462099	-0.299503707259881	0.25501786462882	0.652024436103169
Merged-chr8-72485986-3	chr8	72485492	72486492	+	971.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	6622.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	3.99877822301646	4.21159502769118	4.27973314932462	4.5791001127702	4.63442545509932	5.05148444778916	1.51684815361621	0.00112588545268419	0.0197392913499675
Merged-chr3-152212168-3	chr3	152211626	152212626	+	751.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355374, intron 1 of 19)	intron (NM_001355374, intron 1 of 19)	1704.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	4.98855163310803	4.89950251186611	4.6562046810633	4.92886860448048	5.07161689126684	4.84726230836746	0.207498381977221	0.598638757795827	0.880808927175713
Merged-chr5-134639472-4	chr5	134638994	134639994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-85.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	7.91744765434472	8.21325708433324	7.93206744329708	7.80323837818118	7.77637240092031	7.79392116384563	-0.344517976936719	0.122672602194079	0.468613620575012
Merged-chr6-38337438-3	chr6	38336930	38337930	+	701.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 2 of 8)	B2_Mm2|SINE|B2	17173.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	4.5953769793752	4.50386215612122	4.30695682259786	4.76212021046961	4.93896016810656	4.76886090487625	0.821552225037003	0.0509055553016129	0.28742776198541
Merged-chr10-100015796-4	chr10	100015285	100016285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013598)	promoter-TSS (NM_013598)	-36.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	5.020744287172	4.96512425449914	4.76224527488543	4.57616545424917	4.49565368124663	4.62620926855498	-0.853646936750656	0.0342090206817292	0.226320515788967
Merged-chr1-131548730-4	chr1	131548216	131549216	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20813.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	5.29354398129226	5.38891444673748	5.19378836582743	5.48901283820246	5.66103764886076	5.50933589748001	0.504646694376514	0.133620667412062	0.48882429079019
Merged-chr19-43674428-2	chr19	43673928	43674928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045645)	promoter-TSS (NR_045645)	453.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	6.79035836337331	6.98422268161468	7.07867596271212	7.31854750041933	7.09339256063783	7.20964642891008	0.388899696286735	0.117646393797615	0.457884893358528
Merged-chr19-29393549-4	chr19	29393040	29394040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17379.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.37474579118578	6.18751760237597	5.97580385791606	6.56381386619417	6.56045364720798	6.08682364494372	0.386792056679529	0.211604861045078	0.603959018894758
Merged-chr5-5560384-2	chr5	5559884	5560884	+	828.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-843.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	3.82001346387662	3.74699273611016	3.77454826817404	3.62352702807935	3.63975826544692	3.79349362866493	-0.328905964206003	0.537147784211949	0.854311531235259
Merged-chr17-8225960-4	chr17	8225512	8226512	+	876.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10031.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	5.26171758197185	4.94613940176517	4.95423531464169	4.62386855020137	4.61477498411461	4.87394021756656	-0.820855057580338	0.0405075974223925	0.250766770799973
Merged-chr8-70759207-4	chr8	70758741	70759741	+	801.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009001)	TTS (NM_009001)	1680.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	3.61315213690123	3.44388496063703	3.69944974871701	3.60595677932364	3.0639910023677	3.56497901086021	-0.565774847282444	0.382614092642544	0.764107846408276
Merged-chr11-70789479-4	chr11	70788972	70789972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23089.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.89923846482401	6.84579833347369	6.86648391891251	6.77287242601421	6.98743341268233	7.05976302662935	0.112354691191224	0.65250996607675	0.902986290245403
Merged-chr5-34543890-2	chr5	34543390	34544390	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	525.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.02980399979281	5.93179093858157	6.14760495003025	6.26621983190109	6.00432765174654	6.30690836226301	0.268893474020213	0.362784085667375	0.748302880520846
Merged-chr3-79163317-2	chr3	79162817	79163817	+	705.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17442.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.7534582233813	4.57291383452396	4.75539252218583	4.58628772327576	4.40955094764582	4.58691951891779	-0.410738692782635	0.325620899548538	0.718159390122652
Merged-chr4-102607820-2	chr4	102607321	102608321	+	728.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177980)	TTS (NM_001177980)	17978.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.00852714648704	5.96329517736132	5.90085968515583	5.4335865572366	5.50367217947041	5.79294079038043	-0.701204154444275	0.0264975070073746	0.193459812193228
Merged-chr6-32183920-4	chr6	32183410	32184410	+	891.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	133622.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	5.76983108046072	5.96905438712987	5.56982896758806	5.28328280409877	5.09570689475553	5.29651936799738	-1.09047760013416	0.00144094089757878	0.0239911605669847
Merged-chr17-87262024-2	chr17	87261524	87262524	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	ORR1A2|LTR|ERVL-MaLR	3923.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.52129832492389	2.51956671751498	2.77377185727935	2.43327314657311	2.61406539357617	2.78767198501342	0.0603371053070496	0.939416990294391	1
Merged-chr18-32391596-3	chr18	32391057	32392057	+	884.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-13273.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	2.95005579554609	3.0098462083639	2.98939287229974	2.94390293662845	2.73315948412958	3.00276034499433	-0.441285975192655	0.527121678966044	0.849822081772749
Merged-chr5-8346055-2	chr5	8345555	8346555	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	22105.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	5.51208232867663	5.58430707229265	5.51160261991736	5.16085247316243	5.20891692840069	5.33820987674209	-0.599827277467513	0.0739100392000484	0.357428021722517
Merged-chr10-85388485-2	chr10	85387985	85388985	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028709, intron 1 of 16)	CpG	1671.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	2.94699656778618	2.87004427314901	3.36501613282467	4.11973682206885	3.82208036497124	3.82331852465583	3.55721978489399	0.00567120719321937	0.0669252316172737
Merged-chr1-97673031-4	chr1	97672531	97673531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11013.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.97420487175831	4.88035224673767	4.67045772553011	4.52577913729269	4.30721966052286	4.5717017606718	-0.938677357453623	0.0261534123900218	0.192011630221425
Merged-chr9-95674690-3	chr9	95674166	95675166	+	688.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 3 of 8)	MTD|LTR|ERVL-MaLR	37038.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.98434250464897	4.08545975471527	4.2969335466416	4.4352351270515	4.29840268809226	4.52866095031867	0.808597798241637	0.0831316318867135	0.381505377849687
Merged-chr11-109247089-4	chr11	109246590	109247590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165934, intron 12 of 16)	L1MB8|LINE|L1	51091.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	5.59415575393334	5.45464520704197	5.60427536475371	5.75984193757955	5.90860512482983	5.72061034671067	0.474945085846065	0.131874710109012	0.485639782197417
Merged-chr14-30826732-4	chr14	30826241	30827241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1147.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	5.14975143336974	4.93593632678885	5.09590998525221	5.25621805961458	5.182453915297	5.49359370433096	0.504839874872201	0.166003531249081	0.541109862183596
Merged-chr17-29437409-4	chr17	29436906	29437906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-53639.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	7.36980561733857	7.35639588839035	6.87771004766305	7.5220075820513	8.00516618358616	7.18168179193919	0.582269495132817	0.0605081365896846	0.318564324858752
Merged-chr2-150875617-3	chr2	150875079	150876079	+	870.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	RLTR25B|LTR|ERVK	29152.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.4552034152047	5.50519410032494	5.54610103586062	5.66531511314831	5.48924532327832	5.36954994442303	0.0343493059326693	0.917145553435707	0.9815299454321
Merged-chr5-122059748-4	chr5	122059177	122060177	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9826.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	4.44593997930848	4.42265471598656	4.02016395305471	4.41945401349755	4.41298451975637	4.03815478074146	-0.0248656095136341	0.960142021828224	0.990335445597503
Merged-chr10-128233930-2	chr10	128233430	128234430	+	659.275024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164081, intron 1 of 28)	intron (NM_001164081, intron 1 of 28)	1867.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	2.62950855949534	2.52179829476318	2.81306834367586	2.62387432246381	2.51029448393067	2.82711098847249	-0.00436832347581558	0.995505873966503	0.998961028701257
Merged-chr9-40808725-2	chr9	40808225	40809225	+	874.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7452.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.59228381850069	6.02175104911017	5.51230037346807	6.40977870598618	6.40406151312759	6.37327076432712	1.11378420690943	0.000514281629032238	0.0107168409187364
Merged-chr4-98436988-4	chr4	98436494	98437494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25967.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	6.01967570810415	6.0384359122765	5.92670464528076	6.09293630807664	6.26976680705278	5.47248520481779	0.0131463693665148	0.969963924556058	0.993289586174763
Merged-chr9-90109574-4	chr9	90109088	90110088	+	964.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	5232.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	6.3707296383915	6.56632142242475	6.20196455752126	6.77794793430881	6.87843055413222	6.42979557794276	0.514379129310028	0.0762021083705037	0.363369438179621
Merged-chr18-32837233-4	chr18	32836754	32837754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	29.0	NM_144863	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	7.4120697259495	7.56380546745025	7.27345328043064	7.40734274871801	7.17557456956814	6.91854184867218	-0.352168347718051	0.17435378270878	0.553498231280217
Merged-chr19-53825040-3	chr19	53824553	53825553	+	720.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 5 of 13)	intron (NM_001170847, intron 5 of 13)	-67178.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.00390631135375	3.01024311196955	3.17254895506495	3.61612047844981	4.25710219648057	3.9684189909384	3.99622555389733	2.70414545741812e-07	1.7068488844996e-05
Merged-chr16-12032679-4	chr16	12032188	12033188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	48575.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	3.38367316029408	3.50922942313467	3.77712670188201	3.8902990678875	3.87229009487248	3.58247450644739	0.802977578000882	0.163160084465829	0.536864295643496
Merged-chr9-71951434-4	chr9	71950924	71951924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-55328.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	7.03666490765858	7.14653908731191	6.87181466056114	7.19547488545607	7.47188351914757	6.97465105893258	0.319117416480332	0.230161400418321	0.626001693394165
Merged-chr16-57557546-2	chr16	57556971	57557971	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	8229.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.35679646963014	6.39231412981255	6.33630203606498	6.48634484065555	6.55552707099708	6.33693260569745	0.174038595826806	0.516209864957837	0.844051513295388
Merged-chr2-11778510-4	chr2	11778004	11779004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	751.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	6.68314066909087	6.83750436761555	7.00571244395824	6.87543681217731	7.10301696188234	6.77925973447773	0.144705464506589	0.583852067541882	0.874249362702675
Merged-chr8-11476956-4	chr8	11476452	11477452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	-977.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.85847571766119	9.19226537054051	8.36397832251035	8.77352789675908	9.13897149311467	8.3810635330207	-0.064783477384294	0.830246678384045	0.960219727001139
Merged-chr1-125562109-2	chr1	125561629	125562629	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028787, intron 1 of 15)	ID_B1|SINE|B4	1127.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	4.15478218863773	4.37588462688723	3.85218203758694	4.28603298168948	4.43415909790083	4.18914646883477	0.420119223112153	0.405936819452379	0.780439975167702
Merged-chr9-56928316-4	chr9	56927785	56928785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175483)	promoter-TSS (NM_175483)	86.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	5.68902905186838	5.95936450553978	5.85910095245315	5.21130363963801	4.73919140422108	5.2328884697457	-1.5132551953026	3.9220175033842e-05	0.00128939050066909
Merged-chr2-79695434-3	chr2	79694955	79695955	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12325.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	4.35976324028158	4.12184547360943	4.1247687614621	4.15496071778363	4.16355156471348	3.99412685693618	-0.276232603264088	0.565547165635152	0.866815789886591
Merged-chr5-96993354-4	chr5	96992819	96993819	+	887.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4370.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.34661048718568	4.14451703151835	4.28469056247648	4.00958568897796	4.23405617025299	4.12301844549773	-0.358506866271298	0.4498798178078	0.808013574003465
Merged-chr2-59611960-4	chr2	59611447	59612447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198294)	promoter-TSS (NM_198294)	-95.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	5.64464181454993	5.55345386755374	5.19371809582445	5.45942743192809	5.24293394384479	5.07647613287578	-0.418988501759721	0.253803017547596	0.651117231535132
Merged-chr11-116429089-3	chr11	116428589	116429589	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5005.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	5.26676608077688	5.35542250608725	5.40148787474155	5.62925292334918	5.9126989059007	5.84198202732361	0.871699458701051	0.00757286524804663	0.0827451154009769
Merged-chr11-16637877-4	chr11	16637366	16638366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114337.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	5.79157911212932	6.16437098555749	6.07449615381057	5.90403015741104	5.96647454454977	6.09192421063266	-0.0580362819745412	0.849596865874541	0.964686793473289
Merged-chr8-14885942-3	chr8	14885409	14886409	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2627.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.45366010546134	3.69495637020493	3.66268630301567	3.92805189179857	3.71321115483356	3.88561605325091	0.781529156902917	0.155010116571947	0.524397535360164
Merged-chr6-72151049-2	chr6	72150549	72151549	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	GA-rich|Low_complexity|Low_complexity	-27852.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.43757393928142	4.20882800254035	4.54936703257401	4.31392655326025	4.42078674884757	4.49518175861712	0.0293623600840789	0.947782753501034	0.988008807662239
Merged-chr12-34432010-4	chr12	34431510	34432510	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 6 of 27)	intron (NM_001271386, intron 6 of 27)	96879.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.61095887289982	4.1871388337447	4.43436224623691	3.99472690645708	4.04779890483824	4.09784649109551	-1.03712786779464	0.0318397863189283	0.216377404445066
Merged-chr4-133663018-2	chr4	133662562	133663562	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145956, intron 2 of 2)	intron (NM_001145956, intron 2 of 2)	9585.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	5.79072609582967	5.56146901348641	6.01120741219513	3.95809025598416	4.03273855804414	4.24407324413699	-4.31346555184557	1.14353744462725e-16	4.4051603561363e-14
Merged-chr9-25569541-2	chr9	25569041	25570041	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	RMER17C2|LTR|ERVK	87944.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.78951809072715	4.51037985038002	4.44289180856747	4.55659786101443	4.31198806029773	4.75260758954426	-0.132142863684922	0.768607567442065	0.942871018290895
Merged-chr6-108146626-4	chr6	108146131	108147131	+	908.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 6 of 8)	intron (NM_145937, intron 6 of 8)	38952.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	3.8931655054047	3.88585345131134	3.83056728429479	3.90598929598217	3.85244113017183	3.9002869759848	0.0388543009571859	0.938734778160267	0.986515091506254
Merged-chr16-93029604-2	chr16	93029104	93030104	+	950.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203530.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.29631630415286	5.31780404981758	5.08298642992416	4.90901877471592	4.92528733339845	4.72231449054566	-0.806737839486919	0.0324025591039354	0.218790240843971
Merged-chr16-97537185-1	chr16	97536685	97537685	+	541.0	f1_balb.idr	intron (NM_013606, intron 1 of 13)	intron (NM_013606, intron 1 of 13)	1102.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	4.70002511047121	5.11786612506352	4.97430317705047	5.09179327830706	4.66393079628451	4.93204836189021	-0.0894579364963641	0.828878474577505	0.959925957873127
Merged-chr18-6765075-4	chr18	6764592	6765592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278447)	promoter-TSS (NM_001278447)	-75.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	7.67293351459528	8.05235311923987	7.32299081622718	7.76673017099651	7.64535482670995	7.55563739712768	-0.0974307404646939	0.720907508741134	0.928324696220711
Merged-chr10-80142991-3	chr10	80142456	80143456	+	815.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 1 of 2)	intron (NM_001347092, intron 1 of 2)	641.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	6.16110016965246	5.98087971347564	5.82830908938304	5.72325527121453	5.92572694349206	6.20370028149274	-0.0810722203100524	0.799717374324246	0.952272292892925
Merged-chr4-6444941-2	chr4	6444439	6445439	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	(TG)n|Simple_repeat|Simple_repeat	9332.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	3.54661539498826	3.59424898640061	3.53197633485797	3.40193865422841	3.4893713188157	3.31848902606851	-0.547884128116398	0.348176902761983	0.736087868121677
Merged-chr4-63424248-4	chr4	63423743	63424743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	intron (NM_001008792, intron 7 of 11)	-20798.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.0915737623869	3.90733523985113	3.85105756890618	4.03852933025817	4.00468014940072	3.97250357223229	0.141594806383269	0.776818028350139	0.944892922631445
Merged-chr2-50981305-3	chr2	50980745	50981745	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	71561.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.25388315045035	3.1657888554001	3.07707454280382	2.84183705529041	2.84172118223488	3.09075528566982	-1.16120793291066	0.0931101713348164	0.40648012258276
Merged-chr6-34016076-4	chr6	34015540	34016540	+	836.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13408.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.72758924065109	5.01183511096025	5.14587836925778	5.03383476138017	5.04802482450245	5.59747577624265	0.573962941305541	0.162371136244362	0.535842287006085
Merged-chr5-43799740-4	chr5	43799244	43800244	+	885.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17595.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.99751111561697	3.11373958918125	3.28922427007966	2.88797559966277	2.99614933347245	2.96335107303996	-0.834560646352735	0.221153771631572	0.615649482432915
Merged-chr17-80252922-1	chr17	80252422	80253422	+	689.0	f0_balb.idr	intron (NM_198942, intron 15 of 22)	intron (NM_198942, intron 15 of 22)	28471.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	3.89400058659361	4.0535280019123	3.97266487574629	3.54617703103763	3.47282469625552	3.89897358825583	-1.10364093604922	0.0470722513445217	0.274688820385368
Merged-chr9-89199278-4	chr9	89198782	89199782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	9.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	6.86026410704912	6.5911624596376	6.00903156785072	7.15282899146668	7.01491112392067	6.01832209680708	0.446627461000367	0.505743984431855	0.838177729332582
Merged-chr5-38402462-4	chr5	38401961	38402961	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012363, intron 6 of 11)	ORR1D2|LTR|ERVL-MaLR	58072.0	NR_046191	78172.0	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA	2.28493027185474	2.21796741103727	2.40131106584198	2.56814916761202	2.45059608093645	2.90076109169796	2.24871938931794	0.0114742185043149	1
Merged-chr2-25574885-4	chr2	25574348	25575348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	23.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	6.87877694574572	6.96530148552312	6.82442677752817	7.0259390952106	6.68007049854903	6.39302889655411	-0.246790793435577	0.387015456681403	0.767390671040563
Merged-chr2-164867376-4	chr2	164866873	164867873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9665.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	7.65688723158967	7.40842400954627	7.68735403139206	7.61154231078064	7.95806451527645	7.37378362176089	0.135721157558368	0.605674762353804	0.883581756351046
Merged-chr17-28177305-4	chr17	28176804	28177804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172617)	promoter-TSS (NM_172617)	108.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	7.06954726592911	7.2003740823392	6.84728866449205	6.96221462693338	6.59030067566447	6.92031898557003	-0.347904527377763	0.196876366284431	0.584754678471847
Merged-chr9-32493825-4	chr9	32493315	32494315	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	47637.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.9768614346104	3.63780834385207	3.75636467917223	3.52318884573978	3.57977299192599	3.77532569349714	-0.588498575001944	0.29226096448701	0.68951252554772
Merged-chr11-31818238-3	chr11	31817730	31818730	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102310, exon 4 of 4)	non-coding (NR_102310, exon 4 of 4)	6317.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.60791112405271	3.75488318565029	3.75314782789695	3.03915727144452	2.97819413297755	3.16876148547452	-2.89327538518686	3.53922239729071e-05	0.00118293358093388
Merged-chr2-91089230-4	chr2	91088753	91089753	+	972.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7425.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.0885872256189	6.9654274889398	7.24411500440881	7.00568800479877	7.0603565284927	7.12465840968711	-0.0533850977807007	0.826321037370532	0.959130347937145
Merged-chr13-47244387-2	chr13	47243869	47244869	+	642.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001170643, exon 8 of 8)	exon (NM_001170643, exon 8 of 8)	50366.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	3.11906827970315	3.16568634438925	3.39167635536333	2.93149516503485	2.67130290830095	2.96048624015665	-1.81388638177217	0.013715687044267	0.125069220847341
Merged-chr3-84582755-4	chr3	84582238	84583238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081093)	promoter-TSS (NM_001081093)	-113.0	NM_001081093	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	5.97148845460563	6.07566972219039	6.00689140066325	5.76606758248437	6.00204333416924	5.85325084751447	-0.237062828546497	0.427097674937256	0.794036184519232
Merged-chr2-90489116-4	chr2	90488616	90489616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-9942.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.0362921130164	6.89993702470846	7.06447094565243	7.19587168630946	7.59271053638328	7.30386301473062	0.574440484111457	0.0227556281104042	0.175911241955374
Merged-chr1-36089651-4	chr1	36089150	36090150	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21250.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.14799847653506	5.9514021179143	6.09069792188555	5.59648500633103	5.74444051827868	5.85593647779518	-0.587448016060975	0.0536951255862041	0.297065426181973
Merged-chr11-70166566-4	chr11	70166064	70167064	+	965.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010796)	promoter-TSS (NM_010796)	-59.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	5.01391704864848	4.78205142529842	4.77722957071735	4.4630983528852	4.72630012178029	4.46620619918321	-0.69144156368485	0.10131289430146	0.424516230689691
Merged-chr9-104972997-4	chr9	104972483	104973483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 7 of 15)	intron (NM_028719, intron 7 of 15)	-80285.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	4.80006432515843	4.88811637304611	4.80730908641298	4.68909182023325	4.38469197762522	4.59686149241724	-0.657477851969851	0.110562117822931	0.444277427913769
Merged-chr5-113647379-4	chr5	113646882	113647882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	3008.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.56597233131136	7.56934406432058	7.45599262608453	7.62586873501127	7.73436778008469	7.48156588970368	0.130762581414865	0.563564130703069	0.865992481769395
Merged-chr4-47322591-4	chr4	47322113	47323113	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30609.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.43832579504278	3.42339779384776	3.3889650441478	3.39467974136465	3.25625741469657	3.28856199490209	-0.411448804254259	0.49110897073622	0.830387418199578
Merged-chr13-100697646-3	chr13	100697129	100698129	+	870.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183115)	TTS (NM_183115)	28148.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	4.97459669163507	5.00770178972876	4.8733370803485	5.61916597333587	5.70799277897241	5.46030202537539	1.29568385532095	0.000225892881382336	0.00552663771657202
Merged-chr12-40038068-4	chr12	40037541	40038541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-54.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	7.46572949405824	7.36042931605933	6.55553136684776	7.02662237941739	6.63428966832327	6.670488073075	-0.618419474071947	0.0602144854362172	0.317728010996667
Merged-chr9-94670489-4	chr9	94670025	94671025	+	907.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	633.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	6.54200172213317	6.55857306621576	6.37915122642629	6.55029193642601	6.38937300081408	6.38079678846332	-0.0952484301240634	0.722046430664112	0.928665377061702
Merged-chr4-134128770-4	chr4	134128290	134129290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-37.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	6.37829069936745	6.32563780431626	6.67539088118555	6.83698451884749	6.82202545830178	6.58615434407395	0.479860252389173	0.0794224277799225	0.372650353598274
Merged-chr19-41364709-4	chr19	41364199	41365199	+	866.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	20371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.92243344999053	5.367395598691	5.14710870660731	5.6490942219994	5.3673428546709	5.21234030564436	0.525315456822267	0.166094484407121	0.541194161193161
Merged-chr12-73632962-4	chr12	73632455	73633455	+	967.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	48159.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.130315321123	4.9050751614835	5.40981393216435	4.71785184744679	4.67193286508802	5.15592451976522	-0.648872279463614	0.120350892334696	0.463897579533301
Merged-chr2-129066550-3	chr2	129066040	129067040	+	930.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 1 of 6)	intron (NM_027192, intron 1 of 6)	593.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	5.32529252403692	5.23451306215779	5.34335831248717	4.84606094123969	4.95304796084248	4.74029527992704	-0.930072579012556	0.0125490043680698	0.117959506942878
Merged-chr3-142530226-4	chr3	142529730	142530730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-106.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	6.43194411526588	6.31295649875236	6.61116712129988	6.39765179396616	6.50201897587687	6.41036033201554	-0.0138307500766534	0.959455985763945	0.990200345348868
Merged-chr18-9554032-1	chr18	9553532	9554532	+	861.0	f1_c57bl6.idr	Intergenic	Intergenic	65437.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	4.79644050863219	5.01227629539079	5.07028864454157	4.05245003163623	4.34194249746368	4.28714997003644	-1.78071863749271	8.35898741766782e-05	0.00244132897525203
Merged-chr5-72763098-4	chr5	72762527	72763527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 14 of 17)	intron (NM_013689, intron 14 of 17)	-10250.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	4.38929625889759	4.68321986930666	4.77141977319893	4.59427689691047	4.3019303910813	4.72675101223044	-0.18795246323529	0.675044555058796	0.911995407960456
Merged-chr3-101003939-5	chr3	101003452	101004452	+	820.9023440000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 7 of 8)	intron (NM_001167906, intron 7 of 8)	25543.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	4.06577858251412	3.96526606180898	3.97184067354682	3.64180797335471	4.13680325035895	3.83835488609123	-0.308189217394246	0.56849819747989	0.868598429274735
Merged-chr10-24645346-4	chr10	24644831	24645831	+	899.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 24 of 25)	exon (NM_008813, exon 24 of 25)	49889.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.52555593815047	6.73716700055304	6.60396591625481	5.95284631903742	6.17388407560473	5.41247732892528	-1.19711755869446	0.000506953174365431	0.0105986330986429
Merged-chr2-73064200-4	chr2	73063696	73064696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83750.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.76456077948677	4.22207083194737	4.50933893520793	4.63022521750802	4.45513409648564	4.20735291806926	-0.179211667605756	0.708012885458971	0.923606271223831
Merged-chr5-43915416-4	chr5	43914924	43915924	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	46615.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.77546888740313	3.73832055032115	3.62606324077308	3.51950701208339	3.12635893078611	3.41946779319565	-1.33527484738272	0.0298171023898346	0.20803466842641
Merged-chr13-95893064-4	chr13	95892564	95893564	+	842.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.89172635614831	4.69353484180597	4.70075165036313	5.12687417480273	4.90588763162239	4.68424768952099	0.348985513602769	0.390164561546543	0.769518914518539
Merged-chr10-84534272-4	chr10	84533947	84534947	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175451)	promoter-TSS (NM_175451)	-559.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	4.04740085981858	3.43532714726153	3.9281986560493	4.06423526755735	3.28051615565438	3.69244000861608	-0.337388372212272	0.6101526535811	0.885428451824695
Merged-chr14-54735737-4	chr14	54735234	54736234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016972, exon 5 of 11)	exon (NM_016972, exon 5 of 11)	-23560.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	6.37037259578162	6.02422416902932	6.2792640962058	6.04118318780525	6.2580480238802	5.89367917971789	-0.245907821958717	0.422315545009886	0.791174870408254
Merged-chr8-80949440-2	chr8	80948933	80949933	+	832.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	65473.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	7.2125231490016	7.1753695571961	7.37206243567961	7.52954153006351	7.46005784753736	7.386315731075	0.313017189198226	0.173891740254901	0.553140727918843
Merged-chr16-44724406-4	chr16	44723902	44724902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145972, exon 1 of 9)	exon (NM_145972, exon 1 of 9)	101.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	7.80576035430123	7.93062199159105	7.72924952798056	7.91238943686932	7.66524627108124	7.58994369149615	-0.137071772181762	0.551684016985429	0.86140317538395
Merged-chr15-93271862-2	chr15	93271362	93272362	+	775.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	3317.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	3.28643125328492	3.36367198327671	3.37575409798981	3.3429071069641	3.21830510922134	3.49981225020029	0.0382332648226522	0.94973346176162	0.988262491699525
Merged-chr18-67290502-4	chr18	67290018	67291018	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	1295.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	3.55850204706342	3.28100858859961	3.43545146377609	3.63587132995138	3.55971491086111	3.50724565777569	0.511982180360263	0.381180225031836	0.763032822617589
Merged-chr15-76698094-4	chr15	76697576	76698576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182805, exon 5 of 11)	exon (NM_182805, exon 5 of 11)	1350.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	7.5382112341266	7.39555093268176	7.21701562542932	7.06409454288066	7.29608375713033	6.86280878730913	-0.443122727928577	0.0886640419214311	0.395252922704133
Merged-chr11-20455220-4	chr11	20454733	20455733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-88020.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.011658123809	3.09582852996535	2.86948013593348	3.12931463707615	2.87843802312155	3.12656309350393	0.20718200566444	0.764244395982386	0.941958626520407
Merged-chr16-90456834-4	chr16	90456289	90457289	+	946.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	70392.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.49987313727423	3.20543609065829	3.42532406236914	3.2032298973713	2.97393198574303	3.33338279334246	-0.868757449745276	0.185025832569814	0.569091204638575
Merged-chr9-32686067-4	chr9	32685560	32686560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9982.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.21351982584876	5.43472686511166	4.82702294334792	4.73783263856697	4.7989357710747	4.85428497696856	-0.860596177718465	0.0328418797216179	0.22080697542634
Merged-chr8-26681326-4	chr8	26680801	26681801	+	643.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143122.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.03717378978268	3.03278950910084	3.19288396830657	3.66676891273269	3.39776084796527	3.74883794308963	2.15611935725381	0.000969078972902536	0.0175867226122736
Merged-chr10-40349278-4	chr10	40348781	40349781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-27.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	7.14429682507886	7.313232824949	7.36423694233307	7.35652754752211	7.63127141952845	7.18942093709522	0.209004507265981	0.407679611423962	0.781797550673247
Merged-chr4-117189497-4	chr4	117188950	117189950	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6826.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	7.63628030511603	8.14825973020412	7.43946104587797	7.9248809119152	8.35198693798477	7.56154294650579	0.29965039820476	0.33784163395026	0.727720797269751
Merged-chr2-145890581-3	chr2	145890088	145891088	+	802.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12653.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.92823328289485	5.05606479640105	4.99588033060856	4.29916526903872	4.55045211189811	4.52523318820255	-1.23861847646875	0.00281228599328711	0.040062436728203
Merged-chr12-100186539-2	chr12	100186039	100187039	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1429.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	6.93517359313517	7.38166437154099	6.44861506152839	6.90937397277247	7.09152816298694	6.79670577862618	-0.0740315614750442	0.818488356518157	0.956975045804917
Merged-chr13-47228445-4	chr13	47227961	47228961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	34458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.71866353759088	7.9110183989576	7.5428703924066	7.23733133945167	7.51445751555606	7.28541740728222	-0.555814205281904	0.0232906965627604	0.178601128244509
Merged-chr17-64591898-3	chr17	64591409	64592409	+	919.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9740.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	6.37315575469561	6.64809150691593	6.13416388573478	6.48648472505183	6.29726445174253	6.02942655777489	-0.198880391390909	0.522744192275644	0.847733418668009
Merged-chr9-61370643-4	chr9	61370139	61371139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1727.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	6.25316862170174	6.46036521552374	6.49953581551912	6.36452808997886	6.82072912914411	6.31319479438081	0.20864378116171	0.487654851723496	0.828571120277069
Merged-chr15-37972004-4	chr15	37971497	37972497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-10942.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	7.57098538343268	7.87954768763386	7.32107352610998	7.66590525285248	8.27532211653051	7.27996702060299	0.291403503859757	0.370506770731859	0.754838358760403
Merged-chr13-9494895-2	chr13	9494395	9495395	+	929.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	218370.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.9273818061477	5.27725603827716	4.93316255263355	4.81456252055907	4.9841120095701	4.84664851720572	-0.378416228131181	0.334658000185209	0.725132921327797
Merged-chr9-99498100-4	chr9	99497589	99498589	+	809.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	27668.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	6.72947734868148	6.74421652652799	5.99888526786886	6.63593887262025	7.00981509507806	6.71675795177302	0.398396120542405	0.224161471977645	0.618982289654058
Merged-chr6-17652940-1	chr6	17652440	17653440	+	665.0	f0_balb.idr	intron (NM_007604, intron 3 of 9)	intron (NM_007604, intron 3 of 9)	15930.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.66200711103295	4.93337476307293	5.07146830490621	4.69763873749596	4.79143552162498	4.66516769280326	-0.38216669982961	0.348468367689214	0.736318567721867
Merged-chr2-31076006-3	chr2	31075493	31076493	+	879.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	20507.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.86001023826315	7.09700868722436	6.96047743840882	6.12015871389504	6.68781101397394	6.41186949103394	-0.846305748107121	0.00384887934288194	0.0504660498522724
Merged-chr9-56150958-2	chr9	56150458	56151458	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	MYSERV16_I-int|LTR|ERVK	10112.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	2.97864882903574	2.83802155285584	3.18622239011813	3.09717330189012	2.8435837362001	2.9085061265329	-0.231198769174791	0.742429678965179	0.935219340999573
Merged-chr8-46628082-1	chr8	46627582	46628582	+	583.0	f0_balb.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10791.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	3.68052046539537	3.4229828160868	3.8076119897959	3.60597871113311	3.86707851882869	3.87632163613207	0.496736838259664	0.379069820805871	0.76161785023458
Merged-chr12-110695954-3	chr12	110695468	110696468	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010480, intron 1 of 10)	CpG	427.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	8.45472067322318	8.41516742185348	7.90930943105668	7.92551607591276	8.00213741346144	8.07234029969183	-0.409108344482228	0.0937173926190696	0.407804455864844
Merged-chr4-145013473-3	chr4	145012967	145013967	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	120330.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.8652653102839	4.96099622830874	4.77382137364971	4.45427325086114	4.21744997931009	4.56116650575155	-1.13377022382427	0.00764507850675774	0.0832885278864512
Merged-chr13-89382614-1	chr13	89382114	89383114	+	604.0	f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-158022.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.76930607669054	3.61103774760741	3.83996117012824	4.62367298948872	4.39641728011211	4.55695109684726	2.32832687454351	4.80357774665728e-06	0.000214199408973129
Merged-chr6-136809305-4	chr6	136808798	136809798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1050.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	8.42771536524456	8.59209103295919	8.08401372713132	8.18008274244326	8.6627716627101	8.28949182532122	0.012773784938292	0.960271726024829	0.990360557499678
Merged-chr7-45395818-4	chr7	45395314	45396314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-72.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	8.05715922335357	8.40109141450397	8.14452814034941	8.07030285996213	8.31728968336818	8.1180422386975	-0.0500103241981437	0.826567619187504	0.959139811418046
Merged-chr9-94432392-4	chr9	94431940	94432940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	105641.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	6.77773743597802	6.39938220204102	6.29506977228199	6.89119720099899	6.97094354918891	6.90585425080763	0.636526313807833	0.0222875595775472	0.173431521306327
Merged-chr10-8021505-4	chr10	8021013	8022013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-65390.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.9759025686386	3.63637757883621	4.15907274171032	3.76323786210656	3.50827464580002	3.91398089650879	-0.647890535086075	0.25657939012953	0.653682511929703
Merged-chr9-106226390-4	chr9	106225886	106226886	+	896.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	3788.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	4.73561806322821	4.51531396402424	4.81092157490626	4.84085006424674	4.65657258354516	4.6437972596052	0.0727800089937043	0.859799220389716	0.967435965660262
Merged-chr12-35042083-4	chr12	35041568	35042568	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5121.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.12359966428745	5.69011301403935	6.26938442342062	5.89477472018346	5.4998192491333	5.53831396126299	-0.687055322921225	0.0498453232409135	0.28409166395166
Merged-chr4-83314663-4	chr4	83314169	83315169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	MIR|SINE|MIR	9520.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	7.65029253552054	7.81603967844566	7.64226059323499	7.68143600446611	7.97300062923133	7.74403754895338	0.148014002989708	0.518858397519048	0.845497711286192
Merged-chr7-143045011-2	chr7	143044501	143045501	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 1 of 4)	B3|SINE|B2	-7749.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.53589720241066	5.5719409747989	5.64372797998222	5.23505480770049	5.32182626006237	5.62742593694741	-0.358918469457432	0.289950104293875	0.68768829000042
Merged-chr3-144572369-4	chr3	144571883	144572883	+	834.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1956.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.94773569180677	3.52266098128812	3.77000065643021	3.53725351306375	4.01521691380936	3.5681237127852	-0.0741735103826904	0.901918258343028	0.977365418427752
Merged-chr13-43482008-4	chr13	43481508	43482508	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1035.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	7.04037531673414	7.47614165530844	7.39536876356967	7.20132036058777	7.61881488447831	7.26360758436299	0.096776994508288	0.720149511313203	0.928071578828455
Merged-chr14-70951878-2	chr14	70951390	70952390	+	753.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	61783.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.73303968389256	3.9460857679935	4.0692671789547	4.15169461784255	3.91334191985198	4.22595521459456	0.53162680018591	0.299939187927051	0.69666536257911
Merged-chr13-81241290-4	chr13	81240798	81241798	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	277224.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.36528728185862	3.91622897633619	3.91472490661935	4.08724610512907	3.95915662164052	4.66656155617176	0.49189942332776	0.376848626626067	0.759447323120003
Merged-chr10-128091127-4	chr10	128090629	128091629	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016774)	TTS (NM_016774)	-1654.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	7.12741405274269	6.69102602682366	6.93827904781255	7.37718421229416	7.62856999240351	7.54105637506917	0.880834842612114	0.00064116765931435	0.012781571297611
Merged-chr9-65582898-2	chr9	65582399	65583399	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2812.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.75604604821141	3.7421243047638	3.62495236748173	4.30029190002354	3.99435707233352	4.01940847642124	1.230286416384	0.0194651106398012	0.158556331484736
Merged-chr9-113772542-2	chr9	113772042	113773042	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 5 of 39)	intron (NM_001114347, intron 5 of 39)	-20788.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.52936411779217	4.66807289190286	4.4903810248784	4.6807615039661	4.50302218187353	4.9378619422674	0.3288017512999	0.443863705351759	0.803884349333946
Merged-chr11-70525892-2	chr11	70525392	70526392	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008946, exon 2 of 6)	exon (NM_008946, exon 2 of 6)	535.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	6.45568636076673	6.40042498495459	6.15412261497206	6.31826605971355	6.32977371156478	5.9792024103335	-0.200783382663362	0.4954248876281	0.832500902975543
Merged-chr2-32757156-4	chr2	32756638	32757638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045485)	promoter-TSS (NR_045485)	-96.0	NR_045485	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	5.76723281453171	5.5637609871001	5.60616569372451	5.60502398876654	5.32348864725933	5.23715384042246	-0.471649631869799	0.166313694253311	0.541553057226702
Merged-chr1-55052684-4	chr1	55052184	55053184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026424)	promoter-TSS (NM_026424)	-86.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	8.7309752717441	8.8215823424319	8.08985446118278	8.43913786318818	8.73195613270058	8.10784535562776	-0.187437898883801	0.516230840600552	0.844051513295388
Merged-chr9-65563870-2	chr9	65563370	65564370	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	16217.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.98941792252872	5.86260207327437	6.09960870725833	5.91111147958166	5.70008782584713	5.68094126038858	-0.375882158049246	0.221853033766865	0.61671749095216
Merged-chr3-20027523-4	chr3	20027023	20028023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	7787.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.58472943941811	6.50277198326912	6.8365910149707	6.46163653065887	6.83528035291377	6.63616244733402	0.0302043675448245	0.913829229532769	0.980805181886885
Merged-chr3-95658773-4	chr3	95658263	95659263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	42.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.51316750169794	8.10038280736128	7.81331642984111	8.31428787556248	8.09835105602727	8.01638590714626	-0.0448627784519197	0.865697759237182	0.968641478520565
Merged-chr18-66473190-4	chr18	66472687	66473687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14583.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.03846696400423	5.54037286551321	5.99909729025332	5.82110497101552	5.85192271934099	6.03778468912555	0.0497259782439566	0.880130243459581	0.972445222985099
Merged-chr18-68160760-7	chr18	68160260	68161260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-67186.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.98154381713453	6.75077577541142	6.36234446636572	6.21627008666985	6.17135176720904	5.54010446275454	-1.15151336144754	0.00107022069882791	0.0189955042466025
Merged-chr6-91713998-2	chr6	91713498	91714498	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	29931.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.14882939495847	7.2982293910841	7.22581761550838	7.07525825621843	7.2067312287391	7.17578888515652	-0.107258961432772	0.647255336087916	0.901296707040468
Merged-chr8-126587057-4	chr8	126586595	126587595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6341.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.30470932815243	6.61622078297433	6.44456972446612	6.38180119862397	6.30067616381013	6.37373095873884	-0.185949136045854	0.499980053765992	0.834885416691966
Merged-chr17-28177879-2	chr17	28177379	28178379	+	858.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357995, intron 1 of 13)	intron (NM_001357995, intron 1 of 13)	461.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	5.95652669962254	6.11360259169682	5.92205600720006	5.88107812044629	5.7750561536668	5.80964558178388	-0.323923619672095	0.277539341367922	0.674707488501667
Merged-chr4-101169989-3	chr4	101169492	101170492	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	95290.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.41666158182071	4.89851612061433	4.75300169731663	4.5019809261637	4.67866109637774	4.74289345040745	-0.147411051836115	0.734389971654521	0.932426757820458
Merged-chr15-86165447-2	chr15	86164937	86165937	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 2 of 12)	intron (NM_145475, intron 2 of 12)	-20291.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.58874058134107	4.49544185065924	4.36061366995127	4.76986172739604	4.67844941665525	4.12504866274702	0.185127469042352	0.697840764681346	0.920111182740464
Merged-chr8-106154213-2	chr8	106153713	106154713	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	B1_Mus1|SINE|Alu	3859.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	6.33524096113156	6.09757283716639	6.20411494820834	6.34888149754774	6.35331496280625	6.40172657914203	0.248835111549914	0.367930595214723	0.752923975674939
Merged-chr7-44858612-2	chr7	44858112	44859112	+	771.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021549, exon 3 of 16)	exon (NM_021549, exon 3 of 16)	1209.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	3.99898209833623	3.89839164040099	4.20274060326616	3.84506632428295	3.69319376528387	4.38948947982385	-0.0967572111369465	0.862020000343732	0.967996224966109
Merged-chr3-115682979-4	chr3	115682481	115683481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32074.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.93277842356831	5.62017829813777	5.6756518766616	5.62160662730843	5.13383441742198	5.32577361898029	-0.717192234112267	0.0434025262098728	0.26177423897297
Merged-chr2-84557233-1	chr2	84556733	84557733	+	644.0	f0_balb.idr	Intergenic	Intergenic	-50360.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.52954501537158	3.72464478138343	3.34849793090211	3.28801532107728	3.11484464614023	3.30348516104168	-1.25590295380219	0.0457277680374378	0.270089622355711
Merged-chr3-103228845-1	chr3	103228345	103229345	+	677.0	f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-50448.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	3.03532050213908	3.11648718010184	3.0382513639905	3.25351850290698	3.37303153275736	3.55752660476899	1.38455450910718	0.032389811155622	0.218757419369886
Merged-chr2-61595583-4	chr2	61595059	61596059	+	724.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	intron (NR_149323, intron 2 of 9)	2462.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	4.34445772286437	4.23702590345325	4.19747753207302	4.22893328032974	3.88781245972298	3.86196889916311	-0.733739283215639	0.140618850982076	0.501032559093762
Merged-chr13-44937917-4	chr13	44937410	44938410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	RMER17C2|LTR|ERVK	64186.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.93826166686188	4.79015586216908	4.74062605963631	4.65846536806364	4.98440091285706	4.88336430116819	0.0539119074680793	0.892696574681688	0.975146620821922
Merged-chr11-70225781-2	chr11	70225281	70226281	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007528, exon 9 of 9)	3' UTR (NM_007528, exon 9 of 9)	4017.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	2.67709676211581	2.66764806278132	2.80003962388704	2.67280571833019	2.76815432604673	2.68849983560771	0.00110635470855653	0.998797352430338	1
Merged-chr1-172504090-5	chr1	172503571	172504571	+	999.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	(GGGTG)n|Simple_repeat|Simple_repeat	3825.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	3.04395551872349	2.96684357176796	3.2540269158252	3.4472952121041	3.17804064728684	3.26943868617813	0.913791885077557	0.161666910285433	0.534783258167936
Merged-chr5-38092073-1	chr5	38091573	38092573	+	649.0	f0_balb.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	52843.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	2.57668295900456	2.76393276033557	2.75580167582711	2.41741602507219	2.36666081054014	2.64717059586005	-1.35277619688178	0.0986504908158868	1
Merged-chr5-24394413-5	chr5	24394002	24395002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029020, exon 1 of 16)	exon (NM_029020, exon 1 of 16)	346.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	6.83994090305844	6.71828599816681	6.88750424398171	7.17937134463134	6.99734627891106	6.91715739084295	0.346318595915729	0.165761671142301	0.540890083623865
Merged-chr11-114968191-1	chr11	114967691	114968691	+	779.0	f1_c57bl6.idr	Intergenic	Intergenic	-7774.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	6.79457583025674	6.91629762072796	7.00706012877304	6.68593905306915	7.10596825499968	6.99916882399583	0.0633609111771956	0.810786680931359	0.955096593239846
Merged-chr2-158174685-4	chr2	158174204	158175204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17304.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	8.22327567909507	8.19666592994234	7.9469703549138	7.88010959134634	8.05736415706973	7.85026671175316	-0.27900546184038	0.211371049091837	0.603905867353298
Merged-chr3-126596264-4	chr3	126595727	126596727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293665)	promoter-TSS (NM_001293665)	-724.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.94085322703795	8.19330486431891	7.66074853422746	7.79940021056028	7.98522599724195	7.78102647923265	-0.136732596388348	0.579097927674091	0.872437416842052
Merged-chr11-103374112-4	chr11	103373605	103374605	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-10413.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.39888706220092	6.49976354342017	6.25331276570169	6.18487489651758	6.24580253703098	6.55195698300089	-0.109360789103109	0.702691831837771	0.921985933480884
Merged-chr8-8239704-4	chr8	8239195	8240195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	421078.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.99308366278696	4.19834424125437	3.83326082249731	3.94047360580586	3.82799477185911	4.40501486417529	0.145043337076634	0.789178669828555	0.949136066475312
Merged-chr14-56887120-4	chr14	56886564	56887564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360643, intron 1 of 24)	CpG-4519	221.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	7.29300281007169	6.94294483472312	7.28030571324101	7.49710143664332	6.99375296484993	7.09670586471252	0.0541892111298077	0.844494451181316	0.96373428957366
Merged-chr10-127603860-4	chr10	127603292	127604292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17356.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.34604849948815	7.99392770669118	8.46000026173712	8.33753019587185	8.65802060817132	8.21932507091395	0.203143755492014	0.415148389589521	0.786137484375978
Merged-chr14-70929118-1	chr14	70928618	70929618	+	627.0	f0_balb.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	39011.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.43186744926938	3.28975091549694	3.43099633659485	3.16256625753468	2.91307595174752	3.44888625640151	-0.815753131736396	0.22654800550504	0.621496371437256
Merged-chr13-97253996-2	chr13	97253496	97254496	+	708.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007930)	TTS (NM_007930)	12891.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	2.80592612064731	2.63469352811141	2.86910915017052	2.78372110418753	2.78360555293263	2.88209727194094	0.232864635897864	0.746946728100631	0.936426570480179
Merged-chr5-63832293-2	chr5	63831793	63832793	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	19798.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.38156738518616	5.90524560027858	5.72481450561456	5.54207486193443	5.6419088158449	5.7093208683967	-0.109937769048421	0.748063647189391	0.936880860325556
Merged-chr7-143601140-2	chr7	143600640	143601640	+	932.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-1050.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	3.02695169374697	3.07301192009397	3.28676604437064	3.28315053833997	3.20347902130867	3.12946244807109	0.348463432368399	0.588639452637051	0.876614432665912
Merged-chr3-98013444-4	chr3	98012921	98013921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010928)	promoter-TSS (NM_010928)	-117.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	7.78503459549632	7.66240681068398	7.48162747868851	7.55976643665886	7.52203394016509	7.69144661413101	-0.0957241532385469	0.677333805498779	0.912824192412659
Merged-chr13-60736636-4	chr13	60736139	60737139	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49725.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.29276176642842	6.03681179802606	6.47809243315555	6.14840572030922	5.97675073351772	6.2660592102527	-0.244740727700137	0.418471069264975	0.788591657834186
Merged-chr15-38285793-4	chr15	38285296	38286296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	14104.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	6.40427986497482	6.64714467011874	6.72892858429087	7.05840048433333	7.24104629457335	6.84914196448799	0.733508809408925	0.00647659468529053	0.0738630058352049
Merged-chr17-87258937-2	chr17	87258447	87259447	+	879.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	7000.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	2.22538110500781	2.28218650190494	2.4185566956045	2.09627324945586	2.09257996037018	2.1073158386715	-1.60092299654568	0.0811621069044468	1
Merged-chr6-57765615-4	chr6	57765113	57766113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	59512.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	7.54066462678801	7.2626202588014	7.08583619533573	7.29523339239192	7.44874703278525	7.23179748219932	0.0227462571399879	0.928781655837804	0.983898381500077
Merged-chr11-77376178-2	chr11	77375678	77376678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	27898.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.91648594592177	4.81379258870547	4.93567208273752	4.86915140038846	4.55492012526563	4.65769153316836	-0.433371078034018	0.280761995373405	0.678846264691369
Merged-chr10-54118561-4	chr10	54118092	54119092	+	831.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42670.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	7.70265716216258	7.74959804160516	7.29734801977419	7.27985680585317	7.48581631578042	7.64367550374628	-0.19211978206149	0.454226465235345	0.810104016757399
Merged-chr18-88894225-4	chr18	88893741	88894741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018821)	promoter-TSS (NM_018821)	-34.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	6.63705692940642	6.40310469652646	6.40403465517844	6.53653861282038	5.91044792796838	6.20422963444347	-0.408783150264219	0.192375240789959	0.579434056564092
Merged-chr9-118878709-1	chr9	118878209	118879209	+	645.0	f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-47827.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.15821381040015	2.08929108891809	2.25692520339406	1.93454070551819	1.98926892576108	2.07051201224722	-1.35068421343513	0.152342452241953	1
Merged-chr12-100320354-2	chr12	100319854	100320854	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43745.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.08238249007676	3.0595514029405	3.62790741525356	3.03515131867977	2.99536506251149	2.88140696696621	-1.31263969279543	0.0697301026572749	0.34566494342008
Merged-chr14-46867157-2	chr14	46866656	46867656	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15809.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.79669154351312	3.67540869415449	3.96730811820176	3.97515658254367	3.82445986341621	4.33581026535197	0.733171657112339	0.172750845753828	0.551413701606739
Merged-chr12-21316435-4	chr12	21315932	21316932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	40.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	5.86268553006492	6.10931186209705	6.0407888383051	5.56659027063	5.50672537894854	6.18221273819128	-0.412479498251715	0.24037768764582	0.637435893658386
Merged-chr1-156669285-2	chr1	156668760	156669760	+	678.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 3 of 5)	intron (NM_023141, intron 3 of 5)	5079.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	2.41663827847828	2.54587454135809	2.96427002703193	2.83846810661724	2.46819852272655	2.92401440549498	0.491346563657783	0.561284877232976	0.865407801976397
Merged-chr7-127273267-3	chr7	127272741	127273741	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009266, exon 1 of 1)	exon (NM_009266, exon 1 of 1)	818.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	6.57835201332881	6.6482728219814	6.30228273894385	6.17817241105325	6.20237313281792	5.53279937204091	-0.829961115640926	0.0139712291278914	0.126580796305922
Merged-chr4-130828937-2	chr4	130828437	130829437	+	999.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36400.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.80199032903116	4.62326992047481	4.66172772187072	4.60439980226918	4.77909182224884	4.37697744548087	-0.208925384622556	0.626116177996118	0.892819497179456
Merged-chr18-80712545-4	chr18	80712039	80713039	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	CpG	532.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.67449569346541	3.45941683109404	3.53657397698028	3.64489547454188	3.41063144527085	3.6074380484051	-0.027081287983322	0.962383022243924	0.990854599110746
Merged-chr1-165647272-2	chr1	165646772	165647772	+	899.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12731.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.82852945857813	2.85206617176493	3.22341788092875	2.81688318094521	2.9308355191323	3.07701921795921	-0.142696474167386	0.841836469395471	0.963002495523594
Merged-chr10-62507872-4	chr10	62507381	62508381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-124.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	8.20638680861209	8.45013572266309	8.06645394195942	8.17806604523524	8.47675194633826	7.81606929368625	-0.0846324816302145	0.748290779634583	0.936917346693066
Merged-chr13-55202756-2	chr13	55202256	55203256	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-7026.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	6.45121738204206	6.94226987024738	6.33462548318973	6.63901660470477	6.93172025174283	6.58608160912538	0.188335509795853	0.540408149063274	0.85632302227606
Merged-chr7-102553492-3	chr7	102552997	102553997	+	671.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147101)	promoter-TSS (NM_147101)	-789.0	NM_147101	259105.0	Mm.424092	NM_147101	ENSMUSG00000073977	Olfr549	MOR31-3	olfactory receptor 549	protein-coding	3.64121339126404	3.52269105101488	3.75710951107511	3.28856781446033	3.42069540907072	3.82534389595546	-0.410913626976993	0.497279524079605	0.833503910714819
Merged-chr2-84967583-4	chr2	84967071	84968071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12890.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	3.9566740529834	3.71675061342567	3.90108914905546	4.12746588091059	4.22848283546789	3.91977326803869	0.750012592596762	0.142897846398297	0.50455063667587
Merged-chr10-80105097-2	chr10	80104597	80105597	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	ID_B1|SINE|B4	-2395.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.43929596064443	3.9925588089244	4.51278522293983	4.31426230398224	4.45199032619606	4.7283251074693	0.445527735849806	0.358310165595575	0.744612194277637
Merged-chr2-131197056-2	chr2	131196556	131197556	+	606.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023117, exon 15 of 16)	exon (NM_023117, exon 15 of 16)	10108.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	3.01804449375464	3.16442293967598	3.07051278735821	3.07884130299834	3.07128688033572	3.25594307786958	0.202921566719905	0.755272378026238	0.939269406300643
Merged-chr9-119088314-4	chr9	119087804	119088804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-43.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	5.35697204774001	5.06590995302535	5.51622278115202	5.84391830811344	5.72968587886169	5.49220168832863	0.737462073393333	0.0356326440114852	0.231893682785169
Merged-chr3-63964761-4	chr3	63964249	63965249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331067)	promoter-TSS (NM_001331067)	-16.0	NM_015728	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	7.14166613134165	7.28483696737048	7.33295116947941	7.08895150305551	7.1336176086207	7.10929005088185	-0.21179497623198	0.366461561348436	0.751528900199159
Merged-chr17-6982547-3	chr17	6982032	6983032	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026611, intron 2 of 8).2	intron (NM_026611, intron 2 of 8).2	3672.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	4.31885880772915	4.13387702702475	3.99988178794085	5.33025674473744	5.07983420993202	4.98441122041456	2.34705479708565	3.58170817905466e-07	2.20108400415642e-05
Merged-chr10-83543977-4	chr10	83543494	83544494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033375)	promoter-TSS (NM_001033375)	53.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	7.36930078813774	7.34360876581041	7.1268965235192	7.40558803345243	7.04722226323506	7.1971360976587	-0.100323141251585	0.68820030088142	0.917193226920892
Merged-chr10-8747957-4	chr10	8747458	8748458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	138112.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.67770830340393	6.50789514974238	6.72363266392413	6.36658359734233	6.13543345932016	6.1459881288053	-0.676331267683898	0.0143213136532639	0.128743287214864
Merged-chr13-85290864-4	chr13	85290357	85291357	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.78255394607865	6.16066775819549	5.99768796545964	5.92443364707373	6.0864783419457	5.89237973362827	-0.0244926422885705	0.936847472274714	0.986037792257163
Merged-chr1-74368470-4	chr1	74367965	74368965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	6357.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	8.15063233052173	7.85823316025774	7.73715435733944	7.79257728417115	8.07970001342419	7.81101907378359	-0.0373011759767757	0.877850208506358	0.971748379457442
Merged-chr5-64865450-3	chr5	64864939	64865939	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61916.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.51237648609483	3.42172226684461	3.54614386178068	3.18343369786017	3.2984596503988	3.61555016211798	-0.461020997047692	0.452123363745441	0.809286173636239
Merged-chr5-24687931-4	chr5	24687426	24688426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2111.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	7.61201541616282	7.71388547004774	7.07806733910556	7.50518019374725	7.66256221843966	7.09417982688555	-0.0802856014095448	0.784219746487296	0.947513080979134
Merged-chr12-85659526-4	chr12	85658995	85659995	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27225.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	3.13081918247108	2.99213153829942	3.19972171510263	3.081045652191	2.90698218249317	3.04105390943689	-0.447136551328786	0.502745894608315	0.8366663412982
Merged-chr6-134640970-4	chr6	134640456	134641456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026371)	promoter-TSS (NM_026371)	16.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	6.50947253595327	6.61315466802919	6.93797969386083	6.16288216177084	5.9095653289728	6.12293452223301	-1.03271504415239	0.000441851956879227	0.0095445528629301
Merged-chr11-70787202-4	chr11	70786705	70787705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	22758.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	7.66955139421524	7.49905129385701	7.49408625282108	7.69340525624892	7.72255087204453	7.3083036055299	0.0556770691141087	0.819649256964015	0.957285308539088
Merged-chr1-36079851-4	chr1	36079358	36080358	+	882.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	11458.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.79685860931435	6.08859230740785	6.19007357275821	5.90826803912951	5.92044341627824	5.50687381614527	-0.396247154626489	0.230331128725452	0.626192360633515
Merged-chr10-128524835-2	chr10	128524335	128525335	+	931.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 1 of 30)	intron (NM_011843, intron 1 of 30)	1024.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	4.19913356947071	3.92966665824815	4.1431375377857	3.98723938245186	3.95993127233315	4.07243735910044	-0.264878681557401	0.590247670957914	0.877133359617561
Merged-chr12-80832401-4	chr12	80831916	80832916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	41884.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	7.17087921355608	7.13582182613847	6.77311856713118	7.17038634320926	7.78389959444141	6.86475905206898	0.449018900063097	0.164799655048048	0.539485785555037
Merged-chr7-118104900-4	chr7	118104409	118105409	+	846.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	11238.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.00380966947768	4.0336001235353	4.16093526769014	3.92769004005745	3.89909292689118	4.04641755806771	-0.327302463926637	0.505067451976996	0.837928144581384
Merged-chr11-62648759-4	chr11	62648254	62649254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	90.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	4.84717611053253	4.51687929093897	4.8786103524536	4.90402823044549	4.92930697204903	4.79430020265822	0.295277307716892	0.465155524301705	0.816829749833199
Merged-chr13-64344324-3	chr13	64343829	64344829	+	732.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26191.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.22532717403694	4.37708233115346	4.32734386208951	4.62285571525144	4.63837710198794	4.52702456229485	0.732175283984183	0.0893183338772903	0.397032086074383
Merged-chr10-67547428-2	chr10	67546928	67547928	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005419, exon 1 of 1)	3' UTR (NM_001005419, exon 1 of 1)	1527.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	5.20441536282329	4.71517060178763	4.66456259153657	4.77387287032978	4.968044674312	4.73237651776514	-0.131020516360769	0.759168753359374	0.940311236380535
Merged-chr1-134416872-4	chr1	134416387	134417387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	1223.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	6.84301756917921	6.75863258562103	6.72679746342057	6.61265205541331	6.89242654091278	6.81611522102376	0.00415443466869978	0.987080504556337	0.997161899445921
Merged-chr17-31088925-4	chr17	31088451	31089451	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	31257.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.22907722461231	5.44335353023794	5.59364879266457	5.09669655630558	4.97963328639756	5.20139619289454	-0.689323012273241	0.0567324448172319	0.307050197157772
Merged-chr2-70945100-3	chr2	70944595	70945595	+	840.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73279.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.00414838304984	4.07350515676914	3.8462929931097	4.34375688730398	4.52555278435764	4.48980342445924	1.29115854952299	0.00709547268442076	0.0789334286568875
Merged-chr2-128770775-2	chr2	128770290	128771290	+	936.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.15915258536893	5.06292472492554	4.90417634490845	5.16624176597538	4.75690261490935	4.8136779474454	-0.274435574501696	0.48788220554938	0.828740765241895
Merged-chr2-6460407-3	chr2	6459883	6460883	+	810.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	107647.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.7729720251617	4.44500537536661	4.31615921142196	4.75007856073869	4.52267457826966	4.23669600645976	-0.0176937833773238	0.970124113038682	0.993355900638953
Merged-chr7-58677364-3	chr7	58676805	58677805	+	668.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	19103.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.32319472274771	3.21260293960712	2.91921980564004	3.30309293850733	3.39817502015125	3.30845020594136	0.687608425784552	0.310016474448767	0.705595087555267
Merged-chr7-90060117-4	chr7	90059617	90060617	+	914.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30958.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.91451138907534	5.05064302385926	4.84350335321353	5.22003271465724	4.90673498941263	5.0917346423299	0.276188285449921	0.469551516950235	0.818977178978635
Merged-chr9-25155972-4	chr9	25155471	25156471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4190.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	5.42880322868227	5.61915742390315	5.74664740741069	5.49728545708419	5.60091480040498	5.68156714825492	-0.00870064670128702	0.978798120273755	0.995160277495735
Merged-chr7-19327322-4	chr7	19326809	19327809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17264.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	6.96409390848413	6.81069060873801	6.27121423852037	6.94160659552725	7.0665066646476	6.47988540084185	0.211583971947355	0.512065942368263	0.841669751538036
Merged-chr1-189007819-4	chr1	189007324	189008324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172650)	promoter-TSS (NM_172650)	16.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	6.00198798897083	5.89283700950756	5.59167448853921	6.0940122748313	5.78855044117365	5.92283352317444	0.152348882524144	0.635002835126938	0.89639854616657
Merged-chr10-60286182-2	chr10	60285682	60286682	+	980.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	1721.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.93559526091455	6.10903714109532	5.97956645659016	6.43253367745726	6.62260137776627	6.06534265312515	0.66151854199033	0.0306662710965607	0.21174002866174
Merged-chr6-29507834-4	chr6	29507312	29508312	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 1 of 37)	CpG	140.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	4.29025861698664	3.96821054830572	4.13776622668744	4.11240438217439	3.87665187310689	3.85774576808658	-0.539529625482291	0.287365694619142	0.684650023087306
Merged-chr13-49191120-5	chr13	49190628	49191628	+	912.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	3581.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.13477328694617	8.48190475534183	8.21703959225741	8.28638135894694	8.35805619741069	7.91526936241792	-0.114259618966017	0.637167917879046	0.897338937840938
Merged-chr2-30094370-2	chr2	30093870	30094870	+	590.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-735.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	4.48182783805457	4.80317797646016	4.94073887255295	4.76887711223048	4.63622461933708	4.82940073594384	-0.0155559270119636	0.970392195343441	0.993459247380987
Merged-chr7-19562358-4	chr7	19561789	19562789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_199149, exon 1 of 13)	5' UTR (NM_199149, exon 1 of 13)	109.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	6.97952397662699	7.22809426381453	6.69556668889657	7.29851044288178	7.10010450719197	7.16062045993466	0.287358851670134	0.283513593717036	0.681376161050487
Merged-chr6-53710829-4	chr6	53710329	53711329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109996.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	3.42399092776239	3.31353080790563	3.59596324529977	3.60131630070192	3.71620556459022	3.33203790495495	0.459673794737824	0.446692253388955	0.80610963227077
Merged-chr6-115717826-4	chr6	115717315	115718315	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41180.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	6.03178438244568	5.94354571207609	5.38378102754105	5.7659234198553	5.72220655703695	5.48186743861319	-0.292425596650639	0.409889808818316	0.783037226945994
Merged-chr3-67430737-1	chr3	67430237	67431237	+	555.0	f1_balb.idr	intron (NM_138591, intron 1 of 17)	intron (NM_138591, intron 1 of 17)	622.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	4.11398751176081	4.05166249677402	4.00214626359104	4.13095444878518	3.87870800811377	3.69667065283454	-0.415512086009877	0.424105775454684	0.79246414638707
Merged-chr1-132316835-5	chr1	132316270	132317270	+	933.4400019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	645.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	7.80363381877465	8.03685604382548	7.95897587142094	7.83029051385836	8.01622814305001	8.02249338456987	0.0320787627458174	0.88439093070117	0.973494557119575
Merged-chr17-29660603-4	chr17	29660093	29661093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028791)	promoter-TSS (NM_028791)	-2.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	7.75802403726752	7.73197883472466	7.28756461095865	7.506129043902	7.74761828653028	7.57301212565762	-0.00418971325412664	0.986744049333096	0.997073310870088
Merged-chr13-36207092-3	chr13	36206589	36207589	+	688.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024274, intron 2 of 6)	intron (NM_024274, intron 2 of 6)	89446.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	2.44147975015423	2.67369380413098	2.65938979596598	2.53732426796606	2.56575762409074	2.41224662875353	-0.497962502702946	0.536585046198038	1
Merged-chr9-20890980-2	chr9	20890480	20891480	+	804.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 7 of 11)	exon (NM_145610, exon 7 of 11)	2805.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	4.54647902288028	4.60543014852556	5.31701453533655	5.57215268526586	5.59951511366772	5.7471358370698	1.59614899981626	0.000140541738599527	0.0037628173244121
Merged-chr10-127634291-2	chr10	127633715	127634715	+	991.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8771.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	5.48427276727839	5.00758138782756	5.46919967027413	5.11543769521181	5.05350130688469	5.1011337563771	-0.499002641834573	0.186706075010785	0.571407940617088
Merged-chr6-120152402-2	chr6	120151902	120152902	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-41421.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.11350728748498	6.19675968420416	5.89593276948819	5.53649575223803	5.80133456345773	5.58014811184154	-0.759304992915334	0.0164490517454323	0.141745308371368
Merged-chr19-4098586-4	chr19	4098066	4099066	+	994.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026373, exon 4 of 4)	3' UTR (NM_026373, exon 4 of 4)	1215.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	6.1491089931648	6.15354620981449	6.18633933823886	6.20241295663033	6.33704066438453	6.18352727723748	0.146261918617174	0.598170058126898	0.880655214435438
Merged-chr9-41070973-6	chr9	41070451	41071451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	8555.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.34123429582465	5.45643014050411	5.53215265003955	5.3105411718281	5.48486946787293	5.12240892426392	-0.221019821189776	0.528658463092126	0.850585575598857
Merged-chr5-139388345-4	chr5	139387838	139388838	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1566.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	6.32671400176296	6.56415230147296	6.67961333195879	6.15432399574616	6.01810498019788	6.37149562899958	-0.573565815471129	0.0491152454301002	0.281633336210308
Merged-chr7-125600747-4	chr7	125600246	125601246	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2683.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.30461705126571	5.98938435422347	6.26531865140203	6.53166072809589	6.58663742616434	6.34542751321308	0.508349355213601	0.0743313862146293	0.358646048437034
Merged-chr10-77530289-4	chr10	77529784	77530784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008404)	promoter-TSS (NM_008404)	-64.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	7.03812564930431	7.15769002425008	6.97039167273227	7.27747144558267	7.54668089543974	6.43986940411101	0.184314196489926	0.584854792576578	0.874754719025748
Merged-chr1-123905940-1	chr1	123905440	123906440	+	646.0	f0_balb.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	139619.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.42575389731818	3.19751093772605	3.40312052144262	3.32778805158069	3.31275238780003	3.62875564143083	0.307217091647445	0.616939701202725	0.888607350961806
Merged-chr7-107603702-2	chr7	107603202	107604202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	-3142.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	2.58082922654	2.53800372658288	2.6658661376344	2.53893618824944	2.30328738649189	2.67839448377609	-0.490416884257764	0.547951982472747	1
Merged-chr16-20674313-3	chr16	20673873	20674873	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304432, intron 3 of 31)	intron (NM_001304432, intron 3 of 31)	1646.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	4.26412073139953	3.95215019049632	3.97946206779437	4.20360295810433	3.88364636494768	4.23767507237336	0.0947807718210256	0.852314310532218	0.965371685862846
Merged-chr14-64725423-3	chr14	64724934	64725934	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 8 of 39)	LTR67B|LTR|ERVL	72903.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	2.92359252607485	2.69150964335061	2.89667691601765	2.97843166766046	2.61586011405061	2.84816467949767	-0.0980580680763385	0.895401450181717	0.975665889379756
Merged-chr5-81037317-4	chr5	81036840	81037840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	15747.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	3.75056898163047	3.70411322426222	4.09208130554564	3.40602199848778	3.77963364047229	3.6900618642747	-0.703113817959347	0.226179418971029	0.621140322788657
Merged-chr17-28698335-4	chr17	28697844	28698844	+	976.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	5776.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.7402842016998	6.65304724215513	6.42765598177485	6.60512797396874	6.46532843407105	6.61248221326088	-0.102275878182287	0.702195695344246	0.921835734877076
Merged-chr5-34536747-2	chr5	34536247	34537247	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-6618.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.90703678600897	6.03612286979332	6.10543420714254	5.46592829353476	5.78149897069975	6.0176472607714	-0.438520736477195	0.17753369266899	0.558559515241856
Merged-chr16-35932377-4	chr16	35931894	35932894	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013371, exon 3 of 5)	exon (NM_001013371, exon 3 of 5)	-6076.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	3.72158633575622	3.4931649023013	3.80303940075555	3.9918474043599	3.74470077864781	3.87266064935843	0.64688104399063	0.234859821019253	0.630984339781408
Merged-chr15-31530557-1	chr15	31530057	31531057	+	1000.0	f0_balb.idr	intron (NM_172606, intron 1 of 25)	CpG	480.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	7.90441578954608	7.58221974253921	7.5317809937912	7.91538921215572	7.30724043809848	7.64647003892034	-0.0605786631489016	0.823782407263512	0.958451755471188
Merged-chr18-11794449-4	chr18	11793990	11794990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44784.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	6.31728261424012	6.58519632294842	6.44636250300069	6.77593323874185	6.81003631495274	7.13332561884828	0.713975197820252	0.00931534452874859	0.0957831975897678
Merged-chr17-5936444-4	chr17	5935952	5936952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4828.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	6.62893332248385	6.71666524473643	6.92895198160158	6.99856751123949	7.02587074743248	6.79876204151024	0.301869732606895	0.241267505261484	0.638385260200477
Merged-chr13-69382957-4	chr13	69382442	69383442	+	874.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150922.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.7178570542499	4.66255198548234	4.68446631727517	5.19283616966072	5.41679156426154	5.02616161333825	1.18340485763491	0.00216618837228448	0.0328014926444125
Merged-chr17-78936524-2	chr17	78936034	78937034	+	822.25	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	536.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	6.91517788563261	7.57115900927731	7.01228452214374	7.20450990372125	7.55169787670887	6.86262002579494	0.0585820867934696	0.854076504153591	0.965898712301897
Merged-chr11-4536826-4	chr11	4536343	4537343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	PB1D10|SINE|Alu	57972.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	6.47452127510487	6.91592343179028	6.58650905440759	6.51250058140199	6.79119299743058	6.46582065429629	-0.112963111709328	0.696330857605699	0.919440123947475
Merged-chr16-91740723-2	chr16	91740223	91741223	+	998.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11352.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.72463149159079	5.85972215784039	5.68814611697001	5.69793076381687	5.55596896173934	5.55484660750489	-0.293110792721431	0.351680342369647	0.739403630741215
Merged-chr2-22778903-2	chr2	22778403	22779403	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	4576.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	3.99895352337636	3.76719349093802	4.19791516117281	4.20000075340737	4.00251882655886	4.58111411564297	0.792921687165352	0.132156500157597	0.486197270886281
Merged-chr5-99233269-3	chr5	99232720	99233720	+	715.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 6 of 13)	intron (NM_181318, intron 6 of 13)	19707.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.2734786476729	5.01277525491874	5.48226919471302	5.52299762665607	5.54064828400092	5.45929838074698	0.495537511541909	0.160286153835735	0.532965919658045
Merged-chr10-81545317-4	chr10	81544832	81545832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-286.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	6.08034005647118	6.21571181505806	6.12956551425296	5.90463165876626	5.98885367197138	6.12624969407505	-0.240136580655991	0.405390323174356	0.780134157220244
Merged-chr9-21169095-4	chr9	21168624	21169624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	3410.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	7.05223564327571	6.87312100877669	7.04511224963383	6.876914803562	7.16279640141507	6.9119256813097	0.0120497858750014	0.962091494585719	0.990739203008446
Merged-chr16-78198924-4	chr16	78198402	78199402	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	56552.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.26087171563631	2.9004893913707	3.25437696736026	3.26644827943673	3.15533306410316	3.32572083704812	0.423991041032448	0.523170776361069	0.848014843173176
Merged-chr3-101924455-4	chr3	101923952	101924952	+	986.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039371)	promoter-TSS (NM_001039371)	1.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	2.37874843276671	2.53676778074947	2.60002139481237	2.610203036556	2.31221082233558	2.41705911788582	-0.332288393697878	0.687328022561617	1
Merged-chr10-130129182-4	chr10	130128688	130129688	+	903.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2133.0	NM_146674	258669.0	Mm.377631	NM_146674	ENSMUSG00000095804	Olfr824	MOR210-3	olfactory receptor 824	protein-coding	2.9809319835321	3.09380551099629	3.05414028865332	3.00719512783154	3.09112046843989	2.88095954996363	-0.192559763213142	0.776428389536314	0.944843997124575
Merged-chr1-37997295-4	chr1	37996769	37997769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	-61.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	7.34091894373727	7.57923944348639	7.50935561879561	7.62471149181921	7.67430777869073	7.57603016108705	0.215785044693186	0.340495203143788	0.730173453949955
Merged-chr1-37299824-4	chr1	37299351	37300351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290797)	promoter-TSS (NM_001290797)	13.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	6.50550804251966	6.90059125354434	6.33533629507822	6.64487912619045	6.54874931487646	6.08130444800782	-0.247519059550534	0.440619439342538	0.801886710894642
Merged-chr11-117147263-2	chr11	117146763	117147763	+	644.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166506, exon 8 of 16)	exon (NM_001166506, exon 8 of 16)	32091.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	2.4229725797037	2.53140245463851	2.69361490269088	2.6577580495739	2.42330898997089	2.76672859342527	0.391110486447401	0.624609076044658	1
Merged-chr17-45573904-4	chr17	45573418	45574418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-657.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	8.06158754181138	8.03538544846664	7.93104701608358	7.82875303799095	8.22549747200254	8.06150449077983	0.0563611539645642	0.804716205604397	0.953651704501661
Merged-chr11-75336876-2	chr11	75336376	75337376	+	803.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 4 of 16)	MTEa|LTR|ERVL-MaLR	11507.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	4.43644124843321	4.62205268416836	4.81103189166933	4.8175481756815	4.91517021315714	4.60079185129577	0.398139106753305	0.343807402897576	0.73257256985281
Merged-chr11-51920416-2	chr11	51919916	51920916	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47215.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.07773831282676	6.35207325192425	6.2871669752415	5.84130380278943	6.16662618524971	6.24956875473851	-0.249657703487266	0.409483401017948	0.782821248291819
Merged-chr13-90062077-2	chr13	90061577	90062577	+	871.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028012, exon 3 of 8)	exon (NM_028012, exon 3 of 8)	27531.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	3.39189270606692	3.22615168565237	3.39218415281778	3.45636773996558	3.16078926751584	3.17412628212044	-0.262537832236659	0.676739281227791	0.912549881054299
Merged-chr17-48324476-4	chr17	48323984	48324984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8322.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	6.73654727915444	6.45837058177167	6.65282059220507	6.9633077054569	6.89615381434277	6.79113871888846	0.421042153188669	0.103835496943396	0.429650782930444
Merged-chr1-155098128-4	chr1	155097635	155098635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	1501.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	8.6825503990716	8.8715184713431	8.40396144498765	8.45188943700875	8.82546898709005	8.45927974722014	-0.104686875522925	0.66560602047651	0.907855843812957
Merged-chr1-128004595-4	chr1	128004088	128005088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	B4A|SINE|B4	97883.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	4.04999789561858	4.17828311901932	4.66527816834897	4.11526268562983	4.13305367694487	4.34988800882324	-0.310853345979047	0.536564440547974	0.854055228150433
Merged-chr6-129399293-3	chr6	129398813	129399813	+	897.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	2016.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	8.22304274599677	8.25837793034815	7.91191529811615	8.4237063519612	8.75343540852214	8.03179833160399	0.419787961257247	0.116395904266114	0.455552256402139
Merged-chr14-118664433-4	chr14	118663924	118664924	+	901.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033336, intron 3 of 30)	MTC|LTR|ERVL-MaLR	12507.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.20544990413401	3.89548180441413	4.19632092323288	4.32748600726634	4.24955976502978	4.26438759912152	0.49442599222625	0.299719387689081	0.696404227897918
Merged-chr1-152674032-4	chr1	152673535	152674535	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-48818.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	3.79900628322611	3.57773773540545	4.05130920133648	3.5392376554417	3.59496419415358	3.84669927564132	-0.511398945969347	0.369150878229527	0.753878426844475
Merged-chr2-140790561-4	chr2	140790065	140791065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-119089.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	2.41615553665228	2.44212796924108	2.2311933053085	2.48542615254429	2.44715504002197	2.57252399545324	0.804546772895521	0.340245768760736	1
Merged-chr9-120011263-4	chr9	120010768	120011768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12330.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	6.21081473157139	6.27062484663444	6.36196006794621	5.64768376086779	5.1537162010262	5.44014788181992	-1.54188584060608	2.64477785773001e-06	0.000127242912629836
Merged-chr1-82761776-6	chr1	82761290	82762290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025453, intron 2 of 3)	intron (NM_025453, intron 2 of 3)	6666.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	5.45378652142244	5.3922114326541	6.02197751721514	5.67175877594743	5.50208887835697	5.69558834917292	-0.034994260849403	0.922871739475769	0.982621045978137
Merged-chr5-113624359-3	chr5	113623822	113624822	+	847.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	19281.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.77929235777686	3.52848560340259	3.97125750908669	3.74254910079096	3.53074516687423	3.90108499586319	-0.128683645857963	0.821088096168104	0.957942312428027
Merged-chr4-137913550-5	chr4	137913077	137914077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 2 of 19)	CpG	51340.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.42560683245271	5.12654678154834	5.16802363173165	5.09445030460579	4.9055583729916	4.74918480560019	-0.684350503151002	0.0752354607947148	0.361209828772069
Merged-chr15-86283323-1	chr15	86282823	86283823	+	547.0	f0_balb.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	5648.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	2.50432845335578	2.65231895701197	2.50302001735077	2.5670690162572	2.51610377546088	2.76415202305402	0.327224218259441	0.675228963727321	1
Merged-chr7-28392824-4	chr7	28392316	28393316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026042)	promoter-TSS (NM_026042)	-126.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	6.98718074682847	7.02976669522747	7.10511301240538	6.95771235553309	7.03530377218134	6.98040288749472	-0.068691269248604	0.772817084715659	0.943906349778653
Merged-chr12-34486172-4	chr12	34485651	34486651	+	854.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	42738.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.25540956944401	4.35998410547365	4.3396668053855	4.13257088243404	4.26669077455656	4.27457619977585	-0.248520947686799	0.584066961903299	0.874429518263516
Merged-chr19-6141592-4	chr19	6141091	6142091	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	-454.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	7.48419214703508	7.57677820695236	7.49595599295846	7.50820031063761	7.59263562188292	7.40647495769898	-0.0161529648424558	0.94257095390405	0.987202156853573
Merged-chr14-61803932-2	chr14	61803425	61804425	+	686.0	f0_balb.idr|f1_balb.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-121552.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.80323429565584	3.46073600461683	3.73122088117292	4.02387074761767	3.83106405245494	4.04706327122949	0.945903659018108	0.0834574917160411	0.382354970306593
Merged-chr4-149166714-4	chr4	149166214	149167214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356332)	promoter-TSS (NM_001356332)	-9.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	7.35476901690816	7.79594403382549	7.43641960130659	7.21370575871143	7.49712661841768	7.06144569400656	-0.394660238252405	0.142806314973085	0.50442025114745
Merged-chr18-53312146-4	chr18	53311641	53312641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	66479.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.19608212900838	5.14423964340726	5.13203052040325	5.58852537172496	5.27560045725486	5.16230661751972	0.401983803065561	0.265291414658545	0.663013396735394
Merged-chr6-120159337-4	chr6	120158821	120159821	+	930.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-34502.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.80350064014876	5.95898600859917	5.79236780375249	5.56276300203171	5.36146561748677	5.94762490122675	-0.411356310375037	0.227807193733161	0.622917746842476
Merged-chr5-140748559-4	chr5	140748052	140749052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 5 of 7)	intron (NM_173405, intron 5 of 7)	24425.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.16924826462162	5.2591766659791	5.09471183378316	4.53590076453517	4.47285724707427	4.49807824786907	-1.55058896423232	8.93136474151798e-05	0.00258221333360746
Merged-chr17-63498715-2	chr17	63498215	63499215	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	1865.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	4.62286200541832	4.44203623315416	4.49333877677409	4.20219286925437	4.28034961392415	4.59946518689266	-0.411388125549953	0.360595461563763	0.746795776897206
Merged-chr11-83570401-4	chr11	83569893	83570893	+	818.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8243.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	5.22863916727276	5.24741418341533	5.32610062460605	5.0168584315006	5.1666022985458	5.20200882626455	-0.275944841383081	0.433887733330908	0.798056017818821
Merged-chr14-86678519-3	chr14	86677991	86678991	+	959.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	432521.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	2.73999310915422	2.71517323591904	2.75956310415003	2.4183302983537	2.2623776451601	2.65014614575358	-1.84049139049525	0.0357792492629751	1
Merged-chr11-65787811-2	chr11	65787311	65788311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	CpG	548.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	7.52721478860653	7.38878752033038	7.30920697042865	7.51717323352966	6.73825559750271	7.31044882054259	-0.277433726933589	0.344205026058794	0.732965113456179
Merged-chr19-3322745-1	chr19	3322245	3323245	+	850.0	f0_c57.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-556.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	6.7485985446645	6.74120739363738	7.18993507307404	7.28652465949596	7.51303759112874	7.23589829526962	0.688671834740501	0.00991807040828551	0.0999107509119395
Merged-chr15-73726649-2	chr15	73726149	73727149	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1719.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	5.3885108098454	5.19379296706844	5.59702385159549	5.85923224058962	5.37609602693383	5.2702417695271	0.263277105288025	0.483886758982986	0.826584678003739
Merged-chr1-143702892-4	chr1	143702387	143703387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145991)	promoter-TSS (NM_145991)	6.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	6.57403573988831	6.21765101358389	6.16511556711106	6.36747807544587	6.01102047088901	6.1605570135835	-0.256043986184342	0.401888027429017	0.777823507457637
Merged-chr8-70893781-4	chr8	70893284	70894284	+	918.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029751)	TTS (NM_029751)	-1027.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	2.43362437151629	2.60377559123721	2.64213314990903	2.71122741059037	2.40250628683201	2.77663234813662	0.420202101736923	0.601247824020079	1
Merged-chr6-86572579-4	chr6	86572053	86573053	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	45152.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	4.17325063719228	4.18058572148064	4.21411066688335	4.44008959678535	4.32029587442582	4.37167232037522	0.509369486851846	0.256757440928615	0.653841565257481
Merged-chr1-152021043-4	chr1	152020542	152021542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	69278.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.95096237654849	4.8339935744855	5.04936875023851	5.20125216225048	5.17565664316398	5.04432816898863	0.438463906165618	0.233482611399691	0.629826270159681
Merged-chr2-170322257-4	chr2	170321740	170322740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34121.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.83744276001016	6.98769870283778	6.83573622252464	6.78626852410971	7.00352311711222	6.72318936063511	-0.0610169102592283	0.811557949741135	0.955304895434479
Merged-chr16-55820337-4	chr16	55819837	55820837	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1801.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.23988237229588	7.39409673693038	6.93324438134229	7.20241892883371	7.54077581078963	6.90071446974201	0.063809458724338	0.82550357341883	0.958821343666982
Merged-chr18-56469434-4	chr18	56468873	56469873	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	37241.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	2.93116784364572	3.04166245532904	3.27687508186594	3.14485460918864	3.00509543012997	3.12554549398194	0.0278852124682576	0.966692887358782	0.992349609766636
Merged-chr11-115647601-2	chr11	115647101	115648101	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 4 of 5)	intron (NM_001313936, intron 4 of 5)	-19306.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.21297400048691	3.97479721658974	4.29349015328414	4.21784133859105	4.0697934702815	4.44248623566842	0.22445719498828	0.644310274305912	0.900160672024687
Merged-chr13-60668166-3	chr13	60667664	60668664	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	MLT1J|LTR|ERVL-MaLR	65953.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.2332896219435	5.51357080518924	5.35058662647583	5.06706782823885	5.14458332167762	5.47127268962741	-0.289211427112133	0.42650900517159	0.793840707522572
Merged-chr4-141077871-4	chr4	141077377	141078377	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149724, intron 1 of 8)	CpG	480.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	7.6859435740497	8.05792103223819	7.85939985018678	8.09026365384473	7.93655252249906	7.59167510070993	0.0242074921624842	0.923558245253584	0.982727549942016
Merged-chr16-35766501-2	chr16	35766001	35767001	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	RLTR30|LTR|ERV1	2855.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	4.79293381250593	4.61664775031496	4.54687135097569	4.10274711025811	4.25569176646608	4.44596340890458	-0.998846181539655	0.0257687394692996	0.19034737699974
Merged-chr8-33618040-4	chr8	33617546	33618546	+	858.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 6 of 6)	B3|SINE|B2	18425.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	4.16605077249546	3.82379039565159	3.86826447066365	4.53868541375654	4.46887990527804	4.10211782761122	1.17378968661369	0.0215278181418287	0.169613359714543
Merged-chr18-3008568-3	chr18	3007999	3008999	+	835.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	114913.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.38605411648766	3.97626310251056	3.73532204361567	3.18009476631366	3.02308441760722	4.31342188005448	-0.0555560068042665	0.968167020121709	0.992683467158172
Merged-chr6-134932670-2	chr6	134932170	134933170	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	3578.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	3.82433020718275	3.70705759320905	3.72864996493995	3.82540531475153	3.97885956364233	3.79927755221447	0.386543363437175	0.459948640756339	0.814054033257842
Merged-chr17-8158793-5	chr17	8158102	8159102	+	884.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-6916.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	4.51672509289305	4.78371410611402	4.36605535412935	4.23949668479443	4.60640836227981	4.13930286998847	-0.538541714607838	0.266713059377682	0.664172509867066
Merged-chr14-75193408-2	chr14	75192908	75193908	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-48879.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	5.90908189250079	5.76469425689865	6.01461438737584	6.00133598329925	5.7255256583912	6.07508570712795	0.0680751305134454	0.827395469587141	0.959445425237295
Merged-chr8-14892831-4	chr8	14892320	14893320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	4284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	7.47300152729535	7.60129347796192	7.47943694260834	7.59489354808565	7.8108791452925	7.52617179056784	0.197024084802373	0.392639375191811	0.771214636708298
Merged-chr2-116980697-3	chr2	116980203	116981203	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80551.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.95295183672826	4.72516286944211	4.69872535393226	4.65691438477217	4.9276849890978	5.02298494807174	0.164654550319541	0.684611029653765	0.915930759709583
Merged-chr16-57547444-4	chr16	57546908	57547908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1834.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.27244403913651	7.27527956316497	7.42575742118432	7.17483373075069	7.34514407380174	7.15602583544284	-0.131586129524905	0.576343278556858	0.871585692229598
Merged-chr2-160613846-2	chr2	160613346	160614346	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32051.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.47271817233545	3.69229403672147	4.04807654450947	3.31588360541996	3.51625531521785	3.65483957264109	-0.868921877524212	0.154518212886959	0.523840916635353
Merged-chr1-60745840-3	chr1	60745369	60746369	+	801.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-519.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	2.57862054897585	2.58785965462543	2.59581180972804	2.37909283089458	2.42880702064436	2.27339413382388	-1.39544024981993	0.101312600513723	1
Merged-chr1-165683536-4	chr1	165683039	165684039	+	765.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	B3A|SINE|B2	24555.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.46760399384563	5.46432143108907	5.35936063493654	5.26592566549864	5.36098945531177	5.29665853558636	-0.244047496766059	0.467104916119094	0.817784491371879
Merged-chr18-62048857-2	chr18	62048357	62049357	+	945.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	95782.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.71669356939482	3.73812995365776	3.68975382687781	3.55161396199271	3.67042555201644	3.75944229215141	-0.188875044588991	0.726937974549064	0.930086065338964
Merged-chr8-11454579-2	chr8	11454079	11455079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-23350.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.87766713821163	4.86971141467963	5.44103240140658	5.01252319865065	5.18745042321135	5.7904490911635	0.573272135126353	0.190946390617098	0.577487433640144
Merged-chr11-57980495-4	chr11	57980009	57981009	+	897.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28555.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	4.36826202828771	4.11959016902699	4.3928683341108	4.27263915061994	4.24407195041833	4.33130792096953	-0.0375664388248602	0.93466294263659	0.985727536128156
Merged-chr4-141623948-4	chr4	141623431	141624431	+	979.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013780)	promoter-TSS (NM_001013780)	-97.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	3.25537236625917	3.79989729335756	3.44554330412145	3.32619817428797	3.27982129954333	3.51689404483849	-0.566083641391958	0.371698739741784	0.755815136565724
Merged-chr8-14643246-4	chr8	14642733	14643733	+	983.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-245303.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.86883667100376	3.55379560013543	3.37009189458906	4.0247146307739	3.70185458731628	3.89492076287183	0.834364837882949	0.162347640664947	0.53582993535478
Merged-chr2-30980858-2	chr2	30980358	30981358	+	599.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144885, intron 2 of 8)	B1_Mur4|SINE|Alu	1083.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	4.67997591655712	4.3597881552322	4.87349923481436	4.82738145813612	5.17122821138327	4.90261080362925	0.766980583861554	0.0719306301677059	0.352260848010245
Merged-chr11-106658571-1	chr11	106658071	106659071	+	724.5	f0_balb.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-45641.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.2058854802868	5.77776648364777	5.85603354589353	5.83911525375578	5.82110083503177	6.03458622407613	-0.123803699700429	0.69790526929376	0.920123730782958
Merged-chr11-74830438-4	chr11	74829940	74830940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-484.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.64333023303906	8.31866131264835	7.86680407866623	8.26404755995661	8.52383206220333	8.08261367519373	-0.0210549644891474	0.939702770153406	0.986731489878728
Merged-chr2-167497478-4	chr2	167496945	167497945	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	B3|SINE|B2	-4571.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	6.96264314644957	6.93237935078526	6.47674694541249	6.8116081585354	6.97474731418045	6.35355908267666	-0.102967955671662	0.738801578066931	0.93410222770955
Merged-chr15-37973890-2	chr15	37973390	37974390	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 54 of 58)	intron (NM_001112721, intron 54 of 58)	-12835.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	5.27937985952835	5.07837342951108	4.9151150788955	5.08460587268284	5.02021459906122	4.98121590329909	-0.164721525659772	0.660255498438097	0.905906890165946
Merged-chr4-144893591-5	chr4	144893153	144894153	+	907.0399779999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001172424, exon 2 of 7)	exon (NM_001172424, exon 2 of 7)	516.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.60973473561151	7.27695948176374	6.8247927209402	6.65177645472236	6.83684571950178	6.57280963577374	-0.37814419295624	0.208255824258477	0.599129468377008
Merged-chr4-3677376-4	chr4	3676910	3677910	+	905.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-711.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	6.31203915907387	6.5356593154317	6.40142113464373	6.90859468079274	7.06289664619166	6.75745206534896	0.791049081503685	0.00292385956318279	0.0413484398941894
Merged-chr19-6296758-4	chr19	6296237	6297237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-9720.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	7.34506082641424	7.27871651576947	7.39512064495355	7.37252802137202	7.59487961497309	7.18695800496665	0.0999788056954819	0.681930234357919	0.914908045004202
Merged-chr4-141735103-4	chr4	141734603	141735603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11572.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	4.24156887029985	4.5087733995749	4.70329939072645	4.47934554262291	4.53365127568196	4.69413940817261	0.193648212302819	0.662706546986535	0.906804932599005
Merged-chr15-25891213-2	chr15	25890713	25891713	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 2 of 8)	intron (NM_001034851, intron 2 of 8)	-42339.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.88353221657763	5.15762278807765	4.84656656608195	4.7133529353532	4.80496191645441	4.87456391473933	-0.402102305536414	0.306723109309998	0.702981130880964
Merged-chr7-19700546-2	chr7	19700046	19701046	+	875.125	f1_balb.idr|f1_c57bl6.idr	TTS (NM_016871)	TTS (NM_016871)	-1358.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	5.39629300959743	5.65348938842022	5.8537055105688	5.52936788431719	5.68709335169154	5.37860457926344	-0.171470555967454	0.620624244215382	0.890240100691087
Merged-chr9-44325405-3	chr9	44324884	44325884	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1461.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	3.64022474961423	3.57729249322569	3.91503526633538	3.76932454356539	3.79259497860392	3.68513297626873	0.143676577217668	0.792344914853027	0.949929758256028
Merged-chr1-191874604-1	chr1	191874104	191875104	+	629.0	f1_balb.idr	Intergenic	Intergenic	-32177.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	3.25710534681007	3.54805090990118	3.60573428060594	3.19132690657552	3.42026848569441	3.62494653144019	-0.208564287762061	0.739230064171478	0.934189741955566
Merged-chr11-87444347-2	chr11	87443847	87444847	+	663.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B1_Mm|SINE|Alu	16756.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.64779651854272	4.70476161555384	4.45680742839654	4.21252828900345	4.45235284265396	4.60707372405224	-0.457838442917201	0.300796424272338	0.697546580944028
Merged-chr7-141444115-4	chr7	141443622	141444622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360523)	promoter-TSS (NM_001360523)	-97.0	NR_153591	57913.0	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	5.22018778660547	5.46920658881762	5.72250165685196	5.35008980973299	5.62639634270264	5.60547846393335	0.111209104202318	0.75359420730495	0.938563718495545
Merged-chr15-96758034-4	chr15	96757561	96758561	+	963.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58333.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.5524961913182	4.62505661134784	4.30354775047195	4.31027250101554	3.92720644232431	4.37204384085062	-0.792292523678416	0.0998101256374547	0.421317011670116
Merged-chr6-86547468-3	chr6	86546949	86547949	+	789.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20048.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	5.26113427981961	4.48661742612713	4.84363427040131	5.80793380752213	6.04873274806276	4.95690960699083	1.50881102077074	0.044775957237107	0.266801000828784
Merged-chr6-42373074-4	chr6	42372487	42373487	+	910.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023580, intron 1 of 17)	intron (NM_023580, intron 1 of 17)	281.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	2.98319988837253	2.87521280336414	2.93070654003732	2.88762833103019	2.71018759469715	2.81967584923504	-0.631077138813307	0.372597250749424	0.756430782227054
Merged-chr16-58727926-4	chr16	58727417	58728417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_171826)	promoter-TSS (NM_171826)	7.0	NM_001252451	224250.0	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	6.44830317924748	6.07868388886528	6.19122030992587	6.53095405824338	6.14198521020882	6.46446785406194	0.217760038371356	0.471257343454678	0.819917078029108
Merged-chr6-98113901-4	chr6	98113406	98114406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122123.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.03258920151644	4.06850175371359	4.32911401374076	4.20406350085006	4.083866460431	4.08305572094443	-0.0448670611819049	0.925698666218371	0.983266386206129
Merged-chr17-35213995-2	chr17	35213495	35214495	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8644.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	3.1632284484236	3.16812579794511	3.48541495530714	2.9234549553725	3.24400209556566	3.34899754005281	-0.37931019285004	0.575941556498481	0.871468877327664
Merged-chr11-83078227-4	chr11	83077743	83078743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13131.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	6.87416280339395	6.64882746682542	6.91271591926387	7.05801222389632	7.17206668056211	7.05195350656026	0.439310265429429	0.077670429976053	0.36781066174079
Merged-chr15-53345640-4	chr15	53345100	53346100	+	856.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010162, exon 1 of 11)	5' UTR (NM_010162, exon 1 of 11)	583.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.58236345827497	7.0132491918245	6.94003642933469	6.49691937602526	6.47859294343808	6.91785032766481	-0.344628663892481	0.238033058512231	0.634592122414717
Merged-chr10-34280779-4	chr10	34280293	34281293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1397.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	6.5449873996433	6.62284922732671	6.11532822991715	6.83227753890232	7.22278172864456	6.33777919659685	0.637173253116854	0.0616337816741949	0.322096703023892
Merged-chr15-78614973-1	chr15	78614473	78615473	+	804.0	f1_balb.idr	intron (NM_028195, intron 8 of 12)	intron (NM_028195, intron 8 of 12)	17926.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	2.68928295140684	2.82573695861487	3.22909794150803	2.90190636906832	2.46170808465998	3.19560087534809	-0.187876078405259	0.827127500846943	0.959351941492659
Merged-chr11-107339581-4	chr11	107339104	107340104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	131116.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	7.0300632605831	6.737902436529	6.63988965057518	6.91471678399841	6.96348942166574	6.78105432305789	0.112074185109791	0.671860508698155	0.910694246658612
Merged-chr7-43444036-4	chr7	43443543	43444543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-29.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	7.55005388466389	7.80643155980203	7.75657250694224	7.49981888214103	7.77195892902107	7.81308066679899	-0.00955011434488573	0.967685445034914	0.992581088872982
Merged-chr11-117969236-4	chr11	117968726	117969726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007707, exon 1 of 2)	5' UTR (NM_007707, exon 1 of 2)	140.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	7.27281783733702	6.704088869631	6.67434457848689	6.8725111435211	6.65765313674954	6.9029367245317	-0.172931052920147	0.559592438941204	0.865001482687873
Merged-chr5-64289425-4	chr5	64288914	64289914	+	983.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59057.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.40936193097594	4.65390293532612	4.63715658673711	4.19307891000829	4.37106742443977	4.28238658132397	-0.71949818487509	0.107566603432504	0.438079484039538
Merged-chr11-5740771-4	chr11	5740279	5741279	+	925.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	CpG	397.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	7.07496956799848	7.1905465335742	7.04184275579938	7.53506950155601	7.33028701531665	7.43009618393635	0.483858320830319	0.0395511050033144	0.247146225744187
Merged-chr19-12443326-1	chr19	12442826	12443826	+	767.0	f1_c57bl6.idr	Intergenic	Intergenic	15421.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.271454140771	7.47931333215628	6.93803887871616	7.05099191555969	7.41355392227029	7.13412714473764	-0.0639769742760339	0.815381099239336	0.956370078970016
Merged-chr8-75091303-2	chr8	75090803	75091803	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2315.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.75174487549959	3.58503059135861	3.47509660913849	3.67819590076382	3.80959923040824	3.91601612417805	0.623580992560011	0.261962110206484	0.659805765409285
Merged-chr6-22351445-2	chr6	22350945	22351945	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	4636.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	2.59452992134821	2.58873427488978	2.69156021027101	2.79962177691611	2.48213528572312	2.76519483269948	0.343472209993603	0.655502180790405	1
Merged-chr3-38013109-4	chr3	38012566	38013566	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114253.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	3.09775410231882	2.7919886112997	3.11527066682465	3.14817396874449	3.21196889623605	3.18742079914628	0.783720046434182	0.249614087308388	0.646593891313006
Merged-chr3-69182572-4	chr3	69182083	69183083	+	925.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39836.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.15419572176552	4.68917896792845	4.4253592651264	4.0562489508696	3.96657296075503	4.10156418003346	-2.00244929094791	5.36714888943349e-05	0.00167764735083389
Merged-chr6-87500437-4	chr6	87499937	87500937	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-4110.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.3097234016244	7.3598971142131	6.79129452332782	7.1631882223137	7.36928407952783	7.17821547784843	0.0805387013194896	0.767508517104738	0.942617496111852
Merged-chr13-37537506-3	chr13	37537013	37538013	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	192168.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.40153668375124	3.57110134475571	3.7638829342586	5.25436472662687	5.18987506836133	4.81455216736767	5.07801406169089	5.56151080412447e-13	1.12048956656075e-10
Merged-chr19-16033491-2	chr19	16032989	16033989	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	48414.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.33541601820687	4.54500418300575	4.39786797154642	4.73564167857405	4.83808410704797	4.51155435087048	0.678940161910016	0.114579350227254	0.452032914562748
Merged-chr14-45179809-4	chr14	45179303	45180303	+	919.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 7 of 20)	intron (NM_001310534, intron 7 of 20)	39622.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	3.08214721527527	3.1029999622157	2.97729588015592	2.90075336771363	2.86183264333865	3.04985238278266	-0.582922362375853	0.390836149322572	0.769975715333663
Merged-chr10-69309297-4	chr10	69308783	69309783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43629.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	5.5420836681304	4.89694557713024	5.21530375975632	5.52347541562355	5.1819007246227	5.31199024201551	0.190997976301539	0.628699846904098	0.893843196694402
Merged-chr10-121376062-4	chr10	121375550	121376550	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10960.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	7.89603627757434	7.80981009799798	7.47774765249638	7.75986450307526	7.82053509297106	7.61585522348329	-0.0132317261601327	0.95583644733067	0.989783387008628
Merged-chr8-14233189-4	chr8	14232685	14233685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 2 of 15)	intron (NM_172910, intron 2 of 15)	137310.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	3.04451442436276	2.99466852694226	3.25470980709578	2.95189758821958	3.08174853564909	3.04373688514035	-0.306302870992529	0.646570966970626	0.90100465546023
Merged-chr11-53805966-4	chr11	53805472	53806472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	35499.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.45715164683261	6.30784820974035	6.1222021996497	6.44183534545105	6.6946334578827	6.08981283204262	0.224315506911259	0.469773329387635	0.819126978705139
Merged-chr7-142068758-3	chr7	142068267	142069267	+	921.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7733.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	2.11262150027142	2.14095966785813	2.24503773776186	2.13049101350905	1.88222928532999	1.91130930790474	-1.50283941574488	0.131582349169881	1
Merged-chr2-166713965-4	chr2	166713481	166714481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177782)	promoter-TSS (NM_177782)	-149.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	8.02835729833506	7.71040948970302	7.88453556959995	7.91782512089577	8.0335131180718	7.53243540450751	-0.0385821976753147	0.877612282413883	0.971669595710979
Merged-chr1-7088911-4	chr1	7088428	7089428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	8.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	8.00294690696431	8.32967846019636	7.81479569754549	7.87275576230643	8.21859792161808	7.68036981295087	-0.171411240547343	0.521522016156442	0.84708604060785
Merged-chr16-33966356-3	chr16	33965878	33966878	+	765.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009471, intron 1 of 5)	intron (NM_009471, intron 1 of 5)	660.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	6.20980983754264	6.18674308599907	6.09554940576661	6.07664825912673	6.17131017877026	5.8149633616672	-0.214230870358977	0.46907840175246	0.818883765302854
Merged-chr1-43098601-4	chr1	43098110	43099110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133818)	promoter-TSS (NM_133818)	18.0	NM_001013025	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	8.80253324669264	9.03678638901804	8.62607802872819	8.78818477623308	8.99255450560955	8.66564808676433	-0.0146979879332164	0.948389052050831	0.988111778104233
Merged-chr4-155803598-4	chr4	155803116	155804116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025570, exon 2 of 5)	5' UTR (NM_025570, exon 2 of 5)	738.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	6.03690105482921	6.31770282321091	6.53692968784324	6.24502903595844	6.46438397240722	6.44161386394267	0.138706282319603	0.639988018788652	0.898255496259518
Merged-chr16-18066375-4	chr16	18065878	18066878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289813)	promoter-TSS (NM_001289813)	-25.0	NR_110380	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	5.71710604724462	5.35325232844613	5.70680854649486	5.53834891662338	5.20249124378011	5.86303261005966	-0.0935930540095497	0.802149216067391	0.953161751100363
Merged-chr11-114915720-2	chr11	114915220	114916220	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18666.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	7.56841738313754	7.33215835210419	7.34341568023282	6.86996909803567	7.18965351452385	6.96556522543735	-0.596348807233185	0.0176735867833955	0.148816855055354
Merged-chr1-152573865-4	chr1	152573362	152574362	+	890.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51355.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.22114040418096	6.14491904262101	6.09904734861096	6.18625905934953	5.99904678479057	5.95125879761295	-0.183061084036846	0.525196948713199	0.848884765122919
Merged-chr1-58802522-4	chr1	58802013	58803013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	11.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	6.99910196542085	7.20178972019851	7.304652116757	7.20938260150278	7.30369961610383	7.31795153397845	0.161549791586502	0.50150547098079	0.83578888057542
Merged-chr19-29523857-2	chr19	29523357	29524357	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 1 of 25)	intron (NM_001081319, intron 1 of 25)	1575.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	4.32076181396034	4.3700073141301	4.31356641592468	5.02604427775506	4.93796396718459	4.52494116690108	1.25515510217532	0.00403966091587452	0.0522933073937013
Merged-chr15-77839672-6	chr15	77839198	77840198	+	922.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	2477.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.65141701472852	6.64304939214118	7.01418333992704	6.97248083139547	7.05856386934681	7.28312423767092	0.515244714819656	0.0534957906023476	0.296554146864766
Merged-chr1-24469699-4	chr1	24469159	24470159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	117778.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	5.85907081396389	5.79529905110423	5.8793988119093	5.98108569706103	5.78352938257502	5.91669114181904	0.0871571511666508	0.771658290670668	0.943614978016208
Merged-chr12-34712680-3	chr12	34712199	34713199	+	739.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	MIR|SINE|MIR	-183810.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.27556061306679	6.35123707959391	6.11442774268334	6.27309392701333	6.37833700992811	6.30194973853661	0.103658566419616	0.708331528854092	0.923684652799343
Merged-chr10-43752215-4	chr10	43751722	43752722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	6064.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	5.19112383285799	5.06927277784859	5.23085775782702	5.61668265094121	5.74228417403006	5.36067605106993	0.848648749547314	0.014463603563578	0.129449018534818
Merged-chr10-40073808-4	chr10	40073317	40074317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	RSINE1|SINE|B4	-48549.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	6.7359963640459	6.90389463604592	6.56821088387396	6.18450572477457	6.48185237354352	6.3491336181955	-0.642167595175064	0.021197207772516	0.167787030473317
Merged-chr17-29032588-4	chr17	29032104	29033104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-56.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	9.00593513410412	8.97502457528893	8.3884278153998	8.71268312708958	8.84676428995345	8.64913503609245	-0.118025582784836	0.633664186571448	0.896059441151508
Merged-chr11-20648194-2	chr11	20647694	20648694	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021372, exon 2 of 2)	exon (NM_021372, exon 2 of 2)	16217.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.53866055784081	2.33261037803114	2.49614312804841	2.49650858807035	2.50168247513145	2.63260353276618	0.508164505148038	0.524400433900089	1
Merged-chr3-139065107-2	chr3	139064607	139065607	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	10094.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.08790388300335	5.30438870823879	5.17715474324687	5.47817031150236	5.43247838706163	5.91166467684022	0.813399736808266	0.025006442697584	0.187026167402899
Merged-chr16-91789915-4	chr16	91789402	91790402	+	992.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 4 of 15)	ORR1D2|LTR|ERVL-MaLR	60531.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.56695128506621	4.40424096049598	4.40890029639347	4.2638896870966	4.17222492124919	4.43334248503763	-0.470968907805661	0.293095726786594	0.690159101850425
Merged-chr10-111540180-4	chr10	111539669	111540669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33883.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	5.17334864908199	4.7850089093552	5.27427087012733	4.90818762225377	4.59969457413504	4.95319161244909	-0.582611621199038	0.158848782845106	0.530664892540681
Merged-chr19-12025517-2	chr19	12025017	12026017	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	11223.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	2.34484164511544	2.54261201833069	2.41428825608752	2.65823926747957	2.31612218142935	2.61871632650714	0.590406503112974	0.479798425562702	1
Merged-chr4-133744825-3	chr4	133744377	133745377	+	706.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 1 of 19)	PB1D9|SINE|Alu	8734.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	5.91040428411095	5.95004664471564	5.91377921042578	5.02310159375237	4.53842068224192	4.95326866026683	-2.18212072144373	3.79463237448529e-09	3.79956402666873e-07
Merged-chr18-62985455-4	chr18	62984977	62985977	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	intron (NM_028017, intron 5 of 11)	7561.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	6.2605938125453	5.96035693266742	6.11595645367409	6.56256069100496	6.69270640807877	6.1317468737563	0.624506135093248	0.0422582208386579	0.257560946348011
Merged-chr11-19965085-2	chr11	19964585	19965585	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	40643.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.30371791352693	4.81755933698372	4.79044838980562	5.00734939408988	4.68069786593027	4.89602476419705	-0.30060602768805	0.474457063616022	0.821461606553651
Merged-chr6-56653309-4	chr6	56652828	56653828	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51371.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	3.19288732761053	3.28184549741266	2.97386652089753	3.06198605585315	3.11905197992363	3.22645432672846	-0.118473320766919	0.857998447386003	0.966785186918462
Merged-chr5-113777060-4	chr5	113776583	113777583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025526, intron 4 of 4)	intron (NM_025526, intron 4 of 4)	4271.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	7.17840186205744	7.10858663666958	7.10400098234804	6.88583629712181	7.0342242125828	6.76429113683036	-0.33950975301329	0.167174225517773	0.542817176183676
Merged-chr12-79626887-4	chr12	79626383	79627383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297850.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	7.06996819598648	6.66933600892713	6.90804426936117	6.7219096906351	7.09755591172484	6.95231477861974	0.0687207457434979	0.801826840124986	0.953086016975963
Merged-chr1-128724710-4	chr1	128724198	128725198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-132399.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.04721175435757	7.07209350678666	6.75583544341772	6.57342882468083	7.00374679571959	6.64919178971881	-0.317913577661526	0.253976324228018	0.651117231535132
Merged-chr6-90550716-4	chr6	90550212	90551212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027406)	promoter-TSS (NM_027406)	-81.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	5.23480241380878	5.30046828365748	5.11070388864909	5.30793565786739	5.20511184048389	5.105091237804	-0.0239992347641994	0.945921339572565	0.98796006280508
Merged-chr15-63494712-3	chr15	63494209	63495209	+	997.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15101.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	2.94380755495275	3.00997085383581	2.97077088389132	2.51972202422272	2.54805798716092	2.67594502354398	-2.32162423908465	0.00401539868373773	0.0520668994353201
Merged-chr12-105033358-4	chr12	105032838	105033838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028419, intron 1 of 1)	intron (NM_028419, intron 1 of 1)	720.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	6.80223023402326	6.81938865685112	6.48625984456611	6.55542373210981	6.41630245387159	6.47168329374516	-0.383105956800534	0.154700589299408	0.52390421792532
Merged-chr8-73314076-4	chr8	73313564	73314564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	39476.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.69787323327478	3.53057608202905	3.69299924069344	3.46202172498773	3.54462601893711	3.81110781808123	-0.116197731378416	0.837572078749598	0.962141375366527
Merged-chr18-60732162-3	chr18	60731628	60732628	+	603.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	L2b|LINE|L2	1013.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.97599317977736	5.6790833095304	6.07560453927225	5.99907218550347	5.89400737083225	5.83600126823985	0.00153034109830572	0.996087568747887	0.998961028701257
Merged-chr2-27400238-2	chr2	27399738	27400738	+	702.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	27370.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.94652007819166	3.73943120081821	3.79105420619896	3.85467545950354	3.49533672688456	3.70403906656408	-0.465909499527929	0.398874411033946	0.775456588628799
Merged-chr2-165990698-3	chr2	165990179	165991179	+	697.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.11508230562876	4.03890572690202	4.42285807964344	4.12983428503168	4.38766268234073	4.52788700305416	0.43779372502063	0.363731614725694	0.749321188432902
Merged-chr11-8584530-2	chr11	8584030	8585030	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	80005.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.36994910162835	3.02825471040099	3.41549225119294	3.38089858935356	2.81757734665941	3.14993922720366	-0.589715412784316	0.415084148283584	0.786136540436176
Merged-chr11-114765350-4	chr11	114764837	114765837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-52.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	5.04023217652756	4.72993901788246	4.7850661866026	4.8850726721397	4.6696881214555	4.56033756636855	-0.334089162018537	0.418449828474757	0.788591657834186
Merged-chr9-75630872-4	chr9	75630368	75631368	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027309, intron 1 of 2)	intron (NM_027309, intron 1 of 2)	5136.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	4.49563577207534	4.62656236023251	4.6443470709188	5.40159333362503	5.16106457540693	5.45598665467415	1.6380929183876	2.63554181801118e-05	0.000922972068994419
Merged-chr6-65042713-4	chr6	65042191	65043191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	100.0	NM_001355249	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	8.01970486289473	8.31347671360032	7.65866042003351	8.05907098891466	7.73038118078635	7.54437608387834	-0.331214409249439	0.232750661800314	0.629034593578034
Merged-chr2-27768557-5	chr2	27768066	27769066	+	945.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57983.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.83502310031155	5.59344071094001	5.57462940369052	5.46138506613424	5.56811288806187	5.33172409596895	-0.39648967747778	0.234138390819336	0.63036877369004
Merged-chr5-43872050-4	chr5	43871554	43872554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	3245.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.31197438453801	6.26278131991199	6.67101259092909	6.72505981406644	6.57353931612966	6.55026698729115	0.327743833959523	0.242419531720083	0.639524567875613
Merged-chr16-44199214-4	chr16	44198708	44199708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 3 of 7)	intron (NM_001029889, intron 3 of 7)	25811.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.76058304963214	5.78745919671036	5.64449137415165	5.37433624717856	5.48009714166882	5.5099507172351	-0.528342581363021	0.0981418265099258	0.417592737722191
Merged-chr5-117889204-2	chr5	117888673	117889673	+	663.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	B4A|SINE|B4	22334.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.9100395762218	5.07345999837623	5.40674844196966	4.95863463391045	4.80811702425662	4.82451149752607	-0.581691710075633	0.141613252609736	0.502295729705056
Merged-chr5-64232803-2	chr5	64232303	64233303	+	890.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	2446.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.4450866555208	5.81057295066874	5.60266405804933	6.27390597795277	6.31100046477912	6.00593559846664	1.01470213481831	0.00138144290400662	0.0232028867897825
Merged-chr8-124948973-2	chr8	124948473	124949473	+	777.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053207, exon 1 of 5)	exon (NM_053207, exon 1 of 5)	281.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	3.99470450177906	3.85170966351503	4.14286048959665	3.87000362670797	3.76520024928128	3.93578690526605	-0.44116015542641	0.389510304715622	0.769203119372908
Merged-chr6-84040132-2	chr6	84039632	84040632	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	(TC)n|Simple_repeat|Simple_repeat	20746.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	3.73826427044244	3.44035532614701	3.82877029410838	3.6853368131621	3.31773944701595	3.6494858440928	-0.414087270428054	0.488188296166536	0.828998794069485
Merged-chr11-46833552-3	chr11	46833045	46834045	+	831.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	MTC|LTR|ERVL-MaLR	22746.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.1215146435782	6.03976963511396	6.43661503138847	6.43266027986963	6.22484521880948	6.54657297080463	0.333124592127586	0.260918725552573	0.658521360261207
Merged-chr2-27539772-3	chr2	27539218	27540218	+	801.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	24571.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	7.60431927848924	8.1254042350454	7.38178681318766	7.61808904914856	8.13805520096605	7.17578480053686	-0.0491656107078491	0.884048995207679	0.973466734537782
Merged-chr6-85961244-4	chr6	85960754	85961754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028099, intron 1 of 8)	CpG	413.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	8.60795050648358	8.98755650345137	8.52198135339494	8.50232783687749	8.64338935305263	8.57729598808475	-0.20843452946004	0.361551269677783	0.747427529126683
Merged-chr8-117368810-2	chr8	117368310	117369310	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	19640.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.35019015841419	3.29205183851032	3.48765946357183	3.46255224613172	3.1987791402547	3.33982651777194	-0.154706415007472	0.799753455005905	0.952280212549411
Merged-chr17-24720781-4	chr17	24720295	24721295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	6.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	7.57033735182923	7.89677037754317	7.41233279471511	7.17483878198139	7.68511569771746	7.48003710039795	-0.26276822106593	0.333915649334783	0.724647993058489
Merged-chr6-123170390-4	chr6	123169896	123170896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-2627.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	5.4767981881777	5.6494962936785	5.76773533024396	5.63740361501805	5.80075141908084	6.09646811268675	0.399679929812911	0.227116008682047	0.622213514105616
Merged-chr10-10477202-2	chr10	10476702	10477702	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4888.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.63004456491389	5.60293578456728	5.38706573035934	5.76940538409828	5.95445685851286	6.0304135108482	0.664219155858544	0.0375879987903084	0.239676496717297
Merged-chr15-30605899-3	chr15	30605412	30606412	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-433214.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	2.88566981415531	3.3818610730143	3.0187244939545	3.28762551854197	2.9533497290722	3.21284226645822	0.165314425454239	0.817020789216291	0.956754861188725
Merged-chr2-91052154-3	chr2	91051657	91052657	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-1859.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	4.61743946061994	4.69610114181862	4.80255491492581	4.80969073428794	4.39735191383812	4.79418026139238	-0.0759784827197428	0.858660199612359	0.966955810598941
Merged-chr10-117709112-4	chr10	117708616	117709616	+	738.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1642.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	5.2081268122063	5.20589888525996	4.92597306872713	5.40337578428232	5.36492907742277	5.17728609183637	0.392212763376126	0.278416241411614	0.675623815920472
Merged-chr6-67129143-3	chr6	67128525	67129525	+	767.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91618.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	2.06793412304771	2.13999468336719	2.27892913637388	2.11177238671835	1.86779101971237	2.15940395205706	-0.864505530531842	0.36977671347039	1
Merged-chr9-58248976-4	chr9	58248490	58249490	+	930.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008884, intron 1 of 7)	intron (NM_008884, intron 1 of 7)	796.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	6.89227585347039	7.09287030430072	7.18696543394782	7.40585245209297	7.60640026673796	7.07935784452289	0.497835573518086	0.0604400699414327	0.318397557992229
Merged-chr7-127129844-4	chr7	127129343	127130343	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7814.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	4.36031127749119	4.03954492487697	4.44014062248776	4.78776217193852	4.59605034380386	4.70855957202195	1.04067350032518	0.0204324524406169	0.163754562140093
Merged-chr12-99562930-2	chr12	99562430	99563430	+	875.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-911.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	7.47694844607404	8.05665612795698	7.42276131555958	7.59859703747065	8.22931383946775	7.78219998221679	0.302301112485791	0.314794273564708	0.709090105815759
Merged-chr11-111097306-2	chr11	111096806	111097806	+	902.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31142.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	5.39055811272363	5.40025202869067	5.2606297354811	5.52451591271742	5.6314956308355	5.32521865950554	0.295745051981482	0.383665764102216	0.76494131641868
Merged-chr7-120984056-3	chr7	120983554	120984554	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	1545.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	5.32278284535585	5.29092855728072	5.25335354281073	5.07122448351189	4.92390370669129	4.85617647058535	-0.699247008884389	0.0535427230803876	0.296755005799833
Merged-chr11-101959993-4	chr11	101959504	101960504	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045806, exon 4 of 4)	non-coding (NR_045806, exon 4 of 4)	7011.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	4.34255145980938	4.03332517227634	3.9767009969684	3.9963321386921	3.77423613871985	3.94533443177842	-0.683633748316866	0.182639049380859	0.565440922476101
Merged-chr9-53700970-2	chr9	53700470	53701470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5262.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.53312212610476	6.78715150282833	6.54892947551522	6.76624180095829	6.97277785548532	6.60834868719942	0.263504457759922	0.332887238052631	0.723927708416112
Merged-chr4-83407972-3	chr4	83407431	83408431	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-9793.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	3.05218625989838	2.74396593815427	3.02898949516117	2.7366165953911	2.80261651989626	2.73808139445733	-0.93353594288349	0.204851820884247	0.595546000502448
Merged-chr9-66615283-3	chr9	66614785	66615785	+	693.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22170.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	4.16701805337752	4.06494431939295	4.17505455727374	4.08426562882203	3.96880836809771	4.10458303967849	-0.246973260375814	0.605192799331986	0.883454078014314
Merged-chr19-6996983-6	chr19	6996416	6997416	+	869.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026675)	promoter-TSS (NM_026675)	785.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	4.32265895783619	4.09932666211443	4.72445511143323	4.70301533613614	4.60327402249269	4.55946398115823	0.570993682516089	0.219503408265285	0.613724448754633
Merged-chr11-120574370-2	chr11	120573870	120574870	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1117.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	7.90582292504717	7.9594372785385	7.59246089818552	7.58719028720671	7.92743476595359	7.48509611643852	-0.208760176034164	0.411014579907059	0.783785606749474
Merged-chr10-81291738-4	chr10	81291233	81292233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282095)	promoter-TSS (NM_001282095)	-152.0	NM_001282095	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	5.4156785445208	5.41585449204337	5.20093270924579	5.21543919091658	5.3245854532607	5.29798245145152	-0.148974760233679	0.665586845581383	0.907855843812957
Merged-chr13-97196351-2	chr13	97195851	97196851	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	2006.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	3.86313315720916	3.83462799791841	3.94398268786919	3.73126239447649	3.70394067865816	3.91695542020134	-0.314532627709692	0.545153049511564	0.858022867644432
Merged-chr2-173760785-2	chr2	173760285	173761285	+	779.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	23214.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	2.53405784258069	2.45828500086672	2.79055108520206	2.38781307260297	2.21424438469848	2.56613845848847	-1.28036655489281	0.140317690097805	1
Merged-chr2-90546010-2	chr2	90545489	90546489	+	764.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	34658.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.66926643585935	5.98275222974155	5.89142049130632	6.60698909188665	6.49724735475039	6.75846997398495	0.611610423432569	0.0735310363544708	0.35633769386571
Merged-chr5-148741853-3	chr5	148741322	148742322	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028285)	promoter-TSS (NR_028285)	-18.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.32228898905876	4.10194878947833	4.44299313777351	5.06010448211577	5.50823916024418	5.37281862137454	2.42697140056573	1.6336850826875e-08	1.40803743427696e-06
Merged-chr2-129298501-4	chr2	129298089	129299089	+	703.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040371, intron 1 of 4)	RMER15|LTR|ERVL	1219.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	4.77967019752665	4.89444436977206	4.9570434421557	5.25471650072935	5.26752002246323	5.25765875086423	0.816758391429202	0.0242735161011219	0.183424326177483
Merged-chr2-37452150-4	chr2	37451668	37452668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-86.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	7.06669468563154	7.02307786340538	6.88494523756127	6.8563602953583	6.86820890619241	7.02589680382314	-0.130262084726735	0.595503705689437	0.879549293510723
Merged-chr2-165287787-4	chr2	165287266	165288266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	21.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	6.62598273407842	6.9158332179687	6.73618946040954	6.72002517287655	6.8583294517061	6.69914716521491	-0.00239434146613504	0.992659783906846	0.998523796268552
Merged-chr17-36135944-4	chr17	36135444	36136444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6519.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	4.75951466691929	4.64332121663715	4.6740096081841	4.36077968448777	4.23126882493297	4.21779146239318	-1.07024755973376	0.0137339739868585	0.125166603047722
Merged-chr6-65141587-2	chr6	65141087	65142087	+	797.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	B3A|SINE|B2	3143.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.33534322387248	6.67068108133424	5.87816372650608	6.25957096769228	6.46164962326485	5.8868186832475	-0.184962712716194	0.601027920754053	0.881855262262798
Merged-chr6-81957218-3	chr6	81956718	81957718	+	734.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026490)	TTS (NM_026490)	8731.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	4.3753786424842	4.16287369538727	4.28344664018755	3.39821084282251	3.53929216256431	3.55266204903735	-2.61273757203256	7.54078772019844e-06	0.000314317561435569
Merged-chr11-87462920-2	chr11	87462420	87463420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	35329.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.55023599732917	6.76390078031136	6.34893618504064	6.25362692034552	6.32186460968058	6.13273984736825	-0.538211065190028	0.0591948269453662	0.315069606631486
Merged-chr4-132345729-4	chr4	132345257	132346257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197082)	promoter-TSS (NM_001197082)	-7.0	NM_133878	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	6.61348940900421	6.28850006356238	6.01313108857035	6.59439607306999	6.43582385417957	5.97366616180142	0.0514668600793728	0.877618219354664	0.971669595710979
Merged-chr7-101374320-3	chr7	101373807	101374807	+	755.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 3 of 33)	intron (NM_001040111, intron 3 of 33)	-3815.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.51089953160526	3.21974358327597	3.69360971209525	3.17164775561367	3.18476048720239	3.76195231792263	-0.323469885279468	0.631345851005673	0.895122791781359
Merged-chr11-119914818-2	chr11	119914269	119915269	+	601.533325	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 1 of 7)	intron (NM_001085498, intron 1 of 7)	959.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	3.81502936510528	4.14627212944437	4.0912541687511	3.90905860237807	4.15688407704271	4.11302535161228	0.121069987160423	0.810931824846964	0.955096593239846
Merged-chr14-31390009-4	chr14	31389526	31390526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27651.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.47718837178906	7.56094310962601	7.47284558951479	7.43672799857172	7.7133053245786	7.34608101174061	0.0177173138483989	0.940774453313045	0.986888338850358
Merged-chr2-102897607-1	chr2	102897107	102898107	+	625.5	f0_balb.idr	intron (NM_001039150, intron 1 of 13)	Lx5|LINE|L1	4058.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.03301178557125	3.76556994955395	4.21082345283656	4.09992903261178	4.06627869204297	3.95228469569135	0.108653729635802	0.831705854372596	0.960478468368024
Merged-chr2-90477762-2	chr2	90477262	90478262	+	688.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1412.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.937451603961	5.91816532063466	6.11312332387722	5.61783272363192	5.52435787323893	5.79114801190277	-0.625802321962371	0.043995193585187	0.263910166693656
Merged-chr12-79018533-1	chr12	79018033	79019033	+	725.0	f1_balb.idr	Intergenic	Intergenic	-10630.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	5.79352382114443	5.49434676558756	5.66653068761666	4.83743930121967	5.30659214275883	4.93699376374014	-1.1743891702181	0.00223688291693218	0.0336332767893193
Merged-chr4-45531238-4	chr4	45530738	45531738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-410.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	7.39915911878987	7.46893941477714	7.29140035226268	7.24936536578278	7.3475488138037	7.30292524921932	-0.13500736389612	0.555245592347376	0.863191483122339
Merged-chr7-108934320-4	chr7	108933825	108934825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025344)	promoter-TSS (NM_025344)	-90.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	6.49694437665677	6.53924751469133	6.49347728095599	6.63576326561227	6.42807757752657	6.2826897906215	-0.0786608017006849	0.772381856382381	0.943716660313239
Merged-chr8-13594000-2	chr8	13593500	13594500	+	727.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-31539.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	3.92080142117786	3.75859308828335	3.73936339891574	3.58894263040999	3.39821092435173	3.70592492509759	-0.86178170969888	0.124251419944982	0.471601469447498
Merged-chr11-102190168-3	chr11	102189681	102190681	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	482.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	6.04247401400632	6.26787808736084	6.17289494359432	6.46621544738659	6.31456734741137	5.76500668066094	0.105957690150735	0.744972889177236	0.936032341688524
Merged-chr13-45392674-3	chr13	45392192	45393192	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	RSINE1|SINE|B4	2950.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	7.0139388288156	6.64110157366746	6.76972086594358	6.7615125823416	6.80118968741803	6.61646233056795	-0.133654042903188	0.616479781467946	0.888381733194521
Merged-chr8-22592829-2	chr8	22592329	22593329	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011696, intron 1 of 8)	intron (NM_011696, intron 1 of 8)	984.0	NM_001198998	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	3.89223004949862	4.40131957168051	4.32309359782279	4.43201440982998	4.38170544563218	4.43345177140114	0.502093681640002	0.299379286180624	0.69616163106831
Merged-chr16-21716786-4	chr16	21716289	21717289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22124.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.06628899040848	4.83704552078855	5.02585660528235	4.30268077328784	4.45590795334634	4.34069468067239	-1.4413900839976	0.000709402990821238	0.0138012635165428
Merged-chr13-37218777-4	chr13	37218277	37219277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126568.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.20045059295032	6.23123811718138	6.17993372644361	5.58351121692806	5.81288470907502	6.02804298653227	-0.680988523662287	0.0252221303664061	0.188037185156161
Merged-chr5-66041495-4	chr5	66041001	66042001	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 3 of 6)	Lx9|LINE|L1	-37216.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	3.61130024048548	3.54473671609389	3.54829247023	3.50716534404889	3.44336682313854	3.77137676058706	0.0119393482481313	0.983308994651224	0.996260780969259
Merged-chr19-17256555-3	chr19	17256053	17257053	+	581.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	82952.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.90206739380954	4.09393972601291	4.01297082891546	3.79767898996895	3.82683045607704	3.9369816891477	-0.476586651383414	0.346183124036036	0.734515828466387
Merged-chr11-96944050-4	chr11	96943555	96944555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003293)	promoter-TSS (NR_003293)	-36.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	6.95916465969985	7.22129021725402	6.61051475185128	6.98471236201457	7.143656933083	6.77272200522379	0.0269140285926401	0.925520746127903	0.983222594114141
Merged-chr19-34753458-3	chr19	34752951	34753951	+	725.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6340.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.24304032505902	3.97276220450415	3.89663118337767	4.2798751582512	4.40051749401723	3.91396021729947	0.480946864621957	0.354332926630452	0.74154840065609
Merged-chr11-20585825-3	chr11	20585327	20586327	+	737.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	42574.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.72576044924314	3.55892434381472	3.7729751670526	3.61323720625884	3.57253983466961	3.74235463563405	-0.156165699005227	0.776087387492208	0.94480820353868
Merged-chr7-125471029-2	chr7	125470529	125471529	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	20513.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	2.08704660560021	2.1829909855838	2.37530316898338	2.04102200857897	1.88683658685752	1.91908208324765	-2.26165359746677	0.0291998003864284	1
Merged-chr6-126940682-4	chr6	126940181	126941181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138594, intron 1 of 13)	Lx8|LINE|L1	715.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	6.68014876235793	6.84139480647915	6.95179220808476	7.18485305095554	7.38992800973097	7.0769472319535	0.620452681567268	0.0144189397670387	0.129216062480965
Merged-chr1-79760254-4	chr1	79759728	79760728	+	931.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	1541.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	4.9564244147009	4.8538480901422	4.6097355964849	5.12182705452995	5.11141084284144	4.72254360386655	0.402564844984159	0.324601996783034	0.717544999689449
Merged-chr3-84815469-8	chr3	84814882	84815882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177773)	promoter-TSS (NM_001177773)	-195.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	7.42890611842721	7.83962045310781	7.56573832410875	7.53463992637797	7.56876872457864	7.5139789523075	-0.125453992719167	0.60071678198516	0.881839772686588
Merged-chr11-60778693-2	chr11	60778193	60779193	+	688.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_175491, exon 1 of 1)	exon (NM_175491, exon 1 of 1)	1168.0	NM_175491	237782.0	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	5.95060605903259	6.01917740754308	5.93756147392939	5.94101308901783	6.09337033980306	5.71494693146449	-0.0559846564764021	0.854656982795207	0.965987623019113
Merged-chr3-41565617-4	chr3	41565116	41566116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	CpG	736.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	7.04409219016914	6.83643522889929	6.65706137791852	7.07122653500287	6.65804044938019	6.53991692485481	-0.125107135147743	0.666643189918083	0.908287837872376
Merged-chr13-42244680-4	chr13	42244235	42245235	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56741.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.01819474213516	4.92301365479004	4.28069450816311	4.92253403395597	4.62062129899231	4.35352874808138	-0.298921759389439	0.546582032471801	0.858865780077964
Merged-chr12-91581898-4	chr12	91581399	91582399	+	958.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	7750.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	6.06850727630848	6.35370437384626	6.16103379324097	6.41682135217755	6.51100940342743	6.22173634247057	0.320577698236918	0.264623792135503	0.662558796858873
Merged-chr14-20297667-2	chr14	20297191	20298191	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3001.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	5.44479083230799	5.96573292636724	5.68164298004397	6.07255921246663	6.13467504276537	5.68858069719166	0.477062461389752	0.166863801556488	0.54240433228749
Merged-chr12-17712101-4	chr12	17711602	17712602	+	880.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	21293.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.18250830178183	7.253270475017	6.99548459767931	7.62356725165129	7.90718527454687	7.27770690004273	0.714186625226329	0.00800852490814387	0.0861726807910041
Merged-chr16-92430124-2	chr16	92429624	92430624	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30046.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	2.8876658073981	2.89161089705552	2.8904323879215	2.75906711209523	2.64344746220995	2.84239457651699	-0.753462285881118	0.295112891029921	0.691990077927385
Merged-chr5-109866622-4	chr5	109866114	109867114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32472.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	5.88292874420752	6.19714314648705	6.1295907436687	6.03584273670664	6.03500110503112	5.89280213538686	-0.140169082125318	0.639808329227734	0.898199312621371
Merged-chr8-125527642-2	chr8	125527146	125528146	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-34813.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.26102541410379	5.36652479335317	5.27147985678137	4.94476178020143	5.19278097040023	5.20725337442592	-0.37064182222976	0.299586431702039	0.696314831841331
Merged-chr5-72555407-2	chr5	72554907	72555907	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	4238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	4.14754165303294	4.59710278551268	4.4943084894755	4.27451950469775	4.56480263297807	4.95655191082519	0.475520110024999	0.329782693603982	0.721504110160967
Merged-chr10-30676581-4	chr10	30676085	30677085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-20718.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.77860636936849	6.58262656111345	6.56547173691803	6.97748443203421	7.09605625449742	7.00808705033278	0.589014990630769	0.0191942975496379	0.15722771318274
Merged-chr14-103059815-4	chr14	103059293	103060293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9E|LTR|ERVK	-10423.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	6.24797916694566	6.29495578686916	6.74897919327562	6.68649921689515	6.87957911981734	6.5154707840447	0.434255537339171	0.142891176859266	0.50455063667587
Merged-chr15-25859649-4	chr15	25859134	25860134	+	930.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	MLT1A1|LTR|ERVL-MaLR	16336.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	3.54996924200715	3.6945480019397	3.71541930627144	3.69192537498689	3.75063213746476	3.92971270412703	0.458529449927557	0.396264649305421	0.77350948786932
Merged-chr2-147023808-4	chr2	147023315	147024315	+	926.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	10816.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.79124077656559	5.14468058261146	5.10957703456293	5.14348432425636	5.23831655700445	5.10618380337148	0.306042166053952	0.414907099373157	0.786115461363139
Merged-chr10-81401364-4	chr10	81400816	81401816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	8252.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	7.91404321368232	7.98063901637091	7.39619921094494	7.32437918930481	7.65755714057986	7.04498094031229	-0.607017051056973	0.0371308396994741	0.237799786872498
Merged-chr10-96338792-4	chr10	96338284	96339284	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112577.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.94792346161136	5.7940113287845	5.81056378580642	5.88249398481053	5.58666790477003	5.6325450700962	-0.267613755285619	0.395982727882339	0.773231268695054
Merged-chr19-40728408-1	chr19	40727908	40728908	+	553.0	f0_balb.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	68638.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.54067592397505	3.37973225302153	3.2528773975085	3.33478111680796	3.18799244611937	3.32552384698537	-0.479130074868374	0.437517587486463	0.799986011373495
Merged-chr17-35186851-3	chr17	35186339	35187339	+	628.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010734, intron 2 of 3)	intron (NM_010734, intron 2 of 3)	1601.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	5.9412394535255	5.33875867135799	5.99525885367926	5.86949492929668	6.05952197864904	6.31389515078133	0.530924619819901	0.136613861918616	0.493740502092718
Merged-chr2-31772053-2	chr2	31771553	31772553	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11880.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	7.14125816409392	7.34962805898844	6.88404321106134	6.86403329071131	7.0549186452911	6.88272622977261	-0.314102898330504	0.23244552872723	0.628761339174128
Merged-chr2-30547645-2	chr2	30547145	30548145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47399.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.15854643807215	4.32003544110829	4.37923935083218	4.0181377800702	4.32787709751964	3.69179308890354	-0.651137186782277	0.2358500499365	0.632196962128085
Merged-chr7-122307939-3	chr7	122307389	122308389	+	807.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	18764.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	2.88972283807696	3.1114199564278	3.30021275542516	3.21792919896843	3.25807506171653	3.31666687278526	0.673162284934165	0.309133499941913	0.704802606494279
Merged-chr17-57033229-2	chr17	57032710	57033710	+	564.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346527, intron 7 of 7)	intron (NM_001346527, intron 7 of 7)	-1703.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	2.86176215863282	2.94447527752465	2.84887025441346	3.18948848335219	2.91180657032057	3.22026353583607	1.02749059491285	0.140242624331919	0.500549405285049
Merged-chr10-95294444-2	chr10	95293944	95294944	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	29265.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	2.62912587516338	2.51703775643566	2.73344399628514	2.70988332468051	2.47609186530533	3.14486280214626	0.905246349408612	0.266276300060958	0.664098503595966
Merged-chr4-126020675-2	chr4	126020175	126021175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18B|LTR|ERVK	-3984.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	4.0024703505661	3.83245240178838	4.22913696515549	4.11723265195274	4.03104207364038	4.07169482222913	0.150137703505905	0.763397758260528	0.941793063578371
Merged-chr9-35041776-2	chr9	35041267	35042267	+	917.849976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.94250303808405	3.08099998631283	3.23668584801886	3.19678992478939	2.96463340475481	3.19672874146886	0.14149294051142	0.832126710383365	0.960607102173713
Merged-chr7-141123158-4	chr7	141122659	141123659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5353.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	4.90207595735755	4.91838978167144	5.10695903683971	5.35483029991154	5.15491006827444	5.06839231672981	0.484413220233083	0.189841679260345	0.575907966795463
Merged-chr8-108809037-2	chr8	108808533	108809533	+	733.333374	f0_balb.idr|f0_c57.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	94389.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.19250292133091	4.36943179912366	4.33589999498661	4.01847968936892	4.22657317966375	4.08196304991619	-0.502457730538387	0.287872832334129	0.685245511851696
Merged-chr12-34672879-4	chr12	34672364	34673364	+	717.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-143975.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.89161863720683	6.2211600367119	6.10167585648753	5.94966698839505	6.28937502922148	6.18332679756512	0.124795178655469	0.681770063471718	0.914871627621101
Merged-chr14-104522671-4	chr14	104522157	104523157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	9.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	5.93891545918064	5.85169624854835	5.69463806447127	6.15790993248176	5.95437023734465	5.88919048089734	0.294940802753689	0.33440841256918	0.724923280352655
Merged-chr1-131068376-4	chr1	131067873	131068873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	MTC|LTR|ERVL-MaLR	29470.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.61582701540793	5.74011289037529	5.57169671086417	5.96966391523355	6.21808619723037	6.32545552126164	0.924969011640634	0.00279894616668827	0.0399065648796775
Merged-chr7-55918496-4	chr7	55918017	55919017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 23 of 30)	intron (NM_011370, intron 23 of 30)	43976.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	6.80534279441439	6.91196583498017	6.72300025272008	7.10280981250654	7.57513248480562	7.52208929875911	0.901081588214843	0.0006421212708835	0.0127975153790837
Merged-chr11-117790457-4	chr11	117789948	117790948	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195090, intron 10 of 15)	intron (NM_001195090, intron 10 of 15)	-7212.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	2.55189821421771	2.67518127042949	2.74840360731963	2.71074318672761	2.37631032357505	2.8215380654828	-0.0701035277245892	0.930826036529546	0.984695878321107
Merged-chr4-134396251-4	chr4	134395751	134396751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285875)	promoter-TSS (NM_001285875)	-69.0	NM_133880	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	4.3620226282431	4.5138515168809	4.53345248492155	4.66559171305723	4.80791149896491	4.51531740447303	0.508620940321647	0.230776649932948	0.626487340955296
Merged-chr10-80931927-4	chr10	80931427	80932427	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008655, exon 4 of 4)	3' UTR (NM_008655, exon 4 of 4)	1836.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.15706929968824	4.14847664150721	4.25091996551017	4.62609505917951	4.39796411773218	4.45206109016714	0.824314001317628	0.0659618406692439	0.335221959181517
Merged-chr2-153350922-6	chr2	153350394	153351394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	4755.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	7.62586379894616	7.34884175475772	7.2544261882253	7.48389599884432	7.60594216536744	7.28767655615265	0.0697292262253157	0.780218969450235	0.945966807104547
Merged-chr9-101037533-3	chr9	101036879	101037879	+	677.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2495.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	5.08609944225603	5.34503731538756	5.60640512428138	5.05676063698257	4.95275499459107	5.05131986563533	-0.68907383223846	0.0680705320539094	0.341417536171971
Merged-chr16-11132061-2	chr16	11131561	11132561	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	B1_Mur3|SINE|Alu	2471.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	2.75808662614488	2.84044393853798	2.92380965939514	2.83692996709289	2.85880913535727	2.93692386121397	0.184561142399957	0.791526200193271	0.949762954296369
Merged-chr2-36226051-2	chr2	36225551	36226551	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4375.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	2.85214635829205	2.74281505526988	3.03357041278659	2.91907363523508	2.63334139965477	2.93262553406527	-0.228665319937387	0.755932057882035	0.939495792549816
Merged-chr1-182283455-4	chr1	182282968	182283968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007853)	promoter-TSS (NM_007853)	-667.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	5.94681740440362	6.17033603215491	6.04651611471849	5.90255187718583	5.93513505629947	6.19134819724826	-0.090270089640475	0.76297983338145	0.941663714620562
Merged-chr9-66833440-4	chr9	66832930	66833930	+	900.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	1276.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	7.64318725427883	7.88531919705726	7.30495149061049	7.61237753696287	7.69870502666874	7.35048533129118	-0.106871663437212	0.686546499436069	0.916761528494478
Merged-chr4-84077523-3	chr4	84077050	84078050	+	800.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32671.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	3.36470805496798	3.58698201253327	3.48050167046369	2.80320940189852	2.74315436395718	2.90777081450519	-3.63110078377058	1.87877110281009e-05	0.000692026498108111
Merged-chr11-80067781-4	chr11	80067283	80068283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	13208.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	5.99894113268041	6.00883188352239	6.03781967593154	5.91515798813417	6.18404812587571	6.22473245421862	0.17198582671984	0.557678018530192	0.864302294338175
Merged-chr15-86202863-4	chr15	86202363	86203363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11596.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.86183591443807	7.77997137683871	7.803832632094	7.8378023648885	7.84490689724064	7.80162514741566	0.0190980005792579	0.927877311356591	0.983740101474131
Merged-chr14-17633056-4	chr14	17632548	17633548	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27912.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.1165381076416	3.0043325706385	3.47020180834034	3.23340682028952	3.11245747470221	3.2770605881112	0.0101888972793949	0.987712203536615	0.997223245230291
Merged-chr12-54695794-4	chr12	54695278	54696278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001331162, exon 1 of 5)	exon (NM_001331162, exon 1 of 5)	116.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	7.92777963577964	8.3130892821109	8.10849670296886	8.15165811274089	8.38238212562463	8.17796435566304	0.164313959980163	0.475014434777028	0.821727753368561
Merged-chr16-91433698-4	chr16	91433210	91434210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27475.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	3.84029722599277	3.92687537975662	3.42840279242502	3.61777085826087	3.52265572085476	4.02484485406008	-0.0656114058894958	0.914301516834143	0.980912729144991
Merged-chr16-21380506-2	chr16	21380006	21381006	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-42612.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.0375654684104	2.68902141287898	2.89697702760742	2.80917606437742	2.54824225851464	2.96993163602454	-0.4981099203499	0.519290364695019	0.845725113262126
Merged-chr14-55608808-3	chr14	55608249	55609249	+	817.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159417, exon 9 of 10)	exon (NM_001159417, exon 9 of 10)	4170.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	3.76579511482233	3.54554380549186	3.83828214900618	3.5881869979827	3.47024639532231	3.90645822724663	-0.201743337459191	0.725090171060794	0.929505969181878
Merged-chr1-172309861-4	chr1	172309362	172310362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	7.3928770627783	7.35867889993172	6.98189458637142	7.6459971420425	7.5929946371133	6.80317001928573	0.218881607005477	0.485029871456252	0.827320846708454
Merged-chr9-7863130-2	chr9	7862630	7863630	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	RLTR30B_MM|LTR|ERV1	10040.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	3.35734939035131	3.59206553486935	3.7177497365671	4.12733395572948	4.15364235043232	3.84285928852392	1.63024755399772	0.00365341760031881	0.0486626175544528
Merged-chr7-114479983-4	chr7	114479487	114480487	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	64733.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	4.37384737339612	4.61126565021651	4.41333378538887	3.72000112110803	3.77167421419948	3.92121557542679	-1.98678575662544	8.37657174614474e-05	0.00244474844564437
Merged-chr15-102248573-2	chr15	102248073	102249073	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	-2073.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	4.05013425111385	3.90594038158945	3.84626366832768	4.17774813875065	4.09934575630308	4.21017111520291	0.636467112670726	0.193973994558567	0.581296310830689
Merged-chr5-99221045-4	chr5	99220516	99221516	+	907.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	RMER19C|LTR|ERVK	31911.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.40869425198764	5.24310892754709	5.6462713507794	5.11673426888361	5.09432042102243	5.58145291501436	-0.323447344649597	0.391332504695042	0.77033345281914
Merged-chr4-150110533-4	chr4	150110036	150111036	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-8808.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	5.09556950653965	5.04589937777709	5.02396437456225	6.30774474718807	6.1859802718413	6.19566091255796	2.17867250987766	1.85497303901177e-11	2.86893302286414e-09
Merged-chr18-67569317-4	chr18	67568814	67569814	+	867.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16593.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	3.54943852941456	3.51329954123814	3.62166309961536	3.77542025496211	3.48387439831023	3.63924719087986	0.265516378131479	0.637072949403833	0.897280984021025
Merged-chr2-27721260-4	chr2	27720780	27721780	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	10697.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.8109286511976	5.78863886458817	6.05921891053036	5.76580352483006	5.73419998387938	5.82360594840686	-0.198285914814921	0.518943372220595	0.845542912781001
Merged-chr16-32401715-4	chr16	32401182	32402182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	1176.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	5.55203377406603	5.36929581878709	4.9114650087667	5.10790310994222	5.07105745862149	5.12872988341252	-0.442865460080367	0.251542686286332	0.649003529938392
Merged-chr2-84649982-2	chr2	84649482	84650482	+	805.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355065)	promoter-TSS (NM_001355065)	-502.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.44933978243498	7.29793016544396	7.1023766117732	7.41002930711225	7.76120037486014	7.3676354383968	0.347467999120577	0.176073904401151	0.556259299772608
Merged-chr8-95141875-4	chr8	95141375	95142375	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	665.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	6.0220930296444	6.30467948526558	6.2633527269116	6.01773440782791	6.24160302771036	6.32313710708805	-0.00465122559454264	0.987375554546974	0.997218304929226
Merged-chr9-121297841-8	chr9	121297319	121298319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152160, exon 1 of 18)	non-coding (NR_152160, exon 1 of 18)	317.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	8.41769051877159	8.47382994742098	7.96880702437976	8.50240847012939	8.54303529471073	8.15969784461976	0.146021059302853	0.559216804989837	0.864901733108576
Merged-chr1-184046512-2	chr1	184046012	184047012	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	12131.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.05011629460464	2.97090325369643	3.12347221555818	3.43179427000001	3.24696709682001	3.7249013632668	1.78839945808338	0.0072408856407932	0.0800876794362782
Merged-chr11-103249063-3	chr11	103248577	103249577	+	817.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	18324.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.96285264737696	6.93683227705248	6.91986916112753	7.09283642727568	7.27084815294011	6.87536736968509	0.243170375836014	0.335763524098167	0.725879995869482
Merged-chr8-126516505-2	chr8	126516005	126517005	+	873.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-41440.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	4.732488375408	4.72984281633175	4.95680699235777	4.84302374111729	4.48595417666482	4.22875109459053	-0.598036563038483	0.187727721165799	0.572987312749648
Merged-chr10-81181195-2	chr10	81180695	81181695	+	753.785706	f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 11 of 13)	intron (NM_007907, intron 11 of 13)	-1812.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	3.24510355570958	3.27983647721977	3.39673981707798	3.43992397626427	3.4746561828889	3.41249081732392	0.546437895516769	0.356787741959232	0.743460467581681
Merged-chr3-21963210-3	chr3	21962722	21963722	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113430.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.95474499150494	3.80773968216735	3.78916719945469	3.93578910181697	3.91117432520731	4.43925229645049	0.751439198524311	0.16066259996539	0.533392395879191
Merged-chr7-143544464-2	chr7	143543964	143544964	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	4364.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	3.31258666610225	3.39657497142996	3.31072131299576	3.1121686175618	3.31679167443155	3.14799519106007	-0.571021169986496	0.365936012799999	0.751006406695499
Merged-chr14-50819888-3	chr14	50819404	50820404	+	993.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009632, intron 12 of 15)	intron (NM_009632, intron 12 of 15)	11988.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.08338552098373	4.24203051248275	4.59791605381306	5.72346906435395	6.10471612048824	5.70775137473848	3.49513035479661	6.04757144215142e-16	2.00480607393839e-13
Merged-chr3-52102114-4	chr3	52101602	52102602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	2904.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	7.25832294708835	7.39615975642505	7.53320085676504	7.24367262978039	7.53834907972168	7.38808535459477	0.00558022530603857	0.981574899538443	0.99571978194797
Merged-chr9-57910997-4	chr9	57910532	57911532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122873)	promoter-TSS (NM_001122873)	46.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	7.34072767600845	7.40059968450033	7.34816992136124	7.54982632207792	7.48056772936822	6.97085018298555	0.00791194741397624	0.975930343473002	0.994572735300192
Merged-chr17-34032307-4	chr17	34031810	34032810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	-40.0	NM_001205216	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	8.47885894399243	8.1968179228816	8.26844157902228	8.61261034835434	8.48826214752114	8.24704238219326	0.196212906290073	0.385356115073162	0.766383317550794
Merged-chr3-127331734-2	chr3	127331237	127332237	+	878.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MTC|LTR|ERVL-MaLR	77321.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.8325498758035	2.53113063317154	2.70897453550201	3.093007593085	3.0640153266369	3.26381057460309	2.2760835750929	0.00389877772305993	0.0509469558555899
Merged-chr2-60805551-3	chr2	60805067	60806067	+	745.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	75871.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.54948848833086	3.86134337100583	3.54320697604723	3.59373813218071	3.6552417719257	3.61472788744011	-0.15150031902253	0.788967528456616	0.949092571737679
Merged-chr6-38992141-4	chr6	38991653	38992653	+	857.6375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	L1ME3|LINE|L1	73167.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.6326371942892	4.53527843291154	4.17954051595089	4.26460506110721	4.29505990978099	4.3447835891678	-0.450684977588161	0.327776767369042	0.71992527872567
Merged-chr11-121550412-2	chr11	121549912	121550912	+	682.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 15 of 38)	intron (NM_029878, intron 15 of 38)	-31070.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	4.25939736947206	4.55316052434752	4.69631254840502	4.55716067731067	4.33886846282033	4.68708112301762	0.0448636765153776	0.921009980317223	0.982480847360633
Merged-chr11-68707221-4	chr11	68706693	68707693	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	15278.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	7.31691630839421	7.86222121631711	7.56401881118572	7.3037870305589	7.55477261602438	6.80785690161998	-0.487556926747793	0.108347068716674	0.439708476504755
Merged-chr9-25486464-4	chr9	25485964	25486964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4867.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	5.1181585209386	5.07737738739838	4.92085731779044	5.27685029275525	5.08384032318248	4.55663404237813	-0.0579795891802368	0.890688191038836	0.974547949258886
Merged-chr3-122629744-4	chr3	122629193	122630193	+	812.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9979.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	3.54878790903098	3.19765906176615	3.21647744214779	3.94201686742067	3.77648545478624	4.17875749921613	2.22840990521941	0.000570063428327107	0.011643062774728
Merged-chr4-134543439-4	chr4	134542944	134543944	+	942.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 6 of 11)	intron (NM_029100, intron 6 of 11)	-8057.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	2.19701612312615	2.03262131746009	2.26160067235388	2.10157027084179	2.03005759154481	1.93475266455152	-1.08229042116777	0.257984504021671	1
Merged-chr9-90269538-2	chr9	90269052	90270052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1217.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.14095927900454	7.23380951951987	7.39079429383926	7.67042446613242	7.77706891969793	7.62617507454675	0.649659449843726	0.00457718638112175	0.0575488855243847
Merged-chr8-36159168-6	chr8	36158695	36159695	+	907.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	3185.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	4.34700006022786	4.54097701233255	4.49953805700259	3.86285596627414	3.73340868649047	3.93401658087825	-1.83953272252686	0.000207496781241364	0.00516618556957852
Merged-chr3-96601037-4	chr3	96600550	96601550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163170)	promoter-TSS (NM_001163170)	-83.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	5.32116524350447	5.08086116019288	5.11109168450565	5.28528796959618	4.86958944313401	4.88134673847228	-0.313734475428924	0.418653988314741	0.788726823651631
Merged-chr13-64154846-4	chr13	64154324	64155324	+	707.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1625.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	4.03810850512145	4.0739809051644	3.76102234463942	3.90628168280978	3.95593436947051	3.83259846825633	-0.214615942209364	0.677954538615874	0.913276150258218
Merged-chr16-32060041-4	chr16	32059541	32060541	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	19301.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	5.46680403235233	5.42783816772741	5.37631042300751	5.08815038313004	5.030350456567	5.34936790267627	-0.554650311998596	0.114156783096968	0.451234828318327
Merged-chr2-59187564-4	chr2	59187065	59188065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	MIRb|SINE|MIR	26715.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.93762765386485	5.71052846621552	6.12810980132555	5.65173497905748	6.07812867332047	6.10601126749003	0.0590059086239337	0.858192311885729	0.966847636478434
Merged-chr2-73457195-2	chr2	73456695	73457695	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-3306.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.67262280223661	4.80532351102225	4.94447342137961	4.78417202667934	4.76828391193469	5.19986487735548	0.256524591782698	0.530660320322948	0.851304720575858
Merged-chr6-52191994-4	chr6	52191541	52192541	+	962.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008265)	promoter-TSS (NM_008265)	-338.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	2.81304542830331	2.96727613044369	3.2609112690852	3.38712783851752	3.33558597480199	3.44072199644857	1.60090814885512	0.0201816641254622	0.162484364639716
Merged-chr9-124020067-4	chr9	124019577	124020577	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1894.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.7725688314064	6.73676950770406	6.78396198658138	6.72789335129406	6.74276321873126	6.60059957837091	-0.104076785936894	0.677759638548919	0.913161436645915
Merged-chr3-103791359-4	chr3	103790860	103791860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301306)	promoter-TSS (NM_001301306)	-85.0	NM_010432	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	7.75141118213278	7.69169041777567	7.42390911365751	7.76570602855881	7.5268627200892	7.64174602210707	0.013958062579511	0.952801332468275	0.989289541051949
Merged-chr2-164860312-1	chr2	164859812	164860812	+	621.5	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-2604.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.42832185701465	6.14660967492283	6.38764346078434	6.46432198695128	6.21240600054096	6.48308791058219	0.101186183282966	0.723463555771715	0.929080239793919
Merged-chr8-71611011-4	chr8	71610516	71611516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-8.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	7.9633260916804	7.97808241079661	7.73513986662863	7.74727025278356	7.87428143202144	7.44510207887733	-0.273707418612765	0.256272485706625	0.653326419028673
Merged-chr11-79339552-4	chr11	79339062	79340062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010897)	promoter-TSS (NM_010897)	-330.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	8.54086363048358	8.68261375242369	8.14928314584092	8.50893661525459	8.5722864492877	7.95169274171816	-0.14139164303723	0.60306941254032	0.882523301644118
Merged-chr18-39370872-4	chr18	39370365	39371365	+	901.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 21 of 21)	Charlie4z|DNA|hAT-Charlie	116380.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.7335358908455	3.85445005326078	4.20077239203108	3.95813212408785	4.29558949217345	3.99260120229287	0.48310488857648	0.362126947768421	0.747675323428227
Merged-chr12-105733533-4	chr12	105733047	105734047	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030187, intron 6 of 17)	intron (NM_030187, intron 6 of 17)	27565.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	4.25579103678197	4.07413820182562	3.86731718127947	4.07261623800636	4.04922318230459	4.13936318241032	0.00120632697789849	0.998060798629109	0.999579683478894
Merged-chr11-61684323-4	chr11	61683811	61684811	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178618)	promoter-TSS (NM_178618)	-99.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	3.54120399066638	3.90520175120079	3.57447268294665	3.82059184614767	3.82629559762057	3.8593889410278	0.462824111369405	0.403548960132896	0.778882003719199
Merged-chr18-34862256-2	chr18	34861756	34862756	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007913, intron 1 of 1)	intron (NM_007913, intron 1 of 1)	1049.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	2.94013671860056	2.83027192627915	3.00413153752744	2.85710126670762	2.6593841531511	3.01867268202261	-0.384313471689848	0.594862754192627	0.87924603206665
Merged-chr5-117181819-4	chr5	117181357	117182357	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	48269.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	6.0494201499615	6.35630990211137	6.00706976328039	5.84219510795663	5.98408854213459	6.02206599548626	-0.352383986019333	0.244556446766303	0.641966459162426
Merged-chr17-42915165-5	chr17	42914570	42915570	+	835.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-38646.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.49427441613873	4.42862346485206	4.54857289123078	4.78630914966408	4.96559346550359	5.15227994142816	1.12436123791834	0.00600207905298466	0.0698002786639759
Merged-chr6-29768328-4	chr6	29767814	29768814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-129.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	7.61932618651194	7.5908914069261	7.38024400698404	7.32785496468275	7.36839030041063	7.17819101590401	-0.354112518044963	0.130217905147787	0.48248257376114
Merged-chr10-127572736-3	chr10	127572216	127573216	+	977.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 31 of 88)	intron (NM_008512, intron 31 of 88)	-38157.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.10849314232631	2.84791167162415	3.05944053639893	2.86139714454463	2.63915911071954	3.18683152545997	-0.460677760168659	0.541198429765297	0.856765739682368
Merged-chr19-7019461-4	chr19	7018968	7019968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	1.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	8.43018555024926	8.8733566147861	8.41579150810033	8.48031961340053	8.9013459586907	8.48257091290321	0.064256779722909	0.80018300416255	0.952428832140568
Merged-chr17-10743824-6	chr17	10743307	10744307	+	834.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	96384.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	3.81729994537457	4.20578879147621	4.0497732375542	3.78829876499268	3.75677606498121	3.8761141951628	-0.716165907727935	0.171121587104726	0.549056608175299
Merged-chr11-20937206-3	chr11	20936721	20937721	+	877.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106113.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.52464388181249	3.52371380578982	3.65206380754033	3.13188382781838	2.86411026260469	3.52124717608172	-1.49163259987534	0.0370548823209474	0.237448028352822
Merged-chr7-19467782-4	chr7	19467276	19468276	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-9282.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.08187621567573	5.85867540055759	6.42783584002848	6.84090216883711	6.84256162316248	6.91980939600382	1.19248794921304	3.82961404840839e-05	0.00126500407201257
Merged-chr2-129490645-2	chr2	129490137	129491137	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	RLTR42-int|LTR|ERVK	45965.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	7.32233244088322	7.19682820663922	7.30230378977258	7.00610262439435	7.07273858064366	7.03210349058241	-0.354227874500551	0.129436605368736	0.481228589205873
Merged-chr8-13161442-2	chr8	13160942	13161942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	2281.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	6.04283531434001	6.00195221555878	5.72633332776248	6.31385319747194	6.12786387134437	5.67378613950593	0.23642761884162	0.478848807791787	0.823902254052681
Merged-chr10-119610598-4	chr10	119610072	119611072	+	863.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	151127.0	NR_045359	75321.0	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	3.20516241706861	3.09506227621282	2.75978324578553	3.11548993505108	2.98032463185232	3.15295816450269	0.196426874903545	0.786612399092833	0.948530822116986
Merged-chr19-40680222-2	chr19	40679722	40680722	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20452.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.79846811627763	6.86121633889423	7.14752538209242	6.75160778078691	6.78778929153883	6.89861259074515	-0.193588435097634	0.453864886580304	0.809979841654596
Merged-chr12-55472806-2	chr12	55472306	55473306	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	19841.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.81432853300409	4.76095648423238	4.67170763491341	4.56480227783744	4.62474357324024	4.88775344711564	-0.148680811392137	0.715626213837283	0.926418424807894
Merged-chr5-137884020-2	chr5	137883520	137884520	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12262.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	4.8549021596247	4.77196723625667	4.79507119286956	4.61538260946353	4.9754610568217	5.13298006945424	0.253713735626549	0.533209539731644	0.852250319483483
Merged-chr9-56094971-4	chr9	56094467	56095467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	4991.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	5.4808205958417	5.44801411362404	5.73511953062779	5.22875816166977	5.34814122482001	5.6212289434184	-0.291304005601975	0.401875041081604	0.777823507457637
Merged-chr15-78589735-3	chr15	78589259	78590259	+	699.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.59571268617464	6.66079557514129	6.64595121813409	7.12361988092237	7.37243085419058	6.77147335561409	0.756891159114402	0.00609280454622674	0.0705496911609288
Merged-chr14-76942109-3	chr14	76941648	76942648	+	766.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94469.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	3.4767428003436	3.69940973066352	3.9136343903898	4.0976208245491	4.27381281943926	4.07969236698157	1.42627920840909	0.00784216312506579	0.0848460403589662
Merged-chr6-38550797-4	chr6	38550290	38551290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-544.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	8.23786371305167	8.63097666150043	8.10620825357426	8.07743652484243	8.50896228277552	8.40948282744809	-0.00547265056279349	0.982913247487478	0.996178386077199
Merged-chr3-27202079-4	chr3	27201550	27202550	+	979.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19046.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.44202313519927	6.57854719027854	6.37822388490457	6.34154194086066	6.21722972124624	6.03105441734393	-0.434599553143274	0.122244317256752	0.467725340135961
Merged-chr11-51860556-2	chr11	51860056	51861056	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2926.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.10309258331005	3.38348996977553	3.52523199304307	3.15940443083631	3.13932595048542	3.33376491546021	-0.547331028292714	0.396062139649397	0.773331890553726
Merged-chr13-69533502-6	chr13	69532994	69533994	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001169131, exon 1 of 13)	5' UTR (NM_001169131, exon 1 of 13)	370.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	5.90957915681237	5.96113809187219	6.15294292803097	5.74409367817931	5.44047517721108	5.71115827345801	-0.67550586122788	0.0333058160962153	0.222648858820108
Merged-chr6-99670986-4	chr6	99670500	99671500	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	2.52561279345994	2.57840053251837	2.70544944144446	2.41506699057461	2.20368999683005	2.719309351773	-0.845907906731508	0.338571047012827	1
Merged-chr2-93450922-4	chr2	93450435	93451435	+	874.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	1737.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	3.68420193635033	3.35621270151967	3.48948312707295	3.6892286618796	3.41685728568886	3.76984397386231	0.38302953822855	0.518322612129416	0.845156513047069
Merged-chr2-84601403-6	chr2	84600982	84601982	+	915.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47998.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.77554537589484	4.44222915539952	5.11582899832031	4.81750010747728	5.01955513267769	5.0843759147209	0.404377368327629	0.347255152659784	0.735382424511812
Merged-chr7-73608989-2	chr7	73608480	73609480	+	767.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50585.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.46409386143533	5.76948249169343	5.58428907513279	6.00979016182153	5.99381836212635	6.025133013919	0.702303375217351	0.0240007305134016	0.182148504937414
Merged-chr15-86159693-1	chr15	86159193	86160193	+	1000.0	f1_balb.idr	intron (NM_145475, intron 3 of 12)	intron (NM_145475, intron 3 of 12)	-26035.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	2.81856716551576	2.73972889619639	3.07010668406039	2.8083306360281	2.50471258902317	2.66650389855787	-1.1446822918537	0.141368869467322	0.502119843364898
Merged-chr4-149306926-5	chr4	149306500	149307500	+	885.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	698.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	7.11578172851372	6.93360633411988	6.58194223659188	6.72345501985973	6.64217524845986	6.45453127775535	-0.451676902124632	0.109008685370248	0.44106937375527
Merged-chr9-118666250-4	chr9	118665747	118666747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-45445.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.07635635965027	7.80212832480617	7.84891413510568	7.96924369188271	8.02999647495455	7.59738409774431	-0.0418587355814757	0.863162007650182	0.968203690581793
Merged-chr9-120858392-1	chr9	120857892	120858892	+	783.5	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	56858.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.27933198149688	2.24414546023656	2.69760618818464	2.18041618517535	2.06439710801618	2.41320556771126	-1.30490689706806	0.163254369404665	1
Merged-chr14-30617464-3	chr14	30616954	30617954	+	814.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-7144.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.53320646664302	4.58832493770563	4.96851599230617	4.82549605237823	4.90015567824206	5.24881069500565	0.667052451499852	0.113189885134337	0.44938889230771
Merged-chr15-59481318-4	chr15	59480825	59481825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107127.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.19157688883261	4.99015386619893	5.12052151970162	4.77034657344787	4.56899199351837	4.67099952224468	-0.970818942600024	0.0129100173664712	0.120374640862887
Merged-chr10-69274121-2	chr10	69273621	69274621	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	60927.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	2.86559456811762	3.19670823022095	3.22571786571274	2.81875275887705	2.67957314771454	2.95767523516067	-1.40644904313705	0.0568243252444778	0.307347793483003
Merged-chr8-88300436-4	chr8	88299930	88300930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	6226.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.63077869821984	5.87740334266283	6.26752507519182	5.80064097856473	5.74899394843123	6.13663386093757	-0.0757152175942308	0.8264310107505	0.959132530412348
Merged-chr2-118545967-4	chr2	118545473	118546473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	-1386.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.22796771072301	4.96740188430378	5.00450061074469	5.44042643706694	5.6091927376777	5.46578700274406	0.868916317940295	0.0138658360773987	0.125949772814366
Merged-chr11-98816945-4	chr11	98816440	98817440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-6851.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	6.35382010772955	6.0785769440998	6.40835696076381	6.41655397769369	6.78761497702459	6.3734457752664	0.437527990280179	0.140358291572123	0.500699117062725
Merged-chr7-97781013-4	chr7	97780487	97781487	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7554.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	4.24736213372957	4.06874578963826	4.30785241488559	4.60245944656561	4.91577172593975	4.85807359338552	1.49601223945509	0.000708671813088757	0.0137938411017294
Merged-chr14-33246098-1	chr14	33245598	33246598	+	668.0	f0_balb.idr	intron (NM_153800, intron 2 of 10)	RLTR16|LTR|ERVK	29275.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.98363203103119	4.91872446818641	4.79210083368479	4.0736266854554	3.71097731645729	4.12206886865912	-2.57154349617854	1.65199751311352e-07	1.11123208626637e-05
Merged-chr11-117988178-2	chr11	117987678	117988678	+	894.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	1321.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	5.6093706748213	5.42686482045676	5.06968168466146	5.31682025392517	5.2310552911633	4.94120125723033	-0.433591756862499	0.258096101014889	0.65554518843855
Merged-chr4-53437511-4	chr4	53437002	53438002	+	965.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.91640562277773	3.92768293064027	3.6072530544959	3.63998255731479	3.2938118112978	3.50822201285189	-1.21812322211699	0.0390654250440966	0.245142822245998
Merged-chr9-40787500-4	chr9	40786987	40787987	+	729.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GGAGAA)n|Simple_repeat|Simple_repeat	-13786.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.5462743763688	4.27785957636111	3.9554616955897	4.10439816991692	4.32054775389528	4.4959565467524	0.0565581011087534	0.911083869654831	0.980017061055921
Merged-chr12-111443740-3	chr12	111443280	111444280	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1119.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.75451113684137	8.58365152243785	8.24839112973686	8.63407771927299	8.89876992593431	8.17960131667664	0.0853265225217932	0.754537224567692	0.938987682003926
Merged-chr4-49521163-4	chr4	49520690	49521690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289901)	promoter-TSS (NM_001289901)	14.0	NM_001289901	230162.0	Mm.186994	NM_145547	ENSMUSG00000039634	Zfp189	BB131811|C430015I23Rik	zinc finger protein 189	protein-coding	6.186645513844	6.81528186663739	6.51823699629191	6.45299115087134	6.54177146491456	6.47042159050312	-0.0744903591955747	0.804626394815576	0.953651704501661
Merged-chr10-44453976-3	chr10	44453467	44454467	+	676.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	4781.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.20264559609637	3.32920153562323	3.47555722756323	3.46385052267311	3.58915478430528	3.38056090972486	0.578805553842631	0.336435318919015	0.726440471678779
Merged-chr2-4460302-4	chr2	4459828	4460828	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	59352.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.7796460373229	4.59253628863996	4.48710038361653	5.8061922053819	6.37552974571758	5.38778130528261	2.60693831550658	2.91254971689425e-09	2.96630889649127e-07
Merged-chr4-130902895-2	chr4	130902395	130903395	+	920.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10439.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	5.56043387805735	5.11277086413494	5.57943216040591	5.81254460344834	5.27712011298108	5.44270218440155	0.190713597541335	0.615651061704108	0.888073730124794
Merged-chr1-75400885-3	chr1	75400403	75401403	+	842.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	818.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	4.29536947631603	4.43736393568526	4.36508316035366	4.41460797045735	4.43192366273038	4.29726021647905	0.050446121087169	0.908888673244881	0.97935546966965
Merged-chr1-34858813-4	chr1	34858277	34859277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	8788.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	6.74487806305416	7.17353510982947	6.9016892689382	6.85048073003808	6.84990578758439	6.79713839316953	-0.188837555180869	0.473941622436353	0.821201418509934
Merged-chr10-111132239-3	chr10	111131736	111132736	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-32566.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.77735506089116	3.79218198384072	3.85013032003146	3.68002731196094	3.57881875192911	3.55202545409529	-0.675193806379403	0.211898680009809	0.604341572108181
Merged-chr17-70969888-2	chr17	70969348	70970348	+	705.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20668.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.82334248192521	5.90433524124636	5.34763946233872	5.88651494180747	5.9969140022028	5.74890099306161	0.282114983498266	0.406439343835925	0.780676741566939
Merged-chr1-153492059-4	chr1	153491567	153492567	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4407.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.32761998791553	6.08117256576559	6.4991866364656	6.30885641136185	5.83730418217676	6.43917237345075	-0.163094073723739	0.616637898296623	0.888421011873208
Merged-chr7-3719380-3	chr7	3718872	3719872	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011095, exon 4 of 15)	exon (NM_011095, exon 4 of 15)	1010.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	4.2724885993503	4.22191180496542	4.63181826383385	5.31407250026074	5.10258837622102	5.71826715470041	2.3060228336086	1.69050575412182e-07	1.13164604013651e-05
Merged-chr12-40656608-3	chr12	40656105	40657105	+	762.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210552.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.46725338289573	6.62811878337472	6.71428010064147	6.97541575314696	7.12648699640684	6.78876158184889	0.588201898659561	0.0249764201123161	0.186874424221059
Merged-chr16-93683152-4	chr16	93682629	93683629	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-90.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	5.67614522557703	5.85088254007913	5.97644342540964	5.60110230090774	5.43344495590087	5.65106478550551	-0.508849021011923	0.11380816339365	0.450659116018766
Merged-chr7-4813551-4	chr7	4813084	4814084	+	905.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1244.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	7.40887913543752	7.89621665989461	6.97587390919952	7.40452460667206	7.79379688944414	6.9261109028642	-0.0852943855520779	0.805943440573737	0.954088063442686
Merged-chr1-164079042-2	chr1	164078542	164079542	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 7 of 7)	intron (NM_001164059, intron 7 of 7)	16966.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.61901959168179	3.64173226909153	3.68641820118235	3.97190611198639	3.96250455791724	4.10043390866738	1.1646511066915	0.0254229587757573	0.189009431184168
Merged-chr1-9700524-4	chr1	9700029	9701029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290397)	promoter-TSS (NM_001290397)	-320.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	5.16448984350986	4.99997573489418	4.99087832809225	5.33910646451128	4.94135535426889	5.31867980196224	0.304307309678082	0.423534973787263	0.792055804178955
Merged-chr16-11385483-2	chr16	11384983	11385983	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-20165.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.18978885862455	5.26472882593759	5.04325823592547	4.93669919010099	4.9756785362444	5.14197804906152	-0.341530857379794	0.351185375635753	0.739086949987195
Merged-chr17-26531026-4	chr17	26530586	26531586	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-22614.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	6.77473922430138	6.6896765981959	6.4246205974437	6.55390936252634	6.41809069884178	6.32590874875866	-0.333277455867998	0.225003721682096	0.619916879365712
Merged-chr11-40855975-4	chr11	40855471	40856471	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-100685.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	3.83828209794706	4.20578744195624	4.05806914384464	3.91264957064137	3.75933868029736	4.17110668288007	-0.284299737479196	0.589144393924584	0.876753289776615
Merged-chr18-60775747-2	chr18	60775247	60776247	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	1151.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	5.53653222025823	4.87448914351731	5.14141482749753	5.53429228916971	5.38140558668472	5.13606285270324	0.291306978171596	0.467581299087588	0.818056375344009
Merged-chr11-103406618-1	chr11	103406118	103407118	+	594.0	f1_balb.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6046.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.76908264504657	4.79437839456646	4.91457352057138	4.9475096691609	5.18903191359961	4.97973632090066	0.501778608400943	0.188264572247028	0.573729802502591
Merged-chr6-135252706-7	chr6	135252228	135253228	+	977.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	1608.0	NM_010352	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.54559747757316	3.33714234557684	3.42642500853895	3.01428514369659	2.83051792065813	3.09813673773908	-2.13015004023195	0.00226782490258932	0.0340063388889264
Merged-chr11-68901006-2	chr11	68900506	68901506	+	676.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-560.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	4.04387593212321	3.56698269969301	3.45093718760249	3.94644639711554	3.85944201252023	3.64603139164272	0.331936964617758	0.582415006843648	0.87374470272009
Merged-chr14-103487162-4	chr14	103486662	103487662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26179.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	6.25113853670146	6.11948967708989	6.18827967475095	5.90552793260824	6.26389438268853	5.95769071091865	-0.208133472698111	0.487067083162592	0.828231456470534
Merged-chr8-117126653-2	chr8	117126153	117127153	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021486, intron 7 of 10)	MIR|SINE|MIR	30788.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	3.18949135036864	3.23497146293359	3.52373114827615	3.38006799631326	3.32220829995841	3.73902514505826	0.641342294386866	0.307641969171612	0.703752864027556
Merged-chr6-17625202-2	chr6	17624713	17625713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-11797.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.02204517808822	4.06868068448882	4.35785537791492	3.84676249331381	3.7887163150218	3.93939338849812	-0.887185942286126	0.0810657186265621	0.376728082405975
Merged-chr7-89215925-4	chr7	89215437	89216437	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	MTC|LTR|ERVL-MaLR	122850.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.99351864521079	7.18384182449908	7.09952108336408	7.02110711406025	7.33089635036758	6.98396066906835	0.0548914063049117	0.829019935892775	0.959932344512127
Merged-chr5-65722726-4	chr5	65722207	65723207	+	897.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-24851.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	5.00072946535482	4.79492489759606	5.5397830429862	5.03649072505808	5.10731404786816	5.39037940632117	0.0884893693072284	0.83259990647747	0.960673549444322
Merged-chr6-142345738-6	chr6	142345228	142346228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183165)	promoter-TSS (NM_183165)	31.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	6.72626920771538	6.84888782722748	6.54480791073621	6.61886045482655	6.71561228926126	6.43662220627317	-0.183194919391137	0.496249334411603	0.83293489768267
Merged-chr2-153240862-5	chr2	153240354	153241354	+	890.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080463)	promoter-TSS (NM_080463)	504.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	8.37817291249401	8.3815890258186	8.23263750864169	8.33583310800422	8.29147575514228	8.21013496645148	-0.0753524957829843	0.713185473067875	0.92541785131338
Merged-chr2-150842338-4	chr2	150841821	150842821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 5 of 12)	intron (NR_151505, intron 5 of 12)	249.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	7.36154503784112	7.53180252018235	7.19351859301222	7.28103866468346	7.61094205039884	7.00983874530036	-0.056438152174405	0.836721448226046	0.962001762335242
Merged-chr4-63585545-2	chr4	63585045	63586045	+	662.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356354, exon 10 of 10)	3' UTR (NM_001356354, exon 10 of 10)	15219.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	6.16656075135389	6.29059880652177	5.85851596737526	6.06142270165916	6.26581470310495	5.89481704242254	-0.0589187518106125	0.850796989157071	0.964981271430729
Merged-chr3-96574799-2	chr3	96574385	96575385	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8084.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	4.00471932712883	3.72323672650881	3.9024294957573	3.61306791925826	3.68512103808168	4.10747892662202	-0.221810730838241	0.689760123454194	0.917488557497671
Merged-chr2-129912461-1	chr2	129911961	129912961	+	898.6666869999999	f0_balb.idr	Intergenic	Intergenic	-99879.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	5.00752844187079	4.7464750181652	4.69758632248648	3.70189576234253	3.43183395720041	3.7115450748721	-4.02846192334498	8.64351578321101e-11	1.16754815144387e-08
Merged-chr19-34420618-4	chr19	34420121	34421121	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54514.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.80647910199316	3.56358196656825	3.50939923757824	3.78173034060918	3.9228025614566	3.90275719825932	0.759620003234411	0.167104486359812	0.542760172575035
Merged-chr12-98258089-2	chr12	98257589	98258589	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	1370.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	4.93109517987148	4.82860715359095	4.56271810452421	4.9966940777272	4.8377298296912	4.75913967570307	0.172278263951035	0.670855017170265	0.910196064908417
Merged-chr6-100800650-4	chr6	100800134	100801134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-33004.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	3.60224747530399	3.3142684902485	3.3202190143914	3.39862175227353	3.44874642246135	3.44956405060933	0.0328123318610955	0.956419167393939	0.989887454023164
Merged-chr16-24685197-3	chr16	24684700	24685700	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	(A)n|Simple_repeat|Simple_repeat	-36655.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.07821653849444	3.02910645754688	3.42710475580675	3.06458974737909	3.12321914276932	3.17596301066091	-0.261174593414044	0.693571651218152	0.918960880648635
Merged-chr13-32801948-4	chr13	32801443	32802443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-87.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	6.02934802455185	6.05594466772383	6.11393233865316	5.83764539755956	5.92764169343208	5.99914851433898	-0.250201724115299	0.388661015360546	0.768529129423012
Merged-chr11-83298361-1	chr11	83297861	83298861	+	571.0	f0_balb.idr	exon (NM_134025, exon 2 of 4)	exon (NM_134025, exon 2 of 4)	616.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	8.40068238185783	8.54690168887043	7.97240897004115	8.09073565174086	8.22198440438712	7.85548767893366	-0.373086354783333	0.141948594123436	0.502970600852653
Merged-chr14-118900582-3	chr14	118900088	118901088	+	970.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360411, intron 11 of 21)	intron (NM_001360411, intron 11 of 21)	22203.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	4.69434203934499	4.76972274645225	4.40957373657231	4.55241950972741	4.49436700405138	4.12884867030257	-0.557154872831428	0.228588804476934	0.623824770184215
Merged-chr11-89026821-3	chr11	89026303	89027303	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	27400.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	5.41599129450456	5.28947825123672	5.47297681026314	5.36623042734675	5.16432538134856	5.47899331313775	-0.1151689918341	0.739937038298848	0.93436568346332
Merged-chr10-54054392-4	chr10	54053910	54054910	+	978.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	21386.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.29208778905325	2.94573313925062	2.88279501320817	3.06187036231491	2.94233876852418	3.08158004914385	-0.139446990153735	0.842261273848696	0.963002495523594
Merged-chr10-52309375-4	chr10	52308862	52309862	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025705, intron 6 of 10)	intron (NM_025705, intron 6 of 10)	72762.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	4.6612478591717	4.7042934746565	4.84713585301879	4.35947115900748	4.09541579157862	4.53780243362028	-1.0187034962656	0.0226530212909994	0.175377378103315
Merged-chr9-65586695-2	chr9	65586195	65587195	+	685.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-465.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	2.8868996177531	2.65242809602641	2.63137135881484	3.04689675050263	2.72428039756206	2.9614497104681	0.919894937409811	0.225710769570207	0.620677573839554
Merged-chr2-30364114-4	chr2	30363597	30364597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175392)	promoter-TSS (NM_175392)	-136.0	NM_001242407	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	4.30780348764121	4.53445450941077	4.69212208065615	4.13821618795874	4.21959135094577	4.49110910399748	-0.598432136204924	0.196963197407879	0.584854070126
Merged-chr11-116089200-4	chr11	116088701	116089701	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2206.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	4.11775769338263	3.78198171532384	3.81466811568361	3.57266336195113	3.47046761481999	3.56179064267797	-1.31101140712706	0.0195159403454599	0.15884099146844
Merged-chr1-54837862-4	chr1	54837336	54838336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	88551.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.68549285429495	6.4618890494909	6.1519417967102	6.38339374238089	6.08146258927383	6.14563119162495	-0.416270611709459	0.171101009521724	0.549054232994131
Merged-chr7-66388319-4	chr7	66387834	66388834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	7.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	7.44922411993823	7.77487121320817	7.64323498100669	7.79400597812363	7.88195372405385	7.81325619084955	0.290321314038688	0.202612103004414	0.59252027125208
Merged-chr8-84986056-6	chr8	84985540	84986540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4555.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	8.88959740551742	8.64699244644739	8.3585940250475	8.57486177960418	8.7109843051311	8.31373439129086	-0.147542534477154	0.547106276588318	0.859211804963116
Merged-chr17-64660964-2	chr17	64660464	64661464	+	792.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 6 of 21)	L1_Rod|LINE|L1	59315.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.2452688118115	5.61139040875194	5.2059157877541	5.39519203347927	5.57398282273818	5.27094119050816	0.099633905991561	0.78345407470339	0.94720728023945
Merged-chr6-52488017-4	chr6	52487530	52488530	+	859.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4421.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.74188483721686	4.99456713709353	4.89860871612964	4.5754926870622	5.08543407178342	4.77477562927864	-0.0916806747939798	0.827096455247764	0.959351941492659
Merged-chr18-34222269-4	chr18	34221801	34222801	+	810.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-529.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	6.75808049795204	6.98787342508939	6.49597788289996	7.08596998719528	7.29308571127283	7.04912282994795	0.576261619009743	0.0340127535673975	0.225642520434378
Merged-chr3-122019444-2	chr3	122018944	122019944	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-25016.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	2.68404795389716	2.64775898657886	2.62653611665182	2.88644507791405	2.95978516718685	3.06900174297116	1.66686221709065	0.0248108681851586	0.186217103850409
Merged-chr1-135686910-4	chr1	135686402	135687402	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33161.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.71784899638667	3.42294588738858	3.26692516340238	3.36516944419932	3.41372987272079	3.39979891582494	-0.361356951519325	0.557231645254026	0.864114619124975
Merged-chr7-116625598-4	chr7	116625071	116626071	+	974.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	121202.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.03754391830864	3.73471834754018	3.67611929973992	4.07340708468694	3.82313703819176	4.00852533881989	0.418891342967328	0.434451570389544	0.798410009305253
Merged-chr6-54760319-4	chr6	54759795	54760795	+	834.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56621.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	3.29161392550891	3.33477644583783	3.14282510785015	3.24759124351303	3.19177251205349	3.44043262047283	0.112341619885915	0.857850834970372	0.966785186918462
Merged-chr11-70595826-4	chr11	70595315	70596315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20079.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	7.64734891305344	7.27611105260126	7.2575398771851	7.37963805863127	7.53240293249394	7.57943567364558	0.127275016974493	0.609201975628958	0.885062773702803
Merged-chr6-52488934-2	chr6	52488434	52489434	+	647.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3517.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.7969004337133	4.46011384669477	4.3854281787293	4.58313807791013	4.55796399611549	4.04544669143681	-0.339554257755463	0.489932872076278	0.829980359087456
Merged-chr13-59675770-4	chr13	59675245	59676245	+	909.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027307)	promoter-TSS (NM_027307)	39.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	4.1689957438163	4.06672340869446	4.44990611272862	4.96904739502107	4.44574512675565	4.92960502201798	1.41500495940359	0.00271597798279448	0.0390177997224384
Merged-chr5-146948648-4	chr5	146948128	146949128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-29.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	6.05950801170269	6.52729879724295	6.4876193441364	7.28591898296376	7.25401005605999	6.80149875107099	1.1957141001023	5.66286909169027e-05	0.001749706689125
Merged-chr10-80740713-2	chr10	80740213	80741213	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	PB1D10|SINE|Alu	1562.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	5.58993517120346	5.85334520367455	5.97349829292314	5.71628859799148	6.05321878614838	6.05592065226777	0.254189821926372	0.431435734272029	0.796885715050434
Merged-chr11-97315228-3	chr11	97314741	97315741	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-475.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	6.57907509425689	7.33942383230638	6.66128816767617	6.47442451538659	6.71577714957284	6.11719870064795	-0.700054856876163	0.0428193962932221	0.259423061509132
Merged-chr17-71284737-2	chr17	71284237	71285237	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	26274.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.15655384223293	3.10054034845834	2.9946929191457	3.29846970784717	2.87766878573277	3.12960421404222	0.0999097794769739	0.884268525700325	0.973466734537782
Merged-chr16-90213567-2	chr16	90213067	90214067	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7175.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	2.757911086976	3.01937780375336	2.74560246840584	3.11444596022451	2.99858268343307	3.07137169223038	0.982381045400608	0.172383409576656	0.550874826947324
Merged-chr12-24780795-1	chr12	24780295	24781295	+	959.0	f0_balb.idr	Intergenic	Intergenic	-50804.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	3.3006849989374	3.56299515009609	3.92038143886067	3.0985141572449	2.96613836327018	3.12275721139282	-2.32681736819902	0.000897636094915285	0.01656476029845
Merged-chr6-29252321-4	chr6	29251846	29252846	+	954.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20142.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.80656235932779	3.34454512637187	3.36205400667372	4.12076523971591	3.59874229295714	3.61846657733742	0.916986092682609	0.150321093041539	0.517246479850651
Merged-chr17-5747611-4	chr17	5747174	5748174	+	945.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-50983.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.52795704289547	5.36213715370043	5.05759488817464	5.93555135011492	5.82695091054036	5.44390530883619	0.783070418935477	0.0318245843528768	0.216344411479912
Merged-chr5-113840630-3	chr5	113840135	113841135	+	967.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-10134.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	3.49210930620163	3.37859624999973	3.41913788266939	3.63281112178613	3.30617935899234	3.19225022496345	-0.140667755660489	0.82122146284034	0.957942312428027
Merged-chr1-156042063-3	chr1	156041568	156042568	+	937.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	1207.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	4.97273457686595	4.70133586352455	4.33870966856752	5.41018777154559	5.39815386764682	4.92002455723492	1.19339431448733	0.00802884113665198	0.0863037901140799
Merged-chr11-75486696-4	chr11	75486213	75487213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138659)	promoter-TSS (NM_138659)	-64.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	8.37681895719281	8.81088575637281	8.02936113640708	8.37724995927594	8.53019743065937	8.06212232731046	-0.154617415480844	0.581570980906594	0.873316817586325
Merged-chr3-79160181-1	chr3	79159681	79160681	+	789.0	f0_balb.idr	Intergenic	Intergenic	-14306.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.94921696137704	4.83027820290934	4.8706009191125	4.4173028177251	4.66349539012681	4.71003678875073	-0.655028827598424	0.107709689734602	0.438421801122875
Merged-chr9-80066988-4	chr9	80066503	80067503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146003)	promoter-TSS (NM_146003)	100.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	7.33198573261686	7.11323005867183	6.96366781857271	7.22355369575551	6.6634820207695	7.02184458219481	-0.248887427675792	0.377040428970055	0.759599589234051
Merged-chr2-167648817-2	chr2	167648317	167649317	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	12727.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	5.54582454564572	5.34061742110241	5.07586394164847	5.42582211057269	4.73069919924822	4.78453662099823	-0.643137380358451	0.136061800605273	0.492921904596115
Merged-chr7-114276677-4	chr7	114276197	114277197	+	928.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-581.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.15522444050146	4.24232500198509	4.1947247125853	4.34144254488362	4.0832468444084	4.51698453801739	0.314493776639947	0.507183282580895	0.838895570055974
Merged-chr14-79461090-2	chr14	79460590	79461590	+	734.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018765, exon 10 of 10)	3' UTR (NM_018765, exon 10 of 10)	9255.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	3.48580844529799	3.4730172628938	3.41401799744567	3.54431395218667	3.51984629116693	3.37022498214982	0.0917323756774126	0.874334148453753	0.970754540400126
Merged-chr17-27000298-3	chr17	26999790	27000790	+	850.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17745.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	4.72245207551132	5.06203644766097	4.68536373621525	4.64460808468577	4.83224030635961	4.90560646196139	-0.106433179295438	0.796043045229152	0.951396269938008
Merged-chr4-3798603-2	chr4	3798103	3799103	+	744.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER74A|LTR|ERVL	37052.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.23998504484957	3.21344714629241	3.58119135546409	3.29568810597647	3.09450853482532	3.28406564471755	-0.501331262370682	0.433325545219674	0.797793107392544
Merged-chr3-95855860-4	chr3	95855380	95856380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027541)	promoter-TSS (NM_027541)	5.0	NM_001316751	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	6.67700743747585	6.64700361419196	6.41476535557676	6.71883081754744	6.78231260051287	6.35455038198884	0.0818928158875682	0.770760110177055	0.94345245755247
Merged-chr8-25543525-4	chr8	25543045	25544045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	12538.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	5.50669125359865	5.10277753479343	5.23418007299992	5.58660933974907	5.30205329337463	5.51254166165894	0.335014059308516	0.352677532893185	0.740209160221368
Merged-chr2-128125914-4	chr2	128125404	128126404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-134.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	6.49347721858167	6.53343039909644	6.9595973803975	6.51293597723902	6.65224823328553	6.78511890371488	-0.0274390277004533	0.923168912765838	0.982693984177635
Merged-chr8-69866985-2	chr8	69866486	69867486	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151668, intron 3 of 5)	intron (NR_151668, intron 3 of 5)	20406.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	4.10711359133846	3.5189771411655	3.87519529964202	4.60766871062101	3.85949870857038	4.64447974056528	1.5428334883556	0.0102109610770474	0.101886754922528
Merged-chr12-85482526-2	chr12	85482026	85483026	+	684.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8636.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	2.51741583431253	2.5389492541886	2.63323273966539	2.41076705004949	2.4034849081216	2.58348479393863	-0.592882502329693	0.453938515022337	1
Merged-chr7-25119262-2	chr7	25118762	25119762	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163555, intron 4 of 13)	B1F|SINE|Alu	13198.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	2.26295768350287	2.6831146578898	2.48405885634863	2.48482122965844	2.31628414394591	2.68319916300509	0.0648041943601764	0.940454600617	1
Merged-chr17-33917138-2	chr17	33916638	33917638	+	854.4375	f1_balb.idr|f1_c57bl6.idr	exon (NM_020625, exon 2 of 2)	exon (NM_020625, exon 2 of 2)	962.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	3.01004334168162	2.99690013403199	3.16067463291817	3.06310667171133	3.21230815808224	3.44616742534556	0.823226316147804	0.211537756879893	0.603945120913907
Merged-chr17-55721502-4	chr17	55721026	55722026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8890.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	6.65776957442107	6.79861887838965	6.7483466535461	6.52557560458664	6.80010888813363	6.9765013527768	0.0623657468918713	0.816570074711402	0.956731571947764
Merged-chr2-180921809-2	chr2	180921308	180922308	+	699.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-872.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	2.47975162524092	2.60615668407793	2.70386086208797	2.57865511771976	2.6307520435275	2.59083774472807	0.0294748838224771	0.969319636030287	1
Merged-chr11-6625181-1	chr11	6624681	6625681	+	587.0	f1_balb.idr	5' UTR (NM_001130457, exon 2 of 13)	5' UTR (NM_001130457, exon 2 of 13)	886.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	4.19720054893298	4.61251216420751	4.0947016873062	4.48915336998817	4.62223963494208	4.40904013435739	0.457600557300411	0.339329990893668	0.72917126910491
Merged-chr13-106691956-4	chr13	106691449	106692449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2c|LINE|L1	245009.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	3.78871317954623	3.82129314464627	3.88338991798499	3.46099240094821	3.39471822732825	3.75820488983412	-1.01731823949981	0.0721324258208705	0.352744797756153
Merged-chr19-55743146-4	chr19	55742662	55743662	+	895.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001331147, exon 3 of 14)	exon (NM_001331147, exon 3 of 14)	1352.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.67876453065815	6.71542247215343	7.14672052650754	6.9713359405829	6.75570541451913	7.33472803360382	0.273291377686014	0.358200984177198	0.744602774931622
Merged-chr2-60820148-2	chr2	60819648	60820648	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	61290.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.10540306460024	3.76535518792171	4.22480559058796	3.63206667807926	3.74532041474451	3.72965712089411	-1.05843449749674	0.0526920488624968	0.293760112235557
Merged-chr1-136676508-4	chr1	136676014	136677014	+	856.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	6.55685117189601	6.69488817991415	6.20565076978585	6.49395284083787	6.8693926310508	6.45251510011457	0.186255023322915	0.536966072583774	0.854250636315698
Merged-chr11-20240519-6	chr11	20239936	20240936	+	820.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172260, exon 3 of 7)	exon (NM_172260, exon 3 of 7)	8988.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	3.44856204019482	3.60249849085561	3.78803627912819	3.58188728768711	3.64486780144449	3.65698897727434	0.052328065197624	0.925760495261265	0.983283624589872
Merged-chr18-34781305-3	chr18	34780803	34781803	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	4295.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	4.41038329529049	4.30430385166562	4.35558290629689	4.52935797997424	4.44792681898601	4.50923665461371	0.34899377288356	0.418432168958136	0.788591657834186
Merged-chr2-30929907-4	chr2	30929435	30930435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23066.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	6.54546102690586	6.60306559169679	6.3242026501128	6.50761661088341	6.39294934200136	5.92086432350574	-0.312834066681416	0.307274998017478	0.703357212594931
Merged-chr19-5814589-3	chr19	5814013	5815013	+	831.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11841.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	5.53189757759325	5.11441306138021	5.26159641875179	5.19548758951547	4.7657798377369	5.26252241425079	-0.481120690901831	0.224199685670557	0.619020931509579
Merged-chr13-98925664-4	chr13	98925159	98926159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	725.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	8.43459259935495	8.93695079585098	8.38484863061375	8.38561569489224	8.50651383635194	8.30610752323395	-0.29426098652387	0.232079147859137	0.628342229364627
Merged-chr17-65782860-4	chr17	65782338	65783338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	-517.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	7.62353429364683	7.24996652848912	7.29076275578615	7.34109595334888	6.94490535375088	7.0220398107286	-0.429711602492979	0.106328916697116	0.435318662691087
Merged-chr16-36714363-4	chr16	36713889	36714889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	20411.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	4.63298957728359	4.80060135146631	4.73482102859008	5.04152484300743	4.85228710604648	4.87790785192241	0.453327460461094	0.247123639045114	0.644145276280485
Merged-chr4-63583911-2	chr4	63583411	63584411	+	611.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356354, exon 10 of 10)	exon (NM_001356354, exon 10 of 10)	16853.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	3.28783166408317	3.54906420404967	3.9151823686148	3.8379107133015	3.1795268124439	3.48419374819083	-0.259922385133715	0.698724268501084	0.920452297723992
Merged-chr12-69127390-4	chr12	69126884	69127884	+	921.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31802.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	2.34644830720088	2.34253842365973	2.54998728518058	2.26984796573996	2.20723637083677	2.37425323444182	-0.872922043410056	0.30316876816981	1
Merged-chr10-37397638-8	chr10	37397136	37398136	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258710.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.12758661014397	6.39965644954527	6.16173629896075	6.50166685777807	6.48486227521697	6.36628866299525	0.35281879993888	0.206130079580009	0.596808227902619
Merged-chr7-16219654-1	chr7	16219154	16220154	+	740.0	f0_balb.idr	intron (NM_001285931, intron 1 of 16)	intron (NM_001285931, intron 1 of 16)	2339.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	2.94765338133047	3.0571162229418	3.04361752927327	2.75590073473741	2.86747372427848	2.93928608970478	-0.785942054432511	0.259001920757736	0.656583244140075
Merged-chr1-74712989-5	chr1	74712432	74713432	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024264)	promoter-TSS (NM_024264)	-603.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	6.69034479653634	6.83720568255026	7.01260111342145	6.72826851416232	7.02334977355685	6.89490365026856	0.0699240242715701	0.789901857006726	0.949311112850285
Merged-chr10-81643738-4	chr10	81643210	81644210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-5359.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	7.25526461755435	7.66747967198367	7.3765923799863	7.43485759590301	7.04296271493228	7.25356218553187	-0.292559087375153	0.264875510384846	0.662730378521237
Merged-chr10-68134735-4	chr10	68134246	68135246	+	953.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	143980.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.38307164368246	5.58962737783502	5.45171267030261	5.35284267133548	5.36489709182458	5.1242068781702	-0.362279774680489	0.293825230716486	0.690424156263798
Merged-chr3-105898635-4	chr3	105898264	105899264	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	(TCCC)n|Simple_repeat|Simple_repeat	-5657.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	5.94849281469258	5.37602521903151	5.85854689247992	5.36989321975529	5.34136674556004	5.62266706673222	-0.572144760609421	0.111414129438487	0.445871935353881
Merged-chr10-53595730-2	chr10	53595230	53596230	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027830, intron 8 of 13)	intron (NM_027830, intron 8 of 13)	-1231.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	3.44003854451951	3.46677753688768	3.25039736042282	3.33193538214826	3.18698354373967	3.32257456292553	-0.467036318676918	0.446777870032759	0.806122541261987
Merged-chr1-9857764-4	chr1	9857279	9858279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	RMER13B|LTR|ERVK	9498.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.8230086625153	4.79162417588922	4.99731490799574	4.95037551429589	4.85175090251579	4.9576211798987	0.113434480624737	0.76669398676066	0.942542894190371
Merged-chr1-180261625-2	chr1	180261125	180262125	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5325.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	6.1705343161917	5.9415574914044	6.07226342930463	6.26006779728057	6.13717927706531	6.54817334024694	0.42332083295603	0.15674731773291	0.527613063058663
Merged-chr12-54959771-4	chr12	54959276	54960276	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	L1MB4|LINE|L1	26560.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.42311752393677	4.33592414987898	4.30177213157151	4.41077380520253	4.55119819176703	4.45874276403912	0.309796948269401	0.476498014694927	0.82257619929543
Merged-chr6-83453293-2	chr6	83452793	83453793	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	3099.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	5.03828382234507	4.93290186739093	5.32613494404538	5.02682226036353	4.65528839263444	4.97912141794586	-0.456033119671765	0.255400622736978	0.652536438753136
Merged-chr9-21798678-4	chr9	21798182	21799182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145611)	promoter-TSS (NM_145611)	-136.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	5.55964935098575	5.95927860001448	6.23308435116032	5.87918992205882	5.7187319558281	5.66139918117069	-0.318543584433347	0.355207104585043	0.742185991972284
Merged-chr18-61105785-4	chr18	61105303	61106303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001037859, exon 2 of 22)	5' UTR (NM_001037859, exon 2 of 22)	231.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.98490965079322	6.9279941415234	6.99330101351665	7.10209498349178	7.08697630288006	7.26023949929906	0.272381551933568	0.253256199578454	0.650656162496163
Merged-chr6-82751195-4	chr6	82750697	82751697	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	23257.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.88319092217792	4.78065240930155	4.57720252601525	4.95216772220921	4.50828948207682	4.51197504943452	-0.193169400590796	0.656894535920398	0.904720876497753
Merged-chr16-91356242-2	chr16	91355769	91356769	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-16514.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.8577149695426	6.72881648064678	6.65288120560843	6.75700028315915	7.09922390264652	6.91232246013243	0.282767163796755	0.278982675536939	0.676449294675764
Merged-chr3-88138924-4	chr3	88138402	88139402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	8.94184711658523	9.1161146425538	8.69532458626418	8.88720661814436	9.16939773247569	8.63929370235902	-0.0140530709585611	0.953954815387666	0.989495550016789
Merged-chr4-129067756-4	chr4	129067264	129068264	+	784.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9493.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.84608326244307	6.87089667623233	6.63955803843517	6.87792067639064	7.17379407925975	6.91815437867798	0.319123988908658	0.218840191844955	0.613106218284007
Merged-chr7-145047940-3	chr7	145047494	145048494	+	699.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108069.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.64473190649856	4.86702418424136	4.53379132267325	4.59965420662316	4.47146912171342	4.68341434858857	-0.281075545040218	0.505650167970523	0.838177729332582
Merged-chr2-4504831-4	chr2	4504322	4505322	+	874.208374	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-54932.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.7795562825605	3.68732208064096	3.80088865624147	4.45219704045787	4.23201872593322	3.98031654520482	1.46283266149492	0.00464951962622214	0.0582416582425732
Merged-chr14-121937833-4	chr14	121937354	121938354	+	840.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-22080.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.38262799481856	6.10567483886919	5.81890915250827	6.10169827245571	5.96137690779922	6.34667220994493	0.00519891425831226	0.987157568803144	0.997161899445921
Merged-chr16-36706651-3	chr16	36706142	36707142	+	889.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	12664.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.93226571711296	3.91766322797083	3.74526890781566	3.69435540750101	3.84171836542775	3.86732250894651	-0.223675761830295	0.668831947865826	0.909385924601941
Merged-chr9-109038616-4	chr9	109038095	109039095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284332)	promoter-TSS (NM_001284332)	28.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	5.98827172441533	6.00296641885491	5.82524972563253	6.00783502630315	6.04290358991929	5.91233692940911	0.0793284300372159	0.787551988977481	0.94877064431094
Merged-chr13-64129793-3	chr13	64129296	64130296	+	786.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-466.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	5.40003292657877	5.6456589253358	6.13896358897609	6.10895312543329	5.98970854771472	6.1989297921675	0.608980325163356	0.079555511054605	0.373049291949513
Merged-chr7-98294282-3	chr7	98293769	98294769	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	L1ME2z|LINE|L1	15273.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	4.47619785927729	4.4790755595884	4.72447127543517	4.52323259979656	4.35114786825596	4.47531020386719	-0.272224184208534	0.528706263335785	0.850585575598857
Merged-chr4-46450990-4	chr4	46450489	46451489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130889)	promoter-TSS (NM_130889)	63.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	6.80558326091386	6.8079501177857	6.76559065426835	6.71480172775842	6.65408143628651	6.56066370694602	-0.229919312626307	0.359316705499213	0.745475101759799
Merged-chr3-135687125-2	chr3	135686625	135687625	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4422.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.24227394557031	5.39520802896657	5.46969383865415	5.24201846425152	5.38002322079963	5.73877508204833	0.178767701677757	0.61679355123152	0.888526130276005
Merged-chr8-85027221-2	chr8	85026721	85027721	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026760, exon 1 of 3)	exon (NM_026760, exon 1 of 3)	388.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	8.32173561760243	8.81430588349907	8.01933697602181	8.34003280127231	8.26565108644008	8.23157708212611	-0.218024096774761	0.415818932716748	0.786744775876465
Merged-chr15-79742568-4	chr15	79742046	79743046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205345)	promoter-TSS (NM_001205345)	-10.0	NM_001205345	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	8.94632783544462	8.50873681660715	8.16875253604775	8.55107038669552	8.22802001613091	8.11730692419619	-0.3795702210088	0.171895353733089	0.550350863573931
Merged-chr12-26456563-4	chr12	26456081	26457081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021384)	promoter-TSS (NM_021384)	-129.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	7.64808626424599	7.76427024320235	7.5653546870756	7.7095539080119	8.03629319353423	7.59249782528966	0.197983747474664	0.415233285610386	0.786190894237809
Merged-chr8-46150911-2	chr8	46150411	46151411	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12740.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	5.43113399706949	5.80335244814562	5.31917004351156	5.93530135725177	6.05177692223241	5.8510452056704	0.730669127321713	0.0305848585025877	0.211511378514238
Merged-chr19-40684271-4	chr19	40683764	40684764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24494.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.49693627482104	7.4961694202044	7.22973384380082	7.27480689739691	7.60495615714873	7.28686960637937	-0.0197829419652872	0.936832899021072	0.986037792257163
Merged-chr7-64285767-4	chr7	64285265	64286265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1905.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	5.00057775218828	4.95186361609352	4.80007977194313	4.97862871147893	4.75769059019149	4.7048383548509	-0.234854430546771	0.549906894939722	0.86050509437616
Merged-chr14-26636869-4	chr14	26636379	26637379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	7.28400552441055	7.19091936957394	6.97233138952148	7.36791857262203	7.39493782942626	7.39905583066889	0.332200838755636	0.162768621116897	0.536188662408322
Merged-chr3-127289067-3	chr3	127288564	127289564	+	965.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	RMER5|LTR|ERV1	119994.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.43296050236824	3.2385869671107	3.5731421070321	4.36006185329842	4.0529510299948	3.91987580828803	2.46481397206241	3.47698760785046e-05	0.00116705600997991
Merged-chr6-115470024-4	chr6	115469516	115470516	+	921.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47950.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.15833024522592	5.92768303728816	5.95189966094032	5.83996760621207	5.87695869538838	5.78974737458694	-0.316966946947889	0.290607465329733	0.688463987220644
Merged-chr3-100920868-4	chr3	100920364	100921364	+	865.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1629.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	4.18784529631019	4.1964247676033	3.96341346221783	4.09547021872201	3.95017282135848	3.98247979231615	-0.342514175025126	0.484411708474788	0.826842476948103
Merged-chr6-92988375-3	chr6	92987826	92988826	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47744.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	6.56303594719165	6.64173258955971	5.93540186993224	4.27668016040209	3.8548906087992	4.37517164050614	-5.75765143382609	9.17536417274412e-22	8.444281304397e-19
Merged-chr3-152402510-4	chr3	152401998	152402998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	5814.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	6.51725235726149	6.54203420158678	6.44074763121588	6.47479121007255	6.38445724492734	6.26470471588991	-0.198109714486258	0.458175433283074	0.812910176395966
Merged-chr7-80269196-4	chr7	80268671	80269671	+	923.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-484.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	6.19811090411194	5.81734532681749	6.56703367401512	6.2765207606073	6.49105763360038	6.20888839695045	0.195214824562548	0.554678537925567	0.86290101194412
Merged-chr13-98832610-4	chr13	98832112	98833112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17163.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	6.8851070555096	6.77154974048816	6.81067492564387	6.58781737484885	6.91591052344758	6.80932643703048	-0.06439561326484	0.803589203730948	0.95351077179348
Merged-chr18-83828157-1	chr18	83827657	83828657	+	1000.0	f0_balb.idr	Intergenic	Intergenic	258405.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.45644022365783	5.40969818690079	5.46222819285112	5.11611067489281	5.21270224080213	5.40936255038457	-0.391997875470849	0.253310936789319	0.650720768990325
Merged-chr19-28917992-4	chr19	28917494	28918494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45926.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	5.74648834398672	5.84032031718989	5.1240689875724	6.77657085817326	6.56072938981919	5.87044002333144	1.46487672103447	0.0270110983366455	0.195659395002663
Merged-chr14-21854946-4	chr14	21854582	21855582	+	856.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-6172.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	2.50832515717117	2.56857948603758	2.43860195170477	2.70201267221422	2.54661956568426	2.76578612133758	0.934806655948208	0.234647869945672	1
Merged-chr4-109258316-2	chr4	109257816	109258816	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-21959.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.84027462016358	3.52299517914099	3.74460567358406	3.70717945159467	3.42464878278522	3.91072147728371	-0.0706077252776315	0.903431246979389	0.977827650905621
Merged-chr5-120522862-3	chr5	120522358	120523358	+	697.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	11666.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	3.63526927697833	3.51850041230445	3.57438889305976	3.57100367104174	3.48880376610735	3.84491825256337	0.201258302795199	0.723042437282824	0.928989158354973
Merged-chr2-25626919-2	chr2	25626419	25627419	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007995, intron 4 of 9)	intron (NM_007995, intron 4 of 9)	1055.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	6.07629052937917	6.19680092556705	6.75839267740451	6.63092756517534	6.46934786146602	5.89920607981777	0.00965573504861476	0.978462953087272	0.995146803081243
Merged-chr1-152602363-2	chr1	152601863	152602863	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	22854.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.82490704283605	5.50691285695786	5.56831146766545	5.73087936868406	5.72802532624706	5.93657297670354	0.274186907963718	0.397214814640507	0.774129296091048
Merged-chr4-147927868-4	chr4	147927377	147928377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 6 of 18)	intron (NM_011122, intron 6 of 18)	8899.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	5.65885394624984	5.70007829037349	5.93300172830445	6.10769798550455	6.1318128963033	5.76995289784075	0.465924824194537	0.138632129102772	0.497532982462087
Merged-chr2-18392812-4	chr2	18392269	18393269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007869)	promoter-TSS (NM_007869)	61.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	6.60116312015487	6.81724136418342	6.74495128952048	6.31354905475998	6.1962862544232	6.42064572780952	-0.675946302389018	0.0118249127485194	0.113004173650948
Merged-chr11-75171737-4	chr11	75171228	75172228	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1473.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.97268813765802	4.47539283602681	4.92909270834744	5.10361627474931	4.79876503650305	5.09575853025221	0.426143651843805	0.311929804075401	0.706795039274351
Merged-chr7-81843921-2	chr7	81843408	81844408	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-14477.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	4.22234505861412	3.94984755147489	4.19610813311292	4.54877955240409	4.53101152609138	4.5277929094141	1.09261442986755	0.0166234005412022	0.142818782884084
Merged-chr16-57549229-4	chr16	57548736	57549736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177871)	promoter-TSS (NM_001177871)	-6.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.69105699246404	8.67082368124085	8.37188055846369	8.6069913934092	8.65072482117093	8.28996621000258	-0.0824024011466839	0.718471196260369	0.927364481477278
Merged-chr17-71286927-3	chr17	71286394	71287394	+	832.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24117.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.30647816397407	7.51582650866593	7.34724149611943	6.63239794515783	6.5906018218993	6.34470460673972	-1.3120595989327	3.28974181824928e-07	2.03367635373615e-05
Merged-chr7-30998235-4	chr7	30997755	30998755	+	847.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	16334.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	3.30021048124961	2.98360384986175	2.92413585143109	3.39795343133925	3.01438593332896	3.41518787649604	0.836697887094278	0.237164661888461	0.633631301431805
Merged-chr7-29171231-4	chr7	29170726	29171726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_182694, exon 2 of 3)	exon (NM_182694, exon 2 of 3)	1016.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	4.83110262520423	4.48485762762034	4.74825942369065	5.74343089515734	5.31611022508203	5.25796136718778	1.61849235036016	5.71362421692056e-05	0.00176211728629179
Merged-chr18-12941812-4	chr18	12941338	12942338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207530)	promoter-TSS (NM_207530)	3.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	7.35781982109065	7.88455282874357	7.44397208443115	7.46301316527827	7.4434910354829	7.08034450064138	-0.354246783471543	0.196095433946261	0.583882577099452
Merged-chr1-180428020-5	chr1	180427569	180428569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55435.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	6.23716645532854	5.87514973786912	5.51832921586967	5.87716090018333	5.65925729321194	5.61297718971903	-0.356232834132064	0.312497523663172	0.707179796811586
Merged-chr15-11765106-4	chr15	11764624	11765624	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	140550.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	2.98353434840085	2.59553506262272	2.84066837740235	2.76849869247155	2.88444397611166	2.9136738709674	0.195389222553011	0.793089214937596	0.950243729178677
Merged-chr15-99105659-4	chr15	99105223	99106223	+	878.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6239.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	2.54785547502176	2.56928449207344	2.60488166695608	2.54007345797882	2.37221950439998	2.67823570558139	-0.253552116071474	0.748415663427421	1
Merged-chr1-151342426-2	chr1	151341926	151342926	+	548.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2060.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.52708477912853	5.62481916666536	5.48568846210045	5.48824241600412	5.70383313643419	5.15158062316198	-0.122757160285658	0.729603690159917	0.930635866770147
Merged-chr14-31407053-2	chr14	31406553	31407553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	B1_Mur1|SINE|Alu	10624.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.51292927527845	6.6592088822861	6.25166147064637	6.1024452437641	6.02938393026892	5.99782894076513	-0.749717831748941	0.0093638826188835	0.0961082946776931
Merged-chr11-20193241-4	chr11	20192753	20193753	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8159.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.78984985461262	4.97521460043569	5.05773184163432	4.74163499814839	4.79377893382904	4.6397003847915	-0.467664595982745	0.237626362579631	0.634122003684586
Merged-chr19-53600069-4	chr19	53599659	53600659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007790)	promoter-TSS (NM_007790)	-237.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	7.52835737918239	7.53984763446699	7.27691096901339	7.43596395942908	7.38077930760983	7.23841473127809	-0.15094277983972	0.522761417887548	0.847733418668009
Merged-chr11-117306859-4	chr11	117306343	117307343	+	797.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24872.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.32568744101093	3.89858040696791	4.09085581261492	4.01378078116319	3.83263220978402	4.06490418179912	-0.442971298504655	0.387323047736199	0.767583116195701
Merged-chr3-89861327-4	chr3	89860832	89861832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29962.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	5.87856905241489	5.96984919499631	5.60159956756015	5.75412338861299	5.76393415516882	6.08332083234526	0.052880507852948	0.870154935739206	0.970040888169719
Merged-chr11-30212076-2	chr11	30211576	30212576	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175836, intron 1 of 34)	B1_Mus2|SINE|Alu	7696.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	2.38005791250978	2.60561709034941	2.58201910205018	2.51787399563937	2.41129273722302	2.65540944761559	0.00999733100985451	0.990035328514252	1
Merged-chr13-47234059-1	chr13	47233559	47234559	+	901.0	f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	40056.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.82547326999995	4.96269295987074	5.01734601058801	4.52582699128377	4.27377577136425	4.64850502095359	-1.08215345670146	0.0100537434797274	0.100728704089243
Merged-chr12-87147583-4	chr12	87147080	87148080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-127.0	NM_001252556	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	6.4653653764148	6.64301717846399	6.65602309098047	6.50913454819496	6.44430684366347	6.61800246273475	-0.109887924411006	0.677046332995496	0.912673286392917
Merged-chr19-44408790-4	chr19	44408302	44409302	+	934.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1093.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	6.5663752852305	6.53455538562842	6.56134636860377	7.14299794133664	7.24030720477314	6.36738669005488	0.670955044773258	0.0342065402429608	0.226320515788967
Merged-chr10-78473551-2	chr10	78473051	78474051	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8603.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	2.51528580104699	2.44340931963491	2.63180177204358	2.40758409729816	2.42912305229033	2.64417450313429	-0.213699427607706	0.788294545887209	1
Merged-chr5-110770823-4	chr5	110770317	110771317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173066)	promoter-TSS (NM_173066)	-100.0	NM_173066	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	7.14322123988073	7.0210701233356	7.01295258025274	7.08206499255497	6.64530967302059	6.69950359814165	-0.363750873392165	0.172584821349692	0.551226813025854
Merged-chr5-115155179-2	chr5	115154679	115155679	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2997.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	2.89525166741056	2.74672053047369	3.02769035574414	2.72374971998332	2.6969508313356	3.36235543881908	0.318354557426335	0.682988077442706	0.91523316791368
Merged-chr1-153754844-3	chr1	153754338	153755338	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	5412.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	4.569404646739	4.34071055848027	3.94419449758196	4.60396585635912	4.12784407277592	4.01799697208816	-0.0975745542559977	0.85686653449707	0.966628636076984
Merged-chr13-19843581-3	chr13	19843089	19844089	+	954.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19332.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.63807198469472	3.63870252167602	3.89192784520732	3.41965193326388	3.10596779199946	3.72553685786072	-1.04258320616675	0.103926538061046	0.429861280458492
Merged-chr6-13839326-4	chr6	13838834	13839834	+	930.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145066, intron 1 of 3)	intron (NM_145066, intron 1 of 3)	608.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	5.01114231963989	4.87744383864186	4.83236857948946	4.83266500496626	4.72461344369031	4.86026438174221	-0.250061330448322	0.517636603883535	0.844713047787325
Merged-chr11-75167509-4	chr11	75166971	75167971	+	865.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	681.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.78397743129492	4.96973444502565	5.20673007758465	5.17828558091154	5.23224468048589	4.84877918170613	0.252947727787349	0.521485428971998	0.847076250198493
Merged-chr2-60810804-4	chr2	60810292	60811292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	70646.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.94179907793003	5.8934941615141	6.23172681664744	6.04929961626675	6.02840614688125	5.82337397546045	-0.0735503932062936	0.809851110599378	0.954819723409146
Merged-chr11-21240971-3	chr11	21240466	21241466	+	767.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1934.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	5.52195265680596	5.51438570244115	5.41075343738494	6.57138663966033	6.56138374993409	5.96738344017399	1.60211554101186	1.18346485219417e-06	6.29610024096269e-05
Merged-chr2-90474986-4	chr2	90474484	90475484	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001135657, exon 2 of 26)	exon (NM_001135657, exon 2 of 26)	4190.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.43699317457635	5.2604624317237	5.44032637032273	5.51835829857821	4.96895457707527	5.19152896604787	-0.270597585655242	0.470243888472578	0.819394137837651
Merged-chr9-111571893-2	chr9	111571397	111572397	+	786.5	f0_balb.idr|f1_balb.idr	intron (NM_016853, intron 10 of 10)	ORR1E|LTR|ERVL-MaLR	118451.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	2.54904726724676	2.66982933404796	2.85583539750466	2.61372820391671	2.53195906313556	2.62753191325289	-0.577664968582691	0.452030812594016	1
Merged-chr8-71789241-2	chr8	71788743	71789743	+	955.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63562.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	4.7207436475076	4.85928280895441	4.45385913595558	5.19039823441651	5.20867319072903	4.83440943808595	0.870217169295052	0.03650415114475	0.235093004773412
Merged-chr17-34605088-3	chr17	34604585	34605585	+	853.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-776.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	7.61400120654362	7.50654627271602	7.57462985820492	7.81615345274214	7.9054491865937	7.89116863482658	0.442256114937262	0.0398936839274972	0.248530976667493
Merged-chr4-117908446-3	chr4	117907907	117908907	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146152, intron 2 of 19)	intron (NM_146152, intron 2 of 19)	6592.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	3.3957739464701	3.54104713406843	3.49280778326944	3.56718313127635	3.54145019056135	3.45246580564151	0.168745076198097	0.768292517772523	0.942864224975033
Merged-chr1-87851424-3	chr1	87850895	87851895	+	879.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-1892.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	4.35919390874011	4.05781950563153	4.74685438549065	4.01616367403456	3.98525282501314	4.45007508923507	-0.668721128819751	0.203826466422328	0.594024469127845
Merged-chr17-28622493-4	chr17	28622007	28623007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016795)	promoter-TSS (NM_016795)	14.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	5.57373176184919	5.33609928912396	5.5944162060012	5.61104961962721	5.30239022193981	5.54706330501219	-0.0292151228829561	0.931971037081776	0.9850171612471
Merged-chr2-156294362-2	chr2	156293862	156294862	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-18111.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	4.08129871461629	3.84049886650137	4.19684608871397	4.06268737747741	3.96659630106703	4.22038633784194	0.115212236217049	0.817959345528163	0.956835450074313
Merged-chr7-104287775-5	chr7	104287284	104288284	+	733.853333	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310602, intron 1 of 7)	intron (NM_001310602, intron 1 of 7)	322.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	4.00774509591032	3.93312215499155	4.47654928732443	7.00392699527575	7.54085249654714	6.81730793847824	10.3571054522958	1.32961005151678e-17	6.07880182234113e-15
Merged-chr2-18903841-4	chr2	18903301	18904301	+	960.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355149, intron 3 of 10)	intron (NM_001355149, intron 3 of 10)	94320.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	5.7981084302044	5.8329427451702	5.32395199221029	5.58219103707801	5.42829925219803	5.28650020750955	-0.454985532725313	0.19900494621456	0.587423864896856
Merged-chr14-75045334-4	chr14	75044845	75045845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 9 of 13)	intron (NM_198642, intron 9 of 13)	29318.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.09199959066415	5.00354549894206	5.17253903855997	5.27460093551768	5.41568605844114	5.61220765003281	0.703870712733938	0.0470189940652771	0.274551330398848
Merged-chr11-69364616-3	chr11	69364075	69365075	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 2 of 39)	intron (NM_146019, intron 2 of 39)	4851.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	5.92051741224028	6.06335774719991	5.93729496614604	5.93234198877559	5.94942054481553	6.15280900864631	0.051696177427655	0.861063433837164	0.967789299492425
Merged-chr12-17772764-2	chr12	17772264	17773264	+	941.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	81955.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.46941068104697	4.33928248036228	5.09422355555445	4.62901636615352	4.67572310225894	4.90385455329674	0.166949408789287	0.722476734352061	0.928821151735982
Merged-chr6-90598667-2	chr6	90598167	90599167	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 22 of 22)	intron (NM_001356412, intron 22 of 22)	-6213.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	3.19798363232587	3.17757365674622	3.23125557649222	3.42843883835371	3.4096109612226	3.41676666615517	0.875875059484659	0.147688569489823	0.512784080538669
Merged-chr10-111031644-4	chr10	111031147	111032147	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21581.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	4.5425661191408	4.67636990177449	4.52623982255312	5.00700573032655	4.72005364773255	4.25864896948453	0.283863296311572	0.5403716777983	0.85632302227606
Merged-chr15-6369364-6	chr15	6368832	6369832	+	846.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-17416.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.52411021383935	5.6981789500609	4.95358028198804	5.05065091590382	5.30295225858754	5.06021223889469	-0.579618736335975	0.149561835088455	0.515980886194382
Merged-chr10-127736343-2	chr10	127735843	127736843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3195.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	6.36315064253456	6.35589520432031	6.22391574274058	6.15167900988589	5.95342607357895	6.39934597671316	-0.255138044514859	0.385827258729694	0.766674506964127
Merged-chr18-12761316-4	chr18	12760818	12761818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19963.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.51328196155598	4.64545748763693	5.03108870205516	4.65537517218774	4.49589263653525	4.75401650355192	-0.245818921083354	0.571863043417632	0.869731184538705
Merged-chr15-74967772-2	chr15	74967280	74968280	+	858.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12674.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.99286394727757	7.05180246003792	7.00210754185104	7.08705981297526	7.31882324880356	7.04663888763883	0.223608619389874	0.359246297727742	0.745440547165336
Merged-chr7-31084314-1	chr7	31083814	31084814	+	700.5	f0_balb.idr	Intergenic	Intergenic	-7617.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	4.69114119580076	4.70042602784323	4.21424306022014	3.62573582624147	3.66973763641106	3.984198573321	-2.39583836601332	9.200831671978e-06	0.000372365175954254
Merged-chr4-44012605-4	chr4	44012110	44013110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-33.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	7.72581293022948	8.00426333775074	7.79416099505046	7.72132007714393	7.53837904276316	7.65788528077183	-0.303449996836548	0.183063463858341	0.566085379224821
Merged-chr8-84846996-4	chr8	84846501	84847501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007591)	promoter-TSS (NM_007591)	-70.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	7.41124365059965	7.33992895582608	7.25871273638004	7.41111615040718	7.84053229040858	7.02794545119421	0.211096505558698	0.463855942241861	0.816038286358001
Merged-chr3-87000809-2	chr3	87000309	87001309	+	636.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1469.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	4.26629145383257	3.8979236159799	3.83708428286114	4.01158965485516	4.28252121733474	3.90907190278252	0.187211058599627	0.725025436632152	0.929494584791201
Merged-chr18-38922474-3	chr18	38921975	38922975	+	910.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-3776.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.49551632609011	3.31231710916996	3.37447031238759	2.86470120102882	2.91118048474759	2.9105727358345	-2.37938456927086	0.00096301717372699	0.0174996141060221
Merged-chr16-92862832-2	chr16	92862307	92863307	+	885.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-36733.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.21090187397638	4.06791940878888	4.13298510520358	4.2815980979843	4.2927131195398	4.00317093156794	0.194074986982393	0.684946271923213	0.916057018456004
Merged-chr6-16964113-4	chr6	16963635	16964635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65694.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.25382867259925	4.98781500724237	5.15197162311028	5.13936256228329	4.99658952317211	5.45494585535014	0.130085287238752	0.731775270669533	0.931535693390145
Merged-chr1-172503529-2	chr1	172503029	172504029	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	3283.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	3.59972740618413	3.11918099247042	3.39785182001795	3.6356135274316	3.4673003129643	3.4701439521997	0.507957826399478	0.41842027611611	0.788591657834186
Merged-chr17-23653667-2	chr17	23653127	23654127	+	832.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6879.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	3.0080576067851	3.04072591758088	2.86638918780131	3.04551645347273	2.99988965266738	3.12207886792905	0.344698136160374	0.609046199180485	0.885053989692691
Merged-chr7-68157619-4	chr7	68157118	68158118	+	961.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	106615.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	4.42751330117513	4.618104082384	4.25624969224328	4.36733086046426	4.56908906961411	4.70750152760665	0.246748652818949	0.58289370889591	0.873826743013405
Merged-chr8-94340995-4	chr8	94340501	94341501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 11 of 24)	intron (NM_019415, intron 11 of 24)	11793.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	3.92474701826658	3.39859547333913	3.81778259247017	3.56140519332887	3.21819238128545	3.63691278292647	-0.885188955608796	0.15879489166165	0.530592366400552
Merged-chr7-30325592-4	chr7	30325113	30326113	+	881.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3238.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	2.84110075646416	2.88859558318456	2.91597120099537	2.93065922982987	2.90645058163688	3.04667502775655	0.378777712626945	0.579222328908585	0.872437865758865
Merged-chr11-29548213-4	chr11	29547697	29548697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-157.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	7.28572607238792	7.66269297579175	7.47129409709274	7.65388872455467	7.76972441893603	7.4973687814112	0.241887984350329	0.320483407446955	0.714329206729224
Merged-chr10-78184499-2	chr10	78183999	78184999	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029546, intron 1 of 20)	intron (NM_029546, intron 1 of 20)	650.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	4.76885723853434	5.13176104601873	5.43165994914106	4.93278035755696	5.2288185226922	5.034256216536	-0.108123884499788	0.791616787291066	0.949797147757395
Merged-chr16-58507870-4	chr16	58507356	58508356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	15570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	8.03974346339416	7.76848444710032	7.61355589391056	8.09211186654518	8.54123743366512	7.86249246454639	0.540191401651454	0.0489191761596183	0.280988815543232
Merged-chr1-167308639-4	chr1	167308098	167309098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039483)	promoter-TSS (NM_001039483)	-72.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	7.18662480084847	7.68767767883856	7.22156164804539	7.41445939649379	7.13708706848924	7.00386838810808	-0.28626381398142	0.303242398962689	0.69988332222588
Merged-chr16-92674928-3	chr16	92674425	92675425	+	840.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	22404.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.56252864714094	6.54703560962573	6.42862190645395	5.88973858644352	5.96003364101655	5.80600491382125	-1.0487375264249	0.000203670565724162	0.00508919532515797
Merged-chr5-136568972-4	chr5	136568463	136569463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-11653	-1473.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	4.29593893358809	4.35432650207087	4.08595477016022	4.23962022199873	4.33574499057602	4.10547177655223	-0.0551244788955694	0.906916124781415	0.978868492078838
Merged-chr15-27616372-4	chr15	27615901	27616901	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013792, exon 4 of 7)	exon (NM_001013792, exon 4 of 7)	14292.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	4.0242890248099	4.02850887724572	4.33614325773276	3.70279480178029	3.76770226183379	3.96781613569116	-0.971666852292461	0.0617922305751316	0.322641059343345
Merged-chr15-76716052-2	chr15	76715552	76716552	+	861.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145471)	TTS (NM_145471)	5411.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	4.98035939242109	5.11197725144512	4.77992609205805	4.70565473965927	4.44168188811764	4.59981906164064	-0.903010062718158	0.0276255063736858	0.198297371837616
Merged-chr9-82829937-4	chr9	82829473	82830473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022986, exon 1 of 4)	5' UTR (NM_022986, exon 1 of 4)	167.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	6.78104202567213	6.84457533697212	6.00702063924029	6.41158174885392	6.40660862210028	6.06952860108136	-0.47944888814927	0.161084736417151	0.533729094405222
Merged-chr15-78327849-2	chr15	78327349	78328349	+	887.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	1859.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	5.35711855830827	5.44930314410984	5.66447555193457	5.62824796317692	5.60676515716558	5.47767055613806	0.171534436669908	0.604040363968079	0.882941773157478
Merged-chr8-56315376-4	chr8	56314874	56315874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	20822.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.63526270437354	5.75075344650056	5.71514774204275	5.49452611886082	5.41584134652398	5.77662530544639	-0.265182020649665	0.417303336162722	0.787951515900482
Merged-chr6-39206136-4	chr6	39205598	39206598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 1 of 19)	CpG	675.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	8.81739578405574	8.89467892299436	8.5782968785489	8.64202990171181	8.54831340993059	8.56028147495975	-0.263137738055802	0.207155426939228	0.597920729067479
Merged-chr1-36471485-4	chr1	36470978	36471978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033570)	promoter-TSS (NM_033570)	-119.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	7.20018007850335	7.15745922944975	7.30675603400372	7.17336137706786	7.12293513277133	6.86071137383426	-0.228923503944457	0.351026585092236	0.738927106247438
Merged-chr12-99993700-4	chr12	99993196	99994196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MIR|SINE|MIR	29197.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.56356476270016	7.44488247550672	6.83888318478298	6.9094799645249	6.91409136858378	6.50850328008818	-0.801484762593076	0.00856624556600342	0.09041991133528
Merged-chr10-12875621-1	chr10	12875121	12876121	+	659.0	f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13886.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.40820940861126	4.10959665382701	3.77980610000665	4.24702957772237	4.3858843929211	4.27135010951777	0.45944921819633	0.377575094257918	0.759978294360939
Merged-chr16-31939810-2	chr16	31939310	31940310	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	B1F|SINE|Alu	5959.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	5.32368988806711	5.09118170434231	5.28165559094626	5.10320922016901	5.17970507125959	5.37474678170822	-0.0327277228284365	0.927247410650073	0.983584626679457
Merged-chr7-80083440-2	chr7	80082919	80083919	+	728.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 2 of 4)	B4|SINE|B4	-8162.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.24539445214361	3.12969028027402	3.66189388401475	3.10877818042119	2.95197024202377	3.16281157650269	-1.20099763592255	0.0782585170539483	0.369397247959209
Merged-chr18-52463691-4	chr18	52463154	52464154	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2039.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	2.49452251674464	2.57511583051299	2.47459006156291	2.97169545657475	2.86838046182119	2.93914929064847	2.34604995501694	0.00403386124173485	0.0522411713933499
Merged-chr3-38102672-4	chr3	38102154	38103154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105465.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.14504009650532	4.21563932574021	4.17423446057543	3.98241081983212	3.98789393951081	4.05507507942199	-0.50248486526246	0.291401177095902	0.689051679650718
Merged-chr18-12925444-2	chr18	12924944	12925944	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	16397.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	2.6320612025841	2.67712167237608	2.52886767375484	2.63836900482196	2.42289375948132	2.79091834990915	0.0252495844144532	0.974597324452028	1
Merged-chr3-8983944-4	chr3	8983439	8984439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19793.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.41240864267912	8.29863775493672	8.076590949769	8.14994369658348	8.52588745909151	8.06648798386433	-0.00453494215768386	0.985118231684426	0.996873682039026
Merged-chr4-155487948-4	chr4	155487441	155488441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3420.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	6.42191281262521	6.2416530722875	6.57015088882089	6.58429815576165	6.83434476906742	6.35470967924249	0.333882359200053	0.250863534367914	0.648248729142217
Merged-chr19-38042980-1	chr19	38042480	38043480	+	792.0	f1_balb.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	597.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.11828842657271	6.32469902433796	6.29394452726574	6.13415868092665	6.31568882792215	6.4098947279667	0.0687022370697101	0.80848410014689	0.954683711776353
Merged-chr14-66232423-1	chr14	66231923	66232923	+	717.0	f0_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18599.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.46570061157216	6.13658443956208	6.22808158462184	6.54358887883906	6.39175645339687	6.60187876670601	0.362945412074842	0.198899737569457	0.587343866831168
Merged-chr4-35132275-2	chr4	35131775	35132775	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	-19780.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	2.35242970890425	2.64159961647156	2.57008276637127	2.29926299793798	2.40248804715033	2.38838512480497	-1.01659323739307	0.227078663821368	1
Merged-chr2-66143465-4	chr2	66142981	66143981	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18688.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	5.48531855265123	5.29700494585562	5.38136911580351	5.36103649811965	5.09840208972639	5.50185753397507	-0.142394581239062	0.688207646521744	0.917193226920892
Merged-chr9-37208224-4	chr9	37207731	37208731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025464)	promoter-TSS (NM_025464)	8.0	NM_025464	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	6.2753690317829	5.98170985820156	6.1333372474385	5.77008527666398	6.01712703435855	6.04208746995355	-0.322710079464277	0.286601509244972	0.6838474208565
Merged-chr5-3501880-4	chr5	3501374	3502374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41959.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	8.729290940153	8.98941811544188	8.32258531287911	8.51270884662582	9.09870642365177	8.48074505209407	0.030685636464724	0.914142013649962	0.980894573251353
Merged-chr12-91587597-4	chr12	91587125	91588125	+	827.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2024.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	6.38656436079662	6.10815419057526	6.33567031453045	6.56200165566522	6.41396081476289	6.37629220027923	0.287828916778484	0.301953744109164	0.698647347565553
Merged-chr5-113608961-2	chr5	113608461	113609461	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	34642.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	2.40717979064749	2.29790886658623	2.48401255409167	2.0826487504674	2.12179719912258	2.61785177024846	-0.638384159733467	0.503555304460973	1
Merged-chr19-41987192-4	chr19	41986706	41987706	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	5443.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.23632401431154	4.31365156312016	4.23380092747886	4.431913030378	4.22525392126475	4.43355959493626	0.258157928904024	0.567779837185843	0.868309005726251
Merged-chr9-41168775-3	chr9	41168267	41169267	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10705.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.25433569883825	3.28191841451773	3.6890148011236	3.226383049784	3.07957603154	3.30021695516894	-0.865563248353624	0.181165415449918	0.563466223928412
Merged-chr9-72985482-4	chr9	72984993	72985993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114328)	promoter-TSS (NM_001114328)	-11.0	NM_001286545	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	5.61360433604587	5.98085223628448	5.62631234558073	5.65615654943105	5.38657405306365	5.71550120005332	-0.322704746723047	0.342400046122964	0.731306390936577
Merged-chr17-5571371-2	chr17	5570871	5571871	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	78771.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.1957340442157	8.10182936355469	7.96939947267674	7.99773097756419	8.20408997128228	7.97171282247787	-0.0409774310797983	0.851979819536303	0.96531854415899
Merged-chr13-67081441-4	chr13	67080935	67081935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	110.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	6.35076002549332	6.89731048041757	6.76581008889272	6.77200759618461	6.79340368805262	6.73197008121156	0.118113086498845	0.676390692081632	0.912525597578286
Merged-chr5-90902728-1	chr5	90902228	90903228	+	602.0	f1_balb.idr	Intergenic	Intergenic	-1171.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	5.46913252517045	5.00285577514077	4.8499427250045	5.35711824124897	4.63351714926381	4.79410023968321	-0.359313523714138	0.432274309230372	0.797270167804312
Merged-chr15-41603498-4	chr15	41602986	41603986	+	967.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	154383.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.65108085229707	2.5741316083343	2.60963728602621	2.4874967694004	2.32599882756553	2.28501439156379	-1.54490841164879	0.070078842683987	1
Merged-chr19-5488431-4	chr19	5487941	5488941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-62.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	6.421468865678	6.62644988949474	6.63777840139573	6.80039415458679	7.25123971608542	7.0459466750728	0.75884045082347	0.00525318828562363	0.0633459231033311
Merged-chr4-148039691-2	chr4	148039191	148040191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011929)	promoter-TSS (NM_011929)	614.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	5.62133181679399	5.92867535267422	5.8990699421859	6.22532492623923	6.38258527563076	6.03211025276053	0.707111994419956	0.0216677778076474	0.170328999132614
Merged-chr5-112292115-1	chr5	112291615	112292615	+	570.0	f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	15424.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	3.29054465724652	3.2625984491967	3.68934264077899	3.26376768423033	3.02222655145889	3.61524950364202	-0.403457045250335	0.551138291357795	0.860993840889537
Merged-chr8-11464365-4	chr8	11463843	11464843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-13586.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.19683723471579	8.35089452265268	7.76552977595617	8.12239765458839	8.34235205073318	7.67994082562393	-0.0686685666194941	0.8073431235322	0.954557080558103
Merged-chr5-143470556-1	chr5	143470056	143471056	+	557.0	f0_balb.idr	intron (NM_144915, intron 2 of 14)	Lx8|LINE|L1	6063.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.15368086477253	6.21014824420048	6.22189697414467	6.17157006578523	6.14485941759374	6.24151786773627	-0.0190836216280084	0.944974784339045	0.987875414328125
Merged-chr13-113617757-3	chr13	113617283	113618283	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	781.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.56843761914222	8.62508457178527	8.78827138531743	8.44561752640113	8.54874160301233	8.64874436225295	-0.156060569463998	0.449988204005803	0.80809209683043
Merged-chr13-67332516-4	chr13	67332029	67333029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177622)	promoter-TSS (NM_177622)	31.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	6.54025361178963	6.7624313937485	6.69081464383084	6.52657560583591	6.93437761083342	6.88388828695897	0.201658561181259	0.461078797451141	0.814864376583716
Merged-chr16-57534557-4	chr16	57534040	57535040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-14702.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.63344173749347	5.47021769265873	5.42035398756023	5.18129840649391	5.23892619084246	5.62208349883685	-0.321135622078135	0.363306275975547	0.748971523001173
Merged-chr12-84195925-2	chr12	84195425	84196425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1910.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.47086490693684	4.25056544239182	4.15160558920716	4.4179028823853	4.34987600512945	4.3619757530789	0.186471936055011	0.682011596718374	0.914930546030715
Merged-chr5-137314132-5	chr5	137313579	137314579	+	811.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031406)	TTS (NM_031406)	162.0	NM_011639	22051.0	Mm.27063	NM_011639	ENSMUSG00000023348	Trip6	-	thyroid hormone receptor interactor 6	protein-coding	5.60788891434393	5.67121997881419	5.0393175750824	4.85648222283096	4.85173322064185	4.87098722942442	-1.28623874125756	0.00102932446602609	0.0184349755511835
Merged-chr9-32518016-2	chr9	32517516	32518516	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	23436.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.39381187744753	5.47424336874952	5.73249852040433	5.54391510171851	5.50837247737156	6.03828967111123	0.324669921449396	0.361500852807509	0.747413912465046
Merged-chr17-87405745-4	chr17	87405203	87406203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22038.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	5.82976523106927	6.04851007464697	6.04257104026409	5.52957027377654	5.6577573345169	5.39518037112124	-0.782465073498537	0.014800194726254	0.131429520040784
Merged-chr2-157131208-4	chr2	157130703	157131703	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	4019.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	6.40643172799483	6.53251034415627	6.55669080564524	6.75994670727382	6.77772963900258	6.77673490245772	0.434955837112718	0.087304919774065	0.391784476569971
Merged-chr9-62374967-4	chr9	62374468	62375468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 5 of 6)	intron (NM_009672, intron 5 of 6)	33625.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	5.61495652214931	5.67398930087381	5.66670451067109	5.47359681169397	5.57906031655871	5.50652844802437	-0.239448143731509	0.451069542132132	0.808892122020053
Merged-chr4-132274332-4	chr4	132273840	132274840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025579)	promoter-TSS (NM_025579)	-35.0	NM_025579	66464.0	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	7.26444470689119	7.36689934843889	7.43242411295905	7.15203377085196	7.3785420562997	7.34154381699368	-0.0856115066444174	0.715599049247411	0.926402055104375
Merged-chr18-12221827-1	chr18	12221327	12222327	+	934.0	f1_balb.idr	exon (NM_008720, exon 3 of 25)	exon (NM_008720, exon 3 of 25)	14559.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	3.2279858124635	3.58328903751817	3.74475808060104	3.3200272750578	3.56273344576333	3.90483645322778	0.278582003301782	0.663735426381959	0.907297356021587
Merged-chr4-138007173-4	chr4	138006726	138007726	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	B2_Mm2|SINE|B2	9401.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.12988886869729	4.8679290906639	4.96304514243963	4.66338681557771	4.785199764134	4.95726285564413	-0.424880312345496	0.279439620829765	0.67713937823994
Merged-chr9-120115717-2	chr9	120115231	120116231	+	893.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5332.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	4.7127104232885	4.14072108898872	4.28988699980305	4.84605429647324	4.79763077436044	4.96765186484366	1.08237791821947	0.0186971585623854	0.154678183501587
Merged-chr2-5768290-5	chr2	5767714	5768714	+	685.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53452.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.5750679940131	5.46947924270053	5.62346607722354	5.53862045213733	5.44453176510001	5.96990265141296	0.192866304619624	0.576907462850023	0.87187513064165
Merged-chr13-20494235-4	chr13	20493741	20494741	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21251.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.88540012831701	3.99918379466404	4.12576255861287	4.00355813812401	3.88426605721873	4.23645685399187	0.112220190072808	0.823743244562677	0.958451755471188
Merged-chr5-114639542-4	chr5	114639056	114640056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 3 of 15)	intron (NM_022017, intron 3 of 15)	18865.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.32107852689599	3.06201301753172	3.07401991416456	3.02564800719295	2.86912314650217	2.89853046174303	-1.05861518865349	0.125222577358944	0.47354314333656
Merged-chr2-130728238-4	chr2	130727717	130728717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-30698.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	6.93129517406066	6.70921936590697	6.4732575308935	5.91350266403321	5.80192276417905	5.74206170621054	-1.5046408802676	3.78923835631152e-07	2.30930322320608e-05
Merged-chr2-76646775-2	chr2	76646275	76647275	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011871, intron 2 of 7)	intron (NM_011871, intron 2 of 7)	1219.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	2.50517514065717	2.6958616719105	2.65465183847075	2.43456438901965	2.48238565741705	2.47458184341281	-0.935069736226484	0.239808808294105	1
Merged-chr4-135962950-1	chr4	135962450	135963450	+	567.0	f1_c57bl6.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-775.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	5.81401676219689	5.96240337641159	6.18141977479047	6.14139405221587	6.17504679080317	6.05008633667791	0.245892921673451	0.408304467066248	0.781982251625038
Merged-chr18-69544047-4	chr18	69543550	69544550	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	197890.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.8191815418308	3.98149481374233	3.55791835097732	3.62305744805711	3.61830302744254	3.79268464628054	-0.432734992512871	0.438828143228876	0.80080572256114
Merged-chr10-95509623-5	chr10	95509130	95510130	+	760.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-5532.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	6.97592426649834	6.94488348152576	7.20902139986692	7.12856877286811	7.52930299751108	7.44995346186411	0.510379797060222	0.0462225050922847	0.271980920989946
Merged-chr3-88454121-2	chr3	88453621	88454621	+	698.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013658, intron 2 of 14)	intron (NM_013658, intron 2 of 14)	1640.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	2.70539148708378	2.66754750621594	2.91402635042935	2.72779929835064	2.84789530971254	3.20586287103787	0.863979413124666	0.248025808485695	0.645132606072547
Merged-chr7-132932207-4	chr7	132931721	132932721	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207302, intron 1 of 9)	intron (NM_207302, intron 1 of 9)	1079.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	7.15139354295835	7.50305801074872	6.99486761437268	7.23920012983571	7.47134469740379	7.38557973791059	0.187643292733111	0.474546800667545	0.821557327262028
Merged-chr4-145257515-4	chr4	145257015	145258015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-10645.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.27080843921417	6.26499606646725	6.1488653168123	6.10643984453463	5.92439190659304	6.27039043922346	-0.232123268120135	0.424164076990089	0.792514584770991
Merged-chr11-100721405-4	chr11	100720881	100721881	+	869.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7531.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	5.19561741726737	5.05839130922211	5.38363658992866	5.26831922070902	5.06168692030756	5.52835637848684	0.154777990073381	0.678936819130538	0.913553914280182
Merged-chr2-90579684-4	chr2	90579192	90580192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	CpG	955.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	8.45262269384418	8.65838232954595	8.53681908638701	8.413436376926	8.68324623216459	8.64753013074456	0.048114609367629	0.820762170209695	0.957826379136454
Merged-chr8-106198971-3	chr8	106198473	106199473	+	848.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357382)	TTS (NM_001357382)	11960.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	2.66437306711817	2.79306665087306	2.46143081001908	2.65973660016519	2.79974207969562	2.79829748512962	0.545192048082537	0.492358830702441	1
Merged-chr11-106154169-2	chr11	106153669	106154669	+	967.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011947, exon 16 of 16)	exon (NM_011947, exon 16 of 16)	5758.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.65140176754616	5.39033253624294	5.65593816464652	5.63411248868908	5.61817043393391	5.74349267508392	0.178209997892963	0.582734901115078	0.873826743013405
Merged-chr19-5835973-2	chr19	5835473	5836473	+	627.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	9505.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	3.02382503365499	2.91625111898825	3.1464564623202	3.11034156924807	2.91320465815149	2.86035880101703	-0.284285009319794	0.680451053865713	0.914241422413341
Merged-chr2-35108941-1	chr2	35108441	35109441	+	810.0	f0_balb.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	-551.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	6.91316646477332	6.77805067529563	6.93803172694011	6.87174583956789	7.23788262167494	6.94029019636817	0.245173133024454	0.344399236556525	0.733040996480069
Merged-chr11-79294006-2	chr11	79293506	79294506	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39311.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.76047083366131	4.67875143725557	4.51262392271641	4.51468613611114	4.6793572537064	5.32694104490174	0.501123733225285	0.282436968840842	0.680419679299017
Merged-chr12-103347165-1	chr12	103346665	103347665	+	943.0	f0_c57.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8836.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	6.92825762122442	6.73223308066682	6.35582207647309	6.86263491143747	6.87474395065641	6.43677489695481	0.070561457964752	0.814894087542165	0.956370078970016
Merged-chr1-74390110-3	chr1	74389591	74390591	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1518.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	4.32357813631466	4.04289801168745	4.23973315064227	4.16792562060519	3.95031060282688	4.02682913782663	-0.450710839899828	0.354970628974584	0.741985300392852
Merged-chr5-150891680-4	chr5	150891130	150892130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60977.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	3.68625971333369	3.4914939447485	3.80501067910097	3.7078162452168	3.49093630788291	3.67378308170081	-0.131600832186717	0.815371064768849	0.956370078970016
Merged-chr3-27182870-4	chr3	27182347	27183347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178772)	promoter-TSS (NM_178772)	-157.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	7.19089627103137	7.27370582936575	7.19108011255616	7.11600342167419	7.19280322785088	6.77259282880244	-0.254057022460496	0.31634546184414	0.710419766520761
Merged-chr14-25476045-2	chr14	25475545	25476545	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	16860.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.98797618471151	3.69373671715789	3.53946233765211	3.57581713239429	3.3142765253535	3.24552224749542	-1.33482601606829	0.032617477932014	0.219831127795806
Merged-chr10-80101225-4	chr10	80100725	80101725	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-38.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	5.24244052191541	5.41594140974147	5.90513490874698	6.23837809899516	6.29394656530646	6.1416383831985	1.23295432588448	0.000263674654934022	0.00628108808695967
Merged-chr2-32138041-4	chr2	32137535	32138535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13113.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	7.44474075650402	7.78500554754873	7.29799174965791	7.504524667117	7.80903668018617	7.49736754826608	0.123450786270403	0.635692653893284	0.89674856904556
Merged-chr8-120135911-1	chr8	120135411	120136411	+	557.0	f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-9018.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	2.64041923184732	2.47652758492819	2.68628827449079	2.35924875335664	2.45887750325356	2.44916235738914	-1.09726310719776	0.177924811600851	1
Merged-chr14-20824762-4	chr14	20824256	20825256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-11906.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	7.24152429982935	7.09599217862119	6.64448631733445	7.43760275919991	7.56687185718081	7.08100076426251	0.531276173721632	0.0658677758651093	0.334925806293328
Merged-chr8-73242248-4	chr8	73241736	73242736	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	111304.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.28572666508603	3.46630987985825	3.62348620196358	3.39361519988587	3.62279519841961	3.79007479531713	0.532327419788406	0.372722806737932	0.756537953227832
Merged-chr4-8842976-4	chr4	8842474	8843474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1MA5A|LINE|L1	91650.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.67472392140772	7.7308912630551	7.31321954306924	7.71718297794275	8.01803555100922	7.59772986469297	0.29367333163948	0.252271611404181	0.649735854202467
Merged-chr1-64190953-4	chr1	64190456	64191456	+	922.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69567.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.09899399720895	6.27357063198745	6.09603492789159	5.97417210325876	6.39094848492593	6.6178794906026	0.312362594292085	0.319676433891984	0.713586133471515
Merged-chr6-90703728-2	chr6	90703228	90704228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	12801.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	3.24796748177338	3.36406929974544	3.52697400591152	3.24253590369245	2.86845899605972	3.03625693124375	-1.40125633217083	0.041250836552895	0.253613093534305
Merged-chr7-19507440-7	chr7	19506923	19507923	+	840.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177692, exon 2 of 2)	exon (NM_177692, exon 2 of 2)	908.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	6.31866366141016	6.60316262718782	6.49009156823713	6.46429044480229	6.86568258958861	6.60170490226382	0.297610481662093	0.292699940241667	0.689884050296819
Merged-chr2-24970535-2	chr2	24970035	24971035	+	736.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355561, intron 7 of 7)	intron (NM_001355561, intron 7 of 7)	4563.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	3.19877446292532	3.05725601270266	3.42617019734491	3.15041431131153	2.94198753405313	3.1135240288133	-0.702152597498807	0.29317203840591	0.690196017357506
Merged-chr9-55512263-4	chr9	55511765	55512765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145615)	promoter-TSS (NM_145615)	-22.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	7.9150241773412	8.20961895230325	7.49595543467065	7.75371946785537	7.74845283425862	7.03367403303051	-0.50258838822768	0.108834524338952	0.440762343093329
Merged-chr1-88510024-4	chr1	88509519	88510519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008132)	promoter-TSS (NM_008132)	47.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	5.5896995919814	6.05525997981465	5.3918661003684	5.97013165516086	6.27576906553618	5.96712025099348	0.631581210503012	0.0749907314844495	0.360537862446297
Merged-chr18-62045690-4	chr18	62045212	62046212	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	92637.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	6.94793023131427	6.80106064392406	6.67171961968196	6.99155119991671	7.37448423720292	7.31135096359926	0.638476533281158	0.0148066233223987	0.131458548165829
Merged-chr7-99483033-2	chr7	99482533	99483533	+	616.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002172)	promoter-TSS (NR_002172)	-101.0	NR_002172	449630.0	Mm.454449	NR_002172	ENSMUSG00000065822	Snord15a	EG449630|Gm5774|RNU15A|Rnu15-a|U15A	small nucleolar RNA, C/D box 15A	snoRNA	7.36155632404395	7.96745310945767	7.25959956173512	7.47596453338977	7.54754282394767	7.3050928304295	-0.188214265855274	0.51082945538605	0.84113866701804
Merged-chr5-136962758-4	chr5	136962267	136963267	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025562, intron 1 of 4)	intron (NM_025562, intron 1 of 4)	690.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	6.04689861232937	5.97746020614997	6.34380967079904	6.35086687156623	6.2996848591309	6.22851913552118	0.295550888034452	0.307340702376981	0.703468906648251
Merged-chr13-36547480-4	chr13	36546979	36547979	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	186998.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	4.06193423386572	4.24716685266935	4.38196890744096	4.51383634060405	4.65762667750348	4.53340465172087	0.891825989849271	0.0459305417087056	0.270856733841104
Merged-chr11-80076191-2	chr11	80075691	80076691	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	B1_Mur4|SINE|Alu	4800.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	6.02740558564689	6.16739098396897	6.10320804400083	6.17130804600025	6.15196083858385	6.32574944065247	0.188444934416447	0.505099179714578	0.837951442413483
Merged-chr13-95679308-3	chr13	95678755	95679755	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-17665.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	5.09295542764261	4.64878085456448	4.83604592497106	3.7877098194936	3.67841308034616	3.99670373978015	-3.06485916429631	6.8058027745638e-09	6.43519587802165e-07
Merged-chr1-172473096-3	chr1	172472589	172473589	+	658.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2271.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.63588798101808	4.62428802077429	4.86551843093818	4.83771097435785	5.28224969228966	5.23003044088617	0.944253608395668	0.0187307015796556	0.154863296605721
Merged-chr7-16043005-4	chr7	16042468	16043468	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28877.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.86645604393204	7.24805390187901	7.19844570079	6.71971443601282	7.08466195406019	6.78618710816005	-0.353353755929134	0.198537508699651	0.58685067390707
Merged-chr17-10702464-2	chr17	10701964	10702964	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	GA-rich|Low_complexity|Low_complexity	137727.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	5.94356797331377	6.19945101478833	5.86130327596685	4.62025180803217	4.73267946493786	4.74165678127166	-2.66218109940581	1.19662844256315e-12	2.26808791455113e-10
Merged-chr13-91697163-4	chr13	91696597	91697597	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-44424.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.38457145857114	4.02386853920648	4.155841290599	4.10826827631464	3.88924882316825	4.22397042768113	-0.359337652626296	0.47146594882915	0.820002480512028
Merged-chr11-97996596-2	chr11	97996096	97997096	+	563.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152188)	promoter-TSS (NR_152188)	-423.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	5.24141329957637	5.21576900207027	5.14927702827457	5.43252319940576	5.58841461427809	5.43904971573934	0.567163062611271	0.0942403421650828	0.408967893547106
Merged-chr12-76540335-4	chr12	76539834	76540834	+	975.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6774.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	4.34212880799511	4.21810989698011	4.19275916457604	4.14349260433778	4.04361352382298	4.16789077845636	-0.39548609415376	0.396627556661113	0.773701467493871
Merged-chr3-107096513-2	chr3	107096031	107097031	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5036.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	3.85201070567779	4.01820018785657	4.28998569932135	4.30435145371865	4.35808853046634	4.35705690483079	0.793966592043394	0.0996733224780635	0.421072230534254
Merged-chr13-44272890-3	chr13	44272389	44273389	+	929.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-56402.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	4.32268038751508	4.36474985601386	4.30166784503175	4.1019331143137	4.1707232061754	4.41148649589619	-0.284034434167516	0.536499980689953	0.854048027420118
Merged-chr17-81668632-2	chr17	81668118	81669118	+	591.5	f0_c57.idr|f1_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69769.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.58997533350699	5.37814763356162	5.38316339977374	5.73897575811671	5.44324135970782	5.64797838627265	0.289354654600986	0.389603402071891	0.769251728541836
Merged-chr8-45331037-4	chr8	45330523	45331523	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2173.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	4.78105572842346	4.27681171644209	4.52411321340027	4.9032272894808	4.74406790373497	4.90445672177577	0.706246312999944	0.104476517847974	0.431342765559898
Merged-chr3-95952028-2	chr3	95951528	95952528	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22771.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	7.64051875275027	7.66818385184013	7.60130340231382	7.31261209655016	7.4823730022844	7.38535390383463	-0.350900512339049	0.115916545607325	0.454575545616661
Merged-chr1-180946076-2	chr1	180945576	180946576	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	3558.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	4.94272916880234	4.90782683361571	5.26943659871729	5.18866806658748	5.08348758993922	5.17718948307771	0.232194459727368	0.533641040943989	0.852530599317783
Merged-chr14-70060539-4	chr14	70060050	70061050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028560)	TTS (NM_028560)	-16895.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.06216218313516	6.71637841252951	6.5996382153386	7.30778587608733	7.61917421273892	7.07969323352766	0.826343605381421	0.00392952889827357	0.0512419637275865
Merged-chr5-112325423-4	chr5	112324913	112325913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	8.65986447911387	8.69834025439278	8.17401558137421	8.45836957854224	8.6863794456347	7.94596583170978	-0.179156551014139	0.525544530140108	0.849027787811941
Merged-chr7-107566012-3	chr7	107565505	107566505	+	630.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1428.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	4.29321977229195	4.21117827775789	4.36324597014435	4.38438102649178	4.50049548837566	4.47289076215269	0.440540787273815	0.316083273488691	0.71019515082351
Merged-chr11-106973203-4	chr11	106972703	106973703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26322.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.01408187083855	5.82777177721165	5.67751774062153	6.42804304369218	6.47544720360701	6.33140860369155	0.946648647712818	0.00128106819312133	0.0218432627486147
Merged-chr10-78458899-2	chr10	78458399	78459399	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6049.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	4.22131202404307	4.186491853964	3.9582608460448	3.79525374776554	3.58595447738764	4.16832791729195	-0.815127698236509	0.136220829691037	0.493146752362964
Merged-chr17-87286286-4	chr17	87285787	87286787	+	888.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	3401.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.02228298928314	3.29808943651376	3.15612848096774	3.09221654854254	2.94581712747631	2.92465176787281	-0.788682389977693	0.24519360147537	0.642381314494918
Merged-chr14-120912320-2	chr14	120911820	120912820	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023579, intron 1 of 25)	intron (NM_023579, intron 1 of 25)	1126.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	4.92276090539877	5.15974453411276	4.69259751394786	4.83666218003544	5.15929350998848	4.95652744126696	0.102641640362929	0.800485069732346	0.952559374210415
Merged-chr4-129626732-1	chr4	129626232	129627232	+	1000.0	f1_balb.idr	3' UTR (NM_001199695, exon 11 of 11)	3' UTR (NM_001199695, exon 11 of 11)	-2824.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	3.08007146016936	3.11759728054583	3.0415426063208	3.2362684144877	2.943819379711	3.49990093221319	0.666699704576334	0.329558435353072	0.721399184090983
Merged-chr2-132111520-4	chr2	132111015	132112015	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33593.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.85360527736522	6.78482890561149	6.58262256519208	6.88639494083005	7.25383293019892	6.3683023836889	0.235590837713574	0.460846869013691	0.814802506471053
Merged-chr13-34738721-4	chr13	34738191	34739191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138746)	promoter-TSS (NM_138746)	-951.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.76965029678844	4.66891375421171	4.32896380205458	4.45046752957474	4.3298164257442	4.61591277671067	-0.372146407997804	0.405222487197896	0.780049815379569
Merged-chr2-26559098-1	chr2	26558598	26559598	+	550.0	f0_balb.idr	Intergenic	Intergenic	-21958.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	3.58609490759603	3.44948471538227	3.36192387416026	3.34311791296731	3.23484972684806	3.43324170727935	-0.545620023897835	0.364381460995361	0.749773790733149
Merged-chr3-152261502-4	chr3	152261014	152262014	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	4281.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	4.60569744973204	4.49267160640078	4.11318473216465	4.13659943852405	4.23820791079627	4.08087317127973	-0.725420450410802	0.133596788751147	0.488819290786001
Merged-chr10-78150061-2	chr10	78149561	78150561	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	19707.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.05875857746079	4.5070975316025	4.44160104873096	4.21710077950973	4.33045899381231	4.24720855893118	-0.214544891342187	0.652041448944369	0.902896807825606
Merged-chr11-113683452-3	chr11	113682952	113683952	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361593)	promoter-TSS (NM_001361593)	699.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	6.65517439095172	7.09397471911789	6.97721285474419	6.63352215849338	6.64791853652891	6.81186499242182	-0.352101719920177	0.193747366861349	0.581033530782477
Merged-chr7-119881402-2	chr7	119880902	119881902	+	771.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14056.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	4.58962442193716	4.75755563534494	4.63214620776472	5.0432059107997	5.04405744905027	5.10761646371482	0.888358107876511	0.0215508502233441	0.169730539080361
Merged-chr4-132628931-2	chr4	132628431	132629431	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10115.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.58454265042946	3.42274939371168	3.38490328166497	3.48106561332748	3.37072212217594	3.34067324781731	-0.266972050528965	0.651936337916947	0.902896807825606
Merged-chr7-67370412-4	chr7	67369928	67370928	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	2430.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.64252951607883	5.77799889634478	5.54803838449784	5.82122029128841	5.73433954732996	5.52190860830799	0.0722685000344282	0.822672870865896	0.958135961464233
Merged-chr11-23754475-4	chr11	23753975	23754975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	16495.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	5.3116286266252	5.30631759679786	5.10716748097983	5.38436821521161	5.56631309449298	5.73358527492281	0.602789650053272	0.0826633510498678	0.380371183661859
Merged-chr5-105409293-4	chr5	105408785	105409785	+	919.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6490.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	3.40679317449857	3.70652704326401	3.44323388806108	3.28031450963308	3.201396601248	3.56761226628071	-0.678525883666942	0.274232301144833	0.671699134465491
Merged-chr16-22116274-4	chr16	22115772	22116772	+	955.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	RMER1C|Other|Other	47027.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	3.73807366833691	3.23493842042862	3.43592918986526	3.66064185100432	3.51149753756723	3.87046464726381	0.672635226459703	0.276719157912341	0.674041208769616
Merged-chr2-38497761-4	chr2	38497255	38498255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13942.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	3.68691229742322	3.80271414699556	3.98435415088963	3.97885517632344	3.81954575918755	4.05236097265	0.388922184031468	0.454898361007712	0.810663309750856
Merged-chr18-82868806-2	chr18	82868306	82869306	+	615.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12909.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.29576224295007	4.17105737370869	4.29457393545732	4.05918423576689	4.3851554762359	4.4044009049469	0.107587621827643	0.818097544836772	0.956842917576288
Merged-chr2-133444934-4	chr2	133444430	133445430	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107229.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.54865021157132	3.76986032909701	3.45143689672069	3.19520848568605	3.18141116706696	3.52283114364985	-1.15722895560509	0.0644653697208058	0.331003029223816
Merged-chr2-167333694-3	chr2	167333227	167334227	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	15451.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.20731724884495	5.31614848018426	5.47537812459054	5.64794374265965	5.56789439953663	4.99928377866665	0.227020742896381	0.550098338225484	0.86061104953497
Merged-chr12-72408620-3	chr12	72408131	72409131	+	893.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153457, exon 1 of 9)	5' UTR (NM_153457, exon 1 of 9)	423.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	1.89345812233704	1.91362734714218	1.95556661729317	2.15712502937125	2.04495584852408	2.29885898276938	2.04346989598701	0.0376557280506239	1
Merged-chr3-88716864-4	chr3	88716346	88717346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009069)	promoter-TSS (NM_009069)	-8.0	NM_001163310	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	6.11496496757476	6.18545476077926	6.21938548697407	6.31805766866353	6.09554318574964	6.17592365549564	0.0437253924713995	0.876814780711307	0.971407825796496
Merged-chr11-73047792-4	chr11	73047293	73048293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025818)	promoter-TSS (NM_025818)	-74.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	6.65328463908802	7.06116215525257	6.55535059565375	6.78138148396131	6.75804702285265	6.50442552077095	-0.144273829190019	0.615683204204564	0.888073730124794
Merged-chr8-61575321-4	chr8	61574847	61575847	+	758.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15822.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.4773763505617	4.4738576079011	4.511379461402	4.34742684538784	4.36163464794857	4.2719375262828	-0.400625819738886	0.356968855879549	0.743660865917135
Merged-chr2-31119222-4	chr2	31118738	31119738	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	-22738.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.07045113816504	4.97683123040919	4.85053635140805	4.68862100322775	4.78150394652124	4.95255695230406	-0.376214490590876	0.33314065098467	0.724049727426025
Merged-chr2-27314523-2	chr2	27314023	27315023	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-67220.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.34842666682321	3.053507914268	3.57566366204164	3.24564728892769	3.02787654835187	3.39076265455849	-0.45368547555691	0.499507492926153	0.834526991118793
Merged-chr10-8725130-2	chr10	8724635	8725635	+	720.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175155, exon 20 of 20)	3' UTR (NM_175155, exon 20 of 20)	160935.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.25640051766933	2.22764115184835	2.64206128203366	2.39763464727458	2.22732181806225	2.53568508381544	0.0326018830189719	0.970242336591659	1
Merged-chr17-27957149-2	chr17	27956660	27957660	+	560.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	47854.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.36050178302865	4.35627711326824	4.40090473064087	3.96071582664456	3.77744481539249	4.21064529244033	-1.11468469766007	0.0234475771060069	0.179400181301373
Merged-chr16-91382574-4	chr16	91382096	91383096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	MTEa-int|LTR|ERVL-MaLR	9813.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.85832092678748	7.66063437609481	7.5729306154506	7.82504127214029	7.84767372924591	7.33721270114746	-0.00913189665414935	0.971595185004067	0.99377981119604
Merged-chr9-77688962-4	chr9	77688463	77689463	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52231.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	4.45552312349934	4.44635873495543	4.21100979202378	4.20383962318845	4.1712341261593	4.18419721275194	-0.532168261246932	0.245150933920428	0.642381314494918
Merged-chr18-39639005-4	chr18	39638488	39639488	+	933.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-134509.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.77397766598855	3.28309705266926	3.64311314783973	3.63579563948147	3.84334107022683	4.00568653174185	0.831097775399656	0.163845411287863	0.537798828885102
Merged-chr7-49006116-2	chr7	49005616	49006616	+	875.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	47043.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	2.67627067724636	2.63209759155911	2.73110785945069	2.73682833487251	2.52634958228096	2.48196837848126	-0.511756430743609	0.509873006610716	1
Merged-chr4-83486579-4	chr4	83486096	83487096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290527)	promoter-TSS (NM_001290527)	-133.0	NM_001347143	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	7.02444525842	6.91488551577882	6.60944209129766	6.92861108486515	6.36827221181913	7.02570898720149	-0.108847876185038	0.723167636904386	0.929000340406704
Merged-chr6-89420879-2	chr6	89420379	89421379	+	598.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-58266.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.24625813992013	3.134059840325	3.09291082007034	3.05627673270245	2.96464507890958	3.33385953197776	-0.180697930761308	0.785757762647153	0.948164689606319
Merged-chr13-44292613-5	chr13	44292113	44293113	+	795.133362	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76126.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	5.92490014115639	5.96868193085032	5.52266129730779	5.95370569568554	5.69808583092974	5.39228152524939	-0.217925298650915	0.536112488053503	0.853881313972766
Merged-chr9-101099725-2	chr9	101099225	101100225	+	769.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	24963.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	4.11036043973225	4.01137174165297	4.1787152607911	4.60480920300554	4.52818309018314	4.38591247291534	1.11712698102183	0.0138667660411548	0.125949772814366
Merged-chr1-36264404-4	chr1	36263922	36264922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153408)	TTS (NM_153408)	9003.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	6.37659697107527	6.28165651780859	6.36987795212699	6.30706138380937	6.44344705426785	6.62005292917699	0.189080795977033	0.490039387744691	0.829980359087456
Merged-chr1-152525703-2	chr1	152525203	152526203	+	715.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	99514.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.32135718372541	5.01356740303743	5.41064540092505	5.26757001269101	5.21194893447027	5.26290381884248	-0.0100585527247214	0.977776410609627	0.994934997786627
Merged-chr17-31297814-4	chr17	31297295	31298295	+	826.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242427, intron 1 of 19)	intron (NM_001242427, intron 1 of 19)	1571.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	4.35974995688202	4.37879701054541	3.89419407658337	4.46095140434815	4.37410546004796	4.181628828766	0.283453004690071	0.570200382129076	0.869072933274727
Merged-chr16-76314202-2	chr16	76313702	76314702	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	58847.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.75129768281965	2.39894469603803	2.83644296637984	2.6473938198669	2.67246758444145	2.79063542387368	0.158828843159957	0.842537262822601	0.963071689492856
Merged-chr6-117882263-6	chr6	117881701	117882701	+	844.89447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-18139.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	6.17140754398034	6.30399674573939	6.41719463965894	6.24795261791481	6.56441013319107	6.57979228806328	0.290169974299673	0.306308176587463	0.702496920081851
Merged-chr10-99461280-3	chr10	99460792	99461792	+	972.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147879.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	7.50038123772231	7.68074012489718	7.70017889141183	7.3395628437055	7.85573048399032	7.3835581651942	-0.101052146376827	0.698508593440383	0.920383812475161
Merged-chr1-45926660-3	chr1	45926127	45927127	+	808.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.0584716518997	5.26611780834452	5.29669975115253	5.08058343970954	4.8998320276318	4.96334881806482	-0.479943609020235	0.193114371193611	0.580267363879138
Merged-chr10-118588246-4	chr10	118587759	118588759	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31734.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.04136462788855	4.79842668776338	4.06076773271823	4.22096646686623	4.03983235090309	4.0222674258343	-1.55736374987331	0.00374824238131456	0.0495369091142398
Merged-chr19-24272363-2	chr19	24271863	24272863	+	635.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008044, exon 3 of 5)	exon (NM_008044, exon 3 of 5)	8223.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.21602839723228	3.35490760179777	3.52238538715862	3.29316589036746	3.30286857332012	3.32439404054713	-0.228881376671705	0.707826502311002	0.923567571533986
Merged-chr17-8147789-4	chr17	8147271	8148271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083938)	promoter-TSS (NM_001083938)	17.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	6.67061893332607	6.13163669141066	5.75610643955805	6.56932136856615	6.34230463846223	5.90464581454604	0.0885124028396128	0.814810099282834	0.956370078970016
Merged-chr2-150755253-4	chr2	150754754	150755754	+	612.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 2 of 13)	intron (NM_001355068, intron 2 of 13)	6173.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	4.08835884871881	4.08570422393642	4.44903265236168	4.1891725080496	4.5326077203745	4.5149932453582	0.569964284442599	0.231898737385257	0.628058136912166
Merged-chr15-103453704-4	chr15	103453198	103454198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153505)	promoter-TSS (NM_153505)	-127.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	6.13400619407243	6.04883608546011	6.37804516912634	6.17364718744635	6.24153331216007	6.00507981745361	-0.0553262017362614	0.85077517677775	0.964981271430729
Merged-chr16-13668139-4	chr16	13667660	13668660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028761)	promoter-TSS (NM_028761)	10.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	6.17967457890863	6.5510776207244	6.60934219022606	6.60597790821744	6.51949382944222	6.40524960425149	0.0984206413991039	0.73011070374759	0.930751044681856
Merged-chr10-44628858-2	chr10	44628358	44629358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-170110.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.41618881214736	4.39281571388294	4.70436137025048	4.51452125521557	4.58061438892222	4.90903446102002	0.407930654083201	0.351745026290316	0.739445697369056
Merged-chr17-84267916-4	chr17	84267399	84268399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	L1M3|LINE|L1	-79952.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.68141363869044	6.59418201913732	6.1221930539664	6.33380152927316	6.42328909748954	6.27185439618701	-0.248621680039298	0.403450683064344	0.778839626857015
Merged-chr6-52921514-4	chr6	52921021	52922021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11901.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	6.22408808031866	6.16603527633576	6.03825810431818	6.05541188137692	6.43291567238877	6.36916943424044	0.24842332582334	0.397171734565852	0.77406346769465
Merged-chr17-45623141-2	chr17	45622641	45623641	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21039.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	2.9198066503441	3.16023059752465	2.99288351489701	3.29052494451253	3.16387765806311	3.51537563566307	1.24811397060365	0.0646647106469743	0.331338516334322
Merged-chr8-124830199-3	chr8	124829695	124830695	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198632, exon 10 of 10)	3' UTR (NM_198632, exon 10 of 10)	32834.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	3.96463191491882	4.04619877582831	3.88303959803764	3.21006642802621	2.97684215586188	3.22663613261776	-3.75604655289675	6.25324644546392e-07	3.58163606037146e-05
Merged-chr13-3545114-4	chr13	3544603	3545603	+	843.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	7028.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	4.77157611465198	5.25549072700299	5.44867932872145	5.44861715296558	5.30350815656989	5.36731842545774	0.38574660663314	0.322420582790187	0.715889842636581
Merged-chr4-134092643-4	chr4	134092130	134093130	+	957.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001162970)	TTS (NM_001162970)	2443.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	3.46110153190874	3.15969914187395	3.32624187888472	3.77931149482362	3.66493193219812	3.67884223194164	1.42783061673396	0.0174482537117744	0.147469202117758
Merged-chr5-32112709-4	chr5	32112216	32113216	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23756.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.72046556890064	3.76817167395264	3.96275745278502	4.14420236826771	3.94197728320164	4.41815245412015	1.07194495479548	0.040281101417025	0.250003535914459
Merged-chr7-28434012-2	chr7	28433512	28434512	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	2179.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	4.6913848433994	4.78133749941142	4.93373601372816	4.47662136766194	4.8085128743954	5.03078021923115	-0.0331454067006808	0.937432402043066	0.986057836872162
Merged-chr2-143978644-4	chr2	143978164	143979164	+	985.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	32599.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	3.64001915093424	3.86142133279088	3.99884221566447	4.05498475227029	3.87088972520075	4.02030101183896	0.45031148533341	0.388067843000824	0.768049785462456
Merged-chr1-155082780-2	chr1	155082280	155083280	+	650.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151545, exon 1 of 7)	non-coding (NR_151545, exon 1 of 7)	484.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.04653820829409	4.63898059782307	4.70017480396031	4.85289700697237	4.38968116421504	4.21358318347736	-0.686396907310891	0.149067581604521	0.515274779276237
Merged-chr11-115574668-2	chr11	115574157	115575157	+	911.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002929, intron 7 of 18)	MTC|LTR|ERVL-MaLR	10213.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	2.60654120487861	2.83638998260674	2.95986003116725	3.24616736983619	3.1673319213243	3.03401996344746	1.70123550676634	0.0222067880608106	0.173029536563716
Merged-chr9-102616432-3	chr9	102615936	102616936	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081122, intron 5 of 16)	intron (NM_001081122, intron 5 of 16)	9688.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	3.28985924078878	3.52934883592205	3.38306980671679	3.63134945418107	3.80032005193967	3.87643815424973	1.2894087486655	0.0270552930577769	0.19589425902815
Merged-chr1-180848276-4	chr1	180847789	180848789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2862.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	8.60657880345184	8.74816957244719	8.21591294846792	8.50754761648994	8.71560462638748	8.12292342682119	-0.09638235263977	0.715052808761859	0.926256933314498
Merged-chr4-137863122-3	chr4	137862608	137863608	+	882.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	871.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.72760291450895	4.74432875875386	4.92349074827677	4.40253595850738	3.98103920909479	4.22748887423655	-1.50008608931156	0.00108556168803964	0.0192063399826499
Merged-chr13-52584117-2	chr13	52583617	52584617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	680.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.86471858465716	8.24976966170507	7.72682827211032	8.0126572436477	8.30120290946749	7.86874166316393	0.151942698282491	0.560432092649323	0.865236087802179
Merged-chr5-143315167-7	chr5	143314620	143315620	+	987.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172726, exon 1 of 6)	5' UTR (NM_172726, exon 1 of 6)	240.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	6.55916806611398	6.60287893018278	6.66989301465873	6.455798227921	6.102045370751	6.46111828809281	-0.435782461476023	0.118746864202465	0.460595239444282
Merged-chr4-132607714-2	chr4	132607225	132608225	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-31321.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	4.48831681590839	4.87974769979435	4.49069216048388	4.65382242514714	4.82204133424336	4.46861271406181	0.0573920888811193	0.896941861123752	0.97587199430405
Merged-chr7-19300717-4	chr7	19300165	19301165	+	946.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9380.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.46619854366186	5.9117539272922	5.39733289336739	5.57231251215939	5.70819477998826	5.29543007265094	-0.141440631187622	0.698986193230938	0.920515737149593
Merged-chr4-43479698-4	chr4	43479181	43480181	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4028.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	5.26747760503124	5.36389447003553	5.23133239253931	5.19866386020504	5.5592149841966	5.5909055484404	0.330258340290597	0.348061990723771	0.735982909356061
Merged-chr6-125001787-2	chr6	125001287	125002287	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145926, intron 5 of 5)	intron (NM_001145926, intron 5 of 5)	3177.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	5.97076328443737	5.61600624801302	6.12110227073187	5.87008688031107	6.10370387266391	5.84093903182965	0.0725656546158191	0.824072152932266	0.958461473318254
Merged-chr14-57398552-4	chr14	57398047	57399047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-64.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	6.8955839963859	7.19293523482482	7.06800571140425	6.818791613349	7.01627742392788	6.89480370994994	-0.217251766861385	0.390415850046993	0.76958978415218
Merged-chr18-84087734-3	chr18	84087221	84088221	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-437.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	7.3682688157042	7.26961707821482	7.51929239186299	7.67308800628773	7.27771909370681	7.50780451821433	0.159972901496724	0.517246563306379	0.844527100635531
Merged-chr11-94370244-2	chr11	94369744	94370744	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	22732.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.02033143219157	5.70006105616207	6.00447655298551	5.45099258671226	5.53076648162693	5.57082346899092	-0.722970567002859	0.0250709347841912	0.187323328717708
Merged-chr7-118491964-4	chr7	118491484	118492484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033380)	promoter-TSS (NM_001033380)	-9.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.91561713496803	8.10521629556187	7.99428839989962	7.78331452490554	7.89782043960679	7.95374989657556	-0.18485448687776	0.391843547055336	0.770775156449779
Merged-chr12-73685431-3	chr12	73684930	73685930	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100634.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.3987783179212	4.21364616367903	4.38513236233238	4.36465179158395	4.35311548658237	4.32057045852106	0.0403759178418818	0.927754832122675	0.983698457021454
Merged-chr1-92641950-4	chr1	92641454	92642454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028108)	promoter-TSS (NR_028108)	-6.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	7.4619128894028	7.54371617231185	7.39142825586289	7.50096491611625	7.49447145070861	7.08308085595052	-0.126663280165255	0.609227897783257	0.885062773702803
Merged-chr1-173753593-2	chr1	173753081	173754081	+	629.25	f0_balb.idr|f0_c57.idr	intron (NM_008329, intron 5 of 8)	intron (NM_008329, intron 5 of 8)	-11772.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	3.43746644368279	3.57380229093639	3.6901630237719	3.30978180352795	3.49053516579795	4.19601557284804	0.497853028821508	0.445369829528738	0.805110311477591
Merged-chr5-135009885-5	chr5	135009364	135010364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033794, exon 1 of 5)	non-coding (NR_033794, exon 1 of 5)	408.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	8.08482259301287	8.19265824231191	7.98354391818024	8.43279834388266	8.69486434778743	8.06231335258292	0.473965337267195	0.0571623795206985	0.308394428785468
Merged-chr2-154657612-1	chr2	154657112	154658112	+	656.0	f0_balb.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	586.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	9.39073709113862	9.62502776631149	9.04017196358212	9.27734811972429	9.61877781142005	9.28270968980493	0.0365919167765185	0.880312346259166	0.972493267651278
Merged-chr9-63985319-4	chr9	63984810	63985810	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	36749.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.09046620199142	3.84801933233757	3.78782904647776	3.9941085409201	3.56182787853639	3.6379537013828	-0.552058990951644	0.325028797274879	0.717930571240101
Merged-chr6-29208539-3	chr6	29208064	29209064	+	893.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 3 of 14)	intron (NM_001302934, intron 3 of 14)	3733.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	3.27364934724838	3.25186239491274	3.25359136362147	3.74193322435157	3.38268115171304	3.6074794626976	1.23006996994056	0.0435802978690915	0.262366077221601
Merged-chr8-70693391-1	chr8	70692891	70693891	+	855.3333130000001	f1_balb.idr	Intergenic	PB1D7|SINE|Alu	-4348.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	3.49401548603531	3.35344645139709	3.47781202260086	3.55364169268808	3.44695784342756	3.54853211110574	0.270645271767472	0.638116076818581	0.897380718500389
Merged-chr10-17949364-2	chr10	17948864	17949864	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	2.89195200910966	2.98252868219091	2.96030842144655	2.99893662774443	2.73708807339549	2.84943709746127	-0.397304476503377	0.572626067969643	0.869896838396072
Merged-chr10-121472619-1	chr10	121472119	121473119	+	668.0	f0_balb.idr	intron (NM_138956, intron 1 of 4)	ID_B1|SINE|B4	3631.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.65004617769453	5.91640610384318	5.79903656001133	5.31862806639436	5.38731826612455	5.30003956810577	-0.866964832351225	0.00850310360737105	0.0899473995629456
Merged-chr17-63865417-2	chr17	63864917	63865917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	1436.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.74770589671027	6.11150006909366	5.97795426552047	6.23854677419377	6.74115154552153	5.99117716349873	0.710102324971871	0.0377556231311951	0.240236284277776
Merged-chr1-9546305-6	chr1	9545796	9546796	+	967.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021511, exon 1 of 1)	exon (NM_021511, exon 1 of 1)	888.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	7.18570100944314	7.46304620202361	7.31060841874786	7.27497335966813	7.24910757201175	7.52294705901836	0.0328334266477586	0.892974778986953	0.975151522520163
Merged-chr5-65699361-2	chr5	65698818	65699818	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1462.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	6.32008466743603	6.62184635686496	6.64235142015438	6.51084267770551	6.59927679665321	6.66925974829909	0.0963762914632895	0.722817820985102	0.928959550235296
Merged-chr7-109958857-2	chr7	109958357	109959357	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1565.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	6.14008851840028	6.15718775309015	6.21769374707003	6.42190294850294	6.49062351117888	6.21516247867203	0.366850766555889	0.18693928960577	0.571785193703755
Merged-chr7-142060412-3	chr7	142059905	142060905	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347560, exon 1 of 5)	5' UTR (NM_001347560, exon 1 of 5)	448.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	6.30329669237155	6.03549711344368	6.23512110058557	6.29033180209066	5.71111252863507	5.94450455488481	-0.329276414485309	0.308857459338202	0.70476767553933
Merged-chr4-121018423-4	chr4	121017935	121018935	+	936.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1188.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	4.41427266568929	4.32293170247369	4.66432805932225	3.99556944331129	3.91391395501018	4.46735935061891	-0.895630379256084	0.0745122204572124	0.359191984230562
Merged-chr1-54826073-3	chr1	54825572	54826572	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	100315.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.06488176319702	3.3100522956203	3.29971551098047	2.93800013648359	2.64328952309958	3.03199823502642	-1.70504368813783	0.0230928564341263	0.17768036366997
Merged-chr1-66861940-3	chr1	66861431	66862431	+	697.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	intron (NM_007381, intron 1 of 10)	1378.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	5.46632222871244	5.48423261149313	5.01029512954566	5.69162322392345	5.54120082463633	4.99725010732925	0.202178040629919	0.616340188823092	0.888323384760338
Merged-chr1-59953062-4	chr1	59952563	59953563	+	738.545837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 3 of 7)	intron (NM_001037725, intron 3 of 7)	40057.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.58694936640588	3.34913745365249	3.32936423374854	3.51966182018854	3.41562305510717	3.40191405000475	0.0587156482707884	0.9215335634636	0.982542868764899
Merged-chr2-165853748-1	chr2	165853248	165854248	+	708.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	(CAGAGA)n|Simple_repeat|Simple_repeat	4425.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.60677495548855	4.42126950352357	4.86460384692567	4.61382442109869	4.41729176548924	4.4696621862896	-0.32087280447157	0.464434705621399	0.816412565447834
Merged-chr14-75032380-4	chr14	75031877	75032877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198642, exon 2 of 14)	exon (NM_198642, exon 2 of 14)	16350.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.01343658438133	4.75185922924546	4.80883298527081	5.00089372040268	5.18591826075181	4.91392471874791	0.394743768189972	0.309066160625803	0.704802606494279
Merged-chr1-171974094-2	chr1	171973595	171974595	+	714.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	53200.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	3.89584214329303	3.70788450757279	3.98909852431777	3.60390305110586	3.38274199341593	3.66820347319677	-1.08265398583486	0.0552582316079241	0.302176069159414
Merged-chr5-24118467-3	chr5	24117969	24118969	+	867.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161800, intron 1 of 9)	intron (NM_001161800, intron 1 of 9)	17879.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	1.83581281435513	1.82368778975604	1.99824248757787	2.29718421966407	2.20147447846198	2.41054461136599	4.76486712190644	0.000593004635961572	1
Merged-chr12-77833626-3	chr12	77833125	77834125	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-393030.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	3.00883894517343	3.03079171125508	3.61713481908021	3.00481817945121	3.10978320082532	3.44535445996318	-0.197104350424738	0.783212201156579	0.946983650118234
Merged-chr14-50924868-4	chr14	50924374	50925374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	19.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	8.81260354637012	9.17524202277473	8.6447743420647	8.86153071566594	9.22092943022705	8.49902801891482	0.000163700586434559	0.999522097886299	0.999920050950963
Merged-chr7-67463867-4	chr7	67463354	67464354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90996.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.40560558561636	7.50163855757233	7.69206844532578	7.51344054132819	7.67199260154352	7.37852006743775	0.000892667081024875	0.997011331994424	0.999305189450257
Merged-chr14-19416170-4	chr14	19415666	19416666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	186421.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	8.63493027184787	10.0894100098874	6.8998555030832	9.21872789071039	8.84957794915356	7.40861182455912	-0.586461433426276	0.642804981665104	0.899532469670737
Merged-chr1-149948575-1	chr1	149948075	149949075	+	708.0	f0_balb.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	12715.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.10315154850979	5.31325642692312	5.3700790282285	5.49115774982173	5.48299833781369	5.57542915082512	0.493592364787666	0.146018892721345	0.50962375846473
Merged-chr1-86525395-4	chr1	86524895	86525895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1162.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	8.72508352941489	9.19335247617316	8.47374540832402	8.62446382063962	9.12823271516407	8.61641791053347	-0.0287022546825167	0.918495258712512	0.981786052707347
Merged-chr12-102431710-4	chr12	102431206	102432206	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	L1Md_F2|LINE|L1	8107.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.08352655037857	6.09219702243907	6.05771725028137	6.18828806640352	6.09212502921148	6.11844054349954	0.0912099352462975	0.745657281072142	0.936251303305737
Merged-chr4-41628260-5	chr4	41627742	41628742	+	972.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 13 of 19)	(CA)n|Simple_repeat|Simple_repeat	12060.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	4.29027115695247	4.16494807110895	4.28840209262594	4.34353588259722	4.02692595462581	4.44010701686034	0.0656114006857721	0.890174375371032	0.97445934701389
Merged-chr16-30365693-2	chr16	30365201	30366201	+	729.0	f0_balb.idr|f0_c57.idr	intron (NM_001128096, intron 3 of 33)	(TG)n|Simple_repeat|Simple_repeat	22829.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.07054527522711	4.24279930097792	4.12045522384589	4.04230858154306	3.96071366758985	4.04585066373783	-0.392468752046805	0.414729408845378	0.786019635735451
Merged-chr10-42244721-4	chr10	42244218	42245218	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	32024.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.66742536737326	4.25135472372571	4.34141493747218	4.51673886527668	4.24347955070098	4.40962534200753	-0.11939462323943	0.796818056652068	0.951540680890061
Merged-chr1-165737652-4	chr1	165737172	165738172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26086.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	7.14293867514079	7.06306346865476	6.92410180262672	6.93347295406571	7.09279520119706	6.9680808286765	-0.073132315348626	0.764698957148916	0.942018580682649
Merged-chr11-79254201-4	chr11	79253658	79254658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	CpG	537.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	8.80771088005488	8.74512834875424	8.48450203583844	8.53535649213247	8.92796893631037	8.55019419400139	-0.000162083151868557	0.999445273154027	0.999920050950963
Merged-chr5-120887665-2	chr5	120887165	120888165	+	929.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011852)	promoter-TSS (NM_011852)	-52.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	5.12724516155039	4.89340297779931	5.22362688796977	5.39623620246079	5.57693326254516	5.18830357554465	0.662011880875423	0.0719701215356781	0.352284832798441
Merged-chr15-31564054-4	chr15	31563594	31564594	+	998.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4739.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	5.4244719738175	5.25076798218703	5.36670305209897	4.75566650525779	4.5683498614535	4.41619436773236	-1.65564768807691	3.58682027981683e-05	0.00119428628188475
Merged-chr3-31094577-4	chr3	31094071	31095071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-487.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.72038581110902	7.16010667618823	7.4027916354229	8.01263680746256	7.45414951868198	7.49175158888411	0.335285812989468	0.246449276896319	0.64352449105595
Merged-chr17-24165724-2	chr17	24165220	24166220	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1987.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	7.6901838680722	7.44936387324724	7.20962205247207	7.48622815505011	7.92376262459342	7.35188504417115	0.218265809018434	0.433999800177088	0.79814689082248
Merged-chr11-70790720-2	chr11	70790220	70791220	+	609.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001045526)	TTS (NM_001045526)	21841.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.21712395985673	6.0097133930441	6.04354984341742	6.03896284173816	6.44340159082751	6.29464119100553	0.3020992049227	0.311463279275515	0.706502339869604
Merged-chr1-91057126-2	chr1	91056626	91057626	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	IMPB_01|Satellite|Satellite	3682.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.27835644448931	7.14510222269652	6.89031282806874	7.04539254934712	7.27607780811864	7.11480956585392	0.0455406295932642	0.857988245922122	0.966785186918462
Merged-chr3-133543703-3	chr3	133543200	133544200	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	690.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	7.90283734785743	8.22247544516771	7.66616732277795	8.11588135743195	8.23991966389601	8.01069501371039	0.239630635401054	0.332968227317124	0.723927708416112
Merged-chr10-17418342-4	chr10	17417852	17418852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-304876.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.50963623091138	6.43820054539191	6.51492945690341	6.44765285663461	6.72613577431775	6.81198814932152	0.291222702515582	0.279800166415389	0.677460636882141
Merged-chr6-124425839-3	chr6	124425354	124426354	+	719.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9999.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	3.41719617781949	3.16579033805564	3.47137251866139	3.41023265228173	3.2798708489346	3.26386933998648	-0.132750787275973	0.830163726736037	0.960219727001139
Merged-chr12-87262867-4	chr12	87262371	87263371	+	969.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142581, intron 2 of 18)	MTD|LTR|ERVL-MaLR	1373.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	5.45422437851855	5.32770743740712	5.49002878679987	5.7082290423367	5.72508557471465	5.66430036372324	0.528519390293874	0.098472981688376	0.418427687285513
Merged-chr11-80044201-2	chr11	80043701	80044701	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36790.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	7.04551603805369	6.53928576138036	6.32413572758026	6.5962706483946	6.69629101892148	6.83605406997668	0.0404914082559211	0.895667862861681	0.975665889379756
Merged-chr10-43901720-4	chr10	43901211	43902211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130892)	promoter-TSS (NM_130892)	25.0	NM_001081054	76563.0	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	6.96639476664601	7.05576673004414	6.89471192185676	6.82953470294074	7.04771711854521	6.63503917654444	-0.178720205531981	0.49508248350358	0.832258300794288
Merged-chr16-56029378-3	chr16	56028875	56029875	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356449, intron 1 of 5)	CpG	342.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	8.60687667356574	8.91452954163717	8.43238838834265	8.57771230671701	8.62419636403887	8.53227626375788	-0.128524408388521	0.569414944774479	0.8688875602138
Merged-chr9-75037654-4	chr9	75037161	75038161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021548)	promoter-TSS (NM_021548)	47.0	NR_152135	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	5.55920707854028	5.2258479205749	5.14054759167933	5.26538244618991	4.89484904929287	5.13631733538653	-0.462581874003003	0.224964568246917	0.619850054461719
Merged-chr7-127993751-4	chr7	127993237	127994237	+	944.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023258, exon 1 of 3)	5' UTR (NM_023258, exon 1 of 3)	130.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	5.7873895686774	6.0061687849479	6.00673547599361	5.91637133995152	5.81662816106912	5.57987402385737	-0.262748087463906	0.402908014899848	0.778365878954155
Merged-chr6-29348042-4	chr6	29347542	29348542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_184053)	promoter-TSS (NM_184053)	-64.0	NM_001285412	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	7.79047283641025	8.087015479093	7.67954887295667	7.71485822709447	7.79251209598259	7.45817957451294	-0.290364577037612	0.239713870670002	0.636666084161943
Merged-chr3-84771426-1	chr3	84770926	84771926	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-44151.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	6.34915481580443	6.27764128406113	5.95848539119618	6.04754021142477	6.1830275777118	5.72674538783688	-0.342383090003257	0.281032360785721	0.679179223823941
Merged-chr19-46699370-4	chr19	46698855	46699855	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	-8088.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	4.96737811363843	4.96699744691978	5.09356480942002	4.83082800894315	4.66477513101375	5.15695969138783	-0.265870166615521	0.504528663441423	0.837756600898683
Merged-chr11-22629950-2	chr11	22629450	22630450	+	571.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117667.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	3.76279415718058	3.73953343743511	3.79134835261772	3.78727232762906	3.54240193139754	3.90919982519431	-0.0592078701730782	0.913218244689886	0.980560320145079
Merged-chr4-140962453-2	chr4	140961953	140962953	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B3|SINE|B2	1182.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	6.14772518315256	6.29334089198921	6.55399683878445	6.69864750025555	7.16924286066527	7.1782141056443	1.10518827516722	0.000148983427618833	0.00395300160883541
Merged-chr5-102062008-2	chr5	102061508	102062508	+	660.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	7913.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.9061926523594	6.88946430260506	7.02912596665734	7.15576110529368	7.42658095747415	7.10013040978047	0.461790474678446	0.0637401347737527	0.328994954702847
Merged-chr17-34746807-4	chr17	34746308	34747308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2911.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	5.42876562848261	5.5314803700881	5.66794801937368	5.81551471458124	5.74246845841948	5.97012262809694	0.550627366208157	0.0831473072007429	0.381505377849687
Merged-chr6-108340536-3	chr6	108340051	108341051	+	817.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 5 of 61)	L2a|LINE|L2	127455.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.63000616559451	3.96845783135725	3.61264927280477	3.03430705523902	2.93905212492967	3.09421945895777	-3.39250744721948	6.96596621395725e-06	0.000294225439964952
Merged-chr17-74454497-3	chr17	74454007	74455007	+	958.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4601.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	6.90593559787549	6.90857574478808	6.72427924942275	6.84084774248996	6.70467679618027	6.76716295242466	-0.132357843353927	0.59762228990569	0.880433364120803
Merged-chr18-88820273-4	chr18	88819760	88820760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73947.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.06382465597745	4.74295811827495	4.66360126743206	4.7602662265252	4.85004176210089	4.55732846318909	-0.238977200864561	0.568991021094459	0.868833647454249
Merged-chr18-80150193-4	chr18	80149677	80150677	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175028, intron 1 of 3)	intron (NM_175028, intron 1 of 3)	1305.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	6.09373442923899	6.31175336155453	6.04550770030108	6.12620092903213	6.43462589388237	6.06023277694953	0.114129475880978	0.705119746110539	0.92270290989203
Merged-chr10-14475091-4	chr10	14474608	14475608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	69928.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	3.88261794273277	3.667113778386	3.76572042476717	3.87960221330543	3.56416519615071	3.98188775334548	0.118015834435583	0.830338436026613	0.960274647109791
Merged-chr8-117362141-4	chr8	117361626	117362626	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12956.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.95706736287143	5.03995402242307	4.81617627665912	5.21359810006639	5.00417917598339	4.71688321699121	0.118696490412947	0.765562496069195	0.942148336413151
Merged-chr1-43504377-2	chr1	43503877	43504877	+	807.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	58626.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.74915765322199	4.99219958405439	4.69747263534291	5.16235232845158	5.04379631214376	5.16942980211121	0.634839439334627	0.099385223249151	0.420355088502788
Merged-chr4-16080531-4	chr4	16080115	16081115	+	790.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-66727.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	3.49959385518288	3.72035425392632	3.36923888194411	3.37690675505489	3.52757728381899	3.90625298374842	0.255692058872713	0.678210536439855	0.913379457468915
Merged-chr10-62577657-2	chr10	62577157	62578157	+	961.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028197, intron 1 of 6)	intron (NM_028197, intron 1 of 6)	800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	4.0768688030289	4.16734100730268	3.59369731994598	3.85949299587419	3.67965606597518	3.7819350446319	-0.639664184517488	0.25534711542093	0.652446576998149
Merged-chr12-12272999-2	chr12	12272499	12273499	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	10860.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.09941965941383	5.38581018931532	5.42831074297699	5.16832466242221	4.76051752740595	5.22404457806918	-0.522164163273931	0.178933034202517	0.560313860828052
Merged-chr4-105557687-4	chr4	105557208	105558208	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	400361.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.63535437446342	5.92213620414495	5.90631327655834	5.79721463835219	5.75792813624438	5.94410799710513	0.0072850749144774	0.98139106384561	0.995702917139754
Merged-chr15-36496797-4	chr15	36496313	36497313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-22.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	4.25210637429206	4.2981104396166	4.33150220396506	4.21437952586864	3.90776858397881	4.17605047178286	-0.54319915588146	0.253934022972348	0.651117231535132
Merged-chr17-23966340-1	chr17	23965840	23966840	+	631.0	f1_c57bl6.idr	Intergenic	Intergenic	8890.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.31907138806999	5.47437230505294	4.93218380847416	5.29331328050699	5.16870451760109	5.60632832948433	0.168176207068543	0.664469525226117	0.907585158243155
Merged-chr8-125227422-4	chr8	125226999	125227999	+	876.830322	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	173304.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.77668213406818	3.94995588178809	3.86214106206755	3.70759915762311	4.09606491343252	3.72112558191373	0.00369574918695375	0.994584078158799	0.998961028701257
Merged-chr1-64737858-4	chr1	64737346	64738346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022721)	promoter-TSS (NM_022721)	-96.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	5.48526325704006	5.35743148103313	5.56137927834735	5.41256476703383	5.22908690112624	5.23433624259955	-0.334434343031489	0.326961603575634	0.719274035277109
Merged-chr3-89905612-4	chr3	89905102	89906102	+	968.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7594.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	5.98303154731383	6.25784867697873	6.00868763546928	6.31317229725755	6.33678908240309	6.30615029295089	0.375521685705175	0.188508628406955	0.574100439060177
Merged-chr8-104146505-3	chr8	104145991	104146991	+	737.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24022.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	2.53401952633915	2.52861113531572	2.74940332915195	2.69825816739927	2.32351180820453	2.63991236974322	-0.243989228680976	0.765855985344576	1
Merged-chr9-13748327-3	chr9	13747831	13748831	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-850.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	6.41310709648656	6.79771214895264	6.5668481459143	6.71598209883999	7.16038579396232	6.83590380633168	0.499503996301408	0.0805615143695304	0.375560731791894
Merged-chr6-56714314-2	chr6	56713814	56714814	+	907.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-591.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	4.96941208476676	5.14838618308005	4.98954388658125	5.39087970235114	5.72689268098173	5.3331657706929	0.930325144144733	0.0106918690305817	0.105346244913753
Merged-chr14-93697867-4	chr14	93697391	93698391	+	842.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	192778.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.56460470799482	3.76673706131971	3.55491474427046	3.69623153107628	3.37993372166878	3.51480258660493	-0.361195275927587	0.533096660956098	0.85218448791276
Merged-chr12-76766530-2	chr12	76766030	76767030	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154884, intron 1 of 2)	intron (NR_154884, intron 1 of 2)	992.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	4.59018622874337	4.14511597416909	4.37939718713337	4.35924963854657	4.39278165776914	4.11699172243344	-0.216039006798878	0.651240487059058	0.902749116169828
Merged-chr10-8519841-3	chr10	8519336	8520336	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1011.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	6.32822562979976	6.39866895075619	6.12268511128026	5.97864032977758	6.43115573101301	6.24750110901161	-0.0931172762550852	0.757106698665059	0.939819795914786
Merged-chr17-74296677-2	chr17	74296177	74297177	+	821.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1814.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	3.57508474683503	3.63070139652657	3.56639359386681	3.60105426155264	3.50501838815559	3.68910252587704	0.00757952652349928	0.989111346828559	0.997515082925215
Merged-chr12-79136059-4	chr12	79135543	79136543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	5255.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	6.57971217830302	6.42895363997946	6.55815093275948	5.86875679609262	6.32767677407667	6.12023977213034	-0.649596521642718	0.0283480436121513	0.201502136757209
Merged-chr9-90216204-1	chr9	90215704	90216704	+	970.0	f1_balb.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53226.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	5.5748182913126	5.57375663563003	5.65932753405654	5.24915654568293	5.29197310200709	5.47659048566094	-0.510481884602545	0.122929838832589	0.469100941508007
Merged-chr14-47542639-4	chr14	47542135	47543135	+	910.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	25799.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	5.47621558185549	5.55548393005162	5.86066822171945	6.35203742317965	6.44819829988922	6.23301182071643	1.26440492345086	3.21293418696312e-05	0.00109119113399521
Merged-chr9-95700514-3	chr9	95700019	95701019	+	976.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	49839.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	3.97400115890624	3.99244608559715	3.97447189976682	4.16765466685727	4.26933574136253	4.09361711787628	0.589119035858529	0.218882812273408	0.613128894826908
Merged-chr11-6528820-4	chr11	6528319	6529319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045893)	promoter-TSS (NR_045893)	-59.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	7.73225802774762	7.97965160296286	7.57004938801638	7.7873830703982	7.84927082583735	7.30694398627327	-0.141176324602375	0.595388672102255	0.879485821168365
Merged-chr6-34866441-4	chr6	34865945	34866945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	3299.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.20724244154624	6.12499438331184	5.97645094467212	6.06355249170805	6.29153346332012	6.10662930208767	0.0877190862481857	0.762923099958031	0.941663714620562
Merged-chr7-27451459-4	chr7	27450966	27451966	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-952.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	5.24048610786416	5.28906559358831	5.36741050804369	5.69408052128946	5.8308097120301	5.57813398491012	0.806450227677038	0.0141308691797317	0.127624157463054
Merged-chr14-63860268-4	chr14	63859746	63860746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028228)	promoter-TSS (NM_028228)	-66.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	6.19519166450352	6.37035532563644	6.54895569115326	6.51319000977026	6.23132818190042	6.35931476424402	-0.00264991989542726	0.992611734731115	0.998523796268552
Merged-chr10-29357681-4	chr10	29357136	29358136	+	865.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284279)	promoter-TSS (NM_001284279)	77.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	3.31536340229569	3.3639834479938	3.43116887836916	3.21393442388545	3.11020138996778	3.65203587800843	-0.121263689986643	0.850665870169087	0.964981271430729
Merged-chr5-149274779-8	chr5	149274287	149275287	+	965.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	MT2B|LTR|ERVL	9783.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	6.07317783317656	6.20750810972677	6.37942232338423	6.04831470172101	6.1137011496486	5.93784326927492	-0.299965234161845	0.304870051188611	0.701208702194819
Merged-chr4-149172493-2	chr4	149171993	149172993	+	830.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5788.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	5.48850646237485	5.37348301864069	5.90483059286077	5.41616292009485	5.57253305607072	5.54745469658956	-0.15192293955125	0.665025600400627	0.907721942545399
Merged-chr9-107614003-2	chr9	107613503	107614503	+	829.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008138)	TTS (NM_008138)	-4762.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	3.59170138425229	3.30395555587546	3.95821745275192	3.37025441224431	3.66269897411151	4.38141421406947	0.708624051070499	0.303614114690386	0.700139213900109
Merged-chr18-20887068-3	chr18	20886590	20887590	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	RSINE1|SINE|B4	8988.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	6.73134628160047	7.14441551262425	6.81404774246651	6.80758432852217	6.99288616210379	7.04015477369174	0.0523917285464409	0.845115328124405	0.963760118842549
Merged-chr1-85703523-1	chr1	85703023	85704023	+	1000.0	f0_c57.idr	intron (NM_013673, intron 17 of 19)	RLTR53B_Mm|LTR|ERVK	33083.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	7.79543443087424	7.63588404354928	7.74086173881148	7.92395788204817	7.89350121714885	7.69961553887327	0.175962055137847	0.42648263731973	0.793840707522572
Merged-chr9-69989414-4	chr9	69988904	69989904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016787)	promoter-TSS (NM_016787)	-62.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	8.04566783185934	8.15746783640404	8.18542564784684	8.01460823311401	7.911870038321	8.19664160284531	-0.125026819853354	0.564969773314917	0.866552670637515
Merged-chr11-111227498-4	chr11	111226978	111227978	+	959.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161314.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	3.61592524066036	3.69211852709906	3.29988689778487	3.43665563059155	3.30815254615093	3.489716312073	-0.539143716004669	0.373886092642378	0.757605542484584
Merged-chr7-91506837-3	chr7	91506351	91507351	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	416065.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	2.97220154000085	3.17007153813009	3.00062966778341	2.4872584443532	2.5391469247921	2.70399111580654	-2.89383150950706	0.000833915506270561	0.0156315479715614
Merged-chr5-113736469-4	chr5	113735972	113736972	+	803.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001010825, intron 1 of 2)	intron (NM_001010825, intron 1 of 2)	690.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	6.03587548466709	6.23543143771419	6.19709601565947	6.5196432438051	6.00724190113575	6.08405360745037	0.112443418265209	0.717802064637734	0.927191179259769
Merged-chr1-134963052-2	chr1	134962552	134963552	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026024, intron 1 of 6)	B1F|SINE|Alu	487.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	6.03679538019802	6.3548098049017	5.51595942708062	6.16573434130574	6.37827235046646	5.47978024635972	0.0824710285172228	0.840507366536354	0.962819298477451
Merged-chr8-56313179-3	chr8	56312674	56313674	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	18622.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.92790899640327	6.09626483906658	6.1060303435449	5.99953806788957	6.14879938893744	6.41669044406094	0.252628509855496	0.399317517294626	0.775775529529442
Merged-chr6-56485292-3	chr6	56484787	56485787	+	758.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115653.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	2.63906890185952	2.65936270477895	2.57285128589064	2.76490944179737	2.58086245532238	2.77264133077909	0.434509199445713	0.564274771573721	1
Merged-chr7-78912512-4	chr7	78912020	78913020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-904.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	5.83051798585452	6.0460939090144	5.73788582653281	5.55899913166434	5.47785961217582	5.72139896129247	-0.556533461393812	0.0823170020030707	0.379332363801987
Merged-chr4-41165716-2	chr4	41165216	41166216	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026275, intron 1 of 4)	RLTR16|LTR|ERVK	29695.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	3.16289465035594	3.13673344757317	3.54905291636808	3.03936040915374	2.93171755316155	3.25987826178776	-0.90558358388004	0.183668114772777	0.566988699323691
Merged-chr6-99666161-4	chr6	99665683	99666683	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	L2a|LINE|L2	588.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	6.59260654022762	6.27410028364139	6.3007008838207	6.62296964283446	6.5391911778389	6.19034636729859	0.116180706453698	0.69306822758758	0.918823160537068
Merged-chr3-65956115-3	chr3	65955588	65956588	+	810.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	2161.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.66615489130833	5.75439445570299	5.57155182559776	5.94106355912387	6.12078369312238	5.99684791666195	0.62785027835814	0.0391881412212188	0.245574009066179
Merged-chr6-116675018-4	chr6	116674505	116675505	+	733.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.19160600690978	6.39256010539653	6.87425005770307	6.4199875378881	6.69169418865393	6.8232220340522	0.231492235220167	0.46272454934078	0.815421548245998
Merged-chr17-24549013-7	chr17	24548497	24549497	+	915.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-953.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	6.74943316808079	6.69186460952059	6.68738076634608	7.02519689293295	7.0287893014236	7.10137373040492	0.523021325514603	0.0309287201745665	0.212863271156768
Merged-chr10-60255997-2	chr10	60255497	60256497	+	765.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-21631.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	2.16704549945808	2.13622888996333	2.33461305116446	2.17377786448585	2.23493578187686	2.01023513302476	-0.474374482460837	0.608390731637913	1
Merged-chr19-21714636-4	chr19	21714151	21715151	+	780.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61342.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	5.70617016514123	5.82548557080471	6.14267221469818	6.14367128941718	5.9094418352881	6.07770161884156	0.262966113425477	0.401745212986386	0.777753227258936
Merged-chr1-157014279-4	chr1	157013897	157014897	+	897.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74771.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	7.29186698045772	7.16143502205442	6.91046682525602	6.28400372944336	6.15230029732252	6.34764264454131	-1.39262393698577	1.93894896560403e-07	1.27841573320111e-05
Merged-chr19-44360292-4	chr19	44359764	44360764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	26938.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	4.64602943283216	4.49113909034774	5.04653223135993	5.43812341483356	5.16619413865473	5.07736855589114	1.09268861515213	0.00789369974063911	0.0852790142844845
Merged-chr3-87515926-6	chr3	87515427	87516427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9651.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	8.39264320073368	8.44990408408935	7.90425027876538	7.32371652653854	7.3218580990436	6.63029039218779	-1.63171784173103	9.46460732200346e-08	6.80078623531316e-06
Merged-chr10-81176605-4	chr10	81176119	81177119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007907)	promoter-TSS (NM_007907)	-12.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	8.1347248273829	8.40158790962222	7.81114368210838	7.89327246788742	8.15386460456763	7.93381361854804	-0.203196491092258	0.420294364784769	0.789521469804967
Merged-chr14-47354863-1	chr14	47354363	47355363	+	651.0	f1_c57bl6.idr	Intergenic	Intergenic	-18997.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	4.94565520170315	4.87925065829346	5.26409378010447	5.03322684549968	5.64185259091296	5.06269165526858	0.536232284439658	0.192790008088084	0.579815330204255
Merged-chr8-116992749-4	chr8	116992215	116993215	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	734.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	5.60075641925383	5.52323125090408	5.57446091576786	5.32546227294478	5.30567744116822	5.10046980802199	-0.602322956117025	0.0754328883101479	0.361660603313788
Merged-chr7-130865748-4	chr7	130865248	130866248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346515)	promoter-TSS (NM_001346515)	24.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	7.1501309285258	6.80882385362713	6.95323788828265	7.01996865062349	6.65108710872405	6.47539613576009	-0.367261909384681	0.199256128975713	0.587661665256806
Merged-chr3-84715239-4	chr3	84714719	84715719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49027.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.99231756220138	3.96692288264532	3.89209640183434	3.42594986668101	3.63597536720097	3.65182102708244	-1.26087142298899	0.022108895698045	0.172622407173025
Merged-chr5-25663881-2	chr5	25663381	25664381	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	41916.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	3.84240613487256	3.43478606960104	3.93660807266127	3.50711225752633	3.47102532106265	3.95933717317837	-0.310879282122674	0.609019276419128	0.885053989692691
Merged-chr15-31418227-4	chr15	31417755	31418755	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35434.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.75930059520894	3.83788298688714	3.50385968118272	3.69736253117988	3.36418436759041	3.3384014015823	-0.848462605941349	0.162213375789973	0.535591771804088
Merged-chr10-59949405-2	chr10	59948905	59949905	+	724.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029083)	TTS (NM_029083)	2365.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	3.72270890157498	3.85725562101384	3.92323476031004	3.57861610261486	3.24387989507929	4.07968845092603	-0.511349138696506	0.42154648178593	0.790410339960872
Merged-chr9-41130768-4	chr9	41130273	41131273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27289.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.71153052484286	4.26766676273438	4.57716531834603	4.46790931023288	4.41765936266933	4.60344964421499	-0.0935230663102947	0.834329744878221	0.961273502395445
Merged-chr5-146963736-4	chr5	146963216	146964216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256101)	promoter-TSS (NM_001256101)	81.0	NM_001256101	76366.0	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	4.98816246053088	5.30634273927429	5.45109184422894	5.27453832036198	5.19957843753736	5.11072736523285	-0.111461905483044	0.763203050679454	0.941742427733164
Merged-chr17-35918628-3	chr17	35918135	35919135	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-637.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	8.55782740964519	9.05097724010053	8.10523361366788	8.66823424453456	9.01914281782485	8.39202317110619	0.118340986827335	0.699762183522433	0.920726320253872
Merged-chr8-70560914-2	chr8	70560414	70561414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21239.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	6.07312425501392	6.4263432572713	5.31170889348942	5.34752710888827	5.1961175766187	5.19565750447214	-1.43652125271464	0.000421067899446647	0.00916698528967992
Merged-chr5-30849336-2	chr5	30848836	30849836	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-12471.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	6.25734175376863	6.70242411480826	6.42669576413039	6.43298787241887	6.82273562711831	6.57608280400701	0.236082593932642	0.423870716898762	0.792272050905538
Merged-chr1-34483141-2	chr1	34482641	34483641	+	613.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-15271.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	3.89878297577318	4.24760357423829	4.18437154103932	4.06820332250219	4.38312688282228	4.25233079604621	0.352228525123881	0.474048184912464	0.821247104271739
Merged-chr2-167922964-2	chr2	167922464	167923464	+	766.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-9363.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.20117626704472	4.38584554626929	4.64159600171175	4.38607531627429	4.15050886280054	4.47541798831325	-0.200389812236455	0.669205542996237	0.909570225267722
Merged-chr12-110737898-4	chr12	110737404	110738404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027149)	promoter-TSS (NM_027149)	7.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	6.82198819968927	6.98062615157401	6.68877154873093	6.97305275512534	6.87623303461197	6.45815662951095	-0.0675051879406608	0.809692963723053	0.954764148309612
Merged-chr9-107581216-4	chr9	107580716	107581716	+	896.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178020)	promoter-TSS (NM_178020)	-80.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	7.3509462899213	7.31339986666597	7.35822308893253	7.43259104583623	7.61668999810398	7.38258642340513	0.217248267512734	0.343940640046225	0.732645864957409
Merged-chr10-117831854-2	chr10	117831354	117832354	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14120.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.15883300549858	6.26774109040542	6.31820973082892	6.23805792574185	6.43138547311207	6.52207579744056	0.253099165307823	0.36265139003286	0.748144036950874
Merged-chr15-89170259-4	chr15	89169735	89170735	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159521, intron 3 of 37)	intron (NM_001159521, intron 3 of 37)	3716.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.14455801963796	5.06539443038378	5.25026530436113	5.15714172751338	4.98675991978653	5.08613754825427	-0.157172153800415	0.664021567068479	0.907483408305124
Merged-chr5-123058594-2	chr5	123058094	123059094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11578.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	7.4502310394175	7.89430989839528	7.22351411795616	7.04491021514535	7.37741384399781	7.10158903704004	-0.551174386188983	0.0525359816653678	0.293167055355907
Merged-chr5-92374332-3	chr5	92373845	92374845	+	912.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11049.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	6.66491740926608	6.19472898931603	6.42378125924529	6.69303167275577	6.54277724790521	6.65676297670013	0.298208293904359	0.294919177403421	0.691802968915873
Merged-chr18-80220604-3	chr18	80220104	80221104	+	879.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025299, intron 3 of 3)	MLT1C-int|LTR|ERVL-MaLR	13737.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	4.23188750118401	4.15488535781109	4.3506498200988	3.3127205791548	3.12237851341859	3.99241696695851	-2.12769356123251	0.110401651260753	0.443978483302541
Merged-chr9-22070151-2	chr9	22069651	22070651	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-851.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	4.67834293080018	4.86746053879598	5.06591021924832	5.17564027355158	4.68221785297351	5.25386475608966	0.386720488729622	0.359571373611407	0.745836092620165
Merged-chr16-22857690-4	chr16	22857200	22858200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	-31.0	NM_001316746	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	8.10715021167677	8.3511165440734	8.0470446883147	8.1109116352267	8.2597017982428	7.9356296560947	-0.0915208784274808	0.690042321400555	0.917630235717783
Merged-chr9-71805847-4	chr9	71805372	71806372	+	992.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34270.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	2.95409212600986	3.22402182187621	2.98472298447487	3.4113486286284	3.12948680272457	3.23873625653194	0.861871731051612	0.201827930285988	0.59145972305094
Merged-chr10-118110222-4	chr10	118109737	118110737	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31550.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.851207268638	4.58923913121615	4.82861490003758	4.77694718150022	4.49159370248592	4.49216306448844	-0.386891292448785	0.360028387012261	0.746290341833145
Merged-chr11-75976878-3	chr11	75976375	75977375	+	681.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23037.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	2.74931878112688	2.87718665053185	2.84523096721768	2.66307937971958	2.46595133882144	2.97586616613893	-0.578446739109502	0.464618027556624	0.816459397744841
Merged-chr10-8834097-4	chr10	8833635	8834635	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	51935.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.59707566035361	4.08515122140911	4.30929933447855	4.52951219465188	4.61053131389855	4.42341284653547	0.446473745863009	0.339327400733256	0.72917126910491
Merged-chr17-32090820-2	chr17	32090320	32091320	+	670.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027316, exon 1 of 9)	non-coding (NR_027316, exon 1 of 9)	603.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	4.64100556799506	4.61689944820649	4.59287048184492	4.74507010344135	4.66209273213673	4.69989645370983	0.196605931530956	0.625277522697709	0.89246806537449
Merged-chr14-63439375-4	chr14	63438990	63439990	+	877.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	3096.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	5.6729988043744	5.60093168139536	5.95252177837491	5.76515167855878	6.08528929582283	5.89770190430414	0.338852852042562	0.290681169853399	0.688530967042335
Merged-chr19-18622081-3	chr19	18621608	18622608	+	696.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	Lx3A|LINE|L1	9705.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.65062170945532	4.66597780314647	4.99689652702922	4.76574846747137	4.72743565639044	4.89027748734421	0.0501196414838261	0.901658070819971	0.977334309271934
Merged-chr6-39274435-3	chr6	39273944	39274944	+	828.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-67671.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.17477398798188	4.55821544597848	4.73448374418709	4.04379601152468	3.88728369614344	4.11195356518793	-1.35256505787886	0.0067250502457489	0.0758955623014071
Merged-chr6-38736526-4	chr6	38736058	38737058	+	908.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	73489.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.96750406365394	3.3947724093898	4.36434816694591	3.48968353399244	3.4686147543314	3.74598044832203	-1.26299160336832	0.0495025481656514	0.282877474652325
Merged-chr18-11351863-3	chr18	11351373	11352373	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-281403.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	5.535442723512	6.20578724227696	5.5263680154237	4.43736590027484	4.3633637027249	4.47497626158618	-3.01657852851989	6.57918621996729e-12	1.1126848109574e-09
Merged-chr5-99983873-4	chr5	99983368	99984368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4930.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	5.8973751030591	5.99604322063875	6.2469630433185	5.97490682471167	5.90977981191864	5.8983679886984	-0.202650850310754	0.500889996141721	0.83531525802105
Merged-chr10-67223027-4	chr10	67222529	67223529	+	932.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	37279.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.30408960134026	5.05517689798282	5.16103666537463	5.28379628270543	5.51531988842187	5.12131742724782	0.30557547267374	0.403700284431866	0.77896002752607
Merged-chr16-64851863-4	chr16	64851338	64852338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	-115.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	7.26817537546707	6.90676205179841	7.05937017851896	7.13588349303056	6.87410948045426	6.91168250830546	-0.165684537713772	0.523976291615922	0.84846104528038
Merged-chr3-9801843-4	chr3	9801350	9802350	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	31829.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.2644097390639	4.36814791220125	4.49119536009941	4.50937065109725	4.60380573865272	4.38594868601967	0.35272067091626	0.420224820659754	0.789521469804967
Merged-chr1-173426894-2	chr1	173426416	173427416	+	827.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	RLTR49|LTR|ERVK	6312.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.79573210271122	7.92233525289863	7.76872810557044	8.05594096364694	8.37312540094327	7.94108557925265	0.442119730470138	0.0593826475520634	0.315577195652389
Merged-chr16-91390281-2	chr16	91389781	91390781	+	796.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 5 of 7)	B3A|SINE|B2	-15954.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	4.26749977580491	4.39442322549159	4.36713490372611	3.75849051766892	3.9824445252202	4.35079456228157	-0.835950644413152	0.100564710476799	0.423021506968984
Merged-chr16-43888840-2	chr16	43888340	43889340	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029128, intron 1 of 7)	intron (NM_029128, intron 1 of 7)	836.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	4.62004796367003	4.87751877159675	4.44499067979765	4.48938928228188	4.31200609462441	4.22820915867671	-0.793118166219995	0.0790865560191092	0.371691823219364
Merged-chr9-71167251-4	chr9	71166748	71167748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	3.52571770232154	3.28057048251031	3.37195219820013	3.60945532029819	3.31353105247478	3.38672383548719	0.165589138043203	0.7850627206824	0.947850129107983
Merged-chr2-4884069-1	chr2	4883569	4884569	+	551.0	f1_c57bl6.idr	intron (NM_175400, intron 1 of 8)	intron (NM_175400, intron 1 of 8)	2505.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	2.8371730507151	2.90699424079323	2.87626966379111	2.80375391861037	2.87004498536565	2.94854609497131	-0.00302082627532053	0.996528261585546	0.999103012741004
Merged-chr3-105894066-3	chr3	105893556	105894556	+	914.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10365.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	6.60290485484727	6.21320518449174	6.43548654775971	6.45285011526195	6.89717549220062	6.74653618062883	0.461632322482582	0.114188292960937	0.451329065204903
Merged-chr5-134176545-7	chr5	134176068	134177068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033572, exon 1 of 11)	exon (NM_033572, exon 1 of 11)	199.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	7.62179862407187	7.50391739162105	7.57287412990859	7.63993674853712	7.27289112942593	7.46121417430299	-0.150532969818701	0.525957667350753	0.849272421520383
Merged-chr3-59235029-3	chr3	59234538	59235538	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 18 of 43)	intron (NM_177855, intron 18 of 43)	-24156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	5.35495233207248	5.40761295382925	5.46853541496128	5.47237426553077	5.41359909611772	5.66650531492166	0.202139444690421	0.543316049823125	0.857551302506722
Merged-chr10-120287917-2	chr10	120287417	120288417	+	873.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60857.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	3.401683463587	3.61014374562646	3.51282707855417	3.56542381779834	3.70382519047822	3.79099932713647	0.614107408675725	0.277184926686078	0.674414033884588
Merged-chr7-25435683-3	chr7	25435131	25436131	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-22745.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	4.39386341559482	4.77093165120942	5.30631214467034	4.80787830375126	4.83262379538898	5.042301820481	0.0565085928001903	0.903154479402761	0.977756599430303
Merged-chr17-26940671-2	chr17	26940171	26941171	+	557.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281491)	promoter-TSS (NM_001281491)	-781.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	5.74298975452209	5.60021475472198	5.89363090756268	6.09649647145965	5.79530643045046	5.67352227901708	0.230721499481948	0.477440260689016	0.823237639056184
Merged-chr17-33824544-4	chr17	33824021	33825021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	41.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	8.70824658970648	8.92416585088488	8.12075701061458	8.4276946055829	8.61998648160685	7.87704260146762	-0.389294504939	0.20152666523979	0.591047651513792
Merged-chr13-30642332-4	chr13	30641863	30642863	+	735.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC3|LINE|L1	-17696.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	2.69677322856415	2.65652018157571	2.56571176846017	2.82468076505297	2.78831268988946	2.89307144722176	1.01025303248313	0.17419512475351	0.55334916165878
Merged-chr10-80265911-2	chr10	80265411	80266411	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	920.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	3.59113825055554	3.3883028073246	3.66809302450953	3.56947770567391	3.84953236060324	3.88537355116014	0.771980885568426	0.173399347532375	0.552199885159617
Merged-chr5-90891188-5	chr5	90890691	90891691	+	980.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008176)	promoter-TSS (NM_008176)	-54.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	6.31888526606244	6.23622878029231	5.29750929140451	4.86908097931983	4.4997526330382	5.03115518306184	-2.42101730948233	2.92862568980512e-08	2.40557834548178e-06
Merged-chr11-80146087-4	chr11	80145599	80146599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	8.34883932817872	8.171472193855	7.80942337708911	8.14636170495171	8.37777327035021	7.76653330334454	-0.00827819737708805	0.97565723607543	0.994540154302743
Merged-chr7-145030844-4	chr7	145030344	145031344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90919.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.95612451144505	7.23353403889524	7.22469499082092	6.98065585810844	7.13716350033302	6.81455094122976	-0.225618745677241	0.380531027279637	0.762620143016066
Merged-chr1-170172836-2	chr1	170172336	170173336	+	764.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	2128.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	2.70057121792262	2.88930095124677	2.73944873362797	2.77678829490902	2.72706685149959	2.87362422918754	0.0446893178270119	0.950807685400957	0.988501616477738
Merged-chr13-67306373-6	chr13	67305842	67306842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003666)	promoter-TSS (NM_001003666)	70.0	NM_001003666	431706.0	Mm.439456	NM_001003666	ENSMUSG00000055341	Zfp457	Rslcan-6	zinc finger protein 457	protein-coding	6.19879723616605	6.71094795742178	6.69189344677166	6.64536912458976	6.52752881034987	6.40719994524021	-0.0300616500829266	0.91906037992581	0.981910789307757
Merged-chr10-128062489-2	chr10	128061989	128062989	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	3507.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	3.82565869323171	3.85694794191663	3.62334987115275	3.63086695071327	3.66704208395788	3.84965115973007	-0.217137624647381	0.688913800427327	0.917235946766438
Merged-chr4-126058503-4	chr4	126058008	126059008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-57.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	4.30896118333285	4.11791256982251	4.26609602561605	4.54141829456321	4.69136936183197	4.23968921874105	0.737634393666938	0.111050739186335	0.44511514379572
Merged-chr3-9714186-1	chr3	9713686	9714686	+	605.0	f0_balb.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-104101.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.77322004085958	3.97719052690748	4.21140586962407	3.96838926785408	4.04951014732221	4.14752555280728	0.1892367759856	0.709984427780037	0.924166640014037
Merged-chr9-22224558-2	chr9	22224058	22225058	+	901.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1145.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	3.48726097347535	3.49798366285408	3.47048012208376	3.39329830121266	3.37501128573275	3.59341795598249	-0.131745759259033	0.820240014444098	0.95755810916818
Merged-chr12-3921294-1	chr12	3920794	3921794	+	1000.0	f1_balb.idr	Intergenic	Intergenic	29550.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.95674452832838	2.98279501055813	3.11739045956209	3.35773452996973	3.34664140030793	3.24895143191354	1.3375720594095	0.0387204017900809	0.243991582714377
Merged-chr18-7625386-3	chr18	7624943	7625943	+	881.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	1420.0	NM_001081287	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.48442585661911	2.33588515238949	2.42071588825229	2.89056159852962	2.89094696221483	2.94922365457253	3.21801941531436	0.000485587058359393	0.0102725419270846
Merged-chr12-32164552-1	chr12	32164052	32165052	+	750.0	f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	43786.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.3246415737725	4.28811424945168	4.10103055459316	5.21885707872611	5.1672824698791	4.48849539413538	1.80783078661576	0.000151334933537456	0.0040051772104913
Merged-chr14-43925576-2	chr14	43925076	43926076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	-2208.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	6.06286753996516	6.32428795319145	6.0292839094284	6.41095644114352	6.75487900435159	6.22717466248549	0.5662707082957	0.065592613519977	0.334075569654972
Merged-chr12-17554331-4	chr12	17553860	17554860	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9487.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.23880327296219	2.26617667695864	2.37590275072393	2.21116864090747	2.10474969806676	2.1209387785034	-1.06028850974397	0.231488078933146	1
Merged-chr4-6389570-2	chr4	6389070	6390070	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23890.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.50033936354797	4.90491696060771	4.85680842238161	4.97285295625989	4.81495016553933	4.60381722342625	0.106730992624082	0.80079020028697	0.952697697308098
Merged-chr6-83159636-4	chr6	83159118	83160118	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027948, intron 1 of 3)	B2_Mm2|SINE|B2	3214.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	2.84228530828692	2.49717859161909	2.75315609957654	2.57999151660601	2.62703310277798	2.64104842744146	-0.495096810074867	0.524605885308647	1
Merged-chr17-30197779-1	chr17	30197279	30198279	+	684.0	f0_balb.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	192740.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.09023677699125	4.019740799293	3.61269199571167	3.83863547678505	3.31603750123811	3.50800682500185	-1.17900404992738	0.0559855694204875	0.304655602611252
Merged-chr7-47015441-2	chr7	47014941	47015941	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7027.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	7.37018611724504	7.02920111655946	7.09976390776721	7.28382085355796	7.31634447223141	6.93633563515591	0.0312293947633707	0.905243109390734	0.978279198518346
Merged-chr11-59544697-2	chr11	59544197	59545197	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	B2_Mm1t|SINE|B2	2011.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.47879192611948	6.07439092140713	5.81021090700829	5.9628578608681	5.96184210761892	6.32030590507866	-0.13106305890751	0.697094733944752	0.919839094614619
Merged-chr5-142927112-2	chr5	142926612	142927612	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-20358.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.49877353190237	5.68154539860039	5.94288975990638	5.93735341375148	6.35123713051373	6.62518837103499	1.06853144341038	0.00176624217196611	0.0280789714169972
Merged-chr18-88971692-4	chr18	88971195	88972195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175542)	promoter-TSS (NM_175542)	-95.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	4.17671185193203	4.05339019868003	4.19246841564059	4.42135827654719	4.31707104893605	4.35082808686898	0.609006747063617	0.181323094184503	0.563652213858344
Merged-chr3-18641883-4	chr3	18641394	18642394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-161417.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	3.52234743519457	3.86644664850217	4.00076799123041	3.65536958870259	3.62539566177453	4.02363584302856	-0.10900677557143	0.849278129903669	0.964615059351403
Merged-chr8-83699206-4	chr8	83698687	83699687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-8.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	7.03882633388589	7.05937690934176	6.90554224125179	7.09270151157954	7.19687374951669	6.76311245663421	0.0531509640010561	0.837547563080556	0.962141375366527
Merged-chr7-73536674-2	chr7	73536174	73537174	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	5072.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.0935474812642	7.43910223516554	7.23866929031872	7.2534427135721	7.4456511220477	7.27270584394551	0.0945154748582599	0.701260707887212	0.921225520800058
Merged-chr6-127561314-4	chr6	127560829	127561829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16646.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.64052652300438	4.01872561811809	3.78330858842196	3.95864689028766	3.73347101769054	3.74784590320364	-0.0340182266417084	0.95022055501414	0.988400419899929
Merged-chr17-45563836-4	chr17	45563321	45564321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-115.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	7.08495847967335	6.78808046019135	6.88630242470555	6.5601173431506	6.74077285279981	7.0120200239976	-0.231973246748788	0.395197672841805	0.772579826044138
Merged-chr14-121369257-2	chr14	121368670	121369670	+	714.5	f0_balb.idr|f1_balb.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	10060.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	2.89868449540664	2.90253932609772	2.71483221936229	2.94309165308809	2.62515001403855	2.91521362770036	-0.0639936325895508	0.931489971755353	0.984925910690137
Merged-chr9-124256893-2	chr9	124256393	124257393	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55801.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	3.92264716377999	3.49735863847069	3.52503167512158	3.87242137869346	3.61061462334156	3.70901349516466	0.213350166230416	0.713120498592881	0.925410643276925
Merged-chr7-45341517-4	chr7	45341005	45342005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 25 of 29)	intron (NM_029741, intron 25 of 29)	6236.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	3.41008914246218	3.02529981061911	3.35510392604456	3.09219661247505	3.02457743588369	3.20457136779281	-0.712589850482531	0.283249155647419	0.681192975031373
Merged-chr1-131983140-4	chr1	131982652	131983652	+	722.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145977)	TTS (NM_145977)	12543.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	2.78703653339997	2.83525006387237	3.03036075778758	2.91775817514775	2.80430858510677	2.74000448246986	-0.294605449821258	0.680968169368205	0.914522966124234
Merged-chr19-3768869-4	chr19	3768381	3769381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167889, intron 2 of 10)	CpG-7172	1460.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	7.68411512523172	7.78397237874487	7.62229292804557	7.67682224595376	7.89266141570238	7.6507331314943	0.070625099614398	0.75416100161803	0.938749406988248
Merged-chr7-83581089-1	chr7	83580589	83581589	+	779.5	f0_c57.idr	Intergenic	Intergenic	-3842.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	2.06703019961564	1.8442228513041	2.08068155506536	2.15992335429557	2.17741303509272	2.28851400886516	1.63238596962967	0.0987887018294043	1
Merged-chr3-103140239-3	chr3	103139742	103140742	+	900.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356383)	promoter-TSS (NM_001356383)	-84.0	NM_001356383	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	5.39602800474643	5.32991705096084	5.23224517484394	4.8673384158975	4.14325049390688	4.84734399194606	-1.46802749965816	0.0011837837150195	0.020563731807796
Merged-chr4-88035203-3	chr4	88034717	88035717	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1810.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	2.80081034660475	2.88360673523149	2.84830660509172	2.8817968982197	2.92579267575206	3.15341351597885	0.685539296028599	0.325847087961095	0.718322545901889
Merged-chr16-9532745-2	chr16	9532245	9533245	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	459788.0	NM_008170	14811.0	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|GluRepsilon1|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	2.54908496358259	2.7694340831627	2.6290869630055	2.73400412748755	2.71104011401984	2.9980463492357	0.863699213889063	0.25771408962784	0.655122723295615
Merged-chr5-148678753-3	chr5	148678249	148679249	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	-63091.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	2.13231459687058	2.25056264183969	2.32887717962074	2.67286568190429	2.3595353609754	3.12624298988254	3.46578120846131	0.000959383265598595	0.0174488224620607
Merged-chr11-106135319-4	chr11	106134814	106135814	+	976.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	24613.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	7.45207890260098	7.25634748001465	6.98054298561632	7.25363555777131	7.6693088319023	7.1353149833758	0.19644282681779	0.48407410464956	0.82665199605554
Merged-chr8-117299748-2	chr8	117299248	117300248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	42729.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.03580045978759	2.92793601255086	3.08095850527043	2.94353738239612	3.21855542954338	3.09455993860912	0.363613362954515	0.5882311410371	0.876237788811978
Merged-chr11-93967467-2	chr11	93966967	93967967	+	770.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008704, intron 1 of 4)	intron (NM_008704, intron 1 of 4)	1054.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	4.75636533622802	5.20336152071101	4.64056866458474	5.40287046383646	5.51712123266392	5.11606443163547	0.944560673602628	0.0227219939920643	0.175760126065974
Merged-chr14-54443362-2	chr14	54442862	54443862	+	694.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008608)	TTS (NM_008608)	11764.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	4.71871514361571	4.22092975712386	4.23960181826047	4.88563172921978	4.46986758453749	4.74474532233818	0.689785139915636	0.146972408762044	0.511514145402049
Merged-chr4-59440163-4	chr4	59439643	59440643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1510.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.66050095387312	6.54214660497279	6.88242211408301	6.45589825491332	6.44084527239301	6.77281239104948	-0.22195054951344	0.425346801672262	0.793032706839624
Merged-chr6-99401445-3	chr6	99400944	99401944	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	33901.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.87000281442158	2.85225536635323	2.9386768536281	2.84922943544023	2.61812039900761	3.12395522339682	-0.0591368505341835	0.936528457854522	0.986037792257163
Merged-chr2-167941650-2	chr2	167941150	167942150	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	B3A|SINE|B2	9323.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.522373287354	5.43139973281404	5.67264152893983	5.47844362097568	5.6934683991026	5.78425024875787	0.219520087363226	0.503838648435821	0.837262467228148
Merged-chr9-40797256-4	chr9	40796842	40797842	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-3931.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.08288307331899	3.70700661035323	4.40949700649775	3.67812142713975	3.42694457508765	4.40058717621429	-0.5390194313623	0.411226749352092	0.783877099438722
Merged-chr11-96404507-1	chr11	96404007	96405007	+	925.0	f0_balb.idr	Intergenic	Intergenic	38749.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	4.04151823953437	4.7144919716306	4.4877578201977	3.53707353695326	3.35970797465261	3.59726339707731	-3.21207784346958	2.68559097890198e-07	1.69804448459328e-05
Merged-chr15-30610832-4	chr15	30610344	30611344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-428282.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	5.67357164074595	5.84039498196805	5.85830184535168	6.269295739891	6.11526292186946	6.12676073419627	0.665016307310437	0.0240862347825301	0.182532497450582
Merged-chr6-148578281-1	chr6	148577781	148578781	+	1000.0	f0_c57.idr	Intergenic	MLT2B2|LTR|ERVL	36028.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	6.4734825710483	6.13218367459814	6.31461312763396	7.01080193807503	7.02559150246602	6.65332261335149	0.954322911930273	0.00069585317506681	0.0136134713613256
Merged-chr6-33837033-4	chr6	33836515	33837515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-192433.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.43657069334355	5.67277519166614	5.81953999257827	5.6034581920007	6.09848560545542	5.83215630660747	0.405699408860491	0.234107825307768	0.63036877369004
Merged-chr2-167931601-3	chr2	167931088	167932088	+	938.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-739.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.07549695038579	7.25609824630316	7.20744559264502	7.16539877233502	7.45770252077373	7.04881685317054	0.097036335944283	0.701829007919343	0.921589091285891
Merged-chr4-134117179-4	chr4	134116658	134117658	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	11595.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	3.80910926775285	3.89035134878294	4.15343615008978	5.25149266564704	5.30764266324809	5.27723288311005	3.5078009596137	3.06414360781186e-13	6.42219801810602e-11
Merged-chr1-105746697-4	chr1	105746177	105747177	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-34046.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.0952012406952	5.90494132021668	5.76886229775625	5.83724574028124	5.94920165296837	6.17672391614925	0.0878877777238325	0.777412089898046	0.945093216103975
Merged-chr14-122181615-4	chr14	122181108	122182108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029556)	promoter-TSS (NM_029556)	-86.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	4.1219999267136	3.97629382372353	4.00709346046368	3.96624646496868	4.25704966956281	4.42948358663471	0.532960272767452	0.281297991783255	0.679465957393784
Merged-chr17-29399380-4	chr17	29398884	29399884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38470.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.24157539995458	6.29965014436948	6.38004455358969	6.54110109900511	6.82316814491639	6.53126443896731	0.556016625173677	0.0418191878587718	0.255859631128874
Merged-chr3-31135643-3	chr3	31135057	31136057	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14363.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	5.44963442507284	5.13191096900334	5.5649240481366	5.42116818861228	5.56521216477032	5.48824464461512	0.213162621738084	0.541278165825152	0.856797425729538
Merged-chr11-55468764-4	chr11	55468243	55469243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	8.75428587825249	9.04228365240975	8.74725428948665	8.55891619552608	8.93983056703519	8.45141460331704	-0.252169965755907	0.292256856261503	0.68951252554772
Merged-chr9-108992531-2	chr9	108992031	108993031	+	812.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	629.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	4.15826692887327	4.30480627942347	4.31419669838205	4.39517883300146	4.41594539875633	4.19710706838655	0.234890119356456	0.605700234369865	0.883581756351046
Merged-chr12-84801783-4	chr12	84801235	84802235	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	28465.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	3.4028630143893	3.31761647156017	3.52446644996438	3.80649255625226	3.39621409901231	3.3695561934767	0.470067863118153	0.440411949205479	0.801772140845611
Merged-chr1-171845639-4	chr1	171845128	171846128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5931.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.06375294557393	6.81555367111895	6.60456504886092	6.76651992496518	6.68625303844649	6.59358716662862	-0.256170953012993	0.344532740752437	0.733150745942016
Merged-chr19-11773553-2	chr19	11773050	11774050	+	760.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 3 of 3)	intron (NM_025606, intron 3 of 3)	3135.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	3.34021396728871	3.20110725319912	3.43891203114648	3.0340453032453	3.18129920999748	3.17941699705797	-0.803155938330218	0.209990893057657	0.60193932923403
Merged-chr1-43810737-2	chr1	43810237	43811237	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16971.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	4.75923458474961	4.78238786692578	5.20461781175566	4.94164349609205	4.79050952774619	4.79500231218872	-0.164797595040149	0.684877668002098	0.916042498883771
Merged-chr17-35896054-1	chr17	35895554	35896554	+	543.0	f1_balb.idr	exon (NM_001033630, exon 2 of 6)	exon (NM_001033630, exon 2 of 6)	1324.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	2.55381376354401	2.52288219260597	2.77279756343322	2.70077128238662	2.87080430098344	3.07512863793041	1.46128434709909	0.0587284539117724	0.313610396168063
Merged-chr13-55182748-4	chr13	55182232	55183232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27050.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	7.06596216159338	7.15248081759829	6.47947293226737	7.35387913857227	7.54036508569679	7.05555818013652	0.590473279535479	0.0503245461763196	0.285440002606626
Merged-chr3-108591917-2	chr3	108591417	108592417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358055, exon 1 of 15)	5' UTR (NM_001358055, exon 1 of 15)	184.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	4.92475119118109	5.18831049224249	4.73869536752678	4.77712525192086	4.82635698786938	4.92170742274394	-0.299187980391485	0.453591776221988	0.809837238834442
Merged-chr9-13575130-4	chr9	13574595	13575595	+	802.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-44894.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.81052012505238	4.7598845969635	4.94634285131055	4.82970712821657	4.3224178839463	5.16919594156562	-0.0641751828848513	0.889191805476673	0.974207858658472
Merged-chr4-144895526-2	chr4	144895026	144896026	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	2389.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.80311385416002	4.81465956729142	5.15620745284569	4.74476922574989	4.37624527399189	4.85978470615833	-0.598992807333318	0.164625002974088	0.539208350811795
Merged-chr6-124921758-4	chr6	124921260	124922260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	7SLRNA|srpRNA|srpRNA	-3814.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	4.68861691561707	4.88078254327909	4.86052027585982	4.53829028613862	4.72675119167491	4.99392310047405	-0.121920423776206	0.767552879129087	0.942623903630385
Merged-chr4-148500344-3	chr4	148499863	148500863	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	99.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	6.54191497473675	6.96620005141247	6.85768374286922	5.62279938845237	5.59742394310721	5.71689298511774	-1.95658446024736	7.19290850186954e-11	9.84387385894014e-09
Merged-chr7-132735900-2	chr7	132735400	132736400	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41016.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.76125761407593	4.861848216272	4.94148396346192	4.66605319364388	4.58030653338853	4.67334976928151	-0.503912331551052	0.20545321594191	0.596051434472105
Merged-chr9-14066964-4	chr9	14066468	14067468	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-209333.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	5.17354536345092	5.21760854468738	5.1749305307494	5.44750834573892	5.15345513182076	5.425690307209	0.303146877788706	0.391357883753607	0.770365186330348
Merged-chr3-158031757-4	chr3	158031245	158032245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	27.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	8.53766236378949	8.82477984980438	8.45271290366432	8.60363241666635	8.6253546000532	8.48565435827689	-0.0617887545822234	0.777005626940641	0.944960604705842
Merged-chr8-25609205-4	chr8	25608712	25609712	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	6928.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	4.94447780674629	4.826831923742	4.79458450733479	5.38374724519843	5.6354131406777	5.23371283368945	1.19506575092199	0.00132743435901676	0.0224772401597612
Merged-chr13-91371052-4	chr13	91370534	91371534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	17051.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	6.46290974621855	6.29219227362898	6.62342203710119	5.91506878967744	5.92875141510384	5.8539633176539	-0.939306478017148	0.00124331049646224	0.0213614246932954
Merged-chr4-118366384-3	chr4	118365889	118366889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198170, intron 65 of 71)	intron (NM_198170, intron 65 of 71)	6390.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	4.40880229927714	4.48626189906305	4.94594601655529	3.87610930167886	3.72634472698203	4.05388825935703	-2.11103981330991	4.89449505555229e-05	0.00155383878131398
Merged-chr11-107335092-5	chr11	107334506	107335506	+	905.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B2_Mm2|SINE|B2	135714.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	7.4171891769757	7.50736619833559	6.91044125317748	6.97933641183857	7.32819035490026	6.93894977222388	-0.315269096302584	0.271202439771328	0.668450268328228
Merged-chr3-61368669-2	chr3	61368169	61369169	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028712)	TTS (NM_028712)	4162.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	2.8657976783118	2.96534138553454	3.50347814202392	3.03354157588411	2.93671891701073	3.37568152008558	-0.052863929916163	0.942816276576993	0.987202156853573
Merged-chr13-30604102-4	chr13	30603597	30604597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10946.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.10191226359538	3.51595423370263	3.7070116117064	3.59628574643226	3.36574770270876	3.56088166665284	-1.01353765636519	0.092561750138537	0.405215908567243
Merged-chr2-166012466-4	chr2	166011943	166012943	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	19806.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.38812275123223	5.49182554458266	5.7502791686065	5.48020527710544	5.53119141620061	5.96949398613467	0.232642964848679	0.50897045875188	0.840158243567873
Merged-chr4-154025992-4	chr4	154025486	154026486	+	976.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163722)	promoter-TSS (NM_001163722)	58.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	3.45205850168298	3.84900701963787	3.54820098407136	3.41286097955467	3.06407819984956	3.67104797916844	-0.830899184514135	0.209086575527969	0.600375311496007
Merged-chr14-103826131-4	chr14	103825635	103826635	+	886.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17566.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.41050132026912	5.37665355389938	5.57877809600461	5.15191652974989	5.10013360596342	5.02949427166946	-0.71850947695538	0.0401445145444659	0.249428372626637
Merged-chr5-86078920-4	chr5	86078489	86079489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7243.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	5.22030333133511	5.11254678806432	5.17709178876982	5.59812043873669	5.60658439100993	5.27597398280617	0.675899012468447	0.0520243031125856	0.291347302018578
Merged-chr7-116527203-2	chr7	116526703	116527703	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 7 of 14)	intron (NM_001360375, intron 7 of 14)	22834.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.00965725764844	4.08312278747269	4.45995427144947	4.34883888351463	4.29568512039253	4.40449259291509	0.435482386855559	0.360032531750145	0.746290341833145
Merged-chr13-24393173-4	chr13	24392523	24393523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-22099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.16775472965047	3.78383337477488	4.083597655977	4.1167091248484	4.1280029511488	4.28623514203422	0.444409146497411	0.373352821228683	0.757262615756539
Merged-chr12-111599712-3	chr12	111599228	111600228	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 2 of 16)	intron (NM_021516, intron 2 of 16)	25218.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	4.09358475565093	3.85463463576532	4.3170623382855	4.60138148529034	4.64522767764104	4.70712087436695	1.48339332115147	0.00152300819951809	0.0249904291590419
Merged-chr3-146616735-4	chr3	146616225	146617225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009474, intron 4 of 7)	MLT1J1|LTR|ERVL-MaLR	-1127.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	4.0829305055419	4.05823556277773	4.05858616095087	3.75464015635376	3.52158862272381	4.08105562890336	-0.84979128952088	0.119691006775666	0.462425095964602
Merged-chr4-98922319-3	chr4	98921803	98922803	+	750.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1507.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	4.68526854456141	5.13248420139136	5.11003152510936	5.03189616539341	5.2779098313113	5.29985130331743	0.458753656505253	0.241616928390131	0.638725174362873
Merged-chr6-72380464-4	chr6	72379949	72380949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	19.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	7.1134481903935	7.250710714547	7.49729686016616	7.27318500296529	7.40939602049946	7.17269732850013	0.00718320197241108	0.976991482246385	0.994769134402338
Merged-chr8-95807593-4	chr8	95807077	95808077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-115.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	8.38002640144287	8.81040616466056	8.64418721673696	8.44877412295149	8.61335382612415	8.58081930138387	-0.103774273387468	0.64280094488947	0.899532469670737
Merged-chr18-6241964-4	chr18	6241472	6242472	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	-448.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	6.26395876434677	6.38641114963062	6.40016255117072	6.3804407585148	6.41080904829891	6.20082287288809	-0.012837034140146	0.962642691200506	0.990929979870148
Merged-chr3-144198704-4	chr3	144198208	144199208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161769, intron 2 of 4)	CpG	3624.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.96708575780022	4.32575416786453	4.48151183401743	4.83687906922139	4.74581907414603	4.79811707782386	0.376799468311935	0.404861899317201	0.779791650050306
Merged-chr1-184478681-2	chr1	184478181	184479181	+	616.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79010.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.63818011106341	4.54396803634139	4.44262453364053	4.60921135434597	4.52252558569667	4.59523823831701	0.0584136589592871	0.889025978688876	0.974207858658472
Merged-chr3-85604568-4	chr3	85604062	85605062	+	866.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144896, exon 4 of 13)	exon (NM_144896, exon 4 of 13)	30433.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	5.20435513665586	5.02174139964399	4.9136580358345	5.50133761332735	5.72370623217489	5.24063960957023	0.9087484547643	0.0145071644850767	0.129689475621926
Merged-chr1-72412891-4	chr1	72412367	72413367	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105446.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	4.97696674891516	5.05298824735421	4.34873470583639	5.51276532686378	5.46617372581767	5.0195039007627	1.06483860062246	0.0209970801445401	0.166726314024896
Merged-chr12-111574439-4	chr12	111573949	111574949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	-47.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	6.45609707655072	5.90996639426456	5.89998085006671	6.47046339684773	6.07279215606758	6.27803722574566	0.261336168932012	0.43142362944114	0.796881045962937
Merged-chr4-131874087-4	chr4	131873583	131874583	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020587, intron 1 of 5)	CpG	444.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	7.92942245637031	8.09338117602053	7.76089175867431	8.16096183302371	7.8578406369182	8.06898484835854	0.130909852127815	0.572794156779839	0.869934493236159
Merged-chr4-141640388-2	chr4	141639914	141640914	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 5 of 18)	intron (NM_001347237, intron 5 of 18)	-16580.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	3.66421805664011	3.7688552719821	4.20667031732293	4.08624136710758	3.83863863733106	4.14520713923156	0.403305012131965	0.459443233807844	0.813650156404876
Merged-chr4-133633557-4	chr4	133633057	133634057	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017968)	promoter-TSS (NM_001017968)	-128.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	5.0581678360422	4.92136513032408	5.2054643041655	4.65211120466349	4.1736850926919	4.64623993259147	-1.31164152733999	0.00272287964093403	0.0390832101367671
Merged-chr7-80199170-3	chr7	80198675	80199675	+	619.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	734.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.75727197027965	7.07535646841315	6.73883485638535	7.01348462077788	7.10356938837412	6.39280599850419	0.0231435227284207	0.939974103535168	0.98675756919312
Merged-chr4-53012068-7	chr4	53011571	53012571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025623, intron 1 of 5)	CpG	191.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	6.76439113450163	6.66327404493592	6.41920870282438	6.62100001853587	6.25897088214118	6.38222002687958	-0.327967582306443	0.248003148007636	0.645121275572369
Merged-chr18-9709073-2	chr18	9708573	9709573	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1425.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	5.71053849581415	6.08814168057543	5.3315559176616	4.58788777478988	4.32014460147459	4.47525636208494	-2.81837344574256	5.73304832410573e-11	8.01740310844016e-09
Merged-chr7-80638597-2	chr7	80638094	80639094	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 2 of 4)	intron (NR_040343, intron 2 of 4)	2577.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	3.26051675001331	3.30928012405846	3.19956898730571	3.1576353635545	3.11203324970485	3.59087031239642	0.15029064865688	0.817561238835168	0.956767881392089
Merged-chr19-16038033-3	chr19	16037544	16038544	+	826.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52969.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.04018738803368	4.43379432051509	3.99389362985773	3.99033511388304	3.97612453162853	4.20693630884348	-0.354573023151409	0.484863624821502	0.827172930129731
Merged-chr7-17062662-2	chr7	17062162	17063162	+	889.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162950)	promoter-TSS (NM_001162950)	-235.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	2.75053763177572	2.50006698707258	2.96128918639271	2.80537746358103	2.70898465731849	2.85944539545397	0.229234419384997	0.765477249525142	0.942148336413151
Merged-chr14-54387890-3	chr14	54387362	54388362	+	856.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21610.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	5.05955436561652	5.32048509577482	5.16256498593845	4.37673470131593	3.99005802321527	4.23421992789517	-2.42918564816672	6.53814887312614e-08	4.87042337900698e-06
Merged-chr3-31328007-4	chr3	31327502	31328502	+	924.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17683.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.81324660461187	2.82448935627227	2.986262084597	2.74670922567335	2.81523922064858	2.63067952457982	-0.700262346044044	0.34378287185031	0.732572352000629
Merged-chr4-134854345-3	chr4	134853843	134854843	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-998.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	6.93555471173328	6.93782411606774	6.6656720703748	6.71853258667175	6.88677516678881	6.54927191491226	-0.193192481659402	0.469793585296969	0.819126978705139
Merged-chr15-25413650-4	chr15	25413132	25414132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027376)	promoter-TSS (NR_027376)	132.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.03798350389494	7.0608372701819	6.74686828331933	7.07407762495722	6.61232613159421	6.67355667521258	-0.244903394217295	0.381752557005641	0.76334093111637
Merged-chr18-9488224-2	chr18	9487724	9488724	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-38070.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.86139068279663	3.76566549890965	3.63722956735302	4.01005819127816	3.75755277598335	3.53450932584321	0.0798324135454681	0.887203709787145	0.973836995667151
Merged-chr12-8537287-3	chr12	8536826	8537826	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286385)	TTS (NM_001286385)	2240.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	3.62019450916874	3.66057792041412	3.60864930889319	3.46462422061882	3.25715054670587	3.46272424230001	-0.891367349026509	0.125839676868869	0.4745139364226
Merged-chr15-93270468-4	chr15	93269976	93270976	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	4703.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	5.25050007647271	5.2364685112739	5.48278678760217	5.36967589679926	5.251296151124	5.40271393811115	0.0370945507255077	0.914476938060023	0.980912729144991
Merged-chr5-64282318-2	chr5	64281832	64282832	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 10 of 18)	intron (NM_001289514, intron 10 of 18)	51975.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.60304290526865	2.56822894995222	3.12457674935114	2.66257187642398	2.70779838304136	2.92277793948153	-0.0975180300250734	0.90224683123449	0.977426235982703
Merged-chr4-59040678-3	chr4	59040236	59041236	+	973.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 2 of 2)	intron (NM_025277, intron 2 of 2)	5580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	5.08654605619045	4.79645733584463	4.55400710674139	3.64600698227825	3.35036364110391	3.8412558430916	-4.11730393900238	2.31781240556588e-10	2.84036133493853e-08
Merged-chr10-20723414-4	chr10	20722943	20723943	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	1635.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	6.29681361903299	5.95496939617885	5.96139910047453	6.21934909171279	6.41869569774442	6.04703680532744	0.271148068012093	0.377594270092043	0.759978294360939
Merged-chr16-58501194-6	chr16	58500708	58501708	+	912.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	L1_Mus4|LINE|L1	22218.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.50297105433292	7.52553678651918	7.57403269342192	7.33093366299851	7.69306647920602	7.80482879219947	0.131516356828604	0.589749403321586	0.876999741964957
Merged-chr2-167940368-2	chr2	167939868	167940868	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	8041.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.40032642535783	5.20899285067474	5.79799761874019	5.58366736028153	5.33635921459869	5.50690638609302	-0.00712722374423245	0.984440047519711	0.99660031309163
Merged-chr8-36248117-7	chr8	36247609	36248609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	CpG	1407.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	8.83211690582265	8.99954913928626	8.57916881343056	8.81319901223154	8.88296564971654	8.37641061383233	-0.142122565998119	0.5622304774178	0.865629368014587
Merged-chr15-81015320-2	chr15	81014820	81015820	+	977.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 13 of 13)	intron (NM_001082536, intron 13 of 13)	37555.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	2.01931932532929	2.092719243757	2.29118824645349	1.95548629208183	1.81662001454377	2.10935976655905	-1.42419858077027	0.155677038412746	1
Merged-chr3-116865577-4	chr3	116865080	116866080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 1 of 16)	(TCTG)n|Simple_repeat|Simple_repeat	3900.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	5.31745870744908	5.34697733493453	5.27247546630347	5.35545024249508	5.63703015248083	5.3685337807213	0.303540001658915	0.37594271531683	0.758951282467405
Merged-chr18-79257598-3	chr18	79257093	79258093	+	689.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148202.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	2.35190162281301	2.28350840616342	2.47365398181867	2.4592628825432	2.27858101779207	2.54756981793735	0.380310258201414	0.646100710553776	1
Merged-chr5-23419414-3	chr5	23418902	23419902	+	655.6190190000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14951.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.97971923806479	6.17569145294826	6.05082677089138	6.05386693571693	6.17086086642649	6.40955877012806	0.235596508102981	0.424005537855022	0.792378501826854
Merged-chr8-80952470-4	chr8	80951958	80952958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62448.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	6.93436733105538	6.68857469906949	6.58328498602949	6.67905367832434	6.66299478520687	6.65948676419234	-0.13191498498343	0.616124967092576	0.888272754285876
Merged-chr7-143021538-4	chr7	143021032	143022032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110354)	TTS (NR_110354)	15873.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	7.71057222860832	7.56819003685481	7.44047200260586	7.70215622483207	8.22858272729905	7.83679149704677	0.528597215110412	0.0381145058376088	0.241621474497643
Merged-chr9-20643742-2	chr9	20643242	20644242	+	739.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	406.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	6.96583946025172	6.92963609225068	7.02213844651809	7.13377879272139	7.57353951969509	7.42945955538041	0.637277737519826	0.0115808046828592	0.111503771818022
Merged-chr4-132535142-2	chr4	132534642	132535642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	272.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.56888632598534	5.50418899125536	5.96184158429651	5.79855758448732	6.06515307305767	5.6533368601633	0.329598338363776	0.335149065031072	0.725351478491702
Merged-chr3-8747696-2	chr3	8747196	8748196	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-80658.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	6.40040215905035	6.32255384936248	6.29148558058926	6.27669647293967	6.43466665683562	5.83646137368319	-0.193464679571612	0.530201876902727	0.851070276054813
Merged-chr17-34850304-4	chr17	34849808	34850808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	-83.0	NM_138580	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	6.5649434540178	6.51509173262628	6.40192255147108	6.46840674230394	6.69215565833069	6.76521664992889	0.231984795116034	0.385560818266821	0.766591069902819
Merged-chr13-52588604-2	chr13	52588104	52589104	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5167.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.39261094667781	6.60111569130783	6.68514545885168	6.63350490250442	6.60103394519765	6.39633534535488	-0.00937795013055307	0.972449101687717	0.993868590220018
Merged-chr9-108348729-2	chr9	108348229	108349229	+	613.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	intron (NM_011678, intron 1 of 21)	898.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	5.2199034657785	4.88169884544491	5.14350088542163	5.32705084195498	5.31581946154314	5.36575368320101	0.505862794637857	0.160672638193659	0.533400273274054
Merged-chr14-19415802-4	chr14	19415308	19416308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	186779.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	8.62372017315324	10.0511579531483	6.91473246994657	9.20274161005384	8.82206728313148	7.40393733118502	-0.573191968111912	0.646616354902254	0.901007345871334
Merged-chr11-82099412-3	chr11	82098922	82099922	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-2423.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	6.14920608940587	5.76626455803956	5.8505197224194	6.46308127741496	6.76867280576268	5.80342142321414	0.80776109228953	0.0266884940463757	0.194383863963785
Merged-chr8-70751304-3	chr8	70750820	70751820	+	840.0238039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310465)	TTS (NM_001310465)	-3359.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	5.11424658879088	4.67247223634087	5.2638409705761	4.87751952101793	5.27550458069598	5.29696144204172	0.274638667768363	0.507263607483953	0.838904804247997
Merged-chr17-80775391-4	chr17	80774897	80775897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-47372.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	6.05608234595796	6.11043102976525	5.8249516759534	6.22442363828457	6.33797955318112	6.2358816111724	0.434626837356357	0.133290853138719	0.488390739705249
Merged-chr19-11231466-4	chr19	11230966	11231966	+	930.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	34649.0	NR_045317	75138.0	Mm.490787	NR_045317	ENSMUSG00000097091	4930526L06Rik	-	RIKEN cDNA 4930526L06 gene	ncRNA	4.39224620102031	4.18545498166727	4.41947396365979	4.38651169411911	4.18130799140924	4.40201200786496	-0.0311814347685628	0.945517111707822	0.987909250703712
Merged-chr19-61018082-3	chr19	61017566	61018566	+	710.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	MTE2b|LTR|ERVL-MaLR	122774.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.27163792291699	3.26906576964838	3.62636764470387	3.12390674964962	3.26794414275623	3.16209801078471	-0.817049993863503	0.205186211900856	0.595816936654911
Merged-chr11-75324623-4	chr11	75324130	75325130	+	858.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 5 of 16)	Lx8|LINE|L1	23753.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	5.11714644130153	4.86680473511193	4.86409851816212	5.31402480318828	5.36036350012459	5.570232442085	0.926344773033142	0.0118556478989054	0.113219872646863
Merged-chr7-88251694-4	chr7	88251175	88252175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26410.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.69329775529578	6.48127142237681	6.57777577119904	6.85582475317339	7.10045176360429	6.94575704636958	0.605502087478432	0.0188285384234766	0.155306699083253
Merged-chr12-87330470-1	chr12	87329970	87330970	+	563.0	f0_c57.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-30765.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	4.30350790308317	4.33964904663809	4.45907000929237	4.33526654220912	4.36598199901328	4.5249648243886	0.108946465370914	0.804423281840442	0.953645244705356
Merged-chr13-48624988-2	chr13	48624488	48625488	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207232, intron 1 of 9)	MIRb|SINE|MIR	684.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	5.49904088827241	5.78241340259387	5.89472965770782	5.77065736082019	5.57590320318346	5.45145021608826	-0.219053733492779	0.51400249331368	0.842918670363435
Merged-chr14-20294647-4	chr14	20294127	20295127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-63.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	5.27704407807888	5.51981235591424	5.37442326511251	5.43897616787102	5.75454141958055	5.71622119212993	0.475843839972287	0.160640804783172	0.53337460660229
Merged-chr1-46905893-4	chr1	46905393	46906393	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	19883.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	4.66754710941621	4.3248429112517	5.02694982389337	4.44823616667805	4.47031711337133	4.52121234009003	-0.518786020178515	0.262033283306943	0.659922005577968
Merged-chr5-122343127-3	chr5	122342635	122343635	+	786.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	11060.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	4.20463299262557	4.10013747277043	3.65465281499345	3.91453766674774	3.98089251564304	3.78618193242711	-0.34806496843793	0.526328731254841	0.849395505429032
Merged-chr14-56813711-4	chr14	56813197	56814197	+	943.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	1708.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	5.75995423422346	5.88036925025481	5.99098671173363	6.1222722000172	6.22282157381374	6.07436185780987	0.472263290515527	0.106637465040463	0.435916169724877
Merged-chr4-45981215-4	chr4	45980704	45981704	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355189, intron 1 of 16)	intron (NM_001355189, intron 1 of 16)	8373.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	4.21711680317495	4.0710594099523	4.33443638648951	3.89696628910764	3.95430563120672	4.35971706688208	-0.370469890741479	0.461533361643906	0.814992635038861
Merged-chr19-46290881-2	chr19	46290381	46291381	+	961.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13856.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	2.74910071405543	2.60666289627559	2.83480021747491	2.5424949436439	2.43195784440294	2.90708890165745	-0.505557289075851	0.5296314199885	0.851010354241636
Merged-chr6-145616685-2	chr6	145616185	145617185	+	879.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009449, intron 1 of 4)	intron (NM_009449, intron 1 of 4)	722.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	3.12220217218916	3.41334093597566	3.32972626037847	3.25962538541176	3.4484349654138	3.16802284617652	0.0409718453108821	0.94906201872481	0.988169196639905
Merged-chr7-16011852-2	chr7	16011352	16012352	+	787.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12357.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	4.00785915611291	4.0504277536135	4.24032689710728	4.76214213622535	4.91662077566121	4.87933919132348	1.95781010261814	9.83000824116885e-06	0.000394566003729463
Merged-chr11-23971191-4	chr11	23970690	23971690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75920.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	2.77108388104398	2.98472070757996	2.90519247794327	2.66990521480695	2.58645908112592	3.09101617120644	-0.466531243412317	0.545558101952181	0.858209810368924
Merged-chr10-44459468-4	chr10	44459052	44460052	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	-804.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.55627210855326	6.5516069234419	6.89571215193273	6.62655288377407	6.85551333938036	6.87088735978428	0.189844755172121	0.483181464168808	0.826047610909129
Merged-chr3-119772968-4	chr3	119772477	119773477	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	10411.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	3.27040010002817	3.18699695323123	3.02710129272539	3.3138124439949	3.23371243719054	3.22346615526544	0.361196079743249	0.572102393200769	0.869795143026488
Merged-chr4-36183930-4	chr4	36183441	36184441	+	935.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-338737.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.64779584024019	3.58137290910455	3.74228525526411	3.46438377348772	3.70319854972723	3.60532587914219	-0.193356829215399	0.729698999124561	0.930635866770147
Merged-chr18-34856397-4	chr18	34855896	34856896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4811.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	7.84397206346097	7.61610545297706	7.50502409049523	7.9806657503322	8.1116811984722	7.4425494346468	0.314238842567453	0.247248356274843	0.644145276280485
Merged-chr4-115828031-4	chr4	115827537	115828537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175308)	promoter-TSS (NM_175308)	-55.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	7.52316098349993	7.48660215595744	7.83929437591626	7.28113123008388	7.5545831632988	7.593926337513	-0.201137524587643	0.417053248605538	0.787790390691704
Merged-chr4-126967919-2	chr4	126967419	126968419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	4.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	6.06591818912087	5.5497904814731	6.03146064752265	6.09134283833273	5.75563346985688	5.93362011836731	0.0564780527848498	0.866694360445844	0.969114221403526
Merged-chr4-136602778-4	chr4	136602280	136603280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347221)	promoter-TSS (NM_001347221)	-57.0	NM_001347221	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	6.79931682978915	6.08669641635294	6.20264660425648	6.64934813861707	5.72722630197929	6.2634672421772	-0.227047972959515	0.556179508224799	0.86357390983939
Merged-chr2-71744983-4	chr2	71744478	71745478	+	957.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	25561.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	2.91166267839827	3.01994835837958	2.96620849797775	3.08011095085403	3.10070357460313	3.2666770493484	0.822715338896892	0.215657239456812	0.609048894570221
Merged-chr19-46606978-2	chr19	46606481	46607481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	7875.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.91545651838023	3.76103294669064	4.11629018922172	4.6251088838999	4.29700248487433	4.57043709454483	1.5961044367927	0.00120057685842904	0.0207557862530986
Merged-chr4-155116713-3	chr4	155116214	155117214	+	963.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	30110.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.81982811677087	4.51549340735497	4.44907954215343	4.11750842230276	3.85162209347743	4.09846101557151	-1.61486791756786	0.000815043145122657	0.0153678019531761
Merged-chr10-80751689-4	chr10	80751166	80752166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-3537.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	7.66331046575923	7.3647485596043	7.23566235353178	7.39944329241522	7.8030344494292	7.45249260044202	0.192198500624523	0.464647014896996	0.816459397744841
Merged-chr12-3745941-3	chr12	3745426	3746426	+	965.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61054.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.61824603412467	5.55149020278537	5.55373596671427	5.29214269579804	5.65198850490702	5.13496369284291	-0.339863352076716	0.342657810769037	0.731516324791908
Merged-chr17-69234332-1	chr17	69233832	69234832	+	549.0	f0_balb.idr	intron (NM_001355736, intron 3 of 21)	ORR1E|LTR|ERVL-MaLR	42874.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	3.43969255149645	3.37776427886747	3.52440462000123	3.21255506642213	3.37209638828451	3.48950287720148	-0.327860381399588	0.584520423965999	0.874568023559098
Merged-chr11-117654714-4	chr11	117654237	117655237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	CpG	448.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	7.23444106142754	6.83544369502497	7.11401419139911	7.29344426004029	6.36623353441028	6.59772893848683	-0.382941181636004	0.25802953547012	0.655513341978737
Merged-chr19-55793112-2	chr19	55792612	55793612	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	51302.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.40607731771211	4.60344172030574	4.59947974769004	4.76254117235043	4.51810074210801	4.74352515242633	0.326863489186257	0.438586797369177	0.800615097962194
Merged-chr10-117842180-3	chr10	117841688	117842688	+	910.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	3786.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.96609331255205	6.90183488772568	6.80162081925702	7.31987442713593	7.41598085463507	7.11373366605178	0.609843266982213	0.0131946473250314	0.121975359917922
Merged-chr8-69791275-4	chr8	69790780	69791780	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133224, exon 1 of 26)	exon (NM_133224, exon 1 of 26)	117.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	6.38837365428193	6.73745242525285	7.22342632804829	7.01881519903876	6.99579501122834	7.21447783605403	0.392556171138557	0.203958910705888	0.594202340324761
Merged-chr12-5119895-4	chr12	5119407	5120407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	202554.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	5.32683420963742	5.7529728725553	5.3887739162211	4.99597860431639	5.19487441901561	4.8927652069145	-0.930055596737178	0.014328673844022	0.128758765527915
Merged-chr7-129401465-4	chr7	129400967	129401967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144373.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.55761104351595	4.21473642501306	4.20765799453217	4.26396893383579	4.03659884257644	4.36620915123653	-0.327986366468399	0.495315728577402	0.832476188564848
Merged-chr16-50437926-4	chr16	50437442	50438442	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-5476.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.93636705053583	4.77522172061961	4.63763457333106	4.72407779837734	4.58106373909728	4.34163087179562	-0.538515150058506	0.208901871162162	0.60001059356787
Merged-chr10-62603395-2	chr10	62602895	62603895	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1097.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	5.38803046944723	5.6245862849409	5.66389620769479	5.70849996739035	5.81497479385376	5.58898405691423	0.288336929305542	0.375403606042381	0.758648255004966
Merged-chr4-63560986-3	chr4	63560474	63561474	+	746.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356354, exon 2 of 10)	5' UTR (NM_001356354, exon 2 of 10)	747.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	6.84932444426907	6.95376551207232	7.2082324888724	7.42448341975412	7.3694326185529	7.02550210386444	0.431942181076117	0.0992044511785615	0.419993306230619
Merged-chr7-30626153-4	chr7	30625644	30626644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025628)	promoter-TSS (NM_025628)	7.0	NM_025628	110323.0	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	5.80598516508571	6.15367023743673	6.36046226676801	6.14354051831411	6.14488150009909	6.12615793361816	0.0366601043279228	0.905624707216864	0.978425344945364
Merged-chr12-84019665-2	chr12	84019165	84020165	+	877.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10163.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	6.70274787367513	7.04514421952483	6.79124460622883	6.60942207801362	6.62059156080178	6.48065810442767	-0.443813682190398	0.0957697153446572	0.412621749398306
Merged-chr5-117486281-4	chr5	117485755	117486755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	72253.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	5.92497930904428	5.65835209167199	5.97666674625084	5.78388127514585	5.73561397022994	5.92386566528621	-0.0783538639322561	0.802379786896089	0.953198534492307
Merged-chr5-110232465-3	chr5	110231961	110232961	+	766.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027922, intron 1 of 12)	Lx5b|LINE|L1	1457.0	NM_027922	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	5.17265942121586	4.92723371409653	5.44113333532484	5.24422856185703	5.06403333482846	5.3623016439984	0.073129488089782	0.847869030545294	0.964318271116593
Merged-chr11-114886972-2	chr11	114886456	114887456	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3085.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.16260100879088	3.95660884639371	3.95841053087801	4.09066480566816	4.08702042509911	4.07717592035835	0.151655750822879	0.755167830516656	0.939242515534853
Merged-chr11-113172650-1	chr11	113172150	113173150	+	1000.0	f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	29188.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	3.38401700362554	3.24419144785761	3.5587248963115	4.94606488610233	4.9954284150528	4.73170785489677	6.45482303459989	4.46436738642618e-10	5.18814359622555e-08
Merged-chr12-98734652-4	chr12	98734136	98735136	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	9.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	5.38614235149369	5.38968146957193	5.54630329094117	5.25261520240204	4.93985511232493	5.29209186509843	-0.55900523290324	0.11845155184676	0.459921210483695
Merged-chr4-133469258-3	chr4	133468738	133469738	+	735.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10895.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	3.75005032637755	3.73283868890589	3.60070778102351	3.49627421860892	3.3018446483663	3.13105455023375	-1.40676460596111	0.0252891270671578	0.188325842520532
Merged-chr9-88707747-2	chr9	88707247	88708247	+	717.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	L1M4a1|LINE|L1	11840.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	5.26447618195665	5.29678210142531	5.3824581405956	5.09417418921962	5.26868768394306	5.50144151348046	-0.0422800306546045	0.904985614422783	0.978186201733838
Merged-chr10-118611228-4	chr10	118610729	118611729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54704.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.12271213251135	4.85354811897051	5.22290894031096	5.01563789087191	4.99803651286816	4.87752307622565	-0.210880440076986	0.581785305031717	0.873449500407396
Merged-chr10-57840976-2	chr10	57840476	57841476	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	46432.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	3.30368252667307	3.33906972219421	3.52319312236443	3.3877310027731	3.31962909393461	3.92368593759473	0.638598698905594	0.311629296840474	0.706631105711982
Merged-chr2-43794222-3	chr2	43793770	43794770	+	756.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	45446.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	4.84870024521288	4.71686748387397	4.93409334933819	4.775595928393	4.94691841698106	4.85397361068847	0.0780864282035809	0.84115726442644	0.962869908631108
Merged-chr4-124741885-4	chr4	124741424	124742424	+	919.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126474)	promoter-TSS (NR_126474)	74.0	NR_126474	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	5.98582893504085	5.89584654051546	5.82578257788456	6.05408318358773	5.81665729300236	5.88754233468232	0.0225872733864782	0.940234762065797	0.986792088790777
Merged-chr2-38211642-4	chr2	38211143	38212143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	75741.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	4.01958575991195	4.3646109963973	4.3865102205185	4.35552693176963	4.36241752608548	4.18386738285795	0.118635325302928	0.801942188756741	0.953110913034068
Merged-chr14-44989288-4	chr14	44988667	44989667	+	906.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008964, exon 1 of 2)	exon (NM_008964, exon 1 of 2)	1056.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	7.19048253573012	7.68389925686146	7.46146139727673	7.51957197631511	7.80193901517706	7.50823974204793	0.232239930146098	0.370327642432158	0.754732597028877
Merged-chr4-129884270-3	chr4	129883787	129884787	+	751.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21939.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	5.71765501210391	5.85821231571875	6.07570116781071	5.81632573058932	5.63947446053932	6.34358034129955	0.123434175906317	0.725972616720612	0.929743505822386
Merged-chr9-88966284-4	chr9	88965763	88966763	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	9343.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	3.03589681750297	2.96128044429113	3.02826974126304	3.21741193104455	3.33352768201516	3.21871335166587	1.13063131231176	0.081425690218842	0.377489662088061
Merged-chr1-159231651-1	chr1	159231151	159232151	+	1000.0	f0_c57.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	-549.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	6.46987859512509	6.76842602624259	6.84437424345407	6.98721312101261	7.0670399512751	7.17501282590816	0.5824295040476	0.0255580671845875	0.189518031406905
Merged-chr1-172364814-4	chr1	172364286	172365286	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	-11745.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	4.34026925498834	4.08375733442306	4.42911753075158	4.55529314439382	4.37014891471569	4.27561022514496	0.322297273951875	0.485757499561895	0.827570845088965
Merged-chr10-84573371-1	chr10	84572871	84573871	+	591.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3576.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	4.14980297134212	4.02819370984479	3.8047604907201	3.86183951467068	3.92960124153386	3.70957759486046	-0.505907266708638	0.337516121695851	0.727414835127997
Merged-chr10-62486927-4	chr10	62486419	62487419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133672)	promoter-TSS (NM_133672)	-114.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	8.61874937030116	8.59062975320886	8.42750539292016	8.51621771085569	8.42378730671881	8.32308770971943	-0.175366986875687	0.395800835780779	0.773144649859171
Merged-chr10-8070281-4	chr10	8069778	8070778	+	820.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114155.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.94822086967729	3.6968961404953	4.01790678130228	4.26068842256017	3.9478162326302	4.13344252610008	0.678228768902485	0.187023652487516	0.571917092105154
Merged-chr16-57363163-4	chr16	57362660	57363660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	RMER17B2|LTR|ERVK	9883.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.69813225644554	2.7141213632578	2.53181341684002	2.74994792666498	2.63286710636883	2.85945441255789	0.491830569356624	0.517686746800752	1
Merged-chr15-86213363-6	chr15	86212816	86213816	+	964.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1143.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	8.02742059338648	8.41019366613336	8.23930367722043	8.3489634206732	8.55478705191523	8.00764033408271	0.132163778807404	0.597908231281353	0.880491661353492
Merged-chr2-127089226-1	chr2	127088726	127089726	+	1000.0	f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	intron (NM_026678, intron 5 of 7)	18569.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	3.3868951988986	3.40494228167728	3.36537183933446	3.34647167857658	3.55088966079245	3.37997337868256	0.182551648652671	0.758270663991095	0.940104678746179
Merged-chr7-113369895-4	chr7	113369389	113370389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-550.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	5.66192854175928	5.70433105266394	5.74625162294139	5.85400269502077	5.83385801129985	5.67514121557957	0.170734742315056	0.578420256641553	0.872437129840066
Merged-chr6-66346703-2	chr6	66346203	66347203	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74198.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	2.87866772134433	2.70164303026627	2.85893154865314	2.84575355833591	3.0710958113572	3.21902674698653	1.14156454648627	0.11166626945325	0.446343226625643
Merged-chr16-76341887-4	chr16	76341383	76342383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	RMER15-int|LTR|ERVL	31166.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.35311845849297	5.28079475273432	5.08391854209989	5.5816384179379	6.06075972723685	5.22541324611647	0.828056412022429	0.0355756820465133	0.231626083859646
Merged-chr18-38211056-3	chr18	38210696	38211696	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1434.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	2.280919568541	2.21115046363722	2.42334449158754	2.25331211803013	2.07544608307909	2.37167452185025	-0.483302807894515	0.583528077167449	1
Merged-chr5-99204364-2	chr5	99203864	99204864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48563.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.49557350993906	4.62647048375842	4.70395518484446	4.71306910783583	4.73350777716376	4.61015912006287	0.201875649478065	0.621559359655812	0.890811106104943
Merged-chr17-26496301-2	chr17	26495801	26496801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12171.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.94807880641324	4.84216151766935	5.17823534087943	4.37447329301732	4.43659265397558	4.62018356907393	-1.20856165320704	0.00383085465962679	0.0503407698228405
Merged-chr1-180884488-4	chr1	180884020	180885020	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-8588.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	3.14543169731875	3.17701460686763	3.25511772233819	3.22771276364123	3.15770724422811	3.2128909689999	0.0324502374646398	0.958563915389467	0.99015359851262
Merged-chr17-34116817-2	chr17	34116317	34117317	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037970, intron 2 of 12)	intron (NR_037970, intron 2 of 12)	3083.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	4.24975575224926	4.147102522409	4.5852672297132	4.46679898336966	4.53789934667567	4.76089038634712	0.659683437786232	0.147930646491303	0.51321776824834
Merged-chr5-115539567-2	chr5	115539067	115540067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-19900.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.37042354151906	3.02602371544828	3.31460130339727	3.32383764810059	3.25619778217864	3.33010783391485	0.236010979929571	0.710541462657055	0.924358113435436
Merged-chr5-120605864-4	chr5	120605381	120606381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	6708.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	3.90487067881412	3.61594362545525	3.95929573083445	3.97409517515852	3.61020267554769	3.67302271022123	-0.221303655186246	0.691580716431492	0.91839466501919
Merged-chr17-25829012-4	chr17	25828603	25829603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028101)	promoter-TSS (NM_028101)	60.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	4.84053750660649	4.4835942013488	4.8539969925787	4.79243588462961	4.83107614333703	5.18162247236081	0.463117107170346	0.26891493539846	0.66606540174
Merged-chr3-88531790-4	chr3	88531298	88532298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029890)	promoter-TSS (NM_001029890)	-597.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	4.95488252647986	4.95647005518795	5.06473284686097	5.13347125497916	4.85552666828429	4.75753144563371	-0.130108788344303	0.736825996091757	0.933291991152696
Merged-chr1-191325848-4	chr1	191325348	191326348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-117.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	7.1543218536067	7.03829154738849	7.02907505530758	7.23386433963497	7.13140217097732	6.91860202469997	0.0459328678706987	0.85170647906785	0.96531854415899
Merged-chr3-108232317-3	chr3	108231817	108232817	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	3.08905796314147	2.90953789475973	2.98538619782242	3.46306093824022	3.08552620842499	3.46246559799676	1.49048840882873	0.0291228921992271	0.204936169208565
Merged-chr10-70195517-4	chr10	70195011	70196011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-9153.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	6.76565340187603	6.71704904639533	6.79524178041883	6.98493589666334	6.9943511329287	6.74469189579586	0.252603851059974	0.314392214725521	0.708710692372488
Merged-chr8-128654417-7	chr8	128653936	128654936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31218.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	7.79107183493879	7.76421608707895	7.6131155435792	7.57692741180552	7.76437008869872	7.63194699136319	-0.0949003395091308	0.670354929379935	0.910029595108128
Merged-chr11-97651917-2	chr11	97651417	97652417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11495.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	2.83500913805753	2.72838203819721	2.9103088034534	2.83545544268008	3.13754211121071	3.04200145393432	0.925117866124125	0.192292456949869	0.579363100911928
Merged-chr10-25488644-2	chr10	25488144	25489144	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 11 of 16)	intron (NM_001358754, intron 11 of 16)	47628.0	NM_001195596	100504474.0	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	2.55905749143628	2.51923482036099	2.67756819016756	2.59791448208294	2.41402420062577	2.62789233989858	-0.222965681108056	0.775054216490434	1
Merged-chr5-31699140-2	chr5	31698640	31699640	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	1090.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.29477371094285	6.49245214008533	6.00391038604894	6.58270722880239	6.81168457318357	6.63282285918558	0.629176183053793	0.0306765549531461	0.211775888537408
Merged-chr12-111676562-4	chr12	111676068	111677068	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1537.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	6.72674991251022	6.49583474802788	6.66353700247569	6.85626597694562	7.07330577789703	6.84691252731631	0.476769953630147	0.0659124993866179	0.335071312864229
Merged-chr8-105340510-2	chr8	105340010	105341010	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7460.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	6.62166421554613	6.30383396660433	6.50144115478909	6.83776403072569	6.95181029048011	6.56103497758237	0.509867637029148	0.0668672574807887	0.33802340932818
Merged-chr3-116085641-3	chr3	116085136	116086136	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44052.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.68810809023722	5.23451363066482	4.8702247261747	5.20609817483062	5.40855676732533	4.89770271162704	0.499530957066519	0.233498786444587	0.629830266582389
Merged-chr2-45098268-2	chr2	45097768	45098768	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	12009.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.19202199716075	6.06188547689328	6.09176604072533	6.09319519170814	6.04019014533838	6.31455881965183	0.0470995124648941	0.870456911406608	0.970065609722504
Merged-chr10-37197042-3	chr10	37196561	37197561	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-58135.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.15804400875563	4.37369959689277	4.32250721189373	4.17511591206317	4.06088720632679	4.01532612904596	-0.558655621145981	0.23762809101155	0.634122003684586
Merged-chr3-126599606-4	chr3	126599099	126600099	+	676.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	2648.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.54864131007293	4.82077585794618	4.59420855070404	4.80373226415495	4.41908118793519	4.39670520245886	-0.261005194332053	0.554774824886843	0.862962911166736
Merged-chr17-31047796-3	chr17	31047292	31048292	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-9902.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.07874535418274	6.14838526067893	6.28385836089474	5.85345507675393	6.28124704667157	5.7755768869723	-0.275268560826225	0.389440315092364	0.769119665294917
Merged-chr9-32504124-2	chr9	32503624	32504624	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	37328.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.39778909904233	4.21336133114554	4.25378197673552	4.12357726369091	3.76873918450976	4.48685362493702	-0.390237090780308	0.456902893500108	0.811950878037652
Merged-chr10-125324716-4	chr10	125324230	125325230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	MLT1B-int|LTR|ERVL-MaLR	4233.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.73279610017685	6.71774787575541	6.48154197545626	6.54020288354958	6.56070967369073	6.44768386181671	-0.216848296099936	0.410975462730398	0.783785606749474
Merged-chr9-103111785-1	chr9	103111285	103112285	+	1000.0	f0_c57.idr	promoter-TSS (NM_173781)	promoter-TSS (NM_173781)	-289.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	2.89019644593631	2.95124135971081	3.08798163231457	4.38215157526942	4.06019339115629	3.62714584956634	5.72652449473704	1.66240994244915e-07	1.11553069751056e-05
Merged-chr11-120064187-3	chr11	120063720	120064720	+	775.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009734)	TTS (NM_009734)	-17075.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	4.43557691243322	4.26319442273226	4.58445769723817	4.96722549732405	4.5493149277307	4.69103295928297	0.775624417879175	0.0779296977054837	0.368611422948782
Merged-chr11-97440265-5	chr11	97439779	97440779	+	807.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9881.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.27292132299	3.84945320883213	4.04928735441404	3.69840834899574	3.37431620107071	3.48345458946252	-1.83608924981538	0.00168791082980982	0.027104750790111
Merged-chr9-78191924-4	chr9	78191431	78192431	+	835.770813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010357)	promoter-TSS (NM_010357)	-35.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	3.27122404868427	3.29757190198449	3.41136547542515	3.43865847507784	3.33900264337548	3.19560163719028	0.0299708153929206	0.960921691675178	0.990386809359123
Merged-chr6-48086649-4	chr6	48086148	48087148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347142)	promoter-TSS (NM_001347142)	-55.0	NM_001362062	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	6.38580678406149	5.54796771156829	5.73054680843125	6.2849015993044	5.06822944041202	5.91989662938177	-0.128650235873858	0.85971500603699	0.967423539737178
Merged-chr2-164877500-2	chr2	164876896	164877896	+	862.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1972.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	3.94937077063173	3.85350831330142	4.0562108864448	4.41993024758917	4.16328866280223	4.30820028005993	0.996752368388954	0.039166280409674	0.245476639072624
Merged-chr10-59323267-4	chr10	59322756	59323756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-40.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	7.09936188301383	7.11227825006713	6.88699363576589	7.03961749242655	6.9380943524491	7.14608077181737	-0.00848835451191514	0.972508046290504	0.993868590220018
Merged-chr4-6383622-4	chr4	6383118	6384118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016807, intron 4 of 8)	RLTR49|LTR|ERVK	17938.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.02614509045434	6.79317725571266	6.69837520795697	7.12492198498508	7.05272501513663	6.75740748421662	0.218563607614709	0.412198336396929	0.784340123865907
Merged-chr9-66511017-3	chr9	66510466	66511466	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175206, exon 2 of 2)	3' UTR (NM_175206, exon 2 of 2)	3627.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	5.220749516006	5.23088833225317	5.22690948061076	5.38000926536886	5.26077964901341	5.12148243104869	0.0755536673947681	0.82881797059142	0.95992013599673
Merged-chr3-109467457-4	chr3	109466889	109467889	+	920.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-106618.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.61124894233591	4.60631039340168	4.6870796387582	4.36596056829059	4.08002271908768	3.98455921621879	-1.24350432585217	0.00769228268162058	0.0836569673731912
Merged-chr7-142061037-4	chr7	142060543	142061543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028308)	promoter-TSS (NM_028308)	-9.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	7.46036502669837	7.30024020934903	7.29468658175725	7.23570554325746	6.86963295626164	7.003281783612	-0.469131466197977	0.0602680474943685	0.317793643593879
Merged-chr1-156533689-4	chr1	156533195	156534195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25092.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	6.15133904185769	6.06246192273485	6.10971111806275	5.96359403372893	6.10893374966877	5.78547579020032	-0.234375868202673	0.430354775289236	0.796220434934334
Merged-chr2-11332138-3	chr2	11331670	11332670	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7319.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	5.20243009713462	5.75769745792427	4.99563335037476	5.34344487226364	5.24335794076633	4.67319277538101	-0.484820692492896	0.283273835142653	0.681212949757228
Merged-chr11-106032097-4	chr11	106031595	106032595	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	IAPEz-int|LTR|ERVK	-4777.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	2.81862980374444	2.62531254583843	2.74204664343329	3.27137834076825	3.55373510718474	3.26653144990171	3.42018976018617	4.65616011608206e-05	0.00148611342899485
Merged-chr12-73963727-4	chr12	73963230	73964230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-800.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	5.73902106479087	5.69565460721591	5.99465513761605	5.9686168855007	5.89369480407174	5.94211553484394	0.227740966436115	0.455224173727629	0.810850567748235
Merged-chr3-108563402-5	chr3	108562839	108563839	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	-873.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	7.00825673631243	7.04078305130697	6.90464125109167	7.14534442586101	7.57986003551465	7.30887689303246	0.561949228701477	0.027349743231998	0.197084079052658
Merged-chr12-111601279-2	chr12	111600779	111601779	+	763.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 2 of 16)	RMER15|LTR|ERVL	26769.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	3.45045323908252	3.25782058017488	3.76152080329465	4.17771958119413	4.03471784969601	4.02947174119558	1.99246584678243	0.000657953816327482	0.013039631836374
Merged-chr11-97632928-2	chr11	97632428	97633428	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3212.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	3.39106489470454	3.73429121472381	3.46544896977516	3.72831091445615	3.65936851373924	3.2296880966894	0.0699805266649123	0.912655949072134	0.98038053460359
Merged-chr1-92666168-4	chr1	92665530	92666530	+	899.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17189.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.37156723044107	5.2811173537467	5.2640872671897	5.17676262087071	5.01165625352215	5.05839123902103	-0.464299753435402	0.188499913124744	0.574100439060177
Merged-chr15-98534343-4	chr15	98533822	98534822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289437)	promoter-TSS (NM_001289437)	-53.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	8.12534239961335	7.92039076040706	7.61851988720205	7.84680697154805	7.98145032588129	7.61607992309721	-0.117031769867925	0.642714455114336	0.899501873400506
Merged-chr11-79610412-3	chr11	79609890	79610890	+	773.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12773.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	5.23735983821992	4.92125778323086	4.99370347957114	4.59593889634975	4.47120518992508	4.76553398478002	-1.03746398908634	0.0105863413215198	0.10460376305439
Merged-chr18-35597998-3	chr18	35597448	35598448	+	758.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-669.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	4.99688694784726	4.58523801969837	4.48442700001445	4.60838771328873	4.59696786379298	4.90846562837551	-0.030152908907534	0.945544664326059	0.987909250703712
Merged-chr17-45597174-4	chr17	45596587	45597587	+	937.256226	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	-1185.0	NM_001199114	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	4.89767746881322	4.25733463544045	4.64879794634913	4.96280874773266	4.57832853424362	5.16759790025186	0.652994725819684	0.166020150258868	0.541109862183596
Merged-chr11-20301563-2	chr11	20301063	20302063	+	983.1666869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018861)	TTS (NM_018861)	31150.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	1.93280450154047	2.10816774727834	2.11888388127039	2.19848990520221	2.06924397129242	2.45131387124965	1.38565510112772	0.143715028386543	1
Merged-chr4-137356927-4	chr4	137356419	137357419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	840.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	8.29429778128089	7.92337005124759	7.8293599154536	8.02289083045996	7.76765092130563	8.04062867945312	-0.129279310004354	0.599285586646019	0.880934255570735
Merged-chr1-165717903-4	chr1	165717400	165718400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9806.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	6.68813518831292	7.00497232569792	6.99557905808328	6.70167657532312	6.75065261522964	6.77102963659571	-0.250103419530755	0.334245049822294	0.724872195509535
Merged-chr1-62720359-4	chr1	62719805	62720805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	16988.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	6.16698659383924	6.327967932291	5.97410126411899	5.58674667217885	5.58692367748505	5.89292996100072	-0.858786569524005	0.00616405575776811	0.0711371361293161
Merged-chr19-45591908-4	chr19	45591358	45592358	+	988.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 5 of 8)	intron (NM_013907, intron 5 of 8)	31273.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	5.20734007411483	4.92036687146549	5.0728880421456	5.07877173834337	4.84917355297816	4.67724733818099	-0.404997517259548	0.305929384374941	0.702020471196356
Merged-chr13-60628029-4	chr13	60627512	60628512	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	25801.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.81911542010698	6.5898417504362	6.74792797466166	6.63814795666929	6.75558217247956	6.48576376178431	-0.127652178907137	0.629653936102026	0.894364606069187
Merged-chr6-128651345-2	chr6	128650845	128651845	+	858.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-11040.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	3.68542920922638	3.61680687412617	4.12101381755771	3.67853861587791	3.28388465776277	4.18751818914438	-0.167438094488732	0.79807703648436	0.951930937621884
Merged-chr5-81021136-5	chr5	81020680	81021680	+	820.565735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198702)	promoter-TSS (NM_198702)	-413.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.86909934087455	2.60861647755335	2.83949440345914	2.79946472086198	2.7062234570834	2.72736393065114	-0.163374622089616	0.824865666741363	0.958596193929081
Merged-chr5-140827617-3	chr5	140827111	140828111	+	628.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	2820.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	4.80438695003074	5.19174867585451	5.19662260130192	4.91740968365217	4.72034606451112	4.9629871930698	-0.45654761753731	0.250528433005563	0.647918487779112
Merged-chr15-74958736-2	chr15	74958236	74959236	+	980.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164036, exon 4 of 4)	3' UTR (NM_001164036, exon 4 of 4)	3630.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.99082225689071	5.1138251127536	5.47278208313835	5.92605155897698	5.65633958036509	5.67255182683221	1.08440225177003	0.0022185713918262	0.0334304397629617
Merged-chr15-101262688-4	chr15	101262190	101263190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4156.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.42114972983248	6.30360020007187	6.51064713670797	6.52323848241249	6.73592878941922	6.89161478232426	0.499648967304258	0.0665671379762106	0.337040186000032
Merged-chr10-127030839-4	chr10	127030342	127031342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025537)	promoter-TSS (NM_025537)	-28.0	NM_025537	66399.0	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	5.53288181478917	5.60493790451332	5.63873214774936	5.45621573317773	5.44661487116913	4.90360889780591	-0.541474270880775	0.142937217868482	0.504625568517997
Merged-chr5-125465192-2	chr5	125464692	125465692	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10681.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	3.08021103073679	3.08933177508651	3.04178084855137	3.37963755076508	3.02705201406464	3.29119520901437	0.7070120289709	0.283198531651391	0.681169665885673
Merged-chr12-112630191-2	chr12	112629675	112630675	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	B3|SINE|B2	10128.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	7.56513396492477	7.67039112682761	7.4665643575674	7.42428583644321	7.73389610415167	7.03510884571167	-0.189434721483371	0.488884325454258	0.829423271678195
Merged-chr14-121879440-2	chr14	121878940	121879940	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	-32.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	5.00295336518194	4.58521715159019	4.65623930959846	4.72762058425992	4.91368963804142	4.68194117096467	0.0429151967579269	0.918757459133087	0.981830247255695
Merged-chr1-93119075-4	chr1	93118610	93119610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16130.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	6.90538655173959	6.94436431371789	6.59492110754768	6.85513676327619	6.79909575329758	6.54592367457906	-0.133792289853225	0.620201150700834	0.890026802452616
Merged-chr5-100038556-4	chr5	100038113	100039113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152866, intron 1 of 8)	CpG	609.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	7.31710882979623	7.5338717356583	7.23032005114944	7.28989105437075	7.40897954087326	7.62963982570116	0.107809335798251	0.661905852051451	0.906495637422278
Merged-chr10-94475472-2	chr10	94474972	94475972	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	B3A|SINE|B2	-39385.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.85926031224472	5.4781894483403	5.85011495888999	5.31928959823317	5.47971447059636	5.43570645336175	-0.602404648426169	0.0769496575305311	0.365562495221263
Merged-chr6-113663500-4	chr6	113662979	113663979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	25012.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.85270809375763	7.77926202650203	7.68793017348863	7.73350172730082	7.96498414618316	7.66138541826804	0.0321190720300212	0.887765930593259	0.97386589866981
Merged-chr4-40948423-4	chr4	40947906	40948906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009736)	promoter-TSS (NM_009736)	-112.0	NM_001171739	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	6.62819065437663	6.24492710015405	6.45245071942969	6.644320987737	6.65482193535178	6.69842440495495	0.341117387641956	0.211812296806454	0.604236512672024
Merged-chr2-160367127-4	chr2	160366613	160367613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-48.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.8617022833042	6.4949426413189	6.80096158830601	6.84454340657952	6.64151822292984	6.5331412116557	-0.0677417955492145	0.806108571775657	0.954102910475772
Merged-chr11-51931395-4	chr11	51930889	51931889	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-36242.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.38633150389427	7.28414643805438	7.38950767259666	7.27588954269184	7.40061666511482	7.15740818548961	-0.0942975622242817	0.686753593249096	0.91687527626078
Merged-chr10-81147260-2	chr10	81146760	81147760	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 2 of 2)	PB1D10|SINE|Alu	10989.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.46397759152834	3.27931199210178	3.92376980125708	3.48876793624269	3.46146565176839	4.03350889490772	0.349586777018602	0.590240141647503	0.877133359617561
Merged-chr8-108691989-4	chr8	108691492	108692492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22652.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.44213178258759	5.76594639343629	6.28249313186401	6.49849939665321	6.6530219899367	6.34272632806355	0.518760086751627	0.109298590508703	0.441756599874941
Merged-chr17-53468591-6	chr17	53468094	53469094	+	760.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5273.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	4.54859641029614	4.03211764589833	4.97013332175872	4.67069477833763	4.50520987294519	4.44468636386222	-0.0548841478527813	0.914517995100564	0.980912729144991
Merged-chr8-25981457-2	chr8	25980930	25981930	+	884.43335	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4686.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	6.69863400562451	6.61189424063956	6.95243707401959	6.67441291738117	6.76241204002135	6.93039863033236	0.0550217026947985	0.835608422320841	0.961787999211487
Merged-chr5-113638161-3	chr5	113637663	113638663	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	MIR|SINE|MIR	5440.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.21476992807909	5.35005573722263	6.01059617320209	6.00737477124895	5.94197185957395	5.55339469096801	0.532802477181195	0.17116412167748	0.54913274613843
Merged-chr10-82866094-1	chr10	82865594	82866594	+	688.0	f0_c57.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-532.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.20360633975335	4.07855011577888	4.27639486217865	4.69671511637689	4.75847898850423	4.24993688946444	1.07183704490123	0.0215318587294198	0.169629132849608
Merged-chr14-55795926-2	chr14	55795426	55796426	+	909.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7069.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	3.17515101303843	3.25325096206203	3.30966435893823	3.05579453481038	3.1097350752891	3.2705436034467	-0.429186891572702	0.499280649151523	0.834404070268531
Merged-chr7-90443710-4	chr7	90443192	90444192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145151, exon 1 of 1)	exon (NM_145151, exon 1 of 1)	911.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	7.33560413017721	7.38598630188627	7.43516837685965	7.37841223523371	7.35281321077525	7.27343470841567	-0.0680735721027615	0.762966123807162	0.941663714620562
Merged-chr18-60560747-4	chr18	60560244	60561244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025776)	promoter-TSS (NM_025776)	-42.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	7.51600440061936	7.48094692600345	7.60956419488809	7.33703384268911	7.37078565529604	7.44339466249577	-0.222405640595121	0.31976581045209	0.713689910573685
Merged-chr2-150854972-2	chr2	150854472	150855472	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-12402.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	2.94786796275524	3.10569197538347	3.57894706551436	3.28576721752321	3.09622801865153	3.2898146389653	-0.0320539796836415	0.963008186642946	0.991018409557203
Merged-chr4-102567779-5	chr4	102567304	102568304	+	918.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-2256.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.44785446382059	5.37368738989483	5.91281332761224	5.64838368673028	5.50594377174588	5.76597930568456	0.0959657162446267	0.784987319602568	0.947850129107983
Merged-chr13-52085252-4	chr13	52084756	52085756	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11485.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.48365867167526	3.17763471582602	3.53779915153742	3.3065503254305	3.22159903888696	3.39657183183336	-0.387496063229658	0.533427960802499	0.852457858765356
Merged-chr6-83637878-4	chr6	83637380	83638380	+	999.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	18236.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.40647514929491	7.56255891658951	7.31521497900938	7.35174139393958	7.57170757131365	7.07117806382862	-0.113283320988497	0.659411327557802	0.905402513876497
Merged-chr4-129809485-2	chr4	129809037	129810037	+	704.5	f0_c57.idr|f1_balb.idr	Intergenic	RSINE1|SINE|B4	-10942.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.74841112821858	5.84237843031118	6.07266764019625	7.19724709216983	7.10470483981708	6.84553996140439	1.91326581950779	7.73346086972601e-12	1.27675756358762e-09
Merged-chr1-144335870-4	chr1	144335362	144336362	+	920.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86758.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.01587316184392	3.21450597859456	3.29408992705587	3.16157928485566	2.88715998011597	3.08223831735581	-0.582811513653105	0.387471106731088	0.76768118438771
Merged-chr18-62980643-3	chr18	62980139	62981139	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 2 of 11)	intron (NM_028017, intron 2 of 11)	2723.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	4.93928322187395	4.73833018430399	4.59846406728969	5.17494195952459	5.36075353757315	4.9193350150998	0.862435535000256	0.032238712266048	0.218144162822909
Merged-chr2-27696546-2	chr2	27696046	27697046	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-12746.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.43438780104466	5.62894265397969	5.92866430454279	5.47905380853434	5.50047541427891	5.87825352763407	-0.0880964910662036	0.802271000379355	0.953197339007501
Merged-chr10-127293099-2	chr10	127292599	127293599	+	859.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	2306.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	3.35809780704593	3.91212096130253	3.67087697484683	3.84030984813965	3.77724812427217	3.84495613589459	0.481945036113705	0.40805314927763	0.781926100186554
Merged-chr12-75732126-2	chr12	75731626	75732626	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	B2_Mm2|SINE|B2	3603.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	4.32197611609092	4.3091961195043	4.32170529290209	4.0801680895671	4.13296311283952	4.30171870818814	-0.407239508635513	0.374702648173057	0.758118627242714
Merged-chr5-105059826-2	chr5	105059326	105060326	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6265.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	3.27865467513374	3.25974645790627	3.41409180155578	3.58285011270838	3.68610725240142	3.59441023073291	1.1737908590027	0.0442512941155886	0.264801271540445
Merged-chr16-92732635-1	chr16	92732135	92733135	+	566.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-35306.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.89006178443843	2.81085823975968	2.73955090093878	2.77712712660796	2.61752926510261	2.87467671796492	-0.324363464799023	0.658352096991145	0.905009317087817
Merged-chr4-149780064-6	chr4	149779546	149780546	+	996.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5779.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.26663780678456	7.29425238651409	7.13468350210527	7.07110591955601	7.37011939471691	7.06227448781358	-0.078722640176357	0.750407737289632	0.937550343416037
Merged-chr7-25756921-2	chr7	25756421	25757421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-2162.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	4.25796711255549	4.09076704432629	4.36117943946372	4.24246860040348	4.1478796205388	4.34324244730115	0.0160446844849522	0.972490039817355	0.993868590220018
Merged-chr19-56725320-2	chr19	56724820	56725820	+	975.4166869999999	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007419)	TTS (NM_007419)	2948.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.43679225264009	6.42552717888589	6.72766265467773	7.04423560325362	6.78206467436468	6.7710208162691	0.543752823053713	0.0439065689330717	0.263607049858021
Merged-chr6-8495373-4	chr6	8494884	8495884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13777.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	6.88604488270164	6.92429512354521	6.81427400730732	6.72510513206779	7.10842733847102	6.84266192509893	0.0499809817285276	0.847940424660379	0.964318271116593
Merged-chr17-73935893-2	chr17	73935393	73936393	+	995.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011723, exon 5 of 36)	exon (NM_011723, exon 5 of 36)	14303.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.30809819131326	7.45538089604653	7.09303111114736	7.22008101793109	7.46809810081484	6.59356317689403	-0.208322466620735	0.502905276564229	0.836691193058519
Merged-chr17-34307808-1	chr17	34307308	34308308	+	813.0	f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	1941.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.98574795518785	4.80484174213609	4.41042800512689	4.97173439473695	5.41605520827413	4.76141454374394	0.704819858998767	0.123750640823746	0.470851128156853
Merged-chr7-120948297-4	chr7	120947819	120948819	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025298)	TTS (NM_025298)	30575.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	5.3455549643113	5.46855707852714	5.54095282310922	4.90786029896964	5.18776779355558	5.00878764491161	-0.810725706499944	0.0251607420380708	0.187815109312263
Merged-chr15-80043472-1	chr15	80042972	80043972	+	658.666687	f0_balb.idr	Intergenic	Intergenic	-28664.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.8572075399677	5.81058639854033	6.15073734576424	5.87036043603466	5.43857916586255	5.76369923368406	-0.437363804713776	0.188883328399547	0.574392870927155
Merged-chr4-150874634-2	chr4	150874134	150875134	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	19564.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	3.81112670273182	3.58998094809729	3.93422055856792	3.55227220283768	3.62904953094162	4.00174931134774	-0.152198499956205	0.788440624666262	0.948954880993192
Merged-chr2-156111841-4	chr2	156111277	156112277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029397, intron 1 of 2)	CpG	188.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	7.69960848411327	7.81984273897592	7.5280239805734	7.7064920554588	7.50418864182485	7.38242656412473	-0.220631446783797	0.353796131590432	0.74093981667364
Merged-chr18-60758933-1	chr18	60758433	60759433	+	901.5	f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-10268.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	2.80857464636131	2.61317740914845	2.79783322672862	2.4538440513955	2.24544522895213	2.49678376208476	-2.27326094696451	0.0109730865700589	1
Merged-chr5-100526340-4	chr5	100525857	100526857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359204, intron 2 of 10)	intron (NM_001359204, intron 2 of 10)	8048.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	6.70346111705719	6.70852093352927	6.34978707636012	6.50871180935719	6.7293626704928	6.50625813563825	-0.0251960899219326	0.927723513642825	0.983689096046999
Merged-chr10-62504068-4	chr10	62503571	62504571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	3686.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	6.8566403906325	6.85629338899033	6.80276240144117	6.92927964106756	6.91785600657094	6.52392951901741	-0.0392003430535474	0.882096082628407	0.973002238292341
Merged-chr4-106970941-2	chr4	106970448	106971448	+	681.5	f0_balb.idr|f0_c57.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	47763.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	1.73424311151758	1.67175527916525	1.88763498119401	1.63105217908668	1.57940999566603	1.5537701033308	-1.85636295044899	0.100503801653381	1
Merged-chr12-102404517-1	chr12	102404017	102405017	+	680.0	f1_c57bl6.idr	intron (NM_011175, intron 4 of 13)	intron (NM_011175, intron 4 of 13)	35296.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	2.68970929293476	2.93242623210583	3.02720241786134	3.22169187965338	2.75524002759296	3.26807029421226	0.957909314191786	0.20266844720867	0.59252027125208
Merged-chr2-157514288-3	chr2	157513768	157514768	+	675.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45810.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	4.68203084300579	4.77612678885085	4.79042155519434	4.72507069352478	4.63908809046573	4.39381490477244	-0.345931771557379	0.406135602048578	0.780563846612881
Merged-chr8-119825594-1	chr8	119825094	119826094	+	654.0	f1_balb.idr	intron (NM_028071, intron 2 of 3)	URR1B|DNA|hAT-Charlie	14985.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.4985520790756	7.95303177899508	7.78607915349355	7.58709593756772	8.03852788025914	7.58004698673495	0.00317598164027674	0.990514467734756	0.997892660866058
Merged-chr7-101616660-4	chr7	101616165	101617165	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-35504.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	6.37412463223328	6.24935430045737	6.00104592016553	6.92337110253289	7.0538796397295	6.5545928870469	1.02685163680619	0.000504370374021	0.0105632142163452
Merged-chr15-78982913-4	chr15	78982429	78983429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024716)	promoter-TSS (NM_001024716)	-127.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	6.25133829091734	6.63050002333848	6.54453761323563	6.66109025598615	6.80090689601024	6.23346220531878	0.183879579997892	0.545113557594072	0.858019423019685
Merged-chr11-87462541-4	chr11	87462045	87463045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	34954.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.63040130437738	6.67068603177739	6.22190074091836	6.31741256473623	6.19746713809302	5.95232736656341	-0.59342785826992	0.0491398117172454	0.281713477528241
Merged-chr3-60517704-1	chr3	60517204	60518204	+	823.0	f1_balb.idr	intron (NM_001253711, intron 1 of 7)	C-rich|Low_complexity|Low_complexity	16525.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.63066789481001	4.75161079874218	4.5618105159417	5.03967744391957	5.0211324303324	4.91232975069126	0.762823065210735	0.0517115153785119	0.290165973242887
Merged-chr18-46536095-1	chr18	46535595	46536595	+	553.0	f1_balb.idr	Intergenic	Intergenic	-10124.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	5.17801937319473	5.24710377971169	5.12953181465814	4.90101561600625	5.06323712235939	5.22593742984609	-0.260677211799681	0.475230765918972	0.821758256966855
Merged-chr7-19875643-2	chr7	19875143	19876143	+	694.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177036)	TTS (NM_177036)	12322.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	3.26653065614349	3.1561351431994	3.32159094662896	3.20933912449704	3.4434751692954	3.27982810776881	0.296745828534335	0.633166496654925	0.895945572329466
Merged-chr13-45144150-3	chr13	45143673	45144673	+	855.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-142077.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.94789900112492	2.74592611712135	2.98691194795933	2.98389090850596	3.00879532526873	2.9395522657823	0.408125484445718	0.556160822616191	0.86357390983939
Merged-chr5-72803043-1	chr5	72802543	72803543	+	865.75	f0_balb.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-50266.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	4.49573793081804	4.03592332271437	4.29014110375351	3.89135756289092	3.85800132442367	3.5188088935312	-1.52919559816043	0.00743149411470286	0.0816093134150627
Merged-chr10-39435772-2	chr10	39435272	39436272	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65973.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.36299088671491	5.41135723983316	5.32501481504104	5.74793470150333	5.29164523762368	5.38903431634027	0.234680794163426	0.505590888302261	0.838177729332582
Merged-chr5-8368180-4	chr5	8367681	8368681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098225)	promoter-TSS (NM_001098225)	-21.0	NM_001310439	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	3.13578756953478	3.09548724579803	2.94994621945889	2.71807512828652	2.60384693651699	2.83790429138532	-1.87275134313315	0.0132704778381139	0.122363687938141
Merged-chr13-111489322-3	chr13	111488818	111489818	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 1 of 12)	CpG	809.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	8.70672365763521	8.72803440438713	8.45268850873146	8.74073924786033	8.60164430219121	8.64055476093749	0.0308295088275236	0.882476259223513	0.973184220613163
Merged-chr4-3835642-4	chr4	3835135	3836135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026147)	promoter-TSS (NM_026147)	20.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	6.66246173560593	6.83860056596868	7.0681388830824	6.87199403027277	7.06911516942585	7.17399749720694	0.280572457828337	0.288733785202898	0.686124851873233
Merged-chr5-142424773-3	chr5	142424326	142425326	+	707.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	23329.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.74849524907054	3.36762633734816	4.02661703772486	3.51896736467174	3.47573810309581	3.39781093873282	-0.935476709151779	0.130453452123194	0.482676025154672
Merged-chr3-116808242-4	chr3	116807753	116808753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-87.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	6.82224632483344	7.07203673723353	7.13880309573607	7.17456522251332	7.11057527334938	7.13515330579301	0.191524834995478	0.436655983664673	0.799551248563286
Merged-chr5-123675385-4	chr5	123674892	123675892	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	8969.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	5.16066761030723	5.00804883226786	5.12640315396292	5.44955537043638	5.49674562191661	5.58379654185769	0.818106176881667	0.0171109655316325	0.145564790916683
Merged-chr6-71494491-2	chr6	71493991	71494991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001308303, exon 1 of 4)	5' UTR (NM_001308303, exon 1 of 4)	614.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	7.82131493234302	7.76421530128251	7.65970860251939	7.91431260548499	7.69998707713784	7.63177293970854	0.00480749685921232	0.983010697930888	0.996200895077944
Merged-chr12-55495276-4	chr12	55494781	55495781	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2634.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.0563239205874	3.88943847893463	4.16884637124944	4.00358672856299	3.96171637739041	4.05386820286367	-0.0964963636976315	0.844952996832271	0.963760118842549
Merged-chr4-35220295-3	chr4	35219839	35220839	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	5541.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	5.90769841823993	6.32744894697816	6.37965125537112	6.55417701276835	6.51736067644055	6.06242669154543	0.311576356043944	0.328236899232599	0.720441464292959
Merged-chr5-36485449-5	chr5	36484928	36485928	+	846.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025725, exon 1 of 1)	exon (NM_025725, exon 1 of 1)	840.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	3.60187656385178	3.71207452799381	3.59178837896097	3.49816200795246	3.38927869200914	3.55481043022278	-0.585359752549051	0.301353952029471	0.698077163741839
Merged-chr13-9871103-2	chr13	9870603	9871603	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105782.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	2.55740714404539	2.58712891988376	2.86162658796116	2.5242208816116	2.67234739160988	2.69990930236811	-0.200323957504675	0.795395247606499	1
Merged-chr13-52598017-2	chr13	52597517	52598517	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	RLTR17B_Mm|LTR|ERVK	1135.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.67442031566103	5.9086318698644	5.81967699965782	5.94641885843894	5.16793260638712	5.64902517795879	-0.330312811125112	0.374597359826282	0.758118627242714
Merged-chr7-135689925-4	chr7	135689447	135690447	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081117, exon 14 of 14)	3' UTR (NM_001081117, exon 14 of 14)	26432.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.61453846731639	5.46076577696634	5.85566946056815	5.74966867517374	5.80120391079005	5.84557758204119	0.285747239381583	0.373126300253066	0.757006149061447
Merged-chr6-59186524-2	chr6	59186024	59187024	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22346.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	2.69604172626442	2.708564675412	2.56182865369538	2.62418353114566	2.45210959854481	2.88191690863949	0.00114731584333115	0.998845426937167	1
Merged-chr9-44920920-10	chr9	44920363	44921363	+	998.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013795)	promoter-TSS (NM_013795)	-121.0	NM_013795	27425.0	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	7.25510794609379	7.49378316145854	7.42827550246032	7.60021224076083	7.67857791199862	7.48532123027282	0.291677714003942	0.207260958728661	0.598028441690595
Merged-chr2-169008878-4	chr2	169008371	169009371	+	849.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30602.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	4.12160460045697	4.34224353897552	4.08282760835229	4.16040427373839	4.26180935976524	4.00027591459782	-0.110128230305755	0.820256295099984	0.957558340035067
Merged-chr13-105292901-2	chr13	105292401	105293401	+	802.666626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027934, exon 1 of 8)	5' UTR (NM_027934, exon 1 of 8)	113.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.86464667702343	6.95087018009436	7.06148105408293	7.24791668442773	7.27567297023288	6.99927813190456	0.350990927515508	0.154758380287225	0.523993298349518
Merged-chr17-63896060-4	chr17	63895567	63896567	+	941.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001286415, exon 2 of 18)	5' UTR (NM_001286415, exon 2 of 18)	18001.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	4.76148391583495	4.48827552618903	4.80143939560837	4.7846340424991	4.72878710985086	4.54704023241189	0.0269039159185935	0.948646475255643	0.988151190239158
Merged-chr18-13302953-2	chr18	13302454	13303454	+	778.674988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	295964.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.24115873015797	3.16043050756594	3.08630413496351	3.67509871704674	3.60091764023496	3.46566488531828	1.65354744427588	0.00841008132979345	0.0892129076095683
Merged-chr14-74868772-3	chr14	74868290	74869290	+	747.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	79087.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.90667763072728	3.42941823519879	3.41886584110092	3.49245514320401	3.4522895798252	3.60371780594953	-0.346174628702732	0.568398529055267	0.868549528189122
Merged-chr16-93816590-4	chr16	93816122	93817122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15499.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	7.63722222329489	7.34847849407365	7.20937768392055	7.45706210185149	7.73464983371604	7.29134447472233	0.145147704077164	0.581659042520054	0.873401768686769
Merged-chr12-32709589-4	chr12	32709095	32710095	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-110740.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.05888652313466	6.19670930556181	6.19651476715282	5.87529712741294	5.84488890238988	6.09052613831596	-0.377254723428378	0.198337359639019	0.586636393460951
Merged-chr5-113992464-4	chr5	113991952	113992952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 1 of 14)	L1MB8|LINE|L1	1305.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	5.11199504940197	5.90865603272658	6.08237678659723	6.01359322623578	6.00271530026427	6.14265275048531	0.507419729607862	0.190549152587414	0.576950246568724
Merged-chr10-26762215-2	chr10	26761715	26762715	+	764.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10297.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.35785265549622	4.08957123927604	4.26225727377305	3.66286124460914	3.79235261588013	3.68972228474795	-1.5966937615796	0.0025165217436966	0.036929235859837
Merged-chr17-78417777-4	chr17	78417288	78418288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	CpG	364.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	7.42481408278796	7.22781083610047	7.43255104813266	7.47669982349917	7.47135272584313	7.43772675286374	0.148827464169998	0.514781070981248	0.843210843733192
Merged-chr2-11375263-4	chr2	11374789	11375789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	23211.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.49450740297159	6.04717845318229	5.84430083371196	6.21097439364036	6.39292469275285	5.71770713785013	0.573796244178693	0.108606979333606	0.440290842211482
Merged-chr11-103360441-4	chr11	103359935	103360935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183288, exon 3 of 3)	exon (NM_183288, exon 3 of 3)	3257.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.63054570751737	7.83667880853028	7.79311494617244	7.59513682628928	7.61974490872959	7.34536247430442	-0.322943653485849	0.163569900692565	0.537596251405258
Merged-chr18-4239086-4	chr18	4238588	4239588	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73256.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.87013005371158	4.75478859268076	4.92615992844296	5.07023188741715	5.09941763986077	4.99131442229928	0.460792188729961	0.218230659131205	0.612414823722149
Merged-chr14-70791612-1	chr14	70791112	70792112	+	617.0	f0_c57.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	17231.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	2.99817596536917	3.05677739884297	3.50056859892229	3.95170406129351	3.91905826944414	4.64048918771685	3.75277299415102	0.00327826684168153	0.0450203048956324
Merged-chr4-95307302-4	chr4	95306800	95307800	+	983.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250207.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.09360638545504	2.81188373649276	2.77564655321159	3.26434309326842	3.0268986415298	3.54498335207226	1.69801287502534	0.0240494825120698	0.1823334251357
Merged-chr7-35140054-4	chr7	35139551	35140551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20758.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.69559183232495	5.47842215987249	5.45533980340104	5.32711229331729	5.40743718507015	5.60289425525918	-0.207549042181052	0.53766686751052	0.854765191227326
Merged-chr1-136137262-4	chr1	136136800	136137800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	5910.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	7.93770614295669	7.92476026417519	7.8999889279784	8.13064872628429	8.4315963772073	7.97187501917605	0.394775862908471	0.0883970220412102	0.394663272522671
Merged-chr10-78466968-2	chr10	78466468	78467468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2020.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	3.66424216357571	3.39754635235226	3.27870279890647	3.13295538739526	3.13265743008334	3.17079965684665	-1.30667896381049	0.0423804195860424	0.257984487008224
Merged-chr8-85071679-4	chr8	85071199	85072199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-58.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	7.95447712833362	8.31299110109061	7.98041665726421	7.7331606131783	7.95077588391387	7.58719267212863	-0.461134011271285	0.0588497563976165	0.313976053496593
Merged-chr7-16875130-4	chr7	16874630	16875630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	-187.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	5.95014787734507	6.41938563649654	6.28917866459701	6.08652657597323	6.55629921183206	6.22817725619302	0.133316629585629	0.675543061469571	0.912197928643375
Merged-chr12-91668730-4	chr12	91668259	91669259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-78272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	5.68027156678393	5.23813978665637	4.80232373032814	4.71339239037307	4.6404970350972	4.55886245467088	-1.42737919056522	0.00121552904666181	0.0209794111003186
Merged-chr7-130517154-3	chr7	130516675	130517675	+	892.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271343, intron 1 of 11)	MTD|LTR|ERVL-MaLR	2405.0	NM_001136054	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	4.50762778098658	4.82886059174731	4.83041239862141	4.74451705559623	4.77207264744709	5.06556977529738	0.301328927225655	0.46649664611893	0.817586753758551
Merged-chr1-92217414-4	chr1	92216910	92217910	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-37069.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	6.91508122771267	6.7963680353097	6.94106753990161	6.87975196519378	6.8863062496083	7.09020985338981	0.103104225351081	0.677689875115731	0.913082227579541
Merged-chr16-38392330-3	chr16	38391823	38392823	+	848.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30133.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	4.1714620141749	4.21188318647236	3.9727943144238	4.02550624031591	3.87600184275131	3.77613709870893	-0.682118714482414	0.178053559201322	0.559118345790044
Merged-chr8-110617938-2	chr8	110617438	110618438	+	954.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	-629.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	3.61282720241264	3.523089549454	3.74350161797056	3.90581923840639	3.54484435141978	3.81311963989046	0.452199072068414	0.418829181720315	0.788755230826602
Merged-chr11-53786453-3	chr11	53785913	53786913	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	MTD|LTR|ERVL-MaLR	15940.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.04526212737172	3.68762499702106	4.08584964374248	4.49877462266874	4.63104147933845	4.51308640385015	1.67844812956337	0.000626407619851656	0.0125353836538279
Merged-chr10-77289414-2	chr10	77288914	77289914	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	30114.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	4.22171974022979	4.0975885028749	3.60514846533206	3.9959622616644	3.74239534036004	4.10455362795266	-0.168271633081749	0.767214218589221	0.942573703853445
Merged-chr11-97999385-4	chr11	97998860	97999860	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3187.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	4.55247734210927	4.11167644976906	3.91706520837514	4.68368563903984	4.11723453875421	4.52035505883507	0.594396123023962	0.267930563368105	0.66509446052307
Merged-chr15-35152711-4	chr15	35152213	35153213	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	3093.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	4.62397989789058	4.43951225512645	4.76195514316142	4.50162879209474	4.41659997534056	4.6395739953725	-0.226599726121225	0.597485641025412	0.880433364120803
Merged-chr10-127575332-2	chr10	127574803	127575803	+	885.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 25 of 89)	exon (NM_008512, exon 25 of 89)	-40744.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.35786266823175	3.05400697413434	3.46863969393032	3.1947877114655	3.14450572999427	3.73170729673051	0.295295604077422	0.664458573394731	0.907585158243155
Merged-chr9-20887186-2	chr9	20886686	20887686	+	622.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	-989.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	5.06891953795433	5.45859119150339	5.23004444028766	5.13682089898112	5.35200923954964	5.22874626158273	-0.0399112543132375	0.913073564239091	0.980541282138254
Merged-chr11-80172043-4	chr11	80171526	80172526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11846.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	8.14072517089126	7.54601582676025	7.58083682936881	7.85498283475179	7.93012058345539	7.54663568791087	0.00089048390465608	0.997425457344346	0.999479478481982
Merged-chr6-124728571-2	chr6	124728071	124729071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013545, exon 5 of 16)	exon (NM_013545, exon 5 of 16)	4583.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	4.89526764883331	4.19844198568817	4.78522517715278	4.93233188474898	4.86623425072992	4.9936724544857	0.608942249091845	0.179845843633986	0.561345475440548
Merged-chr16-22013204-2	chr16	22012704	22013704	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 2 of 16)	intron (NR_027488, intron 2 of 16)	3720.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	2.92498374096725	3.01409079406439	2.99480727096059	2.90663614235884	2.9484707161741	2.88535423341443	-0.298456610193616	0.661027727037102	0.906246109292722
Merged-chr12-35026573-2	chr12	35026073	35027073	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-20616.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.91875280096339	6.81951296249465	6.85387690871818	6.56551086196528	6.84581989684082	6.77842382165738	-0.197375322137673	0.440046241756352	0.801567033070239
Merged-chr10-43478655-5	chr10	43478134	43479134	+	911.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	-506.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	6.84866794255183	6.78106590453871	6.45726075181199	6.78721466719613	6.47464298728609	6.31650196216972	-0.267518521124078	0.358043556615614	0.74454984718519
Merged-chr10-68085778-4	chr10	68085270	68086270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106200.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.09563634620273	5.07077102174676	5.19526071850442	4.9466184960045	4.96391970395749	4.83943193216034	-0.41746953479988	0.2588386581152	0.65636933728856
Merged-chr7-101362092-6	chr7	101361604	101362604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14035.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	9.3924307951962	9.63908729052017	9.08447054190532	9.25911254828938	9.60992922378385	8.97003522547505	-0.113087933119082	0.665641845013332	0.907880610488534
Merged-chr7-133776048-2	chr7	133775548	133776548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	755.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	5.02165099731199	5.0382211579621	5.18940725056792	5.239337007951	5.23125047266179	4.97617790994575	0.176714397474244	0.628845841468935	0.893945342282012
Merged-chr5-16467310-4	chr5	16466812	16467812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-86183.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.43411039530731	6.90784355799313	6.38357656111206	6.66642311086472	6.93073005749426	6.67917606250777	0.25438923558143	0.389807563494005	0.769370172759837
Merged-chr18-44381088-4	chr18	44380592	44381592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	CpG	592.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	7.47130997478906	7.78670653814706	7.69691685837167	7.59713192163347	7.8454340615875	7.79619234814762	0.135123015725548	0.565198638563752	0.866591393200771
Merged-chr4-156228887-4	chr4	156228378	156229378	+	847.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008233)	promoter-TSS (NM_001008233)	-336.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	3.76615142863636	3.53729142272983	3.63506679110009	3.91270261550911	4.16147894664497	4.01682744042762	1.23655940799898	0.0206119917546091	0.164595260068859
Merged-chr17-6741384-2	chr17	6740884	6741884	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 10 of 12)	intron (NM_009510, intron 10 of 12)	35554.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	3.18580306141112	2.93728083270473	2.87346792085463	3.13392982233637	2.88183165325855	3.13129274423388	0.182298495594101	0.794533001402818	0.950765829880286
Merged-chr7-97081015-2	chr7	97080520	97081520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-731.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.65822227049174	6.79267086000464	6.11849376561696	6.90917539194982	7.06270739581821	6.85956888089142	0.591541095969601	0.0483132241245798	0.278757623252945
Merged-chr12-99550876-2	chr12	99550376	99551376	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12965.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.6304733727948	3.56904154994403	3.48673844087813	3.82424369064591	3.94294763537046	3.82821023979561	1.02459256014291	0.05961726067839	0.316047011731232
Merged-chr4-135325930-2	chr4	135325430	135326430	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016799, intron 14 of 17)	B2_Mm2|SINE|B2	27284.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	2.67912154806522	2.60394864524785	3.04116166767756	2.59117023040884	2.61202205033266	2.51489756883406	-1.13234556068402	0.156901625627481	0.527761038035113
Merged-chr18-35598608-4	chr18	35598091	35599091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-26.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	7.70300665498239	8.12142722725432	7.8503717713698	7.78882022043517	7.95376644096367	7.63291277813313	-0.145717291257842	0.550817561608642	0.86080292597632
Merged-chr14-54377327-4	chr14	54376808	54377808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	16467.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	7.12795565029305	7.16770051813439	7.04221797560682	6.26462391906039	6.38337921600287	6.0756710031047	-1.34871524553596	4.50251112126025e-07	2.67794814423033e-05
Merged-chr8-117307699-2	chr8	117307199	117308199	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-41471.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.83866690881006	4.82800794108806	5.17344258290385	5.11333792116742	5.12914910773969	5.10763705089151	0.372341083508929	0.323201271469926	0.716590673784795
Merged-chr13-37956910-2	chr13	37956410	37957410	+	616.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	37298.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.25515134479323	3.14036549502063	3.41319676498397	3.60078205654372	3.27235602938074	3.68977571823208	0.990572903696099	0.114130708481759	0.451208627897099
Merged-chr1-179435671-2	chr1	179435171	179436171	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	82370.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	4.31981081254872	4.02143356162976	4.49681819568924	3.76774815348942	4.1777158227841	4.44659154537006	-0.360966696188583	0.501958199335975	0.836141452801646
Merged-chr17-27570724-2	chr17	27570224	27571224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-4997.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	5.10495860149363	5.32701343365029	5.51469511749208	5.15803236216789	5.05465291018849	5.57630922235948	-0.0982972732301057	0.797481188048339	0.951799370596145
Merged-chr1-45865543-4	chr1	45865027	45866027	+	977.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60067.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.0301385038819	7.27159944207612	7.1329748693029	7.31264818570661	7.68177336610084	7.37837501014322	0.481573410774098	0.0549657042132921	0.301250580699487
Merged-chr2-165887796-2	chr2	165887246	165888246	+	565.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2908.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.13534704793784	3.82460850764148	4.22699354258442	3.78990291393224	3.89350549786628	4.37438015894461	-0.0956460629192323	0.860310253051664	0.967467627140602
Merged-chr6-87810934-4	chr6	87810428	87811428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	851.0	NM_001039394	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	8.52585857128534	8.67914849059627	8.19928994895071	8.35288960590498	8.48566371175893	8.31866244027341	-0.13918029919954	0.545065836910595	0.858019423019685
Merged-chr4-129782430-4	chr4	129781912	129782912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38067.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.39472481818202	7.43980383910669	7.57548159576663	7.08250593650467	7.4302473931917	7.37350035915732	-0.239530817036341	0.324029025927375	0.717287790132387
Merged-chr14-65113973-5	chr14	65113404	65114404	+	814.213318	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-15798.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	4.96155639149043	5.09073222985204	5.27955092502188	5.26633971797596	5.32401067664426	5.07982544709459	0.263128070747335	0.471288746370255	0.819917078029108
Merged-chr10-127674312-2	chr10	127673812	127674812	+	750.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2753.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	3.82675028514652	3.68302768113878	3.70304552209842	3.81842003505063	4.00715460814263	4.07040433342058	0.715583130005158	0.170500398012654	0.547846214064376
Merged-chr15-13370900-1	chr15	13370400	13371400	+	823.0	f0_balb.idr	Intergenic	Intergenic	-197225.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.83555373937628	3.96694162011616	3.68233837270801	3.61315357090204	3.9428646677388	4.39288178066046	0.538183021777133	0.355332853778936	0.742280982557685
Merged-chr1-58802039-3	chr1	58801501	58802501	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	-501.0	NM_001080126	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	6.42070160322354	6.75087966919502	6.68745622189902	6.63872988758147	6.75617074624132	6.79211620019726	0.163193749783606	0.540207130981139	0.85632302227606
Merged-chr15-81178857-1	chr15	81178357	81179357	+	733.0	f1_c57bl6.idr	intron (NM_001082536, intron 1 of 13)	L2|LINE|L2	11900.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	2.75825522142419	3.24972051948781	2.98644624842294	2.69359976223937	2.60986389036356	2.87937619060884	-1.47850132445051	0.0565090765996095	0.306539360173434
Merged-chr18-11773051-1	chr18	11772551	11773551	+	676.0	f1_balb.idr	Intergenic	Intergenic	-66223.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	3.44610077509156	3.60725848028539	3.34376670642613	3.4772653234358	3.56278105724126	3.73668993192257	0.419071874341564	0.47474917859768	0.821664499521211
Merged-chr5-135458029-2	chr5	135457529	135458529	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 3 of 30)	intron (NM_146001, intron 3 of 30)	-63483.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	1.96447406247728	2.02201594779512	2.17254700356315	2.27703763375959	2.02368463862151	2.31333471058714	1.15407891819622	0.21518764499169	1
Merged-chr10-39959281-2	chr10	39958781	39959781	+	741.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113388, exon 4 of 4)	3' UTR (NM_001113388, exon 4 of 4)	872.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	5.8938357433476	6.0091906188173	5.83222986194564	5.87953218877784	6.04911178938255	6.20721336738911	0.222295521704315	0.460459836821965	0.814520074002194
Merged-chr16-21596613-4	chr16	21596109	21597109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98056.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.40073077813617	6.1970727292554	6.06434943526506	5.88455951997329	5.47419660404553	5.2733232716398	-1.15574622386859	0.000804362529099985	0.0152354649035628
Merged-chr7-127477983-4	chr7	127477458	127478458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6344.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	8.09646162606102	7.99729578253796	7.89589214836898	7.94883247746564	8.09668071192628	7.87942774023809	-0.0276574412128181	0.898977245782151	0.976432549466174
Merged-chr3-95634482-2	chr3	95633982	95634982	+	731.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9502.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.63001077463685	6.68169693916761	6.94994715108657	6.63889940493463	6.90180829647616	6.58398525791987	-0.0439554011457844	0.871996871311743	0.970261003150518
Merged-chr8-46824424-2	chr8	46823924	46824924	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	MERVL_2A-int|LTR|ERVL	84679.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.53053469939483	3.69242889626604	3.76365731827794	3.56554545007989	3.62655449988314	3.73300068680935	-0.0737936277918721	0.893487504721734	0.975237866709772
Merged-chr4-109280871-4	chr4	109280371	109281371	+	875.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 1 of 24)	CpG	596.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	6.50139312850524	6.2790116430819	6.68889766635636	6.43940192869024	5.79030399756685	6.54408511257058	-0.335491950844889	0.32218460710068	0.715595034771197
Merged-chr10-80398148-3	chr10	80397554	80398554	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306143, intron 1 of 6)	intron (NM_001306143, intron 1 of 6)	1477.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	4.58610915180065	4.49260889452085	4.19187658501167	4.60627866108222	4.62096885470816	4.31271122974111	0.21061834875828	0.645157065696255	0.90045202461189
Merged-chr8-120697805-4	chr8	120697316	120698316	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29496.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	4.76283861069981	4.31304935650888	5.038484376763	4.48937048313884	4.43155610912465	4.53277261119646	-0.592210401010349	0.202529312227751	0.59252027125208
Merged-chr2-13272548-3	chr2	13272027	13273027	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1112.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	4.01004757753715	4.58746623699558	4.14879876004808	4.64624272264422	4.48182724335595	4.57983811174221	0.722096631774298	0.138785980279686	0.497741642477138
Merged-chr17-24472608-2	chr17	24472108	24473108	+	806.599976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252463)	TTS (NM_001252463)	-1276.0	NM_175682	319259.0	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	3.27693328884776	3.32077179760407	3.76038294044403	3.38476743659989	3.78856898274219	3.57997608097289	0.484652345314409	0.439368311928513	0.801099099372157
Merged-chr11-49100153-2	chr11	49099653	49100653	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	13136.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	4.01031170392747	3.9898221368326	4.54080634314491	4.23051668055185	4.32990893536558	4.53034777367314	0.46069645334669	0.356885267993073	0.743526612563349
Merged-chr1-138321667-2	chr1	138321167	138322167	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47929.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	3.6161179882284	3.52498828677419	3.44505509225007	3.50084088079303	3.44622730272873	3.51647052738054	-0.177671424361147	0.755755685414791	0.939419158965935
Merged-chr1-84302992-4	chr1	84302502	84303502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18357.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.22970328128216	4.23631082349856	4.28140877361615	4.19944025919273	4.26413077190732	5.11878983647713	0.857235563531046	0.103690233009478	0.42934834114604
Merged-chr13-97203817-4	chr13	97203301	97204301	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5444.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	4.13683494625069	4.36697166459862	4.71734955422867	4.3008711953411	4.53932074360932	4.55805406251438	0.134397809132229	0.775811530093054	0.944803890171721
Merged-chr8-71462927-3	chr8	71462406	71463406	+	751.577759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022419, intron 1 of 4)	intron (NM_022419, intron 1 of 4)	751.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	3.67355739375812	3.32099611146202	3.58914715111726	3.57209963665038	3.61891202716125	3.55209547200876	0.17107868589383	0.768326468301511	0.942864224975033
Merged-chr7-126700252-1	chr7	126699752	126700752	+	1000.0	f1_c57bl6.idr	intron (NM_001301374, intron 10 of 10)	intron (NM_001301374, intron 10 of 10)	3968.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	2.95361128619295	2.9381601575551	3.17588471008253	2.9695223938595	2.93465900874015	3.19191799078828	0.0444676571577433	0.947733501589104	0.988008807662239
Merged-chr2-3713398-4	chr2	3712890	3713890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025626)	promoter-TSS (NM_025626)	-68.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	6.70419502612719	6.70155908578818	6.28763236731707	6.39641070191847	6.52371961490134	6.59236531695992	-0.138152191945812	0.623467271640491	0.891427938597819
Merged-chr16-65205060-1	chr16	65204560	65205560	+	597.0	f0_balb.idr	Intergenic	Intergenic	-99276.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	2.62015715943594	2.65723866459811	2.63873599984804	2.30245749810483	2.24132247440849	2.6512284504414	-1.48021246605834	0.0933602186850207	1
Merged-chr1-107584914-3	chr1	107584497	107585497	+	752.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5009.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	3.75054288482655	3.90612468836969	3.34844263946981	3.87939108472766	3.6599199379517	3.66402967536654	0.136360598942553	0.821255565351796	0.957942312428027
Merged-chr14-21101907-1	chr14	21101407	21102407	+	756.599976	f0_balb.idr	intron (NM_134079, intron 2 of 10)	intron (NM_134079, intron 2 of 10)	25755.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	3.45676845582276	3.41065403242472	3.30043834636535	3.09983020975813	3.04935720601117	3.19840931075663	-1.19759468041234	0.0593641051708832	0.315526570620176
Merged-chr6-83020938-1	chr6	83020438	83021438	+	598.0	f1_balb.idr	intron (NM_033079, intron 7 of 9)	ORR1F|LTR|ERVL-MaLR	12533.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	2.85903337552625	3.01265193141682	2.99314524890399	2.98983217611089	2.92337827018849	2.88344940046304	-0.104810925748553	0.878255559905562	0.971842464414451
Merged-chr9-114787327-4	chr9	114786779	114787779	+	819.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5286.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.59574775141197	4.85552727554601	5.09778204553859	5.9904940612188	6.29186452365548	6.02445949416365	2.45967763952921	9.73713355127788e-12	1.56713231824899e-09
Merged-chr11-82764984-3	chr11	82764482	82765482	+	884.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291242)	promoter-TSS (NM_001291242)	637.0	NM_025884	66983.0	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	6.72928468836766	6.94867503240826	6.96061467697249	7.00769705594911	6.86701147141635	6.87851694669388	0.059078217370795	0.813731251667066	0.955940138311315
Merged-chr8-35597256-4	chr8	35596784	35597784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-8264.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.30796924309052	5.30716597168872	5.2630267507293	5.24703402646722	5.13421472661919	5.23009224691384	-0.190156914881843	0.58146710992123	0.873298754324848
Merged-chr2-136916358-3	chr2	136915864	136916864	+	870.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	17013.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	3.16497638570874	3.08650051183998	2.87396748290092	3.32649916048405	3.43384515538137	3.20069919567786	1.18720215441635	0.0845049869803284	0.384882771356942
Merged-chr1-162705391-2	chr1	162704891	162705891	+	609.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081290, exon 16 of 35)	exon (NM_001081290, exon 16 of 35)	35165.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	3.64913345808817	3.36056820977717	3.77368324760145	3.7233469374983	3.63413441943949	3.84252959667643	0.45116907064433	0.429380880718009	0.795682190695026
Merged-chr6-57582577-4	chr6	57582073	57583073	+	887.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025992, intron 1 of 22)	MER57E1|LTR|ERV1	1581.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	6.00238297042801	6.02921042238902	5.55732758366201	6.27231343115313	6.505685342373	6.05769210670872	0.69185609470459	0.0343757050228307	0.227010608217436
Merged-chr13-91223989-4	chr13	91223486	91224486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	1.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	8.75887625941657	9.03324315624986	8.30756591951349	8.68174302507028	9.01683829523102	8.29021572475948	-0.0496920124811639	0.86426926990382	0.968269312109804
Merged-chr11-69045618-4	chr11	69045115	69046115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	-22.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.67328457201622	5.7339474236706	5.63869230986357	6.1309532983788	6.2840638990711	6.00669063765014	0.832787366359059	0.00566054746960956	0.0668528883319275
Merged-chr10-52376688-3	chr10	52376185	52377185	+	857.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	5439.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	3.01719590820895	3.29061719672904	3.35008721524553	3.3059507153566	3.32418731777983	3.19395193120542	0.224503903212856	0.726181629957964	0.929753323116059
Merged-chr19-43920029-2	chr19	43919529	43920529	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	RMER6B|LTR|ERVK	20169.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	4.48310864663606	4.59822627678929	4.59087474588711	4.24899001768933	4.06026702476568	4.13011795656567	-1.09399755834722	0.015593449208848	0.136391670119626
Merged-chr12-34674407-4	chr12	34673909	34674909	+	812.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	B4|SINE|B4	-145520.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.11186730219871	4.29013633372237	4.45109759636873	4.56458181348094	4.54056456149648	4.67567692700072	0.786811872716635	0.0754998743654503	0.361752804931648
Merged-chr18-49834155-4	chr18	49833655	49834655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1158.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	7.14489126539898	7.23347520541345	6.65875497339095	6.86871370677912	7.25137454639366	6.47245390042706	-0.193340716605022	0.550686728103165	0.860724721466829
Merged-chr5-36484467-4	chr5	36483950	36484950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170454)	promoter-TSS (NM_001170454)	-138.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	3.61225831714038	3.56491999979196	3.52301374634105	3.26320363637116	3.41838959255832	3.42890851267275	-0.736018213035822	0.209560309448131	0.601175460388211
Merged-chr16-15914449-3	chr16	15913926	15914926	+	887.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 11 of 18)	intron (NM_001355731, intron 11 of 18)	27140.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	3.32073924190857	3.07896627791263	3.32488921137423	3.38889560327446	3.26886833783326	3.75153000773213	0.906255177832287	0.157983662521098	0.529527616804567
Merged-chr12-78206283-5	chr12	78205739	78206739	+	930.542847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20416.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.25010335658621	4.5246665359685	4.35511526485231	4.67238283227938	4.69837237632471	4.46886341384871	0.592627322844314	0.175610059753363	0.555616633786755
Merged-chr3-103856097-2	chr3	103855587	103856587	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-3708.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	2.99347500006207	3.0198079582183	2.96582558925389	3.61190712309165	3.18019496103157	3.61338933655849	2.05206510878374	0.00295509967587985	0.0416406323167842
Merged-chr14-55584789-2	chr14	55584289	55585289	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033146, intron 1 of 4)	intron (NM_033146, intron 1 of 4)	465.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	4.48698370678978	4.51795950423545	4.86669935655657	4.75516141607913	4.45828021285471	4.96420986252315	0.249667779280919	0.57309333294133	0.869947175774374
Merged-chr4-63205721-4	chr4	63205207	63206207	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9705.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	4.38026900845685	4.39146830314141	4.22615505757538	4.40093047039413	4.63397273484253	4.64094721087402	0.561880119523423	0.201492054184481	0.591011009643598
Merged-chr12-110846126-2	chr12	110845626	110846626	+	817.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4153.0	NM_001199785	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	5.94401841123869	5.86878493953774	5.98745479404283	6.21576773234547	6.02971467788521	6.25945075812923	0.403008039375803	0.16650445940378	0.541826478610469
Merged-chr16-32815006-1	chr16	32814506	32815506	+	583.0	f1_balb.idr	Intergenic	Intergenic	-4560.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	4.50297665968633	4.27295994888884	4.16690232750776	4.16251112433373	4.04142686451016	4.1396107448979	-0.597253851131537	0.207154743843698	0.597920729067479
Merged-chr16-30944290-4	chr16	30943792	30944792	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137140.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.20344658948999	5.67755985085916	5.55280131021411	5.63095582018562	5.82818123895771	5.93346657325535	-0.09559525820912	0.78684975632804	0.948652407043926
Merged-chr9-83574872-2	chr9	83574377	83575377	+	662.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	MTC|LTR|ERVL-MaLR	26539.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.33977161064426	5.61257132008468	5.18166586011054	4.83180224455917	4.97831037941899	4.66100089293098	-1.15945825199284	0.00325075548217701	0.0447681003245589
Merged-chr10-118041256-1	chr10	118040756	118041756	+	792.5	f0_balb.idr	Intergenic	RMER15-int|LTR|ERVL	-100531.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.53237196684783	5.63995051555778	5.69171089477837	3.95905011683371	3.90144841901761	4.24489353732458	-4.16481809451226	2.72644306245874e-16	9.61279128563843e-14
Merged-chr7-105641392-2	chr7	105640914	105641914	+	838.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	969.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	6.40016739759388	6.80163328248653	6.82191591144702	6.58442454566651	6.67097138187327	6.56563057427975	-0.117205725152019	0.672232547025898	0.910756996322765
Merged-chr10-21670391-4	chr10	21669891	21670891	+	890.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20454.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	5.30513730179296	5.27469672815253	5.51194636144022	5.35739992050673	5.53390244499225	5.33881387729359	0.120189985894374	0.725427898553621	0.929698613727862
Merged-chr12-8659918-4	chr12	8659420	8660420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14214.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	4.63630839182682	4.35160112890053	4.38815400875987	4.28512311300025	4.37773476623872	4.411912291102	-0.283761761011085	0.523904116083492	0.848428438699863
Merged-chr9-109039192-4	chr9	109038685	109039685	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025858, intron 1 of 5)	intron (NM_025858, intron 1 of 5)	618.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	6.009441029256	5.94395224495755	5.76987295514877	5.92278301837305	5.92723974712061	5.83183400988536	-0.03743738945684	0.900652343457822	0.976900442352196
Merged-chr9-61914558-4	chr9	61914058	61915058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-48.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	7.94553807728383	8.3549915371427	7.84167276573317	7.99359078174576	8.13798414425146	7.99358392167627	-0.0404432638905679	0.868497330095017	0.969652123135977
Merged-chr5-115158836-4	chr5	115158379	115159379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-703.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	8.00045276592077	8.179242748079	7.67399883005644	7.64070722590918	8.03481464677852	7.39639325877114	-0.349916861339356	0.209427196496809	0.60098798725147
Merged-chr1-24471421-4	chr1	24470935	24471935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	116002.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	5.63588477108444	5.51630722569438	5.36978622620929	5.2889383045292	5.56148559474124	5.66198631114894	-0.0157132750816292	0.963314713519099	0.991095051079597
Merged-chr7-118594601-2	chr7	118594101	118595101	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331203, intron 1 of 2)	B4A|SINE|B4	2155.0	NM_001331203	381914.0	Mm.291232	NM_001331201	ENSMUSG00000109284	B230311B06Rik	Gm1695	RIKEN cDNA B230311B06 gene	protein-coding	2.04949842244944	2.14061821768897	2.04343223048093	2.3563512510015	2.30410051295801	2.45529991146819	2.16816069946585	0.0224273302336329	1
Merged-chr4-101264434-2	chr4	101263934	101264934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	848.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	7.01119064543868	7.08793745977877	6.76355526386499	6.86821071902957	6.724297878929	7.00987095114252	-0.161217441107889	0.53517372083063	0.85341621121369
Merged-chr17-28181409-2	chr17	28180909	28181909	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3991.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	4.16340199512662	4.13273992287559	4.12503543461533	3.69789185585164	3.78438045576913	3.85436079276237	-1.11934396118397	0.0268664466191493	0.195189320726986
Merged-chr16-90385861-3	chr16	90385361	90386361	+	939.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	-536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.61326584139827	3.17566182204304	3.31162423251709	3.39476284584812	2.95608685751496	3.14860104712849	-0.8603001787482	0.214336512490252	0.607456645674519
Merged-chr8-105566932-3	chr8	105566419	105567419	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-855.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	4.55604808009409	4.29854925010852	4.68283006399132	4.26890164412684	4.19455743306017	4.30335022051209	-0.682985829094927	0.133689428946055	0.488926137304149
Merged-chr17-20944365-4	chr17	20943860	20944860	+	949.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1094.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	5.68940790452454	5.61781098809931	5.25806398249274	5.7013756390304	5.40142911127112	5.21778835014717	-0.15991005189132	0.660519665519993	0.905981809862142
Merged-chr13-51395916-4	chr13	51395433	51396433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12685.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.04281485269526	4.96116910326672	4.96309948484549	4.62768317251474	4.48174933008225	4.60629310500593	-0.977146447404411	0.0135910689995721	0.124300469258782
Merged-chr3-88177278-3	chr3	88176779	88177779	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	506.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	8.29221948248023	8.14631723520501	7.82939259971308	8.16087876658165	8.28485996430487	7.79775735155021	-0.00694749319163559	0.978223611523537	0.995070777384379
Merged-chr19-3325526-4	chr19	3325024	3326024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	CpG	2223.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	7.34617286800472	7.775022854043	7.35301075905997	7.23651751408465	7.29811781557042	7.35495804321091	-0.321801573884196	0.202864327851345	0.592772302593993
Merged-chr8-67950940-4	chr8	67950456	67951456	+	707.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	23618.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	4.67113528599777	4.98868572870278	5.02958071006963	4.76674934264552	4.59807099713085	4.653265939533	-0.523666824612879	0.200086929196072	0.588889204172492
Merged-chr11-86750181-4	chr11	86749634	86750634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	7433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	7.22027550166009	6.97056227554318	6.90032267099542	7.10476031961216	7.38148159366333	7.0972350970524	0.248836671630863	0.33348634400819	0.724434307441351
Merged-chr14-79533472-4	chr14	79532966	79533966	+	946.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17792.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	7.27727030328	7.21053559809566	6.98014426298077	7.18722457585885	7.6475513442946	7.43801023417762	0.406967978217869	0.117001974481121	0.4567645612395
Merged-chr2-120652151-5	chr2	120651690	120652690	+	971.3599849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	42595.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	6.89632398140094	6.78829609313871	6.60299447745075	8.00144718875829	8.19294052447084	7.51431481942227	1.72084437747429	6.07497713719205e-10	6.8773700358024e-08
Merged-chr11-120629069-2	chr11	120628569	120629569	+	843.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010756, exon 3 of 3)	3' UTR (NM_010756, exon 3 of 3)	-4067.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	5.5037376130251	5.4845097673459	5.63990410473635	5.58420703202935	5.81578006128422	5.47464499413131	0.199355182134438	0.54608234154357	0.85849711034619
Merged-chr12-110886003-4	chr12	110885554	110886554	+	921.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026048, intron 1 of 4)	intron (NM_026048, intron 1 of 4)	3091.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	4.16589085627768	3.77174351573024	3.88609333589255	3.81365272437316	3.71184836282092	4.39358127387433	0.138835966798937	0.80848026515617	0.954683711776353
Merged-chr12-102713361-3	chr12	102712861	102713861	+	901.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8492.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.73139767978059	4.67310924437293	5.16232413182844	4.95489304579224	4.60713197622485	5.28314821167501	0.224712991905612	0.613077676141439	0.886996927186968
Merged-chr10-93483542-1	chr10	93483042	93484042	+	544.0	f1_c57bl6.idr	intron (NM_008517, intron 18 of 18)	intron (NM_008517, intron 18 of 18)	-5226.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	3.06970711328637	3.38008904841217	2.97158583232848	3.24402889140889	3.41122421983638	3.23035226890212	0.585439936592223	0.389980202257043	0.769401696657453
Merged-chr16-58521416-2	chr16	58520916	58521916	+	747.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	2010.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.09072665921383	3.99012775169156	4.09125630051891	3.90333379970699	3.85715772050123	3.91974506624507	-0.502539646259621	0.309418112584584	0.705003874352637
Merged-chr8-80314988-4	chr8	80314493	80315493	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179052.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	5.11589958110828	5.22906230970371	5.27329549321473	5.28872808767983	5.01918667993507	5.33646050431862	0.0150825542145231	0.966703482452412	0.992349609766636
Merged-chr4-147523551-2	chr4	147523051	147524051	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-29726.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.03600833624226	3.00913104307312	2.7588760348336	2.87901784787585	2.8396885196219	3.30246645427468	0.346357343357344	0.640341605515572	0.898462882345577
Merged-chr10-121583207-4	chr10	121582709	121583709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	3585.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.02088317272321	4.71742928752279	4.57954564781435	4.92370025335605	4.91279468577095	4.928809711378	0.277717425175588	0.492626779027658	0.831177181177099
Merged-chr15-98507090-2	chr15	98506590	98507590	+	935.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	9616.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	5.8959740185952	5.93933579069842	5.74131752657768	5.44442433027113	5.88133249763661	5.82873588413814	-0.23549130017385	0.471130860275851	0.819888573544447
Merged-chr19-5640264-3	chr19	5639733	5640733	+	728.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 5 of 10)	intron (NM_009045, intron 5 of 10)	2743.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.47789367610588	3.47298855154395	3.80387270091372	3.24272839730688	3.84347958776892	3.62481386129871	0.0354097250624008	0.955328267994009	0.989763164889919
Merged-chr7-64404152-3	chr7	64403653	64404653	+	798.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	11531.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	3.23348157389312	3.50152470760349	3.39227236565772	3.08618343599486	3.13829090486908	3.05599187085569	-1.19792449863312	0.0654467028747634	0.333661494565487
Merged-chr7-5062812-1	chr7	5062312	5063312	+	1000.0	f0_c57.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	669.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	8.10239057096805	8.35368639539476	8.04516852815411	8.18718646659891	8.30328473642165	8.06454626085589	0.0202113829264251	0.927995130971116	0.983759092435667
Merged-chr12-16828699-4	chr12	16828198	16829198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17733.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	3.26409171384781	3.17610390311821	3.11408885496674	3.019241978034	2.78351970364674	3.18639239172764	-0.855214528272677	0.218523199872338	0.61273880821229
Merged-chr7-99043540-4	chr7	99043042	99044042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	97602.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.07106819247671	7.16672507763489	6.66879903585553	6.88270737467345	7.08541658856763	6.3827170316179	-0.251867668901372	0.418857349916561	0.788755230826602
Merged-chr5-123077237-2	chr5	123076737	123077737	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	962.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	4.74570765496173	4.48134873067184	4.53823423556975	4.7067744741685	4.06185494161857	4.52167423751216	-0.349984032488613	0.46548979575191	0.817020164214671
Merged-chr7-110260961-2	chr7	110260472	110261472	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	L1_Mus4|LINE|L1	39269.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.06446162605139	4.0168122307017	3.92659328892914	3.67456202868899	3.47699181974134	3.68641952950727	-1.3231399068412	0.014108210764115	0.127490421998706
Merged-chr6-115838491-4	chr6	115837990	115838990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110506)	promoter-TSS (NM_001110506)	-78.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	4.56198118155234	4.60936582440582	4.90980884074604	4.51501431021214	4.39547878874714	4.52805092046555	-0.52763581397304	0.218022187310601	0.612156710919465
Merged-chr13-23562033-2	chr13	23561533	23562533	+	741.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178205, exon 1 of 1)	exon (NM_178205, exon 1 of 1)	332.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	6.69721339639334	6.42993722669924	5.96958795394776	6.30606822796863	6.47247010609592	6.12938798961912	-0.154625301380639	0.634276720365238	0.896306748317281
Merged-chr5-140347403-2	chr5	140346903	140347903	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	15447.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	2.47411584240762	2.40052705613401	2.63042137202754	2.45092330118878	2.25768339971913	2.8207818787128	0.144359761442679	0.866263371785024	1
Merged-chr11-54439541-3	chr11	54439092	54440092	+	889.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	1413.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	7.92293957550408	8.17316006921213	7.29093284253039	7.86227333138068	8.23472048064101	7.25783545250449	-8.66803630540028e-05	0.999871142168941	0.999986127056153
Merged-chr10-127645380-1	chr10	127644880	127645880	+	811.0	f1_balb.idr	intron (NM_009284, intron 1 of 21)	RLTR21|LTR|ERVK	2394.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	3.34730785172254	2.99054125495906	3.70151845920706	3.76065120977207	3.41664890675808	3.40296080768498	0.584579717488527	0.396742813477726	0.773734965167923
Merged-chr8-88667531-1	chr8	88667031	88668031	+	634.333313	f1_balb.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.12055084950185	6.13236127888993	6.63154844783513	6.45930859830927	6.59148005178494	6.79373316725084	0.50851270074806	0.0930143998095471	0.406374548333771
Merged-chr14-50898186-4	chr14	50897688	50898688	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4933.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.23352207262627	3.94556920531709	4.35869462861461	4.14205689441395	4.22932021283729	4.50466946419109	0.301849194458403	0.53652450002106	0.854054380887518
Merged-chr14-19768870-4	chr14	19768375	19769375	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008695, exon 4 of 21)	exon (NM_008695, exon 4 of 21)	17618.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.44200434006088	4.97846806834941	4.94893746429035	5.10370020219511	4.83712973716322	5.01482639533335	-0.351580550858124	0.379107200150777	0.761621772253655
Merged-chr3-103967993-4	chr3	103967485	103968485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163467)	promoter-TSS (NM_001163467)	-125.0	NM_001163467	18685.0	Mm.385178	NM_013629	ENSMUSG00000058388	Phtf1	AU041898|AW049785|Phft|Phtf	putative homeodomain transcription factor 1	protein-coding	7.21465218992241	7.53448553644652	7.47704250468472	7.34620532528905	7.51513010581724	7.46326635505881	0.0437016110597956	0.855009481753021	0.966042590310271
Merged-chr2-150311424-4	chr2	150310909	150311909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027017, intron 3 of 3)	intron (NM_027017, intron 3 of 3)	51356.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	6.21322133955593	6.13242023296794	6.02153969940933	6.43778419805256	6.70060799174751	5.8784517831471	0.448891982021281	0.178339315126248	0.559402033136986
Merged-chr13-67871054-1	chr13	67870554	67871554	+	577.0	f0_c57.idr	Intergenic	Intergenic	7728.0	NM_001001185	408058.0	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	2.12730417507801	2.10915675680904	2.25444613480504	2.58419050088759	2.51479578005149	2.71762336787095	3.60125608558646	0.000764729991868863	1
Merged-chr7-90034646-2	chr7	90034146	90035146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	B2_Mm2|SINE|B2	5487.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.87409906415822	7.86247572979858	7.56627865846608	7.42680500318696	7.88775186514793	7.19013186139586	-0.333946948560025	0.23296703210867	0.629348326517137
Merged-chr7-45830860-4	chr7	45830363	45831363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153419)	promoter-TSS (NM_153419)	-74.0	NM_153419	101612.0	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	4.91509392728477	5.07210009870252	5.13382558298252	5.1977169703502	5.027018876247	5.09754122395688	0.144028237390176	0.69463265951432	0.919217788511748
Merged-chr13-91464767-1	chr13	91464267	91465267	+	660.0	f0_balb.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	3670.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.10066443545941	2.82283033600128	3.13318111080377	2.68583757666258	3.01371284307569	2.72083528041937	-0.966924919089066	0.210928355407766	0.603272241860952
Merged-chr3-152406169-4	chr3	152405670	152406670	+	934.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	9486.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.83055834940197	6.12533588243567	6.07611896266023	5.96156072323107	5.71533575702399	6.02777438245801	-0.204213294168669	0.511393679560295	0.841398479205367
Merged-chr5-115158350-4	chr5	115157890	115158890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-214.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	8.46486200089681	8.5004756605808	8.03629135495517	8.12260286825481	8.34455979586679	7.84046710758907	-0.322088933314247	0.209164021452311	0.600512916403162
Merged-chr19-29521204-4	chr19	29520697	29521697	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015567, intron 1 of 3)	intron (NR_015567, intron 1 of 3)	790.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.95965564870086	6.97709410194127	6.94214095394899	7.00291907013574	6.87525982778828	6.55215931372905	-0.195626625886693	0.454943275408464	0.810666797758316
Merged-chr1-182375351-3	chr1	182374859	182375859	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33753.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	3.20293850090207	2.76406307785386	3.13350090019917	3.16627648977017	3.04840539437761	3.37045097471966	0.647564080006052	0.362120757243418	0.747675323428227
Merged-chr4-141724867-4	chr4	141724358	141725358	+	889.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	5.05228545175481	5.03353526859806	5.15340419652934	5.05778609005558	4.73198548527042	5.27825730182107	-0.106225953882098	0.787111181234569	0.948693859994902
Merged-chr9-116166422-4	chr9	116165908	116166908	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	8955.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.70672164118394	5.85977514128946	6.00972075149135	5.30568613902336	5.38581198477096	5.56293566736664	-0.823692405181924	0.0119952764828278	0.114238636326329
Merged-chr5-33997288-3	chr5	33996788	33997788	+	658.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001985, intron 1 of 2)	CpG	1304.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	2.56952530159733	2.33719371096528	2.71384899382423	2.15175954652171	2.13148841877092	2.14832765849518	-3.16278455508451	0.00276236485786133	1
Merged-chr6-29526139-4	chr6	29525633	29526633	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-492.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	7.77069698140569	7.7180871140191	7.94239556906245	7.86416379863085	7.98130370704846	7.79178376896704	0.109702840592929	0.619374016803311	0.889749463061948
Merged-chr4-129020523-6	chr4	129019944	129020944	+	880.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27220.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	3.04505147133439	2.96381678300005	2.83942428026881	3.10288035444963	2.79541039141434	3.15480809149329	0.308910957753023	0.663374027889022	0.907167603449963
Merged-chr3-98062660-2	chr3	98062160	98063160	+	854.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	(GA)n|Simple_repeat|Simple_repeat	49122.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.85626757834118	3.97527111516489	4.24976586880492	4.06628363781554	3.95876963958343	4.00126359506644	-0.0573000874500816	0.909444806224389	0.979485405217828
Merged-chr4-101651443-2	chr4	101650854	101651854	+	729.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	3571.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.78230588995572	6.14131613906995	6.13190794183129	5.97988202488153	6.14840200960246	6.01747305339793	0.050846829741788	0.867681481057429	0.969418741628431
Merged-chr14-31172947-4	chr14	31172436	31173436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 19 of 20)	intron (NM_022656, intron 19 of 20)	-4295.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	5.60707897990427	5.54121606444634	5.52658966845917	5.49256240603687	5.35484981311138	5.28196098643475	-0.341941448703908	0.300499846969768	0.697311691851564
Merged-chr11-107012390-4	chr11	107011883	107012883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12858.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	8.50123265766283	8.56262161979974	8.49701249148221	8.47152563069108	8.94928210912179	8.34387164581208	0.142682252807307	0.560217340321041	0.865187357612257
Merged-chr10-57734130-1	chr10	57733630	57734630	+	736.0	f0_balb.idr	intron (NM_001039050, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	-50793.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	3.87615924135486	3.75629417152356	3.92455149670441	3.46086248575605	3.53996996744242	3.53325737140987	-1.16963538447827	0.0353729171470662	0.23089277765921
Merged-chr14-21814044-4	chr14	21813552	21814552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-17509.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	5.79456890036212	5.27846946035441	5.39175478001503	6.20207255347771	5.97379348536263	5.80603743970691	0.888052605421029	0.0111326034948707	0.108443183282744
Merged-chr11-53809679-4	chr11	53809217	53810217	+	723.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	LTR33|LTR|ERVL	39244.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.67842481795504	4.70590444435075	5.1454091431415	5.33171027611852	5.28092680906616	5.07625696390493	0.839811313834648	0.0326413069077623	0.219949142630861
Merged-chr2-25626609-1	chr2	25626109	25627109	+	582.0	f0_balb.idr	intron (NM_007995, intron 5 of 9)	intron (NM_007995, intron 5 of 9)	1365.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	5.74800588321323	5.63790176907557	6.41626829076733	6.23560632233654	5.75724540102628	5.41790142415894	-0.214117180913817	0.599135133380153	0.880924908462167
Merged-chr5-45451205-2	chr5	45450705	45451705	+	858.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-976.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	3.37876800953625	3.50993494181644	3.80433964970863	3.38789723007388	3.63368742786587	3.40948413388782	-0.290033868425684	0.632062781286456	0.895435008062156
Merged-chr16-92039123-3	chr16	92038549	92039549	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-19273.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	6.48893886615144	6.65746841092207	6.41906327441821	6.52739606434825	6.75802486711601	6.25512981055861	0.0214395830119566	0.940868626028428	0.986888338850358
Merged-chr15-86214400-4	chr15	86213910	86214910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145476)	promoter-TSS (NM_145476)	-49.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	8.78523999190507	8.84266311793732	8.60614152038457	8.78912379643806	8.97649176525948	8.4106176731251	0.00351063327695511	0.988211456598376	0.99731652667245
Merged-chr9-89198910-1	chr9	89198410	89199410	+	1000.0	f0_balb.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-363.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	6.46976179131792	6.22651747506099	5.68701705660852	6.62050514985358	6.65469364668046	5.6235266402406	0.349437001461797	0.604643448787041	0.88314896167691
Merged-chr5-140206043-4	chr5	140205548	140206548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-31130.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	5.41704092423592	5.5581189292644	5.61349513636436	5.08514041665521	4.93157787932356	5.10911578966407	-0.992629022624499	0.00461624370717221	0.0579436425382992
Merged-chr6-97321219-1	chr6	97320719	97321719	+	682.0	f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-68439.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.07088248221919	3.04876872550416	3.11956696485968	2.97813939797043	3.01201100247234	3.35420470188858	0.174422362410483	0.793977521833698	0.950531747588938
Merged-chr14-25768003-3	chr14	25767496	25768496	+	768.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	860.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.28933640424364	5.27560753996391	5.25770074326306	5.12645316160453	4.88493293936346	5.25859722010089	-0.39040359697875	0.283585061514396	0.681376161050487
Merged-chr8-26696889-3	chr8	26696353	26697353	+	899.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127570.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.38021702593334	6.59372627517634	6.77783103618284	6.97948993607095	7.49367138852141	7.23021462793166	1.03020428404963	0.000243432324774407	0.00586946301936506
Merged-chr3-88081392-2	chr3	88080892	88081892	+	746.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-659.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	3.69989375633729	3.48640746592669	3.64328502118264	3.57461032429404	3.38835426331869	3.55470543740613	-0.388062864117639	0.497309732515755	0.833537753266678
Merged-chr4-44182592-4	chr4	44182082	44183082	+	879.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14299.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	2.90138020715163	2.69390847781328	2.93778026650516	2.93683593400541	2.71000810890456	3.0676132558989	0.300618554875916	0.679711708272278	0.914024131867986
Merged-chr1-87112043-4	chr1	87111526	87112526	+	957.710693	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10420.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	4.09496000249075	4.35975993752793	3.87643331786347	3.81739606988357	3.93844290056286	3.99875703784973	-0.638091648627693	0.218518048134753	0.61273880821229
Merged-chr15-88145795-1	chr15	88145295	88146295	+	551.0	f0_balb.idr	Intergenic	Intergenic	-169079.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	4.04787967585033	4.24963189450209	4.36551930632023	3.14784848960866	3.02184899245469	3.48693071794553	-4.55905300590905	8.43648065770329e-08	6.14695869147264e-06
Merged-chr17-73944541-2	chr17	73944041	73945041	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5655.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.17948186170931	6.10727680411237	5.85743897919028	6.26620421722268	6.15314542777797	6.30060010298279	0.289061100816433	0.321675967492292	0.715095215150913
Merged-chr12-54986377-4	chr12	54985879	54986879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013815)	promoter-TSS (NM_013815)	-43.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	7.61440913042484	7.44749045474452	7.49042784448161	7.70097597753007	7.36173473792322	7.52730741912556	0.0215325066640927	0.927527183023188	0.983584626679457
Merged-chr12-32292578-3	chr12	32292081	32293081	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-83932.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	7.87730551957786	8.28506844480412	8.00122797082666	8.04671337484551	8.40538126592845	8.01227101559919	0.147424461497349	0.551900380647485	0.861546661145201
Merged-chr2-147013880-3	chr2	147013361	147014361	+	998.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	862.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	7.44502438085675	7.80509813558109	7.61974350198093	7.33722476388071	7.67206226642479	7.3844205274444	-0.224522507647712	0.369557478834174	0.754227853743163
Merged-chr11-99164648-4	chr11	99164155	99165155	+	848.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9578.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.98137593631286	6.45267205246052	6.58440700691233	7.0487454557019	7.11766776866042	6.84022611831049	0.485562605307399	0.0878724118558241	0.39333410327072
Merged-chr11-65806590-4	chr11	65806084	65807084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-591.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	7.70561694764209	8.17345306830406	7.81625861719404	7.81491782218815	8.07201123956722	7.58056477655289	-0.104571562421836	0.69127747103227	0.918256515929559
Merged-chr1-134791213-4	chr1	134790704	134791704	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	12517.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	4.63091941114807	4.41261883480496	4.47966645770709	4.29834497077108	4.14271250281655	4.93125776494405	-0.0411854681519166	0.934663737114852	0.985727536128156
Merged-chr1-43464263-2	chr1	43463763	43464763	+	882.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	MIRb|SINE|MIR	18512.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.38192443093272	3.27013741352396	3.24127505803854	3.56402377944435	3.34795391696224	3.58915010554891	0.764889431780231	0.205900515608565	0.59649641747641
Merged-chr12-108170664-4	chr12	108170169	108171169	+	852.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	8615.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	3.11455630888298	3.00487021670726	3.13328139220586	2.9457177705906	3.22773858679362	3.26072441674028	0.298844138018695	0.652094426819852	0.902896807825606
Merged-chr16-91860096-2	chr16	91859596	91860596	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 24 of 28)	intron (NM_001110275, intron 24 of 28)	71534.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.37024845516219	4.67882612668213	4.85536802387062	4.6734076855218	4.7180222541793	4.98720163356093	0.352389779022487	0.413326361355523	0.784932929682752
Merged-chr19-55556422-4	chr19	55555945	55556945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	145759.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.62795308591384	5.73402927436791	5.57457714208399	5.50655428557002	5.75551559214802	5.49089700510313	-0.0938362017055619	0.773673907419866	0.944173663294033
Merged-chr2-24936154-2	chr2	24935654	24936654	+	731.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-873.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	3.43663588882748	3.17769492646935	3.25549734418079	3.10315682059379	3.18104657644853	3.02650276140187	-0.786315765381685	0.22933414648822	0.624799321834659
Merged-chr17-5576012-6	chr17	5575422	5576422	+	954.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	L2a|LINE|L2	83322.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.18016324374287	7.20970568158804	7.36246754317856	6.94077008669001	6.93491214394952	7.08648615485942	-0.399225621188994	0.0951214475809689	0.411148363215922
Merged-chr7-55961676-4	chr7	55961169	55962169	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015495)	promoter-TSS (NR_015495)	824.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.6511125412297	8.1778003835343	7.66238033697504	7.96300717637186	8.30455248651953	7.98149919871101	0.33385533338342	0.207753157683703	0.598674450027552
Merged-chr4-132797710-2	chr4	132797210	132798210	+	668.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1346.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.36856674703103	6.14643784683703	6.43395326405554	6.55370775499986	6.70235243523547	6.32076599870917	0.373605873789265	0.190153586715425	0.576299386028668
Merged-chr11-75453527-2	chr11	75453027	75454027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	1190.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	3.48438158044308	3.48363550694151	3.56011568654452	3.10614869701225	3.31580731508854	2.98720774887228	-1.43460076255138	0.035154307900597	0.230081195714823
Merged-chr7-127876201-4	chr7	127875692	127876692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-550.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	7.3972547629774	7.71774594731632	7.87881020349455	7.44645861980832	7.43944732774705	7.55356856201919	-0.28658275918842	0.243825030787809	0.640958811221234
Merged-chr18-62044329-4	chr18	62043860	62044860	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	91285.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.80011041874722	5.64582894448364	6.08780633300976	5.78724247736925	5.59810388053459	5.91016809082491	-0.151206530446827	0.64519603303525	0.900459345953675
Merged-chr18-38419703-2	chr18	38419211	38420211	+	787.0	f0_balb.idr|f0_c57.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	804.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	8.31736791107398	8.58311648378522	8.16230104067485	8.35243742458468	8.60086804196172	8.23813961886579	0.0558348527847639	0.814037547551595	0.955998930964166
Merged-chr16-4628076-2	chr16	4627576	4628576	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 26 of 27)	intron (NM_030205, intron 26 of 27)	-3130.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	3.64358325092479	3.83171128828752	4.16162026218707	3.64427131555617	3.58248658936798	4.10246589911652	-0.31610615858458	0.587145082472081	0.875769926947203
Merged-chr9-47581697-3	chr9	47581194	47582194	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	51342.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.09567207845315	4.92047480766736	4.88707059905591	4.3926436095659	4.03487339856504	4.56717810481327	-1.56095383206232	0.000512122794651335	0.0106852340765668
Merged-chr2-174328621-2	chr2	174328121	174329121	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310083, exon 2 of 13)	5' UTR (NM_001310083, exon 2 of 13)	707.0	NR_003258	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	4.96258833239353	4.73060636715559	4.843057691376	5.06240607281785	5.08161500954565	4.94653924317339	0.408516083309696	0.282549836219868	0.680451612659422
Merged-chr13-52024572-2	chr13	52024072	52025072	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72169.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.46905141447248	4.45629137409704	4.77378503670857	4.56442058369476	4.41300319959736	4.49017608120782	-0.188025976505708	0.664131640304975	0.90751097049737
Merged-chr7-141122749-2	chr7	141122249	141123249	+	810.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-4943.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	4.29100229521987	4.11914731296575	4.58983344973234	4.66863174718361	4.36056307971527	4.41074301607285	0.385043347402391	0.409638122185005	0.782996589845341
Merged-chr18-8677672-4	chr18	8677180	8678180	+	968.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-535176.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	4.6926368212971	4.9369699566403	4.76249138854167	5.36175775011185	5.67883386925858	5.53677142156186	1.50086212796577	5.77209407761712e-05	0.00177554308321762
Merged-chr16-38458923-4	chr16	38458408	38459408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-25.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	6.8997943357089	7.05818390978983	6.988775805641	7.17209436040757	7.2733879456927	6.88937968203065	0.223699179872608	0.377255538907847	0.759641818876754
Merged-chr2-73530048-3	chr2	73529535	73530535	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	-548.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.17888376772789	6.54326093578866	6.5350946098607	6.48360133624679	6.25272860586761	6.25936890649135	-0.147541522072683	0.610952128535384	0.885849400663435
Merged-chr1-172525325-4	chr1	172524827	172525827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	4197.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	5.17770211552357	4.90989027204745	4.66692464983424	5.27246296579039	5.24712891407693	5.127854007638	0.569483131633047	0.145600037162129	0.508780778270888
Merged-chr5-140642261-4	chr5	140641746	140642746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6785.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	7.69826745690491	7.73059393637473	7.56318481907569	7.82630905590698	7.74532142530767	7.18701832883209	-0.0612302036307868	0.817109725333784	0.956754861188725
Merged-chr13-36700067-4	chr13	36699551	36700551	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	34426.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.05545766186654	3.15502035366894	3.14519478859534	3.30811522512424	3.32924339892229	3.21746119609457	0.723766332637075	0.250117575989662	0.647307401971844
Merged-chr5-115281367-1	chr5	115280867	115281867	+	779.0	f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	URR1B|DNA|hAT-Charlie	1665.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	4.89211983593439	4.58150498803034	4.47216866757992	4.48592133268352	4.38619791987262	4.40541749801163	-0.598672290235432	0.172211634358978	0.550791269670275
Merged-chr1-177489997-4	chr1	177489526	177490526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44205.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	4.20252498429991	4.25305551251404	4.40731501501903	4.49661118097307	4.48791777510396	4.388036564056	0.465179101891828	0.291560599417214	0.689166486004505
Merged-chr1-135753111-4	chr1	135752617	135753617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_153810)	TTS (NR_153810)	-12968.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	3.31419236867436	3.04331348047751	3.02237326114401	3.00285552523269	3.10677760803064	3.2700499447448	-0.0429587339115581	0.948860320666845	0.988169196639905
Merged-chr2-78046201-3	chr2	78045703	78046703	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-4974.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	2.39588869983223	2.58185958782299	2.61780592312657	2.34356087837159	2.47285649372988	2.5680171038269	-0.424082454432852	0.600630504145267	1
Merged-chr15-79038053-4	chr15	79037545	79038545	+	940.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013847, exon 9 of 9)	3' UTR (NM_013847, exon 9 of 9)	-3840.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	3.20629779235004	3.21074212948756	3.53357973281475	3.06951022968617	3.16861463508549	3.50321332568805	-0.263217919195155	0.688404372178888	0.917216444209858
Merged-chr2-118905595-4	chr2	118905112	118906112	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	3997.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	2.63685949775928	2.88890374191953	2.91628671117539	2.91606886575562	2.74802656065807	2.98865177568019	0.326692101497798	0.653974809331345	0.903623868780893
Merged-chr14-51941393-4	chr14	51940874	51941874	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18601.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	6.60800755942729	6.60163658856897	6.63856368653766	6.19594159526455	5.84934535374149	5.81594565383632	-1.07526867547136	0.000212854532987377	0.00526179440903556
Merged-chr1-139003737-4	chr1	139003241	139004241	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	26084.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.14794994165694	4.34620667583746	3.60739821517305	3.93126886414252	3.69918657361814	4.06167444525171	-0.516935712605781	0.374728744497139	0.758118627242714
Merged-chr14-20675540-2	chr14	20675040	20676040	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172596, intron 1 of 22)	intron (NM_172596, intron 1 of 22)	1219.0	NM_001168273	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	4.38189709454627	4.14070361766238	4.07150656496484	4.25786580410123	4.16899868765696	4.28291113931262	0.0611105820467115	0.896853724333853	0.97587199430405
Merged-chr4-139167507-1	chr4	139167007	139168007	+	595.0	f1_c57bl6.idr	Intergenic	Intergenic	13148.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	4.17592660534197	4.00738904039694	3.96287686291202	4.44880563969066	4.49800324266597	4.18769113870208	0.919435117758806	0.0542694570485806	0.299168741360693
Merged-chr3-108886277-4	chr3	108885752	108886752	+	717.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	3756.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.81175119430124	4.56872904477731	4.66204375040335	5.07432754623724	4.71531888150904	5.21787554779535	0.721504691449282	0.084139523444721	0.383769539664946
Merged-chr4-32170954-3	chr4	32170427	32171427	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206820.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.55809845750601	3.8110900370087	3.68677803325411	3.90684127314477	3.9615481209158	4.0555041764504	0.897842955600443	0.090049697638122	0.398938091847133
Merged-chr19-55660926-2	chr19	55660426	55661426	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41278.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.60147055515804	6.19417867425108	6.43146497267802	6.23728530791542	6.30645617775388	5.95965329998455	-0.384613452716914	0.20186188970041	0.591489386843389
Merged-chr3-81931886-2	chr3	81931386	81932386	+	594.3000490000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	-715.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	4.54344131194717	4.76437363161785	4.2215121148327	4.19140270146077	4.38321175262532	4.08643397307188	-0.780719913603892	0.1085892812843	0.440273571814211
Merged-chr12-3835263-3	chr12	3834727	3835727	+	649.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 2 of 23)	exon (NM_001271753, exon 2 of 23)	27017.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.02108891467343	5.83074165577676	5.56057449731166	5.91652532718478	6.08706942334068	5.49897561435215	0.0787272887644089	0.822042044060755	0.958041123079214
Merged-chr1-171284221-10	chr1	171283702	171284702	+	901.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 6 of 12)	RLTR17B_Mm|LTR|ERVK	-3016.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	6.07157383198817	6.07688799396942	6.15173521297808	6.09514499168524	6.336424015786	6.29291509486662	0.253548520362152	0.370923153575031	0.755132456514758
Merged-chr9-100590645-2	chr9	100590145	100591145	+	615.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19560.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	2.55491047925167	2.48341736035774	2.81237372743053	2.75904114121118	2.47620019079623	2.82648951727923	0.39470398736861	0.618728924327332	0.889515655407396
Merged-chr1-9592972-2	chr1	9592472	9593472	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-8295.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	3.50257609628104	3.59739261486197	3.52406030719367	3.57636930644516	3.53749407948863	3.94129467233658	0.502886053645074	0.380810501832449	0.762812239912963
Merged-chr7-142384876-2	chr7	142384376	142385376	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	2994.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.75842380069385	4.81492978614911	4.86547163231068	5.71469502314615	5.49350821556445	5.04982617750403	1.33801070383693	0.000598285648097488	0.012121293451886
Merged-chr6-39592651-4	chr6	39592148	39593148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358797)	promoter-TSS (NM_001358797)	83.0	NR_152450	68198.0	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	7.91391022636563	8.22588571494143	7.56690604140473	8.03568288766149	8.18009770639723	7.69302459415067	0.0754084114535685	0.784028211929106	0.94743336854927
Merged-chr1-155050354-4	chr1	155049858	155050858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32906.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	8.03014670381721	8.11617090063877	7.66441482838334	7.94193741981874	8.31248312012517	7.71139785323571	0.0911734256267593	0.734187862546801	0.932325051544019
Merged-chr15-64085979-4	chr15	64085481	64086481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276462)	TTS (NM_001276462)	-25533.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	7.09653140795392	6.99571984332982	7.11736267877364	6.77067388510391	6.89491479516675	7.02326191081629	-0.263688544794196	0.282547187651138	0.680451612659422
Merged-chr15-58754785-3	chr15	58754279	58755279	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68648.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.10521483146481	5.77136191750906	5.53063101747235	5.87826611595341	5.41265416794744	5.50256427153976	-0.399281564996964	0.267826869750595	0.664975925109882
Merged-chr14-103345225-2	chr14	103344725	103345725	+	580.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	1575.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.81893922119064	6.04783358274554	5.83484781004489	6.09226901148048	6.4875148102094	6.29940388973256	0.678738796476723	0.0256158378929904	0.189689924516129
Merged-chr9-79793519-4	chr9	79793023	79794023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133718)	promoter-TSS (NM_133718)	-93.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	7.01567698306082	7.23709871783292	7.01019919669152	6.97595337785559	7.32334841737376	6.85091645830016	-0.0263535598252261	0.921723073722226	0.982542868764899
Merged-chr18-11687023-3	chr18	11686524	11687524	+	900.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 4 of 18)	intron (NM_001081223, intron 4 of 18)	29675.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.16046725109886	4.38343432092956	4.49139474222934	5.65851118911684	5.80407995877265	5.91039176199583	3.19954881917336	7.73011369066486e-15	2.07971115156732e-12
Merged-chr7-65693470-4	chr7	65692909	65693909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026795)	promoter-TSS (NM_026795)	-8.0	NM_178056	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	6.52345335524156	6.84199510258588	6.75288180323435	6.72782905435286	6.42672846062314	6.1616429877363	-0.39069849945357	0.18750354435253	0.572563944309344
Merged-chr10-86021851-4	chr10	86021351	86022351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153195)	promoter-TSS (NM_153195)	-78.0	NM_153195	69754.0	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	7.67859658581461	7.84459421510554	7.7812760032538	7.71424298760727	7.64655621655165	7.53507218356907	-0.191932137329561	0.384970901291441	0.766074969021339
Merged-chr2-163669254-1	chr2	163668754	163669754	+	549.0	f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	L1_Mus2|LINE|L1	10796.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	3.18727709656903	3.17704970340028	3.20118407546133	2.95260585917287	2.93712781544686	2.91504194178359	-1.16849336844829	0.0818645095686543	0.37857474081624
Merged-chr4-140989629-3	chr4	140989092	140990092	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	2719.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	7.09658329320635	7.48602430460081	7.59851353199284	7.1644394403046	7.21422148759154	7.04438149288693	-0.386721416278329	0.137117435506597	0.4947644221003
Merged-chr19-18615995-3	chr19	18615495	18616495	+	709.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	B3A|SINE|B2	15818.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	4.68421599782136	5.26510119063315	4.84105857530277	4.93667582685696	5.15527827083136	5.12332872594661	0.238588171409415	0.562741079020869	0.865755360453189
Merged-chr15-99652462-3	chr15	99651970	99652970	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-814.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	4.18246944242979	4.01984256194979	3.85212996695253	3.99145638080729	4.25352514032429	4.02754369951519	0.204813534142028	0.68546518297137	0.916264475254709
Merged-chr11-78359737-4	chr11	78359234	78360234	+	941.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13024.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	4.25520813055766	4.28043303249272	4.27015456307661	4.10099992386602	4.05294749385552	4.0583186078083	-0.559469531255876	0.229571344312524	0.62518794057613
Merged-chr3-88551702-1	chr3	88551202	88552202	+	957.0	f1_c57bl6.idr	TTS (NM_001362368)	TTS (NM_001362368)	1249.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	4.41389309606192	4.32611408170529	4.50605508369227	4.24491523599228	4.32371231353892	4.57179733209732	-0.0862106308720636	0.847162548948641	0.964173182504699
Merged-chr2-168956056-3	chr2	168955538	168956538	+	973.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	-451.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	6.58338718574708	6.62423611929723	6.14536845249975	6.20356918190914	5.98570232049968	5.6868320263618	-0.823596924710679	0.0107565001143264	0.105770132535201
Merged-chr5-135573171-4	chr5	135572664	135573664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019577)	promoter-TSS (NM_019577)	-115.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	6.97413750925771	6.56836863431463	6.73473915259359	6.60540542630961	6.9530236145011	6.69765276176388	-0.00589432139757058	0.983194659719085	0.996242007327823
Merged-chr16-25052573-3	chr16	25052059	25053059	+	947.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7080.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.17950765047613	6.14120549823629	6.13522926765415	5.93366899240473	5.87441339958441	5.71099219458799	-0.525796215943834	0.0729362478342828	0.354863718266577
Merged-chr1-131827932-4	chr1	131827447	131828447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173865)	promoter-TSS (NM_173865)	-65.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	6.98633083803833	6.98416073645198	6.69383621816201	6.60700746103712	6.72547253142948	6.38803264315293	-0.486277112771942	0.0729215778049001	0.354813089643303
Merged-chr8-3631107-4	chr8	3630614	3631614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011503)	promoter-TSS (NM_011503)	5.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	7.5448267597701	8.00359112534693	7.41829133562281	7.60063346232218	7.82402175378434	7.31415833719277	-0.121754872466008	0.664779680151737	0.907721942545399
Merged-chr10-77972352-3	chr10	77971843	77972843	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	6.65156950634701	6.57982768657561	6.95084031973577	6.67066147663266	6.7940794947773	6.75367271608333	0.0226976155404539	0.931806819205449	0.98494489810252
Merged-chr1-191092510-7	chr1	191092006	191093006	+	981.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5908.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.04035751159222	7.13231605656518	7.34008025043687	7.11608665303554	7.6392711683518	7.30946314495466	0.31184188157884	0.242909823828304	0.640158888947987
Merged-chr1-133613844-4	chr1	133613353	133614353	+	773.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER96|DNA|hAT-Tip100	-3573.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	2.64887515112353	2.84869386977554	2.95623645751373	2.71481916133514	2.68477319656161	2.73242042845801	-0.585355704270519	0.428665801236151	0.795420465213011
Merged-chr12-3780492-4	chr12	3779994	3780994	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26486.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.52184413525131	6.65660365291091	6.58952707417953	6.39512799456905	6.6618089518191	5.9874289580799	-0.314052249969492	0.306215607755541	0.702381417193822
Merged-chr5-120502210-4	chr5	120501724	120502724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	1399.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	5.37211912857698	4.97187522738514	5.33541743136072	5.69946840203684	5.81074980247329	5.46135193177304	0.847365076291442	0.0175027865721904	0.147735023848531
Merged-chr3-90000055-4	chr3	89999560	90000560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001165984)	TTS (NM_001165984)	1300.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	7.46480016377184	7.36964155160941	7.0052836667005	7.29805191616403	7.59466808164418	7.18454721659351	0.112307214318358	0.674746380967689	0.911862676707532
Merged-chr15-64103409-2	chr15	64102909	64103909	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-42961.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.6607439744518	3.64510798011685	4.12801482674791	3.7657212430533	3.29876149871047	3.83943582369973	-0.565578137563715	0.358279108622716	0.744602774931622
Merged-chr15-80947679-2	chr15	80947179	80948179	+	700.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-811.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	3.3152478963928	3.66375412478985	3.56120396969942	3.46899788246701	3.57467644162275	3.52400099541997	0.00918515982442082	0.98751813960472	0.997218304929226
Merged-chr12-44269719-4	chr12	44269219	44270219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	565.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	8.40388349050842	8.63096944226197	8.30577912841045	8.45419322448315	8.43562586233713	8.44385134615173	-0.0200288186070774	0.924809519723701	0.983070278897208
Merged-chr16-90728557-2	chr16	90728057	90729057	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1186.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	3.09644071520646	2.92953320312459	3.08227660926791	3.11600242930513	3.05149392272306	3.03569103173743	0.146238873175373	0.824606486970144	0.958596193929081
Merged-chr16-35752058-4	chr16	35751554	35752554	+	691.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	RLTR13D|LTR|ERVK	17302.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.55795868151534	3.96949040952946	3.93143992633063	4.00530749331565	3.81475300836571	4.00022934401261	0.333860758441457	0.53682286078774	0.854215768737235
Merged-chr10-75490930-4	chr10	75490433	75491433	+	995.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	26448.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	4.95517536992145	4.62752958395794	4.76433649382598	4.72713722519222	4.93791163920859	4.83026819497098	0.108607963574217	0.787699410350504	0.94877064431094
Merged-chr17-47509148-3	chr17	47508626	47509626	+	924.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4075.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.81644763923652	6.01147132056788	6.31369488357082	6.24439536184471	6.54260557326952	6.15192577190922	0.473432375791286	0.131965160199649	0.485811837904656
Merged-chr15-79928970-1	chr15	79928470	79929470	+	552.0	f0_balb.idr	intron (NM_144811, intron 2 of 6)	intron (NM_144811, intron 2 of 6)	3676.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	4.19539322088233	4.02169061043617	4.41808912769136	4.23102210547089	4.40492513758208	4.67483344877213	0.608410273066377	0.202958960012641	0.592804308646864
Merged-chr6-65142339-2	chr6	65141839	65142839	+	824.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	2391.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	5.73607433720589	6.03434278556607	5.24077618854068	5.15768205006933	5.73493268602431	5.59276788418261	-0.36755877755057	0.359258150236839	0.745446551579934
Merged-chr6-38947379-2	chr6	38946879	38947879	+	931.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	28393.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.01177882696119	3.77820111674365	4.02784463384807	3.94440539148041	3.69441224464027	3.85383795659481	-0.343255054814295	0.512125799686219	0.841704298897641
Merged-chr19-37154595-2	chr19	37154095	37155095	+	897.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	ORR1F|LTR|ERVL-MaLR	-19248.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.99662286818962	3.77518168657711	3.99553583131178	4.17204967912437	4.04287495336491	4.24736077435684	0.672431311020596	0.174923113459042	0.554615474222784
Merged-chr9-37605842-3	chr9	37605362	37606362	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001324545, exon 4 of 5)	exon (NM_001324545, exon 4 of 5)	7858.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	3.0111040200301	2.9852417480075	2.8709082820069	2.90302207054838	2.87304509765723	3.00443371843949	-0.174027856672197	0.799459250528377	0.952248176414355
Merged-chr15-96641627-4	chr15	96641124	96642124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134086, exon 1 of 16)	5' UTR (NM_134086, exon 1 of 16)	338.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	8.61629187268236	8.93633057312504	8.34002186570126	8.3995613908099	8.55281228444063	8.03495164224694	-0.424430444733305	0.106918766166785	0.436454439973323
Merged-chr9-55149252-4	chr9	55148750	55149750	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346657)	promoter-TSS (NM_001346657)	-119.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	5.64777992924652	5.20658337684354	4.96475101245945	5.39543055976537	4.30066870983766	4.99398307089606	-0.664947693637044	0.187734989539196	0.572987312749648
Merged-chr4-134764468-4	chr4	134763969	134764969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3535.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	7.23136766589253	7.23547743687156	7.41795607393618	7.48698502887012	7.49519650262132	7.34629746050015	0.2309759515838	0.317031808925489	0.710963312771456
Merged-chr10-59328041-4	chr10	59327529	59328529	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	4733.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.27318711199774	5.21119555968429	5.02629275875214	5.11864140271705	5.1740388465466	4.94164791192927	-0.189273165353071	0.606037735773277	0.883842874272091
Merged-chr8-80879472-2	chr8	80878960	80879960	+	998.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	CpG	1019.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	6.07673611906658	6.25471203188133	6.17577405292335	5.71586785476336	5.66592936181225	6.09119581024456	-0.605499693313409	0.0509064384239375	0.28742776198541
Merged-chr4-55651264-4	chr4	55650756	55651756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-118781.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.40601940902202	8.41260804738677	8.18624829647862	8.15642183861098	8.07860895093608	7.9198462149436	-0.399753929060349	0.0653711466684236	0.333380761590522
Merged-chr2-71353843-4	chr2	71353323	71354323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	13731.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.04428669290222	4.80792480756056	4.97982038283034	4.67843756082707	4.89873580846307	4.78790012171293	-0.334341087772139	0.395607779732773	0.772934444820245
Merged-chr8-120608014-4	chr8	120607486	120608486	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_197988)	TTS (NM_197988)	-18911.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.566869686271	3.08034406527099	3.55284054844545	3.57482837813345	3.48574295684189	3.77329323449483	0.702601215452656	0.270645967951962	0.667629387731657
Merged-chr8-4493952-4	chr8	4493433	4494433	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026058, intron 1 of 10)	intron (NM_026058, intron 1 of 10)	528.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	4.26095375774042	4.58822811004501	4.58511023539128	4.61306739785439	4.26923632143962	4.79941336228205	0.206059113269864	0.657070606727558	0.904749338441592
Merged-chr4-43494085-1	chr4	43493585	43494585	+	1000.0	f1_c57bl6.idr	intron (NM_001037913, intron 2 of 5)	intron (NM_001037913, intron 2 of 5)	720.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	4.95489159661435	5.20563832510827	5.06867775738981	4.78891808919386	4.98729609623353	5.09923917113092	-0.25976498655431	0.494966144091749	0.832153667472614
Merged-chr17-71000513-2	chr17	71000013	71001013	+	966.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	2020.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	4.28705979005536	4.48149534770418	4.59986436874609	4.73920999755877	4.78511367126228	4.74419007624576	0.731855835907292	0.080250647223494	0.374819047095901
Merged-chr15-60825538-2	chr15	60825038	60826038	+	589.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	-458.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	4.81442190668012	4.34147903524193	4.3757164549445	4.59028313914066	4.50454934011398	4.53278409099129	0.0125849130379705	0.977732573854738	0.99491955840204
Merged-chr10-67284921-4	chr10	67284411	67285411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	CpG	370.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	8.01830013373951	8.30713074806454	7.82658424219548	8.06912444491984	8.20303547818067	7.87434046377812	-0.0164918942181828	0.946255187147742	0.98796006280508
Merged-chr18-38003405-4	chr18	38002905	38003905	+	828.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4436.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	3.59771606106991	3.58585308812897	3.56578042131488	3.7264443028387	3.55238606438762	3.98233197661292	0.582818806734961	0.300723384291668	0.697416075145381
Merged-chr4-93552794-2	chr4	93552294	93553294	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-217283.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	2.39664605313705	2.3610602232864	2.54111677147991	2.42026249068282	2.37539156638456	2.35919683348166	-0.289336145672876	0.72175670282756	1
Merged-chr7-34390925-4	chr7	34390424	34391424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1219.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	4.83209148724565	5.12721683609315	5.2898745210111	5.12260908940723	5.28838111248743	5.13067662959219	0.208346706651414	0.581509784687308	0.873299082500526
Merged-chr5-30869602-4	chr5	30869104	30870104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144525)	promoter-TSS (NM_144525)	25.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	6.51343509731682	6.61433275673181	6.73615468351394	6.60280024314015	6.52769606444958	6.63795336004016	-0.0514052456314848	0.843149627067787	0.96330726515818
Merged-chr8-22862296-2	chr8	22861796	22862796	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 3 of 18)	exon (NM_001081149, exon 3 of 18)	2757.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	3.75840106931331	3.85694843721798	4.01464537597933	3.71572374177053	3.86335737110884	3.99024498493374	-0.0538622437639756	0.91787345059763	0.981747877135909
Merged-chr15-12214605-4	chr15	12214130	12215130	+	860.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	9602.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	4.82309639558845	4.66303906508675	4.42545378895689	4.41294181454605	4.25989454828075	4.20801388205555	-0.902738341040543	0.0445368879559659	0.265984807637494
Merged-chr18-80194086-3	chr18	80193586	80194586	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131039)	TTS (NR_131039)	6533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	3.53125538287478	3.18798789625373	3.77548835088937	3.35283489784397	3.21152122934136	3.44677843211012	-0.669582742842407	0.295893646524184	0.692709629999205
Merged-chr6-88829789-4	chr6	88829279	88830279	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12156.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	5.10649577962701	4.75590955509435	4.72916801759647	5.28966577432714	5.4328157847548	5.27465680203725	0.945378790732928	0.0134971315970969	0.123671424155632
Merged-chr17-45558095-4	chr17	45557578	45558578	+	919.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	2378.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	6.59149396281	5.50915994427257	5.52272304533135	6.18010287658367	5.88727301245358	5.55606076711097	-0.155584367708398	0.821873314120244	0.958023303204974
Merged-chr19-4111719-2	chr19	4111219	4112219	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008851, intron 18 of 22)	intron (NM_008851, intron 18 of 22)	9856.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	3.82122654218694	3.57800581786039	4.0950260913329	3.75077535784601	3.96034398806236	3.62871656945542	-0.148834377334107	0.794655622700364	0.950816910994853
Merged-chr4-63595325-2	chr4	63594825	63595825	+	848.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	5439.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	3.87329152149531	4.19285512905834	4.59564525993315	4.1792757232332	3.8686322873927	4.1375108505514	-0.504449372171708	0.346434305053674	0.734677492075457
Merged-chr13-5939534-4	chr13	5939022	5940022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78033.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.5354914051964	3.2016255297653	3.07122248963959	3.19903353076726	3.20837156667725	3.38171892021091	-0.114397762937028	0.862120833443345	0.967996224966109
Merged-chr4-126533524-4	chr4	126532943	126533943	+	929.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	15.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	5.66624329674011	5.89719699781132	6.03687652169528	6.07657594041019	5.9297235409117	5.61989410977323	0.051622718577683	0.874405530414999	0.970754540400126
Merged-chr2-129297800-4	chr2	129297281	129298281	+	946.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181589)	promoter-TSS (NM_181589)	411.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	6.87280946597078	7.16202739857285	7.16778800177617	7.4564593022077	7.70922275218579	7.60588193619518	0.777970208198698	0.00147489751014112	0.0244079697740299
Merged-chr19-32494327-2	chr19	32493827	32494827	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	8558.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	3.93799729081684	3.76173841765721	3.82909225989025	4.45903540084232	4.45045209977467	4.20869435823625	1.5508494880285	0.00166249644000297	0.0267827693668474
Merged-chr9-120110783-4	chr9	120110288	120111288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	CpG	389.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	7.49236608824682	7.72958991018467	7.36723114073445	7.37039310500205	7.78553815767599	7.63747544992632	0.0989969430494261	0.695416127370784	0.919289041383579
Merged-chr1-191198860-2	chr1	191198360	191199360	+	809.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-15527.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	5.41337120432934	5.05648577851094	4.78459551099957	5.1608514532753	4.98772153649433	4.85259282370589	-0.236006196511923	0.564390856161477	0.866342619209404
Merged-chr11-70580204-2	chr11	70579704	70580704	+	799.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	PB1|SINE|Alu	17323.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	4.87790935470603	4.96665813226043	4.99075502052516	4.62081393239428	4.4315841751142	4.42445927643793	-1.05339537662546	0.00990811806498599	0.0998346679524527
Merged-chr8-111539978-4	chr8	111539461	111540461	+	924.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	MIRc|SINE|MIR	1618.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.26367406734181	4.17731386793912	4.04045791569135	3.86984164181915	3.83385248298463	4.01217761684809	-0.808166903979057	0.102603051339375	0.427190127387876
Merged-chr13-37965527-5	chr13	37964945	37965945	+	951.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28763.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	6.49386363528921	6.14863255036079	6.23657925929719	6.06141824998239	5.93434488820489	5.66412813570325	-0.678243590000763	0.0293698935832054	0.206076237997361
Merged-chr11-95829379-2	chr11	95828879	95829879	+	922.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163464)	TTS (NM_001163464)	4879.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.68708658581581	4.78711264247438	4.92373763262897	4.94601665108328	4.99096361161228	4.98841683539217	0.40022094377273	0.295108998038538	0.691990077927385
Merged-chr5-121543719-2	chr5	121543219	121544219	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010765, intron 1 of 13)	intron (NM_010765, intron 1 of 13)	2173.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	3.46425770544291	3.58150306118008	3.42328305750107	3.41448283350464	3.69295516455327	3.75919696179891	0.476083944549416	0.412617958675338	0.784551818322662
Merged-chr11-117191535-5	chr11	117190951	117191951	+	915.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8210.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.22547086451089	3.05272887508817	3.25328538579548	3.49899144616813	3.22931785571839	3.3255181392895	0.726248134985962	0.250064116285881	0.647283121185894
Merged-chr11-120938128-3	chr11	120937646	120938646	+	864.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5274.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.44581991197477	3.04569120863709	3.44655073677609	3.18030014400117	3.27813224874171	3.41081727725157	-0.130536854182738	0.840317532872816	0.962819298477451
Merged-chr10-117288414-4	chr10	117287899	117288899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013590, exon 4 of 4)	3' UTR (NM_013590, exon 4 of 4)	4469.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	6.31202489773748	6.28217368651652	6.38007370376947	6.03841462339675	6.07661642695761	6.16487395381634	-0.389263505379649	0.159743286266611	0.532059857644389
Merged-chr17-56926995-4	chr17	56926510	56927510	+	857.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022328, exon 2 of 12)	exon (NM_022328, exon 2 of 12)	8378.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.15644765748085	2.79582445678781	2.97289032416218	2.8839759537581	2.77467160767344	2.92518743743396	-0.60581227965981	0.396739089868209	0.773734965167923
Merged-chr1-128722234-4	chr1	128721746	128722746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129947.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.93803867815846	6.72714639156247	6.60209978025836	6.42964130376561	6.51165806490468	6.5214408882242	-0.448143552481831	0.0918536957409713	0.403690568179321
Merged-chr9-65740325-2	chr9	65739819	65740819	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	63771.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	4.02060440336112	4.39576483494655	4.45953502419479	3.52323051148864	3.38560698435359	3.76805300062866	-2.47496208744205	2.30257760408111e-05	0.000824764861301683
Merged-chr15-41790825-3	chr15	41790340	41791340	+	789.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130163, intron 1 of 13)	MIR3|SINE|MIR	1325.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.74079803704578	2.75658174725765	2.83406007352459	2.65645698921974	2.67422850875803	2.84692215109456	-0.272805143726431	0.707658667203028	0.923504801393744
Merged-chr10-62492301-2	chr10	62491801	62492801	+	806.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5496.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	6.33374030303965	6.04843279585129	6.2587345092242	5.88512192660176	6.38525498018094	6.19727064038997	-0.0635824083194268	0.837792623354321	0.962248414047239
Merged-chr6-113657163-3	chr6	113656647	113657647	+	897.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	18680.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	4.70158172841707	4.14977042901135	4.42225739055761	4.85799910311316	4.38350474405062	5.10996176552674	0.858617590809961	0.0825516432974532	0.380043018169608
Merged-chr2-45111734-4	chr2	45111260	45112260	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-500.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	7.62637598212672	7.16120037994093	7.23342216253905	7.66116923608348	7.35563344249862	7.42672774568456	0.184824553726534	0.481650552987954	0.825159653544888
Merged-chr13-106947792-2	chr13	106947292	106948292	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025447, intron 2 of 11)	B1F|SINE|Alu	663.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	5.42052326104799	5.52379726583169	5.29800502048871	5.52799985300967	5.44618971748969	5.36197941629856	0.0490647702840227	0.883650916264604	0.973426873203394
Merged-chr1-135732507-2	chr1	135732007	135733007	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	3340.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	2.87927440657861	2.73941987629626	2.85955368845628	3.05942822233392	2.98197512439209	3.05350160590064	0.995104984993616	0.150662825615043	0.517564234271863
Merged-chr6-123053885-2	chr6	123053385	123054385	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027218, intron 2 of 4)	intron (NM_027218, intron 2 of 4)	3923.0	NM_001190310	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	3.88353494338498	4.01903711274469	3.79442222428862	3.81620834898249	4.02069834046687	3.86497880248914	0.00427692740397739	0.993396668733725	0.998651348330892
Merged-chr7-30560615-2	chr7	30560115	30561115	+	867.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-969.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	3.73547256215314	4.20876519411221	4.35268039678857	3.99010856759171	4.24631299080652	4.11436594317805	0.011865070063494	0.982161033793085	0.995986195506014
Merged-chr12-116262982-4	chr12	116262487	116263487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146039)	promoter-TSS (NM_146039)	38.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	3.69523161275324	3.57861657514673	3.50875877560569	3.30007685388167	3.45329482402771	3.579446101685	-0.561879237119778	0.335606070886568	0.725742240925452
Merged-chr14-121903946-3	chr14	121903485	121904485	+	731.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	11789.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.63517661355137	4.5052722694145	4.74329962699035	4.68921306400574	4.47907158462695	4.84441539935827	0.102802945721736	0.80788126415645	0.954583809755663
Merged-chr5-124016725-2	chr5	124016225	124017225	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	15535.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.39354500331639	5.06283508641492	4.96732463347144	5.68487410612698	5.55613677640916	5.07398425210019	0.612786743539592	0.119331126408387	0.461806630677133
Merged-chr8-68918553-2	chr8	68918077	68919077	+	687.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38022.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.61680638535481	4.37986030570525	4.42631027532952	5.21937411187856	5.19600227721262	4.72196240887039	1.35427116422652	0.00147100007769182	0.0243725556480648
Merged-chr15-95806201-2	chr15	95805701	95806701	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	MTE2a|LTR|ERVL-MaLR	15358.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.29697666983085	6.30761299115295	5.98497364558271	6.31594647651302	6.42931344431192	5.56090437653551	-0.0661285544360994	0.854422852391992	0.965987623019113
Merged-chr19-8892990-4	chr19	8892487	8893487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176843)	promoter-TSS (NM_176843)	0.0	NM_176843	109077.0	Mm.290474	NM_176843	ENSMUSG00000071652	Ints5	1110055N21Rik|mKIAA1698	integrator complex subunit 5	protein-coding	6.64571219407294	6.2888373841226	6.73563657382209	6.62890373687907	6.4244999070657	6.67143677221982	0.015311040336543	0.957212226335391	0.989925627980654
Merged-chr12-85437271-4	chr12	85436759	85437759	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36631.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.568529621298	5.53951734156708	5.11883043848476	5.11217700006557	5.08112112722031	5.31796690128677	-0.540325051974517	0.140256374033891	0.500561531163901
Merged-chr9-124025428-1	chr9	124024928	124025928	+	600.0	f0_balb.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	3457.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.11095782189788	6.14388889200386	5.81390263467088	4.78527766299551	4.43475144746017	4.73149491570869	-2.87536784347882	4.1897983694813e-14	1.0163986668449e-11
Merged-chr15-97169601-4	chr15	97169161	97170161	+	896.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2417.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	4.80805676367386	4.91335196331208	4.65628408908017	4.27800139513524	4.16732320721428	4.23539104932288	-1.46488639403169	0.000793710126982637	0.015078317864377
Merged-chr12-118300238-2	chr12	118299738	118300738	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 2 of 5)	intron (NM_001166385, intron 2 of 5)	1202.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	3.89784076133888	3.87531117989198	4.01629194397201	4.11480706997328	4.20537762244069	3.88343899553087	0.468270685367183	0.350280005076185	0.738319835221541
Merged-chr18-12740735-4	chr18	12740240	12741240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-615.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	6.66642492833154	6.81064247025242	7.06634366101387	7.14250234446356	7.36347198721807	7.22107052199274	0.60744121453039	0.0178601877357965	0.149960696379431
Merged-chr2-62685451-4	chr2	62684946	62685946	+	957.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145523, intron 3 of 7)	intron (NM_145523, intron 3 of 7)	21119.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	3.65025530593123	3.72696331312265	3.41522113484785	3.84941030869765	3.85954348665474	3.71935222467501	0.669413465298999	0.2328829844459	0.629208279045831
Merged-chr11-76456405-3	chr11	76455910	76456910	+	904.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 10 of 21)	intron (NM_001346670, intron 10 of 21)	12055.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.80709752320989	2.56509856065555	2.71198565227669	2.79654258695583	2.61705549964527	3.02251907440559	0.612018384103396	0.422996112161534	0.791736823770935
Merged-chr14-120453277-4	chr14	120452762	120453762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-25199.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.88371031809586	5.73914414900051	6.0249701953793	5.85488683504588	5.58772879648208	5.18712484670738	-0.544229009845308	0.126743815737693	0.475713808466866
Merged-chr13-55024421-4	chr13	55023905	55024905	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3020.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	5.94221487178181	5.66338755009463	5.91320485350193	6.09375207593184	6.52737206750825	6.46260588988258	0.911693244705127	0.00323745940658786	0.0446630614615829
Merged-chr12-32138530-3	chr12	32138046	32139046	+	695.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69792.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.22837395163135	4.25159820763481	4.21816740388847	3.9809305816122	3.82366386607227	4.05441440866482	-0.835299948476954	0.0846953583650972	0.385394912984962
Merged-chr18-25331242-4	chr18	25330742	25331742	+	869.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 6 of 10)	Lx2|LINE|L1	162222.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	2.78655548003668	2.85368996151406	2.90745856200131	2.51038824835062	2.62950471021858	2.92170535667087	-0.820103569454113	0.287901746844536	0.685252111085562
Merged-chr2-132090019-4	chr2	132089532	132090532	+	880.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 4 of 6)	intron (NM_001355431, intron 4 of 6)	55076.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.27289774993888	4.38184934995162	4.28967878455592	4.15165641180547	4.01206312883758	4.07724805262487	-0.665462527788193	0.153188130581506	0.522003484275517
Merged-chr5-8422761-4	chr5	8422260	8423260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289595)	promoter-TSS (NM_001289595)	-44.0	NM_001190717	27214.0	Mm.292470	NM_013726	ENSMUSG00000002297	Dbf4	AA545217|Ask	DBF4 zinc finger	protein-coding	6.9136203132164	6.80320378596303	6.82987127699425	6.7683460890985	6.59871114404607	6.4913992832049	-0.347762910517	0.176338961686625	0.556535671844783
Merged-chr6-129626119-4	chr6	129625692	129626692	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2328.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	4.48229149305533	4.78094060254317	4.48832098859258	4.88770696079748	4.69857136276188	4.87679462969348	0.510929084612867	0.221938707098199	0.616788023295903
Merged-chr6-108829096-3	chr6	108828594	108829594	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138677, exon 1 of 12)	exon (NM_138677, exon 1 of 12)	453.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	7.93558718022414	8.12053082443583	7.81572452619827	8.20962284041888	8.2408565127583	7.92985388795762	0.242246380556558	0.292395693395864	0.689626231469153
Merged-chr17-28420542-4	chr17	28420057	28421057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-55341.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	6.64193816723415	6.4720119812028	6.28618195585714	6.40033060357494	6.90659191164001	6.73695289104168	0.355375236070109	0.227742324470701	0.622885856743146
Merged-chr16-91452748-4	chr16	91452257	91453257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12347.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	7.04900221733824	6.98947901248005	6.746964780164	6.84177694698725	7.34348841955463	6.98576095249315	0.216782744657071	0.432373230358136	0.797325290360352
Merged-chr19-42089410-4	chr19	42088893	42089893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1042.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	7.43948442704228	7.50150200329567	7.23743179206361	7.45125955409108	7.95383491266943	7.57784503310626	0.414013447508917	0.108559317960475	0.440269226926703
Merged-chr7-6286436-4	chr7	6285932	6286932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024928)	promoter-TSS (NM_001024928)	-148.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	7.75616966155218	7.99917000144232	7.5911492988872	7.71558277734066	7.96753897981624	7.40420958758323	-0.1040197165801	0.693506060083924	0.918960880648635
Merged-chr16-4754295-4	chr16	4753793	4754793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2653.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	7.58001143879682	7.8006679090673	7.51782555644491	7.46364507900964	7.82267153295703	7.44975918556487	-0.0635307248270239	0.798224916560154	0.951930937621884
Merged-chr10-13499064-2	chr10	13498564	13499564	+	807.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1964.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	5.01453232877296	4.8645972710206	4.72683651605438	5.00193427462953	4.79767716862383	5.27740631536958	0.320238132764567	0.427971318113198	0.79478410196054
Merged-chr17-34136747-2	chr17	34136247	34137247	+	931.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 2 of 5)	intron (NM_001360530, intron 2 of 5)	-8669.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	5.02858389065365	4.81178638063129	4.7981213695816	5.34591956443733	5.35702271036549	5.05821117215397	0.799113590804257	0.034188556713954	0.226270225805922
Merged-chr4-129032318-4	chr4	129031827	129032827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25944.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	8.58583372732271	8.41073815965226	8.17150158690711	8.42856593262642	8.72447835544556	8.51829061512451	0.22248749379755	0.332464249681796	0.723636403333698
Merged-chr14-121598854-3	chr14	121598330	121599330	+	820.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347596, intron 34 of 52)	intron (NM_001347596, intron 34 of 52)	-93576.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	3.58232171271986	3.59898919752754	3.32212782580135	3.31865464339847	3.22391982383088	3.50701967015684	-0.631876038158136	0.301124657038562	0.697832487817053
Merged-chr11-77317928-3	chr11	77317435	77318435	+	744.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	MLT2B3|LTR|ERVL	-30345.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.23779661534723	3.20975621344525	3.1760948914175	3.30052925775184	3.21277151408226	3.30572862706858	0.253851243467726	0.680722854165085	0.914414659434777
Merged-chr8-111259175-5	chr8	111258598	111259598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009149, exon 1 of 26)	exon (NM_009149, exon 1 of 26)	104.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	8.71774951981172	8.92544420593708	8.56080818093736	8.63995585959485	8.63802672785473	8.51406953195319	-0.203269839791375	0.341952163733774	0.731142095278512
Merged-chr12-24713911-2	chr12	24713411	24714411	+	942.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009104, exon 10 of 10)	3' UTR (NM_009104, exon 10 of 10)	5657.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	3.12598946120919	3.04474219146035	2.99316267603724	3.10588971194839	3.03319711793025	3.24093592348467	0.291111757505042	0.657130429428119	0.904749338441592
Merged-chr7-27472911-4	chr7	27472422	27473422	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-918.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	7.19153692232712	7.10474644785416	7.12919562124829	7.49125713246703	7.43990073967629	7.38537337012371	0.443338369433114	0.0514667915180889	0.289237389479747
Merged-chr9-40322478-4	chr9	40321979	40322979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-1156.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	8.06710377726188	8.10636329179428	7.2962683614786	7.49587304647609	7.74900493028944	7.0566126011076	-0.587326755131065	0.0672700498539263	0.339137666469697
Merged-chr15-59828617-4	chr15	59828135	59829135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33676.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.69453123851485	5.52336274106588	5.21346962422348	5.21810409371045	5.09856275308061	4.90299761876555	-0.830357684162979	0.0260564773148532	0.191520093905102
Merged-chr3-103279719-4	chr3	103279226	103280226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053170, exon 1 of 20)	5' UTR (NM_053170, exon 1 of 20)	433.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	7.54727679921381	7.24816965841804	7.52910637915194	7.6054709119749	7.14199332438272	7.54769573203515	-0.00550223605413959	0.983215479782723	0.996242007327823
Merged-chr2-36230014-1	chr2	36229514	36230514	+	566.0	f0_balb.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	-412.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.42304960595557	5.4678146786452	5.25572179051225	5.67042818278183	5.43905752296305	4.85913365232477	-0.0231202133913837	0.953808843337432	0.989446911725587
Merged-chr19-5118365-4	chr19	5117840	5118840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008451)	promoter-TSS (NM_008451)	68.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	4.61862657437028	4.28652047441014	4.71364016440822	4.29855405470119	4.29270662497215	4.38223106751567	-0.569588982941533	0.20910812186374	0.600395742030301
Merged-chr19-11740364-3	chr19	11739856	11740856	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7203.0	NM_008118	14603.0	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	3.65740188653025	3.78376217885242	3.84030159333863	3.71521124818963	3.6746571118236	3.86030415808572	-0.0423041580011903	0.936631293204036	0.986037792257163
Merged-chr12-31634651-4	chr12	31634180	31635180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-22.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	7.61187196723954	7.82692049400897	7.2328650995772	7.65120036472476	7.54814341456256	7.00305417438101	-0.216331161810591	0.463134851199027	0.815662635550835
Merged-chr10-67100360-2	chr10	67099860	67100860	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	3.49650242112039	3.35727035248142	3.31240606924651	3.48596696584341	3.05432081031391	3.32698833990595	-0.373983105011872	0.559483063785083	0.864958249988122
Merged-chr18-53862885-4	chr18	53862384	53863384	+	921.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 1 of 12)	CpG	771.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.18184193095213	6.93121495447442	6.72209220324961	6.80268991577113	6.37197523893863	6.81201118813644	-0.459766169087889	0.11262920858155	0.448338447691312
Merged-chr9-124282219-4	chr9	124281713	124282713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30481.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	6.04097285776654	6.29643106684419	6.22255096014239	6.18534269036058	6.22809226028347	6.17912172773289	0.0149157305628117	0.957986417379389	0.990000537228272
Merged-chr18-32147632-4	chr18	32147125	32148125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8055.0	NM_001042767	19123.0	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	3.72600915478433	3.56238082332683	3.64605417257455	3.3677308983994	3.1579734049041	3.50587929386992	-1.15518397500927	0.0562854659339589	0.305844775643757
Merged-chr10-77271067-4	chr10	77270571	77271571	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11771.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	2.95210545705898	2.87483022975608	3.31870958337794	3.32335239433849	2.91229954047528	3.05173223979082	0.215881107037514	0.76184237751008	0.941338831902106
Merged-chr14-31373007-4	chr14	31372509	31373509	+	865.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	36371.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	4.60043054232755	4.62569382393523	4.77601393599859	4.54453885527191	4.49327267531405	4.48426546069368	-0.379069837315875	0.361489634661319	0.747413912465046
Merged-chr17-46522244-2	chr17	46521744	46522744	+	797.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 19 of 41)	exon (NM_001081335, exon 19 of 41)	24144.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	3.83589714159798	3.94428029652623	4.08441337017498	3.81815125767868	3.77108843870463	3.96886454272223	-0.326601843991378	0.524784957252269	0.848833934932934
Merged-chr2-166713051-4	chr2	166712529	166713529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	803.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	8.66446626064901	8.56655951844874	8.38821328502886	8.62008171914238	8.72705390262496	8.40806945641673	0.0667309208957949	0.759791327168069	0.940572672765463
Merged-chr17-24005995-2	chr17	24005550	24006550	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7950.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	3.50019091289419	3.38538993353915	3.34330617201064	3.51531266396755	3.10992870949095	3.41539367105366	-0.230336015595638	0.713311553265069	0.925479342928394
Merged-chr4-147431006-2	chr4	147430506	147431506	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MamRep1151|LTR?|LTR?	-122271.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.59094043311536	3.75091100944422	3.58374581587019	3.46130236644586	3.71524556959879	3.60013518740332	-0.161724241615856	0.774760140626875	0.944493464665915
Merged-chr11-86956608-4	chr11	86956105	86957105	+	868.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37157.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.93853137398185	5.77539689241271	5.30844191687117	5.69462223737286	6.06598734582569	5.47571539169976	0.125895688636804	0.73784984123941	0.933858424870961
Merged-chr2-153164631-6	chr2	153164129	153165129	+	817.472229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	3328.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.14131133251784	5.21628807423038	5.44605456933541	5.31522624252821	5.18601621945921	5.27098406576246	-0.0178021622924905	0.959780029701014	0.990242512723989
Merged-chr7-73532426-2	chr7	73531926	73532926	+	980.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B1_Mus2|SINE|Alu	9320.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.88905542830246	5.93928858584977	6.164874540023	5.92798034063422	6.06468951309772	6.12215654456567	0.0778230903883179	0.793409935760495	0.950406028169806
Merged-chr13-53219690-4	chr13	53219205	53220205	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013846, intron 1 of 8)	intron (NM_013846, intron 1 of 8)	66404.0	NM_013846	26564.0	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	4.70574363067229	4.69906905876385	4.60240578421627	5.09704060873684	4.7965204912328	4.97917489732974	0.642903007450191	0.106395857592248	0.435507010947255
Merged-chr5-130455238-4	chr5	130454647	130455647	+	890.8645630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	B4|SINE|B4	6355.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.82067113663423	3.61824938049333	3.96235218504737	3.93672437117472	3.98813180862293	4.2093766698484	0.751796192013525	0.150604853419338	0.517489620222838
Merged-chr9-118607368-7	chr9	118606968	118607968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	759.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.06564725462318	8.30021345442278	8.18444944650926	8.09284084580416	8.16428687137428	8.06235602084765	-0.110606754341554	0.601779072989499	0.88210751528777
Merged-chr1-92973075-4	chr1	92972554	92973554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-65.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	7.76190270270601	7.780029385066	7.7696722621382	7.86739035045613	7.9578588841276	7.6172208179441	0.0850558042920086	0.705879693707962	0.922834459892351
Merged-chr12-35066748-4	chr12	35066241	35067241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	Lx8|LINE|L1	19552.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.81308693272377	5.96887199814392	5.4638267863241	5.71834391889213	5.38623619985805	5.77982659371661	-0.269723701745313	0.439197992845803	0.801041444663502
Merged-chr3-52069435-2	chr3	52068935	52069935	+	668.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	35571.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.76892240111198	7.02691072237866	6.29159493964618	6.98832230511754	7.10661664753928	6.33070650719352	0.1867179311057	0.588579460790553	0.876564224256956
Merged-chr15-88509211-4	chr15	88508716	88509716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91086.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	5.84199550005384	5.77370378837856	5.32020469138792	5.80184913430055	5.69765093094459	5.54632720512537	0.0199202400400793	0.95379914200585	0.989446911725587
Merged-chr9-37047707-2	chr9	37047207	37048207	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	99615.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	2.41522737595087	2.34086736452588	2.39299803705326	2.07326847163723	2.15225847197365	2.06494569765488	-2.15899076127975	0.0265062749507232	1
Merged-chr4-12427762-3	chr4	12427279	12428279	+	833.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255764.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.29104525536996	5.20570651673569	5.17988830314919	5.07435642566085	5.35484335954619	5.17711682165625	-0.0272378885351857	0.939170725589757	0.986609421918463
Merged-chr11-61735512-2	chr11	61735012	61736012	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 9 of 11)	intron (NM_144806, intron 9 of 11)	-14713.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	3.31502827758739	3.31822121574185	3.49536620448883	3.51978929756253	3.32358392582204	3.61697413868859	0.423846145807629	0.47734723026316	0.823237639056184
Merged-chr4-147815482-2	chr4	147814984	147815984	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5696.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	2.68113691305674	2.89697023553346	2.65391321438715	2.71200843723864	2.70822358785666	2.91274109616794	0.124525626211874	0.867357631753237	0.969325012731494
Merged-chr5-77193441-4	chr5	77192939	77193939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	17766.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.72968057734135	3.6707226667527	4.1325106614494	4.4491943682553	4.66089859897238	4.80016858003603	2.25671979878069	1.05807589365384e-05	0.000421262982483427
Merged-chr9-7734538-4	chr9	7734072	7735072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29505.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	3.21817354901589	3.13703055081427	2.98954928140413	3.71417452081256	3.49107705471304	3.49578131568355	1.79377334212156	0.00640061712415627	0.0732474968596885
Merged-chr14-66179152-4	chr14	66178655	66179655	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	34669.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.90935315139504	3.06610870712343	3.28472787983476	3.45899063843255	3.00475335635402	3.24462713065738	0.66289653621742	0.334857812587994	0.725198429760335
Merged-chr12-102398664-4	chr12	102398159	102399159	+	707.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	41154.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.93832339214133	4.16898573581532	4.49271690450574	3.97341747003708	4.13966600271347	4.48192374778603	-0.00805606911403928	0.987613792556588	0.997223245230291
Merged-chr8-13907702-4	chr8	13907208	13908208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347316)	promoter-TSS (NM_001347316)	-31.0	NM_025785	66822.0	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	4.71705397028332	4.88967750173306	5.13323236013158	4.72805261426778	4.94425118358886	5.0356055953015	-0.0177036995203872	0.964799514450871	0.991662400850212
Merged-chr3-105816271-4	chr3	105815772	105816772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045845, intron 2 of 2)	intron (NR_045845, intron 2 of 2)	705.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	7.00011808441163	6.72197368290857	5.88287026695261	6.84956070165508	6.95529026445703	6.41049492274885	0.213122379726282	0.572101082203517	0.869795143026488
Merged-chr2-132112027-2	chr2	132111527	132112527	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33081.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.95589576183053	5.66463632820613	5.83330702697816	5.78900424013529	5.82262922081561	5.57126579186303	-0.14675777388355	0.644978818065079	0.900384153905866
Merged-chr5-137776635-2	chr5	137776135	137777135	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2269.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	2.23417875555183	2.20334887320564	2.51431511620449	2.33188858523359	2.13462295353396	2.40233615885732	-0.192524104290747	0.8258872097502	1
Merged-chr8-128725054-2	chr8	128724554	128725554	+	897.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 14 of 15)	intron (NM_010578, intron 14 of 15)	39400.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	2.89899485251477	2.81695540361028	3.07245197403694	2.61000957820599	2.5457097255951	3.03358778410498	-0.959323024976261	0.22312826953493	0.617957508168678
Merged-chr8-27058455-4	chr8	27057983	27058983	+	968.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15928.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	2.62630836735931	2.61104935430406	2.42075266779308	2.64361171597406	2.41874931700441	2.69085078350488	0.152600468249247	0.849774765938474	1
Merged-chr10-51454142-4	chr10	51453644	51454644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26468.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	8.37246125479215	8.1476918314999	8.04921293562325	8.19573754820454	8.68261821304047	8.1123444688627	0.229506228771994	0.370690394920581	0.754976657994487
Merged-chr1-58716800-2	chr1	58716300	58717300	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3514.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.13462124706546	5.16631779894979	5.31893726803483	5.15046563340857	5.08104017150317	5.26017547151905	-0.0898060095046397	0.800483811820408	0.952559374210415
Merged-chr16-33951094-4	chr16	33950610	33951610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15928.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.89019761230018	5.63438906870655	5.83455396741392	6.08253011388475	5.52066934150615	5.68980161792728	-0.00570360074072641	0.986726988972542	0.997073310870088
Merged-chr4-119540451-4	chr4	119539967	119540967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290696, intron 1 of 11)	intron (NM_001290696, intron 1 of 11)	806.0	NM_172699	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	7.44984438648821	7.4259506745842	7.45533727392959	7.5021513766993	7.14534118759962	7.18644540346763	-0.228675109564149	0.344601626861377	0.733171703901441
Merged-chr8-109691857-4	chr8	109691351	109692351	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	RSINE1|SINE|B4	1443.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	4.85059198399267	4.9050462822349	4.60068695177963	5.11420817152185	4.87000332546755	4.9495258452861	0.391551048808195	0.323855370274693	0.717120257969349
Merged-chr2-27763580-4	chr2	27763082	27764082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011305)	TTS (NM_011305)	52999.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.78687350822385	7.88552645948138	7.60196046792472	7.71643278630316	7.7818532927186	7.67725353861172	-0.0593303442815783	0.790715487938389	0.949584063682145
Merged-chr2-119050422-1	chr2	119049922	119050922	+	619.0	f0_balb.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	3303.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	2.64657480610367	2.60493336364032	2.73300357109631	2.65316227795267	2.60867106852294	2.55458696553787	-0.294187156719915	0.696628360255521	1
Merged-chr1-89069655-4	chr1	89069175	89070175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-740.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	7.02185187740959	7.17028840178845	7.20778465497512	7.23784288560604	7.20425578131699	6.98263984515242	0.0298650838779858	0.902284489543466	0.977439591001363
Merged-chr5-30958953-1	chr5	30958453	30959453	+	572.0	f1_c57bl6.idr	intron (NM_001294302, intron 2 of 7)	intron (NM_001294302, intron 2 of 7)	1374.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	4.21244839912289	4.00398245839098	3.960659339496	4.14191749770791	4.16769372655266	4.31195617330822	0.383216166489966	0.426413241384626	0.793775990271191
Merged-chr14-54426879-4	chr14	54426377	54427377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-32.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	6.59849339917668	6.77468577601067	6.63511106601659	6.65991202400886	6.70197506408834	6.36447379923091	-0.125708374433679	0.641198189323259	0.898831142174765
Merged-chr3-89295726-7	chr3	89295249	89296249	+	988.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14798.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	6.36304981619494	6.05531949130464	6.05596311865241	5.92716009823275	6.06493937473373	5.85093132056306	-0.365039291728295	0.227993180866817	0.622996177254149
Merged-chr16-65377317-3	chr16	65376818	65377818	+	644.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143311.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	2.51678909638223	2.90076503591676	2.74371311132129	2.70678780049793	2.5081022277137	2.49326834724052	-0.876430094601463	0.278253791186664	1
Merged-chr4-135940606-2	chr4	135940106	135941106	+	617.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024243)	TTS (NM_024243)	-5842.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	3.25272832979205	3.34230456323755	3.40895471398679	3.19997171961742	3.40608156434506	3.72982769596191	0.467381969037582	0.455404644729862	0.810916340573998
Merged-chr9-111044333-2	chr9	111043833	111044833	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	12911.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	2.5718330195908	2.4983376959185	2.80401448003781	2.7277747740402	2.74979746278961	3.36395771626846	1.76638836566728	0.0303403084955243	0.210432307184761
Merged-chr16-94569079-3	chr16	94568577	94569577	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1129.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	7.62128885349686	7.61001428578012	7.13904510731039	7.5171704676365	7.54885925078471	7.34464418587311	-0.0125428632404548	0.960858764909733	0.990386809359123
Merged-chr10-24950427-4	chr10	24949907	24950907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22937.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	3.36161255903466	3.65016187939034	3.61581925212269	3.39333670074159	3.68091001406862	3.83334282019651	0.338755811037248	0.567411740251886	0.867969410476678
Merged-chr17-86128452-4	chr17	86127950	86128950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 5 of 20)	L1MC4|LINE|L1	16725.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	6.88962805552618	6.66423262799182	6.57871351972734	6.15539689887865	5.90597041294495	5.73989820199534	-1.27043390743303	1.96117282869366e-05	0.000718561288991379
Merged-chr11-61730137-1	chr11	61729637	61730637	+	611.0	f1_c57bl6.idr	3' UTR (NM_001164242, exon 11 of 11)	3' UTR (NM_001164242, exon 11 of 11)	-9338.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	5.06528074009077	4.74666615347714	5.03438020317138	5.04861443867563	5.33572520962828	5.2313047667422	0.551573590928388	0.146436822762663	0.510394244878424
Merged-chr1-170576563-4	chr1	170576047	170577047	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	13302.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	4.54754482308936	4.16757189993195	3.79233665452424	4.04267101510843	4.21470167236945	4.03181614594793	-0.310307169333383	0.568567306866111	0.868611680411483
Merged-chr11-76586368-2	chr11	76585868	76586868	+	793.016663	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-8629.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.88653205530519	6.15439485247679	6.16188473355834	5.94060953925768	6.04190991153508	5.8846475923156	-0.185663020662855	0.535339604998664	0.853511885485043
Merged-chr4-63410783-4	chr4	63410290	63411290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7345.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.56740800014148	4.457864931974	4.59084632277778	4.5652418494273	4.64301395149346	4.35309817027453	-0.00127485213409371	0.997630712713314	0.999528673611673
Merged-chr11-98807343-2	chr11	98806843	98807843	+	651.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001361931, exon 8 of 8)	3' UTR (NM_001361931, exon 8 of 8)	-2465.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	4.16712053793241	4.08898396579743	4.11015351778063	4.58599424396496	4.33082641131726	4.36659255721288	0.831556460163988	0.070301782807809	0.34732637120723
Merged-chr19-3923045-4	chr19	3922552	3923552	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 2 of 9)	intron (NM_026316, intron 2 of 9)	6664.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	5.53529171289166	4.99011049967325	5.20420410250073	5.06581253708969	5.30135505945405	5.09798855212315	-0.204547490523735	0.597349974608083	0.88036091123097
Merged-chr18-38338431-4	chr18	38337913	38338913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011937, intron 1 of 6)	intron (NM_011937, intron 1 of 6)	580.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	8.12419193920982	8.64624764383554	7.72454229353907	8.12687333619324	8.33372141048144	7.76208103196724	-0.181000486743075	0.556242638142167	0.86357390983939
Merged-chr1-43817475-2	chr1	43816975	43817975	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	L1MB2|LINE|L1	10233.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	3.62256276430169	3.96912885395889	3.93122814445558	3.94085370142472	3.81490813299747	3.99984509945923	0.209290369229317	0.692368310145775	0.918653245800001
Merged-chr15-98830130-2	chr15	98829630	98830630	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016781, intron 1 of 11)	intron (NM_016781, intron 1 of 11)	1378.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	2.6815316822453	3.0061177799002	3.0133368285025	3.00946925436769	2.83359460527973	3.25185038886926	0.598190029612138	0.414989071709567	0.786115461363139
Merged-chr19-29248518-2	chr19	29248018	29249018	+	689.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-3285.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	2.24175380804407	2.14099764069184	2.34288002462426	2.07787183466544	2.1334329693875	2.15962294877569	-0.86404018578701	0.332060488051353	1
Merged-chr2-10049391-6	chr2	10048885	10049885	+	837.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-776.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	5.16477652199098	5.25883090215358	5.13063430929381	5.45531073423722	5.46026219176128	5.01197802376291	0.29987550264362	0.414233639111015	0.785695810082599
Merged-chr12-79144357-3	chr12	79143874	79144874	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	13586.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	3.61814310260513	3.82165272288659	3.55765797430382	3.06532931377047	3.12557232620661	3.11552884716952	-2.57250606312488	0.000170972389841399	0.00441058815616611
Merged-chr14-54752688-2	chr14	54752188	54753188	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	(CA)n|Simple_repeat|Simple_repeat	29198.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.29843516593127	4.36403728249479	4.75514083673811	4.62530821408902	4.61329531199118	4.33083621036437	0.150760287282707	0.741334348978465	0.934809943386314
Merged-chr19-37376298-4	chr19	37375820	37376820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-83.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	7.43759628007706	7.76295632655084	7.58367594081748	8.4562624408794	8.59061658479156	8.10771637786651	1.13838114572438	3.46670226830968e-06	0.000160611003530909
Merged-chr6-113751323-4	chr6	113750826	113751826	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	A-rich|Low_complexity|Low_complexity	-10645.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.61234649608825	6.51209568748316	7.11416148606609	6.88913636628794	7.05366797427145	6.88750328365568	0.289594180235866	0.313688649801619	0.708132564679568
Merged-chr10-44729613-4	chr10	44729118	44730118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-270870.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.72254220771344	6.45798565073145	6.54336154134893	6.4832955595642	6.68800219534262	6.20960263175829	-0.146781055729534	0.61151377280365	0.886146894079858
Merged-chr10-34089616-4	chr10	34089130	34090130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162937, intron 4 of 6)	intron (NM_001162937, intron 4 of 6)	6889.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	4.31846948467151	4.3077788048801	3.94926238240995	4.32238865792509	4.3287679902251	4.40657135735138	0.364498485660945	0.442581979214281	0.803284363641017
Merged-chr1-138138011-3	chr1	138137517	138138517	+	817.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	37109.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.61529168362378	5.59566818862624	5.62807921989952	5.66681731750807	5.42884562337705	5.74207616376155	-0.006592583692293	0.98379690049381	0.99644342633169
Merged-chr1-65177163-4	chr1	65176661	65177661	+	954.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1981.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	7.43206783379121	7.96699234711833	7.35566002837447	7.45238553014895	7.86601392015475	7.11074388945931	-0.141168885873831	0.650234580867195	0.902576889668442
Merged-chr15-76324683-2	chr15	76324183	76325183	+	831.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2714.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	2.81639118314601	2.71148592623705	2.90328762242545	2.7181839744183	2.78808005283266	2.66955808710278	-0.417146098279436	0.568823773111013	0.868755869257561
Merged-chr17-57359869-4	chr17	57359327	57360327	+	957.427734	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 1 of 22)	intron (NM_001355722, intron 1 of 22)	1141.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.62912163135821	6.94517364986309	6.95403850492785	6.76129753532132	7.13808073358229	6.64868362861111	0.0481830432534143	0.865767300663416	0.968641478520565
Merged-chr12-16580240-3	chr12	16579780	16580780	+	791.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 2 of 20)	intron (NM_001355598, intron 2 of 20)	9490.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.44255485750948	3.30299056829999	3.33724423216358	3.16989997264135	2.88282616907986	3.23976346117688	-1.13257062967709	0.0896777040073954	0.397904463021776
Merged-chr3-69223783-3	chr3	69223256	69224256	+	919.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027843)	TTS (NM_027843)	1337.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	4.68649762851104	4.76106280901532	5.2270317683905	5.14170214275965	5.17889653509603	4.80669616704843	0.346363541900803	0.405217425342548	0.780049815379569
Merged-chr13-37498210-4	chr13	37497737	37498737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152892.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.457844664426	3.45951157255444	3.09181562622935	2.79917338809987	2.72602518412168	2.84206908092631	-2.98407177293652	0.000188258331647743	0.00475693873663692
Merged-chr15-36282596-2	chr15	36282096	36283096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357631, intron 1 of 7)	CpG	551.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	7.04889786804408	7.47738220102608	7.35566691082641	6.9277698658201	7.00710896865902	7.30554817037226	-0.333729269488728	0.210594778459585	0.602769092283296
Merged-chr14-34502032-2	chr14	34501532	34502532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	CpG	514.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	6.40505627626326	6.59172392291402	6.34437226741356	6.78095183891554	6.3927413526125	6.34440152287319	0.108665194412123	0.707675320668552	0.923504801393744
Merged-chr12-116460581-4	chr12	116460083	116461083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133762, exon 29 of 29)	exon (NM_133762, exon 29 of 29)	-25137.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	5.09495020159993	5.69507074187456	5.43687901710553	5.86525333262231	6.03466425298776	6.08096853211423	1.01488701820537	0.003951128564488	0.0514580537789823
Merged-chr10-62219032-3	chr10	62218540	62219540	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	12178.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	5.90269434857226	6.08109884172958	6.14308841255496	5.51147397904812	5.43507078445322	5.46550126074856	-1.0408748903674	0.000882000542480306	0.016341460952728
Merged-chr10-81138339-4	chr10	81137824	81138824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2053.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	7.87076026804866	7.24262661179563	7.73718470327952	7.73442249711484	7.47026171989303	7.62569542984565	-0.0447364411795723	0.868161355287345	0.969642939011354
Merged-chr9-105648564-3	chr9	105648082	105649082	+	856.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081309, intron 2 of 19)	intron (NM_001081309, intron 2 of 19)	5587.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	4.07780319213073	4.27271103982167	4.17396449572133	3.27014053356257	3.36149205916899	3.54080258738269	-2.85797519444441	3.39010334142482e-06	0.000157676089182012
Merged-chr15-50827539-4	chr15	50827045	50828045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	intron (NM_001310481, intron 3 of 5)	61504.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.19884034444161	5.41085716855393	5.16947765464426	5.29142253155202	5.19374270314037	5.26684896243716	-0.045209750773364	0.897571410664687	0.976055448838318
Merged-chr11-75429200-4	chr11	75428701	75429701	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6578.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	4.71500044741169	4.70263868980856	4.82722988655653	4.6816904111191	4.65711656042832	4.78134901195293	-0.0976190082075317	0.806015397071253	0.954102910475772
Merged-chr2-174672690-4	chr2	174672229	174673229	+	865.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	29195.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	3.74502645229215	3.91218416173395	3.79906026003336	3.86154603132207	3.74210675635573	3.53864644763877	-0.311606631670207	0.567521725615976	0.868105736438667
Merged-chr9-119923506-2	chr9	119923006	119924006	+	815.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026236, intron 17 of 18)	intron (NM_026236, intron 17 of 18)	14052.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	3.7121247569462	3.43094468726967	3.81281449074674	3.82866091628317	3.90358899274937	3.61981917657689	0.463673069406509	0.411922191064506	0.784137658017569
Merged-chr3-100686897-1	chr3	100686397	100687397	+	646.0	f1_balb.idr	Intergenic	Intergenic	-1424.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	3.14839593252513	3.27439609252627	3.04911473154257	3.02835279840042	3.10766240090058	3.35002963200669	-0.00537436991110617	0.993495007429588	0.9986799625278
Merged-chr16-17759619-4	chr16	17759122	17760122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	1.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	5.76079885457297	5.65789007533355	5.74528711544883	5.64060057569977	5.24128524509195	5.50969045889729	-0.477032536395603	0.153740479498719	0.522823190212908
Merged-chr6-38871191-4	chr6	38870606	38871606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	5084.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.80746463048211	6.84290947569624	6.84556332660521	6.7452640446229	6.8637369922344	6.54648139245256	-0.149272722619168	0.561301930979391	0.865407801976397
Merged-chr16-35768954-3	chr16	35768462	35769462	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153550, exon 1 of 9)	exon (NM_153550, exon 1 of 9)	394.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	8.93092558458992	8.94832350345441	8.71128730526846	8.66457310869991	8.65354577834332	8.49418520659012	-0.361097389020088	0.0798158617302557	0.373590494619515
Merged-chr6-129237568-2	chr6	129237062	129238062	+	733.0	f0_balb.idr|f0_c57.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	483.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.60677615076101	7.29066990261251	7.3064468630922	8.02354684036897	7.98206339645947	7.7312113534209	0.73588976574583	0.0022761508354867	0.0341004606984475
Merged-chr2-122118419-4	chr2	122117922	122118922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145531)	promoter-TSS (NM_145531)	-36.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	8.12309748030765	8.54170503920496	8.09062124589453	8.23971472143022	8.48208920911745	8.18813055553674	0.0554436160166771	0.819887327379084	0.957355946345198
Merged-chr7-16274099-2	chr7	16273599	16274599	+	999.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136270)	promoter-TSS (NM_001136270)	-407.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	3.64273105057402	3.42736134500528	3.58229112878552	3.6371470665185	3.55457178716672	3.43015554370565	-0.0210987944806262	0.970665145840562	0.99351865396095
Merged-chr9-121299451-4	chr9	121299049	121300049	+	777.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	2047.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.0379163187722	5.04197341288559	4.73410681438812	5.52730506991088	5.72023472956836	5.05253496720809	1.04992173863748	0.00890076567197424	0.0928216536997988
Merged-chr5-36550329-3	chr5	36549761	36550761	+	795.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-19638.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.56914350890667	6.83755564398971	6.40027055054138	6.11163588259054	6.28429125207847	6.36411759928927	-0.600364200855235	0.036888306291194	0.236690483488407
Merged-chr17-71003392-2	chr17	71002892	71003892	+	861.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-859.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	5.90936579398157	6.00077703754515	6.39925538889581	6.58691805423075	6.94803153065101	6.70996551981646	1.0664388781853	0.000356424594950604	0.00802201181948874
Merged-chr8-123018595-1	chr8	123018095	123019095	+	551.0	f0_balb.idr	intron (NM_001081379, intron 1 of 12)	MLT1E1A|LTR|ERVL-MaLR	23689.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.33066947985017	3.4475374030492	3.39056389844628	3.3961742293152	3.34747074900255	3.2904793470155	-0.171351380427252	0.77374676613922	0.944182567561921
Merged-chr11-48787956-4	chr11	48787452	48788452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12408.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	7.39067812321329	7.20134383272678	7.07494529935422	7.66720741823656	7.55315248937972	7.49475621336573	0.500003296162891	0.0355219460801215	0.231366738899002
Merged-chr8-117263566-2	chr8	117263066	117264066	+	887.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	6547.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.13021383300406	4.40432980621841	5.27224931519924	4.9528695136905	4.73549292579243	5.15613832557282	-0.066071151439948	0.887356450784031	0.973836995667151
Merged-chr11-68475407-4	chr11	68474885	68475885	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-27634.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.7859491992647	6.6223335170821	6.79125321198812	6.43080315795335	6.30059202656795	6.43989171244219	-0.554287898726855	0.0348778866760935	0.22904432914833
Merged-chr5-76975840-2	chr5	76975363	76976363	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025691, intron 1 of 18)	intron (NM_025691, intron 1 of 18)	1162.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	3.87709014788032	4.11944597909585	4.08637973847535	3.96686419510934	3.78976294490185	3.9651514273489	-0.38316253959862	0.449326088336397	0.807732736152589
Merged-chr12-111676919-4	chr12	111676410	111677410	+	936.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1195.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	6.64738055642208	6.2855994136438	6.73703197265793	6.78763463324429	7.02982633533749	7.08217493939574	0.63742446257099	0.0221391550435589	0.172712808256558
Merged-chr5-5319975-4	chr5	5319479	5320479	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-53911.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.25443051059392	6.65296371480102	6.10867225311733	6.93687762534954	7.16474681513329	7.18306339807868	1.13297222061851	0.000109688150661107	0.00306684530921013
Merged-chr16-92787165-4	chr16	92786632	92787632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	38942.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.49196398760475	5.12202326009428	5.39943982381197	5.00461043634139	5.02740798967859	5.00957025266573	-0.679245743081728	0.0646999728600467	0.331479301874193
Merged-chr3-37654414-4	chr3	37654126	37655126	+	790.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14679.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	3.62663217919877	3.37284696215381	3.32974690837633	3.3122643187024	3.17883270884214	3.34433172587434	-0.702354622400415	0.255062757081309	0.652046992991896
Merged-chr18-32171976-2	chr18	32171476	32172476	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	B1_Mur1|SINE|Alu	8887.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	5.14026997447952	5.32067854164514	5.37138567517086	5.17254996971777	5.21333827866809	5.15026516919386	-0.192929486368274	0.583378232217632	0.874027439705511
Merged-chr9-118707761-3	chr9	118707361	118708361	+	718.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-3831.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.94365187729856	2.83380115824121	2.88936857866081	2.81438510029729	2.7222984789864	3.13367621210994	0.0245067134434831	0.972910549875226	0.993897323428832
Merged-chr6-146479398-3	chr6	146478845	146479845	+	912.4682619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	22878.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	3.21282728000131	3.14748594793755	3.19602215446716	2.73642768064098	2.63297845032583	2.97983849932457	-2.10218949291201	0.0057338739893613	0.0674447535915713
Merged-chr14-76114350-2	chr14	76113850	76114850	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3459.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	4.77629664266234	4.71106490012552	4.41995504608944	4.81794432589901	4.79778712765538	4.93627027202468	0.439492446146145	0.28639745126386	0.68363782585898
Merged-chr19-45074746-11	chr19	45074266	45075266	+	987.636353	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362398)	promoter-TSS (NM_001362398)	-475.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	7.54004806619978	7.80395312442815	7.62264763338742	7.73076410475487	7.84246005954523	7.77737956185496	0.177267575629637	0.429548513953081	0.795784671795164
Merged-chr11-80078160-2	chr11	80077660	80078660	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	2831.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	5.24975521780042	5.41241218293038	5.26195374442022	5.54240032227836	5.62314238542565	5.45150301884022	0.452308325860038	0.176662956146543	0.557127430636861
Merged-chr11-103132206-4	chr11	103131715	103132715	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1124.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	8.5442878473361	8.92932670326654	8.47629503710098	8.51412540426758	8.64141128221782	8.56930090156849	-0.130246310458729	0.567536790406321	0.8681128213561
Merged-chr17-69180063-2	chr17	69179563	69180563	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	20707.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.1232816312907	6.24798792206907	6.49983014976091	6.13126333706654	6.41798904566392	6.55878350636749	0.143193835183301	0.631147738942901	0.895056431502213
Merged-chr18-62183850-4	chr18	62183342	62184342	+	758.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	3742.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.63396247003461	4.31603977993223	4.46015989369679	4.38384059271161	4.5575335035722	4.76229541027527	0.230358490072565	0.603680105301765	0.882779111121936
Merged-chr9-98333384-4	chr9	98332875	98333875	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	36805.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.28644049978366	5.39697937053315	5.04624170207922	4.91282715579299	5.28111868888228	4.66191267005618	-0.541359701332541	0.193134240700652	0.580302074097341
Merged-chr1-169531536-4	chr1	169531016	169532016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-52.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	6.04455100000766	6.19806315767706	5.83821976219778	6.06681208395844	6.39538676549694	6.07221336627134	0.258636031480976	0.401469465131034	0.777568046382993
Merged-chr10-19506155-4	chr10	19505662	19506662	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152784, exon 3 of 4)	non-coding (NR_152784, exon 3 of 4)	11519.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	4.88405752454596	4.70165138033232	5.01859571349913	4.86091487810858	4.53515919955122	4.9121628235958	-0.222105462466204	0.59067632104065	0.877301111216348
Merged-chr11-34389717-4	chr11	34389224	34390224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025382, intron 1 of 3)	intron (NM_001025382, intron 1 of 3)	74902.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	4.50323710680222	4.41001466740088	4.315005512123	4.18366937868119	4.18283862017768	4.19783128807369	-0.613553129177006	0.17430442044768	0.553423314145592
Merged-chr10-80400468-2	chr10	80399968	80400968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-937.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	6.89266634747333	6.83833495740235	7.10316756423286	6.99270253408663	7.18121857420801	7.25482941396804	0.3091063555937	0.216497510461545	0.610014877730732
Merged-chr9-94362777-4	chr9	94362278	94363278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175303.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	6.02622211912551	5.94661842665231	5.91635764468559	6.13652899770743	6.19509351681283	6.41218555347672	0.476541489561489	0.100048433810879	0.421883870931215
Merged-chr3-139205722-4	chr3	139205244	139206244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198659)	promoter-TSS (NM_198659)	-149.0	NM_198659	381476.0	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	6.47768015756023	6.75845494940966	6.51084363296157	6.99390347890753	7.24278623798912	6.7600769797453	0.669339406038444	0.0162063386216585	0.140059931868609
Merged-chr13-33047651-4	chr13	33047139	33048139	+	912.345825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	20225.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	4.85321247916466	5.0778857233423	4.98850224506752	5.22930832381636	5.22327629515905	4.98050299256938	0.380157742009786	0.307873349734279	0.703919468897047
Merged-chr2-93597956-4	chr2	93597474	93598474	+	934.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44460.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.11042183905442	4.25463282281821	4.02046435741984	3.93264948483151	4.02950602603088	4.08956895193078	-0.351271010970288	0.470498954936642	0.819495618343931
Merged-chr14-14706642-4	chr14	14706046	14707046	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360513, intron 1 of 25)	intron (NM_001360513, intron 1 of 25)	3521.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.43288801665473	4.19085890470881	4.51796128542889	4.11706184399345	4.25163962911422	4.29455005256292	-0.428777773183973	0.355371427865149	0.74234292596097
Merged-chr14-31181835-4	chr14	31181339	31182339	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022656, intron 13 of 20)	intron (NM_022656, intron 13 of 20)	-13198.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.28021021520423	6.23085455359789	6.5537621956663	5.91413604102705	6.14947277670975	5.8808041039949	-0.60867044179447	0.0435653459108993	0.262365893187442
Merged-chr10-51518088-4	chr10	51517593	51518593	+	898.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	27195.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.79929615496978	3.98003949375035	3.99005516968958	3.60044750416097	3.59689730222767	4.38874713752134	-0.0350364161366895	0.953587552145744	0.989446911725587
Merged-chr4-133663544-1	chr4	133663044	133664044	+	553.0	f1_c57bl6.idr	intron (NM_001145956, intron 2 of 2)	RMER10B|LTR|ERVL	9103.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.85003610919991	3.76570102781362	4.20809741298597	3.15172497906825	2.92569243619101	3.42957156867906	-3.29604132853683	1.16799856243776e-05	0.000457134639620514
Merged-chr5-86172079-1	chr5	86171579	86172579	+	763.0	f0_balb.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	664.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	6.12189370637566	6.08194615010963	6.05349852657444	5.84015085481647	5.87608309099023	6.02509431423535	-0.30875763816251	0.287843280857308	0.685245511851696
Merged-chr15-68059987-2	chr15	68059487	68060487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	198869.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.04914761923388	6.93076622621724	6.66254273716448	7.08637309872587	7.16327074598456	6.78834334564175	0.201467626922984	0.454061115586403	0.810100289331925
Merged-chr8-22658105-4	chr8	22657506	22658506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4569.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	6.7535937958211	6.70347598221135	6.68323628273581	6.57999495614693	6.85307261105257	6.89159418918453	0.103693611577773	0.689191740883935	0.917319650405699
Merged-chr12-17680441-4	chr12	17679927	17680927	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10382.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.40186332533454	6.36113979793277	6.44366530438812	6.67294764866521	6.97755251102816	6.61006540803787	0.59649802887882	0.0279206525943334	0.1995552019472
Merged-chr16-23314150-2	chr16	23313650	23314650	+	618.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	(TTTG)n|Simple_repeat|Simple_repeat	23680.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.581315043348	6.59897814925147	6.83029022361952	6.44759146853842	7.04892037218456	6.90265425262722	0.250334843263029	0.391430815331273	0.770454068270913
Merged-chr10-54060023-4	chr10	54059511	54060511	+	978.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	15785.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	4.08387812719221	3.80073621790046	3.95236849612106	3.69531203601798	3.60528949912326	3.54721704546268	-1.09169499979932	0.0456083613368773	0.269702262107802
Merged-chr17-43055488-3	chr17	43054983	43055983	+	844.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	B1_Mus2|SINE|Alu	38928.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	3.60492160811021	4.03825510365936	4.18513521046633	3.46791259465987	3.17875777593772	3.36694872790268	-2.27443653581937	0.000385599037797568	0.00854914061738875
Merged-chr7-25786603-2	chr7	25786103	25787103	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 3 of 19)	C-rich|Low_complexity|Low_complexity	2130.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	6.43524749784732	6.70550396887977	6.5893629858133	6.91181062709228	7.23966389820182	6.42368483256927	0.520191256393005	0.0956839597682489	0.412414966298703
Merged-chr8-70630901-4	chr8	70630413	70631413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011819, intron 1 of 1)	intron (NM_011819, intron 1 of 1)	1182.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.01553242911481	6.67470166620133	6.04784833304539	6.89590293493002	7.25107192443534	6.28287699550453	0.358050580221668	0.562793876426842	0.865755360453189
Merged-chr6-122870641-2	chr6	122870141	122871141	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3916.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	5.22596737134599	5.31511555247901	5.23227917256835	5.10905553541591	4.94517495323512	5.32648818365506	-0.282459292582522	0.437259642128136	0.799848369002863
Merged-chr4-102543157-4	chr4	102542637	102543637	+	917.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-26923.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.31125773087546	3.06657099116693	2.9836761738824	3.23696271983751	3.10629221508525	3.23911447121385	0.252079130713261	0.703170937904838	0.922108924938678
Merged-chr5-67450306-7	chr5	67449789	67450789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-13609.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	5.64720018653619	5.94302882142198	5.54839220324417	5.37020165107255	5.02235546215629	5.20236183268193	-1.02555802909163	0.00388964757152586	0.0508751587788533
Merged-chr7-12903785-3	chr7	12903288	12904288	+	799.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001447, exon 2 of 3)	exon (NM_001001447, exon 2 of 3)	5979.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	3.3485940799433	3.33944781208989	3.45680727890985	3.09505909734456	3.11468382834199	3.52643754693304	-0.513846614428645	0.423818650532837	0.792272050905538
Merged-chr13-54822140-3	chr13	54821644	54822644	+	826.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32739.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.19073684124795	2.92216235570603	3.24064960738561	3.12973344290723	3.21090304400049	3.36579562414033	0.485170653154221	0.460981434259142	0.814802506471053
Merged-chr2-174437080-4	chr2	174436594	174437594	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1945.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	7.7625948753419	7.70466323466292	7.55414641105771	7.61492196344376	7.87039149056008	7.25434295255944	-0.091764783129768	0.724656219908805	0.929455493022176
Merged-chr1-140269133-3	chr1	140268589	140269589	+	747.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22832.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	4.17203538921082	4.01267018627428	3.75452589009558	3.82957676936305	4.03309334765961	3.71354584686663	-0.374410444991616	0.490480547743818	0.830053405840466
Merged-chr13-51734320-2	chr13	51733820	51734820	+	686.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	intron (NM_013660, intron 2 of 15)	59427.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.43511711205887	3.7391438663321	3.39657017575851	3.67500858109535	3.70314681758299	3.63963551293477	0.46242492449133	0.42502000762976	0.792849788025043
Merged-chr9-118671892-2	chr9	118671429	118672429	+	907.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 10 of 27)	intron (NM_133721, intron 10 of 27)	-39763.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.24103465292254	5.25817886130883	5.57680300765647	5.60362286389375	5.24143334284799	5.53089252077353	0.202344564419587	0.571332848181405	0.869428183241799
Merged-chr17-74018443-4	chr17	74017938	74018938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	Lx8|LINE|L1	29478.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	6.23497518780593	6.75691130517484	6.35072752166648	6.20644281240423	6.16948929003131	6.14196181797294	-0.497444957718258	0.098837283947185	0.419333642002316
Merged-chr10-81377781-2	chr10	81377281	81378281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019757, intron 1 of 13)	intron (NM_019757, intron 1 of 13)	589.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	7.18251577710566	6.69716178806135	6.65318679198255	7.23568290985116	7.1804698938211	6.85942830668327	0.353772221816119	0.220940669857466	0.61561513090473
Merged-chr5-144255998-4	chr5	144255362	144256362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_018772, exon 2 of 3)	exon (NM_018772, exon 2 of 3)	637.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	8.60912250921653	8.61822096762828	8.64302692829654	8.73363444862912	8.72866064432648	8.61911373604163	0.102026027210676	0.600901387955826	0.881855262262798
Merged-chr10-39134024-4	chr10	39133532	39134532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028006)	promoter-TSS (NM_028006)	9.0	NM_028006	71924.0	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	4.58020600937169	4.27135204877598	4.27212775936794	4.49452408486781	4.25821650622768	4.34087801625598	-0.0575669044528128	0.900094471427049	0.976728292075907
Merged-chr1-161809163-2	chr1	161808657	161809657	+	621.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20662.0	NM_010177	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	3.8582539954329	3.78810189863658	3.62296394060132	4.07712969125064	4.18343680662301	3.86421517477213	0.888845460229479	0.0927350433333822	0.405701265916025
Merged-chr1-52817796-4	chr1	52817303	52818303	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008384)	promoter-TSS (NM_008384)	-115.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	4.52025274626992	4.51619424521626	4.59794284305684	4.50819345900935	4.41854359366929	4.32024534357287	-0.303671041672684	0.478527715338765	0.823834402333981
Merged-chr2-150832320-2	chr2	150831820	150832820	+	543.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153781)	TTS (NM_153781)	10250.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.14758137298688	5.07839317143312	5.24931741859203	4.72517977180218	4.85505012328897	4.98740170520971	-0.647788532648386	0.0852094469853811	0.386402946468995
Merged-chr11-82869703-2	chr11	82869203	82870203	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	1041.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	6.75202361629608	6.64219735020467	6.52811742818591	6.81953770642282	6.89822491669123	6.26658877906028	0.0896608437971821	0.762764759011574	0.941663714620562
Merged-chr19-32754893-4	chr19	32754408	32755408	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2669.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.61976403102877	3.5553255715605	3.61551697606388	3.64787038454049	3.59038209190742	3.93134832880841	0.431744202137142	0.437471411759331	0.799971897010536
Merged-chr9-41084510-6	chr9	41084065	41085065	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5059.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.70722917309238	3.86037752524603	3.5401036545359	4.11646235862791	4.11047322715531	3.89580802437132	1.02947896187106	0.0570311344292338	0.307961213312976
Merged-chr9-119925447-4	chr9	119924929	119925929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028976)	TTS (NM_028976)	12129.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	5.48093538636636	5.30862676937019	5.23317264338805	5.32886990113497	5.06521763747601	5.09179213367048	-0.37274238397452	0.298326235059714	0.69500092474273
Merged-chr1-125558760-2	chr1	125558260	125559260	+	638.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1835.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	2.21608708905722	2.21670091093804	2.45586373643196	2.17239221602766	2.00977995828754	2.34322166172182	-0.843641514325877	0.35707499526579	1
Merged-chr13-9467431-2	chr13	9466931	9467931	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	190906.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.17476215024057	3.45160453667568	3.59823349641529	3.23305167407925	3.41279873413629	3.35176370056495	-0.300219503512678	0.631885645330068	0.895324662011483
Merged-chr10-60009771-1	chr10	60009271	60010271	+	616.0	f0_balb.idr	intron (NM_026937, intron 3 of 10)	intron (NM_026937, intron 3 of 10)	6444.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	3.46578668167273	3.25493785995694	3.22770221976642	3.0837143962659	3.06045339561575	3.29958178540645	-0.746948775860284	0.246046929569857	0.643182480464067
Merged-chr8-128558961-1	chr8	128558461	128559461	+	640.0	f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-126693.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.24713468047349	4.20927042884735	4.04434523843423	3.90035861065794	3.68089363538944	3.74970961837259	-1.21892726314728	0.0175549928515012	0.148004931759956
Merged-chr1-154118119-4	chr1	154117640	154118640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-83047.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	7.3340660865025	7.30517340504833	7.34894731694582	7.04071895208269	7.25927060101729	7.2613557656584	-0.204650695484792	0.382654023769214	0.764118986456982
Merged-chr7-128393077-4	chr7	128392576	128393576	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25096.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	7.57333112272663	7.56201445732734	7.53161080324273	7.48675112993765	7.56385023404586	7.63578732512031	0.00692407731455522	0.974865987707344	0.994382735882691
Merged-chr18-80704974-4	chr18	80704475	80705475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	3198.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.6250400561519	6.47429184924842	6.52033156337198	6.27662774132649	6.24331349731819	6.38067334091171	-0.401623137954923	0.133053356818604	0.488036310961533
Merged-chr9-57522390-6	chr9	57521929	57522929	+	900.0277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	1197.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	7.03218727495771	6.99002343279244	6.9627602728749	7.28746525220306	7.64985729283093	7.30016067349795	0.651086243657706	0.00895862488745649	0.0932485938998599
Merged-chr14-75231276-3	chr14	75230770	75231770	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001247984)	TTS (NM_001247984)	-11017.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	2.95183495180954	2.99040052001267	2.90242728761011	2.88736456172251	2.84724151630011	3.31277196396481	0.346896020809344	0.625693054470815	0.892569179591757
Merged-chr17-87984654-4	chr17	87984153	87985153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9603.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	6.74870781858641	6.69917277122149	6.73189168355005	6.66597826538163	6.80774703313039	6.83560617866353	0.0700018233847691	0.779760864688529	0.945903255857057
Merged-chr5-113635293-4	chr5	113634795	113635795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	8308.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	8.05023425867697	8.0508573025385	8.04250544581736	8.29047490164811	8.37792381621821	7.91375046107873	0.238656130912603	0.300499625766929	0.697311691851564
Merged-chr10-59886684-4	chr10	59886181	59887181	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	7090.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	5.90594603378428	6.03717183466509	6.03521225489993	5.81094425877869	6.22672949355642	6.02861791974161	0.0850367505948688	0.781747098878678	0.946284883776141
Merged-chr6-72414277-4	chr6	72413791	72414791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019802)	promoter-TSS (NM_019802)	-17.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	6.5886208446635	6.50289093952772	6.48719267339837	6.48510634676185	6.34123963612807	6.37969651589796	-0.205711123128962	0.436001906997252	0.799430009957291
Merged-chr2-131258279-2	chr2	131257779	131258779	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3729.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	4.90989969978901	5.04182230003893	4.88326706152281	5.40597139320219	5.71429918504104	5.34026396118243	1.12564401069177	0.00209607931852563	0.032007812063843
Merged-chr4-103340448-4	chr4	103339931	103340931	+	805.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	26585.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	4.8594050802771	5.00752769811139	4.95399119522923	5.05227304902979	5.29587942890761	4.82715431044586	0.311913319815801	0.423965751169878	0.792333561200576
Merged-chr8-18846301-4	chr8	18845809	18846809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	30.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	7.93821692347887	8.10413015351454	7.9166501069949	7.95208390847742	7.86443011850269	7.65381316534033	-0.224391930878064	0.317681178166267	0.711502260156078
Merged-chr5-134234382-4	chr5	134233902	134234902	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4777.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	5.34948319690046	5.25990020693895	5.65227500678711	5.40990433221785	4.7956081401932	4.87056808917826	-0.740563201829023	0.0700995760775968	0.346704580108005
Merged-chr8-70694816-2	chr8	70694324	70695324	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2915.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	4.33244604463325	4.09214228457559	4.42680504648455	4.34309250278117	4.49196646269003	4.72415213694228	0.613984701388377	0.181460057619986	0.563787133106409
Merged-chr8-117343758-4	chr8	117343282	117344282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-5388.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.04697181995568	8.11135465531254	7.77891027975198	7.87764140753507	8.23830533272242	7.66972118279243	-0.0447889434734857	0.861757721364814	0.967996224966109
Merged-chr15-97248474-3	chr15	97247969	97248969	+	870.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 1 of 5)	intron (NM_172293, intron 1 of 5)	-1182.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.91480772347266	6.10915172360351	5.91912158629266	6.04541773571404	6.07206635091122	5.66086510486475	-0.0623441727890433	0.842509240178707	0.963052887733571
Merged-chr2-90509425-4	chr2	90508927	90509927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-30253.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.10192561625046	7.21861836103722	6.55612872123874	7.12681268582437	7.28311190152082	6.70709395131555	0.105958698069825	0.732312226794703	0.931723932448277
Merged-chr10-44702275-4	chr10	44701777	44702777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-243529.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.86553692988373	6.16612003310071	6.11860118579583	6.09212640842945	6.31340746685619	6.02278065908986	0.17626777530885	0.55852386672935	0.864722646301276
Merged-chr10-17613464-4	chr10	17612968	17613968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-109760.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.45289001317198	4.45608108875822	4.76726043576831	4.38206262365161	4.46977466533939	4.25907278928859	-0.44511165571509	0.319605768761607	0.713540438213725
Merged-chr1-176075661-3	chr1	176075148	176076148	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	138294.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	4.22052257117216	4.32045315568898	4.04655385724241	4.23375247614964	4.09537529920988	4.16486104173106	-0.126112201366049	0.789906165191312	0.949311112850285
Merged-chr11-58330681-4	chr11	58330171	58331171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161338)	promoter-TSS (NM_001161338)	-36.0	NM_001161338	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	6.9701777910239	7.41273403965572	7.04673588202526	7.25372523885089	7.44787056714473	7.1047098300797	0.178264500506666	0.504872990054654	0.83787689489943
Merged-chr12-59132734-4	chr12	59132232	59133232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	1279.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	6.66673690433234	7.11543837980116	6.84538383382802	6.95074395455085	7.4663673653772	7.23312978719601	0.523696093326051	0.0651175352178932	0.332770809074109
Merged-chr5-142906794-4	chr5	142906324	142907324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-70.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	7.35264963125318	7.38267627318471	7.30358774211534	7.67158249243014	7.81149769338783	7.74651290361333	0.578984761636425	0.00875012722746024	0.0918018643730314
Merged-chr8-70214852-2	chr8	70214352	70215352	+	872.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2571.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	3.08073698218674	3.13649532346625	3.31205395268543	3.45092884246392	3.61176554099821	3.44005305433968	1.34752962058683	0.0297070193711294	0.207569917286725
Merged-chr18-36726700-4	chr18	36726197	36727197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009841, exon 1 of 2)	5' UTR (NM_009841, exon 1 of 2)	118.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	8.30569220657388	8.59830153277259	8.19745359672753	8.26332618343737	8.72487412168631	8.06843404673024	0.0126480986805159	0.962147638637185	0.990763104917838
Merged-chr7-80018821-6	chr7	80018363	80019363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5951.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.15925467076563	5.89719021477938	6.40893715172383	6.49772032691606	6.52148819058922	6.17227657380027	0.421374011429622	0.170257062033253	0.547613050547466
Merged-chr4-86576465-3	chr4	86575895	86576895	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178376, exon 1 of 1)	exon (NM_178376, exon 1 of 1)	722.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	6.02854902346425	6.2693547183809	5.85303197469713	5.85933951850696	6.16582689740702	5.63740188276488	-0.256829962109053	0.441877395788357	0.802999352423289
Merged-chr13-80960712-4	chr13	80960201	80961201	+	967.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3373.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.19784635038855	4.27662861842443	4.56039371853132	3.88881708075214	4.31642912607638	4.26001711187389	-0.470403998297753	0.344335378578385	0.732980075743821
Merged-chr2-91201465-2	chr2	91200965	91201965	+	626.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1447.0	NM_001357067	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	4.46526399916928	4.90627327968113	5.1836243098053	4.77287356633855	5.26108810523676	5.05554064450005	0.37311563060511	0.400930145698026	0.777074737677701
Merged-chr5-64485134-2	chr5	64484634	64485634	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	8126.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	3.53429593577943	3.38985731292648	3.58286062118568	3.85348288364505	3.58229988800981	3.75781387259644	0.809615857429597	0.151624346401961	0.519079091424247
Merged-chr13-97254908-3	chr13	97254414	97255414	+	790.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13809.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	2.25291711096343	2.18553624826242	2.3910447658267	2.17545493169328	2.20597042421141	2.20705613708119	-0.552601476265084	0.522829433110482	1
Merged-chr14-29969173-3	chr14	29968658	29969658	+	594.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019979, intron 1 of 4)	B1_Mur2|SINE|Alu	778.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	7.09695211418514	7.28892983956614	7.025921015049	7.16745283130475	7.2669383895597	6.60842598556991	-0.131218817746909	0.647131827123962	0.901197407051558
Merged-chr13-95958942-2	chr13	95958439	95959439	+	640.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029210)	TTS (NM_029210)	-67017.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.81942251454822	3.70063764169755	3.77803868915467	4.20371565452791	3.87137418779649	3.90123433658544	0.731242088491312	0.162473575394293	0.53589809574695
Merged-chr3-79491842-4	chr3	79491347	79492347	+	956.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 10 of 16)	intron (NM_001162999, intron 10 of 16)	75832.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.32544061990518	5.18747410459341	5.09389497601561	4.88805374960718	4.78390346432134	4.74355690548034	-0.867843853612593	0.0210488710239499	0.166946378816207
Merged-chr16-33684810-2	chr16	33684310	33685310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175256, exon 1 of 15)	exon (NM_175256, exon 1 of 15)	344.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	7.27285209479319	7.11376745767153	6.96241641956045	7.33979665039849	7.13490405053798	7.15408053621748	0.125659829240026	0.61073084584161	0.885788604162257
Merged-chr5-118464625-2	chr5	118464125	118465125	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96094.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.23168511599317	2.92843622781026	3.05164171290095	2.95914123550902	2.78738954204719	3.12395901471586	-0.554832259546271	0.430199645787346	0.796150673085838
Merged-chr9-120577322-4	chr9	120576838	120577838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	7.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	7.87370089527299	8.10559045762085	7.69562016883326	7.79558076463391	7.92060062894643	7.59024268895889	-0.182314254782737	0.452642322788629	0.809456767794566
Merged-chr17-73041142-4	chr17	73040666	73041666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-66819.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.52899626933377	6.12560098627494	6.40970254138293	6.21062828033622	6.54710164797732	6.09972477199827	-0.0839575919691143	0.785516794870196	0.948034368002426
Merged-chr1-64447162-2	chr1	64446662	64447662	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85642.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.05725370240068	3.22286444279697	2.95188628036914	3.24834891859445	2.92446400073014	3.32027642585818	0.362285466379287	0.599878150313588	0.881284193782591
Merged-chr13-41634583-6	chr13	41634026	41635026	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163572, exon 3 of 3)	exon (NM_001163572, exon 3 of 3)	28310.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.3471298617975	3.23250173866	3.75343603794678	3.41545211038682	3.29532326632896	3.30796981257438	-0.435657907938266	0.490339316568791	0.830042606694236
Merged-chr14-20835092-2	chr14	20834592	20835592	+	707.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1570.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.90307788482555	5.94714930676335	5.13998756210487	5.31121397324984	5.35238389065028	5.13106279186708	-0.856955754018326	0.0296692086613422	0.207385375864664
Merged-chr15-84923787-3	chr15	84923361	84924361	+	987.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	CpG	433.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	8.01591480643512	8.19099628193407	7.9117244545046	8.13549525337979	7.89523775708236	7.9202905666946	-0.0860293237972743	0.701933813771314	0.921616258659442
Merged-chr13-112395971-2	chr13	112395471	112396471	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68099.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.38611157538985	5.78076221265885	6.0157662894534	6.1204380676223	6.26610055120875	6.42077561371281	0.304632936033636	0.346618220522021	0.734734183510397
Merged-chr14-33190937-4	chr14	33190464	33191464	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5898.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	4.4722172815302	4.26886563187382	4.40290276608825	4.15668281906794	4.38371009313641	4.51070568560774	-0.073268258190919	0.872059473380248	0.970261003150518
Merged-chr7-45467545-1	chr7	45467045	45468045	+	568.5	f1_c57bl6.idr	promoter-TSS (NM_007527)	promoter-TSS (NM_007527)	-647.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	2.77438954126193	3.09118783819094	3.16311202190838	3.17901482560742	3.09553199643754	3.1781466752151	0.587686517951456	0.394141330578132	0.77206906441863
Merged-chr9-54578552-3	chr9	54578048	54579048	+	843.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-7963.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	4.12891863062773	3.87311384857034	4.04095453721405	3.94183416305561	4.48172328084089	3.73498488486784	0.251120760272096	0.657738965198689	0.904859102731141
Merged-chr9-50659598-4	chr9	50659091	50660091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145614, exon 1 of 14)	5' UTR (NM_145614, exon 1 of 14)	189.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	6.30974893862958	6.23673425258107	6.55704599432172	6.74090025621712	6.64869527035242	6.56523089470924	0.469864552683163	0.0831193416066855	0.381505377849687
Merged-chr2-129800550-4	chr2	129800034	129801034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183262)	promoter-TSS (NM_183262)	17.0	NM_001038635	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	6.7428859221479	7.46891571078211	7.04064096837194	6.86014291844748	6.79090454664135	6.73571845331796	-0.501238540889601	0.0891417971680853	0.396669258680404
Merged-chr9-120941094-3	chr9	120940594	120941594	+	644.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	L2|LINE|L2	7516.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	3.627533278699	3.46456214055913	3.56422906999643	3.37289565228196	3.05678524817004	3.24277279313247	-1.30492426658537	0.0382494001607464	0.242008675277575
Merged-chr7-63930280-4	chr7	63929782	63930782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	8633.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.82882994791209	5.63833787299232	6.15401332937391	5.95058446252441	6.24619153082253	6.4003354610003	0.567948050359421	0.082049501788679	0.37892961896167
Merged-chr18-62054195-1	chr18	62053695	62054695	+	666.666687	f0_balb.idr	Intergenic	Intergenic	101120.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	3.25082904552947	3.13540471864665	2.91721859461724	2.63044139188828	2.5000016272294	2.66454918905461	-3.18257324333442	0.000330423806138913	0.00754912247699251
Merged-chr3-89801644-4	chr3	89801125	89802125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28016.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	7.0280104326665	7.36370359327953	7.20896263186505	7.02022809030804	7.38019204462685	7.03834925720112	-0.0638150224472529	0.807909292687352	0.954583809755663
Merged-chr18-4347058-3	chr18	4346510	4347510	+	775.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5943.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.59562106345847	5.8995087046849	5.60708456860015	5.90508731355903	6.00048051661213	5.75328351523305	0.325668798726825	0.307938864346694	0.703947279446131
Merged-chr9-72468944-3	chr9	72468373	72469373	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	23086.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	4.02251846065302	3.87935067986201	3.81592803731213	4.08852327127702	4.13533296558006	4.08898644881723	0.56930932782871	0.249536650692712	0.646453676354781
Merged-chr1-161998943-4	chr1	161998460	161999460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-6009.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.91205563802743	5.77668607985926	5.79707638119196	5.4218463640405	5.54241258640609	5.44459682319633	-0.658651997877255	0.0377240114458505	0.240137273590206
Merged-chr2-112448698-3	chr2	112448195	112449195	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6330.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	5.32164945307563	5.46396945576894	5.55881205277172	5.05554139671634	4.91286461169878	5.34197657267395	-0.700063738701358	0.0552388276439756	0.302090855773902
Merged-chr9-110459330-4	chr9	110458809	110459809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	MER58B|DNA|hAT-Charlie	17385.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	6.81465797126098	6.91497480749878	6.92859757311682	6.77518146696062	6.86243208271309	7.01325171315911	-0.00417916874697067	0.986575944312123	0.997063455776714
Merged-chr17-47601301-2	chr17	47600801	47601801	+	720.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016859, exon 7 of 7)	3' UTR (NM_016859, exon 7 of 7)	7834.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.1039133335088	3.28133196957031	3.22296821468228	3.40976397018301	3.38007517701222	3.90344558401811	1.42802619458411	0.0271010839483983	0.196055207196863
Merged-chr12-91676111-4	chr12	91675609	91676609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-85622.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	3.50475167044082	3.3678111671149	3.05005460975743	3.36126645845249	3.27059562715512	3.36948164645462	0.0163789591682822	0.979867456521586	0.99537077988876
Merged-chr2-16228302-3	chr2	16227792	16228792	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-128012.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	2.96863967809268	3.02046886200932	3.26285838600968	3.09907047074827	3.24461070449739	3.22327541524026	0.470076018609524	0.472752894187971	0.820550293768681
Merged-chr17-33916017-4	chr17	33915495	33916495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-181.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	5.35961043178056	4.91568730227707	5.44068222496705	5.61074408892692	5.39403146682718	5.41583994068093	0.445563906987945	0.229166477396525	0.624625428681258
Merged-chr4-35065708-3	chr4	35065202	35066202	+	744.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-86353.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	2.89868295012226	2.93761166103252	2.96885533429916	2.56970905174042	2.9472844575205	3.15272563844738	-0.113299355516995	0.884524443500551	0.973510728214101
Merged-chr10-59222684-4	chr10	59222187	59223187	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024911)	promoter-TSS (NM_001024911)	765.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.79038420149546	7.79911668257469	7.8295159306985	7.90226702086338	7.99056453266091	7.94880154262205	0.204856352047905	0.328157092594869	0.720352041691366
Merged-chr1-56089691-3	chr1	56089189	56090189	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70711.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	4.36308187479201	3.99843307474894	4.44704957266733	3.42104215592157	3.36865366107363	3.52475231148264	-2.95415961687258	1.52178376851416e-06	7.82599405503869e-05
Merged-chr4-150001474-1	chr4	150000974	150001974	+	733.0	f0_balb.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	1762.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	3.96706321317349	3.66524925510795	3.93202790152445	3.59344190763207	3.48873494576075	3.85803475862462	-0.707054467756675	0.207812365964699	0.59868364609575
Merged-chr3-94612925-2	chr3	94612425	94613425	+	596.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011656, exon 13 of 13)	3' UTR (NM_011656, exon 13 of 13)	-30209.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	5.50322249359366	5.49044169139247	5.50569038373197	4.81512470988601	4.65588435037783	4.48453742250253	-1.77591306174926	4.50180234369411e-06	0.00020227531099408
Merged-chr13-51316471-3	chr13	51315969	51316969	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-92149.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.87999604307382	3.53453653182728	3.64484948692861	3.69688563049942	3.45943597136627	3.55167603391477	-0.436102192510747	0.446941937746059	0.806159145464037
Merged-chr10-25317862-2	chr10	25317362	25318362	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-18699.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.59955940755906	5.75479233075143	5.8756217469889	5.18076952199396	5.4631225644711	5.58997634525283	-0.609163770791647	0.0734656970740359	0.356127802046978
Merged-chr11-120824456-8	chr11	120823939	120824939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007988, exon 1 of 43)	5' UTR (NM_007988, exon 1 of 43)	108.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	7.41768509473437	6.92791316879239	6.5697637480879	7.09861018569446	7.05203246151561	6.29698823084998	-0.234250297694892	0.512773801861467	0.84210398297292
Merged-chr7-99978217-2	chr7	99977717	99978717	+	953.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	PB1D10|SINE|Alu	2241.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	5.03636976012046	4.78056485796194	4.93394327211298	4.83417627955935	4.84369924653923	4.99844945488985	-0.070508796773085	0.855128562001042	0.966077464114792
Merged-chr4-137837990-4	chr4	137837468	137838468	+	915.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.33871306219117	5.1866818334914	5.47260168499247	4.67066215494824	4.44109145041888	4.72023080726728	-1.6078757897263	4.63989489244886e-05	0.00148205901808401
Merged-chr9-61056001-2	chr9	61055501	61056501	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38932.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	2.57054520981507	2.50231268132794	2.78881210390771	3.01257478707226	2.81430396225989	2.92336741456652	1.62614881018195	0.034463048215536	0.227458714231486
Merged-chr9-107313412-3	chr9	107312918	107313918	+	966.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16759.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	5.07280065478235	5.13114110425086	5.04548247818927	6.53389541322835	6.48482267284115	5.85798006447097	2.28422735455028	1.17482143106466e-10	1.55908359866074e-08
Merged-chr7-123346101-3	chr7	123345564	123346564	+	714.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	23851.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.47592025729807	4.38665642702661	4.44960611074323	4.39574010385321	4.43935434171989	4.47415689848644	-0.00366644099130112	0.99318462725222	0.998651348330892
Merged-chr6-15753414-2	chr6	15752914	15753914	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	32753.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.10808769808757	5.16099985957051	4.80232416776662	5.06871032509842	5.09459612671453	5.19612002368028	0.150932755070976	0.688023107440692	0.917193226920892
Merged-chr17-34317068-2	chr17	34316568	34317568	+	716.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010382)	TTS (NM_010382)	-8607.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	2.80709375601958	2.65851301588534	2.9845871715063	2.89200461720301	2.91197903983008	3.32675798008227	1.11591380959551	0.130984673107286	0.483655758340434
Merged-chr11-3178115-2	chr11	3177608	3178608	+	984.916626	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	15355.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.71306696165847	6.42248538947086	6.57453719398154	4.28599986627465	4.01000031300522	6.84722164750928	-0.756371328626811	0.730495242347859	0.930884711548651
Merged-chr11-22990922-2	chr11	22990422	22991422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009837, intron 1 of 13)	CpG	329.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	7.57747625024583	7.75996584226904	7.28078814955532	7.30338017984811	7.3988492454223	6.95051007285842	-0.471535092508226	0.0794463253351923	0.372693782602869
Merged-chr15-100495934-2	chr15	100495434	100496434	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-695.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	4.51721564188384	4.59996490722373	4.18740467335447	4.72407103279537	4.63707092824285	4.58442088835638	0.46667587142609	0.291528795177651	0.689134317873353
Merged-chr8-115428214-4	chr8	115427708	115428708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	278686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.50467262588637	6.39636794156244	6.40847878556456	6.42806017058417	6.47669314234275	6.20600862551855	-0.0873388182196941	0.749187469937439	0.93719392324485
Merged-chr5-32053641-4	chr5	32053095	32054095	+	760.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-82877.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.76294217864816	2.85260016272921	2.84648982916972	2.96734681992359	2.90022501851224	3.15261836428966	0.897578930467037	0.199326367915202	0.587746298743231
Merged-chr1-157141230-4	chr1	157140742	157141742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 17 of 17)	intron (NM_177644, intron 17 of 17)	-32562.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	7.259373594756	7.4490122013938	6.90772240305636	6.6762825954069	6.56639713693353	6.33133062799674	-1.06957485312382	0.00015362324820968	0.00405670683498287
Merged-chr4-42999879-4	chr4	42999365	43000365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009503, intron 1 of 16)	CpG	642.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	8.47027073959445	9.0602336945182	8.4646593818928	8.4992395343476	8.64999245296458	8.63098218936841	-0.149091465115066	0.554917442851852	0.862989905297353
Merged-chr14-77343921-4	chr14	77343416	77344416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 3 of 19)	intron (NM_001253759, intron 3 of 19)	162952.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	7.06249541910193	7.09062318415035	6.93433463582944	6.59689130457933	6.53728137780874	6.53387861897554	-0.746288040989069	0.00268426111451035	0.0387024777016423
Merged-chr6-146619680-3	chr6	146619178	146620178	+	997.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 5 of 11)	intron (NM_026281, intron 5 of 11)	14914.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	5.23570686997005	5.32490537471841	4.8052972031461	4.10127395971232	3.86556347038085	4.40500968780922	-2.60372288648368	7.11235066150512e-08	5.24623650466503e-06
Merged-chr8-126563872-4	chr8	126563376	126564376	+	917.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29560.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.18388761729257	5.15975527225817	4.82596732546534	4.89780975974485	4.96578166987504	4.81230505307469	-0.384092805685027	0.320811993771812	0.714576061099323
Merged-chr16-16073966-2	chr16	16073466	16074466	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	72885.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	6.10879965515283	6.18382552432861	6.25066587115984	5.97222211184183	6.28432276840329	5.93613970297034	-0.155848985973569	0.601338312172581	0.881933867638998
Merged-chr1-91253711-2	chr1	91253211	91254211	+	739.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	3145.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.37060031128541	3.83242974212203	3.55516605930543	3.42158618903889	3.30484899430496	3.57254848829952	-0.629369789623643	0.301467419350204	0.698200786354329
Merged-chr7-39517219-1	chr7	39516719	39517719	+	802.0	f1_balb.idr	promoter-TSS (NM_001004139)	promoter-TSS (NM_001004139)	-547.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	5.44709237412972	5.30795862518664	5.39249482951467	5.52908660118945	5.45630898542689	5.45572500553287	0.189666444580527	0.565683850921123	0.86688237163883
Merged-chr11-83608205-3	chr11	83607719	83608719	+	814.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-15132.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	4.65755930824768	4.88082327051844	5.1216173003338	4.91743994264665	4.50824331433929	4.9219514415301	-0.234377782830532	0.583497433856319	0.874062789752135
Merged-chr17-79348094-2	chr17	79347594	79348594	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026514, intron 1 of 1)	L3b|LINE|CR1	6997.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	2.75299974874653	2.77314135814232	3.10667233360522	2.7980506729217	2.60065453335104	2.83644235174324	-0.698774607214573	0.350976799131367	0.738927106247438
Merged-chr18-35119746-4	chr18	35119239	35120239	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009818, intron 1 of 17)	intron (NM_009818, intron 1 of 17)	827.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	6.2470375548582	6.30810594381321	6.19248982025087	6.57045379690373	6.57554111844267	6.57590218756212	0.52099886479364	0.0488933013195178	0.280922097513771
Merged-chr2-35623199-3	chr2	35622703	35623703	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290641, intron 1 of 15)	intron (NM_001290641, intron 1 of 15)	1222.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	3.32337971910569	3.26517193591615	3.55825533502329	3.27973678376767	3.1716409047304	3.31048109887699	-0.521341056335651	0.399474784223737	0.775862421121533
Merged-chr7-113208281-4	chr7	113207758	113208758	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357070, intron 1 of 19)	CpG	793.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	4.62712894488925	4.93170133132558	5.00528393933811	4.72480228968319	4.85465262185943	4.96747675544806	-0.0221720874816525	0.956087907489723	0.989807313282509
Merged-chr4-89351697-4	chr4	89351196	89352196	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40664.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.44444245651756	4.17823706922904	4.10119585751534	3.7639742617417	4.20672382890286	4.02231133222927	-0.664576744624081	0.201190743405481	0.590750207399366
Merged-chr4-83266572-4	chr4	83266086	83267086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	57603.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.45231702348126	6.53720953411165	6.49001332763452	5.8328486889366	5.84842805768049	5.96484810569438	-1.04103841811774	0.000193380206151157	0.00487304064004404
Merged-chr16-18836649-4	chr16	18836168	18837168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033164)	promoter-TSS (NM_001033164)	88.0	NM_001033164	72307.0	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding	4.52275612704074	4.57870612731999	4.27656966066769	4.31505743916579	4.15415582112769	3.99589248732343	-0.828578524115944	0.0803071008231773	0.374965206495505
Merged-chr9-106229394-1	chr9	106228894	106229894	+	699.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	6796.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	5.0822953672448	5.43399574124072	5.57168136628834	5.14069769533849	5.20217395292355	5.65828572611116	-0.0561474010563948	0.884342256318034	0.973466734537782
Merged-chr14-66238729-2	chr14	66238229	66239229	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-24905.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	2.75648974719054	3.11678871348085	2.99907203590886	2.86392607108803	2.951821965499	3.01244207386147	-0.114368471588116	0.871669789087693	0.970247743403815
Merged-chr8-26023910-4	chr8	26023438	26024438	+	927.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_207659, exon 22 of 22)	3' UTR (NM_207659, exon 22 of 22)	-8337.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	4.85737383533848	5.42650539412387	5.42465932033092	4.73743446063581	4.53402044796517	4.60233992576685	-1.39417544520581	0.000983294591961819	0.01777106351172
Merged-chr16-27387887-4	chr16	27387375	27388375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	7.24217849151139	7.14916580987875	6.8020480001314	7.04963912504643	7.28330060787615	7.29924624573887	0.191085166928675	0.463994902798004	0.816083364095972
Merged-chr11-48817282-6	chr11	48816751	48817751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145377, exon 1 of 6)	5' UTR (NM_145377, exon 1 of 6)	140.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	8.07003680652674	7.80019205063655	7.85451222039031	7.88511912450493	8.07729461858272	7.89463411901657	0.0621287484145292	0.782290601359759	0.946484752418558
Merged-chr2-128770371-2	chr2	128769831	128770831	+	833.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47972.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.84214303258666	4.66606361602458	4.49747481847974	4.64585992490022	4.47202332449821	4.33415263124061	-0.457267181473288	0.293797919726309	0.690424156263798
Merged-chr2-35174291-3	chr2	35173784	35174784	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 39 of 43)	MTD|LTR|ERVL-MaLR	26836.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	5.64070505586661	5.62199351738166	5.95277070037658	5.67187536895444	5.85692686375767	5.43894347464084	-0.105427168813782	0.75530571877558	0.939269406300643
Merged-chr10-111721201-4	chr10	111720692	111721692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126919.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	4.35953068419079	4.31444877910266	4.59067456232723	4.37916156130999	4.49573343480779	4.32137300535288	-0.0277391544578422	0.950266734144444	0.988409495539718
Merged-chr9-15010469-4	chr9	15009975	15010975	+	972.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	35003.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	4.64627080745861	4.3663773037103	4.22564760800642	4.3246977087779	4.27592047800262	4.38693770509816	-0.278013577876799	0.544088987763291	0.857551302506722
Merged-chr7-143044696-2	chr7	143044196	143045196	+	862.6666869999999	f0_balb.idr|f1_balb.idr	intron (NR_110355, intron 1 of 4)	MT2A|LTR|ERVL	-8054.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.15832673527185	5.09046582046274	5.32144742065014	4.9047431205382	4.79308396705119	5.23555332591475	-0.445106821348476	0.246665006473228	0.643782025373544
Merged-chr3-81036824-4	chr3	81036328	81037328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019971, exon 1 of 6)	5' UTR (NM_019971, exon 1 of 6)	412.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	7.72304192202571	7.86181025122138	7.67249434394835	7.63921055294584	7.70646121239785	7.30100007540621	-0.271242512368801	0.258717800104666	0.656251800083823
Merged-chr18-46524436-4	chr18	46523976	46524976	+	936.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173423, exon 2 of 3)	exon (NM_173423, exon 2 of 3)	1495.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	7.96777999878827	8.34656749707134	8.04061764312099	8.22444823397842	8.46996568447317	8.05978696975101	0.191224484355517	0.430122123025164	0.796105989515053
Merged-chr10-40525608-3	chr10	40525108	40526108	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44754.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	4.86998304885271	4.62342661263998	4.93463229158785	4.7122151181345	4.68848890350348	4.57808756488717	-0.335604675946389	0.411634882496769	0.784017205335022
Merged-chr2-34610591-4	chr2	34609965	34610965	+	917.880981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 10 of 11)	B4A|SINE|B4	144767.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	6.78649694753467	7.13711917400808	6.91139919871175	6.71591459628208	7.00885268316202	6.91295830660635	-0.106166287270636	0.688611386185089	0.9172299553909
Merged-chr10-10474436-4	chr10	10473949	10474949	+	858.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-2135.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.46121088575734	4.65167522532024	4.75166060562618	4.64448479132729	4.72987509653843	4.74156442853828	0.202159339453854	0.622771489919489	0.891249034616027
Merged-chr4-43418039-2	chr4	43417539	43418539	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	ID_B1|SINE|B4	11095.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	3.06023890791311	2.92492185009001	2.92833362170911	2.64275877896721	2.59537122919957	2.62168045284847	-1.98523258009229	0.0104845641302338	0.10382001810645
Merged-chr8-13661042-1	chr8	13660542	13661542	+	1000.0	f0_balb.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	16545.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.0379286012791	7.02467340499811	6.86942077868304	6.78688044934857	6.69971299948589	6.60842439599669	-0.4350961041195	0.081643746300912	0.377936736701323
Merged-chr18-30087456-3	chr18	30086947	30087947	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185418.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.33807065055524	4.25502621033555	4.02110062715898	3.44671940469392	3.35143922719488	3.42643660378983	-2.91621130702939	1.6384769236266e-06	8.33339779102213e-05
Merged-chr5-90778548-3	chr5	90778049	90779049	+	645.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6114.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	4.25745769342979	4.17118930820925	4.31146093942389	3.87901763290945	4.01431562768893	4.01398227378865	-0.788111408496428	0.102376842800004	0.426739421686342
Merged-chr16-36658222-2	chr16	36657722	36658722	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MD2|LINE|L1	7855.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.68515794713087	4.08065841712267	4.27806775379189	4.26613192764311	4.40668182870264	4.56024275714077	0.0865314577905685	0.859586442431511	0.967383530375476
Merged-chr10-20077731-2	chr10	20077216	20078216	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71204.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	5.90619812781292	5.72718920520798	5.36300251223716	5.17781171371957	5.04094609972079	5.04215178129845	-1.18981842753373	0.00100752417496602	0.0181262857406644
Merged-chr17-56030368-2	chr17	56029868	56030868	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	6269.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	4.23133277036058	4.17438510053916	3.89081584093372	3.73290075130935	3.63005341422536	3.69052875419538	-1.37072796245224	0.00979781901179176	0.0990472558601002
Merged-chr14-63146116-1	chr14	63145616	63146616	+	572.0	f0_balb.idr	TTS (NM_007798)	TTS (NM_007798)	23654.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.11363393625298	5.46147433817117	5.53056127650059	5.14971512494727	5.13301595066599	5.24310000524924	-0.408252428166538	0.260016463537289	0.657579648868986
Merged-chr11-58104519-4	chr11	58104014	58105014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	CpG	285.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	7.79150922224144	8.06665386231931	7.83332755104424	7.66704356630695	7.76403136361183	7.7551140714206	-0.253284679610435	0.257659987540751	0.655089012134593
Merged-chr8-84967660-1	chr8	84967160	84968160	+	563.0	f1_c57bl6.idr	Intergenic	Intergenic	-1649.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	3.06264050532748	2.85702864163728	3.16746331981365	3.10245587021106	3.14419368191705	3.18245950547371	0.501784026038745	0.451298002180714	0.808957790071745
Merged-chr13-49653416-3	chr13	49652908	49653908	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025495)	promoter-TSS (NM_025495)	330.0	NR_073167	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	6.59525287736002	7.3770065021658	6.99861107805329	7.2458567852422	7.28639825209927	6.72175373865154	0.122811865870763	0.703527018177281	0.922108924938678
Merged-chr19-40695496-2	chr19	40694996	40695996	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	35726.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.75914261411899	3.49633141880262	3.97109566742086	3.96633384442632	4.12587132988522	3.89387006588511	0.80464810291856	0.140321196887862	0.50067889935277
Merged-chr9-59734021-4	chr9	59733510	59734510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001172071)	TTS (NM_001172071)	16639.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	8.2007844759067	8.46837871262228	8.18536253412875	8.11856315223784	8.64590935844432	7.78017452321338	-0.070282920936167	0.805958287770166	0.954092065739731
Merged-chr11-96917886-2	chr11	96917386	96918386	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1372.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	2.80273815787536	2.62517037372666	2.74111739539924	2.73239603746999	2.67125137002887	3.1585813485464	0.709578274282347	0.351887784862776	0.739540280937106
Merged-chr3-107084724-4	chr3	107084209	107085209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16858.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.50254843543079	4.69344448714964	4.52737962230895	4.67460697167583	4.41571027932669	4.93169874722323	0.233605038902635	0.594896752261153	0.87924603206665
Merged-chr5-113873120-4	chr5	113872601	113873601	+	949.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	35605.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	4.34732043266609	4.29831670949458	4.10502556391949	3.67070834943295	3.49046633942651	3.65182186554684	-2.14773312630663	7.66620410823451e-05	0.00226603734080986
Merged-chr6-124835678-2	chr6	124835178	124836178	+	623.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013530, exon 9 of 10)	exon (NM_013530, exon 9 of 10)	4597.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	4.923204444956	4.89349572696124	4.68898471439901	4.16422144856842	4.43097955148089	4.27051515485351	-1.33475673991221	0.00257076518569208	0.0374817293798959
Merged-chr1-80722482-2	chr1	80721982	80722982	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	MLT1A0|LTR|ERVL-MaLR	36071.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.8439874855171	4.12705481707044	3.94593528739761	4.11053516623127	4.18615228623221	4.01591974338644	0.37828789825417	0.44686425786417	0.806128589015974
Merged-chr11-74663828-2	chr11	74663328	74664328	+	618.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081158, exon 12 of 26)	exon (NM_001081158, exon 12 of 26)	14333.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	3.47041849912932	3.10656481039637	3.37362220846798	3.15746859687446	2.99564151531591	3.16565959482646	-0.956893374684071	0.147423008392267	0.512321096600569
Merged-chr16-32003186-4	chr16	32002678	32003678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177103, exon 1 of 10)	5' UTR (NM_177103, exon 1 of 10)	109.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	8.64468545956185	8.77225905469661	8.29023836375285	8.38907778879978	8.41677367270247	7.851153214638	-0.469600803414351	0.0749429148778917	0.36034961347354
Merged-chr7-35062961-2	chr7	35062461	35063461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-6395.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	2.61507796002761	2.50360989041491	2.86316652706409	2.72595354206441	2.77452486967587	3.20976522443284	1.29070853872412	0.102640194266746	0.427236732425048
Merged-chr17-10312195-3	chr17	10311685	10312685	+	660.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	7176.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	4.14906642876873	4.40725581595385	4.5917415218068	4.64646138224146	4.3469407755414	4.32108678026291	0.154762125955874	0.739761294210855	0.934245371298156
Merged-chr15-8637347-2	chr15	8636847	8637847	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 9 of 9)	B2_Mm2|SINE|B2	73460.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	4.04694127979908	4.06461620954622	3.71046993589652	4.56412061325638	4.63289296571017	4.17784821122843	1.4190566974899	0.00670467239049741	0.0757374939273023
Merged-chr10-80149536-4	chr10	80149019	80150019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	-163.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	8.06584537637296	8.20095087754733	7.81856768054629	7.75460366638955	8.22133794277612	7.77034233154588	-0.142368480485058	0.578183900337273	0.872387001636785
Merged-chr7-73568007-2	chr7	73567507	73568507	+	960.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9612.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	3.35928037591665	2.84821026277231	2.96340378837111	3.43120320036103	3.42083363976228	3.28936619153818	1.23745927179016	0.0858380083585233	0.388005813088148
Merged-chr6-134115787-4	chr6	134115292	134116292	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	80092.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.77108523728265	5.57741556147951	5.69565785022111	6.35312008905168	6.23226630818253	6.62618829978181	1.24280156385244	4.94769904144581e-05	0.00156833577844047
Merged-chr13-58115425-4	chr13	58114930	58115930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1783.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	3.08399083494397	3.16870755095094	3.01165669034673	3.08205368647744	2.97382791222103	3.3669860241539	0.22233235433065	0.740740437037539	0.93466471983834
Merged-chr19-10294746-6	chr19	10294254	10295254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	10123.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	7.07205926762501	6.76118837390858	6.97994623948587	6.68264600615768	7.02102237627307	6.76260146147515	-0.160956247369961	0.54789839423797	0.859455567919717
Merged-chr1-87326875-4	chr1	87326387	87327387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110212)	promoter-TSS (NM_001110212)	-111.0	NM_146112	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	7.18718235166225	7.29645323756181	6.85704902017006	6.99311951246391	6.85555953673555	6.7911866100527	-0.383667847961541	0.142212700057624	0.503446333443608
Merged-chr9-122123290-2	chr9	122122790	122123790	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	5831.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	4.72061909272094	4.97968023088098	4.82298476682798	4.66240455706591	4.79781789484873	5.06223461587017	-0.0117016943392084	0.976945790010917	0.994769134402338
Merged-chr4-127042899-2	chr4	127042399	127043399	+	740.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18255.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	6.49373927655621	6.29494882268433	6.76666315570181	7.19933204431365	7.15584018845805	7.12341762553637	0.993652782902736	0.000174662692760453	0.00448559670963326
Merged-chr4-88433568-4	chr4	88433073	88434073	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	5353.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.02246630305852	5.29983062429665	4.98864026455862	5.31250839428863	5.71772387628159	5.20096264554311	0.647676838824981	0.0916178808622567	0.402988879356487
Merged-chr11-97101935-2	chr11	97101435	97102435	+	770.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019507, intron 2 of 5)	intron (NM_019507, intron 2 of 5)	13396.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	2.37389685313421	2.2726187235909	2.25795850480187	2.44300448877293	2.35292040624227	2.58799293741335	1.01744692591222	0.226136966656588	1
Merged-chr16-58482796-4	chr16	58482260	58483260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	MLT1J|LTR|ERVL-MaLR	40666.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.34690826369462	6.10314973148613	6.48562667699991	6.1455621005074	6.12392349619777	6.35073899205007	-0.184014047977965	0.529261192664683	0.850847288056475
Merged-chr14-75788019-2	chr14	75787519	75788519	+	734.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-982.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	4.35771257931083	4.32664152750253	4.2738291175193	4.11893005887457	4.23681063167361	4.50803564815901	-0.0874100715685358	0.849904433478593	0.964746847431705
Merged-chr12-3892123-4	chr12	3891600	3892600	+	910.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	356.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.31685654027205	7.3844094376338	7.53506146858933	7.18981140066862	7.36641275537479	7.26741682269178	-0.193950445474078	0.407126145427302	0.781312613790187
Merged-chr19-8941105-2	chr19	8940605	8941605	+	732.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-815.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	3.24580046711371	3.19132531094557	3.38738073703062	3.45299864939226	3.07382735699272	3.40416366142814	0.170775888922547	0.788974973559474	0.949092571737679
Merged-chr15-75894428-4	chr15	75893947	75894947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172607)	promoter-TSS (NM_172607)	34.0	NM_172607	223646.0	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	4.38192725586331	4.77942424968762	4.84780344687979	4.73785494136224	4.47703277525665	4.65096859891386	-0.138339543222481	0.751967105922858	0.938030338790992
Merged-chr13-14036571-3	chr13	14036109	14037109	+	901.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	L1_Mus3|LINE|L1	3029.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	4.01493106867674	4.28874135241607	4.59284502944864	3.91655731594116	4.02954877149918	4.58541083596817	-0.296680052233601	0.583096460001376	0.873907285988058
Merged-chr9-58979253-3	chr9	58978755	58979755	+	851.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 4 of 28)	intron (NM_008684, intron 4 of 28)	57186.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	3.12883136600723	3.26589702026871	3.19761483080454	2.94704134241738	2.82080844638004	2.97543602913497	-1.36148287320004	0.0463868302864311	0.272537548233249
Merged-chr17-6781329-5	chr17	6780722	6781722	+	854.896667	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	1558.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.0774213070092	4.73882721583041	4.68917826925058	5.07158418654265	5.12135242875449	5.02810843691345	0.478254139399836	0.223169736209364	0.617980066590216
Merged-chr5-96856769-4	chr5	96856266	96857266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63381.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.75765099215214	5.28373141712067	5.67037747455594	5.06612065433799	4.79744147829406	5.22397337144985	-1.11538981356192	0.00352911446245297	0.0474471734031001
Merged-chr6-97483478-1	chr6	97482978	97483978	+	661.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	B4A|SINE|B4	4342.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.88579804377456	5.60037352041835	5.95976647829986	6.40531223036892	6.30852992027333	6.40879287436032	0.952013898892986	0.00131597757930061	0.022333237287058
Merged-chr12-3238016-5	chr12	3237541	3238541	+	806.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015551, exon 4 of 7)	non-coding (NR_015551, exon 4 of 7)	2250.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	4.80189874674981	4.42870065479467	5.0932425969776	4.97148480254615	5.20764372982898	4.84201147582102	0.509797487463643	0.239848150847533	0.636770540094307
Merged-chr13-34078878-6	chr13	34078470	34079470	+	872.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-962.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	5.12809829537765	4.81510591944083	4.49995357218149	4.87048023910422	4.70591975716238	4.74331042835503	-0.175537914347277	0.683061951310778	0.91523316791368
Merged-chr2-49239144-2	chr2	49238644	49239644	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 7 of 16)	intron (NM_029924, intron 7 of 16)	-6756.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	2.92648754945214	2.94432662731754	2.88131708915442	3.1002792366385	3.2602759245122	3.07948831999281	1.07569571730436	0.111187252660925	0.445419833321467
Merged-chr14-7994285-4	chr14	7993750	7994750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007870)	promoter-TSS (NM_007870)	-68.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	4.88238676852601	4.61822468817032	4.94840728530833	4.82593895524656	4.81760839055562	4.45063331434724	-0.224406501711764	0.59693313334605	0.88011264230803
Merged-chr9-121636009-2	chr9	121635509	121636509	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5584.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	3.29554957019699	3.61341011692086	3.49427274604266	3.45482901813068	3.24045378040873	3.90526066399585	0.29230390500503	0.64898131801499	0.90203687479147
Merged-chr11-120573116-4	chr11	120572603	120573603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011032, exon 1 of 11)	5' UTR (NM_011032, exon 1 of 11)	150.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	8.16429171655718	8.26440041935759	8.02671708457896	7.95080036351602	8.00364569728591	7.73128133586076	-0.357981648837369	0.107808432511702	0.438592091743691
Merged-chr11-69678824-2	chr11	69678324	69679324	+	697.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163571, exon 3 of 11)	exon (NM_001163571, exon 3 of 11)	3146.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	4.79206192606139	4.59105459899233	4.90543632704427	4.60495699430034	4.64925454551196	4.90037749387316	-0.10578090103758	0.797665796610131	0.951799370596145
Merged-chr12-24492728-4	chr12	24492230	24493230	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	4.72600244781592	5.04276321581401	5.18051404030169	4.82440200630789	4.83470935845409	4.71670925264388	-0.425471561579185	0.290710868355582	0.688530967042335
Merged-chr5-140795051-3	chr5	140794546	140795546	+	977.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35385.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.24287760807053	5.36727108335001	4.85042447714209	4.11248000738963	4.0630091957203	4.19948568060029	-2.65452348600894	7.78998243925861e-09	7.26669124221783e-07
Merged-chr16-33191072-3	chr16	33190464	33191464	+	912.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	5893.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	6.36993270186704	6.31833199310829	6.29561159454014	6.32904830846278	6.53744394320052	6.31567234521896	0.125123915354953	0.647056821776505	0.901159400806897
Merged-chr17-26572810-1	chr17	26572310	26573310	+	581.0	f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	L1M2|LINE|L1	11298.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.36769155900185	3.34406049728457	3.14900091969385	2.86247298708428	3.04100680866357	3.04005866514781	-1.38441261831107	0.0427957749280889	0.25938364556538
Merged-chr2-32237268-6	chr2	32236714	32237714	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145145, intron 1 of 19)	intron (NM_145145, intron 1 of 19)	531.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	5.27219604338256	5.16293855997547	5.45269043430503	5.20355983498828	5.61286253364659	5.57018293248081	0.360683202951866	0.313234203751298	0.707836272539716
Merged-chr18-52468277-3	chr18	52467796	52468796	+	956.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026040, intron 1 of 7)	intron (NM_026040, intron 1 of 7)	2603.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	3.31516561915914	3.30921516760751	3.67127234527352	4.27922882588317	4.46418232933851	3.85657719411795	2.7626842068174	6.46865717822295e-06	0.000276305968421753
Merged-chr4-55508894-2	chr4	55508391	55509391	+	980.166626	f0_balb.idr|f1_balb.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23584.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.7779181978293	3.9492916267353	3.72675168114141	3.30904260461602	3.31357452501608	3.53049033312945	-1.63295349340002	0.00544203485197608	0.0650230953422209
Merged-chr9-65232667-2	chr9	65232167	65233167	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177460, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	17977.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	3.13658277646563	3.30145609287643	3.60055097044747	3.35937820950256	3.30341857346	3.51908865535307	0.155367012681093	0.804686651410546	0.953651704501661
Merged-chr2-58157148-4	chr2	58156646	58157646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2976.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	6.89145025764447	7.04897781291919	6.93974058417634	6.7699304269192	6.90570433887956	7.15070455380015	-0.0278192501445401	0.913614374131002	0.980756595579247
Merged-chr14-120323214-4	chr14	120322642	120323642	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	16690.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.04044657347561	3.81153917128107	3.68257740535326	3.85127810667197	4.19558599760214	3.81087997010952	0.349217630101835	0.523652585005853	0.848362770949337
Merged-chr10-16994650-2	chr10	16994150	16995150	+	718.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	101132.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.95780074452344	3.86173468345898	3.97913619992031	4.29329830860517	4.15697715792681	3.83940034806681	0.547258549550177	0.282254663135078	0.680177416378801
Merged-chr1-36960315-4	chr1	36959817	36960817	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20790.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.21439985790091	5.03785376796432	4.83636358188571	5.03948272300237	5.32571580502474	4.90359236749184	0.141608372348267	0.719670459662251	0.92793360927861
Merged-chr17-34257842-4	chr17	34257340	34258340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5387.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.67811905670693	6.39053915363204	6.41291978931824	6.79834113578986	7.37482934075956	7.09384754756646	0.950162683944524	0.00101469985969011	0.018222157281695
Merged-chr2-71043192-2	chr2	71042692	71043692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12414.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.60025657396592	6.23342585038817	6.23065670996817	6.57771348151855	6.59225890365569	5.87816527371154	0.0516466574303368	0.878070326702461	0.971816559882595
Merged-chr11-115712590-4	chr11	115712118	115713118	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4021.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.11643218442084	5.2070465090719	5.51337858653034	5.2444935356116	5.02354275426729	5.3544099569315	-0.153372411066344	0.679779167166024	0.914056754309378
Merged-chr7-7171757-1	chr7	7171257	7172257	+	543.0	f1_balb.idr	intron (NM_146179, intron 1 of 3)	intron (NM_146179, intron 1 of 3)	404.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	4.33721865450552	4.6658004386889	4.58642855690847	4.47717715567274	4.62635593281254	4.44223469293205	-0.0307709706074523	0.943817113418292	0.987495247303971
Merged-chr1-106172821-7	chr1	106172349	106173349	+	971.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133821, exon 1 of 17)	exon (NM_133821, exon 1 of 17)	980.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	6.30229718564284	6.27094624389944	6.40410739557777	5.90029209842209	5.77892286436676	6.19980976632138	-0.623442164396585	0.0363650718244424	0.234654970569023
Merged-chr14-57665063-4	chr14	57664560	57665560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-104.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	7.01617526334638	7.16560138303565	7.51057385071978	7.26888598552228	6.87708295671811	7.29492696405612	-0.129121641695638	0.642132751281883	0.899352614913166
Merged-chr10-13201959-4	chr10	13201505	13202505	+	944.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8868.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	4.93549065877031	4.84783207794824	4.53800536558463	4.72711387963719	4.95233991339547	5.13435402234789	0.328310210983421	0.428849585097026	0.795557738579824
Merged-chr15-63613293-4	chr15	63612775	63613775	+	930.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133667.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.19903205906633	5.5412013624233	5.36648320171694	5.70866194249983	5.97275388425605	5.58198775234755	0.741839394670723	0.0315303815702461	0.215102755245113
Merged-chr14-15062931-4	chr14	15062459	15063459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242144.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.29244255141069	6.62266083299415	6.41442363144919	6.86549707877233	6.94362439335218	6.43533852595829	0.520222734952235	0.075292463844881	0.361310983862213
Merged-chr12-40575194-3	chr12	40574701	40575701	+	835.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1MB2|LINE|L1	129148.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.92997014260749	2.59895045416909	2.98611202768945	2.58723646510442	2.78513366606346	2.8850205594805	-0.454997213864232	0.554987129849865	0.863036725359714
Merged-chr13-74245682-4	chr13	74245179	74246179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-36979.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	5.54192911440501	6.17783099007241	5.51737072323254	5.03551284159512	5.37569822467408	5.0395593965456	-1.1862630016873	0.00290845001513205	0.0411505371295881
Merged-chr17-13010122-4	chr17	13009628	13010628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	2289.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	5.29071647816234	5.03964539640518	4.85688931798082	5.36183413669332	5.50798486115848	5.38276866087906	0.675085157256484	0.0666301027238044	0.33729741360603
Merged-chr10-80591031-2	chr10	80590531	80591531	+	822.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-690.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	4.17590781819653	3.64733678078348	3.81731916437146	4.15279015324536	4.12381008633156	4.13897714182769	0.68184896924286	0.200498434251096	0.589549569480713
Merged-chr4-107066878-4	chr4	107066323	107067323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175471)	promoter-TSS (NM_175471)	43.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	6.33006612847545	6.422389485172	6.22802152114502	6.35174587571871	6.3388818305035	6.11358356190413	-0.0898545551395192	0.747939933934326	0.936880860325556
Merged-chr12-72761095-4	chr12	72760584	72761584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-127.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	9.07870637323421	9.18653232460854	8.67622465012055	8.90756261645006	8.87037209810755	8.63466440684752	-0.262192550204347	0.262129835549958	0.660009964678367
Merged-chr7-16175824-2	chr7	16175324	16176324	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277988, intron 1 of 12)	intron (NM_001277988, intron 1 of 12)	429.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	5.03577527853432	5.19634375578525	5.13089894457514	5.55619605172589	5.3719187128258	5.19595699771037	0.534323304302546	0.134085113942575	0.489554811800515
Merged-chr19-56776280-3	chr19	56775745	56776745	+	885.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37438.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	5.22154808035111	5.40229468014828	5.54828232128454	5.01881393965244	5.07401281041204	5.55779532170087	-0.329099412402911	0.386653150904289	0.767131316757601
Merged-chr17-45579048-4	chr17	45578542	45579542	+	763.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5781.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	3.63104458687152	3.48680377385274	3.72821514393483	3.06407010021832	2.84681706083256	3.33408691846055	-2.30908760515579	0.00127944126853447	0.021826039891153
Merged-chr10-95330879-3	chr10	95330377	95331377	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5399.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	3.97244380208284	4.00562882528207	3.86630276719784	4.0848820491532	3.98397994527516	4.08511802096454	0.281732538050397	0.5667165613739	0.867595459569954
Merged-chr7-95830077-4	chr7	95829571	95830571	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-341173.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	4.52540743973445	4.62820384292677	4.3246855638909	4.14075545129315	3.52185392698762	3.95389521726873	-1.74266853653563	0.00152863735667581	0.0250482192151007
Merged-chr1-152597639-3	chr1	152597156	152598156	+	899.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	27561.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.9621245242159	6.0068282118086	5.89582588719489	5.77642826427322	5.87130726865761	5.61198285016781	-0.33872009243276	0.267221282479357	0.664581053738824
Merged-chr2-165920500-2	chr2	165920000	165921000	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-35662.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.63933030765792	3.67194845319162	3.79139126881301	3.46741395639488	3.566946901238	3.99378156274403	-0.0408212751611629	0.943614047978406	0.987453245208137
Merged-chr18-20784888-4	chr18	20784388	20785388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38484.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	4.97383481733859	4.79898980766682	4.60779888550714	4.60123237351867	4.7147533514736	4.40411849235009	-0.512371259880441	0.230574881104885	0.626381219532661
Merged-chr7-60004372-4	chr7	60003832	60004832	+	827.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082962, intron 2 of 10)	intron (NM_001082962, intron 2 of 10)	867.0	NM_001349694	20646.0	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|SMN|sm-D|snRNP-N	small nuclear ribonucleoprotein N	protein-coding	3.89828198089669	3.95274953654085	3.78307919516994	3.80557984247741	3.77935988080253	4.09481638388335	0.0230304695575464	0.964825120522625	0.991676469995016
Merged-chr1-192736150-3	chr1	192735634	192736634	+	611.988892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 4 of 11)	intron (NM_144881, intron 4 of 11)	35085.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.39973381516188	2.55895150720149	2.62379926618328	2.3471961734431	2.44997486680847	2.63614512268032	-0.292154584742897	0.718760423029248	1
Merged-chr12-80945467-4	chr12	80944952	80945952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	-47.0	NM_001347416	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	9.20145032372613	9.47984441745215	8.83153248136039	8.93608571192511	9.30887456267916	8.98891497300622	-0.151752990484336	0.547735273607129	0.859437236400189
Merged-chr10-57628762-4	chr10	57628250	57629250	+	898.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3231.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	3.76802327192051	3.50444926561663	3.63909174957518	3.31535804704819	3.21810517749562	3.85356392985539	-0.550761714086752	0.388236618172687	0.768201096854203
Merged-chr8-13874337-2	chr8	13873837	13874837	+	761.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_181854, intron 1 of 1)	RLTR13C2|LTR|ERVK	4696.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	3.97265619563353	4.01241997293319	4.02288321450929	4.10472548179055	4.11665358206215	4.22925233791392	0.424075576463807	0.374438489494894	0.758087520776938
Merged-chr14-25488514-2	chr14	25488014	25489014	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	29329.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.43079809578206	3.46486662039155	3.46268597274744	3.29420081085026	3.4465518107638	3.2479550468821	-0.4347509143696	0.470190244822662	0.819351047381472
Merged-chr10-71362592-3	chr10	71362109	71363109	+	667.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14846.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.88630201751895	6.37979314438469	6.30791025664111	5.82261734178039	5.76917896699609	5.60064704144362	-0.814977845523234	0.011965573143942	0.114047126020748
Merged-chr16-24964519-4	chr16	24964017	24965017	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-95122.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.12201542897942	3.03876462127671	2.69837566042741	3.09609846038855	2.87478512289487	3.03446255576532	0.154034123776101	0.836235095107108	0.961960888484752
Merged-chr2-145885968-2	chr2	145885498	145886498	+	755.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028724, exon 13 of 13)	3' UTR (NM_028724, exon 13 of 13)	-17243.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.49954359986128	4.80603170741555	4.97577856952416	4.48810417058162	4.75974177497735	4.64008204807037	-0.300078567342778	0.486777744521144	0.827985697457807
Merged-chr4-134926355-2	chr4	134925855	134926855	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2730.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	4.68843096693873	4.65214498705634	4.69351684954559	4.99516672101492	5.08118653863191	5.24706780310645	0.951846346879051	0.0132919411988595	0.122476751846967
Merged-chr8-90953828-2	chr8	90953328	90954328	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	21579.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.85157822397306	4.05642113178422	4.30194022354906	3.98039281565864	4.2271416161556	4.4869937470482	0.465990898921243	0.363895721045582	0.749357676652347
Merged-chr1-60662667-5	chr1	60662143	60663143	+	855.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83745.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	5.71452504398629	5.68290623617972	5.99856746170852	4.9635961868717	4.80521119202436	5.03284464678323	-1.73796925717463	1.18514493860277e-06	6.29716092281349e-05
Merged-chr15-86168750-4	chr15	86168251	86169251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16977.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	9.01924746259943	8.94698318282726	8.45788289016974	8.80354833083422	9.03371064168835	8.52439555438704	-0.0378730910803488	0.88311393520765	0.973347392063704
Merged-chr12-84773083-4	chr12	84772573	84773573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	39.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	7.65927781449031	7.84783922901592	7.3969404868724	7.72498880537387	7.93315086734045	7.53992116753564	0.135975605145409	0.591391578700227	0.877579413986918
Merged-chr2-170185320-2	chr2	170184820	170185820	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42645.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.58933726145404	5.88061439519718	5.67137509426075	5.99693777611641	5.71718572094294	6.00398085333574	0.323924074777968	0.312943588632173	0.707573438844213
Merged-chr18-58530596-4	chr18	58530098	58531098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25642.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.50192766265808	5.80892826706852	6.09849448763698	5.44527522685563	5.49594623735201	5.86088605090473	-0.387868203919648	0.277110510562816	0.674343034039447
Merged-chr13-12569921-4	chr13	12569412	12570412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	4029.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	4.58396480514677	4.77178574567081	4.34944101510416	4.43905923954477	4.49246940831582	4.71328740628228	-0.106496003652011	0.809255768411749	0.954721853010197
Merged-chr9-90200508-3	chr9	90200057	90201057	+	756.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001326294)	TTS (NM_001326294)	37579.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	2.55351829977523	2.65250018563284	2.72689343278122	2.83422719616919	2.54354748896053	2.86059154955478	0.567685842757563	0.457192137330812	0.812100660981603
Merged-chr10-61476246-2	chr10	61475746	61476746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153542, intron 1 of 4)	intron (NM_153542, intron 1 of 4)	413.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	4.68679075234602	4.59122129968055	4.40440426372068	4.65984045855818	4.6121118540455	4.90963445169238	0.35697825056735	0.399918016123724	0.776248940201881
Merged-chr3-27710519-4	chr3	27710005	27711005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-53.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	8.55498106414847	8.52310177078531	8.28194949153291	8.41937759808453	7.99334594327958	8.30041704362138	-0.300650185293869	0.197143597360905	0.585081301466141
Merged-chr1-88695279-4	chr1	88694771	88695771	+	810.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6920.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.4625208600577	4.28028485526326	4.45381025498237	4.22913893960768	4.22891790697071	4.26006128548618	-0.426629546926958	0.342452935828146	0.731311405759821
Merged-chr14-47187945-8	chr14	47187419	47188419	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	1494.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	7.32206550157567	7.27271911603102	7.35877605969981	7.33141055737636	7.34898768344279	7.27029993323209	0.00512847301253533	0.981914314793805	0.995857371200016
Merged-chr11-34031536-4	chr11	34031029	34032029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15399.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.82649649200895	7.95447905064077	7.43962317972242	7.77928543899325	7.92666646663772	7.73448491772954	0.0742831039694526	0.763549792892167	0.941793063578371
Merged-chr8-123037081-2	chr8	123036581	123037581	+	758.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	5203.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.49485215298751	3.52709999477576	3.67508363925216	3.66593918091707	4.00025073427213	4.07969515208974	1.20441780124561	0.0300949892489056	0.209464145999409
Merged-chr2-11705793-4	chr2	11705308	11706308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271501)	promoter-TSS (NM_001271501)	96.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	7.48100496572333	7.48506483896957	7.15668197638154	7.33138958842205	7.27131646434764	7.05528011149984	-0.238446733119288	0.337948250772604	0.727893923438778
Merged-chr8-70699636-1	chr8	70699136	70700136	+	1000.0	f0_balb.idr	exon (NM_010592, exon 1 of 1)	exon (NM_010592, exon 1 of 1)	1897.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	8.75766434924985	8.66694877966336	8.62600593469953	8.56428257256867	8.60115489173029	8.58048848588722	-0.143667336668265	0.463532944048116	0.815978023363705
Merged-chr9-49483569-3	chr9	49483026	49484026	+	803.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	2699.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	4.77085587878196	4.12829256204598	4.41997048489436	3.38438437355248	3.20455898629301	3.47935266378406	-4.3262447119151	7.28614177914207e-09	6.84272330879067e-07
Merged-chr4-117132061-3	chr4	117131606	117132606	+	667.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313916, intron 5 of 14)	intron (NM_001313916, intron 5 of 14)	1857.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	3.35967144194694	3.18627311386615	3.33524751102736	3.18404400279887	3.43266489309719	3.71320457544068	0.616523986653602	0.330217517591375	0.721789606895393
Merged-chr13-98807863-4	chr13	98807370	98808370	+	958.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	7579.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.74788788519416	5.98644072586089	5.8490159822268	6.21229144712242	6.57323125521279	6.05784679146406	0.760772522792397	0.0156216163826954	0.136552521900549
Merged-chr10-62226003-2	chr10	62225503	62226503	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	MTB_Mm|LTR|ERVL-MaLR	5215.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	4.34404010560823	4.2936653758775	4.23658596292788	4.27794540035006	4.08091663355795	4.25901511290208	-0.251598905004181	0.584045194363101	0.874412662298521
Merged-chr2-52939287-2	chr2	52938787	52939787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	81419.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.67913579761116	7.11105848604693	6.23505418441364	6.99711365494232	6.99520677660372	5.71315305862121	-0.051580158554316	0.947432807377363	0.988008807662239
Merged-chr4-150240225-4	chr4	150239683	150240683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 2 of 11)	intron (NM_023119, intron 2 of 11)	2859.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	5.59086392488167	5.46166885420052	5.52136018817378	5.35154819409606	5.41084225518091	5.4083890657206	-0.260394573407832	0.427511266361239	0.794365779350231
Merged-chr11-49064201-2	chr11	49063701	49064701	+	760.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145164)	promoter-TSS (NM_001145164)	11.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	6.60819004591594	6.57147949704977	6.17772505567706	6.59714660347335	7.06212860694903	6.19293851540267	0.329887230545056	0.331636105492142	0.72297130356206
Merged-chr18-80420265-3	chr18	80419771	80420771	+	922.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	49396.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	3.24007126132363	3.52785034835759	3.50303431506403	3.54145212876603	3.53164708037376	3.72739837720365	0.617183015008653	0.295271370341253	0.692154917593724
Merged-chr8-116580835-2	chr8	116580335	116581335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	75820.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	5.35595713401166	5.10058112200171	5.30053036557248	5.77068221742121	5.75904699025117	5.33241587329672	0.755777051895432	0.0324121505085634	0.218819490427306
Merged-chr19-11240704-3	chr19	11240200	11241200	+	853.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	Lx|LINE|L1	25451.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	3.05729356622854	2.80857160003862	2.95163031784744	2.86432664240571	2.83585811012239	2.84101405359238	-0.471712052685606	0.502373215510155	0.836485922295083
Merged-chr2-174463643-2	chr2	174463143	174464143	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025983, intron 1 of 2)	intron (NM_025983, intron 1 of 2)	458.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	6.76425225297214	6.99514324205297	6.70042029012055	6.96745265108112	6.92694269955528	6.62337218490472	0.0368948607819739	0.890229618924335	0.974472301756451
Merged-chr12-73964980-3	chr12	73964531	73965531	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	501.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	6.95514076470326	7.3607580419614	7.05634013063464	7.29688202420008	7.32891644277304	7.39732410392202	0.296435694787162	0.238054117208459	0.634607598906913
Merged-chr10-30803200-4	chr10	30802636	30803636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358841, exon 1 of 16)	5' UTR (NM_001358841, exon 1 of 16)	190.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	8.35757020262385	8.29849278646539	8.23778448336173	7.85545040579903	7.91934162419105	7.90567151760884	-0.574749510565094	0.00527436682414563	0.063493853400392
Merged-chr7-127993296-2	chr7	127992796	127993796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023258, intron 1 of 2)	intron (NM_023258, intron 1 of 2)	571.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	5.73571589528427	6.02410183139936	5.93066321467148	5.74469553731367	5.5989951926708	5.66511120710383	-0.421854523960953	0.177929555039597	0.55892688546374
Merged-chr7-35082037-2	chr7	35081537	35082537	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-25471.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.83686183181575	5.99929912900377	6.06824286272694	5.44646671676269	5.81688983689665	6.18859678956016	-0.21863468267074	0.527745394636337	0.850108008834301
Merged-chr10-24635633-4	chr10	24635134	24636134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	40192.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	8.10818965224405	8.26780955436661	7.75809562108584	7.86462327552162	8.12994909662278	7.53032575538772	-0.275064944770255	0.310173575704346	0.705739523510061
Merged-chr4-41737744-4	chr4	41737244	41738244	+	918.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	3615.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	3.21564349019484	3.41041829390675	3.45421342222318	3.3259095849507	3.39819794905053	3.47109237046161	0.142378042710459	0.812572702319734	0.955654408687215
Merged-chr1-43506445-2	chr1	43505945	43506945	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	60694.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.37592335477541	5.26741492721611	5.38765225351272	5.78710113399854	5.8417964064534	5.56989422056589	0.774539959998113	0.0178763367527042	0.150035730131028
Merged-chr7-80387944-4	chr7	80387452	80388452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-6.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	7.14896483680532	7.40170133142014	7.75160995097901	7.60223282726021	7.70821279184346	7.57955743510001	0.26697638685312	0.303128655143166	0.69985349451501
Merged-chr9-64704707-4	chr9	64704214	64705214	+	991.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33042.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	6.6164973417542	6.71739110033508	6.23469049703854	6.42318882357339	6.26638189473029	5.91082897184481	-0.525058199769405	0.0932156385531168	0.406599226920095
Merged-chr10-7955445-4	chr10	7954950	7955950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138667, intron 1 of 6)	CpG	673.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	7.90959499282675	7.64530112653467	7.95403964096312	8.05850725436643	7.72709773006647	7.85542944184165	0.0663257366802161	0.779239348575507	0.945710994231145
Merged-chr11-96944886-2	chr11	96944386	96945386	+	881.714294	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134021)	promoter-TSS (NM_134021)	740.0	NR_003293	319371.0	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	4.90193382021427	4.74003150526308	4.58281135436566	4.6448000314616	4.87472404406393	4.51791399511298	-0.127557691413833	0.763231685493349	0.941751050441619
Merged-chr16-55863573-4	chr16	55863067	55864067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 3 of 5)	intron (NM_001134457, intron 3 of 5)	-24926.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.88655534535115	3.89203886204306	3.69556812404503	3.6476283556524	3.8153379803732	3.65692133476934	-0.385829190604405	0.474195452124592	0.821299449548079
Merged-chr10-58446821-4	chr10	58446315	58447315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-37.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	9.46064566961425	9.84504070501428	9.22634908533143	9.18320781158921	9.6449685392288	9.27742678357161	-0.206573802451146	0.418020713299462	0.788473936634102
Merged-chr11-95849466-2	chr11	95848966	95849966	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	6221.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.42757424246837	6.15916281203292	6.49156584667249	6.3447474817479	6.53878017800453	6.63356848325577	0.240367620788202	0.395194850837216	0.772579826044138
Merged-chr19-46509247-3	chr19	46508698	46509698	+	835.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	7550.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.59289884498461	5.8554651388006	6.28438330292878	5.91283346908187	5.84687085892926	6.19417002911502	0.0958714670985343	0.781597729355152	0.946255348749196
Merged-chr1-24461226-4	chr1	24460730	24461730	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 12 of 50)	intron (NM_007733, intron 12 of 50)	126207.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.52600638829529	3.68930776622267	3.4916294144674	3.43511196309371	3.77347262909412	3.96557789325588	0.552749792562744	0.346492510594139	0.734677492075457
Merged-chr13-8644993-4	chr13	8644497	8645497	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	MIRb|SINE|MIR	226047.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	6.95410461471118	6.8153893469216	6.82314563949448	6.48293342486697	6.39135325716517	6.1762375949448	-0.799075365356033	0.00277797491029152	0.0396891717609095
Merged-chr8-126497757-4	chr8	126497252	126498252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22687.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	6.44978987925822	6.04803082034559	6.35154820148166	6.23331782053249	6.03092838087403	5.98931688610404	-0.338702075634148	0.261003656482098	0.658521360261207
Merged-chr13-62956870-3	chr13	62956412	62957412	+	659.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7981.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.37433336392854	3.53690812060734	3.34823785681318	3.1922612545163	3.24270177043727	3.18555588468088	-0.874631261361498	0.158051723570264	0.529626991052898
Merged-chr7-4236396-2	chr7	4235896	4236896	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.46669915042431	4.37841414954871	4.62701592045026	4.56237549258386	4.34387970456618	4.76629423158804	0.171912832728295	0.697644052087982	0.920019752221009
Merged-chr11-79086609-2	chr11	79086109	79087109	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-26773.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	2.90615090239425	3.09401757657592	2.89598857648774	3.11442456797414	3.13744171745103	3.15187401820266	0.726348263173972	0.280187991353299	0.677926210657904
Merged-chr9-86478541-4	chr9	86478014	86479014	+	962.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	11360.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	6.41743994247505	6.2388265732564	6.21591913811618	6.29343433309644	6.51867630993511	6.50491456919532	0.239735929648081	0.387338711324693	0.767583116195701
Merged-chr1-53774206-4	chr1	53773725	53774725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	10990.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	6.6207630552758	6.96941700599131	6.83269415530178	6.9871706031562	7.07498869457884	7.10791872553707	0.368394815453587	0.149197444321969	0.51537803021029
Merged-chr7-97906091-3	chr7	97905600	97906600	+	859.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357362, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-13858.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	3.19436659748136	3.08199353188193	3.20240448547785	3.49879188764831	3.53718458859609	3.60703424419352	1.5635663385426	0.0110871229194834	0.108152089552682
Merged-chr2-12228500-4	chr2	12228005	12229005	+	760.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-72741.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	2.8707956530157	2.88565533581083	2.91341376384842	2.88395461457393	2.80071662450905	3.15694586689311	0.284752825776047	0.685140263306168	0.916175954737346
Merged-chr16-36940861-3	chr16	36940343	36941343	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5860.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	6.77519583639665	6.65115882738002	7.24623044485985	7.45920269109444	7.58337541727772	6.98913213059795	0.703473102459433	0.0191897406701197	0.15722771318274
Merged-chr11-53350762-4	chr11	53350255	53351255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-12.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	9.20289102523761	8.98208795908948	8.69827953065477	8.94039485187606	8.55932928579028	8.53065251224499	-0.396504551664436	0.105596620349948	0.433729074246149
Merged-chr7-117490881-4	chr7	117490376	117491376	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	109897.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	4.08220001178186	4.72393904552547	4.37650116460886	4.14552755694259	3.69793219418557	3.80417126558739	-1.49412991299527	0.00664112198489548	0.0751814036243104
Merged-chr3-105801356-4	chr3	105800853	105801853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	28.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	7.58248805032964	7.64778879617612	7.4923512073362	7.73155821625665	7.59199737231759	7.48733390933333	0.0454875412799116	0.840634107159713	0.962819298477451
Merged-chr4-129065910-5	chr4	129065390	129066390	+	864.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	PB1D10|SINE|Alu	7619.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	5.38686829359044	5.57487025423535	5.73136201514574	5.9089341674012	6.02328084013771	5.98468658906364	0.745432368898474	0.0174751960656463	0.147584618464008
Merged-chr5-134676285-4	chr5	134675851	134676851	+	958.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1897.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	4.63154680592986	4.3993521315992	4.58313103765905	4.27675637495022	4.08559641858799	4.40418762232772	-0.75350660711612	0.0970720007765087	0.415470759766048
Merged-chr13-97544789-2	chr13	97544289	97545289	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15211.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.84778719015904	4.56030153085084	4.64958516465699	4.51918813304924	3.85189687092686	4.5569718038626	-0.870004296047033	0.0873465541817891	0.391865642980445
Merged-chr13-23704350-2	chr13	23703849	23704849	+	723.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-5891.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	3.6986553752447	3.66886332418288	4.16290155665527	3.99937908275709	4.21419666679639	4.68670610390125	1.34832721784547	0.015932144060206	0.138588442505197
Merged-chr3-145649645-8	chr3	145649192	145650192	+	962.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010516, intron 1 of 4)	CpG	293.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	4.08206920428928	4.28332553011986	4.23969052013627	3.84857296747044	3.88960435211589	4.03310041690198	-0.832581357619755	0.0902482956082165	0.3994977442938
Merged-chr10-12841718-3	chr10	12841171	12842171	+	974.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	B4A|SINE|B4	20064.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.09230520271678	2.93075385246856	3.0178076195097	2.73236219612831	2.86937733832633	2.78451667250897	-1.06405884887206	0.137738853221612	0.496124604946274
Merged-chr5-137114650-2	chr5	137114150	137115150	+	776.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_201373, exon 3 of 3)	exon (NM_201373, exon 3 of 3)	1557.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	2.3849911404637	2.51536611279816	2.72400615944268	2.38482151291125	2.40734865511313	2.49304865744848	-0.707791053061171	0.385454125252805	1
Merged-chr12-99564800-6	chr12	99564285	99565285	+	814.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 1 of 3)	intron (NR_136760, intron 1 of 3)	944.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	5.11420760465382	5.2604937935216	5.4707308595055	5.55548194219213	5.72663046960075	5.35285762913765	0.552916997611518	0.116419769222189	0.455577804265088
Merged-chr1-39576786-4	chr1	39576311	39577311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033135, intron 1 of 6)	CpG	536.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	8.36529536696458	8.04913669182297	8.28977262619673	8.29460753217397	8.01012845185239	8.25364809661739	-0.0725406710402513	0.749910153302005	0.937463855381525
Merged-chr15-55191367-4	chr15	55190888	55191888	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 4 of 8)	MTC|LTR|ERVL-MaLR	57952.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	4.18366079660135	4.19638619611619	4.61740062509221	4.16713456815078	4.3816600264158	4.78706590706918	0.316895307449002	0.522361841551475	0.847587801886238
Merged-chr12-117479911-4	chr12	117479452	117480452	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36527.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	6.11866818203074	6.103578886605	6.08597863000596	6.4108412128874	6.29782383256238	6.2941230403836	0.388249978870952	0.158363085029864	0.530115282582971
Merged-chr1-152606405-4	chr1	152605893	152606893	+	948.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	L3|LINE|CR1	18824.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.92421693708	5.65602928523964	5.44829507321145	5.60047892760151	5.62728604455566	5.68561318957553	-0.121695326295875	0.714382210619026	0.925873245006649
Merged-chr2-156278857-3	chr2	156278354	156279354	+	970.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 9 of 17)	intron (NM_172674, intron 9 of 17)	-33619.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	3.92346163822896	3.95746814873099	4.0996640305079	3.86812480717754	3.7623739558952	3.93394481572094	-0.433269024440203	0.392412685380891	0.771172125304963
Merged-chr12-52120467-4	chr12	52119967	52120967	+	967.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	22721.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	3.60768850961077	3.83895602931022	3.67721433550566	3.45015431945202	3.63300327469087	3.41377478387906	-0.71120575739458	0.218963676898709	0.613128894826908
Merged-chr2-45229676-2	chr2	45229176	45230176	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-112234.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	3.6734109394745	3.91007990031785	3.78829309770443	4.13599600746787	3.77720309612287	3.63863398846037	0.238791946197442	0.666847482467626	0.908432307157273
Merged-chr1-172550707-4	chr1	172550210	172551210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040558)	promoter-TSS (NR_040558)	96.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	4.95957010220932	4.84225397318723	5.01234002789205	5.41542225093537	5.51376194381663	5.24963176368581	0.970915436736078	0.00679181896467431	0.0764417249306939
Merged-chr6-119897766-1	chr6	119897266	119898266	+	558.0	f0_balb.idr	Intergenic	Intergenic	-4932.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	2.95573559251445	3.23184053934561	3.31160422338321	2.9600122107343	2.91807954323638	3.05172855779134	-0.909452804953023	0.183570981514832	0.566825684946619
Merged-chr17-71448757-4	chr17	71448266	71449266	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028887, exon 6 of 48)	exon (NM_028887, exon 6 of 48)	26577.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	5.41945090774465	5.85712209097652	5.78644313201622	6.00200721061577	6.43749644473474	5.79635689307336	0.736726731442921	0.0363675638270786	0.234654970569023
Merged-chr1-157019875-4	chr1	157019502	157020502	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80376.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.74688088407193	6.49168538822578	6.43983041561668	5.93409095414095	5.86046594137049	6.12188420771375	-1.01006280511914	0.000465540095600264	0.00994412978533557
Merged-chr4-55526694-2	chr4	55526118	55527118	+	682.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010637)	TTS (NM_010637)	5857.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.60264604881379	2.46877524020919	2.65320529177686	2.48345335113212	2.55943430448485	2.47410970341652	-0.387821333925074	0.62166824619278	1
Merged-chr2-120104661-1	chr2	120104161	120105161	+	562.0	f1_c57bl6.idr	intron (NM_133838, intron 3 of 5)	intron (NM_133838, intron 3 of 5)	49914.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	2.83758229731227	3.22697755437067	3.25636764347629	3.12472820505667	2.87910498150099	3.04307146922421	-0.451103249767348	0.522464958391119	0.847630327909223
Merged-chr12-69985760-4	chr12	69985264	69986264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 1 of 4)	intron (NM_022028, intron 1 of 4)	1238.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	5.99946686146556	5.91864454985788	5.74740553405802	6.19262501277708	6.21786023954655	5.72630653511924	0.308924491993091	0.334855711887071	0.725198429760335
Merged-chr11-4184703-2	chr11	4184203	4185203	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2130.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	2.5647928721418	2.49188630571222	2.82640577928537	2.53079976312209	2.57567640999828	3.0099575614972	0.462143341267414	0.566344987631949	0.867321286905744
Merged-chr15-64234592-4	chr15	64234097	64235097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	78076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.18514469032592	6.42540279824426	6.34762905411635	6.45730867498988	6.691782759609	6.24501558548764	0.272979705757882	0.346585292214418	0.734724440003498
Merged-chr2-70968508-4	chr2	70968009	70969009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	49865.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.47223815324125	7.59272599408956	7.23955769359348	7.45486736265829	7.73429620829271	7.26003233498535	0.086192471765947	0.740256973713581	0.934501571762959
Merged-chr19-18617631-4	chr19	18617104	18618104	+	903.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	MIRb|SINE|MIR	14209.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.21478376624364	5.34769014261429	5.36766992119895	5.48896564415478	5.26413746088958	5.62568707883907	0.289240432954535	0.405545114193914	0.780279107725129
Merged-chr2-103073607-4	chr2	103073123	103074123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019735)	promoter-TSS (NM_019735)	-52.0	NM_001355474	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	7.32416597495173	7.29823588746827	7.33924409942418	7.08701916703338	7.07526112272792	7.07564923986605	-0.360425218796101	0.115613319138956	0.453985514814265
Merged-chr4-129830446-4	chr4	129829945	129830945	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9737.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.31526431116536	7.33598810600511	7.2295734846521	7.84364677486913	7.84377777914822	7.25002263265774	0.56741676243185	0.0318638148578922	0.216461937673224
Merged-chr19-6874392-2	chr19	6873892	6874892	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16181.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	2.57329559472245	2.72205132421207	2.57672923314511	2.68452140343261	2.46854717140666	3.00034451142502	0.569097812651221	0.481008499231062	0.824891904452147
Merged-chr10-69186972-1	chr10	69186472	69187472	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-21580.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.80992974806391	3.81696967385858	4.16167163289011	3.91934370397402	3.79605675771003	4.18573179352877	0.11328349275729	0.830698837548087	0.960370002015736
Merged-chr7-90052393-1	chr7	90051893	90052893	+	908.6666869999999	f0_c57.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23234.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	2.87545323766454	2.76467499155849	2.89266990465952	2.96990121824674	2.96752338408005	3.35618257394873	1.22154193520186	0.0850913561944344	0.386252608791229
Merged-chr13-45600708-3	chr13	45600206	45601206	+	959.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	ORR1F|LTR|ERVL-MaLR	93262.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.63207357772037	3.27976367526325	3.40517793683444	3.50248947308418	3.2425925662607	3.68734437618151	0.124761769651999	0.841565762608172	0.962988397967269
Merged-chr17-32412148-2	chr17	32411648	32412648	+	733.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021319)	TTS (NM_021319)	-8566.0	NR_153797	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	3.79305265547876	3.87855873824918	3.86959595167644	4.0583197715045	4.21175225442333	4.22436681350916	0.954211457319361	0.0529928955828958	0.294925614050003
Merged-chr10-117217017-4	chr10	117216512	117217512	+	836.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	7495.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	6.67496920561485	7.12970015711996	6.80553791270209	6.56551397188753	7.25059719484414	6.73864956782514	0.0140910976463306	0.964164862658638	0.991353521860134
Merged-chr10-80033734-3	chr10	80033245	80034245	+	927.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5914.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	6.46842833939015	6.54775849664079	6.35707029858168	6.26486569947726	6.25942869187935	6.05336813778387	-0.430496984661504	0.120641832475772	0.464567086109036
Merged-chr3-96734861-2	chr3	96734361	96735361	+	978.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	7250.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.0177328070479	4.26534657256516	4.68190474257374	4.32793939175079	4.31531799322411	4.35833223450039	-0.0168135466871518	0.97263043350239	0.993868590220018
Merged-chr5-139398562-4	chr5	139398056	139399056	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7831.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	7.21466778382394	7.1440760228231	6.77064976103047	6.71080496479133	6.87724780496741	6.86020126878119	-0.381467842108753	0.14904982402351	0.515252918876122
Merged-chr4-115850160-4	chr4	115849659	115850659	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	10961.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	4.72480566667057	4.79557292077435	4.77972980331421	4.63585894775895	4.2238404615579	4.73288560881368	-0.551475909208634	0.208153930846012	0.599041414336639
Merged-chr16-55839349-4	chr16	55838846	55839846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-705.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.70965729948356	8.05171026744071	7.42855823896314	7.77964888062828	8.01295665002964	7.48559196238101	0.0307431739306642	0.912198936830599	0.980305193163948
Merged-chr16-4908950-2	chr16	4908450	4909450	+	985.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	Lx5c|LINE|L1	22850.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	5.88027187982089	5.93183685584649	6.42971221705364	6.17361534789167	6.35596709996206	6.2089368276629	0.273059342538695	0.38586187629367	0.766674506964127
Merged-chr13-55329916-4	chr13	55329403	55330403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-173.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	4.51562814458427	4.42465664683313	4.92153090740777	4.52335651125963	4.52154169141936	4.12293446428625	-0.536838017603158	0.261742173074395	0.659531304499251
Merged-chr7-49467993-4	chr7	49467538	49468538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	168797.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	4.43710923883951	4.54120944982197	4.44603382893091	4.08347147029108	4.52894451545121	3.80482954978176	-0.747852047261689	0.168873104835489	0.545531802905646
Merged-chr6-136717738-3	chr6	136717274	136718274	+	932.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-55881.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.06606429790097	3.0279467324399	3.11585888664533	3.9807588860339	4.25216028614845	3.69499611009164	4.06927946863276	1.5958070205424e-07	1.07954398833571e-05
Merged-chr5-36515328-4	chr5	36514818	36515818	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	15305.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.74263367306089	5.41656521445234	5.73853317498667	5.38436957631699	5.2975601075117	5.32450793011056	-0.577879586507469	0.0892819633659217	0.396934184373724
Merged-chr1-33916662-6	chr1	33916091	33917091	+	785.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	ORR1D1|LTR|ERVL-MaLR	8366.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	5.45422809517525	5.16447852059314	5.12073459253581	5.42368573379233	5.2639834419879	5.31854637693213	0.145845988499136	0.682411168717824	0.915072334923495
Merged-chr12-76371019-4	chr12	76370521	76371521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	CpG-3289	755.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	7.94511876474795	8.0236399360198	7.90764949589704	7.75927595724321	7.91118055337903	8.14823378770848	-0.0229639186531187	0.919427854724237	0.982034101943453
Merged-chr17-33503682-3	chr17	33503188	33504188	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20397.0	NR_137628	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	3.20619364391742	2.9618426469607	3.13739559851182	2.93358093231511	2.73394757777741	2.91338587852522	-1.19166529866766	0.0922785633563045	0.404702775708351
Merged-chr1-55054905-1	chr1	55054405	55055405	+	543.0	f1_c57bl6.idr	intron (NM_026424, intron 1 of 3)	B3A|SINE|B2	2135.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	3.42578987552122	3.34126878563212	3.35883690681424	3.84019015704293	3.94809854912227	3.91826825956578	1.87237473208091	0.0010606626520404	0.0188499824756466
Merged-chr19-7040095-4	chr19	7039591	7040591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016737)	promoter-TSS (NM_016737)	-65.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	7.40557544497114	7.34506706248636	7.0019162853464	7.17044602867778	7.10414030858974	7.13989254785468	-0.201947145411439	0.416850231465059	0.787693011303642
Merged-chr4-108834362-7	chr4	108833875	108834875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	-73.0	NM_001356361	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	6.95223759211101	7.22641859037693	7.32664710345015	6.99816421820082	7.3318171222633	6.96655712599684	-0.0821632412663262	0.757613396263845	0.939883186830738
Merged-chr2-163698268-3	chr2	163697721	163698721	+	949.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	4184.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	3.93076249391046	3.8550284778955	4.12618054931826	4.13804587903141	3.53111369736622	3.80891097880187	-0.373352090172094	0.50751414766213	0.839180422055374
Merged-chr4-108118604-4	chr4	108118116	108119116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011327)	promoter-TSS (NM_011327)	-69.0	NM_011327	20280.0	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	5.64284790226814	6.10959700222965	6.38206577779589	6.21571010336561	6.36465294541616	6.31304779022886	0.386371803370147	0.240114656777164	0.637109682764418
Merged-chr13-113378476-4	chr13	113378002	113379002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124342.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.88980199995614	5.90571271236895	5.57521065321964	5.72028825664954	5.76556547835823	5.51814323798571	-0.232788629233572	0.472541820343916	0.820550293768681
Merged-chr11-121697716-3	chr11	121697210	121698210	+	914.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	2.88785117357962	2.67206609855664	3.35798954294615	2.6985052182137	2.48707510882093	2.77065192086619	-1.77725382190079	0.0313705767537842	0.21461318107652
Merged-chr4-147426145-2	chr4	147425645	147426645	+	571.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-127132.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.41528760228383	3.51596085092836	3.46042191627725	3.51608690386087	3.48117205693532	3.78748745200002	0.464813939530773	0.421141504387802	0.790131900416752
Merged-chr7-102010262-2	chr7	102009762	102010762	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 18 of 24)	intron (NM_133947, intron 18 of 24)	7893.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.90354873287785	3.99304748052271	4.51130367374344	3.92611209619859	3.69771299250633	4.04823145242883	-0.773041704961175	0.157890432221945	0.529448983812508
Merged-chr17-25318555-3	chr17	25318058	25319058	+	832.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053260)	promoter-TSS (NM_053260)	-96.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	4.32976439141065	4.02096833199666	3.83926269233472	3.67244620057661	3.25766252680061	3.38620748183518	-2.19902756586709	0.000415317830448003	0.00906076718298832
Merged-chr4-19901288-4	chr4	19900789	19901789	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	21277.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	3.90155367392243	4.23433436921672	3.7372005359892	3.63552835929118	3.53968041818892	3.46052802298529	-1.44059027083925	0.0126093638790921	0.11832839943083
Merged-chr14-61757281-4	chr14	61756787	61757787	+	929.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74914.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.69482891155406	3.40605599480932	3.6687247907672	3.90365941976615	3.77584068086184	3.93936592626013	0.926065496812957	0.0933220039848739	0.406913866141245
Merged-chr10-41910890-3	chr10	41910388	41911388	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	23449.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.531495722215	4.7010350446229	4.06982026577101	4.56725066814468	4.70756627697898	4.61931069191788	0.38857891265602	0.412325780638405	0.784428320958084
Merged-chr7-35167162-4	chr7	35166667	35167667	+	964.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-19218.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	4.35532430439204	3.94648207337779	4.41615648520863	4.21624391912971	3.85909386134643	4.4017563115223	-0.223063278577108	0.669744294137147	0.909740802307883
Merged-chr8-64951093-4	chr8	64950580	64951580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	B3A|SINE|B2	3895.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	4.15187022426483	4.19333885725889	4.35735496593432	3.79877478932171	4.3849843159212	4.16071191215144	-0.238390144138132	0.644152827609608	0.900067122451665
Merged-chr6-88828748-2	chr6	88828248	88829248	+	718.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011844)	TTS (NM_011844)	13187.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	6.49248631283457	6.41789935232098	6.18327970342535	6.42268622663821	6.57700052059646	6.2440756831403	0.0851010148580378	0.765406110197473	0.942148336413151
Merged-chr5-90682071-4	chr5	90681555	90682555	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41528.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	3.63450122956035	3.62734819310132	3.35383323953587	3.46972946782253	3.22656304199609	3.48371455845463	-0.592597850068399	0.328333335476871	0.720562985671201
Merged-chr10-8883305-2	chr10	8882805	8883805	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2765.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.38691563605998	7.5129549752432	7.09653727366244	7.3198876449661	7.56873829243183	7.18052283089946	0.0341076919675474	0.895647956169211	0.975665889379756
Merged-chr4-122897184-3	chr4	122896691	122897691	+	689.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11115.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	3.80512271868125	3.84326457859223	3.77248737837903	4.19638171310619	4.15282987057483	4.40320898958359	1.29977374779964	0.00943355625579734	0.0965675258624616
Merged-chr15-53139482-1	chr15	53138982	53139982	+	1000.0	f0_c57.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	206701.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.4073713501264	7.28540850745137	7.30443104501203	6.90641804791865	7.15405224215622	6.53696811004394	-0.643726336902294	0.0196138316758376	0.159362142962903
Merged-chr9-106234197-3	chr9	106233705	106234705	+	970.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 10 of 10)	intron (NM_020559, intron 10 of 10)	11607.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	4.35132797371354	3.99022199825324	3.79456419512497	3.83004577772005	4.02046301363472	3.8666244096433	-0.479165813063918	0.373802483496833	0.757546812967132
Merged-chr7-19878144-2	chr7	19877644	19878644	+	567.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177036, exon 7 of 7)	exon (NM_177036, exon 7 of 7)	9821.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	2.65804163644402	2.5537617562501	2.58923036891005	2.5865670712193	2.53537687518392	2.72428555625166	0.0669884469362916	0.929868777392197	1
Merged-chr4-123919029-2	chr4	123918529	123919529	+	764.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017475, intron 1 of 6)	ID_B1|SINE|B4	1596.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	5.93277756585204	5.86587791943233	6.25886984532236	6.13309511504701	5.83301611571716	5.81270801117328	-0.14568993053565	0.646850921707175	0.90114476203283
Merged-chr11-29692827-4	chr11	29692335	29693335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-63.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	7.32366242285698	7.37873483762962	7.28523773067597	6.8944123286799	7.05506276826352	7.25196986238774	-0.39265574476186	0.106236263445979	0.43518946171409
Merged-chr4-14826580-4	chr4	14826088	14827088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-1.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	6.0869228257871	6.54719724020738	6.33457117855195	6.60465786639948	6.66428291262648	6.76856581891689	0.544236586476306	0.0564805156056455	0.306404403606373
Merged-chr15-43477146-4	chr15	43476641	43477641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	-88.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	7.16078072210226	7.61042341134915	7.12988234410947	7.19865471941906	7.41507902700356	7.02634885113074	-0.142644657462618	0.603746841202787	0.88281464129341
Merged-chr14-73138075-2	chr14	73137575	73138575	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4435.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.68947826159937	4.64500179016793	4.93491313492908	4.54159806963031	4.68715935786108	4.58859123483439	-0.334187161242012	0.419197603626297	0.788850311023746
Merged-chr12-16873853-1	chr12	16873353	16874353	+	754.0	f1_balb.idr	Intergenic	Intergenic	-21125.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.64073747979367	4.72305681890951	4.91648259322789	3.7526093303879	3.90454537604417	4.63709180817854	-1.47228576522497	0.107652097817365	0.438341852468181
Merged-chr2-68825578-4	chr2	68825077	68826077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35864.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.9541172940124	4.78701485776087	5.13297847951687	5.12600136124822	5.06714391049237	5.02888218176738	0.259101821781409	0.491501138819344	0.830572128647886
Merged-chr7-92670081-4	chr7	92669574	92670574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029078)	promoter-TSS (NM_029078)	-162.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	7.58467949513987	7.75575706883192	7.39273287983037	7.37366275370355	7.47203324004525	7.48162234961333	-0.220040267073762	0.350290647124311	0.738319835221541
Merged-chr1-85088550-1	chr1	85088050	85089050	+	573.0	f1_balb.idr	3' UTR (NM_213615, exon 7 of 7)	3' UTR (NM_213615, exon 7 of 7)	21303.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.16606586270787	3.44533343928302	3.36434020780492	2.82052218673168	2.63563696183186	3.68093744556894	-0.50786286901137	0.778165176708884	0.945414788336538
Merged-chr2-118507292-4	chr2	118506763	118507763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-27567.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	3.79842219995904	3.34952751884516	3.39530744507097	3.71201470724721	3.55015581631315	3.79368286968333	0.510565216339005	0.396632993516942	0.773701467493871
Merged-chr10-91124069-4	chr10	91123559	91124559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133668)	promoter-TSS (NM_133668)	-96.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	8.38803081668112	8.65236400018786	8.27883052188546	8.27023372974956	8.40797607280976	8.38290979904802	-0.137928737019468	0.531145534862048	0.851437333400144
Merged-chr1-64736637-8	chr1	64736090	64737090	+	864.6823119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022721, exon 2 of 2)	exon (NM_022721, exon 2 of 2)	1160.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	3.88038777826023	3.33485030235168	3.64228469389225	3.82807444568507	3.45477564768179	3.60526083856799	-0.0109809676934163	0.985649643951825	0.99691465847822
Merged-chr19-41242187-4	chr19	41241709	41242709	+	863.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 5 of 14)	intron (NM_133352, intron 5 of 14)	21795.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.67962126946681	3.35456054034317	3.71853408061413	3.47335122365572	3.28765183615044	3.63833184999175	-0.447865112334042	0.458777987480917	0.813236440920954
Merged-chr1-59755486-4	chr1	59754987	59755987	+	940.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8792.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	4.13746560501087	4.22371999474798	4.0254428411869	4.34872307613047	4.46541462462612	4.1469323746637	0.540156307233752	0.253732182532014	0.651117231535132
Merged-chr16-76407416-2	chr16	76406916	76407916	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33589.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.5524316630528	5.51017206324111	5.45040460967117	6.08902857061363	6.1147167231121	5.63604450629001	0.848862313933388	0.00979955949022543	0.0990526902408501
Merged-chr17-81703455-4	chr17	81702937	81703937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34950.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	7.06060304717079	7.26507891376577	7.16764408645327	6.93570184875543	7.28275264135394	7.22521135881934	-0.0135570670893897	0.956907157107337	0.989887454023164
Merged-chr1-172341102-4	chr1	172340606	172341606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039484)	promoter-TSS (NM_001039484)	-104.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	6.12657861180357	6.12237622027317	6.59853371807015	6.03141367290306	5.89088081369211	5.96046769160805	-0.561876171581972	0.0711517630168243	0.349843165934167
Merged-chr7-80766217-4	chr7	80765697	80766697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 4 of 37)	intron (NM_016721, intron 4 of 37)	37134.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.58520675011383	5.3713543842941	5.06557063054131	5.17687487090799	5.15370869332172	4.81258000177207	-0.607575177451165	0.119639608841881	0.462312384364241
Merged-chr19-12009678-4	chr19	12009165	12010165	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27075.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	4.51952544661412	4.48464031481107	4.749928073884	4.62794049401455	4.5298253687523	4.36314218916036	-0.158000405943703	0.714181182547194	0.925756575982089
Merged-chr13-4759815-2	chr13	4759312	4760312	+	616.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-150648.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.06583232315448	3.33686165681484	3.6214210401196	3.20318815198591	3.0849998304727	3.33468914829391	-0.593952631593992	0.371037270089852	0.755248334635754
Merged-chr2-45120292-2	chr2	45119792	45120792	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-2850.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.4261261735653	4.56025276361319	4.47589311939433	4.8319353194119	4.87361914032135	4.93498000088869	0.914279211018134	0.0238837229539021	0.181669531839097
Merged-chr11-6546707-5	chr11	6546154	6547154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190343)	promoter-TSS (NM_001190343)	-233.0	NM_146014	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	7.68419895311854	7.4792399837161	7.51385197155069	7.48524536951977	7.16617948606647	7.53159167945735	-0.244153008996655	0.31735287223213	0.711242432534033
Merged-chr1-59670799-4	chr1	59670302	59671302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009460)	promoter-TSS (NM_009460)	32.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	8.66562591620465	8.77888509316666	8.62299487167099	8.77679592134921	8.5982322273506	8.69768090801133	-0.00140693306242223	0.994416667044114	0.998918571480046
Merged-chr13-21780440-5	chr13	21779898	21780898	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020034, exon 1 of 1)	exon (NM_020034, exon 1 of 1)	227.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	6.2993840187883	6.50501141373162	6.57806147670627	7.1974327982407	7.43894850008375	7.20557211885943	1.28203686486977	6.37498187683051e-07	3.63819953365784e-05
Merged-chr11-107470775-4	chr11	107470251	107471251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-31.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	7.96095530452224	8.08557440940542	8.02698481325991	7.95571153053544	8.22560514197076	7.89153284236735	0.0197715744322568	0.92971704264995	0.984210069653274
Merged-chr13-81133704-4	chr13	81133121	81134121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	169547.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.07271986067429	7.839334667144	7.45269984258962	7.81147969185316	7.95167790606743	7.57313592537324	-0.0395579010728046	0.881676079335651	0.972854789328347
Merged-chr2-155369717-4	chr2	155369217	155370217	+	914.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-12139.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	5.45968072123325	5.57818827144276	5.52501595149196	5.57916425930958	5.73739024196956	5.55912553194127	0.211122019842824	0.511836935305876	0.841594846107395
Merged-chr5-138254875-2	chr5	138254375	138255375	+	765.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081108)	promoter-TSS (NM_001081108)	-607.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	5.22667372205158	5.26145663509377	4.9868683422234	5.22815813516494	5.36458584663145	5.44693617963539	0.346689775168925	0.33074406002932	0.722177477777833
Merged-chr17-50880202-4	chr17	50879705	50880705	+	911.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 13 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	181524.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	4.34718499253286	4.61289341395186	4.54141226617296	4.9620483107027	4.91391768947419	4.92122791490428	0.996010539862177	0.0144516694269922	0.129383958433524
Merged-chr10-7598913-2	chr10	7598413	7599413	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	9113.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	2.27048733775615	2.13768681567911	2.37219353841747	2.16017429575182	2.24436471054603	2.12010586628635	-0.575330408311352	0.517823761840995	1
Merged-chr8-117338391-4	chr8	117337875	117338875	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	-10795.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.36538973764528	5.92167548416444	6.3220895874688	6.55230426761048	6.42899722704652	6.13180623314886	0.290842286985648	0.346831109396383	0.735006911502857
Merged-chr7-79275691-2	chr7	79275191	79276191	+	700.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018811, intron 1 of 10)	intron (NM_018811, intron 1 of 10)	2425.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	3.21749691247442	3.05234140868287	3.12382363127062	3.17136706689362	3.29016611412218	3.19599543327279	0.383092194039553	0.547455532003461	0.859289970326416
Merged-chr14-54765625-3	chr14	54765164	54766164	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16222.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.43114298012096	3.93682375497993	4.22219988643943	3.37398179983943	3.15804515010684	3.60530251419968	-3.0923342680535	2.82869971039549e-06	0.000134728360333479
Merged-chr15-50854602-4	chr15	50854095	50855095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	34454.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.32742447474788	5.22672060498934	4.93206098966413	5.15690517992627	5.14637438763289	5.14421961687567	-0.0730121980401272	0.842412404867066	0.963021575063938
Merged-chr6-87542143-4	chr6	87541658	87542658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8899.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.7862235710558	7.46084983375824	7.46187299165813	7.72557799507328	7.88617582965687	7.58996385132593	0.234671654745341	0.332992129505796	0.723927708416112
Merged-chr4-137864960-4	chr4	137864461	137865461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	2724.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	6.86929861190639	6.8287901298767	6.50774025640373	6.01356295576346	5.88146628444936	5.73093178858196	-1.4329166540828	1.01862450738514e-06	5.51090429197029e-05
Merged-chr14-66264905-4	chr14	66264523	66265523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	16029.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.65015785774905	6.44515316750862	6.59778437910977	6.54537419522245	6.71255412176865	6.96519994906861	0.285384517053335	0.296517111224817	0.693171366955017
Merged-chr4-105317023-4	chr4	105316514	105317514	+	940.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159667.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.07492222829477	5.5222127729716	5.46499806774803	5.58376862118613	5.48895570912158	5.28093384251671	0.186204718888391	0.606963931927726	0.884418509188691
Merged-chr2-79254985-7	chr2	79254517	79255517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010576)	promoter-TSS (NM_010576)	-409.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.20542760632536	7.00475142261824	6.95335001719088	6.93475216827311	6.9589553803692	7.09121875063643	-0.108009213603609	0.661208508413411	0.906299831450979
Merged-chr15-7085290-4	chr15	7084780	7085780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44292.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	2.99735534256691	2.73070729321377	3.03316657479703	2.88553697699902	2.82899724287671	3.04777244690499	-0.0219279235374429	0.975361492418574	0.994454548709104
Merged-chr6-82754849-2	chr6	82754349	82755349	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	RSINE1|SINE|B4	19605.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.24624120300473	4.74417985043932	4.66320913437123	4.67521815717679	4.39192209030565	4.76622440573037	0.106817786335498	0.81577022174027	0.956487086386988
Merged-chr14-74689785-3	chr14	74689285	74690285	+	873.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-42512.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	2.33535545129853	2.49320240338608	2.36278116758194	2.47801854572333	2.30018998615121	2.5658839385608	0.294560885999298	0.721707362729541	1
Merged-chr7-130858163-4	chr7	130857665	130858665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7559.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	6.54908287616472	6.5088634809599	6.20055175002367	6.47176950495626	6.50182402045795	6.34492840548433	0.010946342971263	0.968634699347732	0.992811398801848
Merged-chr11-77688610-2	chr11	77688110	77689110	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	2471.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	3.93156866064559	3.85812482267724	4.09255025589901	3.82731289005551	3.89369122070077	4.24562237605888	0.102014188540725	0.843806854210794	0.963645026675097
Merged-chr12-34451479-3	chr12	34450976	34451976	+	724.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	77413.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.22331030681407	3.34727148344946	3.30611592126457	3.10732287231402	3.37232896327182	3.20502014311621	-0.219643304197482	0.728244170748862	0.930466448117087
Merged-chr16-24282678-4	chr16	24282176	24283176	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110674.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.90812760312741	3.55242594252882	3.36918005272227	3.90107590578921	3.86230383205557	3.79188020683564	0.700069591108939	0.237422870497458	0.633858960065212
Merged-chr16-5203944-4	chr16	5203442	5204442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013796)	promoter-TSS (NM_013796)	70.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	7.05362836354181	7.8407081829545	7.68639919318796	7.34391221424457	7.4753145571803	7.49294413054306	-0.19439614477075	0.500291393446245	0.834978949366358
Merged-chr9-113932235-4	chr9	113931730	113932730	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1296.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	6.21037138771036	6.26179583003393	6.21528005875777	6.36318376897017	6.34496215754952	6.21273058464774	0.138282962355971	0.612894233072199	0.886969289870611
Merged-chr5-145204441-4	chr5	145203922	145204922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167944)	promoter-TSS (NM_001167944)	-137.0	NM_001359187	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	7.07717581314839	7.28909519755449	6.87525823181063	7.46442043023877	7.35494507479558	7.18248549688873	0.36123144467477	0.157866320277725	0.529433117755483
Merged-chr5-77265600-3	chr5	77265102	77266102	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011263, exon 1 of 4)	5' UTR (NM_011263, exon 1 of 4)	108.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	6.66290808922049	6.47934587726687	6.91689660183663	6.63322054221957	6.32524235648379	6.44625796915113	-0.348228269830031	0.221760003722179	0.616594479372955
Merged-chr9-106200102-4	chr9	106199612	106200612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	-879.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	5.86125451612733	5.69575190102464	5.9645953253262	5.95949256930552	6.03165186029715	6.19503355784852	0.390189720234942	0.196140676970173	0.583934534992153
Merged-chr13-9094822-1	chr13	9094322	9095322	+	969.0	f0_balb.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	941.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	8.19621969878683	8.29298280200281	7.89466207051458	8.14045526116583	8.23337719713325	7.74110871311631	-0.11441626469345	0.648898185594679	0.901995781836595
Merged-chr11-82100417-4	chr11	82099922	82100922	+	964.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1423.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	6.22751110681799	5.91008292011186	5.80853396765455	6.61500976053012	6.43281539838015	5.95138038577432	0.61899534141136	0.0629472196863227	0.326418562611214
Merged-chr10-41474315-2	chr10	41473815	41474815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1999.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	5.18543612248418	5.00540676729294	4.88128036830967	5.00985977254208	5.28237694904498	5.46777001321386	0.462011846202537	0.226643019243457	0.62156609505752
Merged-chr1-136116370-4	chr1	136115860	136116860	+	847.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	2.99193761710426	2.82210244585852	2.91282490190786	3.02919188550368	3.09501978293992	3.10546917961837	0.775914792630836	0.25159543731952	0.649084172669086
Merged-chr7-123291867-2	chr7	123291367	123292367	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 17 of 19)	intron (NM_001316713, intron 17 of 19)	77001.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	4.41974625122655	4.14979023292996	4.78206550122867	4.87128327657662	4.68017290097141	4.65904194978734	0.669808941630233	0.142909842919269	0.50455063667587
Merged-chr15-102296215-4	chr15	102295707	102296707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014976)	promoter-TSS (NM_001014976)	-86.0	NM_001014976	105988.0	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	3.77398696863054	3.86541784136146	4.08197703129106	3.97035755524896	4.13406297459713	4.32156200417394	0.707855219152675	0.162470817145907	0.53589809574695
Merged-chr7-47022706-4	chr7	47022206	47023206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14292.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	5.89250874742736	5.80756242224702	5.5160903521586	5.50858652285129	5.33694574094419	4.94169944956263	-0.871313613339442	0.0185596659624578	0.153877310223614
Merged-chr9-44582648-4	chr9	44582153	44583153	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22239.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	4.96158126460424	4.65102820610708	4.83936846628851	5.19831096113016	5.15443661836925	5.1867823814148	0.76592491437122	0.0430698133505246	0.260283925357336
Merged-chr11-47032550-4	chr11	47032078	47033078	+	969.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 6 of 7)	L2|LINE|L2	221779.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	3.21460689373245	3.34365232220529	3.2051723199248	3.00896840763728	2.99045947394256	3.03993452059991	-1.10161787523828	0.0927489260097034	0.405701265916025
Merged-chr12-32146677-4	chr12	32146180	32147180	+	803.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61658.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.48838232802333	3.23178474805537	3.87710339545997	3.6123691372548	3.44623542511749	3.40131289905634	-0.228938020210415	0.718873809949965	0.927581986451582
Merged-chr7-105751641-4	chr7	105751154	105752154	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009906, exon 3 of 13)	exon (NM_009906, exon 3 of 13)	581.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	8.08359271304864	8.6326441397618	7.76117628619933	8.10628746931166	8.23922409324059	7.72410190642004	-0.243312103547635	0.418144263712367	0.788473936634102
Merged-chr9-45269154-4	chr9	45268655	45269655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008348)	promoter-TSS (NM_008348)	-6.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	7.56268059709012	7.65774555781693	7.54923117872339	7.6922091722587	7.72428584320835	7.4845070197579	0.0745193212746939	0.740700047216014	0.934642102586365
Merged-chr13-99218640-3	chr13	99218136	99219136	+	976.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	33813.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.70317474037605	3.51738607715219	3.43578908073567	3.41299816556585	3.29781183096365	3.61529309759923	-0.444911795995729	0.454906990776832	0.810663309750856
Merged-chr10-59263994-2	chr10	59263494	59264494	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	42072.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.29628697224753	5.59826956367865	5.60095174062563	5.81923497550481	5.92178338447234	5.76965872637309	0.627583040293942	0.0524388638652494	0.29282906585402
Merged-chr12-100024750-2	chr12	100024250	100025250	+	745.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	60251.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.49465066967738	3.20685341288915	3.39576630611687	3.13230370546416	3.00847703835602	3.18572193869951	-1.12409601921742	0.0825448312117945	0.380035982707409
Merged-chr1-165658795-4	chr1	165658298	165659298	+	859.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 3 of 5)	intron (NM_001038846, intron 3 of 5)	-24257.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.68892335152448	2.64707640087028	3.03912270452692	2.63604593457643	2.59796623694291	2.76773875390674	-0.696176102792153	0.3623763602549	0.747851834735049
Merged-chr13-5801959-2	chr13	5801459	5802459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	56133.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.06539752041123	6.31485765152833	6.08210460044704	5.77536674362845	5.63572505378108	5.93947477195706	-0.674686292455273	0.0272938915603519	0.196816893054317
Merged-chr11-115071126-3	chr11	115070631	115071631	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9092.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	6.43794124650986	6.09710984264134	6.25931615966131	6.09258578560361	5.53997290346553	6.15859545208901	-0.554560978341037	0.0983828732442842	0.418248985017801
Merged-chr16-76370249-4	chr16	76369752	76370752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2797.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.84108340268968	5.60177598684938	5.53972487300027	5.96888708697301	5.76991236272319	5.94350656773847	0.391232384447993	0.218356474455746	0.612472797118277
Merged-chr17-32892076-2	chr17	32891576	32892576	+	709.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-473.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	4.56377138829527	4.89850050786122	5.15695637658649	5.04071819007159	4.9145873328494	4.80573950911788	0.0912536504598222	0.826439977717933	0.959132530412348
Merged-chr18-34118648-1	chr18	34118148	34119148	+	591.0	f1_c57bl6.idr	Intergenic	MER5B|DNA|hAT-Charlie	-102336.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	6.40596991527213	6.08881181222025	6.2549731501026	6.96433593148774	7.30460950727787	6.67554870196736	1.20487098197022	5.33482205476791e-05	0.00167005219538423
Merged-chr13-23763654-4	chr13	23763152	23764152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030609)	promoter-TSS (NM_030609)	-16.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	6.72018537548855	6.83753331719902	6.69951290019609	6.72501584154969	7.34402964573865	7.14972073903969	0.533113204591042	0.0585449718448832	0.312951947659581
Merged-chr2-128751123-4	chr2	128750650	128751650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	(A)n|Simple_repeat|Simple_repeat	52235.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.61852996173035	6.60730595491205	6.63975212043814	6.71978975032695	7.15721090845446	6.80991303491147	0.466501486831729	0.0840717509773721	0.383711384747144
Merged-chr2-19658585-6	chr2	19658121	19659121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033642)	promoter-TSS (NR_033642)	559.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	7.79844068386181	7.47634748124212	7.49676614819921	7.56214534205025	7.21147914392738	7.53383129837916	-0.237109360430867	0.345942437850741	0.734409449386005
Merged-chr13-100183320-4	chr13	100182813	100183813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 5 of 15)	intron (NM_001126182, intron 5 of 15)	18809.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	5.93945616761145	5.97568421633087	5.70940661505886	6.3816870407855	6.35581078758286	6.03219926174375	0.657041412226767	0.0304182017880582	0.210761739893476
Merged-chr9-78073943-4	chr9	78073435	78074435	+	813.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	21977.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	3.91196024114588	3.92043872699904	4.30093173555455	4.21575658288323	4.46211132060851	4.09505475946874	0.643725610547511	0.20003068671986	0.588819237293881
Merged-chr3-142590607-4	chr3	142590057	142591057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-4290.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	6.53391507987016	6.39161553983827	6.41300812270291	6.88449437363614	6.86777699804084	6.76465151086327	0.622743336796508	0.0148966716958943	0.132004500369752
Merged-chr2-160569710-4	chr2	160569178	160570178	+	959.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76219.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.38525600445376	3.35736420139722	3.58979891393559	3.31912601439485	3.61073960784164	3.65908120573483	0.349830586749315	0.556507306363145	0.863603167403937
Merged-chr5-124498413-4	chr5	124497933	124498933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	15278.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	5.8452582170082	5.58188976242576	5.42181254384874	5.67987565537728	5.68068675001243	5.42225397369248	-0.0552433851850769	0.870885164448491	0.970222087171093
Merged-chr11-101442785-2	chr11	101442285	101443285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011289, exon 2 of 5)	exon (NM_011289, exon 2 of 5)	540.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	8.05253990857665	8.10208836798423	7.70166994223382	7.83171831731213	8.01954810524766	7.39456062590099	-0.263538618789763	0.32760388777001	0.719793584677403
Merged-chr15-75921601-4	chr15	75921085	75922085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	-25.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	7.16185741861475	7.42808437363762	7.47129399294452	7.39679063855341	7.52442104247555	7.64145168936523	0.242140506806113	0.313894727465581	0.708312869876137
Merged-chr1-156473199-4	chr1	156472644	156473644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	1184.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.93552584955556	7.98451372225517	7.3805410850269	8.04262995301516	8.08882669023011	7.39038993813143	0.120031916750147	0.689445200133049	0.917378645419624
Merged-chr2-163601915-3	chr2	163601406	163602406	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-408.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	6.6243490491023	6.27104836352278	6.07065021911572	6.30331942537493	6.18135095257682	5.96175970867613	-0.316183959514735	0.313332231370984	0.70794067756605
Merged-chr12-85279669-3	chr12	85279187	85280187	+	742.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025421, intron 2 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	748.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	6.82369967779475	6.93274214300402	6.32236433852431	6.64870391094739	6.87976515363917	6.10610244422791	-0.205120752290322	0.54557733672998	0.858209810368924
Merged-chr16-55970548-2	chr16	55970048	55971048	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 5 of 5)	intron (NM_024218, intron 5 of 5)	-3256.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	2.92993699014164	3.35394082420838	3.6997834537195	3.35921010987864	3.25270296781316	3.62563927064315	0.20568685188962	0.772446286221923	0.943716660313239
Merged-chr1-46921749-4	chr1	46921234	46922234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	4042.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	4.70553584679871	4.62105535848086	4.46964099101987	4.28700925435403	4.10409975561656	4.6177755172288	-0.678951695685572	0.140822645505102	0.501417779339381
Merged-chr2-163640674-2	chr2	163640174	163641174	+	795.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	intron (NM_012032, intron 1 of 9)	-4176.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	3.45881435476999	3.60453866129149	4.13267609064874	3.66282778758158	3.86883561649376	3.68910529891829	-0.0334173284957035	0.955431456294083	0.989763164889919
Merged-chr10-57487435-2	chr10	57486935	57487935	+	693.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008297, intron 1 of 11)	intron (NM_008297, intron 1 of 11)	1050.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	4.50372814660324	4.58496381343477	4.11790484579896	4.22192929626882	4.43769272194314	4.28726263754664	-0.270943809459106	0.566839537825738	0.867634455258659
Merged-chr10-10466675-3	chr10	10466191	10467191	+	792.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	LTR101_Mam|LTR|ERVL	5623.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.14559606218637	4.4128710218831	4.71625675908027	5.87108256004683	5.98252380198648	6.03305908797113	3.31141637254424	6.15847674064582e-16	2.03347036760182e-13
Merged-chr2-122117170-2	chr2	122116663	122117663	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 1 of 39)	intron (NM_145531, intron 1 of 39)	1223.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	3.95004929902518	3.76400621831017	3.65937923590738	3.74104656326853	3.65681080659576	3.98233972061965	-0.0319779943960034	0.953191337420989	0.989361385177328
Merged-chr2-60288808-4	chr2	60288305	60289305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4321.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	5.58982895475894	5.37194703091779	6.02245129130167	5.48993438138151	5.69851634246248	5.81857374846761	-0.00717459012307942	0.984067354592664	0.996464361754829
Merged-chr5-99336056-1	chr5	99335556	99336556	+	675.0	f0_c57.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83129.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.83218602759211	7.9369690332659	7.70734794231557	7.64707954719873	8.04566921883299	7.54247834199695	-0.0830897698493924	0.74044245943981	0.934528157499283
Merged-chr10-7264973-3	chr10	7264476	7265476	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52739.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.80884833976424	4.05982618949958	3.56190692522212	3.18683625318027	2.91211539320974	3.14613194117372	-3.36308488589288	7.75016814889302e-06	0.000320674287087564
Merged-chr1-35971610-4	chr1	35971117	35972117	+	952.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-96783.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.09655470787049	5.19724867808679	5.01628640297096	5.32579359044941	5.38002287478275	5.00729819601479	0.304299534805399	0.40795500426706	0.781926100186554
Merged-chr1-185332123-4	chr1	185331637	185332637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-22.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	6.58309133788676	6.86519260979149	6.50755074936774	6.84897462816472	7.09532606783262	6.78796929462823	0.397781072366083	0.145014793430499	0.507985592300096
Merged-chr11-11462050-4	chr11	11461533	11462533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001185153, intron 1 of 7)	CpG	386.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	7.12084373350504	6.92772687459216	6.88099789903506	7.21325416921495	6.88603808684107	6.86496596103641	0.023346867269793	0.928714784368872	0.983862545551093
Merged-chr2-180171440-4	chr2	180170940	180171940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-148.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	7.86956918321282	7.41253540375385	7.22824330819557	7.54391707033492	6.8933080306706	7.02279732706263	-0.517573722878998	0.0946491438743219	0.410136490273995
Merged-chr1-62725153-3	chr1	62724602	62725602	+	931.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21785.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.8263749815903	3.66338491597372	3.47069766418328	3.35899910151489	3.18943562898568	3.75287096356058	-0.780789115260319	0.217952681894014	0.612062327203412
Merged-chr2-30784589-6	chr2	30784070	30785070	+	959.522217	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17167.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.74593427050045	5.72949829771138	5.55834163568046	5.49132887901858	5.35249590119788	5.62091073950399	-0.384296950085659	0.239001045417076	0.635645304195616
Merged-chr4-21767177-4	chr4	21766672	21767672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029840)	promoter-TSS (NM_029840)	39.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	4.76733283145832	4.50989098960185	4.67523667902656	4.92371741997663	4.62757136448963	4.85584000230396	0.344286506553529	0.404616196473991	0.779747209915063
Merged-chr6-76267498-2	chr6	76266998	76267998	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-974979.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	5.4675310793017	5.81052782339108	5.33057536312437	5.19416660888524	5.16451158049838	4.92563546251732	-0.896671270721462	0.0159621050828597	0.138723590896882
Merged-chr7-143038308-4	chr7	143037790	143038790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14460.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	7.56200350769096	7.13066392753154	7.50833902413731	7.44269913150856	7.62196227931104	7.49579377501041	0.1663140804572	0.505736864259977	0.838177729332582
Merged-chr2-145832087-4	chr2	145831588	145832588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	45972.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	7.89424180182239	7.88583445653205	7.57654040232231	7.5632149069072	7.90070275998826	7.52191800235494	-0.169882369306084	0.493202721376222	0.831208279358962
Merged-chr1-131438726-4	chr1	131438227	131439227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88634.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.68505737205374	6.53439701070412	6.34450537975209	6.43404152952592	6.80798179327337	6.60627507236404	0.152550755940735	0.58887497045515	0.876650937479947
Merged-chr8-4252296-3	chr8	4251748	4252748	+	601.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	-854.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	4.32046517192364	4.34899633869006	4.54111857959783	4.72317704576592	4.84970142291159	4.68861297036699	0.885136400017419	0.0345945322948714	0.228038186628083
Merged-chr1-64118367-4	chr1	64117877	64118877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	3012.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.9747672069964	5.97077085071442	6.23698637264703	5.60935938415684	5.71239020486685	5.79676911490747	-0.626268428347393	0.0418254576358905	0.2558791764552
Merged-chr8-83736820-4	chr8	83736310	83737310	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	4501.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	6.37402629971653	6.25021558651893	6.33232294214639	6.83355420403829	6.96567322215128	6.80538169208059	0.885055807570784	0.000616271029747467	0.0123741988038676
Merged-chr16-18687580-4	chr16	18687069	18688069	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57631.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	4.40429530971548	4.35484073188152	4.21138797514615	3.59727917393196	3.70330592740747	3.83873187767045	-1.90871625818565	0.000250939002494009	0.00602949249769608
Merged-chr5-110177310-2	chr5	110176844	110177844	+	791.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040430)	promoter-TSS (NR_040430)	487.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	7.26286103734243	7.09929011898682	7.1815883352885	7.54512254529476	7.82619146996111	7.0820290519183	0.516184773551465	0.0644508571572445	0.330956981136756
Merged-chr13-17976053-4	chr13	17975546	17976546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17305.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	6.77557360249575	7.0969159030001	6.63916847607412	7.01075890925059	7.23834512547952	7.09922757789653	0.39693797993086	0.138743980409238	0.497691577630065
Merged-chr15-30622364-3	chr15	30621867	30622867	+	794.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 5 of 21)	intron (NM_001355502, intron 5 of 21)	-416759.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.14750991626747	3.72350550313438	3.22995219597968	3.29000690347782	3.13650861201059	3.82587802575247	0.201601565832164	0.777407124912461	0.945093216103975
Merged-chr8-115635500-1	chr8	115635000	115636000	+	677.5	f0_balb.idr	Intergenic	Intergenic	71394.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.28539909825883	4.08169360655472	4.33939481220594	3.97749505929335	3.79675581153424	4.05126627795819	-0.871276773879446	0.0788606110977239	0.370976578935968
Merged-chr9-113805178-3	chr9	113804687	113805687	+	818.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7399.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.58196827083698	4.41804998480117	4.37788849207473	4.5764154064775	4.27502353385709	4.53163797449663	-0.014938808618889	0.973116198000595	0.993943197210219
Merged-chr1-149843594-1	chr1	149843094	149844094	+	558.0	f0_c57.idr	intron (NM_008869, intron 15 of 17)	MTD|LTR|ERVL-MaLR	78845.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.01951393550394	3.7625664807327	4.12569159642716	4.30683484631907	4.30510160126407	4.41175381939726	1.04661814051349	0.0315071959266519	0.215048048450895
Merged-chr5-135489252-4	chr5	135488756	135489756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	CpG	55866.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	5.93835911048227	6.14408712421403	5.92368067800462	5.86698357320394	5.76802455600997	5.83757250636041	-0.33348492367105	0.266415453760054	0.664166899200562
Merged-chr1-191026270-4	chr1	191025774	191026774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198025)	promoter-TSS (NM_198025)	-84.0	NM_198025	226844.0	Mm.134053	NM_198025	ENSMUSG00000066595	Flvcr1	9630055N22Rik|FLVCR|Mfsd7b	feline leukemia virus subgroup C cellular receptor 1	protein-coding	6.68866283656577	6.63984469802672	6.92994157005309	6.84897318008834	6.66075196311485	6.92023316356371	0.0889061770105039	0.735392919531648	0.932740485166675
Merged-chr11-55209414-2	chr11	55208914	55209914	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5074.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	5.56459633415075	5.84022617218199	5.37289124121965	5.59031636046068	5.74128263169193	5.7013405913476	0.111649521667134	0.740140997489467	0.934499978758628
Merged-chr7-36720895-1	chr7	36720395	36721395	+	744.0	f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22777.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	4.35066494622178	4.71669656409483	4.46027148780639	4.70245816633113	4.76132433941073	4.52844993554731	0.361064303573252	0.405611836018103	0.780315699039533
Merged-chr2-119547097-4	chr2	119546623	119547623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	504.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	6.34135364283946	6.51879135712685	6.52955002641835	6.41697464362072	6.82673554194455	6.51857089874844	0.233850745597415	0.406835821797174	0.781097742451355
Merged-chr15-64186038-4	chr15	64185563	64186563	+	965.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-125615.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.31558646096284	6.41561735334545	6.09743566457014	6.61742114928891	6.81847737443142	6.47171822438843	0.58134410404218	0.0403882699694762	0.250363344082558
Merged-chr10-10476373-2	chr10	10475873	10476873	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4059.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.07347695685922	4.72872865712301	4.95636296409313	5.05462972490951	5.29855867085225	4.90966422627334	0.391590899164583	0.320754336385537	0.714535415023768
Merged-chr6-134983703-4	chr6	134983201	134984201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	1700.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	3.32987051449473	3.03442059310624	3.07431104088199	2.99355039899236	3.05083696210098	3.20498370883972	-0.321202378245346	0.630213935787684	0.894642529318186
Merged-chr6-145305782-3	chr6	145305282	145306282	+	845.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	55230.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	6.81020928357098	6.93424516831499	6.90273657502927	7.1128806029558	7.32002041820283	6.93220482403642	0.394029501961219	0.120870814733075	0.464932449718459
Merged-chr2-156178368-2	chr2	156177868	156178868	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133242, intron 2 of 16)	intron (NM_133242, intron 2 of 16)	1212.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	4.50723829099389	4.50539572783562	4.44192601553517	4.66981212598052	4.30959823482919	4.50939955049083	0.0300489732972173	0.945235369477879	0.987875414328125
Merged-chr1-131105948-1	chr1	131105448	131106448	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-8105.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.07682465983198	2.96611702604818	3.41143822090164	3.26504224341016	3.22198787404459	3.20988534844747	0.319648135023052	0.628141773960848	0.893508518159715
Merged-chr6-15728466-4	chr6	15727977	15728977	+	847.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7816.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.15838341138321	7.11208647790955	6.74237104081935	7.09745049786352	7.2275734372198	6.80135207260549	0.056477592046184	0.83663848613732	0.962001762335242
Merged-chr17-23801777-1	chr17	23801277	23802277	+	770.0	f1_balb.idr	Intergenic	B3A|SINE|B2	-1410.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	2.52023778176653	2.14132050437731	2.33340460525526	2.52367598836891	2.48183505653446	2.84692230077536	1.71936522987431	0.0655858311500628	1
Merged-chr2-32447366-4	chr2	32446845	32447845	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-3112.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	7.20202084448995	7.39053039163194	6.89638741401823	6.68822811557296	7.12458321468709	6.61057153059375	-0.524144300416046	0.0742020418381185	0.358300194701312
Merged-chr14-105287937-3	chr14	105287532	105288532	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 2 of 7)	(TATATG)n|Simple_repeat|Simple_repeat	29359.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	5.22499407969317	5.15675873575228	5.27809146635652	5.2113177792853	5.19857231020164	5.24702180172116	0.000374821232074132	0.999138355483058	0.999864283693757
Merged-chr12-99560222-2	chr12	99559722	99560722	+	591.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3619.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.80748899792388	3.81754383681902	3.74277707154349	4.01223076020393	4.3215855670065	4.21028902438795	1.19480277575392	0.01847028025697	0.153319541063643
Merged-chr11-94392558-1	chr11	94392058	94393058	+	983.6666869999999	f0_c57.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	418.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.96102469824501	6.98931806932702	7.14273720707258	6.87084294628974	7.00987198136054	7.15234739889857	-0.0252837327833192	0.918652865462997	0.981830247255695
Merged-chr14-14870667-4	chr14	14870146	14871146	+	987.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195229, intron 21 of 34)	intron (NM_001195229, intron 21 of 34)	49831.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	3.48963804551993	3.51690043096714	3.62007033939771	3.16084034996917	3.22800281519177	3.37356892900075	-1.13503408248514	0.0620648921329205	0.323557142071051
Merged-chr12-105796195-3	chr12	105795700	105796700	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	11503.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	4.53271305973435	4.89240004064097	5.09005337278836	5.05637401589993	4.64780074652223	5.08964654056978	0.193342652310749	0.654887388987964	0.903994257749971
Merged-chr17-5527467-3	chr17	5526988	5527988	+	756.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RLTR10D2|LTR|ERVK	34888.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.1430132307443	3.0887936129219	3.29571754027064	2.9920432713727	3.07342664500242	3.08559184179895	-0.542317344289647	0.406272994346472	0.780624793265574
Merged-chr4-134289029-4	chr4	134288529	134289529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1183.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	4.8536379240475	4.98363260201431	4.92772879099739	5.33551157678235	5.59767989704279	5.64305637579315	1.23293443106195	0.000600635407719758	0.0121659374404931
Merged-chr6-56899672-2	chr6	56899172	56900172	+	642.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	2214.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	4.21330946310388	4.20152941874155	4.54225315008734	4.42691175267737	4.44370615415138	4.52897272659891	0.384050928183142	0.392771461702395	0.771320548318037
Merged-chr9-118643810-2	chr9	118643310	118644310	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	(CA)n|Simple_repeat|Simple_repeat	37101.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.55425020491665	4.18758905079279	4.73340893039323	4.74519383862376	4.42012810991685	4.79832824593237	0.3763495642908	0.415417014747272	0.786431391784201
Merged-chr5-150593841-7	chr5	150593323	150594323	+	973.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	CpG	702.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	8.04259376401511	8.13199765430457	8.02703340130297	8.32668628964733	8.19342483822528	8.25843245222887	0.267914109202633	0.194193232645714	0.581378321415765
Merged-chr16-55756917-1	chr16	55756417	55757417	+	1000.0	f0_c57.idr	Intergenic	Intergenic	65221.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.11230058680073	7.55655972182446	6.83196726324653	7.24369239114081	7.50919127490322	7.05451218104353	0.11413280369957	0.703210077894097	0.922108924938678
Merged-chr15-98870471-2	chr15	98869971	98870971	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	734.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	4.73809548014276	5.06402692324281	5.31029315186165	4.94545591739943	5.11502447229042	5.50848516963353	0.317486459908235	0.443447142496384	0.803800173379074
Merged-chr4-132382515-4	chr4	132382007	132383007	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-28821.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	5.98702086384866	5.89792267419553	5.99129103723321	5.82303915386743	6.05503044108931	6.0066887217798	0.0183408216384912	0.950664728125541	0.988462504713506
Merged-chr18-46742443-4	chr18	46741964	46742964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026217)	promoter-TSS (NM_026217)	588.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	6.67874598806234	6.33138928724439	6.36056006966478	6.77816817300929	6.5222038918159	6.42064033056807	0.183267837273389	0.523510059012292	0.848259993842575
Merged-chr15-5349095-4	chr15	5348600	5349600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104913.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	5.26285700801978	5.47365541363501	5.57285473888143	5.9749404178566	5.88163223566679	5.84438944121388	0.861835544234696	0.00704705680956589	0.0785494310797533
Merged-chr15-100226073-3	chr15	100225578	100226578	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1781.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	4.68626430199027	4.6117612529383	5.29975118711547	4.87936312503596	4.85456938864873	4.7780905462767	-0.111784810305576	0.798308263301625	0.951930937621884
Merged-chr6-108574078-2	chr6	108573586	108574586	+	770.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	49081.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.36678419750086	3.20638410047966	2.90818255782837	2.95553835863516	2.79868975904062	3.1669997160467	-0.907052209925493	0.211543505115151	0.603945120913907
Merged-chr6-92941491-3	chr6	92940991	92941991	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	909.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	5.1329781260428	5.6177354197621	4.75206132638604	3.63275891739185	3.493300096749	3.75059902098487	-5.42108143989828	3.35536398281951e-12	5.87775002699886e-10
Merged-chr8-83654885-1	chr8	83654385	83655385	+	1000.0	f1_c57bl6.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	2207.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	4.06580645314486	3.75993120376125	3.91572826679365	4.41044371409646	4.46267756997653	4.28185499811141	1.33162957492701	0.0065336128017968	0.0743400593479978
Merged-chr19-41307315-2	chr19	41306815	41307815	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	MER58A|DNA|hAT-Charlie	-43311.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.45066208666893	2.45327610231624	2.55461054608325	2.55295299112155	2.52870759676118	2.86751473439703	0.97143764505163	0.22019987237503	1
Merged-chr8-95131459-1	chr8	95130959	95131959	+	610.0	f0_balb.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	11081.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	4.23610426021254	4.41914529205072	4.68275386101427	3.82672417091154	3.6838825651612	4.15546224355509	-1.61717408127175	0.00206629716315588	0.0317313010627773
Merged-chr12-17681039-2	chr12	17680539	17681539	+	943.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9770.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.48439202863501	5.43810066243251	5.81732211929886	6.02871473776362	5.97325139124036	5.99487814571149	0.762020294556678	0.0157462389742078	0.137410912696999
Merged-chr7-118243239-2	chr7	118242739	118243739	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	398.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	8.0897088017933	8.16351091390054	7.90388933876311	7.92175698326893	8.03213866023307	8.10779097667837	-0.0577545313505488	0.791046509622411	0.949694766870106
Merged-chr1-40085962-4	chr1	40085461	40086461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037980)	promoter-TSS (NR_037980)	-110.0	NR_037980	100047133.0	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	4.95991314029842	5.21230071273464	4.55749563694845	4.98775115835794	4.99556396398647	5.06781587990285	0.134271985955707	0.746780969013804	0.93630958811295
Merged-chr9-59732859-6	chr9	59732432	59733432	+	945.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17717.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	8.13585695629334	8.06081093724634	7.9819947830129	8.01005408731971	8.10901888939757	7.67350535129812	-0.15655770319978	0.501139797417357	0.835440646332086
Merged-chr13-113485028-2	chr13	113484528	113485528	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17816.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.38474485214975	5.88603418935284	6.24078373439092	6.26617415260441	6.19114483062102	5.89316453084995	-0.0868032323556752	0.785188939677064	0.947850129107983
Merged-chr14-79508093-3	chr14	79507621	79508621	+	771.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	ID4_|SINE|ID	-7553.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.80738145203404	5.27425699808611	5.39914349784141	5.6264037358531	5.83508169926874	5.43173128987966	0.244586718949107	0.502535066806497	0.836562439638842
Merged-chr12-84515710-3	chr12	84515235	84516235	+	889.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173756, intron 5 of 5)	intron (NM_173756, intron 5 of 5)	-54093.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	3.51592565592117	3.30004952913376	3.41808254109711	3.49636265161979	3.3055965139482	3.37705285253821	-0.0795576525751588	0.894199651039537	0.975424158569389
Merged-chr4-86421601-3	chr4	86421114	86422114	+	858.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029967, intron 25 of 27)	Lx8|LINE|L1	136689.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	3.1227581847363	2.97933684253251	3.01917915284548	3.17480503648715	2.97909530266975	3.47783700506945	0.757940879467247	0.266518868923003	0.664166899200562
Merged-chr19-5424347-1	chr19	5423847	5424847	+	765.333313	f1_c57bl6.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	632.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	6.31789895655349	5.79799804999726	6.09413308633309	6.43911809993763	6.01660303536905	5.8696380899277	0.0844886941914346	0.803844267171752	0.953557286986578
Merged-chr18-65678583-3	chr18	65678105	65679105	+	848.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-19663.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.92081429573984	6.75701018778577	6.4521537551542	6.94286838443839	6.88869029953245	6.18828937013237	-0.00459399008007944	0.988738711073739	0.997426973334006
Merged-chr17-45625525-4	chr17	45625033	45626033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23431.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	5.90492788073769	5.96552078952496	6.08931016508918	6.33580260597823	6.51816331743466	6.54898735661475	0.81664711710396	0.00362228935990465	0.0483871332571756
Merged-chr4-148088073-4	chr4	148087556	148088556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	8.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	6.63508702862268	6.90722377325654	7.30992615639301	7.03390687839651	6.86876613063178	7.2269534325992	0.111629025397914	0.703376259529271	0.922108924938678
Merged-chr7-30954095-2	chr7	30953595	30954595	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	2708.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	5.44202840817256	5.2532668712776	5.34401931435046	5.25145941256279	5.28695192965119	5.46572264579104	-0.0346373799639427	0.919711571116531	0.982080783809915
Merged-chr1-127239528-2	chr1	127239028	127240028	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	34542.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.39922630418845	4.7068791971444	4.65945028046437	4.38207753673376	4.34012018232863	4.60900003194274	-0.383361703499982	0.382906359393645	0.764341334464389
Merged-chr2-167633459-2	chr2	167632959	167633959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1454.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	5.46418729893769	5.31150571617239	5.42657721695258	5.3491182590694	5.71939008271257	5.70874893326012	0.388718968338189	0.254187315724161	0.651179145391095
Merged-chr2-128700924-3	chr2	128700426	128701426	+	822.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	2011.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.96064193131684	7.33072693717635	6.81414306081248	6.99535359683275	7.17492093346059	6.74356416549433	-0.106540604728847	0.70781309574521	0.923566531330147
Merged-chr8-83607524-2	chr8	83607024	83608024	+	858.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-651.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	5.9390968739106	5.79419955016212	5.8601962191479	6.08188008461308	6.17558207973694	6.3833468731297	0.598055229931232	0.043063214307967	0.260283925357336
Merged-chr5-3596198-4	chr5	3595696	3596696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172991, exon 1 of 5)	exon (NM_172991, exon 1 of 5)	130.0	NM_001293806	71382.0	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding	6.72847443594099	6.91377349914562	6.6248926871351	6.59389582525913	6.59110808944071	6.37266952910189	-0.377761510183645	0.158587212585937	0.530400126017003
Merged-chr13-30749225-4	chr13	30748733	30749733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013674)	promoter-TSS (NM_013674)	0.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	6.69064134210661	6.70289736791231	6.38860660671496	6.47405894124653	6.98289738345882	6.26027958266866	0.0281666582124743	0.929574793385313	0.984182996007117
Merged-chr17-49432545-4	chr17	49432042	49433042	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	4178.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	4.53543575484074	4.46279013333094	5.24401880388666	4.52869976272907	4.19435694277863	4.71212404531081	-0.70744510940456	0.157921866671885	0.529476893092205
Merged-chr10-18022471-4	chr10	18021967	18022967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028440, intron 1 of 2)	intron (NM_028440, intron 1 of 2)	623.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	6.80256185124589	7.16025859112557	7.06608782542547	7.12185818214876	6.83295147320155	6.66737172465721	-0.191657874370913	0.485542095735164	0.827504186777075
Merged-chr10-80017595-4	chr10	80017099	80018099	+	935.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 1 of 22)	intron (NM_001347074, intron 1 of 22)	684.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	4.92512738769596	5.38442718023938	5.51549763414913	5.26532833563653	5.32252230489474	5.04810336362307	-0.135798671782465	0.726711618666451	0.929994161273424
Merged-chr9-57077027-4	chr9	57076528	57077528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152107)	promoter-TSS (NR_152107)	652.0	NM_011378	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	7.69102970056694	7.56543668293282	7.94891007392128	7.46102183200545	7.46253256102963	7.8247172287556	-0.219743224422664	0.380949264828502	0.762907083873258
Merged-chr19-8803664-2	chr19	8803164	8804164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098237, exon 2 of 2)	exon (NM_001098237, exon 2 of 2)	1134.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	4.2484764341167	4.34424554081738	4.93288451501953	4.51087749817606	4.41489130239544	4.73403772506952	0.0501739418646718	0.917458184572699	0.981619611552072
Merged-chr11-5512522-4	chr11	5511977	5512977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-8164.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	8.12829329669383	8.48801774369057	8.24620379856549	8.09005460058201	8.65735466613268	7.99232457733677	-0.00975260240142161	0.971298760770099	0.993727127580947
Merged-chr2-35342762-3	chr2	35342275	35343275	+	904.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5766.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	3.01807313048317	2.91000685274892	3.05506625022977	2.90917724358738	2.85315363857723	2.95111727913935	-0.439509493940937	0.519102058093956	0.845629761325035
Merged-chr13-37857273-2	chr13	37856773	37857773	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	29880.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.9375008999754	7.0054717469467	6.87907483743869	6.84652198015117	7.17815363906224	6.5584522632459	-0.0646415520861814	0.818345176283962	0.956926747378422
Merged-chr4-3082678-2	chr4	3082219	3083219	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89364.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	2.39106588907868	2.49077262146712	2.67341873140534	2.39102201690459	2.44147996950794	2.56457762414529	-0.324574852393238	0.686635155259663	1
Merged-chr9-41162608-4	chr9	41162093	41163093	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4531.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.10815215657015	5.42575776791263	5.58917998451924	5.69889304581553	5.95398522940627	6.09406907616131	1.00212362174237	0.00382937778816027	0.0503293108509303
Merged-chr6-91489072-4	chr6	91488566	91489566	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028766)	TTS (NM_028766)	15315.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	3.87376732906754	4.41658581403572	4.14867090576646	3.62334577142921	3.45644321698439	4.03537413130862	-1.39191413069366	0.0176527580205247	0.14869919916702
Merged-chr2-60813199-1	chr2	60812699	60813699	+	557.0	f0_balb.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	68239.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.18467613089174	4.01947286753356	4.10322022505121	4.00099560648113	4.20824116112163	4.21736356581881	0.119955191449405	0.802315711133078	0.953197339007501
Merged-chr17-65771199-4	chr17	65770670	65771670	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	1582.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.09951323842024	5.90744749492778	5.82582637854415	6.17646688533503	6.15890964857496	6.28997139679388	0.425681775953217	0.145879880052627	0.509302356675446
Merged-chr2-122743625-3	chr2	122743129	122744129	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	5124.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	4.68301630660504	4.25273482523685	4.34249357348281	4.51716967266204	4.42188191509029	4.22070239111083	-0.119765774420915	0.797631300768725	0.951799370596145
Merged-chr18-80702652-4	chr18	80702143	80703143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	5530.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.63004951330028	6.82415057682219	6.58934252018713	6.28195208022348	6.12144933233948	6.36094520018931	-0.714409731157253	0.00884931504234847	0.0924693967152746
Merged-chr6-113625290-3	chr6	113624792	113625792	+	834.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 1 of 2)	B1_Mm|SINE|Alu	1271.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	3.81487501843469	3.83833702182132	3.87589242133607	3.86726891411031	3.98648551036264	3.84387997888899	0.201673956532817	0.691987604389575	0.918541547639936
Merged-chr19-37608647-1	chr19	37608147	37609147	+	741.0	f0_balb.idr	intron (NM_175353, intron 17 of 21)	MTE2b|LTR|ERVL-MaLR	58229.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	3.3793519792128	3.23925267729524	3.50186658975753	3.09264970975533	3.06820012477362	3.192283672375	-1.08911680741489	0.0883362263099474	0.394497677050134
Merged-chr17-67349533-2	chr17	67349033	67350033	+	851.642822	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	4926.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.89878505167136	6.62842533393247	6.54144298777862	6.79921563562541	6.99743431377243	7.05393638070869	0.383431453552899	0.15037062601585	0.517246479850651
Merged-chr16-91357137-2	chr16	91356637	91357637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15646.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.98243644797392	3.57909906902843	3.9030067806066	3.38511479777498	3.97454147723441	3.82507090235898	-0.239817516640727	0.692666579225143	0.91870248759071
Merged-chr1-135735516-4	chr1	135735019	135736019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	6352.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.69439168844888	5.56301124771954	5.41212634245337	6.14310401032908	6.02573625917863	5.44433608465532	0.63050326971807	0.0769460941675334	0.365562495221263
Merged-chr2-118547796-8	chr2	118547288	118548288	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311140)	promoter-TSS (NM_001311140)	-189.0	NM_001311140	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.73032365566201	4.29012900035557	4.29394712049207	4.95258200945059	4.82069437196919	4.68036836308019	0.85556098779586	0.0559328416470778	0.304457880879889
Merged-chr17-69227498-2	chr17	69226998	69227998	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	49708.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	3.3108882349911	3.43971248950752	3.28754414222936	3.44922110167546	3.04649078732516	3.77367434051197	0.389045666153134	0.5627153950351	0.865755360453189
Merged-chr11-6562518-4	chr11	6561960	6562960	+	954.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 2 of 9)	intron (NM_001190344, intron 2 of 9)	2277.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	5.67005461669009	5.58119875973267	5.80671479168473	5.46778539759581	5.32142845123776	5.35194178907771	-0.577566871447417	0.0788729195683253	0.371013505084584
Merged-chr3-89775407-2	chr3	89774907	89775907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1798.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	4.89294257311466	4.76033337722084	4.52605437733771	5.02779358988814	5.2126365958959	4.59609049853193	0.532151898800787	0.221069522062715	0.61561513090473
Merged-chr5-146798223-4	chr5	146797725	146798725	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3269.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.16372419141125	4.86961164999565	5.39216750124246	6.12012564786168	6.18324298532267	5.9831552301575	1.7962252727314	1.40351352391837e-07	9.63560670777228e-06
Merged-chr17-31002780-4	chr17	31002277	31003277	+	890.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	48094.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	5.85378408305423	5.68718407684208	5.46840272274216	6.16676643352984	6.51372317695874	6.07509806819956	1.01613158417067	0.00179534110341083	0.0284221351850473
Merged-chr6-91473974-1	chr6	91473474	91474474	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	223.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	5.81901653356481	5.93136815211554	5.96195226246404	5.90035075901856	5.96996059271793	5.51456451084692	-0.138559697175212	0.66595042426325	0.907947624137969
Merged-chr10-128565393-4	chr10	128564922	128565922	+	975.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011119, intron 1 of 11)	CpG	512.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	6.79248324848481	6.80213394162881	6.58213662972939	6.38970227860812	6.71262522113128	6.40183600043207	-0.339485479418282	0.217514253914115	0.611491521038101
Merged-chr12-99333278-2	chr12	99332778	99333778	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	B4A|SINE|B4	116796.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	2.96200392017282	2.88191426822912	3.30889835655451	2.94413003887725	2.76790831511839	3.1116845467539	-0.52766118935715	0.46293269186386	0.81552523499689
Merged-chr2-173224214-4	chr2	173223707	173224707	+	913.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022995)	TTS (NM_022995)	-5285.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.26778645818221	3.06576277766187	3.26695063444181	3.40733299109486	3.28620925511237	3.3944340499473	0.652676190708871	0.29321669417966	0.690196017357506
Merged-chr3-43215879-1	chr3	43215379	43216379	+	636.0	f0_balb.idr	Intergenic	Lx|LINE|L1	1473261.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	2.51385554072416	2.37824920753805	2.37074002691045	2.50537746540821	2.65297584317403	2.64030438272715	1.06281269697418	0.188227459507383	1
Merged-chr2-164879390-4	chr2	164878894	164879894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	26.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	8.37174840424283	8.28105894289543	7.98197076218871	8.07246146383437	8.15045181106454	8.11837900336547	-0.160390120042149	0.471705960643908	0.820254709994237
Merged-chr8-120363949-4	chr8	120363461	120364461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-124905.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	7.12640864257169	7.175108022374	6.7533481396152	7.08686379991079	6.96694002848587	6.44670368291436	-0.253878733050737	0.395107899639115	0.772579826044138
Merged-chr15-38074721-2	chr15	38074208	38075208	+	559.5	f0_balb.idr|f1_balb.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4146.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	4.25655178961548	4.06382684039266	3.81451112979391	4.14253939832118	4.00124702440959	3.71657766642909	-0.279762865925844	0.605652105943225	0.883581756351046
Merged-chr3-109265884-2	chr3	109265384	109266384	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-74799.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.14907446867764	3.35714671964482	3.30227660398969	3.17033630176188	2.92624626371376	2.82174712295397	-1.28617461184709	0.0694110826061	0.344809394715724
Merged-chr13-107056528-4	chr13	107056034	107057034	+	961.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	33964.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	3.59225423682705	3.33873342201209	3.38212497387249	3.62799006159278	3.97331152312943	3.57254037189942	1.05103761501362	0.0785318656040047	0.370120615869613
Merged-chr14-70062299-5	chr14	70061897	70062897	+	977.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15048.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	7.27366254925866	6.6912999996351	6.7976168513163	7.19207682069302	7.30913692657254	6.99011203434995	0.336959558209323	0.239597434176077	0.636557606855969
Merged-chr7-101970203-4	chr7	101969678	101970678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 1 of 24)	CpG	335.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	7.25427798389103	7.2368944732378	7.39100197960775	7.31880689123205	7.28194501363315	7.43767724792063	0.0775089967157659	0.736908034755034	0.933367487988201
Merged-chr16-55888013-4	chr16	55887523	55888523	+	699.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	7256.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	3.22678507917229	3.23094199151437	3.28648502187923	3.42382385577241	3.36591401159669	3.30080555594499	0.483141028092308	0.424261764207226	0.792602112765787
Merged-chr5-115011047-4	chr5	115010553	115011553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029012)	promoter-TSS (NM_029012)	-471.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	6.77085479194725	6.48492071467752	6.51002058456384	6.71735180875898	6.23261039495414	6.40280686087498	-0.214164221144314	0.466042673868609	0.817300963332966
Merged-chr14-72532803-3	chr14	72532277	72533277	+	707.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	177226.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	2.17103570944946	2.06476447954677	2.37109920349837	2.03273425950908	1.92667143203126	2.25720594350349	-0.965840391931794	0.311415352434235	1
Merged-chr5-9101132-4	chr5	9100651	9101651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 1 of 4)	CpG	414.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	7.50526945439592	7.09868390686558	7.11977014706525	7.47731213775392	6.90826232780914	7.26275102557404	-0.0372552106917017	0.895683057830576	0.975665889379756
Merged-chr7-3948388-1	chr7	3947888	3948888	+	802.5	f0_balb.idr	Intergenic	Intergenic	-32887.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	3.11781235409672	3.11087191872019	3.15594307635525	2.86190928888781	2.92125592974897	2.86909447212948	-1.14225051157795	0.0957168663440548	0.412476865756846
Merged-chr7-126428265-2	chr7	126427765	126428765	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030566)	promoter-TSS (NM_030566)	-502.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	4.76329969462458	4.77525064339969	4.92569144277525	4.62160353240105	4.53286381890531	4.69705586213661	-0.481959139828996	0.230864353089722	0.626561893469766
Merged-chr7-28826067-3	chr7	28825514	28826514	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016772, exon 2 of 10)	exon (NM_016772, exon 2 of 10)	676.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	6.42287071809094	6.89506343546511	6.27453170089089	5.82766685704603	6.08690866161784	5.81494468557298	-1.07229391397449	0.000982641325337374	0.0177702250178279
Merged-chr4-150367019-4	chr4	150366509	150367509	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	85093.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.46431700244063	3.32513038251832	3.30679517674461	3.00741945037246	3.0791500565365	3.3779200368217	-0.880622989967756	0.175833704248293	0.555838115002353
Merged-chr1-64338775-4	chr1	64338261	64339261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-194043.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.42692752027902	5.8357439254006	5.35904318095595	4.82520055899727	5.14532339716745	4.6178620881387	-1.34769306094837	0.00127953348943664	0.021826039891153
Merged-chr10-17485606-3	chr10	17485114	17486114	+	888.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-237614.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.66142657820965	3.8432676114937	3.82335713046297	3.40847945227621	3.69195237654056	3.21403059851132	-1.09213287659026	0.0885976775288179	0.395135099523925
Merged-chr2-148406059-2	chr2	148405559	148406559	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009378, exon 1 of 1)	3' UTR (NM_009378, exon 1 of 1)	2129.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	2.6920217953844	2.65204346839831	3.08250115860277	2.77244541842675	2.60510129412467	2.87301023736274	-0.337794377760109	0.658159461675236	0.904937992416562
Merged-chr2-155044721-4	chr2	155044217	155045217	+	728.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	MTD|LTR|ERVL-MaLR	29780.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	2.79843018638058	2.72369415859871	2.95332486670277	2.89613084951034	2.73048987364927	2.84739671425429	0.00159667055803106	0.99821913128776	0.999590080903912
Merged-chr10-68135491-2	chr10	68134948	68135948	+	762.216675	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	143278.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.10994759795114	5.87593478659763	5.89702332166061	6.15508776593496	6.03386038157997	5.36727151775377	-0.101208035080922	0.777668810732133	0.945211972178958
Merged-chr18-46357102-4	chr18	46356598	46357598	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45170.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	3.67421721374709	3.50429739884929	3.59070403187383	3.99869467797793	3.71752679794609	3.71724366644438	0.760846027201876	0.16825426481004	0.544708616695738
Merged-chr12-51687669-2	chr12	51687169	51688169	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	ID_B1|SINE|B4	-3297.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	3.10380806628904	3.14055065596136	3.00251473310904	3.25851102131441	3.12439421227114	3.47237505839457	0.837702754112371	0.201605597064021	0.591133924889107
Merged-chr15-100621896-2	chr15	100621396	100622396	+	899.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_174992, exon 4 of 4)	exon (NM_174992, exon 4 of 4)	6234.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	6.08838081142871	5.62255389707213	5.98647956468156	5.79286343161111	5.65576708075997	5.9802725902295	-0.185826331037426	0.573930091119552	0.870428851774368
Merged-chr2-36232210-4	chr2	36231714	36232714	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	1788.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.86596820108602	6.9470560014187	6.53340594200025	7.13425018575492	7.21463055250896	6.66608547876994	0.358774631144598	0.215231651294164	0.608590588265361
Merged-chr12-75738643-3	chr12	75738153	75739153	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2924.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	5.77220691091275	5.87876789737253	5.53392633275554	5.92100274686935	5.8268703100509	5.65617170722875	0.115701376159781	0.718033150385321	0.927249469209724
Merged-chr8-88668764-4	chr8	88668276	88669276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	21429.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.61878748037553	6.33668867223442	6.62188666414631	6.39892964691948	6.41609024553514	6.6647760267722	-0.0591990767854527	0.831382813204773	0.960444904168444
Merged-chr4-53113412-2	chr4	53112912	53113912	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	46483.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.81354211969012	3.89252554306243	3.96146888051303	4.19456320086872	4.0461986246356	4.03057125068783	0.623728126262686	0.20694702187534	0.597726047765818
Merged-chr6-86849805-2	chr6	86849305	86850305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	288.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	8.1664099326755	8.32090973430884	7.91052797427528	8.09236016138835	8.04021942914952	7.81601398154165	-0.222386823834077	0.342571011148679	0.731471837188352
Merged-chr3-75556392-4	chr3	75555870	75556870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 1 of 7)	CpG	482.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	7.60046749736867	7.62095167151609	7.6010675234411	7.79930285078107	7.94925405687334	7.69495298004263	0.312876474250752	0.15689382776079	0.527761038035113
Merged-chr11-118248686-4	chr11	118248185	118249185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-93.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.13520162422949	7.93054825426961	7.63144466976158	7.84123231917751	8.07081363625344	7.38851647087824	-0.162182340698889	0.563334348160326	0.865926383742263
Merged-chr1-134418670-4	chr1	134418161	134419161	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2997.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	5.98770561187356	6.38476148438982	6.60573032394788	6.12604554144963	6.41589203981327	6.60157847882196	0.0795027102448858	0.804647084203775	0.953651704501661
Merged-chr6-72737090-4	chr6	72736588	72737588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	MIRb|SINE|MIR	51957.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	6.32270505422863	6.3230738846698	6.38651078639684	7.45304115634929	7.59728925444917	6.92752650827795	1.58283939185351	2.43253384052196e-08	2.02406275802151e-06
Merged-chr13-105218786-1	chr13	105218286	105219286	+	803.0	f0_balb.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	74228.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.19474720869497	3.92455350821623	3.94766773997643	4.25734290400172	3.9550723778024	3.96673902935672	0.10426799870101	0.837071023335096	0.962035641067236
Merged-chr7-101363624-4	chr7	101363129	101364129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-14493.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.63501154686831	8.5217057928692	8.09877399371651	8.20712130377872	8.33937933412449	7.74968334970164	-0.437904397642617	0.104177588784237	0.43049308738373
Merged-chr10-62541711-4	chr10	62541141	62542141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14196.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.52830168962994	4.79623722302431	5.24905008239827	5.22993731994402	4.77334797558075	4.78154226181281	-0.602310046509321	0.173056692469067	0.551792788730798
Merged-chr7-141195004-4	chr7	141194514	141195514	+	877.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153777)	promoter-TSS (NM_153777)	-129.0	NM_153777	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	3.29472478944639	3.15388450187745	3.5895659702173	3.17831308910107	3.23451873625569	2.98954110419436	-0.856500542357501	0.205234066757688	0.595851926963492
Merged-chr10-19291749-3	chr10	19291244	19292244	+	648.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64795.0	NM_053008	94222.0	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	2.59587389374296	2.45458832951388	2.79793028961715	2.55414354531357	2.38199266318158	2.63170873293159	-0.558639240435456	0.487469312906831	1
Merged-chr8-120570452-4	chr8	120569912	120570912	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 8 of 15)	intron (NM_001145896, intron 8 of 15)	18663.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.18895752392426	2.95682192836615	3.1225815605427	3.3959940502587	3.18699993967041	3.19569941363049	0.728174336988883	0.263381610098101	0.661383847170923
Merged-chr5-113007543-2	chr5	113007043	113008043	+	883.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	7995.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	3.24391052376298	3.25131060945746	3.74620161384655	3.40630056726705	3.21117509037384	3.41694425014954	-0.312952114184889	0.625142111344195	0.892441148830384
Merged-chr4-132599945-3	chr4	132599453	132600453	+	647.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	35886.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	5.52737537399347	5.47976474416997	5.23230710335898	5.79836579258348	5.54907633720678	5.39778369088389	0.318875958627252	0.357365595917641	0.743931262793402
Merged-chr1-92473157-2	chr1	92472657	92473657	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024197, intron 1 of 9)	intron (NM_024197, intron 1 of 9)	601.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	6.69455829507927	7.45660291912931	6.80497767862783	7.0199001690979	7.15050017919128	6.75109741034626	-0.077945353186473	0.806055709784699	0.954102910475772
Merged-chr2-25461104-4	chr2	25460629	25461629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153557)	promoter-TSS (NM_153557)	-35.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	6.16686580235024	6.23783763330865	6.17542231937945	6.24967986910665	6.32281385297518	6.1934431754116	0.110787590108108	0.687602925012735	0.917193226920892
Merged-chr14-31256269-2	chr14	31255769	31256769	+	561.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027088, exon 11 of 17)	exon (NM_027088, exon 11 of 17)	4780.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	1.76787186775319	1.70237707496267	1.92757940507417	1.71519655000794	1.49710090148427	1.66029784261643	-1.80615766996297	0.119739161837191	1
Merged-chr2-70824705-1	chr2	70824205	70825205	+	598.5	f0_balb.idr	intron (NM_172664, intron 1 of 19)	intron (NM_172664, intron 1 of 19)	775.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	7.55742851230098	7.55235513325866	7.42142922814691	7.41358479354149	7.21960852584856	7.29045035827783	-0.304586186688537	0.184038899184034	0.567650287433271
Merged-chr1-59476430-2	chr1	59475927	59476927	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5720.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	3.78916076211059	3.65295468016923	3.81538151566264	4.35794454793585	4.6484108554788	4.18528345468738	2.12661568254725	4.72805042203511e-05	0.00150617005940543
Merged-chr2-126996938-4	chr2	126996405	126997405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11806.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	4.26750471358293	4.22979289707794	4.34092629046402	4.31391596903356	4.6599393309977	4.61494678731692	0.678941672065694	0.128736848176681	0.479799601167289
Merged-chr18-11701004-4	chr18	11700506	11701506	+	737.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	intron (NM_001081223, intron 6 of 18)	43657.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.7620346811598	3.41107250081569	3.86936059603391	4.1507278017803	3.67597403727112	3.88979255904887	0.728597691222495	0.208540526632988	0.599490072208591
Merged-chr13-3895892-5	chr13	3895433	3896433	+	919.5200199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-2352.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	3.61323805855105	3.38210226950272	3.31274023066028	3.37595107491607	3.02497893086721	3.32735041866822	-0.790967320367826	0.221291760876601	0.615806991037765
Merged-chr13-59004705-4	chr13	59004210	59005210	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197013.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	6.98598084626521	7.19570257989734	7.17608240552267	7.10511819161445	7.33452282267478	6.88354812755588	0.0169036895967494	0.948170828955855	0.988082186378433
Merged-chr13-58488098-3	chr13	58487589	58488589	+	790.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84746.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.08170997240142	5.91808222161499	6.03631987534481	5.98458606088232	5.94149242347224	6.09682468406511	-0.0152691469183522	0.958244451815385	0.990000537228272
Merged-chr9-113756209-2	chr9	113755709	113756709	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	14736.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.33421425881614	4.10127282129137	4.48009069753595	4.14727006710685	4.21533528583356	4.50645411401936	-0.0427325653733334	0.928471366975677	0.983805082305829
Merged-chr1-93512034-4	chr1	93511536	93512536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145519)	promoter-TSS (NM_145519)	-68.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	5.62472611716383	5.46106277284205	5.54646275630966	5.59951090882774	5.30779745779218	5.49481182157964	-0.149956921007663	0.653545264024373	0.903427295126087
Merged-chr3-96226915-4	chr3	96226433	96227433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	5861.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	7.32256168318588	7.28338992157063	7.05389418879309	7.27257907927633	7.64642594849791	6.99949859335189	0.172980578366434	0.533431590594589	0.852457858765356
Merged-chr14-75068908-4	chr14	75068430	75069430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	MLT1D|LTR|ERVL-MaLR	52903.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.55931569403133	6.50657457619693	6.5007096181419	6.76444125401659	6.82465122520919	6.87844120196317	0.470187842286075	0.0619359188869285	0.323147977097037
Merged-chr10-77984263-2	chr10	77983763	77984763	+	601.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026431, intron 6 of 6)	intron (NM_026431, intron 6 of 6)	5613.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	2.87246705696235	2.62337537874375	2.75428312559829	2.47810601063558	2.57376389417237	2.64124796904256	-1.07013133572015	0.169746450803949	1
Merged-chr5-141084498-4	chr5	141084006	141085006	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83910.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.57609322201044	7.79938911580545	7.52741572642671	7.61889163397986	8.02156594961928	7.62362855401169	0.192111583956311	0.441143474811209	0.802331502777947
Merged-chr6-108662318-2	chr6	108661818	108662818	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011498, intron 3 of 4)	intron (NM_011498, intron 3 of 4)	-1384.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.00611007269425	2.92646845268453	2.98567518344994	3.06222905319145	2.81579263738293	2.80947984484201	-0.339626714592511	0.627400773903061	0.893213626166477
Merged-chr1-120080886-4	chr1	120080374	120081374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7094.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.24909967383843	4.1250184536001	4.24269197715022	4.24179203814314	4.027638140577	4.2657776481794	-0.0825705193258762	0.860626440280223	0.967588655430938
Merged-chr7-117495047-2	chr7	117494547	117495547	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	114068.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	2.29511911839636	2.08171133770262	2.45018276225743	2.05009951763508	1.8658439772552	2.20858622654623	-1.83922870549503	0.0772110319918303	1
Merged-chr2-173535457-4	chr2	173534968	173535968	+	947.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	12876.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	4.92458329559797	4.80810711207803	4.98828223554601	5.30552264480794	5.30856021749453	5.01748959295827	0.682596926185482	0.0663002439162065	0.33620173605056
Merged-chr2-58532402-4	chr2	58531928	58532928	+	869.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	28982.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	3.32847370929836	3.42814623072038	3.47325233860197	3.46165522930348	3.4158628902705	3.319927186825	-0.0209799311053098	0.971664405883777	0.993783614343214
Merged-chr6-86585293-4	chr6	86584818	86585818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42856.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	8.11827349778591	8.22197743553787	7.71260620400486	7.94642348353457	8.30725520529168	7.84052088244366	0.0165208783019044	0.949643489723555	0.988243921877722
Merged-chr12-40576618-3	chr12	40576141	40577141	+	803.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	130588.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.01838737464592	4.2046719436955	3.83794894922153	3.96353812311762	3.5993462445996	4.1510839006101	-0.354863729033806	0.520289978765002	0.846311592349268
Merged-chr15-73743335-2	chr15	73742835	73743835	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-4691.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	2.23005181088072	2.33191009273852	2.50662230145811	2.46243292431397	2.06486385558274	2.18744341055827	-0.724509918069325	0.432734334081657	1
Merged-chr7-16817469-2	chr7	16816969	16817969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-737.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	3.90438674727563	3.96623014052068	4.04278405421431	3.82595500873221	4.01722623475433	4.06430736440258	0.0100997463804182	0.983879712740986	0.996443902142547
Merged-chr8-25071012-2	chr8	25070512	25071512	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	30799.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	4.8605079423491	5.16270450078096	5.20961127292719	5.11037826520856	5.14425557600608	5.42046932924685	0.294256768156642	0.434358963351108	0.798368469682329
Merged-chr8-34807226-4	chr8	34806703	34807703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176933)	promoter-TSS (NM_176933)	-407.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.9166764286141	5.87535823254129	4.98826085238867	6.08583289475771	5.64355933837265	5.29758156189226	0.117231789140844	0.87187345314057	0.970261003150518
Merged-chr1-87214831-2	chr1	87214331	87215331	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039169, intron 1 of 6)	intron (NM_001039169, intron 1 of 6)	892.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	6.55370722356933	6.54241839761121	6.3778014842561	6.77580727522648	6.61251648508314	6.47607378360986	0.210736388946965	0.431816318376097	0.797102108819786
Merged-chr4-55366216-4	chr4	55365723	55366723	+	909.1333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	MTC|LTR|ERVL-MaLR	16181.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.53442129582278	3.52887841966137	3.66815365330541	3.60908405211875	3.72740188784627	3.88471894571662	0.571809079446989	0.299026297872772	0.695846413105059
Merged-chr15-59727172-2	chr15	59726672	59727672	+	877.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67787.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.51322197377214	4.00769391742843	4.27550700245521	4.17002506305559	4.31601091813802	3.77606334292617	-0.456708297859416	0.400066245260758	0.776362382142343
Merged-chr12-83958512-4	chr12	83958006	83959006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7898.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	4.1342584368815	4.1933857309218	4.58429555711127	4.451509528056	4.41456156988918	4.27535424897843	0.208536834651515	0.656237666718844	0.904602840326388
Merged-chr4-136053445-4	chr4	136052955	136053955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-84.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	7.08278504726694	7.36265083866605	6.86145310679685	7.17256959023739	6.99890903463582	6.81083939617455	-0.182938678036418	0.503197791936643	0.836874959480513
Merged-chr2-165320635-4	chr2	165320121	165321121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	205.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	7.91565412070307	8.03370668766454	7.9712344498409	7.91085504309849	8.1864207130552	7.88708235191178	0.0481040634259883	0.829263962056137	0.960019419196758
Merged-chr10-9902125-4	chr10	9901623	9902623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1083.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.49694680343297	4.29003463293735	4.66823167984831	4.32395258890538	4.55898213764275	4.49777133309045	-0.0460782264864621	0.917711658306571	0.981718564389729
Merged-chr2-129591496-2	chr2	129591024	129592024	+	665.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1315.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.1187362877937	8.07487937028569	7.8320646634472	7.7731858452342	8.22541495750988	7.74886149033015	-0.105651657239611	0.674757557633519	0.911862971083769
Merged-chr2-156730653-4	chr2	156730146	156731146	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	9367.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	7.29771009294774	7.43733163375425	7.33230617286452	6.89947335968128	7.12994152545767	7.34638455933978	-0.336878252139682	0.178669710343447	0.560022415863315
Merged-chr11-95713449-4	chr11	95712963	95713963	+	889.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-709.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	7.7541745091485	7.61393867721616	7.61573027628847	7.92163740080955	7.59451657013526	7.6908690385534	0.112310490655693	0.627039059645997	0.892988961867358
Merged-chr1-165707489-3	chr1	165706985	165707985	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	609.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.04994048040951	7.04565599240885	7.31569198507564	7.28025307127374	7.43638027194958	7.21298127427862	0.274159266678956	0.261523706137688	0.659274772798192
Merged-chr1-136430352-4	chr1	136429859	136430859	+	939.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026500, intron 4 of 7)	intron (NM_026500, intron 4 of 7)	-14840.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	3.96709293951468	3.93526930668544	4.24558913296309	3.77577519966136	3.90066847680731	3.90437847051209	-0.565768710227461	0.269879133736131	0.666912813996937
Merged-chr17-12988165-2	chr17	12987665	12988665	+	675.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	B1F2|SINE|Alu	4094.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	3.12170629912659	3.18388538916809	3.20624317854333	3.10968390736922	3.33213872418495	3.2774201611728	0.318647125961859	0.613784476699983	0.887300906025089
Merged-chr14-36969406-2	chr14	36968906	36969906	+	581.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-642.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	5.39025364217918	5.50005201289262	5.47531135564486	5.67423130679923	5.73845754566271	4.75327255771485	0.0319650325884541	0.941197623258	0.986908937621943
Merged-chr18-39542035-4	chr18	39541527	39542527	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54782.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.15331375561439	3.18148114178848	2.98839983184634	3.20571793570831	3.01105917753198	3.45901058364298	0.492000869486103	0.465835378043666	0.817215071372066
Merged-chr17-43061420-3	chr17	43060941	43061941	+	955.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44886.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.45488571165867	6.46882655608875	6.22462580265977	5.4347682387123	5.3490118237674	5.64492327574869	-1.63956467889536	9.27153554869766e-08	6.67358070878923e-06
Merged-chr10-95519384-2	chr10	95518884	95519884	+	665.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	4222.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	4.15098350333738	4.0258386740847	4.55231405884061	4.20967315398587	4.26123074035734	4.54196866453094	0.235369783265853	0.631556474858581	0.895219738483912
Merged-chr10-13191591-2	chr10	13191091	13192091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 2 of 10)	B3A|SINE|B2	1546.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	3.39795563165196	3.17111950656384	3.40291585792042	3.48234807636435	3.48019898969344	3.36162470145501	0.465485203114085	0.440584101925017	0.801886710894642
Merged-chr14-17427068-3	chr14	17426560	17427560	+	930.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-233900.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.51021403021184	4.8111687049555	5.29654545779724	4.89952466416054	4.65724998557216	4.89110471018907	-0.19179608795307	0.668760609674662	0.909385903315998
Merged-chr14-51082875-4	chr14	51082316	51083316	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8261.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	6.89991444082437	6.96706002670509	6.51755800517355	6.7251215695346	6.18907042172081	5.93214831479486	-0.766853474104378	0.0223158445976267	0.173558436239841
Merged-chr19-11810602-3	chr19	11810092	11811092	+	742.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	8811.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.12159911134877	5.14883062409478	5.79779452657369	5.08724092259567	5.15257895177143	5.44104524124577	-0.304163120753503	0.451818692083676	0.809245753174589
Merged-chr6-120189438-4	chr6	120188935	120189935	+	942.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-4388.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.63425854785505	3.51630364273511	3.98284418305326	3.63507302942159	3.46551485773821	3.61866815654426	-0.499642680098863	0.387581283705984	0.76768118438771
Merged-chr5-136919099-4	chr5	136918579	136919579	+	963.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015555)	promoter-TSS (NR_015555)	-67.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	5.42231689298833	5.33962047723726	5.31290745549025	5.0521183687683	4.86598601335923	5.04614749679053	-0.782745834757285	0.0284340477782625	0.201878806167816
Merged-chr3-33844320-4	chr3	33843826	33844826	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026222)	promoter-TSS (NM_026222)	-16.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	3.03472239110775	2.98205304301511	3.31537476240685	2.90789294852195	2.81007743856802	2.99959732404074	-0.982496764480462	0.158935505076674	0.530878146458186
Merged-chr8-40598099-4	chr8	40597591	40598591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 3 of 13)	MER33|DNA|hAT-Charlie	36701.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.21333608343547	5.58875161563998	5.54082589780912	6.51919878392256	6.86630862779938	6.62573753829697	2.10944376365733	2.26719059861121e-11	3.44878236433714e-09
Merged-chr9-114794702-4	chr9	114794194	114795194	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12701.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	6.02344137886723	6.18085172286561	5.71392362890878	6.9826034511948	6.94744336463418	6.19964475627566	1.25132584268414	0.000285895573711493	0.00669164525946157
Merged-chr7-99781557-4	chr7	99781051	99782051	+	949.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14387.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	5.59519179794704	5.3941954025527	5.46361553351558	5.59432360731843	5.61457738963323	5.74463692631121	0.300580950970582	0.353383006455995	0.740699612101124
Merged-chr4-126890063-4	chr4	126889568	126890568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357201, exon 20 of 28)	exon (NM_001357201, exon 20 of 28)	77855.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	4.60124244423816	4.83405808190101	5.00710234873541	4.35287238260196	4.56432598101715	4.79881533566975	-0.563441910502331	0.195229109669376	0.582885610090219
Merged-chr4-116626849-4	chr4	116626343	116627343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081475, intron 1 of 13)	CpG	654.0	NM_001081475	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	5.82704933744326	5.92537593247181	6.16256037375937	6.07122364167852	6.32297325354836	6.57894210161664	0.616897713261626	0.0470349291055384	0.274586569916063
Merged-chr17-5798671-4	chr17	5798162	5799162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045081)	promoter-TSS (NR_045081)	5.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.56161984850905	6.5633395065298	6.63294368532409	6.86092500895055	7.0887870897914	6.74093546863746	0.518264268620829	0.046662134070761	0.273350994445657
Merged-chr14-55099377-2	chr14	55098910	55099910	+	649.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153083)	TTS (NM_153083)	4626.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	2.20417883296306	2.23683335423872	2.3786240922044	2.10858977752728	2.13423540815381	2.26179755346157	-0.75036943268951	0.391895515121117	1
Merged-chr17-5606876-2	chr17	5606376	5607376	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	114276.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.70835213557308	5.40825673732196	5.54209095036049	5.03589592583777	4.84940905955822	5.49545967493287	-0.833047598055192	0.0309707609733231	0.213011661354626
Merged-chr10-54118987-2	chr10	54118487	54119487	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43065.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	7.44795943326437	7.48210752132397	6.89688030045138	7.14067214160233	7.22756202883406	7.39821211046832	-0.0848104466601442	0.756385093551555	0.939573416808291
Merged-chr8-77610769-4	chr8	77610265	77611265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145599)	promoter-TSS (NM_145599)	-112.0	NM_145599	234463.0	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	3.93838449999764	3.9965873085671	4.05408302937705	4.04473224620054	3.71076010321653	4.1670815300541	-0.0512009675821196	0.921421404338768	0.982542868764899
Merged-chr4-150238456-1	chr4	150237956	150238956	+	850.0	f1_balb.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1132.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	5.7401544483153	6.11164015145732	6.33042326644149	6.32687580194232	6.37704797374105	6.17211910988767	0.381016317705014	0.223403766822717	0.618087468987021
Merged-chr8-46740572-4	chr8	46740101	46741101	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	CpG	856.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	8.23922234708586	7.99513953037176	8.05002913483464	8.36593414306277	8.12598257707791	8.37505476698917	0.267402340026134	0.22691580969913	0.621890618706186
Merged-chr7-105810029-4	chr7	105809548	105810548	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025301, exon 3 of 3)	exon (NM_025301, exon 3 of 3)	1039.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	6.42573118928988	6.5770337753532	6.48916852443884	6.46472052291662	6.49510214736898	6.36178448442438	-0.0863330875516806	0.744453346842975	0.935982277711273
Merged-chr5-92444306-4	chr5	92443774	92444774	+	796.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007644, exon 12 of 12)	exon (NM_007644, exon 12 of 12)	-9075.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	4.50848513200953	4.35839113508231	4.9409925606816	4.75694555413191	4.56376695653662	4.68530762225875	0.132468737846547	0.766152853613482	0.942366894267556
Merged-chr11-34727605-2	chr11	34727105	34728105	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033374, intron 5 of 51)	intron (NM_033374, intron 5 of 51)	56300.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	3.98730482694557	3.81759196599927	3.90768211974189	4.30350401945597	3.77806864800067	4.12308561901098	0.522122978510989	0.322827230687806	0.71622978868066
Merged-chr16-20621523-4	chr16	20621015	20622015	+	937.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028420)	promoter-TSS (NM_028420)	-237.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	4.56744627036773	4.47355660487882	4.09734669139888	4.59359814877431	4.43667151971336	4.27120032022769	0.0981524864100734	0.835425103494004	0.961706261746066
Merged-chr2-180966225-3	chr2	180965725	180966725	+	855.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-1000.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	3.94236027570639	4.26052836675083	3.89055121364601	4.24611107034002	4.40777675566074	3.90784297043787	0.459543824436168	0.382578651631226	0.764107846408276
Merged-chr9-21321588-4	chr9	21321110	21322110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	891.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	6.91282886667684	7.07233852776982	7.06773450630285	7.10618784271132	7.30639224868968	6.82866850032014	0.135599063136651	0.604767673622596	0.883226183914895
Merged-chr17-26497652-6	chr17	26497148	26498148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10824.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.72753240376303	7.55056860605659	7.38145927173916	7.23107333289771	7.41020740273395	7.37277270888927	-0.331388747795642	0.164969565972174	0.539619859029508
Merged-chr12-83632174-4	chr12	83631674	83632674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027349)	promoter-TSS (NM_027349)	-60.0	NM_027349	67039.0	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	7.85901440065439	8.45109213032741	7.8880083023059	8.01527788309409	8.29054467536309	8.02217801750192	0.0225366282243142	0.932368814983276	0.985087224393733
Merged-chr5-140116892-2	chr5	140116392	140117392	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58026.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	7.02081371160925	7.00711468434285	6.78661849140867	6.72475440649256	6.56920123780384	6.52601067741264	-0.52719397390996	0.0404094846718472	0.250457534493487
Merged-chr8-128590433-3	chr8	128589899	128590899	+	765.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-95255.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.84136975430699	4.01082689196192	3.90639144723226	3.89589112911086	3.66570292136604	4.15954061453402	-0.0341566801035824	0.949021208199182	0.988169196639905
Merged-chr6-117874977-4	chr6	117874446	117875446	+	933.3624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12065.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	6.08337952363961	6.38654756710721	6.18506361695851	6.1154007333015	6.38889253808507	5.75623393044312	-0.163864833877775	0.614750708791512	0.887600696218698
Merged-chr4-141643724-4	chr4	141643209	141644209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	-19875.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	6.87003285548418	6.92890502062178	6.58863044179843	7.0619846299126	7.54956811564892	6.6484420713049	0.523294022429508	0.101812882115854	0.425710869100299
Merged-chr11-11686759-2	chr11	11686259	11687259	+	972.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	834.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	7.16025698930591	7.86943100199508	6.85108130255815	7.53266702924032	7.45657451878977	7.53595448584478	0.185874054873104	0.563789892700101	0.865992481769395
Merged-chr8-105289576-4	chr8	105289081	105290081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-53.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	7.10098170549527	7.08451129702864	6.88558241701896	7.27724077700817	7.1733120349158	6.91421801049597	0.157155463945691	0.534628697985304	0.853068627162717
Merged-chr10-86781927-2	chr10	86781427	86782427	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2922.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	2.68190219661151	2.69807846854666	2.88406589396984	2.68945717094019	2.58968496749817	2.52107200642455	-0.829909742180464	0.279551753853094	1
Merged-chr19-53460559-3	chr19	53460120	53461120	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	4176.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.01077682890233	2.66171852972399	3.08896078629679	2.58140660800891	2.64488787906822	2.7534132507795	-1.42588943724685	0.0674315996473246	0.339619184277864
Merged-chr9-118675928-3	chr9	118675453	118676453	+	919.111084	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RMER1B|Other|Other	-35739.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.59165682132628	5.40079277218749	6.01742973010618	5.48565295502819	5.46865756165996	5.71724427408158	-0.237547962424648	0.506085320729695	0.838289047715586
Merged-chr4-136898887-4	chr4	136898410	136899410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007572)	promoter-TSS (NM_007572)	-66.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	7.36945805331365	7.30779006582828	7.3892144862041	7.63702101358076	7.70358482773685	7.40291136560596	0.352438187998085	0.127676197162576	0.477726601118668
Merged-chr13-46701698-3	chr13	46701203	46702203	+	729.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175749, exon 12 of 22)	exon (NM_175749, exon 12 of 22)	26146.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	3.02975715769152	3.22008644686509	3.43201086263529	3.20495429851062	3.19694841438107	3.23175571400777	-0.0844569435647036	0.895713598184276	0.975665889379756
Merged-chr2-52987301-2	chr2	52986801	52987801	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	129433.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.48809797567034	3.62458010597522	3.54771180497223	3.44593892792125	3.28003587370659	3.21609835667599	-0.90124471899606	0.135047415607366	0.491193135369921
Merged-chr16-14112376-4	chr16	14111859	14112859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46915.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	6.41604469085321	6.38215203834331	6.5454011483743	6.25672516417413	6.47599204158172	6.3330791055926	-0.131424852716882	0.629782211599827	0.894377678440432
Merged-chr14-105258777-4	chr14	105258272	105259272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190989)	promoter-TSS (NM_001190989)	99.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	7.08947532922148	7.12548150538186	6.4675247325397	6.89913216686334	6.84988243688624	6.80780748354483	-0.134999020198417	0.641765243267585	0.899171520014446
Merged-chr2-71326765-2	chr2	71326265	71327265	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	B1F|SINE|Alu	40789.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	6.43175000731134	6.1405218084669	6.08917608713255	6.45375558636834	6.61715497696359	6.56406933199752	0.50810871613942	0.0724017968270891	0.353420668214738
Merged-chr10-40066670-4	chr10	40066159	40067159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-41391.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	6.2696612752309	6.02978365213512	5.93103508913934	5.74069284567693	5.73098947400202	5.87070542056428	-0.553433387279956	0.0699618188195586	0.346302934344326
Merged-chr1-131103928-4	chr1	131103442	131104442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6099.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.58968726914134	6.32629368694743	6.48689957295998	6.70426204916036	6.70694865191106	7.00614455918004	0.535870900563112	0.0495553466558837	0.283083982187476
Merged-chr10-118095140-4	chr10	118094634	118095634	+	726.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46653.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.76805753201328	6.46562308656406	6.97857802610025	6.29727064556225	6.37447759554755	6.57499464375287	-0.529227940233503	0.0672985190188492	0.339148648227904
Merged-chr19-6973967-2	chr19	6973467	6974467	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	2.77651478595919	2.60164498885089	2.77085032722166	2.53702394094898	2.39167894360316	2.95904663134434	-0.367336221729538	0.656777714181896	0.904693205515276
Merged-chr13-91505638-3	chr13	91505138	91506138	+	934.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	44541.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	4.3406296295082	4.36717292787854	4.50816306909809	3.83379968245672	3.59879140562959	4.01366544104358	-1.77091362882412	0.000612649510425465	0.0123342222268285
Merged-chr2-158174058-4	chr2	158173563	158174563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17945.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	7.57341277362395	7.45939571194303	7.33582806625697	7.27495630800028	7.14223634606535	7.09031974922471	-0.433960911887777	0.0656257341768626	0.334205648411065
Merged-chr18-80198962-2	chr18	80198586	80199586	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 1 of 5)	L1MD3|LINE|L1	1533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	2.15381254584201	2.0239668062066	2.21648323000578	1.90567649362694	2.07162093949164	1.89150224164826	-1.35772745107899	0.178899420164841	1
Merged-chr14-73170088-4	chr14	73169590	73170590	+	882.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27305.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	6.00935680216898	5.96728824430564	6.02956767831289	5.80980263722651	5.73604269702553	5.58146750630821	-0.50102122354469	0.097957389200757	0.417291460898387
Merged-chr7-117487054-4	chr7	117486558	117487558	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 2 of 11)	MIR|SINE|MIR	106079.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	5.34311411232812	5.96387496186767	6.02899827922875	4.9473568590906	5.06689519044436	5.6914571859722	-1.02467364112225	0.0149967912352525	0.132736198819582
Merged-chr6-65043294-1	chr6	65042794	65043794	+	744.0	f0_balb.idr	promoter-TSS (NM_001253392)	promoter-TSS (NM_001253392)	88.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	7.27525939513392	7.54041911288633	7.09350607853436	7.29488730744599	6.99073123663195	7.16414996620992	-0.255969258150192	0.325525633888688	0.718159390122652
Merged-chr12-84760205-2	chr12	84759705	84760705	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 3 of 3)	intron (NM_023409, intron 3 of 3)	12907.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	4.86962007013616	4.8317855968499	5.07019477650586	4.75329314502557	4.77799547466433	4.81994710779787	-0.308290417083316	0.427336418693803	0.794296048630321
Merged-chr10-14130367-4	chr10	14129881	14130881	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164002.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.59303072517122	4.65893340573455	5.23195973748193	4.86672404587481	4.77312912281158	5.11559520146829	0.15927660539639	0.71558446057952	0.926402055104375
Merged-chr4-133674189-4	chr4	133673675	133674675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.35742494742351	6.21700670488273	6.21447932075223	6.33695801021362	6.67768347862697	6.67273266293777	0.497161097690123	0.0766486314742027	0.364755288612704
Merged-chr17-74017353-4	chr17	74016835	74017835	+	791.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053188)	TTS (NM_053188)	30581.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	5.57456030725698	6.23699623174184	5.80671486335517	5.7800379876772	5.59855193776267	5.30507874987562	-0.590308836943178	0.110632042408931	0.444472550082676
Merged-chr17-66110863-3	chr17	66110361	66111361	+	860.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-685.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	4.50434266155538	4.81714792533518	4.62949088270543	4.72930183699415	4.32849006493511	4.53029901542547	-0.30057510090898	0.49456117211717	0.832098209532918
Merged-chr7-83482987-7	chr7	83482536	83483536	+	702.552368	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101895.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	2.86576524029693	3.01001536651627	3.07624771647322	3.06976113227083	3.1546146596013	3.0898561164121	0.561727973671317	0.398455255507079	0.775257562087476
Merged-chr1-156466533-1	chr1	156466033	156467033	+	667.0	f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	B3|SINE|B2	7795.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	4.01000235217541	4.24480867075964	4.3729208435982	3.89556818730322	3.60490912843758	4.003952082279	-1.13626647558007	0.0317672854360359	0.216150804189643
Merged-chr8-71296481-4	chr8	71295937	71296937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	23723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	8.2558405547603	8.32106950179202	8.15920277471025	8.37184600075818	8.58350320310092	8.23494893552503	0.225181308541691	0.303194238926229	0.699862332768671
Merged-chr17-15499838-4	chr17	15499325	15500325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-63.0	NM_013684	21374.0	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	6.3268080368264	6.54808982356865	6.89330394086703	6.92493818663458	7.12053110814454	6.71366323969138	0.527539216743799	0.0710768896175866	0.349754160102533
Merged-chr17-67450633-4	chr17	67450131	67451131	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96140.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.91747506110912	5.87868494123952	5.84224926511021	6.79161767494505	6.71718871120808	6.26115212806059	1.22787110059136	4.08896148124097e-05	0.00133268432013748
Merged-chr14-46761384-3	chr14	46760878	46761878	+	988.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360041, intron 1 of 7)	intron (NM_001360041, intron 1 of 7)	837.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	3.82113182860458	3.84077872777985	4.0252157103422	4.73381934769926	4.51975301432018	3.99128215144394	1.57714015476703	0.00248387534542284	0.0365478867801846
Merged-chr6-114838534-2	chr6	114838028	114839028	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	ORR1D1|LTR|ERVL-MaLR	83293.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.34708338605744	5.22228479536608	5.36894446298436	5.65626958549373	5.52555590489389	5.20283046529667	0.338942001473691	0.334088401121097	0.724748007849347
Merged-chr2-84531466-4	chr2	84530971	84531971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24598.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.29482931227296	6.2306572420769	5.96223455819931	6.08095731040977	6.52331829467724	6.14117356902349	0.161584912997584	0.60243239724692	0.882349532183277
Merged-chr9-45952827-2	chr9	45952327	45953327	+	897.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172257, exon 3 of 26)	exon (NM_172257, exon 3 of 26)	-1159.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	5.44593738622433	5.72097218061158	5.31999295300541	5.2285906467055	5.23416662693215	4.8258463220698	-0.775977616186307	0.0413147290213259	0.253930859241135
Merged-chr18-4304194-3	chr18	4303716	4304716	+	968.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48737.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	4.53505841723756	4.68377722614016	4.33352582151496	4.71496931638725	4.67370183364114	4.70643829280929	0.385041910697268	0.363646715432019	0.749283507853983
Merged-chr8-4676691-2	chr8	4676191	4677191	+	734.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63521.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	3.96851300654839	4.17400950955549	4.18797707617953	3.84116249443652	4.20271179331526	4.29833585912387	0.0433463138441733	0.93144205131874	0.984908441958162
Merged-chr17-71126628-2	chr17	71126128	71127128	+	574.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010867, exon 38 of 38)	3' UTR (NM_010867, exon 38 of 38)	-56904.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.96589059914139	4.98287318437148	4.76001066034662	4.63999780152804	4.87610418502629	4.5743028060904	-0.446849759569677	0.273128253437162	0.670407465738777
Merged-chr16-22119049-4	chr16	22118561	22119561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	44238.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	8.69275862997651	8.99598924736068	8.20999137981485	8.63138255475388	9.0514204305835	8.42084335594544	0.0754254989972553	0.794935590910686	0.950946714902833
Merged-chr11-76622819-4	chr11	76622318	76623318	+	817.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45079.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.00920954149741	7.44295227291059	6.88054148741201	7.03656352862807	7.1469295054184	7.0792660903021	-0.0827159653963893	0.761086925222633	0.941142250203225
Merged-chr14-66236808-2	chr14	66236308	66237308	+	728.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-22984.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.98115838333122	4.60881880028342	5.37894465920149	4.9802588517251	5.06701422581344	5.21002007105586	0.148400518461567	0.725926023815059	0.929743505822386
Merged-chr14-31380019-3	chr14	31379522	31380522	+	735.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37655.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.66348196500382	6.49217434805716	6.53870091896281	6.77128201381779	7.29990081076871	6.84361642784195	0.680005850599056	0.0165625471361938	0.142413601540603
Merged-chr17-32036406-4	chr17	32035896	32036896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028244, exon 1 of 16)	5' UTR (NM_028244, exon 1 of 16)	234.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	6.09948007857478	5.95324195891125	5.96771510758302	5.85999314781072	5.83612082047976	5.4529376649265	-0.473057139922508	0.137819530778651	0.496248480556973
Merged-chr1-126817847-4	chr1	126817350	126818350	+	860.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	12782.0	NM_176957	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	2.72382836989806	2.75342999720504	2.59558877941564	2.93512789712236	2.84151658291281	3.37340732947484	1.81496058688751	0.0211274278684917	0.167441758079956
Merged-chr10-94356451-2	chr10	94355951	94356951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	Lx8|LINE|L1	44502.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.90366760330482	7.68198934983223	7.53092739891338	7.87367218875468	8.09072999227127	7.51456557699371	0.197591908968754	0.449893384896398	0.808013574003465
Merged-chr13-58157664-4	chr13	58157157	58158157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048060)	promoter-TSS (NM_001048060)	8.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	6.29738134367027	6.24701508398727	6.54087178362871	6.4828051165886	6.4596287678869	6.54944985176876	0.222983364358466	0.412909112159461	0.78471875852647
Merged-chr15-73147921-4	chr15	73147434	73148434	+	866.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37013.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	6.18054196649694	5.98575794559655	5.42034483688501	5.94923094194666	5.76310030690338	5.86339905744025	-0.100288823559756	0.775520979058951	0.944682505926692
Merged-chr3-145738630-2	chr3	145738130	145739130	+	863.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-20062.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	3.21426624783332	3.31352256539812	3.24012167556524	3.2666957680614	3.37981843368447	3.06997684993552	-0.0176463115355253	0.978002475625967	0.994994154947079
Merged-chr5-21206603-2	chr5	21206103	21207103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	20336.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.44253142130479	3.49164008564147	3.30878735444888	3.44637141794799	3.05235691185768	3.26357699272321	-0.629852652019123	0.32412340623106	0.717287790132387
Merged-chr6-135235815-3	chr6	135235296	135236296	+	839.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028982, exon 13 of 13)	3' UTR (NM_028982, exon 13 of 13)	12088.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	4.00866452345845	3.72619214179669	3.93506237881315	3.22717800438123	3.13432816330358	3.37946273355378	-2.58025076831578	5.75612865096447e-05	0.00177194211168869
Merged-chr5-116012714-3	chr5	116012216	116013216	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031869)	TTS (NM_031869)	11712.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	4.62094945399128	4.53954997104328	4.41346735085437	4.26844427813018	4.1949766964893	4.25409189541396	-0.772646143900619	0.081042291820285	0.376667107025062
Merged-chr11-102425670-7	chr11	102425176	102426176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4646.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	8.29527865718767	8.16072855430395	7.8796318487609	8.07907864761287	8.41802593645673	7.8423768018934	0.0217505282606838	0.933082293565085	0.985356091252617
Merged-chr3-88176268-2	chr3	88175768	88176768	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 1 of 2)	L1Md_T|LINE|L1	1517.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	3.94394103527272	4.04768536624674	4.34135282478199	3.74542550178692	3.96805807922879	4.15700098357456	-0.442232360323487	0.396477680220007	0.773652887901204
Merged-chr6-33982881-4	chr6	33982386	33983386	+	952.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46562.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.9450224649215	4.8815295047787	5.29471878159999	5.32849298610539	5.56981751289933	5.47454463680831	0.862343369773119	0.0183357567693119	0.15277500957987
Merged-chr5-88767153-4	chr5	88766670	88767670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2157.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	6.65987399365182	6.76099199332984	6.30006100669924	6.79968838368753	7.21270274943108	6.57874881937183	0.476381239762512	0.122444780121304	0.46806566198068
Merged-chr18-69365611-2	chr18	69365111	69366111	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	19451.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.20366766708021	3.11993555075887	3.2232275184771	3.1969505970415	2.95005932374496	3.23841583156348	-0.230347423237686	0.723910042966942	0.929178878081464
Merged-chr8-70005374-3	chr8	70004875	70005875	+	829.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8991.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.45519218306939	3.77888900215397	3.83589632754948	3.70032535358701	3.41674867110851	3.90426429063245	-0.0546303007573457	0.926335125619731	0.983439764163303
Merged-chr8-126939488-2	chr8	126938988	126939988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 3 of 4)	MT2A|LTR|ERVL	6433.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	2.96414492761522	3.20313117554365	3.08534281761205	3.04940514781661	3.196165608218	3.27145725353825	0.364448867566666	0.579335537897929	0.872501938425571
Merged-chr15-55381269-2	chr15	55380769	55381769	+	765.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	73519.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	5.92302935824291	5.70961164354048	6.01671912307066	5.67980372700722	5.90547426801345	5.74416220434425	-0.171609874353792	0.585501082211361	0.875041527312205
Merged-chr4-132383551-2	chr4	132383051	132384051	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175306, intron 3 of 13)	B1F2|SINE|Alu	-29865.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	4.22461291216703	3.95670295204539	4.10389828242309	3.95754908293555	4.01938539444172	4.07820410218568	-0.239575818015183	0.624748523544252	0.892200723368576
Merged-chr17-27820199-2	chr17	27819699	27820699	+	826.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271511, exon 1 of 4)	exon (NM_001271511, exon 1 of 4)	343.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	7.83248155757312	7.85742704496992	7.95146246134468	8.00421440014673	7.78675516106666	7.80972866194053	-0.0116976353427366	0.957234057854623	0.989925627980654
Merged-chr1-180936933-4	chr1	180936433	180937433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010094, intron 2 of 3)	intron (NM_010094, intron 2 of 3)	1911.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	5.76164642845261	5.58008842805094	5.44498988301635	5.35277414623583	5.43196460337008	4.94211299329037	-0.640454751846768	0.0820286671206798	0.378854425720333
Merged-chr9-69994878-3	chr9	69994390	69995390	+	920.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	5424.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	4.06523260026823	3.83944849180195	4.50911141616384	3.83388542355352	3.99408438569355	4.42488326715735	-0.163288017654473	0.769893568146738	0.943288465925629
Merged-chr10-22142632-6	chr10	22142074	22143074	+	991.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254744, intron 1 of 1)	intron (NM_001254744, intron 1 of 1)	6696.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	5.71781160921994	6.51637501113812	5.38362045218837	5.42537591445131	5.51783563695115	5.41600098082863	-0.943679341349575	0.0232633857025617	0.178537151589998
Merged-chr7-100430524-2	chr7	100430024	100431024	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 21 of 32)	intron (NM_001017985, intron 21 of 32)	-42467.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	7.16943122554498	6.71019874699921	6.66873177014965	7.25335759046329	7.48097729632891	7.3195695979309	0.720849120560165	0.00848569984199088	0.0897975470497746
Merged-chr2-127333863-2	chr2	127333363	127334363	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2296.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	2.64415097991293	2.63456321157559	2.57686454027742	2.81570532114357	2.4645313106694	2.89869876119373	0.62143482313844	0.430987442116884	0.796623566289661
Merged-chr4-11322194-4	chr4	11321692	11322692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-61.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	6.11483043691314	6.25241112396894	6.49615503198441	6.3573683022132	6.27413068101583	6.19709165223661	-0.0117124390708433	0.967444973390274	0.992555129128888
Merged-chr11-121791642-4	chr11	121791132	121792132	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38586.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	5.2648296046736	5.3312555807912	5.85007001117987	5.0013233350844	4.97931386112502	5.20910348681109	-0.876964411614758	0.0231177389491454	0.177763683807457
Merged-chr3-121845381-2	chr3	121844881	121845881	+	638.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30079.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.7592842544208	3.92713167442023	4.00231272689465	4.1791505676696	4.08322137422186	4.33773298833383	0.886963366669898	0.074189158074655	0.35827808851282
Merged-chr10-95564227-4	chr10	95563725	95564725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027722)	promoter-TSS (NM_027722)	-79.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	6.69193479996356	6.30901040057069	6.43139797672447	6.74113987886119	5.97657202236331	6.33837816451549	-0.162011290243358	0.626268965129728	0.89285497996221
Merged-chr11-94328413-4	chr11	94327924	94328924	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027799, intron 1 of 4)	CpG	423.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	7.53165603610882	7.28283238093413	7.38042667847413	7.53326104138015	7.25386677016855	7.11615162937744	-0.127036090054147	0.612931370405237	0.886969289870611
Merged-chr17-34838229-2	chr17	34837729	34838729	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021337)	TTS (NM_021337)	1210.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	4.95969277820209	4.84237475654944	4.89556330614659	5.30590639836961	5.35313634222844	5.20943376287144	0.829024400105877	0.021519584271742	0.169596663012229
Merged-chr11-69129917-3	chr11	69129478	69130478	+	743.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 4 of 14)	intron (NM_011786, intron 4 of 14)	3601.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	2.92637054140586	3.16213955677851	3.21718106764974	3.56006870178443	3.33962561997129	3.5638698072412	1.57756113057003	0.0158174547872192	0.13787332683165
Merged-chr6-122801583-12	chr6	122800996	122801996	+	850.493042	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18688.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	5.57327603092969	5.45617285251887	5.59393589532993	5.68415077243153	5.44997694179111	5.51555412479716	0.0239574042966615	0.941558783575896	0.987024728112131
Merged-chr10-118041644-1	chr10	118041144	118042144	+	723.0	f0_balb.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-100143.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.26213875274435	5.43081999668732	5.50302083535373	3.9341468740635	3.77558500370113	4.21872206285784	-3.88142326811117	6.16711182826297e-14	1.46197447580087e-11
Merged-chr3-115740311-2	chr3	115739811	115740811	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-25256.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.22325990673733	2.19262777710919	2.44223713367518	2.27078355645863	2.15683272968504	2.45424849995726	0.0570708491013209	0.947551739103175	1
Merged-chr1-134076335-4	chr1	134075838	134076838	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2817.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.87193177142117	3.90955064032318	3.9326483867387	3.83989247256309	3.83636708773972	3.90343470890282	-0.143488856258788	0.776229118470069	0.94480820353868
Merged-chr3-30864116-2	chr3	30863616	30864616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	MTD|LTR|ERVL-MaLR	8166.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	6.66985653303834	7.1203873980525	7.17081597201346	6.60518805906018	6.90783272308309	6.96770066852814	-0.257002574516584	0.366831026865995	0.751897609642077
Merged-chr4-122850088-1	chr4	122849588	122850588	+	541.0	f1_balb.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13861.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.29519117512667	3.07958329879164	3.67945934509608	3.38672385095841	3.35144235352751	3.65213632864394	0.365767767983978	0.575068372795152	0.87094931637326
Merged-chr10-96910110-4	chr10	96909608	96910608	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125660.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	3.55045046066127	3.56049424654336	3.53945103029015	3.4593027850915	3.5835484423169	3.66203352190342	0.0642541429788419	0.908854832759008	0.979331687700228
Merged-chr7-75701972-4	chr7	75701469	75702469	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-146369.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.98309326090559	6.74233714803131	6.56324773918885	6.93376399526617	7.04142341226111	6.98283507242325	0.314569018578207	0.229908643817334	0.625620983542179
Merged-chr17-36161332-4	chr17	36160836	36161836	+	898.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	7201.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	3.18344760880237	2.94205298393648	3.40473436397056	3.38311371657654	3.51302209847164	3.06588642887895	0.613953258831339	0.375437694004898	0.758680290527481
Merged-chr17-86378795-4	chr17	86378291	86379291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-91613.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	4.55314274731292	4.44141478565871	4.67968504645356	4.23255540145254	4.11543822291811	4.25115023318537	-0.947384154977844	0.0348846118557925	0.22904432914833
Merged-chr10-51433202-4	chr10	51432726	51433726	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47386.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	4.31482356900659	4.44646857154772	4.79161726598898	4.27467438053987	4.33490066305191	4.5241620746179	-0.36967431568264	0.420112532236891	0.789482894041447
Merged-chr7-100582923-4	chr7	100582433	100583433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	CpG	197.0	NM_198831	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	7.20203758256511	7.223402396486	6.62000556510722	7.15417200802832	7.11371552548195	6.26387864387015	-0.206138614307169	0.556292200158264	0.86357390983939
Merged-chr16-90280645-4	chr16	90280108	90281108	+	733.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3878.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.74632150761061	4.40624544885419	4.49384962583951	4.5625631494338	4.78714869429891	4.42755726015728	0.125414943556713	0.776786446552732	0.944892922631445
Merged-chr9-85693349-4	chr9	85692882	85693882	+	868.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175371, intron 25 of 27)	intron (NM_175371, intron 25 of 27)	55952.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	3.2171295325295	3.49442497193551	3.59671967872038	3.51884100376662	3.29947660327926	3.45636243519525	-0.0618222808456744	0.919318550360364	0.982011519166154
Merged-chr4-130796135-4	chr4	130795636	130796636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	3599.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.54102986753199	8.58749766761655	8.63454249920366	8.67760634481809	9.05634837954465	8.37756552099193	0.213847352760682	0.387067339369908	0.767450349932227
Merged-chr5-24602216-3	chr5	24601739	24602739	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-237.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	2.64262283261279	2.65966619760415	2.79078858690913	2.6021538110804	2.32684616643105	2.74450098583836	-0.751924957578556	0.359390503864086	1
Merged-chr6-125341806-1	chr6	125341306	125342306	+	861.0	f1_c57bl6.idr	intron (NM_011324, intron 7 of 11)	L1MB7|LINE|L1	-7917.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.6386169793684	2.64319458017637	2.80104760838119	2.92736715896418	2.88516653366448	3.27016236971109	1.73863283848158	0.0203074130850175	0.163117987062278
Merged-chr2-32497142-2	chr2	32496642	32497642	+	677.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-38217.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.36147868160753	6.20522842594374	6.15023310953606	6.0598323837079	6.43343709444095	5.51117247056273	-0.284654250476635	0.430101231794604	0.796105989515053
Merged-chr10-14131249-4	chr10	14130779	14131779	+	963.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164900.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.38998704638976	4.63892457205698	4.97611168755822	5.15036673181743	4.70791359609378	4.93762835656732	0.592124206000814	0.178009391724323	0.559020435786437
Merged-chr1-80339275-2	chr1	80338775	80339775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	1415.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	5.61163848990897	5.87478350379029	5.69964328503778	6.00626108917681	6.16124255309486	6.20355140945883	0.679582621236845	0.0255125398655926	0.189370866827496
Merged-chr19-10694076-4	chr19	10693588	10694588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	5353.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	7.55946885681301	7.63437660591016	7.25743998038372	7.4660154069419	7.61984423374462	7.54390819843658	0.0641093977641969	0.788512073544291	0.94895503373255
Merged-chr1-136124890-2	chr1	136124390	136125390	+	748.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6293.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	4.46761985817429	4.29684323958727	4.71191146881	4.80573588025791	4.73295690449979	4.57940514286505	0.537298020460556	0.212213381534827	0.604612211832013
Merged-chr2-132029245-4	chr2	132028729	132029729	+	981.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	CpG	759.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	6.6457388124383	7.09603762962649	6.80225783633201	6.37195520543392	6.71812587501907	6.7861186492119	-0.358469757578006	0.214040759033881	0.607279519630221
Merged-chr4-59439215-2	chr4	59438715	59439715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163288)	promoter-TSS (NM_001163288)	-582.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.01708939625465	7.43219027938895	6.80198528711555	5.98287729630773	6.43287804955512	6.51304366014409	-1.23825064052738	8.52052031707127e-05	0.00248066988993305
Merged-chr5-66136196-3	chr5	66135774	66136774	+	911.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	14704.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.59324476765831	4.77584270894836	4.53934520747926	4.70972706001869	4.62497568585768	4.60674511973319	0.00392348397416634	0.992408534683263	0.998523796268552
Merged-chr1-138153310-4	chr1	138152807	138153807	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	21819.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.08548080141868	6.08962303386629	5.99586794516969	6.13953403639198	6.11096726734404	5.69269822044972	-0.0872758905174999	0.777160998311384	0.945018349303776
Merged-chr17-74294205-2	chr17	74293705	74294705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 1 of 8)	intron (NM_133771, intron 1 of 8)	658.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	5.21035461592617	5.01799702315587	4.99822483673663	5.40358972222805	4.72870530800346	5.09904172975731	0.0441386150723185	0.914445678567125	0.980912729144991
Merged-chr15-100076811-2	chr15	100076311	100077311	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	38147.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.13051750193105	3.96719123640797	3.86969321619705	4.20515159818017	3.91373061486311	3.94067932897749	0.0813085566358915	0.872953767385992	0.970349288189719
Merged-chr11-50245829-2	chr11	50245329	50246329	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-7297.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	5.23511450754477	5.003516875343	5.62999443625964	5.44277334486199	5.33861898376762	5.53566318677008	0.266055660827056	0.477258441423001	0.823211450952012
Merged-chr3-21808771-4	chr3	21808259	21809259	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267893.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.45800437137941	5.30760153850288	4.90372450538045	4.89185095380729	4.97000107858872	5.11715132699818	-0.55102154012084	0.156289314133695	0.526690747658519
Merged-chr18-53267788-4	chr18	53267278	53268278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	MMAR1|DNA|TcMar-Mariner	22116.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.40629949235934	8.50208164289863	8.10314499083914	8.33621194812805	8.66487418101641	7.89941099379158	-0.00677569664405763	0.980295936516858	0.995500659055379
Merged-chr9-40324427-4	chr9	40323941	40324941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3118.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	8.26606999599383	8.22495683107665	7.91046434454659	7.97084076616776	8.13570264260106	7.39071117957056	-0.376541224760802	0.176564962541681	0.556963220799667
Merged-chr11-70239981-4	chr11	70239473	70240473	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173742)	promoter-TSS (NM_173742)	-121.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	8.13675130683554	8.45501839202059	7.75183861941283	8.13024021968178	8.19275511736404	7.86979500516306	-0.111594803799227	0.675366118183631	0.912152821313949
Merged-chr10-37234017-2	chr10	37233517	37234517	+	573.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95091.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.22218580334524	5.03807564011965	5.52993835997117	5.51683175379631	5.34070581960861	5.56514159632283	0.405318219322051	0.26197576155099	0.65982017638208
Merged-chr11-117993688-4	chr11	117993187	117994187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	6830.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	4.91941500803612	4.99285865196242	5.04376578453145	4.78795031762917	4.65003753780462	5.10744770971257	-0.300162819136341	0.450589910941756	0.808443910792592
Merged-chr14-120359385-2	chr14	120358885	120359885	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	B4A|SINE|B4	52933.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.71505159945984	2.8276600440938	2.93831255279018	2.92283023192472	2.60046648002656	2.83167255597686	-0.195010837196244	0.792349367466689	0.949929758256028
Merged-chr4-122872128-4	chr4	122871643	122872643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 2 of 12)	intron (NM_007598, intron 2 of 12)	13933.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	6.22977146970246	6.68618077651139	6.33812901322709	6.55889957865388	6.59827962543806	6.35845971515629	0.121974928195428	0.676203069890512	0.912421384593547
Merged-chr6-39381269-3	chr6	39380804	39381804	+	803.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011226)	promoter-TSS (NM_011226)	-49.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	5.44844672069035	5.74983941479817	5.42388825898077	5.62518307352779	5.96281374225079	5.82139605898179	0.470924222561754	0.160161676304063	0.53274966067993
Merged-chr1-91057745-4	chr1	91057192	91058192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	4248.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.69086133198577	7.64041079538395	7.31497471425431	7.39790511614503	7.75657158348781	7.46122171946578	-0.016848947387944	0.946853236363068	0.988007649185823
Merged-chr7-17091457-3	chr7	17090841	17091841	+	861.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310628, intron 2 of 5)	intron (NM_001310628, intron 2 of 5)	17301.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	2.35852940451369	2.1500611998303	2.20329499597062	2.34606930516228	2.21670941693519	2.64900693781859	1.14260437741136	0.204468374651385	1
Merged-chr19-17348068-4	chr19	17347582	17348582	+	918.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-8577.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.63465942518791	4.17071095487331	4.49176864820201	4.4164640647714	4.2441059314069	4.29820243180252	-0.325494420010992	0.485253993004551	0.827394620754206
Merged-chr10-94962119-2	chr10	94961619	94962619	+	638.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17541.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.2176519439071	3.10681090565524	3.23356616777674	3.23198091376776	2.9396582151889	2.8784507805325	-0.697132052765151	0.309942801099018	0.705485299098563
Merged-chr7-99052606-4	chr7	99052100	99053100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	L2a|LINE|L2	88544.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.6696747250634	7.25405570487538	7.04755495123372	7.22420653822477	7.28508137314834	6.99304017892587	-0.267466658754603	0.335962818527897	0.726090328603253
Merged-chr4-122847065-2	chr4	122846553	122847553	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 4 of 8)	B2_Mm1a|SINE|B2	10826.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.5852241838899	4.86760260096582	4.96887415981368	4.20272452646405	4.46653496323132	4.68105186359576	-0.848010170704733	0.0582115162299427	0.311770329715569
Merged-chr4-149617114-6	chr4	149616583	149617583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290989, intron 2 of 17)	intron (NM_001290989, intron 2 of 17)	30615.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	6.69675187513909	7.0072559213935	6.75217633393267	7.00094427570084	7.24921697950111	6.572802592514	0.239666368292655	0.418213391061751	0.788549735859192
Merged-chr8-104632973-2	chr8	104632473	104633473	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1652.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	2.63082541669524	2.41043239539155	2.66744477280442	2.75415683283101	2.76184928618255	2.97960299921439	1.44157154711132	0.0667717053262654	0.337726585422643
Merged-chr4-117183259-2	chr4	117182759	117183759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-635.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.84667526802828	7.00171344066635	6.67303922630296	6.6952483192326	6.66883914861657	6.4247632997771	-0.384457975923794	0.151529651255819	0.518952882025607
Merged-chr10-60257586-4	chr10	60257081	60258081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-20047.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.63051721066939	7.18945334215669	7.02050421621251	7.60528004360427	7.60430342339306	7.3574536481641	0.316495181987787	0.246055862914707	0.643182480464067
Merged-chr16-91397146-2	chr16	91396646	91397646	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-9089.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.45102849885216	6.34841084439487	6.7750442593817	6.49905860504901	6.5480171228239	6.73093135236606	0.10430488197249	0.710612019512372	0.924389977637543
Merged-chr14-56575570-4	chr14	56575065	56576065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145978)	promoter-TSS (NM_001145978)	-54.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	6.10024902679941	6.52856595257812	6.04835483221129	6.50378332495273	6.74999913856637	6.46652549752843	0.536813983679361	0.0770879551813907	0.365994676965629
Merged-chr11-58954590-4	chr11	58954079	58955079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	-67.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	7.25491234361547	8.04363423790405	7.5632564299896	7.67713369668332	8.12337291078231	7.44263853637205	0.170848535653788	0.5867264706166	0.875655897836385
Merged-chr8-46597518-3	chr8	46597015	46598015	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	19712.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	4.57892135910028	4.92120365724611	5.15068227563745	4.82266678068296	4.77964135116248	5.05621832739613	-0.0239015693450188	0.954391496328853	0.989574212185713
Merged-chr12-87266286-4	chr12	87265762	87266762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	24.0	NM_001142580	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	7.16529976070791	7.41632533857443	7.33779173404103	7.37133904706407	7.59937797990323	7.01980961509763	0.0790213051754107	0.767006244314095	0.942573703853445
Merged-chr7-132358984-4	chr7	132358485	132359485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41757.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	4.08141406549712	4.18790379879928	4.40795600203226	4.20498522015343	4.11920924052317	3.80815696599471	-0.459147324232036	0.365428973210017	0.750595260500101
Merged-chr9-37242996-3	chr9	37242500	37243500	+	841.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	12738.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	2.55230671439795	2.69216936820347	2.70585243769322	2.71263679717106	2.41226480747346	2.52477028245	-0.550143628845841	0.487648663402291	1
Merged-chr15-83170206-2	chr15	83169706	83170706	+	988.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2002.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	3.00208775866296	2.92428304777494	2.92392531485383	3.15720300196502	2.97028074921021	3.058269788758	0.510564181736729	0.447119182982635	0.806270036091875
Merged-chr8-90914163-1	chr8	90913663	90914663	+	620.0	f0_balb.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-18086.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.89867333356333	3.80118594042809	3.75955990082683	3.83961118612649	3.56090829769647	3.82960377597762	-0.264674014687035	0.622762651788623	0.891249034616027
Merged-chr6-148444343-4	chr6	148443860	148444860	+	994.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-8.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.77703153747598	4.55949599748558	4.78255975275704	4.84809527600279	4.84232578817898	4.47218523646798	0.0851475531521979	0.839692437854112	0.962784121274377
Merged-chr12-82223635-4	chr12	82223134	82224134	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	53618.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.92737931077348	5.81315809965821	6.20064815332462	6.1985612277547	6.06149945367012	5.85710191960491	0.126514738998533	0.68422359147448	0.915825160524325
Merged-chr4-117918924-4	chr4	117918432	117919432	+	668.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3933.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	2.97390512015012	3.0160862796909	3.14055580998893	3.076643247074	2.95485212521949	3.15544641820443	0.0831255625385541	0.900023662131762	0.976728292075907
Merged-chr2-60818305-3	chr2	60817810	60818810	+	776.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63128.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.13609365035214	6.27537846747423	6.11846091846976	6.26121206104299	6.26998544618875	6.08976999428279	0.0561938393316559	0.842129010215033	0.963002495523594
Merged-chr9-50774117-4	chr9	50773623	50774623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	5.30060490730303	5.14968025299648	5.06714563870682	5.35302088725252	5.33031000065668	5.36387270149387	0.331937881517586	0.340486202980106	0.730173453949955
Merged-chr14-40923566-1	chr14	40923066	40924066	+	619.0	f0_balb.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	24643.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.36994054379884	3.9081101601587	4.44007941746105	4.46210361329583	4.26597233044677	4.69746664218974	0.582382843864224	0.241339048652389	0.638385260200477
Merged-chr1-92981274-3	chr1	92980780	92981780	+	931.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	2377.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	3.14136761436428	3.41963557520582	3.8481222639355	3.33083627280019	3.0076199745697	3.59148252089578	-0.623288620475239	0.375985905546438	0.758951282467405
Merged-chr15-57919331-3	chr15	57918821	57919821	+	826.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 2 of 19)	RMER1C|Other|Other	7122.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	4.26975439201378	4.57849975207998	4.68817140084076	4.79576103818646	4.64137247462797	4.7537638484204	0.508723771941242	0.235980592995336	0.632279217060081
Merged-chr14-20930151-1	chr14	20929651	20930651	+	647.0	f0_balb.idr	intron (NM_009502, intron 1 of 20)	intron (NM_009502, intron 1 of 20)	753.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	3.6835683786452	3.85226650855403	3.86910292916169	3.81435954385122	3.65816401199985	3.88924371934319	-0.0588036573896549	0.911678262977808	0.980159546174906
Merged-chr12-41237664-2	chr12	41237164	41238164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	213574.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	5.37569736835432	5.65548489725342	5.4450159330451	5.31166065503504	5.40328206402223	5.32355073678013	-0.29452785085876	0.386027267047757	0.7668275851124
Merged-chr3-65950431-4	chr3	65949928	65950928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	7821.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.19244278151279	6.19205559877289	6.13167342594772	6.26110500081581	6.36111248612281	6.19229801454858	0.175380001680836	0.526160258411586	0.849331441282684
Merged-chr4-59549447-4	chr4	59548943	59549943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178164)	promoter-TSS (NM_178164)	-79.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	8.17591181917305	8.4134663754326	8.24941245555648	8.1363342795196	8.16358379502466	8.28041116667433	-0.129889852955933	0.540180872240952	0.85632302227606
Merged-chr2-165885674-4	chr2	165885168	165886168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-830.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.51258859354543	7.56261112907432	7.70907279916051	7.72479521762713	7.80683782842865	7.7826654828804	0.259870016417905	0.235850616507788	0.632196962128085
Merged-chr1-86477854-2	chr1	86477354	86478354	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48703.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	2.67448961155239	2.569766016015	2.7223665899719	2.39303234617784	2.54456551003109	2.4146583592546	-1.17982293196387	0.148690948384653	1
Merged-chr2-30206540-2	chr2	30206040	30207040	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	-693.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	5.31366165330019	5.17631877978277	4.98561302703608	4.96537199402131	4.98120233755282	4.90006990783831	-0.468817363539027	0.208611437775647	0.599611057875436
Merged-chr1-144248429-4	chr1	144247941	144248941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 2 of 4)	intron (NM_015811, intron 2 of 4)	663.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.24464810940901	7.57723311341571	7.32239795043113	7.21458996831521	7.58022869453551	6.8912878703535	-0.175730037782088	0.538576827181688	0.855292400872851
Merged-chr4-45530086-4	chr4	45529696	45530696	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033306, exon 1 of 6)	exon (NM_001033306, exon 1 of 6)	632.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	7.39538742079141	7.20732313923113	7.05649932937804	7.41981601179485	6.8421122419131	6.82302661892358	-0.252302318204182	0.384008351633493	0.765220972380489
Merged-chr18-89181803-4	chr18	89181294	89182294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15633.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	4.15524223921988	3.8721664300255	3.96976846912794	3.93102319607959	4.08195979130011	4.43278391316818	0.433564711595816	0.399847443299105	0.776248940201881
Merged-chr11-8621870-4	chr11	8621390	8622390	+	863.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42645.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.90486277312507	6.04478830483199	5.59715740383609	5.62542495430541	5.83211714811956	5.99246512073778	-0.095346928998869	0.771584154701791	0.943614978016208
Merged-chr8-25535585-4	chr8	25535084	25536084	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	16825.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	2.64071506977616	2.50033010324996	2.67683366424996	2.76155687446377	2.8148555103942	2.87250672033331	1.1559977931996	0.123398001456233	0.470068255512991
Merged-chr19-56390024-3	chr19	56389534	56390534	+	920.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286552)	promoter-TSS (NM_001286552)	4.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	4.97255301548223	4.89648575353025	4.68776392109267	4.97110537800061	4.85855913223875	4.48658948447229	-0.148356506907263	0.72376029223354	0.929128417950564
Merged-chr11-116871809-1	chr11	116871309	116872309	+	561.0	f1_balb.idr	intron (NM_178620, intron 11 of 12)	intron (NM_178620, intron 11 of 12)	17809.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	2.69391494051636	2.48564597191631	2.86564780409253	2.62136572638711	2.53821613035166	2.7009924099025	-0.370618042781194	0.633711071080864	1
Merged-chr6-13601789-4	chr6	13601273	13602273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	6325.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	6.33205479239711	6.10873576433414	6.20472761547718	6.02578683456006	6.09275485517513	5.87781085146326	-0.356985068134144	0.221024361208298	0.61561513090473
Merged-chr16-49791172-4	chr16	49790670	49791670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64484.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.87582224946039	4.66282819302298	4.83815590264292	4.76965024974805	4.53045876248325	4.79220579139664	-0.229824264852419	0.572989317062789	0.869934493236159
Merged-chr8-72312414-1	chr8	72311914	72312914	+	620.0	f1_c57bl6.idr	Intergenic	Intergenic	-6648.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	2.18118058400613	2.17835343641075	2.37706583830627	1.99182399007448	2.04463555818716	2.13061366813886	-1.45654644471323	0.118078680385409	1
Merged-chr17-53569061-2	chr17	53568561	53569561	+	787.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2090.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	4.49255782517775	4.76821720905098	4.48567322105327	5.03862877146868	5.25982809285192	5.07058229095265	1.18965359720776	0.00330036657802663	0.0451895511312226
Merged-chr12-85287199-4	chr12	85286734	85287734	+	657.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1357.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	5.12879232990341	4.99317534220093	4.5605756593066	4.74487816986847	4.4641822381858	4.58493644095963	-0.752555065291963	0.0822172455018524	0.379123019025808
Merged-chr4-95163395-4	chr4	95162865	95163865	+	952.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111143.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.91374899510834	5.70305877050385	5.97786290604167	6.30008913561394	6.19225298408095	6.40242513998096	0.7403176511599	0.0119112272789739	0.113659334796888
Merged-chr10-99430879-4	chr10	99430373	99431373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	167642.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.43135484979603	4.50784334628943	4.27666094411835	3.9995799767086	3.89540070590554	3.95439413017478	-1.32673703886122	0.00559799257948844	0.066371867562564
Merged-chr5-41844366-4	chr5	41843872	41844872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-57.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	6.77742584382486	6.65520676595402	6.40551965504713	6.95111010213468	6.75525757028685	6.48514817381972	0.190279319453155	0.502895717662204	0.836691193058519
Merged-chr10-81086811-4	chr10	81086301	81087301	+	841.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	12071.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	3.95087379173935	3.78370812441588	3.76234750652285	3.66864567338313	3.78102750209954	4.20382705648321	0.182040564583167	0.740756298200007	0.934667811508694
Merged-chr16-31949225-3	chr16	31948758	31949758	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027897)	promoter-TSS (NR_027897)	712.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	7.43893259098872	7.60359727568327	7.20068020522028	7.35594165136871	7.46450583501823	7.04658263031779	-0.17989588797211	0.489496598277346	0.829739482756292
Merged-chr3-135628577-4	chr3	135628088	135629088	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62959.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.01136591837079	5.98844982136548	6.1181810610283	6.09761937516535	6.1971641375335	6.44577257082774	0.358579826357381	0.218314690203025	0.612458824761069
Merged-chr2-163017219-4	chr2	163016704	163017704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172150)	promoter-TSS (NM_172150)	-149.0	NM_172150	245866.0	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	7.2960779228705	7.727827435015	7.41074003329333	7.33379937862679	7.42604344004604	7.25354507872775	-0.224211884896557	0.370062362234169	0.754543091886122
Merged-chr12-98268648-4	chr12	98268144	98269144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	9.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.42513349660319	7.49313537114628	7.33126889085989	7.59825801194063	8.05550315969457	7.64670300310974	0.538044579900446	0.0310038550240694	0.213182359211978
Merged-chr16-30773005-4	chr16	30772482	30773482	+	894.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	173259.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.04636120595698	4.12305106240403	4.34435320496137	3.98658387318203	4.02474230181837	4.40907604021062	-0.0743974666659668	0.881275153709159	0.972635980891511
Merged-chr4-129600665-4	chr4	129600151	129601151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029748)	promoter-TSS (NM_029748)	-3.0	NM_018799	54709.0	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	6.09271822073289	6.54046787007283	6.36850397347869	6.46369046220051	6.25681260540468	6.39056119984655	0.0347738277194136	0.905566181023384	0.978423502708588
Merged-chr7-64400945-4	chr7	64400441	64401441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	8319.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	4.84993964161582	4.8798164530998	4.67046891488138	4.43112557012445	4.33604984049796	4.39675916584223	-1.05326583840511	0.0121143074572969	0.115069325902598
Merged-chr12-70476958-4	chr12	70476490	70477490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23836.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.41222991253444	7.50979075435158	7.68471696560523	7.6780333966315	7.86186509263758	7.66075013384563	0.299183737519107	0.193301333711191	0.58042547704774
Merged-chr12-111713179-4	chr12	111712664	111713664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027404)	promoter-TSS (NM_027404)	92.0	NM_027404	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	6.98221496238193	6.61469271280634	6.73877186515277	6.72825138957783	6.18782556767725	6.18531052731604	-0.625003700715496	0.0428703248329055	0.259545733324536
Merged-chr3-41741776-3	chr3	41741275	41742275	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	739.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	6.27786091889249	6.13839651396455	6.11454573480702	6.32874920637853	6.19983884328385	6.03876767140373	0.0302668919991975	0.915870057772099	0.981201223155309
Merged-chr4-108369814-4	chr4	108369308	108370308	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 2 of 2)	B3|SINE|B2	13847.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	6.38922560308163	6.30856338821973	6.29760283145949	6.48708652433877	6.65500130798689	6.33767586511599	0.28641191098713	0.296119442847709	0.692837106451674
Merged-chr13-99192798-1	chr13	99192298	99193298	+	708.0	f0_balb.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	7975.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	5.10901765819453	4.87942993004017	4.76350081562269	4.96810726938755	4.68382513101552	4.43102588354911	-0.474265482426748	0.269721436021534	0.66686579973798
Merged-chr19-60659116-4	chr19	60658624	60659624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-78101.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	4.05833229944575	4.29863721424091	3.9929192950623	4.5014056422719	4.33476923933281	4.35400071927284	0.716383826006268	0.130052282608099	0.482195010397444
Merged-chr9-100463983-2	chr9	100463483	100464483	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033543, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	22490.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.09682426278307	2.14726228890747	2.26646835170115	2.32200804219955	2.11170981541037	2.46839004955803	0.932965566217232	0.295056784351385	1
Merged-chr8-82400092-2	chr8	82399592	82400592	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	2494.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.10893890625772	6.32777797615365	6.29616552591587	6.75888805035345	7.09888881568968	6.45566126120921	0.905241582821019	0.00255918414132959	0.0373455969890832
Merged-chr3-104639661-3	chr3	104639163	104640163	+	819.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	999.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	3.0633354795735	3.29354187939406	3.19915404117379	3.17409656322536	3.12973992486529	2.90160780695638	-0.478461054457105	0.479762082712764	0.824391932626821
Merged-chr15-74721043-4	chr15	74720505	74721505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198607)	promoter-TSS (NM_198607)	-229.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	4.14587208227338	4.24174928107905	4.13261486076094	4.19323996152204	4.21793890528427	4.05484377458568	-0.0390981752878474	0.933642248207136	0.985581479569838
Merged-chr13-110563050-4	chr13	110562554	110563554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168010.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.9507331943398	2.81316264931315	2.86615941303455	2.9253524028837	2.67508648049533	2.93921442380404	-0.155533803152741	0.828443728016679	0.959777585152346
Merged-chr19-41896211-4	chr19	41895707	41896707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199447)	promoter-TSS (NM_199447)	-54.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	6.79651799200181	6.77881978620423	6.228803290377	6.69163851497765	7.16302861659571	6.59274027609589	0.333090633438087	0.297113400436283	0.693762082882061
Merged-chr7-75641959-4	chr7	75641454	75642454	+	888.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186420.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.638403659316	6.94141333192806	5.8987848554715	5.18739185755379	4.86262250273368	5.29606275701397	-2.63967549473919	1.50647596379247e-11	2.356219022467e-09
Merged-chr2-131233992-4	chr2	131233492	131234492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206385)	promoter-TSS (NM_001206385)	-71.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	6.86749094621977	6.82205731550585	6.61135789483454	6.48214846804684	6.95550022424861	6.63634070520513	-0.0947394641324485	0.736087022616411	0.933046642264646
Merged-chr14-74889021-2	chr14	74888521	74889521	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	58856.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.16408082256941	2.90458098421203	3.09278787689813	3.20520666240628	2.85344193662438	3.16522467723215	0.0989717298870605	0.886280863044197	0.973745715955602
Merged-chr10-37235720-3	chr10	37235216	37236216	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96790.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.6109115394655	6.78816546296371	6.84009543421735	6.70426469205758	6.81157815085183	7.03305759612611	0.162623524995039	0.534473139636423	0.853068627162717
Merged-chr5-5301202-4	chr5	5300711	5301711	+	871.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-35143.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.11440949209233	2.20594688277473	2.11296237439662	2.55223075174352	2.31753297797958	2.52698253773333	2.28839122740049	0.0150181303339717	1
Merged-chr1-105780056-2	chr1	105779556	105780556	+	593.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-667.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.16657903061444	3.96930970645141	4.54140171015482	4.38261026056781	4.26884672987609	4.32302148377409	0.239845557139652	0.622537209909944	0.891197759894683
Merged-chr5-115561207-2	chr5	115560706	115561706	+	812.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007475, exon 4 of 7)	exon (NM_007475, exon 4 of 7)	1739.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.46242242748598	3.18274583126171	3.32915994581353	3.35226905039007	3.27440700685545	3.56124054204362	0.251042202483277	0.684391950890705	0.915853993305035
Merged-chr9-78177056-4	chr9	78176593	78177593	+	896.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040401, exon 3 of 4)	non-coding (NR_040401, exon 3 of 4)	1179.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	6.85886199850232	7.18295185765515	6.95738426444109	6.83674544903243	7.2501967025316	6.46757703937813	-0.155564149068975	0.613776868564488	0.887300906025089
Merged-chr16-22267401-2	chr16	22266901	22267901	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_001330555	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	2.2109867092009	2.17880001619381	2.38515803094701	2.35830455882862	2.11087571839422	2.1282521316345	-0.373733838907296	0.674758369294903	1
Merged-chr2-153779048-6	chr2	153778509	153779509	+	891.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	3.40720821018135	3.56001577070981	3.36574291054059	3.80815948290299	3.71125486971246	3.49876527256719	0.821808892055316	0.158601279145481	0.530413080824572
Merged-chr9-47627035-4	chr9	47626526	47627526	+	857.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96674.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.11030205195244	6.71954410939794	6.64131189321026	7.05243023620609	7.04737389784286	6.78353707274275	0.191093469509062	0.490327049845096	0.830042606694236
Merged-chr4-123050943-4	chr4	123050457	123051457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 8 of 9)	intron (NR_151450, intron 8 of 9)	34364.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	3.36747763178297	3.30604738829315	3.31291215554393	3.24335769407193	3.29814554807766	3.0859874732044	-0.451353569290788	0.472522675981473	0.820550293768681
Merged-chr12-100776663-1	chr12	100776163	100777163	+	563.0	f0_c57.idr	Intergenic	Intergenic	-2394.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	5.49301515145483	5.47121675126171	6.06047546442092	5.09140185928326	5.50719094086812	5.40036090854871	-0.652070204318719	0.0884269837992845	0.39466998165375
Merged-chr4-116788202-4	chr4	116787681	116788681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	19378.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	5.25091190603506	5.1414197958093	5.53103965722301	5.07959923808344	5.32650947840719	5.30887715599623	-0.125175731915748	0.73092596020417	0.93121032683938
Merged-chr17-35088677-2	chr17	35088187	35089187	+	743.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	-604.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	6.02727559154512	5.95456034107414	5.89821367605099	6.14937140719698	6.15839301213773	5.8845904505125	0.198648385041669	0.501935754214196	0.836120803120154
Merged-chr2-145719718-2	chr2	145719218	145720218	+	936.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	L1_Mur3|LINE|L1	18523.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.32577749543348	3.29439455490833	3.40878320180436	3.36222881363369	3.2245628213771	3.31324583049283	-0.168589763517691	0.780128383665186	0.945949149660645
Merged-chr12-82265737-7	chr12	82265233	82266233	+	853.005981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-45616.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.03774467984889	5.26153866619517	5.23368155523756	5.22815297947658	5.22477751819089	5.52949492559511	0.294013911549778	0.414310596874824	0.785767012621893
Merged-chr11-5735108-4	chr11	5734578	5735578	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6098.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	5.12813339766512	5.00604489999831	5.26899183487541	6.22350528315906	6.28181004310651	5.56146040847409	1.75958140782688	1.32955253814779e-06	6.97097716409588e-05
Merged-chr10-117867486-4	chr10	117866974	117867974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21500.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.02937833422146	6.51806251039141	6.36363279605246	6.81703714014917	6.83580818326504	6.44422973781757	0.060603352260248	0.847049711025525	0.96415075979756
Merged-chr11-117864905-4	chr11	117864430	117865430	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001085535, exon 4 of 4)	3' UTR (NM_001085535, exon 4 of 4)	4178.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	3.34306500883876	3.03921834414161	3.28372985841121	3.02905127963681	3.03459012295392	3.24420669706716	-0.540840217314507	0.412406289856943	0.784461927725322
Merged-chr19-29641222-4	chr19	29640713	29641713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	7202.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	6.0294749764665	6.23680782322486	6.18253892646605	6.44153734024813	6.56493506109546	5.98996760148879	0.36134566858314	0.240480410438391	0.637542024844123
Merged-chr16-95825922-3	chr16	95825435	95826435	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72778.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.49157364333955	3.47137102720255	3.08703962084725	3.31794227565307	3.32625754816905	3.51432135441135	0.0603959674699372	0.925180254078137	0.983147283355899
Merged-chr15-38666650-3	chr15	38666153	38667153	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	4749.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.41893111351103	3.25343001842558	3.33907740466789	3.22518731960865	3.16086402269683	3.40990339948762	-0.307977519974244	0.618319849217131	0.889277642617907
Merged-chr5-92318789-4	chr5	92318281	92319281	+	947.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33C|LTR|ERVL	-8757.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	4.54223858902169	4.3290498398752	4.85555001262484	4.74513052451621	4.90422155009429	4.57380779846983	0.413259484531486	0.348798154414584	0.736694000216487
Merged-chr5-65108353-4	chr5	65107869	65108869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	intron (NM_001347355, intron 1 of 10)	801.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	7.55433177610189	7.61187623500126	7.65397113936968	7.74996904535925	7.71064241023462	7.60837965323317	0.128027360614408	0.55707716155238	0.864042284907831
Merged-chr9-95614154-4	chr9	95613622	95614622	+	828.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23506.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	5.20580257049224	5.18938700626432	5.42892376349966	5.14761765137779	4.88329574913187	5.22521245951969	-0.390854877628918	0.290477985641538	0.68827326449472
Merged-chr10-128491067-2	chr10	128490567	128491567	+	732.833313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001114096)	TTS (NM_001114096)	1942.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	3.84217557310673	3.61063383867173	4.22324870360856	3.86166257192996	3.79572609190298	4.16482677020032	0.110700766000944	0.84354294104685	0.963519719942157
Merged-chr5-123252050-3	chr5	123251551	123252551	+	922.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23861.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	3.0018183114947	3.19446900618899	3.19329440372401	3.03016017386841	2.71594640838798	3.15279841888984	-0.723424862210256	0.312753520017338	0.707413942140844
Merged-chr2-153342781-4	chr2	153342289	153343289	+	831.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3021.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	3.6255332057189	3.57875011639225	3.48580167120447	3.32527481767585	3.4752820747282	3.44551099090486	-0.555001970423959	0.339543015877394	0.729313720985741
Merged-chr1-165701056-4	chr1	165700550	165701550	+	900.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7044.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.62553712611828	5.35219610216599	5.57310040104445	5.65766502540868	5.55791753552427	5.57987256427215	0.149732501918148	0.64767074409012	0.901510214793849
Merged-chr5-134175905-2	chr5	134175405	134176405	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033572, intron 1 of 10)	intron (NM_033572, intron 1 of 10)	862.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	5.99662081539755	5.80326798468054	6.16782132091676	6.14308954578916	5.91968234332833	5.58977958398257	-0.134942524360834	0.682998572343387	0.91523316791368
Merged-chr2-102902092-4	chr2	102901592	102902592	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	-427.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.72778173207175	5.28471513269757	5.50336301617175	5.65558354111707	5.43778285956017	5.91946615956042	0.290097338977733	0.417630103443112	0.788200091800365
Merged-chr2-164492938-4	chr2	164492429	164493429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026797, exon 4 of 4)	3' UTR (NM_026797, exon 4 of 4)	-4596.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	7.6073430923246	7.62183090441544	7.55370662568719	7.19112241856085	7.32077327494174	6.93189703800778	-0.629113269359124	0.0094709665530547	0.0967776231053144
Merged-chr11-83590970-2	chr11	83590470	83591470	+	775.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009139, intron 1 of 3)	L1MB3|LINE|L1	2117.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	5.98935082934669	6.07020623306319	5.76586673267246	5.71218829559291	5.54233732217043	5.63761708287074	-0.591567147028391	0.058622231325135	0.313143649232961
Merged-chr9-40575234-4	chr9	40574737	40575737	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43854.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.3823658909496	3.33285201558741	3.42822209483046	4.14455332199682	4.09198896828591	4.03911222895456	2.52118210963437	1.23402866980074e-05	0.000480042344818981
Merged-chr3-19215228-2	chr3	19214728	19215728	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26933.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	5.41997035342263	6.23508871350635	5.70590131005625	5.89955080867584	6.10724502636822	5.92286336400114	0.244282731243091	0.505063010507182	0.837928144581384
Merged-chr17-70999356-4	chr17	70998843	70999843	+	892.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	-1331.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	4.61684987642398	4.36248471828958	4.30747285016338	4.42950176013097	4.68249233240046	4.55189481939556	0.302615213843071	0.494121240114843	0.831815174927983
Merged-chr10-91170756-4	chr10	91170259	91171259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283048)	promoter-TSS (NM_001283048)	-209.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	7.37519582486759	7.24852146521312	6.99542960455909	7.27639993622028	7.13034479292902	7.49553973674994	0.117218829843719	0.648852435476813	0.901963404198945
Merged-chr14-77896148-3	chr14	77895679	77896679	+	896.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8060.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	3.68953280757478	3.4393153334034	3.4313162096511	3.84395335402584	3.60270517054182	3.87644372069836	0.835254897540687	0.1461461030208	0.509939402866387
Merged-chr16-4906205-2	chr16	4905705	4906705	+	782.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	20105.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.97226591094929	4.82323835370319	4.91086600614684	4.79371333452839	5.01066128253648	5.04577449877237	0.112207354437257	0.769382082455998	0.94311644544783
Merged-chr13-14062714-4	chr13	14062216	14063216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331178, intron 1 of 4)	intron (NM_001331178, intron 1 of 4)	772.0	NM_001331119	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	7.09679423909299	7.43178819865637	7.40894422837374	7.35245080063128	7.60974631677807	7.51663412016888	0.265335047399883	0.281189269735144	0.679361113708532
Merged-chr19-12015771-2	chr19	12015271	12016271	+	912.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20969.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	4.43561243794057	4.41392787510896	4.7125374333797	4.7463243815983	4.76642569434662	4.8865793855692	0.66992988765569	0.105806536950326	0.434226896501244
Merged-chr4-102802100-2	chr4	102801600	102802600	+	849.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	41965.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.32495546663759	4.01553145875855	3.79904117416395	3.90801931332684	3.77804981795071	4.07394307658676	-0.459596626848121	0.389253124316737	0.769015431167891
Merged-chr2-75779076-2	chr2	75778665	75779665	+	670.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-53012.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	3.04030259876385	2.87114726743873	3.05347409781086	3.08863661339632	2.97784231585339	3.06702821677359	0.25353440156986	0.704788564594541	0.92252586768366
Merged-chr19-3389929-2	chr19	3389429	3390429	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286558, intron 1 of 8)	ID|SINE|ID	551.0	NM_001286558	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	5.15846403186162	5.0916356386981	5.33724182806545	5.15646835717772	4.85180118377438	5.08512647895238	-0.340290665359046	0.361687239166025	0.747458707295016
Merged-chr2-52957191-2	chr2	52956691	52957691	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B1_Mm|SINE|Alu	99323.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.86577751175671	3.67653706298265	3.6950156533425	3.89463572994144	3.5959846747451	3.86824834174088	0.117358734226775	0.829279837294765	0.960024094417547
Merged-chr14-103421462-4	chr14	103420971	103421971	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74671.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.17127362937328	5.11315149791371	4.71833483398721	4.9851711012155	5.03741421328324	4.98424280186999	-0.0539474482722026	0.889881300092171	0.974313026039223
Merged-chr14-14346245-4	chr14	14345753	14346753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-242.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	8.08726060570842	7.65739045196978	7.50155231640966	8.15684659601022	7.99881737861341	7.59989507098857	0.23503397785874	0.399114003298023	0.775688105708038
Merged-chr16-17201197-7	chr16	17200672	17201672	+	990.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	CpG	320.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	8.53551517021696	9.02506369416347	8.43503193973832	8.48720350603752	8.36346527169346	8.32326427415905	-0.421667927289569	0.0871668617948391	0.391397131089794
Merged-chr1-86344521-4	chr1	86344022	86345022	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010880)	TTS (NM_010880)	6763.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	4.58536624784865	4.5824829914438	4.65327517605829	4.67625647543182	4.58926160697318	4.67981461092419	0.0987035824695903	0.808237610931819	0.954666784752209
Merged-chr5-105293808-3	chr5	105293310	105294310	+	893.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-111.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	6.58445598240142	6.67533039118837	6.58935916865665	7.36444529834494	7.10877091434923	6.78333891053797	0.765207420869326	0.00527414246100074	0.063493853400392
Merged-chr16-92868642-4	chr16	92868068	92869068	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42494.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.7914220569628	7.51317163430212	7.56992526081998	7.40056273166112	7.6784996082319	7.23368104395501	-0.249496468575747	0.32280700293712	0.71622978868066
Merged-chr11-69414619-4	chr11	69414100	69415100	+	930.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-925.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.89992177900706	5.411102142573	5.41978246733651	5.84693280435646	5.82903942634336	5.57612597746692	0.28497698214303	0.416000732054517	0.786891925544846
Merged-chr8-94370819-6	chr8	94370219	94371219	+	868.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15710.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	6.5353568344505	6.54470585895154	6.75325008941582	6.71291914019223	6.88576207723954	6.68690829542977	0.259036697118348	0.320244925195544	0.714116509165426
Merged-chr1-131072623-3	chr1	131072123	131073123	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	25220.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.55799640164802	6.63748821204499	6.6580584898361	5.2314852766646	4.76444185587528	5.52534915326771	-2.60581920098426	2.1016145452202e-13	4.5777786146252e-11
Merged-chr6-82042165-3	chr6	82041690	82042690	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	562.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	4.99711542884877	5.20038104025097	4.25880828772981	3.74685937208772	3.66954591944879	3.82834932316781	-3.29788819598382	1.16928277550804e-08	1.04020749429674e-06
Merged-chr18-38232377-4	chr18	38231878	38232878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17820.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.9844344887076	5.02711095000652	4.99645437053302	4.75736423226325	5.27507011075488	5.02597306226595	0.0947311758841976	0.80992785585721	0.954862887748354
Merged-chr11-120489475-4	chr11	120488984	120489984	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027204)	TTS (NM_027204)	-2353.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	3.03194660878558	2.88674786455824	3.24734804502738	3.07196532116098	2.77306077037612	3.26469808042056	-0.0544910187954402	0.939555483661374	0.986720663284284
Merged-chr3-8668884-2	chr3	8668384	8669384	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1846.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	2.9935979539131	3.34982289726958	3.16266082388885	3.13879345460385	2.77530548814124	3.05817161918112	-0.813623554461762	0.25239634589487	0.649835540406508
Merged-chr19-6664604-2	chr19	6664104	6665104	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121534.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	1.93684628211028	1.90946909390331	2.13628547216517	1.97654036578444	1.93670218202881	1.80321315101698	-0.695628093584649	0.482578459566845	1
Merged-chr6-42349869-4	chr6	42349361	42350361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	33.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	8.20200022353768	8.03380060832788	8.08475093461604	8.09438758188831	8.19441594695913	8.11986853928753	0.0408872513313684	0.844727549667935	0.96373428957366
Merged-chr16-4587827-3	chr16	4587320	4588320	+	689.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6893.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	6.4397050012213	6.69289045530325	6.65066710337202	6.30726279679356	6.38291468605054	6.31898480743342	-0.418416587194201	0.121242040911348	0.465650022624116
Merged-chr14-17966625-2	chr14	17966125	17967125	+	958.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-15019.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.86033499571677	3.12219090781033	3.2703311619593	2.76255556650407	2.73615047332672	2.95213462856894	-1.34704246242706	0.0657774275639956	0.334670917986116
Merged-chr8-46849567-4	chr8	46849063	46850063	+	908.912476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109818.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.94859297902011	7.07913158608142	6.89910771859787	7.05882455004411	7.40507801885012	7.02806675717401	0.308405202181359	0.231834018676743	0.627997299394922
Merged-chr10-34210189-4	chr10	34209677	34210677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2626.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.4256190249867	6.41188041676591	6.41847165258274	6.37918488361083	6.41489691717866	6.51362070433681	0.0241803780603994	0.926972105666958	0.983578869536024
Merged-chr2-18917534-4	chr2	18917026	18918026	+	837.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	80595.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.82114651697828	3.37878135914373	3.82028291725892	3.56731069629486	3.485081714983	3.53010679918676	-0.556540389987855	0.345806342686059	0.734251662810595
Merged-chr12-113152721-2	chr12	113152313	113153313	+	822.916626	f0_balb.idr|f1_balb.idr	intron (NM_007763, intron 1 of 4)	intron (NM_007763, intron 1 of 4)	801.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	5.60412764337279	5.48443083023288	5.78248395607955	5.11096490379528	5.32925542685401	5.29797960054289	-0.71639277275979	0.0376938782944625	0.240100453580773
Merged-chr17-48274275-3	chr17	48273761	48274761	+	876.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 5 of 5)	intron (NM_001033922, intron 5 of 5)	9966.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	4.36729013903885	4.26173952372663	4.81749516475528	4.572126980775	4.48163132490376	4.74101712011588	0.258093988558236	0.572922154858892	0.869934493236159
Merged-chr15-83294017-2	chr15	83293517	83294517	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42243.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	2.592596172239	2.72934478927134	2.80943713179382	2.87173686661835	2.75817139266823	2.99973501385516	0.854393141244746	0.243845281547304	0.640958811221234
Merged-chr4-53231209-4	chr4	53230709	53231709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14987.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	5.80355689585987	5.37411359854643	4.8729380685007	5.15649227132556	5.03691760697156	4.94152278309663	-0.738907723581094	0.0813922346351332	0.377402343801625
Merged-chr11-116852497-4	chr11	116852018	116853018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011358, intron 1 of 2)	CpG	576.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	8.09416729125178	7.94600430593903	7.99103818571797	7.77437567927829	7.74071085762433	8.04004568004213	-0.227776819901657	0.30813268932685	0.704143917870008
Merged-chr2-23034746-2	chr2	23034246	23035246	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	Lx9|LINE|L1	5495.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	3.13571480468791	3.08526718399862	3.2830032977066	3.33300724469312	3.02580342680885	3.5118954228813	0.540115271804973	0.41274761042913	0.784588360697731
Merged-chr3-90084080-4	chr3	90083587	90084587	+	949.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	4566.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	5.60016736289133	5.5605193116183	5.9103866030454	5.46251666431405	5.4950455173252	5.60432630981619	-0.318803950529913	0.334554212241503	0.725027073042024
Merged-chr15-64090283-2	chr15	64089783	64090783	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 28 of 28)	intron (NM_001276461, intron 28 of 28)	-29835.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.17975972318565	5.1621033957712	5.65373368488142	4.82789582203779	4.71846258943793	5.03885347281181	-1.01673255050954	0.0106529952532418	0.105100122009929
Merged-chr7-45897430-3	chr7	45896935	45897935	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	366.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	6.01818861035962	6.30943507165285	6.6601225655404	6.24591024439227	6.41311787136592	6.61087774680966	0.133676870251438	0.670988868995886	0.910288613353274
Merged-chr8-71611999-4	chr8	71611500	71612500	+	918.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 1 of 11)	intron (NM_146211, intron 1 of 11)	976.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	8.12961840545568	8.20778870119294	7.79129007023829	8.21555227430382	8.48859754733334	7.77518032866313	0.198978254754071	0.46643479912107	0.817586753758551
Merged-chr11-78176505-4	chr11	78176017	78177017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080849, intron 1 of 14)	intron (NM_080849, intron 1 of 14)	149.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	6.65701758992427	6.63397330459551	6.52368545018183	6.60657830124548	7.01496669224991	6.94169537612184	0.40543447721987	0.132142289643525	0.486194810376229
Merged-chr11-54458380-3	chr11	54457870	54458870	+	775.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	20191.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	4.88033575012079	4.90316520719654	4.82409946687923	4.95601090166677	4.90696000759335	4.96372229865128	0.149223845848405	0.691816780341275	0.9184939224729
Merged-chr16-85122131-4	chr16	85121606	85122606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	51601.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.3561694132509	5.19322666454641	5.30652294706212	5.22352969752014	4.97059231270978	4.92263328031217	-0.490817952784726	0.179432807164747	0.560971531728926
Merged-chr4-134729005-4	chr4	134728506	134729506	+	955.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24716.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	5.97657797691028	5.50642350900236	4.98079534244358	5.5094784475605	5.48343768828306	4.87697024035864	-0.441147581235607	0.332592263188344	0.723682357558006
Merged-chr2-91963734-4	chr2	91963267	91964267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138306)	promoter-TSS (NM_138306)	-204.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.6668538191575	6.31809257922044	6.43003209759443	6.80678992615942	6.30393585836117	6.47121514896792	0.0985063693080659	0.742064753175571	0.935102057855142
Merged-chr4-139599928-1	chr4	139599428	139600428	+	643.0	f1_balb.idr	intron (NM_001205173, intron 1 of 8)	RSINE1|SINE|B4	-22966.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	5.07809048676212	5.21408105927611	4.93522727031672	5.43020307142584	5.44463488250831	5.2858650159759	0.61140873690658	0.0863371069027731	0.3892256591627
Merged-chr1-138172327-2	chr1	138171827	138172827	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	2799.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.75932058262803	5.94424291993543	5.73951250311056	5.60882313319852	5.76267126006205	6.22099722148725	0.102883644075517	0.761155683321621	0.941143355343272
Merged-chr12-110485309-4	chr12	110484790	110485790	+	873.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-449.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	7.2050899908365	7.61571440511294	7.33711972461704	7.36860349977724	7.68647961447357	7.2546686588605	0.0845809808778417	0.749141403699063	0.93719392324485
Merged-chr5-104032613-4	chr5	104032128	104033128	+	761.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10832.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	4.09003894064665	4.03234674851354	3.62406856075463	4.48152048943776	4.13262257966698	4.09144335223767	0.875178298287503	0.11041302224521	0.443978483302541
Merged-chr6-30048408-3	chr6	30047940	30048940	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164226, intron 1 of 11)	CpG	452.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	7.2636721868095	7.25424133517292	7.19515004047428	7.15021463049135	6.7733043217044	7.16880866966787	-0.308862903537835	0.224571625359176	0.619438735049331
Merged-chr3-144589277-4	chr3	144588768	144589768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	18841.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.39402953097911	5.35111256465128	5.34784191526885	5.18299327612494	5.18872812847559	5.28711490807164	-0.298742383724987	0.380848751172078	0.762849943367586
Merged-chr19-3852522-4	chr19	3851964	3852964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	CpG	691.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	8.1644772572747	8.18421018935855	7.53293550902043	7.76246199085591	8.01737048379063	7.90173494934542	-0.14769861973388	0.579991615747985	0.872724915243921
Merged-chr9-7221646-4	chr9	7221162	7222162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37157.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	7.7418137093555	7.923646200455	7.65730443086232	7.36943269052483	7.78785683942922	7.80087932395248	-0.16492988132175	0.505827877184032	0.838177729332582
Merged-chr10-80742399-4	chr10	80741898	80742898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-123.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	7.59689274050149	7.6286816112358	7.37364811589844	7.2489514067356	7.40357475806678	7.47311401002427	-0.245645730242329	0.295104803906326	0.691990077927385
Merged-chr3-89394884-6	chr3	89394379	89395379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	589.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	7.01610971872966	6.89075519180945	7.12449279268158	7.08172232797169	7.37773017049962	7.33210952342982	0.396368503858201	0.109861477897782	0.443094427298972
Merged-chr16-31233541-4	chr16	31233022	31234022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32284.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	7.55878952449882	7.40625564481847	7.4270147934845	7.3395161489973	7.65178270297685	7.17017835598022	-0.0769437310480984	0.760497335451412	0.940818648353272
Merged-chr3-142394909-4	chr3	142394391	142395391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	805.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	7.91883395871274	7.77555783678689	7.71906337386254	7.73493596567843	7.67177708568431	7.78419472595052	-0.117994775395902	0.589064783060062	0.876749027454634
Merged-chr11-20107879-4	chr11	20107380	20108380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5071.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	5.81531504069737	6.03839931515793	6.08782696509302	6.27079974783833	6.60320587101779	6.84549621343467	1.00749557047575	0.00105007569135215	0.0187017761399893
Merged-chr11-106084307-4	chr11	106083802	106084802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011947)	promoter-TSS (NM_011947)	-600.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	7.24895155540643	7.12606289002265	7.16675143499551	7.11454777662221	7.19598717298334	7.27129616056414	0.016636871674563	0.943267291176203	0.987374479679328
Merged-chr11-59549493-3	chr11	59549072	59550072	+	892.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 4 of 10)	exon (NM_145827, exon 4 of 10)	6886.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	4.57809440972215	4.68766276620159	4.56439867740328	4.69416685243578	4.49304321671623	4.67166798073736	0.00495035554461536	0.990474814119562	0.997892660866058
Merged-chr8-72162798-4	chr8	72162309	72163309	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1609.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	5.70057013068649	5.45911679113688	5.15172261475514	6.17634206576137	6.3131533400265	5.9008151243316	1.2086969869781	0.000538136965567467	0.0111165095906002
Merged-chr15-26362290-4	chr15	26361791	26362791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	53243.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	5.51340799417099	5.7170675140282	5.67088416164195	5.19019251203463	5.47479372729464	5.39567535357128	-0.519647096302076	0.124369994539189	0.471912923782061
Merged-chr11-86749134-2	chr11	86748634	86749634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	PB1D10|SINE|Alu	8433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.84542700895117	6.24825022794481	6.2228563521761	6.16182510213597	6.09124658925189	6.04937941065071	-0.0209731903237932	0.94472068903674	0.98786315338489
Merged-chr4-111001897-2	chr4	111001397	111002397	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-413109.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	2.69569292119222	2.83242591213608	2.91245929870757	2.63074464788292	2.98968635552436	2.60885292388936	-0.261455692203069	0.739360160691044	0.934213727972483
Merged-chr11-105262182-2	chr11	105261682	105262682	+	825.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361996, intron 14 of 19)	intron (NM_001361996, intron 14 of 19)	-30464.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	4.07934071501254	3.93309889346736	4.10979253357666	4.14126576477776	4.13427529081581	4.39429147650222	0.516475224667139	0.283023932443939	0.681020459305887
Merged-chr16-30676032-4	chr16	30675526	30676526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76303.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.77822855826705	3.4129605661207	3.33794050956701	3.64517355084474	3.70869087376895	3.74781036864582	0.579734422343301	0.329668123603343	0.721455791124277
Merged-chr7-7374703-2	chr7	7374197	7375197	+	759.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	24930.0	NM_001105062	100042591.0	Mm.469891	NM_001105062	ENSMUSG00000096373	Vmn2r31	-	vomeronasal 2, receptor 31	protein-coding	3.39492782848087	3.64461754180852	3.68592210610654	3.77025045620742	3.89572846527775	3.70378538540235	0.742985083024546	0.182829342768768	0.565723251389078
Merged-chr6-120042960-4	chr6	120042450	120043450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	3.97367760763686	3.59410744850499	3.73374390055108	3.69739901657871	3.66421155399673	3.40714983996208	-0.594695689572456	0.30718021108778	0.703275671477878
Merged-chr11-106673118-5	chr11	106672615	106673615	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	42166.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	5.79296025333451	5.75738341224529	5.8169070586151	5.37560621755235	5.49129415868904	5.9011987356296	-0.352525222261683	0.293135020849582	0.690190772969237
Merged-chr12-86889662-2	chr12	86889162	86890162	+	971.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4848.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.72988762104148	5.39888217285526	5.4995282657277	5.99057911390172	6.1907576867231	6.13802078775558	0.993047312586477	0.00169214474939776	0.0271343188105393
Merged-chr6-82798067-2	chr6	82797567	82798567	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23613.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	7.04510090175909	7.42323198592823	7.42469938192647	7.37486959275436	7.29801020748336	7.40946291801365	0.0772868074855551	0.755159979331262	0.939242515534853
Merged-chr11-121353369-2	chr11	121352869	121353869	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025793, intron 1 of 9)	intron (NM_025793, intron 1 of 9)	1078.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	5.90229085105909	6.13721413371252	5.95200248627632	6.061690315773	6.15048744439039	5.94097737943476	0.096891648204359	0.743889242926821	0.935814517574594
Merged-chr7-45019103-6	chr7	45018603	45019603	+	855.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	-367.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	4.46974854948856	4.58219315224479	5.06112389964852	4.76060218312188	4.43264892616442	5.06248145644256	0.109124662735165	0.815854639677454	0.956499413273802
Merged-chr2-4454778-2	chr2	4454278	4455278	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	53802.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.94599372725093	2.79866215145466	3.07065576541938	3.16415065805216	3.26982294927368	3.41906111244928	1.57618065043668	0.0210125493681155	0.166774679985422
Merged-chr7-16781275-4	chr7	16780790	16781790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009201)	promoter-TSS (NM_009201)	-56.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	3.67833284213066	3.73057808287547	4.11411488997595	3.78980328601485	3.32251031395059	3.61005956472905	-0.88073363071607	0.141382296333834	0.502136257665845
Merged-chr14-14800551-4	chr14	14800052	14801052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20263.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	6.14002474553226	6.4350181885111	6.65491282120024	6.3804219453326	6.15434504669443	6.63660779324218	-0.0394371584003099	0.898957286667691	0.976432549466174
Merged-chr16-33934915-4	chr16	33934408	33935408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	32130.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.90245074288117	6.14843654064115	5.86660108278831	6.12721799822832	6.14916984006232	6.11598950140824	0.249275947946449	0.396888023459571	0.773812221163503
Merged-chr19-10512427-2	chr19	10511927	10512927	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	B2_Mm1t|SINE|B2	12782.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	5.48063183882242	5.38064113789321	5.55452121099285	5.87148535679359	6.12556504373116	6.08258025629908	1.02469460421895	0.00105114696655931	0.0187168493031174
Merged-chr3-95952844-1	chr3	95952344	95953344	+	638.5	f1_c57bl6.idr	Intergenic	Intergenic	23587.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	3.93206928313709	4.05490798779176	4.20569875363087	4.12567906800588	3.81810972403965	3.94695862676496	-0.286088016839079	0.572026900914422	0.869773807126863
Merged-chr2-166032739-2	chr2	166032239	166033239	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	Lx5|LINE|L1	40102.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.21678962826383	4.06864532811983	4.43984065365491	4.61450467980637	4.57234924257716	4.23746847830449	0.657637118952251	0.159863569789426	0.532321973758633
Merged-chr10-63339070-4	chr10	63338557	63339557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019812)	promoter-TSS (NM_019812)	-22.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	6.90419740905666	6.55393236684337	6.68176393655941	6.81400738928329	6.32877169131639	6.67634365385224	-0.168482076314308	0.561997501257769	0.86560636450104
Merged-chr11-115403866-4	chr11	115403352	115404352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361463)	promoter-TSS (NM_001361463)	100.0	NR_154991	68572.0	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	5.38356779458959	5.66116515508503	5.22517772367455	5.35175199264551	5.15626435732997	4.99961470247499	-0.523053931366761	0.157736641505765	0.529231873645634
Merged-chr17-67352600-4	chr17	67352089	67353089	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1870.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.25317712415739	8.57685185406356	7.74475056504251	8.36368926267806	8.60524081088125	8.06271437366748	0.171995245030711	0.555462706993528	0.863239342468185
Merged-chr10-26824101-2	chr10	26823601	26824601	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	51589.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	2.78102281530471	2.99864031734819	3.06227935975925	2.81536893223704	2.77992432750489	2.90162465037219	-0.589959867627313	0.405688040258515	0.780370586352046
Merged-chr14-47534448-1	chr14	47533948	47534948	+	713.0	f1_balb.idr	Intergenic	Intergenic	33986.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	2.98327168669601	2.86418960076396	3.04669573887153	4.0497724508806	3.64626181045762	3.44522401091723	3.50973961452836	4.68743778308868e-06	0.000209482152344209
Merged-chr8-116237735-4	chr8	116237227	116238227	+	772.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267288.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.80998139497345	3.06706390810123	3.1360846841652	2.88358734429648	2.81570534828129	3.15204053246199	-0.263549158731436	0.710959842928148	0.924511716032697
Merged-chr4-133213017-2	chr4	133212495	133213495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-459.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	4.58775589418007	3.96607201203255	3.58314061283276	3.98010333240262	3.72380479128151	3.78035336986699	-0.836760688230916	0.177660988334372	0.558706727133464
Merged-chr14-40936604-4	chr14	40936105	40937105	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	11604.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	6.73082919658769	6.86386299528768	6.86399772309355	6.07708356099633	6.28503485838484	6.41026396601693	-0.899167605483645	0.000893445391700882	0.0165130617842397
Merged-chr3-88913931-4	chr3	88913424	88914424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144898)	promoter-TSS (NM_144898)	26.0	NM_144898	229524.0	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	6.05904500318235	6.15087472655713	5.92705369347494	5.97485527402283	6.17973198648203	5.83705284288013	-0.0655901118593093	0.828659572653338	0.9598352930318
Merged-chr6-123261703-3	chr6	123261201	123262201	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-406.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	5.55460127936928	5.72618602900853	5.560107391078	5.00154297385875	5.01408855799041	5.39566970588556	-0.954950390272915	0.00709360456857274	0.0789308169218776
Merged-chr13-54575768-2	chr13	54575268	54576268	+	721.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019968, exon 2 of 4)	exon (NM_019968, exon 2 of 4)	755.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	4.58400379081937	4.89167024697709	5.01037873694248	4.69127789286802	4.32824079422811	4.68379762735203	-0.62394514254709	0.153512342609136	0.522476745799114
Merged-chr1-105993399-4	chr1	105992912	105993912	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	3006.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	7.54024189352479	7.71828119501699	7.26144713143315	7.6058342502431	7.79694277698505	7.23169049351246	0.070151094509928	0.796511547625333	0.951430675491237
Merged-chr2-93047066-2	chr2	93046566	93047566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-922.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	2.71111788945412	2.75031634813818	2.76795410134364	2.49370395889914	2.66599014099083	2.65585168833747	-0.740428228655862	0.330326192966995	1
Merged-chr1-59907183-4	chr1	59906680	59907680	+	957.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-5826.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.593903115748	4.55193487445555	4.78360830589108	4.22922026237642	4.51351740424382	4.5854689221603	-0.468053197169414	0.285402460523418	0.682917350182106
Merged-chr11-77028256-2	chr11	77027756	77028756	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	29659.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	3.61094487450693	3.68324675567674	3.49599399040131	3.40680447460055	3.25532079685298	3.14827523526089	-1.25203292531396	0.0430291218049973	0.260201102263824
Merged-chr15-102283093-3	chr15	102282607	102283607	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3651.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	5.28642752465943	5.21845423191508	5.55963129347393	5.37260034915653	5.31422357613966	5.51393526290742	0.0877058207209466	0.80107115495773	0.952752818604963
Merged-chr16-22118261-2	chr16	22117761	22118761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	45038.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	6.5958805535757	6.59571548661615	6.4568717280684	6.52830618370051	6.77996046684481	6.16361786582111	-0.0366987792493481	0.901547537693534	0.977266678605068
Merged-chr2-124610440-4	chr2	124609920	124610920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172537, exon 1 of 17)	5' UTR (NM_172537, exon 1 of 17)	124.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.04808861465975	8.05938634857242	8.11752665851467	8.13377880489436	8.22033484457356	7.86507630583804	0.0210785159167194	0.924095027620185	0.982900348453983
Merged-chr11-16969865-4	chr11	16969329	16970329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	18419.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	6.36499733849847	6.13854299291746	6.48926465871801	5.86720715933982	6.08248783436562	6.41116681216511	-0.338252469071476	0.278573146554765	0.675809828237847
Merged-chr17-25985774-4	chr17	25985284	25986284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347334)	promoter-TSS (NM_001347334)	12.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	7.13248379687966	7.297170933831	7.18964298598163	7.21834406745452	7.25604683704012	7.01442802644086	-0.0529419966830709	0.825552558577256	0.958831094806068
Merged-chr11-109371327-2	chr11	109370827	109371827	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-7673.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	4.54093360877522	4.74454033949568	4.50188427247484	4.57028289920217	4.37770209439332	4.76682561888215	-0.0878878594438433	0.83976465366649	0.962784121274377
Merged-chr6-116227878-4	chr6	116227383	116228383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	19850.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	6.33530389199917	6.28332984030238	6.12165766570587	6.16847953389014	6.07738967551134	6.50795895585635	-0.00549285026483208	0.985220117222388	0.996873682039026
Merged-chr9-113705435-2	chr9	113704935	113705935	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	2824.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	3.98910663589113	3.86596616867761	3.80327043655692	3.78632585353344	3.68718868561219	4.36357862763481	0.244506821741607	0.664842093335904	0.907721942545399
Merged-chr15-25358115-4	chr15	25357621	25358621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55643.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.25161255585054	6.44927870713926	6.01140067754994	7.00778952029651	7.13007555220806	6.45410985801146	1.02707856330833	0.00116617331973197	0.0202975536511025
Merged-chr6-125490102-1	chr6	125489602	125490602	+	666.666687	f0_balb.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	4658.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	3.16382767014657	3.02033686832888	3.13293254101628	3.50089408332674	3.3385571973132	3.43598915859885	1.32491343604731	0.0358388014611433	0.232574870689347
Merged-chr12-112673093-4	chr12	112672602	112673602	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	1174.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	6.8704332107272	6.71219761370505	6.67716012026195	6.94164937841273	6.81762962293768	6.11071927569151	-0.11380170414632	0.721500968780596	0.928503945058713
Merged-chr5-34634669-5	chr5	34634233	34635233	+	852.1400150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026660, intron 8 of 12)	intron (NM_026660, intron 8 of 12)	2479.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	4.8428243820459	4.79143432986688	4.89246945245577	4.71587015718172	4.88263064939804	4.88488527199434	-0.0204226879800454	0.957951279186643	0.990000537228272
Merged-chr5-88767888-2	chr5	88767388	88768388	+	842.0714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2875.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	6.40465505136793	6.50664777629383	6.43704474514661	6.90552228199152	7.1032082202425	6.57108946204556	0.693413142206314	0.0127964682010589	0.119583167798036
Merged-chr5-32726342-2	chr5	32725828	32726828	+	784.916687	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	20014.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	2.78743018435069	2.82992813526805	3.13445665574016	2.43396269366046	2.37583129997637	3.04544458786766	-1.15857783247744	0.478338755263173	0.823759984020906
Merged-chr1-171502831-9	chr1	171502270	171503270	+	988.9021	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-708.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	6.73871720635796	7.23607147396406	6.36855281393733	7.01990031801913	7.61827978134667	7.32436830201411	0.758396514289825	0.0229960004783328	0.177204223726719
Merged-chr15-76246806-4	chr15	76246324	76247324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023168)	promoter-TSS (NM_023168)	17.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	6.86837465151289	6.80057798946698	7.07377767372016	7.04262403989719	6.68519473040343	6.72459445732083	-0.13204413851268	0.621336105750387	0.890659890903548
Merged-chr19-5819538-3	chr19	5818959	5819959	+	847.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16787.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	3.72105773263155	3.39245834897754	3.52982041994464	4.04166192234855	3.713129107358	3.76415276460012	1.0015182041652	0.0821318231916424	0.379123019025808
Merged-chr7-27233735-2	chr7	27233235	27234235	+	856.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133770, exon 3 of 15)	exon (NM_133770, exon 3 of 15)	722.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	4.73102585796264	4.42155121816486	4.44843143134605	4.42396521892837	4.29560181698529	4.28985325339008	-0.529175054692439	0.235435826662522	0.631597709612866
Merged-chr2-155534273-3	chr2	155533770	155534770	+	889.605591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019811, intron 2 of 17)	intron (NM_019811, intron 2 of 17)	16227.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	5.3902461454494	5.76908675388258	5.21897353206513	4.04117645713694	3.67514351280992	4.1701766474509	-4.17227988289612	2.68255532274543e-14	6.76394131196976e-12
Merged-chr6-131269757-4	chr6	131269254	131270254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22392.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	5.38160506137702	6.00089683650983	5.84057662042434	5.50043714210008	5.41744645037373	5.99081266342372	-0.212972779256274	0.57347896685442	0.870156136738611
Merged-chr7-92668105-2	chr7	92667605	92668605	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	1807.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	5.19716013342653	5.43048533006073	5.09822931159235	5.32922179234536	5.15868270051086	5.29708270776677	0.000176766549478462	0.999606814144567	0.999920050950963
Merged-chr8-31031839-4	chr8	31031346	31032346	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57681.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	2.62190306634669	2.41316430877367	2.48505733133019	2.66194119644903	2.92545770186761	2.75554706748573	1.5821097808888	0.0498956756777151	1
Merged-chr7-25753705-2	chr7	25753205	25754205	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360789, intron 1 of 14)	intron (NM_001360789, intron 1 of 14)	1054.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	5.08561666493456	5.31292349135989	5.42899536621578	5.6098297531799	5.49153435446784	5.40264547877497	0.451763436305231	0.19146791834886	0.578091345710453
Merged-chr1-171280540-2	chr1	171280040	171281040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008911, intron 2 of 12)	intron (NM_008911, intron 2 of 12)	646.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	5.55645669425133	5.60222472877274	5.38520803677481	5.44909393131003	5.56554384202254	5.65043115388886	0.0541640344017609	0.868789405055409	0.969726867826344
Merged-chr4-53149901-4	chr4	53149402	53150402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9993.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.66339601782472	7.82120340071799	7.33505734165462	7.46887580170625	7.85457946978245	7.47026280651793	-0.0164682170522022	0.950227994263745	0.988400419899929
Merged-chr9-114648662-4	chr9	114648166	114649166	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8466.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	2.8307253998191	2.81991911634944	2.71025217922409	3.07908549902124	3.02991063122196	2.97696759690239	1.16936877030114	0.0988187411574371	0.419333642002316
Merged-chr17-50182650-4	chr17	50182141	50183141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	7856.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.26354678036765	4.21555768352282	4.12279950552489	4.15318351612318	4.00346205828377	4.14403647561474	-0.308001123944701	0.513774050764111	0.842787325048798
Merged-chr4-109280247-4	chr4	109279756	109280756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007943)	promoter-TSS (NM_007943)	-19.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	6.53141600875734	6.10392258108507	6.57943844899995	6.26253803787826	5.70769580925774	6.54224269868983	-0.349568385578094	0.32403574949302	0.717287790132387
Merged-chr6-29533774-2	chr6	29533274	29534274	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	intron (NM_001252382, intron 2 of 8)	4492.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.50254209342198	4.62932288032182	4.72647463760123	4.5653438496526	4.41739794853897	4.89509230115582	0.0245884422300224	0.955003667260522	0.989683851514547
Merged-chr14-54395310-1	chr14	54394810	54395810	+	731.0	f1_balb.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	14162.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.61082775416642	4.54347219400838	4.7363594752177	4.31348202769378	3.7417997210362	4.18188854773703	-1.43005927304282	0.00443891802905771	0.0562867252913492
Merged-chr2-18989036-4	chr2	18988538	18989538	+	981.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	9083.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.51091225508738	3.11459147099905	3.25245122236735	3.46270003486537	3.15876197575327	3.07899847327691	-0.238310991057126	0.722153280645104	0.928717178651301
Merged-chr5-103754815-4	chr5	103754310	103755310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	237.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	7.80225794605604	7.98845688006214	7.70706652097511	7.83016418086784	8.18058086225034	7.85864049132949	0.186083524343696	0.433705016504592	0.797942046904748
Merged-chr16-11455158-2	chr16	11454658	11455658	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	49510.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.56905262533047	6.68513775772607	6.7135450590875	6.76140476259347	6.94420162556384	6.77224257913114	0.281279718366853	0.268659883867101	0.665911576312593
Merged-chr4-101158711-2	chr4	101158211	101159211	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 19 of 24)	intron (NM_146145, intron 19 of 24)	89673.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	2.98026500082275	2.79208410856267	3.48407877736185	2.86273603031711	2.70951001712427	3.30732466613397	-0.56731792438488	0.473441007140955	0.82090428702971
Merged-chr6-71908976-5	chr6	71908426	71909426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	-127.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	6.88323592484405	7.09105668516982	6.84779213394833	7.34720723818747	7.17700300265151	6.9652881613909	0.344749628651536	0.179610093715876	0.56110368604883
Merged-chr9-90054426-4	chr9	90053917	90054917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007801, exon 1 of 12)	5' UTR (NM_007801, exon 1 of 12)	150.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	7.79879216053463	7.90048720459612	7.88744252170875	8.05808613465502	8.18740179949708	8.0704961776546	0.351623468605778	0.0945988984633344	0.410010685661899
Merged-chr11-106475481-1	chr11	106474981	106475981	+	556.0	f0_balb.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	12315.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	3.26732892542088	3.25622840854388	3.33954315584623	3.07522058634959	2.80025510190268	3.24648757941042	-1.06304296706462	0.124188981573983	0.471570153735589
Merged-chr16-94497600-2	chr16	94497100	94498100	+	999.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007834)	TTS (NM_007834)	29029.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	6.03397081940339	5.86359292445966	5.57183436701444	5.54160221873682	5.43711574528447	5.21119734076173	-0.807139739399638	0.0192281155178046	0.157336989968618
Merged-chr1-171411328-4	chr1	171410835	171411835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	22.0	NM_001305676	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	7.4978927774219	7.70242066986151	7.39318036340504	7.58835469230203	7.57792696459896	7.49245267275601	0.0170425189473925	0.941276703683204	0.986929673509898
Merged-chr9-116137787-4	chr9	116137184	116138184	+	900.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	37679.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.5700580797201	7.53037860659918	6.74164342854291	6.6111762721234	6.52475836549454	6.41040296251964	-1.26127930298996	5.06913833741851e-05	0.00160073192705852
Merged-chr11-72607809-4	chr11	72607316	72608316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	CpG	555.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	8.2561732191066	8.47093409050769	8.49987767896113	8.31749341677917	8.16735116889477	8.48731412136203	-0.119787530172665	0.587151497327439	0.875769926947203
Merged-chr19-46862890-2	chr19	46862390	46863390	+	860.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	99461.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	3.7126534509726	3.54014323129488	4.06901767174691	3.87659096053556	3.21618166957811	3.43631146150521	-0.826189162463519	0.205803184467759	0.596447652812717
Merged-chr2-150748474-2	chr2	150747974	150748974	+	644.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-607.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	2.64271740027587	2.71978409421864	2.82177178630117	2.63749876270439	2.61088963659866	2.58506797280679	-0.636821516576802	0.397120472123599	1
Merged-chr6-124415128-4	chr6	124414650	124415650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	-83.0	NM_175933	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	6.93891419375157	7.17856856221309	6.91443818301198	7.43306693841232	7.22956681043204	6.97281538896473	0.316736788691787	0.227944860435214	0.622981752321771
Merged-chr13-47232344-4	chr13	47231826	47232826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	38323.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.15575211871748	7.20954850129684	6.9327515825557	6.87864386379496	7.17110289880035	6.91862626766509	-0.1634279482312	0.522990899799695	0.847921491573458
Merged-chr5-110780045-3	chr5	110779507	110780507	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152254)	TTS (NR_152254)	589.0	NM_019700	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	6.48357708076721	6.25586985755307	6.08666456161344	6.63197080528987	6.22063038414918	5.95191297057813	0.0232517496524591	0.943248207711527	0.987369647251762
Merged-chr13-81137600-4	chr13	81137111	81138111	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	173537.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.67492050565683	7.59418599815468	7.13032056466243	7.02388455601778	7.31987046929926	7.21261850369757	-0.45301164088407	0.0908489144267623	0.40111198512268
Merged-chr8-117336923-2	chr8	117336423	117337423	+	620.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-12247.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.12523369436178	3.90925992701109	4.24498393845059	4.20293608635742	4.08251808558136	4.22429863202346	0.211466636225276	0.66208773374705	0.906608895593334
Merged-chr4-141138620-4	chr4	141138116	141139116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1180.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	7.51623934218922	7.81468807869123	7.71376002857877	7.8604995945326	8.10963427116137	7.98030652530896	0.432961849943737	0.05941427629409	0.315627342185083
Merged-chr12-17700917-1	chr12	17700417	17701417	+	616.0	f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	10108.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.88581407797443	4.08452386488821	4.28049169961735	4.49114383492227	4.33952773382362	4.80707849404262	1.23956434441475	0.0109397168119443	0.106990121825136
Merged-chr17-47766165-4	chr17	47765656	47766656	+	794.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-19588.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.44993726092233	6.94851698075238	6.80769164286285	6.85652901337487	6.95005874584329	6.95152885646971	0.259196151621606	0.343520165741326	0.732367959280244
Merged-chr11-19926740-4	chr11	19926250	19927250	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2308.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	6.49314068557906	6.50940782503628	6.52664161846627	6.15389036464699	6.06571403185565	6.1444030202293	-0.646505853761044	0.0165895990309341	0.142607968604834
Merged-chr9-108443532-4	chr9	108443027	108444027	+	950.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004192, intron 2 of 3)	intron (NM_001004192, intron 2 of 3)	7045.0	NM_001004192	434439.0	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding	3.51124814132903	3.29141090104944	3.63637695024295	3.12670965066002	3.17062259920331	3.39827580133845	-0.99746948342222	0.114655422940728	0.452186398382538
Merged-chr7-127014540-4	chr7	127014028	127015028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080638)	promoter-TSS (NM_080638)	66.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	7.69900595797229	7.70131595652268	7.84268801068958	7.66453699877777	7.80139188053283	7.89892858324366	0.0629855131154885	0.775732164589607	0.9447881648961
Merged-chr7-145198510-4	chr7	145198062	145199062	+	900.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 19 of 22)	intron (NR_132643, intron 19 of 22)	9557.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	2.89896864332314	2.91368379985577	3.2235741675681	3.00117471774422	2.74166166922734	2.95651234715564	-0.538071953145421	0.450311966822774	0.808270954382514
Merged-chr17-35896844-3	chr17	35896378	35897378	+	790.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142744)	TTS (NM_001142744)	500.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	5.47154399136359	5.12840107424876	5.2134119594496	5.58598255232335	5.07415832694678	5.17617531309317	0.0315321426978647	0.934437004483163	0.985707838096286
Merged-chr5-69556926-4	chr5	69556428	69557428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172711)	promoter-TSS (NM_172711)	4.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	7.83485052162356	7.22370731721965	7.30426232416646	7.63602909419867	7.44267059769509	7.03945438367966	-0.127913406239258	0.668261256425795	0.909033703749898
Merged-chr5-67846483-4	chr5	67845941	67846941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	990.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	6.53973817432994	6.63445700962783	6.53953180672534	6.8210673334293	7.01572936250469	6.52633246597974	0.381169102925765	0.164901504365737	0.539606904800386
Merged-chr12-99326259-3	chr12	99325755	99326755	+	786.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	123819.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.07487106021102	3.11121960421462	3.15624420762414	3.14649481346363	3.14162109570888	3.22764509254576	0.249432650200213	0.694169391084129	0.919202859234248
Merged-chr3-61409856-4	chr3	61409366	61410366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45359.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.17029181292317	6.18583408092087	6.5173623416024	6.40001894895288	5.91065804526604	6.80009616864444	0.191193944741776	0.58286809376631	0.873826743013405
Merged-chr10-25319232-1	chr10	25318732	25319732	+	940.0	f0_balb.idr	Intergenic	Intergenic	-20069.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.91896344624087	6.40503890205488	5.64856577058738	5.81341914006273	6.1361284204981	5.71230382204247	-0.22974892282204	0.526096834397063	0.849279136234443
Merged-chr11-116095202-4	chr11	116094723	116095723	+	844.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8228.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	6.28929892453882	5.92209192443077	5.93968419558033	6.30577075509423	6.50209531241051	6.31093676655234	0.523330614894703	0.0793959367457053	0.372594787135367
Merged-chr11-106675485-4	chr11	106674946	106675946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39835.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	8.1319903886896	7.88786384675426	7.70396834913432	7.62281535739367	7.90897076547539	7.88770434955241	-0.160392692989856	0.507976241004362	0.839550861029232
Merged-chr15-96284066-2	chr15	96283566	96284566	+	945.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	4.62406466832097	4.18487378454328	4.68990920929423	4.83039573347273	4.53949811385016	4.51321869076779	0.302499238075595	0.509259727704957	0.84026772146894
Merged-chr15-59643974-4	chr15	59643493	59644493	+	766.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4661.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.26658614937465	2.94340696775351	3.0066405892593	2.92872231108063	2.96498858603702	3.07939050117118	-0.423556142155111	0.53625269311586	0.85392789486322
Merged-chr14-55585711-2	chr14	55585211	55586211	+	744.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	-457.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	5.07965481302153	5.19991273079767	5.43159422541735	5.41153162777827	5.53767301606076	5.3762426503118	0.425500020987031	0.222813782174511	0.617762786211506
Merged-chr18-62720157-4	chr18	62719647	62720647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168423, intron 1 of 4)	intron (NM_001168423, intron 1 of 4)	21240.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	3.57203594380248	3.7824516143979	3.86614689230899	3.9594888571913	3.75933905970935	4.20545424150284	0.742578858750915	0.17264358981164	0.551230561617291
Merged-chr4-125119982-2	chr4	125119482	125120482	+	754.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_153159, exon 6 of 6)	exon (NM_153159, exon 6 of 6)	7899.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	3.04700262746679	2.89580564179362	3.22825233403797	3.15821880791713	2.96854201803926	3.65132488383116	0.933627331758785	0.190263606670203	0.576501112519869
Merged-chr11-94070567-4	chr11	94070067	94071067	+	824.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 4 of 26)	MLTR14|LTR|ERV1	26362.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	5.41927720132582	5.55593457558645	5.48567962071975	5.8353666643608	5.95586648193838	5.77100325495899	0.686555519281381	0.0289651770845621	0.204196768182008
Merged-chr3-61404328-4	chr3	61403818	61404818	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39811.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.23093433190295	5.1887441274944	5.22221541303842	5.27942370945244	5.18265188927774	5.28590318939385	0.0662965838900412	0.848041215426421	0.964318271116593
Merged-chr11-115060022-4	chr11	115059519	115060519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	2020.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	5.66676459041583	5.27110545901023	5.41076291627668	5.83999031395774	5.51634487994594	5.44367551395912	0.285970810867556	0.418859006755997	0.788755230826602
Merged-chr1-36948124-4	chr1	36947614	36948614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-8587.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.25741055081296	5.98585464334935	5.49665544881284	6.02778893053675	5.74587145623328	5.76832506041144	-0.193422164569401	0.584585954041354	0.874608531067911
Merged-chr12-16887672-3	chr12	16887177	16888177	+	997.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7301.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.56295678952576	3.52971749540243	3.24698135159793	3.0130490542607	2.97810147265561	3.20196379417515	-1.81434147901782	0.00717616933544949	0.079572854219627
Merged-chr4-132611552-4	chr4	132611060	132612060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27486.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	5.97175146832994	5.38952782079273	5.13320267865763	5.68816617103277	5.39755842970088	5.12420128859307	-0.245022988986495	0.557701837387162	0.864302294338175
Merged-chr7-81856405-4	chr7	81855906	81856906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-2595.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.46308900960665	6.59564958115111	6.44360330941085	6.40263434715518	6.59300320883847	6.42858494606607	-0.036352452831569	0.891857982106661	0.974942585822634
Merged-chr1-192138161-4	chr1	192137664	192138664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-124.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	6.21947497618286	6.24652282132921	6.34015964642056	6.11414616215419	5.95268428894101	5.82580391712062	-0.496134542644245	0.0871023959754201	0.391276583940115
Merged-chr13-44937216-2	chr13	44936716	44937716	+	693.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	MTD|LTR|ERVL-MaLR	64880.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.65647425616705	4.61232281557986	4.60962602331061	4.41327581120125	4.54174704009937	4.89624552953853	-0.0112662780236285	0.979103692031427	0.995161162196021
Merged-chr7-90214712-2	chr7	90214212	90215212	+	940.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50720.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.81916840887216	4.90510246142434	4.67212959719085	4.99501813913916	5.12915752837298	4.60851612446207	0.297874848351093	0.472513922361063	0.820550293768681
Merged-chr6-37440557-2	chr6	37440057	37441057	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1591.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	3.8642908656941	3.81204194765291	3.82255754157089	3.8512935129611	3.49617970508357	3.94056539777848	-0.214211653071968	0.697097410619979	0.919839094614619
Merged-chr5-114567277-4	chr5	114566776	114567776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-975.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	2.97302355408083	3.1622688220642	3.10469839320526	2.91023396642091	2.84286288121601	3.06115474063355	-0.689862662715039	0.312206615828266	0.707054529881391
Merged-chr15-99399868-2	chr15	99399368	99400368	+	582.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001171034, exon 2 of 11)	5' UTR (NM_001171034, exon 2 of 11)	6649.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.15471472304698	3.01762948091771	2.93005624003045	3.25997065950331	3.05776299605959	3.12804325803832	0.476899125051022	0.474785463058901	0.821664499521211
Merged-chr14-66231087-4	chr14	66230569	66231569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17245.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	7.35192720531747	7.21356231976339	7.15583080751378	7.0316813405522	7.1966350248324	6.99022940331291	-0.247156593111514	0.306050373813822	0.7020655990236
Merged-chr4-46277452-3	chr4	46276948	46277948	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66746.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	2.46677083246703	2.70115425283872	2.53659337262594	2.08566325124458	2.05496346105367	2.14019326675192	-4.9185201076152	0.000176986527881109	1
Merged-chr12-21417221-3	chr12	21416717	21417717	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011739, exon 1 of 5)	5' UTR (NM_011739, exon 1 of 5)	219.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	6.71313299618008	6.94967394178757	6.42792359647898	6.95658100010295	6.63336017221429	6.97257675849558	0.204805007945773	0.47631518016699	0.822520021424582
Merged-chr10-7212771-4	chr10	7212274	7213274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-537.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	8.5298664165413	8.94201512291061	8.17735661114726	8.19544636860142	8.66183188349697	8.04991460428015	-0.357241583993959	0.221182949304851	0.615710108251916
Merged-chr13-98768510-3	chr13	98767984	98768984	+	932.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 8 of 25)	intron (NM_172591, intron 8 of 25)	46965.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.02466505942728	4.85812218436227	4.79386555447047	5.28686765578713	5.33515126897277	5.05366852798075	0.710547869901308	0.0581089402339361	0.31143381730946
Merged-chr16-91737067-4	chr16	91736608	91737608	+	924.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7737.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	6.40328756956912	6.35612205532838	6.21431972785695	6.00848716828083	6.17715685949175	5.88008194109462	-0.492449251404216	0.0902869642771554	0.399521481850518
Merged-chr5-34187224-4	chr5	34186764	34187764	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010753, intron 2 of 5)	CpG	446.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	5.32118050421656	5.01056222494998	5.2961682865311	5.18632230474208	4.7664216491801	4.9599882968303	-0.494327025974483	0.204517254697304	0.595099724746584
Merged-chr13-81783195-4	chr13	81782719	81783719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-28.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	8.55598943453458	8.62387121643527	8.30800749029792	8.47362905543229	8.70939083349709	8.41778810829595	0.0509665542244277	0.818613765438338	0.957000374759562
Merged-chr7-73535610-2	chr7	73535110	73536110	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6136.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.93381260866528	6.290882470078	6.01400213789451	6.18075428063625	6.4014486822927	6.45875918153051	0.427887418065686	0.151228779237393	0.518506648409409
Merged-chr9-108570837-2	chr9	108570337	108571337	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026378, intron 3 of 11)	intron (NM_026378, intron 3 of 11)	945.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	3.31861746971788	3.07665310116288	3.08998979237437	2.90079555143545	2.75809055193694	3.21933543854539	-0.91915230725953	0.20144781603484	0.590984054786189
Merged-chr1-34802354-3	chr1	34801893	34802893	+	762.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183019, intron 1 of 9)	intron (NM_183019, intron 1 of 9)	671.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	3.85579303858597	3.98218871565328	3.9098859983519	3.66115593396833	3.69550779971115	3.61344522896074	-0.842583406862631	0.112565287020311	0.448241038651517
Merged-chr16-93682542-2	chr16	93682042	93683042	+	924.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-677.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	3.04818699846368	3.16301144400352	3.23857933500199	3.03361831523835	3.02155415801628	3.14157602134649	-0.382331596922111	0.556673084841799	0.863715208807531
Merged-chr15-31531103-4	chr15	31530605	31531605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-68.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	7.94170961167097	7.53180051350855	7.51951146800577	7.83192705328878	7.17902844749112	7.48454528470335	-0.228657753624457	0.421270392948442	0.790226764066497
Merged-chr7-121446432-4	chr7	121445919	121446919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	54123.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.41199026603045	5.2601818661153	5.48070299171627	5.32201968397896	4.86922086898987	5.31043139875993	-0.423478519832825	0.257362228698939	0.654680413499888
Merged-chr19-56600939-4	chr19	56600440	56601440	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52679.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	5.83504124095949	5.9867381989758	5.6602143834015	5.29963657966903	5.7052028298517	5.25680674788512	-0.713099679148009	0.0437605189860784	0.263018294119735
Merged-chr5-135463581-4	chr5	135463104	135464104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69058.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.65715000185019	6.70553053310558	6.56431341293789	6.66148063919198	6.62684849985401	6.70628903136845	0.0226197382415083	0.928979547098939	0.983977379981026
Merged-chr2-71041514-4	chr2	71041016	71042016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	L1MC3|LINE|L1	14090.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.28599854466981	6.85745040798625	6.27637373117159	6.82810743293386	7.18883771001364	6.19593232004852	-0.110794486255809	0.860178839308259	0.967441103100897
Merged-chr11-61924643-2	chr11	61924143	61925143	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	L2|LINE|L2	5614.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	2.48973093599212	2.41969087896789	2.51633459354183	2.65019106988992	2.40955405002941	2.65348799258242	0.578269690116418	0.466040696517908	1
Merged-chr11-94349021-2	chr11	94348521	94349521	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	B3A|SINE|B2	21020.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	3.89840482040781	3.61681024782557	4.24301800409241	3.72409515718439	3.64140994242792	4.18730488261418	-0.218002522951856	0.71036117352547	0.924293540432205
Merged-chr10-95514130-4	chr10	95513654	95514654	+	861.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1008.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	6.67181172754337	6.36427072630082	6.13251306364537	6.48226200889701	6.61474747697275	6.3031168043981	0.0993148326845654	0.7407878188801	0.934667811508694
Merged-chr16-13673227-2	chr16	13672727	13673727	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	1369.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	5.75307714416966	5.49448421522271	5.62452815398586	6.03303737916062	5.9030979220229	5.82048699816356	0.534012249960345	0.0881972685434113	0.394173290415736
Merged-chr2-165997776-4	chr2	165997271	165998271	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	B1_Mur1|SINE|Alu	5134.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.25735338873615	5.16205591359681	5.43651018822327	5.04147007763632	5.50853627516098	5.68250015824569	0.29673961896764	0.432859694957132	0.797550668598533
Merged-chr1-52764697-1	chr1	52764197	52765197	+	863.0	f0_balb.idr	Intergenic	Intergenic	-37339.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.57413897798468	5.48991408053402	5.62091486152198	5.46873301005342	5.55685125802925	5.26204970742862	-0.214588642888982	0.520734303493287	0.846662720861138
Merged-chr6-30114308-1	chr6	30113808	30114808	+	912.6666869999999	f0_balb.idr	intron (NM_001361695, intron 6 of 11)	intron (NM_001361695, intron 6 of 11)	27143.0	NM_001361693	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	2.56782267057672	2.34066990984452	2.60466391542134	2.26787821236863	2.14046404730443	2.15518409434295	-2.33131199281097	0.0144435519744077	1
Merged-chr3-8738938-3	chr3	8738472	8739472	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71934.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.45504120250415	3.54839887186319	3.6304447022932	3.59911590237482	3.53180088729356	3.4858854751751	-0.00571424474496786	0.991932323415717	0.998351393644539
Merged-chr17-12371458-4	chr17	12370937	12371937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7172.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	3.29865973664614	3.37574785587329	3.38898547110977	3.53991866690811	3.1802324742137	3.40478599451567	0.0990029822279236	0.871871506293763	0.970261003150518
Merged-chr4-133752869-8	chr4	133752332	133753332	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080819, exon 1 of 20)	exon (NM_001080819, exon 1 of 20)	779.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.45913005830715	7.29144571232599	7.64792607914431	7.39468430849548	6.95987385874119	7.58944994094555	-0.202040438004009	0.466225087311404	0.817448575868834
Merged-chr10-58450404-2	chr10	58449904	58450904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 1 of 28)	B3|SINE|B2	3552.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	4.04169785184118	4.05350030091219	4.04556914624811	4.06090709295156	4.28795700117322	4.16201415149338	0.375339386643016	0.431503150196703	0.796911573849146
Merged-chr10-100492023-2	chr10	100491523	100492523	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	3734.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	3.95146989799913	4.14140917940803	4.38631793912615	4.91544894464893	4.97819873846271	4.92591163815051	1.96603131921802	9.99463244703345e-06	0.000400208554693339
Merged-chr10-57836279-3	chr10	57835789	57836789	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	41745.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.36375083619803	5.33729549731365	5.5896147836024	5.3122066633844	5.24234978980612	5.17501139698641	-0.354933327008472	0.304527001231767	0.700969682849711
Merged-chr14-52316053-5	chr14	52315511	52316511	+	831.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015772, intron 1 of 1)	intron (NM_015772, intron 1 of 1)	312.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	3.50866330570974	3.26843276129662	3.32775323661749	3.4634724298191	3.29705175175659	3.28296141093945	-0.0914093459736551	0.880991001292368	0.97262624933271
Merged-chr4-12499752-4	chr4	12499236	12500236	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-327721.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.04736985204693	4.9593995424293	5.42447943137682	5.00111953510237	5.13096605643823	5.4592612280274	0.113535795378033	0.772108866720804	0.943680976839558
Merged-chr3-21806652-4	chr3	21806155	21807155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-269997.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.17440201985827	4.30717065107168	4.36703714712065	4.28005856202394	3.66058520544433	3.62730737367272	-1.11327401430329	0.0528105838924614	0.29413077784976
Merged-chr13-119309440-4	chr13	119308960	119309960	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	99551.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	5.03534510168341	5.4949823065555	5.23839986650907	5.15119471574014	5.38739632263556	5.61804013334286	0.234312115147431	0.535792546036272	0.853668337370661
Merged-chr3-14912184-3	chr3	14911691	14912691	+	855.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25903.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	5.13175088412334	5.14309163034777	5.21990828837133	4.96908737322115	5.12185585265342	4.77866145526453	-0.389702649287902	0.300958125340466	0.697653874358754
Merged-chr12-17666054-2	chr12	17665554	17666554	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24755.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	2.6611175057361	2.58866745738752	2.98175063585299	2.91025380624364	2.64095909866236	2.93952001942668	0.429414731048864	0.573717263355235	0.870292198441646
Merged-chr11-115814871-4	chr11	115814365	115815365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029557, intron 1 of 10)	CpG	126.0	NM_029557	76265.0	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	5.47408740733974	5.44786554535154	5.46824793549979	5.09574130532764	5.03280332996512	5.61071582955325	-0.407634224860686	0.272661261877251	0.669922585433246
Merged-chr10-13300765-1	chr10	13300265	13301265	+	1000.0	f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23524.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	8.0268365196723	8.01385297933873	7.76775208359369	7.97138285558519	8.32902134523317	7.892110929533	0.198707100291085	0.411481441951228	0.783952169517317
Merged-chr18-14657587-4	chr18	14657092	14658092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25322.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	7.49574255008154	7.82626369772709	7.29285421906579	7.99438475621737	8.40391532486486	7.75818446487347	0.74826627473435	0.00810450965879512	0.0868684837935108
Merged-chr13-54301883-4	chr13	54301380	54302380	+	708.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69469.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	3.43964425684762	3.28807784017644	3.43936847819033	3.92245011262147	3.8232540942745	4.06954362783019	1.93515722685905	0.000791727015731096	0.0150647939499693
Merged-chr10-118085464-5	chr10	118084943	118085943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56344.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.43108790641425	8.29567204737972	8.06924015398784	8.15661887612232	8.32860699323957	7.96585382980389	-0.159372343347216	0.494335813696894	0.831938319365948
Merged-chr9-106566619-3	chr9	106566113	106567113	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4354.0	NM_026090	67320.0	Mm.335431	NM_026090	ENSMUSG00000041009	Iqcf4	1700042N06Rik|mtIQ1	IQ motif containing F4	protein-coding	1.86954982907869	1.96922371637544	2.12155963885918	1.69615204467784	1.84146089945494	1.73399616057749	-2.14672334057074	0.0592706049710283	1
Merged-chr18-36736044-2	chr18	36735594	36736594	+	856.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_028036, intron 2 of 11)	PB1D10|SINE|Alu	1024.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	5.81475625924584	6.18361358717093	5.95739337507116	5.75302277568329	5.819279739097	5.50904591467985	-0.508787260997194	0.116194869621081	0.455137876890266
Merged-chr11-84354559-4	chr11	84354060	84355060	+	843.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	158941.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	3.32581330969993	2.97607476990368	3.21365715389286	3.09455602523322	2.91995600237189	2.92581822790594	-0.885002145832173	0.199025933577881	0.587441023062265
Merged-chr4-128613425-2	chr4	128612900	128613900	+	753.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3302.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	3.33486122001459	3.25186499762206	3.40609380352369	3.53996215251895	3.53501351146262	3.68725187096192	0.969075284731362	0.0974228309621957	0.41615888488641
Merged-chr5-99339890-4	chr5	99339356	99340356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-86929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.16469724232378	8.28338132383549	7.81011417773985	8.15891579958436	8.43976352525369	7.77658817040318	0.077626822163635	0.775019378979378	0.944524767111052
Merged-chr9-38741208-2	chr9	38740708	38741708	+	581.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172767, exon 19 of 20)	exon (NM_172767, exon 19 of 20)	-11588.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	4.30066706815478	4.19236182702063	4.0939957696593	3.95298183091653	3.65710357300178	4.46017121331181	-0.397564280656169	0.474729670033073	0.821664499521211
Merged-chr5-142901589-4	chr5	142901057	142902057	+	750.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5197.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.16516896252525	3.49124035195422	3.65072958458508	3.61806310553824	3.8042874807318	3.66937208485002	0.910840023706368	0.133830319027901	0.489097037875759
Merged-chr10-19548218-4	chr10	19547719	19548719	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-43730.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.33447482382453	6.1614512384807	6.26956562174837	6.1992739840846	6.63566595484332	6.76941059083832	0.486164352011643	0.10374776739068	0.429463421175251
Merged-chr2-131085940-7	chr2	131085403	131086403	+	905.264282	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011426, intron 1 of 20)	intron (NM_011426, intron 1 of 20)	862.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	6.68862901893478	7.0769318873309	6.88715330314379	6.35881606381776	6.53302925198431	6.46389418377574	-0.693793602613597	0.0107799758322602	0.105963405676398
Merged-chr8-73324512-4	chr8	73324001	73325001	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	29039.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.83610236725243	3.74216222898291	3.97287041828754	4.7914959516489	4.79249827939904	4.29985154247532	2.27382993272743	5.39106700663085e-06	0.000236025770180422
Merged-chr2-73450850-2	chr2	73450350	73451350	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	3039.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.00226613674754	3.2414705255867	3.16760691695686	2.92806252549387	3.12282825186685	3.06534483732979	-0.43486107633152	0.516567621633976	0.844296391152365
Merged-chr6-82815379-2	chr6	82814879	82815879	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-40925.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.94903536655556	3.17890970956249	3.23002122880272	3.02770394257796	3.13247520252924	3.45840467904658	0.381715674316058	0.571018875577981	0.869331965951745
Merged-chr2-10079759-1	chr2	10079259	10080259	+	804.333313	f0_balb.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	751.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	7.67591621986798	8.2678276999476	7.59991260275958	7.89151825690424	8.12955042718221	7.38550705069515	-0.0634165662171824	0.837462915216437	0.962133986386607
Merged-chr5-20866174-2	chr5	20865674	20866674	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	B4A|SINE|B4	15950.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.921307930165	4.00291250289052	4.01384267941992	4.01866863642685	4.08182649532729	3.93439124862994	0.118984707503127	0.808570141001224	0.954713910404609
Merged-chr9-57907387-2	chr9	57906887	57907887	+	839.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-3599.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	2.26113096725552	2.26930078142161	2.39209752597232	2.39573586844371	2.43054435804206	2.52926194783111	0.949293325057049	0.249501137545842	1
Merged-chr7-6283759-4	chr7	6283246	6284246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2834.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	8.04364528448235	8.06541360170964	7.68311690128271	8.34721380944099	8.29617558115494	8.03429053699961	0.4055366906746	0.0874913879676924	0.392189818486148
Merged-chr2-177464863-3	chr2	177464355	177465355	+	827.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177568, intron 1 of 3)	intron (NM_001177568, intron 1 of 3)	113.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	3.50405672197486	3.44160632676303	3.31413395558433	3.4897588958745	3.49834132184724	3.71146422029476	0.503987379060505	0.389341326180292	0.769015431167891
Merged-chr14-54713088-4	chr14	54712632	54713632	+	929.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-958.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.40456924149042	4.49818287692684	4.59757383861037	4.63549816758685	4.98539611867649	4.49383503090692	0.571482018952248	0.191488350471535	0.578091345710453
Merged-chr3-137854083-4	chr3	137853560	137854560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10427.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	5.24262952118268	4.87571167939194	5.03081254680505	5.24192411884477	5.62653341119238	5.1677742625701	0.636158743548033	0.0990114420607025	0.419577424863619
Merged-chr5-102030064-4	chr5	102029570	102030570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	39851.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.75132256765117	7.72457050004972	7.7969914456402	7.8963682250864	8.09117869499309	7.69534641984367	0.22367895081198	0.32926924183055	0.721185445491877
Merged-chr2-128768279-3	chr2	128767879	128768879	+	818.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-49924.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.84625520945298	4.09607075692026	4.18773900582155	4.2645410341455	3.77100654052678	4.12007669628359	0.0474378693611456	0.928195079691909	0.983802612059568
Merged-chr13-52583078-4	chr13	52582576	52583576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	-361.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.69174150218767	7.52813471310539	7.60265121224048	7.50135883147873	7.60616088980231	7.35009649286006	-0.16375222132407	0.475147637056955	0.821727753368561
Merged-chr6-21949998-4	chr6	21949516	21950516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 1 of 11)	CpG	401.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	8.76342726526131	8.82669736377202	8.13073402811715	8.54307361317726	8.64656295663564	8.0969928300685	-0.222633952633254	0.428619180857659	0.795420465213011
Merged-chr17-70852368-4	chr17	70851880	70852880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164075)	promoter-TSS (NM_001164075)	-646.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	9.09888996164208	9.4027473219519	8.58711911845054	8.86908064100359	9.37647526487364	8.60923466621204	-0.108072353794229	0.720790662181441	0.928324696220711
Merged-chr2-166699566-7	chr2	166699069	166700069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	14263.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.88909342431303	7.56250592638854	7.28732274435023	7.8555912898647	8.02311361837227	7.6176048701671	0.34056235548057	0.20418419995268	0.594588048913789
Merged-chr18-54902405-1	chr18	54901905	54902905	+	1000.0	f0_c57.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87775.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.46439960039212	6.68126773131222	6.54927271974518	6.68696510881831	6.79608512781751	6.51946841792131	0.176785444754092	0.506885014247461	0.838606910757194
Merged-chr6-29531349-2	chr6	29530849	29531849	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 2 of 8)	intron (NM_001252382, intron 2 of 8)	2067.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.44769107577303	4.55616571683957	4.7420425737005	4.85798503135122	4.25795925105378	5.01241144461964	0.370511971559005	0.434257415833258	0.798287624970257
Merged-chr8-39006771-1	chr8	39006271	39007271	+	696.0	f0_balb.idr	intron (NM_001357305, intron 1 of 8)	intron (NM_001357305, intron 1 of 8)	926.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	4.69625954987232	4.42190547753418	4.6738429988143	4.7098591855515	4.69464731157321	4.39827944043205	0.0432229536246386	0.920277927939803	0.982323255407855
Merged-chr17-36262028-4	chr17	36261514	36262514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357889)	TTS (NM_001357889)	-4168.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	5.69933385825399	5.67627799191372	5.82315171775647	5.66172569113301	5.71832833500231	5.93101014761841	0.0702265593263205	0.822183832840621	0.958041123079214
Merged-chr9-57440124-4	chr9	57439616	57440616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-2.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	6.34326982439899	6.53325052068638	6.5939321478385	6.48089292089254	6.92330406330518	6.73295921142911	0.382620546619976	0.172874123185769	0.551616752005272
Merged-chr12-87147127-4	chr12	87146634	87147634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-31.0	NM_001252555	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	6.22672131457595	6.50166988569812	6.50837612281786	6.16618894487202	6.19003942142363	6.27358930432518	-0.34396935834545	0.220583115292594	0.61513103617086
Merged-chr9-40117038-4	chr9	40116531	40117531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11008.0	NM_146855	258854.0	Mm.377722	NM_146855	ENSMUSG00000049073	Olfr985	MOR171-4	olfactory receptor 985	protein-coding	3.85982908646261	3.88141315103569	3.4749091502321	3.30887919752308	3.08241326489284	3.24446590267356	-2.17957902814054	0.00078440098126158	0.0149561037692057
Merged-chr2-153239213-4	chr2	153238720	153239720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	2138.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	7.42988149428797	7.65984616119978	7.28652296663644	7.41967687656606	7.71294180188382	7.05969592022102	-0.0529188138267259	0.849218371130992	0.964611884188925
Merged-chr2-174326827-2	chr2	174326327	174327327	+	795.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-941.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	4.92187699371681	4.89683524307918	4.57951835326803	5.1359823955877	5.13466635175937	4.86096165599763	0.516625272311261	0.195606159253069	0.583394488267032
Merged-chr3-65974040-2	chr3	65973540	65974540	+	655.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-15791.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.40289696857994	6.3680020539953	6.51654730060557	6.53425842873774	6.83442116645299	6.5584123322673	0.373394705320428	0.16834178275359	0.544864752581325
Merged-chr7-132304207-4	chr7	132303714	132304714	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	-11450.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	5.11296733403394	5.25039302450118	5.41349879967233	5.11529866885696	5.02969377543149	5.30206381704236	-0.232870524764356	0.521475356788265	0.847076250198493
Merged-chr5-105498928-3	chr5	105498427	105499427	+	960.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-20544.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.07885601229962	4.05684697889236	4.01009110520273	3.34822454995448	3.13138889002416	3.38931696820808	-3.01969183786194	3.00329996333906e-06	0.000141987831448589
Merged-chr4-89265712-4	chr4	89265186	89266186	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16506.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	2.76870077423701	2.6296454645271	3.01553731413864	2.66616122495093	2.60992687208574	2.5431658454393	-1.0849651928647	0.164970315041734	0.539619859029508
Merged-chr13-41018572-3	chr13	41018082	41019082	+	721.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2332.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	6.10321747367344	6.03161844821499	6.14540560678026	6.17673126180912	6.80387229103173	6.56523035893738	0.752570531801324	0.0143998851350525	0.129122020341617
Merged-chr1-92082976-4	chr1	92082470	92083470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	97371.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	4.31362095539438	4.09881216173217	3.74881654063915	3.84030335304173	3.82583636836703	4.12659544197578	-0.447242998906693	0.408066913329138	0.781926100186554
Merged-chr7-123361639-2	chr7	123361139	123362139	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	8276.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.1861966402587	4.20781481117307	4.26845211588221	4.13975736768576	4.24202628961682	4.33543742688655	0.0540576630322775	0.906113390309468	0.978582776260923
Merged-chr4-53823831-3	chr4	53823323	53824323	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2222.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	2.93797433157981	2.76807169537305	2.91176238003152	2.95327564345231	2.56499063949305	2.92500096174767	-0.252891856685156	0.737064899915591	0.933504297835553
Merged-chr11-63135848-4	chr11	63135348	63136348	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3045.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.36637759509984	4.44266523430444	4.66291408595708	4.18068393615382	4.03740196732285	4.41826922696335	-0.742181756366352	0.112303176586052	0.44763602190707
Merged-chr17-17386354-1	chr17	17385854	17386854	+	681.0	f0_balb.idr	intron (NM_025934, intron 7 of 9)	MTD|LTR|ERVL-MaLR	12022.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	2.39563293064434	2.32362674300982	2.47023299672342	2.25078272568802	2.15795439796362	2.35395436882951	-0.984873026853322	0.25058920689802	1
Merged-chr11-90245023-4	chr11	90244520	90245520	+	816.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4456.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.015837310614	6.02830092085667	5.9782859677137	5.46365816281115	5.11130490090929	5.59281074258239	-1.14703977552132	0.00056782940662046	0.0116031309592523
Merged-chr4-129365340-4	chr4	129364838	129365838	+	830.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028603, intron 2 of 4)	ID4_|SINE|ID	12690.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	6.09893749410493	6.28016440099718	6.07323496612643	6.25634834186144	6.49305215617144	6.24296321073855	0.308070803914634	0.282447815148643	0.680426108942916
Merged-chr11-5790135-4	chr11	5789634	5790634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	L2b|LINE|L2	1651.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	5.90207184777624	5.90939133068165	6.22379540570098	6.17561550266005	6.23710276724201	6.18292619278777	0.328285768777018	0.2622228658643	0.660062930264905
Merged-chr12-75413108-4	chr12	75412619	75413619	+	903.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	L2a|LINE|L2	3662.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	3.52168891219867	3.63785564847597	3.88919458254556	3.43244879830655	3.73091385487099	3.61595252713125	-0.283480333441346	0.62448557389426	0.89205968496773
Merged-chr15-100635405-3	chr15	100634898	100635898	+	855.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285414, exon 1 of 3)	5' UTR (NM_001285414, exon 1 of 3)	161.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	5.25385338629625	5.22416985183046	5.37019193536417	5.34293653007448	5.41372253174518	5.06907032105751	0.0334368764079251	0.924939896179226	0.983070278897208
Merged-chr19-5913405-2	chr19	5912905	5913905	+	620.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	-534.0	NM_001291078	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	6.27486908181242	6.26749667132234	6.12305713471547	6.34200572131107	6.64596086910614	6.16166918211656	0.304697802255283	0.302716796800738	0.699329758126375
Merged-chr2-73514343-2	chr2	73513843	73514843	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	MLT1H2|LTR|ERVL-MaLR	15144.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.2546904396298	4.99062655011329	5.39281401703772	5.14077274330305	5.03619398992802	5.18441021178266	-0.201694434308464	0.585575514208829	0.875050597792612
Merged-chr9-55250611-3	chr9	55250098	55251098	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	33027.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.72922618964903	3.63447695104031	3.8445028644071	3.51082605369465	3.41286963300353	3.66670133689747	-0.730883348904277	0.194071171602972	0.581296921414137
Merged-chr4-154162245-2	chr4	154161746	154162746	+	683.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1562.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	2.62493714783082	2.62587203374207	3.08939598172988	2.7328284690922	2.7800336485007	2.88061639880697	0.0273967623301129	0.971390885005507	0.993770547532012
Merged-chr1-165671219-2	chr1	165670719	165671719	+	948.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-36678.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.27100523837703	4.16806233957236	4.55425810438729	4.40918773181993	4.48285530497853	4.58092806364568	0.413371182001245	0.358426467332291	0.744742283718357
Merged-chr7-118742582-4	chr7	118742063	118743063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	2292.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	5.67364913204354	5.56792154946541	5.92703212546633	6.05866170276948	6.1530616656152	6.14095595775494	0.704453852275591	0.0206584812187725	0.164824135128164
Merged-chr12-57237197-4	chr12	57236697	57237697	+	899.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	Lx9|LINE|L1	6772.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	3.44757902404451	3.36115062957028	3.48087291197978	3.311200439897	3.55741903578308	3.32755773470703	-0.0640413744040614	0.915078345769396	0.980959026698783
Merged-chr6-146638678-4	chr6	146638181	146639181	+	847.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3898.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	3.35880291349566	3.33397556760912	3.31238728479644	3.72963524571404	3.76412660173588	3.44616673056119	1.19951739853378	0.0427394199979659	0.259209032579736
Merged-chr3-123174236-2	chr3	123173749	123174749	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080451, intron 1 of 4)	MER74B|LTR|ERVL	61900.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	3.41389952004201	3.17253092184326	3.13328477039672	3.31732016030781	3.27259053904445	3.26638231172134	0.141967127588568	0.821708695234204	0.958023303204974
Merged-chr17-70958460-3	chr17	70957970	70958970	+	951.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	32046.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.07160987335303	2.89088499180543	3.10486658867295	3.54095057748089	3.53597885621103	3.24114465265877	1.85286492188036	0.005628992154348	0.0666254877921748
Merged-chr14-20707516-4	chr14	20706988	20707988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252081)	promoter-TSS (NM_001252081)	-64.0	NM_001252081	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	8.01455101253964	8.01406533164406	7.80708774480893	7.86989056009515	7.78178171093297	7.50413450086428	-0.312974571521989	0.178620204411291	0.559936447278822
Merged-chr4-149801352-1	chr4	149800852	149801852	+	597.0	f1_balb.idr	Intergenic	L1MC|LINE|L1	-27085.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.91618915429361	3.26672983617991	3.24646006054543	3.0826356661641	2.97392587933164	3.20661425599454	-0.284271198218963	0.674597863623969	0.911852710156386
Merged-chr14-93654943-2	chr14	93654445	93655445	+	782.0	f0_balb.idr|f1_balb.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	235724.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.42770837341114	2.75882287933716	2.61415154103556	2.39037829682375	2.25822895814302	2.49855152935592	-1.44157054801758	0.0925019914364366	1
Merged-chr4-59593701-2	chr4	59593201	59594201	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 4 of 11)	intron (NM_001301367, intron 4 of 11)	12138.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	3.89783629181234	3.69793602630444	3.86561981351835	4.08655394846857	4.27868895843067	4.17780912236871	1.0949627938469	0.0287407168109556	0.203216992216689
Merged-chr1-131279558-2	chr1	131279058	131280058	+	553.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019777)	promoter-TSS (NM_019777)	5.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.90659940545872	4.10000234781025	4.29306284731558	4.79279589210357	4.62363225813342	5.18304630533834	1.97125897670268	3.99210228033683e-05	0.00130571873640828
Merged-chr11-101553783-4	chr11	101553285	101554285	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 1 of 23)	intron (NM_008676, intron 1 of 23)	1131.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	7.70916793016905	7.93646321769923	6.98727520644355	7.34005407177176	7.80717413983375	7.30232746871806	-0.149732549562293	0.643977347595462	0.900016543869792
Merged-chr4-59441449-4	chr4	59440885	59441885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-2752.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.39424450456657	6.56189891693153	6.73748019465605	6.19798992876351	6.49555540071646	6.16971795568094	-0.418872896885816	0.149174379108878	0.51537803021029
Merged-chr10-117375315-4	chr10	117374808	117375808	+	796.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	intron (NM_001013391, intron 1 of 9)	1665.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	6.57821721452535	6.65921301684293	6.42453851807214	6.79936811505395	7.2914536994719	6.85846981118372	0.698565692536568	0.013413947918932	0.123249533838172
Merged-chr5-112264556-2	chr5	112264056	112265056	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	8736.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	3.32769823458264	3.38898376023442	3.09031595953296	3.29687531608166	3.33159257770315	3.28572630822351	0.0944245289702762	0.880847528936623	0.972620786559158
Merged-chr4-132592541-2	chr4	132592041	132593041	+	693.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	28474.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	6.16651901465881	6.28959737382491	6.43099069040762	6.25884568157287	6.3428667175101	5.99301743538405	-0.126153368451607	0.665549861204636	0.907855843812957
Merged-chr12-100185538-3	chr12	100185208	100186208	+	820.2820429999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2260.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	4.62433485454193	4.32607550649123	4.68733036505159	4.49310188646515	4.27882635316673	4.59983797977412	-0.235788747888043	0.598980760817413	0.880902871165758
Merged-chr1-128747495-3	chr1	128746952	128747952	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-155153.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.16871945623099	5.17155214320831	5.04886196521801	3.77107871952967	3.45300290696096	3.91596728763429	-4.65334651472078	7.24094364120806e-13	1.41765750234739e-10
Merged-chr4-10924164-1	chr4	10923664	10924664	+	687.0	f1_balb.idr	Intergenic	Intergenic	49666.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	4.81217035556411	5.12998048578928	5.31085087370206	5.00166671565347	5.38913354769423	5.68952167562417	0.586067821677009	0.150372468363466	0.517246479850651
Merged-chr3-51226797-4	chr3	51226208	51227208	+	887.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	2261.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.31349340300529	3.08743686263367	3.19659769883367	3.28165547649683	3.33826419514124	3.38203228911428	0.531809992114257	0.392785964695615	0.771320548318037
Merged-chr2-158129557-2	chr2	158129057	158130057	+	885.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	16835.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	3.55232772325803	3.51911098632507	3.97937285872161	3.90941172580207	3.36553146414965	3.81472030403944	0.0684109466886386	0.91088455060936	0.979995884239768
Merged-chr6-29773248-3	chr6	29772752	29773752	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	4809.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	3.66315061506507	3.67833061477934	3.82885887697067	3.71305338671883	3.96238449105852	3.99322457570936	0.56275872349938	0.28808266836866	0.685467048030297
Merged-chr13-45977100-4	chr13	45976620	45977620	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12129.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	3.21559167094686	3.16433743461798	3.62462594316127	3.20730664591607	3.32696365877223	3.49539215102178	0.00890621945988204	0.98893712422123	0.997469976378469
Merged-chr9-99074656-4	chr9	99074159	99075159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	B4A|SINE|B4	-38969.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	5.57193480439043	5.7564978994073	5.76056869314855	5.54836220800857	5.46395292176908	5.64160024241912	-0.280205714958474	0.382072402510211	0.763759290524196
Merged-chr5-36465526-2	chr5	36465026	36466026	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126488)	promoter-TSS (NR_126488)	341.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	7.52262518310435	7.90337133575149	7.58747056646713	7.88036470586197	8.08457229178741	7.56434935399613	0.262368764983411	0.312366106859407	0.707123550253801
Merged-chr2-136892893-4	chr2	136892382	136893382	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028834, intron 1 of 7)	intron (NM_028834, intron 1 of 7)	714.0	NM_001355669	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	5.81492825959309	6.53163894993755	5.93467715964577	5.99684081664694	6.31640707818573	6.28244970976172	0.103971253607728	0.764260273471532	0.941958626520407
Merged-chr19-29382114-2	chr19	29381614	29382614	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	14676.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	4.21278496081915	3.96959071529933	4.00363953305891	4.53937636644766	4.43215835059383	4.49139673908643	1.12156622517791	0.0160921724529761	0.139417159928979
Merged-chr7-55908466-2	chr7	55907924	55908924	+	678.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164661, exon 23 of 32)	exon (NM_001164661, exon 23 of 32)	54069.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	4.15673288385148	4.1727615510056	4.68738748251835	4.30131229312758	4.28216465650554	4.71652185364923	0.227710026433065	0.645051506543274	0.900402236225432
Merged-chr7-25781633-4	chr7	25781159	25782159	+	889.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	7074.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.90803508985152	4.88470496162068	4.94706763309518	5.17629086589399	4.70405139947377	4.93994427905095	0.083942789293279	0.833032272950279	0.960900298881182
Merged-chr7-30559265-4	chr7	30558724	30559724	+	847.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290569, intron 1 of 8)	intron (NM_001290569, intron 1 of 8)	422.0	NM_029377	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	4.94765975478051	4.96540467529039	5.36456111113578	5.31062217287771	5.32818870948077	5.36896726428397	0.496174402785164	0.17573853777711	0.555774586970482
Merged-chr13-9883220-4	chr13	9882725	9883725	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117904.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.54687843185258	3.48238346576023	3.24447773544294	3.51811252828973	3.65582180842357	3.43913762780446	0.39443690485347	0.512644059447833	0.842071365374768
Merged-chr3-10012501-4	chr3	10012008	10013008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272098)	promoter-TSS (NM_001272098)	-77.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	3.86828170754618	3.70241832549472	3.58449829398679	3.89727403907697	3.59759029060977	3.96598462126948	0.303612628015918	0.585439605352711	0.875004646540242
Merged-chr3-100534576-4	chr3	100534087	100535087	+	936.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-45395.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	3.58962967507338	3.88191914996956	3.66522271497942	4.5955225767713	4.18964621700278	4.43026231136729	2.02772593802575	0.000180049403072227	0.00459134254699167
Merged-chr16-92020046-2	chr16	92019546	92020546	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38276.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	5.5292201145787	5.74825794202065	6.05825800555145	5.659562572313	6.12126943552679	5.84756665672446	0.199663888303024	0.562348626702804	0.86571315867742
Merged-chr16-33546565-4	chr16	33546064	33547064	+	876.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 3 of 11)	intron (NM_001083902, intron 3 of 11)	27969.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	2.72601404482545	2.56392702560494	2.65865968566973	2.48786882660385	2.43065359941188	2.40850911967986	-1.26305280658636	0.117207617876644	1
Merged-chr2-158305903-2	chr2	158305415	158306415	+	746.25	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-578.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	6.37442275276834	6.40195698413636	5.90795752017769	6.96570401654004	6.82512984792028	6.15006472851781	0.715583652983981	0.0378538834957851	0.240622302361901
Merged-chr9-21265894-2	chr9	21265394	21266394	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153583, intron 1 of 9)	MIR|SINE|MIR	609.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	5.03544064644906	5.00167664216168	5.26735829174201	4.90442141890765	4.66911752813789	5.0478623270628	-0.495706922087881	0.205086956885335	0.595694220420628
Merged-chr11-86358363-4	chr11	86357857	86358857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080931)	promoter-TSS (NM_001080931)	-832.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	8.08406446109255	8.60295501891731	8.24644094219191	8.11365036836371	8.35736776223687	8.3268128221051	-0.0879016989625436	0.717658863230595	0.927141395317297
Merged-chr8-117056476-2	chr8	117055985	117056985	+	925.974976	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 12 of 42)	intron (NM_029686, intron 12 of 42)	25964.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	4.37597702044196	4.59710246404579	4.59222349736346	4.45949305191922	4.62662025248978	4.91305018474902	0.357019111852438	0.412440238307967	0.784508568959408
Merged-chr12-75721860-2	chr12	75721360	75722360	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	13869.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	6.34694099912274	6.66595932196564	6.33522916998268	5.53995572553689	5.82377505620514	5.64681100542004	-1.33889455532122	1.78173200163604e-05	0.000660964584895817
Merged-chr17-56442902-2	chr17	56442402	56443402	+	843.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	19319.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.19847656993381	3.40460195008512	3.37049020261183	3.1562585718296	3.00014093622771	3.49307924401301	-0.41555094002693	0.529313656364233	0.850855728615188
Merged-chr11-49082188-3	chr11	49081699	49082699	+	761.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-4818.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	6.12397194810884	6.38093162170792	5.79289377645321	6.45731043943438	6.71687990833421	6.37159284100368	0.64810231627889	0.0399830616223572	0.248879421608218
Merged-chr19-11060119-4	chr19	11059605	11060605	+	809.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9539.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.37552135481137	5.36490937130477	5.51631202703752	5.57132222345347	5.5525899046809	5.30600551963121	0.14712035055507	0.661483074871474	0.906392485696264
Merged-chr1-95528905-4	chr1	95528402	95529402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138692.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.68636374451127	4.06513462089249	3.68863742007544	3.64078213184466	3.80966916243274	3.64978499328226	-0.407975911985938	0.4665083735594	0.817586753758551
Merged-chr5-23410943-2	chr5	23410485	23411485	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23368.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.06822003432743	3.18450939175731	3.31528616473265	3.00842483401254	3.01513126665199	3.22287969943868	-0.473938516666345	0.469692949216329	0.819075991164043
Merged-chr5-45494382-2	chr5	45493882	45494882	+	683.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 1 of 12)	intron (NM_024434, intron 1 of 12)	1008.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	3.81479641730308	3.79124697271009	3.79766198496974	3.73279682621603	3.94528796883626	3.91688002302419	0.2186410745357	0.672996217098964	0.911095606012895
Merged-chr1-170898010-1	chr1	170897510	170898510	+	548.0	f1_balb.idr	Intergenic	Intergenic	-12470.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	6.87342614406156	6.67463714216248	6.87385959411434	6.65820808267316	7.09191403361708	6.70335458798044	0.0567737792664394	0.836760409008659	0.962001762335242
Merged-chr15-103309058-2	chr15	103308558	103309558	+	986.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030720, exon 2 of 2)	exon (NM_030720, exon 2 of 2)	1380.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	2.88986681095762	2.78177933874466	3.01651151054316	2.95703267699508	2.78797042167682	2.97222764112328	0.0460645478126369	0.947575686288063	0.988008807662239
Merged-chr17-78379442-2	chr17	78378942	78379942	+	990.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199448, intron 7 of 7)	intron (NM_199448, intron 7 of 7)	38710.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	2.90959224274995	2.85392001471475	2.96451465560961	2.61446591362903	2.39557322858215	2.86204007526202	-1.53220828010077	0.0651131910293765	0.332770809074109
Merged-chr5-101960370-2	chr5	101959869	101960869	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	109552.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.70014437979948	4.54345647826749	5.04016395051383	5.41425450964888	5.3085891230973	5.52331681801978	1.37986296520432	0.000375184191743054	0.00836728121858913
Merged-chr7-114194991-4	chr7	114194503	114195503	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	59677.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	5.6352372352834	5.25181877389891	5.30818145538978	5.83790719213167	6.09821736759597	5.33961750820152	0.731294979913855	0.0543249412190791	0.29933483422739
Merged-chr4-10962568-4	chr4	10962072	10963072	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45047.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.01989157104951	3.94598721270163	3.9983287186118	4.09677769496465	4.31989947744202	4.29865627614599	0.72983825728134	0.126998555564627	0.476304688155659
Merged-chr11-62575437-4	chr11	62574947	62575947	+	958.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	961.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	6.18914676422356	6.4665705137543	6.68193477803835	6.40904101559842	6.51331840987047	6.77007724095906	0.183257116502789	0.533554920323282	0.852484319020423
Merged-chr17-65656971-3	chr17	65656479	65657479	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-14775.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	4.44770219130551	4.7037061020263	4.6122846441066	4.55789099915537	4.41659486296357	4.63868367076153	-0.145495948294472	0.732850684608775	0.931916782998743
Merged-chr11-69848784-2	chr11	69848297	69849297	+	928.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2153.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	4.32148310217528	4.59779117141844	5.0732419804568	4.23595139382698	4.15830679232431	4.64422203617601	-0.832671938278907	0.0966137364361101	0.414361928837475
Merged-chr11-32607507-4	chr11	32606981	32607981	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 12 of 18)	L1MD|LINE|L1	-35074.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.50101244037678	3.51471156839261	3.61944237112424	3.43598768640584	3.56164703804486	3.53121009834852	-0.110158601262033	0.845899797589854	0.963945177091542
Merged-chr2-128755067-2	chr2	128754567	128755567	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	56152.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.00030831068182	3.9779978555579	4.38097981476072	4.25242714884097	4.22913662517655	4.40645703077666	0.478351805043256	0.322281355846673	0.715733500341366
Merged-chr9-78533472-4	chr9	78532988	78533988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51764.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.29847004184822	8.66390352285672	8.25007456736811	8.21563025474408	8.610642425563	8.01599554116243	-0.151093837363134	0.564684216521799	0.866552552710737
Merged-chr6-125353069-4	chr6	125352580	125353580	+	954.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	3357.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.83166352858865	5.66486614720503	6.02903128171685	6.24872645429927	6.30416152920932	6.17581146063903	0.705552896514895	0.0175067568916567	0.14775354776762
Merged-chr5-99459365-4	chr5	99458857	99459857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206430.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.7401844971243	5.86474349574257	5.99351683847719	5.44071988983559	5.81102718955258	5.29195040708649	-0.571629639329195	0.10117983348868	0.424204614205772
Merged-chr2-152737022-3	chr2	152736509	152737509	+	975.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010495, exon 2 of 2)	exon (NM_010495, exon 2 of 2)	758.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.77404312108894	7.04568803590492	6.73480100111382	6.80067389436243	6.91816385357517	6.98325679472724	0.0538691065018013	0.834828985114437	0.96138272464184
Merged-chr6-67041998-4	chr6	67041495	67042495	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-4588.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.18055582625961	3.0429755090942	3.08321381110309	3.17329365181455	3.05917433357449	3.21332409685222	0.182576263099664	0.777164112460013	0.945018349303776
Merged-chr2-32089790-4	chr2	32089267	32090267	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5098.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	3.84404060326604	3.82347844254254	4.17437003431975	3.89201422146695	3.64058007419872	4.39993719078404	0.168690533391715	0.768783577551129	0.942938240859946
Merged-chr10-37250230-3	chr10	37249744	37250744	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111318.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.64665619612901	4.47885929601302	4.90943300472123	4.70766245565701	4.35160197028682	4.72539500038044	-0.199358905412463	0.652675053211612	0.902998982169989
Merged-chr6-3397764-2	chr6	3397302	3398302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	1769.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	5.76180830318886	6.25411878867354	5.79613776022082	6.11123948882741	6.2977113984955	5.85873985425007	0.248366236154595	0.458224080405026	0.812946292086582
Merged-chr2-6647122-3	chr2	6646589	6647589	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	74573.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.48719757830592	3.65715214169641	3.77024166177314	4.50039688513822	4.13779140967439	4.14588538539745	1.98358682382996	0.000241308446576678	0.00582500528655417
Merged-chr2-122151364-3	chr2	122150857	122151857	+	761.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 2 of 3)	intron (NM_009735, intron 2 of 3)	3670.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.24203796223289	4.81285858122894	5.02491785457625	5.47815664824459	5.46562143459407	5.50488605211074	0.887743238617147	0.0150423133372796	0.132983511280106
Merged-chr14-54733731-4	chr14	54733228	54734228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-21554.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	5.77817307928924	5.56562005500359	5.86234017262486	6.00190317972611	6.19633141959935	5.89948885817277	0.555345204660332	0.0743743459065202	0.358735179073082
Merged-chr5-3928339-5	chr5	3927908	3928908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_194462, exon 1 of 48)	5' UTR (NM_194462, exon 1 of 48)	222.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	6.4657925060896	6.04919203737894	5.84938983890652	6.35162997082473	5.88992007911186	5.49428890581656	-0.31845747062708	0.402705204780195	0.778194911153312
Merged-chr10-13823629-4	chr10	13823129	13824129	+	677.321411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 2 of 5)	RSINE1|SINE|B4	45328.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	6.44678178312217	6.7214339761989	6.42522498833705	6.38542426927983	6.60141369183061	6.08092204825099	-0.2509883074933	0.402873444959059	0.778365878954155
Merged-chr1-20454862-1	chr1	20454362	20455362	+	812.666687	f0_balb.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	98408.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	2.75500132361457	2.86712840612891	2.86241452650351	2.87942630926763	2.7269118694209	3.05157704193685	0.285854190649437	0.689488470251623	0.917392209934871
Merged-chr11-116147080-3	chr11	116146610	116147610	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 24 of 30)	intron (NM_172571, intron 24 of 30)	-8242.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	5.44345148537182	5.58221861654639	5.65975943477973	5.35495604396564	5.14203860212187	5.35825375933562	-0.544726645767576	0.109312727675485	0.441774415679333
Merged-chr1-64193267-6	chr1	64192730	64193730	+	856.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71841.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.6590961527897	6.5447559230264	6.77210235020672	6.82421973581129	6.94090622924191	7.13379985267161	0.488184339040774	0.0595610398022954	0.315867112802383
Merged-chr15-96636704-2	chr15	96636204	96637204	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	5258.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.06686531989245	3.795677409203	3.82817490698882	3.76122722909191	3.8503698884807	3.94778332787712	-0.167811884248686	0.747596110734986	0.936653971666454
Merged-chr2-24304713-3	chr2	24304213	24305213	+	923.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13517.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	3.36456155084237	2.89220671951438	3.20177773881737	3.05043452809768	3.2969297987978	2.97048221463719	-0.211089208246027	0.767536333213949	0.942617496111852
Merged-chr2-69720286-1	chr2	69719786	69720786	+	658.0	f1_c57bl6.idr	Intergenic	Intergenic	-2802.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	4.84485589967686	4.81701586324571	5.53657521541885	4.77385059435493	5.07255378120985	5.248208376228	-0.119114459053663	0.787112168524758	0.948693859994902
Merged-chr6-89294819-4	chr6	89294326	89295326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9101.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	6.84641327621597	6.93886628144007	6.39668416560788	6.46905013459008	6.35081487170489	6.05813358759788	-0.715447494981276	0.0184260300248921	0.153043831734001
Merged-chr11-97839618-3	chr11	97839115	97840115	+	865.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010688)	TTS (NM_010688)	-1165.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.4977038789532	3.46967170679913	3.58895621133288	4.39629069438803	3.77640113770136	3.48213097278218	1.38756139805581	0.0260957880202492	0.191728064832191
Merged-chr1-164071259-2	chr1	164070759	164071759	+	909.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 5 of 7)	intron (NM_001164059, intron 5 of 7)	9183.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.26855095295323	3.39769339018711	3.38422316190877	3.9243122651278	3.39836828706984	3.67750200971295	1.20154106811061	0.0492763046274836	0.282159638300576
Merged-chr1-61141109-4	chr1	61140625	61141625	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163211.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	3.3412795210687	3.10833590278102	3.06291038781148	3.65438163830282	3.39358618781056	3.49667390200371	1.32433977480666	0.0400403133431995	0.249115776331759
Merged-chr12-69157098-2	chr12	69156598	69157598	+	603.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009093)	TTS (NM_009093)	2088.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	5.22310810394758	5.24130768876565	4.95282399668348	4.66006347840499	4.89019841634821	5.01814946126527	-0.631686526599121	0.104007449028221	0.430071471876029
Merged-chr14-50842369-2	chr14	50841864	50842864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 28 of 54)	B3|SINE|B2	28190.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.69558568716463	5.5999963781238	5.59151677259643	5.9883817889074	6.32625920267172	6.10391138245914	0.921229413366773	0.00276530093312894	0.039589669656537
Merged-chr11-98958474-2	chr11	98957974	98958974	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-1997.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.81038354985712	3.36805453217066	3.68419979277305	3.73528545534344	3.48918432358445	3.9937493141778	0.381686950200338	0.524369483591169	0.848666791348536
Merged-chr10-80117975-2	chr10	80117475	80118475	+	940.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	intron (NM_001301853, intron 1 of 8)	2172.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	3.46314287961066	3.56947116606543	3.41792327694015	3.5134203911154	3.28212761538662	3.59735986617525	-0.0919865259471815	0.876689092008607	0.971370432413299
Merged-chr1-134081318-4	chr1	134080823	134081823	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2168.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.45673935400901	3.31116320377427	3.50651868779962	3.86539366927863	3.66311662616351	3.73810739639633	1.19155726927707	0.0364137478901348	0.234767947810502
Merged-chr9-77912073-4	chr9	77911559	77912559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5306.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	8.04807671612913	7.90067160004158	7.67228149591688	7.84554701874174	8.30622818534728	7.80124849137019	0.179279040573699	0.488411717997971	0.829176645377721
Merged-chr2-26914862-2	chr2	26914362	26915362	+	746.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013677, exon 5 of 9)	exon (NM_013677, exon 5 of 9)	-1559.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	3.96769961680867	4.18334285649525	4.55216896603877	4.42048298672797	4.24529770743111	4.37810167134559	0.271407725274831	0.578289564004861	0.872407113854157
Merged-chr16-18812306-4	chr16	18811809	18812809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009862)	promoter-TSS (NM_009862)	15.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	8.29302529400636	8.52402185377661	7.94611682600948	8.44661409861003	8.62678078721071	8.25644831885048	0.241157432157548	0.336977651770134	0.726949528325002
Merged-chr18-36771436-3	chr18	36770945	36771945	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008214, intron 5 of 12)	intron (NM_008214, intron 5 of 12)	-5231.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	4.88546450394661	4.38214106614079	4.56107301545844	3.39330923126005	3.29718571204496	3.47890570793187	-4.83905659335784	1.02749742535063e-09	1.13540512308864e-07
Merged-chr11-120582155-4	chr11	120581650	120582650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-530.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	8.31182747282301	8.21895145535861	8.10239293855509	8.0665066190343	8.19703658458699	8.04379865438499	-0.154770950280512	0.465229381504059	0.816856011314407
Merged-chr2-49420740-4	chr2	49420305	49421305	+	754.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30681.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.18802378032037	3.55319511198899	3.68538951252782	3.04853197904676	3.07911646743743	3.88865324479643	-0.308694238342329	0.678316630550357	0.913379457468915
Merged-chr6-125425953-6	chr6	125425464	125426464	+	882.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-45460.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	5.49389864661695	5.21460952101258	5.16031935806673	5.74558120008031	5.57578487367365	5.35948176391888	0.527112093660026	0.137755824502034	0.496142779949151
Merged-chr4-48592518-3	chr4	48591967	48592967	+	924.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7293.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	3.84717255312203	4.08670137489706	4.50110000490195	4.18799749889685	3.90126816027445	4.70704518619511	0.362046866668451	0.522425345372939	0.84761564078759
Merged-chr1-55525300-4	chr1	55524815	55525815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx9|LINE|L1	119369.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.43138501307598	6.65348568065175	6.31186241324041	5.71573998662632	5.68758509239677	5.98946060622733	-1.17258759538052	9.17231243293899e-05	0.00263995078837768
Merged-chr1-106817769-4	chr1	106817240	106818240	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21015.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	5.96694447162817	5.91019416462217	5.48885386219744	5.80068205619298	5.81811107852778	5.80831198548089	-0.0193929784017614	0.952290644805387	0.989068549972429
Merged-chr7-127969319-2	chr7	127968819	127969819	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	1840.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	4.01777905059618	3.77717586986531	3.91648420467684	3.95296850867126	4.19105413466177	4.13003751557317	0.566049927157927	0.260208277721247	0.657649400461384
Merged-chr1-105787169-4	chr1	105786664	105787664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	6441.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.30584572848294	6.16608802874285	6.44410927697477	6.1692411441233	6.35822530060029	6.46830131836071	0.051878522649837	0.855063006381116	0.966059905720255
Merged-chr14-31481721-2	chr14	31481221	31482221	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359849, intron 4 of 4)	L1_Mur3|LINE|L1	13037.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	5.02051709376856	5.11489158458382	5.29073384369741	4.73765322198259	4.46354725337944	4.94087599711101	-0.948008357231276	0.0197513780776353	0.160151302580771
Merged-chr7-6153806-2	chr7	6153306	6154306	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	2165.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	6.30377160300161	6.14806266540453	6.26738091185612	6.29684686380967	6.36608883687696	6.11550601523961	0.0549190781418913	0.845120379658419	0.963760118842549
Merged-chr16-91359551-4	chr16	91359060	91360060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13223.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.2772468620607	5.79750375662052	5.88638642275073	6.78003238593318	6.90820499538024	6.34334199224643	1.14071584690414	0.000405558841593177	0.00888045791875924
Merged-chr14-27178769-3	chr14	27178290	27179290	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MLT1D|LTR|ERVL-MaLR	34797.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.36336234722117	3.70414731987243	4.19662156456498	3.49872850752793	3.38253770932838	3.74651142385945	-1.89274904851779	0.00170284061253098	0.0272847990925241
Merged-chr3-84772745-2	chr3	84772245	84773245	+	612.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-42832.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	6.79433990842671	7.01136150939611	6.57664735862851	6.74419697946979	6.98142138061695	6.52609327107241	-0.061528491611807	0.82959881296987	0.960125413857885
Merged-chr16-30601596-4	chr16	30601088	30602088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	1865.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.61711216457831	6.55565743304162	6.53625637503459	6.51478591307341	6.69649839558856	6.33058613116384	-0.058619873274058	0.829050351580456	0.959945752335123
Merged-chr5-34763017-2	chr5	34762517	34763517	+	687.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	1277.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	5.85420912230759	6.13642641520215	5.95936887520772	6.12245825771016	6.12573988050102	6.04378784225138	0.186841927155228	0.525470248293865	0.849019885443792
Merged-chr10-118766213-4	chr10	118765718	118766718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	102685.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.91408152060854	5.06865480172902	4.8628521560885	5.0053430929488	4.8700802529542	5.5175887972961	0.406555308782772	0.323313922175025	0.716669002812727
Merged-chr1-39735900-5	chr1	39735282	39736282	+	861.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14793.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	4.84505523570376	4.91698625393666	5.03863980544823	4.38345752349764	4.49608337275676	4.79292484834969	-0.87041984779172	0.0364034243330778	0.234719576281034
Merged-chr7-25688061-6	chr7	25687479	25688479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011577, exon 1 of 7)	exon (NM_011577, exon 1 of 7)	977.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	7.84661037592546	8.11598388216684	8.00389148926106	8.0196045152412	8.25203412508434	8.01567872844724	0.158013880116639	0.481750726860341	0.825208669475694
Merged-chr6-134614938-4	chr6	134614428	134615428	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17560.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	4.91096532347235	5.28274221653032	4.91457807096896	5.08092519049358	4.84458264296176	4.5606903612431	-0.436230533214339	0.299088826505334	0.695927450710144
Merged-chr3-146450591-4	chr3	146450092	146451092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001293672, exon 1 of 7)	exon (NM_001293672, exon 1 of 7)	125.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	7.5238603019422	7.60119318903543	7.51850971431663	7.36567059517156	7.69845226641497	7.58508790571297	0.0155848279858532	0.946629277055922	0.988007649185823
Merged-chr15-101319401-2	chr15	101318872	101319872	+	800.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	26160.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	3.19249199007542	2.98638976133133	3.42282783069781	3.22569556226269	2.77423716158082	3.2266226691871	-0.502849554859989	0.487367870801527	0.828421837588934
Merged-chr6-53565733-2	chr6	53565233	53566233	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	PB1|SINE|Alu	-7641.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.29475714563379	3.00664807677468	3.53127535762364	3.46617147361526	3.39636539799059	3.74774861160574	0.954335135538528	0.144654510176298	0.507498812534585
Merged-chr14-120477581-4	chr14	120477073	120478073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-888.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	7.93442736756815	8.02983521149913	7.74897501089933	7.8941406335747	8.20949973004372	7.65802909820434	0.0526689620154396	0.834399580730318	0.961299492933729
Merged-chr1-131937866-4	chr1	131937388	131938388	+	964.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25027.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	3.5411805363049	3.37705522115071	3.49872612911306	3.36935250889929	3.37473206044938	3.46115633992118	-0.278501662484491	0.633640197358238	0.896059441151508
Merged-chr9-118758706-2	chr9	118758161	118759161	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MLT1E1|LTR|ERVL-MaLR	46969.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.53985847683976	2.56193058664485	2.77621051636212	2.37698289196074	2.32646180552126	2.67227532282732	-0.990773535270937	0.233116579053644	1
Merged-chr18-69629906-1	chr18	69629406	69630406	+	542.0	f0_balb.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	283746.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.61280302788367	3.35112364685058	3.44452496877285	3.31488413727138	3.00826913530879	3.46155673351662	-0.815559080829964	0.209338874686197	0.60080783905906
Merged-chr7-28383096-4	chr7	28382635	28383635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3907.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	8.79462313447229	8.64867776505397	8.18126784244392	8.63273144049753	8.9660794138002	8.4888399542649	0.197337542442271	0.451330525721712	0.808957790071745
Merged-chr18-65698533-4	chr18	65698031	65699031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	263.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.1845775179929	8.40329048475522	7.75951354280784	7.6098169820926	7.92609068028713	7.47958957702019	-0.649823400343967	0.0172630538200213	0.146439410975261
Merged-chr12-102703455-3	chr12	102702939	102703939	+	756.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	1430.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.8718489812375	4.89551667287245	5.16959941264257	5.29056772752826	5.18063008510108	5.41298611051713	0.659262477367055	0.073362696980135	0.355874832650883
Merged-chr15-81813428-2	chr15	81812928	81813928	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_017376, intron 1 of 3)	intron (NM_017376, intron 1 of 3)	2014.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	4.05031148062443	4.12274634431018	4.10346508559609	4.10301967342694	4.09477777051774	4.26195844312522	0.163638231050795	0.729321613631853	0.930601789377265
Merged-chr2-170343331-4	chr2	170342843	170343843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13018.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.7418374355128	6.710476339086	6.27408546424099	6.87908417105444	6.87075179256454	6.15073708397364	0.137265326868538	0.678550329545016	0.913498554171186
Merged-chr1-16618735-4	chr1	16618231	16619231	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 1 of 6)	CpG	607.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	8.06347431947769	8.40157801352571	8.19667545106287	8.24954439884929	8.21823371595214	8.11048108385867	-0.0479689815528512	0.827466661765964	0.959467071709035
Merged-chr10-62530394-4	chr10	62529911	62530911	+	983.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2966.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	3.78660663436212	3.81873480367784	3.83462040763489	3.32369884627141	3.74346773808634	3.59387936881903	-0.810916486491767	0.163855338879535	0.537798828885102
Merged-chr6-3399543-4	chr6	3399028	3400028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010156)	promoter-TSS (NM_010156)	43.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	6.19675034791185	6.74062382263352	6.13480874491515	6.24644157757816	6.34937253649892	6.00719003518866	-0.299519460477246	0.357605714889086	0.744207696383239
Merged-chr5-143622463-4	chr5	143621947	143622947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011182)	promoter-TSS (NM_011182)	0.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	7.03910232912337	7.02271867910232	7.03511930326762	6.96728299197762	6.97345592279315	6.92947666784749	-0.112573995691919	0.634287049787857	0.896306748317281
Merged-chr16-18687102-4	chr16	18686603	18687603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57165.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	4.50538495611467	4.42017776563371	4.40780105548339	3.71708281091077	3.54035864628636	3.81243145368817	-2.39415022110706	5.94222575305186e-06	0.000256319709932576
Merged-chr10-39421947-2	chr10	39421447	39422447	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	52148.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.39090251582088	6.29362987282709	6.58894929614859	6.18115690765231	6.1977486449165	6.23277791581689	-0.362782065363086	0.1923286198508	0.579367163874643
Merged-chr12-85394217-4	chr12	85393722	85394722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19505.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.45947854864777	7.65474155520663	7.58560936452265	7.4588808548701	7.77019746150128	7.37469864669891	-0.0196960366243837	0.935600417827125	0.985869643214979
Merged-chr4-136888912-6	chr4	136888407	136889407	+	889.328674	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007574)	TTS (NM_007574)	-2730.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	6.2580777696106	6.31361793189577	6.68586256150388	7.06442238830823	7.17261820831566	7.01686048463061	1.04945207442354	9.30060885090198e-05	0.00266681466632478
Merged-chr7-125618190-4	chr7	125617683	125618683	+	939.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	14754.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.4671879285092	6.34535360163425	6.22248698097223	6.32296935051185	6.21924555940839	6.13111947807857	-0.207255303424892	0.458069671158449	0.812791853920592
Merged-chr10-13686267-4	chr10	13685785	13686785	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-133143.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	5.08189097044212	5.24653095941293	5.20174939928807	4.35302920539947	4.31646116776694	4.39790978309883	-1.9474861919581	2.29465685742482e-06	0.000112911772792788
Merged-chr12-111470617-4	chr12	111470112	111471112	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15211.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	3.61769920489061	3.41733134064906	3.7184347949329	3.68252138303225	3.6694788715509	3.83668194292968	0.491439868449136	0.377709701555474	0.760133237726209
Merged-chr9-66611831-4	chr9	66611317	66612317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18702.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.25276447700044	4.85748814067736	5.08521712039245	4.76989940396023	4.80456920501899	4.82774740753196	-0.602667290969537	0.124150141143211	0.471505936292233
Merged-chr8-70696696-4	chr8	70696205	70697205	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1034.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	6.51799211837032	6.28810864581338	6.14545512671155	6.50475883865264	6.69827300334864	6.59509298334796	0.43499098911681	0.119994052410442	0.463187284884396
Merged-chr12-102372739-2	chr12	102372239	102373239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	67074.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.77678459001101	4.050878813733	4.20362442492763	4.16386614592858	4.14643776433847	4.08890568611805	0.347889358656121	0.486271365785195	0.827743750051316
Merged-chr6-106794648-4	chr6	106794153	106795153	+	913.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 3 of 10)	intron (NM_021449, intron 3 of 10)	5434.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	7.47157077838863	7.50935944624279	7.15055478406325	7.57969092531487	7.81031832820296	7.45580741412183	0.34401428799888	0.169476727082326	0.546370379971568
Merged-chr15-38300903-4	chr15	38300418	38301418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289471)	promoter-TSS (NM_001289471)	-207.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	7.89552735741166	8.11247259050095	8.0075349620314	7.90814690505079	8.27364965500562	8.12692430685792	0.150466610237048	0.509721587511446	0.840498936388386
Merged-chr10-87857382-4	chr10	87856892	87857892	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-873.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.07459981208774	5.30191199278381	5.19901267847046	5.31651208156787	5.11810867710157	5.1288082034017	-0.0109279590106771	0.975722471029721	0.994540154302743
Merged-chr9-71160799-4	chr9	71160170	71161170	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	1963.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	2.66146755161511	2.92015784034891	2.52623243597171	2.65675610402268	2.48333785423202	2.91531450108923	-0.110933191369782	0.892329386743193	0.975086591707084
Merged-chr8-71603711-2	chr8	71603166	71604166	+	866.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001166213, exon 9 of 15)	exon (NM_001166213, exon 9 of 15)	6020.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	2.53979653646962	2.54549301392309	2.55458379476334	2.77883188128299	2.8562708943293	3.11049616158004	2.06841083395851	0.00880058214139722	0.0921655874174933
Merged-chr2-156857506-4	chr2	156857023	156858023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015591, intron 1 of 2)	intron (NR_015591, intron 1 of 2)	5422.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	6.67083845085263	6.83761791130933	6.66159759811236	6.61761200702846	6.97469527173947	6.61938377499119	0.0474063429162042	0.861462218870462	0.967819025542415
Merged-chr11-106751202-4	chr11	106750698	106751698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271372)	promoter-TSS (NM_001271372)	-28.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	7.9194146832041	7.62575431209867	7.46272783707884	7.70256698379944	8.03150517025243	7.75217503523497	0.218720511557195	0.384696726669709	0.765859059066255
Merged-chr15-101144921-4	chr15	101144425	101145425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001277259, exon 12 of 12)	3' UTR (NM_001277259, exon 12 of 12)	16403.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	6.55900181349167	6.1286473418755	6.92344293584805	7.0578837132086	6.8694977601529	6.62182997019068	0.465637503800748	0.147141378912098	0.511930918904408
Merged-chr12-79298061-4	chr12	79297550	79298550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	699.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	6.24239922166616	6.1632083652033	5.83922396400567	6.29864129315422	6.35556345289166	5.40174449811191	0.00226946788309801	0.995313606642341	0.998961028701257
Merged-chr10-128409257-2	chr10	128408733	128409733	+	777.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-53.0	NM_001358973	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	4.76951608336199	4.89464306209894	4.75850556622258	4.81045940570747	5.11332597306469	4.8249685807653	0.272075489059575	0.491768695173646	0.830726385853964
Merged-chr5-31202360-4	chr5	31201828	31202828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175311)	promoter-TSS (NM_175311)	-25.0	NM_175311	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	9.10206266055322	8.90685508676753	8.658654742122	8.72871532069474	8.86307536210139	8.42423824233174	-0.296012039085076	0.214168890487684	0.607411938158068
Merged-chr6-120467190-4	chr6	120466701	120467701	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	4004.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.2909068237099	6.22909227459621	6.41008480847626	6.08207835482134	6.24863393218902	6.41561494892724	-0.0940887969664823	0.740012068960846	0.934411645964066
Merged-chr9-75434284-4	chr9	75433803	75434803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.78511245218442	7.65930818579284	7.50175211713978	7.61579103270042	8.00054928949951	7.32474113675511	0.0457618379775192	0.865882249692121	0.968641478520565
Merged-chr11-97546089-4	chr11	97545604	97546604	+	967.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	(CA)n|Simple_repeat|Simple_repeat	29022.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.59726451064173	3.44525735735005	3.69962652761973	4.38846004259882	4.14834641646896	3.82863368948802	1.82043532931627	0.00111012801639528	0.0195177620337589
Merged-chr5-64488176-4	chr5	64487679	64488679	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11171.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	4.84342495352051	4.83127385018717	4.49007183851404	4.4029011636556	4.3643473819482	4.06232730816042	-1.10561925775183	0.0170400956393467	0.145134539811613
Merged-chr2-103606357-4	chr2	103605840	103606840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40030.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.49701906026472	5.17582086252543	5.52156282775801	5.44382718136954	5.44449516092515	5.34861390026206	0.0301231973606034	0.930671560345842	0.984649701786071
Merged-chr14-59297583-4	chr14	59297070	59298070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172603)	promoter-TSS (NM_172603)	-48.0	NM_172603	219131.0	Mm.254918	NM_172603	ENSMUSG00000044703	Phf11a	4933417L10Rik|Phf11|Phf11l	PHD finger protein 11A	protein-coding	6.187624865472	6.27304551553601	5.91874729033274	6.50876520107602	6.58821723429498	6.1955457699901	0.505074483401479	0.0906768726021912	0.400621283981532
Merged-chr11-50380057-2	chr11	50379557	50380557	+	891.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 4 of 12)	intron (NM_001347487, intron 4 of 12)	2338.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	4.20964364509699	3.98224317814049	4.21997437374675	4.11810905768471	4.04421333531945	4.00669287965715	-0.228946698683762	0.636327185824626	0.897080960965326
Merged-chr17-56929747-2	chr17	56929247	56930247	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5641.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.45393566905852	3.41468693773927	3.22825709436623	3.19842274149088	3.33741609012637	3.67695689356642	0.152322458434407	0.809971700653092	0.954876316118254
Merged-chr4-130899047-1	chr4	130898547	130899547	+	642.0	f0_balb.idr	Intergenic	Intergenic	-14287.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.90885364357858	4.05796986629234	3.82325342732778	3.93099953707646	3.99530741976414	4.39403163675691	0.511451071262768	0.32624014343383	0.718568901772104
Merged-chr6-72440531-1	chr6	72440031	72441031	+	633.0	f0_balb.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	-973.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	6.4129551794976	6.74067067325496	6.60542019419745	6.71132476736423	6.69535489895622	6.61392869424642	0.130357451639323	0.623961682522845	0.8917504625369
Merged-chr1-84363045-4	chr1	84362548	84363548	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78403.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.56029687730664	4.58628123659794	4.73260481523478	4.28292847869903	4.28678854521077	4.64906959462359	-0.545696980161599	0.215752363351385	0.609112973600893
Merged-chr13-19416249-6	chr13	19415726	19416726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20413.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	5.89757394347057	5.86202425093613	5.93944378289154	6.64409149922942	6.46158945938549	6.83160284096071	1.2440959697597	1.42928853846482e-05	0.00054554238857147
Merged-chr19-5712135-4	chr19	5711627	5712627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	7656.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	5.15878473312773	5.29730062871263	5.71536800243233	5.42153156081219	5.45924522023911	5.57388358056672	0.164800195597854	0.647347515559467	0.901331839739498
Merged-chr3-38421960-3	chr3	38421455	38422455	+	936.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62861.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	3.11746598848022	3.00636596449071	3.07121303150696	2.82944638652261	2.75406489732888	3.02730945589864	-0.959756807097192	0.170420536717653	0.547778885896491
Merged-chr16-21702853-4	chr16	21702365	21703365	+	906.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8200.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.88277840456383	4.97832952626977	4.44749605925787	4.34848404321974	4.52720780066464	4.22214088037497	-1.00820901615224	0.0291572091315161	0.205081408065528
Merged-chr9-65562323-4	chr9	65561812	65562812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17775.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.96547045341048	6.70388606855424	6.87594289187625	6.64420523936631	6.7117267203629	6.57158807280317	-0.317911221582366	0.218080762639873	0.612256700780707
Merged-chr13-8643529-3	chr13	8643003	8644003	+	988.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	227541.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	6.22574171174186	6.45143938909375	6.0966754822536	5.47369680416886	5.62894863096233	5.5735807765476	-1.25321498010481	5.5835284006063e-05	0.00173033233205828
Merged-chr10-68727072-2	chr10	68726572	68727572	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	GA-rich|Low_complexity|Low_complexity	3326.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.45156442131642	4.60383970567744	4.41044913363685	4.97215752571247	4.86608498358276	5.09423633344057	1.10330785104076	0.00716509418631061	0.0794929502127751
Merged-chr17-5568167-2	chr17	5567667	5568667	+	794.267822	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	75567.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.63902479894217	5.28978027799511	5.68038887606399	5.31140528727545	5.21521317923045	5.92545649053851	-0.0611007667401525	0.875627492704263	0.971054796190059
Merged-chr6-147799201-3	chr6	147798701	147799701	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108960.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	3.65441670492723	3.96657306389072	4.12637891183828	3.26229738726306	3.08287683280241	3.22784189501166	-2.97519346454817	1.34112691965684e-05	0.000516153971927873
Merged-chr5-109552223-3	chr5	109551727	109552727	+	783.244446	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6766.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	2.10320497701113	2.03963262868092	2.0882880738348	2.41506813903341	2.13928770160208	2.36697065977543	1.717402221514	0.0627912602793344	1
Merged-chr14-31570021-2	chr14	31569521	31570521	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	7362.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	4.64194817626927	4.548156058209	4.24355813107793	4.67675016736468	4.86485216423342	4.79469112341992	0.669336353370594	0.121940131033024	0.467123724644162
Merged-chr7-100780456-3	chr7	100779971	100780971	+	802.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	73836.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	2.83655499669397	2.75486477372744	2.74383664646601	2.51790602646399	2.38119928619266	2.62989169811071	-1.64997643380146	0.0416344683723817	1
Merged-chr6-57692056-4	chr6	57691552	57692552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025574)	promoter-TSS (NM_025574)	26.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	6.51720819926177	6.54304069842418	6.40143234120646	6.34621285400084	6.32080840786025	5.93088483550131	-0.437324508489848	0.130691522091671	0.483186228268893
Merged-chr1-172451307-4	chr1	172450776	172451776	+	756.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24084.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.18377973020701	4.34436906657701	3.94721988072733	4.08004813734609	4.2338222667069	4.35077969012368	0.121960842130098	0.803046523035421	0.953422605427866
Merged-chr11-116027984-4	chr11	116027473	116028473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2343.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	8.41302938244489	8.38255355123596	7.93258283273314	8.16548771715962	8.63432618313618	8.15430025321551	0.109034870841661	0.678315711316918	0.913379457468915
Merged-chr1-164336074-4	chr1	164335569	164336569	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178071, intron 5 of 9)	RLTR12B|LTR|ERVK	28397.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	2.26221230959486	2.31655171040338	2.60991068999162	2.48427091154797	2.61522266493499	2.62230746421163	1.08316696096225	0.196898820473422	1
Merged-chr4-146478900-2	chr4	146478400	146479400	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-23100.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	2.97649574991736	3.21005670173219	3.00124769452256	3.02808193472104	2.99007069496944	3.40871367395346	0.343007562616587	0.618541816734542	0.889457395650025
Merged-chr2-124645912-1	chr2	124645412	124646412	+	558.0	f0_balb.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-7669.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.55439713634144	4.68338909318184	5.21416890880282	4.82396653274124	4.72314716347742	5.33214943590396	0.304972836339454	0.506570782804527	0.838470324751826
Merged-chr19-46523793-5	chr19	46523329	46524329	+	965.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22181.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.31814489941141	7.87060944215061	7.74431208829526	7.74884645847741	8.05727380110276	7.66188361890802	-0.2387408852163	0.371442549548017	0.755590455851299
Merged-chr8-94179068-4	chr8	94178555	94179555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-34.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	8.10906108829439	8.3972215586888	8.02166822839215	7.97125159296562	8.38996147091483	8.1348747520685	-0.012909490729839	0.957618250975763	0.98996830630481
Merged-chr15-100664106-4	chr15	100663616	100664616	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5384.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	4.74770914301808	4.77719740820603	4.89505568141333	4.59369218484438	4.35993125277044	4.95911718999057	-0.370291256891787	0.395131293697941	0.772579826044138
Merged-chr12-80054499-4	chr12	80053979	80054979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58534.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.39188684621767	5.10642982412297	4.89325862783119	5.32135823306384	4.98627182543129	4.8384876728651	-0.179907905894396	0.656946057167962	0.90473472789738
Merged-chr7-90128861-2	chr7	90128361	90129361	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046006, intron 1 of 3)	intron (NR_046006, intron 1 of 3)	613.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	5.41450101422484	5.39266869051996	5.41476093772129	4.96915335996711	5.20682391139638	5.4486928383896	-0.383361966926858	0.284989522880519	0.682557372052335
Merged-chr10-117845311-4	chr10	117844823	117845823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	651.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	8.30307524277288	8.08668136386954	7.76974159360846	8.04840123783479	7.87664319831569	7.79075577929186	-0.237263114618272	0.334306933987388	0.724883973366998
Merged-chr11-115279929-3	chr11	115279413	115280413	+	970.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2944.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	3.38858833223922	3.45837606282361	3.75605295939858	4.47225466020453	4.39232308950244	4.66602888976308	3.20247408567023	3.46650099135462e-08	2.79496719465732e-06
Merged-chr1-43843658-4	chr1	43843117	43844117	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15909.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	4.18318643650524	4.61347889016042	4.6034344018109	4.53129380790977	4.12204994980651	4.51089675325721	-0.216166514213682	0.652277385885675	0.902922920059478
Merged-chr4-145218044-4	chr4	145217567	145218567	+	972.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-23062.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.41780562579517	5.27884163247757	5.51881491071136	5.5567228993703	5.4749754110282	5.46677983038056	0.191072970867584	0.565041214299108	0.866552670637515
Merged-chr15-25354198-2	chr15	25353698	25354698	+	751.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59566.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.35551039509585	4.33857412301544	4.0854265805448	4.07613825263582	4.45945404470369	4.10513638115141	-0.0923926690719756	0.850804928928311	0.964981271430729
Merged-chr7-19823632-4	chr7	19823136	19824136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-881.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	8.03052615795124	7.84191983923922	7.85796512870274	7.89515272279591	8.15485982057359	7.71527371858279	0.0408168454995565	0.863279458616151	0.968226518655498
Merged-chr2-33918971-4	chr2	33918472	33919472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31026.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.43782904707084	5.18328816548151	5.30845118948964	5.38851612057973	5.42909633032551	5.24246585768228	0.0957751293899203	0.782324925338969	0.946484752418558
Merged-chr19-32495419-8	chr19	32494947	32495947	+	883.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9678.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	4.74037282119626	4.87186823368888	4.62032511881939	5.21495799298894	5.38881308697073	5.11891592674426	1.06273112547554	0.00569375490682375	0.0671151662115017
Merged-chr3-21938238-4	chr3	21937731	21938731	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138421.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.54312492626065	5.31224916112087	5.34328540822387	5.10944540283829	5.36021492415229	5.03262562807741	-0.434011467884375	0.231198850914765	0.627040221216289
Merged-chr2-166826976-4	chr2	166826489	166827489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 2 of 38)	intron (NM_001085495, intron 2 of 38)	21408.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	6.24875263937158	6.50423060971771	6.12087021581704	5.88688391951567	6.21180616829008	5.92215352587518	-0.477634830569057	0.121128781781141	0.465472852465948
Merged-chr15-96621894-4	chr15	96621403	96622403	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 2 of 15)	intron (NM_001166456, intron 2 of 15)	20059.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.7962036676596	6.10402539496801	5.93522292830465	5.48656205657502	5.42039324667987	5.72952282879444	-0.752351246854153	0.0200743144736789	0.161839313896509
Merged-chr10-60251823-2	chr10	60251323	60252323	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-25805.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.79276630730171	5.78845508161179	5.62043499321732	5.8002884969014	6.0385514256921	5.53505004484533	0.146845149513548	0.656600425188302	0.904693205515276
Merged-chr14-34768579-4	chr14	34768069	34769069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-51567.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	5.25646121140384	4.97287673701768	4.92577829670559	5.16584599072399	5.15112458715124	4.61157904573824	-0.109268200072224	0.792995069783654	0.950168967319829
Merged-chr11-95834527-4	chr11	95834022	95835022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7773.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.25133074065679	6.26933357394751	6.45648354119325	6.40175693066886	6.37096314443031	6.09421158279334	-0.0280742296908105	0.921225699359264	0.982526400261012
Merged-chr19-3915813-2	chr19	3915313	3916313	+	743.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 8 of 9)	intron (NM_026316, intron 8 of 9)	-3039.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	4.71561262874639	4.40782811440848	4.63504224810087	4.70882116287249	4.72599305390093	5.18044270463487	0.666772884301932	0.123453349101271	0.470220248592576
Merged-chr2-155135301-4	chr2	155134826	155135826	+	891.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243712, intron 1 of 25)	RSINE1|SINE|B4	1845.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	6.97000364025229	6.576035647384	6.81789208751667	7.45424663665965	7.54174696883644	6.72994762593329	0.760300219482948	0.0146960441851812	0.130742768680995
Merged-chr19-46962390-4	chr19	46961884	46962884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028353)	promoter-TSS (NR_028353)	-33.0	NR_028353	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	7.28055728165819	6.62560773101165	6.73606038447946	6.87618594595111	6.28858248444853	6.74782711277866	-0.408006592141002	0.211219264270157	0.603686756479622
Merged-chr5-76393086-2	chr5	76392586	76393586	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29309.0	NM_019515	56183.0	Mm.154879	NM_019515	ENSMUSG00000029236	Nmu	-	neuromedin U	protein-coding	3.24923318641064	3.35003769821031	3.09561640985282	3.26347206581908	3.35895510168848	3.45749541593849	0.470068702123394	0.453868805163944	0.809979841654596
Merged-chr4-135307093-4	chr4	135306598	135307598	+	974.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34338.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.20054984236632	4.95832049400945	5.3269954697153	5.08900998565686	5.19943168561478	5.41831131744696	0.150608972046864	0.684637658516912	0.915930759709583
Merged-chr11-72206503-6	chr11	72205869	72206869	+	912.577759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1113.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	6.12290020149727	6.26056476284216	5.95579632066552	6.61667589105566	6.55564233926472	6.31121487644178	0.624503691219779	0.02995796237879	0.208737565277295
Merged-chr16-91729901-3	chr16	91729403	91730403	+	931.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	CpG	532.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	6.50783005338674	6.16663012113961	6.40140938513875	6.78945474781118	6.35260395302767	6.36528814586924	0.25246147838817	0.39922043068492	0.775712434823128
Merged-chr2-72376230-4	chr2	72375734	72376734	+	875.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 7 of 19)	(TG)n|Simple_repeat|Simple_repeat	90533.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.24424376653681	4.23412743087661	4.3028659262116	4.87294638894253	4.86571217128762	4.42014059473849	1.21765180998431	0.00619806910975992	0.0714127080633426
Merged-chr17-71102095-2	chr17	71101595	71102595	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-81437.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.98531392871214	3.84323219583952	3.95341627269648	3.70169084029145	3.71251405686207	3.87663381094537	-0.534126277608025	0.303488358132409	0.700048369821532
Merged-chr2-163100689-4	chr2	163100183	163101183	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11082.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	3.46436476629155	3.58691615235718	3.38721296761419	3.12832002775096	2.95942948363114	3.2298688145816	-1.63838593709284	0.0121555863654812	0.115250915029508
Merged-chr18-34504071-1	chr18	34503571	34504571	+	747.0	f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	MTD|LTR|ERVL-MaLR	2752.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	4.52105462522591	4.57451020615232	4.62521588191698	4.45405245656178	4.63386064145047	4.69093053309578	0.0576113132802869	0.890129394417257	0.974435746433595
Merged-chr8-68195603-4	chr8	68195041	68196041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80987.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	7.29923322795314	7.25893373577193	6.95733899966732	7.03716792163118	7.15572962778927	7.18646527891918	-0.0937665662996158	0.704903137578218	0.922601256634819
Merged-chr5-130845776-3	chr5	130845232	130846232	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	396940.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.54359312261837	3.67473260864834	3.5282883159548	3.43730771151208	3.23200437533966	3.43378047202839	-0.836407445991933	0.157116806678556	0.528089160208
Merged-chr2-89117473-4	chr2	89116973	89117973	+	991.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4963.0	NM_146902	258904.0	Mm.330377	NM_146902	ENSMUSG00000075102	Olfr1221	MOR233-3	olfactory receptor 1221	protein-coding	4.12005468532261	3.9584824744918	3.89734877503539	3.60965900840842	3.54327068939026	3.8675102092647	-1.06834282396246	0.0480772131706392	0.278018538710303
Merged-chr16-92671614-3	chr16	92671114	92672114	+	862.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	25715.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.32784798263931	3.29859250386027	3.33219175083306	3.43220713938993	3.23062770348377	3.56252808947824	0.347111203404162	0.568218704293267	0.868531823304055
Merged-chr7-19240007-2	chr7	19239507	19240507	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	B3|SINE|B2	11618.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	2.28657658161596	2.25357754114255	2.339655620336	2.34490238967002	2.21507049788935	2.47739687388378	0.350987312997844	0.676271419375186	1
Merged-chr2-49416322-1	chr2	49415822	49416822	+	544.0	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-35164.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.85457143646322	4.66734473988678	5.11239018165408	4.94281595917321	4.72780804383986	5.23609261201469	0.203775154288823	0.625646500684662	0.892533372691366
Merged-chr5-140643063-2	chr5	140642563	140643563	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	RSINE1|SINE|B4	5968.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	6.00090668648618	6.50069875292525	6.5596252259169	6.69156390453466	6.56413259378606	6.53361882559232	0.366262079521204	0.220468935898301	0.614998129948232
Merged-chr11-20107008-2	chr11	20106508	20107508	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5943.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	5.65003470434141	5.61467921404488	5.45465181518566	6.08798378594584	6.14944531597219	6.23398435806814	1.01170821818937	0.000877758337529469	0.0162882506131026
Merged-chr4-130821130-3	chr4	130820637	130821637	+	730.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28600.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.53464481852001	4.60478610866226	4.67972485461307	4.63876538381739	4.40754190034798	4.78230391451314	0.00685765920129078	0.987130423757715	0.997161899445921
Merged-chr7-75638942-4	chr7	75638443	75639443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	183409.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.75619858805434	5.80889417976139	5.06535564421033	4.58536286328864	4.2918584613307	4.54112295896526	-2.4706825737509	1.29505839388432e-08	1.14030919405636e-06
Merged-chr2-122572033-4	chr2	122571534	122572534	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39243.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.62972842696024	6.54087449937366	6.3334114042374	6.32686543500378	6.69091061627951	6.18055406596139	-0.130049350535518	0.663607547025222	0.907297207161427
Merged-chr1-138964143-3	chr1	138963643	138964643	+	984.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	434.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	7.59762302890426	7.44828188872081	7.29629082111999	7.80268149671368	7.37279121677639	7.22010751945701	0.053944776598203	0.840507377716678	0.962819298477451
Merged-chr3-142616917-2	chr3	142616417	142617417	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 10 of 10)	PB1D11|SINE|Alu	-3746.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	2.70411182469865	2.59840836927767	2.64162793671502	2.91468657609883	2.72300077537874	2.90283783961527	1.04866194319931	0.157043137370171	0.527969510072615
Merged-chr1-71103692-3	chr1	71103205	71104205	+	947.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-733.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	5.98009278286903	6.49077529507723	6.01855969611594	6.41377149639606	6.87306809590262	5.89982108877769	0.455488040902264	0.220867347154411	0.615590183533568
Merged-chr11-53314924-2	chr11	53314424	53315424	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER92C|LTR|ERV1	-9765.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	3.15044698707407	3.2126010836252	3.2376937523095	3.3415489672493	3.21559269510529	3.30918709294451	0.365223822332399	0.553891916281294	0.862575362378324
Merged-chr4-53116055-4	chr4	53115548	53116548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43847.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.66930021650411	6.70439153687759	7.13267002519955	7.59645185308581	7.68174831840681	7.24082450415493	0.421485445009562	0.195766172424904	0.583438527663774
Merged-chr4-3778583-2	chr4	3778083	3779083	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57072.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.53251212718273	3.33444763691054	3.61869781678454	3.38188721620061	3.18554795253925	3.68778375684338	-0.262825058197469	0.673779277474776	0.91163657550036
Merged-chr19-55660341-4	chr19	55659835	55660835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41869.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.36461267501913	6.99466578274583	7.0614381970017	6.94042547067866	7.08191114974398	6.95629870055829	-0.236578806223452	0.354724377559609	0.741848255752265
Merged-chr11-69428959-4	chr11	69428446	69429446	+	869.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-15271.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.78559759885717	5.46428421944037	6.05660538613476	5.54145320641636	5.91029196035653	6.17616906481248	0.203887091414417	0.574089387622232	0.870523174873875
Merged-chr8-124278549-1	chr8	124278049	124279049	+	619.5	f0_balb.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	47155.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	3.25805998936589	3.11828049599442	2.96943196122824	2.67756154275629	2.46704408881881	2.98303830103397	-2.13665710416747	0.014261030768205	0.128340022513606
Merged-chr10-34176258-3	chr10	34175785	34176785	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	31266.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.27316509022577	5.62117271557292	5.65411768834734	5.47572028599226	5.50988333985067	5.52653893638687	-0.0355537602721042	0.916563973061346	0.981312252061916
Merged-chr3-158061715-4	chr3	158061245	158062245	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25063.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	6.64021317160222	6.75644580827911	6.45777034854062	6.87351106112324	7.20611535071542	6.87072133346949	0.573420025799283	0.0340993582639678	0.225902818664668
Merged-chr4-122924024-4	chr4	122923511	122924511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37177.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	4.87538567826695	4.72526219313547	5.10294493743433	4.41492583706932	4.65083717563152	5.0406790203994	-0.418943059888489	0.339558152010594	0.729313720985741
Merged-chr1-79683131-2	chr1	79682631	79683631	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-11159.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	2.91608848887922	3.19520976552578	3.37239105528802	3.59664910877362	3.37339376102255	3.60200524011973	1.4198745615045	0.0326819708170022	0.220087522478239
Merged-chr12-85351170-2	chr12	85350670	85351670	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 2 of 4)	intron (NM_026775, intron 2 of 4)	-11808.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	4.03167716636028	4.20221762951046	4.41086291342846	4.01389907576832	4.24000884785035	4.62199061854142	0.249899036407063	0.621258519949585	0.890625390716465
Merged-chr6-129548244-4	chr6	129547787	129548787	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-15003.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	3.22586391509708	3.63326013763065	3.83603420676992	3.41209812337458	3.31865927330613	3.56496198678279	-0.553053376493094	0.379999658476162	0.762271253193937
Merged-chr6-82770670-2	chr6	82770170	82771170	+	888.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	ID_B1|SINE|B4	3784.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.32473012546261	4.19201416950635	4.1618992775279	5.32854354634047	5.29993923870981	4.87918933802005	2.26876439852083	2.3688210229623e-07	1.52204524848376e-05
Merged-chr4-115831475-2	chr4	115830975	115831975	+	750.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_175308, exon 2 of 4)	exon (NM_175308, exon 2 of 4)	3383.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	4.6708414872673	4.80027632446394	5.05453337093838	4.55963596718577	4.64663223152122	5.20802368850915	-0.0417800110265886	0.924992032793853	0.983085374624298
Merged-chr16-93684534-1	chr16	93684034	93685034	+	622.0	f1_balb.idr	intron (NM_173047, intron 1 of 2)	intron (NM_173047, intron 1 of 2)	1315.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	4.30197100111841	4.6301510950562	4.49746773763324	4.36390726271938	4.36449648085834	4.15460915345804	-0.463684226373827	0.310691765016746	0.706022433069834
Merged-chr7-100506159-2	chr7	100505659	100506659	+	817.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 5 of 8)	exon (NM_153527, exon 5 of 8)	8656.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	3.86145517697628	3.85853821049033	4.19794200771208	4.74670058037396	4.62911776181705	4.72387899003665	1.98517432588478	2.59356413753629e-05	0.00091133988494983
Merged-chr1-39847256-4	chr1	39846760	39847760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040465)	promoter-TSS (NR_040465)	70.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	4.22111277200872	3.72529047144741	4.08088943300541	4.08934193394465	3.78332136507185	3.85357815194096	-0.331269046321593	0.53989182704863	0.856187827956744
Merged-chr2-148522251-4	chr2	148521739	148522739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78704.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.89033413192927	6.8661325088963	6.99920536380665	6.8116143740119	6.81745376085773	6.58648271206756	-0.256310836297061	0.310667307720617	0.70601423883807
Merged-chr5-117358459-2	chr5	117357959	117358959	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	1154.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	6.49477916655893	6.60072741382093	6.39725227092709	6.29795174525555	6.36808469949	6.10080938127205	-0.384351202300512	0.165930335924987	0.541089092560861
Merged-chr17-24351969-4	chr17	24351474	24352474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-49.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	7.14550710269251	7.53344352715561	7.34765063225276	7.05224258427954	7.15557177925403	6.92885173081368	-0.4468648127261	0.0780530075065821	0.368845675182172
Merged-chr19-38011562-4	chr19	38011057	38012057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32020.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.70854730120093	6.75263945415898	6.6051654519646	6.42593577891515	6.35971491300437	6.43448043525823	-0.467737450919138	0.0711024294536245	0.349821902773212
Merged-chr13-37797775-2	chr13	37797273	37798273	+	644.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28265.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.64006109960185	3.52128541439306	3.85619011169344	3.80142111711923	3.72699406225694	4.10526984494215	0.676728432959682	0.221663758542088	0.616471072588325
Merged-chr18-10533772-4	chr18	10533280	10534280	+	800.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	76572.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	5.0784793048284	5.04423931564999	4.5743359706836	5.25649908071507	5.35102270805409	5.13111442927145	0.66803299343136	0.0945187562593966	0.409808010249239
Merged-chr10-53379877-4	chr10	53379376	53380376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204983)	promoter-TSS (NM_001204983)	-25.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	7.17839959260854	7.46616556929197	7.21070735062894	7.50381702154779	7.24198398161265	7.26822333574957	0.0707599307747434	0.774670702384091	0.944493464665915
Merged-chr3-88623548-4	chr3	88623039	88624039	+	859.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2145.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.49511948826736	5.97521424926886	6.64439215361651	6.32977602089175	6.07480416242406	6.28998272621835	-0.269619178459941	0.402264311310994	0.77788018095416
Merged-chr5-34278257-2	chr5	34277757	34278757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	MTD|LTR|ERVL-MaLR	10067.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	2.97653241363171	2.67491489450438	3.01094805208586	2.86376860381028	2.80812959215688	3.02550502709294	0.0252328826141887	0.972162960408762	0.993868590220018
Merged-chr9-70257670-4	chr9	70257165	70258165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	50315.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	6.85521518223805	7.24789481357684	6.50617462450309	6.06203924530792	6.26472255428315	5.86742208507365	-1.33323606181183	4.38265890294393e-05	0.00141455501162203
Merged-chr19-32389675-4	chr19	32389168	32390168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033198, intron 1 of 1)	CpG-7452	452.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	6.10297544329634	5.92263493280319	5.981226670721	5.85706283959156	5.65245036294008	5.82668552602121	-0.407608145093845	0.178508657860728	0.559785497975258
Merged-chr15-9074954-3	chr15	9074457	9075457	+	681.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	3697.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	2.45445345219512	2.50559883407127	2.56700019566248	2.39618450958344	2.24976729548271	2.4517848983449	-0.928321866143472	0.260966575994704	1
Merged-chr6-34966346-4	chr6	34965847	34966847	+	918.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	11652.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	4.7658854114574	5.09208854889941	4.65426619983635	4.48718483984759	4.51863573087058	4.6388522796656	-0.740450204700159	0.0798146952100134	0.373590494619515
Merged-chr10-86947731-3	chr10	86947232	86948232	+	980.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	60210.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	3.54179143789384	3.14322060434832	3.64344741651846	3.26484615483399	2.99251975578952	3.5651353475569	-0.636798813622624	0.355015221571042	0.742027293556475
Merged-chr13-99317595-1	chr13	99317095	99318095	+	598.0	f0_balb.idr	Intergenic	Intergenic	27083.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	3.19938629346185	3.13953540287827	3.04223101777386	3.00775525050033	2.83434892093572	3.22986497293828	-0.471130735565538	0.492657806794932	0.831177181177099
Merged-chr7-4653345-2	chr7	4652845	4653845	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	5605.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	6.41136505825755	6.49900707022593	6.6258094209326	6.82012090781768	6.55837011179438	6.43879577020342	0.176212937002539	0.521320821957894	0.846963116086231
Merged-chr13-42049238-1	chr13	42048738	42049738	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-2783.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	6.83836926090731	6.58668006289979	6.80723728862154	7.05821147318175	6.82970061208336	7.07076867423522	0.370279443802514	0.15253434406602	0.520664753545154
Merged-chr4-112256202-3	chr4	112255705	112256705	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177578, intron 4 of 7)	MTD|LTR|ERVL-MaLR	23960.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	2.61995644984131	2.59626719813063	2.77922780291925	3.60111705279511	3.41961921984681	3.62719656577322	6.97164424959191	6.65740054848281e-08	4.95039307272705e-06
Merged-chr12-84611789-2	chr12	84611289	84612289	+	787.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 6 of 18)	intron (NM_008992, intron 6 of 18)	5677.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	3.51018220428103	3.57257214243294	4.03051482677474	3.31030677940205	3.46644535357631	3.36108802657336	-1.19303003930249	0.0543112219758914	0.299319655462311
Merged-chr11-80167475-2	chr11	80166975	80167975	+	881.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	B1_Mm|SINE|Alu	13313.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.61567675578226	5.40979229801935	6.02430676708834	5.66227011857341	5.76812714935126	6.04287949404675	0.239271277534091	0.49661380791614	0.833150692063167
Merged-chr13-54306650-2	chr13	54306150	54307150	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-64699.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	3.26212178958898	3.23600098642091	3.1092606025126	3.43086960432564	3.37212796304445	3.47223280238156	0.855365757138661	0.164932544607551	0.539617077326343
Merged-chr8-90857092-4	chr8	90856606	90857606	+	866.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	28271.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.33407241179364	4.30305433057165	4.5327581491935	4.05496652862681	4.08790220994717	4.26929466097335	-0.68996729814613	0.137782641611135	0.496173735042596
Merged-chr8-83106192-2	chr8	83105698	83106698	+	792.333374	f0_balb.idr|f1_balb.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-59154.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	3.87199604044504	3.64968715725226	4.15511541611975	3.87505942964054	3.89196037739001	3.85192174332119	-0.0757834765799407	0.887681463978085	0.973836995667151
Merged-chr15-62037936-4	chr15	62037424	62038424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003368)	promoter-TSS (NR_003368)	-62.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.88884333046821	7.99360082219473	7.48657902080799	7.71264683948572	7.86207676328991	7.2251007832537	-0.253963749538427	0.367501073744572	0.752455260811988
Merged-chr3-37332356-4	chr3	37331868	37332868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16285.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	5.04872682723616	4.95340141080248	4.46826714155804	4.74349053555206	4.57722628640822	4.67082804534374	-0.452307475797776	0.29467850743563	0.691550351046476
Merged-chr8-57512461-3	chr8	57511966	57512966	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 1 of 4)	CpG	623.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	8.11196057647676	8.49663297456521	7.76814837183604	7.80102821536168	8.15937189721226	7.67540300731096	-0.375606679361519	0.184812619907211	0.568729926300499
Merged-chr14-47374550-4	chr14	47374030	47375030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	670.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	8.99466181983814	8.95625615814879	8.70911165026564	8.86825485596582	9.24906457446616	8.63980606481851	0.0771592385812289	0.753656982319358	0.938570691167124
Merged-chr4-149518779-2	chr4	149518279	149519279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	538.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	4.45616972006751	4.09785092595821	4.89643664141407	4.46685834168864	4.36606086255586	4.7582507180803	0.0468148833690953	0.925287285520692	0.983166193538686
Merged-chr1-17607360-3	chr1	17606843	17607843	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053191, intron 2 of 5)	intron (NM_053191, intron 2 of 5)	5442.0	NM_053191	94227.0	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	2.99224889655872	3.30798547609881	3.39466688912868	2.98659348959594	3.09009640587964	3.25117700405642	-0.547645373796861	0.415382429616999	0.786402808010238
Merged-chr18-61211667-4	chr18	61211200	61212200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007885)	promoter-TSS (NM_007885)	-104.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	7.57404586022903	7.64700703598614	7.48116710305152	7.53806939426716	7.86696542372252	7.40968032245787	0.0838683679328233	0.733379196796406	0.932052212786391
Merged-chr16-35770343-4	chr16	35769829	35770829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-57.0	NR_152314	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	8.18017024474324	8.38674341121027	7.9997663619792	7.94072251254777	8.219744791579	7.58890318175524	-0.353554987747799	0.179262667888434	0.560780311857825
Merged-chr2-35201114-4	chr2	35200611	35201611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026697)	promoter-TSS (NM_026697)	9.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	7.41519289628494	7.40146453184536	7.36248671466043	7.36144857328183	7.40447894862417	7.02352734649107	-0.162839153533788	0.50309292416487	0.836767423966136
Merged-chr7-88271691-4	chr7	88271203	88272203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6382.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.09080275933828	7.03623380307594	6.90384048341381	6.86077153701699	7.00378271742926	6.90430521258139	-0.1377255417097	0.57287027469635	0.869934493236159
Merged-chr9-110890854-2	chr9	110890353	110891353	+	667.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146228, exon 15 of 27)	exon (NM_146228, exon 15 of 27)	10531.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	1.77183480011383	1.7443038248027	1.97047468455141	1.64708871988745	1.6468058904446	1.77868787109683	-1.33685857455615	0.204724776048806	1
Merged-chr2-90476447-2	chr2	90475947	90476947	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2727.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.1297853528945	4.02914853360937	4.13650251125224	4.09034342775297	4.03022045058469	4.20412413832665	0.0201425840849466	0.966274394408904	0.992284576568462
Merged-chr2-25587957-4	chr2	25587450	25588450	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 8 of 14)	intron (NM_001024616, intron 8 of 14)	-7851.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	6.56056146370994	6.6222918822937	6.09018212073591	6.16014858255123	6.17878854003153	5.76130908513656	-0.660101388177253	0.0404816474862495	0.250746637278681
Merged-chr15-95820385-2	chr15	95819885	95820885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	RMER17B|LTR|ERVK	9687.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.14394619357105	5.12532771996055	5.45038205391655	5.33854498429147	5.04576387789948	5.51239464459275	0.125713456964554	0.737528412781008	0.933775317218453
Merged-chr9-41153075-4	chr9	41152570	41153570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	4992.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.19671732628473	6.13162808228063	5.69800791927982	6.41161105438724	6.26633896071672	6.29095064442574	0.473208699702059	0.123234790160167	0.469683053300071
Merged-chr13-81712021-2	chr13	81711521	81712521	+	798.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	604.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	4.24133192483494	4.20967080808648	4.12080054801741	3.81894354716387	3.81407018837304	4.27701121869787	-0.634404684973928	0.215444418309115	0.608899282194137
Merged-chr19-61265510-4	chr19	61265018	61266018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37100.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.73093332445979	6.27350229055683	6.04461968985697	5.78361070686891	6.31984703949766	6.01484044940673	0.0499552557600959	0.883922275439139	0.973466734537782
Merged-chr10-128536478-4	chr10	128535969	128536969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10610.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	6.22355087032551	6.00066701522359	6.24341923659458	6.03982928334206	6.20134121807452	5.92851722042437	-0.143775174112113	0.627561510268025	0.893330206932885
Merged-chr17-28528178-4	chr17	28527677	28528677	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2684.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	3.07432107452102	2.90890335079271	3.08034883150217	2.96539810390819	2.65131584112802	2.78871104537834	-1.07190101382726	0.143157322525625	0.505025824429211
Merged-chr1-34467719-4	chr1	34467184	34468184	+	970.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	C-rich|Low_complexity|Low_complexity	7938.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.88449184481969	5.70059690370659	5.29926173340169	5.76771032731546	6.02607045400698	5.8890650216551	0.424858741805145	0.215753132762945	0.609112973600893
Merged-chr1-144301694-4	chr1	144301184	144302184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-52580.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.22623767574999	4.13922669073867	3.91777956661914	4.17394196879656	3.76741744446388	3.77057244447591	-0.551375183701684	0.299227308404164	0.695964214930834
Merged-chr1-185497509-2	chr1	185497009	185498009	+	813.599976	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033600, exon 1 of 1)	non-coding (NR_033600, exon 1 of 1)	203.0	NR_033600	114668.0	Mm.379303	NR_033600	ENSMUSG00000102185	5033404E19Rik	-	NSA2 ribosome biogenesis homolog pseudogene	pseudo	2.50901642433868	2.68595008508727	2.69905267851172	2.36702429013737	2.57459452834006	2.71157273878249	-0.433834898993564	0.590321788959867	1
Merged-chr2-23036922-2	chr2	23036422	23037422	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	B3A|SINE|B2	3319.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.04059171645728	4.10592273150091	4.35822848690415	4.14010740944272	4.10571270925564	4.65171250561899	0.390448419754574	0.43727232907895	0.799853941788153
Merged-chr10-80899843-2	chr10	80899343	80900343	+	843.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081688)	TTS (NM_001081688)	1126.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	4.01837266599183	4.1428910919856	3.72308839694702	4.13826578696124	4.12240603779839	4.06238003361749	0.363866357834416	0.477704288446142	0.82334367205141
Merged-chr13-56014206-2	chr13	56013706	56014706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	121344.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	4.08782824572949	4.00637773989297	4.64926444836196	3.87012032891284	3.6159218521108	4.42779541397472	-0.72490056847195	0.223365139877738	0.618087468987021
Merged-chr16-27385268-3	chr16	27384742	27385742	+	760.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3714.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	4.0192727161171	4.13979335650701	3.96861132438878	4.11584567169397	3.76773598897392	3.98849103163412	-0.263360683192929	0.604421624946451	0.883087471133857
Merged-chr6-48829820-4	chr6	48829311	48830311	+	880.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11177.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	5.15142963880033	5.14663626946606	5.53713539835377	5.40284765658022	5.18471456788949	5.28288115657584	0.0244880249130061	0.946313391187121	0.987965428530715
Merged-chr11-4833189-4	chr11	4832668	4833668	+	916.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-33.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	5.1130995895566	5.05048655429826	4.84256913913568	5.12787932744581	5.3307359834579	5.38664804656736	0.553076318104079	0.13358447386195	0.488819290786001
Merged-chr18-23807805-4	chr18	23807313	23808313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3843.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	8.0744195432329	8.06444404940153	7.43105910827865	7.96927640894778	8.14090440178346	7.82356839315333	0.126074493285874	0.640625781060703	0.898526347210755
Merged-chr9-101251758-4	chr9	101251227	101252227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001161362, exon 1 of 14)	5' UTR (NM_001161362, exon 1 of 14)	105.0	NM_001161362	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	6.60943916148871	6.54742027470699	6.73930998394168	6.55337830394477	6.12657095643122	6.4342778286486	-0.409255652943996	0.148974700664179	0.51505741857585
Merged-chr4-58585560-4	chr4	58585075	58586075	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32084.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.71039034058021	4.80192418806795	4.30564068214775	4.50266128805593	4.51121447450666	4.55757324321365	-0.275806264030016	0.53235370733904	0.851971173271146
Merged-chr10-79883884-4	chr10	79883381	79884381	+	956.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011178)	TTS (NM_011178)	-2431.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	5.90915033569203	5.81490633412505	5.91269387051646	6.01177588336666	6.04008717340646	5.95011329440474	0.223484966352065	0.444439588062268	0.804198524737369
Merged-chr17-27897255-3	chr17	27896775	27897775	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	11967.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	4.04690307049552	4.13553508471992	4.51553327255112	6.84967444026597	7.1899325371276	6.67939376760219	6.58699156354665	8.70402545579941e-27	1.95741770304367e-23
Merged-chr1-74286908-2	chr1	74286408	74287408	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	1874.0	NM_001039509	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	2.24901161731245	2.24940354489998	2.48658957776739	2.20685191206172	2.14636015047035	2.30968983128012	-0.753922003630555	0.385026926159693	1
Merged-chr5-139018409-2	chr5	139017909	139018909	+	978.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-23456.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	7.15830555393555	7.23367371946915	7.17962346014143	7.22316247152754	7.21370130912901	6.93049229523748	-0.0808976164813852	0.738689197089151	0.934073685263499
Merged-chr4-136136271-2	chr4	136135771	136136771	+	652.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7551.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.30468896772163	3.24569584399823	3.24549044771893	3.10157411031499	3.15249037507523	3.47591353022314	-0.0827878414263225	0.896671148473456	0.975845415359997
Merged-chr7-121072198-2	chr7	121071698	121072698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	2332.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	6.28836241732615	6.55782713985569	6.66250345985272	6.20850264971295	6.19642667083815	6.38446278114795	-0.404759496792579	0.154095571084342	0.523241150332653
Merged-chr11-77686051-4	chr11	77685561	77686561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024205)	promoter-TSS (NM_001024205)	-78.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	7.21396300632425	6.69889131373849	7.17030118429387	7.26132882176945	7.01604967003811	7.02607299351857	0.0934262410225467	0.735019914333172	0.932617455907478
Merged-chr3-88607065-4	chr3	88606550	88607550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9157.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.50882907735861	6.00100601547035	5.70462130271468	5.95349242713571	5.86644290931417	5.5891459433031	-0.534960517454005	0.138131994811788	0.496852419673161
Merged-chr10-80401106-3	chr10	80400591	80401591	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1560.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	5.26193844110493	5.0579950734352	5.9569585860284	5.55715594264784	5.57089055027162	5.75029321332424	0.286564666160165	0.47652437908179	0.82257619929543
Merged-chr6-71476850-3	chr6	71476332	71477332	+	739.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17045.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	3.8018513411708	3.50647257306545	3.75407441038817	4.05810283367973	3.62034369002967	3.489206177716	0.186034381779082	0.7535880191914	0.938563718495545
Merged-chr11-62553266-2	chr11	62552762	62553762	+	732.0	f0_balb.idr|f0_c57.idr	TTS (NR_002875)	TTS (NR_002875)	1531.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	5.35752659999744	4.98871140936244	4.90646794841275	4.96083435795408	5.01304469528291	5.04597086033269	-0.21742896830538	0.57365085807437	0.870251558775855
Merged-chr9-71896094-4	chr9	71895612	71896612	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-16.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.71398667186759	6.92602230212199	6.3798770384982	6.94328571491493	7.30593248683891	6.28799815447734	0.348496078177175	0.321783158506421	0.715218854925801
Merged-chr11-101448405-4	chr11	101447897	101448897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-15.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	6.33050371659057	6.70128664946268	6.7432882975369	6.76041314632239	7.04645647156752	6.846667621316	0.461720387561385	0.0960454033055595	0.413202312096013
Merged-chr17-33563305-4	chr17	33562815	33563815	+	913.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	7608.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	6.76498552498388	7.05884359350595	7.13742006717621	6.94467444425476	7.26999945224051	7.45456551599624	0.368367826359403	0.178268775011441	0.559389924835031
Merged-chr18-77758535-3	chr18	77758034	77759034	+	859.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357531, intron 9 of 10)	intron (NM_001357531, intron 9 of 10)	9265.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	3.01833611544682	3.03956236898708	3.31781592412912	3.10712123679995	3.41141759934315	3.33430781654467	0.701846335032357	0.284590345649722	0.682326259254607
Merged-chr14-55605427-1	chr14	55604927	55605927	+	1000.0	f1_balb.idr	intron (NM_001159418, intron 2 of 8)	B2_Mm2|SINE|B2	848.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	5.08693160995676	5.07823752319414	4.91507951091292	5.01636211845497	5.24266159515028	5.01816590312183	0.147883593863029	0.690817026645185	0.917985581441023
Merged-chr10-80617411-2	chr10	80616911	80617911	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5369.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	2.84936252710074	2.80263437017929	2.79230102651002	2.82822243992682	2.72027262871128	3.09928420616233	0.343935060276233	0.634378026209868	0.896341969659052
Merged-chr9-96416564-4	chr9	96416062	96417062	+	942.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52131.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.28367665709523	3.23019073235136	3.25763724146003	3.33932874931655	3.55975826573405	3.38728105449622	0.709374047728017	0.241842217167768	0.638862793574907
Merged-chr10-13501138-4	chr10	13500641	13501641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330198, exon 1 of 8)	5' UTR (NM_001330198, exon 1 of 8)	113.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	8.34868412150554	8.64921708446873	8.05773203372017	8.29858727205225	8.42200826550462	7.94961469780891	-0.190450056619036	0.466727117149965	0.817646675637448
Merged-chr7-45462062-2	chr7	45461566	45462566	+	867.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 5 of 5)	PB1D10|SINE|Alu	-2180.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	4.98683336135327	5.14943289667277	5.38664993385799	4.82973642111539	5.07530590213495	5.47565348497158	-0.0662616086659449	0.869684771809176	0.969867590000374
Merged-chr3-95230475-4	chr3	95229977	95230977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1534.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	7.4220879475598	7.53268460370356	7.56263691417951	7.73614278815031	7.97652031183779	7.68500891521503	0.444315665537711	0.0525144046373133	0.293085960229497
Merged-chr11-78267991-4	chr11	78267476	78268476	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 11 of 38)	intron (NM_001002004, intron 11 of 38)	6222.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	4.24405995543404	4.41450178777101	4.44251534526202	4.43631760206066	4.35165181788766	4.28996103830687	-0.0101660777320259	0.981756075074672	0.99582830941535
Merged-chr6-72347584-6	chr6	72347069	72348069	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026696, intron 1 of 3)	CpG	252.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	8.27929419242247	8.78054818541389	8.54694575173935	8.58817463101064	8.69350189981823	8.50123806881815	0.0622927169323699	0.78823886163426	0.948908830222811
Merged-chr8-120571357-1	chr8	120570857	120571857	+	563.0	f1_balb.idr	intron (NM_001145896, intron 9 of 15)	intron (NM_001145896, intron 9 of 15)	17718.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	2.26974339132095	2.37422453878235	2.49413056186873	2.31929793895734	2.06116704468986	2.56813357655564	-0.311824856728245	0.73470769735341	1
Merged-chr10-80738926-2	chr10	80738426	80739426	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	B2_Mm2|SINE|B2	3349.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	3.42444202652842	3.5803341106557	3.81178956858586	3.59659236659914	3.43013508257972	3.68575580573505	-0.136785796569014	0.813600687943632	0.955940138311315
Merged-chr4-147867803-3	chr4	147867300	147868300	+	840.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025365, intron 1 of 9)	RMER15|LTR|ERVL	919.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	5.25830420993233	5.59918937387888	5.84353238941247	6.03846019666736	5.7829071631304	5.64953854515959	0.471963143756759	0.179591314553188	0.56110368604883
Merged-chr10-25367535-2	chr10	25367035	25368035	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	ID_B1|SINE|B4	7737.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.36060679256027	5.35909568394002	5.67400997727497	5.36305531556715	5.44171943757009	4.95092437338294	-0.353819870516461	0.344914745624801	0.733406576560064
Merged-chr1-165639741-4	chr1	165639235	165640235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5194.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.08499706613807	5.87368519746551	6.14513146223595	5.8834855668443	6.18462649510139	6.20523860224503	0.112085843937275	0.711385762981244	0.924661173262022
Merged-chr2-138265631-2	chr2	138265131	138266131	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	9047.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	3.45825442209534	3.45068429761645	3.65707642195677	3.33281964269268	3.37506970524808	3.77369949667094	-0.0737859000511977	0.902484988640032	0.977534352809461
Merged-chr4-141713255-1	chr4	141712755	141713755	+	557.0	f1_balb.idr	intron (NM_001017966, intron 2 of 9)	intron (NM_001017966, intron 2 of 9)	10164.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	3.84214547610672	3.31926680109041	3.52072703852118	3.20363941748623	3.11581226271157	3.37120072406565	-1.3827149033297	0.0326978650332158	0.220160825481954
Merged-chr3-31391945-2	chr3	31391445	31392445	+	962.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-81626.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.97374418703351	2.89668866330297	3.0481507191074	3.00051019241904	3.02009486574342	3.11986681920595	0.344910759510019	0.604320760883223	0.883029381406957
Merged-chr10-57835283-4	chr10	57834812	57835812	+	912.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40768.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.85699291066582	5.75188103654745	5.80811124806921	5.47634236144786	5.71365592576733	5.71741651202331	-0.300594091891284	0.339156899314967	0.729057813336113
Merged-chr11-83583546-2	chr11	83583046	83584046	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	1485.0	NR_036452	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	1.89635931658834	1.96630146823019	2.09381112959094	1.83304160032064	1.86773022316863	1.76101815730714	-1.40433055454832	0.170901934039282	1
Merged-chr13-97208280-4	chr13	97207760	97208760	+	876.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9903.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	4.56505155114789	4.56666673346309	4.85643886866975	4.6702276080583	4.53383495183731	4.77859910283047	-0.0076131209912495	0.985497317604848	0.996904015210561
Merged-chr13-37249724-3	chr13	37249204	37250204	+	822.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95641.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.44566028390443	3.47556837526312	3.3427097457294	3.28414658863509	3.47358428727352	3.23760044980897	-0.316987445104248	0.604201653822732	0.883003945319161
Merged-chr8-126936146-3	chr8	126935628	126936628	+	883.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 4 of 4)	B2_Mm2|SINE|B2	9793.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	3.38293211917051	3.27105184509446	3.39207016554027	3.59452294960244	3.59433236622945	3.40688796268857	0.725317501123248	0.2174019843367	0.61125850891019
Merged-chr6-83868113-4	chr6	83867614	83868614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36373.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	3.87249236376191	3.86069250891014	3.80683295031249	3.93289688545224	3.58148883784312	3.60614172478331	-0.426912011934601	0.434207476184095	0.798241587091421
Merged-chr14-73117132-4	chr14	73116638	73117638	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25372.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.15277306460495	3.8652169752345	3.8804949024055	3.98585760329199	3.95060727231677	3.84601909494451	-0.137602807325373	0.788278547368929	0.948908830222811
Merged-chr1-171478101-2	chr1	171477581	171478581	+	730.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25397.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	2.6266363843643	2.23136503381302	2.47269929764523	2.25685785893702	2.10437435116579	2.29068010981867	-1.74300506315891	0.0618441484987494	1
Merged-chr6-38782892-4	chr6	38782398	38783398	+	724.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	54413.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.89963559156287	4.78286088403093	5.11085625724709	5.01789071975185	4.81206913419119	5.23593567547094	0.20076313188692	0.612646126977319	0.886885261037085
Merged-chr1-87850751-2	chr1	87850251	87851251	+	748.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-2536.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	4.09942095243946	4.11677804425532	4.29146558900444	3.81968121467445	3.8424370615938	3.95132206949354	-0.893519712337698	0.0720818883854654	0.352624479321406
Merged-chr9-57147023-2	chr9	57146523	57147523	+	781.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357409, exon 2 of 11)	exon (NM_001357409, exon 2 of 11)	1282.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	2.35256962034883	2.36706030225689	2.39108403717183	2.22559829460588	2.02182563956605	2.06060113372811	-2.05756453262559	0.0335415433067031	1
Merged-chr10-44268433-4	chr10	44267951	44268951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053069, exon 1 of 8)	5' UTR (NM_053069, exon 1 of 8)	112.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	7.16047060789484	7.49060386145107	7.0632174483554	7.0134694915157	7.30250202210432	7.04021724095472	-0.189741617397567	0.472790930268589	0.820550293768681
Merged-chr1-86359521-4	chr1	86359042	86360042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	-32.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	8.57137166975159	8.68492880670031	8.25441310984478	8.27460927616523	8.38927036571424	8.21809422496155	-0.311274940093383	0.167543195523429	0.543485018639177
Merged-chr7-68692907-4	chr7	68692416	68693416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56322.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	4.37809469857106	4.0816108434887	3.92259499211361	4.21664758546372	4.32908193654263	3.99457695706752	0.126637162959267	0.803297304048119	0.953447441859101
Merged-chr1-71735745-4	chr1	71735253	71736253	+	946.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82418.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	3.86517288164545	3.82178670998035	4.42074906501488	4.1732048619722	3.82797666052281	4.11331327560304	-0.0357136976486098	0.947854416592685	0.988008807662239
Merged-chr9-96362967-2	chr9	96362453	96363453	+	644.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	762.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.91991091471238	6.07078345370006	5.78589541382136	6.10187713431263	6.33140176632359	5.73796335345945	0.272092658922691	0.405415117444964	0.780134157220244
Merged-chr2-166974290-3	chr2	166973828	166974828	+	814.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-9611.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	6.74423431625822	6.75878527210592	6.48586768656898	6.73983223842384	7.05841228396385	6.30189968104717	0.122321389700208	0.693127112896027	0.918830576287622
Merged-chr18-61101579-1	chr18	61101079	61102079	+	571.0	f0_balb.idr	Intergenic	L1MB5|LINE|L1	-3993.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.60737372469147	3.46729969270813	3.64896205111001	3.54286291828875	3.56848050398188	3.56095210461185	-0.054223713908921	0.922901852757396	0.982621045978137
Merged-chr7-30587318-2	chr7	30586818	30587818	+	563.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001290573, exon 2 of 37)	exon (NM_001290573, exon 2 of 37)	1408.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	3.21942149787004	3.47593584008689	3.60303268195174	3.44861441152561	3.25270409382721	3.62228573348344	0.0188577192878031	0.975719874024915	0.994540154302743
Merged-chr8-53607665-2	chr8	53607168	53608168	+	818.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146208, intron 4 of 9)	MTB|LTR|ERVL-MaLR	31397.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	2.34560904643168	2.3530900569421	2.41385100039343	2.52712882216998	2.63132935053494	2.61641600223542	1.40351194241728	0.0826097876097964	1
Merged-chr11-8787820-4	chr11	8787317	8788317	+	964.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123282.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.35262003869633	2.31503755711544	2.45864526424288	2.24339193603863	2.24318137145057	2.27676948363976	-0.821632688405547	0.330445812311255	1
Merged-chr14-73334049-4	chr14	73333546	73334546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-8224.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	4.58785375868741	4.73718649770046	5.07316812717686	4.52423284978643	4.65840012526373	4.64599361180186	-0.448890635168808	0.29133361281199	0.689044861000541
Merged-chr14-20393635-4	chr14	20393152	20394152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155747)	promoter-TSS (NR_155747)	-18.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	6.11053518333733	6.01908838651075	6.48736532980823	6.18434314108301	6.2757323014671	6.25543493506484	0.0520973544108535	0.861328208051841	0.96779377844034
Merged-chr13-44482885-4	chr13	44482396	44483396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	43169.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.89960860552616	4.98475984557544	4.67785391209823	5.0126324992912	5.35387339507682	5.12816718972923	0.658125154302716	0.0913659398987007	0.40231662482196
Merged-chr2-180043879-4	chr2	180043378	180044378	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1395.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	4.49316321154673	4.64211033384364	4.35540195123282	4.68742676196095	4.62710185127393	5.07106141345151	0.683596435267971	0.119485151707809	0.462083733545572
Merged-chr10-53596846-4	chr10	53596342	53597342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025541)	promoter-TSS (NM_025541)	-119.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	6.78022276204008	7.14247096822491	6.71840210939003	6.72239630528324	7.02350086504788	6.86996420513594	-0.0316753307163836	0.908212768388439	0.979210470127182
Merged-chr6-119396763-2	chr6	119396263	119397263	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	B1F1|SINE|Alu	-8029.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	4.52648297972791	4.43171394051319	4.52317106052723	4.22018210144233	4.0341423368237	4.09872756747631	-1.01402626030315	0.0265306702265971	0.193611998615567
Merged-chr9-85326138-4	chr9	85325640	85326640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160379, intron 2 of 2)	AT_rich|Low_complexity|Low_complexity	984.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	7.39593170380345	7.60364124840856	7.16082200459958	7.62227564348511	7.72530301509779	7.64324937812088	0.374264329241814	0.122796894909546	0.468851651063804
Merged-chr4-62499342-2	chr4	62498842	62499842	+	667.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_024257, exon 2 of 2)	exon (NM_024257, exon 2 of 2)	2858.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	2.6601257533291	2.37410824938432	2.69654563482937	2.13372710789184	2.26815800945652	2.18991432974956	-2.74895084627409	0.00707050232826879	1
Merged-chr4-126536664-4	chr4	126536149	126537149	+	903.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3191.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	5.82078419314541	6.08548992000178	5.93257964070166	5.70676290110263	6.03057227439227	6.0165376309752	-0.0445497072709272	0.886337409998705	0.973769270121239
Merged-chr11-120951025-4	chr11	120950535	120951535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038654, intron 1 of 4)	CpG	1968.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	2.89481553289686	2.61915967013758	2.52612295639106	2.69925239812892	2.54531654960024	2.85128426314568	0.0379406447435097	0.962006850195463	1
Merged-chr6-145306881-4	chr6	145306384	145307384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56332.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.55212334076534	8.7704324199285	8.11210227704475	8.15855002451423	8.00777727951076	7.93962404750032	-0.663700958538475	0.00862385531208437	0.0909126761444211
Merged-chr4-141078377-4	chr4	141077893	141078893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-36.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	7.2221306245549	7.63222486290014	7.31745317309373	7.53348731733472	7.44317935954819	7.16938366157475	-0.0153432751086649	0.952727456898048	0.989274422979734
Merged-chr3-88150181-1	chr3	88149681	88150681	+	551.0	f1_balb.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	7809.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	4.83009054155233	4.82803119865144	4.88074126473862	4.93933194228975	4.82879681451077	4.94569425108409	0.127020960342179	0.738474863886735	0.934032187674406
Merged-chr4-101694706-4	chr4	101694187	101695187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22720.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	6.04540380258523	6.02678996018732	6.30997445087366	6.04932895167495	5.95749101422181	6.38742764963153	0.0126159387979326	0.967280552579553	0.992555129128888
Merged-chr7-27356085-4	chr7	27355584	27356584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138676)	promoter-TSS (NM_138676)	-76.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	7.26243049716333	7.62449085886641	7.42111179089769	7.76338289492245	7.98234288816318	7.89557636090519	0.633360764089274	0.00767742904455499	0.0835281793853729
Merged-chr13-42866388-3	chr13	42865891	42866891	+	927.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001302636, exon 1 of 13)	5' UTR (NM_001302636, exon 1 of 13)	144.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	6.14661430088858	6.33798560911914	6.28245501232045	6.14681960903071	6.07886274735567	6.18067559447358	-0.211640852496701	0.450409580792624	0.80835322128837
Merged-chr19-11404665-4	chr19	11404155	11405155	+	827.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	4.72460478529218	4.81167774559269	5.15536960594735	5.11759538940638	5.13436090118865	5.05480496811024	0.449295066314017	0.244046492674957	0.641229541844635
Merged-chr6-57571789-4	chr6	57571323	57572323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-9169.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	4.61487523230905	4.65048941424438	4.60889197497137	4.77534780545716	4.71246082064791	5.16567288719491	0.601195494057457	0.148309779319966	0.513822363663956
Merged-chr1-131094627-3	chr1	131094119	131095119	+	704.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	MIR3|SINE|MIR	3224.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.36781962047922	4.71097354726709	4.51122843403688	5.05979342081552	5.14116178997314	5.03850434940696	0.31891130449171	0.483917469243781	0.826584678003739
Merged-chr4-150909900-4	chr4	150909393	150910393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	28.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	6.9075745654036	6.72065835972585	7.04926825378601	6.99450627147275	6.9878761903177	6.91966930279181	0.119652091302431	0.634235310251207	0.896306748317281
Merged-chr3-127020258-4	chr3	127019688	127020688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 14 of 47)	intron (NM_001327938, intron 14 of 47)	-21736.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.30475837057214	2.95378670780036	3.21560299694726	3.24402902042547	3.23981014736809	3.34331766429877	0.451006469423352	0.487442207013854	0.828445729506224
Merged-chr6-28481994-2	chr6	28481495	28482495	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	1647.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	5.22834520010385	5.06313442701394	5.11910779736995	5.42737843271116	5.37072679204125	5.14926888489925	0.3825146566543	0.281222894091809	0.679363447090677
Merged-chr3-88491368-4	chr3	88490880	88491880	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1932.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.24668678675049	4.35124786313578	4.03805820238574	3.6485331866842	3.42118914015015	4.06002960253977	-1.54767833641554	0.00740877360025875	0.0814675077014231
Merged-chr18-4055718-4	chr18	4055232	4056232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4A|LTR|ERV1	-110100.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.13613789908414	4.61983898095919	4.94231690592605	4.85161206156027	4.57814649919906	4.68549051750011	0.255584549680577	0.594039464523443	0.878812974736718
Merged-chr5-73491930-6	chr5	73491444	73492444	+	992.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178896, intron 1 of 10)	CpG	918.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	5.73663989327209	5.8530963756128	5.74076523733158	6.3386607849198	6.18363746368655	6.2232247804185	0.808562075618902	0.00552265115205217	0.0657220762385522
Merged-chr3-79180368-2	chr3	79179868	79180868	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32551.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.07273702003305	5.87947074468563	6.01429350238999	7.21560833802646	7.47862135380567	6.76984416293042	1.92142350804311	1.62002854397674e-10	2.0706503085594e-08
Merged-chr16-4763465-2	chr16	4762965	4763965	+	560.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 2 of 5)	intron (NM_001357050, intron 2 of 5)	6519.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	3.22970142440318	3.30715402194915	3.42019377579253	3.20138214879891	3.18717436399497	3.27194383837398	-0.406655950102526	0.509634505959081	0.840448469395973
Merged-chr11-4193808-1	chr11	4193308	4194308	+	556.0	f1_balb.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	6975.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	4.64097320888603	4.2200584596001	3.95571335866481	4.32947350503023	4.22453251258489	4.32792469163648	-0.0575684072589014	0.909499358016258	0.979506123164556
Merged-chr7-27220213-4	chr7	27219701	27220701	+	924.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181593, intron 1 of 6)	intron (NM_181593, intron 1 of 6)	8396.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	4.08071428685062	4.05494601498462	3.96277489225972	4.6710912081111	4.63530766778586	4.38261979529553	1.435950789465	0.00200908976922031	0.0310729259325805
Merged-chr10-118868059-4	chr10	118867540	118868540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	CpG	863.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.54623488660867	8.41360980667911	8.06220891325902	8.49878602927585	8.49599750938322	8.5084810111602	0.190737968947396	0.401255924680624	0.77739831845081
Merged-chr11-99963081-3	chr11	99962584	99963584	+	865.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14609.0	NM_001085527	435286.0	Mm.457964	NM_001085527	ENSMUSG00000078255	Krtap9-5	-	keratin associated protein 9-5	protein-coding	2.81823634271911	2.98070136307028	2.86551935398379	2.98327438886988	2.96345253309861	2.99954517684353	0.426298767603182	0.534091725720458	0.852890344945839
Merged-chr2-128714840-2	chr2	128714340	128715340	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15925.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.38430259822802	7.11479322616859	7.36054240961042	7.28505730490954	7.72501512982896	7.06436094806926	0.1635524212412	0.559545653320622	0.864986578702902
Merged-chr9-80070981-2	chr9	80070481	80071481	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	4078.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	3.06937235288302	3.33552951982145	3.12673882886008	3.29290222671618	2.99597695387444	3.25771675165287	-0.00486019450337696	0.994139743839273	0.998918571480046
Merged-chr12-84111010-3	chr12	84110514	84111514	+	909.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3314.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	3.03290082929542	2.68439038382681	3.00663852306749	2.80436329206839	2.54366684248753	2.84291815105807	-0.937699562474214	0.223814877405871	0.618565816341582
Merged-chr11-83717242-4	chr11	83716754	83717754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8250.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	5.47852421155866	5.22593786886944	5.18313037558911	5.13000606501576	4.80324615101453	4.80297876626013	-0.805880339287322	0.0354152861348534	0.231015610591791
Merged-chr15-93387654-4	chr15	93387148	93388148	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347097, exon 7 of 8)	exon (NM_001347097, exon 7 of 8)	10686.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	4.97451496550799	5.13366072516291	4.89593943840054	4.90641687126006	4.90450809444966	4.59048964777864	-0.419983839609578	0.290868729390812	0.688664305177637
Merged-chr7-90030908-5	chr7	90030427	90031427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1768.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.86424999474559	7.84184652360176	7.67696617620328	7.76968919409639	8.20690256808627	7.61896061023726	0.144175327138809	0.574685622719789	0.870862343796639
Merged-chr7-113513235-2	chr7	113512735	113513735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-599.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	5.0019464967724	4.92468619506868	4.78388452750278	4.96442212918005	4.67253071086035	4.68771745764767	-0.292756593500785	0.463050894094131	0.815612590935319
Merged-chr6-34873967-2	chr6	34873467	34874467	+	675.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	4098.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	5.45554888596079	5.46168666886129	5.14269688245753	4.98990307586342	4.9632003508235	4.87205697841698	-0.879284259445264	0.0167480172027236	0.143539293824415
Merged-chr13-112752414-4	chr13	112751924	112752924	+	961.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48353.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.96569060889459	5.7477304979162	5.81504204892577	6.25347505242569	6.36187809024996	6.18102772719455	0.729877803494859	0.0124371109887898	0.117185724284365
Merged-chr7-102251515-2	chr7	102251015	102252015	+	881.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1397.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.15122753982955	5.37286915267652	5.47654866184206	5.07624413297713	5.06062878514811	5.18015869842776	-0.473445974558829	0.187018063270991	0.571917092105154
Merged-chr19-46609812-4	chr19	46609319	46610319	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	10713.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.56634521156705	5.57721210843736	5.78987776545019	7.0338417929917	6.83856946829745	6.34330372368804	1.90999061984671	1.5311869371401e-09	1.63133166025036e-07
Merged-chr13-52078738-4	chr13	52078226	52079226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18015.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.43269759453548	6.42211194776746	6.4636842648474	6.36689516498596	6.19036531268258	6.31760515414189	-0.244982108645447	0.363186011079062	0.748779246509244
Merged-chr6-51567465-3	chr6	51566957	51567957	+	857.2333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22164.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.69497088530435	3.83927043870073	3.66571367416891	3.56806836342785	3.42967990559157	3.73576695348095	-0.568351701970299	0.310884439498419	0.706141250833522
Merged-chr1-152720818-4	chr1	152720312	152721312	+	775.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-29739.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	3.31199483462707	2.91530871347836	3.10762647099993	3.18190252115451	2.73853328609922	3.23768764853896	-0.226870158274397	0.758899314806843	0.940311236380535
Merged-chr19-21782992-2	chr19	21782492	21783492	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	4652.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	2.71515271148478	3.05011078006549	3.00372332400916	3.00021775784298	2.76921068791142	3.18859233546411	0.284573951474534	0.697884163471275	0.920122930091722
Merged-chr4-128665284-2	chr4	128664784	128665784	+	732.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	MIRc|SINE|MIR	10582.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.95189629150713	4.73483152482023	5.23950087480945	4.87334519919893	4.42164538002017	5.09069671253607	-0.375527049131837	0.401517595991175	0.777579391314845
Merged-chr1-171366099-3	chr1	171365595	171366595	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	3.05677780727473	3.24414103677082	3.41969214605775	3.85385107248404	3.7395998518562	4.0403210703882	2.42497645318488	0.000139604731103228	0.00374475514688503
Merged-chr1-162547839-2	chr1	162547288	162548288	+	994.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	557.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	6.96534615948036	7.56324250307887	7.43998648981042	7.36241625990977	7.80515277734294	7.46622932664843	0.316842030545817	0.263401543337889	0.661383847170923
Merged-chr15-102075274-2	chr15	102074774	102075774	+	623.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145625, intron 1 of 14)	intron (NM_145625, intron 1 of 14)	1501.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	3.21255708425717	3.13229800584017	3.30663195045493	3.44534414448642	3.40578571759022	3.48751172325854	0.922007169636341	0.128206915790578	0.478850931371867
Merged-chr9-123850250-4	chr9	123849763	123850763	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	1398.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	6.51076734454785	6.51495211164017	6.60100057693092	6.4414172861545	6.73808791965321	6.17751211784979	-0.0819847263180411	0.778730872563902	0.945520893795831
Merged-chr6-87528593-2	chr6	87528093	87529093	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	4666.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.48479730268075	3.39488494163178	4.14952673046897	3.62286560261228	3.5450297591185	4.25448116751947	0.388465277545315	0.557429193518479	0.864233884258802
Merged-chr13-63140005-4	chr13	63139509	63140509	+	929.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-100020.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.35195766544424	5.4482336966789	4.6129204414528	5.06582121021349	4.5988858178704	4.81519012867598	-0.760940913441266	0.0955538748705235	0.412067728438793
Merged-chr4-3800893-2	chr4	3800393	3801393	+	769.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	34762.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.41452125020355	2.27448686606229	2.51580288350554	2.12169689553048	2.10313996197678	2.40404645087958	-1.33668355901972	0.142714672654064	1
Merged-chr7-79715762-4	chr7	79715229	79716229	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1543.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	4.89257307113234	4.8283850426003	5.49586863300501	4.99209785061991	4.95479946380483	5.48038883418546	0.122281426195898	0.778159285760728	0.945414788336538
Merged-chr11-115694621-2	chr11	115694121	115695121	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	B1_Mur4|SINE|Alu	4913.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.62689266360414	7.80912649080238	7.43139071571748	7.75309881895293	7.96866998848561	7.15886289630348	0.066264960956222	0.82006766780938	0.95744560051471
Merged-chr18-60977990-4	chr18	60977499	60978499	+	990.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009792, exon 4 of 7)	exon (NM_009792, exon 4 of 7)	14445.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	5.43439209721963	5.71785414110527	5.40719415710077	5.86423801155213	5.53943954098244	5.50202914087467	0.209774311417805	0.541984076947413	0.857034750433211
Merged-chr16-75769091-2	chr16	75768591	75769591	+	969.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2273.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	3.81937265860181	3.72416507862993	3.77388941404615	3.58299775796514	3.6999461812441	3.79282187001769	-0.269486644097982	0.614398166394053	0.887435546271868
Merged-chr7-105738395-2	chr7	105737895	105738895	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1010.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	3.88141628745373	3.60814479776127	4.09714079269735	3.85946693282922	3.87734721816919	3.83527613149852	-0.030987894559841	0.954156463264793	0.989495550016789
Merged-chr5-99371788-3	chr5	99371303	99372303	+	683.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-118876.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.73958370470132	4.83677302501131	4.75067866553874	5.27905860748761	5.23978539011893	5.04398161532744	0.915333085981503	0.0147872630825516	0.131342718464235
Merged-chr12-102354649-4	chr12	102354147	102355147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	71006.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.66437084974198	5.5077426207584	5.73124110920925	6.35517076934993	6.3672423455781	6.34868991332563	1.26355778404574	1.49773553619417e-05	0.000567244326334293
Merged-chr18-20743024-7	chr18	20742534	20743534	+	951.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3370.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.10700377625818	5.98639911682133	5.87544061618827	6.00791666146643	6.10796461697667	5.69561455307939	-0.062689455986532	0.840474060236471	0.962819298477451
Merged-chr6-52011782-4	chr6	52011268	52012268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	781.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	6.5792779938609	6.62719784285042	7.15580626465402	6.74722496789869	6.98744477131252	6.91252145524929	0.130502675248385	0.652190893773498	0.902896807825606
Merged-chr12-51678525-4	chr12	51677996	51678996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-12470.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	6.78237174971216	6.89070833984505	6.62729064705293	7.0088157043505	7.32863811569202	6.77078925087609	0.447585408166277	0.108426202011206	0.439879444999925
Merged-chr12-36036875-4	chr12	36036391	36037391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	5587.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	8.05717632962504	8.33405664151233	7.85245968478641	7.11804567952	7.48535927382813	6.90741611647829	-1.29420386675607	3.50674822022728e-06	0.00016228559839192
Merged-chr17-34294496-1	chr17	34293996	34294996	+	829.0	f1_balb.idr	Intergenic	Intergenic	-6725.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	5.45656027912247	5.24308524313098	5.11044146379266	6.22395019138436	6.23812345784419	5.52943872842748	1.39381539239725	0.000183536102451781	0.00466310595810924
Merged-chr10-127568899-2	chr10	127568399	127569399	+	870.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 36 of 89)	exon (NM_008512, exon 36 of 89)	-34340.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.10329908849881	2.83386053529417	3.08895274235024	2.94800502378121	3.05694262544718	3.32478288455394	0.452837914684192	0.512599348252183	0.842066780568736
Merged-chr9-75409363-4	chr9	75408822	75409822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	37.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	8.5365072982271	8.6967204623274	8.23213226230457	8.67362866680445	8.76392145645877	8.33304561642334	0.138666131722392	0.568719118582999	0.868718319030953
Merged-chr17-73055402-2	chr17	73054938	73055938	+	731.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52547.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.4620733146407	3.34543774980852	3.79500585194448	3.84531457399618	3.83970850021108	3.86421197975571	1.06757243963451	0.0608984578379433	0.319755622572778
Merged-chr8-46735731-4	chr8	46735224	46736224	+	824.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	3791.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	3.9706329605681	4.07218429100349	4.23715789135472	4.49987228568947	4.20427242775632	4.51459709935015	0.86101286094057	0.0697863425302149	0.345847445961977
Merged-chr11-98776010-4	chr11	98775546	98776546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-669.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	9.21035636345514	9.02873127325209	8.82155723282032	9.0442563710045	9.31112602210873	8.65360153673726	0.00647452836392832	0.97956658603605	0.995271707563192
Merged-chr2-129371572-2	chr2	129371071	129372071	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008361)	promoter-TSS (NM_008361)	-432.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.88324459401289	4.2685103705025	4.88317106593279	4.79214663136743	4.96636785037029	5.48280347279111	0.873658077066932	0.0642030029692193	0.330132121390363
Merged-chr13-110896085-4	chr13	110895571	110896571	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131194, intron 2 of 2)	intron (NR_131194, intron 2 of 2)	-7428.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	4.16846353089985	4.02447981987593	4.21687814666964	3.9023766333467	3.80602452179753	4.05912810663108	-0.648370746655437	0.192374236169095	0.579434056564092
Merged-chr11-117166017-2	chr11	117165517	117166517	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33644.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.41763829475968	3.10247914263084	2.99204818182878	3.08051836069193	3.11413967742731	3.30368835034102	-0.0969848720767227	0.885942537341688	0.973636976161493
Merged-chr2-180967187-4	chr2	180966705	180967705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-20.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	8.44940875034882	8.72304796969585	8.36682554708492	8.52775639163384	8.75250251879959	8.59863115346525	0.145537968289344	0.50996308974056	0.840623252721494
Merged-chr12-102694990-4	chr12	102694487	102695487	+	914.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9882.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	6.92833540528635	7.31696088030024	7.2833441796472	7.3913460697789	7.7425234436916	7.25924662403982	0.449242512179087	0.0967292132002831	0.41464408281404
Merged-chr18-4837485-1	chr18	4836985	4837985	+	546.0	f1_c57bl6.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24999.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.02841188032762	2.94092873557586	3.26860881986668	2.64435277127212	2.42704897906687	2.95586511265492	-2.11165470732507	0.0161111507654292	0.139512606191053
Merged-chr14-56571522-2	chr14	56571022	56572022	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001014996, intron 1 of 16)	CpG	324.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	4.16321293851825	4.14572326207593	4.44630034406772	4.08152369825498	4.00950642680338	4.31070120720868	-0.336882768488395	0.485756165948858	0.827570845088965
Merged-chr11-104442403-6	chr11	104441925	104442925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-134.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	8.32265917382968	8.57854462625986	8.46527257061115	8.41043153509024	8.42758898311016	8.46623689119063	-0.0364009112395087	0.860201596155597	0.967441103100897
Merged-chr11-61407977-4	chr11	61407507	61408507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-29932.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	7.42326465434931	7.7486970116938	7.56408108711285	7.46413989558159	7.99474067220957	7.57208417990469	0.172800668686178	0.511846802977007	0.841594846107395
Merged-chr16-16351528-2	chr16	16351028	16352028	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025947, intron 1 of 17)	Lx9|LINE|L1	7047.0	NM_001276341	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	3.51418584047582	3.63355003301654	3.98543331788331	3.90297709299514	3.75686841680783	4.14047241293732	0.696846758881516	0.214456495065879	0.607538973573768
Merged-chr1-13370580-4	chr1	13370087	13371087	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	1842.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.82600941653718	2.88451039906297	3.03613224007731	3.18749762812889	2.98548333869952	3.04970693462638	0.759909765947321	0.264794484446543	0.662666328517541
Merged-chr13-42103127-4	chr13	42102614	42103614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51093.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	6.55499115030858	6.56918569622693	5.86214270652671	6.41276552356453	6.71036618471256	5.89779208814505	0.0267519072726555	0.942476248042877	0.987202156853573
Merged-chr8-126661782-1	chr8	126661282	126662282	+	772.0	f1_c57bl6.idr	Intergenic	Intergenic	-68346.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.57960914179496	2.43649716425062	2.81802870991103	2.57254161727509	2.42985737451688	2.71445429699373	-0.241229004352675	0.763626482556812	1
Merged-chr1-170708361-2	chr1	170707861	170708861	+	597.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	63829.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	4.02256185171662	3.98453307111061	4.06362691561189	3.63563188895327	3.76711738814388	4.13104121679517	-0.523371885292838	0.324123153894001	0.717287790132387
Merged-chr1-191396677-3	chr1	191396178	191397178	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144880, exon 1 of 13)	5' UTR (NM_144880, exon 1 of 13)	363.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	7.93363479749464	7.56390099645663	7.66586210976672	7.90652678272407	7.56106682798487	7.97479480943238	0.127202969620506	0.612999408435176	0.886978895339216
Merged-chr1-84350454-4	chr1	84349949	84350949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65804.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.80342431102326	5.51242580977417	5.49121823454903	5.63671669782602	5.67120541036252	5.6123401138514	0.0473014870693714	0.884706879102441	0.973538624783452
Merged-chr9-59726666-2	chr9	59726166	59727166	+	800.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18902.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	6.23215043804615	6.30903264091998	6.54231175131981	6.29225964675621	6.41942671843315	6.56804797209584	0.111515304773818	0.691512074162662	0.918349474539044
Merged-chr10-111368389-1	chr10	111367889	111368889	+	713.5	f0_balb.idr	Intergenic	LTR48|LTR|ERV1	69710.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	2.58623851450184	2.77976319174033	2.74252581624298	2.70547119841462	2.413063409657	2.62869691625342	-0.67545139197938	0.391985406875823	1
Merged-chr11-54156785-2	chr11	54156285	54157285	+	831.714233	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55861.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	4.89676929588045	4.63225842004734	4.99688435894708	4.68646315716011	4.79391612893716	4.69563884130906	-0.257905367754413	0.525402983674531	0.848999112257332
Merged-chr7-82867133-4	chr7	82866648	82867648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175366)	promoter-TSS (NM_175366)	-185.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	5.12345699780082	5.35150100086634	5.42934041482706	5.83142950135437	6.03878552233603	6.3663391152254	1.44375447546238	2.60193750333108e-05	0.000913510615093553
Merged-chr6-134428005-2	chr6	134427506	134428506	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 3 of 5)	ORR1E|LTR|ERVL-MaLR	13578.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.75360873761918	2.67666517838358	2.928991881952	2.63400270374144	2.53682879409649	2.82719759699911	-0.651523262221583	0.39078937291107	0.769945246588828
Merged-chr6-108695463-3	chr6	108694974	108695974	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34540.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.52394125077649	3.41021356966873	3.21668392225268	3.49406643856134	3.46685829674854	3.57657059222154	0.423580950997065	0.480266014416822	0.824537487093219
Merged-chr3-106558438-4	chr3	106557928	106558928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	intron (NM_001025582, intron 3 of 6)	-10626.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.28398668683797	5.96396314145965	6.09718130739043	6.6443280587922	6.36962582258307	6.73717893257487	0.758493930153993	0.00985587781650912	0.0994528112243622
Merged-chr5-143473257-2	chr5	143472757	143473757	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 3 of 14)	intron (NM_144915, intron 3 of 14)	8764.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	3.88579861803944	3.49816390968298	3.77247725275179	3.73414968534515	3.86170553058204	3.62953963727514	0.0759707268733907	0.892370808949371	0.975093438798399
Merged-chr4-59814900-2	chr4	59814400	59815400	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9250.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	5.31731808326718	5.12762143765469	5.27558489360922	4.97131621284462	5.01999775266265	5.2460197625282	-0.341142192586344	0.347554678366253	0.735652974422286
Merged-chr4-155066987-4	chr4	155066479	155067479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-51.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	7.60854711014656	7.73373572222907	7.54077090455215	7.97514898557883	7.8823302355319	7.3092886228295	0.188990263797512	0.478569849746311	0.823834402333981
Merged-chr14-34673854-4	chr14	34673363	34674363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301330)	promoter-TSS (NM_001301330)	-65.0	NM_001004436	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	8.13785028123033	8.00926602328847	7.78702437139992	7.98907834394014	7.73953600448557	7.88470238480702	-0.169886470211549	0.461069390713708	0.814864376583716
Merged-chr16-77016177-4	chr16	77015680	77016680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	2111.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	6.53509433973245	6.4666728534626	6.31650011174434	6.5650594832854	6.8115030860579	6.33586776230223	0.241857265814389	0.397014100863788	0.773919393338973
Merged-chr6-128408747-4	chr6	128408243	128409243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133927)	TTS (NM_133927)	8977.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	3.81473168151908	4.19293927781207	4.1177878958499	3.77531039784989	3.80142006590211	4.00274991851065	-0.597965318394183	0.25326232803247	0.650656162496163
Merged-chr14-36953362-3	chr14	36952887	36953887	+	885.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	Lx9|LINE|L1	-12123.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	3.42033738352017	3.15449203272002	3.14475968383999	3.23268667194499	2.98485576184645	3.27574898154814	-0.354468662698289	0.590931937240742	0.877301111216348
Merged-chr14-74917918-4	chr14	74917364	74918364	+	736.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	30013.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.19750321867528	5.43087829967293	5.41684577620368	5.81765680263683	5.84467992214202	5.88001148234252	0.92786816592344	0.00400782809996037	0.0520092577263728
Merged-chr16-84814718-4	chr16	84814206	84815206	+	754.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023844, intron 5 of 9)	intron (NM_023844, intron 5 of 9)	20270.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	2.80982890466624	2.81769101951219	2.83983760353852	2.56256281425401	2.73232382707226	2.7916705658708	-0.654137663619119	0.376521428540656	0.759284451214457
Merged-chr13-63108803-3	chr13	63108311	63109311	+	992.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-131218.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.84656974104908	3.84917190276045	3.43671041338825	3.07505853507204	3.07618445024192	3.27050040206921	-2.46774430211519	0.0002456114724775	0.00591686143656856
Merged-chr11-117195740-4	chr11	117195229	117196229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3932.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.87577342598162	7.12185880751535	6.75183689884244	7.20738072267356	7.31908895299536	6.26105254736604	0.139954345665548	0.688920246811264	0.917235946766438
Merged-chr17-71260537-3	chr17	71260029	71261029	+	953.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	B1F|SINE|Alu	50482.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.88081659900243	4.78026445484407	4.75551759020747	3.87535068797635	3.39297171624721	3.87894301946272	-3.3879905472353	6.48270945076109e-09	6.14365931638871e-07
Merged-chr1-172315161-3	chr1	172314665	172315665	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	2798.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	5.58325351181666	5.51952384048065	5.58361661950588	5.0277381356135	4.59799086233716	4.75033782808273	-1.58549501857433	2.82839913673294e-05	0.000979381753513417
Merged-chr19-29380745-4	chr19	29380240	29381240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	13302.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	5.59045198234352	5.30922561697732	5.37954135067184	5.51728455789213	5.29613678672708	5.34962557548501	-0.0877958227341584	0.798842209793946	0.952063885260145
Merged-chr11-53351737-4	chr11	53351211	53352211	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	944.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	8.1746379709581	8.41146514461548	7.98551706783147	8.00791217644863	7.9301389672572	7.95710580643696	-0.344591930327553	0.129668190515813	0.48172009397354
Merged-chr17-23968004-5	chr17	23967515	23968515	+	811.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7215.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	5.53505463133797	5.0862943480521	5.11432233760191	6.18791938715429	6.16523179280631	6.24691376728394	1.68088040242502	9.16191566374555e-07	5.01212806409559e-05
Merged-chr1-36053692-3	chr1	36053301	36054301	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14599.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.93336297590803	4.70929342786041	4.88717462765413	4.69844485696105	4.4282963732133	4.60699919388527	-0.629556334961432	0.127264796082771	0.476894805334618
Merged-chr11-101231650-2	chr11	101231150	101232150	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5187.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	5.3996600686739	5.60150134240007	5.87727991720688	5.49201111768356	5.68993686094463	5.69704324922335	0.000507962459691745	0.998804203518675	0.999777890446572
Merged-chr6-134263583-3	chr6	134263134	134264134	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 8 of 8)	intron (NM_001303102, intron 8 of 8)	-132695.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.79133165808768	5.66373832596328	5.63243955482907	5.02367192057954	4.79625093390495	4.70631182607387	-1.71731121612549	2.69785184594391e-06	0.000129384931641096
Merged-chr8-111854370-4	chr8	111853858	111854858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011801)	promoter-TSS (NM_011801)	-48.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	5.64503630651772	5.90332723332026	5.33449332892676	5.92882115397243	5.76897973052073	5.18186412249658	0.0307161400194833	0.937462292612568	0.986057836872162
Merged-chr3-59213764-3	chr3	59213238	59214238	+	895.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-2856.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.12893988960162	5.97372594414424	6.0556492602876	6.23217011041996	6.28932981981503	6.22386991492565	0.333786394319509	0.234042936135958	0.630336450234692
Merged-chr16-21778682-3	chr16	21778183	21779183	+	870.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023737, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	9151.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	4.63427974574295	4.606852877808	4.84143725182368	4.32391537307602	4.60632445984288	4.48071402042646	-0.508555842787831	0.23773007116814	0.634251755859902
Merged-chr2-59203145-4	chr2	59202662	59203662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42312.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.68070065073941	4.21402629424267	4.27616679060629	4.52458789246928	4.35885604692994	4.19976619408321	-0.107740149699668	0.82172412939171	0.958023303204974
Merged-chr16-37684888-4	chr16	37684395	37685395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30527.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	3.62147721974212	3.76340280406686	3.81859789405813	3.68586305883959	3.5051393548467	3.57761173194789	-0.497229349444769	0.367657970753302	0.752612310816183
Merged-chr18-34927715-4	chr18	34927222	34928222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	PB1D7|SINE|Alu	4281.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	5.89335577368766	6.2717824319926	5.96765379811887	6.07008642187382	6.23311039787573	6.22643701227777	0.198928906785941	0.509363328897381	0.84026772146894
Merged-chr8-4615189-2	chr8	4614689	4615689	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	ORR1A2|LTR|ERVL-MaLR	2019.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	3.4712362993993	3.6034885517336	3.45734550535948	3.72030416166696	3.53961652703136	3.35246248278278	0.126712941773514	0.829504928544928	0.960114979147503
Merged-chr10-8753640-3	chr10	8753156	8754156	+	864.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	132414.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.49007140785791	4.32386439547676	4.50674677448113	4.62770918553428	4.32670822296438	4.49002760985935	0.110602732168063	0.801499440921235	0.952995299515894
Merged-chr11-58938951-4	chr11	58938444	58939444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-38.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	6.75799205192259	6.2569415021899	6.31407217641802	6.68207037602565	6.35961217708769	6.62863724856002	0.143930503872625	0.634569665534693	0.896350313439852
Merged-chr3-145653461-4	chr3	145652971	145653971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3486.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	5.65866918201559	5.62475842797625	5.83517728858474	5.5520258453139	5.39478181751557	5.72610604023239	-0.278935843160132	0.394544320127491	0.772514857254462
Merged-chr5-139558599-3	chr5	139558073	139559073	+	889.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14675.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	2.19512400538048	2.27603504694566	2.29530425696932	2.02784365271233	1.92876505488348	2.0373213261217	-2.2033601352257	0.0267351123262046	1
Merged-chr17-23983059-4	chr17	23982560	23983560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7830.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	7.95467917321563	7.91851264680912	7.30048214380756	8.05573887879798	8.45091765077526	7.65814758671063	0.480078675730603	0.119259157840862	0.461700534358253
Merged-chr17-71126282-2	chr17	71125782	71126782	+	640.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010867, exon 38 of 38)	exon (NM_010867, exon 38 of 38)	-57250.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.39380105927549	4.47078636551594	4.10714375578984	4.1646433464427	4.29593994451776	4.17719070559089	-0.334019481406194	0.477774889708934	0.823367525497911
Merged-chr10-42277771-4	chr10	42277267	42278267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-1005	-1025.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	8.63145188517839	8.96053329296872	8.67316723851398	8.62204423641949	8.95741380727291	8.34202572095682	-0.127776526851098	0.61095070232953	0.885849400663435
Merged-chr4-146454602-2	chr4	146454102	146455102	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	intron (NM_001085522, intron 1 of 3)	5572.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	3.47278726358292	3.63117973893712	3.33900419154247	3.34824583942712	3.45817240496919	3.92221241719065	0.362969611964153	0.561755828009246	0.865571255453378
Merged-chr8-25605466-2	chr8	25604966	25605966	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	ID_B1|SINE|B4	3182.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	3.46618187947164	3.32358077614338	3.53127751139688	3.51695241206352	3.37952147356302	3.65251925244234	0.278078719130003	0.635344628272979	0.896470397811433
Merged-chr16-30443457-2	chr16	30442957	30443957	+	641.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54927.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	1.92055146492449	1.93564498198105	2.01054606844051	2.09167791179776	1.96910292383446	2.21842876219677	1.09902585546828	0.240843925324761	1
Merged-chr11-101667190-2	chr11	101666690	101667690	+	768.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_025404, exon 2 of 2)	exon (NM_025404, exon 2 of 2)	1649.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	2.54449067898206	2.43826967082032	2.62733899141727	2.45297093604824	2.33350898731122	2.63974203158197	-0.364205536678203	0.652415656941778	1
Merged-chr2-166639238-4	chr2	166638747	166639747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 3 of 39)	intron (NM_177782, intron 3 of 39)	74585.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.11326798739112	5.22918173577156	5.01896097251084	5.38609026767079	5.11412794934784	4.80889940293526	0.00974492352986053	0.980072379271596	0.995433115258422
Merged-chr7-131560344-4	chr7	131559841	131560841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009774)	promoter-TSS (NM_009774)	-29.0	NM_009774	12237.0	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	4.78754086887987	4.9539438582927	5.55383843332825	5.07506876672762	5.26826511507749	5.12842878566294	0.0708893655054192	0.865402742808095	0.968641478520565
Merged-chr4-125051862-2	chr4	125051362	125052362	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145552, intron 12 of 15)	intron (NM_145552, intron 12 of 15)	13795.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	3.85352817114143	3.75604707412987	3.67993498079565	3.59091700168738	3.5586503186426	4.0393081442118	-0.0974047472281335	0.863350747329333	0.96822816879546
Merged-chr5-31221323-2	chr5	31220823	31221823	+	902.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-778.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	6.23594903218701	6.38613231836893	6.57478164837666	6.18557545468313	6.3894775601227	6.37365358737861	-0.128967278534332	0.648413883914444	0.901777316529257
Merged-chr2-31447705-4	chr2	31447188	31448188	+	930.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22582.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	3.52071832375706	3.51263616121006	3.39362204803323	3.63850489017164	3.72017864390858	3.78935679108368	0.822352986086958	0.143360958317423	0.505400107113741
Merged-chr1-131979246-3	chr1	131978744	131979744	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	L3b|LINE|CR1	8635.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	5.35677363251957	5.64985502537353	5.7616753589788	5.38633480642403	5.49101515696827	5.53710908593108	-0.230953921969367	0.495905831015454	0.832796350630003
Merged-chr10-21825114-2	chr10	21824614	21825614	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57070.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.35921654197722	2.29197687005331	2.52155384882659	2.4585914578381	2.43841506331329	2.65607843676397	0.789236920862262	0.333649110270198	1
Merged-chr3-108112363-1	chr3	108111863	108112863	+	678.0	f0_balb.idr	intron (NM_010306, intron 6 of 8)	intron (NM_010306, intron 6 of 8)	19297.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	3.37566659955471	3.60874307621386	3.76036579425573	3.43438124857923	3.46212533229055	3.18123854463443	-0.809305958223728	0.198892654593524	0.587343866831168
Merged-chr1-34510813-4	chr1	34510313	34511313	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12401.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	3.66599900892087	3.37733434256328	3.55637629054422	3.50339096077347	3.44843316718049	3.5192170749269	-0.181967483289373	0.753428683562589	0.938549578325581
Merged-chr17-47598185-3	chr17	47597687	47598687	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 6 of 6)	AT_rich|Low_complexity|Low_complexity	4720.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.28511538599884	3.14395907629964	3.54712071161106	3.31089150743232	3.36642425064094	3.17748921903996	-0.146577512080888	0.818113266437769	0.956842917576288
Merged-chr1-13652925-2	chr1	13652425	13653425	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	MTB|LTR|ERVL-MaLR	7584.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	5.94302229097995	5.98432221962858	5.90672274006263	6.07904835131441	5.88817332592809	5.46089574177858	-0.175957869031921	0.593814536162628	0.878636435049702
Merged-chr1-170953405-4	chr1	170952889	170953889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22682.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	6.08463895372366	5.70841628166877	6.09285145371346	6.19891721966322	5.80011940266806	6.34816623846714	0.268936689213165	0.419299035499319	0.788930112802127
Merged-chr9-124257635-3	chr9	124257150	124258150	+	818.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55044.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	4.23191117649658	3.85634360881727	3.97353988268749	4.23557512746065	3.85568382399762	3.88880706318436	-0.0808001048576934	0.878197256439726	0.971842464414451
Merged-chr8-80272094-4	chr8	80271581	80272581	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214073.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	5.02661499323071	5.21499993208915	5.31708085825271	5.30126187944583	4.84673232547689	5.6955930260538	0.257122589870864	0.537233599145215	0.854346835765953
Merged-chr17-66216120-4	chr17	66215635	66216635	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92615.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	4.09870335695536	4.01905026192906	3.98370920736796	4.18736273974641	4.04881859722672	3.78759634674733	-0.0333352829211148	0.947535120772353	0.988008807662239
Merged-chr17-29024600-4	chr17	29024106	29025106	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8054.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	2.79525940444713	2.88083365982811	3.1924757747698	2.92456860590293	2.64293819144527	3.04425601805227	-0.407771307663517	0.584978882193218	0.87477799647552
Merged-chr4-40699957-1	chr4	40699457	40700457	+	541.0	f1_balb.idr	intron (NM_001025444, intron 1 of 7)	RLTR20B1|LTR|ERVK	2959.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	5.96978000433407	5.56772485600816	5.72339260448928	5.67654868126855	5.4817672402043	5.16576630593216	-0.554774369254561	0.120110428966689	0.463421523391462
Merged-chr11-73324649-4	chr11	73324142	73325142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023113)	promoter-TSS (NM_023113)	-5.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	8.76621457020506	9.02576550009417	8.43730010547949	8.55494359433412	8.95004033341938	8.40310154370014	-0.147509756399918	0.576511672499707	0.871585692229598
Merged-chr7-121076988-2	chr7	121076488	121077488	+	675.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021554)	TTS (NM_021554)	-2458.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	4.27136107259339	4.22500744460528	4.43500649737532	3.86954489518318	3.98374378133389	4.57625330869526	-0.376295784126742	0.472510132145725	0.820550293768681
Merged-chr15-76199465-4	chr15	76198965	76199965	+	944.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201392)	promoter-TSS (NM_201392)	-59.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	3.91211930078961	3.55431525386845	3.61254607476096	3.66656608548107	3.30536810009877	3.45929707665772	-0.78628454867914	0.189648240882552	0.575646702603018
Merged-chr11-97836854-2	chr11	97836355	97837355	+	887.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-3925.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	2.66264618597188	2.54681436005769	2.85708656035368	3.04915122025086	2.61533488518478	3.37033235474118	1.71577273103115	0.0349544472595046	0.229376155171046
Merged-chr6-8419160-2	chr6	8418660	8419660	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	90001.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	3.05958567512452	3.24502604951204	3.43393317802928	3.06863113159233	3.04450817538764	3.45265830972274	-0.227902762605851	0.73411076421236	0.932325051544019
Merged-chr18-62182125-1	chr18	62181625	62182625	+	941.0	f0_balb.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2025.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.29152324135398	6.13534082322447	6.23795493626637	6.40322092861715	6.49032107239099	6.65474981252305	0.480686329377805	0.0796955930196999	0.373321561897382
Merged-chr10-81390683-2	chr10	81390183	81391183	+	873.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2381.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	3.43891648029715	3.38193880020377	3.79516738662364	3.72209654514619	3.43758502951803	3.61548962943697	0.18251898361453	0.758138481626012	0.940094880692923
Merged-chr13-45006055-4	chr13	45005533	45006533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3937.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.55231756603655	6.70079723901517	6.26498403303647	5.76292324118945	5.88549430953624	5.75406330631496	-1.21743288326733	4.98512942964287e-05	0.00157749906526353
Merged-chr2-102967001-4	chr2	102966501	102967501	+	847.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-65336.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.93197167017098	6.79027926814722	7.0512465772006	6.73940441840763	6.62305205604934	7.07183478858159	-0.168855743568186	0.533201497036078	0.852250319483483
Merged-chr4-44013086-4	chr4	44012601	44013601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	CpG	451.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	7.7262196099666	7.98859100811435	7.75622453145346	7.70565754955337	7.55803159043044	7.92510461699962	-0.144037234552994	0.544678519346915	0.857892639228796
Merged-chr18-36760235-4	chr18	36759711	36760711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026464)	promoter-TSS (NM_026464)	-11.0	NM_026464	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	5.36496633852229	5.50091065722658	5.53164687535056	5.4534830982894	5.40601480065158	5.29369868151971	-0.143790537817413	0.666816127242929	0.908404464965531
Merged-chr18-4944613-3	chr18	4944109	4945109	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101980.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	3.38288830005475	3.47716064573562	3.39200335361679	3.62761042882862	3.35459469250277	3.40681187730325	0.179975796441847	0.761132668681322	0.941142869178598
Merged-chr17-36121008-2	chr17	36120539	36121539	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010395, intron 3 of 12)	intron (NM_010395, intron 3 of 12)	396.0	NM_010395	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	5.09950469374517	5.26233472119297	4.55319882065393	6.17222157195183	6.35306023081749	5.70183437335324	2.10924661048773	0.0158021376437094	0.137768678652323
Merged-chr3-105803143-3	chr3	105802638	105803638	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1757.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	7.29787779407044	6.99749262281987	7.11163640739113	7.40327121961111	7.33469302181315	7.30179965032437	0.306024087094214	0.202842643524011	0.592772302593993
Merged-chr10-22299502-2	chr10	22299002	22300002	+	810.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7218.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	3.99943307586324	4.42705503600772	4.53900871517311	3.98971130144246	4.08355602185415	3.94367789837329	-0.907598945168194	0.0751139479018279	0.360915031822129
Merged-chr11-35708626-2	chr11	35708129	35709129	+	752.0	f0_c57.idr|f1_c57bl6.idr	TTS (NM_011412)	TTS (NM_011412)	-60866.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	3.39792847453664	3.1358931887147	3.6083580786096	4.05712616023065	3.97604795487434	3.7350163106771	1.94632400180748	0.00154278428453594	0.0252353046486468
Merged-chr14-31252404-2	chr14	31251904	31252904	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027088, intron 3 of 16)	PB1D9|SINE|Alu	915.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	5.16233005742146	4.92146975102053	5.12800643257102	5.3193824866696	5.10768121324731	5.08976097584834	0.220350152496336	0.549176795964381	0.860222940806916
Merged-chr14-77081460-2	chr14	77080960	77081960	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310649, intron 3 of 3)	intron (NM_001310649, intron 3 of 3)	44688.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	3.00467177416873	2.98370552140491	2.8626916455322	3.08262692772645	2.94866190417782	3.17380638457841	0.513893042047818	0.449754027728865	0.808012616706586
Merged-chr6-115767542-4	chr6	115767044	115768044	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5078.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	4.25464537640228	4.21272689082006	4.20523739235227	4.26132601227305	4.41339079468066	4.27367185377395	0.263845119459928	0.560143895608028	0.86517480267848
Merged-chr16-57431485-3	chr16	57431006	57432006	+	866.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	78229.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.66525366552717	2.59063655085365	2.61997835850109	3.17260117924223	2.89525778359015	3.50699293216564	3.07723055028632	0.000291718959935165	0.00680688480602503
Merged-chr15-100419527-2	chr15	100419027	100420027	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	3528.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	3.36183408601708	2.80740204315835	3.15873769130858	3.28697961540754	3.30678969529903	3.40126736906066	0.812656371265452	0.251254383818646	0.648731936769727
Merged-chr14-19990633-2	chr14	19990133	19991133	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13384.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	2.28857646910015	2.15179420454097	2.35022589010283	2.12416417515805	1.84535718198118	1.95213506355435	-2.47441055898676	0.0245209966869733	1
Merged-chr19-29367390-4	chr19	29366902	29367902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021893)	promoter-TSS (NM_021893)	-36.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	8.35796550234896	8.32327945230848	8.06894222166795	8.45312894424214	8.84643215580255	8.32150210778409	0.427023705176211	0.0806603419316414	0.375809716750547
Merged-chr1-4873491-2	chr1	4872991	4873991	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159750, intron 2 of 9)	MTA_Mm|LTR|ERVL-MaLR	15163.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	4.21897219462548	4.09297738870403	4.32204701121453	4.71695063514579	4.68599969205393	4.64366906979566	1.22051266507207	0.00504944958973479	0.0616280620745272
Merged-chr12-3359532-4	chr12	3359042	3360042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5590.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	7.50869253561284	7.83419630817284	7.5888723458321	8.08096617163612	8.40065122503889	7.69390114029046	0.635951448935519	0.0189547527561762	0.155863926014024
Merged-chr15-103510442-4	chr15	103509926	103510926	+	859.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3300.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.32881538018511	3.46088841231898	3.50975691119644	3.45832698098405	3.31331253279322	3.63104122694509	0.124860015522874	0.833477881898913	0.96108264611081
Merged-chr4-147122431-2	chr4	147121931	147122931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-53435.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	2.87128926494717	3.24722612794952	3.10092518053339	2.90793900667927	2.96958408562055	2.93407481635757	-0.670051374961755	0.337119884483024	0.727031888346252
Merged-chr9-114900807-1	chr9	114900307	114901307	+	584.0	f1_c57bl6.idr	3' UTR (NM_175380, exon 8 of 8)	3' UTR (NM_175380, exon 8 of 8)	33180.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	2.25772997147611	2.56808468698134	2.43475466723554	2.82691585674153	2.67333446845735	2.77057506598244	1.96264546190142	0.0257524799678813	1
Merged-chr14-121372019-4	chr14	121371509	121372509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	7221.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.14160079728014	5.01804269237021	5.18271643304974	4.5599928100198	4.57648619823239	5.15353303704992	-0.735847732147337	0.0801430032794823	0.374531817853365
Merged-chr2-91183989-4	chr2	91183495	91184495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-948.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	5.64170046914381	5.36462089694017	5.5764817083048	5.58269466473913	5.45078687316634	6.09967384157575	0.366907002940042	0.313390971029077	0.70796937304557
Merged-chr6-131268409-2	chr6	131267921	131268921	+	756.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21059.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	4.09494530329052	4.59421652770208	4.76696210844375	4.6284438900956	4.75620148162182	5.270261484494	0.917583222445496	0.0611749351719416	0.320786740974724
Merged-chr9-107724392-4	chr9	107723896	107724896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13921.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	6.83821296387748	6.86045283024481	7.04459564808301	6.94050928087191	6.95223367389467	6.87090189522245	0.0200650814097926	0.93491346998624	0.985727573165395
Merged-chr1-152677277-4	chr1	152676774	152677774	+	972.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-52057.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.95446873576482	5.85635163192295	5.96611600055483	5.74501625596122	5.81939378239106	5.81152907124783	-0.233562241311426	0.433851331029121	0.798055448649894
Merged-chr8-84224212-1	chr8	84223712	84224712	+	630.0	f1_balb.idr	exon (NM_172503, exon 8 of 14)	exon (NM_172503, exon 8 of 14)	12830.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	2.82212994285731	2.71309651375104	3.10710420060843	2.65416327499835	2.74708920436807	2.83825496941336	-0.701644427950605	0.345996557647224	0.734486862992326
Merged-chr14-17903247-4	chr14	17902750	17903750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-78394.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.86080382922826	5.86485091616254	5.88124834597224	6.05962322362634	6.03381647955668	5.84274517515445	0.212422857683143	0.473009251580323	0.820601745007875
Merged-chr11-20202514-2	chr11	20202014	20203014	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1102.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	8.82831795542486	9.43222977785013	8.46728291830463	8.92225480830687	9.3387828295211	8.69186953411552	0.0502688508028405	0.871304455471816	0.970222087171093
Merged-chr6-100144898-2	chr6	100144398	100145398	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	142460.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.93651258665422	3.16021162446611	3.03115278442013	3.22289888342885	3.04295636359348	3.43237907058855	0.822493562254295	0.22361456030857	0.618382808805725
Merged-chr7-99090091-3	chr7	99089565	99090565	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51079.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.01729032565182	5.62255459442066	5.87174154359255	5.79239864052953	5.92945328678137	5.88469232772787	0.0450917030130736	0.886405320878526	0.973794308941933
Merged-chr19-28657292-1	chr19	28656792	28657792	+	817.5	f0_balb.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-20932.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	2.97244670902186	2.86251166386659	3.03115901632446	2.7359078322596	2.63505362894202	2.86939253279088	-1.09188402687756	0.134021835351495	0.489430895003259
Merged-chr2-30408570-3	chr2	30408062	30409062	+	910.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 4 of 13)	intron (NM_007760, intron 4 of 13)	7186.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	4.42008607892754	4.13701761586261	4.74402413057614	4.53536030594315	4.53543397301154	4.50201920858806	0.20048330198622	0.664758487400471	0.907721942545399
Merged-chr7-49762846-4	chr7	49762322	49763322	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	3310.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	4.47924177896637	4.81589686602995	4.34272834773442	4.38931130579032	4.41598589109396	4.4115377252121	-0.416974908126444	0.354592953272346	0.7417627154336
Merged-chr16-9133007-4	chr16	9132545	9133545	+	753.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	302945.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.3720584765607	3.39096138094473	3.66046180518172	3.1962644212599	3.16412416893528	3.53172821351193	-0.682316540004456	0.278275501577079	0.675555045695919
Merged-chr2-23097201-4	chr2	23096699	23097699	+	773.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355638, intron 10 of 13)	MTEb|LTR|ERVL-MaLR	28127.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	3.14872579338519	3.37179534816441	3.21446130799778	3.37830798644875	3.07179867592796	3.55790418434672	0.373077577072593	0.568351151437686	0.868549528189122
Merged-chr9-111037597-4	chr9	111037095	111038095	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	18303.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	3.94576986712401	3.98643093544539	3.9938583114259	4.25592373360379	3.83093732957667	4.20249504919735	0.374009721869504	0.4622723446763	0.815159087955196
Merged-chr6-51532815-4	chr6	51532330	51533330	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	8570.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.48014490617244	5.80385061014781	5.88244831097254	5.85323207016135	5.7453532053407	5.8966171355165	0.183206746143345	0.568956492812976	0.868799101759595
Merged-chr15-68058827-4	chr15	68058314	68059314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200042.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.04412958837398	6.28601244178596	5.92835481630853	5.85671997540057	6.35989914794852	5.99005104688085	-0.00548329383255307	0.986477850551621	0.997046485784555
Merged-chr13-67061087-4	chr13	67060603	67061603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	67.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	5.83365502643978	6.04508172573303	6.17619862723474	6.35435137230179	6.1291658409	6.25647399064416	0.388147803773971	0.188780072875801	0.574270182570455
Merged-chr8-35708022-4	chr8	35707521	35708521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118538.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.43305026919633	3.40681823859338	3.62413690126351	3.9584926483331	3.59160610613605	3.58694780116279	0.839146684166691	0.147451268286964	0.512338818292416
Merged-chr9-37255325-2	chr9	37254825	37255825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020258, exon 1 of 18)	exon (NM_020258, exon 1 of 18)	413.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	7.93609601461964	8.27723692546984	7.7915995806726	7.73413816012418	7.89778226971326	7.68681999665936	-0.349097485390613	0.152924908159781	0.521477634447729
Merged-chr9-118723181-3	chr9	118722703	118723703	+	924.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	11511.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.25543075151445	3.9984013577698	4.56342190696427	4.1204722282949	4.19268645899523	4.07896381910692	-0.405247007757329	0.415985029916549	0.786885495180028
Merged-chr3-96692778-4	chr3	96692334	96693334	+	876.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3541.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	3.52747006111326	3.71381885023502	3.65464806771775	3.8101113062895	3.86726473426732	4.15432774307316	1.0067135246123	0.0642337947789569	0.330188768515935
Merged-chr17-17898518-1	chr17	17898018	17899018	+	596.0	f1_balb.idr	Intergenic	B3|SINE|B2	10694.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	2.50174101722653	2.67330137152534	2.77906758201346	2.64711062041719	2.53113695873954	2.96633912000625	0.366369048732152	0.640850017840872	0.898653895821881
Merged-chr18-54847751-2	chr18	54847251	54848251	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142429.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.03804803171899	6.18230518282148	6.49347867393161	6.21646439805338	6.20751170703219	6.28210783018827	-0.0116382103138934	0.968441042076905	0.992792165162521
Merged-chr11-21377742-3	chr11	21377253	21378253	+	771.844421	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6486.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	4.21281371838718	4.54616510812752	5.12409537902327	4.68299457383278	4.72743404732828	5.09728625300804	0.383228000258357	0.437047537390587	0.799765712162923
Merged-chr10-14179440-4	chr10	14178923	14179923	+	900.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	213044.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.01873867073161	4.18287426203005	4.18001426393687	3.82811968238563	3.71560872265975	4.28931088288426	-0.505488416264074	0.341530317176947	0.730894271945484
Merged-chr13-102886378-4	chr13	102885861	102886861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	126106.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.67219407899892	5.88618312169804	5.85664299424794	6.06922790605496	6.15110505746771	6.22644183934384	0.594331418116229	0.0447144103438747	0.266613877168981
Merged-chr5-117891766-4	chr5	117891291	117892291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	24952.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.57112053467266	6.17935383181327	6.87005589315797	6.5272649639694	6.29982425209324	6.48530032596933	-0.199783417126794	0.519470733252553	0.84582839931823
Merged-chr6-38963841-2	chr6	38963341	38964341	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	L1MB4|LINE|L1	44855.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.73146446015594	4.11381835916501	4.43675096870919	4.26192053907558	4.57939601992371	4.77681629296513	0.240085005209314	0.625364324868338	0.892493785592319
Merged-chr17-5561408-3	chr17	5560912	5561912	+	598.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	68812.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.82131833623015	3.92151892828612	3.61029317332364	3.67255992149626	3.64186991647056	4.16611103747824	0.141634139840432	0.804809907891164	0.953651704501661
Merged-chr2-119740746-4	chr2	119740207	119741207	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	3.47164468516184	3.67154245471648	3.66456305899622	3.81615563672821	3.56559330299898	3.73468876277552	0.347593083939316	0.532657129935258	0.851971173271146
Merged-chr1-59670245-4	chr1	59669730	59670730	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009460, intron 1 of 4)	intron (NM_009460, intron 1 of 4)	604.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	8.29187950366923	8.26908859931207	8.24020424465813	8.36348373268884	8.17051691347173	8.2708007347494	0.00160443822512621	0.993772360150758	0.998777772262979
Merged-chr12-26453249-2	chr12	26452749	26453749	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	3203.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	3.90196927377822	3.80412237252555	4.17631598643742	3.66555549883804	3.69483094758931	3.88343773055805	-0.685742446579183	0.200285407273964	0.589262190319174
Merged-chr7-68130104-4	chr7	68129601	68130601	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134132.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	4.55032541971992	5.0025383413968	5.09047891927854	4.65617790479896	4.63663087608252	5.05878772173822	-0.243075160596214	0.577847103755953	0.87219514592351
Merged-chr9-21527375-2	chr9	21526875	21527875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	B2_Mm1t|SINE|B2	1198.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	7.04889701732559	6.86850674866583	6.99734989613928	7.54280571428368	7.57516714543106	7.29496237156808	0.763201301328183	0.00155997300058674	0.0254713958855615
Merged-chr19-5952567-2	chr19	5952067	5953067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	11639.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	5.60707804299685	5.34649988408927	5.3108609842708	5.63835857825567	5.58365744315348	5.61439088995016	0.33360632311496	0.315950609924174	0.710146362792292
Merged-chr19-56689372-4	chr19	56688875	56689875	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32997.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.07647490019322	4.22411144862155	4.03468409715949	4.41624637179539	4.40349997188858	3.83085221058869	0.374580586660622	0.472002478031233	0.820417342888691
Merged-chr8-71273234-4	chr8	71272751	71273751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163042)	promoter-TSS (NM_001163042)	537.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.1319293525804	7.32556015609046	7.56659981312274	7.45170957062129	7.49660282900365	7.48907958852397	0.196463425895039	0.419089438072052	0.788801788481746
Merged-chr7-27179020-4	chr7	27178492	27179492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-109.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	6.70125899507983	6.57041273775603	6.80401109820354	6.88814632409814	6.91500996239806	7.02763273845253	0.392773834386396	0.118284113750133	0.459528645854937
Merged-chr6-136939609-3	chr6	136939101	136940101	+	843.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-74.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	5.89960218414517	5.90851641803993	6.11289282864433	7.20245577396267	7.39584005687306	7.21905543915426	2.08954274820448	1.64123998632469e-15	4.93011901740451e-13
Merged-chr11-76590878-2	chr11	76590378	76591378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13139.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.12835328004173	5.05213036363522	5.26972607018587	5.32435852507265	5.14722034977282	5.30216990076049	0.22387543818327	0.528589960710162	0.850585575598857
Merged-chr6-83125116-4	chr6	83124570	83125570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023547)	promoter-TSS (NM_023547)	-41.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	5.48431117798848	5.59225427629094	5.68016789820027	5.47687532302012	5.43522298664217	5.40575576998985	-0.270668872874978	0.406195763530952	0.780583800069297
Merged-chr12-85340182-4	chr12	85339711	85340711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-849.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	7.18960000149628	6.61521729568595	7.23442781876329	7.32870518171889	7.25122644962928	7.26919135707936	0.368531819139889	0.187134091326507	0.572089925767512
Merged-chr12-99640755-2	chr12	99640255	99641255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12781.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.58047733515014	5.56765901651806	5.49818349945082	6.38273246412746	6.31693711039274	6.40252463035028	1.41618996891397	1.52143934282843e-06	7.82599405503869e-05
Merged-chr2-165043189-4	chr2	165042701	165043701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8422.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	3.43025401648563	3.67318823749539	3.40017441747973	4.12839376633557	3.74899507722374	3.76269082281259	1.26823992128349	0.0307112892800569	0.211875048372023
Merged-chr3-148336319-4	chr3	148335815	148336815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	618320.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.17420239882024	3.62014496291338	3.68723302078831	3.78721585064442	3.67484305642967	3.58953119157971	-0.549000478583121	0.344355416003572	0.732985225622911
Merged-chr2-166687438-2	chr2	166686938	166687938	+	757.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	26394.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.08809747158668	4.74865875108071	4.78697528296292	5.54263724038424	5.51792183920613	5.05416627744568	1.05251799194958	0.00764539198150075	0.0832885278864512
Merged-chr2-102885532-4	chr2	102885042	102886042	+	834.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	16123.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.91056546888277	4.8857507540246	4.93126998393376	4.80613704835022	5.01892728473798	4.84817267734743	-0.0128859801026061	0.973122567069639	0.993943197210219
Merged-chr12-73287804-4	chr12	73287305	73288305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 1 of 15)	intron (NM_001037717, intron 1 of 15)	957.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	7.21169333506292	7.40284056022607	7.41744429411497	7.2717420064205	7.53284929889269	7.36824457366633	0.0815931432860294	0.732049457363537	0.931655063903171
Merged-chr14-54894478-1	chr14	54893978	54894978	+	1000.0	f0_balb.idr	exon (NM_019402, exon 1 of 7)	exon (NM_019402, exon 1 of 7)	335.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	7.729542923202	7.62538635149491	7.32497542228924	7.64397439736763	7.31584975968651	7.20018982901917	-0.253719670566322	0.329936485638216	0.721575368283182
Merged-chr5-120524912-2	chr5	120524412	120525412	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 10 of 13)	ORR1A2|LTR|ERVL-MaLR	13720.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	3.55759440214684	3.44069654733895	3.8285381608092	3.61225678214095	3.46777954956479	3.75346073928208	-0.0030738470163484	0.995758098242823	0.998961028701257
Merged-chr18-12141482-4	chr18	12140979	12141979	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 6 of 12)	intron (NM_024182, intron 6 of 12)	12629.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	5.43969389486156	5.29815955393498	5.36448464278363	6.0128026711615	6.35184496753304	5.67489407729292	1.25348845774795	0.000299181344720968	0.0069537098691459
Merged-chr2-165299918-3	chr2	165299395	165300395	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12057.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	4.53359724149273	4.34955450148524	4.75085349296503	4.33484509372269	4.526007171517	4.13540083432434	-0.48778064557034	0.299472355326768	0.696241066794673
Merged-chr2-75702019-4	chr2	75701520	75702520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	2643.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.23688715546307	7.38256590742031	6.88061138550322	7.37189926683821	7.44432786145181	7.01346351539144	0.156203114558342	0.569095029694161	0.8688875602138
Merged-chr5-122267347-2	chr5	122266847	122267847	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2887.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	3.15062959506458	2.95266779978192	3.14047202203988	3.21086673992783	3.19227234912399	3.09426107815408	0.38073768954722	0.558604663349684	0.864744077984264
Merged-chr9-90246492-2	chr9	90245992	90246992	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	24277.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.63514335554794	3.46172258146984	3.81718679048748	3.95834458657299	3.73267708284493	3.73435313000071	0.583268437969421	0.292871175326015	0.690053425164737
Merged-chr14-63106926-2	chr14	63106426	63107426	+	791.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15536.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.66875380393976	3.35712390816582	3.5571429871399	3.23231062915015	2.90726337547822	3.52415849877265	-1.14760762387506	0.0991021919701969	0.419759234012969
Merged-chr19-43929942-1	chr19	43929442	43930442	+	560.0	f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	10256.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	4.36377165912298	4.78779311743853	4.36354286043185	3.64536197786998	3.68733290723602	4.21030833211673	-1.91188972965033	0.000535921098435823	0.0110844467891717
Merged-chr10-80570916-6	chr10	80570279	80571279	+	943.086121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	6517.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	4.55844443775386	4.87964107710767	4.88860564252045	4.89971601776526	4.86076683892842	5.24453370085911	0.49076285693961	0.230278571831648	0.626162780047656
Merged-chr4-88407020-4	chr4	88406533	88407533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081184, intron 41 of 43)	intron (NM_001081184, intron 41 of 43)	31893.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	5.17741913022538	4.99863663095467	5.12890053395766	5.02640965630009	5.11960147935892	5.28718191668777	0.0852329701397062	0.814914846165652	0.956370078970016
Merged-chr19-33391991-8	chr19	33391497	33392497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167818, exon 1 of 7)	5' UTR (NM_001167818, exon 1 of 7)	298.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	7.62651129311121	7.85928774388095	7.34683465268611	7.28847310644091	7.09508800665459	7.04038951984274	-0.720289012936817	0.00519775890257391	0.0628078888709512
Merged-chr1-85987427-4	chr1	85986924	85987924	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-26369.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	5.67676521473503	5.44495770324844	5.56926917821826	5.96989590150607	6.47987442520224	5.90364497742453	1.04770804603655	0.00197193916746617	0.0306350101281786
Merged-chr4-59832973-2	chr4	59832459	59833459	+	597.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	27309.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.22077005391471	3.49494280522027	3.57451535981415	2.97186772318605	3.07261323684843	2.96919374267555	-1.84829517162935	0.00768816487034556	0.0836231140564332
Merged-chr7-123379237-2	chr7	123378737	123379737	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	MIR|SINE|MIR	1255.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	2.76526074334023	2.68568349181902	2.88776714674901	2.59029414820946	2.43987751713993	3.07123972503365	-0.270951384219211	0.74125224572539	0.934802565252866
Merged-chr2-173740120-3	chr2	173739622	173740622	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2551.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	6.53053380430817	6.57613262226541	6.03866999846201	6.57656161611778	6.44250250535859	5.77490679012058	-0.149098796739251	0.673944618196395	0.911756504201051
Merged-chr13-52626876-2	chr13	52626376	52627376	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	29994.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.48671125959994	2.44569834749694	2.67877446785415	2.34612249057229	2.42463028598047	2.23800318130499	-1.22858685304371	0.157322441640978	1
Merged-chr13-112440097-4	chr13	112439624	112440624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23946.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	4.59535887882738	4.37803086455806	4.50204124808484	4.34517388105486	4.60025570488668	4.3028312056473	-0.151230058778073	0.734910573969547	0.932617455907478
Merged-chr7-25703219-2	chr7	25702719	25703719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15834.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	5.94850331400528	6.09241068671275	6.32739669006763	5.95966790503877	6.12980619567708	6.55627291147985	0.17880244502814	0.579915470844077	0.87265768149008
Merged-chr11-23699902-4	chr11	23699399	23700399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	33923.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	4.76025135962236	4.72543489563694	5.02138343881938	5.47810858809873	5.26425437779397	5.45938091932005	1.19268365925371	0.00130573732891019	0.0222047397637357
Merged-chr9-86468678-2	chr9	86468186	86469186	+	568.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	1532.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	3.60080124558491	3.62619035463813	3.48348324696407	3.57398868008344	3.6197682264036	3.44035567656525	-0.0827389359394676	0.884312156697872	0.973466734537782
Merged-chr8-73293863-4	chr8	73293357	73294357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	MTD|LTR|ERVL-MaLR	59683.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.83976180423464	3.72103073545487	3.71809138931656	3.81624485872561	3.70200362654692	3.98598709699403	0.222297752481216	0.675086327691312	0.911995407960456
Merged-chr12-3305457-2	chr12	3304957	3305957	+	997.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	B2_Mm2|SINE|B2	4512.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	4.25140496630165	4.08257954389286	4.60510248509025	4.31841868117861	4.26290943949053	4.07039144983886	-0.25244966552928	0.606705949216252	0.884254358240743
Merged-chr13-113795879-2	chr13	113795379	113796379	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	1371.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	3.38905616738858	3.2756416903708	3.3610520481328	3.05814526327396	3.15635105557693	3.32226205401831	-0.675719480172246	0.283238864790911	0.681187914374303
Merged-chr3-98042513-4	chr3	98042006	98043006	+	751.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	28968.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.93852982162476	5.94066746595687	5.96961853763208	5.97217415033139	5.98902468977493	5.67141997393712	-0.0902860483002379	0.766480035979558	0.942467872936068
Merged-chr5-136172541-2	chr5	136172041	136173041	+	876.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1885.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	6.49797917892364	6.59758903275307	6.7295114664738	6.52418573760198	6.58687278135954	6.81741296016895	0.0568948012700358	0.831226828192628	0.960444904168444
Merged-chr19-21276627-3	chr19	21276171	21277171	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 2 of 5)	intron (NM_009551, intron 2 of 5)	4393.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.8454273154082	3.84644974196182	3.8467041620983	3.42813234810653	3.4156912933168	3.4368171491716	-1.50410226447605	0.00792938354129396	0.0855645371163258
Merged-chr7-145109642-1	chr7	145109142	145110142	+	796.0	f1_c57bl6.idr	Intergenic	Intergenic	98477.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	3.11794405731512	2.94919948998116	3.07799059997266	3.16827025615259	3.24991053814502	3.150573156242	0.631225071129496	0.330853958850033	0.722226411767471
Merged-chr2-79253503-4	chr2	79253006	79254006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1920.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.13130019962877	4.98160869743209	5.10939358133759	5.20518009985946	4.99844610608575	5.10600570714234	0.0608855281135584	0.867511838340701	0.96935413537256
Merged-chr10-49074947-3	chr10	49074423	49075423	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	713014.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	3.31500454922058	2.83505669500201	3.15292513825349	2.89426794812769	2.66154880527024	2.73339955718658	-1.74481005316744	0.0235439855550228	0.179844666305181
Merged-chr5-148928810-4	chr5	148928320	148929320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153572)	promoter-TSS (NM_153572)	-173.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	5.36710124623474	5.405520498371	5.25369461993442	5.30853495091952	5.08145787816272	5.31750778872472	-0.234598622625884	0.502110089711502	0.836294013865941
Merged-chr5-137782939-2	chr5	137782439	137783439	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 2 of 3)	B1_Mus1|SINE|Alu	3762.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	2.52372366926732	2.41556188980733	2.70276842241673	2.46541444397891	2.30944560889049	2.71658315209887	-0.270525927570793	0.744278426848072	1
Merged-chr2-38221180-2	chr2	38220680	38221680	+	935.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	intron (NM_146122, intron 2 of 21)	66204.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	3.3280762127056	3.50556176516893	3.55849905634417	3.3766614646144	3.44589275126691	3.46924556846055	-0.126307297747539	0.829320970749897	0.960024094417547
Merged-chr15-31612670-2	chr15	31612170	31613170	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	B2_Mm2|SINE|B2	10554.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	2.63204560732504	2.64838977875529	2.4625955956688	2.59296373964592	2.56843826936384	2.78810016923958	0.347897946055131	0.655869905428199	1
Merged-chr9-21166942-4	chr9	21166451	21167451	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	1237.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	6.28633242661774	6.32738021451043	6.19158933831568	6.59979928813103	7.00073271050083	7.0102378579243	0.971982913549052	0.000494930356365749	0.0104285047081492
Merged-chr15-34453197-3	chr15	34452705	34453705	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173421)	promoter-TSS (NM_173421)	-107.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	2.01060606673689	1.9796979410955	2.23388585437421	1.96396258424102	1.85092000529111	1.91723944492035	-1.41196047226677	0.150897463208955	1
Merged-chr6-72389697-4	chr6	72389205	72390205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	962.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	8.0707413642636	8.30839112299369	7.94825524272254	8.14871858047459	8.24405955996242	8.1974029317411	0.104574419826193	0.636692647022717	0.897216146010233
Merged-chr11-59545245-4	chr11	59544696	59545696	+	690.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	B3|SINE|B2	2510.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	5.33598415105613	4.83814502735425	4.91264216540786	5.26159534952275	5.19790947486127	5.62690253510444	0.631806237886548	0.114558837997934	0.452032914562748
Merged-chr2-122161702-3	chr2	122161179	122162179	+	704.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	979.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	3.02572592692485	2.91575175592526	3.09258946994093	3.46371719492272	3.50750908908419	3.28702230502777	1.82575890543624	0.00554249773609981	0.0659098996620117
Merged-chr1-60899362-3	chr1	60898829	60899829	+	975.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9696.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	3.79315746823589	3.84973486313906	4.19165222440557	5.73435467202669	5.57976690579436	5.56188396073449	4.48193131604001	1.50801743608338e-17	6.85678223068992e-15
Merged-chr9-111063872-2	chr9	111063376	111064376	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6358.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	5.28181631659487	5.00581315721287	4.98491307477649	4.48099027832531	3.72228668172463	4.04111072384487	-2.47282511527649	3.42391695453755e-06	0.00015898285823279
Merged-chr15-59719567-4	chr15	59719064	59720064	+	854.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70910.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.51158665096836	3.69829691628404	3.65362895782257	3.37410328158307	3.16279040333533	3.62178452634792	-0.868789569950699	0.156627308047951	0.527466611949728
Merged-chr4-33244608-2	chr4	33244108	33245108	+	996.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033225)	TTS (NM_001033225)	4179.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	6.02368238593883	5.36244712636467	5.85426250773316	5.93774647539473	5.97061134811685	6.05307512968626	0.372009447065082	0.278864073936772	0.676276467142635
Merged-chr5-65973394-4	chr5	65972903	65973903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081104, intron 4 of 4)	LTR84a|LTR|ERVL	6279.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	6.48230409956366	6.03023514210602	6.22810447666465	6.44540467343836	6.27456982130213	6.04453367411613	0.0152916362168101	0.96039651767242	0.990380695859216
Merged-chr13-60670793-4	chr13	60670306	60671306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	68595.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.90053671078959	7.96396492725152	7.41081697690883	7.5933767433042	7.92642287325299	7.55359132215181	-0.116380871522841	0.662941899551012	0.90692994613967
Merged-chr17-57339754-4	chr17	57339238	57340238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18948.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.87026643052858	6.0646456832879	6.23798155942861	6.67226118918903	6.91063145591119	6.76700483071031	1.19640048984112	1.92840542191786e-05	0.000707178309153554
Merged-chr11-93819631-1	chr11	93819131	93820131	+	875.0	f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	66135.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	2.75238270349498	2.71031120834082	2.8842261092121	2.59850345790039	2.84571633677502	3.06900354705781	0.333133253708123	0.657447445640949	0.904798742244684
Merged-chr7-45151465-2	chr7	45150962	45151962	+	714.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	L1MC5|LINE|L1	-2841.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	5.23334893934929	5.38399346244569	5.84728812348972	5.57676465405733	5.50429386630757	6.09502979387371	0.443183747085463	0.249548507775832	0.646464266345312
Merged-chr7-137420690-4	chr7	137420143	137421143	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9887.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	4.37378428259725	4.00945433977986	4.43953138426585	4.30863738667606	4.35866759281408	4.29191160852666	0.109730587799212	0.816120370681291	0.956616423430214
Merged-chr17-31083451-2	chr17	31083006	31084006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	MTB_Mm|LTR|ERVL-MaLR	25812.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.40246117437792	4.4108935735082	4.45647190373064	4.46019945752464	4.51667950381284	4.43769355814974	0.136281345161867	0.749772345934475	0.93745630986217
Merged-chr10-69307216-6	chr10	69306682	69307682	+	882.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45730.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.63054972565017	4.43442727454041	4.36364350275227	5.16637053372996	5.14928012138629	5.21143924003215	1.54595902436534	0.000130965867734756	0.00356240860492761
Merged-chr10-39958486-2	chr10	39957986	39958986	+	674.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113388, exon 4 of 4)	3' UTR (NM_001113388, exon 4 of 4)	1667.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	3.45942635088921	3.76399558793509	3.74942033823783	3.66557560801954	3.72764075112618	3.43671484885434	-0.1383335183297	0.811407746479649	0.955269971406237
Merged-chr9-21594309-2	chr9	21593809	21594809	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178619, exon 2 of 2)	3' UTR (NM_178619, exon 2 of 2)	-1478.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	4.05317408159879	3.85388284972211	3.66533350269978	3.78183320260928	3.87171089254823	3.56330656045805	-0.382917121359591	0.493724195746566	0.831564943013182
Merged-chr7-44246655-4	chr7	44246141	44247141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025880)	promoter-TSS (NM_025880)	-81.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	8.08100864847045	8.20789970975027	8.14971258079376	8.01088358220702	8.03008627314199	7.95566880880335	-0.207405378078167	0.31662936973143	0.710660560944371
Merged-chr18-84952095-4	chr18	84951600	84952600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-576.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	6.94282228548105	7.30486176607812	7.42431759690745	7.16511971399905	7.58707111213803	7.19206532730129	0.151819572180668	0.5823737338051	0.873702353685426
Merged-chr11-120467605-4	chr11	120467101	120468101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008244)	promoter-TSS (NM_008244)	-1.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	6.40132925690459	6.43476071007324	6.4377761752496	5.88304995784194	6.16514626787805	6.25241230485704	-0.528454773134761	0.0642909671325675	0.330380607285491
Merged-chr9-111059264-4	chr9	111058813	111059813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1795.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	7.63601791817539	7.36547541310591	6.93582938891435	7.28051350296153	7.47491850133431	7.28647294525656	-0.00200011776120206	0.994254400011787	0.998918571480046
Merged-chr17-71250881-4	chr17	71250382	71251382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46228.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.95654260362913	6.95222925777184	6.6343086699739	6.04361615138561	6.0013683400745	5.7005994164173	-1.51570982597818	2.79458635286286e-07	1.75761104496608e-05
Merged-chr2-101174854-3	chr2	101174327	101175327	+	613.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-449921.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	3.91454116381049	3.70004417248916	4.09906566720678	3.45335971984606	3.85916035504342	3.79373387428635	-0.610464744403963	0.285646231636549	0.683152802436807
Merged-chr12-35885356-4	chr12	35884840	35885840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40281.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	5.45926025737623	5.78453193144701	5.69249127449148	5.11000345590015	5.21733482622069	5.6528198652037	-0.606827785096549	0.0953603775964675	0.411621121341241
Merged-chr6-136471036-3	chr6	136470476	136471476	+	736.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47875.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.50693385575034	3.22492296486742	3.68587870270193	3.5127851165666	3.26839217657348	3.33174860847306	-0.398748798737937	0.523102500647883	0.847994662137535
Merged-chr5-62616109-3	chr5	62615611	62616611	+	936.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 28 of 32)	intron (NM_178407, intron 28 of 32)	150066.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.20136138986462	3.22861681184938	3.10686853189829	3.21403164329823	3.22796443281685	3.40663700815508	0.403241668285563	0.520679054371556	0.846662720861138
Merged-chr12-100110209-4	chr12	100109715	100110715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2116.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	7.76218124663945	7.98534510236593	7.92293759942633	7.59934635093374	7.9799053825102	7.4421049654145	-0.269640379476737	0.287884162824732	0.685249461347377
Merged-chr5-66145323-1	chr5	66144823	66145823	+	653.0	f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	5655.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.42494097282512	4.27405960275698	4.37577116958139	5.05673272404409	4.81951767497754	4.66461564523041	1.21153770934003	0.004542004440759	0.0572276053159714
Merged-chr15-76198800-4	chr15	76198315	76199315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	591.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	4.04460115088239	3.66023662218329	4.01597182072096	3.84842861957885	3.37744544300021	3.51638622764553	-1.05844697268703	0.0754703707294103	0.36172895840004
Merged-chr15-6562522-4	chr15	6562006	6563006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17341.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.33805108699322	6.81676641844554	6.57311903635834	7.01658045344889	6.95377316033056	6.98256349392973	0.0335364643838975	0.910673143443223	0.979933152968869
Merged-chr4-147522306-2	chr4	147521806	147522806	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30971.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	2.84288849429346	3.10899381181547	3.07279729286916	2.92490802413311	2.84053121056513	3.02900246186752	-0.394214734276779	0.569631089343107	0.8688875602138
Merged-chr1-166003437-4	chr1	166002938	166003938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-804.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	5.57218368714146	6.36525923201423	6.02815776890753	5.84397327878389	5.91122566248438	5.66223021431066	-0.383203517589815	0.285466130491177	0.682971499637996
Merged-chr7-143042594-1	chr7	143042094	143043094	+	810.0	f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-10156.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.94761534773694	6.19897393735877	6.09016046841485	6.07937862620618	6.01595731377468	5.86911362718397	-0.15119967397523	0.609690933315689	0.885308220347415
Merged-chr5-143489395-2	chr5	143488895	143489895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	24902.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	5.80630773785617	6.0321565657861	5.66994053041883	5.65418993694445	5.48483908548138	5.53244637139264	-0.543232556429918	0.0931991526535191	0.40657919757719
Merged-chr4-59188748-3	chr4	59188237	59189237	+	799.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-813.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	6.15243370462398	6.22072373946774	6.25095196917428	6.33568214908776	6.19615097530088	6.38739548626937	0.160405586386074	0.561861851656718	0.865580593452079
Merged-chr3-21955866-4	chr3	21955376	21956376	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120776.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.54249717505918	5.94586586196507	6.00800271144072	5.66680715641923	5.48133017271	5.9373474521544	-0.264644010746296	0.443988563106307	0.803903618750713
Merged-chr7-80386042-1	chr7	80385542	80386542	+	591.0	f1_c57bl6.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1904.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	4.12419924865557	3.95453790181029	4.26916119599386	4.25553847310246	4.10364296683773	4.29299759779749	0.281292574983425	0.556708943396848	0.863728771832801
Merged-chr14-47276958-4	chr14	47276468	47277468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172598)	promoter-TSS (NM_172598)	-111.0	NM_172598	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	7.91083231548839	8.00214629163232	7.76418425843559	7.68607860186862	7.83439462583385	7.61039281753125	-0.260975703319223	0.245329131311149	0.642393755173178
Merged-chr15-6705761-4	chr15	6705261	6706261	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2620.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	4.92792156733437	4.86596667466673	4.50508309584099	4.5083770711711	4.671487922058	4.89265440220425	-0.221438942368763	0.605271058334007	0.88350631923823
Merged-chr6-87809804-4	chr6	87809340	87810340	+	963.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-83.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	8.0434141729968	8.12020285925771	7.90310036524711	7.83958889932801	8.15748553588563	7.99015943854427	-0.032744288920408	0.884302474685808	0.973466734537782
Merged-chr12-31499785-7	chr12	31499243	31500243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134048)	promoter-TSS (NM_134048)	-127.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	7.31419423838892	7.97143318598851	7.72852760701029	7.53216958369497	7.54139510403705	7.43210913175972	-0.286806131570978	0.281132758692783	0.679303478490796
Merged-chr12-84847684-4	chr12	84847202	84848202	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28100.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	5.51402856738738	4.90389780827006	5.38491229805123	4.80215358611492	4.51345246495963	4.86431999287122	-1.222604390394	0.00372807778775625	0.0493757231967544
Merged-chr13-66933056-7	chr13	66932533	66933533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	39.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	7.70003447631148	7.99054281081651	7.82399255687918	7.85528430003645	7.70771864106134	7.62369108774059	-0.158943971725277	0.487600653979567	0.828533944913187
Merged-chr11-109363526-4	chr11	109363064	109364064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038097)	promoter-TSS (NR_038097)	90.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	8.88731822276917	9.04027465432131	8.50259355559511	8.86443387736882	9.12339560963871	8.47098516206428	0.02655169066178	0.92049136880747	0.982382709366944
Merged-chr15-78802985-4	chr15	78802473	78803473	+	903.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130859)	promoter-TSS (NM_130859)	69.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	3.43200729942747	3.18456225112036	3.23887564569947	3.47105116188605	3.22318949672013	3.36920633066198	0.251623825838226	0.686085189750812	0.91659539440007
Merged-chr1-121567985-4	chr1	121567472	121568472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025860)	promoter-TSS (NM_025860)	8.0	NM_025860	66942.0	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	5.71058523156772	5.71658098757637	5.66133223063098	5.64904585537359	5.44272008149891	5.26832215793097	-0.428572433625597	0.195164158597996	0.582844709949827
Merged-chr14-63138410-2	chr14	63137910	63138910	+	633.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007798, exon 7 of 10)	exon (NM_007798, exon 7 of 10)	15948.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.93928649237085	3.84186530195332	4.47337774858363	4.06243379861385	3.97630528212487	4.38550483294582	0.116269428140854	0.829310148121046	0.960024094417547
Merged-chr15-27925439-3	chr15	27924897	27925897	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	100451.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.07536864499522	6.24679717286017	5.52082686919965	5.89194720284215	5.89794862709205	5.55380387877918	-0.347648878116588	0.329700839526961	0.72150402270624
Merged-chr14-20307789-3	chr14	20307284	20308284	+	954.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359868, exon 6 of 10)	exon (NM_001359868, exon 6 of 10)	13094.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	4.09824112157139	3.9558018368485	3.90893039266375	4.16513446180613	3.86379515649543	3.92777446248483	-0.00825490057368625	0.98700414089205	0.997161899445921
Merged-chr2-75792915-4	chr2	75792394	75793394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39283.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.24706456415664	6.17414901723589	6.1075978893	6.40636823261732	6.44062209687604	6.53735197026749	0.45811507420463	0.0920522570472131	0.404179538026878
Merged-chr18-35553373-4	chr18	35552870	35553870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038073)	promoter-TSS (NR_038073)	-40.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	4.92201579176102	5.00159527013988	4.45174527328025	4.91834994901696	4.74626054235083	4.26694994307878	-0.322576961166953	0.501432421106593	0.83570061481868
Merged-chr1-14596192-4	chr1	14595697	14596697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	159769.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	3.78713312558739	3.66934872719035	3.81347741137569	3.53193887825759	3.72989028714745	3.78323642608641	-0.234567798085498	0.665675046235928	0.907880610488534
Merged-chr14-47186712-4	chr14	47186197	47187197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	2716.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	4.53342919454892	4.96826111034346	4.95549784131925	4.30110125979261	4.38790234574561	4.495708977158	-1.06023464094686	0.0162405846068779	0.14026848286995
Merged-chr15-34238685-4	chr15	34238149	34239149	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033521, intron 1 of 6)	CpG	623.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	7.09112605204021	7.19151936468809	6.56544949489545	6.75694541364596	6.65851171636593	6.74499273254243	-0.419479051618278	0.139760734616373	0.499515106995368
Merged-chr12-76371493-1	chr12	76370993	76371993	+	865.6666869999999	f0_balb.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1227.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	6.77743557772465	6.69791383134576	6.62028603756255	6.72305130202717	6.93123992528391	7.01901611920137	0.296331053413739	0.248478071943813	0.645600731000806
Merged-chr2-73492231-3	chr2	73491688	73492688	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	Lx7|LINE|L1	-6435.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.20238733922098	4.72786436892363	5.01981271282266	4.92419321198448	5.06897093232943	4.65617162852647	-0.199871399086643	0.631601838121303	0.895227420941953
Merged-chr19-41343319-2	chr19	41342819	41343819	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	41751.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.54380540760926	5.54247321227479	5.81216816009011	5.90706021812982	6.01651881983335	6.15982260963193	0.715246388039779	0.0216544878631917	0.170256697167198
Merged-chr5-36574342-3	chr5	36573849	36574849	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	MIRb|SINE|MIR	8048.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.99016704720269	6.94179419954315	6.83758555549975	7.0981382636969	7.46453199938915	6.81812638872319	0.364703776121663	0.192060758299202	0.579000455655954
Merged-chr19-5875305-4	chr19	5874793	5875793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026169)	promoter-TSS (NM_026169)	-85.0	NM_026169	67457.0	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	5.66373323631847	5.39538450439185	5.42034673705453	5.59995147680099	5.49650275204843	5.68095782547781	0.160477095825563	0.628783807808247	0.893897882797003
Merged-chr4-132534058-2	chr4	132533558	132534558	+	758.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007512, intron 1 of 3)	intron (NM_007512, intron 1 of 3)	1356.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	4.96766428654709	5.37462148963334	5.41527172320734	5.2445962011604	5.78702499508191	5.71940093527717	0.663310161990111	0.0819471386938219	0.378688077109604
Merged-chr5-21056719-3	chr5	21056220	21057220	+	946.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-809.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	7.28010080616413	7.46140839898867	7.01728541513414	7.1720478415751	7.39719081572317	6.86799146393406	-0.146351828144237	0.597257450539197	0.880302510795789
Merged-chr11-76630209-3	chr11	76629684	76630684	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42286.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	5.62074277367421	4.92736533759196	5.45150759090182	5.85160166146297	5.68798168135651	5.73477009542159	0.738765104562558	0.0484733718155567	0.279316240097545
Merged-chr17-87264142-10	chr17	87263622	87264622	+	764.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139295, intron 1 of 3)	intron (NM_139295, intron 1 of 3)	1825.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	6.53662852096457	6.6200989593943	6.46672869130139	6.79646572803764	6.69931386563376	6.41171988868001	0.171424603205631	0.527075700051169	0.849775525089278
Merged-chr10-40229547-4	chr10	40229063	40230063	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17416.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	7.12031677003026	7.17359906082694	6.6868874554814	7.50260027423993	7.57012045148241	6.83154675751634	0.496701712190942	0.108239205812813	0.439439757112793
Merged-chr1-91398236-2	chr1	91397736	91398736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023343, intron 1 of 11)	CpG	587.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	6.10512797357309	6.18925265361774	6.21800051301654	6.21392118074374	5.96069543625002	6.132514422068	-0.116037358000699	0.686140807945756	0.916596830431285
Merged-chr17-51790921-2	chr17	51790421	51791421	+	770.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	21133.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	2.99117251127448	3.38001447084445	3.09102945101459	3.38863251547841	3.19144601109564	3.2252069238927	0.412994583228926	0.534927849839934	0.85325939862899
Merged-chr15-59390466-4	chr15	59390004	59391004	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	B1_Mm|SINE|Alu	16306.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.95924301536937	5.09994934937602	5.0731277682689	5.02121184686593	5.03796256894664	4.96112900938558	-0.0731709860934884	0.841909035272847	0.963002495523594
Merged-chr18-64516612-4	chr18	64516124	64517124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-67.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	8.17398933269421	8.65430436472722	8.01174096105074	8.23903256364268	8.58770892849712	7.98194792968738	-0.0230720358198742	0.935102707566315	0.985772714030962
Merged-chr9-32575308-2	chr9	32574808	32575808	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33856.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	2.54952055233548	2.55900086342203	3.4215878283822	2.80446667101022	2.55366840774772	3.03590454868663	-0.454472620776884	0.604793241621262	0.883226183914895
Merged-chr16-8636817-2	chr16	8636317	8637317	+	946.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	884.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	6.24917607777434	7.05536067711405	6.64902722193537	6.65798083440495	6.74991672579989	6.34016958336627	-0.1551374783296	0.63755089703141	0.89735407749672
Merged-chr12-105784579-4	chr12	105784076	105785076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347440)	promoter-TSS (NM_001347440)	-121.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	7.96253203496442	7.87727681245446	7.47001714927126	7.87953883534425	7.49587521078533	7.74894870089294	-0.114832386563068	0.655581118283538	0.90429384180742
Merged-chr5-43248020-4	chr5	43247518	43248518	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177379, intron 3 of 10)	L3|LINE|CR1	-12664.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	5.04908014548436	5.11489206082438	5.11968921298703	5.13132502852512	5.2943968060065	4.93137233300214	0.0981041226161364	0.790806858550842	0.949611895664764
Merged-chr3-96104422-4	chr3	96103892	96104892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025614)	promoter-TSS (NM_001025614)	-135.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	6.58079739869765	6.56448935472764	6.21325418624998	7.01326238235787	7.04898080961742	6.61353611898314	0.692361320312095	0.0159694997831872	0.138748056589688
Merged-chr1-60097684-4	chr1	60097125	60098125	+	885.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139150)	promoter-TSS (NM_139150)	282.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	5.97391564538707	6.36548417253544	6.0096752728446	6.19067045603499	6.2449697587129	5.51167797660662	-0.16439944085886	0.645001129507989	0.900400194344542
Merged-chr7-128220194-2	chr7	128219740	128220740	+	720.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-13874.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	5.23682009485379	4.80701752486063	4.67160999172918	4.92029104975384	4.84130756906027	5.07973330287233	0.0117083845711053	0.977538652292514	0.994875561779342
Merged-chr8-43368742-3	chr8	43368206	43369206	+	896.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61697.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	2.62304498545519	2.5535688225571	2.67111600006779	3.09526136836949	2.82579379212763	2.93538993381766	1.84982798563593	0.0150874532782334	0.133286359727627
Merged-chr8-83655361-1	chr8	83654861	83655861	+	567.0	f0_balb.idr	intron (NM_018771, intron 1 of 6)	B4|SINE|B4	2683.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	4.4144109632161	4.37402994371273	4.67651408530708	4.86735614053274	4.7311582511372	4.92407163627657	0.843006760955121	0.0428443976136586	0.259538526840893
Merged-chr4-126103850-4	chr4	126103353	126104353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-104.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	8.05774525938235	8.20767320897698	8.00259740634209	7.85979073786592	8.01731543871854	7.80441775287857	-0.275409919718882	0.208337625808384	0.599216583593528
Merged-chr15-9628681-2	chr15	9628181	9629181	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-98805.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	3.25881237334886	2.98498931361636	3.37020489094437	3.40106349270888	3.10841135590168	3.49341337575203	0.519227332874118	0.432609099018434	0.797386699146392
Merged-chr1-44100944-2	chr1	44100444	44101444	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356297, intron 1 of 5)	intron (NM_001356297, intron 1 of 5)	1497.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	3.41166156065243	3.26977530756096	3.20898044191286	3.6298849061014	3.50231038591563	3.62309608634934	1.05446408828627	0.0787832218122083	0.370868463259694
Merged-chr3-38187678-4	chr3	38187176	38188176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20443.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.65164837511428	4.59547983171357	4.68875675619679	5.04080719924095	4.68187536340221	4.83243316490319	0.492554681925911	0.225855700534997	0.620790596836024
Merged-chr9-84544905-4	chr9	84544413	84545413	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-229485.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	3.98022540158696	4.02818430711614	4.09170474163398	5.51982416167691	4.88478759869658	4.56810521633074	2.5499497344628	4.40018437632422e-07	2.62772084587515e-05
Merged-chr17-73052094-1	chr17	73051594	73052594	+	655.0	f1_c57bl6.idr	Intergenic	Intergenic	-55891.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.06987678205941	3.1282350294115	2.86516436433014	3.22711147889549	3.03665932683742	3.24452865006942	0.601744551237637	0.376846884814502	0.759447323120003
Merged-chr12-84408228-4	chr12	84407764	84408764	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028377)	promoter-TSS (NM_028377)	765.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	5.82539907257088	6.0682095219679	5.70371611372184	5.75313532930257	5.67293984875563	5.56728322447791	-0.385373183485005	0.22794800307467	0.622981752321771
Merged-chr2-5064056-4	chr2	5063574	5064574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181848)	promoter-TSS (NM_181848)	43.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	7.60559486631678	8.02034231442554	7.03266973958614	7.6844970364713	7.79292080070838	6.96898393351896	-0.123567662934173	0.724045191230935	0.929178878081464
Merged-chr7-28432556-4	chr7	28432042	28433042	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	3649.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	6.08476709410833	5.93834014520599	6.05798815467867	6.01619776624227	6.21483358892478	6.62769736144422	0.464664297554769	0.139714335435072	0.499456539907264
Merged-chr9-114787928-4	chr9	114787419	114788419	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.57650019898971	4.74006549777518	4.95023877885099	6.2165626991657	6.44665863891171	6.22394601781788	3.03263540997082	9.8772446772286e-18	4.61722345563392e-15
Merged-chr5-115566027-2	chr5	115565527	115566527	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	764.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	3.53298721966348	3.34342337295323	3.43658685057045	3.40130477763387	3.38878611603752	3.45243935299945	-0.105204641163632	0.857582879710979	0.966767080388296
Merged-chr11-86652874-4	chr11	86652381	86653381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18394.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	6.48801010343387	6.68949795545548	6.42469523943644	6.5389341401212	6.74431071154211	6.5751040398107	0.131267120799	0.625505908202481	0.892513881101067
Merged-chr18-62231578-4	chr18	62231074	62232074	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51474.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.99743013408577	3.71012495734895	3.86901958023568	4.15645007454418	4.13377711237041	3.72102666800544	0.490144486154227	0.361856422341921	0.747501221207214
Merged-chr11-98797656-1	chr11	98797156	98798156	+	542.0	f1_balb.idr	promoter-TSS (NM_001361934)	promoter-TSS (NM_001361934)	-998.0	NM_001361933	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	3.61550614059876	3.79155692129213	4.01747470556892	3.96687070431146	3.88388992546114	3.9447597524429	0.380346467918008	0.470254545910152	0.819394137837651
Merged-chr9-122122316-4	chr9	122121803	122122803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	4844.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	5.61994300025159	5.3439427334755	5.332582739553	5.53718533722368	5.1932752090129	5.2324224861432	-0.222662188528937	0.533406601046511	0.852457858765356
Merged-chr6-89336467-1	chr6	89335967	89336967	+	799.0	f0_c57.idr	intron (NM_008881, intron 10 of 31)	intron (NM_008881, intron 10 of 31)	26146.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	2.61795715486775	2.64340146717994	2.83728767221859	2.74005517264787	2.47266623553624	2.79146831830355	-0.154800125077742	0.841048535236413	0.962832831784718
Merged-chr11-75630250-2	chr11	75629750	75630750	+	934.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-770.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	6.75839915140526	6.61814963484959	6.40042126635644	6.48355062408198	6.48600554335215	6.36203903669891	-0.257222146528468	0.344974476344972	0.733477353461415
Merged-chr6-140619385-3	chr6	140618890	140619890	+	684.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3273.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.29430120697689	4.95248507050884	4.87630385698129	5.47773626455612	4.94709090272824	4.82110581075197	0.123032005647089	0.772258129851089	0.943716660313239
Merged-chr3-32736874-4	chr3	32736407	32737407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	-152.0	NM_029017	74600.0	Mm.288960	NM_029017	ENSMUSG00000037531	Mrpl47	4833424P18Rik|CGI-204|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1	mitochondrial ribosomal protein L47	protein-coding	6.64592102436083	6.89478302620147	6.86758426845531	6.83641566031846	6.80212260134777	6.7300768969126	-0.0201713659562411	0.936815091036139	0.986037792257163
Merged-chr1-134561552-2	chr1	134561052	134562052	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_152895, intron 1 of 26)	CpG	1374.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	3.64407496245407	3.4327462655672	3.39549490888208	3.49242309687668	3.18361775367947	3.52263232645873	-0.363531901156397	0.553641254774097	0.862378208638182
Merged-chr17-31994331-2	chr17	31993831	31994831	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028902, intron 6 of 7)	L1MEd|LINE|L1	40177.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	4.72856501212789	4.47656000973604	4.65282565758566	4.61346446631638	4.19861861526469	4.71846311523127	-0.255254189595008	0.574231408563204	0.87055929750801
Merged-chr3-59341810-4	chr3	59341297	59342297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	Lx8b|LINE|L1	2459.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	4.83667938756758	4.97296238167164	4.86530863075561	4.59913339213098	4.36601164563166	4.74450556410823	-0.771785410650505	0.0620471477059389	0.323505173652219
Merged-chr16-95730017-2	chr16	95729517	95730517	+	586.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27610.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.1790284035022	4.21951396703751	4.07560407705313	3.99987620579095	3.84214530835958	3.78355203104195	-0.843344200146331	0.0915430393337304	0.402843395184502
Merged-chr14-50799995-3	chr14	50799497	50800497	+	823.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001111119	239083.0	Mm.343880	NM_001111119	ENSMUSG00000071470	Ccnb1ip1	Gm288|Hei10|mei4	cyclin B1 interacting protein 1	protein-coding	2.61026259913089	2.4031252427376	2.74463731582188	2.40059334843753	2.2981136837975	2.57731049962043	-1.00253685955559	0.230879811400309	1
Merged-chr10-57727858-4	chr10	57727359	57728359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-57064.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	8.20147911189351	8.52220155659298	7.96384761915929	8.04628914839349	8.80965240095359	7.97993666505717	0.130236823556572	0.67208326022448	0.910719060610024
Merged-chr7-27587893-2	chr7	27587382	27588382	+	664.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3670.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.40092470543663	4.25057312996233	4.78431857715684	4.78291841034485	4.7933304809283	4.57898317592793	0.586418413592764	0.187334246722552	0.572271506774537
Merged-chr2-30205820-4	chr2	30205341	30206341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	6.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	6.67839566873054	6.80207154066452	6.34990699420686	6.68511364047913	6.48786836741215	6.50648675893809	-0.115862120170339	0.678972186809848	0.913553914280182
Merged-chr13-107721191-2	chr13	107720691	107721691	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33794.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	2.4441983019511	2.40787197079405	2.86861314689805	2.45903734271511	2.26367930939928	2.6525530156949	-0.702609130702916	0.415769702751588	1
Merged-chr2-160627362-4	chr2	160626959	160627959	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18438.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.03656230532208	4.81798784506358	4.70318610997163	4.67974176549604	4.62232678814283	4.76967717046422	-0.415653268748362	0.30304662739735	0.699742029428313
Merged-chr11-23256434-4	chr11	23255945	23256945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134014, exon 2 of 26)	5' UTR (NM_134014, exon 2 of 26)	404.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	8.58079167405257	8.66775372291776	8.42116202785113	8.65000589944101	8.79522318369534	8.34429969833503	0.0729023531764774	0.74900876102804	0.937125343772966
Merged-chr7-34176462-3	chr7	34175963	34176963	+	867.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7934.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	4.4048688246314	4.12270078987418	4.32894518027277	4.15640382276655	4.257330811272	4.26378543941286	-0.169180692066835	0.715290310000445	0.926364539463507
Merged-chr4-128726942-2	chr4	128726442	128727442	+	810.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-629.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.27322797589697	6.28253731975736	6.20577159937582	6.32177887428521	6.74930499120213	6.22357217434502	0.346322686431526	0.247408483232142	0.644290344040439
Merged-chr12-55491280-4	chr12	55490809	55491809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 3 of 6)	exon (NM_010907, exon 3 of 6)	1338.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.74853517499534	8.7344003182851	8.44678541519586	8.8744830566204	9.22259313640805	8.53605791991503	0.359408171803167	0.159023696086891	0.531013709888191
Merged-chr14-120263599-4	chr14	120263098	120264098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12071.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.86278844597818	7.02062587871152	6.71522533929883	6.79731558303941	6.85208092297477	6.9523967430608	-0.0223693940144475	0.929909375890362	0.984326014516147
Merged-chr17-65737836-4	chr17	65737321	65738321	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	34931.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.03399832646487	7.0626478759344	6.95600831296316	6.7657024416487	6.96563860472246	6.53310976749906	-0.369584398766448	0.160236385488087	0.532955556769108
Merged-chr9-89210552-4	chr9	89210075	89211075	+	706.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026829)	promoter-TSS (NM_026829)	-615.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.71602106051688	4.37969992997861	4.59192209615459	4.8975210302569	5.10356735036004	5.1025196865123	1.06621430983848	0.00891177657181392	0.0929120542522858
Merged-chr4-109214190-3	chr4	109213686	109214686	+	988.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4227.0	NM_001285895	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	2.83457617147986	3.20461316357447	3.2084353683556	3.03881448220545	2.944493479233	2.79753849240381	-0.731232396503301	0.312757169707884	0.707413942140844
Merged-chr11-51858391-1	chr11	51857891	51858891	+	1000.0	f0_balb.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-761.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	8.25262117443523	8.4195684898368	8.38933047708643	8.17513438371827	8.5682485051588	8.31533055007757	0.0180218029046968	0.935956092694718	0.986014061025137
Merged-chr11-116427685-3	chr11	116427161	116428161	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6433.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	4.98966102993514	4.70256937250504	5.019113069462	5.17401275703263	4.87303099007563	5.18192065980902	0.36755516449244	0.349487880974306	0.737532973195113
Merged-chr10-17775318-4	chr10	17774831	17775831	+	949.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20888.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	5.36692425040622	5.4310158439702	5.26282110649617	5.53966625076314	5.73841925345668	5.6005408733009	0.518749733281403	0.116424555740656	0.455577804265088
Merged-chr4-154915520-4	chr4	154915019	154916019	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	12558.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	3.53017818741965	3.27653839247588	3.2816856488831	4.04981549026781	3.85685803047076	3.64705831950091	1.82541295626603	0.00303478104238773	0.0424685605406993
Merged-chr7-132929939-4	chr7	132929431	132930431	+	842.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1211.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	4.66095219923891	4.90259717826961	4.80634690010036	5.0507076901562	4.78964308405709	5.05071423646663	0.371691424198652	0.347414364119774	0.735497468013591
Merged-chr7-30683625-3	chr7	30683121	30684121	+	928.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12016.0	NR_027848	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	2.57296786268055	2.62824891877516	2.60446932809176	2.60121603019753	2.54860787308164	2.79994794599581	0.260316628278299	0.732019954158173	1
Merged-chr9-118609497-4	chr9	118609014	118610014	+	911.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	2805.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.47367759107147	7.86678985640038	7.60435329997222	7.6939848294314	8.05573021837147	7.63239154468196	0.221269884107952	0.387499062609834	0.76768118438771
Merged-chr6-149192458-1	chr6	149191958	149192958	+	786.0	f1_balb.idr	Intergenic	LTRIS2|LTR|ERV1	-3746.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	2.90540082847005	2.90232755098591	3.24311568126441	3.29791495161026	2.94654975164323	3.75856014373981	1.43222445031192	0.0516956340414267	0.290131547100973
Merged-chr3-10025973-4	chr3	10025475	10026475	+	962.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13390.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	3.67488040538773	3.66204917322456	3.40490810973621	3.80657442203546	4.04097014607939	4.10842807537182	1.27842882460509	0.0238259968893255	0.181381282342477
Merged-chr10-83565623-3	chr10	83565126	83566126	+	781.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033375, intron 14 of 32)	intron (NM_001033375, intron 14 of 32)	21685.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	2.91573805743585	2.83566332792464	2.76075704595419	3.02165017857918	2.84121322728294	3.5083678780879	1.39640901721366	0.0641207928259812	0.329893212728884
Merged-chr7-89270668-4	chr7	89270164	89271164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68123.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.42315248562579	5.13718149048318	5.52098981377392	5.36040918803617	5.32343380523496	5.3522986109745	-0.0341559963502333	0.922328967478493	0.982542868764899
Merged-chr3-116482917-4	chr3	116482415	116483415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25260.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	4.02813606538887	3.93032896879876	4.2564873614402	4.01280501341994	4.24721339268445	4.05079404264954	0.128606225694626	0.795064473687564	0.950977844444051
Merged-chr7-126773496-3	chr7	126773008	126774008	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	ORR1A4|LTR|ERVL-MaLR	-3467.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	6.65993598907507	6.47434043999357	6.62452506054461	4.28674974345264	3.86423005961654	4.44364585950568	-6.32974006833358	1.79442648477712e-22	1.93909920708227e-19
Merged-chr5-77265256-4	chr5	77264759	77265759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011263)	promoter-TSS (NM_011263)	-235.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	6.32872113092033	6.07554066979738	6.56084786341957	6.34552394754148	6.20723031121705	5.99750844121085	-0.218701664117318	0.475687025950012	0.822097349314942
Merged-chr2-150926652-2	chr2	150926152	150927152	+	797.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163476)	TTS (NM_001163476)	17058.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	5.51435132435357	5.78617581836036	5.59275097725301	6.06958458220884	6.1140363486395	5.87119927517307	0.692875152210932	0.0268284099510568	0.195061889760165
Merged-chr17-67447016-3	chr17	67446543	67447543	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92552.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.86382159880541	2.90213486336586	2.93036083981595	2.88722822914493	2.73709831472114	2.88266333290167	-0.322140150947323	0.645275936039147	0.900466568600556
Merged-chr3-31394084-4	chr3	31393570	31394570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83751.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.38990858827952	6.47582105663348	6.08463657113804	6.72468381482428	6.53714398149634	6.0235761719499	0.220940469979174	0.493867211320453	0.831687976513909
Merged-chr7-102208957-2	chr7	102208457	102209457	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287166, intron 1 of 19)	B1_Mur2|SINE|Alu	910.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	5.20979692357412	5.38560285080419	5.07458000423759	5.55338159404465	5.41515448164191	5.40747032723582	0.434332953332597	0.213027726946819	0.605719657689159
Merged-chr11-107102988-4	chr11	107102404	107103404	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 2 of 27)	intron (NM_001359590, intron 2 of 27)	29018.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	3.88212645737546	3.7416651167579	3.68976302595689	3.71765172561337	3.65692231764849	3.86184947649867	-0.118141946551724	0.825115898721558	0.958708755759778
Merged-chr15-78321050-4	chr15	78320545	78321545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4755.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.63561613294898	3.51560667721972	4.19884524466503	3.96475197169658	3.59333928725692	3.71415520766275	-0.142535220496158	0.812779912436357	0.955776522477769
Merged-chr6-124272503-2	chr6	124272003	124273003	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32148.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	5.04456415333556	5.1635716763592	5.72733590130853	4.98237324297195	5.00237416057719	5.49629647093637	-0.328072222694033	0.435009377082895	0.798753078814766
Merged-chr13-69809849-4	chr13	69809349	69810349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138596)	promoter-TSS (NM_138596)	-33.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	5.27197136663938	5.13508748747933	5.41556297139263	5.20978678405684	5.24865381506764	5.26855603320199	-0.0581058702216269	0.868250156911567	0.969642939011354
Merged-chr7-110313580-4	chr7	110313073	110314073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 37 of 40)	intron (NM_177324, intron 37 of 40)	91870.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	6.05534812872061	5.74966446774446	5.97605610711103	5.56796864505442	5.80342276872983	6.12174331930436	-0.158080868527675	0.633691512164759	0.896060120341977
Merged-chr1-92648950-4	chr1	92648448	92649448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153114)	promoter-TSS (NM_153114)	-107.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.14827437658489	3.96604447482747	3.99554250810807	3.86368502671265	3.98264324681356	3.86272525997994	-0.397372123175066	0.428577073646877	0.795408033039652
Merged-chr7-114143607-2	chr7	114143107	114144107	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25826.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.43518939012213	3.18640038024927	3.13293603159147	2.72516150831032	2.58612241941377	2.76505724943145	-3.34013102480357	0.000119059040232116	0.00328906527876291
Merged-chr10-79925476-4	chr10	79924984	79925984	+	989.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1559.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	3.76695190943136	3.64936679852392	3.71760737386223	3.57742967066455	3.7525611407885	3.88606347888213	0.0970334275874902	0.857829755419047	0.966785186918462
Merged-chr6-97439602-2	chr6	97439102	97440102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	19684.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.60561041431469	7.57745578341444	7.66836172268514	7.62117900416092	7.8106964219996	7.70716773968112	0.148472310152216	0.499434084275117	0.834486707618126
Merged-chr7-135658382-4	chr7	135657812	135658812	+	897.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-5998.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	3.53673035186721	3.34489215205215	3.46768224277673	3.30618216094577	3.71332917245476	3.42699733513313	0.186964460824212	0.759033418907064	0.940311236380535
Merged-chr19-53119457-4	chr19	53118958	53119958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20985.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	3.34431726960585	3.39646277198023	3.43966467206655	3.36258698493065	3.32212991473129	3.71279072978162	0.286778665818706	0.634652291426588	0.896354115104213
Merged-chr11-80178510-3	chr11	80178038	80179038	+	831.023804	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172133, exon 11 of 11)	3' UTR (NM_172133, exon 11 of 11)	-5334.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.61952788206794	6.30758520687954	6.65392595516453	6.29920646310441	6.71276535972528	6.47621792486932	-0.0261102465476869	0.928646409255598	0.983838264232875
Merged-chr11-83534393-2	chr11	83533893	83534893	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-3875.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	7.22417157198135	7.0047113802736	6.49335450082653	6.96558021892715	7.45090530398246	7.09663393159185	0.362133569418328	0.240977915797091	0.638007204328764
Merged-chr2-155383346-3	chr2	155382858	155383858	+	938.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	1502.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	4.49482614543986	4.34934221741348	4.28933183730197	4.80925824222156	4.69664458677179	4.58119473978569	0.785548570075589	0.0667650598953884	0.337726063978843
Merged-chr10-108190414-3	chr10	108190018	108191018	+	751.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	28118.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	5.45422948203148	5.19622471802026	5.32407074381738	5.43187749091283	5.5739048650811	5.53617186285722	0.363695704423062	0.281904769867318	0.679908771156903
Merged-chr14-55695863-2	chr14	55695363	55696363	+	576.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-14046.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	3.78716290013579	3.92580053660931	4.18773735563695	4.08586836821626	3.95685900387014	4.33783651692838	0.464694492147046	0.366774204576715	0.751896619413869
Merged-chr11-72866689-4	chr11	72866181	72867181	+	656.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045536, exon 24 of 55)	exon (NM_001045536, exon 24 of 55)	70455.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	3.59484024541528	3.94647557483556	3.64890910025848	3.88290228133338	3.48610665620222	3.66582314997132	-0.192798358894118	0.738215594754126	0.933990122267208
Merged-chr17-13898037-4	chr17	13897550	13898550	+	960.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 31 of 33)	intron (NR_151731, intron 31 of 33)	-50323.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	3.75364376979247	3.57247658815401	3.44751867820213	3.50306998003371	3.44848682999136	3.34258702674598	-0.607271048965352	0.302992804267368	0.69972220909689
Merged-chr16-32673074-4	chr16	32672545	32673545	+	851.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-109.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	5.44965975373103	5.38878392749965	5.16073281879039	6.11483797533288	6.00497008937753	5.75973789146349	1.14761889538097	0.000575495829045349	0.0117367296429425
Merged-chr14-102983991-2	chr14	102983491	102984491	+	846.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1354.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	3.70962017104882	3.25926760534022	3.7234261121747	3.30661403573989	3.39669646328506	3.43023278859775	-0.737877823603465	0.234342328203938	0.630452522567377
Merged-chr7-83879169-1	chr7	83878669	83879669	+	925.0	f1_c57bl6.idr	Intergenic	Intergenic	5172.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.95393813345636	5.96175534995804	5.96407936564379	6.54576619959882	6.66530154772972	6.51697176972783	1.0341789745209	0.000152939017033468	0.00404248720753521
Merged-chr19-5409546-2	chr19	5409046	5410046	+	685.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	L1M4|LINE|L1	2731.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	7.26332383602152	7.09740930166051	7.25262616325767	7.50836347525368	7.66727392619754	7.38870475597385	0.488911313120774	0.0386180083750951	0.243595642650835
Merged-chr7-105739226-4	chr7	105738711	105739711	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1826.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	4.42217155090077	4.33501094425294	4.61469336804595	4.56844180489462	4.30146554828123	4.43701965899362	-0.0453005151968757	0.918628766810118	0.981830247255695
Merged-chr6-97482080-4	chr6	97481568	97482568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MIRb|SINE|MIR	5752.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.51095747088746	7.29622705078309	7.19501633614172	7.64903753422849	7.5663112967046	7.21499823368976	0.222798364855192	0.381622114037214	0.763233731504131
Merged-chr9-96477329-2	chr9	96476829	96477829	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311135, intron 1 of 2)	intron (NM_001311135, intron 1 of 2)	1346.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.05155036774573	2.90425722016054	2.90718065156931	3.21616745462181	2.81998824315163	3.53583324962699	1.12948443630346	0.125701204912349	0.474303730198928
Merged-chr15-25321392-2	chr15	25320892	25321892	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92372.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.07775499969084	6.19887350972409	5.71115942510839	6.09383337280963	6.24586441905514	6.07908582852555	0.205059227901575	0.508476242431922	0.839818423824339
Merged-chr9-95574106-4	chr9	95573584	95574584	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14267.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.66657188786895	7.31667719768417	7.58914642632973	7.66940283412847	7.81784928013582	7.47668086996846	0.200463426619857	0.414193752113718	0.785670763823423
Merged-chr2-69206228-4	chr2	69205730	69206730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305800)	promoter-TSS (NM_001305800)	-17.0	NM_001199123	66442.0	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	5.48868480413123	5.97490220345519	5.30547919517943	5.13509683555368	5.53452236789004	4.87545913304333	-0.775972553552786	0.0661519044467647	0.335693582070281
Merged-chr3-98005525-4	chr3	98005041	98006041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7997.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.4607178022322	4.30057874895694	4.06152074000533	4.05378621779374	4.25655505919393	4.0811176196852	-0.41859591680128	0.389328626625658	0.769015431167891
Merged-chr18-4254895-3	chr18	4254374	4255374	+	783.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89042.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.24333481935226	3.02222165924671	3.15071664805063	3.0560263296584	3.18039172832394	3.16454642303199	-0.0260127966770601	0.967995068513149	0.992641710345346
Merged-chr17-56476531-4	chr17	56476028	56477028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011218)	promoter-TSS (NM_011218)	-48.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	3.44599965340293	3.24305351746179	3.48605952288601	3.69933759930091	3.45391751568774	3.61044639129221	0.726908826888292	0.217884267051891	0.611911505766631
Merged-chr19-38043558-3	chr19	38043055	38044055	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	22.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.99831873902201	6.32895645158991	6.33976322641159	5.989827926248	6.31794024973093	6.47058464808856	0.0708961063423871	0.818243676904561	0.956886944398959
Merged-chr13-34647837-3	chr13	34647349	34648349	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	4832.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	3.33275323457736	3.2174391155348	3.43190184397542	3.06775623110888	2.89943434363903	3.3441999999573	-0.934024970973513	0.165690862804571	0.540863657924297
Merged-chr10-61679085-2	chr10	61678585	61679585	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126477, intron 1 of 1)	MT2A|LTR|ERVL	-1200.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	3.11451069664486	3.03322011912305	3.12774430849888	3.06512591064989	2.99512566060136	2.89684169332122	-0.460152416223537	0.491568730503143	0.830577684235539
Merged-chr1-154256982-4	chr1	154256474	154257474	+	832.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040629)	promoter-TSS (NR_040629)	-68.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	3.09002848754847	2.95420557969722	2.9577108706887	2.62307126783695	2.86583373215833	2.91016901429179	-0.975098583503757	0.184926348678918	0.568974693864642
Merged-chr6-83121539-4	chr6	83121008	83122008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016757)	promoter-TSS (NM_016757)	-47.0	NM_001083922	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	5.86383287713022	5.72002249727812	6.09415625985407	5.99728127115915	5.8998330801138	5.85980969253167	0.0547426306711142	0.859051337859495	0.967147585114099
Merged-chr3-103124287-2	chr3	103123787	103124787	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3269.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	3.17365493201688	3.08818891035842	3.10358785192825	2.81336387641609	2.87002782474783	2.9995659714378	-1.09614833651731	0.110052306421142	0.443363350300229
Merged-chr5-3343120-5	chr5	3342633	3343633	+	931.657166	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	-760.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.74356903044537	7.92409943837646	7.39998680082139	7.56479363099838	7.82215527155347	7.12004237744625	-0.243319153079924	0.401059015517537	0.777158973264623
Merged-chr13-113490165-2	chr13	113489665	113490665	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12679.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.80442274158914	5.16734711764509	5.85314264875825	5.82809524158542	5.61182866232125	5.46177214744565	0.0125507026863965	0.973488136375607	0.994039095662068
Merged-chr16-4594556-6	chr16	4594092	4595092	+	815.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031184)	promoter-TSS (NM_031184)	-121.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	3.18368305980689	2.93954497193522	2.87810898016244	2.95461126451592	2.68122097415223	3.07287699974526	-0.481038950317781	0.512986118125943	0.842253180153978
Merged-chr7-100818726-3	chr7	100818230	100819230	+	898.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	44683.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	4.83141130433341	4.63072581278646	4.84363701146586	4.70359588226328	4.96390884678106	4.9086557847027	0.22275005530268	0.576124617011094	0.871527588579722
Merged-chr11-118469999-4	chr11	118469496	118470496	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57-int|LTR|ERV1	-6836.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	7.00196651805401	6.76165899204186	7.06363796727326	6.19700155721086	6.09446475971311	6.55366659144968	-1.05663434914116	0.000217956562171841	0.00537036707882573
Merged-chr10-59881007-2	chr10	59880507	59881507	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	1416.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	5.00172603006228	4.50398946703414	5.18949531357137	4.88484242506274	5.03564060798365	5.09553516060896	0.18659279635113	0.66049407322665	0.905981809862142
Merged-chr11-97777299-2	chr11	97776799	97777799	+	748.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022891)	TTS (NM_022891)	-1381.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	2.61337343788046	2.66244618475509	2.73279863789604	2.56026750272562	2.60814369176141	2.62058469158525	-0.405080268561538	0.590312315662421	1
Merged-chr6-72517698-4	chr6	72517190	72518190	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26701.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	2.63087287580795	2.49452704811717	2.52863513373479	2.68105318660125	2.61827630666579	2.72958170841016	0.685450145823312	0.3691005481271	1
Merged-chr6-127582927-3	chr6	127582427	127583427	+	821.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4952.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.06724020564468	3.07642978810203	3.0894400624306	3.17972636466161	3.11173100234336	3.27574315701987	0.475200027760728	0.457503979235545	0.812307535537887
Merged-chr4-43044885-4	chr4	43044394	43045394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1326.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	6.9567124096418	6.94520502303736	7.06505818137999	7.13513511880749	7.39571444633849	7.1731019223817	0.392194284934596	0.106670508976791	0.435916169724877
Merged-chr14-74944845-3	chr14	74944345	74945345	+	923.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	3032.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.90940413673572	4.84525292446194	4.88007917160607	5.29266141307655	5.31264247059624	5.5974426363486	1.08132507311525	0.00317406837417581	0.0439666857463661
Merged-chr12-100080352-2	chr12	100079852	100080852	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31979.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	2.99829396242988	2.89113613247847	2.9198964642328	2.99363857484772	3.03606431191143	3.16720453890028	0.589685449285027	0.380386292357749	0.762534569734688
Merged-chr2-153410360-1	chr2	153409860	153410860	+	802.666687	f0_balb.idr	3' UTR (NM_001134300, exon 11 of 11)	3' UTR (NM_001134300, exon 11 of 11)	34119.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.0755021885729	3.44911703715726	3.64270731385065	3.17115849618645	2.91257585894556	3.51689384646781	-0.726697947401774	0.310330914172651	0.705829393476587
Merged-chr18-55408930-1	chr18	55408430	55409430	+	870.3333130000001	f0_balb.idr	Intergenic	Intergenic	-416339.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.99010482518349	5.03031388733974	5.07901695679206	4.4227975043888	4.56438384470615	4.79537038699278	-1.0006492276604	0.0129839768149899	0.120833323210119
Merged-chr4-45966171-4	chr4	45965658	45966658	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	823.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	2.69253864587212	2.4930056692367	2.74141046195062	2.6909044675485	2.38941526760941	2.4299459862628	-0.775159015383148	0.344286433000981	1
Merged-chr9-95554676-2	chr9	95554176	95555176	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5141.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	2.87904360811849	3.23081076556752	3.20221191364335	3.13403336919434	2.82917651333794	3.48364015399306	0.253990096781352	0.728916526736294	0.930478966998914
Merged-chr14-31436733-2	chr14	31436233	31437233	+	910.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-633.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.48574020812098	5.42771712359433	5.31812529385111	5.55162162348708	5.37858326226794	5.28431012239607	-0.00851211225893685	0.979967074934188	0.995416130723271
Merged-chr16-31867014-3	chr16	31866531	31867531	+	970.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 21 of 22)	L1M4c|LINE|L1	-11779.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	3.58476513667401	3.41593496306076	3.78763670790024	3.2305834141485	3.39006664794391	3.56197201354782	-0.742446974808871	0.221787707211014	0.616630297434312
Merged-chr5-72275422-2	chr5	72274922	72275922	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	72079.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	2.45090635386115	2.47716642257785	2.65761519542106	2.32559538600216	2.45565255506341	2.48458405006991	-0.636974858857264	0.432324635123333	1
Merged-chr14-54398909-6	chr14	54398415	54399415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	10557.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	7.90101133535577	8.02993063506968	7.71725860168245	7.96871121838038	8.01528647907835	7.59186057975395	-0.0200178504558754	0.934404659033026	0.985707838096286
Merged-chr6-39242880-2	chr6	39242380	39243380	+	967.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-36107.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.75565416325451	4.93256830659469	4.60555406377153	4.3442606443527	4.59647148807373	4.45609562900907	-0.725594775376222	0.0915697615020838	0.402843395184502
Merged-chr1-86202830-4	chr1	86202328	86203328	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027456, intron 17 of 20)	intron (NM_027456, intron 17 of 20)	48048.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	3.07264320384241	2.98990326930108	3.05313299855003	2.76478364784252	2.85037608707999	2.94877097255098	-0.896384700921144	0.196710032530892	0.584670419247381
Merged-chr2-161110134-2	chr2	161109634	161110634	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1048.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	2.61349358042582	2.78226462615039	2.77274804257894	2.49186182635993	2.55970338128124	2.84509614454455	-0.48360492914461	0.533838752376033	0.852715482371668
Merged-chr2-118659138-2	chr2	118658638	118659638	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4439.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	2.12281780413736	2.08769807551028	2.37541285273097	1.98604888311126	1.91947909562475	1.99489026964002	-1.89913419807069	0.0540097672284588	1
Merged-chr18-75368571-2	chr18	75368071	75369071	+	990.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042660, exon 1 of 4)	5' UTR (NM_001042660, exon 1 of 4)	1206.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	5.71941106672503	5.68098721320443	5.7486019597157	6.34359056963154	6.09285172167396	6.24402667856583	0.893247424599083	0.00257586686295257	0.0375298073774396
Merged-chr15-98513848-4	chr15	98513353	98514353	+	777.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	5981.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	7.3000287675114	7.34742533377679	7.15142356381327	7.14992907043914	7.4726249967016	6.64840266117141	-0.182258537260155	0.53998597064756	0.856245552500013
Merged-chr11-69425219-2	chr11	69424719	69425719	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-11544.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.12886102204709	4.27123366955965	4.34111952372522	4.31272516541995	4.07692328125844	4.13742108097011	-0.187676233645811	0.68950641158464	0.917397716197234
Merged-chr1-36274465-2	chr1	36273965	36274965	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	5.42255559485574	4.60137162493559	4.58943119086116	5.04659187178549	4.79763616493836	4.74620514981924	-0.161594349207871	0.734776250133493	0.932617455907478
Merged-chr4-132809259-2	chr4	132808759	132809759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-12895.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.51260582291861	6.16842452670203	6.65230697012853	6.62049808229858	7.07026964122209	6.72703366045911	0.595664258898446	0.045500826402146	0.26930436162134
Merged-chr12-84189791-2	chr12	84189291	84190291	+	603.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4224.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	3.5666583627862	3.50625610110895	3.65160254567504	4.21695154361939	3.64283458237624	3.66878400309781	0.987475151633412	0.0896191251123555	0.397786003889854
Merged-chr6-125166599-4	chr6	125166092	125167092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	-125.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	7.32162364344195	7.13511990800492	7.54184792665415	7.54426807933372	7.74553187418614	7.56048392638482	0.422272188463219	0.0835105391068064	0.382519080921008
Merged-chr13-33934831-3	chr13	33934334	33935334	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1198.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	6.40174208305035	6.74417805727253	6.59090358947203	6.98484789786028	7.2007130568034	6.66754703673146	0.610975715051117	0.0323795867621313	0.218723872000602
Merged-chr3-108296581-2	chr3	108296074	108297074	+	797.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	12510.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	4.15274034924881	4.29793565689005	3.85339099710603	3.61935757766327	3.61607294358361	3.92422778544455	-1.26552580223675	0.0202669847252153	0.162911510558056
Merged-chr17-49384455-3	chr17	49383966	49384966	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43898.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	2.31208744949092	2.38109579840302	2.53132456801377	2.36052441399715	2.30662386774746	2.48076755725971	-0.169231700738154	0.836691500222281	1
Merged-chr12-33314211-5	chr12	33313649	33314649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	11634.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.9583533952186	5.61307170578996	6.18513272983907	6.07760348449645	6.23245452193115	6.30293619477769	0.476733826757565	0.134584268611722	0.490430403023745
Merged-chr17-87971476-2	chr17	87970976	87971976	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3574.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	4.93834751787596	5.14239325614454	5.17753632906256	4.82580900612571	4.81717050431571	5.01099379895775	-0.447598820281753	0.237997470926256	0.634577778375799
Merged-chr7-99537128-3	chr7	99536583	99537583	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	MIR|SINE|MIR	1597.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	5.2209560552805	5.25736427350133	4.88454548448767	4.66117139067734	4.88908433621174	4.75129979129274	-0.793011402496428	0.0452709193622631	0.268527420751011
Merged-chr5-53996030-2	chr5	53995530	53996530	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2493.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.69341391986136	4.5637591627813	4.59225505624154	4.46085383001953	4.48184970309687	4.77243953862077	-0.120429803947276	0.775948745557168	0.944804182096302
Merged-chr1-132342934-2	chr1	132342434	132343434	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25014.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	6.54653887472933	6.67770752098468	6.42950038325272	6.44170806722217	6.60151330191048	6.29063681493008	-0.160973072244112	0.559077713270671	0.864901733108576
Merged-chr6-135008414-4	chr6	135007926	135008926	+	946.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3186.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	6.04961336146993	6.33993002326793	5.67011916111125	5.79754403596454	5.84526659149262	5.48806081726777	-0.583943518300822	0.0942326673956141	0.408956234963576
Merged-chr16-94725034-4	chr16	94724536	94725536	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	113617.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.11530765931848	5.02742724098909	4.78394772217711	4.67353901777622	4.16883833561572	4.51741856555967	-1.2399503996081	0.00497750074412394	0.0610326970110618
Merged-chr15-82807586-4	chr15	82807081	82808081	+	862.895874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13336.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	4.39693142595089	4.14750606046738	4.20144466504858	4.64630751197297	4.30424894554385	4.31810172320846	0.464380392098352	0.319034909834346	0.71299998254265
Merged-chr17-43040736-4	chr17	43040242	43041242	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	RSINE1|SINE|B4	24187.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.44423577726112	6.32917305627324	6.36870894325969	5.91808753473467	6.08909000492812	6.19310174401937	-0.526871188479324	0.0618821980909017	0.322948691592307
Merged-chr15-38663216-2	chr15	38662716	38663716	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	B1_Mur2|SINE|Alu	1312.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.65155126429549	4.70829825521199	4.27650725143105	4.63827193006291	4.77081557923489	4.07937851387119	-0.0615348458787728	0.90316012919308	0.977756599430303
Merged-chr15-62011928-4	chr15	62011434	62012434	+	877.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-26052.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	2.90968891412194	2.92024886651075	3.03586754275481	2.69839412602523	3.12442086606137	2.8686221635287	-0.177905974475171	0.808803769253825	0.954721853010197
Merged-chr2-150841334-4	chr2	150840828	150841828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 6 of 12)	B2_Mm2|SINE|B2	1242.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	8.50082185660957	8.69116045492066	8.26143856687297	8.50702194918638	8.85809447896204	8.22340650524829	0.087144481054219	0.737029728710047	0.933485915273672
Merged-chr1-131293773-2	chr1	131293274	131294274	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14211.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	2.91423229867164	2.86790609347257	2.98413714950935	2.93907724058587	2.89019426218107	2.99741325906876	0.096024373357735	0.887645221355823	0.973836995667151
Merged-chr9-121309416-4	chr9	121308924	121309924	+	736.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	11922.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.99497271893555	3.76868117989523	3.86281979251709	4.48606124083099	4.06566684024268	4.27474839256804	1.1662738540453	0.021985374434583	0.171916082694557
Merged-chr14-55681965-4	chr14	55681452	55682452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-135.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	7.88592124088998	8.05086171616488	7.51095501530396	7.70004744987184	7.96694539191329	7.86273699707162	0.00803466158928091	0.974456975530633	0.994276686350905
Merged-chr5-43855020-4	chr5	43854523	43855523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13786.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.36926816888118	7.35465298577779	7.46555618363572	7.07888312473573	7.15456025827348	7.06562152269611	-0.434539907916715	0.059458925493414	0.315687740713118
Merged-chr1-88223753-2	chr1	88223253	88224253	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-3267.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	5.74836327424367	5.98310507103994	6.02811273095001	6.1992492120149	5.98998950038213	6.29314006192108	0.409566431323543	0.176645242048114	0.557127430636861
Merged-chr4-136207545-2	chr4	136207045	136208045	+	770.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	1180.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	2.14042509127872	2.18399648862249	2.26638580169696	2.273824551863	2.14581080820963	2.40483818363359	0.545940735490636	0.528644741784633	1
Merged-chr17-34029080-3	chr17	34028500	34029500	+	683.233337	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-945.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	3.09428401120356	3.0394801628618	3.48019168616378	2.86532615744106	2.79906521409737	3.24417404542388	-1.04730848859042	0.150758159172782	0.517759819566156
Merged-chr4-145196761-4	chr4	145196258	145197258	+	830.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1753.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	2.81859237920038	2.7433930571019	3.16404824790274	2.99184418066424	2.81630869965818	3.12594307457752	0.304525769064395	0.674319892228399	0.911841916826811
Merged-chr9-37093167-3	chr9	37092665	37093665	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	54157.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	4.74912949103298	5.25900822476863	5.1735188683883	3.80271622506679	3.69864539372679	4.07255972002821	-3.47121450967672	1.34165258476467e-10	1.74978414221157e-08
Merged-chr19-7580831-1	chr19	7580331	7581331	+	580.5	f0_balb.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23346.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	5.20683384668242	5.15853553035465	5.8131745374239	5.34537827807119	5.19207158964701	5.71330203130065	0.0188978165130288	0.962492802581755	0.990858153530085
Merged-chr2-142900591-4	chr2	142900096	142901096	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	868.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.34739368457161	5.09385966026862	4.9813206468667	5.43200975142351	5.24861797305516	4.93125910060809	0.146220617655385	0.705747159880427	0.922834459892351
Merged-chr13-93013174-4	chr13	93012676	93013676	+	835.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60128.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	2.81059318973627	2.80626087412938	2.69171377565754	3.13490591955825	3.25824471016484	3.14821111863659	2.00420244714446	0.00620670394278091	0.0714806119959742
Merged-chr5-64806305-4	chr5	64805794	64806794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	2771.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.17942029220398	7.41117330596575	7.2985719257278	7.02688480854013	7.39186579819355	7.29974203784736	-0.072934085144989	0.77007285597473	0.943310056383255
Merged-chr13-89339995-4	chr13	89339490	89340490	+	942.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200646.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.99767737367337	3.97764440233533	4.03856680435171	4.52290482288569	4.55820083411733	4.39176454843324	1.35702520059741	0.0031923457001875	0.0441830840021958
Merged-chr7-19820152-2	chr7	19819652	19820652	+	793.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033601, exon 2 of 9)	exon (NM_033601, exon 2 of 9)	2603.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	2.38277709861769	2.43679763174084	2.54826691017879	2.75031905330796	2.74040290908138	2.98584189420594	2.23661206678601	0.00666464269126387	0.0753876548470207
Merged-chr17-43571964-2	chr17	43571464	43572464	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	3513.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	5.01494699439753	5.10753746292724	5.17793738116161	4.95744725859529	4.80155609030084	5.17820957854778	-0.263022818312593	0.487917491601941	0.82874660409109
Merged-chr17-71162486-2	chr17	71161986	71162986	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTATA)n|Simple_repeat|Simple_repeat	-21046.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.2904682818153	3.36150365964725	3.23341235689656	3.31598345258715	3.30811634096013	3.36259473128627	0.111543092012896	0.853659287269625	0.965752330271851
Merged-chr6-121337208-2	chr6	121336708	121337708	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144512, intron 14 of 14)	intron (NM_144512, intron 14 of 14)	-5868.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	2.39246541184194	2.28849092623602	2.37671584817958	2.38084860155871	2.21895488646531	2.5143662938583	0.123891134468417	0.882474300380963	1
Merged-chr2-124668568-7	chr2	124668080	124669080	+	832.115662	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172537)	TTS (NM_172537)	14999.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.99037565037506	4.19975581677777	4.68933609677683	4.20617317745955	4.20739370196757	4.41758707472494	-0.104635039445215	0.836456470121369	0.962001762335242
Merged-chr13-108316864-3	chr13	108316381	108317381	+	704.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178683, intron 1 of 10)	intron (NM_178683, intron 1 of 10)	544.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	4.02449087788469	3.98692382582178	3.87454469570845	3.98065896645567	3.7727966724649	3.99403669953343	-0.167650417675909	0.741065651785602	0.934742147011145
Merged-chr8-86888083-4	chr8	86887574	86888574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2816.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.7829617063319	6.82754659797253	7.02962171736384	6.14133474888463	6.16167077235383	6.56029048220139	-0.9441922006249	0.000833293571131511	0.0156234095238195
Merged-chr6-124812932-2	chr6	124812432	124813432	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	1364.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	3.99203039915019	4.09902055997146	4.65550391881916	4.33356417486573	4.36749455624404	4.5734799465104	0.404341832909905	0.419825081312479	0.789317065455154
Merged-chr8-94178381-2	chr8	94177881	94178881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-708.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	6.68791340700322	6.33049817953342	6.40021447209008	6.34790926042274	6.62583369741319	6.44113940354024	-0.00538039834613191	0.984942860725055	0.996839087212922
Merged-chr15-25267169-4	chr15	25266658	25267658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146606.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.22124530959145	6.32034286381371	5.90339434278362	5.70065631939247	5.85967019108322	5.51553184268597	-0.800629379538675	0.0131745524366208	0.12188208919461
Merged-chr3-96221526-4	chr3	96221032	96222032	+	993.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	460.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	7.46124850705585	7.42337587977221	7.09446564696255	7.41316698794966	8.07908553502827	7.70755453583842	0.620089612820755	0.0265532137335396	0.193691576079632
Merged-chr9-56937398-4	chr9	56936884	56937884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133976)	promoter-TSS (NM_133976)	-116.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	6.95948015595317	7.36084366718222	7.01121547245408	6.82526158732628	6.95484529296719	6.88673644258838	-0.361541217550032	0.166076689301087	0.541194161193161
Merged-chr4-53440869-3	chr4	53440374	53441374	+	981.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133891, intron 1 of 15)	CpG	461.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.89239057902928	5.02426195709092	5.27668728076281	5.49522876684152	4.651746773981	4.94880876111755	-0.736819981171893	0.120310136039481	0.463771641846234
Merged-chr16-5444940-4	chr16	5444451	5445451	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188995.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	3.8680073315776	3.49333367532836	3.62166452386587	3.1060624852921	3.32045596069719	3.36320513244805	-1.54290827977903	0.0150027796927124	0.132758785005535
Merged-chr18-53745144-4	chr18	53744648	53745648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-601.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	7.61634207919891	7.96053015980993	7.49484721171457	7.65085790734803	7.88609788279433	7.52053166852045	-0.01654835446095	0.948474999607314	0.988140911675735
Merged-chr16-90712502-4	chr16	90711968	90712968	+	921.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14903.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	3.80298444164774	3.57135691476528	3.60499334737532	3.65953757604798	3.24332526440735	3.56778656612283	-0.598885861093949	0.317781787270175	0.711552082968077
Merged-chr4-41761026-2	chr4	41760526	41761526	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163401, intron 1 of 12)	intron (NM_001163401, intron 1 of 12)	583.0	NM_001172054	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	4.95360611896681	4.88469273466042	5.08644520742419	5.38819858796339	5.00241070208326	4.97411768091801	0.352367577601496	0.360208221528094	0.746468561887568
Merged-chr3-96171618-2	chr3	96171118	96172118	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-888.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	6.8022626655001	7.21948303372245	7.114396710199	6.97801900695815	7.31930254443931	7.01616085271038	0.0968196103213105	0.719890432456457	0.927960661644538
Merged-chr19-21777274-4	chr19	21776791	21777791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1049.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.69301347047936	5.64930525323689	5.49797497245997	5.39585074993584	5.20988753470827	5.34835447531326	-0.592031559098549	0.0752706596238616	0.361275291152819
Merged-chr12-102750133-2	chr12	102749633	102750633	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	6373.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	3.17881990625683	3.24114348683472	3.37945924791047	3.2543582911169	3.30945673396642	3.34088304699089	0.15110788944089	0.80493691991918	0.953697404102693
Merged-chr16-91379208-4	chr16	91378767	91379767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	6484.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.77168822938104	6.63223150841761	6.71118404311939	6.53591610388619	6.71360471293528	6.57197370247792	-0.14409352124258	0.576331173463751	0.871585692229598
Merged-chr17-67318105-3	chr17	67317644	67318644	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	36315.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.52395283080397	4.53405399988719	4.23352926295642	4.54646135455892	4.49288804950739	4.39786673644415	0.0892645204852683	0.839886940685756	0.962784121274377
Merged-chr6-5104440-3	chr6	5103961	5104961	+	926.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89485.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	5.82968698042446	5.92406852569417	5.70268287943885	5.68746343611303	5.38413727010253	5.41584217211057	-0.600490586530585	0.0659080332750412	0.335069080023806
Merged-chr17-29431062-2	chr17	29430562	29431562	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-59983.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.82030629100094	3.53113478034501	3.54173163299321	4.26277858052435	3.99690401088913	4.13963097404158	1.54012046347527	0.00507769393847534	0.0617968052117386
Merged-chr16-33381340-3	chr16	33380843	33381843	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358570)	promoter-TSS (NM_001358570)	41.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	6.89583527917274	7.10334464064159	7.22493785357569	7.34733822883608	6.95930933924481	7.00766439634698	0.0608107669160662	0.818020558772677	0.956841186661563
Merged-chr9-66974974-4	chr9	66974485	66975485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030717, intron 1 of 5)	CpG	499.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	7.74579758958764	7.75729508263777	7.29019272381173	7.43173406733553	7.3089099096813	7.50090789643307	-0.310533007477635	0.216780329113188	0.61037688227024
Merged-chr5-125332203-2	chr5	125331751	125332751	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	8843.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.08251619065984	3.75873006498231	4.24368838141211	3.65099333716148	3.82349617127932	3.80608223330121	-0.846901606096029	0.119312039173452	0.461764165320091
Merged-chr15-101145636-4	chr15	101145098	101146098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001277259)	TTS (NM_001277259)	17076.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	6.88470108463279	6.39354521959719	6.71281206289371	6.99528383168486	7.1692470294872	7.01852890250226	0.598302319860907	0.0286169696988212	0.202738255827971
Merged-chr2-101779227-4	chr2	101778727	101779727	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	18480.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.97876299842814	4.9896461724538	4.97655741828536	5.26785048754815	5.23757420099296	5.56251159356297	0.765349859222814	0.0352952100912787	0.230648224399208
Merged-chr14-121995960-2	chr14	121995489	121996489	+	650.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	MLT1B|LTR|ERVL-MaLR	-30796.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	5.36329143087751	5.54796183858161	5.21048022351121	5.21075007432367	5.42005351477001	5.60346458493852	0.0485559656339721	0.891443876074718	0.97481556123419
Merged-chr10-88441414-4	chr10	88440910	88441910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 19 of 20)	L1MB5|LINE|L1	-18177.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	6.73467379729331	6.8764723238134	6.45771668058935	6.75414468803932	7.04923933505782	6.92728858904061	0.32124747038728	0.238507444174137	0.635267379893833
Merged-chr5-113636494-4	chr5	113635998	113636998	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7105.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	6.90449742667136	7.29129347159635	7.05422156827598	7.39893717056539	7.35255941649259	7.13823442144388	0.313402508464874	0.219664968245891	0.613969858172794
Merged-chr5-103388041-2	chr5	103387541	103388541	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	-37151.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	2.86259286919035	2.81825798406167	2.77622514786029	2.87531765567333	2.96572063285355	3.14595322914049	0.848086648538376	0.22762216116231	0.622808210644087
Merged-chr10-82048176-4	chr10	82047695	82048695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001319203)	promoter-TSS (NM_001319203)	68.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	4.85397619077892	4.89153705900414	5.06093965069204	5.44634608732523	5.30199847318685	4.82175084979683	0.618628969980925	0.119337735620958	0.461810729492545
Merged-chr2-118746254-5	chr2	118745794	118746794	+	748.659973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301269, exon 1 of 1)	exon (NM_001301269, exon 1 of 1)	536.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	4.45840581598842	4.3305704917343	4.56802413800422	4.35617111709575	4.05114237341266	4.47516879536652	-0.408481375632707	0.380123972112826	0.762308048682461
Merged-chr1-64246742-3	chr1	64246244	64247244	+	637.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125355.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	2.71454861337813	2.80229631602719	3.30511286690799	2.64685428124692	2.62519232043545	2.76976507297387	-1.42998422963112	0.0691632586643906	0.344038279792654
Merged-chr15-31467027-4	chr15	31466536	31467536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-13347.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	5.67476249988199	6.08272336618359	5.88407006536439	6.00173683315595	6.16506173645831	6.08427900517047	0.335619997292517	0.277540118196832	0.674707488501667
Merged-chr10-81542618-2	chr10	81542118	81543118	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	2428.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	4.23332948876269	4.60625639559358	5.05342203838936	4.31666811146343	4.3036676881921	4.61365815024093	-0.616688750168425	0.211485981604974	0.603945120913907
Merged-chr4-6357587-4	chr4	6357074	6358074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8106.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	8.01673093193483	8.22827636211058	7.80817109012774	7.7871049994714	8.0160398299193	7.46624890888074	-0.354017639570907	0.173744720465811	0.552967131660208
Merged-chr4-43042491-2	chr4	43042001	43043001	+	847.583374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	B1_Mus1|SINE|Alu	-2200.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	4.97133167169776	4.90727290310352	5.52308137053348	5.50312236328762	5.5640191176194	5.3576024140631	0.665908960890349	0.0827222447455728	0.380473856657433
Merged-chr17-24719985-4	chr17	24719475	24720475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	-10.0	NR_027900	73474.0	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	8.64230570962378	8.84037135385941	8.3480752119645	8.26916728449647	8.62533767019973	8.1962053651891	-0.342731429736327	0.168459916495095	0.54506046592946
Merged-chr9-40325829-4	chr9	40325315	40326315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-4492.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	6.57765670064169	6.3701596078502	5.85236824861393	6.29797004975397	6.22205468402899	5.83264182046784	-0.286664672487989	0.401847146884602	0.777819330928956
Merged-chr10-96464808-4	chr10	96464263	96465263	+	715.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152238.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.07238921144033	3.99622713994233	4.03001449983598	4.36354431596823	4.08132255236773	4.41335428985983	0.708110575690995	0.141636634029417	0.502314425211819
Merged-chr7-101060708-4	chr7	101060228	101061228	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-48047.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	5.17348935530918	4.98692394838846	4.81643232160216	4.62711888190958	4.65231934518302	4.72420768389131	-0.775151977767938	0.0513378562118442	0.288860653059428
Merged-chr7-99537542-2	chr7	99537042	99538042	+	747.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	2056.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	4.4207476581622	4.32909278080656	4.34671215884463	4.06304615018035	3.96328486490036	4.19150098961217	-0.835681876356181	0.0732944265505506	0.355717421657819
Merged-chr19-4216204-4	chr19	4215694	4216694	+	849.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310038, intron 2 of 3)	intron (NM_001310038, intron 2 of 3)	1805.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	4.01549167838904	3.68667140344301	4.05261617621087	3.89249716039354	3.71979681763397	3.77995531085622	-0.396077720890194	0.458851867121394	0.813236440920954
Merged-chr6-50545683-7	chr6	50545195	50546195	+	986.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20779.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	4.81660487235174	4.93536339539564	5.0969781241611	5.4106302432403	5.78083057465484	5.09117136892	1.06834686748413	0.00656289892867222	0.0746015963339291
Merged-chr13-64250614-3	chr13	64250157	64251157	+	645.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045798, intron 1 of 2)	T-rich|Low_complexity|Low_complexity	1957.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	2.00733538701864	2.10257901362015	2.1738713520488	1.96015441892446	1.77591266099897	1.91293133490231	-1.89039173021586	0.0674368560443123	1
Merged-chr19-45559175-2	chr19	45558675	45559675	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330506, intron 3 of 9)	intron (NM_001330506, intron 3 of 9)	1389.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	2.41351720235108	2.44978891671553	2.37626281318775	2.64837777703011	2.46369112120043	2.76885772095542	1.27148266097985	0.118416549377396	1
Merged-chr8-75065989-2	chr8	75065489	75066489	+	885.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-27629.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.66240809692198	3.49519695489789	3.4026245232104	3.875753919596	3.51334995814272	3.70008985337512	0.597401741977328	0.304772058796992	0.701115228393427
Merged-chr7-19817624-4	chr7	19817136	19818136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	5119.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	6.71929469557859	6.51664072288248	6.38997905638107	6.86523222221043	6.85287289755581	6.74929253589335	0.423280682840267	0.108065027018778	0.439120709487643
Merged-chr4-119612392-2	chr4	119611892	119612892	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357177, intron 6 of 12)	intron (NM_001357177, intron 6 of 12)	-25340.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	3.24748623123535	3.35567797440613	3.42132158498925	3.29365484736675	3.20980430671424	3.49138817802601	-0.0438309945719495	0.942881900614507	0.987217876821358
Merged-chr15-6569319-4	chr15	6568799	6569799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.59553060700021	7.7991613336868	7.67234757995789	7.63637949053616	7.88112453110578	7.80668814194369	0.126296039425014	0.576532022165142	0.871585692229598
Merged-chr10-54059251-4	chr10	54058708	54059708	+	627.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	16588.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.07379287795259	2.96339202427082	3.28773633257089	3.15532329336556	2.98956673275207	3.1365258211075	-0.0698852585431557	0.9162238615345	0.981243905880233
Merged-chr17-71488548-2	chr17	71488022	71489022	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13179.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	4.0110865540847	3.84422582082	4.73467373767394	4.61621890579938	4.82169437932582	5.36576843278005	1.6297636364912	0.0592928335226944	0.315411184753358
Merged-chr15-75922781-2	chr15	75922281	75923281	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1221.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	3.90448828070131	3.62218836038818	3.91063311462975	3.69189706565541	3.47159714005546	3.73376063751338	-0.622318573625662	0.264849534796276	0.662699378806683
Merged-chr7-122404915-1	chr7	122404415	122405415	+	588.5	f0_balb.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	115790.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.82323206333138	3.98302871933651	4.12724485776739	3.89547767195872	3.94369796117768	4.01229720331835	-0.0842260875352996	0.867272569933767	0.96931826298411
Merged-chr2-144714783-4	chr2	144714269	144715269	+	937.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	RMER13B|LTR|ERVK	-108897.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	2.40101208672916	2.25973107448523	2.3935737573029	2.59781414977617	2.44222955082837	2.65926257452225	1.34752502414057	0.103466942768813	1
Merged-chr2-145866833-3	chr2	145866342	145867342	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-36399.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.07797132413171	4.1715400717856	4.58025751735474	3.79028294738347	4.1048197701245	4.29692866489383	-0.581577408795596	0.268101403062414	0.665252140405214
Merged-chr15-86190704-2	chr15	86190204	86191204	+	788.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4563.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	5.76774533661281	5.83768415094402	5.88223718624301	5.59731549864018	5.74174808221894	5.54930508715983	-0.339846772502914	0.275961675518791	0.673355880502019
Merged-chr14-17813015-2	chr14	17812515	17813515	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	L1M5|LINE|L1	152055.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.56984749093511	2.73301656343673	2.39565858360004	2.64236360098512	2.64799168654593	2.73415322161342	0.529034386111486	0.513128781270067	1
Merged-chr15-78570548-2	chr15	78570048	78571048	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009008, intron 2 of 6)	intron (NM_009008, intron 2 of 6)	2235.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	3.59575958309989	3.16265715113943	3.446978656709	3.64873815831794	3.59052203640379	3.62728998436967	0.749877578783268	0.21619682127144	0.60962730956869
Merged-chr19-55254680-4	chr19	55254173	55255173	+	855.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	1304.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	6.33265837797574	6.60750320699895	6.55050564733173	6.81678171845149	6.87168988059333	6.53897181038066	0.409520287067634	0.133986169864288	0.489407702218533
Merged-chr11-8580017-4	chr11	8579510	8580510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	84525.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.61550381114814	7.86253004540676	7.37292671390207	7.22270504415929	7.30964817500375	7.14128748519045	-0.602754379820604	0.0164067662402792	0.141424863288217
Merged-chr12-80083366-4	chr12	80082860	80083860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29653.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.81016654910149	3.73790603678657	3.88614703228123	3.78543991696534	3.54138118264948	3.75642927397662	-0.386705667499367	0.472826679223668	0.820550293768681
Merged-chr5-53385709-4	chr5	53385182	53386182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	118576.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	4.60010399342918	4.52533954299969	4.22236602004998	4.54425390087203	4.66220656777339	4.96543422515117	0.63469292144255	0.160300855486655	0.532965919658045
Merged-chr16-10784654-3	chr16	10784175	10785175	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271603, exon 2 of 2)	exon (NM_001271603, exon 2 of 2)	861.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	4.56042497443872	4.23591963821371	4.18403679483381	4.42999057854926	4.24014800926137	4.20499954820549	-0.126891410948748	0.787644541813222	0.94877064431094
Merged-chr19-18672245-1	chr19	18671745	18672745	+	1000.0	f1_c57bl6.idr	intron (NM_026120, intron 1 of 7)	intron (NM_026120, intron 1 of 7)	1465.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	3.57128255611178	3.71551805883016	3.36410565873725	3.27067013042933	3.40373869416903	3.54827457992264	-0.576693327995931	0.340039840484667	0.72967866276074
Merged-chr16-24655338-1	chr16	24654838	24655838	+	699.0	f0_balb.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-66517.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.96883286476364	4.17885351540398	4.13237523952394	3.9761408970055	3.82980286392687	4.10887897576785	-0.379546361959852	0.446141114342353	0.805662474601179
Merged-chr8-3515430-4	chr8	3514920	3515920	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	36.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	4.66027131946654	4.60461332120509	5.13315604706908	4.66818046560153	4.70948567011288	5.04128108933499	0.000270645437422077	0.999502002494954	0.999920050950963
Merged-chr11-59213504-1	chr11	59213004	59214004	+	1000.0	f1_c57bl6.idr	5' UTR (NM_001130408, exon 2 of 5)	5' UTR (NM_001130408, exon 2 of 5)	5143.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	3.13064112773894	3.15068006046031	3.44408347240327	3.54328732619357	3.29877041099694	3.61722725236443	0.964412538854186	0.125052595799706	0.473193715030777
Merged-chr11-89031365-4	chr11	89030865	89031865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29383.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	5.75156947820225	5.83219670864499	5.68762007596156	6.32812058682676	6.3866672809861	5.77924028059149	0.768623221763931	0.0184487716016874	0.153171561308442
Merged-chr2-45103166-4	chr2	45102666	45103666	+	785.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	7111.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.87813782846972	5.53209665351892	5.75801758435861	5.75535838460965	5.6488143786478	6.04764767112	0.160633322341359	0.628073576569665	0.893508518159715
Merged-chr1-136133561-2	chr1	136133061	136134061	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	2171.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	4.70866769973493	4.86132656582096	5.43560794935808	5.49798493679773	5.55992893670694	5.68028114443857	1.10947021089154	0.00523363187225425	0.0631588166535942
Merged-chr2-28641118-7	chr2	28640625	28641625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022887)	promoter-TSS (NM_022887)	-108.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	7.70563583681205	7.63715025481319	7.46971480024932	7.62284587503935	7.49283299777413	7.02340971436495	-0.287782266844053	0.275637657055393	0.673202119620203
Merged-chr7-64001289-2	chr7	64000789	64001789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-62374.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.79981825603842	4.8331325093004	4.99185428496619	5.03412614536468	4.73910126617261	4.91542893568676	0.0566574877958106	0.884780527037824	0.973538624783452
Merged-chr6-116131937-4	chr6	116131431	116132431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MIR|SINE|MIR	61443.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	6.031557709307	6.08735265376152	6.13060515870766	6.35553790592264	6.39836562160031	6.31430689742608	0.466730370247075	0.0890899200768415	0.396552411905118
Merged-chr7-80455882-6	chr7	80455404	80456404	+	796.622192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 21 of 21)	intron (NM_001042527, intron 21 of 21)	-50468.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.81112556985478	3.99334723840725	3.89383756964787	3.51859479647752	3.74174313479315	4.00920634141176	-0.436682208577828	0.426948317837545	0.793904265858508
Merged-chr8-104375435-4	chr8	104374933	104375933	+	978.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	20374.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.08916471625424	4.65147500373723	4.66960780280723	4.969363940628	4.93662443735675	4.77752305146661	0.164201926187433	0.691515001452707	0.918349474539044
Merged-chr1-106345439-4	chr1	106344925	106345925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 8 of 16)	intron (NM_133821, intron 8 of 16)	173556.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.97189573452939	4.7065643661952	4.37653488431379	4.82752748173886	4.42755439054467	4.75004773811578	-0.101423464401849	0.823969206354328	0.958461473318254
Merged-chr18-65684032-4	chr18	65683533	65684533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-14235.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.2516349498943	7.00951095858706	7.04685481909146	7.19620527669387	7.20162289313654	6.87745598573257	-0.000785371614582917	0.997536899800384	0.999506892232916
Merged-chr1-140268543-3	chr1	140268027	140269027	+	710.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22270.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	4.34202729819151	4.50232669958667	4.09200035349479	4.18325692466752	4.29801242931459	4.05957424609482	-0.379459016782352	0.431606787674585	0.796971674333736
Merged-chr5-142818928-4	chr5	142818416	142819416	+	912.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1529.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	6.15219363178751	6.26291082556086	6.71122368883329	6.67216142506532	6.97310895701997	7.15986196926285	0.885534320451351	0.00356380901081755	0.0478286161567914
Merged-chr6-72349813-4	chr6	72349330	72350330	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	2513.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	5.72712730592659	5.81976475935903	6.18380950398963	5.82584206091111	5.93888344173839	6.08190776532991	0.0631732389771497	0.842871531394701	0.963201849568639
Merged-chr17-71216266-6	chr17	71215770	71216770	+	828.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	11616.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.26222999621647	6.11468748667845	6.47282553018344	6.7462171282904	6.6340110012906	6.3445448976048	0.505574344310942	0.0795611256475417	0.373049291949513
Merged-chr4-62282675-2	chr4	62282186	62283186	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3743.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	6.37470724693255	6.38883775859518	6.26994081273547	6.85076453051751	6.87930704356149	6.80575402065371	0.790669417631665	0.00204628044027458	0.0315299477224167
Merged-chr8-40311302-4	chr8	40310792	40311792	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	3241.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	3.62118634747412	3.65565579266699	4.01060784046565	4.08118967988084	4.19193413828427	4.38007750024273	1.38568875402042	0.00836898984070712	0.0888789925546341
Merged-chr16-57121623-5	chr16	57121089	57122089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138599)	promoter-TSS (NM_138599)	-125.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	7.14334227979996	7.16930026948892	7.16665251731431	7.27490845548239	7.13160291066873	7.23613359701222	0.0799240183347327	0.73045680599606	0.930884711548651
Merged-chr6-31219858-2	chr6	31219358	31220358	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	-493.0	NR_040260	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	6.65883484430861	6.74913077318337	6.68572264735269	6.11599065006038	6.46039305985266	6.19157584091921	-0.682850477874928	0.0142233033212535	0.128091044680708
Merged-chr7-118855258-1	chr7	118854758	118855758	+	822.0	f0_balb.idr	promoter-TSS (NM_001081446)	promoter-TSS (NM_001081446)	355.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	5.5216084283836	5.96961008603705	5.60521537219093	5.74269576734829	5.26545677664865	5.2992524770768	-0.4929029828654	0.179797666515696	0.561310330373242
Merged-chr9-32676295-3	chr9	32675787	32676787	+	674.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19755.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.9097052129805	6.97254958215493	6.65705050738649	6.80235271259502	7.03580239926489	6.43870093464187	-0.0984779343835711	0.733940106327489	0.932325051544019
Merged-chr2-35130968-2	chr2	35130468	35131468	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 11 of 43)	B4A|SINE|B4	-1266.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	3.12601579956148	3.47916850035696	3.58089211689715	3.30264526511482	3.30549741608562	3.64994357821785	0.0658192244248392	0.918056887182393	0.981747877135909
Merged-chr10-127289956-4	chr10	127289440	127290440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-853.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	9.56870363865712	9.66238895819648	9.05248773538253	9.30302854317481	9.74159322675331	8.92200243615931	-0.11574641625049	0.686748327295614	0.91687527626078
Merged-chr6-113469282-4	chr6	113468781	113469781	+	942.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145826, intron 14 of 14)	intron (NM_145826, intron 14 of 14)	-2174.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	3.57828769169159	3.38637024295641	3.59007033043424	3.48606024432077	3.38729509546009	3.50099163312062	-0.232220775123557	0.688388808574793	0.917216444209858
Merged-chr18-4031157-4	chr18	4030589	4031589	+	925.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-134743.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.18577400665959	3.10058300235756	3.08580275140603	3.13659556392176	2.83833625546455	3.43283858094441	0.117178469173398	0.867316644020923	0.96931826298411
Merged-chr4-133907420-6	chr4	133907107	133908107	+	923.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19810.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	5.53638222813438	5.41932483112209	5.46044504068486	5.16351813067463	5.22331845840734	5.24825303605752	-0.521529818660213	0.123244781848495	0.46968404085978
Merged-chr7-4684208-2	chr7	4683708	4684708	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024172, intron 2 of 7)	intron (NM_024172, intron 2 of 7)	773.0	NM_001360629	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	4.87887331477763	4.59876139315848	4.94400443662633	4.72225133824724	4.77707444328025	4.5899190985714	-0.239609825161301	0.560594465999025	0.865261302076164
Merged-chr16-57216213-4	chr16	57215736	57216736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14765.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	7.51587708197181	7.51847086104168	7.40578935151045	7.56751531912274	7.91020775847763	7.37394826949765	0.239159833207678	0.343881912315242	0.732645864957409
Merged-chr4-121098122-4	chr4	121097627	121098627	+	939.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172700, exon 1 of 10)	5' UTR (NM_172700, exon 1 of 10)	116.0	NM_172700	230709.0	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	4.76950540076552	5.03360488945571	5.10706005776068	5.10181762521031	4.80981292607217	5.00239301677114	-0.00191214750192372	0.996099179897989	0.998961028701257
Merged-chr9-44444622-4	chr9	44444111	44445111	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3743.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	3.5831945964026	3.49292263968929	3.46216739328116	3.5174322374675	3.43929940401923	3.69170712363423	0.109954038441688	0.84772525091965	0.964318271116593
Merged-chr19-59028140-3	chr19	59027654	59028654	+	949.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	47915.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.4843872726051	3.31118656765416	3.52807224621788	3.63787247985258	3.55401573913112	3.75231916277474	0.741573829708721	0.19612647424719	0.583916261240884
Merged-chr19-34520382-4	chr19	34519880	34520880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7094.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	7.42021487206039	7.46250007156526	7.39931285929539	7.46226972265922	7.8893317948928	7.73487187446572	0.411526298259551	0.0861473189221115	0.388728097227281
Merged-chr6-93127618-4	chr6	93127118	93128118	+	959.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187036.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	4.6160940313533	5.35544395394482	5.060562358601	4.11378540480234	3.79859656660567	4.11001774326108	-2.72659892308282	1.05878549677004e-07	7.51701566682948e-06
Merged-chr2-136921147-4	chr2	136920651	136921651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	21800.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	4.10924044959142	4.00562076316732	3.90828815163775	3.57925603711295	3.71433956379041	3.77321186104785	-1.04024221709447	0.0489817414356251	0.281213111691547
Merged-chr19-8252215-4	chr19	8251694	8252694	+	909.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33294.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	4.60267743874217	4.58234342988289	4.8896145457037	4.64209334591447	4.50048574024318	4.73933524676644	-0.156876538230485	0.708495408243935	0.923708659245088
Merged-chr6-120153760-2	chr6	120153260	120154260	+	709.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-40063.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.46963782629127	5.54912378693042	5.72828058076056	5.07840316852937	5.03965460117392	5.3621170521739	-0.83971360857537	0.0169999192203488	0.144886743673746
Merged-chr1-152605702-1	chr1	152605202	152606202	+	860.0	f0_balb.idr	intron (NM_001346119, intron 2 of 17)	B4A|SINE|B4	19515.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.31053814349578	5.04226438616966	4.77433035740158	5.18901003407719	5.22191800319578	5.0393386994069	0.174392006573883	0.654616806795902	0.903872559164033
Merged-chr17-6430113-4	chr17	6429612	6430612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009342)	promoter-TSS (NM_009342)	0.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	6.57933317102248	6.66012134212261	6.44876937935862	5.70025969229071	6.12743731832028	6.4551535882031	-0.733210660694119	0.0226037974947156	0.175106301269928
Merged-chr13-102665924-3	chr13	102665356	102666356	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27691.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.94681740703202	3.55370622472345	3.72360598653177	4.36196291626171	4.26849381319929	3.90812392613063	1.3379487658513	0.0146193321519185	0.130275594492415
Merged-chr1-161999543-4	chr1	161999054	162000054	+	892.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-5415.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	6.41064719582605	6.5265270151682	6.43992660608246	6.09170535770449	6.16044500775269	5.97637290146226	-0.623809880536039	0.0246669629801909	0.185477015692728
Merged-chr8-26887127-7	chr8	26886645	26887645	+	966.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-62722.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.7922654863494	5.67002196299975	5.61214115119042	5.70205453590136	5.86022550306353	5.49869171023367	0.0196371533567213	0.951715208061547	0.988927145527245
Merged-chr4-127045656-4	chr4	127045168	127046168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15486.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	6.63788600255981	6.70702471772057	6.8287951053961	7.30510301047635	7.27754363186021	7.01555366131035	0.750884816065459	0.00269299130780379	0.0388081781676027
Merged-chr2-30982097-4	chr2	30981588	30982588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144885)	promoter-TSS (NM_144885)	-147.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	6.95954623542279	6.90368106916117	6.7351101036505	6.95367920234281	6.82462686541768	6.64408886297314	-0.086929723140979	0.736090113940415	0.933046642264646
Merged-chr1-85109457-2	chr1	85108926	85109926	+	676.416626	f0_balb.idr|f1_balb.idr	5' UTR (NM_213615, exon 1 of 7)	5' UTR (NM_213615, exon 1 of 7)	427.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.69903147720787	3.89387304312176	3.72650108993984	3.7741697952507	3.53165126169681	3.79652763679152	-0.265556816835588	0.627119785314876	0.893012220773881
Merged-chr17-35813878-1	chr17	35813378	35814378	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-7835.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	6.59740427188085	6.33423307143124	6.51952882377216	6.53702118397631	6.67419507657265	6.59590199788596	0.191881344466332	0.472101010907293	0.820487582506336
Merged-chr2-91484309-2	chr2	91483809	91484809	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	intron (NM_172668, intron 16 of 37)	26778.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	7.07815723048776	7.40398151734432	6.97951026251486	7.34926595191047	7.613791444931	6.8391964126886	0.216860568479996	0.472487373916734	0.820550293768681
Merged-chr10-59748989-1	chr10	59748489	59749489	+	663.0	f0_balb.idr	intron (NM_001359267, intron 4 of 11)	L1MEf|LINE|L1	46426.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	3.42508153495668	3.18444411940756	3.31896457026483	3.31415282874631	2.89898954821631	3.09777964623132	-0.845791728177207	0.211700901156245	0.604073607267779
Merged-chr8-121654003-2	chr8	121653503	121654503	+	817.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2070.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	3.08405047870139	2.96963877219227	3.57189990865932	3.10556156332932	3.11334236369513	3.3934526939132	-0.0884785052197016	0.89861163115854	0.976398924551551
Merged-chr4-141161611-4	chr4	141161109	141162109	+	963.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	13687.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.30229999140408	6.1374040205017	6.47862426002265	6.4881125296501	6.56752136936629	6.68512356863152	0.447688568883508	0.10505122796345	0.432406256520669
Merged-chr6-37871492-4	chr6	37870999	37871999	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145076, intron 1 of 18)	CpG	688.0	NM_145076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	6.16734223149257	6.04624971648999	5.97893448133652	6.45129604010616	6.10360924159413	6.06395287801949	0.253647326273431	0.397807636916025	0.774593722474986
Merged-chr4-133465307-4	chr4	133464797	133465797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-14836.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	7.06863256292308	7.27402946086906	6.98968774542908	5.46578943584232	4.93183723249443	5.2163662480998	-3.34435100526307	5.16018686603047e-24	7.40291084049419e-21
Merged-chr10-93049643-2	chr10	93049148	93050148	+	610.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	31948.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	2.20906115062146	2.1455613452174	2.12585107173159	2.43473137611636	2.45384856508345	2.53566322659799	2.23723758233769	0.0149477625836272	1
Merged-chr3-84325193-4	chr3	84324713	84325713	+	785.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20438.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	2.80115544958879	3.01614255898065	3.03101380374661	2.77867355969329	2.55588951789184	2.53916476104733	-1.75838190141074	0.0275578552597273	0.197988955734786
Merged-chr9-13749157-4	chr9	13748677	13749677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-4.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	8.17124938226118	8.32049311113485	8.11968840748807	8.18266270140073	8.19066737414369	7.89682171839354	-0.149828869162037	0.499157029231754	0.834298784414566
Merged-chr12-12262766-2	chr12	12262266	12263266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	627.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.29493450272404	7.45451675878183	7.23645350042185	7.52068692162617	7.58880232240487	7.418809546774	0.262919223721276	0.255611031819117	0.652679746869433
Merged-chr3-8970795-2	chr3	8970295	8971295	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-6649.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.64493916857543	4.81226066047621	5.16949890379313	5.01427747883479	4.97539189611606	5.20189859633349	0.391973169202905	0.329165245315926	0.721152738507735
Merged-chr13-41029497-4	chr13	41028993	41029993	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 11 of 11)	intron (NM_001145802, intron 11 of 11)	13243.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	4.07717307539068	4.07130412497816	3.91266462890172	3.71505120632671	3.82283944338186	3.93223709208731	-0.632521197870369	0.215470927484207	0.608899282194137
Merged-chr18-4288794-1	chr18	4288294	4289294	+	617.0	f0_balb.idr	Intergenic	RLTR11A2|LTR|ERVK	64159.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.88233842074631	3.96157703281271	4.03805715396369	3.88584895831671	3.60932079411515	4.0137289456624	-0.382493459427355	0.46953580981514	0.818977178978635
Merged-chr9-90237971-4	chr9	90237454	90238454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32815.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	8.41814318688511	8.69809658604189	8.38825843114555	8.42961282276415	8.65906579485161	8.19664977673678	-0.0879088415376274	0.710772987509448	0.924469296037236
Merged-chr8-125489026-3	chr8	125488518	125489518	+	864.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3815.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.53606165059739	4.67323543660046	4.76150031925687	4.40742091693913	4.18744947852296	4.47658486925446	-0.762840636955249	0.0815235000295267	0.377653234075095
Merged-chr8-70537315-2	chr8	70536805	70537805	+	920.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2370.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.82454773266234	5.41856829998638	5.65987884750018	5.52935164063346	5.58639649978448	5.72176386411615	-0.0635704630672525	0.849028706653952	0.964516084691952
Merged-chr2-152741867-4	chr2	152741360	152742360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5609.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.1231915755657	6.03609945920901	5.85491385439532	6.02006779013726	6.17523510727659	5.94149454453016	0.0694717509522398	0.815839965404962	0.956495686206055
Merged-chr9-65564339-2	chr9	65563839	65564839	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	15748.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.22012497263766	7.13601800431142	7.23388143568133	6.90143519141062	7.16996249259168	6.84055618834275	-0.311879878883891	0.212595042506543	0.60512503641463
Merged-chr11-107477939-2	chr11	107477439	107478439	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1589.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	3.00020918510439	3.16500208510701	3.18618159606572	3.36744097657326	3.04711319921406	3.31454786961041	0.541540044431744	0.407775443540923	0.781873423959653
Merged-chr4-126046935-4	chr4	126046453	126047453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025544)	promoter-TSS (NM_025544)	25.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	6.29891887259636	6.52950945030254	6.38352480594312	6.4987560956929	6.37218016586121	6.24364361225137	-0.0487210629761231	0.860266878341912	0.967451406015177
Merged-chr2-49742626-2	chr2	49742126	49743126	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	intron (NM_008449, intron 19 of 25)	-45060.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	3.70177721889286	3.88414611394965	3.85913408533598	3.73304460505563	3.62766891770158	3.87923202169804	-0.240447540098556	0.652117752880788	0.902896807825606
Merged-chr4-97920547-2	chr4	97920047	97921047	+	775.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	142921.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.7582544974316	3.61161291297849	3.90348542018526	4.11543331185099	4.04521070720022	4.02147354883956	0.956896955517203	0.0625734211790314	0.325291092681797
Merged-chr10-41605095-4	chr10	41604602	41605602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358562, exon 29 of 48)	exon (NM_001358562, exon 29 of 48)	37086.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.85496692169269	5.43420124434298	5.55525755769954	5.88310742105692	6.0840570075559	6.04776992672963	0.673654642206443	0.0381397771384829	0.241664222977375
Merged-chr2-33430946-2	chr2	33430446	33431446	+	935.142822	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085507, intron 1 of 2)	CpG	378.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	6.50377357835393	6.54589039788877	7.02419138300676	6.87386566972536	6.52665330865683	6.90051620611674	0.107402942059368	0.717708122972351	0.927156192207595
Merged-chr14-45663729-4	chr14	45663200	45664200	+	929.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5557.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	5.83069987394981	5.94809979508479	5.98002516247738	7.06610391085359	7.26928153883525	6.47940332981249	1.73694769787794	3.20116303995641e-08	2.59865730954822e-06
Merged-chr13-73489444-4	chr13	73488929	73489929	+	769.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 3 of 13)	intron (NM_145376, intron 3 of 13)	22046.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.45486892359336	5.72322483650382	5.13295640272236	5.76109130416033	5.34590888360783	5.2710779066586	0.0183769026215662	0.961860143788441	0.990684873115088
Merged-chr7-120917668-4	chr7	120917162	120918162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025298)	promoter-TSS (NM_025298)	-82.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	6.71540480235135	6.68187425880667	6.64923403474837	6.88348859307954	6.41344296130352	6.36209832459169	-0.16576078508802	0.563747600149993	0.865992481769395
Merged-chr7-141462808-2	chr7	141462308	141463308	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_152219, intron 1 of 1)	intron (NR_152219, intron 1 of 1)	1096.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	3.17720773104967	3.12299071808518	3.56098205213253	3.14643528964788	3.03254078340827	3.15453778776503	-0.774831497780158	0.242280349146744	0.639370021259067
Merged-chr16-57501001-4	chr16	57500495	57501495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-48247.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.49730759275684	7.26171423937075	6.85215065099163	7.02747301399882	7.15096830860232	7.08274194258925	-0.228826598153158	0.402130853740043	0.77787096574423
Merged-chr17-10394025-2	chr17	10393525	10394525	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62191.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	5.76787100802018	5.65391767158538	5.75548991348493	5.40051538909362	5.36613360458019	5.16171023977281	-0.765120707828827	0.0212266936957074	0.167927113354094
Merged-chr12-113016989-2	chr12	113016489	113017489	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	2481.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	3.81217490127277	3.81924623712997	4.30152906908662	3.8513437587326	3.46521481416733	4.51542783468672	0.0709643077568644	0.911570660095075	0.980154516820379
Merged-chr10-12736945-2	chr10	12736445	12737445	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	124790.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.57480427257818	2.67905085066493	2.78757898942823	2.89117802175223	2.81233906870609	2.86078962145287	0.925891279260905	0.205581416738497	0.596131993192832
Merged-chr12-52474579-4	chr12	52474075	52475075	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6034.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.05330386698934	3.90877490837861	4.0548183209457	4.08956499700263	3.9991138155617	4.21397811270744	0.270412992161157	0.57886179886599	0.872437129840066
Merged-chr11-106788495-4	chr11	106787972	106788972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	22.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	8.27633728818234	8.24124160585808	8.06655682824476	7.95661160053978	8.28352205177615	8.09401436985321	-0.111246095349575	0.618227816198872	0.88921047052262
Merged-chr2-167698640-2	chr2	167698140	167699140	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	7463.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.69402912263565	6.17263210184561	6.51810736416848	6.43411769413348	6.95012408354366	6.46900983030888	0.274195975208872	0.386576370714333	0.767131316757601
Merged-chr1-86437592-4	chr1	86437063	86438063	+	943.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11234.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.70993051498419	3.06476421679605	3.21225871402485	3.33901298029523	2.94949049193948	3.4566657874509	-0.375069468438873	0.6034019294841	0.882544198306255
Merged-chr4-152132427-2	chr4	152131927	152132927	+	709.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207688, intron 3 of 10)	intron (NM_207688, intron 3 of 10)	-3502.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	2.19995007127025	2.06434797704637	2.23161844118484	1.84960195794048	1.93206532462104	2.04402771942581	-1.88699350717107	0.0616461316633713	1
Merged-chr1-165738087-4	chr1	165737581	165738581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25677.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.80824218033985	6.6680805489748	6.47175994190063	6.73404821394433	6.7797980583453	6.68902223870459	0.113174853087721	0.665678733365848	0.907880610488534
Merged-chr11-73177713-4	chr11	73177209	73178209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	626.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	7.43215805564469	7.55653970834315	7.65905122428203	7.47753553664852	7.56612963803366	7.48836241647687	-0.0514072660820057	0.819705876963755	0.957288083214325
Merged-chr10-67003130-11	chr10	67002627	67003627	+	922.939392	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1948.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.71582800668528	5.71548453644236	5.55529696311398	5.4751898931987	5.38619934684628	4.97046971075644	-0.686158913674264	0.0548949100346232	0.301045762810762
Merged-chr17-78882567-4	chr17	78882065	78883065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011163)	promoter-TSS (NM_011163)	7.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	6.06626247579724	5.9567896668574	6.11384809426939	6.04546391833159	6.57831490454656	5.75340522546129	0.248202986695652	0.474228680392905	0.821322538467505
Merged-chr10-80676534-4	chr10	80675978	80676978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021462)	promoter-TSS (NM_021462)	-185.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	7.74343624716642	7.8697043600703	7.34772393254501	7.52011339536975	7.96341433474249	7.19367907400155	-0.0988008863773872	0.740782192930611	0.934667811508694
Merged-chr4-108619406-2	chr4	108618906	108619906	+	713.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	-550.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	5.57030246319461	6.08758389244144	5.97375571076762	5.67785258625479	5.75789387905481	5.89690102016664	-0.212467004206028	0.521993808620627	0.847400826543341
Merged-chr2-181496266-8	chr2	181495768	181496768	+	949.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-874.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	6.34210908249438	6.70790117808308	6.36486860030745	7.03494096537911	7.33645178251508	6.86092354163191	0.949859328900382	0.000949459358433131	0.0172872241349024
Merged-chr2-71327302-4	chr2	71326798	71327798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	40256.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	7.93432744986999	7.86936202226905	7.69545574591672	7.9080467406702	8.32110292018756	7.93073952871223	0.332639616899986	0.167481004589687	0.543354082120217
Merged-chr18-47327217-3	chr18	47326715	47327715	+	800.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	41653.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	3.13021798491428	3.22733130051102	2.99726970578682	3.06795733855386	2.90792300049235	3.24575033000445	-0.227746323815147	0.73652009752305	0.933162099179542
Merged-chr2-60046759-1	chr2	60046259	60047259	+	737.0	f0_balb.idr	intron (NM_001001182, intron 2 of 35)	L1MD2|LINE|L1	78981.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	4.64304662810381	4.6484137715842	4.41782446232963	4.20426661991294	4.01704583297505	4.39850579725169	-0.990523921485888	0.031432073785248	0.214781965633811
Merged-chr7-45526944-4	chr7	45526473	45527473	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008654)	promoter-TSS (NM_008654)	643.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	7.07127278681566	7.4191113803998	7.02599953567547	6.87086658338845	7.21501837716224	6.85349713884873	-0.287451424352218	0.292734519067609	0.689885476081214
Merged-chr7-13054405-4	chr7	13053882	13054882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145819, intron 1 of 5)	CpG	382.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	4.33310417374483	4.29390685983715	4.62540051327997	4.38364872432404	4.58669797354105	4.90179454080612	0.536240388047431	0.238770079333978	0.635477890264255
Merged-chr6-15729012-4	chr6	15728502	15729502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8341.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.42947515194057	7.50101135586511	6.97331938604875	7.15267929221877	7.34738432576844	6.98811420853101	-0.227247719049842	0.404304808660155	0.77945770433258
Merged-chr7-81762903-4	chr7	81762392	81763392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025997)	promoter-TSS (NM_025997)	-61.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	6.3313478195957	6.48986620461993	6.24074899231506	6.3330078135889	6.11048782207705	6.17420087946677	-0.260745323325644	0.355808577851548	0.742593358585589
Merged-chr10-43541022-4	chr10	43540535	43541535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026411)	promoter-TSS (NM_026411)	-17.0	NM_026411	67851.0	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	5.58334638455114	5.55473149908673	5.75658173975302	5.6117435718736	5.49804115255644	5.40254879022249	-0.219580964628589	0.500350771118862	0.834978949366358
Merged-chr15-27625502-4	chr15	27625007	27626007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5186.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	6.76856476902469	6.68461244612961	6.34076213646379	6.60748870422333	6.57506555072305	6.40104286076456	-0.136937081927874	0.623720103018192	0.891566739256228
Merged-chr9-55166899-3	chr9	55166403	55167403	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346657, intron 2 of 11)	intron (NM_001346657, intron 2 of 11)	16820.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	4.71898906894811	4.91815320692374	4.76115987613582	4.87472456583899	4.71044426573412	4.82698756459745	-0.0096330618477059	0.980529687602441	0.995512982807197
Merged-chr11-119086333-4	chr11	119085840	119086840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007625)	promoter-TSS (NM_007625)	-103.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	7.84863182246727	7.55793876320921	7.51148238875396	7.4200972013144	7.07583528356937	7.40326807641804	-0.511726899448142	0.0426165278832828	0.258891842517983
Merged-chr1-66817024-4	chr1	66816534	66817534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	CpG	561.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	8.64231035132527	8.68517704206208	8.56231402756786	8.4963255329784	8.6070304730243	8.71519190855486	-0.0349778703084671	0.862665738838303	0.968083292979043
Merged-chr1-181245203-4	chr1	181244697	181245697	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33219.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	4.433397448289	4.43685464689739	4.52785008981646	4.2981586698237	4.2576317123688	4.63226717435545	-0.176755382373347	0.692590267678573	0.91870248759071
Merged-chr5-21024718-3	chr5	21024217	21025217	+	951.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356591, intron 1 of 16)	intron (NM_001356591, intron 1 of 16)	10530.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.33372275685255	5.26285863744255	5.35478899044314	5.55783761815555	5.33251503377065	5.66865281223823	0.391237490730837	0.252283761326319	0.649747035175199
Merged-chr13-111798992-1	chr13	111798492	111799492	+	649.0	f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10001.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.16651731458232	4.12690768469183	4.03220077856967	4.36459566625378	3.94964417577977	4.33266461038059	0.301361295930876	0.541225995062427	0.856768688947632
Merged-chr5-120588024-2	chr5	120587524	120588524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029408)	promoter-TSS (NM_029408)	589.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	4.69820409712416	4.98125039482486	4.91339075923635	4.93632066121208	4.90072931265358	4.79005681556045	0.0265880701437528	0.945798844312149	0.98796006280508
Merged-chr2-27720554-2	chr2	27720054	27721054	+	639.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	9971.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.40094427064556	5.55830681429977	5.70147766944188	5.41430085794642	5.21413314516431	5.73819128914059	-0.179711495765086	0.614328496190013	0.887435546271868
Merged-chr13-74001307-1	chr13	74000807	74001807	+	594.0	f0_balb.idr	Intergenic	Intergenic	-8112.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.19501106617184	3.16308301994417	3.06991954835918	3.03518118369277	3.04737703351029	3.14210056159172	-0.327702814013664	0.61293967617833	0.886969289870611
Merged-chr9-21367659-4	chr9	21367131	21368131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-240.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	6.93324571958509	7.07853499664959	7.23160609213839	7.14177433543225	7.38731451858207	6.88327399101111	0.126983138954948	0.635416429392839	0.89649427032154
Merged-chr11-4535674-2	chr11	4535174	4536174	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 1 of 17)	intron (NM_028860, intron 1 of 17)	59141.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	5.10877048983166	5.2679346692302	5.19670898930066	4.81851815910985	4.91421105259846	5.13126550529617	-0.50935003065424	0.170382101610224	0.547769223545867
Merged-chr10-99270599-4	chr10	99270102	99271102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7371.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.71637995755159	3.78390555704751	4.29301782953546	4.39222444136329	3.83304369717643	4.17750935139603	-0.453259158097311	0.436381190632955	0.799472869647494
Merged-chr2-6267764-4	chr2	6267252	6268252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-54758.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	6.10921397804127	5.89871855708641	5.58491297615477	5.57977245122365	5.57913959668367	5.39981773708782	-0.665765006103743	0.0481967188351034	0.278342072517441
Merged-chr10-6983884-1	chr10	6983384	6984384	+	542.0	f0_balb.idr	intron (NM_001039652, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	-3419.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	2.91664324485574	2.98646716156197	3.13291366716326	3.01691702239598	2.89895357078304	2.91064830839124	-0.317969228293564	0.640469080007191	0.898483031109382
Merged-chr6-8427834-4	chr6	8427267	8428267	+	990.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302353, exon 5 of 5)	3' UTR (NM_001302353, exon 5 of 5)	81394.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	5.62685897723193	5.37838707863188	5.16768131825416	5.44715082818651	5.46674050956299	5.16151327159727	-0.0792486746683697	0.82759599074636	0.959481887246358
Merged-chr7-80299724-4	chr7	80299219	80300219	+	882.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145150, intron 1 of 13)	intron (NM_145150, intron 1 of 13)	5268.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	4.44072470556619	4.5020827460264	4.41299726434726	4.28195079159442	4.55546814495894	4.89645934244437	0.342659629797198	0.452038875501545	0.809286173636239
Merged-chr15-25322253-4	chr15	25321745	25322745	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91519.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.61870916196823	7.08163486961525	6.90857362163667	6.84784477248571	7.10501336523006	6.86582823922816	0.101288983565033	0.71137631297111	0.924661173262022
Merged-chr6-114395184-2	chr6	114394684	114395684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-2752.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	3.19515629041049	3.26405582159388	3.42133713701692	2.96664467085614	2.96773158810908	3.04654269413047	-1.34688820517009	0.0427663104202812	0.259284956081144
Merged-chr18-69415710-4	chr18	69415259	69416259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	69599.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	7.18941105750581	7.15099003416772	7.22837515563141	6.78728289652857	6.63199391058988	6.86204221536602	-0.662305628831127	0.00668507816068314	0.0755571833189517
Merged-chr5-113650557-4	chr5	113650012	113651012	+	978.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-122.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.70078217255612	8.0097035889731	7.56402489520449	7.69368434545328	7.54786500636436	7.07712511732831	-0.438987473964013	0.113024141136636	0.449191427529329
Merged-chr8-26883934-3	chr8	26883446	26884446	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59523.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.32430612054703	5.17433145482861	4.96022770364416	5.31292352160272	4.92769185175324	4.74108314478671	-0.305363069288349	0.450844949958796	0.808628785052843
Merged-chr2-180701252-4	chr2	180700735	180701735	+	933.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	867.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	7.8894169298711	8.32257625448946	7.62470336428236	7.79381381217301	7.72717451545233	7.69084585969856	-0.355860267274195	0.17736153192012	0.558275118873952
Merged-chr6-135188770-1	chr6	135188270	135189270	+	974.0	f1_c57bl6.idr	intron (NR_040296, intron 1 of 4)	B4A|SINE|B4	290.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	4.38283099024892	4.46836581443292	4.48155904145214	4.45502136111858	4.57918931087803	4.54817587875557	0.218248619853077	0.607187373141455	0.884448083779426
Merged-chr9-77826435-2	chr9	77825935	77826935	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71900.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.25114234774404	5.28156395412839	5.16342723859565	5.20261844204553	5.24200700758427	5.3240410157854	0.0333152985201976	0.923319672505698	0.982699256056545
Merged-chr4-59442599-2	chr4	59442099	59443099	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3966.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.74954611796941	2.89392189399895	2.8095784217425	2.58051477441691	2.47226413161112	2.82246740415993	-1.07146352979232	0.169827049982579	0.546948799154297
Merged-chr2-158406098-2	chr2	158405598	158406598	+	760.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-3755.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	4.46731649464162	4.81832041140179	4.7597719149722	4.87400781259715	4.97883594588868	4.90041239285155	0.525494687011738	0.193162034254808	0.580302074097341
Merged-chr11-118739667-3	chr11	118739165	118740165	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	MLT1I|LTR|ERVL-MaLR	21376.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	3.09117924916016	3.42619017132165	3.21087822194063	3.15600262173425	2.9885687902789	3.39300090111201	-0.290824388620188	0.663796724746579	0.907336430540351
Merged-chr12-106031776-4	chr12	106031276	106032276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	21513.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	6.07050730315208	6.28832386773497	6.15947455417297	5.87787390398738	6.13584208430673	5.76598706290557	-0.389809619966733	0.202846592895786	0.592772302593993
Merged-chr11-70687196-4	chr11	70686697	70687697	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	908.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	6.85875296552257	6.72538546362391	7.26428278353293	6.94026240487966	7.15516979614561	7.15079516404762	0.192199969819979	0.482969350925377	0.825908436418655
Merged-chr19-43920673-3	chr19	43920187	43921187	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	19511.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.49872465310853	5.6854499018712	5.64810470943947	5.09429657927871	5.07380866258188	4.82836960204769	-1.19167122739053	0.000908716435503225	0.0167358293858682
Merged-chr8-83332548-4	chr8	83332045	83333045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-59.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	6.39320958066997	6.50648667080789	6.30654337114186	6.39209335985553	6.36062150602179	6.08508025938342	-0.18723813878074	0.505995374224911	0.838234910776985
Merged-chr10-51553556-4	chr10	51553052	51554052	+	934.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36908.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	3.52238427102063	3.36102557921815	3.2903117293223	3.35408870624699	3.09162120509314	3.24507123868478	-0.674229469483096	0.283652181958451	0.681376161050487
Merged-chr12-85498039-4	chr12	85497539	85498539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24149.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.23666872370181	7.9828285328559	7.84004378331607	8.05164303170183	8.09956937181321	7.55851827012196	-0.142699225083342	0.583460521725279	0.874062789752135
Merged-chr10-93539960-4	chr10	93539468	93540468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027908)	promoter-TSS (NM_027908)	65.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	5.00645233549685	4.75230672777027	4.5843852109681	5.1316595536897	4.97058384079541	4.65209413592161	0.311928719971624	0.461337745029643	0.814992635038861
Merged-chr17-26123442-4	chr17	26122956	26123956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-47.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	5.83000241209609	5.85190557758955	5.83609978851551	5.37235305934282	5.61099024250945	5.58485802659637	-0.570848353139564	0.0714192272229873	0.350618370922116
Merged-chr8-46742066-2	chr8	46741566	46742566	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	2321.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.92795535389136	7.20291321872192	7.05313191154443	7.19753039163593	7.63040666817923	7.11111069437376	0.414452773354654	0.126594350592873	0.475549804679232
Merged-chr9-108341175-4	chr9	108340648	108341648	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329528)	TTS (NM_001329528)	2068.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	8.41384394220075	8.35508161951445	8.14116377462147	8.68103928908629	8.87895216989599	8.32362909720549	0.475515243048676	0.0486915786195314	0.28011123297663
Merged-chr13-43492846-4	chr13	43492350	43493350	+	829.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11877.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	2.97455449308921	2.98810051216603	2.96205660971648	3.11582437612801	3.11761810491186	3.1532355620855	0.694534921945257	0.289445551929128	0.68709875285059
Merged-chr10-127612218-2	chr10	127611718	127612718	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	8930.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.27925654388288	4.129559192997	4.66378547583319	4.51156071404786	4.01238420699783	4.50231087860508	-0.0313038232247124	0.950636701164963	0.988462504713506
Merged-chr5-120518916-2	chr5	120518416	120519416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	B1_Mus1|SINE|Alu	7724.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	6.46782531315005	6.04323693088153	5.85328416799433	6.42311925255845	6.46128887937161	5.9162096356387	0.236542500324962	0.488899775802125	0.829423271678195
Merged-chr3-28012417-4	chr3	28011933	28012933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	28262.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.8095608978462	5.73183944940185	6.00382814752483	6.16448619377077	6.26558871704348	5.94811780303414	0.518392878817153	0.0870600340066363	0.39114177009913
Merged-chr1-165641603-4	chr1	165641111	165642111	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7070.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.78652248897566	6.99723673992219	6.68565047061323	6.81928666310144	7.23991384090706	6.72811715654173	0.193750979257947	0.49461857962461	0.832098209532918
Merged-chr14-79531012-2	chr14	79530512	79531512	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	15338.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	4.33285724157706	4.63927851845418	4.73879584811874	4.35826426113312	4.28489037898685	4.49973006807404	-0.507038445417145	0.258301429316564	0.655806466621081
Merged-chr2-180727781-2	chr2	180727281	180728281	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	2442.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	3.37765865703749	3.26052501712794	3.5904919187297	3.12107548461127	3.11052883375779	3.65920821467478	-0.372221263929531	0.576764677759134	0.871715684727395
Merged-chr18-57355350-1	chr18	57354850	57355850	+	814.0	f0_c57.idr	intron (NM_028447, intron 1 of 8)	intron (NM_028447, intron 1 of 8)	617.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	7.40816354108143	7.25184613901759	7.01347534054286	7.22507791710813	6.83181276221467	6.73769430427004	-0.434174642732774	0.115650548722573	0.454022364177327
Merged-chr11-83560605-4	chr11	83560100	83561100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	18036.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	5.18273698466863	5.14002382514118	5.24507148890051	5.15204448196338	4.98168757494079	4.93024596793722	-0.33468133594997	0.356844584105821	0.743460467581681
Merged-chr11-82568125-2	chr11	82567625	82568625	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65228.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	5.40751593310725	5.98302428803845	6.02896188829658	5.8246195643244	5.78461340407035	6.08924799704347	0.120181583586435	0.731244863937864	0.931357644172417
Merged-chr12-108913038-4	chr12	108912542	108913542	+	966.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	18770.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	5.22280596328375	5.27740509405007	5.22870505641882	4.90626843814451	5.12731141940464	5.35291487038502	-0.226285085123264	0.537201903859232	0.854346835765953
Merged-chr2-26928346-3	chr2	26927853	26928853	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	5158.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	3.28966816204256	3.44503494485406	3.51793064775212	3.49151919647192	3.25124340970622	3.37069242963845	-0.174685042185409	0.772102692119094	0.943680976839558
Merged-chr11-96968568-2	chr11	96968068	96969068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9120.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	6.15667234313103	6.01804959026584	6.07774624293558	5.58431685010479	6.06160623646662	5.8596204572617	-0.39376222084627	0.213954341055965	0.607081986287297
Merged-chr16-4723009-4	chr16	4722507	4723507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-3354.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	7.50511775057636	7.15362710097716	7.6492037098363	7.63361929955812	7.94750632581245	7.58545975286505	0.423924574253367	0.104627478454019	0.431687570149352
Merged-chr2-153086054-1	chr2	153085554	153086554	+	637.5	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	20099.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	3.25947735926239	2.75654306479315	3.07147822334637	3.20695927041559	2.91054138574612	3.47283711089174	0.701365362764935	0.347397358642365	0.735497468013591
Merged-chr10-54074892-11	chr10	54074386	54075386	+	965.339417	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008548, exon 2 of 13)	exon (NM_008548, exon 2 of 13)	910.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	5.42109420245189	5.10397545720041	4.64481989002469	4.94493421209682	4.56738212330294	4.62426457200308	-0.836694923874792	0.0615083458530276	0.321764519158728
Merged-chr8-35378089-2	chr8	35377589	35378589	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	2348.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	3.18379875000949	2.94027399156682	3.34456225081292	3.20695957876349	2.85749347364468	3.46638393891265	0.138640022047003	0.846416809400217	0.964017504522256
Merged-chr5-121255127-4	chr5	121254621	121255621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 2 of 75)	intron (NM_181421, intron 2 of 75)	34902.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	5.49779623801172	5.20029832600861	5.24642134431809	5.56034796375749	5.69523596520859	5.55728992395344	0.545038110681919	0.108395743207271	0.439863106597931
Merged-chr2-161109171-4	chr2	161108673	161109673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-87.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	6.02189702705394	5.82167705033349	6.02335650018594	5.98353617309992	5.56507171254777	5.63546394693565	-0.383120748703253	0.236537750079698	0.632745673713476
Merged-chr15-103488451-3	chr15	103487937	103488937	+	610.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 26 of 30)	intron (NM_153505, intron 26 of 30)	-14597.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.16094999502651	3.02269959826349	3.12062241205104	3.02659453466999	3.01484551007899	3.24759026671355	-0.0325319082425835	0.960450754504064	0.990380695859216
Merged-chr11-58168439-4	chr11	58167908	58168908	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172558, exon 1 of 28)	exon (NM_172558, exon 1 of 28)	131.0	NM_172558	216766.0	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding	5.15822619214878	4.99290855203094	5.20445379174744	5.34882217864333	5.04835302505792	5.10172361784222	0.11476928978176	0.755044334111088	0.939211399759544
Merged-chr13-30769424-4	chr13	30768916	30769916	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	20183.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.48034333903842	4.31994409170952	4.01151100813209	4.25013047598144	4.03617947744569	4.13332476029815	-0.423659854658884	0.386888396265866	0.76724843120478
Merged-chr7-39523920-4	chr7	39523506	39524506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004139, intron 1 of 3)	intron (NM_001004139, intron 1 of 3)	6240.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	5.52254530038652	5.3284676347373	5.4154646924675	5.91541319675517	5.94409116155528	5.81427702668923	0.869545583128154	0.00592498450188018	0.0691647180741366
Merged-chr2-33847646-3	chr2	33847154	33848154	+	692.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	L1MB7|LINE|L1	40292.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.87136610042609	3.77443237484495	3.9474926070283	3.83463961040032	3.55534682851463	3.66195617058375	-0.579064904328803	0.283317686931193	0.681239650171093
Merged-chr17-71136813-4	chr17	71136317	71137317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-46715.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.24696408843857	6.17049018083929	6.12836418988868	6.03551260135063	6.38313668722685	6.03058365064839	-0.0197153715987918	0.947004646114805	0.988007649185823
Merged-chr11-69629009-4	chr11	69628493	69629493	+	933.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3978.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	6.39010291439821	6.470946389088	6.35197524725832	6.68779777463067	7.1392393609064	6.50894433719586	0.655806762499229	0.0269693194463133	0.19557151161254
Merged-chr10-10551120-3	chr10	10550625	10551625	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	7082.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	5.01450532283408	4.88084142980597	4.77024964973413	4.97927364323845	5.05461067865284	4.98888973010351	0.241513392960455	0.523345335354855	0.848182128595211
Merged-chr15-75841285-2	chr15	75840785	75841785	+	923.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 1 of 11)	intron (NM_172121, intron 1 of 11)	623.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	4.94788456686366	4.7067665413872	4.93655652337527	4.26825791901112	4.72953509538832	4.82487044603881	-0.546788729820063	0.21406734436922	0.607279519630221
Merged-chr15-38710381-4	chr15	38709890	38710890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18126.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	6.28434657246834	6.35473741449445	6.64002726626481	6.49701223753174	6.26644195549062	5.92325316487303	-0.277515235794729	0.372174926471119	0.756099728816208
Merged-chr14-31207372-2	chr14	31206872	31207872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022656)	promoter-TSS (NM_022656)	-546.0	NM_001347583	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	5.83874375401823	5.95911525301868	6.04815207146182	5.74467521126848	5.83473367645871	5.95347553108083	-0.184117403523726	0.541602873708059	0.856866097372447
Merged-chr9-118672347-2	chr9	118671857	118672857	+	733.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 10 of 27)	intron (NM_133721, intron 10 of 27)	-39335.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.75301749213249	5.76951390786966	6.08150848373008	5.77017376653053	5.90349283864971	5.9913499522286	0.0409566821363248	0.895469671939237	0.975665889379756
Merged-chr3-95673376-4	chr3	95672880	95673880	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14537.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	6.99608087355633	6.92450212993297	7.14532550877566	7.08629347805029	7.46999826714233	7.14122012174469	0.350224705057403	0.172272943886794	0.550849140713641
Merged-chr4-152476759-2	chr4	152476259	152477259	+	769.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355738)	promoter-TSS (NM_001355738)	53.0	NM_001355738	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	2.29490651997394	2.08807009786755	2.39034704349856	2.11093189617724	1.95329832304608	2.14159681647788	-1.47607694492316	0.120611985666203	1
Merged-chr5-99266508-4	chr5	99266007	99267007	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13580.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.89964959735437	4.74723853956347	4.80584685088607	5.30036508668664	5.44184895262139	5.29611313343606	1.12072778553825	0.00214592067020638	0.0325597678932408
Merged-chr14-49894937-3	chr14	49894441	49895441	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146494, exon 2 of 2)	exon (NM_146494, exon 2 of 2)	7000.0	NM_146494	258487.0	Mm.270514	NM_146494	ENSMUSG00000048933	Olfr722	MOR241-3	olfactory receptor 722	protein-coding	3.14584639904427	3.22056670114629	3.47477668278031	3.74120547930716	4.00289451172313	4.21504962655527	2.66372565891789	2.59203573448071e-05	0.000911187618904399
Merged-chr13-52593329-2	chr13	52592829	52593829	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	ORR1A3|LTR|ERVL-MaLR	-3553.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.39831965019937	4.05328814880506	4.27884457669503	4.26467030072851	3.82820532185207	4.25831646830837	-0.348895083886802	0.492430011209881	0.83104217378051
Merged-chr11-85813696-2	chr11	85813196	85814196	+	908.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	18692.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	4.40236194140568	4.51074022074164	4.59318758538387	4.1118832432503	4.31553445526145	4.54196543818165	-0.444770014497543	0.328123120623794	0.7203113757308
Merged-chr4-35225999-7	chr4	35225494	35226494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081343)	promoter-TSS (NM_001081343)	-114.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	8.51446190301609	8.6544147294639	8.28003631157938	8.35839643690839	8.65012417387936	8.07233323450543	-0.147414033647628	0.556652494417687	0.863705610149867
Merged-chr6-87993003-4	chr6	87992511	87993511	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11328.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	1.99549699940385	2.00135932835396	2.19905718028345	1.87807859033874	2.02322852513301	2.01237366766607	-0.71980454714199	0.448814286610622	1
Merged-chr6-89285912-2	chr6	89285412	89286412	+	921.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131021)	promoter-TSS (NR_131021)	-187.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	2.52990738170445	2.5211600817161	2.6484919219559	2.56871289668155	2.25028498265408	2.66101300741889	-0.377402071888126	0.653022088016744	1
Merged-chr9-94236865-3	chr9	94236359	94237359	+	648.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	301222.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	2.19786801754161	2.19502838124388	2.33054759461166	2.12114379400198	2.17971865037704	2.00655101288873	-0.970445576576235	0.295189459333481	1
Merged-chr5-147542460-4	chr5	147541966	147542966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	112310.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	6.56962771129563	6.80279852514099	6.73780269216842	6.86868834608057	6.86805273663038	6.73349973815772	0.191393600255872	0.453170360533594	0.809675535403562
Merged-chr15-72837127-4	chr15	72836638	72837638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-26814.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	5.98052366989353	5.90191981222849	5.62620612827831	6.16416704439612	6.14180869176738	6.2823588209645	0.579232875754762	0.0554049722823671	0.302681172192975
Merged-chr13-42150097-4	chr13	42149610	42150610	+	947.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 3 of 8)	intron (NM_007772, intron 3 of 8)	98089.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	2.42194428167727	2.40214208710103	2.39879301495449	2.07391365692548	2.02585247458006	2.14175556962404	-2.80002004453204	0.00625450172439223	1
Merged-chr17-32321313-4	chr17	32320814	32321814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131218)	promoter-TSS (NR_131218)	-76.0	NR_131218	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	6.48332015508429	6.85823552377506	7.01561713356853	6.74634562670666	6.91483512465516	6.81258756785292	0.0484670510995073	0.86144112581825	0.967819025542415
Merged-chr7-46846418-4	chr7	46845924	46846924	+	970.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	620.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	7.76580447385849	8.3559065773314	8.02936986012228	8.13378959576092	8.30587650962545	8.01893460663577	0.119912939996072	0.637013609358082	0.897256731014262
Merged-chr1-184034349-4	chr1	184033825	184034825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	-56.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	8.3218242896966	8.13528260725778	8.03891598817894	8.03691447904017	8.05640634688889	7.92752141244535	-0.231309636020003	0.286872083319221	0.6842105170644
Merged-chr10-60277682-4	chr10	60277170	60278170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	42.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	8.13102316498841	8.1347120858559	7.9948499370791	8.08476918439828	8.0966548880595	7.9193702808933	-0.0728786515197207	0.73144289641218	0.931393381661408
Merged-chr2-167335921-3	chr2	167335423	167336423	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13255.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.91605863691228	6.95576840167935	6.97103692068185	6.65092713235202	6.83254369839281	6.60196149836599	-0.371228488318912	0.140662489056494	0.501123667983077
Merged-chr5-66143854-2	chr5	66143360	66144360	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	7118.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.54957563132266	4.56568787533352	4.84169160440285	5.15062620103637	5.11168503955336	5.01514632521001	1.00682981625175	0.00982058055575865	0.0992290063003723
Merged-chr11-76631287-4	chr11	76630803	76631803	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-41167.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	6.35102838583288	6.24030789544891	5.83351413218391	6.4204573121694	6.60310132037097	6.16949823573616	0.407430993738597	0.195735695941029	0.583438527663774
Merged-chr14-30718746-1	chr14	30718246	30719246	+	591.0	f1_balb.idr	intron (NM_001166532, intron 1 of 20)	Lx3A|LINE|L1	3131.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	3.21740850417437	2.82061106522478	2.93455838319607	2.75293470886074	2.681686231328	2.8223692899472	-1.28989875231625	0.0827432120229827	0.380528225612576
Merged-chr9-45290771-2	chr9	45290271	45291271	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-21622.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	2.50613790919395	2.49784928387639	2.43097270682161	2.54328767073797	2.39339525245127	2.63288746498648	0.249015726327605	0.754191444599506	1
Merged-chr1-134060993-4	chr1	134060508	134061508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18147.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	5.74013205957468	6.03206147169273	6.01316062412569	5.71020197135568	5.6602609810767	5.76634530781176	-0.400934195819867	0.197425571667889	0.585396157342376
Merged-chr6-128754160-6	chr6	128753690	128754690	+	712.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31144.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	3.8792157038509	3.91338838715727	3.65234066550606	3.7492852708818	3.87523813577832	4.07181586178256	0.230781007022077	0.665417914517151	0.907852263250854
Merged-chr13-41605324-1	chr13	41604824	41605824	+	1000.0	f0_c57.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-892.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	8.29606961920647	8.24686388106188	8.24496139871551	8.29100497859381	8.55318145822693	8.31932144386864	0.187943962853383	0.373497017783175	0.757444305525285
Merged-chr7-44570065-2	chr7	44569565	44570565	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-2380.0	NM_008437	16541.0	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	2.11085295263805	2.04576098616174	2.27983279560438	2.11664143027532	2.01295110059887	2.09473763979871	-0.541938096652273	0.549937719570033	1
Merged-chr2-52956110-4	chr2	52955610	52956610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	98242.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.39016163684301	7.21011790735625	7.17015342639068	7.04504577207299	7.39047647947715	6.97527373414008	-0.15250696778599	0.555715156041723	0.863329848840921
Merged-chr9-75547367-4	chr9	75546871	75547871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12286.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	5.19503217356178	5.15906205462092	5.19963648716107	5.31952366980376	5.35383483353739	5.63754006271383	0.500628434979188	0.15152271243159	0.518952882025607
Merged-chr1-132312888-4	chr1	132312397	132313397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3228.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	5.13369773539579	5.35310638720118	5.12822027175609	4.86335298695912	4.61278929621173	4.94968546444987	-0.887186606646639	0.0216322213000352	0.17021375617691
Merged-chr1-93576382-2	chr1	93575882	93576882	+	746.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_145519, exon 10 of 27)	exon (NM_145519, exon 10 of 27)	59345.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.48529180352094	3.1397556290773	3.0989105300949	3.52654171258054	3.36317006031951	3.73034316772763	1.07952275400545	0.100369467845568	0.422499250290586
Merged-chr18-62118075-2	chr18	62117575	62118575	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	61906.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.31735171486255	3.25981542494819	3.28957379754601	3.46382252334646	3.1674360039893	3.36142541767743	0.173922034543784	0.777906878552566	0.945257566403653
Merged-chr9-49055568-4	chr9	49055077	49056077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012039)	promoter-TSS (NM_012039)	-4.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	6.0171531330543	6.18513152864489	5.61174076779425	5.50751442849519	5.62915115566275	5.52585609402781	-0.747618996166089	0.0259863142608234	0.191182072238249
Merged-chr4-143190828-2	chr4	143190328	143191328	+	744.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 2 of 7)	intron (NM_001256380, intron 2 of 7)	21881.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	2.88929463625879	2.8135112074829	3.05036661948982	3.10896417328632	2.84597347525942	2.94515149380781	0.253797148711529	0.715837325815661	0.92647595514209
Merged-chr12-13562838-3	chr12	13562344	13563344	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	64802.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	3.65209020471376	3.73506844536866	3.83433175614609	3.22114542569391	3.22157251416369	3.66114692504918	-1.35417642794998	0.0286443290016216	0.202845730005696
Merged-chr9-118661596-1	chr9	118661096	118662096	+	988.0	f1_balb.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-50096.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.19980577839205	7.43879216007841	7.24221311087584	7.40386791370839	7.43435086846869	7.08475239672803	0.0367095868104315	0.882678206893205	0.973231787904583
Merged-chr7-19328019-4	chr7	19327525	19328525	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17046.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	4.24100608604571	4.02040816684061	4.12512893818836	4.06926389564288	4.01607688928181	3.66631013947407	-0.568666729007709	0.278536276268236	0.675757252113228
Merged-chr19-43885269-4	chr19	43884778	43885778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-5510.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.41503130577903	5.12066640032871	5.12945478312913	5.21400006379812	4.92358756124569	4.59225713085686	-0.604750910750614	0.142135201311788	0.503269265578591
Merged-chr2-75978203-4	chr2	75977705	75978705	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081228)	promoter-TSS (NM_001081228)	-26.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	3.02160524323631	3.06319812075565	3.19125360683254	3.24390095146004	3.02679453364013	3.14827898882315	0.220094595158719	0.735177623163725	0.932617455907478
Merged-chr10-34128648-4	chr10	34128130	34129130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175449)	promoter-TSS (NM_175449)	-658.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	8.41715263000708	8.42116827179625	8.04317874932509	8.09789215689553	8.61457112994187	7.9914632838339	-0.0508940535507011	0.849368906194333	0.964652325106711
Merged-chr14-54464842-4	chr14	54464348	54465348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022993, intron 1 of 6)	intron (NM_022993, intron 1 of 6)	701.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	6.56434567853908	6.73214307085166	6.75115593343903	6.63362312990751	6.59511092278266	6.35736414013584	-0.22298666331571	0.403297024324357	0.778741733964102
Merged-chr9-118734879-2	chr9	118734379	118735379	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	23187.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.27967997231856	2.93492029858691	3.1000200253368	3.23002293406947	3.04895187353837	3.28745065101473	0.317622579622456	0.634453801699826	0.896350313439852
Merged-chr11-114671948-2	chr11	114671448	114672448	+	760.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 3 of 3)	intron (NM_001048058, intron 3 of 3)	3167.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	2.75263430324787	2.48558473923606	2.77306416034868	2.43291680619345	2.47456037092056	2.72689044751012	-0.728354011147736	0.365588526608933	1
Merged-chr1-176814765-4	chr1	176814266	176815266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151682, exon 1 of 17)	non-coding (NR_151682, exon 1 of 17)	106.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	7.77494483474111	7.8187851352742	7.47668344246398	7.57301373196102	7.53787466482612	7.43787220816923	-0.270603220763653	0.24644100871203	0.643523095964557
Merged-chr4-40702231-2	chr4	40701731	40702731	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	685.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	6.26118772202674	6.28250883672537	6.25233237687351	6.54643193897464	6.67802372007125	6.39257228472939	0.468142565341499	0.084359616361406	0.384392692525046
Merged-chr6-83454018-4	chr6	83453510	83454510	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	2382.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	5.27592777980018	5.43961603079051	5.7146740193213	5.48188387345501	5.39237676646805	5.5975419305215	0.0169490633926785	0.960895472320156	0.990386809359123
Merged-chr3-116662656-4	chr3	116662156	116663156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008246)	promoter-TSS (NM_008246)	21.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	7.47135007379521	7.43373322188188	7.12002769610447	7.23315105203654	7.15951850616063	6.95727796039201	-0.345451482876065	0.169357172332316	0.546111904953782
Merged-chr2-102401111-4	chr2	102400619	102401619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020267)	promoter-TSS (NM_020267)	-219.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	6.24873686801399	5.95255150625333	6.05719247770653	6.25761490479131	5.62162219094471	5.90772108203882	-0.242320265826756	0.470491940537329	0.819495618343931
Merged-chr17-56273427-3	chr17	56272899	56273899	+	914.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	3368.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	4.13405086118706	4.35158817059245	4.24272303816009	4.42413644146678	4.2742524268495	4.11935668046071	0.0966852538030004	0.83594549451682	0.961873866737315
Merged-chr13-37332854-4	chr13	37332364	37333364	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12481.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.96450701232517	5.83060815930268	6.12819903918155	5.99125747673815	5.99148752069727	6.24708356392396	0.178522751879942	0.553980241403402	0.862575362378324
Merged-chr15-64023892-4	chr15	64023395	64024395	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-25829.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.56119491980613	6.19612053933764	6.06944389818759	6.13437270023553	6.1338800111643	6.30028275198447	-0.192926880473424	0.523379654934101	0.848188188060079
Merged-chr12-55447274-4	chr12	55446738	55447738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45409.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.2669194655223	5.15511140408552	4.91529335394613	5.1698743958623	5.03209726834066	4.82170398990534	-0.225441694477483	0.557518580843369	0.864250916545731
Merged-chr4-130899541-4	chr4	130899049	130900049	+	971.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13785.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	5.07104424434196	5.11491195185763	4.92680056546657	5.38762623802998	5.34847703017757	5.45644668064265	0.703381765962926	0.0462180441396716	0.271973905005219
Merged-chr6-145115609-4	chr6	145115136	145116136	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281981)	promoter-TSS (NM_001281981)	0.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	4.79508801331073	4.71930029287882	4.70996050388235	5.6519793775919	5.64097550144959	5.39633921804576	1.71754565896991	2.51875555642157e-06	0.000122490129946654
Merged-chr9-21509165-2	chr9	21508665	21509665	+	878.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136912, exon 2 of 3)	non-coding (NR_136912, exon 2 of 3)	729.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	4.06979632761041	4.10637170866929	4.45966439237965	3.89023509796729	3.94342568493937	4.73649001203702	0.06819634747367	0.903887892102738	0.9779053923558
Merged-chr7-128128892-4	chr7	128128360	128129360	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-708.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	5.75758039642095	5.33559422470112	5.07509663455203	5.51934125276277	5.49269302347106	5.28549050294665	0.0150337819384215	0.968496325312062	0.992792165162521
Merged-chr4-155710855-3	chr4	155710360	155711360	+	762.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	6045.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	5.78122729761532	6.0948261985048	5.75251831286255	5.82218609140248	5.76789986384842	5.65038153305049	-0.252394587767593	0.426705332563076	0.793849313274879
Merged-chr2-23048234-1	chr2	23047734	23048734	+	641.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7993.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	3.04978432602822	2.91175580531143	3.0044615720423	3.01558428446618	3.05703711968598	3.1350790055418	0.3611118119074	0.585796944003389	0.875131338300747
Merged-chr19-5839654-5	chr19	5839033	5840033	+	800.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	5945.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	5.06951073299798	4.87899152593909	4.99323111370808	4.59821159935921	4.72547659534754	4.72528151796282	-0.671962641417642	0.0867201911698942	0.390131400817389
Merged-chr15-100687235-4	chr15	100686743	100687743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 1 of 7)	intron (NM_033612, intron 1 of 7)	677.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	3.46727746522452	3.26617992873249	3.23820953382989	3.78549988923954	3.46839249198131	3.6540491125739	1.1344838607319	0.0622388372083687	0.32412678789362
Merged-chr5-63812462-4	chr5	63811984	63812984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-11.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.60478719711633	5.32910161861786	4.99952863443085	5.48668187560068	5.39804980527588	5.24947686102279	0.0731993332360135	0.845193099269177	0.963760118842549
Merged-chr2-91137519-2	chr2	91137019	91138019	+	685.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177720, exon 35 of 35)	3' UTR (NM_001177720, exon 35 of 35)	19375.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	2.67120443926121	2.80120905970134	2.6722308815667	2.6667572869217	2.61251790189322	2.80670052297832	-0.138573447567734	0.852032291290256	1
Merged-chr9-111554788-4	chr9	111554280	111555280	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	115699.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	3.68039105613072	3.50716643550892	3.81680715957718	3.87916780183657	4.0729131595237	3.7840010223282	0.837492349197787	0.123028305273077	0.469254432800556
Merged-chr7-102441193-1	chr7	102440693	102441693	+	595.0	f1_balb.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	-502.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	4.10834952505951	4.07133887407152	4.42124445179271	4.24358941083754	3.87696835336942	3.9047324257042	-0.529653490543352	0.301714306167286	0.698409947909851
Merged-chr1-120293977-4	chr1	120293485	120294485	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22903.0	NM_001085409	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	3.51242904740248	3.28558913892982	3.60321458798699	3.60853983430289	3.50651065591714	3.51406558562566	0.276916594767365	0.635240689755426	0.896439353901449
Merged-chr2-32881163-1	chr2	32880663	32881663	+	544.0	f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5029.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	2.72803366638629	2.44918520989727	2.91385554574301	2.39389888442001	2.22966003037995	2.69777466141596	-1.51057984347854	0.0967583067047127	0.41464408281404
Merged-chr5-130174697-2	chr5	130174197	130175197	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	2878.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	2.31044590049806	2.37748519771312	2.52420899249972	2.49378282083772	2.43812103168827	2.19897981706673	-0.116079955447187	0.893650189730643	1
Merged-chr5-145201898-4	chr5	145201371	145202371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023322)	promoter-TSS (NM_023322)	11.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	8.09353746401236	8.39470249571916	8.09488558485981	8.02173363235039	8.31887841082514	8.00477930417507	-0.108020590437327	0.644819652822054	0.900313007333123
Merged-chr2-103796007-4	chr2	103795537	103796537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	1041.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	7.97540705555248	8.31951139204713	8.02055877309768	8.10319590177066	8.38772431451956	8.18799079856186	0.165471310068426	0.475807614351825	0.82218949187564
Merged-chr7-63911481-4	chr7	63911005	63912005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5352.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	8.17972486887827	7.89020370173734	8.02277874677924	7.96311314497188	8.21958460427516	7.92726988917349	0.0172819125201631	0.939994372986767	0.98676214644374
Merged-chr11-31868125-4	chr11	31867622	31868622	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2818.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.65469028599093	3.37790035307805	3.4542703539205	3.67504395005182	3.62900794154786	3.79090277208754	0.673796864259116	0.237807472708474	0.634356560418258
Merged-chr6-5211877-4	chr6	5211376	5212376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17930.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.07161061429095	4.07273580049673	4.07214706415704	3.96215605890872	3.79583305099458	4.0938480217301	-0.376334626674974	0.448841947592311	0.807454029128485
Merged-chr15-72874453-3	chr15	72873919	72874919	+	833.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-64095.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	3.32027978331097	3.66075266053077	3.73029001892606	3.27087274008348	3.53098787255132	3.37952083589261	-0.643698326708672	0.298250939026103	0.69500092474273
Merged-chr1-88237565-2	chr1	88237065	88238065	+	906.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 13 of 42)	exon (NM_001281466, exon 13 of 42)	10545.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.97893016162497	3.74800441907699	4.211253038987	3.80688577920622	3.71519010586329	4.61450291738194	0.334347578469853	0.578558095563561	0.872437129840066
Merged-chr16-57566212-2	chr16	57565712	57566712	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	16970.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.97216957609001	5.15088334521654	5.24188959962055	5.15584322580131	5.06546742015108	5.33512007172574	0.125424349816492	0.731801281322487	0.931535693390145
Merged-chr14-54735223-3	chr14	54734700	54735700	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 5 of 10)	intron (NM_016972, intron 5 of 10)	-23026.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	6.32795076252819	6.10170979687171	6.30052054103639	6.0866978499058	6.27202427379721	5.81368917955363	-0.267445727495759	0.381951837206841	0.763627090962007
Merged-chr3-9759291-4	chr3	9758799	9759799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	74380.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.66628162606529	4.23605217119931	4.23017811196134	4.26599849021318	4.47702633810341	4.39153277417793	-0.0457705740619368	0.922606784707467	0.982621045978137
Merged-chr9-108344349-6	chr9	108343882	108344882	+	920.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3449.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	3.85794538798296	3.50951454020769	3.73827835431509	3.918431499315	3.58580412931817	3.90801957097952	0.319011229350824	0.570636904660078	0.869253690275099
Merged-chr2-167689877-6	chr2	167689415	167690415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-844.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.26503194900257	8.10288233916825	7.99868463309122	7.88790202073906	7.67879574791377	7.80099693354276	-0.484941292549728	0.0287250245446821	0.203140561134957
Merged-chr11-4705140-2	chr11	4704640	4705640	+	792.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197979)	promoter-TSS (NM_197979)	484.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	4.59871579918699	4.41994332606881	4.67092677194485	5.26174047622471	5.33910334656601	5.30220731966189	1.64240534408546	1.93693532874647e-05	0.000709993457419985
Merged-chr10-96645518-2	chr10	96645018	96646018	+	624.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28517.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.29388222639174	3.23846636561691	3.40518470590428	3.43309197829705	3.22154020463886	3.30965883749121	0.0487448322740941	0.936353315584195	0.986037792257163
Merged-chr5-103778423-4	chr5	103777944	103778944	+	799.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	23871.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.24879012571391	3.21583891624826	3.12602644541737	3.1740423487358	2.99553283860496	3.31233802970844	-0.174336605265989	0.788091549481331	0.948857208063125
Merged-chr1-107514380-2	chr1	107513880	107514880	+	809.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2870.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	4.11002043841259	3.75517140360795	3.97135656357832	4.17764631201188	3.96853026396675	4.04080647217449	0.325869639137319	0.522540917181497	0.847654396943853
Merged-chr10-63236024-4	chr10	63235523	63236523	+	866.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7774.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	3.5611229524662	3.28639222208703	3.7716064977084	3.94838453998676	3.49764826445576	3.88921806734004	0.814343775888796	0.179279199779174	0.560785822158022
Merged-chr8-71404986-4	chr8	71404503	71405503	+	880.595825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026636)	TTS (NM_026636)	-1009.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	4.51456285291956	4.44540253598195	4.64083815692847	4.52790268177876	4.77359119024239	4.74485993241922	0.382795429873915	0.359700326417902	0.746001337716324
Merged-chr6-92988740-3	chr6	92988243	92989243	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48161.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	6.07599750404696	6.21760051327875	5.61257089514391	4.21474857554228	3.88413206985768	4.24350259866469	-4.76656942336098	2.75635221975074e-19	1.63821825357871e-16
Merged-chr8-68881435-4	chr8	68880907	68881907	+	693.458374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008509, intron 1 of 9)	CpG	852.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	5.78328707383713	5.63971796300757	5.81932321024918	6.11175857811705	6.40241703455594	5.95590224962002	0.763346327479603	0.0142837678690115	0.128475165586932
Merged-chr17-29841901-4	chr17	29841404	29842404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081160, intron 9 of 15)	intron (NM_001081160, intron 9 of 15)	45978.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	5.44012322277598	5.58145619002381	5.33019762265911	5.07254853145863	5.27999994143594	4.85040882277113	-0.728782380268646	0.0509443622603998	0.287544328786009
Merged-chr6-129616186-6	chr6	129615693	129616693	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083322, intron 5 of 7)	intron (NM_001083322, intron 5 of 7)	6490.0	NM_033078	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	5.56166494268638	5.53790414871149	5.66252030234571	5.51273963253226	5.64946071063207	5.84787512296208	0.16054333675222	0.619586186737502	0.889853069353322
Merged-chr17-43052624-3	chr17	43052123	43053123	+	988.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	36068.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	4.49979889927791	4.35303087122463	4.5104708516357	3.7036818914846	3.70690338200497	3.90486610514207	-2.06621532364965	5.04398857379619e-05	0.00159460562784359
Merged-chr5-120528495-4	chr5	120528001	120529001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 12 of 13)	PB1D7|SINE|Alu	17309.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	4.95576624594606	4.94650122171345	5.134484604346	5.16850340173109	5.11190319900829	4.79683508886013	0.0801561463248123	0.834029162799396	0.961189731000168
Merged-chr15-98468607-2	chr15	98468107	98469107	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	12295.0	NM_146280	258277.0	Mm.222977	NM_146280	ENSMUSG00000032987	Olfr281	MOR160-5	olfactory receptor 281	protein-coding	2.56293499822125	2.69380340396962	2.679771419456	2.50835461078549	2.47845049395868	2.49998902372148	-0.894038921883717	0.251822161555915	1
Merged-chr8-126581004-4	chr8	126580510	126581510	+	949.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	12426.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.67055575637559	3.73841142262525	3.50180491780372	3.64603764155502	3.65004383511182	3.73629087824254	0.0956742102504192	0.862232314267785	0.967996224966109
Merged-chr16-93818153-2	chr16	93817653	93818653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-13968.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	6.94544043310358	7.28198139573623	6.91938830893866	6.90247142903573	7.22289146149398	6.77927805903666	-0.110367682692801	0.690375562797682	0.917823389001164
Merged-chr8-126909584-1	chr8	126909084	126910084	+	633.0	f0_balb.idr	Intergenic	Intergenic	36337.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	4.58400311259136	4.46336243269541	4.10391595455222	4.04817592764573	4.20238110390233	3.73832169358197	-1.09092124699207	0.0453661844761243	0.268906068082548
Merged-chr10-59262752-2	chr10	59262252	59263252	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40830.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.34884672090195	6.15788319178761	6.55527054181889	6.70909738433503	6.7981229376528	6.71143729843243	0.624827715727602	0.0216840942977461	0.170408964707863
Merged-chr9-59749719-4	chr9	59749177	59750177	+	970.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	972.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	7.31811249532774	7.14561054316539	7.15440294839013	7.28862749568557	7.77083935155225	7.06694781832809	0.316215827883267	0.262562586389169	0.660543957868245
Merged-chr11-107448088-2	chr11	107447588	107448588	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4A|SINE|B4	22632.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.16480219309689	4.51626171672069	4.61831702051048	4.5369577250295	4.21865157912714	4.31019679587128	-0.208499134337295	0.657647937544744	0.904859102731141
Merged-chr17-78245732-6	chr17	78245244	78246244	+	826.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	45496.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.08021873980607	4.77584769082699	4.81724679161382	4.93886774440199	5.08235558296329	5.06573098067024	0.278006581057464	0.47031032631869	0.819448480449066
Merged-chr1-172195318-3	chr1	172194838	172195838	+	939.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151641, exon 14 of 14)	non-coding (NR_151641, exon 14 of 14)	11466.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	4.24721074685811	4.08820701869914	4.5852383106226	4.953244240298	4.75196596071649	5.28039850065377	1.66128943253109	0.000302286680078059	0.00701412997098025
Merged-chr12-88472161-4	chr12	88471641	88472641	+	950.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-94818.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	4.07181906519252	4.28672606767449	4.31656959773536	4.14386751859226	4.2620253391552	4.34054870733706	0.0624805363336239	0.893204505654853	0.975210713351106
Merged-chr4-44018319-2	chr4	44017819	44018819	+	687.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	RSINE1|SINE|B4	5669.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	3.37707506060168	3.40285536517989	3.67950262888733	3.6889233826335	3.330429181904	3.37399787354877	-0.0454313000496119	0.940464359696603	0.98684811092327
Merged-chr15-93337048-4	chr15	93336555	93337555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028315)	promoter-TSS (NR_028315)	-120.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	6.98971857948703	6.86517955434915	6.15453353573339	7.3845716203186	6.40637568861538	6.4385844643268	0.184648791914103	0.771262952625844	0.943589735529798
Merged-chr11-114883027-4	chr11	114882531	114883531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7010.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.70785357207465	6.47974293554775	6.07610211634852	6.04507909121305	6.40164422959584	6.09055206878665	-0.427605802744806	0.182344263676277	0.565146999365876
Merged-chr9-50907146-1	chr9	50906646	50907646	+	685.0	f0_balb.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	50222.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.96407607309331	3.68960432177985	3.7620092252999	3.48256683819778	3.46549192914893	3.92793138379297	-0.59749182268384	0.303004917520083	0.699723389681702
Merged-chr8-83773326-3	chr8	83772819	83773819	+	940.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-32008.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	5.12392015793535	4.9732034043421	5.23480249152238	4.49054933790273	4.45497293844861	4.98355400182735	-1.03475020142369	0.0142645881506612	0.128358154086754
Merged-chr2-3726834-6	chr2	3726303	3727303	+	996.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	13345.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	7.09157308700745	6.98785732106609	6.74975551443675	6.7129294401677	6.67011321930466	6.55389286245018	-0.478522611497176	0.0655313552164727	0.333907667452554
Merged-chr18-65707326-2	chr18	65706826	65707826	+	753.333313	f1_balb.idr|f1_c57bl6.idr	exon (NM_177028, exon 2 of 15)	exon (NM_177028, exon 2 of 15)	9058.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	3.21733880890604	3.10825912542778	3.17996160546805	2.98659626579546	3.1122924057572	3.01580626908965	-0.559239064225036	0.39388947846926	0.77200630622486
Merged-chr14-62001766-4	chr14	62001257	62002257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	291222.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	6.90328324343425	6.78546596944111	6.53418166913024	6.44474818456573	6.43134453947161	6.12134975858455	-0.650576703313203	0.0217445270375701	0.170754870304089
Merged-chr8-104099987-1	chr8	104099487	104100487	+	540.0	f1_balb.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-1638.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	2.82226092050854	3.04362124603905	3.11086660920444	2.81037539568066	2.76350858273678	3.12675333259048	-0.435690530939485	0.545414666305416	0.858101982622001
Merged-chr15-80711147-4	chr15	80710641	80711641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-172.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	7.73035565616053	7.9341682157317	7.60804563420317	7.73993649961555	7.99165747975931	7.39016650706431	-0.0397180871172149	0.879694668964718	0.972196331768953
Merged-chr10-93095380-4	chr10	93094883	93095883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13787.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	4.78717566802616	4.52665435841944	4.82774235989045	5.50936587685128	5.29046072158766	5.36870416708397	1.44460520995947	0.000144072183099576	0.00384083914980567
Merged-chr17-50509680-5	chr17	50509243	50510243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013880, exon 1 of 6)	exon (NM_013880, exon 1 of 6)	196.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	7.7075520281258	8.06363107691213	8.22565901698507	8.25379620238604	8.14658123849257	7.93395957540603	0.153050463386012	0.536324331874403	0.853931783517133
Merged-chr5-146293523-4	chr5	146293019	146294019	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 7 of 12)	intron (NM_153599, intron 7 of 12)	62269.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	6.14992301679524	6.17777470179495	5.91430010835554	5.89567068267941	5.9941679784981	5.52816907193885	-0.44645192518084	0.165005062110511	0.539648660014599
Merged-chr15-75696561-2	chr15	75696061	75697061	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7727.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	2.73672292293966	2.62974114734772	2.53603852832944	2.71240086917493	2.63749874034887	2.97941943621723	0.740074813237411	0.33771618646689	0.727601264688563
Merged-chr10-80076314-2	chr10	80075814	80076814	+	926.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	-875.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	6.16965362805668	5.98423378357894	6.38999422677968	6.55764114428826	6.50312392248874	6.81514757017617	0.725705534845046	0.0122851212326951	0.116124963263041
Merged-chr7-88282923-2	chr7	88282408	88283408	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	4823.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.01286315106311	5.70418763044588	5.81597797667031	6.29999896940318	6.34067861070645	5.82543690179185	0.57818604712499	0.0734615015683607	0.356127802046978
Merged-chr11-106317475-3	chr11	106316989	106317989	+	728.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2927.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	2.89168141734429	2.92619232090734	2.9272399659728	2.58807237368466	2.7850114994731	3.05620730525805	-0.471266608645841	0.529618681398287	0.851008230596217
Merged-chr1-144256627-3	chr1	144256172	144257172	+	552.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7568.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	2.59451736934468	2.71293310461514	2.78705393014368	2.61176750248197	2.73234987759771	2.73851875455198	-0.0101331575076076	0.989113381454075	1
Merged-chr11-88718473-4	chr11	88717953	88718953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201341)	promoter-TSS (NM_001201341)	-186.0	NM_001201341	76626.0	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	7.48365509621871	7.33104556488807	7.24212378231325	7.65208385117701	6.9250496197232	6.97106482276471	-0.186276080909266	0.532614732877927	0.851971173271146
Merged-chr3-116123520-2	chr3	116123020	116124020	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 4 of 8)	L1MA7|LINE|L1	6168.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.75285528715229	5.79355005189416	5.84484768553462	5.86191328240288	5.69500125654033	5.83271247368105	-0.00251083607198012	0.993416455633427	0.998651348330892
Merged-chr8-106410892-2	chr8	106410392	106411392	+	629.041626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4447.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	4.97778606198832	4.56206147992221	5.16323109524205	5.06758421394784	4.62639711127941	5.03477450014378	0.00280951662071448	0.994860108838803	0.998961028701257
Merged-chr16-23984378-4	chr16	23983890	23984890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3107.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	6.0205996145516	5.76879772941139	5.69504314569129	5.65294204643036	5.29638420758547	5.73094145808791	-0.513999163745128	0.130413224387686	0.482585767804437
Merged-chr17-28419809-3	chr17	28419285	28420285	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-54569.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	5.9079100714379	5.88148479584426	5.68012009802232	5.70565006889306	5.85201897631078	5.60097683957404	-0.182088866603087	0.562838416754316	0.865755360453189
Merged-chr11-100322763-4	chr11	100322256	100323256	+	799.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011508)	TTS (NM_011508)	2807.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	5.18821548211934	4.66080751707564	4.95123774831433	4.99171770204804	5.16399213383617	5.39760617882076	0.496659348619051	0.220959603375863	0.61561513090473
Merged-chr11-96937729-2	chr11	96937229	96938229	+	661.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134021)	TTS (NM_134021)	6290.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	2.96811308013499	2.82655770451493	2.7517224172004	2.85365385496148	2.65328723140297	3.23263786298414	0.370695681419087	0.627262811123136	0.893124180563218
Merged-chr4-126438513-4	chr4	126437997	126438997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8955.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	7.29532084887539	7.12272479986344	7.15678703913544	7.53356307440945	7.66042181428892	7.2269656163902	0.444485148124063	0.0738467635745574	0.357230909368698
Merged-chr12-99627993-4	chr12	99627488	99628488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045288)	promoter-TSS (NR_045288)	-14.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	7.78541078469433	8.03226373178076	7.55363918361822	7.82699556696599	7.80197298659228	7.61965110352974	-0.0824411854751461	0.735065530409523	0.932617455907478
Merged-chr9-113782418-4	chr9	113781882	113782882	+	677.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-10948.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.94958604048947	5.93874784948425	5.39880847210301	5.47908030551823	5.69612436396434	5.61352162240505	-0.366106766471138	0.291929858776267	0.689235268138963
Merged-chr5-90931252-4	chr5	90930750	90931750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	54.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	6.79804715569836	6.2194310973078	5.85131834345226	5.56635949260869	5.1230045589894	4.9767906305885	-1.99178788494257	1.39303270446637e-06	7.25807547108564e-05
Merged-chr10-13965708-4	chr10	13965259	13966259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010437)	promoter-TSS (NM_010437)	-316.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.86545416015031	8.72652210334604	8.50634271565401	8.65717009773032	8.94647593495551	8.4773095310896	0.00407962995515096	0.986206637189991	0.997033990984076
Merged-chr6-13597340-2	chr6	13596862	13597862	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	10736.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	4.793074428594	4.66220252079028	4.58879080308419	4.49578727342919	4.64506832841181	4.73507057518417	-0.149515819504005	0.717158684646406	0.926979087819795
Merged-chr8-84567200-3	chr8	84566682	84567682	+	960.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 20 of 47)	intron (NM_001252060, intron 20 of 47)	95670.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	6.11455986133922	6.03219610358992	5.87405422212167	4.1984298281609	3.98143878676991	4.3410919910004	-4.54492211555325	1.85811765601481e-20	1.31025638916678e-17
Merged-chr9-15294596-1	chr9	15294096	15295096	+	580.0	f0_balb.idr	intron (NM_001359258, intron 3 of 7)	intron (NM_001359258, intron 3 of 7)	7011.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	3.30502017294829	3.24585981290486	3.06082067350775	3.10062759651001	3.28847375303397	3.52688585581764	0.402614785788036	0.539339042326514	0.855849474290651
Merged-chr4-105226449-4	chr4	105225947	105226947	+	865.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 5 of 5)	intron (NM_080555, intron 5 of 5)	69100.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.93725641479194	6.19679032195149	5.95686298868414	6.32262018101344	6.64104275302284	6.11362959672075	0.585481889380361	0.0593407106416723	0.315462678959384
Merged-chr9-70834807-4	chr9	70834318	70835318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99990.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	7.06164817369311	6.86625366150087	7.12780761887516	7.21111736220653	7.09316566078425	7.11080773500377	0.183558743938109	0.450821006291561	0.808622732738337
Merged-chr5-30232521-4	chr5	30232020	30233020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137634)	promoter-TSS (NR_137634)	-61.0	NM_027652	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	5.26301694040318	5.37664265324428	5.40922269310636	5.35255659292576	5.38585164304472	5.00122154758706	-0.153403410102509	0.668841815401673	0.909385924601941
Merged-chr11-94388890-3	chr11	94388375	94389375	+	704.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4101.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.49343436869309	6.11757039413554	6.38249282323322	6.3042755280807	6.35645304622948	6.13716114123361	-0.103340282869625	0.722278959127675	0.92872455507539
Merged-chr1-34005375-3	chr1	34004897	34005897	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6428.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.80242419456624	4.90589522371383	4.97418059435031	4.90541608836579	4.94070761329573	4.6093904758618	-0.119999022764932	0.762776466691942	0.941663714620562
Merged-chr7-71785176-3	chr7	71784667	71785667	+	919.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124528.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	2.83019371611599	2.89637119745032	3.11294523580582	2.55797105009042	2.83196863165962	2.71512806075317	-1.21133927703156	0.117576946928384	0.457794860113807
Merged-chr19-10830851-2	chr19	10830351	10831351	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037801)	promoter-TSS (NM_001037801)	-793.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	3.3635116114263	3.21969592662963	3.5439404571441	2.97592075639784	3.15190022460739	3.51356873036478	-0.602328516998515	0.371610388949043	0.755699519604858
Merged-chr11-72221440-4	chr11	72220895	72221895	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5803.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	2.86234960925234	2.99342952877604	3.11236937577867	3.0771857895591	2.77029886746515	2.88825592918986	-0.347285049022264	0.622980684728792	0.891251075175817
Merged-chr19-32293248-2	chr19	32292748	32293748	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56068.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.59524990583866	5.96413358883253	5.51239932610286	5.20937900855234	5.16006394840114	5.19357400988711	-1.02286870633241	0.00359445516671435	0.0481131374345773
Merged-chr13-65240089-2	chr13	65239589	65240589	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-34373.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	3.07813560341418	3.00094705673132	3.19525824606768	3.26381846793063	3.34346643392232	3.26713510483788	0.878442663294769	0.166404689411038	0.541650095705264
Merged-chr8-125278461-1	chr8	125277961	125278961	+	812.333313	f0_balb.idr	Intergenic	Intergenic	214372.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.20768866062383	3.24965018124212	3.54721241747655	2.89250661991571	2.7941239947472	3.02489709848514	-2.07033493464582	0.00393518005726831	0.0512985214170737
Merged-chr7-35157690-3	chr7	35157203	35158203	+	975.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28682.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	3.10140795862001	2.8150349082315	2.84056890252729	3.17728924598889	2.92914086304782	3.04031877095796	0.56393407787953	0.424471464726533	0.792697196836987
Merged-chr1-131277016-4	chr1	131276522	131277522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019777, intron 2 of 21)	intron (NM_019777, intron 2 of 21)	2541.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.97742349479582	5.59583354563398	6.31277624947309	6.46681142701041	6.16847394010849	6.79725105358442	0.85074800229518	0.0154726050552	0.135591840066676
Merged-chr9-104678260-1	chr9	104677760	104678760	+	780.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	108777.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.24232541940474	3.43747056629291	3.46503100724286	2.8399717207218	2.61129352744707	3.15739808077496	-2.47576126407017	0.00285789469268009	0.0405593896620374
Merged-chr16-65201480-4	chr16	65200974	65201974	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95690.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	3.32810275468344	3.53027250170464	3.70542123640685	3.33516902145215	3.38210074862098	3.4133982369063	-0.553749345707051	0.35579874707235	0.742593358585589
Merged-chr14-27190347-3	chr14	27189849	27190849	+	923.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	46356.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.60161083040101	3.76308642121719	3.74848561600619	3.55245472814431	3.6335535230002	3.49725851284673	-0.477754532539289	0.390828851527108	0.769975715333663
Merged-chr16-91461400-4	chr16	91460918	91461918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-3686.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	8.08308115550296	8.07047300074308	7.59664101588458	7.83386624577673	8.07666173433188	7.58241971244332	-0.12602843363971	0.634252653592077	0.896306748317281
Merged-chr15-57793182-4	chr15	57792622	57793622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	98455.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	6.02240394366407	5.651347874217	6.20038735530864	6.22248378087675	6.23979652773179	6.24053051466205	0.456875676475065	0.14150470590109	0.502183459290427
Merged-chr19-10949785-4	chr19	10949275	10950275	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-509.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	6.54440605448246	6.32253714492943	6.68423416386214	6.39959171810572	6.48354211048558	6.63313982494344	-0.0212124661838183	0.938927854277434	0.986555402744209
Merged-chr9-21320694-4	chr9	21320198	21321198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	-21.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	6.94288371356142	7.14974457984534	7.12424318901385	7.10910207934554	7.11201864713518	6.77300778345363	-0.0869197075136602	0.734073429307784	0.932325051544019
Merged-chr16-14112959-4	chr16	14112461	14113461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46313.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	6.30566970094473	6.35790892239157	6.52662038276037	6.12772945737075	6.29362382950236	6.2972040941694	-0.251498875081874	0.36475726085885	0.750028369485675
Merged-chr15-67174727-4	chr15	67174250	67175250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2132.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.62911325340231	6.99038447727851	6.76284255823306	6.58473101443198	6.85574317264516	6.90897333092667	-0.0258355794510515	0.924434823905358	0.982960139621551
Merged-chr18-44843897-2	chr18	44843397	44844397	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 7 of 29)	intron (NM_001163013, intron 7 of 29)	15232.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	3.19556423816003	3.3083858423595	3.22803341917635	3.27093314380545	3.36609305675401	3.4650082593571	0.485210553381365	0.426876614792149	0.793904265858508
Merged-chr6-129471002-3	chr6	129470578	129471578	+	849.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1701.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	6.92908009490417	7.03615701388382	7.00764182454658	7.13558736833199	7.54824044207696	7.15683516881449	0.470873347232217	0.0673316513500278	0.339280085116763
Merged-chr4-101655496-1	chr4	101654996	101655996	+	1000.0	f1_balb.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	7713.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	6.89455939272836	7.0033747824839	7.15586727800291	6.97725822120776	7.50592842005837	7.20151588260282	0.356614314220689	0.18504330771183	0.569091204638575
Merged-chr16-20538110-4	chr16	20537608	20538608	+	965.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	2628.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	5.3992727211842	5.75075611103024	5.87630675333151	5.5739593634483	5.8112980145863	6.16761828777589	0.327330110847258	0.356265339613463	0.743149157465617
Merged-chr2-14208762-3	chr2	14208273	14209273	+	742.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	MIR|SINE|MIR	-20641.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	4.09428869326699	4.032993845206	4.09491914235161	3.75344159136741	3.87830432495411	4.02339187027911	-0.570256547644542	0.255007458161369	0.652024436103169
Merged-chr7-31110977-1	chr7	31110477	31111477	+	1000.0	f0_c57.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	20.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	7.73921206343051	7.43477627287053	6.57578857845712	7.72957945101545	7.65827214107055	6.98678713826396	0.234131365242644	0.698177532096576	0.920241982142786
Merged-chr2-152738835-3	chr2	152738334	152739334	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2583.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	5.86104853753335	5.7731607581097	5.65271987576972	5.73878941382767	5.34183026431517	5.60440794188481	-0.379397395086107	0.251850113688493	0.649428218365646
Merged-chr10-81570512-2	chr10	81570012	81571012	+	932.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4775.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	2.58769425576734	2.38464614236388	2.7196375842533	2.52691348352845	2.31401939793569	2.34872796324267	-1.03204105110095	0.221187743495742	1
Merged-chr4-128787560-4	chr4	128787055	128788055	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 4 of 8)	L1ME4c|LINE|L1	18557.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	4.15194576285298	4.11934992130266	3.95856507045599	4.5966505643166	4.41313265922262	4.50145878297369	1.11513908907404	0.0162896377865405	0.140604583085317
Merged-chr7-35740306-1	chr7	35739806	35740806	+	913.0	f1_balb.idr	intron (NM_178704, intron 3 of 18)	RMER12C|LTR|ERVK	14148.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	2.83397525426753	2.83505381547089	2.91459287401332	2.52683223200375	2.69793299701794	2.48073176335249	-1.56277434014006	0.0556255004544518	1
Merged-chr1-94058503-4	chr1	94057999	94058999	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5946.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	2.74502368429024	2.7006509585633	2.840447173304	2.55498224672583	2.6764440580697	3.02594000433338	0.0056118254890095	0.99414326450041	0.998918571480046
Merged-chr11-95830462-2	chr11	95829962	95830962	+	976.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163464, exon 8 of 8)	3' UTR (NM_001163464, exon 8 of 8)	5962.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	3.92763214378323	3.9419957305788	4.66140714010185	4.23903541940807	4.25853952716653	4.69104910175286	0.500709409317597	0.358016283260615	0.744545257134442
Merged-chr11-54801967-4	chr11	54801468	54802468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14265.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.48321161272432	6.05598687413047	6.23715320515057	6.36481790326157	6.34077368112367	6.14806914079593	0.0347391754778132	0.906593582427795	0.97878370342479
Merged-chr1-152535964-2	chr1	152535464	152536464	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	89253.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.82551032469779	6.59501237250783	6.51001217176149	6.99929747699385	6.92887318381076	6.58795904430904	0.316432177061148	0.251380696642088	0.648833216107931
Merged-chr7-126823020-2	chr7	126822520	126823520	+	675.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029978)	promoter-TSS (NM_029978)	-283.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	2.87923183442371	2.93511231992495	3.61373525666173	3.01522870975803	2.78434306813406	2.95018520401002	-1.15527620716694	0.128698227674217	0.479799601167289
Merged-chr10-96015943-4	chr10	96015429	96016429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001932, intron 13 of 28)	intron (NM_001001932, intron 13 of 28)	75266.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.45804570406996	4.97002974823627	4.69716754133053	4.95259200145601	4.87850930670053	4.43521345377115	-0.664735939660813	0.153269787264535	0.522110330345248
Merged-chr1-191881259-3	chr1	191880798	191881798	+	762.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25483.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	3.14731233396556	2.97924796822292	3.28355311899012	3.01018758309499	2.62029777624848	2.76210275367198	-1.6343386161	0.0331784433101142	0.222176748548588
Merged-chr8-122551491-6	chr8	122551019	122552019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357349)	promoter-TSS (NM_001357349)	-190.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	7.45855136877122	7.51877484112088	7.45813464940873	7.52931014640469	7.30531593297252	7.29699823789116	-0.142814216254613	0.535137185186174	0.853413349144649
Merged-chr6-115374813-1	chr6	115374313	115375313	+	543.0	f1_balb.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	12464.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.1630160346798	6.47395344594921	6.09460161006522	6.17749686680085	6.43134946900359	6.08685977718557	-0.0203661149830548	0.946470390986595	0.988002063841177
Merged-chr14-122049256-3	chr14	122048740	122049740	+	861.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14566.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.35449776519663	2.36191568763536	2.35401539026342	2.53712338083767	2.66377721237367	2.68647333624385	1.71877694726032	0.036977025374878	1
Merged-chr1-75521872-4	chr1	75521383	75522383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027886, intron 2 of 24)	CpG-327	354.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	8.31700465396529	8.79727406194744	7.77702271558539	8.39809608075476	8.46869901191258	7.93046873727842	-0.113754595615925	0.717696478877001	0.927155544393689
Merged-chr19-4811171-4	chr19	4810686	4811686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019869, exon 1 of 3)	exon (NM_019869, exon 1 of 3)	448.0	NM_001290127	102902673.0	Mm.426069	NM_001290127	ENSMUSG00000096370	Gm21992	Rbm14-rbm4	predicted gene 21992	protein-coding	8.12724760742844	8.41081843165226	8.13181818044676	8.05783344849308	8.31786098242086	8.07525648826903	-0.102950660238084	0.650671307674261	0.90265185343381
Merged-chr1-172566451-3	chr1	172565946	172566946	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	6540.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	3.26496485481094	3.39801555719273	3.36205246965904	4.01284117391429	4.17098806771648	4.2537126323109	2.8578195172276	2.4306741504201e-06	0.000118681252810697
Merged-chr9-110476754-5	chr9	110476270	110477270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010628)	promoter-TSS (NM_010628)	-76.0	NM_177771	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	7.33734743185505	7.43440356022236	7.03405341641663	6.88172121362051	7.24355261901849	6.8754734192813	-0.397963258723641	0.139634667851444	0.499301307664228
Merged-chr4-56940780-2	chr4	56940280	56941280	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175518, intron 1 of 17)	MTD|LTR|ERVL-MaLR	6649.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	2.3331928874565	2.33679788675944	2.36077470380657	2.43018310752854	2.43793001959779	2.62443648761938	0.971082023007835	0.233444837414004	1
Merged-chr2-5035909-4	chr2	5035413	5036413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	ID_B1|SINE|B4	-23122.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	7.17754826272357	6.9823557518928	7.17562054364545	7.7699830747298	8.01489327112104	7.42031042915199	0.961614027931043	0.000232548101519759	0.00565929668337309
Merged-chr16-8831667-2	chr16	8831167	8832167	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	1567.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	5.92564864408818	5.80930759305521	5.75266698334774	5.94239801865578	5.45977102758602	5.98287228168722	-0.0532747642905098	0.873945771772059	0.970496193482043
Merged-chr16-38710794-2	chr16	38710294	38711294	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	2241.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.44655969912031	5.17279866834556	5.26458922738966	5.61353835716222	5.65902520059101	5.42482037017068	0.53140008185692	0.119626033247061	0.462281393944893
Merged-chr11-51967611-4	chr11	51967109	51968109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029976)	promoter-TSS (NM_029976)	-22.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	5.63490549438004	5.95078112546515	5.60892733569103	5.69109554110971	5.82375506002211	5.72664438928962	0.00343012736044647	0.991503064411492	0.99826611332009
Merged-chr17-48325911-4	chr17	48325430	48326430	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	9768.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	5.95344509112295	5.52977365623243	5.91215059654793	5.77593550104822	5.40876960654574	5.88075156137054	-0.209282106727218	0.548359891376257	0.85965540331284
Merged-chr14-70817445-2	chr14	70816942	70817942	+	707.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-35491.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	4.17776959267662	4.09761336967698	4.27771008184579	4.23405985694199	4.12973900144987	4.16480510099095	-0.0149643508116206	0.974365466423102	0.994276686350905
Merged-chr11-114667819-4	chr11	114667314	114668314	+	810.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-729.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	3.90139642807854	3.8306052546092	4.22582136498017	3.94417670252985	4.02465943004952	4.66849114256244	0.713502076030064	0.195122424011875	0.582787221560878
Merged-chr8-69936634-2	chr8	69936134	69937134	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	-34076.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	3.5026380429773	3.52006868657749	3.40326750670018	3.14565349353269	3.06450742196604	3.24715673261028	-1.37938727832997	0.0281078836697286	0.200480094667476
Merged-chr18-5102096-2	chr18	5101596	5102596	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	55507.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	4.63532948755721	4.52024254470709	4.90742095064824	4.32565689784115	3.93924335923264	4.23024159613614	-1.35786972439618	0.00421778951817057	0.0541261305101691
Merged-chr17-65907184-4	chr17	65906673	65907673	+	947.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21418.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	4.04258731734922	4.44581453683087	4.42511799846061	4.13368884000685	4.23619092042033	4.36668577419555	-0.187356773742613	0.695222491531686	0.919230570201314
Merged-chr1-88232011-2	chr1	88231511	88232511	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	intron (NM_001281466, intron 5 of 41)	4991.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.64108651175139	3.46210377015915	3.79854936556976	3.63207239052194	3.4174492274485	4.21359327426894	0.504689607234424	0.41731620742678	0.787951515900482
Merged-chr10-23797003-3	chr10	23796531	23797531	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358812)	promoter-TSS (NM_001358812)	45.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	2.48574927800139	2.51188386008117	2.63671031388447	2.511904453147	2.37607300938403	2.5868303432805	-0.321402193197175	0.684266808353118	1
Merged-chr7-127347049-2	chr7	127346549	127347549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTAAT)n|Simple_repeat|Simple_repeat	-1735.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	3.18673605309991	2.91148528993504	2.94191314958422	2.9711528730752	3.07770928410489	3.07568634521981	0.0906465978204756	0.894068496835552	0.975337673545585
Merged-chr11-80382969-1	chr11	80382469	80383469	+	575.0	f0_balb.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-310.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	8.00673498653615	8.01578984691983	7.71987369985357	7.96828630487007	8.19856686814933	8.02909779108	0.205148170470049	0.365971810787294	0.751042826221802
Merged-chr9-111033984-4	chr9	111033494	111034494	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 13 of 16)	RSINE1|SINE|B4	14702.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	5.44539149126136	5.39097094593917	5.75608326020008	5.10766645435953	5.47320665776202	5.39230885269239	-0.372879523908691	0.29859933311132	0.695358464905173
Merged-chr11-106657624-2	chr11	106657124	106658124	+	959.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	B4A|SINE|B4	-44694.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.66524923840967	5.39261629963612	5.58826740360357	5.29194471605267	4.94625037056508	5.39835106349967	-0.667851031775735	0.0658212374183012	0.334823502949436
Merged-chr11-80183860-4	chr11	80183371	80184371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-1.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.36176375881106	7.36466349824486	7.62106642256138	7.24184977201524	7.44057374928813	7.29478939448359	-0.171262027391295	0.472586527960781	0.820550293768681
Merged-chr3-27192020-4	chr3	27191519	27192519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9015.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.78722262215798	9.06890002055174	8.44369313426549	8.48945657883194	8.88429736139834	8.24713862314431	-0.305896418284046	0.266046728520342	0.663824402864358
Merged-chr7-127967307-4	chr7	127966846	127967846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347649)	promoter-TSS (NM_001347649)	-133.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	8.86780354736562	8.70176627343017	8.39716883198929	8.50207570842068	8.53968327542071	8.54756300876501	-0.202170343585732	0.363799812363939	0.74933829766087
Merged-chr12-3771275-4	chr12	3770764	3771764	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-35716.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.74508885186887	4.22784966223538	4.67179670036404	4.73268668906243	4.70577331331639	4.48909661430359	0.208754061724308	0.644102484747618	0.900067122451665
Merged-chr2-25053490-2	chr2	25052990	25053990	+	554.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	-889.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	3.45630334019063	3.45433740137026	3.95877649040566	3.56379365887349	3.21105888222131	3.93911657670653	-0.12905399256597	0.844420559697942	0.96373428957366
Merged-chr11-118459314-4	chr11	118458843	118459843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER73|LTR|ERVL	-4348.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	7.98305912691458	7.23629149916173	7.57642200594242	7.91617236646432	7.75613732463259	7.69869046198336	0.223292093019495	0.422325893183352	0.791176443623927
Merged-chr15-59525948-4	chr15	59525440	59526440	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-122714.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.30116549142828	5.17585464848789	5.00664758265649	5.0229185179247	4.90592477163224	4.75930758018726	-0.57083081043894	0.132908787774682	0.487807084520124
Merged-chr2-90515119-4	chr2	90514603	90515603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-35929.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.07365827778722	5.84092320319086	6.2037169723734	6.23776043249969	6.24255912231103	6.0262746202852	0.239146944320919	0.423166823996571	0.791863924096789
Merged-chr19-34612830-3	chr19	34612308	34613308	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005858, exon 2 of 2)	3' UTR (NM_001005858, exon 2 of 2)	4851.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	4.01753793127657	4.16166576049934	4.49836697014149	4.46834252400788	4.4049628036305	4.40066821018463	0.519475590096076	0.267797267119109	0.664975925109882
Merged-chr4-9122821-4	chr4	9122313	9123313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-146480.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.50961066583845	4.5700479662155	4.73627358392573	4.87384798449999	4.33391670558036	4.80154283011547	0.189963433725437	0.670625265408678	0.910053903576255
Merged-chr5-33358665-4	chr5	33358146	33359146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 2 of 8)	intron (NM_021500, intron 2 of 8)	-20050.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	5.16840024008032	5.04672971161495	5.50465081092532	5.31523301744075	5.23239425791142	5.07494386114868	-0.051403165309508	0.890203217495959	0.974472301756451
Merged-chr8-104343341-2	chr8	104342841	104343841	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	2747.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	3.7621413154057	3.71433303406339	4.22742345583788	3.50435137977744	3.40388620822814	3.91221273489322	-0.975983141853931	0.105439637722604	0.433383786584786
Merged-chr8-119826188-4	chr8	119825686	119826686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	14393.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.3021160500057	7.34803923613866	7.52947584529237	7.37262629796922	7.49925720899606	7.2450139621964	-0.0125280090382325	0.957824943627282	0.990000537228272
Merged-chr1-60173311-4	chr1	60172811	60173811	+	947.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	3.56772413545525	3.58492263057022	3.62363061204046	3.16083153206603	3.09239383686121	3.37548601647154	-1.55957331636249	0.0124521533096649	0.117300891270304
Merged-chr13-45105407-4	chr13	45104975	45105975	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103379.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.98610293182387	4.00149887676337	3.79787791345057	4.21390076731136	4.13834812275369	4.21780637298774	0.722432402896411	0.141046032731876	0.501781106141944
Merged-chr15-84234811-2	chr15	84234311	84235311	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	B4A|SINE|B4	2768.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	6.31479429527955	6.51357009224337	6.59247407094052	6.29865027509622	6.56935387742281	6.56866276508402	0.0188188525694709	0.945975375975114	0.98796006280508
Merged-chr15-84988648-3	chr15	84988146	84989146	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-675.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.92559447281114	6.95349570106464	6.53342685326262	6.98931725863213	7.07081819587728	6.32895574898934	0.0374365974477889	0.906162520226259	0.978584957598787
Merged-chr1-177795527-4	chr1	177795022	177796022	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007422, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	987.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	5.33213021821928	5.8075595361767	5.32308706225221	5.819080095561	5.54146823265271	5.42036143107518	0.166575975949987	0.649073294577366	0.902098707664085
Merged-chr12-8942048-6	chr12	8941550	8942550	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	5.09874412035462	5.28015806349572	5.96461054880965	5.60162837586547	5.65548719618315	5.89658220609586	0.424361144280787	0.285400991666148	0.682917350182106
Merged-chr4-66849286-2	chr4	66848786	66849786	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	21735.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.36423540942041	3.50656364847824	3.33735510124854	3.18188303560833	3.23289562532004	3.17458396692703	-0.849067979997019	0.171248402833	0.549251709629892
Merged-chr8-25518735-4	chr8	25518235	25519235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010206)	promoter-TSS (NM_010206)	-24.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	3.42791295023177	3.39776797907442	3.26120802777885	3.70672175471952	3.46409617889851	3.76483818908473	1.02633565241947	0.0861346775906589	0.388698278122135
Merged-chr9-37253309-3	chr9	37252859	37253859	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	(A)n|Simple_repeat|Simple_repeat	2379.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	5.2483498864601	5.64964248213616	4.94822648150171	4.82653503296873	4.58329167595071	4.68732198505774	-1.34798836378281	0.00125534224674816	0.0215059744013632
Merged-chr4-128617770-5	chr4	128617185	128618185	+	839.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	934.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	6.13685022865999	6.24236592055102	6.17225588383397	6.34682009375259	6.61491321417309	6.37458495128401	0.45134546085238	0.105571986763116	0.433670708658438
Merged-chr3-69699981-4	chr3	69699458	69700458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22097.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	6.34055971158947	6.02585044109574	6.19212817299716	6.30218539564778	6.23618890996206	6.47968874887459	0.238939998159651	0.40768889435226	0.781797550673247
Merged-chr7-44891733-4	chr7	44891187	44892187	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	737.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	5.86387478889675	5.66614259223765	5.38587399908282	5.392986946383	5.13938703321065	5.06750726093832	-0.875521815079779	0.0153654215108893	0.134961867494549
Merged-chr5-146768500-2	chr5	146768000	146769000	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	26456.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.41236104434662	5.50272713111532	5.57740135805177	6.04539476820748	6.01627179317702	6.22132757881555	1.07460550059053	0.000487685658861684	0.0103019416863577
Merged-chr19-7484206-3	chr19	7483696	7484696	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	-905.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	5.23733416023938	5.41202228487032	5.67944489943299	5.68257438272133	5.98795893487397	5.66229903762643	0.65483975704713	0.0564677923853161	0.306355354293368
Merged-chr2-145804118-4	chr2	145803632	145804632	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	18016.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.40358726887079	4.38239160947117	4.0952706654892	4.0491573272292	4.18961461718781	4.39332766856678	-0.26276891989829	0.582240566883692	0.873654816299381
Merged-chr11-58010406-4	chr11	58009944	58010944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	1380.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	7.49655638243996	7.8138363554361	7.58548160467653	8.0112549474749	8.14826428867964	7.80653279752924	0.515765761992482	0.0300156024900855	0.209034001673505
Merged-chr5-140419900-2	chr5	140419400	140420400	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133916, intron 1 of 18)	intron (NM_133916, intron 1 of 18)	595.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	6.16769625994357	6.07209183187936	6.26636665548301	6.22288265274466	6.03593433253531	6.18555292556752	-0.0335481978656261	0.906325730161761	0.978646898549161
Merged-chr15-78590204-2	chr15	78589704	78590704	+	842.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6843.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.58104944940708	5.42735641748673	5.48688449082653	5.96298138646645	5.96998441748312	5.60990738780637	0.675203871027328	0.0375204407086834	0.23941724160185
Merged-chr2-102826975-1	chr2	102826475	102827475	+	576.0	f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	intron (NM_001039150, intron 11 of 13)	74690.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.35915119685363	3.20955050438017	3.49316060356791	3.5709417984577	3.41388209590779	3.9485971904745	1.09725960745194	0.0757166077421061	0.36229025284676
Merged-chr10-115332611-3	chr10	115332116	115333116	+	981.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	-17025.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	3.48484076179322	3.3470030881251	3.38500077243491	3.2599594863154	3.10393409655591	3.16715214962859	-0.951486612631723	0.127034155271803	0.476314670819392
Merged-chr1-136127092-4	chr1	136126605	136127605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_046167)	TTS (NR_046167)	4078.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	5.65392733964937	5.74591432121492	5.205721289074	6.10291729238208	6.11642730381494	5.54806948929805	0.698823347652191	0.058451235472078	0.312562121205632
Merged-chr10-127290648-4	chr10	127290145	127291145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007837)	promoter-TSS (NM_007837)	-148.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	8.76816352556263	8.79287827184471	8.42631697724471	8.66268318023375	8.88548533924449	8.26187376739728	-0.0563050161412774	0.824737796787578	0.958596193929081
Merged-chr11-3964467-1	chr11	3963967	3964967	+	592.0	f0_c57.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	492.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	7.50664994800967	7.66164054277332	7.5590767628594	7.56692292507629	7.76607388785308	7.44232944949492	0.0410059697380779	0.860274607382258	0.967451406015177
Merged-chr3-55119306-2	chr3	55118806	55119806	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 2 of 8)	intron (NM_001144987, intron 2 of 8)	7140.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	2.81208032957271	2.96569231195131	2.94283386106547	2.98145786007776	2.82865393483004	2.76727901449062	-0.217954618509567	0.758059817658214	0.940048180528243
Merged-chr8-125733612-4	chr8	125733113	125734113	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	-590.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	6.89261965024518	6.76878500008041	7.0698347243798	6.73593623623651	7.01919481261099	6.82819677403367	-0.0566153945592729	0.828099695431851	0.959633697141491
Merged-chr13-30744664-3	chr13	30744178	30745178	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4555.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.07061212464684	2.93268996599542	2.80542303347969	2.98996959981869	2.73574197462017	3.12129687683833	0.0450056196234805	0.95051654983446	0.988444308820256
Merged-chr13-58481408-4	chr13	58480860	58481860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78017.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.74052636773167	5.66472329668118	5.40674638431128	5.33080239088015	5.26439392647665	5.34457314603692	-0.598999754885787	0.0754062538312751	0.36159125428477
Merged-chr12-25094682-9	chr12	25094176	25095176	+	920.3312380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010496, intron 2 of 2)	intron (NM_010496, intron 2 of 2)	1416.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	7.85932624869638	8.63648063424334	7.41668067042134	7.64771484646431	7.96966862892717	7.54022758910106	-0.493830128972969	0.151031771635303	0.51831442935867
Merged-chr12-91793568-2	chr12	91793068	91794068	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7132.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	1.99072887771314	2.04720253831631	2.12848775532427	2.29901597771812	2.13925417376936	2.33593674472277	1.5385089467779	0.0935451485317893	1
Merged-chr11-116617849-4	chr11	116617331	116618331	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6421.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.49891924614059	6.73139406038324	6.4730485981032	6.76513991205991	6.64501664491185	6.782296706218	0.235256204481041	0.372052290504506	0.755997445123458
Merged-chr2-132151803-4	chr2	132151295	132152295	+	961.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6475.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	2.92108937737014	2.7150988607132	2.70021963686359	2.95689748199068	2.91431715512894	3.19445405363626	1.14943646888639	0.116209940731314	0.455137876890266
Merged-chr4-101649362-2	chr4	101648862	101649862	+	827.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	1579.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.76721791087777	5.72429884362126	6.12334964799479	5.89109282268948	6.16623904787547	6.14245438806808	0.352742247395202	0.262208417253674	0.660046527994061
Merged-chr15-100086798-2	chr15	100086298	100087298	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	B3A|SINE|B2	48134.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.05099901283901	3.88681786176403	3.85274851236332	3.97561024236639	4.1927041519087	3.92349189729081	0.320737335001148	0.527461223012086	0.849959310385428
Merged-chr7-24134157-4	chr7	24133647	24134647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019941, intron 1 of 4)	CpG	1775.0	NR_153441	56525.0	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	4.80596131701306	4.80422034829599	4.95960101351805	4.76645127908275	4.59005642575594	5.05658992228193	-0.110779223968052	0.786279342618437	0.948418183329152
Merged-chr7-143054489-2	chr7	143053989	143054989	+	775.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110354)	promoter-TSS (NR_110354)	-803.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	5.04004737518868	4.85679571664084	4.8528856443336	5.32152069535935	5.25821004433068	5.2064767036818	0.714188576254224	0.050227353212231	0.285205384202362
Merged-chr7-64338926-2	chr7	64338426	64339426	+	666.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172742, exon 16 of 16)	3' UTR (NM_172742, exon 16 of 16)	35169.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	2.94029786058018	2.97862129715272	3.07067133348824	2.77812537210758	2.88984494344153	3.14176660102432	-0.261173681561806	0.708266402321005	0.923674318414978
Merged-chr16-4847258-3	chr16	4846759	4847759	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	intron (NM_030192, intron 1 of 15)	11843.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	4.0187703119978	4.05458580989122	3.99703420595169	4.21810236122175	4.1210608401172	4.25290145073151	0.484324618292937	0.307078674755157	0.703178643504612
Merged-chr4-52429630-3	chr4	52429133	52430133	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045175)	TTS (NR_045175)	9331.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	2.57851803968486	2.40884850043953	2.62830135955155	2.29915933362026	2.55980890165701	2.57855702531372	-0.318739071278532	0.699642336511482	1
Merged-chr12-55824224-4	chr12	55823727	55824727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2711.0	NM_001286263	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	2.93036802382938	2.97660916239182	2.88568343965555	3.06347056143008	3.16772997082121	3.19555457310075	0.964433239557374	0.149914774110045	0.516526232884001
Merged-chr5-135570618-3	chr5	135570112	135571112	+	933.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2437.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	5.70050813501448	5.87861636795667	5.63934568029782	5.05410632980849	5.24963114102182	5.35511160660971	-1.01316092031322	0.00288009704376273	0.0408048892929354
Merged-chr11-101556801-2	chr11	101556301	101557301	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 4 of 23)	intron (NM_008676, intron 4 of 23)	4147.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	2.62649863146089	2.72195964520973	2.83336323550878	2.5398042361101	2.57558245859701	3.18018300246439	0.338783642759873	0.676161818192026	0.912421384593547
Merged-chr16-30397164-2	chr16	30396674	30397674	+	956.366699	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8644.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	5.23204595245487	5.15204031973196	4.6941713289942	4.65246429558182	4.72113195808185	4.49193133768847	-0.952325861977129	0.0247561229501625	0.185929007892149
Merged-chr6-137823317-2	chr6	137822817	137823817	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	(TCTG)n|Simple_repeat|Simple_repeat	68740.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	3.33789794609685	3.32120847698538	3.30573846731752	3.14042663514313	2.88809683240435	3.147928137413	-1.16191794135223	0.0785734943095337	0.370245411557127
Merged-chr6-32461219-2	chr6	32460719	32461719	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-49922.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.53365878096715	4.65498084493463	4.53152476452628	4.35810458035898	4.03274068949252	4.14685342539096	-1.03628379178383	0.0234638142967259	0.179477448041186
Merged-chr18-75465149-4	chr18	75464669	75465669	+	692.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-49476.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.91102333786537	3.95176731980093	3.79762195157613	4.24424711890797	3.95392740538979	4.02392337727385	0.553712525813052	0.274095364232883	0.671562294016364
Merged-chr10-81406062-2	chr10	81405562	81406562	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3513.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.46279975691646	5.15575263238938	4.936048292495	4.92159723080858	5.32237712423909	5.1826931563519	-0.112363240367187	0.775883663717631	0.944804182096302
Merged-chr15-64078247-2	chr15	64077747	64078747	+	788.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-17799.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.62616640336897	3.56204073327283	3.53885994839279	3.75720476561628	3.64448045613947	4.14073807121183	0.918902120617896	0.10570477936596	0.433880433704445
Merged-chr1-77830330-2	chr1	77829830	77830830	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-315242.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.85675029449048	2.74894949095975	3.10738364741995	2.9484567144005	2.99382688404059	3.00791275567644	0.370520957816492	0.596875062647975	0.880066277050886
Merged-chr10-41883911-4	chr10	41883441	41884441	+	818.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-3498.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.65515551825767	5.42480052113535	5.95238560891786	5.51976252127322	5.52763804603557	6.31716236315346	0.265583907268532	0.503344973054102	0.836993715259811
Merged-chr11-86485174-4	chr11	86484672	86485672	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 1 of 8)	CpG	515.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	7.63913384531514	7.8414003959493	7.42897557137543	7.48627530430834	7.75711129037237	7.5483706680208	-0.0690784844901764	0.777993060573572	0.945295744103702
Merged-chr9-114744138-1	chr9	114743638	114744638	+	573.0	f1_c57bl6.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12935.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	4.26117344137536	4.15806694138601	4.05703126154364	4.77759262278348	4.80400361713627	4.55789252985848	1.41530193741789	0.00160436486435527	0.0260785293286332
Merged-chr4-150087755-2	chr4	150087255	150088255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177366, exon 1 of 4)	exon (NM_177366, exon 1 of 4)	252.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	7.05101336643427	7.21694725771444	7.1985556637844	7.29937934746762	7.35385335205351	6.35082317417472	-0.101022816661445	0.762264295321752	0.941547592462139
Merged-chr11-103966485-4	chr11	103965987	103966987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-238.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	7.86345180312707	7.73521286156918	7.48879368501426	7.36259926936754	7.80078968309895	7.77003923838926	-0.0719806183789309	0.777804849745422	0.945251190347279
Merged-chr3-136368772-4	chr3	136368307	136369307	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42741.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.66924116415931	3.67219881243219	3.61216875584427	3.81625300369786	3.47778964866662	3.68307417429689	0.030138673179652	0.956963537022457	0.989887454023164
Merged-chr13-94154683-4	chr13	94154155	94155155	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	96859.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	5.00794689123788	5.29948188892601	5.01923175792457	4.39048607487193	4.56822934493564	4.28973092048446	-1.58592237078139	0.000240002520099539	0.00580189706346381
Merged-chr19-34921358-3	chr19	34920860	34921860	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-998.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	5.19254726208899	5.31893312684726	5.21256163711171	5.25959523912019	5.51418548848011	5.13988735948984	0.166051327355923	0.642989758559899	0.89955790576874
Merged-chr19-42512757-1	chr19	42512257	42513257	+	639.0	f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-6048.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	2.55439591754246	2.5521554223157	3.03375127633374	2.5724236357266	2.44128915618254	2.76890315538012	-0.706305648597707	0.387653290229374	0.767720407550912
Merged-chr11-29130764-4	chr11	29130311	29131311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027869)	promoter-TSS (NM_027869)	60.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	6.18881215209314	5.95982200043782	6.18013071551722	6.61785760956202	6.40455795011633	6.06164039550283	0.4656755912748	0.127081100360748	0.476395344690209
Merged-chr4-53094489-2	chr4	53093989	53094989	+	974.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	65406.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.64064671757061	2.59857905902407	2.88437335013653	2.53384206321738	2.45601679053145	2.89972529773166	-0.384564076621748	0.631196142196673	0.895063064307722
Merged-chr19-6274434-3	chr19	6273926	6274926	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2470.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	5.11968617160976	4.8229508195886	5.27074327521942	4.59576856159592	4.15221191087119	5.0647659032797	-0.962462189055404	0.0480222112154218	0.277854957987123
Merged-chr14-40929366-1	chr14	40928866	40929866	+	585.5	f0_balb.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	18843.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.24519291163517	5.13403218499194	5.29732862359229	4.88381485498488	4.92395534071852	5.0733856072858	-0.56208021402016	0.123274809180178	0.469749511003124
Merged-chr7-69993149-3	chr7	69992649	69993649	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344673.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	3.41503322721372	3.34928173695252	3.06599149779724	3.27753560620575	3.02689866208121	3.43141774303626	-0.16046717672417	0.8104615080119	0.955054272231421
Merged-chr9-102522513-3	chr9	102522025	102523025	+	862.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024291, intron 4 of 10)	intron (NM_024291, intron 4 of 10)	16387.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	2.82088812477358	2.97351291675421	3.00746454292852	2.7264953032183	3.05673048072664	2.77684384631309	-0.316463886608337	0.668067860730776	0.908976375106763
Merged-chr2-117403917-4	chr2	117403417	117404417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61040.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.92763366111593	6.85486362380147	7.16305717886496	7.20363428827658	7.22852067941661	7.08434109570081	0.299242587135167	0.224707327848302	0.619609949365475
Merged-chr13-58512195-4	chr13	58511704	58512704	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	98673.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	3.57286324620371	3.36361518681785	3.4024893278617	3.51642114736549	3.40012081095424	3.03848361775418	-0.425130449732817	0.521619154525202	0.847183372504239
Merged-chr11-11781930-4	chr11	11781448	11782448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27014.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	3.15811812285688	3.27880282487432	3.22301427113785	3.58887113788645	3.25519000979431	3.29617853800136	0.667021079034581	0.287531875975785	0.684841916020985
Merged-chr10-88622295-4	chr10	88621796	88622796	+	958.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17144.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	7.22315302918416	7.60178929615172	7.07819709382786	6.74197683552264	7.17523747220259	6.64654010948585	-0.660846043794628	0.0258779895408087	0.190705495856134
Merged-chr11-69920582-2	chr11	69920082	69921082	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166590)	promoter-TSS (NM_001166590)	48.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	8.70612744844258	8.4952507732254	8.78436917129491	8.67817862547212	8.75121470664919	8.84400977288818	0.128613970360599	0.536967029114119	0.854250636315698
Merged-chr18-3283096-2	chr18	3282596	3283596	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013498, intron 4 of 6)	intron (NM_013498, intron 4 of 6)	-1349.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	2.34032254251842	2.48147297806943	2.26560989381667	2.65976718547858	2.34221717602241	2.79377451454552	1.4390268839815	0.103634688207711	1
Merged-chr5-123016116-2	chr5	123015616	123016616	+	862.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	1042.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	5.25391452474329	5.54650657392418	5.62443847833352	5.43318003173141	5.60257101203762	5.55109948806463	0.104361166048274	0.758751957509513	0.940287421764314
Merged-chr12-100053393-4	chr12	100052891	100053891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-58940.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.62290513037319	6.32797340356906	6.2316611095214	5.99019968405767	5.90029204555657	5.93000687918751	-0.798431778260286	0.00674772583611999	0.0761101764093632
Merged-chr10-24651332-4	chr10	24650793	24651793	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008813, exon 20 of 25)	exon (NM_008813, exon 20 of 25)	55851.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.38990727016908	6.66487751417421	6.43954422438548	6.64245285208395	6.83391533180041	6.1644426299325	0.135088206339293	0.660858998495016	0.906190308182195
Merged-chr18-5764897-4	chr18	5764394	5765394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	172247.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.58094274200093	6.32596944062801	6.1230861889022	6.64808256976426	6.7464102743875	6.33746264553067	0.373242512325454	0.209858101534699	0.601780780663032
Merged-chr17-29395530-4	chr17	29395042	29396042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34628.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	8.17047552001671	7.96008496663012	7.85644064243901	8.14615991623688	8.61188478013123	8.11974061543151	0.442718684870577	0.0774074953887541	0.367016371154779
Merged-chr1-161897385-4	chr1	161896889	161897889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20707.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	6.6262201571003	6.6339251427443	6.70663849633597	6.45400375560074	6.52224673233783	6.23794935128294	-0.373416825652184	0.162904378027824	0.536319834095876
Merged-chr3-137864443-4	chr3	137863943	137864943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316995)	promoter-TSS (NM_001316995)	-44.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	7.14252629644183	6.7946875773194	6.66227197865788	7.04011828176735	6.92495973919311	7.11309467228397	0.202636327521539	0.452075194090911	0.809286173636239
Merged-chr12-86241788-4	chr12	86241307	86242307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324488)	promoter-TSS (NM_001324488)	-51.0	NM_027405	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	8.06054675486984	8.50649773824279	8.19595374504586	8.10141215410044	8.50824670087071	8.10832127502207	-0.0157701227104912	0.95002927072349	0.988384895514575
Merged-chr10-67296974-1	chr10	67296474	67297474	+	562.0	f0_balb.idr	Intergenic	Intergenic	-11693.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.55262489888184	4.3906804938982	4.25455118819761	4.25612123142751	4.56254581290322	4.45782935929839	0.0623693913317474	0.890589147038136	0.97453903646658
Merged-chr4-57959419-4	chr4	57958920	57959920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3009.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	5.89508276234215	6.15270141244578	6.26545872189236	6.23994792912701	6.5543504804214	6.09310794991953	0.361331289152784	0.243080296100612	0.640367862483409
Merged-chr19-6336086-2	chr19	6335586	6336586	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168489, intron 2 of 9)	intron (NM_001168489, intron 2 of 9)	1047.0	NM_008583	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	3.56917912823992	3.34885745352047	3.58007016595782	3.39593507196044	3.35381347796914	3.59832515612273	-0.198930043385961	0.736150619080663	0.933046642264646
Merged-chr13-95868990-4	chr13	95868433	95869433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	22989.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.78467487606817	4.49610801660558	4.76409657596498	5.59404658192528	5.73576548074325	5.177163141815	1.784185695897	6.23845534852955e-06	0.000267550566708382
Merged-chr12-35047110-4	chr12	35046617	35047617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-72.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	9.01331447887669	8.9990543754356	8.73471677955773	8.8695076322917	8.86351927486684	8.79874202800299	-0.110878912532623	0.586679669042697	0.875615538765309
Merged-chr12-110776217-4	chr12	110775716	110776716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	38284.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	7.35984514667408	7.36912525219433	7.26072933079233	7.48801838949143	7.51269496868377	7.13116395020526	0.0953144664799629	0.69589525924947	0.919291538728398
Merged-chr6-122650074-1	chr6	122649574	122650574	+	573.0	f1_balb.idr	Intergenic	B3|SINE|B2	23650.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.28011120463519	5.9053256700936	6.30798860970258	6.17532297798166	6.21266810605398	6.12421401845619	0.00563610084261851	0.984923894616729	0.996832016727915
Merged-chr5-102034320-4	chr5	102033841	102034841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35580.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.5551849593988	7.28441143639926	7.40404308849426	7.53249844675416	7.75184517629421	7.54337422466074	0.289571759607584	0.219542146591471	0.613735463896719
Merged-chr17-83351812-4	chr17	83351303	83352303	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	872.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	6.42232294435442	6.03011266873534	6.20771492330727	6.24151452969089	6.18249668633279	6.14056853209908	-0.0691332602593749	0.813346221365258	0.955940138311315
Merged-chr17-70847245-4	chr17	70846742	70847742	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164077)	promoter-TSS (NM_001164077)	-465.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.64522020998147	6.07313856323434	5.60631520177571	5.91947384905249	6.09471661272436	5.41734760458832	0.0956697327722332	0.794924951242714	0.950946714902833
Merged-chr1-188984216-3	chr1	188983735	188984735	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153196, intron 10 of 17)	intron (NR_153196, intron 10 of 17)	23605.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	3.83899197328887	4.0124078087973	4.48872859641004	4.99650937452692	5.40290046362225	5.11586643246404	2.63442254441859	5.56667107039629e-08	4.25718340478717e-06
Merged-chr11-118740136-4	chr11	118739633	118740633	+	812.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	20908.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	2.83199592965821	3.13596182527997	2.77907241930171	2.83244485463331	2.7400363568184	3.15105145302868	-0.0674410218592845	0.928291185622341	0.983802612059568
Merged-chr15-27675815-4	chr15	27675313	27676313	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5729.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.06277998067141	5.99340243272597	6.15966406027721	5.75393216662539	5.96339548791142	5.5812406245342	-0.488891777943789	0.11791754831511	0.458608472620406
Merged-chr3-30572488-3	chr3	30571964	30572964	+	958.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	27406.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	3.83071826945898	3.67286386603843	3.81362695949623	4.73807448858168	4.77112294900619	4.26101320202515	2.42279983085478	2.52465875600994e-06	0.000122705494024576
Merged-chr13-8861134-4	chr13	8860628	8861628	+	962.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172445, exon 2 of 14)	exon (NM_172445, exon 2 of 14)	9916.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.59114834920614	6.00111645160398	5.63055957716378	5.92950721278772	6.00297338676031	5.54529495912031	0.161341432987462	0.638188939820931	0.897399197342002
Merged-chr10-125271705-4	chr10	125271232	125272232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	37084.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.7473775357111	6.03478708584257	6.2892499980475	5.93169397107774	5.82042717875727	5.70363837768365	-0.363993080538718	0.26290064404703	0.660891219379409
Merged-chr2-143951311-2	chr2	143950811	143951811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 19 of 23)	intron (NM_024281, intron 19 of 23)	35980.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.0782810680153	2.96665861459623	3.16244674093864	3.27259229342438	3.02418763086449	3.39815279070004	0.714272897481891	0.280908541729984	0.679037764809381
Merged-chr2-59189569-2	chr2	59189069	59190069	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	(TTTTG)n|Simple_repeat|Simple_repeat	28719.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.64284430993266	4.6155584707096	4.46843949893383	4.6326716564227	4.69348355071375	4.53616357899695	0.106802535457356	0.797176507424587	0.951678829711438
Merged-chr11-110380267-5	chr11	110379773	110380773	+	889.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18829.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.31278625466204	4.40887892565673	4.22299959070356	4.30832826902172	4.14583274175924	4.3807404044761	-0.129363532267818	0.777009174319924	0.944960604705842
Merged-chr14-25470393-4	chr14	25469905	25470905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11220.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.7822597159812	7.70946195247994	7.22465247885346	7.26280588591497	7.29838940620471	7.01974953169614	-0.593474037891627	0.0267845068579956	0.194845453005268
Merged-chr18-67289864-6	chr18	67289367	67290367	+	727.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	644.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	4.29748000447661	3.86351161899588	4.20509891622102	4.48630557495888	4.54624194336658	4.2269600883611	0.803913724292839	0.100239876191021	0.42218868283572
Merged-chr2-153109929-2	chr2	153109500	153110500	+	588.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	1532.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	5.59425863765499	5.50436378908811	6.25432632173195	6.13670225305124	6.03958555612683	5.98813479406814	0.42453469265711	0.230839908962757	0.62655634346664
Merged-chr7-99144540-2	chr7	99144040	99145040	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3396.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.14019614528865	4.95300535383545	5.52746276692864	5.63075035398282	5.54132474668561	5.38940986709876	0.617350251562244	0.0945044084010915	0.409774560300836
Merged-chr10-24173391-4	chr10	24172875	24173875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24058.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	4.72007864684181	4.72146740882877	4.88317597078778	4.55473717196915	4.54033277113475	4.80511589990735	-0.334523129847677	0.41350692583795	0.785137582664904
Merged-chr6-122656973-1	chr6	122656473	122657473	+	575.0	f1_balb.idr	Intergenic	RLTR22_Mur|LTR|ERVK	30549.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.62258733475375	6.50050046446321	6.83735135378348	6.79806950609986	7.02105247235959	6.96492879930956	0.438658669197382	0.0941089331737242	0.408632057168463
Merged-chr8-57489166-2	chr8	57488666	57489666	+	790.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_126553, intron 1 of 3)	ORR1A2-int|LTR|ERVL-MaLR	1203.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	3.32569068626045	3.37256109005994	3.32967975104157	3.39129543171952	3.34265888145089	3.40104211419548	0.129236675325876	0.827275885152271	0.959413110494372
Merged-chr1-39503353-4	chr1	39502851	39503851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24596.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	5.77836343627417	5.71502798760077	5.67683911067949	5.58272666650497	5.61883726698853	5.57322945219977	-0.245876868313567	0.430179774990487	0.796150673085838
Merged-chr5-72173205-1	chr5	72172705	72173705	+	790.5	f0_balb.idr	Intergenic	Intergenic	-5016.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	4.38932922213893	4.03990914904386	4.12496558770443	3.90451966372849	4.17091784441147	3.89161973049919	-0.545196845418843	0.286688704080749	0.683936104264423
Merged-chr1-72711922-4	chr1	72711443	72712443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009084, intron 2 of 3)	intron (NM_009084, intron 2 of 3)	683.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	6.73805434790625	7.1488249561746	6.78542614184053	6.73209540182931	6.80599869230764	6.87378624126718	-0.166897937093747	0.533431381459569	0.852457858765356
Merged-chr19-41320421-2	chr19	41319921	41320921	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-56417.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	4.72305507505386	4.50267130178512	4.40412702816024	4.63396771412555	4.56920739865109	5.04023423451308	0.46514153744604	0.293317878763917	0.690221391260893
Merged-chr14-121410364-2	chr14	121409864	121410864	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31134.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.42143341093955	3.63962367771443	3.5638313035193	3.29695704203985	3.38654299011831	3.41781976391305	-0.669016171706577	0.256788131316937	0.653899482362475
Merged-chr19-32292700-4	chr19	32292214	32293214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56602.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.8570102026639	6.2886903291496	5.55694064414853	5.40844532604311	5.18173968755761	5.19233086597523	-1.27502960168196	0.000548955245582101	0.0113063039788108
Merged-chr15-100676750-2	chr15	100676250	100677250	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-7250.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	4.79230106004705	4.84204239448847	5.18080596062587	4.88474024801113	5.36650791829344	5.5263640645941	0.716087653648252	0.0797828989933713	0.37356229021667
Merged-chr17-57459443-2	chr17	57458943	57459943	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 17 of 22)	RMER1B|Other|Other	85871.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	2.75848919259389	2.56391861409887	3.35306667663465	2.88345141304483	2.85074951572743	3.11177964442932	0.0639710075257483	0.937264140590742	0.986057836872162
Merged-chr1-153751818-4	chr1	153751227	153752227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 1 of 8)	ORR1A2|LTR|ERVL-MaLR	2301.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	8.13025435687857	8.36490493439477	7.93659271777653	7.92107477521451	8.33010296645139	7.71632756280322	-0.191472492171348	0.472548125482938	0.820550293768681
Merged-chr1-55473957-4	chr1	55473460	55474460	+	830.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	68014.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.2970236836532	3.1295479913998	3.17724516107702	2.98566930474368	3.0123842778631	3.4115911500348	-0.255922198598747	0.70294423018132	0.922063625862567
Merged-chr17-35170985-4	chr17	35170476	35171476	+	999.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361501)	TTS (NM_001361501)	5076.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	5.777464528943	5.63398859368098	5.76002901923314	6.01129807807381	6.29529840590152	6.14897638237189	0.769154454294422	0.0106030314970106	0.104694083873651
Merged-chr17-87083878-4	chr17	87083354	87084354	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23825.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	6.02007115056115	6.28187934334676	6.07333411422557	6.21045437274478	6.2150232367456	6.33984416006464	0.197366607993967	0.490452949469257	0.830053405840466
Merged-chr8-105394644-2	chr8	105394144	105395144	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18858.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	3.3448569697883	3.31135961117462	3.34547437196064	3.14481071983799	3.40831826631498	3.30399170199391	-0.154012512332107	0.802871579773996	0.953400450869743
Merged-chr18-61074818-4	chr18	61074334	61075334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008809, intron 14 of 22)	Charlie15b|DNA|hAT-Charlie	29684.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	5.21353387803832	4.78335837024952	5.05577856737192	6.3463821472376	6.20545646748185	6.69386197337704	2.56279402199618	1.39697184096485e-12	2.62984689916296e-10
Merged-chr7-142443567-2	chr7	142443067	142444067	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 3 of 5)	intron (NM_009405, intron 3 of 5)	1099.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	4.85013460501315	4.6937026940969	4.86035936581107	5.35464638730916	5.51135983870285	5.82654260851972	1.58561022798196	2.54753079086635e-05	0.000898960738110295
Merged-chr10-80434095-4	chr10	80433592	80434592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-439.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	6.52695157994092	6.34033577926901	6.32795634492917	6.93476264611756	6.59193430464286	6.77113843472136	0.581180719577411	0.0337581189713653	0.224643759066648
Merged-chr19-5568381-4	chr19	5567889	5568889	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033448, exon 1 of 2)	5' UTR (NM_001033448, exon 1 of 2)	365.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	8.21226021094182	8.14512802429089	7.88544809394086	8.15077800068296	8.3358071560345	7.90029615554995	0.0774122874690986	0.746080777416207	0.9362730409135
Merged-chr15-64185389-3	chr15	64184893	64185893	+	990.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	Lx9|LINE|L1	-124945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.9205789488102	5.15906759424831	5.18097013402022	5.78751832184418	5.91972406403077	5.47299627841686	1.28693761936155	0.00027725687504933	0.00652431845562914
Merged-chr7-19472601-4	chr7	19472091	19473091	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14097.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.57822476237651	5.20773493838137	6.14278217983922	6.68691602670954	6.56488065144239	6.43284431154696	1.49738932170369	3.55257555409e-05	0.00118590354773796
Merged-chr1-74715717-4	chr1	74715220	74716220	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024264, intron 1 of 8)	intron (NM_024264, intron 1 of 8)	2185.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	6.03597487319341	6.21842481981665	6.21973317893317	6.28974580068525	6.09201697916825	6.53398682592113	0.24694460256096	0.405887412370169	0.780439975167702
Merged-chr18-40308226-4	chr18	40307701	40308701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	49840.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	6.27702505290134	6.88385681216466	6.85346304366852	5.82566033399703	5.72181995799765	6.29313492058561	-1.22305177717547	0.000317060077483645	0.00728782732797213
Merged-chr17-70835290-4	chr17	70834810	70835810	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11467.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.66974100416204	7.78747089539102	7.48267949683407	7.72462065435355	7.92247995985553	7.5080880772227	0.114798616698326	0.637996401256872	0.897380718500389
Merged-chr5-143044170-4	chr5	143043700	143044700	+	928.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	68820.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.60051673787755	6.12499447453103	5.81076071738353	5.65028923304776	5.99796461205323	6.42303901689719	0.326617114774756	0.373118880665065	0.757006149061447
Merged-chr7-104352857-4	chr7	104352319	104353319	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175677, intron 1 of 7)	URR1A|DNA|hAT-Charlie	530.0	NM_175677	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	7.25943519640898	7.33098076968184	6.97100196511886	7.7618812659254	8.01252417164286	7.23531509350844	0.756584858898592	0.00908233788984574	0.0941593784124451
Merged-chr2-167805158-4	chr2	167804670	167805670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113993.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.65293888375423	8.52740422717016	8.34996150169611	8.45798147969997	9.00257414847037	8.33089300452333	0.168063210026745	0.520961735906144	0.846859243973634
Merged-chr11-80148399-4	chr11	80147925	80148925	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5737.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	4.89191456998406	4.77569694548157	4.7993859000578	4.75973103407097	5.02284972664682	4.93934167176583	0.203579307081444	0.600529887422162	0.881705413029542
Merged-chr1-191955354-4	chr1	191954854	191955854	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22016.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	4.74755949653022	4.74284815513072	5.04674190198625	4.43346207101572	4.36265610547955	4.6168340936385	-0.907668154065632	0.0323674256101906	0.218694985803714
Merged-chr2-167699048-2	chr2	167698548	167699548	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	7871.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.56596614080496	5.30738147405379	5.76832972539752	5.60983260100675	6.01820038252478	5.56328962164794	0.385021051158642	0.278084732500048	0.675410094336204
Merged-chr11-48833863-4	chr11	48833307	48834307	+	942.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	-3664.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	6.09875419435652	6.45722309849914	5.95303113285345	6.16510499861381	6.33495664563865	6.43525872425344	0.189855875504215	0.536554376572618	0.854055228150433
Merged-chr14-25471344-4	chr14	25470859	25471859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	12174.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.07321019163092	7.03506719651726	6.64886026096545	6.57760769054684	6.6108358464976	6.49331690485447	-0.590885250681437	0.0283175561553218	0.201474750968107
Merged-chr5-122131816-4	chr5	122131336	122132336	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3057.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	6.66906591417809	6.68527571317418	6.2466088971302	6.66817814023108	6.63637342842957	6.02283677824879	-0.112800957501378	0.727583798465649	0.930204882969987
Merged-chr1-172317429-1	chr1	172316929	172317929	+	706.0	f1_balb.idr	exon (NM_080419, exon 3 of 7)	exon (NM_080419, exon 3 of 7)	5062.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	2.68709675950654	2.82039580519616	3.12407546246914	2.48098157526083	2.54134241969229	2.69966375806257	-1.81549602140605	0.0264933219868643	0.193458212890128
Merged-chr18-57581815-4	chr18	57581321	57582321	+	926.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-29424.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	4.11415259014988	4.44108886446198	4.21099854120764	4.28029447444466	4.47524806319045	4.57901512515868	0.468272506373545	0.312754573630782	0.707413942140844
Merged-chr17-24896099-2	chr17	24895599	24896599	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-401.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	4.45964706941183	4.65213371887455	5.0657839366267	4.86955987411135	4.73121675265973	4.96663881851471	0.264329666914335	0.539029284369598	0.85572026801956
Merged-chr4-41314980-4	chr4	41314472	41315472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026893)	promoter-TSS (NM_026893)	-71.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	7.23880617320457	7.53433208442193	7.35250087045622	7.19069372321147	7.43916254062079	7.59923160879976	0.0504789788481041	0.840626659471112	0.962819298477451
Merged-chr17-45572593-4	chr17	45572097	45573097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 1 of 10)	CpG	664.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	7.81550455974898	8.0538400181354	7.54866608069928	7.38836357361993	7.90219796747176	7.66351266765808	-0.223519564371695	0.403735895204732	0.778974548258483
Merged-chr7-80343097-4	chr7	80342594	80343594	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026812)	promoter-TSS (NM_026812)	-43.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	5.21628398030582	5.34530962814596	4.95080039733675	4.74148196288899	4.6885687010623	4.65472211215294	-1.08509014491374	0.00558385431288677	0.0662703394190105
Merged-chr12-91588498-4	chr12	91588020	91589020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	CpG	1129.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	8.32927437464494	8.51194001470438	8.0374571823942	8.20836007531513	8.51160077404351	8.30450539298707	0.0514764294064169	0.828754068616786	0.959883194018256
Merged-chr4-149137523-4	chr4	149136995	149137995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027263, exon 1 of 5)	exon (NM_027263, exon 1 of 5)	105.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	4.96504817609278	4.95072573142649	4.99117189230171	4.99904157595354	4.87597081664874	4.87366655898037	-0.109577815553702	0.769549191817862	0.943140664763387
Merged-chr18-30513808-4	chr18	30513297	30514297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	240932.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.23868011502699	4.42275968143901	4.30562304927398	4.74341335362337	4.77870775834529	4.93250915252885	1.19305161715311	0.00511524719543843	0.062144764000298
Merged-chr18-23890462-1	chr18	23889962	23890962	+	774.0	f0_balb.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-64226.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	2.90058889592933	3.24148984480085	3.44881369664298	3.07412797202698	2.71081577342203	3.25951671990672	-0.771422400464621	0.31021415033298	0.705774725095196
Merged-chr9-116135591-2	chr9	116135091	116136091	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	39772.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.00857497415394	5.87628699276405	5.59736603377799	5.20714596934762	4.74864390680139	4.91916855361065	-1.72818619747196	3.44231327289566e-06	0.000159658864443201
Merged-chr16-95753581-2	chr16	95753081	95754081	+	641.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51174.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.76740242431057	3.55030059659611	3.46471424599442	3.93365937803086	3.61055884207481	3.81175312797578	0.610444286528902	0.28368563536285	0.681376161050487
Merged-chr14-31402212-4	chr14	31401714	31402714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	L1M3|LINE|L1	15463.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.86693839524266	7.84468396610526	7.647082988838	7.57418810876629	7.65179545201358	7.50796550152376	-0.306073167304326	0.170475620821489	0.547846214064376
Merged-chr19-3377120-4	chr19	3376600	3377600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-11757.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	6.87225602231707	6.87159688037499	7.26607932442686	6.99070865171887	7.4159456108247	7.25645936710699	0.344751306930272	0.20506800148723	0.595694220420628
Merged-chr7-99382656-2	chr7	99382156	99383156	+	952.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 1 of 17)	intron (NM_201352, intron 1 of 17)	1138.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	3.56191199615403	3.69410374418677	3.66505878269525	3.64426930618178	3.62861509178225	3.73470826764873	0.0879243415587518	0.871567277092861	0.970227816594767
Merged-chr10-67204707-2	chr10	67204207	67205207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	18957.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.6305879130019	6.83715255936861	6.8100621357246	6.78535166304546	6.99810888281116	6.93997260515596	0.23558745735047	0.353939125799209	0.741043902659668
Merged-chr10-30675714-2	chr10	30675214	30676214	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	RMER10A|LTR|ERVL	-19847.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.79861309707669	6.87891392494502	6.59588320430854	6.88634972979072	7.11442344279314	7.19593986346757	0.458615683085363	0.0772965337482475	0.366645193257564
Merged-chr13-67109069-1	chr13	67108569	67109569	+	987.0	f1_balb.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	4959.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	5.83797842121899	6.30099928033438	6.30212939565138	5.9434148857174	5.71131416780585	5.59456076446334	-0.697789954002838	0.0348752180456958	0.22904432914833
Merged-chr1-16518878-4	chr1	16518510	16519510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347044, exon 1 of 14)	5' UTR (NM_001347044, exon 1 of 14)	105.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	5.66657853547268	5.36519059205416	5.36715984433189	5.39743487387373	4.58918097697526	5.24256270321856	-0.716351135631903	0.0912600687567881	0.402010048235207
Merged-chr8-121877455-3	chr8	121876959	121877959	+	968.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30227.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	2.34322925240116	2.31305095508985	2.26876814087762	2.75696391594749	2.34457891367374	2.9189899701224	2.35730695165464	0.0103668784076401	1
Merged-chr15-67154041-2	chr15	67153541	67154541	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	22841.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.4711491742472	2.61784438859079	2.68544668235082	2.44809761664452	2.14847593621263	2.63810564560601	-1.00259659399337	0.278233742244963	1
Merged-chr6-72881418-4	chr6	72880901	72881901	+	962.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	17891.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	5.59176166795027	5.49538531730347	5.29329431653998	5.50026638412337	5.42235065397964	5.59703906747337	0.0511594787468495	0.878694225225218	0.972000507462599
Merged-chr9-61702618-4	chr9	61702069	61703069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211941.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	7.39379156231846	7.52977149061033	6.88402139797071	7.11937188350725	7.54183288111295	7.16784605234706	-0.015649572724057	0.957025690490093	0.989887454023164
Merged-chr4-149779130-4	chr4	149778553	149779553	+	870.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4786.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.75850972792335	4.95425769221055	5.12619794395253	4.83263125639763	4.96516741139261	5.05978269746345	0.0142686629183272	0.970719720844443	0.993550070508075
Merged-chr8-77452675-2	chr8	77452175	77453175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-64381.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	5.96397733182944	6.03492316045106	5.88317639335184	5.51780597968415	5.44716777470552	5.24941700517186	-1.00617632570431	0.00173939501717399	0.027747618977955
Merged-chr11-114830190-4	chr11	114829637	114830637	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21395.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.81010603889451	4.76036857767494	4.80169875954295	4.77881936370055	4.77966161418306	4.90358206662832	0.0616303617436396	0.873700830851604	0.970440430875665
Merged-chr19-56720450-4	chr19	56719956	56720956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1916.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.12472784742598	6.78844306310729	6.20799043280528	6.77872366293202	6.81679425988842	6.24647846351113	-0.19458707735447	0.578406133979967	0.872437129840066
Merged-chr13-98814708-4	chr13	98814263	98815263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	CpG	686.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	8.29441948238615	8.20755135705901	8.08592831875626	8.34887738888134	8.0927871092406	8.12767217605853	-0.00969024900630006	0.96448253877682	0.991478598183903
Merged-chr9-13581445-3	chr9	13581002	13582002	+	902.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-38487.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.66388564287983	4.75591151879491	4.34801108350925	4.42434669290828	4.34014856655186	4.37048263411916	-0.58593567352137	0.18537396306001	0.569470877644115
Merged-chr13-69538474-4	chr13	69537975	69538975	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4611.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	5.13110219855809	4.96705655216744	5.22307439482299	4.3594977743038	4.05413490309085	4.21494836368571	-2.21520367382422	6.25993063918425e-07	3.58236800980222e-05
Merged-chr16-4383488-2	chr16	4382988	4383988	+	776.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	37010.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	4.74879605938024	4.86653508086977	4.65624650654118	4.57119440659647	4.43846459589134	4.51332338849491	-0.624718158719673	0.130317562197594	0.482553678756503
Merged-chr7-55912319-2	chr7	55911784	55912784	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	ORR1D2|LTR|ERVL-MaLR	50209.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.37848700486986	7.58081738982574	7.64536277374049	7.83041899456576	8.12988562227209	7.83201606885408	0.587502842961175	0.0127586642148182	0.119351398723097
Merged-chr12-40271406-4	chr12	40270897	40271897	+	934.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	48033.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	3.30328293484591	3.16689459192083	3.15968584048218	3.06491898461726	3.07557714243109	3.11374165259463	-0.565530226626998	0.378724647472084	0.761236815876928
Merged-chr12-117481890-4	chr12	117481391	117482391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34588.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	7.82682729877505	7.39763302663764	7.23723939002942	8.08258536990529	7.85286692666478	7.62528682740302	0.505417702680196	0.0656337380892394	0.334225953422854
Merged-chr9-90062079-4	chr9	90061559	90062559	+	856.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007801, intron 3 of 11)	intron (NM_007801, intron 3 of 11)	7792.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.704559507032	5.43392474894413	5.39997477103811	5.42552043569146	5.18896074289461	5.52185218784799	-0.290161605092767	0.406443288848753	0.780676741566939
Merged-chr2-18898123-4	chr2	18897622	18898622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-96304.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	6.49631979714594	6.52743423538138	6.44767343555928	6.5620976633905	6.50008498865047	6.45173344881873	0.0221540990229974	0.932179041151518	0.985074623409702
Merged-chr1-182909290-3	chr1	182908760	182909760	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45528.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.71402916224758	5.74155800168812	5.08226171573307	5.0463533258418	5.33524395157264	5.22110030247365	-0.680193995847737	0.0795612529436599	0.373049291949513
Merged-chr2-90489869-2	chr2	90489369	90490369	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-10695.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.88990268351795	6.71987195514294	6.81085289366446	7.10200300667027	7.41998488349758	7.27478012932978	0.709987930972931	0.0044802083789659	0.0566979739615201
Merged-chr13-77044579-1	chr13	77044079	77045079	+	550.0	f0_balb.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	90889.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	3.89222350362884	3.67562454082846	3.42590580561176	3.11713212991474	3.03646743043765	3.32308876378903	-2.1743718297432	0.00109610034283944	0.0193393378555947
Merged-chr1-132011942-4	chr1	132011453	132012453	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	4348.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	5.20548117279738	5.32646565002968	5.04932698836353	5.54875035446046	5.73274851005247	5.32681016262519	0.683595845608162	0.0552001526012534	0.302016972916127
Merged-chr9-50554856-4	chr9	50554340	50555340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357222, exon 1 of 6)	5' UTR (NM_001357222, exon 1 of 6)	140.0	NM_001357222	16173.0	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	7.183161320198	7.19747413569945	7.26969607204839	7.06263284806827	7.30545584877037	7.47427253420468	0.108447793288333	0.659247915652965	0.905282710592665
Merged-chr1-54910063-4	chr1	54909549	54910549	+	841.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	16338.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.86541131775027	4.21745180385624	4.37464096188635	4.53446813153297	4.45823301874924	4.69062560859163	0.0853970563293674	0.858261513050409	0.966867261603628
Merged-chr5-99630311-4	chr5	99629786	99630786	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	98774.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	1.97872916089646	2.11472512426242	2.0154797698059	2.37533958686772	2.25368948926748	2.43026079801223	2.4273286652504	0.0144762363378619	1
Merged-chr2-78868892-8	chr2	78868388	78869388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009454)	promoter-TSS (NM_009454)	-159.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	6.58633815741929	6.13087865573671	5.77266021748154	6.55006456317814	5.70748437468383	5.75055250689875	-0.239947227150257	0.553981699293576	0.862575362378324
Merged-chr16-11001103-2	chr16	11000603	11001603	+	930.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	-7795.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.83578830422504	7.89756781841545	7.890175751106	8.09230094123266	8.09673998027665	7.69706208412874	0.154736232395254	0.503562152395173	0.837070472600639
Merged-chr11-79529357-2	chr11	79528829	79529829	+	922.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1280.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	7.74738991107968	7.85326985105076	7.63667360837799	7.93451020991098	8.25183788075163	8.01814643582147	0.465825286518444	0.0411127727880836	0.253063441200685
Merged-chr2-164746018-4	chr2	164745543	164746543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133763)	promoter-TSS (NM_133763)	28.0	NM_133763	76233.0	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	7.59409098583224	7.09128013801434	6.95807302055405	7.69261179997402	7.0527040148511	6.7631653131417	-0.0194190547657016	0.954680298410998	0.989617250984245
Merged-chr17-24221244-1	chr17	24220744	24221744	+	901.0	f1_balb.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	-393.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	4.62075924148072	4.37335610713385	4.41400922372031	4.2693958536055	4.52027302404508	4.09938701467771	-0.395900172729977	0.401041902462446	0.777158973264623
Merged-chr7-122520510-4	chr7	122520000	122521000	+	890.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 7 of 16)	intron (NM_001316672, intron 7 of 16)	-151244.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	3.25938744919301	3.06906219198694	3.16918529001337	3.19898665939255	3.19690551075097	3.06154457995816	-0.045119919767412	0.944176488751153	0.987590721167621
Merged-chr15-96658948-4	chr15	96658436	96659436	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16023.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.54735148675027	3.23384091691384	3.23641845825214	3.59060362131915	3.46750863566591	3.79664778999868	0.977060003378184	0.114845644830804	0.452465739350451
Merged-chr13-41828795-1	chr13	41828295	41829295	+	610.0	f0_balb.idr	intron (NM_001145875, intron 1 of 6)	intron (NM_001145875, intron 1 of 6)	18693.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	2.51945139882613	2.4808635080989	2.67672047247888	2.39182875319655	2.43559660669782	2.86500498186515	0.0996881403910944	0.903502597244697	1
Merged-chr2-129401524-2	chr2	129401024	129402024	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30385.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.04261727695705	2.84936499087055	2.96190108943497	2.76995263577595	2.5247386949649	2.85514953533052	-1.23920240385968	0.104758989490937	0.431908928627582
Merged-chr5-12160966-4	chr5	12160444	12161444	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-222222.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.53406094786705	5.06273572552302	4.98175482757165	4.9441013491781	5.02216789650962	5.01162402891377	0.249438541997569	0.541927531712877	0.857018905554292
Merged-chr3-88424664-4	chr3	88424170	88425170	+	921.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	471.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	6.70612396299704	6.5298371851635	6.00827295944708	6.73379570257168	6.86360076742374	6.39058904399536	0.35847538311019	0.266711434857436	0.664172509867066
Merged-chr19-32760636-4	chr19	32760152	32761152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	3075.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.49979106699883	7.52576880811518	7.03566060827198	7.64722142479444	7.91161145182456	7.27966642259062	0.388932628602585	0.1730882239549	0.551834359126378
Merged-chr7-25779292-2	chr7	25778792	25779792	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	RMER10A|LTR|ERVL	9441.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	3.46465522764914	3.50673821454784	4.27314906783133	4.05824087233712	3.56735582065632	4.00408649020385	0.279408697435754	0.662934672096208	0.90692994613967
Merged-chr19-17250174-8	chr19	17249666	17250666	+	840.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89339.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.9959022552003	4.64530467088985	5.02823266125762	5.23443800529879	5.23796611308758	5.25673270116491	0.737870430460715	0.0514420981172276	0.289206589557218
Merged-chr17-29346973-2	chr17	29346473	29347473	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347335, intron 1 of 11)	intron (NM_001347335, intron 1 of 11)	354.0	NM_001357762	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	4.72892020948527	4.87278874737159	4.65100831137337	4.81246715022242	4.94476487415222	4.91254091344931	0.295772534046795	0.450977714620109	0.808744879805816
Merged-chr1-173942530-4	chr1	173942050	173943050	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302651)	promoter-TSS (NM_001302651)	-58.0	NM_001302651	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.9701856694725	5.69264952506739	5.8823886916171	6.36010038091255	6.56671282920128	6.3948375854896	1.01058287448955	0.0005263682572985	0.0109140418523034
Merged-chr8-94093081-3	chr8	94092582	94093582	+	948.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5729.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	4.40835237988178	4.23020554803576	4.11894295188574	3.98006761406876	4.0910930782993	4.04056410843219	-0.631207972604284	0.189434001356635	0.575270962951931
Merged-chr19-41263448-4	chr19	41262964	41263964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 1 of 14)	CpG	540.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	8.53139770637441	8.2878802509185	8.5183970614855	8.48536034881075	8.01666123090928	8.5329352641181	-0.122566187145272	0.61552918429649	0.888042313121031
Merged-chr5-24688576-2	chr5	24688076	24689076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2761.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	6.52200385884572	6.68087860709533	6.13189392926437	6.41684372881907	6.44504486594639	6.05017295918376	-0.244975143844498	0.430304362161484	0.796209952783757
Merged-chr16-13864110-2	chr16	13863610	13864610	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	RMER15|LTR|ERVL	39035.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	5.02917823322434	4.82353248072083	4.99509838032629	5.34365463357177	5.4414936581088	5.58160477666331	1.0331904412841	0.00397096352166389	0.0516597768465617
Merged-chr6-137694156-2	chr6	137693649	137694649	+	654.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-40933.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	3.79546925209334	3.37381495773518	3.5267894407208	3.39394294291089	3.19936612633239	3.54411249192859	-0.74430241248744	0.230346844859248	0.626192360633515
Merged-chr11-48799648-2	chr11	48799148	48800148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-712.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	8.21458136908188	8.48528225470739	8.25300316829797	8.44691679633863	8.72115261848764	8.11787336123034	0.18783012653889	0.450454441136073	0.808381424708846
Merged-chr10-79874482-3	chr10	79873999	79874999	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033210, exon 1 of 6)	non-coding (NR_033210, exon 1 of 6)	135.0	NM_181681	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	2.9690098454152	2.88550603486442	2.88334128232031	2.75001410157073	2.4711301164272	2.89649726606704	-1.06016713328827	0.177143885481658	0.558071650127133
Merged-chr7-63989909-4	chr7	63989418	63990418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-51003.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.42440077872755	3.72238969800366	3.4119990180316	3.76777952701339	3.32792876037995	3.59721606640962	0.146576741704349	0.810425129910724	0.955045521890034
Merged-chr6-82985214-3	chr6	82984717	82985717	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	RLTR20A3_MM|LTR|ERVK	38295.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	4.25328035925111	3.92695356833943	3.7617005921275	4.21051282820152	3.81599336837328	4.09318567409666	0.122925880021541	0.820050507612311	0.957445216980616
Merged-chr8-124247729-4	chr8	124247241	124248241	+	904.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	MTD|LTR|ERVL-MaLR	16347.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	2.89734068178329	2.92459713973611	2.99465622766507	3.3422390032942	3.00929947574898	3.40729922651871	1.43446339059195	0.0366193407364721	0.235509514917326
Merged-chr14-73058023-2	chr14	73057523	73058523	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8909.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	2.92116665608194	3.19381989284758	2.99107047547046	2.71297333707657	2.82145665456193	3.00429534759504	-0.970495769490778	0.179847677100008	0.561345475440548
Merged-chr13-23749955-1	chr13	23749455	23750455	+	579.0	f1_c57bl6.idr	Intergenic	Intergenic	-1133.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	3.03453180306219	3.01583620445878	2.86018783157405	3.14594158499933	3.18867946574024	3.29382021640796	1.02548369383071	0.127056389945721	0.476371292506808
Merged-chr1-39936703-4	chr1	39936198	39937198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	35785.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.00455303473942	3.63064232234831	3.58847438152508	3.67389423597123	3.67623823982478	3.60415432853505	-0.360218289842881	0.524834227022262	0.848833934932934
Merged-chr5-123862827-3	chr5	123862326	123863326	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030701)	TTS (NM_030701)	2690.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	7.82152148354382	7.75523850573658	6.99127299894374	7.85123302258894	8.31247539288714	7.69435624546321	0.575552274333819	0.0703789718727392	0.347604528496877
Merged-chr4-44168321-4	chr4	44167815	44168815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	-32.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	5.88079070881226	5.9330024979448	6.08632131801125	6.12909232321965	6.06070309602425	6.05946853612456	0.209645836580415	0.469079434670292	0.818883765302854
Merged-chr3-96264008-3	chr3	96263528	96264528	+	860.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	-711.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	7.15518890136529	7.32524160208869	7.09723522218969	7.43096194707561	7.84764131405122	7.44944811446944	0.587055244835781	0.0213428738758338	0.168571224438574
Merged-chr16-91408781-2	chr16	91408281	91409281	+	767.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	MTEb|LTR|ERVL-MaLR	2546.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.10719931030338	5.64767842023874	5.88964069953743	6.1199488300391	6.17311988393846	5.71394876102769	0.2316983023623	0.486795764146686	0.827985697457807
Merged-chr1-45919150-4	chr1	45918681	45919681	+	725.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	6413.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.55818951703785	6.5476389121195	6.48483785309966	6.6865722557824	6.99177903229728	6.26261348925744	0.262352175889539	0.386686124256971	0.767154667509758
Merged-chr5-122644393-4	chr5	122643930	122644930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	519.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	8.04967629051504	8.13276544415198	7.73334766890326	7.86397079149406	7.92420808208558	7.16844638194665	-0.401523992179195	0.165599624037576	0.540743015340971
Merged-chr8-125663601-2	chr8	125663101	125664101	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6217.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	2.61143477793132	2.56896602758049	2.69747110178655	2.70473181105689	2.37027348874785	2.58300519587774	-0.387323373371712	0.626697988151719	1
Merged-chr12-85390512-2	chr12	85390012	85391012	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-15795.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	5.43738973746475	5.232654231115	5.44050070353016	5.3688118874269	5.31847975040834	5.66447308892197	0.152933987251139	0.660355914200111	0.905929432585967
Merged-chr10-44011595-4	chr10	44011088	44012088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6742.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.92015360190704	5.86836224762691	5.90421207678077	5.71183209114625	5.73983488971461	5.79421521663336	-0.269892438046695	0.367328966788961	0.752232444097654
Merged-chr7-12991310-1	chr7	12990810	12991810	+	587.0	f1_c57bl6.idr	exon (NM_009512, exon 5 of 10)	exon (NM_009512, exon 5 of 10)	6882.0	NM_009512	26459.0	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	2.40725522966661	2.18566203105113	2.49536208463381	2.43234983295811	2.32537775986317	2.69056851039571	0.745587089054537	0.386331571407479	1
Merged-chr5-123076760-2	chr5	123076260	123077260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	CpG	485.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	7.01075725617948	6.8662388587657	6.38162944096089	6.58511664689608	6.40007927286868	6.44189804680441	-0.498604609128177	0.0902785366457743	0.399521481850518
Merged-chr2-4917547-4	chr2	4917061	4918061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1435.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	6.52609697129003	6.84313592860365	7.15061396405651	6.8213784071915	7.17235893233186	6.77948641397333	0.134503092333539	0.650561048628247	0.90263121868461
Merged-chr11-69848250-2	chr11	69847725	69848725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023564, exon 6 of 8)	exon (NM_023564, exon 6 of 8)	1581.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	2.77657371274516	2.58719493222773	3.40648730828771	2.59474373915941	2.43380206737471	2.72066902094627	-1.98507111136307	0.0218450950387009	0.171259473646133
Merged-chr4-128659295-2	chr4	128658795	128659795	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4593.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.6584748526925	4.65056389868746	4.76920417843585	4.48636383109601	4.67920065037778	4.90509970654094	0.0100555412230151	0.980704635350126	0.995560772285461
Merged-chr3-27155073-2	chr3	27154573	27155573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040548, intron 2 of 2)	intron (NR_040548, intron 2 of 2)	1047.0	NR_040548	76657.0	Mm.417839	NR_040548	ENSMUSG00000097584	1700125G22Rik	-	RIKEN cDNA 1700125G22 gene	ncRNA	3.12739957182	3.07201643545843	2.96419066153436	3.0780185847098	2.93215887929931	3.15622414532816	-0.029411366284579	0.964873690857223	0.991685174040957
Merged-chr6-54080476-1	chr6	54079976	54080976	+	565.0	f0_balb.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	40544.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	2.32592372490032	2.4846994269925	2.28297474037551	2.46913141460407	2.29065464818648	2.61673297798891	0.563717924862697	0.506824919580679	1
Merged-chr7-101881090-2	chr7	101880590	101881590	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291353)	promoter-TSS (NM_001291353)	-235.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	3.58794607837956	3.32341074686965	3.85179046787731	3.42209490194344	3.34059327726199	3.9193524113973	-0.0700460891485116	0.912525273838665	0.98036672673425
Merged-chr11-114676585-4	chr11	114676173	114677173	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1205.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.00747908689407	6.24424749273466	5.95252895890878	6.35262433682157	6.24940905959461	6.29883027325332	0.364140479577791	0.205825592867477	0.596447652812717
Merged-chr7-16019629-4	chr7	16019107	16020107	+	952.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-20112.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	6.10453505354812	6.44833737953508	6.69964238378284	6.17438225917344	6.36893201998866	6.19682319484021	-0.291064510221435	0.34293288513193	0.731829383859291
Merged-chr9-56417661-4	chr9	56417156	56418156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	394.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	7.19642619385057	7.06042319069788	6.86887321414554	7.17909334514283	6.95639466713997	7.14479224864007	0.0552357522358508	0.826541895300816	0.959136713258354
Merged-chr19-56398511-4	chr19	56398018	56399018	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1389.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	4.17810518033673	4.39653170335416	4.0981751227723	4.38920601211867	4.3642216368942	4.56697638836361	0.520389025548025	0.259327674883934	0.656900978680461
Merged-chr14-36968805-4	chr14	36968295	36969295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-31.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	6.31034218287657	6.32182168850409	6.22796594403001	6.36092633325574	6.34936177763053	5.65565366764701	-0.186261797858654	0.572870155391587	0.869934493236159
Merged-chr1-182409047-4	chr1	182408530	182409530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173378)	promoter-TSS (NM_173378)	-137.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	6.31844424800919	6.62566865883923	6.33919112714177	6.54157113673276	6.46583478983158	6.21295461705884	-0.03274516476584	0.90910399537185	0.979384717565381
Merged-chr5-122281370-4	chr5	122280861	122281861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3037.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	6.0480362847866	5.98706810177541	5.93305352085083	5.97358925661975	5.82952344189675	5.53172581816202	-0.337319898171815	0.282787541438871	0.6807006950826
Merged-chr18-69662358-4	chr18	69661855	69662855	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-263204.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	5.54623544799989	5.236324208767	5.47056197402594	5.47671188643307	5.39576036146907	5.03594219404438	-0.185289537547398	0.611402348442156	0.886082952053069
Merged-chr11-3159816-2	chr11	3159308	3160308	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33655.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.66037698216292	7.20059494834105	7.3313443459831	4.62280087850717	4.26115984840494	7.68947228222422	-0.766086512188486	0.748181782394129	0.936880860325556
Merged-chr7-45091377-3	chr7	45090930	45091930	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355045, intron 2 of 6)	intron (NM_001355045, intron 2 of 6)	783.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	4.4366884195254	4.61395516880385	4.24718435759889	3.71662057599171	3.43613188762713	3.57025509609597	-2.85270028406362	6.89547870264158e-07	3.90046901352414e-05
Merged-chr8-82372399-1	chr8	82371899	82372899	+	767.0	f1_balb.idr	intron (NM_008357, intron 2 of 7)	PB1D7|SINE|Alu	30187.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.22356610058535	4.28185671189493	4.4476257676337	4.54862255226016	4.5478193419022	4.95334288261837	0.929099637413111	0.0377868967674441	0.240361754164474
Merged-chr9-108339207-4	chr9	108338716	108339716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001329528, exon 1 of 3)	5' UTR (NM_001329528, exon 1 of 3)	136.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	7.83675267104251	7.61335121458568	7.57014826607788	7.6850090569287	7.84671649018792	7.49536127735398	0.0129028032298987	0.95689238163301	0.989887454023164
Merged-chr10-37140421-5	chr10	37139850	37140850	+	900.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1424.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.29423289544517	7.47194593467221	7.6099608499024	7.44535979185447	7.81187505840176	7.77934922834195	0.334556818353997	0.174047697015852	0.553218762827373
Merged-chr12-79168097-3	chr12	79167595	79168595	+	892.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	4363.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	6.52134100479972	6.43077811965407	6.29934806480439	4.29464769413544	3.88512226013373	4.83542726111901	-4.45385955171163	1.4562195400577e-06	7.54008185993286e-05
Merged-chr7-34391523-2	chr7	34391023	34392023	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	3.28425205702399	3.3513288734973	3.58423837808364	3.55475723213167	3.4464529967256	3.65375281996238	0.535476668106135	0.363679705643552	0.749305999992549
Merged-chr4-133968813-2	chr4	133968446	133969446	+	862.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-955.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	3.0707926226967	2.80075895627513	3.29295834814785	3.05936083442718	2.65582140957052	2.97249674932337	-0.742599786886365	0.326213721169246	0.718559664091347
Merged-chr12-100205397-2	chr12	100204897	100205897	+	739.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	5253.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	3.10449365343711	2.86903612098414	3.3075645239159	2.99578532167054	2.9850594325399	3.10416405653637	-0.325144919529046	0.63572509212639	0.896757062179863
Merged-chr14-72581225-4	chr14	72580717	72581717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 7 of 25)	intron (NM_207636, intron 7 of 25)	128786.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.63639525098491	5.67576785978647	5.7718204457934	5.47504583576741	6.07077274670401	6.15978557330001	0.438134921401342	0.209343835115199	0.60080783905906
Merged-chr15-57773025-2	chr15	57772525	57773525	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	Tigger9b|DNA|TcMar-Tigger	78358.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	3.56662530612537	3.56355555456164	3.56980764435766	4.03457642121138	3.90954536147392	3.85698334473088	1.23182012552645	0.0214947620665271	0.169435756142608
Merged-chr13-119713267-4	chr13	119712770	119713770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	22919.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	4.61601016170537	4.68251310075915	4.91920330306506	4.11632914310542	4.501770533523	4.45859140272026	-0.896234062430749	0.0479150680130433	0.277524500851267
Merged-chr11-20915269-4	chr11	20914750	20915750	+	927.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84142.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.13442468934827	4.85856007501818	5.07892510674933	5.16776304746698	4.93718828151506	5.38912737447664	0.29096746200864	0.451488700445333	0.809090898196615
Merged-chr17-43332510-3	chr17	43332017	43333017	+	870.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27914.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	3.11995156540201	2.95541592105303	2.82649101020688	3.1498723008849	3.133987971236	3.09086097019281	0.663132699402441	0.333690049375681	0.724517434137507
Merged-chr10-119064251-2	chr10	119063751	119064751	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13752.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.55933669623896	6.22129112727204	6.13480577435026	6.390433678195	6.28496302508578	6.08133361239061	-0.102518366368576	0.732432246373481	0.931782229960786
Merged-chr1-43826764-2	chr1	43826264	43827264	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	944.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	5.17021319807475	5.17013262170912	5.12003732729192	5.09601263868916	5.16258508201878	5.28101763906109	0.0447603519933743	0.899262406106835	0.976545244735099
Merged-chr10-80117203-6	chr10	80116732	80117732	+	850.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301853, intron 1 of 8)	CpG	1429.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	4.87487004946827	4.87754416171488	4.29960172709543	4.94435728226869	4.70928094429157	5.1031200205388	0.445252629549298	0.326494721039334	0.71871363873492
Merged-chr18-5990087-4	chr18	5989599	5990599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145999.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	5.63909831367187	6.04751462615184	5.86934946566736	5.74615019805269	5.83575319898427	5.36003698251021	-0.337564383137363	0.328182273943213	0.720359571865224
Merged-chr4-136140492-4	chr4	136140010	136141010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.14880356388904	8.16404410184621	7.62781971729614	8.00224544858908	8.20500076879849	7.66464467404891	-0.0381977261827448	0.888251092572757	0.97401529899353
Merged-chr4-145025336-1	chr4	145024836	145025836	+	750.0	f0_balb.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	132199.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.40469244100429	4.34478481697811	4.60668045750717	3.8201751742976	3.70594956183291	4.04438253742672	-1.75519199148818	0.000513525788320633	0.0107038531326819
Merged-chr4-150212659-4	chr4	150212191	150213191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B1|LTR|ERVK	-11556.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	7.11444002559998	7.22705947823667	7.09274713425108	7.28053278623702	7.56036058904275	7.07078058059307	0.272576361184115	0.288210319968571	0.685555138616531
Merged-chr2-73892819-4	chr2	73892290	73893290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284376)	promoter-TSS (NM_001284376)	-151.0	NM_001284370	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	6.3597788491304	6.61276761153354	6.34881229727747	6.47597429545046	6.43630197893325	6.40870922366277	-0.0181906641766806	0.94672971304993	0.988007649185823
Merged-chr7-99183964-4	chr7	99183488	99184488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1275.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	6.15331479709862	6.11155440046907	5.90876566982939	5.78287491098851	5.53038017639553	5.50459478451305	-0.81317073959555	0.00960685688568622	0.0978178350151957
Merged-chr5-24686400-4	chr5	24685891	24686891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	576.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	8.60263880251765	8.67925435328956	8.420604371843	8.64291445972406	8.91198243745601	8.42316408222733	0.147015970107088	0.526523582997261	0.849517069783573
Merged-chr4-132333830-2	chr4	132333330	132334330	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 9 of 9)	PB1D9|SINE|Alu	-4292.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	4.19281328769901	3.85217966191811	4.28925082311534	5.07794523598615	5.12364159973301	4.7918674928243	2.25333035382242	1.08971605827626e-06	5.82357699274573e-05
Merged-chr5-65765103-4	chr5	65764603	65765603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	intron (NM_001024917, intron 1 of 19)	1582.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	6.66015280752445	6.89863750724894	6.57191295513263	6.39240756160315	6.51611837886388	6.48905165592261	-0.409874460382331	0.127144545427666	0.476530036302204
Merged-chr3-105862014-5	chr3	105861532	105862532	+	992.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8826.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	5.74640939005356	5.67743871975456	5.73858711798262	5.68692759441309	5.65835006194526	5.87382405683989	0.0274241911615704	0.929582827501864	0.984182996007117
Merged-chr16-94605772-2	chr16	94605272	94606272	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-5647.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.39371010142939	3.20139646987705	3.25517811966152	3.2817269969171	3.084785055591	3.38256749365998	-0.157736330157784	0.803005664924126	0.953422605427866
Merged-chr7-100862733-4	chr7	100862234	100863234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	679.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	7.10115197424991	7.02356112127427	6.62957008620387	7.09607995208781	7.10327754424947	7.02841555756185	0.200534791865614	0.444660986763279	0.804462724072661
Merged-chr9-53610388-4	chr9	53609885	53610885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144784)	promoter-TSS (NM_144784)	-35.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	6.22996713771664	6.29269878526249	6.12788191632568	6.12048749304327	6.21149978860361	6.00580250493467	-0.169381657231951	0.550974020891775	0.860915014090791
Merged-chr5-30652390-3	chr5	30651893	30652893	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	RMER17C|LTR|ERVK	4454.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	6.86340159431671	7.25400617876287	6.84295461287291	6.45016602657737	6.20392465073492	5.89126256407811	-1.26353712457252	3.98449297480418e-05	0.00130374239656904
Merged-chr4-154906322-3	chr4	154905818	154906818	+	889.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-7275.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	3.18075383346918	3.38833588527187	3.28666609896462	3.5201937971807	3.240189093625	3.67739528413465	0.746162949990906	0.234334064888585	0.630452522567377
Merged-chr19-12794840-4	chr19	12794329	12795329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 1 of 10)	CpG	1294.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	8.32191121701486	8.16751708388422	7.94904294979445	8.21199715768691	8.11018967647456	8.01236835714547	-0.0633361358324557	0.778335901696055	0.945439632982223
Merged-chr15-80706835-3	chr15	80706335	80707335	+	713.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4478.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.2892626963112	4.29669878251333	4.12690296362979	4.26257834176056	4.32950500277042	4.04504860581193	-0.0492351225411959	0.916865268818741	0.981431795618389
Merged-chr16-20358061-4	chr16	20357566	20358566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 24 of 29)	intron (NM_013790, intron 24 of 29)	-32662.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	6.11590282193306	5.8168831061969	5.76982309750915	5.92601076786549	5.70595073646822	5.11963267075568	-0.493908817131043	0.192515634465467	0.57958355678666
Merged-chr15-9135206-2	chr15	9134706	9135706	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	5248.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	3.98357893327922	3.95546111211767	4.27603843927785	3.8439151013044	4.19860002842917	4.07772641845399	-0.0514220931358277	0.919676702980325	0.982077636922415
Merged-chr10-8870567-4	chr10	8870074	8871074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	15496.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.10327182844554	8.08039593059374	7.81127035798793	7.61304728336447	7.82853880904376	7.63397728876548	-0.443688120054224	0.0531033227987244	0.295362385256434
Merged-chr17-46645754-2	chr17	46645262	46646262	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	318.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	7.25215709221568	7.35962593720692	7.0176537340662	7.25490074135061	7.26376584095607	6.60855787133203	-0.200088037096272	0.49398081032887	0.831788273897921
Merged-chr2-25663519-1	chr2	25663019	25664019	+	842.6666869999999	f0_balb.idr	Intergenic	Intergenic	5567.0	NM_001042630	13863.0	Mm.12867	NM_007947	ENSMUSG00000026937	Lcn5	E-RABP|Erabp|MEP10	lipocalin 5	protein-coding	3.30090358577162	3.24671460772245	3.39111307795158	3.66990981733142	3.36889940716032	3.22758316188884	0.491112905237352	0.429743851759709	0.795863007201232
Merged-chr12-75529593-4	chr12	75529092	75530092	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	66608.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	4.36822343390487	4.31645043186281	4.19653995540722	4.2833325524834	4.20974727109561	4.16963408285001	-0.210280242987081	0.645065638768526	0.900402236225432
Merged-chr2-25210942-2	chr2	25210442	25211442	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001310157, exon 1 of 12)	5' UTR (NM_001310157, exon 1 of 12)	547.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	5.29249197372535	5.63645058434147	5.94450804990782	5.55031516101814	5.63237079108755	5.47684648307915	-0.152079885753746	0.670351195507707	0.910029595108128
Merged-chr4-141803475-2	chr4	141802975	141803975	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277932, intron 2 of 7)	intron (NM_001277932, intron 2 of 7)	9863.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	2.79697753563929	2.545153345164	2.76103557800609	2.53024072243041	2.49903026966035	2.45230647920637	-1.22092284593254	0.127476101216518	1
Merged-chr4-132620123-3	chr4	132619628	132620628	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18918.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.71976373820805	4.00373529959772	4.03807824679751	4.00833464955444	4.34801234257418	4.05902717351747	0.674562144693736	0.190212671326136	0.576415469287827
Merged-chr4-43470496-4	chr4	43469982	43470982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	13227.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	6.80095662156128	6.72934514531195	6.67443515314603	6.52630264138091	6.7454376619011	6.85477313559142	-0.0409308572903812	0.875200504058519	0.970943409587731
Merged-chr15-76349391-2	chr15	76348891	76349891	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025340, intron 2 of 8)	URR1B|DNA|hAT-Charlie	1719.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	3.76665405759533	3.69415215301671	3.71615223564991	3.56773032998562	3.50060618599509	3.68272568412018	-0.509090549111919	0.352446650979652	0.74015397846436
Merged-chr1-57837180-5	chr1	57836676	57837676	+	806.6309809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 3 of 13)	intron (NM_144882, intron 3 of 13)	-8395.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	6.10373470348739	6.2785221732371	6.15751707431643	5.74609033741154	5.27204319589491	5.39547896256253	-1.25254045616665	0.00014203724901929	0.00379654205473726
Merged-chr1-156620229-4	chr1	156619754	156620754	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	54085.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.3980566313847	4.28956117016755	4.01469857494231	4.28421919537939	3.91628985937125	4.36636115994347	-0.153886080515658	0.760083077025906	0.940599840467163
Merged-chr12-87237061-2	chr12	87236561	87237561	+	926.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027744, intron 2 of 7)	intron (NM_027744, intron 2 of 7)	1540.0	NM_027744	71275.0	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	2.33490958422614	2.57636728941575	2.55424181879969	2.56582650161939	2.20491554324161	2.29901820796317	-0.789467813150823	0.369206908501514	1
Merged-chr18-16252127-5	chr18	16251643	16252643	+	832.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-534097.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	3.2683408524501	3.58042019750586	3.6410621269653	3.53369460258409	3.53977660094866	3.75976837998598	0.381530662206694	0.518255413617747	0.845156513047069
Merged-chr3-96487994-6	chr3	96487507	96488507	+	776.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-35701.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	4.18144685084754	4.34978969302828	4.56703068314015	6.52039751470666	7.04476278537877	6.54259117603096	5.09289447653284	3.02749708355068e-28	1.09526946664385e-24
Merged-chr8-47989929-2	chr8	47989429	47990429	+	917.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	CpG	622.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	6.20896343058861	6.18348816792411	6.19401624720956	6.51566076361383	5.96101570673081	6.25433994440301	0.106581634254417	0.72741149598536	0.930190693178362
Merged-chr19-18591254-1	chr19	18590754	18591754	+	1000.0	f0_balb.idr	intron (NM_017375, intron 5 of 9)	MER20|DNA|hAT-Charlie	40559.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	2.86763256428981	3.04257072862348	3.32891325046617	2.75109742708534	2.74159510408369	3.34838015470304	-0.499871998521441	0.520829124499412	0.846742927870637
Merged-chr2-84488051-3	chr2	84487542	84488542	+	846.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-11267.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	2.53895110081647	2.9932996388333	2.75442862027467	2.94219976086672	2.99152619505453	3.07222450411268	1.07590984219322	0.168911353022039	0.545531802905646
Merged-chr6-108214328-2	chr6	108213828	108214828	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1232.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.9127768656959	3.67406043113407	3.69263177706356	4.06416115528361	3.80686326453633	3.87022678096549	0.471390821779873	0.375820540433754	0.758951282467405
Merged-chr13-23683047-2	chr13	23682481	23683481	+	832.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178189)	TTS (NM_178189)	978.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	5.99127763573234	6.26597077869047	5.69859196481954	5.99849072600304	6.45676020637179	5.84584814116636	0.212060870574503	0.545683865501373	0.85832255350923
Merged-chr15-95826999-2	chr15	95826499	95827499	+	965.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3073.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	6.84548204435719	6.85278650081983	6.30869725712137	7.31115175283925	7.49171594272027	6.94495967176651	0.868470837600005	0.00392960977965736	0.0512419637275865
Merged-chr9-96706153-2	chr9	96705653	96706653	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13292.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	6.40847431650188	6.76286306821775	6.21552653400218	6.08713487122134	6.19554141051879	5.66268212964005	-0.790517972020348	0.0174813655512881	0.147614112521979
Merged-chr7-16297808-2	chr7	16297371	16298371	+	600.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11076.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	3.50177457468646	3.55119018874175	3.55456716240599	3.81338950311667	3.91959668512265	3.57012522985404	0.853210915466291	0.127084206680887	0.476395344690209
Merged-chr9-104039954-4	chr9	104039472	104040472	+	965.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 24 of 26)	AT_rich|Low_complexity|Low_complexity	23149.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	6.39999410903184	6.65738977514073	6.36846029542609	6.49827689426995	6.57162952299141	6.15331803434886	-0.0897338402915785	0.757707766138081	0.939896954409241
Merged-chr13-41468868-2	chr13	41468369	41469369	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18491.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.39433565406247	5.54504500117582	5.82735454447121	5.40181885758743	5.11915342767693	5.84286158566675	-0.223325535358751	0.562363330852339	0.86571315867742
Merged-chr6-124805336-1	chr6	124804836	124805836	+	1000.0	f0_c57.idr	Intergenic	PB1D10|SINE|Alu	-3325.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	7.29781291536691	7.4415045863769	7.05833090325431	6.69579477133847	6.60139718230898	6.42096663069396	-1.07288562060419	4.67700342676834e-05	0.00149219363931956
Merged-chr16-33641984-4	chr16	33641491	33642491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 8 of 11)	intron (NM_001083902, intron 8 of 11)	-42475.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.87156921550073	5.06268011363356	4.48373777371937	4.80702382839543	4.87063870824506	4.50647194784733	-0.210632818619552	0.633602606762278	0.896059441151508
Merged-chr10-44588583-2	chr10	44588083	44589083	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-129835.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.43732215031562	4.30914235828084	4.71853358159431	4.39563910724261	4.16696027796645	4.59900080739422	-0.26012451701945	0.577008960699445	0.871910680139461
Merged-chr2-29649904-4	chr2	29649418	29650418	+	818.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	30198.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	6.36034390916464	6.44855315577787	5.78902054940156	6.21537541709257	6.30949507610618	6.28092420336899	0.0381988261958135	0.904387544359817	0.978131323042371
Merged-chr10-44635448-4	chr10	44635016	44636016	+	926.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176768.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.15217894126565	7.51976938973337	7.32886192800276	7.1548793678156	7.16244607365704	7.25059016816246	-0.233881422969719	0.339267147372357	0.729122178214163
Merged-chr8-33731826-4	chr8	33731302	33732302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167921)	promoter-TSS (NM_001167921)	-112.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	7.25489055596716	7.01992082707879	6.48113696918835	7.15643972844642	6.72967400692302	7.10507355952318	0.0575115157571483	0.853834950483352	0.965848698439582
Merged-chr9-44258464-4	chr9	44257966	44258966	+	946.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178420, intron 6 of 9)	CT-rich|Low_complexity|Low_complexity	-7002.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	4.75480584212066	4.55548634729536	4.98776453527156	4.46910384876204	4.35569673122993	4.54348169945539	-0.766572214425556	0.0765282954334241	0.364316766331941
Merged-chr5-125384666-4	chr5	125384172	125385172	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5345.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.2536001665719	4.02980363695906	4.48189743713158	4.60549651678962	4.74069072463477	4.42091778540671	0.88662530127984	0.054929977816117	0.301134114779514
Merged-chr2-79370826-4	chr2	79370324	79371324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	58164.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	4.50439302844298	4.35527121301904	4.59009284673255	4.39432164827565	4.85673825089156	4.8434487507093	0.567427385224323	0.198270232919254	0.586542096232989
Merged-chr16-23591835-4	chr16	23591305	23592305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18114.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	6.30780544145233	6.68910441451328	6.44279888513142	6.59157819300767	6.79523598582851	6.62591880388896	0.294078319366279	0.289302736072454	0.686908016425067
Merged-chr10-82697551-4	chr10	82697040	82698040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	5.24092777724851	5.37800257856179	5.54855075043093	6.06668094420088	5.84734466023132	5.63989577335379	0.89591877732087	0.00748421929359744	0.082026728000745
Merged-chr16-70314214-7	chr16	70313745	70314745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028803, exon 1 of 16)	exon (NM_028803, exon 1 of 16)	296.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	7.9584869424878	7.84561688667147	7.77438538446186	7.91242105918169	7.82978172819637	7.67884802450813	-0.0720974493583461	0.743904138863181	0.935814517574594
Merged-chr3-66985834-4	chr3	66985339	66986339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356273)	promoter-TSS (NM_001356273)	-128.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	6.04737246974807	5.57594040139489	5.97288998614164	6.35267569862404	5.90240439943331	5.96389412776701	0.36623561640374	0.276112320071882	0.673410731557322
Merged-chr7-45568302-4	chr7	45567794	45568794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025330)	TTS (NM_025330)	-1859.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	6.34017127381131	6.3405349548562	6.24871447935876	6.46060245643435	6.43404768083961	6.24647147627338	0.125578800802815	0.644792836821366	0.900291423062745
Merged-chr8-3647574-2	chr8	3647073	3648073	+	637.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6D|LTR|ERVK	-8197.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	2.60173729500207	2.69461800376444	2.9168179737809	2.62037449474348	2.55339230088676	2.87447900840839	-0.294770593468852	0.701138247648071	0.921164588055017
Merged-chr8-84067313-4	chr8	84066808	84067808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	CpG	472.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	8.18749672815854	7.75035471206068	7.13112447451355	7.78556424372687	7.50585394376593	7.43640180003353	-0.266147665482621	0.403674043358561	0.778948248020816
Merged-chr6-114457539-4	chr6	114457030	114458030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-992.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	6.76697218688815	6.60335910808283	6.73973388165583	6.62771494072628	6.82276845029935	6.81336917235651	0.0862004902818901	0.736598724280178	0.933215757921375
Merged-chr15-74970587-4	chr15	74970092	74971092	+	891.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12838.0	NM_001358005	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	4.68272625264328	4.78616416526331	5.11040800141098	5.3421248703889	5.23055124233509	5.38828095944353	0.969543135131254	0.0104723333662548	0.103735942230873
Merged-chr13-30660338-4	chr13	30659814	30660814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 1 of 7)	intron (NM_134068, intron 1 of 7)	255.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	8.30087301255458	7.98330769143285	7.96497554399359	8.33213091667488	8.24017794772798	7.97430667715837	0.139768214721605	0.55440314220526	0.862789695636847
Merged-chr10-93488636-4	chr10	93488139	93489139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-129.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	5.55919280333124	5.70103372770735	5.46172838784887	4.4229439586857	4.1500352219699	4.57331646325188	-2.77048164462176	2.96885683978057e-11	4.39559857516836e-09
Merged-chr1-180195327-3	chr1	180194844	180195844	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	676.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	4.50232181878244	4.3603083652849	4.08063722257148	4.39704529459087	4.26869086007655	4.20050126952049	-0.114362052749984	0.808486804115261	0.954683711776353
Merged-chr5-107988813-1	chr5	107988313	107989313	+	542.0	f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-1736.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	2.44919106607937	2.31310899292719	2.33513953273372	2.40500896830107	2.30408473692847	2.53814102954052	0.294015610515047	0.721828039869034	1
Merged-chr17-31015126-2	chr17	31014626	31015626	+	878.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42568.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	2.25547606999604	2.26370266543048	2.38663236355182	2.43706320077671	2.3731488820232	2.52416598271939	0.937045994556626	0.256907241938608	1
Merged-chr15-97826477-2	chr15	97825977	97826977	+	632.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	5290.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	2.73073830847911	2.59257172608396	2.7817694623999	2.64193252495503	2.35925549634336	2.60852020559635	-0.944274498194349	0.240127979488303	1
Merged-chr3-87363887-3	chr3	87363359	87364359	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	B1_Mm|SINE|Alu	5978.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.32896573332905	5.23428879147976	5.43778280847638	5.82259593079076	6.09179534169132	5.9238993838575	1.16348561201471	0.000296886249243784	0.00690615348814001
Merged-chr12-8511207-4	chr12	8510723	8511723	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-11214.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	5.54209899819047	5.45452320257886	5.45336090699142	6.41038168458583	6.93363986907527	6.30631643845085	1.90380795306137	6.84231718304366e-09	6.46237829928146e-07
Merged-chr5-123891183-4	chr5	123890652	123891652	+	967.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11132.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	5.36200655439416	4.80049260853053	4.54490102200777	4.91794808521891	4.719450843943	4.42150833061776	-0.558770962626101	0.243199923425934	0.640453164779192
Merged-chr5-103706199-4	chr5	103705712	103706712	+	860.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47950.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	1.95641542299647	2.00587762799028	1.90102902881279	2.12397606803956	2.14176083348461	2.24953302907486	1.69491834750541	0.0792451164325653	1
Merged-chr6-70872279-4	chr6	70871788	70872788	+	985.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27773.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	6.31945377295176	6.65761244574628	6.15875811556493	5.98282804708367	6.29199364598957	5.71048986265886	-0.618823350783014	0.064310565651806	0.330460911922156
Merged-chr1-156448276-1	chr1	156447776	156448776	+	556.0	f1_balb.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	26052.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	3.95869963859966	4.14313421867289	4.63066565938523	4.07713907574797	3.89588590076385	4.43861698452053	-0.321989064073442	0.551594587305484	0.861318565888767
Merged-chr9-72530437-4	chr9	72529924	72530924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045735, intron 1 of 2)	intron (NR_045735, intron 1 of 2)	1434.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	4.07090863120877	3.83467331035581	3.9759708704994	4.3167656090004	3.97258937554026	3.89131378452846	0.330901443897414	0.521079655567848	0.846922225237145
Merged-chr14-54714289-4	chr14	54713782	54714782	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2108.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.61427107598419	4.10046550656144	4.05237313462413	4.03318684302769	4.05721898548884	3.85605229159445	-0.840471912493826	0.110147371792561	0.443467484981632
Merged-chr4-14864750-4	chr4	14864254	14865254	+	972.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	535.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	7.41818002893373	7.63758211786989	7.2782294203638	7.46810046343714	7.44560796452112	7.17574960316193	-0.123057789268475	0.619862398044023	0.889979882381751
Merged-chr3-159840996-3	chr3	159840471	159841471	+	691.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	1321.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	4.28851867095402	4.23895120636727	4.17522523951479	4.19001571745458	4.06456480985157	3.99835111562619	-0.418491166642546	0.375302786874838	0.758646622209238
Merged-chr16-73473772-4	chr16	73473270	73474270	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	810621.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	3.54937436160191	3.52429849074578	3.50666561068255	3.28623220565092	3.31338151505477	3.10722602133041	-1.10591159960283	0.0759137698618535	0.362670549616186
Merged-chr4-53218901-3	chr4	53218409	53219409	+	953.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27287.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	6.79421393771187	6.70202732442166	6.29192247925004	6.01236324052895	5.99059975792134	5.7745837909299	-1.13924878530347	0.000178961855661578	0.00457201660604501
Merged-chr5-96532120-4	chr5	96531601	96532601	+	597.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175473, intron 3 of 73)	L2a|LINE|L2	158146.0	NM_175473	231470.0	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	2.01423433704696	2.07006175150101	2.00611432685511	2.40568794637632	2.24332210704786	2.35788259010486	2.37685908793435	0.0150382528997048	1
Merged-chr10-98780289-4	chr10	98779791	98780791	+	757.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134351.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.53884627302135	5.25651480570642	5.52739459477935	5.46250372427467	5.62843455672594	5.72199206415165	0.309699418719933	0.357694482076554	0.744246280500086
Merged-chr2-180025440-3	chr2	180024923	180025923	+	857.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177727, intron 1 of 8)	CpG	436.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	4.94673776709642	4.46466604787637	5.01642197712225	4.96576484123745	4.35793265249712	4.80121787366243	-0.222917954096236	0.632527935438617	0.895571551612667
Merged-chr2-102700937-4	chr2	102700429	102701429	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-5509.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	5.42649780756535	5.45873440515616	5.28804841031204	5.08044370275807	5.07899411844148	4.75938398735831	-0.82634171317784	0.0256639887531777	0.189885219293474
Merged-chr11-69922465-2	chr11	69921965	69922965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166593)	promoter-TSS (NM_001166593)	-507.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	6.9042796286689	6.96343588653506	7.13008225204264	7.08696630830301	7.61994746144005	7.21214273932608	0.508161556137329	0.0595235986667983	0.315843040992919
Merged-chr19-6979228-1	chr19	6978728	6979728	+	586.0	f0_balb.idr	intron (NM_008020, intron 1 of 5)	intron (NM_008020, intron 1 of 5)	164.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	5.82396453887529	5.58015002949032	5.96764007428244	5.85991457171435	6.04802980834453	5.88871958734245	0.266024559840017	0.397884218933223	0.774623503151706
Merged-chr9-103345745-4	chr9	103345255	103346255	+	946.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176979, exon 25 of 28)	exon (NM_176979, exon 25 of 28)	19224.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	3.56267982889482	3.83943766225081	4.07389840816965	3.88249898400909	4.05442684665653	4.26931853795762	0.723148565035136	0.18429442697692	0.567896082682157
Merged-chr9-66918808-4	chr9	66918298	66919298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	907.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.46206385530443	7.43356679994915	7.54307224231022	7.27177084518375	7.60937853542218	7.55195203626372	0.014700523133151	0.95041627133553	0.988433104826972
Merged-chr4-55623580-4	chr4	55623079	55624079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91104.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.86815367800859	5.80405991479785	5.95922996790232	5.65125751418467	5.91606159503682	6.14739455062336	0.0695151692658903	0.826660378593872	0.959234071261769
Merged-chr16-49876315-4	chr16	49875807	49876807	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 3 of 9)	intron (NM_010581, intron 3 of 9)	20653.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.85223520697769	4.32646764387492	4.94801127384121	4.79363713994725	4.4710710666709	4.80268955504664	-0.0894337295518132	0.845017819498719	0.963760118842549
Merged-chr8-123950321-3	chr8	123949843	123950843	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	5.28640964876013	5.16242628601511	5.79856543135096	5.68477359869543	5.38259941591027	5.74134816888082	0.329659835839248	0.381290274619635	0.763080052613635
Merged-chr12-30911605-4	chr12	30911055	30912055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013709)	promoter-TSS (NM_013709)	57.0	NM_021330	11431.0	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	5.65989355572904	6.27937815907806	5.82077860276785	6.12287069350903	6.14543791894178	6.02970347957075	0.249410034866269	0.4519421759662	0.809286173636239
Merged-chr4-62525400-4	chr4	62524851	62525851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177607)	promoter-TSS (NM_177607)	-18.0	NM_001356420	214106.0	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	5.07034434444657	5.44360996150938	5.37233223729049	5.70547765460268	5.4938402421587	5.27593607428215	0.398569357918016	0.271043930417688	0.668316412480627
Merged-chr7-132813811-4	chr7	132813277	132814277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	-581.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	7.39523731417952	7.34968770937108	7.15010233358535	7.11017130333915	7.07487047461597	6.96705119025393	-0.379868903183149	0.112608832129171	0.448338447691312
Merged-chr10-43842027-4	chr10	43841518	43842518	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	16111.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	5.92705167346277	6.0149382415319	6.24956362338556	6.00959334236067	5.89750877392136	6.10825840882034	-0.105090932110417	0.725760484620782	0.929707128236285
Merged-chr17-65662833-4	chr17	65662348	65663348	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-20644.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	4.84872758800876	5.09070619818334	5.31841563400067	4.99701671355121	4.7717553960937	4.85585126299228	-0.464637737181996	0.24061979900393	0.637687679146298
Merged-chr13-76024842-4	chr13	76024319	76025319	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6107.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	2.64815224328592	2.44234147708634	2.54663823351813	2.74146261146081	2.68448898355366	2.7482165774728	0.986744302535979	0.200492628691073	1
Merged-chr19-9135652-4	chr19	9135150	9136150	+	988.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025610)	promoter-TSS (NM_025610)	-84.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	4.96519849476295	5.09766532511195	4.9403034666091	4.1183715759924	4.34377772221881	4.31143583159281	-1.80634821526796	3.42421857024112e-05	0.00115213254667458
Merged-chr10-117746409-4	chr10	117745919	117746919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-61.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	5.77745975920158	5.81488854673732	6.140528863595	6.31478062351363	6.34419230728132	6.4816492328265	0.798801555183919	0.00670271243320114	0.0757256342351392
Merged-chr8-72297166-4	chr8	72296675	72297675	+	961.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21887.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.79482599000598	6.60566379553739	6.94082433587219	6.63809367158551	7.01717352362783	7.07601743249891	0.220706459118117	0.423328664114581	0.791931731460825
Merged-chr1-131062928-1	chr1	131062428	131063428	+	550.0	f1_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	34915.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.33701233947121	3.25102488841787	3.66620950968644	3.29364016238719	3.20898245792183	3.26482798879831	-0.659952310946548	0.293268650006444	0.690221391260893
Merged-chr18-62088133-4	chr18	62087655	62088655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91826.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.35750566757106	5.16745762476773	5.35036440285994	5.11169583880943	5.14259147023056	5.32318256610813	-0.20772810190256	0.556458814436406	0.863603167403937
Merged-chr8-91070730-4	chr8	91070215	91071215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	658.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	8.09577230235345	8.5984768513298	8.24675731685006	8.16820394984156	8.38974056358264	8.23863530425545	-0.0898128912984259	0.708229936731138	0.923673927516058
Merged-chr15-31474093-4	chr15	31473589	31474589	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 20 of 25)	intron (NM_172606, intron 20 of 25)	-20400.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	5.36863293961957	5.5684611371144	5.60198744978347	5.8001104222736	6.0123645811354	6.0084321839594	0.786044321930347	0.0130021653441834	0.120907931823738
Merged-chr6-17647635-6	chr6	17647222	17648222	+	778.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	L1MD1|LINE|L1	10712.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.31563323930864	5.08367215558595	5.27267856097874	5.14082113182583	5.23603004011131	5.20851450027235	-0.0568642787446196	0.872479840353302	0.970261003150518
Merged-chr10-50593942-2	chr10	50593442	50594442	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 1 of 41)	intron (NM_198007, intron 1 of 41)	1273.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	3.211346734082	3.50658075777527	3.48340303866323	3.39486735305616	3.57794554787167	3.32965770356469	0.146252077978766	0.811509636555196	0.955304895434479
Merged-chr4-56070236-4	chr4	56069744	56070744	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-537769.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.32751562706228	4.24000276680894	4.24451440143051	3.97312124985117	4.03057913882484	3.98010080891428	-0.792221965483081	0.0956733080762066	0.412391981116168
Merged-chr12-32952789-7	chr12	32952365	32953365	+	869.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	924.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	5.33114159965856	5.5028715076118	5.13401655130813	5.2720615780292	5.35720749667541	5.69962224420296	0.204602236614814	0.573936147396894	0.870428851774368
Merged-chr10-85185330-4	chr10	85184740	85185740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-186.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	8.67020614817077	8.8936812869987	8.1465249539995	8.65694242020002	8.66458116410693	8.14370080906964	-0.135643999421008	0.630954607591079	0.894950326243773
Merged-chr4-55630447-3	chr4	55629942	55630942	+	922.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97967.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.81719430503351	4.70121381025109	5.08232291086811	4.52626105686206	4.70374608894739	5.08286950254242	-0.194294909908054	0.650661884788452	0.90265185343381
Merged-chr16-36770338-3	chr16	36769831	36770831	+	892.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021301, intron 7 of 21)	IAPLTR1_Mm|LTR|ERVK	14631.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	3.16412152674782	3.27357545421727	3.26966016600657	3.79674509457621	3.57429846919991	4.8215781154861	3.16418507664294	1.35741083187874e-05	0.00052169718475273
Merged-chr14-122645193-2	chr14	122644693	122645693	+	999.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	RLTR51A_Mm|LTR|ERVK?	110865.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	5.26907131322519	5.07233028825779	5.14716375016709	5.69529706118628	5.48780019219014	5.37741463577152	0.717189919681522	0.0396404057691279	0.247497477544653
Merged-chr4-12498643-3	chr4	12498150	12499150	+	803.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-326635.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.75867649245797	5.07053561097267	4.7648525503806	4.98954741173559	4.55124871359952	4.71105240099308	-0.271656298890868	0.519823278803666	0.846048097455962
Merged-chr17-24162152-3	chr17	24161653	24162653	+	904.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	1580.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	4.37999469144358	4.50975389667304	4.57794285619822	4.01906005177258	3.77752425225517	4.36571040505097	-1.17343431913767	0.0196337384434662	0.159446038298256
Merged-chr17-6654873-1	chr17	6654373	6655373	+	624.0	f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	intron (NM_001166630, intron 1 of 4).2	958.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	7.95804939340581	8.44427805500777	8.02257089853495	7.82800663688599	8.29669549637843	7.78833229018739	-0.231494431892684	0.392649420138698	0.771214636708298
Merged-chr11-69072881-5	chr11	69072209	69073209	+	953.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-717.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	5.78104857270918	5.66878292233462	5.42971412463846	5.58254704425805	5.91593249650719	5.33055711296018	0.0135767577735479	0.96986935061831	0.993247105656042
Merged-chr1-153498290-2	chr1	153497790	153498790	+	703.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10630.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	4.80726659788367	4.59742034644348	4.97380104154131	5.18479896546179	5.4191351145313	4.85068118808369	0.845350286920915	0.0386766206840817	0.24385327833523
Merged-chr8-13645127-4	chr8	13644618	13645618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	L1MB8|LINE|L1	32469.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.99733012385099	6.14085913726694	6.11091207076386	5.9190277813461	6.03664894806787	5.99367298913816	-0.16868357098482	0.559314876414306	0.864901733108576
Merged-chr17-81616624-4	chr17	81616122	81617122	+	914.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	121765.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.76317236970475	4.72763756415569	4.68986877879301	4.23556518044487	4.54427560391587	5.1560305961948	-0.0754207943138894	0.876031103855388	0.971162730906517
Merged-chr13-67728216-1	chr13	67727716	67728716	+	562.0	f0_c57.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	957.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	4.55806734208312	4.99183745713554	5.03882837404687	5.50680660665573	5.16786051723487	4.88113758682639	0.7167175868227	0.0906283949930771	0.400542172974131
Merged-chr14-25494174-2	chr14	25493674	25494674	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34989.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.67004939939972	4.43022810749736	4.3612730471935	4.31239081846765	3.94699954602165	4.09653612041492	-1.00737445422093	0.0352185848982769	0.230292181706548
Merged-chr8-83235580-1	chr8	83235080	83236080	+	771.0	f0_balb.idr	intron (NM_001111304, intron 5 of 20)	intron (NM_001111304, intron 5 of 20)	-54768.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	3.38116277427659	3.38719811459264	3.55271187505918	3.0401350827909	2.85264882136018	3.25192102277806	-1.72095254323291	0.0122219095950429	0.115708346067167
Merged-chr7-64064991-3	chr7	64064472	64065472	+	959.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-88863.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	2.62127695354365	2.86014549477504	2.77682380659255	2.60311358393037	2.64918427016193	2.59849347780445	-0.758010791020588	0.318707173191486	1
Merged-chr3-22010108-4	chr3	22009611	22010611	+	937.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66541.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.65346999910464	3.58803391922681	3.82435416836972	3.65500502712725	3.65848811541053	3.6400509754303	-0.115155320612762	0.832764845164788	0.960757500748132
Merged-chr2-22811639-4	chr2	22811126	22812126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	37299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.74920576938935	5.81765602687639	5.70492379554939	5.50887530351925	5.44979086487743	5.74098219695003	-0.370061048950966	0.247022390266162	0.644045601901006
Merged-chr17-65605110-4	chr17	65604579	65605579	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Tigger7|DNA|TcMar-Tigger	8476.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	5.36613873263579	5.52393270981006	5.73518950543776	5.87851103174378	6.0385043800248	5.48998451006473	0.547215436335128	0.115470718828105	0.45366277255564
Merged-chr2-26973498-2	chr2	26972998	26973998	+	986.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290463)	promoter-TSS (NM_001290463)	82.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	5.31380154375355	4.72904831537137	4.63332367275935	5.06187744600516	5.04912407154708	4.82970589112033	0.103535234892138	0.812310849856762	0.955553570095744
Merged-chr5-3247495-4	chr5	3246977	3247977	+	893.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96416.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.73520153567109	2.92057000265866	2.74101041721698	2.77902711983168	2.55491595635696	2.99422737587386	-0.105339967961161	0.890385352149843	0.974513293810689
Merged-chr5-41740023-4	chr5	41739598	41740598	+	847.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24122.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	3.84758842940447	4.04987610818313	4.01540714311416	4.20719959772187	4.5253361020705	4.18292541650438	0.989893702829245	0.0438157416505678	0.263229797388164
Merged-chr9-46273107-4	chr9	46272617	46273617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011752)	promoter-TSS (NM_011752)	53.0	NM_011752	22687.0	Mm.17519	NM_011752	ENSMUSG00000032078	Zpr1	AI303781|Zfp259|Znf259	ZPR1 zinc finger	protein-coding	7.24909855590465	7.30565836701422	7.32826614634167	7.34569912516007	7.30244945841453	7.02765575100858	-0.0787804686146637	0.74253238168249	0.935280569407155
Merged-chr4-120950386-2	chr4	120949886	120950886	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005788, intron 1 of 5)	MIRb|SINE|MIR	1315.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	5.67966092784664	6.14444219126035	6.01626065120709	5.85755278617213	5.7625629767768	6.33360488476424	0.0630405510252181	0.854899808045789	0.966038421653227
Merged-chr10-26773186-4	chr10	26772662	26773662	+	985.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	650.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	6.9452376810204	7.26616292598982	6.69006073923334	6.55205312465123	6.74077596204558	6.37904899872533	-0.658112198107539	0.0245002654898686	0.184527543924581
Merged-chr2-26409219-4	chr2	26408712	26409712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290437)	promoter-TSS (NM_001290437)	7.0	NM_033134	64436.0	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	6.48790084200584	6.79040819991472	6.29873349464731	6.36248722273856	6.38795310002165	6.16521299749255	-0.384497482039838	0.189981694289884	0.576156169350608
Merged-chr13-37348334-4	chr13	37347828	37348828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2983.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.63683663357831	6.80086230494652	6.63273140614232	6.99787653055662	7.32501021838579	7.10219564540432	0.703681448712126	0.00618652936976908	0.0713173643391169
Merged-chr5-31488094-4	chr5	31487590	31488590	+	946.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026296, exon 2 of 2)	exon (NM_026296, exon 2 of 2)	2231.0	NM_026296	67656.0	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	3.72472213924611	3.65976848702611	4.09156544459176	3.85526289647838	3.78942418574516	4.32246523936078	0.521790923296311	0.352032704610664	0.739676707286285
Merged-chr13-45968350-4	chr13	45967871	45968871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3380.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.78268520237925	5.4783477011721	5.65863122641081	5.78174884606381	5.53078153182052	5.4942903843242	-0.0646127920373372	0.845942093676542	0.963945177091542
Merged-chr5-139298880-2	chr5	139298380	139299380	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	26584.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	2.63520189284852	2.62895040449829	2.96640687458003	2.80151492251587	2.52046969910044	2.6821997363329	-0.406757770754813	0.599749429572153	0.881197893564797
Merged-chr11-121801370-4	chr11	121800883	121801883	+	957.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-28835.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	5.1255314637953	4.76623692223853	5.15015275753109	4.853592245157	4.79525280986337	4.94772404633945	-0.347648483718643	0.378136635918562	0.760495811314425
Merged-chr16-30974734-4	chr16	30974237	30975237	+	969.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	L1MA9|LINE|L1	106695.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.17396395624056	6.32258663062544	6.42856439729991	6.08230574043464	6.18421349954379	6.26440004518576	-0.219098627362929	0.437239174392169	0.799848369002863
Merged-chr4-126230093-2	chr4	126229572	126230572	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	26247.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	3.93734439303771	3.91809715653271	4.46006065397395	4.153781569335	4.11134056467524	4.32701360154058	0.219468377607399	0.668142618781175	0.908976375106763
Merged-chr5-124024987-1	chr5	124024487	124025487	+	1000.0	f0_balb.idr	intron (NM_177876, intron 1 of 3)	L2b|LINE|L2	7273.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.27351223393706	7.1698330473265	7.15117045397419	7.04030638204603	7.03870129393051	6.98691232770248	-0.267873992250318	0.253614747481257	0.650978681198768
Merged-chr7-126135113-4	chr7	126134593	126135593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-52682.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	6.59575702704295	6.59891229339957	6.27916314930736	6.40559010387295	6.43402726666438	6.47533365106366	-0.118441773628782	0.664698829576129	0.907719555092983
Merged-chr4-11191306-4	chr4	11190822	11191822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-29.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	4.19252530686154	3.68802013745603	3.52235058423694	4.25569742948372	4.34090553155121	4.20172509039844	1.22602552322893	0.0381223655501703	0.241621474497643
Merged-chr13-75823393-4	chr13	75822889	75823889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16496.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.48628301582077	5.48274753640771	5.65181719479805	5.12279521765163	5.22979401887308	5.47296615038948	-0.51348695055695	0.136540383606658	0.49364554591105
Merged-chr7-63931745-2	chr7	63931245	63932245	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7170.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.80464636021545	4.04490139407044	4.30707593136789	4.3908019122913	4.48238567484607	4.6879270078413	1.25093756566022	0.0105591455012646	0.104397026956894
Merged-chr6-108719027-4	chr6	108718535	108719535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58101.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.85048950490012	5.79707117514993	5.21211409063788	5.43745391842895	5.70033641174097	5.57012711546101	-0.161911808891782	0.656731403441437	0.904693205515276
Merged-chr2-6705056-3	chr2	6704533	6705533	+	899.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	16629.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	6.94815683360241	7.01694153975534	6.62852691315099	6.95146517286402	7.2819990460213	6.86760618707002	0.26197516941118	0.342227476691256	0.731283521951228
Merged-chr7-16924147-4	chr7	16923658	16924658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-126.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	8.07213612245432	8.20747239394929	7.96545401871096	8.00129126763545	7.98712484491893	7.55991910778551	-0.305515125723878	0.20468851470616	0.595338437555822
Merged-chr10-127582606-2	chr10	127582133	127583133	+	812.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 19 of 88)	intron (NM_008512, intron 19 of 88)	38515.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.4446839581092	3.00546479053962	3.84531665633165	3.52953929577341	3.13043825338841	3.9994310855745	0.40995439070648	0.720792081375235	0.928324696220711
Merged-chr2-154659493-6	chr2	154658903	154659903	+	743.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	2377.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	5.54917777506503	5.39735353776803	5.3944459358386	5.57585537629459	5.58121194133409	5.45789053184637	0.175830359598236	0.591493704777055	0.877668352213728
Merged-chr9-70832621-2	chr9	70832121	70833121	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102187.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.14325086251588	6.0056798907659	6.53043208513212	6.28130294028855	6.22904180539061	6.07444055842877	-0.0519539417828191	0.86559467147695	0.968641478520565
Merged-chr4-55652028-4	chr4	55651521	55652521	+	873.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119546.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.23857958549439	8.38338633607978	8.045167558638	7.79775989065657	8.05521235922668	7.84332160696917	-0.461460135394074	0.0437337728047559	0.262919887906997
Merged-chr16-58503622-3	chr16	58503131	58504131	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	MTD|LTR|ERVL-MaLR	19795.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.31702131966644	5.1337036762073	5.44584924604452	5.53351932444768	5.6330836392535	5.79603104579163	0.686800168331999	0.042807031433601	0.259404811851072
Merged-chr13-23518170-4	chr13	23517659	23518659	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-TCA_|tRNA|tRNA	-12885.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	6.1963199738534	6.31394536864547	5.95017116920914	6.51614521742993	6.83095812232071	6.29009380148896	0.662310916835203	0.0310915145049878	0.213471634535112
Merged-chr14-20371607-2	chr14	20371107	20372107	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	17303.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	4.47292920659806	4.69872289181075	4.788438852942	4.58426289337032	4.79646206266841	4.30273529134722	-0.153445200151168	0.732493098567975	0.931782229960786
Merged-chr1-125471578-4	chr1	125471171	125472171	+	948.699402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-35944.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.96289642171485	6.37343590763978	6.37795202394469	6.17040352117685	6.5777084408833	6.26338987728134	0.180641157695804	0.561009467158	0.865361577760505
Merged-chr13-97558577-2	chr13	97558077	97559077	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1423.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	4.60828452888487	4.89311898460993	5.19348360956229	4.61172520347545	4.90713308895938	4.93605000158898	-0.186437035922958	0.661757740549632	0.906495637422278
Merged-chr11-79368414-3	chr11	79367908	79368908	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 1 of 57)	MLT-int|LTR|ERVL-MaLR	28516.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	3.54791490595565	3.40088295553423	3.99404454810587	3.64050024718292	3.35829318786203	3.64000299202408	-0.398788666334785	0.51512424286403	0.84337265078831
Merged-chr17-24159080-4	chr17	24158581	24159581	+	949.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	4652.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	3.30591758577652	3.27836325812249	3.60711168970445	3.36455917189647	3.12982351357982	3.57719976897661	-0.141786800916698	0.823732476028986	0.958451755471188
Merged-chr16-20672713-4	chr16	20672228	20673228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	1.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	7.46305167193888	7.1570658590659	7.05814351119562	7.8353006664671	7.31910214108644	7.04654087665402	0.305661764830876	0.309793436442405	0.705462734304293
Merged-chr12-103435481-2	chr12	103434981	103435981	+	609.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_026790, exon 2 of 7)	exon (NM_026790, exon 2 of 7)	1292.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	4.61265619640975	4.64133310364516	5.07081891790362	4.93383230487367	5.14884720466857	5.03545414233043	0.593137264719969	0.142472537358283	0.503801228515429
Merged-chr6-83683094-3	chr6	83682554	83683554	+	923.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5197.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.76635703586907	5.04358908806763	5.16550078854734	4.98832438389864	4.86061719989483	4.96232591248048	-0.13064094332674	0.73655036148707	0.933170145541996
Merged-chr10-61143883-2	chr10	61143383	61144383	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	3801.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	6.06388318288471	6.17155313499605	5.92520548764008	5.92117732228932	5.96088851364468	5.75596262681804	-0.304912002436812	0.309192027058317	0.704802606494279
Merged-chr2-119173008-3	chr2	119172502	119173502	+	889.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177157)	TTS (NM_177157)	-1507.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	1.78230112968578	1.71770041841062	1.94105022830898	1.78209764243881	1.55233684840937	1.59928411009604	-1.65148028922177	0.1449110156639	1
Merged-chr6-148405867-3	chr6	148405365	148406365	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	38487.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	3.50030525308147	3.65996905541766	3.84799730243914	3.99089620520643	4.31226821385305	4.11107039163129	1.51213720880164	0.00476695960976051	0.0592689364181512
Merged-chr5-139438909-2	chr5	139438409	139439409	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	B1_Mur3|SINE|Alu	15730.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	3.26148812856236	3.0219768587065	3.57379388417659	3.11134944435572	3.28045608485585	3.3897992759164	-0.140370938594296	0.83341454194851	0.961070491919313
Merged-chr17-37538604-4	chr17	37538089	37539089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8632.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	5.50823282334	5.38041315139407	5.21777912258748	5.72823043617811	5.7373110154909	5.65196088927149	0.612849201564399	0.0626532190809452	0.325539371928505
Merged-chr8-79640749-2	chr8	79640249	79641249	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081164, intron 1 of 20)	intron (NM_001081164, intron 1 of 20)	1073.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	6.02542090014391	6.40517158165677	5.67649883205186	6.20515731742123	5.72507708294689	5.58944804276175	-0.360504968766465	0.332638754917379	0.723716858669256
Merged-chr11-120949467-2	chr11	120948967	120949967	+	773.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038654, intron 1 of 4)	CpG	400.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	4.17224170679548	4.02960926898255	3.94537195315792	4.30781349253173	3.97160263170863	3.79898855163273	-0.0232113472912798	0.964487437449445	0.991478598183903
Merged-chr5-135133996-2	chr5	135133496	135134496	+	693.166687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152880, exon 14 of 17)	non-coding (NR_152880, exon 14 of 17)	-15715.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	3.44722498645798	3.43724508390849	3.70566608433715	3.42001858306645	3.46937665719323	3.22928953560695	-0.545364079757289	0.370433498766116	0.754835402087431
Merged-chr14-20832344-2	chr14	20831965	20832965	+	938.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4197.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	4.35996168999969	4.81806994511456	4.32653259121338	4.44809565608495	4.61374196437369	4.57250273957007	0.0361449625636098	0.937004949572481	0.986037792257163
Merged-chr6-100211399-4	chr6	100210880	100211880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75978.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.63603941202423	5.68771104594488	5.50319218731056	5.70930876223686	5.4033245789217	5.24476476774636	-0.270764684163884	0.431281834624958	0.796796014376161
Merged-chr2-72261530-2	chr2	72261030	72262030	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24107.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.93250283064444	5.95813853512688	5.90080270532353	6.30668091202889	6.45784627988184	6.54682919158051	0.849868816096316	0.00258578102555921	0.0376342996504558
Merged-chr8-84981104-4	chr8	84980584	84981584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.74136178782518	8.6320684524629	8.42332969599074	8.6878809133639	8.97311092552515	8.39518092781175	0.145234917533021	0.551523357707342	0.861262369052689
Merged-chr11-116109670-4	chr11	116109180	116110180	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172570, exon 1 of 6)	exon (NM_172570, exon 1 of 6)	555.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	7.66493347300525	7.52040606159533	7.59908738890548	6.94482604752289	7.1173457837784	7.23170383865808	-0.735197911982663	0.00181085002903041	0.028618653222329
Merged-chr18-53250872-4	chr18	53250375	53251375	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	5213.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.19664807220379	8.26702393282577	7.60310376163957	8.03382008765166	8.32786129441415	8.02600620192497	0.108217884109445	0.686846213419521	0.916896884795873
Merged-chr7-110556351-3	chr7	110555859	110556859	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	58561.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	3.97702824257456	3.83575587208967	3.82261406596297	3.7934925485775	3.8818501301428	3.89234527642333	-0.0834108140043855	0.870614017616624	0.970084781962666
Merged-chr7-145289489-3	chr7	145288950	145289950	+	808.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5439.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.24838092122467	2.33651993145725	2.38858344178781	2.26925180550706	1.93847560718608	2.20131951314655	-1.32898306952807	0.175965690955386	1
Merged-chr15-51961555-2	chr15	51961055	51962055	+	662.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30205.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	3.60330627237874	3.79579473374382	3.77779944653893	3.7505592963942	3.78710064708989	4.12581830986199	0.521712382427366	0.335250897236179	0.725385451575238
Merged-chr14-55088532-2	chr14	55088032	55089032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	3516.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	5.04252490729285	5.04971490772936	4.725599078819	4.78015335630212	4.6264021651723	4.62440319082086	-0.631804771393481	0.116586380467283	0.455891702895891
Merged-chr14-60265146-4	chr14	60264624	60265624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144843)	promoter-TSS (NM_144843)	-81.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	7.07832693608944	7.10648624985588	7.13045452211636	6.93283395411727	6.81755497247512	7.04999269246012	-0.266234656444732	0.270758490939772	0.667811018322166
Merged-chr11-121709233-2	chr11	121708733	121709733	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	RMER4A|LTR|ERVK	6806.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.52388776741213	4.39305089571884	4.7156279994229	4.53957319213719	3.92074669487378	4.81535533779297	-0.183460254184567	0.724716073368292	0.929459725191008
Merged-chr4-136602224-4	chr4	136601775	136602775	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347221, exon 1 of 20)	exon (NM_001347221, exon 1 of 20)	448.0	NM_001356567	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	7.08644213536448	6.69473125526763	6.74240450370898	7.02081149120199	6.26690481707733	6.60352639484492	-0.294515459108945	0.356486226562777	0.743309425646156
Merged-chr15-81812510-2	chr15	81812010	81813010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017376, intron 1 of 3)	intron (NM_017376, intron 1 of 3)	1096.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	5.4415419759096	5.52739954821377	5.51467748116511	5.31930921167401	5.45699959388103	5.09383826440175	-0.352921259936764	0.309571693501651	0.705180723633523
Merged-chr15-6579414-4	chr15	6578886	6579886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	-461.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.43542892494282	7.70907877092145	7.46971844319004	7.46901467098771	7.71334427373528	7.6980673774574	0.122652653168555	0.604620832404194	0.88314896167691
Merged-chr8-46145067-2	chr8	46144567	46145567	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-18584.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	4.25602786837957	4.56514939639506	4.51010804744706	4.70946862493267	4.6942972593414	4.84723690953047	0.720005895553563	0.0909566020575829	0.401374466695341
Merged-chr8-85554962-3	chr8	85554464	85555464	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019794, intron 1 of 8)	CpG	307.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	8.55376181598368	8.83264014691011	8.34038908592831	8.72100142549506	8.62637506799797	8.53956299498992	0.0479383867435823	0.834183458491317	0.961273502395445
Merged-chr1-172514126-4	chr1	172513616	172514616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7014.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	6.77488813711882	6.25673259688542	6.09048738382671	7.38366100316454	7.50423700870248	7.16926781134525	1.4456639525731	2.66990274062638e-06	0.000128192306544743
Merged-chr6-54940644-2	chr6	54940144	54941144	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	RMER10A|LTR|ERVL	31017.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.00699939213234	5.13965128620058	5.5458659444942	5.20852342140591	5.42425813192633	5.47332364392305	0.269212929771449	0.472207394902825	0.8205191831757
Merged-chr2-3788570-3	chr2	3788032	3789032	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75074.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.18928982100753	3.321065433535	3.33612900829481	2.97870698646496	2.81901301226494	2.94250196686466	-1.75327793963421	0.0113526257223542	0.109994215414732
Merged-chr11-51615785-4	chr11	51615294	51616294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3979.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	7.14283662272589	7.54634729114348	7.15646080798101	7.26239560066588	7.43008195110023	7.23870748187698	0.0219809579197928	0.931572569264237	0.984929477721491
Merged-chr9-44604548-4	chr9	44604036	44605036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181324)	promoter-TSS (NM_181324)	-356.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	8.52603045653513	9.06970811341834	8.4444427355903	8.61869791150604	8.70213018447221	8.68854669127158	-0.0659525785144946	0.79148559144196	0.949748707968383
Merged-chr3-126613746-4	chr3	126613250	126614250	+	955.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	16799.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.43662578107739	6.36740798264355	6.34716517664945	6.58984781190645	6.52995803806502	6.3478891768511	0.183752650597287	0.493251364118069	0.831208279358962
Merged-chr13-41073450-2	chr13	41072950	41073950	+	895.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-2985.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	5.9708579211485	6.18243404761212	5.6404421136921	5.90132754058881	6.09733755643672	5.73266266719665	-0.0586921541836826	0.859830655344347	0.967435965660262
Merged-chr17-35870843-4	chr17	35870334	35871334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4219.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	6.44147020046958	6.48300986424584	7.08015426825754	6.80445512126926	6.71466072047685	7.17235967125701	0.332286494362945	0.289735988494454	0.687430963346381
Merged-chr8-27176983-4	chr8	27176475	27177475	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2329.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	3.26765831593282	2.77088664762078	3.03185484073881	3.16483309997361	3.03603711614288	3.10517352075822	0.263026553491135	0.711337750275766	0.924661173262022
Merged-chr1-174053225-4	chr1	174052742	174053742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2867.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	5.16011942931156	5.42096920450688	5.38907449614972	5.42592350573053	5.27849170073893	5.53725459213335	0.163240099603197	0.639013637004858	0.897856242956775
Merged-chr1-179488171-4	chr1	179487681	179488681	+	862.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	29860.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	3.30663826222983	3.48978142777901	3.19048957883226	3.2926512753625	3.34508328158391	3.38010107973435	-0.0104572697138031	0.986466579477251	0.997046485784555
Merged-chr1-119492420-4	chr1	119491930	119492930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	RLTR26B_MM|LTR|ERVK	12352.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	4.93791112651968	4.9341101290649	5.26738571703563	4.82400404914711	4.99683454478748	5.57042342443112	0.232885494408671	0.582256338092332	0.873654816299381
Merged-chr5-27791624-4	chr5	27791108	27792108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-58.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	7.79202626746235	7.73036480916459	7.66295057955676	8.11310549542885	7.86111589630299	7.72865730724708	0.261817606286263	0.255575917147761	0.652670439002883
Merged-chr12-4163541-2	chr12	4163041	4164041	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	29388.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.51153514705194	5.09921088329684	5.07995515184651	4.33178023842354	4.08048818509965	4.53994761901306	-1.46527502221518	0.00207335530669417	0.0317950144414686
Merged-chr15-78600842-2	chr15	78600342	78601342	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	3795.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.16425906368786	4.28614123796539	4.69626928009917	4.402166302119	4.12301903209929	4.72546676964577	0.0952269341605911	0.849047151683872	0.964523870208771
Merged-chr11-8623628-2	chr11	8623128	8624128	+	583.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	URR1A|DNA|hAT-Charlie	40907.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.74387993162202	4.44770757217219	4.27468442895064	4.34352837468176	4.09336160988019	3.92806650237017	-0.986280322336719	0.0472980174692361	0.275465348749226
Merged-chr2-128801003-2	chr2	128800522	128801522	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-17281.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.19775351743885	3.3180033618769	3.35477930714629	3.22061288226323	2.94482158136732	3.08177144120146	-0.888125281018305	0.175259375911888	0.555055842533262
Merged-chr13-60670088-3	chr13	60669602	60670602	+	976.611084	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	67891.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.61158524730625	6.92132689377258	6.79342422475836	6.49547386416715	6.54491680757033	6.47211379410927	-0.436412938369954	0.0987430974187958	0.419173289629262
Merged-chr3-95820333-2	chr3	95819835	95820835	+	933.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1382.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	6.51560085949226	6.72128756457199	6.46794505397301	6.53337551666925	6.65821632115498	6.64869296335403	0.0566005989168832	0.830512483476883	0.960308134590845
Merged-chr11-23769825-4	chr11	23769326	23770326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	1144.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	8.27556484825264	8.00789644882805	7.84894538340822	8.40831818250853	8.65221118374737	8.01113789729278	0.463399855049499	0.0790009509860759	0.371363828577448
Merged-chr4-88515821-4	chr4	88515332	88516332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6962.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	4.5246382729701	4.88051423796134	4.49079867038252	5.05927181293332	4.80524313896476	4.92491149099792	0.626548546646676	0.136576343757975	0.493740502092718
Merged-chr11-34025235-4	chr11	34024748	34025748	+	823.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-21680.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.76271875201971	4.90641402745802	4.84907270829121	4.71564303817181	5.08540693308389	4.98656824016414	0.226320366000145	0.566427703757752	0.867376103345635
Merged-chr15-68259729-4	chr15	68259251	68260251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-895.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.87968096117548	7.06684293168734	6.7591045567789	6.87304025827526	7.04579796546827	6.77007686557571	-0.00896641395341163	0.972465922040788	0.993868590220018
Merged-chr8-90841653-4	chr8	90841166	90842166	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12831.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.46054221756438	5.52742300368026	5.77443041832473	5.53934253797133	5.58712126200811	5.73766378009147	0.0650175583412597	0.842755431832266	0.963161613177542
Merged-chr13-40939760-2	chr13	40939260	40940260	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	22126.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.68037255177719	4.64093001507353	4.5640626705265	4.2296347550084	4.43381081136348	4.01399817867945	-0.964926602942483	0.0399085777701934	0.24859357232387
Merged-chr12-69199696-4	chr12	69199189	69200189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	-1260.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	5.91043559061007	5.986623068585	5.67982182425619	5.7469692461473	6.14359458216643	6.19125318788563	0.291280510661524	0.364991978672376	0.75019645162727
Merged-chr10-78149291-4	chr10	78148794	78149794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	20474.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	6.32207827898049	6.59960371617529	6.49892883657564	6.23527038486192	6.7553707493108	6.29152371489336	-0.0248545670371744	0.934907118074414	0.985727573165395
Merged-chr4-17393790-2	chr4	17393290	17394290	+	763.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-459103.0	NR_135158	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	2.09052052260568	2.15525702649518	2.26073735595803	2.04497820015141	1.89248343692817	2.07317568936517	-1.33605983999016	0.160823740626437	1
Merged-chr10-82958508-4	chr10	82958031	82959031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26966.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.67688749900095	4.56155144188687	4.34227454667859	4.10284125736633	4.03227886677584	4.32045749885464	-1.05165118885757	0.0235799910664952	0.180020542862734
Merged-chr19-56731062-2	chr19	56730562	56731562	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8690.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.0191630893281	4.01513953374675	4.16970312194521	4.30213828483477	4.2563665913346	4.14453809757901	0.49541530723464	0.291958074879282	0.689235268138963
Merged-chr16-23306573-2	chr16	23306073	23307073	+	825.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	16103.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.79687211210175	6.68014028161589	6.91606582799287	6.5444491221185	6.531442059956	6.79095705838169	-0.277619490320562	0.290995391344308	0.688773525714775
Merged-chr15-103486827-4	chr15	103486325	103487325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153505, exon 25 of 31)	exon (NM_153505, exon 25 of 31)	-16209.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	4.53665512463808	4.62736290787704	4.88456264883192	4.6085405745889	4.35793378944729	4.88048579628633	-0.149347987792506	0.736520225595923	0.933162099179542
Merged-chr8-46705413-2	chr8	46704913	46705913	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	34102.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	3.12652514192137	3.12235044532436	3.14037264058845	2.89660563883881	2.87462028176243	3.15526827625961	-0.715006323018591	0.290126081218044	0.687733205116261
Merged-chr4-34886710-4	chr4	34886194	34887194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3746.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	6.16820403670579	6.41298032855191	6.46380249775557	6.13694674527318	6.07499082542389	5.97371040799992	-0.47491851618562	0.099442829699789	0.420513237468112
Merged-chr8-69978553-2	chr8	69978053	69979053	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	MLTR11B|LTR|ERVK	-4170.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.48257461103532	3.42240791224087	3.43950426723727	3.53301063957241	3.6182561559939	3.51091802392964	0.401479600179483	0.480748807212301	0.82478653093858
Merged-chr10-77617480-2	chr10	77616980	77617980	+	937.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_125904, exon 5 of 5)	non-coding (NR_125904, exon 5 of 5)	3771.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	2.90129500166044	2.79190791067231	3.15695556701971	3.19640775252334	2.91654446460579	3.05721860045679	0.495281982460945	0.479896470130084	0.824391932626821
Merged-chr11-52000009-4	chr11	51999491	52000491	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	475.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	8.19420769599768	8.38703009422575	7.84054812567621	8.19046243169616	8.34741669048118	7.92188160706729	0.00521662628762863	0.983689027335298	0.996417452412872
Merged-chr8-69937665-2	chr8	69937148	69938148	+	891.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	-35090.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	3.44255313082674	3.30485443452258	3.47076579626326	3.33388138172616	3.25865633217874	3.20359764727391	-0.547855346017714	0.368875834612433	0.75369365598741
Merged-chr11-117987288-4	chr11	117986777	117987777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	CpG	420.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	8.37177890956195	8.43491906648058	8.07454536261035	8.1947215469397	8.10919921110097	8.0272526877906	-0.274309724967372	0.217709794198004	0.611656200779633
Merged-chr2-22933772-4	chr2	22933282	22934282	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019501, intron 9 of 10)	intron (NM_019501, intron 9 of 10)	38260.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	3.57308210968463	3.78603301461953	3.68944563985466	3.78943139845585	3.75591080167115	3.95788030238066	0.47364935470557	0.377529158330746	0.759972086763873
Merged-chr4-141149565-2	chr4	141149065	141150065	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	1643.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	4.68446506783427	4.43131767990227	4.29413870578425	4.62929361351592	4.93468371617417	4.31520317617746	0.42722503539367	0.36677641435186	0.751896619413869
Merged-chr2-118601431-3	chr2	118600921	118601921	+	766.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3210.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	5.42546344139198	5.40245555821548	5.23430565791756	6.56470362943445	6.73633121602866	6.40935795751932	2.11992351744451	1.00144693253467e-11	1.60651665981146e-09
Merged-chr6-42349120-4	chr6	42348624	42349624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	-704.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	7.65856936804798	7.63734138571864	7.58429398642594	7.42122271847264	7.64330987761644	7.5034291932895	-0.143684344012166	0.521886586597689	0.847336320662267
Merged-chr19-40626618-2	chr19	40626118	40627118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	14252.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.07482874425539	5.95182083732021	5.88300908230944	5.12463876968501	5.62865306640413	5.42712518957757	-1.01558431445569	0.00319689746437899	0.0442313675118135
Merged-chr18-34933357-2	chr18	34932857	34933857	+	962.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1354.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	5.80927332744917	5.65601326868046	5.74923483532859	5.67965259994821	5.85850641295176	5.75943967574607	0.0606707224383933	0.844531253640202	0.96373428957366
Merged-chr7-25683266-2	chr7	25682766	25683766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	intron (NM_172148, intron 1 of 2)	2108.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	5.7542743378222	5.65811904666391	6.12886720693903	6.12997679004294	6.27585052472722	6.20935563947365	0.622887506930658	0.0439985842647327	0.263910166693656
Merged-chr2-165882056-4	chr2	165881559	165882559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	219.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.74586468952189	7.53579368728328	7.35865817470919	7.59294540611515	7.65048226173506	7.34723419858849	-0.0284788225299771	0.907855093934671	0.979069714243211
Merged-chr3-95891979-4	chr3	95891489	95892489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	16.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	5.8628386078721	6.05381341973944	6.43543063502956	6.20516326171525	6.22860540394772	6.27612519658839	0.184182291355859	0.550427133768469	0.860709619458349
Merged-chr19-10690593-4	chr19	10690087	10691087	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	1852.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	6.51902335133857	6.17162501664719	6.44126339064025	6.25959269007453	6.24827813954347	6.23183709094305	-0.224559926562992	0.428270679388339	0.795116843467912
Merged-chr3-108295586-1	chr3	108295086	108296086	+	611.0	f0_balb.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	11522.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	4.03092409368357	4.12564496299982	3.73548529409042	3.56048621768348	3.71744182337467	3.75276563513452	-0.975366314238008	0.074263823136011	0.358430637790093
Merged-chr18-62180081-4	chr18	62179614	62180614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007420)	promoter-TSS (NM_007420)	14.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	7.8245261257226	8.02849824505545	7.68449125815884	7.77336653735298	7.84350735996326	7.7939955199697	-0.0787552572984186	0.727221778309276	0.930117738745381
Merged-chr12-73621914-4	chr12	73621412	73622412	+	788.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	37116.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.00341679614509	4.33266799177927	4.71578211198014	3.77328673424019	4.07734013390958	4.4176516627662	-0.7161352838023	0.197177376997797	0.58511894383854
Merged-chr4-71307662-4	chr4	71307160	71308160	+	735.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-772732.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	2.52110442103724	2.68855796095019	2.73269768700217	2.79777687818898	2.60721607612494	2.86594102286856	0.583972366144347	0.440219768122303	0.801709686782591
Merged-chr8-70354914-2	chr8	70354420	70355420	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1641.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	4.80567881825903	4.91659307272286	5.13924509380889	5.28188792226433	4.96963274405043	5.38335393983795	0.550052207320995	0.15567543731387	0.525567170406155
Merged-chr12-32131384-3	chr12	32130827	32131827	+	767.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70048.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	3.30168069323	3.18527326861317	3.55579817713169	3.31891393003148	3.15120039904444	3.72093444255079	0.230133082994141	0.724907928985764	0.929475409375828
Merged-chr10-94041602-1	chr10	94041102	94042102	+	560.0	f0_c57.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	5601.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	3.32737500946442	3.20619372426324	3.41071011311813	4.10860647434673	4.3140809475004	3.93565909915417	3.02221363321761	1.04269464798548e-06	5.61115472193496e-05
Merged-chr8-84912559-2	chr8	84912057	84913057	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103491)	promoter-TSS (NR_103491)	-778.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	3.64937641700811	3.35021058444801	3.38803213533894	3.3146666107895	3.25491019736324	3.22535012239089	-0.809339024987167	0.189858324165541	0.575907966795463
Merged-chr16-92022918-2	chr16	92022418	92023418	+	835.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA9|LINE|L1	-35404.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	4.22444334655427	4.12225287651038	4.0774960013554	4.2455773790679	4.25655653264146	3.99532935629701	0.0940049180019007	0.844281323368134	0.96373428957366
Merged-chr15-88146268-1	chr15	88145768	88146768	+	819.25	f0_balb.idr	Intergenic	Intergenic	-168606.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	3.98289215467291	4.27594205782128	4.36230835721208	3.21234571182274	3.14311065202097	3.35117675433118	-4.10638782621327	5.86396553716071e-08	4.4357167674188e-06
Merged-chr8-115706886-3	chr8	115706391	115707391	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	3.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.47971218923175	6.61499692391276	6.98693010004943	6.5840989432841	6.6817180224974	7.0196841074953	0.103411798124271	0.724797785269002	0.929475409375828
Merged-chr2-35509011-2	chr2	35508511	35509511	+	918.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-47562.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	2.46442521012676	2.39374055146974	2.54125682220176	2.32480735286785	2.37678826743102	2.36068837049597	-0.707792508934313	0.386985649639192	1
Merged-chr17-27857756-4	chr17	27857246	27858246	+	758.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	1239.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	6.88066881017753	6.73391329416202	6.40997872650219	7.33505574547304	7.54915645639775	6.71728011379252	0.851973585874441	0.00742614081304685	0.0816040382465967
Merged-chr9-70692519-2	chr9	70692019	70693019	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	13537.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.49296556043677	4.72430565585155	4.42877297341816	4.89709392941763	4.87104229118622	4.67326423664808	0.606351281472744	0.147071483497599	0.511751934047095
Merged-chr5-136217380-5	chr5	136216822	136217822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302938)	TTS (NM_001302938)	-18368.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	5.67579602027075	5.71710356888192	5.52974724507231	5.60120322867558	5.13891721593617	5.17562308223693	-0.62068736557684	0.0807253921287049	0.375953974313704
Merged-chr1-171617092-4	chr1	171616588	171617588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9678.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	7.19059018299065	7.21948324623586	6.83226238359353	6.61572744081036	6.76777554133262	6.26428897210196	-0.803453163375253	0.00535923136071756	0.0642274122227548
Merged-chr17-28705218-2	chr17	28704718	28705718	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	12650.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	3.55447190100553	3.90743528441414	4.08625905121277	3.73343929689839	3.53206114277977	3.88195171724074	-0.469376386672326	0.4123973327416	0.784461927725322
Merged-chr10-118609295-4	chr10	118608777	118609777	+	830.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52752.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	3.37786298276645	3.37803622735333	3.29438084835427	3.08513299087725	2.84593979873802	3.07280307137568	-1.5979756941391	0.0182174886631574	0.152062979452967
Merged-chr19-56530415-2	chr19	56529927	56530927	+	977.916626	f0_balb.idr|f1_balb.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17695.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	3.57391971716577	3.78164169629527	3.36883748186837	2.82944464217419	2.70585048740761	3.32830187569501	-2.36691854145673	0.229301779079471	0.624786902666991
Merged-chr16-13287648-2	chr16	13287148	13288148	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	Lx5c|LINE|L1	22569.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	5.18413757771297	5.25106369625138	5.24680179623094	4.7190421835375	4.99449056327404	5.2485535718375	-0.481295147248674	0.208334914424593	0.599216583593528
Merged-chr17-28259262-3	chr17	28258747	28259747	+	804.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	MTD|LTR|ERVL-MaLR	-12461.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	7.14569044944239	7.05658479743034	6.71099582209269	7.28210205607775	7.09167989742058	6.88226217549687	0.161612117380315	0.551181005335886	0.861024209682803
Merged-chr11-79250292-2	chr11	79249792	79250792	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 2 of 8)	B1F1|SINE|Alu	4403.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.45832037004396	4.21918828122448	4.30354433632315	4.41312587590051	4.06122384872704	4.23447795322151	-0.246607664483862	0.600299584134931	0.881562830647152
Merged-chr1-59482856-4	chr1	59482360	59483360	+	901.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008057, exon 1 of 1)	5' UTR (NM_008057, exon 1 of 1)	713.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	5.95200470876522	5.88500276318569	5.87688710436672	6.12696196519462	6.09187180707484	6.18574218146809	0.389429031177254	0.174940078871415	0.554615474222784
Merged-chr16-32111655-2	chr16	32111155	32112155	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11853.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	2.32577607055307	2.28830094372644	2.43064790899265	2.21574109210688	2.18763545503456	2.24829985917407	-0.918629264447089	0.283336256276137	1
Merged-chr2-160431024-2	chr2	160430524	160431524	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-63959.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.80865513396082	2.94931661390736	2.87145151172955	2.83046990930898	2.62766041085039	2.6935976786021	-0.837968134793525	0.254069887593117	0.651179145391095
Merged-chr19-34206700-1	chr19	34206200	34207200	+	868.0	f0_balb.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10808.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.07526945415017	5.09290604183934	4.78076613003864	5.17798535166849	4.88325438139086	5.20785750976643	0.186976383332312	0.630827033750901	0.894912420650784
Merged-chr4-127020600-2	chr4	127020100	127021100	+	730.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-701.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	4.92502816832455	4.92149120023736	4.98919549634265	5.41285021772134	5.47856735459577	4.63760482929189	0.619317639552173	0.149856087919948	0.516430953143218
Merged-chr9-20652596-1	chr9	20652096	20653096	+	771.0	f0_balb.idr	intron (NM_023371, intron 1 of 3)	intron (NM_023371, intron 1 of 3)	466.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	4.97676574348847	5.26644590466433	4.85585764863748	5.34125568782877	5.0828343769284	5.03769453710218	0.222825313339145	0.564866878240056	0.866552670637515
Merged-chr6-85374808-4	chr6	85374320	85375320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177466)	promoter-TSS (NM_177466)	-186.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	5.70213315962291	5.92463049060356	5.75084500776151	5.37887076652426	5.34976620077749	5.51529612018843	-0.730390216883709	0.023897434825363	0.181710477652272
Merged-chr2-91527088-2	chr2	91526588	91527588	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165989, intron 1 of 43)	CpG	326.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	6.79333910274124	6.58315195364538	6.10762335552907	6.72279119648614	6.59004121373856	6.40886624540128	0.0720618762100856	0.815787530631912	0.956488119276578
Merged-chr4-135306713-3	chr4	135306211	135307211	+	768.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-33951.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.86235572635009	4.71150260586184	4.98475344274444	4.81531876885385	4.59339803477147	5.26440600837886	0.12323456555728	0.774846429151969	0.944517829695789
Merged-chr10-118112544-2	chr10	118112044	118113044	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29243.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.67941260762979	2.6050850165094	2.6453743568926	2.77465686999464	2.49853454669549	2.84188993731529	0.351323186367162	0.646985863622807	1
Merged-chr16-50760137-4	chr16	50759626	50760626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23283.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	4.86611327247086	4.97573817076875	4.9377146078513	4.95891376598565	4.83409385298597	4.89312359361886	-0.0733129710411514	0.846218656466532	0.963978208772454
Merged-chr17-26438100-4	chr17	26437599	26438599	+	822.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	23134.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	5.78701196803322	6.08000852051018	5.97930690741753	6.2015895492942	6.57597079862652	6.19718420217711	0.665164605140768	0.0300573231562491	0.20927200612377
Merged-chr12-51691190-5	chr12	51690735	51691735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021710, exon 1 of 6)	5' UTR (NM_021710, exon 1 of 6)	269.0	NM_001329698	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	8.44530683817328	8.72523123541043	8.48105380790699	8.49528056782343	8.27080951162337	8.57839932140737	-0.150241934859549	0.498033068219496	0.833856267944725
Merged-chr15-58238034-3	chr15	58237551	58238551	+	714.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23159.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	4.18162638829209	3.9993854920152	3.78058931764238	4.0575452359549	3.67217172420737	4.0558777213758	-0.208724088587995	0.699591884620834	0.920619136555148
Merged-chr10-79684000-2	chr10	79683500	79684500	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	1805.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	3.12667940123812	3.04397221498521	3.476666557145	3.32399748738584	2.98772444163556	3.64384646719581	0.458978504036659	0.511034603630038	0.841306754621772
Merged-chr2-94145256-2	chr2	94144756	94145756	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	12653.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	6.51378136910483	6.76765065495125	6.54453028134137	6.60807735867334	6.74670746766393	6.70383301615131	0.111429698952109	0.671659120850818	0.910573176861295
Merged-chr11-95292176-4	chr11	95291675	95292675	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	18071.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	5.3172624855579	5.49263923896906	5.24341476774878	4.89304929153774	5.2979133964813	5.03097723760992	-0.533666939955453	0.154866099383379	0.524144738559782
Merged-chr19-5458408-1	chr19	5457908	5458908	+	875.0	f1_balb.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	-845.0	NM_001243307	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	3.80563290340082	3.75518909239591	3.70905268118269	3.68617166547345	3.70704280061239	3.61759659218641	-0.286578170029727	0.592482127538544	0.878046778323738
Merged-chr12-24758520-4	chr12	24758000	24759000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50246.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	5.01887653521678	5.06150423611429	4.7914261582832	4.33560998965651	4.37001763623573	4.07058074499451	-1.68049239444444	0.000206355584456447	0.00514392914063872
Merged-chr4-57956459-4	chr4	57955956	57956956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011660)	promoter-TSS (NM_011660)	-45.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	8.02153173669926	8.1875806704278	7.8449911666793	7.93497897120231	8.11063258622588	7.90909165876085	-0.0559440198802419	0.805162468179959	0.953787743121181
Merged-chr8-84840011-2	chr8	84839511	84840511	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001297606, intron 1 of 8)	MIRb|SINE|MIR	654.0	NM_001297607	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	7.56696349546556	7.44333085872715	7.40084163543921	7.44884838528685	7.57942054369715	7.20173350422438	-0.0673157553179841	0.779918365452367	0.945949149660645
Merged-chr13-107101157-4	chr13	107100654	107101654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	78584.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	4.20917412702302	4.45834662342414	4.69270217952752	4.74181529534925	4.3995149148476	4.89845746195013	0.551996432746968	0.233141662678328	0.629559663404242
Merged-chr8-70907194-1	chr8	70906694	70907694	+	561.0	f1_c57bl6.idr	intron (NM_173013, intron 1 of 6)	intron (NM_173013, intron 1 of 6)	1220.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	3.60365728606148	3.79386163648593	3.72288837033993	3.98271567602026	3.82265354212132	3.89582781226727	0.613160418594502	0.244333192536497	0.641614718441551
Merged-chr6-97511064-2	chr6	97510573	97511573	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-23253.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.61625861072507	4.92350050963658	5.16138580972232	5.82834713752325	6.27565910437015	5.88168237241273	2.15859970108209	8.84102628105033e-09	8.11073996464869e-07
Merged-chr13-21716337-4	chr13	21715822	21716822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	-90.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	7.03472472601364	7.21347677848655	7.06358766239005	6.87547081880598	7.35003265928013	7.32340046889895	0.141317447403508	0.592790918166233	0.878261820522927
Merged-chr8-13670258-2	chr8	13669758	13670758	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7329.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.14696012505381	4.04582241066714	4.3368572037254	4.2795555731463	4.05251943333251	4.36156810054289	0.152511953056214	0.750170623617846	0.937550343416037
Merged-chr7-126721821-4	chr7	126721260	126722260	+	979.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-16944.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	3.47738423927858	3.44446673042325	3.72103967524752	3.39879803475511	3.62309621484272	3.53595337066385	-0.0734420375807907	0.899575215884839	0.976656120908248
Merged-chr9-106296167-1	chr9	106295667	106296667	+	541.0	f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15106.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.31787157824316	4.26332409665674	4.33047295687905	5.27592705854233	5.38328868717309	5.13162104620767	2.25730853126796	3.49188079158295e-08	2.81270490712521e-06
Merged-chr1-36052818-4	chr1	36052318	36053318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15582.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.1067869373488	5.76400504563131	5.89939536732712	6.1412115860043	6.0292749852066	5.83490276313144	0.141071363339119	0.649510250114557	0.902169249503915
Merged-chr12-85646305-2	chr12	85645805	85646805	+	927.714233	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40415.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	2.78293296122044	2.79832065833457	2.62240352571843	2.95985540009483	2.71584392375449	2.95005058309414	0.687146328878996	0.354521746853719	0.74168645124508
Merged-chr11-94354593-2	chr11	94354093	94355093	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 26 of 30)	L2c|LINE|L2	26592.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	2.83054199136842	2.75442993782338	3.08377437184114	2.96691327854971	2.73640049937749	3.09963812668373	0.220218407383608	0.761343227282042	0.941249364906753
Merged-chr12-102340540-4	chr12	102340005	102341005	+	830.5059809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	56864.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.07847514502281	4.20535753016302	4.51852736345388	4.1083552662506	3.79701693169377	4.08101110702591	-0.786675468170549	0.121889387703963	0.467015341532961
Merged-chr11-117110696-4	chr11	117110240	117111240	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4432.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.99877885690899	6.84020200800421	6.62043409104275	6.75606919653885	6.94430839144542	6.35386853245294	-0.17701957962845	0.547770182770144	0.859445606128575
Merged-chr4-3083927-2	chr4	3083427	3084427	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88156.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	3.12229853049139	3.29230687831187	3.15099044357955	3.11032882202355	2.95379207457041	3.64176743984205	0.294717976335261	0.674238652321737	0.911841916826811
Merged-chr14-103350188-3	chr14	103349672	103350672	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.87757953617952	4.36041848829065	3.89534609467545	3.74571956482709	3.96407283667354	3.96564181682595	-0.525019435411731	0.330265067100859	0.721789606895393
Merged-chr5-80955530-3	chr5	80955030	80956030	+	798.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65041.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.5367576529844	2.46606802540965	2.82299495966232	2.91197232963331	2.59647484871347	3.06769270165904	1.35785452658134	0.0920384628226514	0.404166261581102
Merged-chr19-3379898-2	chr19	3379398	3380398	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-8959.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	4.78716003437539	5.28768895517028	5.82918764659002	5.1192471988336	5.29252150809886	5.53519548087164	-0.0811578442118878	0.854460981476195	0.965987623019113
Merged-chr12-34449546-4	chr12	34449032	34450032	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	79357.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.46710628289855	5.57130177741964	5.36559511792595	4.97378116143031	4.88496858106542	5.03189956453064	-1.06235628105373	0.0027001029159312	0.0388769966133939
Merged-chr3-96098777-4	chr3	96098260	96099260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5767.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	4.58648568559134	4.40342426915923	4.37938118234209	4.71651515814339	4.52150484883223	4.57730333634739	0.351527220051093	0.411310361347771	0.783877099438722
Merged-chr17-65844733-1	chr17	65844233	65845233	+	768.0	f1_balb.idr	Intergenic	Intergenic	40190.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	2.48640111366137	2.71718287596831	2.73388461708709	2.50112035023891	2.38098066883601	2.56071498945181	-1.01379378083515	0.207057748497874	1
Merged-chr19-47732161-3	chr19	47731661	47732661	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026377, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	405.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	6.6988171078442	6.7873701982878	6.82242472709232	6.41013401170043	6.52067381861628	6.18513522591956	-0.600895286425698	0.0264866972543217	0.193443790497463
Merged-chr1-67360991-3	chr1	67360483	67361483	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	237956.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	2.4433557719104	2.34163375268908	2.29589943736549	2.43322084808232	2.46593836035648	2.56604278458724	0.770872099308063	0.34691168481364	1
Merged-chr10-98916412-6	chr10	98915879	98916879	+	748.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	1227.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.79511664254	7.01906354755688	6.77540349621092	6.95147100446	7.11075037305739	6.75447544573604	0.128866819229518	0.623040744751726	0.891251075175817
Merged-chr7-44528151-4	chr7	44527649	44528649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019866, exon 6 of 6)	exon (NM_019866, exon 6 of 6)	-3480.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	5.93732001131546	6.2781834914474	5.14072242051833	5.24573947467222	5.31125412943652	4.91878308685677	-1.3155906702911	0.00272213451007006	0.0390832101367671
Merged-chr4-43445608-2	chr4	43445108	43446108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011571, intron 7 of 9)	intron (NM_011571, intron 7 of 9)	3331.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	2.56471236289439	2.52764170677559	2.88420830114389	2.58299710526393	2.48409892940444	2.95606467280731	0.11329101000456	0.888382166675608	0.97401529899353
Merged-chr4-89311042-4	chr4	89310540	89311540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007670)	promoter-TSS (NM_007670)	-8.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	5.64577415808557	5.7919039293627	5.58807085279009	5.10864329952399	5.29517199225224	5.15186771509698	-0.944641742067945	0.00557182712973282	0.0661653477680618
Merged-chr5-148452439-2	chr5	148451939	148452939	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52535.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	4.90842922166635	5.17733669775921	5.17660316449902	5.32658255102722	5.32496780263266	5.33526035260264	0.48640927702268	0.17239559436742	0.550892607862217
Merged-chr14-73142035-4	chr14	73141536	73142536	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-474.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	6.53532972727709	6.94150526250903	6.68617361945584	6.89871542047489	6.91283286642357	6.53685845522575	0.104907531581674	0.709937204369939	0.924166640014037
Merged-chr18-60777923-2	chr18	60777423	60778423	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 4 of 4)	intron (NM_020600, intron 4 of 4)	3327.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	2.20966182152873	2.33983723689754	2.42269647277557	2.30372979472232	2.11435316566247	2.23782885296664	-0.732446017280579	0.4013768649409	1
Merged-chr13-37827864-4	chr13	37827353	37828353	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	CpG	460.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.21599584054897	6.63865827942889	6.61346390067817	6.56470077040419	6.43965089920477	6.22573719191039	-0.125419126959471	0.670407421864325	0.910029595108128
Merged-chr2-167635136-2	chr2	167634636	167635636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3131.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	7.30120282566175	7.63832516699161	7.15811465892093	7.16423898147307	7.7936724083789	6.96606437922678	-0.0217940314144825	0.944994381731958	0.987875414328125
Merged-chr15-39113864-2	chr15	39113364	39114364	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198606, intron 1 of 10)	ORR1A2|LTR|ERVL-MaLR	990.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	3.74279293728129	3.7342139523498	4.04760838522462	4.37227587752312	4.0384287190156	3.91912427230513	0.858241902074896	0.103800809931023	0.429576136115614
Merged-chr3-101836726-4	chr3	101836222	101837222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-499.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	5.98364856963576	5.9131462563316	5.95279427249091	5.89406324340169	5.96449105727171	6.14501159437988	0.085384613219313	0.771978108123925	0.943680976839558
Merged-chr9-115314776-3	chr9	115314274	115315274	+	925.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4353.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	3.40481692286014	3.53454442531688	3.77031341562814	4.96887739033781	5.25285848774936	5.13244058748504	5.35178655828521	6.5417032895076e-13	1.29909796494833e-10
Merged-chr11-90238816-4	chr11	90238307	90239307	+	976.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10669.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.99763680094644	4.8150680117423	5.2989654937873	4.88036637215118	4.61354245608858	5.05720329224105	-0.417187357309248	0.314765956640628	0.709088999550579
Merged-chr9-63384894-4	chr9	63384382	63385382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7030.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	6.15909749114292	6.09164183411162	5.53769724609987	5.67975408622309	5.63385493941815	5.18778633114234	-0.792144921467513	0.0328162374108013	0.220705907086805
Merged-chr17-32269365-2	chr17	32268865	32269865	+	887.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	B3|SINE|B2	14758.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	5.99842076462738	5.95976433838106	5.87878457332339	5.73666655061362	5.9979444866453	5.94013997303912	-0.0894716727545521	0.766362966585726	0.942467872936068
Merged-chr15-98683936-4	chr15	98683438	98684438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	5.06927407324415	5.17020313402323	5.23144967067598	5.67897352748351	5.14517339421282	5.1962032189108	0.420351024261693	0.266626636455043	0.664166899200562
Merged-chr7-80340285-4	chr7	80339785	80340785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-66.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	5.77152589487902	5.51707573461549	5.75541964064709	5.83971311039325	5.48122085433693	5.91260422700453	0.117071170334614	0.727306809654251	0.930141386998351
Merged-chr6-32185470-2	chr6	32184970	32185970	+	735.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175750, exon 22 of 32)	exon (NM_175750, exon 22 of 32)	135182.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	4.32139889282545	4.48325227137967	4.06660328911612	3.90714374587853	4.16503445962569	4.32298048236297	-0.46716626649487	0.348210631628281	0.736088365340327
Merged-chr6-112752157-4	chr6	112751649	112752649	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-55479.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	4.93813534941434	4.58016983048692	5.12323213755772	4.38441694802462	4.6068351481936	4.50168273903333	-0.904822601377528	0.0403408359963609	0.250181134499903
Merged-chr12-91012717-4	chr12	91012213	91013213	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-33135.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	3.20558941934938	3.32852878306885	3.69399304050684	3.13718272704477	3.39264179223114	3.46595717046331	-0.307530921914353	0.633965191004252	0.896247399650521
Merged-chr6-114659697-4	chr6	114659199	114660199	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	16602.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.10627467162094	4.11468772041628	4.51425858369227	4.20205884230151	3.82303402661263	4.30136543010173	-0.373274926742222	0.469398950465644	0.818977178978635
Merged-chr6-124360757-4	chr6	124360247	124361247	+	959.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3661.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	5.3941554454026	4.64189820718495	4.46911222552797	4.40933312807629	4.47444081997392	4.67020070134664	-0.90273169287502	0.0664456194344702	0.336720139456795
Merged-chr6-142752717-4	chr6	142752235	142753235	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3951.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	5.17002166849055	5.32266953621616	5.54975152808295	5.32214125655558	5.21801008234342	5.55856159477192	0.0321177307465371	0.928643303524459	0.983838264232875
Merged-chr9-70503826-4	chr9	70503319	70504319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033604)	promoter-TSS (NM_033604)	-44.0	NM_033604	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	7.90564520176021	7.55868122607107	7.64694125623633	8.05065970375063	7.53244643441765	7.39622684634535	-0.0249161055983019	0.928322977647762	0.983802612059568
Merged-chr12-113138373-2	chr12	113137873	113138873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1863.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	2.44524534829767	2.07335015054271	2.08812519016895	2.30494941961207	2.29080469147566	2.43526530014752	0.838131868165224	0.375176066626043	1
Merged-chr3-144698589-3	chr3	144698082	144699082	+	962.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21753.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	8.43740210012269	8.49390936612711	8.21460051518353	8.35010895320111	8.6410754574254	8.21678318975348	0.0427421347188566	0.853989222490114	0.965878769929691
Merged-chr15-3995925-4	chr15	3995422	3996422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145930)	promoter-TSS (NM_145930)	-117.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	8.3571735977802	8.59956974452416	8.27998401891447	8.29402157415515	8.57486331947712	8.29788123751745	-0.0321930922016377	0.886867671904917	0.973794308941933
Merged-chr13-37844072-4	chr13	37843587	37844587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	16694.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.18818152734502	5.02154380464986	5.45781874374537	5.10704344574159	5.27824791945972	5.34942536530539	0.0485270840324198	0.895170138831118	0.975665889379756
Merged-chr6-124901256-4	chr6	124900748	124901748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	10457.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	6.21871458458141	5.86158348859153	5.85305984247715	5.95888746250447	6.02415304735795	5.57997256363011	-0.198655740268466	0.548260317142613	0.859612671354863
Merged-chr5-117089380-3	chr5	117088901	117089901	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26592.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	3.03133854265687	3.27595366776077	3.25685041665407	3.09352234508818	2.95849260177642	3.15919416646944	-0.542237841516542	0.411099674798064	0.783840094880781
Merged-chr7-141269068-4	chr7	141268598	141269598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028069)	TTS (NM_028069)	-2674.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	7.59174965949027	7.62905123854469	7.87255549741237	7.83281368366861	8.1629212512353	7.93662006997744	0.416813122322278	0.0755295185630967	0.361832009937138
Merged-chr5-124478989-4	chr5	124478452	124479452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-717.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	8.26737318057223	8.05334902733834	7.96838185808177	8.13078303908174	8.44788440283184	8.26612811287286	0.261316267925662	0.250626459989477	0.648071708284015
Merged-chr10-36888358-3	chr10	36887831	36888831	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86213.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	2.47127600120707	2.49738982708332	2.67903717443419	2.39879166636144	2.44858911923559	2.50620843265888	-0.589998943315751	0.458638022356376	1
Merged-chr11-51968124-3	chr11	51967660	51968660	+	792.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029976, intron 1 of 2)	intron (NM_029976, intron 1 of 2)	529.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	5.68188149453309	5.92267101950375	5.6229161121299	5.62553041830523	5.70135031563444	5.71266777586289	-0.140911154267108	0.657440139913859	0.904798742244684
Merged-chr9-123818827-2	chr9	123818327	123819327	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	12350.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	3.8199406853539	3.79373044831997	4.01446804219922	3.7484129945707	3.5482600000993	3.8965724972173	-0.470396625037175	0.384740233164067	0.765909022467958
Merged-chr17-67263056-4	chr17	67262559	67263559	+	976.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	91400.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.03321266566757	4.32914565205255	4.4383104358769	5.57880196350701	5.40801771172184	4.91597881882483	1.45543323883522	0.00233640125908746	0.0347889351280781
Merged-chr10-60261161-2	chr10	60260661	60261661	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16467.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	8.00157525688027	7.82676641933221	7.73707192743611	8.10840897841964	8.20850290832423	7.71103049781767	0.244209495383858	0.319254075630951	0.71327503587815
Merged-chr17-32788355-4	chr17	32787874	32788874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	-87.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	7.06778676384986	7.62166166682556	7.23476510332233	7.37600027197302	7.3317688263902	7.24454833277521	-0.0226963840806298	0.931630041936751	0.984929477721491
Merged-chr8-125542784-3	chr8	125542264	125543264	+	764.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	27099.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.48022366924207	4.31551037778119	4.41537330628673	3.5833272774135	3.30411196797866	3.99951861263459	-2.4401510431934	6.40757701996635e-05	0.00194869030949328
Merged-chr14-122292663-3	chr14	122292179	122293179	+	935.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-59041.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	3.84071724206485	3.96848685001687	3.80184338175007	4.05512192511952	3.87322886760671	3.92400360122352	0.230551252862236	0.650748237625297	0.902668504553081
Merged-chr14-31193979-4	chr14	31193411	31194411	+	968.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	12915.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	4.67687849357488	4.76437958726481	4.4214051533624	4.52124574253558	4.61364131604465	4.57748838858616	-0.160213470625704	0.705397290997566	0.922756484933722
Merged-chr11-114818470-4	chr11	114817978	114818978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19554.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	5.78573453408292	5.25482429786251	5.22202307912498	5.20413036152032	5.09352569643009	5.18484947900589	-0.593246132640513	0.118571630056681	0.460027973177699
Merged-chr11-84827513-2	chr11	84827013	84828013	+	891.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177564, intron 1 of 6)	intron (NM_177564, intron 1 of 6)	1490.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	2.6950838924454	2.69521538037626	2.75079879236423	2.98560307692453	2.87546065553963	3.28553238834512	1.70974373813352	0.02089259277451	0.16618209153823
Merged-chr9-118674502-4	chr9	118674055	118675055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-37137.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.90112333252796	7.78481335329752	7.56693068657859	7.50826327342284	7.61104635152634	7.27323206575649	-0.411702942565959	0.0894085632578364	0.397261052574254
Merged-chr3-107113400-1	chr3	107112900	107113900	+	666.0	f0_balb.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	11833.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.0910870584176	4.19141562772052	4.33764906087992	4.29043481858472	4.4266597870575	4.27239602171715	0.3603954834962	0.431953233066611	0.797162418904554
Merged-chr13-43767124-2	chr13	43766624	43767624	+	888.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCAG)n|Simple_repeat|Simple_repeat	-17988.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.06438016089163	6.44968399227432	6.47203504772817	6.57875568166881	6.30847306031781	6.20694361646132	-0.520696857925632	0.102666089544301	0.42723880864227
Merged-chr4-129541283-2	chr4	129540786	129541786	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008228, intron 1 of 13)	intron (NM_008228, intron 1 of 13)	1360.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	3.00090817295787	3.18335810197204	3.48201603451908	3.33294612251221	3.35032840473988	3.33962436187541	0.450499140772844	0.486309338769981	0.827772429841514
Merged-chr11-53769937-4	chr11	53769434	53770434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-80.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	8.09627485234686	7.85196745990631	7.87438733958623	7.77329632710587	7.83067252662453	7.93066233692536	-0.148273290859434	0.502601335899699	0.836562439638842
Merged-chr2-180117303-3	chr2	180116804	180117804	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2062.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	3.00865483550771	2.84201969956565	3.06951299963231	2.86880036763857	2.7602335331123	2.84555253480436	-0.742968833313573	0.291913194310703	0.689235268138963
Merged-chr4-102509899-2	chr4	102509399	102510399	+	775.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-60161.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.80685287460569	2.9378766625066	2.81753300547343	2.97981228523056	2.71640823875344	3.01181665622626	0.229275598956656	0.749167005350636	0.93719392324485
Merged-chr15-76795018-4	chr15	76794529	76795529	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	23141.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.22916570990957	5.34404699416771	5.55809809066589	5.12701442191358	4.89089655633702	5.21875649975798	-0.614861299610783	0.0947928425772675	0.410423709291772
Merged-chr4-156198632-2	chr4	156198132	156199132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_015783)	TTS (NM_015783)	-1144.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	5.72823324335153	5.5532538148246	5.75572197874504	5.69024351803268	5.73774280852402	5.51581487301337	-0.0326181830747904	0.918784580933147	0.981830442564507
Merged-chr13-100833480-4	chr13	100832988	100833988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022885)	promoter-TSS (NM_022885)	-61.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	8.06739172527387	8.35605420247782	8.00783092853855	7.90269786130517	8.16530270959526	8.11395605472486	-0.12839093521765	0.57844135627714	0.872437129840066
Merged-chr9-124015548-3	chr9	124014997	124015997	+	912.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-6474.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.22157687823563	6.16039447744514	6.20229467923916	5.89940169977279	5.85872080386139	6.26220100430379	-0.322319926225085	0.281606079349337	0.679734270520554
Merged-chr2-72788957-3	chr2	72788455	72789455	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102348, intron 2 of 5)	intron (NR_102348, intron 2 of 5)	24762.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	3.8675937155541	3.86641993296133	3.78349812211052	4.96291193330779	5.17284941655688	4.96284889024144	3.23282168297145	1.53260508112926e-10	1.97407126301244e-08
Merged-chr3-96301333-3	chr3	96300828	96301828	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7359.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	8.06282459512551	8.03629814802869	7.68269057238811	8.05151076297595	8.3559178933724	7.92245483364314	0.261535211537419	0.291624552778947	0.689180216265016
Merged-chr11-115132936-2	chr11	115132436	115133436	+	684.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	intron (NM_001169153, intron 1 of 6)	1056.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	5.80671308836336	5.9046815442877	6.01669982671031	6.40214938453646	6.73511163367622	6.46333561871817	1.07737388893994	0.000195307820006251	0.00491863592223974
Merged-chr9-107888089-4	chr9	107887603	107888603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028369)	promoter-TSS (NM_028369)	-26.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	5.32994831126829	5.48407798511524	5.79196822252889	5.38874560781929	5.25346700465172	5.21502792530486	-0.484586232792141	0.172157845995098	0.550749681454482
Merged-chr10-25289739-3	chr10	25289276	25290276	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	9387.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.32093763057402	4.21238175110344	4.54086898497218	4.02775156340689	3.78498653401542	3.78777821482884	-1.41445097732882	0.00548624383070253	0.0654198017576808
Merged-chr6-49321357-5	chr6	49320767	49321767	+	725.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311112, intron 1 of 3)	intron (NM_001311112, intron 1 of 3)	1993.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	3.35680094636747	3.62998028340028	3.69596031331365	3.4899407013204	3.12230667770884	3.66660608113383	-0.461972346712881	0.469522321584835	0.818977178978635
Merged-chr1-36436794-4	chr1	36436296	36437296	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310517, intron 4 of 8)	L1MB7|LINE|L1	8475.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	5.39819228517995	4.90700148886309	5.73457282352543	5.18032303399341	5.44363063876191	5.62562883957465	0.0861043973372346	0.833429039099869	0.961070491919313
Merged-chr12-4208924-4	chr12	4208409	4209409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 16 of 21)	intron (NM_001159537, intron 16 of 21)	25056.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.74499103725745	5.50206622101038	5.72160303605698	5.27968976071807	5.03172744121305	4.85761452606632	-1.14933223936222	0.00163728371783481	0.0264842736379469
Merged-chr12-82208288-2	chr12	82207788	82208788	+	679.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	38272.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.11813560543878	3.08186432209741	3.09853869399943	2.70082335987339	2.72845528026558	2.8741030340528	-1.71712810155288	0.0180978766639729	0.151436858553485
Merged-chr7-28528053-5	chr7	28527463	28528463	+	982.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5127.0	NM_177396	338374.0	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	4.35730526717903	4.32302788060681	4.18369049043573	4.24130927487143	4.07516911188666	4.25222422558947	-0.299822397989933	0.516672050643552	0.844296391152365
Merged-chr4-128993167-4	chr4	128992652	128993652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033966)	promoter-TSS (NM_001033966)	-72.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	6.35884812215647	6.60275160506819	6.54878787727188	6.68056586679577	6.78167394614312	6.46382851471527	0.241618254806253	0.374777937043975	0.758128885281656
Merged-chr12-3356250-2	chr12	3355750	3356750	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8882.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.26006662641274	5.66995737291114	6.00648481413086	6.81171733116359	6.50514671306546	6.60041286467434	1.05634780952316	0.000818937495772689	0.0154181982154825
Merged-chr4-141147914-4	chr4	141147399	141148399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-23.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	8.37175146621656	8.58891754248729	8.33520968082824	8.2683434952987	8.50743690591981	8.34872571608692	-0.081506561301986	0.706395145239627	0.922959194348248
Merged-chr15-77832789-4	chr15	77832294	77833294	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9381.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.13251044967339	4.28625767022041	4.44019748185464	4.33876324748662	4.16326264577469	4.42454505935384	0.054152866215993	0.906973077833846	0.978868492078838
Merged-chr13-94296123-4	chr13	94295619	94296619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10288.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	6.80901461444318	7.32426197225824	6.87294226640758	6.98903263368051	7.15119467228302	6.62005705031911	-0.123006098219569	0.679686561028632	0.914024131867986
Merged-chr17-80567447-2	chr17	80566947	80567947	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-3613.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	2.91974341149156	2.90174557579184	3.34771501210022	2.75743102236361	2.70456803922096	3.00488469240505	-1.22776280311075	0.102654550380993	0.427236732425048
Merged-chr19-44363605-4	chr19	44363116	44364116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30290.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	4.40431267657538	4.38394094240728	4.67288681212661	4.8026188556665	4.87682829007299	4.44592205835266	0.607904565579112	0.165058729633541	0.539748644772511
Merged-chr8-56285055-4	chr8	56284559	56285559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-9493.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.78271381740074	6.14646918984459	6.20619444555566	6.0224914122498	5.94787265116022	6.28522811732295	0.0531033589326322	0.866011470422441	0.96870531720476
Merged-chr16-58476546-4	chr16	58476068	58477068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	46858.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.17220088962938	7.2426643026232	7.29600381329308	7.2924656199779	7.37134866281026	7.18908702667344	0.0842248447469172	0.716775220438653	0.9268287885355
Merged-chr11-23697071-2	chr11	23696571	23697571	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	31095.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	3.59382025239179	3.60646986046518	3.56154349753247	3.75366270138063	3.81412134850844	3.63308372350214	0.519704505716278	0.340470882988832	0.730173453949955
Merged-chr2-90479337-1	chr2	90478837	90479837	+	843.0	f1_balb.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-163.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.18723134741506	6.89392709908866	7.17185479457899	6.85160619947339	6.82376236142338	6.71959818738453	-0.437093853689106	0.0852692417720463	0.386467324208089
Merged-chr11-78791682-4	chr11	78791180	78792180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34915.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	4.20118290530187	4.60434289356245	4.51634055007249	4.35050837581826	4.26509191955791	4.54234898750663	-0.175898965471946	0.702118756794947	0.921757269771603
Merged-chr13-52602995-4	chr13	52602475	52603475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6093.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	8.30586686115101	8.07946601884421	7.86634717862323	7.66622012107922	7.67904249522954	7.1610502367816	-0.812058843973559	0.0022979049982654	0.0343830388591382
Merged-chr6-89258878-3	chr6	89258381	89259381	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26844.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	6.82615384741973	7.08966441369273	7.08622250203045	6.66655111472423	6.9387843900485	6.58204498587376	-0.393144634470882	0.143700778812224	0.506028730682277
Merged-chr15-57706272-4	chr15	57705741	57706741	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11574.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	5.85031288233496	5.73571172017148	5.47274291920987	5.83593592916438	5.96357975898034	5.37269174910765	0.106261663934837	0.763762090226137	0.941804973525244
Merged-chr6-24665081-4	chr6	24664586	24665586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167745)	promoter-TSS (NM_001167745)	-91.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	8.48339072830587	8.76551836333977	8.35475784426904	8.20961630451334	8.40626467562637	8.12320756953351	-0.409940614385024	0.0762004391634754	0.363369438179621
Merged-chr2-57181922-4	chr2	57181416	57182416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040356)	promoter-TSS (NR_040356)	85.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	5.90594837484319	6.02059535622547	5.38362684516202	5.61181011756451	5.92381185658447	5.48171879516013	-0.204686089186715	0.575032529278781	0.87094931637326
Merged-chr7-143059645-4	chr7	143059143	143060143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5957.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	6.09966112919207	6.12792379233697	6.34838289267558	6.07168015592049	6.21954186519493	6.4434801419559	0.0974977800824668	0.739378555440425	0.934221320513361
Merged-chr7-43660880-4	chr7	43660390	43661390	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	-729.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	5.92672130102504	5.97258874585823	6.00643412297215	6.26411827537756	6.31361979989217	6.70370928304287	0.781536673742266	0.00867147430621994	0.0912412789671154
Merged-chr11-93994171-1	chr11	93993671	93994671	+	616.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-1920.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.41471047567306	6.52313793929967	6.43291045317693	6.23647680030741	6.46631908300272	6.4374504832606	-0.120450497857522	0.65649666422502	0.904654860421566
Merged-chr13-3548064-4	chr13	3547537	3548537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	MLTR11A|LTR|ERVK	9962.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	5.49852994224677	5.28192529227616	5.76040385780376	5.0835158254294	5.27417619016977	5.70272083022319	-0.289898442389213	0.449620202389525	0.807912363150876
Merged-chr19-12805896-3	chr19	12805377	12806377	+	636.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 2 of 8)	L2|LINE|L2	7298.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	5.7837790934979	5.79897244512119	5.79563568098999	5.47888399241313	5.34765559654912	5.38496780065161	-0.729871173162256	0.021691787656974	0.170437230156893
Merged-chr1-39579349-4	chr1	39578844	39579844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1997.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	7.54781856085236	7.53293491221555	7.41923000368	7.39872155703296	7.46963461010431	7.4122910931798	-0.111378179169859	0.617515559062456	0.888810836054056
Merged-chr1-75192683-4	chr1	75192174	75193174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288612)	promoter-TSS (NM_001288612)	514.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	7.76430533608009	8.01779317837019	7.75198911223479	7.72880611208584	8.18233109222067	7.77341389882915	0.0936303885995017	0.708144682298637	0.923620645882265
Merged-chr13-98944795-4	chr13	98944289	98945289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18405.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	7.44569410161942	7.65179602329601	7.35784385151695	7.82397765513648	7.841473888511	7.49157810603106	0.346857682181472	0.153860718215322	0.522977732354242
Merged-chr13-93498995-4	chr13	93498471	93499471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	837.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	8.01937661557268	8.50790320393691	7.69921230012339	8.0023554237971	8.07716422569001	7.59776467428841	-0.301476985932648	0.303368673392197	0.699902971652469
Merged-chr5-122965690-3	chr5	122965193	122966193	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	23406.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	2.62882874709609	2.68949771529103	2.76604417051407	2.8296516395915	2.6383992286314	2.89885915569293	0.501995830999057	0.495916953610262	0.832796986336812
Merged-chr17-3114963-4	chr17	3114440	3115440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-32.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	7.88584105742317	8.20916929898664	7.57445253179417	7.85335342982258	7.63146786723709	7.50734579827052	-0.357811858815229	0.178163472224506	0.559276830911593
Merged-chr10-127604747-4	chr10	127604239	127605239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	16409.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.95452918676147	7.67915517958692	7.29470080385353	8.00804893584026	8.20030245961672	7.65785613475972	0.431246078838534	0.12603516872518	0.474777397325473
Merged-chr3-105904457-4	chr3	105904030	105905030	+	889.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009631, exon 1 of 2)	5' UTR (NM_009631, exon 1 of 2)	109.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	4.51431898498918	4.56227051270519	4.53392112837299	4.52196342889101	4.20536484515505	4.67851823224414	-0.166925411799411	0.708730246946204	0.92375127577894
Merged-chr5-107853960-3	chr5	107853463	107854463	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 1 of 17)	ORR1D1-int|LTR|ERVL-MaLR	21144.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	3.23824828636187	3.06756059664092	3.43842579498507	2.87744127817203	3.10844815931471	3.24512734064308	-0.71850758447162	0.294325646739568	0.691014599303236
Merged-chr4-59544924-4	chr4	59544416	59545416	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	4448.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	5.18593999564493	5.2310869400838	5.03556491249567	5.1271018275978	5.05956499923503	5.20256026097114	-0.0730614472036305	0.838648139109223	0.96255643337768
Merged-chr19-34516622-2	chr19	34516122	34517122	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10852.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	8.16360566035849	8.16074703229441	8.03112304216601	8.21215062544963	8.53949907588274	8.38607396024173	0.373515209332792	0.0863708363427801	0.389274878175464
Merged-chr4-132794938-4	chr4	132794450	132795450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1414.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	8.56667236057021	8.22271540491926	8.03907448174932	8.68370972460157	8.96791857065347	8.19029130695478	0.500009373668086	0.0768034262985967	0.365129691660795
Merged-chr5-99246354-3	chr5	99245940	99246940	+	886.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6487.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.94542741130202	7.04317125892944	6.84450090519284	7.14154634363289	7.18417777716879	7.09780678135757	0.29064623780204	0.225755255579465	0.620701256044383
Merged-chr10-54077216-2	chr10	54076716	54077716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038016, intron 1 of 2)	intron (NR_038016, intron 1 of 2)	1294.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	4.30600403497959	4.34504791969481	4.12293445509275	4.2289091863109	4.17050695250595	4.14348699039155	-0.236702007453533	0.60993282055439	0.885346570120127
Merged-chr1-138543687-3	chr1	138543184	138544184	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 3 of 9)	RLTR11B|LTR|ERVK	76073.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	4.48174321797175	4.22882467399108	4.71003124278944	4.58945465745972	4.2840943545025	4.58621060030939	0.0223975186757412	0.961227661566334	0.990484170413432
Merged-chr17-26498443-3	chr17	26497918	26498918	+	996.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	10054.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	6.49817723490287	6.50933925741129	6.45633460906778	6.24785618243219	5.98512772133571	6.38866292717717	-0.46959787887137	0.098040909443253	0.41740626243114
Merged-chr3-127490183-3	chr3	127489676	127490676	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	URR1B|DNA|hAT-Charlie	8939.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.86748410358643	4.00617468907094	4.36013109201312	6.57657617920166	6.74340904574353	5.61157907629787	5.71658920386048	4.30023358967966e-21	3.37560223141571e-18
Merged-chr7-29236656-2	chr7	29236156	29237156	+	558.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357668)	promoter-TSS (NM_001357668)	-938.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	3.68123240601455	3.77658676472552	4.11541110842381	4.35518121888216	4.51139929591494	4.40457937421662	1.64774586208935	0.00102858670708991	0.0184295096303913
Merged-chr8-92881443-4	chr8	92880924	92881924	+	978.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 7 of 12)	intron (NM_001357375, intron 7 of 12)	-19971.0	NM_027112	69543.0	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	3.00576365352935	2.96546689519881	3.23325217567674	3.41358040203255	3.4001972036045	3.4163268314665	1.47205358248454	0.0222460025209325	0.173247498476195
Merged-chr5-54025827-4	chr5	54025338	54026338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	27315.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.55534944845838	3.90337318634502	3.54966436877712	3.67336404617963	3.62203612913559	3.56513168679086	-0.222831346605266	0.696112415970727	0.919325798080982
Merged-chr4-147350802-2	chr4	147350302	147351302	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	174936.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	2.51381907167243	2.54491061914226	2.58168349573052	2.62632651560635	2.43658999745694	2.89479647474225	0.637032015703622	0.423303585821584	1
Merged-chr8-64832320-2	chr8	64831820	64832820	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 2 of 14)	intron (NM_178633, intron 2 of 14)	17604.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	2.85000781289034	2.99536089776351	2.76419623593173	2.8619279493697	2.90565203074265	2.96127027961309	0.14908361139778	0.832500473974688	0.960616839788396
Merged-chr1-138622745-2	chr1	138622245	138623245	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	4.08961374490425	3.78209050397299	3.95715583082847	3.69815323442285	3.46155623723369	3.72643815316207	-1.06738055427157	0.0531852116292473	0.295652711685041
Merged-chr18-61108680-4	chr18	61108182	61109182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	3110.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.95639447530111	6.47237976912428	6.68521462156486	6.88942701376382	6.71779563255753	6.77558334742936	0.113739492247416	0.681207584539039	0.914599647187446
Merged-chr8-61923044-1	chr8	61922544	61923544	+	545.0	f1_balb.idr	Intergenic	MLTR11B|LTR|ERVK	-5043.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	3.04917251895284	3.12993652343716	3.40408036249376	3.55243565157488	3.21680350021106	3.13001836738725	0.47513144585215	0.474262012847706	0.821343873734808
Merged-chr4-139156664-4	chr4	139156188	139157188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23967.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	6.09134413870736	6.14668327854984	5.57981816403421	5.53694779910438	5.31352960317727	5.42764520411554	-1.00899974456679	0.0033598614675762	0.0457586854404625
Merged-chr19-6141091-4	chr19	6140587	6141587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	50.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	8.3930085560599	8.48226114363067	8.24676248191358	8.35495463517204	8.36336144472117	8.02201303143822	-0.165655641352861	0.460194442114331	0.814287275692701
Merged-chr4-40774458-4	chr4	40773928	40774928	+	834.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-16543.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.13148409938479	3.91568573396549	4.29394033351892	4.29647920958732	4.12320401513494	4.08862077493287	0.167683350384477	0.731420932673402	0.931379667083258
Merged-chr9-24349664-4	chr9	24349189	24350189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153451.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.60698526206792	3.59752867994232	3.76984337046309	3.76697845069192	3.54299732025552	4.06921677592181	0.47793663154539	0.398974247645765	0.775560079385791
Merged-chr5-124049675-2	chr5	124049167	124050167	+	890.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17407.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.1488531511717	7.27253851809149	7.33045848409029	7.23828428923663	7.37914308606781	7.22817175703129	0.0575744340300611	0.805713947567729	0.953956034266138
Merged-chr2-165318060-4	chr2	165317567	165318567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1716.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	8.40012408909034	8.57802541014741	8.32111892703941	8.18225812491822	8.51462434183161	7.78165848545257	-0.328011018540197	0.214438942744349	0.607538973573768
Merged-chr11-86752525-2	chr11	86752025	86753025	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	(A)n|Simple_repeat|Simple_repeat	5042.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.9522173169841	5.72604793524298	5.73751000038439	6.10909274809363	6.00245898080808	6.15261394770602	0.473826749832996	0.11465743777479	0.452186398382538
Merged-chr13-33003682-4	chr13	33003177	33004177	+	785.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	-864.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	6.09278031823258	6.3247635303654	5.84744476223844	6.64487945421271	6.76812200153216	6.13831209621596	0.725219483836242	0.0264098768033042	0.193035227428789
Merged-chr4-45018607-4	chr4	45018158	45019158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285800)	promoter-TSS (NM_001285800)	49.0	NM_001285800	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	4.78321662643452	4.701902180843	4.91412714076646	4.80080675157808	4.69994905961979	4.6359225286191	-0.183568269358981	0.645478132285465	0.900567488241066
Merged-chr4-102534224-4	chr4	102533726	102534726	+	853.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-35834.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.63357566837062	2.609469049529	2.79536310777792	3.45424160205134	3.54269310842438	3.73219273022621	7.00017310006337	5.73805054626706e-08	4.35755138207085e-06
Merged-chr11-104387544-4	chr11	104387039	104388039	+	794.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	54752.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.4094118718095	4.56699190184159	4.76431430154244	4.47621959908754	4.59941000085564	4.60255268303214	-0.044941602925513	0.916230407840091	0.981243905880233
Merged-chr6-83488708-4	chr6	83488195	83489195	+	897.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 3 of 6)	intron (NR_149734, intron 3 of 6)	18274.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	5.12139896679417	5.38225440974489	5.69787852036748	5.32266469989585	5.20699786201687	5.41685933941666	-0.193041289982393	0.600899561011838	0.881855262262798
Merged-chr1-152615161-2	chr1	152614661	152615661	+	840.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	LTR90A|LTR|LTR	10056.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.17555760514304	6.15051900092281	6.43681857785007	6.28444439456038	6.42805372973746	6.58043367540503	0.298195692523038	0.293692579817772	0.690424156263798
Merged-chr13-112058306-4	chr13	112057795	112058795	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190359.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.65372548672664	2.47760627401087	2.89976261122521	2.49453664747207	2.26601237512403	2.55598009598811	-1.46745711641299	0.0878078199596625	1
Merged-chr7-101364989-4	chr7	101364502	101365502	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	MIRc|SINE|MIR	-13120.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.96397811489414	4.92390193586484	4.56911632270911	4.73773556564181	4.48526682292026	4.4563408116701	-0.639907021584553	0.134686721017333	0.490545946004123
Merged-chr9-108334615-2	chr9	108334115	108335115	+	600.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016802, intron 4 of 5)	B1_Mus1|SINE|Alu	-4465.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	3.24576181939206	3.22638681064921	3.74341402063464	3.40392953428403	3.29581508173172	3.67026795165465	0.151900747467585	0.813326068977526	0.955940138311315
Merged-chr4-147349514-2	chr4	147348971	147349971	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	A-rich|Low_complexity|Low_complexity	173605.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	2.78041821828987	3.03179963043195	2.8638526853142	2.85095858241633	2.96285621080572	3.1133386495039	0.368473060516403	0.601584321109953	0.881992955402562
Merged-chr9-106160875-3	chr9	106160359	106161359	+	616.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-2721.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	6.90760651686636	7.13200231615661	6.89539118257695	6.60941843872093	6.66076530691937	6.57335707765404	-0.575074023162372	0.0238797215051702	0.181658792009709
Merged-chr6-134102599-4	chr6	134102089	134103089	+	854.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	66889.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.98770243498783	4.35337686026936	4.26884954927269	4.38149062951303	4.00931202778595	4.37939562526637	0.131827267343931	0.789712047247569	0.949297313310831
Merged-chr2-125866256-4	chr2	125865767	125866767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291002)	promoter-TSS (NM_001291002)	44.0	NM_001291002	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	5.41802150241627	5.39718644201564	5.25185378106292	5.09199614467471	4.86645248305306	4.67136621412387	-0.972818997286444	0.0104721751666282	0.103735942230873
Merged-chr5-99230479-2	chr5	99229939	99230939	+	571.5	f0_c57.idr|f1_balb.idr	intron (NM_181318, intron 8 of 13)	L1ME2|LINE|L1	22488.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.26843863517168	4.16516084670477	4.33584870406266	4.4705063397945	4.25153059827961	4.48708112366679	0.388470533919573	0.390562104611939	0.769709187384245
Merged-chr11-73192566-2	chr11	73192066	73193066	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 4 of 11)	intron (NM_001357891, intron 4 of 11)	6453.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	3.23391502285909	3.43954283211165	3.90947529669568	3.16570202939552	3.15043232189537	3.61307977828479	-0.852386773633093	0.211000997825671	0.603332337700291
Merged-chr11-120547498-4	chr11	120546894	120547894	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033231, intron 1 of 4)	intron (NM_001033231, intron 1 of 4)	2333.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	3.59616530979404	3.62861916312293	3.5345947513566	3.65874408595079	3.89869880954514	3.43084587388119	0.339222144586045	0.560446464574008	0.865236087802179
Merged-chr19-9914023-4	chr19	9913534	9914534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14501.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	8.53821703825114	8.54893188973769	7.87669990438714	8.42138494455546	8.51519688801663	8.14431981875246	0.0108706056107199	0.967875484385063	0.992633833139547
Merged-chr5-108270674-4	chr5	108270122	108271122	+	818.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	1725.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	4.89164679140492	4.99347083473027	5.05499555356874	5.48849983116874	5.31010337907246	5.31790180366491	0.817550639967019	0.0216317562848337	0.17021375617691
Merged-chr1-194981091-2	chr1	194980591	194981591	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	2.6751910641659	2.85923016932857	3.02686522774244	2.78101693767721	2.87343218229457	2.86583644355181	-0.0764761710195108	0.915769781883658	0.981200822249461
Merged-chr7-92742238-3	chr7	92741804	92742804	+	816.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015510)	promoter-TSS (NR_015510)	590.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	3.53880939705292	3.42311414519086	3.53188020208057	3.82687187772963	3.6071075565231	3.81135646719515	0.873405234588497	0.118487074095483	0.459921210483695
Merged-chr8-115614338-4	chr8	115613844	115614844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92550.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.98956248958002	6.85326630895216	7.10175398095806	6.90431637692113	7.0392580297011	7.35106260225679	0.189143906225789	0.471113997217694	0.819887339590267
Merged-chr11-48903075-3	chr11	48902592	48903592	+	587.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-940.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	5.19148702492028	5.60971399847999	5.33796944788137	5.61688740921625	5.70085359189514	5.58160561251336	0.454387131867973	0.186247260579313	0.570803258887202
Merged-chr5-135545475-4	chr5	135544956	135545956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146001)	promoter-TSS (NM_146001)	-334.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	5.30498539265697	5.27096449384097	5.25882269039808	5.27240211050266	5.45816801573117	5.22412705886174	0.10421441511963	0.76297387268253	0.941663714620562
Merged-chr7-34193871-2	chr7	34193371	34194371	+	653.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 3 of 6)	B1_Mus2|SINE|Alu	2799.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	5.94919788807712	6.25912390062511	6.35655326676796	6.39116412013602	6.40502300274268	6.32100215349032	0.303321806167438	0.293136981020248	0.690190772969237
Merged-chr11-22989513-2	chr11	22989013	22990013	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1080.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	3.29530073917736	3.45389550327881	3.67512522014783	3.25700722254835	3.20447556957457	3.54668009806806	-0.53976572544557	0.387514978134777	0.76768118438771
Merged-chr2-6256984-4	chr2	6256481	6257481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43987.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	7.26320786114759	7.04314822503659	6.9141366815098	6.6649090756315	6.92025262986262	6.7110801941558	-0.476402675916395	0.069511937998209	0.345001451652548
Merged-chr11-60538802-5	chr11	60538229	60539229	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172943, exon 1 of 4)	exon (NM_172943, exon 1 of 4)	1046.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	8.60846945224819	8.65464081929046	8.16796809880574	8.2644859791992	8.45873932119423	8.34656444705259	-0.196576590020611	0.402244985062971	0.77787096574423
Merged-chr3-10440094-4	chr3	10439583	10440583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029068)	promoter-TSS (NM_029068)	47.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	7.35909818396827	7.36172782801787	7.14325529589738	7.36140281578928	7.06411212666538	6.8480866775394	-0.272149376530615	0.300446120068212	0.697298854445564
Merged-chr1-85899550-3	chr1	85899095	85900095	+	636.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	5085.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	3.81766044971702	3.85973171396984	4.08682541026956	4.08735246182773	4.18080151455918	4.56305132100715	1.04814008014827	0.03905385232069	0.245142822245998
Merged-chr6-115879908-4	chr6	115879379	115880379	+	961.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 5 of 28)	intron (NM_001167763, intron 5 of 28)	26351.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	4.22010300998934	4.05808287012547	3.90314531514563	4.11880620903169	3.98001218767291	4.02490651576424	-0.0963301919277946	0.845684682935126	0.963850894494439
Merged-chr7-35555958-4	chr7	35555443	35556443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033080)	promoter-TSS (NM_033080)	-15.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	8.34060489533903	8.79441785137019	8.05698196410571	8.39907858527531	8.3613981817706	8.04453988080779	-0.223250458357515	0.410349805558965	0.783182022179286
Merged-chr1-54896804-4	chr1	54896412	54897412	+	923.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	29475.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.61720027531424	5.80378312484215	5.43558775848823	5.31466920381478	5.35422659479047	5.55724438222369	-0.441163194562049	0.193646036876158	0.580917166109939
Merged-chr13-100124898-4	chr13	100124413	100125413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011420)	promoter-TSS (NM_011420)	58.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	5.94592412292268	6.10039019458645	5.70256777344868	6.11535752029106	6.16878435422302	5.55517166569938	0.0932249318784437	0.786447277234031	0.948503833695066
Merged-chr8-67956770-1	chr8	67956270	67957270	+	631.0	f0_balb.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17804.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	4.54903564270785	4.88053249773659	4.72621374366164	4.16717136439244	4.63667016131004	4.42212932559408	-0.713444184053355	0.120036401920773	0.463264792719093
Merged-chr14-21890642-4	chr14	21890141	21891141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-41731.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	4.73059637718784	4.76499400863206	4.38598173721322	4.24936639737029	4.18866858595612	4.11257940985694	-1.18951736978301	0.00942740889628995	0.0965578335108929
Merged-chr9-100520761-4	chr9	100520253	100521253	+	753.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	-13897.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.80543581580294	3.7351705920348	4.14119436445127	3.85905456563999	3.58065753918797	4.0336831312261	-0.215587527049752	0.69827623458555	0.920299187876491
Merged-chr3-144706562-3	chr3	144706039	144707039	+	906.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 4 of 10)	intron (NM_001282037, intron 4 of 10)	13796.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.68570674411743	4.88306404423933	4.98039095510279	5.01154777697024	4.90385855460686	5.07838848910947	0.319425487418854	0.407427428084458	0.781591833659651
Merged-chr11-62544427-2	chr11	62543927	62544927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5166.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	4.11359956311572	3.8670496469837	4.21488752490108	4.60198134648573	3.96012274519639	4.14379282081023	0.542872417486534	0.302279306178622	0.698958713820873
Merged-chr1-58723271-3	chr1	58722730	58723730	+	847.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	RLTR31D_MM|LTR|ERVK	-7322.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	8.43539516293827	8.46040292088322	8.01489084755132	8.17434259857854	8.55185837029323	7.97676961921576	-0.0834743580865506	0.750827649757424	0.937652780035956
Merged-chr9-90235019-4	chr9	90234507	90235507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35762.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.79730359177418	7.31049758240851	7.36821848122493	7.41011568682793	7.40798278079975	7.33592414520098	-0.190442127977733	0.456117654433456	0.811360279461309
Merged-chr5-100628154-4	chr5	100627626	100628626	+	861.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46130.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.14282131369133	3.35115550977069	3.53187518104181	3.51750136840557	3.72747935056597	3.60237943845962	1.03074016685828	0.0893185934738055	0.397032086074383
Merged-chr18-39607366-4	chr18	39606863	39607863	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120118.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.84725073895918	4.95755908323575	4.72334035562988	5.38639720855522	5.09835438738141	5.06220018262961	0.720092860828866	0.0611518569728597	0.320706146161459
Merged-chr9-5299366-3	chr9	5298837	5299837	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 2 of 10)	exon (NM_009807, exon 2 of 10)	820.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	7.65661026784755	7.92113948464016	7.31412277965282	7.83976797738742	8.05784939289959	7.69775442996766	0.308437911060421	0.244322430154453	0.641614718441551
Merged-chr2-80026228-4	chr2	80025703	80026703	+	965.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12699.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	6.600092892094	6.7597059443112	6.58394479128125	6.76340854208546	6.87876782605513	6.89280862475427	0.298825013868723	0.238541573087511	0.635276123846678
Merged-chr15-79407980-1	chr15	79407480	79408480	+	617.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-4677.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	4.57071463096009	4.66379958376702	4.61061867807895	4.00804000824354	4.26107924716498	4.5182537602027	-0.883394803220579	0.0552193617411924	0.302063812488406
Merged-chr12-112620649-4	chr12	112620175	112621175	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	628.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	6.94437755550999	6.69230299051797	6.51737360584838	6.43346180914871	6.49293887090515	6.14661907233399	-0.576245670504472	0.0460827701259046	0.271482443050586
Merged-chr7-125496012-4	chr7	125495471	125496471	+	861.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4429.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	5.14944461608466	5.29183128616592	5.2429081124609	5.76516185131385	5.56513040442106	5.71296751214406	0.866380636791693	0.00945945833149441	0.0967194161768231
Merged-chr7-25240311-2	chr7	25239811	25240811	+	620.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2460.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	4.33095822918938	4.40819822727271	4.8424545936043	4.73962855378735	4.82070495290572	5.00748148921807	0.76079573361515	0.0804937537342454	0.375478544798365
Merged-chr5-122731483-3	chr5	122730987	122731987	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	23943.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.12795629765658	5.08792324621399	4.61581373079106	4.75593693606579	4.36476164874601	4.64104724810827	-0.878299459599415	0.0443155938100613	0.26503408160355
Merged-chr2-60878861-2	chr2	60878361	60879361	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MIR|SINE|MIR	2577.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.68974851363399	6.90845054477876	7.0316505800829	7.11448498780985	7.18240228208177	6.98285764442708	0.34071686683618	0.17896108831071	0.560321608436476
Merged-chr6-3346129-3	chr6	3345619	3346619	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53452.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	3.79309801276979	4.148532168841	4.00270681111659	5.84516591783245	6.07143926582001	4.94851141934995	4.27002423272975	3.74339389516151e-05	0.00124046323866427
Merged-chr1-155532944-3	chr1	155532442	155533442	+	842.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	2.95695282538496	2.91098157086788	3.02884426827815	3.10278691406639	3.06810074961078	2.85468922541399	0.253102303103345	0.711492716680254	0.924661173262022
Merged-chr12-12276081-2	chr12	12275581	12276581	+	674.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	13942.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.14129619176316	5.01996245009521	5.28051986202291	5.34406607923157	4.97316151210699	5.25097223609636	0.0972688592396988	0.793952094944776	0.950531747588938
Merged-chr11-6624105-2	chr11	6623605	6624605	+	833.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001130457, exon 3 of 13)	exon (NM_001130457, exon 3 of 13)	1962.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	3.18609643412684	2.70315257044891	2.8360082649283	3.2541150692678	2.75973162862816	3.15731040953759	0.652670140475137	0.40068709332603	0.776924744715187
Merged-chr1-97676792-2	chr1	97676292	97677292	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14774.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.47454316066968	4.69544785872463	4.83643881295636	4.47805504642829	4.43827384848085	4.5198994224514	-0.473703690589278	0.267680141824157	0.66495301679951
Merged-chr18-53862487-1	chr18	53861987	53862987	+	1000.0	f0_balb.idr	5' UTR (NM_152809, exon 1 of 13)	5' UTR (NM_152809, exon 1 of 13)	374.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.60562261792325	7.50225891053805	7.20990724301028	7.29474873733889	7.10209702137904	7.14188651159338	-0.409675254086968	0.0976605050304662	0.416781499454503
Merged-chr19-40683670-2	chr19	40683170	40684170	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	23900.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.81040846786243	7.79345965271417	7.78836843547569	7.67398405477171	7.99474021306902	7.73264370314597	0.024273179391871	0.91465660213965	0.980912729144991
Merged-chr19-5610020-7	chr19	5609484	5610484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037603)	promoter-TSS (NR_037603)	110.0	NM_001199249	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	8.66659966489893	8.78065602670356	8.44593208516713	8.73406883923136	8.95059310924928	8.50115604327873	0.144615734427735	0.532557900269309	0.851971173271146
Merged-chr19-3911892-4	chr19	3911385	3912385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 1 of 6)	intron (NM_001271443, intron 1 of 6)	889.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	7.15726542868789	7.00787710536297	6.80557316021901	7.25430592916843	7.42280816185454	6.73206097153272	0.267213764656656	0.359234855327282	0.745440547165336
Merged-chr5-105499591-3	chr5	105499092	105500092	+	996.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-19879.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.35458000841222	3.55756078446861	3.55262818624457	2.99039176596563	2.88654674303872	3.12665718776236	-2.24335442441063	0.00117147346855519	0.0203638502125069
Merged-chr2-75777331-4	chr2	75776797	75777797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54880.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.84028713907057	6.7307119817057	6.59691390319661	7.15753563342298	7.27411085749668	7.16732471848361	0.718102106548411	0.00359845035324525	0.048134675891238
Merged-chr4-144906041-3	chr4	144905531	144906531	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12894.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.71810744084756	6.42273664950895	6.17603236363045	5.88730005290003	5.92872057219035	5.85093802234185	-0.431548099940761	0.200416531739503	0.589383990811298
Merged-chr12-102002337-3	chr12	102001822	102002822	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016856, intron 13 of 14)	intron (NM_016856, intron 13 of 14)	26348.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	2.70291155204269	2.8144143737068	2.84177691612839	3.28968784641311	3.17649488630522	3.10362155306221	2.01173134323091	0.00506338579482643	0.0617129347027856
Merged-chr17-74570816-4	chr17	74570312	74571312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 7 of 72)	intron (NM_007566, intron 7 of 72)	42517.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	3.09478069823389	3.14041512442325	3.41389414957842	3.27717365845078	3.31396281628364	3.32256042003968	0.363945778119713	0.562440424195358	0.865744359036709
Merged-chr2-91966481-4	chr2	91966000	91967000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2937.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.45145908864728	7.6683321237602	7.32248855374381	7.54348983249414	7.82629836186947	7.58093977617998	0.242033791404645	0.320012099853282	0.713841334732408
Merged-chr13-23517698-4	chr13	23517198	23518198	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Met-i|tRNA|tRNA	-13346.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	6.63604560358568	6.79963338196552	6.25389758364918	6.94655225701257	7.2597202598814	6.71937339181447	0.635027243167742	0.0360684822117457	0.233555351585598
Merged-chr17-67247489-2	chr17	67246989	67247989	+	738.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	106970.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.82340471742232	4.93803342075372	5.0326509521482	5.74548180116072	5.8379683173811	5.68398965438435	1.65468330057373	1.40965698680612e-06	7.32176894869935e-05
Merged-chr11-69098809-4	chr11	69098296	69099296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-153.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.80463910155821	8.7615348139375	8.47841864074341	8.38110453781116	8.6499756687143	8.30817015948809	-0.322563285345927	0.155769386186892	0.52574774209382
Merged-chr19-23134249-4	chr19	23133747	23134747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6979.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	6.29148119305196	6.21300148687383	6.29212413337683	6.18245558316622	5.936354299812	6.38910934586668	-0.160381780147589	0.586924308124944	0.8757293350989
Merged-chr12-108792866-4	chr12	108792369	108793369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-442.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	8.99084233381578	9.16414547555516	8.65848097663437	8.72909420316091	8.813015125481	8.51430052338497	-0.365918088535094	0.118092187223926	0.45899732410914
Merged-chr6-97422744-2	chr6	97422244	97423244	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 3 of 23)	Lx5c|LINE|L1	36542.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.51892361838482	5.54533293658461	6.18219704996482	6.07753508107301	5.61117441316102	6.10487158358096	0.299744156488117	0.421764933406775	0.790695218522686
Merged-chr12-24980907-2	chr12	24980406	24981406	+	695.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	5974.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	4.9296033865454	5.29944101377845	5.06629103743701	5.9543668908884	5.90158199860493	5.70041495033063	1.42618080524034	4.55153451141031e-05	0.00145831376059079
Merged-chr19-34241401-4	chr19	34240884	34241884	+	829.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007392, exon 9 of 9)	3' UTR (NM_007392, exon 9 of 9)	8759.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	3.02787011742463	2.98397861412897	2.92402428756172	3.39220023811158	3.43641192333864	3.24917190216078	1.67891746549102	0.0116969359550507	0.112253151236917
Merged-chr19-55251340-2	chr19	55250840	55251840	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	2.01757526659918	2.01941586906369	2.24384332300887	2.02157125259657	1.85488355912382	1.84718155846648	-1.52923259420334	0.129079266570956	1
Merged-chr14-120280403-4	chr14	120279950	120280950	+	791.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	4781.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.13002008937666	3.65684127408719	3.90993248743765	3.7813809382687	3.79637817530418	3.82857489633169	-0.356610475004359	0.509677846123745	0.840476252363464
Merged-chr7-115132555-3	chr7	115132068	115133068	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181294.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.76272321830111	2.71344405709156	2.81544054252956	2.42692835569479	2.60372367469401	2.64458793952637	-1.13893253046988	0.146246002368802	1
Merged-chr11-97683788-2	chr11	97683288	97684288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-2164.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	3.55552377632653	3.74203552504957	4.03591931702896	3.94172130813481	3.70107255052467	4.01343167771267	0.32326672259105	0.559629180097301	0.865001482687873
Merged-chr15-10486633-2	chr15	10486133	10487133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	595.0	NM_001289447	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	6.82405286637601	7.16422523917659	6.48754461166808	6.65319319638545	6.61787972531226	6.36910333469712	-0.483011900684996	0.108368243033639	0.43977295973191
Merged-chr6-38531476-6	chr6	38530940	38531940	+	773.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3421.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	3.63466262870736	3.62750071182808	4.02358896410132	3.79128062642403	3.66629439910816	4.13364320318442	0.329810964143326	0.559441127690088	0.864958249988122
Merged-chr14-30549178-4	chr14	30548747	30549747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009388, exon 1 of 14)	5' UTR (NM_009388, exon 1 of 14)	116.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	7.45093593354954	7.55677277247405	7.80314525672383	7.57207706243778	7.80176214549077	7.52859828391062	0.057654601211743	0.811035429016087	0.955098218346624
Merged-chr8-119826596-4	chr8	119826102	119827102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13977.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.52610397115913	7.11798867514458	7.445484752928	7.28817096213869	7.4497608594266	7.16308998943348	-0.0898578941226277	0.724939525510487	0.929475409375828
Merged-chr4-119965244-3	chr4	119964737	119965737	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150559.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	6.75607392034928	6.74187546204716	6.88665043947595	5.27726560496664	5.70189228634662	5.62538561013419	-2.10573352965861	1.91423074482242e-11	2.93873269031704e-09
Merged-chr15-58046794-4	chr15	58046277	58047277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001042438)	TTS (NM_001042438)	-12483.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	4.38747882363783	4.19960017320639	4.05803742721661	4.7674931866657	4.32995689415485	4.37500923472212	0.717348626241636	0.134870554413264	0.490893184533435
Merged-chr4-45949715-1	chr4	45949215	45950215	+	671.0	f1_balb.idr	intron (NM_198660, intron 37 of 37)	intron (NM_198660, intron 37 of 37)	-15620.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	4.10004027262578	4.2221277570029	4.55512924240208	4.47519879918689	4.63930602913086	4.83929926197189	0.907708874605932	0.0481157242341888	0.278093094380402
Merged-chr7-45018533-2	chr7	45018033	45019033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	591.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	6.29058503815951	6.47060485754693	6.91108088698371	6.72979116085939	6.59280729023169	6.77425526042476	0.198123836113023	0.50214477402739	0.836318301786851
Merged-chr11-80163640-3	chr11	80163152	80164152	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9490.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.21195677347912	5.24687033026577	5.6552973494618	5.19707263626372	5.50316216845006	5.666826969932	0.176221939339737	0.634232542973798	0.896306748317281
Merged-chr17-23720104-1	chr17	23719604	23720604	+	721.0	f1_balb.idr	Intergenic	Intergenic	-6232.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	3.04688041761577	2.6933705737816	2.99231779009322	2.53522192396525	2.31930708827318	2.43360241173784	-3.33613686570625	0.000699615815141775	0.0136651720061777
Merged-chr11-115602103-2	chr11	115601603	115602603	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	1813.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	5.39347506014375	5.44066088648904	5.67617777732874	5.02590466798625	5.19940622891331	5.16330547900351	-0.730765734561836	0.0382774340531658	0.242149223195911
Merged-chr2-68861212-7	chr2	68860699	68861699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-242.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	6.65949224601414	6.41325034338651	6.65869888883872	6.62657010274677	6.72686973030921	6.76408648067543	0.202979810353356	0.439399168342388	0.801126452029189
Merged-chr2-103483537-4	chr2	103483043	103484043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	1610.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	4.94575005309861	4.85898826684789	4.78515296359188	5.00113092092883	4.84438040627972	4.99908093482603	0.166203977243564	0.663467349073953	0.907232705551985
Merged-chr18-53158816-4	chr18	53158320	53159320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17472.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.717540191666	4.29722757998594	4.86737012855127	4.99372666759477	4.55319439407455	4.96638648949298	0.471926719724053	0.29857221640239	0.695334237801508
Merged-chr13-3610134-4	chr13	3609645	3610645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360838, intron 1 of 19)	intron (NM_001360838, intron 1 of 19)	963.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	7.40198938917375	7.74805107664358	7.39610747060101	7.61157816263446	7.88429954098887	7.65470311135179	0.282643523779131	0.25135977003901	0.648833216107931
Merged-chr4-19870578-4	chr4	19870074	19871074	+	698.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51847.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	5.3864032080205	5.06777993174204	5.52508317517215	4.7199785778267	4.40166525902727	5.28957060580361	-1.03194733988379	0.0241113966486133	0.18260317578391
Merged-chr17-34031163-4	chr17	34030672	34031672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011306)	promoter-TSS (NM_011306)	518.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	8.17320458154351	7.68390502437774	7.80360029390831	7.89795504199805	7.89716791432512	7.62457021727583	-0.128943659317651	0.608012526007176	0.884838153491064
Merged-chr7-88287257-2	chr7	88286715	88287715	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311790, intron 3 of 3)	intron (NM_001311790, intron 3 of 3)	9130.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.99730933182629	5.06395407661272	4.89945959589082	5.26795068503803	5.53798774142843	5.25173970516776	0.766319430869694	0.0353550505864809	0.230873886258866
Merged-chr3-147071158-4	chr3	147070654	147071654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	218787.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	3.47605233445042	3.44181486833271	3.40356536087045	3.59565494216822	3.31671794862117	3.9719093311299	0.726367540530937	0.240415866830598	0.637492780345455
Merged-chr5-124492765-4	chr5	124492267	124493267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021430)	TTS (NM_021430)	9612.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	7.01738434849132	7.00638409638254	6.7767508312837	6.93301831464179	7.0863056355653	6.85089628443092	0.0337987154004628	0.89355441292668	0.975265071347118
Merged-chr1-171786277-1	chr1	171785777	171786777	+	1000.0	f0_balb.idr	intron (NM_001360898, intron 3 of 4)	intron (NM_001360898, intron 3 of 4)	19145.0	NM_001360898	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	2.6619943893474	2.61482547254429	2.85134349822834	2.45800502278349	2.41848215737624	2.4288005098728	-1.67607457582179	0.0410629303158192	1
Merged-chr11-23823411-4	chr11	23822918	23823918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52448.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.72990943398877	6.59051860112464	6.5985900696964	6.25531411208365	6.6657603217778	6.59043396780185	-0.196905709405769	0.478085784502574	0.823616627077609
Merged-chr5-148995262-4	chr5	148994771	148995771	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102383)	promoter-TSS (NR_102383)	-56.0	NR_102384	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	4.32061485163312	4.7102793451923	4.45427501714062	4.26738124590632	4.2295599982872	4.30141218697366	-0.639932212248703	0.160124650045681	0.532711682099917
Merged-chr5-115514876-4	chr5	115514381	115515381	+	932.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8205.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	7.65273489490882	7.50338960303581	7.4659439491207	7.3107384034788	7.2208027132045	7.37579234173921	-0.364453100716805	0.111641396107494	0.446313714155454
Merged-chr9-65543335-2	chr9	65542835	65543835	+	639.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	36752.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.74566502867564	7.78986360776032	7.56250464099225	7.6318580705034	7.87106424070249	7.48621520233489	-0.0374974172890632	0.875196386402537	0.970943409587731
Merged-chr12-75729004-2	chr12	75728504	75729504	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	B3A|SINE|B2	6725.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	3.32927857267738	3.53699065374656	3.64128261181242	3.27381022929225	3.2551958962228	3.16066470526865	-1.06742133964011	0.0874445542866339	0.392072770399948
Merged-chr7-66387704-4	chr7	66387176	66388176	+	833.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146191, intron 1 of 33)	CpG	665.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	6.4553115876419	6.75226289224869	6.75657020232516	6.88065711236892	6.75349697941951	7.0362337255216	0.358086979500274	0.180164515308441	0.561849644263301
Merged-chr2-120577997-2	chr2	120577497	120578497	+	750.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	PB1D9|SINE|Alu	10326.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	8.05126961741388	7.70483289025234	7.60340605019727	7.81138483892466	7.76549687133635	7.3733593177247	-0.193805417035287	0.457112130624131	0.812004739475898
Merged-chr3-87616241-3	chr3	87615757	87616757	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	4.76673289112688	4.63548782507376	4.62085590618381	4.28512765469945	4.42328339943476	4.72512350927437	-0.482056353393425	0.26744378654363	0.664707245929906
Merged-chr11-50210769-3	chr11	50210280	50211280	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	40.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	9.07599966634143	9.04012591804022	8.62334734040155	8.64419019709932	8.72301845426339	8.55778448364701	-0.397024191114495	0.0778178831028888	0.368299324112688
Merged-chr18-10726254-7	chr18	10725742	10726742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_144860, exon 1 of 21)	5' UTR (NM_144860, exon 1 of 21)	617.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	7.9471547619646	7.92771273862789	8.008130404758	8.05282455510678	7.41017428224248	8.02161533697569	-0.148076084843305	0.575236142678362	0.870967954417344
Merged-chr12-80944847-2	chr12	80944347	80945347	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	552.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	6.90949054668478	7.11041388114261	6.5939635413553	6.86482129953344	7.32500596259494	6.91373857981658	0.247234397458976	0.395604999150685	0.772934444820245
Merged-chr5-147076639-4	chr5	147076152	147077152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181730)	promoter-TSS (NM_181730)	-80.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.63047667167752	7.52573417729778	7.48416009119796	6.79183282457825	6.63286822704877	6.7401507245705	-1.25467253982713	1.30390166590439e-07	9.04125415138102e-06
Merged-chr16-5233565-4	chr16	5233081	5234081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145362)	promoter-TSS (NM_145362)	-40.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	7.38498989031201	7.61311119993033	7.17690017940749	7.41122818848049	7.23691147152018	6.88361687915659	-0.307566451129781	0.260036737148211	0.657603769401828
Merged-chr10-94035437-4	chr10	94034926	94035926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053072)	promoter-TSS (NM_053072)	316.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	5.69013504093605	5.58112582733388	5.42692432980857	5.92417508564038	5.98438403162771	5.45937928613084	0.448647916082642	0.189914581145943	0.576015618137772
Merged-chr2-80638847-4	chr2	80638350	80639350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027091)	promoter-TSS (NM_027091)	38.0	NM_027091	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	4.32207231144078	4.23631471400312	4.03994119504093	4.30523788402749	4.26693130078911	4.30202666834481	0.208981600793268	0.652175573059446	0.902896807825606
Merged-chr8-122476142-4	chr8	122475634	122476634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	-9.0	NM_153775	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	7.98191275893314	7.55888291071447	7.46359758468039	7.72797730662882	7.46185523041859	7.5614559553532	-0.156028423317892	0.54579988292853	0.85834429351586
Merged-chr11-87736472-2	chr11	87735972	87736972	+	747.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172448)	TTS (NM_172448)	-1079.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	4.24444094696516	4.63534047247723	4.73393001931497	4.53740729658118	4.6165118586035	4.68668446534269	0.156710156929476	0.723067980809825	0.928989158354973
Merged-chr4-103114740-4	chr4	103114226	103115226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	336.0	NM_001286222	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	6.52378666043836	6.77936302186048	6.9409373935238	6.81671848484539	6.55304315913377	6.83306061536698	-0.0290237955834023	0.916160283621708	0.981243905880233
Merged-chr7-80186171-2	chr7	80185671	80186671	+	896.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013659)	promoter-TSS (NM_013659)	-670.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.37361724337085	4.61939926717658	4.29342076971313	4.49213149813574	4.76379076400023	4.74390810409611	0.554908123194986	0.207538293998794	0.598324661043991
Merged-chr14-31164372-5	chr14	31163813	31164813	+	976.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	4328.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	4.18013174118808	4.37471291333765	4.51554660832302	4.24625099469732	4.31229135736609	4.14500934259415	-0.306722783105402	0.508655446343322	0.839881796236556
Merged-chr6-125448841-2	chr6	125448330	125449330	+	787.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	45930.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.61502762944121	4.40565428727598	4.49429657577154	4.08900218338411	4.00692265031861	3.95519098792072	-1.34165188418469	0.00442774504133714	0.0561845912332791
Merged-chr6-100647440-2	chr6	100646940	100647940	+	708.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_181590, intron 6 of 10)	RLTR20C2_MM|LTR|ERVK	23717.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	2.86269862817271	2.6579897774027	2.97795625224716	2.52244790865486	2.75120463755704	2.93614905507417	-0.467383942783375	0.547879992389343	0.859455567919717
Merged-chr12-102383618-2	chr12	102383118	102384118	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	56195.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.33661011111748	4.16491239470368	4.66601959343501	4.31602477024406	4.27872430839218	4.69459560183817	0.0984389943843745	0.837087620563192	0.962035641067236
Merged-chr5-110421808-1	chr5	110421308	110422308	+	574.0	f1_balb.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	26695.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.75945903911761	5.01634462128063	5.16684491786709	4.99927244655667	4.93915762100043	5.56229619913115	0.420137241535593	0.313602459454845	0.708121563861612
Merged-chr2-163418718-2	chr2	163418218	163419218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	752.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	6.87640607506922	6.94276191898776	6.88786623081865	6.92566990610521	7.05400939577166	6.85820022843406	0.0788230074454541	0.747121786541311	0.936552918354416
Merged-chr3-144570342-4	chr3	144569838	144570838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	-89.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	7.68737578844901	7.6310565096965	7.21853065511181	7.61133076813205	7.72827896220642	7.38363921922636	0.0741884933455157	0.773004091398355	0.943954628583841
Merged-chr8-119575194-4	chr8	119574702	119575702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	-2.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	6.76717011755812	6.84079826655106	6.63456922849332	6.74377108659294	6.10946273122979	6.14707001530063	-0.610478018482403	0.0501291816269401	0.285128781517153
Merged-chr13-55211524-4	chr13	55211041	55212041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	1759.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	8.41469832386803	8.51724766502204	8.29790930839161	8.24367381563181	8.18639787213852	8.24715833281522	-0.268272006771997	0.192799281737431	0.579818351365958
Merged-chr17-5582399-4	chr17	5581879	5582879	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	89779.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.3096528797035	4.32694297097904	4.38688016094658	4.02527272637401	4.02739030582504	3.88590895039023	-0.997750538903652	0.0372764888734002	0.238280870106621
Merged-chr7-80776317-4	chr7	80775826	80776826	+	914.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	RSINE1|SINE|B4	27005.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.81431034541666	7.99038893895224	7.78160862822571	7.95672174804897	8.36795761379255	7.70253800831888	0.258052783377727	0.324171604744449	0.717308554610576
Merged-chr12-91849262-4	chr12	91848741	91849741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-84.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	6.95688295328465	7.21145185710805	6.74154337457334	6.90610918277118	6.92787634667858	6.61450004270427	-0.251075021231516	0.362385659750471	0.747851834735049
Merged-chr14-55815546-4	chr14	55815053	55816053	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-9242.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	4.95624477904753	5.10547061772247	4.82373103088378	4.65699970547926	4.77954543509539	4.36258131485991	-0.788013519175734	0.0636841204692421	0.328860272341698
Merged-chr14-62760115-10	chr14	62759639	62760639	+	962.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045503)	promoter-TSS (NR_045503)	-362.0	NR_045503	71000.0	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	7.41439367096965	7.12766219284012	7.33039325223585	7.61832738752155	7.31735184513635	7.54231666475025	0.295177376103649	0.228041308597266	0.62304584487806
Merged-chr17-56257572-3	chr17	56257050	56258050	+	991.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010192, exon 1 of 1)	exon (NM_010192, exon 1 of 1)	757.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	5.61806444396894	5.65125956891068	5.50347556778734	5.96375935218919	5.43241269192099	5.70691671161423	0.21742739452081	0.525502576709057	0.849027787811941
Merged-chr11-62550014-4	chr11	62549525	62550525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1146.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	8.99734270412926	9.11918553695278	8.33030876316811	8.66501813132153	9.09553264298216	8.33329525100812	-0.168059419003652	0.579836399619251	0.872644657556124
Merged-chr2-167888630-2	chr2	167888130	167889130	+	594.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43697.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.94767434710104	3.54719647610215	3.93271697233917	3.54918900936878	3.39556057336711	3.76193230041981	-0.849740913760554	0.146111873870087	0.509862730173296
Merged-chr5-113640455-2	chr5	113639955	113640955	+	883.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359060, intron 2 of 4)	intron (NM_001359060, intron 2 of 4)	3148.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.55554072752563	4.63648393874034	5.01139029450633	5.38750706143679	5.29764180707822	4.96924248528473	1.08526428155756	0.00723499044279009	0.0800437554532214
Merged-chr12-3661422-4	chr12	3660857	3661857	+	765.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	88373.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	3.56911661452767	3.58868358416592	3.44955415463488	3.48984978130469	3.33426099220775	3.22431078485919	-0.692350342004642	0.24984322249725	0.646908996257932
Merged-chr3-40698953-4	chr3	40698376	40699376	+	917.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175515, intron 14 of 15)	L2a|LINE|L2	-9995.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	3.84020425131277	3.87408975916808	4.26606011040982	4.01430903493155	3.98956428560518	4.24899148376335	0.252971792162235	0.622752028405694	0.891249034616027
Merged-chr11-106796852-4	chr11	106796356	106797356	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166685, intron 4 of 18)	ID_B1|SINE|B4	7604.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	5.65197081362087	5.59681081077659	5.38701757475797	4.9960609203792	5.10199161729111	5.12268596924905	-0.964765602403676	0.00563489687792446	0.0666483868264274
Merged-chr7-141438307-1	chr7	141437807	141438807	+	548.0	f1_c57bl6.idr	promoter-TSS (NM_026646)	promoter-TSS (NM_026646)	-433.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	2.52871428507654	2.45600472735004	2.61003387177712	2.38773946605516	2.38134595185129	2.5600972931403	-0.546125424054268	0.494516410452536	1
Merged-chr10-80073267-2	chr10	80072767	80073767	+	929.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	2172.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.99375872984782	4.67726034836535	4.62047515020577	4.80923772173876	4.83686105162807	4.68805379739931	0.00501979498275499	0.990242609258872	0.997758582642691
Merged-chr9-63133388-3	chr9	63132870	63133870	+	871.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	13610.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	7.1212463687837	7.08229595470888	6.28676191858413	6.7897169662375	6.96049602846218	6.20857079726785	-0.296298627555446	0.410061156862099	0.783116615634315
Merged-chr6-47621203-4	chr6	47620697	47621697	+	970.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26167.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	3.28280009140363	3.22639858632289	3.30829680445876	3.23871634595162	3.31460861384665	3.20730929082748	-0.0539355171062953	0.930058881992331	0.984382342734132
Merged-chr13-59761076-3	chr13	59760573	59761573	+	720.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026921, intron 2 of 3)	intron (NM_026921, intron 2 of 3)	8716.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	2.64713534424344	2.60581374144465	2.73309034867486	2.51366353427708	2.75030642046019	2.5557389545445	-0.24534220703688	0.751709128078553	1
Merged-chr15-81417144-4	chr15	81416632	81417632	+	908.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177310, intron 2 of 8)	ERVB7_2B-LTR_MM|LTR|ERVK	-8859.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	4.52316679173633	4.51326267015454	4.28752706829923	4.45384883472553	4.41345931834013	4.15997633673917	-0.246414315253853	0.587593693793732	0.876017619062143
Merged-chr1-153767453-2	chr1	153766953	153767953	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18027.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	3.15888775905866	3.18246342943092	3.09111558458212	3.05556920653332	3.15750707654556	3.1632256395203	-0.0899469697963301	0.888376091893335	0.97401529899353
Merged-chr2-156313397-1	chr2	156312897	156313897	+	852.0	f1_c57bl6.idr	promoter-TSS (NM_020255)	promoter-TSS (NM_020255)	-693.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	5.61144552598932	5.56164995355486	5.97073965277394	6.59086347232254	6.27070723309853	6.39811274262147	1.22342524575771	7.83732468108925e-05	0.00230678497369676
Merged-chr19-5663180-2	chr19	5662680	5663680	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164481, intron 1 of 17)	intron (NM_001164481, intron 1 of 17)	527.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	5.68605974000254	5.4237453402652	5.89451048768659	6.236107709447	6.14884589818814	6.32920596672954	0.99209692925349	0.00155402111967899	0.0253941455864591
Merged-chr5-122421523-2	chr5	122421023	122422023	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-921.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	3.63803479853584	3.5722272191999	3.76084365782514	3.63898134617166	3.4943674555229	3.78058215979096	-0.0672648450782367	0.903770033520785	0.977858102400597
Merged-chr7-141459722-2	chr7	141459222	141460222	+	866.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028142, exon 10 of 10)	non-coding (NR_028142, exon 10 of 10)	-1372.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	4.34905836673281	4.61004654168354	4.77741486184786	4.82220510305093	4.39587700726165	4.57216814815684	0.0543233292435065	0.903668026155308	0.977858102400597
Merged-chr9-57439713-4	chr9	57439208	57440208	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357913)	promoter-TSS (NM_001357913)	28.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	6.45028303399328	6.73734914774508	6.69988217897385	6.53945190496741	6.8596201205684	6.71138501478929	0.12845782208354	0.637295262399504	0.897338937840938
Merged-chr6-123252974-4	chr6	123252463	123253463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9144.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	6.71753991835816	6.69513642113493	6.51723428600215	6.67033747277468	6.77806585580996	6.36498683507999	-0.0372746817053075	0.892163502057737	0.97498214708721
Merged-chr15-99394305-4	chr15	99393854	99394854	+	874.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1135.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	7.0771054376936	6.83539893048082	6.51912727844947	7.06622223807258	7.35727259952539	6.86940383064731	0.429302181338889	0.141155159345543	0.501979601184758
Merged-chr12-16900965-4	chr12	16900462	16901462	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	5984.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.86082493215546	4.84289301148649	5.02043234735344	4.87568535817112	4.92146310484872	5.08434570629107	0.118418265691363	0.755305159589069	0.939269406300643
Merged-chr6-47829346-2	chr6	47828846	47829846	+	862.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177882, intron 1 of 3)	PB1D9|SINE|Alu	1159.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	2.90169777084549	3.00338785321834	2.78720692578486	3.03419655838846	3.15984896779711	3.11026677673542	0.91482023908739	0.186845641320993	0.571645847815464
Merged-chr16-70408042-4	chr16	70407561	70408561	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	94112.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.86437264204285	5.33661663228971	4.74402665043791	4.64733355092841	5.1530368239739	5.10888355703312	-0.056840797683804	0.896765205605857	0.97587199430405
Merged-chr19-7483281-4	chr19	7482790	7483790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	1.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	7.63997823304925	7.8203908683409	7.74805268727634	7.8127090460082	7.92383599629022	7.87886108032641	0.193960969724096	0.370506621108026	0.754838358760403
Merged-chr7-19230339-2	chr7	19229839	19230839	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	1950.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	3.03349362229063	2.98750167648513	3.31122082543315	3.13790279457403	3.22020327147341	3.10076946126835	0.19971889757237	0.761772988426859	0.941318402670338
Merged-chr15-89428767-2	chr15	89428267	89429267	+	850.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 3 of 27)	non-coding (NR_004843, exon 3 of 27)	1160.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	5.6442457073539	5.81017092744987	5.87123349806559	5.52906386873006	5.51840024659848	5.86222734068527	-0.256821155304682	0.430572479936482	0.796367042714152
Merged-chr9-41141290-2	chr9	41140784	41141784	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	16778.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.75881022415729	2.84731071069047	2.70716452472961	2.96036012926789	3.0706709476635	3.08997975884272	1.30303883517994	0.0681668825546088	0.341651895496422
Merged-chr9-90210948-2	chr9	90210448	90211448	+	760.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	47970.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.62782847482017	3.41499058248999	4.1027210691768	3.85589679877165	3.82287642619777	3.99414502417098	0.481958460461493	0.410823058424529	0.783635895772505
Merged-chr13-104287052-4	chr13	104286564	104287564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081020)	promoter-TSS (NM_001081020)	-771.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	6.74276230107105	6.42134501581227	6.03748641130479	6.83835234772703	7.01292598454328	6.58716617737566	0.608885029650364	0.0541496582592685	0.298745840368467
Merged-chr15-66816655-4	chr15	66816158	66817158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	15171.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	7.24464157363036	7.19758385693245	7.0898363680025	6.58384771007737	6.9069023298392	7.01854632350644	-0.511216517992667	0.0484194483321761	0.279085997286209
Merged-chr7-127116380-2	chr7	127115880	127116880	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	MIRc|SINE|MIR	5649.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	4.83227335869996	5.16523598234091	4.78907391152686	4.70269738485461	4.79467457180662	5.19944409160951	-0.0900582462231395	0.829546968462845	0.960119959826635
Merged-chr5-109845107-4	chr5	109844589	109845589	+	964.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10947.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	3.29851415134218	3.12088679673093	3.47844756039038	3.26044901701975	3.69633469601785	3.6006083599365	0.88412074783936	0.163328835301764	0.537136550627445
Merged-chr2-11394844-4	chr2	11394349	11395349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	3651.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.55298241650123	5.79477710824925	5.69892950177055	5.97274986991278	5.65123185373012	5.86217621665919	0.259395681042962	0.419052526021035	0.788801788481746
Merged-chr11-117116488-2	chr11	117115988	117116988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1316.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	7.04534464135986	7.37522205190418	6.91867222380627	7.53974202300098	7.88742480992633	7.04615609289244	0.623181288358778	0.0442290253065515	0.264706087729809
Merged-chr11-43632764-4	chr11	43632246	43633246	+	952.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31184.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	5.79690466408358	5.7439432654139	6.01849289371529	4.80776576999258	4.90606380652428	5.62670592011041	-1.34774979123588	0.000917218556974595	0.0168476648319519
Merged-chr5-92439648-2	chr5	92439148	92440148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4449.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	3.55800973636613	3.34149171891664	3.83541470308001	3.74477665527523	3.82328300307432	4.16971650206709	1.09923957317861	0.060492915218159	0.318564324858752
Merged-chr1-33898540-4	chr1	33898039	33899039	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	9082.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	4.19764227194469	3.62650212960512	4.06186475889868	3.59117287986592	3.6865240423167	3.68611450594267	-1.05062010311426	0.065199336934244	0.332869458069983
Merged-chr10-99269900-3	chr10	99269395	99270395	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6664.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.91401413074493	4.46526259952376	5.07509524157194	4.7506773920118	4.61293341389267	4.71987282872172	-0.324366964771501	0.455271647248955	0.810850567748235
Merged-chr11-20743535-3	chr11	20743040	20744040	+	811.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	5.10638066703118	5.28369468438156	5.09828932170025	5.0984981123962	4.95457473007501	5.2282857570895	-0.170266387821428	0.641998451261849	0.899271200656464
Merged-chr10-84442865-2	chr10	84442365	84443365	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2394.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	2.97204846208089	2.86358430034145	2.76690614059727	2.75788034046857	2.64260786327915	2.90197012852327	-0.552641222596804	0.450315172859155	0.808270954382514
Merged-chr18-38425150-3	chr18	38424652	38425652	+	594.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	6245.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.28780559231784	4.00702846125906	4.04183836141491	3.90595524154635	3.80941978050517	4.15680725927504	-0.489946261855324	0.336042850723777	0.726090328603253
Merged-chr5-64808224-2	chr5	64807724	64808724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	4701.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.3462659413381	5.13288260000987	5.82008746655157	5.61849183809119	5.58055023113886	5.55487869049784	0.256749843680616	0.484915298031923	0.827217268924573
Merged-chr5-122637138-3	chr5	122636646	122637646	+	993.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6765.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	5.27992627428135	4.60558464848125	4.1558096361434	4.02381958198221	4.08995872224423	3.94820498100725	-1.91772327863132	0.000603946891370301	0.0122100779161134
Merged-chr4-88550373-4	chr4	88549866	88550866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7879.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	4.76670509192554	5.12712473885033	4.27270019913803	5.02566121606057	4.80541681483026	4.54631707413516	0.0696104031200991	0.887314579194162	0.973836995667151
Merged-chr11-88068301-9	chr11	88067744	88068744	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016686)	promoter-TSS (NM_016686)	-35.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	7.30049539184391	7.21024886701593	7.23579477860375	7.5010872731199	7.15498361208118	7.0935623192422	0.0236589934292243	0.924561148894032	0.982991542219399
Merged-chr5-30864087-3	chr5	30863591	30864591	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2284.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	2.91213482340433	3.26226179056668	3.01584359627878	2.78491717036967	2.94377821863422	2.90568559484183	-0.912123916811977	0.201612891265931	0.591134481710263
Merged-chr17-45586613-4	chr17	45586119	45587119	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199113, intron 12 of 13)	B3A|SINE|B2	5774.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	4.66337487152582	4.75226876810308	5.1522169676021	4.56311067160681	4.96856206993594	5.21487612175724	0.162480627845595	0.712263449043119	0.925002625244824
Merged-chr7-25679383-2	chr7	25678883	25679883	+	840.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1397.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	4.73807605017548	4.09802931853509	4.86909174774574	4.37945934018346	4.15767356197043	4.53469701832678	-0.610028367181309	0.228370197407211	0.623453111514788
Merged-chr19-23141077-4	chr19	23140567	23141567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-159.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	8.25445028875825	8.29399927575592	8.03748686577893	8.18390763561555	8.29142429915693	7.84599864381859	-0.106358890422796	0.652082850770777	0.902896807825606
Merged-chr16-21648119-2	chr16	21647619	21648619	+	862.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001881)	TTS (NM_001001881)	46546.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.57246856239338	3.18227312895546	3.52930656395458	3.53849938301805	3.12405315370202	3.49390365007763	-0.162125540157433	0.802084163861669	0.953161751100363
Merged-chr11-46448063-7	chr11	46447517	46448517	+	913.957153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6914.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	4.28165298979519	4.93914089662145	4.94213192258213	4.71323570453923	4.71901095792793	4.5496003372614	-0.204520296787918	0.658007567199962	0.904920006599558
Merged-chr1-127781067-3	chr1	127780566	127781566	+	776.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028399, intron 2 of 8)	MIRb|SINE|MIR	6902.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	4.19451298356036	4.2572839968242	4.0648801665441	4.26776821633255	4.40551166552112	4.49179589565053	0.559814629198425	0.223575407403281	0.618315634633302
Merged-chr10-79987156-4	chr10	79986681	79987681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	B3|SINE|B2	-1419.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	5.62039468908891	5.49103104951886	5.75801788479951	5.96167400535145	6.16641448102061	5.94260676329376	0.744478485593708	0.0162834380133136	0.140580235548018
Merged-chr17-36992464-4	chr17	36991958	36992958	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34-int|LTR|ERV1	-2954.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	4.0421530710783	3.98804152947523	4.01977283386722	4.16395458074794	3.99262213067502	4.22713576405922	0.312933391332086	0.517580675107165	0.844646834830098
Merged-chr1-85841058-5	chr1	85840559	85841559	+	833.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	ID4|SINE|ID	47042.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	6.12324751952527	5.89810569005584	5.91211216461536	5.69068678533654	5.76077454714282	6.24763818502915	-0.128262356612861	0.697743697222914	0.920107411504528
Merged-chr14-54908845-4	chr14	54908349	54909349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360406, exon 5 of 10)	exon (NM_001360406, exon 5 of 10)	4283.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	6.05571861771487	5.79797947069248	6.15162261309073	5.8496541377022	5.79845190990148	6.02299497625653	-0.205249021383744	0.506531533842274	0.838470324751826
Merged-chr2-29678171-2	chr2	29677671	29678671	+	574.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	PB1D9|SINE|Alu	58451.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.68722501261327	4.3166261386702	4.30160235815432	4.32015879055623	4.44074735559099	4.41532468273847	-0.154710035857511	0.734191830128964	0.932325051544019
Merged-chr6-124888154-3	chr6	124887681	124888681	+	652.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013488)	promoter-TSS (NM_013488)	19.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	3.71446968065209	3.96733269310359	3.73828606424029	3.73694065526785	3.47377160518975	3.47480906617972	-0.841536139732085	0.138280797136447	0.496960021384664
Merged-chr16-95810610-4	chr16	95810112	95811112	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88101.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	2.49759833312701	2.32822657263167	2.54313129633193	2.3729121551185	2.289396352798	2.42773002685208	-0.610512035222492	0.458813343498995	1
Merged-chr4-55351233-3	chr4	55350667	55351667	+	983.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	1125.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	7.2636688750741	7.52337217506406	6.63138228244404	7.83204287039182	8.10117397460257	7.0319433205297	0.786589122794317	0.182247606023216	0.564974338265291
Merged-chr17-13144976-5	chr17	13144418	13145418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13127.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	5.89215687724345	6.17041803152117	5.51580342533765	5.49700831934567	5.24628186967802	5.01440518063568	-1.16448082863816	0.00205764871262746	0.0316357786548976
Merged-chr6-24647357-4	chr6	24646851	24647851	+	691.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	17644.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	5.23359461064698	5.04484820711066	4.7380304634003	4.89284899680493	4.6584938347131	5.23002499738001	-0.201915308622351	0.634486733431881	0.896350313439852
Merged-chr18-69344386-4	chr18	69343889	69344889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-103.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.48378276031506	6.54790653104488	6.21125677514215	6.56759897773609	6.45591899087732	6.16063487494009	-0.0279739844721668	0.923406797646304	0.982699256056545
Merged-chr16-93884403-3	chr16	93883909	93884909	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 1 of 13)	CpG	508.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	3.8904404064171	3.6126928434978	3.56655960092807	4.22668609850795	4.19475998341822	3.97444764526513	1.34174339234699	0.0132625018849489	0.122344374372819
Merged-chr3-116109527-1	chr3	116109027	116110027	+	860.5	f0_balb.idr	TTS (NM_011693)	TTS (NM_011693)	20161.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.7704116506016	4.08876709567269	4.11868782461202	3.64525175383408	3.64715306869488	4.05340344177177	-0.663518649568509	0.228164995591256	0.623147576440797
Merged-chr9-61985290-4	chr9	61984765	61985765	+	687.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-38466.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	2.8899531366345	2.98802574378371	3.10685668744137	2.90366292558976	2.76399963185121	3.00742446961082	-0.504788496595845	0.469074012093656	0.818883765302854
Merged-chr12-71808248-4	chr12	71807728	71808728	+	814.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22840.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.50195753205618	5.90567473121392	5.43956694384102	5.63461210115419	5.464751769777	5.53332357937497	-0.186679710186667	0.588853136294134	0.876650937479947
Merged-chr7-80077181-2	chr7	80076681	80077681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-1924.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.62983980085859	4.90071068887435	5.00174692921166	4.80517688296838	4.75955083559649	5.30896450698967	0.267881772047544	0.528077797318871	0.850369588158163
Merged-chr11-50238678-4	chr11	50238189	50239189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-157.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	5.99210345120453	6.11581744337504	6.18193947515995	6.07044985737425	6.10077457872702	6.41196576926966	0.167932445838096	0.568727591627971	0.868718319030953
Merged-chr3-60589602-4	chr3	60589082	60590082	+	976.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	88403.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.82843605454128	4.74696420741523	4.84202838623073	4.68031812631063	5.08999427758227	5.04809410768636	0.334331047231884	0.40203068623355	0.77787096574423
Merged-chr11-70000551-4	chr11	70000031	70001031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-95.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	6.56178837635314	6.42600521465052	6.64956458811873	6.61342070875399	6.66347600797957	6.5583224392319	0.116522057180496	0.655217050576265	0.904167065613807
Merged-chr11-55131272-1	chr11	55130772	55131772	+	542.0	f1_balb.idr	intron (NM_172258, intron 8 of 10)	intron (NM_172258, intron 8 of 10)	20434.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	3.28750552350286	3.08974063176312	3.22657325804054	3.21366896759636	3.15867071166945	3.40763833887985	0.228061702990627	0.718574812340157	0.927402544945102
Merged-chr1-152618073-4	chr1	152617560	152618560	+	860.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7157.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.37304506181176	6.57247627187184	6.82992404331498	6.55014419016859	6.59033799194379	6.21089524651182	-0.201684287980229	0.493302248874365	0.831208279358962
Merged-chr12-112867500-4	chr12	112866993	112867993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6577.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	4.83048432140878	4.68398568225634	4.53570181123994	4.48571489842939	4.63568247969949	4.6447289598863	-0.251536988819154	0.546586608478133	0.858865780077964
Merged-chr1-86528295-4	chr1	86527786	86528786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008972, intron 1 of 4)	CpG-365	1729.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	7.94239692179331	8.17269032774955	7.93297822158248	7.5205357251908	7.97304966173427	7.9120379557298	-0.291269950765346	0.233475400797143	0.629826270159681
Merged-chr15-78301771-2	chr15	78301271	78302271	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	B4A|SINE|B4	3950.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	3.81612081103068	3.82012987474802	3.92731289906531	3.69254645802652	3.03715815800835	3.41922704320902	-1.57781454891259	0.0191001544171943	0.156718829380328
Merged-chr1-92935663-4	chr1	92935164	92936164	+	711.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015525, intron 1 of 1)	intron (NR_015525, intron 1 of 1)	1256.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	3.29242249294522	3.31917039811943	3.38293724396206	3.26623266686468	3.27156537884	3.60841533756798	0.208789223339625	0.733305632211763	0.932039456283818
Merged-chr10-60832148-3	chr10	60831636	60832636	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	-555.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	5.12355089472679	4.71548157779248	4.89636213880962	4.73926119494021	4.48256093924412	4.73593175702045	-0.628053232085923	0.132014435777415	0.485960766774337
Merged-chr15-96594109-4	chr15	96593610	96594610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	47852.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.32275116494186	4.8834151478912	4.75731113121237	5.40387605414934	5.39491181326831	5.10260176318029	0.594682051180594	0.138700979312586	0.497659297714682
Merged-chr13-75825896-2	chr13	75825396	75826396	+	840.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78B|LTR|ERV1	-13989.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.82483619801236	2.85861093637459	2.67035527183546	2.72723071030084	2.7229925130981	2.86833194550235	-0.106242252069043	0.884207450111941	0.973466734537782
Merged-chr7-81348453-4	chr7	81347942	81348942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357107, intron 9 of 9)	intron (NM_001357107, intron 9 of 9)	-3208.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	5.64999681807367	5.61413534162504	5.82316974223336	5.24613742328394	5.39547667637559	5.63729094527965	-0.500827871862646	0.136320022629809	0.493336840191226
Merged-chr5-142902743-5	chr5	142902110	142903110	+	790.320007	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007393)	TTS (NM_007393)	4144.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.16943445140226	3.98068729065532	4.06154175789298	4.28975485882564	4.06525420484918	4.22417562278716	0.336048689242248	0.48331216880532	0.826150563582312
Merged-chr9-41105313-4	chr9	41104862	41105862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-25856.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.51435695375162	6.44752613930704	6.04620201764629	6.68479947693756	6.82066860646324	6.52903051788743	0.520667545449451	0.0733036602868993	0.355717421657819
Merged-chr14-78849213-4	chr14	78848749	78849749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173758)	promoter-TSS (NM_173758)	71.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	6.03660083841907	6.48938580714001	5.86842449786586	5.96555753682029	5.66276280934956	5.36007329462153	-0.82842738584806	0.0227563288194362	0.175911241955374
Merged-chr3-75280603-3	chr3	75280111	75281111	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10533.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.97983247614052	4.02943238772944	3.90055034047054	3.90294565126635	3.96823892269872	4.0670462692451	0.00863994577179761	0.98608313674883	0.997033990984076
Merged-chr9-21162288-2	chr9	21161788	21162788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-3426.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	4.06030834890024	4.05461523937976	3.62317100875768	3.91938655118398	3.86510427324894	3.86337179489631	-0.170819174299445	0.751039386255901	0.937718261890661
Merged-chr8-70439038-2	chr8	70438538	70439538	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	535.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	3.8882300913214	3.71924200146801	3.87203907786794	3.88526676628895	3.38241308889589	4.03431999670045	-0.117537823446234	0.841661231650457	0.962988975342446
Merged-chr8-120106717-2	chr8	120106217	120107217	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5245.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	5.00965534393243	5.11771218661636	5.67012835640073	5.41575591059966	5.23501267584477	5.63315029935318	0.284393570932214	0.470846173331951	0.819784379107259
Merged-chr3-152404983-3	chr3	152404488	152405488	+	703.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	8304.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	4.64038226811348	4.39491231869832	4.44005672261924	4.28579030184897	4.10553870696695	4.28676316005712	-0.729004301550867	0.107679401190529	0.438375564793892
Merged-chr2-128808805-2	chr2	128808305	128809305	+	578.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9498.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.79256899249013	3.78635269250114	3.66700201767908	3.76747226926815	3.61577499547597	3.73763261842645	-0.164060102360485	0.759232704753755	0.940311236380535
Merged-chr5-135935476-2	chr5	135934985	135935985	+	792.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-844.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	6.04022763893478	5.60751693446328	5.99648297219386	5.46364346444657	5.68802270578447	5.6433559387376	-0.521688796900666	0.118318331876943	0.459597206424383
Merged-chr2-167715233-4	chr2	167714720	167715720	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24043.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.17509616430788	4.86062805623665	4.98889616456651	4.8707743123975	4.63216723836458	4.75493076504988	-0.587895102200046	0.138271443802594	0.496960021384664
Merged-chr5-9100643-4	chr5	9100146	9101146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081029)	promoter-TSS (NM_001081029)	-91.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	7.52664940047879	7.26646935583518	7.19378063466865	7.42161718446075	7.11396790062475	7.26333055208448	-0.107089288195241	0.669590726162174	0.909692012644768
Merged-chr5-144964102-4	chr5	144963597	144964597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	1733.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	4.09765237133289	3.57568190280499	4.0523820234979	3.92493864712196	3.65118213975302	3.8321282257835	-0.382292515478378	0.49706210726876	0.833442633454308
Merged-chr11-76529887-4	chr11	76529382	76530382	+	975.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-20463.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.40947566163131	4.48872927983137	4.04061216749775	4.13594543111034	3.95766566235608	4.00749247964472	-0.846147280015333	0.0863714162205007	0.389274878175464
Merged-chr14-51091612-4	chr14	51091100	51092100	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	523.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	5.93688966786817	6.24627199873432	5.52537537343178	5.81310565103837	5.67022269296004	5.98364595534322	-0.231285752380382	0.510540878640611	0.840913896104428
Merged-chr8-10026398-3	chr8	10025895	10026895	+	736.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033622, intron 4 of 6)	L1M4|LINE|L1	19762.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	2.54833480092667	2.6321261883664	2.51217746948054	2.6653657632126	2.49708319548578	2.71337920791562	0.322529639317528	0.676582882610942	1
Merged-chr17-24583858-3	chr17	24583370	24584370	+	811.894409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013630, intron 26 of 45)	Lx5c|LINE|L1	33920.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	4.46092464188912	4.15958625900605	4.23715738431542	4.29114723121995	4.27764112918758	4.47767720467927	0.134171211796019	0.77086623107504	0.943471821158735
Merged-chr11-118254359-4	chr11	118253898	118254898	+	911.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5806.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	4.51120458435096	4.31357890573701	4.42894300450288	4.21256380609144	4.41419290461486	4.17903089364646	-0.362416821100644	0.427491765047524	0.794365779350231
Merged-chr8-90977062-4	chr8	90976554	90977554	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 4 of 38)	exon (NM_001310530, exon 4 of 38)	44805.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.84559088274465	5.18398310284922	5.14912894744222	4.96016023877006	5.01247445689209	5.11480603737641	-0.0824758390020465	0.827536616845949	0.959467071709035
Merged-chr11-82041890-4	chr11	82041395	82042395	+	987.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-3817.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	5.70522473360501	5.41209821177632	5.10374334302855	5.90796484329971	5.87042256139757	5.66229270120781	0.696268471464331	0.0510675873286712	0.287985889965711
Merged-chr2-73462546-3	chr2	73462057	73463057	+	973.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-8668.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.01779811331501	4.57786151064933	4.53932011869539	5.10176496287303	4.58209842123265	4.89193554353335	0.302562805847261	0.499075658610782	0.834241540056632
Merged-chr1-72413470-4	chr1	72412975	72413975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106054.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	5.81707784955005	5.76240950435033	5.29092074147526	6.05992777382094	5.95439949671773	5.58738039253244	0.417924664068108	0.238193824409045	0.634837659879174
Merged-chr7-92903816-4	chr7	92903328	92904328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 2 of 8)	intron (NM_028243, intron 2 of 8)	28575.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	2.62671897210047	2.52355888532504	2.6463042761984	2.42804978725213	2.50219895552983	2.46730332420582	-0.787219062812959	0.319122519916163	1
Merged-chr9-59548998-4	chr9	59548491	59549491	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	9451.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	5.45772427627427	5.58249675371373	6.08329227013922	5.69242028203489	5.57162916573813	5.40175976733493	-0.293710530434427	0.415638982133644	0.78656116488557
Merged-chr4-101661790-1	chr4	101661290	101662290	+	577.0	f1_balb.idr	Intergenic	Intergenic	14007.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.49483509123463	2.38798637583726	2.87269062600735	2.52191699786929	2.44211797224372	2.46309959847418	-0.698783933950997	0.3986412023862	1
Merged-chr3-137919108-3	chr3	137918613	137919613	+	965.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019920, intron 2 of 6)	intron (NM_019920, intron 2 of 6)	558.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	7.99702272877496	8.28303343305327	7.73356225116325	8.38518837961504	8.51277968605941	7.79906696105203	0.345150900416046	0.224850259230353	0.619740315016701
Merged-chr18-75504442-2	chr18	75503942	75504942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-10203.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	5.06422218133873	5.3540284218658	5.62156729917251	5.31724218428486	5.09348679666425	5.63289380440177	-0.00425403751020432	0.991285799087121	0.998222399926149
Merged-chr7-121079423-2	chr7	121078923	121079923	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-4015.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	3.16980269461104	3.30280208179037	3.33702172525639	3.21305543551088	3.05816133004814	3.29799341090864	-0.345606607149894	0.584754905822588	0.874704026960161
Merged-chr10-80624409-2	chr10	80623909	80624909	+	893.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	1629.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	3.98449521552833	3.80799908298679	4.18166552141945	4.21515062982514	3.88718510486086	4.52951553046325	0.662149237397512	0.213088907708408	0.605830988037554
Merged-chr3-90051889-4	chr3	90051391	90052391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	255.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	8.31958967903381	8.44311958704902	7.95461487703805	8.42005376707653	8.54046019542353	8.26860711573687	0.216819542356391	0.360973912415234	0.746938274913623
Merged-chr19-9939031-4	chr19	9938497	9939497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39464.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.83381158019044	7.65458496925094	7.24853409746088	7.29579121818102	7.37435013347978	7.11356795613599	-0.497955552041875	0.0597366497710173	0.31639510847529
Merged-chr11-69368942-6	chr11	69368459	69369459	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	CpG	467.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	7.51300009566303	7.5428889589811	7.52184460093737	7.99532679200633	7.69181154514633	7.44279073219986	0.303851502442507	0.221027531189868	0.61561513090473
Merged-chr7-63931008-1	chr7	63930508	63931508	+	789.0	f1_balb.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7907.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.90887817230999	4.97975772201256	5.21159712377764	5.1641674058	5.52848016181986	5.4819815186605	0.761004613010304	0.0388589794296746	0.244396177551213
Merged-chr13-8842427-4	chr13	8841942	8842942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	28602.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.53418955987337	4.30455482287175	4.42756946797221	4.74701309144593	4.40145639346102	4.81026670800808	0.565511414810906	0.203124128087717	0.593047970473348
Merged-chr15-95802498-2	chr15	95801998	95802998	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	11655.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.61917696400297	5.14323929102692	5.14225903715801	5.54753186314916	5.62084577298002	5.31167755074088	0.341314855302377	0.358503831228283	0.74482243657584
Merged-chr9-53247560-3	chr9	53247048	53248048	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029936, intron 1 of 17)	intron (NM_029936, intron 1 of 17)	564.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	4.68477398897758	4.84690184297603	4.88509467391942	4.87207805319775	5.20986921819889	4.79765168214181	0.400756887972826	0.318972404085476	0.71299004032015
Merged-chr1-121431611-4	chr1	121431149	121432149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 1 of 23)	intron (NM_029955, intron 1 of 23)	582.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	7.9663037328616	8.27724036615903	7.84129430728921	8.1296364275423	8.07136340608156	7.6621681519691	-0.0989785843850424	0.698384838505872	0.920332843065367
Merged-chr11-73324200-4	chr11	73323722	73324722	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	415.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	8.43818161225605	8.7521985649044	8.04662668148718	8.23578668488257	8.67648309634144	8.07967409106526	-0.122046964452049	0.667725884700834	0.908813236401378
Merged-chr11-5491223-4	chr11	5490714	5491714	+	888.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29427.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	3.97731405350496	4.30561219717271	4.04980367146501	4.14714743234045	3.72598792526951	4.07084733188102	-0.393639424076758	0.451696368487964	0.809233899859178
Merged-chr19-21895731-4	chr19	21895225	21896225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	117385.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.87499934582363	5.01052202630955	4.87295727728045	4.75064537514483	4.47640518133215	4.82736224141343	-0.554720232226902	0.170396261220254	0.547769223545867
Merged-chr1-34463029-4	chr1	34462537	34463537	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 2 of 14)	intron (NM_011206, intron 2 of 14)	3291.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	4.54892322176865	4.31446594865402	4.61767720084394	4.87238809676274	4.54817184515779	4.90564121797417	0.676770418592396	0.11779344832506	0.45824289346073
Merged-chr7-29008383-3	chr7	29007900	29008900	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009109, exon 101 of 106)	exon (NM_009109, exon 101 of 106)	25546.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	7.07903432371981	7.00398414552128	7.18161612554534	5.17907235400912	5.38547474906317	5.27840473387072	-3.08997007286889	2.00260741204065e-22	2.10927794355796e-19
Merged-chr5-43787676-3	chr5	43787178	43788178	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5529.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	4.90950214170929	4.66890107226296	4.57255260151032	4.66282845371237	4.52014105952224	4.83617336831773	-0.146071701888969	0.728710920626206	0.930478966998914
Merged-chr9-110533025-4	chr9	110532500	110533500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 1 of 20)	CpG	403.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	8.16526497166906	8.10901382997606	7.93124718115825	8.25172223742912	7.97387115302115	8.16096253425092	0.0776524719002462	0.726072838937853	0.929743505822386
Merged-chr10-94474388-4	chr10	94473880	94474880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-40477.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.96367319489465	7.92190320724261	7.68168162088901	7.42468888621759	7.79131544008313	7.61692764236072	-0.348901552681974	0.145260186971211	0.508338649447163
Merged-chr6-145866164-4	chr6	145865689	145866689	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-769.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	8.20342662242129	8.50605765592008	7.84645105191756	6.24428050028005	6.36836281612683	5.79470819359868	-3.09171078348572	4.93349487730473e-21	3.76611230964011e-18
Merged-chr2-73003219-4	chr2	73002706	73003706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22760.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.27809467543936	5.30256022792375	5.27538233346061	5.20881280597834	5.26893026468237	4.95366743590137	-0.249349210253031	0.486411680460747	0.827845021635872
Merged-chr1-92473831-4	chr1	92473335	92474335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024197)	promoter-TSS (NM_024197)	-77.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	7.66761152936398	8.14706097203409	7.74377755939081	7.84295652231225	8.02540017644729	7.80021039550928	0.0297779873143369	0.904649632623851	0.978142219404953
Merged-chr11-103224505-2	chr11	103224005	103225005	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 13 of 15)	intron (NM_016896, intron 13 of 15)	-6073.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	4.38225715827851	4.60522545641715	4.9685803076892	4.92904805377158	4.9009892142782	4.62175766087071	0.387123968580945	0.3771183701135	0.759616521190546
Merged-chr4-141541451-2	chr4	141540951	141541951	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-2854.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	6.86286253343913	5.95594622984745	6.5810213999834	6.53862014280879	6.17041217674649	6.3351413354437	-0.27130407161783	0.43707030849419	0.799765712162923
Merged-chr15-36608034-4	chr15	36607549	36608549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	924.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	8.14705492866627	8.03855911214655	7.79915535961521	8.23224201071427	8.01353584055166	8.0310008588765	0.123684566826264	0.586664946544587	0.875615538765309
Merged-chr2-90576434-4	chr2	90575910	90576910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4237.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.87248820492537	8.13131284181214	7.82941730633949	8.07238664482671	8.29801821652717	7.9897447411479	0.249459685641622	0.281947822520067	0.679908771156903
Merged-chr12-4450671-2	chr12	4450171	4451171	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	MLTR14|LTR|ERV1	26511.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	3.04061754277374	3.14483351407991	2.79793864991754	3.08934683848387	2.7903183257938	3.2360253284415	0.189936902886736	0.796458887120446	0.951430675491237
Merged-chr4-135987254-4	chr4	135986758	135987758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-14.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	6.98921592549402	6.89631928279197	6.74229422664923	6.82510199830616	6.60537676059251	6.83156678191866	-0.208502107391421	0.418418877780343	0.788591657834186
Merged-chr13-41606965-4	chr13	41606442	41607442	+	981.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	726.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	7.78208851661822	8.07582044341211	7.68397113435874	8.03584131873277	8.41881507848544	7.79512293373002	0.361578098118334	0.175117936443613	0.554840197075627
Merged-chr15-57920358-2	chr15	57919858	57920858	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081396, intron 3 of 20)	intron (NM_001081396, intron 3 of 20)	8159.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	4.37909808066249	4.44376477020307	4.44942106703655	4.80944497253606	4.770197452459	5.00895899228586	1.04242267293717	0.0117424606071146	0.112521378257466
Merged-chr16-92861818-4	chr16	92861312	92862312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-35738.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.47631209874736	4.94496095588186	4.88915093206558	5.03922689494924	4.91238294110556	4.83671879130121	-0.439699358391891	0.284783093500657	0.682457480121006
Merged-chr15-82338049-4	chr15	82337547	82338547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355546, intron 2 of 8)	intron (NM_001355546, intron 2 of 8)	779.0	NM_001355546	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	6.23125229381191	6.45715251526704	6.44580062472951	6.18474530071244	6.44726737884512	6.1706730993819	-0.15796640313884	0.581098972336451	0.873228285171611
Merged-chr17-26676446-4	chr17	26676007	26677007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025272, exon 1 of 4)	exon (NM_025272, exon 1 of 4)	111.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	8.62620296993511	8.95342332424324	8.38977074455039	8.49642408348884	8.93302226311907	8.2471226408574	-0.115338367234362	0.676223463430378	0.912421384593547
Merged-chr3-136324858-2	chr3	136324358	136325358	+	907.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	L1_Mus1|LINE|L1	1208.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	5.61962207618785	5.32962643985892	5.56489773597889	5.75568791587878	5.54742007572467	5.75905053420797	0.331490784749228	0.316632042302311	0.710660560944371
Merged-chr18-38233166-1	chr18	38232666	38233666	+	572.0	f0_c57.idr	Intergenic	Intergenic	17032.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	5.22753748796872	5.10479439710267	5.27035883496508	5.37388915083476	5.581713399277	5.72309254570158	0.714216709840584	0.0385119712389401	0.243127893840881
Merged-chr9-66360455-4	chr9	66359960	66360960	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	10010.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	5.62772579358556	6.12010536177992	5.34174696328281	5.6459111192192	5.57579825740041	5.53446302066197	-0.303749456286094	0.410697733617547	0.78357384551602
Merged-chr1-165769262-4	chr1	165768747	165769747	+	920.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	5489.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.58247268067608	6.82698526278166	6.64854831889868	6.65241753548619	6.76756494905652	6.45958288580459	-0.0800533983207192	0.765703024315658	0.94223032859205
Merged-chr12-98263005-2	chr12	98262505	98263505	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3546.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	2.95724330263779	2.72751188057678	2.95938994345853	2.90172759246381	2.58840055870963	2.85279331318403	-0.5026970227681	0.500694841282135	0.835207416571186
Merged-chr2-125777218-3	chr2	125776709	125777709	+	889.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	5661.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	4.09908739178622	4.16736772921234	4.01457413227499	4.69776968768729	4.92941518398909	4.34434794280998	1.52422751984051	0.00139437709233047	0.023387085083377
Merged-chr17-86732269-4	chr17	86731775	86732775	+	990.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21589.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	3.52249128132062	3.61972107747567	3.82033802334296	3.31320294588233	3.23090915923717	3.37747453417883	-1.33702802101683	0.0262999334332059	0.19256994553944
Merged-chr10-52422615-2	chr10	52422115	52423115	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	5068.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	3.21496809771739	3.34004469309102	3.35175733000257	3.26851785136731	3.12474098473564	3.19591560698852	-0.441702961159839	0.478035938214157	0.823579401348397
Merged-chr5-32194494-4	chr5	32193989	32194989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-38219.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	4.8642750706605	5.30243964899542	5.37710205685962	5.17727928080091	5.44813171268957	5.25726251548312	0.222774814752785	0.559611647194582	0.865001482687873
Merged-chr2-166709426-2	chr2	166708926	166709926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	4406.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.13704475768365	5.86472900962983	5.91053321434564	6.13434262734156	6.2331808512964	5.94743999321386	0.241329359772327	0.423620681073645	0.792082736807957
Merged-chr8-46078645-3	chr8	46078131	46079131	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	intron (NM_207213, intron 5 of 17)	45515.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	4.28271190307935	4.44824160681432	4.28623619756314	4.4539853818286	4.27012154155579	4.60588783845742	0.246209475848002	0.58540791557136	0.874991904941749
Merged-chr19-24984615-3	chr19	24984082	24985082	+	923.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14947.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.64872301911592	4.33789773833429	4.67619982415712	4.29921364466076	4.57953240132271	4.37123635913839	-0.318384475524656	0.480456210507548	0.824543506620807
Merged-chr2-101733008-4	chr2	101732503	101733503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 7 of 8)	MTEb|LTR|ERVL-MaLR	54583.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	5.27032078857111	5.10461881659906	5.34358961621383	5.57419827597834	5.30168294075869	5.10899137230197	0.221380348572577	0.543651683095077	0.857551302506722
Merged-chr2-11512451-3	chr2	11512015	11513015	+	858.8214109999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ORR1C1|LTR|ERVL-MaLR	-10425.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.26911022068938	6.43753212941553	6.22364575322532	6.28749818318855	6.26396139632558	6.24242499759354	-0.0889505736744319	0.746781388990433	0.93630958811295
Merged-chr3-107099761-4	chr3	107099278	107100278	+	783.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1789.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.34247759957549	6.37897858772642	6.08015463296354	7.36551105401958	7.4003493510879	6.3755296453352	1.33750885241235	0.000133367751619677	0.00361474393380133
Merged-chr11-34038967-2	chr11	34038467	34039467	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-7961.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	2.56619910917313	2.45966944594901	2.68643023812616	2.65090770175379	2.38748741341419	2.69902285689447	0.0641883861371891	0.935786886966556	1
Merged-chr7-92740696-4	chr7	92740198	92741198	+	777.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015510)	TTS (NR_015510)	761.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	7.14246524166402	7.65571567716653	6.8310599803435	7.34454634260653	7.35476770088212	6.96710356375476	-0.0408026338504646	0.895015877068173	0.975639064862555
Merged-chr6-31170084-3	chr6	31169570	31170570	+	978.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48404.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.67589006533397	6.36733863618016	6.31278612232246	6.93183456931211	6.89103736718866	6.39400488030008	0.48002160789738	0.108984842990735	0.44106937375527
Merged-chr14-31392053-8	chr14	31391549	31392549	+	941.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	ID_B1|SINE|B4	25628.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	8.17983428677872	8.11785360217179	7.69986968793787	7.93187356512998	8.22314758897404	7.42142634076112	-0.156624589563635	0.591696435742312	0.877718735408096
Merged-chr2-27743615-2	chr2	27743115	27744115	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	33032.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.11360953520959	5.21480101003631	5.47019726984737	5.06911078690092	4.97754049693648	5.3942408070734	-0.243821543938823	0.518220804544032	0.84514310695073
Merged-chr1-82796294-4	chr1	82795786	82796786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27830.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	5.82162374500527	5.62714352864917	5.81461715778278	5.68339868945427	5.51978380157424	5.64465373431011	-0.259277888684109	0.412882424753173	0.78471875852647
Merged-chr4-105263814-4	chr4	105263317	105264317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106470.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.68267981802659	6.02145940412866	6.43781288104873	6.57404071437737	6.61246684524743	6.51541232184122	0.257363583740711	0.401204308687017	0.777334515839178
Merged-chr1-88244106-2	chr1	88243587	88244587	+	686.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 22 of 41)	intron (NM_001281466, intron 22 of 41)	17067.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.05417732734806	3.00369981205245	3.17921123265705	2.86865384945572	3.08497127702802	3.83461055825372	0.981167133326729	0.194644949494948	0.582088016014075
Merged-chr18-56427883-3	chr18	56427375	56428375	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360917, intron 1 of 13)	ORR1F|LTR|ERVL-MaLR	-4257.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.5357510973566	3.562005676772	3.46693232112032	3.26161583422358	3.53737310135363	3.42637496362105	-0.392983258138018	0.507989086763714	0.839550861029232
Merged-chr9-64023049-4	chr9	64022548	64023548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-989.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.53867960125689	5.55097375399584	5.96340534543456	6.16851823889495	6.21786047442439	5.66911797452355	0.646085031424708	0.0605154496740799	0.318573297259322
Merged-chr13-116972420-4	chr13	116971909	116972909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	PB1D9|SINE|Alu	53107.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.22692477886367	5.43841130956386	5.47305710786355	5.68821988462693	5.8672484184491	5.8278273371756	0.784205111211241	0.0159534801901417	0.138681276604817
Merged-chr1-52119898-1	chr1	52119398	52120398	+	766.0	f0_balb.idr	intron (NM_001205313, intron 1 of 24)	intron (NM_001205313, intron 1 of 24)	276.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	6.67590793429712	6.99624768481516	6.7298862488262	6.58359082519259	6.90697275871907	6.80391039817363	-0.0597671426487868	0.825482336595446	0.958821343666982
Merged-chr16-24027557-3	chr16	24027028	24028028	+	711.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38676.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	3.66447121832636	3.54585699860718	3.57742829633328	3.68537115634578	3.28992224249232	3.89636192404879	0.14813407915028	0.80652355072637	0.954191062388418
Merged-chr3-97665682-1	chr3	97665182	97666182	+	558.0	f0_balb.idr	intron (NM_182997, intron 5 of 7)	L1MB7|LINE|L1	7470.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	4.53863051388403	4.67375019882538	4.86425062650247	4.64373420084779	4.22514269667199	4.75110400180588	-0.348146708383551	0.440863773379377	0.802068236298565
Merged-chr9-124125763-4	chr9	124125246	124126246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	4203.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	7.60276235053934	7.71692992253792	7.30560606140526	7.57780337803325	7.89969122694826	7.60820615568797	0.214673846108374	0.390946358522308	0.770065208435106
Merged-chr17-47511272-4	chr17	47510763	47511763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	6212.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	6.41757181604167	6.51553036607787	6.25721566046081	6.2680157619994	6.37532730328383	6.35738728500823	-0.121161714757994	0.657885203303705	0.904859102731141
Merged-chr9-46192841-4	chr9	46192337	46193337	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-35793.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	4.7523812794391	4.98494515082717	4.82109125795132	4.72450931098418	4.90488803890873	5.22190248285446	0.215575954934407	0.594922580013654	0.87924603206665
Merged-chr3-90001917-2	chr3	90001417	90002417	+	690.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045749)	TTS (NR_045749)	3157.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	3.50705975920952	3.59588866469853	3.6577361186882	3.4293914602282	3.44760678370533	3.82163677718696	-0.0578673413011865	0.920720390129978	0.982463724790289
Merged-chr11-84878820-2	chr11	84878320	84879320	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077636, intron 1 of 1)	intron (NM_001077636, intron 1 of 1)	1375.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	2.8702229687575	3.07669220702756	3.1192417410701	2.77499470477123	2.95936176808007	2.95993440492736	-0.578253487868096	0.409781422012111	0.783037226945994
Merged-chr12-84770532-2	chr12	84770032	84771032	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	2580.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	4.30353636476376	4.15653406355987	4.33051986920468	4.4797267538698	4.70738726012928	4.35351106986961	0.699382697740535	0.120917785308278	0.46502713440244
Merged-chr19-42128180-2	chr19	42127680	42128680	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027106, intron 1 of 2)	MIR|SINE|MIR	813.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	3.81229225156064	3.81625208519713	3.68827036271758	3.36407446273031	3.20518487874352	3.80788166000654	-1.06415155859353	0.08712188740442	0.391280460797426
Merged-chr10-45277198-4	chr10	45276686	45277686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12119.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	5.96682744757263	6.21402169173895	5.85329124761204	5.6207765148667	5.77328684858027	5.76095674928537	-0.546567872392801	0.0801809309287965	0.374652567990256
Merged-chr8-77436276-6	chr8	77435725	77436725	+	758.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-80831.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.49667810506627	3.47672606564576	3.22561039592066	3.44087909202748	3.26601959416784	3.35757043150168	-0.223530266775245	0.715002389178952	0.926234879792039
Merged-chr16-24777271-4	chr16	24776748	24777748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	55393.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.53012004172977	5.6448522378274	5.66683064498751	5.43353416205404	5.79512751060588	5.44425760801157	-0.0562022159939339	0.867505155073052	0.96935413537256
Merged-chr1-52146844-2	chr1	52146344	52147344	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 15 of 24)	intron (NM_001205313, intron 15 of 24)	27222.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	1.99219421710471	1.92469951782255	2.0704144374488	2.23076878428723	2.09009180804315	2.77461338944938	3.04290101534143	0.00474191016329754	1
Merged-chr10-44729178-4	chr10	44728675	44729675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-270427.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.13228123905636	6.78750145656269	6.90548073520241	6.74639323265827	6.93296746447301	6.65295582856366	-0.247817836453893	0.351676865007191	0.739403630741215
Merged-chr10-75859633-3	chr10	75859127	75860127	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010798, intron 2 of 2)	intron (NM_010798, intron 2 of 2)	623.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	7.48605988274159	7.48056952579098	6.90121281028815	7.0878905521931	7.19292288894469	6.7846111523281	-0.427465844977912	0.137132719767538	0.494798115711257
Merged-chr2-29671296-2	chr2	29670796	29671796	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51576.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.22089861282634	3.16626834446661	3.41431681689256	3.1917708474307	3.07532643095665	3.48404873319727	-0.0526365969780033	0.935049077583622	0.985758101267319
Merged-chr16-76354976-2	chr16	76354476	76355476	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	Lx9|LINE|L1	18073.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.11201610323654	4.70531424056714	4.49051514926375	5.28748010779823	5.04220742384544	4.51300263283886	0.411139296059599	0.388674238705219	0.768537013240746
Merged-chr5-136174484-2	chr5	136173984	136174984	+	741.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3828.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	4.3205305871615	4.19396431562269	4.34590907401705	4.24411151168459	4.24248868696558	4.72203193522249	0.32710010190853	0.489005919775178	0.829458075453696
Merged-chr13-85489901-4	chr13	85489395	85490395	+	954.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200409.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.72851802423482	3.77148577839806	4.03096102400622	4.08548852130808	3.95422614393088	4.14416236944052	0.664397306810147	0.193273257949601	0.58042547704774
Merged-chr7-13038146-4	chr7	13037626	13038626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	-148.0	NM_145578	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	8.05597046312781	8.2348785981559	8.0058759136695	8.05871529227315	7.92438301016538	8.15282494995005	-0.0875234915329205	0.689091206036582	0.917289004157739
Merged-chr13-45101956-4	chr13	45101426	45102426	+	959.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99830.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.18719806513575	3.21064895182064	2.99665564603178	3.24827886045983	3.14069604621428	3.25101378678532	0.30066402433872	0.641632471819721	0.899106680956137
Merged-chr11-88242010-2	chr11	88241554	88242554	+	987.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	37666.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	4.23156747709203	4.23717530793227	4.59810086110189	3.27482393927784	3.15792050061453	3.42186594000203	-4.50087419174363	1.28391722561125e-08	1.13289697252026e-06
Merged-chr12-85338994-1	chr12	85338494	85339494	+	1000.0	f0_balb.idr	intron (NM_145138, intron 1 of 21)	CpG	368.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	8.0803005700805	8.05039142665619	7.88462527474741	8.16262079973681	8.12472182646872	8.00323720916237	0.126039133754833	0.554778152552767	0.862962911166736
Merged-chr11-115742722-1	chr11	115742222	115743222	+	725.0	f1_c57bl6.idr	Intergenic	Intergenic	-22711.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	4.52368132957666	4.68174353567415	4.59306316204786	4.88460103371405	4.7021864542499	4.57550487822502	0.303811947854891	0.462620489849506	0.815351661567396
Merged-chr11-34827129-4	chr11	34826630	34827630	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 2 of 11)	Tigger7|DNA|TcMar-Tigger	6511.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	4.7725861480808	4.85883664190781	4.16291631803678	4.55119657718846	4.56389362792629	4.12630322088922	-0.499000013473617	0.328779365457388	0.72090949301619
Merged-chr17-33890788-4	chr17	33890301	33891301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195298)	promoter-TSS (NM_001195298)	-168.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	4.08092949769185	3.87912499455866	3.66699833281905	3.74846891307882	3.50001102982117	3.94451050833734	-0.505696227894885	0.372989703241658	0.756913572844227
Merged-chr5-100039007-4	chr5	100038513	100039513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	209.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	7.66816697641581	8.03157448950358	7.79214589737178	7.6084153560603	7.82091435935094	7.94345970028936	-0.0661899497318104	0.783154213310118	0.946954817715734
Merged-chr13-119713593-1	chr13	119713093	119714093	+	1000.0	f0_balb.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	23242.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	4.66888287966157	4.60445534371243	4.91872546158471	4.15544455693663	4.43945270359201	4.50323899747453	-0.877814984616871	0.0491394992417792	0.281713477528241
Merged-chr16-35775997-2	chr16	35775497	35776497	+	934.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	5611.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	5.46557327612463	5.42977296426091	5.55297204407451	5.40459862909853	5.13994439154254	5.18990713514405	-0.455780984175895	0.185028663720524	0.569091204638575
Merged-chr4-3651738-4	chr4	3651249	3652249	+	913.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-4757.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.58384232948082	3.59371823480824	3.82636510180251	3.57248203585903	3.36994130015842	3.70055936996048	-0.423757737939151	0.461072997542384	0.814864376583716
Merged-chr12-40564437-4	chr12	40563923	40564923	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118370.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.60790111350722	5.65146843659213	5.80841959715817	5.36577655397819	5.34621879435479	5.95868388342736	-0.209959775062656	0.560385726660073	0.865228127283998
Merged-chr2-4648424-2	chr2	4647924	4648924	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026045, intron 1 of 9)	intron (NM_026045, intron 1 of 9)	3711.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	2.69714307750219	2.71819626903734	2.9454173475651	2.59172862153448	2.47666916142046	3.01709354140061	-0.396596850971848	0.62092515691589	0.890423625683466
Merged-chr5-97061688-4	chr5	97061189	97062189	+	977.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49907.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	5.22978627347766	4.98729179190609	5.10169305460783	5.23144829532801	5.5252594150862	5.47900255827465	0.622221979588109	0.082268891090494	0.379290219961094
Merged-chr18-70568930-4	chr18	70568422	70569422	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311071, exon 1 of 3)	exon (NM_001311071, exon 1 of 3)	630.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	5.31149305667265	4.93931101639108	5.07151390040061	6.03325579411447	5.28660299651531	5.4087519968418	0.978251444659977	0.0159278040269558	0.138588384134156
Merged-chr10-10744326-4	chr10	10743858	10744858	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114333, intron 5 of 9)	intron (NM_001114333, intron 5 of 9)	-6688.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	4.58570235468771	4.43847270566413	4.68778148989467	4.61110566268346	4.44770648909183	4.59715005117985	-0.046622985187114	0.912296979700583	0.9803366405399
Merged-chr1-189867653-3	chr1	189867153	189868153	+	674.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	54638.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.49043515354491	3.68396768586198	3.62186703788941	3.1576830968378	3.05933724501255	3.37297481112267	-1.65681518404581	0.00910596135035811	0.0943337689293573
Merged-chr10-12813667-3	chr10	12813170	12814170	+	708.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	48065.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.39215056648639	4.42216903952435	4.15444444633774	4.31791150681302	4.18083637910796	4.12493451862398	-0.334311447480795	0.472226500383592	0.8205191831757
Merged-chr19-42006273-2	chr19	42005773	42006773	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	24510.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.04957209818995	6.01986426211455	5.82942567799394	5.56303207825225	5.92049330611854	5.81503900258601	-0.347516329808813	0.269856766205583	0.666905044122659
Merged-chr7-141215768-4	chr7	141215257	141216257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025886)	promoter-TSS (NM_025886)	-103.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	3.53640949180827	2.89075901338222	3.26612621331998	3.00864500918455	2.9611860171166	3.16701581674515	-0.915210345922481	0.200898373321212	0.590245819261728
Merged-chr6-67036596-4	chr6	67036090	67037090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	-9.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	6.16665684797624	6.18866231365758	5.93321915836401	5.62900445194654	5.7301587997328	5.65611167909657	-0.766400724126168	0.0116601394295099	0.112034281945803
Merged-chr5-142458487-2	chr5	142457987	142458987	+	898.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5444.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	5.92840310280611	6.05678711091735	6.38409534515079	6.12402931690849	6.17090958569618	6.17745780286971	0.0548229479333896	0.854919952176324	0.966038421653227
Merged-chr1-157013195-4	chr1	157012727	157013727	+	908.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73601.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.82081619181283	6.55163683245944	6.39022535867235	5.57466108590484	5.66975384130563	5.86360693959859	-1.54208846553158	3.8875707893648e-07	2.35770401050631e-05
Merged-chr10-41450353-4	chr10	41449890	41450890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	32.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	7.46989673148122	7.80657852545377	7.43464737805834	7.72122936490788	7.60010059643833	7.39312817887055	-0.00664022340030412	0.978719740873521	0.995160277495735
Merged-chr11-49088233-5	chr11	49087777	49088777	+	811.880005	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	1260.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	5.94502381708451	6.15230505902026	6.1250891664103	6.37584911535713	6.08527589668582	6.26790021396175	0.284269139524542	0.33015081587722	0.721729477117192
Merged-chr2-127323155-4	chr2	127322657	127323657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13002.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	3.78948289171323	3.94989482956943	4.0511354688558	3.95055331885179	4.20963250832272	4.33726629700453	0.709020395582454	0.159333526963949	0.531418314558934
Merged-chr19-12442734-4	chr19	12442237	12443237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	14832.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.96876807029217	7.79662414598226	7.70186199183458	7.87432867282347	8.17082119656098	7.7583363884878	0.176223023126781	0.462036102886728	0.815107818354545
Merged-chr5-127615616-4	chr5	127615123	127616123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1769.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	6.93858644816755	7.10988607634741	7.10233202575333	6.9641775106244	7.27770071598743	7.26694555929345	0.192131594469103	0.442191807626864	0.803131781747343
Merged-chr13-86020474-1	chr13	86019974	86020974	+	664.333313	f0_balb.idr	Intergenic	Lx|LINE|L1	26321.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	3.43781465728666	3.25287271754523	3.25674406908687	2.85241250132646	2.87053806339485	3.0973488712305	-1.78345367819556	0.0104187815195693	0.103402429947557
Merged-chr5-65990256-4	chr5	65989749	65990749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 5 of 6)	intron (NR_027961, intron 5 of 6)	14036.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	5.14413419098215	5.02484741310926	5.28698429858812	5.46552372793908	5.33753866226177	5.15464363241792	0.373802011280374	0.296806207026583	0.693424948467673
Merged-chr13-113919346-2	chr13	113918846	113919846	+	687.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	124838.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	3.31198863355761	3.69090899366908	3.83255194194076	3.72426734743363	3.53970718305229	3.59932237242174	-0.00957326291564271	0.987146034351523	0.997161899445921
Merged-chr7-73428114-2	chr7	73427614	73428614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081345, exon 39 of 39)	3' UTR (NM_001081345, exon 39 of 39)	-52340.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	2.91852580044049	2.8704634062048	3.21036485224084	2.70052026271818	2.86765129233183	3.06375417465742	-0.573632497482559	0.430911989161765	0.796614699034595
Merged-chr13-89379351-2	chr13	89378851	89379851	+	569.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-161285.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.11025029021156	3.35855267648654	3.46949018927661	4.14777800291462	4.36028165803775	4.38073646755928	3.65425221065034	5.16775918962698e-08	3.99333654578842e-06
Merged-chr3-14893923-4	chr3	14893418	14894418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	7630.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	3.27243786738906	3.11344836005758	3.0215164181804	2.73887103308609	2.87408359193776	2.84516672089998	-1.56388043623231	0.0306231036907927	0.211606684245219
Merged-chr5-140701914-2	chr5	140701414	140702414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347517, intron 1 of 22)	CpG	464.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	5.50464677716946	5.51740095214063	5.29808440274401	5.49945654236935	5.24722927445657	5.15771750433259	-0.269723891334035	0.441200862970334	0.802418338528898
Merged-chr6-97463119-2	chr6	97462594	97463594	+	849.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	MER45B|DNA|hAT-Tip100	-3808.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.78901268279027	7.69863099673538	7.93977248169564	7.92061980436704	8.11960852263845	7.97351090394154	0.288479991128078	0.191232514778124	0.577822466760773
Merged-chr17-26715542-4	chr17	26715026	26716026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029870)	promoter-TSS (NM_029870)	-124.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	7.06442646188526	6.94377360353858	6.68262591292644	7.2464850872196	6.66063611332361	6.36191257808938	-0.142740285004152	0.662927028901335	0.90692994613967
Merged-chr4-133130480-4	chr4	133129997	133130997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-136.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	7.62698141801475	7.61443252220492	7.71797130567918	7.80889561773176	7.82840854756905	7.66707328423254	0.177598157503096	0.41477442272224	0.786019635735451
Merged-chr2-117272196-3	chr2	117271694	117272694	+	730.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026620)	TTS (NM_026620)	22455.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	2.63585057489327	2.70342124785534	3.04788380471305	3.03994156769566	2.62381573539407	2.76356590416656	0.0839990415687741	0.913721668534206	0.980796798598326
Merged-chr13-43561246-4	chr13	43560753	43561753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1062.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	7.40030735329155	6.90409354161495	7.02304390808845	7.28555124612206	7.34570034348892	7.10774630617606	0.184682814597972	0.489115692274563	0.829459847891797
Merged-chr12-31948089-2	chr12	31947589	31948589	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	2156.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.61291244061483	3.26087379873766	3.57831145786803	3.68578349435059	3.67722358354841	3.85039416727633	0.857921577050215	0.140476385466724	0.500760820920022
Merged-chr17-29111494-3	chr17	29110993	29111993	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17724.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	2.91988763394785	2.77073646315185	2.76579023746846	2.33760158415619	2.45532685122762	2.39325639584235	-2.95346644220167	0.00209412670882239	1
Merged-chr12-102419067-5	chr12	102418494	102419494	+	807.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	RLTR25B|LTR|ERVK	20819.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.33838728208592	6.53367340340785	6.45353252797314	6.26238437044563	6.42642590535026	6.28404513628436	-0.184908077089284	0.498421458242798	0.833865667012175
Merged-chr7-126822184-4	chr7	126821660	126822660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026884, intron 4 of 7)	intron (NM_026884, intron 4 of 7)	-1143.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	5.37049285198948	5.21852170282939	5.57610722375983	5.29123572462241	4.76076348839469	5.06884253059578	-0.686462204057347	0.0782112903367075	0.369279069757519
Merged-chr18-64488413-2	chr18	64487913	64488913	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007998, intron 1 of 10)	intron (NM_007998, intron 1 of 10)	685.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	6.77293065541296	7.23473689694915	6.42069847479857	6.79672497581989	6.7461419517494	6.29076593548171	-0.352410582501637	0.288080305126428	0.685467048030297
Merged-chr15-95906514-4	chr15	95906017	95907017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-76445.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.31130320389627	5.0489715818524	5.25160821713025	5.19397042633598	5.21301276921773	5.34569236234089	0.0847697937149704	0.811492377420818	0.955303137357202
Merged-chr15-83149759-4	chr15	83149278	83150278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178627)	promoter-TSS (NM_178627)	133.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	8.27949491046186	8.27385471308492	7.76161753877178	8.10660331470408	8.29721864661079	7.66585327260112	-0.106462574045426	0.701315113899358	0.921233461961292
Merged-chr3-31097975-3	chr3	31097446	31098446	+	828.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011386, exon 2 of 7)	exon (NM_011386, exon 2 of 7)	2888.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	6.62196272897888	6.50752675804357	6.65055983303236	7.09888232847866	7.34038796058446	7.02292113227631	0.891657187959195	0.000471992222338739	0.0100443807765631
Merged-chr2-30061933-4	chr2	30061526	30062526	+	901.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023871)	promoter-TSS (NM_023871)	30.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	6.30537285436095	6.11587318672266	6.67945668714208	6.40592453080086	6.18556312436577	6.21244522900908	-0.173740428713864	0.570103019924926	0.869072933274727
Merged-chr2-150135438-4	chr2	150134959	150135959	+	827.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	1219.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	4.87108301995958	4.99173948366838	5.22923485848353	4.81928869957359	5.09289889657143	5.13634020245989	-0.0142569528958652	0.970639475724875	0.99351865396095
Merged-chr3-27238275-2	chr3	27237775	27238775	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	55271.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.21890775241033	2.79199607348417	3.2343527454414	3.19442321151481	2.96029863019473	3.1940914795759	0.0970600782059705	0.89085334004278	0.974581703799143
Merged-chr16-4960611-4	chr16	4960109	4961109	+	889.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028301, intron 1 of 16)	intron (NM_028301, intron 1 of 16)	3628.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	4.51209522148242	4.63461267253015	4.67661998442068	4.37050788399967	4.72233454953893	4.70376544449375	0.0100924032841044	0.98116247729261	0.995687678606673
Merged-chr6-3355058-3	chr6	3354565	3355565	+	885.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	44506.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	2.55748910828278	2.34958686042496	2.41637920538542	2.55003452718699	2.82279669578804	2.68715331660494	1.46671659503986	0.0753956932836474	1
Merged-chr16-36674600-4	chr16	36674093	36675093	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8516.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.02471382142086	5.19443428075833	5.43416430253175	5.19643493948466	5.12949100792341	5.16386712035713	-0.113686255230933	0.755447514293659	0.939315847504439
Merged-chr4-89137631-7	chr4	89137072	89138072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024433, intron 1 of 7)	CpG	202.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	6.1015269326022	6.23521038706556	6.03037190345141	5.57943289962958	5.94670334094871	5.80146037640008	-0.589940211286009	0.0573561156580468	0.309058908928556
Merged-chr12-85620105-2	chr12	85619605	85620605	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	20087.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.40980507917523	3.1317514370833	3.30230129365929	3.43915994061527	3.4763093690796	3.1953890665123	0.376116713431007	0.551106688195325	0.860990138377474
Merged-chr2-6696455-3	chr2	6695937	6696937	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	Lx8b|LINE|L1	25225.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.91229161894724	5.02131743050231	4.6833499089345	4.98285800128564	4.97180341801619	4.6650791149491	0.002780842601324	0.994506614515397	0.998946345565713
Merged-chr4-108300481-2	chr4	108299981	108300981	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	609.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	6.5969317949138	6.39273873262782	6.47120387914317	6.64115327370145	6.32398882378418	6.38114392616764	-0.0562763761377813	0.83921237379718	0.962725890398731
Merged-chr2-167252711-2	chr2	167252211	167253211	+	918.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12174.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.40798053654958	4.03819714735377	4.25974016248535	4.77082618147308	4.13761427007736	4.50393393264589	0.643983508468586	0.196541845749181	0.584411999439208
Merged-chr10-25364850-2	chr10	25364350	25365350	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	(CA)n|Simple_repeat|Simple_repeat	5052.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.5418582212859	3.45110083518082	3.65712145713377	3.50069014830401	3.22270108723984	3.67655856635195	-0.284998645197523	0.637172940682652	0.897338937840938
Merged-chr18-3507864-4	chr18	3507400	3508400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-57.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	4.61196033121772	4.58818993706367	4.6407334210518	4.6900657600115	4.48916465083958	4.62680772191051	-0.029799440787642	0.942428269127476	0.987202156853573
Merged-chr10-19558388-3	chr10	19557884	19558884	+	657.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33565.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.43789187800717	3.16873136367025	3.38477792554229	3.0269100007228	3.02415162029454	3.29269412702076	-0.934199526182813	0.154055001237361	0.523208511957484
Merged-chr11-70565061-2	chr11	70564561	70565561	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	2180.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	2.88563690334891	2.64916082481901	2.82727948647659	2.93030260245516	2.63652247489618	2.96037480542668	0.280109295969364	0.706512355293168	0.922988957951178
Merged-chr4-40144683-3	chr4	40144187	40145187	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	1422.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	4.15188959366568	4.3115786059943	4.6764314601003	4.49813973131928	4.25909237757621	4.34317997750748	-0.0475221208393169	0.919929306774634	0.982158152305786
Merged-chr14-63116814-2	chr14	63116314	63117314	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5648.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.87183409966057	5.65819194131469	5.93903818139574	5.65998456268847	5.68376870808781	5.44287711491159	-0.389518684317754	0.22820028389564	0.623147576440797
Merged-chr7-25719490-4	chr7	25718985	25719985	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	-432.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.00128064462891	7.07382121319457	7.03800645343747	7.21434420402507	7.42861350322282	6.89721612831713	0.260257976950073	0.319834227543082	0.713746886375711
Merged-chr1-75479485-4	chr1	75478958	75479958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	13.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	5.82801264797008	5.76516697301311	5.94828858405548	5.93154934600613	5.60504119862622	5.84415293768272	-0.089774276710715	0.775018399607502	0.944524767111052
Merged-chr5-102481578-4	chr5	102481089	102482089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029270, exon 1 of 10)	5' UTR (NM_029270, exon 1 of 10)	198.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.30271419310214	3.39973934196047	3.18385731358899	3.32938964216987	3.12722513877964	3.63575359258376	0.277997916812158	0.667760595701224	0.908813236401378
Merged-chr1-58716355-3	chr1	58715799	58716799	+	839.88092	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3013.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.6318794581222	5.41946860476955	5.64687733426983	5.5726913343443	5.52961146808704	5.78441188937927	0.111189165826252	0.734631866667177	0.932557032428793
Merged-chr17-50170806-2	chr17	50170306	50171306	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	19691.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.02749489714686	2.79464360087316	2.88502773985117	3.08507119643209	2.8324178677285	3.13636328582143	0.527855161791983	0.454294297305832	0.810152808466184
Merged-chr15-59784439-4	chr15	59783947	59784947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10512.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.95180523149685	6.7151604557998	6.62109887679118	6.60636169761112	6.51031656377717	6.11833467138303	-0.53328917714964	0.0668710140966153	0.33802340932818
Merged-chr10-17518686-4	chr10	17518191	17519191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204537.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.06979276662903	6.04322767379536	6.38324178072959	6.16857008470194	6.22487977625794	6.40681799265979	0.1706704548689	0.559966559592396	0.865168019835518
Merged-chr17-42457684-4	chr17	42457188	42458188	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	MTC|LTR|ERVL-MaLR	141088.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	2.92600787794597	2.78153298467159	2.91876567864267	3.3615832390998	3.32175276907934	3.17944143026979	1.95982537917155	0.00476072959575807	0.0592300819682771
Merged-chr5-130204695-4	chr5	130204123	130205123	+	872.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-15121.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	4.12512940249349	4.14742023710777	3.90667597086105	4.2020082316061	4.22855505677594	4.17775147914382	0.371813780794678	0.437784928137346	0.800227351750493
Merged-chr4-53250525-4	chr4	53250014	53251014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040665, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	4318.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	3.61420278478832	3.30177078683811	3.54987363934785	3.35905896063402	3.10138332127052	3.290833155457	-0.961006482057956	0.126486739626359	0.475392232297308
Merged-chr15-95799342-1	chr15	95798842	95799842	+	646.0	f0_balb.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8499.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.70660907836133	6.91984949044142	6.83878932104286	6.79860831214331	7.06105894093843	6.89711637523945	0.160910628704844	0.528752513460187	0.850585575598857
Merged-chr7-118481598-4	chr7	118481076	118482076	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10399.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	6.25289161959126	6.10473746028311	6.4076919839065	6.81404164235429	7.08814247781979	7.12964207415324	1.21400371358401	7.74717126358263e-06	0.000320674287087564
Merged-chr10-86705621-4	chr10	86705132	86706132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	-179.0	NM_001003910	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	8.21359468001063	8.74864308263066	8.16552803351044	8.28098761567133	8.61329948044617	8.03178778584661	-0.10082629033975	0.716391847648831	0.926569584146506
Merged-chr4-35222112-4	chr4	35221612	35222612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3768.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	6.77814481947657	6.75992316901455	6.73774450079269	7.02544198535917	7.11576458802571	7.14255588738954	0.514141956862942	0.032777225254978	0.220496997252503
Merged-chr15-91179452-4	chr15	91178974	91179974	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	12533.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	7.05954791220303	7.40124622128298	7.05884160446991	7.28022035157745	7.42418259527438	6.99206513031255	0.0963444345423659	0.717427724558813	0.927077249271794
Merged-chr19-14565669-2	chr19	14565169	14566169	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	31544.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.09133771753574	3.28908285831057	3.37465911236791	3.15587646322364	3.06953222464374	3.28285980514205	-0.363300131724653	0.571233840831992	0.869428183241799
Merged-chr3-115745426-1	chr3	115744926	115745926	+	624.0	f1_c57bl6.idr	Intergenic	Intergenic	-30371.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.3176844907334	2.58777107523386	2.45433068049942	2.59060023149807	2.71924865748905	3.01430638661047	1.8452460446315	0.0312814335671892	0.214138913845164
Merged-chr14-103033615-4	chr14	103033116	103034116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 1 of 2)	intron (NR_045657, intron 1 of 2)	187.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	5.97028992862057	5.40229854986134	5.35102703055289	6.48263366509462	6.00727792630447	6.01170704648646	0.999670977478991	0.00699430583193832	0.0780974503038009
Merged-chr4-19869710-4	chr4	19869236	19870236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	51009.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	6.0527946252892	6.18501067132713	6.31984384135904	5.52101686318133	5.43640574049044	5.70675181228573	-1.1370648538002	0.000254189147336522	0.00609526529440268
Merged-chr5-110101319-4	chr5	110100842	110101842	+	725.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281812, intron 2 of 6)	CpG	783.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	3.00721277120332	2.75749558222829	2.74304442056906	2.92713208764853	2.81481395781837	2.94106361729019	0.233946910499932	0.745077433358771	0.936032341688524
Merged-chr8-120608547-2	chr8	120608047	120609047	+	658.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197988)	TTS (NM_197988)	-19472.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.40326126610539	3.06756007992643	3.49416787165947	3.44317394130323	3.55345874963863	3.61620966939091	0.789726699962379	0.205798446721044	0.596447652812717
Merged-chr4-156201805-2	chr4	156201305	156202305	+	613.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-987.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	6.74765605014356	6.65589073667391	6.42575556440414	6.73693652599795	7.0692669225961	6.40609221133492	0.246948474420769	0.412637504832298	0.784551818322662
Merged-chr4-139235729-3	chr4	139235237	139236237	+	984.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	41626.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.20417753946826	5.83067301671887	6.04529321533196	6.13830079479539	6.28410522368762	5.96581950748454	0.188081750242093	0.539792188091636	0.856111398039205
Merged-chr5-146730524-2	chr5	146730024	146731024	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64432.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.46561501207057	2.49612500580256	2.70969735000846	2.57330519501669	2.50501119748102	2.47008879315178	-0.228632852684493	0.771714446364534	1
Merged-chr7-75715870-2	chr7	75715370	75716370	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-132468.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.60434875754891	4.43914727914664	4.77467410376538	4.45177537796237	4.46120153276062	4.44657093863959	-0.372884467604349	0.386136302656672	0.766945061739582
Merged-chr6-113657702-2	chr6	113657202	113658202	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	B4A|SINE|B4	19235.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	4.40454116157325	4.12032234335093	4.4367854228267	4.6295580946198	4.06982032894581	4.83918077625275	0.552490534649272	0.275401156112482	0.672917218000561
Merged-chr5-88765788-3	chr5	88765279	88766279	+	946.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	L1ME1|LINE|L1	766.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	6.44830692804084	6.86539369943427	6.77931217897583	7.05290001711809	7.08728631615772	6.99528367758848	0.52279196262854	0.047647409471063	0.276513157153593
Merged-chr17-71484538-1	chr17	71484038	71485038	+	1000.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-9195.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	4.21107289617311	4.39691895930504	4.65698325873457	5.66151379171186	5.88937969232203	5.68021513689019	2.91423058383264	3.80283876969816e-13	7.77460954174557e-11
Merged-chr2-127270173-4	chr2	127269664	127270664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139308)	promoter-TSS (NM_139308)	-65.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	8.6552001993043	8.99745711482548	8.44494118894368	8.40890685623086	8.51943643522861	8.3461618340736	-0.410399042275841	0.0827766827733248	0.380598011836371
Merged-chr1-131279268-1	chr1	131278768	131279768	+	546.0	f1_c57bl6.idr	intron (NM_019777, intron 1 of 21)	intron (NM_019777, intron 1 of 21)	295.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	3.86708913848056	4.19458874925838	4.18636971040994	4.85892096498343	4.53845869317796	5.23527172017649	2.03534299641353	4.38096606407053e-05	0.00141455501162203
Merged-chr7-63933997-4	chr7	63933489	63934489	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4926.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.6891485415367	4.72923184520502	5.17465627632238	4.9952522439395	4.86537904305779	5.40743350841722	0.491095888941688	0.246952527705494	0.644045601901006
Merged-chr13-100449667-4	chr13	100449158	100450158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	Lx8|LINE|L1	3206.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.35917208800172	4.50256072189539	4.54303834175047	5.1495102704958	5.05410486175231	5.16393093316984	1.49892308689303	0.000166569976805002	0.00431908838578703
Merged-chr4-125128630-2	chr4	125128130	125129130	+	683.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-749.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.24398058468362	4.12015358888045	4.10053848024027	4.06724525498864	3.96435128322317	4.21485412494457	-0.233076438274283	0.62738821605244	0.893213626166477
Merged-chr4-40774863-3	chr4	40774363	40775363	+	922.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16978.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.18937017804814	3.99872688570808	4.29092707643419	4.41395425295039	4.22365364991986	4.07808399281668	0.251216511757209	0.600917124058574	0.881855262262798
Merged-chr2-45219993-4	chr2	45219486	45220486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102544.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.55384672774891	4.49286811302602	4.28229994717052	4.42116190310234	4.34835239937661	4.20632952273154	-0.316536502549691	0.481713188280498	0.825198998835643
Merged-chr11-3879888-3	chr11	3879314	3880314	+	742.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	15312.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	2.18857339979636	2.04947979669732	2.05919368588928	2.20818727910612	2.05099575746577	2.39851478506448	0.862697765931116	0.347245436815379	1
Merged-chr4-34457365-3	chr4	34456844	34457844	+	917.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93271.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	2.72101274954144	2.93364317824193	3.07761160907304	3.00373553598576	2.79255968595174	2.91637515736172	-0.0455938809144213	0.949242628215844	0.988169196639905
Merged-chr12-70457221-4	chr12	70456703	70457703	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028339, intron 3 of 7)	intron (NM_028339, intron 3 of 7)	4049.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.87606068472344	5.92804458784185	5.7437540001262	6.08380766787307	6.29974854212504	6.14047513693728	0.564755037252328	0.0558758902985499	0.304354613770735
Merged-chr13-93179756-4	chr13	93179241	93180241	+	898.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 4 of 15)	intron (NR_154997, intron 4 of 15)	12676.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.10397214471634	5.54088239222289	5.31639229392638	5.74036498503767	5.71352916574151	5.38090745823794	0.558700074541629	0.119217909750328	0.461626126599901
Merged-chr10-122575621-3	chr10	122575118	122576118	+	878.522217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5727.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	5.34656351736938	5.47613166497173	5.47865611782183	5.77448528546439	5.61907920812578	5.54175301731298	0.412839304760282	0.205180044769118	0.595816936654911
Merged-chr2-109281134-3	chr2	109280638	109281638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139303, intron 1 of 16)	intron (NM_139303, intron 1 of 16)	400.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	7.47815953226194	7.90592981735112	7.4391455335827	7.29864732162817	7.82761753387161	7.55766905775403	-0.0676191387440733	0.806056407215296	0.954102910475772
Merged-chr19-57360948-4	chr19	57360422	57361422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	-23.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	7.38615662066922	7.36885811565758	7.68834176289474	7.57811292249978	7.32822490322027	7.27620235468504	-0.117512011590692	0.634739267072543	0.896354115104213
Merged-chr11-106770443-3	chr11	106769980	106770980	+	946.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_148431, intron 7 of 7)	B3|SINE|B2	8986.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	4.24758894646802	4.27320743808801	4.12672320292966	4.05774314919716	3.94697611891158	4.28540866317305	-0.362303777734743	0.451817087398103	0.809245753174589
Merged-chr7-56050098-4	chr7	56049582	56050582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010418)	promoter-TSS (NM_010418)	-73.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	6.47066045956884	6.91929826182286	6.8290420315129	6.68365345176132	6.85336443874877	6.85849597021181	0.074592159948163	0.785682840238452	0.948164689606319
Merged-chr11-60212091-2	chr11	60211591	60212591	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	-1620.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	4.34142598495242	4.38333574702812	4.44798967557888	4.37525682251461	4.05765402753299	4.25364925891838	-0.426325935839358	0.353335685854714	0.740675057907973
Merged-chr8-127440734-4	chr8	127440239	127441239	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141087.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	5.12294924762312	4.79235180343343	5.2079949491648	6.73347105181331	7.0824235597425	6.71858537560009	3.26664880314694	2.09607421713388e-22	2.18012679324095e-19
Merged-chr11-32224997-4	chr11	32224489	32225489	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1516.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	2.93800493340066	2.85629365970792	3.29991986677853	3.0987225851353	2.54333899202364	2.79352870484717	-0.982783863899798	0.223874351824488	0.618583567117513
Merged-chr12-3349576-4	chr12	3349058	3350058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15574.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.74783944694938	5.75871566540855	6.07398711823667	6.09819163568441	5.83234556702398	6.19519027583171	0.320908406612549	0.310485993788464	0.705852806512131
Merged-chr14-73173866-4	chr14	73173371	73174371	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170694, exon 11 of 15)	exon (NM_001170694, exon 11 of 15)	31086.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	6.84655634903378	6.58096978052446	6.87174724805596	6.74034595220161	6.69876470123652	6.67299821021366	-0.0985959505062679	0.704189526983868	0.9223772679418
Merged-chr19-4334004-4	chr19	4333489	4334489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27767.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	7.00890245255553	7.14847543947628	6.99667135751236	6.94605504302369	7.03667055301464	7.05461762126046	-0.06666261426533	0.781163717375033	0.946170623764308
Merged-chr14-70101537-4	chr14	70101035	70102035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	1442.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	6.15006819506039	5.97437159095662	6.32147300674973	6.46242514778195	6.77062794990767	6.57839054366187	0.768489831650278	0.00710860996626735	0.0790238100298161
Merged-chr1-154258780-4	chr1	154258274	154259274	+	932.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-1868.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	3.72351770688738	3.92077167184948	3.61464866112729	3.44188046701333	3.32236106918455	3.9332799330954	-0.600285562944341	0.328762957576278	0.720905796252831
Merged-chr3-146059601-4	chr3	146059122	146060122	+	929.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172864, intron 16 of 22)	Tigger7|DNA|TcMar-Tigger	48414.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	3.3300912620584	3.4907163121846	3.31484155548881	3.56354945401451	3.69970205627973	3.55905691207525	0.833806402161014	0.154167578960117	0.523300036761231
Merged-chr2-66158740-4	chr2	66158214	66159214	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33921.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	3.89466146399758	3.92304189456644	4.06103629492283	4.01791156490818	3.44768859921388	3.50100635692488	-0.876312069877151	0.137557120887376	0.495743572164087
Merged-chr13-20800815-4	chr13	20800350	20801350	+	927.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	6737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	4.71271934817215	4.6000043364278	4.59270700444615	4.72018660598402	4.5921912209163	4.73881887426354	0.0981524016081638	0.809286570765218	0.954721853010197
Merged-chr8-106935663-4	chr8	106935146	106936146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009229)	promoter-TSS (NM_009229)	-104.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	6.68421392032662	6.74000168337549	6.82047355436172	6.60754048669137	6.66817322650518	6.52468703774828	-0.219919299787685	0.387965140717622	0.767919582968549
Merged-chr5-142911701-4	chr5	142911237	142912237	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4983.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.09666051930198	5.0731640327319	5.53532572154719	5.31204158493563	5.60560690347904	5.64903078965945	0.570861268346495	0.120421031331892	0.464017466660372
Merged-chr7-122159426-4	chr7	122158998	122159998	+	970.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011121)	promoter-TSS (NM_011121)	63.0	NM_011121	18817.0	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo like kinase 1	protein-coding	4.06963734147953	4.00899157300282	3.77081425864038	3.72970095748379	4.03263048678741	4.04429375408144	-0.056669654169991	0.914147241806527	0.980894573251353
Merged-chr3-84504504-4	chr3	84503991	84504991	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 7 of 7)	intron (NM_001293801, intron 7 of 7)	-24052.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	3.68148488362171	3.41338138583567	3.45813746258395	3.10109108162909	3.19674467401187	3.05331537659126	-1.6479561023456	0.0123752024894365	0.11673459344077
Merged-chr12-80109135-4	chr12	80108639	80109639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007564, exon 2 of 2)	3' UTR (NM_007564, exon 2 of 2)	3874.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.79297090071622	3.89145033926692	4.18206007772059	4.54410960108024	3.96888485310171	4.04934204196064	-0.356373834966774	0.538820009603351	0.855482662171341
Merged-chr10-128037015-4	chr10	128036526	128037526	+	995.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282976, intron 2 of 7)	intron (NM_001282976, intron 2 of 7)	1680.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	6.58070723060568	6.40429764136974	6.03644761708129	6.53411344063157	6.42951426200512	5.91870479960476	-0.0622521018043897	0.850527795076127	0.964967504399978
Merged-chr14-104474643-4	chr14	104474163	104475163	+	894.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6664.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	2.16870541470236	2.10099693864125	2.41969443584876	2.03553315027694	2.12229545410391	1.96938904846845	-1.38499467425651	0.15359546811517	1
Merged-chr10-120140916-2	chr10	120140416	120141416	+	608.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028679)	TTS (NM_028679)	-27951.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	4.55427362561893	4.99802298553358	5.0625438997898	5.44988370562514	5.1030098633924	5.2258213338847	0.80057255665832	0.0472294238608414	0.275258520740554
Merged-chr3-97737830-3	chr3	97737336	97738336	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30178.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.66572783889514	4.62507754326137	4.49066224987163	4.29513148377708	4.13319267161786	4.03502089360707	-1.14829083755397	0.0119215337250805	0.113718557628855
Merged-chr18-38000057-2	chr18	37999557	38000557	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1088.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	4.397781569035	4.67770757844201	4.6958392327213	4.3805472804928	4.24872561032137	4.68660212923745	-0.386523843503782	0.392460076286698	0.771172125304963
Merged-chr18-12939824-2	chr18	12939324	12940324	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	B4|SINE|B4	2017.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.24225283009732	3.38239367451104	3.23928591122747	3.22607708481852	3.19472277185034	3.19399035785478	-0.361683990801022	0.560324359286096	0.865206445804495
Merged-chr15-6341666-4	chr15	6341184	6342184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	41895.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.40558784777097	5.88270102469155	5.56647377332602	5.43370949842206	5.37814087025738	5.60132755457304	-0.325777777019144	0.349622827304935	0.737686789085836
Merged-chr19-5512380-4	chr19	5511865	5512865	+	982.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1848.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	7.66694404593813	7.54817989699118	7.37629397950121	7.4327306063344	7.98970941229739	7.5293451900671	0.208376059059405	0.432473791523378	0.797386699146392
Merged-chr3-96564830-4	chr3	96564305	96565305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	1996.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.78738268077687	6.61765657102989	6.84417014260754	6.85843605494925	6.79013456932375	6.51102699582369	-0.0189392867512307	0.943250808336249	0.987369647251762
Merged-chr19-7583372-4	chr19	7582860	7583860	+	913.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23833.0	NM_001356574	56072.0	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	Grip1|gal-12	lectin, galactose binding, soluble 12	protein-coding	4.35282718727233	4.26595834638974	4.9495968162582	4.1206541543088	4.16193502536342	4.78942736353971	-0.408150853693874	0.443459504604713	0.803800173379074
Merged-chr6-108566750-4	chr6	108566246	108567246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56421.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.29215893279483	6.22383531206627	6.1771681059404	6.57725029505328	6.63280334748869	6.05353427085292	0.371517486855944	0.219726864851796	0.614074140274511
Merged-chr18-80294874-4	chr18	80294378	80295378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190373, exon 4 of 4)	3' UTR (NM_001190373, exon 4 of 4)	38572.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.15023451429646	3.04052470050773	3.28260179181753	3.24114021511022	3.13279792311246	3.12545788755044	0.050219565215559	0.937602661639629	0.986057836872162
Merged-chr1-43466139-4	chr1	43465640	43466640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20389.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.34622903058626	5.56663510424279	4.90806619365536	5.47843843777043	5.42753198377908	5.24027057634026	0.142884276043526	0.710356229409839	0.924293540432205
Merged-chr8-79496523-4	chr8	79496027	79497027	+	812.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97059.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	2.97009129432968	3.19378576040237	2.95766027309014	3.26675804159945	2.75166599349379	3.15271688698917	0.121030831842563	0.868404899047563	0.969648884057295
Merged-chr1-191094517-1	chr1	191094017	191095017	+	1000.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3897.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.75535228583674	5.07878728139071	5.35403856317658	5.27419988438318	5.22516774773438	5.17127745160177	0.313911784263087	0.417938470735695	0.788440971405969
Merged-chr12-35827082-4	chr12	35826591	35827591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98530.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.03541795055059	3.20693036360657	3.15920856287047	2.95736272553351	2.89885763803961	2.80357237312849	-1.15415425648693	0.0976182613191234	0.416672837172546
Merged-chr2-160615225-2	chr2	160614725	160615725	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30672.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	3.86958563744967	3.9979885083837	4.07813771932415	3.95902754348962	3.82374969563036	4.0063966977123	-0.165868505090564	0.741383556557137	0.934809943386314
Merged-chr5-99241799-2	chr5	99241299	99242299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	11128.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.59626249315794	5.72666501660792	5.72691917531089	5.58712288974431	5.83925552238385	5.76299373816159	0.100551132413598	0.75000857466768	0.937476275940627
Merged-chr10-8135398-4	chr10	8134878	8135878	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179255.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.16543955027242	2.75125697222037	3.03156445185486	3.58318570113655	3.17785056660326	3.66168370783414	2.07691460109907	0.00527275037170816	0.063493853400392
Merged-chr9-90248312-2	chr9	90247812	90248812	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 2 of 12)	(CCA)n|Simple_repeat|Simple_repeat	22457.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.79291276399458	3.70067804562886	3.97663327980717	4.03343521194311	4.02365591236314	3.73919428761461	0.389835139286769	0.459639400116408	0.813819730244683
Merged-chr18-68096730-4	chr18	68096233	68097233	+	945.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	-131213.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.79457771111553	3.08013431164061	3.01817766829711	2.82845540028504	2.79341135019291	2.91403236406721	-0.627168729524487	0.376486362441066	0.759268941224854
Merged-chr13-77166218-3	chr13	77165733	77166733	+	653.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081353, intron 1 of 3)	MER21C|LTR|ERVL	30697.0	NM_001145676	72371.0	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	2.80013058296746	2.6051975582072	2.87892665852431	2.59243003994979	2.71346443135721	2.44399718043401	-0.933749996474276	0.251675003620041	1
Merged-chr12-75720218-3	chr12	75719714	75720714	+	940.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 2 of 2)	B1_Mur1|SINE|Alu	15515.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	6.31078365501384	6.56492376638766	5.92420349113776	5.64002589573018	5.6402041084581	5.40395512173154	-1.27890211829091	0.000149098338860481	0.0039547894739888
Merged-chr1-54835973-3	chr1	54835466	54836466	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	90421.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.7792926764478	3.68251556329789	3.96177242517756	3.65477084573801	3.30177080121725	3.63962831754599	-0.944220582686266	0.104602924967004	0.431629069211725
Merged-chr7-121035472-3	chr7	121034959	121035959	+	763.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 1 of 4)	intron (NM_021554, intron 1 of 4)	1014.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	6.3828337963608	6.04995997656254	6.50162400629446	6.61537230779238	6.35574306142807	6.34151477672128	0.209105473589634	0.479839274124821	0.824391932626821
Merged-chr8-10840743-1	chr8	10840243	10841243	+	1000.0	f0_balb.idr	Intergenic	Intergenic	41711.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.70306848077196	4.34217653086718	3.9684239109091	3.92923660582391	3.73658608688357	3.7588006502596	-1.66222238693998	0.00236337577293608	0.0350850617867021
Merged-chr6-52698169-4	chr6	52697684	52698684	+	938.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15545.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	4.88575693417221	4.71558771439281	5.02075889876111	5.16717580054581	5.22179311354783	5.30928991414327	0.767667077567142	0.0388410807221826	0.244380884606032
Merged-chr15-95851816-4	chr15	95851306	95852306	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-21734.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.64014317583069	6.12700793636063	6.15894886519871	6.17090995018497	6.32920112418429	6.13508134788082	0.38798898037003	0.2217493673631	0.616585509091023
Merged-chr8-125359682-3	chr8	125359173	125360173	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133160.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.42045605985626	2.34818933853017	2.46212541946744	2.38917085072001	2.15530903527437	2.13382283356122	-1.21784210913433	0.175963962970287	1
Merged-chr9-114861644-4	chr9	114861163	114862163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17511.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	4.47997713866953	4.4560635726859	4.62331773598267	4.27820442814799	4.11746788703048	4.12705177838383	-0.903881048685881	0.0458698332871855	0.270652183247775
Merged-chr17-34366703-2	chr17	34366211	34367211	+	890.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_079835, intron 8 of 8)	intron (NM_079835, intron 8 of 8)	-10421.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	2.49647052728279	2.46177288635928	2.35158509372266	2.85271928093091	2.53593296360319	2.7590707405038	1.63324942721311	0.0500232328242402	1
Merged-chr9-57467583-2	chr9	57467083	57468083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	477.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	5.8440002783875	5.97104624342055	6.09074428212454	6.00440540544569	5.95506993139202	6.06507154876094	0.0681290386459916	0.816934028499468	0.956754861188725
Merged-chr5-150598354-4	chr5	150597796	150598796	+	979.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-3771.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	7.38320169104712	7.70401056084741	7.50103417650566	7.57546465893182	7.86446608446341	7.30501356443962	0.107871156070636	0.681411715033643	0.914693263933768
Merged-chr15-79414786-4	chr15	79414289	79415289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11486.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	7.62646356601483	7.47621138931999	7.15598509736746	7.21232919836708	7.54898432805046	7.17518110205491	-0.162265066668988	0.541666049700902	0.856879077002901
Merged-chr3-79237830-4	chr3	79237347	79238347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045502, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	24928.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.60939393171189	6.4742753688545	6.76923294937024	7.21671260346787	7.46167487304728	7.28469813170016	1.09346664609047	1.47289777480039e-05	0.000558854893048751
Merged-chr9-14835519-4	chr9	14835009	14836009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-24701.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	6.90405313834984	6.8373767666663	6.95716385628468	6.81739330868664	6.57989873029915	6.81790589183768	-0.251307469726998	0.322472294893296	0.715966451783264
Merged-chr12-32634569-1	chr12	32634069	32635069	+	548.0	f1_c57bl6.idr	Intergenic	Intergenic	-185766.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.81826147575545	5.18206526571027	4.31593280837348	3.76330589442357	3.74471615684974	3.9693752235837	-2.83383437251701	2.16051649612942e-07	1.40227969274521e-05
Merged-chr5-121400346-4	chr5	121399855	121400855	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	2373.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	5.96569230019333	5.61428561003129	5.84383156810364	6.18436918611077	6.41324191349967	6.00391750019631	0.703810656838843	0.0253695032703414	0.188696310728396
Merged-chr15-34054946-3	chr15	34054452	34055452	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-27767.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.47286503722085	3.6441474905835	3.78384599441996	3.57650134640324	3.44737403179475	3.75545422148146	-0.150430889231677	0.792656629082485	0.950032655975256
Merged-chr7-80841213-2	chr7	80840713	80841713	+	871.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20895.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	3.97819325835328	3.73981582629734	3.76614121629345	4.01126858488403	3.90786032021589	4.21394522103397	0.637633632098181	0.220560764316073	0.615089321219016
Merged-chr1-192537371-4	chr1	192536891	192537891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 11 of 11)	ORR1D2|LTR|ERVL-MaLR	233828.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	5.93738866941359	6.05480860302765	5.29991598599217	5.37040356272885	5.18563160815472	5.14956413949895	-1.09217905113023	0.00388292039269165	0.0508163007290165
Merged-chr7-4491636-3	chr7	4491207	4492207	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	9973.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	3.83274563532066	3.61364696223059	3.9315501459213	3.85213973415253	3.40890157714462	3.85732853577456	-0.257561241760766	0.655807046418066	0.904417939008229
Merged-chr13-24831581-4	chr13	24831087	24832087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	-72.0	NM_019551	56196.0	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	7.14747085100168	7.33697265705008	6.94774042686501	7.21202783395573	7.1616197661657	6.93309847850109	-0.0729988128425037	0.776142167273269	0.94480820353868
Merged-chr14-52141851-4	chr14	52141363	52142363	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30960.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	4.18941020835507	4.25954628479079	3.93032588717911	4.25282120012289	4.24853489227206	4.10507763472009	0.178492267656339	0.711982381679973	0.924891945289204
Merged-chr15-58139865-2	chr15	58139306	58140306	+	699.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1560.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	4.60881920668119	4.66369624763301	4.72843294609837	3.86532388478205	3.66011689839062	3.86561597680744	-2.57949152862381	4.09417360787588e-07	2.47016793792277e-05
Merged-chr2-116977991-4	chr2	116977476	116978476	+	898.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77824.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.63449635477667	6.40276710148693	6.41487605525289	6.54083301681561	6.83241046562753	6.49340675945032	0.238838458697243	0.390763659727876	0.769924051020271
Merged-chr4-119181624-4	chr4	119181102	119182102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013848, intron 8 of 12)	intron (NM_013848, intron 8 of 12)	-7407.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	3.97151159272888	3.8230055563896	4.0808225278256	4.33734410270979	4.50519164185067	4.24463907829439	1.18371294315091	0.0138292408507631	0.125680719624405
Merged-chr4-106911421-4	chr4	106910926	106911926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023672)	promoter-TSS (NM_023672)	-44.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	5.68259375916933	5.08334830762577	5.70463332841381	5.71652250527394	5.09913981258757	5.76606669101197	0.070683525399617	0.863496828968819	0.968269312109804
Merged-chr3-89088740-2	chr3	89088240	89089240	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 8 of 10)	intron (NM_028188, intron 8 of 10)	1291.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	3.74227315139631	3.54876093119905	3.79106274605414	3.84072835453255	3.49815026154051	3.70809889740845	-0.0283100430355538	0.959733702829654	0.990242512723989
Merged-chr14-67933768-3	chr14	67933258	67934258	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-186.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	6.34636346857376	6.40908545660386	6.63471067817251	6.15215752265169	5.80217250827651	6.31985003932496	-0.612434391253968	0.0457878205723863	0.270385887036611
Merged-chr15-102274147-3	chr15	102273653	102274653	+	677.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5303.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	3.07393706394216	2.76155196886282	3.25717982370834	3.03942910144349	3.0088464483909	3.21985392372321	0.209583830222416	0.767130827177388	0.942573703853445
Merged-chr4-8545247-1	chr4	8544747	8545747	+	590.0	f0_balb.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	9603.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	3.95559559942217	4.03125471480454	4.44758600594897	4.17551431452244	3.91496600093599	4.58686924838735	0.250207493612202	0.640911390659562	0.89867134565739
Merged-chr13-63815301-4	chr13	63814826	63815826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023507)	promoter-TSS (NM_023507)	86.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	7.9651662145279	8.24619427668859	7.94188238333079	8.51618870634342	8.47641050165682	8.10369503739548	0.450485612802301	0.0588203806199993	0.313911668578654
Merged-chr9-106280580-4	chr9	106280075	106281075	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	-486.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	6.60094319173394	6.8177944272511	6.80355689876273	6.43251326317599	6.79722659258908	6.32428717912227	-0.306359878690424	0.285044435514118	0.682610297307855
Merged-chr3-108880666-4	chr3	108880175	108881175	+	828.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	9333.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	6.71700182321897	6.49108842225094	6.38160026850246	6.3905167260506	6.49704307778755	6.63618497170354	-0.0598407533289058	0.828049502020739	0.959633697141491
Merged-chr1-74364432-3	chr1	74363915	74364915	+	966.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 5 of 9)	intron (NM_001033345, intron 5 of 9)	2307.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	3.78174239673939	4.0228973231651	4.23627449498399	3.94967351397619	3.71206118579111	4.26126661940985	-0.107044383591346	0.844637709608995	0.96373428957366
Merged-chr10-67124396-3	chr10	67123897	67124897	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2861.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.9603975263379	5.20389631490938	4.75329785688456	5.24977845546872	5.14323897328711	5.05495544732124	0.326154664079457	0.398551189117087	0.775273667788888
Merged-chr13-29959213-4	chr13	29958711	29959711	+	819.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010093, intron 1 of 6)	MTC|LTR|ERVL-MaLR	25180.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	2.82440121474635	2.95099158317911	3.13474862987712	2.98300496433711	3.11435935052426	3.26050356980628	0.681932455257775	0.31859335812308	0.712544783966919
Merged-chr5-122901333-1	chr5	122900833	122901833	+	644.0	f1_balb.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-983.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	5.5058294134691	4.78580216695569	4.60821530221231	5.2651439753026	5.12841165401454	5.01286047360383	0.205849036573751	0.652808584571299	0.903027303548785
Merged-chr9-110676257-1	chr9	110675757	110676757	+	570.0	f0_c57.idr	intron (NM_028312, intron 1 of 6)	ID_B1|SINE|B4	19754.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	6.59571847796087	6.27660856438198	6.77221252217219	6.88445988072692	7.00623332729563	6.87446789348155	0.583033051291393	0.0337628685981923	0.224657398666005
Merged-chr13-18807848-2	chr13	18807348	18808348	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	90556.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	5.34389603265846	5.45910339152078	5.45312105078958	5.18183941503397	5.38565284360082	5.45818303160889	-0.144169651712426	0.672442775576675	0.910850224978169
Merged-chr8-121108401-4	chr8	121107901	121108901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-22.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	7.03342565081488	7.34785372679964	6.96349890001189	6.9916780573632	7.07439250401917	7.12766258541145	-0.105150492694455	0.679402606269457	0.913806609053229
Merged-chr12-55434092-4	chr12	55433579	55434579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35254.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	6.67987594149059	7.14206144264019	6.88159209275928	7.14105348245643	7.45268331284457	7.07915192136775	0.489035558364288	0.0755511177842135	0.361882008485931
Merged-chr7-63941723-4	chr7	63941218	63942218	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2803.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.00301686077358	5.05370304943064	5.2321128248634	5.50134787951681	5.74569294935331	5.69596035465147	1.10633756334341	0.00126240322316316	0.0215851962777009
Merged-chr14-17902230-1	chr14	17901730	17902730	+	1000.0	f0_c57.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-79414.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.84083973475876	5.9642962082561	6.10003422547068	6.36197108371645	6.33475127403895	6.30391411849206	0.626932009138903	0.0268998657001002	0.195336585815708
Merged-chr2-52483689-4	chr2	52483190	52484190	+	944.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-58816.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	2.59713079298251	2.77491953405047	2.73297865442181	2.75496792728019	2.48872883056762	2.86635137160982	0.0222917342836493	0.976982453484247	0.994769134402338
Merged-chr11-20214987-2	chr11	20214487	20215487	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B3|SINE|B2	13575.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.45514743047576	4.0562448952958	4.2825933641331	3.96619108420727	3.96180410391638	4.39145912548792	-0.452788420327254	0.371492618339049	0.755644701072079
Merged-chr13-39923323-4	chr13	39922824	39923824	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	364687.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	2.61041209637078	2.88642623035953	2.47549879135767	2.88753994446255	2.62030947509175	2.81656133907233	0.547616846609447	0.502114343592862	1
Merged-chr5-66134879-2	chr5	66134379	66135379	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	16099.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.60196026361922	3.33075492116802	3.48155266016387	3.26151961399164	3.09666645073382	3.70277127494625	-0.390035452840577	0.551411291731293	0.861210127681835
Merged-chr13-20798689-4	chr13	20798198	20799198	+	784.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4585.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	5.19058388901164	5.30979020095427	5.1671515074841	5.91397701041683	6.14339183428475	5.80628544831878	1.38502628338737	2.85423096066396e-05	0.000986274293085245
Merged-chr5-5321001-4	chr5	5320475	5321475	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54907.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.57421317893585	5.74601256039556	5.50743837318571	6.04203080404537	6.5264456451378	6.45977219045709	1.28431331850898	6.58034761361812e-05	0.00198599043973136
Merged-chr10-80744073-2	chr10	80743573	80744573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1798.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	5.17139296651368	5.02084100778983	5.01526928904985	5.28695774672198	5.23719940344951	5.28262337871624	0.396646119561103	0.262732187348144	0.660725355724737
Merged-chr5-101934775-2	chr5	101934275	101935275	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 15 of 66)	intron (NM_172882, intron 15 of 66)	135146.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	2.68530707015684	2.725414935977	2.79916654594617	2.56561292950273	2.44335640529799	2.6273352407656	-1.12114574120695	0.148079387035208	1
Merged-chr6-39420172-7	chr6	39419623	39420623	+	980.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311109)	promoter-TSS (NM_001311109)	246.0	NM_018810	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	7.43591325650734	7.69568748515129	7.39412438559858	7.19251371099767	7.11980801612508	7.13552009663487	-0.550930021729088	0.0208299128179073	0.16585793165095
Merged-chr9-57917853-2	chr9	57917353	57918353	+	998.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027086, intron 3 of 10)	intron (NM_027086, intron 3 of 10)	6867.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	3.88969542562517	3.91915752575654	3.91596149362436	4.4569588917662	4.42565313619082	3.82107513609526	1.04714516764097	0.0473102905834194	0.275498261520412
Merged-chr13-102846683-4	chr13	102846166	102847166	+	979.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	86411.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.67473295935991	3.66968478922843	3.53747225306097	3.67957314505017	3.34017617465967	3.43835652667817	-0.500570970246867	0.391204852613741	0.770214029510808
Merged-chr2-69713546-4	chr2	69713028	69714028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177244)	promoter-TSS (NM_177244)	-922.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	5.06959789260397	5.21805297862019	5.24387058059194	5.30970969730715	5.1956998028131	5.24368860696287	0.148240242180025	0.672645750715076	0.910949422492829
Merged-chr11-114851012-4	chr11	114850501	114851501	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110337)	promoter-TSS (NM_001110337)	-531.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	5.88626824118525	5.92448870324125	6.14894426482995	5.47570132433351	5.81578847156418	5.62048298645252	-0.591885366225468	0.0665158975444657	0.336903749870946
Merged-chr8-84237780-4	chr8	84237249	84238249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-707.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	8.53933726983154	8.53325788219164	8.14070130561129	8.40317921191732	8.70760140291094	8.04846794700324	0.00073547800109842	0.99777831447705	0.999556200228827
Merged-chr4-135270213-2	chr4	135269713	135270713	+	777.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	2547.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	2.62688018443056	2.68694814442863	2.76255370332896	2.8257177388211	2.68999318726828	2.83558286276598	0.487374144055097	0.503742461946245	0.837170638508299
Merged-chr1-74601403-4	chr1	74600922	74601922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305230)	promoter-TSS (NM_001305230)	-25.0	NM_001305230	57751.0	Mm.280920	NM_021313	ENSMUSG00000026171	Rnf25	0610009H16Rik|AO7	ring finger protein 25	protein-coding	5.53991960875037	5.69716035329636	5.2961070909635	5.49585160906188	5.62457034145948	5.65932386147229	0.112736346267789	0.737738912610708	0.933858424870961
Merged-chr18-12971607-2	chr18	12971107	12972107	+	923.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008378)	promoter-TSS (NM_008378)	-316.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	5.75117508172649	6.56974489089093	5.90892192503792	5.85897164059617	6.01763208891509	5.48615506292255	-0.556673830699579	0.147256506049941	0.51213793055522
Merged-chr10-117449925-4	chr10	117449443	117450443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2508.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	3.54701439619619	3.45758129678856	3.42106685456311	3.5722987710206	3.47634185597936	3.85259876635654	0.55530711817487	0.339606744313232	0.729313720985741
Merged-chr13-43767905-4	chr13	43767382	43768382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17230.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.92390182460965	7.56360103958833	7.48748871824645	7.36284391380473	7.38846270726283	7.00990576942142	-0.592271458928504	0.0244272514987305	0.184207245124738
Merged-chr10-13837875-4	chr10	13837382	13838382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31075.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	6.71550386800901	6.32687222124555	5.7815054569248	5.25671625938288	4.97672332884657	5.21385792255812	-2.18430908222084	8.16579894775990e-09	7.55008813953212e-07
Merged-chr16-36779755-3	chr16	36779254	36780254	+	814.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	5208.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	4.3220652755634	4.08710389475291	3.99301312427984	3.79071158504537	3.95073059800127	4.0623714161518	-0.621236328071655	0.219856110702158	0.61423936831415
Merged-chr5-104460143-2	chr5	104459643	104460643	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008861, exon 1 of 15)	exon (NM_008861, exon 1 of 15)	686.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	2.74040687562664	2.75242872467063	2.79937885411434	2.92203171445512	2.4989328028205	2.54900008982802	-0.485384739967029	0.539826810556025	1
Merged-chr19-21270619-2	chr19	21270119	21271119	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1659.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	2.92034804182784	2.68867947171487	2.83296124244342	2.85107868028042	2.67202231000937	2.96542306824184	0.0622407607225067	0.932134461403053	0.985064763255207
Merged-chr17-71190260-2	chr17	71189760	71190760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6282.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.45376043065698	6.53324112319159	6.14712041199305	6.35632980642123	6.88591088716093	6.39849287099296	0.298461020116001	0.337009261225251	0.726949528325002
Merged-chr1-155066832-2	chr1	155066332	155067332	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	16432.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.75847683066453	3.61912620854724	3.57878288899597	3.57530654813617	3.53753163782445	3.59523315186114	-0.316017119628636	0.56866240284537	0.868688415081798
Merged-chr6-116226944-2	chr6	116226444	116227444	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 14 of 30)	intron (NM_026585, intron 14 of 30)	18911.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	5.54036764253918	5.56213673185281	5.65286153902805	5.48397024258124	5.48688523292515	5.9293791673845	0.101971814521572	0.763480972018447	0.941793063578371
Merged-chr2-30807774-4	chr2	30807267	30808267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356435)	promoter-TSS (NM_001356435)	-201.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	7.45071763080885	7.50651700531827	6.93405643338204	7.20607282008984	7.07074061767083	6.58812293727255	-0.50896210713199	0.0924287928502429	0.404971565240536
Merged-chr15-31510623-4	chr15	31510127	31511127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	20410.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	4.17365910709853	4.19540176232198	4.29752816613431	4.31104032020889	4.24541621891804	4.03343446419787	-0.0291805963305528	0.950362770537659	0.988425934178221
Merged-chr5-125380666-3	chr5	125380251	125381251	+	773.333313	f0_balb.idr|f1_balb.idr	Intergenic	B3A|SINE|B2	9266.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.39335058327255	3.5117019840264	3.66318601232023	3.38247032459246	3.36448145424014	3.41864374096057	-0.506955538526742	0.388108029747238	0.768110541937216
Merged-chr9-56152295-2	chr9	56151795	56152795	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019793, intron 1 of 6)	intron (NM_019793, intron 1 of 6)	8775.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	5.27495005192411	5.45741064932006	5.46693534096569	5.2790119374821	5.22810887924534	5.41416279922588	-0.193038679587269	0.572800030704567	0.869934493236159
Merged-chr15-83151594-2	chr15	83151094	83152094	+	591.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	1949.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	3.16082188729175	3.02279289753709	3.09035361648068	2.99728124141919	2.9361209347499	3.16209597005773	-0.287321011530427	0.664996735720746	0.907721942545399
Merged-chr14-63125508-2	chr14	63125008	63126008	+	934.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	B1_Mur1|SINE|Alu	3046.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.81275353199374	8.38620094216722	7.82212779270424	8.34135935239895	8.45015826271457	7.88687359734474	0.297323707804167	0.291264766873387	0.688999537228167
Merged-chr5-130003857-2	chr5	130003357	130004357	+	866.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	-808.0	NM_001357027	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	5.73588643116769	5.51350364136212	5.56348044565576	5.08529994713427	5.27401006529442	5.12604810511459	-0.857062293447955	0.0132945152230772	0.122476751846967
Merged-chr1-149826349-4	chr1	149825861	149826861	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	96078.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.02272805644796	3.95340564315734	4.24918073963211	5.21674995025196	5.13953695146933	4.87882012455417	2.58845997184487	9.0704524259922e-09	8.29378247760395e-07
Merged-chr5-64602112-4	chr5	64601616	64602616	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045078, exon 3 of 4)	non-coding (NR_045078, exon 3 of 4)	8583.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	4.74433721182408	4.37124812184477	4.90085736574272	4.6734374771764	4.3246829063646	4.71629515775673	-0.258649765984535	0.570825465883847	0.869266484779943
Merged-chr17-15704735-4	chr17	15704231	15705231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	-236.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	8.64523872047127	8.53134947623678	8.17868892272172	8.41102211888125	8.35163368766576	8.06191569556826	-0.256908753012162	0.284958218898573	0.682541336195988
Merged-chr7-98672755-4	chr7	98672249	98673249	+	910.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16180.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	5.93270022799587	5.90003274520607	6.09049508515677	5.79659875752987	5.74599019885069	5.93110499772609	-0.267893377101965	0.373115858484997	0.757006149061447
Merged-chr11-117792568-7	chr11	117792044	117793044	+	898.3214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195088, exon 16 of 16)	exon (NM_001195088, exon 16 of 16)	-5116.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	4.79343026420537	4.67912659125912	4.82003966863444	4.83583736160286	4.70986763674398	4.81053005947206	0.0477146096921017	0.903422499056286	0.977827650905621
Merged-chr4-129820027-4	chr4	129819513	129820513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-466.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	8.21822743118689	8.00613231917395	7.70131391664957	7.91068027283127	7.90947744281489	7.68295572597446	-0.223658844503103	0.361974462429956	0.747633695821668
Merged-chr12-105009881-4	chr12	105009377	105010377	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-68.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	2.78365364511023	2.5283963570525	2.77172894618911	2.52900616339901	2.22232426192644	2.39851451125792	-2.00142998695912	0.0262388579101677	1
Merged-chr6-89256179-3	chr6	89255663	89256663	+	918.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29562.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.68889603041668	5.94938152279797	5.91688422115362	5.51199435333887	5.7522510190285	5.70690009592252	-0.346343194466651	0.277396505294286	0.674617482827602
Merged-chr10-8799543-2	chr10	8799043	8800043	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	PB1D7|SINE|Alu	86527.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.74725400068182	2.44025990230481	2.93161804303304	2.47606716449752	2.40164107479387	2.59013557373176	-1.32946737513429	0.109994256150777	0.443329553884578
Merged-chr1-172196131-2	chr1	172195631	172196631	+	568.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329869)	TTS (NM_001329869)	10673.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	3.74227720637985	3.37866279313375	3.90785522773532	4.17665648186589	4.13385996459758	4.60177395385575	1.90117382516997	0.00093627412142553	0.0171070481105787
Merged-chr3-106788158-4	chr3	106787647	106788647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	2002.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	7.67448873051087	8.00572974950345	7.646024830682	7.83225974084549	8.02839494303369	7.73022395637381	0.119772626041002	0.619708701105467	0.889875428874878
Merged-chr18-49523433-2	chr18	49522933	49523933	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033785, intron 1 of 1)	L1VL1|LINE|L1	144.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	3.26965722826013	3.24127927701442	3.42999131450599	3.33348212477759	3.26610756691606	3.16173206051126	-0.214156363988327	0.729522966481745	0.930635866770147
Merged-chr10-13499627-5	chr10	13499141	13500141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	6.74226775266541	6.22931776693956	6.49751130031202	6.65894783769998	6.3972285749393	6.40970190193801	-0.0214565618995398	0.9422368204525	0.987119565429783
Merged-chr3-108123471-3	chr3	108122969	108123969	+	959.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010306, intron 3 of 8)	intron (NM_010306, intron 3 of 8)	22683.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	3.95261990141697	4.12525099001209	3.9231219861464	3.95907917878305	3.98812357783883	4.0898152354284	0.00467187415423944	0.992457583849779	0.998523796268552
Merged-chr11-103017151-4	chr11	103016661	103017661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026551)	promoter-TSS (NM_026551)	-14.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	6.4913419515896	6.70343059589485	6.49438039956371	6.52992545702713	6.78570459809507	6.141138971586	-0.0662385258377543	0.827019067139428	0.959329205076361
Merged-chr2-35199703-5	chr2	35199218	35200218	+	776.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	1402.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	5.75818156258499	5.98408016234039	5.82005949424983	6.29288815192506	6.30722040932071	6.22652496320346	0.713816446034648	0.0138295917325384	0.125680719624405
Merged-chr16-35771204-2	chr16	35770707	35771707	+	705.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 1 of 8)	RMER17C|LTR|ERVK	821.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	3.60644712829367	3.4422683462655	3.51581908188172	3.7066565849538	3.24616595751435	3.23461037459216	-0.389868417557184	0.535993426912883	0.853780673977587
Merged-chr9-114788925-2	chr9	114788457	114789457	+	722.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027294)	TTS (NM_027294)	-6964.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.77497455520979	3.71295583500048	3.90109732045254	4.37801276687346	4.63313627103763	4.4001592721024	2.00936330508962	4.837886507278e-05	0.00153704032263302
Merged-chr5-146767855-3	chr5	146767368	146768368	+	985.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	27088.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.30714349241365	4.6180235234439	5.04246914643144	5.35100422019902	5.4476284055803	5.41455926491034	1.56605165850171	0.000197491628147841	0.00496311790846438
Merged-chr15-7114065-4	chr15	7113516	7114516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15556.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	3.13318947645298	2.81731817732787	2.97127390478157	3.0263035062972	2.88118690749996	3.10292452120146	0.0965070428864947	0.889623833776411	0.974254013699231
Merged-chr14-120741074-2	chr14	120740574	120741574	+	727.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170120.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	3.33651641869972	3.24719091555745	3.16484241633373	3.19564508599321	2.7979585913338	3.1789100275547	-0.816477539477585	0.241144684060866	0.638286260062874
Merged-chr1-152623955-3	chr1	152623437	152624437	+	873.7023929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346118, intron 2 of 18)	LTR78B|LTR|ERV1	1280.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.45899751204668	7.64814345881551	7.43049635104996	7.70649794917659	7.84010536439704	7.45530877033697	0.240025343690824	0.317685719239125	0.711502260156078
Merged-chr6-47471900-1	chr6	47471400	47472400	+	672.0	f0_balb.idr	intron (NM_001355550, intron 1 of 21)	MTEa-int|LTR|ERVL-MaLR	17143.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	3.11264681556618	3.39697338507587	3.2870188097188	3.25831176852525	3.1159053400397	3.24504572646092	-0.280656097524691	0.65875873549476	0.905072911096446
Merged-chr2-165027374-1	chr2	165026874	165027874	+	763.0	f0_balb.idr	intron (NM_144892, intron 1 of 7)	intron (NM_144892, intron 1 of 7)	7405.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	2.63107927450627	2.55832069290287	2.52853027794265	2.72394010194863	2.51203822187587	2.73006934181623	0.451755438081955	0.557390788204384	1
Merged-chr8-56439628-4	chr8	56439138	56440138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45330.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	3.94886064994565	3.87299043582946	3.73231581232235	3.77183658291092	3.87917248154281	4.1422427713409	0.22711412596979	0.666217223224168	0.908049448139768
Merged-chr4-95048248-4	chr4	95047733	95048733	+	871.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010591)	TTS (NM_010591)	3989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.9318961449924	2.76725357659552	2.90675434245084	2.86468576077274	2.76952760067134	2.79600182767743	-0.300305832991031	0.671632193852776	0.910573176861295
Merged-chr11-32717040-1	chr11	32716540	32717540	+	948.0	f0_balb.idr	intron (NM_001271347, intron 3 of 12)	intron (NM_001271347, intron 3 of 12)	74485.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.93487115140961	2.82552438911215	2.87720173595236	2.64169951404735	2.48453233195327	2.6390130824228	-1.68576070875203	0.0303497743452743	0.210462873882955
Merged-chr6-124711306-2	chr6	124710806	124711806	+	648.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007531)	promoter-TSS (NM_007531)	872.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	5.25150840212618	5.43714884162123	5.17932024716485	5.48070832736294	5.34477877933873	5.3101113838914	0.158723472463842	0.646896879460187	0.90114476203283
Merged-chr1-52307216-3	chr1	52306699	52307699	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73967.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	3.7371636990303	3.96998118351958	4.25719994803985	3.22091356966736	3.35252155247729	3.29510380565644	-2.599579962703	7.34820075759643e-05	0.00218367531656459
Merged-chr1-151583691-4	chr1	151583210	151584210	+	878.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	12337.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.34532861046583	6.27959603614913	6.14247118466711	6.20099684073843	6.36673177656088	6.44072817039278	0.120498389063827	0.665876057626648	0.907944784370126
Merged-chr1-53265156-3	chr1	53264633	53265633	+	878.015869	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153556, intron 4 of 12)	intron (NM_153556, intron 4 of 12)	31895.0	NM_153556	227099.0	Mm.60499	NM_153556	ENSMUSG00000026098	Pms1	-	PMS1 homolog 1, mismatch repair system component	protein-coding	3.46808708340351	3.71448457324521	3.42750422592131	3.53931085929329	3.5034031307043	3.71436242419566	0.12091745485093	0.834746123040293	0.96138272464184
Merged-chr9-120073310-4	chr9	120072787	120073787	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4991.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	3.23526696212032	2.97277646516984	3.00642754287036	2.96049537394887	2.75030573205131	2.82955971260201	-1.12038317528916	0.116793079020486	0.45631396530669
Merged-chr11-107316156-3	chr11	107315685	107316685	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	MLT1A|LTR|ERVL-MaLR	-126804.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	5.39145428113737	5.37244014377487	5.52612665506465	5.14749929517292	5.14036994823171	5.29845803348821	-0.470480931385358	0.171022668095614	0.548963962743078
Merged-chr4-41347541-2	chr4	41347041	41348041	+	660.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1455.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.07904014047198	6.07176100859112	6.37955360828719	6.45084655102754	6.2405134797858	6.52603985574526	0.381419296984987	0.188514137648968	0.574100439060177
Merged-chr1-181853221-2	chr1	181852721	181853721	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10820.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	5.48874956188702	5.38383071634107	5.18086676989726	5.39138479091451	5.4040183696765	5.17591574191344	-0.0596949133243053	0.86488206719561	0.9684444495655
Merged-chr10-82699773-4	chr10	82699243	82700243	+	949.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081218, intron 1 of 14)	CpG	736.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	6.13732450550626	6.28726220896077	6.08333016371296	6.71188971383911	6.51170452134363	6.16761381040118	0.517076540532552	0.0832015782046641	0.381581707504475
Merged-chr7-3693213-4	chr7	3692707	3693707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164205)	promoter-TSS (NM_001164205)	318.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	7.56105869143266	7.61924493782214	7.71779064903121	7.73534850080667	7.89754562709405	7.57061621633287	0.169984956313352	0.458547904601993	0.813092374952408
Merged-chr7-126799265-4	chr7	126798769	126799769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-15.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	8.48843980562984	8.37791794198663	8.19843149825685	8.10988882260047	8.3576606713564	8.38362335868694	-0.105124744394978	0.63461716655885	0.896354115104213
Merged-chr7-105752214-4	chr7	105751717	105752717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009906)	promoter-TSS (NM_009906)	18.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	7.91512490215837	8.40258531457867	7.60489331027411	7.98184873296692	8.10387528387773	7.56907298550649	-0.162820529287224	0.582571852639298	0.87378634860748
Merged-chr4-136894897-4	chr4	136894425	136895425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007572)	TTS (NM_007572)	-2011.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	7.22229488282556	6.99145993123418	7.26084097954683	6.59795639451746	6.61359244722884	6.45997602082884	-0.920735563116998	0.000342546347292047	0.00776637505871299
Merged-chr3-136898466-1	chr3	136897966	136898966	+	629.0	f1_balb.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228400.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.28372744060242	4.13371097100793	4.49031393205026	4.66293064750738	4.32711896734738	4.71051235714816	0.683244508035502	0.13826645613661	0.496960021384664
Merged-chr1-136568863-2	chr1	136568363	136569363	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56038.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	6.77508647520999	6.92481974320546	6.67883012496231	7.24496845002757	7.46547159360602	7.1205799127621	0.742276613214348	0.00365897017877659	0.0487206898120727
Merged-chr6-83482623-4	chr6	83482133	83483133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 4 of 6)	intron (NR_149734, intron 4 of 6)	24336.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	6.43291435583202	6.28380689773291	6.24796975412113	6.05547337055948	6.17399041055801	6.30797987876882	-0.24939095830563	0.375718353016365	0.758886605954294
Merged-chr10-12964434-4	chr10	12963884	12964884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029075)	promoter-TSS (NM_029075)	-125.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	6.25826755258095	6.34006582030417	6.2999978083016	6.4419702381855	6.33185553309482	6.27982505156579	0.0905235055734613	0.738204002790908	0.933990122267208
Merged-chr13-104610695-7	chr13	104610183	104611183	+	993.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206270.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	6.37448261372637	6.50846234966855	6.3106358308853	6.76246821217729	6.92993647563355	6.9612534401366	0.759009926469496	0.00372349753010687	0.0493430136144501
Merged-chr8-70648161-2	chr8	70647661	70648661	+	890.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	11577.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	4.04130849375224	3.61983392489074	3.88613651869253	4.44598058514681	4.48541446810123	4.7011529909231	1.91940668456733	0.000188323115438388	0.00475713108360577
Merged-chr11-119091571-4	chr11	119091117	119092117	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	5.85597759808873	5.47181362726744	4.84894021057183	5.26424985855255	4.82546904568967	4.69301140203785	-1.02582522488588	0.0271200922394103	0.19617566157149
Merged-chr14-31129051-4	chr14	31128558	31129558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-128.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	7.24163855587733	7.3273873000925	7.05290038662034	7.06196784094656	7.43325101662853	6.78279204530763	-0.122691212698299	0.663647278443626	0.907297207161427
Merged-chr17-91159550-2	chr17	91159050	91160050	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-66748.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	2.41120304514668	2.14965642166263	2.35590739119867	2.03003382488088	2.04961686356566	2.16949982807885	-1.74188235374374	0.0654488886741812	1
Merged-chr19-4163377-4	chr19	4162900	4163900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021485)	promoter-TSS (NM_021485)	-17.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	6.3945123302312	6.32722571871254	6.34467704517012	6.58010913712971	6.51135041527196	6.15216113306974	0.134596389355063	0.634586340543327	0.896354115104213
Merged-chr2-3645470-2	chr2	3644970	3645970	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67988.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	3.18035694643831	3.28462060641695	3.3172642429591	2.90926897727026	3.0883751986458	3.43977554441741	-0.42606725862327	0.530251721604096	0.851070276054813
Merged-chr5-39820667-2	chr5	39820167	39821167	+	657.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176036.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.88899338255422	3.35183514445972	3.26867089288191	3.81540121850522	3.51046644296824	3.79901766906178	0.585394550299423	0.368100823862944	0.753071728756585
Merged-chr8-120793592-2	chr8	120793092	120794092	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54953.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.80230714207849	3.61329652060314	3.70424758036545	3.85275406850723	3.60158679431093	3.66814462370002	0.00439825491941876	0.993576988434704	0.998702045803685
Merged-chr11-58927851-2	chr11	58927351	58928351	+	583.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138678)	TTS (NM_138678)	9794.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	6.86005666355283	7.15486196089886	6.93601168908374	7.40046269733764	7.71737973690237	7.43499653815899	0.800599244884645	0.00154554412059808	0.0252705119250787
Merged-chr13-58516512-4	chr13	58516009	58517009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	94368.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.52368228767569	4.18886503578878	4.04604435356141	4.49752914187978	4.42252578296093	4.31591492912309	0.359429561941883	0.450831857447171	0.808622732738337
Merged-chr16-44347551-4	chr16	44347060	44348060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	CpG	159.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	6.80390341499642	6.83941147079753	6.69126823538585	6.67196394357553	6.61443207500214	6.96840324442174	-0.0514544831092687	0.845056446635931	0.963760118842549
Merged-chr5-64803216-4	chr5	64802746	64803746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008453)	promoter-TSS (NM_008453)	-277.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.996355776025	7.50631741190753	7.4791170345159	7.71593495932941	7.16759499601131	7.25497542200821	-0.41341077862227	0.151809719665757	0.519559786042007
Merged-chr2-23015928-4	chr2	23015444	23016444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	24297.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	6.95742167143072	6.46081308161561	6.80462627153567	7.54116268265834	7.50932814559934	7.10541546164782	0.981819482126323	0.000482580290406439	0.0102226427709111
Merged-chr10-37138488-2	chr10	37137988	37138988	+	958.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 1 of 2)	exon (NM_008538, exon 1 of 2)	438.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.70528673923203	8.08208977916716	7.97406790905558	7.66654534813232	8.11485634920221	7.99350375795759	0.0158938835848125	0.949195118885116	0.988169196639905
Merged-chr7-45707747-4	chr7	45707227	45708227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 2 of 3)	intron (NM_016974, intron 2 of 3)	2480.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	8.75776236659032	9.08569418033894	8.47620168664156	8.75365543923064	9.31113684308992	8.54258167350086	0.160014497733335	0.578625693093192	0.872437129840066
Merged-chr1-138292276-4	chr1	138291766	138292766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18528.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.51719159655587	4.33504660024825	4.53330829112983	4.33036948857915	4.26421322550543	4.30129531437989	-0.4265174392328	0.335193545905388	0.725385451575238
Merged-chr3-51561751-3	chr3	51561234	51562234	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-911.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	5.78934257937134	5.76613882871119	5.48080884894234	5.49173230202329	5.2201202576994	5.51457092607919	-0.548119410546478	0.106471107834109	0.435652102062224
Merged-chr6-134543840-2	chr6	134543340	134544340	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	23073.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.99297300215449	5.2766356765673	4.85227609959819	5.83775318964048	5.67704406561028	5.73324069263733	1.32243507953477	0.000260811274954327	0.00622000130879899
Merged-chr5-114652993-2	chr5	114652493	114653493	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	5428.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.3923895208645	3.3954126569602	3.58303949220345	3.02419955679977	2.83743282978329	3.10948451437197	-2.14543613398329	0.00205522693234061	0.0316043841408607
Merged-chr2-32167169-3	chr2	32166657	32167657	+	603.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	16009.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	3.26512111653647	3.15484967608565	3.23323156914963	3.22021255612193	3.25546089840286	3.30457923362569	0.171873780896177	0.780610798362398	0.946078518476608
Merged-chr6-55166563-2	chr6	55166042	55167042	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	8448.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	3.25968909585538	3.27587947475942	3.36016037762947	3.22584297633911	2.94992173129018	3.08736414006813	-0.895312363097921	0.169485415785575	0.546370768477266
Merged-chr13-113421674-4	chr13	113421171	113422171	+	944.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81173.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.79161842190294	4.71143780309016	5.09079743068959	4.79599097945042	4.98693691468783	4.64162000380187	-0.0827220246528207	0.841067107877323	0.962832831784718
Merged-chr18-68131423-4	chr18	68130934	68131934	+	957.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-96512.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.75343092714374	3.65899329471363	3.57363748495681	3.5704426528212	3.53306085581617	3.53389757270475	-0.429690884986319	0.439769942446288	0.801357277688079
Merged-chr10-40098641-4	chr10	40098150	40099150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	RSINE1|SINE|B4	43604.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.03809713088854	6.31565267120946	6.38992782304901	6.29890186958618	6.36859370489833	6.48481959333649	0.218288782298376	0.443872148980573	0.803884349333946
Merged-chr6-124733179-4	chr6	124732685	124733685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-31.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	7.03197953006012	7.10875676724799	7.08164869552999	6.90897438092264	7.16345287619787	7.02181887097177	-0.0514239521762978	0.832484492860511	0.960616839788396
Merged-chr17-70818071-4	chr17	70817572	70818572	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347414, exon 11 of 11)	exon (NM_001347414, exon 11 of 11)	28705.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.64799074344822	4.81888151563838	4.50191174941859	4.27810566137948	4.07496980755734	4.39596454804904	-1.09143746072981	0.015636806364778	0.13665730185319
Merged-chr8-119394853-4	chr8	119394353	119395353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-39.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	7.12124301908537	7.3223568514205	7.27388300603668	7.03344537089654	6.63261539756213	6.87210129781461	-0.592777199626012	0.0219483618814681	0.171771942760835
Merged-chr1-133135132-3	chr1	133134651	133135651	+	805.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3985.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	5.12829603255514	4.91559714334007	4.48540572202644	4.78433954167713	4.66556595383981	4.64500815414395	-0.413914013985302	0.338925764925212	0.728919083443527
Merged-chr8-122980091-4	chr8	122979586	122980586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	62198.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.36667455884308	5.28400827781252	5.14560910589362	4.88023090779354	4.78569285992183	4.76352180142427	-0.989394797024105	0.0078243745025783	0.0847501371531548
Merged-chr5-62843028-4	chr5	62842564	62843564	+	900.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001170705, exon 6 of 9)	exon (NM_001170705, exon 6 of 9)	29241.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	5.40382783693591	5.30403614101054	5.4325254842524	5.53851638353748	5.50158992141785	5.52435455987485	0.276236251684116	0.39905532441607	0.775645201570053
Merged-chr8-70627976-2	chr8	70627503	70628503	+	601.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4092.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.29218834087005	3.54897585129839	3.65500736315348	3.41376541250759	3.28402287290426	3.46640174977738	-0.441876931863498	0.46395160602518	0.816058961530106
Merged-chr7-3642861-2	chr7	3642362	3643362	+	570.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027328)	TTS (NM_027328)	-2407.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	3.60678628198371	3.76335429904178	4.06321408231542	3.75189181600134	3.72136410448007	4.29456440167854	0.378994577791736	0.510125842407135	0.84070066529374
Merged-chr13-49381422-4	chr13	49380923	49381923	+	926.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 6 of 6)	intron (NM_001039179, intron 6 of 6)	-39800.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	2.32452133267097	2.35777182509777	2.68527376040967	2.22855135497771	2.14925134838931	2.45893496319469	-1.1875566622345	0.183295083021279	1
Merged-chr9-108309228-5	chr9	108308837	108309837	+	943.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313961, intron 1 of 5)	intron (NM_001313961, intron 1 of 5)	2540.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	5.07928685004199	4.89534628264297	4.99592994696712	5.18996283115829	5.11494095333584	5.54513970723243	0.60701340791298	0.107882215444476	0.438675585418016
Merged-chr11-70778290-2	chr11	70777790	70778790	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13843.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	3.49461293821863	2.90791078392333	3.22359986085459	3.42287446669499	3.40434147197733	3.355079940471	0.62403596544766	0.363844539640021	0.74933829766087
Merged-chr6-134152748-2	chr6	134152248	134153248	+	569.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	117048.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.83972510755468	3.69945713931822	3.82020127782153	3.76828227383774	3.73634267653417	3.51005575925307	-0.341410335498151	0.532886170550673	0.852011692079098
Merged-chr13-64378322-1	chr13	64377822	64378822	+	682.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-7802.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	3.9611208915859	3.92373763139706	3.55389254833037	3.07972502227502	3.18917501031677	3.33349723113945	-2.51350307147473	0.000149527152331672	0.00396489971039316
Merged-chr16-87653129-4	chr16	87652631	87653631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45823.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.89100690171996	6.88773278636297	6.23396406202235	6.75199094767339	6.64560918790238	5.6630302571041	-0.426055390327039	0.528077416866887	0.850369588158163
Merged-chr12-40559307-4	chr12	40558808	40559808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113255.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	7.70230915172731	7.67655110277214	7.18476573771718	7.66512327851799	7.77810023762411	7.55044146734991	0.172566258518012	0.500845908046845	0.835260125938228
Merged-chr2-23571945-5	chr2	23571414	23572414	+	988.980957	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001165997, exon 1 of 12)	5' UTR (NM_001165997, exon 1 of 12)	190.0	NM_029773	76857.0	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	5.88168876381685	6.01996557680188	6.29870881179546	6.16785079869389	5.79772901211113	5.9904142953909	-0.137874620100098	0.663418784392874	0.907207306924834
Merged-chr2-164487205-5	chr2	164486659	164487659	+	800.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048229)	promoter-TSS (NM_001048229)	282.0	NM_001048228	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	6.3990407503602	6.33789119767887	6.18428937572868	5.66463562283361	5.42357846583656	5.54937323268382	-1.36127470625454	7.4626488740734e-06	0.000311879501513761
Merged-chr3-88493090-4	chr3	88492601	88493601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	211.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	7.08650026895548	6.84435228837682	6.51661112728526	6.30781353102201	6.34135568045252	6.11995922194248	-0.926607030101216	0.00158127660242424	0.0257456077949334
Merged-chr4-154856289-4	chr4	154855785	154856785	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172878)	promoter-TSS (NM_172878)	85.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	3.68917637064868	3.75198290360115	3.74622629286519	3.23153883120511	2.98489932371658	3.21127238425799	-2.4931465955771	0.000175400177583955	0.00450036940376371
Merged-chr15-35464701-1	chr15	35464201	35465201	+	559.0	f0_balb.idr	intron (NM_177151, intron 16 of 61)	ORR1D2|LTR|ERVL-MaLR	93155.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	2.64966215393884	2.44969121844102	2.63781087534319	2.41417114331013	2.37675187445698	2.58788110977206	-0.741377322133648	0.357219769277117	1
Merged-chr10-67096341-4	chr10	67095838	67096838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	CpG	650.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	7.76160567696077	7.33821198178575	7.14886762978478	7.15509474257194	7.01802989798965	6.60566154614052	-0.738387297365494	0.0130922289914831	0.121392711157046
Merged-chr14-55672234-4	chr14	55671719	55672719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177992)	promoter-TSS (NM_177992)	-16.0	NM_177992	105446.0	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	6.05592750209767	6.38441961209133	6.41117776657955	6.22178214955124	6.40017011055715	6.21878197172463	-0.000466347762445815	0.998721262187532	0.999767255399497
Merged-chr15-74939475-4	chr15	74938987	74939987	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-15564.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.30854038814025	6.40763369071254	5.96523638271518	6.51734881793569	6.80723649524168	5.94923932734148	0.387984774646567	0.263242331911595	0.661245508491251
Merged-chr17-27057927-2	chr17	27057427	27058427	+	611.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080553, intron 1 of 57)	intron (NM_080553, intron 1 of 57)	623.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	4.23076505963941	4.31032924530889	4.04525906415105	4.01548664682287	3.77623313574611	3.85951358301597	-0.972075226691815	0.0536183416137417	0.296877493278961
Merged-chr4-32573746-2	chr4	32573246	32574246	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	-2084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	2.91211864609436	2.77236643165635	2.94902392939836	2.7164493347263	2.90553284343844	3.07769491006838	0.131278592186098	0.854599881716052	0.965987623019113
Merged-chr11-20202915-4	chr11	20202420	20203420	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	8.36927860739399	8.95140246123331	7.93752673745196	8.419324955295	8.76400167854965	8.2744328837666	0.0132060488665786	0.96601659969144	0.992207077743977
Merged-chr5-66067338-4	chr5	66066851	66067851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30828.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.13822816980825	6.82749920533319	6.8440673179656	7.09165526787747	7.10973242262815	6.76151610050267	0.0872331364195853	0.743414206140474	0.935615824630138
Merged-chr6-145804068-2	chr6	145803568	145804568	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4315.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.66216271815133	4.67326562433901	4.18636966271482	4.43447528902543	3.99664143829955	3.93370929161191	-1.02226190091611	0.0480854375268256	0.27804250403992
Merged-chr7-99053047-4	chr7	99052550	99053550	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	88094.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.4140471138257	7.19128383674553	6.92982739083701	6.86652280744756	7.0459296141672	6.77330972050041	-0.445913709828061	0.0956683640860783	0.412391981116168
Merged-chr18-20644897-1	chr18	20644397	20645397	+	547.0	f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-20353.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	5.40115101754884	5.48089726748678	4.97357741166957	5.10503873693908	5.49402318995391	4.92015682325792	-0.204373568855019	0.616329239850054	0.888323384760338
Merged-chr1-144330517-4	chr1	144330012	144331012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81408.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.18577149711496	6.27423499499505	6.35776631890323	5.98451802966955	5.83941993822304	6.05522711543978	-0.539811014669998	0.0607346399535841	0.319202117310373
Merged-chr11-4527282-4	chr11	4526781	4527781	+	832.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	67534.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.73593661377382	4.56939154295127	4.98659606284278	4.26271955234129	4.29534228636135	4.78267844891175	-0.751994017222679	0.102998172761846	0.427924106528119
Merged-chr4-49632829-2	chr4	49632329	49633329	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182999, intron 2 of 20)	MIRb|SINE|MIR	769.0	NM_182999	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	5.27526686741758	5.62714298102576	5.38782587749478	5.53509819014969	5.57601556968956	5.48159917519869	0.173261946905005	0.609475182536489	0.885217249183895
Merged-chr6-24990150-2	chr6	24989650	24990650	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-34025.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	3.21273336578193	3.25228991484708	3.14747696696205	3.05362316225497	3.08837329864636	3.03942695635936	-0.635535109132564	0.32551406445336	0.718159390122652
Merged-chr12-80257757-1	chr12	80257257	80258257	+	799.666687	f0_balb.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	2614.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.24287055839902	4.23958516812761	3.93430899085526	4.39319520699948	4.34563838567446	4.34973922365884	0.55308916297451	0.241257852478592	0.638385260200477
Merged-chr3-88411922-2	chr3	88411422	88412422	+	725.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178696, exon 4 of 4)	3' UTR (NM_178696, exon 4 of 4)	-1525.0	NM_025928	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	2.80875794394725	2.76255686737974	2.93026103603834	2.7403414178516	2.6528338438952	2.88544859079145	-0.388643414138635	0.591608415852045	0.877710165381539
Merged-chr11-70679581-2	chr11	70679081	70680081	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 10 of 23)	exon (NM_178116, exon 10 of 23)	8524.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	5.8995746553597	5.9172629686728	5.91354141790372	5.99867688354474	5.77091851485206	6.15028077039128	0.106368313869858	0.727618946946487	0.930204882969987
Merged-chr14-31382580-4	chr14	31382072	31383072	+	983.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	35105.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.04523967815955	4.75124626791643	5.44906261688365	5.16242433690367	5.24669174860762	5.34310459076519	0.309620186640823	0.438567561929049	0.800615097962194
Merged-chr17-33929484-4	chr17	33928967	33929967	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-427.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	6.34800515472106	6.69838491703305	6.84538477330597	6.30363095637687	6.72133900790505	7.06999991737162	0.139746204990403	0.66556667974656	0.907855843812957
Merged-chr7-92848447-4	chr7	92847956	92848956	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	25791.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	3.45848940408588	3.4276890494512	3.35635136442387	3.60408446609797	3.68782162144041	3.7535187773375	0.947466294365643	0.0961917623416394	0.413447190501737
Merged-chr11-52360996-4	chr11	52360501	52361501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011694, exon 1 of 9)	5' UTR (NM_011694, exon 1 of 9)	139.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	8.59228776322911	9.08533372774015	8.53052460836122	8.57758540127806	8.75055155823967	8.48089713947743	-0.214671422379468	0.384387659874516	0.765515086260431
Merged-chr9-22468903-2	chr9	22468403	22469403	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	-547.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	5.39852231486136	5.46237419771626	5.60312403791989	5.48345361792294	5.23171546631316	5.28543288539797	-0.2885596471974	0.397649974887751	0.774569227267419
Merged-chr16-76369414-2	chr16	76368914	76369914	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	3635.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.99173879565706	3.69652710101869	3.4554498828401	4.01226557123607	3.59194215093582	3.81401543227947	0.243306166685209	0.682456446346363	0.915096086868746
Merged-chr3-27302905-4	chr3	27302392	27303392	+	900.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14185.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.83379258051712	6.18788430970531	6.04844628268065	5.97566435178802	6.06637797179608	5.82140462097847	-0.114815838959491	0.709089422413222	0.923909555179111
Merged-chr15-8411391-4	chr15	8410878	8411878	+	773.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	33085.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	2.43614917814715	2.80196705349604	2.66809641552757	2.66236324261166	2.6604377794413	2.97889739138808	0.663249203596416	0.406504843386233	0.780750525320999
Merged-chr11-60536581-4	chr11	60536074	60537074	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1109.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	7.20903262448224	7.33125952640855	6.98246733739502	6.77406353711003	7.01260469975728	6.65125057494741	-0.542879518690284	0.0408464584359944	0.252004450806929
Merged-chr14-59555195-4	chr14	59554684	59555684	+	932.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42775.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	3.78998192829268	3.48033545470274	3.77007844643956	3.97889353853662	3.81796391079665	3.93942749197519	0.734176107492939	0.175117518654753	0.554840197075627
Merged-chr19-46762624-2	chr19	46762124	46763124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033569, exon 1 of 8)	exon (NM_033569, exon 1 of 8)	1015.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	3.56667998708699	3.17760637149239	3.31711690330066	3.32636799060327	2.97569513845261	3.27469949183452	-0.684170217539264	0.304244400828112	0.700796370947447
Merged-chr1-164405604-4	chr1	164405106	164406106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138314, intron 13 of 13)	intron (NM_138314, intron 13 of 13)	52749.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	4.88630459289729	4.78395410824112	4.36463758650784	4.81363188856401	4.63237791187839	4.93180483325808	0.187076049403389	0.668066372269565	0.908976375106763
Merged-chr9-45093968-3	chr9	45093469	45094469	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	(TG)n|Simple_repeat|Simple_repeat	14786.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	4.52341004838878	4.19277927682631	4.56801005184918	3.45622691610073	3.53606886790267	3.61961074846892	-2.9534868826922	5.73378255372746e-07	3.32239957333255e-05
Merged-chr19-56396680-2	chr19	56396180	56397180	+	559.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	-449.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	5.37406070181996	5.56766977503198	5.30806375525243	5.22483593701797	5.30316977547914	5.20756317821362	-0.352874614546213	0.306958546783772	0.703099001056797
Merged-chr8-115613048-2	chr8	115612548	115613548	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	93846.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.39763357271884	6.84509660684208	6.89204167291186	6.71729116861038	6.85174972435391	6.80722474209898	0.107211667734047	0.700825379307368	0.921018371024361
Merged-chr2-3519508-4	chr2	3519040	3520040	+	960.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177647, intron 2 of 3)	intron (NM_177647, intron 2 of 3)	6475.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	6.54470908423512	6.71591944814034	6.57301558480919	6.45414658733504	6.6245663580926	6.63203823992272	-0.0695764412154833	0.790785475504027	0.949600977347493
Merged-chr2-170247908-3	chr2	170247429	170248429	+	564.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105254.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.04770671289591	2.72385663582265	3.13438486247244	3.00705846540456	2.76783953423717	2.78815921356618	-0.566538792001236	0.443350103197045	0.803773617218585
Merged-chr6-83503333-1	chr6	83502833	83503833	+	864.0	f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	3636.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	6.17206585998974	6.2161371226852	6.02223651220027	6.28673353799537	6.37969903841325	6.63578771701578	0.478703147193503	0.0951969110360674	0.411148363215922
Merged-chr14-57730050-4	chr14	57729561	57730561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4357.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	5.09731210948141	5.25462650509747	5.31600333710858	5.16257426313182	5.32008770110506	5.92683162062917	0.546303472319515	0.166516927472147	0.541845860588261
Merged-chr13-5800040-3	chr13	5799536	5800536	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58056.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.66755556206119	2.70739124188818	2.4643330235416	2.59605543736529	2.487974430074	2.79345645520142	0.0345338687651729	0.965383929298961	1
Merged-chr11-61929109-2	chr11	61928609	61929609	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	1148.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	5.96405404017519	5.66737114923841	5.83403578437938	6.0205131362391	6.21094405087947	5.87049388387439	0.397677400954206	0.202747933422537	0.592633256759336
Merged-chr10-41963011-4	chr10	41962496	41963496	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	55386.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	2.68730757304554	2.90492159441634	2.67132627059245	2.88938087808941	2.78833767036896	3.27304563995001	1.12228162955245	0.142303038372486	0.503626014074169
Merged-chr11-115685103-2	chr11	115684603	115685603	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	14431.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.90661189312252	5.35659033330486	4.87454381333274	5.12692528701233	4.95814681889645	5.12239005016971	-0.0211206198176144	0.957471997202328	0.98996830630481
Merged-chr2-30827219-2	chr2	30826719	30827719	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	1081.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	4.45897188578961	4.16634186107575	4.12730302008245	4.17023691997021	4.191112622983	4.24362649725401	-0.179022426605706	0.704387386495724	0.922392522355862
Merged-chr16-20373000-4	chr16	20372497	20373497	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-47593.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	6.22534764680531	6.22134383569578	5.85988601575219	5.85869403978443	6.00309780951177	5.41645069092117	-0.560043649332206	0.101862153509731	0.425767120572546
Merged-chr11-69429544-4	chr11	69429049	69430049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 76 of 85)	intron (NM_001081330, intron 76 of 85)	-15874.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.0455446010573	5.83933360684408	6.33196641181253	6.14019376093834	6.25989274317209	6.46196364682902	0.358842375338754	0.244190484982447	0.641434535959679
Merged-chr11-62817949-1	chr11	62817449	62818449	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	-2304.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	2.77064048247236	2.95102250902082	3.11186839243979	2.85783498797887	2.71026114828076	2.58196203228161	-1.1703648748055	0.131265896346712	0.48429799597469
Merged-chr3-148958895-3	chr3	148958404	148959404	+	854.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4269.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.2227935645274	6.34401613960825	6.10443451768151	5.76953399561606	5.98346613250861	4.85266297586823	-1.0919558589049	0.226532331332475	0.621494352781582
Merged-chr9-45282686-4	chr9	45282194	45283194	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13545.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	4.26593261947962	4.36347035864006	3.70120535988142	4.23481408581172	3.92791465462742	4.05329658086711	-0.205163293569549	0.710489926197287	0.924358113435436
Merged-chr2-154402977-2	chr2	154402477	154403477	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009228, intron 2 of 7)	intron (NM_009228, intron 2 of 7)	5107.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	3.4267792785922	3.74890378646142	3.32201104007019	3.4958292066786	3.50398808548918	3.51117436307616	-0.063482119843835	0.915980281687205	0.981201223155309
Merged-chr5-114781074-4	chr5	114780573	114781573	+	793.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	5933.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	3.57142238240428	3.57266312125961	3.47595564294059	3.55298455127206	3.08630031397731	3.60072713777262	-0.419120023454475	0.509812535793161	0.840575466220373
Merged-chr19-8966312-2	chr19	8965812	8966812	+	883.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-729.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	7.86668340854393	8.28302465544864	7.79007038654657	7.93838095392034	8.09026861792829	7.64371423847766	-0.13362349076625	0.608602786615889	0.885006356798728
Merged-chr2-27739679-4	chr2	27739147	27740147	+	979.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29064.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.91821116943268	7.64178428615645	7.88617385623565	7.54976791644622	7.75883535145235	7.66631239909899	-0.225074060349132	0.327718128087807	0.71987249213121
Merged-chr15-100613347-3	chr15	100612793	100613793	+	757.666687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045701)	TTS (NR_045701)	1817.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	4.13581457121904	4.62280695006877	3.94744428358473	3.79267835576093	3.78969850449964	3.96680451223458	-1.25877527983235	0.0198174996353802	0.160421685928662
Merged-chr4-141869814-8	chr4	141869273	141870273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	5147.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.36679435575006	7.35996324268649	7.16244102946361	7.22152129519491	7.46052963878019	7.51785438105447	0.147291778790605	0.540319187045004	0.85632302227606
Merged-chr17-26245436-2	chr17	26244997	26245997	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-1255.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.05460266470708	5.05947428977085	4.67051520649686	4.98216882710069	5.05709149199181	5.15271780509538	0.232771446185457	0.550271867580028	0.86067447804656
Merged-chr16-4906887-2	chr16	4906387	4907387	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	MLT1C|LTR|ERVL-MaLR	20787.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.9690642837761	5.02182647783494	4.94509835231192	5.1342516169173	5.35229295991083	5.25086816697558	0.565353957622814	0.117333652078944	0.457373677606331
Merged-chr17-10390896-4	chr17	10390392	10391392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65324.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	6.93638194169864	7.12787742669275	6.73333820121124	6.64423575757669	6.79196839105121	6.7603464689103	-0.336086284916652	0.199688453566818	0.588248843885427
Merged-chr15-27682815-4	chr15	27682290	27683290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1248.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.15792655670713	5.22001727316133	5.13955088282359	5.27270476573266	5.23407103248606	4.82710791195913	-0.0728565543167638	0.8463150258999	0.963987423586105
Merged-chr10-15300877-3	chr10	15300381	15301381	+	827.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-490896.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	3.93200553142056	4.03389744097292	4.20268702264118	4.09340609292333	3.97415058622451	3.83880543236505	-0.231004923077163	0.645964958022124	0.900808678472631
Merged-chr10-117829907-4	chr10	117829364	117830364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16110.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.84491069311323	6.5960389653983	6.68113258603373	6.74705630141057	7.12179339007475	6.6906606255177	0.25945527584838	0.348208153859118	0.736088365340327
Merged-chr16-57180659-2	chr16	57180159	57181159	+	634.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-13327.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	5.63758725841094	5.86008545751085	5.91767513978345	5.63077486510342	5.8873664069935	5.88514127307546	0.00271667770472459	0.993152675780296	0.998651348330892
Merged-chr9-118821745-3	chr9	118821217	118822217	+	810.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-104819.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.46363404848769	2.47008657753896	2.54391842170541	2.74536818784786	2.60849845203393	2.97990249017433	1.65905403915196	0.0371326390591573	0.237799786872498
Merged-chr10-127585829-2	chr10	127585329	127586329	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	L2|LINE|L2	35319.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.8971371179726	4.79432321770171	4.98013614756684	4.52246297130304	4.53474265102006	4.79827496865639	-0.63536008605693	0.117194293656444	0.457237435483911
Merged-chr1-106933883-4	chr1	106933381	106934381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027971)	promoter-TSS (NM_027971)	-568.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	4.29003922474149	4.38123638459748	4.359816040442	4.15666146430447	4.4563607316843	4.55039212650245	0.13607434698883	0.764761527300218	0.942046176310479
Merged-chr12-108758091-4	chr12	108757599	108758599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35212.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	5.17231416003502	5.23212602084986	5.38026712971465	5.19212543038683	4.92075091393074	4.95076289041898	-0.482281855807697	0.189510424343299	0.575408333481576
Merged-chr11-22653170-4	chr11	22652695	22653695	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	140912.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	5.31787419898576	5.43604208172373	5.11923495485394	5.38055543986489	5.5186425482092	5.35301259079199	0.229651219127028	0.508973857583037	0.840158243567873
Merged-chr10-25441517-2	chr10	25441017	25442017	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	33149.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	2.85418959164528	2.93239188526145	3.2139846051205	2.94747939188221	2.69960930719035	3.00763801480218	-0.557886157792382	0.440773528508889	0.801967806487315
Merged-chr2-173659702-4	chr2	173659204	173660204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027957)	promoter-TSS (NR_027957)	-141.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	6.91778942301459	6.93937109789501	6.89498085404013	7.12942574086975	6.88176699148327	6.89537893869492	0.0853109513964947	0.730372038224588	0.930884711548651
Merged-chr15-39784091-4	chr15	39783611	39784611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-12934.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	4.62522137024187	4.62776402935403	4.47197481582013	4.62166706834609	4.46561687339896	4.40574915254058	-0.196289913689127	0.644238604401378	0.900136110607859
Merged-chr1-132140330-2	chr1	132139830	132140830	+	686.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	-645.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	3.07818351042865	3.05168625838976	3.17295177266488	3.01515298031832	2.96318629222405	2.88839510591746	-0.650867924313441	0.332898188183676	0.723927708416112
Merged-chr4-101155743-4	chr4	101155256	101156256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86718.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	6.64859755975685	6.82862286489277	6.56248762401674	6.05365534399855	6.13965931157912	5.93754204631021	-1.04219369992204	0.000203405900962262	0.00508410880362508
Merged-chr18-36472490-4	chr18	36471978	36472978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17983.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	8.01327501872687	7.78161142802386	7.26341827323341	7.63567129476807	7.74058671352471	6.97182873096306	-0.330769493206985	0.302326549932406	0.699010435889063
Merged-chr1-64875919-3	chr1	64875426	64876426	+	885.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	L2a|LINE|L2	80898.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	6.01846301147364	6.60597422488926	6.29794791032859	6.01392658322184	6.19509964325787	5.9906112840954	-0.433740294959906	0.171301964302163	0.54932102877065
Merged-chr8-91108359-1	chr8	91107859	91108859	+	775.0	f0_balb.idr	intron (NM_011250, intron 17 of 21)	L1M4b|LINE|L1	25380.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	4.19103307248936	4.04517345181577	4.36216484525763	3.84609087945511	3.75571757140933	4.17765296783645	-0.800728311020527	0.120518051081413	0.464240821924086
Merged-chr1-171619213-4	chr1	171618717	171619717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11807.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	7.30618931138558	7.44351958211816	7.32291109747478	7.10920349998467	7.56951249207956	7.27755065691763	-0.0286795971220711	0.909757635726709	0.979619449666744
Merged-chr2-155819257-4	chr2	155818769	155819769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-66.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	7.50144925339209	7.60423684082285	7.45130976269288	7.50749130704344	7.63424837817485	7.46649642719313	0.0275403119659519	0.90266488191164	0.977580005571747
Merged-chr5-45668491-2	chr5	45667991	45668991	+	734.333313	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073433)	TTS (NR_073433)	1217.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	3.03036693681495	2.98265262913911	3.27258899312763	3.10107991899471	3.12072414792294	2.9990616434375	-0.0741201686950584	0.911371812601805	0.980089251983496
Merged-chr9-116133068-2	chr9	116132568	116133568	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	42295.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.40180508332927	3.77712904779435	3.48466413868235	3.25862321077963	2.89430296664128	3.27315932588413	-1.73016060838311	0.0120079641628833	0.114335391003303
Merged-chr13-5804403-3	chr13	5803912	5804912	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53680.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.79636913397666	9.18605183192085	8.39323369565899	8.48110378005482	9.01661892045437	8.44240539939182	-0.217231063872387	0.455667211005604	0.811093409198074
Merged-chr19-43519729-2	chr19	43519170	43520170	+	802.950012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4935.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	5.11604577912308	5.33970524586347	5.48929669006386	5.11214635600913	5.143027837688	5.26039302715819	-0.297526469632482	0.408100196689081	0.781926100186554
Merged-chr7-67373266-4	chr7	67372761	67373761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-403.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	8.62969973500913	8.84861694194917	8.44099243238083	8.54116064876153	8.77963389424634	8.73729270210782	0.0485722839879194	0.827658664757315	0.959499015069944
Merged-chr13-106945720-4	chr13	106945220	106946220	+	927.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1409.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	4.25593632639397	4.11063176495828	4.29724960166915	4.26270748823717	4.38727605666929	4.32055587634908	0.291507712752248	0.521271246707051	0.846938187698154
Merged-chr2-15049319-4	chr2	15048815	15049815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165942)	promoter-TSS (NM_001165942)	-3.0	NM_001355685	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	6.53836882822182	6.82088103292688	6.54637974870234	6.72617472839192	6.94051844857365	6.6057928919506	0.198825372088624	0.466995379580629	0.817728681977829
Merged-chr11-103354226-4	chr11	103353729	103354729	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	9463.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	5.79088388093349	5.38836704923155	5.11886774327205	5.48877899629397	5.45196603820335	5.29131181548856	-0.11171834762527	0.766172234502809	0.942366894267556
Merged-chr6-85380678-4	chr6	85380176	85381176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6042.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	3.82183809818756	3.7458477023137	3.77477272784359	3.44829902062271	3.40911874867461	3.79461760223031	-0.797477214545482	0.161249784795305	0.53399893962969
Merged-chr11-8622971-2	chr11	8622471	8623471	+	792.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	41564.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.67304077948484	3.74480960593369	3.56349784667866	3.4312715489264	3.36452660108786	3.34937932451466	-1.05057887638642	0.0705837918119823	0.348244064577019
Merged-chr1-87026207-4	chr1	87025724	87026724	+	914.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	Lx8|LINE|L1	63704.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	4.42311527266751	4.46733632547101	4.87882833255201	4.22788434411514	4.40418843489065	4.50563975108018	-0.534122771552817	0.24309449580658	0.640367862483409
Merged-chr4-140957982-4	chr4	140957483	140958483	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045911)	promoter-TSS (NR_045911)	-81.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	4.41591773710307	4.19505382956752	4.03219490790532	4.55187358409719	4.53581043676527	4.10269680658159	0.506074600215554	0.305129772352286	0.701418297038126
Merged-chr5-62846455-4	chr5	62845963	62846963	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	32640.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	7.22176312741322	7.03155943026986	6.90607699036925	6.68898601785951	6.92546618936012	6.61376993278588	-0.469485676919874	0.0756963520916712	0.36229025284676
Merged-chr11-68441156-4	chr11	68440650	68441650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	9025.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	3.86551271775544	3.76966649824739	3.94665403238168	3.97462363749745	3.64086308946576	3.81777652406226	-0.141148498601074	0.790242625448879	0.949368241827272
Merged-chr2-98666870-1	chr2	98666370	98667370	+	1000.0	f0_balb.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199213.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	14.6198723051038	16.135798801284	13.8947599796519	15.4424526512765	15.2503334521581	14.2992722092875	-0.216741501655267	0.805268698031838	0.953818528745366
Merged-chr4-141766578-4	chr4	141766093	141767093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 12 of 14)	intron (NM_172338, intron 12 of 14)	19918.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	7.29587058883317	7.1492395020558	6.81899525946153	7.16769447434056	7.26443292576856	6.89324974719046	0.0204589024561024	0.939725940768967	0.986731489878728
Merged-chr1-121327382-2	chr1	121326882	121327882	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178082, intron 1 of 5)	intron (NM_178082, intron 1 of 5)	296.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	5.8904745487748	6.04130593659877	5.77881670224143	5.94569682033293	5.9201850910575	5.9405431991023	0.0324144622803868	0.913697170990777	0.980796798598326
Merged-chr6-89315107-2	chr6	89314607	89315607	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29382.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	2.11439487669926	2.00800040995556	2.31254062751234	1.91630693336728	1.86967670630624	2.19788496564793	-1.16543345256508	0.238951428436935	1
Merged-chr9-113708106-5	chr9	113707552	113708552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164677, exon 1 of 18)	exon (NM_001164677, exon 1 of 18)	207.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	8.29423568216945	8.55834815224656	8.18184864983647	7.93193811484707	8.20733272239811	8.02655314053672	-0.414920953448441	0.0723641954760921	0.353320031520636
Merged-chr15-86206127-2	chr15	86205627	86206627	+	867.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8332.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.11713421238672	5.87379320561838	5.96204192176367	5.74854579125883	6.09471793158682	5.87888851097021	-0.113872771824965	0.713988593707221	0.925656547968876
Merged-chr11-83291648-4	chr11	83291158	83292158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028363)	promoter-TSS (NR_028363)	-41.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	6.15478398815945	6.58295068261939	6.11782222031986	6.19172255981927	6.30599413977715	6.0878317961453	-0.18043553719229	0.555052113091741	0.863105517214307
Merged-chr8-119837616-3	chr8	119837123	119838123	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2956.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	5.42479731091401	5.32340681923715	5.62826995089153	5.40859104078689	5.50154839167691	5.17966605170159	-0.144374662821786	0.679877370442457	0.914056754309378
Merged-chr16-91597026-2	chr16	91596526	91597526	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	654.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	5.66772645416625	4.9580038115024	5.52522718186741	6.04703744329876	5.66000754447468	5.58857206467867	0.678113157869902	0.0821875045901117	0.379123019025808
Merged-chr1-64617744-4	chr1	64617239	64618239	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-571.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	7.32121920759835	7.48906733555278	7.48769874537642	7.31097319113748	7.72430495462032	7.58334353299311	0.178083064171842	0.466523471620139	0.817586753758551
Merged-chr13-60893360-2	chr13	60892860	60893860	+	753.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	4087.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	6.53069079077889	6.74056865659203	6.77347465509341	6.70257002294378	6.94336400675305	6.7397522522733	0.193658626742644	0.460531000453286	0.814520074002194
Merged-chr2-117342876-4	chr2	117342364	117343364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	13.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	8.3497456613377	8.36737808167357	7.58664164773237	8.47674322056952	8.72233054440978	7.80289911779374	0.335561856687556	0.308099815050995	0.70412176689179
Merged-chr4-132488777-4	chr4	132488262	132489262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21694.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.95791217029689	5.8038369968729	5.9497536787515	5.63717544937477	5.56778720678351	5.74511831130852	-0.467649117512636	0.129127663797936	0.480618862493977
Merged-chr8-94999095-2	chr8	94998595	94999595	+	701.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	14696.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	3.34990671512398	3.26200708499348	3.37547620623605	3.11567380433102	3.06228003363515	3.49774693113012	-0.397271006847188	0.538903854972274	0.855566807817691
Merged-chr15-83564351-4	chr15	83563859	83564859	+	834.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009775, intron 1 of 3)	intron (NM_009775, intron 1 of 3)	786.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	4.86806269923714	4.96957115522577	4.59780574360688	4.85848393146071	4.61794910052762	4.48748789852518	-0.378322618848978	0.37242780648733	0.756252847260604
Merged-chr7-25689334-4	chr7	25688816	25689816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 1 of 6)	CpG	2314.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	7.62813403693555	7.78499398026865	7.24396742211515	7.62849028348929	7.73450977772557	7.46293206737655	0.0531515794750357	0.836277215853078	0.961960888484752
Merged-chr1-87848978-3	chr1	87848364	87849364	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4423.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	5.77960211007565	5.7381248171077	5.25462680847343	4.81329856967301	5.209593424806	4.95280017873855	-1.20691014825895	0.00204449207757924	0.031516587307322
Merged-chr5-127608738-4	chr5	127608235	127609235	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	8657.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.84029810740415	6.27424520622632	6.41308720675926	6.17941186678635	6.04528816647865	6.70849400499906	0.234562300325123	0.497811805202964	0.833791434757709
Merged-chr14-32932650-3	chr14	32932151	32933151	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-58731.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	5.07647304208004	4.92882092192604	4.75010127053449	4.53475294737773	4.61021356152413	4.42726967197825	-0.927222307350996	0.0254946465908053	0.189279578594091
Merged-chr6-86447213-6	chr6	86446723	86447723	+	937.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243741, intron 3 of 9)	intron (NM_001243741, intron 3 of 9)	8577.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	5.09684359706057	4.96047065159868	5.38106208314052	5.21288386535736	4.83440199709499	5.35837162854721	-0.0127494721553116	0.974477699195202	0.994277696099795
Merged-chr15-31342176-4	chr15	31341661	31342661	+	986.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25598.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	5.233860039136	5.26851568115444	4.94001259242425	4.66293731449034	4.35498104586244	4.31008015029688	-1.6292842903718	0.000128564613218308	0.0035085616059918
Merged-chr5-99212335-3	chr5	99211804	99212804	+	869.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40623.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.66884079077616	2.83620947665961	2.83069458701879	2.74618337027777	2.55562503498858	2.84361403342805	-0.344143433234288	0.64550154270076	0.900579782638149
Merged-chr11-60091211-1	chr11	60090711	60091711	+	757.0	f0_balb.idr	Intergenic	Intergenic	-13802.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	2.57878501013342	2.3453138109949	2.59560986579505	2.32304911293731	2.50445302707924	2.48120870989957	-0.420916114610174	0.609850272092888	1
Merged-chr10-19008813-3	chr10	19008333	19009333	+	981.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	3130.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.52749815471118	7.25054056128768	6.7821345465512	7.09336972093298	7.35299609656729	7.02362045600902	-0.0941568938185079	0.748510622048132	0.937057639195805
Merged-chr5-121398694-3	chr5	121398184	121399184	+	780.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	702.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	5.69528550707471	5.97036939921662	5.49753235963187	6.26161249356565	6.10116960891056	5.76933629388101	0.56052816996255	0.0971894880434397	0.415674269911001
Merged-chr14-55737156-2	chr14	55736656	55737656	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8528.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	7.11133019596494	6.96861393979553	7.28570513533714	7.24086236589227	7.5393043543169	7.23981547930616	0.348551017402629	0.167147619078241	0.542794328855415
Merged-chr2-11637288-4	chr2	11636789	11637789	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5503.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	3.31243299886048	3.67854728257627	3.65077111889523	3.42074317812814	3.56908617211831	3.76932189302886	0.117028453032867	0.844362982120232	0.96373428957366
Merged-chr7-142442847-4	chr7	142442365	142443365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 1 of 5)	intron (NM_009405, intron 1 of 5)	397.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	5.63550007657039	5.49153334134805	5.67148568016245	6.28876846046766	6.26536964004213	6.60623720740361	1.37346628150889	7.19791121730186e-06	0.000302334071968326
Merged-chr8-71288691-4	chr8	71288131	71289131	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	B3|SINE|B2	15917.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.34975495962423	7.45559694341554	7.40023128923659	7.12215348744278	7.63222172865597	7.30300545966134	-0.0349772069454836	0.891358055377466	0.974795270136864
Merged-chr16-26581627-4	chr16	26581147	26582147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134103)	promoter-TSS (NM_134103)	-58.0	NM_001159318	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	4.77908012647446	4.85506231210362	5.16691889944222	4.70265587044559	4.58081926400829	4.79517073997321	-0.559102773873784	0.170039122682651	0.547292871738279
Merged-chr9-98987126-2	chr9	98986626	98987626	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011810, intron 1 of 4)	intron (NM_011810, intron 1 of 4)	753.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	4.94513526958694	5.22696362408919	4.93347821934353	4.74786458023514	4.65954226748267	4.5539433009911	-0.872753969801265	0.0295770457539757	0.206932382333878
Merged-chr8-88698074-2	chr8	88697597	88698597	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	1069.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	4.99101762889386	5.37685845268599	5.38766400022962	5.50759091397266	5.82167034086536	5.4512203199432	0.682479001546479	0.0601523457532197	0.317565914944096
Merged-chr13-110541518-4	chr13	110541029	110542029	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	146485.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.45999644957022	5.23696499637546	4.82569302517614	5.23343109722535	5.06603401186529	4.80936788945069	-0.33203428066238	0.421088972982059	0.790122251976347
Merged-chr19-46514301-2	chr19	46513801	46514801	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 3 of 5)	ID_B1|SINE|B4	12653.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.82284257451587	3.82970636487976	4.13424599555845	4.00203984342698	3.743181975623	4.28498329014098	0.267054966017326	0.619878565666885	0.889979882381751
Merged-chr5-34243512-3	chr5	34243032	34244032	+	647.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	44792.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	4.03699067961721	4.20479338087764	3.93958906836583	3.36654154344045	3.35423421607013	3.64783123652775	-2.17491306717401	0.000195618416625909	0.00492347768015991
Merged-chr8-110340496-2	chr8	110339996	110340996	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172916, intron 8 of 86)	intron (NM_172916, intron 8 of 86)	73519.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	3.30680046200024	2.97623523228364	2.918522059509	3.71089526805281	3.24551839310933	3.37577488164807	1.5162805885484	0.0346716345768577	0.228273203914661
Merged-chr6-38971777-2	chr6	38971277	38972277	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	ORR1B1|LTR|ERVL-MaLR	52791.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.53422231405053	3.24191896650049	3.34499402324367	3.66717553171563	3.58826489084048	3.8402781026873	1.14035865220579	0.0554712152795276	0.302864099801767
Merged-chr2-160620228-7	chr2	160619699	160620699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25698.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	7.28897934374847	7.33995557218415	7.06277409184784	7.24208962629166	7.30708117689732	7.03906946730671	-0.0520372123583479	0.832460685655362	0.960616839788396
Merged-chr14-19715117-5	chr14	19714621	19715621	+	723.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36136.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.9427650786061	5.46793530986725	5.46247802756218	5.17930337749545	5.10698294836136	5.29183964443372	-0.243678866293721	0.523786106478105	0.848428438699863
Merged-chr10-127421149-4	chr10	127420637	127421637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168293, exon 1 of 24)	5' UTR (NM_001168293, exon 1 of 24)	270.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	6.96823089056941	6.78802436926388	6.71157076086361	6.98265318833521	7.1069817880024	7.09932361246906	0.354720081890702	0.153932325250294	0.523087753015605
Merged-chr17-87283997-4	chr17	87283475	87284475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1089.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.62093579169258	6.40236581838865	6.21013640480861	6.06788511767349	6.03320776637064	5.92335006687164	-0.69863869339617	0.017154789110637	0.145760557140357
Merged-chr6-37420237-2	chr6	37419737	37420737	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	21911.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	3.94578711624555	4.32086917410549	4.16024634655239	3.94174346174162	4.5427346718494	4.3193224520586	0.392268454811998	0.448828347266581	0.807454029128485
Merged-chr13-102894535-2	chr13	102894035	102895035	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134280.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	4.57420577479035	4.52870773321987	4.39384447473071	4.11673599521744	4.42807912377333	4.46120147472854	-0.411995796485705	0.361703031218476	0.747458707295016
Merged-chr2-135503802-4	chr2	135503304	135504304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79416.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	4.03563106621744	4.01161340853747	3.64833018917223	3.58282616208995	3.73916455889131	4.11802522048327	-0.279064591334995	0.625510166725738	0.892513881101067
Merged-chr17-48270906-4	chr17	48270416	48271416	+	919.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	6621.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.27427767172104	5.04578233903158	5.69617112727061	5.38031159060785	5.19293608925447	5.53002711113829	0.0261695644079936	0.94579033367279	0.98796006280508
Merged-chr6-54682255-2	chr6	54681757	54682757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289741, intron 1 of 4)	CpG	633.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	5.77162721971484	5.81462083442796	6.1802606137948	4.94171966849409	4.72912611862549	5.22883549727554	-1.89271624166795	4.13632994320247e-07	2.49041781413886e-05
Merged-chr7-106759004-4	chr7	106758503	106759503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5617.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	4.44032160608848	4.72347452328046	4.92952063181636	4.80228659555066	5.20280418475498	5.27954019621408	0.892967866099286	0.0344756891048492	0.227490336164654
Merged-chr17-69197892-4	chr17	69197386	69198386	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	38530.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	4.58909612229931	4.43953423309703	4.66262018546979	4.79722572961466	5.14546115801379	4.60423628550187	0.746083484097677	0.0825106990604841	0.379962933611421
Merged-chr8-122566838-4	chr8	122566333	122567333	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1182.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	7.90023380762629	8.24448815671305	8.16602369873232	7.85830208860436	8.33903153026349	8.1217960697941	0.0196593560495219	0.936391708373832	0.986037792257163
Merged-chr16-95707173-6	chr16	95706635	95707635	+	893.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	4728.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.37509289759266	4.78226445989423	5.49257716541508	5.11016456762299	4.91622875518033	5.50174984895348	-0.115095173339913	0.789032555588255	0.949092571737679
Merged-chr11-121226280-2	chr11	121225780	121226780	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252550, intron 3 of 5)	intron (NM_001252550, intron 3 of 5)	2660.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	2.62449864816573	2.59015985523538	3.09033134921971	2.91198544688508	2.69980160979808	2.81804985859423	0.143566509119459	0.85303116014026	0.965597129346461
Merged-chr3-88464604-4	chr3	88464111	88465111	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3429.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	2.69809339769876	2.59404373542297	2.600543861257	2.74986762578328	2.68443568232818	2.85895060536981	0.705914814679584	0.342996271480263	1
Merged-chr2-158133246-4	chr2	158132744	158133744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13148.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.41318530992643	7.49568174822048	7.33788258850428	7.10607638816017	7.17542660749615	7.01187768345804	-0.470415982406651	0.0438702451908914	0.263439598513268
Merged-chr5-135994838-4	chr5	135994333	135995333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023742)	promoter-TSS (NM_023742)	33.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	5.98558331367055	6.17867425670958	6.1538551478943	6.07766871924441	6.12107283546792	6.2545493981999	0.0702406388834035	0.80635371352396	0.954125791654011
Merged-chr5-139150881-2	chr5	139150381	139151381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359097)	promoter-TSS (NM_001359097)	-178.0	NM_001359101	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	3.11661008976189	3.00828509475514	3.04441181293114	3.11818683516953	2.94653719384399	2.80130765742248	-0.426144765130405	0.539902641938899	0.856188660767142
Merged-chr16-20540626-2	chr16	20540147	20541147	+	599.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_009679, intron 4 of 10)	intron (NM_009679, intron 4 of 10)	5167.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	4.09544323631772	4.77455986020145	4.62606514097024	4.34799680179716	4.27297480011084	4.65365157761512	-0.257978259405162	0.602194750745848	0.88225227970428
Merged-chr7-97083737-2	chr7	97083237	97084237	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	ID_B1|SINE|B4	1986.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.87476823491423	4.81196290420835	4.68715094384471	5.37062832771503	5.32659393163607	5.58199466822837	1.29989864598611	0.000500506922737326	0.0105034501959968
Merged-chr7-126500943-2	chr7	126500443	126501443	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361487, intron 4 of 21)	intron (NM_001361487, intron 4 of 21)	1482.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	2.81138211984619	2.57648891818996	2.92285814226323	2.7250011602229	2.59377394946011	2.6951433551821	-0.553290153542156	0.465937117997649	0.817266460944204
Merged-chr15-91253197-3	chr15	91252697	91253697	+	696.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-61190.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	2.93881837745218	3.31378253170523	3.05262922184716	3.34283513276007	3.40185761081867	3.41882766377831	1.10803489279804	0.0965669769569791	0.4142681490326
Merged-chr5-124352410-3	chr5	124351926	124352926	+	703.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	2202.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	2.60082578072583	2.46607933902749	2.58699973097755	2.51056551135886	2.27121379053973	2.33416114304987	-1.11947023398526	0.182628543795406	1
Merged-chr7-81234369-1	chr7	81233869	81234869	+	653.0	f0_balb.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	20565.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.4910727735371	3.03679649335295	3.27574459940581	3.5893475652781	3.01510507270835	3.34890262252529	0.219869926347738	0.751306214995731	0.937828163299251
Merged-chr2-167885769-4	chr2	167885288	167886288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46539.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.88264249418849	5.5460547202651	5.57106161268004	6.04970685831992	5.88520937890006	5.74674053834728	0.399056469577239	0.218969773336674	0.613128894826908
Merged-chr13-94838293-3	chr13	94837793	94838793	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 3 of 3)	intron (NM_009321, intron 3 of 3)	-37334.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	3.47096435049981	3.33310084281883	3.28316427208069	3.23886394885878	3.51109315235469	3.41233687305111	0.107693355420392	0.860002784172731	0.967441103100897
Merged-chr10-111163902-3	chr10	111163391	111164391	+	923.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-911.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	7.19297807065801	7.3779076299122	7.16573587835925	7.27169532779624	7.37943634791342	6.92275019934312	-0.0533746141110194	0.835846552198568	0.961872042642913
Merged-chr10-117829150-2	chr10	117828650	117829650	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16824.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.69060379457059	6.51330226055166	6.59446614428366	6.82158215803863	7.10499548704752	6.6537474862499	0.444550295948718	0.102830217423458	0.427579667751293
Merged-chr13-93241272-2	chr13	93240780	93241780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48863.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.23853942056879	6.21713285330876	6.21462681942451	6.54043969363791	6.74219052969541	6.52548422158663	0.634297544844671	0.0183745445319628	0.152921494440444
Merged-chr15-99026426-4	chr15	99025943	99026943	+	955.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3448.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.54027571291892	3.07630274314277	3.62061630119153	3.37838554778305	3.2736096702296	3.48550271968602	-0.196325053485741	0.761862324494913	0.941338831902106
Merged-chr16-91459576-2	chr16	91459076	91460076	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5528.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.24752112391974	3.18983734918302	3.06527653632821	3.08898988617403	3.16752637806838	3.31043537160425	0.0621311172856053	0.922932215607392	0.982629432513311
Merged-chr5-124579097-4	chr5	124578619	124579619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181410)	promoter-TSS (NM_181410)	12.0	NM_145371	209354.0	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	6.44011392806511	6.58651113837403	6.71721586363079	6.64949445883883	6.86286239636115	6.30954791016671	0.0956078168418898	0.74224349831551	0.935165347690577
Merged-chr17-5941538-4	chr17	5940997	5941997	+	951.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113353, exon 1 of 27)	exon (NM_001113353, exon 1 of 27)	217.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	4.52156378033669	4.54787106204071	4.12460374601871	4.6696033143007	4.26869723956857	4.56581149057506	0.21335926781499	0.652398489379	0.90297038331694
Merged-chr8-25597580-4	chr8	25597087	25598087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-100.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	8.92624975672378	8.8589109158719	8.72297988687507	8.68915109515544	8.93886793681158	8.61055961416763	-0.112915470837197	0.597102141317018	0.880155708648303
Merged-chr5-88500060-4	chr5	88499564	88500564	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12089.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	2.46558733892271	2.28891601740829	2.38612066682336	2.50270160558223	2.34978496193859	2.71099484118845	0.867416926310861	0.297774963142994	1
Merged-chr17-57017564-4	chr17	57017062	57018062	+	921.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6274.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	3.31664614667242	3.62127492087577	3.8400696071083	3.62727163343103	3.66875110227384	4.04269656850538	0.607559783314755	0.310400662901436	0.705829393476587
Merged-chr17-67352212-2	chr17	67351712	67352712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2247.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.10955463407001	8.41735048868536	7.72320802236814	8.24276463827278	8.53600545108263	7.83444433882246	0.171191425369475	0.558566628325155	0.864727024268474
Merged-chr2-117123023-5	chr2	117122535	117123535	+	978.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	1964.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.89174283544006	6.85148649455632	6.8319845694066	7.04813949124497	7.09794018408108	7.09655603893332	0.338051039825256	0.155513895455966	0.525210913297313
Merged-chr11-83535908-3	chr11	83535481	83536481	+	928.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5463.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	5.48026268737007	5.09259145010393	5.03235944860034	5.3960008648997	5.21030541608172	4.98453012749954	-0.0237063814756	0.95116657269411	0.988674121870846
Merged-chr3-97297955-4	chr3	97297455	97298455	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70591.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	4.96442330358478	5.13900662277377	5.21094048496314	5.61620590282253	5.12766149344668	5.20947103635145	0.470287125543868	0.214302013045281	0.607446165658035
Merged-chr11-43411610-4	chr11	43411123	43412123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14358.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	4.08506165404312	3.94371920100213	3.81990900489541	4.12979321237368	3.90734893642111	3.72475162499966	-0.0702747997577516	0.894095471698765	0.975337673545585
Merged-chr9-63960568-4	chr9	63960105	63961105	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	61454.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.20805053523051	3.82254741714484	3.68122824837101	3.46088630901397	3.51183990135904	3.80562106130734	-1.10796462244671	0.0579817132047164	0.311100231644186
Merged-chr5-139015198-4	chr5	139014713	139015713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20260.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.86800132043515	6.80995142640512	6.88066523992255	6.94326325960503	6.82255149108573	6.65922888289478	-0.0506831643693179	0.84048382334718	0.962819298477451
Merged-chr11-116433388-2	chr11	116432888	116433888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-706.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	6.8911698187158	6.59359982371888	6.19519313550474	6.84045180454734	7.05622519138986	6.52797046974046	0.363494623255733	0.253390195109885	0.650824765543929
Merged-chr9-113664621-4	chr9	113664137	113665137	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 12 of 17)	intron (NM_001164678, intron 12 of 17)	43622.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	5.06239709012377	5.27215961178347	5.20436771400063	4.96644333816542	5.30150536446766	5.38965424575139	0.0960840172086876	0.795173455116872	0.951004454064308
Merged-chr7-43512162-4	chr7	43511622	43512622	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6184.0	NM_028737	74054.0	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	3.57933621755927	3.54471253272105	3.5765824261326	3.80378486420714	3.68612143116509	3.90183094136574	0.774700031480321	0.154616391309424	0.523896269417052
Merged-chr12-91751507-4	chr12	91751013	91752013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	Lx7|LINE|L1	34923.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	5.34521019338353	5.46266496707764	5.25867035445649	5.1861484142614	5.27763360412591	5.25762202074455	-0.244005656738134	0.478375022054149	0.823771292116755
Merged-chr11-118249916-2	chr11	118249416	118250416	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.91900609436921	5.81338137524988	5.87826483141126	5.86229560497007	5.86138056427269	5.86646182260679	-0.012503839932691	0.966364448791213	0.992302763946523
Merged-chr8-123064220-1	chr8	123063720	123064720	+	672.0	f1_c57bl6.idr	Intergenic	Intergenic	-1288.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	3.72643391313073	3.78201357593493	3.42239564484728	3.47047397329787	3.67099494693926	3.71693405639571	-0.12912653235381	0.823656172418277	0.958451755471188
Merged-chr6-17670396-1	chr6	17669896	17670896	+	545.0	f1_balb.idr	Intergenic	Intergenic	-23598.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	2.88810336772968	2.92681952391327	3.01478010388612	2.77418445588255	2.75864457172879	3.02929277330747	-0.436175791410579	0.536731900278697	0.854204769397124
Merged-chr16-91860667-2	chr16	91860167	91861167	+	858.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 24 of 28)	intron (NM_001110275, intron 24 of 28)	70963.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.9824595582253	6.27639386170066	5.94924901361241	6.0672792834274	5.95760522647414	6.18796243756964	-0.0326288400603236	0.913872662049844	0.980811835491594
Merged-chr13-44418807-4	chr13	44418226	44419226	+	812.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21001.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.42374366783913	5.31050970686636	5.31636464871588	5.67819073204526	5.61910305670298	5.44335952418687	0.453849422474307	0.170604393261863	0.54809460828313
Merged-chr7-30562347-2	chr7	30561847	30562847	+	651.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	837.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	6.43977579735842	6.68988104276517	6.78997117469196	6.72936801166012	6.92048346627542	6.66096430676565	0.220248846700795	0.414393164427917	0.785805817831719
Merged-chr18-3009578-1	chr18	3009078	3010078	+	760.666687	f1_balb.idr	Intergenic	Intergenic	113834.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.41760898606651	4.3002227749762	4.09690386222334	3.27392662206783	3.22543454459175	4.68002780415523	-0.0321136899630621	0.983374390016849	0.996283289789735
Merged-chr10-34148681-2	chr10	34148181	34149181	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-20709.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	3.42593532770405	3.25008339613068	3.71952226814442	3.34265642086764	3.34281880649207	3.69264683080604	-0.03292133029585	0.957936095159825	0.990000537228272
Merged-chr17-56074665-4	chr17	56074167	56075167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024432, intron 2 of 11)	CpG	4666.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	7.61914509358257	7.65787565096093	7.42791539836552	7.6080948459716	7.67686160971862	7.31577680805979	-0.0377413881752156	0.875134892352152	0.970909654971172
Merged-chr1-131691619-4	chr1	131691136	131692136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	2941.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	7.2587123969841	7.12648455540594	7.07504468035117	7.12590350910683	7.38359360093587	7.08014446846712	0.079742853810557	0.746754896528122	0.936308940920199
Merged-chr4-59786868-4	chr4	59786373	59787373	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	5.08135567291707	4.98985709492353	4.96571478820063	4.92239221119935	5.02348563653806	5.13336155351245	0.0197068099003035	0.957475545439136	0.98996830630481
Merged-chr7-129756532-6	chr7	129756040	129757040	+	862.236084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164677.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	3.87451592264147	4.17020080213463	4.50571581526782	3.90729584480375	3.69691491551826	4.45980475188074	-0.409364189958088	0.480097582908041	0.824485257133086
Merged-chr8-26697801-4	chr8	26697296	26698296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126627.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.78059848321854	6.59718637993204	6.75780084368851	7.21118706128984	7.10942846795161	6.92140253108684	0.584160816600369	0.0208607726162242	0.165996131543049
Merged-chr6-122863069-4	chr6	122862569	122863569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6912.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	6.31078085583284	6.22398652717284	6.29596264904559	6.23803349471807	6.11835092189802	6.17276135989924	-0.169220817210638	0.539327531535765	0.855849474290651
Merged-chr5-105496387-4	chr5	105495890	105496890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23081.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.93930485858028	5.29687899704181	4.90736916940692	4.31263491518843	4.12429210309107	4.16762223882539	-2.94407046430282	4.06596945185778e-09	4.05175073233751e-07
Merged-chr9-70943209-2	chr9	70942709	70943709	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	MTEa|LTR|ERVL-MaLR	-8401.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.21772265470189	6.30128669451497	6.49782847839524	5.9445564465687	5.81942347835988	6.01501363694801	-0.708530333030345	0.0150877826924637	0.133286359727627
Merged-chr12-28751801-4	chr12	28751236	28752236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201357)	promoter-TSS (NM_201357)	-92.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	6.69138003248084	7.14911023845846	6.90908231381635	7.4636609100243	7.43391615674867	6.93812947296314	0.564668336260863	0.0476677271763565	0.276602686045566
Merged-chr8-84649901-1	chr8	84649401	84650401	+	868.0	f1_c57bl6.idr	Intergenic	Intergenic	12951.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	1.88941715141309	1.89604494334164	2.15288079838705	1.87778778816441	1.72821575863899	1.8275799952306	-1.51524589399213	0.140836367210602	1
Merged-chr6-108783700-4	chr6	108783184	108784184	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026011, intron 1 of 6)	CpG	625.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	8.12341511289504	8.37066700505979	7.88771950726002	7.94798133623291	8.17576381541997	7.86084350042718	-0.200258848589914	0.412178608153006	0.784340123865907
Merged-chr6-90490150-1	chr6	90489650	90490650	+	582.5	f0_balb.idr	Intergenic	Intergenic	27574.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	4.33594971783384	4.41051688855654	4.11773742085646	4.08348406652915	3.9796251146386	3.93176105433019	-0.850521131126126	0.079088594006572	0.371691823219364
Merged-chr7-81199265-3	chr7	81198749	81199749	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-14555.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	5.69860180982472	5.49200673014925	5.75827348822352	5.38002023320425	5.04584129892579	5.47906868113683	-0.671703718904508	0.0572102299012555	0.308462834699913
Merged-chr3-103803166-3	chr3	103802712	103803712	+	919.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	83.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	6.64218892165553	6.71306497179822	6.99116927398693	6.57650506933791	6.5136431228328	6.80489887687207	-0.241378554321241	0.374783106628893	0.758128885281656
Merged-chr16-92039701-4	chr16	92039188	92040188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18634.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	6.39262616506557	6.63147358918042	6.65224680701407	6.44536983901101	6.62895083955512	6.29464355148812	-0.138814045547813	0.619143730342319	0.889662933916861
Merged-chr9-90236928-3	chr9	90236394	90237394	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	33875.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.9999511247567	8.15979388088133	7.89135067278084	7.52738668657884	7.75453792213124	7.7575968888542	-0.488902180407542	0.0312350849438264	0.213993836071956
Merged-chr10-21946251-1	chr10	21945751	21946751	+	654.0	f1_balb.idr	intron (NM_001161845, intron 2 of 13)	(TTTA)n|Simple_repeat|Simple_repeat	-32421.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.96312210600676	6.96037326493346	7.12698777694784	6.90934148909028	6.97972531424275	6.92288198442558	-0.113480810405776	0.638943487215422	0.897847437626511
Merged-chr11-116111481-2	chr11	116110981	116111981	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	7.23165268204984	7.19215537447545	6.87033369521212	6.76016269004339	7.05291271820443	6.61735766863135	-0.427311050193227	0.120722064085186	0.464746993078566
Merged-chr15-85336558-6	chr15	85336091	85337091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 1 of 11)	CpG	210.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	6.10320909705606	6.13279937142204	5.91819598872743	6.26351539010064	6.15865663832613	6.0749743283519	0.183888660296161	0.523708540853371	0.848390706863314
Merged-chr1-184808366-3	chr1	184807873	184808873	+	951.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290273, intron 1 of 6)	intron (NM_001290273, intron 1 of 6)	2927.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	6.48494110956603	6.21165862213272	6.12848706951381	5.95474373128021	6.07674744127285	5.85438908386905	-0.538492210056043	0.0727081731965648	0.354230439448432
Merged-chr7-105628812-4	chr7	105628304	105629304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	4767.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	3.99999937334146	3.75950446471803	3.94712639273699	3.9685327450607	4.03395216544116	4.11045613257585	0.399560192420676	0.42575185728285	0.793340282957454
Merged-chr7-38029412-3	chr7	38028926	38029926	+	912.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-9874.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	5.09260412827119	5.17167206751088	4.97203337078562	4.57402929593418	4.33730202972572	4.61323513896326	-1.35365607509876	0.000845581307248859	0.015796840910095
Merged-chr16-94604525-2	chr16	94604025	94605025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-6894.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.51914241230838	3.62390764845238	3.68814058544551	3.60721005657182	3.63602785499275	3.24380364379191	-0.332445281623518	0.582735224094509	0.873826743013405
Merged-chr9-63092148-4	chr9	63091695	63092695	+	903.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54785.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	4.92092845974082	5.09056477789356	5.26509627718123	5.2611289862557	5.40159850909838	5.23377316731114	0.442992152625508	0.220294339929227	0.614692694772872
Merged-chr1-16104837-4	chr1	16104337	16105337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	-404.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	6.87596730937824	7.3957574555098	7.11613355353423	7.15576643333485	7.34316274783245	7.42363225024643	0.238632308576241	0.371560878803062	0.75567271046966
Merged-chr17-26122848-2	chr17	26122369	26123369	+	582.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-634.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	2.46316921151255	2.29100208537578	2.54128730438459	2.46537803683598	2.25536286283012	2.42527640124863	-0.319447581479849	0.701757256935118	1
Merged-chr6-54110827-2	chr6	54110326	54111326	+	589.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MIR|SINE|MIR	70894.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.00415228742246	2.83347084958706	3.07217220199889	2.92383290304293	2.8917279994657	3.08685775480886	-0.0207357397055532	0.975899790468054	0.994572735300192
Merged-chr1-153543181-3	chr1	153542679	153543679	+	844.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6535.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.55270979854355	4.454815822034	4.60452545782843	4.31498259008038	3.7964122451156	3.82811999774344	-1.45913090139954	0.00474991559347881	0.0591574579706907
Merged-chr6-125312697-2	chr6	125312197	125313197	+	737.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_010736, intron 4 of 9)	intron (NM_010736, intron 4 of 9)	1188.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	3.75073148366545	3.433030482	4.13734905370285	3.49351495711749	3.65995142173554	3.94689816769933	-0.290944149342274	0.634820546138487	0.896354115104213
Merged-chr9-64806485-4	chr9	64806027	64807027	+	743.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4484.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.0887239702627	4.1610089919442	4.11224787116543	3.84726281493474	3.72278371439663	4.08852765690547	-0.719853641243645	0.155624261410055	0.525449746121077
Merged-chr13-69531605-2	chr13	69531089	69532089	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	2275.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.30057820623267	2.73694655571033	3.05513754279608	3.01812113121368	2.8933729312737	3.55474423207181	0.553844935880692	0.474834629338672	0.821690195527599
Merged-chr1-167342029-4	chr1	167341508	167342508	+	943.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7983.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	2.82136025327067	2.6214144806361	2.787650041454	2.45139140194141	2.62927640416189	2.86001839194182	-0.492224853611638	0.532551457213908	0.851971173271146
Merged-chr9-40731866-1	chr9	40731366	40732366	+	603.5	f0_balb.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	45902.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	6.51720980589509	6.47849836109866	6.11270433663944	4.24361912310866	3.94797864785331	4.45330871918705	-5.39893871912328	2.13838944888851e-23	2.78017358223617e-20
Merged-chr12-34297218-4	chr12	34296733	34297733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 16 of 27)	intron (NM_001271386, intron 16 of 27)	231656.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.51362357927888	4.49462970241151	4.64967293386187	4.40485532971221	4.43035733731042	4.51660671459628	-0.252168368895923	0.552562033976468	0.861794619516091
Merged-chr2-122619705-3	chr2	122619187	122620187	+	904.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8410.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	4.05442504052432	3.80252426299774	3.79751512114449	3.23057732420839	3.3389639221636	3.17386856941892	-2.41866032943652	0.000226371520164508	0.00553509299143355
Merged-chr11-55454258-2	chr11	55453758	55454758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	PB1D10|SINE|Alu	6950.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	6.78795266649974	6.7259467632363	6.51549132481863	6.5440432468731	6.69608808901694	6.44486608698855	-0.182450811312192	0.496096159201122	0.832884389427821
Merged-chr5-104042916-4	chr5	104042460	104043460	+	899.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3904.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	3.27696811233632	3.11434977194473	3.10083899253977	3.18979350989778	3.02665211017501	3.17321000591031	-0.179179496084052	0.781856368286775	0.946306869907575
Merged-chr1-72317103-1	chr1	72316603	72317603	+	553.0	f0_balb.idr	intron (NM_001357519, intron 5 of 20)	intron (NM_001357519, intron 5 of 20)	9682.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	2.91880089292171	2.75145343834986	2.9495086741581	2.76001553850451	2.70025513377325	2.84376896908793	-0.554007629265209	0.440618725466982	0.801886710894642
Merged-chr10-8758649-1	chr10	8758149	8759149	+	627.0	f0_balb.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	127421.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.10104765374846	7.316274231005	7.20733490360942	7.02994329525505	7.16948296504595	6.79913136594602	-0.290764432394404	0.251631517400239	0.649115979262858
Merged-chr3-33800106-4	chr3	33799569	33800569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025978)	promoter-TSS (NM_025978)	-114.0	NM_027619	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	8.30807439674862	8.45962873957976	8.22731003102378	8.27783681534556	8.21123982858023	8.11440573113246	-0.187504050359066	0.374397994841852	0.758058822552447
Merged-chr7-135669420-4	chr7	135668819	135669819	+	876.9270630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 9 of 17)	intron (NM_001316681, intron 9 of 17)	-17005.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	2.74551226295452	2.32072773186303	2.58221638096881	2.35251163228437	2.10422269888321	2.59470915028068	-1.18730804814196	0.220653853809597	1
Merged-chr4-58563704-4	chr4	58563205	58564205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10214.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.00978240509731	3.8311222925083	3.59316107859793	3.64101075345597	3.53314114472112	3.60890149010546	-0.800671615112231	0.153415873426255	0.522338393389739
Merged-chr2-148490768-4	chr2	148490272	148491272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47237.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.96899669275301	7.14258040223479	7.26936228281468	7.05730438903088	7.36282912720494	7.3044793607831	0.183623453098743	0.464092203762166	0.816185490048026
Merged-chr5-124532725-3	chr5	124532212	124533212	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	5.30333022135838	5.33910119471778	5.30575738497798	5.4256273685559	5.49968343032101	5.80308603872531	0.500578803738106	0.142473640854203	0.503801228515429
Merged-chr15-6349427-1	chr15	6348927	6349927	+	547.0	f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-37321.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	2.87091878545991	2.5774224185122	2.94737918852581	2.59761848442068	2.43754514405421	2.66209208111478	-1.35546726856393	0.0911780109100041	0.401840038760573
Merged-chr17-17871139-4	chr17	17870687	17871687	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	12752.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	7.23849333514591	7.15710398248087	7.67074594995053	7.37920164970683	7.7853529421554	7.68432068285642	0.383343577059671	0.154585421792394	0.523896269417052
Merged-chr3-31133855-4	chr3	31133357	31134357	+	951.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16063.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	5.64843311466297	5.6369422665336	6.08834955441806	5.97731064816565	5.73255983682606	6.26428639001414	0.356763779540099	0.298856568299312	0.695568161311549
Merged-chr6-53496427-3	chr6	53495908	53496908	+	877.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-76966.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	2.32196826355461	2.249027580986	2.69117216957863	2.27973929267136	2.06479291512983	2.58872482435713	-0.637670815771437	0.500213877166922	1
Merged-chr6-34780677-7	chr6	34780112	34781112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289657, exon 1 of 19)	5' UTR (NM_001289657, exon 1 of 19)	180.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	7.64476438161731	7.63206850688994	7.31351749341741	7.63796777982134	7.41314867423964	7.39347772494752	-0.0863649852069252	0.721686900107026	0.928585725998447
Merged-chr14-55660363-4	chr14	55659864	55660864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028316, exon 1 of 5)	non-coding (NR_028316, exon 1 of 5)	144.0	NM_023397	67881.0	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	5.90134341540341	6.0593278308413	5.85963419521196	5.6193166504696	5.62463295090275	5.60393277039685	-0.597846961610611	0.0514525861880571	0.289206589557218
Merged-chr7-45588924-2	chr7	45588424	45589424	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243052, intron 10 of 10)	intron (NM_001243052, intron 10 of 10)	-13748.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	4.04969499512155	3.5022352045509	3.86253555710549	3.6585416083302	3.7536330144086	3.88274545292086	-0.192381220105167	0.735175566625469	0.932617455907478
Merged-chr8-69715941-1	chr8	69715441	69716441	+	560.0	f1_balb.idr	intron (NM_001039967, intron 1 of 5)	intron (NM_001039967, intron 1 of 5)	961.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	6.56241663164987	7.00620346214282	6.46071069431139	7.08316071419012	7.08746118651294	6.65008575345162	0.393152903686263	0.190936662143238	0.577487433640144
Merged-chr9-25591524-2	chr9	25591024	25592024	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	109927.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.16436035301879	3.19740571856632	2.91510926975083	2.9001298987421	2.74768094838836	3.05012843168906	-0.971201516180376	0.173907097474149	0.553140727918843
Merged-chr11-66985112-2	chr11	66984612	66985612	+	756.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27218.0	NR_130646	71576.0	Mm.340077	NR_130315	ENSMUSG00000085683	Tmem238l	9130409J20Rik	transmembrane protein 238 like	ncRNA	2.51276030402629	2.53438776063657	2.68684731516816	2.63791087892892	2.30672246455304	2.37429353889312	-0.781816716356177	0.349008975551655	1
Merged-chr6-83654861-3	chr6	83654406	83655406	+	922.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 2 of 6)	intron (NM_016751, intron 2 of 6)	1210.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.04712958107701	7.53009293700409	7.49543295806602	7.42792775914568	7.50474908682879	7.01143409627425	-0.0494306906796677	0.859799319628197	0.967435965660262
Merged-chr8-124837119-3	chr8	124836669	124837669	+	769.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25860.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	4.29994512452063	4.88171410782773	4.94397419877641	3.7918475870629	3.54309662487726	4.17479405657086	-2.52080464831285	1.08261232618506e-05	0.000428961935415268
Merged-chr19-40708336-4	chr19	40707841	40708841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	48571.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.93072896484613	6.73956894098069	6.91755850663651	6.49041572508824	6.96637711081895	6.65795872466949	-0.206516957470739	0.456315735362917	0.811531402057786
Merged-chr4-133338770-1	chr4	133338270	133339270	+	746.5	f0_balb.idr	intron (NM_199306, intron 1 of 15)	intron (NM_199306, intron 1 of 15)	545.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	6.45838054791488	6.64787485434267	6.3162895314066	6.12864264748857	5.8212917225542	5.73982807673115	-0.969786427286912	0.00140725022251283	0.0235839831852664
Merged-chr18-75019205-1	chr18	75018705	75019705	+	1000.0	f1_c57bl6.idr	intron (NM_027727, intron 1 of 16)	CpG	433.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	6.61992918381274	6.88860773435279	6.82968330189809	6.66081471081696	6.32282370713916	6.42642619997454	-0.488648834890613	0.0753823287996619	0.36159125428477
Merged-chr6-108570539-4	chr6	108570026	108571026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52641.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.71981734989027	6.9310500250085	6.69980682287568	6.25708634811658	6.27481441587869	5.96039788362493	-0.981438251618075	0.000496474661496593	0.0104494334049023
Merged-chr1-16104421-2	chr1	16103918	16104918	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	15.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	6.51588932425041	7.01496486333943	6.78072079743376	6.89103140077075	7.07773171467609	6.96944064046501	0.299324498645177	0.273864827243035	0.671305269086912
Merged-chr18-84851280-4	chr18	84850775	84851775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025797)	promoter-TSS (NM_025797)	-63.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	7.10291915769358	7.01740881433085	7.02140736351686	7.00780032349945	7.12460211227568	7.10523910564775	0.0482989391317279	0.838294938133828	0.962493207106836
Merged-chr15-90669677-3	chr15	90669162	90670162	+	922.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	9726.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.8322291510654	4.69973817384004	4.65102716329001	4.37304989752069	4.12329204875845	4.33309157618055	-1.16613453634487	0.00774657455343188	0.0840935388704449
Merged-chr19-55830633-3	chr19	55830090	55831090	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	MTD|LTR|ERVL-MaLR	-64731.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.13037291128474	4.08664931668306	3.92050385230905	3.9567390590858	3.79101240855193	4.13404809158612	-0.287197927672108	0.571320552081169	0.869428183241799
Merged-chr13-33068396-3	chr13	33067951	33068951	+	803.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-15652.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.25320461323293	3.08098565728592	3.2244035608696	3.45826154178988	3.38423383553994	3.41049752324298	0.934347076784753	0.128781369194357	0.479799601167289
Merged-chr13-103922577-2	chr13	103922077	103923077	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1991.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	2.72976995134804	2.71672039962187	2.82170068218162	2.69307459158641	2.69016261341748	2.77347982979023	-0.197652150199094	0.784869562489914	0.947770123968912
Merged-chr11-119729500-3	chr11	119728989	119729989	+	648.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 4 of 33)	intron (NM_028898, intron 4 of 33)	104876.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	4.309637896859	4.47616354384158	4.3080214411187	3.91612201274885	4.18983522158997	4.14638851906545	-0.761449423533225	0.110020133256011	0.443362807437337
Merged-chr1-165642443-4	chr1	165641963	165642963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7922.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	8.63415870882439	8.66937606293837	8.46987382076078	8.49423660999601	8.76638131001478	8.28524320372012	-0.0812968257902189	0.723622423635216	0.929080851011554
Merged-chr10-21937500-4	chr10	21937018	21938018	+	764.612488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-41154.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.74439314532961	4.53549922302123	4.41232035594178	5.23294257776067	5.35022702463707	4.62773269639458	1.19880897606098	0.00744013192339401	0.081661851613477
Merged-chr13-59870321-4	chr13	59869803	59870803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-47156.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	6.04683390681278	5.96850458823166	6.17965028640518	6.18928990457465	6.37742999296986	6.64538969500846	0.583242691557574	0.0485725514353773	0.279697222133901
Merged-chr7-19921095-4	chr7	19920592	19921592	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027514)	promoter-TSS (NM_027514)	51.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	6.55821411953281	6.63209397302794	6.7839719158787	6.88468970802853	6.72982555029958	6.54909754035749	0.123640561370736	0.64110561933094	0.898770428668406
Merged-chr6-73711435-2	chr6	73710935	73711935	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-240414.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	3.58968968525506	3.68419174610374	3.60665475670401	3.58878215225522	3.42623713239784	3.56982093185857	-0.368474330476976	0.511284203608978	0.841331921585713
Merged-chr7-38019520-4	chr7	38019018	38020018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011274)	promoter-TSS (NM_011274)	34.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	7.84117422524007	8.41223692977436	7.97883387446898	7.91362584160945	7.58114084070004	7.76083388252678	-0.496633843464578	0.0568465501983813	0.307396417762347
Merged-chr14-61861591-4	chr14	61861099	61862099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179226.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.74566470608785	5.72920451234621	5.71544020558202	5.43107848539422	5.24844325607351	5.62027210885108	-0.570948177539234	0.0831497319636004	0.381505377849687
Merged-chr4-154940769-2	chr4	154940271	154941271	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-12694.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	4.40029723049436	4.57377088806069	4.66905078628166	3.96412300435476	4.03158721146874	4.2016819615747	-1.31568058750314	0.00498438922730728	0.0610901544889946
Merged-chr18-60788625-2	chr18	60788135	60789135	+	829.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	14039.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	3.26899665544584	3.32276303384795	3.63346308377179	3.78963076644016	3.8535282557373	3.80534503772881	1.47030150522589	0.0114194012696177	0.110424201741438
Merged-chr17-27612957-1	chr17	27612457	27613457	+	631.5	f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10007.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	3.28254001194119	3.24955151168519	3.27822659270759	3.12453192799606	3.17885379585675	3.2361983439273	-0.380301851602245	0.540531469575101	0.85637977208932
Merged-chr11-23666371-1	chr11	23665871	23666871	+	1000.0	f0_c57.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	395.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	8.27345322697324	8.36377761477736	7.95824520986278	8.21682772430356	8.32227586570811	7.97476179510572	-0.0437549678593014	0.853562586691187	0.965729404686806
Merged-chr11-96965327-2	chr11	96964827	96965827	+	802.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_003293)	TTS (NR_003293)	12361.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	4.2117257458155	4.06426662601222	4.56415429518162	4.01227580459135	4.02939882086082	4.31660901554953	-0.462533878953647	0.354755745412417	0.741857654291942
Merged-chr10-4080040-4	chr10	4079530	4080530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106955.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	7.07906049891164	7.37144153749444	7.22865908267588	6.50063965752786	6.64830121645201	6.65568732448163	-0.969308784519654	0.00013879227820131	0.00373379498369692
Merged-chr7-100509494-2	chr7	100508994	100509994	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 3 of 7)	B1_Mus1|SINE|Alu	5321.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	6.41088789764681	5.88284126241272	5.92123084220515	6.83289612021458	7.08900544007926	6.69864432252593	1.2624910533704	5.41878130478594e-05	0.00168871144123082
Merged-chr14-103471413-2	chr14	103470913	103471913	+	764.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41928.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	3.09119949930897	3.26112762274821	2.85740742235463	3.01545470143841	3.09761492211045	3.17889906121835	0.0449855918645748	0.948274258094515	0.988083630162243
Merged-chr11-103031208-2	chr11	103030708	103031708	+	798.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	B1_Mur4|SINE|Alu	2665.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	5.85056950331958	5.67683033115737	5.68273566279821	5.88246408023379	5.93219085651322	5.63342888343899	0.163458076001975	0.603574903786685	0.882688060083171
Merged-chr11-114876766-2	chr11	114876266	114877266	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13275.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	4.377081432636	4.27140972231127	4.45214467389137	4.45620190019073	4.41124286506354	4.67588832342622	0.374992116699685	0.392624037667166	0.771214636708298
Merged-chr5-88769139-2	chr5	88768639	88769639	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 1 of 6)	B1F|SINE|Alu	4126.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	5.37827993451943	5.30906334513121	5.62745229851942	5.79358841949626	5.87069819661085	5.68970002633037	0.670372043168199	0.0393091807450439	0.246105546992141
Merged-chr11-68446762-2	chr11	68446262	68447262	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	L1M5|LINE|L1	14637.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.00673907885354	4.05617917515376	3.82414979568786	4.15618762712287	3.95844654146538	4.0970709689244	0.282898285483703	0.570829020703127	0.869266484779943
Merged-chr4-142091843-2	chr4	142091343	142092343	+	554.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7539.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	6.51176156994252	6.13921036354876	6.6558483929459	6.55712002126354	6.56772993274348	5.98425618889915	-0.0631550733687341	0.846632239534594	0.964082230147561
Merged-chr7-67464799-4	chr7	67464298	67465298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91940.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.22642622015878	6.59590543276368	6.5579463056178	6.53008413606617	6.63572191898016	6.77443183934867	0.285830032063516	0.305801990180235	0.701883343337569
Merged-chr8-75095017-6	chr8	75094641	75095641	+	809.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	intron (NM_010442, intron 1 of 4)	1523.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.64016711534399	5.80244096361997	5.65624819892981	5.64157231056622	5.72410792900269	5.54943095338789	-0.106542328022179	0.73617254484324	0.933046642264646
Merged-chr2-169777416-1	chr2	169776916	169777916	+	1000.0	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	143770.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	2.75533130037122	2.68393624897508	2.95802896878323	3.63774746307871	3.44815602124193	3.34196771923278	3.65902543998643	1.25782548902784e-05	0.000486796015307108
Merged-chr13-49217249-2	chr13	49216749	49217749	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1223.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	4.85322924401971	4.9299139909733	4.77412232771725	4.78864401490308	4.6787285601845	4.91429589198357	-0.159090013313245	0.685029276227887	0.916088073421675
Merged-chr7-45592002-4	chr7	45591494	45592494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-16818.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	7.65894190107263	7.50901293810959	6.99729788386111	7.6489247001925	8.0226709549467	7.40504466947753	0.432774780148704	0.145297097329085	0.508338649447163
Merged-chr11-98022719-4	chr11	98022227	98023227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-100.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	6.68498422852789	6.59421758056269	6.81605910563414	7.07515726610971	7.0657086995014	6.85973099390043	0.487129966732398	0.053622021948862	0.296878115797519
Merged-chr13-55212236-4	chr13	55211766	55212766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	2484.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	7.43118390930009	7.42756632393227	7.4281100391891	7.65012373175359	7.20589297734333	7.61216697974596	0.102346108079435	0.680468343364421	0.914249889629857
Merged-chr8-82755146-3	chr8	82754613	82755613	+	870.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	19013.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	4.54488921869807	4.92326738912646	4.09555785348451	4.72264537879096	5.02932649962567	4.6617131865715	0.56043047517837	0.2677311723029	0.664975925109882
Merged-chr2-90505970-3	chr2	90505533	90506533	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-26859.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.36948608749087	6.22091159500911	6.32510885338085	6.52208846881396	6.06703327412208	6.52900450670591	0.123490136521115	0.678832336469922	0.913553914280182
Merged-chr4-9133847-4	chr4	9133347	9134347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-135446.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.73298065408961	2.62801263261747	2.50218756064565	2.76329132942536	2.57878339432834	2.77094628634397	0.413520740645946	0.592092881644712	1
Merged-chr2-130954555-4	chr2	130954064	130955064	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009730, intron 6 of 28)	intron (NM_009730, intron 6 of 28)	48069.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	4.57041989348023	4.24571462321115	3.81894112161292	4.22731836813087	4.20589840406575	3.95053288786066	-0.322924366310933	0.553552483360112	0.862320646935789
Merged-chr8-105393403-4	chr8	105392906	105393906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301173, intron 5 of 15)	intron (NM_001301173, intron 5 of 15)	18025.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	5.83699796735428	5.83289259095841	5.40435216517343	6.0127612610764	5.56278547679457	5.53259210013364	0.0127552807615694	0.97141285999019	0.993770547532012
Merged-chr16-91868688-2	chr16	91868188	91869188	+	804.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62942.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.9553876650875	6.8682063678506	6.868556225091	7.03049157363527	7.0374105731888	7.16406825083954	0.268515229960343	0.263878586021682	0.661864470315546
Merged-chr1-132340511-2	chr1	132340011	132341011	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	24386.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	3.83605711600102	3.64176414779626	4.0236758504707	3.75069842872774	3.41058808686914	3.86095951517629	-0.516907028766553	0.369435145856772	0.754132761308333
Merged-chr4-47314885-2	chr4	47314385	47315385	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38337.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.6533369935968	6.85842790662551	6.82999910936006	6.48054012462464	6.57363159503197	6.57407620289494	-0.377590032375513	0.143362538420214	0.505400107113741
Merged-chr10-117836562-4	chr10	117836054	117837054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B3A|SINE|B2	9420.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.64562155369051	5.68157193509322	5.8047080412351	5.68491838732369	5.89929680634086	5.86589064332885	0.208780975975092	0.500340613234913	0.834978949366358
Merged-chr7-43658152-2	chr7	43657652	43658652	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031181, intron 3 of 6)	ID_B1|SINE|B4	2009.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	4.7752498635457	5.04170090594425	5.31286732497412	5.52741674508412	5.29088921803449	5.74517288929781	0.949646616572727	0.0139897785526264	0.126688289976622
Merged-chr5-64959232-4	chr5	64958693	64959693	+	956.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	903.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	7.84532657158036	8.0085561468181	7.29170634429627	7.6544807187329	8.14314080788417	7.58384134005763	0.0969361785373908	0.744642961375077	0.936032341688524
Merged-chr10-82899116-3	chr10	82898622	82899622	+	980.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	32496.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.38242609421838	4.13760881275042	4.28996785500878	5.31267392199746	5.48531956547821	5.27023042040511	2.52970826288402	1.62670209945469e-09	1.7264620955539e-07
Merged-chr12-16867419-1	chr12	16866919	16867919	+	970.0	f1_c57bl6.idr	Intergenic	Intergenic	-27559.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	3.43480162409598	2.92614925428414	3.74965974012015	2.95076040022042	2.93923617376744	3.2197175773805	-1.52969971086246	0.0395931819932807	0.247295412648018
Merged-chr7-122289061-4	chr7	122288550	122289550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008855)	promoter-TSS (NM_008855)	-75.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.98779725574664	5.40329975206301	5.3642519980442	5.39276053849532	5.00100168251255	5.12230489933459	-0.866283750373403	0.0274124500697327	0.197367795619689
Merged-chr10-57726771-2	chr10	57726271	57727271	+	917.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	RMER1A|Other|Other	-58152.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.90771937925394	4.52335712903557	5.01230127826577	4.83652389135267	5.11569789859367	4.78579319394267	0.237912360673327	0.571475150724274	0.869547320544841
Merged-chr15-6523732-2	chr15	6523232	6524232	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56115.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.50242514304063	6.24857379364919	6.08790429935967	6.49592993918927	6.43435325560187	6.84086620778694	0.476956443490018	0.110663591029418	0.444566128377285
Merged-chr11-58867260-4	chr11	58866755	58867755	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172403)	promoter-TSS (NM_172403)	15.0	NM_172403	69944.0	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	4.28742140423977	4.24351455624424	4.17054625042243	4.47011299116867	4.32366650349763	4.23985435692646	0.300198087183854	0.50853869140853	0.839818423824339
Merged-chr6-116074065-3	chr6	116073575	116074575	+	817.349976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-79070.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.95004853595507	5.62310146068243	5.78937466915942	5.38640771516318	5.00723831996468	5.18274036771358	-1.14895906171712	0.00108628914080875	0.0192110407711827
Merged-chr11-75455472-3	chr11	75454947	75455947	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	-730.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	6.75685044137906	6.59957518638161	6.75858098901473	6.60659653753109	6.6330132434931	6.84607744007312	-0.0178617602969169	0.945121729320542	0.987875414328125
Merged-chr4-145235386-2	chr4	145234886	145235886	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	ORR1D1|LTR|ERVL-MaLR	11484.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.14507253740282	5.00819231347822	5.41733395124463	5.13926154297603	5.02928583073512	5.50623347940655	0.0765302034990351	0.842768734737912	0.963161613177542
Merged-chr12-98260182-4	chr12	98259744	98260744	+	931.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-785.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	6.47662112181588	6.93331520370762	6.44524892199597	6.60735983260473	6.98529166334875	6.59679465012762	0.163852161076252	0.587048805239668	0.875769926947203
Merged-chr13-47242609-4	chr13	47242121	47243121	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 6 of 7)	intron (NM_146042, intron 6 of 7)	48618.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.04093818289597	4.35656645581179	4.32948821096152	3.92821378857591	3.63527750769185	4.13704675543213	-1.00920778482282	0.0564390577912211	0.306249471464912
Merged-chr17-71285433-2	chr17	71284932	71285932	+	887.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	25579.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	5.99800240639749	5.8119019518528	5.41354110761419	5.09862279290229	5.23130480664877	4.9354679654149	-1.29146988972964	0.000554569549095882	0.0113965480467202
Merged-chr10-21604667-1	chr10	21604167	21605167	+	619.0	f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	11522.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	5.47232369934185	5.11851143629413	5.13408272310659	5.34936237613552	5.14789748287788	5.29798065738915	0.00966314294309708	0.978856669586578	0.995160277495735
Merged-chr1-37427411-4	chr1	37426906	37427906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198006, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	2697.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	6.18749114377014	6.37882022908643	6.26085558761728	6.49387787134517	6.77706395448756	6.14701747489877	0.381780117137608	0.210817577584177	0.603098348627511
Merged-chr5-96921723-4	chr5	96921227	96922227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131152, intron 1 of 2)	intron (NR_131152, intron 1 of 2)	455.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	7.68366775960137	7.80465895214943	7.59184510896568	7.67824347847543	8.00980263992809	7.67693602232615	0.151537139519834	0.521793365853877	0.847234562423788
Merged-chr8-119440106-2	chr8	119439606	119440606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	2944.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	5.48212981098147	5.23932371098974	5.50499471858616	5.41556003649165	5.23771578822256	5.67244364560758	0.0620557400419961	0.861281545778941	0.967789299492425
Merged-chr13-56610434-2	chr13	56609934	56610934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	848.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.08035890553321	4.87392846577268	4.99643242700511	5.75259187315553	5.81046797439413	5.13946218132092	1.24687692242447	0.00119708174634423	0.0207168839329888
Merged-chr1-40083339-2	chr1	40082839	40083839	+	652.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_037980, intron 3 of 3)	intron (NR_037980, intron 3 of 3)	-1375.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	2.51359581909711	2.63367002602795	2.44361760279094	2.57676950292027	2.57872266047455	2.83128341974619	0.715630342643996	0.365929153402391	1
Merged-chr8-119813886-4	chr8	119813378	119814378	+	734.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	26701.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.65002051762497	6.55059285508774	6.54131843497113	6.66013170649049	6.74207672323769	6.4354258919539	0.0724454175351898	0.784812225018285	0.947770123968912
Merged-chr13-30766623-3	chr13	30766134	30767134	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	17401.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.30400017844963	5.27222837004775	5.54853857799708	5.1915774290841	5.28272283710999	5.53013551836299	-0.073669283067332	0.834707286338271	0.96138272464184
Merged-chr2-118541053-4	chr2	118540553	118541553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	3534.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	7.27004718173228	7.05280928065722	6.78835031148474	7.83687157864426	7.94451786994648	7.33563858719937	0.998325135425614	0.000433518493555596	0.00939135819103724
Merged-chr16-32837011-1	chr16	32836511	32837511	+	552.0	f0_balb.idr	intron (NM_172615, intron 8 of 18)	intron (NM_172615, intron 8 of 18)	-26565.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	3.44625420520771	3.534823212932	3.5903048414292	3.40785885162469	3.45408052643302	3.5017091478587	-0.254529188912575	0.656903380377947	0.904720876497753
Merged-chr17-56264224-4	chr17	56263737	56264737	+	929.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010192)	TTS (NM_010192)	7444.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	4.09259694857525	3.87391208540349	3.92004249652088	4.13886444567979	3.93731977834831	4.51197263899289	0.684665170289922	0.188919281023844	0.574413224806041
Merged-chr15-78330171-3	chr15	78329675	78330675	+	774.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	4185.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.68521431842868	3.96323038866454	4.06287096900022	4.00974650217191	3.74411334132718	4.1304300596644	0.166172576726539	0.755961707991874	0.939495792549816
Merged-chr2-128780813-2	chr2	128780313	128781313	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-37490.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.70375501376271	3.75907732385388	4.12721500860923	3.73561819805196	3.60595321372588	3.78046241032696	-0.528330613062401	0.33671514431403	0.726761789008893
Merged-chr11-121803071-3	chr11	121802572	121803572	+	796.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27146.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	6.73474956415541	6.85277808425913	6.95929705098643	6.92403613524844	6.9646100675804	6.93516825488577	0.147208792406301	0.549328748764411	0.860273914502926
Merged-chr9-116098740-2	chr9	116098260	116099260	+	765.25	f0_balb.idr|f0_c57.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76603.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.52015818206015	5.05437438740141	5.39176728403468	4.59794192674048	4.75440162797965	4.74460844921333	-1.36338665082042	0.000648771638721146	0.0129115021561131
Merged-chr4-136898027-5	chr4	136897623	136898623	+	970.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007572, intron 1 of 2)	(CCCTAA)n|Simple_repeat|Simple_repeat	721.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	8.10907590590722	8.06919268426884	8.0755492931849	8.50981845175873	8.49049039745591	8.11714516495322	0.429332499370031	0.0546268466514554	0.300164475742871
Merged-chr5-143820892-3	chr5	143820393	143821393	+	591.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50969.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	3.99254985662142	3.96054684735074	4.06013228090718	4.11243646283909	3.80666615211273	4.0340039999387	-0.0527668140233289	0.916235960652815	0.981243905880233
Merged-chr17-8224868-2	chr17	8224368	8225368	+	932.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11175.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	3.87462168847307	3.7987404961732	4.26469798179622	3.63360761425675	3.49793619747733	3.79964599852275	-1.12106208274833	0.0463257800524035	0.272338244072375
Merged-chr6-127467973-3	chr6	127467495	127468495	+	640.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346512, intron 1 of 5)	intron (NM_001346512, intron 1 of 5)	14368.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	2.84374284692972	2.62392958050676	2.98361608055416	3.17802793647287	2.83360966496268	3.11455307799536	1.08890051026484	0.141358763091768	0.502119843364898
Merged-chr14-61678300-4	chr14	61677796	61678796	+	852.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	4077.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.68946798458993	6.66552367700222	6.00573200703113	6.14292841158014	6.58572651301714	6.06799551589828	-0.329879534090087	0.336890152268937	0.726861060604748
Merged-chr11-118312477-4	chr11	118312000	118313000	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 3 of 4)	intron (NM_011594, intron 3 of 4)	-22256.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	5.03035755379506	5.08432441338515	5.01220904376356	5.05301684084018	4.83856541795639	4.50355187782294	-0.47156669158418	0.247220363166676	0.644145276280485
Merged-chr2-31084642-4	chr2	31084142	31085142	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	11858.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.43907260557572	6.18399847051273	6.25958296524192	6.12907703109412	6.51404997981735	6.41603066434301	0.109866416388631	0.706273193962018	0.922946364495901
Merged-chr4-132946153-2	chr4	132945649	132946649	+	915.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-23598.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	8.03461917319374	8.11800669175726	7.76270216626575	7.92756883806467	8.10573256534544	7.63196997215676	-0.105933509170204	0.669064088835949	0.909505510225091
Merged-chr1-138130347-2	chr1	138129847	138130847	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	44779.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.12546823384037	4.14796450649207	4.2014698938469	4.07582849583021	3.97191398082017	4.268706315141	-0.157589680143191	0.741933274551363	0.935046573868423
Merged-chr9-21526166-4	chr9	21525683	21526683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	6.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	7.69966367325864	7.4932768682829	7.79996624096472	7.75312993409209	7.94855842474909	7.8564047531809	0.275470092408807	0.227649230407594	0.622808210644087
Merged-chr7-44552240-2	chr7	44551740	44552740	+	927.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285517, exon 5 of 10)	exon (NM_001285517, exon 5 of 10)	1725.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	2.43947239451064	2.33293042704532	2.66998875084579	2.27407039136733	2.29272732599177	2.50207918182511	-0.802892579501002	0.34325912922762	1
Merged-chr16-94517841-4	chr16	94517305	94518305	+	944.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	Lx5c|LINE|L1	8824.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	5.12611228110263	4.91060253225535	4.85860981045335	4.82263103305188	4.71521744900643	4.59800610658867	-0.574986783224905	0.148409819609895	0.513953991981574
Merged-chr1-134096645-2	chr1	134096145	134097145	+	854.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14597.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	3.14083131586764	2.90439160953	3.34670177580441	3.24091464947175	2.94117800757343	3.08213512409509	-0.196632670419392	0.775677076852674	0.944750767901947
Merged-chr5-72243961-2	chr5	72243461	72244461	+	815.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 5 of 22)	intron (NR_003966, intron 5 of 22)	40618.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.75039548594598	4.82066593574139	5.13612789769777	4.78411005164342	5.11467888398406	4.56469515454317	-0.106213969669667	0.805336870821128	0.953840812813326
Merged-chr13-107118339-4	chr13	107117848	107118848	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95778.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	3.05061617608743	2.99854608000428	2.87714928133264	3.01599747266027	2.93730277249085	3.29848899283991	0.476217272600356	0.490341124301023	0.830042606694236
Merged-chr13-74018014-3	chr13	74017521	74018521	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	8602.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	3.710740428312	3.82862055941837	4.15171534207209	3.67246286987008	3.8846853194484	4.33890946279102	0.252383218004322	0.657444858043185	0.904798742244684
Merged-chr2-52999650-4	chr2	52999128	53000128	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	141760.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.48755287486059	4.58301336644742	4.82034736811527	4.49194949887259	4.2929274910764	4.91799074940781	-0.120210822705642	0.794363310841045	0.950685820678043
Merged-chr15-37972845-4	chr15	37972346	37973346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-11791.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	7.90244877566456	7.93661028869864	7.53937021648215	7.79911264128927	8.27632044607354	7.29871919599024	0.0802211716339949	0.795907751031655	0.951374777848283
Merged-chr11-34063848-4	chr11	34063361	34064361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	16933.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.94242984610415	6.89947522251542	6.87228660150966	6.80306804455288	6.95256394579917	6.82713236092206	-0.0610441661837073	0.803086060887989	0.953422605427866
Merged-chr2-34906537-2	chr2	34906037	34907037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028716, exon 5 of 15)	exon (NM_028716, exon 5 of 15)	7439.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	5.06779527768574	4.93144539042283	5.45552628062573	4.63914768613197	5.13302320336996	5.26633485882476	-0.257734824512331	0.544530700591816	0.857798684260618
Merged-chr2-52897763-2	chr2	52897263	52898263	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39895.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.23614743881262	6.22170662088759	6.7620211516515	6.24873476374536	6.33539161151677	6.49563881688109	-0.0975465081346153	0.750391421940811	0.937550343416037
Merged-chr5-33782351-1	chr5	33781851	33782851	+	1000.0	f0_balb.idr	intron (NM_019694, intron 1 of 13)	CpG	353.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	6.20322520975564	5.85509634909248	6.37598700710341	6.4448866226683	5.86437017572065	5.95830879578291	-0.0662413324790737	0.846234232242252	0.963978208772454
Merged-chr5-110107750-4	chr5	110107237	110108237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145147, intron 1 of 9)	CpG-11316	460.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	7.62081636178051	7.69104978081849	7.68058656193211	7.81130243145635	7.85503243349532	7.55693563921748	0.130947964794349	0.561594498719989	0.865450884348128
Merged-chr14-73145120-2	chr14	73144620	73145620	+	849.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_033185, intron 1 of 15)	intron (NR_033185, intron 1 of 15)	2335.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.56198401642218	3.67707292804565	3.46780939322034	3.4024899839356	3.42253362271713	3.69588592242053	-0.254676091265996	0.661917867735107	0.906495637422278
Merged-chr1-91041795-4	chr1	91041296	91042296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-11648.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.50026057656649	6.53536805131572	6.54022960855495	6.32144076299944	6.40150624468048	6.51313269484663	-0.185526926750831	0.481599574482237	0.825159653544888
Merged-chr12-102444336-2	chr12	102443836	102444836	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4523.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.20082180606473	7.04525191036986	7.09448405281624	7.5102735601075	7.73701748902132	7.41071389259161	0.674648948089863	0.00507611255824637	0.061795636246754
Merged-chr1-134961838-1	chr1	134961338	134962338	+	606.0	f0_balb.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-727.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	3.58144483631298	3.51392977518946	3.56732006722331	3.3864888623819	3.34623291984178	3.36341848928208	-0.718992677054636	0.215925897236127	0.609299440900042
Merged-chr1-161076447-4	chr1	161075893	161076893	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131030, intron 2 of 4)	B1F2|SINE|Alu	5626.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	6.83541097687523	7.05061610814711	6.75174250009639	7.48261180088297	7.65102680287177	7.05259201638332	0.806952531747782	0.00349124173607146	0.0470846943636612
Merged-chr10-81300331-3	chr10	81299839	81300839	+	797.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	PB1D7|SINE|Alu	7376.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	5.26131459772662	5.00175407566214	5.3145179451449	4.8453334829952	4.91354843112367	5.09665184555601	-0.517156113635772	0.170799619559445	0.54851767134078
Merged-chr13-37890350-4	chr13	37889848	37890848	+	962.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	1477.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.94417243282835	5.06945607008873	4.85873566463753	5.07715501582697	4.73564245630936	5.10204490055203	0.0127546425506043	0.974086640664589	0.99422005073929
Merged-chr11-120634021-3	chr11	120633492	120634492	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-445.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	7.07602602869025	6.70820603826361	6.39402311253797	6.89445591563021	6.71250510652583	6.37204155480887	-0.128660294195033	0.683447196313737	0.915437828512898
Merged-chr2-116942545-4	chr2	116942031	116943031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42379.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.49428115317012	7.26488815664103	7.20712944170307	6.99365463447711	7.1582338382861	6.89075229971144	-0.461367298130002	0.0653557847080048	0.333340942379776
Merged-chr1-149957689-4	chr1	149957199	149958199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3591.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.09254375068277	6.96784919445415	7.13119541494869	6.8289668210249	6.94057149655197	6.77572006699344	-0.31622510125055	0.197591068393996	0.585720984790593
Merged-chr8-103941096-4	chr8	103940602	103941602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160523.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	5.4299501019026	5.64941898099816	5.75034228475619	5.31181119057868	5.63835019701199	5.26823067370267	-0.341496218542976	0.332089513361632	0.72335990848255
Merged-chr12-40557899-4	chr12	40557395	40558395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	111842.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.25287131825468	6.27818877704935	5.959459471582	6.28471316246604	6.49484240007586	6.59981072371493	0.463151971562711	0.110918113777735	0.444841551070303
Merged-chr11-5503552-2	chr11	5503073	5504073	+	878.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17068.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	4.53279373051346	4.60682527031395	4.8985274225636	4.77336225155896	4.94740992174929	5.30443803994528	0.761213552385718	0.0706843910997206	0.348554392238091
Merged-chr19-8735832-4	chr19	8735301	8736301	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134139)	promoter-TSS (NM_134139)	-38.0	NM_134139	107071.0	Mm.29627	NM_134139	ENSMUSG00000042729	Wdr74	5730436H21Rik|AA407588	WD repeat domain 74	protein-coding	6.55128006238915	6.51984946506582	6.72828630561828	6.42330532568094	6.54647200699546	6.2960419164606	-0.260206019031641	0.336295047412647	0.726311051846196
Merged-chr3-79145815-4	chr3	79145322	79146322	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310536)	promoter-TSS (NM_001310536)	53.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.33980574193613	3.39202136167686	3.04712205767969	3.13150615499688	3.18485866508664	3.29868585955216	-0.296163686269412	0.649012107622737	0.902056560253111
Merged-chr15-64086601-2	chr15	64086101	64087101	+	580.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001276462)	TTS (NM_001276462)	-26153.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.23458476192594	6.30666082424374	6.14702342635839	5.76695384986313	6.10182412978132	6.1219754059814	-0.387939418757991	0.192397003877863	0.579468270122315
Merged-chr9-23570370-4	chr9	23569860	23570860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	347284.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	2.54746899887735	2.69209505561765	2.59562378545804	2.47212418712175	2.17496100860508	2.3409730981504	-1.885931234313	0.0372688862507179	1
Merged-chr12-98280724-4	chr12	98280194	98281194	+	901.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12059.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	2.92035436908561	3.02469268657624	3.12061259396197	3.13829313257921	2.82618362313354	3.13551572842748	0.0681537680997993	0.921101089875855	0.982526400261012
Merged-chr2-90472384-2	chr2	90471884	90472884	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 2 of 23)	intron (NM_008982, intron 2 of 23)	6790.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.66228053218336	2.90178131072027	2.8407921293965	2.9013573041994	2.70747558467599	2.97315987998322	0.27542139136883	0.705628303281609	0.922834459892351
Merged-chr3-89233624-4	chr3	89233115	89234115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183037)	TTS (NM_183037)	4559.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	4.75460893321497	4.53855248437806	4.86049014065538	4.52977478816075	4.35707414740568	4.62935181849335	-0.525510160826393	0.219502098933159	0.613724448754633
Merged-chr15-67480132-2	chr15	67479632	67480632	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253363.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.36969368270564	4.22263796077319	4.4353306882663	4.41912344491187	3.86682508891636	4.41952160183284	-0.239011945983811	0.634009116069608	0.896247399650521
Merged-chr2-90676963-2	chr2	90676463	90677463	+	626.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021512)	promoter-TSS (NM_021512)	-252.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	2.4265476465641	2.50155785118737	2.63384279631354	2.78536793598902	2.45718438315991	2.70791832310695	0.76982984867809	0.332693858039705	1
Merged-chr17-10373070-2	chr17	10372570	10373570	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48468.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.05646026799358	4.01053945432795	3.74042092840234	3.56452175956896	3.6795893796978	3.91341658707006	-0.733673503096784	0.179018972879693	0.560351002346369
Merged-chr1-136132162-4	chr1	136131745	136132745	+	888.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	855.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	6.45986573917571	6.50105376417669	7.01423107917207	7.07023095894958	7.15026243477493	6.80824678702457	0.544942476394398	0.060789172547076	0.319387855610097
Merged-chr11-58008746-4	chr11	58008238	58009238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028451)	promoter-TSS (NM_028451)	-326.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	6.47112022092053	6.44260961794203	6.38624926180414	6.96890173616807	6.46853358709315	6.44627035258294	0.350215788440208	0.231691447218412	0.627762355589373
Merged-chr15-59501672-4	chr15	59501157	59502157	+	980.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	127459.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.19633069037348	4.48930494535524	4.38528897528724	4.18030547898984	4.59839969058024	4.57597183408233	0.265225413466138	0.569081726218958	0.8688875602138
Merged-chr2-37426199-4	chr2	37425698	37426698	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146253, exon 2 of 2)	3' UTR (NM_146253, exon 2 of 2)	-3295.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	4.81470508574482	4.68447162421363	5.07374871532837	4.81320285437499	4.89874055820752	5.19708356319387	0.256023797768608	0.526819949474207	0.849687525994762
Merged-chr10-118096347-4	chr10	118095884	118096884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45403.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.99941641747797	8.0971788893639	7.95399606899667	8.10312009415377	8.14344126343998	7.8492510512095	0.0340123506001592	0.877201291432269	0.971507742080987
Merged-chr6-54039925-4	chr6	54039431	54040431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-1.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.29118667592748	6.00488272865362	6.36607494412604	6.09167076763915	5.92114362104413	5.89714104377964	-0.425849707942848	0.157085406014139	0.528046500148035
Merged-chr16-52093096-4	chr16	52092611	52093611	+	724.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	61562.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.26048025724437	4.61696010175706	4.16786563074167	4.66077081299662	4.66149957107168	4.72372749096286	0.748566026358963	0.0990391853586119	0.419659445705524
Merged-chr3-105055817-3	chr3	105055338	105056338	+	679.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2692.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	3.91673505141294	4.06693576533403	3.80350129265864	3.82475110378848	3.7558879594958	4.11525456994774	-0.126434072117415	0.810218111324011	0.954977386600301
Merged-chr2-4457383-2	chr2	4456883	4457883	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56407.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.15954491391312	2.91016053494498	3.06310752035223	3.65709314276715	3.39701771685219	3.38006571212591	1.83955789552718	0.00588625607765669	0.0688405120725074
Merged-chr1-193173552-4	chr1	193173051	193174051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-26.0	NM_001160359	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	7.30126879989507	7.59432823427985	7.21268911630171	7.1536563058826	7.51752873530125	7.32884113259146	-0.0587379727620519	0.819559067230539	0.957283576025177
Merged-chr1-151625915-4	chr1	151625401	151626401	+	796.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54528.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.88862276211263	5.89138462611897	5.74439614823881	5.6271963908323	5.78506841940866	5.83170282158265	-0.17889244139995	0.560145588570028	0.86517480267848
Merged-chr2-3660138-3	chr2	3659634	3660634	+	801.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53324.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.61380055061237	4.48352180420136	4.71985020055352	4.19334681543033	4.76467933756868	4.89100399190709	0.104517862234763	0.822802336737434	0.958153338614688
Merged-chr9-121675133-3	chr9	121674635	121675635	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29894.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	2.94973750633643	3.03405040624561	3.17153491078511	3.96923658431365	3.70517548567342	3.60362324981863	3.1007313427154	9.39885250725408e-06	0.000379640640496892
Merged-chr8-83748063-4	chr8	83747573	83748573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6762.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.32575514559198	8.12734262872075	8.09633592683597	8.36481647438933	8.6423215172158	8.22077922255693	0.333263364225579	0.14838230346199	0.513916562437307
Merged-chr2-148073940-3	chr2	148073444	148074444	+	967.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26975.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.60221649097353	3.74720895295975	3.95678654228611	5.10603923002769	5.7818511939243	4.92929809133354	4.39948590664488	1.36962530449942e-13	3.08010222531858e-11
Merged-chr15-55112344-4	chr15	55111832	55112832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145470)	promoter-TSS (NM_145470)	15.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	5.3964722391019	5.30796224013754	5.53459267293889	5.31199612150095	5.12124060829839	5.59639150115852	-0.130958726979095	0.715205049253489	0.926324353064633
Merged-chr7-36717807-2	chr7	36717307	36718307	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	19689.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	2.72386765254124	2.79619240443475	3.07169930948199	3.20523324669224	2.91417560293978	3.08655846702703	0.977398976696979	0.172277397947207	0.550849140713641
Merged-chr13-37679010-4	chr13	37678505	37679505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147033.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.07097410730566	6.80099150639437	6.79887631082314	6.67606737638767	6.74582107550837	6.73325043015988	-0.282897343743362	0.270207712590495	0.667203280387572
Merged-chr11-62076913-4	chr11	62076412	62077412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029936)	promoter-TSS (NM_001029936)	-112.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	5.47933186938455	5.26215094810643	5.05155062896652	5.15306533229	4.89053679289235	4.80528491132237	-0.673247245876317	0.0819744870785083	0.378718446338826
Merged-chr3-69667552-4	chr3	69667069	69668069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-54486.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.72798029179122	5.8604895409845	5.82010094222036	5.63117462607902	5.79838724291225	6.24312714756353	0.181586799811087	0.586822471098362	0.875655897836385
Merged-chr15-79545160-2	chr15	79544660	79545660	+	825.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	intron (NM_001040187, intron 1 of 12)	1399.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	5.29306099306257	5.32242913010906	5.20879992447806	5.65825984695497	5.90584736123978	5.74755258168483	0.944894381708195	0.00408820989232938	0.0528135023631335
Merged-chr15-59807951-4	chr15	59807453	59808453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12994.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.86102198423012	6.69184587692789	6.497999587275	6.72178826336219	6.86248608765397	6.62903057519149	0.0745362715404901	0.780928647299885	0.946078518476608
Merged-chr1-46854129-1	chr1	46853629	46854629	+	1000.0	f0_c57.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-511.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	7.98042144152013	7.96187800719543	7.7320589710114	7.85813146700552	7.95252481886125	7.84853123320328	-0.017767226146928	0.935425821000408	0.985852245513165
Merged-chr8-40511317-4	chr8	40510828	40511828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033560)	promoter-TSS (NM_033560)	426.0	NM_001271543	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	8.44614784123831	8.44490217954052	7.89253867209499	8.34212789492315	8.17957353214838	7.77230523202846	-0.235184965262044	0.389707470788836	0.769291741623303
Merged-chr8-60969272-2	chr8	60968772	60969772	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	14039.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	4.04519332165583	4.01027426072154	4.22554118789181	3.94529397810644	3.76622804721391	4.24983470731499	-0.29805768767858	0.563215716204587	0.865895230094843
Merged-chr2-153169257-2	chr2	153168757	153169757	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7956.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	6.78468486319522	6.33591832762399	6.80714573618802	6.75620082358493	6.7520168365327	6.6147420213475	0.0916495627702364	0.745052676099889	0.936032341688524
Merged-chr3-27237415-4	chr3	27236892	27237892	+	983.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	54388.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.27428969146664	6.38511074597863	6.16622482329139	6.01455362752526	6.71799141956055	6.24829293190647	0.152798514635393	0.63764225882284	0.89735407749672
Merged-chr10-40139843-4	chr10	40139366	40140366	+	892.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	2388.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.02613996422731	6.18504811988059	6.05707549017017	6.17686189662231	6.37555760005167	6.40044759676186	0.381803002817788	0.178181677292109	0.559276830911593
Merged-chr14-47354291-4	chr14	47353785	47354785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19575.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.62973205738509	6.5227171321026	6.50580310236695	6.5402588642867	6.76177702838438	5.84200290135584	-0.160783420774932	0.635126990619613	0.896439353901449
Merged-chr4-139195980-2	chr4	139195480	139196480	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	1869.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.70656956642592	5.77830836658138	6.13763298804466	6.32266726418008	5.89921087560833	6.15684599070863	0.445873774063079	0.168801480457316	0.545438812408496
Merged-chr13-23450645-4	chr13	23450131	23451131	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Thr-ACY_|tRNA|tRNA	15270.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	3.11643126639437	3.26177606914423	3.39720213447821	3.30158693884045	3.37863943022339	2.9942552983214	-0.0724387404197237	0.913618945732845	0.980756595579247
Merged-chr6-134535005-4	chr6	134534446	134535446	+	918.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	31967.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	6.28728992126718	6.54776215383248	6.45431608462093	7.06697735929391	7.20985627228973	6.62376261749755	0.888851231928336	0.00202552701631961	0.0312574280367066
Merged-chr5-67827132-4	chr5	67826643	67827643	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	L3|LINE|CR1	20288.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.55349294058707	5.20076759895646	5.46351036707824	5.56566162932395	5.23785161033335	5.37751779528213	-0.0287391475235068	0.935588381764417	0.985869643214979
Merged-chr15-62057634-4	chr15	62057125	62058125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	L1MB4|LINE|L1	18368.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.29342250278184	7.28412446324702	7.20905691129753	7.45401670657586	7.62622447690547	7.17937823382626	0.263906326537172	0.284644935154709	0.682372340844314
Merged-chr2-14187100-4	chr2	14186596	14187596	+	850.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 1 of 3)	MLT1C-int|LTR|ERVL-MaLR	12572.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	4.14609747908499	4.02289345968359	3.94238626807028	4.02983393094473	3.62717643341035	4.01194847785132	-0.449796549210531	0.394557574609458	0.772514857254462
Merged-chr15-81534139-4	chr15	81533642	81534642	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-52072.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	5.82109173267062	5.71232763711757	6.33109701365949	6.65871302579388	6.86577024093321	6.18799493298174	1.05695633240084	0.00204928329274559	0.0315304138347816
Merged-chr4-120885400-4	chr4	120884901	120885901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 4 of 7)	B4A|SINE|B4	30602.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	5.80565086631968	5.88995527647157	5.94254877658155	5.36664626434518	5.4107452190469	5.60864832683367	-0.777008975321968	0.0144834282764235	0.12955650275578
Merged-chr17-36252602-4	chr17	36252048	36253048	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5298.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	3.2970090485602	3.39075957458949	3.59674119185202	3.67090297364353	3.45817920245701	3.56214572716983	0.506228643280479	0.388117003475727	0.768110541937216
Merged-chr2-51148560-4	chr2	51148024	51149024	+	808.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028810, intron 1 of 4)	intron (NM_028810, intron 1 of 4)	587.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	5.33597161521928	5.24788485338095	5.03299558260455	5.06649650090217	5.12249029715238	5.38833835612692	-0.0601864668613399	0.869840952135319	0.969901645415424
Merged-chr5-43869390-4	chr5	43868851	43869851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	542.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	8.32985762274131	8.17707032924387	8.15932080979261	8.12663528585128	8.38503585322466	7.70329708775677	-0.159226552684008	0.535518884237242	0.85356400504966
Merged-chr1-66700837-4	chr1	66700365	66701365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	34.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	6.29226983457172	6.57232774058602	6.5281462168661	6.68687226984672	6.35571683537585	6.19850272093544	-0.0538968246058528	0.854899957387488	0.966038421653227
Merged-chr11-20470440-6	chr11	20469734	20470734	+	897.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73019.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.24556088495931	5.00386343984812	5.54823194448789	6.13725566099848	5.60485388895657	5.84212792739413	1.13634560044583	0.002095780436603	0.032007812063843
Merged-chr17-5804530-4	chr17	5804039	5805039	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5049.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.85001547855876	3.91153562819306	3.54444236227863	3.64813846748546	3.5415591457606	3.77748170014347	-0.452928858990209	0.420082666548473	0.789444599186155
Merged-chr16-30969482-4	chr16	30969011	30970011	+	757.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	111921.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.38977615601725	4.60815540003532	4.54222275539641	4.20503902724763	3.99395842661479	4.60791967380434	-0.611888326035443	0.206356404840558	0.596944226601764
Merged-chr8-111367049-2	chr8	111366549	111367549	+	754.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178086, intron 1 of 6)	intron (NM_178086, intron 1 of 6)	26772.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	2.5503334993894	2.61929053752883	2.96024448321675	2.60717228555476	2.56987985294765	2.86282091790571	-0.184250980037306	0.813777225077795	0.955940138311315
Merged-chr5-33005589-3	chr5	33005091	33006091	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13225.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	4.6372544289892	4.55660781930103	4.78773601550268	4.11856477416247	4.17555253168714	4.67294986589248	-0.820851132848936	0.0799842299133416	0.37406370089882
Merged-chr15-51729077-4	chr15	51728562	51729562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136399.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	5.73103156931972	5.31642866813569	5.53333318083204	5.08182734176983	5.54153737694826	5.67527204631872	-0.159858321769226	0.669795467661064	0.909752391785016
Merged-chr19-36348305-4	chr19	36347790	36348790	+	945.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30777.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	4.58098379845043	4.00807955680565	4.14730432610627	4.64447380372168	4.20877356712572	3.95253674322659	0.0788365282169595	0.885094818657761	0.973538624783452
Merged-chr9-25485702-4	chr9	25485197	25486197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4100.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	5.66016155677673	5.67502467601645	5.45507956568635	5.83628641490998	5.6744963801426	5.35770897332818	0.0736118386401112	0.828244119847527	0.959644980564395
Merged-chr2-116894786-4	chr2	116894284	116895284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5368.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.88365067316212	3.7424361111104	3.60415962580888	4.00454675693165	3.74041522591201	3.78670129616622	0.300804605954419	0.578630506602729	0.872437129840066
Merged-chr7-3290418-4	chr7	3289929	3290929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016969)	promoter-TSS (NM_016969)	-126.0	NM_016969	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	4.34673575300573	4.46568694451083	4.24490971262468	5.03442514226087	5.11824023210383	5.15467321541946	1.71721729694206	3.79567142468882e-05	0.0012557861944553
Merged-chr12-111458780-4	chr12	111458279	111459279	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16118.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.34727657556213	3.29309262044854	3.20418513470263	3.62191446522017	3.41407752537557	3.70959667062296	1.13603386060051	0.062098533423768	0.323712239639449
Merged-chr9-45396092-3	chr9	45395588	45396588	+	895.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022004)	TTS (NM_022004)	-3621.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.29822995410671	3.42658922746307	3.29512559157376	3.14073031637284	3.12289819242465	3.19352674617747	-0.809966043814947	0.195428652257021	0.583096846154808
Merged-chr8-70753851-2	chr8	70753351	70754351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-828.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	7.25384383510559	7.24996089239438	7.30452056518315	7.11260672074864	7.71473194926387	7.45809266097398	0.281201183434182	0.286075490230526	0.68342985932029
Merged-chr14-54554431-4	chr14	54553928	54554928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145462)	promoter-TSS (NM_145462)	-67.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	6.71232941918541	6.77860975062833	6.85963348393764	6.89068247219558	6.90929454766816	6.94595135266046	0.206698289887189	0.398168220869317	0.77491652996431
Merged-chr4-53264004-4	chr4	53263505	53264505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	1487.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	6.11693712523777	5.92429707634829	5.47000666958706	5.38875951752681	5.55920802829329	5.03054960399491	-0.954830763679596	0.0129655514911839	0.120702350467491
Merged-chr8-114133883-3	chr8	114133395	114134395	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290181, exon 1 of 4)	5' UTR (NM_001290181, exon 1 of 4)	321.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	3.14649169386129	2.69144666342489	3.2043961348779	2.84070270249651	2.61566220460028	3.05522528818092	-0.875056431566017	0.264260991412107	0.662208359386194
Merged-chr9-96706575-2	chr9	96706075	96707075	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	12870.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	5.50073507509677	5.71462010546653	5.44621523830235	5.12007385270785	4.93359804201626	4.84888504377459	-1.18858100719846	0.00103235687163977	0.0184690936748765
Merged-chr4-132555147-4	chr4	132554653	132555653	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8914.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	5.37518875186061	5.32656877282433	4.90041202376232	4.91516872272416	4.91527402085965	5.18136977758967	-0.477003702672102	0.219010395779797	0.613128894826908
Merged-chr12-85452969-2	chr12	85452469	85453469	+	727.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-20921.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.82230696749741	4.65625120045226	4.65564124098645	4.9585697565686	4.96039558493111	4.91753792405976	0.517315820035261	0.182810962865793	0.565687415326773
Merged-chr8-110619373-4	chr8	110618870	110619870	+	960.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151675, intron 1 of 17)	intron (NR_151675, intron 1 of 17)	803.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	7.52164497863687	8.02842198645313	7.62421003089079	7.97331010257206	8.2515439449421	7.29517131807098	0.231427832984989	0.462560342396729	0.815299769575674
Merged-chr15-31611214-3	chr15	31610749	31611749	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	9133.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	2.18867501569147	2.15982917584378	2.39859237722882	2.45452872043585	2.12643772469425	2.14394511337953	0.00806212415961507	0.9928843102186	1
Merged-chr9-107280402-3	chr9	107279868	107280868	+	998.5238039999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	9028.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	3.68527244873795	3.54725104840603	3.84396114751284	5.36936916406651	5.15696908921832	4.46399342941735	3.97138585989904	1.66609632266883e-11	2.5912624825538e-09
Merged-chr13-43787462-2	chr13	43786962	43787962	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	2350.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	6.98756063434303	6.81377081430948	6.79840104028603	6.64859557244874	6.75393487792175	7.04857276284146	-0.0808589246185719	0.760126225794191	0.940622676343281
Merged-chr6-39207531-2	chr6	39206999	39207999	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-726.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	7.62567767535969	7.51365192197241	7.37391125718254	7.40897181082866	7.39759796895653	7.40932913863592	-0.159841657548706	0.482757695390807	0.825764257746495
Merged-chr9-85391440-2	chr9	85390940	85391940	+	640.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64290.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.90325995401014	2.58218607009077	2.65879161495751	2.71658265113182	2.87817588003352	2.85863441995617	0.488765364111522	0.518176449768476	0.84512183998462
Merged-chr8-124250999-4	chr8	124250500	124251500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	19606.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.45997804177467	4.23117746220857	4.47056601593114	5.36995961651014	5.17178817544734	4.83926360368242	1.76938623079848	3.16954755686514e-05	0.00107998244517459
Merged-chr4-59362806-4	chr4	59362286	59363286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75847.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.6217399001559	7.85637495811748	7.65611585044282	7.19847053460229	7.33886031102769	6.97315978602009	-0.775893212872575	0.00159280149718699	0.0259209518830305
Merged-chr5-90247317-3	chr5	90246824	90247824	+	849.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23328.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	5.37933798779295	5.20086275636288	5.44756438707801	5.32867042699818	5.40959495557049	5.45258462607817	0.110829959526594	0.744680063138248	0.936032341688524
Merged-chr2-61594964-4	chr2	61594476	61595476	+	770.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149323, intron 2 of 9)	MTD|LTR|ERVL-MaLR	1879.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	5.87350346372928	5.82608341308515	5.65373878542438	5.99178257210486	5.97551974610353	5.65965180075472	0.177352495277121	0.573066295991723	0.869947175774374
Merged-chr8-22477790-4	chr8	22477320	22478320	+	663.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-941.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	6.68040077848826	7.01978077160569	6.78122517946716	6.96525250669318	7.24385825608215	6.80871224468205	0.291636268049353	0.28705848835249	0.684323804399215
Merged-chr1-154103227-3	chr1	154102734	154103734	+	796.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97953.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	5.86866858934138	5.45450430276504	5.3414151316439	5.16406367819996	5.36194318886449	5.16932293257898	-0.66385053542291	0.0711988793347136	0.350012782209787
Merged-chr1-153501252-2	chr1	153500752	153501752	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13592.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.57206725972314	6.73559695413416	6.74679263695524	6.60941751942337	6.66534005524157	6.9198208556942	0.0726709537029475	0.782716434238177	0.946686857667455
Merged-chr9-90067593-4	chr9	90067152	90068152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 7 of 10)	intron (NM_001312649, intron 7 of 10)	13385.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.80525118691797	3.84331343147584	3.77249628176055	4.0734704409813	4.31101214907819	4.3637407723651	1.3136291343021	0.00880141041269351	0.0921655874174933
Merged-chr11-70646039-2	chr11	70645539	70646539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024211, intron 2 of 7)	intron (NM_024211, intron 2 of 7)	1000.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	4.14484394526349	4.21956376077264	4.28346005983574	4.16937362713421	4.02663518395971	3.92044597571047	-0.477178873297223	0.321377561813317	0.714837665357421
Merged-chr11-23633703-4	chr11	23633195	23634195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-64.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	6.13142412418495	5.90233225834539	5.82216822861409	5.83264276506018	5.46533764510967	5.64412626214956	-0.562746727368616	0.0827089412600051	0.380436207266671
Merged-chr8-109778531-4	chr8	109778029	109779029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-54.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	8.26429884163056	8.53508546269066	8.22209290133831	8.38905203371947	8.30626085884334	8.28416151530155	-0.0344426331738073	0.873589616153321	0.970440430875665
Merged-chr17-62623389-4	chr17	62622889	62623889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	257928.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	3.45886378165462	3.26160116747585	3.68973710625944	3.48082724752173	3.47438903837504	3.21102227499928	-0.282496463545049	0.652967374293563	0.903046151766902
Merged-chr2-119167785-4	chr2	119167322	119168322	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	34.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	3.01368804415492	3.27565618811905	3.35957461860694	3.18567496141389	3.30533220562984	3.02325090281461	-0.161382722471718	0.809359617236323	0.954721853010197
Merged-chr13-17949836-2	chr13	17949336	17950336	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5619.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	4.15124505931666	4.0091860841569	3.94572509856872	4.07875187897369	4.07584625907014	3.96467018312041	0.0050755963006879	0.991728169431341	0.998351393644539
Merged-chr8-69124737-2	chr8	69124237	69125237	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16216.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	2.16721994303701	2.26051880511021	2.33912806370903	2.07132197278611	2.06800181295856	2.15403488857057	-1.19017517124885	0.186701830926746	1
Merged-chr19-37049241-3	chr19	37048768	37049768	+	722.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	123189.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	4.60664762301131	4.73832631413533	4.92908989652498	7.02924279648129	7.31055610623656	6.64774364955621	4.28061950696175	4.25207441346346e-30	2.72158929073437e-26
Merged-chr11-96304259-2	chr11	96303759	96304759	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008268, intron 1 of 1)	intron (NM_008268, intron 1 of 1)	747.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	4.32875053064787	5.08872550783981	5.11926437188057	4.18026006492438	3.90682149115969	4.26279362371661	-1.96996414539191	0.00013419848339596	0.00363370888591312
Merged-chr8-95081023-4	chr8	95080507	95081507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028805)	promoter-TSS (NM_028805)	-194.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	6.2068654068072	6.28273082681038	5.82529659008758	6.2858330290361	6.08400954998426	6.46685302855943	0.246023665472968	0.430361494054608	0.796220434934334
Merged-chr12-62017961-1	chr12	62017461	62018461	+	554.0	f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	494794.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	2.25945026819878	2.33565893436849	2.38750686112372	2.00007462554446	1.91780798675254	2.0669617254485	-3.10879118814658	0.00511335278525638	1
Merged-chr7-127253389-2	chr7	127252889	127253889	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	intron (NM_001360916, intron 2 of 2)	7278.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	4.95990997877191	4.84264836953287	5.0405547061543	5.13196298808765	5.05030364123792	5.13834652824579	0.343131567888874	0.351036553971433	0.738927106247438
Merged-chr17-72833482-1	chr17	72832982	72833982	+	732.0	f0_balb.idr	Intergenic	Intergenic	-3146.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.36390427205672	4.454271089755	4.7512943926418	4.62181439775736	4.48542872976288	4.27755598022316	-0.121322189259516	0.788027806215164	0.948821649030509
Merged-chr5-135551121-3	chr5	135550624	135551624	+	878.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6002.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.50407417617474	4.07271467640623	4.22850114009027	4.02513380424501	3.85281558150912	3.9597214796241	-0.976187232870112	0.0521538387470802	0.291845161360924
Merged-chr4-86689871-3	chr4	86689373	86690373	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19814.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.93476975174402	8.20302006647873	7.53355750576821	6.88898592120337	6.91509502713645	7.21608077352679	-1.34803313168814	9.05591555979903e-07	4.97047903627808e-05
Merged-chr2-72850035-4	chr2	72849560	72850560	+	787.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36343.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	4.53351966779241	4.17618074513554	4.0556370582721	4.60698665856023	4.34268085187438	4.37145567798099	0.42687208826742	0.375371706898712	0.758646622209238
Merged-chr12-3420684-4	chr12	3420178	3421178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	6069.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	5.15264817175558	5.00095584362911	4.9897906810798	5.15355869472149	5.27851335795433	5.57437724968696	0.58235469908777	0.114714963506598	0.452186398382538
Merged-chr5-130159986-4	chr5	130159427	130160427	+	927.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11892.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	3.63664876783311	3.70489206655401	3.40427945978655	3.64707053457046	3.55662494454543	3.69924959677084	0.1240987294925	0.827385050016743	0.959445425237295
Merged-chr9-113742675-2	chr9	113742175	113743175	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1202.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.30412866462154	5.63707689178343	5.25729253144349	5.52988661329793	5.91474427144001	5.62924016204084	0.542789951695936	0.124907870636233	0.472868997683394
Merged-chr16-31024503-4	chr16	31023988	31024988	+	801.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56944.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.75437805273846	3.63798660877013	3.59966402555691	3.63248259671477	3.534927277027	3.67016300159683	-0.206525404087902	0.707254035771082	0.923298406106878
Merged-chr13-110672798-2	chr13	110672298	110673298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230701.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	3.37106796363746	3.28071112562973	3.17527515403439	2.88368948129274	2.98483023104289	3.30341791701633	-0.946178804615634	0.166214071190568	0.541347284939125
Merged-chr4-116651559-4	chr4	116650967	116651967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021473, exon 1 of 9)	5' UTR (NM_021473, exon 1 of 9)	207.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	8.20151589530305	8.55381786309809	8.28219609315274	8.25750142858568	8.59137606382231	8.06754401358359	-0.0359995659495488	0.885008353632912	0.973538624783452
Merged-chr18-75905066-2	chr18	75904563	75905563	+	564.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84885.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.7449840828753	3.72089864329165	3.84275024903835	5.11644781031605	5.23580941601464	4.93438333865974	3.80208063784257	7.58556984378676e-13	1.47817352590587e-10
Merged-chr5-129018911-1	chr5	129018411	129019411	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1245.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	3.95758393677556	3.60855857965043	3.72809003508965	3.66593898041956	3.5775671207288	3.89730420710477	-0.206633156841014	0.711196514075651	0.924615473629055
Merged-chr1-34855226-4	chr1	34854748	34855748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	MTD-int|LTR|ERVL-MaLR	5259.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	6.62270190423794	6.65837384927525	6.51722733655978	7.20462402494255	7.40872858199601	6.71954307396981	0.847431264879013	0.00321561232789117	0.0444459585679682
Merged-chr8-83166621-2	chr8	83166121	83167121	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	1269.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	7.3230966877716	7.58929604107983	7.1550665644374	7.77658253482663	7.73009965620177	7.48131883281151	0.432808110585035	0.0850284539450321	0.386129323574646
Merged-chr11-69130422-1	chr11	69129922	69130922	+	642.0	f1_c57bl6.idr	intron (NM_011786, intron 5 of 14)	intron (NM_011786, intron 5 of 14)	4045.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	3.04042054082927	3.31676532100546	3.23203573886929	3.59613320060875	3.52710979362711	3.63671146719855	1.49595755011372	0.016748666038617	0.143539293824415
Merged-chr4-101264727-1	chr4	101264227	101265227	+	1000.0	f0_balb.idr	intron (NM_146145, intron 1 of 24)	CpG	555.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	8.2610737886412	8.43286923568682	8.00026011348033	8.0641764530437	7.99479271812314	8.14223793974486	-0.259581498357337	0.254521490159712	0.651549145019594
Merged-chr12-73682892-4	chr12	73682393	73683393	+	980.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	98097.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.27344818256979	5.27624464314192	5.58499787994933	5.17426205546797	4.86330703415675	5.22109520165473	-0.596278741961081	0.110084208455951	0.443363350300229
Merged-chr15-59822328-3	chr15	59821835	59822835	+	833.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27376.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.61492061392597	4.14718893744523	4.67107463639363	4.43080533475341	3.76829188222018	4.19989541898481	-0.881073467280457	0.100937009669606	0.423730725018345
Merged-chr2-32134228-4	chr2	32133700	32134700	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16948.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	2.39585029682408	2.14264966364128	2.31179138964457	2.60403187289918	2.21884620990572	2.51933937951559	1.07243889240379	0.228833164942366	1
Merged-chr5-150836967-4	chr5	150836459	150837459	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115648.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.64029011908632	4.36152250506039	4.48802986404195	4.50066566555808	4.78260386708029	4.5973496191536	0.332315053179228	0.44150641276882	0.802671813286054
Merged-chr17-26509646-4	chr17	26509156	26510156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1184.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.24687094590437	8.31137089113622	7.90486565317975	7.92062675500818	8.08427434037446	7.9207611613816	-0.272184855999624	0.238518825228053	0.635267379893833
Merged-chr3-65990755-4	chr3	65990258	65991258	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-32509.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.62042182405755	3.62670894933244	3.69097723124733	3.62066691623774	3.68289592928353	3.48917636379898	-0.130984544355026	0.813288463097516	0.955940138311315
Merged-chr9-118675310-2	chr9	118674751	118675751	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	RMER1B|Other|Other	-36441.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.5966549110118	6.70491081542806	6.79397865804894	6.65403684467336	6.81385027442967	6.73083943680351	0.0647671777664731	0.79968848212942	0.952265144270204
Merged-chr17-25011902-2	chr17	25011402	25012402	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	3328.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	2.69667860375943	2.7422901096015	2.78907989833098	2.70484249310058	2.3802089258769	2.86209087759912	-0.436034146107069	0.590182311531014	0.87713052060241
Merged-chr11-120064652-1	chr11	120064152	120065152	+	583.0	f1_c57bl6.idr	exon (NM_009734, exon 26 of 26)	exon (NM_009734, exon 26 of 26)	-17507.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	4.03228461893785	3.98340975533976	4.13777046824607	4.37021571072511	4.08961480338001	4.41987196261747	0.694157224259016	0.148851163182583	0.514801429240467
Merged-chr1-82798531-4	chr1	82798029	82799029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30073.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	6.47671611781867	6.44745684257138	6.49469168744474	6.47493187450794	6.601419107506	6.65486796757643	0.169958364871453	0.514218474836843	0.842998279174159
Merged-chr9-14276173-4	chr9	14275665	14276665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030261)	promoter-TSS (NM_030261)	-136.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	6.28763277434905	6.43654329497207	6.04927451902152	6.23458619291178	6.12348390461711	5.99106278934631	-0.257469049381168	0.38329258809496	0.764716365434363
Merged-chr17-78373975-4	chr17	78373446	78374446	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44206.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.900117235536	5.45327753474741	5.89669995687477	5.65367736908998	5.6028527294971	5.21700965716131	-0.45511308945096	0.206763005987528	0.597372784798965
Merged-chr16-58453121-3	chr16	58452639	58453639	+	994.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	44604.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	4.64793856086111	4.76385721633945	4.91637462101437	4.19694936249669	3.74921609390947	4.03299047130942	-2.10857406054809	2.00036366227345e-05	0.000730668391617425
Merged-chr6-92183979-4	chr6	92183450	92184450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025578)	promoter-TSS (NM_025578)	73.0	NM_025578	64658.0	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	5.4058352483913	5.46578709045182	4.93773296361398	5.62920448751079	5.10490496476942	4.88105278971709	-0.0961234205600834	0.821775686010693	0.958023303204974
Merged-chr13-28953868-4	chr13	28953362	28954362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009238)	promoter-TSS (NM_009238)	-163.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	4.54562940003394	4.52482431109403	4.48723197137226	4.07892595185834	3.73932544390188	4.1097541124024	-1.53570842038441	0.00164837861080944	0.0266378495723892
Merged-chr15-59728331-4	chr15	59727838	59728838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66621.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.9006634219979	7.92509738562259	7.48945801415379	7.72263147465459	8.01992239211721	7.72283632216171	0.057693982775088	0.817548617083694	0.956767881392089
Merged-chr10-78461658-2	chr10	78461158	78462158	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172134, intron 1 of 10)	RMER1A|Other|Other	3290.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	2.432387498794	2.25646579770122	2.56949841962427	2.33664361258382	2.15390557054913	2.45821215816269	-0.676330364565299	0.437564010975694	1
Merged-chr3-146110585-4	chr3	146110098	146111098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-2562.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	6.19638720672864	6.1938761562894	6.21096600612224	5.19853491816627	5.2053098464872	5.41878368892172	-1.7150814510959	5.07415246132961e-08	3.93852684703651e-06
Merged-chr6-17586282-2	chr6	17585782	17586782	+	968.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50728.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.00266671765444	2.96402924619139	3.08542961785174	3.62136520656339	3.78205672570683	3.28872432256891	2.45901002624142	0.000321508957435072	0.00737525728302679
Merged-chr7-29853608-4	chr7	29853100	29854100	+	976.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173738)	promoter-TSS (NM_173738)	48.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	4.27651021902768	4.4739130784322	4.38140386961089	4.29227611154297	4.07471365377035	4.12818887629887	-0.579578615537381	0.210053466857075	0.602029790239856
Merged-chr1-16111014-3	chr1	16110553	16111553	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	5171.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	3.42741776363665	3.38309002384059	3.29407036565449	3.30419877590157	2.92847887392337	3.12880978635608	-1.03163332289509	0.119075766490854	0.461333350941517
Merged-chr8-120537289-4	chr8	120536798	120537798	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	-111.0	NM_001145896	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	7.04096958155318	6.97891773740296	7.14061100604132	7.13575576911474	7.02636748019482	6.96386968750954	-0.00723330413284961	0.976005651379877	0.994572735300192
Merged-chr5-43187509-4	chr5	43187004	43188004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	ORR1F|LTR|ERVL-MaLR	-45959.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.12512890114096	6.42989141346161	6.0905345796943	6.4771254969045	6.80935012322493	6.38585962364631	0.568113547923596	0.0579704741457748	0.311100110462537
Merged-chr16-93031046-2	chr16	93030546	93031546	+	782.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-204972.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.18934607500967	5.00098428656451	4.87829876620434	4.82408111165094	4.76358532843561	4.9439110837047	-0.43321405736967	0.261380250457465	0.659058420608022
Merged-chr8-84703664-2	chr8	84703218	84704218	+	876.625	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081981)	TTS (NM_001081981)	2261.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	2.99862102001697	3.19848141368592	3.37705383759257	3.1445736545508	2.86946991447873	2.93323602658718	-0.932834708768245	0.180149841643087	0.561849644263301
Merged-chr2-59332741-4	chr2	59332238	59333238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	53944.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.80170485922699	4.54410929699124	4.93498760974955	4.86848926745266	4.80997953443145	4.78102411848044	0.13798680168262	0.733013350687422	0.931985446585439
Merged-chr15-77798849-3	chr15	77798359	77799359	+	758.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41849.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	4.72799347939439	5.01781763592418	4.92523206508343	4.85126778973107	4.89884324928813	4.91792231307976	-0.0157705667092812	0.967527182059085	0.992568985241011
Merged-chr11-69681352-3	chr11	69680864	69681864	+	938.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163571, intron 1 of 10)	intron (NM_001163571, intron 1 of 10)	606.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	8.09436312809373	8.24868809635471	7.88096680594732	8.06414168626612	8.28630769793716	7.96907212319655	0.0421302128187319	0.8567799775673	0.966617607058966
Merged-chr18-53861500-1	chr18	53861000	53862000	+	588.0	f0_balb.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-613.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	5.89013168517807	6.02250830167878	5.66598978237622	5.80042221655818	5.7378065258206	5.67276065605542	-0.247639624907641	0.429874939515947	0.795893239447353
Merged-chr13-37816474-2	chr13	37815974	37816974	+	669.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-9564.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.57222604578035	3.48391149784972	3.62456596605597	3.79712079328291	3.65982870598404	3.89499486795193	0.763611677296729	0.16403469997816	0.538101489858471
Merged-chr16-33923095-4	chr16	33922579	33923579	+	890.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43959.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.50867475051888	7.91227992866256	7.7142085717244	7.68178310321216	8.124748040469	7.57307121928189	0.145899832102982	0.585524480190305	0.875041527312205
Merged-chr9-118694656-2	chr9	118694156	118695156	+	728.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-17036.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.82176059361342	2.68519718923858	2.93300754871048	2.64359329202715	2.68825478507571	2.64087121093898	-0.823962340066957	0.270288994506395	0.667262939156975
Merged-chr11-69994120-2	chr11	69993606	69994606	+	828.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	B1_Mur4|SINE|Alu	-1660.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	5.85275952399964	5.70843313523147	5.69890243017531	6.13839021164978	6.1482376365441	6.35960726297014	0.78871528939157	0.00812746363520921	0.0869912521428464
Merged-chr11-50210277-4	chr11	50209802	50210802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 1 of 7)	CpG	518.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	8.39934932565932	8.40203820484769	8.01146216396039	8.00102369247477	8.12519900410849	8.02992990346243	-0.331463416756685	0.145585235868594	0.508750422332281
Merged-chr1-138619705-3	chr1	138619210	138620210	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	47.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	7.53806750012831	7.59527767022001	7.42641846495836	7.22421185579695	7.07020163029484	7.15069493600963	-0.56047909605589	0.0150344971842498	0.132938334216887
Merged-chr15-80711872-4	chr15	80711295	80712295	+	885.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 1 of 24)	CpG	482.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	6.96132751713964	7.04545068726891	6.81050714931945	7.00697605002204	6.92959867947078	6.4881772257418	-0.167066579060059	0.5447366848021	0.857894224757806
Merged-chr18-25168866-4	chr18	25168381	25169381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142698)	promoter-TSS (NM_001142698)	-4.0	NM_001004361	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	5.79856540921861	5.95009612892436	6.30953988930595	6.01438093935888	5.98490135827973	6.21804630025396	0.0776316452248689	0.805635606280072	0.953956034266138
Merged-chr3-144687903-2	chr3	144687403	144688403	+	888.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	32432.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.79849501426398	4.34480880170079	4.32536191656088	3.88427223287614	3.97972958377646	3.77567407134427	-1.75280881004364	0.000819207209419375	0.0154183654108499
Merged-chr10-94405680-4	chr10	94405156	94406156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	L2c|LINE|L2	93707.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.04610168308514	4.06679358573242	4.48038961364467	4.07523598272466	4.38372025728889	4.38624367413081	0.239428324703424	0.626554419958384	0.892916235446326
Merged-chr9-21717583-2	chr9	21717083	21718083	+	953.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5993.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	4.56805516370357	4.85047688031321	4.75747637153293	4.90816212065433	5.07384963956621	5.00747976360463	0.600932354040496	0.126025889545995	0.474777397325473
Merged-chr11-116846778-2	chr11	116846278	116847278	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028865, intron 1 of 4)	intron (NM_028865, intron 1 of 4)	3263.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	3.29272113419028	2.99233204743785	3.73666236461266	3.25334264312051	3.25019100052414	3.93589197784001	0.504712916057777	0.489134422123854	0.829459847891797
Merged-chr9-121877282-4	chr9	121876796	121877796	+	783.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19500.0	NM_001357840	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	2.86879649646269	2.83405854959108	3.11244627614423	3.24510923268278	3.45939504681307	3.4623337368519	2.08206294880202	0.00262082652002507	0.0380083968815296
Merged-chr11-75139792-2	chr11	75139292	75140292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	28360.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.18885904843891	3.75078578677082	4.06337546901962	4.20321356517389	3.84980923752237	3.93595420791823	-0.0261199309062845	0.960723164815381	0.990386809359123
Merged-chr9-75405984-2	chr9	75405484	75406484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	B2_Mm2|SINE|B2	3375.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	3.51970175888731	3.77920739748491	3.75898693500001	3.90846220060982	3.52916729396408	4.19355564096834	0.660101438220237	0.259190934494402	0.656825376873982
Merged-chr10-80929920-4	chr10	80929402	80930402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-189.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	7.48254111000015	7.44546026264721	7.53297811475844	7.54217359528456	7.76447856912526	7.26430037879628	0.0955713948965297	0.699555046564198	0.920619136555148
Merged-chr6-87481465-2	chr6	87480965	87481965	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	ORR1A3|LTR|ERVL-MaLR	14862.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.85590687537226	2.65601185258463	2.88263357903042	2.59497008843435	2.60776547799171	2.83740075979547	-0.641055162728886	0.394798570753818	0.772579826044138
Merged-chr6-39129947-2	chr6	39129447	39130447	+	765.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045813, intron 1 of 3)	intron (NR_045813, intron 1 of 3)	11474.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	3.58323864914842	3.75938663313987	3.83902471645962	3.8323615814717	3.90488518157344	4.00343257503676	0.595974151144853	0.257165810092971	0.654457620898992
Merged-chr9-118762265-4	chr9	118761787	118762787	+	871.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	50595.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.25890429566539	6.42525679793378	6.10158442926146	6.53897885257803	6.34166359313934	6.16274825035546	0.140324391831524	0.631079443624881	0.895015555457654
Merged-chr12-72760493-4	chr12	72759995	72760995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-716.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	8.62140950744144	9.01486383453389	8.36288459138897	8.52264532883888	8.76226235323854	8.29830302706799	-0.212801477558169	0.419461392857621	0.789025513211189
Merged-chr1-172217318-4	chr1	172216790	172217790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009813, intron 2 of 10)	intron (NM_009813, intron 2 of 10)	2605.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	4.29164634539533	4.16552552648842	4.08061272698829	4.09371026498385	3.83855954776045	4.49237826987235	-0.0739653192798386	0.886806577315983	0.973794308941933
Merged-chr2-160336589-3	chr2	160336123	160337123	+	825.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9129.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.81737737768356	5.54404716068507	6.09544325466564	6.22299445508387	6.25793791463405	5.77508555533917	0.497586376835586	0.142700094549609	0.504233853663683
Merged-chr1-151958672-4	chr1	151958171	151959171	+	971.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	L1M3|LINE|L1	131649.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.6437926475813	4.01290231559573	3.61280188042681	3.64492987648739	3.62929486636417	3.3902317823859	-0.713470883922962	0.227654933741226	0.622808210644087
Merged-chr3-28109519-3	chr3	28109064	28110064	+	834.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	125393.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.23405722195096	3.34112019508746	3.35107340970925	3.50283205382743	3.22114647607883	3.24973993170982	0.0881688736175003	0.886460668236338	0.973794308941933
Merged-chr11-69332001-3	chr11	69331477	69332477	+	855.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010599, intron 13 of 13)	intron (NM_010599, intron 13 of 13)	5719.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	4.56685821735744	4.45586548364998	5.03160730171055	4.62565413940415	4.34701916695498	4.76105477362553	-0.279128814330876	0.543863164466188	0.857551302506722
Merged-chr7-25265931-2	chr7	25265431	25266431	+	772.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C2|LTR|ERVK	-1768.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	3.93641227263525	3.49888045767564	4.04566539684278	4.39267263115877	4.22164086206711	4.57666618110021	1.60670098473129	0.00316823065775452	0.0439223819677505
Merged-chr3-105016408-3	chr3	105015908	105016908	+	907.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	L1ME2|LINE|L1	36545.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.05349313729151	5.0264365019903	5.42933037512474	5.25394637514276	5.20183060542082	5.12382635247096	0.0567581094034994	0.877997550537521	0.971816559882595
Merged-chr11-100719436-4	chr11	100718938	100719938	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 2 of 5)	intron (NM_001305003, intron 2 of 5)	5588.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	5.16830528922496	5.10666960201435	5.39232165897496	5.34386188219823	5.36756695325748	5.53865385907436	0.390285294579028	0.263038483144547	0.661066252782647
Merged-chr5-88980840-2	chr5	88980340	88981340	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-47126.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	3.79350386252578	3.79996971639467	3.28932668259679	3.73068619786125	3.43555603027045	3.71418216542017	-0.0814073179753794	0.896046599532609	0.975727238217441
Merged-chr10-121462356-1	chr10	121461856	121462856	+	1000.0	f1_balb.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	13894.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.09783296278508	7.22141492899483	6.86595789575405	6.42913153998204	6.62573112796636	6.28573868510008	-0.952377920249148	0.000520692560144856	0.010812524717877
Merged-chr3-108256171-4	chr3	108255672	108256672	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	-754.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	5.810602430914	5.89547065640392	5.52286257982944	5.83464255162661	6.08677976503068	5.67568634181408	0.22428620860388	0.497701710643027	0.833770467452658
Merged-chr2-32362204-2	chr2	32361704	32362704	+	939.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	-806.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	5.60715699671375	5.77553763977844	5.83741001733129	5.67050245109771	5.92128947474394	5.58111826274107	0.010687536209541	0.97365712163937	0.994039095662068
Merged-chr2-37359253-4	chr2	37358766	37359766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026176)	promoter-TSS (NM_026176)	66.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	6.31695366122864	6.5009235497921	6.71979853460239	6.64192718237059	6.66182663042462	6.76329567088107	0.276724035761658	0.307574857038972	0.703695144339926
Merged-chr11-23895236-4	chr11	23894753	23895753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172555)	promoter-TSS (NM_172555)	17.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	5.50626010142043	6.04823270212438	5.74910203483987	5.78715697579724	5.85104386244681	5.88591417717906	0.0856819535771909	0.796453663047053	0.951430675491237
Merged-chr2-170330006-4	chr2	170329508	170330508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26353.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.3079421880527	7.01760577249468	7.01631198057011	7.22585588741646	6.88309707091874	7.2826498781914	0.0147827534163427	0.95550628594865	0.989763164889919
Merged-chr1-165635589-2	chr1	165635089	165636089	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.79208534653978	3.10507570729774	2.60070658301288	2.92036658747137	2.73212792396053	2.99131042170028	0.143591098824065	0.856508390827286	0.966529239953755
Merged-chr16-29772794-4	chr16	29772345	29773345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	193511.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	3.55445905590238	3.67531945756638	3.48849289300125	3.3796105608608	3.52711710062685	3.76461072117254	-0.0651748951688157	0.910847932262866	0.979969158480567
Merged-chr3-103205859-2	chr3	103205359	103206359	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34204.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	3.93372947964153	3.83848701184233	4.14916639112112	4.1231432773627	4.16832764744767	4.12579474350129	0.498004746518286	0.309148891425389	0.704802606494279
Merged-chr9-111289669-4	chr9	111289169	111290169	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	17824.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	6.57999019100996	6.63439269223154	6.52418895503185	6.86569701625958	7.04373937527058	6.73677431816698	0.490893680665223	0.0578637687494364	0.310868315476699
Merged-chr14-69804862-4	chr14	69804371	69805371	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	674.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	6.63844630533442	6.88548599968286	6.84783029744519	6.84881143808976	6.96733133457665	6.94847297261785	0.200601112123537	0.426103872438977	0.793608447889301
Merged-chr16-44127257-2	chr16	44126757	44127757	+	974.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	L1M2|LINE|L1	12002.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	5.8584522609659	5.77674320682907	5.81601567830437	6.1079250394335	6.20299377786977	5.90328016186005	0.471848202839996	0.114358643271476	0.451636423866224
Merged-chr3-97768102-4	chr3	97767612	97768612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110360)	promoter-TSS (NR_110360)	-98.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	6.89505149031844	6.77624593307339	6.72147715961123	6.870693515545	6.91912644211817	6.87187696719303	0.132147645661378	0.591951648705961	0.877861524708363
Merged-chr11-69257991-4	chr11	69257486	69258486	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20964.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	5.79461443513787	6.11216166548569	5.90903624122923	6.05301496863804	6.50560055374496	5.84265548602033	0.397004315163319	0.239273303442677	0.636064439885572
Merged-chr10-82866512-4	chr10	82866026	82867026	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-100.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	5.39214434115488	5.09130156899983	5.42053791656179	5.89065515872177	5.60414636070944	5.51380420196525	0.724146653294926	0.0383369407236421	0.242426125421873
Merged-chr3-59260334-2	chr3	59259835	59260835	+	740.5	f0_balb.idr|f0_c57.idr	intron (NM_177855, intron 31 of 43)	intron (NM_177855, intron 31 of 43)	2650.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	4.77673889258345	4.8183796460428	4.63984186643962	5.00393531707296	5.04613041007587	5.41712253716127	0.878875957726587	0.0269347796613677	0.195437147492332
Merged-chr14-73389288-4	chr14	73388785	73389785	+	845.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3996.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.45446542620081	7.55100335720046	7.25227725240377	7.17313615121286	7.55865353398722	7.18712746685062	-0.150821826347293	0.556345450508983	0.86357390983939
Merged-chr5-113812218-4	chr5	113811701	113812701	+	916.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-11849.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	3.42690273146486	3.25111252797964	3.40882634706572	3.42808141066586	3.39061090762962	3.87622426324281	0.779382588718875	0.205551077803114	0.596131993192832
Merged-chr10-79669152-5	chr10	79668676	79669676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148934)	promoter-TSS (NM_148934)	-234.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	6.09061775584153	6.13119803832982	6.29532392369958	6.39797388519441	6.34558330084664	6.35512469184065	0.330106076191261	0.229830170881873	0.625509726187777
Merged-chr12-70112500-2	chr12	70112000	70113000	+	608.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	-465.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	5.82823944100081	5.71553693133077	5.89148050983333	5.87672261647755	5.91311641897876	5.55206463447416	-0.0114054337540962	0.971337834420096	0.993738007006579
Merged-chr1-180957267-4	chr1	180956764	180957764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 8 of 22)	MTD|LTR|ERVL-MaLR	14746.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	6.10517382491322	5.82089918016992	5.66876759130063	6.00073460259773	6.19980285362423	6.08319550698189	0.367820520051036	0.239057699215991	0.635755338671829
Merged-chr6-37464121-1	chr6	37463621	37464621	+	1000.0	f0_c57.idr	Intergenic	Lx8|LINE|L1	-21973.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	2.63864455178738	2.8867450775724	2.85443238556353	3.41174258774979	3.41036224260637	3.35697558474421	2.97812314921951	0.000158458490755547	0.00414884018212322
Merged-chr16-92715640-4	chr16	92715137	92716137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18308.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.37718368229487	5.5006773239397	5.4919554316223	4.70423725895698	4.34865081189284	5.14457061057871	-1.49269384088499	0.000481835064327715	0.0102172609665088
Merged-chr13-74770667-4	chr13	74770167	74771167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301156)	promoter-TSS (NM_001301156)	69.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	5.81204291747344	6.01177924935225	5.97076425903875	6.0225145850189	6.08293909995784	5.88781899359723	0.129331142674889	0.66363521718796	0.907297207161427
Merged-chr16-11010036-2	chr16	11009536	11010536	+	994.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 1 of 2)	RSINE1|SINE|B4	1138.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	3.32492581400464	2.98223973439246	2.89095727980882	3.11102315764529	2.87058888376508	3.09046601764335	-0.264044735303198	0.710243204666315	0.924293540432205
Merged-chr19-41280731-2	chr19	41280231	41281231	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	B4A|SINE|B4	-16727.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.65525817888382	2.92357566007153	3.11480842634051	2.71366848376188	2.75546687608429	2.78224671297917	-0.787501838106854	0.293622677676946	0.690424156263798
Merged-chr1-138165639-1	chr1	138165139	138166139	+	629.333313	f0_balb.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	9487.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.73637856322633	4.85965357509573	5.24924181473988	4.93406471166474	4.89565975544949	4.77127704862182	-0.179181556094652	0.659490165816052	0.905465938176062
Merged-chr15-97673066-4	chr15	97672550	97673550	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32772.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.62053343642345	5.49908479581799	5.33379120267019	5.09960190473165	5.0186896227072	5.02155912113182	-0.907257752248647	0.00992844158253271	0.0999754657563469
Merged-chr3-32509581-2	chr3	32509081	32510081	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161818)	promoter-TSS (NM_001161818)	-969.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	4.06534472966729	3.82347864587502	3.77820843880912	4.22912473102911	3.95048945038642	4.36886137902498	0.831969959389396	0.110760932082266	0.444818554790348
Merged-chr17-34303968-2	chr17	34303457	34304457	+	746.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1910.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	4.94777718014843	4.5053754686664	4.58747559625257	5.75851820809127	5.4465276265917	5.43284924381255	1.77363343249222	1.13360102823754e-05	0.000445768782408265
Merged-chr6-125378320-4	chr6	125377843	125378843	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 3 of 16)	intron (NM_198604, intron 3 of 16)	2161.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	2.62595272262737	2.71148001693734	3.05738391498306	2.60765969520905	2.62773017761815	2.53223617168448	-1.15832399156458	0.144646542434183	0.507494919162737
Merged-chr2-18996982-3	chr2	18996441	18997441	+	948.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	1180.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.43651268499045	5.00493717286971	4.82955127352452	4.93805860821979	4.6001201343901	4.93079310319391	0.10279499427497	0.815065036735918	0.956370078970016
Merged-chr12-99544486-4	chr12	99543986	99544986	+	741.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19355.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.4097942933139	3.38191466055115	3.45387682638204	3.71976604919134	3.57657799074592	3.58050408210549	0.781480242235618	0.169500360187124	0.546370768477266
Merged-chr8-75193232-4	chr8	75192750	75193750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20B|LTR|ERVK	-20694.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	3.40539979128761	3.24000018952137	3.52922963919523	3.37122547639177	3.19626532857142	2.95383332167584	-0.824613345103433	0.224144233273238	0.618975994077385
Merged-chr12-12302015-4	chr12	12301513	12302513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	39874.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.91462210579044	6.85050429630857	6.83982696188743	7.102695600437	7.09890932703163	6.89827963508696	0.264416931499565	0.27880433037226	0.676190705421913
Merged-chr1-78536917-4	chr1	78536410	78537410	+	735.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	25850.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	5.00306231344649	5.26972241477857	4.63538085393937	4.59760032528666	4.34365044709019	4.52723614425877	-1.20435543429278	0.00606177299245437	0.0702783902962441
Merged-chr11-93963210-4	chr11	93962687	93963687	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5334.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	3.30586257599633	3.10980608279916	3.32804235755304	3.02495849757304	3.19626118433499	3.34451304296663	-0.237212564101671	0.713287567614568	0.925479342928394
Merged-chr7-127776537-4	chr7	127776048	127777048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-841.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	7.01741804006218	7.40211310926798	7.30725650887561	7.09963875511183	7.33477408923801	7.40727985156329	0.0499209391653289	0.845363153327825	0.963773214686551
Merged-chr10-57486821-4	chr10	57486267	57487267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	382.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	6.37600714910078	6.11025230344875	6.36211707073858	5.97444456243115	5.90502027855527	5.81652280225291	-0.657263397801322	0.0258986353547835	0.190785310578995
Merged-chr12-83597236-4	chr12	83596740	83597740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183154)	promoter-TSS (NM_183154)	-18.0	NM_001359166	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	6.00228684651348	6.12344313256181	6.19730882000834	6.26136059648998	5.92511041077672	5.76391124393089	-0.171874434853104	0.581552887835477	0.873316817586325
Merged-chr9-57645680-4	chr9	57645177	57646177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007783)	promoter-TSS (NM_007783)	-24.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	7.41928090002431	7.10322476234938	7.46037418716953	7.74382024406305	7.30382397226084	7.5758444225551	0.31977650816092	0.218568357447922	0.61273880821229
Merged-chr8-83735375-2	chr8	83734922	83735922	+	962.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	RLTR11C_MM|LTR|ERVK	5889.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.51019975603698	4.56549767096543	4.94048756814545	5.06983615056098	4.80138050674167	4.89977641658419	0.577919681533798	0.16376293347048	0.537798828885102
Merged-chr4-101296489-2	chr4	101296017	101297017	+	674.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31235.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.10718694551246	4.37397219287234	4.57482725716206	4.30112900591933	4.42416165962571	4.52337187337647	0.153991849577386	0.73931527993298	0.934213727972483
Merged-chr9-110621534-2	chr9	110621034	110622034	+	764.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_026012, exon 5 of 5)	exon (NM_026012, exon 5 of 5)	2859.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	2.22165448903974	2.33982949125305	2.3973518442425	2.40096732431318	2.29645573503207	2.65644237219626	0.855001845905217	0.31271413586124	1
Merged-chr10-127561734-6	chr10	127561659	127562659	+	907.075928	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-27600.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.02812737066576	3.05660384993549	3.09671575172832	2.95029757035567	2.9426369151576	2.93103780691893	-0.552324013954328	0.409090378106875	0.782496023117205
Merged-chr2-33139451-2	chr2	33138951	33139951	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-8015.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	2.9799884345901	3.08485028389437	3.24222997289089	2.9858016905587	2.99351351088212	3.36524666966163	0.0747768945933061	0.912150524986865	0.980295639910637
Merged-chr10-86065173-4	chr10	86064672	86065672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-30682.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	4.66280824978426	4.5497637666648	4.93965809027646	5.78200238423353	5.34783625696608	5.37388979388824	1.68681870990193	1.73198160904146e-05	0.000644653685329535
Merged-chr4-147461829-2	chr4	147461329	147462329	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-91448.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	2.14511462672862	2.38222384162331	2.47254195014876	2.41075921577514	2.36443360320812	2.60779831103661	0.779405908174991	0.368525523127134	1
Merged-chr17-86972506-2	chr17	86972006	86973006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9395.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.03670962551339	7.10644437249875	6.58292722037914	7.34871530270112	7.15960897341863	6.87862274061042	0.316241794150356	0.269041506057608	0.666194755066135
Merged-chr3-152340657-1	chr3	152340157	152341157	+	871.0	f1_c57bl6.idr	promoter-TSS (NM_174868)	promoter-TSS (NM_174868)	-250.0	NM_001162375	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	5.05081082505057	4.51722478529846	4.32536909130554	4.37354956647052	4.19414451347009	4.24895701116432	-1.0167393701173	0.0367076733622331	0.235840636640004
Merged-chr2-12406886-4	chr2	12406387	12407387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355537, intron 2 of 13)	intron (NM_001355537, intron 2 of 13)	12573.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	3.77009417427394	3.88342403144465	3.75207763832285	3.91452643667153	3.81069486214542	3.92376410284061	0.234525612556771	0.649189536239041	0.902118776529041
Merged-chr5-97087424-6	chr5	97086914	97087914	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080708, exon 16 of 16)	exon (NM_080708, exon 16 of 16)	24182.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	4.21234824468018	4.03740110985151	3.99936985848269	4.79397502934977	4.42249446842486	4.65976536509856	1.41029162920468	0.00278370943050042	0.0397301705476979
Merged-chr2-29673028-4	chr2	29672534	29673534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	53314.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.67435913339322	5.86567845124895	5.5276884801017	5.24725245319343	5.08395124275854	5.4140563861131	-0.891239039670314	0.00989053276430524	0.0997057729891339
Merged-chr16-78218636-2	chr16	78218136	78219136	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36818.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	6.28653570554377	6.13871234618975	6.28282014221459	6.55779952086872	6.78668225379099	6.21691598402877	0.522931860921934	0.0779266884401717	0.368611422948782
Merged-chr7-88319505-5	chr7	88318937	88319937	+	870.820007	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41352.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.93231387791997	4.9733633362233	5.22608580714738	4.97535920226857	5.22945025647162	5.09655021181553	0.14806699363266	0.693245156500437	0.918849644494702
Merged-chr12-46819514-4	chr12	46819015	46820015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-740.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	4.80032296073	4.68561709321082	4.94764960062325	4.67086274821743	4.75356932871012	4.67863264901647	-0.237492588078843	0.552904157937957	0.861983853430146
Merged-chr16-93711153-4	chr16	93710674	93711674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-733.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	6.01549186386999	5.96314335266511	6.32358787241311	6.17739091825628	5.93024571420957	6.06125614437313	-0.0735996137987164	0.808078682019715	0.954605755203254
Merged-chr19-32646177-4	chr19	32645672	32646672	+	749.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360403, intron 7 of 11)	intron (NM_001360403, intron 7 of 11)	26167.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	4.35888773779351	4.50066520803133	4.30001011254259	4.64000994664498	4.59058572560622	4.50400197315539	0.466274985762902	0.278719338483534	0.676102813729168
Merged-chr6-124742339-2	chr6	124741839	124742839	+	841.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007881)	TTS (NM_007881)	-1260.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	4.89362452795509	4.84011088840997	5.12804325733853	4.77834454439427	4.75980145321987	4.99579289044831	-0.24442416547277	0.532725168111326	0.851971173271146
Merged-chr16-33832846-4	chr16	33832384	33833384	+	861.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	3219.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.96108044741434	6.51438289025053	6.43246572248025	6.61946335661887	6.74705383427201	6.49210895583721	0.493147147964499	0.102182873928636	0.42621511220806
Merged-chr5-99984258-2	chr5	99983758	99984758	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5320.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	5.85783519621951	6.05346126628167	6.10199373885076	5.89101365634095	5.8947300261535	6.0104470885615	-0.131763023048663	0.657500926799261	0.904798742244684
Merged-chr1-106138873-2	chr1	106138365	106139365	+	654.166626	f0_balb.idr|f0_c57.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32659.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	2.70604598666317	2.77842944708441	2.85577235874696	2.75882097143827	2.46295086961956	2.68408863282936	-0.777187376318547	0.313099195778799	0.707746598467115
Merged-chr16-11434451-1	chr16	11433951	11434951	+	708.0	f0_balb.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28803.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.43140478219513	5.64071659937001	5.63616030512329	5.05501242201249	5.33550223565178	5.45253143722594	-0.548677808595682	0.116879300248463	0.456522218235652
Merged-chr9-110888022-4	chr9	110887523	110888523	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7701.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	6.0982837062249	5.57601089130845	5.98286118211538	5.51540937731047	5.40307028237425	5.71471904656809	-0.671089543744207	0.0522890036268364	0.292337795725446
Merged-chr11-97432863-2	chr11	97432363	97433363	+	609.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17297.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.24198067651411	3.47334350454351	3.69303238510763	3.2683494229208	3.4489935670913	3.60280209718771	-1.3855043600105	0.0316959437503708	0.215893589356651
Merged-chr1-120265961-2	chr1	120265461	120266461	+	861.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-681.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	4.44864918694637	4.59220000213127	4.73848773686997	4.61712032051735	4.51974977895436	4.25000078430023	-0.277228767789998	0.531401854779553	0.851584549697133
Merged-chr2-180172347-3	chr2	180171856	180172856	+	877.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019822, intron 2 of 9)	intron (NM_019822, intron 2 of 9)	768.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	6.95090369226441	6.92766156218889	6.74405347725929	6.87458880427204	6.40885476210011	6.7716714327824	-0.295097452849581	0.285284208091778	0.682830755577628
Merged-chr9-118614440-2	chr9	118613940	118614940	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	7731.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.91761378139626	4.92158661109701	5.19620247271527	4.91333335975753	4.59980832369712	4.93214864273828	-0.43343291364631	0.278956596542014	0.676449294675764
Merged-chr17-55944956-3	chr17	55944459	55945459	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	300.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	7.67492264821532	7.71403827071498	7.56452843627102	7.57527083383274	7.70243813846864	7.54232110968154	-0.0630482876476957	0.776308529082415	0.94480820353868
Merged-chr17-69178878-4	chr17	69178349	69179349	+	823.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	19493.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.03809066785564	5.72721386048174	6.19079824967966	5.6914878279357	5.52609630934458	6.2315249019039	-0.270114199312481	0.454451545387155	0.810294301938724
Merged-chr14-87417129-6	chr14	87416655	87417655	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	CpG	572.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	7.0806400210151	7.15786995252612	7.2411394320589	7.15915362346123	6.79729327856897	7.00147845433391	-0.25496456204133	0.311671268404232	0.706631105711982
Merged-chr11-83577231-4	chr11	83576726	83577726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011338, intron 1 of 3)	intron (NM_011338, intron 1 of 3)	1410.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	6.7442986513409	6.61707291974671	6.75263802373093	6.55428321988195	6.49295272307809	6.71957796317244	-0.188427274170279	0.467868887791612	0.818192858816848
Merged-chr2-153263233-4	chr2	153262747	153263747	+	848.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080463, intron 6 of 6)	intron (NM_080463, intron 6 of 6)	21715.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	3.78515548483491	3.66373851005452	3.9247988357344	3.49414661948759	4.05452591152922	4.29480114105803	0.591603278793579	0.31647527795242	0.710557877168509
Merged-chr18-36670321-4	chr18	36669818	36670818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164406)	promoter-TSS (NM_001164406)	-7.0	NM_025291	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	8.72464336609663	8.9062705952688	8.31224643249131	8.64264193533585	8.78567235779602	8.30298742547314	-0.1091750766735	0.672606759665992	0.910938885678047
Merged-chr7-19235229-4	chr7	19234717	19235717	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	ID_B1|SINE|B4	6828.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	4.01710112298875	4.04464160193424	4.3879299795722	4.63655684013497	4.40709737717695	4.18354089237754	0.740874294291231	0.126399621778297	0.475300963888672
Merged-chr9-56507021-2	chr9	56506521	56507521	+	551.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88402.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	3.63882651787053	3.66183784645398	3.84736441310488	3.46506286878656	3.14388765955817	3.67446662054993	-1.00745312745997	0.104190910016472	0.430526753769209
Merged-chr1-151620028-2	chr1	151619528	151620528	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	B1F|SINE|Alu	48655.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.71327850211606	6.26601306428636	6.41600349740253	6.19290029445596	6.41916231879424	6.26041477063978	-0.297834845425501	0.311259826860869	0.706465219571547
Merged-chr3-51184425-2	chr3	51183937	51184937	+	683.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40010.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.63561410360814	6.80088715330133	6.56288539327694	7.23721708318643	7.56272259473376	7.62545549918145	1.22141584494355	2.59729051747013e-06	0.000125575449957963
Merged-chr4-101652983-3	chr4	101652435	101653435	+	715.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	5152.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	6.71450322678192	6.84720192947932	7.10395401340252	6.51474188598214	6.92302574164133	6.80196546470686	-0.201090266040553	0.470171746312434	0.819351047381472
Merged-chr2-20943456-2	chr2	20942956	20943956	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	24265.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	3.25010209914428	3.50415792056807	3.30517917683324	3.27511330456784	2.83299625784381	3.37704924871362	-0.728552316909288	0.302747243648972	0.699380678240475
Merged-chr16-89707673-4	chr16	89707179	89708179	+	926.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110673.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.18664235477588	3.25559084587278	3.4814585687511	3.45659660541729	3.13527218984998	3.55136973734818	0.305035115451897	0.631726073598718	0.895251011359995
Merged-chr7-142373876-3	chr7	142373379	142374379	+	947.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-133.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.45285324120954	3.97829860410367	4.28909853977977	5.85084808306891	5.89120346572188	5.08792189896771	3.16301653235239	4.87445785241377e-11	6.95701353316715e-09
Merged-chr13-110598081-2	chr13	110597581	110598581	+	722.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	203037.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.47283529609531	5.44806439026443	5.116282264359	4.91951096692887	5.21264462528079	4.79244236411218	-0.738716124776688	0.0588225980251703	0.313911668578654
Merged-chr3-98061309-4	chr3	98060859	98061859	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	47821.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.1495189977802	3.93509763929083	4.03786466189847	4.21248870184142	3.84615389012231	4.41250037828204	0.351860751793932	0.496306494649467	0.832976113266569
Merged-chr11-85140172-4	chr11	85139668	85140668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029934)	promoter-TSS (NM_001029934)	-213.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	7.88775106398287	7.61401678637599	7.57307632523342	7.84766007868547	7.86478024528696	7.66810633351434	0.139270547488168	0.549127366002908	0.860215389264136
Merged-chr10-81365859-4	chr10	81365353	81366353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-33.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	6.87766155406199	6.64273229036638	6.29616589043576	6.49747567110521	6.59723732920177	6.41747629078024	-0.204542494328524	0.482375528001481	0.825570196891311
Merged-chr9-44482294-4	chr9	44481799	44482799	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-526.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.72858942891784	4.50190551827015	4.71197932158449	4.95827528698993	4.75627347822992	5.06290841489607	0.629109926348324	0.12108499451719	0.465369063454335
Merged-chr7-80803378-4	chr7	80802852	80803852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016721)	promoter-TSS (NM_016721)	-21.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.81371341392182	7.91059535464646	7.69243286059707	7.51009224103527	7.69688209394454	7.64862772012483	-0.275093640216895	0.218622132534316	0.612741862631882
Merged-chr15-36911366-2	chr15	36910866	36911866	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96036.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	2.75578824407461	2.7517808027514	2.96558655597995	2.87503825631036	2.89563188202893	3.20376199102911	0.829725874490027	0.245615242379508	0.642645689440908
Merged-chr6-72119368-2	chr6	72118868	72119868	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045163)	TTS (NR_045163)	3572.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.05362286867436	5.86945015849326	6.05581412977658	6.03772988096262	6.41046415190427	6.18124090516243	0.400140016382173	0.181762999313061	0.56431236322679
Merged-chr11-120584249-2	chr11	120583775	120584775	+	719.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2655.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	2.94472384539141	3.28843194925105	2.96592355731252	2.9487418466982	2.98404500145014	3.21476693210667	-0.138728032822457	0.841796324264286	0.963002495523594
Merged-chr15-51738796-4	chr15	51738290	51739290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	126671.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.93665387329404	3.99768804348514	4.05849250656809	3.4411436515396	3.31569499419569	4.03777985964668	-1.19786555592348	0.0530838457774449	0.295273790992021
Merged-chr4-10976816-1	chr4	10976316	10977316	+	553.0	f0_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	30803.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.32790160437358	5.1878296783965	5.15753049095122	5.93181702501126	6.09075075614738	5.72178392368812	1.31439104764499	8.08184832366826e-05	0.00236786772998517
Merged-chr18-66467446-1	chr18	66466946	66467946	+	801.0	f0_balb.idr	Intergenic	Lx6|LINE|L1	8842.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.94794635004592	6.83340706072786	6.96683836780356	6.82407140867511	6.96339454946697	6.95685866289831	0.00310753319604111	0.98986864287418	0.997617458187378
Merged-chr10-127287187-2	chr10	127286687	127287687	+	987.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 3 of 12)	intron (NM_001347171, intron 3 of 12)	1831.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	3.60280526223505	3.31860666701455	3.7430460228508	3.53664159842744	3.43281847651464	3.714259731263	-0.000476628423805135	0.999359223546677	0.999920050950963
Merged-chr5-140382854-4	chr5	140382346	140383346	+	914.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	6462.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	5.28727725052067	5.38774242073954	5.23918717570165	5.11510810847347	4.80546719535246	5.39310809301436	-0.405846306534768	0.290057713622757	0.687733205116261
Merged-chr10-117883736-4	chr10	117883235	117884235	+	922.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-37761.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	4.97351193894672	4.7204863794895	4.793684415059	4.47792735656844	4.60061625361431	4.82186690149971	-0.469767878567487	0.255763817748709	0.652762828432113
Merged-chr11-34049578-2	chr11	34049078	34050078	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2650.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.60024446632315	6.40732418233762	6.55995778712002	6.94088716590659	6.75602374049349	6.85572887536788	0.516606412290878	0.0454739747908858	0.269271170964989
Merged-chr4-3789408-2	chr4	3788908	3789908	+	646.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B4|SINE|B4	46247.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.90473737936373	3.07825869896998	3.33653350966128	3.02606945225888	3.17558712328828	3.07411028393069	-0.0701121754810599	0.917946565419829	0.981747877135909
Merged-chr19-47399177-4	chr19	47398676	47399676	+	957.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	65235.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.82223860136229	5.7497746135945	5.25039609473076	5.58169151232265	5.26793693399665	5.13433647103422	-0.564505764078839	0.133827069552735	0.489097037875759
Merged-chr1-120519635-4	chr1	120519133	120520133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14609.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.17327844712036	3.70851393172168	3.75056216713217	4.74485358359502	4.31769827261853	4.34321181051342	1.6092122397647	0.00304724980794693	0.0425857510950031
Merged-chr14-120306414-4	chr14	120305925	120306925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360376)	promoter-TSS (NM_001360376)	-27.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.58175775247669	4.69005407842364	4.6986836638406	4.96509005473696	4.77078876881846	4.87828898263989	0.496313581072149	0.21056743233236	0.60275543241747
Merged-chr16-33879707-3	chr16	33879181	33880181	+	852.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 4 of 14)	L1MEd|LINE|L1	50016.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.69391897260705	5.05439579323911	4.75120055181795	4.87790872736514	4.21938721774341	4.73959532481738	-0.484014002775021	0.296247290831959	0.693022144754045
Merged-chr13-58126362-4	chr13	58125847	58126847	+	835.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029872, exon 1 of 1)	3' UTR (NM_029872, exon 1 of 1)	2209.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	4.50596462628732	4.42915371006433	4.36099263224815	4.15271508448957	4.21980361487372	4.15056719204166	-0.692768319177108	0.125571973517646	0.474177845108014
Merged-chr18-75005754-4	chr18	75005234	75006234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001181)	promoter-TSS (NM_001001181)	-105.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	7.86480870413588	8.35676857230789	7.89511694630581	8.06235897940522	8.23375956191025	8.09443780026634	0.096905165018421	0.693585306987865	0.918960880648635
Merged-chr11-74983477-2	chr11	74982977	74983977	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	57605.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.1874298394123	2.88476838637765	3.08713567780755	3.13805436661912	3.00963769376462	3.48408342783864	0.683866601136932	0.322547062931096	0.715978413663286
Merged-chr11-75165525-4	chr11	75165019	75166019	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2633.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.7474607626525	5.70578928690871	5.80130759717119	5.52652388580219	5.50818910487622	5.65885599689598	-0.350402393031979	0.263815416717189	0.661810760550104
Merged-chr9-82970516-2	chr9	82970016	82971016	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	MTD|LTR|ERVL-MaLR	4973.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	2.62871625964487	2.4220505227497	2.59169560210277	2.67923794708064	2.6160403131328	2.72790914525551	0.703057548198653	0.362194742080767	1
Merged-chr13-96559337-2	chr13	96558837	96559837	+	771.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 2 of 17)	intron (NM_023420, intron 2 of 17)	16602.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	3.20123780934913	3.24956518886376	3.30553835786503	3.33778896004255	3.03168118431465	3.02076250463788	-0.470932937025694	0.472207090546751	0.8205191831757
Merged-chr3-79628887-4	chr3	79628406	79629406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029482)	promoter-TSS (NM_029482)	-139.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	6.90198968198758	6.96757241814017	6.61888455775617	6.80109441011182	6.72206015314694	6.47734649592661	-0.258580084844656	0.339733442845867	0.729397455488285
Merged-chr5-99229621-3	chr5	99229114	99230114	+	747.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 8 of 13)	MER58B|DNA|hAT-Charlie	23313.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.66940414273596	4.76287363458377	4.92997653049143	4.59912920101204	4.76680891168294	4.95991892885213	-0.017013398637923	0.966634698364259	0.992349609766636
Merged-chr11-83473070-4	chr11	83472613	83473613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	5.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	7.02685026091124	6.87937670198428	6.95012093482922	7.12288639020337	7.26603922092854	7.07575523206108	0.317793498718406	0.187917807157339	0.573260921614161
Merged-chr6-97441648-4	chr6	97441134	97442134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	17652.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.87030017635603	7.9745431868989	7.6207890396805	7.91580171876492	8.04666047207027	7.54650701593813	0.0372699719335217	0.882636077169765	0.97322373493158
Merged-chr10-81405682-4	chr10	81405173	81406173	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3902.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.75787704210507	5.54161260195248	5.51585244732967	5.50503003258117	5.65864220405563	5.68926572834395	0.00795831782911608	0.980440691761506	0.995512982807197
Merged-chr17-81575459-2	chr17	81574959	81575959	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	162928.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.80074749293783	4.62073057321726	4.8082198621279	4.6370751973744	4.76034112595296	4.55527156915857	-0.189131412394964	0.643755425625744	0.899990653857957
Merged-chr10-62590367-4	chr10	62589855	62590855	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 7 of 14)	intron (NM_019553, intron 7 of 14)	-11898.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	3.52509759207073	3.38291018026993	3.39728603483523	3.51150329918498	3.53922757037682	3.78243748508408	0.621594562695969	0.28362896230338	0.681376161050487
Merged-chr13-23684094-4	chr13	23683604	23684604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	-95.0	NM_001290380	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	7.29942090728089	7.37378005527874	7.53016105113062	7.07941545676183	7.1554043679749	7.20628039321053	-0.377420375752704	0.107729421875513	0.438442148956602
Merged-chr7-83396399-3	chr7	83395911	83396911	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-188520.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	2.76202308101389	2.91850329759108	2.67915164877613	3.23456492724619	2.98445887991437	3.1928549529367	1.64289891710434	0.0274153564774104	0.197367795619689
Merged-chr17-34364839-4	chr17	34364349	34365349	+	960.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 6 of 8)	intron (NM_079835, intron 6 of 8)	10027.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	6.41735172013491	6.24478765876908	6.06836692246081	6.63378389075663	7.00527801957587	6.3105926010999	0.703561351591273	0.0257847833142062	0.190417216284609
Merged-chr1-150015556-3	chr1	150015072	150016072	+	735.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-54282.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.24826765625057	4.26921146337816	4.38150380260773	4.4459280365262	4.16608058099565	4.48959467544874	0.182549174111239	0.689628973963426	0.917435635731004
Merged-chr14-54388990-3	chr14	54388491	54389491	+	582.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L2|LINE|L2	20481.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	4.75825139503247	4.69599950693232	4.82397033097571	4.08953190555133	3.86402812681486	4.09472641054912	-2.02424367779231	1.4934039632131e-05	0.000565861370542058
Merged-chr17-25272611-2	chr17	25272111	25273111	+	804.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177609, exon 2 of 8)	5' UTR (NM_001177609, exon 2 of 8)	820.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	6.62214014428193	7.22474009705123	6.74786035330468	6.6910082334626	6.82617694308557	6.62508804712902	-0.277433660175398	0.343457576588683	0.73236681955797
Merged-chr10-94515040-5	chr10	94514554	94515554	+	941.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172051, exon 1 of 4)	exon (NM_172051, exon 1 of 4)	197.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.11142970217953	7.09191038501678	6.85380593231803	6.62018601590304	6.6455174232731	6.45636960330459	-0.695798512062241	0.00698385215988586	0.0779911918560976
Merged-chr1-162739487-4	chr1	162738987	162739987	+	929.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	intron (NM_001081290, intron 1 of 34)	1069.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	6.85346863968684	7.03972330892729	6.83509157405271	6.86936587235206	7.28909431997131	7.22286648629634	0.3427349008098	0.192426782522015	0.579495031490836
Merged-chr10-21998909-6	chr10	21998420	21999420	+	798.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001161850, exon 12 of 12)	3' UTR (NM_001161850, exon 12 of 12)	4254.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.42958127482077	5.04160014477542	4.92435736859714	5.32893146334014	5.18451097622257	5.36777080745862	0.262547730173283	0.489810223521005	0.829928506123967
Merged-chr8-121577945-4	chr8	121577431	121578431	+	787.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133765, intron 1 of 8)	intron (NM_133765, intron 1 of 8)	875.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	4.37824043179149	4.1946511323339	3.93435791008741	4.34814894036014	3.77686709714394	4.42596008235982	0.0652511179612862	0.904834444079184	0.978165789675139
Merged-chr9-55255869-4	chr9	55255358	55256358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	27767.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	7.13890238834543	7.25281027319067	7.10754103653787	6.87077930498519	7.08241034285782	6.68088988060885	-0.40921531531224	0.111460432169279	0.445975007096497
Merged-chr14-47377145-4	chr14	47376619	47377619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145953, intron 1 of 5)	MIRc|SINE|MIR	3259.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.45805955029993	6.76504590719966	6.56787761401486	6.47923353673024	6.80246662291133	6.14630268091651	-0.136227670830144	0.658601215760378	0.905014667687917
Merged-chr17-66096920-4	chr17	66096434	66097434	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	4625.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	5.0062464516889	5.13697870286864	5.30053617510493	4.99305219050403	5.11103356347309	5.36249587980309	0.0218986053376355	0.95311220229904	0.989359300570295
Merged-chr2-25620879-2	chr2	25620379	25621379	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040130, intron 4 of 4)	intron (NM_001040130, intron 4 of 4)	1123.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	5.55807459461614	5.96437623946543	5.83473423272642	5.53558639719051	5.50663741950657	5.6689006276796	-0.424680369722922	0.197378905102576	0.585362082039247
Merged-chr5-122547534-4	chr5	122547000	122548000	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45275.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	5.53390954761361	5.48684955400153	5.41958813151957	4.52244534930668	4.58561126724887	4.49394575128918	-2.06295900119418	1.27885993639975e-07	8.89757423993557e-06
Merged-chr8-82863873-4	chr8	82863363	82864363	+	998.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177378, exon 1 of 7)	5' UTR (NM_177378, exon 1 of 7)	507.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.83625747856235	6.59187576659948	6.76840304654403	6.53840651854229	6.27263281454576	6.44555912015338	-0.505810952152161	0.0615331808296475	0.321833736279673
Merged-chr16-4560765-4	chr16	4560258	4561258	+	960.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1038.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	4.63273706686448	4.88677641986072	4.81197678158652	4.39522902533005	4.66761638629703	4.47518729442903	-0.604854924526222	0.155289507026613	0.524873107662021
Merged-chr11-58977468-3	chr11	58976964	58977964	+	827.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-629.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	6.29050471908662	6.63057276372753	6.73036482400427	6.60366881551816	6.70497873959554	6.35580590479954	0.0223137602158298	0.938522835065104	0.98646617225124
Merged-chr18-5840130-3	chr18	5839624	5840624	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247477.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.81705783239307	2.74236735322087	2.75884214760436	2.8390536163241	2.79488593645262	2.89312151874073	0.341988298025921	0.629078338158341	0.894026377247762
Merged-chr4-147526829-2	chr4	147526329	147527329	+	879.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26448.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.76799417824581	3.90458640457009	3.9517104416451	3.52628145259821	3.78999440548518	4.10893956837777	-0.161859531387946	0.771376794499555	0.943614978016208
Merged-chr14-18263659-1	chr14	18263159	18264159	+	580.0	f0_balb.idr	Intergenic	Intergenic	7322.0	NM_001359897	66480.0	Mm.2050	NM_025586	ENSMUSG00000012405	Rpl15	2510008H07Rik	ribosomal protein L15	protein-coding	3.28118686855567	3.31387471549508	3.21756622209351	3.01738324872599	2.82411062370649	3.23281062552766	-1.09976891085551	0.108635435130627	0.440348058957154
Merged-chr12-79842370-2	chr12	79841870	79842870	+	748.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82363.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.79729558075421	3.85168758031495	4.2307002423567	4.21498093633631	3.64927664649542	3.83105139289351	-0.140286744307512	0.803513805802943	0.953504424667369
Merged-chr9-65215139-4	chr9	65214624	65215624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177460, intron 1 of 6)	intron (NM_177460, intron 1 of 6)	434.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	6.88257234832228	7.21605974820507	7.16872826682935	6.55719560364725	6.51280541445416	6.69647534223151	-0.793274131976983	0.00240553078619373	0.0356155526081153
Merged-chr9-66916605-4	chr9	66916092	66917092	+	820.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	AmnSINE1|SINE|Deu	3113.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.67227196151856	5.21891837128891	5.89054955587966	5.76019615285502	5.76421711543516	6.15962544814436	0.519122262759502	0.154303242202088	0.523602796670256
Merged-chr4-43728743-3	chr4	43728262	43729262	+	858.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027511)	TTS (NM_027511)	-1272.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	3.37450342794523	3.57816977066302	3.66333171555876	3.10073655832186	3.1388833568709	3.48068938914266	-1.17491307920483	0.066373855269759	0.336476923153819
Merged-chr19-36926857-3	chr19	36926370	36927370	+	877.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	791.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	8.11846747269337	8.6232531078901	8.13714441320997	9.10442476608831	9.30284870527162	8.70509276767588	1.0255407005657	0.000122605420956836	0.00336802636744021
Merged-chr10-78476972-4	chr10	78476490	78477490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12042.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	6.17258859303326	6.20354172914389	5.94856944338472	5.56053018420126	5.60361694488433	5.42998650246396	-1.03599669968265	0.000894262270368742	0.0165208203802936
Merged-chr4-141157633-4	chr4	141157041	141158041	+	960.3273929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	B1F|SINE|Alu	9619.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.51060984864007	6.5311398107055	6.30571375416884	6.72016804187698	6.75331123669752	6.64335201258416	0.395503952537474	0.131509680358318	0.484831966471198
Merged-chr16-25038710-4	chr16	25038217	25039217	+	894.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20922.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.9175721010989	3.94228004519981	3.67268192961132	3.75340641143849	3.62490420687629	3.94845915608936	-0.266225956903075	0.62316474164695	0.891297625063953
Merged-chr19-46511436-4	chr19	46510936	46511936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9788.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.27963247958171	8.04082419398166	7.61020922159634	8.00852912967674	8.15898685127965	7.75300526516782	-0.0346680627815631	0.897493924220069	0.976038718717371
Merged-chr14-56778449-4	chr14	56778012	56779012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360420)	promoter-TSS (NM_001360420)	-194.0	NM_025682	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	7.1248111811603	7.20298719730293	7.31045456205822	7.14769956108478	7.273317937286	7.37825843478254	0.0840301330010669	0.722786084779865	0.928947689973901
Merged-chr15-81107053-1	chr15	81106553	81107553	+	1000.0	f1_balb.idr	intron (NM_001082536, intron 2 of 13)	MT2B1|LTR|ERVL	-2006.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.36369951334059	3.95526738104532	4.15363933644565	4.00424727264662	4.11496951027284	4.17571638724028	-0.2013191605151	0.683231663956327	0.915287549820938
Merged-chr2-26974159-4	chr2	26973660	26974660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	744.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	6.46128674051854	5.8845474338225	5.75016904647556	6.11716108610373	6.24358900895302	6.08969079109844	0.121759029509928	0.719873633250417	0.927960661644538
Merged-chr8-19980011-4	chr8	19979508	19980508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	CpG	250432.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	4.97630330601082	4.76972177579945	5.12865555547195	4.35937492492592	4.05064076552666	4.2875140832127	-1.81505388334085	5.42154230664105e-05	0.00168893931954694
Merged-chr10-78095319-4	chr10	78094815	78095815	+	895.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25947.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	3.68385744221273	3.33422447005539	3.83186232553882	3.53989049867341	3.72114717383691	3.9461749523092	0.38303485794374	0.519083917522133	0.845629761325035
Merged-chr5-77172682-3	chr5	77172183	77173183	+	898.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38522.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	2.78822582265031	2.79502509382001	2.93885869900184	3.4540279356811	3.41913718493255	3.26035558726843	2.66909634576273	0.000240688806732122	0.00581342067650693
Merged-chr11-105369059-4	chr11	105368541	105369541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172568, intron 10 of 11)	intron (NM_172568, intron 10 of 11)	76395.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	3.44759435691556	3.43012766774295	3.31524724623174	3.33875106516812	3.19182117359729	3.32970725751507	-0.469619624103366	0.438380909966102	0.800509113096307
Merged-chr14-26638031-4	chr14	26637529	26638529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-105.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	8.61494092552476	8.85029841649012	8.36532517482151	8.43181865840443	8.80807429723887	8.19980113944372	-0.162437206427696	0.534707807066399	0.853068627162717
Merged-chr2-167335299-4	chr2	167334807	167335807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13871.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.12951026747111	7.23490839423124	7.29331330825007	6.88814879120282	7.13596610047793	6.90868297888554	-0.344436037979574	0.161510646758423	0.534459252156486
Merged-chr1-133012504-1	chr1	133012004	133013004	+	925.5	f0_balb.idr	intron (NM_008575, intron 4 of 11)	intron (NM_008575, intron 4 of 11)	12912.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	2.16993490594281	2.20210809383115	2.39706244325385	2.22448066805887	2.07268584080948	2.01175499746908	-1.11205506695824	0.23346485714431	1
Merged-chr7-80027798-2	chr7	80027298	80028298	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	1570.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.15520585016138	6.39738398022765	6.60382913896618	6.38743561054088	6.37794537310609	6.40572418404088	0.000710003608938584	0.998007646134627	0.999579683478894
Merged-chr4-122892351-4	chr4	122891820	122892820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6244.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	6.45808275045869	6.5910833601185	6.7784624655308	6.45119462017072	6.85123023809811	7.14613178019456	0.36395111731761	0.226431155784734	0.62138719831753
Merged-chr11-97632151-4	chr11	97631656	97632656	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	3.58230573402863	3.39550101182607	3.38198159861816	3.27767895328175	3.47216308987661	3.45338195499791	-0.204319003607083	0.732287597156885	0.931723932448277
Merged-chr1-39493831-4	chr1	39493329	39494329	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-15074.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	6.2614369190283	5.46357017805474	5.9070599869514	6.30358727509813	5.85949890505519	6.08365909219259	0.293853946580032	0.421234168494817	0.790198680947712
Merged-chr17-47743208-2	chr17	47742701	47743701	+	955.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B3|SINE|B2	5270.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.36807278114579	3.30405997736608	3.28401281896438	3.12850999397877	3.00581146725191	3.29940129022663	-0.75567381552545	0.237202172286539	0.633635697827165
Merged-chr1-172331775-4	chr1	172331269	172332269	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	4.960190145597	4.97935971827079	4.8805882363083	4.67556483552323	4.44634590097562	4.94543677008333	-0.578814623178906	0.160761577839069	0.533494234902646
Merged-chr19-41088481-4	chr19	41087989	41088989	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-11376.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	3.03170716358621	3.05299236172255	3.28123950720211	3.33128355880989	3.15433741169975	3.51000904522032	0.885801882601655	0.172505546391153	0.551095811415
Merged-chr13-91093363-3	chr13	91092868	91093868	+	753.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130619.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	3.87498618052963	4.12216482804977	3.88372032773771	3.82835137456665	3.60549721531737	3.57346276958876	-0.950524679513069	0.0809685556807958	0.376549943052071
Merged-chr19-59024791-4	chr19	59024292	59025292	+	695.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 8 of 16)	ID_B1|SINE|B4	51277.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.76776540959292	4.9985967077265	4.71948195085396	4.96509483483755	5.69256566421487	4.91218621217787	0.877818003294699	0.0472844982212355	0.275433047684817
Merged-chr11-51818433-4	chr11	51817909	51818909	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39072.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	6.4744426090871	6.45033754229953	6.40268227832616	6.61561335830437	6.53982123609465	6.38549495545017	0.12511214343253	0.636838370475228	0.89723915288953
Merged-chr17-47883305-3	chr17	47882816	47883816	+	962.4111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 3 of 16)	intron (NM_028767, intron 3 of 16)	41316.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	2.73376903050412	2.73587693550248	2.96879614576621	2.29085233571565	2.31950726742697	2.43213230956804	-3.35150852586191	0.000784457457766888	1
Merged-chr11-115824040-4	chr11	115823563	115824563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145438)	promoter-TSS (NM_145438)	5.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	4.36233354604953	4.27266024432869	4.40305601534048	4.14261439859297	3.96303210621968	3.95944938513105	-0.898431938881199	0.05853770629221	0.31293321330949
Merged-chr9-63021948-2	chr9	63021448	63022448	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41069.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.19858140435317	2.67829973668614	3.07409912641339	2.72342504446899	2.75776247816779	2.97317492575236	-0.881225201070591	0.247519285061817	0.644478038346017
Merged-chr18-32359308-7	chr18	32358791	32359791	+	998.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045403, exon 3 of 3)	non-coding (NR_045403, exon 3 of 3)	-17926.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.46138553957748	5.36069155082792	5.61022068168507	5.6669739017869	5.74715253045269	5.61802219464979	0.395377054344566	0.220661158243112	0.615219256211797
Merged-chr5-24841199-3	chr5	24840648	24841648	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	1213.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	4.22094213350148	4.09712145234805	4.21660039413386	4.56927290585585	4.38211346861809	4.23841369644508	0.616974724328423	0.179432604073112	0.560971531728926
Merged-chr5-74471967-4	chr5	74471465	74472465	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 3 of 8)	intron (NM_001114660, intron 3 of 8)	59777.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	3.28497518624624	3.31125309249399	3.37295514810515	3.25884552822747	3.50813162379821	3.33163768217891	0.216167170219851	0.721961201865626	0.928606209603791
Merged-chr14-79549635-4	chr14	79549137	79550137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	33963.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	7.43281947072207	7.43766338433058	7.03342328874524	7.34540266313591	7.39576023623484	7.27096108749211	0.0239829509821892	0.92315702988836	0.982693984177635
Merged-chr3-116595367-1	chr3	116594867	116595867	+	1000.0	f1_balb.idr	promoter-TSS (NR_152258)	promoter-TSS (NR_152258)	409.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	6.13796540870316	6.34221055171491	6.10617447965729	6.3798354653575	6.62124627864589	6.62336471843781	0.556916360038829	0.0473837031320484	0.275694229089678
Merged-chr7-31007942-3	chr7	31007434	31008434	+	875.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26013.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	4.04030095426141	3.87096156287107	4.3538136242367	3.91569965761209	3.76080024099578	4.03578268911048	-0.575243018638675	0.273193202466682	0.670457454382767
Merged-chr11-69095113-4	chr11	69094589	69095589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3860.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.3591900719595	8.37166542119296	8.02962799819518	8.03205000809862	8.50387954704467	8.02512841969859	-0.0734593084704119	0.771610331078804	0.943614978016208
Merged-chr19-26748331-4	chr19	26747824	26748824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026003)	promoter-TSS (NM_026003)	-79.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	6.25757912505017	6.48295765917106	6.60483693197728	6.76965223086164	6.81199111814999	6.59673142339165	0.456093177554821	0.0923142025998567	0.404737931465454
Merged-chr1-86433351-2	chr1	86432851	86433851	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	7022.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	5.02929709232268	5.20174911909011	5.12807416828715	4.49419755955909	4.83930819466095	5.34103067392356	-0.409531909168994	0.34826150147171	0.736107144694558
Merged-chr3-60496501-2	chr3	60496001	60497001	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	-4678.0	NM_001253710	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.90671769768693	4.40254168558324	4.06432957090454	4.3304247666525	4.50388327427219	4.49726617254475	0.785781602324919	0.110098726216605	0.443374081115101
Merged-chr15-78983553-4	chr15	78983059	78984059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	503.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	6.3841919185579	6.6083410342548	6.35700116568597	6.73954143198442	6.6567662695342	6.29417168665454	0.203696793690411	0.476429731222678	0.82257619929543
Merged-chr7-101384664-4	chr7	101384160	101385160	+	987.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-866.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.06540655802007	7.94740265901495	7.91548194217004	7.9619099771082	8.34273098000287	7.76075523894547	0.107616347067896	0.665995584035938	0.907955574867489
Merged-chr8-116268078-3	chr8	116267568	116268568	+	976.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-236947.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	3.43254651064932	3.74806993100191	4.1027215306533	4.30055211525923	4.60814693168554	4.12515459005164	1.71065238556629	0.00303991759272654	0.0425118425303513
Merged-chr12-102252734-4	chr12	102252234	102253234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-30340.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.38232466963628	3.65886986715374	3.3011046066162	3.20050325380924	3.27310066218109	3.12958282211521	-1.01845382023092	0.112358614498548	0.447687566666004
Merged-chr1-180942402-4	chr1	180941876	180942876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144794)	promoter-TSS (NM_144794)	-142.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	7.83826322455219	8.02478184385557	7.43475906800967	7.87272194201332	7.89263761092531	7.51351594350253	-0.0296131610142696	0.91135161886	0.980089251983496
Merged-chr13-67399772-4	chr13	67399268	67400268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080941)	promoter-TSS (NM_001080941)	-1.0	NM_001080941	72807.0	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	6.51323714664379	6.44176930734071	6.36970796604119	6.79515462833087	6.69348113515761	6.69493228196187	0.448840459926293	0.0819409511468475	0.378680514469697
Merged-chr7-4943421-4	chr7	4942897	4943897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173008, intron 13 of 13)	intron (NM_173008, intron 13 of 13)	17553.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	3.19707217216198	3.44854711298595	3.28751231782683	3.493956543961	3.36664309442844	3.04850134043314	0.015396235509462	0.981357769121873	0.995697792113651
Merged-chr11-32221802-11	chr11	32221217	32222217	+	934.7727050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010117, intron 1 of 17)	CpG	576.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	4.42324719409179	4.36346830077578	4.28465482309086	4.11057685378844	3.5910579734432	4.3522664474349	-0.862496343890897	0.11622403624849	0.455137876890266
Merged-chr4-3781297-4	chr4	3781002	3782002	+	818.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 11 of 12)	intron (NM_001111096, intron 11 of 12)	54153.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.95481584623926	2.74619677199785	3.13125783884378	2.82328647980131	2.66714291169703	3.09289038468326	-0.39379441162803	0.597604524887369	0.880433364120803
Merged-chr10-44657630-4	chr10	44656980	44657980	+	795.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER121|DNA|TcMar?	-198732.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.93839346251475	6.00879265653292	6.0460374473139	5.84581860518898	5.83541861735535	5.94891251693592	-0.216125539090143	0.461275017903765	0.814992635038861
Merged-chr8-121580627-4	chr8	121580138	121581138	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	4.65790700835777	4.511596387714	4.15232729837578	4.254279097231	4.21145220292639	4.69554870807851	-0.176666116166717	0.718206244087241	0.927293456311605
Merged-chr15-59743073-4	chr15	59742563	59743563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51896.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.45634155929302	5.78612048093917	6.11453241188268	6.02123565425681	5.71149891164397	5.87563186342704	-0.482273803985662	0.1563485902657	0.526826496267448
Merged-chr13-67269123-4	chr13	67268640	67269640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-72.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	7.10488533785281	7.53479959003504	7.06336266263358	7.11941643171563	7.22419652430299	7.02633832970312	-0.19533928211744	0.461346588737759	0.814992635038861
Merged-chr10-41978591-3	chr10	41978092	41979092	+	631.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 6 of 17)	intron (NM_001034858, intron 6 of 17)	39790.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.21259565762157	4.57863325401349	4.15934885100115	4.29386425837058	4.07584669873949	4.32150522039916	-0.297746106042887	0.537135809692765	0.854311531235259
Merged-chr8-69081631-4	chr8	69081135	69082135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-7101.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.00427479564546	4.83979943580062	5.14411155728805	4.87233691070953	4.96605234151448	4.7418929486457	-0.267454960548994	0.492656212317704	0.831177181177099
Merged-chr13-12565776-4	chr13	12565274	12566274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026184)	promoter-TSS (NM_026184)	-109.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	6.51594477659607	6.66151788234157	6.35397931724654	6.30242170252619	6.65590250499544	6.22724182921749	-0.162564423620954	0.579642492733555	0.872572319921262
Merged-chr17-84361154-4	chr17	84360654	84361654	+	982.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	105054.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	3.85413517123563	3.43486540349003	3.83383364369559	3.76992455399003	3.60500826088818	3.59213429578029	-0.201654468419192	0.72575312450781	0.929707128236285
Merged-chr5-138280981-2	chr5	138280481	138281481	+	899.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016964, intron 1 of 33)	intron (NM_016964, intron 1 of 33)	472.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	3.13904272692933	3.13183915485551	3.33249102904015	2.82678930921135	2.79728775730577	2.95322780938032	-1.66779787263175	0.0179585290514283	0.150534496961664
Merged-chr5-76140479-5	chr5	76139967	76140967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020611, exon 1 of 6)	exon (NM_020611, exon 1 of 6)	194.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	7.96000178632722	8.13639786198786	8.01567627894129	7.88992357917096	8.1921094239551	7.87045804440141	-0.0580038415665886	0.798731310567887	0.952063885260145
Merged-chr13-63253365-4	chr13	63252855	63253855	+	974.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	13326.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.57405709643379	6.86529396482294	6.33769064218049	6.13841121313209	6.00521475930235	5.75249602205167	-1.05325370627658	0.000727311223251103	0.0140739795963437
Merged-chr19-46522073-4	chr19	46521571	46522571	+	949.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20423.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.66670683431309	7.199158932125	7.39129491025954	7.6708530273664	7.77296205341898	7.14692503073063	0.193096563061022	0.495861559221775	0.832771190225561
Merged-chr2-51931407-2	chr2	51930907	51931907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355608, intron 1 of 3)	intron (NM_001355608, intron 1 of 3)	1928.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	2.98603989176445	3.03791848008808	3.28291708260171	3.16037055098474	3.19944691510518	3.29927644198644	0.504739558256658	0.436282580508271	0.799472869647494
Merged-chr3-27193518-3	chr3	27192967	27193967	+	976.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	10463.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.74503361652327	9.2029998592501	8.60215625403928	8.53997055338391	9.08267626793931	8.47066996909473	-0.200485797333604	0.472465609466773	0.820550293768681
Merged-chr19-40687528-7	chr19	40687126	40688126	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	27856.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.50763217188798	5.10472809085555	5.29075611814359	5.92756214384571	5.69805863468106	5.3558395161028	0.713443262323525	0.0518125513586563	0.290571734889923
Merged-chr8-123443076-4	chr8	123442561	123443561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281803)	promoter-TSS (NM_001281803)	105.0	NM_054046	23854.0	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	6.37974921370681	6.28206135023438	6.2179173920876	6.09042272552464	6.26568494377029	6.12864255807547	-0.216779288074653	0.439004022926898	0.800937323779458
Merged-chr11-34002400-4	chr11	34001892	34002892	+	775.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-9199.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	4.21665709344539	3.95465451389465	4.38059078538994	4.28221031121166	4.09205467779439	4.32151118606351	0.117982073743399	0.807975540176743	0.954583809755663
Merged-chr7-90476085-4	chr7	90475589	90476589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-94.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	6.64373895070486	6.91648850982006	6.62639821772395	6.47676129459112	6.64293386281753	6.05454126934083	-0.493150291037678	0.102737018956175	0.427440042379732
Merged-chr2-11192947-4	chr2	11192437	11193437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20555.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	7.78992972746795	8.05084741581987	7.84216427850055	8.00214403364744	8.44108520959601	7.68417245382663	0.269414875882311	0.324614533175236	0.717544999689449
Merged-chr8-47917867-4	chr8	47917370	47918370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	72681.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	3.10426394917264	2.96257718517881	3.37080731597271	3.18664410275726	3.11757453105142	3.10863380014003	-0.0467014698692144	0.943860362577946	0.987495247303971
Merged-chr18-49755622-4	chr18	49755107	49756107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-6.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	7.66883709423221	7.63154876086614	7.45397613349626	7.70864432583334	7.61855314773126	7.50048701543557	0.0316759331385043	0.889059927801637	0.974207858658472
Merged-chr18-23646846-2	chr18	23646346	23647346	+	769.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361215, intron 16 of 19)	intron (NM_001361215, intron 16 of 19)	105459.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	2.52788710260832	2.73011766992154	2.77560380647294	2.33060059167999	2.7148103873899	2.60410440979058	-0.657256968828501	0.439521660557219	1
Merged-chr8-90840255-4	chr8	90839743	90840743	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	MamRep605|LTR?|LTR?	11408.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.12498604232084	4.94286765255772	5.06749944943316	5.43427616064464	4.91706737432469	5.32549335692052	0.393872783533532	0.309496205211317	0.705085977527743
Merged-chr3-81123651-4	chr3	81123157	81124157	+	903.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	87241.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.91286194507201	4.88798937314418	4.6595547810193	4.93210487345262	5.14512166747619	4.88924134569174	0.369459356038973	0.346284705050257	0.734546534574169
Merged-chr18-75902132-2	chr18	75901663	75902663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81985.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.58305967871273	4.39781238181634	4.51897927278181	5.7627530006204	5.64936352490291	5.13060381108013	2.26035217619589	3.50715279233751e-08	2.82227436697118e-06
Merged-chr14-66242472-1	chr14	66241972	66242972	+	781.0	f0_balb.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28648.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.22751177947961	6.28640159518167	6.41017015966668	6.48018165018056	6.72827932729215	6.57517002154869	0.48855324401388	0.0711318912554571	0.349837375442467
Merged-chr15-36282111-3	chr15	36281600	36282600	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357631, intron 1 of 7)	intron (NM_001357631, intron 1 of 7)	1047.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	5.4290851024227	5.68258641365457	5.4163566409815	5.25200441294021	5.35875578009773	5.72376510351714	-0.136502811320612	0.700539734526271	0.920919335036368
Merged-chr15-76343499-4	chr15	76342965	76343965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025567)	promoter-TSS (NM_025567)	-58.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	6.0437381185385	5.79366366563613	6.0571486908899	6.03488972941607	5.87626899147906	5.96005732776895	-0.0162389916488695	0.956999427780921	0.989887454023164
Merged-chr6-39242324-2	chr6	39241824	39242824	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35551.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.1910410132245	6.03572726759896	5.5151906144214	5.95839837634697	6.32865069631592	5.87071251956101	0.207200689126777	0.557511620061126	0.864250916545731
Merged-chr6-113750282-4	chr6	113749846	113750846	+	964.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-9665.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	5.91480516043266	6.24825130095835	6.57604464459935	6.55935195245379	6.77550385555452	6.53467496841615	0.599351480231432	0.0519751961894892	0.291111478495895
Merged-chr13-54209635-4	chr13	54209164	54210164	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	17531.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	5.2329499331897	5.03294301243644	4.96496432974102	5.73536249911398	5.58152383410081	5.61420264490921	1.08757591904659	0.00177303349257157	0.0281493170864139
Merged-chr7-145122694-4	chr7	145122226	145123226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85393.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	5.32589867100854	4.9919533594351	4.7604406207251	4.57178716378181	4.24416544170063	4.53140780648349	-1.41737524999827	0.00125883634719177	0.021543655857082
Merged-chr2-61713392-2	chr2	61712892	61713892	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 1 of 11)	PB1D7|SINE|Alu	1698.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	3.00415147430971	2.67786181081602	3.00966470575596	2.99161970752858	2.83501426774016	2.84049474449251	-0.0624764339228615	0.931400852414426	0.984877393921712
Merged-chr13-31225667-3	chr13	31225164	31226164	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045957, intron 1 of 2)	L1MA5A|LINE|L1	15422.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	5.76199242434865	6.22358798623598	5.82984824418526	5.57144704208587	5.67772533295171	5.22815002842972	-0.79988027559817	0.0243241286805226	0.18363079107517
Merged-chr1-151598043-4	chr1	151597533	151598533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L3|LINE|CR1	26660.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.44863262213332	7.47452006226109	7.10904128178475	7.1541777093521	7.48148375051808	7.16683090288979	-0.115479756479029	0.655002782452586	0.904048560566546
Merged-chr13-42537467-2	chr13	42536967	42537967	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143332.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.07350859382836	2.68080012681129	2.55412635482555	2.79788705970883	2.74611828037003	3.01219993633956	0.307738104014943	0.70311847547084	0.922108924938678
Merged-chr7-88250579-4	chr7	88250083	88251083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-27502.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.1360422581148	6.49085642313278	6.90464632947929	7.01631220323984	7.27666080551976	6.99090871519803	0.357507426360929	0.220237221257787	0.614599010846764
Merged-chr9-46066889-3	chr9	46066390	46067390	+	841.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	54070.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	3.16004434770715	3.04995690635663	2.96518847029383	3.29575467823929	3.06623343689956	3.27773129192662	0.641194628721501	0.33155867937343	0.722932048456248
Merged-chr13-5705169-4	chr13	5704666	5705666	+	633.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	152926.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.65176081638237	2.71039580774771	2.65963009245138	2.76226531980205	2.89896819488048	2.91633741925712	0.984199360793395	0.177657124515623	0.558706727133464
Merged-chr7-99953852-1	chr7	99953352	99954352	+	838.0	f0_balb.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	26606.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.00795120566228	3.25729189435086	3.65293913237088	3.14485648424025	2.97237259544371	3.15315995307171	-0.984740743816953	0.156215232222048	0.526526392138867
Merged-chr11-97740374-4	chr11	97739901	97740901	+	892.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054051, intron 1 of 9)	intron (NM_054051, intron 1 of 9)	4303.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	4.04695460813533	3.73418177513325	4.1769401076744	4.15738309222265	3.91174105238262	3.80772634061875	-0.0680415279370756	0.898368956179386	0.976339538755983
Merged-chr9-61386025-4	chr9	61385562	61386562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	13696.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	5.59107535350478	5.20399310084721	4.92836487769011	5.56238247865811	5.2104560088477	5.25400753677614	0.137683123529426	0.728427339542041	0.930478966998914
Merged-chr17-71616787-4	chr17	71616270	71617270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175639, intron 1 of 17)	CpG	555.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	7.63907051355196	7.71599473994835	7.43454052360782	7.77534223866958	7.8706987255584	7.55426673329449	0.200561780213844	0.394962803670458	0.772579826044138
Merged-chr17-35753563-1	chr17	35753063	35754063	+	719.0	f1_balb.idr	Intergenic	B3|SINE|B2	-18887.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.66807186591524	3.42270679498519	3.70923207731292	4.05786778377897	4.19656922181491	4.12700064526024	1.70715855010479	0.00151046496997069	0.0248434017041552
Merged-chr9-21297315-4	chr9	21296823	21297823	+	898.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110300, intron 9 of 10)	intron (NM_001110300, intron 9 of 10)	-6114.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	3.85194007165006	3.51067072019287	4.01164550160436	4.19031665800492	4.49945007918296	4.3100374047043	1.60437944315094	0.00265620361169765	0.038374032310874
Merged-chr14-101559668-4	chr14	101559239	101560239	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	Lx6|LINE|L1	49452.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.06767865496014	5.26168201689697	5.03957979039583	5.55570103482589	5.4049208192377	5.34334374262089	0.611178815455612	0.0826714481447682	0.380387406394043
Merged-chr4-16160195-3	chr4	16159701	16160701	+	922.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3442.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	6.76428555948457	6.81614929815096	6.7040866397814	6.67928982905853	6.93013694850482	6.64743717450067	0.00452321829292125	0.986078125428031	0.997033990984076
Merged-chr3-131698328-4	chr3	131697838	131698838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132306.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	4.9701832145815	4.75357137490499	4.94456022958566	4.99853688987506	5.29717214638481	4.93614319550685	0.450600614972688	0.246211922256404	0.643321082749741
Merged-chr3-133758667-4	chr3	133758160	133759160	+	907.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-214270.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.79033991716582	3.8110629985081	3.82143520130232	3.54371433700789	3.92227961891984	3.89047668753038	-0.0251557138386856	0.96299969623574	0.991018409557203
Merged-chr15-27927161-3	chr15	27926643	27927643	+	771.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98705.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.88866842332659	5.50857217173539	5.26199025590648	5.11866967542821	5.04845450683666	5.00244219230444	-1.05381663214896	0.00514857958291473	0.0624039344406655
Merged-chr3-121682625-2	chr3	121682125	121683125	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033814, intron 5 of 5)	intron (NM_001033814, intron 5 of 5)	11862.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	2.53339845606162	2.63649500230829	2.83552615464523	2.73622265215377	2.35424016862509	2.96534285536972	0.192272357608971	0.819461801271864	0.957283576025177
Merged-chr1-135280860-3	chr1	135280344	135281344	+	683.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	MLTR31A_MM|LTR|ERVK	3240.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	4.01468353383793	3.93846889164254	4.01207641403067	4.16938126212429	3.94374007331382	3.87923288414053	0.0539007331672381	0.914024453252927	0.980851155332372
Merged-chr11-117986825-4	chr11	117986324	117987324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133757)	promoter-TSS (NM_133757)	-33.0	NM_133757	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	7.86894123928761	7.87561296105318	7.69363062949622	7.61713154701551	7.46550086048151	7.61203749629174	-0.370892555630811	0.0950193327398953	0.411040740245449
Merged-chr7-47013958-2	chr7	47013458	47014458	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-5544.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	5.18541696633876	4.99323388682334	4.8501040818451	5.16131425778326	5.20538078228652	5.10277044755838	0.281620091033251	0.448155531667426	0.807085901041859
Merged-chr2-49743254-2	chr2	49742754	49743754	+	740.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	intron (NM_008449, intron 19 of 25)	-44432.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	6.29532108557423	6.42503406792348	6.25347546859938	6.28997286119136	6.44348499125134	6.42969441108958	0.0965781986305913	0.722972257983054	0.928984275173032
Merged-chr7-75782656-4	chr7	75782160	75783160	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65678.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.78963671920184	6.93958981868138	6.77272765967508	7.08820280967833	7.25180264942397	7.26821464212762	0.554436388233756	0.0232162224974767	0.178255782842501
Merged-chr8-22805713-4	chr8	22805195	22806195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-41.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	5.72088864028747	5.74554675741563	5.78956301062054	6.05506279550154	6.22041890568061	6.13079919850158	0.68367955848997	0.0196292313498721	0.159424995818463
Merged-chr6-97364001-1	chr6	97363501	97364501	+	541.0	f1_balb.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	95285.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.24040153987604	3.18982741767325	3.6444028208255	3.58833654999571	3.21347859415021	3.66474781621029	0.489474175571759	0.449471486794627	0.807784692395241
Merged-chr2-150827345-2	chr2	150826845	150827845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 17 of 19)	intron (NM_153781, intron 17 of 19)	15225.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.00548065097709	3.04302123676869	3.19478179905049	2.794862868267	3.11895838241563	3.15479066888867	-0.210694181317771	0.761496456446477	0.941258867861232
Merged-chr19-25027956-1	chr19	25027456	25028456	+	553.0	f1_balb.idr	intron (NM_028785, intron 1 of 47)	ORR1E|LTR|ERVL-MaLR	28427.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.52940700336884	3.31306378595967	3.69346192542428	2.99076783245618	3.16495632941927	3.18098662891475	-1.64855807005448	0.0131159327223969	0.121490652339442
Merged-chr7-123431371-4	chr7	123430875	123431875	+	797.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23558.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	3.55740831688777	3.63457251330187	3.59991666371002	3.54526154219378	3.62803858595263	3.44897845242286	-0.174098296579735	0.757385271565004	0.939861209437025
Merged-chr3-115818375-2	chr3	115817875	115818875	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69684.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	4.74376368621794	4.62700774439284	4.547633825239	4.43180432972989	4.18526933586432	3.86835530359019	-1.16912508425175	0.018002319766592	0.150785640964616
Merged-chr8-122556248-4	chr8	122555806	122556806	+	844.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4977.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	6.18337256336688	6.34367066355294	6.64490806229186	6.54849806462227	6.69153436326791	6.52155048273351	0.323727893869774	0.253528151621873	0.650896916687683
Merged-chr5-99216878-4	chr5	99216385	99217385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145839)	TTS (NM_145839)	36042.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.71892261893844	4.33998576420527	4.66000415089524	4.66681594709396	4.69834080214497	5.12647040377199	0.615511466803841	0.164616042485429	0.539208350811795
Merged-chr18-36282126-3	chr18	36281680	36282680	+	625.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	1018.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	4.54324636296717	4.56002831832238	4.54692485582587	4.65221169544315	4.649056625958	4.57196120519437	0.188018594356595	0.646921849116979	0.90114476203283
Merged-chr5-107921584-4	chr5	107921067	107922067	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	21039.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	2.6239242790356	2.67891026591642	2.59273170877194	2.9062988348392	2.54181279841705	2.7951378557909	0.64413458372435	0.402500836931223	1
Merged-chr11-22850442-6	chr11	22850020	22851020	+	881.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	9215.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.55377303832022	5.5493625142097	5.48722682690234	5.53485226158035	5.65881533484696	5.55016031324122	0.101551730179459	0.751122770086852	0.937718261890661
Merged-chr15-57893470-6	chr15	57893000	57894000	+	946.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR65|LTR|ERV1	-1082.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	6.74311297459705	6.74466805716789	6.35649862140194	6.82894863863008	6.96274393063872	6.8658107601121	0.389389794545881	0.14716228445423	0.511947497171096
Merged-chr19-24477513-4	chr19	24476998	24477998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026520)	promoter-TSS (NM_026520)	-24.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	8.00290309924283	8.05070264119697	7.78625715424117	8.13705336919812	7.89424463788832	7.98763208709367	0.0739629343525489	0.741043924499315	0.934742147011145
Merged-chr14-20546580-4	chr14	20546090	20547090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310427)	promoter-TSS (NM_001310427)	-17.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	7.27127643074167	6.793254378181	7.10960504162419	7.38331925078762	6.46159223364509	6.94347755132309	-0.132465065378267	0.689569786100373	0.917397716197234
Merged-chr2-6086008-4	chr2	6085440	6086440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44245.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	4.40334196094763	4.21834953746076	4.580572221729	4.17121787328063	4.07866656713174	4.23376411045818	-0.658814745583052	0.158660137034568	0.530447689219215
Merged-chr4-99225439-2	chr4	99225008	99226008	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	Charlie12|DNA|hAT-Charlie	31361.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.72763307330773	4.64645021346067	4.39290983358525	4.88560469224726	4.58765833915645	4.50856456529528	0.161620134205825	0.710472791479302	0.924358113435436
Merged-chr2-165056611-5	chr2	165056168	165057168	+	833.862854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	1032.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	3.90624656058027	3.73069908470396	3.64015963451312	4.58062738724754	4.29190214883764	3.94772510020508	1.56497448070119	0.00422887579616687	0.0542182276190221
Merged-chr5-5423265-2	chr5	5422765	5423765	+	663.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43014.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	2.57577553756967	2.56686653473352	2.36169600237911	2.70245232645025	2.48917808984632	2.82401347280887	0.943741393476779	0.253530882818424	1
Merged-chr3-104523784-4	chr3	104523267	104524267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11849.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	6.7690139411905	6.84544802453904	6.03431989564906	5.81729751149556	5.72373773838003	5.75369233108679	-1.42327718200232	2.38152040248679e-05	0.000847931320710831
Merged-chr7-44745339-4	chr7	44744840	44745840	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289839, intron 1 of 4)	intron (NM_001289839, intron 1 of 4)	3009.0	NM_001289836	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	3.68413125202641	3.76183211537179	3.79623784122279	3.41918128147468	3.17449429446374	3.56096825666823	-1.34491239254456	0.0250825885625209	0.187366193474301
Merged-chr3-59342669-4	chr3	59342163	59343163	+	833.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162884, intron 1 of 6)	L1_Mm|LINE|L1	1593.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	4.3280447677286	4.12321990731339	4.5963388599132	3.73526032557207	3.81485079771614	3.94569907944833	-1.53989790428534	0.00298319881303558	0.0419513278409776
Merged-chr17-51813276-6	chr17	51812796	51813796	+	991.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163632, intron 1 of 10)	CpG	-1112.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	3.89242307238508	3.70897647636494	3.32748600601406	3.89351059685094	3.53755520134645	3.69920949352512	0.156437752354619	0.799447996205225	0.952248176414355
Merged-chr11-115688200-2	chr11	115687700	115688700	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	ORR1A4|LTR|ERVL-MaLR	11334.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.48306815718593	4.47418789521841	4.80061651411077	4.67549648684131	4.64392800697749	4.67896688533551	0.197684475401688	0.637017801983993	0.897256731014262
Merged-chr10-67115765-4	chr10	67115260	67116260	+	974.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11498.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	7.12680673107101	6.6351697270056	6.54027683168117	6.77709101967873	6.52143679338559	6.48905007893556	-0.31260337947055	0.296593839266651	0.693171366955017
Merged-chr11-94548465-4	chr11	94547967	94548967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013381, intron 2 of 8)	intron (NM_001013381, intron 2 of 8)	740.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	5.55385230472462	5.57929601094702	5.35045544461395	5.54039536093672	5.61434083193756	5.53639391759558	0.113062692913932	0.729188701217923	0.930601789377265
Merged-chr3-27259333-2	chr3	27258833	27259833	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-57744.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.69891493761779	6.295898335416	5.85186613457367	5.81251456194535	5.89689306385915	5.61516289176882	-0.344263959038482	0.315880303737884	0.710103428795101
Merged-chr17-15831408-2	chr17	15830908	15831908	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4822.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.41386370561159	2.56078464032505	2.40676285355238	2.47363595765865	2.37161550879908	2.60745711753885	0.110557417577993	0.891291709302088	1
Merged-chr11-17005707-4	chr11	17005208	17006208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	3010.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	8.01507882244619	7.82902447015933	7.90930371723082	7.90885229606154	8.18888104328595	7.72922919364335	0.0640438823892685	0.787738715659154	0.94877064431094
Merged-chr5-22856647-3	chr5	22856149	22857149	+	873.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-109765.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.53817845692489	3.52484767635231	3.76027210675326	5.02348806725759	4.93773273212673	4.50687492919847	3.8861654126388	3.45064819152471e-11	5.0638718645571e-09
Merged-chr5-122647639-3	chr5	122647101	122648101	+	909.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	-2823.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	6.67908350457146	6.37170151297853	6.03735721489665	5.84336423258782	5.54668395065	5.59086974121624	-1.26537297256676	0.000134485703137174	0.0036403013619512
Merged-chr5-134541086-3	chr5	134540581	134541581	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	11353.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	3.01411590411121	2.77725941846106	2.76823234257122	3.24915054109632	2.92643811159267	3.15414079564715	1.17476848376587	0.104506136705084	0.431422237693818
Merged-chr13-56353417-4	chr13	56352912	56353912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9488.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	7.00601987583553	6.82667178136875	7.01259622017888	6.9469632219805	6.88952128666052	6.50453002528553	-0.220791876431152	0.411401703351709	0.783877099438722
Merged-chr5-134101743-1	chr5	134101243	134102243	+	552.0	f0_c57.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	1995.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	5.85451571658935	5.84344644522728	5.95842406212272	6.08718357524656	5.93257343522657	6.25045815243888	0.355841960138293	0.234157528466202	0.63036877369004
Merged-chr8-71488637-4	chr8	71488136	71489136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_032544, exon 1 of 9)	5' UTR (NM_032544, exon 1 of 9)	533.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	5.26112472249296	5.37483395513927	5.528036826642	5.46848580985822	5.48668558136924	5.38714965872405	0.13106358301931	0.696573728021903	0.919511799366159
Merged-chr10-80173106-4	chr10	80172627	80173627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152857)	TTS (NR_152857)	183.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	7.994379701192	8.1869543941657	7.4834156673694	7.94828494902297	8.1086905402661	7.72167718548917	0.0147367741683582	0.957089641881468	0.989887454023164
Merged-chr12-85589465-7	chr12	85588973	85589973	+	894.64624	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9632.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.43515480998196	5.10409867014793	5.18528196867844	5.39081207950338	4.94619797365589	5.28183754914669	-0.0808066505740047	0.831728672732023	0.960478468368024
Merged-chr12-33429537-4	chr12	33429029	33430029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172253)	promoter-TSS (NM_172253)	-95.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	7.4597755383692	7.99683155078481	7.48884677478468	7.54773071017304	7.63165773367532	7.34923529803008	-0.232825161173293	0.383037055130498	0.764517188073328
Merged-chr19-4304422-4	chr19	4303940	4304940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1782.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	5.59030530356067	5.77129309976586	6.03006444507239	5.79040252156481	5.98181245619279	5.70752007879855	0.0744304858874683	0.81914254917623	0.957209935971094
Merged-chr10-87910834-4	chr10	87910326	87911326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	49715.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.58085132703251	5.62549137515197	5.26742675407533	5.4951161864361	5.3087923670186	5.33207558781222	-0.25376166651723	0.461967315158884	0.815107818354545
Merged-chr4-12275386-4	chr4	12274845	12275845	+	855.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-103330.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.20606967025486	4.24105226987033	4.40935758123917	3.96917907572402	3.92252649883018	4.39499302732014	-0.511149939249477	0.303135982068114	0.69985349451501
Merged-chr2-50295681-2	chr2	50295181	50296181	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133839, intron 2 of 7)	B3|SINE|B2	1120.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	3.79874460758645	3.92150486281725	3.55672277460308	4.04370508757029	3.7890181199957	3.7446005665177	0.288763979784021	0.601616160894143	0.881993261880913
Merged-chr11-52363477-2	chr11	52362977	52363977	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	2615.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	3.03521178906619	3.19422832529829	3.02116308455303	2.94142542594045	2.84319322091764	3.26354353919777	-0.303057193168169	0.663361904741867	0.907167603449963
Merged-chr18-5807265-4	chr18	5806739	5807739	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	214592.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.42297437386398	6.11321921059654	5.98361392932034	5.78123276926302	5.64429231815733	5.71397113649783	-0.845931682018654	0.00677014186901761	0.0762802931126903
Merged-chr12-111426687-3	chr12	111426188	111427188	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	MIR|SINE|MIR	9243.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	3.74197296393086	3.23453300334918	3.26561614365651	3.51871661575708	3.37024304882797	3.45682305677467	0.0222617596552011	0.972131820182512	0.993868590220018
Merged-chr19-10203965-4	chr19	10203491	10204491	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026919)	promoter-TSS (NM_026919)	-48.0	NM_001271614	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	8.68474446636458	8.90448139158489	8.52452591675795	8.53210406755883	8.75266854305869	8.38558960528007	-0.203197884230778	0.376194873407537	0.759088227619915
Merged-chr2-22743037-1	chr2	22742537	22743537	+	774.0	f0_balb.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-31290.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.59834602451166	4.15743000160893	4.41149006747619	4.1939955834812	4.27664303411275	4.25779149841408	-0.417855394097018	0.373120629471826	0.757006149061447
Merged-chr14-63164975-3	chr14	63164434	63165434	+	824.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360211, intron 1 of 7)	intron (NM_001360211, intron 1 of 7)	12953.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	2.63333459030599	2.40105933727604	2.6790550576883	2.5873906394634	2.33088806981164	2.3663005450621	-0.853375002884331	0.308314002324681	1
Merged-chr11-63047704-2	chr11	63047204	63048204	+	986.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13955.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	6.6383587744683	6.81706401833848	6.66266349448808	6.92342708888424	6.95170066579267	6.65441709057547	0.229063561601617	0.378823808706695	0.761325784964053
Merged-chr2-119742266-4	chr2	119741760	119742760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-77.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	5.28438998240056	5.22471328489456	5.01108199427777	5.21532067822488	5.22355593557014	5.40464738714058	0.181672574043812	0.611174950301126	0.885964478139286
Merged-chr5-62765904-4	chr5	62765395	62766395	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178407, exon 1 of 33)	5' UTR (NM_178407, exon 1 of 33)	282.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	7.10443849530178	7.07043402226947	6.930144363712	7.03775001127734	7.01014275177993	6.62088637175356	-0.194203893695556	0.458873845175041	0.813236440920954
Merged-chr16-22121372-4	chr16	22120894	22121894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	L1MA5|LINE|L1	41905.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	6.27233869253889	6.22790974668908	6.00585164391229	6.50394601637784	6.58254439083937	6.18151569651524	0.437052076110461	0.136203749896756	0.493146752362964
Merged-chr17-26509215-2	chr17	26508715	26509715	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	-743.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	9.28017688154065	9.22791441107289	8.67646622272848	8.9992404010372	9.12903416507064	8.65942981596876	-0.199347617537034	0.440764948716938	0.801967806487315
Merged-chr5-149031393-4	chr5	149030890	149031890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20226.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	7.00709589233471	7.022077857818	6.87240201593982	6.99432640716542	6.81349971024663	6.5895211264105	-0.240521500684252	0.354973224787101	0.741985300392852
Merged-chr7-30419659-4	chr7	30419157	30420157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011827, intron 1 of 3)	intron (NM_011827, intron 1 of 3)	197.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	8.49484340261818	8.40058600426022	8.4630831232792	8.44756600676546	8.74556853420099	8.40538203586149	0.131360604862112	0.543781173043789	0.857551302506722
Merged-chr13-18779794-4	chr13	18779282	18780282	+	833.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	MTC|LTR|ERVL-MaLR	62490.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	4.22923390108105	4.04336173375965	4.03224771662097	4.12770569449903	4.20017212077131	4.3298790806987	0.307106665165135	0.517928420050932	0.844849793679631
Merged-chr15-25365613-4	chr15	25365099	25366099	+	876.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48165.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.73767720532608	4.67018145085356	4.31712657684017	4.57008655750723	4.47563938995563	4.72910752525267	-0.0258614704692954	0.953032687028082	0.989359300570295
Merged-chr6-6577803-4	chr6	6577311	6578311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009169, intron 1 of 2)	MIRb|SINE|MIR	847.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	7.8495229507498	8.28365825376282	7.80137238576603	8.05616435691441	8.336404923393	8.14116621928665	0.257262444369232	0.300651898193167	0.697365586816021
Merged-chr2-34108471-3	chr2	34107956	34108956	+	774.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_130173)	promoter-TSS (NR_130173)	-721.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	5.10388237639059	5.3760246247893	5.13253898344938	5.30880557846467	5.45307014895992	5.12711525554203	0.196870444916146	0.587983264752223	0.876182349656829
Merged-chr17-46341871-3	chr17	46341378	46342378	+	846.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	-13855.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	6.50429142705931	6.64675550473373	6.87666530017409	6.76123830847902	7.06319010693318	7.06659507754904	0.458330445365208	0.0890918035303611	0.396552411905118
Merged-chr10-127292209-4	chr10	127291697	127292697	+	884.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	1404.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	4.92673399091315	4.72927229981473	4.68101724917987	5.08727317956444	5.00372820910921	4.78981608573761	0.406980714701619	0.303072745060859	0.699763498835228
Merged-chr3-153262159-4	chr3	153261673	153262673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36476.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	6.1784587142928	5.81942756933756	6.38021647322989	6.13834220695437	6.42605365033337	6.30970867423926	0.274480666975672	0.380357207877502	0.762528913457925
Merged-chr10-51535502-4	chr10	51535007	51536007	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	44609.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.84276320976395	3.56286333313121	3.59561138824797	3.59112429497694	3.43849582255719	3.76974897164734	-0.268727330592658	0.639223381961619	0.897953829221252
Merged-chr1-186202734-3	chr1	186202212	186203212	+	886.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85402.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	2.75147015173847	3.19785828120738	2.81185695984309	2.41582760136595	2.53530023436988	2.62924091558417	-2.40550040997611	0.00570780196649267	0.0672104915834518
Merged-chr12-20815781-4	chr12	20815274	20816274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015521)	promoter-TSS (NR_015521)	5.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	3.99127765532537	3.94520407893059	4.10242499264958	4.30049937360595	4.49849478347384	4.30995479830342	1.03172499177653	0.0277439815012493	0.198830801268517
Merged-chr8-79362583-4	chr8	79362082	79363082	+	899.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 2 of 6)	L2c|LINE|L2	36886.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.5967049454374	3.80100660863111	3.73549800155798	3.63451746418898	3.82291304163608	3.90384129046947	0.248961718030516	0.644856140347827	0.900333737034784
Merged-chr19-56459546-3	chr19	56459030	56460030	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-2107.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	4.62098912975532	4.78871848277165	4.72111096710583	4.82630958891956	4.87692248711273	4.97129520807326	0.402183419602005	0.304493535748132	0.700969682849711
Merged-chr3-138493914-4	chr3	138493421	138494421	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4539.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	3.36429666623728	3.47639895062337	3.45032022168856	3.36302543235897	3.23845053767146	3.35528041219893	-0.448245628454205	0.452468864567515	0.809456767794566
Merged-chr10-128492163-2	chr10	128491663	128492663	+	985.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317217, intron 4 of 6)	intron (NM_001317217, intron 4 of 6)	846.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	4.63830697148746	4.6028545628427	4.71889666670487	4.66596637172492	5.00061905341823	5.16220998655986	0.689751717405013	0.092647932229104	0.40547891863623
Merged-chr12-3339344-2	chr12	3338844	3339844	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25788.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.2052487441768	3.26717331040583	3.23908217020471	3.5060073804592	3.17517696618127	3.52833989152206	0.676849748109516	0.28072934711838	0.678846264691369
Merged-chr6-72884934-4	chr6	72884450	72885450	+	909.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019715, intron 1 of 6)	MIRc|SINE|MIR	14342.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	4.35153339379243	4.02757034013242	4.37096840404227	4.11198635798833	4.03156063809484	3.92599192614197	-0.639682736443344	0.195377059853589	0.583020169139918
Merged-chr12-4161509-3	chr12	4161003	4162003	+	898.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	URR1B|DNA|hAT-Charlie	27350.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	6.39215044922886	6.46487800440841	6.5023902005229	6.02560850211979	6.05062879905783	5.64227015094516	-0.870275965616229	0.00379715020290412	0.0500084321119415
Merged-chr15-86216715-4	chr15	86216216	86217216	+	840.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	2257.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.53450515946488	5.47495823696265	5.45137761205174	5.53801894195523	5.56155379368698	5.35990092720389	0.0153044841796896	0.96281786523897	0.990984363900451
Merged-chr9-119341142-4	chr9	119340639	119341639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130864)	promoter-TSS (NM_130864)	-155.0	NM_130864	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	6.53264355856846	6.72416262826839	7.02214118510003	6.98442380554627	7.13926873327037	7.1418330564497	0.500157399058006	0.0609091267399592	0.319755622572778
Merged-chr18-82475947-4	chr18	82475445	82476445	+	932.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	822.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.82918278114348	3.75041966229293	3.4236717547642	3.49673139170719	3.33943647561929	3.49671003687416	-0.882757288628882	0.136468676237964	0.493536405268102
Merged-chr14-61498400-4	chr14	61497910	61498910	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	5722.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	3.58302310142627	3.239939900267	3.46084171172422	3.59156521737733	3.56413863757415	3.74122089752383	0.70351945115216	0.233438586318013	0.629826270159681
Merged-chr2-173679429-3	chr2	173678928	173679928	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	19583.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	3.18826742838396	3.30387668219953	3.24792941224799	3.96779361880358	3.7576569961418	3.50676766182046	1.92506728843557	0.00187509088295102	0.0293938512035774
Merged-chr2-27358659-1	chr2	27358159	27359159	+	586.0	f0_balb.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	68949.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.71467996394111	3.7144155870444	3.78806507769166	3.93030912188123	3.42295801327313	3.53512785404664	-0.298692095882628	0.606460734121668	0.884136163326996
Merged-chr2-102987129-4	chr2	102986641	102987641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85476.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.20415757051427	6.33105240063339	6.27806893697006	6.10541274267137	6.17923210300698	6.27888280336345	-0.144853378280885	0.60165579010015	0.881998497315248
Merged-chr11-97026230-4	chr11	97025717	97026717	+	971.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	201.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	2.95037842407391	2.98898901731286	3.29250408284656	2.97703203283982	2.7598852750349	2.91196464919362	-0.933452566621596	0.18822408210146	0.57366944154054
Merged-chr1-88223020-2	chr1	88222520	88223520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-4000.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.09959232462581	4.56354718233602	4.63482930736018	4.56035981380572	4.14386857401778	4.84190029749446	0.21807069968737	0.667298632336947	0.90868987162245
Merged-chr10-57690364-4	chr10	57689859	57690859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	39378.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	5.35808402991918	5.48982243739289	5.70800977989849	5.22623562214893	5.59724716916788	5.44635564255291	-0.151471726607717	0.666245782171634	0.908059329979176
Merged-chr14-31429955-2	chr14	31429455	31430455	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	6145.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.12147147845318	5.18882740450216	5.1317928668571	5.09850155061952	5.09975045666242	5.12859941264997	-0.0858100590839031	0.808759387769727	0.954721853010197
Merged-chr11-115156964-3	chr11	115156427	115157427	+	820.583313	f1_balb.idr|f1_c57bl6.idr	exon (NM_021411, exon 2 of 9)	exon (NM_021411, exon 2 of 9)	2749.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	2.54934529166353	2.4444344599536	2.56456611666633	2.29193253753401	2.31025980686814	2.44962899749224	-1.1001925710562	0.183736939736902	1
Merged-chr17-35209944-2	chr17	35209448	35210448	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4597.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	8.13740316245585	7.81880923753416	7.7908004781213	7.87591254552386	8.37741266329933	7.78593379101262	0.171752663041832	0.521184551158943	0.84693755135567
Merged-chr3-81983326-4	chr3	81982813	81983813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7585.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	7.55279419767889	7.97301903332105	7.55230958881907	7.49097640208915	7.70408736069022	7.28049828995389	-0.293317399840208	0.264766691595327	0.662666328517541
Merged-chr19-3951622-4	chr19	3951147	3952147	+	904.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7161.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	3.71662254698775	3.84602585656416	4.45712985049319	4.39170454994009	4.07666404699038	3.73118286520189	0.141432834543775	0.813506949052143	0.955940138311315
Merged-chr13-81352505-4	chr13	81351992	81352992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	280652.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	6.90377233038463	6.99473712882926	6.6733249010503	6.85625446965872	6.82596594944996	6.55707704442167	-0.172569845241793	0.516198314516559	0.844051513295388
Merged-chr4-147908507-2	chr4	147908007	147909007	+	952.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3598.0	NM_001285921	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	1.88575914670742	1.99208486565558	2.09124560678307	1.7614584230125	1.64724190736389	1.96931268912105	-1.8264143432759	0.102992209636381	1
Merged-chr12-3843629-4	chr12	3843116	3844116	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	18628.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.98870262849904	4.5306708219934	5.03114577833002	4.89677187681599	4.74336582504536	4.85048677292189	-0.0758973291460159	0.855630164805012	0.966244542232428
Merged-chr3-88622372-2	chr3	88621872	88622872	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	978.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.24330508295151	6.43112312652077	6.93429437864406	6.64152388133587	6.67095550388403	7.00490236752345	0.344237003008646	0.271201177432713	0.668450268328228
Merged-chr1-177703610-4	chr1	177703116	177704116	+	905.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26198.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	2.59621818248684	2.45830318891293	2.52655519997391	2.58974682770275	2.71315512185744	2.7875381810674	0.964132791012482	0.212158035260417	1
Merged-chr11-6475228-7	chr11	6474825	6475825	+	989.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011221, exon 1 of 1)	exon (NM_011221, exon 1 of 1)	751.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	7.80546062124271	8.21289280947999	8.1604488249311	7.87026525200779	7.91366021976173	8.30229349408111	-0.0455042153419839	0.85674709202742	0.966606717650168
Merged-chr11-51755682-2	chr11	51755182	51756182	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290785, intron 1 of 22)	intron (NM_001290785, intron 1 of 22)	1152.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	6.60395182078196	7.04873410391692	6.39514104044953	6.6312477218578	6.58269596969027	6.33297323110207	-0.310694613168907	0.310190196300956	0.705739523510061
Merged-chr12-40205522-3	chr12	40205024	40206024	+	570.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013562, intron 9 of 11)	intron (NM_013562, intron 9 of 11)	-6209.0	NM_001033437	380755.0	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	3.07469221335333	2.9612036081717	3.42949145057924	3.10611137547498	2.96514332215245	3.34557951392008	-0.0892163774246784	0.897126687153568	0.975955240159241
Merged-chr18-8624696-2	chr18	8624196	8625196	+	688.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3b|LINE|L1	-588160.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	2.93558866591286	2.69962364222773	2.78702027651709	2.92904524858861	3.12056810937249	3.04533285152584	1.08159489366236	0.130255441989652	0.482495428797355
Merged-chr2-45277773-4	chr2	45277278	45278278	+	918.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160336.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.77757939967137	6.7872227271857	7.07228033357528	6.72318421946152	6.89529923351671	6.51596832982309	-0.228682473044178	0.40065643199374	0.776924744715187
Merged-chr10-53599061-1	chr10	53598561	53599561	+	546.0	f1_balb.idr	intron (NM_025541, intron 1 of 3)	intron (NM_025541, intron 1 of 3)	2100.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	2.96439611134917	2.91397563188011	2.71868723451118	2.83899400372727	2.97308831352492	3.09907992732687	0.464354980484411	0.517704526797578	0.844716414341769
Merged-chr16-4731613-2	chr16	4731113	4732113	+	640.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	ORR1A3|LTR|ERVL-MaLR	5252.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	5.01094517846935	4.90698266157032	4.91984999240735	4.80233321424523	5.13440897445243	4.87280294845179	0.0167520199389649	0.965552330051664	0.991995030766812
Merged-chr14-79541812-3	chr14	79541319	79542319	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	26145.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.74268228968163	3.5556812171075	3.56032653131136	3.47868410568844	3.49927239871951	3.68339628449534	-0.260937317604865	0.644427498186374	0.900210434145893
Merged-chr12-3779871-2	chr12	3779371	3780371	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-27109.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.34165608037624	4.92496409962773	4.41801702493367	4.54694134142323	4.40341891700363	4.0898791779664	-0.571486173012363	0.250897885820604	0.648252208670623
Merged-chr15-74924099-3	chr15	74923590	74924590	+	960.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30961.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.03226390164536	6.04170784472187	6.24177517158839	6.24274558623789	6.53392690003276	5.78211689822221	0.228933229572376	0.490447427734026	0.830053405840466
Merged-chr17-56009223-4	chr17	56008728	56009728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	27.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	5.69287610730097	5.86161549118439	6.14562366407608	5.55543913857503	5.59053287758909	5.73878103349017	-0.503135274913974	0.123103331406489	0.469375521223989
Merged-chr13-37541858-4	chr13	37541371	37542371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	196526.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.31218247086483	3.884012731959	4.00801759081893	4.88412676830648	4.73635320556055	4.38554554676592	1.56265166649826	0.00160758508101334	0.0261206677252407
Merged-chr19-9066058-4	chr19	9065447	9066447	+	897.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	22009.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	2.84893729684751	3.00596150583228	2.88135200333627	2.55021381769281	2.79575562238932	2.7700663886706	-1.05159892713635	0.165712590031027	0.540863657924297
Merged-chr9-55309731-4	chr9	55309233	55310233	+	815.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17180.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	6.86971219785951	7.13438119277752	7.08401498612538	6.30439931556712	6.02770884543736	6.38842548309348	-1.26836964610006	4.13681088059687e-06	0.000187379292189823
Merged-chr1-191097264-4	chr1	191096755	191097755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.03488003272857	7.00049674318293	7.01073429003862	7.24698435679824	7.46161470251145	7.10863543159501	0.412541251898543	0.0922481642235399	0.404648913949724
Merged-chr10-111544956-3	chr10	111544404	111545404	+	745.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	38618.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	3.47470334073096	3.33762771051125	3.34596288757061	3.40641928927869	3.41926352422124	3.30160531126396	-0.0351628075164316	0.952996742847631	0.989359300570295
Merged-chr1-166730402-4	chr1	166729909	166730909	+	783.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-48564.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	2.3072014907328	1.97718626007539	2.2190562627498	2.29358706323504	2.33240580285829	2.42503393933608	1.20507662116566	0.204080954509204	1
Merged-chr14-103543555-4	chr14	103543052	103544052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 7 of 30)	intron (NM_022886, intron 7 of 30)	30211.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.96641502877061	2.79076537144708	3.18788011876089	3.26138623958162	3.15518425010159	2.89822763126891	0.582919066394307	0.414172801232134	0.785669718575296
Merged-chr19-53326531-2	chr19	53326031	53327031	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-2882.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	3.84297998676029	3.69993136930192	3.77322891560169	3.90295128579784	3.37239284675973	3.79236571441653	-0.226656889307432	0.695918895358032	0.919291538728398
Merged-chr2-11588157-4	chr2	11587626	11588626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 8 of 11)	MTE2a|LTR|ERVL-MaLR	15073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	7.01351777898281	7.40086974725097	7.16412234993275	7.10841407956707	7.39225613904736	6.79832796109582	-0.105516794090417	0.708884377297541	0.923793004962159
Merged-chr15-31628410-2	chr15	31627910	31628910	+	726.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	26294.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	3.72104356540228	3.96585018892635	3.92372431235312	4.16124848942932	3.90846108199473	3.94341780896498	0.410841566097511	0.424502121797404	0.792697196836987
Merged-chr5-135990791-4	chr5	135990280	135991280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4020.0	NM_023742	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	3.90223967331124	3.9776058247796	4.07822748896189	3.8810021492331	3.50033124900813	4.00925635056569	-0.563799345163187	0.304689578155307	0.701027910687293
Merged-chr11-98206550-2	chr11	98206050	98207050	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026952, intron 1 of 12)	B2_Mm1a|SINE|B2	3245.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	3.06669556665262	3.13510084997344	3.23892047184886	3.39607398677695	3.14258909181738	3.07352725323749	0.287780655059847	0.65786856911985	0.904859102731141
Merged-chr4-129513605-4	chr4	129513109	129514109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010807)	promoter-TSS (NM_010807)	28.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	6.79396058928492	6.3052997139724	6.98933650645516	6.7933770702664	6.52256105736203	6.8027993852918	-0.019070724551751	0.950185847401623	0.988400419899929
Merged-chr7-122101881-4	chr7	122101369	122102369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028177)	promoter-TSS (NM_028177)	-21.0	NM_028177	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	6.92060079614938	6.85920958799082	6.56226763068897	6.7436732722986	6.5737308874851	6.49359828541851	-0.296295657034418	0.272104560044528	0.669529543069504
Merged-chr13-111808403-8	chr13	111807830	111808830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	CpG	663.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	8.69296113975359	8.4987435472937	8.28848583631924	8.53217499876914	8.27476960719478	8.28711712107101	-0.191802637453228	0.40039031816246	0.77659758967282
Merged-chr5-110269908-4	chr5	110269431	110270431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163538)	promoter-TSS (NM_001163538)	-32.0	NM_001163538	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	5.09521550984108	5.28854784856464	5.28597204145595	5.3955499617327	5.0170967111573	5.31851846023923	0.043890215811446	0.904654047017894	0.978142219404953
Merged-chr1-176824662-4	chr1	176824168	176825168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	10008.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	7.88971460211418	7.72314859903255	7.34501552788975	7.89209133329669	8.44635767418304	7.94813578783129	0.637455410652499	0.022029943941416	0.172216044295128
Merged-chr2-124202792-4	chr2	124202277	124203277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	19581.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	2.63762331819122	3.01152966067106	3.02051933447789	2.96046365946041	2.76124724200845	3.03514998918366	0.0944232864306786	0.898834848567451	0.976432549466174
Merged-chr1-165624792-4	chr1	165624301	165625301	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	9740.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.94271979498938	3.76050193827691	3.40126739860593	3.74011694219508	3.47571962243834	3.81072822962613	-0.161666903288224	0.787721636538439	0.94877064431094
Merged-chr7-90140454-4	chr7	90139944	90140944	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	10231.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	5.55425687667942	6.02865227337379	5.77744883467858	5.59166024887407	5.86146224348653	5.73594164066255	-0.120158346877749	0.719494999268343	0.927884839305547
Merged-chr2-122440750-4	chr2	122440260	122441260	+	841.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172980)	promoter-TSS (NM_172980)	-60.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.19969900536544	3.91640844177675	4.49045467374286	4.11747723067109	4.10807507299473	4.03966262149938	-0.34299464840981	0.4978875059631	0.833817084327451
Merged-chr16-55789659-4	chr16	55789127	55790127	+	893.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32511.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.40901963647138	5.97710956504448	5.96919824185605	6.35811684044544	5.87210174252243	6.10019084619615	-0.0329764815518434	0.920049427583449	0.982226665414691
Merged-chr7-122205633-2	chr7	122205133	122206133	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-13863.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	5.29081786985763	5.41649135252003	5.76237968532341	5.42438592806568	5.30818424423678	5.70304765755529	-0.0297067283469536	0.934302790462897	0.985707838096286
Merged-chr16-31932278-2	chr16	31931778	31932778	+	779.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-1573.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	4.16771967402713	4.50924022823381	4.47848104491653	4.07711396665983	4.66628615874928	4.23607769975549	-0.0726355876909602	0.884843033077413	0.973538624783452
Merged-chr1-7089890-2	chr1	7089390	7090390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	ID_B1|SINE|B4	970.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	6.94797627299282	7.49338460611264	6.78219190491452	7.00707492307045	7.2922189878613	6.99205188339039	-0.0198108905949492	0.947316697906688	0.988008807662239
Merged-chr7-12966938-2	chr7	12966438	12967438	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362140, intron 1 of 2)	intron (NM_001362140, intron 1 of 2)	1100.0	NM_001362139	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	4.11260501233814	3.89993440676305	4.24829079450438	4.03926169029788	4.16448953465243	3.99154209694233	-0.0409960064028902	0.934079813048522	0.985705936387336
Merged-chr2-117093089-4	chr2	117092551	117093551	+	842.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28020.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.93793014029792	5.20748201447815	4.9106443266864	4.99927877141682	5.36090271635836	5.2833023735352	0.404588644757339	0.289533154993653	0.687247889337096
Merged-chr9-5310665-2	chr9	5310165	5311165	+	584.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	Lx5c|LINE|L1	1816.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	3.99390801192907	3.96386379935268	3.992418875841	4.01107229018659	4.03986184666747	4.1997586206751	0.288470209743014	0.55240226514678	0.861703174022806
Merged-chr5-96910941-2	chr5	96910441	96911441	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10331.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.54488367598105	5.26691742058819	5.49322542537699	5.1470611222407	5.62379188208866	5.66300866808635	0.116201848893943	0.749256668040565	0.93722412559109
Merged-chr18-66453552-4	chr18	66453029	66454029	+	997.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5075.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.51691740488876	4.64958661389555	4.90336417923875	5.19596063157389	5.07062647838583	4.77885234117832	0.770502955897057	0.0598262662802705	0.316628335939056
Merged-chr12-85485442-2	chr12	85484942	85485942	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	11552.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.81834564766871	5.58318246381724	4.86975805979558	5.44925167787161	5.29678245007717	5.02309010555842	-0.428492067675759	0.319953510427834	0.713840774786949
Merged-chr8-84664098-4	chr8	84663590	84664590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1238.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	6.95893312512759	7.1759360766155	7.09964855127376	7.19709211397791	7.51376667890732	7.30150097397418	0.40161218732606	0.103800483948832	0.429576136115614
Merged-chr8-39403968-3	chr8	39403467	39404467	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	105987.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.38411021122566	3.42140175315801	3.95377364573981	2.87072543545135	3.11006238146302	3.18415900436584	-2.25577902082354	0.00209424789187719	0.0319915877707577
Merged-chr11-100730304-2	chr11	100729804	100730804	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7911.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	4.73734185102894	4.79588272310405	4.62047248844056	4.7459706949709	4.55645483007353	4.76661705238099	-0.0936914753119389	0.817642784754533	0.956767881392089
Merged-chr16-94625111-3	chr16	94624598	94625598	+	654.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	MLT1G1|LTR|ERVL-MaLR	13679.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.39494787905715	5.17475403277736	5.40736077439915	5.44279955698627	5.47109926743293	5.5276169476989	0.300729847090841	0.372690666674149	0.756537953227832
Merged-chr11-116022618-4	chr11	116022111	116023111	+	729.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008211, exon 4 of 4)	3' UTR (NM_008211, exon 4 of 4)	1893.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	5.44963618792857	5.23918986946491	4.87963580057887	5.22541188421769	5.57793500236621	4.863568555277	0.100584236406166	0.813160069117886	0.955933854959943
Merged-chr17-26779479-5	chr17	26778880	26779880	+	849.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1699.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	3.3346393251178	3.33754214067575	3.57456946637758	3.61762368063573	3.12807154046433	3.79068638758431	0.436839558187076	0.501159860331492	0.835447162288391
Merged-chr12-69299438-2	chr12	69298934	69299934	+	897.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027117, intron 1 of 12)	intron (NM_027117, intron 1 of 12)	2753.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	3.0053873468175	2.96186628654328	3.15257495710203	3.40191141249454	3.26544386774752	3.04306598393331	0.919557483127155	0.166312586052293	0.541553057226702
Merged-chr9-105484513-4	chr9	105484027	105485027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	L1MB7|LINE|L1	10606.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	6.02972626972474	6.32531544882739	6.1076273622093	6.21594597304378	6.49835659229052	6.42880351871977	0.371879072591656	0.200328862724706	0.589297808036559
Merged-chr4-141664187-4	chr4	141663686	141664686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-71.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	7.60016034206883	7.84702658883867	7.57876353954063	7.66247736345642	7.66190791690644	7.68225209480785	-0.0254275466462369	0.910376672852952	0.97984424692051
Merged-chr1-65180006-4	chr1	65179523	65180523	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-881.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	5.1785926818327	5.4063057464508	5.07334184162586	5.53706184121917	5.94847872632181	5.31829266140366	0.783335397434175	0.0385675631061701	0.243374017210542
Merged-chr5-112324296-1	chr5	112323796	112324796	+	672.0	f1_balb.idr	Intergenic	Intergenic	-2073.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	6.79383161907484	6.59202706914653	6.52623992953282	6.12146531866953	5.85293984727026	5.74863333545663	-1.20429248532847	4.50374501806197e-05	0.00144747415833273
Merged-chr1-161864013-2	chr1	161863569	161864569	+	620.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	12613.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	4.07079441009087	4.05888956061229	4.10002131951351	4.06670460833847	4.10881439447727	4.30164695000661	0.231756262786788	0.626067787077682	0.892797621675774
Merged-chr1-71098135-3	chr1	71097626	71098626	+	821.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	MTD|LTR|ERVL-MaLR	4846.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	3.55749422485053	3.24442796905493	3.48875181639959	3.40932104224891	3.49848519049513	3.76145777292432	0.449882521157836	0.455386310945672	0.810916340573998
Merged-chr2-4560696-4	chr2	4560184	4561184	+	841.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	930.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.30923170717958	6.20344863509282	6.31772486702599	6.76766532146486	6.8916896355963	6.56506508634194	0.775707008549014	0.0039541493609794	0.0514812799293341
Merged-chr5-114681914-2	chr5	114681414	114682414	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	9021.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	3.00370231341283	2.86545888435214	3.03988779632387	2.97975898569683	2.75530534429875	2.93487908167757	-0.385390558596095	0.58109146186957	0.873228285171611
Merged-chr8-70355890-3	chr8	70355353	70356353	+	870.214294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2574.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	4.87472617066765	5.02792434160849	5.81078159203182	5.17482146167906	4.86838167156437	5.38794455858334	-0.287030246369445	0.528106328800027	0.850399075083558
Merged-chr10-50592679-4	chr10	50592195	50593195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198007)	promoter-TSS (NM_198007)	26.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	9.20907543968777	9.38031118685601	8.75339181646354	9.10952911620286	9.33998080417399	8.86386812911863	-0.0309644654940623	0.903761642723041	0.977858102400597
Merged-chr2-167800237-4	chr2	167799743	167800743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	109066.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.10146052094279	6.82500974078655	7.12527995352109	7.38957066333467	7.37363281929635	6.81590225775382	0.31420721581051	0.263112982146493	0.661082058032528
Merged-chr14-79397969-4	chr14	79397465	79398465	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145960, exon 1 of 11)	5' UTR (NM_145960, exon 1 of 11)	193.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	5.89647076693894	6.22584081468678	6.17399816848054	6.26633337799881	6.33213004115273	6.14927798752429	0.256649669091952	0.380303160023312	0.762464628759352
Merged-chr2-167353608-2	chr2	167353108	167354108	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4430.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.06779196510824	3.99117407020209	4.07086372914952	4.13545356216665	4.14820867902705	4.04282656932872	0.206874949638766	0.664900512077767	0.907721942545399
Merged-chr6-66973351-4	chr6	66972874	66973874	+	970.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-63225.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	3.3324095266675	3.52424173385478	3.31082999446405	3.3496876233079	3.39936343283118	3.54789054583303	0.127254789643616	0.831673770689662	0.960478468368024
Merged-chr13-20898850-1	chr13	20898350	20899350	+	618.5	f0_balb.idr	intron (NM_012054, intron 4 of 20)	intron (NM_012054, intron 4 of 20)	104737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	2.50451828761655	2.98004191640566	2.98553407716122	2.88126480495106	2.62996854885237	3.16858489495664	0.325039249018314	0.694007281429043	0.919141313420726
Merged-chr2-167314860-3	chr2	167314385	167315385	+	827.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	B4|SINE|B4	34293.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.96116754051871	4.05788939322409	4.16709885080703	3.84446439869214	3.34828729565694	3.64785962784303	-1.42484016974337	0.013244843650156	0.122264130503264
Merged-chr3-28032068-5	chr3	28031433	28032433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	47762.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	6.32750156489855	6.2272201886454	6.41510471588527	6.49435971263755	6.42929411803618	6.36195867222994	0.183912200705228	0.495344540486679	0.832486253750024
Merged-chr17-70835766-2	chr17	70835266	70836266	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11011.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.58058312920067	6.57631364743685	6.25839428132843	6.68770164945853	6.75731966378565	6.23148038814218	0.164404564189781	0.581890724458204	0.873484978987509
Merged-chr10-127288846-4	chr10	127288359	127289359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033072, exon 1 of 13)	5' UTR (NM_033072, exon 1 of 13)	159.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	7.8926244874216	7.55805514423899	7.57739154174017	7.73054782966196	7.6838608663838	7.5654187363363	-0.0359238419921018	0.87880490068757	0.972000507462599
Merged-chr10-94480649-3	chr10	94480158	94481158	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-34199.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.37145239523048	5.27136098531833	5.67116647375378	5.27862004706089	5.2712287717222	5.25382923868694	-0.332462529688894	0.344683564314735	0.733271035704253
Merged-chr13-41468469-4	chr13	41467987	41468987	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18873.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.19599013240146	6.43421645912901	6.82071052793677	6.05408357554222	5.79947473957183	6.65465699189575	-0.478949910029099	0.189137733721518	0.574748833083779
Merged-chr11-115657540-2	chr11	115657022	115658022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-29227.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.57033708695684	5.44180463822586	5.67461213383834	5.93716411050448	5.9578118043134	5.65506994311905	0.562780023884043	0.0785761431916079	0.370245411557127
Merged-chr14-18237188-6	chr14	18236632	18237632	+	815.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	1974.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	5.09329366942283	5.2653448506283	5.47895020678025	5.58969461413452	5.77348793121233	5.7030560110867	0.797143001439483	0.0188256299457817	0.155306699083253
Merged-chr8-92356095-4	chr8	92355563	92356563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033641)	promoter-TSS (NR_033641)	57.0	NR_110452	71296.0	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	4.53940924271236	4.39375356236938	4.4570950201463	4.63330322255649	4.62073159308405	4.43658384712932	0.26812707745375	0.528832618927734	0.850585575598857
Merged-chr2-84530718-3	chr2	84530231	84531231	+	590.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23858.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.13543190738977	5.97154268775492	5.9178962997039	6.00364357380455	6.42217999315523	5.87841071544509	0.21150675108579	0.510071601157909	0.840686100607057
Merged-chr5-146820810-2	chr5	146820266	146821266	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12124.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	6.74805463581623	6.69051003908393	6.76594491867207	6.95125724793216	7.18970092436001	6.91394538839822	0.461105206505319	0.0671050557077548	0.338609913604055
Merged-chr9-56266247-2	chr9	56265747	56266747	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105177.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	6.69584459884564	6.72574524883323	6.38114160143991	6.15561916389375	6.38628149804311	6.21570818495509	-0.578691921257841	0.0408115357593126	0.251970659825335
Merged-chr2-154687023-4	chr2	154686532	154687532	+	956.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30006.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	4.30660794713846	4.36885991050939	4.39129963012657	4.14224888134358	4.47685527156294	4.03282957800771	-0.28583986795976	0.552777027135724	0.861935627193173
Merged-chr2-30827682-5	chr2	30827187	30828187	+	859.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	613.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	6.60554557488572	7.09035307175582	6.66680800922791	6.4567556786974	6.61468331194728	6.53774660718415	-0.431501841379508	0.129303875009381	0.480983362321987
Merged-chr11-83572414-4	chr11	83571930	83572930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011338)	TTS (NM_011338)	6206.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	6.58307923995638	6.47948509183537	6.59494391893167	6.53994211225616	6.43795001525718	6.49922013352224	-0.0967223388038714	0.710254208109009	0.924293540432205
Merged-chr11-59540802-2	chr11	59540302	59541302	+	978.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-767.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	7.75093103139872	7.65941752530096	7.73006046176869	7.23998838545762	7.56875932514313	7.44717287722292	-0.413240079985817	0.0756603955119374	0.362193877955201
Merged-chr10-77624246-2	chr10	77623746	77624746	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	B4A|SINE|B4	1925.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	4.5759841182415	4.13195326359401	4.65065003021603	4.13317791922735	4.48388606670424	4.35303179994699	-0.334796753538309	0.490613597862226	0.830102183404204
Merged-chr5-117976777-4	chr5	117976292	117977292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145564)	promoter-TSS (NM_145564)	22.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	4.86363359924399	4.6729078617326	4.63254378732507	4.59450632425132	4.18224937176731	4.25210128630897	-0.929260040850509	0.0390390037545163	0.245097806526077
Merged-chr18-23844764-4	chr18	23844258	23845258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	40788.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.79955853563702	6.47755861164308	6.47108931111624	6.8688788826939	7.39693093787632	6.70988592478349	0.686053216282688	0.0258343758995972	0.190554422498663
Merged-chr8-72474604-2	chr8	72474079	72475079	+	948.0	f0_balb.idr|f0_c57.idr	intron (NM_001359024, intron 2 of 17)	intron (NM_001359024, intron 2 of 17)	654.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	7.05223275259378	7.30857927369744	7.25143017672317	7.08594950658807	7.26641428280536	7.21562434733963	-0.022144588949085	0.927073294063645	0.983578869536024
Merged-chr8-84415290-3	chr8	84414779	84415779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-85.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	6.92006845985234	6.44397777748785	6.5185508544488	4.24209848013882	3.82559554726066	4.51425844268169	-6.6343865341238	4.3504206136794e-21	3.38308222825267e-18
Merged-chr6-129476912-4	chr6	129476411	129477411	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4132.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	3.14972127549834	3.04134150253054	3.19570344518447	3.1707660539481	3.21171747956854	2.96609968698971	-0.00477934544062657	0.994218544163885	0.998918571480046
Merged-chr8-105263551-4	chr8	105263030	105264030	+	867.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	1064.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	3.27699500920984	3.19389086799124	3.42044854682651	3.37301669950335	3.25654472945522	3.49062831843878	0.301327829745022	0.62165713504716	0.890838690442753
Merged-chr2-30496036-4	chr2	30495507	30496507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21808.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	4.70280958050711	4.49366655582164	4.27307837517303	4.51164794086865	4.52688531595671	4.139573335481	-0.23834984216673	0.613590566391179	0.887300906025089
Merged-chr1-92755419-4	chr1	92754907	92755907	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76238.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	2.6847106825085	2.90607862288707	3.11854851588115	2.61773514651905	2.68538896259046	2.59582783352858	-1.45270970499752	0.0645201281784997	0.331047100294543
Merged-chr6-114883603-4	chr6	114883098	114884098	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	38223.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.03907309309265	6.04950473934418	6.2042412905696	6.05913178597704	5.79279962656751	5.96243730222912	-0.271990179290159	0.359787319282387	0.746109076389308
Merged-chr18-67393110-1	chr18	67392610	67393610	+	570.0	f1_c57bl6.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	2379.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	3.81617814202225	3.72076682033973	3.77023309833957	3.69553388794917	3.57101332569552	3.78918586641915	-0.296034036695829	0.581180630400276	0.873246537431079
Merged-chr2-61582287-2	chr2	61581787	61582787	+	697.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B4|SINE|B4	3701.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.0569808601901	5.95863109110899	6.0005980229338	6.34108807610168	6.36876880575923	6.37447761824424	0.598024046750435	0.0306410836068664	0.211658910605536
Merged-chr19-53464843-4	chr19	53464349	53465349	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028427)	promoter-TSS (NR_028427)	-53.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	5.47106254253262	5.48817744118633	5.73168961280502	4.20650173156569	3.74415714910929	4.36954897295853	-3.71421183421463	2.04217885755086e-13	4.4599899837032e-11
Merged-chr5-120605168-3	chr5	120604712	120605712	+	866.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	7377.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	4.42482553523475	4.1745893928453	4.58976384596208	4.56099099554871	4.01448862998007	4.32650036394976	-0.220257960553987	0.655177657552611	0.904167065613807
Merged-chr7-101405514-2	chr7	101405014	101406014	+	704.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 29 of 33)	intron (NM_001040111, intron 29 of 33)	11126.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.62734506602388	2.44876476358723	2.88759895486309	2.48485168126709	2.47275299107323	2.72894540642129	-0.551590545688957	0.495070588822625	0.832258300794288
Merged-chr8-24422265-4	chr8	24421740	24422740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16706.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.82757579141718	6.21172992648949	5.79066427209355	6.11489042288017	6.51445378430352	6.25033469877013	0.580111731527322	0.0696547150449706	0.345462807978894
Merged-chr7-109752681-2	chr7	109752187	109753187	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-424.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	7.49154632190768	7.89608840165366	7.46432168479215	7.68135147075156	7.7340944442427	7.50032020579681	0.0101371064626954	0.967681735789264	0.992581088872982
Merged-chr3-90115265-2	chr3	90114765	90115765	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 3 of 39)	intron (NM_029937, intron 3 of 39)	11133.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	3.17185163628746	3.24572785336324	3.5501548523485	3.35862487801673	3.36995940256599	3.51767767378841	0.348817070413879	0.571616360376224	0.869547320544841
Merged-chr16-35983979-4	chr16	35983480	35984480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	CpG	617.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	8.27003014634025	8.04733251070485	7.89176657622243	8.13552358178137	7.84687915782032	7.7968348934494	-0.208050566530418	0.384115064548928	0.765293063085998
Merged-chr13-98804655-2	chr13	98804155	98805155	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 2 of 25)	L2|LINE|L2	10794.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.57574664335777	5.45944401585607	5.65395300215353	5.69874846243049	6.1054524571637	5.81996640730502	0.611909840834488	0.0605234540139151	0.318587980837558
Merged-chr5-140350135-4	chr5	140349618	140350618	+	931.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	18162.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	5.22777280289156	5.14142520812743	5.23403003974828	4.6143123232461	4.96984798756886	5.00159357014993	-0.695693043303865	0.0710633407550566	0.349721371142885
Merged-chr2-153275156-4	chr2	153274648	153275648	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16268.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	5.2893266458164	5.36155276415843	5.38355861140615	5.50318081732583	5.59616564131257	5.35370713144017	0.298637111794846	0.372572638309941	0.756417726149072
Merged-chr12-85304912-4	chr12	85304410	85305410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 20 of 21)	intron (NM_145138, intron 20 of 21)	16319.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	6.78117099269012	6.94735617896755	6.50569791385953	6.70345680876306	7.20107427049973	6.8043904756956	0.254318262125253	0.383617243693282	0.76494131641868
Merged-chr2-117843234-2	chr2	117842734	117843734	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	21306.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	4.29026458177535	4.12064194239215	4.14705168484723	4.26738725526311	4.47793873845377	4.67674013865547	0.759007728099186	0.101527794425911	0.425031430800522
Merged-chr3-142621351-4	chr3	142620857	142621857	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010260, intron 1 of 10)	Lx8|LINE|L1	694.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	7.33573608649095	7.36829051901088	7.05025950601889	7.09939321350026	7.23953654650219	6.76280313613652	-0.307278643264915	0.250628539333613	0.648071708284015
Merged-chr5-34519587-4	chr5	34519063	34520063	+	948.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5584.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	4.87075810094019	5.02210997604696	5.27562808649563	4.99057073331575	4.9574996823218	5.21877762518148	-0.00847540685456656	0.982398871730905	0.995997217680293
Merged-chr12-32818361-4	chr12	32817855	32818855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1980.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.37572756879964	4.33950462906551	4.51375612501081	4.10941962503019	4.26182782393568	3.81878686439623	-0.864698624432375	0.0850814366092131	0.386252608791229
Merged-chr17-27008495-4	chr17	27008008	27009008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20A|LTR|ERVK	-9527.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	3.98240193788043	3.83517967403236	4.14904353633193	4.42445432729257	3.86233447519592	4.07735790905651	0.439043930441391	0.404049320733271	0.77930821908565
Merged-chr16-58556279-4	chr16	58555791	58556791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32038.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.36904064130418	5.25792674168213	5.05335099409975	4.38094496400551	4.00023460325477	4.49254307185166	-2.28305544721588	2.97514070456402e-07	1.86412279928737e-05
Merged-chr15-58568177-2	chr15	58567677	58568677	+	616.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	152709.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.24591723406871	2.73671974944447	3.02504735777718	3.50380588518954	3.01039966095862	3.27966062324025	1.08462892232047	0.147542984808649	0.512449667318867
Merged-chr13-105300867-4	chr13	105300362	105301362	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6377.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	5.68181355989491	5.03669917848074	5.52036526947694	5.53088371824311	5.51850667089651	5.76502958779866	0.3100920638659	0.405948331780881	0.780439975167702
Merged-chr19-5491459-4	chr19	5490964	5491964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 1 of 3)	intron (NM_007687, intron 1 of 3)	1009.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	7.30580166432285	7.41953651739465	7.54810514773872	7.18070794074365	7.30960549278864	7.69381755630641	-0.026597452316267	0.917905734137462	0.981747877135909
Merged-chr19-55100063-2	chr19	55099563	55100563	+	615.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	-586.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	6.31860203770817	6.64909835553374	6.32255178708645	6.23716970679045	6.32395097569685	5.87752518319718	-0.448659957314882	0.14339915837032	0.505462897978378
Merged-chr16-76407067-3	chr16	76406565	76407565	+	927.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33238.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.62603069656211	5.78782232128647	5.58368073997147	6.09875239224243	6.00575607794805	5.73212576384909	0.514685835218054	0.103859910001575	0.429671127699052
Merged-chr11-88234210-4	chr11	88233713	88234713	+	795.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29825.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	3.55771971158986	3.64336275612286	3.68917099818909	3.76983136206378	4.20352824000923	4.14822228594454	1.36277861771733	0.0121256617318321	0.115098341476419
Merged-chr2-129384755-2	chr2	129384233	129385233	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13594.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.17629479110129	5.32635455392345	5.64217525190872	5.13550670418711	5.05053749299199	5.70317133187864	-0.139373436695986	0.727644554159513	0.930204882969987
Merged-chr10-67187327-4	chr10	67186825	67187825	+	923.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1575.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.84902491733255	7.22493835468445	6.87322031817455	7.16141954818671	7.32380966743405	7.04530059576233	0.282830292227181	0.281776205510337	0.679890807832511
Merged-chr16-30393166-1	chr16	30392666	30393666	+	657.0	f1_c57bl6.idr	Intergenic	RLTR25B|LTR|ERVK	-4636.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	2.42635020724642	2.62382027586395	2.69285823239253	2.56590838817362	2.4858821061015	2.70540357443446	0.00817867857551058	0.991680280112464	1
Merged-chr7-125560733-4	chr7	125560259	125561259	+	789.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	PB1D9|SINE|Alu	8477.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	5.23683308093088	5.27554299135372	5.34072023367497	5.51628587038425	5.39332318748995	5.24397693358626	0.223361440749255	0.514230166042241	0.842998279174159
Merged-chr10-84919954-3	chr10	84919454	84920454	+	766.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	2341.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	3.52769780421299	3.41099198930149	3.68092727128037	3.26437957641494	3.15835736072204	3.44399786685708	-0.98700666983302	0.107837181001535	0.43862326620598
Merged-chr9-40765128-3	chr9	40764645	40765645	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 2 of 6)	B2_Mm2|SINE|B2	-36128.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.93866460173398	6.31228603287625	6.03733473123266	5.84533790909017	6.02835831377258	5.91003181951496	-0.305138083838212	0.320021828527009	0.713841334732408
Merged-chr11-4189307-4	chr11	4188800	4189800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	2467.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	7.05179981665118	6.84897234886772	6.73594207091404	6.42936298920944	6.84491864557923	6.40411214803061	-0.470118596582749	0.101641133500124	0.425313323423602
Merged-chr2-43806144-4	chr2	43805622	43806622	+	780.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57298.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.10074478041473	5.40516795832776	5.39675037829793	5.46989930588182	5.55742997922549	5.36857025496346	0.329796554167579	0.341792700327031	0.731017930321085
Merged-chr1-92676889-2	chr1	92676389	92677389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28048.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.77761226333244	6.01093488984046	5.74930357372147	5.71390749664795	5.52832012040287	5.73295761348788	-0.369303125853041	0.24433032685756	0.641614718441551
Merged-chr4-35155618-2	chr4	35155118	35156118	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1866.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	3.26088500635217	2.81195986548869	3.0415512057556	2.83829875670776	2.54256328379926	2.67419695968186	-1.90748485108724	0.0174641600280156	0.147557644203318
Merged-chr10-105841259-4	chr10	105840747	105841747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025602)	promoter-TSS (NM_025602)	133.0	NM_001359642	216292.0	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	7.63430185285735	7.42060039842394	7.21021637692772	7.5300177975544	7.60288664556645	7.29210473342925	0.0696992937636015	0.781695415284523	0.946277236309861
Merged-chr3-51719210-4	chr3	51718700	51719700	+	941.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58021.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.86086560948396	4.6271151942925	4.85701826071676	5.05669356754212	4.47881419672751	4.77202513775844	0.0091929161629939	0.983036278247953	0.996204557270927
Merged-chr5-67822258-4	chr5	67821757	67822757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	25174.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	7.27547952433977	7.56084866972361	7.2700166912558	7.41948502895103	7.73028648744787	7.42851023340018	0.234785470205773	0.346446929731056	0.734677492075457
Merged-chr1-160792945-4	chr1	160792460	160793460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013862)	promoter-TSS (NM_013862)	-22.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	4.0987455104947	3.86884730181746	3.5785080071278	3.53526404301353	3.23517880788888	3.35087518765752	-1.78741735395439	0.00394856273098285	0.0514326874952443
Merged-chr12-71864717-4	chr12	71864214	71865214	+	861.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-24829.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.21216243189579	4.49653222925151	4.03346008925391	4.11017570971467	4.45936584443599	4.10451257815044	-0.0660518466724585	0.895786258573036	0.975665889379756
Merged-chr11-61564824-3	chr11	61564334	61565334	+	969.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	14853.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	3.5893338369237	3.44706051176998	3.65201385795963	3.32959501956453	3.32372151566017	3.67138399136193	-0.439581116246928	0.460531576308855	0.814520074002194
Merged-chr15-58244317-1	chr15	58243817	58244817	+	620.0	f0_balb.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29425.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	3.50832609749708	3.5495276259299	3.60683620224967	3.72803866711367	3.44928530451007	3.62429564235988	0.171619433461307	0.761552308381013	0.941258867861232
Merged-chr11-22437701-4	chr11	22437192	22438192	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74591.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	5.4394873931801	6.05068547860642	5.15695986165926	4.42977671813648	4.51286763234155	4.36222985794561	-2.55086593595208	3.18823198511143e-08	2.59068756852687e-06
Merged-chr6-29273413-2	chr6	29272913	29273913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	intron (NM_023516, intron 1 of 1)	787.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	6.88893337622105	7.13010357252475	6.84689190288927	6.90368738472177	6.68120378457271	5.99462836672081	-0.575484800236146	0.0825972193797271	0.380172353882868
Merged-chr14-54863631-4	chr14	54863147	54864147	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177705, intron 1 of 1)	intron (NM_001177705, intron 1 of 1)	511.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	6.9632673952509	6.83878383753185	6.55030609936956	6.51678056396506	6.35623322563784	6.23438779802284	-0.678415664535568	0.0152337388712821	0.134091710991393
Merged-chr10-85183874-4	chr10	85183378	85184378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	1176.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	5.03384970433047	5.04645968697503	4.72238200504935	5.16721725538269	4.54542079444305	4.7060559480186	-0.252956090571858	0.561554135912281	0.865428381262516
Merged-chr4-43042062-2	chr4	43041562	43042562	+	921.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	PB1D10|SINE|Alu	-1761.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	5.30882300795235	4.9743619973189	5.48543278947243	5.37147414748551	5.32553540127288	5.54748134382877	0.296256609426864	0.418969001049631	0.788801788481746
Merged-chr2-76676500-2	chr2	76676000	76677000	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1185.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	3.28846752833851	3.41170949239365	3.32078370239449	3.38263853403739	3.35577219604034	3.33521222079688	0.0611514633597263	0.918478474137209	0.981780723713229
Merged-chr15-101078923-4	chr15	101078473	101079473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24574.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	5.6361512840176	5.29007432794838	6.06579775176627	5.5709220100024	5.56314432521044	5.67395684393514	-0.165965062318765	0.652212423470433	0.902896807825606
Merged-chr13-111929336-3	chr13	111928753	111929753	+	866.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61317.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.19907415778503	4.42351088112252	3.93524637348427	3.7744374235148	3.71399186527027	3.67469841225371	-1.49936867918797	0.0051325679145588	0.0622875320722602
Merged-chr4-141506563-4	chr4	141506059	141507059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	32038.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	7.11079616622021	6.91828122905382	6.43849380821568	7.06832201299658	6.86819912084333	6.70138830437625	0.0416286636479071	0.888784941920025	0.974168707729453
Merged-chr4-63548699-4	chr4	63548194	63549194	+	893.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	3929.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	3.8848084832279	3.84484060637329	4.30802152495806	4.19066258194742	4.23239019152248	4.49360298686132	0.812799538390103	0.107643495294054	0.438328274269729
Merged-chr8-125113485-6	chr8	125112982	125113982	+	863.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	59287.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.87626551126243	3.89009666112161	3.9110739257265	3.95399973687042	3.65222099454698	3.82989487081107	-0.249039397040655	0.633601133460008	0.896059441151508
Merged-chr18-75387612-2	chr18	75387112	75388112	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	20247.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	2.74871807373895	2.84623105544729	3.16501415564966	2.950825124527	2.89979424386944	3.07031514709165	0.224094350960626	0.752707513961133	0.938359370105818
Merged-chr10-41888581-4	chr10	41888084	41889084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	1145.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.70077664572515	5.96696352405006	6.01501436627841	6.30084129745738	6.32557958105037	6.36204009752299	0.737341884885676	0.0113801192669776	0.110157859930977
Merged-chr1-165614980-4	chr1	165614468	165615468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	19573.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.73828904852141	5.63910224062482	5.96483565014998	5.51573598543065	5.98155099148088	5.73824830054363	-0.0191075675948531	0.954593528103536	0.989607025396679
Merged-chr2-91138210-2	chr2	91137710	91138710	+	673.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177720, exon 35 of 35)	3' UTR (NM_001177720, exon 35 of 35)	20066.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	3.38837529803286	3.46001645696658	3.56079198031128	3.60292182488897	3.21181317010785	3.47082268826204	-0.127574380775086	0.833251848786106	0.961037118978666
Merged-chr3-53463697-4	chr3	53463192	53464192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	-125.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	8.3657390836151	8.45239224172004	8.1231236540067	8.34978423616645	8.38409266915494	8.07807848064422	-0.060559069231015	0.7896026468397	0.949278919326382
Merged-chr11-75738095-4	chr11	75737582	75738582	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009536, intron 1 of 5)	intron (NM_009536, intron 1 of 5)	5195.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	5.10824278509285	5.03035285754806	4.88367881856696	5.04620376324514	5.26804806134296	5.09651199656506	0.271447536015066	0.463773861484676	0.816038286358001
Merged-chr12-29698217-4	chr12	29697719	29698719	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-11774.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	3.57003564576729	3.45166955437584	3.5996373558231	3.68629894491573	3.83813220938725	4.1442306340187	1.19395549980389	0.033628286507362	0.224066500937266
Merged-chr11-51819533-2	chr11	51819033	51820033	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	37948.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.87360008050262	3.94601346804644	4.24708960510554	3.84717343286111	3.74221689915211	4.39210862129431	-0.0284330629402098	0.959164424006554	0.990174309444982
Merged-chr19-24476673-2	chr19	24476173	24477173	+	846.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_026520, exon 1 of 1)	exon (NM_026520, exon 1 of 1)	801.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	6.42407258763178	6.88220493429191	6.52269446033665	6.55617032009753	6.54472485044016	6.63334817507136	-0.0892864673112031	0.750917708705782	0.937674068369247
Merged-chr3-116425101-4	chr3	116424609	116425609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamSINE1|SINE|tRNA	-1077.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	4.86714621569871	4.90936883939955	4.88583418770977	5.00085357708439	5.17601724155919	4.83599747401474	0.295967427381133	0.439615857455824	0.801216871474848
Merged-chr8-75085484-2	chr8	75084984	75085984	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8134.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.36048531323606	7.45243143871147	7.56647839951186	7.12304796275875	7.49956472284782	7.13174008481524	-0.273705050637831	0.276955260594056	0.674300483482859
Merged-chr17-6963160-4	chr17	6962663	6963663	+	928.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2007.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	4.61263969563807	4.78606677977069	4.81662715561033	5.81105488187598	6.00075120959062	5.5706927581438	2.18123965339301	2.8950176342147e-09	2.95206651112423e-07
Merged-chr9-50857533-1	chr9	50857033	50858033	+	570.0	f1_balb.idr	intron (NM_001286553, intron 1 of 16)	intron (NM_001286553, intron 1 of 16)	609.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	4.95105493966131	5.12634269384483	5.20305975791249	5.06283551072962	4.84079816529816	4.68323488230151	-0.466273381938126	0.233184956077839	0.629641306045157
Merged-chr1-191074029-2	chr1	191073529	191074529	+	926.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	11008.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	8.52988712621881	8.53430864107584	8.49408531388866	8.37226551612046	8.74220480720519	8.37362827378979	-0.00765120504010332	0.972410827976842	0.993868590220018
Merged-chr17-47543383-2	chr17	47542883	47543883	+	661.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	38332.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	2.41235564868085	2.30571325050272	2.56265017714122	2.3878155475303	2.26874104892635	2.63597186962894	0.0430543800951692	0.959100483567368	1
Merged-chr2-94436237-3	chr2	94435733	94436733	+	830.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	1953.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	4.73222027978819	4.24250765522332	4.85071829640021	4.5733586461209	4.59835560817989	4.25814688219502	-0.329206928119037	0.490398967735377	0.830053405840466
Merged-chr11-46287008-4	chr11	46286518	46287518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 3 of 30)	intron (NM_001252459, intron 3 of 30)	25340.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	4.34390315769234	4.31640933203845	4.43294554407597	4.55852887113526	4.54003944709555	3.89886063276976	0.0363463964750728	0.942987915813019	0.987224841294637
Merged-chr9-32716278-3	chr9	32715769	32716769	+	959.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	20227.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	2.9792266626244	3.48352044122843	3.46415982128636	3.18976950832659	3.04545328643736	3.37667057842952	-0.49051690409407	0.47351817918344	0.82090428702971
Merged-chr14-73445275-1	chr14	73444775	73445775	+	948.3333130000001	f0_balb.idr	Intergenic	Intergenic	-59986.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.75859899648961	7.58870051748408	7.64109923455227	7.54191783444159	7.71202511433568	7.57495010402512	-0.0727995494672019	0.744766170260763	0.936032341688524
Merged-chr1-125437258-2	chr1	125436758	125437758	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1531.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	4.63278724153501	4.73716356760369	4.87330058935751	5.09229060747126	5.24943761425203	5.36036804499006	1.06264286805889	0.00508170530380554	0.0618365801285538
Merged-chr14-45687355-4	chr14	45686851	45687851	+	790.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29208.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.15264956369324	4.07475084537233	4.40894275055877	4.21777865300204	4.30149208868268	4.35038206979231	0.218305313659181	0.639372722637763	0.898058009901615
Merged-chr8-25995594-2	chr8	25995094	25996094	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1473.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	2.74732228940813	2.73075943677619	2.80744621509203	2.67636969737876	2.46804985668736	2.88007295527536	-0.43918195553525	0.569579849503058	0.8688875602138
Merged-chr7-55868487-4	chr7	55867993	55868993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	Lx10|LINE|L1	26422.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.772301604797	6.98982531296847	6.77848114031559	6.84029249391599	7.14763310401437	6.92622323586301	0.198867736154698	0.442846602737561	0.803396339134839
Merged-chr2-70091950-4	chr2	70091440	70092440	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	RLTR14|LTR|ERV1	52814.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	5.13456355917	4.87256782132933	4.71472679829264	4.33589543668669	4.4860271225134	4.438212457056	-1.19330454210869	0.00533125843027444	0.0639566539022888
Merged-chr11-117200898-4	chr11	117200381	117201381	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	1220.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	7.25834131654751	6.85582766704409	7.18245421383071	7.39215443209621	7.39351443391748	6.70470774056638	0.155279878768728	0.606219850665767	0.883909633699718
Merged-chr10-89454005-3	chr10	89453494	89454494	+	750.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163504)	TTS (NM_001163504)	-10027.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	3.79872629921724	3.74098398932742	4.11157101034912	3.18617677517307	3.17516482401433	3.51899312059017	-2.26277569368545	0.000409307362299905	0.00894840961698646
Merged-chr14-104523214-2	chr14	104522714	104523714	+	610.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	-548.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	5.06531668618751	5.08541013999962	5.2770947893161	5.4158784852336	5.49045232666848	5.30932142740093	0.555105688329368	0.110227852923692	0.44355436116098
Merged-chr8-119807951-4	chr8	119807439	119808439	+	837.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29523.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	3.34762160483944	3.13106559859722	3.17822894711285	3.12530153712899	2.98911476713348	3.25010343855543	-0.450283884675962	0.489526236774899	0.829739482756292
Merged-chr19-46979124-4	chr19	46978610	46979610	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	RSINE1|SINE|B4	-9543.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	5.1846737014038	4.93107971095879	4.58333591784079	4.17143893261408	4.43952304797376	4.16992306610133	-1.58549130107471	0.000836108739555006	0.0156620747413086
Merged-chr11-70525271-4	chr11	70524776	70525776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008946)	promoter-TSS (NM_008946)	-81.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	6.64088870680398	6.45887436228283	6.19236992647129	6.46713809585388	6.36236377218669	6.04425125958193	-0.229834714377295	0.446243629388394	0.805742679820096
Merged-chr8-95488891-4	chr8	95488404	95489404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009974)	promoter-TSS (NM_009974)	-84.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	5.02096107752824	4.39797064838125	4.61314778578748	4.9392907972362	4.08529194007375	4.32081214618983	-0.474011036124912	0.372238119555803	0.756099728816208
Merged-chr8-18935679-4	chr8	18935189	18936189	+	866.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15182.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	5.13084508013743	4.9562111761033	4.7174844277291	4.37844002559982	4.69217382293014	4.89813691383057	-0.646441067228722	0.133271589061118	0.48836948380917
Merged-chr15-79775309-2	chr15	79774839	79775839	+	555.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-872.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	4.7969085188308	4.85116535061269	5.21803044094538	4.93405159757387	4.81339356467744	5.09494522990507	-0.027267861688711	0.945454049423896	0.987909250703712
Merged-chr14-8094809-2	chr14	8094310	8095310	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3401.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.79320317295001	4.75359701543989	5.39008944338484	5.08422157870345	5.38913389331465	4.94116620820931	0.337574196320212	0.429177471074962	0.795655168027537
Merged-chr16-23286263-2	chr16	23285763	23286763	+	780.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-4207.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.62973008970454	5.66442672681861	5.99768928610701	5.60205462473817	5.65418668956699	5.65203304823588	-0.231406978027004	0.474533394765367	0.821557327262028
Merged-chr12-40583943-4	chr12	40583444	40584444	+	928.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	ORR1D2|LTR|ERVL-MaLR	137891.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.27239252150244	6.50682588818486	6.13568077216679	6.1880480823893	6.00427806605956	6.27969127723318	-0.283267340272874	0.33667561173412	0.726695312611484
Merged-chr1-180330405-4	chr1	180329902	180330902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081175)	promoter-TSS (NM_001081175)	-74.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	6.12853502867434	6.25704214672119	6.60676691380948	6.34223016391403	6.56954715843584	6.4644580464084	0.212912186307697	0.466953751361615	0.817726775613958
Merged-chr18-75004675-1	chr18	75004175	75005175	+	693.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1164.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	4.27991004882178	3.82684349334121	4.68276956914311	4.50810202362931	4.5103290459149	4.78274725867582	0.753245078267811	0.14947932306339	0.515961080764456
Merged-chr5-54045744-4	chr5	54045254	54046254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	47231.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.35685038137482	4.1899559978572	4.48245629916838	4.28090637852008	4.07108596034052	4.42734355223733	-0.22625366380293	0.629807843365886	0.894377678440432
Merged-chr17-17899389-2	chr17	17898893	17899893	+	832.450012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11569.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	3.40632438980253	3.39183790285669	3.2418137549101	3.24255608873636	3.33643713801002	3.31385140698457	-0.215288719092226	0.72359568176813	0.929080851011554
Merged-chr4-9648164-2	chr4	9647625	9648625	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	(TTTA)n|Simple_repeat|Simple_repeat	-4408.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.80114030617244	4.74083688594658	4.62234229133061	5.36496010420239	5.51810389969458	4.94466117345616	1.23806552777516	0.0019745680919135	0.0306644012302983
Merged-chr8-11472319-2	chr8	11471819	11472819	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	MT2C_Mm|LTR|ERVL	-5610.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.8007540135748	4.80101645585551	4.43864527648905	5.10004577415011	4.88050464092915	5.10248364122216	0.716501062987989	0.0815488575890652	0.377707617159529
Merged-chr14-52019033-4	chr14	52018541	52019541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033805, intron 6 of 6)	intron (NM_001033805, intron 6 of 6)	672.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	6.56268795245706	6.56439457052047	6.66705911511616	6.80884611390292	7.05882410903916	6.80432426316183	0.483427307289778	0.0604390082162716	0.318397557992229
Merged-chr3-149086294-4	chr3	149085789	149086789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-131654.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.30810976161228	6.36882966737242	6.19231684267129	5.57524478494185	5.54318014471728	5.68467839901043	-1.23301834404872	3.20297387795011e-05	0.00108860509878762
Merged-chr6-31413092-3	chr6	31412585	31413585	+	868.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	14257.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	5.10429623775218	4.57536753237645	4.60360067563861	4.93526459895726	4.46311271100828	4.79296451801014	-0.116887703569353	0.796827265452103	0.951540680890061
Merged-chr3-27863526-4	chr3	27863000	27864000	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32868.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	6.46478099974316	6.43213842549847	6.08815300734575	6.15813221373749	6.1897925940716	6.00753451689764	-0.372173174696729	0.20364023404891	0.593772877132904
Merged-chr19-41446300-2	chr19	41445800	41446800	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-61230.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.38976197321274	5.63926126389943	5.35659001943374	5.30526407895961	5.23303593038708	5.26011765411522	-0.412704724809416	0.230414585940952	0.626271502694957
Merged-chr11-120234791-2	chr11	120234291	120235291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	1844.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	2.76923773333714	2.86404929275358	2.95298261066679	3.57739711622855	3.54183642745494	3.60933313435021	3.56916135861719	6.56276243313609e-06	0.000279179108658685
Merged-chr4-53412678-2	chr4	53412178	53413178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27735.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.56657631162929	5.34581179676393	5.31732940795487	5.42528455200119	5.56677493937313	5.21454937601551	0.00542874957586101	0.98763071915918	0.997223245230291
Merged-chr8-69272001-1	chr8	69271501	69272501	+	608.5	f1_balb.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	921.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	4.17336233217322	4.21178668062925	4.09073127005734	3.65994820736136	3.62818960249684	4.06666918140484	-1.15456676261038	0.029602255917416	0.207056532479518
Merged-chr13-64129353-4	chr13	64128855	64129855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-25.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	5.76565483565321	5.75096622234872	6.18323221811649	6.32747366820312	6.42962175477237	6.43171401205756	0.843458516593951	0.00494675508017107	0.0607863433836209
Merged-chr2-3332627-4	chr2	3332131	3333131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-3.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	8.35405219695685	8.60780685012229	7.96318388344271	8.14659250245676	8.36725921326367	7.76982907897698	-0.303060880349237	0.275408564789553	0.672917218000561
Merged-chr15-80254407-4	chr15	80253924	80254924	+	799.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-760.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	7.67536812346464	7.75892522400801	7.59784056122813	7.59196872102584	8.02730181290118	7.55610392891021	0.103906823011319	0.677164382104891	0.912699165331091
Merged-chr13-14630230-4	chr13	14629740	14630740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104646)	promoter-TSS (NM_001104646)	-5.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	6.01998293306109	6.39205934030273	5.91160501071451	5.87426047439222	6.15144842683976	5.89811475123717	-0.250201798559958	0.434868376288911	0.798660466628143
Merged-chr17-10565476-2	chr17	10564976	10565976	+	880.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	MTE2b|LTR|ERVL-MaLR	109260.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	2.89962206284607	2.66829937162878	2.90321042994385	2.77174751289266	2.90942825544872	2.85535857005515	0.113418464232854	0.874912958157234	0.970813891247597
Merged-chr16-10993162-4	chr16	10992656	10993656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019980)	promoter-TSS (NM_019980)	-35.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	8.08093179652897	7.97254172445057	8.10050941994692	7.97929938291254	8.13186367917254	7.71303162676487	-0.127198406061879	0.580018794522119	0.872727119904853
Merged-chr7-88252831-3	chr7	88252352	88253352	+	633.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-25233.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.09123895032089	5.04834712050077	5.36201046101394	5.0967007280541	5.21809135808587	5.75561902626945	0.423022238466512	0.283563169264645	0.681376161050487
Merged-chr11-103399280-2	chr11	103398780	103399780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	B3|SINE|B2	13384.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.31129984636332	6.0888797837193	6.39695181698438	6.45020700156911	6.45615614331784	6.03756606973682	0.123110229500847	0.680823944567887	0.914491400384276
Merged-chr10-77607469-4	chr10	77606922	77607922	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	B1_Mur4|SINE|Alu	824.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	8.33543258693499	8.49857961310953	8.04519533294588	8.2048209525433	8.51894644211444	7.73824942099432	-0.150691140572366	0.591345549890967	0.877565221474351
Merged-chr19-34270441-4	chr19	34269963	34270963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15090.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	5.75477831748432	5.44086688678421	5.51990080430955	6.50150352055434	6.4169952932164	6.38871902216953	1.47699436470823	1.0727047944828e-06	5.74743210169512e-05
Merged-chr5-104955441-4	chr5	104954940	104955940	+	762.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	27277.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	2.46276027819519	2.4734157617945	2.65438383477823	2.82834480882266	2.72565743253108	2.96804297798039	1.78707269886662	0.0231938404402984	0.178164619253411
Merged-chr9-90021626-4	chr9	90021120	90022120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 26 of 26)	intron (NM_001357743, intron 26 of 26)	-32647.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.72572302092249	3.31424645456186	3.26013475310002	3.80574913330581	3.66499142306948	3.78904218417255	1.02136173103503	0.0988665439477145	0.419333642002316
Merged-chr1-180764078-4	chr1	180763587	180764587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38044.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	3.37226329357905	2.9186713748084	3.28875470581465	2.93792021260747	3.36558157471576	3.13081533504293	-0.192981985903284	0.787337636460614	0.94877064431094
Merged-chr2-26911772-2	chr2	26911272	26912272	+	716.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_013721, intron 3 of 7)	intron (NM_013721, intron 3 of 7)	965.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	6.03235984313676	5.99075372884409	6.12684858606726	5.55131877034055	5.83311850978302	6.06162870723132	-0.391241976236239	0.215860609367415	0.609244934233767
Merged-chr2-125789377-2	chr2	125788877	125789877	+	763.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6507.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	4.47534779082062	4.36609234754023	4.79763284462587	4.43954400205336	4.50696695818801	5.11632075512507	0.386190970807672	0.417010111492853	0.787768914407335
Merged-chr8-88207573-3	chr8	88206973	88207973	+	924.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	L1MD2|LINE|L1	8260.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	5.28893217690801	5.27254768127738	5.16514554116468	5.05331015230747	5.13368491020918	4.86254973222973	-0.445200550739621	0.223397991270165	0.618087468987021
Merged-chr7-28339514-4	chr7	28339012	28340012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-793.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	7.65234360975885	7.55941860573827	7.37061673974295	7.74747023044554	8.00575402018266	7.70067352358376	0.422782924716275	0.0743452822550312	0.3586781611803
Merged-chr4-3647752-4	chr4	3647231	3648231	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8775.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.96064808591156	7.82871397198105	7.55885005792758	8.00217022867258	8.14665508410018	7.78568802365762	0.274505205043484	0.257273779474254	0.654575484420673
Merged-chr2-128793281-2	chr2	128792781	128793781	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 17 of 18)	intron (NM_008587, intron 17 of 18)	-25022.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.12479552827852	3.33585247516733	3.71637002428824	3.34059401943452	3.64801701354437	3.58816359766429	0.454467380519314	0.480980724404421	0.824891904452147
Merged-chr15-103393746-4	chr15	103393256	103394256	+	983.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26965.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	3.69410408723322	3.62012634205122	3.3071921644602	3.52121818927513	3.21168373819702	3.55292482643416	-0.457848698728772	0.462317067012617	0.815159087955196
Merged-chr2-75734360-4	chr2	75733856	75734856	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29693.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.97407525791162	7.05053215327627	6.96155561741173	7.07750010225551	7.16675354513723	6.82863336487287	0.0672011928032666	0.787794422983023	0.94877064431094
Merged-chr19-10846261-4	chr19	10845713	10846713	+	832.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3669.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	5.17429855212545	4.99186115318544	4.97672986124521	5.46797313334458	5.36663486923648	5.43862301127065	0.742303213598803	0.0350379843016077	0.22970829966663
Merged-chr4-43561106-2	chr4	43560606	43561606	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	1477.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	6.66656744145649	6.56435930459398	6.8490639165777	7.18480857926412	7.22880751152601	6.89293175117706	0.658610147844112	0.0113765747709252	0.110154825129702
Merged-chr2-160171285-4	chr2	160170763	160171763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	154610.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.40068755271894	5.0540042583913	4.97596552345373	5.1165057535271	4.71031901095855	4.96782210520415	-0.483490064846332	0.227790414439033	0.622912839439754
Merged-chr13-111792287-1	chr13	111791787	111792787	+	636.0	f0_balb.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16706.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.08392007082707	3.8693983320385	4.15128694836556	3.79999568403688	3.75896470579123	4.30172877724081	-0.207280407777126	0.700770029170884	0.921002460903367
Merged-chr4-119976107-2	chr4	119975607	119976607	+	662.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	161429.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.90920699354261	3.58008515434572	3.49843474239907	4.01987806139161	3.75761277227156	3.63134315172681	0.435494384218152	0.453057776732726	0.809584436639875
Merged-chr7-44984480-2	chr7	44983980	44984980	+	680.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	1940.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	2.89238583552491	2.98850690221735	3.49661620521659	3.52413752910617	3.43221457085671	4.22770973087716	2.21441561462398	0.0583593503189991	0.312188832319585
Merged-chr15-8682760-3	chr15	8682274	8683274	+	703.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	28033.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.49348705899258	3.48575152016382	3.3637001102912	3.60993203386372	3.67515996638044	3.71058337556692	0.75512006364837	0.182792256858259	0.565650567468555
Merged-chr1-35993196-3	chr1	35992723	35993723	+	825.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75177.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	2.92332466744554	2.78314882268613	3.01881626827341	2.87184643581822	2.78932889241935	3.03336144242486	-0.0557512901685689	0.936805885612755	0.986037792257163
Merged-chr13-9504517-4	chr13	9503980	9504980	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	227955.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.51959097843344	3.63705276833947	3.63230381318277	3.17060638623287	3.35554835023919	3.54760226408098	-0.879681546991452	0.145692450094741	0.508889991918531
Merged-chr6-38320788-4	chr6	38320275	38321275	+	889.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 7 of 8)	RLTR45|LTR|ERVK	-21516.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	3.5805736227117	3.41597085125764	3.56580383562832	3.46288573441923	3.29507286892724	3.41951565980266	-0.491303622457738	0.402446131328852	0.778034751471189
Merged-chr7-31151047-4	chr7	31150548	31151548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153431, exon 1 of 19)	non-coding (NR_153431, exon 1 of 19)	123.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	8.47387112939585	8.67918811440571	8.48277922817098	8.67028860827696	8.64844467890509	8.51629475236274	0.0893896488440849	0.664346629276096	0.907585158243155
Merged-chr4-141016603-4	chr4	141016102	141017102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008546)	TTS (NM_008546)	5965.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	6.56782400858106	6.74097701144817	6.61607229913861	6.65734136250244	6.88198720604942	6.22829104623212	-0.0189171664303701	0.949244518948428	0.988169196639905
Merged-chr7-101383533-1	chr7	101383033	101384033	+	836.0	f0_balb.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1993.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.52775222811827	8.45803142683663	8.09437588503782	7.99515036192054	8.3898436864021	8.13603260075251	-0.266732546929932	0.27364753702276	0.671005315380766
Merged-chr2-167386091-2	chr2	167385591	167386591	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35619.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	2.48258120348785	2.48884633724401	2.81866928570472	2.67526612940731	2.59973357849357	2.89098469673588	0.675456232098189	0.390624692016467	0.769814299969358
Merged-chr1-58424929-2	chr1	58424427	58425427	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-839.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	4.46139153097688	4.11774083514043	4.48700191850575	3.68603535192275	3.85513052868331	3.88387261850478	-1.62438157897871	0.00182074155568691	0.0287182236059732
Merged-chr8-125569573-1	chr8	125569073	125570073	+	1000.0	f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	CpG	290.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.96521762271499	7.02998271039922	6.58677354176065	7.03577025829092	7.09340152888692	6.89184912749927	0.195461725078268	0.462104321812005	0.815108250633334
Merged-chr9-63719729-2	chr9	63719229	63720229	+	952.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	MIRc|SINE|MIR	38265.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	2.71307067035262	2.72898893102331	2.68168051299116	2.76539225231069	2.59279379359964	2.81699507716513	0.0769646925666882	0.917021879872134	1
Merged-chr19-23145253-2	chr19	23144753	23145753	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010638, intron 1 of 1)	B1_Mur1|SINE|Alu	4027.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.69797398669466	2.49557471379893	2.7212889505702	2.72774447311845	2.45506648870745	2.60715607737009	-0.228108566651253	0.771017395944083	1
Merged-chr10-98708379-4	chr10	98707883	98708883	+	946.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206259.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.10242331686662	5.31863816172267	5.05965119240383	5.16035384645249	5.51906517251434	5.32620811224799	0.358433035939008	0.326357483789113	0.718667059522694
Merged-chr9-124090663-4	chr9	124090165	124091165	+	839.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11518.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	5.10331970128836	5.19037879427872	5.33310502043877	5.15056732520537	5.4517832063433	5.69194356029923	0.470138485577164	0.199349329425418	0.58779089308399
Merged-chr17-23985205-4	chr17	23984702	23985702	+	957.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9972.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	3.39553103055679	3.54159132336835	3.25669820244382	3.5315117416751	3.65258397506821	3.61587186789605	0.696152497544243	0.239829475974657	0.636770540094307
Merged-chr11-63060117-4	chr11	63059613	63060613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1546.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	4.04548470721752	4.10506430598718	4.15193028075449	4.35575630526314	4.18741953452787	4.30996605217004	0.513476202782513	0.268823882050802	0.666000642460643
Merged-chr7-16287236-3	chr7	16286757	16287757	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136471)	promoter-TSS (NM_001136471)	-462.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	6.02503721800599	6.15187198153349	6.15471468608851	6.19244905426353	6.55472521615006	5.98651752480572	0.289459603260127	0.350715604706784	0.738718712951653
Merged-chr16-21403575-5	chr16	21403028	21404028	+	894.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-19590.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.84312852648644	3.79403048127099	3.74793629253628	3.9457822797358	3.5946565349344	4.1063383166177	0.291898877955118	0.594662950821261	0.879219496285147
Merged-chr15-103304033-2	chr15	103303586	103304586	+	883.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6352.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	3.89969031257547	3.90542788470345	4.25729281990879	3.97684560486449	4.29127876722841	4.19389226108264	0.410684017502863	0.415227838324259	0.786190894237809
Merged-chr10-68283271-4	chr10	68282761	68283761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4535.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.37644676347269	7.12909128381917	7.30072563007212	7.4408170170553	7.61536822642881	7.1652635138912	0.234357029914051	0.354742335450039	0.741848255752265
Merged-chr14-46760464-4	chr14	46759963	46760963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028222)	promoter-TSS (NM_028222)	-78.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	4.73946253814784	4.62582756817659	4.82921111920623	5.38755649257041	5.31886784706619	4.59604366487179	0.926294266967996	0.0334913206584835	0.223416675713536
Merged-chr4-43043638-1	chr4	43043138	43044138	+	540.0	f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2582.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	5.37919742449012	5.60784100403725	5.8531192959441	5.69712874360308	5.75204190200063	6.00288790511317	0.365676813989532	0.276041400522745	0.673393624422867
Merged-chr3-31100951-2	chr3	31100451	31101451	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5893.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	5.93099483565719	5.99325047400574	5.89901710999102	6.32818704550917	6.55167795151909	6.37302183623349	0.810986249455724	0.00414891065643217	0.053365675977803
Merged-chr5-72795243-2	chr5	72794743	72795743	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-42466.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	2.54949029584353	2.44449517380346	2.76298907104011	2.71171619361959	2.52522869544876	2.58982868568299	0.132595918123344	0.865647895899974	1
Merged-chr5-112240877-4	chr5	112240376	112241376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11642.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	2.99831093052347	2.80074271113243	2.97706775858309	2.8429599654437	2.93167589502484	2.99034408379226	-0.0227258289885207	0.973818405630951	0.994153582506075
Merged-chr17-51180511-2	chr17	51180011	51181011	+	657.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1159.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.67097206384083	3.94593428295796	3.67163594245398	3.83863906877581	3.70124557823895	3.5745632087776	-0.20512724279558	0.711246509719583	0.924628659085065
Merged-chr19-16133555-7	chr19	16133018	16134018	+	966.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	CpG	687.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.45454111222967	7.05270928172878	7.56825054716716	7.71825430129356	7.15420757123901	7.54044617635746	0.171376514788925	0.54601953553819	0.85849711034619
Merged-chr5-117164763-3	chr5	117164302	117165302	+	792.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	31214.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.34647592548504	3.36565105648129	3.33689088450865	2.97530909961661	2.67998022703657	2.86840201313862	-2.58184480194409	0.000737562483464903	0.0142359311352697
Merged-chr2-180116217-2	chr2	180115717	180116717	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3149.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	5.07263452425198	5.10967721187809	5.37049698790681	5.20342739742677	4.85610347021867	5.12567233736265	-0.249573903347888	0.510066022696292	0.840686100607057
Merged-chr1-39917678-3	chr1	39917171	39918171	+	819.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	L1MEc|LINE|L1	16758.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.41502246531032	4.30836931488309	4.19024744083074	4.65831205012834	4.51607541925234	4.7312241494031	0.797508339122123	0.0695780471588676	0.345200567201318
Merged-chr8-11003331-1	chr8	11002831	11003831	+	593.0	f0_balb.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-4519.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	2.53570475037113	2.18498901331451	2.45484672313284	2.06525691236772	2.04986967759674	2.13453324205704	-2.51231556271387	0.0123894778330894	1
Merged-chr11-102284829-4	chr11	102284310	102285310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-10.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	7.24026903374681	7.30374656167904	6.89798395978639	7.26136614875628	7.23055499437402	6.94151345744794	-0.014275725055701	0.956522325952496	0.989887454023164
Merged-chr7-121983251-4	chr7	121982755	121983755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1562.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	5.94185224614235	6.07021014600774	6.24585123361679	6.17357865897956	6.05112977028119	5.93747231791646	-0.0383097508248922	0.897188584989675	0.975961770901806
Merged-chr8-84842740-2	chr8	84842240	84843240	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_007591, exon 9 of 9)	exon (NM_007591, exon 9 of 9)	-2075.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	4.15623505463325	3.94219039997076	4.30909629637691	3.905479416307	3.58355985045162	4.33502124148616	-0.492662912297952	0.384776817941748	0.765926259647846
Merged-chr10-39456477-3	chr10	39455988	39456988	+	770.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86689.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.25438061487811	3.87319489722074	4.01964804530648	4.35772919012158	3.99246605916917	3.93551391151784	0.143467074293213	0.782658346435048	0.946657882199751
Merged-chr4-134534191-2	chr4	134533691	134534691	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029759, intron 1 of 6)	intron (NM_029759, intron 1 of 6)	905.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	5.00332283012326	4.88515329001058	4.96502708096076	5.38812721756427	5.40533615046936	5.239521745335	0.829240913571366	0.0199368525217042	0.161090078134198
Merged-chr9-56465496-4	chr9	56464986	56465986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	46867.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	4.01440191646833	4.04772261575843	3.81655707568723	3.75050380819183	3.7428832821892	3.7814904738338	-0.675123108685948	0.193208160708381	0.580390703326287
Merged-chr2-104595174-3	chr2	104594656	104595656	+	893.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037326, intron 1 of 1)	intron (NM_001037326, intron 1 of 1)	4672.0	NM_001037326	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	3.25031005487471	3.16723756134059	3.79701517075145	3.28829981482055	3.40543906563777	3.4243943328516	-0.203404184653254	0.755690526173263	0.939400440743942
Merged-chr19-3576996-2	chr19	3576496	3577496	+	818.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	4.55802599119278	4.62103919036808	4.49946990679601	4.74567750673537	4.44268491780662	4.60851554170387	0.0879257368689698	0.835539444943236	0.961771357710747
Merged-chr2-26130193-4	chr2	26129715	26130715	+	793.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE1|SINE|Deu	-7404.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	4.0099073041262	3.78565815091538	4.2647477533252	4.35040005105872	4.22509939315462	3.95332783522947	0.473345544952339	0.359936397900414	0.746219593510366
Merged-chr19-42171273-1	chr19	42170773	42171773	+	693.0	f0_balb.idr	intron (NM_177319, intron 1 of 12)	intron (NM_177319, intron 1 of 12)	706.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	6.21904127448111	6.6206449663648	6.01253532605439	6.03176410614041	6.24545663797497	5.81656012131026	-0.445961881533301	0.178332507952621	0.559402033136986
Merged-chr15-26360077-1	chr15	26359577	26360577	+	543.0	f1_balb.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51029.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	4.28217933499225	4.27391999244863	3.92700068233484	4.14841694075278	4.1848744539928	4.65619803754362	0.435846048636797	0.392059554989224	0.770871037868177
Merged-chr8-120664732-4	chr8	120664204	120665204	+	862.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	3408.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	4.86950682245533	4.87225824684565	4.86667600651437	4.60391387260504	4.46894522668337	5.06593748077509	-0.334656427342327	0.433187979668994	0.797713962870369
Merged-chr19-42778839-2	chr19	42778339	42779339	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362410)	promoter-TSS (NM_001362410)	-193.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	4.158063843625	4.28745740104673	4.52933570870067	4.11927616884318	3.80771074806934	3.98786535626364	-1.00724631011565	0.0440583242107162	0.26408334828737
Merged-chr19-55570054-4	chr19	55569533	55570533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	132171.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.25035840805476	5.2933314595838	4.88878007352103	4.77989163829157	4.6984674665563	4.79770868649488	-0.900496374152294	0.0209557862252602	0.166525552500377
Merged-chr11-120727313-4	chr11	120726775	120727775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347608)	promoter-TSS (NM_001347608)	6.0	NM_026428	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	4.31151263839125	4.44560590637056	4.77191344096225	4.63663188467728	4.47674857084088	4.21837591448319	-0.135588073426332	0.77147608130206	0.943614978016208
Merged-chr11-103267578-4	chr11	103267090	103268090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016896)	promoter-TSS (NM_016896)	-189.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	6.79729192431309	6.4222069870804	6.69980315881547	6.71027830777722	6.50260808666246	6.62980651114621	-0.0530552155024121	0.846598049453787	0.964071364038795
Merged-chr3-100531136-4	chr3	100530636	100531636	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57C2|LTR|ERV1	-41944.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	4.92667003690941	5.05328058066286	4.56823275191482	5.69221084534829	5.88333452059184	5.97662693494251	1.90283888077376	1.0595591922671e-06	5.68798717872008e-05
Merged-chr10-117721611-4	chr10	117721102	117722102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10844.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	4.55746276358277	4.32367117917964	4.35637103934619	4.28729819129714	4.35014547574885	4.2882804083306	-0.28256318003448	0.527346749943322	0.849922098680457
Merged-chr1-186117361-4	chr1	186116859	186117859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-49.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	7.51671884301996	7.91903563245444	7.1542530165051	7.47258942868729	7.52116139369488	6.80646088927179	-0.381793045387579	0.237353513686731	0.633755131625501
Merged-chr3-65530892-3	chr3	65530430	65531430	+	783.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 1 of 5)	intron (NM_178892, intron 1 of 5)	-1516.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.03763389036734	4.27693170052578	3.97435932981527	4.40700056283907	4.52240914830127	4.66728480822268	1.11105004680614	0.0189404699333804	0.155780864987209
Merged-chr11-87987575-4	chr11	87987054	87988054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	-21.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	7.02693245010875	6.99951355998912	7.12500732081322	7.22445515759487	6.86074978651636	6.98844190946593	-0.0254812728027774	0.91971729475495	0.982080783809915
Merged-chr4-155943739-4	chr4	155943214	155944214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-99.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	7.74577302805708	7.42332326235997	7.63048728593111	8.08786796566532	7.76464671454056	7.64011073170611	0.348845228260129	0.161731077411484	0.534869614040331
Merged-chr12-112592627-2	chr12	112592127	112593127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	3843.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	3.04909270087332	2.90341811512287	3.5077766504519	3.08975550545018	2.87966976912364	2.98382863017041	-0.820050143797807	0.254311502147929	0.651297476085736
Merged-chr19-6292776-2	chr19	6292276	6293276	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-13681.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	7.41974486680079	7.35926581685318	7.51083109160288	7.14015142103442	7.46808742931181	7.3953481240007	-0.123596004107665	0.605681632446128	0.883581756351046
Merged-chr1-38987686-4	chr1	38987215	38988215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-99.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	6.37907938947882	6.58613633309191	6.65753929541244	6.61636937653024	6.69825195201532	6.41951057849967	0.0807808253755859	0.76665457741114	0.942536715432526
Merged-chr12-55416289-4	chr12	55415770	55416770	+	966.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17445.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	6.78754964365237	6.92824349434554	7.00737919879944	6.86527834724169	7.22127323649424	6.91417737209428	0.171517012339338	0.510658740423827	0.841022022619749
Merged-chr1-54747946-2	chr1	54747446	54748446	+	833.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 9 of 27)	intron (NM_001081433, intron 9 of 27)	178441.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.92147926172641	3.08125331436435	3.06588732692664	3.0166001424575	2.79637537145111	3.30279573163867	0.108541298509122	0.877935290670464	0.971787895308199
Merged-chr12-82446745-4	chr12	82446233	82447233	+	986.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 21 of 23)	ORR1A4|LTR|ERVL-MaLR	135384.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.60161524890974	4.52772350103699	4.48344752521796	4.79535783064579	4.91462961678977	4.41372206162493	0.468791678754006	0.279763516810497	0.677411323093
Merged-chr19-43695866-1	chr19	43695366	43696366	+	544.0	f0_c57.idr	intron (NM_053103, intron 3 of 12)	L2c|LINE|L2	6177.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	3.15039903931111	2.9501503799591	3.25143591290279	3.2111372172186	3.08049605715367	3.09348009769291	0.0490477280937528	0.940557363123623	0.986852666940686
Merged-chr8-124723124-1	chr8	124722624	124723624	+	540.0	f1_c57bl6.idr	intron (NM_026855, intron 1 of 5)	intron (NM_026855, intron 1 of 5)	985.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	3.63416830755791	3.8138545078883	3.5471500480108	3.46708508134005	3.62814889127413	3.32426962824794	-0.657387719110005	0.270028390969376	0.667038426427379
Merged-chr19-6303836-2	chr19	6303336	6304336	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2621.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	3.96059793577468	3.40266951552225	3.6443253611894	3.96372720176003	3.74610721316245	3.92315919995277	0.589988762376664	0.310106090865038	0.705663939416346
Merged-chr8-126592846-4	chr8	126592353	126593353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164598, exon 1 of 2)	exon (NM_001164598, exon 1 of 2)	583.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.36291639429303	8.74313903771095	8.64682999899622	8.44979069925111	8.60583028788154	8.62468766227973	-0.0445682293089606	0.839626473358337	0.962784121274377
Merged-chr13-117025810-7	chr13	117025283	117026283	+	989.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081009)	promoter-TSS (NM_001081009)	-267.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.64334834850443	5.01637324550973	5.19002228619686	5.73222715355347	5.33501189704328	5.22074526145361	0.259956109701186	0.517173689786286	0.844527100635531
Merged-chr5-105655623-3	chr5	105655031	105656031	+	941.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44438.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.41670401299015	3.61031818149427	3.49347712810934	3.03159394068447	2.98878153798901	3.2316891256962	-1.85577662978239	0.00482019488165728	0.0597198891770308
Merged-chr2-35404664-2	chr2	35404164	35405164	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 8 of 8)	MTC|LTR|ERVL-MaLR	-7490.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	2.59693678713754	2.9836388034877	2.88821621466415	2.65249663026088	2.64325092041212	2.71754740239629	-0.866215138557127	0.257133541226325	0.654457620898992
Merged-chr14-20655041-5	chr14	20654554	20655554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021508, intron 2 of 5)	intron (NM_021508, intron 2 of 5)	1486.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	6.57277648267302	6.80800869969818	6.92434234963112	6.27705549833164	6.49773107367708	6.69687118828242	-0.437043654705316	0.120961003741809	0.465085864763572
Merged-chr2-156523209-4	chr2	156522707	156523707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24369.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.61065676641225	3.74526649107015	3.82133999056894	3.4539025357335	3.59693653709093	3.4179492897331	-0.803582934018862	0.161057115876776	0.533698004623889
Merged-chr9-40326607-2	chr9	40326107	40327107	+	713.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-5284.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.62150718593232	4.57299484926743	4.31898080175204	4.5376276211296	4.24632889309176	4.34128735459227	-0.357645036602916	0.426349721642495	0.793775990271191
Merged-chr16-23982625-4	chr16	23982107	23983107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-1324.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	5.54811758217189	5.46261395109167	5.32646041016273	5.2849169387939	5.4891711528117	5.07880327297753	-0.281242775302723	0.43045863615181	0.79626959019857
Merged-chr11-116006215-2	chr11	116005715	116006715	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 34 of 39)	intron (NM_001005608, intron 34 of 39)	6504.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	1.98741538964919	1.99354430102807	2.25780238618844	1.9228861270626	1.82190634012368	2.07580401649611	-1.15186449367571	0.241944434603389	1
Merged-chr13-73605969-2	chr13	73605469	73606469	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 2 of 16)	intron (NM_146047, intron 2 of 16)	1967.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	2.82045672253971	2.93654723854534	2.88403014954903	2.88471439175077	2.63907980685345	2.70622717013821	-0.698091932666138	0.340405404925898	0.730143400434979
Merged-chr2-28498638-4	chr2	28498131	28499131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139197, intron 3 of 6)	intron (NM_139197, intron 3 of 6)	1740.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	6.08121703912027	6.14783830809089	6.15297403667017	6.44247377279215	6.36851053959706	6.43003477443057	0.47513560878285	0.0804287991093073	0.375319360455793
Merged-chr2-59670477-3	chr2	59669966	59670966	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	23697.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.16943010251394	3.37170222020253	3.28183768408577	3.367309025295	3.00448723941747	3.17936987344804	-0.363800366164184	0.576449833186224	0.871585692229598
Merged-chr5-134394808-3	chr5	134394304	134395304	+	621.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 9 of 29)	intron (NM_001081462, intron 9 of 29)	61458.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	3.11346472774342	2.81618866582367	3.23470386482309	3.01956624945533	2.93996728616799	3.08238801311622	-0.222756369288906	0.748170139652632	0.936880860325556
Merged-chr9-7829937-3	chr9	7829486	7830486	+	708.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 2 of 7)	intron (NM_007465, intron 2 of 7)	6820.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	4.27618290028739	3.8905715242773	4.01765453496118	4.75157980116319	4.55293777402734	4.8203301547196	1.64294091878432	0.000606656512235936	0.012246775452749
Merged-chr6-43638411-2	chr6	43637911	43638911	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	L1MD2|LINE|L1	27867.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	4.18876553832292	4.43579422114792	4.31456455848449	3.96255620018476	4.35025929505658	4.15332740415047	-0.391186390647988	0.420227680514536	0.789521469804967
Merged-chr3-146499780-4	chr3	146499278	146500278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	-25.0	NM_027617	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	8.60299271236879	8.65629574074656	8.48147530626371	8.61790517454637	8.63356850815125	8.78191880569043	0.128135780482921	0.526673012972535	0.849587221577657
Merged-chr2-112259668-4	chr2	112259116	112260116	+	901.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172521)	promoter-TSS (NM_172521)	-325.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	3.61095841743997	3.93140056327153	3.64209019713138	3.68686317574294	3.8167441198466	3.91610844853043	0.210426102585347	0.701532654571916	0.921353558219906
Merged-chr7-49251193-4	chr7	49250683	49251683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	(T)n|Simple_repeat|Simple_repeat	4994.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.15718903864189	5.37889349348722	5.21540701307414	4.68882008459721	4.72017296156722	4.82469493266232	-1.11869770235648	0.00305956218397379	0.042721941635189
Merged-chr10-87853543-2	chr10	87853041	87854041	+	768.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-4724.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.51658729603203	4.42720777764672	4.3381301366845	4.57192224369436	4.84788889772854	4.54188246906639	0.580205048088497	0.179732813942564	0.561276907469273
Merged-chr13-58205199-4	chr13	58204678	58205678	+	787.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	10475.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	3.32895929393944	3.27072759432928	3.24292190117191	3.32642154300586	3.20201940759814	3.58385153006216	0.351155567398229	0.572346717431434	0.869819295413984
Merged-chr4-132971750-4	chr4	132971248	132972248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2347.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.23382782853216	5.01360787296987	4.83302315671042	5.11883210555113	5.3219183884178	5.22615198591355	0.373038116630801	0.320989090650223	0.714680187400013
Merged-chr6-89405189-4	chr6	89404681	89405681	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-42568.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.50405555152347	3.68859602396112	3.63439723759131	3.41251135983872	3.64048657640182	3.80369286090221	0.0467536032609041	0.934885566062232	0.985727573165395
Merged-chr15-5141985-3	chr15	5141499	5142499	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1862.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	4.79899120746514	4.79928008636575	5.03715371138702	4.80377642735487	4.66237726543183	5.00154079784835	-0.126768959348199	0.75128631346965	0.937817389828417
Merged-chr19-42780334-1	chr19	42779834	42780834	+	772.0	f1_balb.idr	promoter-TSS (NM_001346703)	promoter-TSS (NM_001346703)	-356.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	7.36509416633602	7.79073669311584	7.38447321728737	7.58910459927888	7.57325815023103	7.02479319764931	-0.151215068931117	0.592550360884433	0.878093150996829
Merged-chr1-64120701-6	chr1	64120187	64121187	+	837.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	702.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	8.06713155646104	8.07104067938988	8.01963242812626	8.19244554407531	8.47648024660508	8.01573696232243	0.277152974362721	0.228084634171076	0.623077135802944
Merged-chr10-25297132-4	chr10	25296651	25297651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	CpG	2012.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	7.27702111089339	6.97617143441048	6.74713646792829	7.13988386202608	6.71871237606713	6.59965227677027	-0.276796763750187	0.352742128395475	0.74027004513432
Merged-chr18-55341740-1	chr18	55341240	55342240	+	607.0	f0_balb.idr	Intergenic	Intergenic	-349149.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.84880609167547	2.85294075895491	2.90619630595942	2.62526929569339	2.7906302319228	2.60308582633135	-0.981210280238474	0.194495805641389	0.581822770611366
Merged-chr11-78984964-4	chr11	78984459	78985459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-35.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	7.2702164566297	7.01481478393184	7.05276107576801	7.15066734019866	7.26280592496516	6.9294937913743	0.0155884495744235	0.95093668079124	0.988550252808244
Merged-chr9-100643442-4	chr9	100642938	100643938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-10.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	7.3859977761198	7.25523212423707	7.28990328644557	7.29712984002907	7.10678827028712	7.31355468412599	-0.112051739249838	0.633496406763204	0.896059441151508
Merged-chr3-79542741-4	chr3	79542250	79543250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	24929.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.68437562255491	4.38946694763351	4.27854964785798	4.50142360225434	4.07731214221127	4.3476043011825	-0.395865543264292	0.406805171930081	0.781078274423029
Merged-chr19-12466292-4	chr19	12465792	12466792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172442)	TTS (NM_172442)	5513.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	7.22593298404606	6.58849188542645	6.84734719499177	6.839671306122	6.49001093301551	6.24186349316666	-0.569303986880328	0.0759337003992344	0.362682471891366
Merged-chr18-73502138-4	chr18	73501639	73502639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-70566.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	3.45720061290246	3.65634163200629	3.69903464965996	3.69967366139631	3.61306756235372	3.66545192559759	0.185022615663483	0.738404486522164	0.934032187674406
Merged-chr11-103253762-2	chr11	103253262	103254262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	13639.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.34587019462119	4.50088212001017	4.60044737122037	4.29381730924632	4.25363353460868	4.5493342821658	-0.30654605964504	0.493083455649013	0.831208279358962
Merged-chr3-54806561-3	chr3	54806069	54807069	+	937.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133231, intron 1 of 2)	intron (NM_133231, intron 1 of 2)	1222.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	4.523526425569	4.61962979385718	4.28605485185281	4.06156847778424	4.36746843384635	4.48609932978727	-0.455255597442678	0.330936819772062	0.722226411767471
Merged-chr13-74640079-6	chr13	74639575	74640575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030711, intron 1 of 18)	CpG	222.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	8.0344049960711	8.08264772009638	7.70892340893904	8.01243040688148	8.0823215779208	7.48233496441558	-0.0891712715725476	0.737827944686634	0.933858424870961
Merged-chr16-62786175-4	chr16	62785693	62786693	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178925, intron 1 of 5)	Lx8|LINE|L1	523.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	6.92283915025749	7.11929561347586	6.79880539727071	7.27480098446134	7.34575308530401	6.80960035782618	0.325701866904808	0.238286572417907	0.634951642748382
Merged-chr12-34504432-1	chr12	34503932	34504932	+	627.0	f0_c57.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	24457.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.7925774799653	2.86254068947231	2.63420015417046	2.75787822341999	2.89489989725222	2.95866992051666	0.505080731520074	0.492033760319602	0.830887387439085
Merged-chr2-71039883-4	chr2	71039369	71040369	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	15737.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.60638766979481	4.72791535813011	4.82031848822947	4.53461158294847	5.03940229495332	4.92124927713554	0.314506726417894	0.454721261280815	0.810532225390276
Merged-chr17-73302231-4	chr17	73301722	73302722	+	922.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97074.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	2.5988870386276	2.16558047532671	2.26093468952873	2.40137859565812	2.35657236128678	2.53494540703122	0.446840284370519	0.617621166128435	1
Merged-chr3-54709181-4	chr3	54708669	54709669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019995, exon 11 of 20)	exon (NM_019995, exon 11 of 20)	14046.0	NM_001358015	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	6.34094929350011	6.3100344249044	6.33094363309665	5.99970810498682	6.24903343888895	6.3527897704765	-0.202355684145839	0.475094336801664	0.821727753368561
Merged-chr7-88260488-3	chr7	88259986	88260986	+	741.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17599.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.35982821531109	5.62749318255372	5.3692142287062	5.39450272717011	5.69054731886447	5.57986586955053	0.191708372947266	0.574381452285721	0.870632540375594
Merged-chr3-90132922-2	chr3	90132422	90133422	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 9 of 39)	intron (NM_029937, intron 9 of 39)	28790.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	3.49385234451282	3.29160023721121	3.50759278707379	3.58302198984582	3.45108604128415	3.78031028986652	0.627843861779196	0.285530206412796	0.683065879339771
Merged-chr3-129831471-4	chr3	129831004	129832004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026578)	promoter-TSS (NM_026578)	-108.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	6.52392047248664	6.60253391117817	6.2622605552263	6.7629008751556	6.41497510812386	6.28041880192629	0.0446456376156133	0.879865183281929	0.972281466825891
Merged-chr5-21034678-4	chr5	21034184	21035184	+	975.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356590, exon 1 of 19)	5' UTR (NM_001356590, exon 1 of 19)	563.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.75615341589302	5.56673923919469	5.74892976903222	5.87421382595369	6.0537227396418	6.15279161656017	0.602718684954081	0.0500519322618588	0.284903624274507
Merged-chr2-122408644-4	chr2	122408113	122409113	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-32207.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	6.33181561834968	6.85537728126565	6.30230191428021	6.48053801296705	6.68385537146908	6.76624480759649	0.180334291413568	0.553080983401152	0.862070329440339
Merged-chr8-120436061-4	chr8	120435565	120436565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52801.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	7.06033320623558	6.80926627198624	6.63950433281428	6.9809294617189	7.1631887958209	6.41330887168242	0.0769417364198032	0.804724817505363	0.953651704501661
Merged-chr5-137662025-2	chr5	137661525	137662525	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178162, intron 5 of 11)	MTD|LTR|ERVL-MaLR	-16311.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	4.85176040201499	5.06502864106416	4.99050286750317	4.79678405485178	4.88349028342498	4.71519247296418	-0.365520962702837	0.346136613002886	0.734515828466387
Merged-chr12-69457281-1	chr12	69456781	69457781	+	564.0	f0_balb.idr	Intergenic	Intergenic	18269.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	3.5348665039095	3.32887146858619	3.2821830139613	3.18295441336781	3.36154470567917	3.11114307156088	-0.636053071377861	0.322412796046343	0.715889842636581
Merged-chr9-60795028-2	chr9	60794528	60795528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	586.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	4.02580635684276	4.02916657485984	3.81339576899842	3.4836897172238	3.33359972978022	3.61819177813398	-1.72659297751518	0.00250678960398029	0.0368213390454576
Merged-chr6-113740737-4	chr6	113740271	113741271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-90.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	7.8192161339087	8.08178378388569	7.51492932797872	7.55175469290358	7.77082891541366	7.38648575006529	-0.356506193892683	0.176100186498528	0.556287990375801
Merged-chr4-129827935-4	chr4	129827427	129828427	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7219.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.12302031562782	7.02306101907988	6.94802576817266	7.3401003200227	7.50645227554311	6.80671182220378	0.342211358287567	0.225655073542094	0.620676402041606
Merged-chr6-142779541-4	chr6	142779047	142780047	+	783.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	22861.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	2.07218261755156	2.03794624637531	2.26311325913775	1.88087562840696	1.9376756842868	1.94336047295558	-1.6891157544511	0.0873709467258674	1
Merged-chr7-88279722-4	chr7	88279201	88280201	+	966.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	B1_Mus1|SINE|Alu	1616.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.72138510204262	7.71149987542767	7.56824209030798	8.06236140332222	8.41524402477694	8.16621935695509	0.789597450783004	0.000531290044214099	0.011005123723915
Merged-chr11-21424514-4	chr11	21423999	21424999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53232.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	5.83077717747484	5.75683255420312	5.99303562903345	5.43895238303645	5.84734852628057	5.79793877049941	-0.264856219639945	0.417758752503905	0.788317729410249
Merged-chr16-22009340-4	chr16	22008852	22009852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-132.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	8.1343945845704	8.05609076052756	7.1975021410948	7.77419010861933	7.74855803841528	7.54918061669201	-0.25013216838479	0.41137188412522	0.783877099438722
Merged-chr17-17587566-4	chr17	17587087	17588087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36902.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.79165876743352	7.04462628657933	6.97869306688704	6.95895955300925	7.26631038867395	7.07630034501804	0.26023514771677	0.307546909961084	0.70366516854451
Merged-chr15-100403548-5	chr15	100403193	100404193	+	949.1099849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 9 of 16)	intron (NM_008732, intron 9 of 16)	19362.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	5.51192482523069	5.6756176848874	4.66011963110627	4.85197118727014	4.64806323733346	4.58896706921675	-1.3979078814172	0.00256082326332327	0.0373629637199022
Merged-chr10-28425575-3	chr10	28425084	28426084	+	799.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359356, intron 7 of 30)	MTEa|LTR|ERVL-MaLR	-242776.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	2.54476871889905	2.65086411507349	2.66187885209581	2.33248335646466	2.48708754941111	2.61237757948407	-0.827615389352428	0.30565780457603	1
Merged-chr2-79696676-4	chr2	79696168	79697168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11112.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	6.56894258620567	6.21283522008154	6.15960096794148	6.17695618052946	6.16879028281678	6.13249133814029	-0.290152299039192	0.323492277211632	0.716720241831544
Merged-chr2-152343541-4	chr2	152343063	152344063	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175093, intron 1 of 3)	PB1D10|SINE|Alu	497.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	4.12719642981851	4.11243993040549	4.03932957787357	4.36836096112216	4.26779048401058	4.10942960097611	0.448054952202564	0.341377153615703	0.730816878642537
Merged-chr2-122376468-4	chr2	122375971	122376971	+	932.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7553.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	6.65790230815591	7.16706308095249	6.99448919879365	7.06432970200957	7.30026800756363	7.19187643461481	0.352700777212711	0.191111527085834	0.577729625640621
Merged-chr12-33157494-2	chr12	33156994	33157994	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	9808.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	4.73016135812135	4.52086012845094	4.65192650206413	5.27080736033403	4.78928191097385	4.98712954346426	0.880575498815139	0.0333793217680838	0.222961114688827
Merged-chr9-108050883-2	chr9	108050383	108051383	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_032543)	TTS (NM_032543)	1619.0	NM_001357682	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	2.87824469903878	2.77160358487817	2.79070255941956	2.82628155456884	2.82428950187058	2.98400612811835	0.305150614643183	0.665003597101172	0.907721942545399
Merged-chr16-38731103-4	chr16	38730606	38731606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11153.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	3.92864688040037	3.62671159493192	3.69342461304395	3.79217741920859	3.88265654993404	3.65465732072062	0.0873727676336467	0.873082456374207	0.970371929331986
Merged-chr5-117494414-7	chr5	117493873	117494873	+	933.480957	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80371.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	6.35837900906449	6.31675169236194	6.46692252060347	6.39801697445657	6.67371406419771	6.27646834429575	0.155333403867461	0.582576738555153	0.87378634860748
Merged-chr5-74793718-3	chr5	74793285	74794285	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90882.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.76856500512744	3.91597977603518	4.09193181861184	3.30659716172709	3.0564023871641	3.53717243327283	-2.4042755368534	0.000254596509409582	0.00610327466290767
Merged-chr11-22840752-2	chr11	22840242	22841242	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	B3|SINE|B2	18993.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.92434171496871	4.02269335017147	3.94217931030987	4.1792374837773	3.69839026605623	4.0117301448	0.0252249924141006	0.961725993595594	0.990669330070468
Merged-chr6-72933163-4	chr6	72932664	72933664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25068.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	5.38042497006226	5.09834097087553	4.98777166440679	5.47913730208105	5.65512840755256	5.80413177805274	0.915166017941089	0.0110072040047223	0.107536389670651
Merged-chr19-12806413-3	chr19	12805913	12806913	+	949.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 2 of 8)	intron (NM_134152, intron 2 of 8)	7834.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	6.11715711168643	6.00170079088883	5.80534627776682	5.83261032364067	5.42855480988946	5.40226717840847	-0.748924936346506	0.0253616255445944	0.188654580575238
Merged-chr18-44825598-1	chr18	44825098	44826098	+	549.0	f1_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3067.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	3.36100972511212	3.61297803358656	3.46644349155101	3.40092589582306	3.58757584492731	3.78965173799733	0.401805234618993	0.49719339450056	0.833500500620649
Merged-chr5-110809390-3	chr5	110808887	110809887	+	949.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347394, intron 1 of 27)	intron (NM_001347394, intron 1 of 27)	694.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	7.35559837910794	7.45795591882352	7.49666544869836	7.38485634466176	7.11579590460264	7.22966107392017	-0.281810526785131	0.232038991230026	0.628274393357457
Merged-chr10-83634702-4	chr10	83634195	83635195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	13969.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	4.33453313302663	3.79471949027162	3.82988292056861	4.00588283613972	4.08543225733744	4.10399429168124	0.132879202174449	0.803496998928557	0.953504424667369
Merged-chr14-20709290-2	chr14	20708790	20709790	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027996, intron 1 of 25)	intron (NM_027996, intron 1 of 25)	1738.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	3.09033987366632	3.15893995117683	2.85917506727204	2.99764134457646	2.81435667876234	3.11645426299931	-0.325641126357296	0.644447706950816	0.900210434145893
Merged-chr5-142401926-4	chr5	142401426	142402426	+	888.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199068, exon 1 of 9)	exon (NM_199068, exon 1 of 9)	429.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	6.74335116164314	6.1742767113469	6.72210587982927	6.95094958359934	6.24822712068885	5.89396782647546	-0.194234206077011	0.613030516178881	0.886978895339216
Merged-chr19-18670050-3	chr19	18669576	18670576	+	761.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-704.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	4.98902231674539	5.11018705222998	5.00165858536876	4.76223370349871	5.12305307266959	5.1340757307903	-0.0391788772878575	0.918607645216583	0.981830247255695
Merged-chr5-91962917-4	chr5	91962417	91963417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073442)	promoter-TSS (NR_073442)	35.0	NR_028429	381650.0	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	8.69685818998845	8.60882589476278	8.60762943835194	8.58011319198982	8.56954393808601	8.34826283985787	-0.181939727567664	0.37492685370759	0.758255684886886
Merged-chr17-71087160-1	chr17	71086660	71087660	+	628.0	f1_c57bl6.idr	intron (NM_001083934, intron 18 of 36)	B3|SINE|B2	67603.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.01191552696867	2.71012915008974	3.10453630830693	3.35133376462544	3.34114339533508	3.40330055846295	1.87761066290168	0.00882607426792545	0.0923059288779675
Merged-chr5-74957457-4	chr5	74956957	74957957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8263.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	5.47241229126664	6.08784873923664	5.87591575816349	5.09887859433399	5.32414277837309	5.58869619990847	-0.923559617621045	0.0133878739246708	0.12309151530652
Merged-chr9-99568962-4	chr9	99568453	99569453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166138)	promoter-TSS (NM_001166138)	-54.0	NM_028768	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	6.89710976873168	7.07652878606901	7.13108307930577	7.07360799898353	7.16358433480211	6.78419998329484	-0.0123058809056773	0.961949397166473	0.990691557558141
Merged-chr2-119242489-3	chr2	119242000	119243000	+	866.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016907, intron 2 of 10)	intron (NM_016907, intron 2 of 10)	5140.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	2.1224615614771	2.1408898910322	2.40429697140268	2.34420175402543	2.35562403233355	2.54040160289469	1.29625825285344	0.142305705612863	1
Merged-chr2-166711104-4	chr2	166710611	166711611	+	837.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	2721.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.36167401221938	7.12409008855579	7.1947178845843	7.64642854376376	7.73210901205481	7.34612699522897	0.535743118011289	0.0297944625657538	0.207911576750355
Merged-chr6-65115046-4	chr6	65114551	65115551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	29679.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	5.25777160516929	5.72359840351474	5.46956485253292	5.24236648100121	5.32938576860803	5.44511319262918	-0.319312873400198	0.369777845322486	0.754342005045842
Merged-chr18-41954190-3	chr18	41953706	41954706	+	600.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3012.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	3.807551708536	3.26978393601816	3.62541501702003	3.11324591459121	3.34970354336563	3.25403631064623	-1.30279372259824	0.0482390325540919	0.278450160304365
Merged-chr11-70845233-2	chr11	70844733	70845733	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291141, intron 1 of 16)	G-rich|Low_complexity|Low_complexity	472.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	7.07292664582714	6.81686928612212	6.95464341528912	6.94500132045932	6.63342645092283	6.87239298100161	-0.207164157589607	0.427375786676177	0.794314723207389
Merged-chr17-26583760-2	chr17	26583271	26584271	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	22259.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.79805931463729	3.82380548812114	3.70076050170543	3.62958593455614	3.41669916608522	3.43666089506447	-0.987136613367309	0.0805652842577896	0.375560731791894
Merged-chr18-66479437-2	chr18	66478937	66479937	+	815.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	20833.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.56404503120649	3.31321970213705	3.44054071581303	3.41740918911948	3.56518938490597	3.72015194096733	0.457729273378648	0.436842632314625	0.799681606793859
Merged-chr4-126438061-4	chr4	126437583	126438583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8541.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	7.33507531334254	7.22754484568239	7.06478095083939	7.45670900118356	7.60053019852771	7.29845008784015	0.362186805090081	0.135831637967697	0.492611326858478
Merged-chr4-88714370-4	chr4	88713855	88714855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	8153.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	6.4037593851627	6.79791729577764	6.41116406390973	6.29825584557879	6.33917724711916	6.20846038763605	-0.442177449647368	0.124382825363078	0.471935660788902
Merged-chr5-65247473-4	chr5	65246982	65247982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153391, exon 28 of 37)	exon (NM_153391, exon 28 of 37)	47786.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	6.86024078921644	6.94778046731305	6.9379102561737	6.90257788656702	7.16155535786051	7.08880645640417	0.218348034519888	0.374825539368368	0.758128885281656
Merged-chr9-115746641-4	chr9	115746132	115747132	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-162823.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	4.08907942487595	3.83473130706817	4.02442342974931	4.60540771846077	4.52272549589075	4.29104623724549	1.37523289774441	0.00408353905393834	0.052769547693757
Merged-chr15-103260564-4	chr15	103259920	103260920	+	971.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	5.44470806864095	5.43728403280341	5.52897663672876	5.9875066734622	5.99981855765439	5.78428678876825	0.856096486919912	0.006044500176755	0.0701367690290657
Merged-chr1-177338871-3	chr1	177338381	177339381	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90114.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	3.80092229008469	3.86821329534423	3.95744789492147	3.85329899375598	3.69451271872049	3.93050472810856	-0.162178961481508	0.754719052275809	0.939073511009908
Merged-chr11-95851050-4	chr11	95850535	95851535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-7782.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	7.67201821033269	7.09549805756095	7.35481446083758	7.39295994161539	7.3485531441819	6.9701474594868	-0.208159909039089	0.458871572140902	0.813236440920954
Merged-chr17-67347328-7	chr17	67346834	67347834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.66036899368502	8.73021209444393	8.30574275032714	8.30696023552048	8.62374330882289	8.04842438746592	-0.314973814153934	0.218221611232032	0.612414823722149
Merged-chr1-91034324-4	chr1	91033834	91034834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	PB1D9|SINE|Alu	-19110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.35528821812062	7.22880712782948	7.2763304052859	7.14343789407646	7.22881231355998	6.99277156459644	-0.232642976449943	0.327474777715199	0.719679924571505
Merged-chr11-98943993-2	chr11	98943493	98944493	+	993.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	4282.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.44824647675618	6.39332405843823	6.15860355542053	6.62966187931893	6.64580912331453	6.65635832629521	0.473586216481141	0.0781915570313245	0.369227800775351
Merged-chr7-102567964-3	chr7	102567463	102568463	+	766.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	4.00821147632363	4.30921367291922	3.79606397093912	3.88389540760165	4.21203733899705	4.1248622756793	0.053977314013533	0.918952005073092	0.981874294629856
Merged-chr6-91489873-2	chr6	91489373	91490373	+	745.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009531, exon 16 of 16)	3' UTR (NM_009531, exon 16 of 16)	16122.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	3.43756563325856	3.86847595153327	3.58485919446534	3.26455348032695	3.11345871100206	3.60335163451832	-1.16453209223881	0.0721487113880235	0.352785448502948
Merged-chr1-135669999-4	chr1	135669503	135670503	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50060.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.53785437740518	5.31094029890658	5.32182535087395	5.07915413675858	4.7871601321268	4.77608774949184	-1.05810605182747	0.00489850855419316	0.06035098658923
Merged-chr1-165433070-1	chr1	165432570	165433570	+	608.0	f1_balb.idr	intron (NM_028759, intron 1 of 18)	RMER3D-int|LTR|ERVK	27393.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	2.97698660309933	3.23994475179705	3.03756765790475	3.18884218982441	3.14328417121738	3.28511146716975	0.47109054524542	0.472551837912494	0.820550293768681
Merged-chr14-25694777-2	chr14	25694277	25695277	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134084, intron 1 of 5)	intron (NM_134084, intron 1 of 5)	607.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	4.48553872918763	4.43306494376539	4.56365056812924	4.48411969976349	4.32411639294858	4.62943454496697	-0.0414153598970663	0.923906302162961	0.982825133592799
Merged-chr5-130025996-3	chr5	130025516	130026516	+	823.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1635.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	3.92268207320728	4.07821555667265	3.86856986136353	3.89889373621967	4.2167126757837	4.51343957568529	0.748096814397629	0.152253047372803	0.520263755512759
Merged-chr11-69368165-4	chr11	69367662	69368662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	1264.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	7.65663034629387	7.86767429504843	7.71117094023297	7.89234890568532	8.05664303271347	7.59814067262702	0.174263098965333	0.469283316694292	0.818943090863774
Merged-chr1-154118572-4	chr1	154118071	154119071	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82616.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.47681837132623	6.32040879463123	6.41121312017173	6.18860132977723	6.38718118836325	6.41558936418275	-0.115144711150557	0.674610272039934	0.911852710156386
Merged-chr11-99179105-4	chr11	99178595	99179595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-24018.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	5.93278251733894	5.64774943948783	5.3623400365988	5.63381340237158	5.59166976465821	5.52137997284289	-0.178225866278673	0.60498841225302	0.883330817515343
Merged-chr4-132806384-4	chr4	132805886	132806886	+	840.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-10022.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.65625369508985	7.45929493360514	6.97803438262977	7.9595041253553	8.42741916738232	7.48965227130232	0.892926676994464	0.00601554918703637	0.0699080749657713
Merged-chr2-153529040-13	chr2	153528406	153529406	+	807.0448610000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 1 of 10)	CpG	1065.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.13844404430817	3.83168617863108	3.95140633783355	4.44171126546361	3.89962988734825	4.02222438776687	0.464259113865887	0.380784386543379	0.762800321589017
Merged-chr7-140102331-4	chr7	140101816	140102816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001286217, exon 1 of 6)	exon (NM_001286217, exon 1 of 6)	125.0	NM_001286217	69064.0	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	4.57096304613395	4.3363181131517	4.20697481989592	4.57238333363173	4.38097050448243	4.41549272266217	0.17836531846182	0.693505205823496	0.918960880648635
Merged-chr10-79681009-2	chr10	79680509	79681509	+	945.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	4.48445458988228	4.65863808669731	4.62958612066769	4.45844576858454	4.53975225959942	4.76999393664421	-0.00916544859583054	0.9827257016079	0.996084390562607
Merged-chr11-83969249-1	chr11	83968749	83969749	+	863.6666869999999	f0_balb.idr	intron (NM_194341, intron 1 of 19)	B3|SINE|B2	4818.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	3.54822431112006	3.40742336737321	3.45226734036144	3.61778696881661	3.45244731934932	3.63128243833715	0.339706931187243	0.553213846793669	0.862212814939829
Merged-chr7-144580694-2	chr7	144580194	144581194	+	758.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010175, exon 2 of 2)	exon (NM_010175, exon 2 of 2)	1742.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	3.27298592000229	3.34218865366976	4.02258995340629	3.39139711737621	3.37131282952281	3.42990594272392	-0.673873070440518	0.304369669278214	0.700883185755923
Merged-chr10-81129904-1	chr10	81129404	81130404	+	556.0	f0_balb.idr	Intergenic	Intergenic	-6367.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	6.2911195760292	6.2079335514496	6.4022287675255	6.33496724985152	6.37369439307409	6.46161755407589	0.150590378138318	0.579234658398024	0.872437865758865
Merged-chr10-80822541-2	chr10	80822041	80823041	+	812.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4115.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	5.07390475085006	4.85451005248362	4.96499242306318	4.63318520099223	4.74388107086536	4.77183913662855	-0.564756086091881	0.149194731993815	0.51537803021029
Merged-chr16-95724379-4	chr16	95723873	95724873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A1|LTR|ERVK	21966.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.23062203357341	5.11968792285499	4.74028243052797	5.11695931188576	4.94922644744435	5.07740787792588	-0.029388372871834	0.940062125875679	0.986782000249854
Merged-chr12-72535381-4	chr12	72534905	72535905	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-952.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	3.71096938750334	3.61839889693884	3.52308263976971	3.71706537082549	3.49420648866937	3.594467481283	-0.0751006949285012	0.893588621527276	0.975265071347118
Merged-chr9-75410134-4	chr9	75409635	75410635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	-49.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	8.70724814899127	8.81897045012007	8.44335622841655	8.66877355057981	8.80147811867627	8.24211859471486	-0.0975413127093837	0.69363129356121	0.918960880648635
Merged-chr6-99522810-4	chr6	99522309	99523309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-12329	-1816.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	7.66735057162367	7.63620591843989	7.52480444174975	7.92248457300533	7.81700431914669	7.55121331656817	0.237889668028798	0.305387510474857	0.701545621920761
Merged-chr7-80396709-2	chr7	80396209	80397209	+	874.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011046, intron 6 of 15)	B1_Mur1|SINE|Alu	6103.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	2.54865209755895	2.64661286720901	2.83853371460761	2.82636855264632	2.59609144424949	2.6666205111756	0.110405328755077	0.88465009174431	1
Merged-chr15-55381851-4	chr15	55381357	55382357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	74107.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	5.76655115613662	5.76016878997338	5.95451504511703	5.42341683850132	5.59893053459235	5.4133904314131	-0.616703443188891	0.0563874709501661	0.306090437036705
Merged-chr6-56714809-4	chr6	56714314	56715314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-91.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	7.60255834386148	7.72862450151329	7.44883646284212	7.56020362696544	7.71508033893519	7.4307163864235	-0.0339145021983687	0.88559539690866	0.973636976161493
Merged-chr10-118162903-1	chr10	118162403	118163403	+	924.5	f0_balb.idr	intron (NM_001162904, intron 12 of 14)	intron (NM_001162904, intron 12 of 14)	21116.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.50785298856631	3.49685523521419	3.70825597032173	2.89438403467011	2.65591008934197	2.94769503337958	-4.34712788845197	8.5755834431877e-06	0.000350298059470183
Merged-chr5-136198359-2	chr5	136197859	136198859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 1 of 5)	B1F1|SINE|Alu	595.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	5.7522656711263	6.08520698622677	5.86043378354508	5.921177119679	5.95410831400161	6.0162522555132	0.0887845945973286	0.771008839706309	0.943565600102578
Merged-chr19-53312663-4	chr19	53312129	53313129	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	1184.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	7.31660236822652	6.83582065642044	7.06265002272422	7.13599760572497	6.83855840513568	7.22981786947102	-0.0248877613685225	0.928285711592427	0.983802612059568
Merged-chr9-59755391-4	chr9	59754872	59755872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	4198.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	6.47617517161735	6.50659844586608	6.60379267171293	6.38806406398214	6.66070589453264	6.62995163147414	0.0651892825844112	0.807233195564874	0.95453117889869
Merged-chr7-132690935-3	chr7	132690422	132691422	+	577.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	B4A|SINE|B4	80279.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	2.31454630779006	2.43953624443141	2.49748329536472	2.21999468170283	2.14378290558463	2.50960788772768	-0.808847668127974	0.358226317276959	1
Merged-chr7-30194696-1	chr7	30194196	30195196	+	1000.0	f1_balb.idr	intron (NM_009795, intron 1 of 10)	intron (NM_009795, intron 1 of 10)	457.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	7.47797600977531	7.9613003848114	7.87563195305719	8.08133847863758	8.26754630296641	7.86727511949653	0.426654306359776	0.0937323501288936	0.407826887132659
Merged-chr5-142458923-1	chr5	142458423	142459423	+	850.0	f0_balb.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5008.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	6.62586250822516	6.90540573112069	7.2011862093043	6.86908406736811	7.20450604471541	7.14196942328933	0.240087577067743	0.394162747049603	0.77206906441863
Merged-chr1-131038310-4	chr1	131037793	131038793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18448.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	3.8521843314286	3.7578150742963	3.62195196765446	3.98989235590768	3.98229419764604	3.69473336715956	0.475789972748981	0.377399669964262	0.759821716915152
Merged-chr11-61762116-4	chr11	61761575	61762575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164242)	promoter-TSS (NM_001164242)	13.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	7.653181955816	7.24032488822123	7.00440656199837	7.34002663976806	6.92651955351003	7.04872009871593	-0.327726005039249	0.257232472930595	0.654510415497797
Merged-chr1-120253958-4	chr1	120253472	120254472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	11308.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	4.83417734460407	4.51921997342488	4.86418595764315	4.62963134716481	4.62751110411328	5.24353620852126	0.25112239123387	0.575724152460172	0.87137539535607
Merged-chr4-130822040-2	chr4	130821540	130822540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 4 of 4)	intron (NM_011520, intron 4 of 4)	29503.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.82613035235174	3.70847077268911	3.87751928685438	3.77788603277819	3.74532694556065	3.52000607537924	-0.362120065406759	0.507239072654276	0.838904804247997
Merged-chr1-156002012-4	chr1	156001488	156002488	+	905.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-28733.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	5.2804150717859	5.05089694988335	5.17642215130314	6.33866023195207	6.52830889549795	5.78418569066201	1.9917030247963	2.41428014647265e-08	2.01290002432561e-06
Merged-chr8-11219515-3	chr8	11219003	11220003	+	983.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 33 of 51)	intron (NM_009931, intron 33 of 51)	-93302.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	3.78729437135718	3.78661766362364	3.61019079976898	3.23659831876879	2.96214532032209	3.68103027676995	-1.5279865541008	0.030125352968356	0.209517750734785
Merged-chr19-3374711-2	chr19	3374211	3375211	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 12 of 18)	intron (NM_013495, intron 12 of 18)	-14146.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	3.95500159600243	3.49995546248647	4.25407794424693	3.77089523006496	3.62158476804127	4.28045695892059	-0.0525908759822035	0.932183432375994	0.985074623409702
Merged-chr12-16883449-1	chr12	16882949	16883949	+	607.0	f1_balb.idr	Intergenic	Intergenic	-11529.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.93481469827079	4.8886782607193	4.9047578363115	4.57840240246832	4.65003673810311	4.82404894451351	-0.522910135239238	0.184191079998336	0.56784629064474
Merged-chr2-25240926-4	chr2	25240432	25241432	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1035.0	NM_026415	67859.0	Mm.46431	NM_026415	ENSMUSG00000036731	Cysrt1	2310002J15Rik|AV023762	cysteine rich tail 1	protein-coding	2.91962053082338	2.75009531150311	3.11094174394487	2.75887228843476	2.66977134698239	2.71127106656357	-1.12104485912249	0.131709303280026	0.48529880667016
Merged-chr16-20362493-2	chr16	20361993	20362993	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 23 of 29)	intron (NM_013790, intron 23 of 29)	-37089.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	4.89925129915755	5.12144106549359	5.14791952668715	5.00713314854622	5.03495211240749	5.04426876486077	-0.0602603746289253	0.870571365458362	0.970084781962666
Merged-chr10-82818137-4	chr10	82817515	82818515	+	935.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038042, intron 1 of 2)	B1F2|SINE|Alu	5892.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	4.57726092082576	4.76416236167939	4.36253694954814	4.9164566255979	4.69497370246858	4.56772152833523	0.354918561953162	0.415383013831098	0.786402808010238
Merged-chr7-107668734-4	chr7	107668240	107669240	+	959.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 1 of 23)	intron (NM_001357437, intron 1 of 23)	3262.0	NM_001357436	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.16191929487666	3.34772140731168	3.2090727959041	3.01222842564987	2.99338864477894	3.10630915556711	-0.926843997761648	0.155957173923971	0.526082804064774
Merged-chr14-50837443-3	chr14	50836943	50837943	+	771.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 37 of 55)	exon (NM_009351, exon 37 of 55)	29527.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	6.15962047384678	6.27227021199838	6.35736795423759	7.04338378191948	7.46056895867498	6.962648256584	1.44968031357585	2.17455237110779e-07	1.40919122815527e-05
Merged-chr6-31189216-2	chr6	31188716	31189716	+	626.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	29258.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.25310429715715	3.2449713194817	3.35315374938182	2.99917605983603	3.05115023881849	3.2035495514625	-0.861073251384671	0.180910511393535	0.56305619831836
Merged-chr12-102381839-4	chr12	102381294	102382294	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MER63A|DNA|hAT-Blackjack	58019.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.03505237878497	6.56146612091204	7.05902574269404	7.08158284769834	7.04267994296056	6.55328923036395	0.0336596025826232	0.91082538918622	0.979969158480567
Merged-chr5-115542872-4	chr5	115542362	115543362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-16605.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.97480947384028	3.59705487784477	4.01116449855343	3.89234242146755	3.41094340395443	4.24986087542083	0.0651726576421684	0.916049594009877	0.981201223155309
Merged-chr13-42052364-2	chr13	42051864	42052864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	CpG	343.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	8.61475524891578	8.25276476913959	8.0096105980499	8.46867942140936	8.22227207000381	8.18605494417996	-0.0335765590975589	0.89435532804329	0.975478229649209
Merged-chr14-61311112-2	chr14	61310612	61311612	+	821.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_177337, exon 2 of 2)	exon (NM_177337, exon 2 of 2)	1359.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	5.3477210829647	5.86029920412316	5.51429284326904	4.65929216165318	4.60978530280711	4.81459448943652	-1.91573555835535	1.01125888315177e-06	5.47817898107373e-05
Merged-chr18-60710218-3	chr18	60709759	60710759	+	642.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	MIRc|SINE|MIR	17307.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.24332113858141	3.25651917680654	3.3644264197923	3.05203906348815	2.8445992098473	3.03794734476632	-1.41740960078092	0.0357576874714547	0.232435134274611
Merged-chr9-25532999-2	chr9	25532499	25533499	+	725.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	51402.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	5.68160274131979	5.80331820375675	5.85605013692828	5.93133932185665	5.77954123584691	5.86888656603966	0.143464273847413	0.636973052921019	0.897256731014262
Merged-chr10-37141167-4	chr10	37140686	37141686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2260.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.80289674069586	6.72937533790862	6.98273753316164	6.77576397346574	6.84584727379392	7.18701255456578	0.160828531793659	0.54706639588965	0.859181606032086
Merged-chr5-147051065-3	chr5	147050561	147051561	+	972.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	25511.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	5.44789817151878	5.21399198095522	5.25605439932416	5.07919254656337	4.99170594765625	5.08677691185435	-0.542471244296175	0.129578664040697	0.481574946513837
Merged-chr2-113440874-4	chr2	113440367	113441367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285459)	promoter-TSS (NM_001285459)	-197.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	7.34257877572733	7.5598947692503	7.2790595536203	7.24103879566396	7.40224199704285	7.21733333454076	-0.163172590735369	0.496444954030493	0.833046085446241
Merged-chr4-21755243-4	chr4	21754746	21755746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290420, intron 11 of 11)	intron (NM_001290420, intron 11 of 11)	11965.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	3.58533329204828	3.46599505519434	4.08954315795178	3.94286946484016	3.69122314359527	3.93330309828204	0.399194376505364	0.494767076754542	0.832098209532918
Merged-chr14-31204451-2	chr14	31203951	31204951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 2 of 21)	exon (NM_022656, exon 2 of 21)	2375.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	3.11002027336394	2.96811066403466	3.27370725147293	3.10897692615128	3.14634814371787	3.29002801123175	0.274717973107683	0.673343508973734	0.91137087629305
Merged-chr5-143731069-3	chr5	143730575	143731575	+	842.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	1205.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	5.69678955972832	5.51916668504192	5.62523611437148	5.99419151817425	6.08646703699294	5.71601766639935	0.608295028483947	0.0551438719865508	0.301829450089259
Merged-chr18-70472055-2	chr18	70471548	70472548	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	-406.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	5.24868230549286	5.24587347388993	5.08767460516066	5.64343864783056	5.48474029452479	5.07941316666662	0.459673259598962	0.213520520748795	0.606555443326131
Merged-chr9-66131111-1	chr9	66130611	66131611	+	616.0	f0_balb.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4500.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	4.79188812578438	4.81955066103554	5.25864198558228	4.69883601302405	5.09191774226427	5.45770940438187	0.312129956328029	0.475051203475869	0.821727753368561
Merged-chr2-72369494-4	chr2	72368978	72369978	+	885.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 5 of 19)	intron (NM_023057, intron 5 of 19)	83777.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.43590391397565	4.43660889884289	4.48771134474059	4.99696671434108	4.951152334367	4.91378651205723	1.1845882201196	0.00308210147759348	0.0429789676131387
Merged-chr7-110002228-4	chr7	110001727	110002727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 2 of 2)	RLTR49|LTR|ERVK	4419.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	5.66336011579978	5.67405694906621	5.78492211919509	5.47665052904051	5.7308507502238	6.0059291027013	0.0780884605306262	0.813588686784517	0.955940138311315
Merged-chr4-6191062-4	chr4	6190565	6191565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026534)	promoter-TSS (NM_026534)	-40.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	4.0064254114025	3.78987408088784	3.73921837818731	4.34782484606457	3.97131479203543	4.02365647978411	0.800872640483894	0.126817308181208	0.475882320697303
Merged-chr9-15280783-2	chr9	15280283	15281283	+	914.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-916.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	6.33437626249346	6.87751555561182	6.57072582318068	5.99803054756724	6.6319597918854	6.35827607678247	-0.407564803276199	0.21424428326557	0.607441279998006
Merged-chr4-102568776-3	chr4	102568291	102569291	+	892.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-1269.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.54204509747732	4.64846662972703	4.74834088458891	4.43452364877696	4.68790891033802	4.88443117697623	0.0752792466428852	0.859334941195766	0.967267211164924
Merged-chr8-46756603-2	chr8	46756103	46757103	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	16858.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.52069477532927	3.60957199330554	3.77048430499303	3.60256249299097	3.43715987341521	3.63893451960123	-0.265825788378891	0.63803103984305	0.897380718500389
Merged-chr13-63038062-3	chr13	63037561	63038561	+	760.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 3 of 15)	intron (NM_001289926, intron 3 of 15)	73168.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.89960969531622	3.00827644653143	2.93517559861437	2.65728411833231	2.91629446089041	2.82482582336201	-0.698749421870304	0.33650906690986	0.72653508721162
Merged-chr1-135268288-4	chr1	135267774	135268774	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 4 of 9)	intron (NM_001159624, intron 4 of 9)	-9802.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	5.38288474343079	5.47092241955659	5.34817527951531	5.48102062156411	5.19491086968073	5.55674371197441	0.00710264990349507	0.983651371651863	0.996404603343051
Merged-chr13-23521929-3	chr13	23521428	23522428	+	935.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	-9116.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	2.46603927585501	2.52635434495914	2.64974570131271	2.57222258056604	2.53074531280616	2.47012120679669	-0.115082479075719	0.882856891813102	1
Merged-chr18-82867749-7	chr18	82867249	82868249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11852.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.52945507833308	6.81168983280517	6.65508854308332	6.69358698185617	7.0344141510015	6.55879850633969	0.185548488705996	0.511435636560843	0.841400291314575
Merged-chr19-6362728-2	chr19	6362228	6363228	+	621.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-962.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	6.8844901621625	6.77001748410592	6.35368751248889	6.86233271973073	7.18467770379085	6.41444714433488	0.270099637121935	0.404863794374255	0.779791650050306
Merged-chr5-64934441-3	chr5	64933949	64934949	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-891.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	4.42967940676536	4.26241301842552	4.46418377352231	4.57568740101577	4.57765141701665	4.44542186802412	0.392755984462438	0.363334639380094	0.748994025844601
Merged-chr9-48821626-4	chr9	48821129	48822129	+	949.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	14316.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	4.0588905210874	4.10977561788233	3.81229730139671	3.67594824259815	3.8636963926128	4.03222938386149	-0.446983950945276	0.396523953412852	0.773652887901204
Merged-chr9-59746548-2	chr9	59746048	59747048	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	5S|rRNA|rRNA	4101.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	3.46424040595881	3.52391537588562	3.69278565053334	3.87564044657154	3.73090420843039	3.86275170280151	0.900486200279445	0.0996625196223323	0.421057066907084
Merged-chr6-136930960-4	chr6	136930432	136931432	+	946.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301308, intron 2 of 4)	intron (NM_001301308, intron 2 of 4)	8595.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	3.33339776718036	3.37178173386333	3.47492990935713	3.89321140347228	3.61581070432434	3.6026071547869	1.16124861554661	0.0448973115234624	0.267206601619645
Merged-chr5-63828940-4	chr5	63828444	63829444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	16449.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	6.51732583595743	6.76548486879465	6.9443685955621	6.94373096527965	7.1436614017755	7.24676245162937	0.566419048695217	0.0338257423984431	0.224913886326487
Merged-chr11-106218253-2	chr11	106217753	106218753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361643, intron 1 of 16)	intron (NM_001361643, intron 1 of 16)	1327.0	NM_028074	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	3.90996811359979	3.74121664010156	3.82155108566303	3.96499453771001	3.63568100111744	4.12665395228419	0.277998450689356	0.608488481360321	0.885006356798728
Merged-chr3-90245466-4	chr3	90244973	90245973	+	953.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1961.0	NM_030080	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	5.18401260203967	5.47281369716203	5.01846233430759	5.77359529036899	5.87919085159868	5.87150400907494	1.10561924431661	0.00153817892878631	0.0251707288305835
Merged-chr13-18781432-4	chr13	18780936	18781936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	64144.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	6.42510193260486	6.71113445189191	6.69212544295638	6.33284251154654	6.57892240461249	6.44657872391846	-0.243864988872913	0.376053592552697	0.758951282467405
Merged-chr12-108644694-4	chr12	108644133	108645133	+	724.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	8880.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.54107603036857	4.63694310282968	4.96628673732244	5.12568937822842	5.09481269527184	5.03094489844324	0.827484768533553	0.0362764381519378	0.234320667997544
Merged-chr7-4445664-4	chr7	4445174	4446174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290409)	promoter-TSS (NM_001290409)	-17.0	NM_001290411	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	4.67717243830946	4.35163523889957	4.82101462237906	4.84029667303257	4.68854734192036	4.57425827995625	0.204848648820697	0.636194256104747	0.897032166554798
Merged-chr1-165644558-4	chr1	165644059	165645059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10018.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.04478864154483	5.78331050288433	6.17060307583935	5.80021599643364	6.27054129984227	5.84575965215048	0.00209616907025758	0.994934228730013	0.998961028701257
Merged-chr9-16313465-4	chr9	16312957	16313957	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	ID_B1|SINE|B4	64774.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	5.37097042837817	5.48520587689248	5.04323138867796	5.12267553101408	5.14286057432129	5.1447642105181	-0.383451491522498	0.293307186444517	0.690221391260893
Merged-chr1-172478185-4	chr1	172477689	172478689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029612, exon 4 of 4)	exon (NM_029612, exon 4 of 4)	2829.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	3.89454171606931	3.77570533759913	4.00457125078406	3.96568995338639	3.98327661702486	3.87716628523341	0.177526077643246	0.725874949437329	0.929738509502044
Merged-chr7-142340262-4	chr7	142339767	142340767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31992.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	6.20289694601381	6.00551123953518	6.13482683656651	6.86122708106075	7.14080695121445	6.95426604646656	1.40721858511632	1.76459235161005e-07	1.17471190946005e-05
Merged-chr7-105396348-3	chr7	105395838	105396838	+	737.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242363, intron 1 of 12)	L2c|LINE|L2	3716.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	2.97918030892657	3.02108170551547	2.90250251494557	3.0814871266195	3.10207057331289	3.26932888850965	0.799794388080923	0.230662356580836	0.626381219532661
Merged-chr2-132101014-4	chr2	132100512	132101512	+	905.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	RLTR19-int|LTR|ERVK	44096.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.06606888796814	5.81293841602127	5.71505337790437	6.03807529653424	5.85173746455333	5.57541549249318	-0.0644991259205176	0.844466331212415	0.96373428957366
Merged-chr19-6015422-6	chr19	6015010	6016010	+	787.896851	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007600)	promoter-TSS (NM_007600)	-263.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	5.3644773519196	5.49700768555887	5.4571438447038	5.34519981780808	5.1266169134054	4.90825647411936	-0.586229838382155	0.105527501798752	0.433616413317065
Merged-chr4-133660212-2	chr4	133659695	133660695	+	947.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	12452.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.98883797624344	7.05413204924949	7.23696641424343	6.60565638050431	6.84097566850504	6.90857647237207	-0.464433229889675	0.0702521935260627	0.347189985560543
Merged-chr2-145807443-2	chr2	145806943	145807943	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	21327.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.62553057584399	6.18795063293204	6.32877046840031	5.73373666951558	5.8594695860557	6.29385721491169	-0.712737988907638	0.0289201431299138	0.204062955753961
Merged-chr5-118246170-3	chr5	118245683	118246683	+	610.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081236, intron 1 of 4)	intron (NM_001081236, intron 1 of 4)	956.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	2.89715738861714	2.97172577805589	2.84979002076078	3.02960489773182	3.05228792359222	3.16051632955742	0.792490877003226	0.242637381293525	0.639785480506262
Merged-chr5-125409037-4	chr5	125408533	125409533	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-19016.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.42507434981263	4.4108645257989	4.39336683373549	4.07501218295905	4.42796482502067	4.76800334483429	0.0924871356728349	0.846775410811167	0.964111312125802
Merged-chr2-150868882-1	chr2	150868382	150869382	+	558.0	f0_balb.idr	intron (NR_151505, intron 1 of 12)	L1M4|LINE|L1	-26312.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.91102539531208	5.02660157485777	4.91283434575102	4.80684515920567	4.6720139190443	4.53343899085074	-0.618631454315962	0.119702721571111	0.462446774275774
Merged-chr16-52059737-4	chr16	52059256	52060256	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28207.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	6.33743308247907	6.53028082967552	6.20211604038789	6.64934624808998	7.17098081731053	6.34984162818137	0.658956033516051	0.0439524579412467	0.263771808177083
Merged-chr8-35387130-4	chr8	35386630	35387630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177741, exon 2 of 2)	3' UTR (NM_177741, exon 2 of 2)	11389.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.3377581827281	5.06575476200169	5.01396993049384	5.49467831004072	5.45836161116162	5.0037986472291	0.396628536799422	0.300505884698397	0.697311691851564
Merged-chr11-103400214-4	chr11	103399703	103400703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	L1MB7|LINE|L1	12461.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	8.07921975486517	7.97062947129461	7.52959442341521	7.88169796141053	8.07198478419893	7.4094079215137	-0.0877845005102243	0.757589423998891	0.939883186830738
Merged-chr3-88149198-4	chr3	88148705	88149705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6833.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	5.61156752216442	5.94124153024876	5.92087542432199	6.01964025315196	6.03417967377664	6.21763665476292	0.450418648322453	0.143591298565386	0.505883003261439
Merged-chr6-127266216-4	chr6	127265722	127266722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41745.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	5.29174300062785	4.94562547844603	5.27660597950226	5.23586397637489	5.00744211561661	4.89094222310016	-0.249672549649357	0.515698099024953	0.84387216239357
Merged-chr13-100865602-2	chr13	100865102	100866102	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32175.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.56112907245797	4.27397826957339	4.27707910116566	4.55858888115007	4.13391887000364	4.0470273645386	-0.292897595247688	0.552214992790348	0.861546661145201
Merged-chr8-69086383-2	chr8	69085883	69086883	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-2353.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.2878060271902	4.25412705259005	4.19661412402876	4.36674454384912	3.84266826334054	3.80027685568086	-0.603389309869669	0.251725535375811	0.649173703610206
Merged-chr13-35740334-3	chr13	35739846	35740846	+	680.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 3 of 9)	intron (NM_009881, intron 3 of 9)	-1056.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	3.12052224749122	3.03779473719316	3.11365441665444	3.39563790217166	2.85996657863471	3.46301005208669	0.719453108744661	0.307165990082663	0.703275671477878
Merged-chr4-33290304-4	chr4	33289796	33290796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20015.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	5.41839310795924	5.64610918129956	5.80059178662996	5.85107056886939	6.03249991991687	6.08807277373648	0.665925407987539	0.0363794749636266	0.234681937057411
Merged-chr19-37544182-3	chr19	37543681	37544681	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6237.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.67484000921261	4.43395903961006	4.27098293007009	4.38222472891463	4.35419249325801	4.08891822954424	-0.487237865117022	0.300384825533808	0.697298854445564
Merged-chr14-120478266-4	chr14	120477769	120478769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-192.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	8.38132559609994	8.48264314821743	8.06845667337111	8.15043929773663	8.34086868820012	7.94768349818109	-0.231942331424029	0.334346721635564	0.724883973366998
Merged-chr9-14807437-4	chr9	14806931	14807931	+	732.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310728, intron 9 of 18)	MTC|LTR|ERVL-MaLR	22777.0	NM_018736	17535.0	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	2.78007620198076	2.74602206183893	3.19577346127829	3.0295046710292	3.16301463501872	3.37214928499839	1.25760082760308	0.0848583635789614	0.385758802798497
Merged-chr12-84762677-4	chr12	84762185	84763185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10427.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	8.24238904138922	8.37256195389569	8.08325432493365	8.30934431728156	8.61751449412555	8.17426120592217	0.203301421259737	0.387608331623948	0.767697654208451
Merged-chr15-100633656-2	chr15	100633156	100634156	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	1903.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	4.3423271689604	4.23810301963601	4.35396719506485	4.62322143985699	4.73474053588443	4.67312898604981	0.928611109224634	0.0289024903943612	0.203962210222543
Merged-chr11-90231803-4	chr11	90231296	90232296	+	974.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER103C|DNA|hAT-Charlie	-17680.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.23246329918654	5.31677859334939	5.4118749557537	5.01476528221575	4.8094128087431	5.10495302816144	-0.724768059689711	0.0476794578159739	0.276602686045566
Merged-chr5-122715949-2	chr5	122715451	122716451	+	640.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310718, intron 2 of 10)	intron (NM_001310718, intron 2 of 10)	8407.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.43737135621943	3.59810254726632	3.45131758709527	3.61538644115021	3.47306927095906	3.52269110930078	0.131708828603984	0.818113517140103	0.956842917576288
Merged-chr8-125640331-4	chr8	125639843	125640843	+	784.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-29475.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	3.80680284982502	3.68704241638911	4.20901837833549	4.08098924027251	3.86633811732094	3.75468799499172	-0.0014803003012415	0.997854922623557	0.999572789544564
Merged-chr10-120848922-3	chr10	120848422	120849422	+	968.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-8707.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	3.46608754017404	3.37336586709167	3.18083690249343	2.944131816772	3.06999007421491	3.00684849962049	-1.48971011538942	0.0278132553447332	0.199087064023633
Merged-chr9-48388638-3	chr9	48388142	48389142	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172921, intron 2 of 8)	RLTR19D|LTR|ERVK	26601.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	3.53912824408406	3.44946281208623	3.59286532906965	4.007665039118	4.14107316380326	4.52335864787965	2.28818051310329	5.04340960738979e-05	0.00159460562784359
Merged-chr12-52525730-2	chr12	52525230	52526230	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	9653.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	4.66769422083953	4.84521169558455	4.75147381496379	5.01484714145257	5.22046304364663	4.60530019572699	0.507029209258894	0.227582244645815	0.622793639824014
Merged-chr9-57836954-4	chr9	57836456	57837456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2722.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	5.26705092055928	5.32369230265879	5.36321252752588	5.52289712776325	5.72348861143238	5.75399191207569	0.682236186750145	0.0381605004532005	0.241721903297039
Merged-chr6-71632286-3	chr6	71631786	71632786	+	954.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 1 of 25)	CpG	400.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	7.42560885908884	7.53610112239975	7.25613080908629	7.46777308665725	7.40271213014558	7.55883922563261	0.0829302520414441	0.721827404324128	0.928606209603791
Merged-chr17-83513119-3	chr17	83512503	83513503	+	631.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	1330.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	4.85964309932266	4.79929362021148	4.80455842612217	5.39435348469587	5.59572921659589	5.47976067399665	1.39200346495574	0.000106250392632755	0.00298599991622145
Merged-chr8-84686217-4	chr8	84685733	84686733	+	869.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	1629.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	5.17316659434626	5.38045202292261	5.61006589716263	5.00890159257273	4.97678168321836	5.25532385760296	-0.639813728722515	0.0851890931210649	0.386382076850973
Merged-chr14-120832452-2	chr14	120831948	120832948	+	899.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-78746.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	5.57822063428098	5.56030285370157	5.39647015991498	5.78227755291771	5.53029379378416	5.49119430380398	0.166719302899701	0.614472591395089	0.887471974324838
Merged-chr11-62103642-4	chr11	62103148	62104148	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029936, intron 1 of 12)	MLT1G3|LTR|ERVL-MaLR	26624.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.61785301240476	3.61333129500957	3.52779699168218	3.31022178776085	3.22981997589404	3.54502430266132	-0.872294854814089	0.143358756717043	0.505400107113741
Merged-chr4-137603946-4	chr4	137603452	137604452	+	898.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	9780.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	5.35006033312348	5.32004983954401	5.55212902365347	5.5161714375697	5.5218458960981	5.83884563171444	0.421571859203019	0.213111501010373	0.605842142465242
Merged-chr7-28437142-4	chr7	28436631	28437631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-316.0	NM_022024	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.8353612061342	7.72061025658176	7.55271187158934	7.60661848752008	7.82628622791829	7.72197460005512	0.0150544456583485	0.947543813918476	0.988008807662239
Merged-chr5-105415684-4	chr5	105415201	105416201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033550)	promoter-TSS (NM_001033550)	-74.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	7.1790684061136	7.22057552141278	6.92602347885397	6.89252970911117	6.64766299757754	5.96239927656836	-0.845447617884612	0.0112228819709855	0.109092705962823
Merged-chr9-44965613-4	chr9	44965098	44966098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346698)	promoter-TSS (NM_001346698)	2.0	NM_001346698	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	7.08383528276295	7.36891799719756	7.15152002159669	7.2234389136458	7.36698393354061	6.87631402537674	-0.0406275461396356	0.878368936036624	0.971848664619312
Merged-chr2-165955478-2	chr2	165954978	165955978	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-37159.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.46970362216925	7.14011170882442	7.22020935848907	7.47044405563418	7.7604986923478	7.17767242564417	0.317502397551926	0.240562354949996	0.637600439407184
Merged-chr17-25134632-2	chr17	25134132	25135132	+	852.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011930, intron 1 of 24)	intron (NM_011930, intron 1 of 24)	1241.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.59743888534245	4.59642830009005	4.33150066665698	5.0447954035801	5.04145444725241	4.50045144609783	0.866192067214992	0.051920652450599	0.290923478054508
Merged-chr7-139388900-4	chr7	139388428	139389428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-181.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	8.26610832749421	7.98388877516577	7.65461736801626	8.35248881978573	8.0008182060346	7.69174348701426	0.0705184744725692	0.803668511145858	0.95351077179348
Merged-chr11-62846636-2	chr11	62846136	62847136	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	-487.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	3.32159084034992	3.28624675441498	3.23537098606833	2.99777668034493	3.35895757578837	3.2494893659086	-0.27471367814955	0.672297329921845	0.910756996322765
Merged-chr2-25366178-3	chr2	25365669	25366669	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	-506.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	5.53580314457697	5.67223767839311	5.40178442619017	5.1121866620333	5.16328870202378	5.1385572791917	-0.810389706539375	0.018629253206474	0.154285149876011
Merged-chr6-54947438-2	chr6	54946938	54947938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 3 of 11)	ID4_|SINE|ID	24223.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.14705419644833	6.17594348924653	6.37496682318783	6.28145792282169	6.51032322673859	6.71473388432059	0.458482909437521	0.111276801251101	0.445599888276702
Merged-chr3-118064144-2	chr3	118063644	118064644	+	965.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195208.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	4.44784903156935	4.4035815940572	3.8416009164672	4.21966015541085	3.95446784258024	4.36191454214505	-0.226571042039426	0.670318834405391	0.910029595108128
Merged-chr7-28385499-2	chr7	28384999	28385999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	-6271.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	7.98627735970376	7.71465453276095	7.81323316361762	7.85050318133906	8.16209763023861	8.04655813031016	0.262733261700815	0.253283350099517	0.650690079813536
Merged-chr15-73090371-4	chr15	73089888	73090888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-24.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	8.52224319608057	8.70407733366013	8.26201521978404	8.39819716732849	8.681794310028	8.35520665600059	-0.0316485912789829	0.893158558641842	0.975210713351106
Merged-chr17-85019109-4	chr17	85018591	85019591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-9256.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	3.89346839724839	3.97605052765438	4.16222098511417	3.8144814589475	4.02329710624035	3.85016762686413	-0.310940865915094	0.544199467694744	0.85762513130825
Merged-chr15-28412704-2	chr15	28412204	28413204	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	208938.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	4.16297285570597	4.33928224634459	4.20247630288125	4.16321907274691	4.36872567048216	4.35978246101095	0.166083157366803	0.718174914497817	0.927293456311605
Merged-chr13-88765876-3	chr13	88765383	88766383	+	906.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-55589.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	2.11816420841161	2.1364416141931	2.19131205898943	2.4283014259957	2.44804906680944	2.52956496071615	2.37666091363513	0.00994967531093849	1
Merged-chr2-90542849-4	chr2	90542347	90543347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37800.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.35236451418221	6.9605687785267	6.39827468809962	6.98610030838079	6.99545728962264	6.73920050168403	-0.0894262723986641	0.782759553302446	0.946725248356613
Merged-chr7-43919363-2	chr7	43918863	43919863	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14408.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	4.85081273899701	4.97003912968679	4.6453426173015	4.5605419470684	4.3046585439445	4.35781366614393	-1.03040345090619	0.0163936989745831	0.141356155883639
Merged-chr8-128687141-2	chr8	128686641	128687641	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	intron (NM_010578, intron 1 of 15)	1487.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.09880636060423	5.93454861063085	5.79821967511162	6.24970278375668	6.35356214801076	6.01272765266489	0.452704835592749	0.133991886167681	0.489407702218533
Merged-chr4-119950410-3	chr4	119949905	119950905	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	135727.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.61184820904273	2.46829938427873	2.81681625514561	2.46850875895855	2.3942524561718	2.77355527046525	-0.483853490468419	0.553813715808062	1
Merged-chr9-70833793-3	chr9	70833291	70834291	+	723.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101017.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.322129925211	6.23264671542654	6.83959988118357	6.86557644808983	6.44538396107797	6.56204795685563	0.246166381864712	0.433526503300195	0.797815674529737
Merged-chr9-63731605-4	chr9	63731095	63732095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	26399.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.76034804208626	5.63790386481197	5.41524211711904	5.67396757236696	5.47038458882938	5.59774658834015	-0.0801696512082512	0.808474403528102	0.954683711776353
Merged-chr2-145870398-1	chr2	145869898	145870898	+	799.25	f0_balb.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-32843.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.5825033237871	3.61593893371298	3.91260940052269	3.57110344804106	3.41854829145737	3.53411585484698	-0.697851404254263	0.223133993521391	0.617957508168678
Merged-chr16-31944786-2	chr16	31944286	31945286	+	969.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	3735.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	2.24545998232239	2.36423005031976	2.42380839508379	2.52034548440857	2.25771340867989	2.68397580421561	0.927770898044128	0.277454321207998	1
Merged-chr7-101620575-2	chr7	101620075	101621075	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39414.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	4.56044778616517	4.26973021228469	4.52278894774121	4.70597402607354	4.53200669677334	4.70853348688729	0.472942541619853	0.272491487808311	0.669749152678636
Merged-chr12-12289824-4	chr12	12289329	12290329	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27690.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.48891523685058	5.412603994253	5.23479198359193	5.90883273577214	5.81290516179731	5.98902200421542	0.937050970561451	0.0038514360394165	0.0504836625658109
Merged-chr4-32249127-4	chr4	32248639	32249639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168296.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.86337313062178	6.56132829183087	6.21809464963435	6.63225022168356	6.74817962438175	6.42575040359424	0.046915540594464	0.877220814541672	0.971507742080987
Merged-chr13-58543379-4	chr13	58542892	58543892	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67485.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.59989220814455	4.54144427497303	4.39419860199386	4.75462231048156	4.76632110996935	4.26852322895347	0.2628939627993	0.560389316358874	0.865228127283998
Merged-chr10-117710763-4	chr10	117710261	117711261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-3.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	7.78559817347891	8.09484659729917	7.81994813848425	7.86283889832061	7.78627096552112	7.88440537672062	-0.0980020223465767	0.664161212851247	0.907535709790147
Merged-chr10-60360925-3	chr10	60360426	60361426	+	680.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	14075.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.93865569287976	5.10319573457306	5.0754665214346	4.6138151430399	4.5733336107961	4.86322056316577	-0.816369970821802	0.0385278975450172	0.243197488918661
Merged-chr11-70451386-2	chr11	70450886	70451886	+	666.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025397)	promoter-TSS (NM_025397)	-545.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	4.60644509377974	4.55078029255532	4.86053092746224	4.40655090134197	4.71895993434613	4.85512258818976	-0.00159458655155766	0.997052258555702	0.999305289467698
Merged-chr12-12270692-4	chr12	12270172	12271172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	8533.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.69490161540248	7.81250050994353	7.45634163400627	7.48839688832994	7.69470203843373	7.47087669446341	-0.159075431826973	0.505461579993264	0.838131669576059
Merged-chr12-3237385-4	chr12	3236878	3237878	+	992.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015551, exon 2 of 7)	non-coding (NR_015551, exon 2 of 7)	1587.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	5.94843096516157	5.63735977943521	5.84504921098542	6.40232159264538	6.31786727414289	6.22592649208358	0.866127190609645	0.0034722551627109	0.0469177342609367
Merged-chr4-156210145-4	chr4	156209659	156210659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5768.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	6.37370761662862	6.59249493109296	6.16991439755037	6.21952133651185	6.47855736576709	6.02107149880259	-0.217642003929913	0.478805793672407	0.823891137932924
Merged-chr11-119057020-4	chr11	119056458	119057458	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16045.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	6.45190774142012	6.42200072757866	6.20198792785091	5.91458444385208	5.7619271706066	5.84484730562823	-0.909649814066509	0.00171418622050075	0.0274454506514194
Merged-chr2-148698841-4	chr2	148698350	148699350	+	850.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019632, intron 9 of 10)	intron (NM_019632, intron 9 of 10)	17730.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	4.14695709479592	3.98397384966616	3.84710634467929	3.73896505303111	3.58627030371932	4.10812970743656	-0.569685653377043	0.301360804234816	0.698077163741839
Merged-chr10-80099196-2	chr10	80098696	80099696	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	1991.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.52788920138914	4.5525661935814	5.04318147330339	5.14590353856629	5.521212628087	5.0391573568467	1.18334798751792	0.00498848269053043	0.0611223189093883
Merged-chr8-46552891-2	chr8	46552391	46553391	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027973, intron 1 of 12)	B1_Mus1|SINE|Alu	822.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	5.99764983862173	6.15919649218	5.70084744541985	6.18844432813823	6.07857409611697	5.79204096146465	0.10312400963535	0.748724627767922	0.937087780077821
Merged-chr4-127078052-2	chr4	127077552	127078552	+	789.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104366, exon 1 of 16)	non-coding (NR_104366, exon 1 of 16)	669.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	5.3911313036898	5.4475855910357	5.75227139964038	5.59497339363466	5.76761020073093	5.68722725874166	0.299751328575624	0.364009226939321	0.74943226864296
Merged-chr11-52100666-2	chr11	52100173	52101173	+	697.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1849.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	6.35542128269794	6.17767083154592	5.76784516066896	6.00947831422938	6.35683636613429	5.7457606635156	-0.0968561717191123	0.780922379918774	0.946078518476608
Merged-chr2-33406829-2	chr2	33406329	33407329	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276332, exon 2 of 2)	3' UTR (NM_001276332, exon 2 of 2)	24495.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	4.13862365298518	3.52769485007981	3.79222378125855	4.49349593035689	3.89472449964721	4.02336887771461	0.916374971219902	0.119580092704619	0.462189722861664
Merged-chr9-96365606-4	chr9	96365117	96366117	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1186.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.44500796705672	4.25594056104238	4.01133066724055	4.62262284738957	4.93115400458582	4.43996492402798	1.07482419757536	0.0257699163770559	0.19034737699974
Merged-chr4-55514906-4	chr4	55514406	55515406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	17569.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.18283496212647	2.93964748503826	3.03011538048298	3.06591350223709	2.85627932869691	2.85430105718213	-0.589805578838606	0.397304578005122	0.774186958204669
Merged-chr8-77421267-4	chr8	77420757	77421757	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95799.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.85787343702946	3.97036529343744	3.79097165314769	3.51069758974678	3.58950040946842	3.41478749947116	-1.25057651116143	0.0272221104705634	0.196503238127739
Merged-chr16-23270803-2	chr16	23270303	23271303	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-19667.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.83113523996657	4.31794359664296	4.97838265099533	4.29948157717333	4.1534910458886	4.37370123059685	-1.14977555404908	0.0160934263666696	0.139417159928979
Merged-chr7-118799739-1	chr7	118799239	118800239	+	682.0	f1_balb.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55874.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	4.35244401603125	4.22657847759846	4.40543931321076	4.68420694044173	4.46756070660463	4.47300825985548	0.561587072644417	0.199595951490402	0.588163754351147
Merged-chr4-149296229-1	chr4	149295729	149296729	+	568.0	f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	MTA_Mm|LTR|ERVL-MaLR	11469.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	3.45988364962977	3.32127227627989	3.32823962641639	3.2259699329631	3.36268989862815	3.45457345163873	-0.0952297308105041	0.874785218358279	0.970780587478737
Merged-chr9-14751947-8	chr9	14751450	14752450	+	904.7152710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010242, exon 1 of 1)	exon (NM_010242, exon 1 of 1)	172.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	5.1167359809963	5.11737185523452	5.2194057703875	5.12797865089931	5.04343881067741	4.73334939268948	-0.334719676159119	0.377918603310145	0.760222685045705
Merged-chr10-69213124-4	chr10	69212627	69213627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	-29.0	NM_001331193	320700.0	Mm.396529	NM_001331193	ENSMUSG00000090622	A930033H14Rik	-	RIKEN cDNA A930033H14 gene	protein-coding	8.13285768022487	8.23213860644613	7.85169828492205	8.04691177173066	8.14301218915328	8.04837050284889	-0.010181905821316	0.963801857921843	0.991188506370911
Merged-chr1-153486347-2	chr1	153485847	153486847	+	901.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 1 of 27)	B1_Mus2|SINE|Alu	1313.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	4.4997680299776	4.87640993017286	4.62191701954673	4.92803311632656	5.02785213463155	4.68969092290245	0.492921136610094	0.239293140065592	0.636076529360692
Merged-chr11-23416725-3	chr11	23416227	23417227	+	950.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190401, intron 35 of 79)	L1MC4|LINE|L1	81312.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	3.36666008607188	3.50301437410001	3.52887357474305	3.52790959194372	3.80103366327999	3.54516095409081	0.617627666650033	0.2850547220156	0.682615285045444
Merged-chr11-79890338-2	chr11	79889838	79890838	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72049.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.00309624233761	3.9215663501887	3.97168142704507	3.75033613769787	3.44895331588087	3.74163025487186	-1.05357837217605	0.0528083645241702	0.29413077784976
Merged-chr5-96980253-4	chr5	96979747	96980747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17442.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	7.38747028132581	7.35975177709792	7.10213468591163	7.32488314300628	7.48110218868921	7.502006159801	0.207834945253276	0.383468467221309	0.764932855957392
Merged-chr6-124493520-2	chr6	124493020	124494020	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 1 of 5)	intron (NM_181344, intron 1 of 5)	407.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	5.33829106633913	4.98279203163068	5.11499337912293	5.52525815375926	5.30130089711909	5.43541240371134	0.527242890566285	0.14371712815537	0.506028730682277
Merged-chr2-70986967-4	chr2	70986465	70987465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	(CA)n|Simple_repeat|Simple_repeat	31409.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.38567690487592	6.22974394038324	5.96859537605599	6.31043346875043	6.16774303028928	5.92990167526193	-0.106441241028403	0.728021545231001	0.930382686769792
Merged-chr4-45407784-4	chr4	45407294	45408294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	972.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	7.36630348012758	7.55245837094814	7.17022145941139	7.77419181626071	8.0064099605065	7.22800029346136	0.49766032947395	0.0851198985831506	0.386252608791229
Merged-chr14-45220500-7	chr14	45219949	45220949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	CpG	732.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	7.73580009711135	7.47049277797385	7.39975827491025	7.86928058164995	7.84943258644292	7.63127583998157	0.351491410450553	0.138918352273006	0.497943722067999
Merged-chr16-95708350-4	chr16	95707845	95708845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	5938.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.5242072346388	8.62532467635407	8.17507298142566	8.23983841495323	8.44141828288756	8.21682083977987	-0.216899869141584	0.350362993977359	0.738366841617277
Merged-chr10-121033469-3	chr10	121032928	121033928	+	779.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	-576.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	1.89475567449611	1.70630877726695	1.79183479697896	2.02756668122167	1.9941322511944	2.27717832658917	2.7589355086353	0.0157126105451161	1
Merged-chr9-72968572-4	chr9	72968003	72969003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 4 of 6)	intron (NM_001163725, intron 4 of 6)	9718.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	7.25242396135198	7.11764366985552	6.53028044488704	6.67400437954206	7.02696718705901	6.71498419364385	-0.295053601102585	0.334809842167124	0.725198429760335
Merged-chr1-75209850-2	chr1	75209350	75210350	+	578.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	928.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	5.19543962734798	5.61464713810774	5.55105751918333	5.36872245578346	5.28653322529637	5.44450431054072	-0.198370123693084	0.573740555176648	0.870292198441646
Merged-chr1-37872702-2	chr1	37872202	37873202	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037918, intron 1 of 1)	intron (NM_001037918, intron 1 of 1)	496.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	4.13943597082294	4.14619363735743	3.98484657340119	3.88899993449231	3.71731554034707	3.85117878552777	-0.862762038767234	0.0883449125126763	0.394515294389243
Merged-chr17-3114645-1	chr17	3114145	3115145	+	1000.0	f0_c57.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-327.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	7.46863624150616	7.91186698731829	7.22029502877602	7.3807942640332	7.3579819688825	7.10922025575215	-0.415411071770943	0.138260501175804	0.496960021384664
Merged-chr2-48924967-4	chr2	48924476	48925476	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149356, intron 8 of 13)	intron (NR_149356, intron 8 of 13)	24291.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	4.95692494974824	5.42480720983366	5.59902799258135	5.16641632535043	5.38268489549837	5.58338997224434	0.0718054553715081	0.853668513169707	0.965752330271851
Merged-chr2-4593642-4	chr2	4593130	4594130	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	33876.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.41109926785609	3.44026717331058	3.70119050003646	3.50448016786185	3.6286857500039	3.72070489898706	0.366261665431933	0.522571865735386	0.847663852239783
Merged-chr17-25015951-4	chr17	25015449	25016449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-137.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	7.93896407944896	8.17061605709181	7.67723811976704	7.78711054644847	7.99568685584624	7.75202887978402	-0.140138091431445	0.566797089264418	0.867634455258659
Merged-chr10-80095577-2	chr10	80095077	80096077	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	5610.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	2.80586001245712	2.46827919872108	2.79734679409861	2.55707672300677	2.36216916614775	2.81144639017635	-0.615867589970939	0.460755346734211	0.814723494835218
Merged-chr2-164943687-1	chr2	164943187	164944187	+	566.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-4532.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	3.51050240812814	2.87245956279715	3.30415818010605	3.38985035861688	3.20014021373175	3.26150360913625	0.104584954741201	0.882177801623228	0.973040782065611
Merged-chr14-54360991-7	chr14	54360500	54361500	+	981.0285640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026936, intron 1 of 9)	CpG	159.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	8.35554482464588	8.69526685138033	8.36681609616667	8.31007324054104	8.48216422837076	7.91058101854293	-0.30828068641721	0.223369038710663	0.618087468987021
Merged-chr11-44519168-9	chr11	44518798	44519798	+	990.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166553)	promoter-TSS (NM_001166553)	-79.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	7.74670508830874	7.6476176376891	7.770788767276	8.05189192086184	7.93969171611687	7.77572395481496	0.301550505231331	0.172167885449577	0.550749681454482
Merged-chr14-103477404-4	chr14	103476907	103477907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35934.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	6.69314018644156	6.89495706035381	6.81872899958729	6.8997068446373	7.15595382364638	7.3896890752934	0.540631782479449	0.042077588882484	0.256855110830734
Merged-chr8-18845529-2	chr8	18845029	18846029	+	595.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	-750.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	5.5995386753667	5.54490711977518	5.32194211897297	5.56780555941807	5.67897051802795	5.13987508354418	-0.00691667313915345	0.984728821686381	0.996719449619623
Merged-chr16-91478320-4	chr16	91477826	91478826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6889.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	6.83996845104133	6.37819105499266	6.55183697238686	6.70553835423678	6.70332402310965	6.81872240999337	0.210165953752341	0.448513070696435	0.80725470300829
Merged-chr11-103032646-2	chr11	103032146	103033146	+	648.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	RSINE1|SINE|B4	4103.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	6.27214734455861	5.97157081780386	5.97922512415121	6.09254646190592	5.81712697928041	6.06298681936946	-0.169685248883021	0.580531820723551	0.872884157869997
Merged-chr4-41407573-3	chr4	41407092	41408092	+	700.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024241, intron 6 of 12)	ORR1E|LTR|ERVL-MaLR	55629.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	4.17111905883332	4.06680784596165	4.6347884179466	4.18110491521954	3.83341507484669	4.59244757576746	-0.199679320594232	0.715937225488639	0.926518401339303
Merged-chr17-71836067-2	chr17	71835619	71836619	+	871.416626	f0_balb.idr|f1_balb.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	54172.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	5.20063493248969	5.59825145689574	5.00398857905438	3.74769699533895	3.54685493334711	3.81467161997534	-5.17827305722496	2.33673061743928e-13	5.02415196940278e-11
Merged-chr18-69585403-3	chr18	69584900	69585900	+	892.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	239240.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.22602436043975	6.26885023666057	5.9157485606767	5.86161239228452	5.83074567487474	6.19974794881165	-0.330791337571263	0.288354452513185	0.68578208663206
Merged-chr3-35929966-3	chr3	35929444	35930444	+	817.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	130.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	3.30686185435795	3.47680841071326	3.55388441674298	3.53850554578396	3.54878376702769	3.62385429022646	0.451400624181222	0.432763814890513	0.797479990906892
Merged-chr6-54954828-3	chr6	54954337	54955337	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16824.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.44358546934195	5.36287481347411	5.36533963062331	6.94128920472976	7.22507895604966	7.14159487129886	2.88619205428733	1.85121588262373e-22	1.9748201430943e-19
Merged-chr4-126004202-4	chr4	126003689	126004689	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20470.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	2.38428980916864	2.35044134662125	2.34572613394942	2.53991364913288	2.31061957684276	3.02470687758393	1.70705383343392	0.0543901160574195	0.299496577123007
Merged-chr7-83566236-4	chr7	83565722	83566722	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18709.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.79738542765334	3.64748210274144	3.76387014114712	4.27366678096603	4.43234874280064	4.19129081615001	1.72666382001818	0.000650336025833011	0.0129333556495012
Merged-chr4-40757251-2	chr4	40756761	40757761	+	663.5	f0_balb.idr|f0_c57.idr	intron (NM_021535, intron 1 of 11)	intron (NM_021535, intron 1 of 11)	624.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	7.38471353969233	7.7466703558314	7.36379053284376	7.41989950841228	7.52327485082635	7.49521787530623	-0.053681452696092	0.82576271034763	0.958914556097435
Merged-chr10-80475475-4	chr10	80474992	80475992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-19414.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	3.31228767094223	3.17377370186074	3.10449277814172	3.16990717707809	3.20362987537296	3.40445341607095	0.226262620633763	0.721893401711239	0.928606209603791
Merged-chr6-83795081-4	chr6	83794571	83795571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019542)	promoter-TSS (NM_019542)	14.0	NM_019542	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	8.22538096333651	8.26517683620728	8.32899341999316	8.10078646911633	8.28094962846263	7.91783949866264	-0.220176873574089	0.317896705587188	0.711697556777644
Merged-chr16-21694215-4	chr16	21693717	21694717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001001881, exon 1 of 2)	exon (NM_001001881, exon 1 of 2)	448.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	8.53602125163823	8.77345535001561	8.44991960793771	8.55320850453075	8.60390130423677	8.44284351684342	-0.0836219951863274	0.695973161538616	0.919291538728398
Merged-chr14-21499556-5	chr14	21499172	21500172	+	891.330017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205241)	promoter-TSS (NM_001205241)	-98.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	4.38485352908747	3.69106799504505	4.34824371622797	4.17583306805618	3.85294294243168	3.79728984422716	-0.640378254872573	0.264408365337219	0.662278484737486
Merged-chr17-10431101-2	chr17	10430601	10431601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-25115.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	2.78964144426732	2.73945220601708	2.90000517473875	2.60761899463702	2.45002184406237	2.67156124604059	-1.34177169088342	0.0847908235367853	0.385618432709271
Merged-chr2-129306682-4	chr2	129306194	129307194	+	865.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	3278.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.93395948580643	6.22507390627987	6.27457132927084	6.81575718506127	7.17488855177285	6.85179873041239	0.672611202627012	0.0388396485937378	0.244380884606032
Merged-chr10-117418833-6	chr10	117418339	117419339	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28596.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.62815141830963	6.31346996244177	6.71588445561903	6.63824334794128	6.81728734549038	6.4324295911459	0.145926507048494	0.610744791669422	0.885793390828629
Merged-chr13-73433773-4	chr13	73433276	73434276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33607.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.41623833139695	5.07915757453612	4.94695128807458	5.33475358195817	5.10476861705332	4.8107684062153	-0.129081049350124	0.749244430474234	0.93722412559109
Merged-chr3-145929756-4	chr3	145929279	145930279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	5517.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	3.93992704380705	3.7963499318473	4.17447885895637	3.78669346078437	3.75575312903824	4.02368468759453	-0.369700672549701	0.483517924065822	0.826261772459923
Merged-chr8-120792871-4	chr8	120792375	120793375	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54236.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.50815143103934	4.36192131009752	4.54572222119619	4.626418064712	4.35898073197463	4.35403285259015	-0.0425794918518036	0.922898200258162	0.982621045978137
Merged-chr7-101845341-3	chr7	101844843	101845843	+	790.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303231)	promoter-TSS (NM_001303231)	-12.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	5.04479807433398	4.92580945120728	5.04684956971756	5.19039920999899	5.14049175359859	5.24316257244506	0.386468804474654	0.282363044784745	0.680334748738797
Merged-chr19-41341820-4	chr19	41341318	41342318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	43252.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.10845345833717	7.00889298495219	6.9231243502536	6.97650580467711	7.37610662492299	7.17943405252351	0.26253765861508	0.303014207455154	0.699725423193419
Merged-chr4-137373896-4	chr4	137373397	137374397	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16138.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	7.42295276844017	7.12353469596073	7.31492913684187	7.59284491029299	7.70766972170214	7.11277195349342	0.314968848286103	0.243377437143009	0.640528523209625
Merged-chr7-125473979-1	chr7	125473479	125474479	+	989.0	f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	17563.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.7880591828745	4.01618122626186	3.97626828586229	4.904508363186	4.75131458211485	4.53113774685766	2.18969618682777	5.5437374024543e-06	0.000241529711670751
Merged-chr15-91169123-3	chr15	91168597	91169597	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	Lx|LINE|L1	22910.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.06423956570838	5.96425529828024	5.58446099499655	6.47050360948073	6.56054672226882	6.12903110002552	0.855437410122707	0.00771820868110824	0.0838512479354556
Merged-chr12-55437289-4	chr12	55436799	55437799	+	888.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38474.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	2.95881513443055	2.97650508006893	3.04304738298917	3.21301703502346	3.09244279175038	3.17409707278482	0.756109797792004	0.246828376686941	0.643949687388461
Merged-chr5-149267692-4	chr5	149267216	149268216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2712.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	6.96899846075785	7.46415359692503	7.1342911573657	6.59189373021961	7.12459610739579	7.09221235513735	-0.376665980651153	0.199745316066326	0.588352275982348
Merged-chr1-58745026-6	chr1	58744540	58745540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	14488.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.55990081059335	7.59028226453375	7.19338496635656	7.00449246152437	7.21255608797732	6.81237625395786	-0.650615934352353	0.0141719294196643	0.127911693584057
Merged-chr12-71001568-2	chr12	71001068	71002068	+	877.900024	f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	MTD|LTR|ERVL-MaLR	14255.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	5.10818531505265	5.22511413029297	5.34055095045685	5.31887081577907	5.67701678454532	5.67723458650036	0.686486594181451	0.0503893143234697	0.285671054454403
Merged-chr16-92847959-4	chr16	92847465	92848465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21891.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.0779890500653	4.07045044131891	3.95740052925993	4.22306934714454	4.26232297657881	4.66861288681897	0.957478046195137	0.0501608840137461	0.285159854855906
Merged-chr9-13536073-2	chr9	13535573	13536573	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83916.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.1159903712142	5.3748069379234	5.00901905167852	4.7914060887296	4.6935328316868	4.85133328823754	-0.89340142921141	0.0207718871010055	0.165538471592804
Merged-chr3-9342256-3	chr3	9341752	9342752	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-60826.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.65525277821224	4.37024498247811	4.51210040447246	3.54786253300303	3.6729043497621	3.90048976347134	-2.47975618915978	4.45605899348013e-06	0.000200421490124051
Merged-chr10-127570549-3	chr10	127570065	127571065	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36006.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.76979839565614	2.87841487887904	3.19240730753265	2.97752155027682	2.91185643502609	3.51606423720786	0.888482841361986	0.232920896318338	0.629270364053701
Merged-chr4-116789139-4	chr4	116788643	116789643	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	18416.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	4.66339019737791	4.58374003732022	4.71127873526537	4.51708132894572	4.51279948095816	4.25947284413055	-0.506746037498068	0.239623119379881	0.6365755227646
Merged-chr13-54694133-4	chr13	54693640	54694640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027395)	promoter-TSS (NR_027395)	-180.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	7.93468979010609	7.94455061912267	7.96359007701309	8.1302261605689	8.13487941631921	7.93496947277145	0.180708961070495	0.393286546507305	0.771515439837752
Merged-chr3-96257346-2	chr3	96256846	96257846	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5971.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	2.62585719933842	2.41771302501096	2.73757542277353	2.45151273437369	2.47105646806131	2.69123409770531	-0.336102720010695	0.674661649627364	1
Merged-chr10-96334185-2	chr10	96333685	96334685	+	959.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107978.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.1590747142081	7.18063335984532	6.93689487458309	7.02962326394042	6.96071436186012	7.06310328423361	-0.134698472535663	0.579182642089583	0.872437416842052
Merged-chr17-15761429-4	chr17	15760950	15761950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 30 of 35)	intron (NM_007690, intron 30 of 35)	56483.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	6.30642452610392	6.3402801568964	6.04806900733687	6.16322060469482	6.31581433075598	6.24075768757456	-0.00630865888989493	0.982323331282852	0.995992226862322
Merged-chr14-72709387-2	chr14	72708887	72709887	+	999.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 1 of 25)	CpG	616.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	7.04102669768101	7.01069003982013	6.82814546796442	7.34244601246229	6.68295528488155	7.09511923162496	0.148832981258456	0.604149208954221	0.883003945319161
Merged-chr7-129403943-4	chr7	129403535	129404535	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146941.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.53532331638136	4.72566742162732	4.9079707119954	4.94424584157753	4.7233033091272	4.97234749876988	0.352306491673806	0.38755373080617	0.76768118438771
Merged-chr11-61774962-4	chr11	61774471	61775471	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013881)	TTS (NM_013881)	-12883.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	5.29896661452834	5.31868537961962	5.45069784649273	5.2459255546269	5.16784861065379	5.76741547290946	0.104710734816226	0.779340963301961	0.945710994231145
Merged-chr14-20078621-4	chr14	20078115	20079115	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	4557.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	4.75012975775694	4.68589959258336	4.67522945739783	4.78443638028016	4.47059660805242	4.99424940188329	0.112750557591707	0.790596849291605	0.949537855598381
Merged-chr17-50393478-4	chr17	50392976	50393976	+	989.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99856.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	5.42597643942572	5.35986476880475	5.51391830868078	6.74778810743794	6.73932009489445	6.22213165185987	2.03129812767045	1.24565754585598e-10	1.64001064993013e-08
Merged-chr9-65196702-6	chr9	65196223	65197223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17967.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	7.54464823082165	7.57458751948563	7.07799824737574	7.48063501055024	7.44622724683373	7.08079499990522	-0.106603948222111	0.694413006171909	0.919210273513843
Merged-chr2-156356265-3	chr2	156355767	156356767	+	945.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 9 of 12)	intron (NM_027585, intron 9 of 12)	36712.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	4.07007559496965	3.82752825789421	4.32555880316951	6.37546341020017	6.70199128394959	6.12159158445258	6.08867022807355	1.77315246772855e-22	1.93909920708227e-19
Merged-chr6-116201992-2	chr6	116201492	116202492	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_131013, intron 3 of 3)	intron (NR_131013, intron 3 of 3)	6001.0	NR_131013	78739.0	Mm.417032	NR_131013	ENSMUSG00000108030	9530062K07Rik	-	RIKEN cDNA 9530062K07 gene	ncRNA	3.37647969720648	3.46447784779859	3.29657013403349	3.37562582978373	3.46565054976991	3.36861168343221	0.0842335459941729	0.887445803613978	0.973836995667151
Merged-chr8-69921611-2	chr8	69921111	69922111	+	949.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-19053.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	5.52671466765502	5.39805177704393	5.36785453628927	5.30173508520104	5.33317016781729	5.73064589472765	0.0419235373586321	0.904749746740444	0.978163753060287
Merged-chr15-100660551-2	chr15	100660051	100661051	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270537, intron 2 of 10)	intron (NM_001270537, intron 2 of 10)	8949.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	3.87911625014764	3.98634385268111	4.208921198331	4.21007125256146	4.33840271075402	4.23192069965552	0.686724483810354	0.153255457558291	0.522110330345248
Merged-chr2-173275720-5	chr2	173275151	173276151	+	873.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	882.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	2.36244474623285	2.43763649687564	2.49475007161477	2.21583060330509	2.02130264793768	2.17706281072143	-2.30191613419918	0.0179307232863247	1
Merged-chr13-100517921-4	chr13	100517441	100518441	+	894.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360539, intron 2 of 6)	intron (NM_001360539, intron 2 of 6)	-25332.0	NM_022011	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	3.60132948509487	3.57009552413554	3.41981701755573	3.95634792945562	4.24865469466355	4.04061024931601	1.80005807417016	0.00128635114856897	0.0219153780446615
Merged-chr9-66834137-2	chr9	66833637	66834637	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	569.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	7.27127398817844	7.7628478583235	7.18578224131245	7.14327279559953	7.51004309304205	7.19331847232224	-0.209506959062153	0.457807344829203	0.812540681905075
Merged-chr16-20804705-4	chr16	20804189	20805189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70178.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	2.90648410944322	2.7203803372153	3.20473663783183	3.41698259581149	3.00831589459088	3.10411681974658	1.04213406598875	0.155317265597175	0.524920439217742
Merged-chr1-186677821-4	chr1	186677321	186678321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009367, intron 1 of 6)	B4A|SINE|B4	28168.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	2.76834816253968	2.533716116555	2.57237124407502	2.68075370589102	2.55144220936999	2.89248476143804	0.43087971686788	0.580254404271342	1
Merged-chr2-129380385-4	chr2	129379896	129380896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-9257.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	7.6060863310674	7.58776643528761	7.46494673731377	7.44527149493332	7.79362952430947	7.51161575178837	0.0613393178122257	0.79604316543306	0.951396269938008
Merged-chr6-38810504-3	chr6	38809994	38810994	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	B1F|SINE|Alu	26817.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.79169249490846	4.16472780441883	4.1952827978556	3.41252876883989	3.28817197562557	3.70571808667129	-2.05684524104343	0.000659964877965536	0.0130748470394658
Merged-chr2-155764894-4	chr2	155764481	155765481	+	938.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10361.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	5.13450362577434	4.91557139429633	5.45777784100931	5.60673878074663	5.301371557047	5.28219449124297	0.462410646684616	0.223096515840759	0.617935983824703
Merged-chr10-44596195-4	chr10	44595704	44596704	+	830.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137456.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.15011438181227	4.00573107488545	3.85853459504414	4.06608970522256	3.97011326840982	4.348726615627	0.323617512681883	0.523512574538338	0.848259993842575
Merged-chr12-83885227-4	chr12	83884731	83885731	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	-8419.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	3.36852066285075	3.34336684719162	3.65383013033101	3.41918761306234	3.85221502001296	3.39806726876561	0.45579738044862	0.463108555950367	0.815662635550835
Merged-chr8-26888257-4	chr8	26887748	26888748	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-63825.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.63002955076683	4.64150165855018	4.54173836893677	4.43462831180135	4.11849658729399	4.34931830809672	-0.788445359046634	0.0752743693240604	0.361275291152819
Merged-chr17-24469181-1	chr17	24468681	24469681	+	572.0	f1_balb.idr	Intergenic	B2_Mm1a|SINE|B2	-1292.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	4.19395702889546	4.12950618211297	3.9177966750947	3.81686969285328	4.23652243648447	4.13617071808772	-0.0334919785649558	0.947936765043481	0.988023879468609
Merged-chr12-51865205-4	chr12	51864701	51865701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35665.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	8.27316424898893	8.7791889786179	7.69556219233349	7.5900742844649	7.39257248365378	7.27106614416051	-1.29203235777194	3.68115398377602e-05	0.00122129769011976
Merged-chr2-52949462-4	chr2	52948941	52949941	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	91573.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.8169037099582	5.69359871773208	5.88952741639032	5.58272014481531	5.67042996359559	5.5331744735281	-0.356619694225852	0.256815058529141	0.653908575783795
Merged-chr7-100498224-2	chr7	100497724	100498724	+	866.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_011671, exon 5 of 8)	exon (NM_011671, exon 5 of 8)	4866.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.17915148166323	4.94138530314213	5.28289525805599	4.6628401821608	4.6275955417876	5.37324382947191	-0.457176708501083	0.301608665042227	0.698340256583289
Merged-chr10-89680758-3	chr10	89680245	89681245	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198021, intron 1 of 17)	intron (NM_198021, intron 1 of 17)	5549.0	NM_001358843	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	2.72305533112169	3.01413786413857	2.96603512937927	2.92118278829263	2.79439763507983	3.03818867967021	0.0484045633261431	0.945944485963064	0.98796006280508
Merged-chr1-136657697-1	chr1	136657197	136658197	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-25699.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	4.99774141203294	4.83456925591891	4.87315796213398	4.51870510950633	4.65259304589207	4.93787117071223	-0.455907509338808	0.262627289716855	0.660641257716914
Merged-chr7-100122674-2	chr7	100122174	100123174	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1174.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	3.10686472149015	3.07782546534644	3.06333956687762	3.09757106471345	2.93917518078168	2.8889253112006	-0.477185198222911	0.478497565976324	0.823834402333981
Merged-chr18-84089269-8	chr18	84088696	84089696	+	876.2604369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	1038.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	5.34575638065369	4.95055126881132	5.52270406473271	5.51006962790944	5.4496630089315	5.35363713703059	0.31114349785155	0.399127689669268	0.775688105708038
Merged-chr2-150861897-2	chr2	150861397	150862397	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-19327.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.92901619744442	7.0696587287972	6.95311130831522	6.51230340279532	6.81344055916473	6.78042204016726	-0.428176210924496	0.0963511756666321	0.413790380638406
Merged-chr11-109011901-4	chr11	109011434	109012434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	91585.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	4.78160871702957	4.77131073925504	5.02139766268701	4.54620560225707	4.64703844370233	5.81966594596129	0.622439683237259	0.447556547374175	0.806548958484392
Merged-chr2-125282511-4	chr2	125281994	125282994	+	842.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34979.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	3.47743897603393	3.66715485234763	3.45653812105697	3.19762924213108	3.19320230423132	3.30153564090303	-1.24544215479485	0.0421916427088172	0.257249373966092
Merged-chr4-152027725-4	chr4	152027211	152028211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133879)	promoter-TSS (NM_133879)	-40.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	6.691948401314	6.68409856869527	6.7409419072226	6.73422624924622	6.79379403958598	6.98414050520634	0.206058119215868	0.414995216615394	0.786115461363139
Merged-chr10-71365212-3	chr10	71364711	71365711	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 2 of 5)	intron (NM_027184, intron 2 of 5)	17448.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	5.92413440262006	5.91470082569139	5.68696131070689	4.96819395964773	4.71300106874927	4.7338031329329	-2.10300677783002	7.35048991426491e-09	6.8876077115558e-07
Merged-chr7-45339462-4	chr7	45338995	45339995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010473)	TTS (NM_010473)	4226.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	6.34890796778163	5.91525297390325	5.79154905133179	6.09972264095911	5.57541222928019	5.63022466966592	-0.450275659419895	0.20643472602224	0.597067005556624
Merged-chr7-110689513-4	chr7	110689018	110690018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61861.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	5.22051484327865	4.86446794911745	5.47186793947669	5.14077287095026	5.35454403582594	5.20885031809355	0.0904825895054847	0.815405024538701	0.956370078970016
Merged-chr4-154932985-4	chr4	154932489	154933489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4912.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.98101859732728	5.40668211656532	5.45990769634379	6.0628939186027	5.9809330211341	5.95871177357351	0.620851729293513	0.0715445132668355	0.350858143464767
Merged-chr10-99926772-4	chr10	99926280	99927280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89041.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	5.08669355080461	4.84810993414707	4.68302920917499	4.83005944928804	5.06398035053144	5.15484828042463	0.277498596785108	0.487681008087799	0.828589484699393
Merged-chr2-37431279-4	chr2	37430779	37431779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	-360.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	6.82898347444677	7.08236354789715	7.28286727110984	7.11037423669323	7.07295805857142	6.85526522451607	-0.0728998998531398	0.78250064034842	0.94657720843369
Merged-chr13-37660270-4	chr13	37659763	37660763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165775.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.31051347398869	5.02170161552708	5.08823878257334	5.46893543099628	4.98781448086438	5.15328604718318	0.139162864680388	0.717236812000364	0.926979087819795
Merged-chr4-43469621-4	chr4	43469109	43470109	+	840.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	14100.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	6.28880483148224	6.34939596783214	6.41678255187735	6.13202871220344	6.36090785638742	6.22467495454983	-0.167281045653504	0.546465300056195	0.858776736684105
Merged-chr9-95750319-4	chr9	95749785	95750785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311123)	promoter-TSS (NM_001311123)	73.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	5.83648397936601	5.50639708892719	5.36362936740899	5.6171590780788	4.9256312240447	5.36448638408637	-0.500726857564385	0.205571435871769	0.596131993192832
Merged-chr2-90673493-4	chr2	90672995	90673995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3720.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	6.27456249144368	6.07080874630319	5.94459542100568	6.32369618664477	5.92029458996279	6.14375614095709	0.0411105000654102	0.893825571566514	0.975280227461205
Merged-chr4-116994465-4	chr4	116993963	116994963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	-50.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	4.93283471093129	5.19164575123335	5.14499974304213	5.36472502747695	5.49033325608211	5.14083385452589	0.528411780529568	0.148416156297427	0.513953991981574
Merged-chr19-6295432-2	chr19	6294932	6295932	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-11025.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	4.42212892302705	4.20895962803828	4.70390644182447	4.21616171269433	4.14947736467294	4.76804367125847	-0.14067759169465	0.779143371284483	0.945710994231145
Merged-chr10-44632927-4	chr10	44632389	44633389	+	970.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174141.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.12553837762277	7.11614096841167	6.94291707819836	7.0652255787545	7.00582598411733	6.72404582823824	-0.183884944541415	0.46886795028272	0.818752663318459
Merged-chr1-64299759-2	chr1	64299259	64300259	+	636.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178370.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.65873883068255	5.45390765243977	5.91518074197413	5.8774331530744	5.71142683740678	6.16394563419453	0.435006400283132	0.199685900192031	0.588248843885427
Merged-chr7-119920640-4	chr7	119920164	119921164	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20553.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	5.20784150429311	5.16580628976147	4.82495754282075	5.45843550801024	5.51348809285019	4.93527511617135	0.509912710190684	0.203095516045348	0.593044889392741
Merged-chr8-82983343-1	chr8	82982843	82983843	+	609.0	f0_balb.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	119987.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.99529125080625	3.23653460682917	3.07341213063184	2.88326631587459	2.7396509451653	3.31103173449646	-0.494214880339275	0.502465171963735	0.836517047394126
Merged-chr2-128967256-4	chr2	128966750	128967750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-152.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	8.72237516706982	8.97820216208339	8.4102061838302	8.54970610984924	8.70107419302826	8.45966830990956	-0.212156025876279	0.37422111063881	0.757933699438553
Merged-chr17-36043963-2	chr17	36043463	36044463	+	812.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034909, intron 1 of 2)	intron (NM_001034909, intron 1 of 2)	1002.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	5.56767452248767	5.56581129406205	5.44042371673951	5.66375700100208	6.11263678619347	5.50464603569103	0.50322053506172	0.151580289734101	0.519079091424247
Merged-chr18-69588620-4	chr18	69588121	69589121	+	775.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	242461.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	2.80334003736453	2.82638159332008	3.08315955317681	3.04921591870003	2.87849648694945	2.86063628939911	0.139598947679484	0.843160065477025	0.96330726515818
Merged-chr10-77967884-2	chr10	77967384	77968384	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	1988.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	6.00000691165838	6.07908740036024	5.92730380545428	6.73079140766494	6.74608705935395	6.68373064744653	1.1669571036355	1.54894065850954e-05	0.000584509089856064
Merged-chr7-75371134-3	chr7	75370627	75371627	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61865.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	2.6213853853928	2.66733367881535	2.70882264107027	2.58057320792619	2.30839608460891	2.72147799098209	-0.702120152728637	0.393859131639993	1
Merged-chr4-63401171-4	chr4	63400677	63401677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	2268.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	7.78708603459468	7.99304146934033	7.73035308893412	7.7321665626696	7.81999081949305	7.59108525930479	-0.17657107512559	0.438170736099943	0.800419903410376
Merged-chr9-90126875-4	chr9	90126377	90127377	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12057.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.35737179250985	4.7734737958324	4.6102126566869	4.57457876301209	4.87592109329801	4.9376089855889	0.490303517836383	0.258367745691835	0.655874775261646
Merged-chr2-26360984-4	chr2	26360506	26361506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1459.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	5.0329829639932	4.88233128361537	5.38053484330601	5.09834815496469	4.97598891800343	4.89357960555443	-0.229291197218025	0.558619429298155	0.864744077984264
Merged-chr17-57344599-4	chr17	57344117	57345117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14069.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.62506158950259	6.23357092066006	6.43029818031938	6.55919717120901	6.82579674026305	6.59679318671987	0.371298812133242	0.188726954455875	0.574222837446979
Merged-chr11-89007711-1	chr11	89007211	89008211	+	606.0	f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	8308.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.98775632787097	3.81948152602191	4.29628599468602	3.93129632009848	3.68797808434556	3.76439532462601	-0.750752819726126	0.163647830259035	0.537684265582691
Merged-chr3-89391975-4	chr3	89391493	89392493	+	984.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	76.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	6.5468565785588	6.61506422499011	6.84094497135492	6.76939634093593	6.85131306234893	6.95435007272006	0.301068220957915	0.244647043219591	0.64198815440115
Merged-chr3-119782517-2	chr3	119782017	119783017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310711, intron 1 of 13)	intron (NM_001310711, intron 1 of 13)	871.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	7.44565694864633	7.17321388737287	7.13922026180555	7.45311850111901	7.11006987713787	6.95309783845867	-0.105068944806327	0.695821513357663	0.919291538728398
Merged-chr3-15007131-1	chr3	15006631	15007631	+	541.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	35930.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	2.879225684454	2.9300335749196	2.96255435814276	2.72030505281812	2.60672778217966	2.52804609585033	-1.65033222835987	0.0343104133932561	0.226777415015177
Merged-chr18-63708658-4	chr18	63708164	63709164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360837)	promoter-TSS (NM_001360837)	-31.0	NM_001360837	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	7.18618585331442	7.19220349194322	6.89726207382578	7.19244879744312	7.18791831779678	6.73295080199244	-0.0606585215949166	0.822842486655904	0.958157740034768
Merged-chr1-189875839-3	chr1	189875338	189876338	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	46453.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.59994118839031	3.12481813649401	3.28021542944892	2.87196280712275	2.86875966854454	2.78984042826408	-2.41450447928017	0.00161731937228679	0.0262583239666808
Merged-chr13-51417952-4	chr13	51417453	51418453	+	960.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010101, intron 1 of 1)	intron (NM_010101, intron 1 of 1)	9335.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.67437782203906	3.38316536929137	3.56429800782547	3.38971574784604	3.53830353898304	3.58159525753717	-0.147457406823914	0.800215656306936	0.952428832140568
Merged-chr8-3515935-2	chr8	3515435	3516435	+	929.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	551.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	5.1143628290621	5.18766501526832	5.48985068797747	5.23040102319928	5.35919436565942	5.68014140340366	0.325306284316109	0.376087726207477	0.758980076211389
Merged-chr4-144908276-1	chr4	144907776	144908776	+	763.0	f0_balb.idr	intron (NM_001357274, intron 2 of 6)	L2a|LINE|L2	15139.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.40663686904256	5.43730089068891	5.75659306891738	5.3775357551876	5.16841708798904	5.4238341550185	-0.414496637662481	0.236414471871008	0.632720263621021
Merged-chr16-58670351-4	chr16	58669831	58670831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007757, exon 1 of 7)	5' UTR (NM_007757, exon 1 of 7)	123.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	5.41610117870788	5.58476734628838	5.48523277027328	5.10959530401052	5.16227127766513	4.95142818751216	-0.823857795400284	0.0193983381327795	0.158213773706363
Merged-chr8-14837779-4	chr8	14837262	14838262	+	952.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 13 of 15)	intron (NM_172910, intron 13 of 15)	-50774.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.98260333211928	4.27530373582288	4.20160097132243	4.20308087217092	4.1008201728655	4.03177413208837	-0.121047831530527	0.802304872505533	0.953197339007501
Merged-chr13-51645127-4	chr13	51644603	51645603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025415)	promoter-TSS (NM_025415)	-129.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	7.3805206454117	7.5364467732237	7.58964821730603	7.62942028418259	7.76723140860424	7.8119312914554	0.341808299868572	0.129176710236986	0.480703743533055
Merged-chr9-62812553-2	chr9	62812053	62813053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-905.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	8.32256852556801	8.34003526598118	7.88879669929752	7.94431038468194	8.12860209387765	7.76337259148883	-0.348079948841667	0.159599110116675	0.531877190382303
Merged-chr17-72835764-2	chr17	72835264	72836264	+	997.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-864.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	7.84835445060716	8.50887391847091	7.95288171925416	8.03618954594967	8.52229348563429	7.99337908624817	0.0980983430691948	0.734190190181991	0.932325051544019
Merged-chr3-52046226-4	chr3	52045726	52046726	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	58780.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.7433858976072	7.11646369791984	6.52890126902168	6.91108402973044	7.2817224235906	6.71362533061131	0.263280998855912	0.390906439812485	0.770052731867201
Merged-chr11-87853800-2	chr11	87853300	87854300	+	862.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001039684, exon 2 of 18)	exon (NM_001039684, exon 2 of 18)	575.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	4.79029209071826	4.97611929842237	5.24402192896884	5.16481360953689	5.03838450065463	5.08360525767635	0.192074051184445	0.615632439077037	0.888073730124794
Merged-chr5-134555672-4	chr5	134555167	134556167	+	909.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3233.0	NM_009990	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	3.81191732905445	3.81055150119884	3.94154287737143	3.93822055973131	3.65906453277949	3.81276927733401	-0.152535111143438	0.771724307275047	0.943614978016208
Merged-chr6-35537968-2	chr6	35537468	35538468	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	1920.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.94479942745786	4.31459354822054	4.3698784364921	4.36819946487929	4.08048496383728	4.43638171585675	0.209122239070017	0.671296883226963	0.91042706437241
Merged-chr19-5715997-2	chr19	5715497	5716497	+	636.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053252, exon 12 of 19)	exon (NM_053252, exon 12 of 19)	10320.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	3.07602023522925	3.16934429174823	3.48021133812064	3.06225673320802	2.81457877929262	3.29291092123497	-0.786388031110307	0.266430828448467	0.664166899200562
Merged-chr1-172423589-4	chr1	172423074	172424074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	47043.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	3.91305663638051	3.76628704121331	4.10010091587778	3.97876103943727	3.90001413883932	4.25338143370785	0.354033287149252	0.493011821905284	0.831208279358962
Merged-chr4-154929571-4	chr4	154929053	154930053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1476.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	8.06386955383143	7.89492950414125	7.73578257572345	7.94444317913779	8.23371985448851	7.86135198276802	0.170720292505579	0.474108215520565	0.8212677505368
Merged-chr9-77924002-4	chr9	77923503	77924503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	6638.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.62931154071913	4.37930359307472	4.48283510535259	4.41740930642507	4.30647184454507	4.33096272087929	-0.385848720822235	0.380242073169299	0.7624083092188
Merged-chr5-112993431-1	chr5	112992931	112993931	+	600.5	f0_c57.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	22107.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	3.69302847918884	4.01565451001067	3.77119450240168	3.86847068381172	3.45248686469983	3.56869366977154	-0.649615016167901	0.259161394081161	0.656825376873982
Merged-chr9-64738121-3	chr9	64737613	64738613	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	-357.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	6.89752516796921	7.08011234887604	6.69517256953266	6.95950694671581	7.03140331153096	6.7376031832599	0.0211500882927061	0.936447398306016	0.986037792257163
Merged-chr17-43077182-4	chr17	43076658	43077658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	60603.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.65805775390068	7.50191470472024	7.28703871780769	6.6866871889135	6.59210334509536	6.55458772321753	-1.34229973477093	1.01883400862156e-07	7.25193671423292e-06
Merged-chr1-43913423-4	chr1	43912922	43913922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20572.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	7.51652456074368	7.76143148607179	7.75890917847749	7.70565388617046	8.02886655725383	7.78142490447778	0.244942576877974	0.299480386761467	0.696241066794673
Merged-chr17-87326267-2	chr17	87325767	87326767	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	43381.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	2.84195444844425	2.82209819908188	2.87409010235241	2.74255616087208	2.62677385540269	2.88709940866753	-0.496309322105322	0.4937341933133	0.831564949340399
Merged-chr16-33531347-4	chr16	33530850	33531850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12755.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	7.3065731191391	7.34527124608262	6.64789073226416	6.23836787807411	6.33448192054735	5.80663691744161	-1.55703838032761	3.00299306861057e-06	0.000141987831448589
Merged-chr2-24345269-4	chr2	24344773	24345773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-18.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	6.3155459319494	6.52826130817994	6.26542132849362	6.45066511093057	6.57321815962107	6.46186337267104	0.191912142381908	0.481864378569959	0.825208669475694
Merged-chr13-81107641-4	chr13	81107147	81108147	+	896.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	143573.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.59590492663675	4.73786472043415	4.10079622317102	4.33380861533136	4.03146255942438	4.22318965586606	-0.831138235405992	0.0943630104928166	0.409414817868719
Merged-chr10-70095979-2	chr10	70095479	70096479	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1142.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	6.29641415854861	6.73293410198171	6.93595266113841	7.25544774498618	7.27825549195962	6.48968709745628	0.595740860559048	0.0768485974675161	0.365270084432599
Merged-chr9-21616065-4	chr9	21615563	21616563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011417)	promoter-TSS (NM_011417)	-106.0	NM_011417	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	7.44368540317442	7.78934812586744	7.49514974628381	7.61332788420191	7.63863848281707	7.42578355079369	-0.032557125702063	0.892439378966671	0.97511964368335
Merged-chr5-21517733-4	chr5	21517233	21518233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 17 of 20)	ORR1C1|LTR|ERVL-MaLR	-25794.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	5.18942813179092	4.96065944945751	5.08902554678667	5.28196233433848	5.60772196754026	5.28865129929309	0.665672835362204	0.0670633250815948	0.338522515978485
Merged-chr4-62470914-4	chr4	62470418	62471418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290521)	promoter-TSS (NM_001290521)	-19.0	NM_001290521	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	2.57047998512026	2.46415108825881	2.82397501374605	2.4797433149269	2.42035420320192	2.47044457609973	-0.990935675764263	0.220987535560103	1
Merged-chr7-25219203-4	chr7	25218714	25219714	+	952.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207677, intron 1 of 4)	CpG	645.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	6.92107023974838	7.20104712610071	6.38970083319937	7.02704293919095	7.24055047133054	6.53190355495058	0.130055123786234	0.700681445027776	0.920989221500556
Merged-chr15-39770448-2	chr15	39769948	39770948	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022722, intron 9 of 9)	LTR16C|LTR|ERVL	24518.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	4.6234380644376	4.20727579952372	4.29138379562952	4.5965760697069	4.14583983370583	4.11567572206538	-0.215553218003016	0.664638139029752	0.907711162268778
Merged-chr15-84184512-2	chr15	84184012	84185012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-7721.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	6.23069216783241	5.97615894693644	6.45565338882454	6.79764241137989	6.81341922898957	6.83325793353315	0.952530437714631	0.000649481995848796	0.0129225485199872
Merged-chr3-105800786-3	chr3	105800273	105801273	+	972.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	CpG	608.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	7.60313979232913	7.55578023972632	7.53744395879593	8.01821404659962	7.68407963664982	7.76939769928001	0.382183051056349	0.0958199502890768	0.412680456710844
Merged-chr12-4198905-4	chr12	4198387	4199387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 8 of 21)	intron (NM_001159537, intron 8 of 21)	35078.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	6.92066469801871	7.24267679181047	6.85517201995429	6.27085982773591	6.39496155397083	6.45228173412753	-1.02699398804582	0.00015802665709545	0.00414183194240544
Merged-chr14-27315500-3	chr14	27314970	27315970	+	899.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 2 of 10)	G-rich|Low_complexity|Low_complexity	-20567.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.8441488848188	2.58595213133254	2.78198654284559	2.74368916850934	2.51217948790544	2.66865529792486	-0.538722421244803	0.482925086550198	1
Merged-chr2-30364669-2	chr2	30364169	30365169	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175392, intron 1 of 15)	intron (NM_175392, intron 1 of 15)	334.0	NM_175392	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	3.27734013914849	3.44542739683879	3.44296560423947	3.21890987914893	2.92442525848002	3.46088857701305	-0.716885669636313	0.286037011051382	0.68342985932029
Merged-chr5-147060173-3	chr5	147059660	147060660	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	16412.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.02781232018785	7.13280220049628	6.69619210538771	5.09740996084948	4.59596001176062	5.19848568477791	-3.72609052128849	7.76396498625034e-25	1.29204799715184e-21
Merged-chr13-37692552-3	chr13	37692049	37693049	+	940.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133489.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.13528435928717	2.78807095540888	3.09077843176854	3.14734007758215	2.93517812111127	2.85670911735565	-0.116967049081709	0.870105099280475	0.969998326624549
Merged-chr14-60988715-2	chr14	60988215	60989215	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49272.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.95785616261733	4.22257581027556	4.13620725875962	5.12216480085706	5.10464146106104	4.87219565190004	2.31518663604288	2.70566974167745e-07	1.7068488844996e-05
Merged-chr11-87426887-4	chr11	87426399	87427399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-692.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.50097719382582	6.88032124561984	6.79710813827468	7.24051573159388	7.21756745183914	6.6135244494408	-0.0674755485216239	0.83728104303338	0.962133986386607
Merged-chr11-96319073-2	chr11	96318573	96319573	+	779.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010459, exon 1 of 2)	exon (NM_010459, exon 1 of 2)	806.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	5.91618039427302	5.89554317740251	6.00059492025703	6.16564365023026	5.84906522201314	5.76617441252704	0.0131856789949739	0.965963925316148	0.992191481673282
Merged-chr14-16367168-2	chr14	16366679	16367679	+	589.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_009409, intron 1 of 35)	B3|SINE|B2	1973.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	3.32764179175417	3.1886106301968	3.34720986291302	3.21304885519458	2.90780838071972	3.07343740813263	-0.957630563471566	0.149107751567535	0.515324713093181
Merged-chr1-7395713-4	chr1	7395199	7396199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	306779.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.35963957402727	3.4479706228765	3.39118810218317	3.3183548076781	3.59253932043438	3.09847496302315	-0.142342519697501	0.82692027886769	0.959278302444461
Merged-chr13-76128929-3	chr13	76128405	76129405	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081352, intron 17 of 43)	intron (NM_001081352, intron 17 of 43)	30171.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	3.09837446033108	3.28095590896209	3.26167783295838	3.09694427609072	2.84464596266905	3.22183842508934	-0.698716743424645	0.303499001213128	0.700048369821532
Merged-chr4-155993133-4	chr4	155992619	155993619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302469)	promoter-TSS (NM_001302469)	-34.0	NM_001302469	20318.0	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	7.55649302494563	7.7344090094016	7.82825749622653	7.75996564805896	7.89668041499336	7.70671058393853	0.125420335981283	0.579141770201431	0.872437416842052
Merged-chr13-34078050-4	chr13	34077558	34078558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-50.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	7.72224412307666	7.59117265726825	7.43723523357973	7.42563770508827	7.60373114724652	7.50462969489824	-0.114124381299196	0.621717720537749	0.8908398051148
Merged-chr12-99993232-2	chr12	99992732	99993732	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	28733.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.25636917453923	6.10115207050259	5.87885433653541	5.90758529775639	5.81612407656009	5.86500343596686	-0.411235348945749	0.174190741866434	0.55334916165878
Merged-chr8-119432432-4	chr8	119431944	119432944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4718.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.41398340704115	6.15778325601826	6.10031563684361	6.06113779745199	6.15729675980656	5.44248609795604	-0.501668593440762	0.149721390731659	0.516223009447192
Merged-chr11-5094658-2	chr11	5094158	5095158	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007968, intron 1 of 16)	B2_Mm2|SINE|B2	4430.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	2.90244696224958	2.65122761566267	2.62842637803697	2.68738655414982	2.68473929425822	2.82836037372118	-0.0260871460738855	0.97231049214595	1
Merged-chr7-116491260-4	chr7	116490766	116491766	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13103.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.97071036726269	4.82034433669791	5.22505612140932	5.12624240834355	4.96244196393604	4.9927473114495	0.0515608953931263	0.893125128576207	0.975200520944414
Merged-chr4-128979535-2	chr4	128979035	128980035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-13689.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	5.98873567253584	6.18780043869341	6.42502955996691	6.04523150317037	5.93342424274327	6.56585195346813	-0.00989607199881081	0.976323129172269	0.994694354430036
Merged-chr9-123113064-6	chr9	123112558	123113558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081188)	promoter-TSS (NM_001081188)	147.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	7.62332184839742	7.9419870750072	7.91062881955309	7.89050441671746	7.86094292854458	7.79811820945176	0.0287475234184723	0.898982606834735	0.976432549466174
Merged-chr2-25029457-2	chr2	25028957	25029957	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-24922.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	2.37123279147696	2.38275406431121	2.61769124809804	2.72918122394561	2.60662945193426	2.69168691266027	1.31650143595244	0.100824705451656	1
Merged-chr19-46504332-4	chr19	46503838	46504838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2690.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.54004084354678	7.36514037850415	7.66180209402576	7.6151121132352	7.51245678343738	7.53201602128875	0.0454025073664587	0.84348977933585	0.96348544936478
Merged-chr7-115131470-4	chr7	115130958	115131958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180184.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.2666696179042	2.90105534135835	3.05804564474819	2.96373944192651	2.69237252614376	3.24337110926396	-0.458721281092876	0.539807003602797	0.856118577256867
Merged-chr1-37999339-4	chr1	37998829	37999829	+	772.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	1319.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	5.68619994991034	5.83189572160736	6.16647881865617	6.16496996762478	6.37894072932153	6.43251402894972	0.736542897793047	0.0169782189492799	0.144761106909692
Merged-chr8-111094587-4	chr8	111094091	111095091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198308)	promoter-TSS (NM_198308)	-154.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	7.22421810228786	7.19374117719478	7.05420188854909	7.3634502936401	6.86539061191403	6.79058793476727	-0.189466203672741	0.494063226079691	0.831815174927983
Merged-chr7-122087291-3	chr7	122086795	122087795	+	981.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14553.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	5.74419518001199	5.93406557783899	5.70938722014076	5.69072181420419	5.91893713196768	5.66202971746065	-0.0592964214466109	0.851559297325709	0.965308584279629
Merged-chr12-71007058-4	chr12	71006542	71007542	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	Lx8|LINE|L1	8781.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	5.65894738438853	5.55060815384425	5.57062109946525	5.48367929375206	5.64010340178629	5.73886262705869	0.048735911363126	0.879323818801153	0.972083703102674
Merged-chr5-16553927-1	chr5	16553427	16554427	+	902.8333130000001	f0_balb.idr	promoter-TSS (NM_001289461)	promoter-TSS (NM_001289461)	26.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.51321067015806	6.53072791794442	6.38408642528406	6.66187095036035	6.729103294801	6.32384332019444	0.181854101978414	0.511846688051115	0.841594846107395
Merged-chr2-27027522-4	chr2	27026998	27027998	+	923.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 1 of 8)	intron (NM_001177627, intron 1 of 8)	500.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	5.68628821570709	5.10125080494763	5.4267563214248	5.88385963049372	5.85989660797107	5.74487247883872	0.748865285810969	0.0334017670306895	0.223057321917304
Merged-chr5-110385476-4	chr5	110384977	110385977	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	1650.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.39318464078203	3.95644656781784	4.52176927827071	4.9320330105788	4.66978537655343	4.82056884125327	1.24357740220218	0.0077067452834895	0.0837675815952869
Merged-chr4-8536965-2	chr4	8536477	8537477	+	588.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	1333.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	4.90970365813706	5.01886243500052	5.20095600471824	5.43381646994811	5.19055355479129	5.06196515260576	0.418638795842136	0.261639801680008	0.659457534066706
Merged-chr15-39769072-3	chr15	39768579	39769579	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022722, exon 10 of 10)	3' UTR (NM_022722, exon 10 of 10)	23149.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	3.0839415731349	3.06483888021391	3.16642205631635	3.19685464858507	3.12801065802121	3.29339539252911	0.436138511191144	0.492778726832713	0.831208279358962
Merged-chr4-141722200-4	chr4	141721696	141722696	+	984.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	1223.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	6.58607228151229	6.87486764188646	6.70580824246735	7.54059334863191	7.77490825505676	7.17246405533516	1.2019956514027	1.28360473523039e-05	0.000495836618547417
Merged-chr18-65497147-4	chr18	65496637	65497637	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66140.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.49739556723627	6.29480720167224	6.50886863079087	5.00473870470517	4.897979217488	5.46917773252138	-2.42860096762272	2.20749121673762e-12	3.99306367744140e-10
Merged-chr5-148453011-4	chr5	148452521	148453521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53117.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	5.17103624766718	5.13931528229045	5.32301166040159	5.52897922537068	5.40476964498597	5.58621434995616	0.585209944532248	0.0855206710964089	0.387265523841632
Merged-chr11-80428578-4	chr11	80428082	80429082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178616)	promoter-TSS (NM_178616)	-33.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	7.43598530846348	7.78056954422483	7.49445964574947	7.31195117726741	7.24577477288106	7.41779133510961	-0.383176731035477	0.111933252742573	0.446895163101772
Merged-chr4-48116458-2	chr4	48115958	48116958	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8461.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	2.13753945645755	2.28938664725249	2.24017641967786	2.31510830365127	2.15173127202297	2.56854053256079	0.84454781689286	0.340988617409058	1
Merged-chr18-82822042-4	chr18	82821548	82822548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33849.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.25260916141899	5.90683431746418	6.15337895719098	6.50696263038641	6.43631829979602	6.07980307342178	0.421914655978882	0.164744846598242	0.539419247854745
Merged-chr5-105112242-2	chr5	105111742	105112742	+	915.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1950.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	3.10478217536958	3.31861899131224	3.35375253041171	3.36120734378305	3.35617352495957	3.42459872598589	0.471973560795056	0.441380048867576	0.802586344103437
Merged-chr5-36557752-1	chr5	36557252	36558252	+	826.0	f0_balb.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	24645.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.24330440272214	5.16435418044645	5.51945248392401	4.47868392462216	4.45505161560826	4.69157726357035	-1.73271133027723	1.79261799343772e-05	0.000664410503331697
Merged-chr14-63437378-5	chr14	63436898	63437898	+	932.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	1004.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	8.14020237227045	8.08687818188169	7.9379609870262	8.2320882709553	8.27606431323581	8.04724333705649	0.185648371477168	0.389625426188298	0.769266146124618
Merged-chr4-107803972-4	chr4	107803498	107804498	+	905.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	1739.0	NM_001080926	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	2.93717137876903	2.6568250381936	2.82282046889801	2.69356007102139	2.60950483168785	2.71035782731237	-0.757813288548024	0.311219799588164	0.706465219571547
Merged-chr15-55563920-4	chr15	55563424	55564424	+	885.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168250, intron 4 of 16)	intron (NM_001168250, intron 4 of 16)	6516.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	3.19956727811998	3.08711917441508	3.1332512696361	3.18146487593489	3.05260473974266	3.47735475875913	0.418965517593325	0.522524394259124	0.847644119032093
Merged-chr1-6214711-4	chr1	6214225	6215225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009826)	promoter-TSS (NM_009826)	63.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	7.96604972015653	8.43397638735032	8.11131846374911	7.93921243574468	7.95028858261415	7.78957860615562	-0.412427949514949	0.083434798286638	0.382286007199333
Merged-chr9-105129985-3	chr9	105129481	105130481	+	928.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029385, exon 3 of 3)	3' UTR (NM_029385, exon 3 of 3)	1824.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	5.89592164732166	6.15233964446088	5.58279659957485	4.74521945569365	4.91579317940306	4.56139066074274	-2.28712909270005	2.05283585426235e-08	1.73237693470042e-06
Merged-chr15-75679456-4	chr15	75678937	75679937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	-637.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	6.25387215664201	6.86718116325515	6.51586271081965	6.60258708523317	6.75769824176142	6.46552879990236	0.070329483307777	0.816413063167265	0.956664796338092
Merged-chr14-17879664-4	chr14	17879185	17880185	+	959.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-101959.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.98858285698328	5.12215837757133	5.06955224790657	5.16849000488173	4.92686331243392	4.83898168563048	-0.154387379296997	0.682769778446932	0.915212496624716
Merged-chr8-84799321-4	chr8	84798830	84799830	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 1 of 9)	CpG	1008.0	NM_010906	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	4.17283153562733	3.72371759284667	3.74928908579896	4.08914183124897	3.77711944726757	3.97702023031838	0.138274788572403	0.800759637219931	0.952697697308098
Merged-chr13-101741278-2	chr13	101740778	101741778	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	26939.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.93267116764295	3.83660425694508	4.04702712592863	3.9031182710161	4.0209749276549	4.11480965747606	0.233180815931463	0.640255881080267	0.898404369829977
Merged-chr11-48853027-2	chr11	48852527	48853527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15556.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	4.47675333456911	4.26746972263824	4.10134558395715	4.03408879114974	4.04009295939943	3.79819010878479	-0.929817854535428	0.0660788481524689	0.335492140981697
Merged-chr12-73686966-4	chr12	73686465	73687465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102169.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	7.92772946674052	8.14513476435737	7.57794244603282	7.90306860386631	8.22913514850381	7.30509057623539	-0.0448476567711258	0.885404050262868	0.973605130359095
Merged-chr1-154016991-2	chr1	154016491	154017491	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117062.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.36931007342355	3.57498129556196	3.41491243400613	3.00471569669406	2.8554987515101	2.95103879847888	-2.46869398196342	0.000539474525614004	0.0111386095104938
Merged-chr17-56812227-4	chr17	56811739	56812739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009056, intron 1 of 16)	RMER5|LTR|ERV1	18769.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	4.89298584211135	4.46767570660905	3.97416082363114	4.88965227437423	4.46640066861216	4.21946413157721	0.159959615408135	0.862068846120771	0.967996224966109
Merged-chr19-5879206-2	chr19	5878706	5879706	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 1 of 5)	intron (NM_134154, intron 1 of 5)	1384.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	4.96045074234475	4.85934403871287	5.25100409245078	4.94455044841688	5.16500153540109	5.19098283936683	0.174241728092662	0.648519327975011	0.901859560058813
Merged-chr16-14164130-3	chr16	14163636	14164636	+	787.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114085, intron 1 of 8)	intron (NM_001114085, intron 1 of 8)	861.0	NM_001114085	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	3.87774711109009	3.80379434024988	3.8867325842215	3.9310596270792	3.60770584076515	3.80517661130622	-0.23092850454766	0.663487203952954	0.907241228990294
Merged-chr11-120581641-4	chr11	120581143	120582143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-23.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	8.73883404005731	8.53521147517474	8.49254401342576	8.469787062576	8.34977983829654	8.21103803335913	-0.340744344778968	0.112360913686849	0.447687566666004
Merged-chr1-152601570-1	chr1	152601070	152602070	+	619.0	f0_balb.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	23647.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.45410584815195	5.47443102890007	5.54735425219967	5.60890477495505	5.44667147129988	5.83804624142541	0.262564768961593	0.430802030501667	0.796606987332891
Merged-chr18-65693754-4	chr18	65693257	65694257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4511.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.96611043786737	8.08987354400449	7.44722273365525	7.70185350369853	7.99513710834558	7.59894822688602	-0.1280701334416	0.638931867900681	0.897847437626511
Merged-chr11-73326038-1	chr11	73325538	73326538	+	576.0	f0_balb.idr	Intergenic	Intergenic	-1401.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	8.07924673103342	8.380830715442	7.72864051137454	7.78567952421368	7.98649480746585	7.64315225086786	-0.397879222010298	0.132281809302632	0.486514532728668
Merged-chr19-47395058-3	chr19	47394585	47395585	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	B1_Mur4|SINE|Alu	69326.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	4.08176207208394	3.90151146678963	3.69486544066532	3.87903001387026	3.7093715095767	3.76668516862763	-0.394441023631623	0.461745727949499	0.815107818354545
Merged-chr4-66827614-4	chr4	66827116	66828116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021297)	promoter-TSS (NM_021297)	65.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	7.5006391731744	7.67004946870411	7.35173522001663	7.40696682802381	7.83083154640093	7.5465312273482	0.1366985347127	0.586565231456758	0.875602825595287
Merged-chr11-69063759-6	chr11	69063323	69064323	+	980.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4048.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	6.20264951908368	5.72067055884491	6.05933012756824	6.00023297595437	5.97182418840875	6.11983923762255	0.0339644544186898	0.913864666526564	0.980811835491594
Merged-chr7-126792544-4	chr7	126792055	126793055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360464)	promoter-TSS (NM_001360464)	-8.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	8.09491148012889	8.40416924700339	8.06445452303496	8.07437306571997	8.0799165277492	8.29740923710534	-0.0709305201844439	0.756295577186109	0.939545863427369
Merged-chr2-26941094-2	chr2	26940594	26941594	+	795.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_198628, exon 5 of 19)	exon (NM_198628, exon 5 of 19)	7025.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	6.49421367471275	6.44591872209283	5.86145762351202	6.16648505850935	6.22293413718824	6.0746282902073	-0.253864425001622	0.424330002768338	0.792646616162623
Merged-chr17-47526440-2	chr17	47525940	47526940	+	582.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1_Mus2|SINE|Alu	21389.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.99497805174855	4.07457678906649	3.81498355174652	4.00516097681114	3.84690251624163	3.83253971960851	-0.230183488235408	0.653214566533091	0.903270202473883
Merged-chr4-83309653-2	chr4	83309153	83310153	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	14536.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.56949422428444	6.93948907401311	6.46918323963371	6.59476027752741	6.85467787293961	6.41279008187327	-0.0629695520761875	0.832116000784973	0.960607102173713
Merged-chr8-126590236-4	chr8	126589725	126590725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3211.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.91591165479361	8.182197217723	7.60199087071717	7.94324713914586	8.15311844096113	7.54538590448783	-0.022240751115209	0.936314103485523	0.986037792257163
Merged-chr11-62550490-4	chr11	62550027	62551027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-644.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	9.59168614983017	9.86625693430665	9.11674468085206	9.32217560005317	9.76048839215166	9.06965757737806	-0.194389462774901	0.494591039536906	0.832098209532918
Merged-chr4-6446882-2	chr4	6446382	6447382	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	7389.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	3.47236933876029	3.17072977006229	3.25550411987505	3.37671343751271	3.32853418915812	3.44065409912474	0.279435468562789	0.649966830725103	0.902467704262052
Merged-chr1-152805054-4	chr1	152804549	152805549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	4896.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	6.17631461887641	6.15214578802052	6.12495258839656	6.24745961384127	6.10573604971674	6.14219819872066	0.0211917525865811	0.939565427607727	0.986720663284284
Merged-chr2-164912326-4	chr2	164911819	164912819	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199027)	promoter-TSS (NM_199027)	-569.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	7.72201221437564	7.93762532325009	7.54088482512318	7.89651549637555	8.26085496303358	7.78707324972506	0.364943704017553	0.15247454711626	0.520581697545072
Merged-chr11-121685979-3	chr11	121685477	121686477	+	824.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12826.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	2.90208312672521	2.96763534509327	2.71479930054216	2.88262496668423	2.82657998829871	3.20662636169592	0.508071095360547	0.488919265970804	0.829423271678195
Merged-chr9-63642449-4	chr9	63641961	63642961	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151671, exon 10 of 10)	non-coding (NR_151671, exon 10 of 10)	39815.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	3.96757537145096	3.84753913882747	3.98219214394056	3.9767061001861	3.73866300737737	3.8007937602814	-0.282421188473849	0.583771827691845	0.874225271981634
Merged-chr10-44818805-4	chr10	44818296	44819296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-248418.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	2.99505973096659	2.85695088569383	2.99987225320688	2.76027225013012	2.71747795750669	2.95553239015918	-0.709821712195781	0.319037314487854	0.71299998254265
Merged-chr17-78407803-4	chr17	78407301	78408301	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	10351.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.43874689209213	4.78221133760543	4.17766561258114	4.38597829528564	4.20790893093446	4.24825960788665	-0.566374049939441	0.238100344422776	0.634690163662674
Merged-chr1-95313642-4	chr1	95313150	95314150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026321)	promoter-TSS (NM_026321)	22.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	8.39338206579425	8.64677253012753	8.16488698703382	8.22957468729602	8.2992555814953	8.0408928658517	-0.313561110384931	0.183748203466574	0.567117371996399
Merged-chr16-85124820-4	chr16	85124316	85125316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	48891.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.2632929738057	7.44263658019853	7.14527817115891	6.96411836009785	7.15950725360865	6.99125221746634	-0.374041210687681	0.129131495027426	0.480618862493977
Merged-chr11-86257093-2	chr11	86256593	86257593	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027421, intron 1 of 24)	intron (NM_027421, intron 1 of 24)	475.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	5.03482259203901	5.26143051912214	5.06833977366616	4.78895080900042	5.15257369539702	4.79563055273647	-0.404835787980002	0.304683743590535	0.701027910687293
Merged-chr2-68983707-4	chr2	68983207	68984207	+	790.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	ID_B1|SINE|B4	122266.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.85153609768474	4.27478316735097	3.96555385007582	3.79706273817983	3.84585024599878	3.83153951306185	-0.682877202565179	0.194082045189273	0.581296921414137
Merged-chr6-140764299-2	chr6	140763799	140764799	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137414.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.91298875767674	4.06428891504732	4.29000704880641	4.27517197327069	4.37154120661993	4.26966224286874	0.613342842676634	0.197715800340519	0.585818335460382
Merged-chr1-70180546-2	chr1	70180046	70181046	+	892.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025728, intron 2 of 7)	intron (NM_025728, intron 2 of 7)	228931.0	NM_025728	66722.0	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	2.96080696685708	3.17469719096757	2.97499399316692	3.03007979049042	2.71216632555562	3.10709123906092	-0.403381279159652	0.575287244242704	0.871001510588939
Merged-chr17-34197674-4	chr17	34197180	34198180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010724)	promoter-TSS (NM_010724)	-515.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	5.69650093279971	5.86210454033706	6.11488801643636	6.25129311644773	6.53589508482221	6.35449125166855	0.848976414019439	0.00489852584355053	0.06035098658923
Merged-chr9-21547179-4	chr9	21546672	21547672	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021531, exon 1 of 16)	exon (NM_021531, exon 1 of 16)	278.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	6.24329958527845	6.01320999137771	6.09637163163119	6.19652835762544	5.88119238531061	6.13535709892913	-0.0877805451167911	0.769064658376871	0.942996711234581
Merged-chr11-115184694-2	chr11	115184194	115185194	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 3 of 6)	intron (NM_025400, intron 3 of 6)	2622.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	3.0870927456644	2.97499518235665	3.34039004602111	3.62770606301226	3.42621256553283	3.356221921322	1.40190886224292	0.0308836033790948	0.21267589753933
Merged-chr7-38028897-4	chr7	38028460	38029460	+	780.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9408.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	5.23710082036065	5.33826335451882	5.02420961606982	4.72048962469388	4.76665767666275	4.90661433073111	-0.90883293020878	0.0167880230948296	0.143761181305944
Merged-chr15-31224301-4	chr15	31223814	31224814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-71.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	7.05009068976969	6.89127624136219	6.85815911769008	6.79103100780519	6.59019980540502	6.44627033074344	-0.494085746272679	0.0602391552880571	0.317741973578996
Merged-chr10-83168618-6	chr10	83168092	83169092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	169225.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	6.01659550804152	5.6520524100113	5.64149681853534	5.17928339961523	5.13185724348612	4.67090685149796	-1.47806257389589	0.000177027442391427	0.00453233828507873
Merged-chr5-18007253-4	chr5	18006746	18007746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	44676.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.24869847396326	6.3576423578847	6.01514429181905	6.1266107283459	6.38424952314802	6.14459598219895	0.0127387622588035	0.965563090818737	0.991995030766812
Merged-chr17-78249817-3	chr17	78249285	78250285	+	775.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	49537.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	4.2503809819225	3.95801481282204	3.891935376082	3.69352760460651	3.65390465402073	3.91155878155262	-0.937279477664579	0.0788779472281295	0.371016180495093
Merged-chr9-60744692-4	chr9	60744182	60745182	+	853.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31561.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	2.56359984459409	2.59060730970442	2.78751714376431	2.49009290338522	2.30626888170793	2.97284586904355	-0.148429938184171	0.863877504556653	0.968269312109804
Merged-chr8-107096551-4	chr8	107096065	107097065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286200)	promoter-TSS (NM_001286200)	-20.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	7.49400097099044	7.67107857913425	7.64550640364124	7.72335208847085	7.55808536343222	7.47884585372088	-0.0169059968430479	0.940943687441925	0.986888338850358
Merged-chr9-65531646-2	chr9	65531146	65532146	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48441.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.09903344959526	3.04629857354882	3.11669874744489	3.26514068783605	2.84635751503345	3.18907916385863	0.0967085864984948	0.887469756533558	0.973836995667151
Merged-chr10-127263182-4	chr10	127262687	127263687	+	784.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008447, exon 1 of 28)	5' UTR (NM_008447, exon 1 of 28)	176.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	3.23047823693889	3.24675934465964	3.27633141986036	3.27304848014953	2.97911136875039	2.92265068545074	-0.783136182653303	0.245271864563038	0.642393755173178
Merged-chr6-108326650-3	chr6	108326168	108327168	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	113572.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.07723976174845	3.3509636468456	3.29320591964607	2.83335349643644	2.88181345029394	3.19973982349852	-1.22278708579274	0.0817735576657834	0.378285105145633
Merged-chr2-27697309-3	chr2	27696809	27697809	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-11983.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.64135055330955	5.80931512778097	5.94440997746321	5.77418575490055	5.74341316091358	5.96004425281222	0.0449290386088453	0.885790443142456	0.973636976161493
Merged-chr13-76056439-4	chr13	76055924	76056924	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175495, exon 1 of 1)	exon (NM_175495, exon 1 of 1)	572.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	2.43049687358429	2.45699481234162	2.57833940158043	2.35672852578929	2.35164286827	2.52819920400712	-0.47892819710958	0.553026456386962	1
Merged-chr8-86920527-1	chr8	86920027	86921027	+	662.5	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35269.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.40280446625205	2.49992790487634	2.65543933049491	2.30869037972641	2.18870074564033	2.72851266576966	-0.559652060333925	0.530738829682565	1
Merged-chr5-143048392-4	chr5	143047887	143048887	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	64633.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.6325668099305	5.31844650412733	5.78340917667128	5.42649785435872	5.43108115113645	5.84424579375676	-0.0235783949560551	0.947483198996824	0.988008807662239
Merged-chr16-91601962-4	chr16	91601452	91602452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4272.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	5.77616431291284	5.81931636056378	5.46331636160863	6.00968784107965	5.9283836347627	5.49593696010457	0.24325302335076	0.47731722304998	0.823237639056184
Merged-chr4-32359352-3	chr4	32358859	32359859	+	989.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58076.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.18071824718938	6.3180850023016	5.85562607718582	4.65964904822416	4.4183850725152	4.79820844305442	-3.15335758607657	3.59405848446589e-16	1.25127371705204e-13
Merged-chr19-53332849-2	chr19	53332349	53333349	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 2 of 5)	ORR1D1|LTR|ERVL-MaLR	2441.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	7.01908869843037	7.23229992974573	6.91323532308478	6.88282975997212	7.19020257449867	6.94271982126127	-0.0741266690385355	0.77540203522453	0.944657200275932
Merged-chr9-70942802-4	chr9	70942292	70943292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324472, intron 1 of 9)	intron (NM_001324472, intron 1 of 9)	-7984.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.92031516054906	6.08371018975193	6.1433985044964	5.66463030265765	5.52646032064948	5.45388918398152	-0.889619666428166	0.0044290141195503	0.0561868283060743
Merged-chr10-62482681-1	chr10	62482181	62483181	+	542.0	f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	B1F|SINE|Alu	3917.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	3.59536515574739	3.50545684292754	3.47615431555816	3.70654984420251	3.40739110798054	3.60204926121724	0.161009102983846	0.779597022001232	0.945842395443163
Merged-chr11-78115514-4	chr11	78115024	78116024	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20851.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	3.51444308615937	3.33867073815346	3.84314365125514	3.76808813052258	3.70891331606196	3.60999345284373	0.436468777156032	0.455660247169093	0.811093409198074
Merged-chr8-120131324-4	chr8	120130826	120131826	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-13603.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	3.58964789527351	4.00872753240965	4.09244922013502	3.5767888487844	3.53580604817354	3.93674875572762	-0.721383038175168	0.213816869693735	0.606900020244801
Merged-chr7-127252592-4	chr7	127252084	127253084	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360916, intron 2 of 2)	B2_Mm2|SINE|B2	7483.0	NM_001360916	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	3.3219784964878	3.44216035240677	3.67464655649735	3.62908795914072	3.4829338846568	3.64310908484963	0.374369470137597	0.520409486509862	0.846441075755749
Merged-chr19-6061204-4	chr19	6060749	6061749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013859)	promoter-TSS (NM_013859)	42.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	7.04291127440994	6.99836472343747	7.02070554201222	6.60781939552564	6.62831675374402	6.81530851204156	-0.527784531599387	0.0330437914550076	0.221627260953432
Merged-chr6-29269983-2	chr6	29269483	29270483	+	987.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2505.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	5.50510377449445	5.28049015295562	5.60669125251195	5.36348490551533	4.85762811657575	5.30191878662094	-0.560929592020583	0.139498009809607	0.499084106249493
Merged-chr19-46499967-4	chr19	46499475	46500475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1673.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.58695137413019	6.51348233398831	6.70918659356762	6.85668485479068	6.86908144461764	6.84334949503498	0.404801612325231	0.106899786139582	0.436454439973323
Merged-chr8-41292213-4	chr8	41291712	41292712	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 21 of 37)	intron (NM_023662, intron 21 of 37)	52453.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	3.24460805479921	3.19996944319481	3.49897156595538	3.86458185794699	3.85161460534599	3.83222669592124	2.00890734823252	0.000721671163102556	0.0139911377604685
Merged-chr10-17221651-4	chr10	17221153	17222153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-125871.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.73120669903737	4.13457479729928	4.16927336820288	3.85389013150008	3.71504404052557	4.14967768751459	-0.341556390348994	0.530707351826674	0.851304720575858
Merged-chr9-95662065-2	chr9	95661565	95662565	+	642.325012	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	24437.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.63444763566817	3.49366386947442	3.7557246689285	3.80615384955335	3.59993185798202	3.562825388799	0.123775444008463	0.825249563968465	0.9587869939358
Merged-chr4-74250705-2	chr4	74250205	74251205	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172095, intron 1 of 21)	B2_Mm1t|SINE|B2	-1174.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	3.30571712690518	3.1430794708547	3.21819385211247	3.15193154452261	3.02812270303015	3.05329374990177	-0.636587966626973	0.324640950277329	0.717545667286724
Merged-chr2-109230988-4	chr2	109230477	109231477	+	971.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	47313.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	3.2161853756972	3.2777477495411	3.41854149527901	3.44581573688734	3.44538986921513	3.20186808193098	0.287420237902061	0.640969729460225	0.898687924380943
Merged-chr4-33248650-4	chr4	33248113	33249113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033225, exon 1 of 2)	5' UTR (NM_001033225, exon 1 of 2)	174.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	8.44294029531717	8.2900871058174	8.27895531519655	8.3758671641205	8.38471707147612	8.23935563683722	-0.00486344931718996	0.981244415602175	0.995687678606673
Merged-chr19-16015868-4	chr19	16015391	16016391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30816.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	5.55016348956879	5.51223629519796	5.81942172554595	6.18940417790283	6.00288908140731	5.99904947477167	0.794146816747596	0.0105107275583806	0.103992463576425
Merged-chr2-11197198-4	chr2	11196687	11197687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	24805.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.24940713061751	4.95108080177487	5.01971969424475	5.36181068723887	5.24029365916936	5.61978588361558	0.662574580296137	0.0745071211198353	0.359191984230562
Merged-chr4-132530360-2	chr4	132529860	132530860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007512)	TTS (NM_007512)	5054.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	4.32285673635854	4.09025363368868	4.38717935768081	4.10026908988376	4.23811320420884	4.53273332815052	0.0726627047710334	0.879239249022485	0.972083703102674
Merged-chr17-86167984-3	chr17	86167497	86168497	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011104, exon 1 of 15)	5' UTR (NM_011104, exon 1 of 15)	212.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	5.12927505737498	4.83856954351815	4.80034228293202	5.00253653420836	4.52666772905702	4.90433726901507	-0.259979168828085	0.536303370677966	0.85392789486322
Merged-chr1-91459455-4	chr1	91458948	91459948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011066)	promoter-TSS (NM_011066)	-120.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	7.73272466946793	7.70892980215274	7.02505966331469	7.70271856718081	7.62709905286823	7.16732309002925	-0.0172491466639888	0.954491215214205	0.989606357454991
Merged-chr11-116020726-4	chr11	116020277	116021277	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	3727.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	4.98875987177346	4.59282097199367	4.36706865184449	4.54382498779501	4.41267442867183	4.613234034918	-0.398455584397511	0.381117597746762	0.763032822617589
Merged-chr4-102569223-3	chr4	102568727	102569727	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177980)	promoter-TSS (NM_001177980)	-833.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.93577824133935	5.02187411258666	4.88719235756187	4.72307298319266	5.09732423679248	5.0243822203032	0.0201559592311894	0.958717490825504	0.99015359851262
Merged-chr4-132600707-4	chr4	132600204	132601204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36637.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.06993878216077	6.87020182263706	6.82610701382698	7.10255527209375	7.09506132579279	7.00006987278431	0.210620752199864	0.39152588924791	0.770550064867667
Merged-chr15-25356020-2	chr15	25355520	25356520	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57744.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.16229688798675	6.07292374744171	5.90959256687131	5.9662759166928	6.18622863049842	5.92162579175808	-0.0339335944703605	0.909836751459417	0.979653930166868
Merged-chr8-84706915-4	chr8	84706434	84707434	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5477.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	5.68866905940581	5.65444197580073	6.70176290875898	5.93094986994794	5.71200505314329	6.48440081542508	-0.0596301581102169	0.930428493570064	0.98452482441856
Merged-chr13-96107808-1	chr13	96107308	96108308	+	549.0	f0_c57.idr	intron (NM_029210, intron 1 of 12)	intron (NM_029210, intron 1 of 12)	24769.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	3.03517264488832	2.92086597484368	3.21046106879598	3.71260501420228	3.33483836906955	3.50966302971977	1.99296076309528	0.0028909390403977	0.040937586057422
Merged-chr11-4122729-4	chr11	4122247	4123247	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4018.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	5.00956576433929	5.16715185271782	5.15770453871888	5.06249454838324	5.02038354790227	4.94343443806135	-0.209727685784796	0.5661184426192	0.867186733679279
Merged-chr11-34053647-4	chr11	34053150	34054150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	LTR103b_Mam|LTR|ERV1?	6722.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.90547342393504	6.90095746205057	6.94154943363104	6.90599517211771	7.23712129329797	7.0666382829466	0.255686063432138	0.305484398310565	0.701604675920959
Merged-chr13-44404411-1	chr13	44403911	44404911	+	642.0	f0_c57.idr	Intergenic	Intergenic	-35316.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.76880857096912	5.30054187352565	5.0922498493486	5.53980297065405	5.54209604036691	5.61343231139422	0.964995376336912	0.00964922682669724	0.0980461758581114
Merged-chr1-138939882-4	chr1	138939364	138940364	+	980.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-23845.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	4.37341024670904	4.38223564634849	4.14412975259763	4.51186899617503	4.71134018487198	4.26533520893739	0.531792825180823	0.252252910227901	0.649735854202467
Merged-chr10-39370646-6	chr10	39370106	39371106	+	918.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	807.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.31218523609029	4.7570052861319	4.97876710640073	5.02235073971819	4.53919276037549	4.56328263406686	-0.684376526566715	0.122975126101678	0.469148413250216
Merged-chr13-12413183-3	chr13	12412668	12413668	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	17793.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	6.53028826351465	6.71371567787484	6.59049053794259	6.32610478856906	6.48906338289527	6.41927823869076	-0.322324389677017	0.224954014192661	0.619841499865652
Merged-chr18-36723884-2	chr18	36723384	36724384	+	853.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	2931.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	3.68805387076234	3.62056124099973	3.86531111084359	3.83326428353887	3.38982608684695	3.93375517923535	0.0280739508543526	0.961640781713798	0.990648883228567
Merged-chr13-111930117-4	chr13	111929621	111930621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62185.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.58778143206005	5.79048260211153	5.12730500230421	5.11985002145674	5.20568025574279	5.00398959424634	-0.83907708334973	0.0283627907435027	0.201589740512973
Merged-chr14-45218063-4	chr14	45217588	45218588	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 2 of 20)	intron (NM_001310534, intron 2 of 20)	1337.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	4.81291033893786	5.13462453755335	5.04418019952983	5.12478415179411	5.11662834634311	5.33146941321318	0.384800041865044	0.304733344544632	0.701067097814987
Merged-chr6-114921878-4	chr6	114921379	114922379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-58.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.18358735334301	6.37013959337547	6.36476228991637	6.50954462868226	6.4004746461782	6.49722104101202	0.26241211587782	0.332288961325278	0.723518174479399
Merged-chr19-6275352-4	chr19	6274869	6275869	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1527.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	5.83965379337738	5.44125367664047	5.67000858732398	5.43628400044286	5.6251144354426	5.53948997714746	-0.225850431061855	0.502212103234009	0.836366262631032
Merged-chr16-27399632-4	chr16	27399125	27400125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	10669.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	5.52528307074909	5.5521342995303	5.82563216693614	5.56571773695018	5.7045738041679	5.79087179877639	0.105069944910891	0.746033838249296	0.936260355453809
Merged-chr13-49684572-2	chr13	49684072	49685072	+	586.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2442.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	4.71278394076286	4.78640202412345	4.81371425570321	5.02173351176539	4.81578544275703	4.80277815609598	0.260179261409974	0.505075065997011	0.837928144581384
Merged-chr1-33505004-2	chr1	33504504	33505504	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	164790.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	2.11425211728415	2.0823796262734	2.28528048523845	1.9605843168252	2.07499928027144	2.16744578204372	-0.684447235679204	0.456430261192561	1
Merged-chr7-89403808-4	chr7	89403301	89404301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	421.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.3598372673583	6.32114657803299	6.02410905490622	5.66935101594216	5.81728671106145	5.41660748729068	-1.03142017705184	0.00143292733745626	0.0238796350681075
Merged-chr8-56551538-4	chr8	56551045	56552045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009951)	promoter-TSS (NM_001009951)	411.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	7.72676064751438	7.88937391846752	7.55074032055986	8.06522104434086	8.14554606808452	7.57678575894011	0.32387232831463	0.212170120600908	0.604576945822415
Merged-chr11-120991315-4	chr11	120990802	120991802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139059)	promoter-TSS (NM_139059)	31.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	8.08682415035144	8.32344303264158	7.79300041481105	8.09137132819214	8.05948053339474	7.63390969254063	-0.200265639811987	0.44387028215747	0.803884349333946
Merged-chr11-37043952-4	chr11	37043463	37044463	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99722.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	5.30742557066791	5.38126646240166	5.1784067866356	5.49700029415849	5.41992593607373	5.20864095553048	0.177052395271641	0.610574755809909	0.885670280170683
Merged-chr15-25302831-3	chr15	25302324	25303324	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110940.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.97778244128983	8.25776587623287	7.64093283124526	7.88119868700184	8.24224729347892	7.69747524060903	-0.0316922470400932	0.908805854588155	0.979318923423343
Merged-chr5-99229048-2	chr5	99228548	99229548	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 9 of 13)	intron (NM_181318, intron 9 of 13)	23879.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.42841335950408	4.37932050353306	4.54471442963751	4.17720268943374	4.60320496941608	4.61049527583672	0.0812894817859431	0.857845965772865	0.966785186918462
Merged-chr4-34087311-2	chr4	34086811	34087811	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1C-LTR_Mm|LTR|ERVK	-37244.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	2.94895098805547	2.78064237673908	2.95574540812426	2.86772654199567	2.86380127368097	2.96896743907501	0.0154536707769721	0.982232192493164	0.995992226862322
Merged-chr5-23617100-4	chr5	23616604	23617604	+	882.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-533.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	7.30602253063201	7.85198550784706	7.42065092307561	7.5731056708628	7.67060085716848	7.35580584476225	-0.0136994671839857	0.959055784501334	0.990174309444982
Merged-chr6-112721723-3	chr6	112721236	112722236	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-25066.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	3.34924499484182	3.28744381208366	3.40542190756742	3.2316493574933	2.93081059486483	3.67597949227602	-0.131419758207006	0.849845922827415	0.964746847431705
Merged-chr13-101812116-3	chr13	101811607	101812607	+	839.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43890.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.91235842865082	3.60613968068192	3.87344189553405	3.58391794602876	3.64040618528944	3.79554030104604	-0.431280604237286	0.432524645450624	0.797386699146392
Merged-chr11-109473830-4	chr11	109473348	109474348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134038)	promoter-TSS (NM_134038)	-252.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	8.66029722289754	8.63097044467262	8.15124302401362	8.24224337421807	8.36331439067164	7.99086741099023	-0.410118114256016	0.0997422380727992	0.421136841555491
Merged-chr10-67291279-4	chr10	67290757	67291757	+	910.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5976.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	7.25867115841353	7.05397876015934	6.61018353063939	7.43839996245354	7.42061218138709	6.75929418169349	0.360772098808613	0.256478044581421	0.653552886970565
Merged-chr8-25077955-3	chr8	25077434	25078434	+	828.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	23877.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	4.13456750136426	4.56838522914602	4.72937665247352	4.4830456276194	3.99004620269416	4.17785451104121	-0.686075885991698	0.177640109589569	0.558706727133464
Merged-chr8-126684175-4	chr8	126683673	126684673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90737.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.98962042988452	3.83304281719281	3.50456742089631	3.73865233648454	3.55803361226385	3.79573011933966	-0.345365632881364	0.546281509956821	0.858597153066378
Merged-chr9-90056674-3	chr9	90056201	90057201	+	833.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	2434.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	4.78776145216923	4.8537935474781	4.80676559903463	5.96547348461348	5.97616535964925	5.57510282223517	2.06913509587058	8.58271193930096e-09	7.90864114114456e-07
Merged-chr1-153425149-4	chr1	153424665	153425665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033162)	promoter-TSS (NM_001033162)	-44.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	4.66237133930572	4.26055034580595	4.18976130347898	4.35166612171156	4.13960541897053	4.30639623361385	-0.346414335134779	0.469311632832759	0.818943090863774
Merged-chr19-55767431-4	chr19	55766924	55767924	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	25614.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.81073111408684	5.6674004255866	5.91617577474541	5.79090019968044	5.68276478487206	5.37344556625549	-0.28864729818794	0.381866140304011	0.763493711762409
Merged-chr7-75575504-4	chr7	75574997	75575997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	119963.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	6.40720640938228	6.56575118092659	5.48312371985836	5.08278489824722	5.18682540104051	5.69751812315585	-1.60812059675111	0.000136090219963328	0.00367536352570874
Merged-chr10-41571234-4	chr10	41570741	41571741	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	3225.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	4.36877964921731	4.10669974343689	4.16040951961553	4.47637436409606	4.70964047365197	4.74042791032739	1.08596188607213	0.0162231640461242	0.140132568664996
Merged-chr12-31635438-2	chr12	31634938	31635938	+	941.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-780.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	4.2597532199569	4.87510027164842	4.49876823060617	4.47097384593648	4.58122709612137	4.38904257636072	-0.219674076344993	0.639111696312686	0.897933372058388
Merged-chr3-137946674-2	chr3	137946174	137947174	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28119.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	7.12951186971675	7.22062241811594	7.05473986155636	7.05144843532825	7.48986755952196	7.20152601220465	0.192295497976604	0.452078653047769	0.809286173636239
Merged-chr16-22043916-3	chr16	22043410	22044410	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 15 of 16)	intron (NR_027488, intron 15 of 16)	34426.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	4.11322117263491	4.18355121349188	4.79063344130845	3.96441877121955	3.82394951115368	4.26676580208804	-1.00795312290203	0.0613852713168514	0.321302488251404
Merged-chr14-103099091-6	chr14	103098658	103099658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-154.0	NM_001347601	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	8.44130160403109	8.22140295961528	7.70030147356843	8.19916309627939	7.80649019051154	7.89771043384805	-0.262365198934197	0.342979093636861	0.731856773485056
Merged-chr2-150927287-4	chr2	150926785	150927785	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 5 of 6)	intron (NM_027014, intron 5 of 6)	17691.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	6.06699330846186	6.12417992264895	6.20959733705214	6.37359793955788	6.35618491363158	6.11995708267011	0.2778069368934	0.325450453523345	0.718159390122652
Merged-chr18-34380175-1	chr18	34379675	34380675	+	572.0	f0_balb.idr	Intergenic	Intergenic	-6760.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	4.93976624218888	4.74782773109708	4.71373812039023	4.53753846837339	4.74979420097332	4.65909197588893	-0.353755212264915	0.385598772229985	0.766591069902819
Merged-chr17-73067131-4	chr17	73066613	73067613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40872.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	7.11444179892061	7.08785148066257	6.78136367801861	7.20561549821123	7.34578187342707	6.96235343842708	0.268434139099633	0.305869681681799	0.701955607837911
Merged-chr8-40512672-3	chr8	40512191	40513191	+	997.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	908.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	7.11921866216822	7.15603851721412	6.64602618768595	6.75255422511262	7.06599535628521	6.68805965137952	-0.227615624262027	0.427815695246283	0.794725559921005
Merged-chr16-36662886-4	chr16	36662387	36663387	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	3190.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.91103509145608	7.92555556702057	7.58710248141195	7.61204887348956	8.13344392154123	7.52218587591065	-0.0359201596676019	0.895641895624473	0.975665889379756
Merged-chr3-55354917-4	chr3	55354378	55355378	+	814.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-106850.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	5.70209525945655	5.9392273217169	5.87606740253738	6.20241535914869	6.18565957338706	6.20565794730684	0.613362532576553	0.0358194560427185	0.232574496480101
Merged-chr6-145275972-2	chr6	145275467	145276467	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25415.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.56920878303097	7.66380537044569	7.16367987163876	7.16550125237281	7.2908480369401	7.04813110012484	-0.465922157397716	0.0725988597731131	0.354018766695052
Merged-chr5-99571826-1	chr5	99571326	99572326	+	548.0	f1_balb.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157234.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.12944978182678	3.77919509909043	3.86068627483295	3.58058935401648	3.87101976131328	3.88007194707878	-0.468833587813604	0.390497528209473	0.76961112307546
Merged-chr14-61677815-2	chr14	61677315	61678315	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	MT2B1|LTR|ERVL	4558.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.14850129904746	6.00954416355605	5.64929892698155	5.50167386830634	5.90963149211768	5.71234912803438	-0.420886964308846	0.214707259575796	0.607872121632624
Merged-chr19-3586803-3	chr19	3586307	3587307	+	781.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 21 of 22)	intron (NM_008513, intron 21 of 22)	-11058.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	2.91555227209834	3.01548262342409	2.8880244589556	2.75508588609836	2.47771060980316	2.83939959331552	-1.32818547589099	0.0902399617256007	0.39948322703042
Merged-chr15-101261820-2	chr15	101261255	101262255	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5091.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	4.99331374120233	4.61605154346186	5.17902868554788	5.16895031148072	5.1176061859445	5.49910621021352	0.678742381738144	0.0935834487539976	0.407445386610443
Merged-chr7-127846292-2	chr7	127845792	127846792	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009294, intron 7 of 10)	intron (NM_009294, intron 7 of 10)	4484.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	3.49806748136893	2.96623560164691	3.87226308325481	3.22171725607889	3.11126202509992	3.51985546463583	-0.746271873442916	0.304971418519955	0.701230797737315
Merged-chr7-88243250-4	chr7	88242748	88243748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34837.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.29406676616205	7.50219669106997	7.15121969112254	7.52838798873151	7.86002255079504	7.43329938446565	0.436612657882924	0.0909365330477505	0.401328473630912
Merged-chr11-87595630-3	chr11	87595144	87596144	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133215, intron 2 of 18)	CpG	3478.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	2.78457468642908	2.62141081551097	2.68975808162023	2.51643040817019	2.36595237411095	2.50846873042142	-1.46238017068045	0.0706403698280141	1
Merged-chr16-91001298-4	chr16	91000783	91001783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	9812.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	7.35736609908914	7.09334824575807	7.05421329136602	7.25990550129241	7.43301415888538	7.15087982078446	0.16956014723499	0.498114705267303	0.833856267944725
Merged-chr19-55315928-4	chr19	55315432	55316432	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293685)	promoter-TSS (NM_001293685)	104.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	7.64645261764635	8.07707529061472	7.67350482267016	7.8003586376801	7.86861324484102	7.51373269257563	-0.110773776972132	0.663225137557643	0.907110065208622
Merged-chr19-4293725-2	chr19	4293225	4294225	+	655.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 2 of 20)	B1_Mus1|SINE|Alu	-10588.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	4.7020184685968	4.69503091851825	5.43298652134611	5.33445554345995	5.3527287180515	5.57348134431625	0.90654187839849	0.0319475728573451	0.216861938514763
Merged-chr10-25295152-3	chr10	25294619	25295619	+	861.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	4044.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.79160602034238	3.80384021224246	3.95640740298617	5.42263050066069	5.69899757475555	5.0166402652508	4.2380706400972	6.65036512145873e-15	1.82628244563148e-12
Merged-chr4-11156349-4	chr4	11155855	11156855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021897)	promoter-TSS (NM_021897)	-86.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	7.82940761276947	8.19088000271704	7.69167543999864	7.69687700952901	7.93259440968072	7.57471787156754	-0.255233684590983	0.318371194447778	0.712162760030396
Merged-chr17-70756024-3	chr17	70755506	70756506	+	840.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	90771.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.44103415452513	4.40102520839855	4.46922176160634	4.06740487238383	4.08026702319486	4.23479869436989	-0.84938417335389	0.0623815574590905	0.324555772256911
Merged-chr10-39442213-3	chr10	39441712	39442712	+	942.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	L2b|LINE|L2	72413.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.10359325690574	5.3228362416531	5.25934202596402	5.42427398590315	5.14946481705151	4.85178937033908	-0.121942370628268	0.750907444593942	0.937674068369247
Merged-chr4-83265783-2	chr4	83265287	83266287	+	772.5	f0_balb.idr|f1_balb.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58402.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.77404368671234	6.1219623619592	6.10516485175599	5.55743345570873	5.74118098981143	5.77928030998657	-0.561578812474815	0.078256295425085	0.369397247959209
Merged-chr15-6578147-4	chr15	6577624	6578624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1723.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.54107158308456	6.22399922213039	6.60259434718821	6.68794720062272	6.56230988413699	6.62876774072859	0.26700921711128	0.332353246249388	0.723521765316285
Merged-chr8-109607828-4	chr8	109607327	109608327	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020046, intron 1 of 8)	B3A|SINE|B2	846.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	4.61077669292147	4.77870238191039	4.86065954856474	4.68561461081157	4.86705327849511	4.88950377924282	0.155993005576918	0.696039829864965	0.919291538728398
Merged-chr5-62843483-4	chr5	62842990	62843990	+	972.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 6 of 8)	Tigger5b|DNA|TcMar-Tigger	29667.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	5.47134903307817	5.29487863121076	5.13080702482925	5.37193179300987	5.39346564648248	5.59480565949304	0.263136911789765	0.451686329386359	0.809233899859178
Merged-chr4-129782044-4	chr4	129781554	129782554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38425.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.21895196864981	6.19157639394091	6.42890264389293	6.40723908493476	6.59850654384437	6.60774816771754	0.433413898090846	0.113741442696937	0.45054736570155
Merged-chr17-80497363-4	chr17	80496874	80497874	+	930.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16921.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	3.47624310575805	3.33312877881804	3.4945140680638	3.7259104264272	3.78992650931196	3.62121979347662	1.02173625340821	0.0712364134246108	0.350098858309754
Merged-chr17-6006324-4	chr17	6005831	6006831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357667, intron 6 of 24)	intron (NM_001357667, intron 6 of 24)	-1249.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	5.19198326269565	5.09184800586097	4.78530058643372	4.71932074793432	4.75823043561966	4.50403396026131	-0.825244711734086	0.0446571543796247	0.266348828157108
Merged-chr12-34499305-2	chr12	34498805	34499805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	29584.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.30929615199017	3.59486941620791	3.44623062288382	3.57664247074931	3.51019957870596	3.62528091777766	0.401527409320458	0.490412992113301	0.830053405840466
Merged-chr11-109474366-2	chr11	109473866	109474866	+	996.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029842)	promoter-TSS (NM_001029842)	-770.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	5.83946569807001	5.39072895143638	5.3593609279479	5.39679943507831	5.31547413749085	5.25966872965188	-0.445037598257123	0.215516449859383	0.608899282194137
Merged-chr18-56700321-2	chr18	56699821	56700821	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7492.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.23914573163285	3.1589800390938	3.46733009411686	3.5815057351705	3.65187468531664	3.69392796767549	1.35962664684044	0.0234000501617385	0.179205832844725
Merged-chr19-53406027-4	chr19	53405557	53406557	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15423.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.6384544474449	3.41309876239874	3.3832096176982	3.06899776020843	2.76623423408324	3.03813559083129	-2.48376811833269	0.000741977633151424	0.0143012450542654
Merged-chr7-16312440-4	chr7	16311925	16312925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 2 of 3)	CpG-12701	2842.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	7.91281012183085	7.63358054336732	7.70509865939341	8.13980310361615	7.91601165404514	7.84740089210829	0.313290443205979	0.176453696154189	0.556740450083336
Merged-chr9-31130080-4	chr9	31129596	31130596	+	905.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1703.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	2.64819103943673	2.54240069245407	2.54464803378677	2.54342207033807	2.37653888315464	2.68109766939318	-0.271727151431504	0.732341102083848	1
Merged-chr18-75462768-4	chr18	75462269	75463269	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-51876.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	2.75359108903558	2.64441841034658	2.81443628818207	2.81815600365254	2.43771853535265	2.8875229743728	-0.059528275894971	0.940016345360743	0.986764565700007
Merged-chr1-87658743-2	chr1	87658243	87659243	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	38431.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	7.19204667050086	6.90248657989044	7.21431108779789	7.23702307152925	7.25024279784376	7.13879692182823	0.160339693412367	0.514423632818648	0.843107848235413
Merged-chr5-23453718-3	chr5	23453212	23454212	+	821.022217	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026984, intron 2 of 25)	B2_Mm2|SINE|B2	19283.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	2.26925133250578	2.27740363212653	2.33495792144388	2.62416347860681	2.30265618480899	2.54106038506675	1.29463500345856	0.126823878239043	1
Merged-chr2-18064577-4	chr2	18064085	18065085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	0.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	8.95223000421887	8.93839868428505	8.42195803074095	8.719053537064	8.70385173060923	8.67638493475741	-0.137865518169606	0.555282139708369	0.863191483122339
Merged-chr11-96034342-2	chr11	96033834	96034834	+	666.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-551.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	4.90830936850573	5.23449871687093	5.0954381259672	5.49085508869752	5.5280303557009	5.22977908132185	0.689381296913442	0.0581209998054668	0.31146597229428
Merged-chr5-64886315-4	chr5	64885809	64886809	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46390.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	5.52140174958085	5.26552467840397	5.1031546466258	5.40919328182617	5.41450433827368	4.85210569683448	-0.102141315787674	0.797000535280662	0.951597367479313
Merged-chr1-144002839-4	chr1	144002340	144003340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009061, exon 3 of 5)	exon (NM_009061, exon 3 of 5)	1309.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.98357526072756	7.2319805838223	6.66791104800812	6.95391472322801	7.10951971824543	7.08409234876188	0.087467753057531	0.747396451191292	0.936600911319824
Merged-chr7-24546605-3	chr7	24546100	24547100	+	842.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037143)	promoter-TSS (NM_001037143)	-99.0	NM_009532	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	5.99171575509523	6.41340978960221	5.9495898232558	6.12695128968537	5.88360754593473	5.75125514827533	-0.36265960117362	0.265406373589126	0.663118548853595
Merged-chr13-49213777-4	chr13	49213214	49214214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	2312.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	4.25405691833929	3.986096054362	3.66545641709779	3.90538660255706	3.71200920432454	3.73877268649858	-0.654376007227526	0.239407279644382	0.636282788382435
Merged-chr19-3683507-2	chr19	3683006	3684006	+	642.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	3058.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	3.57735686141578	3.72328816377917	3.63915401570643	3.75878830320634	3.8859785790938	4.00824137466097	0.76951747293562	0.15049177515535	0.517334494681425
Merged-chr13-56712378-3	chr13	56711884	56712884	+	935.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	8716.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	5.83077536381497	5.59392358955863	5.08819764159789	5.76920303417105	6.18605556900816	5.4806721565832	0.551893466921972	0.17176123894505	0.550097814813575
Merged-chr10-44565321-4	chr10	44564845	44565845	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106597.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.65258196102069	3.48695976949581	3.51151972778987	3.51140007163813	3.28885227516841	3.68641132712597	-0.207954576456732	0.725546085409542	0.929698613727862
Merged-chr12-3912458-2	chr12	3911958	3912958	+	892.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	20714.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.89925082766243	6.20042726141681	6.12471859166711	5.88040976813703	6.16683612585127	5.83431087900042	-0.171112087652207	0.582030783067348	0.873508337816738
Merged-chr6-86371483-4	chr6	86370980	86371980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-60.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	7.81926946962565	8.12063068079727	7.71276749920464	7.92324184479797	8.1883393493204	7.54353977948202	0.0295149180567417	0.912969976986083	0.980521208172103
Merged-chr10-39402749-4	chr10	39402233	39403233	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	MTC|LTR|ERVL-MaLR	32934.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.57156531516861	3.42623028372882	3.90455029047174	3.43518791687117	3.07366428192178	3.43172338683956	-1.2163972663776	0.0592931178722241	0.315411184753358
Merged-chr16-62858161-4	chr16	62857671	62858671	+	760.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	MTE-int|LTR|ERVL-MaLR	3864.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	4.31372417196794	4.53441775286285	4.5374659559677	4.5356357305893	4.40256178413738	5.11788432617903	0.594866900976912	0.208736006316926	0.59976192595113
Merged-chr4-138972260-4	chr4	138971766	138972766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305423)	promoter-TSS (NM_001305423)	-17.0	NM_001305423	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	8.5255411105861	8.68197307900615	8.17260189104495	8.40338593627773	8.79125349509653	8.01999447517296	-0.0410695354985581	0.883815317010158	0.973446302281334
Merged-chr6-29849762-2	chr6	29849262	29850262	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-3979.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.03523726004222	3.77163267208116	3.67335850169082	3.73887394659624	3.45833035956389	3.74457780315229	-0.643836194442397	0.253685987081447	0.651101283561784
Merged-chr5-124551543-2	chr5	124551043	124552043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1321.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	4.41184282931829	4.55451282123933	4.54057052297807	4.35367966741769	4.67109341551855	4.93589911811743	0.399857601135566	0.368995895636896	0.753809303364759
Merged-chr6-39275264-4	chr6	39274755	39275755	+	915.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68482.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.11811743959295	4.3828626633145	4.55988068740911	4.27438708818043	3.98820562157244	3.84884714832697	-0.847023644284183	0.0979862325279566	0.417332715124445
Merged-chr3-95951233-4	chr3	95950739	95951739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21982.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	9.52184195091931	9.54463091580526	9.13530273280002	9.2723369711878	9.50182204373622	8.96962392854954	-0.197634715011713	0.414061091878312	0.785615201854629
Merged-chr4-132756452-2	chr4	132755952	132756952	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	719.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	5.08319744742129	5.22138347241714	5.26698446260838	5.33141635945495	4.89478589866246	5.06663317200076	-0.171734312436307	0.648550208375358	0.901859560058813
Merged-chr2-153632371-2	chr2	153631864	153632864	+	871.0	f0_balb.idr|f1_balb.idr	intron (NM_001195390, intron 1 of 9)	intron (NM_001195390, intron 1 of 9)	417.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	6.25604002038055	6.58898267211925	6.60984678308546	6.05589460107319	5.98871246360678	6.02027634149358	-0.785325687276883	0.00671359443121596	0.0758074047269124
Merged-chr19-24967173-4	chr19	24966661	24967661	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5545.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	7.30296603140606	7.44434179686812	7.17563796235834	7.31972191878026	7.79062245515642	7.28227140459461	0.264396958667177	0.320991629937464	0.714680187400013
Merged-chr9-66831533-1	chr9	66831033	66832033	+	759.5	f0_balb.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3173.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	7.85745916448645	8.14685948125001	7.85895008055878	7.96234983373794	8.11877046153696	7.87421172964106	0.0396865233039215	0.862490014665715	0.96807605498315
Merged-chr5-113619340-4	chr5	113618836	113619836	+	847.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	24267.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	3.37688168612888	3.11326811253971	3.63386596033301	3.30532267565047	3.2914710093864	3.39590097474396	-0.213172677587054	0.737493896913096	0.933775317218453
Merged-chr11-87428675-2	chr11	87428175	87429175	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	intron (NM_001199293, intron 1 of 30)	1084.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.1489589151692	3.1573804317634	3.17857119772552	3.18195810660202	3.28169983961109	3.52055723796266	0.693634379939108	0.271524457913428	0.668907126186064
Merged-chr1-125470087-2	chr1	125469587	125470587	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-34360.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.88886618615658	5.79956499420128	6.19299866191143	6.53613474651053	6.74146530867006	6.14611254418352	0.917254266338798	0.0037866279310446	0.0499489119984716
Merged-chr3-54277377-4	chr3	54276881	54277881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 4 of 11)	intron (NM_001253682, intron 4 of 11)	-83726.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	4.79869416589317	4.68486564807663	5.06519971716725	5.02801134229198	5.19106977758014	4.95615331945121	0.485056248785132	0.213717230958883	0.60688633382113
Merged-chr4-135054610-1	chr4	135054110	135055110	+	576.0	f0_balb.idr	Intergenic	Intergenic	-66035.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	2.35203777488906	2.24791412090589	2.54015821666157	2.15257840033066	2.17652118985554	2.16646931115366	-1.5277105412099	0.0904157788985421	1
Merged-chr13-100835061-4	chr13	100834562	100835562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-1635.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.41885408884609	5.42817329681746	5.78421926540462	5.32160694978559	5.65980814393079	5.2902389622785	-0.184030909129561	0.608275569575167	0.884952472844764
Merged-chr9-62838653-4	chr9	62838136	62839136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-151.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	7.04278260045326	7.10025416868811	6.98865418620488	7.03392325927677	6.91329079035864	6.7662432368275	-0.203773006130153	0.407641006579359	0.781792290496971
Merged-chr1-87960232-4	chr1	87959751	87960751	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033291, intron 19 of 27)	intron (NM_001033291, intron 19 of 27)	48300.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	5.5377501059747	5.12092277539227	5.17681333639453	4.85467592760792	4.68620526073939	5.17606621019192	-0.818818621645951	0.0413692641162671	0.25415502546561
Merged-chr1-184732225-4	chr1	184731736	184732736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008250, exon 1 of 4)	5' UTR (NM_008250, exon 1 of 4)	257.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	7.94415736941541	8.38850987094851	8.22993598491016	8.0974943763348	8.29734771807367	8.44317899759996	0.117586951660251	0.623500319662226	0.891427938597819
Merged-chr10-99427292-4	chr10	99426778	99427778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164047.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.45196480960749	3.1685405084053	3.40277410390273	3.40799170417346	3.33562678867196	3.52696197397584	0.294066941553829	0.628961821515785	0.89397074295706
Merged-chr5-148886055-4	chr5	148885550	148886550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153572, intron 9 of 10)	intron (NM_153572, intron 9 of 10)	42597.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	3.09680832039955	3.08567647211536	3.29296618528175	3.60485491702694	3.33174548324306	3.47579316444787	1.29017470592491	0.0399873688525173	0.248879421608218
Merged-chr8-33600338-8	chr8	33599869	33600869	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	748.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	6.24427243006864	6.52932520372566	6.83799101039386	6.84822342093017	6.77656436330006	6.85396020824841	0.435211951347422	0.126416557819297	0.475343167021918
Merged-chr1-84467914-4	chr1	84467423	84468423	+	873.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-183278.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.27864413774309	4.27935670145073	3.8985362297126	4.09905617021303	4.17254773025243	3.9693236580138	-0.242345959992452	0.629205852134948	0.894111604640856
Merged-chr16-23557891-4	chr16	23557392	23558392	+	949.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-37077.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	4.12465756026689	3.79562011288373	4.18201212378656	4.19684201430065	4.10365038995723	4.60908200989812	0.75572480989815	0.141816769225087	0.502696163145654
Merged-chr2-164838447-2	chr2	164837947	164838947	+	994.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038492, intron 12 of 14)	intron (NM_001038492, intron 12 of 14)	4674.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	3.54144384324595	3.24518730058591	3.54705149153266	3.3963239491468	3.18083949759457	3.28876883013971	-0.624555880746123	0.314839022629888	0.709142044149957
Merged-chr15-39944656-4	chr15	39944160	39945160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-666.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	8.16169829611216	8.16752699909456	7.81795513345389	7.78887392963309	8.31071631203893	7.73184933875835	-0.11690478535729	0.662189687384176	0.90668833008286
Merged-chr8-120573365-2	chr8	120572865	120573865	+	704.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 11 of 15)	intron (NM_001145896, intron 11 of 15)	15710.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	3.54616377184829	3.50602080259334	3.79989908176672	3.34033359622563	3.49261158947385	3.4051641257163	-0.726526423154489	0.218247485432084	0.612414823722149
Merged-chr4-148151205-3	chr4	148150701	148151701	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_015797, exon 1 of 6)	5' UTR (NM_015797, exon 1 of 6)	724.0	NM_001163705	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	7.92188945237185	8.13971196807243	7.83546854559634	7.99692818384853	8.06707562111875	7.56664842378489	-0.102459581693554	0.681754579926145	0.914870094611725
Merged-chr2-129388020-1	chr2	129387520	129388520	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-16881.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	7.10725377230053	7.00782432462025	7.12043762768998	7.05836162253814	7.07881847211357	7.17802503509466	0.0390859173667355	0.868508212837506	0.969652123135977
Merged-chr7-29232518-4	chr7	29231956	29232956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033525)	promoter-TSS (NM_001033525)	66.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	7.34900084368899	7.1949959839168	7.59335250570227	7.65270993876697	7.57357773615458	7.74635718027598	0.401543626342732	0.0944038909307594	0.409528124527743
Merged-chr12-81483844-2	chr12	81483344	81484344	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309847, intron 3 of 5)	intron (NM_001309847, intron 3 of 5)	1007.0	NR_132135	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	4.92083114486082	5.22200780361841	4.9877071450727	5.22251716954459	5.47445630456864	4.89877355937574	0.371339094231527	0.34914052960724	0.737192579871072
Merged-chr14-47165306-1	chr14	47164806	47165806	+	625.0	f0_balb.idr	intron (NM_008102, intron 3 of 5)	intron (NM_008102, intron 3 of 5)	24107.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	3.49416715368378	3.444149762422	3.231799627897	3.17631481225408	2.89103089766939	3.18571996959217	-1.35101494190801	0.044638009227273	0.26633910225312
Merged-chr17-78882062-2	chr17	78881561	78882561	+	788.0	f0_balb.idr|f0_c57.idr	intron (NM_011163, intron 1 of 15)	intron (NM_011163, intron 1 of 15)	511.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	5.83094378625897	5.81899525060256	5.82238413398788	5.92456668493513	6.49043696647529	5.5406041184779	0.41823616390462	0.258295123194439	0.655806466621081
Merged-chr7-121073195-6	chr7	121072695	121073695	+	929.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	B4|SINE|B4	1335.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	6.69865609472673	7.15464910569426	6.74617036528214	6.87521961818018	6.97574025456021	6.980619487746	0.0815203848828683	0.763701566192146	0.941793063578371
Merged-chr17-35232853-3	chr17	35232310	35233310	+	749.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2200.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	6.19263843462373	6.10585050901023	6.23569164123115	6.0920191462013	6.62927597300148	6.35480537345604	0.349526095015454	0.246355134733986	0.643456125659878
Merged-chr18-65505996-4	chr18	65505445	65506445	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	MTC-int|LTR|ERVL-MaLR	-74285.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	7.43180143128566	7.76121630060226	7.10273097815275	6.1735438216284	6.24071804383955	5.90449969257312	-2.09330625606047	6.62756216646938e-12	1.11859268305798e-09
Merged-chr11-22974406-2	chr11	22973906	22974906	+	696.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011663, exon 1 of 1)	exon (NM_011663, exon 1 of 1)	-1540.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	5.02420641711592	4.91969433777185	5.18393252341229	4.747966624752	4.91485003447409	5.1852158151042	-0.187505916915713	0.631420563159975	0.895122791781359
Merged-chr10-80261744-4	chr10	80261190	80262190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-678.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	7.20952321224352	7.00044124457284	7.59199258326665	7.35791534815477	7.55289367310898	7.55711792701752	0.310698944680907	0.242623283857212	0.639785480506262
Merged-chr14-75181741-4	chr14	75181238	75182238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	45313.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.93098342585643	6.46008009232939	6.6788189699173	6.90480104537455	7.07597564935812	6.8471094436897	0.380369405790563	0.166731544882883	0.542310936854623
Merged-chr17-88341797-4	chr17	88341302	88342302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98902.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.91425089670299	4.76473887183823	4.84346988089056	5.06307125841645	4.95971317969939	5.08687951480147	0.418616027580575	0.266600150224231	0.664166899200562
Merged-chr6-72548283-2	chr6	72547783	72548783	+	917.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042534)	promoter-TSS (NM_001042534)	-990.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.23419691704966	4.37991206818393	4.50332999614138	3.90202592866921	4.12973041019455	4.49118897937058	-0.496301186195596	0.317330403841212	0.711230390378978
Merged-chr10-20990799-4	chr10	20990326	20991326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 15 of 22)	intron (NM_001358561, intron 15 of 22)	38279.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.95144331892151	3.83139702892856	4.07873756117876	3.69614683224277	3.95274701498322	3.8613908884346	-0.330263553907502	0.526831174733121	0.849687525994762
Merged-chr2-23041596-4	chr2	23041118	23042118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-1377.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	6.09010521724755	6.19682289089863	6.4595577506346	6.18195958031265	6.36257297776424	6.59927711315886	0.22915418217983	0.441597637118704	0.802771480148848
Merged-chr4-136454960-4	chr4	136454450	136455450	+	713.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14811.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	4.77530436005074	4.83241966906743	4.61987745157794	4.0962722902535	4.19445826556967	4.19712110178371	-1.51305579925141	0.000683704464283079	0.013439565571478
Merged-chr17-87313523-4	chr17	87312999	87313999	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	30613.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.43883639662994	6.24343387504472	5.96222160457279	5.73844761175265	5.57433303599977	5.12787092950317	-1.27055638510989	0.000393010259795559	0.00866268299439819
Merged-chr19-34192645-4	chr19	34192152	34193152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360717)	promoter-TSS (NM_001360717)	-282.0	NM_001360717	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	8.37980262584035	8.6568505216596	8.36542058120954	8.70554728638228	8.96963966086423	8.31505109659292	0.306105001067543	0.227520201918272	0.622644333537758
Merged-chr16-76410498-4	chr16	76410019	76411019	+	903.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36692.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.69159999013845	4.69957611996898	4.42513958187961	5.00156949646262	5.10448509188189	4.5889340332008	0.701389569182635	0.103344051988247	0.428463201325997
Merged-chr4-47251311-4	chr4	47250748	47251748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 5 of 39)	intron (NM_009928, intron 5 of 39)	43236.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	3.88378652499844	3.62917119941217	3.84284627716659	3.59624878401904	3.61426886874961	3.60253245107616	-0.61934135151528	0.258973312032286	0.656570729664304
Merged-chr5-125053175-7	chr5	125052977	125053977	+	888.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	50002.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	4.66919959089711	4.70431506463544	4.84636706724017	4.57815887482921	4.46087494554365	4.60841737264083	-0.459636084409865	0.263112298412169	0.661082058032528
Merged-chr2-43739653-4	chr2	43739155	43740155	+	906.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9169.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.35116036256197	5.5868829452224	5.17403822218936	5.30811186949233	5.67829184027056	5.63644221397351	0.306435028164397	0.393054433492992	0.771429661681589
Merged-chr13-47105193-4	chr13	47104676	47105676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	1045.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	7.1253237971133	7.38964373594103	7.23855262937235	7.17215434570175	7.4194624370139	7.39600397254142	0.114723343833695	0.636964902408755	0.897256731014262
Merged-chr15-31511934-2	chr15	31511434	31512434	+	629.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	19103.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	4.29387196681538	4.53287829245417	4.22622745687421	4.57203767797889	4.3564858083949	4.24740569138951	0.0952813384739431	0.836286291270708	0.961960888484752
Merged-chr5-35758493-3	chr5	35757985	35758985	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177678, intron 1 of 19)	CpG	605.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.7636121799534	3.41305613373618	3.37141185167176	3.4869893386113	3.2920259917399	3.60967182830358	-0.256437152087255	0.675754146347505	0.912305923925221
Merged-chr14-64753574-4	chr14	64753081	64754081	+	976.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	101050.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.51422942965761	4.36881963790572	4.45130361116495	4.1237034740285	4.07935452100431	4.34917909847184	-0.715366974068639	0.117625894448127	0.457847940554791
Merged-chr15-76724863-6	chr15	76724424	76725424	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168288, exon 12 of 12)	3' UTR (NM_001168288, exon 12 of 12)	-1079.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	3.73036843226347	3.29360332154271	3.79472258098756	3.32974892169411	3.62731767603503	3.61538811110695	-0.311722115261828	0.61437010930085	0.887435546271868
Merged-chr2-59645462-4	chr2	59644960	59645960	+	935.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1309.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	2.96616511186714	2.97295661790194	3.12038885447686	2.86953326543848	2.74527994157137	3.07962708372597	-0.57785797810812	0.410816891368422	0.783635895772505
Merged-chr2-157069171-2	chr2	157068671	157069671	+	702.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	10094.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	5.49179065255509	5.21151165187067	5.26741353971289	5.04221556873196	5.08769646781908	5.09847096258611	-0.52435786675753	0.143363253835523	0.505400107113741
Merged-chr13-33073571-2	chr13	33073071	33074071	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10532.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.26263240101115	3.30740307843444	3.43997382034878	3.49798304739053	3.52739979076965	3.99328802862461	1.27345984773144	0.0370128562885147	0.23725181003426
Merged-chr2-155517038-2	chr2	155516538	155517538	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	3.25004446299295	3.08487760332372	3.34856260575602	3.09133355477694	3.23474257512232	3.07915120055698	-0.365412867258096	0.573934855636691	0.870428851774368
Merged-chr18-35740515-4	chr18	35740018	35741018	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289592)	promoter-TSS (NM_001289592)	36.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.22131128843318	5.40798960918885	5.35710165475335	5.42398417633279	5.35905662903226	5.42028752885177	0.134645468218014	0.689973258294626	0.917567723252397
Merged-chr9-45049896-4	chr9	45049401	45050401	+	960.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357727, intron 5 of 5)	intron (NM_001357727, intron 5 of 5)	-5280.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	3.95120083194874	3.51813299306054	3.64940845593233	3.41183793974866	3.1274539986131	3.32737594947233	-1.64199300674689	0.00929340138378694	0.0956326171583161
Merged-chr2-26921657-2	chr2	26921157	26922157	+	551.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011512, exon 6 of 6)	3' UTR (NM_011512, exon 6 of 6)	-5127.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	3.84582406334506	3.69496714212897	4.47377647386305	3.92243687524998	3.96990021670482	4.14031811842821	-0.0874022556454545	0.877254241708887	0.971525154312469
Merged-chr13-31227626-1	chr13	31227126	31228126	+	612.0	f0_balb.idr	intron (NR_045957, intron 1 of 2)	L1MA6|LINE|L1	13460.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	4.70566678647073	4.94255844177089	4.37551313277067	4.38872328792525	4.39639313421122	4.35022357560481	-0.8046525257532	0.0746805696357632	0.359711770665851
Merged-chr5-90877066-4	chr5	90876586	90877586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-14159.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	7.1764353775708	7.18475543088282	6.90173706703119	6.50039386113197	6.51543611268717	6.59790035221831	-0.880757869981958	0.000552604177895647	0.0113645794449681
Merged-chr2-119112742-4	chr2	119112238	119113238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011234)	promoter-TSS (NM_011234)	-79.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	6.72738333155976	7.06089894606116	6.93000025222281	6.65958839530532	7.03692356516077	6.48502718513356	-0.233978819604886	0.419586006024695	0.789101346301465
Merged-chr7-90461104-4	chr7	90460602	90461602	+	985.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3894.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	3.92451866048	3.64192108176577	3.86367141799514	3.70043246315864	3.8120344908244	3.78208406658621	-0.150660316731827	0.777806962372651	0.945251190347279
Merged-chr10-21975446-1	chr10	21974946	21975946	+	793.0	f1_balb.idr	intron (NM_001161845, intron 3 of 13)	Lx8|LINE|L1	-3226.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.87735283837537	3.04484543114102	3.00336308258763	2.76303108723034	2.66094115162089	2.95893258186598	-0.928190198058114	0.200391191575642	0.58935919230263
Merged-chr10-39378175-4	chr10	39377667	39378667	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	8368.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.88265244281287	4.66080220409037	4.4382151632022	4.67299446859693	4.5720121685798	4.50706891245996	-0.227812782130415	0.596259653422547	0.879909387076956
Merged-chr4-155492100-2	chr4	155491600	155492600	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	739.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	8.3783310022797	8.44734696368892	8.30850730341858	8.34177607670889	8.13270136938552	8.27174801129354	-0.184673289667635	0.374769066914197	0.758128885281656
Merged-chr7-16262386-2	chr7	16261886	16262886	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2846.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	4.69255302441019	4.71430316251112	4.95897108551545	4.75542251522738	4.50063897310864	4.69738916991534	-0.31861847678096	0.439714129382143	0.801308218958155
Merged-chr16-11288375-4	chr16	11287861	11288861	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25448.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	2.62474855351462	2.66521140398111	2.85178669582687	2.86987651753827	2.79515933013633	3.25747885612907	1.35502778431481	0.0722216559612463	0.353059135727829
Merged-chr1-178350531-2	chr1	178350031	178351031	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-12716.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	3.66069097048296	3.9076287384042	3.64175682079474	3.77856721198298	3.93920647200033	4.15350762590211	0.664620497762095	0.220940851810584	0.61561513090473
Merged-chr11-93985590-2	chr11	93985090	93986090	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10501.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.37931176792698	3.04438862183384	3.23586507521299	3.45670175204729	3.6197620957181	3.63955826681851	1.34062658036871	0.0331260594878284	0.222035859341327
Merged-chr7-89356511-2	chr7	89356011	89357011	+	767.958374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	-17724.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.0405114890769	3.07875063591067	3.39212932088097	3.11412088010349	2.78214212394782	3.19624393699493	-0.600585492939565	0.39608376800901	0.773332291042782
Merged-chr13-73767349-4	chr13	73766851	73767851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	3654.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	5.27077728241992	5.37910654236168	5.44249778055451	5.18648886179963	4.98822571050736	5.26717080240571	-0.446491451099491	0.207648476336294	0.598510119317417
Merged-chr1-179518019-4	chr1	179517522	179518522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027188)	promoter-TSS (NM_027188)	19.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	5.98193011690812	6.47479845433477	5.9843906137932	5.99910546609133	6.12104404590366	5.70419298835196	-0.365056205122845	0.274233019145885	0.671699134465491
Merged-chr7-45301489-2	chr7	45300989	45301989	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18616.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	2.80000618856588	2.91750894552675	3.06434674054751	2.82388638046826	3.13236446550105	3.0205879830864	0.348417973559058	0.62080943267898	0.890349741017488
Merged-chr9-118684110-2	chr9	118683556	118684556	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-27636.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.04881457127461	2.93192597721753	2.97051932502918	2.95080705708488	2.8438135934422	3.66986155683336	0.928297112374088	0.218335264724695	0.612472797118277
Merged-chr17-56506835-2	chr17	56506335	56507335	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5648.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	3.96196840522868	3.60221136634214	3.71740984496618	3.84985068845212	3.35137679076714	3.45127482349329	-0.680202520110279	0.262538319469028	0.660537266762786
Merged-chr1-16672530-1	chr1	16672030	16673030	+	658.0	f1_c57bl6.idr	intron (NM_027415, intron 2 of 2)	intron (NM_027415, intron 2 of 2)	7339.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	3.55381725543072	3.75333570620001	3.99378303379382	3.86972335107712	3.76743461393525	3.71959533582613	0.0564086191084555	0.918063475192633	0.981747877135909
Merged-chr4-62630165-4	chr4	62629642	62630642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	10470.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.99104297227189	5.46347052605897	5.50412695203706	5.55055452824118	5.45869229457093	5.56734607485046	-0.30052128603297	0.392895259339121	0.771377884930667
Merged-chr1-43502017-7	chr1	43501523	43502523	+	992.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	56272.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	7.11924977211421	6.82869174271512	6.58212125537431	7.37123118558176	7.54252563066704	6.95604005700559	0.678929809739407	0.0210124822475693	0.166774679985422
Merged-chr12-84854752-3	chr12	84854258	84855258	+	987.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 2 of 34)	URR1B|DNA|hAT-Charlie	-21044.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	5.00695157160524	5.26256388277897	5.54124227129578	4.86195407852065	4.57998467057378	5.0881166710425	-0.921919381033224	0.025780764786983	0.1904106050413
Merged-chr1-86444208-4	chr1	86443697	86444697	+	859.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17868.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.1545542622369	4.01069648453791	4.22816730583649	4.06046621921882	4.0330927706733	4.16182080438946	-0.135803160207445	0.776607524770769	0.944890351789015
Merged-chr1-97633072-4	chr1	97632573	97633573	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	28603.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.12334102028466	4.43097840877733	4.15389563027515	4.00511505955417	4.08105747440928	3.97619626237676	-0.63416853682936	0.194142362920649	0.581328465709111
Merged-chr19-8799327-2	chr19	8798827	8799827	+	975.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-770.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	5.82142561691447	5.90722247609788	5.89862195084736	5.82312982836609	6.40536722555719	5.91120263479651	0.369887018759993	0.261786038453258	0.659587178226233
Merged-chr17-65730493-4	chr17	65729991	65730991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42261.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.51447267960548	7.38430111583005	7.2217771645	7.18206624193632	7.41802245309691	7.33732036956577	-0.0982965768499857	0.682840067929491	0.91523316791368
Merged-chr14-30944300-7	chr14	30943807	30944807	+	987.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	7.36018022355266	7.69504082798044	7.13622654127774	7.42404879124957	7.55138042243623	7.1277528785605	-0.0576757535504904	0.833416502002285	0.961070491919313
Merged-chr1-191198120-4	chr1	191197615	191198615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14782.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.59533669090722	6.64247354546448	6.18525790099709	6.45567669122474	6.36403216398077	6.42992958658039	-0.142539411220311	0.617074772370708	0.888700457965624
Merged-chr11-109331546-4	chr11	109331042	109332042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15325.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	4.61905827149281	4.45045091845343	4.65185393203032	4.85765429418842	5.09956496310179	4.4553680359235	0.633301187155709	0.151368852849929	0.518722437623528
Merged-chr16-91561764-4	chr16	91561273	91562273	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008338, exon 6 of 7)	exon (NM_008338, exon 6 of 7)	14679.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.71095232429626	6.48614338325067	6.6604448163824	6.799559098081	7.0425982489396	6.91564378537839	0.478241883349019	0.0645043446169908	0.331036297278656
Merged-chr3-37693114-1	chr3	37692614	37693614	+	686.5	f0_balb.idr	Intergenic	C-rich|Low_complexity|Low_complexity	31246.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	2.80897927480013	2.73359616276488	2.96532433714234	2.72597091419523	2.81840701044504	2.97969080471554	0.0358501042547873	0.960142059131199	0.990335445597503
Merged-chr5-66079915-4	chr5	66079405	66080405	+	891.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18274.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.70930620099233	5.61792728945134	5.17552198933806	5.57415071161436	5.66180002064231	5.41251802717857	0.0476517005461187	0.893369277614851	0.975237866709772
Merged-chr13-49300842-3	chr13	49300345	49301345	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	8363.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	4.04718525823413	4.19870387770807	3.81611979017929	3.92413935891047	3.79241560523503	4.26761614751961	-0.107896348021166	0.839766643868782	0.962784121274377
Merged-chr9-50529358-2	chr9	50528858	50529858	+	971.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	-717.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	3.91584470717222	4.09541592255512	3.80307524107044	4.24906123130682	3.88382194736537	3.97980958337516	0.282059989848091	0.58743776474	0.875918692084509
Merged-chr5-100706583-1	chr5	100706083	100707083	+	544.0	f1_balb.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13133.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	3.58368541431229	3.59984223050544	3.52357419611396	3.87163976444929	3.69001642702901	3.85886132727978	0.788087747247882	0.148609845132003	0.514330255126182
Merged-chr5-124550999-2	chr5	124550499	124551499	+	940.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019770)	TTS (NM_019770)	-1865.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	3.08740857328177	3.17769221454862	3.2282396104888	2.87973892291702	3.24238459644158	3.35301116137519	0.0352906716957428	0.958606353602133	0.99015359851262
Merged-chr7-19694030-2	chr7	19693530	19694530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1371.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	6.66608446017282	6.4028243744853	6.74253534802668	6.86766328530068	6.99903032548626	6.73887927398825	0.430350701001165	0.107158743172511	0.43687625348266
Merged-chr19-30032857-2	chr19	30032357	30033357	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	B3|SINE|B2	2344.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	6.215538654419	6.29138517665315	6.28118704535344	6.375217556122	6.45903705272706	6.34115229986042	0.222577822983029	0.408903373873568	0.782403749794615
Merged-chr8-60978705-4	chr8	60978210	60979210	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	4601.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	5.38009624525192	5.34650616290123	5.03953989184126	5.0241070018607	5.23702158531172	5.24268320137366	-0.208459770423351	0.568083728853274	0.868495285168263
Merged-chr1-156034865-2	chr1	156034365	156035365	+	832.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-48.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.20852441056421	6.3271596817084	6.3315729561433	6.42487091198416	6.39935483000298	6.16482422217679	0.089999704707514	0.745892223833792	0.936251303305737
Merged-chr2-132601245-3	chr2	132600709	132601709	+	677.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3013.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	6.36954952906986	6.26889488373557	6.31892198788577	5.66976861533754	5.81077831401934	5.95999569634801	-0.872403458044794	0.00281393096263937	0.040065292186738
Merged-chr4-62681634-4	chr4	62681143	62682143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	7669.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.94368620404026	3.97181521234758	3.58669075101983	3.67211436581393	3.6347779941637	3.35355921182148	-0.953470906359347	0.110145700115224	0.443467484981632
Merged-chr12-76392968-5	chr12	76392481	76393481	+	908.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11195.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	4.60151010687528	4.40023541417532	4.54758396741199	4.27614797717491	3.87545801578842	4.68851439760153	-0.525297639518013	0.306468545907067	0.702691772694074
Merged-chr2-90650175-4	chr2	90649658	90650658	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27057.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	5.40367835061839	4.65545718038762	5.17368630070236	4.98234264332751	5.16707284391588	5.13947865971396	-0.0343365472433609	0.934886547325035	0.985727573165395
Merged-chr6-4977647-4	chr6	4977141	4978141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	MTE2a|LTR|ERVL-MaLR	74321.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.04670416090041	6.40545155256283	5.9932636683592	6.08468173584856	6.02202907616488	5.52869397236547	-0.437830867656406	0.19577571337358	0.583438527663774
Merged-chr14-77878531-1	chr14	77878031	77879031	+	681.5	f1_c57bl6.idr	Intergenic	Intergenic	-3614.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	5.08207150075161	4.95940761630949	5.19558765490526	6.09187885181115	6.35291451142634	6.25602071769815	2.1720926728522	2.64241644848395e-11	3.96877595388904e-09
Merged-chr17-12758949-2	chr17	12758449	12759449	+	741.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	10757.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	3.29225658815283	3.12451601321816	2.87698040832604	3.3817992727466	3.08707693137973	3.43492066370703	0.797098477856512	0.25950415824888	0.657131020381498
Merged-chr8-46837201-4	chr8	46836696	46837696	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	97451.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.97154717021868	4.6566221604406	4.57722744093348	4.58335311421403	4.58550651214082	4.84083994721876	-0.202577194861604	0.632777929153417	0.89568906384386
Merged-chr9-65542930-2	chr9	65542430	65543430	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	37157.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.18804658494905	8.30408018798163	8.13225674014577	8.13461038074042	8.37704985403216	7.99243163221764	-0.0382000336445667	0.865489963873147	0.968641478520565
Merged-chr10-80100706-2	chr10	80100206	80101206	+	852.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	481.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	5.02647935345997	4.79263261878793	5.48654866721844	5.62871140648941	5.5707636889519	5.82294899569122	1.08670464197053	0.00464368522192934	0.058209062962684
Merged-chr10-17522341-4	chr10	17521826	17522826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-200902.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.85343368307672	5.42844203538273	5.7908442990154	5.5614977418092	5.78378798934914	5.99033753807511	0.152671007610652	0.654718262838151	0.903879916994704
Merged-chr2-32260833-4	chr2	32260310	32261310	+	879.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	-705.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	5.79148734215875	5.43084451338699	5.65560856105561	5.80113250615538	6.41422301371134	5.92555509135105	0.803194234455058	0.0213989540060786	0.168853880032033
Merged-chr3-103019527-5	chr3	103019036	103020036	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-1010.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	6.75840868463322	6.79136256503602	6.52397025886383	6.79281583196713	7.18832946976016	6.60189201750956	0.30366097210341	0.29463632248447	0.691490357118739
Merged-chr11-78037933-4	chr11	78037418	78038418	+	847.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040403)	promoter-TSS (NM_001040403)	-23.0	NM_001040403	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	4.07367114792353	3.93198831143105	3.75191289712401	3.96564082438383	3.79994753962998	3.97805711296784	-0.0649393115681521	0.900334060091661	0.976731943826834
Merged-chr11-50134311-4	chr11	50133806	50134806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	Arthur1|DNA|hAT-Tip100	2946.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	6.31207512842324	5.98275642496942	5.85691942073594	5.91057941816728	5.68121826294298	5.49181808195165	-0.636482108618668	0.0559185535247335	0.304457880879889
Merged-chr1-95656824-2	chr1	95656324	95657324	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10770.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	6.55810441937125	6.63769470913269	6.31892330375604	6.35063971613536	6.69653864886705	5.9360873407542	-0.217899490856194	0.504133967731905	0.837485609068766
Merged-chr5-121385112-4	chr5	121384608	121385608	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172275, intron 1 of 11)	intron (NM_172275, intron 1 of 11)	301.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	8.47180978945612	8.45406387409918	7.98519823787919	8.36868518321611	8.57105564726102	8.37531354679819	0.158961361842932	0.505463004325004	0.838131669576059
Merged-chr1-181212050-4	chr1	181211557	181212557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145514)	promoter-TSS (NM_145514)	-79.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	8.55649896812562	8.55300066588414	8.25959016553899	8.50954783766823	8.24598184290893	8.49692530139775	-0.0672034321427557	0.762702908217941	0.941663714620562
Merged-chr7-16285535-4	chr7	16284995	16285995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172297)	promoter-TSS (NM_172297)	-836.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	5.14227048710885	5.13931723370877	5.15397738004588	4.88956070505854	5.01692582979836	4.97729886101135	-0.382487892970566	0.293324182967701	0.690221391260893
Merged-chr19-12502148-4	chr19	12501648	12502648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172442)	promoter-TSS (NM_172442)	-152.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	6.50557790186224	6.38025530823576	6.48316511905828	6.00575500987208	5.61692760263904	5.80316476578428	-1.09664307985912	0.000236823292861706	0.00574172277168906
Merged-chr2-142694630-4	chr2	142694135	142695135	+	881.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	206829.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.3333647888951	3.95463046344858	4.66159547376312	4.5033424768538	4.23095531282273	4.09021482407103	-0.136676878362716	0.792508172363239	0.949977808464961
Merged-chr4-145243794-2	chr4	145243294	145244294	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3076.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.59492493034222	5.90728999778347	6.23415044535944	6.14566067908258	6.32664199070827	6.55546122658924	0.71522746553698	0.0301190776783085	0.209491617107472
Merged-chr10-61370517-4	chr10	61370019	61371019	+	765.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	13004.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	5.11613426335827	5.35291389613621	5.31558483735959	5.23159393447249	5.55659318036591	5.49687891703983	0.343911560204619	0.32947134371843	0.721399184090983
Merged-chr1-36692331-2	chr1	36691831	36692831	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009942, intron 2 of 3)	intron (NM_009942, intron 2 of 3)	844.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	4.98163273415773	5.11163766671045	4.78616162265471	5.01641958418424	5.18069474951287	4.77058628543535	0.0801470196986585	0.840120933800469	0.962819298477451
Merged-chr18-31804497-1	chr18	31803997	31804997	+	912.6666869999999	f0_balb.idr	intron (NM_028866, intron 1 of 21)	CpG	440.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	7.61083523995352	8.22721010397053	7.59937748472829	7.43547435466643	7.51107287744049	7.33929723098141	-0.611136809893272	0.0259939749800661	0.191221525076593
Merged-chr5-102068704-2	chr5	102068204	102069204	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	1217.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.82176100344458	6.72816900325021	6.90104187299609	7.51189644707001	7.76587361643583	7.21382542569164	1.06852837762433	4.63015352151451e-05	0.00148008380414207
Merged-chr14-8135341-1	chr14	8134841	8135841	+	572.0	f0_balb.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	37130.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	3.2341503257395	3.50657886292891	3.39506467694337	3.08457323924415	2.94816032342817	3.24484659852638	-1.26017253089694	0.0561303205723938	0.30517275852494
Merged-chr14-26579960-3	chr14	26579457	26580457	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145969, intron 1 of 17)	CpG	407.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	8.16918820547016	8.31679400038065	7.85842297230311	7.94096683658331	8.10658232559963	8.0161657512686	-0.158102922092528	0.498071232605369	0.833856267944725
Merged-chr2-60178349-4	chr2	60177859	60178859	+	945.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31577.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	4.05333640512126	4.25590336842253	4.36487436592736	4.03919699450249	4.02646787683657	4.02811457800176	-0.553112613730249	0.251700940383495	0.649173703610206
Merged-chr11-101639903-2	chr11	101639403	101640403	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	11954.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	2.99999900474105	2.80040752745689	2.82432690994595	3.04702567625308	3.03027417303966	3.08169412543481	0.809695727007064	0.240886589108432	0.637887190711426
Merged-chr18-31759864-4	chr18	31759290	31760290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-34.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	7.33867356655395	7.63823161860616	7.49710988746085	7.4221588421068	7.42856812607997	7.40962377478695	-0.114182508349747	0.622900829484718	0.891251075175817
Merged-chr5-137503007-2	chr5	137502505	137503505	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-576.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	5.31509497818793	5.20371940159629	5.67735107220751	5.21858313435836	5.26642447610305	5.23539673116734	-0.317619271864551	0.379940724562635	0.762204638031028
Merged-chr3-107099336-3	chr3	107098859	107099859	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2208.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.57721737887575	6.574854162259	6.33175139795074	7.59175760109901	7.43279065041077	6.63216037230688	1.20547225435738	0.000214042039793916	0.00528800773372095
Merged-chr8-4524630-4	chr8	4524108	4525108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026058, exon 11 of 11)	3' UTR (NM_026058, exon 11 of 11)	31203.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	4.09522965667206	4.04087556981947	4.52738352632899	4.11762590558098	4.04765937335172	4.35850663643443	-0.150344655621407	0.763715038296481	0.941793063578371
Merged-chr1-37998548-3	chr1	37998049	37999049	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	CpG	539.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.81223721676052	6.99756970084083	7.14950895467964	7.04674052520554	7.19070762075305	7.43490771880931	0.364187948997766	0.160866775159279	0.533601858778287
Merged-chr9-61962653-2	chr9	61962153	61963153	+	649.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 6 of 7)	intron (NM_028748, intron 6 of 7)	-15854.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	2.58106619554533	2.50461448312473	2.69100978359565	2.40346424832422	2.23187142143261	2.64400154872475	-0.979874364384473	0.251668208646237	1
Merged-chr8-75071854-4	chr8	75071464	75072464	+	967.09375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21654.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.79054319564221	3.64526375632579	4.09541603733601	3.949582857507	3.56681828216066	3.73452205332699	-0.293105916095665	0.603005270891131	0.882484631305431
Merged-chr5-136035079-4	chr5	136034566	136035566	+	898.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-3430.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	4.12778075030366	3.7718393542038	3.97522180352857	4.03239565457658	3.66593086974937	3.67861457490473	-0.503651301629696	0.358507930628458	0.74482243657584
Merged-chr5-77357874-4	chr5	77357387	77358387	+	862.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	47403.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	3.46755194927483	3.51202740419077	2.82648462557249	3.01062304509611	2.8491160211897	3.16709438526016	-1.25132583386229	0.109010136147652	0.44106937375527
Merged-chr1-52141647-4	chr1	52141137	52142137	+	797.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205313, intron 11 of 24)	RLTR28|LTR|ERVL	22015.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.89846066304867	2.54480776672543	2.87385287944534	2.97555773903118	2.86763536404983	3.06451570947388	0.92792340805212	0.2178721038853	0.611901565759233
Merged-chr9-105053962-4	chr9	105053451	105054451	+	827.445801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053159, intron 1 of 9)	intron (NM_053159, intron 1 of 9)	683.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	7.47671498674712	7.58149417888707	7.68418590380372	7.69297425833355	7.85883572879518	7.18450978452468	0.0582485081343424	0.828318565646028	0.959674411441762
Merged-chr19-29478820-4	chr19	29478309	29479309	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43178.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.27069488741344	5.31697989563166	5.18431387777995	5.63516463582123	5.44420192554441	5.21484373329085	0.36729075427483	0.296012963993282	0.692779918635739
Merged-chr15-3982909-4	chr15	3982411	3983411	+	959.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145930, exon 6 of 6)	3' UTR (NM_145930, exon 6 of 6)	-3338.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	4.54188906174605	4.3410797326584	4.419517448765	4.24064053287974	4.23512305517042	4.56728419520887	-0.236802484650612	0.601502412039184	0.881943853341137
Merged-chr19-5494794-2	chr19	5494294	5495294	+	545.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007687)	TTS (NM_007687)	4339.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	2.47912959255403	2.44271399012305	2.54680280541102	2.54531803788668	2.3674077441094	2.97341107233311	0.895349629949269	0.282979543393046	0.680938195050423
Merged-chr1-37541187-4	chr1	37540735	37541735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173870)	promoter-TSS (NM_173870)	-219.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	5.42452049513539	5.04229226977839	5.21452482679314	5.58688674607368	5.18137566732798	5.21205408047947	0.205149707297366	0.585388023535816	0.874990419313936
Merged-chr9-109087761-2	chr9	109087261	109088261	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025689, intron 1 of 3)	intron (NM_025689, intron 1 of 3)	5265.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	2.6877704062152	2.71242161205641	3.0192546597441	2.81081448735991	2.66086448835604	2.73800598403307	-0.374277776398342	0.614416472614107	0.887435546271868
Merged-chr16-94522262-2	chr16	94521762	94522762	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	RSINE1|SINE|B4	4367.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.12078902125289	4.39722168728226	4.59773368788792	4.40832207513842	4.27028757993709	4.38149445463359	-0.068022360310547	0.883554327999268	0.97338816689636
Merged-chr18-5986027-4	chr18	5985522	5986522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150076.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.44003123994857	4.61192370056533	4.6420388295421	4.357146259444	4.05224389226154	4.14548090635886	-0.98901648954337	0.0312051570921549	0.213934144461072
Merged-chr6-119175269-4	chr6	119174897	119175897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033379, exon 1 of 9)	exon (NM_001033379, exon 1 of 9)	144.0	NM_001033379	319618.0	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	decapping mRNA 1B	protein-coding	5.53981648804093	5.81422742894626	5.81938381653428	5.8462166861414	5.7823434206484	5.3672201259808	-0.0619279334605823	0.85578851178738	0.966258544020232
Merged-chr10-80666228-1	chr10	80665728	80666728	+	804.0	f0_balb.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-9157.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	3.55060160874956	3.60051155076977	3.91715464951517	3.87133875543825	3.54610712101128	3.89175910288414	0.270185125806259	0.633570333567501	0.896059441151508
Merged-chr1-65189128-3	chr1	65188609	65189609	+	770.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 1 of 41)	T-rich|Low_complexity|Low_complexity	2424.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	4.72688790390864	4.76906367802543	4.90353817408755	4.92731200905655	4.72210966890055	5.06970926392071	0.240098772746339	0.544843743708101	0.857895653540487
Merged-chr5-142908278-4	chr5	142907846	142908846	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1592.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.03009607338863	5.90456453750944	6.40737713422185	6.53279700469661	6.59893012326574	7.20019090158209	1.10657063048355	0.000830306969324874	0.0155884887869098
Merged-chr17-29486035-3	chr17	29485509	29486509	+	805.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5036.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.64795856253442	3.53263744798543	3.39567206396097	3.46996767854126	3.38695331785663	3.68140861222094	-0.0859165568102898	0.883684654996994	0.973438264840472
Merged-chr3-90491014-4	chr3	90490510	90491510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	3.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	7.52004989273772	7.63875893449079	6.96037465750803	7.52555381516826	7.63354328042675	7.10537090959876	0.0486866007338315	0.869326807495798	0.969788171765313
Merged-chr4-48419269-4	chr4	48418815	48419815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281978, intron 15 of 18)	intron (NM_001281978, intron 15 of 18)	54148.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	4.51377098160118	5.01160579819513	5.11042767478455	4.14561218525978	4.21469234121573	4.67079348240966	-1.31746172848755	0.00626971349922788	0.0720765848084765
Merged-chr11-120628069-4	chr11	120627504	120628504	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010756)	TTS (NM_010756)	-3002.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	4.70804577890852	4.76043086458984	4.72811592010878	4.60997838969165	4.81257493972376	4.86848638163053	0.0783299836206093	0.844406663343352	0.96373428957366
Merged-chr1-154036311-2	chr1	154035811	154036811	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	136382.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.7686608334524	4.95219782553924	5.22600726257621	4.70169824055472	4.48603260241274	5.04414192771882	-0.529085970316893	0.220281569995276	0.614681541170627
Merged-chr5-114628725-1	chr5	114628225	114629225	+	644.0	f1_c57bl6.idr	intron (NM_022017, intron 11 of 15)	intron (NM_022017, intron 11 of 15)	29696.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.30181343592104	3.48448218269024	3.42102723056686	4.10904691445021	3.96388967832012	4.07356268208836	2.22498700605557	0.000117272199670074	0.00324508985372381
Merged-chr9-51963427-4	chr9	51962915	51963915	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301728, exon 1 of 4)	exon (NM_001301728, exon 1 of 4)	187.0	NM_001301728	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	4.55849413349193	4.58779059191943	4.39803837315751	4.43400768045188	3.88456436758435	4.28585792884552	-0.80288999988125	0.0993066807962929	0.420129667261437
Merged-chr4-141671693-2	chr4	141671168	141672168	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7553.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.03842975322393	6.47117894633353	6.16575996716086	5.97744131078779	5.98444353206615	5.74305191925943	-0.562864146871672	0.0713864458774968	0.350548745518577
Merged-chr10-95523074-2	chr10	95522574	95523574	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	B3|SINE|B2	7912.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	4.15654286301819	4.47564181936905	4.28929577465633	4.47299827275381	4.68476044081335	4.73039937745055	0.789839352695359	0.0774018405972535	0.367016371154779
Merged-chr11-115061305-2	chr11	115060805	115061805	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	734.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	4.49634432852861	4.29801922378736	4.63747699848972	5.03479478588601	4.9992318391744	4.93219522849802	1.20771196000345	0.00305391668506421	0.0426502684677447
Merged-chr16-95705106-19	chr16	95704711	95705711	+	942.236816	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	2804.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.0337138228327	3.97914976438449	4.27945936458317	3.95807765761395	3.88631159512495	4.21926683622313	-0.223451991998872	0.656876482155681	0.904720876497753
Merged-chr18-4836991-4	chr18	4836484	4837484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24498.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.47656935339168	3.44914217503177	3.54705094754078	2.98062577445019	2.77277471086921	3.18249565777378	-2.39702504602413	0.00103689901378642	0.018518629134823
Merged-chr15-98985867-4	chr15	98985374	98986374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-91.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	8.6769898622788	8.55556380793056	8.2827038593499	8.53684195692074	8.7146816150011	8.44122289544783	0.0726363729248634	0.747114289476828	0.936552918354416
Merged-chr3-104793451-3	chr3	104792953	104793953	+	890.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007484, intron 4 of 4)	URR1A|DNA|hAT-Charlie	4419.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	4.42991282122559	4.21818220067244	4.75832139598431	4.3352541161904	3.98957917865954	4.60854296567034	-0.394639488787638	0.434898666586762	0.798690038168784
Merged-chr2-170153025-3	chr2	170152529	170153529	+	704.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10354.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.8278808799348	6.64540763684197	6.90906988752922	6.96154963482896	7.24043508082483	6.85118671475144	0.376555127460432	0.155081892213552	0.524555044199399
Merged-chr10-57721224-4	chr10	57720753	57721753	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-63670.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.7290755755689	5.89094858295626	5.7696327624809	5.64554811332459	5.80051133167195	5.92783434154587	-0.0163362542078571	0.958044041656459	0.990000537228272
Merged-chr13-43094768-3	chr13	43094267	43095267	+	963.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302636, exon 7 of 13)	exon (NM_001302636, exon 7 of 13)	-28072.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.10600923798705	2.99889401341678	3.0629881226211	3.01569023231388	3.09930159217556	2.88985200974342	-0.209867210437405	0.756031042196368	0.939527320894303
Merged-chr11-77441201-3	chr11	77440705	77441705	+	752.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22708.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	5.08945207451882	4.67623323641675	4.85682878999863	4.75104512613154	4.85272861809902	5.15681541188512	0.0806433711043033	0.844878084743094	0.963760118842549
Merged-chr14-77904371-4	chr14	77903882	77904882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178825, exon 1 of 7)	5' UTR (NM_178825, exon 1 of 7)	143.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	7.69151598157099	8.04291441277335	7.45800298507471	8.02737369928927	8.59563781882919	7.9765685349981	0.677646931833373	0.0187532383067053	0.154948240396847
Merged-chr10-79824036-2	chr10	79823536	79824536	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3015.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	4.3056838929845	4.62927906736924	4.6318757329649	4.51942207359851	4.77772604572764	4.69776670368329	0.348767544534877	0.419672706320966	0.789150628972688
Merged-chr10-75146209-4	chr10	75145713	75146713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65860.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.31349170816921	4.35254592843289	4.41063674246345	4.5126414983028	4.63179731132734	4.43451134886569	0.455917101499563	0.290960852063843	0.688730956375975
Merged-chr12-27312330-2	chr12	27311814	27312814	+	800.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	30404.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	4.08247227079564	4.37373044456704	3.98785314538202	3.13659906095506	3.09420203811255	3.46791814068059	-3.95752231293796	1.65480308370029e-07	1.11132247771214e-05
Merged-chr16-35739752-4	chr16	35739252	35740252	+	960.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	29604.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.89186874328233	5.95301126944247	5.61553193834474	6.53894567462548	6.68291589616971	6.50507467156153	1.23732243494994	2.58768402724301e-05	0.000910164970626176
Merged-chr14-65837382-4	chr14	65836923	65837923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145944, exon 1 of 9)	5' UTR (NM_145944, exon 1 of 9)	121.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	6.58852070361654	6.6429298548024	6.63112488093909	6.77538827610761	6.78360852278906	6.49733142620192	0.127502158984866	0.625585024169457	0.892513881101067
Merged-chr17-46347358-4	chr17	46346883	46347883	+	892.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19360.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	3.94855394442423	3.9806677020863	4.30080113088901	4.28532694849555	4.30949271851007	4.45000605021607	0.752206947717814	0.11455232043964	0.452032914562748
Merged-chr12-32431279-3	chr12	32430794	32431794	+	842.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	52505.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	2.05655482228304	2.315332074161	2.1534175740925	2.42613229310145	2.38790977556268	2.80180491378358	2.49425096852455	0.0130603690380469	1
Merged-chr17-64667135-2	chr17	64666635	64667635	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	65486.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	2.83340140279516	3.35812714167215	3.19061450065077	3.12358088508075	2.85485115794144	3.31742723433454	-0.159112212884804	0.827930991099852	0.959584381371691
Merged-chr6-115331183-4	chr6	115330668	115331668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-29783.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.19255112694579	5.1192317667535	4.89660585800149	4.73158217913517	4.84758141651921	4.99860433339909	-0.490120664324967	0.202909290691965	0.592772302593993
Merged-chr13-24444905-4	chr13	24444405	24445405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	29783.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	6.23537314803126	6.21222842864805	6.29383740880208	6.33960197912787	6.68774282299398	6.37342892265772	0.397428833406779	0.159193962223374	0.531158781765317
Merged-chr6-124916507-2	chr6	124916007	124917007	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-356.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	5.23591374127117	4.74313058478257	4.46748395877136	4.88949031914976	4.84764361040107	4.28252048862454	-0.348547881880284	0.486453456450089	0.827855940662378
Merged-chr9-45953574-4	chr9	45953058	45954058	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152206)	promoter-TSS (NR_152206)	-428.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	7.31302401979982	7.56285668896273	7.23802230313048	7.21661439917916	7.48464894164139	6.91743170201695	-0.213523105077283	0.432335475062639	0.797308677253752
Merged-chr5-32690815-2	chr5	32690315	32691315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55527.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.35461972193102	3.50617085090343	3.60498330624342	4.10586050567996	4.16042310347364	4.08535401511654	2.12876346343053	0.000120901315242403	0.0033278057025107
Merged-chr10-51534822-4	chr10	51534321	51535321	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	43923.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.50788372922201	4.57238384448414	4.68137111161569	4.45793865371966	4.0953182533485	4.63336438109125	-0.462455139633524	0.314813693695621	0.709104188436296
Merged-chr17-35162303-2	chr17	35161803	35162803	+	774.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020027, exon 3 of 31)	exon (NM_020027, exon 3 of 31)	2574.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	2.87414783002398	3.04082070084157	3.10873919545537	3.20298822699089	2.78565127652362	3.06477909872984	0.0795726956177893	0.910282163605494	0.97984424692051
Merged-chr12-12262232-4	chr12	12261764	12262764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	CpG	125.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.73615906131594	6.53369766309872	6.77035380498113	6.84813995590359	6.80606241170638	6.68774345444545	0.167425176191288	0.51519697944451	0.843376573195867
Merged-chr1-40405459-2	chr1	40404959	40405959	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24111.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	3.9254791800323	3.87033430815977	3.98158733052739	3.79857155644651	3.77860264667349	3.58013325239576	-0.623400837610324	0.240363106272129	0.637435893658386
Merged-chr7-45062012-2	chr7	45061512	45062512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	-360.0	NM_022999	65116.0	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	5.15821860346651	5.4568482113592	5.90297752105533	5.62383575202847	5.6590779955606	5.98483527934415	0.42362413670713	0.259192442311772	0.656825376873982
Merged-chr5-136988278-2	chr5	136987778	136988778	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-319.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	6.02496325365906	5.84415706741455	5.83988115222103	5.5463833108913	5.60950711563084	5.85262161775305	-0.436897294915294	0.164952116154787	0.539617077326343
Merged-chr10-60367244-4	chr10	60366742	60367742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 4 of 6)	(CCCCCT)n|Simple_repeat|Simple_repeat	20391.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	5.32052594574406	5.02525857620089	5.27701003539338	5.35992032806173	5.14547188821015	5.5142962905563	0.255707723115641	0.483896180095528	0.826584678003739
Merged-chr17-25116056-4	chr17	25115526	25116526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163661)	promoter-TSS (NM_001163661)	-59.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	7.30337541782434	7.21711385191168	7.13153542932099	6.9712150512396	7.0326517424495	6.67558499098485	-0.467979358043646	0.0644982892842624	0.331036297278656
Merged-chr5-135537951-4	chr5	135537466	135538466	+	869.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	7156.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.08204277085288	3.77380972158184	4.07795148796429	3.72724268096588	3.50329121569937	3.47519295198434	-1.35504182299478	0.0168141812603069	0.143883276087125
Merged-chr2-165285802-4	chr2	165285316	165286316	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1971.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	6.13786317853298	6.16250870324005	5.35692441689244	5.61904930203097	5.72911129052715	5.42287743343854	-0.620323658719585	0.100789740998668	0.423393887504426
Merged-chr9-21290640-2	chr9	21290140	21291140	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009878, intron 1 of 1)	intron (NM_009878, intron 1 of 1)	569.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	5.64980288402395	5.638357160751	5.98231687248102	5.99168948880579	6.02822754443217	6.06475889641997	0.485187096972516	0.114580073982863	0.452032914562748
Merged-chr4-105245847-4	chr4	105245387	105246387	+	795.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88540.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.16644909966322	4.45947318767455	3.66476106518713	4.2862638399238	4.2112092469845	3.97525920744401	0.0585957084070485	0.919050601689694	0.981910789307757
Merged-chr2-45113702-2	chr2	45113199	45114199	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-420.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.6728526856215	6.32707076113086	6.8789678249589	6.79910340759291	7.02886094895114	6.59622423703333	0.300214585670913	0.309906110703736	0.705462734304293
Merged-chr16-91395583-2	chr16	91395083	91396083	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 7 of 7)	MER21C|LTR|ERVL	-10652.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	4.62941192649087	4.25126208830871	4.63966323797456	4.68997992457532	4.40332946500609	5.01826395558051	0.483987369220342	0.299205327568351	0.695964214930834
Merged-chr1-144007540-4	chr1	144007058	144008058	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3409.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	4.97243410565872	4.9545808573229	4.25920821397314	4.43220145049801	4.64492941224117	4.65557550726047	-0.463100141528816	0.327098294735951	0.719317370353337
Merged-chr16-33933979-2	chr16	33933479	33934479	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33059.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	6.58485319635165	6.83544097750739	6.94764648467982	6.76443541237299	7.04795833850237	6.7906093494729	0.138031522774705	0.607582654591678	0.884614829803401
Merged-chr7-139366744-3	chr7	139366250	139367250	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22359.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.07560961734679	2.87608595061717	3.05483804747785	2.99336902092575	2.60554752104213	3.06962117754137	-0.484033968117746	0.519435536828248	0.84582839931823
Merged-chr4-132816605-4	chr4	132816106	132817106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20242.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.54346361644257	6.28384145960814	6.52276231262372	6.44578186241108	6.57594908552015	6.68024302471056	0.187047187745079	0.492254882531093	0.831024676709284
Merged-chr15-81853767-1	chr15	81853267	81854267	+	668.0	f1_c57bl6.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	4559.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	2.62055739397131	2.47048963545675	3.14211991290088	2.73033146526099	2.87761183447225	2.87993230295517	0.263963232272192	0.748124958166796	0.936880860325556
Merged-chr8-27017726-2	chr8	27017226	27018226	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6073.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	5.02593444152162	5.42901741145991	5.25075997671003	4.83961533547002	4.9597419893158	4.86317003770348	-0.750471176087694	0.0498478306616459	0.28409166395166
Merged-chr2-165900803-2	chr2	165900267	165901267	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15929.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.81685808675478	5.81763039324786	6.07891180380196	6.6669424448484	6.40086535982635	6.14005347693357	0.888300981662982	0.00384028419001306	0.0503994755613996
Merged-chr10-24636142-4	chr10	24635644	24636644	+	964.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40702.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	7.43163418193593	7.55393432911708	7.32401495052335	7.28429763174156	7.45558393889578	6.99864038966395	-0.255180798380501	0.313640242627727	0.708132564679568
Merged-chr2-150922871-2	chr2	150922371	150923371	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	B1_Mur4|SINE|Alu	13277.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	6.13180070561066	6.33500397067784	6.07091054595531	6.00753411909676	6.48734191066771	5.77729162139595	-0.0741912325149848	0.825823807881066	0.958953374592769
Merged-chr15-67414291-4	chr15	67413788	67414788	+	836.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187519.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.55689729371457	4.46488227567482	4.67719453935719	4.42940815917949	4.35473070602559	4.77851013020835	-0.104591995659428	0.81223074204271	0.955522346725432
Merged-chr11-97986475-4	chr11	97985962	97986962	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-16.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	4.71455601613093	4.631428009539	4.6373346414594	4.81655682364744	4.1859709800479	4.25687613047345	-0.5053822575587	0.28551816512416	0.683056711527878
Merged-chr15-75910468-3	chr15	75910013	75911013	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285429)	promoter-TSS (NM_001285429)	778.0	NM_178646	105734.0	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	3.9688166237021	3.78526656066423	3.81688708079781	3.66443446043991	3.77689003895605	3.73078532519512	-0.435664083793258	0.409720103066078	0.783037110673669
Merged-chr12-64967378-1	chr12	64966878	64967878	+	549.0	f0_balb.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1636.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	4.60890783120344	4.37427610187478	4.57692373452961	4.34123169785403	4.30330167243627	4.48131327045152	-0.385672218813948	0.379111087462571	0.761621772253655
Merged-chr14-43922327-4	chr14	43921805	43922805	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053112)	TTS (NM_053112)	1063.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	5.76007426291023	5.32708897748252	5.39764887905287	6.03444341797606	5.67386812187183	5.92293033357602	0.667418590021567	0.0539435812323575	0.297929836975151
Merged-chr2-164881170-1	chr2	164880670	164881670	+	791.5	f1_c57bl6.idr	intron (NM_146129, intron 1 of 16)	intron (NM_146129, intron 1 of 16)	1802.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	3.03175839555977	3.10166933591708	3.146785225621	3.21836179491813	2.9580675186642	3.32937542301331	0.338792849818314	0.608916428826333	0.885053989692691
Merged-chr3-138527168-4	chr3	138526679	138527679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313980)	promoter-TSS (NM_001313980)	-89.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	8.29569176283374	8.66674508621876	7.95709418299971	8.50021743754824	8.64757011196169	8.08325406373771	0.126478390331354	0.651860857707097	0.902896807825606
Merged-chr18-89160033-4	chr18	89159527	89160527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37400.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	4.07391990522212	3.831366948526	3.97887585862692	4.2882211300264	4.1062011385697	4.2371029348436	0.706172106725464	0.148314891963284	0.513822363663956
Merged-chr10-86868392-2	chr10	86867892	86868892	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 51 of 68)	intron (NM_138673, intron 51 of 68)	89387.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	2.59272397957541	2.74987009946149	2.79788326636992	2.61220001674694	2.37259717477074	3.09539810673076	0.0791827421737018	0.925888760174244	0.983305773102619
Merged-chr13-90923502-1	chr13	90923002	90924002	+	1000.0	f1_c57bl6.idr	intron (NM_024175, intron 1 of 3)	CpG	380.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	7.65952789967548	8.15244303041681	7.9587143148274	7.86264659737521	8.18090180862071	7.70709415944738	-0.00156942715020836	0.995206303606621	0.998961028701257
Merged-chr18-54900108-4	chr18	54899620	54900620	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 3 of 8)	intron (NM_001360787, intron 3 of 8)	90060.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.58650938402903	6.19322216111367	6.23364898240596	6.49349729187333	6.7282882744319	6.50847826156647	0.373415542861618	0.196338928642104	0.584130777118571
Merged-chr9-77689385-1	chr9	77688885	77689885	+	675.0	f0_balb.idr	Intergenic	Intergenic	52653.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	4.59321120260908	4.3875697742018	4.04473135273647	4.00174155425966	4.03899169720994	4.01159194332357	-0.980126649617465	0.0489845067884972	0.281213111691547
Merged-chr16-29453450-4	chr16	29452970	29453970	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74738.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	5.69792210497092	5.62893626054275	5.64554813965643	5.57161373624585	5.67621340816169	5.350188721577	-0.197291191634564	0.546163177709828	0.85853015997781
Merged-chr5-142936486-4	chr5	142935991	142936991	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23864.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	4.07618647503095	4.17244544320231	4.29430823260006	4.21905608041507	4.14364694066244	4.31820498184509	0.124321623782482	0.789513231575964	0.949244735006745
Merged-chr8-106753675-3	chr8	106753175	106754175	+	897.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173037, intron 14 of 17)	intron (NM_173037, intron 14 of 17)	70607.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	3.25805315803147	2.95131551377423	3.34541915827345	3.11291779813405	2.77780688943112	2.82816579181751	-1.27319430887233	0.0827981189172308	0.380635329001477
Merged-chr15-25858263-4	chr15	25857780	25858780	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	14982.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.2281305874008	3.74222472234612	3.57709535662186	3.79005067221868	3.56846120012589	3.65075461377974	-0.6947569054385	0.238702887178422	0.635449458992732
Merged-chr7-44815955-4	chr7	44815500	44816500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030693)	promoter-TSS (NM_030693)	-88.0	NM_053074	18226.0	Mm.2565	NM_053074	ENSMUSG00000109511	Nup62	D7Ertd649e|Nupc1|p62	nucleoporin 62	protein-coding	6.28755976659902	6.426536836677	6.40919876277297	6.64363577339834	6.47739007517842	6.45027225632478	0.248661654136183	0.353230018825284	0.740562010982123
Merged-chr13-59875861-4	chr13	59875357	59876357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52710.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	7.29030630725729	7.35173834481636	7.38744234722455	7.62366746534325	7.76739422353041	7.54752197941241	0.458104300521868	0.0426182208893733	0.258891842517983
Merged-chr8-105566083-4	chr8	105565601	105566601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-37.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	8.31714939248715	8.5047774122057	8.0862384583466	8.06914232857801	8.51359402702559	7.95135010931415	-0.151565081882478	0.559613007135727	0.865001482687873
Merged-chr2-166682671-4	chr2	166682178	166683178	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	31154.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.36694374562251	6.03040240213321	6.04020106752998	6.34783710680096	6.20548164139802	5.70868586404317	-0.0559097554106055	0.866123104179563	0.968757596344316
Merged-chr2-181483692-4	chr2	181483125	181484125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9581.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	6.3674056982478	6.32837757717828	5.94710959339655	6.07340153064416	5.96117133684748	6.03278393378016	-0.372161786513848	0.213857558935763	0.60695339941084
Merged-chr3-90051009-2	chr3	90050509	90051509	+	696.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287087)	promoter-TSS (NM_001287087)	-627.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	4.68830030797035	4.99185644831356	5.08889428508082	5.0355394574659	5.23089687536021	5.2789123415992	0.546101801555018	0.155092017048048	0.524567966933621
Merged-chr10-62920120-2	chr10	62919620	62920620	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	-513.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	6.45054962685147	6.43976748170669	6.46623335757558	6.39737658681682	6.60933564659537	6.11709627489709	-0.0741432466275878	0.796484109170046	0.951430675491237
Merged-chr9-96536450-4	chr9	96535923	96536923	+	861.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-57748.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	6.08107144253475	6.38668776258878	6.29299637488436	6.05767174408717	6.28654004106688	6.21267047040408	-0.113127150756065	0.696727985829962	0.919584129006226
Merged-chr11-114983806-2	chr11	114983324	114984324	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6062.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	4.35041952383405	4.5105520239769	4.85228089641424	3.78549591108644	3.53374001604284	4.06142920685485	-2.31251864454905	2.81693284257836e-05	0.000977037715570072
Merged-chr1-37475643-4	chr1	37475274	37476274	+	847.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	12831.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	5.62096181600982	5.50343838425436	5.67538842162952	5.86679306423458	5.71636751995745	5.8629785198017	0.394637084298317	0.20653919166947	0.597141275948059
Merged-chr1-193130243-4	chr1	193129750	193130750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	1.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	5.08015727475033	5.46162729650408	5.31275997283113	5.53603534703214	5.36705247937631	5.28037276308171	0.208099247490336	0.560284327630987	0.865206445804495
Merged-chr15-78591960-4	chr15	78591461	78592461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-5086.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.33321965236601	5.05879363165839	5.30688165969007	5.77674879364572	5.63680752038659	5.57971726538318	0.838159617858337	0.0134902554717133	0.123650272889438
Merged-chr1-175693581-4	chr1	175693088	175694088	+	950.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-956.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	4.60426136278484	4.61124391770481	4.65012811116243	4.41044446049885	4.53866330516307	4.55551110419782	-0.288033854091206	0.489264756737827	0.829548356533255
Merged-chr4-101266007-2	chr4	101265507	101266507	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-725.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	3.96133857953435	3.53517456252731	3.56770917966045	3.97293335834423	3.68911653394057	3.7514966725405	0.325718374667483	0.569844536703205	0.868897023832802
Merged-chr9-64810034-2	chr9	64809534	64810534	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162917)	promoter-TSS (NM_001162917)	-977.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.51042590871498	4.00766349165883	4.19301244414074	4.3673234460442	4.22320864133204	4.21470080112058	0.0328730568338777	0.946261353625225	0.98796006280508
Merged-chr13-98816395-2	chr13	98815895	98816895	+	713.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172591)	promoter-TSS (NM_172591)	-946.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	7.04233263008062	7.34577720360962	7.06688878562737	6.9752675626058	7.26710984192731	7.00361310492052	-0.101918115708734	0.692896525919458	0.91880752705484
Merged-chr10-60831563-4	chr10	60831061	60832061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	20.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	5.39016937641177	4.93143715447302	5.11923128062192	4.95506355463302	4.53281112986249	5.01412584775775	-0.695078506939824	0.0959626837706324	0.412951471230873
Merged-chr16-23608518-2	chr16	23608018	23609018	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1401.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	4.44232813555623	4.12349226715724	4.35055273700173	4.13545185048084	4.00672703021748	4.28827134622034	-0.471412093363482	0.32418116128604	0.7173095907889
Merged-chr17-26584607-4	chr17	26584096	26585096	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	23084.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	4.83655298260845	4.84965629081097	4.82975089387076	4.566854157828	4.61412483508535	4.34632947081895	-0.741012035326	0.0747429047232059	0.359887021364997
Merged-chr2-173783921-4	chr2	173783391	173784391	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019806, exon 6 of 6)	3' UTR (NM_019806, exon 6 of 6)	46320.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.92876494515539	6.4456578092395	6.32494072332798	6.04041950503018	5.85899156927291	5.63935567377591	-0.666370105440573	0.0425870412658773	0.258787886485878
Merged-chr2-38926732-4	chr2	38926218	38927218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-257.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	6.37456428650707	5.98230548688529	6.04704957872431	6.1266812705127	6.09640171996874	5.86458946711495	-0.186748309434084	0.544766699335183	0.857894224757806
Merged-chr13-23581551-4	chr13	23581068	23582068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-34.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	6.7585099276623	6.56424758065759	6.36337508312621	6.41597602411072	6.77614337511379	6.82888887079653	0.166623085143936	0.562033352925452	0.86560636450104
Merged-chr12-71003872-4	chr12	71003326	71004326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	B2_Mm1t|SINE|B2	11997.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	5.69155189197794	5.83560930203442	5.6880221013434	5.81148331796333	5.82111190399959	5.87754097880177	0.162955639095702	0.592370092000481	0.878003422897225
Merged-chr12-73968342-3	chr12	73967839	73968839	+	813.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178392, exon 3 of 10)	exon (NM_178392, exon 3 of 10)	3809.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	5.46270004706766	5.78814564491663	5.85660866341685	5.64392517394994	5.33418868304875	5.96194821445033	-0.0924855577622295	0.798040728789154	0.951930937621884
Merged-chr4-120053273-4	chr4	120052854	120053854	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107852.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	7.26933792551554	7.09290462013585	6.81169334401496	6.39320665479163	6.53712590164493	6.46150368610353	-0.95559832751875	0.00040156684250252	0.00881392082061454
Merged-chr8-25275247-4	chr8	25274727	25275727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31043.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	3.01536010922566	2.68739256067254	2.84108990732893	3.04279931382977	2.81928141222393	3.03600416116008	0.530490471376926	0.463853982859093	0.816038286358001
Merged-chr9-88405432-2	chr9	88404932	88405932	+	643.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 8 of 28)	intron (NM_001359958, intron 8 of 28)	33519.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	3.834135984843	4.10344361099376	4.13025012516181	3.97297565416584	3.84641461132375	4.28326283664566	0.0303921806515303	0.95323019160385	0.98938937197317
Merged-chr16-37685358-3	chr16	37684880	37685880	+	905.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31012.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	3.37194846766628	3.55871813531839	3.54316419979615	3.27416153995679	3.24726265951782	3.56129997523192	-0.506166672666191	0.403380842274167	0.77875989555314
Merged-chr7-90475383-2	chr7	90474883	90475883	+	735.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026734, intron 1 of 4)	intron (NM_026734, intron 1 of 4)	612.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	6.03399432711232	6.42094295488735	6.16087296955837	6.04573679702915	6.10477334787095	5.54768783576127	-0.480737388197004	0.150112450645418	0.51688627325901
Merged-chr8-25015283-1	chr8	25014783	25015783	+	671.0	f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	1639.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	4.40070650524293	4.31747840666617	4.42789440713981	4.92486129162289	5.17425657890773	4.86850467538093	1.47671648301713	0.000351078760859601	0.00793172998468794
Merged-chr9-106429447-4	chr9	106428952	106429952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	41.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	7.69564392403974	7.95767550714412	7.53380679546098	7.74114653599809	8.0064886391073	7.89512220559908	0.199551706730611	0.408036659795977	0.781926100186554
Merged-chr15-98831541-4	chr15	98831057	98832057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-49.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	8.17409309319991	8.2006746115317	8.20506629835928	8.0277872234822	8.20577801020834	7.96550769461164	-0.165131650054621	0.435680338496356	0.799278807778569
Merged-chr17-73947433-2	chr17	73946933	73947933	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	2763.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.48325521017458	6.37604607821315	6.10668647475044	6.59459700396568	6.71574781842658	6.25804352166665	0.335724164393969	0.257942591136276	0.655431765745382
Merged-chr6-42392105-4	chr6	42391597	42392597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8141.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	8.02904177154081	7.7142827280319	7.48420358047516	7.89221739451058	8.03393905453042	7.3476843708402	0.0455232878824694	0.874407209688271	0.970754540400126
Merged-chr7-25702593-1	chr7	25702093	25703093	+	541.0	f1_balb.idr	intron (NM_011577, intron 5 of 6)	B3|SINE|B2	15591.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	4.01907014259002	4.09399322971723	4.7956490179048	4.24320339580721	4.06005207227221	4.54713768594231	-0.131947170803009	0.807481879089716	0.954557080558103
Merged-chr15-3228361-4	chr15	3227881	3228881	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42386.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.77377687517352	3.83733307430668	3.45683572013763	3.44630175203615	3.44063265930403	3.64067344416081	-0.706773886603	0.225192288826655	0.620063864646258
Merged-chr9-46011600-2	chr9	46011100	46012100	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	intron (NM_001357241, intron 1 of 5)	1090.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	4.20708828828744	3.76229142328523	3.7648730455526	3.6815629123886	4.03028651186147	4.17609947596975	0.125127749681229	0.823891743800978	0.958451755471188
Merged-chr2-26933486-4	chr2	26933002	26934002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011512)	promoter-TSS (NM_011512)	9.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	8.53253435278858	8.47828305900231	8.23517169721595	8.30106052901247	8.24848430602246	8.21227075846953	-0.239597307794629	0.259195427010948	0.656825376873982
Merged-chr10-95780193-8	chr10	95779646	95780646	+	803.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160517.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.15966891893938	5.0788991307567	5.23511217480756	5.00749927467732	5.00986656347891	5.0342986439835	-0.291591958331074	0.41899096117743	0.788801788481746
Merged-chr14-45212659-2	chr14	45212159	45213159	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 3 of 20)	B1_Mus2|SINE|Alu	6766.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	3.41196663202493	3.51680925277545	3.54401418415676	3.61609869289258	3.79823662385999	3.50392293666346	0.579860212192245	0.310293381950312	0.705829393476587
Merged-chr2-59435037-4	chr2	59434527	59435527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48345.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.43048976680957	5.46429800784093	5.04136302245874	5.14369835751836	5.03423643323889	5.17782994101084	-0.454290326492259	0.216065933527847	0.609541081437027
Merged-chr17-34121185-5	chr17	34120762	34121762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 1 of 12)	CpG-6274	485.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	9.17168787403012	9.30499540737757	8.81056784549734	8.83795580678728	9.15906451712983	8.83376931168245	-0.218802381276353	0.354807301875095	0.741862808502317
Merged-chr1-155413614-4	chr1	155413120	155414120	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	3824.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	6.11839049365938	6.14777954112557	6.14114299752197	6.16680188538351	6.35991155549286	5.94741308087207	0.0802929147298422	0.785218302099069	0.947850129107983
Merged-chr11-54758177-4	chr11	54757684	54758684	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	MER57C2|LTR|ERV1	29519.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	5.9945734711742	6.06972903577516	5.90920510473613	5.85970304745564	5.93996170348583	5.82076814254927	-0.208036207702523	0.481419343476964	0.825079730294173
Merged-chr4-130663792-4	chr4	130663380	130664380	+	882.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356566, intron 1 of 17)	CpG	523.0	NM_001356564	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	6.74947754041001	6.91257368858945	6.67462800468468	7.11773921116981	6.59661033644706	6.78168966658047	0.0958897335757225	0.732766329464206	0.93188067587855
Merged-chr10-117819359-2	chr10	117818859	117819859	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	26615.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.8261215401542	6.93480107518169	7.02567102437846	6.79035040524599	6.81933764105493	7.0058189195759	-0.0890708536601915	0.721693951478146	0.928585725998447
Merged-chr4-132215025-4	chr4	132214526	132215526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2770.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	5.39763712896285	5.44354264958396	5.47018359432976	5.2469707171216	5.45352034215854	5.79061462952356	0.135161228337181	0.700503453428342	0.920919335036368
Merged-chr5-148552686-4	chr5	148552210	148553210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	78.0	NM_011908	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	8.01599442418867	7.63543080265446	7.56254842520664	8.08862176280109	7.71153777444107	7.60938279686213	0.0921747757640937	0.728107515121814	0.930395768235235
Merged-chr7-43662608-2	chr7	43662108	43663108	+	667.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2447.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	4.73245174238866	4.67300368764337	5.08046096739153	4.75899753301391	4.63735150454287	5.31847517030591	0.210784953754865	0.635917204570723	0.896837264160966
Merged-chr5-105624402-4	chr5	105623907	105624907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75562.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.21408873685831	4.61625071025746	4.95721326170845	5.12037623241991	5.13691099230275	4.9862607073686	0.281522440726665	0.49005154366245	0.829980359087456
Merged-chr4-148152036-4	chr4	148151577	148152577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015797)	promoter-TSS (NM_015797)	-48.0	NM_001163706	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	7.99986700683897	8.24095084300728	7.85346860508823	7.88886563543913	7.93329657205379	7.64334693110285	-0.305773515565342	0.198137454274774	0.586422807783967
Merged-chr1-16228775-4	chr1	16228256	16229256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	122874.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	7.01331783210016	7.28830065341727	7.25318366287608	7.29433266263622	7.33939140172669	7.40891205863281	0.234848063379152	0.325270647661824	0.718077478450679
Merged-chr13-44722216-4	chr13	44721724	44722724	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8550.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.09265700352193	3.46726802139895	3.28271149119704	3.26742582591607	3.34254487842787	3.35433439645218	0.113859144924755	0.856959545272403	0.966648789939674
Merged-chr12-112619965-4	chr12	112619481	112620481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-66.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	8.36031023883487	8.44654641602732	8.05720299119663	8.08962459176748	8.45166468140014	7.74760975391971	-0.230058821350496	0.394114512220444	0.77206906441863
Merged-chr5-109557340-6	chr5	109556760	109557760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 2 of 7)	intron (NM_001310694, intron 2 of 7)	1733.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	6.87678597965636	7.04802575782409	7.25319912574676	7.30687601811245	7.47153411771145	7.25319451255655	0.436513312360147	0.0800907957206157	0.374350911713346
Merged-chr3-95228266-4	chr3	95227727	95228727	+	791.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172395)	promoter-TSS (NM_172395)	-197.0	NM_172395	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	5.82016387458153	5.90896284275799	6.02294851999463	6.30786354936008	6.48093586847477	6.23510606129258	0.746453030909397	0.00949128354773745	0.096919319645833
Merged-chr19-46863759-4	chr19	46863248	46864248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98603.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	6.01241623351955	6.23583414502771	6.1713679157017	5.70758509299704	5.4911109725179	5.27932843009576	-1.12772832200136	0.000540242292069791	0.0111516945270511
Merged-chr9-40651602-7	chr9	40651100	40652100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34364.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.41610646496891	5.58630177652089	5.70666376248627	5.26411268589131	4.77377380238244	4.94717395024271	-1.13167784716328	0.00278724615366556	0.0397670058220514
Merged-chr7-99380975-4	chr7	99380482	99381482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-536.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	7.81484053407	7.84051877563755	7.90497240746601	7.8243637476654	8.10049685731393	7.86608869765373	0.127580711414718	0.564423453488005	0.866344709792103
Merged-chr19-5877810-4	chr19	5877327	5878327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	5.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	7.3558264381239	7.29825014150886	7.33070144545576	7.39272882874329	7.64657548525859	7.52400355078391	0.294820021987349	0.199369680456703	0.587805905501548
Merged-chr11-100816316-4	chr11	100815817	100816817	+	729.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	6253.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	4.78728341567594	4.46097696574955	4.73769257851762	4.57460577716872	4.33418599341917	4.94236741232026	-0.0921443498542759	0.83962394181009	0.962784121274377
Merged-chr16-91864287-4	chr16	91863811	91864811	+	871.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	67319.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.38533999446043	6.19723877609423	6.45272955295111	6.51269904183676	6.51504821734963	6.47628136569245	0.260073503529896	0.334726195763491	0.725198429760335
Merged-chr7-125580634-1	chr7	125580134	125581134	+	729.0	f1_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	-22795.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.89400197425451	3.77325855506689	3.77940115724013	3.58554509322493	3.45675812717875	3.94485392599647	-0.499515483519933	0.377268957131719	0.759650454578843
Merged-chr1-37559530-1	chr1	37559030	37560030	+	589.0	f0_balb.idr	Intergenic	Intergenic	-18514.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	4.91964985009728	4.98130089375623	5.25302049401379	5.18046506907871	5.36469921456531	5.01528801911326	0.32705973049723	0.38637256012084	0.7671030298863
Merged-chr2-92183848-4	chr2	92183376	92184376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-306.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	6.22997529367412	6.03005469968214	6.36288482120853	6.48830591026804	5.92424500912083	6.47550925070759	0.173911289933849	0.588665233866211	0.876614432665912
Merged-chr1-106317131-4	chr1	106316621	106317621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 3 of 16)	intron (NM_133821, intron 3 of 16)	145252.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	5.58905019653058	5.60296997758251	5.2392648150415	5.2332831616547	4.81636604957002	5.09642358302391	-0.895304688522784	0.0170628563602976	0.145304078602768
Merged-chr5-88518317-4	chr5	88517814	88518814	+	761.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	9583.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	3.10484411319004	3.28609229741912	3.37289514474628	3.20462150127809	3.23671203187527	3.44300696206638	0.155854497927044	0.803903932055119	0.953557286986578
Merged-chr2-26238113-3	chr2	26237616	26238616	+	633.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	-717.0	NM_001302956	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	3.26908931632955	3.27615507446825	3.63104028657058	3.57594683524457	3.33291467776865	3.38393525661751	0.151539278543482	0.805441709904303	0.95390124680061
Merged-chr9-88482647-4	chr9	88482152	88483152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019796)	promoter-TSS (NM_019796)	-255.0	NM_001284328	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	7.86854285696672	7.57495105013374	7.70914407411665	7.71148230613834	7.44650320659295	7.63046148036205	-0.182670847226208	0.436877424528029	0.799681606793859
Merged-chr14-30763142-4	chr14	30762637	30763637	+	924.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	MTD|LTR|ERVL-MaLR	47522.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	5.31537608621708	4.95036901430381	5.31746056216741	5.08027755180679	5.1365319231144	5.28989113262196	-0.0680681530643879	0.854666485471817	0.965987623019113
Merged-chr17-48232704-4	chr17	48232207	48233207	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021406)	promoter-TSS (NM_021406)	-32.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	2.86684788684785	2.68598327997232	2.97186903408074	2.88036136013482	2.82230774646956	3.26292325243442	0.73104198333205	0.318464299389221	0.712332726440277
Merged-chr10-115316550-2	chr10	115316050	115317050	+	782.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-959.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	6.11339228077999	6.2521949817129	6.30552086411071	6.08076293292627	6.16989915924093	6.30786194385385	-0.0634370781959139	0.822622463103821	0.958134952997982
Merged-chr1-165762595-2	chr1	165762095	165763095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.82072567674898	5.59445542124655	5.58077335683757	5.6824795666223	5.59401639956156	5.82675061356138	0.0396381458659112	0.901822536204261	0.977356766938531
Merged-chr2-158131360-2	chr2	158130851	158131851	+	662.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 6 of 13)	exon (NM_009373, exon 6 of 13)	15041.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.46168910127471	5.49882770044128	5.56602075885467	5.67467731547791	5.41587359804534	5.32869915484418	-0.040680479873471	0.903597774179388	0.977858102400597
Merged-chr9-121330196-4	chr9	121329670	121330670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B4|SINE|B4	32668.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.17805306456225	5.89988414874602	5.97956699386532	5.85466047772605	6.20320242506105	6.08579670507299	0.0585395709223368	0.848533228018779	0.964356989789491
Merged-chr16-10978569-3	chr16	10978041	10979041	+	741.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	14580.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.48994191302514	5.71086093887697	6.02029926172599	6.00814542093052	5.78535817497859	5.99376962640267	0.3242588949682	0.325621420472587	0.718159390122652
Merged-chr1-156461280-2	chr1	156460844	156461844	+	834.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	12984.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.45752333550715	5.63210836307877	5.33012525544445	4.76617854068904	4.41684003245135	4.96017878255523	-1.64521978840057	3.90267687432474e-05	0.00128556586444502
Merged-chr13-114834813-4	chr13	114834311	114835311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008396, exon 30 of 30)	3' UTR (NM_008396, exon 30 of 30)	16574.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	2.72049451385129	2.61582251335187	2.68963669139077	2.7729149811225	2.73129094382287	2.82473887404091	0.530818070457195	0.466378910036692	1
Merged-chr11-68434895-2	chr11	68434395	68435395	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	2770.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	2.05498057070848	2.06047435041414	2.26055348568211	1.99421805483794	2.08189752742414	2.07474210910117	-0.554810948743444	0.543842566559255	1
Merged-chr1-167335908-2	chr1	167335408	167336408	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-14083.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.26276389077139	5.21674406711363	5.36218710761851	5.04774624573716	5.06881796017357	5.3059060849673	-0.287447024923884	0.419406833805069	0.789006446666644
Merged-chr18-80693198-2	chr18	80692698	80693698	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	14975.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.17928176725913	4.89068133347029	4.76392443123627	4.9028098929437	4.80762505633908	5.08681118557977	-0.0796082873898078	0.841776903178725	0.963002495523594
Merged-chr7-88264896-4	chr7	88264402	88265402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-13183.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.59053170802667	6.62551467114672	7.03993076995378	6.78906699122727	6.73792563836201	6.65786402384545	-0.0402633401986873	0.883405179932292	0.973362870329156
Merged-chr11-74828563-4	chr11	74828084	74829084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2340.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.6605358670234	7.52684527996847	7.33338534140633	7.271268124554	7.45727099660846	7.34548279833047	-0.23052566833974	0.332334798744709	0.723521765316285
Merged-chr9-32509235-2	chr9	32508735	32509735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32217.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.46724349841789	6.26795707382341	6.28240275251332	5.94341399138748	6.42255938274937	6.32273833896677	-0.156221044673768	0.603199666142661	0.882544198306255
Merged-chr4-129789738-4	chr4	129789249	129790249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30730.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.34879092913805	7.09888572540173	7.13604484593089	7.2787411358108	7.84245308676672	7.37198569225036	0.487905899580343	0.0726872470799688	0.354177570032908
Merged-chr15-95907066-4	chr15	95906573	95907573	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-77001.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.23844375407535	4.80197609294469	5.00057290311102	5.11724379454705	5.15269891922874	5.16851819927472	0.246638273880075	0.516674991825528	0.844296391152365
Merged-chr9-74938823-3	chr9	74938324	74939324	+	866.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14056.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	2.7296484412003	3.04731535188863	2.85100006522175	2.92901129597345	2.80116478145445	3.15767144734695	0.378873453022425	0.602803096855586	0.882397657327329
Merged-chr17-33814852-1	chr17	33814352	33815352	+	598.0	f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	intron (NM_030697, intron 1 of 10)	4329.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	3.48578138740176	3.48773650718869	3.4901546855486	3.18069220050307	3.22713441603718	3.2834050890721	-1.03363805187422	0.0881578743299983	0.394057780827868
Merged-chr15-75904725-2	chr15	75904225	75905225	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	4619.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	2.92243374415599	2.78266707558182	2.99348564154283	2.9477652704758	2.94651414502952	3.0653962768838	0.41350706314753	0.546599947007727	0.858870520075894
Merged-chr4-138066509-4	chr4	138065988	138066988	+	927.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	68663.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	6.29125037297691	6.35322838042947	6.20950558585997	6.73203877484833	7.14082343226124	6.61897726465483	0.912773293887476	0.0015295214390625	0.0250528385632899
Merged-chr2-117390350-4	chr2	117389847	117390847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47470.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.61937216813632	4.50773741411021	4.17114696919272	4.50914176651098	4.52451078942683	4.29199778359037	-0.0117597339420219	0.979642836238175	0.995312719696526
Merged-chr9-66124880-4	chr9	66124379	66125379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	7.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	6.72961734080716	6.90157107828618	7.10425402399169	6.81811786910586	7.31596883611783	7.00847902337128	0.240119107963228	0.387769230404159	0.767721672469137
Merged-chr11-69034907-2	chr11	69034407	69035407	+	631.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001013256, exon 20 of 23)	exon (NM_001013256, exon 20 of 23)	-10730.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.19254278340946	5.50173420470674	5.34693756870052	5.2824681692808	5.5415118260323	5.55549297649507	0.214075479237333	0.539754636283054	0.856100794415668
Merged-chr4-145210808-4	chr4	145210349	145211349	+	909.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-15844.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.20846462829041	5.06958321801398	4.79537075564079	5.66931545698126	5.76256379523978	5.74670972295365	1.31760099871686	0.000240210484477154	0.0058052378717325
Merged-chr5-21131367-4	chr5	21130871	21131871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44908.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.5748969119817	7.17233051645048	6.94638436821932	7.3775033321279	7.53279911078033	7.06224817803969	0.118138606219321	0.681777712305658	0.914871627621101
Merged-chr7-99151564-4	chr7	99151034	99152034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10390.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.12547506795622	3.48145768934281	3.35333427605523	3.54815828869473	3.54795923329988	3.71622731334852	-0.341631766861585	0.595534332086864	0.879549293510723
Merged-chr6-95117778-4	chr6	95117293	95118293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102670)	promoter-TSS (NM_001102670)	-87.0	NM_001008785	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	5.18925238250074	5.54804040347348	5.33813516044836	5.24587788584261	5.38162017949732	5.27496324321737	-0.127316849731903	0.718442429272288	0.927364481477278
Merged-chr1-162626090-1	chr1	162625590	162626590	+	641.0	f0_balb.idr	Intergenic	Intergenic	-13060.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	5.43700911567979	5.18616852251172	5.66234833900968	5.01600269632188	4.87623927526586	5.02237269653773	-0.955182775724854	0.0108736365031725	0.106594432864747
Merged-chr7-16057999-4	chr7	16057500	16058500	+	895.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13845.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	4.25597217962154	4.59742545850979	4.59261125139236	4.65708692774736	4.93161116005436	4.53337480719699	0.576792295612078	0.193284090899512	0.58042547704774
Merged-chr6-53460136-4	chr6	53459624	53460624	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-113250.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.98552531670686	4.23832041486585	4.08667079277843	4.0197504516864	3.93135572639728	4.33090750961307	-0.04418372467427	0.929672460992958	0.984210069653274
Merged-chr19-37689277-2	chr19	37688777	37689777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3597.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	6.11413648300094	6.15072646298072	6.06000055554624	5.64378357662398	5.89493537200512	5.38766590905303	-0.763077136419656	0.0195914562300194	0.159211435685854
Merged-chr3-146656062-1	chr3	146655562	146656562	+	589.0	f0_balb.idr	Intergenic	Intergenic	-4745.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	5.306894082686	4.99893632606675	5.06191908502263	5.25842520386637	4.88584314957873	5.62363769018943	0.297909589672508	0.467333994499271	0.817936383851132
Merged-chr18-57563083-4	chr18	57562594	57563594	+	746.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 2 of 6)	intron (NM_029290, intron 2 of 6)	-10697.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	2.75207701675236	2.64629501875825	2.74666213553419	2.57267629683165	2.53979202788417	2.63390900705266	-0.764184148009837	0.312007451328818	1
Merged-chr4-135829198-4	chr4	135828639	135829639	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26932.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	5.87803926422924	5.66644220399792	6.31004869471206	6.26227797792476	6.11559878854291	6.04662398465525	0.310798511119394	0.343070374837459	0.731953839730135
Merged-chr1-93579064-4	chr1	93578560	93579560	+	873.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145519, intron 12 of 26)	intron (NM_145519, intron 12 of 26)	56667.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.22160526424684	3.34223247081186	3.35155503978111	3.45092155022144	3.38392745107957	3.58305688609829	0.63786593637653	0.284975413176322	0.682544499238377
Merged-chr11-23821850-4	chr11	23821349	23822349	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50879.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.18889542531191	6.505179345285	6.34849298238444	6.20462753774287	6.37568138327075	6.20724382025154	-0.140094514583103	0.622816233126179	0.891249034616027
Merged-chr14-25855451-4	chr14	25855045	25856045	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13390.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	4.91091919015885	4.48403883699905	4.83996386937928	5.24117605559925	5.07910744255572	4.66114006090253	0.591384435436785	0.169990908889384	0.547285879159135
Merged-chr13-42077179-4	chr13	42076685	42077685	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	25164.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	3.99997450578956	3.8771239505129	4.01075196540753	4.54623554443478	4.58192676675131	4.23129973177118	1.41409578619114	0.00306207159969191	0.0427426360790412
Merged-chr2-121141351-2	chr2	121140851	121141851	+	677.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177846)	promoter-TSS (NM_177846)	-653.0	NM_177846	329504.0	Mm.219449	NM_177846	ENSMUSG00000074890	Lcmt2	D330024M17|Tyw4	leucine carboxyl methyltransferase 2	protein-coding	5.72140473102518	6.23582778484056	6.12653850069924	6.15980240890214	6.47870461203618	6.24947065238449	0.44273171630377	0.162544793222834	0.535984273380581
Merged-chr9-110038079-4	chr9	110037594	110038594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 8 of 17)	intron (NM_001205332, intron 8 of 17)	-13927.0	NM_001311163	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	4.07753063747068	3.61776138676239	3.65688231091105	3.39301414300513	3.76472771139938	3.78049474455697	-0.480717479847781	0.421391733873606	0.790262902892303
Merged-chr14-8099945-4	chr14	8099447	8100447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	1736.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	7.13365166734943	7.13772143260322	6.6243201562733	6.8281921229334	6.72292716437901	6.64873858170528	-0.403270949924895	0.145630960028791	0.508806562677333
Merged-chr5-104032962-2	chr5	104032462	104033462	+	842.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11166.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	4.51359146091094	4.40373643737968	4.00697099794208	5.07227082511596	4.72387925550696	4.49515136258418	1.09441801008962	0.0265773870452786	0.193850913504868
Merged-chr8-117259878-2	chr8	117259378	117260378	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	2859.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.10659314078592	4.14520745855924	4.31514316444687	4.36894205594858	4.19828304264446	4.65760782501681	0.59949596047596	0.205155631302494	0.595811307438411
Merged-chr14-45665063-4	chr14	45664634	45665634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6991.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.88280298965881	7.45698836011553	7.75411309533111	8.12005199490166	8.37289607168957	7.83633812314606	0.606536173487153	0.0192797387848763	0.15758731949616
Merged-chr11-114745355-4	chr11	114744865	114745865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	17953.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	3.61348153082174	3.52171814163586	3.35838338936085	3.54706543089001	3.35380557494869	3.43095280108196	-0.234440100669193	0.691246636229236	0.918256515929559
Merged-chr14-30621621-2	chr14	30621121	30622121	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	4587.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.84346627597222	4.81758338249166	5.20100870444	5.20152749646601	5.12074476292873	5.29453795542287	0.52913750569466	0.161753489262936	0.534879956070039
Merged-chr5-90365541-5	chr5	90365071	90366071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	CpG	614.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	7.84550827765772	8.05543645247584	7.9416243778455	8.04576110060512	7.99259053236588	8.02754714631467	0.099534023881349	0.6397987932331	0.898199312621371
Merged-chr5-92435277-4	chr5	92434775	92435775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183392)	promoter-TSS (NM_183392)	-76.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	7.59939178370398	7.7458512830617	7.51592541668779	7.67953641609236	7.71471090290019	7.16763084694076	-0.105408049999921	0.684658463037408	0.915930759709583
Merged-chr13-35740780-4	chr13	35740293	35741293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-609.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	4.83778365789633	4.68871167306203	4.79455659450347	5.14407296153112	4.55542825379068	4.74320067526709	0.14253416021516	0.738725185698409	0.934076607780343
Merged-chr10-85351237-1	chr10	85350737	85351737	+	645.25	f0_c57.idr	Intergenic	L3|LINE|CR1	-35577.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	2.88442070470338	3.12146627852272	3.08231498665347	3.79091703847055	3.54716658143912	3.870079412068	2.99199299629292	2.95670298022812e-05	0.00101619719776465
Merged-chr1-6215366-4	chr1	6214825	6215825	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009826, intron 1 of 23)	CpG	663.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	7.25188464010955	7.72677822453035	7.60284620507344	7.22458639443542	7.08159168095643	7.26037445491794	-0.526019395006884	0.0391906699643039	0.245574009066179
Merged-chr4-107080389-4	chr4	107079904	107080904	+	811.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346552, intron 5 of 6)	intron (NM_001346552, intron 5 of 6)	13416.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	4.17737858446814	3.7713364899485	3.93321067377152	4.08357431701429	3.73523859321603	4.00282026353955	-0.0899333488188369	0.866211719441727	0.968812096770085
Merged-chr8-106165567-4	chr8	106165078	106166078	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133792)	TTS (NM_133792)	-3276.0	NR_151676	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	2.87619945649502	2.64299387155721	2.68961582899879	2.79243810913395	2.8164330430653	3.00624689476674	0.654180359690849	0.373660739520029	0.757529198534216
Merged-chr15-58632405-7	chr15	58631903	58632903	+	933.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	191024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.98983965298268	6.29092760600259	5.93637943194769	5.78540713082769	6.09339327876623	5.84822649435459	-0.284904013343562	0.365632924765924	0.75071889665134
Merged-chr5-30962435-3	chr5	30961949	30962949	+	849.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2122.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	6.75971455990708	6.71226255283629	6.70972224432139	6.88349515050247	7.04185835007883	7.01504725690801	0.393762542961418	0.108858143590019	0.44079363530285
Merged-chr2-155093612-3	chr2	155093105	155094105	+	614.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	6474.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	3.54477194471966	3.14968457609397	3.33438324540889	3.48926351517464	3.66459044971647	3.46448504408992	0.712713279909196	0.249693427423265	0.646698748997262
Merged-chr14-50823442-2	chr14	50822940	50823940	+	624.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009351)	TTS (NM_009351)	15524.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	3.66854926623959	3.64581218423053	4.00171013959413	4.4285219306653	4.64287972818792	4.84252635751832	2.5399639252418	9.82443514873158e-07	5.34644604222143e-05
Merged-chr17-86787992-2	chr17	86787481	86788481	+	746.75	f0_balb.idr|f1_balb.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34117.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	2.36494628716626	2.41374327446315	2.55737698415561	2.0428593129525	2.01231448399885	2.31949029968631	-2.57107274368461	0.0130770751135126	1
Merged-chr13-103915891-3	chr13	103915388	103916388	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	4698.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	4.44659793599571	4.63595901020575	4.50589907105553	4.47781780714663	4.67718352759371	4.39687974270891	-0.00268402816798034	0.995054138354365	0.998961028701257
Merged-chr5-31240846-4	chr5	31240354	31241354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347326)	promoter-TSS (NM_001347326)	-29.0	NM_001347326	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	7.64053388077464	7.80698151450265	7.67960025149032	7.52031646712247	7.45555365797257	7.77059109701421	-0.188751051385726	0.415119547563752	0.786136540436176
Merged-chr12-24786092-1	chr12	24785592	24786592	+	833.0	f0_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-45507.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	3.22316812563441	3.84390461301451	3.36442339184376	2.89731591988051	3.10331440541823	3.14087730206895	-1.91216462805271	0.00795204810330831	0.0857090697642588
Merged-chr9-96712906-1	chr9	96712406	96713406	+	645.0	f0_balb.idr	intron (NM_001359959, intron 2 of 2)	ID_B1|SINE|B4	6539.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	5.45953851467761	6.00569925551593	5.50888411564728	5.13621145957017	5.55333748730058	5.25593078126628	-0.668926363115187	0.0787578498769142	0.37084959382934
Merged-chr13-8777875-3	chr13	8777371	8778371	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	93173.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	2.52607785751787	2.61943218657591	2.72062417888905	2.49127497101456	2.47935038602715	2.85140904594636	-0.0511003923652368	0.948477322226814	1
Merged-chr16-57556403-4	chr16	57555885	57556885	+	721.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	7143.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.98784465214181	6.98760226238381	6.73936098003655	6.9387490904729	6.96248987701322	6.71638640619897	-0.0509899360119256	0.842351648816908	0.963014702903935
Merged-chr18-7626968-4	chr18	7626439	7627439	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161620)	promoter-TSS (NM_001161620)	-76.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	3.26392088863516	3.18182066845052	3.44860138133721	4.0565756717302	4.04595091931307	4.08839747836672	2.88270618643054	2.71452201804027e-06	0.000130034512422046
Merged-chr7-64286696-3	chr7	64286120	64287120	+	773.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1050.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	5.04380344440985	5.34759035383039	5.1347864592674	5.21851916873082	5.3167167152012	5.09489304942099	0.0709481885084419	0.845587659919509	0.963834884892227
Merged-chr2-59166773-2	chr2	59166273	59167273	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	B1_Mur2|SINE|Alu	5923.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	2.66911903803514	2.39114722682398	2.5997053242475	2.6429695704475	2.62361341887628	2.79631436749541	0.723166124606887	0.357627322668759	1
Merged-chr3-89281258-6	chr3	89280788	89281788	+	763.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-337.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	4.32629422228388	4.10051545996004	4.3464929886967	4.28900128274037	4.32704659800797	3.92916016644411	-0.148178349745968	0.76269939399526	0.941663714620562
Merged-chr5-121205891-2	chr5	121205391	121206391	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011290, intron 3 of 6)	intron (NM_011290, intron 3 of 6)	1390.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	3.92985378819133	3.8562468979588	4.04518651888686	4.09906767021839	3.70120777265431	4.20219469331175	0.201346079453745	0.703761260552589	0.922240250851389
Merged-chr19-12556487-4	chr19	12555988	12556988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17022.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	3.47266209070213	3.65060531511032	3.61319723028073	3.56850851880924	3.70764995165095	3.92895331761966	0.535307626886054	0.339912970494061	0.729608383720945
Merged-chr9-25571072-3	chr9	25570589	25571589	+	705.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89492.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.50581865800603	6.43291801645905	6.02690885976471	6.2184758534862	6.30070407042241	5.96476788556833	-0.284136271768874	0.355142382040004	0.742125300102581
Merged-chr1-144250601-4	chr1	144250118	144251118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1514.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.81787538415785	4.83328786181283	5.05717145493151	4.92177924178325	4.88445587747634	4.79949294404154	-0.0569868540791239	0.882632311384646	0.97322373493158
Merged-chr10-117807684-6	chr10	117807179	117808179	+	895.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-14974.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	3.74250178565136	3.62441827587939	3.88513562253349	3.50876785972304	3.60943657161076	3.76072829960078	-0.417944144503554	0.449541444229638	0.807840625692929
Merged-chr11-21046421-4	chr11	21045935	21046935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44889.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.22032258392887	7.23791857519337	7.16781362355757	7.31214469906738	7.5026201875584	7.11038586714287	0.17526805357904	0.473496674629596	0.82090428702971
Merged-chr13-38659114-4	chr13	38658608	38659608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025380)	promoter-TSS (NM_025380)	-80.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	5.62758996545325	5.59206576304399	5.68004890032067	5.66879561786255	5.34255351285947	5.15887754534391	-0.411685637660901	0.236789846424604	0.633237835240546
Merged-chr1-189688204-4	chr1	189687715	189688715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-129.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	3.93094724058826	3.7454520226732	3.44155391004214	3.48853493927482	3.35176004772893	4.02420462974136	-0.240023873323784	0.708005662759622	0.923606271223831
Merged-chr19-46334221-2	chr19	46333721	46334721	+	822.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164291, intron 1 of 8)	intron (NM_001164291, intron 1 of 8)	4439.0	NM_001164294	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	1.81427403154724	1.85492320486196	2.01432277572806	1.69049434008819	1.65446692030681	1.82299001703721	-1.67837335958167	0.115143538135859	1
Merged-chr7-109960481-4	chr7	109959986	109960986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021494)	promoter-TSS (NM_021494)	-16.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	7.9781099354975	7.58972401317478	7.49941098147634	7.58757100658206	7.26820794677566	7.20371603738319	-0.503097682354682	0.0577452425115597	0.310512223012916
Merged-chr8-126551140-4	chr8	126550619	126551619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.78164571310626	6.66889720724217	6.16310764859568	5.93793942670301	5.91827179760982	5.71286089785361	-1.18626903321021	0.000188233371000249	0.00475693873663692
Merged-chr5-134098981-2	chr5	134098481	134099481	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-767.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	3.71836539142168	3.74290122041415	3.76992025615785	3.73185818913986	3.71607007683897	3.68337147203893	-0.103003246252413	0.845650741754065	0.963850894494439
Merged-chr10-91171669-4	chr10	91171149	91172149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011605)	promoter-TSS (NM_011605)	-30.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	7.2724581126946	7.63350833673212	7.53186743088433	7.3801504778986	7.45130237855659	7.91497405625556	0.161192137893313	0.547982831627819	0.859456555901125
Merged-chr2-129593377-4	chr2	129592892	129593892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291021, exon 1 of 6)	5' UTR (NM_001291021, exon 1 of 6)	223.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.77347986734752	8.90491619263564	8.79944005833205	8.75180048373136	8.72496967039432	8.81076213716776	-0.0915741261259176	0.638264400570309	0.897407473025053
Merged-chr4-86748517-4	chr4	86748010	86749010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_184088)	promoter-TSS (NM_184088)	-45.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	6.29031456933143	6.12735440810388	6.039759772614	5.9428575417621	5.84274877700332	5.86076688642324	-0.484845459561537	0.0985558554128603	0.41862141491375
Merged-chr16-44346613-1	chr16	44346113	44347113	+	544.0	f1_balb.idr	promoter-TSS (NM_144550)	promoter-TSS (NM_144550)	-788.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	3.61783821422897	3.81429048705855	3.7780087788934	3.6265784166326	3.74210317045086	3.84704594852614	-0.000279488467673664	0.999585654080602	0.999920050950963
Merged-chr14-31182371-2	chr14	31181871	31182871	+	997.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347583)	TTS (NM_001347583)	-13730.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.46482329350732	6.58945288667959	7.06482380516743	6.49923437227363	6.69665028169783	6.40408397784801	-0.279758251319586	0.353461651277035	0.740735826287885
Merged-chr1-86438172-2	chr1	86437672	86438672	+	830.950012	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A1|DNA|hAT-Charlie	11843.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.59462900315252	2.83383521358015	3.00518891940351	3.16146953887663	2.9113457794232	3.1426518914737	-0.485631368242027	0.521677881153338	0.847183372504239
Merged-chr2-114199275-3	chr2	114198777	114199777	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	2155.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	5.58347096233692	5.69492470007302	5.3161060503384	5.12711384700969	5.59442259633037	5.47341697257886	-0.250657033818745	0.488938202741836	0.829423271678195
Merged-chr5-34336969-4	chr5	34336440	34337440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304270)	promoter-TSS (NM_001304270)	8.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	8.82438783426026	9.20833412263601	8.92120385401268	8.7159792894131	9.05808172166769	8.78663379741361	-0.18032588578191	0.429795386049518	0.795863007201232
Merged-chr13-81135725-4	chr13	81135247	81136247	+	852.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	171673.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.1176361973017	7.30126145271765	7.36782742055241	7.16197175660493	7.40829227386097	7.33884107144796	0.0690487859714996	0.774706927840454	0.944493464665915
Merged-chr9-60832908-3	chr9	60832410	60833410	+	880.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	L1MB2|LINE|L1	38468.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	4.88915492285523	4.46427543360944	4.33076757791282	4.33565141340859	4.16039768510268	4.1555964526665	-0.959437592445705	0.0443671730983306	0.265303897891907
Merged-chr7-19071710-2	chr7	19071210	19072210	+	600.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031255, intron 5 of 5)	B2_Mm2|SINE|B2	-4490.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	3.34255836473803	3.28864302268865	3.32196864691973	3.43928223552005	3.54707845089989	3.60873360230282	0.822938870686183	0.16106994569129	0.533701339641638
Merged-chr2-181288127-4	chr2	181287644	181288644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198169)	promoter-TSS (NM_198169)	-178.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	7.98164936515519	7.44612921255689	7.51570013084978	7.92359981712283	7.83840887756041	7.43351913830802	0.114248173424889	0.679058341292623	0.913581173754914
Merged-chr1-93236384-4	chr1	93235849	93236849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172463, intron 1 of 30)	CpG	452.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	4.92989797001469	4.57051304726175	4.55659700171821	4.56407057166019	4.2923825506055	5.11894824061716	-0.010824924915375	0.982255542127791	0.995992226862322
Merged-chr13-112810515-3	chr13	112810013	112811013	+	860.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	MIR|SINE|MIR	9736.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	3.5984964724784	3.70950490779935	3.84327534973126	4.04898459578479	4.48913826182977	3.69244473669646	1.25324606957997	0.0294958539358426	0.206557002204535
Merged-chr17-56031136-4	chr17	56030627	56031627	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	5510.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	4.90107364308195	4.76827961724216	4.65914600168603	4.38584185084671	4.3555834976621	4.38188542060913	-1.01122552983972	0.016571129275353	0.142472672529817
Merged-chr12-113015261-4	chr12	113014794	113015794	+	962.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	786.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	5.10040760772236	5.12782316646869	5.38121166826704	5.20277965220774	5.13193656296926	5.52585686258075	0.174579502553115	0.635483360564647	0.896559725081609
Merged-chr11-116618548-3	chr11	116618048	116619048	+	794.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	5704.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	5.94747245415564	6.06563180567966	6.01395959600341	6.07621710582011	6.10698066812104	6.14054801491679	0.166263754544358	0.559398172532807	0.8649455419793
Merged-chr16-23272365-4	chr16	23271867	23272867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-18103.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.60913045117742	7.37232518770214	7.51138472300383	7.16601523504453	7.43030187238738	7.3836319045484	-0.246746368778653	0.30089272319077	0.697653874358754
Merged-chr19-12467145-2	chr19	12466645	12467645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6366.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.17232811776956	5.96851241906432	6.1704872842064	5.40755105136217	5.75316607589172	5.67209998481658	-0.853585057781647	0.00733581475936954	0.0808689022916826
Merged-chr1-92216380-4	chr1	92215873	92216873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-36032.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	6.93834801731968	6.79171396445032	6.97392649589769	6.93319054207311	7.20726982334296	6.97741297303773	0.232111339461907	0.356707927686173	0.743448231367782
Merged-chr5-141081088-4	chr5	141080572	141081572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80476.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.91897746361458	7.83361519112733	7.52487106739096	7.77131475637014	7.96944837271705	7.28590790725277	-0.0830849116546085	0.76391411840427	0.941838906550437
Merged-chr19-32762650-4	chr19	32762128	32763128	+	884.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	5051.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.28093881929811	6.5989559675332	6.00822725164031	6.66527289512683	6.88134256007857	6.44421164805933	0.565469517884692	0.0695811725292066	0.345200567201318
Merged-chr16-55803751-3	chr16	55803253	55804253	+	883.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18385.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.08038478221027	6.02576288740215	6.14016581515521	5.64483297349468	5.94907664451826	5.67346369494629	-0.534355317183658	0.0836164188165809	0.382682744452454
Merged-chr2-30965414-2	chr2	30964914	30965914	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	2504.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	6.91488558223964	6.7119261448285	6.64012961096325	6.90803411253606	6.85594454947735	6.78032494925857	0.13159411434367	0.606152655059225	0.883894414431453
Merged-chr19-6877038-3	chr19	6876538	6877538	+	889.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-18827.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	3.18338464128802	3.17335090056249	3.37641647046631	3.7157788593007	3.52572908186689	4.03595245710312	1.98317901321851	0.00157766553855659	0.0257171336998225
Merged-chr15-100216315-4	chr15	100215799	100216799	+	828.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159361, exon 38 of 38)	3' UTR (NM_001159361, exon 38 of 38)	-11560.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	3.60196613481794	3.59555625306516	3.74227480994789	3.75379632860622	3.8982395083296	3.95812794280751	0.752661350175415	0.156965380128006	0.527816433819287
Merged-chr18-5821563-4	chr18	5821075	5822075	+	982.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	228928.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.74160205496762	4.32163045287787	4.94449087091228	5.27269253912053	5.1382901323217	5.11208035561038	1.08557435424541	0.00965465354613579	0.0980655853437922
Merged-chr18-23804986-2	chr18	23804520	23805520	+	876.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1050.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	8.08423834504713	8.19963072368746	7.60685502688112	8.06233987320411	8.49332963559515	7.71277059676157	0.203119410804008	0.493249560628337	0.831208279358962
Merged-chr4-142089050-4	chr4	142088541	142089541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027137)	TTS (NR_027137)	-4737.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	5.31171453958717	5.27858351560958	5.37469519548932	5.52052651050941	5.04069954366318	5.52323994597228	0.0990336135914479	0.787451355495873	0.94877064431094
Merged-chr12-112672036-3	chr12	112671533	112672533	+	942.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	2243.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	4.22140808009961	4.39872119636444	4.52401639246678	4.28978221785466	4.28879628150877	4.46952102126936	-0.090809258613723	0.840349297900381	0.962819298477451
Merged-chr8-80982840-1	chr8	80982340	80983340	+	758.0	f1_c57bl6.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	32066.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.92355801001149	4.8562038299844	4.96721673524973	5.22940952169424	5.12414456887435	5.03244881441802	0.473604612395833	0.197860931792677	0.586043439320662
Merged-chr15-97361867-4	chr15	97361398	97362398	+	863.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-114611.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	7.4206999158015	7.7075924946658	7.44631723203318	7.34136628769108	7.56717445441607	7.23163186712317	-0.20419276109221	0.408800529144185	0.782383854304252
Merged-chr16-23337487-4	chr16	23336997	23337997	+	878.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	47027.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.22146602786863	3.96854849643459	4.16741272450291	4.18271055893453	4.25405953227869	4.09339939031096	0.175408941262748	0.713627421818159	0.92557476402444
Merged-chr7-46957983-1	chr7	46957483	46958483	+	720.666687	f0_balb.idr	intron (NM_001040695, intron 1 of 11)	intron (NM_001040695, intron 1 of 11)	535.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	5.38990905233751	5.66877941216253	5.52059369611577	5.61815320469969	5.66285763363361	5.19636010718704	-0.0200043067271977	0.954845077846634	0.989682846540972
Merged-chr14-45664101-2	chr14	45663603	45664603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5960.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	6.43337521378063	6.37464064539931	6.49937943920225	7.32295769929513	7.56216094260209	6.97896822488747	1.36886307306544	5.64551332129559e-07	3.27810099398719e-05
Merged-chr10-91182151-3	chr10	91181652	91182652	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-10533.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	7.32668432615875	7.28881382630547	7.20951137274763	7.55271026614175	7.70431917315612	7.59877526339798	0.504557591384524	0.0251540048306469	0.187781664628429
Merged-chr4-150009556-1	chr4	150009056	150010056	+	897.6666869999999	f0_balb.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-533.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	6.79773183957084	6.57919306114702	6.87043056045034	6.59408508910339	6.70871670422317	6.6229475446035	-0.16272647742443	0.533446671276609	0.85246558650222
Merged-chr7-120835093-4	chr7	120834593	120835593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7738.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	6.77744880262567	6.80668822236109	6.74286578069891	7.02896939949496	7.38893982110346	7.15104012759343	0.651686092228954	0.00998399870989185	0.100210924566065
Merged-chr2-148408237-4	chr2	148407699	148408699	+	984.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009378)	promoter-TSS (NM_009378)	-11.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	5.53033258527431	5.64522384237923	5.83518067518355	5.41316886091749	5.58814034578809	5.50662246140714	-0.298967116463401	0.363163484522128	0.748751355867913
Merged-chr14-70785531-4	chr14	70785034	70786034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11153.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.95310101945899	5.35447203038417	5.37124068770611	5.00498442009603	5.15734948424411	5.51613348904431	-0.00395388529024545	0.991924985796991	0.998351393644539
Merged-chr6-134245089-1	chr6	134244589	134245589	+	912.0	f1_balb.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-151240.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.21063556153352	4.10876476234103	3.94659584098115	4.406286820723	4.54481251348394	4.40603933212709	0.95671904161132	0.0404994103911855	0.250766770799973
Merged-chr11-29247444-4	chr11	29246970	29247970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025740)	promoter-TSS (NM_025740)	-198.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	4.2207192761644	4.36726082971389	4.37738075668347	3.94194419370187	3.97988011703068	3.98744589087382	-1.0047444890035	0.0354967256192152	0.231299261032215
Merged-chr13-64309245-1	chr13	64308745	64309745	+	722.0	f0_balb.idr	intron (NM_025370, intron 2 of 5)	intron (NM_025370, intron 2 of 5)	3465.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	4.33990444174782	4.54386966056252	4.63438791087589	4.22002537972892	3.90012260224282	4.20172559912763	-1.08460432143079	0.0228637546714923	0.176539470141001
Merged-chr13-8646028-3	chr13	8645595	8646595	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 3 of 10)	L1_Mus3|LINE|L1	224949.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.39355744057945	5.38060471084146	5.39382763142901	4.62917424152691	4.44049896621901	4.83092188561815	-1.6763100205852	1.51849674152248e-05	0.000574323076675465
Merged-chr11-43729102-4	chr11	43728584	43729584	+	916.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133795)	TTS (NM_133795)	18889.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	4.08493206054728	4.18337446166452	4.06454072732625	3.76883298569536	3.95085804379614	4.35015643415164	-0.222791012448404	0.668024551009048	0.908976375106763
Merged-chr13-112671880-4	chr13	112671384	112672384	+	962.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	Kanga1|DNA|TcMar-Tc2	11118.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	3.70469690887824	3.73758894384635	3.83832277885856	4.57058577617943	4.64045854451007	4.2685326584047	2.21243676977889	1.11520697903146e-05	0.000439366204125236
Merged-chr2-83705919-3	chr2	83705413	83706413	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-18484.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.17042567968209	5.2643252315184	5.32836116773051	4.71760240501035	4.67214036128056	4.82363818807722	-1.13268804467728	0.00258214360368292	0.0375949265048553
Merged-chr15-58822895-2	chr15	58822395	58823395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175212, exon 1 of 7)	exon (NM_175212, exon 1 of 7)	532.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.73046254517628	7.79150192536578	7.27354354209344	7.82784091132275	7.5852055730575	7.57289474681217	0.0580092001340426	0.821303904444997	0.957948040777966
Merged-chr1-138152959-2	chr1	138152459	138153459	+	849.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	22167.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.20417778546599	6.41305597023989	6.09590955616869	6.17767177059847	6.17773449855102	5.78073466438027	-0.304883827641249	0.321794799813061	0.715225624458294
Merged-chr2-91002297-3	chr2	91001802	91002802	+	913.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198683, intron 4 of 13)	intron (NM_198683, intron 4 of 13)	-33325.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	4.90448806697698	4.80502991071812	5.12702600019851	4.98157213758788	4.86773995234427	5.02672451226944	0.0280389601881776	0.941802428162873	0.987058762320129
Merged-chr14-61599537-4	chr14	61599022	61600022	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023233)	promoter-TSS (NM_023233)	10.0	NM_023233	66597.0	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	4.3290278184266	4.06136338021247	4.12737869525582	3.78179320188458	3.92462084196097	3.5542211887303	-1.2276009541435	0.0261043512740043	0.191728383865068
Merged-chr16-95832343-2	chr16	95831843	95832843	+	894.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66370.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.79162804155986	4.20942356911661	4.43047340129772	4.40696916950286	4.15093430784715	4.45517300231055	-0.424683640738292	0.378516345584758	0.760964396915746
Merged-chr6-91705756-4	chr6	91705255	91706255	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	21688.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.35081007509543	5.92156037227694	5.86902865107557	6.54374446079268	6.54116861929269	6.50860946489817	0.751815313447218	0.0125864745899617	0.11820489590085
Merged-chr5-134531290-2	chr5	134530790	134531790	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	21144.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	3.93693140379573	3.44218510287083	3.43295966788987	3.46533549124407	3.57012344565412	3.56277144358688	-0.346993853934239	0.567579170898263	0.868161687753501
Merged-chr5-8672075-4	chr5	8671595	8672595	+	883.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 5 of 29)	intron (NM_011076, intron 5 of 29)	-49143.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	2.53395003679109	2.61296584739512	2.7090713254928	2.42752131901089	2.38976489095799	2.53619337574381	-1.03097930495626	0.19609364499907	1
Merged-chr19-12571103-3	chr19	12570592	12571592	+	723.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2418.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	3.90345421258297	3.83641799869408	3.9933748496007	5.56007864999607	5.53351460462613	5.17104791236955	4.02346662217036	2.62766082419862e-15	7.61820215539787e-13
Merged-chr11-120491839-4	chr11	120491300	120492300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-37.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	6.9546488840175	6.93912135571436	6.80919203934722	6.6791888898079	6.85751752132535	6.98116573493279	-0.101174188157415	0.689540042757178	0.917397716197234
Merged-chr19-53600860-3	chr19	53600380	53601380	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007790, intron 1 of 28)	CpG	484.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	6.3971163523101	6.15111179580723	6.32988304149218	6.09704764305858	5.92843437214098	6.14996717028675	-0.407372791756376	0.158607784255289	0.530413080824572
Merged-chr19-46356928-4	chr19	46356417	46357417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	37.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	3.6443343922147	3.66309778776409	3.88894910539487	4.05478114706871	3.87052124545365	3.8071826200277	0.602210334785407	0.255263770757656	0.652364778963479
Merged-chr16-4640005-2	chr16	4639505	4640505	+	898.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139307)	promoter-TSS (NM_139307)	60.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	2.37171128031377	2.29883596697235	2.50501556188948	2.17076372045979	2.0974630107346	2.32788212405453	-1.38581405405977	0.121025569674957	1
Merged-chr2-155512601-2	chr2	155512095	155513095	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144786, intron 1 of 14)	intron (NM_144786, intron 1 of 14)	2251.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	1.75930783301323	1.69819503165425	1.65167029455484	1.88578243642857	1.73892994915158	2.00750611624294	1.58027795313206	0.135778763895418	1
Merged-chr14-20825102-4	chr14	20824603	20825603	+	926.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-11559.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	8.00076594177804	8.02861075920681	7.26919313893551	8.16803347851382	8.51987793303617	7.70642042297544	0.511217686981398	0.11042060770886	0.443987529053774
Merged-chr10-127574559-2	chr10	127574059	127575059	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 26 of 88)	intron (NM_008512, intron 26 of 88)	-40000.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.70451818103997	2.48181731427377	2.89640745626444	2.70118223205046	2.64036435951118	3.07960966883033	0.589171460481098	0.457513612308709	0.812307535537887
Merged-chr18-39460987-4	chr18	39460476	39461476	+	890.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	26269.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.05809558277083	5.42059469462964	4.7999910797335	5.6286700253586	5.61436498499857	5.25645772959969	0.755180347357526	0.0572706372795021	0.308698269531179
Merged-chr4-137357733-4	chr4	137357216	137358216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	43.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	8.4173104627927	8.18721546330682	8.18109632106263	8.1001278321974	7.77552907831046	8.01474838434104	-0.425653479769343	0.0612106065197324	0.320798675645283
Merged-chr1-171843109-4	chr1	171842554	171843554	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	3357.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.02813380059758	7.06024821477775	6.78023053025631	7.27444958874316	7.56468450271001	7.0339601148613	0.527634529403369	0.0505926492010831	0.286452990931119
Merged-chr7-127008897-4	chr7	127008401	127009401	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	5693.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	7.74125601484983	7.70258240645547	7.37138540175218	7.2287892644926	7.39812406302592	7.05525116898457	-0.556209481663279	0.0275752297411883	0.198038988115381
Merged-chr6-117919422-1	chr6	117918922	117919922	+	555.0	f1_balb.idr	intron (NM_001166429, intron 3 of 3)	intron (NM_001166429, intron 3 of 3)	2128.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.26381071243464	4.53137378753609	4.63439330742587	4.5608719454338	4.4623492775262	4.4125265720872	0.00580678774326332	0.9894996955515	0.997611022725407
Merged-chr17-24171316-4	chr17	24170801	24171801	+	956.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1623.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	8.07400461274036	7.97191260116286	7.80643913482068	8.38305942161584	8.771140832516	8.21952643888977	0.739787446371657	0.00272249189387421	0.0390832101367671
Merged-chr19-17361400-4	chr19	17360911	17361911	+	885.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-4744.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	6.57638653590822	6.65031355991861	6.45142565400976	5.47836568830493	5.74287017212581	5.88463740167716	-1.46377012640425	1.03285218816526e-06	5.56977089260242e-05
Merged-chr1-88247044-4	chr1	88246571	88247571	+	905.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	20051.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.36998791993528	3.48508517435148	3.34647800050529	3.36893662011426	3.0486784886804	3.67883403961607	-0.069842672829721	0.915300194891224	0.980959026698783
Merged-chr16-91406277-4	chr16	91405764	91406764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	29.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.93810652561981	8.70656321580289	8.51693839306185	8.79886668361646	8.87908993591135	8.55573413258064	0.0265937430786446	0.907279687355035	0.978875083701163
Merged-chr12-99626495-3	chr12	99625981	99626981	+	559.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045288, intron 1 of 1)	B1F2|SINE|Alu	1493.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	3.63415463565946	3.72680929708723	3.92560459373898	3.59202078467613	4.11234765451632	3.84820680338389	0.362584213856028	0.518942049395972	0.845542912781001
Merged-chr15-57988045-4	chr15	57987541	57988541	+	852.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173862, intron 1 of 3)	intron (NM_173862, intron 1 of 3)	2138.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	2.33354464704237	2.12373485984461	2.24724428417791	2.36729370923181	2.22151573358933	2.45235705595101	0.732409961041313	0.398578631703958	1
Merged-chr11-3179104-3	chr11	3178605	3179605	+	966.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	14358.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.85009823243444	6.29233666908246	6.14746581604001	4.40934450048517	4.1088154980179	6.5302846308508	-0.867556237893453	0.572476856276103	0.869840399318717
Merged-chr16-91835934-2	chr16	91835434	91836434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	intron (NM_001110275, intron 16 of 28)	95696.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.07017813245005	5.08413682130931	5.16216719650899	5.19219499911002	5.14801727464112	5.43701260124916	0.313499735960447	0.382194377416056	0.763819347060188
Merged-chr17-78201443-4	chr17	78200893	78201893	+	932.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 1 of 16)	CpG	1145.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.67668014203356	3.58502718483362	3.51159437242992	3.70624537107492	3.50560416505009	3.58298542008007	0.00835387085573532	0.988122678812236	0.99731652667245
Merged-chr2-91444670-4	chr2	91444171	91445171	+	971.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311144)	promoter-TSS (NM_001311144)	43.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	3.53049628933463	3.51976131714242	3.43461926638237	3.68775665327592	3.73460135333431	3.5071657250929	0.546045913197234	0.335414309481463	0.725534974480296
Merged-chr2-75830535-4	chr2	75830030	75831030	+	835.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.64596313078185	5.58903375485461	5.38108843784795	5.36413816772586	5.41190472961184	5.77358903076104	-0.0628316111010385	0.855481525810734	0.966226965829968
Merged-chr10-60369604-4	chr10	60369103	60370103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	22752.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	3.75433975260725	3.56603948332263	3.86510971346847	3.52958017847137	3.48693156010953	3.41077233678235	-0.882865786250522	0.124019701714412	0.471278757298044
Merged-chr9-100528623-3	chr9	100528105	100529105	+	573.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	RMER6A|LTR|ERVK	17529.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	4.39246557932259	4.7621266075802	4.60720158484162	5.00164216508107	4.98547479304073	4.75698053504115	0.749430910787638	0.0713713150020119	0.350548745518577
Merged-chr2-35507335-4	chr2	35506828	35507828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-45879.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.08432855746166	5.52222393302242	5.67455125213176	5.11416978930283	4.90306102704902	5.09230598206269	-1.47724186864583	6.87927882584628e-05	0.00205755223774629
Merged-chr9-124143847-4	chr9	124143375	124144375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22332.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	6.79982850862056	6.46687673030254	6.32210487617577	6.54315086430256	6.98033076306456	6.59149199124779	0.278366755308187	0.354684096906178	0.741838331331706
Merged-chr16-77028742-2	chr16	77028242	77029242	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	14673.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	3.14435481862248	3.2656490640724	3.14687850734723	3.37083456744712	3.26457992070883	3.499272727336	0.754463599717489	0.226171040497978	0.621140322788657
Merged-chr15-76787456-1	chr15	76786956	76787956	+	687.5	f0_balb.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	30714.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	3.79000712962058	3.84239129134982	3.87081331678953	3.16079031218276	2.97132210488481	3.24297997930718	-3.13558385527699	8.32560164767094e-06	0.000341933199358047
Merged-chr9-118689206-2	chr9	118688706	118689706	+	853.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-22486.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.16648578105597	3.11031516169631	3.32424125287703	3.10362910219814	2.81444118236416	3.34178773003609	-0.439753305774994	0.5285431593737	0.850585575598857
Merged-chr9-106356671-4	chr9	106356167	106357167	+	977.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11965.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.19028649547708	4.06585812515128	4.25446555141551	4.56350359102513	4.16773564280749	4.40986005963815	0.585088980411782	0.214174988217593	0.607411938158068
Merged-chr4-53203818-4	chr4	53203308	53204308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42388.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.68712617574684	4.3189128848106	4.24457264249995	4.01676538822888	4.22778039867326	4.06802153038409	-0.873788500581666	0.0738662309477373	0.357278459844174
Merged-chr8-41283839-4	chr8	41283344	41284344	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 16 of 37)	intron (NM_023662, intron 16 of 37)	44085.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	4.73084671165594	4.75322309850559	5.37657206077431	5.99341320279335	6.1315578587942	5.79664082391085	1.97436067946577	2.20523041072588e-07	1.42569448060736e-05
Merged-chr15-95789175-2	chr15	95788675	95789675	+	792.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1668.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	4.96074828635787	4.92556342683935	4.54338488697647	5.08276735930769	4.70356040180776	4.5199823619439	-0.0823533478898406	0.852088521633054	0.96531854415899
Merged-chr9-31174822-1	chr9	31174322	31175322	+	964.0	f0_balb.idr	intron (NM_001357698, intron 3 of 17)	intron (NM_001357698, intron 3 of 17)	37026.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	3.56902785771843	3.42818149118048	3.34640442433473	2.93401238350909	2.85051606745308	3.30666714467655	-1.8519133309909	0.00922157707059685	0.095152403880236
Merged-chr3-127914344-2	chr3	127913879	127914879	+	743.166626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1792.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	3.38429177351365	3.48251751156334	3.56040431993885	3.41473043119969	3.05570955508536	3.77612747333924	-0.1156654725909	0.861207956410198	0.967789299492425
Merged-chr13-37349354-1	chr13	37348854	37349854	+	868.0	f1_balb.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	4009.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.41032339696785	5.66711315475566	5.74052873489477	5.61223952367616	5.8150123211804	5.85079080145561	0.284827946030044	0.381707089374936	0.763340610786527
Merged-chr19-29487549-5	chr19	29487033	29488033	+	943.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34454.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	8.15042676883077	7.77702885860584	7.74612114951161	7.91801389415745	8.11149678412218	7.40704889171712	-0.0756315293841514	0.787260539437696	0.948762744996405
Merged-chr9-100450844-3	chr9	100450235	100451235	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35738.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.96721068614384	3.78685940348611	3.64400735169142	3.67451110193315	3.50646204027783	3.6046601468807	-0.739316173403134	0.183178305824751	0.566171407862482
Merged-chr2-23172486-4	chr2	23171980	23172980	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013771, intron 5 of 18)	ID_B1|SINE|B4	15975.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	4.26733438696738	4.31362656304414	4.36657785730893	4.48578065505504	4.83569214331537	4.38977789771486	0.718589536308783	0.110924478073893	0.444841551070303
Merged-chr17-71311925-3	chr17	71311397	71312397	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357336)	promoter-TSS (NM_001357336)	-341.0	NM_001357336	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	4.85571789477317	4.63071644485787	4.79980875615362	4.62218652196559	4.52904914775689	4.3143577471709	-0.625819018863296	0.142611778167841	0.504032656746792
Merged-chr6-83317196-4	chr6	83316701	83317701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008638, intron 1 of 7)	intron (NM_008638, intron 1 of 7)	403.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	4.61140305090881	4.28220213170185	4.23448860382989	4.69173179375547	4.59922203620466	4.30382005763273	0.390707925457548	0.400000817500487	0.776322347924812
Merged-chr10-30718313-4	chr10	30717825	30718825	+	902.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-62458.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.2393539248822	5.15761493506637	5.13185956351109	5.30815090380144	5.42634256345253	5.23049508491045	0.305969418880794	0.379306850488714	0.761744609742594
Merged-chr7-144553794-4	chr7	144553300	144554300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033319)	promoter-TSS (NM_001033319)	-71.0	NM_001195086	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	6.86410053901962	6.2983184653038	6.34242221880905	6.74556529539142	6.0907901575911	6.21493025691003	-0.240572895410302	0.48313157456727	0.826011835108275
Merged-chr7-89269889-4	chr7	89269381	89270381	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68906.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.13154857635456	4.98183137296384	5.39964926774036	5.19051045431126	5.17932421228756	5.19141740347879	0.0346306025422767	0.924768945967642	0.983070278897208
Merged-chr4-59546499-2	chr4	59545999	59546999	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	2865.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	5.57387126333444	5.55724065343434	5.63460372911908	5.66486545775039	5.51002791323899	5.50009296562302	-0.0470451811965467	0.883205990025398	0.973347392063704
Merged-chr11-53859924-2	chr11	53859424	53860424	+	774.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-668.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	5.83984498973219	5.81820814098276	5.83252928959943	6.24591501280332	6.20169404691022	5.61579294701242	0.410699860423699	0.213416372885022	0.606363093458203
Merged-chr16-52182223-4	chr16	52181718	52182718	+	956.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150669.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.68721936780495	3.57192662936497	3.63233266653062	3.8015985990289	3.86085061540738	3.53477395454912	0.395005268937337	0.476675973699643	0.822735473036153
Merged-chr11-20930821-4	chr11	20930330	20931330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99722.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.13756793505433	5.31503950372684	5.08265815615689	4.71621996992915	5.10883729467676	5.24466606097029	-0.308961015071829	0.429017647025367	0.795570481157701
Merged-chr3-87566306-4	chr3	87565797	87566797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40719.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.05398322331598	3.85892965498118	4.10106110918484	5.13530210963822	5.06576709091632	4.91376164433303	2.69545607988905	4.42625663543919e-09	4.37101772634913e-07
Merged-chr10-20347753-4	chr10	20347253	20348253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027930)	promoter-TSS (NM_027930)	-66.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	5.35817191574032	5.29911212210837	5.12900182892031	5.68256963187202	5.74598191611628	5.43046609371985	0.69566024601684	0.0420947111947136	0.256921934210352
Merged-chr19-41322419-1	chr19	41321919	41322919	+	702.0	f0_balb.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-58415.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	6.4659603238669	6.45869871815366	6.91687684049177	6.6316023315809	6.82130997418484	6.97488318816624	0.303013000575101	0.289750730055815	0.687430963346381
Merged-chr5-99250023-4	chr5	99249534	99250534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2893.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.20718637365781	8.47285338754255	7.83245129303261	8.24400124613752	8.21993619567325	7.91397667152071	-0.0937225086493043	0.718239908833005	0.927293456311605
Merged-chr4-43047420-4	chr4	43046911	43047911	+	976.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	5.31607302374008	4.7796702541405	4.75361272242456	4.56669984553613	4.56655954787355	4.37747405196321	-1.0895685232646	0.0144361296639243	0.129314401666036
Merged-chr7-131800816-3	chr7	131800250	131801250	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-165710.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	2.90059243878552	2.92362216621529	3.25308575727878	3.16028887113862	2.80847023097641	3.27047360679795	0.262808297139674	0.713488265491684	0.92557476402444
Merged-chr2-34360199-4	chr2	34359734	34360734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	11811.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	5.19055037070666	4.98371296217611	5.26749845609658	5.05725118053468	4.95084875465669	5.10855731153457	-0.23539608465074	0.523541559788082	0.848272401665061
Merged-chr14-25461962-4	chr14	25461475	25462475	+	958.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	2790.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.05681903930154	6.86942009292205	6.72315519316706	6.3995729782055	6.50127723600014	6.10127232706781	-0.852249364201895	0.00266551389304849	0.0384922040980179
Merged-chr7-118116222-4	chr7	118115717	118116717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170669)	promoter-TSS (NM_170669)	-70.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	6.57139376708155	6.88457722513047	6.90934617009316	7.07035130447361	7.24670486817314	6.98150241398646	0.485895474369878	0.0629369776726814	0.326385792345807
Merged-chr16-23281334-2	chr16	23280834	23281834	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-9136.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.10353015944629	5.82276957114186	5.82661846087842	5.866840770473	5.87239076725289	5.984537715077	-0.043405203165442	0.886876563001344	0.973794308941933
Merged-chr1-152784365-4	chr1	152783870	152784870	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15783.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	2.79166612957744	2.57148166637828	2.92822194320447	3.01098727073956	2.75502412650258	3.1150367331964	0.974060021283349	0.196174019317841	0.583940557712492
Merged-chr18-62181029-2	chr18	62180532	62181532	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013754, intron 1 of 1)	B3|SINE|B2	932.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.00872538448311	6.11365932495395	6.39496528944844	6.35886763253006	6.61888858729769	6.22065897056723	0.416359447256687	0.166007181914131	0.541109862183596
Merged-chr10-45577890-4	chr10	45577402	45578402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172473)	promoter-TSS (NM_172473)	73.0	NM_172473	209462.0	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	4.84632836285742	4.52240413180449	4.87266906020376	4.24720021336733	4.06228844454251	4.57162099868519	-1.14497837098695	0.0142166345715336	0.128083720269613
Merged-chr11-120453875-2	chr11	120453375	120454375	+	781.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012065)	promoter-TSS (NM_012065)	-375.0	NM_012065	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	3.77374662072742	3.94927235452043	4.08910608154936	3.81686385851189	3.6931173321009	3.77370580635805	-0.566613174082233	0.28137534098488	0.679520750186356
Merged-chr4-55531471-5	chr4	55530979	55531979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010637, intron 2 of 4)	CpG	996.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.12217651517099	6.08836271869016	5.89728262850273	5.94761166939436	5.73432922740191	5.95870703842764	-0.298098087734234	0.32247105002235	0.715966451783264
Merged-chr3-144572058-2	chr3	144571558	144572558	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1631.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	4.13402960736319	3.94664321627031	4.16215129145545	4.07224294850164	4.14833278951583	3.9917004038296	-0.00660266146479922	0.989164271624291	0.99753218656301
Merged-chr16-23988766-4	chr16	23988265	23989265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009744)	promoter-TSS (NM_009744)	87.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	8.42053330751965	8.54688706076434	8.32883744124108	8.51224589103134	8.47589680398654	8.12692623493488	-0.0682340561173605	0.761711075515088	0.941284569035843
Merged-chr19-44591950-2	chr19	44591451	44592451	+	671.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29097.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	3.47524662243055	3.26275375741264	3.34794204509129	3.27669026316044	3.32997642825361	3.18550041187072	-0.381251816268359	0.537218693232705	0.854346835765953
Merged-chr13-37337416-4	chr13	37336896	37337896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7949.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.80851273722879	6.74975321278048	6.61048060254934	6.81540005447871	7.00632529711221	6.88991224572191	0.277038834173043	0.272832167789193	0.669957480476964
Merged-chr9-95659591-2	chr9	95659091	95660091	+	643.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	L1MB7|LINE|L1	21963.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	3.64287078321715	3.7627163508755	3.79330589815085	3.74272294277065	3.61354136868428	3.60153085184864	-0.263582832396526	0.626638967623755	0.892916235446326
Merged-chr10-14043539-1	chr10	14043039	14044039	+	640.0	f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	77160.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.64362848760191	4.84810373352153	4.67387090387404	4.57940968513655	4.40355737546294	4.44569856056847	-0.610690232582054	0.145828678897253	0.509223056367729
Merged-chr10-80226534-4	chr10	80226023	80227023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023431)	promoter-TSS (NM_023431)	-75.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	4.23625388584511	3.68794443582422	3.62135192273215	4.10808506814792	3.82751967155955	3.91612775807947	0.202578300272828	0.725679604567459	0.929707128236285
Merged-chr6-128644181-1	chr6	128643681	128644681	+	571.0	f0_balb.idr	Intergenic	Intergenic	-18204.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	3.73503689482937	3.80470147686891	4.1462493311447	3.36367396699871	3.605359352329	3.86034962800051	-0.923964344308324	0.116938280373259	0.456623982040366
Merged-chr11-74896600-4	chr11	74896116	74897116	+	980.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 1 of 22)	CpG	464.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	5.35324404625188	4.86776781109639	4.82083403595788	4.63026691602426	4.62461244998502	4.72828101517976	-0.869152130021163	0.0381835684601677	0.241775996075918
Merged-chr2-13538944-4	chr2	13538423	13539423	+	882.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	5741.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	6.728855421032	7.24106331378486	6.8423520667597	7.10385597978621	7.24504834198826	6.82370764514142	0.173490190077849	0.543470587577753	0.857551302506722
Merged-chr19-42000081-4	chr19	41999606	42000606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MIR|SINE|MIR	18343.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	7.17008465746002	6.86327509589091	6.97501201581965	6.93422066547375	6.90450938184599	6.99236316178527	-0.105664755944554	0.672672031239512	0.910949422492829
Merged-chr4-120816226-2	chr4	120815726	120816726	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-513.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	5.49998184594852	5.67913908115675	5.37447074476138	5.66589933866117	5.82618008361207	5.40658331523999	0.232905085663783	0.496324936341326	0.832977778960629
Merged-chr13-55105368-4	chr13	55104974	55105974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012017, exon 1 of 7)	exon (NM_012017, exon 1 of 7)	165.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	4.85268077103694	4.73671270289047	5.2692425600891	5.00189268009053	4.83160541863608	5.24404501786779	0.143428324239019	0.728327761304595	0.930478966998914
Merged-chr11-69037891-3	chr11	69037387	69038387	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Thr-ACY|tRNA|tRNA	-7750.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	4.26371258045573	4.48024408475683	4.43274336079417	4.50591491517117	4.67568771452652	4.50013823495304	0.437832915226046	0.312749854323837	0.707413942140844
Merged-chr2-158159475-1	chr2	158158975	158159975	+	558.0	f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13083.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.92942116937254	6.99117764677255	6.9811566890568	7.2799411980687	7.39499669183238	7.02550809641099	0.430136079802465	0.0819653229390185	0.378718446338826
Merged-chr19-11350170-4	chr19	11349587	11350587	+	869.951782	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	-13941.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	5.89455679771225	5.60745837668013	5.52298333137388	5.40510571827677	5.61521431888533	5.3701167664971	-0.401463697670787	0.238970756698946	0.635631523582239
Merged-chr17-56276921-4	chr17	56276411	56277411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-144.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	7.98919236432333	7.86445950196926	7.29249124379429	7.69365305329076	7.64237078008957	7.42009074628784	-0.238304160536974	0.384641817709594	0.765823037135813
Merged-chr9-83565481-2	chr9	83564978	83565978	+	739.666626	f0_balb.idr|f1_balb.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	17140.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.51403172274853	3.5839947489659	3.64570838392547	3.14018268704672	3.436086208926	3.27955285969498	-1.07459197550415	0.0840379246557253	0.383661081936741
Merged-chr15-73613932-4	chr15	73613381	73614381	+	780.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	L1MC|LINE|L1	3443.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.50124073794593	5.52517490934497	5.42401701589233	5.43641956244297	5.7273444463754	5.68444796855491	0.257372191628113	0.43367764175603	0.797909324825555
Merged-chr12-4212055-2	chr12	4211555	4212555	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 20 of 21)	intron (NM_001159537, intron 20 of 21)	21910.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	4.29220770481523	4.14187485080803	4.73700126408756	4.25058386790818	4.34619348240589	4.69605847972703	0.0850709442749357	0.862460526106806	0.96807605498315
Merged-chr11-116142795-4	chr11	116142310	116143310	+	832.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172571, exon 31 of 31)	3' UTR (NM_172571, exon 31 of 31)	-3942.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	5.02611190737721	4.81280295976253	4.71561303788961	4.33634347769434	4.54731291402664	4.19049483401553	-1.16075250000321	0.00983752394484007	0.0993157840818069
Merged-chr4-130802230-4	chr4	130801723	130802723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	9686.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.66699637060622	8.3448841498343	8.27628584818702	8.63248208525565	8.61292013995811	8.17091631709329	0.0698581229178147	0.776939714717646	0.944960604705842
Merged-chr7-107607961-4	chr7	107607478	107608478	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	1134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.86979897346479	3.66120830814029	3.77940187849687	3.69349051201321	3.389780059945	3.64193779056718	-0.678200825829046	0.229570791087272	0.62518794057613
Merged-chr10-77580696-2	chr10	77580196	77581196	+	883.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	-959.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	3.19564368728109	3.11344344072211	3.38517152009402	3.07611953000795	3.22273236155224	3.34915189372954	-0.0520601007195316	0.935133966234302	0.985775370567048
Merged-chr10-67036372-4	chr10	67035894	67036894	+	915.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 3 of 7)	intron (NM_178606, intron 3 of 7)	31319.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.55968712403154	4.66915626544958	4.12904591824873	4.46388218567837	4.6974839994581	4.20129547340029	-0.00448533013841599	0.992750764657203	0.998571202997915
Merged-chr8-11557597-2	chr8	11557097	11558097	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-813.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	7.59908610958185	7.70660140828325	7.62152993028847	7.69583332041948	7.81332654962703	8.03200651429194	0.296649217883385	0.192204025354031	0.57920205203809
Merged-chr6-59212706-2	chr6	59212206	59213206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081145)	TTS (NM_001081145)	3836.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	2.9623803643974	2.88370705295301	2.93939473804962	2.80815216786798	2.84994460709066	2.82933069671898	-0.489568990874402	0.481867594852478	0.825208669475694
Merged-chr2-129634094-3	chr2	129633581	129634581	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38619.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.90821740632632	5.75462279623677	5.5447857992825	5.41895146976536	5.16242200197035	5.55059099112739	-0.714549085153247	0.0379676268780252	0.241069080295057
Merged-chr9-63716354-4	chr9	63715859	63716859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	41635.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.02461561412053	4.3583240112878	4.46863444052869	4.97798434739625	4.760397008032	4.44428617726947	0.207714911610745	0.667166826132474	0.908584711187268
Merged-chr2-27514331-2	chr2	27513831	27514831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-816.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.85796471054886	5.23756588258326	5.53350762960656	5.21561824733249	5.14679878104982	5.37679084908429	0.0323424415928515	0.934326560769548	0.985707838096286
Merged-chr11-79076696-4	chr11	79076200	79077200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-16864.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.32751956771272	4.08680485893027	4.15458897230824	4.25962293450551	3.97107164880373	3.97663650687887	-0.336097748477324	0.493337889849686	0.831208279358962
Merged-chr1-85961113-4	chr1	85960596	85961596	+	971.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033290)	promoter-TSS (NM_001033290)	-41.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	3.44255172676352	3.19490750746712	3.36499254616288	3.4463947869791	3.23342286547642	3.32335589449271	-0.00792400571921679	0.989721642403024	0.997611022725407
Merged-chr10-51519389-2	chr10	51518889	51519889	+	592.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	28491.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.80853958100587	4.04497126391003	3.7373218765435	3.63701097611832	3.69305764773111	3.58761670991262	-0.767778168204111	0.160847491769122	0.533594426285713
Merged-chr7-25757341-2	chr7	25756841	25757841	+	808.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-2582.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	3.49429704629776	3.28865311328347	3.61594487274301	3.5083648844421	3.33184559515393	3.87540853812648	0.410458977859241	0.505943976137007	0.838203647443267
Merged-chr11-86685091-2	chr11	86684591	86685591	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	1010.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	3.94136300363435	4.09398472001248	4.22835813353514	4.18735359786145	4.18421583225814	4.01456401740202	0.142327925246813	0.769075019632363	0.942996711234581
Merged-chr9-45296316-2	chr9	45295816	45296816	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-22784.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	6.00703207777204	6.09243851083659	6.35164273406928	6.14986795351651	6.15765833135781	5.87726781684076	-0.124243419715317	0.681143801774902	0.914599647187446
Merged-chr8-115419812-2	chr8	115419312	115420312	+	886.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287082.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.88216019184831	3.47167246654416	3.76798325862574	3.52632192978396	3.45084307740229	3.83692754933686	-0.376375663728064	0.52174565701813	0.847186270857377
Merged-chr17-57095659-1	chr17	57095159	57096159	+	635.0	f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	B3A|SINE|B2	-7877.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	3.4192636480971	3.38296188191983	3.34110395785807	3.51095675003202	3.23996155223323	3.35565070276203	-0.0472340819957877	0.937573192696837	0.986057836872162
Merged-chr1-161412303-3	chr1	161411814	161412814	+	705.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	16876.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	2.92845571084425	2.90807465619878	3.13029949897501	2.87799796749434	2.89793736884274	2.71949406700516	-0.725742266251245	0.312142858611579	0.706992486576265
Merged-chr6-83034061-4	chr6	83033551	83034551	+	961.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-173.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	7.9001096889073	8.21707670294328	7.6571370488485	7.89634500949854	7.95970967473383	7.32353272320478	-0.264990845969919	0.353189027054239	0.740535792477092
Merged-chr12-85490146-4	chr12	85489647	85490647	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16257.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.18788801392458	7.16416544625585	7.26004510720663	6.96305221410612	7.05398154109897	7.31740339740207	-0.134171419776936	0.584792671693955	0.874713344232516
Merged-chr3-15285655-3	chr3	15285181	15286181	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	46621.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	7.22100179513488	7.52943284677645	6.87860797643748	6.74097698953266	6.81582310684135	6.90755357377357	-0.649005127855258	0.0198859345964565	0.160803580748489
Merged-chr7-126482611-4	chr7	126482129	126483129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4726.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	5.81469153319563	5.93338782850663	5.85355173172512	5.83690527894362	6.03081202492038	6.03164649758753	0.176718440960975	0.553738139234986	0.862464539420562
Merged-chr5-102046874-4	chr5	102046375	102047375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23046.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.76162356418528	6.49122781737511	6.43835887313361	6.72288129767718	6.69306140438865	6.5532150707353	0.134159621052191	0.618790590499055	0.889515655407396
Merged-chr18-54963296-6	chr18	54962800	54963800	+	928.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	26880.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.07364562709035	5.15510711855048	5.45372782043682	4.84942422316467	4.58756472047573	5.07394059723618	-0.840448574090193	0.0371776228587632	0.237941361651563
Merged-chr5-101993196-2	chr5	101992697	101993697	+	750.733337	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	76724.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.13499155452764	4.06020606182329	4.23644827738127	4.63570225942701	4.6657762257491	4.60702365259882	1.30308598814919	0.00310900650341202	0.0432826821674741
Merged-chr8-27031245-2	chr8	27030745	27031745	+	819.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 6 of 11)	intron (NM_153592, intron 6 of 11)	7446.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	6.50077269787485	6.43255098374623	6.13227110191075	6.16509939110962	6.17779711602034	5.64095396314953	-0.568880558553236	0.0790225036657178	0.371444158005708
Merged-chr1-172305908-3	chr1	172305410	172306410	+	594.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6457.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	3.84778095244905	3.74776438692861	3.45606912790294	3.47266807864019	3.26499905338811	3.35020294245789	-1.24950692807582	0.0388475382256993	0.244380884606032
Merged-chr15-100225064-2	chr15	100224564	100225564	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2795.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	2.63961577502492	2.43711682658875	2.77389340608698	2.48571432411183	2.4557269275698	2.47660002473942	-0.872013599389533	0.278182605200729	1
Merged-chr15-100543061-4	chr15	100542548	100543548	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8960.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	4.13183309043287	4.44794380449952	3.88293224104021	4.45119959634957	4.09357753159975	4.06389977613261	0.0866777783829315	0.868912929069044	0.969755809171886
Merged-chr2-30441954-4	chr2	30441450	30442450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25900.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	8.19751634762569	8.38823789147151	8.32163433023159	8.33154361897796	8.76855698811894	8.25858396069516	0.245484483702035	0.307035444937984	0.703099001056797
Merged-chr2-132144706-2	chr2	132144206	132145206	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	CpG	402.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.68644190134157	4.27915773808689	4.60606529886871	4.56966413609549	4.25514593097396	4.55234227226912	-0.183295261964268	0.688248371784512	0.917193226920892
Merged-chr15-57975277-2	chr15	57974777	57975777	+	871.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-10626.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	4.31160248417807	4.37739281383767	4.29110603835991	4.59511923854376	4.18268312800436	4.21851312033681	0.0455012987603199	0.922243801545305	0.982542868764899
Merged-chr11-83045756-4	chr11	83045252	83046252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5219.0	NR_073524	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	6.09256324861595	6.42967891747237	6.37051621749653	5.93307397759639	5.87654484225699	5.92744118289279	-0.672175338008871	0.0228445687358209	0.176445825245538
Merged-chr2-152671856-4	chr2	152671371	152672371	+	834.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	2410.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	3.12691577485504	3.17999164379244	3.08768076471476	3.21654424473211	3.01406967697389	3.16025313655841	-0.0208615418473531	0.974255737231317	0.994260005145451
Merged-chr10-25361547-2	chr10	25361100	25362100	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	1802.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.87100892857835	4.56620098270256	4.63509413079902	4.9175017646677	4.92046974718518	4.86075417478414	0.454860687151991	0.25542870070989	0.652537847534371
Merged-chr19-40692001-3	chr19	40691525	40692525	+	708.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	32255.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.39190204761141	5.44062529827161	5.81029826533578	5.93746407062149	5.89123582733282	5.58190046393242	0.501475567531097	0.138673490782162	0.497617035578841
Merged-chr10-127413723-2	chr10	127413223	127414223	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 3 of 25)	intron (NM_001359244, intron 3 of 25)	-7144.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	3.47150855864101	3.25566449309505	3.2263336972518	3.26963836869119	3.13767334441939	3.46562810431109	-0.141091360751132	0.823406914320893	0.958366850481353
Merged-chr3-104791030-4	chr3	104790539	104791539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	2005.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	5.98343097657413	5.60699271359322	5.92935339781709	5.75085354003481	5.4602968544551	5.39757732029366	-0.547386158707919	0.106937779253352	0.436454439973323
Merged-chr15-93340844-4	chr15	93340331	93341331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3896.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	4.11845754236534	4.25805576200428	3.84893939122972	3.88080353188535	4.03360277818754	4.16754817552286	-0.192693084127153	0.70603454462426	0.922878730238431
Merged-chr11-102248807-4	chr11	102248305	102249305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-77.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	4.95866732249976	4.82548379223343	4.46071678995671	4.92605102904792	4.5554697533319	4.66332555420674	-0.121167383558808	0.781182135790762	0.946170623764308
Merged-chr11-46794102-2	chr11	46793602	46794602	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16697.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.30912102490249	4.13589896246612	4.34246818479004	4.68765635383933	4.72616166322885	4.66286366623178	1.09743177003423	0.0108593259907436	0.106491785154719
Merged-chr1-37431196-2	chr1	37430696	37431696	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026123, intron 1 of 5)	intron (NM_026123, intron 1 of 5)	1057.0	NM_001356528	67387.0	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	5.80641810869846	5.62242423483652	5.26463433819496	5.36818555022056	6.0005019680039	5.69724735590934	0.238048882597038	0.527713992462827	0.850108008834301
Merged-chr11-3183989-2	chr11	3183488	3184488	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	9475.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.97955537232796	6.30604564726178	6.2396019014137	5.06693836926348	4.63096155809938	6.94636282220323	-0.243715483362555	0.837073075991495	0.962035641067236
Merged-chr3-103023183-2	chr3	103022664	103023664	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	2618.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	3.67346904077193	3.89801232290222	3.76756126117107	3.89680033115468	3.91558659693806	4.03457217854331	0.506286119973242	0.328591039156449	0.720781461685861
Merged-chr2-43738676-4	chr2	43738175	43739175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10149.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	7.03748210433205	7.23618092702179	7.07950866366679	7.05447122585097	7.45855835644463	7.04436543937448	0.133209981604321	0.610848439688043	0.885849400663435
Merged-chr1-173977810-4	chr1	173977326	173978326	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	5018.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	5.48445275917463	5.58135864508681	5.13802463432273	4.01409254890856	3.80505879079026	4.36276866298392	-3.54370704659874	1.29230013689548e-12	2.43831541475736e-10
Merged-chr10-14208441-1	chr10	14207941	14208941	+	719.0	f1_c57bl6.idr	Intergenic	Intergenic	242062.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.89469428121516	4.58829253178731	4.35343550522476	4.33638253915223	4.36119500373176	4.42248387869572	-0.671228095887273	0.138141969698661	0.496860930453499
Merged-chr10-13832818-4	chr10	13832299	13833299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	36158.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	6.93233742805171	7.22938890603465	6.37501654697467	6.95192476701356	7.32669696242838	6.59608705342155	0.151261053753395	0.660285450011427	0.905906890165946
Merged-chr3-31093391-2	chr3	31092891	31093891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1667.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	6.22862579499423	6.01976237654832	6.07606470230939	6.48690206805846	6.7113571309626	5.96712993056582	0.542656996197697	0.0938946821755568	0.408170352356916
Merged-chr18-12226110-2	chr18	12225610	12226610	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	10276.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	3.98989418896727	4.19033031648938	4.13964633131118	3.95261836320041	3.91466768053953	4.45646337466168	0.0320091758604094	0.950555420243287	0.988444308820256
Merged-chr14-20702968-4	chr14	20702462	20703462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025366)	promoter-TSS (NM_025366)	-65.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	8.69532377957113	8.78018179266705	8.39810664951875	8.64964612812288	8.76801718927981	8.28472052606348	-0.0682691828318302	0.777017566167501	0.944960604705842
Merged-chr2-98665145-4	chr2	98664652	98665652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1197495.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	10.6873060955689	11.7805302788447	10.6166813593846	10.7274423138007	10.8880248336366	10.659494771073	-0.522602768065722	0.302269737856202	0.698958713820873
Merged-chr16-14109858-4	chr16	14109362	14110362	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081154, exon 27 of 27)	3' UTR (NM_001081154, exon 27 of 27)	49412.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	4.16526196723015	4.37413467822237	4.13154737786576	4.29971665909641	3.85811773893957	4.58006156504992	0.105684074106657	0.839741653911776	0.962784121274377
Merged-chr2-69128406-2	chr2	69127906	69128906	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7394.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	3.16058216561016	3.31159032078647	3.2891495321742	3.27290336173301	3.10928872173128	3.71664762036729	0.503703956770139	0.444487925425452	0.804233372367419
Merged-chr16-33956358-3	chr16	33955855	33956855	+	890.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	10683.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.77866982044618	4.49880696747451	5.04026011256396	4.79622399229558	4.4264974479206	4.94051984460598	-0.122348260019466	0.785353836325351	0.947890183314723
Merged-chr10-8767482-2	chr10	8766982	8767982	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	118588.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.02875796366573	4.07190872557917	4.49858653379845	4.36979748211095	4.1118854328988	4.18590567294407	0.0556416258943125	0.910316761374089	0.97984424692051
Merged-chr12-69681172-8	chr12	69680710	69681710	+	931.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135559, intron 1 of 22)	intron (NM_001135559, intron 1 of 22)	642.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	7.3742557648034	7.72753641170391	7.26455824244001	7.04262504871325	7.09525792136335	7.48207408798654	-0.393755269939432	0.149161243763123	0.51537803021029
Merged-chr6-114045868-2	chr6	114045368	114046368	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-3788.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	3.0321675938278	2.85313842587112	3.35046282911308	3.02848071527687	2.80331417193534	3.2104204790074	-0.308215187906348	0.669664030762431	0.909715790834065
Merged-chr5-30907816-4	chr5	30907292	30908292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-4.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	7.32139124563845	7.53976976941113	7.36204124837584	7.24674849429146	7.44024095129175	7.23590141278303	-0.143413279354229	0.545821474599932	0.85834429351586
Merged-chr6-17642410-2	chr6	17641910	17642910	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	5400.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.28181062987264	5.15828133990682	5.28096332356103	5.70834587244676	5.62198778713123	5.34540640516414	0.655687792858741	0.0557996277940917	0.304078553244533
Merged-chr2-70977785-4	chr2	70977292	70978292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	40582.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.66558900511246	7.91309058039905	7.01813847599577	7.38206753781274	7.85121097731496	7.26610663351776	-0.0889420518141745	0.78206939045281	0.946388527339532
Merged-chr4-43005907-4	chr4	43005394	43006394	+	986.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053081, intron 8 of 13)	intron (NM_053081, intron 8 of 13)	4407.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	2.79836441957713	2.29265424041094	2.47455910524748	2.5888666396173	2.36794735205221	2.80143625082378	0.30958674836774	0.7254052399031	1
Merged-chr17-35089278-4	chr17	35088779	35089779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	-12.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	8.39774853985418	8.43310555328209	8.01330914268547	8.3693282576498	8.45239519386388	8.0615368698154	0.013376969035155	0.95599951492057	0.989807313282509
Merged-chr13-74062247-4	chr13	74061731	74062731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028959)	promoter-TSS (NM_028959)	54.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	6.51395079412082	6.762733891131	6.22270798260275	6.77877879528614	7.00581295273576	6.23874304113758	0.31309850168962	0.343774184088667	0.732572352000629
Merged-chr4-120951741-4	chr4	120951229	120952229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-28.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	7.77505345458631	7.98067229004577	7.65533970587204	7.71557053940761	7.91802995244988	7.70268540111412	-0.0417082208850557	0.857332378188827	0.966747388099837
Merged-chr3-87334180-4	chr3	87333641	87334641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23740.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	8.10586775513402	7.66426455278308	7.70013452002943	7.73215271568156	7.99398128987804	7.87588280709156	0.0425829258874417	0.863327535038138	0.96822816879546
Merged-chr6-72513815-2	chr6	72513315	72514315	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30576.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.28943789471911	4.50427467219742	4.12667741193741	4.23246576225812	4.20690398452207	3.99028546701673	-0.463037597755042	0.338583880059636	0.728543936569625
Merged-chr11-70185327-3	chr11	70184842	70185842	+	981.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	18719.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	3.74985450908305	3.69625697529544	3.54278642839241	3.46169386980184	3.31815442703649	3.61376312149237	-0.756096054872327	0.192265063951607	0.579301544078987
Merged-chr17-31077675-4	chr17	31077162	31078162	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	19968.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.07479157662314	6.61180727569423	6.62269495953927	6.82203025273517	6.80728506911367	5.85413460965138	-0.333698798474708	0.365616783418941	0.75071889665134
Merged-chr2-35209538-5	chr2	35209134	35210134	+	952.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8514.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	6.13226706059806	5.93474063543627	6.04812745719461	5.8635157603362	5.89914627513899	5.77068281853721	-0.331668629874148	0.264772143384103	0.662666328517541
Merged-chr2-72202415-3	chr2	72201923	72202923	+	756.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83214.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.74199274628325	2.92361135190898	2.97992848332003	3.78698395223949	3.46039165545717	3.64074066690909	3.65738700786525	6.57001557767941e-06	0.000279344842201098
Merged-chr1-88212816-2	chr1	88212316	88213316	+	996.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_201645, exon 1 of 5)	exon (NM_201645, exon 1 of 5)	857.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.7705079911498	3.7032324883648	4.05629226482567	3.74696557648297	3.97434490371152	4.66064332626479	0.958834672882613	0.102336900375863	0.426615671667073
Merged-chr3-132155594-2	chr3	132155094	132156094	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	70302.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.5662232717443	3.47758006840602	3.5279018885737	3.6358641398138	3.51295141947247	3.54413651513591	0.145496267907111	0.795718878467517	0.951283863759945
Merged-chr19-43529453-2	chr19	43528953	43529953	+	557.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4848.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	3.87655514078026	3.70518858030772	3.99353964977386	4.03193432105769	4.22852496289255	3.96463260059716	0.69664357567109	0.17275945736406	0.551420036378406
Merged-chr18-60743844-2	chr18	60743344	60744344	+	885.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	2902.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.76113311938374	5.93355482982333	6.10860600591466	6.1110584505616	5.93776006657648	6.03972832615524	0.165797188624911	0.58351744673332	0.874062789752135
Merged-chr2-122570316-1	chr2	122569816	122570816	+	794.0	f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	40961.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.8352016209665	6.61834617892047	6.53075826874549	6.93017516246092	6.83892239704754	6.4584189582222	0.147880169470951	0.599230093753065	0.880928581989958
Merged-chr5-21331719-3	chr5	21331169	21332169	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-41004.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	5.35099087388557	5.20033080357517	5.0493269947548	5.27816075699293	5.53401477401256	4.96175326754885	0.165794328913552	0.66698073140204	0.908463623849139
Merged-chr11-116027434-1	chr11	116026934	116027934	+	605.0	f0_c57.idr	Intergenic	Intergenic	-2882.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	8.40370282574952	8.33570698331347	7.80201744217363	8.35241094592992	8.75325716253485	8.16061830630518	0.332623286055087	0.230966624111503	0.626757683823173
Merged-chr2-25331786-2	chr2	25331286	25332286	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029983)	promoter-TSS (NM_001029983)	785.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	6.1872512896477	6.29410781310293	5.97812535775797	6.23413591337091	6.16273221451298	6.25985364374093	0.0777453104210529	0.786199794430601	0.948394331310521
Merged-chr15-83134418-4	chr15	83133848	83134848	+	963.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-11547.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	6.28908630958019	6.09944182242917	6.17371729387397	6.52399135481508	6.44554091584846	6.37600413851999	0.432001460393833	0.114931020078626	0.452587804955148
Merged-chr5-140105944-4	chr5	140105454	140106454	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	68964.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	5.78175012735868	5.68895888866376	5.75613912789099	5.58552083646318	5.42995597820526	5.74206212683296	-0.299055593184805	0.35036358410126	0.738366841617277
Merged-chr3-69633234-1	chr3	69632734	69633734	+	628.0	f1_c57bl6.idr	Intergenic	Intergenic	-34274.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	6.3400602328886	6.26055874958957	6.51383399567019	6.0545145229353	6.16766875298082	6.60496299680646	-0.137205555664814	0.652914223210685	0.903038291998383
Merged-chr12-79725090-4	chr12	79724592	79725592	+	994.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	199641.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.09863954011015	4.77967498382038	4.68803960403542	4.73042716459014	4.95187792733954	4.62756887083648	-0.195997081176876	0.639761899464411	0.898199312621371
Merged-chr4-70412263-4	chr4	70411794	70412794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	6.26567389826777	5.97279855012921	5.9714862859219	6.33622844702261	6.35875379813919	6.1261209181457	0.339083672024075	0.249810601252979	0.646894033899099
Merged-chr15-58818204-4	chr15	58817715	58818715	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	5212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.95889348377358	7.0699018807494	6.47941411124015	6.32315402397578	6.56434548529222	6.06039990940357	-0.831807024735001	0.00811470451317723	0.0869329642245978
Merged-chr7-35076719-4	chr7	35076218	35077218	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20152.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.87416558701656	5.07086599430495	4.99686884943598	4.80229917487131	4.70020645224788	4.92055435075033	-0.403159373826533	0.296655266093772	0.693257309330038
Merged-chr6-91472393-4	chr6	91471907	91472907	+	892.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133928, intron 1 of 2)	MIR3|SINE|MIR	1016.0	NM_133928	72170.0	Mm.41622	NM_133928	ENSMUSG00000034203	Chchd4	2410012P20Rik|2810014D17Rik|AI838740	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding	4.02021779939769	3.87391508951988	4.20692479540626	4.16690756002317	3.95619456902387	4.23052560569497	0.242110950295853	0.626736321530106	0.892916235446326
Merged-chr10-4107826-4	chr10	4107320	4108320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	105300.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	5.32605171827572	5.2976761931409	5.45392049595906	4.24299069712907	3.78327989864184	4.31281589396323	-3.16922634272507	5.37558786762103e-11	7.56839112164146e-09
Merged-chr4-149738112-4	chr4	149737621	149738621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177672)	promoter-TSS (NM_177672)	-53.0	NM_177672	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	5.4468918612987	4.85748416620222	4.87817359953543	5.01753229610715	4.57546172483112	4.82775345516168	-0.612896586061617	0.159962284960821	0.532501868349568
Merged-chr17-43079826-2	chr17	43079326	43080326	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	63271.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	2.48109197735615	2.59634697570042	2.55152243847844	2.16138942868215	2.07235443134562	2.23358140978221	-3.34860519080238	0.00194641946600264	1
Merged-chr3-9250725-4	chr3	9250242	9251242	+	857.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177660, exon 1 of 6)	5' UTR (NM_177660, exon 1 of 6)	175.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	6.38368042622122	5.51755953696459	5.11250521782668	5.44661609194008	4.61418415366986	4.65607876798202	-1.55842808090675	0.0793926405096526	0.372594787135367
Merged-chr17-50394135-4	chr17	50393652	50394652	+	895.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100532.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	5.24715256895581	4.84532761096639	5.10177716412081	5.85634257560611	5.60691198448139	5.3062276687006	1.06439447797531	0.00483860019387865	0.0598232161860705
Merged-chr4-97773798-2	chr4	97773298	97774298	+	894.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-3828.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.997614358366	5.023179027158	5.20780648664517	5.18271956185291	5.45845081535822	5.36394701986021	0.556270046557303	0.120511695617887	0.464237831896905
Merged-chr6-108836387-4	chr6	108835879	108836879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	7738.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	5.56085594851339	5.22229407199015	5.22333694144534	5.4491547225371	5.56402587576393	5.47722644119122	0.286483251418812	0.409222126568598	0.782609453389411
Merged-chr8-11635824-4	chr8	11635316	11636316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-59.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	7.2601352757637	7.60579908804018	7.58194027138085	7.24814587543836	7.41436629052409	7.46464838095073	-0.165378383482972	0.498623253374501	0.833992089521886
Merged-chr6-124282907-1	chr6	124282407	124283407	+	708.0	f0_balb.idr	Intergenic	Intergenic	-21744.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	3.91291462076597	3.81482511027864	3.82501569247297	3.95279763724887	3.75057868866832	4.42221745029981	0.627242662033583	0.253526012209681	0.650896916687683
Merged-chr19-29355050-4	chr19	29354530	29355530	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6841.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	4.33907628454312	4.27313224290724	4.38620138506271	4.5795291233473	4.05366407946936	4.41063481913401	0.0765227431910641	0.872139222091965	0.970261003150518
Merged-chr17-29601569-4	chr17	29601065	29602065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-5260.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	4.08077285654064	3.5956704012019	3.91548878812555	3.972101104829	4.00624856142058	3.98494084538827	0.329396867056881	0.537315076015219	0.854381181468677
Merged-chr14-26438338-3	chr14	26437869	26438869	+	689.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80822.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	6.0218957072718	6.01310201878541	5.87378553365747	5.67802576794101	6.00053224575278	5.86092194693942	-0.205059230229375	0.503930062525458	0.837380929077332
Merged-chr14-55581864-2	chr14	55581364	55582364	+	721.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011189)	TTS (NM_011189)	3370.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	3.36749912089546	3.46989234174901	3.76363407233075	3.34425963627475	3.29599741171579	3.53737711985156	-0.545977037984113	0.367548923557737	0.752479168156685
Merged-chr2-104589427-2	chr2	104588927	104589927	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1057.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	3.50920284224667	3.529791347766	3.58715618545716	3.72833783264352	3.52209684138314	3.85809967814318	0.561407439650038	0.317868105333129	0.711687905192095
Merged-chr11-3667704-4	chr11	3667207	3668207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9007.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	5.01818448684429	5.25944413789207	5.56758128365873	5.68349397965846	5.65716944954058	5.46097524146426	0.620030428613528	0.0838364665423813	0.383205048783699
Merged-chr17-36836297-4	chr17	36835883	36836883	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-763.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	6.95633568707957	7.00526107934066	6.67994747321412	7.45128807771514	7.59397538325508	7.09019125963543	0.762481781845637	0.00467290389256117	0.0584409780692195
Merged-chr9-109021965-3	chr9	109021464	109022464	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16603.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	5.32164345865722	5.33394131605759	5.41271780456786	5.14379468556107	5.32127856031869	5.29402349716542	-0.191964325273539	0.575883684708257	0.87142885060749
Merged-chr11-17002056-2	chr11	17001576	17002576	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	L1_Mus1|LINE|L1	6642.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.2538894885038	7.14908388989889	7.30754424332921	6.86358821671164	7.14943903055458	7.66340000703967	0.0412574115164195	0.888269014637455	0.97401529899353
Merged-chr9-70672145-2	chr9	70671645	70672645	+	690.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6837.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.19338254690307	4.16963404695934	4.11271683746094	4.01003776367712	3.97564703861926	4.35453111587527	-0.136359727126215	0.779846184958333	0.945949149660645
Merged-chr2-104027767-4	chr2	104027273	104028273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020593)	promoter-TSS (NM_020593)	-26.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	7.15598726068342	7.70197902026898	7.00179453397355	7.2711726153174	7.38755491568697	6.65464450106269	-0.265666562510482	0.416978167641208	0.787757906017933
Merged-chr17-53463363-4	chr17	53462855	53463855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172497)	promoter-TSS (NM_172497)	-34.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	4.13423912017537	3.96962749726418	3.87194766273553	3.99458153448815	3.85659921083582	4.22595092731002	0.0686724194531794	0.893188228337637	0.975210713351106
Merged-chr9-123058891-4	chr9	123058377	123059377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177911, intron 10 of 13)	L1M4|LINE|L1	24136.0	NM_177911	331046.0	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	3.01362292586506	2.87546881892791	3.11383472802714	3.16903547794912	3.07324685623738	2.88141893548888	0.227470191288433	0.740642822828047	0.934626588641999
Merged-chr7-98086225-4	chr7	98085725	98086725	+	817.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23023.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	4.77608050736011	4.6627310649026	4.9230772712211	5.17037565097099	5.19721521660681	4.95196312609009	0.733303597231839	0.0553347750688108	0.3024168120805
Merged-chr1-39367169-2	chr1	39366669	39367669	+	782.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	-682.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	4.14424070402005	3.91330392423923	4.29372003849733	4.00488764916042	3.94416611549011	3.84556065572398	-0.539421571517313	0.288161960444709	0.685538094827406
Merged-chr15-35371356-7	chr15	35370864	35371864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177151)	promoter-TSS (NM_177151)	-182.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	7.57888112094713	8.04215851328403	7.83638251068994	7.88415512888052	8.01474069847769	7.73023161739451	0.0737394842517046	0.763497003581666	0.941793063578371
Merged-chr18-67461012-4	chr18	67460515	67461515	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3834.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	2.56794723496462	2.46566187849233	2.32242090586593	2.57264903748376	2.62815067029058	2.66232957467706	0.944073237936164	0.249299906347551	1
Merged-chr8-111027770-4	chr8	111027290	111028290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190800)	promoter-TSS (NM_001190800)	-20.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	6.76767775123172	7.07406654124346	6.7723065006844	6.90295867273617	7.17897702255827	6.9065542430441	0.19082042308077	0.471527544212934	0.820066566307546
Merged-chr12-35384375-3	chr12	35383890	35384890	+	715.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150599.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	2.75388654677066	2.46286140053109	2.77523052763055	2.54542751652082	2.75892998333678	2.39499026166674	-0.503962159068911	0.554916554548881	1
Merged-chr3-79286803-4	chr3	79286303	79287303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58573.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	7.4718439761012	7.28899176025107	6.75239764552511	7.11481626562051	6.56658839066553	7.11391379027088	-0.396758853591972	0.208279865988482	0.599154748113039
Merged-chr13-45444896-4	chr13	45444391	45445391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55149.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.11992989377787	5.77342167978817	5.37415719387277	5.27761137463743	4.96282604558473	4.877771785977	-1.44774988224439	0.000250145335050488	0.0060138957061199
Merged-chr2-26380540-4	chr2	26379935	26380935	+	942.488098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290419, intron 1 of 23)	CpG	218.0	NM_172339	227644.0	Mm.207460	NM_172339	ENSMUSG00000036281	Snapc4	5730436L13Rik	small nuclear RNA activating complex, polypeptide 4	protein-coding	4.6474392424746	4.91196930597174	4.79863561317466	4.83968346973848	4.70508644203797	4.53622079627666	-0.199211827154762	0.627711627223666	0.893339236443994
Merged-chr9-106822673-7	chr9	106822099	106823099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015507, intron 1 of 22)	CpG	623.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	8.19177179987152	8.39779534967641	8.05370496256268	8.23489129859637	8.39020712057257	8.37611838034736	0.151462831677012	0.49050998267487	0.830053405840466
Merged-chr19-16773339-2	chr19	16772839	16773839	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	7594.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	4.65103442088251	4.53944731236829	4.79057992096087	5.36065470756881	5.33934084135797	5.24443217081402	1.4424089613459	0.000124944008737176	0.00342661208932201
Merged-chr3-84036251-2	chr3	84035751	84036751	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3910.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	3.03288940471942	3.16119475057783	2.92966187722225	3.25070134595015	3.31134950562814	3.36197903175759	1.09449302335229	0.0971701328744893	0.41563891294164
Merged-chr5-74948662-3	chr5	74948112	74949112	+	698.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045866)	promoter-TSS (NR_045866)	-582.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	3.05572530905045	3.02348381865682	3.24567861683629	2.88291827659826	2.50940431816768	2.79167699902612	-1.96396149161204	0.014372879184152	0.128985879783716
Merged-chr9-51030364-4	chr9	51029872	51030872	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21299.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	4.45582352782842	4.51752639405298	4.12164750503794	4.06303827289867	3.96343831441365	4.19134565499331	-0.878232184193081	0.0687075716463319	0.342942254787785
Merged-chr4-53198526-4	chr4	53198025	53199025	+	912.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-38630.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.77042860704377	3.60496381011024	3.5596441004715	4.02506171816735	3.47960521535918	3.51636121037731	0.167883616357791	0.778769786246104	0.945520893795831
Merged-chr5-120535744-2	chr5	120535244	120536244	+	571.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145853, exon 28 of 28)	3' UTR (NM_145853, exon 28 of 28)	24552.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	2.37263319921174	2.29845162929674	2.80219758011363	2.3859617110962	2.07099538115174	2.64444623323564	-0.618626541032764	0.688105472632797	1
Merged-chr3-89802204-2	chr3	89801704	89802704	+	646.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	28595.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	6.1890640547472	6.09138696041072	6.24214377093115	5.91700257430905	6.1309903818081	6.04949686302537	-0.22601205892476	0.433092443361749	0.797623786395605
Merged-chr10-41933060-4	chr10	41932604	41933604	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	45665.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	5.16774595487644	5.04633643934948	5.08284260752082	5.32127669405673	5.31176498585234	5.04010641317928	0.286375396305486	0.42751651490686	0.794365779350231
Merged-chr9-15306211-4	chr9	15305691	15306691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027261)	promoter-TSS (NM_027261)	-23.0	NM_029248	75316.0	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	7.23096959846427	7.43934971960337	7.04827620604086	7.28121011211965	7.46061202199344	7.02291256799311	0.0301017473981903	0.909131901092484	0.979384717565381
Merged-chr4-150156389-4	chr4	150155891	150156891	+	966.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085529, intron 4 of 11)	intron (NM_001085529, intron 4 of 11)	7419.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	3.39518128562632	2.93772620791134	3.07868086082897	3.30800817842781	3.08530023530571	3.3827368810778	0.433810434263158	0.526304345809807	0.849395505429032
Merged-chr12-51673397-3	chr12	51672894	51673894	+	785.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	RMER19B|LTR|ERVK	-17572.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	3.9298967115458	3.88483736425802	4.26008471118623	4.29222545006399	4.23585572760769	3.94931625930082	0.4253743425943	0.400795389395722	0.777012645872303
Merged-chr8-39298669-3	chr8	39298163	39299163	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 1 of 3)	intron (NR_044988, intron 1 of 3)	683.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	4.06895362168221	4.33145887802392	3.90543839837619	3.32548847397921	3.41982629352036	3.60017786676452	-2.3425406151861	8.29564397341999e-05	0.00242538279599554
Merged-chr6-72377138-3	chr6	72376635	72377635	+	924.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	3333.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	4.88485496884255	5.17088296169594	4.81092618053458	4.7348812979215	4.69179832284161	4.63229331923325	-0.642196202952142	0.110411310324769	0.443978483302541
Merged-chr11-116077631-4	chr11	116077150	116078150	+	984.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347642)	TTS (NM_001347642)	311.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	6.14772402116743	6.10906375836224	6.18536959339393	6.15064789671145	6.23202794767017	5.82213338355152	-0.0877296190735508	0.768613769784342	0.942871018290895
Merged-chr9-96535818-4	chr9	96535268	96536268	+	906.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-57093.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.89614327119346	5.80727109606319	5.74192785086903	5.30077832801363	5.83940200566131	5.62453429097961	0.120267390388074	0.779247746172536	0.945710994231145
Merged-chr18-34222867-4	chr18	34222360	34223360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1088.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	6.22284199861033	6.26478145502428	6.09458632652842	6.57437095669339	6.66255265528908	6.55246693240048	0.649038116354527	0.0157383267459949	0.137370679941335
Merged-chr2-5801443-4	chr2	5800957	5801957	+	950.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133837, intron 10 of 12)	intron (NM_133837, intron 10 of 12)	-43577.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	4.61321811930912	4.80841904809196	4.34795765718184	4.39418506006017	4.32315591905703	4.41685272987121	-0.599265822247563	0.178856207537602	0.560177193729651
Merged-chr19-6071469-2	chr19	6070969	6071969	+	737.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081041, exon 4 of 10)	exon (NM_001081041, exon 4 of 10)	-3619.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	2.44108897798215	2.56301093327708	2.68668603438399	2.35144417850568	2.42583849406844	2.5780059132995	-0.676516636806475	0.402968841882304	1
Merged-chr12-102460015-2	chr12	102459515	102460515	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9119.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.7873332929199	3.90262929654985	4.09847970051405	4.46006966256757	4.65604957450153	4.67500184156816	1.86536681863308	9.478310730815e-05	0.00271114224575337
Merged-chr12-110764743-4	chr12	110764245	110765245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	26813.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	6.33535154514189	6.1314520256927	6.3334488004663	6.3407733544809	6.18130124304961	6.2964841657062	0.00739071823999268	0.978916263356275	0.995160277495735
Merged-chr4-35165423-4	chr4	35164913	35165913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7929.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	5.3828883946767	5.55797789188314	5.61171185336108	5.44472668203355	5.21098224683774	5.95439700934093	0.0807151603893846	0.830806126865839	0.960370002015736
Merged-chr4-40852680-4	chr4	40852187	40853187	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1850.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	7.91341833462886	8.09432603659039	7.59811833567979	8.22859867208477	8.43815176196498	7.90981216477361	0.459495676149432	0.0783057792388061	0.369490438217674
Merged-chr14-70770314-1	chr14	70769814	70770814	+	642.0	f1_balb.idr	Intergenic	ID_B1|SINE|B4	-3686.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	2.19764110088774	1.93881835941141	2.20830691861699	2.26545328561635	2.05767270167801	2.348699707665	0.763648774176911	0.416399246227397	1
Merged-chr14-18234996-4	chr14	18234485	18235485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4121.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	7.92247958010116	7.9899735964235	7.82319989091394	7.96730209678214	8.33614578156159	7.87946523986587	0.239393167897256	0.315701542342524	0.709931731669551
Merged-chr4-150545958-1	chr4	150545458	150546458	+	671.0	f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	RMER19B|LTR|ERVK	106216.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.6436137961911	4.81172378516236	5.12640646729089	4.89927074380279	4.77306204935207	4.81435232271809	-0.0789026222408465	0.846311080238474	0.963987423586105
Merged-chr8-34929747-4	chr8	34929238	34930238	+	734.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 2 of 26)	MTD|LTR|ERVL-MaLR	35952.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.6364384773255	2.71983989069095	2.53733460813184	2.91712117800284	2.61113972992953	2.80729546618615	0.775536888614631	0.31418311367778	1
Merged-chr3-9946681-4	chr3	9946183	9947183	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65902.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	3.69797452744989	3.75481877548242	3.50503270161132	3.47838756834917	3.30610429663229	3.78476170390345	-0.467753962316898	0.434455720077953	0.798410009305253
Merged-chr4-32280558-4	chr4	32280083	32281083	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136852.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.827821335075	4.79330105395528	5.09100857073013	4.71792747618062	4.64314575145963	4.95947149854756	-0.300841461324359	0.456312506269707	0.811531402057786
Merged-chr2-152104350-2	chr2	152103850	152104850	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-1174.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	3.56109241376725	3.93170642093947	3.67491310804062	3.77508473789589	3.74266188011143	3.74566342379858	0.055700994398939	0.919284392115818	0.982011519166154
Merged-chr3-116450907-4	chr3	116450398	116451398	+	733.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26866.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	2.90125839436598	2.79329708559969	2.88324203433461	2.86933823687313	3.11177782995776	3.18816621945279	0.960307280558655	0.168803564521376	0.545438812408496
Merged-chr1-133610384-4	chr1	133609903	133610903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-123.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	6.43662045822022	6.52387710328061	6.74184956024825	6.58018429649187	6.07242390510622	6.26384546961354	-0.401799876056678	0.179478569245038	0.561049508546492
Merged-chr4-126155271-4	chr4	126154756	126155756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	7253.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	6.06143329741273	6.3942487890843	6.28636606595654	6.28193405522214	6.79975960190457	6.78579633912816	0.632292059285705	0.0380721438594191	0.241548375619866
Merged-chr13-49190210-4	chr13	49189713	49190713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	2666.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.50003287778353	8.39799335492407	8.17130276650245	8.37139546470092	8.5199474593542	7.80995631585726	-0.124337466084638	0.640472411061984	0.898483031109382
Merged-chr3-158077582-4	chr3	158077094	158078094	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40912.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	3.85222300214332	3.68632421242342	3.65086464686241	3.76935843773625	3.75111712418288	3.97351220322549	0.298546126782925	0.576506558217182	0.871585692229598
Merged-chr5-120515440-4	chr5	120514929	120515929	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	4237.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	8.48796564088902	8.49668001699422	8.41625010225419	8.63970641937037	8.87626491000658	8.44283691082066	0.280993801857113	0.20189069940678	0.59151131395209
Merged-chr7-28175530-4	chr7	28175011	28176011	+	972.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 4 of 8)	intron (NM_007991, intron 4 of 8)	-3972.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	4.92490344560547	5.35087502048707	5.31786778936927	5.12160868969082	5.00562348546489	5.05850689810834	-0.307946326905077	0.415867623395166	0.786747452594524
Merged-chr12-103445627-2	chr12	103445127	103446127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1947.0	NM_001281830	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	2.80504944659199	2.84330430689851	3.16661484783326	3.4366668646445	2.94389555595097	3.29506584920947	1.31786497008499	0.0680374714070991	0.341348322028453
Merged-chr6-97331051-2	chr6	97330551	97331551	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	MTEa|LTR|ERVL-MaLR	-78271.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.81769370161611	2.60899356008529	2.93141410981831	2.57939041719089	2.46581749395808	2.9469150049155	-0.601914073585041	0.454230188888624	0.810104016757399
Merged-chr2-165888532-2	chr2	165888032	165889032	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3694.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.33940073155433	5.38047364741385	5.53439290009462	5.3785455484484	5.55334129089852	5.39370856348333	0.0718827204737961	0.830406048512942	0.960294586886604
Merged-chr19-4066493-7	chr19	4066030	4067030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7083.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	6.81338786226416	6.73459878700029	6.8545238272664	6.61316776330241	6.62932017624309	6.49261741253665	-0.337233088662098	0.184146400502358	0.567763528958023
Merged-chr10-13964792-4	chr10	13964290	13965290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1285.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.64999754208269	8.67647390633195	8.24454479281371	8.5188977178376	8.83351344332622	8.16903264844915	0.000667218488883407	0.997991896015102	0.999579683478894
Merged-chr5-103756425-4	chr5	103755961	103756961	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	1888.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.04506738759107	3.71642467120674	3.79576129930315	3.98918151858456	3.81037704194612	4.06306409598618	0.272779661493202	0.604712240877042	0.883226183914895
Merged-chr4-95196773-2	chr4	95196273	95197273	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144551.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.07379921020842	3.22547125554649	2.93613815811356	3.51434368212291	2.91040905673214	3.48204262547736	0.993897564980415	0.173231827627257	0.551957215225209
Merged-chr14-30624442-4	chr14	30623941	30624941	+	815.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	1767.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.88686845803183	5.83149986608301	5.94573503287958	6.09353730954825	6.00851452379424	5.69928425210137	0.121770109426312	0.692499180840185	0.91870248759071
Merged-chr1-173428087-2	chr1	173427587	173428587	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	B2_Mm2|SINE|B2	7483.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	6.46046653436043	6.55316967630537	6.39341843843594	6.542496653109	6.6821037077067	6.37523029744517	0.119694124752592	0.658535559567932	0.905014667687917
Merged-chr12-8547453-4	chr12	8546941	8547941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177802, intron 2 of 6)	intron (NM_177802, intron 2 of 6)	-7875.0	NM_001286385	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	3.92787651726633	3.85001135505184	3.74444835940933	3.56243131607859	3.71906903188318	3.76247193738013	-0.538488653099681	0.315560916469971	0.709834518424648
Merged-chr9-43303194-4	chr9	43302710	43303710	+	966.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-7553.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	3.71530953040793	3.70495303045721	3.77845983571996	3.21656187239675	3.29987320100257	3.54335170679453	-1.41481481635011	0.0177611886934251	0.149310263568652
Merged-chr8-70833758-1	chr8	70833258	70834258	+	1000.0	f1_balb.idr	Intergenic	Intergenic	5962.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	7.92228838783348	8.1840165668547	7.95326170860887	7.59578349186775	7.60766639180281	7.59182990778436	-0.616317872100187	0.00545190451127491	0.0651223184860986
Merged-chr14-14673460-3	chr14	14672942	14673942	+	836.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29583.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.29287496499791	3.33218895757688	3.23314848294809	3.26047875496223	3.06689789855697	3.24730977911304	-0.41510463726397	0.508505518994108	0.839818423824339
Merged-chr2-152812228-2	chr2	152811728	152812728	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	PB1D7|SINE|Alu	16261.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	4.77448005676786	4.64372221465737	4.38209153942601	4.33041911843941	4.46505488023029	4.62156478698487	-0.360608810475788	0.413199541956838	0.784804663131881
Merged-chr5-72203288-4	chr5	72202780	72203780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153389)	promoter-TSS (NM_153389)	-49.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	7.16836440975528	7.30110988843865	7.2642858513438	7.27660813101445	7.21056310556154	7.17934112729216	-0.032141918098575	0.889358448381687	0.974240173857916
Merged-chr17-37046809-4	chr17	37046215	37047215	+	882.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019439, exon 2 of 23)	exon (NM_019439, exon 2 of 23)	749.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	4.50226442421595	4.52383107964484	4.35325001596148	4.45911537857985	4.2160678391929	4.0806346231542	-0.523523917355449	0.256609009893926	0.653682511929703
Merged-chr10-128174284-4	chr10	128173800	128174800	+	850.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 2 of 13)	intron (NM_001039080, intron 2 of 13)	2268.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	3.2428972696648	3.42516992588721	3.52648600920149	3.5859430157721	3.30086795302913	3.74656096911659	0.553375555098995	0.366321290313382	0.75135282621967
Merged-chr2-73554088-4	chr2	73553615	73554615	+	707.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24628.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.53103537765011	6.56070390548337	6.70879686962728	6.32315421171122	6.60860073589154	6.70606795128673	-0.0705156237979637	0.796631607839272	0.951457237542203
Merged-chr19-37135671-4	chr19	37135194	37136194	+	818.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	(T)n|Simple_repeat|Simple_repeat	-38149.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.39994797281097	3.5838140631353	3.5712741185685	3.38933498665148	3.41536313235669	3.42555758758748	-0.410088795504486	0.480867702975675	0.82484061161583
Merged-chr17-70987554-4	chr17	70987060	70988060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	2956.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.12933255071623	5.94749530998179	6.13383355938017	6.07299980751653	6.15538408671558	6.06369074881794	0.055488355465889	0.846912579182642	0.964139319360833
Merged-chr15-43483744-2	chr15	43483244	43484244	+	887.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025736, intron 1 of 10)	L1_Mus2|LINE|L1	6515.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	3.29390403898019	3.09064327619617	3.37577782874219	3.29008213637947	3.1154044109835	3.49825610168746	0.195445719610492	0.760886450560723	0.941046607439565
Merged-chr17-43017052-2	chr17	43016545	43017545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178589, exon 1 of 6)	exon (NM_178589, exon 1 of 6)	490.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.20676898564063	7.44563986964315	7.27158785620695	6.83129443982041	7.04827822248979	6.96439367840222	-0.542942404396007	0.026948672363854	0.195496523980084
Merged-chr11-11719365-3	chr11	11718861	11719861	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	29184.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.62866287693576	3.65086120446687	3.74088408073712	3.41932330279552	3.48213003344939	3.44193266695699	-0.805776699050827	0.155607948864825	0.525449746121077
Merged-chr7-102026490-2	chr7	102025988	102026988	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-8333.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	7.06014565004623	7.10520290114233	7.39691508430753	7.30083632872782	7.73622058195002	7.24245824184513	0.394554578800385	0.143882107945205	0.506350128485222
Merged-chr15-83129747-4	chr15	83129253	83130253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-6952.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	7.37967900718236	7.26089822444003	7.16637715087935	7.29050841256024	7.50952019130037	6.92055479515272	0.000761386494441147	0.997730590426006	0.999535504317229
Merged-chr17-5796079-4	chr17	5795565	5796565	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2592.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.03291449274009	3.91107912043678	4.31731585406557	4.1241904892924	3.98338453058075	3.97825410052346	-0.167059590087622	0.739213605015732	0.934189741955566
Merged-chr18-64517462-3	chr18	64517033	64518033	+	865.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-976.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	5.25233988685363	5.19183495809056	5.01822965891236	5.13287553379913	5.09087150981991	4.97273384670655	-0.195778812867631	0.590779755037072	0.877301111216348
Merged-chr3-8669352-2	chr3	8668852	8669852	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2314.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	2.50743554015071	2.56267245678464	2.53456156998521	2.53369567879447	2.45704855352755	2.66990609572317	0.0949443392804127	0.902706510231002	1
Merged-chr15-100761720-4	chr15	100761218	100762218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021530)	promoter-TSS (NM_021530)	-29.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	5.16744757258822	5.00178152725884	4.83580330551951	5.22825712988163	5.65112435967391	4.90409358144478	0.610226224405195	0.141601043316017	0.502273834608201
Merged-chr1-143919106-3	chr1	143918618	143919618	+	776.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85031.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.58934655353275	5.89371901617733	5.68154400663044	5.73272550333183	5.62760805638936	5.79525366927666	-0.0326501180445497	0.918570373433501	0.981830247255695
Merged-chr7-132610659-4	chr7	132610163	132611163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029609)	promoter-TSS (NM_029609)	20.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	7.05654917098911	7.13227837351307	6.91876499997103	7.04792856632675	6.89461197369264	6.76424979634172	-0.202451666652427	0.419550133988941	0.789091124470564
Merged-chr7-55855797-4	chr7	55855288	55856288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	13717.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.5768045892788	5.14444417245871	5.42158506670541	5.85160154944317	5.65753376878373	5.99425556995783	0.821098911751935	0.0178178013018012	0.149635003100553
Merged-chr12-78865794-1	chr12	78865294	78866294	+	590.0	f1_balb.idr	intron (NM_026114, intron 1 of 7)	intron (NM_026114, intron 1 of 7)	3722.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	3.53734889140752	3.52625578527214	3.60896525066947	3.6276675634512	3.40179710443959	3.77907317241654	0.166752293211977	0.771156804611569	0.943589366902852
Merged-chr11-6560642-2	chr11	6560142	6561142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	459.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	6.12425502829315	5.86409968084001	6.36772415977377	5.91525789580814	6.30223315711631	6.25934557547784	0.0798877198833047	0.802127722809071	0.953161751100363
Merged-chr11-78243507-2	chr11	78243044	78244044	+	584.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009297, intron 1 of 36)	intron (NM_009297, intron 1 of 36)	2159.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	3.24535882233384	2.93543365872466	3.12350717824269	3.15580067289265	3.01716993758459	3.13732140245713	-0.0244110884062334	0.970715371668508	0.993550070508075
Merged-chr19-6980058-4	chr19	6979581	6980581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360288)	promoter-TSS (NM_001360288)	5.0	NM_001360286	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	8.09395371570916	7.86807871333546	7.99506498954216	8.08229877638762	8.00421772554725	7.75980690066744	-0.0393467736609724	0.862016117054037	0.967996224966109
Merged-chr4-130802958-4	chr4	130802406	130803406	+	786.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	10369.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.88766186107942	7.61730899176546	7.62693544487796	8.10843406713838	8.32331769532109	7.70261156602679	0.512302670764721	0.0483659744819229	0.278939836497854
Merged-chr11-69682535-2	chr11	69682035	69683035	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-451.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	7.90402825275187	7.99726983134964	7.72844995365383	7.71214576658588	8.01686705774268	7.74024627332509	-0.0706556422481038	0.761947363104922	0.941355820818144
Merged-chr10-117432638-4	chr10	117432128	117433128	+	981.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14807.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	3.33310534062594	2.85956902906907	3.29775161970662	3.03060949352104	2.86912125229529	2.90139071023178	-1.10613230036964	0.124913281507717	0.472868997683394
Merged-chr1-105104911-2	chr1	105104411	105105411	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-251096.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	2.65659889236343	2.85407665849081	2.81593807234652	2.93938979521032	2.82199492773075	3.17794337390106	1.00073540761247	0.169662991920779	0.546653174510907
Merged-chr2-91080337-3	chr2	91079817	91080817	+	826.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10002.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	6.02227683352048	6.25299760056071	6.13019936636638	6.18932603177866	6.36872788744071	6.05632260411054	0.137368662374388	0.638511597437528	0.897576536084903
Merged-chr4-148038999-4	chr4	148038492	148039492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010840)	promoter-TSS (NM_010840)	-85.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	7.17535116828445	7.64471485817612	7.08634214835879	7.36759831723248	7.56346545939217	7.24471242858877	0.101710695683139	0.711407323143756	0.924661173262022
Merged-chr10-127471618-2	chr10	127471118	127472118	+	764.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359245, intron 11 of 23)	intron (NM_001359245, intron 11 of 23)	-30068.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	2.48159356345878	2.47032767918194	2.61763375308927	2.34125328266468	2.36548322864125	2.30737235312445	-1.16608998594879	0.161400520639339	1
Merged-chr3-136086625-4	chr3	136086138	136087138	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	239428.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.75413563227605	3.34892266647285	3.60719601064906	3.42350182180426	3.35748819451827	3.57301618880284	-0.488423711820175	0.415074262457455	0.786136540436176
Merged-chr9-36767806-4	chr9	36767307	36768307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-229.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	7.88163492888527	8.35202053423553	7.87470690022582	8.13108364200381	8.3850903765347	7.93016436305121	0.150968987652965	0.563592917972885	0.865992481769395
Merged-chr15-103366118-1	chr15	103365618	103366618	+	841.0	f0_balb.idr	intron (NM_001314041, intron 1 of 30)	CpG	673.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	6.24971000073514	6.32414768375151	6.82848177933681	6.46024821353066	6.53833466947075	6.69942202148617	0.136154352262376	0.651129160861392	0.902735752871093
Merged-chr14-10439126-2	chr14	10438626	10439626	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	14332.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	3.9504878371132	4.0003143526424	3.81601141216832	3.83645746328492	3.93962717327356	4.0345367116224	0.0191239509925782	0.969881160895299	0.993247105656042
Merged-chr7-127873210-4	chr7	127872702	127873702	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362192, intron 2 of 4)	intron (NM_001362192, intron 2 of 4)	2440.0	NM_001362192	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	4.26428538337127	4.43427248483196	4.38047052698328	4.40044421760509	4.37106323284849	4.53058676641835	0.178273284784471	0.684871247405145	0.916042498883771
Merged-chr9-20868741-4	chr9	20868250	20869250	+	958.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175687, exon 1 of 8)	5' UTR (NM_175687, exon 1 of 8)	108.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	6.40623315369783	6.59301221554032	6.36277384540663	6.3856209320214	5.95722350888119	6.06402308437333	-0.521563678492014	0.0787229970001895	0.370769408184285
Merged-chr6-89289431-4	chr6	89288908	89289908	+	992.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3683.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.13293820327814	3.86244304686901	3.99281572577664	4.35047149534	4.319888405422	4.4282600980507	1.01119185894419	0.034092369680457	0.225874504050598
Merged-chr7-120835905-2	chr7	120835406	120836406	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6925.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.7288421306027	5.79202599383424	5.90940689819562	6.07696427839016	6.09596661529558	5.9940076848439	0.445954650188241	0.129687191437137	0.48172009397354
Merged-chr11-84880699-4	chr11	84880206	84881206	+	984.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077636)	promoter-TSS (NM_001077636)	-421.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	6.56667925153788	6.32897137386999	6.37878739021227	6.33004705816056	6.31102727629787	6.08139317616874	-0.291952190026108	0.30040535242185	0.697298854445564
Merged-chr10-120189961-4	chr10	120189455	120190455	+	686.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	11642.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	4.34574560056109	4.42222523859663	4.1575800472503	4.87687583532163	4.64047058168427	4.557884157691	0.937618437004698	0.0351182864959311	0.229997826269456
Merged-chr8-104111354-3	chr8	104110851	104111851	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5478.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	7.16564389505529	7.26600080547848	7.29970888596903	7.54928426071775	7.5646770994655	7.55471803002883	0.462920876593724	0.0387523593309427	0.244077383635537
Merged-chr6-87525001-3	chr6	87524502	87525502	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	8257.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.46605605455617	5.80182162015135	5.38670328454464	5.17272713152489	5.06366716373534	5.29339417866749	-0.791836273531875	0.0266458766176532	0.194231283539351
Merged-chr11-60116143-3	chr11	60115626	60116626	+	959.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	PB1D10|SINE|Alu	11113.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	5.66679316153643	5.98608830843477	5.96397605411013	5.95249451884423	5.88299896559295	5.95583018988712	0.0900489885274903	0.769245890409932	0.943096029055944
Merged-chr5-103629634-4	chr5	103629150	103630150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029415)	promoter-TSS (NM_029415)	-247.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	4.15143386078087	4.26535653104964	4.08992112782533	3.83293602806831	3.97116529169974	3.91089245127643	-0.784456636660902	0.112293919867563	0.44763602190707
Merged-chr2-32496338-4	chr2	32495842	32496842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39017.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	7.86878283879692	7.44294097949132	7.30784092950768	7.77680856230721	7.64071840912746	7.30547930303288	0.0363111335065244	0.895277807654579	0.975665889379756
Merged-chr7-83802154-4	chr7	83801648	83802648	+	866.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7309.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	5.40867566144745	4.93289608369154	5.03810820513811	4.93811574958971	5.25636073688157	5.30076482613235	0.0525440221150454	0.893716689661016	0.975265071347118
Merged-chr7-121706757-4	chr7	121706187	121707187	+	783.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033173, exon 1 of 16)	exon (NM_001033173, exon 1 of 16)	566.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	3.40481194131862	3.15147185365913	3.29200952519952	3.34204979056876	2.77830669793903	3.47175920892026	-0.206948794409705	0.780843519787323	0.946078518476608
Merged-chr6-116153883-2	chr6	116153383	116154383	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	39491.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.04924206242901	4.88359387063031	4.98057340183151	5.1203638626528	5.02466050186116	5.21288364576469	0.303470786602259	0.410153346993375	0.783116615634315
Merged-chr6-88042929-2	chr6	88042429	88043429	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	B4|SINE|B4	2088.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.8423707385587	3.83092106229566	3.67087286896102	3.50027118376738	3.81153934191331	3.74144379331486	-0.3067339682953	0.578461584052701	0.872437129840066
Merged-chr13-116957833-4	chr13	116957335	116958335	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67681.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	4.17336174266953	4.35052386691178	4.38716750775604	4.69038502991654	4.67268111196297	4.16846915983744	0.607166721190773	0.196294047806368	0.584112516346026
Merged-chr16-93691394-2	chr16	93690850	93691850	+	800.0	f0_balb.idr|f1_balb.idr	TTS (NM_173047)	TTS (NM_173047)	8131.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	2.36396077297443	2.3673070363584	2.59115373573044	2.30952034015848	2.41602118749377	2.723046468818	0.291424119101631	0.727624698212961	1
Merged-chr8-115600020-4	chr8	115599512	115600512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106882.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.56982076978424	5.90569148971526	6.06216188830231	5.36016999524367	5.47752231206348	5.86308962934245	-0.51368104884958	0.146583352131056	0.510779662637501
Merged-chr9-100570121-4	chr9	100569609	100570609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	976.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	5.07747345590796	5.10660576886018	4.52633875972577	4.86142542577049	4.28595928143364	4.30224255555209	-0.974043175194699	0.0447044671247842	0.266573692168485
Merged-chr16-30058092-2	chr16	30057592	30058592	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-7265.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	2.63573864795033	2.48845123113904	2.97365284205652	2.76156386732149	2.51750914334776	2.87557377757466	0.0671125739325852	0.933227239294945	0.985356091252617
Merged-chr6-83795771-4	chr6	83795260	83796260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164187, intron 1 of 9)	intron (NM_001164187, intron 1 of 9)	602.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	7.99041180355626	8.03988390628249	7.97747588269551	7.66573572653442	7.97480526642269	7.53677031083896	-0.362993169833762	0.123879752829542	0.471070188601109
Merged-chr6-115317161-4	chr6	115316677	115317677	+	900.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43774.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.23728177535739	6.26306010330241	6.01822800911796	6.03153402137087	6.06504735483612	5.49676239823466	-0.476178084110155	0.148279012867445	0.513762236213799
Merged-chr13-45266420-4	chr13	45265909	45266909	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-123333.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	7.22047342571048	7.1564783389772	6.86177956185863	6.48130885324465	6.71798110419774	6.92020007918185	-0.589277833873254	0.0305018597396662	0.211183120753715
Merged-chr8-71284437-3	chr8	71283945	71284945	+	841.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	11731.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.7872190654857	5.05152515523606	5.21952026729445	4.83663631299547	4.9814649915566	5.15904754245509	-0.0636352018758765	0.871398708911346	0.970222087171093
Merged-chr12-55474829-1	chr12	55474329	55475329	+	656.333313	f0_balb.idr	Intergenic	Intergenic	17818.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	7.72904105232127	7.91117564635162	7.73895878540397	7.31189388970131	7.74670150167826	7.58631384951644	-0.33607888916334	0.166334442744739	0.541590933746988
Merged-chr17-17866760-4	chr17	17866255	17867255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-11567.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	7.97379331481882	7.9325696651538	7.55826314474212	7.67597975067731	7.99950498082169	7.58475545684727	-0.0969606315833146	0.703609970289719	0.922119521859599
Merged-chr4-135354231-2	chr4	135353731	135354731	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1017.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	6.92706500638123	7.14847668391787	7.44059002224543	7.04693102105011	7.43569900678474	7.21779191045914	0.0991601969642004	0.715836097475842	0.92647595514209
Merged-chr17-28429013-4	chr17	28428508	28429508	+	844.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 4 of 10)	intron (NM_010220, intron 4 of 10)	57141.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	5.49625393811343	5.29301288499845	5.56209998157714	5.5185237931918	5.57732074376713	5.45293557065009	0.140564796688215	0.67259968314539	0.910938885678047
Merged-chr2-120425028-4	chr2	120424539	120425539	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20923.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	6.96068447234923	7.2504237623852	6.73474388534065	6.87341023172386	7.1301717777607	7.07045976712414	0.0316665864340015	0.907276531341242	0.978875083701163
Merged-chr6-127251928-4	chr6	127251427	127252427	+	748.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56040.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	2.93230641587775	2.62219923396398	2.90435188208216	3.30488098075909	2.51363131223607	2.71964420082689	0.318837206810786	0.707133485573824	0.923220759150193
Merged-chr7-19665025-4	chr7	19664529	19665529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	1.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	5.9361782075075	6.0662122746653	6.39148798115114	6.4234303170103	6.56468242766794	6.27932488035131	0.501488176538678	0.0920537259055303	0.404179538026878
Merged-chr5-24750870-4	chr5	24750366	24751366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153076)	TTS (NM_153076)	6977.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	6.05450801278431	6.11679031121517	6.27181059214342	6.28330528613643	6.10067883439951	5.93837304249193	-0.0403161566106328	0.891094891812096	0.974741527770255
Merged-chr10-62492817-2	chr10	62492317	62493317	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6012.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	4.06251554017195	3.78641095054858	4.22216264779282	3.54051313117724	3.78366647950088	3.78314668552863	-1.01187734015217	0.0669152716507931	0.338131815511103
Merged-chr1-91066629-2	chr1	91066129	91067129	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	13185.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.59741724932478	3.17790919563661	3.41605387229669	3.0078514459593	3.03320137745125	2.95431893013524	-1.77692523854758	0.0104531499582388	0.103644626039697
Merged-chr7-80837932-4	chr7	80837431	80838431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24177.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	6.95840439526817	6.95238452360407	6.76811239513838	6.8668241870129	6.93212400232759	6.811128623899	-0.0420589360699526	0.86507619335319	0.96857203435794
Merged-chr6-83322133-4	chr6	83321628	83322628	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-3911.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	4.7155513460096	4.5644316404245	4.69915496860556	4.84460834022032	4.90638383822454	5.26939117058994	0.789306413975538	0.0519299625608048	0.290954462919605
Merged-chr2-18952243-3	chr2	18951743	18952743	+	864.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	45878.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.38716065322148	4.09055995616735	4.04076200288722	4.05647970411448	3.70833984173684	4.33545181243973	-0.387128618826162	0.471532362253849	0.820066566307546
Merged-chr10-128036095-3	chr10	128035594	128036594	+	953.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013608, intron 1 of 7)	CpG	748.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	8.57582046275238	8.98834646721627	8.04333588126213	8.50718903491676	8.72141156074916	8.20942894175113	-0.139354640519918	0.640665038788092	0.898535815546711
Merged-chr15-89074854-2	chr15	89074354	89075354	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040417, intron 1 of 3)	intron (NR_040417, intron 1 of 3)	1000.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	5.35951100969578	5.51342982439962	5.3369032588931	5.48837529603854	5.48038891270752	5.12812937889455	-0.0426154368861408	0.903261553085721	0.977795961230811
Merged-chr11-72538341-4	chr11	72537870	72538870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029932, exon 5 of 12)	exon (NM_029932, exon 5 of 12)	11876.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	5.92212495112209	5.30245642839498	5.70013696100988	5.76636471574191	6.01885033047215	5.83915291491908	0.389579386788229	0.264855156261612	0.662699378806683
Merged-chr7-127801685-2	chr7	127801185	127802185	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040684, intron 3 of 6)	intron (NM_001040684, intron 3 of 6)	1076.0	NM_001040684	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	3.74164278799478	3.57149319690969	3.79068262132014	3.66615475554034	3.39383274608575	3.95305002364966	-0.0677224300207027	0.907729366600605	0.979037236663477
Merged-chr9-108848374-4	chr9	108847885	108848885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 34 of 35)	intron (NM_001359572, intron 34 of 35)	-5658.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	4.80402068682237	4.31594996646057	4.71548570498818	5.32632800648049	5.22191571761389	4.78359751837635	1.13158133798246	0.00945734081585457	0.0967194161768231
Merged-chr4-32055365-4	chr4	32054917	32055917	+	962.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91310.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.88611163955131	4.94884069729326	4.59872228685584	4.88380657484646	4.66175081866519	4.43793580777349	-0.340302054106426	0.426884517309676	0.793904265858508
Merged-chr18-4908344-4	chr18	4907840	4908840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95854.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.62236367293144	6.00410909669015	6.14876367999076	5.59593981287808	5.45164933520756	5.79413311409421	-0.589098292992778	0.0836910591378564	0.38282729916423
Merged-chr17-29014579-1	chr17	29014079	29015079	+	632.0	f1_c57bl6.idr	Intergenic	Intergenic	-6584.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	2.75931586499119	2.6487779296393	2.89396089165999	2.65678779371323	2.7777383202662	3.18614677859811	0.591264891579865	0.437067822683458	0.799765712162923
Merged-chr13-105203978-2	chr13	105203461	105204461	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	89053.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	2.64196081545439	2.72900163325029	2.97758066214288	2.57251348736304	2.49315985651328	2.88027561848801	-0.709912667872624	0.368016456375748	0.752973180439492
Merged-chr8-83997036-4	chr8	83996535	83997535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	-637.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	6.35188798437208	6.31861305202871	6.35408773777872	6.17503747874215	5.97374749860609	6.21808393020169	-0.374293786232141	0.18173865267573	0.564278883982319
Merged-chr18-32856880-3	chr18	32856374	32857374	+	816.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-19587.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	5.64155272207459	5.95815698594711	5.94512093701133	5.59731735499805	5.70993796610064	6.02758543549257	-0.129194530749388	0.694762786770364	0.919217788511748
Merged-chr2-12318902-3	chr2	12318424	12319424	+	967.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16980.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	3.17239763693836	3.03301665798239	3.34737652686115	3.08146235740342	3.02491813894384	3.02261520841849	-0.622288761547402	0.347020633515248	0.735199858635661
Merged-chr1-87824624-4	chr1	87824125	87825125	+	903.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 9 of 15)	intron (NM_009118, intron 9 of 15)	20945.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	2.78631036622682	2.67946802569093	2.87271477400169	2.63749123478691	2.62898402814527	2.7662082407591	-0.554849893791563	0.452320972636484	0.809370729412253
Merged-chr1-130989535-2	chr1	130989035	130990035	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30310.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	3.60242861191573	3.66632538325064	3.60178592421946	3.97864403162649	3.76385868611197	3.67372173253161	0.628724908712575	0.248155550112916	0.645306800856162
Merged-chr4-57953046-4	chr4	57952564	57953564	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3347.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	7.29516263922504	7.18576743764233	6.90632391516546	7.48951854393589	7.81400167841554	7.56601918750543	0.717567404623097	0.00470668231474251	0.0587332966474347
Merged-chr19-6237193-2	chr19	6236693	6237693	+	810.474976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1353.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	2.53019556285915	2.4868384141497	2.31863700346014	2.4555482449868	2.32443405156019	2.58934202828157	0.0305073865810606	0.970690898131908	1
Merged-chr5-29290274-4	chr5	29289785	29290785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88105.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	5.26144442864179	5.41568874638615	5.33338629599535	5.27635801771601	5.28286998740027	5.02266304503583	-0.26040708523274	0.46129304765192	0.814992635038861
Merged-chr8-86880378-3	chr8	86879876	86880876	+	823.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	4882.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.50431046391383	4.27689600875964	4.3717459412588	4.62335701014685	4.21376387594899	4.72041660538104	0.349558988542984	0.45199774929074	0.809286173636239
Merged-chr7-97589645-1	chr7	97589145	97590145	+	586.0	f0_balb.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	9749.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	3.91842827591387	3.84536647703113	3.908752550784	4.0287887435254	3.81956938717785	3.97781915987372	0.155101354025029	0.759003859261119	0.940311236380535
Merged-chr13-24799530-2	chr13	24799030	24800030	+	938.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2127.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	6.65033451883145	6.81594590454497	6.92504692407393	7.00433801343035	7.16192163938127	6.91280654821764	0.370693326105562	0.145084446583979	0.508110048039049
Merged-chr7-13278733-4	chr7	13278234	13279234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010715)	promoter-TSS (NM_010715)	-13.0	NM_177312	321008.0	Mm.458832	NM_177312	ENSMUSG00000070814	Zswim9	6330408A02Rik	zinc finger SWIM-type containing 9	protein-coding	4.88184278111516	4.78243659523404	4.76552631385488	5.20577278556925	4.92513234990827	5.08879208160701	0.567559203145688	0.138570161944357	0.497458373815125
Merged-chr14-73106535-4	chr14	73106041	73107041	+	830.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35969.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	3.70121007918043	3.79554286832895	3.96750892843132	3.58760176297401	3.64382823764048	3.74718082609891	-0.538800616832185	0.318972799714445	0.71299004032015
Merged-chr9-118610242-4	chr9	118609713	118610713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	3504.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.97379009597616	8.17041570628484	7.83955132851705	8.08232964185866	8.23962759645374	7.920388129628	0.12178094133443	0.598373395413619	0.880780437003557
Merged-chr15-50826341-4	chr15	50825848	50826848	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	L1MEg|LINE|L1	62701.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.75753423290915	5.70370798829596	5.42393948513331	5.40360258993622	5.70663874981727	5.66167711742596	-0.0867300306713083	0.796104840995902	0.95140420098761
Merged-chr5-31049481-4	chr5	31048943	31049943	+	855.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177621)	promoter-TSS (NM_001177621)	-519.0	NM_001177622	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	6.16176428414422	6.51176403291739	6.42412519370947	6.33870105207148	6.48499758884575	6.20698197115837	-0.0267320813372503	0.926181646574757	0.983344890944257
Merged-chr7-118522243-4	chr7	118521729	118522729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304758, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	11127.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	5.28889041336384	5.1918113964927	5.3029174332048	5.2760663732391	5.46719855933831	5.06219640160068	0.0687547975220025	0.848454314985235	0.964356989789491
Merged-chr15-80219406-4	chr15	80218887	80219887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14693.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	6.20111903019342	6.50295160932965	6.38719695765219	6.21578809626545	6.37280798107738	5.92340853017708	-0.285436069076882	0.344182680947175	0.732955046099674
Merged-chr16-57227902-2	chr16	57227402	57228402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	3564.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	4.16571356117801	4.114740970096	4.27141073728353	4.73755350452263	4.76463795458428	4.60238146843723	1.35601146676692	0.00184259760447282	0.0289914270956693
Merged-chr17-34239892-4	chr17	34239410	34240410	+	993.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	1005.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	5.18092915374279	5.27181437025686	5.6925631134213	6.35633196005971	6.79363919944491	6.60981036982515	2.13382367605801	8.30691225670754e-11	1.12500147538813e-08
Merged-chr5-125475816-4	chr5	125475345	125476345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-28.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	4.74073940107989	4.97764451343348	4.97464776955859	5.11199052027696	4.94731014949732	4.73361186840959	0.103285380026217	0.793860740161335	0.950531747588938
Merged-chr10-99265501-4	chr10	99265000	99266000	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026268, intron 2 of 2)	intron (NM_026268, intron 2 of 2)	2269.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.33419131365662	7.42179784989695	6.86886670087015	7.21316615744758	7.47367283179954	6.83174447466005	-0.0422387389273437	0.887510793999253	0.973836995667151
Merged-chr3-95892767-1	chr3	95892267	95893267	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	-762.0	NM_001346514	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	4.18084206983833	4.16736552652025	4.55460680105356	4.2785767830692	4.35908528872922	4.24523568170062	-0.00665869523586228	0.988653689545792	0.997426973334006
Merged-chr4-43267135-4	chr4	43266615	43267615	+	826.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177195)	promoter-TSS (NM_177195)	-44.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.2707820277673	3.18165076161968	3.25877641404795	2.74858518643909	2.88175654590006	3.04573995965704	-1.62834355729184	0.0214763662862992	0.169320209015576
Merged-chr10-127635252-4	chr10	127634749	127635749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7737.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	6.93356399770326	6.59456302359322	6.96698588366572	6.52306944973326	6.86829594611462	6.77031645578178	-0.164767667404413	0.552170517523916	0.861546661145201
Merged-chr3-108910532-2	chr3	108910032	108911032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025845, intron 1 of 5)	intron (NM_025845, intron 1 of 5)	1197.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	7.00473990243061	7.48518214200502	6.97921012492714	7.12448407321256	7.43702631033999	6.99480226807921	0.0321451943857467	0.910503272945872	0.979856358918468
Merged-chr1-45927138-2	chr1	45926638	45927638	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1544.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	3.95039381960889	3.87372261034303	4.16300907289238	3.73252947087504	3.67498182937681	3.96143474335963	-0.652245859459165	0.215515204657971	0.608899282194137
Merged-chr8-66862557-4	chr8	66862079	66863079	+	854.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	2362.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	3.90192946591096	3.9024033570655	3.76543382605301	3.65304231886845	3.42219002604578	3.67805541465125	-0.954486057738595	0.0837964688535406	0.383093607157822
Merged-chr4-34959663-4	chr4	34959146	34960146	+	928.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48165.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	3.25673186020187	3.19941717816692	3.47315691974862	3.10546576771489	3.02287726959678	3.54246215860021	-0.30073811090297	0.652957552859558	0.903046151766902
Merged-chr8-109693369-4	chr8	109692875	109693875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-81.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	8.98955255728366	9.05330566838908	8.67686354875152	8.84910658909326	8.9329006842801	8.66203913701608	-0.134827760897498	0.540721003394919	0.856523315701507
Merged-chr11-100851143-2	chr11	100850643	100851643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	-558.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	6.75490299785508	6.17252848204892	6.24271033225378	6.66499497388095	6.42009905779293	6.02673761769382	-0.0315859370737812	0.925438508936885	0.983183533267328
Merged-chr8-70873613-7	chr8	70873098	70874098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-108.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	8.00499110504467	7.75382188749894	7.66367575070475	7.82071456223136	7.69539858778766	7.45961100374848	-0.212693896216608	0.379499975749585	0.761915582466374
Merged-chr9-7866663-2	chr9	7866163	7867163	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	6507.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	3.53829707809147	3.06760927054149	3.23370409476112	3.22058415200857	3.18906634460054	3.18795723770304	-0.404065725533061	0.538321205698547	0.855080856348593
Merged-chr15-58017590-2	chr15	58017090	58018090	+	684.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16704.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	4.10901951788794	4.23314142715531	3.99310258157196	4.2916452690765	4.14590996285838	4.3006095067083	0.33497194751309	0.479810492124923	0.824391932626821
Merged-chr3-97995013-4	chr3	97994489	97995489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18549.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	7.10544187928729	6.93695235441586	6.97207995057058	6.72378783234069	7.13522965172916	6.91845114402623	-0.0978713500640557	0.707954735368131	0.923606271223831
Merged-chr3-97876264-4	chr3	97875769	97876769	+	903.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	12438.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.44201514610837	3.14642020037155	3.19654387799616	3.35813552857304	3.18532624484209	3.26929521492195	-0.0020185066270312	0.997457246087305	0.999489539201078
Merged-chr4-132783981-2	chr4	132783500	132784500	+	604.75	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12364.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	5.63009597712754	5.71333535087763	5.78006701748188	5.94397759558506	6.23460886158065	5.59218475791568	0.464820872722379	0.167163343496963	0.542817176183676
Merged-chr12-111182072-4	chr12	111181575	111182575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130987, intron 1 of 3)	intron (NR_130987, intron 1 of 3)	2416.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	4.30497751362518	4.35796020885237	4.14645191668844	4.45523121567248	4.0610378959248	3.78282028975618	-0.384276803089321	0.467060406952453	0.817758655451976
Merged-chr1-152616235-4	chr1	152615748	152616748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	(TTTTG)n|Simple_repeat|Simple_repeat	8969.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.63777190088118	6.61146465465564	6.68142042643834	6.41425746404258	6.61617369154585	6.52315356886694	-0.187458372404895	0.471035804503605	0.819854144273437
Merged-chr4-132976297-5	chr4	132975808	132976808	+	795.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010208, intron 1 of 12)	(TC)n|Simple_repeat|Simple_repeat	2213.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.8662095091786	5.5629511547019	5.81253743958471	6.28537731478318	5.9709696866148	6.12832203259103	0.667024063781857	0.0326232355380425	0.21985212461727
Merged-chr2-4552866-2	chr2	4552366	4553366	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	(TAAA)n|Simple_repeat|Simple_repeat	-6888.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.14638791565714	3.1420198225644	3.04388626339522	2.96272234867108	2.83308110805515	3.33931050359126	-0.25428619747757	0.716818150995245	0.926852456574926
Merged-chr12-59218166-2	chr12	59217666	59218666	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	1317.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	5.59434934160173	5.78296302207149	5.61962685796678	6.07631308166182	6.00913931712053	5.81693562232854	0.549609758979085	0.0759447590569551	0.362689293121698
Merged-chr9-116082896-2	chr9	116082396	116083396	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92467.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	2.95602109978368	3.24407644775257	3.4869093243172	2.85042134684876	3.07652055436217	3.08909547971964	-1.03834630985441	0.147468637461722	0.512339011156061
Merged-chr15-101380596-2	chr15	101380096	101381096	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10471.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	3.76560518556926	3.82081178578901	4.33028968476747	3.22205785468368	3.35375025101118	3.36715150821227	-2.43558345267488	0.000171257474611717	0.0044144956466827
Merged-chr11-29497256-4	chr11	29496754	29497754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	17779.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	4.83488697894826	4.94159674687777	4.7331868672765	4.65162838357386	4.92183371552483	4.83827385445118	-0.0731433708862572	0.854058475079505	0.965896967163733
Merged-chr14-76073283-4	chr14	76072758	76073758	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37557.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	4.7953302855396	4.71978352778628	4.97676886030221	5.23502778308592	5.50174756277399	5.39613407682864	1.17768633776624	0.00140956562944923	0.0236085219193259
Merged-chr11-8664134-12	chr11	8663625	8664625	+	970.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	CpG	410.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.91557030337117	7.41592662627904	6.91064759250141	7.19284358576769	7.11916854947972	6.58746720327154	-0.162956721947316	0.594398318726884	0.879040735171041
Merged-chr10-110932006-4	chr10	110931504	110932504	+	683.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007792, exon 2 of 6)	exon (NM_007792, exon 2 of 6)	11828.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	2.77434332861421	2.63289283068656	3.09056391527079	2.58662632237156	2.92543111413871	2.75730132799264	-0.376045262130757	0.632076372581506	0.895435008062156
Merged-chr16-18419607-4	chr16	18419106	18420106	+	769.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-6112.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	4.66887811802227	4.83247245818823	5.03387137435176	4.71792680778009	4.50038830023278	4.71275042670364	-0.480948143274042	0.245416524770218	0.642506808909437
Merged-chr11-85574674-4	chr11	85574147	85575147	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 21 of 25)	intron (NM_138681, intron 21 of 25)	145097.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.14781525949046	4.3632402337711	4.13474450002334	3.88006094390652	4.32424279950355	4.15605845025025	-0.230306453802537	0.64507833992052	0.900402236225432
Merged-chr12-85947336-4	chr12	85946810	85947810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	122360.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	6.15364657226851	6.49709107092906	6.24175735368386	6.08915197456084	6.14480905738566	6.01739375415311	-0.371846899040946	0.202538341704362	0.59252027125208
Merged-chr17-7873885-4	chr17	7873370	7874370	+	877.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52130.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	4.19584869104114	4.15046929411051	3.97312874687308	4.22334325893456	3.92065856829219	3.99216441853735	-0.189654746072933	0.702241541628834	0.921841079228287
Merged-chr18-23753112-6	chr18	23752573	23753573	+	959.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_126066)	promoter-TSS (NR_126066)	-652.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.90145936966682	5.52684890703884	4.81218575935786	5.6550270905861	5.63525331536743	5.35599425223507	0.109524172095105	0.803227149318496	0.953422605427866
Merged-chr5-139405694-4	chr5	139405180	139406180	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-707.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	8.38445198374406	8.34547780886108	8.04057726236806	8.28892857632001	8.57364169921651	8.04355465211563	0.0805215744392394	0.744948496429399	0.936032341688524
Merged-chr11-53859302-4	chr11	53858803	53859803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-47.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	7.46656782396577	7.5652432168932	7.10411248455242	7.62838075012133	7.6905443777983	7.18856453050303	0.18744756183352	0.490899360373341	0.830208116813721
Merged-chr13-102663633-3	chr13	102663141	102664141	+	723.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29906.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.93884222236114	3.84304592375086	3.91168628877808	4.03200398244579	4.3587861557987	4.30816253828166	1.00294016594851	0.0422510701465521	0.257536227730885
Merged-chr12-70471557-4	chr12	70471071	70472071	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	18417.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.20230599551004	5.47532738800421	5.24092806743441	5.44089573918464	5.35037039847315	5.23870130790995	0.0635177919566949	0.85596817923801	0.966330645926821
Merged-chr17-31116101-2	chr17	31115601	31116601	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009593, exon 15 of 15)	3' UTR (NM_009593, exon 15 of 15)	13510.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	2.32178005566064	2.39189185194498	2.60418453953218	2.42067072450121	2.22179868411332	2.49359148844472	-0.384456219553842	0.648438082234078	1
Merged-chr1-88700504-7	chr1	88699988	88700988	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	1703.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	7.50136075343087	7.62854836404759	7.39617854918026	7.98292587240529	8.02187032753478	7.75868565167251	0.596605416623001	0.00908578457068239	0.0941833764242358
Merged-chr9-45489610-2	chr9	45489106	45490106	+	589.333374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	MTD|LTR|ERVL-MaLR	-58374.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.49866386288703	2.47574473314291	2.79785708308572	3.30281025882518	2.95706323224341	3.117543946181	3.19200235185138	0.000314882502949125	0.00725179720603122
Merged-chr11-20631444-4	chr11	20630944	20631944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-533.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	6.31097749281868	6.40413333773071	6.46087946804597	6.5202337546887	6.6105416065992	6.35059374636841	0.189955996545007	0.482087106569872	0.825329793705448
Merged-chr12-83939514-3	chr12	83939000	83940000	+	867.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11108.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	2.40989456177927	2.44528811202052	2.63002732897434	2.55263277994637	2.58591725875243	2.44925540797587	0.236025484629149	0.766552339540464	1
Merged-chr13-5863045-2	chr13	5862545	5863545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	1556.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	8.74592602429583	9.39618903765573	8.39598071799316	8.89844838817249	9.33891773921907	8.81319371019619	0.160887078861188	0.603281476696354	0.882544198306255
Merged-chr2-166826412-2	chr2	166825912	166826912	+	990.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	MIRb|SINE|MIR	20831.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	5.50057119033599	5.98679094176122	5.70307294979441	5.21993365444434	5.59688394961295	5.63300490279593	-0.470968062265223	0.187771320982933	0.573003120121314
Merged-chr6-31217624-4	chr6	31217052	31218052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	922.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	8.90331457518355	9.04490963611869	8.51221340369431	8.72555069708659	9.06166680910471	8.61058341418649	-0.0353332579282124	0.887570272966335	0.973836995667151
Merged-chr18-82914994-3	chr18	82914512	82915512	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	380.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	8.21882077900041	7.58732994371762	7.52482862252551	7.9493325973897	7.40071682772659	7.4437627069641	-0.28537274958594	0.349395151654162	0.737486917603295
Merged-chr5-100574572-4	chr5	100574072	100575072	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2367.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.22896222809823	4.33815346104028	4.51231180624802	4.99995989954212	5.03774341598285	4.49198847085156	1.24863938933898	0.00504015947124486	0.0615560823841689
Merged-chr4-119320550-4	chr4	119320048	119321048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028677)	promoter-TSS (NM_028677)	-25.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	5.50948218508444	5.61408900974007	5.99540684821362	6.02499595104115	5.6706111755573	5.8750530504635	0.270839096292204	0.422458712140422	0.791229309198916
Merged-chr11-95852410-5	chr11	95851888	95852888	+	908.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6429.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	6.51450453144329	5.77418738863166	6.38746180253634	6.68237366277246	6.51040863274504	6.24933334978536	0.38183924434313	0.25882014086089	0.656362387027306
Merged-chr2-52897239-4	chr2	52896779	52897779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39411.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.48819530577689	6.54702786442373	6.82081568888055	6.615520521225	6.73058449445814	6.63482181419647	0.0748779784802903	0.778558776003863	0.945520893795831
Merged-chr5-105056697-3	chr5	105056173	105057173	+	587.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3112.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	4.15868456450182	4.24984447664228	3.96664744998635	4.42563809419293	4.41894788444558	4.58450520627561	0.886446746239462	0.0575109538877124	0.309532435387372
Merged-chr4-59189338-4	chr4	59188787	59189787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-263.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	6.93744811843635	6.67231470234083	6.83003228376301	7.00248205545134	6.46694665130469	6.72040456738762	-0.111576407213793	0.694758958820655	0.919217788511748
Merged-chr4-139575448-4	chr4	139575031	139576031	+	975.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001205173, exon 1 of 9)	exon (NM_001205173, exon 1 of 9)	811.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	5.20853103859003	4.83606378300921	4.90721224214811	5.3350332313964	5.06005918944948	4.93521464674076	0.265332826444593	0.500930319084411	0.83533412964393
Merged-chr16-91796447-2	chr16	91795947	91796947	+	749.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 5 of 15)	ORR1B1|LTR|ERVL-MaLR	67076.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	2.62947671005267	2.8130495531996	3.05945676493288	2.59772576956298	2.48233062821104	2.90876440347082	-0.897752632443182	0.263573583118057	0.661476013554917
Merged-chr10-127104167-2	chr10	127103667	127104667	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	16993.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	3.4845685126308	3.59089294808204	3.74651618741984	3.24107080795177	3.56562914662076	3.39704843436968	-0.70081345080316	0.247924978355096	0.645087077480937
Merged-chr17-32544950-2	chr17	32544450	32545450	+	758.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 7 of 13)	exon (NM_024442, exon 7 of 13)	8393.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	3.38491576484589	3.36291031779782	4.18661614230316	3.87797428182786	3.40578224375718	3.61567956425835	-0.179533927930741	0.788423703948786	0.948954880993192
Merged-chr17-28730908-2	chr17	28730408	28731408	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	MTE-int|LTR|ERVL-MaLR	38340.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	2.70334392721723	2.55668587600349	3.12507579635777	2.61344324727	2.48012167385991	2.74735349412322	-1.04952971104037	0.195007637796139	0.582732825488997
Merged-chr3-88412787-2	chr3	88412287	88413287	+	853.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178696, exon 4 of 4)	exon (NM_178696, exon 4 of 4)	-2390.0	NM_025928	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	2.88369171595381	3.02536249112269	3.06431093199135	3.21785961236283	2.73059405047429	3.24964968663348	0.411429938914333	0.57214777838391	0.869807909725036
Merged-chr5-142797866-3	chr5	142797350	142798350	+	811.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	19537.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	4.99474444071943	4.97387947921709	4.68739159128852	4.82080122518249	4.72243465251085	5.08565054172768	-0.0620312827019359	0.877810685849824	0.971748379457442
Merged-chr1-165736787-2	chr1	165736287	165737287	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-26971.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.32035671620738	5.41936899791645	5.56628439418645	5.16274334921292	5.56032612982618	5.30739891258647	-0.132602131909987	0.709058212328397	0.923888590419226
Merged-chr5-16470505-3	chr5	16470005	16471005	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82990.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.51169602814571	6.58110015518667	6.08993116243338	6.20905491167894	6.3650477967288	6.54771300832189	-0.078223479933407	0.794224367822643	0.950642593866055
Merged-chr15-59046458-2	chr15	59045958	59046958	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	35568.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	2.77569337386457	2.81882137490799	2.74867030209047	2.78566556776031	2.76083046762973	2.88283851105652	0.126538458346052	0.858866677398619	0.96702230262239
Merged-chr13-5868336-2	chr13	5867836	5868836	+	765.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	6847.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.82552086837073	4.91826193252431	4.87915301886738	4.9008549615024	4.84572903815457	5.24116141505038	0.263061295865958	0.501238796647624	0.835523069455156
Merged-chr10-81290043-2	chr10	81289543	81290543	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1224.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	2.81977581911542	2.49369511478551	2.63183527420469	2.71827832109066	2.5166256596191	2.76847328471171	0.0644237292773683	0.934446168275729	1
Merged-chr12-117517440-4	chr12	117516938	117517938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 1 of 27)	MLT1B|LTR|ERVL-MaLR	959.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	6.17652324696005	6.16991302646155	6.45622194859842	7.12724743901166	7.16342611404411	6.57102069548012	1.15033033342586	0.000100341192868336	0.00284372955592252
Merged-chr6-115505138-4	chr6	115504625	115505625	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	5.69307694844355	5.56232750388479	5.5897824318747	5.48894991317351	5.50358937346547	5.38716313350054	-0.287688871139999	0.373789564020136	0.757546812967132
Merged-chr1-58693884-2	chr1	58693397	58694397	+	701.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175370, intron 1 of 14)	intron (NM_175370, intron 1 of 14)	-1452.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	3.10600760314825	3.08116202631922	3.23607047764297	3.23459614134988	2.88337589141419	3.07728369295623	-0.306366484856811	0.648474993993813	0.901830246360429
Merged-chr8-69012803-4	chr8	69012325	69013325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75911.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.34384411307459	6.0479100813286	6.02453644346888	7.09888824075762	7.06608609195457	6.92863506186086	1.40088783951529	3.11885854551687e-07	1.94246992406712e-05
Merged-chr15-88513421-2	chr15	88512921	88513921	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86881.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	4.07551710074186	3.95406845283251	4.10100142864248	3.88147402516961	4.18062877539921	4.12278607988592	0.0846914058986714	0.863895987881449	0.968269312109804
Merged-chr2-144166476-2	chr2	144165976	144166976	+	704.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22814.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	3.78702891720492	3.72920149513609	3.21049861004393	3.47434738537191	3.36686713896186	3.58415844666547	-0.470535836950817	0.460884769764859	0.814802506471053
Merged-chr5-36713349-4	chr5	36712846	36713846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17325.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	6.5538292189302	6.73357143209816	6.72971327411703	6.82254590990711	6.9773186250328	6.87813386908761	0.350149970154022	0.165751478956333	0.540878036824917
Merged-chr12-110851533-3	chr12	110851014	110852014	+	790.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1235.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	5.42797404343812	5.56185037170101	5.54250617550291	5.30395030525691	5.4056127761026	5.43313066640064	-0.251241964728218	0.447401822442787	0.806404141026781
Merged-chr7-88310947-1	chr7	88310447	88311447	+	700.0	f0_balb.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	32862.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.89678602170001	4.17591505707557	4.33683899516264	4.04415802715216	3.8592125279258	4.19200420057654	-0.323388909072441	0.526443494516643	0.849433518128594
Merged-chr18-39489949-4	chr18	39489451	39490451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2706.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	8.20704206761385	8.1983649691778	8.2758312563767	8.26141436490077	7.98499699901056	8.17319723819962	-0.118061413865814	0.580559021546503	0.872884157869997
Merged-chr16-94504401-4	chr16	94503927	94504927	+	798.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	22202.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	4.70010663901359	4.56961147776374	4.37700266967788	4.67607342909872	4.07978151793107	4.35362865776054	-0.425648266997114	0.374401324050757	0.758058822552447
Merged-chr10-41602794-3	chr10	41602273	41603273	+	706.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 29 of 47)	intron (NM_001358562, intron 29 of 47)	34757.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.11789604142592	2.88534898864231	3.01292221398797	3.02382128108446	2.89033898819491	3.30903747921838	0.314231553737388	0.650905126538061	0.902735752871093
Merged-chr10-94476932-4	chr10	94476433	94477433	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	RLTR20D|LTR|ERVK	-37924.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.1756969526644	5.45822983431669	5.92517820371469	5.73057636075214	6.06978330894481	5.8410524564248	0.0105555843424475	0.976452186325078	0.994723308989508
Merged-chr10-119240543-2	chr10	119240051	119241051	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-496.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	6.64251236631801	6.62642089091744	6.33971069118712	6.79246772751267	6.4673022925465	6.4766784472493	0.0591554531766079	0.833381373613402	0.961070491919313
Merged-chr9-119322359-4	chr9	119321888	119322888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	39.0	NR_045693	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	8.51895529018624	8.61782376190304	8.23820878391631	8.50476797498554	8.55052371954261	8.0207148344428	-0.118491309527565	0.636201817545712	0.897032166554798
Merged-chr9-104062947-4	chr9	104062312	104063312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	309.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	5.72331582449509	5.92969031239091	6.32030267331084	6.19863567633661	5.96903610432772	5.56359594583707	-0.106705594475987	0.764917163258343	0.942102569612401
Merged-chr1-82924801-4	chr1	82924293	82925293	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85333.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	3.6119567624764	3.56451676701476	3.67119547377516	3.26203169658128	3.52034265658166	3.1751025138503	-1.02849696927463	0.103173945982187	0.428296315983601
Merged-chr4-8803267-4	chr4	8802768	8803768	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51944.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.09050017228784	5.04458801490839	4.65119117319989	4.53056412531616	4.93408318088149	4.67644739638514	-0.487526344926683	0.254703983048812	0.651754308411513
Merged-chr7-45454868-12	chr7	45454371	45455371	+	993.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030678, exon 15 of 16)	exon (NM_030678, exon 15 of 16)	5015.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	3.60473668072811	2.87590442178015	3.44060798754248	3.16406426149101	2.96084907647987	3.29488267371528	-0.802572102128648	0.273534108387794	0.670839014699705
Merged-chr5-21138845-5	chr5	21138331	21139331	+	695.719971	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37448.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.34529752612806	4.21724928712607	4.81991099925391	4.5177055810341	4.54261989283217	4.81534539146861	0.37233216090899	0.424628738702156	0.792724150006259
Merged-chr11-80168788-4	chr11	80168330	80169330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	14668.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	7.88862949068694	7.40788217439641	7.711596913633	7.71381858427204	7.71051906219622	7.55405524180194	-0.0288627032734772	0.906775825671785	0.978838075044546
Merged-chr8-88361485-3	chr8	88361029	88362029	+	776.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	exon (NM_012047, exon 2 of 17)	exon (NM_012047, exon 2 of 17)	662.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	7.45191390236829	7.55884056707412	7.27188967146432	7.73918026832572	7.51349189114501	6.98133600554857	0.0315192851714807	0.911633771569415	0.980154516820379
Merged-chr18-74268148-4	chr18	74267654	74268654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013594)	promoter-TSS (NM_013594)	-21.0	NM_001357423	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	6.56063697907837	6.91857694514273	6.90550030965873	6.91570479167776	6.82010911937094	6.81959574172903	0.0781488170170489	0.76632437229818	0.942450536081276
Merged-chr9-48559980-3	chr9	48559487	48560487	+	866.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45136.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	5.43434458751631	5.57024045559076	5.58131230224233	4.86201712151082	4.89368913047014	5.2747433919761	-1.05342813502125	0.00387860417508284	0.0507677986786681
Merged-chr18-24215111-4	chr18	24214599	24215599	+	927.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	L1MDa|LINE|L1	9105.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	5.40465039993602	5.67562972746427	5.32508779458404	5.27708055526038	5.46027336434074	5.75071523049098	0.031905120706391	0.928862978418321	0.983906798062857
Merged-chr3-135470145-2	chr3	135469645	135470645	+	712.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15466.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	3.30936857086106	3.39231321523723	3.4894422656747	3.65178174727806	3.19291598707901	3.5066133171372	0.242682753653971	0.694808005968424	0.919217788511748
Merged-chr13-102669089-3	chr13	102668580	102669580	+	846.166626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24467.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	2.96359503060566	2.6862938180563	2.85247531090473	2.67651626494411	2.79332961133734	2.67498704777653	-0.619249613106473	0.406773391513043	0.781073132890231
Merged-chr1-37622143-4	chr1	37621619	37622619	+	897.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 7 of 9)	intron (NM_028096, intron 7 of 9)	-81103.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	2.89442560462028	2.75660177321192	2.77482460157127	2.97855650985108	2.64866354102787	2.91060858373533	0.194787115926232	0.790538695597657	0.949510125158813
Merged-chr4-116704013-4	chr4	116703513	116704513	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025962, intron 3 of 3)	B3|SINE|B2	4372.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	3.03054735246795	2.88751595952859	3.20254378004743	3.363565015655	3.13146850503456	3.15930555873326	0.795137508172155	0.233300715038562	0.629682827928185
Merged-chr11-68519559-4	chr11	68519055	68520055	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	16536.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.8893109450042	5.52248408876306	6.26967381604683	6.06340086354876	5.94999043171044	6.27362634346254	0.308919806756184	0.373173193909329	0.757045911810206
Merged-chr4-137374327-4	chr4	137373837	137374837	+	891.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-16578.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	7.0168367238463	6.60381377241158	6.75586123884315	7.32193826952621	7.33539197506698	6.81483848819163	0.582217972829529	0.0419677076659518	0.256410090275976
Merged-chr6-42348277-2	chr6	42347777	42348777	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1551.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	3.19441016285258	2.93046309408617	3.26821404052732	3.05926733480549	3.11804926973152	3.2845301016851	0.0821488809917835	0.90150687236201	0.977266678605068
Merged-chr4-16119605-4	chr4	16119103	16120103	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44040.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	3.06375470299642	2.95665759672797	3.01760743911223	3.01335637106143	3.01462251580107	2.77496106273023	-0.319600933786652	0.647624603526272	0.901510214793849
Merged-chr6-31213200-6	chr6	31212853	31213853	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	5121.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	3.82407104680908	3.70588837439411	3.9074433001315	3.70319234353391	4.06520159551046	3.87792281693883	0.27369804852409	0.606902252971465	0.884366969024721
Merged-chr7-110003232-4	chr7	110002686	110003686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 2 of 2)	intron (NR_037959, intron 2 of 2)	3460.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	6.37675028417438	6.43625509374328	6.41606649976391	6.10940410506294	6.51453512011593	6.67623684516918	0.067540936384629	0.818183177361616	0.956886944398959
Merged-chr3-137880397-4	chr3	137879914	137880914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	12739.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	6.54800991167901	6.45007935642237	6.13098707176588	6.29600829449464	6.4057606240404	6.39880148205377	-0.0523397104721776	0.853922424337759	0.96587152343171
Merged-chr7-100862075-3	chr7	100861582	100862582	+	633.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1331.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	4.34108714556838	3.53919877183225	4.2306953941815	4.72753304114639	4.0868436125179	4.10862432368556	0.682461318595954	0.262771793588652	0.660745316709973
Merged-chr13-22035732-4	chr13	22035221	22036221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	-78.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	5.48827677017728	5.45893722179836	5.55589014373857	5.616624532802	5.67707103834515	5.67262537567808	0.296881565893694	0.348724831293359	0.736649695871343
Merged-chr1-134091677-2	chr1	134091177	134092177	+	864.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12522.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.31456646307447	3.07302729795418	3.56511291630267	3.45104747353964	3.44627640298729	3.47921160230104	0.511883502695404	0.415331899927123	0.786359714415583
Merged-chr9-118810167-2	chr9	118809667	118810667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	98475.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.66937797183014	3.79541250200384	4.03177690756684	3.57062575977738	3.74597358515835	3.82316584332808	-0.38801086051223	0.479140710355842	0.8240495282712
Merged-chr18-12131485-4	chr18	12130984	12131984	+	977.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	2634.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	5.18252658202027	5.16053850443352	5.11593667637775	5.38375144720207	5.42529748348711	5.43559106539082	0.517815676037858	0.1286910195452	0.479799601167289
Merged-chr9-21718225-2	chr9	21717725	21718725	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5351.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	5.96780101221919	5.81308043857541	6.04728170111691	6.18384872114594	6.1732084049263	6.01759074046478	0.332430712991033	0.255919549564789	0.652867953552546
Merged-chr11-69097627-4	chr11	69097125	69098125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.83768597227828	8.63576005862972	8.33050502756983	8.44126949615253	8.54390080904568	8.24577619538841	-0.283789780682828	0.231978919838362	0.628173065670086
Merged-chr2-129379330-1	chr2	129378830	129379830	+	579.0	f1_balb.idr	Intergenic	Intergenic	-8191.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.1589760593154	5.19689891057349	5.53764428136888	5.3106202766674	5.25150491211384	5.54637332869894	0.138295031223596	0.701281931286863	0.921225520800058
Merged-chr17-67261158-3	chr17	67260663	67261663	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	L1MA5|LINE|L1	93296.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.0944067056636	4.93874347478935	5.11226635349067	5.80714150519069	5.95555878173488	5.59162381563219	1.47085455789877	1.85876152010149e-05	0.00068526286470804
Merged-chr12-108794455-5	chr12	108793900	108794900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 1 of 4)	CpG-3499	1089.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	8.74501639279788	8.47312928449412	8.21343714504321	8.47998266281242	8.10969897226139	8.30700558263724	-0.273290264356915	0.267977158860183	0.665158787855372
Merged-chr1-180314849-4	chr1	180314361	180315361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15615.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	4.99471783508844	4.74269981020586	4.78147471490527	4.81015790052452	4.74913580916877	4.55699838452239	-0.29903917463167	0.461250160826454	0.814992635038861
Merged-chr13-41603579-4	chr13	41603059	41604059	+	941.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2657.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	7.91972697977015	8.13980759878175	7.64805782083207	8.04216031463507	8.41334896808288	8.01946529509637	0.356053430141126	0.162035243241696	0.535322342557572
Merged-chr2-165983154-4	chr2	165982648	165983648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-9489.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	8.16190677364427	8.07059915529998	8.00867657224276	8.03807541730575	8.36884808145838	7.98142593119716	0.0912573122759591	0.69078510875962	0.917977377427794
Merged-chr13-55201335-2	chr13	55200835	55201835	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8447.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	5.71833200006036	5.73914080345341	5.66712555402815	5.44164160977127	5.70107129671108	5.87836022786833	-0.0561604169436628	0.862804360597054	0.96809238390547
Merged-chr11-4187707-2	chr11	4187207	4188207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	874.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	6.73604836084794	6.73828109437756	5.91556493427813	6.37672781561023	6.42388912204956	6.15394054423632	-0.327776294884632	0.336397098063949	0.726414494996627
Merged-chr8-61919304-2	chr8	61918804	61919804	+	935.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8783.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	4.55711910519623	4.1267352300461	4.44229665482822	4.04237216250827	4.39039755223993	4.24761476638616	-0.386428145642666	0.427199591476789	0.794138281262721
Merged-chr6-130954354-4	chr6	130953833	130954833	+	901.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	293029.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	3.95227629591033	4.39397034558827	4.12549643635954	3.51029329934621	3.52303743041936	3.85978334766978	-1.74387887331854	0.00196043190877954	0.0304903959375192
Merged-chr2-60923283-4	chr2	60922776	60923776	+	961.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	39928.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.2244244291853	3.1667536617329	2.97562798556462	3.1078641588486	3.12202021614558	3.28590092991414	0.164328304646428	0.802116262716965	0.953161751100363
Merged-chr7-19320941-2	chr7	19320441	19321441	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10896.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.77703244878498	5.3971367764838	4.95692748801948	5.64436069373516	5.79146665664619	5.39551010992934	0.363396556052495	0.363660089728682	0.749292510552301
Merged-chr7-110062071-1	chr7	110061571	110062571	+	1000.0	f0_balb.idr	intron (NM_009281, intron 1 of 15)	CpG	369.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	7.8884567798405	8.29409863573712	7.85533037316418	7.92794177833845	8.10930428421965	7.98270513956195	-0.0336835612840583	0.888452087642331	0.974034827576098
Merged-chr17-56930228-4	chr17	56929716	56930716	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5172.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	3.59648483490902	3.52887547586491	3.32929368412485	3.42487262850073	3.42678264082162	3.77480089016797	0.179738005693712	0.764647259662954	0.941983059468209
Merged-chr13-48873748-6	chr13	48873224	48874224	+	707.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2839.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	5.27013443166704	5.38147612246506	5.25096582094749	5.07372298892412	4.75747943231607	5.28342469127422	-0.546604980557033	0.151192737471991	0.518506648409409
Merged-chr2-3752523-4	chr2	3752025	3753025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	39067.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.09998863351029	4.2543800221783	3.90455894164647	3.96908357835156	4.14776993733198	4.38695130890563	0.202044177830131	0.689261674109125	0.917319650405699
Merged-chr13-49214639-3	chr13	49214175	49215175	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	1351.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	3.86762819096485	3.74895769299772	3.85040967012087	3.92790139299286	3.6209580913497	3.60046850764376	-0.311645602272515	0.566986474332985	0.867700458659165
Merged-chr1-144241164-4	chr1	144240703	144241703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	7901.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	2.92847260001729	2.66418827000903	2.92842045524674	2.82817164606562	2.52398139185548	2.88307855778906	-0.481841127019563	0.531005248144293	0.851371761844442
Merged-chr16-91876513-2	chr16	91876013	91877013	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	55117.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.45427950846628	3.05563368822769	3.40346708041237	3.46795035214655	3.19332160630088	3.30690440437087	0.0449401285554911	0.944591057818754	0.98781571177728
Merged-chr2-174041701-4	chr2	174041200	174042200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-35351.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	3.55816293254881	3.80369716942841	3.6925134042006	3.55405580287372	3.6326733620518	3.90679953083756	0.0328961212102973	0.953151588534168	0.989359300570295
Merged-chr10-111131897-3	chr10	111131395	111132395	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	-32907.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.71247354042845	3.73069215312039	3.60588240683165	3.74326769050914	3.51916128091159	3.56647993364305	-0.261824165758929	0.636529751013504	0.897197812898308
Merged-chr10-25292332-3	chr10	25291871	25292871	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	6792.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.55713088347003	3.37184692911808	3.43882578066544	3.02639968620499	2.84188410008094	3.11087993670712	-2.15215190945431	0.00194279566135184	0.030255688075943
Merged-chr7-28796034-4	chr7	28795495	28796495	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177158, exon 8 of 12)	exon (NM_177158, exon 8 of 12)	7026.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	6.46145687946329	6.70209838213401	6.92567216485163	6.81333506073638	7.05847181613632	7.51862253561128	0.696827474092064	0.0223873840044953	0.173866851619007
Merged-chr4-141731570-1	chr4	141731070	141732070	+	557.0	f0_balb.idr	Intergenic	Intergenic	-8151.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.92330476547899	4.7589392504353	5.08888363685884	4.12492812023687	4.13251597435037	4.42727796460005	-1.75273269800997	9.07043410836791e-05	0.00261515135581801
Merged-chr18-39649953-2	chr18	39649453	39650453	+	812.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123544.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.88431631004141	7.2110887491	7.12487162371841	6.9819037603641	7.21235170129073	6.80657447257512	-0.0890245704356232	0.737866233279836	0.933858424870961
Merged-chr1-135731583-2	chr1	135731083	135732083	+	788.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	2416.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.83774189753239	3.84737452885111	3.65558652584188	4.50459436671909	4.30214967239792	4.06327482714979	1.51451815439988	0.00374676083304585	0.0495369091142398
Merged-chr11-106627923-4	chr11	106627443	106628443	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-15013.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	2.56118685525364	2.41962770131153	2.74038447110373	2.55365911403836	2.44364659271026	2.69396254033097	-0.0700436885699037	0.929745118447202	1
Merged-chr11-120549702-4	chr11	120549204	120550204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033231)	promoter-TSS (NM_001033231)	23.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	8.2678106833746	7.94082231238169	7.64606153559009	7.88834655263037	7.81905381806344	7.70263269187675	-0.25270432778945	0.320647218866846	0.714486534537161
Merged-chr11-53788496-3	chr11	53787991	53788991	+	849.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	18018.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.21006665477761	3.0115913506315	3.40782098468847	4.14188504390892	3.78204483574728	3.70824694345669	2.64206409448323	6.55577386168807e-05	0.00198001027761648
Merged-chr14-70111044-4	chr14	70110595	70111595	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	11002.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	5.76432908663573	5.88048012264927	5.85958282019369	6.64769945367094	6.71692837341017	6.40662328540977	1.28968712346746	5.77023717718466e-06	0.000249807437585422
Merged-chr6-86733398-4	chr6	86732916	86733916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011818)	promoter-TSS (NM_011818)	-38.0	NM_011818	23885.0	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	6.51096440711939	6.65118897377513	6.49430514286773	6.37182156982713	6.47918868962422	6.12843511132592	-0.340742311233803	0.221197624585237	0.615719180190507
Merged-chr5-146261150-4	chr5	146260661	146261661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 2 of 12)	LSU-rRNA_Hsa|rRNA|rRNA	29911.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	5.12968066456675	5.10652703826452	5.20721378626687	4.87968785825091	4.72213201624131	5.82703137364876	0.181532218458244	0.700011395321278	0.920792136552364
Merged-chr2-91947893-4	chr2	91947383	91948383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2465.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.35914859976454	7.20647823482552	6.93939619938947	6.81359222161413	6.65889230035593	6.50334009589467	-0.794743471964084	0.00296957571144287	0.0417950703311466
Merged-chr17-56266075-4	chr17	56265585	56266585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	9292.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	7.52750939338954	7.58552009069706	7.04662591533916	7.42795938463901	7.75399270852625	7.26258142083638	0.130207302300923	0.641449055084811	0.89901620332997
Merged-chr11-20220544-3	chr11	20220046	20221046	+	901.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 3 of 5)	intron (NM_008996, intron 3 of 5)	19134.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.54299569884548	4.35456432780171	4.5467663815644	4.62661774454126	5.01565820845398	4.43775226808624	0.599876035869124	0.182301418994834	0.56505974204673
Merged-chr1-64615880-6	chr1	64615426	64616426	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025964, intron 1 of 2)	intron (NM_025964, intron 1 of 2)	1242.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	7.32335359349326	7.50832820244237	6.83112540903232	7.48482268686629	7.95522721844953	7.51835542368286	0.606675493656617	0.0390676897212474	0.245142822245998
Merged-chr11-109413783-4	chr11	109413265	109414265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12181.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	5.33456293668972	5.09753419986595	4.59590210842698	4.657636846184	4.34465938984364	4.38106842601884	-1.3515634333436	0.00309030219682687	0.0430608074733204
Merged-chr2-12317576-4	chr2	12317073	12318073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15629.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	5.03450598272772	5.10099661251859	5.34601371138743	4.82089110628615	4.96797312690933	5.20055975482145	-0.339179585287633	0.374829068297157	0.758128885281656
Merged-chr13-107758501-4	chr13	107758009	107759009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71112.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	6.9996570504138	6.82119025055174	6.51116653877752	6.59972602153287	6.57073367556291	6.41828186080009	-0.420728961217705	0.130261563861411	0.482496625969562
Merged-chr8-117298383-4	chr8	117297877	117298877	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	41358.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.59529570715183	4.5862760916813	4.75107537645349	4.36647398584354	4.22676417921999	4.74357016058601	-0.475591277734132	0.289906368338319	0.687626804551505
Merged-chr6-134533077-1	chr6	134532577	134533577	+	809.0	f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	33836.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	5.18205965968017	5.27488948056362	5.25685620644669	5.48626246127937	5.73505647102054	5.56248297234636	0.712297984774651	0.0340855988359259	0.225855200906569
Merged-chr11-87212507-4	chr11	87212003	87213003	+	853.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	85428.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	4.33483233253495	4.67454968090225	4.47939042093737	4.32887984656268	4.26742794018203	4.81040099173076	-0.0655573444417138	0.889408606933719	0.974240173857916
Merged-chr10-67536179-4	chr10	67535683	67536683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1686.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	5.69144861297023	5.48567892969309	5.22647946192322	5.59001341846227	5.49920664901036	5.42349190167681	0.0275884959620572	0.93650307121225	0.986037792257163
Merged-chr2-19580740-4	chr2	19580234	19581234	+	946.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26824.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	3.7980387577067	3.57379442565654	3.61257472550737	3.82405855686706	3.91460353572047	4.12654705096786	0.922274976294111	0.0878125841110854	0.393175284123913
Merged-chr1-97630739-3	chr1	97630238	97631238	+	846.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30938.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.96042697305317	5.02751754791312	4.34685023180706	5.04265071919414	4.88227444463695	4.47021325798477	0.00875356065273869	0.985424931853815	0.996904015210561
Merged-chr17-70728930-4	chr17	70728455	70729455	+	936.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	117822.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	3.71234786112995	3.74836785912626	3.63141516162603	3.4955035788253	3.42411706096384	3.64899739639153	-0.646670355157217	0.248402585804325	0.645525542946571
Merged-chr3-131701142-4	chr3	131700648	131701648	+	831.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135116.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	3.10488113815196	3.05146622352504	2.90660055416672	3.16378306050726	2.98870871149219	3.16261147727561	0.338247499338101	0.613832217521847	0.887317203673931
Merged-chr8-75089096-4	chr8	75088567	75089567	+	975.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4551.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.03235973609143	7.18607500655997	7.16651106899083	7.03317922627004	7.50183669490861	7.19987164710681	0.208119029375013	0.421052378570954	0.790122251976347
Merged-chr7-123240231-4	chr7	123239703	123240703	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146198, intron 5 of 16)	intron (NM_146198, intron 5 of 16)	25337.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	4.21657062992867	4.76061924250602	4.84477783446552	4.3537175834804	4.40725889100969	4.90867888683165	-0.142322241307908	0.772178912954261	0.943680976839558
Merged-chr7-81074859-4	chr7	81074357	81075357	+	887.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 3 of 13)	intron (NM_054085, intron 3 of 13)	17257.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	3.42095980829628	2.97157417534165	3.12975668506633	3.23939367869941	2.94509244771993	2.95387692193804	-0.588995847630125	0.403155560926398	0.77859505427791
Merged-chr4-16214152-4	chr4	16213642	16214642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 3 of 6)	MTD|LTR|ERVL-MaLR	50032.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	4.90096471131928	4.40783949670215	4.74381801413879	4.71525653260325	4.35890310753455	4.77187362246659	-0.190224474147292	0.673757521662447	0.91163657550036
Merged-chr7-68692139-2	chr7	68691639	68692639	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57099.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	4.35907102022637	4.13938140506678	3.94236654522408	4.23470812954814	4.40007895557805	4.01432947014934	0.189832231567872	0.706149277045764	0.922878730238431
Merged-chr14-20846657-2	chr14	20846157	20847157	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	9995.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.86761666450165	5.86720292838055	5.96230361946579	6.04351813015573	6.36394561264513	6.17769504603029	0.537655996535044	0.0684013869563356	0.34214262734372
Merged-chr10-81184013-2	chr10	81183513	81184513	+	776.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007828)	promoter-TSS (NM_007828)	95.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	4.05669314674549	3.93305284779907	4.33162398562133	4.28431379884543	4.42290302890919	4.52000284549187	0.827258913132548	0.0815195622404513	0.377653234075095
Merged-chr2-167928685-2	chr2	167928185	167929185	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.03126761007631	2.95434081484305	3.29526007862557	3.25298437355252	3.21051607342774	3.31170554337772	0.700485776609581	0.28225456779832	0.680177416378801
Merged-chr3-9341733-3	chr3	9341247	9342247	+	674.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61331.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	5.07125330816404	4.9430841184059	4.93264725489885	3.75595623608642	3.8540576781158	4.12881789928646	-2.96742233099151	2.93444737839722e-09	2.98495718168308e-07
Merged-chr9-45313485-4	chr9	45312969	45313969	+	652.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5631.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	2.91357331556197	2.70889661122346	2.98353179012643	3.06072561528622	3.04867992055831	2.87267974368227	0.625421024656921	0.377237076855205	0.759641409718252
Merged-chr4-136149743-8	chr4	136149233	136150233	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	5911.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.8057441909308	3.64072500687044	3.5728516642253	4.01037383479932	3.44321906474882	3.58862446917088	0.0840841680447078	0.88742057012122	0.973836995667151
Merged-chr10-77610338-4	chr10	77609846	77610846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301673, intron 2 of 3)	L1MC5|LINE|L1	-3363.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	6.11585262545498	6.09414144983766	5.64433877313353	5.64230288724915	5.88361724561349	5.81505177236313	-0.347196834652623	0.287370461604668	0.684650023087306
Merged-chr4-139741937-3	chr4	139741448	139742448	+	973.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 8 of 8)	MTD|LTR|ERVL-MaLR	88410.0	NM_031873	83770.0	Mm.190612	NM_031873	ENSMUSG00000028738	Tas1r2	Gpr71|T1r2|TR2	taste receptor, type 1, member 2	protein-coding	3.70879490639437	3.603988671375	4.09752851901099	5.83972740293224	5.5615825952195	5.69005181578107	5.84801789531102	3.92343171258505e-16	1.3434605182748e-13
Merged-chr19-8212649-4	chr19	8212152	8213152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172776, intron 2 of 9)	L1_Mus2|LINE|L1	6248.0	NM_172776	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	3.74359433505846	3.31910127540219	3.90590015317263	3.43687096000368	3.72426454286121	3.78578944442264	-0.0602061848785182	0.92163280948827	0.982542868764899
Merged-chr7-13036137-2	chr7	13035637	13036637	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145578, intron 4 of 5)	intron (NM_145578, intron 4 of 5)	-1360.0	NM_001360731	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	3.75146824263034	3.31199276223465	3.770884689543	3.39549812670249	3.5459615854122	3.79152009275036	-0.145457710990101	0.811627030191622	0.955304895434479
Merged-chr15-5577953-2	chr15	5577453	5578453	+	680.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 2 of 4)	MLT1A|LTR|ERVL-MaLR	81635.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	2.79240348007405	2.79534110632317	3.19985620597638	3.12101318422592	3.26726003185331	3.15931620006902	1.1473637202952	0.105639683750002	0.433764288115161
Merged-chr9-107602644-1	chr9	107602144	107603144	+	782.0	f1_c57bl6.idr	intron (NM_001042779, intron 9 of 19)	L2b|LINE|L2	2758.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	3.56714320769496	3.35984702765856	3.25781719375352	3.17007511448697	3.37207614752589	3.33026556578299	-0.432331623815888	0.488768802551557	0.829423271678195
Merged-chr2-129414785-1	chr2	129414285	129415285	+	748.0	f1_balb.idr	Intergenic	Intergenic	-43646.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.8466124246401	4.78549426158682	4.64905483816296	3.7896267224127	3.67038697177598	3.81875405039312	-3.01461130909762	8.44217632931074e-09	7.79641074372129e-07
Merged-chr4-41352678-2	chr4	41352178	41353178	+	675.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	715.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.16318902608055	5.53877013575653	5.66668993756598	5.23177094486637	5.55229385320467	5.7524703650869	0.110369017490211	0.766661802927104	0.942536715432526
Merged-chr14-73168789-4	chr14	73168305	73169305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	26020.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.82662804562682	7.73571030562177	7.36100012505217	7.56662685444992	7.63992312209985	7.14480881578859	-0.270234106231948	0.315601319360416	0.709860478133366
Merged-chr13-98927221-2	chr13	98926721	98927721	+	851.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-837.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	7.08273081386722	7.29299214999698	6.49454740975557	6.99845214324626	6.99160385483414	6.78600297686064	-0.121787086651315	0.687820658972432	0.917193226920892
Merged-chr13-37830906-3	chr13	37830405	37831405	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	3512.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.13734862146635	3.96527888979616	4.44776803000192	4.14537202711301	4.00314112634659	4.43519590338996	0.0232002929163413	0.963460477298574	0.991116725160803
Merged-chr1-95662836-2	chr1	95662336	95663336	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	4758.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.05483022174457	3.42097240999195	3.16785904899723	3.15770268004825	3.21676432127172	2.92703070885886	-0.486846065356437	0.481332368500646	0.825039216343972
Merged-chr10-58254779-2	chr10	58254279	58255279	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-747.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	4.67284138304144	4.78453658780471	4.35020678705817	4.43956359145252	4.5929394621688	4.51031105053512	-0.262351132358627	0.54941975900626	0.860273914502926
Merged-chr10-53505712-4	chr10	53505207	53506207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	13282.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	4.28964660953631	4.30614518120395	4.9007000658138	4.75401770654387	4.62565333268904	5.15077443196545	0.785670670769454	0.0983274104365567	0.418091224263121
Merged-chr5-65823834-2	chr5	65823334	65824334	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 18 of 19)	intron (NM_001024917, intron 18 of 19)	-39735.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	2.75060261498271	2.73183385482216	2.45146678440136	2.7393224324206	2.64981777912052	2.78957220141122	0.370138335405563	0.639578337725574	1
Merged-chr16-57551753-2	chr16	57551253	57552253	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	2511.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.80646275896401	6.66703270803473	6.61503214261746	6.95782621091386	7.03963171809628	6.86533059952287	0.400354657872623	0.110742086717519	0.444764337850723
Merged-chr18-25904903-3	chr18	25904414	25905414	+	777.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150757.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.55493322772327	2.61785380336098	2.92388720149046	2.80136474226035	2.37776231798523	2.63636720802024	-0.481367030309947	0.558504308583039	0.864722646301276
Merged-chr10-15300325-4	chr10	15299815	15300815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-491462.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.07508247230594	4.10409051483069	4.36255398565062	4.22806607564167	4.06086551428069	3.91785649643511	-0.282506361540032	0.566621977925562	0.867510884287005
Merged-chr4-129702208-2	chr4	129701694	129702694	+	685.0	f0_c57.idr|f1_c57bl6.idr	TTS (NR_045036)	TTS (NR_045036)	-5349.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	4.92721320505256	4.760109626085	4.62960766802876	5.22041990168114	4.84383830014612	5.21030392411922	0.674036718504922	0.095609034193876	0.412262865585533
Merged-chr13-97559855-4	chr13	97559330	97560330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-170.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	6.92075698668752	6.80672690736341	6.85242685891985	6.87982727662954	6.92768228759748	6.82149163910413	0.0303047990476749	0.901315766149869	0.977176770690314
Merged-chr4-155529502-4	chr4	155528999	155529999	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 3 of 11)	B1_Mur4|SINE|Alu	-32882.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	4.08235426447016	4.13869308847541	4.50121446910046	4.37241578906922	4.05926695290324	4.13980477840286	-0.130371204165706	0.790640598357419	0.949549282047892
Merged-chr15-84842674-4	chr15	84842172	84843172	+	715.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	12427.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	2.94534739111919	3.05061062493389	2.76053919423136	3.08443291482848	3.05921209658624	3.47430870661988	1.26358465069288	0.0845465999557687	0.384991708483533
Merged-chr7-90068074-4	chr7	90067578	90068578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38919.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.90062538095947	5.73787302963772	5.74973979590169	5.24184039979281	5.46376803302585	5.51412323274685	-0.728948298828451	0.0257522451394223	0.190277471635802
Merged-chr14-69823698-4	chr14	69823166	69824166	+	702.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16741.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	4.3578806110583	4.23228245961828	4.43980499853465	4.33036927328302	4.07426074444023	3.99838027282279	-0.536676471880683	0.259520963077515	0.657131020381498
Merged-chr6-71415646-3	chr6	71415158	71416158	+	882.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	24979.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	4.51690817180063	4.17311824243127	4.23085372743656	4.38967450884558	4.40648774997842	4.5594232024589	0.33267134598711	0.46606875826331	0.817324750104145
Merged-chr1-131246053-4	chr1	131245554	131246554	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	-876.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	4.67865305808283	4.45453040876389	4.26336635559783	4.93021666169433	4.75454308862967	4.88718372044391	0.866754661964091	0.0446033053264825	0.266218479994689
Merged-chr7-28601189-3	chr7	28600686	28601686	+	726.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3002.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	2.4056670252733	2.49286675150224	2.66960665287318	2.22140295511946	2.29571956556172	2.43712990378311	-1.33815208378877	0.11893056353396	1
Merged-chr17-5885743-3	chr17	5885289	5886289	+	768.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	44409.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	3.58907182349524	3.74445487341638	3.552846734937	3.69378871647383	3.42608508536942	3.45411608710346	-0.372605449257013	0.517365634303395	0.844527792582824
Merged-chr10-118892717-3	chr10	118892213	118893213	+	796.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23810.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.57377883117284	3.46036092979629	3.25647641466599	3.39470881470248	3.31647566073221	3.4995313036531	-0.162284125592137	0.788675257995858	0.94895503373255
Merged-chr15-60826379-2	chr15	60825879	60826879	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030696, intron 1 of 2)	intron (NR_030696, intron 1 of 2)	-1299.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	2.44590024706382	2.44493534121997	2.4407740147825	2.6387121163662	2.45855339523306	2.6419833154261	0.81567086246105	0.302409649357625	1
Merged-chr3-105804687-1	chr3	105804187	105805187	+	587.0	f1_balb.idr	Intergenic	MER3|DNA|hAT-Charlie	-3306.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.44583092065271	4.23681942544271	3.89379049552782	4.23713772982955	4.23083034203682	4.07048550955363	-0.103319002707145	0.838088552479412	0.962389040652308
Merged-chr17-63864891-2	chr17	63864391	63865391	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	910.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	6.81760499958034	6.68412636310282	6.46248221078207	7.14132935430901	7.45828564098408	6.91322654367834	0.811531857637523	0.0040228190965364	0.0521306231715622
Merged-chr16-32176271-2	chr16	32175771	32176771	+	734.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3529.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	5.47763066390658	5.21217074321036	5.5017698739199	5.58477391379793	5.90678005578866	5.82690759546087	0.721000581818126	0.0317768869084414	0.216150804189643
Merged-chr2-84355457-3	chr2	84354952	84355952	+	808.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018782, intron 9 of 15)	MTB_Mm|LTR|ERVL-MaLR	69814.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.89086852532212	3.83522454045202	3.85013350645708	3.563608881246	3.5003326497161	3.96598074071432	-0.585270901699742	0.294873474954693	0.691754267220111
Merged-chr10-128271016-2	chr10	128270516	128271516	+	955.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133997)	TTS (NM_133997)	518.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	6.69168408981353	7.0308059074765	6.66605561602215	6.66792902730158	7.23155697173716	6.92534275622975	0.241355849301563	0.408270854331636	0.781982251625038
Merged-chr18-62073871-4	chr18	62073368	62074368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	106113.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	6.57033793142535	6.16333178356545	6.32343327825692	6.17151979762355	6.14871333246792	6.3641642018613	-0.233158955559164	0.426698571814952	0.793849313274879
Merged-chr17-83275375-2	chr17	83274875	83275875	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60092.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.24777020528299	6.16087791697129	6.56087869778742	6.49700884017185	6.46270178232551	6.69838650308492	0.370454924499135	0.193426037578261	0.580571161345211
Merged-chr1-180885871-3	chr1	180885372	180886372	+	703.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7236.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	2.90573584605253	2.96595591880723	3.19186823559288	3.07952109146287	2.96567649432465	3.56894138027781	0.860704762089519	0.224105029337007	0.618957456138137
Merged-chr10-116565094-4	chr10	116564677	116565677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	15359.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	6.78860757565733	6.84210453728724	6.48085164232388	7.24631325932638	7.493454706866	6.90107925971458	0.798658540379593	0.00516106636043259	0.0625188542318933
Merged-chr2-72261956-2	chr2	72261456	72262456	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23681.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.60103340566309	4.52885282236535	4.25171254717663	5.10988390356624	5.02733453061685	4.85842836593408	1.20987250954035	0.00431190242678219	0.0550367812743814
Merged-chr19-6400299-11	chr19	6399697	6400697	+	890.841614	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011242)	promoter-TSS (NM_011242)	-386.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	5.17540552451758	4.92660473330972	5.58062485270936	5.37744145080954	5.2541740280796	5.30747279199592	0.142887678105471	0.70968345922249	0.924019923873518
Merged-chr15-72873256-4	chr15	72872753	72873753	+	791.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164642, intron 16 of 16)	L1MB5|LINE|L1	-62929.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.93536068919044	4.8517483107182	5.16117605723393	5.16413725879142	5.04246501389867	4.91470898664181	0.150134017314335	0.692816701826231	0.918779359389855
Merged-chr4-105496347-3	chr4	105495845	105496845	+	830.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	338998.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.78694604940077	2.83954209495596	2.76731997436367	2.90913996277932	3.09948589290225	2.96594819637242	0.968842567081277	0.168811776411964	0.545438812408496
Merged-chr5-134509178-4	chr5	134508678	134509678	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	MIR3|SINE|MIR	43256.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	4.02324746416244	4.10610661531595	3.97349761453471	3.88904198796233	4.10418355273597	3.94243122127239	-0.149291034793135	0.763900726593432	0.941838906550437
Merged-chr19-32712775-4	chr19	32712288	32713288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	-490.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	7.62000464614806	7.66422282296155	7.29097123314632	7.57113773380334	7.74433314128998	7.36003380657856	0.047662514106976	0.849679435115869	0.964686793473289
Merged-chr6-54057191-4	chr6	54056654	54057654	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	MIR3|SINE|MIR	17222.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.15804746929318	3.84690697783963	3.47816395807656	3.77404375770809	3.79339346120333	3.67249385311657	-0.366872320132893	0.533930221562273	0.852777001391163
Merged-chr7-19920617-4	chr7	19920100	19921100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027514, intron 1 of 7)	intron (NM_027514, intron 1 of 7)	543.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	6.49150032839877	6.4466628717504	6.63549735083305	6.66458561196349	6.53906832953637	6.24944510416524	-0.0272437698558529	0.922066210400421	0.982542868764899
Merged-chr18-32833118-3	chr18	32832584	32833584	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045381, exon 2 of 5)	non-coding (NR_045381, exon 2 of 5)	-4141.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	4.23663613687172	4.54476719600576	4.40168381083326	4.0413011446359	4.16551805963474	4.05434912054228	-0.843599336850302	0.0751329671980027	0.360971414897593
Merged-chr11-106305983-4	chr11	106305488	106306488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4092.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	5.32071038773001	5.18319953045774	5.14627481188604	5.41557150280657	5.18076741648575	5.40101283007272	0.214718091497372	0.542051841503399	0.857034750433211
Merged-chr1-23921961-4	chr1	23921428	23922428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	CpG	453.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	7.09026226142916	6.74085380239999	6.78490945503556	7.47351022296004	7.07453295843338	6.89009568069893	0.439083409299556	0.124436851361251	0.472038237086681
Merged-chr15-58418714-2	chr15	58418214	58419214	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	3246.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.44986504144718	3.64851660660536	3.73962774452235	3.65608262021565	3.68243283075592	3.54615552055767	0.069570054747708	0.90145342565873	0.977241855233699
Merged-chr16-14125459-3	chr16	14124954	14125954	+	994.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	33820.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	4.29532684145847	4.22058147211593	3.72873269836915	3.93062577124975	3.69985988414281	3.91148456398675	-0.802733378581703	0.141513525341241	0.502183459290427
Merged-chr17-83217803-2	chr17	83217303	83218303	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	2520.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	2.21202300887191	2.2498991030359	2.42751117396181	2.20743176920208	2.17804192676411	2.37620217229675	-0.293937162288301	0.732088052903004	1
Merged-chr12-73537890-4	chr12	73537388	73538388	+	919.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8507.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	3.87103331966406	3.56629875792571	3.77943551550858	3.90839432852065	4.16059451569599	4.00081371969398	0.897849742573365	0.0901486914060088	0.399227862819265
Merged-chr13-30729538-5	chr13	30729062	30730062	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19671.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	4.107622587632	4.31807912581519	4.11195772810893	3.81316645615481	3.97150877118624	4.08628068168934	-0.666979830219426	0.178329156884121	0.559402033136986
Merged-chr6-96105788-3	chr6	96105281	96106281	+	859.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-7373.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	2.78537462872481	2.97257446293851	3.08843094545011	2.73577712005913	2.6014384251026	2.93331583548774	-0.98976108021865	0.185911415183375	0.570234334804567
Merged-chr6-86488625-2	chr6	86488125	86489125	+	573.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040293)	promoter-TSS (NR_040293)	-398.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	5.94371495433394	6.38174282461908	6.17135974795253	5.87251735303581	5.95973331279962	6.12714219057775	-0.33478427972147	0.277668944907028	0.674855968126621
Merged-chr3-133544340-4	chr3	133543823	133544823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	67.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	8.51564444390969	8.43288052682494	8.14138946557249	8.49836162203074	8.27034827564417	8.38815846410557	0.0125471610584916	0.95527052699741	0.989753950496214
Merged-chr6-86397118-4	chr6	86396617	86397617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	33.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	7.99978310875064	8.04605121771297	8.17052146309843	8.03942614442275	8.22361534602216	7.73528651630542	-0.0674984829222586	0.775672591935463	0.944750767901947
Merged-chr17-50504318-4	chr17	50503828	50504828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5219.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.05217075412703	5.65927275478906	5.69904127685656	5.89785147042093	5.93304908067604	5.62016437540374	0.0213315192699764	0.9483892286167	0.988111778104233
Merged-chr4-123026342-4	chr4	123025858	123026858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 1 of 9)	intron (NR_151450, intron 1 of 9)	9765.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	4.93412732600522	4.93418846579787	4.81038631576476	4.79630910799743	4.73804284935649	5.08719202724697	-0.0620156615240485	0.8747150805336	0.970754540400126
Merged-chr14-31495093-4	chr14	31494567	31495567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359850)	promoter-TSS (NM_001359850)	-12.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	8.32754230292332	8.47466083890797	8.01203123032943	8.24348844631157	8.4773527132824	7.73434898009235	-0.130137470917222	0.639578323166996	0.898199312621371
Merged-chr16-4419904-4	chr16	4419320	4420320	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291910, exon 1 of 12)	5' UTR (NM_001291910, exon 1 of 12)	678.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	5.68918927273117	5.54650762075214	5.61731837851057	5.47257807317406	5.03378424035447	4.96606116541546	-0.85331127380912	0.0199278980198626	0.161049003344671
Merged-chr19-12444156-2	chr19	12443656	12444656	+	827.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER110-int|LTR|ERV1	16251.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	5.15584617985354	5.0341499822439	4.88107058542687	5.03367695413723	5.55266173741441	5.16805664387849	0.509189213201751	0.192301786432857	0.579367163874643
Merged-chr10-100016176-1	chr10	100015676	100016676	+	1000.0	f0_balb.idr	intron (NM_001347156, intron 1 of 8)	CpG	355.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	5.39305558447961	5.1712950309115	4.97112247636078	4.98569804683863	4.92389842988147	5.10805919445774	-0.416208102562987	0.269960979693917	0.666963156307406
Merged-chr2-93470392-4	chr2	93469884	93470884	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040532)	TTS (NR_040532)	-7434.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	2.77824596355932	2.96687107399152	3.1464844699714	2.89122620864178	2.87741777745482	3.27050318227424	0.236202278366703	0.742320505243018	0.935192080236037
Merged-chr5-43894279-4	chr5	43893804	43894804	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	25495.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.69879814320384	3.87529771750787	3.72645563656776	3.62534045794505	3.55344929762849	3.94246457336618	-0.210903049850444	0.703528308366545	0.922108924938678
Merged-chr2-125791570-4	chr2	125791025	125792025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8655.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	6.10348702769315	5.97641440916433	6.50564476047166	6.4340773402817	6.3413970264173	6.46232462611269	0.347025071601154	0.246543131837543	0.643668567473197
Merged-chr11-115671046-2	chr11	115670562	115671562	+	569.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28472.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.32225225219882	5.44057563498844	5.12403007974516	5.62908758376394	5.30785624645333	5.35810047793046	0.248202815833328	0.485291883848768	0.827394620754206
Merged-chr19-4122071-4	chr19	4121556	4122556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-481.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	8.01143742115609	7.98778935551297	7.93965784769555	8.02958377712417	8.41097071480685	8.07757732595782	0.296147021705671	0.193233063344858	0.580409562689281
Merged-chr9-50965534-3	chr9	50965048	50966048	+	942.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	43525.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	4.67436840314776	4.83608098596556	5.17763556970159	5.19102876473201	4.94641596821309	5.08050256234332	0.374437999617917	0.347673597836206	0.735701120697733
Merged-chr4-3081728-2	chr4	3081228	3082228	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-90355.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	2.3760598761794	2.50791510843644	2.60159580677851	2.32237405425856	2.36928029693173	2.67444592088968	-0.218496364106219	0.791952272299807	1
Merged-chr1-86059604-4	chr1	86059113	86060113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5006.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	3.90232178622991	4.10148827482311	3.94528120058598	4.00010302275338	3.74632858270762	4.108914676942	-0.113377658419714	0.825951491014016	0.959026704031345
Merged-chr9-96526182-4	chr9	96525676	96526676	+	731.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-47501.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	2.66434078404809	2.6325686232827	2.68883294187514	3.24918567382292	3.02140035251077	3.08114465606132	2.45082495727151	0.00141214771848462	0.0236374949426008
Merged-chr10-25362809-2	chr10	25362309	25363309	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	3011.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.60345343236889	5.74130291687554	5.49851108735627	6.08699794105888	5.84272477132243	5.40192765225023	0.352121492638048	0.317277335696412	0.711216102754224
Merged-chr11-115285503-2	chr11	115285003	115286003	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 3 of 5)	intron (NM_178035, intron 3 of 5)	-8534.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	4.18669710369839	3.87984433895322	4.15148761963332	4.19860120461372	4.02394866486813	4.30719992491658	0.277238062649995	0.573648445189214	0.870251558775855
Merged-chr10-20534904-2	chr10	20534404	20535404	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	B4|SINE|B4	13424.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.15516357683379	4.13783890409488	4.23421666321171	4.00291697540758	4.16308734702249	4.38472190364995	0.0353473758952241	0.940930045154003	0.986888338850358
Merged-chr18-34954753-4	chr18	34954249	34955249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-398.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	8.58056623543424	8.59630269286347	8.10063810700045	8.4061341489726	8.56536721399613	7.75442835286611	-0.214326015557916	0.462765721745183	0.815435922849644
Merged-chr7-101366560-4	chr7	101366047	101367047	+	876.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-11575.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.93236899122094	4.95479027264266	5.41501586053508	5.28119548261635	4.593361170954	4.87136163713936	-0.351136515285984	0.425129962400025	0.792966014601688
Merged-chr19-36925150-2	chr19	36924650	36925650	+	613.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-929.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	5.54971062801252	5.60145815654455	5.59137550007376	6.0860066599102	6.3953937145929	6.48069715972678	1.30704061552901	2.05605499187793e-05	0.000747401589183829
Merged-chr1-24688366-1	chr1	24687866	24688866	+	683.0	f0_balb.idr	intron (NM_026719, intron 2 of 15)	ORR1A2-int|LTR|ERVL-MaLR	9448.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.95046412987497	4.99147235655866	4.66394646489556	4.67376836982491	4.94743966217441	5.25834494263556	0.194043100620202	0.643164525976536	0.899662669201574
Merged-chr11-43410480-4	chr11	43409987	43410987	+	977.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15494.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	3.58850897187792	3.42504730721659	3.14823669364432	3.39565626394547	3.07024993496099	3.56571352538704	-0.181254067115941	0.787174119237217	0.948718549121005
Merged-chr5-135934007-4	chr5	135933501	135934501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	640.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	8.16257614329029	8.43553024404379	8.01663354358724	7.8382824639832	8.27256609383538	7.91762073811722	-0.26970130216671	0.281582126975678	0.679718178746511
Merged-chr5-122653498-3	chr5	122652997	122653997	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 2 of 12)	intron (NM_001038845, intron 2 of 12)	3073.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.99186840793123	4.6266973657377	4.38887896933104	4.32641385995694	4.26548907821298	4.26706654370461	-1.04390156483433	0.0241025809650432	0.182602223702284
Merged-chr5-108066192-3	chr5	108065757	108066757	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253880, intron 1 of 12)	intron (NM_001253880, intron 1 of 12)	583.0	NR_152817	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	6.21409097969774	6.46665017687843	6.36676859827127	6.35999973265976	6.11426704454347	6.56622199062598	-0.00913702098925339	0.975214283869485	0.994454548709104
Merged-chr15-58745653-4	chr15	58745147	58746147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77780.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	8.49045842403554	8.56696523013658	7.92475946151644	8.34401481224198	8.6950156638425	7.98061326840988	0.0227678705747292	0.937471118791303	0.986057836872162
Merged-chr16-31803882-4	chr16	31803396	31804396	+	968.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 8 of 22)	intron (NM_001357281, intron 8 of 22)	49546.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	2.99381971844104	3.13110263006885	3.34296253843647	3.24842070073389	3.11509814527889	3.19275224554606	0.118059828761072	0.855888117939776	0.966291297241215
Merged-chr8-70616067-4	chr8	70615565	70616565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	-779.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	8.34942598760119	8.08730526512047	7.98081631058241	8.34349663278109	8.66602995987752	8.11884653431089	0.350885057125686	0.162267915123228	0.535696071569842
Merged-chr15-24589226-4	chr15	24588701	24589701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	824563.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.48407648653982	4.14030872599915	3.82854099098547	4.17470569625964	4.21427719827131	4.25987734107471	0.0711058340051132	0.890771407047048	0.974561590942893
Merged-chr7-102394117-4	chr7	102393639	102394639	+	659.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 3 of 11)	ID_B1|SINE|B4	-47556.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	3.73780438023467	3.3911476954033	3.43359843746773	3.27108656147399	3.19276501237283	3.5048923844854	-0.809545936950183	0.19323796624375	0.580409562689281
Merged-chr18-4304584-2	chr18	4304084	4305084	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B4|LTR|ERVK	48369.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.88610713810781	3.83698787115546	3.68485032576173	4.02093203518212	3.88735323054484	4.10801262507446	0.588835565571747	0.254603598864856	0.651643384054634
Merged-chr13-111936583-2	chr13	111936083	111937083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	68647.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	7.08930599232631	7.06681603614135	6.89881916122125	7.11664281050105	7.07237693139086	6.7046165012751	-0.0587481285199588	0.821619721379834	0.958023303204974
Merged-chr13-34253776-4	chr13	34253246	34254246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90782.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	7.17883576661046	7.28354514377771	7.21653680616305	6.97101201816505	7.25509211759838	6.8739258582984	-0.259290774222345	0.303782550033162	0.700294220341559
Merged-chr14-16365706-4	chr14	16365196	16366196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009409, exon 1 of 36)	exon (NM_009409, exon 1 of 36)	490.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	8.10211488495279	8.34519984288329	8.00530246525922	8.0549134665976	7.99230566572743	8.20643711658141	-0.112775201518148	0.616341287916599	0.888323384760338
Merged-chr2-90583751-4	chr2	90583239	90584239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3092.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.39878386820166	5.39091650925057	4.99080752148461	5.16326826442405	4.91383675010751	4.9018907862873	-0.591670535420014	0.121585913843013	0.466432490504814
Merged-chr11-82567541-4	chr11	82567024	82568024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65829.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	6.31986172367805	6.79940957623864	6.87533401263458	6.72079858544604	6.83686538248253	6.69538516597468	0.114966885203711	0.688708989197658	0.917235946766438
Merged-chr9-26999625-4	chr9	26999145	27000145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144543)	promoter-TSS (NM_144543)	-32.0	NM_144543	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	6.19420954941243	6.69086415062481	6.48480450836536	6.47768827980247	6.43855103989222	6.21130580135596	-0.142422130402386	0.631541159804516	0.895217663117788
Merged-chr15-75832257-3	chr15	75831732	75832732	+	953.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172121, intron 3 of 11)	ID_B1|SINE|B4	9676.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	4.44804567090371	4.300688923042	4.51849869909947	4.28267100776039	3.99620593842078	4.58408262165998	-0.327540316670525	0.497907286186161	0.833817084327451
Merged-chr4-155683890-4	chr4	155683388	155684388	+	921.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10454.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	3.75943971405443	4.03727764555785	3.82625759905662	3.26082144688282	3.34067525307571	3.41121416535182	-2.01624989186026	0.000814233258243907	0.0153594923944591
Merged-chr11-115653706-4	chr11	115653209	115654209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-25414.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	7.8695712234213	7.94787174075442	7.38608904884306	7.42869627302332	7.70968066239031	7.37489950880802	-0.357067500818065	0.179597832147329	0.56110368604883
Merged-chr6-40595364-4	chr6	40594858	40595858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9553.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	3.81296616723479	3.74132870238105	3.79278852793646	3.5601796681618	3.87962894628065	3.76006879390383	-0.119456146768345	0.82534447033595	0.958821343666982
Merged-chr13-96578779-4	chr13	96578273	96579273	+	796.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023420, intron 3 of 17)	RMER6B|LTR|ERVK	36038.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	4.65779999956704	4.76657178246012	4.91637494144199	4.72643871740815	4.68777024659251	4.80108410044062	-0.0973815560349142	0.806995414147313	0.954399610026228
Merged-chr13-34874425-4	chr13	34873921	34874921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1073.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	6.2729135577796	6.45140372218125	6.42931841851204	6.33598504716015	6.46320105816484	6.50646866628675	0.0822962675275743	0.760706176737706	0.941002855722266
Merged-chr11-48788472-2	chr11	48787972	48788972	+	853.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A|LINE|L1	-11888.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	7.41408454045335	7.34242936003645	7.25479788353296	7.88331833669874	7.7928116194958	7.56326671311121	0.606353980571431	0.00906833433438251	0.0940376325143693
Merged-chr11-108224247-2	chr11	108223747	108224747	+	771.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	119641.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.55204790095722	5.34143481663131	5.31216211801851	5.5973517886726	5.56377725198795	5.01593308181022	0.0428968246962975	0.908636034311207	0.97927672033099
Merged-chr10-67097989-3	chr10	67097484	67098484	+	958.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-996.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	6.96656789065303	6.91468577380998	6.30239416974914	6.73659760839155	6.88620419041112	6.2283286661342	-0.177508826731092	0.59432174201756	0.87898947489373
Merged-chr5-112951695-2	chr5	112951217	112952217	+	824.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	MER67A|LTR|ERV1	-55355.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	5.12412975734602	5.05671844425738	5.3114232369651	4.94460357962331	4.66706228689239	4.99257315361141	-0.63979501027842	0.0972733410717961	0.415861900215897
Merged-chr11-86655802-4	chr11	86655315	86656315	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	15460.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	3.7339432748469	3.29350786252467	3.77746747678835	3.64607390952919	3.70998592202657	3.47547463515003	0.00767355207458587	0.989872278901864	0.997617458187378
Merged-chr5-43185006-4	chr5	43184513	43185513	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	ORR1E|LTR|ERVL-MaLR	-48450.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.55656369864282	5.00982615338608	5.12690098934695	5.28213037321078	5.51658678618008	5.22417799588418	0.914117751848473	0.0221227441465918	0.172678148734073
Merged-chr9-5344260-4	chr9	5343728	5344728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1248.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	4.15782190778683	4.63724664563783	4.77219926285	4.47613914791137	4.35867381642645	4.72957519742172	-0.0488599601782211	0.918108943248255	0.981747877135909
Merged-chr11-120519898-4	chr11	120519420	120520420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10807.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	7.45223290247389	7.49742998056678	7.19621998988972	7.2580689246651	7.43850709999862	6.98513210012247	-0.212178211616485	0.411653227392531	0.784017205335022
Merged-chr16-4758427-2	chr16	4757927	4758927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	1481.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	6.50512263987375	6.33461277441329	6.07917797788567	6.34707191098426	6.62085837927747	5.64609825503831	-0.0674629784379216	0.854401249789379	0.965987623019113
Merged-chr2-27717087-2	chr2	27716587	27717587	+	971.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	6504.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.85990440260554	7.06657823398943	6.9914710830511	6.66179150782033	6.74837083194234	7.13681502569424	-0.183181409223427	0.497800508178554	0.833791434757709
Merged-chr14-70775035-4	chr14	70774494	70775494	+	636.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	613.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	6.12711541439077	6.38004328191341	6.54178972964791	6.32218447836491	6.5779755873532	6.88244999360574	0.410550137348134	0.177179910167537	0.558127164810064
Merged-chr8-107435777-4	chr8	107435272	107436272	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	-626.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	6.67006241821111	7.19951242337597	6.24334364984506	6.82535552295117	6.87646599729098	6.32706273536863	-0.109401784976334	0.756795052270731	0.939703377146526
Merged-chr10-127385434-2	chr10	127384934	127385934	+	793.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359244, intron 1 of 25)	L2a|LINE|L2	4766.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	2.80326440006422	2.92079790811697	3.01075681858531	3.08731617727595	2.93847847707235	3.02419997635782	0.500026470532954	0.4639072585864	0.816038286358001
Merged-chr8-105854013-2	chr8	105853515	105854515	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1088.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	2.80289845730645	2.82182568736676	2.87470263885841	2.84735238883941	2.93768064908523	2.94702304312295	0.396526696419197	0.567096629752694	0.867742628008279
Merged-chr18-65070780-4	chr18	65070294	65071294	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47267.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.52442111667028	2.51595216063191	2.64039059528849	2.64926512960526	2.35073574762778	2.45829537577505	-0.405723578459466	0.61462859890365	1
Merged-chr2-172392369-3	chr2	172391877	172392877	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1417.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	4.45983615882011	4.41373868445536	4.44930652474714	3.84868242367709	3.85596800234416	4.12289977088216	-1.43552044977827	0.00293078566973389	0.0414102248271722
Merged-chr13-49307758-4	chr13	49307276	49308276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1432.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	7.07420034618865	7.19652770059091	7.10083312521075	7.23860770036458	7.43118274334426	7.43232709195089	0.365178788022996	0.12027837178518	0.463771641846234
Merged-chr10-120112158-2	chr10	120111658	120112658	+	949.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080446, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	807.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	5.29648504188959	5.05144319793499	5.20518582509215	5.38544460952373	5.14061122617438	4.78300188584206	-0.105771021395705	0.787595827325306	0.94877064431094
Merged-chr14-8175259-2	chr14	8174759	8175759	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2267.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	3.31178721279193	3.30584287765592	3.34014258009109	3.18054816263688	3.10716560390297	3.56678131805141	-0.108936792168936	0.864626119949138	0.968297921776544
Merged-chr12-46870253-4	chr12	46869762	46870762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51487.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	3.73285283707016	3.18923117801324	3.41587445820493	3.40689968648704	3.10038803376078	3.13003686260185	-0.971563526499149	0.148275357590145	0.513762236213799
Merged-chr10-99633435-3	chr10	99632955	99633955	+	830.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038019, intron 1 of 2)	B4|SINE|B4	8465.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	3.95378526905658	4.23430636211139	3.9349629917804	4.10515474590615	4.16224899495325	4.68252417711777	0.765058422325867	0.141862607934244	0.502837226027373
Merged-chr15-75842017-4	chr15	75841525	75842525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172121)	promoter-TSS (NM_172121)	-117.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	6.17480735756335	6.22545000386781	6.10160131488766	5.90601602126148	6.23195237612702	6.2856504005403	-0.0356647172970854	0.903624984332157	0.977858102400597
Merged-chr4-41723231-4	chr4	41722733	41723733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016890)	promoter-TSS (NM_016890)	-70.0	NM_016890	53598.0	Mm.29025	NM_016890	ENSMUSG00000028447	Dctn3	p24	dynactin 3	protein-coding	5.50859632034095	5.60111173776607	5.37863149480285	5.44370131020682	5.2851189950647	5.21399347097338	-0.362330776357043	0.286826757380167	0.684141631878715
Merged-chr7-28050157-4	chr7	28049659	28050659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011874)	promoter-TSS (NM_011874)	-67.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	6.24285413618505	6.64802070681707	6.56202661897141	6.36701793882263	6.5955635782569	6.71678126538089	0.111945340285899	0.697837665343104	0.920111182740464
Merged-chr1-120510046-2	chr1	120509546	120510546	+	672.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR12|LTR|ERV1	-5022.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.06278187976434	3.13203004915901	3.05814509879664	3.4294692419898	3.04163954810315	3.30777705644667	0.760919707937839	0.248578096836803	0.64569263919114
Merged-chr9-110342210-3	chr9	110341717	110342717	+	840.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	8861.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	2.86212548910927	3.08733128866504	2.9647271169482	2.7303117039401	2.70666109959703	3.09399251273721	-0.616591595785394	0.401680636065363	0.777748903350594
Merged-chr2-26503147-4	chr2	26502655	26503655	+	814.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132655)	promoter-TSS (NR_132655)	667.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	6.39195112732979	6.79174645547474	6.69010952187746	6.53006465910919	6.59236645095199	6.85236793513234	0.0378236234835238	0.893089126942655	0.975200520944414
Merged-chr19-6240395-2	chr19	6239895	6240895	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1273.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	2.58422927235604	2.51722902017887	2.93857032308132	2.69363172856329	2.83381297636226	2.52677993441132	0.0260716316137194	0.97438993416712	1
Merged-chr15-58141381-4	chr15	58140877	58141877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	11.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	7.22932001612517	7.55175427223427	7.28011902271021	7.12093533551152	6.9935897181655	6.92493656039116	-0.521638074934216	0.0360011805774628	0.233282940073945
Merged-chr19-37070068-4	chr19	37069573	37070573	+	840.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 7 of 10)	L1MA5|LINE|L1	-103770.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	4.27880552629621	4.49674578583206	4.46560874251865	5.31641012882014	4.8874123275836	5.04374314404923	1.56561936459237	0.000219456756574827	0.00539774099943193
Merged-chr3-84040128-8	chr3	84039638	84040638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	23.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	6.68613044108621	7.15847033207481	6.88895712376023	6.80151707736202	6.73367045298122	6.84593982659188	-0.214061079180452	0.42707342475598	0.794027919897564
Merged-chr11-116389353-3	chr11	116388833	116389833	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	23699.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.61562093786802	3.56037524639694	4.0392189811217	5.46829233357976	5.2088835964743	5.41036676927659	5.00266571676148	7.74091430879615e-15	2.07971115156732e-12
Merged-chr17-71223920-2	chr17	71223420	71224420	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 3 of 19)	MTD|LTR|ERVL-MaLR	19266.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.14002703004449	3.00199464831349	2.94636408642071	3.14204849797281	2.83375809716164	3.13971328862728	0.0314741790349179	0.963680243727022	0.991121100730027
Merged-chr6-114886204-1	chr6	114885704	114886704	+	557.0	f0_balb.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	35617.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	2.8805743402481	2.95751146639538	3.02054882510063	3.05771555375449	2.78712464247248	3.14959759322986	0.227844173682921	0.743864126839497	0.935814517574594
Merged-chr7-144469410-2	chr7	144468910	144469910	+	861.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 1 of 15)	intron (NM_001357116, intron 1 of 15)	1525.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	2.81788576155832	2.9477274096256	3.13549578499526	3.02630220657012	2.91686882695895	3.41691672704288	0.720698768611445	0.310666587856092	0.70601423883807
Merged-chr7-63931343-3	chr7	63930850	63931850	+	713.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7565.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.47186113422679	4.59715928173847	4.75669547049901	4.95566553573046	5.15617148002884	5.23029669398174	1.1481070617098	0.00371275396749629	0.0492241606321593
Merged-chr17-84646507-4	chr17	84646002	84647002	+	813.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172256, intron 8 of 12)	intron (NM_172256, intron 8 of 12)	20003.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	4.15791713189264	4.19293044744873	4.18853859360567	3.92190705421022	4.05423898323407	4.16557810781255	-0.379236081493238	0.427532332917485	0.794366397012217
Merged-chr17-78936036-2	chr17	78935531	78936531	+	699.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001024806, exon 2 of 16)	exon (NM_001024806, exon 2 of 16)	1039.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	4.15529727087975	4.34832698586483	4.31919754053295	4.38444101934124	4.58858312874255	4.43047673197229	0.526351686153004	0.238822532876728	0.635539113220622
Merged-chr4-125115792-4	chr4	125115348	125116348	+	827.679138	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12033.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	6.53294149547611	6.74176313875226	7.15254243755716	6.91905273649133	6.76323661787849	7.02935839521054	0.120892682470442	0.674868661502735	0.911865018776908
Merged-chr9-75436676-3	chr9	75436203	75437203	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4821.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.02882782349023	7.13672837797605	6.95897612940983	7.46023808522489	7.63260011693667	6.94374662396253	0.511953704890146	0.06613886567734	0.335647885781904
Merged-chr13-73461691-4	chr13	73461201	73462201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5682.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.70341037437638	3.31081442424928	3.64762704421031	3.66423916098868	3.74500208050825	3.71781801436563	0.506434993378351	0.379770827733226	0.762069431197277
Merged-chr2-120404681-4	chr2	120404178	120405178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-562.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	7.7562918709474	7.89909931298208	7.8957291338527	7.99547337969008	8.33838671628926	7.87963179649557	0.346081472057545	0.145347923707862	0.508390278977779
Merged-chr16-85117628-4	chr16	85117128	85118128	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	56079.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.32427045479461	4.37921825732337	4.67455361409042	4.22702956668075	4.35504869190649	4.59024270360228	-0.170057723381841	0.709859576031126	0.924148005169415
Merged-chr10-79779385-2	chr10	79778885	79779885	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031380, intron 2 of 4)	intron (NM_031380, intron 2 of 4)	2111.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	1.97805909926985	1.81120186228839	2.00128732368594	1.6823587918679	1.64792179396555	1.66250774137317	-2.90835522080075	0.0162284461066961	1
Merged-chr13-49341501-4	chr13	49341015	49342015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029791)	promoter-TSS (NM_029791)	-34.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	7.14939656291376	7.58388587941084	6.97054562641263	7.08431911940009	7.30695249360603	6.76965283212549	-0.286604756779559	0.337750216771489	0.727637356447098
Merged-chr2-27308627-4	chr2	27308114	27309114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	MTE2a|LTR|ERVL-MaLR	-61311.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	6.45905541112678	6.5381064182054	6.37947020146891	5.97534997710598	5.93967095939352	5.94812350964142	-0.858564202224378	0.00200544505933894	0.0310454088367394
Merged-chr14-74928980-4	chr14	74928480	74929480	+	798.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	18897.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	3.25389786800475	3.46908845027472	3.520113736382	3.8555927825707	3.46215181372971	3.64500597717186	0.88377456530534	0.138855498287849	0.497840757563569
Merged-chr5-112280350-4	chr5	112279824	112280824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	MIR3|SINE|MIR	3633.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	7.51310934271945	7.58961087351565	7.47136221027506	7.28019958422041	7.4588224118565	7.31227191974401	-0.250834499807129	0.270785112931564	0.667817293838275
Merged-chr7-80636283-2	chr7	80635783	80636783	+	924.833374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040343, exon 2 of 5)	non-coding (NR_040343, exon 2 of 5)	266.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	3.8289426693203	3.91779960359948	3.6274563403029	3.81503358922482	3.71041474649827	3.58530984077056	-0.306609821075817	0.575882121870174	0.87142885060749
Merged-chr14-30746483-3	chr14	30746019	30747019	+	997.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	30904.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	5.72701092436145	5.35693406064175	5.64413399312093	5.66616510803539	5.39726643256622	5.45199972397677	-0.138879624323841	0.68560646823402	0.916331487430729
Merged-chr6-129474718-4	chr6	129474236	129475236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1957.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	4.44615562713416	4.52953154733571	4.10591959242369	4.47087094605539	4.50059545886024	4.46247392254803	0.237174033792963	0.602829593779202	0.882397657327329
Merged-chr10-94504905-1	chr10	94504405	94505405	+	555.0	f1_balb.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9952.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.65217612131622	7.78954600227491	7.53920768615976	7.23205573029069	7.59081855429072	7.1679911240007	-0.457248697654838	0.0699210312983715	0.34618524171575
Merged-chr4-136139640-2	chr4	136139140	136140140	+	952.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4182.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.08557450619384	6.17850345468959	6.01244766976725	5.83384296577277	5.77508643244326	5.57692335014199	-0.627954878215644	0.0383651500204301	0.242464484497945
Merged-chr11-99163236-2	chr11	99162736	99163736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8159.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	3.22579085527395	2.99704035441288	2.97232142219942	3.26871232132312	3.02282655100571	3.39341919804981	0.672537955714803	0.321369919181725	0.714837665357421
Merged-chr14-31130476-2	chr14	31129976	31130976	+	900.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1546.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	3.74350817262339	3.78989400127301	3.79792515584464	3.79349094287086	3.59514367139356	3.86710182019086	-0.0911648382674007	0.864326095882471	0.968269312109804
Merged-chr2-118548755-6	chr2	118548252	118549252	+	866.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138313, intron 2 of 4)	intron (NM_138313, intron 2 of 4)	934.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.37655925825878	4.18495443965454	4.22128923126652	4.75607811324166	4.5407362064267	4.5597740894173	0.904645770778677	0.0405021270165756	0.250766770799973
Merged-chr11-109470316-4	chr11	109469824	109470824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	2905.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	6.08602849281946	6.02472643891098	5.80564540703448	5.94061363040008	6.03474915869769	5.9673426645696	-0.00499202084743657	0.986602485715025	0.997063455776714
Merged-chr5-137624246-4	chr5	137623733	137624733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027708, exon 3 of 10)	exon (NM_027708, exon 3 of 10)	845.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	5.68058271333327	5.38336212134429	5.92251992191075	5.55110958634257	5.59809569008419	5.64479511289361	-0.133385760293355	0.695801686202048	0.919291538728398
Merged-chr17-31095905-1	chr17	31095405	31096405	+	586.0	f1_c57bl6.idr	intron (NM_009593, intron 4 of 14)	intron (NM_009593, intron 4 of 14)	33706.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	2.7441264642242	2.52949741827708	3.00979746855419	2.75370610273986	2.64697881524283	2.85311630343982	-0.101249046282751	0.895429782343055	0.975665889379756
Merged-chr16-8823859-4	chr16	8823366	8824366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6234.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	4.1023733763581	4.15484650813616	4.29796408381565	4.25276023974037	3.99635547443344	4.44690427715371	0.14057757809793	0.771790408808367	0.943614978016208
Merged-chr1-43092497-7	chr1	43091995	43092995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357299)	promoter-TSS (NM_001357299)	-9.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	7.31510057984542	7.45497417456346	7.39757169041726	7.19393480821104	7.22756289449156	7.26751548531375	-0.240845416025681	0.291212356550426	0.688953904178097
Merged-chr15-76626135-4	chr15	76625644	76626644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-60.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	7.09251529160418	7.23174949516223	7.43605693143359	7.31357220414088	7.44985562541957	7.30085559908808	0.157629008413524	0.514356262176991	0.843107848235413
Merged-chr5-123080318-4	chr5	123079837	123080837	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	4062.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	6.21934494093963	6.44323867382176	6.09667905181084	5.72159601236344	6.16620356011409	5.92296924237928	-0.524332722322999	0.0964731917076585	0.414036586321995
Merged-chr11-121793707-4	chr11	121793214	121794214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-36504.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	5.3380626421585	5.35830967527436	5.51025122726963	5.20015886143587	5.04000239754444	5.2490317533549	-0.484953134025125	0.164796947772898	0.539485785555037
Merged-chr17-71306760-2	chr17	71306274	71307274	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	4237.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.87440591930699	2.79318048191819	3.44980370566011	2.8401314389112	2.60843411158367	2.99715108837978	-1.14830773715853	0.145187089767432	0.508278212537777
Merged-chr19-33325487-2	chr19	33324987	33325987	+	733.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	66808.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	3.14303967879704	3.58692293381011	3.64893232742347	3.32073169649431	3.27347310166907	3.61931641740309	-0.252492427225137	0.695254139567689	0.919230570201314
Merged-chr6-58610645-2	chr6	58610145	58611145	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	13973.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	2.86442933878954	2.98228053883304	3.19044434098827	2.8909606692865	3.19852953700916	3.1503165455061	0.333855585704867	0.629695499347196	0.894368822710663
Merged-chr3-87618837-2	chr3	87618309	87619309	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1250.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	6.2763638314123	6.34748740889763	6.35007489803901	5.66689538668869	5.653339942316	5.80534530725687	-1.07925209704647	0.000203090235176379	0.00507927030013711
Merged-chr11-49100609-4	chr11	49100117	49101117	+	938.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	13140.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	4.4174499699537	4.46173757205139	4.95816656204756	4.9411445323319	4.59049725791025	4.92144173528705	0.461319923111971	0.301624439369159	0.698357347404667
Merged-chr13-3547601-1	chr13	3547101	3548101	+	656.0	f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	B3|SINE|B2	9526.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	5.13424022224938	4.99713747501724	5.43312151205272	4.98329617418291	5.01847496184021	5.54723267035706	0.0116586487550182	0.976883652880151	0.994769134402338
Merged-chr7-34234140-4	chr7	34233592	34234592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3756.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	7.09374360215193	7.45373530770031	7.14099671742156	6.863351254218	7.09786341804958	6.83960574616924	-0.450173174923466	0.0852151266095172	0.386407643320147
Merged-chr17-84145538-4	chr17	84145040	84146040	+	723.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42407.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.1513619722279	5.02746795002187	5.45005397978911	4.69264475230717	4.65394093539959	5.43295383678216	-0.519981861417676	0.244903463062857	0.642344989479084
Merged-chr2-94010775-4	chr2	94010258	94011258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026944)	promoter-TSS (NM_026944)	-28.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	6.30259935205507	6.34863362004076	6.16698485657263	6.03699162478967	6.17004029412109	6.20633789887525	-0.239062581990047	0.394417062629733	0.772347100141483
Merged-chr10-57731822-4	chr10	57731322	57732322	+	965.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-53101.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.18887487374263	5.10848265398443	5.22255446876814	5.07732330371473	5.19867787553441	5.25439267724372	0.012363632875097	0.972116455155805	0.993868590220018
Merged-chr3-21991897-4	chr3	21991401	21992401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84751.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.33724696062025	6.5103244488537	6.37947856134923	6.59141904327592	6.58555601381406	6.40076990209252	0.196461490242966	0.463864706763743	0.816038286358001
Merged-chr7-97246500-3	chr7	97246120	97247120	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	79344.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	4.40459883643669	4.31477582390123	4.54568562477789	4.138841455524	4.06095260096049	4.23545954784598	-0.756505636571065	0.100060104542719	0.421901346852669
Merged-chr4-137994756-4	chr4	137994246	137995246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	1290.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	7.8805775983764	7.829608062255	7.81735771824657	7.85553062403075	8.11304877840541	7.68893224524915	0.0903307350873784	0.697213347046654	0.919859963548202
Merged-chr11-55076367-2	chr11	55075867	55076867	+	694.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	1764.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	3.03602722695096	2.83261854354505	3.10635360543607	3.04353206774056	2.92273336696071	3.12117195459219	0.159766603649968	0.814721262104908	0.956369939298364
Merged-chr18-44608177-3	chr18	44607682	44608682	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53483.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	3.42829214709274	3.38026335507617	3.61395679305571	2.94828264882326	2.66077325601225	3.1519477463538	-2.65684740612446	0.000963450621541892	0.0175036679732004
Merged-chr13-52062110-4	chr13	52061598	52062598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-34643.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.29920711061121	6.27935301093984	6.8493318441499	6.35798542039431	6.2083985781232	6.61907841873895	-0.154348586065511	0.626225712075597	0.892823910256439
Merged-chr17-46751613-4	chr17	46751115	46752115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	599.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	7.68686618876752	7.68312654657055	7.86439980174416	7.87805373147012	7.8692744627511	7.88933835204559	0.194642275687797	0.365863050205844	0.75098632561679
Merged-chr11-83616765-4	chr11	83616258	83617258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-23671.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.49127278166522	6.5429191644252	6.25437094422859	6.01180032711638	6.32146511175797	5.69443085911204	-0.644741667161814	0.0462178875856195	0.271973905005219
Merged-chr7-105640413-4	chr7	105639919	105640919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	-3.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	7.84426753508082	7.90478943132885	7.58537143999365	7.7098536325739	7.71448650647522	7.56292344522047	-0.17965507194068	0.433497621479389	0.797815674529737
Merged-chr1-152779238-4	chr1	152778752	152779752	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12710.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	3.61196455249012	3.22101799183079	3.46498558048577	3.46723365896521	3.26982455440545	3.73945394832523	0.206718261745287	0.742424159029933	0.935219340999573
Merged-chr5-74705268-3	chr5	74704770	74705770	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2367.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.78698355652381	5.89082832944102	5.96732829744481	4.16564955795836	4.01966166596067	4.30218290921577	-4.22617333615575	1.09485486922073e-18	5.87004621454286e-16
Merged-chr11-115700426-4	chr11	115699927	115700927	+	965.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	-499.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.54607485283187	7.3710289036172	7.18414270462212	7.47462961828036	7.93091515065071	7.38521140576905	0.363707021133352	0.178572489050084	0.55984058736607
Merged-chr15-103513903-2	chr15	103513403	103514403	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	-1074.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.33504999061582	3.5631059258146	3.51910304859798	3.29847685363939	3.26901986122054	3.78541429811547	-0.0409690634813812	0.947924667709174	0.988023646838258
Merged-chr1-86416071-3	chr1	86415582	86416582	+	941.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10247.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.70826100532766	4.44739894009161	4.86994174798964	4.70844945708002	4.68801443280272	4.67416422324899	0.033076032916808	0.936995353639161	0.986037792257163
Merged-chr5-121384622-2	chr5	121384122	121385122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172275, intron 1 of 11)	L1MC4|LINE|L1	787.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	8.33923629027893	8.58233145217461	8.00839330353374	8.4071130168236	8.93363049916037	8.40324261067655	0.381866452152714	0.158566535900853	0.530390911691518
Merged-chr1-138550412-4	chr1	138549927	138550927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 2 of 9)	RLTR26_Mus|LTR|ERVK	69330.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	5.27915018057792	5.30730980920231	5.45080020856771	5.10494716058504	5.28651338135168	5.21021137667696	-0.273026384572247	0.433677591173384	0.797909324825555
Merged-chr2-73553588-4	chr2	73553085	73554085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24098.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.08972225010717	6.62380150506321	6.46169513934336	6.02179058113251	6.34123305224924	6.37658306828528	-0.256931496754355	0.410268965865295	0.783153478130751
Merged-chr10-117719138-4	chr10	117718625	117719625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-8367.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.86172149497285	6.31676006954984	6.74347731339335	7.02792321656281	6.90185443439475	6.81744663780647	0.406982866535813	0.152209189099251	0.520212027097609
Merged-chr7-83812650-2	chr7	83812150	83813150	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17811.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	2.37800914926162	2.23898694408302	2.33098157444074	2.5363528247553	2.29948518037351	2.53578103508216	0.905669038935214	0.280574041929279	1
Merged-chr15-8634979-4	chr15	8634479	8635479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75828.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	7.23910412130963	6.89440661608482	6.79213592491989	7.4023100041844	7.65110716983189	7.21657574236624	0.665798532146717	0.0145334175493227	0.129850381986904
Merged-chr9-40242392-1	chr9	40241892	40242892	+	541.0	f1_balb.idr	Intergenic	Intergenic	-26824.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	3.2057952623177	3.42837803122729	3.50276417817274	3.68152869295862	3.73154833036431	3.5190558671547	0.993823468412402	0.0930518011417574	0.406374548333771
Merged-chr11-46810715-4	chr11	46810203	46811203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178759)	promoter-TSS (NM_178759)	-96.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.08529931150178	7.22543877766339	7.26386158702255	7.30346929625289	7.4971559573236	7.01737532132323	0.160314161796615	0.530957803994831	0.851363932161699
Merged-chr4-116557082-4	chr4	116556580	116557580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-647.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	8.43338804742089	8.51706242556398	8.4796420585921	8.53363489378134	8.84164333063782	8.60328776868302	0.267470854853515	0.203994991485976	0.594245037514532
Merged-chr17-24960822-4	chr17	24960293	24961293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198937)	promoter-TSS (NM_198937)	-170.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	6.10266065931078	6.21262443219081	6.11460480059478	5.71582843274151	6.11446799158405	5.71052528574287	-0.463778249584629	0.140919357305571	0.501523433818732
Merged-chr7-43546196-4	chr7	43545696	43546696	+	964.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13025.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	3.18384965920668	3.04218339013315	3.41056626158007	3.13488403391427	2.89824751634297	3.09710501446002	-0.752028969743656	0.266123083106358	0.663894604423308
Merged-chr19-12483791-3	chr19	12483303	12484303	+	734.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 4 of 8)	intron (NM_172442, intron 4 of 8)	18193.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	4.06232438928394	3.74032435391768	4.14240616969678	3.71381599000007	3.74456425865012	3.78475797260398	-0.757920257097257	0.156485291890358	0.527122318915315
Merged-chr16-93816015-3	chr16	93815537	93816537	+	897.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16084.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	7.70199967918446	7.64874110525184	7.34770343031927	7.79824915826757	8.14865421184301	7.59838145527903	0.426374607119481	0.103206939199351	0.428296315983601
Merged-chr9-32676739-4	chr9	32676238	32677238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19304.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.883380413902	6.94292131174585	6.41444348148173	6.73327973929856	7.00472650519704	6.47473952302917	-0.0171047416410977	0.955031048569915	0.989683851514547
Merged-chr19-40650286-4	chr19	40649794	40650794	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MC3|LINE|L1	-9476.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.28158326235296	5.28112111650048	5.3239031077888	5.01479727839837	5.1312760515739	5.13101990609254	-0.410265825827214	0.24238733695815	0.639506411823239
Merged-chr10-67027676-2	chr10	67027176	67028176	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	intron (NR_110511, intron 2 of 6)	22601.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.58251515973767	4.32757443265561	4.74988974547336	4.79491911752657	4.54611895762657	4.95445045184077	0.49916470863734	0.254422840990028	0.651422827760809
Merged-chr9-16229106-4	chr9	16228622	16229622	+	949.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	149109.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.22287811146319	3.42828564215336	3.44682227531102	3.5609895631784	3.35214144194142	3.62248703639949	0.53924533957553	0.368805046803312	0.753638793969867
Merged-chr3-148221051-4	chr3	148220532	148221532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	733603.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.07724878915783	3.60858372928982	3.38356495314035	3.40419926512171	3.04733126559657	3.0656886904748	-2.11026359240586	0.00322740940889169	0.0445867976249477
Merged-chr2-148527216-4	chr2	148526702	148527702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83667.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.73371478110324	5.84515216601841	5.93122272764546	5.90736765259016	5.88451129672877	5.68933818922135	0.0067567390504523	0.982411302358844	0.995997217680293
Merged-chr5-30649478-4	chr5	30648979	30649979	+	817.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	1540.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	6.9649008062468	7.47727015549368	7.09970218458673	7.40484940352865	7.25018373282276	7.05096577713421	0.0631618836495701	0.816910843080564	0.956754861188725
Merged-chr7-142403830-4	chr7	142403338	142404338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15968.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.19020767778895	6.80434892198994	6.67987835394903	7.0078637143554	7.25582230240902	7.01298195329182	0.279272876217779	0.312526298198881	0.707190484237326
Merged-chr9-35054587-1	chr9	35054087	35055087	+	709.0	f1_balb.idr	intron (NM_009178, intron 4 of 10)	intron (NM_009178, intron 4 of 10)	-62141.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.32207679130538	4.39529040546495	4.3962109758773	4.32388868501091	4.35286861511644	4.73537144442023	0.261497656861469	0.562360657672686	0.86571315867742
Merged-chr4-66788442-3	chr4	66787907	66788907	+	762.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39144.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.19772662658637	4.80452681647395	4.68243769455624	5.56641447778731	5.31993679821354	4.56212122352792	0.624813631695203	0.192980693849322	0.580092394559965
Merged-chr16-57482445-4	chr16	57481950	57482950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66792.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.88852107153056	4.69889589055134	4.70323887536976	4.41917976313698	4.25581320057154	4.19382506979798	-1.1819076502046	0.00683955637263908	0.0768127691529966
Merged-chr1-148904286-4	chr1	148903780	148904780	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1018159.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.36424836049866	6.53653309672808	6.23384806570615	6.3027152925719	6.30914002885211	5.83806136364094	-0.345536775283868	0.259639296661544	0.657223042078191
Merged-chr4-155669473-6	chr4	155668928	155669928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256107)	promoter-TSS (NM_001256107)	-174.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	7.40563235697603	7.8250465574869	7.48602047820185	7.58587595409778	7.59725838148241	7.52263233013299	-0.0293519003032401	0.903822423868672	0.977872706584114
Merged-chr7-98309542-4	chr7	98309040	98310040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025408)	promoter-TSS (NM_025408)	2.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	7.53738053282821	7.40710492125733	7.41023602446605	7.22857232539845	7.3132073688236	7.18182157291112	-0.308791983940314	0.177921812777523	0.55892688546374
Merged-chr7-128460524-6	chr7	128460072	128461072	+	892.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347641, intron 1 of 12)	CpG	941.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	5.92162467214165	6.17187875548502	6.26252740634058	6.11428617587803	5.98159096402195	6.44651220792647	0.108053745873687	0.728966633500398	0.930478966998914
Merged-chr17-73107963-4	chr17	73107466	73108466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-19.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	8.14048543665131	8.37430275370384	7.88237383941101	8.1474778578404	8.26791486884732	7.91373538910912	-0.0441455410996288	0.857173991558231	0.966695131396664
Merged-chr2-148500570-5	chr2	148500077	148501077	+	900.8466800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57042.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.76783568320811	3.89044713780965	3.69354337558313	3.75719728098175	3.75887977718008	3.710477966431	-0.155634528471292	0.769013388020188	0.942984010350941
Merged-chr5-5184397-4	chr5	5183907	5184907	+	946.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 5 of 14)	L1M4a1|LINE|L1	81661.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.88597866830469	5.07299465794787	4.92425263459897	4.9563241955317	5.05447916872556	4.79746469223495	-0.0366618890853191	0.923774924471853	0.982758379771574
Merged-chr14-19971030-4	chr14	19970533	19971533	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5660.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.01534913339515	5.83537967958326	5.4822454062728	5.55698200296539	5.81730057972196	5.63558518527937	-0.231092807921546	0.495745936426259	0.832661039123055
Merged-chr11-48871464-4	chr11	48870986	48871986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008326)	promoter-TSS (NM_008326)	-66.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	8.10845648807252	8.40036701692926	7.81296619939832	8.24236068560162	8.40018797118794	8.04724892293094	0.147647870441381	0.561048375397557	0.865378586365624
Merged-chr19-41333805-2	chr19	41333305	41334305	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	L1MC1|LINE|L1	51265.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.06217548224175	7.07420479909786	7.31419810958381	7.36310635052637	7.51948564200565	7.54459118726756	0.489523935761699	0.0393594786692456	0.246353505424296
Merged-chr5-90685205-1	chr5	90684705	90685705	+	816.666687	f0_balb.idr	Intergenic	Intergenic	-44678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.00098307140644	3.85833120615255	3.62887096905053	3.25628832561442	3.05189525644887	3.41884911673303	-2.40381421092944	0.00024047287857402	0.00580989177711588
Merged-chr9-106366788-2	chr9	106366288	106367288	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1844.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.72266762804718	4.87389218767715	5.21365811830673	5.11544010654702	5.06827868424958	4.98073821328837	0.256113941661764	0.513501069406889	0.842599873458526
Merged-chr2-102850025-3	chr2	102849537	102850537	+	737.81665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	51628.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.30208589520053	4.15695852013574	4.4454916641832	3.81876096451381	3.75341913669912	3.65910516186236	-1.67486119340969	0.00138433241297379	0.0232420362023251
Merged-chr5-148400334-4	chr5	148399846	148400846	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-442.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	4.09051289125642	4.07406992748205	3.75253896689865	4.25274900039378	4.14860081706837	4.13934880924603	0.543346797082347	0.27954771764987	0.677243536080196
Merged-chr12-113099773-2	chr12	113099273	113100273	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	intron (NM_001346696, intron 1 of 19)	1495.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	2.67527327978802	2.47021463804446	2.66377540979245	2.67276767241311	2.18849124671499	2.61304891303232	-0.533329152931234	0.561172632400109	1
Merged-chr14-70850460-3	chr14	70849977	70850977	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2456.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.31596311951421	3.49556723562262	3.22943742636987	3.13218714668937	2.98733217892483	3.2435071148362	-1.03564880524923	0.112340884600578	0.44768488150598
Merged-chr14-8286776-2	chr14	8286276	8287276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23001.0	NM_183187	268709.0	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	5.26290771345974	5.57244443957804	4.3452647480708	4.57521079175462	4.73510298195201	4.31066708431646	-1.33989995243401	0.1230238224584	0.469254432800556
Merged-chr5-32121667-2	chr5	32121167	32122167	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14805.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.74497580945247	3.54279008482726	3.26991537979059	3.36856331667079	3.23152818188311	3.46075949936627	-0.712176489930685	0.253746905080242	0.651117231535132
Merged-chr18-80005118-4	chr18	80004617	80005617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41778.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.05629537759236	3.08471475921542	3.18112094919792	3.02241500877517	2.91978341506402	2.96110887733501	-0.642453906172245	0.334661984963346	0.725132921327797
Merged-chr4-108847911-4	chr4	108847470	108848470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029571, exon 1 of 1)	exon (NM_029571, exon 1 of 1)	113.0	NM_029571	100087.0	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	6.2522436674428	6.31095573741295	6.55491974105671	5.82032005906678	5.81962926250437	6.1851301354529	-0.732150677927676	0.0159093465232286	0.13851469137855
Merged-chr3-65949675-4	chr3	65949151	65950151	+	808.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	8598.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	5.40891707422553	5.62769284457114	5.93635080505382	5.58088699594406	5.52771780854801	5.60922084049982	-0.173803128602557	0.609774750384932	0.885315715493415
Merged-chr15-59430560-3	chr15	59430047	59431047	+	989.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	56349.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.55868953381644	5.05406824149919	4.30928360616213	4.24051001713087	3.66634451769608	3.90678767484296	-1.96070661589551	0.000427384667471669	0.00927538430124742
Merged-chr1-13214648-2	chr1	13214146	13215146	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-87483.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	2.45547173048086	2.44751366635914	2.62565769676667	2.3476450440634	2.37166054986251	2.38507722113603	-0.886661835001338	0.277586241586518	1
Merged-chr9-40318970-3	chr9	40318453	40319453	+	922.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	2370.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.03977171492558	4.96091634173636	4.23418875910955	4.17617998297757	4.11755594130033	4.25538045434227	-1.56702833853608	0.00154380215474624	0.0252469908986095
Merged-chr6-134052060-4	chr6	134051552	134052552	+	841.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	16352.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.42001106228922	4.14094831852571	4.16952471568445	4.22832507083013	4.02375361124523	4.32806973134708	-0.172098027065792	0.719521121605036	0.927884839305547
Merged-chr10-26774478-2	chr10	26773978	26774978	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	1966.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.16267039205044	4.13746901266108	4.10227354092244	3.99114562052553	3.90592955854627	4.02742497739276	-0.485039277979882	0.314708492644639	0.709059171318814
Merged-chr12-85602922-4	chr12	85602433	85603433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	MIR|SINE|MIR	2915.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	6.80550248763947	6.69386509675053	6.44964306906082	6.78687572124642	6.73242628949337	6.63559839325652	0.0864070435311378	0.744458591152201	0.935982277711273
Merged-chr14-31372569-2	chr14	31372069	31373069	+	620.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360187)	TTS (NM_001360187)	35931.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	4.23219049485455	4.02300312145769	4.22392574586721	4.09715335005656	4.12004551585448	4.2911504498448	0.0188254699997373	0.968340173142029	0.992775371202587
Merged-chr11-53299858-4	chr11	53299356	53300356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	CpG	623.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	8.66129351488472	8.98351118038941	8.61944000097544	8.55015039934805	8.7672437606862	8.58789909690083	-0.176358880011458	0.42665814532013	0.793840707522572
Merged-chr8-25012951-4	chr8	25012458	25013458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	PB1D9|SINE|Alu	3964.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	6.63200658725058	6.66236790011933	6.67869235159288	7.07119622530147	7.25807234440572	7.10946193761468	0.76378873501478	0.00178970278209522	0.0283652550652531
Merged-chr8-105860510-4	chr8	105860024	105861024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-9.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	7.08209049375089	7.0452703007415	6.76300659912543	7.31787616449888	7.10751223526014	7.14831778514351	0.322935254284009	0.199825375218028	0.588423039287315
Merged-chr11-102319453-4	chr11	102318891	102319891	+	829.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302954)	promoter-TSS (NM_001302954)	-295.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	5.64267770693236	5.7654906867913	5.8914060419931	5.95654163917876	5.81350479885063	5.99809683645715	0.277598893900498	0.364913370160804	0.750147286220328
Merged-chr10-57792190-2	chr10	57791690	57792690	+	571.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-2354.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	6.17172781659363	6.35928960512826	6.8057613189099	6.26489124972623	6.08092152901053	6.46751354041373	-0.313659911815908	0.325584446106247	0.718159390122652
Merged-chr7-101844276-2	chr7	101843776	101844776	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	1055.0	NM_001303231	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	4.15910117534074	4.44226249373436	4.57728233529063	4.96067992841799	4.68021543297701	4.60327552143956	0.881888872183134	0.0475522001186173	0.276249631185499
Merged-chr1-78488100-4	chr1	78487588	78488588	+	624.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	intron (NM_001278075, intron 1 of 17)	809.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	5.82850802463641	5.73700663468934	5.64559531086514	6.15212477398875	6.02636701843208	5.84373528112874	0.485503292823554	0.113128224472941	0.449362970586178
Merged-chr8-111522205-4	chr8	111521691	111522691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176923)	promoter-TSS (NM_176923)	-84.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	4.91416980501561	4.86732875424013	5.14202157131754	5.48976064059563	5.36091235670802	5.10377986555793	0.75567335272934	0.0416222214992041	0.255078412897613
Merged-chr8-108182980-4	chr8	108182467	108183467	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	401710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.93903716155678	3.35498374657894	3.04727803622899	3.17599695831009	3.25399442046481	3.64457796746322	0.999403651949142	0.157125886601787	0.528098346825606
Merged-chr11-50289540-2	chr11	50289040	50290040	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	ORR1B2|LTR|ERVL-MaLR	2796.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	3.52086003379395	3.3248427624976	3.65416443413494	3.56316795844176	3.17778742606279	3.40717304198803	-0.423992367174684	0.494115052324734	0.831815174927983
Merged-chr13-77708686-4	chr13	77708187	77709187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163419)	promoter-TSS (NM_001163419)	-3.0	NM_001163420	68675.0	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	6.50378800428533	6.62772251268052	6.15172224441309	6.5428993730588	6.54909514069434	6.14372158078977	-0.0302492857315511	0.920656195086259	0.982463724790289
Merged-chr7-101894802-1	chr7	101894302	101895302	+	551.0	f1_c57bl6.idr	intron (NM_001291352, intron 1 of 5)	B1F|SINE|Alu	-1529.0	NM_001291348	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	3.57051873211975	3.61965728768146	3.8414221816723	3.82241782167534	3.77329701590025	3.9100471860716	0.522814491112455	0.329073444294945	0.72115269198792
Merged-chr2-60869227-2	chr2	60868727	60869727	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	12211.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.00721212387965	3.88658572874763	4.19092761183099	4.1214669490174	4.19679736357271	3.92311201227399	0.195637451721955	0.695189403463698	0.919230570201314
Merged-chr2-164457035-4	chr2	164456561	164457561	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	4.6010045163236	4.39477525463866	4.34487862998952	4.93201395727743	4.26963359228656	4.7866165697073	0.561525368774188	0.236140732359888	0.632526334606025
Merged-chr3-63976148-4	chr3	63975665	63976665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	22.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	6.93670800347452	7.36314473508614	7.17286813957521	7.08644427352968	6.93447912772717	7.13298721302416	-0.184157016946371	0.476228358557235	0.822450123983661
Merged-chr8-120108045-4	chr8	120107554	120108554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-6098.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	6.83032141310289	6.53574160908595	6.8092620934755	6.68871274726651	6.87351842906735	6.7932145905216	0.0966628363120705	0.712745145309609	0.925293327230627
Merged-chr14-19985335-4	chr14	19984872	19985872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8123.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.26196825507955	7.32507317038738	7.05044779503684	7.04333036801921	7.0054415914648	7.17195096353995	-0.232219858337792	0.338677787434514	0.728588578553954
Merged-chr9-59657340-5	chr9	59656847	59657847	+	992.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	CpG	979.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	6.7544657150009	6.87077250164329	6.6616822779519	7.0851413981521	7.01719808309326	6.75380072049299	0.303202123941779	0.240650517920138	0.637714978289328
Merged-chr4-141214442-2	chr4	141213942	141214942	+	691.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081174, exon 2 of 6)	exon (NM_001081174, exon 2 of 6)	486.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	2.99405450762732	3.11084089640779	3.09696297094149	3.5322885733484	3.24269818649994	3.34700847411305	1.30785288350806	0.0430611636442449	0.260283925357336
Merged-chr17-27907744-4	chr17	27907223	27908223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1519.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	6.59353179917095	6.57351748652893	6.27658931840855	6.37940139935315	6.59233536912924	6.33696881569417	-0.0791943532919142	0.777992713138382	0.945295744103702
Merged-chr11-120040619-4	chr11	120040117	120041117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1164.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	7.96334076953514	8.29668329917541	7.86834354462998	7.47210294858541	7.94814973481794	7.24780102580044	-0.653866164848536	0.0219448764973231	0.171760820580309
Merged-chr17-23746501-2	chr17	23745975	23746975	+	898.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028416)	promoter-TSS (NM_028416)	-646.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	2.76376548417939	2.62665629917029	2.72694646135989	2.55120144940792	2.39725346650869	2.67750184265914	-0.963225926151026	0.222583764104687	1
Merged-chr11-44437963-4	chr11	44437463	44438463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32585.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	5.84159646648378	5.95865998303714	5.90144572447678	6.6543263720875	6.63126068112503	6.13242713741407	1.01076361731357	0.000874137752633789	0.0162418516854874
Merged-chr1-36309255-3	chr1	36308771	36309771	+	851.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1538.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	4.4709211816709	4.44054923086995	4.25640698028906	4.19242791310311	3.72257918177762	4.18612607375862	-0.98601251026426	0.0518994362100091	0.290880317498039
Merged-chr15-57695801-7	chr15	57695355	57696355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	CpG	1188.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	8.24183627245241	8.32553509561943	7.64538989486148	7.79353502463596	7.30300693068497	7.4325869292729	-0.836948370926886	0.00333291946402393	0.0455134559831992
Merged-chr10-111068076-1	chr10	111067576	111068576	+	589.0	f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-58010.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	4.54080550133856	4.75527515150266	4.87375433567804	5.6981965321413	6.1264635090305	5.75949889005519	2.34563225592264	4.0364360901856e-10	4.71718783977757e-08
Merged-chr8-84501765-4	chr8	84501256	84502256	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 3 of 47)	intron (NM_001252060, intron 3 of 47)	86392.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	5.02651268549728	5.07918534521048	4.91118609812582	4.45463920412675	4.53159215070298	4.49315820771402	-1.20175661623897	0.00286026956372513	0.0405723337637982
Merged-chr9-35107351-4	chr9	35106863	35107863	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-9365.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.64947533129494	3.47175808292829	3.96081479125938	3.81109511051306	3.81378827569802	4.02850868522552	0.595932992763383	0.285568961550164	0.683119312116664
Merged-chr7-58829917-2	chr7	58829417	58830417	+	686.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009728)	TTS (NM_009728)	171715.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.79232207917042	3.7478671123964	3.90040055940959	3.80892693660659	3.80735528413966	3.96852996884259	0.154320634285759	0.765078747153905	0.942123616786297
Merged-chr9-116176496-2	chr9	116176002	116177002	+	586.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1139.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.89270200398932	6.04123553286673	5.79091844929193	5.58101188357049	5.61578934789435	5.48880925344097	-0.637091206904727	0.0423424093402721	0.257869206778787
Merged-chr15-59643098-4	chr15	59642590	59643590	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5564.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.44729092129322	4.37889721037536	4.03881772681141	4.78593029660846	4.69665401346297	4.59215200472	0.949456858400787	0.0378223536216627	0.240511747317023
Merged-chr4-129031615-4	chr4	129031116	129032116	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26655.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	7.10951945719436	6.71272335596095	6.53203298442636	6.94758845164094	6.98249988841749	7.05452849493656	0.269213206850322	0.334855791088361	0.725198429760335
Merged-chr11-20203656-2	chr11	20203156	20204156	+	793.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B3A|SINE|B2	2244.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	7.20813988543933	7.41145424146471	7.01420881821431	7.14655885296473	7.46812868410726	6.8967046209174	-0.0357584566163595	0.897983565859724	0.976213110836171
Merged-chr4-58911223-2	chr4	58910723	58911723	+	807.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	intron (NM_001355697, intron 1 of 49)	707.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	6.9785945516246	7.24829257270692	6.86319419313179	6.93438147252931	6.81172052589479	7.00625768607428	-0.204350219567196	0.42999324094632	0.796023707759393
Merged-chr13-21782737-7	chr13	21782267	21783267	+	835.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178207)	TTS (NM_178207)	630.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	6.35953084378401	6.60529394748278	6.22556024954972	6.80993597888013	7.10443830472509	6.78208807350869	0.785234273025831	0.00528766518207434	0.063571166662338
Merged-chr8-122907327-2	chr8	122906882	122907882	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	PB1D11|SINE|Alu	59008.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.10122524069578	4.09733600813896	3.86063793781531	3.76332064213878	4.09552046416527	4.03177412442175	-0.166093491468131	0.747390507504872	0.936600911319824
Merged-chr11-58636761-4	chr11	58636252	58637252	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3713.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	4.69722178974605	4.77846243472779	4.60123944265929	4.07716975566124	4.05555041716817	4.32882607702599	-1.44209533456208	0.00137721473575846	0.0231519354109056
Merged-chr1-57852873-4	chr1	57852354	57853354	+	918.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	7283.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	5.44412115179583	5.25108766965062	4.99261679317368	4.45464838486632	4.00319462129945	4.44598194921052	-2.2531342434336	6.21626483861462e-07	3.56473442240831e-05
Merged-chr9-100439574-3	chr9	100439079	100440079	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46894.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.54526593471637	4.63387256182111	4.78491584041958	4.59528479762504	4.15767826425814	4.22297788021296	-0.786307976498814	0.0861889331600925	0.388873698643584
Merged-chr7-108935413-2	chr7	108934913	108935913	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025344, intron 1 of 7)	intron (NM_025344, intron 1 of 7)	998.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	4.16062617671075	3.99541566433438	4.02720092641129	4.30176961786177	4.2855730489072	4.14566068599047	0.52383020878261	0.267822739718293	0.664975925109882
Merged-chr1-165650758-2	chr1	165650258	165651258	+	647.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16217.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.23472518345778	3.06455043943468	3.17218043232849	3.21806576377171	3.31678428806269	3.41160414479855	0.649836918511778	0.300562768592438	0.697311691851564
Merged-chr13-95797756-2	chr13	95797262	95798262	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	94160.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.11169267645382	2.00962884955451	1.98116346865694	2.29752835559134	2.13833458305716	2.39513289038443	1.8041656659449	0.0586420288276511	1
Merged-chr5-72164613-2	chr5	72164113	72165113	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356612, intron 1 of 3)	L1M5|LINE|L1	3576.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	3.27086131862113	3.56831107807269	3.25867801846217	3.73985594374015	3.56537643120761	3.62059967132253	0.949520081758157	0.117590219730482	0.457794860113807
Merged-chr14-50829065-1	chr14	50828565	50829565	+	608.666687	f1_balb.idr	intron (NM_009351, intron 48 of 54)	intron (NM_009351, intron 48 of 54)	21149.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	2.66334998717924	2.55313683101168	2.84942575786971	3.03525001170502	2.79323756892076	3.15293247132726	1.59164196094556	0.0365686656653483	0.2353291208571
Merged-chr15-76539762-2	chr15	76539262	76540262	+	884.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_029643, exon 3 of 5)	exon (NM_029643, exon 3 of 5)	819.0	NM_029643	52710.0	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	2.64828984393068	2.67777223749176	2.96246641765388	2.71627759712109	2.73809724729836	2.86137966386259	0.0361504574897199	0.960932449969262	0.990386809359123
Merged-chr11-83223496-4	chr11	83222980	83223980	+	970.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015519)	promoter-TSS (NR_015519)	-96.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	6.85125661340957	7.19171789183121	6.9545349757113	7.04439412686622	7.18230334919184	6.94196710308711	0.0842838085239069	0.742669906215068	0.935349168989816
Merged-chr8-33385642-4	chr8	33385142	33386142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-115.0	NM_011721	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	6.50281827221142	6.64442382855136	6.65951862978745	6.87215552061957	6.82998414801123	6.84151239777326	0.38646931432077	0.123637573118525	0.470614601282993
Merged-chr6-120145642-4	chr6	120145127	120146127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-48196.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	4.77918540503963	4.8659647720713	4.63284295963852	4.55823637102093	4.45443163526497	4.65880087523387	-0.523490266280117	0.204425271198409	0.594949662456522
Merged-chr2-27284328-2	chr2	27283828	27284828	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 14 of 27)	intron (NM_009500, intron 14 of 27)	-37025.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	2.91063346567378	2.68898178682691	3.13706699463248	2.87807604658115	2.86425304509027	3.36425872916278	0.591036956779942	0.43188075779556	0.797114750192572
Merged-chr10-77522138-4	chr10	77521633	77522633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6320.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	6.43831731053794	6.55916207794338	7.04330664728752	6.90604522492702	6.89990108214705	6.64384862944475	0.204827626215162	0.48647392682967	0.827855940662378
Merged-chr5-151108703-3	chr5	151108226	151109226	+	876.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	81467.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	2.89454909336998	3.02582030156491	2.91223234499543	2.89704258023652	2.96000274611659	3.2693795236823	0.45312082674523	0.514124818385806	0.84294183031027
Merged-chr5-92438333-3	chr5	92437828	92438828	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3129.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	3.53901765423243	3.59883990248098	3.55642599924032	3.47576912543733	3.69119788505517	3.62674987900207	0.135290647696659	0.809295778458797	0.954721853010197
Merged-chr4-119977464-1	chr4	119976964	119977964	+	566.0	f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	162786.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	6.86868589649543	6.59388175835359	6.6434413935143	6.77789489263457	6.75062107102355	6.47105099010575	-0.0447032389546705	0.868704709126924	0.969708434868159
Merged-chr11-6526857-3	chr11	6526357	6527357	+	790.866638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	B2_Mm2|SINE|B2	1903.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	4.5845308637985	4.77364995854233	4.81598451938	5.10114891555989	5.09070108720129	4.99209950299264	0.756777319384463	0.04875562246388	0.280363361021045
Merged-chr11-63058756-2	chr11	63058256	63059256	+	795.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2903.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	3.66039341376832	3.75800147074812	3.83980344867155	4.21283532600227	3.96780550695254	3.91032922610157	0.897649645164162	0.0837466561598292	0.382962836103928
Merged-chr8-122471135-2	chr8	122470635	122471635	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	MT2B1|LTR|ERVL	4929.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	3.07274496506692	3.24027084190558	3.43595042627057	3.21083071678869	3.14467167246824	3.60504607971725	0.30104090045584	0.647339915377782	0.901331839739498
Merged-chr1-152513713-2	chr1	152513213	152514213	+	656.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111504.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.62231449130859	2.75223801451032	2.97807925774369	2.77629639095469	2.64028525440676	2.93614354920719	-0.012428566089523	0.986761523436631	0.997078859486262
Merged-chr15-58249694-2	chr15	58249194	58250194	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34802.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	6.33146891956405	5.82952192275256	6.27916515409458	5.99347681979224	6.14961321421192	6.02495034534061	-0.17024678035178	0.588324875599205	0.876341924578126
Merged-chr1-23922417-4	chr1	23921925	23922925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-44.0	NM_028534	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	6.87766226655922	6.54640157539112	6.76151249253257	7.11743510276218	6.92142894731748	6.72477369104537	0.312443335315249	0.248462484511237	0.645580390057801
Merged-chr19-34288539-2	chr19	34288039	34289039	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2120.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	1.7834501103552	1.9361100545636	1.863177122036	2.23885926520548	2.00211783108594	2.3502437183285	2.97669890151865	0.00887837636700126	1
Merged-chr13-91133604-3	chr13	91133125	91134125	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	90362.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	3.91489275574938	4.22986280686161	4.06188057993426	4.09575407785153	4.20043040920285	3.8766469077351	-0.0124626107524928	0.980397858071216	0.995512982807197
Merged-chr1-144295127-4	chr1	144294614	144295614	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46010.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.67586397956633	3.80727075468842	4.02719442577029	3.76311040897867	3.75972789501008	3.91092001493098	-0.0901165016108096	0.865315889151529	0.968641478520565
Merged-chr3-144693290-4	chr3	144692772	144693772	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	27063.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	4.51267938659869	4.88034318358566	5.18346755095013	4.74520296060594	4.95887797951783	5.05943638300027	0.105380311659176	0.806306404631884	0.954125791654011
Merged-chr7-101397367-2	chr7	101396867	101397867	+	982.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 16 of 33)	intron (NM_001040111, intron 16 of 33)	2979.0	NM_198096	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.59957196002826	2.68733901269016	2.9338548462975	2.63000663904246	2.34821904715469	2.77503683802402	-0.835108573712018	0.312674428305455	0.707330048133333
Merged-chr5-31292562-2	chr5	31292062	31293062	+	954.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_022424, exon 7 of 7)	3' UTR (NM_022424, exon 7 of 7)	-1448.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	2.79599030620208	2.71940003567333	2.97276856741248	2.77326739514744	2.61050034774573	2.81015278860918	-0.518234578803929	0.481314211662578	0.825025089591081
Merged-chr2-142858968-4	chr2	142858456	142859456	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42508.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.56074239781495	4.67739502937522	4.27550177376997	4.55828299047249	4.59725896306308	4.43960242544355	0.0282085246278957	0.948997002855927	0.988169196639905
Merged-chr2-27427105-4	chr2	27426579	27427579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	529.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.0476278441006	5.75965207748711	5.76805010244466	5.7412972520981	5.53251860008235	5.58431763993841	-0.453037037825046	0.157774229586507	0.529315325672301
Merged-chr15-6337255-4	chr15	6336777	6337777	+	899.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37488.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.64429443169456	5.82751023656632	5.39248925612293	5.37468351941394	5.50858696122176	5.54671622873934	-0.316409424177835	0.350462676527214	0.738466367557457
Merged-chr3-67581859-2	chr3	67581359	67582359	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	-909.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.57938865433011	3.75383257698629	3.39709045388988	3.73344670865815	4.02350689898179	3.59175744962867	0.70387581185782	0.235437291595306	0.631597709612866
Merged-chr3-103860254-4	chr3	103859756	103860756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-21.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	7.59800285527364	7.66442448553223	7.60474014699911	7.56287331288974	7.91738118462518	7.64265915912058	0.144684186778875	0.534519594717887	0.853068627162717
Merged-chr5-38494026-3	chr5	38493534	38494534	+	804.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145559, intron 1 of 10)	ORR1C1|LTR|ERVL-MaLR	8118.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	2.78495692935481	2.7559467949737	3.11734819074443	3.56812752149527	3.48552579587089	3.31080290985618	2.77599170223343	0.000227706457415754	0.00556446370298094
Merged-chr17-12990926-4	chr17	12990420	12991420	+	983.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	B3|SINE|B2	1339.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	7.09397130868505	7.20700053960021	7.11891001476711	7.21773526988391	7.59360294937183	7.12518067210355	0.295236689046886	0.251874313980608	0.649428218365646
Merged-chr3-88552237-3	chr3	88551741	88552741	+	898.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001362368)	TTS (NM_001362368)	710.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	6.09138683355531	6.05072132415943	6.11029099715649	5.94180664241597	6.0862271953929	6.47205920321023	0.157536176573285	0.607495475649767	0.884581207370863
Merged-chr5-139456845-4	chr5	139456344	139457344	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	PB1D10|SINE|Alu	3690.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	7.04020997360137	7.26571148446484	6.40247773039822	6.76859588162871	6.90163407593931	6.5032591641718	-0.343046602003663	0.288697799190016	0.686124851873233
Merged-chr18-11697787-2	chr18	11697287	11698287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	MTD|LTR|ERVL-MaLR	40438.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.94924049604225	4.02378127897416	4.60792657230519	4.44986240980957	4.63112307598872	4.91453303924527	1.16305897964553	0.0216457403581869	0.17021375617691
Merged-chr11-100735659-4	chr11	100735130	100736130	+	785.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2585.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	6.11912885268731	6.2401489599853	6.49960959515153	6.38032525211389	6.63971075565963	6.33948812210037	0.299675105792915	0.302128191311261	0.69891305259052
Merged-chr4-14865647-4	chr4	14865162	14866162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	1443.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	5.29222126163159	5.08375088510678	4.81429941552584	4.99476493720591	5.17260941601272	4.75686338965771	-0.192777583833773	0.635231787897783	0.896439353901449
Merged-chr6-138140495-4	chr6	138139988	138140988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-39.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	5.89081338452596	6.63007922461888	5.96073714004363	5.41932186435433	5.47020109377905	5.11382363054403	-1.54856951684834	5.23518773020101e-05	0.00164283111689888
Merged-chr15-27627450-2	chr15	27626950	27627950	+	954.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	3243.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	3.65259917787884	3.55942835709121	3.42363476986573	3.92695056900552	3.28582147818452	3.49738897848775	0.170065881819836	0.786523512005779	0.948530822116986
Merged-chr8-117050956-4	chr8	117050473	117051473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 16 of 42)	intron (NM_029686, intron 16 of 42)	31476.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	6.46192870634268	6.62250048310146	6.36581485109629	6.35911356015812	6.27939389254464	5.98581404391736	-0.436136597711969	0.129971630304747	0.482173945088832
Merged-chr12-3221278-4	chr12	3220788	3221788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-14503.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	4.82877495655133	4.58538832938668	4.97058336397911	5.16821377879767	5.07716524107304	4.81206852657389	0.527180261781356	0.188923741987152	0.574413224806041
Merged-chr11-8575536-4	chr11	8575060	8576060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	88975.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.90627751420076	8.27178725405936	7.38817236279086	7.74749286598804	8.01466873537515	7.62752907898611	-0.148214802068806	0.616395682791645	0.888359083506792
Merged-chr9-118692697-2	chr9	118692197	118693197	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	MER5A|DNA|hAT-Charlie	-18995.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.6337549607225	2.78561730696363	3.29993523111903	3.05639792419967	2.66969537003521	3.04850049159352	5.85327073013658e-05	0.99994141136782	0.999986582743456
Merged-chr16-5011827-4	chr16	5011345	5012345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 4 of 10)	intron (NM_133185, intron 4 of 10)	1708.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	5.23349748456723	5.19578438543675	4.9806199507609	4.9109362645655	4.9769593028248	4.9725528102378	-0.415211671267209	0.261294157969448	0.658881274511238
Merged-chr8-72361429-4	chr8	72360942	72361942	+	843.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 21 of 23)	MTC|LTR|ERVL-MaLR	42380.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	3.24240697706877	3.32537115767836	3.61159162432388	3.28821327171124	3.13040663720647	3.37702909547943	-0.535902689320477	0.396018597866132	0.773283164556476
Merged-chr15-76009578-4	chr15	76009125	76010125	+	736.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168253)	promoter-TSS (NM_001168253)	-127.0	NM_001168253	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	4.06856693094407	3.40274635895528	3.99612680601969	3.80736961540495	3.63539798785681	4.10869889895333	0.0154120004732892	0.979800747539702	0.995332945386782
Merged-chr5-118650937-4	chr5	118650450	118651450	+	915.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	90231.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.739896560308	2.6910184649803	2.54529842990703	2.60755535026816	2.46998934135266	2.74628302215438	-0.32001968979117	0.681399410691913	1
Merged-chr8-47674485-4	chr8	47673984	47674984	+	968.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023503, intron 1 of 1)	CpG	675.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	8.01167680729744	8.03171063646991	7.96534724315142	7.95939873131158	8.18691117468964	8.06543886815791	0.102242819169887	0.63064281071956	0.89479314930704
Merged-chr3-79120388-8	chr3	79119949	79120949	+	980.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	24438.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.14449831767955	4.98121242446764	5.35210397118563	5.68297934605758	5.51799292269693	5.11928311081407	0.62991748451682	0.095468921457946	0.411857121795822
Merged-chr8-116945850-3	chr8	116945274	116946274	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	2381.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	6.15963707019783	6.36771829637357	6.54510740642796	6.30700316203239	6.46491752556118	6.55421464315786	0.138392124965626	0.625987301465453	0.892770422921587
Merged-chr12-84176332-4	chr12	84175855	84176855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17660.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	7.82691022904501	7.69164078287877	7.80064361787039	7.64316764174982	7.79423332796132	7.65639570641077	-0.100759498947602	0.645460114655416	0.900561664422279
Merged-chr15-38384883-4	chr15	38384369	38385369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84158.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	7.65412717945689	7.58412998146442	7.46688034940281	7.45337123946119	7.74764787118005	7.17460685452696	-0.118427807963501	0.64682323767785	0.90114476203283
Merged-chr16-36915399-2	chr16	36914899	36915899	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_030035, exon 13 of 22)	exon (NM_030035, exon 13 of 22)	-18210.0	NR_040476	68306.0	Mm.399193	NR_040476	ENSMUSG00000084834	4930565N06Rik	4930428L02Rik	RIKEN cDNA 4930565N06 gene	ncRNA	3.81824094278857	3.63145980274542	3.64431907269798	3.5591930664818	3.71542293870405	3.81649734130606	-0.0165401320523278	0.975933574132553	0.994572735300192
Merged-chr4-122886063-4	chr4	122885590	122886590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-14.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	8.41600730226766	8.72890806572345	8.37270059230056	8.40682272088576	8.73087984848571	8.52393557566159	0.0610794572883368	0.790115770187627	0.949368241827272
Merged-chr11-22784671-3	chr11	22784193	22785193	+	582.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75042.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.71349580314728	3.88756586483126	3.93168746506629	3.72637912279053	3.89058582336793	4.13333792709289	0.240798832025848	0.649244284396198	0.902147045789438
Merged-chr1-71102529-4	chr1	71102020	71103020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	CpG	452.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	6.0256690729121	6.37427213324709	6.21371992954107	6.63049647466276	7.0030206123889	6.84636369571686	1.00249493217596	0.00045371666465484	0.0097351356969056
Merged-chr7-104397461-2	chr7	104396995	104397995	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV-int|LTR|ERVK	-38849.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	2.73343106650786	2.89116116638237	2.86177965089921	2.820829765498	2.58614711959159	2.81337216612932	-0.470080628172484	0.523922304455943	0.848428438699863
Merged-chr19-46759672-2	chr19	46759172	46760172	+	799.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1937.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	4.51183986088086	4.449510941497	4.73689177230521	4.11186163832355	3.70963531001543	4.29552236874174	-1.41285953341145	0.00571311475109964	0.0672576191581068
Merged-chr1-172348256-4	chr1	172347706	172348706	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	6996.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	7.22790614854971	7.29952497465135	7.22529629124411	7.5021114367864	7.37206771783693	6.88797491864039	0.0568153576277631	0.831406609301249	0.960444904168444
Merged-chr10-125966626-1	chr10	125966126	125967126	+	1000.0	f0_balb.idr	exon (NM_177152, exon 1 of 19)	exon (NM_177152, exon 1 of 19)	407.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.19910960027764	3.67072759641967	4.00844435233633	3.90028169152131	3.61924220949617	4.12239540547917	-0.268988692704354	0.634570088378538	0.896350313439852
Merged-chr15-98985480-2	chr15	98984980	98985980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-485.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	8.77070310056938	8.57798887744281	8.29919013803297	8.68206029637154	8.83683769307037	8.49785833133595	0.158260364201721	0.500126430548479	0.834921806675451
Merged-chr6-39372940-4	chr6	39372419	39373419	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361617, exon 2 of 17)	5' UTR (NM_001361617, exon 2 of 17)	4516.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	4.94513919095075	4.70025893712458	4.95043542967492	4.97389467007536	4.56696848244566	4.75650395669754	-0.213033979110815	0.605206343771399	0.883458350775084
Merged-chr13-21940455-4	chr13	21939953	21940953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4641.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	4.81355006212165	4.88248320029903	4.64597336143998	4.83256451939799	5.11613159944154	4.58197845497038	0.194986078438031	0.643896543779661	0.899990653857957
Merged-chr5-134226005-2	chr5	134225505	134226505	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 5 of 10)	B2_Mm1a|SINE|B2	3620.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	3.28470835230807	3.07816270852404	3.56904746283538	3.19509555439797	3.02046592971629	3.43816673967314	-0.390857507749293	0.561298426385263	0.865407801976397
Merged-chr1-176818341-4	chr1	176817834	176818834	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	3674.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	7.7640834466116	7.70564245695865	7.13955462886121	7.43071000504906	7.6650656302818	7.31086685887073	-0.13440378324028	0.627018144041656	0.892988961867358
Merged-chr2-152831524-7	chr2	152831023	152832023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	205.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	7.87127889342448	8.20982441118463	7.59625313679558	7.7041169388737	8.07364113398254	7.6030621706995	-0.153011794582967	0.577233749742544	0.87205828500771
Merged-chr8-119424991-4	chr8	119424499	119425499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12163.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	7.03759001085369	7.22060989329129	6.99601697567133	6.95471900001406	6.9413253255117	6.60046794677235	-0.367053762136279	0.159021527868427	0.531013709888191
Merged-chr9-46091131-2	chr9	46090631	46091631	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	MTB_Mm|LTR|ERVL-MaLR	78311.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	3.61080171008396	3.73486924568881	3.88931246329088	4.05762156475047	3.58079708169448	4.05138011064563	0.518811419102756	0.354786016380365	0.741862808502317
Merged-chr2-3425567-2	chr2	3425067	3426067	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	L1ME3|LINE|L1	1436.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	5.81768127512948	5.93229116863249	5.80647359838534	6.14819001873258	6.04251449701506	6.12567809158163	0.428442898328916	0.142093053079949	0.503232645397833
Merged-chr8-80950931-2	chr8	80950382	80951382	+	707.0	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	64024.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	5.64509929125506	5.72379336294317	6.02116379606273	5.76537072721229	5.6485717733205	5.95083877281906	-0.0201159038068035	0.950478683747456	0.988444308820256
Merged-chr10-53597717-4	chr10	53597211	53598211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025541, intron 1 of 3)	CpG	750.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	7.20038282511345	7.10839964265731	6.84381208452077	7.30960084068279	6.85231038331483	6.91674893223559	-0.0343123817972878	0.900794253297888	0.976984687344864
Merged-chr7-12987407-3	chr7	12986903	12987903	+	990.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009512)	TTS (NM_009512)	9555.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	3.89549417292905	3.69055521773988	3.9361949683475	4.53809342008809	4.8088289972634	5.40556633757004	2.99525862340478	3.11237229330169e-08	2.53896346844164e-06
Merged-chr19-41331790-4	chr19	41331190	41332190	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	53380.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.30689965684646	7.31102065632721	6.9643488353654	7.51428783982077	7.46237323252562	7.39770706504214	0.364521922821341	0.133575349519214	0.488819290786001
Merged-chr12-113153388-3	chr12	113152925	113153925	+	740.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007763, intron 2 of 4)	intron (NM_007763, intron 2 of 4)	1413.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	5.61496957501033	5.49573021671475	5.82134614824666	5.16525561463221	5.18768336269245	5.33305676095939	-0.822912928001171	0.0165316821789021	0.142280534830584
Merged-chr15-6603628-2	chr15	6603128	6604128	+	830.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155272)	TTS (NR_155272)	23781.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.58191907558845	5.43050958876383	5.28264427585211	5.35506484212163	5.1892692678254	5.21370465847224	-0.377462768150598	0.276577353537122	0.674003097641857
Merged-chr18-65694343-2	chr18	65693905	65694905	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3863.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.01514773590961	8.23200928213343	7.71757493559024	7.67945100713789	8.03754779238708	7.55000328728378	-0.32849905090614	0.215256456621224	0.608619363299426
Merged-chr5-31699651-3	chr5	31699142	31700142	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	1592.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.92904163571612	5.34419587285685	4.98572862864609	5.55939511936556	5.27691153985658	5.41905634196621	0.6239578360213	0.0969709414702565	0.415230449663293
Merged-chr13-81711088-4	chr13	81710645	81711645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028372)	promoter-TSS (NM_028372)	-132.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	5.8933266554004	6.20233336841339	6.0299143319117	5.84610449188257	5.8981646839074	5.54033544580879	-0.469069363330325	0.141307487532667	0.502088710505516
Merged-chr2-164961225-2	chr2	164960772	164961772	+	695.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355481, intron 1 of 24)	intron (NM_001355481, intron 1 of 24)	426.0	NM_001355480	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	2.92120126791722	2.54722267748942	2.80076032730036	3.36219052872368	2.84169752877761	3.18312891740886	1.8109121448104	0.0234426049063402	0.179399638466546
Merged-chr16-50396380-4	chr16	50395860	50396860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36029.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.42182077872121	5.42486011700981	5.2697753171563	5.50234595489093	5.34491433296796	5.30120422404542	0.0141352891093808	0.96675613002239	0.992349609766636
Merged-chr4-102506779-4	chr4	102506282	102507282	+	762.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-63278.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.79587997318888	3.98196549926361	3.69753898104201	4.03803205523117	3.77228043191066	3.76936961212859	0.092679483335644	0.862674763316889	0.968083292979043
Merged-chr9-66511844-4	chr9	66511343	66512343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175206, exon 2 of 2)	exon (NM_175206, exon 2 of 2)	2750.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	8.529865323614	8.95910525255027	8.22644700710092	8.3047433569304	8.796371888604	8.05020803716861	-0.253456206094508	0.397708880454354	0.774593722474986
Merged-chr16-95837353-2	chr16	95836853	95837853	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	61360.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	2.92942136342967	2.8518818267713	2.74991502536056	2.89211420953357	2.86987712812003	2.94811801820437	0.256657585593361	0.7145865455773	0.92601294778158
Merged-chr7-98337288-2	chr7	98336788	98337788	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-16080.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	5.29245404199047	4.86622785836516	4.69275694149627	4.68970256749888	4.68249337464553	5.12512824565487	-0.318287047521122	0.466731133457743	0.817646675637448
Merged-chr3-79178232-4	chr3	79177746	79178746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32371.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.71417167954787	7.97251916275222	7.88519082740091	8.0318895662943	8.12865371112461	7.98003072421812	0.269645974779374	0.218557426845809	0.61273880821229
Merged-chr14-21707231-4	chr14	21706832	21707832	+	939.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7244.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	4.3898033303415	4.32767876936127	4.00650125368613	3.91801369787515	3.65518045720987	4.02676953745748	-1.16723893190262	0.0252445828363254	0.188107712426566
Merged-chr15-77836316-3	chr15	77835829	77836829	+	943.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	5846.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.92917799382911	3.56634859327665	3.81933125779722	3.74195655878338	3.81615658855285	3.8885606469081	0.114470530713304	0.832234793676485	0.960616839788396
Merged-chr3-105052225-4	chr3	105051762	105052762	+	863.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	691.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.02367058149764	7.011456966692	7.1260391198923	7.4891570890355	7.94529529053731	7.31752161251633	0.845154554193637	0.00169648466575868	0.0271934301807837
Merged-chr13-92829057-2	chr13	92828557	92829557	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15730.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	3.17115805423898	3.08963605930701	3.622791626085	3.16107602337493	3.28355885306781	3.33691107317447	-0.183589696593897	0.780790969217989	0.946078518476608
Merged-chr3-97824904-4	chr3	97824420	97825420	+	899.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-56906.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.5557578436355	4.3542609628117	4.57602863498542	4.61830629556794	4.42952902754713	4.14152052911211	-0.1933780649236	0.674082800649801	0.911832513842353
Merged-chr9-66945989-4	chr9	66945475	66946475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311101)	promoter-TSS (NM_001311101)	-111.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	7.45282796274593	7.66680439385083	7.56946132486868	7.35091538000636	7.41209248153488	7.55972249286889	-0.185843129957324	0.419187520351726	0.788850311023746
Merged-chr6-39001310-2	chr6	39000810	39001810	+	937.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011539, exon 5 of 13)	exon (NM_011539, exon 5 of 13)	66276.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	3.11963106832665	3.16657526099672	3.45235640188573	3.26808592845901	3.10239013445151	3.71571529656433	0.514168927448973	0.443855160180585	0.803884349333946
Merged-chr7-110096704-2	chr7	110096204	110097204	+	729.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-25355.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	5.59364007696342	5.53988890907063	5.5369789765459	5.25777491574555	5.48137496601532	5.51467859868208	-0.259936031573995	0.432372762835745	0.797325290360352
Merged-chr11-48789361-2	chr11	48788861	48789861	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10999.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	5.21909479354185	5.33094639843731	4.93185944271049	5.33306619188633	5.36717960760736	5.60556309795081	0.495270754045238	0.175437688848464	0.555324655293605
Merged-chr17-5491563-4	chr17	5491089	5492089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.21415628975738	7.24342984943535	7.27018870998645	7.42720980554519	7.59067478342958	7.14391853523939	0.250855451738178	0.309338998070303	0.704972356009282
Merged-chr5-105626397-4	chr5	105625904	105626904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73565.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.40959587820633	7.48017849396823	7.16443776080703	7.30011191771503	7.74969944450766	7.23468662389177	0.141221915289664	0.599085173167303	0.880902871165758
Merged-chr7-90216122-4	chr7	90215615	90216615	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49317.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	4.54686311939594	4.59398856814921	4.35090677985372	4.63588393887923	4.59363996104919	4.63636346156908	0.268970397503513	0.523594697058144	0.848321894830579
Merged-chr9-77734653-1	chr9	77734153	77735153	+	617.0	f0_balb.idr	Intergenic	Intergenic	-19882.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.44476968096667	4.72681812132935	4.72366938072046	4.06211462810308	3.83064088994665	3.90464968265294	-1.95449916392337	6.76203622255979e-05	0.0020305142908941
Merged-chr6-124731675-2	chr6	124731175	124732175	+	662.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1479.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	5.28986726978877	5.22616225802583	5.8809662682475	5.45059187976374	5.66641936427678	6.25289979850479	0.619175340437538	0.130357147315617	0.482560431744706
Merged-chr8-40496489-1	chr8	40495989	40496989	+	551.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13990.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	3.51803422911037	3.91609687284039	3.64019425159593	3.49326876009167	3.1973890178773	3.55063991088244	-1.05351720338493	0.0857588567759239	0.387862549472479
Merged-chr7-127184223-2	chr7	127183723	127184723	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11854.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	4.79681832341924	4.30340694811972	4.15569839438309	4.51753910257168	4.68696965667612	4.51264452732893	0.290068670340357	0.546080155307603	0.85849711034619
Merged-chr11-110426989-4	chr11	110426492	110427492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	27890.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	7.40129930473634	7.42127778223152	7.38459740472655	7.51843231382504	7.77171797887784	7.4200378050804	0.269423663210519	0.252780761965784	0.65014161849805
Merged-chr11-99039979-4	chr11	99039488	99040488	+	744.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	3.33561446858261	2.90875775971657	3.14890866838057	3.08524843869571	2.86001575701855	3.04575522653195	-0.673356132902208	0.337163491004563	0.727088240495211
Merged-chr10-60281216-2	chr10	60280716	60281716	+	957.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	ID4_|SINE|ID	-3245.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.97696325057637	7.29353145766801	7.06049998732447	7.51876578569643	7.95515536646684	7.11864612011324	0.690531863295918	0.0205007538722361	0.164037573632178
Merged-chr14-29967716-2	chr14	29967216	29968216	+	666.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-664.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	7.46781211678834	7.57428075469855	7.53655580578615	7.71967361735816	8.00566780143841	7.4911991809457	0.346918357875667	0.15906476754578	0.531075402373377
Merged-chr1-170176962-4	chr1	170176454	170177454	+	943.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1990.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	4.27998935174645	4.39294378572082	4.45753907381261	4.33389699842329	4.41009807260573	4.44045183911052	0.0517319340124194	0.906077691709622	0.978582253699547
Merged-chr2-4882031-8	chr2	4881564	4882564	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 1 of 8)	CpG	500.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	7.27467613581445	6.99411051764535	7.32353537535419	7.2711071242539	6.87536765772044	7.18842037665477	-0.126360045154517	0.631827242040596	0.895284049434373
Merged-chr7-81058895-3	chr7	81058396	81059396	+	929.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054085, intron 1 of 13)	intron (NM_054085, intron 1 of 13)	1296.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	3.53325374087172	3.55042666183379	3.53841303571647	3.30858185663447	3.12185859708316	3.08477857156441	-1.4777692543519	0.0196236930018737	0.159395572754775
Merged-chr10-98775024-4	chr10	98774538	98775538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139604.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.31895008551156	6.87819627187035	6.84717199546585	6.93481969666711	6.92971183656178	7.3960929609925	0.0897551119830789	0.757907794779079	0.939990934386311
Merged-chr2-167926844-4	chr2	167926413	167927413	+	869.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5414.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.41614315402444	6.5147262430018	6.95341339221458	6.63620974011623	6.60197699942912	6.71693647368279	0.0187533438504186	0.947658370924114	0.988008807662239
Merged-chr2-91100777-2	chr2	91100278	91101278	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4100.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	5.03576617173112	5.10452271093256	5.27878745045142	5.09017223096094	5.08068411727441	5.08461084105269	-0.105902240482864	0.769512345730382	0.943125565788486
Merged-chr9-106221685-1	chr9	106221185	106222185	+	651.0	f1_c57bl6.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-913.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	5.43369684861147	5.46275959937871	4.95993560053353	4.81081817280729	4.69461153168525	4.70066937640686	-1.24684770490299	0.0016318392251676	0.0264218871857843
Merged-chr4-148042218-3	chr4	148041711	148042711	+	842.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 2 of 12)	intron (NR_027809, intron 2 of 12)	1022.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	5.35620321383313	5.7817824016081	6.06511357853832	6.04401565995166	5.8990706643036	6.16589379796459	0.492650159144279	0.155402149181643	0.52509823972611
Merged-chr3-59204335-5	chr3	59203798	59204798	+	720.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	6584.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.79580591342083	4.46059705069329	4.8754082757541	4.60830435289393	4.7355756955229	5.00703647693508	0.163516217749969	0.701932122784602	0.921616258659442
Merged-chr18-23955885-2	chr18	23955385	23956385	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027007, intron 1 of 3)	B1_Mur2|SINE|Alu	1197.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	3.39945911919937	3.46129983073792	3.02887846513089	3.40962899261348	3.38101570320861	3.62794060307084	0.596822079179045	0.367856189214535	0.752904456933217
Merged-chr17-63871436-2	chr17	63870936	63871936	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-6630.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.36064268756188	5.2888126257115	5.36949294150403	5.44476534821548	5.71865922679312	5.49293777017475	0.44006860870056	0.189805967510767	0.575875111928382
Merged-chr11-79293186-4	chr11	79292689	79293689	+	925.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38494.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.5982419386134	5.45711654992841	5.28088442076052	5.32252028614117	5.15584180048778	5.58053309820383	-0.210362369598552	0.555771359568247	0.863384923769738
Merged-chr14-19417855-4	chr14	19417361	19418361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	184726.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	8.7750155365388	10.5686928413918	7.91310004217288	9.60773147727282	9.59451136191581	8.21474170952579	-0.408985300016049	0.705495957743917	0.922807734235284
Merged-chr5-100501437-2	chr5	100500937	100501937	+	867.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-798.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	5.39028222059579	5.44113311560535	5.22988825407567	5.30594553962033	5.59740836380722	5.22650556185369	0.0719895663735977	0.83900407216088	0.96266979462434
Merged-chr13-93189535-1	chr13	93189035	93190035	+	726.0	f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	PB1D10|SINE|Alu	2882.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.77696274767003	6.19561371383299	6.08641819478609	6.35392890350421	6.73729958558434	6.48458536649382	0.845022437593892	0.00562311376682943	0.0665843247915672
Merged-chr5-144254153-1	chr5	144253653	144254653	+	687.0	f1_balb.idr	intron (NM_001163709, intron 1 of 2)	ID_B1|SINE|B4	-1072.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	3.83516664209289	3.68622507761831	3.97993115301254	3.91817116555644	3.87524902151259	4.38633934781091	0.715591268534328	0.183863797395466	0.567257651230328
Merged-chr2-156203282-2	chr2	156202790	156203790	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	6643.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	3.89269874791069	3.6373266419328	3.73008364630575	3.53832597818699	3.38704601959505	3.84871207968966	-0.557948819933108	0.336011584736846	0.726090328603253
Merged-chr4-147417319-2	chr4	147416799	147417799	+	933.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-135978.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.15762165160519	3.54939563035691	3.65814205074389	3.33137404547133	3.52936352246125	3.82191912478258	0.364540916270343	0.569314688956873	0.8688875602138
Merged-chr2-52762719-4	chr2	52762255	52763255	+	887.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20606.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	4.91734691045653	5.0510798629857	4.94624278783665	5.19875265092039	5.48731025323873	5.08570597564784	0.635912032248701	0.089172363053967	0.396719990642918
Merged-chr6-37732524-4	chr6	37732010	37733010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138301.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	4.6686901148441	4.71476500363364	4.96381372193103	5.24767168332515	5.4422554725639	5.06506806915268	1.05748740063661	0.00594723403262035	0.0693368991713989
Merged-chr4-107922982-2	chr4	107922482	107923482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	B1_Mur3|SINE|Alu	607.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	7.90390668465137	7.9935709729842	7.67607754991485	8.07031645484206	8.25498255893935	7.57410584422872	0.196593820305039	0.461611339445157	0.815078438429518
Merged-chr17-34639757-4	chr17	34639268	34640268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5115.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	6.38531682659265	6.27560689497569	6.33094038249367	6.62261642841924	6.49686784563464	6.55560251490716	0.367676371864828	0.164307607326424	0.538727547224194
Merged-chr11-97838426-4	chr11	97837928	97838928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2352.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	5.37775900226203	5.10046662072725	4.99465007361846	5.70854834267399	5.60225799814286	5.24563563375398	0.714828026463438	0.0542231856188309	0.299052351625352
Merged-chr13-35953115-3	chr13	35952618	35953618	+	940.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14788.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	2.75659839026667	2.71123221407518	2.87424355680917	2.58989222005837	2.68444963269875	2.76799181435389	-0.52602239820683	0.476353443327916	0.822520021424582
Merged-chr3-69171334-4	chr3	69170803	69171803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40070.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	5.27673969083495	5.25915778904275	5.19973672321056	4.97848960176614	4.96852806594674	4.78895774224599	-0.685570555431355	0.0617016255583951	0.322289319489199
Merged-chr11-87471614-4	chr11	87471105	87472105	+	977.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	44014.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.24559097211327	4.9624033800915	4.83702437197159	5.07085291639557	4.90124861697701	4.94202666152447	-0.136075738293474	0.725909776481704	0.929743505822386
Merged-chr14-70766771-4	chr14	70766324	70767324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023045)	promoter-TSS (NM_023045)	-196.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	6.14134785712138	6.04910119452019	6.33693735978485	6.6434440911591	6.27857843639267	6.21678488663786	0.370544721276655	0.214248469923343	0.607441279998006
Merged-chr8-124926893-1	chr8	124926393	124927393	+	637.0	f0_balb.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	22361.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	2.87245539717828	2.92997909507284	3.04320458951813	2.68969099564449	2.41863601714344	2.82398179872139	-1.64762532985104	0.0440073251824209	0.263929761696618
Merged-chr3-9341059-3	chr3	9340557	9341557	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62021.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.30692397841114	4.48285759444685	4.42829138354422	3.41714617665556	3.41223538427914	3.50902607293608	-3.4035363040202	4.39344935883177e-08	3.45203148488833e-06
Merged-chr17-71020741-3	chr17	71020235	71021235	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 1 of 36)	intron (NM_001083934, intron 1 of 36)	1178.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.89871415417267	3.84148339826565	3.42788401094247	3.61470472242293	3.80230516235496	3.73130034887166	-0.0897076263453172	0.876971092446229	0.971475057279973
Merged-chr4-107922579-2	chr4	107922079	107923079	+	994.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1010.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	6.57735791156858	6.23161588072745	6.20065255365797	6.86371700493658	6.61643496301031	6.09981269103111	0.356182391010827	0.276709393266011	0.674041208769616
Merged-chr9-21135704-4	chr9	21135192	21136192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4417.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	7.20832342741204	6.75933787439985	7.16816774347403	7.45953832263345	7.52217598718956	7.0307331195594	0.456849039150236	0.102543291488471	0.427066706837844
Merged-chr5-65561294-4	chr5	65560812	65561812	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310618, intron 1 of 4)	RLTR26_Mus|LTR|ERVK	24067.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	5.20110826304917	4.92003627098286	4.60155621944606	4.92042428864919	4.77965700676215	4.87642776230735	-0.188907702852341	0.649165350214425	0.902118776529041
Merged-chr12-102448420-3	chr12	102447851	102448851	+	816.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8538.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.65955708302224	4.78237983410786	4.61342937517466	4.53985462197429	4.53060026916684	4.63932359648774	-0.30072365374425	0.46371655932839	0.816038286358001
Merged-chr7-38107651-4	chr7	38107141	38108141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-151.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	7.32878393933541	7.54268027212209	7.23012194895622	7.61046026048968	7.36746887759504	7.12227691495845	0.0130604584428007	0.959776352288213	0.990242512723989
Merged-chr10-81367439-2	chr10	81366939	81367939	+	771.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019757, exon 14 of 14)	3' UTR (NM_019757, exon 14 of 14)	-1619.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	2.74360537696688	2.63817968305525	2.94962200784489	2.70699026747761	2.70332138314138	2.78861943081732	-0.242647436508398	0.742103450951131	0.935108337322314
Merged-chr2-69635214-4	chr2	69634715	69635715	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12040.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	4.23679851766079	4.0004246854938	4.1369686876597	4.54021947644699	4.47692627499214	4.05452062002957	0.688439295567561	0.157968220083299	0.52951777209407
Merged-chr4-106912299-2	chr4	106911813	106912813	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198438, intron 1 of 16)	CpG	843.0	NM_023672	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	2.58531058084819	2.31647147103886	2.7084037362727	2.36248750660243	2.14352920947523	2.27551104578581	-1.92075453857175	0.036956868830301	1
Merged-chr8-94037123-4	chr8	94036622	94037622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	-76.0	NM_177767	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	6.48388983700858	6.4670268951626	6.51183962052711	6.4970296077268	6.49892672724797	6.68640831770546	0.114418660423257	0.662264776826248	0.906707526056423
Merged-chr10-80679413-2	chr10	80678913	80679913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3120.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	7.16973775858161	7.29599433348086	6.96679970064729	7.44396682911839	7.5771045187473	7.06748952272237	0.345559433828261	0.193247893571539	0.580413324007387
Merged-chr6-108902360-4	chr6	108901837	108902837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	73696.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	4.2432030323275	4.53977835016654	4.59727512631002	3.97024819943932	4.09887095869136	4.06041705424746	-1.14490979698177	0.0171162002806406	0.145594438044525
Merged-chr11-46460885-2	chr11	46460385	46461385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	5954.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	4.39168131204837	4.14669484483746	4.375988168688	4.16007000957957	4.1431704432671	4.35816982058638	-0.242359461465947	0.602357338426967	0.882303107092216
Merged-chr13-19395304-4	chr13	19394799	19395799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347485, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	514.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	7.89609882984542	8.13608708844034	8.02731972807328	8.04675885866189	7.9442122664151	7.96507330063376	-0.0545752021997882	0.799940399497463	0.952387940325157
Merged-chr11-74994308-4	chr11	74993811	74994811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	68439.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.04636225895775	6.82546643815327	6.74052670975019	6.82502174384158	7.3053948918386	6.61147541322339	0.124746398130718	0.677826969383932	0.913193006516923
Merged-chr5-142904020-2	chr5	142903520	142904520	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 5 of 5)	intron (NM_007393, intron 5 of 5)	2734.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.25972794179251	4.24086520733237	4.35113021125166	4.40208635970836	4.28139316909021	4.58097609883193	0.359470539319282	0.423647929827086	0.792082736807957
Merged-chr4-133690442-4	chr4	133689926	133690926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 11 of 19)	intron (NM_001080819, intron 11 of 19)	-17260.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	6.39239520178453	6.54403573374907	6.0675362209539	6.4431875339383	6.79750873933136	6.40948711369849	0.340280163690044	0.260994234617071	0.658521360261207
Merged-chr4-136172192-4	chr4	136171695	136172695	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177733)	promoter-TSS (NM_177733)	-79.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	5.05638396321767	5.04966246524305	4.49648630094333	5.15397383203558	5.49233134223955	4.92424943690033	0.663286832832235	0.130821224970926	0.483397880606654
Merged-chr8-36936546-4	chr8	36936071	36937071	+	824.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	15871.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.53602092861816	4.42741231666623	4.64224873608888	4.55791240195258	4.75075371230123	4.74626049230145	0.378839634290611	0.362580908057511	0.7480937177279
Merged-chr11-31899220-3	chr11	31898735	31899735	+	574.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	28295.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	5.76175716243505	5.66345272983688	5.71471559773955	6.21178812711321	6.11402227213956	5.93118002759064	0.674646688684377	0.0247593133510031	0.185936186399843
Merged-chr9-108002058-4	chr9	108001579	108002579	+	966.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-569.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	8.33212673938301	8.47472949416959	7.84283768871496	8.11653743616437	8.42672277638786	7.73525313805315	-0.165967141574649	0.563916916102722	0.866014520598636
Merged-chr12-3365780-2	chr12	3365280	3366280	+	998.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008445, exon 1 of 8)	5' UTR (NM_008445, exon 1 of 8)	648.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	4.01475972409223	3.83960553870614	4.19539059215157	4.50942014232383	4.35312533217662	4.21785616134443	0.987130553490713	0.0412892897843378	0.253793249935375
Merged-chr5-115536874-2	chr5	115536374	115537374	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	RLTR18|LTR|ERVK	-22593.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	4.22848085107212	4.12553667662349	4.32830801651853	4.1805213966612	4.11969629730937	4.17335274860901	-0.18993815746157	0.682779671912266	0.915212496624716
Merged-chr19-12013411-4	chr19	12012916	12013916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23324.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	8.8131810163472	8.73113133193838	8.4067767000988	8.75942208951731	8.92247666867472	8.2376551748528	0.0184218684936973	0.944243936753987	0.98760473870349
Merged-chr14-14702091-2	chr14	14701602	14702602	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-923.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.15666599472052	4.09872609468227	4.19088381316709	4.2350589915871	4.19720817962219	4.21305838515909	0.189837043060566	0.680679781218474	0.914386323043327
Merged-chr1-152813855-4	chr1	152813380	152814380	+	949.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 3 of 15)	RLTR28|LTR|ERVL	13727.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.60055471512366	4.56562346957784	5.05905055737839	4.47453481117025	4.77799640712331	4.8939052169612	-0.0574116048771693	0.896481060444841	0.975838835430135
Merged-chr10-117285133-4	chr10	117284632	117285632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2860.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	5.49496271670604	5.32939471948771	5.56204794602346	5.54370901605245	5.5573204328239	5.72874620879952	0.279018882791977	0.395630868938256	0.772943257633586
Merged-chr19-56727357-4	chr19	56726843	56727843	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4971.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.84451378931408	6.83164865051293	6.78570780167039	6.77149103873486	7.01033580128109	6.84423719598924	0.0965233793189983	0.699573999789345	0.920619136555148
Merged-chr4-128971263-4	chr4	128970762	128971762	+	951.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8807.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	2.91729360320483	2.95951918519881	3.02159124821679	3.17106280027039	2.82171988331781	2.97447363785587	0.141841346505784	0.837813034279887	0.962251281434133
Merged-chr6-125447438-4	chr6	125446928	125447928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47332.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.73849771997749	5.52452837995646	5.6313976417233	6.0910113502757	6.17487028805192	5.90501019323729	0.774567548735633	0.0119374169533807	0.113830917929968
Merged-chr15-9138383-3	chr15	9137851	9138851	+	781.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	L2a|LINE|L2	2103.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	3.92846678570322	3.96941935924154	4.07077535761401	3.96015246784788	3.85558059764955	4.26905596332334	0.12355644588017	0.80780661015672	0.954568947211821
Merged-chr4-53086851-2	chr4	53086351	53087351	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	73044.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.89582267808142	2.81835223272898	3.0989321454565	2.99148049808433	2.85683770214484	3.33068845259623	0.592944093234552	0.404993322020395	0.779908884056912
Merged-chr1-136134179-2	chr1	136133679	136134679	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	2789.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	5.8310869087643	5.58203893352224	6.38008785654575	6.56609687600342	6.55804659819646	6.82687942043161	1.14511035836865	0.000676286675515383	0.0133347065631005
Merged-chr13-100730993-4	chr13	100730484	100731484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009874)	promoter-TSS (NM_009874)	-42.0	NM_009874	12572.0	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	7.12039579050543	7.25396207451932	7.05594787393775	7.19279734008102	7.63275948458871	6.91374072152255	0.21841408629602	0.444283902294739	0.804143628616024
Merged-chr8-117502320-3	chr8	117501794	117502794	+	622.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	4019.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.31577647121502	2.69869240335951	3.11821437300325	2.91994028838769	2.95716455252367	3.1331991441705	-0.29649907484091	0.692620964424667	0.91870248759071
Merged-chr19-11604819-4	chr19	11604322	11605322	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026835)	promoter-TSS (NM_026835)	-18.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	5.92968992363573	5.8823432421016	6.07048903827315	5.81914757116269	6.08668550169739	6.15173612076833	0.118577183645052	0.694577765802679	0.919210273513843
Merged-chr12-103437832-4	chr12	103437332	103438332	+	876.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194067, intron 4 of 5)	intron (NM_194067, intron 4 of 5)	3643.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	4.39553279556686	4.57965815062619	4.81769181163854	4.57550501152389	4.20895882703302	4.98065283920229	0.0321596702220345	0.947139582916322	0.988008807662239
Merged-chr2-84670035-2	chr2	84669535	84670535	+	673.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037279, exon 3 of 4)	exon (NM_001037279, exon 3 of 4)	673.0	NM_001033166	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	4.69616136676454	4.61861670554031	4.73261501562709	4.71442866069724	4.75830509347827	4.63944525554855	0.069701411656196	0.861924681711975	0.967996224966109
Merged-chr11-86487082-4	chr11	86486565	86487565	+	894.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029788, intron 3 of 8)	intron (NM_029788, intron 3 of 8)	2408.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	4.60604985380851	4.54593398853872	4.669742569197	4.51153924456287	4.24093918513304	4.61939061497534	-0.3729915507495	0.392364980645056	0.771172125304963
Merged-chr5-105718480-4	chr5	105717970	105718970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	17660.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.21188813670663	7.43262323110878	7.13095556437132	6.79053742520046	6.95069481301142	7.00698780083137	-0.538348199431266	0.0311842639543045	0.213920998864105
Merged-chr4-86612142-4	chr4	86611643	86612643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173400)	promoter-TSS (NM_173400)	-88.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	6.67205715095256	6.96543729423173	6.76440263462991	6.57941174444926	6.99189777508591	6.31590753766793	-0.206924323637785	0.496466395796164	0.833052561713032
Merged-chr4-40700453-4	chr4	40699932	40700932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	2484.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	6.72192204241146	6.50470297314024	6.53061452870907	6.53682180106926	6.33730896094639	6.28653568606548	-0.321809637482519	0.238584251469233	0.635336330131045
Merged-chr15-13391103-3	chr15	13390591	13391591	+	628.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-217416.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.86214914741386	5.27397687385449	5.11511821237152	5.05228474316751	4.8987062496377	5.04336637967066	-0.215329412406633	0.575078736750189	0.87094931637326
Merged-chr1-193173109-3	chr1	193172609	193173609	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-360.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	6.6101245888294	6.77002326938877	6.68738114799257	6.61171396326149	6.89199357124955	6.71418337974505	0.092779747711774	0.722066591600071	0.928665377061702
Merged-chr2-121171584-2	chr2	121171084	121172084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	416.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	6.76624491126773	6.86413490752974	6.51675608410863	6.53428038105095	6.7560974414985	6.29974039892452	-0.27639511204878	0.334551686318399	0.725027073042024
Merged-chr18-12236462-4	chr18	12235949	12236949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-63.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	7.31063994648161	7.53569394652373	7.31339346267718	7.4297672999763	7.80879775757999	7.23969144603894	0.194247338729918	0.463575282461288	0.816000763746035
Merged-chr16-91743207-4	chr16	91742687	91743687	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13816.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.83311329778934	4.62275012929358	4.8595085000104	4.64046031111602	4.45845454461737	4.25076527916902	-0.735358408345168	0.0921706299896308	0.404415407096457
Merged-chr7-127922546-4	chr7	127922038	127923038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360699, intron 6 of 10)	intron (NM_001360699, intron 6 of 10)	7575.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	7.89147641291777	8.00793192082526	7.78746865408802	7.53902095526993	7.872109121281	7.3703788621732	-0.401548806023755	0.10721383126441	0.437027799532112
Merged-chr6-117816432-4	chr6	117815911	117816911	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24770.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	5.50178052049152	5.6976343120721	5.84622870151164	5.11087454025176	5.16061239320075	5.00722299393694	-1.13955871880192	0.00122701704938718	0.021133851096131
Merged-chr6-124834239-2	chr6	124833739	124834739	+	841.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013530)	TTS (NM_013530)	4063.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	6.43489046422944	5.88084562222118	6.1429471372516	6.0193413193196	5.81645024457247	6.05174380379078	-0.368812780496977	0.250948882970198	0.64829625167914
Merged-chr7-24507526-4	chr7	24507042	24508042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110958, intron 1 of 2)	CpG	455.0	NR_110958	232969.0	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	5.3412283863366	5.25138452816072	5.00752657444331	5.15725169820749	4.84351272603792	5.33673423627333	-0.206647115793518	0.593600648403394	0.878585555379942
Merged-chr5-53195041-4	chr5	53194556	53195556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172710, intron 2 of 23)	MIR3|SINE|MIR	18396.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	5.38933958062262	5.41873762297693	5.4682456396134	5.04287732521227	4.83479635051162	5.06263636503075	-0.925702253369364	0.0094586027114916	0.0967194161768231
Merged-chr11-114965653-4	chr11	114965155	114966155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5238.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	7.05742722476432	6.65599301004734	6.70223836020866	6.85310681313496	6.7604969633095	6.72882653369154	-0.0629232693218835	0.814986802842054	0.956370078970016
Merged-chr11-78178045-4	chr11	78177557	78178557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-92.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	6.50734274635295	6.57555373569912	6.1231965491475	6.37416513471223	6.3825813199809	6.16162934623915	-0.184051870602791	0.530424336210909	0.851133895814045
Merged-chr4-135885912-4	chr4	135885402	135886402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9287.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	4.6856029228687	4.02729199497761	4.19642418025151	4.54776581301667	4.25092487349804	4.26643695123673	0.0534703236794027	0.916360673857434	0.981243905880233
Merged-chr11-52360196-2	chr11	52359696	52360696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011694)	promoter-TSS (NM_011694)	-666.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	7.84384149534392	8.20761260861083	7.68991894509855	7.73323496970698	7.92253616945578	7.48685967928779	-0.293410819786918	0.262884897871418	0.660891219379409
Merged-chr19-6077968-2	chr19	6077468	6078468	+	901.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-781.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	4.31450246146337	4.06247139415004	4.20199231068505	4.34704532358606	4.39720741784183	4.27058916587016	0.395095060524489	0.390235117373161	0.769547406615622
Merged-chr7-120150419-4	chr7	120149919	120150919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5128.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	4.14038616519427	4.06089904598772	4.00424840396999	4.25300574775114	4.09347915033457	4.17017623151797	0.280227539177065	0.555455777064291	0.863239342468185
Merged-chr4-128669830-2	chr4	128669330	128670330	+	996.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	L1MEf|LINE|L1	15128.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.08254290862606	5.45171358113398	5.30814965538293	5.12818632176875	5.36541475260852	5.30945375335346	-0.0338485232269216	0.925529869276084	0.983222594114141
Merged-chr1-85276705-1	chr1	85276205	85277205	+	996.6666869999999	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-6139.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.49927686954376	3.52848542898434	3.77754035915614	2.98525674609072	2.82761244484231	3.8007966126062	-0.981537314570137	0.497787864396344	0.833791434757709
Merged-chr8-82984169-2	chr8	82983669	82984669	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	120813.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	4.10731252000744	3.70486414497755	3.84167521350799	3.89689122563848	4.09675407966865	4.15318590874257	0.457503430614061	0.383406941196319	0.764889316280541
Merged-chr2-32448659-2	chr2	32448159	32449159	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-1798.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	5.40662917151446	5.14784364561884	5.18466040148448	5.45106802369951	5.59642346254865	5.2833112264868	0.402449470956071	0.253531838464181	0.650896916687683
Merged-chr6-149324029-2	chr6	149323530	149324530	+	549.5	f0_balb.idr|f1_balb.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	14616.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.44369497083808	3.30338085858002	3.50617482297317	3.37617248964083	3.58098828014263	3.46857152524977	0.245876658205994	0.676419960933246	0.912525597578286
Merged-chr17-28738145-4	chr17	28737648	28738648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31169.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	5.95267481197651	5.76977158456706	5.77331671113239	5.88745336143775	5.71890933499605	6.02427338898064	0.0621186296833186	0.841437872335923	0.962939422648193
Merged-chr17-6107500-4	chr17	6106957	6107957	+	970.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001103181, intron 1 of 13)	intron (NM_001103181, intron 1 of 13)	627.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	6.81900949418178	6.55827825212759	6.43399680496987	6.67844576467905	6.1128298805885	6.18623433709554	-0.429334112686621	0.169790597488019	0.546873733675896
Merged-chr2-101886825-3	chr2	101886269	101887269	+	805.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029635, intron 1 of 5)	intron (NM_029635, intron 1 of 5)	507.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	6.23143262079265	6.70550782488125	6.10701315046643	6.46010701321632	6.67141085199522	6.04808554685414	0.0737463554078777	0.82681992131699	0.959278302444461
Merged-chr17-34934981-4	chr17	34934481	34935481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	3728.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	6.22265702392983	6.21984194879866	6.46834622922948	5.9639715777956	6.40635818259021	6.24921033619267	-0.12619688337494	0.67434746891951	0.911841916826811
Merged-chr18-62191683-4	chr18	62191190	62192190	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11590.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	7.19923453857815	7.15743630874943	7.13388481628418	7.07465043890482	7.37994033396182	7.03476837480563	0.0265933299649686	0.914654659219652	0.980912729144991
Merged-chr15-78595001-4	chr15	78594497	78595497	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-2050.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.17491427186891	3.79979682460106	3.69508407542237	3.96705040594934	3.79999111021128	4.07387135816191	0.0954851571310895	0.860685227796545	0.967593768027322
Merged-chr17-79896107-4	chr17	79895585	79896585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286647)	promoter-TSS (NM_001286647)	38.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	7.68260605741138	7.21702906448888	7.00588760523716	7.48264073704995	6.92219547367021	7.15775141544094	-0.198648122795179	0.512273870521068	0.841860053306022
Merged-chr15-38650545-4	chr15	38650043	38651043	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11361.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	6.07151658662321	6.22045146573568	6.19860061443261	6.06279441921252	5.58267750730666	5.63280548326246	-0.672160419096148	0.0364549153988087	0.234929886177968
Merged-chr18-67736996-4	chr18	67736488	67737488	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12367.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	3.2768102717152	3.64810698098372	3.7403127045202	3.72640838723728	3.5626430866836	3.7600648373	0.400274095018546	0.497938238087839	0.833827995901319
Merged-chr2-90748148-2	chr2	90747648	90748648	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	B2_Mm1t|SINE|B2	2778.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	3.2570126150981	3.0911944115231	3.04265639097652	3.17049776752995	3.40430800648685	3.40255282562055	0.807552081422575	0.211570480214378	0.603945120913907
Merged-chr14-66272264-2	chr14	66271751	66272751	+	686.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	8801.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.07824219442029	3.02020326783387	2.94894992100841	2.81792545116357	2.70361116822005	2.77400801026146	-1.33170843042514	0.0641110436515259	0.32988384887491
Merged-chr16-94599547-4	chr16	94599061	94600061	+	721.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11858.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.91379678076353	5.58516602099911	5.97495269212846	5.78978288072728	5.88970744866074	5.28016744381925	-0.245625872029433	0.494709182697724	0.832098209532918
Merged-chr6-29216549-7	chr6	29216066	29217066	+	996.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302933)	promoter-TSS (NM_001302933)	-202.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	7.55805399573501	7.73946721850184	7.54121536772864	7.59364632376619	7.65143641030674	7.26898523615486	-0.137792455090886	0.568526221480071	0.868604344991255
Merged-chr9-94695144-1	chr9	94694644	94695644	+	573.0	f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	25252.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	3.73543455114668	3.52406967114746	3.7319056297286	3.57567437500834	3.61896424695424	3.48113206335762	-0.351531040851812	0.532419867789984	0.851971173271146
Merged-chr6-100381291-4	chr6	100380783	100381783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93925.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.93783986814262	2.82981136913998	2.821595726269	2.81035652056279	2.82757449470101	3.07165852565441	0.182024972142661	0.79655408713646	0.951430675491237
Merged-chr11-98742678-3	chr11	98742118	98743118	+	808.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	833.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	5.45353179038601	5.44023515371754	5.98633305816141	5.69011442792716	5.49820484940621	5.47792261859635	-0.146630264499987	0.681098219627813	0.914599647187446
Merged-chr6-76269143-3	chr6	76268647	76269647	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-973330.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	5.8556698963178	5.86835353962512	5.87835898843132	5.23121096346219	5.35039838390706	5.30628280808088	-1.06722873150812	0.000912392827210547	0.0167886736768101
Merged-chr18-34220876-4	chr18	34220325	34221325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007462)	promoter-TSS (NM_007462)	-159.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	7.88003471050203	7.77979098932997	7.66288337581481	7.73803852606351	7.51896927718733	7.47340098382323	-0.285008983321482	0.213917166282117	0.607060454009152
Merged-chr6-124732041-1	chr6	124731541	124732541	+	670.0	f0_balb.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1113.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	5.75460002754216	5.52077166258546	5.74785603896736	5.60596436212958	5.80531506662815	6.06075999434094	0.280529388167999	0.39333244363827	0.771515439837752
Merged-chr1-151035140-4	chr1	151034653	151035653	+	799.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41718.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.2839814647265	3.05210474312969	3.46731327850356	3.43064749109795	3.20597989229057	3.14403914526367	-0.0226238694694225	0.972399283154792	0.993868590220018
Merged-chr14-52141402-4	chr14	52140891	52141891	+	930.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30488.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	4.40008658094369	4.63291576955839	4.11540513384803	4.73326147541246	4.61039498951481	4.60921642992142	0.584290175953938	0.202549250255975	0.59252027125208
Merged-chr5-99220579-4	chr5	99220036	99221036	+	894.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	32391.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.24715340513957	5.05737012104724	5.2991178413087	4.91483883369763	5.10778333256292	4.96605827658235	-0.410081109718846	0.26816702420175	0.665308311477243
Merged-chr2-166976555-4	chr2	166976070	166977070	+	949.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-11853.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	6.4456060182822	6.70135927079502	6.49338904643605	6.47890610384757	6.64911442763359	6.62163972910592	0.0486429857011715	0.855811410605115	0.966258544020232
Merged-chr17-34936183-1	chr17	34935683	34936683	+	542.0	f1_c57bl6.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	4930.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	3.10731134646021	2.93949633872916	3.00310440060789	3.01433821408897	2.91021972936901	3.19055412086831	0.0813718077689561	0.904175366419812	0.978052728746017
Merged-chr7-118652819-3	chr7	118652281	118653281	+	916.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028930, intron 8 of 17)	intron (NM_028930, intron 8 of 17)	19045.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	3.13410652839045	3.11695676503632	3.07135476506786	3.36067156473174	3.43767386442803	3.48881211592602	1.3174366387916	0.0357535994756483	0.232435134274611
Merged-chr16-18342989-5	chr16	18342571	18343571	+	857.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	839.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	4.41097983033129	4.35824255108558	4.19521415649719	4.23357140505939	4.19834042307871	4.5633397579023	0.00216858091569787	0.996277630411688	0.998961028701257
Merged-chr7-90040659-4	chr7	90040166	90041166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	11507.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.35892805510141	8.40448229711667	8.30237148462056	8.1484576912178	8.55709009449473	8.22534787377684	-0.0390331806906922	0.862927673036622	0.968145160359081
Merged-chr9-13511205-3	chr9	13510732	13511732	+	746.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79871.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.17399997530689	4.38622231827475	4.31717294656959	4.06837365897946	3.80069302947251	4.29875885926718	-0.664734577923733	0.184254409430247	0.567873209121859
Merged-chr3-103171711-4	chr3	103171251	103172251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	96.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	8.09190944661032	8.28099440422512	7.58958743315869	7.99027643733674	8.0993092694994	7.42798396462583	-0.20884599279463	0.482713306851577	0.825756592327344
Merged-chr15-59809495-4	chr15	59808974	59809974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14515.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.246944273957	7.15782841932217	7.28490828685734	7.29651564238583	7.77120134009831	7.38681360241501	0.416589642266268	0.10217037261353	0.42621511220806
Merged-chr7-66106824-2	chr7	66106324	66107324	+	951.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2691.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	2.35754026478208	2.43668953577759	2.464424456976	2.29761125246047	2.15702458764227	2.21045540156087	-1.38455047097019	0.113157610646005	1
Merged-chr4-109201333-2	chr4	109200833	109201833	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	939.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	6.41234655768964	6.55978495814691	6.14912516030627	6.0802672093291	6.33253911718334	6.33436359743892	-0.231824937405399	0.428692322402623	0.795420465213011
Merged-chr4-138913986-4	chr4	138913477	138914477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028453)	promoter-TSS (NM_028453)	-30.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	4.01942734350674	3.85434614808373	4.08027854710864	4.01624730271662	3.65646114245292	3.75240373061387	-0.523284449035536	0.324254646992358	0.717324268869843
Merged-chr9-57158277-4	chr9	57157786	57158786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025417)	promoter-TSS (NM_025417)	13.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	7.50651072017154	8.09220719586572	7.63245729542582	7.53108570646504	7.57923262288164	7.15333063388823	-0.49139065527558	0.0797796442880047	0.37356229021667
Merged-chr5-101765103-4	chr5	101764577	101765577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173370)	promoter-TSS (NM_173370)	-53.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	7.14762962807739	7.00629727604889	6.63072553625043	6.99694319381786	6.53046662164175	6.62000822234642	-0.344247351120845	0.24187619740663	0.638901451820922
Merged-chr8-71388456-3	chr8	71387941	71388941	+	873.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181418, intron 9 of 12)	MTE2b|LTR|ERVL-MaLR	-6489.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	3.83116872986721	3.96480641002551	4.48437668508418	4.00282684497131	3.84981874856504	4.31901193336798	-0.144813674268922	0.792501119359118	0.949977808464961
Merged-chr13-107763342-1	chr13	107762842	107763842	+	665.0	f0_balb.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75945.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	5.51456820143455	5.17496312670657	5.28470782158214	5.85586901455278	5.77363344768923	5.21029497994711	0.607136531787438	0.105231450106592	0.432934412878582
Merged-chr5-123079858-4	chr5	123079354	123080354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	3579.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	6.65944130668612	6.91261904353554	6.48691739912761	6.17480130804777	6.6486959388307	6.41518909832903	-0.43156015043495	0.147868005283796	0.513107343244259
Merged-chr2-128765685-5	chr2	128765164	128766164	+	747.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-52639.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.85674959212851	3.81382908340294	4.29503643204818	4.06949019552198	3.90263811001841	4.19405325374857	0.173319304883888	0.741220941793669	0.934789052786802
Merged-chr9-69453837-8	chr9	69453312	69454312	+	834.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007585, intron 1 of 12)	CpG	129.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	5.19663700260311	5.20250955858216	5.19939145532033	4.64239121767575	4.43793115339239	4.81661472474968	-1.28508150446664	0.00109680411787823	0.0193476525419571
Merged-chr13-93230743-4	chr13	93230227	93231227	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38310.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.15307094186099	6.16195976180298	6.40427407764451	6.40187045302054	6.45215107870447	6.27207541938736	0.244622931257423	0.380819397725993	0.762812239912963
Merged-chr19-56548044-4	chr19	56547517	56548517	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	105.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	7.38785324485278	7.61140533880854	7.30389887799542	7.27911573298543	7.57755905629312	6.92318413352427	-0.212536825292861	0.444379419983697	0.804158035358769
Merged-chr5-150118564-4	chr5	150118068	150119068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	99893.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	4.03585956185965	3.38673062277788	4.00739146499833	4.36259832058194	3.83714609252218	3.87688168604204	0.605810447932739	0.324511440350246	0.717544999689449
Merged-chr13-23760874-2	chr13	23760394	23761394	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013550)	TTS (NM_013550)	355.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	7.82684458363418	7.62146763391164	7.59336778696099	7.5517519547308	7.90490265773209	7.97523599631322	0.194579900807376	0.422835007231698	0.791567180556068
Merged-chr10-77391284-4	chr10	77390789	77391789	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 1 of 11)	L1MC3|LINE|L1	26984.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	3.15277496028349	3.27766358791901	3.23050661948863	3.07876578433314	3.06449745909347	3.18818906603818	-0.494115747467063	0.438273502450759	0.800471082837762
Merged-chr16-52094895-4	chr16	52094387	52095387	+	920.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	63338.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.64627818324207	3.45187546022154	3.53153202871634	3.65709910269395	3.68346220773612	3.76035020850874	0.529685362183564	0.33927204831565	0.729122178214163
Merged-chr19-6036361-3	chr19	6035849	6036849	+	931.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10227.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	2.6729119650288	2.56913942772504	2.72742949607912	2.69122885560803	2.55074712839582	2.54856666745098	-0.321957054653556	0.672758716294186	1
Merged-chr1-152539145-2	chr1	152538645	152539645	+	909.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	86072.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.49638050040817	5.36878703113805	5.35814806301772	5.42438566607062	5.57749085080018	5.67651796808627	0.282734718389731	0.393834936394952	0.771958960126358
Merged-chr12-73667769-4	chr12	73667287	73668287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	82991.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.58793697185794	5.82905681671607	5.8401293068744	5.7687875975628	5.93726772367867	6.06013583513763	0.302591507333439	0.333577334645777	0.724480655178686
Merged-chr11-80187107-2	chr11	80186617	80187617	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	RLTR30C_MM|LTR|ERV1	3245.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	2.27967837597556	2.29215495685965	2.52729071054103	2.76480162170426	2.29123648056229	2.60263833147848	1.20853123115977	0.163358155073102	1
Merged-chr18-23819365-3	chr18	23818866	23819866	+	847.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	15396.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.36796636959415	3.45774994648013	3.50637262874654	3.19591975979134	3.33418114775289	3.41649119682135	-0.491792452299165	0.413733648217666	0.785359020041643
Merged-chr17-5937665-2	chr17	5937165	5938165	+	722.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3615.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	3.61763202362114	3.44665646241988	3.71798525939391	3.68218732164397	3.68843267005822	3.78723749279361	0.428662669470297	0.436933271363658	0.799707503875008
Merged-chr16-92821820-1	chr16	92821320	92822320	+	572.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	4254.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.64259764453386	4.603499953928	4.06474573531648	4.34928952349821	4.08715790796093	4.42491233179455	-0.476391486033965	0.335842990019509	0.725971566610638
Merged-chr5-124038068-2	chr5	124037568	124038568	+	783.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-5808.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	3.96777188219778	4.23479107197057	4.1119074765696	4.03441424425275	4.12764178669909	3.93374552391416	-0.201675184966235	0.682640505915264	0.915155649724165
Merged-chr1-170510776-3	chr1	170510262	170511262	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 2 of 9)	MIRc|SINE|MIR	46348.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	2.62130275958951	2.64212305903875	2.80133525093987	2.5674026024667	2.53395401366487	2.69400465455766	-0.509725744241658	0.501514224932487	1
Merged-chr17-13660101-4	chr17	13659583	13660583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-100458.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	5.70863806168673	5.94546483229819	6.02525345442073	6.17155956753303	6.2672097146666	6.08609584716535	0.498721994131266	0.0938060179260428	0.408020484310726
Merged-chr11-75650574-2	chr11	75650035	75651035	+	830.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-974.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	6.56561820995388	6.56038311295942	6.42987907293157	6.53277098900784	6.78318469545055	6.66456663755648	0.228340618053973	0.386307351855042	0.767083384239079
Merged-chr3-103605851-3	chr3	103605352	103606352	+	839.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	29726.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	2.51106519300499	2.60205283602811	2.44092120536626	2.57415128887036	2.60190286563403	2.82853071271855	0.826765517079173	0.294648401460835	1
Merged-chr5-130001542-4	chr5	130001057	130002057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	1492.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	8.02919723862646	7.98175782017503	7.68491671089474	7.88133894205317	7.98221317034634	7.56548061827658	-0.11955353950166	0.625574137986284	0.892513881101067
Merged-chr11-115933594-4	chr11	115933102	115934102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020483)	promoter-TSS (NM_020483)	-57.0	NM_020483	57230.0	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	7.21223427957707	7.51211720266344	6.9730539130048	6.95739870820141	7.14161574245214	6.8998069846691	-0.378110443326864	0.160783036831238	0.533494234902646
Merged-chr1-131912161-2	chr1	131911661	131912661	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	B1_Mus1|SINE|Alu	1703.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	6.17456627934804	6.04449170161588	5.94781226017437	6.14669903413522	6.28525677580964	5.8027749039374	0.0758722087415206	0.806688982879409	0.954305371105249
Merged-chr2-167483757-2	chr2	167483257	167484257	+	887.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_170756, exon 3 of 3)	exon (NM_170756, exon 3 of 3)	-8888.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	5.16304517809937	5.09489881592564	4.9567166036802	5.04327479719238	5.27442392773125	4.86745828049696	0.0146157411543036	0.969494308580898	0.993164504846051
Merged-chr15-5144245-2	chr15	5143745	5144745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013367, intron 1 of 8)	intron (NM_001013367, intron 1 of 8)	384.0	NM_001355640	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	4.82148935566126	4.84990603945346	5.13604370699321	4.7560594026204	4.58852261695195	5.00753503252076	-0.340904917758407	0.405570060122292	0.780279107725129
Merged-chr5-74952912-2	chr5	74952412	74953412	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	3718.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	4.19514257317424	4.08881124340914	4.33889869918468	3.70365123944607	3.65275394496691	3.86328076238997	-1.46478014716699	0.00471761970401258	0.0588233164156571
Merged-chr2-181236409-2	chr2	181235909	181236909	+	705.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 7 of 19)	exon (NM_183162, exon 7 of 19)	5618.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	2.21499711790229	2.06995547071225	2.41264284785261	2.44591022125643	2.33624116153009	2.48727519545051	1.26953448090633	0.155821682460533	1
Merged-chr2-104687477-4	chr2	104687004	104688004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	24658.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	3.42050838820308	3.41636728426847	3.69289133339725	3.45123145223882	3.47828969514091	3.50565581633014	-0.111289180777718	0.848094495477781	0.964318271116593
Merged-chr10-81128641-2	chr10	81128141	81129141	+	697.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7630.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.52326894187315	3.56013754143785	3.42694433207036	3.57500802391922	3.65756835487211	3.60932864148844	0.383021570897862	0.495725051018538	0.832647936932283
Merged-chr12-80069343-4	chr12	80068835	80069835	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43678.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.68296116484326	3.36476122840131	3.52049918614049	3.48106044679493	3.56671513668891	3.5912007353884	0.0590065883388559	0.918830094708059	0.981844538421417
Merged-chr6-87546933-4	chr6	87546458	87547458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13699.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	6.39829193227714	5.88463446261564	5.67911220401622	6.43487213063001	6.72885133116432	6.04275528751969	0.675211873341463	0.0629904147876232	0.326581496270705
Merged-chr11-78983560-1	chr11	78983060	78984060	+	582.0	f0_c57.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1364.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	8.03114518382378	8.32427190207278	7.90058189790189	8.04646290145324	8.3021904078748	7.8404574643218	-0.0268803996824845	0.914665904551843	0.980912729144991
Merged-chr14-101561426-3	chr14	101560923	101561923	+	911.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	47768.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.72541377788419	5.01004039119214	4.85919384491157	4.8143657649791	4.80456342684549	4.46568977368113	-0.355547324233572	0.393000251002362	0.771429661681589
Merged-chr11-117334235-4	chr11	117333713	117334713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	1900.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.73086820584262	6.87967900546711	6.93181805585311	6.66718153173533	6.65567156441654	6.64534733591385	-0.297778941797463	0.23694783827074	0.633412320506677
Merged-chr7-110669604-4	chr7	110669104	110670104	+	849.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41947.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	4.63964183766002	4.62474958583366	4.33190148962186	4.39187834956155	4.61752828801092	4.57709556007935	-0.0362629021753163	0.933779616774535	0.985602489494737
Merged-chr9-65745626-4	chr9	65745120	65746120	+	940.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	RSINE1|SINE|B4	69072.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.56376812593547	3.51359321196402	3.25152853956495	3.25158278531902	3.10900687293141	3.32447085052912	-0.926331752346812	0.141253944803782	0.50206998031752
Merged-chr5-145233673-2	chr5	145233173	145234173	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028298, intron 2 of 3)	intron (NM_028298, intron 2 of 3)	1914.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	2.64896596601534	2.76568884631474	2.8428541719641	2.802962764933	2.85317592885297	2.6654744151503	0.149139336650163	0.839219961572723	0.962725890398731
Merged-chr2-59925427-4	chr2	59924856	59925856	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 20 of 35)	intron (NM_001001182, intron 20 of 35)	-42750.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	5.07306924484984	5.31215959148538	4.97306608485788	5.00159019954176	4.86813790502969	4.96492100372988	-0.413295762174873	0.273883251700992	0.671305269086912
Merged-chr5-67264282-4	chr5	67263798	67264798	+	812.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028975, exon 4 of 8)	exon (NM_028975, exon 4 of 8)	3733.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	3.47904436625223	3.83975236019651	3.85748349974471	3.43718364308007	3.83492965223406	3.8296600051496	-0.0655789427671372	0.910995859868628	0.980014266793567
Merged-chr8-13597020-2	chr8	13596520	13597520	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34559.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	4.46040694997307	4.24949072410387	4.47355270030799	4.34624968945044	4.02163197150889	4.89741729986981	0.172011502783632	0.738905165722066	0.934106252288505
Merged-chr13-41505878-3	chr13	41505348	41506348	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18488.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.70342951678085	4.92204241623309	5.21156713416852	4.71400216291515	4.54914124908447	5.21576214256391	-0.239608135104507	0.591627368110691	0.877710165381539
Merged-chr15-102204115-4	chr15	102203629	102204629	+	942.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289695)	promoter-TSS (NM_001289695)	129.0	NM_001358674	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	6.33269193145827	5.84543399936864	6.08357038934926	6.26667078558073	5.33265760097283	5.96468826406048	-0.332568849096257	0.389233586803811	0.769015431167891
Merged-chr4-150583680-4	chr4	150583225	150584225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	68449.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.47353969909503	7.76727145343843	6.93476450671409	7.43952898138735	7.72676625872848	7.12397608229906	0.0214090430901528	0.945642643932905	0.98796006280508
Merged-chr13-54566060-2	chr13	54565560	54566560	+	868.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-678.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	3.70879161403172	3.54658434163621	3.46493028520095	3.71484865570982	3.67270028606741	3.53700042573386	0.226237418459233	0.688770482335968	0.917235946766438
Merged-chr1-184260932-3	chr1	184260451	184261451	+	801.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	226570.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.06039958785919	4.00626879948353	4.04014297283016	4.32350884981021	4.1152843133778	4.06034995727377	0.394331878624215	0.411851323190568	0.784087422780413
Merged-chr7-107259378-3	chr7	107258889	107259889	+	990.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49944.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	3.41600599791222	3.61728302006225	3.61763377934703	3.15496659774098	2.98131074102674	3.19575400521154	-1.88884481462237	0.00384123552847561	0.0503994755613996
Merged-chr7-89178153-3	chr7	89177650	89178650	+	963.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	160637.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	2.86907192775145	2.7620191503045	2.83951726228909	2.75563629231877	2.5971361976451	2.72746927265246	-0.705447495915784	0.336298817019189	0.726311051846196
Merged-chr6-124931357-4	chr6	124930864	124931864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-24.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	7.60811707277335	7.3186305061632	7.1924390140617	7.44881670669646	7.40918340150257	7.20000525026697	-0.0438597526008728	0.861549682874448	0.967861544964734
Merged-chr15-78257911-4	chr15	78257364	78258364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13053.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	8.81842208586507	8.76188399629638	8.4915654077279	8.74524234639928	8.97691464887724	8.53007360021401	0.092370478075986	0.689962728683771	0.917567723252397
Merged-chr5-88563643-2	chr5	88563143	88564143	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1397.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	6.26254525804262	6.27988464237981	5.64358299559621	6.36440657299103	6.6420397434905	5.91106600603564	0.408694656118437	0.259878155013504	0.657466424965747
Merged-chr7-80176647-2	chr7	80176147	80177147	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10194.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.29922631679685	3.27872671718291	3.38393270362642	3.58006562555018	3.44410531387178	4.08034322194576	1.4523410657164	0.0199742480861127	0.161251308309815
Merged-chr9-97111195-4	chr9	97110698	97111698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138756)	promoter-TSS (NM_138756)	-157.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	8.50368748173743	8.67273579065695	8.27749251457297	8.11738962146831	8.22175222099736	8.19049828106333	-0.450655955274065	0.0406508954712816	0.251448090274636
Merged-chr15-61988011-6	chr15	61987472	61988472	+	934.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010849, exon 2 of 3)	exon (NM_010849, exon 2 of 3)	2631.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	6.33045825114578	6.71020161866683	6.57607289332349	6.43719519148055	6.64115264950151	6.40168034729031	-0.0705475761841134	0.802469695861389	0.953198534492307
Merged-chr2-90581368-5	chr2	90580921	90581921	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	-774.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.7544836859785	5.25982597648019	5.53208914847929	5.91195636776027	5.38254893049607	5.34960258000415	0.0859747426660153	0.82105123178916	0.957942312428027
Merged-chr11-53563227-3	chr11	53562727	53563727	+	966.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-4142.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	4.71722045512571	4.73970759512963	4.8743819115874	3.86288888596722	3.92275639399768	4.07841725760095	-2.25768277132975	2.33040056555322e-06	0.000114399982453423
Merged-chr1-164066884-4	chr1	164066385	164067385	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 4 of 7)	intron (NM_001164059, intron 4 of 7)	4809.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	4.13758573751032	3.87467127950694	3.83681826367019	4.25149682832504	4.25028486840027	4.34232799177396	0.898092669172028	0.0683112147218932	0.341854945769246
Merged-chr15-30469749-2	chr15	30469249	30470249	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	297156.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	5.42989710421494	5.7549568818667	5.38625339189821	5.81661233603298	6.03981318861209	5.54532173212015	0.52172033948076	0.134920103565345	0.490966149631121
Merged-chr19-5423147-2	chr19	5422647	5423647	+	547.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_015545)	TTS (NR_015545)	1832.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	2.82259384082928	2.54314213057244	2.76362069683815	2.80067767479018	2.93979783320347	3.01622817272318	1.05440417985033	0.158763499434091	0.530580157180119
Merged-chr2-75699000-2	chr2	75698500	75699500	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	5663.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.70426439971787	5.84780820335709	5.61959149371328	5.80864667752218	6.02818515402212	5.89147968237489	0.32882164346563	0.288579818067205	0.686022213065995
Merged-chr2-124609909-2	chr2	124609409	124610409	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172537)	promoter-TSS (NM_172537)	-387.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.26984114206897	8.49602227182	8.31326920964854	8.29753413666966	8.47462032750357	8.00578678092306	-0.117001636537562	0.616334725846487	0.888323384760338
Merged-chr10-111159959-4	chr10	111159468	111160468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-4834.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	6.7438234333467	6.59691596701283	6.55059285287187	6.07294306250124	5.97853319030539	6.05575778836791	-0.99732649773309	0.000265464775838592	0.00631469212921027
Merged-chr7-35057772-2	chr7	35057272	35058272	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1206.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.09644289210986	5.21140138222363	5.5556805195198	4.81035150700351	4.84733329268509	5.51585316205631	-0.423134055552374	0.321491594798642	0.714882390432811
Merged-chr1-74362858-4	chr1	74362400	74363400	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 3 of 10)	exon (NM_001033345, exon 3 of 10)	792.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	5.1076586992972	4.83602050324443	5.04959479801976	4.7973513445034	4.84323422802514	5.26970491514667	-0.0544291679630708	0.892095590354648	0.974942585822634
Merged-chr7-140953912-4	chr7	140953413	140954413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	2048.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	7.50393259480167	7.54316807022594	7.20226999199727	7.56272496368982	7.55342528010153	7.615319783602	0.20731327451544	0.377793748958635	0.76017368179697
Merged-chr13-52646688-3	chr13	52646187	52647187	+	774.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	49805.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.64062307452081	2.76525559578794	3.12115475006144	2.66111432833302	2.52694867695812	2.85934416396423	-0.872666939676929	0.267286499327576	0.664581053738824
Merged-chr4-35099999-4	chr4	35099499	35100499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-52056.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	5.62291868430065	5.44913411329366	5.35325319677398	5.28085204753178	4.93655296271278	5.50418409253443	-0.46961540925473	0.20765297368732	0.598510119317417
Merged-chr4-152477620-4	chr4	152477158	152478158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355173)	promoter-TSS (NM_001355173)	-80.0	NM_001355739	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	6.8212491766172	7.07384613971292	6.87240385872409	7.14948953109783	6.85221474748273	6.98721557785398	0.10526660828273	0.682090683557513	0.914935862547256
Merged-chr4-146484030-2	chr4	146483530	146484530	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17970.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	2.78958680033837	3.09241923109386	3.01241541321048	2.9911265769111	3.17173833824736	3.66277643711779	1.39492912239612	0.0571385404733902	0.308305795714276
Merged-chr10-127569670-4	chr10	127569201	127570201	+	804.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-35142.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.88044030070672	3.85759341776083	3.95029230097623	3.9014343993295	3.89330724116914	4.3654906582709	0.499159885405794	0.339186331571948	0.72908851142957
Merged-chr18-66464529-2	chr18	66464029	66465029	+	786.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021451, exon 3 of 3)	3' UTR (NM_021451, exon 3 of 3)	5925.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	3.24876677483935	3.10001750177887	3.6776785687904	3.45726709042816	3.07317021181051	3.50044427440518	-0.0209788870928729	0.975307511910609	0.994454548709104
Merged-chr5-124552838-4	chr5	124552332	124553332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	-32.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	6.86112677043462	6.91145366729876	6.64042678196482	6.81450847741813	6.89154200405982	6.44203196548727	-0.114439934873761	0.678725756069997	0.913547105216319
Merged-chr16-89848770-4	chr16	89848277	89849277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-30425.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	5.37945361746031	5.26702344341817	5.60218106325528	5.32978563812425	5.38058872156462	5.78627895972613	0.171793040792115	0.631568095934145	0.895219738483912
Merged-chr5-134606541-2	chr5	134606041	134607041	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 5 of 12)	intron (NM_020044, intron 5 of 12)	8484.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	2.5451648237113	2.56245985930273	2.74122069566775	2.45505251618301	2.36834764206822	2.37354377059222	-1.34466400230343	0.101461815346173	1
Merged-chr15-95962626-3	chr15	95962120	95963120	+	905.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 17 of 19)	intron (NM_175344, intron 17 of 19)	116933.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	4.43639220234965	4.47948086955108	4.4845092180062	4.04561975342137	4.18620099136259	4.20212041838528	-0.858401530400845	0.0586688218555555	0.313312067836279
Merged-chr6-125403799-3	chr6	125403356	125404356	+	718.9523929999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23352.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.90122887959662	4.52070785658343	5.0706858229736	4.51970256388895	4.25941013420731	4.60942343024445	-0.91121944318672	0.0434173134223736	0.261825468564202
Merged-chr14-27336627-7	chr14	27336163	27337163	+	915.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	626.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.69968843101914	6.9586049571253	6.70046905089893	7.02192558855232	7.01073678484302	6.83811229711692	0.256779276738198	0.316530965224294	0.710612278530442
Merged-chr8-105605760-3	chr8	105605252	105606252	+	875.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	523.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	6.29712247136984	6.45935332194691	6.30664840410825	6.26582940878564	6.15771961140402	6.2874841964976	-0.209869734590962	0.445457563748821	0.805194667777499
Merged-chr2-157798530-4	chr2	157798028	157799028	+	785.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 4 of 15)	intron (NM_025680, intron 4 of 15)	61127.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	3.16475912188869	3.30241801377812	3.25294661137506	3.10943280337831	3.48497304352518	3.26714628082078	0.25004398768582	0.696384745898257	0.919442007192133
Merged-chr10-78087306-4	chr10	78086779	78087779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17911.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	5.34221805496889	5.31987275126534	5.61060961079323	5.41098266469206	5.34448134853296	5.2325502687222	-0.166731880910236	0.629321213954434	0.894177193823197
Merged-chr9-40271336-2	chr9	40270836	40271836	+	614.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286614, intron 2 of 6)	intron (NM_001286614, intron 2 of 6)	2120.0	NM_001359700	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.20587487799926	2.10174477991842	2.15542171741687	2.48212258907325	2.17138764826129	2.49651519788746	1.61828956027652	0.0746386822881922	1
Merged-chr19-60731087-3	chr19	60730583	60731583	+	882.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24904.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	2.79501076195308	2.81458772151357	3.04332649045204	3.01053296201629	2.64351480006843	2.88078796180022	-0.164693769421431	0.822840562594516	0.958157740034768
Merged-chr7-15945105-2	chr7	15944605	15945605	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133831, intron 2 of 12)	B1_Mus1|SINE|Alu	1003.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	3.63102697116125	3.54244641850152	3.79335226338423	3.7891660487634	3.93057385812558	3.86266625708776	0.700000592745998	0.190077225611437	0.576216758852106
Merged-chr8-14889379-3	chr8	14888877	14889877	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	841.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.92119936068628	9.32382894998014	8.58350446503036	8.99715866205889	9.38089293184314	8.77061790046709	0.12929345103365	0.644927652134881	0.900371814385472
Merged-chr5-114691499-2	chr5	114691001	114692001	+	975.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-566.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	3.07375421779507	3.1839961309324	3.23485424389401	3.15528769964332	2.82165821839251	3.13648659557802	-0.545753497403582	0.423425447889743	0.792033749856087
Merged-chr2-165927542-2	chr2	165927051	165928051	+	694.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-42713.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.46275280026141	6.11646937222191	6.217353023631	5.81695458907017	5.4007761698259	5.22595417478562	-1.34941387322199	0.000104738020316737	0.00294626139097872
Merged-chr15-64163393-3	chr15	64162896	64163896	+	753.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001276461, intron 9 of 28)	L1MB5|LINE|L1	-102948.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.26290881703331	3.41613863182516	3.3255098124438	3.308422719086	3.42100928135227	3.3967310294342	0.154876232494385	0.796152693801994	0.95140420098761
Merged-chr4-9667240-2	chr4	9666740	9667740	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1922.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	2.59750655959098	2.65706303665192	2.60199160521484	2.7935665973281	2.68580900432372	2.86055789324972	0.864167291238285	0.245660618986622	1
Merged-chr9-96705763-4	chr9	96705272	96706272	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13673.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	6.73239617955599	7.00492027620658	6.43164758734392	6.25143558848746	6.40927957157851	5.92584898716996	-0.85210987155649	0.00683458378844365	0.0767983859377203
Merged-chr14-61774380-4	chr14	61773877	61774877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92004.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.8852591901297	5.57958302751614	5.83249985890803	5.60827569591687	5.61691868679174	5.52095795928401	-0.336205273230476	0.296923599978819	0.693511179566253
Merged-chr2-101734803-2	chr2	101734321	101735321	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 6 of 8)	intron (NM_001355625, intron 6 of 8)	56401.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	2.70312897033618	2.97961642232609	2.8927157246403	2.86313958706602	2.62545901081346	3.2975143236984	0.432856198959148	0.579123430836637	0.872437416842052
Merged-chr16-30972555-2	chr16	30972055	30973055	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	108877.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.07671741593291	4.53857430432877	4.82739530250433	5.0421777587238	5.03827252160457	5.35359790988441	0.667088351608825	0.106980382016286	0.436519724816527
Merged-chr17-42885469-1	chr17	42884969	42885969	+	586.0	f1_c57bl6.idr	Intergenic	Intergenic	-9045.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.56752455810372	3.25064334834398	3.28967050848275	3.67301145568887	3.73904296578195	3.75272438078704	1.22125005289512	0.0409096469285165	0.252260997601008
Merged-chr8-13154337-3	chr8	13153835	13154835	+	863.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-4826.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	5.55381469169169	5.69947758519384	6.08619325815253	5.59139313026299	5.68730277195717	5.93500685058041	-0.0876018371005725	0.797597026500158	0.951799370596145
Merged-chr10-111390087-4	chr10	111389591	111390591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83136.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	4.07612898848093	3.85624529179263	3.66678576752499	3.71027415860776	3.7053380814167	3.79227930759653	-0.48624688419266	0.368816679294584	0.753638793969867
Merged-chr9-61960986-4	chr9	61960493	61961493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 7 of 7)	MER5A|DNA|hAT-Charlie	-14194.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	6.61305915275701	6.54971615123356	6.82384242397297	6.72116676774023	6.73652487323639	6.65211525287131	0.0749977909654212	0.772085087049125	0.943680976839558
Merged-chr10-59237886-4	chr10	59237383	59238383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	15961.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.52750042740615	6.42066558735736	6.6670872742111	6.49708650909239	6.7423239839797	6.64576749726181	0.160094371935288	0.549001020663097	0.860131595139289
Merged-chr8-117198309-4	chr8	117197821	117198821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	40186.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	5.79958776070714	5.41088123302466	5.41644499849872	5.3535142696362	5.39401212183381	5.14727365447869	-0.483839949885745	0.175586665342621	0.555563740582127
Merged-chr12-113128900-3	chr12	113128398	113129398	+	706.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 10 of 19)	intron (NM_001346696, intron 10 of 19)	-11338.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	4.44127410613607	4.54806169781497	4.72996724559851	4.72737251411329	4.60361201477844	4.71967632335441	0.266819586119889	0.520642718916625	0.846662720861138
Merged-chr2-127182994-4	chr2	127182492	127183492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25288.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	5.74696749585281	6.02093141124991	5.82218571148283	6.76844471126864	6.99592660016489	6.95535739108749	1.69250531215657	2.36076947285971e-09	2.43715764637358e-07
Merged-chr3-116815568-2	chr3	116815068	116816068	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7402.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	2.52294984585525	2.77599373548866	2.45371366598534	2.71860931608761	2.44873769514755	2.72453719285497	0.214742829412838	0.79244937493404	1
Merged-chr15-41615622-4	chr15	41615132	41616132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	L3|LINE|CR1	166529.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.53532135213358	3.51452653015783	3.38150751983877	3.61973400227199	3.1155856261195	3.3963937760417	-0.336197856015221	0.595303741148604	0.879471010823782
Merged-chr2-77285148-3	chr2	77284632	77285632	+	847.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4540.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.90708847756741	3.89277051559432	3.71784845588589	3.78013050932965	3.7421316391117	3.73490788296721	-0.30747660392966	0.558218288038951	0.864587370607469
Merged-chr5-108001129-4	chr5	108000619	108001619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14042.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.23823366287152	4.35655729222832	4.55442965691913	4.45854686558429	4.28252447533165	4.23517925387138	-0.133132391621157	0.770042220172977	0.943310056383255
Merged-chr2-11427480-2	chr2	11426980	11427980	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	4.26883600994169	4.2607364412526	4.30812850535354	4.57897867134778	3.82960689558534	4.09383162015949	-0.189824006848545	0.71798673854515	0.927249469209724
Merged-chr1-87829831-3	chr1	87829357	87830357	+	791.57782	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	-23430.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	3.55808302469113	3.72569976466384	3.60227607968675	3.42129788609653	3.20344900227736	3.91370841352034	-0.31318666049537	0.622716941080778	0.891249034616027
Merged-chr3-142495304-2	chr3	142494804	142495804	+	784.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1630.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	3.45722425676123	3.46818199767698	3.43791665215469	3.40257930467628	3.34612636493913	3.45377243419569	-0.219088965386053	0.706384920860394	0.922959194348248
Merged-chr18-67611498-1	chr18	67610998	67611998	+	593.0	f1_balb.idr	Intergenic	Intergenic	29857.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	3.88432700637544	3.78814437148796	3.8939699049141	3.69043171807197	3.80169777231054	3.91416668599067	-0.168046931320233	0.746442109043416	0.936300236930265
Merged-chr14-22913102-4	chr14	22912593	22913593	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	181478.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	3.69867494689986	3.77588280514696	3.94926528449872	3.83623373758856	3.62445488239799	3.77387293504303	-0.203398565108551	0.70388354335698	0.922281360858231
Merged-chr5-140609759-4	chr5	140609274	140610274	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	2433.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.8601062644322	5.96319963541207	6.31429713641449	6.32351762232662	5.87400594080063	6.00434741308412	0.0513630990838714	0.874513254177845	0.970754540400126
Merged-chr4-129188183-2	chr4	129187683	129188683	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361317, intron 1 of 8)	intron (NM_001361317, intron 1 of 8)	1359.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	2.99152485766684	2.75737498061622	3.13596625868665	2.73437226029966	2.87447142260205	2.98243529120895	-0.483347468520906	0.504380315848617	0.837664432515541
Merged-chr1-39577497-4	chr1	39576996	39577996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-149.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	8.12244345444716	8.05740556836808	7.95232657765954	8.18261290803024	8.09469217556832	7.99299069155533	0.0647180338050979	0.760569881255653	0.940894406558338
Merged-chr16-58512523-6	chr16	58512216	58513216	+	978.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	10710.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.03917563487824	7.06134966973063	6.67579637521835	6.28740912233193	6.69502155108337	6.84311196842318	-0.495639902222188	0.0904287789331835	0.399959990041833
Merged-chr5-114699170-4	chr5	114698656	114699656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-8221.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	8.0157381628058	7.25936773699767	7.63874529279235	8.02004405057994	7.91398286533769	7.76745408865489	0.32597102675489	0.241375420097878	0.638385260200477
Merged-chr14-50841716-1	chr14	50841216	50842216	+	762.0	f1_c57bl6.idr	intron (NM_009351, intron 29 of 54)	intron (NM_009351, intron 29 of 54)	28838.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	4.59817765970972	4.44259613584498	4.6886711153405	4.82415777204714	5.34370029669456	5.43910804367317	1.44212308252298	0.00059735664835153	0.0121083683303372
Merged-chr5-147554514-2	chr5	147554014	147555014	+	740.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124358.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	2.55832284322448	2.80525072821736	2.7730718751893	2.43474312162044	2.41526525734462	2.66471472582214	-1.24741502748291	0.123289345687193	1
Merged-chr1-120517755-4	chr1	120517260	120518260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12736.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.55708707351562	4.32869208662441	4.43155560193718	4.96442297426038	4.35431348721061	4.62717943893895	0.553957630403468	0.229255999537013	0.624749364077556
Merged-chr11-50290326-2	chr11	50289826	50290826	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	2010.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	5.88680717550628	5.98755220165893	5.75709538874655	6.08673300833273	6.20833020333296	5.99595955066706	0.378968262489468	0.202656426854916	0.59252027125208
Merged-chr7-43614440-4	chr7	43613906	43614906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355131, intron 3 of 3)	intron (NM_001355131, intron 3 of 3)	7237.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	4.85505048407178	4.77292542088189	4.62514150346901	5.2701560553095	4.94031540066852	5.07858794276127	0.739683591124021	0.0601521386709921	0.317565914944096
Merged-chr9-89259122-4	chr9	89258619	89259619	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	47735.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.71500744234972	5.71415948139501	5.88037670951182	5.47568487230516	5.54497728199309	5.46859152770622	-0.493489322332982	0.120556378403666	0.464366962976218
Merged-chr7-99956351-1	chr7	99955851	99956851	+	618.0	f0_balb.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	24107.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.79301158872688	3.94351534717468	4.08328647916565	3.77318332454429	3.57125229059961	3.87250095825143	-0.653708114567517	0.223029555795463	0.617873923044078
Merged-chr7-121080197-3	chr7	121079719	121080719	+	732.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3219.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	5.11783085146536	4.87165235958376	5.22395105043172	5.30122947052242	4.92364908366916	5.28720443070965	0.211596738083839	0.583811059003491	0.874225271981634
Merged-chr3-82800636-4	chr3	82800126	82801126	+	906.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75857.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	3.53690760791107	3.48323937455371	3.28420871325636	3.21406999577495	2.81855654192203	3.05104122265728	-1.79499848338018	0.0111545416880114	0.108631449529032
Merged-chr11-75254702-4	chr11	75254201	75255201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	60708.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	6.52161574942994	6.86597645981037	6.62855573216377	6.74947628418591	7.16833896331675	6.9458899838226	0.450668303954676	0.104590433575939	0.431620334126207
Merged-chr13-63877298-4	chr13	63876792	63877792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013608, intron 16 of 18)	intron (NM_001013608, intron 16 of 18)	62052.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	3.51357556138271	3.69452659083435	3.42170075293345	3.72931388589395	3.75217583120747	4.2279284241204	1.18525695393259	0.0445319331517353	0.265983281436335
Merged-chr1-85278419-1	chr1	85277919	85278919	+	992.3333130000001	f1_balb.idr	Intergenic	L1_Mus3|LINE|L1	-7853.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.68280932974419	3.78181085224832	3.66996949695852	3.00307620629407	2.85333084800326	4.09896169915463	-0.572982298269278	0.807624849757418	0.954557080558103
Merged-chr2-119662897-4	chr2	119662411	119663411	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356467)	promoter-TSS (NM_001356467)	-77.0	NM_027175	69702.0	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	5.81920699929027	5.96384870697274	5.95887370888581	5.64321333466059	5.52731889037482	5.58999668969561	-0.597933641925754	0.0527020750179811	0.293760112235557
Merged-chr2-84632641-2	chr2	84632141	84633141	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	B1F|SINE|Alu	16839.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.40255598213167	5.43089500782157	5.91437633397902	5.46519029700989	5.56309718777752	5.64169049771466	-0.0631908156345772	0.85690660126178	0.966629400618063
Merged-chr8-54530086-4	chr8	54529591	54530591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029701)	promoter-TSS (NM_029701)	-93.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	7.15231486040568	7.30236016596741	7.29118037969534	7.1262631004486	7.24615836286545	6.80115104628332	-0.24912795019301	0.330808624151093	0.722226411767471
Merged-chr13-36150496-2	chr13	36149996	36150996	+	629.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	32853.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	2.9359295504935	2.93947016875331	2.75557746534077	2.98115947889089	2.72061294233682	2.95504516090138	0.0158235463183916	0.98248522069751	0.996025201140234
Merged-chr11-75678646-2	chr11	75678146	75679146	+	933.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-613.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	4.56515783908837	4.31515616293511	4.86152444334994	4.66192244986055	4.30854948452485	4.6364008046155	-0.123670323819959	0.788432380195681	0.948954880993192
Merged-chr19-32710609-2	chr19	32710108	32711108	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026487, intron 1 of 9)	B1_Mus2|SINE|Alu	1690.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	3.04698796032675	2.84720156735999	2.87528851334077	3.01275997493416	3.23778101808755	3.1319695133757	0.936183308803226	0.173120730155028	0.551857854984095
Merged-chr6-97204897-2	chr6	97204397	97205397	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111106, intron 1 of 16)	intron (NM_001111106, intron 1 of 16)	750.0	NM_001301857	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	3.78144209619065	3.7778547367001	3.78462010025741	3.67257244537483	3.76684665854421	3.69834571824055	-0.215170347393748	0.683598698429305	0.915479407206029
Merged-chr18-70437655-4	chr18	70437167	70438167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34787.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.56910380635674	4.77156445257224	4.7729886609579	5.50307851696981	5.20450552901341	4.9200684536109	1.14942456491719	0.00439519321363267	0.0558855802139284
Merged-chr5-99232260-2	chr5	99231760	99232760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 7 of 13)	intron (NM_181318, intron 7 of 13)	20667.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.29660947505193	4.00466367253865	4.62339096772936	4.30559967111907	4.16771941594882	4.65187157671583	0.153446897465312	0.7612893303012	0.941210700955429
Merged-chr9-50866025-3	chr9	50865531	50866531	+	876.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286553, intron 5 of 16)	MTC|LTR|ERVL-MaLR	9107.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	2.79689516460493	2.55853979774305	2.73172260785298	2.7088039228124	2.48489846792139	2.92363142625081	0.0746750649197848	0.924168044766479	0.982917919313605
Merged-chr8-70477042-4	chr8	70476578	70477578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-135.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	5.18245896406344	4.80975775520751	5.21281378652652	4.71795812857771	4.52812259049701	4.59734069719604	-1.04146429674971	0.0113600088512622	0.110040001920352
Merged-chr17-74431711-4	chr17	74431191	74432191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MTE2b|LTR|ERVL-MaLR	27417.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	7.76695733714414	7.86122361114206	7.64472492372763	7.618730627561	7.89355182246185	7.59643716366802	-0.0683283280694945	0.768940052103077	0.942983923980385
Merged-chr8-11758875-2	chr8	11758375	11759375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017402, intron 1 of 19)	intron (NM_017402, intron 1 of 19)	545.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	5.49068779875266	5.5662745654841	5.72119493569739	5.80804987195105	5.49197187798101	5.78271380626989	0.193556813611932	0.556313730154905	0.86357390983939
Merged-chr19-18643476-2	chr19	18642965	18643965	+	717.0	f0_balb.idr|f1_balb.idr	intron (NM_145497, intron 7 of 8)	intron (NM_145497, intron 7 of 8)	11449.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	4.17922488841155	3.81135245392851	3.63672020976404	3.10297317806591	3.18084091890418	3.36172568501003	-2.70679811947316	5.7455683058313e-05	0.00177000091666646
Merged-chr6-127472254-4	chr6	127471747	127472747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181402, intron 4 of 8)	intron (NM_181402, intron 4 of 8)	18620.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	4.82246612294833	4.9224929311759	4.79712184829736	5.14193295633889	4.96612753979696	4.51686161012052	0.134182367060123	0.749388760710402	0.937311153542289
Merged-chr7-58398363-3	chr7	58397878	58398878	+	689.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-259824.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.85325374147589	4.01887968714705	3.62385200691834	3.8305617079471	3.67580654937294	3.90561373540697	-0.159040133304739	0.770412102539709	0.943392092118189
Merged-chr10-68473546-2	chr10	68473046	68474046	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	(CA)n|Simple_repeat|Simple_repeat	68329.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	3.05385244192037	3.25493079002298	2.9798753931449	2.96242515667292	3.02111597065079	3.17147087955901	-0.247788253611998	0.712924296534718	0.92531822516521
Merged-chr2-142901565-4	chr2	142901073	142902073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081133)	promoter-TSS (NM_001081133)	-109.0	NM_001355123	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	6.86310384320336	6.73801470647439	6.53510510339197	6.81691240204034	6.63190867492469	6.42456975902407	-0.135130297024418	0.624106760320015	0.891819943546416
Merged-chr2-132847213-2	chr2	132846713	132847713	+	849.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025646)	promoter-TSS (NM_025646)	-521.0	NM_025646	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	5.6264262621576	5.44068573736183	5.51043901149889	5.56635046256379	5.04331835335679	5.42778328865663	-0.334095290974944	0.355594546783455	0.742472851181279
Merged-chr5-137338417-4	chr5	137337914	137338914	+	802.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	3.75300094636681	3.93765051502397	3.87878033451264	3.62662508996433	3.34784390955715	3.89985340951265	-0.749234207561869	0.197396579235983	0.585372770414756
Merged-chr9-123815648-4	chr9	123815143	123816143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	9166.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	5.81847555783249	5.61616921404064	5.94539404580869	6.01397970906685	6.26465063403056	6.40624980171197	0.766752962018312	0.0133351370825604	0.122769427568675
Merged-chr2-32537768-4	chr2	32537260	32538260	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	MIRb|SINE|MIR	2401.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	5.495944202368	5.4688270927318	5.75179978522579	5.63512458170989	5.86812954356068	5.71149799002617	0.332613845872949	0.30524847486846	0.701486464326093
Merged-chr17-26252957-4	chr17	26252443	26253443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	33.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	7.44718645973931	7.79272109195201	7.56730466914858	7.45919172750314	7.49634615248907	7.54668139178373	-0.165551943008893	0.480093387077784	0.824485257133086
Merged-chr9-14833949-2	chr9	14833449	14834449	+	755.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-26261.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	3.1678927849602	3.51539465862449	3.44296816200437	3.31348319330157	3.1767930570031	3.56502180015665	-0.113275486530564	0.858613654624447	0.966942654548777
Merged-chr5-134099692-4	chr5	134099206	134100206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-42.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	5.95028007313485	5.74596404038048	5.9717739252935	5.93033674168131	6.04478692716536	5.86573256208035	0.118606981603249	0.694242030350988	0.919210273513843
Merged-chr10-44533503-3	chr10	44533013	44534013	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74765.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.76983100008087	3.69887764606129	3.58732091289969	3.59685758409765	3.75033103260918	3.7644434231302	0.0468680354105556	0.931326432496927	0.984861279725543
Merged-chr8-122923085-4	chr8	122922562	122923562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	74688.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.86056976124603	5.70611627853882	5.55626272468611	5.89561558686439	6.25257037901195	5.96590363515032	0.59007371210003	0.064528145479561	0.331067821498539
Merged-chr4-132011660-4	chr4	132011138	132012138	+	886.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	37440.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	5.19598592768285	5.12494472597604	4.83032835488893	5.20469744843088	4.92921801171726	5.01228419659829	-0.039563106227014	0.91796142004587	0.981747877135909
Merged-chr8-79945874-2	chr8	79945374	79946374	+	696.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112134.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	2.94783873227117	3.26640425281827	3.019963089592	2.83765411362702	2.87276450424882	2.90973797439695	-1.02906243078241	0.143319746348708	0.505355524537813
Merged-chr7-28402394-2	chr7	28401894	28402894	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 11 of 12)	intron (NM_175021, intron 11 of 12)	9398.0	NM_019458	54624.0	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	2.66180982892087	2.81608677007749	3.06279295957565	2.76584657149417	2.81027074431263	2.84980753822278	-0.217007759570783	0.767369966230167	0.942617496111852
Merged-chr4-53126418-2	chr4	53125918	53126918	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	33477.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.24060787250725	7.25263223661134	7.19188447006811	7.4503072402909	7.30931671838751	7.30820632585551	0.189595873308002	0.408017319283616	0.781926100186554
Merged-chr7-80781216-1	chr7	80780716	80781716	+	848.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	B2_Mm2|SINE|B2	22115.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.44905997344912	6.48075339534688	6.51457531547572	6.69686016145623	6.8212123799074	6.73880477614092	0.440464007235382	0.0836342011295137	0.382722925576571
Merged-chr7-81860261-4	chr7	81859747	81860747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1246.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.48725864430431	7.75095789740811	7.38673058417337	7.12322644317063	7.40845460576793	7.42250624142994	-0.340453630613806	0.173262899790224	0.551957215225209
Merged-chr7-141436717-3	chr7	141436208	141437208	+	907.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360724, intron 1 of 9)	intron (NM_001360724, intron 1 of 9)	1166.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	5.20985589365677	5.04268857933172	5.44387969356653	5.46970277766979	5.42845102311144	5.26393909679293	0.328570460790649	0.356706027331308	0.743448231367782
Merged-chr13-102665365-4	chr13	102664862	102665862	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-28185.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.73056397573534	3.60811807629932	3.63368796217142	4.37746613070629	4.44600661994275	4.27580853370428	2.1753186703982	2.8216110287751e-05	0.000977845108214571
Merged-chr2-119897528-3	chr2	119897026	119898026	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013720, intron 1 of 23)	CpG	298.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	8.2328954410686	8.39289915600681	7.69179346819135	8.02462078148379	8.4433075265526	8.02149080020001	0.0515736046344487	0.85299629018441	0.965595746053526
Merged-chr1-151625457-4	chr1	151624959	151625959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54086.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.19189236180576	6.1342377145805	6.1759196436583	6.07915832749116	6.27062657859713	5.94059440974283	-0.0856491347751763	0.768462027899469	0.942871018290895
Merged-chr3-104866012-2	chr3	104865512	104866512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045578, intron 1 of 13)	intron (NR_045578, intron 1 of 13)	1506.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	3.86781843583867	3.82065365628994	3.90694472411545	3.99629248457552	3.77747799502577	4.11462861614682	0.302727849765332	0.556443938308521	0.863603167403937
Merged-chr4-19872150-4	chr4	19871600	19872600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50466.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	6.28901922963515	6.70112354816043	6.55756491536551	6.25424692133757	6.45447529767446	6.32472434796639	-0.286271051329208	0.317488577680036	0.711322568148047
Merged-chr10-80432975-2	chr10	80432475	80433475	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 1 of 18)	intron (NM_001164153, intron 1 of 18)	678.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	4.35580894645849	4.04210790899375	4.43766993025499	4.29901926625657	4.07104193758327	4.2021546800312	-0.252015433016068	0.600296519659882	0.881562830647152
Merged-chr6-71931857-1	chr6	71931357	71932357	+	589.0	f0_balb.idr	intron (NM_009088, intron 12 of 33)	intron (NM_009088, intron 12 of 33)	22804.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	5.22047215534973	5.14115645909256	5.61299819039921	5.3700221054315	5.2180687962424	5.43305208566522	0.0188943743327611	0.958670054303275	0.99015359851262
Merged-chr11-107452295-2	chr11	107451795	107452795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	Lx7|LINE|L1	18425.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	5.72410770524255	5.76759354980385	5.61076591374457	6.33395139884191	6.31631547967444	5.78884842474169	0.827986521215057	0.0105951367464748	0.104665812465947
Merged-chr13-59867399-4	chr13	59866877	59867877	+	954.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44230.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.61272105761619	4.50215235336922	4.54010162607641	4.7909984822979	4.63008824568782	4.38383854162834	0.161838921398618	0.705776027206524	0.922834459892351
Merged-chr3-21995670-3	chr3	21995127	21996127	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81025.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.44606195370179	3.28218387958545	3.42315481408792	3.2555434079231	3.30656124882585	3.32818005822057	-0.347084092626668	0.565028909162082	0.866552670637515
Merged-chr7-119878702-2	chr7	119878203	119879203	+	887.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	(A)n|Simple_repeat|Simple_repeat	16755.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	2.38429886564839	2.42682077452332	2.52744088901036	2.62024706411258	2.41609072635856	2.84292934555139	1.09707983199116	0.178194613057407	1
Merged-chr19-29485475-4	chr19	29484989	29485989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36498.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	8.06616319147315	8.14811347766045	7.78304816964581	8.08977935961216	8.27851522800915	7.75852858447481	0.0767929969445882	0.759665870362924	0.940561686474309
Merged-chr17-87973843-2	chr17	87973343	87974343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1207.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	2.5585191977315	2.29994943325194	2.61773510284165	2.55081357736636	2.49787696883508	2.86861137211456	0.843187598886689	0.309492285993623	1
Merged-chr2-150820311-2	chr2	150819811	150820811	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 13 of 19)	intron (NM_153781, intron 13 of 19)	22259.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	2.36964622004996	2.26457218500953	2.53854211202561	2.08928284424797	2.31339930076245	2.42792898470622	-0.718226121162432	0.426335136964065	1
Merged-chr12-35117717-4	chr12	35117207	35118207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 17 of 25)	intron (NM_001014973, intron 17 of 25)	70518.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.28035707691368	4.17491997436927	4.0772326040818	3.82592826222632	4.15399494069573	3.99836391498301	-0.508213125929517	0.308912599742453	0.70476767553933
Merged-chr4-150281538-4	chr4	150281025	150282025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085492)	promoter-TSS (NM_001085492)	-391.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	6.24596363699423	6.57855940566448	6.63576978700161	6.5545900572264	6.59927043563548	6.41641280012282	0.0616760155611882	0.825665466197264	0.958871344165038
Merged-chr16-33829565-4	chr16	33829030	33830030	+	938.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010580)	promoter-TSS (NM_010580)	-135.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.72007359333533	5.65275189374338	5.75911632232516	5.88709063230806	5.53472727717074	5.7700556614304	0.0431514815492311	0.892870234830005	0.975146620821922
Merged-chr15-78450303-4	chr15	78449793	78450793	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18341.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	4.48105182675185	4.09593861165095	4.14184414815297	4.31957882980938	4.01939902080532	4.01076478683409	-0.360554220707829	0.469981012048982	0.81925210647697
Merged-chr4-155832109-2	chr4	155831587	155832587	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025338, intron 2 of 3)	CpG-10779	818.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	6.86182651557541	7.14708907576254	7.20088395405324	7.05918149070156	7.13501557926032	7.30338851905308	0.138008504979807	0.585238458945503	0.874924030542553
Merged-chr13-59669025-4	chr13	59668525	59669525	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	6759.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	5.78734663842572	6.10884382078645	6.14445949436997	6.02547783040267	6.11286471367407	6.46452741641738	0.318643487385932	0.311231524414168	0.706465219571547
Merged-chr18-11674545-2	chr18	11674045	11675045	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045527, intron 3 of 17)	B3|SINE|B2	17196.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	2.97053434066478	3.44072050233419	3.64236205140091	3.31130582283712	3.44911517139917	3.71119450901425	0.434741137839211	0.529921453017901	0.851070276054813
Merged-chr11-115066019-2	chr11	115065519	115066519	+	986.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3980.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	6.28512699407705	5.87985479813424	6.4369820564472	7.52316071013958	7.1847818596736	7.24513901333758	1.74402139880693	1.83848887364647e-09	1.92666224431203e-07
Merged-chr1-131963834-4	chr1	131963335	131964335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	920.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	7.78650863641085	8.21463964330767	7.81823489711033	7.48007883060597	7.7253186545989	7.4160679641592	-0.58334716548543	0.0210181029208232	0.166781833667352
Merged-chr6-114877032-2	chr6	114876532	114877532	+	672.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	44789.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.22472604776326	4.18798726214861	4.57665078518951	4.26880872085617	4.16599286880794	4.56674182426527	0.00884765639111415	0.985254660761472	0.996873682039026
Merged-chr15-27679858-1	chr15	27679358	27680358	+	545.0	f1_balb.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	1684.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.59353196806229	5.84655972654198	5.51603539621482	5.90529111514422	5.84934754696222	5.66690931774556	0.267299414309293	0.407999029592995	0.781926100186554
Merged-chr5-110448594-4	chr5	110448088	110449088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-85.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	6.88676120997227	6.34205532635906	6.63842359851	6.9435905700629	6.49009783859383	6.72952158367874	0.139660022640146	0.643482946915009	0.899820668306401
Merged-chr16-31070123-2	chr16	31069643	31070643	+	851.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	11289.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	2.5925374518056	2.6523103195344	2.66218602694388	2.70255167956348	2.75369874879004	2.79719783939133	0.629661125099175	0.392041363951748	1
Merged-chr8-115420308-4	chr8	115419808	115420808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	286586.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.23459350147226	4.75571735721645	4.6690331926008	4.8434218090827	4.95124422991769	5.07723405246565	0.0769451123717975	0.854150226360798	0.965955829063828
Merged-chr8-88653519-3	chr8	88653024	88654024	+	655.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	6177.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	3.42936055942766	3.39887147372064	3.65418246237866	3.41990410644264	3.567256233502	3.57003428469761	0.108251364103264	0.851698853083561	0.96531854415899
Merged-chr9-20975837-4	chr9	20975327	20976327	+	829.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	966.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	5.3600174861915	5.58090081884603	5.59621050935998	5.83404259226035	5.96561261363008	5.28269827997191	0.420981396167352	0.245584212481159	0.642645689440908
Merged-chr13-78163578-2	chr13	78163078	78164078	+	947.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163419, exon 10 of 10)	exon (NM_001163419, exon 10 of 10)	32871.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	3.00204207886434	2.95459798378692	3.01914603715048	3.02968205352727	3.07065733237183	3.20595675812158	0.498542280747085	0.448884503474577	0.807454029128485
Merged-chr18-38335353-2	chr18	38334853	38335853	+	630.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011937, intron 2 of 6)	intron (NM_011937, intron 2 of 6)	3640.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	2.33399257600507	2.33381034855078	2.51396095534958	2.4837102186425	2.26247379473636	2.33027864297861	-0.203715826757318	0.807023894865314	1
Merged-chr1-131393876-3	chr1	131393379	131394379	+	829.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-114316.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.19097613826129	5.22189918036354	5.12565975735881	5.27407792646531	5.46906040050696	5.52882088516358	0.483051889667772	0.16270329485312	0.536188662408322
Merged-chr6-120090663-4	chr6	120090162	120091162	+	847.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2718.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.01699879441166	5.33901474027792	4.51949575020214	5.14909184301404	5.09372167415718	4.774253626341	0.0142640348611223	0.974733311779315	0.994343415922287
Merged-chr13-19833211-1	chr13	19832711	19833711	+	551.0	f0_balb.idr	Intergenic	Intergenic	-8954.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.27678206390199	3.57852360280032	3.53418625489811	3.43898138556812	3.07049921888924	3.97991163148581	0.289139950981245	0.676807289874269	0.912558027220932
Merged-chr1-40088548-2	chr1	40088048	40089048	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360800, intron 1 of 8)	intron (NM_001360800, intron 1 of 8)	2455.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	3.19029111984717	2.72178466352074	3.00522678410968	3.00163659439316	2.7423239391083	3.07805344214387	-0.197328203162295	0.790527762485032	0.949510125158813
Merged-chr6-122946120-2	chr6	122945620	122946620	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-6395.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	6.07843512464785	6.22025115973272	6.24187438240748	6.17694108683307	6.39866821001573	6.30181072739052	0.201445716542662	0.473412895363846	0.82090428702971
Merged-chr11-59569295-2	chr11	59568795	59569795	+	757.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2443.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	2.87858065829774	2.64805403153869	2.72566919216291	2.80839777746727	2.63191896183849	2.92092149211942	0.164021175777608	0.825548073439164	0.958831094806068
Merged-chr3-95660386-2	chr3	95659886	95660886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008562, intron 2 of 2)	intron (NM_008562, intron 2 of 2)	1665.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.89950350787996	7.97822644974411	7.50495107313483	8.07555740439144	8.44921050674256	7.92381414606076	0.507780920060015	0.0547263088246585	0.300453068400777
Merged-chr10-28975441-2	chr10	28974941	28975941	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026336, intron 4 of 5)	intron (NM_026336, intron 4 of 5)	10865.0	NM_026336	67719.0	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	3.53438931025452	3.70288509763522	3.69935081084961	3.74851454067394	3.69836953478369	3.8195243664369	0.358969183122664	0.505794613458387	0.838177729332582
Merged-chr18-13787108-4	chr18	13786518	13787518	+	799.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185715.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	4.21951622607325	4.02505943165635	3.54788105829984	3.87327196359669	3.87197223595377	3.74146215018178	-0.417052863422481	0.468966919195017	0.818823795567869
Merged-chr11-109420225-4	chr11	109419720	109420720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5726.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	6.67341175506523	6.47442382432961	6.1303880023835	6.36414448493912	5.97146853581944	6.0025334379811	-0.544845998997211	0.0843313123717307	0.384305813014238
Merged-chr9-21149957-4	chr9	21149452	21150452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016742)	promoter-TSS (NM_016742)	-46.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	5.21948746666738	5.67873317032616	5.58678625894066	5.55943102570954	5.69628596563186	5.44718004150554	0.132393809572429	0.705167781258341	0.92270290989203
Merged-chr5-64835460-4	chr5	64834972	64835972	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31949.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.64717640700974	5.62044283622372	5.53158805362651	5.46653711651664	5.74896185206192	5.16997130031881	-0.189995801615165	0.593257290651932	0.878436995890793
Merged-chr8-70832534-2	chr8	70832045	70833045	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7175.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	6.02291859363865	5.52097517582014	5.56695297158704	5.5228046163409	5.17090050645485	5.14631998169716	-0.829941065960464	0.0253263390068434	0.188510064950481
Merged-chr7-110270534-2	chr7	110270034	110271034	+	611.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 7 of 11)	intron (NM_009302, intron 7 of 11)	48831.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	2.7836143652796	2.80686194355963	3.0623265479449	2.86290538549372	2.93066230493211	2.90303359702723	0.0808983003621683	0.908470158179695	0.979259582109985
Merged-chr14-15064324-4	chr14	15063818	15064818	+	887.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243503.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.66422547066546	4.85816454910294	5.17866119310128	5.28867554855698	5.47293319992112	5.11003168015097	0.844413556529613	0.0314496806586633	0.214849345504602
Merged-chr13-46724581-2	chr13	46724081	46725081	+	953.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175749, intron 1 of 21)	intron (NM_175749, intron 1 of 21)	3268.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	4.43997004765964	4.43486166873667	4.18694327564821	4.28858193390591	4.22587257611259	4.302938909811	-0.258966820720507	0.568226000437031	0.868531823304055
Merged-chr10-67004937-4	chr10	67004439	67005439	+	836.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-136.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	7.48663611485054	7.69510171519589	6.87395806185676	7.32220728990725	7.5042699318376	6.85180424814864	-0.21118981580012	0.511962008091159	0.841619835183182
Merged-chr1-180957814-2	chr1	180957314	180958314	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 8 of 22)	intron (NM_144794, intron 8 of 22)	15296.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	6.04395103435806	5.61339488457152	5.83739003078134	5.64344624651736	5.97634731914102	5.87439583902318	-0.00278574455847935	0.993245843770898	0.998651348330892
Merged-chr17-12170438-3	chr17	12169942	12170942	+	973.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51158.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	3.9196065239793	3.72504892536281	4.05204324271753	3.89927573531383	3.83910640885654	4.07435210300613	0.111132050429138	0.830156309745882	0.960219727001139
Merged-chr14-55579645-2	chr14	55579145	55580145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011189, intron 2 of 10)	intron (NM_011189, intron 2 of 10)	1151.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	3.47915273196849	3.33721369768476	3.59687187352658	3.5669015037132	3.43726033257729	3.56241449912874	0.18709989622203	0.746589792225804	0.936300236930265
Merged-chr7-92561334-8	chr7	92560838	92561838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162918, exon 1 of 8)	5' UTR (NM_001162918, exon 1 of 8)	189.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	7.45779258450203	7.7350640902044	7.28065054364769	7.44208216367035	7.67497347683504	7.278080025623	-0.0421889062512537	0.87130446102081	0.970222087171093
Merged-chr15-9131722-4	chr15	9131236	9132236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	8718.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	8.48471385145817	8.49560361497283	8.05405724268371	8.11837128101827	8.56465414315261	7.93742984101482	-0.170694846302512	0.526976532786541	0.849710825989052
Merged-chr13-37217414-2	chr13	37216924	37217924	+	889.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127921.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.8016644321216	3.62214402531581	3.46114139565599	3.34202765437917	3.21944036923863	3.2985488266931	-1.36979786310746	0.0245399206329538	0.184742169917119
Merged-chr11-114896722-3	chr11	114896233	114897233	+	783.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	6692.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.06933993284241	6.27590728224409	6.61715320161944	6.25970632328979	6.31540043761427	6.53159099101913	0.0641722523162295	0.83231459850242	0.960616839788396
Merged-chr11-53770388-4	chr11	53769876	53770876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-97.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	7.92296194118017	7.66481516834695	7.77796144685902	7.73199419859908	7.7726422713669	7.88305497963437	0.00209321636144484	0.992504754072965	0.998523796268552
Merged-chr10-118866051-4	chr10	118865538	118866538	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2865.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	7.03091404008694	6.84712356886822	6.52849954272337	6.92808063372797	6.93667108413366	6.45292569812143	-0.039756107625796	0.8931116213266	0.975200520944414
Merged-chr4-43524353-4	chr4	43523860	43524860	+	852.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-806.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	3.05550662747849	2.94673210049508	3.0646233070628	2.82574226790192	2.91191852340675	2.96057734128311	-0.583252057343949	0.393404140404242	0.771547729581095
Merged-chr6-99665624-4	chr6	99665161	99666161	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	1110.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	6.10857800582487	5.97120750614563	5.76825432135445	6.10972489114846	6.12021522447744	5.9830229214727	0.19007041822281	0.525609175333435	0.849071708183764
Merged-chr13-23728206-3	chr13	23727656	23728656	+	891.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-10651.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	5.72179391917627	5.63589400961137	5.98921787134374	5.69224299235108	5.9677396635856	6.15348641760195	0.294299277361894	0.367392847193036	0.752316901627062
Merged-chr2-12024094-3	chr2	12023592	12024592	+	700.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	246339.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	3.16503890021417	3.07979653769091	2.97837827773241	2.90145766746186	2.80739730352992	3.05118520951557	-0.769522692347449	0.264663326594093	0.662615540597738
Merged-chr9-114621214-1	chr9	114620714	114621714	+	551.0	f1_c57bl6.idr	intron (NM_153585, intron 8 of 19)	intron (NM_153585, intron 8 of 19)	18986.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	2.70815729504349	2.67808263771492	2.78236702590917	3.43692160247282	3.35964946629611	3.05840887441467	3.05073331866125	0.00012469006726399	0.00342077517866867
Merged-chr11-114928657-2	chr11	114928157	114929157	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	5729.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.87713305656428	6.51012088166644	7.18001968192733	6.53431543550629	6.85177225383215	7.08675851442958	-0.0575214247577143	0.853164132703585	0.96560183291394
Merged-chr4-62521034-2	chr4	62520534	62521534	+	795.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-971.0	NM_008525	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	3.17669347393848	3.09089651550552	3.42058539694539	2.9634675369838	2.83271998498102	2.99362561869447	-1.40428467661213	0.0423743890383872	0.257966649334659
Merged-chr16-23981482-2	chr16	23980982	23981982	+	661.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348026)	promoter-TSS (NM_001348026)	-199.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	2.88771302143893	2.68977961436347	2.67027582709868	2.72799941449184	2.72335176251488	2.98702807359826	0.294875143683768	0.691385926950477	0.918275389711443
Merged-chr3-27229119-2	chr3	27228619	27229619	+	818.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	46115.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.10548736649964	4.50571992369126	4.22988812424941	4.47284712681719	4.70054291919568	4.25116173041764	0.514832044881911	0.283299619079916	0.681215891353649
Merged-chr5-100587818-4	chr5	100587306	100588306	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15601.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	6.31324633756094	6.19893283385964	6.33256136218696	6.68078310117396	6.77614126225156	6.67546856739742	0.702123317595278	0.00728109994220435	0.0804362405723499
Merged-chr8-106004882-3	chr8	106004375	106005375	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-6603.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	4.50067518833838	4.62284249653634	4.49381362713431	3.80952059233731	3.98906481168184	3.78701506177849	-1.89057202798502	0.000191569715600085	0.00483327255780834
Merged-chr3-126696767-4	chr3	126696293	126697293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	99842.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.06686506519557	5.21179824186705	4.90325846524608	5.28990078320913	5.35529657938414	5.22212934366945	0.444365650582498	0.219769677025923	0.614138745498825
Merged-chr2-167004642-2	chr2	167004141	167005141	+	680.666626	f0_balb.idr|f0_c57.idr	Intergenic	B3|SINE|B2	-8342.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	4.40771016720097	3.70850346520292	4.43084570531244	4.28415078948245	4.10140560763102	4.05225676682103	-0.197043688436475	0.720266739614015	0.928112783315312
Merged-chr17-25873564-2	chr17	25873064	25874064	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1936.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	4.04244801965922	4.02224626130308	4.10550613820065	3.87267393222099	3.60586819321307	3.9391419177091	-0.78237363208582	0.132164628070641	0.486197270886281
Merged-chr18-75473425-4	chr18	75472937	75473937	+	878.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	L1MB2|LINE|L1	-41208.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	4.52683751209344	4.95723415583129	4.77358446330821	4.41745664278939	4.17513013995151	4.29714882405829	-1.17239793487455	0.00914902130129856	0.094650225592248
Merged-chr2-164793075-2	chr2	164792575	164793575	+	778.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133924)	TTS (NM_133924)	7054.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	4.1453673092208	3.97848538989317	4.24221006723097	4.34172082948595	4.25725637736172	3.80392847496762	0.116824247065955	0.82119902203653	0.957942312428027
Merged-chr1-171561937-3	chr1	171561423	171562423	+	758.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2730.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	5.86279619556809	5.76962301924951	5.3622295187193	5.43860339966166	4.9389813033092	5.22651310814228	-0.927070575391718	0.0136232141767746	0.124498671633285
Merged-chr7-25627289-6	chr7	25626679	25627679	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146184)	promoter-TSS (NM_146184)	-445.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	3.56438071294453	3.64643559220248	3.98697990053912	3.51124519466205	3.0384347974537	3.73457881646058	-0.991376068769115	0.143487321274098	0.505666554935205
Merged-chr11-103359859-4	chr11	103359359	103360359	+	909.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183288, exon 3 of 3)	3' UTR (NM_183288, exon 3 of 3)	3833.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.40723071529191	7.34785108054223	7.32713980324135	7.31163999086002	7.68003756834907	7.21953424253365	0.101105713223324	0.6878467114055	0.917193226920892
Merged-chr8-40408112-3	chr8	40407629	40408629	+	716.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15686.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	3.07494034543486	2.96471529086391	3.19300014217028	2.74184785070725	2.95387614147313	2.98034131939057	-0.849275479226369	0.22763742239357	0.622808210644087
Merged-chr7-99469769-4	chr7	99469260	99470260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 2 of 6)	intron (NM_028145, intron 2 of 6)	3756.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	6.17804519162668	6.35308038583187	6.47434826977489	6.71016324437169	6.85679087889659	6.28052589404556	0.509089258505741	0.0876660808599705	0.392706285663334
Merged-chr11-72207504-4	chr11	72207000	72208000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026559)	promoter-TSS (NM_026559)	-18.0	NR_155066	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	6.07919377427238	6.39475743781086	5.93622921054018	6.09134787145068	5.97457863821958	6.09127724489637	-0.192121723801033	0.528846020635975	0.850585575598857
Merged-chr11-103989082-3	chr11	103988581	103989581	+	551.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22210.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	3.75107380794194	3.7531296826588	3.75533137451314	3.80172371762555	3.57838796216628	4.01675614669992	0.154616964983245	0.776810980848417	0.944892922631445
Merged-chr1-177260565-4	chr1	177260057	177261057	+	951.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11790.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	6.02137950051261	6.17570475397401	6.23443192897537	6.30867227198392	6.32109202450596	6.25414559778926	0.260073713375557	0.350337180838405	0.738366841617277
Merged-chr8-117342587-3	chr8	117342093	117343093	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6577.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.75314888162762	6.53931668030043	6.33768620946917	6.88858852640961	6.81844762454252	6.58888374688368	0.335999046718921	0.226230780611794	0.621140322788657
Merged-chr5-114658252-3	chr5	114657563	114658563	+	771.211121	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 1 of 15)	CpG	358.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	5.5820165997078	5.6082249814725	5.6877224850776	5.034407137274	4.70609773580379	5.10910011833475	-1.37697396381556	0.000152120951163011	0.00402214175544067
Merged-chr17-23975765-1	chr17	23975265	23976265	+	564.0	f1_c57bl6.idr	promoter-TSS (NM_013921)	promoter-TSS (NM_013921)	-535.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	2.89452600587814	2.7427588165125	2.85680198911021	3.44867562265734	3.17720070130794	3.46143310151875	2.5386365656761	0.000555757833752611	0.0114153290128085
Merged-chr4-137468620-4	chr4	137468106	137469106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008305)	promoter-TSS (NM_008305)	-197.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	3.88046751024816	3.69713157791527	3.41588502661941	3.79680289175437	3.30587429285645	3.66144083938618	-0.274660690493534	0.657846103345701	0.904859102731141
Merged-chr8-126666655-4	chr8	126666107	126667107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73171.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.97647868849401	6.77063908217787	6.95601118397919	6.70560113502521	6.446449101912	6.62583886663145	-0.485983525914851	0.0627392155325012	0.325725628378883
Merged-chr7-25266465-2	chr7	25265965	25266965	+	597.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	4.01522481375298	3.60366826525355	3.82674223344181	4.56101963343294	4.15562807460858	4.50210174097597	1.67791796621541	0.00162722998892793	0.0263780543383431
Merged-chr16-45274765-2	chr16	45274259	45275259	+	677.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	50422.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.64065666959522	2.57027512624157	2.81638994013746	3.28384945701297	3.5286258404035	3.48474092200174	5.02606940544604	5.13113708497768e-06	0.000226379456292059
Merged-chr10-81319215-6	chr10	81318628	81319628	+	896.525024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-1975.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	4.49564149945844	4.20719613661343	4.2678805253996	4.20386790871642	4.04982163538156	4.14962868788691	-0.549278831436632	0.24297990397702	0.64023154153456
Merged-chr5-120513530-1	chr5	120513030	120514030	+	840.0	f0_balb.idr	intron (NM_001177595, intron 2 of 13)	L2a|LINE|L2	2338.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	7.68740943061587	8.1648627731112	8.197873987229	7.98589224239799	8.26908220377448	8.08112510487779	0.11988893766743	0.632148817104629	0.895435008062156
Merged-chr11-22930292-3	chr11	22929760	22930760	+	777.866638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	ORR1B1|LTR|ERVL-MaLR	-41745.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	3.11190741428687	2.81715578672194	2.95657914424428	2.71927758103088	2.65022298103707	2.72000590896402	-1.43965847919798	0.0537284296208109	0.297190398982147
Merged-chr3-89387818-3	chr3	89387321	89388321	+	779.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-150.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.81101797804198	3.68465563101652	4.30976025652975	3.89604484412862	3.37373195628601	4.41319880082327	0.0154247788856193	0.981300573087289	0.995690081075595
Merged-chr19-4962128-5	chr19	4961700	4962700	+	943.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025553)	promoter-TSS (NM_025553)	-106.0	NM_025553	66419.0	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	6.26860185583494	6.62772803554292	6.17910126591041	6.54920663069031	6.32791708552616	6.03048423883272	-0.0897052000474487	0.774953943981958	0.944517829695789
Merged-chr4-150543831-1	chr4	150543331	150544331	+	617.0	f1_balb.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	108343.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.16606870422743	3.70919634333082	4.50714085966088	4.51861263346536	4.68296157620689	4.07581275769064	0.754953954679647	0.179439696765901	0.560971531728926
Merged-chr2-91054910-2	chr2	91054410	91055410	+	678.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008948, intron 2 of 11)	intron (NM_008948, intron 2 of 11)	894.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	5.57932268490769	5.79799130476709	6.0957217349582	5.52520798920377	5.626948965204	5.56339932805658	-0.468263670093556	0.162396133535997	0.535842287006085
Merged-chr18-49777658-4	chr18	49777146	49778146	+	846.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22045.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	3.09758070234367	3.5320025067492	3.03791645318213	3.3879852016488	3.48035727336794	3.3010874019428	0.55899024790252	0.412140170069243	0.784314318706468
Merged-chr12-69451111-2	chr12	69450601	69451601	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24449.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	2.74197268560664	2.83019226714812	2.61759281207332	2.89992653321814	3.25229404151598	2.95662575460309	1.54721671774182	0.0436994973090215	0.262765412060201
Merged-chr7-110060016-2	chr7	110059516	110060516	+	760.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1686.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	5.14142019649034	4.73156331467449	4.62121833910409	4.72003839759532	4.98991171883231	4.85195387762468	0.00426505119181703	0.991944503989933	0.998351577134218
Merged-chr7-107683829-4	chr7	107683315	107684315	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-8028.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.58256698303535	4.71872885000703	4.8122314909168	4.54534992811425	4.34552091111352	4.5297078564514	-0.569074535212222	0.178163431271712	0.559276830911593
Merged-chr11-97994764-5	chr11	97994211	97995211	+	948.9381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207231, intron 2 of 5)	intron (NM_207231, intron 2 of 5)	1462.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	5.04905729289642	4.76895215024503	4.88813000249258	5.35312505646263	5.15179564277722	4.87648947188484	0.512073159998488	0.192147381834081	0.57915668143339
Merged-chr10-127669465-2	chr10	127668965	127669965	+	904.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045171)	TTS (NR_045171)	2342.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	4.29958319159247	3.87742826767678	4.16103792189683	4.4463154137371	4.09101811018334	4.36364570402341	0.493131483147622	0.32269936909302	0.71605919099688
Merged-chr6-97381047-2	chr6	97380576	97381576	+	918.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D10|SINE|Alu	78210.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.10949179601153	2.9980701646658	2.97306140147131	2.9550721674394	2.99024025538453	3.38078949277767	0.379488364424692	0.580969319091694	0.873185386905448
Merged-chr3-152763554-6	chr3	152763015	152764015	+	939.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025662, intron 9 of 10)	Lx8|LINE|L1	49415.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	4.27670386495898	4.39817692272797	4.27589595348326	4.31472271574446	4.18735585565758	4.38757026055684	-0.0776071109121249	0.863542419403096	0.968269312109804
Merged-chr6-39067395-3	chr6	39066907	39067907	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040523, intron 1 of 3)	intron (NR_040523, intron 1 of 3)	179.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	2.54188752515795	2.58831370568583	2.79424694482418	2.29077867400015	2.3618391880686	2.43975646511545	-1.77745146860285	0.0370513309857579	1
Merged-chr3-119815280-2	chr3	119814780	119815780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-31892.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	4.49498688376721	4.61645660827229	4.1175743256048	4.50910222528804	4.40937844808293	4.47418862834823	0.0593939063561849	0.897538702288758	0.976055448838318
Merged-chr5-124539434-2	chr5	124538934	124539934	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1357.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	2.81816169346499	2.74371893819255	2.97379647239137	3.26408433191476	2.87958632532462	3.27490460002378	1.42797017096008	0.0473831231006347	0.275694229089678
Merged-chr2-166041897-4	chr2	166041408	166042408	+	980.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	49271.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.37116952982648	6.18555486405034	6.03958787539507	6.33365416988422	6.1869255274718	5.87664793327999	-0.0967504404187313	0.752139776112118	0.93809248920437
Merged-chr19-40682666-3	chr19	40682102	40683102	+	751.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	22832.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.20731999188924	6.09711448227911	6.74075365610092	6.60599442810644	6.5745860193104	6.79915367375705	0.471622561913136	0.126106025241933	0.47490518888123
Merged-chr18-38372659-4	chr18	38372178	38373178	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33685.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	5.9879628762059	5.90620267931076	6.02585995110903	5.55461736363251	5.93139141594755	5.95191981856073	-0.257379945531502	0.412679838288942	0.784551818322662
Merged-chr4-139175430-4	chr4	139174911	139175911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033543)	TTS (NR_033543)	5244.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	7.29606346997423	7.14128849032719	6.93076024166933	7.40149223146154	7.6236141845833	7.01835003566528	0.364591155984147	0.187738596138516	0.572987312749648
Merged-chr1-154034874-2	chr1	154034374	154035374	+	670.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	134945.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.07308653462223	5.9175798475242	6.04843380604608	5.17189424749137	5.22155196300939	5.60971326753882	-1.26122069325557	0.000156142104762304	0.00410610480311004
Merged-chr7-132765053-3	chr7	132764559	132765559	+	751.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11857.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	5.49933921184658	5.04204977775391	4.759241060978	4.94841368575806	4.44690950124194	4.90639414308667	-0.789301642978026	0.0805707939527102	0.375560731791894
Merged-chr14-51092389-3	chr14	51092018	51093018	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	1441.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	5.74632509283587	5.97270726449014	5.53871884529043	5.16248724271559	5.29954631156938	5.22131303944625	-1.03474836830301	0.0026973647495662	0.0388577434352327
Merged-chr12-3361491-2	chr12	3360991	3361991	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-3641.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.84155572326855	3.7767663308488	3.88454528372133	4.58964977551332	4.50730770027992	4.55677428328662	2.04925254663005	2.13862209682781e-05	0.00077235445934396
Merged-chr7-29518652-4	chr7	29518138	29519138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13178.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	5.0784118395986	4.86944587950442	4.92853439434915	5.13503660086544	4.73137985216003	4.99377183220268	-0.0124705571570275	0.97474850175031	0.994346221126257
Merged-chr4-125113259-2	chr4	125112759	125113759	+	899.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290701)	TTS (NM_001290701)	14622.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	3.47430077991515	3.05984713322031	3.48111908060409	3.57656407014382	3.50288197195975	3.38549651829888	0.535387026095486	0.399132069558397	0.775688105708038
Merged-chr5-137831298-4	chr5	137830821	137831821	+	928.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153510, exon 3 of 7)	exon (NM_153510, exon 3 of 7)	4957.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	6.0518595910725	5.99072964186299	6.32675512093325	6.06622711272648	6.19464314136479	6.38562696531232	0.162090286525065	0.586263549033664	0.875449865187773
Merged-chr17-33758146-4	chr17	33757632	33758632	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 1 of 4)	intron (NM_008997, intron 1 of 4)	2354.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	3.942273336014	3.86537302846236	3.90705698993307	3.74079030780755	3.64746890371035	3.97558063468986	-0.383318853827698	0.465781415544735	0.817213965217222
Merged-chr18-78021407-4	chr18	78020915	78021915	+	961.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 36 of 43)	intron (NM_001195633, intron 36 of 43)	35853.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	4.7457006080697	4.40431238549163	4.25655496384267	4.83155088402819	4.61226863605478	4.5597746177847	0.431403005793884	0.339965580547347	0.729651423203685
Merged-chr2-75774699-2	chr2	75774199	75775199	+	804.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-57478.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.52849171585265	5.40010529841088	5.61505161393497	5.62841398955318	5.60259283429891	6.07030631565287	0.482786250621062	0.15686170219105	0.527743349341456
Merged-chr8-11635148-4	chr8	11634650	11635650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030781)	promoter-TSS (NR_030781)	-114.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	6.11652633848145	6.52326438103464	6.41694331836824	6.15395495899096	6.04209641040875	6.02748750514654	-0.480914690070776	0.103412739982517	0.428607227191219
Merged-chr2-150859879-4	chr2	150859370	150860370	+	879.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-17300.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.33659808344861	5.4192495202495	5.41642376647665	4.99864572817614	5.59809879179144	5.42037648438642	-0.0368569097459596	0.920950785604102	0.982463724790289
Merged-chr9-119064575-4	chr9	119064110	119065110	+	845.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	11832.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	3.62571047909275	3.65218331817577	3.54894915474446	4.0157220914684	4.2418283967058	4.27142702556295	1.78682376970403	0.000832764880270296	0.0156196733249081
Merged-chr18-9509062-3	chr18	9508571	9509571	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCCTG)n|Simple_repeat|Simple_repeat	-58917.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.21957001214	3.90618703592723	3.54404041875007	3.93860576116798	3.75369106148369	3.89960183626065	-0.194604970123511	0.734719892380993	0.932597635580944
Merged-chr12-71821362-4	chr12	71820826	71821826	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9742.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	3.53113977307835	3.28082600976321	3.53859441085522	3.47394056108595	3.13370163271604	3.55681160256421	-0.223106780597288	0.722486859907623	0.928821151735982
Merged-chr10-57784126-2	chr10	57783626	57784626	+	738.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-797.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.86482552657429	6.1467295176064	6.24270971030355	5.4192022018283	5.8495715009141	6.08466858719116	-0.493486090824	0.152307300040694	0.520263755512759
Merged-chr14-19995811-3	chr14	19995325	19996325	+	750.522217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-18576.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	3.66190818425532	3.77955967060783	3.97172994800483	3.45844529146805	3.41748189590388	3.80838515099334	-0.828719761584791	0.151124831921211	0.51850548468168
Merged-chr3-90451027-3	chr3	90450555	90451555	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008727, exon 22 of 22)	3' UTR (NM_008727, exon 22 of 22)	14811.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	4.26490713055279	4.41358458537099	4.35951011200942	3.84359846980898	3.85854212598395	3.96697418846819	-1.34517418663311	0.00569083200704446	0.0670902167245899
Merged-chr17-29032056-3	chr17	29031576	29032576	+	964.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-584.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	8.51068974927435	8.88928070063944	8.26770143511406	8.37432716414737	8.73282737328625	8.39168695348365	-0.101715011064913	0.693138731149882	0.918830576287622
Merged-chr10-62448708-2	chr10	62448208	62449208	+	592.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	-452.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	4.43366622735359	4.53268330820677	4.19564511527583	4.45778537786943	4.60530546275874	4.16430948451776	0.0777182060404426	0.869072531431825	0.969772902205443
Merged-chr8-119837988-4	chr8	119837522	119838522	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2557.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.7844907156762	6.78919627613134	6.52128116331763	6.46525239929894	6.81311055149289	6.16971007019685	-0.290260527775629	0.340057196237573	0.72967866276074
Merged-chr11-70790033-4	chr11	70789561	70790561	+	937.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001045526)	TTS (NM_001045526)	22500.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.52902832817917	6.45789124133146	6.56248360000627	6.5982673959836	6.82521665194429	6.92445311752786	0.431334231919039	0.101208556569674	0.424271327273384
Merged-chr2-43727822-4	chr2	43727313	43728313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21011.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.28590018233197	5.30211996204066	5.22030281107941	5.08741076988923	5.39017216174602	5.4372504276538	0.0805443501520803	0.819771685047552	0.957288083214325
Merged-chr5-36796153-4	chr5	36795663	36796663	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026242, intron 1 of 1)	CpG	591.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	7.81374523785906	8.12657932013827	8.06469952115334	7.85530682590718	7.90093215543345	7.90729190304656	-0.171117578434941	0.440801641507341	0.801983666124386
Merged-chr13-44869625-4	chr13	44869119	44870119	+	990.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 3 of 17)	LSU-rRNA_Hsa|rRNA|rRNA	132477.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	3.05693042651378	3.29744309131305	3.35781311179359	3.35133779161099	3.15245070301428	3.31883793819234	0.135258424242313	0.831524456853592	0.960464332375456
Merged-chr7-29007422-4	chr7	29006935	29007935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 101 of 105)	intron (NM_009109, intron 101 of 105)	24581.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	7.25297311043091	7.51522559873966	7.40361064597776	6.0364907493381	6.2810901760689	6.04991977591991	-1.96833172859908	6.18794838440224e-13	1.23474054956677e-10
Merged-chr8-56076037-3	chr8	56075546	56076546	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	135221.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	3.38079101656117	3.41448860005174	3.60226770809199	3.65736584686497	3.55145962828111	3.82058868162669	0.755605314316367	0.186464120851554	0.571038204837541
Merged-chr9-25401096-1	chr9	25400596	25401596	+	773.0	f0_balb.idr	Intergenic	RLTR26|LTR|ERVK	-80501.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	2.54075988628194	2.84193328796089	2.98191919650455	2.77800536705428	2.57870556310605	2.9975475528697	-0.0300688590141144	0.969518840217121	0.993175393991947
Merged-chr9-45208814-2	chr9	45208302	45209302	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4727.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	3.31047320920909	3.27207541637923	3.13063826012875	3.04524958453098	2.87897510118481	3.47665889894817	-0.369872555968674	0.59830615059629	0.880740525056455
Merged-chr2-129630694-4	chr2	129630234	129631234	+	854.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35272.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.70286011912657	4.84283998075519	4.79765321875955	4.63321479096131	4.7043209514854	4.74910487587593	-0.203261934510328	0.6085759166905	0.885006356798728
Merged-chr13-78044101-2	chr13	78043601	78044601	+	855.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	19199.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	3.44341886692961	3.54977651131172	3.78465283809497	3.68820383249349	3.51692338367286	3.7055627224067	0.148422723536429	0.793793792516017	0.950531747588938
Merged-chr7-100492570-2	chr7	100492070	100493070	+	756.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-788.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	6.5695632267768	6.45298470683528	6.67318755090712	6.37776266884862	6.31853247380405	6.52002320998957	-0.262542196768256	0.328538468651935	0.720742147158907
Merged-chr5-76906055-4	chr5	76905547	76906547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	-533.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	8.16454262697154	8.49894744151974	8.33544501909107	8.40004911270648	8.69347199782823	8.21371088001266	0.162428642696236	0.498441035010554	0.833865667012175
Merged-chr4-43039065-8	chr4	43038509	43039509	+	883.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1292.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	5.36393598409259	5.10445198394801	5.18452330321718	5.3447061979632	5.41537883810264	5.2819009870414	0.257696774060185	0.461161034625938	0.814940478468229
Merged-chr18-46162042-1	chr18	46161542	46162542	+	745.0	f0_c57.idr	Intergenic	RLTR11A2|LTR|ERVK	36776.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	2.54779192151515	2.5114548320355	2.40476879111075	2.61476095395395	2.69332881130599	3.08922178392044	1.76915944842428	0.0339848068198508	0.225530433173695
Merged-chr19-60941986-3	chr19	60941498	60942498	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	52249.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	3.63367436799772	3.64628681387322	4.12801037889962	3.48495959484109	3.51585305842606	3.93758478231016	-0.525766478534056	0.379198341439265	0.761692149345267
Merged-chr7-75686738-4	chr7	75686233	75687233	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-161605.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.65479379585375	6.74821083628451	6.46796445251797	6.43040192110175	6.64897610319363	6.5984048156398	-0.114938444694256	0.667838507476743	0.908904406845465
Merged-chr2-5895413-4	chr2	5894895	5895895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356411)	promoter-TSS (NM_001356411)	37.0	NM_021305	57743.0	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	6.16043217202858	6.03895216233394	5.84156907022791	6.16653772842464	6.15589053097463	5.95428598630371	0.1250974315304	0.674950134722726	0.911915870652561
Merged-chr14-63116070-2	chr14	63115570	63116570	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6392.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	2.99744485906978	2.96827770777117	3.11165244999387	2.75885819940296	2.55771605472302	2.89485995509143	-1.507530427796	0.0463861945084808	0.272537548233249
Merged-chr2-58534571-4	chr2	58534090	58535090	+	968.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	26820.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	3.51532572080755	3.47755213438656	3.70401445141716	3.29141920698776	3.54950584432639	3.51724290632599	-0.3782489300932	0.520662683054411	0.846662720861138
Merged-chr15-73421512-4	chr15	73421023	73422023	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1668.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	4.16339960196972	4.25032874302915	4.25028661934323	4.53487806908231	4.05266914129357	4.36272086759996	0.283382325972462	0.553890571196566	0.862575362378324
Merged-chr1-87654887-2	chr1	87654387	87655387	+	552.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	L1MC4|LINE|L1	34575.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	4.22177944442282	4.2844192934886	4.37629572451202	4.35634536744464	4.36047413822359	4.35679077139631	0.177637011099911	0.688844608575287	0.917235946766438
Merged-chr10-128807359-2	chr10	128806859	128807859	+	651.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359824, exon 2 of 7)	exon (NM_001359824, exon 2 of 7)	1683.0	NM_001359824	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	4.52251681043657	4.46693007409426	4.52159333574097	4.51043935956872	4.21389144366892	4.66623285848609	-0.0972368117135531	0.827675473183217	0.959499015069944
Merged-chr9-105123511-2	chr9	105122982	105123982	+	839.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	8323.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	5.02562788538175	4.80260214625434	4.97422767478309	4.88164528627485	4.84440806010672	4.60919319662513	-0.319531883452755	0.42082971452388	0.789927346042947
Merged-chr12-100838719-2	chr12	100838219	100839219	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	59662.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	3.71396050805271	3.87320617718587	4.07134069156394	4.2276276957285	4.25759703262649	4.31750268622425	1.11538424520007	0.0242267448311454	0.18322659370205
Merged-chr11-63827629-6	chr11	63827141	63828141	+	945.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94643.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.8508532903778	3.93587413271556	3.88072713938771	4.32481417012707	4.2702281361787	4.33179483416991	1.20274136358106	0.0123873932207348	0.116809861186639
Merged-chr5-62751880-1	chr5	62751380	62752380	+	557.0	f0_balb.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	14297.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.19484716742716	4.10936943256196	4.20201493267525	3.68953909827583	4.02481076928434	3.8350349162804	-0.89663161122515	0.0830274901113722	0.381226701603597
Merged-chr4-139379679-1	chr4	139379179	139380179	+	763.0	f1_c57bl6.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-980.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	4.90539675486256	5.09957852135521	4.91528730712911	5.02907455815655	5.23939814004828	5.59119836666656	0.655619458484181	0.0915747718452694	0.402843395184502
Merged-chr2-156839988-4	chr2	156839499	156840499	+	842.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173396)	promoter-TSS (NM_173396)	-8.0	NM_001291124	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	4.97486898637402	3.94891656877525	4.00862079261956	4.47850533036648	3.99150050748475	3.85276984683795	-0.693889534756783	0.4719679333714	0.820417342888691
Merged-chr1-95268191-2	chr1	95267691	95268691	+	701.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45437.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	2.54183255864899	2.62926195588388	2.55680678774226	2.2858126023718	2.24323460708621	2.30373070224421	-2.10997473349046	0.0171301443814097	1
Merged-chr13-111942958-2	chr13	111942458	111943458	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	75022.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.12806284352894	4.00529429065292	4.01873539230703	3.83981694500662	3.68193917664659	3.94254136454358	-0.732558011825984	0.15147079283643	0.518929380900567
Merged-chr15-80261355-2	chr15	80260855	80261855	+	841.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_175109, exon 3 of 4)	exon (NM_175109, exon 3 of 4)	2951.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	2.29489434245308	2.3278787862093	2.47775508547459	2.30515305715327	2.08815222559724	2.48986958024787	-0.434166605116327	0.624661246053742	1
Merged-chr13-46728951-1	chr13	46728451	46729451	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-1102.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	4.86800211049482	4.7204539843299	4.73586887149496	4.94197887122934	4.79429400924317	4.50236002778525	-0.0239845221238478	0.953690505948277	0.989446911725587
Merged-chr14-40928712-3	chr14	40928176	40929176	+	841.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	19533.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.40784769861399	5.43860866310917	5.82533868352708	5.41834552293208	5.0114976647088	5.48554790513982	-0.486732234584038	0.192772247996653	0.57980094745366
Merged-chr5-91962379-4	chr5	91961893	91962893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028429)	promoter-TSS (NR_028429)	163.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	8.36479684357512	8.40534700029989	8.26482514373685	8.4229572890015	8.51989721986346	8.24337205126488	0.0793261405704278	0.707076086667476	0.923210943689232
Merged-chr9-118649642-4	chr9	118649137	118650137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	42928.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.96933597404045	6.5845423984531	6.89004554252218	6.79687565343107	6.56427605050804	6.46204700505187	-0.320142536966191	0.250427552956357	0.647793571871562
Merged-chr5-117319190-4	chr5	117318694	117319694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033311)	promoter-TSS (NM_001033311)	-72.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	5.29984182159289	5.23306551465239	5.21324605805332	4.93657841290222	4.66642697439923	4.93500782154035	-0.877134794474549	0.01923032867009	0.157336989968618
Merged-chr13-56611319-4	chr13	56610817	56611817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	1731.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	6.90790473990218	7.31051212976849	6.84150595102306	7.52013336509498	7.62590694429165	7.0059349341336	0.559360064460036	0.0565638325141378	0.30666068665814
Merged-chr9-21759594-2	chr9	21759094	21760094	+	992.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151673, intron 1 of 4)	B1_Mus2|SINE|Alu	709.0	NR_151672	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	2.7214585774409	2.49829095504125	2.39517207123825	2.52937012227264	2.4243469053057	2.66554218859825	-0.054281127169659	0.947080205987338	1
Merged-chr18-4635337-2	chr18	4634837	4635837	+	832.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081963, intron 1 of 3)	CpG	408.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	2.87690638194191	2.61316546301624	2.95377913633371	2.7876966834022	2.29439693149477	2.59689706225202	-1.33703651122006	0.138416772942157	0.497188985235095
Merged-chr18-34373343-8	chr18	34372963	34373963	+	937.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007874)	promoter-TSS (NM_007874)	-48.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	6.22870248541631	6.3155761875062	6.22989057681843	5.95499468363025	5.88241349673623	6.10232578809823	-0.48850504028295	0.0867526616720054	0.390230739714003
Merged-chr12-108808209-4	chr12	108807696	108808696	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009537, intron 2 of 4)	intron (NM_009537, intron 2 of 4)	14885.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	4.0749949005513	4.16817931641525	4.54060507275758	4.09637429451283	3.90667897589444	4.20173734456708	-0.563207279248706	0.260942279340803	0.658521360261207
Merged-chr7-102029281-2	chr7	102028781	102029781	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 5 of 8)	intron (NM_029211, intron 5 of 8)	-11126.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	3.23376183681489	3.09074849455061	3.3643156958333	3.26799543228822	2.88486831130726	3.32770621714154	-0.255789097484918	0.706948998766743	0.923161381966479
Merged-chr7-19498898-2	chr7	19498398	19499398	+	696.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9433.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	5.01286154841454	5.3068287429749	5.15926017107136	5.67937339972084	5.85966630627761	5.57106395009802	1.05864363037541	0.00221128232630798	0.0333387171240142
Merged-chr16-78576745-4	chr16	78576243	78577243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-55.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	7.6298118535859	7.80507871460457	7.49952644422746	7.91860130670404	7.88823921243769	7.65542238498623	0.250334834166669	0.282722279222402	0.680653764525711
Merged-chr10-14054831-2	chr10	14054331	14055331	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88452.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.28432063303536	6.51355124350567	6.35781916332608	6.07032866301703	6.25646152709957	6.21961656894903	-0.341868370579551	0.223467936201417	0.618171194869911
Merged-chr10-60291456-2	chr10	60290956	60291956	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	6995.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.01035514330283	3.81501924356273	4.08049161213514	4.19169437022828	3.79978460832108	4.23729904789469	0.334390375436975	0.52068900021991	0.846662720861138
Merged-chr14-67715864-4	chr14	67715342	67716342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110162)	promoter-TSS (NM_001110162)	-1.0	NM_175384	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	6.16423411054086	6.07741754273763	5.97174209591989	6.26549755426086	6.32016097056065	6.23336314651111	0.331809951249507	0.237189613691041	0.633631301431805
Merged-chr19-6084986-4	chr19	6084468	6085468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	7.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	6.9814510426308	6.84507333840954	6.65407330883448	7.31654086718662	7.31566380537875	6.98017828009623	0.575861725885763	0.027563504269202	0.197988955734786
Merged-chr8-105991021-4	chr8	105990535	105991535	+	838.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176913, intron 1 of 11)	intron (NM_176913, intron 1 of 11)	738.0	NM_001301204	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	3.7545423036992	3.63836644234304	3.52049204431489	3.57213961219102	3.61546672696706	3.5357654809445	-0.24049904296602	0.667534242337759	0.90879890451381
Merged-chr2-129593941-5	chr2	129593400	129594400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	731.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.82575646934682	9.16880213217411	8.90486938008588	8.92253402004803	9.2061943583654	9.09205023246143	0.1405661371625	0.518313055110021	0.845156513047069
Merged-chr5-121842119-4	chr5	121841618	121842618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5259.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	7.20370084996689	7.2557473018149	7.12901393927243	6.65367194403029	6.85754119855544	6.59636024320599	-0.738793964876006	0.00324639925537216	0.0447429516209443
Merged-chr3-85592892-4	chr3	85592393	85593393	+	720.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	18764.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.00493865657125	3.0636168152756	3.04779434926533	3.0424266397925	2.898589979995	3.00098279046895	-0.277787904947778	0.677086999444561	0.91268374750576
Merged-chr14-61860866-4	chr14	61860361	61861361	+	854.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-178488.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.8245220837563	5.8292607498685	5.656312878791	5.53186067578783	5.62377130442675	5.54922237799276	-0.380286618457271	0.226392024953054	0.621334771828409
Merged-chr16-48994726-2	chr16	48994226	48995226	+	609.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	538.0	NM_172616	224171.0	Mm.24491	NM_172616	ENSMUSG00000033031	C330027C09Rik	AA408511|AU018569|Cip2a|Kiaa1524	RIKEN cDNA C330027C09 gene	protein-coding	4.08429075788801	3.88307704257016	3.72134336149234	3.90298993342093	3.97143550495896	3.68006834635051	-0.143290512441626	0.790786353744381	0.949600977347493
Merged-chr9-118617486-4	chr9	118617007	118618007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	RLTR11C_MM|LTR|ERVK	10798.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.82009363043874	7.73038786786909	7.39662785770127	7.59062036476924	7.76203828480674	7.21346168879615	-0.168075009801347	0.530314495051918	0.851072941285938
Merged-chr6-97407552-3	chr6	97407039	97408039	+	870.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	51747.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.00475434597236	5.85054105733223	5.81534590993551	5.79189473531341	6.07170389795282	5.79974119990846	0.0146580376316375	0.962236671680976	0.990802868210603
Merged-chr10-68280099-4	chr10	68279557	68280557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.33692929092759	7.35878152240654	7.23914541126187	7.51830161259444	7.77303087079068	7.13148937566046	0.291544214213178	0.272359604498218	0.669663338532819
Merged-chr11-114685588-2	chr11	114685109	114686109	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	10141.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	5.05941125587007	4.75620515733634	4.60112733644957	4.81602003732506	4.71867990463525	4.48920195118414	-0.321340288353413	0.452659552321994	0.809456767794566
Merged-chr2-164677214-2	chr2	164676709	164677709	+	653.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-3122.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	4.4167316968582	4.16802110680991	4.14900036597894	4.72733774530811	4.41980867852417	4.53437352790412	0.804092487097616	0.0795898193014328	0.373114430882538
Merged-chr2-57114971-4	chr2	57114479	57115479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	59.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	4.33763365076944	3.92754433045818	3.87107527629572	4.4648444710146	3.96189241292388	3.94383553093807	0.22611505171086	0.679857105518162	0.914056754309378
Merged-chr14-51094610-2	chr14	51094016	51095016	+	791.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	B1_Mur3|SINE|Alu	-1484.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	5.0503663646981	5.47427639815905	5.11246577671766	5.24107770024829	5.32874933174251	5.46097649144909	0.214106432391135	0.561312170435858	0.865407801976397
Merged-chr9-108579402-2	chr9	108578902	108579902	+	766.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-732.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	2.83675748305795	3.03035343588784	3.30569735847111	2.68084324582837	2.5742347590507	3.11333778871336	-1.25831298967873	0.11735989251408	0.45745453395379
Merged-chr10-84424059-3	chr10	84423549	84424549	+	960.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	16422.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.13429504230902	4.77348654660257	4.99889013092212	5.05060349544507	4.89500139433535	4.8812323986112	-0.0682034623011209	0.860809381906772	0.9676427717189
Merged-chr6-31176551-4	chr6	31176047	31177047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41927.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	7.96003215852201	8.02117732528597	7.52759701832312	7.79592780459095	8.09194353594533	7.69316091500371	0.0229105652288645	0.929334741719345	0.984055753795234
Merged-chr5-110424365-4	chr5	110423852	110424852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	24151.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.08393838141723	4.12603128395244	4.27145454969473	4.50445550664488	4.39014108247561	4.42639249046243	0.761313234175046	0.0912491852324581	0.401997770565695
Merged-chr6-39006857-3	chr6	39006335	39007335	+	757.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1F|LTR|ERVL-MaLR	60751.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	6.13179277023002	5.88440994737415	6.02816386475535	5.98873226058095	6.28871191668621	6.21727998367034	0.266375631401172	0.370789388822925	0.755054550130175
Merged-chr4-59003175-4	chr4	59002685	59003685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033165)	promoter-TSS (NM_001033165)	-8.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	5.91629459572914	5.80010040788968	5.87632678159059	6.13921230455676	5.38099607201592	5.7624177082412	-0.122287072915733	0.731405488979309	0.93137425473257
Merged-chr7-122125299-2	chr7	122124799	122125799	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289844, intron 4 of 12)	intron (NM_001289844, intron 4 of 12)	7647.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	3.33483822768136	3.19353671912585	3.06554099184581	3.04295895471017	2.93688540740596	3.52273443876124	-0.0688432800080502	0.921954781663845	0.982542868764899
Merged-chr13-66906106-4	chr13	66905615	66906615	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026219)	promoter-TSS (NM_026219)	700.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	5.54149778968095	5.4263818255187	5.78982200121999	6.50657145976334	7.06822077459829	6.44565838576769	1.92046847930034	5.01598682387982e-09	4.89296871795302e-07
Merged-chr13-17944270-4	chr13	17943772	17944772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019491)	promoter-TSS (NM_019491)	-55.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	7.60567058848234	7.28107743993231	7.33152062519565	7.6311806596235	6.97673917149791	7.16281341641013	-0.188752435521875	0.507578104545807	0.839252820186144
Merged-chr2-163054532-4	chr2	163054028	163055028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008652)	promoter-TSS (NM_008652)	-107.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	2.90623763239016	2.98086919622075	3.20691041645539	3.19260849415702	2.94584251524278	2.80083143397821	-0.188303462290419	0.79257294300363	0.949977808464961
Merged-chr7-119897533-2	chr7	119897033	119898033	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029610, intron 1 of 3)	intron (NM_029610, intron 1 of 3)	1241.0	NM_029610	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	2.83325851861563	2.85597649172962	2.817379161286	3.04043591845962	3.00182163832195	3.18317998204194	1.147739519921	0.0966761647693335	0.414586935944272
Merged-chr10-94337764-1	chr10	94337264	94338264	+	843.6666869999999	f0_balb.idr	intron (NM_001359762, intron 1 of 4)	polypurine|Low_complexity|Low_complexity	25815.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.56428522393438	5.96814029465146	5.66546673416887	5.5900271863811	5.48828369865585	5.53138603339117	-0.398157695583771	0.230691317406705	0.626398744902006
Merged-chr10-41303831-4	chr10	41303327	41304327	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-586.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	6.49257075065441	6.97402486795179	6.77993546717673	6.87638784965377	7.34653420716077	6.53072587322116	0.323193597936174	0.317565503767368	0.711393238140081
Merged-chr11-76088663-4	chr11	76088159	76089159	+	838.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026664, intron 13 of 21)	intron (NM_026664, intron 13 of 21)	-60877.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	2.42280805691014	2.41501898933994	2.59228055995185	2.36369946234742	2.24992169057912	2.34995015797183	-1.02102187250755	0.221087727603074	1
Merged-chr6-87488071-1	chr6	87487571	87488571	+	1000.0	f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	8256.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.90877448200641	2.62802657366357	2.94587369285163	2.94470226020335	2.74423017750598	3.13164232378041	0.542323697428167	0.465116475526503	0.816812893261207
Merged-chr9-44638802-2	chr9	44638302	44639302	+	577.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	33910.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	2.50981308767389	2.57758125082507	2.79952910543452	2.61231506822366	2.58587232478044	2.75372221647322	0.111043134251829	0.884644814215395	1
Merged-chr12-32794839-2	chr12	32794339	32795339	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-25496.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	2.98767766814952	3.15584369676399	3.33167214974539	2.77384948846485	2.90944017144061	3.01677064911451	-1.21000168759978	0.0869166739722801	0.390674298178775
Merged-chr1-177179850-3	chr1	177179357	177180357	+	695.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	68910.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.46351471409947	4.54459788594163	4.62969741045872	4.7765780784526	4.59690251633758	4.53079006969387	0.237718109624563	0.56964962114688	0.8688875602138
Merged-chr5-86065546-5	chr5	86064973	86065973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007683, exon 1 of 19)	5' UTR (NM_007683, exon 1 of 19)	110.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	7.25360416658109	7.08556667807672	6.9101238321885	7.01816458882583	7.07853706791065	6.78441934048694	-0.186521692282043	0.469629727504396	0.819030003012138
Merged-chr13-67484225-4	chr13	67483740	67484740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076791)	promoter-TSS (NM_001076791)	13.0	NM_001076791	408067.0	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding	6.32349068768048	6.57567877324155	6.79920950763162	6.38891369525097	6.6848554888394	6.50924104921734	-0.0536817517510185	0.85232061306043	0.965371685862846
Merged-chr7-16047882-2	chr7	16047392	16048392	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-23953.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.73497556821321	6.3663908627254	6.68528185266095	6.59302847392641	6.29700863319386	6.6330363923645	-0.151209444049267	0.59823368634673	0.880699378545974
Merged-chr5-134638023-2	chr5	134637523	134638523	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	intron (NM_033561, intron 1 of 6)	1386.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	4.85150283214307	4.92607253773866	5.09516944675532	4.72350037125172	5.04530242030923	5.06023765437976	-0.00398420149814826	0.991862781094338	0.998351393644539
Merged-chr2-6378939-4	chr2	6378441	6379441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	26205.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.38195721838513	5.46238808462586	5.39238733767074	5.28356981488755	5.23521866148181	5.16679420397734	-0.362448187449931	0.286018103790022	0.68342985932029
Merged-chr6-128133861-3	chr6	128133329	128134329	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	9749.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	5.28993899393342	4.93776430380029	5.24342474614746	5.28072366000777	4.94092910437464	5.2442067207194	-0.0133545195230257	0.972052619020065	0.993868590220018
Merged-chr10-117906637-4	chr10	117906066	117907066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18893.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	8.31038838340353	8.40780069187424	8.04900246755948	8.12896328878499	8.68262602887486	8.11941283015346	0.10948889890641	0.675593763725076	0.912222606322798
Merged-chr4-3834206-2	chr4	3833682	3834682	+	618.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026147, exon 4 of 4)	3' UTR (NM_026147, exon 4 of 4)	1473.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.804558390972	3.10853054957577	2.90787682100332	3.16964436391821	3.08649713669988	3.33056877057121	1.09177376800706	0.117297428962746	0.457331522238446
Merged-chr7-64000510-2	chr7	64000010	64001010	+	974.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-61595.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.83976673053226	5.28890089058001	5.16404171366726	4.84488046773393	5.18957899252346	5.09561806128787	-0.117738611296282	0.765715013212605	0.94223032859205
Merged-chr4-149143772-3	chr4	149143283	149144283	+	852.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6183.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	3.2617856316564	3.44453323408292	3.72867709172107	3.17594744213853	3.19770566638939	3.3421901786159	-0.976210352893436	0.123877158515263	0.471070188601109
Merged-chr11-22672108-3	chr11	22671567	22672567	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159784.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	3.28149115450931	3.22148980202164	3.15908645382328	3.11877944858353	2.99358025081521	3.55259225109164	0.0555442065170917	0.934365791580737	0.985707838096286
Merged-chr5-96855964-2	chr5	96855464	96856464	+	794.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	62579.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.17925058759599	3.90827842870222	4.30117867192952	3.61423192251175	3.44776261598346	4.02634324779577	-1.34338170219761	0.0199393265180737	0.161094424790356
Merged-chr4-151933632-4	chr4	151933111	151934111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172704)	promoter-TSS (NM_172704)	-109.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	6.67233334108533	6.27731590893635	6.41122612324509	6.82426920701299	5.87862421879382	6.39579122232569	-0.0663163027512995	0.851791902107935	0.96531854415899
Merged-chr5-9069066-4	chr5	9068579	9069579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31658.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	4.01093859807103	3.95349657740456	3.9102087584244	4.0300573005802	3.78086758396987	3.82514889189207	-0.242857573380175	0.634063083509719	0.896257959648637
Merged-chr10-88740049-3	chr10	88739557	88740557	+	682.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 4 of 5)	ORR1D2|LTR|ERVL-MaLR	8643.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	2.74115702003586	2.96745933952139	3.19981094347873	3.06916940966346	2.85144163475754	3.10516052685285	0.147862052287134	0.836679173079655	0.962001762335242
Merged-chr4-125089979-3	chr4	125089489	125090489	+	670.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151472, intron 3 of 7)	intron (NR_151472, intron 3 of 7)	4855.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	3.88967007333103	3.83446047761747	3.84937124642514	3.56499821425228	3.5964188663223	3.86944555670595	-0.605004031411037	0.261687540466071	0.659457534066706
Merged-chr14-70578517-3	chr14	70578019	70579019	+	988.3333130000001	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001360474, intron 1 of 2)	intron (NM_001360474, intron 1 of 2)	420.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	7.57055297589522	7.84651583426291	7.16037673058756	7.25198285346501	7.24765423350353	6.77229317411447	-0.659546890878527	0.0257089894906509	0.190066068195298
Merged-chr10-120197763-4	chr10	120197265	120198265	+	779.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	3832.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	2.63626719576068	2.73593390888895	2.68649265998854	2.8808983372928	2.71110204422388	3.17035813048039	1.22037111863788	0.105866475437783	0.434365814889403
Merged-chr2-75775399-4	chr2	75774893	75775893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56784.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.89517313888058	6.6141098765388	6.56527428684123	7.06492696294942	7.14741458631526	7.27988953558215	0.701097609192134	0.00690423706303665	0.0773263668410175
Merged-chr10-34112477-3	chr10	34111971	34112971	+	730.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15501.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	3.80127677559653	3.63660362092098	3.57168987543285	3.44579003826939	3.31376723294721	3.84375741941178	-0.459717850568984	0.445320510776702	0.805096431670068
Merged-chr5-151021022-3	chr5	151020523	151021523	+	646.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68416.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	2.14888779164362	2.54952212863067	2.26592966801133	2.40540791392979	2.43951467371912	2.53837445504862	0.772266433179876	0.391280729602498	1
Merged-chr10-60753358-2	chr10	60752858	60753858	+	899.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-576.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.29925176108146	5.37909615422394	5.78723992499043	5.52487261170029	5.65031906499033	5.5681648447938	0.175989349650106	0.611359705161056	0.886052016077495
Merged-chr3-97227728-4	chr3	97227212	97228212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029933)	promoter-TSS (NM_029933)	-348.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	6.035711469927	5.53455278526251	5.89327951154506	6.48124086403856	6.29931857674232	6.09660958543338	0.804198902235544	0.0127037812213881	0.118997661586093
Merged-chr13-52620874-2	chr13	52620374	52621374	+	746.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 4 of 14)	exon (NM_001198977, exon 4 of 14)	23992.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.19416690616412	3.958025143964	4.29135255160125	3.85493287428181	4.11972428390613	4.3983200003056	-0.0375890453874024	0.94150957784157	0.987024728112131
Merged-chr6-55416178-3	chr6	55415702	55416702	+	828.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	19315.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	2.38612045328757	2.43702546884711	2.49427771840689	2.2253147407958	2.27561837928864	2.3119309181981	-1.12777930390048	0.182351544954751	1
Merged-chr2-158502488-1	chr2	158501988	158502988	+	739.0	f1_balb.idr	promoter-TSS (NM_145635)	promoter-TSS (NM_145635)	-124.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	3.0036708426975	2.92453099444932	3.17821977821882	2.87889524217694	2.98906075386753	2.83752332882145	-0.596472288814317	0.392497223572244	0.771172125304963
Merged-chr1-120532712-4	chr1	120532194	120533194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27670.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	6.31479846664516	6.18352758800515	6.11247748537942	7.07102766155054	6.81681543712144	6.80355841385033	1.10574532176196	4.59727755625197e-05	0.00147070461707272
Merged-chr5-64834436-4	chr5	64833936	64834936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30913.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.24515064643818	5.89117593251194	6.00101742373766	6.0853189666125	6.00577518840731	6.25233755581699	0.0923233083331851	0.760351228536613	0.94072272518104
Merged-chr11-23048374-5	chr11	23047894	23048894	+	793.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35007.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	3.0958325307824	3.44823417681051	3.32549649749306	3.07087378750686	3.12399477308224	3.228704026707	-0.664913629834744	0.305973877612814	0.702020471196356
Merged-chr6-17734254-4	chr6	17733749	17734749	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289624, intron 1 of 15)	RMER1C|Other|Other	-9343.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.04107320516892	3.27658971660834	3.17804513764547	3.11263711248717	2.85180081144274	3.13484968071205	-0.605488224261874	0.37205070791731	0.755997445123458
Merged-chr7-81235299-3	chr7	81234802	81235802	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	21498.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.95786081475832	4.28522479415132	4.85528247841418	4.49007033513676	4.1845445724024	4.50126382860352	-0.821158607350554	0.0885049899478634	0.394891050650535
Merged-chr1-160919593-2	chr1	160919080	160920080	+	679.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024952, intron 1 of 19)	intron (NM_001024952, intron 1 of 19)	13169.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	3.30542099946831	3.48630927742626	3.63673420443946	3.47327259717049	3.1618234210116	3.44710041928409	-0.43961167692492	0.477406306959968	0.823237639056184
Merged-chr5-142445794-2	chr5	142445294	142446294	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-18137.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	2.34485918856139	2.5392337186039	2.57228724422166	2.39606605542403	2.13624114626699	2.64604835225507	-0.482233483516283	0.593661776174106	1
Merged-chr10-121488292-3	chr10	121487826	121488826	+	858.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12076.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.13858850312943	6.16438502328156	6.13951359933414	5.41397792064854	5.61546426852634	5.76429020476397	-0.97514896389559	0.00150894676042567	0.0248413063418101
Merged-chr17-35122103-4	chr17	35121577	35122577	+	818.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	-24.0	NM_001303446	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	7.36355193810824	7.79233969629925	7.64850734195601	7.36602009116824	7.68910371026496	7.44180606468106	-0.148921130881194	0.557227557825366	0.864114619124975
Merged-chr1-176799077-2	chr1	176798577	176799577	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	8047.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	3.05418935004473	3.48705399229091	3.20374920115327	3.34825596404103	3.38151448755092	3.65557931835092	0.760098393868166	0.245080494294318	0.642381314494918
Merged-chr13-49324469-4	chr13	49323962	49324962	+	977.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15254.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	4.53692893742453	4.4050677104667	4.86736006364229	4.4668279514975	3.90294361770865	4.86531304038119	-0.353779132006543	0.509440986863093	0.840312531170666
Merged-chr16-75900380-3	chr16	75899880	75900880	+	555.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	8886.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	3.17695333883743	3.20833283200155	3.28947492210703	3.44338152138456	3.06721353470482	3.24733652088817	0.148840863782215	0.81628045339938	0.956616423430214
Merged-chr3-154428527-2	chr3	154428023	154429023	+	763.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	97702.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	2.88756591279167	2.84169753525305	3.0120394944826	2.91152429479747	2.88830495402589	2.84486136656793	-0.139544466198675	0.840173988776967	0.962819298477451
Merged-chr2-167360234-3	chr2	167359738	167360738	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11060.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.14994058541161	3.36263934178144	3.34579234840739	3.55159795206022	3.46013312687968	3.41767754732188	0.73724945137263	0.221929562779634	0.616788023295903
Merged-chr9-119895447-4	chr9	119894932	119895932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026236, intron 1 of 18)	CpG	537.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	6.96671481159039	6.36814542728983	6.79720268162351	7.27906707382474	6.26859941965401	6.43003428294278	0.0193147154893619	0.95881059437677	0.990162613547306
Merged-chr4-53082689-2	chr4	53082189	53083189	+	807.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	intron (NM_013454, intron 15 of 49)	70809.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	5.51958770212286	5.37931284356289	5.54695377848837	5.64118870971882	5.63036107360843	5.00536865535337	-0.0156318215513779	0.966717163392359	0.992349609766636
Merged-chr10-19957985-4	chr10	19957489	19958489	+	925.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	MLT1A0|LTR|ERVL-MaLR	23463.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.24103793368637	6.36840489688167	6.25294482043936	6.00784172978411	5.98927058128105	6.16999218245986	-0.406157329919076	0.149875962852771	0.516435278990118
Merged-chr6-42433755-4	chr6	42433260	42434260	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207028)	promoter-TSS (NM_207028)	-775.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	2.9966015284028	2.72833331940628	2.80365449137588	2.57788120580136	2.56327083841053	2.6240107432466	-1.47103231031847	0.0573989834321513	1
Merged-chr19-32784173-2	chr19	32783673	32784673	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	RLTR11A2|LTR|ERVK	26596.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.02628853510823	4.11177159607921	4.33672305652367	4.21939563511834	4.2583384373306	4.27444150355367	0.263289636010069	0.574118491437756	0.870523174873875
Merged-chr5-5368931-4	chr5	5368408	5369408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	11343.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.38705505273832	4.61654370494538	4.44995247816566	4.81081231791642	4.55807563810716	4.60329511263788	0.411016573843998	0.336085716622427	0.726127668050063
Merged-chr7-144553281-2	chr7	144552781	144553781	+	777.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195086, intron 1 of 31)	intron (NM_001195086, intron 1 of 31)	448.0	NM_001033319	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	6.42378663977047	5.80534571551594	5.98372912748843	6.3633900486771	5.61437523266254	5.76607128971363	-0.243878110163994	0.519476672337238	0.84582839931823
Merged-chr4-43479102-2	chr4	43478602	43479602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4607.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	6.59491212445802	6.86732931801785	6.75233535795046	6.99226012347005	7.17911690297273	7.15342070630074	0.564406671052005	0.0256264236421977	0.189708492741991
Merged-chr1-55215630-4	chr1	55215135	55216135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028713, intron 1 of 8)	intron (NM_028713, intron 1 of 8)	11147.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	5.25279564489851	5.36706317570806	5.49228298862463	5.53226123921042	5.18038039387736	5.58171190996992	0.125085780811352	0.724496814070986	0.929418317431141
Merged-chr15-78588429-2	chr15	78587929	78588929	+	949.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6840.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	7.13877195068963	6.82086215100375	7.08322108567891	7.37834064235607	7.4204830472594	6.91908858935681	0.374205741510237	0.168980253366771	0.545615402489031
Merged-chr16-32164589-4	chr16	32164130	32165130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	964.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	7.38383600481676	7.81184707109943	7.665019660809	7.67461106967655	7.96295742392453	8.09280212330987	0.412346159426549	0.103286955934601	0.428408405832524
Merged-chr19-55491483-3	chr19	55490995	55491995	+	874.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	175438.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	2.91503697780313	2.88172067383421	2.99661588077519	3.81910925429093	3.75606015364334	3.8685354458347	4.45783790030804	4.15027462627595e-07	2.49700687710173e-05
Merged-chr14-20695172-7	chr14	20694681	20695681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001168273)	TTS (NM_001168273)	213.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	8.46397383127095	8.6349714077436	8.39061176957365	8.06594027032553	8.42512557519927	8.39446708180025	-0.274660110386069	0.223483096556315	0.618183620832347
Merged-chr16-57495894-4	chr16	57495381	57496381	+	897.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-53361.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.80391647366748	6.90440589193391	6.7100537132467	6.76392432325133	6.95068314365687	6.98815048762396	0.138982107022937	0.581958952962967	0.873484978987509
Merged-chr10-37156474-4	chr10	37155976	37156976	+	872.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17550.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.59042327530446	4.74548845165572	4.42889539401571	4.54286737920461	4.46618171681141	4.45230536960267	-0.284048127533638	0.507174746681337	0.838895570055974
Merged-chr16-28911703-4	chr16	28911282	28912282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	17916.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	5.63330689795927	5.94515247780892	5.79478029223165	6.24763952783769	6.37114824070568	6.07581655616042	0.769081997490471	0.0115792945255429	0.111503771818022
Merged-chr7-98181297-2	chr7	98180797	98181797	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045971, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-3023.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	2.84836018565476	2.36365010078507	2.28267367857964	2.4934649527602	2.3581091850458	2.63021465581151	-0.153840362546774	0.865600202722274	1
Merged-chr15-84244856-2	chr15	84244251	84245251	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	12708.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	4.64285235254625	4.66579738718938	5.09068566411459	5.09863097349941	4.6937277721795	5.12251330280112	0.384243819884406	0.365399972332935	0.750554219997502
Merged-chr14-105297497-3	chr14	105297021	105298021	+	872.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	38848.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	4.45966678401819	4.9003147193191	4.81414540217283	4.08005947926221	3.95329727370827	4.02671871386545	-1.92431384407928	6.2700438181444e-05	0.00191315660440102
Merged-chr12-35535069-4	chr12	35534570	35535570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013464)	promoter-TSS (NM_013464)	-81.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	6.34497429307354	6.24496215891583	6.14799347721377	5.94531789025108	5.70498372789649	5.75286496566169	-0.777165692766378	0.00873233978535914	0.0916846093198945
Merged-chr6-29217508-2	chr6	29217008	29218008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1144.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	6.09530836322074	6.29077012706623	6.42449847206473	6.16143188313852	6.38133154312524	6.03595673683648	-0.0973476958809491	0.743012490347479	0.935418021527742
Merged-chr7-28014132-3	chr7	28013639	28014639	+	909.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254951)	promoter-TSS (NM_001254951)	-24.0	NM_001254951	100043772.0	Mm.129275	NM_001100456	ENSMUSG00000096916	Zfp850	C130069I09Rik|Gm4636	zinc finger protein 850	protein-coding	4.19652108015091	4.42234506591243	4.23977310619583	4.40920460721564	4.4425407076653	4.21337773721796	0.190668471970426	0.676732542754007	0.912549881054299
Merged-chr17-73942733-4	chr17	73942231	73943231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7465.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	8.65046420268496	8.79355110538505	8.12805626372181	8.42745215575051	8.76117801997168	8.05566461828477	-0.146963983811938	0.609428174102399	0.88517286252283
Merged-chr11-70803047-4	chr11	70802539	70803539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	9522.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	7.5378902015024	7.43924578521336	7.45483681718081	7.5022457492153	7.96794252951751	7.51184666486008	0.306692475731521	0.223598011032829	0.618357594456915
Merged-chr17-33930995-7	chr17	33930509	33931509	+	997.985718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1115.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	5.86773912995622	5.76659949190224	6.0088856823264	6.11244704787979	6.3113303271449	6.21875230070681	0.591426113880012	0.0431713137062214	0.260738816205797
Merged-chr2-120309413-4	chr2	120308899	120309899	+	954.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024145, intron 7 of 19)	intron (NM_001024145, intron 7 of 19)	4766.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	3.57609988905985	3.39042325750361	3.16704134425122	3.40998573328733	3.29349918657297	3.47536138759587	-0.0167463968433971	0.97861390534297	0.995160277495735
Merged-chr13-55183352-2	chr13	55182852	55183852	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-26430.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	4.69166718891554	4.43294954218126	4.44034505562846	5.20553797676663	5.33631256404224	5.0787681497154	1.52467606921991	0.000154201095781455	0.0040693830567026
Merged-chr9-59353415-4	chr9	59352900	59353900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153195, intron 1 of 15)	CpG	108.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	5.09136768480953	4.89480269197105	5.40393661104945	5.02791379604971	4.84245963823698	4.96798979028667	-0.405477036262789	0.301783157850035	0.698491599398769
Merged-chr2-144215468-4	chr2	144214965	144215965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26175.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	6.16236984747137	5.78776952665241	5.55762138353826	5.99774702923032	5.92398923496505	5.81912457586253	0.0795983064838167	0.811493322212789	0.955303137357202
Merged-chr4-154927327-5	chr4	154926865	154927865	+	889.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178931, intron 1 of 7)	intron (NM_178931, intron 1 of 7)	712.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	6.31791040830942	6.60858888622457	6.60159928805835	7.10880382664837	7.36859498580485	7.02304050625103	1.03598808906339	0.000107217676254821	0.00300830814480677
Merged-chr13-62620944-3	chr13	62620455	62621455	+	735.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173381, intron 1 of 2)	intron (NM_173381, intron 1 of 2)	3227.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	3.49121441039451	3.33238917949504	3.57772965670515	4.32930772303709	4.14174836229367	4.25233922241001	2.62477537775966	3.9584114835288e-06	0.000180425820046501
Merged-chr16-23280648-4	chr16	23280168	23281168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	L3|LINE|CR1	-9802.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	7.37867343961636	7.28140405889755	7.21052216419053	7.24259300824702	7.53185403471101	7.42547570950928	0.167439812876679	0.481004376903862	0.824891904452147
Merged-chr4-122887127-4	chr4	122886628	122887628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1052.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	6.29781982071394	6.75608235757815	7.02631726766113	6.71647389199126	7.0318106442819	7.16777007195268	0.405851303494353	0.191211026654513	0.577822466760773
Merged-chr18-34889053-4	chr18	34888597	34889597	+	967.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27890.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	3.61488244865172	3.52456627725423	3.57890032199642	3.63365022930511	3.46914782751982	3.4272092609034	-0.211610847089919	0.710008511981004	0.924168386336004
Merged-chr3-27259674-2	chr3	27259174	27260174	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-57403.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	2.83242055831704	2.8245009332247	3.06261349906391	3.26290831062472	2.93291828476373	2.82652559731611	0.542743981057297	0.451295481951811	0.808957790071745
Merged-chr14-54258663-2	chr14	54258165	54259165	+	637.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-567.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	4.37028710648697	4.55767068944622	4.58309405468518	4.95995516380084	5.11372165558463	4.69301002364571	1.02650098957202	0.0138977693467072	0.126163087383479
Merged-chr17-48347484-4	chr17	48346993	48347993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031254, intron 1 of 4)	intron (NM_031254, intron 1 of 4)	1092.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	5.7318922958577	5.81297546975197	5.78413411194894	5.57081337260641	5.64230387974106	5.48880588503158	-0.370059502059581	0.237596277162577	0.634122003684586
Merged-chr2-133497979-4	chr2	133497471	133498471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54188.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.68200425145803	6.6612690726448	6.5261542397642	6.26423587917678	6.5220300570186	6.7006028843957	-0.202439168695885	0.463696467557771	0.816038286358001
Merged-chr17-34633881-2	chr17	34633381	34634381	+	761.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4195.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	5.94880188460755	5.69803093051928	6.10190445705863	5.97073687015175	6.0004875259017	6.35409449906438	0.334283636407766	0.293404765243545	0.690274364012239
Merged-chr18-53270873-2	chr18	53270373	53271373	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	L2|LINE|L2	25211.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.12301737483214	2.90354108506716	2.83874000368103	2.82652028228874	2.644096826901	3.09111407394305	-0.492345825908719	0.51121553225082	0.841331921585713
Merged-chr11-101979584-4	chr11	101979071	101980071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5220.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	5.95649571881824	6.06054691696347	5.87077049878028	6.03998699132655	6.14925723782696	5.95686895802717	0.151272276958109	0.606713139932038	0.884254358240743
Merged-chr12-8946607-2	chr12	8946107	8947107	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-1322.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	3.35548384648377	3.48895237268742	3.27316814461494	3.35390628929726	3.30022109080849	3.40249096120187	-0.120419126129826	0.841497784151256	0.962968253158457
Merged-chr10-63429576-4	chr10	63429084	63430084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-514.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	5.87193392732061	6.21086437394352	6.08776560832792	5.8855107856919	6.17054213452463	5.94292277622695	-0.0881338088304335	0.774917996959851	0.944517829695789
Merged-chr10-13833986-4	chr10	13833547	13834547	+	958.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	34910.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	5.69677068446292	6.07444606773199	5.57367510068488	6.37195678278694	6.43280549923315	6.0888791021257	0.854958958871141	0.00866472266388328	0.0911847913759227
Merged-chr3-84228365-2	chr3	84227865	84228865	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7488.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	5.05396985098699	5.13972709938153	4.59689003730718	4.69780898752633	4.71092672383726	4.62137698987974	-0.640809852411356	0.126397146852609	0.475300963888672
Merged-chr9-62998028-3	chr9	62997557	62998557	+	763.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17178.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.30800502647339	4.3778517898909	4.4408791700741	3.93013619155524	4.21752257381173	4.87968320880935	0.0703884050725863	0.896790263371276	0.97587199430405
Merged-chr15-82346069-6	chr15	82345637	82346637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	91.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	7.52845789298182	7.55240571662535	7.55341970057505	7.46758920790966	7.70015117246092	7.42679765283814	0.000263509480913044	0.999083219423708	0.999864283693757
Merged-chr2-181917632-4	chr2	181917178	181918178	+	978.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53318.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	4.84083743620744	5.07707026026576	4.758556398439	4.71213249673951	5.01280309560845	5.17765883836317	0.152600452257306	0.706676403304055	0.923092605686828
Merged-chr17-27790199-4	chr17	27789682	27790682	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	30360.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	5.41858259517753	5.33332825735292	5.5970571239532	5.77525115012388	5.76692925373481	5.73836254755361	0.592636372721463	0.0638942177730176	0.32937922510732
Merged-chr1-80397579-2	chr1	80397079	80398079	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48353.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	3.02015192515622	2.91157546801464	3.06446183859384	3.05844613235831	2.98770009505204	3.13625145523254	0.279813474301989	0.673060814891839	0.911138585323922
Merged-chr2-167757598-2	chr2	167757098	167758098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66421.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.47949819991139	3.07589783555844	3.6497538556849	3.56888403917077	3.54252634596551	3.66924221570208	0.63155688127745	0.319847695844904	0.713757799658401
Merged-chr13-56335558-3	chr13	56335037	56336037	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27363.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	5.57700939496605	5.96210757374034	6.14697629978126	5.45477156631072	5.33031271240811	5.87183304768096	-0.636943344962756	0.0799291014911711	0.37386815879911
Merged-chr5-21130583-3	chr5	21130106	21131106	+	823.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-45673.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	6.32185255405049	6.1088618782094	6.06568465486782	6.29519506773796	6.48635522512538	6.37691851292192	0.3583846155465	0.204755591844993	0.595418441540442
Merged-chr18-69570497-4	chr18	69569991	69570991	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	224331.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.33097290006735	5.32931242923849	5.07365779463792	4.76709102671291	4.8375698546508	5.17172635775074	-0.70057943940752	0.0670929551289324	0.338599372656964
Merged-chr6-124661765-2	chr6	124661265	124662265	+	663.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1339.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	5.49073970434093	5.25222154413603	5.16139537461156	5.61446863757715	5.41738832425428	5.26133365529427	0.248855215096816	0.484514861235463	0.826950947113562
Merged-chr7-16071068-4	chr7	16070568	16071568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347559)	promoter-TSS (NM_001347559)	-777.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	4.94698146443296	4.99325362126028	5.22278186877398	5.1884931865468	5.57880298563351	5.12014036824301	0.562846838333042	0.138944059933838	0.497943722067999
Merged-chr11-9531406-2	chr11	9530906	9531906	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	L1MA8|LINE|L1	339464.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.24662419544584	5.1522220577754	5.22431510471977	5.34210127888813	5.48579097520191	5.68608046297205	0.587407875424879	0.0889880180135183	0.396238829286072
Merged-chr12-41238315-4	chr12	41237825	41238825	+	977.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	214235.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	4.92892597078354	5.29380449378601	5.1172428567588	4.91511467015696	5.05252651298119	5.30660522760304	-0.0643331238377207	0.867189072710014	0.96931826298411
Merged-chr4-123749870-1	chr4	123749370	123750370	+	1000.0	f0_c57.idr	intron (NM_023423, intron 1 of 4)	CpG	429.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	8.26653950007832	8.40254107677781	8.31419642006829	8.29311610573282	8.34315754178024	8.37577177572301	0.0101899466756711	0.959814516956146	0.990242512723989
Merged-chr2-129596103-4	chr2	129595594	129596594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	632.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.7082226165665	8.74619341202511	8.53081948878422	8.25833106238668	8.81028289197083	8.21387978472023	-0.27733708880654	0.274813526065659	0.672203259945391
Merged-chr15-91260150-3	chr15	91259647	91260647	+	759.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-68140.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.58026187792473	3.64961993985808	3.45883708031914	3.39313339398454	3.39081244060021	3.68855408210237	-0.288012397564856	0.622288920293741	0.891053569604973
Merged-chr8-111052379-4	chr8	111051865	111052865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146217, intron 15 of 20)	intron (NM_146217, intron 15 of 20)	-3974.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	5.458442966334	5.63541507098871	5.78901003503202	5.61540862843606	5.65792404510894	6.2269584728009	0.40656964578206	0.252883965574652	0.650266355806288
Merged-chr19-12445197-4	chr19	12444690	12445690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-15589.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.74258970122958	6.53810959687424	6.1768285560434	6.26591270832728	6.43117935951836	6.40271494688779	-0.242382169892557	0.411791510767254	0.784045307489855
Merged-chr9-118667625-3	chr9	118667111	118668111	+	872.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-44081.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.61247364213578	6.57780087259796	6.61144618935787	6.57068105436328	6.71806132808679	6.53267665714389	0.0262681013576651	0.918909627009447	0.981850582276524
Merged-chr12-86893218-4	chr12	86892712	86893712	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8398.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.0746211396756	5.66994134214845	6.07901925548706	6.77166076483067	6.66473449772512	6.6010827552756	1.21425991196595	3.44676842708005e-05	0.00115784702172175
Merged-chr14-30522990-2	chr14	30522490	30523490	+	786.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133761, intron 9 of 9)	intron (NM_133761, intron 9 of 9)	-26141.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	3.03335219971918	2.86525687625059	2.92296728213218	2.89323841920278	2.75429976576716	3.11161602317773	-0.105918076395325	0.881118467504412	0.97262624933271
Merged-chr4-129882218-2	chr4	129881718	129882718	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24008.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	5.72381398037928	5.93918992327001	6.00586402996693	6.08268877833361	6.18239595977991	6.31214266084818	0.520955477375579	0.0796010270750026	0.373114827378616
Merged-chr10-57720926-2	chr10	57720426	57721426	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	L1_Mus4|LINE|L1	-63997.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	4.76380811173984	5.0071261617922	4.98909027717948	4.83253431368905	5.09149876700841	5.30679026097444	0.348394257756542	0.376043492697222	0.758951282467405
Merged-chr1-43520324-2	chr1	43519824	43520824	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 2 of 4)	ORR1C2|LTR|ERVL-MaLR	74573.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.95834846884911	5.13667395286874	5.12977680621546	5.14069215881698	5.25545297901091	5.12656300785006	0.219314160980558	0.542809069940195	0.857370348607164
Merged-chr4-141159597-7	chr4	141159079	141160079	+	896.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	11657.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	5.93101750242963	6.22147163546702	6.52194712588055	6.48666858356225	6.64041658233957	6.49550161658721	0.507998806753647	0.0903329308248668	0.399639648451484
Merged-chr19-6972493-2	chr19	6971993	6972993	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2555.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	2.23861320625235	2.3358507686616	2.42001205867244	2.19528382019194	1.95578906074658	2.43204049595608	-0.842307141696751	0.390645863262338	1
Merged-chr9-50565342-4	chr9	50564848	50565848	+	898.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-4080.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	5.06691096750923	5.18672109619935	5.19055969777838	5.18821477334938	5.09926030785467	5.31616798394826	0.100784439178781	0.77724052358011	0.94505033369944
Merged-chr6-47830557-4	chr6	47830056	47831056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177882)	promoter-TSS (NM_177882)	-51.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	4.08290132564664	3.78301997107592	4.01499221868238	4.42710912011049	4.33600769104623	4.18284556346035	1.01550562295412	0.0379181079113468	0.240864945651374
Merged-chr2-31081812-2	chr2	31081312	31082312	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	B3|SINE|B2	14688.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.94921365104193	4.63144987174874	4.83819848329407	4.41932711157633	4.6064422698964	4.67679061494086	-0.569195544951104	0.174590536007346	0.55387428328355
Merged-chr13-119601486-4	chr13	119600972	119601972	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	B1F1|SINE|Alu	-22347.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.42502705530592	3.25642377020546	3.22830419225767	3.07953689077204	2.84299461808178	3.5653383008396	-0.441251051872029	0.542697066280862	0.857318248006765
Merged-chr7-4789116-10	chr7	4788671	4789671	+	897.6166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029384, exon 1 of 2)	exon (NM_029384, exon 1 of 2)	389.0	NM_029384	664968.0	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	4.71206406220097	4.22065430123144	4.09395626582498	4.36727364004258	4.00230563130493	4.11398209792805	-0.559475908434021	0.277663547207125	0.674855968126621
Merged-chr11-72608487-4	chr11	72607990	72608990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025985, intron 1 of 5)	CpG	1229.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	7.07618543274942	7.06124088491251	7.4338222783144	7.31792456632069	6.94219441816663	7.09956108314085	-0.101011839330127	0.703419503764417	0.922108924938678
Merged-chr9-25509845-2	chr9	25509345	25510345	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	RMER17B|LTR|ERVK	28248.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.33299554492241	7.13608844214458	6.83031518438775	7.09152132462876	7.02432892112305	6.61894583668477	-0.284404832218905	0.317239705141344	0.711181392710422
Merged-chr1-138174304-3	chr1	138173811	138174811	+	780.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	815.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	8.08769673926155	8.61055590595069	7.70102038857969	8.28731320619672	8.61530134010616	8.03336972662256	0.198744669382365	0.516553862425442	0.844296391152365
Merged-chr1-134303810-3	chr1	134303316	134304316	+	810.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 24 of 28)	intron (NM_001144855, intron 24 of 28)	13812.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	6.1170663451551	5.99857341321496	6.42132904792046	6.40730615402767	6.1249289304064	6.51467860923559	0.283170575611673	0.353192588511408	0.740535792477092
Merged-chr11-61457037-3	chr11	61456542	61457542	+	674.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3050.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	2.66389833009963	2.8858009079798	2.94170520479384	2.69534774496683	2.48591515479514	2.77784148719463	-0.973804548035443	0.208654433502452	0.599651784024869
Merged-chr1-11637236-3	chr1	11636732	11637732	+	823.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160369, intron 7 of 13)	intron (NM_001160369, intron 7 of 13)	223127.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	3.11942674904481	3.36058708269586	3.42690044564293	3.41743203966864	3.23822761054142	3.49722014509741	0.305147903004933	0.624009015633009	0.891774487190018
Merged-chr3-55354206-4	chr3	55353702	55354702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-107526.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	7.72447468609783	8.05592535819248	7.3300407041132	7.93897067207217	8.29324728494369	7.63877170820283	0.351124664826055	0.238676961190863	0.635433307313283
Merged-chr6-99666794-4	chr6	99666290	99667290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-19.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	6.24743317168156	5.99784072072782	6.36192452252379	6.27554037011381	6.161865397164	5.95631696620038	-0.0999043288266067	0.739139701462687	0.934160003144178
Merged-chr2-150838012-5	chr2	150837427	150838427	+	842.956665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356549, intron 10 of 13)	intron (NM_001356549, intron 10 of 13)	4643.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.3273214000385	6.29866014791791	6.62239798010428	5.6453721144837	6.13887334633524	5.60513088227965	-0.982850679298326	0.00359337826393853	0.048109061719356
Merged-chr11-116648698-3	chr11	116648173	116649173	+	806.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	5640.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	5.55376540213908	5.84231112666931	5.657628060636	4.94524392770846	4.78143880293185	4.85133580207713	-1.69646985816012	2.61200076142541e-06	0.000125920833926237
Merged-chr2-30548040-2	chr2	30547540	30548540	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47004.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.21920439215906	4.60874352832307	4.57114466872218	4.16409785109977	4.37377687227371	3.99970953516966	-0.72530120874999	0.140063096888904	0.500144629900091
Merged-chr10-70243299-4	chr10	70242789	70243789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1987.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	6.36199242234271	6.3917640177817	6.58621410379413	6.68409336089868	6.69716137102973	6.77088687249865	0.436546382777528	0.0938634087451482	0.408098365287193
Merged-chr8-25056678-4	chr8	25056213	25057213	+	871.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 9 of 11)	intron (NM_031257, intron 9 of 11)	-17751.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	4.40927914518497	4.44739385691995	4.79513164977673	4.43978905818335	4.63813134121374	4.96008859465523	0.32800345977188	0.465207304836329	0.816844646665488
Merged-chr2-30062638-7	chr2	30062157	30063157	+	974.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	661.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	6.86179192869586	6.91048788753625	7.4753653292824	7.06107684832192	6.7557050738596	6.97697001278204	-0.25997433261779	0.373666335263897	0.757529198534216
Merged-chr12-54960208-2	chr12	54959708	54960708	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	26128.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.6943270720365	4.92892751255711	4.89560046948624	4.95316646710267	5.16271332660189	4.76744065306801	0.311639493301519	0.434154245711477	0.79820505573484
Merged-chr4-144907481-3	chr4	144906985	144907985	+	644.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	14348.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.32327198910016	5.39778386421809	5.55565398411771	5.30602944058155	4.92399165844876	5.69286718355422	-0.182329504857721	0.642774150156851	0.899532469670737
Merged-chr2-129182884-4	chr2	129182398	129183398	+	888.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2225.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	5.12300311518965	5.19455748536279	5.41082780608333	5.63795619296919	5.4397533936755	5.32133958506128	0.473281166418327	0.176735270731349	0.557257318883504
Merged-chr1-181172591-2	chr1	181172091	181173091	+	553.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145514)	TTS (NM_145514)	21660.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	2.99932314486952	3.3431931578877	3.18929864027651	3.21962002477514	2.87486552897355	3.47695205410348	0.0998614499421725	0.888010743712691	0.97399637298939
Merged-chr6-125410670-4	chr6	125410183	125411183	+	930.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30179.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	6.06543274679527	5.92693478024247	5.32382592947301	5.59529325514607	5.52428452158737	5.20962196025219	-0.665334867503935	0.0791413167851167	0.371813600985602
Merged-chr16-62847087-4	chr16	62846586	62847586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026577)	promoter-TSS (NM_026577)	-46.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	7.14325739801945	7.03288887353995	6.32120857549343	6.93225245779142	6.88386196100102	6.62004088552473	-0.108077722822798	0.733979363731835	0.932325051544019
Merged-chr4-135876084-4	chr4	135875577	135876577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2231.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	8.67910239542801	8.60067385283049	8.22781750795352	8.74668779546925	8.88426168073934	8.27649437951144	0.201350026375312	0.438327692411294	0.800490069452335
Merged-chr12-70939666-2	chr12	70939166	70940166	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019785, intron 1 of 12)	intron (NM_019785, intron 1 of 12)	1809.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	3.10682923906167	3.13115390040061	3.03427394798768	3.12673592426708	2.88637167783589	3.10700137907675	-0.244083389276313	0.714785431285943	0.926044950792719
Merged-chr17-65613786-8	chr17	65613274	65614274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013933)	promoter-TSS (NM_013933)	-219.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	8.48927935438264	8.49066728239845	8.26995887176354	8.36055838927553	8.20588079535779	8.3859702928509	-0.150517864682312	0.476517925885397	0.82257619929543
Merged-chr2-77946044-4	chr2	77945571	77946571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 1 of 20)	CpG	285.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	7.99892773096907	8.33788895491709	7.66848397974652	8.23805626267966	8.3372119493017	7.79967305889877	0.15917532669348	0.568837250483736	0.868758065383828
Merged-chr11-115514463-4	chr11	115513968	115514968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008258)	promoter-TSS (NM_008258)	-75.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	6.66257045639676	6.32155288269229	6.63140623031143	6.69557972028398	6.66134820996774	6.70623864575203	0.227932961317297	0.396644939911421	0.773701467493871
Merged-chr2-153163706-4	chr2	153163217	153164217	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	2416.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.50607910223568	5.37856113274828	5.68347053411626	5.79665135731935	5.60205099031554	5.74518179990425	0.361783563069464	0.266750205632934	0.664188627163631
Merged-chr14-8100826-2	chr14	8100326	8101326	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	MIRb|SINE|MIR	2615.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.83859024003019	4.73688809824681	4.6106206743552	4.38308959084335	4.70767257017106	4.46159292671395	-0.47967638614392	0.264112497187696	0.661984744638823
Merged-chr13-45458237-3	chr13	45457734	45458734	+	711.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-49210.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.54393683300316	3.65685044411968	3.63074817477273	3.35234763646989	3.11338540527384	3.54548044423535	-1.03661723840793	0.0930569558484283	0.40637573119744
Merged-chr10-26752799-2	chr10	26752299	26753299	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19713.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.05965383315297	2.89283299147244	3.14695015706504	2.84540178055959	2.75268047226513	2.86915643841203	-1.0527943598485	0.136506402903382	0.493594108201959
Merged-chr10-82128100-6	chr10	82127655	82128655	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163064, intron 1 of 3)	CpG	142.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	4.28071542207522	4.51892624033564	4.44322792686841	4.29576294328781	4.35644832788209	4.66703226096068	0.0568229296421587	0.899867641140616	0.976728292075907
Merged-chr7-45715343-4	chr7	45714836	45715836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020011)	promoter-TSS (NM_020011)	-129.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	7.04707397045976	7.04496252850924	6.92900107305552	7.03060468640446	7.28486811969903	6.86925936877245	0.110872330612966	0.665536332230035	0.907855843812957
Merged-chr3-137869607-4	chr3	137869098	137870098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	L1MB2|LINE|L1	1923.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	6.35468163460235	6.39942822268737	6.42734149640122	6.54345282743361	6.59349897799196	6.37304292131216	0.197828534107426	0.457713978858842	0.81247258197983
Merged-chr10-20855193-3	chr10	20854649	20855649	+	921.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97398.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	3.64939761124214	3.53421110143099	3.45051868055568	3.59797845015021	3.62409043011331	3.68575528915193	0.290678872544724	0.603388024192666	0.882544198306255
Merged-chr17-65729788-2	chr17	65729288	65730288	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	L1MEg|LINE|L1	42964.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	6.06008230092928	6.14104505470593	6.22160036800042	6.10317595369293	6.33220418550347	6.28149264975552	0.180071487892658	0.525175081345186	0.848874487604023
Merged-chr11-53298718-2	chr11	53298218	53299218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008300, intron 1 of 18)	intron (NM_008300, intron 1 of 18)	1761.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	3.84581311000383	3.86596500735524	3.9315451052069	3.97344734631545	3.71360159945085	3.95195512811368	-0.00318970113726184	0.995069303635954	0.998961028701257
Merged-chr2-130424830-4	chr2	130424326	130425326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-185.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	8.30987860254822	8.50166566240399	8.03046191527454	8.12813929202152	8.21547788095888	8.15076089460247	-0.190461185342079	0.405674573733437	0.780363686906421
Merged-chr7-67225411-2	chr7	67224911	67225911	+	665.833374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357962)	TTS (NM_001357962)	2795.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.77444891109242	3.63436834906194	3.79959162005361	3.60199276428736	3.7903997425074	3.60836446544999	-0.196273546640759	0.719753382422727	0.927954251609574
Merged-chr5-139408129-3	chr5	139407637	139408637	+	941.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1750.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	7.36725776312283	7.69396301931548	7.67055820114821	7.47809311629862	7.71833987554689	7.61828742110935	0.0393428217107359	0.869500057793079	0.969798920359083
Merged-chr17-80008995-4	chr17	80008479	80009479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53289.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	3.36151969469327	3.22417456703717	3.33454987685424	3.26391632108278	3.35872144663762	3.23388361290129	-0.0643545792508282	0.916281906814484	0.981243905880233
Merged-chr12-3818153-4	chr12	3817647	3818647	+	931.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	10987.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.56203540839089	5.12571462035319	5.17499163287523	5.73503080210818	5.66575661678507	5.09277362914867	0.44309507836759	0.259887964135435	0.657467322969241
Merged-chr5-32197271-2	chr5	32196771	32197771	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER94|DNA|hAT-Blackjack	-35437.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	4.7517337003486	4.82213359007935	5.13836512475837	4.75898175296258	4.74199116664218	4.97542762898457	-0.182774730757027	0.649651796191419	0.902262496828066
Merged-chr8-60983323-4	chr8	60982806	60983806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	5.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	8.50890741417211	8.63026066189582	8.41216064861417	8.26865004320051	8.5664337105988	8.2004060088766	-0.223996491905061	0.317239371923331	0.711181392710422
Merged-chr9-78107882-2	chr9	78107382	78108382	+	650.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081490, intron 1 of 12)	intron (NM_001081490, intron 1 of 12)	774.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	6.13995730492636	6.01761664847257	5.94032263547819	5.87654205128084	5.78738333946895	5.6340540807727	-0.465185832180875	0.125179405188871	0.473472791806698
Merged-chr5-101950351-2	chr5	101949851	101950851	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	119570.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.08036527821736	5.03993884830996	5.01640645539702	5.62327494179279	6.02638157120534	5.08428394178824	1.17881769808191	0.00360955462100828	0.0482325069704284
Merged-chr9-5311928-4	chr9	5311427	5312427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	3078.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	4.24141081774815	4.44389676148877	4.32404953238543	4.21643923868129	4.20437992286702	4.06068914463657	-0.470638496053034	0.310285182818426	0.705829393476587
Merged-chr8-46152489-4	chr8	46151984	46152984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11167.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	5.76253556183212	5.17611892884524	5.26917344462198	5.60522285511963	5.12087374690125	5.3337336292404	-0.135824158605266	0.730164770088715	0.930759951830614
Merged-chr17-69218711-4	chr17	69218294	69219294	+	808.471436	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	58412.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	4.02226869700604	3.97148747911958	4.09911197144966	4.13102983879517	4.30722504589393	4.16761692860963	0.5178194867482	0.275837500416174	0.673242318833586
Merged-chr9-61021096-2	chr9	61020573	61021573	+	914.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	4004.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.38260004614756	3.43935929322506	3.51667770408574	3.4351360880091	3.48066264080834	3.9250261061695	0.638932012883694	0.285478468247122	0.682981379698291
Merged-chr18-82693023-4	chr18	82692530	82693530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177832)	promoter-TSS (NM_177832)	-296.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	6.93868313817356	7.07500840808637	6.9790352175181	7.13903085817824	7.10827011495917	7.1030500742429	0.176898896964558	0.4546518862179	0.810521063822265
Merged-chr17-85574778-3	chr17	85574276	85575276	+	888.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43620.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	3.48711533228308	3.30000268560198	3.27707069090334	3.22009112379917	3.13136214771873	3.34879954494088	-0.531915672750289	0.393472448349659	0.771604147212602
Merged-chr11-98959664-4	chr11	98959174	98960174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	-797.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	7.533986515992	7.26845703898067	7.31579493411496	7.44247563303481	7.60072692838951	7.12751110410571	0.051846426537386	0.839749040981649	0.962784121274377
Merged-chr13-108135931-2	chr13	108135445	108136445	+	760.875	f0_balb.idr|f0_c57.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	22680.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	3.37245356965558	3.46962050989134	3.37105263817496	3.11436540959917	3.0350390307557	3.27454568081029	-1.13336436679847	0.0738373433342395	0.357221795694831
Merged-chr2-91361439-4	chr2	91360948	91361948	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	83266.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	5.08008035351439	4.61571814107712	5.14411911689178	4.73522866176144	4.60116237796146	4.76069215459615	-0.597449974979991	0.156659245268554	0.527492086420024
Merged-chr10-8777699-4	chr10	8777208	8778208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	108362.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.92209259027621	6.76945925041789	6.78752686052896	6.71583754240195	6.66854739971257	6.78542497309006	-0.171665918403795	0.492842921813391	0.831208279358962
Merged-chr1-191352921-2	chr1	191352421	191353421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025864)	TTS (NM_025864)	26956.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	2.90150646873458	3.04673174706883	3.11667919092428	3.22719058603709	3.08255956122112	3.188688805435	0.640244012011989	0.330243912867056	0.721789606895393
Merged-chr10-81384308-4	chr10	81383813	81384813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-115.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	7.94092042110419	8.07202176093278	7.66922887624016	7.86964153537344	8.25118410591054	7.37418887603823	-0.0230137229455726	0.937822239586282	0.986165791448083
Merged-chr2-121506659-4	chr2	121506148	121507148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030234)	promoter-TSS (NM_030234)	8.0	NM_026220	67532.0	Mm.440764	NM_026220	ENSMUSG00000068479	Mfap1a	4432409M24Rik|Mfap1	microfibrillar-associated protein 1A	protein-coding	4.78611875466356	4.94635408099557	5.07415948845949	5.52466540959712	5.40215037101137	5.5359184575597	1.12960464104493	0.00157842276950526	0.0257171336998225
Merged-chr11-5949765-4	chr11	5949293	5950293	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010292, exon 1 of 10)	5' UTR (NM_010292, exon 1 of 10)	288.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	2.63374805944839	2.30209054406097	2.39793584045765	2.5125947318568	2.33210892408829	2.60192941750125	0.176593076320842	0.833730405453663	1
Merged-chr9-118613344-2	chr9	118612844	118613844	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	6635.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.21140089165651	6.38856456737403	6.46309278542359	6.34240913178974	6.3461467153173	6.43314937169498	0.0297521615344819	0.913298777269269	0.980560320145079
Merged-chr11-34036511-4	chr11	34035999	34036999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-10429.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.31889893863117	3.91262465096458	4.18652497207819	4.34560348205732	4.17714381835995	4.11246348338786	0.187404411797137	0.702494643212867	0.921908665861083
Merged-chr18-9732209-4	chr18	9731709	9732709	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24561.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.36675072377156	6.72796349104017	6.45244471637483	5.27164338109748	5.29781566651217	5.02754534843383	-2.34863394719714	5.29317733515469e-12	9.04383366947745e-10
Merged-chr19-21275866-4	chr19	21275373	21276373	+	795.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	3595.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	4.60284934724331	4.60663958886888	4.22221219172155	4.39482882194392	4.08834816654627	3.86069962470444	-0.945596924053566	0.0643966997699156	0.330821793817073
Merged-chr15-58876352-4	chr15	58875824	58876824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3675.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	7.77863713952556	8.11978783259151	7.78614890154919	7.51221157474654	7.89869619683299	7.65610886400313	-0.296126942659493	0.233821997197353	0.630121355137759
Merged-chr15-51689723-4	chr15	51689225	51690225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	175736.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	4.12439031917735	3.98185482286627	3.91462818740584	4.25330522682027	3.86868799478279	3.82506574624753	-0.0417217238898391	0.936230287057147	0.986037792257163
Merged-chr5-99358186-4	chr5	99357683	99358683	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-105256.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.50192247925499	6.58134130342831	6.63887358454094	6.29995681502346	6.63556234287104	6.41970101508641	-0.168248982338544	0.538780086147648	0.855475830625121
Merged-chr18-9708710-3	chr18	9708207	9709207	+	945.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1059.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.29722301064641	6.77043855123001	6.11677454375409	4.9478486895462	4.88223509395187	5.01437241560562	-2.80652750921631	1.38969158795005e-14	3.61354555156711e-12
Merged-chr8-82984676-3	chr8	82984178	82985178	+	914.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	121322.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.63378752371466	3.33618489977899	3.46385436020769	3.66208717009317	3.6223202325456	3.47896596176644	0.388957776892031	0.504545159074267	0.83776727323299
Merged-chr7-102565491-4	chr7	102564990	102565990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009277)	promoter-TSS (NM_009277)	-8.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	6.13344918122675	6.25686435827571	6.12667932702072	6.10557964865147	6.12065669906699	6.2288484305264	-0.0479996325478719	0.864263920717344	0.968269312109804
Merged-chr2-167944943-3	chr2	167944446	167945446	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	12619.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.79488344076417	5.54722803196664	5.63394042240864	5.67219828173938	5.51314484029061	5.58543089659208	-0.139248747279721	0.665723421694003	0.907920503949149
Merged-chr4-120854864-4	chr4	120854364	120855364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	65.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	6.03185637940557	6.13913979217283	6.21722206814763	6.16416905114722	5.85444959703199	5.87471798060226	-0.266758883183371	0.373566193778672	0.757529198534216
Merged-chr2-122028505-4	chr2	122028005	122029005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144545)	promoter-TSS (NM_144545)	-75.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	7.64317091360298	7.93691450113147	7.99983154804105	7.92963308691358	7.85108722304086	7.98350839834785	0.0773187710202727	0.734931582101829	0.932617455907478
Merged-chr5-105568783-2	chr5	105568283	105569283	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	49312.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	6.25429964253401	6.29482923698351	5.98680351571929	6.29128158263298	6.48487335646017	5.92205898781696	0.12413376374627	0.692612664580249	0.91870248759071
Merged-chr10-52234061-1	chr10	52233561	52234561	+	714.0	f0_balb.idr	intron (NM_001347444, intron 1 of 9)	CpG	442.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	6.34628066374467	6.26955455853369	6.11195694643451	5.95093964684228	5.2336306388383	5.46640092796293	-1.16996542777734	0.000938294050623137	0.0171364291844271
Merged-chr13-52589248-4	chr13	52588745	52589745	+	996.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5808.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.53251896099567	6.56411655742654	6.46586201711839	6.57275029290914	6.69901034353592	6.15413526677032	-0.0206984992604168	0.9430105580787	0.987229935665284
Merged-chr4-134703359-5	chr4	134702862	134703862	+	894.773315	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207237, exon 1 of 12)	exon (NM_207237, exon 1 of 12)	928.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	7.21888903463458	7.01953445900145	6.97009582115334	6.97194827244978	6.43306010226316	6.71578306531025	-0.547467092736851	0.0507490679054748	0.286946140373269
Merged-chr7-28812698-2	chr7	28812198	28813198	+	638.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 1 of 12)	intron (NM_177301, intron 1 of 12)	1808.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	3.6681334980402	3.70813122365492	4.10870540139592	3.86415522734002	3.69177597411487	3.85546375033392	-0.0981604581489856	0.857610651324554	0.966767080388296
Merged-chr10-40256941-4	chr10	40256438	40257438	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359493, intron 2 of 5)	intron (NM_001359493, intron 2 of 5)	624.0	NM_001359493	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	4.67201537761026	4.72348610862795	5.04277291001203	4.70139476671503	5.08402210988136	4.93688227586035	0.246430848975376	0.548129524432551	0.859504776665606
Merged-chr9-48981594-1	chr9	48981094	48982094	+	691.0	f1_c57bl6.idr	Intergenic	Intergenic	-3791.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	1.91919445214438	2.05927416304387	2.03184432945144	2.27984106817244	2.05602976295754	2.43768161822482	1.96655150484058	0.0444696628146311	1
Merged-chr14-49065735-4	chr14	49065233	49066233	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-816.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	7.46401158001422	7.73474377729327	7.45847937764307	7.46715645458728	7.23846361597586	7.3884453762866	-0.291283428474302	0.223773807050595	0.618518262184522
Merged-chr5-123427766-4	chr5	123427244	123428244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	32946.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.93840580907878	5.803646891039	5.91523918002634	5.66563310603763	5.71284674903369	5.75583041843462	-0.315604063438061	0.298200634871438	0.694997737442112
Merged-chr9-61983415-4	chr9	61982919	61983919	+	918.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	-36620.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.64321125396354	4.5298169244678	4.66998666501001	4.03097437515003	4.42999570679786	4.54120027128848	-0.661191790886452	0.151998907229805	0.519858592920945
Merged-chr11-108343960-4	chr11	108343485	108344485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011101)	promoter-TSS (NM_011101)	-97.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.6407924622636	5.01021227058625	5.05539122740872	5.52101077591837	5.29247095782435	5.32796516537133	0.205652048703757	0.60276942689079	0.882397657327329
Merged-chr8-115427592-4	chr8	115427102	115428102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	279292.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.13070777354656	5.89642867473839	6.03232357237167	6.00984042193331	6.05796370120279	5.87967650619694	-0.0544181341597729	0.854294285509909	0.965987623019113
Merged-chr7-128129441-4	chr7	128128944	128129944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-124.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	5.96610414961311	5.53315302550257	5.23062538052484	5.5424523442363	5.47557437256434	5.22505964900935	-0.371878430326728	0.329996672094693	0.72162759463583
Merged-chr6-54925974-2	chr6	54925474	54926474	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 11 of 11)	intron (NM_001171007, intron 11 of 11)	45687.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	2.42267691763875	2.46028680853504	2.71768409902226	2.42430685724568	2.3505354667597	2.84750877584506	0.10444411455642	0.901198102951182	1
Merged-chr4-53083237-2	chr4	53082737	53083737	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	intron (NM_013454, intron 15 of 49)	71357.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	4.33194000930931	4.26766342511484	4.44293603082489	4.40861508336474	4.30432024149639	4.42570480398974	0.0852543769192467	0.846971244929619	0.964139319360833
Merged-chr17-56251650-4	chr17	56251156	56252156	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5137.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	3.44256177047648	3.12426975220545	3.47563236009769	3.50064293930167	3.5167315452303	3.38040187695761	0.446551267791421	0.467957440388625	0.818205691164444
Merged-chr2-92185273-10	chr2	92184749	92185749	+	944.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109691)	promoter-TSS (NM_001109691)	-234.0	NM_001109691	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	7.35244865021231	7.11283832590631	7.24085155535842	7.43826782758011	7.32432984348508	7.5117566877985	0.272415043289851	0.248554618530285	0.645658488345029
Merged-chr6-34385158-2	chr6	34384658	34385658	+	836.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_149754, intron 1 of 9)	intron (NR_149754, intron 1 of 9)	911.0	NR_149754	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	5.52473935015313	5.83845017710104	5.49694668041212	5.44125499505371	5.4669503899796	5.34338078005153	-0.407059495051198	0.228752266312986	0.624004805277215
Merged-chr10-45020551-2	chr10	45020051	45021051	+	799.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46663.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	5.97494653967879	6.09062235057369	6.01066883606615	6.01028118562897	6.15448204809903	5.77209518456467	-0.0441001538661035	0.884205080507038	0.973466734537782
Merged-chr15-82906713-2	chr15	82906213	82907213	+	879.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045068)	TTS (NR_045068)	5421.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	3.45662047251392	3.04835553514706	3.12467058112971	3.18888703875029	3.17543595655272	3.52317039509932	0.304648913073535	0.65048093435703	0.902613484298836
Merged-chr17-56585338-4	chr17	56584820	56585820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	338.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	7.99698787523766	8.03860626585569	7.67355842369678	7.75075993446174	7.71559793968403	7.73916409636044	-0.266368081601263	0.243324829386268	0.640502592040103
Merged-chr5-134509854-2	chr5	134509354	134510354	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009990, intron 8 of 16)	intron (NM_009990, intron 8 of 16)	42580.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	2.99690853826062	3.28275819300118	3.21713938653019	2.92166654323808	3.14001948783305	2.93179259789989	-0.721015923015549	0.297999276450041	0.694758301901232
Merged-chr9-67841057-1	chr9	67840557	67841557	+	695.333313	f1_balb.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	661.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	6.56636775711585	7.17084276499523	6.70224598190162	6.63787687071588	6.55066384532734	6.40526268486701	-0.48664701981463	0.102319114480421	0.426562897824884
Merged-chr18-69680828-3	chr18	69680329	69681329	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 17 of 19)	intron (NM_001361128, intron 17 of 19)	-244730.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	3.62814806653103	3.37088000572533	3.4108804776391	3.37657729660633	3.20101475541572	3.36957564389378	-0.636253005189266	0.295620098122693	0.692574399499983
Merged-chr15-99365134-3	chr15	99364633	99365633	+	902.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	5349.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	3.48845921396661	3.48065432252408	3.78233175984023	3.40922611236604	3.53745107446446	3.60377487528988	-0.23437086705745	0.685507119352233	0.916283576052925
Merged-chr15-27927732-2	chr15	27927232	27928232	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98116.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.86882980880421	3.68099017541189	3.94030894041577	3.60045786459222	3.45837910270089	3.66407319266564	-0.887098544981881	0.109510222952864	0.442189178744938
Merged-chr14-104523670-4	chr14	104523179	104524179	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	4.06822846180678	4.05875975937666	4.25736141031285	4.18459907413637	4.24067449292701	4.09548641563374	0.158029906924451	0.738142649157323	0.933936098033613
Merged-chr4-11016721-4	chr4	11016238	11017238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9119.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.91837028600163	4.1610420638992	3.98359901040809	3.88840522564963	3.9720740538796	3.79545393145868	-0.40745432137906	0.424582797807578	0.792697196836987
Merged-chr11-54630323-5	chr11	54629805	54630805	+	922.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 11 of 28)	(TG)n|Simple_repeat|Simple_repeat	34159.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.30008826221242	6.29996527235822	6.06353470261801	6.27241314557315	6.00741557983706	6.37126285611299	-0.0300115504227158	0.918999820984076	0.98189651897125
Merged-chr11-3168544-2	chr11	3168033	3169033	+	970.75	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	(TG)n|Simple_repeat|Simple_repeat	24930.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.02569743593362	6.13070599181219	6.2118215658169	4.38538608934789	4.12486018612902	6.80277806858011	-0.531761501038178	1	1
Merged-chr19-6997793-2	chr19	6997293	6998293	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027351, intron 2 of 5)	intron (NR_027351, intron 2 of 5)	1662.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	3.2913048187615	3.20757469974406	3.65147377146594	3.49256301964365	3.43532549759825	3.90551885405897	0.837426781307738	0.183999742580353	0.567592888730853
Merged-chr4-97885740-3	chr4	97885246	97886246	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	108120.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	2.96724815176697	3.03787882750646	2.97012814441647	2.62835807109492	2.59917666389397	2.86384098558431	-1.60150777565849	0.0339419747608649	0.225415004890167
Merged-chr18-80371378-3	chr18	80370881	80371881	+	889.377808	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7127.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	2.88137598164762	2.59090233634679	2.7580315389063	2.6743605869661	2.27422310548481	2.77093459366521	-0.848157327026349	0.344284999715301	0.732980075743821
Merged-chr7-75774727-4	chr7	75774225	75775225	+	893.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-73613.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.26503614020913	4.18295576037587	4.53508991175125	4.4670222136252	4.23129797903309	4.26317954136395	-0.00549997638552861	0.990537285224413	0.997892660866058
Merged-chr2-153174493-4	chr2	153174014	153175014	+	954.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	13213.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	4.13623587555864	3.826090745871	3.78416297021783	3.94623042846416	3.62743537843639	4.00555770018859	-0.208756386013721	0.702097557942629	0.921757269771603
Merged-chr5-100566537-1	chr5	100566037	100567037	+	663.0	f1_balb.idr	intron (NM_139198, intron 1 of 4)	ID_B1|SINE|B4	5668.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.87086342691917	4.8223983789488	4.87242613941256	5.24947116945071	5.33478330015648	4.77760862519461	0.647662337597599	0.102587877445985	0.427175688217691
Merged-chr8-39650695-2	chr8	39650199	39651199	+	581.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8021.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.77547999813805	5.90724788179055	5.96464315901045	5.34528413356244	5.46394436444834	5.58048421877195	-0.774336945858754	0.0152223900554428	0.134048537594802
Merged-chr7-140941870-4	chr7	140941359	140942359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 1 of 11)	intron (NR_153832, intron 1 of 11)	468.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	8.55821109880003	8.3563224390999	8.17444885268669	8.40371242834156	8.30757986711477	8.15467802455126	-0.115151051393853	0.609238654478949	0.885062773702803
Merged-chr13-52638265-2	chr13	52637765	52638765	+	989.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 10 of 13)	intron (NM_011518, intron 10 of 13)	41383.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.20369295887672	2.99739791209315	3.30251733158253	3.24699566157955	2.60409040975035	3.3201963515554	-0.222313585203694	0.876724224733971	0.971370432413299
Merged-chr19-10869747-4	chr19	10869200	10870200	+	990.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133804)	promoter-TSS (NM_133804)	79.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	3.29205954665866	3.17955036859952	3.17538170721474	2.9788895316952	2.88009090108567	3.0718927287681	-1.12262902488033	0.0929308103884833	0.406192421536049
Merged-chr1-38902794-3	chr1	38902292	38903292	+	782.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4632.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	2.45219890483802	2.49927167768195	2.53012690607937	2.25380138518752	2.14280420448044	2.47918655902751	-1.3568831335977	0.125283697900865	1
Merged-chr11-117199715-4	chr11	117199212	117200212	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	51.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	7.31946148035466	7.42859251946083	7.1278167129993	7.64432562052839	7.64100695253766	6.77826914139255	0.182924619594311	0.557115229640539	0.864055599824012
Merged-chr10-93688470-4	chr10	93687990	93688990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5168.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	6.62269268501463	7.09905591051309	6.30076693882891	5.89087070943072	6.16462228768569	6.16902391874316	-1.05340521062926	0.00139021835554587	0.0233267370292923
Merged-chr12-85534456-6	chr12	85533955	85534955	+	822.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60565.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.73297168966525	5.91616954854717	5.98630521132582	5.29836255735204	5.33313265196632	5.7727754856996	-0.752615516048485	0.027287133043023	0.196814431090816
Merged-chr17-34849765-2	chr17	34849269	34850269	+	776.5	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	435.0	NM_021337	108077.0	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	4.86637728564993	4.99568009034286	5.32421352674668	5.20371594927758	5.51309860383881	5.58028298399211	0.761969718359015	0.0430105090067866	0.260126358005284
Merged-chr17-37045603-3	chr17	37045106	37046106	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019439)	promoter-TSS (NM_019439)	-360.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	5.9838510748603	5.6900164861445	5.92196527880015	6.14750130509174	6.07333831771171	5.34280884823933	0.0801410981504579	0.827351466550038	0.959445425237295
Merged-chr5-73490901-4	chr5	73490408	73491408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190733)	promoter-TSS (NM_001190733)	-118.0	NM_001190733	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	5.09839430733264	4.84250528330165	4.66959599879403	5.05004417761902	5.25806228222569	5.05191441204385	0.505680898097437	0.199045510522639	0.587457129059262
Merged-chr10-41302778-1	chr10	41302278	41303278	+	1000.0	f0_c57.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	463.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	6.46039514221321	6.94837128280042	6.69410226845845	6.27145180034092	6.63592322276819	6.89836248912283	-0.152455747995887	0.622684578343336	0.891241737245933
Merged-chr11-69043020-2	chr11	69042520	69043520	+	739.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2617.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	4.55566825136812	4.38896391716139	4.2890459978923	4.42863104079876	4.92226262996016	4.66469610495291	0.66690363121785	0.139188583871571	0.498433623979414
Merged-chr1-171268421-3	chr1	171267934	171268934	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1894.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	3.26623844131182	3.26321169484537	3.34955999815939	4.42476357693578	4.41695788937218	4.28878835665083	4.17279687240422	2.34666412530365e-09	2.42560532345672e-07
Merged-chr17-5293883-4	chr17	5293386	5294386	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	124881.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	2.88994217914536	2.90070349204422	2.77168659409287	2.99693770522936	2.81589946360196	3.02958281030304	0.424710683471412	0.545898796330476	0.858417217141949
Merged-chr1-173414046-1	chr1	173413546	173414546	+	600.0	f1_c57bl6.idr	Intergenic	Intergenic	-6558.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.27729672704071	3.34362271422911	3.52119370924982	3.46954097497712	3.69882645545798	3.48355625135145	0.680522527903188	0.250323672856003	0.647642028882978
Merged-chr15-81564078-3	chr15	81563567	81564567	+	893.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22147.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	5.24212193178065	5.3698193062468	5.51105035249573	5.89106857077773	5.94119569764798	6.02113050164413	1.07095002620926	0.000747359098773256	0.0143949666413715
Merged-chr1-64108839-2	chr1	64108339	64109339	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	12550.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	2.57109638200277	2.73750805462595	2.83886546082209	2.59917424447111	2.51909500282339	2.47425020691257	-1.05486749038021	0.181234304597592	1
Merged-chr11-46120332-4	chr11	46119848	46120848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291891, intron 8 of 22)	intron (NM_001291891, intron 8 of 22)	-7556.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.8836553069893	3.67154644963934	3.48324324928522	3.97475776156447	4.07229986363783	3.67748251397419	0.725774598024043	0.2052735377144	0.595945728555871
Merged-chr1-183917164-4	chr1	183916673	183917673	+	845.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116825.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	4.15928314672123	4.21056976163641	4.12816953775684	4.4784321316578	4.36082356662912	4.46751160508012	0.704664470871857	0.117442564896474	0.457561911483886
Merged-chr6-137471158-6	chr6	137470625	137471625	+	840.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48770.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.89338675200473	3.68109847564337	3.92236526398372	3.70268218791321	3.43018663166153	3.79782835086815	-0.633689613155448	0.25832426268229	0.655824416453637
Merged-chr10-105957631-4	chr10	105957146	105958146	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116167.0	NM_025602	52713.0	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	2.59667744901644	2.82106603872369	2.73984118592105	2.3508342038593	2.4186421744698	2.49953459450198	-1.87426672394849	0.0254611623676247	1
Merged-chr2-18687951-4	chr2	18687459	18688459	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10941.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	2.35641853994072	2.43052345307614	2.49205922115044	2.53871682726434	2.52356748929683	2.62853656152201	0.835062006301848	0.290991232886754	1
Merged-chr8-46851224-2	chr8	46850724	46851724	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111479.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.57103954054418	6.8636946790395	6.8219181180048	6.98298446234858	7.1692481212468	7.25267065596149	0.583888504502618	0.023419798146693	0.179307560194151
Merged-chr11-105577481-2	chr11	105576981	105577981	+	624.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12505.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	3.21515191913093	2.9817797184704	3.61561126533363	3.64385981179288	3.3017400786656	3.917608120668	1.27267502364111	0.0676772208562306	0.340320674019776
Merged-chr7-45920703-4	chr7	45920235	45921235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001146346, exon 1 of 5)	5' UTR (NM_001146346, exon 1 of 5)	114.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	6.05781308009411	5.98828727649991	6.313225666411	6.24086106068272	6.05294964512537	6.94087001051701	0.56205289187676	0.113086244747639	0.449256636570139
Merged-chr3-109062610-4	chr3	109062107	109063107	+	982.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17892.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	3.51669176724474	2.97456334150469	2.87857773262183	3.27398737693697	3.13845693455759	3.43928106864842	0.516196274834604	0.491295900650434	0.830448151501811
Merged-chr19-5646609-1	chr19	5646109	5647109	+	785.0	f1_c57bl6.idr	intron (NM_009045, intron 10 of 10)	intron (NM_009045, intron 10 of 10)	9119.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	2.53589101067853	2.39146515796053	2.70291123122849	2.24006368920501	2.17785705468359	2.65848854158918	-1.07156819295127	0.240080247646508	1
Merged-chr18-70474747-2	chr18	70474181	70475181	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289650, intron 3 of 8)	MIRc|SINE|MIR	2015.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.07932492397202	3.16568216615962	3.12584388311455	3.62071882504148	3.54362648655756	3.49339021712867	1.74903009780214	0.00519592424429358	0.0627948387101206
Merged-chr10-81185113-4	chr10	81184612	81185612	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	1194.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	2.85954236121711	2.81793094333184	3.05276411189174	3.14697776312323	2.84982931404521	2.94821679688924	0.374001719154376	0.593914393783859	0.87869043718937
Merged-chr13-58486803-2	chr13	58486303	58487303	+	986.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83460.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.18727549803993	6.06715147191969	6.30895315438719	6.37652153532918	6.42340983560292	6.44300547654849	0.381429772202577	0.164878952627789	0.539575548267644
Merged-chr7-135603110-2	chr7	135602610	135603610	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-2718.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	3.941645439377	3.57332758923358	3.63304373560217	3.44662343472917	3.30289234785123	3.36517216727195	-1.31649486485797	0.02775955939737	0.198830801268517
Merged-chr5-100557215-4	chr5	100556720	100557720	+	952.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14985.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.17458007793539	4.32965024781198	4.61184778061657	6.14842455246467	6.41185026327828	6.07145533530706	4.0182730686999	6.0952237501605e-22	5.76331111140176e-19
Merged-chr9-83557468-4	chr9	83556921	83557921	+	811.37915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	9083.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.72463583431585	3.92226966102166	3.89321205707454	4.20206789514448	4.28934793472026	4.20501959666601	1.14139131902783	0.0206429130744136	0.164794733867006
Merged-chr7-27161203-2	chr7	27160703	27161703	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357767, intron 1 of 4)	intron (NM_001357767, intron 1 of 4)	4525.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	3.41673307488276	3.24003800392215	3.72744867105548	3.16083918089737	3.20207283254349	3.70253563482702	-0.36867737115949	0.579873887420019	0.872644657556124
Merged-chr16-8470768-4	chr16	8470275	8471275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-38.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	6.18413611823272	6.28461038368593	6.29287779752625	6.14355098453278	5.97282093594884	5.66498521036954	-0.512570683072852	0.0929058460012138	0.406161322871923
Merged-chr13-51398881-4	chr13	51398358	51399358	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-9760.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	6.47488694483687	6.68334463205136	6.40511331413278	6.37183658948659	6.41362838913224	6.286916391268	-0.276392529636232	0.310872190813331	0.706132705099247
Merged-chr11-32267658-4	chr11	32267163	32268163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	44.0	NM_181569	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	6.56731367814353	6.49220082747455	6.20235076269202	6.29385339708113	6.23132360022628	6.22011244654052	-0.314592248725716	0.263462996326404	0.661383847170923
Merged-chr8-36821223-1	chr8	36820723	36821723	+	591.0	f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-88169.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.18517292276517	3.77548474999646	3.41050048265806	3.1869877285872	2.89307046023034	3.06646916847895	-1.83253551549195	0.00976555160553611	0.0989011706418511
Merged-chr12-24498659-4	chr12	24498096	24499096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028341)	promoter-TSS (NR_028341)	15.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	6.40077227018713	6.61344795306275	6.95737613681509	6.41528100280178	6.29707027323657	6.6336784976558	-0.353505004516515	0.2346360958212	0.630760120158631
Merged-chr19-55703683-3	chr19	55703184	55704184	+	804.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.37929390798651	3.99074876140168	4.28553689281635	3.92449750804098	3.70025627520724	3.77484632034598	-1.28503260839114	0.0140860013298266	0.127357165995025
Merged-chr13-81148023-4	chr13	81147548	81148548	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	183974.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.77045079931242	2.87288754948549	2.89888129290504	2.81378053804934	2.83641709507358	2.78831460031946	-0.164130007729789	0.816067014812928	0.956613614084416
Merged-chr10-80680263-4	chr10	80679739	80680739	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3946.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	7.18414872009544	7.26525832716934	7.09929380904626	7.25366970573443	7.46837924829895	6.96534324550139	0.104441540610204	0.686447387896498	0.916761528494478
Merged-chr11-32559042-4	chr11	32558542	32559542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	25776.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.73452081081069	7.79669007296858	7.61456207140095	7.63930271064188	7.90265862446379	7.65234482068048	0.0318455033051671	0.889168235929744	0.974207858658472
Merged-chr10-75590046-5	chr10	75589591	75590591	+	922.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	710.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	4.48586423175876	4.54973351024385	4.96891348913054	4.72979623315676	4.59119454962061	4.46610426717256	-0.166801704247533	0.704746512195763	0.922514359670029
Merged-chr10-78356154-4	chr10	78355669	78356669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4469.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	3.59330524015338	3.05825335501734	3.40288211715984	3.35647556555893	3.35168234417363	3.11933570913624	-0.34367142171303	0.609226850580144	0.885062773702803
Merged-chr1-162574301-4	chr1	162573781	162574781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	3453.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	7.52332684161445	7.47944499211031	7.48679395313735	7.1079373269266	7.27894473134648	6.98719935631416	-0.529758096983747	0.0253354701349094	0.188544298272565
Merged-chr10-8739042-1	chr10	8738542	8739542	+	586.0	f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	intron (NM_175155, intron 16 of 19)	147028.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.3918800499971	2.44693437412385	2.82286537569297	2.72345985822652	2.56968263457489	3.00821351222827	1.15258707817278	0.165920194098847	0.541089092560861
Merged-chr18-82692333-4	chr18	82691859	82692859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177832, intron 1 of 29)	CpG	375.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	7.41193288718102	7.36544293184779	7.18915432624783	7.47622077321705	7.28132655510997	7.18439922165408	-0.0121462976760483	0.959742093507337	0.990242512723989
Merged-chr8-25042149-2	chr8	25041696	25042696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-3234.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	3.51628163487819	3.46051751155671	3.58599681466062	3.7659342897281	4.21982843092342	4.10758148651833	1.75153421732225	0.0017224875763333	0.0275571517499599
Merged-chr9-109058413-8	chr9	109057987	109058987	+	974.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026381)	TTS (NM_026381)	764.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	6.88014372550191	6.86778605659769	7.10488614705046	7.09853682055047	7.38318707151355	7.36781645383804	0.515942673818484	0.0388553803523452	0.244393263916996
Merged-chr10-96328102-2	chr10	96327602	96328602	+	683.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER2|LTR|ERV1	101895.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	2.73595585466362	2.91715159777274	2.72170988987048	3.12784819644679	3.04137337159768	2.98910361170525	1.24088153684515	0.0845857786424755	0.385127960015491
Merged-chr9-77936104-4	chr9	77935609	77936609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	18744.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.58699964387056	4.52606605907999	4.38266303837435	4.60727200972087	4.12666756832324	4.5778774700151	-0.148659465024381	0.748419338912891	0.93698133248868
Merged-chr3-54725326-2	chr3	54724826	54725826	+	600.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358017, intron 22 of 24)	B1_Mus1|SINE|Alu	10038.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	1.92055311463421	1.92688462478212	2.12220041148491	1.96065191424821	1.79609214581246	1.86099729416457	-0.98725103561154	0.315469239579277	1
Merged-chr4-133756868-4	chr4	133756360	133757360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3249.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.12536993801018	7.41627210219088	7.24442283787968	7.11714547284395	7.25393196960128	7.29034787360118	-0.0722334737966732	0.765323094732215	0.942137701159565
Merged-chr13-5865465-4	chr13	5864946	5865946	+	935.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	3957.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.63256084575949	6.53671192694658	6.14587025994546	6.37091838122342	6.54414117661162	6.20704685960617	-0.122823332520279	0.680872610500712	0.914504446345046
Merged-chr15-75085628-4	chr15	75085128	75086128	+	991.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	26309.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	6.19183556482222	7.34354384478576	7.15294119694735	6.69585165309476	6.92949992299672	7.76527869012037	0.346886465349625	0.615806609619484	0.88811014762473
Merged-chr3-10430096-4	chr3	10429584	10430584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 4 of 6)	intron (NM_001127191, intron 4 of 6)	10046.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	3.43152035958403	3.60011963022058	3.29862010308652	3.15388432440846	3.31459084869783	3.12748254739242	-0.984103286486609	0.125256591191699	0.47357099417843
Merged-chr13-56176003-3	chr13	56175444	56176444	+	696.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	2941.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	4.90635968368805	5.16920462023726	5.3922364887604	5.10757735534427	4.56535203424318	5.22330426809382	-0.375496068833181	0.382379079862319	0.763956450562662
Merged-chr3-37837520-3	chr3	37837027	37838027	+	709.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61286.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	4.13999884799018	4.20117196302425	4.26237481861654	4.21910736423979	3.73931264313042	4.37147584508526	-0.202268342604489	0.697884357147372	0.920122930091722
Merged-chr11-115633052-4	chr11	115632495	115633495	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4700.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.95197525973619	6.42053612549708	6.73223578124615	6.99965523446822	7.1150339504388	6.75927049137832	0.391328826152899	0.171224737491157	0.549224104532435
Merged-chr8-13160882-4	chr8	13160375	13161375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	1714.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	7.25187873070187	7.1374725323011	6.77437319991994	7.41946762835304	7.64763371311739	6.94456182408333	0.450066331142108	0.129358879914856	0.481107632717825
Merged-chr13-29984937-4	chr13	29984446	29985446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-555.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	7.22387493011257	7.40787066870834	7.31349341208109	7.54579615514808	7.55879046698565	7.39295507177999	0.276095268894202	0.229733365569734	0.625429506286429
Merged-chr13-21549698-4	chr13	21549215	21550215	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	6305.0	NM_207572	404335.0	Mm.377341	NM_207572	ENSMUSG00000054890	Olfr1535	MOR256-36|MOR256-63|Olfr1365	olfactory receptor 1535	protein-coding	3.03152263370395	3.04852698549768	2.99564312229231	3.43054869609072	3.23045826084481	3.30934099495437	1.28229294146409	0.0482407188645773	0.278450160304365
Merged-chr9-44327866-2	chr9	44327366	44328366	+	859.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007875, intron 2 of 8)	ID4|SINE|ID	1021.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	3.19148062660009	3.27582531821406	3.36208979255567	3.27722871746226	3.02309500764777	3.43251253275254	-0.115987995470895	0.857013962640281	0.966670562326887
Merged-chr18-57578528-4	chr18	57578009	57579009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-26112.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	4.40032411622356	4.59730643398228	4.78054646113911	4.60401972853702	4.74202670774806	4.44265342190223	0.043169197665311	0.920846962768729	0.982463724790289
Merged-chr2-180920096-4	chr2	180919563	180920563	+	858.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173761, intron 2 of 4)	intron (NM_173761, intron 2 of 4)	873.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	6.84401237980118	7.35187204904923	6.77097004134277	6.86230979666173	7.08069185060555	6.92084328817974	-0.098903480286177	0.729268054333208	0.930601789377265
Merged-chr16-95659709-4	chr16	95659213	95660213	+	945.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42694.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.16859263428086	4.4411056946721	4.5171459162846	4.41463307922536	4.01479266374181	3.88079409961726	-0.683064983969733	0.181918296077478	0.564599719973151
Merged-chr12-85467683-2	chr12	85467183	85468183	+	706.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6207.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.61633485746013	4.35588575497461	4.35434570117481	4.36459120421329	4.08697182786644	3.97942081731152	-0.785324371135319	0.102475181421592	0.426970738685715
Merged-chr12-28750437-4	chr12	28749937	28750937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	16.0	NM_001161411	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	7.53033602133848	8.09249700142752	7.59969554754391	8.00272695370733	8.17494517929231	7.54459714633783	0.241889682115673	0.400214721350382	0.776393419148619
Merged-chr6-134171376-2	chr6	134170876	134171876	+	880.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	ORR1D2|LTR|ERVL-MaLR	135676.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.41366539278146	5.12967462718914	5.42797910216059	5.59627121096181	5.29399526037125	5.13788359825809	0.0727072753754537	0.843026278868559	0.96326014957149
Merged-chr15-63965562-4	chr15	63965070	63966070	+	895.020874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360038, intron 2 of 11)	intron (NM_001360038, intron 2 of 11)	32496.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.36342381112875	4.27695315620392	4.30245331640495	4.2780038380624	4.24429414104796	4.61453966364178	0.165671799425296	0.717174786517174	0.926979087819795
Merged-chr1-192137154-3	chr1	192136644	192137644	+	949.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033536, intron 1 of 3)	CpG	246.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	5.61341948377291	5.66312553298017	5.8776883804461	5.30246493179706	5.41495021731256	5.62046354024511	-0.508619172351759	0.126521732734979	0.475480797498401
Merged-chr12-111445280-2	chr12	111444780	111445780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009396, exon 2 of 12)	exon (NM_009396, exon 2 of 12)	2619.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.04549014872253	5.90006190723192	6.11132082543673	5.99477242688891	6.1103330942883	6.04078122930165	0.0623097499826169	0.830294134764176	0.96024589325867
Merged-chr17-66219936-4	chr17	66219486	66220486	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96466.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	5.627359519762	6.0306625451951	5.71083157899233	6.03696980192955	5.93475446976156	5.33917040557735	0.0185345371824684	0.95955676258422	0.990233913483689
Merged-chr15-78448395-4	chr15	78447886	78448886	+	800.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19822.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	5.80671559090293	5.89167152542204	5.9362793740709	5.62725366928802	5.70271354620418	5.80654034545992	-0.299620472444271	0.325875125496062	0.718336010416482
Merged-chr3-32398608-4	chr3	32398103	32399103	+	957.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32938.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	6.12232861471748	5.80854765298235	5.95105317949845	6.14098412397187	6.05295219616939	6.05830546766887	0.201454161512082	0.498151558806418	0.833856267944725
Merged-chr17-26124803-2	chr17	26124303	26125303	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024227, intron 2 of 4)	intron (NM_024227, intron 2 of 4)	1300.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	2.68671872256386	2.72043432934701	2.73888309138348	2.96943345840267	2.95607467835789	3.11228157684812	1.51355005583394	0.0354144305623018	0.231015610591791
Merged-chr5-148512437-2	chr5	148511937	148512937	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	B4A|SINE|B4	39236.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.8310533259638	3.95476272588962	3.96265044141434	3.78648226597429	3.67732252392302	3.93574701006396	-0.382121926068233	0.462246694572784	0.815159087955196
Merged-chr2-90545466-4	chr2	90544961	90545961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35186.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.88845302627932	6.28839898611238	5.96631413220169	6.78940030494754	6.7195046320271	6.75048315168305	0.472936164245402	0.161524538940729	0.534483967079464
Merged-chr2-102827974-4	chr2	102827465	102828465	+	925.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 11 of 13)	MTC|LTR|ERVL-MaLR	73700.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.7675573386822	3.98690177259049	4.24203400521461	3.66920133623326	3.48139591146672	4.46018468044225	-0.191095265341451	0.764118990642362	0.941958626520407
Merged-chr6-26297568-4	chr6	26297067	26298067	+	836.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	366141.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	3.11839605715707	3.06963228647484	3.4029986371497	3.17940492215758	3.18188356262605	3.89541222972586	0.980000800630059	0.159083276823594	0.531106366670038
Merged-chr9-7254865-3	chr9	7254334	7255334	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-17680.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	2.9506265579999	3.33806728358979	3.32368627082009	3.19942856749032	3.12042382066815	3.34020813447524	0.0160667179054945	0.980674940746384	0.995560772285461
Merged-chr4-152176819-4	chr4	152176331	152177331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1269.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	4.62989933110168	4.5000377868876	4.85170654561153	4.86905043814529	5.03425925963935	4.36775727848004	0.319315209499777	0.482050614512268	0.825301280474409
Merged-chr7-102099814-2	chr7	102099314	102100314	+	838.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007491, intron 1 of 4)	intron (NM_007491, intron 1 of 4)	415.0	NR_111935	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	3.78052848760247	3.98474142908292	3.50323529422747	3.79646372418075	4.04490773548488	3.80570846528032	0.352749584114289	0.534590539257484	0.853068627162717
Merged-chr15-38299282-4	chr15	38298760	38299760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013692, intron 1 of 3)	CpG	640.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	7.48930972252056	7.09400955505283	7.02399989454749	7.24683758650291	7.14314816628397	6.86300284802499	-0.187791701741551	0.49212030360911	0.830932350298435
Merged-chr16-31938596-4	chr16	31938065	31939065	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	MT2B|LTR|ERVL	4714.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	7.0547330870701	6.93196394681031	6.81691037401336	6.96419849913227	7.15662635058266	7.13631235930545	0.221269979969677	0.370656440954795	0.754953050459714
Merged-chr11-9535048-4	chr11	9534582	9535582	+	998.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	343140.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	2.65142850288207	2.9748091849365	3.09389084324909	2.88846236350151	2.83077535990735	3.10975780871946	0.130192747915599	0.85994258657704	0.967441103100897
Merged-chr13-38037194-4	chr13	38036700	38037700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	211.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	7.14226399563858	7.21032362096317	7.01253236117818	7.56707114592605	7.70740955995531	6.93877662399214	0.489177937064404	0.0894375080474284	0.397347224604113
Merged-chr15-100048356-4	chr15	100047851	100048851	+	943.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	9687.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.958976749857	4.89737321248477	5.18193923032706	6.10229640342208	5.79542343329756	5.53425385394104	1.61446990666119	7.8590683241859e-06	0.0003244355302772
Merged-chr7-126645860-3	chr7	126645360	126646360	+	793.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3449.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	4.14304002370271	4.14827597329177	3.95054714543898	4.36039902141537	4.10413840645793	4.47771144186597	0.616531320045373	0.204659512665109	0.595338437555822
Merged-chr13-94284585-2	chr13	94284085	94285085	+	825.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	696.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	6.33018523415115	6.23826873218701	6.05098598946988	6.11003091582404	5.81892676965201	5.70308413313658	-0.557709985686385	0.0707863799931413	0.348868437257914
Merged-chr2-132027616-4	chr2	132027141	132028141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	2347.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	4.2735891312956	4.57394540721769	4.81790910921305	4.04671079612916	4.0047868714276	4.56347288501404	-0.902435896376568	0.0756136102932868	0.362068765636024
Merged-chr18-40220417-2	chr18	40219917	40220917	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	2.53697556383553	2.50189782144677	2.89813508209739	2.64823206503983	2.62859593631587	2.54690976078374	-0.231085772469313	0.770037624369761	1
Merged-chr8-26154101-4	chr8	26153637	26154637	+	599.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4032.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	3.66102218688671	3.7822749757369	4.03229784542334	3.9810407315173	4.03296011051505	3.85840896535256	0.432555001531423	0.408905753728263	0.782403749794615
Merged-chr16-85139472-4	chr16	85138978	85139978	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34229.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.09369228709555	5.03130853117022	5.41286857873414	5.15095036993627	5.0410280956397	4.88780171475597	-0.298035075366422	0.433084935439506	0.797623786395605
Merged-chr7-43344671-2	chr7	43344203	43345203	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	2.49526428928066	2.35301122127906	2.62518733802675	2.60601728262289	2.61357590044865	2.75911448257629	0.980893524908694	0.216079253793461	1
Merged-chr3-148959511-4	chr3	148959019	148960019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4884.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.84624739209787	6.97355457688603	6.63025298581512	6.59978345668434	6.6747665032414	5.6910457306687	-0.66364156820089	0.0683472414245933	0.34196167583702
Merged-chr14-25694074-4	chr14	25693562	25694562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	-108.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	4.70002235303085	4.48609100311647	4.60251632575861	4.6287645679571	4.45658692531884	4.41310364181636	-0.232799276410543	0.58501461868903	0.87477799647552
Merged-chr11-26586208-4	chr11	26585701	26586701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7719.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	7.28334901263433	7.55350302553257	7.27953750008585	7.25245797225731	7.3986587828391	7.08784920880099	-0.181612790770985	0.464574953341112	0.816459397744841
Merged-chr1-143954649-2	chr1	143954149	143955149	+	666.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	49500.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	2.66670843395109	2.68286264170661	2.75462759803978	2.62840662486853	2.57572297642901	2.64242760877209	-0.482697082174341	0.517306357459985	1
Merged-chr10-68715595-4	chr10	68715110	68716110	+	942.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8136.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.95590431401837	3.97154765597349	3.82164622885976	4.18011131778105	4.09164711945011	4.04560846362122	0.549256017021454	0.265070837167374	0.662839771217229
Merged-chr16-49839144-3	chr16	49838639	49839639	+	785.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16515.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	6.19795102580382	6.30447018378423	6.10627936239462	6.21995063357253	6.30725890070192	6.14484700015655	0.0339234112829043	0.903813066957093	0.977872706584114
Merged-chr15-6277936-4	chr15	6277448	6278448	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21841.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	3.99531781078296	4.21117179263829	3.917457456668	3.94045889634194	3.84686860428513	3.65960814084206	-0.692910631511928	0.188701630016548	0.574222837446979
Merged-chr16-49802065-2	chr16	49801565	49802565	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-53589.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.09404873129965	4.34403382037618	4.25326619984198	4.16716493082426	4.37368462086646	4.40763842691131	0.227199316421349	0.624235061609368	0.891935778467452
Merged-chr18-20897143-2	chr18	20896643	20897643	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	5.07903841676676	5.37928304270319	5.15098714076151	5.01637239213561	5.11046445596686	4.88924041384091	-0.410774233583475	0.272106646664279	0.669529543069504
Merged-chr17-31657572-2	chr17	31657072	31658072	+	973.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_024187, intron 1 of 7)	B3A|SINE|B2	1182.0	NM_024187	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	5.27035833112171	5.43263469520977	4.77709712599101	5.63757538882264	5.35664387510122	5.05449865132196	0.347412330797741	0.404435498094363	0.7795881215457
Merged-chr19-5809806-2	chr19	5809306	5810306	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-7134.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.83065073125095	7.63270660638291	7.55168800224779	7.60919075211664	7.66340125010586	7.25450441389882	-0.218107473905549	0.377182385369343	0.759616521190546
Merged-chr3-135690919-4	chr3	135690416	135691416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	CpG	631.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	7.77328257214161	7.94524771670271	7.62916483261303	7.85444153493669	7.65372228736196	7.92367572331417	0.0231900947100188	0.920592735684234	0.982463066268389
Merged-chr16-20403454-4	chr16	20402954	20403954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 5 of 6)	intron (NM_176839, intron 5 of 6)	22940.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	5.85368338499686	6.06693466822797	6.23217265314146	6.11732572015682	6.2022216980013	6.27248827464003	0.24735600369292	0.401509929566003	0.777579391314845
Merged-chr10-81542964-2	chr10	81542464	81543464	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	2082.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	3.63614130729184	3.80390786724767	4.34793398047794	3.54885782068507	3.57414512637459	4.00838451546178	-0.739380798391924	0.222252899892353	0.617181260654215
Merged-chr16-30976036-2	chr16	30975536	30976536	+	811.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	105396.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.89531437536734	6.13824511345079	6.27719324345102	5.61063038428423	5.6298764790538	6.03932718339883	-0.605903020101031	0.0633792407153635	0.327943527233628
Merged-chr1-125436509-2	chr1	125436009	125437009	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	-782.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.42222126115393	6.76050083740423	6.34035430920869	6.80491743462841	6.8035380203457	6.5355231427419	0.311377049526731	0.272367088633116	0.669663338532819
Merged-chr2-14224568-4	chr2	14224056	14225056	+	956.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-4858.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	3.41899788613396	2.86269324734159	3.04962374660874	3.04423743105961	2.68739427322262	3.00160843047012	-0.979186750063835	0.196838084252309	0.584754678471847
Merged-chr17-33718784-4	chr17	33718281	33719281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-104.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	5.97823090739123	6.0381043182124	6.23727749594761	6.13573120427212	6.27221923640669	6.15406173543905	0.19110281800425	0.506076923297865	0.838289047715586
Merged-chr3-104794672-4	chr3	104794162	104795162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291859)	TTS (NM_001291859)	5628.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	5.70945992182916	5.95918438879365	6.02935632539282	5.9327996798633	5.7783417491593	5.72979606592595	-0.147104603142771	0.637146910660711	0.897338937840938
Merged-chr3-30862088-4	chr3	30861582	30862582	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	6132.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.80336430071672	4.01004891395134	4.55132907836521	3.93055742453555	4.06557121576034	4.09173938384879	-0.342003891292597	0.529819526802061	0.85104965514461
Merged-chr9-108048153-2	chr9	108047653	108048653	+	924.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013785, exon 6 of 6)	3' UTR (NM_013785, exon 6 of 6)	-1111.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	3.95155420087619	3.90123617029987	4.24160984596561	3.80989232931607	4.03985849102125	4.09019577830855	-0.136829545691761	0.789148197792118	0.949113136590636
Merged-chr10-69252555-3	chr10	69252058	69253058	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39364.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	7.07351215005589	7.18068411356118	6.97849268624631	6.88993429406643	7.39883412778915	7.26293158874637	0.182916233220124	0.49031856240512	0.830042606694236
Merged-chr2-83744507-4	chr2	83743996	83744996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	20099.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.79228929648889	4.84849547791483	4.68824794249967	4.5357324903005	4.27054709068353	4.5937075542524	-0.774429320974085	0.0677951687133869	0.34075744629023
Merged-chr9-119977039-4	chr9	119976529	119977529	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153287, exon 2 of 5)	exon (NM_153287, exon 2 of 5)	5994.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	4.70178374152701	4.62686391261826	4.78515685313728	5.15121765376228	5.0537203673654	4.73122987664599	0.668641769329043	0.0939772931126285	0.408372442680278
Merged-chr19-3906352-2	chr19	3905852	3906852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 1 of 19)	intron (NM_001136091, intron 1 of 19)	631.0	NM_001167784	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	7.20927935243009	7.04086082475158	7.2151586306537	7.70679274794688	7.75799455370044	7.43157116875632	0.725151896412678	0.00241757720282073	0.0357593489532884
Merged-chr17-48230883-4	chr17	48230370	48231370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-1869.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	2.98665424978026	2.84976555381339	3.0461008865174	2.70408923800217	2.81863190387658	2.82237787275782	-0.887962385725799	0.214946037643569	0.608170317702451
Merged-chr1-64305709-4	chr1	64305177	64306177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184288.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.66367693487753	7.88637029057769	7.65513335544482	7.52348528909399	7.82187815829797	7.85684215676849	-0.00115190949361131	0.996113754178857	0.998961028701257
Merged-chr11-5791272-2	chr11	5790772	5791772	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	2789.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	3.64281607759709	3.16334565305701	3.57941878115257	3.35043839455935	3.39676925013997	3.69895309719696	0.0304947978205522	0.961622521497187	0.990648883228567
Merged-chr6-58595319-2	chr6	58594819	58595819	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355477, intron 1 of 15)	intron (NM_001355477, intron 1 of 15)	-1353.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	4.5436741432925	4.46705541181334	4.54288476833493	4.10278519737526	4.50076447828825	4.21283128297345	-0.567588096744476	0.221027904535535	0.61561513090473
Merged-chr11-120574764-2	chr11	120574264	120575264	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	6.39836446315626	6.41141193615939	6.40604175199634	6.26371689074224	6.4847979786082	6.1618825435752	-0.13540382043588	0.626947622274717	0.892988961867358
Merged-chr5-32996022-3	chr5	32995524	32996524	+	975.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22792.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	3.71324748676933	3.76033688996681	4.11182691318789	3.57332060036972	3.42586884905388	3.73167025831565	-1.01440442648917	0.0772364809570194	0.36642300629863
Merged-chr1-171370047-4	chr1	171369550	171370550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027893)	promoter-TSS (NM_027893)	-123.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	6.08662825015899	6.02199303480244	5.65740140292765	5.87923742156968	5.62265060912075	5.74724467610231	-0.353015809437351	0.274272303054989	0.671699134465491
Merged-chr9-110645363-4	chr9	110644877	110645877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8784.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	4.59266739547262	4.79045893253465	4.60603778581109	4.82044205624129	4.88377474017313	4.79391490651771	0.380144247397258	0.340990460619284	0.730649955228746
Merged-chr6-82824529-4	chr6	82824049	82825049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50095.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.09858920668395	5.91642412564048	6.01078682171886	6.07332561901371	6.25671996411688	5.95362895962994	0.173149611205901	0.559356357506488	0.864930874255367
Merged-chr16-35903174-4	chr16	35902691	35903691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31809.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	7.89131933169817	7.95717046390746	7.83301992730228	8.30834397999116	8.55270693199278	8.04008035832456	0.604452169296224	0.0103754541334374	0.103083079108663
Merged-chr1-171129492-4	chr1	171128988	171129988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025321, exon 6 of 6)	3' UTR (NM_025321, exon 6 of 6)	7827.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	6.98629015381673	6.54042275114	6.80040843120385	6.64276726453412	6.49654857474789	6.47934160128619	-0.389152931302881	0.160156094538646	0.53274966067993
Merged-chr18-23751740-3	chr18	23751250	23752250	+	952.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	555.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	6.47106533742468	6.73379086955882	6.23443044273684	6.10988578910242	6.18384784520202	6.14311954975332	-0.59372424376422	0.042844692874321	0.259538526840893
Merged-chr2-3333932-2	chr2	3333432	3334432	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	3.57070801857423	3.6576602418656	3.62151173484376	3.85489122376279	3.83506813070881	3.46292047025439	0.407478268429835	0.472221556135041	0.8205191831757
Merged-chr14-67007666-4	chr14	67007182	67008182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009761, intron 1 of 5)	intron (NM_009761, intron 1 of 5)	1195.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	6.26553030884653	6.77484150862718	6.93996729149031	6.30673078910168	6.73889360790344	6.79259684938885	-0.0885399906678553	0.782201744022402	0.946479459866999
Merged-chr12-3357012-4	chr12	3356496	3357496	+	990.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8136.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.27978521077238	6.0759883692401	6.36553298361151	6.89514460791699	7.2233820454263	6.62719909067884	1.13066332312027	0.000120643166734256	0.00332289858246406
Merged-chr2-150843034-2	chr2	150842534	150843534	+	673.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356550)	promoter-TSS (NM_001356550)	-464.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.6664790375532	5.69403934148687	5.71180031533005	5.49601644634421	5.819224905237	5.66784388574729	-0.0274823209462684	0.931621298007102	0.984929477721491
Merged-chr13-9878112-4	chr13	9877616	9878616	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-112795.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.1417605791353	6.20739639992521	6.43772727942202	6.61732561307624	6.64346589055288	6.53251287659252	0.559400242450757	0.0394049451662315	0.246526817849007
Merged-chr7-45456342-9	chr7	45455804	45456804	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030678, exon 16 of 16)	3' UTR (NM_030678, exon 16 of 16)	3582.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	5.14724460548571	4.7879000310025	5.32532966453216	5.00847448157165	4.9735341245399	5.30071873962323	-0.00499867729315852	0.989984655221775	0.997682377633571
Merged-chr10-128529073-5	chr10	128528584	128529584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3225.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	5.77226519895451	5.52465499528374	5.58102730067435	5.42748781680587	5.49089738154843	5.64330883010448	-0.21611227053682	0.509976987376977	0.840623252721494
Merged-chr12-118296401-4	chr12	118295895	118296895	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 3 of 5)	ID_B1|SINE|B4	5045.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	5.98587326947544	6.40653759984249	5.46952365614388	6.05026822991701	6.34746055542689	5.91790022729401	0.170544395301523	0.651018685353797	0.902735752871093
Merged-chr2-118111785-4	chr2	118111259	118112259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-117.0	NM_011580	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	4.53599850707826	4.57801859926674	4.29384640948651	4.38805485330176	4.31711881931495	4.73370442587072	-0.00495330479066477	0.991305712300446	0.998222399926149
Merged-chr9-107613402-1	chr9	107612902	107613902	+	642.333313	f1_c57bl6.idr	TTS (NM_008138)	TTS (NM_008138)	-4161.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	5.2294710916663	5.15062004619259	5.35541775708248	5.41323188075556	5.33260102616846	6.04297829318339	0.734197945967052	0.0566765418068211	0.306887596190666
Merged-chr9-119340008-4	chr9	119339516	119340516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010851)	promoter-TSS (NM_010851)	24.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	7.26913359302892	7.60977740459836	7.66770546113232	7.5916922450982	7.88321053444881	7.95677133283941	0.426761828756477	0.0887440804358169	0.395470085952413
Merged-chr13-60618308-1	chr13	60617808	60618808	+	549.0	f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	16097.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.75700747817597	4.01251117467461	4.29980404803604	3.70204189660068	3.58569160552508	4.11895310539823	-0.677823546320858	0.23604028764184	0.632359727255743
Merged-chr17-78682428-1	chr17	78681928	78682928	+	847.6666869999999	f0_balb.idr	intron (NM_011500, intron 6 of 17)	intron (NM_011500, intron 6 of 17)	54132.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	5.12374095310063	5.51517006635293	5.11743530758169	4.91516702679683	4.90182620046926	5.04283272153073	-0.680685636740714	0.0734578695097876	0.356127802046978
Merged-chr19-32758994-4	chr19	32758499	32759499	+	826.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1422.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.8297412645101	7.01535187131883	6.49192284992255	7.24870285522592	7.47889219746588	6.85051516053768	0.639197907351512	0.0326429184976024	0.219949142630861
Merged-chr6-115480894-4	chr6	115480387	115481387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	MIR|SINE|MIR	58821.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	7.11228308219923	7.08467003399929	7.06662679380254	6.94214330386541	7.15085787901942	6.9192485448031	-0.110484849556972	0.649451520484243	0.902160587683553
Merged-chr15-13370045-4	chr15	13369559	13370559	+	943.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196384.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.42127556992205	3.53311173132917	3.64383261783287	3.58616245943735	3.80996807246445	3.76444127944237	0.676470662423219	0.226222771299803	0.621140322788657
Merged-chr6-72158303-2	chr6	72157803	72158803	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-35106.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.07270407518758	3.7131067261825	4.02473925325268	3.98432969460896	3.68255470234683	4.18208429179107	0.0380958893495542	0.944329611624424	0.987678846649468
Merged-chr4-86669462-4	chr4	86668970	86669970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	589.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.99734166030296	8.1897941850661	7.86704785794634	8.13695940509877	8.46944518501857	7.93138359156189	0.250587105448016	0.315257114108732	0.709642964607719
Merged-chr11-54796555-2	chr11	54796055	54797055	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8852.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.87905127521787	4.84105525669592	4.48825477681377	4.31209244797188	4.43228757001334	4.42161863031726	-0.897926168313309	0.0391726618367133	0.245498143112845
Merged-chr11-37044428-2	chr11	37043928	37044928	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100187.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.39071432170791	4.61291805157869	4.33666152843752	4.5143891870815	4.59456207178051	4.77115048550043	0.409208784540062	0.346541740500023	0.734711689104559
Merged-chr16-11069501-2	chr16	11069001	11070001	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3203.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	4.79333579651863	4.49849268262777	4.44974003123665	4.58953884942261	4.52882635390546	4.56095188829562	-0.0919788239033119	0.829987524503202	0.960157751275679
Merged-chr12-76887008-4	chr12	76886498	76887498	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145927, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	49531.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	2.9990635514407	3.18593435954793	3.18035943531705	3.20991269844862	3.3280817234918	3.13451174352031	0.460350475312611	0.475455513154028	0.821964422075422
Merged-chr6-71193369-4	chr6	71192863	71193863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6516.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	5.25398315393711	5.15780787283619	5.32516058077206	5.40377715425401	5.06288338592388	5.29614552006089	0.0250264019602919	0.944373894734002	0.987700332248508
Merged-chr10-86704809-4	chr10	86704323	86705323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003939)	promoter-TSS (NM_001003939)	621.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	8.16931326777573	8.50751606740024	8.25470814566175	8.07867447650429	8.31859214906766	7.95113477109995	-0.265700619268637	0.258204253862606	0.655659776470938
Merged-chr12-16877133-8	chr12	16876614	16877614	+	911.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17864.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	8.15428485516826	8.13240865824325	7.96509740356651	7.87516904848698	8.15345762981329	8.07978245046301	-0.0666299762371958	0.762482880679838	0.941561416958418
Merged-chr18-62046513-4	chr18	62046008	62047008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	93433.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	7.66518413633028	7.41834840757243	7.41015943284929	7.46232214723823	7.89344597397043	7.51963523530985	0.205787394213522	0.416644716188186	0.787543501962751
Merged-chr5-63966102-1	chr5	63965602	63966602	+	585.0	f0_balb.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2795.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	3.88448520331713	3.8875792673742	3.98470439836082	3.85866999381578	4.05124962306541	4.47424746692474	0.663667440799025	0.205772636025574	0.596447652812717
Merged-chr4-41359560-4	chr4	41359069	41360069	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	B1F2|SINE|Alu	7606.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.10907677887549	6.22610805490333	6.24097685706329	5.74296899411313	6.2586681281671	6.02453071270264	-0.26475130508395	0.39531919102631	0.772679036125936
Merged-chr10-81390017-4	chr10	81389511	81390511	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3053.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	5.21405914383417	5.25299307100229	5.28391756357348	5.43919309442397	5.41672063339613	5.11157823546423	0.185388417207284	0.597716780010504	0.880455475375358
Merged-chr11-8625420-3	chr11	8624907	8625907	+	705.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	39128.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.27548824561174	3.55141040961943	3.61019522894437	3.28100415859483	2.9782561535823	3.58009768547201	-0.719674865258552	0.286940685952271	0.684300670260737
Merged-chr15-59203404-2	chr15	59202895	59203895	+	806.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103553.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.12577785007419	3.09867586431866	3.17024845260151	3.18536424323307	2.9584978435405	3.00446133553319	-0.348127455853632	0.597017365564425	0.88011264230803
Merged-chr7-92881041-2	chr7	92880541	92881541	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	ORR1F|LTR|ERVL-MaLR	5788.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	3.66931655838812	3.8514796692107	3.72303277362027	3.80516307892789	3.55170248125989	3.79303590584251	-0.122695058482954	0.821866059809843	0.958023303204974
Merged-chr16-94586483-4	chr16	94585953	94586953	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	15546.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.12367395596177	4.12661076369856	4.24219166747885	4.17030135396263	4.08144741279437	4.02948545504464	-0.183163071820065	0.698580569582589	0.920392761604545
Merged-chr16-44173646-4	chr16	44173124	44174124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	CpG	227.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	6.81875086895048	6.47470149821221	6.47966966820478	6.58777927271443	6.07505072899947	5.98410913165026	-0.578278467403286	0.0706402764448614	0.348409388095254
Merged-chr1-178187505-4	chr1	178187020	178188020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024282, exon 1 of 5)	5' UTR (NM_024282, exon 1 of 5)	103.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	6.7775763661239	6.83046226198837	6.53973281409816	6.81050903594567	6.89937171092436	6.4872925869212	0.0402922926774394	0.883547770756512	0.97338816689636
Merged-chr5-28003982-4	chr5	28003465	28004465	+	928.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-67447.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	4.60191946814262	5.01764111960668	4.88906672196586	4.668142514841	4.54622131042702	4.22607183688293	-0.815617911549114	0.070503957294433	0.348035908789462
Merged-chr4-122886525-4	chr4	122886028	122887028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-452.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	7.97941909760409	8.41846289386338	8.13618888955253	8.14542711876772	8.5651633183154	8.36261392016094	0.2496701054002	0.309136891799995	0.704802606494279
Merged-chr16-91836409-2	chr16	91835909	91836909	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	intron (NM_001110275, intron 16 of 28)	95221.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.07892708791214	4.70963047722521	5.11677059971113	5.11975602893801	4.87183796971768	5.36124456046162	0.310654452322732	0.44350165249964	0.80383358753004
Merged-chr8-40851141-3	chr8	40850633	40851633	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11234.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.92795587063968	3.09399485889935	3.129849860405	3.83294286724648	3.84339983737409	3.82652725037145	3.40523767740479	2.11695235770965e-06	0.000105037192474839
Merged-chr5-36464166-2	chr5	36463666	36464666	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126490, intron 1 of 1)	RMER5|LTR|ERV1	688.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	4.68678987304483	4.79163663408755	4.48938844050777	5.1708975802744	4.92295791567002	4.60508682990577	0.580487114932497	0.175804977641284	0.555810653124206
Merged-chr4-147928594-6	chr4	147928075	147929075	+	850.8214109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011122, intron 5 of 18)	intron (NM_011122, intron 5 of 18)	8201.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	5.03907245671808	4.98958665452291	5.55292110522815	5.73160738880028	5.43825777722629	5.71682436000261	0.83057699710746	0.0268210627714338	0.195029886488287
Merged-chr10-86827164-4	chr10	86826656	86827656	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175331, intron 12 of 13)	MIRb|SINE|MIR	48151.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	2.79230771204155	2.77800899250333	3.11471134866014	2.65529135487211	2.60331665483839	2.96570941800022	-0.782446891167593	0.305059026655161	0.701313794825734
Merged-chr3-107333658-4	chr3	107333172	107334172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-383.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	8.75916813634934	9.10187557584749	8.41752210665011	8.70147542678274	9.14253447854577	8.08846343540092	-0.0959419942053736	0.764943175002204	0.942102569612401
Merged-chr6-65142855-3	chr6	65142344	65143344	+	859.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1886.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	6.17035087377742	6.44542949667142	5.81583447430589	5.81294571950988	6.2925675065105	5.79679450612519	-0.302539521288689	0.38719315064594	0.767462350491678
Merged-chr1-173440933-1	chr1	173440433	173441433	+	662.0	f1_balb.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20329.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.31750267191046	3.51315868209717	3.29015909138148	3.31465830481618	3.30689921388445	3.11935780616009	-0.502805846367083	0.424419171537143	0.792697196836987
Merged-chr16-49839727-2	chr16	49839227	49840227	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15927.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.62817159630814	7.80276188790137	7.50167426047983	7.6751820484762	7.9314714351905	7.52758702332744	0.108827239454348	0.656046014618935	0.904520810952906
Merged-chr14-45080014-4	chr14	45079517	45080517	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	91906.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	3.67455104575033	3.53254731505843	3.69472422680165	3.58558795947113	3.50278141232143	3.76393723501879	-0.0654578755085742	0.906617747827467	0.978787664113116
Merged-chr18-21718406-1	chr18	21717906	21718906	+	801.0	f0_balb.idr	Intergenic	L1MB7|LINE|L1	-66038.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	2.75579825483325	2.76108877927822	3.02402177037359	2.40555377190994	2.37208387872924	2.56240743861254	-2.58800403709786	0.0032733755128698	0.0449679758419796
Merged-chr16-10975605-2	chr16	10975105	10976105	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	17516.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	7.08311980358893	7.10103143397025	7.08485966701399	7.04372639617702	7.28272858090673	6.98179186796944	0.0433110290165205	0.859646355859038	0.967422477970803
Merged-chr15-58020305-3	chr15	58019795	58020795	+	925.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13999.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	5.86046442327711	5.04083798358803	5.69227142555714	5.94738914706939	5.77327908159595	5.50062179562496	0.327780727956585	0.406911175060461	0.781142268902047
Merged-chr2-4557229-4	chr2	4556726	4557726	+	756.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-2528.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.95892940122246	4.95857401719792	5.23801192909625	5.5029167780749	5.05139210640715	5.50391192870225	0.63543016146073	0.0972900575253606	0.415876794186434
Merged-chr3-95624904-4	chr3	95624442	95625442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-38.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	7.75248520557303	7.79253379808376	7.61020023680934	7.7724905972282	7.92118844220528	7.57900952289893	0.0695476562129575	0.763027962388504	0.941682496514445
Merged-chr14-19807575-3	chr14	19807061	19808061	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 17 of 20)	MLT1F2|LTR|ERVL-MaLR	16262.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	3.42682010792211	3.62499619613243	3.93602762318836	3.70724520368393	3.49569089025854	3.95872400876116	0.182382202671209	0.758674260079507	0.940287421764314
Merged-chr13-94161888-1	chr13	94161388	94162388	+	749.0	f0_balb.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	104092.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.24894543506168	3.88072306018345	4.19985621023034	3.92461156059632	3.79581047523198	3.99381116063792	-0.654072271517083	0.202676256027706	0.59252027125208
Merged-chr4-137387644-2	chr4	137387144	137388144	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22147.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	6.98560756911475	7.07702324138073	7.12796101837301	7.20570091465467	7.37479963800223	7.10970227266606	0.270973235485489	0.261110447962271	0.658639783250402
Merged-chr13-60668911-2	chr13	60668481	60669481	+	616.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	66770.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.38776215382136	5.14094039556622	5.50882037981676	5.07859225076644	4.81830916099001	5.71851465425534	-0.196136722199229	0.647493716288952	0.901467569151362
Merged-chr15-99651706-4	chr15	99651205	99652205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-49.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	4.06754567276023	3.99141072942229	3.83633281004392	4.27668906676445	4.3850034756721	4.11742562034477	0.839133455377357	0.0870163450578345	0.390974460800923
Merged-chr9-32671936-2	chr9	32671436	32672436	+	620.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24106.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.85157423762769	5.64678140456911	5.94949317665743	5.68725653406415	5.64106077159193	5.61013507957908	-0.303995224626794	0.335586091188648	0.72571789577215
Merged-chr8-71382796-4	chr8	71382298	71383298	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-846.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	6.1950089511308	6.24843905844724	6.25822544650786	6.02471693048624	6.11882301577018	5.99438665666495	-0.306259117797379	0.276064841317095	0.673393624422867
Merged-chr2-30829603-4	chr2	30829111	30830111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1311.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	3.32952220016102	3.32073148975506	3.1528082225742	3.29820640845457	3.17695266810496	3.45230492906394	0.130724111021321	0.834590611724422	0.96134412586854
Merged-chr9-104061975-2	chr9	104061475	104062475	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1146.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	3.84875989048864	3.75297659074171	3.62279629636403	3.90819705809196	3.62512205858252	3.69456523142436	-0.00921503181182201	0.986544593386865	0.997063455776714
Merged-chr5-23410306-4	chr5	23409730	23410730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24123.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.9173960950489	4.01290416378422	4.39313814624736	3.99411022662402	3.979598654184	4.38057173220161	0.0238878834009046	0.963407964668396	0.991116725160803
Merged-chr13-51733207-2	chr13	51732707	51733707	+	848.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_013660, intron 2 of 15)	B1_Mus1|SINE|Alu	60540.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	4.01942275986606	3.7518135101148	3.87731268922346	3.66639813532174	3.43290673258456	3.69247811842715	-0.987807605242164	0.0754097326651717	0.36159125428477
Merged-chr1-91093682-2	chr1	91093182	91094182	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	C-rich|Low_complexity|Low_complexity	40238.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.62755187973867	5.00609871030894	4.96140306442267	4.90133560804766	4.86251222942874	4.99112794779705	0.0917336450997061	0.817231357111476	0.956754861188725
Merged-chr16-96208588-4	chr16	96208092	96209092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015825, intron 2 of 7)	intron (NM_015825, intron 2 of 7)	8122.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	2.82774222263864	2.84296910508411	3.04088961134131	2.79335220950561	2.73116287315136	2.94080352193389	-0.415727074109165	0.558925042963595	0.86489961641779
Merged-chr11-79878825-4	chr11	79878300	79879300	+	920.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	83587.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.55044358324178	6.86672293162752	6.71206805825164	6.24710245996237	6.42178662486651	6.25344613410466	-0.65176592642247	0.0182571459645723	0.15231006631443
Merged-chr6-83457604-2	chr6	83457104	83458104	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1212.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	4.00896867902883	4.19325600939753	3.85971099585355	3.66384118535077	3.6495544092413	3.71758991573795	-1.15653465340057	0.0296562005074546	0.207346704631903
Merged-chr4-129188974-4	chr4	129188456	129189456	+	913.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134151)	promoter-TSS (NM_134151)	586.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	5.96545670855812	5.99409265070183	6.13864481736214	6.23190183437441	5.97551917907203	5.71461875120712	-0.0524567411564885	0.867047543718967	0.969264869315596
Merged-chr13-5888970-4	chr13	5888468	5889468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27479.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.57693360680186	6.4135828946006	6.36820721722853	6.28010524390364	6.42560322925183	6.31012704596738	-0.188901409717779	0.48752964040458	0.828493716174828
Merged-chr4-21727000-3	chr4	21726480	21727480	+	748.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	-721.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	3.72647526040891	3.60733264879549	3.92413871722314	3.70364970756775	3.52943803457489	3.94601872324212	-0.0808002499891261	0.885466314824858	0.973611377589001
Merged-chr11-118182018-2	chr11	118181518	118182518	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	30724.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.56574771203676	2.52492395073941	2.68667354372911	2.40435854291896	2.44743554929266	2.81771982515711	-0.157231452645712	0.845640949741054	1
Merged-chr7-3292959-4	chr7	3292480	3293480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001093766)	promoter-TSS (NM_001093766)	-48.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	4.52344103418791	4.30902313462025	4.47774711234893	5.27780800450072	5.17831131798208	5.91139014527797	2.2913780431671	2.27059518735495e-07	1.46231953830829e-05
Merged-chr11-75162822-2	chr11	75162322	75163322	+	604.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001002764, exon 19 of 19)	exon (NM_001002764, exon 19 of 19)	5330.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	3.88459427862024	3.54891395931434	3.93354548750818	3.59179653552532	3.4236477897619	3.7631803483851	-0.690724598325928	0.230727850166696	0.626416175824539
Merged-chr2-170158194-8	chr2	170157721	170158721	+	896.089294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15546.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.36314795624076	5.40207811768021	5.64462557533163	5.66534998355541	5.74650569916683	6.05300819104161	0.662345212718315	0.0471392951377335	0.274887270994501
Merged-chr1-173419152-4	chr1	173418637	173419637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1467.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.04471472508178	7.00236606213466	7.15049554824556	6.99520543224053	7.18761889594155	7.07048033925403	0.0417372550849445	0.862247447421626	0.967996224966109
Merged-chr6-89300037-3	chr6	89299486	89300486	+	919.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14261.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	2.7030974254703	2.71187601675545	2.78478262173458	2.50141586433047	2.4297501363633	2.61270356562017	-1.30905136835115	0.0954263506637888	1
Merged-chr3-52267833-2	chr3	52267333	52268333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-504.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	3.90753235266768	4.1276782100828	4.38398935987069	4.01996627796815	4.14709390404821	4.00742746546369	-0.231127836840449	0.646094041234445	0.900913193287344
Merged-chr4-99186997-4	chr4	99186502	99187502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-6932.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	7.73514939451515	7.83928483019962	7.66495734365892	7.70425345085183	7.97296435896205	7.5049951849783	0.000832244643077981	0.99725675910093	0.999418755254495
Merged-chr13-9113952-4	chr13	9113442	9114442	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	20061.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.3091397828061	5.09216126081692	4.90025617572208	5.22740262802719	5.20665425502394	5.28299507665323	0.234386002788051	0.52439354991509	0.848674261900159
Merged-chr13-102666956-4	chr13	102666452	102667452	+	927.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-26595.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.26776511351795	3.00735820442415	3.17716565751682	3.22268728781815	3.47116759829117	3.30759134982465	0.770147623582924	0.23089903743321	0.626617341979841
Merged-chr17-36044952-4	chr17	36044467	36045467	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034909, intron 1 of 2)	MLT1F1|LTR|ERVL-MaLR	2006.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	4.33741926127251	3.84919323721975	3.99880296331353	4.27862160251918	4.05428087550151	4.1661645996117	0.23700260836047	0.642454582622609	0.899398873915991
Merged-chr9-102717678-4	chr9	102717209	102718209	+	867.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019764)	promoter-TSS (NM_019764)	-95.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	2.5816023712111	2.71846518456825	2.734164375767	2.65438006531059	2.63508485974106	2.48656646663499	-0.451694617378021	0.558660241959677	1
Merged-chr4-129541976-1	chr4	129541476	129542476	+	583.0	f1_balb.idr	intron (NM_008228, intron 1 of 13)	intron (NM_008228, intron 1 of 13)	670.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	4.15542159946867	4.37152328790165	4.748379021251	4.26599600780146	4.34530865232623	4.39306643551013	-0.264111539005936	0.578055492816077	0.872303979801236
Merged-chr3-116206550-2	chr3	116206050	116207050	+	679.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46934.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	5.93055094034682	6.22549098266713	6.00539384570501	5.84792204971025	6.02128874026338	5.62453212537126	-0.363570868118524	0.25235486105318	0.649830747012104
Merged-chr7-24611326-4	chr7	24610826	24611826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-2.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	4.35695544025437	4.27300279702982	4.71097343956933	4.66610435566089	4.33718359311618	4.54618266970332	0.175219767737716	0.701197454390097	0.921187264709273
Merged-chr8-106528210-4	chr8	106527701	106528701	+	833.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	B4|SINE|B4	17349.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	3.13426128184496	2.85949753327919	2.85381408199918	2.88699751567657	2.74947820507952	3.04790364043478	-0.307959099467206	0.668685252473343	0.909328013463455
Merged-chr3-103738431-4	chr3	103737933	103738933	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	-432.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	3.8161378392681	3.67127031049623	3.71930183276235	4.17470295698566	3.86830114193871	3.99604065463817	0.872151380687831	0.0957979269902187	0.412649682093602
Merged-chr4-139615442-2	chr4	139614931	139615931	+	937.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001205173, intron 8 of 8)	MTD|LTR|ERVL-MaLR	-7463.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	4.92931076109331	4.56819789509898	5.02118367999	5.42776266497009	5.5348260021192	5.6243729513165	1.41144222129035	0.000183147966892162	0.00465608800157747
Merged-chr4-34886066-2	chr4	34885566	34886566	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3118.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	4.6816002838741	4.27824349259743	4.6572265127749	4.59938207227809	4.15749087343039	4.34974887170162	-0.427482895931393	0.36526291938025	0.750422106947654
Merged-chr1-185238639-4	chr1	185238101	185239101	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 7 of 34)	intron (NM_001163754, intron 7 of 34)	-4325.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	4.77458309951797	5.15670199324702	5.18341282383187	4.80290356253663	4.9502912603117	4.79314968586984	-0.414257814758219	0.29874950193755	0.695455140924901
Merged-chr9-44410846-2	chr9	44410346	44411346	+	560.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024266)	TTS (NM_024266)	3132.0	NM_024266	75617.0	Mm.292027	NM_024266	ENSMUSG00000009927	Rps25	2810009D21Rik	ribosomal protein S25	protein-coding	2.96090177875449	2.91882000572837	3.2036965373022	3.13648181238009	3.17725849750454	3.38198673075701	0.900156698302037	0.175474961154933	0.555421506686689
Merged-chr6-39257030-5	chr6	39256367	39257367	+	791.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50094.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.73627784846962	4.60610663301101	4.81150332419834	4.76971643193013	4.77556940039334	4.5121716640439	-0.0344814794122917	0.933145420425662	0.985356091252617
Merged-chr16-45651685-4	chr16	45651185	45652185	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2433.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	3.68206147832491	3.6241926299425	3.96413035630438	4.80058691426456	4.50107502087767	4.8335284705999	2.79791342349411	8.27258891439124e-08	6.03811910867251e-06
Merged-chr9-35163846-2	chr9	35163346	35164346	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	12141.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	4.59698437997505	5.15172087860292	4.95960588385468	5.4588939112701	5.34768881914563	5.75442887242781	1.20908298342541	0.00259894417640608	0.0377602491759031
Merged-chr11-3289398-4	chr11	3288912	3289912	+	912.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045108, intron 1 of 5)	CpG	281.0	NR_045109	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	4.45999108745487	4.48608511888171	4.75647459103501	4.57859052510865	4.10100135692953	4.92264446205351	-0.00248159465217936	0.995987208458352	0.998961028701257
Merged-chr3-142595388-2	chr3	142594888	142595888	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	541.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	4.29911182482102	4.69529236780784	4.92698262085254	5.77500374855838	5.57766546121686	5.69073740583518	2.1506956889993	9.40953230294975e-08	6.76705586744894e-06
Merged-chr4-139352490-4	chr4	139351971	139352971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039200)	promoter-TSS (NM_001039200)	105.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	6.66103248627225	7.09024938254847	7.1949582397392	7.07772035908203	6.8817425616923	6.75405447568555	-0.126804257047209	0.651836207707625	0.902896807825606
Merged-chr4-35156313-4	chr4	35155824	35156824	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1160.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	4.79648603072262	4.2240407313804	4.43804167247804	4.33575513417376	3.81709501796655	4.14010966710282	-1.06605711046901	0.0403803977288868	0.250333194324632
Merged-chr17-27612187-4	chr17	27611692	27612692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10772.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	3.36419955683086	3.00378597310555	3.13831702136577	3.14366223818415	3.24408194606514	3.26869289561402	0.164936386036242	0.800664561066603	0.952653061321331
Merged-chr11-5793355-2	chr11	5792855	5793855	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4872.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	3.57483808090217	3.86713911765001	3.63415189762789	3.97745004841654	3.67652951384729	3.81104856138286	0.401979182400174	0.467572073257235	0.818056375344009
Merged-chr17-35838329-4	chr17	35837829	35838829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011655)	promoter-TSS (NM_011655)	-28.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	5.60593583662563	5.80011962848179	6.32615708681871	6.17931148980335	6.42959342170565	6.15171904186935	0.565024276692874	0.0960686482764094	0.413259581542857
Merged-chr1-87857023-4	chr1	87856526	87857526	+	827.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 1 of 29)	L1MB7|LINE|L1	-2727.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	4.34924680165738	4.48785708409175	4.40935379298352	4.11498406266102	4.00765932032556	3.78645313217736	-1.21047357716114	0.0140790688199375	0.127322156110136
Merged-chr1-39478707-4	chr1	39478202	39479202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357522)	promoter-TSS (NM_001357522)	45.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	5.97836841582432	5.78624998306767	5.74384322205046	6.10442623800183	5.92728285298398	5.54593289693702	0.0812827858398373	0.805564247959502	0.953956034266138
Merged-chr16-37870395-2	chr16	37869895	37870895	+	596.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1995.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	5.63960532571622	5.72178489994231	5.46751405116554	5.61798960468779	5.77472487939012	5.94874268375956	0.291156851083348	0.368735660874109	0.753594740654151
Merged-chr2-25355643-2	chr2	25355143	25356143	+	818.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_031843, exon 4 of 13)	exon (NM_031843, exon 4 of 13)	689.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	3.89492245018851	4.33817705586578	3.75141994217294	3.83387539804308	3.21054968585801	3.59787605388526	-1.47075193165733	0.0234124341957016	0.179267675030454
Merged-chr8-106415999-4	chr8	106415521	106416521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	682.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	7.02671310008625	7.04022289183039	7.06763175797219	7.15992342964395	7.38645024542349	7.03234271902619	0.25197893596882	0.30663387781149	0.702880028965702
Merged-chr6-90369520-4	chr6	90369021	90370021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030260)	promoter-TSS (NM_030260)	27.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	5.9936253735715	6.13337065631346	5.90571606186118	6.25553336737651	5.80990288273032	5.75924741031582	-0.0944011726280056	0.769609548457325	0.943159069002122
Merged-chr11-95354785-2	chr11	95354285	95355285	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17767.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	7.69791980205076	7.68846249930831	7.3297442867478	7.55258649183313	7.93451780987325	7.47437996858499	0.130775554097965	0.617255443162718	0.888808400312019
Merged-chr9-62933158-4	chr9	62932635	62933635	+	870.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	47744.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.75232641220918	6.67665162943055	6.37041678653614	6.68419800274867	6.9346669820452	6.39011989525015	0.131287833487222	0.656738039856486	0.904693205515276
Merged-chr2-163758364-3	chr2	163757859	163758859	+	932.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8120.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	5.21417907674725	5.02049386270805	4.53367578508997	4.0802800372505	4.39863454139677	4.15970950960499	-1.7833835421314	0.000270500593065459	0.006399719461982
Merged-chr12-52504781-5	chr12	52504179	52505179	+	779.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11398.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	6.87789101211979	7.22260344187715	7.19784554402445	7.26954536455062	7.01870613702476	7.06965505503015	0.0252476111254718	0.921682176328846	0.982542868764899
Merged-chr13-23519091-4	chr13	23518591	23519591	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11953.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	4.90854878950389	4.92267131125692	4.79526494461659	5.17257706808516	5.10182213424751	5.47955102096818	0.778127010939775	0.0405677524337362	0.251064451060344
Merged-chr6-39055271-4	chr6	39054756	39055756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	12330.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	4.55445884408417	4.3892077293488	4.34127965012218	4.88107188396556	4.41491024011181	4.26564372118928	0.29138864762364	0.53606582455453	0.853846958834865
Merged-chr18-82815890-4	chr18	82815377	82816377	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40020.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	3.48675448138951	3.31493839452476	3.5763831445884	3.80870020913327	3.19493704696587	3.42799860718978	0.15356443984529	0.809776765326112	0.954796906768851
Merged-chr10-30789779-4	chr10	30789314	30790314	+	765.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	13512.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.95205884896441	4.04680027990959	3.99525306336264	4.00137423012891	3.57427916392118	4.24243337206433	-0.117579002338578	0.831420019765777	0.960444904168444
Merged-chr7-80205821-2	chr7	80205321	80206321	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	7380.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.87753972800007	3.73680332695611	3.65932020572109	3.9522797436181	3.51961462582316	3.56152529213461	-0.232320307916498	0.684171271524301	0.915794333622799
Merged-chr16-50366784-4	chr16	50366260	50367260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	65629.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.66368254801006	4.53418190698962	4.10909579039683	4.50283422616852	4.23791570565877	4.50945349432357	-0.127353338119347	0.789651111432733	0.949278919326382
Merged-chr1-170371502-4	chr1	170370965	170371965	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	62604.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	4.88144808264725	4.90230999929773	4.9867078482387	4.70995862728111	4.6288962674824	5.14719324751706	-0.195004936675551	0.634291493220781	0.896306748317281
Merged-chr2-52942935-3	chr2	52942458	52943458	+	829.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85090.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.44149522149125	7.51777815363041	7.39436266274744	7.34530287374201	7.41130499608872	7.04967509175847	-0.245808224586465	0.308649477635419	0.704623181932835
Merged-chr2-120652998-4	chr2	120652503	120653503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43408.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	7.58364746436106	7.41980727472507	6.8658986345406	7.749482008111	8.07629596834514	7.48843856699755	0.67573229090646	0.0245103810627985	0.184549795264984
Merged-chr2-173537343-1	chr2	173536843	173537843	+	656.0	f1_c57bl6.idr	Intergenic	Intergenic	14751.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	3.35297949894173	3.27108381747517	3.69888086568735	3.89573815452797	3.89660228150054	3.66468416103241	1.35419472946054	0.0218458327718496	0.171259473646133
Merged-chr7-75684738-1	chr7	75684238	75685238	+	596.5	f0_balb.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-163600.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.09903169395233	4.09746894312325	4.12360140628427	3.89565866664017	3.75557687241513	4.14621500713437	-0.524741131908816	0.298466849796534	0.695174900936234
Merged-chr12-91589123-4	chr12	91588608	91589608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	541.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	8.32614507691815	8.44761038530125	8.05153054498803	8.34556642833644	8.32138552458443	8.39377831023879	0.0845892636068537	0.701033787694284	0.921117681343913
Merged-chr14-18731220-3	chr14	18730720	18731720	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360327, intron 3 of 5)	intron (NM_001360327, intron 3 of 5)	162193.0	NM_001360328	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	2.83845775430484	2.93061985654946	2.9039132898808	2.62151808888216	2.73780645726687	2.97588464495774	-0.556963450109994	0.447836870077577	0.806781204759137
Merged-chr1-91955068-4	chr1	91954563	91955563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 22 of 26)	intron (NM_207225, intron 22 of 26)	153602.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	3.98349113145921	3.92778110303828	4.39024342788586	3.68330685035265	3.83395327655595	3.84142104316414	-0.97111438560751	0.0699184878733409	0.34618524171575
Merged-chr18-44828923-4	chr18	44828410	44829410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163013, exon 1 of 30)	exon (NM_001163013, exon 1 of 30)	245.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	8.20873497074733	8.4041596101868	7.98807246729235	8.06554787763696	7.97924052908095	8.01392902714851	-0.280139343508009	0.214265642178737	0.607446165658035
Merged-chr14-79509116-4	chr14	79508608	79509608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6566.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.92676074498297	5.86797629513619	5.7469203021541	6.14324707821941	5.98726176119053	5.78252546316867	0.23035288838945	0.452959738495215	0.809516384045816
Merged-chr2-167694283-19	chr2	167693963	167694963	+	867.5912480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	3286.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.41031278688819	5.28353536672228	5.52345919741908	5.26221991331997	5.20634487220166	5.76103620720442	0.031376484262686	0.932236376194941	0.985084887615928
Merged-chr17-28327722-3	chr17	28327265	28328265	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-706.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	7.58710711967122	7.78956762884695	7.39914854949191	6.85317200386	7.04643167681864	6.66417866018353	-1.09161481069536	3.26752612550312e-05	0.0011074717468467
Merged-chr9-32544846-3	chr9	32544321	32545321	+	710.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3369.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.66901187567825	3.5516632492105	3.50353081764156	3.7152755448035	3.17302165047985	3.46267867154516	-0.398379028235059	0.5224596828422	0.847630327909223
Merged-chr13-88459693-4	chr13	88459195	88460195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-361777.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	5.75281370098824	5.74540142148926	5.85246487837625	6.07532075644038	6.31874073361852	6.39439757361885	0.842426033881372	0.00445744548844042	0.0564700250003275
Merged-chr2-91921977-4	chr2	91921499	91922499	+	920.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-190.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	2.42372530620598	2.50571749736765	2.54345819010534	2.93996206766331	2.58057511927923	2.80985917017258	1.68009928384766	0.0363386679137692	0.234602958693481
Merged-chr17-48407376-2	chr17	48406896	48407896	+	758.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	2424.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	3.2005414822377	3.50984389152485	3.25912741643515	3.1589238157737	3.11426432276818	3.38650030856207	-0.469522613791479	0.46441591431946	0.816412565447834
Merged-chr14-52267536-3	chr14	52267043	52268043	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172601, intron 5 of 7)	L1MB3|LINE|L1	-11603.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	3.59475261354877	3.49420014468816	3.88911251773609	5.27617750188774	5.46027146530801	5.45025513310704	5.91527174746534	9.87568482372091e-14	2.26373548984069e-11
Merged-chr13-41097853-4	chr13	41097378	41098378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12110.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	4.03644829075104	4.28903653367856	4.08794782357049	3.98658760383703	4.04633183820469	4.15637808301667	-0.244786775579958	0.613699980623565	0.887300906025089
Merged-chr5-38483712-4	chr5	38483219	38484219	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012363)	promoter-TSS (NM_001012363)	-334.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	3.12255289866652	3.07030449307905	2.95655535399344	3.17333713424373	3.10566731624448	3.32236674243726	0.620386489242297	0.344551564527646	0.733150745942016
Merged-chr14-19416647-6	chr14	19416159	19417159	+	970.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	185928.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	6.19245349607124	8.01951706906071	6.20735808178892	6.95332757492929	7.2507047657271	6.80267729839165	-0.18028754326763	0.844363656612535	0.96373428957366
Merged-chr8-41044076-4	chr8	41043571	41044571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	L1MB1|LINE|L1	-2140.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.20034909118646	5.03655680993604	4.80965911681757	5.18314225631298	5.04412942910508	5.23532653925585	0.239509138288052	0.526606098606662	0.849575940031528
Merged-chr5-135614794-4	chr5	135614210	135615210	+	919.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17944.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.94528520588771	4.86401700078662	4.91879977551627	4.51992833816496	4.14879322448921	4.18100036086297	-1.51173312507957	0.00063950797909724	0.0127607146102454
Merged-chr17-71267353-2	chr17	71266853	71267853	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	43658.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.56127132975548	3.50547130588539	3.44298173555709	3.07813058368974	2.81094366707503	2.97778189825503	-2.60329455031571	0.000329847442422974	0.00753802416619906
Merged-chr15-8663928-4	chr15	8663423	8664423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	L3|LINE|CR1	46884.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.3306274952797	3.27755694886455	3.37932246750081	3.45646300078418	3.62422525799902	3.94843353340617	1.31024887171375	0.0297760421526839	0.20787020013764
Merged-chr3-104092957-4	chr3	104092455	104093455	+	916.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133853, intron 3 of 21)	intron (NM_133853, intron 3 of 21)	-124639.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	3.28113119477073	3.26261378905187	3.16409896993352	3.01384715286582	2.84209819102162	2.93176446598452	-1.45468170656864	0.0331810168490798	0.222176748548588
Merged-chr14-25458561-5	chr14	25458059	25459059	+	998.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	-626.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.24833249609048	4.29592455354495	3.99224778231737	3.66220236397527	4.0397185162766	3.96106066210315	-0.847313450430568	0.106770137028742	0.436131870574925
Merged-chr17-78315899-4	chr17	78315418	78316418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 7 of 16)	intron (NM_015800, intron 7 of 16)	102234.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	3.66005779351985	3.80349350125962	3.72812270296142	3.49268082093888	3.53378423191178	3.4149429074164	-0.871543349762644	0.123218252184195	0.46964642109973
Merged-chr10-77517195-4	chr10	77516692	77517692	+	983.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	5.21387019529314	5.17303883754998	5.25081430765847	5.39088622928962	5.07689172020425	5.25068993411465	0.0611062689506708	0.863823697776999	0.968269312109804
Merged-chr9-85375279-1	chr9	85374779	85375779	+	641.666687	f0_balb.idr	Intergenic	Intergenic	-48129.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.880471910672	2.99675273927522	2.97150058382186	3.20352563792643	3.16982970717492	3.16426345648519	1.04172044292644	0.115436956255144	0.453656933645588
Merged-chr19-55887983-4	chr19	55887493	55888493	+	815.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-7328.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.35643795032821	3.30012779087841	3.41926186587453	3.4614499885202	3.39430617347971	3.48997119875574	0.346348343706685	0.554511798605512	0.862826181827127
Merged-chr13-38296830-3	chr13	38296332	38297332	+	937.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48884.0	NM_007556	12161.0	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	4.52998078913088	4.44176420398351	4.51463962582165	4.93618054279488	4.86733883592909	4.74771138606045	0.855126551906841	0.0346389359654057	0.228146409145879
Merged-chr9-99096841-3	chr9	99096345	99097345	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 4 of 23)	intron (NM_029094, intron 4 of 23)	43366.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	2.98461431711249	2.70531325883815	3.14092609218897	2.93455749514959	2.9765709632748	3.15691188482454	0.332348501768205	0.642520463504074	0.899438418121699
Merged-chr13-12572979-2	chr13	12572479	12573479	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	7096.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	3.08529206164807	2.97280220687287	3.55787836136781	3.27130396656648	3.30926235773201	3.31701920985929	0.307253175218257	0.648863260870588	0.901963404198945
Merged-chr2-45195891-2	chr2	45195391	45196391	+	959.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-78449.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.11636136977041	7.43457434199834	7.45447698099876	7.41923633855565	7.68510325096283	7.57035426232581	0.329107519116779	0.179988573250651	0.561569207808323
Merged-chr15-99771977-3	chr15	99771475	99772475	+	721.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028015, intron 1 of 9)	CpG	540.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	5.17705491703477	5.23506092440781	5.50209557171785	5.18200227804975	4.57648090029484	5.05281767463987	-0.73284611898523	0.0736995728634946	0.356741946412197
Merged-chr17-26501182-5	chr17	26500716	26501716	+	815.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7256.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.63083547426389	4.41621222400726	4.65529822442335	4.02240057715173	4.28864223575028	4.35772841826004	-0.878367275967905	0.0566126776703396	0.306801334088421
Merged-chr2-36237237-3	chr2	36236778	36237778	+	793.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008969, exon 3 of 11)	exon (NM_008969, exon 3 of 11)	6852.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.96830704979228	6.03337903605048	6.59728478724965	6.63773817854048	6.43537481893895	6.32357757887346	0.421806858302444	0.187298380733642	0.572252466185096
Merged-chr19-55688362-2	chr19	55687833	55688833	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13871.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.68210875197665	4.42373804514639	4.52769564212175	4.94748940535573	5.21470024537853	5.27927479697303	1.35103357675766	0.000857554757419806	0.0159989722545711
Merged-chr1-57377605-4	chr1	57377099	57378099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	-21.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	6.4870863924078	6.83991471147227	6.60764769457919	6.66385337946048	6.49859364957489	6.2250319647468	-0.277358204224628	0.33610470028341	0.726141140914524
Merged-chr16-77444209-4	chr16	77443717	77444717	+	813.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114889.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	2.29177977061117	2.03801100360044	2.1687624473785	2.31353137265964	2.37698976980719	2.50588025336316	1.58608242406911	0.0841193900905248	1
Merged-chr4-41569671-4	chr4	41569200	41570200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159583)	promoter-TSS (NM_001159583)	-94.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	6.04353193703166	6.25263371351548	5.99223257130963	7.04888753183585	6.94606505500764	6.41212848343964	1.18148739753388	0.000115655602215286	0.00320675486475491
Merged-chr14-75130080-1	chr14	75129580	75130580	+	542.0	f1_c57bl6.idr	intron (NM_027581, intron 1 of 9)	AT_rich|Low_complexity|Low_complexity	803.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	4.44189204694245	3.91608619461191	4.06816745904124	4.37693993158433	4.1728134784456	3.87255991554502	-0.011902962537127	0.982228752813743	0.995992226862322
Merged-chr5-135778518-4	chr5	135778003	135779003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008617)	promoter-TSS (NM_008617)	-118.0	NM_001289557	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	7.20366592032978	7.17778385665098	7.22284709946659	7.15475171492593	7.14093490180821	6.98646756606378	-0.149224795107861	0.524814194594923	0.848833934932934
Merged-chr13-95843865-2	chr13	95843371	95844371	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	48051.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.59840353686836	4.64907069581973	4.87318701438379	4.96770007568702	5.08824569739252	5.37806227470688	0.978537503433832	0.0137568510657322	0.125316542774575
Merged-chr15-27702404-4	chr15	27701895	27702895	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20853.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.51446631637338	6.70197497610604	6.31713741794306	6.13785723753164	6.45828612013241	6.33726013357158	-0.339894441864811	0.240209003568881	0.637248121359463
Merged-chr17-13940632-4	chr17	13940094	13941094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7779.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	5.49010483522395	5.62355342516715	5.4874455504081	5.15779343290664	5.19760471834403	4.77368872122383	-0.926473877459294	0.012507162776487	0.11765924254448
Merged-chr2-160383053-3	chr2	160382556	160383556	+	682.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15991.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.65036739254795	2.51051878799369	2.70457202682401	2.62343382536076	2.37273095924263	2.71720352681862	-0.272519950995314	0.732804504794548	1
Merged-chr9-118860074-1	chr9	118859574	118860574	+	545.0	f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-66462.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.01471209278791	3.31035149634076	3.26320069409448	3.1931984176325	2.95079943046679	3.4923247362777	0.0941832392030884	0.890765569767152	0.974561590942893
Merged-chr2-34372807-4	chr2	34372320	34373320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-775.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	5.58288699442757	5.4057329255392	5.6441283466225	5.84774009704702	5.21779534126517	5.54207756987308	0.0262002143741795	0.94265353239824	0.987202156853573
Merged-chr4-146454336-2	chr4	146453836	146454836	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	intron (NM_001085522, intron 1 of 3)	5306.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	3.21361827851349	3.41955223361611	3.01946992014167	3.17200387691724	3.22462798080251	3.69871149295496	0.585479958943334	0.397395952109293	0.774278774758806
Merged-chr1-156029254-1	chr1	156028754	156029754	+	668.0	f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	5563.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.34563147268282	6.51470160856871	6.47238568591646	6.42446526447582	6.58279616974676	6.74379343163557	0.224902394389909	0.406426180768793	0.780676741566939
Merged-chr17-26781533-2	chr17	26781033	26782033	+	842.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172149, intron 1 of 5)	intron (NM_172149, intron 1 of 5)	454.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	4.86719098317918	4.96316557614543	4.97371726537717	4.93677742155521	5.00375749260994	4.73321397011142	-0.0597555831757304	0.876545941223141	0.97133542879415
Merged-chr19-45575111-2	chr19	45574611	45575611	+	907.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	14526.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	2.74168500253731	2.66657828055726	2.58079862994155	2.68656115824018	2.58828378603326	2.7800660952189	0.083640788278719	0.911468353880448	1
Merged-chr19-29501189-5	chr19	29500648	29501648	+	850.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	20839.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	7.14782334122577	7.51600617513394	7.1368231934781	7.41378538217249	7.51360466712256	7.14277733342902	0.130201598738129	0.61883363200706	0.889515655407396
Merged-chr5-124353761-5	chr5	124353313	124354313	+	855.2899779999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013812, intron 1 of 3)	CpG	815.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	5.15577364260791	4.61552873704647	5.18317461605675	5.24510659406453	4.40678602427726	5.01940383450936	-0.15205255624994	0.750263014813464	0.937550343416037
Merged-chr11-98785239-2	chr11	98784739	98785739	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9862.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	7.10236668742181	6.8421159355023	7.10040311116464	7.15193652013061	7.27430857076351	7.36495637568504	0.372917855192532	0.12975574119413	0.481840492853714
Merged-chr1-34472060-2	chr1	34471560	34472560	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 11 of 14)	intron (NM_011206, intron 11 of 14)	12314.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	5.32994990370294	4.93220074679577	4.92293676667759	5.43811720862441	5.24725158608418	5.39644744419687	0.556323795726463	0.139071363871888	0.498228280592959
Merged-chr1-134414705-4	chr1	134414189	134415189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	-689.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	7.29986005382535	7.35429272747621	7.37996584749038	7.19683732298706	7.46802499958597	7.20961131254967	-0.0569332532527084	0.810785669627738	0.955096593239846
Merged-chr3-127294985-1	chr3	127294485	127295485	+	764.0	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	114073.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.9231442525306	2.88983489565384	3.33723903915804	3.46044203060268	3.76332174428259	3.41021359224552	2.13438538678447	0.00252116700510671	0.0369723764823615
Merged-chr18-80709729-3	chr18	80709226	80710226	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	-1553.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.13202688352117	4.92394770696232	5.14248438666419	5.07036629013778	5.04177281391132	4.88787728660716	-0.122185140268591	0.743537419807299	0.935668334704421
Merged-chr9-21090964-2	chr9	21090464	21091464	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038081, intron 1 of 16)	intron (NR_038081, intron 1 of 16)	1024.0	NM_027911	71766.0	Mm.196137	NM_027911	ENSMUSG00000010205	Raver1	1300006N24Rik|AA050359|mKIAA1978	ribonucleoprotein, PTB-binding 1	protein-coding	3.92255633532749	3.78080347514312	3.81138853559845	3.7828320650958	3.83554007843986	3.97857985904968	0.0718115797083675	0.889314851832151	0.974223368677256
Merged-chr2-27704045-3	chr2	27703571	27704571	+	677.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-5221.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.56372893990634	5.72308809285444	6.00789851695469	5.69958835898396	5.53428789300722	5.79578342697446	-0.1720997749279	0.603586016279832	0.882688060083171
Merged-chr11-99100097-2	chr11	99099597	99100597	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-10791.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	3.35193187776259	3.15715889614493	3.11642019093147	3.51703750976788	3.01364963727308	3.3097542317758	0.322051104339878	0.63135936076253	0.895122791781359
Merged-chr7-118126958-2	chr7	118126458	118127458	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019419, intron 2 of 5)	intron (NM_019419, intron 2 of 5)	2667.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	3.93399228931319	3.70632707118828	4.03040946872532	4.00080294836579	4.08183897315427	4.35744582565753	0.762974376982467	0.136896906864348	0.494310206464419
Merged-chr15-77874474-4	chr15	77873978	77874978	+	901.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32303.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.86890292161531	3.83878021430191	3.61497450141857	3.95245948403523	3.87728675605223	3.68761826600972	0.199351536208684	0.711457681693847	0.924661173262022
Merged-chr13-107676996-4	chr13	107676506	107677506	+	915.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10391.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.09205422823541	2.88784457183215	2.88668203259525	2.75735776491806	2.55877542728925	2.7106125709716	-1.60323381838068	0.0363970227893103	0.234714676606443
Merged-chr4-135273855-2	chr4	135273355	135274355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.47216887894351	4.47649281977742	4.16025803150131	4.20104657102992	4.01745683066032	4.32241729809714	-0.565834972075607	0.232777999076	0.629066394953106
Merged-chr5-67891949-2	chr5	67891457	67892457	+	782.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-44526.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.89121731588515	3.66248717036818	3.91106693255757	4.30699520309415	4.04785627545806	4.12661394340059	1.02667536753518	0.0439369853348587	0.263737870308998
Merged-chr19-32912111-3	chr19	32911627	32912627	+	851.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31C_MM|LTR|ERVK	154550.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.45611681092666	3.83448214694946	3.76425685744841	4.25934240649384	4.60329604366682	4.78603281332996	2.54783215976777	5.54419946749273e-06	0.000241529711670751
Merged-chr11-61750249-2	chr11	61749749	61750749	+	740.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	11839.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	5.05375525618904	5.18628396870909	5.10952730369693	5.23634161892933	5.06322762782223	5.23923863938342	0.118151168054582	0.741738653973445	0.934945994271166
Merged-chr3-32737523-1	chr3	32737023	32738023	+	546.0	f0_balb.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	460.0	NM_025316	66046.0	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	5.8627399047192	6.3609675661544	6.30523264538042	6.23161508724827	6.09721487495605	5.85435410123176	-0.197086728099966	0.539878756035511	0.856187246516836
Merged-chr10-80406803-4	chr10	80406269	80407269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025650)	promoter-TSS (NM_025650)	52.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	6.15285293382053	6.40991940744374	6.55290708993445	6.51575359233412	6.54317385011621	6.57855950006991	0.276754829988185	0.318019129389924	0.711817713144205
Merged-chr10-81184717-2	chr10	81184217	81185217	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	799.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	3.45264376731091	3.25042538149093	3.43706921886518	3.60446468847463	3.58144296374894	3.66803023987592	0.870593237052583	0.133329561747911	0.488425031871102
Merged-chr17-35001946-5	chr17	35001429	35002429	+	936.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011690, intron 2 of 29)	intron (NM_011690, intron 2 of 29)	1022.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	5.85333562064192	6.01918446322357	5.94746821360266	6.1465163734263	6.24538885716325	6.186275215707	0.434003920173962	0.12987728034485	0.482060341820603
Merged-chr19-60962829-2	chr19	60962324	60963324	+	677.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	73075.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	2.97549024418114	2.98559625621398	3.10750027851707	2.95842360513508	2.92477299019384	3.1222688386015	-0.0993314627683344	0.88202203399587	0.973002238292341
Merged-chr15-78330813-2	chr15	78330313	78331313	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	B4|SINE|B4	4823.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.81414832671188	4.16504320244244	4.22306879733102	4.08004311227109	3.93400273767136	4.01607018390654	-0.193597765796188	0.703076531372502	0.922108924938678
Merged-chr2-91954008-3	chr2	91953441	91954441	+	911.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-3593.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	4.41740567900287	4.52991859046944	4.76811298566573	4.62446567659792	4.4670570270479	4.96867224671329	0.28664506601122	0.518026695648066	0.844960407964328
Merged-chr13-81785333-2	chr13	81784833	81785833	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	B4A|SINE|B4	2086.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	4.15384847328453	4.43797830625879	4.56721120912916	4.38613913461784	4.60523779667198	4.09178618924913	-0.00564814414023095	0.99076837249608	0.998026036719957
Merged-chr4-149955145-4	chr4	149954626	149955626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029035)	promoter-TSS (NM_029035)	-120.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	4.99440979847009	4.42549642377568	4.45069599396508	4.66980123336315	4.42146278008172	4.47441414750246	-0.32315326541719	0.486093655109722	0.827646803246881
Merged-chr7-101302022-4	chr7	101301502	101302502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	86.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	8.690204491513	8.6892818722706	8.18598133235109	8.50811651169498	8.45666279071932	8.05979320993103	-0.259852253244936	0.310852992976961	0.706121153452171
Merged-chr5-138195178-4	chr5	138194648	138195648	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177878, exon 1 of 1)	exon (NM_177878, exon 1 of 1)	834.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	8.03120699185141	8.06915742632359	8.01385195706321	8.042217633339	8.31136585627853	7.97977679897063	0.123066716125738	0.578002452661746	0.872271398173251
Merged-chr15-80582754-4	chr15	80582254	80583254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289442, intron 1 of 7)	L3|LINE|CR1	10157.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	5.43371530112798	5.7401333730968	5.42164192183049	5.62408125326962	5.51772129998462	5.18409461608497	-0.156165036864603	0.660510862426888	0.905981809862142
Merged-chr19-10946491-2	chr19	10945991	10946991	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2775.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	6.22336249087335	6.25639352090108	6.43157904843929	6.30877298919598	6.38930606372588	6.62487787871849	0.230538884229022	0.409860920910229	0.783037226945994
Merged-chr7-141638835-2	chr7	141638335	141639335	+	938.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330001, intron 31 of 33)	intron (NM_001330001, intron 31 of 33)	16484.0	NM_001330001	353328.0	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	2.36335901398908	2.42753976586995	2.54933063380166	2.42475110014569	2.15620428516388	2.5616114994188	-0.367412251863399	0.671840449446704	1
Merged-chr5-134519984-2	chr5	134519509	134520509	+	922.5833130000001	f0_balb.idr|f0_c57.idr	intron (NM_001039162, intron 3 of 15)	MTD|LTR|ERVL-MaLR	32425.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	7.04872061579761	7.01813231341035	6.58500571668893	6.89431292380713	7.22731536791021	6.53202902684627	0.0309059906851717	0.920214601976571	0.982298895447876
Merged-chr6-125279951-4	chr6	125279457	125280457	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009446, intron 4 of 4)	intron (NM_009446, intron 4 of 4)	6124.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	2.81221435556616	2.56967551228645	2.68644482283775	2.91876314429602	2.81431029310723	3.00508652374382	1.12258456430076	0.131084434207665	0.483837071958386
Merged-chr10-117840156-2	chr10	117839656	117840656	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5818.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.8103536993651	6.70668438260683	6.71001615230576	7.01595575539615	7.09888603721086	6.78487666535569	0.366900308829289	0.148727290637383	0.514544110405195
Merged-chr7-139979151-4	chr7	139978647	139979647	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-392.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	4.60832839073581	4.4297611729331	4.6118558931852	3.90216137522481	3.81807990661215	3.91884851721081	-1.92997013002494	7.71362271936579e-05	0.00227924403136715
Merged-chr8-85119706-2	chr8	85119195	85120195	+	828.375	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001357366)	promoter-TSS (NM_001357366)	-4.0	NM_001357366	244556.0	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	4.46973614720558	4.49186765475111	4.27068555487097	4.14898874348065	3.98870075921084	4.42570106491062	-0.625543037519029	0.188014873862997	0.573416108077913
Merged-chr15-99817503-4	chr15	99816994	99817994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	CT-rich|Low_complexity|Low_complexity	2655.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	5.81837672908843	5.37080935464242	5.34877466040253	6.47061045239525	6.19285856257001	5.5807604104995	1.06253592300991	0.00597738249346137	0.0695869106254715
Merged-chr2-6717929-2	chr2	6717429	6718429	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3733.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.64046876850317	5.56826997780951	5.76101662805499	5.73477644914692	5.77155921161862	5.87110911953642	0.251803380923959	0.41675741800601	0.787630858640525
Merged-chr9-47531778-2	chr9	47531278	47532278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	CpG	1426.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.32944975935439	5.27205406186729	5.18837323462484	5.10562694228524	4.71970160684965	4.73055797604313	-0.8529528490188	0.0269330930511569	0.195437147492332
Merged-chr19-55700361-2	chr19	55699868	55700868	+	790.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1836.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	6.92336774232952	7.35341456032133	7.33162618045848	7.09108786621013	7.12423616703837	6.88511889051747	-0.258869883206982	0.327621655213038	0.719793584677403
Merged-chr5-140845011-3	chr5	140844502	140845502	+	674.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14571.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.68119494736817	3.86253940883212	4.05199535679686	3.07402017083634	2.93367199022345	3.06531309903522	-4.05422652865089	1.02392472722239e-06	5.52520938409342e-05
Merged-chr7-89405150-3	chr7	89404669	89405669	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360746)	promoter-TSS (NM_001360746)	803.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	3.96444120201688	4.23553639495787	3.78411529920211	3.70736185220978	3.26142280895574	3.51716089961284	-1.7401876270565	0.00415773289093765	0.0534461051118708
Merged-chr19-40640604-1	chr19	40640104	40641104	+	776.0	f1_balb.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19166.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.00197585435747	6.90669241243711	6.78575302474958	6.63909603927225	6.38588732297831	6.6715162211854	-0.538446587122711	0.0404584533531058	0.250667683291529
Merged-chr5-72822622-3	chr5	72822122	72823122	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	45826.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	3.45241482974514	3.43672139293795	3.74948945086361	3.18901079702766	2.97662134492852	3.47418030213572	-1.30554095097236	0.050032246658283	0.284830540499618
Merged-chr8-126538249-2	chr8	126537749	126538749	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55187.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.96463561736591	2.80137224769606	2.90922103722644	2.81120579373679	2.54742025794502	2.60226254925216	-1.2665699717281	0.0992263343967248	0.420003298020281
Merged-chr2-157561365-4	chr2	157560850	157561850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010923, intron 2 of 2)	intron (NM_010923, intron 2 of 2)	1272.0	NM_180960	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	2.50658199456955	2.63579799737731	2.90532956246468	2.65528377861866	2.55503417035574	2.55429274511717	-0.545686373058588	0.48713903156509	1
Merged-chr7-45465160-2	chr7	45464660	45465660	+	644.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	1738.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	3.08349751558517	3.22821000695057	3.19903811545237	3.18755305442703	3.32556901764546	3.15344754019471	0.244396479105267	0.700298986916022	0.920919335036368
Merged-chr4-129032862-4	chr4	129032371	129033371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25400.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	9.03653647001205	8.91860658221526	8.60350826073539	8.74819024216314	9.23265030668725	8.8718289401291	0.140114250603406	0.56504496111706	0.866552670637515
Merged-chr11-96413989-1	chr11	96413489	96414489	+	1000.0	f0_balb.idr	Intergenic	Intergenic	48231.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	3.94119418362578	3.85790875039802	4.09221142921613	3.30608039401917	3.32725040360103	3.52481377604808	-2.10778431988079	0.00037876365321523	0.00842903612108393
Merged-chr12-3869354-2	chr12	3868854	3869854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-7110.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.66842654894425	6.00656881401702	5.67546621117261	5.42038972095218	5.36024669805015	5.48397513533925	-0.71604778125586	0.0307985370720918	0.21228335592235
Merged-chr13-37514415-2	chr13	37513915	37514915	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	169070.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.17651432551068	2.84770779843619	2.74017947874322	2.86005629700388	2.92429531822783	3.12254224885473	0.143066496881566	0.846429479500353	0.964017504522256
Merged-chr5-99571165-4	chr5	99570665	99571665	+	985.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157895.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.84122885591253	4.45213037990749	4.08797880647579	4.56480817385985	4.12617674625669	4.31231648784274	-0.402552253413816	0.433340958348937	0.797793107392544
Merged-chr3-118508113-2	chr3	118507613	118508613	+	598.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54067.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	4.18129461903118	4.37929889708677	4.07500023144119	4.23028097729232	4.47572910915215	3.98811256162972	0.0949795666039336	0.849175872264468	0.964608463945227
Merged-chr1-45889200-2	chr1	45888700	45889700	+	860.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36394.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.30365944905554	5.67944056253184	5.4105541104393	5.23614392277435	5.23932092380089	5.2545116674135	-0.466868676647569	0.183375607312697	0.566491618839527
Merged-chr2-32963662-2	chr2	32963162	32964162	+	761.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_002898)	TTS (NR_002898)	361.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	4.67414188378883	4.80829646434172	4.56646275905188	4.77461366083736	4.86357370192648	4.83522381665748	0.301813653589347	0.449901774105467	0.808013574003465
Merged-chr3-105709707-4	chr3	105709208	105710208	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4250.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	4.48831833404887	4.17486168298006	4.12287356679172	4.00976444696739	3.8172801627653	3.88782092831354	-1.08574472290613	0.0311655100002491	0.213838521984063
Merged-chr7-90137769-3	chr7	90137232	90138232	+	629.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B3A|SINE|B2	7519.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.27648973963087	6.35218194729409	6.02262636682285	6.35845000336518	6.35697658787665	6.34249080294663	0.194067541339824	0.490504240440619	0.830053405840466
Merged-chr4-53154988-4	chr4	53154484	53155484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4911.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.78466180968543	7.74454983526304	7.58512693373972	7.47660336102189	7.59151046322384	7.45008849501317	-0.292041153136737	0.192805907652446	0.579818351365958
Merged-chr2-104589798-2	chr2	104589299	104590299	+	696.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-685.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	4.67209885561889	4.76373198313167	4.91800674619931	5.08460061726905	5.03955140581538	5.1519472873964	0.67746852974712	0.0738521068041576	0.357230909368698
Merged-chr14-17912332-2	chr14	17911832	17912832	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-69312.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.37720555700146	3.75590147322121	3.48594647463953	3.78203321389065	3.41469222737402	3.55810433629151	0.133359010758105	0.824514807054909	0.958596193929081
Merged-chr3-152210386-4	chr3	152209888	152210888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	-34.0	NM_001355369	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	9.47369168946333	9.63208377490883	9.14223368914843	9.23843777574958	9.25628720029823	8.96702602239067	-0.369481983164988	0.105876969663237	0.434365984209575
Merged-chr5-130000946-4	chr5	130000461	130001461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	2088.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	8.02463693272018	7.87661464649257	7.74950196243928	7.71811246913749	7.85841164718473	7.46498062375301	-0.276932630582096	0.2457144021801	0.642815945941074
Merged-chr8-111550389-4	chr8	111549935	111550935	+	954.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	12092.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.25806965863787	4.39994439519334	4.47165264675116	3.95896446591517	4.05278522534617	3.89357733998106	-1.12389432562008	0.0206027055320721	0.164584285897913
Merged-chr7-97765409-4	chr7	97764929	97765929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23112.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.57648343561303	5.58542016361147	5.385237048909	5.42051699594767	5.46670343129904	5.4178988240897	-0.171128075211959	0.603145499451213	0.882544198306255
Merged-chr6-120151201-2	chr6	120150701	120151701	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-42622.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.06422505822998	6.22077019180825	5.57565446356057	5.57112615285875	5.29757835964337	5.31836346594719	-1.08497684256517	0.00218848757207966	0.0330617405840424
Merged-chr15-97725740-2	chr15	97725240	97726240	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168693, intron 2 of 9)	intron (NM_001168693, intron 2 of 9)	-4590.0	NM_008902	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	3.35976120212244	3.14182301863808	3.35434715045057	2.99947197847715	3.05147128698711	3.20442193436879	-0.874759023171946	0.179241031634412	0.560780311857825
Merged-chr14-31662192-4	chr14	31661702	31662702	+	865.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025295, exon 2 of 4)	exon (NM_025295, exon 2 of 4)	21145.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	4.6879355273254	4.6091603026679	4.91368383619299	4.63430310523453	4.50932474188915	4.52167414534663	-0.425700362209586	0.307422652609818	0.703580177816035
Merged-chr7-45635405-4	chr7	45634916	45635916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152217)	TTS (NR_152217)	3342.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	5.52736954087349	5.44669855945161	5.58315109309127	5.53816414158853	5.48846490464203	5.56267124713776	0.0212679931279058	0.947403958310504	0.988008807662239
Merged-chr3-84827949-4	chr3	84827452	84828452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	12375.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.58575839694579	5.86997610844446	5.52377590523764	5.60454677229506	5.74555871267732	5.43369937341983	-0.121448173605411	0.718316335836265	0.927294055980264
Merged-chr5-54053645-5	chr5	54053193	54054193	+	997.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	55170.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.05128602460785	5.5320002675685	5.36069996586997	5.26006180355941	5.32643799233031	5.36334071597812	-0.0309683680812165	0.932102450732377	0.985043445444773
Merged-chr13-23563300-4	chr13	23562791	23563791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-926.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	7.80068488075178	7.82134482666142	7.84425883045252	7.89738015402323	8.13889545643133	8.03766537061447	0.298461382463098	0.16595606046866	0.541109862183596
Merged-chr13-51946366-4	chr13	51945874	51946874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99699.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.89839106768315	4.46599939351201	4.56670582606504	5.0053315891629	4.65745586790988	4.94533279275881	0.479606092489866	0.265721556615204	0.66350545993919
Merged-chr2-126713153-4	chr2	126712662	126713662	+	823.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5834.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	5.90896000984993	5.98857811156313	5.91206940994475	6.07435672105504	6.17979570853324	5.87400133954985	0.20940804723553	0.480879459540957	0.82484061161583
Merged-chr1-152809572-2	chr1	152809072	152810072	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	9419.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.17072898530064	7.10883521041336	7.04126712828335	7.2215791249183	7.666342682508	7.61533874568247	0.6036243760503	0.016855599685353	0.144098812934017
Merged-chr6-29735551-4	chr6	29735065	29736065	+	805.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176996)	promoter-TSS (NM_176996)	68.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	4.53405583309623	4.25451042421586	4.04728994359074	4.351083458704	3.90005668077385	4.01414798993426	-0.545667699703442	0.290668624372649	0.688528906448015
Merged-chr1-132335156-4	chr1	132334659	132335659	+	974.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19034.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.25152070068953	4.61639654968542	5.07517689168213	4.60895113280676	4.07621026269211	4.43224834999125	-0.722360585819044	0.159856035718605	0.532321973758633
Merged-chr3-96277543-2	chr3	96277043	96278043	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7843.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	3.81044254713338	3.72854794922837	3.62174168501855	3.20501186310149	3.10326105154041	3.29924323041593	-2.1400542828047	0.000684711220431872	0.013456176483159
Merged-chr5-105148244-4	chr5	105147746	105148746	+	937.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8660.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	4.21518510557137	3.69620715033986	3.82191262594475	4.50457043402886	3.98855529499967	4.37624245878595	1.03408486608079	0.0609397962909722	0.319826046113062
Merged-chr18-67186430-4	chr18	67185938	67186938	+	916.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-18921.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	5.95043439181798	5.38822101698224	5.62133925094491	4.70036156685404	4.44695220531423	4.48895152371917	-2.41785580367737	5.74849453508778e-09	5.51060752621641e-07
Merged-chr6-128891221-4	chr6	128890729	128891729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254946)	promoter-TSS (NM_001254946)	-105.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	6.46162533996326	6.34136691908393	6.14680887163729	6.45065194349887	6.6676694837499	6.35409391007317	0.287580393246038	0.312039430640915	0.706880086573454
Merged-chr5-140835733-3	chr5	140835233	140836233	+	626.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-5302.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.2683742455494	3.05791941205894	3.64734232214638	3.17654672346765	2.87391573791207	3.42239791263839	-0.67915753497131	0.343928705086039	0.732645864957409
Merged-chr2-150921852-4	chr2	150921344	150922344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	12250.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	7.03789465214309	7.50209440195679	7.17885106234168	7.0812252646481	7.67972037549072	7.05417703735516	0.0879792294491404	0.769279318881414	0.943096029055944
Merged-chr7-56013508-4	chr7	56013041	56014041	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153578, intron 1 of 4)	MTD|LTR|ERVL-MaLR	6032.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	3.27015482835928	3.29723715277319	3.45449590442175	2.72714112923754	2.59788621425053	2.96969981353999	-3.23753780333425	0.00016018367893523	0.00418873776142131
Merged-chr2-28401876-4	chr2	28401377	28402377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46064.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	2.85595529042218	2.59536674065045	2.63747018832566	2.6962960980836	2.76797657615862	2.89689925805909	0.433526254797424	0.563697035408919	0.865992481769395
Merged-chr8-122463961-4	chr8	122463396	122464396	+	956.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	3.51659290365055	3.29265499665123	3.57881948833342	3.61979641377278	3.39917703308714	3.43234749413071	0.0856112599590425	0.88525994124461	0.973549591486895
Merged-chr4-128611082-4	chr4	128610577	128611577	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-979.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	5.98240830212666	6.03709219585206	5.95922738813676	5.40381145748575	5.58401645961094	5.26063428151045	-1.01720659854707	0.00175026916602663	0.0278836677707722
Merged-chr19-6976244-4	chr19	6975754	6976754	+	879.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	1206.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	4.34106244171994	4.25335626297412	4.51853023112629	4.07761239045357	4.05637967143392	4.20746071096068	-0.711002614664417	0.127601848581875	0.477534164648765
Merged-chr13-74591546-1	chr13	74591046	74592046	+	623.0	f1_balb.idr	Intergenic	Intergenic	-48307.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	2.32566018049444	2.53265767392654	2.60555946028002	2.86513649033587	2.51669032763642	2.92293953972927	1.61925729960845	0.0534567500449595	0.296475988651669
Merged-chr11-51936332-3	chr11	51935831	51936831	+	798.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31300.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	3.6626713811355	3.61476735937878	3.35071625670631	3.56113801496847	3.40021760075387	3.64718014946141	-0.0806281047067936	0.891099876627581	0.974741527770255
Merged-chr7-45150125-1	chr7	45149625	45150625	+	605.0	f1_c57bl6.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-4178.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	4.75401254111705	4.56224024008145	5.15428595540708	5.02246351110361	5.07493908477063	5.09038242625737	0.503737368848333	0.216514785878279	0.610030018672362
Merged-chr12-87442114-2	chr12	87441614	87442614	+	759.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013372)	TTS (NM_001013372)	1725.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	6.75236020553175	6.93063251454683	6.79033630629503	7.55303714166468	7.92392719044274	7.24045435196914	1.17089437352811	2.40327117724651e-05	0.000854578581693708
Merged-chr5-140741327-2	chr5	140740827	140741827	+	590.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173405, exon 3 of 8)	exon (NM_173405, exon 3 of 8)	17200.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	3.02142147711385	2.96745194390856	3.05889260096052	2.91014772095491	2.67898880573485	3.07360232882716	-0.600426868319718	0.401636128887476	0.777736537409103
Merged-chr12-102392288-6	chr12	102391815	102392815	+	887.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47498.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.20683692836567	4.0602267512161	4.4334308289912	4.0318492246158	4.25682243628796	4.37781703810403	-0.018206151906447	0.969920900919664	0.993257828310627
Merged-chr18-36379503-3	chr18	36378995	36379995	+	873.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	30871.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	2.81770542209918	2.83313758631834	2.85676494472544	2.82933632037807	2.66259415611762	3.10187882278455	0.171192429641315	0.814832118785437	0.956370078970016
Merged-chr10-8762112-3	chr10	8761605	8762605	+	848.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123965.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.99744441872996	7.95333866504017	7.59102501401914	8.13655599263036	8.30038621152097	7.70640098121358	0.303267093204325	0.251213959606568	0.648731936769727
Merged-chr8-95434001-2	chr8	95433501	95434501	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	868.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	4.67714889418276	4.92422463835563	4.61295977015463	4.76366527312534	4.66574896884444	4.50577746472508	-0.229597935069982	0.582707361775958	0.873826743013405
Merged-chr17-13895784-2	chr17	13895284	13896284	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 30 of 33)	intron (NR_151731, intron 30 of 33)	-52589.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	2.42270520344975	2.38563429933428	2.74275347250366	2.39865333234537	2.31196275102009	2.38618411125633	-0.977461828157282	0.243311857110019	1
Merged-chr11-121673280-4	chr11	121672806	121673806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178664)	promoter-TSS (NM_178664)	-155.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	6.61245820985827	6.78050635033126	6.81112725733419	6.90959053406756	6.73082729142783	6.71596822766645	0.0862152199380043	0.736502480459172	0.933162099179542
Merged-chr15-79433136-4	chr15	79432651	79433651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	8667.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	5.64884967950388	5.6273909227162	5.66703670173494	5.03287674587408	5.18352525069941	5.45846009788189	-0.817789588194084	0.0176751659850588	0.148816855055354
Merged-chr13-115900920-4	chr13	115900429	115901429	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	408759.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	5.4660394256252	5.77628352686787	5.82006857738075	5.50262636110987	5.69934754222481	5.62610363233929	-0.14200642634278	0.667025844351902	0.908475303551909
Merged-chr12-13563783-5	chr12	13563255	13564255	+	730.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	63891.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	3.48078545869808	3.65661225974075	3.88150123099718	3.23002598132501	3.18319118942503	3.56625581950246	-1.31148201192383	0.0366305184330742	0.235526789102792
Merged-chr15-81845867-4	chr15	81845330	81846330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12496.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	7.18124397363534	7.25083069456409	7.32234235243257	7.05432452505072	7.39066022864665	7.44254125145283	0.0836357458208136	0.735243417804	0.932621944398232
Merged-chr11-57645310-4	chr11	57644815	57645815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-127.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	6.2782253946086	6.35529786386898	6.44064686211824	6.24655721333453	6.31489592052675	6.23164852747699	-0.144362598144333	0.595784098453884	0.879673556279846
Merged-chr19-6374055-2	chr19	6373555	6374555	+	738.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011750, exon 10 of 13)	exon (NM_011750, exon 10 of 13)	-10353.0	NM_011224	19309.0	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	2.04807500777467	2.13432388501567	1.99801689921295	2.22477641824364	2.12625092407445	2.53370368860403	1.71015099840192	0.0743944899935795	1
Merged-chr11-75513502-4	chr11	75513005	75514005	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-36.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	5.4121538360448	5.25916593243806	5.62309005624968	5.4315353476234	5.53209054955298	5.73498001876998	0.260790305360986	0.446641122265873	0.806100108763013
Merged-chr4-149709091-3	chr4	149708596	149709596	+	901.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7467.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.58513657173619	4.83292975141076	4.88982741256583	4.90457371974048	4.77507706173452	4.64603186409589	0.0292183209041133	0.94272386326102	0.987202156853573
Merged-chr3-9028118-4	chr3	9027624	9028624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23401.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.95231967114595	6.48452917741598	6.5958399464499	6.71794224318588	6.71998349397293	6.41598618647976	-0.101783470201784	0.724622080606414	0.929435720851808
Merged-chr1-55553576-4	chr1	55553066	55554066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	147620.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.74764824453003	5.98487780320823	5.43654694009314	4.95748865544185	5.07816664544612	5.20908142024448	-1.31316247175451	0.000290728386610602	0.00678948290572411
Merged-chr15-103258437-4	chr15	103257966	103258966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302341)	promoter-TSS (NM_001302341)	-63.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	4.67213720909696	4.55956972449083	4.26300306831867	4.5196152692526	4.59974784777811	4.38103031196559	-0.0245797404984105	0.956097316423436	0.989807313282509
Merged-chr4-55816017-4	chr4	55815523	55816523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-283548.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.57860654406591	3.37923806879437	3.45624280049521	3.90021610357745	3.59153609831845	3.69417741194941	0.905571519347998	0.114568421697656	0.452032914562748
Merged-chr14-63438194-4	chr14	63437740	63438740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177628, intron 1 of 3)	ID_B1|SINE|B4	1846.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	8.34545995142095	8.65943309710311	8.10590031140845	8.28820831712856	8.61982562491591	8.1815960365316	-0.0191658103914963	0.940530367798591	0.986852666940686
Merged-chr4-132540407-2	chr4	132539907	132540907	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	4848.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	3.76508196777189	3.73947548603641	4.11976482252898	3.57303926707724	3.63052181036761	3.5005719961975	-1.0179399726485	0.0728220069139757	0.354577421224068
Merged-chr13-113509553-4	chr13	113509069	113510069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6725.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	7.03985819052101	6.67946045957634	6.20537301691931	6.47168215411019	6.7860533603482	6.10002324731271	-0.319045284057933	0.365265636915887	0.750422106947654
Merged-chr18-4366808-2	chr18	4366308	4367308	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8784.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	5.99642182207649	6.31691991507432	5.94383046054272	5.75709809985409	5.9098606788104	6.11732985681994	-0.302457114676972	0.336038684903572	0.726090328603253
Merged-chr19-29382995-4	chr19	29382495	29383495	+	877.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	15557.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.07962207147909	5.68491551085195	5.86276439231692	6.58523760871251	6.58624296312607	6.51356363178103	1.13012388691971	0.000112627465252512	0.00313009556737842
Merged-chr11-117946766-4	chr11	117946269	117947269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22597.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	6.85723323457532	6.60362894561382	6.64256615343205	6.77969917765303	6.79619432199276	6.91413764751469	0.18526397474265	0.47127628630048	0.819917078029108
Merged-chr9-58559782-3	chr9	58559268	58560268	+	908.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18828.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.65255193434439	4.86812199526641	4.52869586671918	4.08415869729396	4.22093941798149	4.23591026059536	-1.32903299406029	0.00335293407153177	0.0457100045680184
Merged-chr17-23673644-4	chr17	23673163	23674163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181821)	promoter-TSS (NM_181821)	55.0	NM_181821	353502.0	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	6.97307588446136	7.31487139429321	7.03077301298672	7.18381864332989	7.25320360730372	6.99262635863141	0.0515691642756645	0.840112456592632	0.962819298477451
Merged-chr7-6383295-4	chr7	6382783	6383783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175247)	promoter-TSS (NM_175247)	-35.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	4.05982325875137	4.03005620889968	3.60585797781251	3.81791561423931	3.38902525542646	3.89348920325093	-0.656963047630423	0.271700456400599	0.66910298260273
Merged-chr17-88040961-3	chr17	88040488	88041488	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	23944.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	4.43690661965435	4.48583984011381	4.63832801602604	4.49553376840407	4.1302325033941	4.03151717334414	-0.728612716583733	0.124878253150937	0.472806556317204
Merged-chr11-44468554-4	chr11	44468066	44469066	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	1982.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	4.14367521796214	3.93663666690912	3.93607085429803	4.32521154785138	4.01709236173686	3.78936707409317	0.162386797261693	0.757169809471271	0.939819795914786
Merged-chr3-27711306-4	chr3	27710808	27711808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-856.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	7.87719978349203	7.99567683787749	7.61576409403501	7.68496705921435	7.55484119149278	7.63438331603494	-0.320218758839981	0.167222666653264	0.542868543829143
Merged-chr12-73659937-4	chr12	73659426	73660426	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75130.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.20267767902342	5.16272729231205	5.26320437817199	4.7094706018038	4.53721649740636	4.69635980271924	-1.25554721638364	0.00108277836665673	0.0191611702111385
Merged-chr8-70439691-4	chr8	70439182	70440182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004062)	promoter-TSS (NM_001004062)	-109.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	4.53457505509158	4.45996826539309	4.92479146505206	4.57797746900903	4.00705263729569	4.51824032416726	-0.649536191278035	0.185771349830651	0.570056884374864
Merged-chr16-58481374-4	chr16	58480855	58481855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	42071.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.67971828390188	6.67199444922837	6.93926754054615	6.60917322851937	6.58898502176347	6.93081614886695	-0.0820234854000299	0.762387637468206	0.941561416958418
Merged-chr15-12119159-1	chr15	12118659	12119659	+	766.0	f0_balb.idr	intron (NM_001358823, intron 2 of 18)	intron (NM_001358823, intron 2 of 18)	1308.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	5.64099809751022	5.30955980479455	5.28927109828724	5.45575946678161	5.28277022651246	5.14858398273899	-0.242417069253278	0.499711897965515	0.834687375989398
Merged-chr17-74020706-4	chr17	74020201	74021201	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27215.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	3.58403737380481	3.6774824020373	3.54763388703048	3.61896428870625	3.66499025547283	3.32509751969088	-0.18650358426915	0.750410748433005	0.937550343416037
Merged-chr11-100935579-2	chr11	100935079	100936079	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	3961.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	2.84971252965322	3.04508322882233	3.08770429631252	3.22016853378135	3.15670690425219	3.43449431052558	1.20485455641007	0.0727914114587805	0.35446990120723
Merged-chr11-83631294-4	chr11	83630774	83631774	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18104.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	6.66391379681022	6.28076524781142	6.57537517530573	6.16525120223163	6.02990294161601	5.73579927638776	-0.86002620455996	0.00539316475828315	0.0645411265938767
Merged-chr19-29489776-2	chr19	29489276	29490276	+	757.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32211.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.98487127811474	3.3618795884018	3.61693947691554	3.6858416790341	3.63299164243803	3.68826583051578	-0.0584589776863572	0.922255176163	0.982542868764899
Merged-chr4-62496292-2	chr4	62495792	62496792	+	770.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138653, exon 6 of 7)	exon (NM_138653, exon 6 of 7)	5908.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	2.58030199088691	2.50258503425644	2.62318881548602	2.23171013701577	2.20927174206875	2.44758106899384	-1.8865628927479	0.033398226423413	1
Merged-chr12-110499390-1	chr12	110498890	110499890	+	552.0	f0_balb.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13651.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.93825368239544	4.80474554695002	5.19378627293888	4.80960541155348	4.80802875059831	4.61103317956576	-0.503650679727921	0.212775235841543	0.605368317852119
Merged-chr9-118702789-2	chr9	118702299	118703299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8893.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.04905954710045	4.19385357189927	4.70772368074373	3.93708211145033	3.94901516065542	4.40925651007257	-0.625623857617698	0.243504973580139	0.640742579269377
Merged-chr17-34120491-4	chr17	34119983	34120983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	-583.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	9.37453811326349	9.57093404342045	9.17151140868546	9.17845676481418	9.43304605279837	9.23651477622705	-0.131107507562968	0.544325989647735	0.85765692399006
Merged-chr15-78175769-2	chr15	78175269	78176269	+	723.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1661.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	2.6864099723693	2.646181284803	2.91419056596783	2.81306586625389	2.53570889543615	3.04266700827748	0.295953236610784	0.702810878619345	0.922000148631826
Merged-chr4-3784707-2	chr4	3784208	3785208	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	50947.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.47883856934823	2.54873604737823	3.03874271228263	2.48193450370481	2.55747929509758	2.52696140912157	-1.01954716292118	0.219402900105228	0.613629004468952
Merged-chr11-59558372-2	chr11	59557872	59558872	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 6 of 9)	intron (NR_153314, intron 6 of 9)	13366.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	4.07500294343827	3.78241840058447	4.18545444146803	3.56451144148483	3.81092660449502	4.44811869339897	-0.088740312144019	0.883019996439452	0.973347392063704
Merged-chr2-84794139-4	chr2	84793650	84794650	+	883.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-4678.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	3.64292252038847	3.50099869817396	3.37598936139423	3.87794441859104	3.79443456369096	3.73475096818267	0.981533830311043	0.0825970153391482	0.380172353882868
Merged-chr8-35393637-4	chr8	35393147	35394147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	17906.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.88595505931291	5.57435608426607	5.93347457690884	6.06433236255769	6.08391184537418	6.06220001335661	0.475620682070251	0.120096825637657	0.463412013896222
Merged-chr9-123936823-4	chr9	123936329	123937329	+	995.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.53226327481655	5.86255231410332	5.91695525544937	4.86427657259876	4.97803231242646	5.24248060393334	-1.4746795813873	5.06658858710305e-05	0.00160053418054545
Merged-chr10-68736776-2	chr10	68736276	68737276	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13030.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	6.68795445113649	6.96671303694264	6.25982258288742	6.98725943473977	7.29167849964565	6.84081111729938	0.58033159201824	0.0611931968814223	0.320796915307427
Merged-chr7-80076799-1	chr7	80076299	80077299	+	595.0	f1_balb.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-1542.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.27778138308101	4.51156922237177	4.81932584540333	4.60540078696777	4.41557127834162	4.94989908145153	0.287518711814521	0.537726487438777	0.854779024899439
Merged-chr12-98292484-4	chr12	98291982	98292982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23847.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	6.33567294358455	6.27101160685897	6.03678338649443	5.74411341760322	5.92707210833254	5.7500321184894	-0.718027428478135	0.0173860751261669	0.147182782824207
Merged-chr18-53158353-4	chr18	53157823	53158823	+	582.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17969.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.11569174475191	3.79582743640992	4.14577324070269	4.22340666233669	4.07296039419393	4.34380186706121	0.536038615377781	0.281936955252071	0.679908771156903
Merged-chr8-85841587-4	chr8	85841083	85842083	+	953.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028007)	promoter-TSS (NM_028007)	581.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	6.06184394297688	6.32870370180201	6.45766756375636	6.53688649348963	6.40928170308529	6.31129621800576	0.229789115244429	0.422974127790604	0.791716965100763
Merged-chr16-16571540-4	chr16	16571039	16572039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-11320.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	7.04612385039801	6.85666800814493	6.46813707322791	6.93443982264187	7.34634787555886	6.60474575806693	0.290212321114723	0.364672094560396	0.750028369485675
Merged-chr4-128727932-4	chr4	128727427	128728427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	CpG	356.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.92592307964009	7.82782772975321	7.71459801721657	8.13980061897638	8.15782980463646	7.90754647083012	0.353739756144766	0.110484851565172	0.444181452820932
Merged-chr11-5789410-4	chr11	5788912	5789912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	929.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	7.57581302930552	7.77897501700595	7.56173576830092	7.77569926919415	8.35851805485733	7.74149821392076	0.509505941012365	0.0586547749575187	0.313266781783832
Merged-chr5-67302113-4	chr5	67301582	67302582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4873.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	5.01386125650511	4.99037399372104	5.0146635444105	5.39862120033827	5.5140589283396	5.08063677802543	0.719159824258544	0.049699176183661	0.283613541724852
Merged-chr4-24568224-4	chr4	24567724	24568724	+	942.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	71773.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	3.47376735041214	3.40932807222168	3.34340189290703	3.19575414518586	3.37633224590362	3.46964716054719	-0.241994524755105	0.68911128024063	0.917301051148832
Merged-chr8-122473187-2	chr8	122472687	122473687	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2877.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	3.86296761921777	4.09126136587605	4.35791757517246	3.76889197234398	3.70770267965272	3.89891513572838	-0.989509232373726	0.062687016352461	0.325597576182484
Merged-chr3-79531869-4	chr3	79531330	79532330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	35849.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	6.96583085233605	6.88019174278988	6.72639484967713	6.8118807708845	7.07814650115856	6.66889147060041	0.0145723438336261	0.956514965330051	0.989887454023164
Merged-chr9-35026032-1	chr9	35025532	35026532	+	603.0	f1_balb.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-90696.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	1.73893145751897	1.78020140983436	1.93702737985206	1.55329485027529	1.57909015774182	1.74436668260299	-2.03733698816709	0.0754013434724531	1
Merged-chr9-78175504-4	chr9	78175010	78176010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	-404.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	7.15358342350532	7.34302734925936	6.90065076997354	7.31767695606654	7.55076922629297	7.14126856969471	0.300376424593546	0.259026976884285	0.656586751129823
Merged-chr7-142374688-2	chr7	142374191	142375191	+	754.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-945.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.11576051731598	4.12317542800128	4.13508184894189	4.96625829027695	5.08230007101486	4.96852819722344	2.20657703518119	3.70928052992486e-07	2.26942510539697e-05
Merged-chr5-65076306-4	chr5	65075807	65076807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-31261.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	3.94187793487237	3.92500941592039	3.73108898221342	3.71933595996934	3.71381641714763	3.85338876314754	-0.374956506963112	0.475613964784605	0.822063360316711
Merged-chr8-36250850-2	chr8	36250332	36251332	+	949.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1316.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	5.42532752442312	5.11885063015229	5.34252867017561	5.07927696927356	4.90432308936054	5.48959773352908	-0.271497407384015	0.485586318423456	0.827504186777075
Merged-chr15-81872397-4	chr15	81871924	81872924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-39.0	NM_080633	11429.0	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	8.08386787481205	8.12807293654914	8.09453330352505	8.34405978602265	8.50085376699169	8.0415114994198	0.301302679483881	0.18517202761019	0.569309565230147
Merged-chr9-65578113-6	chr9	65577592	65578592	+	995.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	1995.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.49019254022334	7.34264264271916	7.4214663670281	7.41696400800152	7.50824852907853	7.45770495645361	0.0642598573689769	0.774915512861317	0.944517829695789
Merged-chr16-33075192-3	chr16	33074690	33075690	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172823, intron 6 of 16)	MTEb|LTR|ERVL-MaLR	12669.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	3.51744367047184	3.62850405079397	3.66837945206151	3.44006653601422	3.60542485503453	3.68689892676099	-0.0860933583423382	0.878302531700187	0.971842464414451
Merged-chr4-132476439-4	chr4	132475970	132476970	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-12549.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	3.92416299825839	3.96543468524268	4.20347573889314	3.65615239432628	3.6038116678802	3.34416619660798	-1.59993682855908	0.00670712917947445	0.0757517903229745
Merged-chr4-133928937-6	chr4	133928421	133929421	+	981.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	39070.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	6.15124664202563	6.33638214917109	6.09938886214081	6.36186235090237	6.5828947669448	6.58462313708342	0.504446827583634	0.0715387712909756	0.350858143464767
Merged-chr10-125213246-3	chr10	125212743	125213743	+	871.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95573.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	3.7842933465442	3.73739428062294	3.71020208334279	3.9110380146799	3.51251296797798	4.07011973433441	0.313566628032783	0.57824714479618	0.87240568986712
Merged-chr10-128377075-5	chr10	128376600	128377600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-24.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	6.90730584828038	6.6582235268055	6.82878013808826	7.00363957705896	6.33378874511942	6.65416575659005	-0.172388629536896	0.565544803667819	0.866815789886591
Merged-chr1-138166255-2	chr1	138165755	138166755	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	8871.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.58351118121542	4.59296017096796	4.79211734201597	4.4979298126065	4.4134400562553	4.46469733927021	-0.480910510905506	0.254020634058587	0.651176835969899
Merged-chr5-122989272-4	chr5	122988759	122989759	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	-95.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	7.50949973931234	7.59131539064034	6.86563655877167	7.52805861879931	7.46719411413226	7.14329068512612	0.0338005019775826	0.908494502364577	0.979260451489756
Merged-chr1-34005813-4	chr1	34005310	34006310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6015.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.96090926498965	4.82749650921048	5.03590831220409	5.10667279735418	4.85629200717402	4.63852649054547	-0.112574111412722	0.779088108830764	0.945710994231145
Merged-chr7-43354123-2	chr7	43353623	43354623	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145581, intron 5 of 9)	ID_B1|SINE|B4	2782.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	4.23303062460104	4.45096389488644	4.52399677077671	4.72424982182561	4.3871851910544	4.23275983484507	0.16430010522807	0.72372465031606	0.929128417950564
Merged-chr10-95508988-4	chr10	95508498	95509498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6164.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	7.45932045751748	7.30470861042848	7.51752208670366	7.64166997744094	7.88327844638097	7.8236318607161	0.525979464735439	0.0216832496254322	0.170408964707863
Merged-chr9-124013435-4	chr9	124012921	124013921	+	802.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8550.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.75900818599776	7.11376970082457	6.5787280810926	6.5119385491353	6.90165050775646	6.80204919590336	-0.14699753884637	0.614384565457717	0.887435546271868
Merged-chr2-156392972-4	chr2	156392481	156393481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-2.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	6.37622288496068	6.32037228343863	6.30799590335895	6.51506265851358	6.83650859076363	6.55518486446322	0.509563606872615	0.0622023231929536	0.324050269736995
Merged-chr1-152800877-3	chr1	152800308	152801308	+	674.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	655.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.855481089302	7.97553921679297	7.60692935573852	7.76260571574792	8.26740337227758	7.78402266162548	0.20156560223711	0.440061010020581	0.801567033070239
Merged-chr15-73634935-2	chr15	73634435	73635435	+	862.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10191.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.08704951765383	4.10139301443627	4.68915466747421	4.0279277823063	3.96097209323327	4.50383407536266	-0.364989704792005	0.497155410111581	0.833463771373168
Merged-chr17-47526791-3	chr17	47526295	47527295	+	621.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	21744.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.18329174295017	4.11813906523277	3.98649930510133	4.0701902182722	3.99974268917894	3.7906176908957	-0.405071965086852	0.420064082679331	0.789438387352498
Merged-chr2-48844340-4	chr2	48843815	48844815	+	829.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	30206.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	2.60038922627057	2.8321197747266	2.6062291855417	2.66706472684111	2.55288128799581	2.9821397336427	0.287715877590583	0.714111970357539	0.925744380854237
Merged-chr16-22108339-4	chr16	22107863	22108863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	54936.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	4.04955677213851	3.88425720320636	3.7389829125716	4.3192091252167	4.00478067980757	3.86776218383682	0.526327531722195	0.321016873426539	0.714680187400013
Merged-chr3-79174219-4	chr3	79173729	79174729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28354.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.51518090207033	7.39824013048242	7.54757530174177	7.55284804424145	7.80419904070235	7.30509247775908	0.138038061510018	0.579086157259442	0.872437416842052
Merged-chr6-113494607-4	chr6	113494047	113495047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	7271.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	6.9084814328551	6.87735801430105	6.70145204954695	6.82209420416988	6.89115197805087	6.79203767782528	0.00037609205941079	0.998796801182664	0.999777890446572
Merged-chr14-121421682-4	chr14	121421179	121422179	+	868.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42449.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.43920780617903	4.74875958461529	4.99331925684946	4.26500036856569	4.74651471020241	4.82148787415349	-0.248958619436912	0.59459058614453	0.879143746746643
Merged-chr5-107986654-1	chr5	107986154	107987154	+	1000.0	f0_c57.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	423.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	6.80953653544654	6.69235104651412	6.73320470306535	6.73196670779082	6.44061333549228	6.86548199015128	-0.103502871156114	0.701711408218554	0.921463870335944
Merged-chr7-92985083-7	chr7	92984567	92985567	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94812.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	6.51219196049412	6.68229223978754	6.31135875899989	6.53627685223006	6.59235976758386	6.61199621896628	0.0936215784076085	0.730051716854525	0.930736680834301
Merged-chr8-120490010-2	chr8	120489510	120490510	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	1144.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.45079585833517	5.45495857711103	5.28465665365382	5.70991348547423	5.58693115398832	5.31601068146578	0.288097141408519	0.399242691073177	0.775732166926525
Merged-chr9-100446219-4	chr9	100445733	100446733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40240.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.04855575288859	4.46055335082411	4.24734378101843	4.36041745760464	4.10569105938196	3.97066496436061	-0.292566090133168	0.558092349622341	0.864488862508624
Merged-chr2-35496732-3	chr2	35496230	35497230	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35281.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	6.7475990605736	6.8339923275484	6.53419993288541	6.36020122766825	6.35465060350968	6.38996375730915	-0.565832833900588	0.0334130598534463	0.22311074632132
Merged-chr15-57762118-2	chr15	57761618	57762618	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67451.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.53166888270515	4.54818497720615	4.4277770923374	5.21430778109157	5.06953725916144	5.27979934546144	1.51861189504484	0.000139219706985092	0.00373924899251632
Merged-chr12-85698585-3	chr12	85698086	85699086	+	734.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	11866.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	5.97271078911794	5.86336552506225	5.70581987174897	5.66988043355797	5.71743000752015	5.68668028259899	-0.301042397848285	0.330250564977867	0.721789606895393
Merged-chr2-132263072-4	chr2	132262583	132263583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-65.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	7.09997738387594	6.99866293726821	6.94442036195254	7.07701550767068	7.02210620742329	6.63993880421758	-0.123561122541725	0.637299123180273	0.897338937840938
Merged-chr13-43266559-1	chr13	43266059	43267059	+	712.0	f0_balb.idr	intron (NM_001033399, intron 1 of 1)	L1_Mur3|LINE|L1	37613.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	2.21172465112344	2.25158471099843	2.49811907373716	2.03208733471938	2.10855633521136	2.57169607134981	-0.424986014058779	0.659280640871796	1
Merged-chr10-34194228-2	chr10	34193728	34194728	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	B1F2|SINE|Alu	13323.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.70083681615376	6.34983860249238	6.44599913211752	6.79427156898688	6.53055958331799	6.95661033174993	0.401110461127329	0.161219851349135	0.533942898863986
Merged-chr4-141721187-2	chr4	141720620	141721620	+	738.0	f0_balb.idr|f1_balb.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	2299.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	5.74180033389924	5.48459899859337	5.80026462747478	6.37457441389628	6.35038261406336	6.05622284297163	1.04632641527436	0.000692959813374243	0.0135733992823079
Merged-chr2-124620661-4	chr2	124620147	124621147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	10351.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.09999965628476	7.12632931488261	6.81129971579237	6.64916950722782	6.98173024410795	6.58640193947812	-0.406540504534108	0.138340085888825	0.497020805986067
Merged-chr19-29641675-3	chr19	29641170	29642170	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	6745.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	6.159155115308	6.42864018306462	6.16513907565261	6.32394957156595	6.60431749112176	6.40779370438636	0.317563704274812	0.267359518038908	0.664656803764822
Merged-chr4-95209558-4	chr4	95209044	95210044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157322.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.17509821200538	3.69232576935521	3.815546689703	3.57056353146087	3.33261752717641	3.73180849174268	-1.24231031012206	0.036225366121023	0.234153896366385
Merged-chr13-5779593-4	chr13	5779083	5780083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78509.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.995978105169	7.37629255282367	6.16411281990528	6.65834067485805	7.09148624953881	6.43011701362108	-0.281794847506085	0.645961871448814	0.900808678472631
Merged-chr2-58921261-4	chr2	58920795	58921795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	166111.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	7.95538650394849	7.9738564106597	7.73757167181964	7.85188927160513	8.22339716806726	7.37057532113052	-0.0309762961592224	0.913518835210507	0.980699737319965
Merged-chr11-46266083-2	chr11	46265583	46266583	+	703.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 12 of 30)	L1MB7|LINE|L1	30526.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	5.32614220736352	5.77213517957649	5.08026456523276	5.08587457367178	5.30247432256344	5.14635072067462	-0.499851607751699	0.201996652677104	0.591717566483242
Merged-chr8-83169941-4	chr8	83169466	83170466	+	915.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	4614.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.91044486136705	4.52211603649513	4.54132118239737	4.57870289635446	4.66767378391446	4.65048823211207	-0.103806455883667	0.80772932889238	0.954558605173196
Merged-chr11-80159025-3	chr11	80158478	80159478	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	4816.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.09122032739708	5.40853215505806	5.89084886180355	5.4609686788367	5.70790427079398	5.56068373125408	0.169752111308149	0.658879602126158	0.905105559230557
Merged-chr13-62971056-4	chr13	62970541	62971541	+	927.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 1 of 15)	intron (NM_001289926, intron 1 of 15)	6148.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.64124881400606	4.76018336153694	4.44608269803531	4.53081928438645	4.58230794318564	4.42358683975598	-0.271163416592224	0.526034424538935	0.849279136234443
Merged-chr17-33717582-3	chr17	33717074	33718074	+	661.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252480, intron 1 of 4)	MIRb|SINE|MIR	1103.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	3.50892992057777	3.24554860363846	3.37735667936354	3.80385020977174	3.29420064766816	3.76885685778864	0.921918912690237	0.141583399174484	0.502269989808757
Merged-chr13-38010264-4	chr13	38009775	38010775	+	951.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027724, intron 11 of 12)	intron (NM_027724, intron 11 of 12)	-16067.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.13416401898744	3.02394341207868	3.19749369072503	3.36073579800681	3.50948064841997	3.38425075062314	1.2748085979529	0.0422858232887822	0.257653689529364
Merged-chr7-45361574-4	chr7	45361063	45362063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029741, intron 2 of 29)	CpG	-4598.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	2.77803942633627	2.80824052835774	2.83139879978046	2.50166194335203	2.72101688348778	2.45433483102656	-1.29753004809987	0.115895072527146	1
Merged-chr7-118483216-4	chr7	118482666	118483666	+	695.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8809.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.21499443443834	7.41835148253965	7.231106817781	7.13732512305283	7.53484979162063	7.27681886096498	0.0588261287991627	0.814890465447472	0.956370078970016
Merged-chr3-97229409-2	chr3	97228909	97229909	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2045.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	4.87829348065547	4.83326820356998	5.01849860475764	5.19788696993077	5.34456071711894	5.39922960072422	0.858391708513127	0.017808867988045	0.149575076970753
Merged-chr6-126836880-4	chr6	126836426	126837426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025358, intron 5 of 10)	RMER6BA|LTR|ERVK	12218.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	5.68741453577005	5.9403110982483	5.79101162804955	6.01888030984915	5.84835985968394	6.06412044215062	0.283460592547329	0.355495247715449	0.74242446189651
Merged-chr16-35047462-4	chr16	35046967	35047967	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 2 of 6)	intron (NM_023587, intron 2 of 6)	25046.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	4.22309232084611	4.09693933294244	4.57744821442212	3.86495968206611	4.1332913373107	4.41472278288126	-0.424491444046062	0.410917607607503	0.783744379356464
Merged-chr5-29947491-4	chr5	29946989	29947989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65625.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	6.68761609053209	6.47856024701731	6.50473508254423	6.6187575483964	6.75869398525758	6.50982631017846	0.12435181711415	0.640924748689769	0.898674931988243
Merged-chr10-77627712-4	chr10	77627215	77628215	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	5394.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	3.75190743787895	3.9508435507725	3.92971711791735	3.88195426340626	3.81515240572679	4.34609282728854	0.439159084810694	0.413795401586872	0.785367083470648
Merged-chr7-110625880-7	chr7	110625379	110626379	+	943.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1778.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	5.53279781185001	5.53285976744541	5.47603990653194	5.87072031816167	5.5992288202446	5.53945136228793	0.306233539152514	0.348919124335773	0.736874682683527
Merged-chr18-47330392-3	chr18	47329895	47330895	+	957.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	38473.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	3.66338830325957	3.95294833896214	3.52357073433143	3.48363284972332	3.24705336350873	3.36146484071488	-1.35317947422108	0.0262863973123073	0.192504712864149
Merged-chr1-152692878-3	chr1	152692383	152693383	+	897.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	URR1A|DNA|hAT-Charlie	-57668.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	4.8008146703496	4.55573472894386	4.43020393081069	4.74085493668695	4.50593314137968	4.6283996232493	0.0290331469983521	0.94613079320845	0.98796006280508
Merged-chr7-48996715-2	chr7	48996215	48997215	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	37642.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	2.40377365220515	2.44126448188471	2.63545569365174	2.40467778666465	2.36491924033856	2.82471220946427	0.282168945395704	0.734809096037503	1
Merged-chr15-81802574-4	chr15	81802071	81803071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	42.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	6.34847241185001	6.30907993520806	6.37685877153239	6.2319562207961	6.30707538990336	5.88508825338708	-0.291216226296662	0.319410709234715	0.713439259696738
Merged-chr2-124664765-2	chr2	124664265	124665265	+	961.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	11184.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.28448478419646	3.32920248428544	3.91399035948574	3.63675177562375	3.31622497838815	3.75354112534946	0.148095494599607	0.819385641246151	0.957280621673215
Merged-chr13-37742391-4	chr13	37741847	37742847	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83691.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.54105375458185	4.689605689057	4.48080202575888	4.83812912086709	4.61232110324623	4.54895683954767	0.227797372596694	0.588793561797999	0.876650937479947
Merged-chr14-73383610-3	chr14	73383090	73384090	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	PB1D10|SINE|Alu	1699.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.69531458992395	8.11748635850658	7.48129128108394	8.08021497778411	8.53989193355011	7.50506438061275	0.455588036216154	0.164641118817678	0.539208350811795
Merged-chr19-47731633-4	chr19	47731130	47732130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-126.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	7.80557599751586	8.05741806686336	7.94800483896258	7.60391442710805	7.60687309991515	7.73999835202212	-0.423226781214216	0.0569248420203008	0.307580335243874
Merged-chr16-89864886-4	chr16	89864357	89865357	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 8 of 27)	intron (NM_009384, intron 8 of 27)	-46505.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	2.76871053248182	2.75533787757075	2.92015384297606	2.82237573279046	2.70234308651287	2.7514154860083	-0.283653658708868	0.693412768414388	0.918953933419669
Merged-chr7-100434027-4	chr7	100433539	100434539	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38952.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	7.20875236484908	6.69019733115756	6.8599093225655	6.76409763863859	7.22516043667667	7.0433983609677	0.133452614262186	0.644680984178729	0.900287351502017
Merged-chr10-8858879-4	chr10	8858358	8859358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27212.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.95791931100594	7.94493984567127	7.42004319616558	7.84585461625962	7.92385306961837	7.42032282934067	-0.0713451206711196	0.79542666454747	0.951123944180176
Merged-chr6-97288490-2	chr6	97287990	97288990	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	intron (NM_145148, intron 23 of 23)	-35710.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.8862620011153	3.00112827586575	2.94407436284186	3.01952413277492	2.85357517820407	3.5044975045872	0.899136263766321	0.215103065093343	0.608433757360944
Merged-chr12-17724718-3	chr12	17724232	17725232	+	782.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	33923.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.04694005204103	4.3406515835132	4.83007036194314	5.11190893975009	5.18251991044875	5.22397886213333	1.70402544386281	0.00022218225348412	0.00545349290498721
Merged-chr9-118717114-2	chr9	118716614	118717614	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MTD|LTR|ERVL-MaLR	5422.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.65334176859704	3.29461088107547	3.82700943835261	3.26737098331133	3.25629602600774	3.60846375848681	-0.822503329712946	0.195638634922534	0.583395666913835
Merged-chr9-62360900-4	chr9	62360403	62361403	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	19560.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.73718058073204	3.64509741886929	3.76304852369582	3.79446102082931	3.69049021375146	3.67631662699594	0.0284879081456646	0.957427802570864	0.98996830630481
Merged-chr2-132289353-4	chr2	132288873	132289873	+	992.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291039, intron 1 of 12)	RLTR17|LTR|ERVK	3434.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	3.61456441057764	3.68406933181888	4.08246778736339	3.87262371488919	3.64654829416043	3.77606269313998	-0.110858007540694	0.842371672629555	0.963014702903935
Merged-chr7-99129235-2	chr7	99128735	99129735	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	11909.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.78414724236444	5.80938490258497	5.97703685192954	6.36665934590861	6.68590990066354	6.17441397563342	0.993023153981074	0.00114300154506236	0.0199972398152962
Merged-chr5-99244331-3	chr5	99243807	99244807	+	962.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 1 of 13)	B1_Mur3|SINE|Alu	8620.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.57786708926466	6.29481439671246	6.77947157298624	6.59181588397289	6.67706230270021	6.7026350859006	0.161472577452724	0.562368133506777	0.86571315867742
Merged-chr1-193160510-4	chr1	193160015	193161015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016851, intron 2 of 7)	intron (NM_016851, intron 2 of 7)	7403.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	3.79941753727729	3.97242783857333	3.83679726457211	3.84292967883317	3.91211904538933	3.95595496610739	0.0890343452875282	0.861307327942989	0.967789299492425
Merged-chr7-7281609-4	chr7	7281111	7282111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302386)	TTS (NM_001302386)	-3322.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	5.90458313504442	6.08924020232401	5.88107039839205	6.4008924220309	6.40481509119969	6.15562536269671	0.617456609573562	0.0338724178368219	0.225122602787791
Merged-chr15-37674875-1	chr15	37674375	37675375	+	555.0	f0_c57.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	5699.0	NM_001359840	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	2.38014562775925	2.42821488581715	2.49890034478199	2.65840632566689	2.59405245278005	2.93608782859567	1.7674466309498	0.0300110591959294	1
Merged-chr5-64241453-4	chr5	64240947	64241947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11090.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.42464779816184	7.39018684508416	7.16328642726585	7.03969471208933	7.38371738817364	7.28091517238231	-0.135497879790127	0.586255569172339	0.875449865187773
Merged-chr11-23682948-4	chr11	23682438	23683438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	16962.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	6.35407816616646	6.57877608167102	6.17655648638807	6.51342639567987	6.58510763190614	6.34305006453645	0.162841885172809	0.567841643570118	0.868387566222797
Merged-chr8-70619836-2	chr8	70619336	70620336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	IMPB_01|Satellite|Satellite	2992.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	5.87130078578005	6.067116669271	6.13338095954572	6.12700017535973	6.25746224042951	6.04006838824574	0.220246895374652	0.453027126965804	0.809576074493592
Merged-chr4-148583526-3	chr4	148583040	148584040	+	992.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7973.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	5.09690034438992	5.15292747653623	5.0182104322915	3.81886492288593	3.64938579723319	4.14710396212167	-3.52722689051056	2.94759735830049e-11	4.37190162191563e-09
Merged-chr7-145294880-2	chr7	145294380	145295380	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6029.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	3.12236863126453	2.85944696332221	3.29485287084003	3.15285209990712	2.94941463545784	2.90046756278874	-0.416352996377635	0.555142240228293	0.863184776736198
Merged-chr3-88685791-4	chr3	88685304	88686304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	17.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	8.46886912472116	8.54195876161705	8.34049739932504	8.0825434122749	8.62904541635333	8.46487043978099	-0.0551309088281961	0.817895277182624	0.956835450074313
Merged-chr17-47688100-4	chr17	47687592	47688592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290337)	TTS (NM_001290337)	294.0	NM_025365	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	7.94882017785296	8.27322715797311	7.69728297520146	7.82294436789974	8.1740954944872	7.60828804695594	-0.146520512799408	0.594987336885598	0.87924603206665
Merged-chr4-139288305-3	chr4	139287829	139288829	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009798, intron 8 of 8)	intron (NM_009798, intron 8 of 8)	22379.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.59688872037968	3.19138887547635	3.72985204926318	3.34928091982785	3.21964272854729	3.75122808249318	-0.244598407142966	0.709630244840635	0.92401439884764
Merged-chr5-72268411-2	chr5	72267911	72268911	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 14 of 22)	MER5B|DNA|hAT-Charlie	65068.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.85314580980104	3.93058363716994	4.58269358767762	3.68722790043332	4.01404337150382	4.05310988343625	-0.659580711034162	0.24946632817458	0.646365357085824
Merged-chr17-17392062-4	chr17	17391624	17392624	+	860.712524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025934, intron 9 of 9)	intron (NM_025934, intron 9 of 9)	-10562.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	5.89403140484944	6.11164758722598	6.1633881598975	6.26362507164635	6.50621862110796	6.24454315465361	0.495973568728804	0.0886071566352708	0.395156195160661
Merged-chr4-45940303-6	chr4	45939844	45940844	+	864.819458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198660, intron 30 of 37)	intron (NM_198660, intron 30 of 37)	-24991.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	2.95781496343986	3.03402890480583	3.10364054037177	3.00875116869773	3.02230693611282	3.33867975146736	0.419124737859901	0.531064954391807	0.851378188817981
Merged-chr1-97657356-4	chr1	97656857	97657857	+	803.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133825, intron 1 of 2)	MTC|LTR|ERVL-MaLR	4319.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.36543112021585	3.54598972606138	3.28243414986828	3.36420560325998	3.07656270620989	3.62435799031585	-0.145917475283804	0.822877590380891	0.958181862154646
Merged-chr7-118535636-4	chr7	118535116	118536116	+	908.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172476)	TTS (NM_172476)	-2260.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	5.54624975152512	5.44438240873942	5.80742222975584	6.29375778621517	6.47244087101868	5.67914987351809	1.06211013287796	0.00276454406620631	0.039585644925296
Merged-chr18-5805290-2	chr18	5804747	5805747	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	212600.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.20319292975012	3.94856771772736	4.4492756973256	4.04337436984351	3.85821100161114	3.99554860705819	-0.702613417970988	0.168756663315851	0.545438812408496
Merged-chr1-131560863-7	chr1	131560383	131561383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	32980.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	6.292982167718	5.85584179307962	6.3343732020522	5.7970456844195	5.63539973726494	6.20716154652131	-0.490359880955532	0.152128697144625	0.520041273243085
Merged-chr5-95918648-3	chr5	95918148	95919148	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38291.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.63346915829212	4.71766072667461	4.75752235186474	4.40742894115633	4.33940405007392	4.82220777813841	-0.424333937109669	0.331646029100703	0.72297130356206
Merged-chr12-101758847-4	chr12	101758370	101759370	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40347.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.47711836217793	4.43009585244606	4.38588313119253	4.81495171650414	4.9532177033754	4.63175619898619	0.914650718104849	0.0288978779859494	0.203950335839889
Merged-chr3-89282185-3	chr3	89281662	89282662	+	889.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1211.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	2.70123717321926	2.36619487157138	2.59897064503775	2.53396076667639	2.395811862294	2.67273974412425	-0.160766348503653	0.843833453772785	1
Merged-chr14-122533185-2	chr14	122532685	122533685	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 1 of 24)	B2_Mm1t|SINE|B2	-1143.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	2.99393889237636	3.08338688107298	3.12564662901904	3.02104592281497	2.9685245369307	3.02249083885022	-0.294368885355134	0.655590632029918	0.90429384180742
Merged-chr6-88065300-4	chr6	88064781	88065781	+	890.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19192.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	3.20735005493607	3.03791690586939	3.17021841973406	3.24030522670004	3.00731615531982	3.29820046765583	0.181682100595374	0.780444533503118	0.946056769087839
Merged-chr6-22358167-4	chr6	22357667	22358667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2086.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.60285189967931	6.65499641735968	6.27351751375448	6.7943416913604	7.06628433490993	6.53465156436542	0.467891901969085	0.111532663961949	0.44610871740816
Merged-chr13-34050675-4	chr13	34050167	34051167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	13026.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	6.52890827908841	6.73827351725832	6.38767001556632	5.42295905921296	5.39191032208343	5.62173241068733	-1.91177271876297	3.9093295245547e-10	4.58151395886123e-08
Merged-chr17-47054776-4	chr17	47054263	47055263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44231.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	6.73068003152017	7.06866750616899	6.43747425344946	6.90720062476228	7.07898701586029	6.2852001165719	0.0491071202231632	0.883988247164382	0.973466734537782
Merged-chr14-25459217-4	chr14	25458723	25459723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	38.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.08885689182449	7.17054767164532	6.89308961211274	6.7209313565901	6.68079350313799	6.84914768505897	-0.487717558510232	0.0523955089987391	0.292739899875201
Merged-chr3-146135593-4	chr3	146135102	146136102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134160, intron 8 of 11)	L2a|LINE|L2	13811.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	4.89359030172093	4.92611810167323	4.80097329117908	4.67759141454455	4.79846210876929	5.11007634228036	-0.0310872976035083	0.937947390242265	0.986216627099055
Merged-chr2-167748318-2	chr2	167747818	167748818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57141.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.90672032783551	3.53302309661513	4.00606316810678	4.00667495876095	3.56287345109613	3.72998002714678	-0.152298531202988	0.792147013799355	0.949928666249466
Merged-chr18-38434165-4	chr18	38433627	38434627	+	812.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	RMER6A|LTR|ERVK	15220.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.51083452347472	4.17642891552753	4.54878746726289	4.35016090005917	4.61964306323663	4.5749315507319	0.265484546445598	0.557348900857023	0.864206014246523
Merged-chr19-46707532-4	chr19	46707123	46708123	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020577, intron 1 of 10)	intron (NM_020577, intron 1 of 10)	180.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	6.09397454951632	6.14036221582906	6.01437247267284	5.58303797291867	5.75776186111575	5.61806416499121	-0.75469813664978	0.0127936422996444	0.119570188528452
Merged-chr17-29493811-2	chr17	29493311	29494311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008842, exon 5 of 6)	exon (NM_008842, exon 5 of 6)	2766.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.94281708883167	3.88996245118784	3.63540108454458	4.06070017993754	3.8584638306213	4.11770275895895	0.528804239793354	0.317390955461098	0.711302795223616
Merged-chr2-137807774-4	chr2	137807276	137808276	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-448808.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.24464790292881	4.1567181252755	4.01613337915877	3.76681707761243	3.87085518207312	3.9362339236392	-0.872368820397382	0.081936169584401	0.378679448943503
Merged-chr5-123063671-2	chr5	123063171	123064171	+	959.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-12604.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	2.4287717534394	2.39194168685768	2.74737611552639	2.45376913387752	2.3488736735064	2.32070295892699	-0.93178889974099	0.268951641551809	1
Merged-chr8-26964070-4	chr8	26963587	26964587	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-13249.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	6.24798018713347	6.32251474309428	6.42931492451253	6.05907611969164	5.88442952308152	5.5624739610126	-0.800639284332254	0.00996561935123158	0.100177385489014
Merged-chr15-6568653-1	chr15	6568153	6569153	+	771.0	f0_c57.idr	Intergenic	Intergenic	-11194.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.9846112552675	8.19410914766297	7.9965588589718	8.0649785491699	8.41734491790781	8.16593800811068	0.232367285796874	0.307411067533856	0.703580177816035
Merged-chr1-45903527-2	chr1	45903027	45904027	+	880.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	22067.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.38228332343398	5.6272366084197	5.61052082727009	5.08217295709121	5.43133540153146	5.12246618870605	-0.600557852327859	0.0957957997953744	0.412649682093602
Merged-chr15-73598661-2	chr15	73598161	73599161	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	ID4|SINE|ID	-2135.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.2867112693959	3.22866841623153	3.31291485739975	3.53582909083781	2.97125263454832	3.27040837480682	0.014817582210154	0.982284313847591	0.995992226862322
Merged-chr16-87702306-2	chr16	87701806	87702806	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	3352.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.20942250911045	3.12686426200076	3.53531718118701	3.29636485132976	3.14676039550461	3.3993090301319	-0.0586029016054075	0.927197007222419	0.983584626679457
Merged-chr8-4275933-4	chr8	4275440	4276440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011592)	promoter-TSS (NM_011592)	-35.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	7.12859085402439	7.24292874036628	7.08399113044047	7.48526062254326	7.28201518394672	7.1927314037908	0.255985776605703	0.287614402945146	0.684950238953412
Merged-chr4-12497980-2	chr4	12497480	12498480	+	954.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-325965.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	3.84577129771876	4.06589676136581	3.93248846475882	3.68374865423617	3.62073847445007	4.13731494004985	-0.402047697190068	0.465613863635647	0.817146354802119
Merged-chr9-94706997-1	chr9	94706497	94707497	+	591.0	f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	37105.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	2.90129187166229	3.00036163322981	3.12095860162317	2.82070342528792	2.77345054007287	3.13685827448853	-0.447759039163742	0.528045181609242	0.850349980091771
Merged-chr16-21629315-2	chr16	21628815	21629815	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	Lx9|LINE|L1	65350.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.15075580556958	4.06287900503757	3.94719007884879	3.56124065796405	3.44237355977057	4.23898484737693	-0.809804425479256	0.18412435658831	0.567763528958023
Merged-chr5-138622840-4	chr5	138622341	138623341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183025)	promoter-TSS (NM_183025)	-18.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	4.80660650170155	4.64528697859903	4.44747104364263	4.64010013229312	4.43529647617929	4.42494358555451	-0.353699826384681	0.413886351708357	0.785409951490352
Merged-chr5-136933431-3	chr5	136932918	136933918	+	742.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015555, intron 3 of 3)	(ACGTG)n|Simple_repeat|Simple_repeat	14272.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	3.85589770898542	3.61095816205028	4.23458780297662	4.3372133583879	4.57481044201171	4.06825820450624	1.22899349291138	0.0247166170982176	0.185682581754107
Merged-chr1-156939555-1	chr1	156939055	156940055	+	546.0	f1_balb.idr	promoter-TSS (NM_001159965)	promoter-TSS (NM_001159965)	71.0	NM_001159968	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	3.06959584258116	2.81586027958171	2.96229582488478	3.15319578034341	2.64574951520944	2.78304670761074	-0.346538078031732	0.649185613689242	0.902118776529041
Merged-chr8-125727496-3	chr8	125727003	125728003	+	714.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6700.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.74548893338891	5.98001312135153	6.28207797008687	6.17258912770955	6.35136946137151	6.62895435836287	0.641414325792626	0.0446544635811182	0.266348828157108
Merged-chr5-32196189-4	chr5	32195671	32196671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36537.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	5.75430903207728	5.4849730346711	5.89163124589972	5.79402801215774	5.83523534768894	5.73117085470734	0.14467522088483	0.652439484765731	0.902986290245403
Merged-chr16-97533963-3	chr16	97533463	97534463	+	701.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2118.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	4.06215142940581	3.88333438817121	3.88963368198789	3.37338917524739	3.27241838510888	3.29464659364371	-2.39183413287313	9.28900345362518e-05	0.00266585412406999
Merged-chr15-74988733-4	chr15	74988265	74989265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5335.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	7.4848445040858	7.78789368921168	7.39534835571348	8.3400323294537	8.71649348875983	7.79805881357158	1.10003460596975	0.000209991731254297	0.00520804529782638
Merged-chr5-64960097-4	chr5	64959597	64960597	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359180)	promoter-TSS (NM_001359180)	-1.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	8.21086803074369	8.69312764153983	8.04578365286565	8.54332280059706	9.02453417556256	8.42828867813348	0.476815920376158	0.0918180601698477	0.403613352560235
Merged-chr11-79869986-4	chr11	79869480	79870480	+	950.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92407.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	7.46074988574251	7.22214739252115	7.11616151823616	7.19621950759497	7.32596730798658	6.77830826887326	-0.218771902898664	0.425366043761107	0.793033043608125
Merged-chr16-19985522-4	chr16	19985019	19986019	+	936.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2470.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.02221680908153	4.45392187075959	4.31150189142655	4.70613800969381	4.49390290688378	4.59370731450434	0.816842817470522	0.0768090074779627	0.365129691660795
Merged-chr12-102441200-2	chr12	102440700	102441700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.11820589577975	5.9715646283808	6.02483064896562	6.69454197810586	6.54234769459871	6.40309122797088	0.853745806190656	0.00224798174587061	0.0337574562552612
Merged-chr11-70817048-1	chr11	70816548	70817548	+	570.0	f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4487.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	3.199299930903	3.43033263943755	3.244636379093	3.3866757257509	3.43862332507634	3.74122264311271	0.855716768389931	0.167260975021123	0.542887003025341
Merged-chr6-125364677-2	chr6	125364177	125365177	+	893.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_198604, exon 15 of 17)	exon (NM_198604, exon 15 of 17)	14954.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.61174089963407	2.60941843549414	2.68293963076672	2.76657926634291	2.8188959095188	2.81820859731837	0.915565755752119	0.211604465193524	1
Merged-chr11-117115056-4	chr11	117114502	117115502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029459)	promoter-TSS (NR_029459)	-170.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	8.00052037809524	7.95074053557454	7.73034876808591	7.96660841831012	8.02255446289899	7.96050005334726	0.113492630282142	0.602302059984387	0.882299035371658
Merged-chr9-83528445-1	chr9	83527945	83528945	+	666.0	f0_balb.idr	Intergenic	Intergenic	-19893.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.50051312080647	2.50280853019749	2.72537106622965	2.68910320265921	2.84931676064514	2.47565827263301	0.607624211688733	0.450627392926441	1
Merged-chr11-83541156-4	chr11	83540650	83541650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10632.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	6.13614024826811	6.42533147514332	6.43117163397188	6.08558159696818	6.38601675659594	6.26355928888465	-0.131192168614847	0.652726486492707	0.903005353518697
Merged-chr3-51365484-4	chr3	51364989	51365989	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-24845.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.43685784923967	3.32447989691948	3.44515419115416	3.55752484833101	3.39637900163596	3.46107314801458	0.267715994593707	0.646575884331279	0.90100465546023
Merged-chr11-50254976-3	chr11	50254457	50255457	+	688.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175334)	TTS (NM_175334)	-16425.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	4.00276136312518	3.794996723785	4.26010602995288	4.5061935668825	4.20123438185815	4.5327196193405	1.08540815024133	0.0297080826959861	0.207569917286725
Merged-chr15-100681127-1	chr15	100680627	100681627	+	948.0	f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	6793.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	4.43242449269968	4.26409680168672	3.99606131437652	4.55873825290752	4.54864975625424	4.77604616985381	0.941466435581161	0.0448771841735646	0.267125026161668
Merged-chr4-136147807-4	chr4	136147312	136148312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	3990.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.60944528400706	7.15992387221911	7.12044884309102	7.45399311059108	7.15281769184567	7.09946668276821	-0.112444717446881	0.681596485090192	0.914746456957817
Merged-chr6-17770743-4	chr6	17770258	17771258	+	983.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	21588.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.24711468073696	5.01998444413661	5.08555421309952	5.48029660043987	5.41279539238411	5.52581284033463	0.691655513650864	0.0465579727848737	0.273008865361788
Merged-chr1-131109700-2	chr1	131109198	131110198	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11855.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	5.28951365739125	5.13843112211553	5.43257663655196	5.01204950391582	5.32924636731181	5.22417310426506	-0.170457055470381	0.639659370355862	0.898199312621371
Merged-chr16-45005496-3	chr16	45004983	45005983	+	941.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61805.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	2.67558577946856	2.60301649925904	2.64188345042836	2.68294301598406	2.63691836154205	2.77673177627814	0.310329916286532	0.675344469564423	1
Merged-chr3-30793294-4	chr3	30792813	30793813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027016, exon 1 of 8)	5' UTR (NM_027016, exon 1 of 8)	437.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	8.9529052166853	9.29222353189815	8.55760225842013	8.86754886973569	8.76078235134461	8.47160545077792	-0.35881123457545	0.173839491521418	0.553140727918843
Merged-chr12-110707558-2	chr12	110707058	110708058	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11163.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	5.43968429603872	5.40646865298676	5.2610312190469	5.28329573511349	5.62718187268763	5.15284614036469	0.0206481162179601	0.954580990630828	0.989606357454991
Merged-chr3-89203440-2	chr3	89202940	89203940	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_122037, intron 2 of 11)	intron (NR_122037, intron 2 of 11)	515.0	NR_122037	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	6.54640443147882	6.79393581888381	6.53275149140506	6.47127480538295	6.85242151996162	6.25727857791742	-0.106959183102387	0.722323765728387	0.92872455507539
Merged-chr10-59879857-1	chr10	59879357	59880357	+	1000.0	f0_c57.idr	intron (NM_019965, intron 1 of 8)	CpG	266.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	7.68672117478166	7.80140277042357	7.8949388120036	7.83715719468865	7.95409812023306	7.83992962343737	0.124886644198477	0.56561711985316	0.866849673231203
Merged-chr9-124143031-4	chr9	124142568	124143568	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21525.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	7.03214877121697	6.81519003264008	6.64315875105551	6.8425612256137	7.32439092774217	6.99449779768441	0.352705045889778	0.208407022495376	0.599334054323469
Merged-chr18-60211995-4	chr18	60211464	60212464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-113.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	6.70341517347182	6.88766551669425	6.82219178833979	7.0532550386974	7.34963966711738	7.08933072586111	0.566475177510477	0.0251941197213962	0.187906015521742
Merged-chr11-51916235-4	chr11	51915752	51916752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51379.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	8.77619690408854	8.89666710086299	8.63885380472275	8.76645495649425	8.96935380867029	8.6230501352006	0.0292296496797401	0.892739087454418	0.975146620821922
Merged-chr17-26244747-4	chr17	26244213	26245213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-471.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.44940107678967	7.30485084276193	6.88468306146249	7.09797724487466	7.51889581793115	7.14062564175451	0.0455940582504413	0.871990556498325	0.970261003150518
Merged-chr9-15715129-2	chr9	15714629	15715629	+	682.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	5391.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	2.47858645741706	2.59613457904779	2.66206733773853	2.49233992281614	2.59229102077852	2.48332103247174	-0.30355901966612	0.698564485578987	1
Merged-chr5-3491392-4	chr5	3490854	3491854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-52479.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	7.15834968027812	7.19146474521633	7.22860774672691	6.78967975970914	6.79983683137201	7.05667931055472	-0.475070909172581	0.0522214998616175	0.292078144819888
Merged-chr11-116866424-3	chr11	116865940	116866940	+	976.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	12440.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	5.12070105499995	5.0678603037346	4.78226246888781	4.98133567239737	5.00968446001698	5.27026844556298	0.161251536739385	0.67539957064193	0.912152821313949
Merged-chr18-32348492-4	chr18	32347973	32348973	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40b|LTR|ERVL	-28744.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	5.28415308813799	4.9801322563847	4.80211896827363	4.96071768313469	4.75645484939802	5.21691753618605	-0.14455041334146	0.725266774959682	0.929616950952244
Merged-chr12-85451949-2	chr12	85451449	85452449	+	553.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21941.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.02168031215544	3.02780232061672	3.22850845120049	3.01774779816562	3.1443576648852	2.74964256133292	-0.475686706253639	0.514429486800668	0.843107848235413
Merged-chr5-140112069-3	chr5	140111580	140112580	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	L1MD|LINE|L1	62838.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	4.34405603363251	4.44914813892217	4.1717443102662	3.82785617756615	3.98482953985447	4.14648964163577	-0.980042859741702	0.0453704337426145	0.268906834593309
Merged-chr14-50875877-4	chr14	50875364	50876364	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5310.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	3.44370992801522	3.47242373942603	3.63485456454106	3.65218109984114	3.67912263476211	3.80462035908859	0.689822688003587	0.21435037202803	0.607461113576116
Merged-chr1-86402468-4	chr1	86401985	86402985	+	819.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13124.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	4.68241763052106	4.72800152636678	4.83889791190789	4.58287100479648	4.96023740803658	5.04146008200829	0.289696463992777	0.479543195023893	0.824315790843038
Merged-chr11-121741682-4	chr11	121741191	121742191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39264.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.73767077403086	7.74008166379768	7.5265006691627	7.21178937810093	7.41368711489298	7.11292607755096	-0.608924071327781	0.0109860048796457	0.107367100543288
Merged-chr4-70546075-4	chr4	70545585	70546585	+	980.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-11157.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	2.97641972943608	2.95533182015756	3.13036432143929	2.92680326020039	2.81451719539987	3.03132403181774	-0.46273524117581	0.499463354022046	0.834491521655083
Merged-chr9-64749507-4	chr9	64748999	64749999	+	793.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11743.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.13736622469317	3.87084697130407	4.09713450539984	3.83042101304383	4.00304320101269	3.59069635736492	-0.633503507605319	0.247866960208139	0.644959472918844
Merged-chr1-91458399-4	chr1	91457914	91458914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	914.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	5.33893522724533	5.43520948180725	5.0294301451468	5.76632627050864	5.51403154070434	5.31270705718004	0.498905537971385	0.173239833055854	0.551957215225209
Merged-chr17-67305010-4	chr17	67304509	67305509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	49450.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.67719371802096	6.5402453630742	6.44045500119266	7.2630862272226	7.44011576577039	7.10065668704263	1.10500198194168	1.91123947638896e-05	0.000701811184251425
Merged-chr1-184561498-3	chr1	184560991	184561991	+	779.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	2.97711701241992	2.83958876146282	3.00619611487916	2.71245679437585	2.61331239482658	2.7802863815814	-1.28357349944192	0.0815954758985892	0.377818383893701
Merged-chr13-96466456-2	chr13	96465956	96466956	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 1 of 13)	intron (NM_001042714, intron 1 of 13)	4704.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	3.7752784282709	4.11164808266738	4.24552613576248	3.77244989591866	3.60398461431758	3.8606115331346	-0.972564973271452	0.0735346906711868	0.35633769386571
Merged-chr6-128847244-2	chr6	128846744	128847744	+	770.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001254946)	TTS (NM_001254946)	-20929.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.83502269789275	3.182556669238	2.97098433450868	2.83554509759683	2.68435671830481	2.98436033539218	-0.840565448761241	0.250826284182649	0.648197271421781
Merged-chr18-24246067-4	chr18	24245567	24246567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013814, exon 4 of 13)	exon (NM_013814, exon 4 of 13)	40073.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	7.76858965785692	8.34991082318076	7.68066363581505	7.51774440519003	7.9321021769187	7.29954566829347	-0.509632599614956	0.0917565647687709	0.403406966146036
Merged-chr7-29006338-2	chr7	29005913	29006913	+	941.25	f0_balb.idr|f1_balb.idr	intron (NM_009109, intron 101 of 105)	MTEa|LTR|ERVL-MaLR	23559.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	4.14161748017249	4.07905387075692	4.39126558912875	3.87860802504635	3.79591282899798	4.02528064908272	-0.910907881758285	0.069881827095384	0.346155915522843
Merged-chr3-19894767-4	chr3	19894277	19895277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027985)	promoter-TSS (NR_027985)	-94.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	5.39454266382684	5.2282534470877	5.34606232906119	5.81099289207212	5.10627047357512	5.52781137372992	0.359964232618774	0.345201333961093	0.733666487940844
Merged-chr18-50095852-4	chr18	50095349	50096349	+	876.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-32352.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	7.2270862969396	7.82897608670772	7.4536523150773	7.53299726799898	8.05700125506165	7.66784721780751	0.355581256800106	0.211712248547895	0.604079033577025
Merged-chr1-55087136-2	chr1	55086636	55087636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 1 of 11)	intron (NM_001356512, intron 1 of 11)	796.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	8.06698582645437	8.2873970800983	7.87871171639623	7.72147338262828	7.90730533832038	7.4292339913723	-0.54655431344703	0.0309276412167716	0.212863271156768
Merged-chr12-4505527-4	chr12	4505025	4506025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18588.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	5.66408690026809	6.15845351234771	6.25778298669794	5.64801060373923	5.78176606019485	6.05990134499231	-0.37223265580283	0.277803585536722	0.675042512202188
Merged-chr3-20029424-2	chr3	20028924	20029924	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 2 of 16)	MTD|LTR|ERVL-MaLR	5886.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	5.5872099774327	5.62536642118944	6.03814972122478	5.78231380236684	5.79173347994377	6.15645831977693	0.287811404355481	0.393880993059574	0.77200630622486
Merged-chr12-33380247-4	chr12	33379728	33380728	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131031, intron 2 of 3)	B3|SINE|B2	14532.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	3.26762445579008	3.20067596879075	2.85260081982906	2.90248358279917	2.7186769472852	3.05305467523317	-1.08849457405826	0.141790469659266	0.502638933495778
Merged-chr14-72603607-2	chr14	72603107	72604107	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106396.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	8.39095609384086	8.50401797095961	8.2242399449014	8.52791533282547	9.0668768574816	8.36919828481885	0.440582250078581	0.0935747452885637	0.407439424697583
Merged-chr11-73199256-7	chr11	73198854	73199854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	-128.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	7.68708876174597	7.94439924562544	7.23788398521056	7.68320930252652	7.7233047227758	7.32008988093175	-0.103171165530065	0.715103948190767	0.926294336925095
Merged-chr2-27373646-4	chr2	27373158	27374158	+	964.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	MTC|LTR|ERVL-MaLR	53950.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.38648988806337	6.29340471991322	6.28095545946382	6.12724799873464	6.01729790103041	5.78356606212052	-0.558169369525658	0.0554580423091374	0.302812047014811
Merged-chr15-100421368-4	chr15	100420856	100421856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	1699.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	7.71381096893119	7.8257793907803	7.04991431280469	7.50645632696814	7.89216978188943	7.39019281929574	0.0560019355050857	0.85338677569693	0.965672676480491
Merged-chr7-4741219-4	chr7	4740693	4741693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358044, intron 1 of 8)	intron (NM_001358044, intron 1 of 8)	1066.0	NM_001358044	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	5.1643447293609	5.10316448880933	5.84701556543799	5.23187009922395	5.26809579830016	5.4708273599713	-0.158333030606259	0.693445095539467	0.918953933419669
Merged-chr10-121477611-3	chr10	121477110	121478110	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1360.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.93620441756808	6.30440873484399	6.4515903793117	4.96649579764977	4.9532498531185	5.5245708700361	-2.02036007236788	5.91934294813778e-08	4.46947992766468e-06
Merged-chr9-119075539-4	chr9	119075058	119076058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019676, intron 5 of 14)	intron (NM_019676, intron 5 of 14)	12703.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	7.18112796915383	7.42532067136808	7.24289808112632	7.40270785978355	7.61223115125538	7.15143066328494	0.181844556783635	0.475377285600625	0.821929811663097
Merged-chr9-78108595-4	chr9	78108092	78109092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	64.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	7.60418688049218	7.68714794279753	7.60143044777851	7.51785781757319	7.70081665610816	7.48001129914079	-0.0828569036396922	0.712501876413965	0.925141708918952
Merged-chr4-43383057-1	chr4	43382557	43383557	+	1000.0	f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1075.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	7.31108671610394	7.3487116392987	7.03222541680034	7.25822040551727	7.61061395579233	6.88339655995344	0.0814014377755259	0.778321954545984	0.945439632982223
Merged-chr2-25332623-4	chr2	25332128	25333128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	-57.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	7.89999705964405	8.00984048069427	7.70723927507636	7.85644616764394	8.07850739186026	7.65124747360804	-0.00170587745863388	0.994355523402683	0.998918571480046
Merged-chr11-40835824-4	chr11	40835345	40836345	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-80559.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	3.1680055852154	3.48139457259704	3.50914397602438	3.09828475282095	3.21909478725662	3.42290418656994	-0.571193193134367	0.373688549106007	0.757546812967132
Merged-chr7-88282018-2	chr7	88281518	88282518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	3933.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.23794313381463	6.2444822267548	6.04661453615054	6.92668475469151	7.09184061116981	6.53161838649905	1.11351596363186	0.000135625392821115	0.00366638001489907
Merged-chr15-74930966-4	chr15	74930473	74931473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-24078.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.53357448276037	6.7907563576862	6.83981636728767	7.41642629400901	7.70424769059243	7.15991778207926	1.10517027391106	4.88975686291732e-05	0.00155292705744132
Merged-chr8-69902430-3	chr8	69901929	69902929	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032004, exon 1 of 1)	exon (NM_032004, exon 1 of 1)	129.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	8.32949705834322	8.70517213649893	8.55199559716618	8.58094557063948	8.79322604840436	8.53379189486744	0.146027909914974	0.514106714442508	0.842928757124913
Merged-chr5-134185200-2	chr5	134184700	134185700	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	B1_Mur1|SINE|Alu	1162.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	5.0628256623795	5.3315492483681	4.99548885493592	5.12418540821856	4.97029931041122	5.32454687361763	-0.0202982516465585	0.957324198723755	0.989964080281727
Merged-chr18-20803210-4	chr18	20802714	20803714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-56810.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.10361831417176	5.10611566769448	5.12755298504128	5.01799947531842	4.89655773098017	5.12539167571986	-0.221035130122794	0.545281105070487	0.858059274547204
Merged-chr4-136143371-2	chr4	136142871	136143871	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-451.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.10396348950378	8.11981741204069	7.74451442229549	8.08302256054782	8.33864912114815	7.51021604467881	0.0389131702750673	0.892441666972144	0.97511964368335
Merged-chr13-47213200-2	chr13	47212700	47213700	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	19197.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	3.54330500939398	3.7491390067383	4.23843493564848	3.7247388435279	3.495326608076	3.87452036580451	-0.533960116640823	0.371885633450105	0.755841610252976
Merged-chr11-101974344-4	chr11	101973831	101974831	+	782.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-7316.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	4.85825117770757	5.13298986614284	5.45468426079243	5.33657753565227	5.2650964098847	5.31527457746875	0.296244359209849	0.434315984942269	0.798342379107878
Merged-chr18-44607721-2	chr18	44607216	44608216	+	665.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53949.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	3.14310823755063	3.35075618219538	3.24336576010351	2.94521539051566	2.97447951790871	3.02276857908795	-1.21811769492688	0.0677417661407376	0.340562919282128
Merged-chr7-123025317-4	chr7	123024804	123025804	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54740.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	3.86836794538754	3.89130512913581	3.66254703069012	4.14330618213771	4.10306942427634	4.05231783596451	0.851059514282357	0.0955589984454728	0.412068467177182
Merged-chr1-118507457-4	chr1	118507021	118508021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 16 of 39)	ID4|SINE|ID	-48256.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	5.05680636926096	5.05872510139035	5.29129315817292	5.15182565262669	5.21546620721644	5.35414370779823	0.220722036699335	0.537917734504288	0.854898366044633
Merged-chr6-125353801-2	chr6	125353301	125354301	+	992.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	4078.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.12173606111842	4.95008408049452	5.46243716937965	5.78168061481413	5.59815628999547	5.46760249655201	0.868363894983513	0.0166173439340816	0.142781490506718
Merged-chr5-103679515-2	chr5	103679015	103680015	+	840.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23783.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	2.9343339534055	3.20564355793698	2.99437728542069	3.2682703122627	2.81247170068792	3.35470205668584	0.478258947980062	0.508737696156392	0.839951707875093
Merged-chr13-49187632-4	chr13	49187142	49188142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	95.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.94155398677929	8.8666806486621	8.28872569229822	8.47445135313218	8.65738730902607	8.23061692551028	-0.367698580101178	0.163403270676096	0.537242865848567
Merged-chr13-44734515-4	chr13	44733990	44734990	+	895.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	3219.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	5.86178170084745	5.73638310230863	5.7480850964809	5.39792845362287	5.52998499126199	5.31637580005572	-0.666933823570695	0.0398932424240008	0.248530976667493
Merged-chr3-87357855-4	chr3	87357353	87358353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009690)	promoter-TSS (NM_009690)	-28.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	7.19585599931108	7.44709439837183	7.21907059609976	7.8900758692229	8.14797112215069	7.38461388710848	0.813760895134152	0.00368041841279697	0.0489123551017426
Merged-chr19-34550659-4	chr19	34550155	34551155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	-39.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	5.03766140514295	5.0183868817505	5.36673854886655	5.47854925923499	5.62824839752009	5.42992137794367	0.763104716637978	0.0305607104488257	0.211387268730679
Merged-chr4-120570089-4	chr4	120569614	120570614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355491)	promoter-TSS (NM_001355491)	162.0	NM_016748	51797.0	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	6.47287391368339	6.38676670046447	6.44894037707638	6.60116441964982	6.36441096948471	6.21058698472564	-0.0459789319831669	0.86887871285768	0.969751275858173
Merged-chr10-117828551-2	chr10	117828051	117829051	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	17423.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.05635874969614	5.91034844433623	6.28284395941791	6.53217877081049	6.35747016132131	6.57336590134576	0.672602860612532	0.0197030480999707	0.159884067320301
Merged-chr17-31289277-3	chr17	31288756	31289756	+	683.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6227.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	3.62182748574724	3.71636859597094	3.65738346933144	4.03929715940524	3.56196249356983	4.16017515467763	0.865161785951884	0.130003884307573	0.482195010397444
Merged-chr17-69176666-2	chr17	69176166	69177166	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17310.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.56564877040399	5.75908327907567	5.64177312508299	5.72078047823151	5.66883411205998	5.80720990012809	0.125438509560783	0.689194090992249	0.917319650405699
Merged-chr14-20370976-4	chr14	20370485	20371485	+	876.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024512, intron 7 of 13)	PB1D10|SINE|Alu	17925.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	3.83974461710947	4.18071718509898	4.17814293950487	3.7898857843499	4.42624859613805	3.79530398456875	-0.060557817191557	0.915984879306913	0.981201223155309
Merged-chr13-24614141-4	chr13	24613642	24614642	+	863.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-464.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.29307385056391	4.32691237249541	4.11177293929673	4.07783487639674	3.91423228847729	4.08397890203911	-0.662104060638458	0.167840274902113	0.544024525497838
Merged-chr1-172562309-1	chr1	172561809	172562809	+	1000.0	f1_balb.idr	intron (NM_177723, intron 6 of 6)	intron (NM_177723, intron 6 of 6)	2403.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	2.0539209899394	2.02755412692603	2.03643389336351	2.28078991159832	2.02920746709848	2.37847037891442	1.43776786793127	0.123794089404067	1
Merged-chr11-54878620-2	chr11	54878120	54879120	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	12237.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	4.60942685749922	4.68868661516753	4.75604726165641	4.99818897754894	5.2782190097479	4.82293207364623	0.841702741945554	0.0358603231476141	0.232660098905784
Merged-chr1-156673744-4	chr1	156673234	156674234	+	961.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 1 of 5)	intron (NM_023141, intron 1 of 5)	605.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	8.14063507144623	8.52200294685335	8.09567889677275	7.93576842855902	8.19723518449424	7.78300380408762	-0.401347165190759	0.109991111312517	0.443329553884578
Merged-chr3-87616947-2	chr3	87616447	87617447	+	734.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-612.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	5.6078651876665	5.59498567555405	5.86750279138052	5.31615021301789	5.34494395234057	5.37573596738863	-0.652488942075099	0.0494368640895389	0.282717703585041
Merged-chr5-38505533-4	chr5	38505024	38506024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	5.43528169496729	5.43885308101407	5.44052035932571	5.611994570468	6.0327915627607	5.90208525375271	0.789156202025626	0.0162878628742148	0.140603848328422
Merged-chr17-34638106-4	chr17	34637612	34638612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6771.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	6.46517870089718	6.46397070709314	6.73843920563678	6.6013411046076	6.95266934599604	6.89797568080481	0.432811542462498	0.113172582354835	0.44938889230771
Merged-chr12-91758298-3	chr12	91757830	91758830	+	809.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	28106.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.38724247989439	4.49063871965844	4.92457882533889	4.43364000593453	4.76689535391931	4.95536719315896	0.285070099541645	0.533959255990765	0.852777001391163
Merged-chr9-14381019-4	chr9	14380520	14381520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028013, exon 1 of 2)	5' UTR (NM_028013, exon 1 of 2)	222.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	5.03707352374778	4.83289231466134	4.97413374001494	4.63579511373892	4.49674652035053	4.49048517815978	-0.946004451520998	0.0195576452233361	0.159029559421657
Merged-chr2-51972966-4	chr2	51972470	51973470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001141948, exon 1 of 8)	5' UTR (NM_001141948, exon 1 of 8)	238.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	7.9678406317917	8.46735143387795	8.09318393896019	8.19516863903792	8.41648976068431	8.16291486277318	0.0956107623658974	0.695521582951981	0.919289041383579
Merged-chr3-38202444-2	chr3	38201963	38202963	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NR_040541)	TTS (NR_040541)	5656.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.22593071668846	5.42468383823926	5.28890003921398	5.72995989676724	5.76892028157402	5.41805704682906	0.648477138832616	0.0568742084397106	0.307497669645967
Merged-chr4-134920340-4	chr4	134919849	134920849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3276.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	6.9831076269952	6.97172803820354	6.97030634194742	6.85961233692692	7.50772086127438	7.1335655968664	0.346678318909341	0.212813347765768	0.605414648052721
Merged-chr12-69502966-2	chr12	69502466	69503466	+	982.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27416.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.40941338946263	7.49601813220138	7.28742489124005	7.06681352361853	7.31014326636216	6.276933717242	-0.643733193265456	0.0533280619898125	0.296028893893688
Merged-chr1-74698852-2	chr1	74698352	74699352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001014974)	TTS (NM_001014974)	-14683.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	3.88983909174037	3.70616084220053	3.33582101567007	3.57166568367809	3.28967178248021	3.84717140620557	-0.278672866199035	0.66492395979123	0.907721942545399
Merged-chr19-8710152-2	chr19	8709652	8710652	+	739.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	3745.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	2.86944205249371	2.92177208610891	3.04352704951911	2.99584763707412	2.96826505101538	3.22471977076079	0.558364607848354	0.410843195221086	0.783638488062019
Merged-chr19-14598357-4	chr19	14597866	14598866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302950)	promoter-TSS (NM_001302950)	-183.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	6.59746014840367	6.69593602014013	6.61527617493779	6.82479534604928	6.86801367146971	6.83212294137666	0.319975485559938	0.198030275576511	0.586228232893495
Merged-chr7-45452962-3	chr7	45452457	45453457	+	874.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B1_Mus1|SINE|Alu	6929.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	2.92826348422552	2.84784059451303	2.90184752862497	2.902087487718	2.55947351405656	2.85351380389209	-0.593790070420122	0.426009560757805	0.793519426440139
Merged-chr5-43745316-1	chr5	43744816	43745816	+	958.0	f0_balb.idr	exon (NM_001159963, exon 11 of 11)	exon (NM_001159963, exon 11 of 11)	36833.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.9000449571462	2.93336699718788	2.9355586193778	2.80447496409011	2.84642867240763	2.82548691710258	-0.480399558901518	0.490021987021831	0.829980359087456
Merged-chr3-63962959-2	chr3	63962459	63963459	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272035, intron 1 of 6)	B1F1|SINE|Alu	1774.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	3.53302631434831	3.51022306522925	3.10584189494002	3.52388146428049	3.25084882809127	3.42553515786691	-0.00327859904671596	0.995966061568043	0.998961028701257
Merged-chr13-23557164-2	chr13	23556664	23557664	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	2132.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	4.27932033290918	4.06884778231402	4.40801056886083	4.58153523570957	4.27393628223924	4.25468539850474	0.345211117202398	0.46401800197952	0.816106740830943
Merged-chr17-43032643-4	chr17	43032157	43033157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16102.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.91474531703578	6.84285995475748	6.88814999924667	6.78189958370069	6.72827352687894	6.94631159419712	-0.103505365567399	0.67679577203061	0.912557284748634
Merged-chr1-20820380-4	chr1	20819885	20820885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-73.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	5.10653932890102	5.50850472805061	5.34270491583124	5.52924666366819	5.44936793626348	5.43668131495964	0.273935750652337	0.433152171022739	0.797683328828543
Merged-chr13-52622676-2	chr13	52622176	52623176	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 4 of 13)	intron (NM_011518, intron 4 of 13)	25794.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.50754159979341	3.49918704631708	3.90003179126746	3.18544935049445	3.51400937583921	3.87833810885819	-0.316771983584303	0.626485778109147	0.892916235446326
Merged-chr10-122098197-2	chr10	122097697	122098697	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	2.82897394468958	2.75217683472584	3.04462482781821	2.74556980859537	2.75871833562959	3.06031757965932	-0.0925191448161452	0.898809211650053	0.976432549466174
Merged-chr1-64375570-2	chr1	64375070	64376070	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157234.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	7.79569266867136	7.9148425516762	8.19746725275313	7.76676883323105	8.04922990570357	7.92213284465117	-0.0779428964568789	0.742699289805909	0.935349213049343
Merged-chr1-162563433-4	chr1	162562945	162563945	+	987.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7070.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	3.88984470328496	3.97530419543333	3.81031928991066	4.19615462212217	4.56098839185681	4.57301585435888	1.55358363536209	0.00181877595947493	0.0287030595708649
Merged-chr5-31697856-4	chr5	31697364	31698364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181282)	promoter-TSS (NM_181282)	-186.0	NM_181281	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	8.97301286256869	9.01766379505914	8.56234424317999	9.07215131580176	9.20910864360404	8.49277138973909	0.13150868318535	0.626314454543933	0.892873937904836
Merged-chr9-65684530-1	chr9	65684030	65685030	+	743.0	f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	7982.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.04360607577145	3.01476204237625	3.05189114369718	2.76371277939602	2.84933243605966	2.94756149280238	-0.892401449539963	0.198163910346525	0.586436058331745
Merged-chr16-24946665-3	chr16	24946124	24947124	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-113015.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.37424800899632	3.53679812102123	3.69490279010271	3.68311606051048	3.45782219830031	3.61086569402662	0.171832300122152	0.765988109702261	0.942315542034148
Merged-chr4-111721650-4	chr4	111721165	111722165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1655.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	5.46668455554174	5.66441175272327	5.71810094589872	5.83964689229754	6.18994624869919	6.22740053609207	0.853768215064217	0.00743484789989707	0.0816253891086734
Merged-chr15-68068445-4	chr15	68067919	68068919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190437.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.43713865512316	4.59747384072868	4.42788412849049	4.5156336571658	4.2257452040799	4.21897318710072	-0.424646954500619	0.346384499747337	0.734677492075457
Merged-chr7-101412890-4	chr7	101412347	101413347	+	987.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027180)	TTS (NM_027180)	-8844.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.34364440709356	2.97351442536871	3.11001811721883	3.07193082112563	3.0045373982642	3.45609297492907	0.139931734648682	0.839521180421699	0.962784121274377
Merged-chr18-53272800-2	chr18	53272300	53273300	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	27138.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	2.91551869182526	2.96269373577157	3.05591528373094	3.05024027574291	3.00383191646251	3.12767690641601	0.380003914276299	0.5666016864087	0.867510884287005
Merged-chr10-44702910-2	chr10	44702410	44703410	+	789.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-244162.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.40712328848416	5.69861532551093	5.7284313561465	5.56907744901602	5.96592476654195	5.8876959502724	0.377102918674812	0.259919676400037	0.657488646922558
Merged-chr2-90535271-3	chr2	90534766	90535766	+	783.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	ID4|SINE|ID	45381.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.75855600962485	4.90957491956112	5.06398405285383	5.31139078112489	5.04740078427562	5.31769456541957	0.668166320810854	0.077457996135832	0.367138988463133
Merged-chr13-44952511-3	chr13	44952015	44953015	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 7 of 9)	ORR1D2|LTR|ERVL-MaLR	49581.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.14879095506608	3.94374217318571	3.89228108649645	4.13769736892633	4.12191394210847	3.96265653361584	0.223233637726567	0.653243935500663	0.903270202473883
Merged-chr14-31187120-2	chr14	31186620	31187620	+	965.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_022656, exon 10 of 21)	exon (NM_022656, exon 10 of 21)	-18479.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	4.11403886811025	4.15640472552414	4.77244233446816	4.21820627803927	4.23168170323051	4.66460027682475	0.0190144849665288	0.970617195957036	0.99351865396095
Merged-chr18-62976747-2	chr18	62976247	62977247	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1169.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	2.04866161356545	2.09888530770312	2.14542639391196	2.2228511134891	2.12575219857754	2.41421900713774	1.14537105547055	0.201768891635294	1
Merged-chr9-111045567-2	chr9	111045067	111046067	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11677.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.04250203552322	3.89346717923547	4.34477155411618	4.08831460329819	4.05797266976418	4.48872727256178	0.334673598140722	0.51288507494884	0.842184173595759
Merged-chr1-167338748-2	chr1	167338248	167339248	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-11243.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.96529274084628	5.92127351445878	5.86228479637364	5.3963318204238	5.72396864641577	5.25235918297066	-0.779555511091598	0.0219137049304744	0.171625137933925
Merged-chr4-43669287-4	chr4	43668787	43669787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175517)	promoter-TSS (NM_175517)	316.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	6.6600591605486	6.68073569632679	6.55691097843788	6.96956952938298	6.47001837030716	5.9676670035358	-0.144602822098382	0.671849018125976	0.910694246658612
Merged-chr7-63912619-2	chr7	63912123	63913123	+	808.0	f0_balb.idr|f0_c57.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4234.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.48468634696854	7.37705165981242	7.47538964326356	7.61545323128731	7.85309997189152	7.42695764780224	0.302979456263492	0.207645553296676	0.598510119317417
Merged-chr5-92318353-4	chr5	92317861	92318861	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8337.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	4.2948259804049	4.09546282156554	4.6079312661166	4.64882041768692	4.80378283557851	4.51163629417956	0.824955075993814	0.0713807071809908	0.350548745518577
Merged-chr19-41989960-4	chr19	41989477	41990477	+	968.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	ID_B1|SINE|B4	8214.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	5.6065738997373	5.48838765708511	5.43287016989108	5.62848208402345	5.91051103549234	5.33492629291899	0.276508134921717	0.430474878746951	0.7962775650974
Merged-chr6-143115230-4	chr6	143114760	143115760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153819, intron 7 of 8)	intron (NR_153819, intron 7 of 8)	-15108.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	6.507324738397	5.89406697972693	6.1394481996828	6.56348004237037	6.02602179270752	6.01715315938536	0.0373775106752579	0.914171862879722	0.980894573251353
Merged-chr5-66051815-4	chr5	66051333	66052333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIR|SINE|MIR	46346.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.81993780187417	4.92647389860164	5.16390480186712	5.02158919343285	5.22951945632746	5.2583396016618	0.435616558066935	0.246915484879363	0.644034471202848
Merged-chr12-17658610-4	chr12	17658104	17659104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32205.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.68755616123689	6.70097028362563	6.80509559341875	7.25316245759439	7.30748464435265	7.12561758152675	0.776006679805036	0.00130258023112741	0.0221601095627989
Merged-chr8-22658714-4	chr8	22658212	22659212	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010546)	TTS (NM_010546)	-5275.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	6.8000405246925	6.95575892196905	6.81852859236557	6.8117176037725	7.13544590419029	7.08355307742256	0.241158673915977	0.345216050515139	0.733666487940844
Merged-chr2-166293159-4	chr2	166292669	166293669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	19261.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	5.80906345682503	5.66568883319876	5.84691884291421	5.33825810522563	5.79623509462581	5.48035491173712	-0.37960709670575	0.264695212819788	0.662637922507639
Merged-chr8-85035585-2	chr8	85035085	85036085	+	870.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	6.20833651344219	6.26175949328719	6.57666010654846	6.70408242693594	6.99602144007039	6.60217334124351	0.70256141448375	0.0140534012328233	0.12716646904016
Merged-chr17-73972480-4	chr17	73971952	73972952	+	989.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22256.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.27491442600158	6.1629862129226	5.64122548263767	6.07588219982338	6.57573754501384	6.21491771087288	0.948346750377606	0.0139301689582288	0.126346359131927
Merged-chr15-84916794-3	chr15	84916292	84917292	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-6636.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	2.81908110284944	3.11859988231569	2.94004334632689	2.6550503603548	2.69297884166068	2.63447347486303	-1.61530241526992	0.0351249022002448	0.230023049132533
Merged-chr2-121451744-1	chr2	121451244	121452244	+	674.0	f1_balb.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	2546.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	4.91187253903527	4.70617055820643	5.11188978224805	4.92967575676085	5.27932775450237	5.26913476980148	0.553884476497761	0.157881705835128	0.529441058281115
Merged-chr1-37585144-2	chr1	37584644	37585644	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44128.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	3.94844796029327	3.82733080743434	4.00693065585656	3.85620179503066	3.55727722771597	3.93399385243324	-0.455869182680555	0.395528624205515	0.772888679791754
Merged-chr3-103860797-1	chr3	103860297	103861297	+	791.0	f1_c57bl6.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	520.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	6.57242756232648	6.51841224431494	6.68508711870762	6.70627510068473	6.91569996920493	6.61205501580348	0.270991517924735	0.303725577353157	0.700260400121957
Merged-chr11-69678512-2	chr11	69678012	69679012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 4 of 10)	intron (NM_030702, intron 4 of 10)	3458.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	4.54833035278757	4.38328027290179	4.64584507692529	4.40169889604149	4.44273926389923	4.55503030763877	-0.149499478166624	0.728589438693272	0.930478966998914
Merged-chr13-17982858-4	chr13	17982363	17983363	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10488.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	4.29626797619942	4.36915570923284	4.07576094199506	4.5749089388308	4.59313422748707	4.34503420823334	0.651998666071553	0.154392116722301	0.523666674943519
Merged-chr1-151428532-4	chr1	151428015	151429015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025819)	promoter-TSS (NM_025819)	-27.0	NM_026876	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	7.67061678766293	7.89305314619639	7.54426921892451	7.54467896128387	7.70420169552738	7.40058982223305	-0.222846314697489	0.355723858863288	0.742533292794428
Merged-chr5-137626655-2	chr5	137626155	137627155	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1577.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	2.95907999352509	2.87908721732838	3.21876507380111	2.86158457380292	2.766113639765	3.01324789600571	-0.680417021958411	0.337463966666881	0.727414835127997
Merged-chr7-113324184-1	chr7	113323684	113324684	+	917.0	f1_balb.idr	intron (NM_133700, intron 9 of 10)	intron (NM_133700, intron 9 of 10)	45155.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	3.24941213065841	3.07648391644082	3.38108498415917	3.06844992757468	3.07119769747504	3.45087258752303	-0.145698199003051	0.825667879748111	0.958871344165038
Merged-chr4-145026769-3	chr4	145026277	145027277	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	133640.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.64259440359609	5.99938125955943	5.5807908765669	5.27168267534996	5.24400465249281	5.37614544554582	-0.894305772180445	0.00912676091497586	0.0944786666102652
Merged-chr17-87249230-4	chr17	87248820	87249820	+	730.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16627.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	3.37222444433486	3.09118950841881	3.24370002140241	3.16543057668054	2.92726101386136	2.89371464452981	-1.08420649639178	0.117253003939496	0.457311976431135
Merged-chr13-37779955-1	chr13	37779455	37780455	+	582.0	f0_balb.idr	Intergenic	Intergenic	-46083.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.1032262925234	5.66503723550192	5.95939813408752	5.90098442751211	5.4440194923295	5.42926439331463	-0.555936995065059	0.114056486899338	0.451000910607807
Merged-chr15-6554806-4	chr15	6554332	6555332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25015.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.54962122696434	6.49020057944145	6.90479096709014	6.67843652881111	6.36807671163164	6.8822674053704	-0.00383854064307984	0.98968845904493	0.997611022725407
Merged-chr2-52954135-2	chr2	52953635	52954635	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	96267.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.93317367319504	5.84238768753375	5.73343860686289	5.49622766245446	5.6797415860272	5.63357653290006	-0.430647737340716	0.169871767874488	0.547029299171809
Merged-chr14-52105112-1	chr14	52104612	52105612	+	628.5	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-1091.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	6.42645594376001	6.27028446256505	6.37903018517037	6.1300286958588	6.33631795475429	6.20088696515615	-0.21222059675038	0.445324527300439	0.805096431670068
Merged-chr9-118764383-2	chr9	118763808	118764808	+	987.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	52616.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.63835525751316	3.24055151682006	3.20965277270428	3.12197508040139	3.09581280712822	3.39679723691009	-0.710407139997246	0.2832222380871	0.681173833410735
Merged-chr3-41563720-4	chr3	41563217	41564217	+	941.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130185)	promoter-TSS (NM_001130185)	-34.0	NM_001130185	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	6.04126915337594	6.3451219145321	5.72962407473012	6.0001945765369	6.23775023065842	5.9262123365326	-0.0115736407565034	0.972013131027846	0.993868590220018
Merged-chr15-72972005-4	chr15	72971496	72972496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029640, intron 8 of 21)	ORR1D2|LTR|ERVL-MaLR	83816.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.54778754881151	4.35676072212413	5.09648725228021	4.46013845614053	4.58638540210667	4.53422060053481	-0.393097233789142	0.402909048597435	0.778365878954155
Merged-chr10-81384824-4	chr10	81384330	81385330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133964, intron 1 of 4)	intron (NM_133964, intron 1 of 4)	402.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	8.13345431185268	8.25591925970429	7.80087570697088	8.13089054150707	8.44647765640289	7.53266090748383	0.0272958444299441	0.927304329095623	0.983584626679457
Merged-chr16-92396210-2	chr16	92395710	92396710	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019466, intron 2 of 3)	intron (NM_019466, intron 2 of 3)	3868.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	3.02704511878765	2.84667790869374	3.44208356351352	2.97735144063092	2.79644210703693	3.14806607707194	-0.648358570502597	0.376730770302607	0.759338547922564
Merged-chr3-36476431-2	chr3	36475931	36476931	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	494.0	NM_028183	72282.0	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding	5.63228376742267	5.57561524701158	5.3658120431436	5.37099980026456	5.43859825167374	5.6046316960362	-0.132147028982745	0.692620563413604	0.91870248759071
Merged-chr11-80932554-3	chr11	80932055	80933055	+	841.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034013, intron 3 of 9)	intron (NM_001034013, intron 3 of 9)	74166.0	NM_029367	75622.0	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	4.02675855582317	3.95371154126852	4.08398199830358	4.36563663947083	4.30881687012148	4.24681540470683	0.819880293687529	0.0792148647274132	0.372058242890177
Merged-chr2-112239412-4	chr2	112238888	112239888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-453.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	6.13545412518476	6.14815422511929	6.65874548296534	6.20365494810472	6.34782765794849	6.52842176137611	0.0610062191653228	0.844040089742177	0.963711687630021
Merged-chr7-122132975-4	chr7	122132461	122133461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289845)	promoter-TSS (NM_001289845)	-15.0	NM_001289845	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	7.5497748315991	7.73296094625316	7.60720684479777	7.66808555295956	7.8900564525499	7.58696170167724	0.137031930578279	0.553269549425012	0.862238984416102
Merged-chr9-113781075-4	chr9	113780597	113781597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-12233.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	6.38321048903727	6.63220210279542	6.3335737436523	6.08123854631045	6.31002047718862	6.14388415948878	-0.452514876407669	0.114243203332562	0.451407710729328
Merged-chr6-49262590-4	chr6	49262012	49263012	+	722.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	1540.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	6.29250931749649	6.43970535980926	5.81956192260447	6.19300944178528	6.36694681831912	5.96182457877443	-0.0487091542538856	0.881803255157503	0.972911388235196
Merged-chr19-7240483-3	chr19	7239978	7240978	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027643, intron 1 of 7)	intron (NM_027643, intron 1 of 7)	744.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	6.68180460430657	6.57396985290621	6.39830794281877	6.7039433261478	6.63760263392437	6.35871878709401	0.0316282669981785	0.90871044042831	0.979315602159837
Merged-chr17-27624361-2	chr17	27623861	27624861	+	580.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-909.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	4.29763427110281	4.50345991028732	4.79706429281336	4.37712964414226	4.32362318688396	4.44398987798759	-0.40369777743459	0.373628571141426	0.757529198534216
Merged-chr19-55364889-2	chr19	55364389	55365389	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	48832.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	3.10733036456187	3.16646747096246	3.3240321249073	2.91841522858452	3.07257899858844	3.28751855209177	-0.43904593718161	0.509942673884995	0.840623252721494
Merged-chr18-60744801-4	chr18	60744314	60745314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1932.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.79352954805573	6.524949833827	6.56270028159344	6.67006289199617	6.83342325930364	6.51440758260496	0.0836594242004597	0.758119145016779	0.940090072784069
Merged-chr16-21499333-3	chr16	21498816	21499816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 21 of 46)	intron (NM_001081366, intron 21 of 46)	76198.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	5.6512498831162	5.3534406855662	4.70909215175295	5.15357165592456	5.04649991433322	4.48469248089996	-0.758801395324372	0.120957164142458	0.465085864763572
Merged-chr7-83650864-4	chr7	83650356	83651356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	4639.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.14868370158895	5.95039417726069	6.05457180768289	5.7369879058412	5.92316093992812	6.1980573201338	-0.165882948271997	0.592410864951338	0.878027089897609
Merged-chr11-74838596-4	chr11	74838092	74839092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	CpG	7668.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	9.06446088833203	9.19869470522877	8.5451983205199	8.77389656107578	9.23538773387197	8.49181627110172	-0.126453777568273	0.660058941825002	0.905843288604423
Merged-chr12-119137783-2	chr12	119137283	119138283	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100493.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	2.59484825594026	2.71995946857354	2.56963874557437	2.86826797280715	2.85872499895624	2.8376882108711	1.18565025664249	0.113832736589783	1
Merged-chr3-116422926-3	chr3	116422434	116423434	+	906.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 1 of 13)	intron (NM_001173553, intron 1 of 13)	1098.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	4.7887132565867	4.20656179025306	4.43376070023503	4.61393649653221	4.28381294834631	4.54393697128963	-0.049549537166824	0.917055556898133	0.981520635663402
Merged-chr5-43883131-4	chr5	43882620	43883620	+	871.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	14311.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.29165840198401	7.21873085842617	7.08945159647383	7.19639627997516	7.43244798048259	7.27014753677746	0.150403931621534	0.529468987749245	0.850904712036958
Merged-chr12-8923759-2	chr12	8923259	8924259	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	B3|SINE|B2	2452.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	7.02175462963904	7.2811204911612	7.33841399070354	7.53839299499242	7.80304821760922	7.31675759192632	0.530146911760693	0.0409611123324287	0.252466091478276
Merged-chr15-38081987-2	chr15	38081487	38082487	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-3133.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	2.27203673215361	2.13090682291061	2.32493391361089	2.42334063521764	2.1997448290135	2.46391818390517	0.810749631176669	0.349554811833215	1
Merged-chr9-23670843-4	chr9	23670352	23671352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-427166.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	4.1471451665507	4.08640479535712	4.34153773165986	3.98361211042184	3.91192432736992	4.1060345202315	-0.564817864651232	0.246392647976597	0.643462437124829
Merged-chr5-148399917-4	chr5	148399416	148400416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-12.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	5.89205415460038	5.8203865563422	5.01848186872789	5.91554027516378	6.0457031653507	5.43027121999507	0.334321731904054	0.426624155290601	0.793840707522572
Merged-chr1-171150577-4	chr1	171150057	171151057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008623)	promoter-TSS (NM_008623)	46.0	NM_025321	66052.0	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	7.99325647487159	8.16747715448409	7.95804481136713	7.92441208494205	8.26847143351567	7.76696339004227	-0.045312351987602	0.8525930199445	0.965441332619443
Merged-chr17-50466971-2	chr17	50466472	50467472	+	891.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42575.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.57664725152943	5.88973835947487	5.46374800798244	5.8258033777358	5.81315556770347	5.93020501868325	0.334650973025576	0.305289607838214	0.701501724978019
Merged-chr13-73765438-4	chr13	73764936	73765936	+	938.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	1739.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	5.60762626438334	5.95124785761131	5.77873396431437	5.59370950722677	5.72227090546095	5.9119111786853	-0.0843288411126474	0.794989019200102	0.950969613421537
Merged-chr1-37478073-4	chr1	37477547	37478547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1MC|LINE|L1	10558.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	7.22212179568581	7.31486059642265	6.73196567455264	7.43556839321585	7.65435278324879	7.22743089842881	0.492299222432699	0.0806181497731596	0.375697284028287
Merged-chr19-42483583-2	chr19	42483083	42484083	+	790.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35222.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	2.6414301273712	2.68520332143227	2.72731603487496	2.55595921495796	2.6037594197503	2.54937424956489	-0.636964204756291	0.401841734204324	1
Merged-chr4-12423608-2	chr4	12423108	12424108	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-251593.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.73009088457369	4.71754779827369	4.65252847321107	4.89441843711131	4.8162166707513	4.71943854689893	0.257439556029922	0.514169476501825	0.842965219805014
Merged-chr19-53944667-4	chr19	53944168	53945168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	-41.0	NM_001195338	100503572.0	Mm.375091	NM_001195338	ENSMUSG00000084957	Bbip1	2310002J21Rik|2610002B11Rik|4930560M04Rik|Ncrna00081	BBSome interacting protein 1	protein-coding	7.20876000000778	7.34252215895738	7.29748899415127	7.38109706567134	7.34300905731762	7.3985094086963	0.131846185411969	0.561417124061586	0.865407801976397
Merged-chr18-39485488-2	chr18	39484988	39485988	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	1757.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.63085978850035	3.51462085654939	3.57218959646291	3.89416937267968	3.64251530166747	3.80156440727451	0.701928649811758	0.201599414879933	0.591133924889107
Merged-chr11-115058916-2	chr11	115058416	115059416	+	986.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	3123.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	3.79297109401735	3.67375930327671	3.85288400251086	3.94614681469852	3.70722380919391	4.06295706798686	0.42435558066387	0.424432574214628	0.792697196836987
Merged-chr14-64949961-4	chr14	64949476	64950476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253731)	promoter-TSS (NM_001253731)	-69.0	NM_153414	210925.0	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	5.39155194781492	5.71791303248825	5.63652365453753	5.59858656424645	5.29287074087771	5.82254315556709	-0.0233733750793045	0.947499684194339	0.988008807662239
Merged-chr13-91361722-3	chr13	91361234	91362234	+	565.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26351.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	2.49863259159757	2.51661938761955	2.69488811302497	2.40563240578548	2.18797579674346	2.3934308469622	-1.59678572434599	0.0663739542833912	1
Merged-chr16-24773932-4	chr16	24773428	24774428	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	AT_rich|Low_complexity|Low_complexity	52073.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.6625449963972	4.60003210012629	4.35784430980829	4.50592783016	4.61317848650494	4.68248943990191	0.107026074583257	0.801899220392857	0.95309722218102
Merged-chr1-136629574-4	chr1	136629070	136630070	+	871.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177643, exon 2 of 2)	3' UTR (NM_177643, exon 2 of 2)	4669.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.89689562424659	5.1216153367534	4.96498256787987	5.47311953074609	5.3962336147779	5.03145416231176	0.662861491696613	0.077993586448468	0.368771853778895
Merged-chr3-105014426-2	chr3	105013926	105014926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	38527.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	3.48372648273868	3.54839234308294	3.47102497772951	3.63391415855724	3.5714636089489	3.54236815448348	0.290277833232596	0.605504803441861	0.883581756351046
Merged-chr10-128379642-2	chr10	128379142	128380142	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172790, intron 5 of 27)	intron (NM_172790, intron 5 of 27)	2518.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	2.28026353690023	2.20848289406569	2.70567642651473	2.08663877599401	2.1683579589333	2.15934404980767	-1.90024871833167	0.0470135749487182	1
Merged-chr7-125878191-4	chr7	125877678	125878678	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101488)	TTS (NM_001101488)	170308.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	2.54758916431124	2.63308378062128	2.76117494866839	2.66680714559126	2.37344187591887	2.58785068106765	-0.585189195428876	0.462897643447859	1
Merged-chr3-121847287-10	chr3	121846777	121847777	+	740.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-31975.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.71957387833126	3.65573160380865	3.78888845638572	3.88374436608636	4.0536081553258	4.27154419867818	1.10474336768108	0.0346310316305826	0.228135450868302
Merged-chr14-75791224-4	chr14	75790732	75791732	+	840.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4195.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	5.59723875457553	5.6686305067783	5.53583703197737	5.89664004886713	5.64964500073925	5.9108477155205	0.384224747738205	0.226832525650377	0.621805389547228
Merged-chr16-32277639-6	chr16	32277166	32278166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027355, exon 1 of 6)	5' UTR (NM_027355, exon 1 of 6)	205.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	7.29273972516281	7.56686784694116	7.48767815939748	7.50906135028167	7.37933751396824	7.50476723749512	0.0131669651449117	0.954969359495071	0.989683851514547
Merged-chr13-37573817-2	chr13	37573318	37574318	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228473.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.02226756859386	4.11523143194227	4.25113207166905	4.10651553122127	3.83605326922233	4.14164717770173	-0.294130988404712	0.553174360290004	0.86218357192917
Merged-chr6-54933525-1	chr6	54933025	54934025	+	679.0	f0_balb.idr	intron (NM_001171007, intron 9 of 11)	intron (NM_001171007, intron 9 of 11)	38136.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.93611484446933	4.80346309685794	4.95864312145071	4.84999893355393	4.8976165519632	4.87901545253353	-0.046130234731557	0.903526924022625	0.977832715016903
Merged-chr15-101971972-3	chr15	101971453	101972453	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	3.0146832568339	2.99095818587414	3.13745425104589	2.93572119239382	2.90364183431465	2.91570121431053	-0.603062515182931	0.372531531689773	0.75637531103441
Merged-chr16-11066251-4	chr16	11065754	11066754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-44.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	6.74439502785058	6.74004523788049	6.44649446418523	6.51877040832136	6.41656219264156	6.10342062665509	-0.46759412861724	0.10317693509307	0.428296315983601
Merged-chr12-108994783-4	chr12	108994269	108995269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	73448.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	3.97710142442912	3.94938078707533	4.0004606522406	4.05154869048387	4.21967716597632	4.0695811452848	0.430346204000264	0.374103204228825	0.757860919741737
Merged-chr15-81024041-4	chr15	81023553	81024553	+	952.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46288.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	3.87833195891103	4.19883609521013	4.03501420241686	4.01703623816514	4.23604377873791	4.19758765694289	0.309699173793626	0.530799790608027	0.851363932161699
Merged-chr10-67200429-4	chr10	67199909	67200909	+	932.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	14659.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.64270717051398	5.48941769647604	5.57659200061704	5.71217414081711	5.75843740535687	5.87059736825536	0.382026013045437	0.223258532538901	0.618076123752226
Merged-chr17-23674456-2	chr17	23673958	23674958	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008425)	promoter-TSS (NM_001008425)	-581.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	5.8155591098937	6.04179481432017	5.84236278155687	5.88856728993445	6.18871663369116	6.21530215002783	0.342757905322374	0.26284279184574	0.660843723338882
Merged-chr14-60738077-2	chr14	60737577	60738577	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310594, intron 1 of 9)	Lx9|LINE|L1	5173.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	4.75930104679176	5.09073631328529	5.32667397199982	5.15634828783095	5.37668243420511	5.4739906562294	0.552434339751278	0.153670073777624	0.522647843813143
Merged-chr2-159783424-3	chr2	159782920	159783920	+	952.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163921.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.80092839552988	4.85836179984308	4.95309139481129	5.15974024311486	4.74949400891565	5.47118801211999	0.595131944904272	0.154343745337167	0.523641596057681
Merged-chr2-127086952-2	chr2	127086452	127087452	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 5 of 7)	intron (NM_026678, intron 5 of 7)	16295.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	6.31336028387943	6.18200783450112	6.29306963991417	6.70072969052159	6.85939385693276	6.3535030705382	0.65546940523131	0.0220147970803649	0.172113805831345
Merged-chr19-61227882-4	chr19	61227364	61228364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 1 of 11)	CpG-7695	554.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	9.12822046920704	8.95532788302407	8.76525067206338	9.14639583781714	9.27294761638789	8.85207416922507	0.198197258461265	0.383875435344903	0.765066041297693
Merged-chr4-53352889-3	chr4	53352393	53353393	+	893.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12E|LTR|ERVK	-82661.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	5.9256682342535	6.13499813538173	5.68272532341058	5.49692617707086	5.71443290736982	5.38104649116829	-0.701105519693341	0.0384068673799533	0.242599151366519
Merged-chr8-70791579-4	chr8	70791074	70792074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	859.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	6.34291100666245	6.43658357698858	6.1670748236945	6.19659248121261	6.52451314852865	6.44652977605486	0.117449788568497	0.680899580275919	0.914504446345046
Merged-chr19-55299556-4	chr19	55299055	55300055	+	855.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360595, intron 9 of 9)	intron (NM_001360595, intron 9 of 9)	16481.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	3.73718527145932	3.97042012986243	3.97576538933045	3.9955135428385	4.15531133108876	4.22751711773268	0.685683002057369	0.171671089329816	0.549979797938767
Merged-chr5-142463914-4	chr5	142463425	142464425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172725)	promoter-TSS (NM_172725)	-6.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	7.45794437483955	7.92807599632917	7.68346892998066	7.75422911730448	7.6967300156639	7.74884083116683	0.0366712295030712	0.879234060245522	0.972083703102674
Merged-chr19-32215695-2	chr19	32215195	32216195	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4682.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.62882616962283	5.38175103738006	4.84812625767147	4.68819399930432	4.2784482896813	4.87643775867209	-1.54076928875736	0.00073219038714928	0.0141519390787264
Merged-chr4-130924238-1	chr4	130923738	130924738	+	547.0	f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	10904.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	3.06054745685927	3.04652527394354	3.57964678013113	3.32630611403943	3.07213249499014	3.23223928378135	-0.134934294303165	0.843107922277816	0.96330726515818
Merged-chr9-99488991-4	chr9	99488480	99489480	+	755.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	18559.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.39535767243182	4.14378967413341	4.17293725168424	4.61841444262196	4.48444594987569	4.38397979839588	0.663441366485371	0.143422941966384	0.505503903555525
Merged-chr3-142393533-1	chr3	142393033	142394033	+	548.0	f1_balb.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	-1683.0	NM_001190857	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	3.40839352360416	3.34535498465117	3.27394997690246	3.17504013732165	3.2486845962677	3.28817602050183	-0.445936851591418	0.467159681363244	0.817799124670154
Merged-chr11-114683445-2	chr11	114682945	114683945	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	7977.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.40524023003892	6.47626041779082	6.30943674318407	6.6369681934923	7.01602420936421	6.68010993176126	0.627958645875819	0.0229488327656553	0.176939073087903
Merged-chr5-21213111-4	chr5	21212636	21213636	+	800.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	MTD|LTR|ERVL-MaLR	26869.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.92572823459068	4.63428683128416	4.86068285913977	4.40700847434526	4.69622840427978	4.81713546739245	-0.377329972827063	0.372663388394217	0.756509678731026
Merged-chr19-32957212-2	chr19	32956712	32957712	+	972.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199635.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.50739393477308	5.53855508648211	5.49131653478689	5.26750767607612	5.60505829461146	5.63664465236817	-0.000658133632743907	0.998442040538471	0.999665481732462
Merged-chr13-59821447-2	chr13	59820947	59821947	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	1700.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.80049293478156	5.9180809073203	5.92943170155341	6.01439171723625	6.43829316954648	6.38443839218776	0.70524093195488	0.0200172542674937	0.161457511931913
Merged-chr2-71378182-4	chr2	71377651	71378651	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10597.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.33908346187238	5.50988809468035	5.30006621401681	6.05476591393902	6.28788097943406	5.7070785325192	1.19680204008599	0.000452330232988009	0.00971540888654265
Merged-chr4-41741400-4	chr4	41740898	41741898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286551)	promoter-TSS (NM_001286551)	-39.0	NM_001286551	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	5.30107888570354	5.83482168405966	5.72016393548438	5.72936624083457	5.7284941558671	5.53484764009123	0.0633737907070329	0.855273404381358	0.966123042475177
Merged-chr18-66002709-4	chr18	66002210	66003210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172062)	promoter-TSS (NM_001172062)	-75.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	4.56170754920659	4.39486863821137	4.87986247277653	4.64419196148206	4.26897892891044	4.1653852744191	-0.595592583619243	0.213193924752191	0.606020773803646
Merged-chr5-65867945-4	chr5	65867433	65868433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	MER63D|DNA|hAT-Blackjack	4364.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	7.70668542848384	7.70764817315354	6.94318023980297	6.94179252255709	7.55140693088253	7.01651483159791	-0.440283979542292	0.176534803153363	0.556911885835042
Merged-chr10-79704897-1	chr10	79704397	79705397	+	912.0	f0_c57.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	539.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	6.66400409997997	6.69282315842615	6.40267836451437	6.85005351578072	6.81812108311448	6.27485843403223	0.135468891840989	0.649106586579156	0.902118776529041
Merged-chr2-157156343-4	chr2	157155836	157156836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 19 of 21)	CT-rich|Low_complexity|Low_complexity	-21114.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	4.82788346761337	4.7823071533976	5.34352253473865	4.87255871241447	4.95450967900422	5.07583002679696	-0.0619943194088406	0.879619489813539	0.97219374767077
Merged-chr1-191878142-4	chr1	191877659	191878659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28622.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	6.89416462607535	6.67711631597947	6.78659856852231	7.05933928711853	7.19100005013538	6.73362317167633	0.355233128301995	0.183631903425575	0.566924177418387
Merged-chr12-100729207-4	chr12	100728705	100729705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4085.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	6.18099744730409	6.217939977289	6.164861716455	5.76304514543477	6.01277186770665	6.03040106474257	-0.426560142709702	0.144381139887707	0.50717662222064
Merged-chr11-63091215-4	chr11	63090713	63091713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	29554.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	4.52482575168433	4.07755129130301	4.60840914681809	4.75874127679402	4.57819549750861	4.78742230098508	0.709391452749453	0.121017916494672	0.465218701579518
Merged-chr15-100463131-2	chr15	100462623	100463623	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5888.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	3.51429094369049	3.05860090707656	2.93653240684913	3.43194436723811	3.39843730186945	3.27104378913074	0.666289539778457	0.352267159666631	0.739892452126502
Merged-chr5-139393035-3	chr5	139392538	139393538	+	939.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001362206, exon 2 of 2)	exon (NM_001362206, exon 2 of 2)	3134.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	3.99163084721325	3.98038712241017	4.392689790054	3.71355925305885	3.66018885014036	4.21965525535803	-0.741097014309968	0.18504081007104	0.569091204638575
Merged-chr18-24529543-2	chr18	24529043	24530043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360807, intron 1 of 7)	CpG	661.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	6.16293534230401	6.39358708657379	5.95190281299752	6.36274054863006	6.23302511742265	6.32214102388502	0.183297191707472	0.533555836762323	0.852484319020423
Merged-chr6-120358847-1	chr6	120358347	120359347	+	596.0	f0_balb.idr	intron (NR_045558, intron 1 of 9)	intron (NR_045558, intron 1 of 9)	-1378.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	2.86175345613671	2.72182342828746	2.89531940837691	2.85290022468255	2.64366112356217	2.96770419274225	-0.0198211292365199	0.978318624381273	0.995109482391044
Merged-chr9-45906925-4	chr9	45906424	45907424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310839)	promoter-TSS (NM_001310839)	-13.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	7.92421498524334	8.26209869054839	8.14193939775959	8.26826170815561	8.38172473923904	8.34257216930524	0.301669507938715	0.168086168682477	0.544431785572215
Merged-chr19-29251699-4	chr19	29251200	29252200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-103.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	7.81745747838734	7.19997809521253	7.62028278058951	7.63041629005885	7.02705001116246	7.48671660582152	-0.24598657647936	0.405877814981328	0.780439975167702
Merged-chr16-23314460-1	chr16	23313960	23314960	+	1000.0	f0_c57.idr	intron (NM_001252506, intron 1 of 6)	L1_Mus3|LINE|L1	23990.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.79680176075661	6.80566175557207	6.97109013561722	6.81213130169794	7.2834428075171	7.10667114475248	0.354421058336436	0.182084255361835	0.564677675828242
Merged-chr4-33250260-3	chr4	33249645	33250645	+	800.6592410000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1358.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	5.13159889669489	4.73231770813515	5.14246511271501	4.95811514212295	5.12501223946885	5.44119513951453	0.359533977616501	0.369431964849761	0.754132761308333
Merged-chr2-68825009-6	chr2	68824459	68825459	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36482.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.52549637647958	4.20833889116355	4.6258464858566	4.58819181648148	4.45668439867753	4.72881600167017	0.325061166222938	0.466360407300049	0.817548020027863
Merged-chr3-94413151-4	chr3	94412630	94413630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357713)	promoter-TSS (NM_001357713)	-114.0	NM_001357713	72634.0	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	5.47787483629038	5.57578037905295	5.62246203318046	5.52570150432122	5.35814664777554	5.42992844827599	-0.228930129197104	0.484675233688678	0.826994448591038
Merged-chr7-4032233-2	chr7	4031733	4032733	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	30971.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	3.18138968036449	3.3190254376822	3.15184692225762	3.2965860146488	3.37206571255735	3.39722571210773	0.530642743003395	0.38971235329422	0.769291741623303
Merged-chr3-100969726-4	chr3	100969208	100970208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013026)	promoter-TSS (NM_001013026)	-45.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	4.02457258647502	4.19166301102941	4.45559567261222	4.46927683768098	4.10763055653112	3.97240397405527	-0.0670704585951227	0.895084388518563	0.975649839525428
Merged-chr11-50131366-4	chr11	50130843	50131843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-17.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	8.29901932157262	8.30079788650848	7.82406371994088	8.23952709806459	7.99326634336986	7.75529501506916	-0.213451930836092	0.410266000154533	0.783153478130751
Merged-chr1-177726282-4	chr1	177725782	177726782	+	779.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR34D_MM|LTR|ERVK	-3532.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	2.7608823730642	2.61816116058121	2.86915868485699	2.84137262400824	3.04263440101103	3.05882728879256	1.19004033979527	0.101766167681262	0.425709594558994
Merged-chr11-115201211-1	chr11	115200711	115201711	+	541.0	f1_c57bl6.idr	intron (NM_001033393, intron 4 of 9)	intron (NM_001033393, intron 4 of 9)	13724.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	2.63222127694251	2.55903712342368	3.04841135562805	2.92958570099254	2.72072768673227	3.27946055868832	1.11740409555657	0.162817136236532	0.536188662408322
Merged-chr11-50238034-2	chr11	50237534	50238534	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313968, intron 1 of 4)	intron (NM_001313968, intron 1 of 4)	498.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	4.89537149565574	5.1710117365046	5.52994651181296	5.21282129157211	5.41499080142223	5.11086579185014	0.0958889222633019	0.807130925620409	0.954472851360829
Merged-chr6-97150424-4	chr6	97149911	97150911	+	794.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1528.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	6.93541082457762	6.85125901892369	6.5993866985687	6.83938827035935	7.05897920695021	6.69319913681115	0.110269802960389	0.682814287808409	0.915229409129838
Merged-chr14-73413667-2	chr14	73413167	73414167	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-28378.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	3.94389268048533	4.14215659007762	4.03982044306514	4.10679457061803	3.85086794324146	4.1083836200734	-0.0750903377055831	0.880310601944834	0.972493267651278
Merged-chr10-77626117-1	chr10	77625617	77626617	+	556.0	f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	3796.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	3.3731869429133	3.28839939706465	3.6639169607906	3.7845970279761	3.356066526282	3.63198334500686	0.560899511513463	0.358767475004712	0.74511591603914
Merged-chr7-90142314-3	chr7	90141846	90142846	+	666.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	12133.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	5.10497649289939	5.36455393859936	5.36322339131529	5.42053489794353	5.43311767287337	5.23625756635011	0.184774979940561	0.597612954895491	0.880433364120803
Merged-chr2-129512332-4	chr2	129511862	129512862	+	988.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	L1_Mus2|LINE|L1	24240.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.82210656088094	5.92797611351279	6.02088507946874	5.85362671630573	5.79702903546689	5.87402393986115	-0.145338099148873	0.626741176509557	0.892916235446326
Merged-chr14-73553595-2	chr14	73553095	73554095	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361638, intron 1 of 9)	intron (NM_001361638, intron 1 of 9)	809.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	3.94886170751763	4.02331041039535	4.21260834009564	4.23564541513296	3.74230894162208	3.61852704882734	-0.488993660775107	0.384808766068041	0.76593550394674
Merged-chr18-80708197-4	chr18	80707741	80708741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-68.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	8.29399626897427	8.21700068285821	7.62770761193054	8.30428104673915	7.88084751248905	8.02820731896804	-0.00562148451565642	0.98362683735906	0.996399860725864
Merged-chr19-5131409-3	chr19	5130901	5131901	+	716.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12993.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	3.37006347272803	3.25477905866916	3.19349581856781	3.61506407811365	3.76848528482672	3.86762059207529	1.75603584784492	0.00385759281265471	0.050540479098626
Merged-chr13-24698856-4	chr13	24698332	24699332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	intron (NM_001080381, intron 13 of 14)	60184.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	5.00730963096843	4.99328051309067	5.03444531721896	5.06666806569618	4.10861261869356	4.51446131489683	-0.857676050531775	0.0824117005515728	0.379666088554908
Merged-chr12-4544589-4	chr12	4544085	4545085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	20472.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	4.03800540042221	4.11554688662284	4.48973328730747	4.08310660569976	3.99703993899955	4.13935160873414	-0.418414539063277	0.397654651600923	0.774569227267419
Merged-chr12-100426468-4	chr12	100425959	100426959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	94363.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	6.36257070456518	6.2959943150836	6.28309562628262	5.80044636950253	5.94870530245683	5.71498346694693	-0.822578460976619	0.00494718197041007	0.0607863433836209
Merged-chr15-9140434-4	chr15	9139912	9140912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013787)	promoter-TSS (NM_013787)	42.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	6.24971182228591	6.55983319235193	6.09408925292209	6.30385957228865	6.25116176087831	5.96262455982844	-0.227715293828505	0.45836238013206	0.812981239724864
Merged-chr16-45110788-3	chr16	45110348	45111348	+	707.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026439, intron 3 of 7)	RMER5|LTR|ERV1	16837.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	3.32581596137891	3.28555226520878	3.29209323791684	3.03558415366855	2.84033410845941	3.25239342658791	-1.13635134869094	0.0948204723801656	0.410500617367785
Merged-chr19-46760905-3	chr19	46760414	46761414	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-695.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	7.69766403841598	8.16634907294044	7.73598727201527	7.60398847246934	7.7742594894513	7.46183816970751	-0.380507102617518	0.13643085898645	0.493475468965041
Merged-chr4-95871366-3	chr4	95870863	95871863	+	745.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	95672.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	2.51895543682814	2.34862719090974	2.2665744163082	2.56681099107797	2.48237715176088	2.67091865578228	1.13537047816669	0.179757969884282	1
Merged-chr6-125594979-4	chr6	125594486	125595486	+	927.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 10 of 51)	MTD|LTR|ERVL-MaLR	42038.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	3.54117860718844	3.40073558876786	3.6270245190314	3.30898386076842	3.46263015449818	3.48802259442355	-0.370674871903706	0.52765935749662	0.850108008834301
Merged-chr10-85185965-4	chr10	85185451	85186451	+	871.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-897.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	5.51219369197094	5.75995210935892	5.63767787059145	5.60670872891311	5.90573493803263	5.36917821762768	0.0388720350814671	0.910834614144453	0.979969158480567
Merged-chr8-126917702-3	chr8	126917197	126918197	+	970.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28224.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	4.87243790371352	4.59743934848524	4.58490672331733	4.01935008491651	3.99498553597643	4.31096078484246	-1.56800183073765	0.00077882170325999	0.0148838301067656
Merged-chr17-86964765-4	chr17	86964279	86965279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	1668.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.13177728201067	4.93376968357074	4.71423903080412	5.47495935818445	5.30685141842538	5.33320887408874	0.868972702896471	0.0213482730766572	0.168597865049591
Merged-chr12-112580092-2	chr12	112579592	112580592	+	587.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8692.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	3.00443447120864	2.80111082561777	3.18092187946248	2.96824493507475	2.89166103671548	2.96725232817564	-0.269567831608952	0.699137928116526	0.920515737149593
Merged-chr3-154540349-3	chr3	154539823	154540823	+	923.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56388.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	2.64000037113998	2.63729690779944	3.0058464973765	2.84118986797158	2.75488965335899	2.6574144882034	-0.0590596462793624	0.93804136589539	0.98625187415669
Merged-chr10-81403424-2	chr10	81402924	81403924	+	811.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 9 of 10)	exon (NM_008688, exon 9 of 10)	-6151.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	3.89818445250234	3.9815499042437	4.25106045119888	3.89302094240417	3.78462031195416	3.96091011985822	-0.509657796695341	0.320474638034949	0.714329206729224
Merged-chr17-36846942-2	chr17	36846450	36847450	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	9804.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	3.76105760092451	3.89623138008442	3.98976704627479	3.21601918813078	3.02891988526877	3.92446190064974	-1.30946704472896	0.272792802901602	0.669951714189667
Merged-chr13-55016163-2	chr13	55015663	55016663	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4656.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	4.17669761375573	4.61057373512507	4.61378663576123	4.49424847648006	4.44637621708651	4.67925842092861	0.143560456689306	0.751936998368834	0.938030338790992
Merged-chr19-5954728-2	chr19	5954228	5955228	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 5 of 17)	intron (NM_001164057, intron 5 of 17)	9478.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	3.13038734620904	3.08011974376969	3.27694116227842	3.28825704560626	3.04817970646701	3.50552453646719	0.517086445082968	0.429813968770337	0.795863007201232
Merged-chr3-69006517-3	chr3	69006016	69007016	+	749.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356976, intron 2 of 23)	intron (NM_001356976, intron 2 of 23)	1778.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	5.69851617218216	5.89232719740909	5.62734864805776	5.69066480418348	5.85425077803222	5.89622241009972	0.114164047789576	0.716094071263061	0.926567177471454
Merged-chr9-95639030-4	chr9	95638531	95639531	+	930.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1403.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	6.6704655127671	7.54910447753026	6.87790488475364	7.39704741112178	7.96280509322647	6.85731845835766	0.579354499816055	0.334425008577533	0.724940370293588
Merged-chr6-113638494-4	chr6	113638013	113639013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172161)	promoter-TSS (NM_172161)	46.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.24964289962216	7.34556219312258	6.83677361299108	7.19158165841464	7.27289774721132	6.73049400472302	-0.111823904576924	0.699653344940013	0.920673966305366
Merged-chr8-13644381-4	chr8	13643935	13644935	+	961.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	33152.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.26896372292805	6.42571447584198	6.38583723401361	5.96635932349423	6.03076046426784	6.25548157742779	-0.469412907233273	0.099107541651435	0.419759234012969
Merged-chr11-89035732-4	chr11	89035220	89036220	+	944.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25028.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	2.8848844008887	2.94278896512734	3.03980527797773	3.28405064928005	3.11228340959466	3.17158834415447	1.07431513107471	0.105570381521969	0.433670708658438
Merged-chr1-157046991-3	chr1	157046447	157047447	+	784.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61703.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.41205844473406	4.40524447221785	4.54979810712732	3.91453940188982	3.8544648570382	4.24681228718347	-1.26311500758676	0.00937401504141802	0.0961869304018231
Merged-chr13-96435908-4	chr13	96435408	96436408	+	907.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001042714, exon 8 of 14)	exon (NM_001042714, exon 8 of 14)	35252.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	3.29816050192558	3.41516905734736	3.35531030738114	3.19965761211551	3.47302594895006	3.19327552621938	-0.208532558600549	0.739673612144114	0.934245371298156
Merged-chr9-123563786-4	chr9	123563293	123564293	+	974.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 7 of 19)	intron (NM_001357485, intron 7 of 19)	34040.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	4.68574087655395	4.55438300961458	4.8162211545936	4.49430520068096	4.61683599325505	5.07872973244423	0.13767555850724	0.753337598688257	0.938549578325581
Merged-chr1-131462802-3	chr1	131462298	131463298	+	700.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	64563.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.25169645722736	4.26224794057791	4.0539230276989	4.21349330471993	3.83542874160781	4.55307935334579	0.0758513117843091	0.885205101065292	0.973549591486895
Merged-chr7-19748092-2	chr7	19747592	19748592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	1481.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	3.89009727186352	3.47736535191676	3.74693316987636	4.03655842166563	3.94953004642186	3.92058585578661	0.80534952664703	0.139089953340375	0.49825197337463
Merged-chr15-64052950-2	chr15	64052450	64053450	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	6814.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.71449478250023	4.67614727108052	5.03785105137971	5.00233345029664	4.74767045055763	5.25516351931304	0.435129838152109	0.294539631036565	0.691341427906643
Merged-chr9-57765966-4	chr9	57765451	57766451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007713)	promoter-TSS (NM_007713)	-91.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	8.3463095872407	8.66670392522461	8.2266364495874	8.24323836934465	8.41646322091956	8.32023644973336	-0.142903780324029	0.532424304846397	0.851971173271146
Merged-chr6-147092152-2	chr6	147091652	147092652	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081237, exon 1 of 3)	exon (NM_001081237, exon 1 of 3)	1077.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	3.81045315525185	3.81694909515842	3.85660674843358	3.5206096675956	3.25975575371565	3.62306579870279	-1.28743539660128	0.0264376882509201	0.193170632594184
Merged-chr18-53255523-4	chr18	53255037	53256037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	9875.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.4403954936917	8.45557784842635	8.0077590103074	8.12621920335643	8.27062811894649	7.74157675696753	-0.35120192375088	0.175849223062508	0.555855712100324
Merged-chr3-132756429-4	chr3	132755919	132756919	+	918.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	72275.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	5.39528204255528	5.58486254515007	5.19222163702581	5.18540834047979	5.41181895718665	5.00324786858586	-0.370544908393347	0.32148256102815	0.714882390432811
Merged-chr3-109439437-3	chr3	109438928	109439928	+	837.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	98745.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.01462625753802	4.25612482221677	4.23245469464717	3.91380575617237	3.71554951544158	3.82193590031724	-1.077402666289	0.0346032410120826	0.228038186628083
Merged-chr9-118638857-4	chr9	118638372	118639372	+	965.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	32163.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.2603027005856	5.03765289019043	5.22361350191637	5.32029470552097	5.30805737778165	5.25522619847157	0.248274874943311	0.478836641038155	0.823902254052681
Merged-chr2-130467613-2	chr2	130467113	130468113	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	MTD|LTR|ERVL-MaLR	17335.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	2.3483165827975	2.43833173005797	2.64105158477696	2.62124761008627	2.67808124403594	2.83399509962867	1.38291258371962	0.0865389373554286	1
Merged-chr18-12178463-3	chr18	12177955	12178955	+	919.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029623, intron 5 of 19)	intron (NM_029623, intron 5 of 19)	9725.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	2.5692553675554	2.83920387764364	2.63036074443135	3.05465115102634	2.69582615004334	3.13290427224908	1.41837665300814	0.0724925475078145	0.353686255109869
Merged-chr7-83884383-4	chr7	83883860	83884860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030705)	promoter-TSS (NM_030705)	-19.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	7.92718100667509	7.98197197405127	7.90784524334245	7.90058052975815	7.87973329464198	8.10198667365165	0.0276084022861512	0.897881018371798	0.976179002491449
Merged-chr12-116461382-4	chr12	116460886	116461886	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-24334.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	5.38116402723085	5.71236426565728	5.87740878246497	5.6641321327498	5.80774785314856	5.86845304390432	0.213377484721309	0.522246141771403	0.847506520484364
Merged-chr8-71475894-2	chr8	71475394	71476394	+	556.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164679)	TTS (NM_001164679)	6700.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	4.75899708764965	4.66056704330883	4.72467043689634	4.73251885024099	4.33909158699306	4.86342979807942	-0.150514858693562	0.728443972765201	0.930478966998914
Merged-chr7-100460896-3	chr7	100460386	100461386	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017985, intron 32 of 32)	ORR1E|LTR|ERVL-MaLR	-12105.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	7.07742947140229	7.15367142341057	6.9769676078587	6.49736557547767	6.55217884304859	6.76185413408205	-0.736465782243335	0.00366387089624106	0.0487703358717687
Merged-chr14-32163618-2	chr14	32163118	32164118	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 1 of 9)	URR1B|DNA|hAT-Charlie	-1968.0	NM_001284319	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.18864931775287	6.14838133476123	6.43690842979645	6.71963300477508	6.83640191838918	6.23819005485569	0.615162298430022	0.0423428873692261	0.257869206778787
Merged-chr8-84782887-3	chr8	84782388	84783388	+	656.444458	f0_balb.idr|f1_balb.idr	intron (NM_001081982, intron 1 of 9)	intron (NM_001081982, intron 1 of 9)	-8519.0	NM_001297601	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	3.37464303241394	3.6254748869416	3.94706569012984	2.94049868511399	2.74336137643502	3.45247568755354	-2.16693757165827	0.176844434788957	0.557467887031723
Merged-chr1-183623480-4	chr1	183623012	183624012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-125465.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	6.14476457871656	6.13855530926872	5.97224812788673	7.10719038293922	7.27498933227835	6.53822372404079	1.47976857354942	1.5776249173896e-06	8.06333010602912e-05
Merged-chr4-94614478-4	chr4	94613990	94614990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290568)	promoter-TSS (NM_001290568)	-1.0	NM_001290568	67694.0	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	4.88812296032129	4.93443507721608	4.94102039142861	4.78211665435609	4.73917051091196	4.86101034269592	-0.293024401777769	0.443620642450363	0.803884349333946
Merged-chr13-12058614-6	chr13	12058114	12059114	+	999.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	48331.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	4.61121227577473	4.34147432846748	4.5412589403277	4.2739691842722	4.18114201721789	4.40076492948505	-0.57448596020363	0.201141113895793	0.590667012706586
Merged-chr16-11317557-4	chr16	11317061	11318061	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011608, intron 2 of 2)	L1MA9|LINE|L1	3752.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	4.10273390379013	4.18250285786535	4.30385904612371	4.14899678291649	3.77879603499419	4.0561494354932	-0.571770641265347	0.252724984622621	0.650078537173211
Merged-chr10-81350570-4	chr10	81350066	81351066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010440)	promoter-TSS (NM_010440)	-109.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	6.8981158111741	6.71797527714236	6.64159338669059	6.87068178345738	6.77219177920726	6.42596560493888	-0.0762109578536403	0.781953827373578	0.94634558043998
Merged-chr3-59260947-4	chr3	59260468	59261468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	2017.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	5.90349623745004	6.34671096134067	5.81258856332783	6.16101345722212	6.39909461865028	6.36657537356428	0.433413711822992	0.173152507563316	0.551916379659197
Merged-chr3-105687612-4	chr3	105687113	105688113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-42.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	7.12118994255624	7.32918482669504	7.01388530392673	6.92332722962252	7.04403276952864	6.82504345794998	-0.344833802190219	0.171521644887469	0.549640800577546
Merged-chr11-70655517-4	chr11	70655024	70656024	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-874.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	8.32997807316858	8.31982114063737	8.13479693106333	8.40479661732813	8.68516649558287	8.24462561716638	0.274711407620501	0.230997106101287	0.626779077951996
Merged-chr7-102266156-2	chr7	102265656	102266656	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1668.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	5.85832662828556	6.06934017296992	5.91402874375432	5.96311859112637	6.04762012069985	5.50291736944222	-0.13626504718121	0.679285475679831	0.913693374830142
Merged-chr12-75818278-4	chr12	75817795	75818795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-23.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	6.04775114597162	6.04000692189025	5.60596192651254	5.71371089377222	5.41357753761816	5.24708415268022	-0.814003870648897	0.0205843705493657	0.164485192036073
Merged-chr7-43670285-4	chr7	43669779	43670779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1752.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	8.05515233159718	7.86368188652892	7.92468869481035	8.39116084712169	8.52354587053004	8.01191926939773	0.5396604430006	0.0236223302335804	0.180248391812976
Merged-chr2-167808004-2	chr2	167807504	167808504	+	573.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116827.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	2.7472722706175	2.90355338385473	2.99306657460155	2.98991518184391	2.89677870864618	3.12199353577123	0.571866930055829	0.411552390196362	0.783993055982259
Merged-chr6-83647232-3	chr6	83646731	83647731	+	788.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	8885.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.79815937508043	6.24854465276692	6.27819731375819	5.91118883459537	5.8978447129422	5.96144827831379	-0.346141571499845	0.271480546539803	0.668838553813108
Merged-chr1-39535682-4	chr1	39535174	39536174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028043)	promoter-TSS (NM_028043)	-27.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	6.55396764112336	6.7779205090788	6.46662876027074	6.91166701492834	6.78749752434488	6.56243530974585	0.244016650926859	0.371700622870794	0.755815136565724
Merged-chr12-32017776-4	chr12	32017272	32018272	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	43507.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	2.94308322292171	3.00647230563634	3.31825126938653	3.10619425464482	3.51793613137825	3.33482620087904	1.01094010113821	0.136620864911754	0.493743438480595
Merged-chr5-147742724-4	chr5	147742243	147743243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16755.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	4.29114215121611	4.08513898617634	4.44310526278041	4.07256231134348	3.79603742770026	4.07855713103544	-0.842777715306241	0.0923161481617849	0.404737931465454
Merged-chr13-90057859-4	chr13	90057321	90058321	+	978.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31787.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	5.06614670787007	5.00934560410549	4.81247720106746	5.49206714702043	5.93423965724487	5.15898143817941	1.21069409058122	0.00259181026744172	0.0376958195268016
Merged-chr8-88669779-2	chr8	88669275	88670275	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	22428.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	5.03525350377384	4.53243316320085	5.09673497490832	5.01230085359985	4.74549312787777	4.64590724789615	-0.206491158217486	0.634978473864943	0.896393504194572
Merged-chr2-167803623-2	chr2	167803123	167804123	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112446.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.26879605743585	7.1553411679571	7.20908341164415	7.28704555197352	7.70429415125445	7.21795525696385	0.32756373859381	0.204692107508213	0.595338437555822
Merged-chr1-151997784-4	chr1	151997277	151998277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	92543.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.92042743660342	4.86251542608625	4.95747464223303	4.98033871995205	4.7512206819892	4.49579322561163	-0.328002700020129	0.422795994387985	0.791548847368906
Merged-chr11-8760065-4	chr11	8759585	8760585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-95550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.72485047830088	4.9536814328195	4.71208613733504	5.11572996871886	5.08365613906939	4.93661192046047	0.532103530077896	0.168718052145846	0.545394813687464
Merged-chr11-59555644-2	chr11	59555144	59556144	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12958.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.46255070856343	6.42484091701093	6.30124570086599	6.03691668127237	6.14334642492484	6.06431930887532	-0.53225517815835	0.0549465426323623	0.301168767510923
Merged-chr12-85452387-2	chr12	85451922	85452922	+	763.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21468.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.56111237490699	3.67090632143956	3.763915348858	3.679534212409	3.792756190407	3.45213021170939	-0.0196514681937976	0.972367601269539	0.993868590220018
Merged-chr17-71178259-2	chr17	71177759	71178759	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-5273.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.40726465640782	7.65757295133241	7.43268972513096	7.1873238777105	7.28107366107682	7.32809954839766	-0.357871071571614	0.127367457571237	0.477086135301497
Merged-chr8-122575375-3	chr8	122574900	122575900	+	708.904724	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009698, intron 3 of 4)	intron (NM_009698, intron 3 of 4)	1507.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	3.47448455529334	3.63752324442	3.99030749568139	3.68246928311007	3.64324954144565	3.82764196532938	0.0231063458624728	0.96767896258995	0.992581088872982
Merged-chr16-22398922-4	chr16	22398442	22399442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 9 of 12)	intron (NM_001358428, intron 9 of 12)	39426.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	7.2721882587311	7.22814734357129	7.16928254123418	7.34301148786787	7.64813993437606	7.33364115896163	0.343384616038076	0.154647532490356	0.52390421792532
Merged-chr8-108691291-2	chr8	108690791	108691791	+	989.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23353.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.59567293971174	4.27643896888126	4.48264108338366	5.59051330414261	5.63348402427491	5.65189274883359	2.5361179545303	1.52365564612429e-10	1.9655866512048e-08
Merged-chr1-40322035-4	chr1	40321529	40322529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2560.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	4.73597600310618	5.00306692493179	4.65901093421003	4.78169931494708	4.57355948303415	4.8429950051738	-0.199687645079983	0.628771443506529	0.893895577769845
Merged-chr12-33433996-4	chr12	33433507	33434507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172253, intron 2 of 3)	intron (NM_172253, intron 2 of 3)	4383.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	7.25541620232939	8.04750230149117	7.57202716221951	7.64519161436441	7.86277291140921	7.5292325649501	0.0247567867126402	0.932089390064311	0.985042153660649
Merged-chr5-88675441-6	chr5	88674911	88675911	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178700, intron 1 of 9)	CpG	169.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	6.70926895831466	6.34234602244852	6.24328596362986	6.50452131594492	5.96732189878952	5.67041678864662	-0.5776770655801	0.105691003208636	0.433859743215796
Merged-chr9-90213401-2	chr9	90212901	90213901	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	50423.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	2.872566374991	2.90973235125196	3.2931600026717	3.46939771091544	3.11293018925239	3.36480783819419	1.24605341882189	0.0735531637690771	0.356389965813764
Merged-chr7-4865256-3	chr7	4864761	4865761	+	952.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026158, intron 1 of 5)	B2_Mm2|SINE|B2	918.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	4.1193589794566	3.59739367333612	3.94628746414427	4.93795304474472	4.7406897172866	4.37716699149673	2.16910571714599	5.17293871259687e-05	0.00162918199999152
Merged-chr4-55622885-2	chr4	55622385	55623385	+	843.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90410.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.30044033034034	4.99936320615275	5.40509389858568	5.06140925047175	5.24120586087373	5.72344533896741	0.243908938814218	0.53833057710582	0.855080856348593
Merged-chr2-83725556-3	chr2	83725047	83726047	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1150.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.96063984729734	6.33158556135616	5.92030916320045	6.28611775488683	6.73293145589751	6.4717471825505	0.696879723353059	0.0257307370886393	0.190179920847848
Merged-chr7-31059676-2	chr7	31059176	31060176	+	989.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-259.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	2.66432521759349	2.39042884852211	2.76862119214443	2.66156294378037	2.25154273324522	2.46587696705757	-0.84331125126701	0.334024335448206	1
Merged-chr4-53105320-2	chr4	53104820	53105820	+	893.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	54575.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.4932037264216	3.25112172852529	3.56956643635995	3.16230069000799	3.46574748447323	3.06849147769104	-0.73660035025698	0.273430247614923	0.670659339634344
Merged-chr7-116459297-4	chr7	116458766	116459766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15808.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.61270053937209	6.67163788349936	6.4349263280403	6.6380542667335	6.52594272098594	6.18360159911444	-0.175709308078779	0.536152545798531	0.853919704287654
Merged-chr1-170844642-3	chr1	170844162	170845162	+	879.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 4 of 15)	L1MC4|LINE|L1	23109.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	4.12772250300563	4.21840422726901	4.28028726166973	4.24682448905839	4.4000879719691	4.21120747791567	0.24167617831946	0.598706025027853	0.880808927175713
Merged-chr9-41159137-3	chr9	41158623	41159623	+	753.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1061.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.23789333569193	4.18753549755979	4.72211024683251	5.08379471354773	4.8489856077451	4.96697776110445	1.38022528303962	0.00186586356344288	0.029276782083152
Merged-chr12-14137285-2	chr12	14136785	14137785	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14753.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	1.75261200297934	1.88986951151495	1.77696437424752	2.10063484054095	1.91806594748521	2.13235980637663	2.11249091503581	0.0463634831037303	1
Merged-chr11-53891844-4	chr11	53891342	53892342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011396)	promoter-TSS (NM_011396)	-139.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	7.15578562108851	7.26756454948312	7.38914396881331	7.11952095004164	7.23212685595692	7.18903551081481	-0.13032992853351	0.580511800076117	0.872884157869997
Merged-chr14-55748649-2	chr14	55748149	55749149	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026403, intron 2 of 9)	intron (NM_026403, intron 2 of 9)	2956.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	3.9118562521931	3.65750894631007	4.00544210138318	4.10610096044056	4.00878262773093	4.2095170598484	0.74105077473354	0.147810363379494	0.513099278826115
Merged-chr8-84689799-1	chr8	84689299	84690299	+	583.0	f1_c57bl6.idr	exon (NM_001164560, exon 2 of 17)	exon (NM_001164560, exon 2 of 17)	552.0	NM_198020	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	4.9652122920425	4.68503023131354	4.84834670354062	4.96645181768053	4.91945183052601	4.91385761873635	0.213885880363218	0.58059829867609	0.872895893689405
Merged-chr7-122231359-4	chr7	122230867	122231867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HERVL74-int|LTR|ERVL	11871.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	6.49727220955766	6.48431674586726	6.46671804606182	6.2817318862869	6.5477714217351	6.72319462444143	0.0669834264156478	0.808949642980191	0.954721853010197
Merged-chr5-140829427-5	chr5	140828956	140829956	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	ID_B1|SINE|B4	975.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	6.18660504271975	6.88186971371881	6.77092101630455	6.21618347120346	6.40303360060043	6.38329290944748	-0.500226942951123	0.113326859773078	0.449697236301124
Merged-chr7-110014464-4	chr7	110013967	110014967	+	757.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-3784.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	4.25470569255061	3.72233340414963	4.41750971819653	4.11708411229237	4.08402672984542	4.59600421931424	0.325263542607504	0.555593822314017	0.863289501518253
Merged-chr8-69193474-4	chr8	69192986	69193986	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15560.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	5.09874165297003	5.38636251341782	5.39604991140672	5.66307687964274	5.52268790547634	5.9187656911895	0.770997448663611	0.027524110675915	0.197845557453629
Merged-chr11-99386064-4	chr11	99385544	99386544	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010660, exon 7 of 8)	exon (NM_010660, exon 7 of 8)	3320.0	NM_010660	16661.0	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	6.36591292195479	6.36221346552774	6.54852733124749	6.26645641924382	5.97821847627977	6.45514324118676	-0.311293927373213	0.291306748031071	0.689020066615668
Merged-chr2-128703045-2	chr2	128702545	128703545	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	MTD|LTR|ERVL-MaLR	4130.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.20371610440723	5.19841340198414	5.07498147916807	5.31337204018853	4.99039963643266	5.10482120708749	-0.0516797705857692	0.887633108864309	0.973836995667151
Merged-chr12-80116949-2	chr12	80116452	80117452	+	762.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3939.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.17308868269996	4.94499909520878	5.23788286744064	5.22366276401445	5.4309285857886	5.20458007673039	0.369241255547734	0.308630490471016	0.70459916731452
Merged-chr12-80839846-4	chr12	80839355	80840355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	49323.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.86016783027435	6.78145493905594	6.79834631108239	6.81635009420843	7.18461358549277	6.60997590317071	0.144332192385005	0.604794621649814	0.883226183914895
Merged-chr2-116975206-4	chr2	116974732	116975732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75080.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	8.18597207307963	8.1876555843588	7.82294770132424	8.0340177040028	8.27814223866044	8.03829244241289	0.0603371417510275	0.796449707546617	0.951430675491237
Merged-chr14-54398054-4	chr14	54397546	54398546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	11426.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	7.31359480686762	7.21809728259431	7.35139337176488	7.43183663839612	7.19704178871819	6.89741631858207	-0.136915446465197	0.596454755415354	0.879914064265073
Merged-chr1-34564561-4	chr1	34564070	34565070	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3627.0	NM_009356	21756.0	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	2.93228042163612	3.19925839035992	3.1698663667047	3.14571721171607	2.90035583862332	3.18490769589661	-0.120206520885799	0.859410878729839	0.967303696854362
Merged-chr2-167376344-4	chr2	167375840	167376840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27162.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.74636282480409	7.70650682664865	7.35146949021141	7.40390267743228	7.87267129773898	7.41994337671886	-0.0378200425489523	0.887543285591571	0.973836995667151
Merged-chr19-6859011-2	chr19	6858511	6859511	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-800.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	6.30527470053681	6.35548899507956	6.23919045562	6.79035537669611	7.04184017276656	6.40372562282302	0.770084073344498	0.0090339420641313	0.0938269683812471
Merged-chr11-74484175-3	chr11	74483687	74484687	+	742.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	105971.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.89398546524749	3.59739705766293	3.65992197296896	3.5627199056991	3.49568640513743	3.67764942251687	-0.521606733694295	0.352898857328118	0.740356213013919
Merged-chr10-95503673-2	chr10	95503173	95504173	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31A_MM|LTR|ERVK	-1724.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	3.7008203489759	3.16595991373861	3.39728251303598	3.36366093742555	3.45577724325524	3.16944344954026	-0.391963470554901	0.552623969385196	0.861817968703681
Merged-chr19-12472117-4	chr19	12471616	12472616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 8 of 8)	intron (NM_172442, intron 8 of 8)	11337.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	6.96275856567659	6.95099385912268	6.8922329245685	6.46621308695483	6.44808224213923	6.79208222344995	-0.580661352126542	0.0265124301111825	0.193519655172895
Merged-chr9-108761739-3	chr9	108761262	108762262	+	766.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34232.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	2.89432366048425	2.75905037077081	2.6127372383876	2.78229902158728	2.7062695840756	2.99276713005362	0.326120890607392	0.664808319363341	0.907721942545399
Merged-chr2-92482787-2	chr2	92482287	92483287	+	917.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22269.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	4.44060933599075	4.48110240033932	4.21201553423556	4.20457644845228	3.93466988472588	4.41353979932928	-0.54600253997493	0.260601913308573	0.658045689278249
Merged-chr1-134093167-4	chr1	134092708	134093708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14053.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.57284684050357	8.63194721306657	8.39846688063338	8.32248223998494	8.71013380837944	8.13019602418934	-0.168157578536652	0.492957275069698	0.831208279358962
Merged-chr8-84147941-4	chr8	84147439	84148439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145970)	promoter-TSS (NM_145970)	-99.0	NM_001163752	74666.0	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	5.16926230747787	5.46911933193927	5.18611507207656	5.29622424041636	5.01357395779701	5.21727627794653	-0.231120189458301	0.528335962720882	0.85053360857083
Merged-chr11-98944593-2	chr11	98944093	98945093	+	937.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	ID_B1|SINE|B4	4882.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.25697077080374	5.22232300209608	5.20287494013782	5.82224172528979	5.71280493973827	5.86104094039889	1.07615697153767	0.00096965478109349	0.0175933351559588
Merged-chr17-56583274-3	chr17	56582759	56583759	+	832.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029979, intron 1 of 20)	intron (NM_001029979, intron 1 of 20)	1326.0	NM_001029979	224902.0	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	6.1845256870816	6.20608293365313	5.93948946032701	6.23931288931802	6.17939783042427	5.54668824941484	-0.140841067305005	0.679034602286207	0.913577453465555
Merged-chr17-24718324-1	chr17	24717824	24718824	+	586.0	f1_c57bl6.idr	promoter-TSS (NM_026205)	promoter-TSS (NM_026205)	-267.0	NM_026205	67504.0	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	2.61233041126913	2.44644063018026	2.59897378073523	2.56636084694874	2.28156992862389	2.34578703048679	-0.930944794905245	0.268306293300749	1
Merged-chr8-94038005-2	chr8	94037505	94038505	+	634.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026623)	promoter-TSS (NM_026623)	807.0	NM_001093757	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	4.85280125047605	5.20382678457312	5.24971611466635	5.28766403355008	5.03169134119399	4.7322561427833	-0.137340722842108	0.736264030936204	0.933099240232035
Merged-chr18-65681505-1	chr18	65681005	65682005	+	595.0	f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-16763.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.65806599823971	5.39480643086829	5.53743790146862	5.34061140147005	5.35085603136494	5.33239734741877	-0.37176790169223	0.268168631124835	0.665308311477243
Merged-chr14-18271949-2	chr14	18271447	18272447	+	834.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025586)	promoter-TSS (NM_025586)	811.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	5.62710753479067	6.11353631681923	5.71240999250507	5.70054506785479	5.87975210631116	5.99504162496484	0.0290587710590216	0.930639073685116	0.984634955091756
Merged-chr6-15845499-2	chr6	15844999	15845999	+	986.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	124838.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.54026431653385	4.43149179207598	4.50117432494503	4.54153116728309	4.95392317728545	4.52558411062729	0.511771161737708	0.241906606522469	0.638961491826601
Merged-chr11-106483140-2	chr11	106482640	106483640	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	L1MB8|LINE|L1	4656.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	2.87319477781515	3.17659171146616	3.22721020093158	3.02650344298832	3.30284059348756	3.35245570433222	0.570499362816283	0.402893543610242	0.778365878954155
Merged-chr2-145903283-4	chr2	145902794	145903794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141965)	promoter-TSS (NM_001141965)	53.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	6.73361422612132	6.52035177853723	6.59586403309951	6.79662356707121	6.51333000291802	6.22988284524272	-0.124558174960641	0.667684373375	0.908813236401378
Merged-chr10-53378305-2	chr10	53377805	53378805	+	700.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	1546.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	4.16388685613317	4.01253303146236	4.50651516723892	4.73301346146162	4.43171797062889	4.532689084255	0.87655166980192	0.0627887095086056	0.325880921955592
Merged-chr2-32917728-4	chr2	32917236	32918236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	41602.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	5.51392053951848	5.47037408853509	5.61161477540091	4.4679195714168	4.44915905449166	4.76163252915694	-2.14484099857828	3.77223003229703e-08	3.00939325529599e-06
Merged-chr19-4067267-2	chr19	4066767	4067767	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7820.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	4.9136658482668	4.77871683554429	4.93141712515369	4.40270091143643	4.2577030957769	5.06001641685797	-0.611971870093396	0.195198277223765	0.582885610090219
Merged-chr1-85838236-4	chr1	85837744	85838744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	44227.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	6.73744672745659	7.0348203921434	6.58616495154981	6.6361854386505	6.98220387026004	6.53699498359357	-0.0991944406516006	0.733345023282037	0.932052212786391
Merged-chr5-21717385-4	chr5	21716849	21717849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-15727.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	3.27250924740455	3.3620076475058	3.68462577596385	3.4733596659742	3.21349855450283	3.50277385523848	-0.175564282339938	0.777747731507293	0.945251190347279
Merged-chr7-102024159-2	chr7	102023659	102024659	+	946.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-6004.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	6.95154851691328	6.5148603352501	6.97693203069391	6.61903149492526	6.50054105239656	6.84537476205981	-0.269397463508741	0.347558895340363	0.735652974422286
Merged-chr7-118487171-3	chr7	118486707	118487707	+	905.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4768.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.99877533471018	6.37750946729632	6.34985599311614	6.34979396539456	6.68630915015241	6.35191158368684	0.378961975772984	0.205819285005516	0.596447652812717
Merged-chr4-59864890-3	chr4	59864393	59865393	+	956.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50163.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.89119204760978	6.22377212854941	5.83210163348441	5.67970506259746	5.6630741788931	5.942038393375	-0.433085311775981	0.178124881438011	0.559214274626246
Merged-chr12-110822563-4	chr12	110822063	110823063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	18376.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	6.21707651778553	6.37573469621856	6.06647270616414	6.16500334490076	6.16484326969519	6.0584466976702	-0.169376299641198	0.555369074309398	0.86322787018872
Merged-chr17-46892169-2	chr17	46891669	46892669	+	665.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178385, exon 1 of 1)	3' UTR (NM_178385, exon 1 of 1)	1548.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	6.04635838692976	5.8334372597701	5.59573213768337	5.73680011470208	5.57360074480528	5.15803479564235	-0.590999821685309	0.101861121596963	0.425767120572546
Merged-chr7-126194340-4	chr7	126193838	126194838	+	924.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	6163.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	3.40976616720003	3.297003689154	3.24693383498332	3.19158085203443	3.13009759305413	3.26113120875277	-0.544022911914274	0.381906015444105	0.763555089938803
Merged-chr4-11007794-4	chr4	11007308	11008308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-189.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	8.29037341626547	8.46013091353224	8.20189482790452	8.34153072684193	8.27629335663029	8.15665072409548	-0.0881929183568326	0.679462868340843	0.913863725020095
Merged-chr3-137948775-1	chr3	137948275	137949275	+	757.0	f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	30220.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	5.59602863529088	5.21442638932271	5.67020034230068	5.3036594590993	5.53790964913653	5.62881858924565	-0.0118918696076855	0.973356227779049	0.994035429262205
Merged-chr2-69719564-4	chr2	69719064	69720064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-3524.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	5.74549277676595	5.79686999359063	6.24789654737582	5.74770527624286	5.87005595385975	6.27048647785861	0.0599877489483625	0.861358329126482	0.96779377844034
Merged-chr14-10129848-4	chr14	10129331	10130331	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	245736.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.42063662677707	2.48893209539626	2.76076050715297	2.47194369582129	2.49800060268946	2.53066479839798	-0.348341836187786	0.662824804238948	1
Merged-chr15-78596636-2	chr15	78596136	78597136	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	-411.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	6.02164067667961	5.39713431704079	5.94153463536757	6.07204420418062	6.1413599835649	6.13466960569532	0.53071176666799	0.113887549492889	0.450859089500984
Merged-chr8-83716742-2	chr8	83716242	83717242	+	610.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197982, intron 1 of 10)	intron (NM_197982, intron 1 of 10)	1565.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	3.66250083706755	3.84590050193092	3.80928697629561	3.74270081210317	3.92382831657514	4.11329126851976	0.490482138136725	0.354309819475266	0.741540142840202
Merged-chr8-57463482-2	chr8	57462982	57463982	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7559.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	3.61836932581512	3.65486019932347	3.89204346407704	3.59795020685665	3.65707131807408	3.76777482096111	-0.157717177798154	0.773102265051736	0.943981747443949
Merged-chr7-104370835-2	chr7	104370330	104371330	+	598.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12184.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.11364907890369	6.20732049926942	6.27361658118574	5.89473445206411	6.1512037247587	5.89451563333059	-0.340835434744457	0.248281387553141	0.645445615702094
Merged-chr9-96396643-4	chr9	96396173	96397173	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32242.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.57060286813814	4.34899002069577	4.99471489350224	5.12951665385795	4.95248594567793	4.99143429122577	0.845461560590056	0.0492561063473917	0.28212311030067
Merged-chr10-60286761-4	chr10	60286239	60287239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2278.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.97146027519677	6.18128828042535	5.98381259437988	6.47898353548633	6.66366802231528	6.24904607613878	0.717307582944815	0.0145639677497747	0.129947651113937
Merged-chr3-58374360-2	chr3	58373860	58374860	+	658.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40360.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	3.24280022392619	3.34327463614351	3.52259671524015	3.50868144119394	3.5403900803254	3.6439923806173	0.731375266122926	0.213123802424047	0.605842142465242
Merged-chr2-30952944-4	chr2	30952442	30953442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133673)	promoter-TSS (NM_133673)	-59.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	6.06416277283682	6.16125641205499	6.41225246583555	6.1761810100006	5.96196243037424	6.43664437247243	-0.0310806561593662	0.91974549254247	0.982080783809915
Merged-chr9-113805520-4	chr9	113805021	113806021	+	900.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7065.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.29094753455804	4.28263668307013	4.15017420111918	4.45306012048208	4.02870258762737	4.35655799924013	0.10275954911127	0.829883584332522	0.960134151531511
Merged-chr7-73560881-2	chr7	73560381	73561381	+	740.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2486.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	3.17844573422874	3.12763003584617	3.38418859037771	3.07420954731479	3.35532496427924	3.605480501405	0.50969231606292	0.436157434605989	0.799461119181469
Merged-chr6-88067913-4	chr6	88067422	88068422	+	988.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-16551.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	3.80841956141076	3.51424605417187	3.76153745022431	3.64936905039385	3.72735059617776	3.83072207727561	0.121597175664759	0.824527186206199	0.958596193929081
Merged-chr17-46880004-4	chr17	46879498	46880498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10623.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	5.90363817878247	5.77598341686568	5.31726796099133	5.1018179583314	5.50051688411394	5.20980116505462	-0.774449268183702	0.0398880662786259	0.248530976667493
Merged-chr2-168979927-4	chr2	168979449	168980449	+	838.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	1680.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	5.54279542582479	6.01453494339519	5.56441089320496	5.979644306912	6.48452787807776	5.39902219851943	0.543501995130184	0.186164114813985	0.570693868232769
Merged-chr10-78009839-4	chr10	78009350	78010350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008826)	promoter-TSS (NM_008826)	-43.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	7.28128615150327	7.46111269785085	7.24801561798976	7.10220393301893	7.41601884699501	7.39461460141206	-0.0361652981601253	0.882633568559309	0.97322373493158
Merged-chr5-138754957-4	chr5	138754421	138755421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-160.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	4.44892858912404	4.02910032820978	4.67594264678849	3.78789446837218	3.75142214741933	3.95717885050745	-1.67189982712813	0.00176217724911165	0.0280293444531824
Merged-chr11-70020896-4	chr11	70020394	70021394	+	969.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	2289.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	3.91493438549308	4.16338810181279	4.01570531332436	3.99894051465554	4.12659816010337	4.17822331748473	0.184967898377552	0.705425449129243	0.922756484933722
Merged-chr2-27717422-2	chr2	27716922	27717922	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	6839.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.51165159746124	6.95687093964177	6.93652854877267	6.54003234144167	6.54330031485289	6.88637543061962	-0.245213222377402	0.394959524908723	0.772579826044138
Merged-chr19-41104618-4	chr19	41104104	41105104	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 12 of 20)	B4|SINE|B4	-27491.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	4.86585533735877	4.45959159001443	4.21540518137741	4.79996865604077	4.93128171117514	4.74564882706638	0.643048849110827	0.162026926464175	0.535322342557572
Merged-chr4-105163374-2	chr4	105162874	105163874	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6027.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.64363581412015	5.58249151560769	5.57635838534526	5.7706247676019	6.06896201915302	5.74957179350981	0.508372366949449	0.110040765617697	0.443363350300229
Merged-chr7-45095597-4	chr7	45095097	45096097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-3384.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	6.26469621228964	6.35308311974428	6.24291734601373	5.96758958548364	6.14196222563792	5.92218879202798	-0.451302501624371	0.115196016949155	0.453052426067273
Merged-chr2-27747224-2	chr2	27746724	27747724	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	36641.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.90629938010647	4.23030105657436	4.74192477996282	4.03602304347677	4.14385080201315	4.77264195317035	0.0519887953936325	0.92743119347878	0.983584626679457
Merged-chr19-41326717-2	chr19	41326217	41327217	+	686.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 6 of 16)	intron (NM_031376, intron 6 of 16)	58353.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.73799924744534	4.53125900611032	4.95803423814922	4.88179710424173	4.49169166266512	5.02184329746336	0.140405356979324	0.748520836036861	0.937057639195805
Merged-chr8-124912128-4	chr8	124911616	124912616	+	897.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14230.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	4.50174457060187	4.54164032172419	4.33701808981018	4.15347022625757	3.59981699229786	4.07805873699661	-1.4337667746319	0.00655378070822773	0.0745389536864698
Merged-chr17-5594910-2	chr17	5594410	5595410	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	102310.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.91488906137456	3.66189783234608	3.59662419279443	3.64445016099291	3.5579852746768	3.8739422009864	-0.153480785350074	0.78464492901497	0.947710697182936
Merged-chr16-91461886-4	chr16	91461387	91462387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3217.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	8.36755077338014	8.33693182506275	7.96144452867604	8.07480066606283	8.45898022038855	7.82524074198643	-0.117817911596891	0.658185433588039	0.904942849604168
Merged-chr2-129431520-3	chr2	129431012	129432012	+	785.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60373.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.67323983015973	3.7130806897878	3.71581459936919	3.34991934200024	3.5001939877935	3.57806930425414	-0.795556446418227	0.160291923499239	0.532965919658045
Merged-chr18-4312104-3	chr18	4311599	4312599	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40854.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	3.39820273721823	3.05338093050994	3.1545239153086	3.10255751564419	2.9675274367243	3.16847776894775	-0.587239884406833	0.378415169824852	0.760835313538391
Merged-chr17-35235860-4	chr17	35235339	35236339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-24.0	NM_010909	18038.0	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	7.1365110741333	6.75110788189974	7.10998652359549	7.39746011738511	7.18584132456428	7.41592701767482	0.489675776802781	0.0579756984398531	0.311100231644186
Merged-chr15-79689723-1	chr15	79689223	79690223	+	673.0	f1_balb.idr	Intergenic	Intergenic	-1173.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	4.66477669036467	4.65494868337929	4.42170257559546	4.86764851385125	4.78243804627823	4.62426048694626	0.405073009484366	0.329557151764671	0.721399184090983
Merged-chr8-85557332-4	chr8	85556828	85557828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	7.1304418733224	7.44236613794404	7.07377873280206	7.47124720140414	7.84976279608587	7.17165652725075	0.452715985046568	0.111949612214737	0.446917590229998
Merged-chr10-77548735-2	chr10	77548235	77549235	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008404, exon 6 of 16)	exon (NM_008404, exon 6 of 16)	18387.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	3.35997905277358	2.90155047229462	3.4329723864834	3.15496588361143	2.91973708128791	3.50300067567802	-0.153567906457365	0.832807980574562	0.960780401353874
Merged-chr17-34633474-4	chr17	34632979	34633979	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3793.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	6.72304574051522	6.28605675656229	6.94482610965889	6.87676778579603	6.93227538645638	6.94952807489921	0.387881770254806	0.180235740933557	0.561918975293171
Merged-chr3-7755714-4	chr3	7755223	7756223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-141963.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	3.42468149625862	3.36187155953159	3.42759480690003	3.41802218581769	3.1680319254862	3.27261983043336	-0.461021420900685	0.449383672694031	0.807761520627757
Merged-chr11-102189175-2	chr11	102188675	102189675	+	781.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-524.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	6.86513648993016	7.0587054083063	7.22762931572935	6.91150644843593	7.33944347309627	6.80560918836645	-0.00184537554119256	0.994785755950117	0.998961028701257
Merged-chr5-139464569-2	chr5	139464069	139465069	+	855.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4035.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	6.29673828443113	6.25092714249008	6.01469769038447	6.04158498006289	6.05292579807949	6.00524018053921	-0.284289530055667	0.324529169010246	0.717544999689449
Merged-chr5-121618971-4	chr5	121618480	121619480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178799)	promoter-TSS (NM_178799)	-42.0	NM_178799	338350.0	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	6.23397170994006	6.44274682379942	6.2104550791765	6.44158859548931	6.51391027978436	6.27071890194383	0.188642678678532	0.499801760207458	0.83473846095707
Merged-chr9-16226286-3	chr9	16225811	16226811	+	652.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	151920.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.56363660630764	3.61524611988285	3.62943683782826	3.5617846569367	3.44634595450315	3.42598548133178	-0.442140472381527	0.435087629856527	0.798754997464962
Merged-chr5-146769757-3	chr5	146769213	146770213	+	594.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	25243.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.05542087055114	5.10509423936288	5.38998627002889	5.72166271206833	5.8920287256574	5.75492679371826	1.18505859843993	0.000428191324320872	0.00929046772205765
Merged-chr7-80095088-2	chr7	80094508	80095508	+	954.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173011, exon 11 of 11)	3' UTR (NM_173011, exon 11 of 11)	-19751.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.22101570130693	3.2888881601197	3.56621874914719	3.48944488556653	3.29463452794335	3.48051455867407	0.236204901468735	0.699275400090977	0.920558737649758
Merged-chr1-144199392-2	chr1	144198892	144199892	+	638.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22020.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	3.91170205021149	3.91689467152744	3.66925529420783	3.82023459424268	3.70747076071768	3.79386228615814	-0.236510104226024	0.655481134290363	0.904286601743332
Merged-chr6-108829914-4	chr6	108829421	108830421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	1280.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	6.59019856280686	6.39864288511188	6.17303842570142	6.74585195696945	6.86555670662456	6.36375878908252	0.446096622328222	0.13470827494756	0.490581501305871
Merged-chr5-146231736-3	chr5	146231243	146232243	+	949.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359990, exon 1 of 13)	exon (NM_001359990, exon 1 of 13)	493.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	6.60863320167122	6.36976787369724	6.46913511675541	6.79346833670599	6.04304164816117	6.49282241487992	-0.0163490624918502	0.959364493696505	0.990174309444982
Merged-chr2-165983761-3	chr2	165983205	165984205	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8932.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.28796796697876	7.34402603924973	7.23549020927853	7.41765888362822	7.69194775338234	7.31648778933384	0.298156073924141	0.218019422882849	0.612156710919465
Merged-chr5-66105571-4	chr5	66105071	66106071	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7392.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.41406238040378	7.25997285805575	7.31545842126724	7.44400288026211	7.59100770497542	7.64319218165883	0.337268702222962	0.14040868421697	0.500760820920022
Merged-chr3-38128690-4	chr3	38128205	38129205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79414.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.40155390241102	5.5681050207115	5.43081044959795	5.54642478870941	5.49810238028793	5.58023192485082	0.127029200780071	0.696801640417234	0.919637580430752
Merged-chr16-77014911-3	chr16	77014422	77015422	+	907.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	853.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	6.56747084884853	6.53567957253047	6.32933495864293	7.05153442487807	7.17334687771339	6.77123663943582	0.826081515699944	0.00223210590121416	0.033579654281003
Merged-chr6-34869031-4	chr6	34868503	34869503	+	723.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	PB1D11|SINE|Alu	5857.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	7.96831163036805	8.13438995860638	8.02985323907483	7.89279726562913	8.10886202840791	7.79367686088137	-0.143819694036767	0.5204740759793	0.846479944374449
Merged-chr19-17276708-3	chr19	17276222	17277222	+	923.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62783.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.24346783939435	4.60232493629814	4.80119763790882	7.09875795549133	7.53174048206214	6.87770183305014	5.3153580949407	1.38756608084184e-32	1.4432074806836e-28
Merged-chr3-88153480-2	chr3	88152980	88153980	+	619.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	11108.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.34630181787641	3.30895016112258	3.17593107583237	3.13669439277902	3.16702134230494	3.30521672270612	-0.342705874702646	0.584663358238742	0.874629979366603
Merged-chr10-80034200-4	chr10	80033674	80034674	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5485.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	6.46423417513245	6.49772273201943	6.54970928210949	6.22884404826635	6.22409520739382	6.0314578464546	-0.543272865351719	0.0475420020884245	0.27620967111951
Merged-chr1-85309788-1	chr1	85309288	85310288	+	577.5	f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39222.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.8046734609751	3.04239328593681	2.9078541806461	2.60922773789877	2.39160780717696	3.2566332393904	-0.291221300991221	0.858101311322907	0.966810565896068
Merged-chr7-80688914-7	chr7	80688415	80689415	+	942.828552	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173863)	promoter-TSS (NM_173863)	-38.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	6.07094994246978	5.92472553392329	6.26110100763029	6.45630721162949	5.85873181922367	6.30172112379927	0.233085650611764	0.473840861637438	0.821131043651886
Merged-chr6-115650024-4	chr6	115649536	115650536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	25852.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	7.77501472119951	7.66299815671023	7.49264328113236	7.66396467153904	8.1008577059948	7.5801883382589	0.229603764158339	0.372731869442541	0.756537953227832
Merged-chr9-65202631-1	chr9	65202131	65203131	+	556.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12059.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	5.62469469087923	5.84839006544323	5.52708246664605	5.60767877754764	5.93328906222068	5.26304244224161	-0.0581621560228262	0.87350328187477	0.970409437516545
Merged-chr11-87853254-4	chr11	87852781	87853781	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039684)	promoter-TSS (NM_001039684)	56.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	4.77926670882902	4.82060518460333	5.15908683999264	5.19299368196608	4.96694550439886	4.79866288754176	0.177540423855389	0.657904510623769	0.904859102731141
Merged-chr2-104491570-1	chr2	104491070	104492070	+	570.0	f0_balb.idr	intron (NM_010434, intron 1 of 15)	intron (NM_010434, intron 1 of 15)	2919.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	3.35348161143176	3.38791920329687	3.15235353925863	3.33444444092391	3.200329091381	3.28466768681151	-0.145801349106746	0.814987639279899	0.956370078970016
Merged-chr4-106839058-4	chr4	106838569	106839569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34062.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	3.82898181352713	3.55491016542029	3.50405086124194	3.51810606224638	3.47669040730914	3.63015811378737	-0.366371032338671	0.523321876430022	0.848160629021996
Merged-chr19-10523797-2	chr19	10523297	10524297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 1 of 3)	intron (NM_025333, intron 1 of 3)	1412.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	3.37637767527812	3.34585932467527	3.64906166558973	3.62714594690806	3.14233483141591	3.45873111322507	-0.136707550471633	0.828992481652969	0.959932344512127
Merged-chr6-100210919-4	chr6	100210453	100211453	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76405.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	5.34118778833116	5.61287356368917	5.21886094917958	5.62061125312887	5.21321248500789	5.06723164910586	-0.161177925710869	0.672651959906306	0.910949422492829
Merged-chr11-100345315-2	chr11	100344815	100345815	+	841.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	10813.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	6.94216203127784	6.6861604535984	6.77950931734665	6.45095354503077	6.70272235518068	6.5069399098797	-0.382456722347303	0.1521142549466	0.520013451274295
Merged-chr6-145274771-1	chr6	145274271	145275271	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	24219.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	5.58315073442185	5.37924805749618	5.07444504642372	4.9717684292496	5.0438288623742	5.20888042237222	-0.611665135292303	0.102439117450282	0.426870697355923
Merged-chr4-109439289-3	chr4	109438778	109439778	+	793.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 13 of 17)	ORR1D2|LTR|ERVL-MaLR	23631.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	2.44629251588242	2.53850037986866	2.57207635900111	2.50825541077607	2.37235285487383	2.64543978785695	-0.063791795545263	0.936018984020909	1
Merged-chr14-17905766-3	chr14	17905282	17906282	+	999.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-75862.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.5973395309396	3.35727198044161	3.08527576952693	3.23393276152625	3.20880943277974	3.76340636870003	0.221286767780449	0.75041282539961	0.937550343416037
Merged-chr14-47649733-4	chr14	47649240	47650240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347528, intron 1 of 37)	CpG	429.0	NM_001347524	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	6.96127055554847	6.99505408756517	6.83422913759007	6.52990517912977	6.32589136480727	6.38413114888521	-0.825015597970041	0.00140952822632248	0.0236085219193259
Merged-chr15-101246434-4	chr15	101245930	101246930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-20416.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	7.92025902412539	7.88854604344736	7.49197831412182	7.81852379354792	7.95000375024133	7.38142253187837	-0.0569693463134637	0.832297086444545	0.960616839788396
Merged-chr17-23829195-4	chr17	23828692	23829692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026305)	promoter-TSS (NM_026305)	-83.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	6.52858581227415	6.4066344083383	6.5728522605578	6.56124112673161	6.37826182128136	6.36145052088419	-0.10192224661458	0.704201282169747	0.9223772679418
Merged-chr2-122150673-7	chr2	122150193	122151193	+	826.68573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	3006.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	5.35361638888799	5.2972866259453	5.31414102834783	5.8404068759249	5.8667503163225	5.47427807589355	0.809033708005156	0.0157864310061397	0.137675018463355
Merged-chr19-6277826-4	chr19	6277330	6278330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	934.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	8.45898235490847	8.3026752839381	8.08476008338955	8.11428443260236	8.17679116997166	8.00003169940613	-0.272796407313474	0.221560218928385	0.616327316682036
Merged-chr7-100863475-4	chr7	100862965	100863965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177073)	promoter-TSS (NM_177073)	-52.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	6.99529716609396	7.06641759157951	6.63130618911911	6.92954782007177	6.92969657098929	6.91244838625587	0.00180676679259108	0.994483271736034	0.998946345565713
Merged-chr16-22266001-4	chr16	22265494	22266494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	11.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	8.4897287994235	8.67520367622981	8.40916311613126	8.13357279800985	8.54852765854743	8.49790823216453	-0.173159700467759	0.453368034773157	0.809761744660326
Merged-chr8-22697653-2	chr8	22697153	22698153	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8930.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	4.81937771657437	4.81741570950406	5.19439103701512	4.95310565458768	4.34798491388048	5.00638626148267	-0.343942814395183	0.447272154893267	0.806316645191341
Merged-chr6-118419540-4	chr6	118419127	118420127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194339)	promoter-TSS (NM_194339)	-210.0	NM_194339	213895.0	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	6.84016021252931	7.1367956982477	7.15927540349565	7.03854693715356	7.01407003309065	7.01486542085096	-0.041696476601669	0.867284265585108	0.96931826298411
Merged-chr11-80384784-2	chr11	80384284	80385284	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	1505.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	4.4369761906094	4.53172558452711	4.61558287341986	4.70383768507834	4.41791488448012	4.33780605659692	-0.0665934566524527	0.879243603528358	0.972083703102674
Merged-chr4-58586154-4	chr4	58585653	58586653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32662.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.38843566353296	5.56615218103667	4.93768226342728	5.29716663113732	5.29190442047573	5.3584096823894	-0.0499500264519245	0.894642514916601	0.975576532925631
Merged-chr13-112443356-4	chr13	112442851	112443851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20719.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.1338451802717	4.81631365217936	4.75304524885624	4.77957759536315	4.77779673927144	4.85828689259087	-0.261406029379198	0.512844140752433	0.842142798618015
Merged-chr15-99847519-2	chr15	99847019	99848019	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 1 of 10)	intron (NM_001113545, intron 1 of 10)	-27370.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	2.70008290289675	2.71617407517379	2.79079107388331	2.79480950795014	2.52130854412782	2.67785217267392	-0.368280137456704	0.624890116782418	1
Merged-chr2-158123205-2	chr2	158122705	158123705	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	intron (NM_009373, intron 10 of 12)	23187.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	3.38209394474909	3.68136463423894	3.63607138859154	3.51973089009122	3.23479611077435	3.43915980431046	-0.643594611822069	0.286351313229739	0.683634696330879
Merged-chr4-154913743-2	chr4	154913243	154914243	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14334.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	2.34794795432363	2.32260319787127	2.52886365137406	2.62018798889335	2.68001953276972	2.72733364815096	1.74134634390406	0.0338863097634238	1
Merged-chr15-77803972-2	chr15	77803472	77804472	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	38203.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.5915832606342	3.46985095800191	3.6935064767329	3.58029818309831	3.22608164974415	4.16251395596799	0.419812128940813	0.522596220085101	0.847678004616966
Merged-chr10-94961481-4	chr10	94960970	94961970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16892.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.58116198154016	4.27383191255162	4.30434196198877	4.15652573410554	3.8591289459922	3.75829272536362	-1.2958271018669	0.0118325098464031	0.113050976947557
Merged-chr13-23747293-5	chr13	23746821	23747821	+	749.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175664)	TTS (NM_175664)	587.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	6.86640689574016	7.21230584903903	6.81190362751781	6.65244633594847	7.53378660567203	7.15949607399118	0.291268856258497	0.364016135100878	0.74943226864296
Merged-chr1-136139548-3	chr1	136139052	136140052	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	RMER10B|LTR|ERVL	8162.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	6.85595335536771	6.75304284246469	6.866990724389	7.17087544059545	7.56852149217854	7.16831200672812	0.759773757456521	0.00334209282117075	0.0456032895152469
Merged-chr17-21567001-5	chr17	21566492	21567492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	14.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	6.48761855948614	6.25396733970044	6.43601878710966	6.25975524959862	6.93415279974199	6.71395181207855	0.445505008016674	0.147352402547604	0.512227670074211
Merged-chr8-11463882-4	chr8	11463409	11464409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-14020.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.58909879595154	8.84954609936979	8.36802998419945	8.51782753702505	8.96797835387283	8.39298316699706	0.0495183400625089	0.849177646295084	0.964608463945227
Merged-chr5-45498377-3	chr5	45497866	45498866	+	835.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4992.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	3.89538623437807	4.03116976475087	4.11646071389207	3.83722977227197	3.30684868169219	4.09623134811343	-0.711630925027542	0.246292837903501	0.643378471612549
Merged-chr16-45090327-6	chr16	45089827	45090827	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3684.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	5.84430981812308	5.90293655571508	5.92014329202415	5.75129756622737	5.8553392437142	5.29235819997274	-0.387243609685771	0.252250974882738	0.649735854202467
Merged-chr6-50112957-4	chr6	50112470	50113470	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	2110.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.5202861446821	4.65717911493633	5.0021890537123	4.5413635728166	4.66045255761245	5.03359925952882	0.0481636848041272	0.913022584477148	0.980521208172103
Merged-chr19-32259267-4	chr19	32258764	32259764	+	910.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-48251.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.11503490870432	3.45934736497994	3.36610985825953	3.27043144671247	2.89238757496402	3.09144710367111	-0.975750831783072	0.154169996889299	0.523300036761231
Merged-chr11-6290935-2	chr11	6290435	6291435	+	818.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252282)	promoter-TSS (NM_001252282)	-662.0	NM_010956	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	5.08186645163353	5.35145604729095	5.32379651377424	5.76242668076032	5.70784780837854	5.2897547046813	0.690580406112276	0.0534856350625926	0.296537361559715
Merged-chr7-80184486-6	chr7	80183997	80184997	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2344.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.09963164727488	4.07744695155475	4.25877177731822	4.50379435298807	4.76844788854763	4.84393019017593	1.47274226262606	0.00104186901193909	0.018575495338639
Merged-chr11-86652358-2	chr11	86651858	86652858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18917.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	5.78243076044103	5.74344074069843	5.66066854040499	5.29905919144465	5.58245870529807	5.3721935658579	-0.561012482485275	0.0892825232518341	0.396934184373724
Merged-chr8-69792838-4	chr8	69792368	69793368	+	770.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133224, intron 1 of 25)	intron (NM_133224, intron 1 of 25)	1705.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	4.42921837951892	4.24824767957079	4.82849354879627	5.14610290053897	4.94237942573711	5.1298460045169	1.29517973042367	0.00263841948434317	0.0381738147197403
Merged-chr1-134415392-4	chr1	134414904	134415904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	26.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	8.6679777268358	8.73364482365053	8.59981704430769	8.57011431428474	8.68721375394904	8.39782127984254	-0.149080776682025	0.473523496112934	0.82090428702971
Merged-chr12-76594257-7	chr12	76593729	76594729	+	880.619019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-46304.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.33013695735235	3.08481160103304	3.35011866781805	3.13479696838404	3.05151565397182	3.14183448616014	-0.647542823940149	0.317067343065249	0.711004675302465
Merged-chr1-191963501-3	chr1	191962995	191963995	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13875.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	2.49084161572821	2.41938093177137	2.53577493393566	2.32087915798696	2.44941969527701	2.21297103742765	-0.920163590089358	0.29032141276071	1
Merged-chr19-11771872-2	chr19	11771374	11772374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	intron (NM_025606, intron 2 of 3)	1459.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	4.40076610077119	4.55301897722121	4.35107132139117	4.73320870241103	5.06319317948104	4.72589578541058	0.98707776232597	0.0209837935382843	0.166663193535759
Merged-chr4-24898866-2	chr4	24898334	24899334	+	596.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026742, intron 2 of 2)	intron (NM_026742, intron 2 of 2)	751.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	5.06627751226728	5.10545035598352	5.07129515332533	5.32952956550813	5.13949041722959	5.1361139666327	0.255315927887064	0.475065791914564	0.821727753368561
Merged-chr3-99140671-2	chr3	99140171	99141171	+	548.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027462)	promoter-TSS (NM_027462)	-419.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	6.13065839942005	6.2079798189189	5.91856135754309	6.31069683384714	6.13334628618684	5.95547485613253	0.0793482313663027	0.791206580491851	0.949694766870106
Merged-chr9-42124018-2	chr9	42123518	42124518	+	761.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011436, exon 1 of 48)	exon (NM_011436, exon 1 of 48)	279.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.87359165410578	2.76426748412672	3.23272876428589	3.05169066066991	2.91515087174908	2.96581242785094	0.0601143448549592	0.932975413679554	0.985356091252617
Merged-chr1-131089916-4	chr1	131089408	131090408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7935.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.03142804359629	6.76618481910829	6.53117221793163	6.69950006876972	6.71129966470924	6.47855972199428	-0.253380506939852	0.366195083115088	0.751283584197618
Merged-chr5-142443673-4	chr5	142443155	142444155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-20276.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	5.03041215046583	5.3337259619611	5.22132059832084	4.63239015330865	4.77023122857836	5.0597528356416	-0.816499772847014	0.038168254308385	0.241734214073078
Merged-chr2-119290109-2	chr2	119289586	119290586	+	840.541626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	1344.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	5.38235592742538	5.52753142999402	5.54488003894141	5.37763654000584	5.39978070416417	4.85667766840441	-0.458770046016616	0.222762035457599	0.61771534824776
Merged-chr9-50540360-3	chr9	50539846	50540846	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359610, intron 6 of 10)	intron (NM_001359610, intron 6 of 10)	-11705.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	5.16764274840974	5.37388634233164	5.27968439887926	5.16933602339842	4.99891918150568	5.34286038460932	-0.2271645431193	0.530118123135058	0.851070276054813
Merged-chr13-98856261-2	chr13	98855761	98856761	+	998.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 15 of 23)	Lx8|LINE|L1	34781.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	2.39687408286951	2.36327451822373	2.58063014606505	2.40918251055137	2.43767551102624	2.53048909117295	0.0776156098292084	0.922926404692447	1
Merged-chr7-30917416-4	chr7	30916914	30917914	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-2492.0	NM_010758	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	4.31736996386862	3.98838049478475	4.17963007585037	4.60437373010859	4.39227582868712	4.34219386506594	0.754081731684998	0.107342579372508	0.437359775948862
Merged-chr5-3382483-3	chr5	3381963	3382963	+	866.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	38570.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.90857302040367	5.07204568031773	4.50840081505747	4.7791586842448	4.81840614075851	4.75109974525049	-0.179157611023447	0.669739797176774	0.909740802307883
Merged-chr19-28659367-3	chr19	28658886	28659886	+	880.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-18838.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	5.38976703190575	5.39004159804964	5.24548785371523	4.49301706747041	4.39723989116297	4.42131239513048	-2.07046065809237	2.23383636754131e-07	1.43976031348085e-05
Merged-chr11-118460928-2	chr11	118460428	118461428	+	809.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5933.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	4.66386486922482	4.32973993433332	4.8129116130988	4.29020411091081	4.06027140302453	4.70200508838084	-0.612929220229816	0.214078802811053	0.607286093929455
Merged-chr11-102411923-4	chr11	102411442	102412442	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20B|DNA|hAT-Charlie	-4425.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	3.7300055116256	3.52347563467569	3.60327544738623	3.57312910580097	3.40020044288484	3.20595484893613	-0.789337728302941	0.19547551022537	0.583125739606088
Merged-chr13-92322699-1	chr13	92322199	92323199	+	657.0	f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	MTD|LTR|ERVL-MaLR	-32084.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	2.43763156193923	2.60380737933531	2.51202119128257	2.66641052715108	2.57790555699936	2.77389437625095	0.858489918710552	0.270346100109039	1
Merged-chr2-22750348-2	chr2	22749848	22750848	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23979.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.38995545832596	5.21119390323172	5.37189119925263	5.18169616394875	5.13828726992438	5.72409174230489	0.0736335311214374	0.845697842818599	0.963850894494439
Merged-chr2-75681514-2	chr2	75681014	75682014	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	22224.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	3.27281196896769	2.95797756908723	3.15118249972358	3.22255312088172	2.93445461204674	3.27982642426435	0.0653475962696572	0.923288178367741	0.982699256056545
Merged-chr11-86653702-3	chr11	86653241	86654241	+	819.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	17534.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	4.91800215104437	5.27370746951827	5.25162531490757	5.2973791341402	5.50981520633326	5.11396870282977	0.350755303216252	0.350589739693706	0.738596934645462
Merged-chr17-10344881-4	chr17	10344483	10345483	+	976.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20381.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	6.2280246801616	6.18034468160923	6.06615436037792	5.8884821196026	5.76212685115332	6.32742669993848	-0.279015800942129	0.37965959185635	0.76201161008233
Merged-chr8-109750401-2	chr8	109749901	109750901	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12662.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	4.09246033108938	4.07590836361375	4.11977023089938	3.97246427447146	3.94067828820281	4.27423841720604	-0.100309470560052	0.837872775971497	0.962274060303327
Merged-chr9-21525358-4	chr9	21524857	21525857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	-820.0	NM_001198794	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	7.23925364857356	7.295000753463	7.49197926089285	7.50388308528113	7.71886712634729	7.39332767074471	0.312113970895062	0.19560766787042	0.583394488267032
Merged-chr8-18759955-5	chr8	18759428	18760428	+	736.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173189, intron 12 of 13)	MER126|DNA|DNA	-18366.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	2.34902186895351	2.63613860986072	2.62286506871205	2.34754082651542	2.28502366128617	2.38440730118816	-1.34875546680445	0.113365397252278	1
Merged-chr2-180273011-3	chr2	180272492	180273492	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	473.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	5.20187905321137	4.48770098498917	4.6808093341142	5.22676122125643	4.39934217551865	4.82891453926376	0.0707878415778336	0.887359939342634	0.973836995667151
Merged-chr4-132532814-4	chr4	132532371	132533371	+	799.7559809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007512, intron 3 of 3)	intron (NM_007512, intron 3 of 3)	2543.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.74181708124866	5.85569062753714	6.07281255510265	5.96328899506237	6.43336760687375	5.90174278079843	0.427538909105483	0.193762904435096	0.581033530782477
Merged-chr7-89981162-4	chr7	89980673	89981673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021876)	promoter-TSS (NM_021876)	-197.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	8.05642861019296	8.26802191072988	7.85083606530714	8.23395816275613	8.35524610761067	8.15010459739496	0.247418300905562	0.280857968278858	0.678974689112037
Merged-chr1-64191727-4	chr1	64191235	64192235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70346.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.43770426752485	6.50996951665758	6.40657196777266	6.03873370300288	6.48038328679579	6.51947301315045	-0.147051677367591	0.614196838565448	0.887421941740887
Merged-chr2-11739755-4	chr2	11739244	11740244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34032.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	6.00195902986328	6.00562512431178	6.19046560029578	6.00098415022221	6.18792764395183	6.32777376851796	0.191679371421338	0.513073943271805	0.842314274164634
Merged-chr18-56720094-3	chr18	56719587	56720587	+	852.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	12274.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.63259116873549	3.75378790728568	3.75481906595786	4.012394527018	4.05012656130129	3.87765630630861	0.868454694294997	0.0934599067302513	0.407193389963535
Merged-chr12-85608274-4	chr12	85607802	85608802	+	757.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030887, exon 2 of 4)	exon (NM_030887, exon 2 of 4)	8284.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.26579395289813	2.97242748306525	3.31457253249486	3.23172117029565	3.08692840151885	3.33107738057193	0.110778050940313	0.865852905818434	0.968641478520565
Merged-chr11-20831070-6	chr11	20830555	20831555	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173752)	promoter-TSS (NM_173752)	53.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.23707469804231	4.78628304858872	5.20191981146686	5.07602608892048	4.40072785284717	4.81915313843289	-0.646843713741282	0.148271072309074	0.513762236213799
Merged-chr2-45090783-2	chr2	45090283	45091283	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	ID_B1|SINE|B4	19494.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.69872246196517	6.73089170326808	6.6853596024098	6.70175184756207	6.81365860833624	7.11656947708646	0.273003438695531	0.300534415217817	0.697311691851564
Merged-chr16-91847709-4	chr16	91847210	91848210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	83920.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	8.15139416723198	8.10099965326453	7.7445779030537	8.17157616389048	8.47982469361124	7.92202257959725	0.284688962266199	0.269807125642027	0.666905044122659
Merged-chr8-117280588-4	chr8	117280096	117281096	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	23577.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.29071928020909	5.05296096887579	5.30503972598587	5.25719340686864	5.1659461327086	5.53812377439102	0.205357853376096	0.572283523657609	0.869807909725036
Merged-chr19-3574809-2	chr19	3574309	3575309	+	991.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	intron (NM_001360430, intron 1 of 22)	940.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	6.16203080489332	6.16521338885719	6.08309983442725	6.23221180746765	6.60366535379212	6.02710455373622	0.311956338834484	0.311340837094464	0.706465219571547
Merged-chr1-172521042-4	chr1	172520571	172521571	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-59.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.08509031784248	3.7512541392936	3.86432511146525	4.35917607438597	4.22065711824512	3.7087770733082	0.644616137518797	0.24707652639682	0.644131453721422
Merged-chr6-72097507-4	chr6	72097022	72098022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-86.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	7.51555896030855	7.47855757444719	7.42410927268829	7.6604348773596	7.85720762690054	7.1175298609544	0.174394456797278	0.525173032552204	0.848874487604023
Merged-chr4-150011930-4	chr4	150011425	150012425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2902.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	6.26039236964945	6.05935119068241	6.6095354169498	6.41573355085223	6.37689151570781	6.68356037801292	0.284697622568257	0.348350040047379	0.736252130667844
Merged-chr12-76256359-2	chr12	76255859	76256859	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	intron (NM_138745, intron 1 of 27)	1127.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	2.95232381361579	2.90064567983243	2.76930997424461	2.99886522661545	2.64015962663669	3.1430104090326	0.29678215587616	0.693468942430642	0.918960880648635
Merged-chr13-18808435-5	chr13	18808024	18809024	+	966.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	91232.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	6.17956478164694	6.03270105453997	5.84726306725403	6.06083748618791	6.28429406419172	6.32910106319416	0.326414921600171	0.273392138677625	0.670659339634344
Merged-chr6-148577866-4	chr6	148577367	148578367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	6.39692615024455	6.1551076291786	6.2786034054371	6.7440704512725	7.00944192811939	6.80908570460817	0.932236275036797	0.000559928100595207	0.0114811477068324
Merged-chr7-145090249-4	chr7	145089752	145090752	+	820.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117867.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.04085663028559	4.05552595964682	4.02181305378167	4.37965847396981	4.19174223583684	4.18847406803426	0.608579033606027	0.197213397036176	0.585184093166896
Merged-chr5-99289324-4	chr5	99288832	99289832	+	922.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-36405.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.05638939298143	4.98880481729553	5.13461338964942	4.66974398346822	4.42884395540997	4.86032510794658	-0.924777253010086	0.0223854255155003	0.173866851619007
Merged-chr2-72197234-3	chr2	72196733	72197733	+	804.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 8 of 26)	intron (NM_001355478, intron 8 of 26)	-88404.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.90342316589786	2.9397925295763	2.94997422535072	3.58847407668911	3.52244408772287	3.33768815519461	2.54466186885091	0.000256513739653094	0.00614038988753011
Merged-chr3-61309389-4	chr3	61308886	61309886	+	896.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55121.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.52212095335945	3.34089339429646	3.74365445903856	3.54867226489635	3.938171876814	4.0450163032433	1.07511611465795	0.0685574334112543	0.342490809274955
Merged-chr10-121263674-3	chr10	121263179	121264179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029057)	TTS (NM_029057)	47717.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.64129485990787	6.08311784371621	5.68286210765223	4.66242649544311	4.6212592582251	4.61463678227381	-2.47743057383177	2.40065382386004e-10	2.93323940346177e-08
Merged-chr13-97548729-4	chr13	97548249	97549249	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11251.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.89198781460966	5.94629169501778	6.15346616830102	5.8505251200068	5.8943554048195	5.95420366844429	-0.167267688594311	0.575064597711691	0.87094931637326
Merged-chr1-89902382-4	chr1	89901893	89902893	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28783.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	3.94615397386599	4.24445265818187	4.33335902220199	3.81655606975394	3.89719082708169	4.23307442555267	-0.562609591902357	0.276777035298192	0.67408352270136
Merged-chr5-113797003-2	chr5	113796503	113797503	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146162, intron 1 of 1)	intron (NM_146162, intron 1 of 1)	3349.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	2.55233338926394	2.47855655065781	2.67280498937566	2.59194637366488	2.30506437655479	2.74609372790033	-0.0658524887105224	0.936326588754489	1
Merged-chr2-164822941-4	chr2	164822438	164823438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178375)	TTS (NM_178375)	252.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	5.99599789740529	5.87892604371511	6.06627082256921	5.8126586629478	6.06459523523684	5.7957078823589	-0.123079799871745	0.686807988343166	0.91687527626078
Merged-chr11-98889372-3	chr11	98888862	98889862	+	908.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197940, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-18527.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	3.10354501120923	3.35513711299494	3.78564202768804	3.44586156642139	3.57629621214242	3.66314925307122	0.445346773767896	0.493073034743214	0.831208279358962
Merged-chr4-109419189-4	chr4	109418685	109419685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	3538.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	3.85395498768997	3.65180313003967	3.56555157917713	3.60015196515972	3.48264507815553	3.40596303776276	-0.705232443198446	0.220524641151614	0.615020847852445
Merged-chr14-120157607-3	chr14	120157091	120158091	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115156.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	2.81206115597046	2.96126699432816	2.90982136336734	2.72994574597304	2.71709047823202	2.92291345131987	-0.548700122604517	0.443378169194054	0.803776494488375
Merged-chr5-146844535-3	chr5	146844043	146845043	+	761.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	-528.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	4.28359834819118	4.63848571635916	4.34637633631196	4.6067101695343	4.85619349227872	4.59241688260491	0.628196884431962	0.156608061246886	0.527444489607016
Merged-chr18-77708579-4	chr18	77708083	77709083	+	846.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	5427.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	4.56330409748871	4.4334783883831	4.68480511471093	4.11930024202737	4.67172141652568	4.85638428341368	0.0546107327389071	0.909117641622863	0.979384717565381
Merged-chr18-80294088-4	chr18	80293559	80294559	+	762.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190373)	TTS (NM_001190373)	37753.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.06197715471803	2.95243572441554	3.07139925372377	2.83090627544638	2.866430271031	3.02771529141706	-0.578940765739315	0.397741395605715	0.774593722474986
Merged-chr12-82259331-2	chr12	82258831	82259831	+	860.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	RSINE1|SINE|B4	-52018.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.34607381183628	4.38000655605653	4.06860335668185	3.98536818684368	3.91533891797123	4.60391563476278	-0.213995054728322	0.687739217975583	0.917193226920892
Merged-chr16-22027391-4	chr16	22026903	22027903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 7 of 16)	intron (NR_027488, intron 7 of 16)	17919.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	6.26870706078203	6.30328165885614	6.33119724857897	6.11947474199344	6.21168140847817	6.35303722420321	-0.122345178721849	0.65786024630452	0.904859102731141
Merged-chr8-35408041-3	chr8	35407517	35408517	+	768.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32276.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	2.7968170262683	2.53072276111042	2.73355606001001	2.6650291108951	2.68893398230613	2.80654669638618	0.150743460748567	0.841120573418562	1
Merged-chr5-24684825-5	chr5	24684325	24685325	+	937.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-990.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	7.22797872675486	7.57571004493985	7.4341536415053	7.51311681976849	7.82199787983414	7.47019842148873	0.290939992434436	0.24687381676212	0.643986348521616
Merged-chr13-81371278-4	chr13	81370762	81371762	+	921.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	Lx6|LINE|L1	261882.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.37160651414723	3.34854893744296	3.78963158869063	3.49716358557321	3.67873954196531	3.66314007613122	0.380074944288607	0.523243138904277	0.848099094240826
Merged-chr8-71371679-4	chr8	71371182	71372182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029865, exon 1 of 4)	exon (NM_029865, exon 1 of 4)	384.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	6.99444902978354	7.13953509308401	6.93216232245246	7.01232562704723	7.07664683219402	6.87378637830894	-0.0507640282517286	0.836596100983082	0.962001762335242
Merged-chr12-85532742-4	chr12	85532261	85533261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58871.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.73501867765348	8.52271419654999	8.10696191775948	8.28270453046138	8.739486247395	8.01809367034782	-0.132702993324474	0.644309356365462	0.900160672024687
Merged-chr16-43209732-4	chr16	43209225	43210225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	L1MD2|LINE|L1	-37559.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	4.95675021021656	5.01091089293281	4.94696957050144	4.65137114187128	4.8801920850247	5.1125894165495	-0.188669049371409	0.631433548745846	0.895122791781359
Merged-chr11-116784405-4	chr11	116783897	116784897	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8890.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	5.98457231577179	5.86300225188723	5.93214861272711	4.34148665074273	4.29053393892032	4.50976826997268	-3.46522280960496	4.70872832266276e-17	1.93962310035704e-14
Merged-chr12-98246998-2	chr12	98246498	98247498	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	12461.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	3.65103279113051	3.50939819248123	3.73437849837648	3.48384916300476	3.15127400153629	3.38119345985173	-1.09635739745195	0.0723143468603667	0.353166318279542
Merged-chr5-34528869-2	chr5	34528369	34529369	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	3085.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	4.90198402315603	4.97012675276221	5.27697092481538	5.20248714219109	5.08019935349303	5.53351271322431	0.465613515126444	0.227447613686051	0.622598315425407
Merged-chr9-99122933-4	chr9	99122423	99123423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	17288.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.57445896517731	4.24235057376108	4.13723548658891	4.60745950468355	4.61305574711809	4.15670624819933	0.369299389834117	0.450157334524781	0.808173357988092
Merged-chr1-74387775-2	chr1	74387275	74388275	+	804.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3834.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	5.99296103190635	6.0055750920821	6.59298589363726	6.2223797422942	6.22508539923435	6.66666299968029	0.271222760916326	0.418140556961734	0.788473936634102
Merged-chr7-27592072-3	chr7	27591588	27592588	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110208, intron 1 of 13)	CpG	536.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	6.96909536014584	7.05856537730969	7.21649260245608	7.57151045820597	7.56420924669199	7.38688301835042	0.64724813091437	0.00610558903104763	0.0706682225755197
Merged-chr11-23008380-4	chr11	23007860	23008860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5027.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	5.08199916204108	5.57972479210265	5.78634599483011	5.77012757060918	5.59596454842054	5.93871657106548	0.484462568489027	0.191425870055369	0.578049856489462
Merged-chr6-134073135-4	chr6	134072621	134073621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	37421.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	7.73540998248159	7.90141816494855	7.49626166421387	7.37368248209366	7.61590964387076	7.30030892676931	-0.415622381326348	0.0951751709326817	0.411148363215922
Merged-chr13-39836372-2	chr13	39835872	39836872	+	896.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	451639.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	3.19352390496722	3.7098877645481	3.44940536750998	3.37282543271029	3.46303591661478	3.465412761222	-0.141914181777071	0.82028035792694	0.957560934711718
Merged-chr5-146816330-2	chr5	146815830	146816830	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16560.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	3.11709205630944	2.54501747749699	2.85685226421201	3.10045935966744	2.83250367791083	3.11190885440614	0.720823230306633	0.368432054037866	0.753380524534667
Merged-chr9-55149887-4	chr9	55149393	55150393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346658)	promoter-TSS (NM_001346658)	-190.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	7.32253193146311	7.12967436225055	6.97873431587395	7.07161223822539	6.45897066759659	6.72147823611329	-0.584467821379847	0.0434364520484193	0.261876315798375
Merged-chr12-102721399-4	chr12	102720906	102721906	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16537.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	6.13716064775644	6.46873744537638	6.56142081420585	6.22471826078776	6.05794313708362	6.28464683215893	-0.351471756238415	0.234252244735613	0.630430842226563
Merged-chr19-41349138-2	chr19	41348649	41349649	+	795.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	35921.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.56786970542765	4.34220505181906	5.05257840407495	5.0724927293353	4.90264034975305	5.29607513699324	0.928570388652855	0.0372182317906361	0.238073080476264
Merged-chr13-43778323-4	chr13	43777840	43778840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6772.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.68739883808024	7.33888044311346	7.19196750252925	7.16520910744582	7.34764660087945	7.0249435775563	-0.350861015194519	0.186412238349567	0.570970681314541
Merged-chr12-105684544-4	chr12	105684047	105685047	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	694.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	7.96137952979954	8.41396184157222	7.76363011883405	7.90036095910901	8.02321497231761	7.53796163342009	-0.340550721852684	0.22027671227504	0.614681541170627
Merged-chr5-123151279-4	chr5	123150756	123151756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 6 of 16)	MIR|SINE|MIR	9063.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	5.64219417326771	5.26058339989744	5.7196575051406	5.21185988481764	5.1498427159388	5.68327076391704	-0.370589002613638	0.329086369921538	0.72115269198792
Merged-chr15-53399827-4	chr15	53399339	53400339	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-53656.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.50370081121019	7.85642917030507	7.59573002288904	7.52961425244545	7.96687290370056	7.71687463658599	0.132235696144827	0.600305638247504	0.881562830647152
Merged-chr2-31769641-8	chr2	31769180	31770180	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	9507.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	8.05363748148781	8.16464157056295	7.81568781939649	7.69711117017698	8.00040540999635	7.73216320053547	-0.287746079567305	0.224564390220996	0.619438735049331
Merged-chr16-91457557-2	chr16	91457057	91458057	+	714.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7547.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.57250690304853	3.59976689706522	3.88181761358727	3.92749955578129	3.74953464778533	4.13088958172042	0.816040159126521	0.136211070995408	0.493146752362964
Merged-chr13-56592108-3	chr13	56591613	56592613	+	690.133301	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-17473.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.10579196414502	3.90771970401242	4.22642833348175	4.08781419182989	3.67081185635203	4.6022918126439	0.245667191111047	0.668815804168285	0.909385924601941
Merged-chr12-83949141-3	chr12	83948638	83949638	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-1470.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	3.71714183996655	3.8736287861645	4.12320530349207	3.84596023761891	3.64973643925971	4.14716150236024	-0.0647228602405979	0.906590527743468	0.97878370342479
Merged-chr4-46304941-4	chr4	46304436	46305436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-39258.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	5.46418325879065	5.32305939074737	5.49834032266467	4.94385623923588	4.55086843156194	4.89055372032026	-1.34049369031289	0.000473735801635956	0.0100737563461601
Merged-chr3-105840030-4	chr3	105839533	105840533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24466.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	5.58471661278008	5.34738390110964	5.16537744148977	5.05151320764801	5.34282912857602	5.35931918019628	-0.255909273359733	0.485252665520253	0.827394620754206
Merged-chr3-41366991-1	chr3	41366491	41367491	+	993.1666869999999	f0_balb.idr	Intergenic	Intergenic	126208.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	2.86868315711081	2.61699368103251	2.89496115206298	2.53125934544138	2.3110222792035	3.23813552864078	-0.0052434603781906	0.997519504744989	0.999501498631083
Merged-chr4-102657419-4	chr4	102656944	102657944	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67601.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.44497968218625	6.43594950719765	6.6994874922885	6.34717216901962	6.35563604583654	6.34873541234319	-0.28165432361084	0.298978484525576	0.695809701710812
Merged-chr16-93032154-4	chr16	93031637	93032637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206063.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.08880989311831	8.03257735322977	7.7219164524539	7.57825677697871	7.94214646933614	7.6191854655175	-0.332644656763696	0.17751364764496	0.558517567618611
Merged-chr4-128824354-3	chr4	128823881	128824881	+	619.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18269.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	2.68405142895684	2.71816732181227	3.09751006137111	2.79296663834579	2.88670019510987	3.00203071810166	0.268538109906204	0.715595127041187	0.926402055104375
Merged-chr1-170175744-2	chr1	170175244	170176244	+	729.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-780.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	7.37658884630659	7.72918768545075	7.16264846353561	7.32417643057503	7.73873442048082	7.1946423263232	-0.00266281501493564	0.992605449531805	0.998523796268552
Merged-chr9-53390836-3	chr9	53390401	53391401	+	854.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 3 of 7)	intron (NM_212445, intron 3 of 7)	6878.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	4.43917272795728	4.24006994062231	4.09533181489632	4.36611526195474	4.15518380658532	4.2141352236171	-0.0725925051779492	0.877729598563097	0.971717948241951
Merged-chr11-87428051-5	chr11	87427538	87428538	+	880.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	PB1D7|SINE|Alu	447.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.28656837959024	4.30699263485901	4.46618746819324	4.31003712540714	4.37171427033526	4.64865119747884	0.241005038262986	0.590987486001154	0.877301111216348
Merged-chr18-67250038-4	chr18	67249539	67250539	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4209.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	5.45933407808742	5.39902154038018	5.37082626632408	5.72482745133083	6.39734681622744	5.86165992878099	1.14263263621392	0.00123359737933049	0.021229611321475
Merged-chr7-33900219-4	chr7	33899716	33900716	+	904.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44769.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	4.57986707654966	4.41863591154587	4.33832512084546	4.43091756800073	4.22482838045782	4.40613677003277	-0.270002708412436	0.544873837106838	0.857896259450602
Merged-chr3-36863046-4	chr3	36862521	36863521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-85.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	7.69303089460857	7.76227431518143	7.51332349823697	7.81449046811109	7.91231459299661	7.58026011824102	0.169684859372739	0.467935049976247	0.818205691164444
Merged-chr9-90216560-4	chr9	90216072	90217072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53594.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	6.32421617099981	6.11090064457267	6.37552043282237	6.09742176324867	6.21161430956564	6.57139206421666	0.0487258420317224	0.871110833661209	0.970222087171093
Merged-chr17-49019080-6	chr17	49018580	49019580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	86498.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	5.36322966105264	5.18628227924634	5.44134586994255	5.11776328343047	5.18197539573066	5.23322908038311	-0.306334295399366	0.383238951713936	0.764695011971252
Merged-chr6-34176220-2	chr6	34175720	34176720	+	737.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_021435, intron 1 of 9)	intron (NM_021435, intron 1 of 9)	834.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	5.95186076506822	5.92576113438716	5.8898787704945	5.73876193732863	5.34409898445467	5.33160721128652	-0.79965309364552	0.0156368879307786	0.13665730185319
Merged-chr1-86527403-4	chr1	86526892	86527892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008972, intron 1 of 4)	CpG-365	835.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	8.41276359752831	8.69867027678394	8.52317705774041	8.34261564854364	8.53271062681081	8.59911363906006	-0.078614533584916	0.716287119774158	0.926569584146506
Merged-chr5-99365375-4	chr5	99364819	99365819	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-112392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.2189701948885	7.46762097037229	6.98129803058432	6.799129931172	6.80010966586228	6.45728629498577	-0.8263349673077	0.00292392823211002	0.0413484398941894
Merged-chr7-27486923-4	chr7	27486428	27487428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-25.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	7.79494624386535	7.34373920055822	7.49332978527038	7.63000924854529	7.50797714140091	7.42482247093237	-0.0511841144223365	0.836979447126728	0.962035641067236
Merged-chr10-127264388-2	chr10	127263888	127264888	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1025.0	NM_001039000	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	3.20321583767587	2.84361471550237	3.07558268438762	3.61077768019782	3.48547465851165	3.44775324663831	1.96714695419136	0.00417746594323351	0.0536831793366137
Merged-chr17-55892039-4	chr17	55891520	55892520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-73.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	6.79997850644192	6.82034994383319	6.63043386557591	6.49998405438699	6.60605913974506	6.5519554351658	-0.322033774616545	0.210096098602252	0.602069023711811
Merged-chr11-4195807-4	chr11	4195310	4196310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8977.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	8.14619659264569	8.05430483431024	7.18378327144337	7.32531496600193	7.65137536935573	6.9829904414512	-0.741737558732449	0.027082665988291	0.195979372460218
Merged-chr6-141070058-4	chr6	141069538	141070538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179231.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	4.06782226645571	3.67093947343095	3.74678619956797	3.80870313015333	3.5424343640989	4.19199033832185	0.0776730749446547	0.894566724527186	0.975576532925631
Merged-chr2-164770456-2	chr2	164769956	164770956	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026785, intron 2 of 5)	intron (NM_026785, intron 2 of 5)	527.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	3.4942369320088	3.40851057154041	3.48257784492615	3.6797395862292	3.83923275518135	3.4389619770621	0.751049423495314	0.196780674804184	0.584746042932789
Merged-chr18-80260560-4	chr18	80260082	80261082	+	863.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	4276.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.98671934139605	4.143551778838	3.77437999419674	3.69100840113904	3.91593914707384	4.18393879478047	-0.131178434985031	0.808740511415548	0.954721853010197
Merged-chr1-55804136-4	chr1	55803616	55804616	+	740.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127125.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.3338259539825	3.13877310822802	3.18872301406163	3.35161821373156	3.15404321641357	3.37469007764605	0.275505682784986	0.661436759730773	0.90639160796631
Merged-chr12-55494865-2	chr12	55494365	55495365	+	969.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2218.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.5520431287028	4.63270549252292	5.07429394847535	4.77506769128448	4.58086099859083	4.90940899580148	-0.0161287146675696	0.970290015324618	0.993405767524074
Merged-chr15-98927930-2	chr15	98927430	98928430	+	846.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	6460.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	4.48184781769772	3.94471745940249	4.13937779487103	4.68268439333697	4.61114894076678	4.05243588376201	0.699465188662543	0.184698173061075	0.568503887251358
Merged-chr7-55911052-2	chr7	55910554	55911554	+	629.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	L1MEf|LINE|L1	51439.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.73242214389315	7.590292473672	7.77881790201674	7.76181090692575	8.15468711483951	7.90807623691063	0.368015281248309	0.116504821507581	0.455679603553968
Merged-chr5-110815645-4	chr5	110815127	110816127	+	945.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5546.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	3.31146075505822	3.39243453098097	3.88597690372576	3.19232469988326	3.00821848465272	3.53652369014937	-1.1108183402076	0.106020244347701	0.434594013486444
Merged-chr6-114364866-4	chr6	114364351	114365351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-33085.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	4.58425743929936	4.55478284195148	4.49045821884713	4.30327469519464	4.3938957971043	4.29175283381819	-0.541827487502494	0.211640756186375	0.603993331255815
Merged-chr12-102366712-2	chr12	102366212	102367212	+	999.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73101.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.80208290438913	7.11541234111067	7.02512130355247	6.7841852927837	6.86983073780017	6.3860532163803	-0.429350178656448	0.1263931839736	0.475300963888672
Merged-chr18-36720811-2	chr18	36720267	36721267	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	6048.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	4.72615342373403	4.60927885166356	5.05650810167955	4.26533742394512	4.10879057126642	4.9323910075045	-0.780343902209173	0.122745220128127	0.468761899964255
Merged-chr9-13752711-2	chr9	13752211	13753211	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	intron (NR_024025, intron 1 of 15)	3530.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	4.97277385815203	5.32145112235024	5.44028934660559	5.35513320922148	5.31049547394163	5.41690117966954	0.21216647307123	0.558047786296664	0.864474137025359
Merged-chr11-100626786-4	chr11	100626292	100627292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3837.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	7.204824208159	6.86156957170179	7.20160679928995	7.4485512123608	7.60482697553299	7.39469597870362	0.587762351796611	0.0181272968610559	0.151596561377232
Merged-chr7-99962066-3	chr7	99961569	99962569	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	18389.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	6.59580615182723	6.50997240759693	6.61109147615313	6.41292161732854	6.42401632241468	6.347790922654	-0.2791119508682	0.286188063295477	0.683472010443741
Merged-chr17-33781293-4	chr17	33780799	33781799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020581, exon 1 of 7)	exon (NM_020581, exon 1 of 7)	276.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	6.72443583059346	6.68028775286633	6.73216355276339	5.83774024816697	5.65989488966311	6.38432474501967	-1.20992490987806	0.000156425762166038	0.00411114176194305
Merged-chr15-7129972-3	chr15	7129488	7130488	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358593, intron 1 of 19)	CpG	416.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	3.62740676371362	3.53869924946972	3.56874971842579	3.72703273651424	3.71610167031786	3.84449713152566	0.620276050297568	0.253002367392044	0.65038992171148
Merged-chr1-131379186-4	chr1	131378714	131379714	+	921.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	(A)n|Simple_repeat|Simple_repeat	-99651.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	5.5092088217542	5.07750175166739	5.64840717514557	5.32047485679201	5.18195040385264	5.38394844464741	-0.260860397708061	0.483621584494458	0.826375570942476
Merged-chr18-77940456-2	chr18	77939956	77940956	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 1 of 43)	intron (NM_001195633, intron 1 of 43)	1989.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	2.86496153318194	2.59921391350459	2.53781741802245	2.94809302124543	2.85267180652015	2.93778988702842	1.19482003177866	0.125762856923594	0.474428788996618
Merged-chr6-97463947-4	chr6	97463432	97464432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-4646.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.43140080781318	8.62716256816303	8.39495979312617	8.30040001737958	8.79205781145758	8.14863533963823	-0.0514954358775461	0.840718405176711	0.962819298477451
Merged-chr16-32161816-2	chr16	32161316	32162316	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	B1_Mus2|SINE|Alu	3778.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	4.71425965911206	4.67891472792257	5.17800496581756	5.15139045924753	4.90815015149687	5.27089477270629	0.53472190691087	0.192326908843976	0.579367163874643
Merged-chr2-70978486-4	chr2	70977992	70978992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	39882.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.84025628224561	8.14040829599733	7.30806902449398	7.66904652080974	8.12825434041348	7.7243699504909	0.0648210312078165	0.827992200569551	0.959601858390316
Merged-chr9-104660021-3	chr9	104659540	104660540	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	90557.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.5792332481932	4.80343664687648	4.54215515692009	3.7174032939085	3.51407164428416	3.73966423842283	-3.1622189130064	1.40431622136247e-08	1.22613162798666e-06
Merged-chr7-4503969-4	chr7	4503465	4504465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011618)	TTS (NM_011618)	-2285.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.37264343983467	6.03046091983415	6.52358116043515	6.16660307533476	6.52790663094762	6.46266617165557	0.132472540548653	0.664277423383106	0.907585158243155
Merged-chr1-54586379-4	chr1	54585805	54586805	+	946.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28621.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	5.32542543772331	5.22792772585629	5.19848623359806	5.53408987660277	5.6392350635399	5.29711912978429	0.497120768976061	0.149564260577376	0.515980886194382
Merged-chr8-70541791-2	chr8	70541291	70542291	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	2116.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.79612503290474	5.35008263501089	5.23464541100061	5.14782027787721	5.30543575730812	5.04897523722408	-0.61693904223221	0.104667114328608	0.431742827766851
Merged-chr7-143052088-2	chr7	143051588	143052588	+	898.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	-662.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.32107452906074	5.34604752928786	5.31047450379983	5.6058972745479	5.57598869103756	5.94942628533363	0.727528167853103	0.0313846211038221	0.214633973272526
Merged-chr4-132211102-2	chr4	132210602	132211602	+	716.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 2 of 4)	intron (NM_145393, intron 2 of 4)	1154.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	5.71296149007462	5.81592646487986	6.05783728266326	5.69364002892652	5.57034635434476	5.85143651623407	-0.289943020975624	0.365926646290214	0.751005707138497
Merged-chr2-90501867-3	chr2	90501368	90502368	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-22694.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.5045301400523	4.63801918784791	4.61239726804847	5.02753104978384	4.99721642369309	5.21254495950757	1.10694118310537	0.00494528344611195	0.0607863433836209
Merged-chr14-43921930-4	chr14	43921423	43922423	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053112)	TTS (NM_053112)	1445.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	5.45330104535119	5.12015956671872	5.11732416626556	5.55961339773057	5.18604410392338	5.284260299693	0.209809197337468	0.571684268871631	0.869565381768621
Merged-chr2-57330946-4	chr2	57330453	57331453	+	940.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	92571.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	4.54245492344587	4.95397392342615	4.38848440392402	4.6900281348016	4.62559087777297	4.97548814235559	0.235683455669148	0.601508270458078	0.881943853341137
Merged-chr10-8460265-3	chr10	8459784	8460784	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	58541.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.40992718358934	3.66117898642913	3.59561727962096	4.06023055300224	3.7962095211381	3.72270072754097	1.03540937593895	0.0655896476715896	0.334075569654972
Merged-chr4-126677604-4	chr4	126677116	126678116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011970)	promoter-TSS (NM_011970)	-27.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	7.75823769668045	8.14465734249106	7.82306310323691	7.77782729601389	8.22215231052049	7.72195971066133	0.0178362399771603	0.945738566464703	0.98796006280508
Merged-chr6-136519087-4	chr6	136518562	136519562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	CpG	211.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	7.99669196648985	8.25163703406938	7.65257879357002	7.98485514359933	8.20424253155347	7.81913536893499	0.0279504933468312	0.914564998533567	0.980912729144991
Merged-chr13-45109155-4	chr13	45108652	45109652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-107056.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.48970058611079	5.36064505389044	5.3164989376024	6.34397536704921	6.58395811553687	6.20799665303289	1.76427219966399	2.00912795849017e-08	1.70239836222047e-06
Merged-chr4-12499128-2	chr4	12498628	12499628	+	807.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-327113.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.29654096903651	5.54493137624646	5.42172232664813	5.59691507767327	5.32772019115572	5.39385323673909	0.0315307332674268	0.92666985855787	0.983551822187064
Merged-chr1-58727194-4	chr1	58726679	58727679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-3373.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	8.09575215450136	7.90031295614305	8.02135936129035	7.90588020737156	8.02515283063262	7.95121525906363	-0.063211483367037	0.767309005243265	0.942616128122377
Merged-chr2-124929060-2	chr2	124928560	124929560	+	558.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139067.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	4.35815974119443	4.36568900005903	4.00407602112832	4.13376157501705	3.94648593760367	3.91582965848923	-0.736004591583271	0.139869571284518	0.499796757169209
Merged-chr10-25291506-4	chr10	25291026	25292026	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	Tigger5|DNA|TcMar-Tigger	7637.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.13497079132223	3.87137855042989	4.22919428671596	3.30725586197193	3.40317007661747	3.58383397430347	-2.2877760422041	0.000131157926985422	0.00356530179307514
Merged-chr1-139454677-4	chr1	139454186	139455186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009791)	promoter-TSS (NM_009791)	-87.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	4.192406731863	3.95800548392661	3.76765211263252	3.67533506744747	3.80540445189238	3.7850547926247	-0.734709184674087	0.170778218130735	0.54850480465597
Merged-chr9-96530035-2	chr9	96529535	96530535	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51360.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	5.56480843272291	5.7620992469871	5.20385788933167	6.48305862252405	6.52038455389614	5.79830797958222	1.34488948785987	0.000334811078598584	0.00762215054118495
Merged-chr19-56547610-1	chr19	56547110	56548110	+	742.0	f0_balb.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	512.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	5.98669804929218	6.12223360162272	5.90010492962522	5.8979286708443	5.96087576838139	5.61024530272694	-0.293670771874334	0.345150318900989	0.733666487940844
Merged-chr16-23563511-2	chr16	23563011	23564011	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42696.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	2.60767598579786	2.49980438913985	2.79037451783413	2.60141170646605	2.45791198336485	2.8043741141728	-0.0569569985817971	0.942327535007425	0.987198014918261
Merged-chr10-121460649-3	chr10	121460152	121461152	+	905.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	15598.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.47695606933974	6.59314065840944	6.37827013494963	6.53918851979542	6.5248566396155	6.27651080814624	-0.0500707464450849	0.854589656086313	0.965987623019113
Merged-chr7-132828178-3	chr7	132827686	132828686	+	702.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347629, intron 3 of 3)	intron (NM_001347629, intron 3 of 3)	-14990.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.78225806897877	4.15902787778834	4.46328819378765	4.27548830329958	4.47291743482725	4.21151055250291	-0.41961527803476	0.391321328487086	0.77033345281914
Merged-chr9-105122043-1	chr9	105121543	105122543	+	777.75	f0_balb.idr	Intergenic	Intergenic	9762.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	6.60673078792639	6.52891598813452	6.67613259780652	5.82264328827549	5.58958974411378	5.54397247818252	-1.60732032849144	5.65941781261673e-08	4.30924637617348e-06
Merged-chr9-45405812-4	chr9	45405297	45406297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-280.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	7.89945503692473	7.86306191957932	7.91245280611321	7.54147124733691	7.88876871841151	7.52743856792983	-0.313450528784163	0.181064390279284	0.563309390781554
Merged-chr17-25136474-3	chr17	25135920	25136920	+	891.7666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317404)	promoter-TSS (NM_001317404)	-211.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.44801216816054	4.43739275513082	4.55836578897447	5.57628232528492	5.75524121379725	5.15346780822529	2.2911484739512	1.41556140614902e-08	1.23465443902356e-06
Merged-chr15-73730536-2	chr15	73730036	73731036	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	5606.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	5.92313721193751	5.76861000085233	6.02931103674922	6.02269731131911	5.65616460626809	6.00176453985531	-0.0178548702735793	0.955141546275759	0.989731230168286
Merged-chr6-47911809-4	chr6	47911294	47912294	+	853.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR85c|LTR|Gypsy?	-8774.0	NM_145576	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	3.30131727529976	3.03111499461142	3.51804442658087	3.47929347299266	3.31920837573511	3.31815450135904	0.324273182153031	0.614720377284437	0.887600696218698
Merged-chr16-44124491-1	chr16	44123991	44124991	+	569.0	f1_balb.idr	intron (NM_007508, intron 1 of 14)	MLT1L|LTR|ERVL-MaLR	14768.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	4.1722862925024	4.46142822940294	4.08845641582357	3.83318530515045	3.84910550479355	4.20365597163088	-0.848040239998478	0.0977416948034757	0.416925964185171
Merged-chr11-86545847-2	chr11	86545347	86546347	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199045, intron 1 of 9)	intron (NM_001199045, intron 1 of 9)	856.0	NM_001199046	56427.0	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	5.67983766232834	6.09615756564452	5.91891883232654	5.90873927372708	6.0901599458206	5.72395239061831	0.0279078482054153	0.931487099867383	0.984925910690137
Merged-chr4-144906659-4	chr4	144906160	144907160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	13523.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.97782937356232	6.21996692263789	6.29024173963601	5.95576067077051	5.82692676740366	6.2351579844609	-0.274160832406309	0.374314026940911	0.758058822552447
Merged-chr5-146821518-2	chr5	146820916	146821916	+	814.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11474.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	6.34736127840454	6.01666226903104	6.72728611761459	6.71746014801526	6.87353928480347	6.57910104661144	0.559148805220583	0.0717575796919981	0.351533982396925
Merged-chr4-133468760-2	chr4	133468282	133469282	+	812.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-11351.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	6.49036670523285	6.27788554832641	6.09762267237992	5.31673800426757	4.88013348705203	5.02709767485653	-2.27747957216993	8.31501667344122e-11	1.12500147538813e-08
Merged-chr1-131933672-4	chr1	131933163	131934163	+	788.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	23205.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	4.30518430812442	4.22446606011704	4.41045751770112	4.65891744838935	4.70935482296362	4.75826032774228	0.997504855613125	0.0187871284386031	0.155168984406751
Merged-chr2-163710993-4	chr2	163710485	163711485	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	16948.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.20508581626317	4.03572974206183	3.89113301465346	4.09936422467409	3.83170854204807	4.64386214503857	0.486611810341611	0.380860848395518	0.762849943367586
Merged-chr6-124913441-4	chr6	124912951	124913951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026988)	TTS (NM_026988)	-1746.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	6.4489144739044	6.35576100826484	6.23463423353853	6.13961823120899	6.46379044376732	6.2322626479879	-0.0991425323607446	0.728784169865675	0.930478966998914
Merged-chr5-21372087-3	chr5	21371572	21372572	+	886.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	-601.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	5.93024395955016	6.06026457849927	5.35476519723691	6.06309844489214	6.10191043201721	5.70742185747461	0.255166013026157	0.47860341342747	0.823834402333981
Merged-chr11-76253305-3	chr11	76252800	76253800	+	972.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9564.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	2.74642411489652	2.95841966420802	2.90853952684229	2.90824364005186	2.79705803342867	2.73265255168939	-0.291699848385374	0.685153413195585	0.916175954737346
Merged-chr3-127560714-4	chr3	127560253	127561253	+	911.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 4 of 25)	intron (NM_197997, intron 4 of 25)	7264.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	3.6980980970482	4.18635558773888	3.89733744205101	4.11518094105028	4.20616771863089	4.16337041756056	0.616851992622637	0.235918103266609	0.632261024837056
Merged-chr19-36928174-4	chr19	36927654	36928654	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2075.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	7.34001974374009	7.61948915717235	7.19917922722455	8.23483573567147	8.48522925490241	7.63232648094354	1.10236853046701	0.000182907611056313	0.00465139868605554
Merged-chr14-27428784-4	chr14	27428288	27429288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114879)	promoter-TSS (NM_001114879)	-46.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	7.6302417757701	7.88626674149162	7.92761021224776	7.62182083082315	7.75443898642597	7.96174946229424	-0.0513302074471808	0.828101538465669	0.959633697141491
Merged-chr9-27030103-4	chr9	27029634	27030634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	-40.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	7.2114728710912	7.57800532513958	7.44852559461281	7.30330401592686	7.43238081793463	7.42284350616603	-0.0507214704350626	0.833779922352048	0.961104751385188
Merged-chr16-91838239-2	chr16	91837739	91838739	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 17 of 28)	RSINE1|SINE|B4	93391.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.29090294432206	4.92606535936798	5.65946391395069	5.45158395459976	5.5502636602093	5.64546181013004	0.456488865238705	0.231548688805733	0.627507317118448
Merged-chr15-85379372-2	chr15	85378872	85379872	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 5 of 11)	intron (NM_016843, intron 5 of 11)	42991.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	2.74207133395889	2.66585359163042	2.82569685082196	2.59250526891257	2.55834865861305	2.65490109569545	-0.80245600926424	0.286010973527301	1
Merged-chr10-4611546-3	chr10	4611045	4612045	+	830.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302532)	promoter-TSS (NM_001302532)	-444.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	4.75056696384653	4.91482376088396	4.84355925311293	4.60845897646151	4.55212893581171	4.50817673923026	-0.658633379703729	0.103663290197991	0.429327313264367
Merged-chr11-11667725-4	chr11	11667158	11668158	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18267.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	5.40728788004135	5.21545390943024	5.57250454800342	5.38431928017325	5.51471540340899	5.31387932265582	0.0342662194549477	0.92132573341391	0.982526400261012
Merged-chr1-33903837-4	chr1	33903327	33904327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	3794.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	7.270840341088	7.11646525728594	7.26703228671656	7.02634184926082	7.45315544616114	7.31315820912092	0.0932748446595805	0.711711821538159	0.92478339732604
Merged-chr7-28597499-1	chr7	28596999	28597999	+	548.0	f1_balb.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	685.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	3.93724175087761	4.06610300194753	3.67087033073591	3.82286775361518	3.60128946965776	3.7428199077529	-0.605655078817825	0.267608403918054	0.664830265225971
Merged-chr1-131090395-4	chr1	131089893	131090893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7450.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.40999041896324	7.25346664092635	6.65711616824867	7.07454112823716	6.99484267044679	6.75112788172786	-0.310758045942634	0.29930538997874	0.696061035133241
Merged-chr15-50763544-3	chr15	50763033	50764033	+	917.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	125516.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.67187381211012	4.71200879454933	4.91824250074304	4.99746052462637	5.38586728617827	4.94716491795997	0.816967200189788	0.0408262238698823	0.251970659825335
Merged-chr10-40054145-2	chr10	40053645	40054645	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 4 of 5)	intron (NM_001114332, intron 4 of 5)	-28877.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	2.88790512803912	2.67652883841042	2.86200873169567	2.83389074094869	2.66295252862571	3.21538106515006	0.522403420169688	0.490290130060645	0.830042606694236
Merged-chr7-143548319-4	chr7	143547807	143548807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	521.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	7.98556603664852	8.4009088355819	7.99310750701866	8.12703171630808	8.13247166245695	7.83150699910701	-0.146776525331923	0.549060504233748	0.860170324332681
Merged-chr12-100439460-7	chr12	100438947	100439947	+	987.0476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	ORR1E|LTR|ERVL-MaLR	81375.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	6.18455679697102	6.55812028447637	6.3221818563877	6.07478663892866	5.65879044795562	6.14145483778212	-0.683324299524105	0.0317370638126837	0.216067550787578
Merged-chr3-105001571-4	chr3	105001062	105002062	+	962.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163332)	TTS (NM_001163332)	-39853.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.94633943028858	4.76608616250628	5.08032888335248	4.83560829814633	4.51768661999527	4.75744099800779	-0.515538047266906	0.206697251647212	0.597309359759271
Merged-chr3-67583341-2	chr3	67582833	67583833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	565.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	7.46154198355979	7.94803667138316	7.53758831985328	7.40719656547602	7.56521689541567	7.0224902921291	-0.453536065791218	0.104787502467825	0.431983644181703
Merged-chr17-5728912-2	chr17	5728412	5729412	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-69745.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.65661328331232	3.23756425884765	3.1444905326706	3.20839296119058	3.03812214081686	3.39376228754888	-0.617106560037565	0.361744593274201	0.747458707295016
Merged-chr6-97448780-2	chr6	97448280	97449280	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	10506.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.48198662070711	6.42439045079619	6.70893250118493	6.25416168374812	6.51105353504469	6.61156522789433	-0.115707703014512	0.67989617149452	0.914056754309378
Merged-chr12-70227003-4	chr12	70226546	70227546	+	924.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	637.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	5.6340012568304	5.68322622580564	6.26712562597741	6.00214003755023	5.99674226475219	6.11271194347385	0.272678198659519	0.41864432793604	0.788726823651631
Merged-chr1-106139387-2	chr1	106138887	106139887	+	595.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32137.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	2.70612977544214	2.59816799580676	2.76372869414877	2.63386596831768	2.4593125010574	2.83641677109371	-0.235565225968135	0.761486710587389	0.941258867861232
Merged-chr3-89843333-4	chr3	89842839	89843839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	11969.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	4.697735590834	4.37416553473843	4.78872399354257	4.74816330047699	4.51787772726314	4.8534657271056	0.190734687093016	0.660224607117247	0.905906890165946
Merged-chr11-75348423-4	chr11	75347932	75348932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102611)	promoter-TSS (NM_001102611)	-1.0	NM_001102611	319822.0	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	6.44748451987472	6.73353350013067	6.37488799175978	6.62280514910435	6.80692410084409	6.31239119069142	0.117379643898822	0.690388094759078	0.917823389001164
Merged-chr5-139328540-2	chr5	139328040	139329040	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3076.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	3.9082630503229	3.76784873745067	3.77152663857789	3.66972483880452	4.04515855985832	3.62269236063077	-0.0399887371626814	0.942830431994052	0.987202156853573
Merged-chr2-155382185-4	chr2	155381698	155382698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178111, intron 1 of 3)	CpG	342.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	9.16376960361674	9.15177258684072	8.63916772706419	8.6619329638905	9.15050127526721	8.53850099244119	-0.263885511654884	0.328685162994863	0.720892905331766
Merged-chr6-58999151-4	chr6	58998646	58999646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	25356.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	5.83476583323905	5.78442828013588	5.63570038673401	5.51299643999374	5.59737536386621	5.40259867802453	-0.457120327906315	0.154987680119067	0.52436427125914
Merged-chr15-75929451-2	chr15	75928951	75929951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 1 of 10)	intron (NM_001357005, intron 1 of 10)	279.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	5.34444920965675	5.43070331816514	5.56839920041637	5.11544573743626	5.20146620621355	5.11568236092301	-0.592004229077613	0.0885359364332555	0.394986767397905
Merged-chr11-29546366-4	chr11	29545858	29546858	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133767)	TTS (NM_133767)	-1592.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	3.87819987655235	4.0588709382126	4.27312219644936	3.88017751447878	4.19600949155043	4.02549862632953	-0.0746423764440688	0.883972822877976	0.973466734537782
Merged-chr5-34543319-4	chr5	34542831	34543831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-34.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	6.18427047149087	6.0542803436297	6.44297486978497	6.00120739876857	6.02759331394697	6.2264209323785	-0.245301683453428	0.410717400887855	0.783578059638571
Merged-chr10-94526001-4	chr10	94525505	94526505	+	775.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	Tigger5|DNA|TcMar-Tigger	11148.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.11005152152701	5.11418207030413	4.90277071635633	5.17310637352555	5.44200165492357	4.88990610527513	0.313100927852916	0.423625011414745	0.792082736807957
Merged-chr10-95803356-3	chr10	95802856	95803856	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-137307.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.12325090045789	3.97074971009925	4.78043116417677	4.38639145808313	4.50498168393688	4.4765711442983	0.322946367431036	0.531460835280503	0.851631036128724
Merged-chr14-64667178-1	chr14	64666678	64667678	+	689.0	f0_balb.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	14647.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	3.56960749668507	4.01379921422125	3.72802755007019	3.57664631922597	3.33035585674084	3.79792207122119	-0.724047006443748	0.227479455962177	0.622644333537758
Merged-chr15-66856747-4	chr15	66856250	66857250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24921.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.95833453078465	4.79472949750053	4.91369892880954	4.86537598103156	4.9010020824587	4.79060162397825	-0.0702899934432827	0.854729197160192	0.965987623019113
Merged-chr14-105177369-4	chr14	105176858	105177858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134077)	promoter-TSS (NM_134077)	-31.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	7.56898457257783	7.34545642084916	7.2722768530593	7.63267673215335	7.31914831768243	7.18268263241708	-0.0142979511157245	0.955516281391641	0.989763164889919
Merged-chr12-102433759-2	chr12	102433259	102434259	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	PB1|SINE|Alu	6054.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.08256744734159	6.37441428099434	6.39416451477021	6.58691825073634	6.46426343215451	6.053471554145	0.180388178297192	0.554936278637152	0.862989905297353
Merged-chr6-99649430-4	chr6	99648859	99649859	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 2 of 6)	intron (NM_025829, intron 2 of 6)	17412.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	3.83582864430018	3.82914737487195	3.91357086924056	3.74107015120774	3.69934795927886	3.73168976110623	-0.439486630926277	0.399142653759198	0.775688105708038
Merged-chr17-5220156-2	chr17	5219656	5220656	+	977.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	MER53|DNA|hAT	198611.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.42981509849432	4.63224570475141	4.61047711240945	4.78643847467896	4.99233790292145	4.67759029470978	0.647889554201996	0.117706706369791	0.458033934603074
Merged-chr9-54507785-4	chr9	54507273	54508273	+	995.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-6147.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	3.00835806339257	2.80395756507683	3.04499708657841	2.84844032713643	2.72340389612471	3.1718292271995	-0.1548266929091	0.831533931446126	0.960464332375456
Merged-chr9-44231931-2	chr9	44231431	44232431	+	873.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	Lx4A|LINE|L1	2115.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	6.15399701930423	5.94914992544986	6.29542088224477	6.53102344298132	6.69867716662994	6.53857608721838	0.764637447878604	0.00637329584418151	0.0729992454908167
Merged-chr8-119798345-4	chr8	119797850	119798850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19934.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	4.2307947502603	4.33609544863048	4.74964830501539	4.26795167868614	4.36274340834357	4.34945755956954	-0.305194284673776	0.51459084679939	0.843107848235413
Merged-chr9-57131253-4	chr9	57130751	57131751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102289)	promoter-TSS (NR_102289)	39.0	NR_102289	76794.0	Mm.472839	NR_102289	ENSMUSG00000086728	Man2c1os	2410133F24Rik|AI851351	mannosidase, alpha, class 2C, member 1, opposite strand	ncRNA	7.62030907007727	8.19847632695901	7.86157391291286	7.5128742320485	7.68206318017377	7.9410202230638	-0.284500038113885	0.286213327515051	0.683472010443741
Merged-chr15-77841408-4	chr15	77840904	77841904	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	CpG	771.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	7.53676666781991	7.9971251196399	8.1679288179638	7.76927559890927	8.11385919628188	8.32569072559908	0.231655045235838	0.404625042397344	0.779747209915063
Merged-chr4-19892360-4	chr4	19891854	19892854	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	30212.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	5.25073953339449	4.90458322621663	5.27482232778064	4.83297626594505	5.14688289121539	5.53147361085107	0.090031090670046	0.826182050914646	0.959118663254492
Merged-chr2-160269518-4	chr2	160269005	160270005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57989.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.87961602733238	5.68548086168694	5.91451928815933	5.78380089589235	5.73732406722862	5.78151079260021	-0.10641243582482	0.728763517900541	0.930478966998914
Merged-chr3-68708395-4	chr3	68707870	68708870	+	989.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16946.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	2.98238577302133	3.1776144906201	3.03208462918476	2.95358082798103	3.01262306327138	3.21752752959196	-0.0358092269400948	0.957431831779327	0.98996830630481
Merged-chr1-170709116-2	chr1	170708616	170709616	+	608.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	64584.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	6.23774009774555	6.02241954052029	6.35169435490631	6.02823735832729	6.29075361431934	6.17570791367054	-0.0500674258690001	0.864988560149343	0.968537626667382
Merged-chr4-147401047-2	chr4	147400527	147401527	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RLTR10-int|LTR|ERVK	-152250.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.17102995165813	3.27565876927095	3.34006771006553	3.40378097950496	3.20606750630216	3.85609124326088	0.936725218560397	0.149430236645971	0.515903536402553
Merged-chr11-70495151-2	chr11	70494651	70495651	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10123.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	2.93155301443747	3.31492768110072	3.24470496182383	3.04538316798585	3.29789453154964	3.25993796928504	0.135351632329482	0.840807114613266	0.962819298477451
Merged-chr13-9249876-4	chr13	9249381	9250381	+	938.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26644.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.04959766133016	4.83405694461812	5.19890630816656	4.95264579226187	5.32636929812106	5.09926498332244	0.244795720818003	0.526438755114768	0.849433518128594
Merged-chr14-15065366-4	chr14	15064858	15065858	+	955.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	244543.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.48785107354131	4.44048280985103	4.39815392402765	4.80408549050159	4.77741479213986	4.90528959557653	0.908684915016858	0.0267505119940264	0.194721074446588
Merged-chr17-6827368-4	chr17	6826870	6827870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44590.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.80679877861912	8.11361557488654	7.4999172176519	8.01187801586094	8.07974538646841	7.27433873804576	0.0127153361729611	0.967145518610036	0.992479541792373
Merged-chr6-87447340-2	chr6	87446840	87447840	+	725.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	18346.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	3.51748181463786	3.40431542030618	3.33813386068594	3.32042871937681	3.23732324856772	3.40945837769581	-0.419930946159768	0.485169311199582	0.827363359345484
Merged-chr1-150376690-2	chr1	150376190	150377190	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357579, intron 9 of 13)	Lx8b|LINE|L1	-16148.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	2.86079613930887	2.91094691367868	3.32735114359159	2.91056210365421	2.63570211196641	3.07866247329102	-0.751948622765457	0.321971720181002	0.715384462470548
Merged-chr7-97018165-4	chr7	97017671	97018671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 6 of 13)	intron (NM_153591, intron 6 of 13)	-63580.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.23957203562914	4.34326179082544	4.49284713802775	4.66905675474331	4.84641434801374	4.83142997975827	1.05567255223392	0.0125506466600442	0.117961618354112
Merged-chr16-32972686-4	chr16	32972195	32973195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 6 of 20)	intron (NM_001081255, intron 6 of 20)	58595.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	4.8935130425111	4.76083169577303	4.32123013029931	4.58057550078723	5.10303607253329	4.83242147664793	0.38978082009048	0.397312228175996	0.774186958204669
Merged-chr10-94482257-2	chr10	94481757	94482757	+	636.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	-32600.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.77021649214003	3.65198447430459	3.64564005163864	3.37430349418819	3.36594232423022	3.55697703988304	-0.960883932175785	0.0936106093180881	0.407509223933344
Merged-chr10-37398985-2	chr10	37398485	37399485	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-260059.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.20428994091543	4.02901879346867	4.49593884168809	4.41972892622462	4.42250268553333	4.71172034468705	0.707963935429639	0.132178017314664	0.486197270886281
Merged-chr11-98589009-2	chr11	98588509	98589509	+	995.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-1764.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	4.21965563050604	4.13782304018222	4.14274847988677	4.37181733982987	4.24217069380098	3.95938900982723	0.116625863645542	0.809078357318082	0.954721853010197
Merged-chr9-86592858-4	chr9	86592366	86593366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20813.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	4.22660937364422	4.38583426572637	4.08266963818689	3.74075773181701	3.71170943530594	4.00672031603353	-1.2917648489807	0.011908158135857	0.11364308087721
Merged-chr6-71273898-3	chr6	71273408	71274408	+	891.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	1889.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	3.43536724913598	3.58382234738862	3.26945638470371	3.55594177986292	3.30500542413375	3.45940655701141	-0.0051455272498371	0.993247298030133	0.998651348330892
Merged-chr2-27692864-4	chr2	27692372	27693372	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	15671.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.9303402710742	5.94760485498684	6.33161775683005	5.94269479539494	5.98810242339547	5.96202795563095	-0.182554683898765	0.551031521473589	0.860924025738859
Merged-chr3-59211922-4	chr3	59211423	59212423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-1041.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.58209609562251	7.45022182904097	7.24733530398388	7.35922822880422	7.58293774297974	7.07204842216472	-0.107677627408232	0.681443054345628	0.914693263933768
Merged-chr12-80810296-3	chr12	80809832	80810832	+	826.305542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	19800.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.35923879482109	5.50655645987763	5.6122020242876	5.71035197842759	5.70188628554867	5.92001590222684	0.527531043997562	0.102644167679925	0.427236732425048
Merged-chr3-90052658-4	chr3	90052190	90053190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165984)	promoter-TSS (NM_001165984)	-112.0	NM_001287086	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	7.96186060584148	8.03861787403758	7.70616870528477	8.05586181196165	8.21726383640141	7.87616694081397	0.208945943657671	0.372336562983447	0.756141379267486
Merged-chr1-156614361-1	chr1	156613861	156614861	+	727.0	f0_balb.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	55574.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	4.19928207539737	4.13458900170397	4.07338560160362	4.0077575985273	3.92120364760915	4.14184735006078	-0.351784966502378	0.46666413359714	0.817615371606814
Merged-chr4-133546052-4	chr4	133545523	133546523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010948)	promoter-TSS (NM_010948)	4.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	7.01565642301193	6.99312978765074	6.95279988044972	6.8919618835341	6.90224716752887	6.50993752486913	-0.302347557405366	0.247552805705479	0.644484648701277
Merged-chr14-55854548-3	chr14	55854042	55855042	+	564.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040072, intron 1 of 7)	intron (NM_001040072, intron 1 of 7)	427.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	3.39758670445261	3.40071978812084	3.49521067364221	2.97138118857453	2.68372921949126	3.41076851818541	-1.37341038294419	0.333856991013938	0.724614206827878
Merged-chr7-64750364-2	chr7	64749864	64750864	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291166, intron 14 of 14)	intron (NM_001291166, intron 14 of 14)	122676.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	1.57540331806046	1.58319892279006	1.76080637549858	1.39561390162337	1.48999882304505	1.42676021446434	-2.38583706754651	0.061606805837514	1
Merged-chr16-30520713-2	chr16	30520213	30521213	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	29865.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	3.14406646208107	3.30302408628175	3.10214223035828	2.76047145004554	2.97192331095345	3.1741417448808	-0.959408565278652	0.176224617460416	0.556457992059754
Merged-chr11-121748510-4	chr11	121747993	121748993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46066.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.82487946904136	6.54060000784413	7.07712671983402	6.86735885327967	6.75636994476993	6.78274212719948	-0.0320334946100013	0.907377982458763	0.97890658599249
Merged-chr16-87689037-4	chr16	87688534	87689534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.40143277491651	6.51636932726023	6.76752943786048	6.2551736906621	6.49966149747273	6.36058629088943	-0.293696316967194	0.297425090273705	0.694108042302854
Merged-chr9-16381227-1	chr9	16380727	16381727	+	555.0	f0_balb.idr	Intergenic	Intergenic	-2996.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	3.14215628916887	3.33671488982414	3.37381565031879	3.24925547508986	3.28312085123763	3.27798822558048	-0.059912267201311	0.922753458640457	0.982621045978137
Merged-chr14-61789213-4	chr14	61788697	61789697	+	905.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-106824.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.48957663100965	2.52495431074471	2.3843750347598	2.76589240746319	2.66772776767959	2.84683925078096	1.66846259699108	0.0398786747778452	1
Merged-chr19-61084259-4	chr19	61083764	61084764	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56576.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.91622174080826	3.69173032771235	3.87655414986425	3.36321708534322	3.16078587408126	3.30267354733022	-2.14827988869178	0.000521857566295363	0.0108294381457026
Merged-chr1-80660626-4	chr1	80660136	80661136	+	804.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	4716.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.1176320892494	6.58002797643552	6.44360521295889	6.45520377391128	6.62056089298377	6.44823117173572	0.194402518423468	0.502135487093001	0.836318301786851
Merged-chr2-153319419-4	chr2	153318902	153319902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 2 of 8)	intron (NM_008444, intron 2 of 8)	26408.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	5.66688700428095	5.48001041097008	5.52276443099033	5.585633359285	5.6972502016578	5.79734590363501	0.24538644362156	0.444157576351745	0.804087368110091
Merged-chr4-45010971-4	chr4	45010435	45011435	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173399, intron 1 of 1)	intron (NM_173399, intron 1 of 1)	1477.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	6.30907606843274	6.50032489032965	6.07122830048266	6.8278948287255	6.96857874023384	6.37809921723214	0.710095198719139	0.0211924461048741	0.167785724772578
Merged-chr10-95298027-4	chr10	95297516	95298516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25693.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	8.48429301366732	8.55874006834342	8.10454215308102	8.26705450490663	8.7672831629658	8.45328534523077	0.158667203106379	0.529132302973191	0.850783394508082
Merged-chr5-18035483-2	chr5	18034983	18035983	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	72913.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.22936458006739	3.28657927926324	3.50280044226793	3.18905278378784	3.23988979980587	3.4176590476497	-0.232044679495493	0.708522996198184	0.923708659245088
Merged-chr11-17001706-2	chr11	17001206	17002206	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	MLTR14|LTR|ERV1	7012.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.18562173992396	7.32385192481054	7.30566373017343	6.86597225990026	7.24190080252209	7.61716613363311	0.00143137605089948	0.995960090090422	0.998961028701257
Merged-chr2-75763469-4	chr2	75762952	75763952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58789.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.4396267498624	5.59491791663882	5.52301318503877	6.07049992090935	5.95582763112639	5.52618956789079	0.658712736509997	0.0498277892683697	0.284016350831793
Merged-chr5-115634456-1	chr5	115633956	115634956	+	559.0	f1_balb.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	2469.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	3.30893515567698	3.27871620828736	3.36980895806803	3.29458145084555	3.04366465036076	3.74007594372148	0.257696766637815	0.699222149039384	0.920539793637471
Merged-chr3-96160381-4	chr3	96159886	96160886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-1584.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	5.85850026112333	5.988684394669	5.48576711607969	5.2224696472936	5.62506639926964	5.48860474291984	-0.635901673733848	0.0730322467000004	0.355102389026684
Merged-chr3-51182711-4	chr3	51182222	51183222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41725.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.53095608236264	4.71065105143172	4.44798379762472	4.77657641584488	4.79448702161745	5.01802120940102	0.661468853547113	0.110219887094748	0.44355436116098
Merged-chr12-69446623-6	chr12	69446132	69447132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28918.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.90049742007901	7.40345559555654	7.57395338416802	7.53663012235686	7.3828131442812	7.12942110173619	-0.414109417025644	0.120303173374043	0.463771641846234
Merged-chr5-65335712-4	chr5	65335229	65336229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347358)	promoter-TSS (NM_001347358)	-90.0	NM_001347358	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	6.08805298472514	6.24341823309362	6.22992218789262	6.03501936141835	6.33310500467132	6.05378095732737	-0.0483423623276289	0.868911328301206	0.969755809171886
Merged-chr13-92275133-1	chr13	92274633	92275633	+	546.0	f1_balb.idr	intron (NM_001311120, intron 13 of 23)	intron (NM_001311120, intron 13 of 23)	-79650.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.36566064448179	3.3511198286999	3.13006638721556	3.19482883349062	2.99626393958475	3.53513120885334	-0.140660244894907	0.83477157512831	0.96138272464184
Merged-chr17-31005073-4	chr17	31004581	31005581	+	962.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	50398.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	5.43870052729779	5.17637190409724	5.8081341079207	5.85834361137537	6.07236861035365	5.9621841731249	0.884916300632052	0.0105057508052277	0.103955584849731
Merged-chr13-112927019-2	chr13	112926519	112927519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	361.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	6.53068540981301	6.73350178392336	6.55477710080712	6.79024246651033	7.17528223250142	6.52290994209279	0.406484770238105	0.16773311031022	0.543771999165935
Merged-chr3-94933023-4	chr3	94932554	94933554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009150)	promoter-TSS (NM_009150)	-29.0	NM_009150	20341.0	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|MTO|SBP56	selenium binding protein 1	protein-coding	4.58179147061254	5.01625644275177	4.43455500819088	4.85551339819618	4.79791263306856	4.91624806848411	0.313689403514684	0.471068446080902	0.819876657912896
Merged-chr11-50236757-4	chr11	50236265	50237265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132732, intron 4 of 4)	CpG	1767.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	5.88429794564348	5.69073438990341	5.9091331901476	5.58221771461449	5.53192376959892	5.82916630433821	-0.335512506653463	0.293804776547714	0.690424156263798
Merged-chr17-31071073-4	chr17	31070587	31071587	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	13393.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.8191991122125	6.50375268310794	6.68389345742692	6.55750655225003	6.74364122731975	6.44773287616936	-0.122334156309346	0.655431184542773	0.904264860530169
Merged-chr8-35557024-4	chr8	35556529	35557529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30769.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	5.1119440754636	5.22157139312564	5.54365643710563	5.57185354640286	5.79868454332519	5.4336118968803	0.631677113786052	0.0758138243234219	0.362539808419832
Merged-chr1-165609784-3	chr1	165609307	165610307	+	887.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	B1_Mm|SINE|Alu	24734.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.76176812503737	3.5021694556598	3.60323703585747	3.41442932845758	3.21606746175446	3.16067730341207	-1.41918032914474	0.0236393104705559	0.180302169760952
Merged-chr3-16185157-2	chr3	16184657	16185657	+	659.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1992.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	5.60457731178239	5.53658805083336	5.02470524334243	5.57738769312418	5.42821287224567	5.16804777537017	-0.0352206077924634	0.926465415801399	0.983508130922951
Merged-chr1-174043882-4	chr1	174043379	174044379	+	922.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146717)	TTS (NM_146717)	1946.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	5.14089988039036	4.50556275251393	4.78798271788781	5.30054986461021	4.84714866671188	4.89399364018445	0.408842725168178	0.354909770174745	0.741955986048444
Merged-chr7-123293192-4	chr7	123292693	123293693	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	76722.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.51620492181691	3.84845632872117	4.15712317287692	4.58362872685819	4.55336377349876	4.41429924420202	0.80596580363025	0.111189012569947	0.445419833321467
Merged-chr5-135468019-2	chr5	135467519	135468519	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73473.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	7.35411924066035	7.19499999689059	7.38595925400552	7.13239307337899	7.65635565547148	7.28840798085876	0.111945445666047	0.669436837795333	0.909651349706443
Merged-chr6-135237523-3	chr6	135237045	135238045	+	882.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010352, exon 7 of 7)	exon (NM_010352, exon 7 of 7)	10339.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	2.93874576380355	2.51507999563206	2.82999608108125	2.69143404148592	2.5085544875507	2.59401073417629	-0.981934498626799	0.221064069774369	0.61561513090473
Merged-chr3-116129343-5	chr3	116128732	116129732	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 1 of 8)	intron (NM_011693, intron 1 of 8)	456.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	7.1598903479842	7.07088999922801	7.00328303848308	7.5340002476511	7.56682452882068	7.27679099118103	0.583026824706311	0.0150356055104692	0.132938334216887
Merged-chr3-97991214-2	chr3	97990714	97991714	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22324.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.86850168917589	3.81351875672492	4.00688764521406	3.70153136219567	3.57581119952741	3.44915789213411	-1.04133366615374	0.061255907894115	0.320948402748789
Merged-chr14-45689652-1	chr14	45689152	45690152	+	640.0	f1_c57bl6.idr	Intergenic	Intergenic	-31509.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	2.12350756106631	2.06010310123091	2.2021048790512	2.53450185175408	2.36202036759762	2.6665961122239	3.07596954404378	0.00236128515973511	1
Merged-chr1-170962502-3	chr1	170961986	170962986	+	619.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010187, intron 5 of 6)	intron (NM_010187, intron 5 of 6)	13585.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	3.07580944583869	2.93719659852635	3.11108928885366	2.90788043853986	2.70923291437967	2.95045445828425	-0.91319976587642	0.196045244951895	0.58384154409296
Merged-chr13-20140239-4	chr13	20139750	20140750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	49743.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.1215689707631	4.78506385653646	5.0656237043996	5.1027312853445	4.93571597541867	5.06185707216983	0.0770596220836855	0.840253957648993	0.962819298477451
Merged-chr4-63400072-6	chr4	63399540	63400540	+	884.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1800.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	7.60335970245704	7.60303993464484	7.59532360806891	7.69644710283384	7.85192161089287	7.29868898923108	0.0678684986194406	0.785942525497871	0.948259344038669
Merged-chr16-87697626-2	chr16	87697126	87698126	+	964.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.54201239144065	2.40489369750245	2.46507395265589	2.46643885507882	2.30195974965252	2.60210828147465	-0.0906642942285633	0.911522555919073	1
Merged-chr19-4145976-2	chr19	4145476	4146476	+	843.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_206973)	TTS (NM_206973)	-2687.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	5.60364796254994	5.69190600793891	6.13099817339121	5.67167681891045	5.8474156893224	5.93809823952146	0.00872013289195417	0.97923522089515	0.995177657748265
Merged-chr16-58502091-4	chr16	58501603	58502603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	21323.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.55637794934266	7.16192550119717	7.25621671429563	7.42409255301259	7.63678473890921	7.61568213092213	0.327710789448007	0.186658976953224	0.571348871080751
Merged-chr8-77116904-4	chr8	77116402	77117402	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	214394.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	5.54088634069988	6.33277713417177	5.19834600917644	6.07170700289324	6.21363337146911	5.4156243924051	0.27797579196757	0.711993973742294	0.924891945289204
Merged-chr4-99368261-4	chr4	99367766	99368766	+	934.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174119.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.4126892253257	4.34586254807493	4.13481644296633	4.77124886898678	4.51369050699679	4.61611118803366	0.811171452732442	0.0695042433235307	0.344983839087589
Merged-chr16-30790233-4	chr16	30789737	30790737	+	959.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	190514.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.19869707284869	5.98956018910785	6.56947881621864	5.92138291706349	6.21622819328115	6.26318110978613	-0.20599634892725	0.520035481091893	0.846136492496092
Merged-chr7-46922133-2	chr7	46921633	46922633	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-2164.0	NM_021884	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	3.39698790977956	3.48997106331315	3.65566830026445	3.77647185283884	3.6595679738029	3.87354612455452	0.888085409971936	0.112560286040341	0.448241038651517
Merged-chr6-72426163-2	chr6	72425663	72426663	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 7 of 14)	ID_B1|SINE|B4	11855.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	2.81004444478356	2.69632969282725	3.35565718387011	2.93542295048618	2.9002402960005	3.22018985900941	0.178389700394411	0.815701787962013	0.956465653447018
Merged-chr13-41017173-4	chr13	41016641	41017641	+	856.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025387, exon 2 of 6)	5' UTR (NM_025387, exon 2 of 6)	891.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	6.92924245925455	7.35268577526289	6.79694348979399	7.19126738808113	7.35165297252214	6.87154460595826	0.156351015523783	0.590088007440746	0.877100187719802
Merged-chr1-181256443-4	chr1	181255970	181256970	+	954.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44492.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.51212611752811	6.78754112435427	6.9998117891292	6.81838794735192	6.76154954928393	6.89773120360733	0.0781327032189702	0.773101937370769	0.943981747443949
Merged-chr15-59863786-1	chr15	59863286	59864286	+	605.0	f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-68827.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.33573688488037	2.99655346979378	3.2487396066205	3.0484400929672	3.17375905791029	3.3197578525948	-0.0775363279505467	0.906359944289048	0.978671142543513
Merged-chr15-97372725-2	chr15	97372225	97373225	+	861.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	RMER4B|LTR|ERVK	-125438.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.67979077780157	5.4783675809952	5.74009280049604	5.92136564619868	5.96905939946507	5.61120720022357	0.404735692430268	0.211475635362167	0.603945120913907
Merged-chr2-181581180-4	chr2	181580699	181581699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164597)	TTS (NM_001164597)	774.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	7.82447508402724	8.08389136245577	7.89900505465975	7.94620745390318	8.19731410894641	7.72623330441391	0.0533913601748284	0.825603383528734	0.958871344165038
Merged-chr6-135297346-1	chr6	135296846	135297846	+	821.0	f1_c57bl6.idr	Intergenic	Intergenic	13038.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	5.57240279277239	5.79105668830414	5.41899223993392	4.69111116233993	4.89616846397448	5.51032504759921	-1.06910081240876	0.0102551923162797	0.102205538657683
Merged-chr13-22043101-4	chr13	22042594	22043594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	-136.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	6.55000216829573	6.62727693994269	6.75406143326356	6.54038641160321	6.94996869490062	6.93973400849001	0.288443179724789	0.291451868002303	0.689089386291402
Merged-chr17-21517058-4	chr17	21516712	21517712	+	985.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18327.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	5.66569886394079	5.88464006945659	5.79815281242269	5.54689543219369	5.57424871625978	5.73403027726485	-0.316256452862117	0.316887998337515	0.710824527206257
Merged-chr7-125604470-2	chr7	125603970	125604970	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	1041.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.04028344449239	3.25606918182256	3.3165324966017	3.86311696470416	3.57874798299692	3.44599523435724	1.78843914490816	0.0056993065330352	0.0671426287689467
Merged-chr6-88827371-2	chr6	88826871	88827871	+	844.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	14564.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	6.64801515643723	6.54186983494085	6.40361742290045	6.45841484611859	6.95736187167037	6.42473186458029	0.178561646199989	0.549252518980432	0.860260580493992
Merged-chr13-94364779-2	chr13	94364279	94365279	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	5819.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	2.99243178700925	3.13456934668057	3.02779294356112	2.79132022932333	2.82872037863328	2.72591198827176	-1.33635650835996	0.0642187210630222	0.330164192313492
Merged-chr1-131976763-4	chr1	131976279	131977279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145977, exon 2 of 5)	5' UTR (NM_145977, exon 2 of 5)	6170.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	7.72941322892209	7.84046319574167	7.77640044801986	7.57092169208958	8.14340276777386	7.66375364348482	0.0644463626246975	0.802050327803968	0.953140673482712
Merged-chr12-3868273-4	chr12	3867798	3868798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6054.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	8.01556109452354	7.76293985740014	7.60532803244711	7.66416756118961	7.66618467476949	7.45799229405754	-0.299230920571048	0.2124951703067	0.605065703339315
Merged-chr5-120570428-4	chr5	120569943	120570943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	18170.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	5.84890343334355	5.80745957095037	5.76359213971021	5.6462825711885	5.5173047765706	5.49252765893967	-0.468399749667308	0.133845077365256	0.489129131600343
Merged-chr4-148656176-4	chr4	148655679	148656679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	12862.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	5.07360645208153	5.21964052451802	5.05191048518714	5.65550167776421	5.84801610589283	5.82836317155052	1.26547771950426	0.000180455781140762	0.00459888656574596
Merged-chr4-45494220-3	chr4	45493727	45494727	+	776.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	36601.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.43123861294515	3.03286592764682	3.53001249454992	3.25248929095658	3.28660421731352	3.15836546704994	-0.433514662556958	0.512484443821038	0.841977759378055
Merged-chr4-140990480-2	chr4	140989980	140990980	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	3607.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	4.74534744827045	4.82483105542991	5.08529800919395	4.41050104167397	4.16151804992758	4.50471250617086	-1.29554351340918	0.00317023604028824	0.0439312349641459
Merged-chr12-17750558-2	chr12	17750058	17751058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	59749.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.21304736695246	2.76060251966549	3.2582071743889	3.17552468923232	2.85580851948593	3.4850763917622	0.415306719343591	0.583203313244463	0.873985687062267
Merged-chr2-35211725-7	chr2	35211222	35212222	+	878.496582	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-10602.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	5.97474143644785	5.60300841585387	5.33623263029024	5.72392231520653	5.8071108690269	5.33287220034278	-0.0512554694114684	0.890527124614248	0.974528422443459
Merged-chr11-88045879-2	chr11	88045379	88046379	+	545.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	3.29941679381312	3.53565101863147	3.81100511676496	3.72232509388981	3.93697474686069	3.97387162613613	1.08848210977998	0.0619970491420411	0.323325005641552
Merged-chr11-20806087-2	chr11	20805587	20806587	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	25021.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.26842359173781	3.24633329266436	3.63526098378155	3.39150079485505	3.28527497964902	3.65545365282901	0.222461725786877	0.722329299254793	0.92872455507539
Merged-chr8-13651562-2	chr8	13651062	13652062	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	26025.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.14162018550909	5.17137411772219	5.59857569517027	4.89621030728287	5.16374604223925	5.04353771462427	-0.543759205177123	0.158445396791237	0.530220171976885
Merged-chr1-182512012-4	chr1	182511516	182512516	+	976.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	5594.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.32302823823965	3.18300043171435	3.37022700157246	3.0613841092509	3.01202549169515	3.27824627451928	-0.75468798780801	0.243006640990201	0.640261028736697
Merged-chr1-23383365-4	chr1	23382864	23383864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-189.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	5.60441792246066	5.57334654662057	5.65496840183485	5.64312509828893	5.34350787671302	5.55346846171237	-0.181817420277202	0.579629167987635	0.872572319921262
Merged-chr11-83639853-4	chr11	83639350	83640350	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9528.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	6.97127993780541	6.48810730083121	6.20216410054523	6.14152379042452	5.76570827704749	6.15393695448036	-0.95474487242752	0.00467002546945741	0.0584336059041522
Merged-chr2-158167855-4	chr2	158167364	158168364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21472.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.85209515200485	7.67609413211875	7.55152317208366	7.70814218679187	8.11097004991186	7.70404717614643	0.229942811377077	0.354702059992564	0.741848255752265
Merged-chr19-4287686-2	chr19	4287186	4288186	+	545.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_130863, exon 20 of 22)	exon (NM_130863, exon 20 of 22)	-4549.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	3.04737320597333	3.03358227679209	3.31625022265372	3.2324803439112	3.08532127672753	3.49009174523099	0.586379849254524	0.374899790964288	0.758219381813146
Merged-chr5-97085434-2	chr5	97084934	97085934	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198422, intron 6 of 6)	intron (NM_198422, intron 6 of 6)	26162.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	2.81775361830198	2.94821992142902	2.95120354934417	3.06807879625557	2.7274731997432	2.83977900594635	-0.102019800554375	0.886795156927586	0.973794308941933
Merged-chr13-49200822-4	chr13	49200330	49201330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.75543320771096	8.72252229101022	8.36948644393687	8.50792419505881	8.83193287081314	8.28621371735443	-0.0867436514207161	0.727779203500336	0.930226887829994
Merged-chr11-53773783-2	chr11	53773283	53774283	+	744.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159396, exon 4 of 10)	exon (NM_001159396, exon 4 of 10)	3310.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.82424631026394	4.93002271062762	5.29250511292178	5.43855597428237	5.56822774336557	5.41565503446607	0.941255921673711	0.0102933394428778	0.102499783193271
Merged-chr5-137747172-2	chr5	137746672	137747672	+	959.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029805, exon 2 of 6)	exon (NM_029805, exon 2 of 6)	1203.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	5.56198493185113	5.95277387579188	6.21985759975364	5.8918757131848	6.10730837754782	6.31674424645896	0.314703014524676	0.355418571755183	0.742376471260239
Merged-chr9-15045420-6	chr9	15044868	15045868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019482, exon 1 of 5)	5' UTR (NM_019482, exon 1 of 5)	110.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	6.30999333334377	6.38265626303655	6.03094127757799	5.82619191966945	5.80356609886954	5.92594863421359	-0.709397660059663	0.0170110148747889	0.144936773059741
Merged-chr10-84533511-5	chr10	84532990	84533990	+	803.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175451, exon 1 of 2)	exon (NM_175451, exon 1 of 2)	398.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	4.1427692617851	3.68342183375706	4.03601761020063	4.16304069027724	3.65358790823016	3.69194039806289	-0.329910166347714	0.565984199500807	0.867044945726179
Merged-chr10-58496541-1	chr10	58496041	58497041	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-1396.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	4.09016027828353	4.19416895558087	4.48692957149163	3.93515471379878	4.31969482033813	4.81749361199388	0.375605510076071	0.488707029930801	0.829423271678195
Merged-chr15-58592888-4	chr15	58592401	58593401	+	848.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.43854889462104	3.09788191203921	3.35976515552652	3.28670680822703	3.29678513216186	3.48420134078718	0.193504387409737	0.757641585979801	0.939883186830738
Merged-chr13-42827978-2	chr13	42827467	42828467	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	PB1D7|SINE|Alu	-38280.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	4.91540161092785	4.73105987731497	5.30579398055903	4.93497518211693	4.67589746068855	4.89188546778026	-0.352883005878173	0.397574202203942	0.774485045113678
Merged-chr7-116492449-2	chr7	116491949	116492949	+	639.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11920.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.01598469173637	4.94262430887463	5.40557223628363	5.02987809172244	4.92461058723807	4.93177981228473	-0.34359282813741	0.376400106423446	0.759205392463145
Merged-chr8-105264649-4	chr8	105264149	105265149	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	1.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	5.89640366633905	6.047053037482	6.44701657118254	6.13644356206379	6.42948992750318	6.26794244644502	0.250334306951393	0.423971967585982	0.792333561200576
Merged-chr5-147896698-2	chr5	147896213	147897213	+	686.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1898.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	4.17531681028849	4.02765207889197	4.01403841142178	4.54756469766751	4.5931245230823	4.37621898235521	1.16973904114149	0.0111593884746702	0.108665932849661
Merged-chr13-67378258-1	chr13	67377758	67378758	+	628.0	f1_c57bl6.idr	Intergenic	RLTR13B3|LTR|ERVK	-2495.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	2.7721917358574	3.11562826915822	3.13747519189989	3.36938132885403	3.61023271139675	3.64824338809171	2.26126480500746	0.00180420326270371	0.0285461390156019
Merged-chr4-145216914-2	chr4	145216414	145217414	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-21909.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.57451154697195	4.39242237395748	4.47701481518089	4.50731911564278	4.65201805075202	4.26992522645089	0.0369122629933221	0.933814846256482	0.985607953495783
Merged-chr4-52439029-4	chr4	52438568	52439568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301412)	promoter-TSS (NM_001301412)	-104.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	7.04588835358341	6.92724752908939	6.48685290293835	7.15794322517281	7.10009935269018	6.81055079636301	0.28097650466737	0.323197578317337	0.716590673784795
Merged-chr8-86611002-3	chr8	86610499	86611499	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-13044.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	3.13981125287823	3.13851796514686	3.18566839845096	2.98752927180108	2.94274860668153	3.25667467486217	-0.408311354297671	0.537327158405832	0.8543840664367
Merged-chr14-77806550-3	chr14	77806077	77807077	+	844.650024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-7609.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.0290661791516	3.0546955745833	3.13859587557709	3.67077794169023	3.25927578952214	3.49852515329105	1.70907980854525	0.00886755510501783	0.0926178862976062
Merged-chr19-59346347-2	chr19	59345847	59346847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-567.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	5.22744675062789	4.97105093864682	5.0144769922986	5.02075288531741	4.84338179706302	4.81687394950538	-0.390938572985028	0.305932784171555	0.702020471196356
Merged-chr4-11192330-4	chr4	11191831	11192831	+	821.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282943, intron 1 of 11)	intron (NM_001282943, intron 1 of 11)	622.0	NM_001282943	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	2.70032180470841	2.92853226861321	2.86502247896751	3.14721800495659	2.75501961941015	3.22896028427742	1.03534941904215	0.16277677581188	0.536188662408322
Merged-chr5-22550382-4	chr5	22549887	22550887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	-26.0	NR_102315	320719.0	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	7.15049547577067	7.49053471633508	7.27765306234207	7.27198850173861	7.40295332040475	7.22920265799364	-0.0132492493541034	0.956743959909194	0.989887454023164
Merged-chr2-27547580-2	chr2	27547080	27548080	+	872.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	32433.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.09195895911294	3.05053008655316	3.38409401271722	3.53760222953281	3.62812692296501	3.45594039362021	1.49815226768041	0.0177075678119369	0.149040188397293
Merged-chr9-88731936-4	chr9	88731445	88732445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007536)	promoter-TSS (NM_007536)	-95.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	6.60777269407802	6.37138284610355	6.65832983576795	6.07435973868028	6.40059152118306	6.12256356573533	-0.538598421136493	0.0644298682218867	0.330890042896355
Merged-chr12-32819512-2	chr12	32819012	32820012	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-823.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	7.78427778558802	8.33309136134717	7.6941866465685	7.50525970617184	8.05782564861726	7.42454685325887	-0.387756424902621	0.200576921726881	0.589697000319777
Merged-chr17-46641649-2	chr17	46641149	46642149	+	586.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 3 of 15)	B2_Mm1t|SINE|B2	4431.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	3.51004150488454	3.30374032765034	3.85406254855871	3.62999162498188	3.51643061734278	3.68215576729845	0.145347632578122	0.808121416581249	0.954615579876099
Merged-chr6-149315083-4	chr6	149314574	149315574	+	819.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	5660.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	4.54429560884122	4.55305329539637	4.68159038725873	4.9073454899799	5.06827316228472	4.66644038878699	0.72552221149273	0.0762412202247042	0.363525268033762
Merged-chr7-125707805-4	chr7	125707324	125708324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207239)	promoter-TSS (NM_207239)	-46.0	NM_001081022	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	6.71436650867061	6.91565122458793	6.75176570449813	6.82335791484412	6.75842705888173	6.59611777263621	-0.102160008860831	0.691261693385813	0.918256515929559
Merged-chr10-67030260-2	chr10	67029760	67030760	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	25185.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	3.12844751095922	3.07683473418008	3.3473985789375	2.98961977427755	3.14133199074954	3.36489659708706	-0.0608729946967747	0.926565091195285	0.983551822187064
Merged-chr19-5688938-4	chr19	5688387	5689387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022012)	promoter-TSS (NM_022012)	21.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	7.75046275408652	7.76717242161499	7.79901349210756	7.86826444370267	8.30691400493372	7.65795674042898	0.303959209119232	0.238634628663837	0.635395563974238
Merged-chr13-59856927-4	chr13	59856450	59857450	+	963.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33803.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.54828401241374	5.95375085086455	5.76284086730074	4.84737583871455	4.49736688375576	4.60735858025409	-2.32481166553567	3.49063909879461e-09	3.51633290717315e-07
Merged-chr2-38926367-4	chr2	38925853	38926853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010264, exon 1 of 11)	5' UTR (NM_010264, exon 1 of 11)	108.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	5.92143467250388	5.58955212801015	5.48676507123439	5.72699741639309	5.72538338014633	5.58030951199241	-0.00925580415367842	0.97780558379761	0.994946721895498
Merged-chr3-107680887-3	chr3	107680375	107681375	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	15181.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	4.27055712628888	4.31294982133984	4.10535941800222	4.1168902739075	4.13830072553829	4.22154768930565	-0.229056875167936	0.623309406488936	0.891380356166716
Merged-chr5-34544333-4	chr5	34543839	34544839	+	835.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	974.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.34072753664193	5.41994731166416	5.85665322941288	5.90262691222015	5.57940871074253	5.67145561891977	0.33075294031941	0.345887415043657	0.734330110758365
Merged-chr1-86434554-4	chr1	86434072	86435072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8243.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	7.72668675487347	7.51204048673822	6.93319208476159	7.14294742370388	6.71195271962172	7.19351435415396	-0.615581212546581	0.0459973689074589	0.271097115175793
Merged-chr2-90479942-4	chr2	90479441	90480441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-767.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.99670097576768	6.57957024575248	6.85748874164991	6.78503813742438	6.97010186894806	6.64955110913802	-0.007730759989567	0.977605565948499	0.994887548257726
Merged-chr6-88009401-3	chr6	88008900	88009900	+	908.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10395.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.19924155033397	4.03381145981036	4.16439167378253	3.896697271689	3.89822142241483	4.2749672824595	-0.314843020724026	0.529512925754489	0.850920221109912
Merged-chr6-40573825-4	chr6	40573320	40574320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2432.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	5.34307737243291	4.78260611244652	5.42799954461336	4.51246093051167	4.70880165516415	5.11390178013888	-0.892184176764802	0.0460487277483646	0.271361369581156
Merged-chr6-34945770-3	chr6	34945295	34946295	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001025573, exon 8 of 8)	3' UTR (NM_001025573, exon 8 of 8)	24847.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	3.86583823971121	4.27201750510161	4.25322583305017	4.05934821444619	4.62241023092314	4.56910852112729	0.795062857438763	0.121567573291393	0.466405138252962
Merged-chr15-31466505-4	chr15	31465992	31466992	+	955.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12803.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	5.39984615784524	5.76115139583671	5.47688551684333	5.51537495375256	5.75401023214573	5.65356677893389	0.160697120845277	0.633440582760914	0.896059441151508
Merged-chr10-100589207-4	chr10	100588703	100589703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175128)	promoter-TSS (NM_175128)	56.0	NM_175128	68281.0	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	4.07705766024728	4.23695209695541	4.19779756748303	4.19946174414306	4.13135041240958	3.92101911927708	-0.21482789612172	0.656976595387311	0.904746835520554
Merged-chr7-121047467-2	chr7	121046967	121047967	+	983.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 1 of 4)	B2_Mm2|SINE|B2	13022.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	2.89074353820254	2.78333846128786	2.98338057270632	2.96625803599273	2.73190728939223	2.81424090643852	-0.224672634946247	0.75264592835164	0.938346259574037
Merged-chr17-24887633-4	chr17	24887151	24888151	+	743.0625	f1_balb.idr|f1_c57bl6.idr	intron (NM_027141, intron 1 of 6)	intron (NM_027141, intron 1 of 6)	170.0	NM_027141	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	4.78987891477702	4.51214241175845	4.48902166901307	4.66379030826365	4.81742132981785	4.10762729883678	-0.0747206325270459	0.878843811774513	0.972017703771449
Merged-chr3-106497044-5	chr3	106496575	106497575	+	738.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	11035.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	4.91389250883756	5.18714859094748	5.35831911813646	5.01415251715994	4.86610872275257	5.55326335422924	0.0139694019428234	0.973308646790652	0.994013566033857
Merged-chr14-20731428-4	chr14	20730949	20731949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	3113.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	6.55584115254824	6.4347745250032	6.36995192864577	6.90772301519067	6.90967799080594	6.92436554969595	0.712460491873632	0.0050498848460905	0.0616280620745272
Merged-chr16-89873308-2	chr16	89872808	89873808	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54956.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	2.97568665543905	2.61355834705416	2.9216756000025	2.83428484065122	2.85645087597236	2.93485693934014	0.142544084322198	0.845989093624254	0.963945177091542
Merged-chr14-55787549-2	chr14	55787049	55788049	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164108, intron 3 of 9)	intron (NM_001164108, intron 3 of 9)	1308.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	3.99896156859522	4.00589071808639	3.94637577754515	3.89888585775761	3.94667396597248	4.01531067930182	-0.102803931076526	0.834817384772087	0.96138272464184
Merged-chr17-88511478-4	chr17	88510983	88511983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18641.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	2.46181170404841	2.45723478582086	2.60888614602115	2.53238720137681	2.43972139869288	2.42848653224352	-0.24109239634084	0.760895188599599	1
Merged-chr12-16894766-7	chr12	16894259	16895259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-219.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	8.75422454352825	8.65623237920775	8.48208942831771	8.6303726904947	8.42836043220368	8.39504973198964	-0.207367750920791	0.331577024584898	0.722947909274957
Merged-chr1-172247703-4	chr1	172247195	172248195	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013734, intron 7 of 22)	MER21C|LTR|ERVL	10729.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	3.37682848751828	3.23983505537758	3.05687845281827	3.09665956108296	3.23906879428503	3.46754593951116	0.149078452540915	0.820989801944349	0.957917721861197
Merged-chr17-57334963-4	chr17	57334447	57335447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23739.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.91063287070799	5.69112213821514	5.88965397859472	6.20449631821421	6.34352426044758	5.92674733285917	0.607346460385746	0.0486065759324434	0.279830091064933
Merged-chr1-130457475-2	chr1	130456975	130457975	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010016, intron 4 of 9)	intron (NM_010016, intron 4 of 9)	5269.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	2.85415968285056	2.87252655680645	2.66745842153014	3.20479353258203	2.96499457214049	3.05853030996909	1.33613042371791	0.0695365129560257	0.345041097861828
Merged-chr10-75515358-2	chr10	75514858	75515858	+	912.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	2023.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	5.16730254344828	5.14836336432409	5.23672427567108	5.59162318118441	5.71154773590389	5.0510146673095	0.620739480982147	0.099128167254951	0.419779965440988
Merged-chr6-39207021-4	chr6	39206561	39207561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-288.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	8.00317554983578	7.81988748983541	7.67692750657637	7.76810746262457	7.61411849753236	7.76015004073807	-0.19040506488947	0.403870015996308	0.77907073817134
Merged-chr7-143041290-3	chr7	143040801	143041801	+	908.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11449.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.91395908714392	5.14606171069173	5.14055061754915	5.34943681808988	5.14060602641981	5.17148557327483	0.320171645616332	0.37995728993473	0.762204638031028
Merged-chr10-94038724-1	chr10	94038224	94039224	+	719.5	f0_c57.idr	intron (NM_053072, intron 1 of 20)	RSINE1|SINE|B4	2723.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	4.31332617717009	4.03083535427062	4.0575038742975	5.58674081130794	5.5377857567291	4.94760965243723	2.94705642046975	6.90947317250488e-10	7.7692357261863e-08
Merged-chr15-59706194-2	chr15	59705694	59706694	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57540.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.94390182160488	3.7407741966357	3.60947142753804	3.69352861880858	3.6749895316085	3.68106157408219	-0.317805935565336	0.560752393320052	0.865266809264858
Merged-chr16-30925743-1	chr16	30925243	30926243	+	577.0	f0_balb.idr	Intergenic	Intergenic	155689.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.3162885480782	2.84687131683592	3.19864213910405	3.13177418137407	2.97872102563271	3.27028274949594	-0.0326078838458332	0.962744666496192	0.990971925132654
Merged-chr13-113479441-4	chr13	113478923	113479923	+	935.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	23421.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.96362557046881	3.5779962127953	3.86243287805724	3.64545245837575	3.37714820640094	3.51340311314737	-1.02761740259244	0.0771756256423675	0.366186093985907
Merged-chr2-75938475-4	chr2	75937967	75938967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028235)	promoter-TSS (NM_028235)	-5.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	6.60944545723402	6.83978941554803	6.29209547453558	6.32567401467667	6.4165935177426	6.20214585525443	-0.464617678071932	0.114593053638472	0.45204849035936
Merged-chr18-77704511-4	chr18	77704016	77705016	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178670, intron 1 of 4)	L1MC5|LINE|L1	9494.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	6.17948635528134	6.37341202419701	6.63127098676087	6.07790310630419	5.92587495997436	6.21919410294242	-0.550444793027599	0.0676768800656339	0.340320674019776
Merged-chr7-25716977-2	chr7	25716477	25717477	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 1 of 4)	B3|SINE|B2	2076.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	2.69738784799527	2.73083464927173	2.99636890462749	2.8948205752738	2.98700797556282	2.95193547150065	0.685677915320073	0.337081704855774	0.726998843028656
Merged-chr18-4314109-4	chr18	4313622	4314622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38831.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	8.08595085885533	8.25798687583449	7.91022232613195	7.86897123989224	8.08701528630412	7.53525590583105	-0.336035360460318	0.185902321537223	0.570234334804567
Merged-chr11-118164745-2	chr11	118164245	118165245	+	979.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001112699, exon 13 of 13)	3' UTR (NM_001112699, exon 13 of 13)	-35526.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.96954336749113	4.35827953024148	4.44332098871602	3.95846510611667	3.60216184531428	4.39206149450107	-0.703155095791552	0.220054319850257	0.614480161289355
Merged-chr4-98924782-2	chr4	98924282	98925282	+	796.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356424, intron 1 of 7)	intron (NM_001356424, intron 1 of 7)	972.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	4.88314262329147	4.87847438470055	4.88442044625463	4.97677691389762	5.12550975897022	4.91257526304186	0.293169674262609	0.435940494227584	0.799430009957291
Merged-chr4-47474477-6	chr4	47473969	47474969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019998)	promoter-TSS (NM_019998)	-102.0	NM_019998	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	6.48081861712546	6.22216347377484	6.6484775585381	6.77748026214566	6.51391825563568	6.57614260712335	0.278316637908355	0.325413701496388	0.718147594192999
Merged-chr17-73037110-4	chr17	73036590	73037590	+	846.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70895.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	5.33242420085838	5.43439075331056	5.45295664164051	5.08313115914104	5.3217318409585	5.33834442596569	-0.302266175638077	0.382776796019273	0.764176003339131
Merged-chr2-11706903-3	chr2	11706411	11707411	+	853.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	1199.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	5.16691969202221	5.10880800056531	4.66884803422298	5.13398159926894	4.97510778271923	4.9035213016761	-0.00750940401817301	0.985049057307402	0.996873682039026
Merged-chr6-53068387-6	chr6	53068013	53069013	+	851.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173406, exon 1 of 5)	exon (NM_173406, exon 1 of 5)	111.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.79355063502479	2.80150552600509	2.93376472132551	2.64700869155475	2.61132061434727	2.64425963127872	-1.15110834097794	0.123083042386549	0.469375521223989
Merged-chr13-30696552-3	chr13	30696029	30697029	+	881.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	36470.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	6.35941104220233	6.48234484382289	6.28569728984569	6.1859884270332	6.21557569145814	6.22319215505731	-0.291490431432761	0.287025407101213	0.684323804399215
Merged-chr17-50110742-1	chr17	50110242	50111242	+	596.5	f0_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79755.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.09998912777634	3.21300823295793	3.56130927703924	2.79811957433429	2.98559708124872	3.16655253390701	-1.3686811427004	0.056570149873522	0.306665909806537
Merged-chr16-33921656-4	chr16	33921169	33922169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	45369.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.6650602424883	7.73576732403912	7.41780609870021	7.63520968339741	7.87930988415895	7.1723986481019	-0.0161413352379828	0.953532013820494	0.989446911725587
Merged-chr11-69752892-2	chr11	69752392	69753392	+	685.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B3A|SINE|B2	5741.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	3.27970870337713	3.14094950847146	2.96737903720673	3.52805299826892	3.17550755146812	3.23283898635143	0.740621069097396	0.271156853114383	0.668377504930579
Merged-chr9-32709953-4	chr9	32709453	32710453	+	869.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	13911.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.57453322642115	3.17767274797791	3.26239789797065	3.01379663456662	3.02971335930499	3.59809138386142	-0.440398681824091	0.532616073048782	0.851971173271146
Merged-chr16-30595603-2	chr16	30595103	30596103	+	777.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4120.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.41350685924928	3.18599848685964	3.01070588850466	3.47104052908768	3.45008766041498	3.66281162024709	1.1878443386147	0.0725463857076872	0.353856595460768
Merged-chr7-80905074-4	chr7	80904669	80905669	+	807.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291280)	promoter-TSS (NM_001291280)	-107.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	3.55598377018623	3.34751658841505	3.73536036348425	3.30794044808969	3.63844618787167	4.07121517879433	0.515468907226423	0.4183472876901	0.788588731807313
Merged-chr13-97192859-3	chr13	97192357	97193357	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010422, intron 2 of 13)	intron (NM_010422, intron 2 of 13)	5500.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	4.21210891727299	3.95392236184796	4.0062631380177	3.89967272523951	3.67114624032181	3.76894987056962	-0.883589879453177	0.0899727704757272	0.398724663706024
Merged-chr11-93984808-4	chr11	93984299	93985299	+	930.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-11292.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.82199292087578	3.78606553810426	3.67474486842188	4.52537538607044	4.63237313209346	4.53825573051057	2.30062646017758	5.39232993357589e-06	0.000236025770180422
Merged-chr8-35596678-3	chr8	35596190	35597190	+	693.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-7670.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.92292056106555	5.07144120834332	4.92963177929461	5.08512782948689	5.0798628573048	5.03117119074996	0.18631476615718	0.612329817982212	0.886694626735313
Merged-chr4-10978167-4	chr4	10977665	10978665	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29454.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.66975199697137	4.84095030299775	5.30243780844754	5.45553864533317	5.46179998014386	5.5075594507287	1.07467591061283	0.00553096332923684	0.0658021728194365
Merged-chr5-143055758-4	chr5	143055245	143056245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	57275.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	6.00315461025722	6.06473108388976	6.47584325397927	5.79517662997738	6.25488474287136	6.78689604894283	0.24112110276017	0.51598927195333	0.844019645377198
Merged-chr5-92675385-4	chr5	92674906	92675906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-135.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	4.1720492653317	3.29535239398184	3.76285183028611	3.64889486057041	3.68864722338558	3.7291909505361	-0.35583385481608	0.576028879419389	0.871496930818991
Merged-chr1-184846522-2	chr1	184846022	184847022	+	790.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-675.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	5.94631606993626	5.87388339315956	5.6640271702199	5.60836574594911	5.91933481708817	5.75368476663877	-0.121854576002848	0.702383318003126	0.921908665861083
Merged-chr8-117287551-2	chr8	117287051	117288051	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	30532.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.98520532547676	5.83991348281163	6.08420323149053	5.60919494499662	5.62325355332159	5.64303925101038	-0.617890748094591	0.0447469784384197	0.266713489552298
Merged-chr12-110503019-3	chr12	110502526	110503526	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	17287.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	6.79323761352206	6.44690277027728	6.71966746824492	6.8520050029082	6.89297158851783	6.59624269477561	0.212743349297144	0.434997521403909	0.798753078814766
Merged-chr9-104583431-1	chr9	104582931	104583931	+	548.0	f0_balb.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	13948.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.79991926231217	4.10433992069208	4.68164870401788	3.35019109463378	3.16129553193717	3.52266357778577	-3.22396499522408	3.09593822812015e-06	0.000145787678599559
Merged-chr12-44269142-4	chr12	44268642	44269642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026164)	promoter-TSS (NM_026164)	-12.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	8.72542025926286	8.95178264228797	8.58178591374938	8.73260285145259	8.72599672483977	8.80844446545652	-0.0161075573942366	0.939489397972453	0.986720663284284
Merged-chr2-27262840-2	chr2	27262340	27263340	+	648.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_133905, exon 30 of 30)	non-coding (NR_133905, exon 30 of 30)	-15537.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	2.25030865314309	2.25451732833793	2.46448735770658	2.19417029934542	2.40615005977748	2.34886115519689	-0.0100871050974032	0.990596149658618	1
Merged-chr10-14132444-4	chr10	14131936	14132936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	166057.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.09250762368727	5.89423400314475	5.94390446315993	5.84853983901213	5.96549913850536	5.69746294895935	-0.226984667961765	0.45739559368648	0.812253981549101
Merged-chr19-10025710-4	chr19	10025225	10026225	+	976.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	7531.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.80531196985846	5.80105911673966	6.13942880291637	6.01143045991151	6.09263546046571	6.17918285146184	0.314039117736432	0.299248115194463	0.695992765236497
Merged-chr7-145089412-4	chr7	145088901	145089901	+	904.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	118718.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	3.48921704317823	3.40163671935777	3.36187813174874	3.38302569812394	3.45332118236041	3.31769243719004	-0.118029246120585	0.842226828577353	0.963002495523594
Merged-chr4-129743904-3	chr4	129743449	129744449	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1646.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	5.06637615143805	5.33812884902039	5.69173883025271	5.88884741970422	5.96614994598925	6.17278099817291	1.16457672430797	0.000899528886654019	0.0165960087806447
Merged-chr11-118108286-2	chr11	118107786	118108786	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 17 of 80)	intron (NM_001167746, intron 17 of 80)	20933.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.46455092587279	2.99703283646209	3.22600318171549	3.2932180495372	3.158394922321	3.24023463406111	-0.0635400251430531	0.923400897362379	0.982699256056545
Merged-chr18-23754571-4	chr18	23754086	23755086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 1 of 7)	intron (NM_001162941, intron 1 of 7)	861.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.865038014021	4.49111421918527	4.18838647914191	4.63041310790516	4.41001536685985	4.20823238322648	-0.302387602697084	0.540320329930116	0.85632302227606
Merged-chr11-35091101-3	chr11	35090589	35091589	+	820.6444700000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30367.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	2.17573153731242	2.01007676785019	2.1413774728833	1.87455514306139	1.70790350093899	1.80289943098786	-3.46158003375169	0.00599036704845971	1
Merged-chr17-83267699-4	chr17	83267179	83268179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52396.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.18505960864549	6.18921906059972	6.33669881165004	5.8003252456549	5.96912984749404	5.44407481320936	-0.79742252695345	0.0137168255676959	0.125069220847341
Merged-chr15-8444638-4	chr15	8444128	8445128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027707)	promoter-TSS (NM_027707)	-165.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	7.76862267998808	7.60858388933533	7.69288329189913	7.83405801008456	7.55080187946415	7.82573018699572	0.0679451782620269	0.767163805201895	0.942573703853445
Merged-chr8-69832424-4	chr8	69831860	69832860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024954)	promoter-TSS (NM_001024954)	-264.0	NM_001357308	80720.0	Mm.210823	NM_001024954	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	2.32733665066087	2.48146796502134	2.33790676606258	2.71938185911815	2.79957549550719	2.68263310875702	2.16666002388523	0.0119711262778783	1
Merged-chr17-87282143-4	chr17	87281622	87282622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028639)	promoter-TSS (NM_028639)	692.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	8.49893227063571	8.457981212589	8.18127455087201	8.03473542225919	8.31909020746284	8.34410690234624	-0.212094901344821	0.35168947089036	0.739403630741215
Merged-chr3-144043335-4	chr3	144042850	144043850	+	821.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158982.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	2.64926106470421	2.47491204625712	2.796445569946	2.51047941106178	2.6360783953178	2.75066109510006	-0.0463201560876005	0.952576931882465	1
Merged-chr17-29362503-4	chr17	29361984	29362984	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1570.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.53740559750157	5.68159460774229	5.96768777722045	5.65368824957049	6.06089492292121	5.9839988185413	0.328848271822174	0.323646673099713	0.716890519773217
Merged-chr13-93188362-1	chr13	93187862	93188862	+	563.0	f0_balb.idr	intron (NR_154997, intron 1 of 15)	L1_Rod|LINE|L1	4055.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.14380347044927	6.12386578678269	6.20220099865892	6.51926765065522	6.80517893560636	6.51385919896575	0.7760761166683	0.00494636381074804	0.0607863433836209
Merged-chr6-67266303-1	chr6	67265803	67266803	+	655.0	f0_balb.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-676.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	4.78407735846623	4.87427328979696	4.84908528812775	4.8385445886219	4.53735549476891	5.05172777340369	-0.054030549383142	0.895927410050696	0.97569173539301
Merged-chr7-127290417-4	chr7	127289917	127290917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5843.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	5.90957699145546	5.62156688264121	6.07141409358989	6.02014569292965	6.17518027097242	6.1527679266932	0.432060080082763	0.162825691396682	0.536188662408322
Merged-chr17-51788385-4	chr17	51787803	51788803	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	23751.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	3.98647443928339	3.95658299241762	4.12437941534149	4.13023323485511	3.97980105380597	3.95292668775244	0.0155505302949376	0.974723155394667	0.994343415922287
Merged-chr11-59208304-4	chr11	59207815	59208815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024210)	promoter-TSS (NM_024210)	-46.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	7.8373797310465	7.97873263194806	8.01358582957656	7.7419674302965	7.89836973278506	8.00515056470069	-0.0848820562507556	0.700395905766699	0.920919335036368
Merged-chr14-75006091-4	chr14	75005588	75006588	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-9939.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	3.57704463542868	3.67667290106489	3.40306544361764	3.38237218746797	3.38706720633933	3.29766921258782	-0.766572270308104	0.199194872923647	0.587585329914593
Merged-chr13-101719657-6	chr13	101719150	101720150	+	981.048584	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-27020.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.12655740653073	5.04980113782911	5.18731941078159	5.16379179908636	5.33396738375667	5.15171015078507	0.22336913584326	0.530442115816329	0.851138631874134
Merged-chr15-58989667-3	chr15	58989149	58990149	+	973.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55839.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	7.83594524630582	8.03180866282361	7.54101261709743	7.28857675091072	7.08702012078504	6.87476314257906	-1.06300120788693	5.41524471161722e-05	0.00168824159596945
Merged-chr16-23557424-4	chr16	23556927	23557927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36612.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	4.67202039759083	4.43283581219057	4.85875476328965	4.43488688988893	4.25025728086661	4.67332401132747	-0.505086134019116	0.264317404017785	0.662221571944713
Merged-chr9-107533991-4	chr9	107533473	107534473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019704)	promoter-TSS (NM_019704)	28.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	6.39270556422338	6.55119825154263	6.03771347156979	6.2751779350367	6.38091432735048	6.27709760699577	-0.0710751744628169	0.809763198848846	0.954796906768851
Merged-chr18-4350714-5	chr18	4350114	4351114	+	828.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	2339.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.16769844189166	7.6326408006614	7.12751581528035	7.47762414116021	7.58342846212357	7.15921434707332	0.129543136780042	0.639751784642645	0.898199312621371
Merged-chr12-73593574-4	chr12	73593072	73594072	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	8776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.76542107909753	4.80418043719042	4.73217902061616	4.66131508915032	4.47047645789237	4.72051419592156	-0.371352528818578	0.361158939732161	0.747136220407579
Merged-chr12-84174475-4	chr12	84174086	84175086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	19429.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.31079385785103	8.21517062694083	7.95054859081584	8.04710163634494	8.2374717742591	8.05201713626046	-0.0772329098841677	0.732291695641157	0.931723932448277
Merged-chr9-90264378-2	chr9	90263878	90264878	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	6391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.78632188109726	3.98700373019922	4.3268280065871	4.54407273768792	4.57826517103983	4.67315263971457	1.5032326118984	0.00198968824156376	0.0308668122335965
Merged-chr11-54645285-4	chr11	54644807	54645807	+	789.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 16 of 28)	ORR1D2|LTR|ERVL-MaLR	49161.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.70128112171307	5.06227369686023	4.95374145055051	4.83197602367653	4.92878555053097	5.52144963173683	0.436513718218634	0.309435760996763	0.705003874352637
Merged-chr19-55869658-2	chr19	55869158	55870158	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-25663.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.23981311466491	2.77323256691356	3.25671417136082	3.2924894742776	2.97948296967436	3.21644817707756	0.254535552185674	0.724021206083019	0.929178878081464
Merged-chr11-53926495-4	chr11	53925992	53926992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34789.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	3.38982804152323	3.24946560873669	3.48588730622872	3.07548766612744	2.9685700141368	3.17477799503969	-1.32156191004209	0.0428547608894282	0.259542830197797
Merged-chr2-128709621-4	chr2	128709118	128710118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	10703.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.055881340557	6.72077553428529	7.34903100411968	6.96599625383047	6.99606701350221	6.71201384223763	-0.237979532417716	0.406170797048743	0.78057739983906
Merged-chr17-87301772-4	chr17	87301254	87302254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	L1MB2|LINE|L1	18868.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.21010435470995	6.16919913887171	6.33166062435345	6.28594320623466	6.35595206723939	5.98202908144407	-0.00588168355920889	0.983855289148937	0.996443902142547
Merged-chr5-31291909-2	chr5	31291409	31292409	+	563.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-795.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	6.2198187211092	6.25631705404966	6.08196888331496	6.11832109587045	6.55280824949848	5.72919362315081	0.00903617333513681	0.978916382164097	0.995160277495735
Merged-chr3-132753111-4	chr3	132752597	132753597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	68953.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	4.80889154926196	5.04816043744363	4.35566434557273	4.87612336341084	4.72446960237029	5.00706905522765	0.193481351916841	0.665960002008059	0.907947624137969
Merged-chr15-57037925-3	chr15	57037404	57038404	+	655.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227257.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	4.02300280491952	4.26271273649234	3.97268249229297	3.81114653270245	3.87509379812207	4.08975096119743	-0.519836980772068	0.306706054364533	0.702981130880964
Merged-chr6-136658160-4	chr6	136657687	136658687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	3706.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	7.04892844077987	7.1713139450656	6.80534220596089	7.9118128674063	7.98854274895723	7.58035723350936	1.20015654055416	2.82337858867771e-06	0.000134551939064545
Merged-chr12-80922546-2	chr12	80922046	80923046	+	733.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_033786)	TTS (NR_033786)	1901.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	3.76073811702451	3.79937344333479	4.08032180428421	3.85351217114069	4.05994223378189	4.19130580552149	0.484507973095037	0.349789891967832	0.737833481148361
Merged-chr14-55823574-4	chr14	55823054	55824054	+	871.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1241.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	3.76363305910599	3.47770642642641	3.58400344735681	3.86519253759539	3.16259934408609	3.42884320127879	-0.321589123228366	0.622225376811141	0.891009890820853
Merged-chr8-36746143-2	chr8	36745687	36746687	+	742.799988	f0_balb.idr|f1_balb.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-13133.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.32506583138983	3.38054614259679	3.4729155286506	2.90917621936618	2.92282669665832	3.22068245994987	-1.67167457188348	0.0140319164783673	0.127006168425105
Merged-chr3-109464814-4	chr3	109464314	109465314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-109193.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.44099635277943	5.34651653351469	5.40570742051409	4.93335584346582	5.02038033019083	4.97699904155682	-0.859551286178417	0.0152356871015034	0.134094674459688
Merged-chr3-79178935-4	chr3	79178400	79179400	+	915.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33025.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.11412186428595	7.21391254090668	7.1376118433651	7.72123019203475	7.79367945951321	7.5629135357352	0.799951809541282	0.000469145737816469	0.0100042743598751
Merged-chr13-41525475-4	chr13	41524974	41525974	+	917.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38114.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.31762068446418	4.36568754861795	4.34227875771102	4.33524046278929	4.22399211593986	4.45169258089309	-0.0268917543010314	0.951919432878274	0.989003498288576
Merged-chr5-34573687-4	chr5	34573183	34574183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331081)	promoter-TSS (NM_001331081)	19.0	NM_001331086	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	5.67717973373162	5.70954246226261	5.83822647179845	5.95766844847713	5.49993672975521	6.01320386758505	0.167682575601718	0.616817932253551	0.888530486764078
Merged-chr17-45752866-4	chr17	45752387	45753387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	18381.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.70191014445934	4.47254527531051	4.48876453083276	4.79678153904054	4.06211797641365	4.07291392369595	-0.486923091406888	0.348379991015314	0.736259328771772
Merged-chr16-91374309-3	chr16	91373763	91374763	+	828.3809809999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	1480.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.76769046232677	7.9037001715138	7.68030635095881	7.69464388464525	8.07035844707857	7.75477928557566	0.0957169299287988	0.68687582899403	0.91692170921734
Merged-chr7-16614232-4	chr7	16613749	16614749	+	778.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136929, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	209.0	NR_136929	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	5.85971802231048	5.52005617561481	5.42310809885718	5.59228725094612	5.18402243530519	5.36110966507973	-0.449587208004478	0.212166556193056	0.604576945822415
Merged-chr10-78155546-2	chr10	78155046	78156046	+	618.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	14222.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	3.04107302120276	2.77589460682897	3.13488374108267	3.01811365802636	2.92423025081654	2.9748885489585	-0.0755156600326334	0.913705023453513	0.980796798598326
Merged-chr11-98798078-2	chr11	98797578	98798578	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361934)	promoter-TSS (NM_001361934)	-576.0	NM_001361933	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	3.48116223742129	3.39368243817776	3.76251630233621	3.51503146542682	3.51686139629297	3.83071391094448	0.264591868450251	0.651826580258574	0.902896807825606
Merged-chr6-136520444-2	chr6	136519943	136520943	+	641.375	f0_c57.idr|f1_balb.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	1592.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	5.08252298140744	5.67730180140925	5.18506156294366	5.54031804875332	5.65245917501096	4.94390117614681	0.144745107178249	0.731820027500685	0.931535693390145
Merged-chr11-6393024-1	chr11	6392524	6393524	+	559.0	f0_balb.idr	Intergenic	L1MD1|LINE|L1	-2101.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	3.3276119065312	3.00201426128342	3.2131998226483	2.80892925136561	2.91522403539785	3.17296265273629	-0.987363661870241	0.161499824687142	0.534459252156486
Merged-chr2-18924249-2	chr2	18923749	18924749	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	MLT1A|LTR|ERVL-MaLR	73872.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.30629529161123	3.1942422927504	3.09742639275207	3.323234071427	3.05174791982351	3.34496151506569	0.146622549525317	0.820857716147686	0.957870709971344
Merged-chr11-73019529-4	chr11	73019030	73020030	+	941.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152202)	promoter-TSS (NR_152202)	522.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	4.71175905327717	5.10154530803653	4.94268708744043	4.85950648136071	4.6826697631737	4.86250787448009	-0.295088372313357	0.462771292874626	0.815435922849644
Merged-chr16-84968219-2	chr16	84967719	84968719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-3992.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	4.63898395269913	4.76995556280882	4.81877245175011	4.7433404163272	4.53062011037443	4.43499990873817	-0.384020630218057	0.357887134589544	0.744420985799234
Merged-chr1-36082425-4	chr1	36081927	36082927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14027.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.70596543247224	7.41264545565398	7.37237518693869	7.45602358306628	7.74303423720899	7.20338636237495	-0.0181836977997191	0.945389242166585	0.987907378883357
Merged-chr2-148889154-4	chr2	148888656	148889656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13644.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	2.70854466581909	2.73255217592268	2.8707419904449	2.82966363580108	2.80990465338381	2.82266408874603	0.269700953457175	0.704691753510302	0.922514359670029
Merged-chr10-7063174-4	chr10	7062659	7063659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39974.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	6.15730246843834	6.00972827017229	5.78030539254346	5.49448996814836	5.29965953300845	5.84217161020547	-0.815147325912387	0.0171567505123625	0.145760557140357
Merged-chr11-69057800-2	chr11	69057300	69058300	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1975.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	4.42557609204678	4.55925042825351	4.80825876404469	4.25292632608129	4.37812500628648	4.73176649649192	-0.343314569393741	0.452367502428207	0.809370729412253
Merged-chr1-88231546-2	chr1	88231046	88232046	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	L2c|LINE|L2	4526.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.61160828162607	3.54544603569517	3.71411044774363	3.56110849037203	3.36513298738468	4.09973272375162	0.276170458446902	0.652697416585681	0.903005353518697
Merged-chr2-25575552-3	chr2	25575063	25576063	+	757.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	-692.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	5.65524413726501	5.87941527097287	5.74635426257282	5.56132433752082	5.34572421440946	4.79494557581569	-0.905737396379054	0.0212308233531387	0.167941282400225
Merged-chr3-107098236-4	chr3	107097724	107098724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3343.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	7.09829627483691	7.10155457525892	6.66194691053337	7.47633920495283	7.78145423704158	7.22538276269832	0.808014920598356	0.00428383501671349	0.0547793674613026
Merged-chr14-61770519-1	chr14	61770019	61771019	+	575.666687	f0_balb.idr	Intergenic	Intergenic	-88146.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	2.74576229903162	2.66636084821343	2.65089798819546	2.38049820715765	2.45226898287332	2.32791712861265	-1.87163400687661	0.0299158236698715	1
Merged-chr14-55604430-1	chr14	55603930	55604930	+	1000.0	f0_balb.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	-149.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	7.9348937185933	8.00393641681467	7.56980795125486	8.02498193699493	8.30374642465492	7.64660568103381	0.245377355314042	0.367306926097744	0.752213385063617
Merged-chr8-36867775-4	chr8	36867242	36868242	+	675.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84700.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.90074486990627	5.06649363738352	4.8528959647826	5.45251326839728	5.65483740628061	5.49601480894515	1.19241140987056	0.000860160091427539	0.0160188453194948
Merged-chr11-59169998-3	chr11	59169507	59170507	+	940.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6262.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	3.4815037359543	2.90874018908258	3.42842649096211	2.91049734159655	2.69124407524409	3.05741256186417	-1.88019816971198	0.0146642174479993	0.130542442004186
Merged-chr12-100085241-2	chr12	100084741	100085741	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-27090.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.91433940186828	6.64101795478776	6.29105097463401	7.03371644255696	7.18700283959196	6.43721245109367	0.442754985237554	0.179726411392402	0.561276907469273
Merged-chr11-61729394-2	chr11	61728894	61729894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164242)	TTS (NM_001164242)	-8595.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	5.30046430285406	5.49446311550392	5.62544051090492	5.81167273669136	6.11196981241287	5.96076440551767	0.912466322641561	0.00478377258609862	0.0593393186261321
Merged-chr10-80576158-2	chr10	80575658	80576658	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	1138.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	3.07466523279853	2.74705350026245	2.88663080836463	2.70786819071343	2.69619407965684	2.77473942778277	-0.963041321629233	0.192056987239998	0.579000455655954
Merged-chr13-99230706-3	chr13	99230193	99231193	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 2 of 4)	intron (NM_001004149, intron 2 of 4)	45870.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.17775275484241	3.78240292675098	4.00110274455019	4.1461897661963	4.14558119478246	4.02113676322228	0.322442835023947	0.522966782108653	0.847898910888268
Merged-chr3-19309898-2	chr3	19309398	19310398	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1424.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.88194609253941	4.05477612633514	4.07388262749203	4.03130723018962	4.04479529388647	3.99874572369467	0.0686417170268574	0.888597431904625	0.974077866731537
Merged-chr12-108613306-4	chr12	108612815	108613815	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	7549.0	NM_001163395	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	2.62142669085871	2.70137304615841	2.68618726557663	3.17820881450598	2.99671102046643	3.13316735509126	2.27686894121121	0.00269294427462064	0.0388081781676027
Merged-chr1-154112653-1	chr1	154112153	154113153	+	797.333313	f0_balb.idr	Intergenic	MIR|SINE|MIR	-88534.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.35872341155965	4.14395086518321	4.11269186045313	3.49083910200275	3.87134763472994	4.04054832366298	-1.17964983199901	0.0332691163471637	0.222580335719478
Merged-chr3-126673257-3	chr3	126672759	126673759	+	740.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	MTA_Mm|LTR|ERVL-MaLR	76308.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.66595190382395	3.60361404464349	3.4588003162657	3.99435825946297	4.15327661379089	4.28815108127518	1.78833940827651	0.0011978985711592	0.0207267091513859
Merged-chr2-38997494-2	chr2	38996994	38997994	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-815.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	4.15623163699171	4.11093858043415	4.16135284826866	3.92838008190155	4.0604921416667	3.65887446560302	-0.697697893352353	0.182649758608699	0.565440922476101
Merged-chr13-60708355-3	chr13	60707851	60708851	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	RMER15|LTR|ERVL	78013.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.20160357938716	4.16695162411007	3.98524321808038	3.73336503202335	3.53930626682253	4.10128885245341	-0.999344823999638	0.0687137447339434	0.342942254787785
Merged-chr11-86356342-4	chr11	86355835	86356835	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	1190.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	7.06047611134846	7.16272855207183	6.85634888076882	7.1671720768997	7.4318552225406	6.77107526930237	0.190467329603762	0.503427905372019	0.837031254874512
Merged-chr4-120405604-4	chr4	120405146	120406146	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013883, intron 1 of 16)	CpG	365.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	7.02570597422839	6.80248289627519	6.96620987810351	7.20757219875065	6.98654444520701	6.92613158736536	0.17529872289158	0.487577292406705	0.828533944913187
Merged-chr12-100776201-4	chr12	100775689	100776689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2868.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	6.08660253886068	6.12289378631449	6.30855773754067	5.68041123546931	6.01998699218911	6.04547050130691	-0.420692836024297	0.168959717622364	0.545570265975462
Merged-chr17-74526303-2	chr17	74525803	74526803	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1992.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	3.63318397749198	3.67818855545225	3.93104548641219	3.79008813655193	3.61978045405108	4.21459651718073	0.448137300942689	0.43083738428422	0.796606987332891
Merged-chr3-88553660-4	chr3	88553146	88554146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-70.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	7.27697584442691	7.25472557333481	7.20461871812397	7.20727273447806	7.21210822096393	7.40686432874706	0.0381742326804631	0.869824311422122	0.969901645415424
Merged-chr11-98682409-4	chr11	98681894	98682894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009439)	promoter-TSS (NM_009439)	-160.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	7.18495708598169	7.18347415610253	7.35828846156064	7.3073978329624	7.18082190159085	7.49655277652516	0.130160776230879	0.590273255052373	0.877135729499364
Merged-chr1-101902288-4	chr1	101901796	101902796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	746528.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	4.54711358624422	4.66602822917877	4.99946991698896	4.38511302297144	4.54643273132357	4.64160112619103	-0.514467214542115	0.237058003385914	0.633453943470732
Merged-chr1-191119519-4	chr1	191118996	191119996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	21082.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.80699846442552	7.49076401076947	7.38835560807699	7.00455027503879	7.20090619821183	6.79745538328664	-0.827322418906793	0.00187242782365445	0.0293576360185867
Merged-chr2-118545425-4	chr2	118544987	118545987	+	791.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138603)	promoter-TSS (NR_138603)	-900.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.3926245790314	4.26541811388585	4.19134606110085	4.39997084614664	4.3385170488996	4.78827583988227	0.571583218932837	0.218163566466493	0.612406519079143
Merged-chr14-62347358-4	chr14	62346860	62347860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 2 of 10)	intron (NM_026001, intron 2 of 10)	15292.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	6.32351015129555	6.23769898663636	6.44567414625465	6.38492804187443	6.5669047870407	5.97520276368818	0.0236820819603872	0.938175724799563	0.986279451858875
Merged-chr11-21024700-4	chr11	21024199	21025199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66625.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.51478296305375	5.3631433019344	5.30555871844547	5.30307669493505	5.60070383543573	5.57619124716802	0.192022365468662	0.574313014985873	0.870582911329883
Merged-chr16-15636694-1	chr16	15636194	15637194	+	857.0	f0_c57.idr	exon (NM_008565, exon 2 of 16)	exon (NM_008565, exon 2 of 16)	706.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	5.47925657387639	5.16002950194364	5.03668186447514	5.57031299132446	5.52172674889577	5.28138300443502	0.432865099320157	0.236042224386013	0.632359727255743
Merged-chr3-145105645-4	chr3	145105153	145106153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6547.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	4.94532750922682	4.64312675228311	4.31388881771936	4.4068283525635	4.16649284868571	4.56202858715123	-0.716093833338969	0.13178000408328	0.48542121200015
Merged-chr9-70835649-2	chr9	70835149	70836149	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99159.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.4477004719447	6.4698079322262	6.94395632593658	6.58230990716288	6.42481871851004	6.43521911273466	-0.235546036272383	0.418027849217263	0.788473936634102
Merged-chr8-113656336-4	chr8	113655856	113656856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001048145)	TTS (NM_001048145)	13143.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	6.25223273325866	6.07951848160908	6.13138570127277	6.04331042103059	6.24546471521747	6.57802040191042	0.237114906501117	0.434327368958655	0.798345668381899
Merged-chr1-72712640-3	chr1	72712156	72713156	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009084, intron 3 of 3)	intron (NM_009084, intron 3 of 3)	1396.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	4.87051432043787	4.72184323637927	4.93989296638446	4.83205610576829	4.66661833414362	5.10161287254175	0.0542566920787301	0.893480133918181	0.975237866709772
Merged-chr4-111720517-4	chr4	111720003	111721003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	493.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	7.35684595900518	7.24717931227836	7.62873725594728	7.4502011250589	7.75905683201234	7.81996873281657	0.396175851374358	0.114475567093779	0.451949278171341
Merged-chr8-39309415-3	chr8	39308963	39309963	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	11483.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.3898570488466	3.57131338840744	3.17144843636977	2.76393355419055	2.77630294447902	2.86328908943074	-3.0911820432862	0.000119922889351548	0.00330853573513383
Merged-chr2-127252971-3	chr2	127252471	127253471	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175145, intron 2 of 3)	MIRc|SINE|MIR	4996.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	3.66372518170931	3.18705470320832	3.24167735054126	3.28410634899954	3.24907493653228	3.31473682453406	-0.416617411700882	0.518066460244517	0.845008703964122
Merged-chr2-166660221-2	chr2	166659721	166660721	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	53611.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	2.85828306094426	2.75148590442499	2.7037428964907	2.75995130228898	2.82889281782211	3.01901642291898	0.474795921213346	0.511591300142053	0.841459220847773
Merged-chr15-59439095-2	chr15	59438595	59439595	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	MTC|LTR|ERVL-MaLR	64897.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	6.03306461589381	6.13528679338767	5.84891862355426	5.63134249895286	5.72362925589607	5.45800506546741	-0.713771232366737	0.0242721161152523	0.183424326177483
Merged-chr5-45448826-3	chr5	45448347	45449347	+	662.211121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024236, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1382.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	3.17351929148265	3.11955609219895	3.27516588401992	3.19535224967417	3.10405083563891	3.05677689242546	-0.285475887913747	0.656042270537866	0.904520810952906
Merged-chr17-36266066-4	chr17	36265553	36266553	+	918.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357889, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	5378.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	3.7810587457991	4.1360605025734	3.81704399075912	3.7879419686794	3.70057189806399	3.93706341938568	-0.384207425331544	0.473282764941455	0.820846096074049
Merged-chr6-118128200-4	chr6	118127707	118128707	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	10623.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	5.16011415454365	5.41454135950208	5.12525829798709	4.98041424881822	5.220013786776	5.15575359960287	-0.248221170067081	0.498968278992265	0.834166852012946
Merged-chr15-73726172-4	chr15	73725613	73726613	+	980.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1183.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	6.31446332063224	6.17475017867955	6.41027790530605	6.76382606953032	6.50955145071453	6.27311792105856	0.390781689540487	0.177398024497309	0.558301555367907
Merged-chr4-116995348-4	chr4	116994857	116995857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	9.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	5.57464751290005	5.66311374318717	5.81984325267682	5.88340061728288	5.77221304189996	5.75592678323947	0.225166091146298	0.468832337906535	0.818724839920395
Merged-chr19-44248304-4	chr19	44247802	44248802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	45014.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	6.5852300829641	5.81550966184026	5.88049288789945	5.96801455455783	5.70962501325428	5.26188975461295	-0.85396903994091	0.0372018569210454	0.238004929316188
Merged-chr2-130729483-4	chr2	130728967	130729967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31948.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	6.48677898162351	6.22754014178946	6.16786068793208	5.52843212101879	5.49799533846537	5.42740406928617	-1.45054840962239	3.15215710688345e-06	0.000147849317107981
Merged-chr13-41016281-4	chr13	41015763	41016763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	13.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	7.66843273934343	8.07371624667585	7.67727187416582	7.7988846622325	7.90260557492341	7.52835467277708	-0.0956601114128771	0.705389567355054	0.922756484933722
Merged-chr7-28741874-4	chr7	28741444	28742444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	-24.0	NM_023637	71984.0	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	7.364630007622	7.56743606947541	7.27909734554722	7.50908487490893	7.64485865875934	7.2648435814672	0.112106996976604	0.65064068117811	0.90265185343381
Merged-chr12-118282239-2	chr12	118281739	118282739	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166385, intron 3 of 5)	MER74A|LTR|ERVL	19201.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	3.16276174065052	3.05205674629433	3.12234132629387	3.02777218678013	2.99055657418214	3.25003400986463	-0.1111833672191	0.86546673889134	0.968641478520565
Merged-chr8-117052615-2	chr8	117052115	117053115	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	29834.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	3.47713142344861	3.03885955423442	3.32112051913382	3.06132631502637	2.95357470095709	3.39206476306745	-0.61809382117156	0.37070293531815	0.754979680878026
Merged-chr4-135244519-2	chr4	135244019	135245019	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	28241.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	2.51433450056567	2.54504870598825	2.70649725282825	2.67039051915117	2.43831552141961	2.71911751687758	0.128836223694963	0.868956654776124	1
Merged-chr3-144687073-2	chr3	144686573	144687573	+	649.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	33262.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	3.43116338784484	3.5061736516939	3.29884404337523	2.89266696960294	2.87789155974855	3.07611877396888	-2.22133446459023	0.0015354724548631	0.0251404155891871
Merged-chr5-28036992-1	chr5	28036492	28037492	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-34420.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	7.17684956252215	7.51605533245301	7.19355529869439	7.03919993949029	7.37684687437892	7.07254558514219	-0.194098875125564	0.458157859129513	0.812896892900026
Merged-chr9-107629274-4	chr9	107628781	107629781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	6061.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	6.47949780671263	6.13953655887599	6.41607083170617	6.17582790136831	6.2568711404341	6.54433703884638	-0.0384317004132421	0.896248068817411	0.975793383188212
Merged-chr18-39319878-4	chr18	39319370	39320370	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167375.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.89165714165733	2.74391144534414	3.01278209774673	3.02377356784524	3.1562243119238	3.41258624852573	1.48113259864188	0.0358309147400134	0.232574870689347
Merged-chr13-95948716-1	chr13	95948216	95949216	+	844.0	f1_balb.idr	Intergenic	Intergenic	-56794.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.4296194159762	2.98541862738258	3.2135694828127	3.20126949862744	3.17056735802045	3.28557329524585	-0.0275005379337362	0.966710276475746	0.992349609766636
Merged-chr16-20517596-2	chr16	20517096	20518096	+	645.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007889, intron 1 of 14)	intron (NM_007889, intron 1 of 14)	610.0	NM_007889	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	5.31019475408374	5.24930177110517	5.29638997079623	5.20692220168117	5.1245534432345	5.32892173929567	-0.141888798493991	0.682750440898338	0.915212496624716
Merged-chr2-74578272-3	chr2	74577817	74578817	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110209, intron 1 of 13)	intron (NM_001110209, intron 1 of 13)	631.0	NM_001110209	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	3.93344853694276	4.04041343687816	4.00758362083212	4.09045429156683	4.08683285886713	4.17018987189654	0.348075247312883	0.46909064841314	0.818883765302854
Merged-chr13-41359561-4	chr13	41359064	41360064	+	903.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-563.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.35029825563928	5.61822265174782	5.72273707945337	5.70177140825868	5.53561621973121	5.35870987807031	-0.0399749329928318	0.907225030912122	0.978868492078838
Merged-chr11-118153169-4	chr11	118152688	118153688	+	994.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-23969.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.53831894872979	6.46397220640146	6.25918448618554	4.94403482184227	4.72637748105044	5.05579472678081	-2.93571918184321	1.27447599762592e-17	5.85892811107502e-15
Merged-chr15-98678535-2	chr15	98678035	98679035	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTA)n|Simple_repeat|Simple_repeat	-1074.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	4.07200249985753	4.11429072482828	4.25814996523896	4.49215438812142	4.33424289217422	4.41318552007185	0.724613250115417	0.111001903267382	0.445034517060439
Merged-chr4-126534053-2	chr4	126533553	126534553	+	599.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	-595.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	3.05376771726963	3.14881426788441	3.16820460136619	3.34765392538706	3.10649828162692	3.12206804393672	0.315746918334822	0.624279050904791	0.891935778467452
Merged-chr1-136569404-4	chr1	136568915	136569915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55486.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	7.73805780160354	7.66310387861968	7.52212502438475	7.95793234717016	8.34233613551978	7.96020434864391	0.654605489275531	0.00615226376451067	0.0710404611875387
Merged-chr6-32997028-1	chr6	32996528	32997528	+	570.0	f0_balb.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63232.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	4.68153524228767	4.5516061671368	4.71417973351454	4.33663382595387	4.63144150177041	4.7037702005411	-0.198201538415227	0.642535627803779	0.899438418121699
Merged-chr13-52156040-4	chr13	52155552	52156552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59311.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.92543549414675	6.90954390274484	6.52108442440123	6.56613367540962	6.89031223790671	6.7984042251486	-0.0734433618078022	0.791097746856579	0.949694766870106
Merged-chr10-98897277-2	chr10	98896777	98897777	+	890.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17365.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.61429869743564	7.39692871592912	6.99124413890453	7.24010046582343	7.40531045252512	7.51212190040071	0.0276646326074887	0.918450695550156	0.981774101853545
Merged-chr4-86652113-2	chr4	86651606	86652606	+	612.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	17953.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	2.62602628186143	2.87510087105635	2.93078149972179	2.78310803822643	2.48297337495758	3.05934648242002	-0.105198258397124	0.895829517150037	0.975665889379756
Merged-chr14-54742590-3	chr14	54742080	54743080	+	968.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-30406.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	5.19933748310799	5.44854571027465	5.15572970522043	4.68749048414807	4.51621634544852	4.98204201301774	-1.20455816685013	0.00256898687809539	0.0374623659573364
Merged-chr11-97661629-6	chr11	97661153	97662153	+	940.255554	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1759.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	6.87742305950268	6.75435746220199	6.71522037705654	7.11806223473848	7.05306443984244	6.94071858460672	0.391872606901617	0.111562614378408	0.446186109935044
Merged-chr11-32560222-4	chr11	32559734	32560734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	26968.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.36671916262276	7.38098512138235	7.23775392354459	7.27761848216317	7.59574042511748	7.06579082413854	0.0169186150042714	0.947983878237668	0.988024000499268
Merged-chr11-107478717-3	chr11	107478214	107479214	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-814.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	5.94872561014774	5.57335822895849	5.7940323637799	5.92769180757329	5.96798819005393	5.85581435637338	0.250786177402473	0.423871647159046	0.792272050905538
Merged-chr12-85701037-4	chr12	85700501	85701501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	14281.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.39899386725878	6.48933683863774	6.19928979090842	6.38293522194414	6.44564420736437	6.34240278655174	0.0280609287975085	0.918637766965013	0.981830247255695
Merged-chr7-83653958-6	chr7	83653441	83654441	+	985.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	1554.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.85952017969074	6.80800820419404	6.72802901225618	6.55956414254286	6.52565730267029	6.48137052667187	-0.44227974627869	0.0809905472008899	0.37660097113566
Merged-chr7-25220673-4	chr7	25220183	25221183	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-742.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	7.9092996041247	8.19393112990262	7.63490817189308	8.3783914965977	8.63566599016074	7.74022875170773	0.525902119568054	0.0823271297923737	0.379332363801987
Merged-chr12-20231592-2	chr12	20231092	20232092	+	855.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	584187.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	3.12826403097426	3.16050479275763	3.29286479454297	3.08383735846465	3.06858314635644	3.30922701118804	-0.170513938722537	0.790503716283892	0.949510125158813
Merged-chr7-107275045-3	chr7	107274558	107275558	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID2|SINE|ID	65613.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	2.64968376911813	2.71713676723405	2.70354989358642	2.47839905947361	2.37588400416776	2.65401464769828	-1.12931862047726	0.157532046299795	1
Merged-chr11-74837798-4	chr11	74837216	74838216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010813, exon 4 of 6)	exon (NM_010813, exon 4 of 6)	6792.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.544301532076	8.26130249183009	8.12087985315602	8.3372588358702	8.48123407655262	7.96549716137822	-0.0543379278310156	0.82891901752841	0.959925957873127
Merged-chr19-42144281-3	chr19	42143773	42144773	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3116.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	3.89814130390794	3.3775026722832	3.55726039490583	3.18709069190301	3.05335820905751	3.57575217888202	-1.31983259174694	0.0506389989710245	0.286656903624805
Merged-chr2-167932289-4	chr2	167931809	167932809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-18.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	8.36758402399583	8.12986268835882	8.06492662310453	8.114539164692	8.1462537454113	8.06320458094596	-0.123932315582027	0.568234369679203	0.868531823304055
Merged-chr16-16573365-4	chr16	16572865	16573865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-13146.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	6.88778912391129	7.05694221891295	6.89283205970321	6.90872643308636	7.04471363688874	7.05999123869595	0.0827096921709216	0.735499482758031	0.932744628746236
Merged-chr13-40900176-4	chr13	40899678	40900678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008105, intron 1 of 2)	intron (NM_008105, intron 1 of 2)	13420.0	NM_008105	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	3.46257367658288	3.57082712860362	3.3328855178432	3.43115331757181	3.16052355357641	3.22726205912819	-0.74521869484407	0.231351717117334	0.627189055416517
Merged-chr8-71988716-3	chr8	71988248	71989248	+	726.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 12 of 12)	intron (NM_024444, intron 12 of 12)	20878.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	3.0602961361358	2.98236480943271	3.38141980757084	3.49987354151764	3.14749035106645	3.23001973899461	0.642517643778669	0.33659273167122	0.726578163839891
Merged-chr1-171501634-3	chr1	171501143	171502143	+	865.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1835.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	2.73846740400363	2.8213293373467	2.78097960015191	2.77131215516624	2.86381940467907	3.03144348701249	0.543272578000434	0.445997074834444	0.805513451373278
Merged-chr8-125337033-3	chr8	125336532	125337532	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	155801.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.05162401635547	2.02862893624568	2.07669047659475	2.40416058414604	2.15776127667726	2.35566182188648	1.94377724112181	0.0376877556654806	1
Merged-chr11-70983005-4	chr11	70982501	70983501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007573)	promoter-TSS (NM_007573)	25.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	6.74402857775974	6.76049690479789	6.49030596532708	6.49326222562856	6.29826930463135	6.2987529988289	-0.504430146994724	0.0635866682015955	0.328628539609836
Merged-chr11-69581532-4	chr11	69581050	69582050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	CpG	1191.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	7.74540852871759	8.18757564632845	7.76940167557136	7.84906795438664	8.27626039653179	7.71782276863518	0.0807917790464721	0.766112943337946	0.942366894267556
Merged-chr7-80788541-4	chr7	80788043	80789043	+	844.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14788.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.85341388086017	5.3314941664782	5.77319324987601	5.5740930125815	5.71885150373918	5.35219863610464	-0.189195962022789	0.598438408363736	0.880794974407078
Merged-chr7-35064486-4	chr7	35063993	35064993	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7927.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.3733047955681	7.29931407216719	7.39474074416709	7.31939279433137	7.24224801299115	7.17831263592356	-0.1554499530898	0.496812057876997	0.833336003728501
Merged-chr14-70058089-2	chr14	70057589	70058589	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19356.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	6.72381417173597	6.54072579283774	6.05272355582476	6.78956187164732	7.02093318374728	6.71742023432543	0.584042213598093	0.0563770262097848	0.306062477775414
Merged-chr11-78535512-4	chr11	78535022	78536022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018854)	promoter-TSS (NM_018854)	738.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	7.90982836820149	8.00150962024168	8.00353272477293	7.83193986039201	8.4302105108059	7.93028442780407	0.183194238442449	0.472759663213118	0.820550293768681
Merged-chr19-7218147-4	chr19	7217658	7218658	+	992.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-542.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	6.62256735881189	6.45182859977987	6.53040993026507	6.57405343264311	7.00004738342242	6.4992538905569	0.297359033285122	0.300162784751979	0.696931802149807
Merged-chr9-22389288-4	chr9	22388802	22389802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	-96.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	6.84148984431699	7.12356281674362	7.05690510850047	7.12615903615686	7.13529100817582	6.83217067691211	0.0526043298300672	0.837968342180323	0.962298455078579
Merged-chr2-132607882-4	chr2	132607373	132608373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	9677.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	4.74194948231142	4.29519845923247	4.36741194139854	4.23260774041763	4.3750750884005	4.25083484255129	-0.50750312606525	0.277878244647437	0.675145063235434
Merged-chr4-62283086-4	chr4	62282581	62283581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3348.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	6.9993497114591	7.04099472636633	6.92676142875627	7.39190536553129	7.55317315531197	7.4361517730133	0.704309242176181	0.00250518386165538	0.0368093481830516
Merged-chr10-51482334-2	chr10	51481834	51482834	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 4 of 8)	MTD|LTR|ERVL-MaLR	1722.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.67402268555885	7.06335099435493	6.80935595345786	5.9794762148401	6.09523417958694	6.16069385125183	-1.27269851473205	6.55840497624111e-06	0.000279136450773949
Merged-chr14-49171501-2	chr14	49171001	49172001	+	723.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-745.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	3.81713794489589	3.88793026492075	3.80431897519565	4.17191731349754	3.98140767110007	3.82189689662081	0.504815339177475	0.32680165563592	0.71916934654343
Merged-chr15-94539537-3	chr15	94539057	94540057	+	778.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172437, intron 2 of 8)	intron (NM_172437, intron 2 of 8)	3950.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	4.88166242220377	4.4709397596045	4.71490217508683	4.80867162817884	4.62755707976814	4.8558547480203	0.141658432853813	0.736081610444452	0.933046642264646
Merged-chr4-147942448-2	chr4	147941948	147942948	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029841, intron 1 of 2)	intron (NM_029841, intron 1 of 2)	1553.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	2.31187977559458	2.68819022775754	2.56816383497795	3.00247585657079	2.5750080008191	2.83614600665452	1.53751529325092	0.0789026032970918	0.371090199815986
Merged-chr11-70563880-3	chr11	70563368	70564368	+	983.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	987.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	4.88935987947631	4.58254551271553	5.08708078245958	4.91389050001708	4.69510274095995	4.80462741145793	-0.122388088451963	0.768017619798127	0.942763297310062
Merged-chr8-94012721-4	chr8	94012227	94013227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011787)	promoter-TSS (NM_011787)	-87.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	7.08530300390181	7.13551483779301	7.21287302013278	7.02171951842594	6.77719710416849	7.10260224099051	-0.269132501938637	0.279748317439724	0.677394232096281
Merged-chr5-21374027-2	chr5	21373527	21374527	+	754.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008013, intron 1 of 1)	intron (NM_008013, intron 1 of 1)	1354.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.26421375275758	4.21130925534893	4.24608018988001	5.46547601108354	5.48638359545479	4.79382127177311	2.45491965333725	4.72975777251178e-08	3.69187321515159e-06
Merged-chr5-105717175-2	chr5	105716675	105717675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	PB1D10|SINE|Alu	16365.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.69540747876315	3.53145251527662	3.73230746645981	3.44284892812166	3.17947264335459	3.31728272686394	-1.29223470154911	0.0329341908417828	0.221123872473418
Merged-chr11-69579377-4	chr11	69578879	69579879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144824)	promoter-TSS (NM_144824)	-55.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	6.00860462512636	5.83347629698642	6.00344347621896	6.3013853067344	6.39959288590084	5.96933760716895	0.512866674390383	0.0896286372262464	0.397792812370467
Merged-chr11-106659967-2	chr11	106659467	106660467	+	676.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47037.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.85916193439906	6.8341197017105	7.19234613281586	6.88988399356392	7.10731591242051	7.10710268271938	0.115814733684208	0.655619462674713	0.90429384180742
Merged-chr1-165617903-2	chr1	165617403	165618403	+	907.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16638.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.35361752160128	7.0046694644324	7.1997479920487	6.9634057621317	7.10184540020286	6.87178472937542	-0.309409312114211	0.224269361111978	0.6190426237005
Merged-chr6-115066097-2	chr6	115065597	115066597	+	906.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28223.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	2.40041335228819	2.43728653724959	2.85150541271265	2.45224139687464	2.45147389835934	2.44189174231888	-0.732435946097033	0.378257821364744	1
Merged-chr4-150030789-4	chr4	150030204	150031204	+	964.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21681.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	5.22344628148621	5.43864339164908	4.81710755886054	5.52308782969862	5.50247319371864	4.97059900986081	0.3342224116047	0.42072816440378	0.789872726330852
Merged-chr3-69696332-2	chr3	69695832	69696832	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-25723.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.37064313372818	3.49965879452042	3.49945557417839	3.7577813041868	3.69230140451234	4.14695278461633	1.42217096290167	0.014202986369181	0.128060334361397
Merged-chr1-60974958-4	chr1	60974462	60975462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	6.27435137146972	6.5228694458996	6.76677305945974	6.56142922955032	6.80255545766757	6.72006101552403	0.275757249549288	0.329851435314801	0.721504110160967
Merged-chr7-46547768-3	chr7	46547257	46548257	+	855.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	Tigger14a|DNA|TcMar-Tigger	92050.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	3.86824510359181	3.54302369737732	3.94478146044877	3.75930606982521	3.4703534580462	4.01264005496982	-0.111470546201304	0.848559023969936	0.964356989789491
Merged-chr5-64377181-2	chr5	64376681	64377681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90761.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.59783868045225	6.37574025194047	6.42014220174167	6.85736981818235	6.84953123983639	6.85971529278968	0.607053466359341	0.018430745192603	0.153067715938328
Merged-chr3-59343773-2	chr3	59343273	59344273	+	576.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001162884, exon 1 of 7)	5' UTR (NM_001162884, exon 1 of 7)	483.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	3.1944085849527	3.46381470475679	3.24420688806372	3.3314062427856	2.91344544008447	2.94365186189992	-0.975190296070844	0.164852579885595	0.539552903556645
Merged-chr5-65137945-4	chr5	65137438	65138438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	6707.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	5.10174300792165	4.79854860590388	4.93852699573881	5.33114475160908	4.9888579562056	4.68018251248745	0.17558204600295	0.673436538902731	0.911417287047018
Merged-chr5-36830125-4	chr5	36829607	36830607	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 1 of 18)	intron (NM_008550, intron 1 of 18)	542.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	6.52127274183449	7.18826708155865	6.79317510706175	6.60034639065919	6.58069837685325	6.59454696808352	-0.43669012068605	0.13949456858133	0.499084106249493
Merged-chr11-120150526-4	chr11	120150027	120151027	+	973.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	824.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	7.181751360401	6.9288277400598	6.86905641595683	7.30273755879252	7.47520432846519	6.8971565704802	0.38108094218302	0.168608525633214	0.545219112423771
Merged-chr13-37356762-4	chr13	37356273	37357273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	11428.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.85531621209774	6.61911238246766	6.69294767754012	6.78651697455358	6.8588950096201	7.05040745150682	0.264592656010297	0.306260721944154	0.702426807561651
Merged-chr11-70453430-5	chr11	70452953	70453953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151497)	TTS (NR_151497)	1522.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	7.24180271201721	6.95093036551794	7.07970614520713	7.13251435129148	7.01392814634047	7.07297934517679	-0.0372528517728839	0.879412991972035	0.972083703102674
Merged-chr7-45062555-7	chr7	45062019	45063019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	90.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	6.39362457594985	6.82888550591401	6.85605817289891	6.80635095015286	7.11847227172431	7.03612408340823	0.448382308508431	0.110018766542778	0.443362807437337
Merged-chr17-29498257-4	chr17	29497768	29498768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7223.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.1944293320657	4.7746789707099	5.50252448008078	5.2517748922098	5.11800488900785	5.45725303260869	0.194312697405476	0.632355935971688	0.89551362251836
Merged-chr8-95488193-3	chr8	95487697	95488697	+	816.579346	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009974, intron 1 of 11)	intron (NM_009974, intron 1 of 11)	623.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	3.99290477295484	3.48984467210781	3.80537694165807	3.63488540647238	3.36656223884285	3.56135583176301	-0.889115409958914	0.134567632502416	0.490430403023745
Merged-chr6-87590736-4	chr6	87590226	87591226	+	985.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021381)	promoter-TSS (NM_021381)	17.0	NM_001355655	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	3.24762754881208	3.22190019923186	3.15787223523051	3.41468287725932	3.3160431833143	3.40268509053606	0.664375049752955	0.277321589030881	0.67454414854118
Merged-chr15-81361032-8	chr15	81360507	81361507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011399)	promoter-TSS (NM_011399)	-242.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	7.24140065538883	7.06457881358497	6.9654682615873	6.92393212399836	7.09825861831908	7.2721805812409	0.00120347463102307	0.996217643299757	0.998961028701257
Merged-chr1-118389383-4	chr1	118388897	118389897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359346, exon 1 of 38)	5' UTR (NM_001359346, exon 1 of 38)	339.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	6.55000034329878	6.98722879011172	6.79013435923068	6.74638404965523	7.13492104009494	6.94994685790689	0.259200926910425	0.353302988249068	0.740643833675009
Merged-chr3-57651712-4	chr3	57651204	57652204	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175095)	promoter-TSS (NM_175095)	-20.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	5.69343697845211	5.74834396858826	5.66631145180914	5.52997438626931	5.36404919298847	5.50573129997203	-0.455972960103301	0.154121206536667	0.523241150332653
Merged-chr12-85710791-4	chr12	85710288	85711288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24068.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	7.13700678236758	6.93255319301863	6.67542164186562	6.61084676332503	6.53841546840534	6.20909439095165	-0.726710625330818	0.0115583506552505	0.111364895938176
Merged-chr19-6289865-2	chr19	6289365	6290365	+	933.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	12969.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	3.4039224328155	3.15390553869748	3.53145459724409	3.62893256715753	3.15873457541698	3.97878108488863	0.917254560755253	0.174085129563885	0.553316607232963
Merged-chr1-178405682-4	chr1	178405183	178406183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026626)	promoter-TSS (NM_026626)	-335.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	8.64998035917914	9.06293635937469	8.6116414340775	8.47640934985944	8.74539973914418	8.66690487056989	-0.221222657579563	0.345207981874388	0.733666487940844
Merged-chr10-128345067-4	chr10	128344550	128345550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7323.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	5.69447755422644	5.8140099682123	5.7337868646555	6.06656182069854	6.21856041082795	6.10769438753636	0.675956776638656	0.0218574950644261	0.171318618059605
Merged-chr11-79905588-3	chr11	79905075	79906075	+	935.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	56812.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	3.82762880338073	4.23272495589533	4.30323169338323	3.97299916079188	3.60389159918143	3.91951801311898	-0.896215645665023	0.100864021196181	0.423513683621661
Merged-chr10-67081813-3	chr10	67081303	67082303	+	813.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	15185.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	4.38667484538692	3.93842300191935	3.81272083065779	3.90508558469368	3.74251392339294	3.7746802556933	-0.819478136080831	0.134306280478968	0.48999679861858
Merged-chr19-5622805-1	chr19	5622305	5623305	+	541.0	f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-12711.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	4.18695606856704	4.62027201799101	4.69938460517901	4.47579308357065	4.53032322872176	4.61212784192204	0.0556912486991618	0.902102257151284	0.977397387787646
Merged-chr3-22142546-3	chr3	22142032	22143032	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	65880.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.2719036006881	3.34314807910698	3.15273715228835	3.40919402273749	3.20067369650272	3.34250348911027	0.218453782381454	0.725684832863873	0.929707128236285
Merged-chr8-115709583-4	chr8	115709076	115710076	+	891.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2682.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.15726836587961	5.09354576305339	4.99696290588908	5.41300410904765	5.24194966685924	5.29986699127256	0.46857222462014	0.185397734315169	0.569470877644115
Merged-chr18-46958475-2	chr18	46957975	46958975	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178377)	promoter-TSS (NM_178377)	-401.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	5.48687039085846	5.7888386985749	5.80731321840117	5.48765235719212	5.41241955471559	5.47014918661301	-0.457868235816224	0.166209719368049	0.541347284939125
Merged-chr2-35349433-4	chr2	35348945	35349945	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	3.29380204829452	3.08669863109382	3.48175026701229	3.2478903273628	2.99937208946739	3.55129933894186	-0.0524732735880927	0.938209365387602	0.986298655420293
Merged-chr6-72151949-2	chr6	72151449	72152449	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-28752.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.8418338037246	5.06269205689047	5.33006527546016	5.03145116056883	5.00321191337534	4.74232276234655	-0.307382048653014	0.442683690091041	0.803309923833629
Merged-chr1-138973755-4	chr1	138973308	138974308	+	908.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-3849.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	5.08600140511903	5.16882632993843	4.93118457563399	5.05436659527198	5.07996316179323	5.20507358846344	0.0758525971384077	0.835785287709226	0.961841448068673
Merged-chr2-59612515-3	chr2	59612089	59613089	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	CpG	547.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	5.85641610916341	5.80440245794929	5.535842300915	5.87015105288642	5.60728604839799	5.23442202887493	-0.256967483836487	0.471547687876758	0.820076079273681
Merged-chr9-123853733-3	chr9	123853255	123854255	+	791.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1856.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	6.77332714052106	6.77290376318869	6.56713638191342	7.10390604243251	7.21771235874102	7.15667758482748	0.683170425100886	0.00566013753997819	0.0668528883319275
Merged-chr2-6451410-4	chr2	6450898	6451898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98662.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.75888516067207	4.47150983934725	4.6488605326115	4.7710933128299	4.48019610964726	4.59323528541362	-0.0323034164903464	0.939500983667464	0.986720663284284
Merged-chr19-29418627-2	chr19	29418127	29419127	+	831.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7708.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	7.55609305644254	7.2935189536876	7.24181018940139	7.43926712023837	7.56544063693977	6.90179936191982	-0.0439564904712656	0.876033467280908	0.971162730906517
Merged-chr1-85262472-1	chr1	85261972	85262972	+	795.5	f1_balb.idr	intron (NM_175219, intron 1 of 7)	B1F|SINE|Alu	8094.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.80769762841515	4.33631431211697	3.78185981411864	3.13141733726879	3.16284001275531	3.80230939821069	-1.90139617958416	0.155745283727133	0.525704453086221
Merged-chr4-108302359-4	chr4	108301883	108302883	+	801.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1293.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	4.72175291841221	4.86454983454981	5.25493478723083	4.84070818538119	4.92502928074204	4.89679296829181	-0.141649644670999	0.726562278449181	0.929893743295524
Merged-chr19-46339374-4	chr19	46338864	46339864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-704.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	8.12425968489362	8.00314641481016	8.09681026015639	8.21870099540623	8.45301390281201	7.93581868973188	0.215866283306203	0.360317609504906	0.746546505271022
Merged-chr6-83441709-4	chr6	83441219	83442219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	-36.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	5.02294452480842	4.90245081154495	4.86942459547947	4.82378668883746	4.45587703776426	4.70331975549154	-0.62605255838009	0.123961825706491	0.471266760788856
Merged-chr13-49193223-1	chr13	49192723	49193723	+	698.0	f0_c57.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5676.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	5.92855148647349	6.01159073227661	6.23640280575477	6.11675747079021	6.09294393375784	6.15502020762091	0.109781438567223	0.705909958282911	0.922834459892351
Merged-chr3-108086744-4	chr3	108086192	108087192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028779)	promoter-TSS (NM_028779)	-26.0	NM_001289719	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	6.59741096443586	6.57174735044939	6.70447642367115	6.81497220928626	6.71230391465908	6.43261854609968	0.0790716020197561	0.767871010632987	0.942722405794903
Merged-chr11-72467198-4	chr11	72466720	72467720	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153060, intron 2 of 12)	MIRc|SINE|MIR	7807.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	5.95500235162111	5.72827044805954	5.9064179974654	6.0281744598433	6.23351643745041	6.01489346977646	0.416475764927417	0.165290302034506	0.540072074597
Merged-chr4-132806996-4	chr4	132806500	132807500	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-10636.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.30226047571453	7.31034181419073	6.80016660434646	7.45713435631097	8.01285084315242	6.98650950424406	0.589427082677342	0.079324944160441	0.372360936122192
Merged-chr5-105012720-4	chr5	105012213	105013213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-29996.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	6.13092722008181	6.27624518996537	6.24749684489191	6.25975513583868	6.37668575290718	6.20445211093811	0.116902339103908	0.673740142354196	0.91163657550036
Merged-chr2-52961721-4	chr2	52961315	52962315	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103947.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.12317020980421	4.98863712854855	5.00275304572847	4.89131503889243	4.80698644329793	4.96107870817339	-0.349870431320444	0.350731559922714	0.738729675221071
Merged-chr12-70010548-4	chr12	70010041	70011041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081453)	TTS (NM_001081453)	-23539.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	4.38411271714972	4.27795485824061	4.53449090937882	4.23502795844214	4.37758471786857	4.48015304156074	-0.0802439385767459	0.857744653904489	0.966785186918462
Merged-chr11-102424185-1	chr11	102423685	102424685	+	545.0	f1_c57bl6.idr	Intergenic	MER45A|DNA|hAT-Tip100	-6137.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	6.87672787122336	6.76880845968884	6.80762870660168	6.86913837622009	6.9981480054163	6.41212320786396	-0.0318168211810626	0.910041376211757	0.979763851187084
Merged-chr5-16554540-3	chr5	16554028	16555028	+	866.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289458, intron 2 of 18)	intron (NM_001289458, intron 2 of 18)	627.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.51774609844281	4.71355187830339	4.91254438918262	4.94843542102963	4.85741308538686	4.9063343921521	0.428888010150894	0.285206982629475	0.682803044384664
Merged-chr14-103099722-4	chr14	103099212	103100212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-146.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	8.22645269205826	8.12293446395381	7.62484634851304	7.96872925423105	7.8375246999358	7.62204279413945	-0.290988219995968	0.265738297037037	0.66350545993919
Merged-chr14-120137926-4	chr14	120137439	120138439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95504.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	4.49911345118753	4.62997922174482	4.89394270032751	4.46944419710243	4.38662015901658	4.18292362703189	-0.789314519749815	0.0808450067438419	0.376227702524698
Merged-chr2-116972289-4	chr2	116971788	116972788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72136.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	8.30766439260521	8.24336927650836	7.93894913591046	8.14569949899223	8.41739106739849	8.13629158543571	0.0919907947535426	0.692599992884682	0.91870248759071
Merged-chr2-131436343-4	chr2	131435854	131436854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-55508.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	6.23810018479866	5.89015920904249	5.92970162442188	6.42945073739505	6.00579429689661	5.99146087236342	0.217160446310791	0.498413729523697	0.833865667012175
Merged-chr1-166169263-3	chr1	166168757	166169757	+	555.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39036.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	5.12026834250134	5.3275033226717	4.61216762657048	4.88243995457086	4.97579478760467	4.49099030279854	-0.551147662461011	0.226149091300603	0.621140322788657
Merged-chr7-140127208-3	chr7	140126739	140127739	+	881.357178	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153783, intron 2 of 6)	intron (NM_153783, intron 2 of 6)	1554.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	5.71085987279319	6.19811500445133	6.20299861666357	6.19995039569412	6.2301479667083	6.07209632408328	0.20425348841822	0.515587738701995	0.843789971170832
Merged-chr17-25014083-6	chr17	25013565	25014565	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020608, intron 1 of 20)	CpG	1165.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	5.59107236196222	5.46130748673929	5.66459742322413	5.55333602786987	5.22849202681085	5.389139437568	-0.341111514662865	0.315092161733846	0.709443354084583
Merged-chr4-33251067-4	chr4	33250574	33251574	+	744.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2287.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.54096347949636	4.79351664011092	4.94695322570716	4.80657348486899	4.93982506644009	4.83211396398851	0.23122430134283	0.567324387352227	0.867922102830153
Merged-chr1-38012781-3	chr1	38012296	38013296	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	L1MD2|LINE|L1	14786.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	7.51002177933862	7.608835539857	7.45626881676763	7.54216360571781	7.81287638391508	7.32481185433449	0.0834109718301102	0.736429248605022	0.93314645298821
Merged-chr1-134081773-2	chr1	134081273	134082273	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2618.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	2.87607170399649	2.80215810529996	2.93003484237534	3.30975540035225	3.04732583691063	3.12533669372974	1.39658066279299	0.0425822073763592	0.258787886485878
Merged-chr15-86229125-2	chr15	86228625	86229625	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	URR1B|DNA|hAT-Charlie	14666.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.40628753280347	3.17081139187544	3.22045713394747	3.02249455278626	2.97640497138095	3.11747502350528	-1.04091535187118	0.113230822400245	0.449487632759869
Merged-chr7-12803620-4	chr7	12803114	12804114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026046)	TTS (NM_026046)	15246.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	5.87331346471711	5.89199824985792	5.76652366096052	5.73991202749757	5.68653972913807	5.45689231074559	-0.375249427712966	0.23350261761004	0.629830266582389
Merged-chr19-53807498-2	chr19	53806998	53807998	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170847, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	-84733.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.35171931938428	3.48671776202617	3.32367152029336	3.87043399149271	4.10349350916223	3.95016499433524	2.04433930559942	0.000471613798938771	0.0100424375766369
Merged-chr2-29624476-4	chr2	29623964	29624964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4744.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	8.46844511626803	8.64195926715645	8.01862253169876	8.24775522296572	8.57949969411064	7.87740996089908	-0.185756827221456	0.514502690962853	0.843107848235413
Merged-chr11-84993834-2	chr11	84993382	84994382	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 30 of 33)	RMER6A|LTR|ERVK	36128.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	4.02610828952753	3.92941342968135	4.29323074548796	4.1408772635666	4.169093590026	3.94484718348718	0.0366524705940131	0.941426315547867	0.986985070753211
Merged-chr17-5577714-2	chr17	5577214	5578214	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	85114.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.37104646270433	5.40753678043	5.30611550498205	5.27898672581452	5.1212878143178	5.1384900805354	-0.371522230182876	0.282410827377374	0.680396100541927
Merged-chr17-27565308-4	chr17	27564825	27565825	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002895, intron 1 of 4)	intron (NM_001002895, intron 1 of 4)	402.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	6.95679898620811	7.07442307078529	7.01636232236695	6.77383009308886	6.97702347277779	6.65458472079286	-0.303466412292383	0.233402308902816	0.629772985251492
Merged-chr7-97944695-4	chr7	97944193	97945193	+	696.737488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 1 of 17)	L1_Mur3|LINE|L1	24735.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	4.21424222385846	4.03142648137726	3.97081461187166	4.13333069529637	4.09786958133071	3.98989952075418	-0.00831151868928423	0.986402196756636	0.997033990984076
Merged-chr2-145371008-4	chr2	145370511	145371511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	128400.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	4.84876931832805	4.87425861625507	4.6433681396025	4.89377858901844	5.06123833214078	4.94727936689245	0.380188188392514	0.328170186092619	0.720352041691366
Merged-chr8-25014197-2	chr8	25013686	25014686	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	2736.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	3.89715679276112	3.95359067915631	3.84459178648144	4.34292600887342	4.46024085848873	4.26628828006979	1.31365352662668	0.00645231204246014	0.0736778265025958
Merged-chr11-100626375-4	chr11	100625882	100626882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3427.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	6.9345818784337	6.67557106435224	7.05421199501893	7.52826201077232	7.76548413685786	7.18919294167758	0.947541624151979	0.000553200147378389	0.0113740246758243
Merged-chr13-107025831-4	chr13	107025327	107026327	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015471, intron 1 of 3)	RMER6A|LTR|ERVK	3257.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	3.76985638130811	3.71587603591272	3.56383762036353	3.3509960593374	3.41024182141672	3.73822258401092	-0.665563786275396	0.255429153685626	0.652537847534371
Merged-chr19-21713629-7	chr19	21713124	21714124	+	984.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	60315.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	5.84796526077325	6.23080080295375	6.30819262441447	6.10788382133024	6.30178869786472	6.21087871193787	0.124754058155285	0.681707352643544	0.914836226675118
Merged-chr4-72168680-1	chr4	72168180	72169180	+	797.666687	f0_balb.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	32213.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	3.7949616638109	3.82582197766862	4.2637941999298	3.71356702353445	4.11678445436711	3.82779669360398	-0.197133174640023	0.723219579433368	0.929000340406704
Merged-chr10-71239750-4	chr10	71239228	71240228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1684.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	3.90045503814558	4.19212698620392	3.97043104172701	4.14622993233005	3.81423036505634	3.99023422063797	-0.133598033936816	0.795024113774806	0.950977844444051
Merged-chr13-41819666-4	chr13	41819153	41820153	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	27835.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	4.52680702657668	4.25602051909549	4.42731182608612	4.17007192109847	4.05870164836067	4.23223996300133	-0.699734575868457	0.130764185934533	0.483282685584107
Merged-chr17-6827970-4	chr17	6827501	6828501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-45221.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	8.171126210624	8.56534526327746	7.95730044843304	8.32589373772346	8.50117023273253	7.5772041380327	-0.0824291657133171	0.792005769869937	0.949858980964798
Merged-chr15-80038010-3	chr15	80037550	80038550	+	780.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23242.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.64936716154764	5.71584151913227	6.03241736064476	5.72345952872338	5.83053648365472	5.68855161143086	-0.0796820394492307	0.803557291322901	0.95351077179348
Merged-chr8-13840320-4	chr8	13839816	13840816	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2227.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	3.8675911028577	3.94132827404644	3.69585496022547	3.69918068654736	4.01284485232256	3.82073690070246	0.0398998782146423	0.940718807802644	0.986881313555047
Merged-chr4-11481859-4	chr4	11481333	11482333	+	848.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4125.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	4.85524747205028	4.54784053065703	4.67760017177267	4.87177214901668	5.03947650165088	4.78476341039151	0.475967106402037	0.239887011597755	0.6368091379092
Merged-chr7-101357906-2	chr7	101357409	101358409	+	969.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	9840.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.82083651761603	2.49779160003261	2.84063296096927	2.44576233379013	2.51594081064908	2.61094011378805	-1.15750512787238	0.151078038543279	1
Merged-chr9-78481016-4	chr9	78480496	78481496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010106, intron 1 of 7)	CpG	728.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	8.46098521979257	9.0136661571996	8.53929019176656	8.27353771811553	8.58470789031905	8.46479756576958	-0.347455820738347	0.163648375467282	0.537684265582691
Merged-chr5-110110117-4	chr5	110109609	110110609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	17.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	5.48393504064699	5.69835820497073	5.79872775209006	6.03040225749251	6.00645677103462	6.11066583793858	0.689441427173378	0.0246932081587187	0.18556052962913
Merged-chr17-17394184-3	chr17	17393681	17394681	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8505.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	6.94074700496567	6.94097647434355	6.53966305815397	6.82332136931769	7.10462800358476	6.81883647271721	0.152082969557481	0.57944636748377	0.87251983107891
Merged-chr3-54814811-4	chr3	54814302	54815302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-7011.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	3.35932891869705	2.98603919485291	3.3284389839091	3.11741396905864	3.17292966190947	3.34496646787242	-0.0890717540270882	0.892311697712159	0.975080067545253
Merged-chr12-111587628-3	chr12	111587122	111588122	+	849.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021516, intron 1 of 16)	MER20|DNA|hAT-Charlie	13112.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	3.66977143368628	3.78675144981361	4.20233372071479	4.09894158556502	4.20821386170565	4.43211083143409	1.03036390371697	0.0511837003069706	0.28838660178375
Merged-chr17-71834791-3	chr17	71834301	71835301	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52854.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	6.35932925920342	6.67496214053379	6.66211816754128	4.21547644926387	3.76149191690474	4.48457721142844	-6.87077278485055	3.66658918710955e-19	2.14851797944374e-16
Merged-chr17-33928670-1	chr17	33928170	33929170	+	781.0	f1_balb.idr	3' UTR (NM_009318, exon 8 of 8)	3' UTR (NM_009318, exon 8 of 8)	-1224.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	3.63124995244346	3.97118749478263	4.11594091813522	3.88173468370894	3.9314841568442	4.13918860376859	0.206578915899994	0.698786581885416	0.920452394037037
Merged-chr11-67047362-4	chr11	67046863	67047863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025510, intron 2 of 4)	intron (NM_025510, intron 2 of 4)	5255.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	4.85744071342166	4.78839422356388	4.79838173086852	4.77570539236076	4.68115028412611	4.90044450335497	-0.0809629810818732	0.836313360709021	0.961970197512769
Merged-chr7-110615386-4	chr7	110614894	110615894	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	-474.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	7.66805625141949	7.36853799837376	7.65050437012789	7.68206222790406	7.83554184627331	7.78529185376115	0.294857338170767	0.202324070902914	0.592134687196709
Merged-chr2-128008936-4	chr2	128008509	128009509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 11 of 17)	intron (NM_028765, intron 11 of 17)	-117029.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	6.23993665001407	6.28241188038637	6.08647923818156	6.51555939177539	6.41524150582041	6.39698667117169	0.381174088246067	0.163794051046602	0.537798828885102
Merged-chr1-86442464-8	chr1	86441968	86442968	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16139.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	7.66892945247042	7.70449815512797	6.99173526724732	7.27236035043501	7.05792941438589	7.00665957381936	-0.57203687090658	0.0476102225606482	0.276380399927416
Merged-chr8-57654060-2	chr8	57653560	57654560	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040698, intron 1 of 3)	intron (NR_040698, intron 1 of 3)	-1005.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	4.25997658870696	4.30976881176248	4.42932462276377	4.65866579248902	4.67355655734136	4.49691943417924	0.728207138369707	0.0899870069945438	0.398766516376525
Merged-chr11-43569436-3	chr11	43568939	43569939	+	617.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	32123.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	3.39366083636194	3.28112399376975	3.02009139289007	3.15007511531915	3.09095219822047	3.2747841620531	-0.323505286787707	0.623052133615418	0.891251075175817
Merged-chr5-3362188-4	chr5	3361674	3362674	+	950.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	18281.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	4.65888430241578	4.73606765083055	4.59220749608251	4.60378781018962	4.27520095092866	4.69811429803114	-0.343017496523353	0.429752873371106	0.795863007201232
Merged-chr12-33176144-4	chr12	33175655	33176655	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	28469.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.53384389245261	3.80097877463527	3.61344780553823	3.56905528032383	3.58883936125997	3.83567593142667	0.0195218209250784	0.972303240236825	0.993868590220018
Merged-chr15-78449307-4	chr15	78448760	78449760	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19374.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	4.0551303224104	3.83315980066503	3.60686142528166	3.88384402738019	3.61756235154004	3.78969549666098	-0.279956261792488	0.61458738980365	0.887509542539593
Merged-chr12-8673094-2	chr12	8672594	8673594	+	557.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1040.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	2.81187239084407	2.90166210816601	2.93086410763853	2.74548780194366	2.85994032604637	2.55681539680152	-0.757227962791671	0.325493357890891	0.718159390122652
Merged-chr19-41895737-4	chr19	41895249	41896249	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199447, intron 1 of 33)	intron (NM_199447, intron 1 of 33)	404.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	6.82507271576164	6.77499654285726	6.24000701751519	6.91299619050173	7.29892138892175	6.69470149128598	0.545539392249861	0.0841225151518972	0.383754347094289
Merged-chr7-125472677-2	chr7	125472200	125473200	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	18842.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	4.99337212212693	5.45637295912807	5.35063522510886	5.75806938119641	5.64657757551659	5.61816916372874	0.755303631555815	0.0318127998978008	0.216300004404004
Merged-chr5-143510578-3	chr5	143510064	143511064	+	818.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	17429.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	5.42792490754826	5.50563146705001	5.47109152721215	5.1648557422711	4.84530209468903	5.13040470073184	-0.86219085781299	0.0159347145324391	0.138590543202174
Merged-chr8-22398499-4	chr8	22397997	22398997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	124.0	NM_181325	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	5.55383960656905	5.15258352790942	5.21126186669999	5.26975681259256	4.7768004890034	5.30696841887898	-0.391620334812355	0.327189005465033	0.719396012109034
Merged-chr12-82326660-4	chr12	82326163	82327163	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 4 of 23)	intron (NM_001167983, intron 4 of 23)	15314.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.52789319141216	4.43526094346113	4.27292255399979	4.35443435887834	4.5385034332574	4.09133773666685	-0.173052204554964	0.71365247874755	0.92557476402444
Merged-chr8-105455463-4	chr8	105454936	105455936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033371, intron 7 of 10)	intron (NM_001033371, intron 7 of 10)	15986.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	6.38691144771678	6.34502574929045	5.89453742838542	6.54094046715299	6.49943116692059	6.03441394218549	0.244832506351986	0.447153150951066	0.806270036091875
Merged-chr4-135763875-3	chr4	135763395	135764395	+	848.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085509, intron 3 of 36)	intron (NM_001085509, intron 3 of 36)	4180.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	3.74934722201235	3.84765915538675	3.47550290777973	3.74759129118103	3.71696732540064	3.66314641681057	0.0057329778410347	0.991823236561891	0.998351393644539
Merged-chr17-33904097-4	chr17	33903601	33904601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	6.26159322484159	6.31419678870642	6.42401387502004	5.95453448688216	6.40053958843659	6.51778214301451	-0.0336625057865162	0.911438140953344	0.980098870307889
Merged-chr11-23766967-2	chr11	23766467	23767467	+	575.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	4003.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.72552153026571	3.82861005366329	3.86519599771542	3.92434583559272	3.910241770663	3.88453368409801	0.323201396817599	0.52633979491667	0.849395505429032
Merged-chr16-4936278-4	chr16	4935747	4936747	+	844.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037666, intron 2 of 2)	intron (NR_037666, intron 2 of 2)	-2864.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	5.14352083880127	5.2061309812743	5.74303218051382	5.00062841189375	5.15434878451073	5.36953670959827	-0.405165813486631	0.303063865525957	0.699762414259894
Merged-chr7-80768230-2	chr7	80767730	80768730	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 3 of 37)	intron (NM_016721, intron 3 of 37)	35101.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.57023627009432	3.60745373012644	3.74650083357506	3.54770115981902	3.48074513908355	3.81508644459182	-0.0897011936490143	0.873672651759526	0.970440430875665
Merged-chr13-60714117-3	chr13	60713507	60714507	+	805.888916	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	72357.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.8508627288409	2.63543887641625	3.16158301496568	2.58898589491562	2.59017188196329	3.01774423140606	-0.756596823945764	0.346808964309543	0.735006911502857
Merged-chr14-118910644-5	chr14	118910137	118911137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360412, intron 8 of 22)	L1MC3|LINE|L1	12154.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	7.06873816920893	6.67762283542365	6.31424686627506	7.09303385090842	6.94891874658068	6.41773804373237	0.193670177908662	0.563425266856455	0.865946722410681
Merged-chr2-119675566-3	chr2	119675045	119676045	+	998.888916	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_030112, intron 1 of 17)	CpG	477.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	7.65448579797302	7.81858413771419	7.37432006752267	7.67323383073572	7.39915832337893	7.5872530501948	-0.118473750963148	0.632500595506577	0.895570730539959
Merged-chr13-58495076-2	chr13	58494576	58495576	+	794.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91733.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.39200491182492	3.05079518296901	3.20686136169893	3.09920911112991	3.09065644684693	2.97635201700046	-0.718371462487711	0.283878686414723	0.681514542091937
Merged-chr5-113672643-4	chr5	113672159	113673159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22269.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.67312646168234	5.71380659864958	5.82003157552971	5.82367469249205	5.53510525186125	5.9048075748767	0.0365241322021425	0.909511581540869	0.979506609676848
Merged-chr11-22631701-4	chr11	22631182	22632182	+	884.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119399.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.77151517482891	5.33584803444596	5.04422301962053	5.12498807965759	4.89168254272589	4.6810261170465	-0.339579299059602	0.420268924773133	0.789521469804967
Merged-chr17-55963349-4	chr17	55962833	55963833	+	888.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3932.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	4.36777532489447	3.94063905068629	3.96913814362862	4.55319582994368	4.46682810553682	4.04183774112118	0.71075056080464	0.170404364381848	0.547769223545867
Merged-chr5-135475658-3	chr5	135475152	135476152	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	69470.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.9535623859858	5.14484663153267	4.98451044887331	5.17822996822047	5.24105230578021	5.18839211821665	0.354509853407585	0.325578867889551	0.718159390122652
Merged-chr17-88435880-4	chr17	88435375	88436375	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4829.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	6.39629483511959	6.19692835361215	6.28652520193489	5.83971461682667	6.16242846932072	5.82639429033212	-0.559668939637981	0.0645636703691185	0.331147992607632
Merged-chr17-35740546-4	chr17	35740041	35741041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31909.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.8663239702239	5.23619927718087	5.36989784077378	6.22174145780087	6.60628550910196	6.18116524177057	1.44215392338288	6.22353317032344e-05	0.00190315232648391
Merged-chr8-47714527-2	chr8	47714027	47715027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-596.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	7.35586060852186	7.62600175595714	7.59245591583681	7.93546525040595	7.73056070931508	7.35627148640757	0.251958683095747	0.331706772658018	0.723003238653287
Merged-chr11-98148930-4	chr11	98148437	98149437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028149, intron 1 of 14)	intron (NM_028149, intron 1 of 14)	679.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	6.99957524707309	6.75481133821139	7.35735059718252	7.29446553445995	7.12333927798703	7.09414047688093	0.185664173756596	0.498979290450391	0.834168500990419
Merged-chr15-25985605-4	chr15	25985100	25986100	+	878.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 1 of 5)	B1_Mus1|SINE|Alu	1234.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	6.21363720861413	6.09817310785303	6.05032122392549	5.96793774738399	6.15104534830658	5.76184200428913	-0.242892231970318	0.423114854446736	0.791834393612614
Merged-chr17-5978550-7	chr17	5978017	5979017	+	997.365051	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2931.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	5.11310974713652	4.96464259044821	4.83001683337455	5.02865056750724	4.82331914300095	4.73476389533256	-0.241010691383387	0.538473412845511	0.855203059561888
Merged-chr13-74010513-8	chr13	74009924	74010924	+	859.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	1005.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	4.64460627970398	4.30434354447936	4.05410297494023	4.22790292387846	4.29501286398196	4.07305423073498	-0.423183418498615	0.395724619801674	0.773090114680168
Merged-chr11-115601279-4	chr11	115600684	115601684	+	935.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	2732.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	6.59816949641015	6.57390303362066	6.51398680442492	5.95879297043458	6.24186934819571	6.29625293466618	-0.643755372044919	0.0212026468938999	0.167798158906945
Merged-chr10-117843820-4	chr10	117843333	117844333	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	2141.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	8.45014935937246	8.2630949070688	7.91751524415824	8.42713915620262	8.92907924882696	8.03796692861268	0.407258483187808	0.170802000582151	0.54851767134078
Merged-chr8-121951957-2	chr8	121951457	121952457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016812, intron 1 of 13)	B1_Mur4|SINE|Alu	1465.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	3.63420593211707	3.7065665227265	3.49013648322935	3.83663823403669	3.61996859312162	3.56282439125733	0.209023988089826	0.710564213979024	0.924360582780855
Merged-chr4-85695388-3	chr4	85694887	85695887	+	962.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-358528.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	2.10590159871619	2.40055365757714	2.1491128870494	2.50087774404412	2.34939607002772	2.55926688995399	1.59272290539047	0.0896291792997759	1
Merged-chr12-17748239-4	chr12	17747747	17748747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	57438.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.54590451244442	4.0584262391188	4.29750629371093	4.55325427796512	4.30616892513539	4.27341917250739	0.173003848259947	0.718516332012291	0.927393968295076
Merged-chr18-40329796-3	chr18	40329313	40330313	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	L1M4c|LINE|L1	71452.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.50955611252782	2.48124016979015	2.64000343671615	3.0398300620336	2.75014646128701	3.07904277844297	2.38472552095556	0.00329202712751216	0.0451199132311039
Merged-chr12-35049251-3	chr12	35048746	35049746	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	2057.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	7.06256214524572	7.1513064326187	6.75816630297408	7.04122573090002	7.51365769070703	6.86513484262636	0.262877228571709	0.371787411653962	0.755841610252976
Merged-chr11-95417012-2	chr11	95416512	95417512	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2929.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	6.81846702732885	6.62819556455316	6.27431100109535	7.1493737031254	7.56808965958973	7.1705082765463	1.08668152100287	0.000200971387533764	0.00503839325517007
Merged-chr7-110120780-2	chr7	110120280	110121280	+	738.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1279.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	5.2269596704872	5.33529034233398	5.11570704507582	5.28524430727039	5.5188650472718	5.21563074386196	0.242311214945638	0.49577977373169	0.83269415207074
Merged-chr9-21962552-4	chr9	21961990	21962990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010149, intron 1 of 7)	intron (NM_010149, intron 1 of 7)	1086.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	4.53960813208794	4.66389486543357	4.47891755639596	4.11718482536445	4.38326303325501	4.32675820072209	-0.725343995693459	0.105706472359106	0.433880433704445
Merged-chr8-41011881-2	chr8	41011398	41012398	+	891.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-5570.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.29657724125996	3.34522674400129	3.26187781679697	3.93640203634872	3.92543359788132	3.84616735740357	2.19125575335739	0.00022596797667094	0.00552684991265007
Merged-chr13-23729244-6	chr13	23728743	23729743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9564.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	7.66559217609696	7.45532251149129	7.74785266085513	7.50025212878207	7.67513165721456	7.68388630886842	-0.0028783939572567	0.990082205146344	0.997703818943275
Merged-chr8-36158231-1	chr8	36157731	36158731	+	785.0	f0_balb.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	2221.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	3.05497860028753	3.22637413368326	2.97800019150715	2.69786454683044	2.86022438544794	2.73260070337206	-1.61445112665347	0.0315799900281387	0.215297649345462
Merged-chr12-40538484-4	chr12	40537992	40538992	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	92439.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.6912521819708	4.80414373139167	4.90799512471991	4.90807662123869	4.65138363200152	5.19882831672795	0.280602062367515	0.498321450738326	0.833856267944725
Merged-chr15-38244999-4	chr15	38244467	38245467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	25764.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	3.71046170769537	3.97118091760476	3.7688836627322	4.12017417593726	3.51924325632108	3.67666468906248	-0.0783397927039987	0.892782728138599	0.975146620821922
Merged-chr17-35123075-2	chr17	35122575	35123575	+	725.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001128597, exon 2 of 3)	exon (NM_001128597, exon 2 of 3)	123.0	NM_032460	81845.0	Mm.7405	NM_032460	ENSMUSG00000092417	Gpank1	Bat-4|Bat4|D17H6S54E|G5	G patch domain and ankyrin repeats 1	protein-coding	2.87212513851633	2.89949103762461	3.08954390718241	3.24089367845719	2.98372896338243	3.27373576084083	0.977335355915258	0.151059544036305	0.518347890904894
Merged-chr16-31232744-2	chr16	31232244	31233244	+	571.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31506.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	3.33423030918485	3.09738244088555	3.39600968576478	3.70788367348964	3.35136404645135	3.35413961570324	0.789482262506191	0.211078574873988	0.603477171445767
Merged-chr17-47503262-2	chr17	47502762	47503762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	-971.0	NM_022015	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	4.56364843273452	4.58019578145508	4.76303784953	4.59397229379187	4.73317443371001	4.50779981037125	-0.0191202696316593	0.963439235665116	0.991116725160803
Merged-chr14-73239065-3	chr14	73238579	73239579	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1188.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	7.80486292200851	7.93875313829566	7.70453479816189	7.97745035563737	8.31171895929364	7.75190430290295	0.314354855907074	0.208632066019097	0.599649635554992
Merged-chr16-36875040-4	chr16	36874536	36875536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134111)	promoter-TSS (NM_134111)	-210.0	NM_134111	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	8.47061955921614	8.62888373962978	8.13885743887081	8.36797134895543	8.42499825027683	8.03243010218716	-0.198807172420606	0.418902499669978	0.788758778768065
Merged-chr10-4432473-4	chr10	4431970	4432970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	-82.0	NM_001358796	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	6.80145300022454	7.12211911330088	6.86405601409239	7.01861451355371	7.25061676563796	6.79957578826531	0.161464507417832	0.552103683874342	0.861546661145201
Merged-chr4-11235677-4	chr4	11235171	11236171	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159595, intron 8 of 26)	intron (NM_001159595, intron 8 of 26)	18588.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	4.54571602245505	4.59294954583669	4.34927903986241	4.60877786094674	4.53639848480601	4.7127053526846	0.260247285945817	0.54044339192535	0.85632302227606
Merged-chr13-5791133-2	chr13	5790633	5791633	+	810.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66959.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.24260233551132	3.38681883554399	3.25375667954373	3.46969847126394	3.69358469389554	3.44398877358276	0.941959951573662	0.119365032274616	0.461851923064695
Merged-chr11-103375975-3	chr11	103375469	103376469	+	857.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	PB1D10|SINE|Alu	-12277.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	5.41543837486051	5.5598180594355	5.38581282071465	5.31150838239116	5.33300786308299	5.5075313872592	-0.156650385245327	0.641320002858221	0.8989154097126
Merged-chr17-56626365-2	chr17	56625865	56626865	+	768.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357897)	promoter-TSS (NM_001357897)	538.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	6.26419616839786	6.32016952816972	6.11707887333662	6.20177369712225	5.82859156637084	5.54423489814101	-0.590634865150173	0.0722672120780186	0.353157446871531
Merged-chr2-73540429-2	chr2	73539929	73540929	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10942.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.62904976733529	5.52112257413977	5.49199225980303	5.57554781518691	5.94838782051872	5.22622337596219	0.159437032123107	0.664459391302169	0.907585158243155
Merged-chr14-14632735-3	chr14	14632202	14633202	+	841.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70323.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.50061959400778	4.81933855859142	4.76036191633757	4.59129708543485	4.58452414374404	4.45878854183258	-0.356493831633323	0.399662646933048	0.776009929668293
Merged-chr9-13663452-3	chr9	13662961	13663961	+	711.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	1001.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.26456060328547	4.89430593028474	4.82224877060941	5.02562228903267	5.05338103430721	5.14155094427237	0.113216765973665	0.771028878952439	0.943565600102578
Merged-chr10-81402856-2	chr10	81402356	81403356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-6719.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.80545798063239	5.46973765871199	5.95526156544218	5.92571500994252	5.65456320760231	5.64479041415038	-0.00102689991784589	0.997571925739897	0.999517915335661
Merged-chr9-105521348-3	chr9	105520849	105521849	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253831)	promoter-TSS (NM_001253831)	-92.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.01868847235483	2.85869168031773	3.11092896532148	4.06672052460121	3.49297551290675	3.43895128037483	3.0250924180112	4.03037600438129e-05	0.00131616768670549
Merged-chr15-59374125-4	chr15	59373609	59374609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026746)	promoter-TSS (NM_026746)	43.0	NM_153548	223593.0	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	8.80494737939842	9.27967386591299	8.46507714129733	8.62307738107182	8.87635245291476	7.96722655964076	-0.478104141686943	0.134260686982644	0.489993860307513
Merged-chr1-177259817-2	chr1	177259204	177260204	+	761.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10937.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.61103808243843	4.5705049006331	4.85409482156469	4.37445511578988	4.68571476218573	4.54106275112185	-0.314753826554754	0.465702014126274	0.817146354802119
Merged-chr11-68968049-4	chr11	68967557	68968557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028048)	promoter-TSS (NM_028048)	-74.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	4.41258129066633	4.84079994236918	4.7842879749887	4.55694748044678	4.91329020884908	4.43539333633205	-0.0627019864059631	0.890355730737865	0.974513293810689
Merged-chr9-50604679-2	chr9	50604179	50605179	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	778.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	6.50756026088027	6.3776731454451	6.13608492073091	6.19515610963694	6.13189672236567	6.34110748363762	-0.233121001215087	0.417430195102115	0.787983658296622
Merged-chr3-115695790-4	chr3	115695290	115696290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19265.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.50469649729198	6.85226546978207	7.05177295353875	5.78066349413157	5.96149617178166	5.89666610551096	-1.53525352038281	4.90895272242573e-07	2.88806765133718e-05
Merged-chr11-75509053-3	chr11	75508498	75509498	+	749.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138659, intron 41 of 41)	intron (NM_138659, intron 41 of 41)	-1096.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	4.31177952577429	4.20557912886615	4.86926069276131	4.11724399660841	4.27158874736376	4.42935134464964	-0.53911392255048	0.279515785181633	0.677205609521119
Merged-chr6-83007818-2	chr6	83007318	83008318	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	25653.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.82894935533762	3.68699585882577	3.92655456420602	3.70856074041374	3.62655045415828	3.69703513231683	-0.455011417755893	0.39578228263693	0.773144649859171
Merged-chr3-79287919-2	chr3	79287419	79288419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57457.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	7.44790485699979	7.81843263298086	7.39528680299242	7.23677384982344	7.63235315853079	7.38671081818752	-0.203813658413129	0.437102409378077	0.79976715856888
Merged-chr7-127512972-4	chr7	127512470	127513470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024331)	promoter-TSS (NR_024331)	-101.0	NR_024331	629159.0	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	7.77090906343635	7.4526722149477	7.80870383963669	7.97301459592657	7.96587166640589	7.89716111690252	0.378921230546263	0.0991747107624382	0.419912952021217
Merged-chr17-87025415-4	chr17	87024883	87025883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008838)	promoter-TSS (NM_008838)	18.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	6.9016127496585	6.81267162955628	7.08123888589894	7.23882314871175	7.35445348136419	6.71420289458548	0.321778661308146	0.256563511328198	0.653682511929703
Merged-chr1-58505040-4	chr1	58504531	58505531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271526)	promoter-TSS (NM_001271526)	78.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	5.30894571925581	5.54051815640433	5.56489296801997	5.4843471651532	5.51855375397471	5.5154051171054	0.0651061033282584	0.844104420656639	0.963711687630021
Merged-chr17-32284056-4	chr17	32283553	32284553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	70.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	8.74249377231491	8.47932736253389	8.41514672407843	8.7058608760819	8.3048593502374	8.57371030923087	-0.0270748152914821	0.907024547652141	0.978868492078838
Merged-chr10-95529671-3	chr10	95529200	95530200	+	811.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	14538.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	6.34608261458033	6.33780496181548	6.2270975507331	6.41639600901235	6.8240545098841	6.8087099263388	0.625384977518631	0.0263022892860805	0.192570249618671
Merged-chr2-153113415-2	chr2	153112915	153113915	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	LTR16C|LTR|ERVL	4947.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	4.74976220575483	4.5925334599471	4.87425875766117	5.19621786494539	5.14745009451313	5.82766885800355	1.42769042439526	0.00063766050152488	0.0127299556168143
Merged-chr12-65154495-4	chr12	65153998	65154998	+	929.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172578, intron 5 of 13)	L2a|LINE|L2	18082.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	3.21938253119232	3.36692054891623	3.40776183158519	3.05610642562298	3.40713028217351	3.0734392013694	-0.537105774896394	0.420498571222538	0.789742624867499
Merged-chr18-65524274-3	chr18	65523779	65524779	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55951.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.22867438623372	4.21023140030904	4.27171733590765	4.62563833063231	4.12856939429238	4.34003356385971	0.378495163675996	0.424258929559547	0.792602112765787
Merged-chr1-45837876-2	chr1	45837376	45838376	+	762.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42710.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	4.16578128654338	4.04188392103832	3.84763214914745	3.57002019246059	3.72628011080538	4.06305190949845	-0.729112230751502	0.184026436504809	0.56763314534001
Merged-chr7-43580737-2	chr7	43580237	43581237	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	1151.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	4.51426847835089	4.30414535937962	4.65667609212521	4.71846264730759	4.7173836077418	4.51856900408098	0.414594559699848	0.334472166510363	0.724985933911491
Merged-chr15-83174353-4	chr15	83173839	83174839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2131.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	7.17507449089204	7.10633507841761	6.52705719978358	6.80093471606675	6.94291897450678	6.71170790508751	-0.234644332129398	0.420356399740853	0.789584525478281
Merged-chr19-46510151-2	chr19	46509651	46510651	+	934.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	8503.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.59822538251087	6.76491055970354	6.78242632240554	6.70108465384958	6.97399737773636	6.74881924660732	0.165035677630536	0.526601447945391	0.849575940031528
Merged-chr7-141468735-4	chr7	141468228	141469228	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-61.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	5.99171077256831	5.61377353414176	5.92681843328617	5.51991895592189	5.8344617476961	5.48539079783385	-0.391089255745743	0.249623082190806	0.646597062009545
Merged-chr5-64412567-4	chr5	64412055	64413055	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55387.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.78788704872412	4.7362090553056	4.70047833211521	4.61283439630401	4.61581150532555	4.76620005137566	-0.19607817175457	0.624510392855738	0.89205968496773
Merged-chr6-116663574-2	chr6	116663074	116664074	+	696.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	10262.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.53869013215726	6.24601242783681	5.80956523155917	5.99849482702676	5.76684354468916	5.89849862234052	-0.610698238606661	0.0674281082536229	0.339619184277864
Merged-chr17-33903502-4	chr17	33903011	33904011	+	915.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1624.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	6.57625043612212	6.58139298110878	6.60184871098918	6.33879088581668	6.6109887712534	6.76996229081711	-0.00792546321468012	0.976805415575824	0.99476201281709
Merged-chr19-6240994-2	chr19	6240494	6241494	+	812.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-674.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	4.33863155431809	4.17373936243277	4.34022002327115	4.13297531086087	4.3728221998361	4.2750992544329	-0.0400418314830382	0.930752424845865	0.984662119275083
Merged-chr18-38348759-4	chr18	38348257	38349257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9764.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.67837524483832	4.69349511537806	4.71065266837576	4.43163129384096	4.45191954888051	4.62042137356481	-0.477340408834242	0.248779446880588	0.645819769301048
Merged-chr5-110421151-4	chr5	110420646	110421646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	27357.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	5.24867730917017	5.15318975717812	5.30746957781768	5.26686256065394	5.17058303231537	5.83431525708003	0.412959884350812	0.283293518354082	0.681215891353649
Merged-chr1-171843803-3	chr1	171843233	171844233	+	747.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	B1F2|SINE|Alu	4036.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.6268210563865	7.4673352392629	7.33273740014403	7.78064283494906	8.15311442937394	7.82923642266346	0.650808637518496	0.00753855927456293	0.0825027541914813
Merged-chr8-39641763-4	chr8	39641252	39642252	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	926.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	7.52012653421931	7.8866774114411	7.48980425638663	7.80675664194276	8.09116579480015	7.61754871352884	0.302049624455771	0.245050066902774	0.642381314494918
Merged-chr7-4739856-4	chr7	4739349	4740349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001115018)	promoter-TSS (NM_001115018)	-278.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	6.55360432491767	5.71183911392426	6.10439882260273	6.3323301825005	6.12004514401734	6.14337854064462	0.0439880990286534	0.899699097635153	0.976683360561224
Merged-chr12-40016530-1	chr12	40016030	40017030	+	820.0	f1_balb.idr	Intergenic	Intergenic	20846.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	4.58623363058581	5.15259806308061	4.75317877815736	4.58993465391077	4.51910817288865	4.39022466176367	-0.832344600520097	0.0613519558021931	0.321188721428771
Merged-chr9-46283010-4	chr9	46282509	46283509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146000)	promoter-TSS (NM_146000)	-3.0	NM_146000	215051.0	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	6.55785627697212	6.67431062295881	6.88088489288642	6.74249588235668	6.95846588326631	6.95272698378201	0.28916749591033	0.269001667000492	0.666194755066135
Merged-chr15-36879877-4	chr15	36879372	36880372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-82943.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	4.85596470812039	4.62595776815468	4.85119340418292	4.798087344665	4.4268877262011	4.68998815627419	-0.323405212031537	0.44249490076986	0.803210868548523
Merged-chr1-55505160-4	chr1	55504657	55505657	+	951.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.86750794312789	6.00412734894553	6.34916581770673	5.54003035407949	5.61204307034455	5.81390553121218	-0.75749700790437	0.0204958546568024	0.164014144478094
Merged-chr1-45865922-4	chr1	45865427	45866427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59667.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.34902071989907	7.24751668733729	7.38555568790792	7.46452164557473	7.89500405335535	7.59411296006074	0.504423074840983	0.0394280394724798	0.24660042235473
Merged-chr14-65064803-4	chr14	65064305	65065305	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 3 of 5)	RMER10B|LTR|ERVL	33301.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	4.27196970105272	4.06320431317707	4.05529587407901	4.1499364682078	4.15547432062487	4.47595624726934	0.337672430311017	0.483711076892304	0.82645869395127
Merged-chr5-115333875-4	chr5	115333372	115334372	+	861.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025573)	TTS (NM_025573)	6695.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	4.96020449146954	4.7124370322419	4.78300106643288	4.95465848695098	4.94154345331724	5.06585163612031	0.351000854869521	0.36237817474693	0.747851834735049
Merged-chr6-113099794-3	chr6	113099295	113100295	+	882.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	-5140.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	4.92764493711995	4.96442284904039	5.15421142850525	5.2736707440266	4.72115564991673	4.94433919500479	-0.0341376668515006	0.932671067281712	0.985256441991909
Merged-chr10-63247687-4	chr10	63247206	63248206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	3909.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	5.29949795581387	5.37423085348417	5.52768653536862	5.29287336193645	5.75863057709095	5.56235364183349	0.311106200522758	0.37469054500356	0.758118627242714
Merged-chr3-60468455-2	chr3	60467955	60468955	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4375.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.73285417615527	4.30828075733918	4.9723673782964	5.02746015655118	4.90818158117892	5.49945976562507	1.02821565890529	0.0236459044769869	0.180307077603267
Merged-chr12-59217706-2	chr12	59217206	59218206	+	963.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	B1_Mur4|SINE|Alu	1777.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	6.32783025707529	6.62533577363626	6.06803073074641	6.58268326341799	6.70612612501754	6.35070890895314	0.305576076806583	0.314939805890012	0.709299260050302
Merged-chr8-45332453-2	chr8	45331953	45332953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	743.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	6.66438064577279	7.03567048175041	7.05453808562958	6.88595559492683	7.01607012603939	6.80644745010386	-0.0238399809986785	0.928536019653582	0.983810947287576
Merged-chr5-113636034-4	chr5	113635533	113636533	+	989.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7570.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.48357359863401	7.69656860297139	7.54903313646089	7.939426447508	7.84815766332703	7.50385631334857	0.292929211730011	0.226065795662394	0.621097341012672
Merged-chr11-94587547-3	chr11	94587024	94588024	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	ID_B1|SINE|B4	14262.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	3.86217635790578	4.01615169924194	4.28127567334726	4.13390615897083	4.00136233806116	4.42809218815355	0.381621433478989	0.453847357281787	0.809979841654596
Merged-chr3-69154907-4	chr3	69154393	69155393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	23660.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	5.86959244354234	5.7662653890882	5.56716279516879	6.14963643929997	6.06148002478056	5.95262569975554	0.545261529149619	0.0752709341110072	0.361275291152819
Merged-chr11-78751669-4	chr11	78751128	78752128	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_197989, exon 1 of 1)	exon (NM_197989, exon 1 of 1)	101.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	5.58687014571269	5.61355661050543	5.73921865269688	5.70779228288713	5.87105289205316	5.2608339118356	0.0209855422754363	0.952234070434411	0.989068549972429
Merged-chr10-59888485-2	chr10	59887985	59888985	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019965, intron 1 of 8)	B4A|SINE|B4	8894.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	3.68933661337638	3.91399907144539	3.73839419140006	3.54903372239714	3.56504997408809	3.65112316741738	-0.686394001136243	0.210798477752187	0.603098348627511
Merged-chr5-120525887-2	chr5	120525387	120526387	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	14695.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	5.56457268994675	5.3868343252393	5.29531541546371	5.99815295207002	5.74447749993341	5.32658567024385	0.564015787773575	0.119384922927364	0.461885928625102
Merged-chr6-89281665-6	chr6	89281189	89282189	+	915.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4036.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	6.50051163204942	6.5838111865642	6.70723899713481	6.34903033865347	6.45487044756056	6.82296484181752	-0.0749960428364475	0.791088665824737	0.949694766870106
Merged-chr7-121332875-1	chr7	121332375	121333375	+	978.0	f0_c57.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59421.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.62937007843632	5.33184342142092	5.84552279129441	5.4444729966623	5.56163151545502	5.58424155195114	-0.14564932640244	0.67332404905201	0.911361487979173
Merged-chr10-44602294-4	chr10	44601798	44602798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143550.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.68907875790584	6.46107401764864	6.52742629121264	6.53352897095025	6.55960599655088	6.60372716613258	-0.00019928112584944	0.999394110456269	0.999920050950963
Merged-chr10-127621148-6	chr10	127620671	127621671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-23.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.63679349827137	7.45147912372614	7.77544851427487	7.77550007035051	7.75716894410273	7.69456609356379	0.17647772310166	0.437381433586838	0.79993041862787
Merged-chr8-33654731-4	chr8	33654365	33655365	+	804.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	1627.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	4.54703222916817	5.07258837470017	4.76766972099528	5.95285726559068	5.93262019663918	6.39148361336331	2.47576908605739	8.24510586772946e-10	9.19649824453127e-08
Merged-chr9-40397270-4	chr9	40396764	40397764	+	995.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-20847.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.71912314204218	3.76186242795773	3.88477612110997	3.63270936390322	3.5482638674714	3.60011134896184	-0.666368309156648	0.220075954542279	0.614507907782981
Merged-chr7-114275503-4	chr7	114274968	114275968	+	849.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011965, intron 1 of 9)	intron (NM_011965, intron 1 of 9)	648.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	6.19780169575784	6.42214111923554	6.29263796848121	6.41574168325393	6.7249361336145	6.35282966628999	0.342697735062298	0.230991389493463	0.626779077951996
Merged-chr2-84620062-2	chr2	84619562	84620562	+	576.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_007615, exon 6 of 20)	exon (NM_007615, exon 6 of 20)	29418.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.60609079867608	5.45168078139861	5.9201897272875	5.78348241721366	5.75469368926891	6.04557102782844	0.360259672330083	0.279239499827309	0.67682285501122
Merged-chr19-5389774-3	chr19	5389243	5390243	+	681.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033224, exon 1 of 1)	non-coding (NR_033224, exon 1 of 1)	-1040.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	5.30570058739695	5.3252930977282	5.73675986077689	5.31735099381457	5.18639671124261	5.46319917017135	-0.274564409940751	0.446667714741947	0.806100108763013
Merged-chr4-32229438-3	chr4	32228930	32229930	+	899.744446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-188005.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.86915216559162	3.86199564624313	3.99702291937174	3.94738046128569	3.49697701127165	3.87363895472109	-0.403353511568847	0.462869549188613	0.815500327112859
Merged-chr6-87501628-2	chr6	87501128	87502128	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-5301.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.89615900287375	4.6411205764669	4.49798548497028	5.39481195863117	5.14143516903541	4.66231581048024	0.898969284341213	0.0427613899368781	0.259284956081144
Merged-chr5-36692945-1	chr5	36692445	36693445	+	585.0	f1_c57bl6.idr	intron (NM_001081232, intron 1 of 8)	RSINE1|SINE|B4	3076.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	3.52537755413158	3.27457798282127	3.67865253966909	3.3894586839194	3.15507158547935	3.44120176052705	-0.648241829024868	0.299697826855232	0.696389142703842
Merged-chr4-138216735-2	chr4	138216235	138217235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	123.0	NM_001285478	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	6.76464024340187	6.12106068836642	6.34142308799068	6.73509342343194	6.49553914600595	6.36180638300955	0.161610298667723	0.609710447790084	0.885311699497728
Merged-chr14-121906612-4	chr14	121906098	121907098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 2 of 8)	intron (NM_026861, intron 2 of 8)	9176.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.15196627078229	6.44077939751072	6.30521942413943	5.71220750012542	6.02018582882901	6.07926287955127	-0.612696895982444	0.0435405206523848	0.262264343596615
Merged-chr9-21452768-2	chr9	21452268	21453268	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	27860.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	4.90156346037023	4.67705152378183	4.83402154554249	4.48018581960748	4.55865480755226	4.63110559234218	-0.593082207673597	0.147583819852595	0.512540235204358
Merged-chr15-10470306-4	chr15	10469812	10470812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030046, exon 1 of 12)	exon (NM_030046, exon 1 of 12)	204.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	6.9954318684678	6.50569799348928	6.6946355543087	7.07900589379741	6.24424190596626	6.39672744939033	-0.185296911492408	0.589997242580659	0.877060163469295
Merged-chr2-23021793-4	chr2	23021275	23022275	+	992.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	RMER19B|LTR|ERVK	18466.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.59015355327702	5.52229543485797	5.59999549092643	5.96906226842145	5.82342655384912	5.82058188781554	0.557620233770837	0.0708856999260708	0.349195270821651
Merged-chr12-41342742-2	chr12	41342242	41343242	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	143315.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.75373929826724	2.80772052711741	2.86059889863291	2.96148603382869	2.75316819134825	2.99277759792395	0.477497050088964	0.500582274249958	0.83513356465285
Merged-chr5-64220836-2	chr5	64220336	64221336	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-9521.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.54883001354579	3.48869956720359	3.75199872180137	3.70309516475373	3.71193398311286	3.6147668644144	0.299970938354667	0.588206357444143	0.876237788811978
Merged-chr1-43444944-1	chr1	43444444	43445444	+	595.0	f0_balb.idr	promoter-TSS (NM_010879)	promoter-TSS (NM_010879)	-807.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.70301558826661	4.80429910865266	4.40412442485136	4.82942503421187	4.83798889166282	4.27337426597963	0.0647439300068762	0.889595316329869	0.974248428244699
Merged-chr18-50036412-1	chr18	50035912	50036912	+	635.0	f1_balb.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5428.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.67255700779523	4.55841490053584	4.59061413929697	4.38348871246377	4.10482609058985	4.49441171039958	-0.722667683260451	0.105892001763876	0.434406235900438
Merged-chr2-27679001-2	chr2	27678501	27679501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	1800.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.53863925029222	7.06025321919416	6.83692097753176	6.91719468519581	7.04411117935766	6.56703238038927	0.0557872971102504	0.849566628589279	0.964686793473289
Merged-chr17-28693755-3	chr17	28693252	28694252	+	719.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	1184.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.26626212496747	6.48781725180962	6.36757854286711	6.16070870045734	6.68734591598674	6.66816897877609	0.244844946630611	0.413966486850205	0.785490363902032
Merged-chr2-60284334-4	chr2	60283821	60284821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290660, exon 1 of 6)	5' UTR (NM_001290660, exon 1 of 6)	163.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	7.73299792457926	7.98677940462166	7.87850632011966	7.86326054666096	7.97841661181749	7.99569663671	0.108188279005841	0.621986262729754	0.890931597572866
Merged-chr10-10554427-4	chr10	10553920	10554920	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3787.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	6.48299279739055	6.46219032017393	6.05854140693638	6.71658985767576	6.50942960838018	6.30031519262097	0.266675967655851	0.372471856631203	0.75631407355027
Merged-chr4-62349622-4	chr4	62349140	62350140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	10956.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	5.49204511587763	5.69685840226006	5.65586219624743	5.34422599772373	5.57404921221543	5.92938114413092	0.0223006500466089	0.949037455589153	0.988169196639905
Merged-chr1-51477772-6	chr1	51477228	51478228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310549, intron 1 of 5)	intron (NM_001310549, intron 1 of 5)	671.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	7.3454129284989	7.7368498099179	6.99507650743405	7.66599266060414	7.80068096257936	7.41109056224021	0.341958293411072	0.235347056396367	0.631549225747722
Merged-chr19-43523628-4	chr19	43523115	43524115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	990.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.88380233371392	7.79921219168244	7.09112904418276	7.71599459841967	7.84094498861139	7.49270889367713	0.0679588137961631	0.81627646515019	0.956616423430214
Merged-chr3-83876514-2	chr3	83876014	83877014	+	765.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34906.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	3.94770346685355	3.80573307936773	3.84092832263794	3.4681916765251	3.61058109985668	3.86099878686998	-0.721114498368156	0.191308116239392	0.577883022436918
Merged-chr1-131389074-2	chr1	131388574	131389574	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-109511.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.12452932539196	4.32507332816245	4.61746136481925	4.29958247603765	3.97932085184672	4.6459500875689	-0.0970833544319191	0.849869996076273	0.964746847431705
Merged-chr18-46184909-4	chr18	46184458	46185458	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 4 of 9)	MTD|LTR|ERVL-MaLR	13860.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	4.51045953415858	4.50075740247213	4.76530909329291	4.65503680140861	4.37042309970075	5.29400765569551	0.530455146716148	0.275638436368386	0.673202119620203
Merged-chr15-36782200-4	chr15	36781700	36782700	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356569, intron 3 of 6)	PB1D11|SINE|Alu	8732.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	4.15188853643381	4.15699163218462	4.11659057063027	4.59106057426995	4.16518276110804	4.08651734433365	0.437036509181028	0.370970887794888	0.755155730297412
Merged-chr3-126610104-4	chr3	126609612	126610612	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	13161.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.97213259054205	5.66763921447765	5.31559325862451	5.44495645506837	5.31637875595926	5.4446949600604	-0.552391838156832	0.124221957136863	0.471601469447498
Merged-chr6-106794996-2	chr6	106794496	106795496	+	564.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_175357, exon 3 of 11)	exon (NM_175357, exon 3 of 11)	5091.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	6.42205718456101	6.49751708454114	6.37426635412805	6.55315478196836	6.80610272092859	6.35492390507302	0.261598871804234	0.351475159478162	0.739315814209263
Merged-chr17-56276268-3	chr17	56275741	56276741	+	889.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	526.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	7.71710148475486	7.50629828009905	7.19837482731405	7.70013164114276	7.57738345722311	7.21775363316306	0.0315803349677947	0.907102728351938	0.978868492078838
Merged-chr16-70315377-2	chr16	70314877	70315877	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	1428.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.11076609057247	5.30773872863424	5.19343755158682	5.33355901829527	5.69473665283337	5.15410682405121	0.439855322062676	0.236952895313781	0.633412320506677
Merged-chr11-78044856-3	chr11	78044337	78045337	+	760.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284228, intron 1 of 11)	intron (NM_001284228, intron 1 of 11)	4530.0	NM_001284228	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	3.21934315251448	3.16366494608898	3.37891046914482	3.11527898542217	3.072520045899	3.34278027314539	-0.323702087495878	0.612785022288836	0.88695907134847
Merged-chr13-24800083-4	chr13	24799577	24800577	+	967.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1580.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	7.91298683149531	8.14221752162893	8.00065743612125	7.99525244885862	8.46135663594504	8.24757007123895	0.323642139016909	0.17131771101045	0.54932102877065
Merged-chr11-79259026-4	chr11	79258536	79259536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4341.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.55589018077614	7.25351381326546	7.27226585973048	7.29851686451893	7.52452219089504	7.02078329454556	-0.0923543220602448	0.72717769857655	0.930115108449853
Merged-chr2-75792577-4	chr2	75792063	75793063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39614.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.84176713802962	6.71967708581699	6.65858743056867	7.05259954445982	7.17885608737368	6.90567898748543	0.479421319939285	0.0573741586739937	0.30913611312217
Merged-chr4-155560879-2	chr4	155560379	155561379	+	908.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1502.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	5.01392251480341	4.98715293230647	5.27565905317171	4.99043858714198	4.8004028211833	5.55377375141699	0.104360335707317	0.804277442554641	0.953639350937323
Merged-chr7-120918253-2	chr7	120917753	120918753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	CpG	509.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	7.27435924513314	7.54165849711963	7.24329465361116	7.31869875103612	7.07244945401581	6.97760917504063	-0.346839051829886	0.172254418339616	0.550849140713641
Merged-chr7-54861421-1	chr7	54860921	54861921	+	831.75	f0_balb.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	26176.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	2.69218667651764	2.87674439594536	2.82935858628385	2.38183302191677	2.41747313578822	2.46129608542672	-2.45217306536362	0.00476525681389956	1
Merged-chr19-46524343-4	chr19	46523835	46524835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22687.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.30291110992315	7.92192455984556	7.46788198209017	7.77993438518349	8.04706057099912	7.45793526022538	-0.227128402742091	0.453296007996075	0.809745581877009
Merged-chr7-126174266-2	chr7	126173766	126174766	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	26235.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	3.30864042606221	3.53249545742544	3.58865650872906	3.1791352951677	3.46851534700091	3.448881448133	-0.396944108624881	0.51911561126803	0.845629761325035
Merged-chr16-32878959-2	chr16	32878504	32879504	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356387, intron 1 of 7)	RMER21A|LTR|ERV1	1220.0	NM_001159349	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	3.57759921842643	3.58735549312029	3.51389603481233	3.44595875861847	3.77222598646265	3.69177874651889	0.297413336530791	0.600663973419754	0.881777807383619
Merged-chr14-75184099-2	chr14	75183599	75184599	+	752.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	RMER1B|Other|Other	47674.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.03093006086517	5.00428271985022	5.13590291998297	5.2300016255301	5.14755054643052	5.26390415446128	0.327620392136527	0.357500044563042	0.744062225368359
Merged-chr17-35219764-4	chr17	35219289	35220289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010909)	TTS (NM_010909)	-14438.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	6.32429444459813	5.90454781896308	6.23957829775782	6.25291912749388	6.10584312980202	6.01915296075762	-0.0561703850618504	0.853467125454153	0.965687837146459
Merged-chr4-3812691-4	chr4	3812178	3813178	+	940.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	22977.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.49438775265253	4.21629885810483	4.99692476391146	4.83842453054945	4.90236345359785	5.21300537485429	0.889010017181468	0.0566462058067539	0.306868720618053
Merged-chr15-36684314-3	chr15	36683821	36684821	+	794.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-75348.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	3.70354259624279	3.58607504630688	3.79141591553447	3.96752345330843	3.94176548683538	3.96020760422193	0.854630925779871	0.100209322567405	0.422124098222477
Merged-chr17-44103961-4	chr17	44103482	44104482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	1826.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	5.98121775668008	6.10326464537212	6.07610978089528	6.32313297218596	6.41070990047409	6.28454026615017	0.489117094757806	0.0784030014971302	0.369765882015731
Merged-chr14-60251495-4	chr14	60251004	60252004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-25.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	8.37089338897175	8.72168792019166	8.33876002096213	8.31280357227679	8.49999007492673	8.01038404055202	-0.27272390125094	0.27036007737638	0.667299602638099
Merged-chr18-65582245-4	chr18	65581737	65582737	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-181.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	6.60905117383304	6.52142587568804	6.370730251066	6.64285235642628	6.38210676780231	6.15563776099112	-0.151068571031706	0.601045279702045	0.881855262262798
Merged-chr7-28171342-2	chr7	28170842	28171842	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007991, intron 1 of 8)	intron (NM_007991, intron 1 of 8)	1594.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	3.42640542662365	3.36418059812162	3.4296540405359	3.26235895462708	3.39664618018324	3.21421260420207	-0.416538020759478	0.493606440571046	0.831444239973949
Merged-chr3-104524658-1	chr3	104524158	104525158	+	700.0	f0_balb.idr	Intergenic	Lx5c|LINE|L1	-12740.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.4660593210079	4.20349400955999	4.13483515169001	3.9863586056768	3.91337895287158	3.90082414819158	-1.00307775328015	0.0422214890459284	0.257393630341681
Merged-chr10-121264067-1	chr10	121263567	121264567	+	997.5	f0_balb.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	47329.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.80026116282263	6.28731180889794	5.66870018682123	4.6472597759537	4.68786634392766	4.87507677444462	-2.4744228980126	2.273309277042e-10	2.79405492354668e-08
Merged-chr2-32609627-2	chr2	32609127	32610127	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 2 of 5)	intron (NM_001025310, intron 2 of 5)	2642.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	4.5938984345649	4.1424767570378	4.21890412861831	4.02717353526246	3.8970321371796	4.45767926858472	-0.539346629284655	0.299868486215316	0.696598369608421
Merged-chr11-3188472-2	chr11	3187968	3188968	+	972.916626	f0_balb.idr|f0_c57.idr	intron (NM_030207, intron 2 of 32)	intron (NM_030207, intron 2 of 32)	4995.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.52223556151846	6.97834387222554	6.71241813185144	6.69242998869332	6.36826554943776	7.15577377834764	0.0266860911992191	0.934261731790884	0.985707838096286
Merged-chr2-157099644-3	chr2	157099126	157100126	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018851, intron 15 of 15)	intron (NM_018851, intron 15 of 15)	12571.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	3.15715962665346	3.18139054207156	3.31173764404607	3.29380649203183	2.8751271035141	2.97081743985894	-0.680700365506834	0.322386844855583	0.715872240252544
Merged-chr4-140990881-2	chr4	140990381	140991381	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	B4A|SINE|B4	4008.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	3.5464145260763	3.57343335132325	3.7289685787621	3.26465399598464	3.20105214110573	3.548148319593	-1.05667292596811	0.0816016219714247	0.377825817205404
Merged-chr4-131838298-4	chr4	131837780	131838780	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011214)	promoter-TSS (NM_011214)	-2.0	NM_001083119	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	2.60945461953255	2.82881035621497	2.70682155313802	2.63884575037351	2.46699945561531	2.78011937864551	-0.496518243210971	0.52253143063863	1
Merged-chr15-32920794-4	chr15	32920325	32921325	+	965.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008304, exon 1 of 5)	5' UTR (NM_008304, exon 1 of 5)	102.0	NM_008304	15529.0	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	3.40854590981966	3.56199385062909	3.78870168352712	3.61381950235972	3.43751477104959	3.55737548383763	-0.190608611276035	0.742768201480903	0.935365213905758
Merged-chr2-91485021-5	chr2	91484560	91485560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 16 of 37)	L1_Rod|LINE|L1	27529.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	8.25515741203034	8.411239107021	7.87026525006624	8.21001707950371	8.56789539242844	7.81233398526862	0.054069998621189	0.849572565959978	0.964686793473289
Merged-chr13-60679102-2	chr13	60678602	60679602	+	612.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	76891.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.99249672796595	3.91802627980133	4.2179622704958	3.86710607880037	3.91054786350397	4.28316821821563	-0.0522135846108722	0.919364791541168	0.982021663622864
Merged-chr8-11556949-3	chr8	11556524	11557524	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011919, exon 1 of 2)	exon (NM_011919, exon 1 of 2)	567.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	6.78611689662129	6.72040597143867	6.95233860078465	7.05928370873001	6.85412756466102	7.10057762287671	0.286940142501082	0.257841171636605	0.655300508619143
Merged-chr12-86146421-3	chr12	86145925	86146925	+	615.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	L1MA6|LINE|L1	-22916.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	4.1260526901998	4.30457690774141	4.58971948856573	4.52718576512573	4.51373178209876	4.7295680479162	0.620314898259482	0.171101201240905	0.549054232994131
Merged-chr5-16356048-4	chr5	16355555	16356555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110843, intron 29 of 38)	intron (NM_001110843, intron 29 of 38)	-197440.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.87098778251726	3.84066004384283	3.77998762221059	3.75317375874732	3.71066823565786	3.89941900099981	-0.161077618058952	0.757299348197868	0.939861209437025
Merged-chr13-40968786-4	chr13	40968294	40969294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155347, intron 1 of 4)	LTR41|LTR|ERVL	-32216.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	6.69812640370142	6.65345336335448	6.51209612204792	6.30680529444998	6.29895828297212	5.92817724175979	-0.692501547006816	0.0155677099163498	0.136238747025624
Merged-chr11-96765386-2	chr11	96764886	96765886	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12169.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	6.01509574638811	5.42071257487248	5.68402785799947	5.50210145393388	5.84908738781758	6.21377359310481	0.265447387822549	0.480573663632912	0.824577865423721
Merged-chr8-60973656-4	chr8	60973159	60974159	+	822.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	MTC|LTR|ERVL-MaLR	9652.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	2.96572657040688	3.14769928932104	3.22260143708518	2.97059564592265	3.02947233380415	3.18279124184899	-0.235073798902082	0.723479900258782	0.929080239793919
Merged-chr1-88563281-2	chr1	88562781	88563781	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11764.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	2.90854861205105	2.83025557430025	3.05814253010499	2.9850448730169	2.6908782966975	2.83291017758423	-0.453193919266762	0.528850085926423	0.850585575598857
Merged-chr15-6407420-2	chr15	6406920	6407920	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	20672.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.5211676764897	4.49679097058245	4.70327742499521	4.32183612094243	4.28479638630488	4.17511652365469	-0.783861315599854	0.0778457818114332	0.368410409109642
Merged-chr16-49855015-2	chr16	49854515	49855515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-639.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.46804216105012	8.53503718445739	8.49355685864104	8.42748968981723	8.75877907959434	7.91866790908861	-0.104088814215252	0.699159624941317	0.920515737149593
Merged-chr12-82220894-3	chr12	82220398	82221398	+	857.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	50882.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	2.97240438843721	2.74322138029424	2.72847297009337	3.03733113989756	2.63523096743397	2.99002431322431	0.367914885254014	0.62719990183022	0.893065171577749
Merged-chr15-96568498-4	chr15	96568000	96569000	+	967.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR37-int|LTR|ERV1	73462.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.5354361835927	5.56807539421007	5.23366964831186	5.18553251795257	5.3912185418163	5.70268055098134	-0.0548235421793332	0.880002295218362	0.972364498183256
Merged-chr2-136678858-3	chr2	136678348	136679348	+	890.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34602.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	4.12746030549899	4.45021163948035	4.38677113807605	3.74378789488808	3.16914625795304	3.6395494790564	-2.66777700179647	3.92627305736254e-05	0.00128976442383349
Merged-chr16-36827879-1	chr16	36827379	36828379	+	962.0	f0_balb.idr	promoter-TSS (NM_177128)	promoter-TSS (NM_177128)	380.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	3.84347606210648	3.82979060748653	3.70036743575946	3.74902679879195	3.59884953405072	3.4895971701532	-0.59352713358572	0.281969801062316	0.679908771156903
Merged-chr1-93722955-2	chr1	93722455	93723455	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025920, intron 3 of 5)	MTD|LTR|ERVL-MaLR	8971.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	3.85624143955433	3.90481495718023	4.04572483133561	4.06809475357737	4.05296067684497	3.91897288255654	0.262368478161202	0.597509623777529	0.880433364120803
Merged-chr18-5760478-3	chr18	5759958	5760958	+	905.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360982, intron 4 of 7)	intron (NM_001360982, intron 4 of 7)	167811.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.97272892489254	2.94640780407843	2.94898769842381	2.66322798733739	2.72197818072061	3.0780890478604	-0.636544748893441	0.386776765685012	0.767209905576392
Merged-chr2-39065572-4	chr2	39065076	39066076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029793)	promoter-TSS (NM_029793)	-35.0	NM_029793	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	7.48994502150878	7.75478728743916	7.21103535059732	7.4524238820591	7.68899114986643	7.11093240968274	-0.0921337018762215	0.744235699410583	0.935908101256887
Merged-chr10-79958323-4	chr10	79957826	79958826	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1826.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	3.53416383101233	3.30837403584224	3.74285436708933	3.3707309239798	3.52192460496743	3.50847832879518	-0.2308745481136	0.700123334681724	0.92088373406885
Merged-chr5-120520834-2	chr5	120520334	120521334	+	669.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_133221, exon 6 of 16)	exon (NM_133221, exon 6 of 16)	9642.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	2.98421150348437	3.26775913085344	3.51904324648077	3.36589420603844	3.17081238110159	3.63756993087778	0.502696482579512	0.457262245088132	0.812185298776444
Merged-chr3-152928802-3	chr3	152928292	152929292	+	937.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	53415.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	3.04003417589031	3.21568353303306	3.15050619278307	3.61798792448542	3.96363067641909	3.79165688010508	2.63755590268181	6.26518535924748e-05	0.00191237543423428
Merged-chr8-90795525-4	chr8	90795005	90796005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33330.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.00447415927599	5.31684015111293	5.44997839221038	5.21129496867988	5.1202088111013	5.2140398794829	-0.168791170630025	0.645860343257392	0.900771562468693
Merged-chr6-83645391-2	chr6	83644840	83645840	+	653.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_016751, exon 7 of 7)	exon (NM_016751, exon 7 of 7)	10776.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.46061069977736	4.48116939103253	5.01715992300725	4.77682830656972	4.54783312989905	5.25685108567288	0.49012246920552	0.301534171923438	0.698264927568891
Merged-chr6-29621065-2	chr6	29620565	29621565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11216.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	5.86565577366676	6.03051189868898	5.97735537526868	5.75137182818759	5.84860268394497	5.53990951924596	-0.405243519853139	0.193871067665587	0.581211465952526
Merged-chr13-24464595-4	chr13	24464108	24465108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 14 of 16)	RMER5|LTR|ERV1	49486.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.60426489305131	5.48637869302018	5.47412567086981	5.7516518249097	5.8318112424264	5.38009867622442	0.293521108385043	0.383833517580422	0.765036051179388
Merged-chr12-111417587-4	chr12	111417090	111418090	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028807, exon 1 of 13)	5' UTR (NM_028807, exon 1 of 13)	145.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	3.54485481088735	3.42628864018073	3.62855941702846	3.99037202803082	3.48697994947349	3.99375501868242	1.03155601260602	0.0787799770124668	0.370868463259694
Merged-chr15-8992793-2	chr15	8992293	8993293	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	24844.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	4.97502381798033	5.03637451901087	5.02284843770471	4.96694577133747	5.25103697567866	5.08756476003958	0.217727211659424	0.555835717276805	0.86343654183083
Merged-chr15-66536618-4	chr15	66536107	66537107	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172514, intron 7 of 9)	L1MC3|LINE|L1	24439.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	3.85148304444094	4.17172290989758	3.93136623262496	3.71874058009211	3.58102262377381	3.63340435214131	-1.14656828976959	0.0341733572667255	0.22621532327018
Merged-chr12-54862917-4	chr12	54862397	54863397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-20.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	7.57513869738604	7.53927016542741	7.38838085344765	7.81802897569355	7.57364890110956	7.27250168265598	0.108095405947454	0.669819162724133	0.909754874752292
Merged-chr16-21687525-4	chr16	21687031	21688031	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	7134.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.32702195082251	4.58551585152912	4.84066854497764	4.62726825772797	4.66186904966489	4.76182332738281	0.218907523379296	0.613272794683121	0.8871558188455
Merged-chr11-94388102-2	chr11	94387602	94388602	+	722.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4874.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.79651869118484	5.75786404178675	5.92859312127197	5.69879211040496	5.92380428919606	6.13959920250057	0.181401959070243	0.564166647429701	0.866201054824694
Merged-chr15-89196083-4	chr15	89195567	89196567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027081, intron 1 of 19)	CpG	407.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	6.78841721570811	7.06749303357359	7.14769744672244	6.96389939039994	6.94120437840925	7.29574735763726	0.0968381245574491	0.71595433187531	0.926518401339303
Merged-chr11-88954966-4	chr11	88954469	88955469	+	980.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	473.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	8.3995352498709	8.67780507116366	7.81847360939945	8.50051395865658	8.71020646462549	7.84719708012453	0.0779149977353984	0.809107521701486	0.954721853010197
Merged-chr12-85596091-4	chr12	85595599	85596599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3006.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.77406326633226	4.14146409794845	4.42048391579747	4.47055077222213	4.10546175668713	4.0586851290677	-0.644902235395346	0.207172467469259	0.597920729067479
Merged-chr6-117905482-4	chr6	117904985	117905985	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	-1297.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	5.93914156974023	6.08993957733381	6.2175892217273	6.31180839208193	6.39046116368531	6.41138207907281	0.488504909945209	0.0822011219365538	0.379123019025808
Merged-chr6-145245428-3	chr6	145244936	145245936	+	898.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 2 of 4)	(CAAA)n|Simple_repeat|Simple_repeat	4795.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	5.9706386519855	5.74176828296698	5.8729072909826	6.24676264816356	6.46635487750809	6.10095213624827	0.729432922900435	0.0152542858696442	0.134201587929938
Merged-chr19-34602102-4	chr19	34601599	34602599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101605)	promoter-TSS (NM_001101605)	-131.0	NM_001101605	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	5.37170801829915	5.6180310697789	5.4524704784046	6.15931240338478	6.63266824621862	6.39558374619487	1.61778230837948	4.85137915115773e-07	2.8609040142419e-05
Merged-chr17-50185911-3	chr17	50185452	50186452	+	822.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	4545.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.26105506949914	3.0982833556586	3.08332988857669	3.04788784292828	3.1060886983439	3.1556801559222	-0.218522643837389	0.735836789425509	0.932936187992169
Merged-chr19-10290570-7	chr19	10290045	10291045	+	994.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	14332.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	6.35283399925853	6.13355751103571	5.95606329421196	5.94512401001456	5.56044540459434	5.3533713618842	-0.903006576977536	0.00863736405052273	0.0910089638996955
Merged-chr19-11263162-4	chr19	11262682	11263682	+	797.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2969.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	4.97943803440438	4.9435550255664	4.938755629878	5.30933404189544	5.17605505994361	5.68566838466663	0.903855490394399	0.0169479123530713	0.144606428535106
Merged-chr6-82909476-4	chr6	82908941	82909941	+	894.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-27588.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	3.74470031698255	3.6841460512846	3.47250499272088	3.25607680697194	3.0665059948561	3.18820598897386	-1.94626981025769	0.00236927807436982	0.0351664092065936
Merged-chr11-3168096-1	chr11	3167596	3168596	+	1000.0	f1_balb.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25367.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.13843217577435	6.61903105644999	6.70394000687517	4.8322212966248	4.71468421295966	7.30481776442816	-0.347328765293464	1	1
Merged-chr3-105825836-4	chr3	105825322	105826322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10255.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	6.67392241550932	6.28674522266411	6.34636290481997	6.88700012388251	6.9016986886722	6.66308831508556	0.593143160670407	0.0333525676504507	0.222874250458133
Merged-chr7-98816238-4	chr7	98815744	98816744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-18868.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	7.30514028101275	6.9494229039674	6.89097379819044	6.74543202446991	6.94846203913129	6.30631862270137	-0.550849823656753	0.0692023039172387	0.344183222017071
Merged-chr5-32862588-2	chr5	32862088	32863088	+	963.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-1133.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	2.31191356337923	2.31568244354708	2.64669019404262	2.36045145544218	2.39101918169595	2.34656227812724	-0.385309218183974	0.646764849533172	1
Merged-chr14-64883281-4	chr14	64882812	64883812	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	L1MC1|LINE|L1	66545.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.41259986605352	5.61378503543045	5.72922463831372	5.48040709540348	5.38491023688478	5.74121929687609	-0.0993453833166735	0.770050167396058	0.943310056383255
Merged-chr9-59659927-4	chr9	59659419	59660419	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3551.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	5.66247059197442	5.72501482842511	6.08117102677781	5.50852782042149	5.6300854799185	5.88308749390904	-0.271792997924872	0.417783608957745	0.788328494227065
Merged-chr1-72415787-4	chr1	72415286	72416286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	108365.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	4.24219250151032	4.49859869713417	4.11975683588303	4.31462966035557	4.30938483498967	3.80620159362289	-0.346659201622991	0.509197170632002	0.84026015734467
Merged-chr7-66386591-1	chr7	66386091	66387091	+	554.0	f1_balb.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	1750.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	3.24026544064768	3.37595901895862	3.56016478965031	3.54437757634554	3.59381868338916	3.7792310624391	0.904770698657216	0.124481982197726	0.472098928006171
Merged-chr16-31756612-3	chr16	31756111	31757111	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	2261.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	5.51614967217926	5.24574709799897	5.08788049195453	5.35233845049316	5.39494025471764	5.18921435981466	0.0321624755128921	0.929244629118953	0.983987942057929
Merged-chr9-95567176-4	chr9	95566673	95567673	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7356.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.17698218486493	6.03878358734494	6.19923114487579	5.99092058577576	6.00416103050502	6.15687929209807	-0.153621877681982	0.592642944532253	0.878142077122388
Merged-chr19-41983672-2	chr19	41983172	41984172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	1909.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.38293182921207	4.58231517639524	4.27929880486418	4.3302875798198	4.44963022008349	4.25318472927527	-0.192906270829313	0.670062695726247	0.909877715716983
Merged-chr9-110527881-4	chr9	110527380	110528380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4717.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	6.02418797553467	5.89728599040109	6.05588807706549	5.83895486309225	5.90603588552645	6.0287464164785	-0.119383283069335	0.686221551013202	0.916610846457002
Merged-chr14-63103228-4	chr14	63102729	63103729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19233.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.20441748915454	8.49491973403101	8.04594711008811	8.2649435116411	8.66775233510876	7.96166841681572	0.10256386949628	0.707240062573625	0.923295611913498
Merged-chr10-60733921-4	chr10	60733401	60734401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18881.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	7.00810106809685	6.99621997390502	6.9627470592016	7.16795762538893	7.34144153551661	6.60291082530466	0.150121921493318	0.603283117245847	0.882544198306255
Merged-chr9-118850833-2	chr9	118850286	118851286	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 23 of 28)	exon (NM_133721, exon 23 of 28)	-75750.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.98005175166909	2.90061561782959	3.02188658731101	2.88407777016988	2.87139208601107	3.2050882233371	0.103816123304565	0.880654318613642	0.972570649423004
Merged-chr10-127603170-2	chr10	127602664	127603664	+	993.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17984.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.5320247888534	7.3447207629739	7.81434764525445	7.74678912716772	7.88471477886514	7.60045625972094	0.265303772851997	0.285439565474728	0.682933641197479
Merged-chr11-5732880-4	chr11	5732410	5733410	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	8266.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	4.77635878791902	4.78521920104487	4.6397213171453	5.24716790610543	5.32394628360406	4.91499364585628	0.960173643084455	0.0141028576407474	0.127468018528276
Merged-chr16-10974075-1	chr16	10973575	10974575	+	543.0	f1_balb.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	19046.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.60634085574381	4.60945908106655	5.18171213748888	4.56503724324891	4.51068525905013	5.21554191458751	-0.0534173233881997	0.911831390026978	0.980203430072926
Merged-chr8-75063641-4	chr8	75063139	75064139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29953.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	6.79158793862423	6.47770370053287	6.57811813166001	6.6584406516668	6.76360012177648	6.60289467680158	0.0902898387766304	0.734925270855045	0.932617455907478
Merged-chr11-54755672-3	chr11	54755087	54756087	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 2 of 5)	intron (NM_178626, intron 2 of 5)	32116.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.41791176429342	6.47081397408955	6.30031860634202	6.13010682315756	6.20226617912512	6.43547055778101	-0.246185275410357	0.378746978459396	0.761238278986952
Merged-chr4-155235128-4	chr4	155234610	155235610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12575.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.34509643959726	7.4831585571931	7.43975144780179	7.30726122648504	7.48645195297699	7.53665207983908	0.0326591836889415	0.887159978840058	0.973824354172309
Merged-chr4-145286934-4	chr4	145286440	145287440	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 8 of 12)	intron (NM_009401, intron 8 of 12)	28207.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	2.99217563772334	2.85819001165972	2.94137954384694	2.85532348627135	2.94424641328773	2.69761614600806	-0.434254679285931	0.547732321889455	0.859437236400189
Merged-chr2-3658652-2	chr2	3658152	3659152	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54806.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.76674756130973	5.54456878473514	5.99330230869145	5.69087542233704	5.70375903270652	5.96651161050303	0.0272066844178565	0.934133492607538	0.985707838096286
Merged-chr13-45031931-4	chr13	45031435	45032435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29839.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.68751083076553	6.84591938583647	6.45363745518375	6.54222735078255	6.70653050055866	6.1053528287834	-0.300831599173603	0.325377440167575	0.718124347934101
Merged-chr9-99376922-2	chr9	99376421	99377421	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-18391.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.06432523030007	2.87220153730176	3.01521766533596	2.86991083363077	2.73394270793846	2.84675559952166	-0.84765052489744	0.230314661569962	0.626192360633515
Merged-chr4-74305406-4	chr4	74304877	74305877	+	822.62915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 4 of 20)	B1_Mus1|SINE|Alu	53498.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	4.24933875306974	4.39035265515528	4.39054550267128	4.46683942974382	4.3951440305618	4.58094468982196	0.343977323823651	0.431813121417886	0.797102108819786
Merged-chr4-48473463-4	chr4	48472959	48473959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355741)	promoter-TSS (NM_001355741)	4.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	6.76380698437248	7.00737682333746	6.4856933801507	6.93133186104987	6.81641041268282	6.63653164722481	0.0364158199519347	0.896928095586535	0.97587199430405
Merged-chr1-32249778-4	chr1	32249264	32250264	+	841.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133235, intron 2 of 8)	Lx6|LINE|L1	77042.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	3.69348682803058	3.57854131242086	3.8001624106616	3.98575473329536	3.78066272488885	3.76742737061064	0.532996543707998	0.319446045444171	0.713473803498015
Merged-chr9-41445309-1	chr9	41444809	41445809	+	888.0	f0_balb.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-29584.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	2.7473126899523	2.73317656375377	3.12217512772993	2.5521051846597	2.48954539929299	2.91971338197067	-1.11726946600211	0.167479418057114	0.543354082120217
Merged-chr15-57890640-4	chr15	57890186	57891186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	L2a|LINE|L2	1732.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	5.75340492231858	5.61044826389106	5.83559428077497	5.92833210104699	6.06824761614662	6.07991831728919	0.527163875654505	0.0805088763958971	0.375501302907505
Merged-chr19-9993217-4	chr19	9992734	9993734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011913, exon 3 of 12)	exon (NM_011913, exon 3 of 12)	8399.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	3.3857762370245	3.32615788193312	3.21433784032673	3.31599628218821	3.38862334403665	3.56384765206756	0.416263786032168	0.492968222453291	0.831208279358962
Merged-chr10-88346110-4	chr10	88345590	88346590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	10985.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.42660693366055	6.30927385363867	6.86142365412022	6.67200440895398	6.84567582044264	6.49446623195419	0.228207845588832	0.441870576666196	0.802999352423289
Merged-chr16-31234208-4	chr16	31233717	31234717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER112|DNA|hAT-Charlie	-32979.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	8.09783121455681	8.00350492914728	7.75578874497049	8.0848862716	8.16847444665202	7.82958675982608	0.107140767522872	0.647915208409442	0.901578606359806
Merged-chr10-68714505-4	chr10	68713987	68714987	+	742.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12B|LTR|ERVK	-9259.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	2.73546828987478	2.76912074984814	2.79331153880279	3.17844178897409	2.88780061034713	3.2231788494902	1.63932998080848	0.0235336552892324	0.179832344691729
Merged-chr12-86833318-3	chr12	86832828	86833828	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	51486.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.36507350786413	6.20893511174222	6.19413121867805	5.98146016102309	5.63326240065448	5.84318510311376	-0.761351542669528	0.0116052098880065	0.111674141825054
Merged-chr13-63250256-3	chr13	63249758	63250758	+	751.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	10229.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.22916261585461	3.14590888123987	3.19418495053951	3.05205814471781	3.19835347096841	3.32115443624569	0.00870606395032268	0.989081486979618	0.997508825363283
Merged-chr5-101938345-4	chr5	101937848	101938848	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	B3|SINE|B2	131573.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.6453860115938	4.26930415453658	4.40989716632239	4.63174994134137	4.4948905337982	4.60433945085979	0.30070627386333	0.494186721029966	0.831821998694449
Merged-chr5-135616234-4	chr5	135615753	135616753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16401.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.76181766750672	4.75871406004384	4.99861159714286	3.97611925376371	4.03049987634434	4.31067556322981	-1.91871598043631	3.46109054265993e-05	0.00116218895025685
Merged-chr13-26234905-4	chr13	26234416	26235416	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77490.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	3.38759072973221	3.39903236634273	3.24977216765066	3.25015138730327	3.38429669832551	3.32178193568382	-0.115283463655679	0.849510279890663	0.964686793473289
Merged-chr6-38941203-4	chr6	38940699	38941699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	22213.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.52877914856208	7.28169915745789	7.07160780480019	7.25919948124114	7.48706205791611	7.21842144465821	0.0262654788237368	0.918878552862376	0.981844538421417
Merged-chr12-70969207-4	chr12	70968714	70969714	+	919.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5409.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	7.24061423117813	7.5282249080456	7.23644252212961	7.52464606739184	8.05077355198743	7.56740829068226	0.581509096840216	0.0303721107790329	0.210547579247002
Merged-chr7-127016140-3	chr7	127015638	127016638	+	828.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030240, intron 2 of 2)	intron (NM_030240, intron 2 of 2)	1214.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	5.10416380621907	5.42762866861755	5.90688732331003	5.56719862712745	5.41337401341757	5.63849441364656	0.0536705087167486	0.888996760585863	0.974207858658472
Merged-chr17-3113783-2	chr17	3113283	3114283	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1189.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	4.86789066541071	5.41216887809044	4.86720949417127	4.96158425503256	4.64875851921107	4.73309497510189	-0.653249106783371	0.124675126102749	0.472306664538883
Merged-chr4-105268891-4	chr4	105268398	105269398	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111551.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.79472454916392	4.22697489289928	4.46566291267589	4.97465834034663	4.62800822148539	4.48953913637521	0.46441210709658	0.323967917617887	0.717249509633878
Merged-chr17-64592485-4	chr17	64591979	64592979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9170.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	6.73607996693643	6.95205828158569	6.80755630215962	6.69943626865296	6.43387427334092	6.42758290317126	-0.488113405697376	0.0669250037468287	0.338131988084651
Merged-chr5-88509242-4	chr5	88508733	88509733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18664.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	6.52879482771229	6.45078375515709	6.50929881045502	6.72781936716549	6.92440391204197	6.75167988963564	0.496904563181865	0.0531256468551153	0.295407566394041
Merged-chr7-45276883-2	chr7	45276383	45277383	+	676.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5990.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	5.13994397350686	5.1758304924655	4.8054631495728	5.27710290575775	5.23212378375385	4.83160503787501	0.161531633054269	0.683760809469254	0.915479407206029
Merged-chr15-100060614-4	chr15	100060125	100061125	+	898.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	21961.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.82396895488418	5.71059695902007	5.56786956132071	5.64486066574369	5.79806183556442	5.74084292551619	0.0351161756772165	0.911180164754335	0.980026994912141
Merged-chr10-117214811-2	chr10	117214311	117215311	+	868.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026570)	TTS (NM_026570)	9696.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	5.10571341021071	5.42258101152248	5.55847633929343	5.22098328337254	5.18032892261038	5.4577117954364	-0.16879471979817	0.64398208432922	0.900016543869792
Merged-chr5-90895489-2	chr5	90894989	90895989	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	4244.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.21567475764137	2.95511884747592	3.20562312226941	3.05165360205539	3.03794432025279	3.3309491926821	0.0528691663697096	0.936813763156475	0.986037792257163
Merged-chr15-95963243-4	chr15	95962746	95963746	+	971.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 17 of 19)	MIRc|SINE|MIR	116307.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	4.11545621929578	4.27703086325077	4.2513869437184	3.89985046523284	3.99782641345433	3.94176714258043	-0.772680067924438	0.112081887375023	0.447159670482948
Merged-chr17-70990608-4	chr17	70990148	70991148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-132.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	8.07224132111028	8.1024051356864	8.22584716777896	8.17011727419739	8.20460714085762	8.17219791411171	0.0718306141394134	0.726785143930713	0.930031038634762
Merged-chr7-111079863-3	chr7	111079370	111080370	+	843.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 4 of 21)	intron (NM_013507, intron 4 of 21)	3160.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	3.65121822079739	3.60740954995141	3.41493001898138	3.62518832711146	3.43156755885038	4.03896651358852	0.507690218965651	0.402548631942105	0.778091120763767
Merged-chr5-33352158-4	chr5	33351658	33352658	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021500, intron 1 of 8)	ID_B1|SINE|B4	16586.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	7.09163840246116	7.58554648422722	7.28829618256929	7.47758497441927	7.4636413311383	6.90632135629252	-0.034528490318982	0.904795864876291	0.978165789675139
Merged-chr11-83580987-4	chr11	83580491	83581491	+	798.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1070.0	NR_036453	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	4.66745217682654	4.32162500264808	4.71365524695796	4.33553883015698	4.39252329014891	4.50905906961129	-0.410057803485232	0.358084806112415	0.74454984718519
Merged-chr2-72853407-4	chr2	72852907	72853907	+	882.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39690.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	5.33142958999009	4.95739618906873	4.50633842206558	5.51678634805645	5.32835229189967	5.16646845719223	0.730181121064222	0.0975179621615348	0.416374769100618
Merged-chr15-80260836-4	chr15	80260346	80261346	+	839.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175109, exon 4 of 4)	3' UTR (NM_175109, exon 4 of 4)	3460.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	2.62210318727329	2.65178557499685	3.03952312773022	2.68920903183854	2.76250748337889	2.63833500312726	-0.410478796405559	0.59437193073254	0.879039131427841
Merged-chr6-90710683-1	chr6	90710183	90711183	+	719.0	f0_balb.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	5846.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	3.39394892544582	3.196267767699	3.36463419149864	3.14887758867235	2.93036423809593	3.53846600756593	-0.386306715688478	0.572266226081308	0.869807909725036
Merged-chr3-65956617-3	chr3	65956112	65957112	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	1637.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.53649785084764	6.74108508395995	6.47826580547349	6.71874907606044	7.00582968513458	7.05516297514795	0.526070177932265	0.0502212060129774	0.285205384202362
Merged-chr9-104235793-2	chr9	104235293	104236293	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	27137.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.57783602075939	4.95243638795386	5.16010595035507	5.38040280888794	5.14481992288687	5.15922447389687	0.682942192356497	0.0882354786467254	0.394284730900624
Merged-chr16-87702856-2	chr16	87702356	87703356	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	3902.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.24646838500499	3.2504275407105	3.52116029573325	3.25022149462162	3.3019724835511	3.43615799059923	-0.0395662133790431	0.94866171124591	0.988151190239158
Merged-chr5-62753382-2	chr5	62752882	62753882	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	12795.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.1492806391816	6.22851602412087	5.42360136678547	5.75299492289942	5.90907232720508	5.34957870822564	-0.513178923179836	0.188073802765162	0.573505514731689
Merged-chr11-96890746-2	chr11	96890257	96891257	+	919.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	25757.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	6.18937205446771	6.3075747584951	6.06115708154114	6.58902566185977	7.11906772689909	6.32489538255695	0.872063557444333	0.00732547512158914	0.0808084494123279
Merged-chr12-35067839-3	chr12	35067338	35068338	+	795.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	20649.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.43419361982483	4.77351316034168	4.51555882979762	4.54330681426653	4.51124070589984	4.45267117048921	-0.204902386623911	0.635511186449967	0.896573254953858
Merged-chr19-46573256-4	chr19	46572735	46573735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019718)	promoter-TSS (NM_019718)	-53.0	NM_019718	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	5.61196238547696	5.52520462475197	5.38678947988776	5.4413812065	5.61655765742329	5.28803374392974	-0.0943215645831561	0.781651309736322	0.946262489478465
Merged-chr2-90497132-2	chr2	90496631	90497631	+	602.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17957.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.33205534568904	4.69395677595478	4.6734903115968	4.60616452667741	4.54383724053003	4.73891312707273	0.125174855547003	0.77153496330687	0.943614978016208
Merged-chr7-106240703-1	chr7	106240203	106241203	+	577.333313	f0_balb.idr	Intergenic	RLTR13B2|LTR|ERVK	-25363.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	3.63318924292231	3.69044339935564	3.98057485027782	4.19883999397875	4.28673287867869	3.89933380378477	1.1595358858589	0.0285201779831598	0.202279322785198
Merged-chr5-3430694-4	chr5	3430207	3431207	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	86814.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.03855297655898	5.94452952148406	5.58113220663615	6.07203838248199	6.00847878062762	5.51993267198928	0.0373999066028511	0.914025306861321	0.980851155332372
Merged-chr1-37998854-2	chr1	37998354	37999354	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	844.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.44499955500401	6.73321337852501	6.96879771747663	6.71015226574205	6.89376042073614	7.13747355527741	0.303274499043421	0.291314848855149	0.689020066615668
Merged-chr14-56885405-4	chr14	56884894	56885894	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1209.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	6.62131570821491	6.78901124299463	6.68316326717835	6.92674247685052	6.94692659787758	6.74192165263798	0.281121550532956	0.267479675239942	0.664728774188073
Merged-chr3-105900892-4	chr3	105900384	105901384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3537.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	6.08677720963391	6.00648280268665	5.5624444348337	5.67463166788497	5.89316887127786	5.68294995244266	-0.281260355041299	0.398995795106399	0.775565728016755
Merged-chr15-34181823-4	chr15	34181317	34182317	+	961.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56209.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	3.25643613497853	3.11709080633884	3.24986006188693	3.30000780981779	3.00234309944931	3.20726628199878	-0.152565350416364	0.813397316487507	0.955940138311315
Merged-chr6-129362498-2	chr6	129361998	129362998	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	MLTR11A|LTR|ERVK	12254.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	5.2475826516482	5.05443612588186	5.38640715222052	4.80163040843224	5.05183831282509	5.36379810898978	-0.301538338404692	0.440696592947389	0.80190131151537
Merged-chr12-3811819-2	chr12	3811319	3812319	+	615.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	4659.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.49044146774103	4.54937256717882	4.94329274914308	5.01049239054113	5.03443597240485	4.78877496243862	0.665845042211751	0.108636969453327	0.440348058957154
Merged-chr8-123248751-4	chr8	123248234	123249234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028200, intron 5 of 14)	intron (NM_028200, intron 5 of 14)	-5461.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	5.06546828618326	4.73295514909096	5.22617465951542	4.78665326768269	4.99853165106622	5.28881502827266	0.0379975127812261	0.926388762142123	0.983464398886459
Merged-chr1-191956554-2	chr1	191956054	191957054	+	771.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20816.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	4.62917874968354	4.69368770895138	4.91265906008205	4.08855436779774	4.07196021598991	3.91400376658282	-1.88540721101195	8.47203482385912e-05	0.00247001076952933
Merged-chr9-96716097-3	chr9	96715629	96716629	+	845.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	3316.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	3.79436996967496	3.86672645753092	4.27278911639473	3.72495700083495	3.83515069639282	3.79704045214121	-0.611690202566322	0.257835866203425	0.655300508619143
Merged-chr1-155058734-4	chr1	155058224	155059224	+	932.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24540.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	5.16673723394176	5.31641339683636	5.27819854307298	5.14620323188017	5.23045919746683	5.18040083084693	-0.134900074042883	0.699363023846849	0.920603734905492
Merged-chr13-54590139-4	chr13	54589616	54590616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	-42.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	7.34201584416336	7.44610821277659	7.32661124681658	7.36532033243234	7.45304481354513	7.35036353346996	0.0269354983574205	0.905299956167864	0.978279198518346
Merged-chr15-25637937-4	chr15	25637416	25638416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	15366.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.08624807367697	5.98342830867475	6.02119081028221	5.74448963254135	6.10705628508024	5.9186901115965	-0.158077995661229	0.603366080020956	0.882544198306255
Merged-chr6-92940984-3	chr6	92940481	92941481	+	951.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	399.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	4.85451614046334	5.10002058390032	4.47504073058719	3.48550426044273	3.29972042053356	3.6543190682303	-5.29659639952202	1.70918145858512e-10	2.16795077448096e-08
Merged-chr6-4904217-3	chr6	4903713	4904713	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 1 of 15)	intron (NM_181595, intron 1 of 15)	893.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	5.41705160899006	6.10983264497804	5.33843506791251	5.52328183555073	5.66617367029558	5.37023685340564	-0.28367323144809	0.469542196199001	0.818977178978635
Merged-chr8-70003266-4	chr8	70002770	70003770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6886.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	7.23696499085769	7.02013989225708	6.98558880596446	7.49519065449746	7.64274985009814	7.21577489922573	0.56801345638912	0.0255389988199062	0.1894562179423
Merged-chr12-59219006-4	chr12	59218539	59219539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033156, exon 1 of 4)	exon (NM_001033156, exon 1 of 4)	444.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	7.66003175959201	7.59531636683956	7.63407276069828	7.67721540878318	7.54425931444338	7.57770676734613	-0.0427832586041116	0.84476759709279	0.96373428957366
Merged-chr11-115707439-4	chr11	115706954	115707954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	1143.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	8.05515763186432	7.91706360348863	7.91722098223052	8.12721819958323	8.39381993057144	8.06400877354373	0.343429769877951	0.124402823549772	0.471972922758045
Merged-chr2-32505681-2	chr2	32505181	32506181	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-29678.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	4.17152417832228	3.80257345660639	4.59036349317005	4.00566169570951	4.10079622700488	4.13245259841248	-0.387483248864163	0.47149293236494	0.82003227114715
Merged-chr19-37127155-4	chr19	37126590	37127590	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	B1_Mur1|SINE|Alu	-46753.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.83605041237223	3.63814466602336	3.7417710466238	4.05204647424785	4.18888336284353	3.96941372857335	1.04847691001516	0.0422644934357852	0.257561444983508
Merged-chr10-80940671-7	chr10	80940136	80941136	+	951.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10545.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.9552374313373	4.8076514521684	4.65062339526379	4.95927618281152	4.59723584752329	4.54392437396774	-0.230644746268439	0.585264907946847	0.874932131880008
Merged-chr11-31735302-4	chr11	31734794	31735794	+	732.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63432.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	3.36877612547346	3.51735421365343	3.06731221099231	3.45173370972451	3.26350729224579	3.38689644956273	0.113032107577386	0.861808314554623	0.967996224966109
Merged-chr4-133346327-4	chr4	133345755	133346755	+	660.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6940.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	2.81487601639315	2.85250994161297	2.78050089129378	3.52914374981556	3.36709561980361	3.18610988676202	2.65174526880433	0.000385465872068389	0.00854914061738875
Merged-chr1-92775500-3	chr1	92774997	92775997	+	798.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56148.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	3.24214810479803	3.45507161824742	3.28895588419419	3.12474393664161	2.90422502370491	3.00240946160015	-1.43838852682137	0.0323965557663414	0.218771248945626
Merged-chr17-21531611-2	chr17	21531111	21532111	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3928.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	3.66362140146137	3.77430245664266	3.97331322287322	3.67475476544955	3.76879179528027	3.99530801654339	0.0342033177451864	0.949372023706579	0.988193302227622
Merged-chr2-128058055-4	chr2	128057564	128058564	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-67974.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.00007474754159	3.32269133849152	3.14730024590507	2.95874984072809	3.08697711283968	3.27497625339002	-0.242692047224031	0.718470681869088	0.927364481477278
Merged-chr11-117824147-2	chr11	117823647	117824647	+	991.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271729, intron 2 of 5)	intron (NM_001271729, intron 2 of 5)	-1772.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	6.92171326481521	6.89082768467861	6.26505432043456	6.98412871337974	6.97125050981935	6.41282735023342	0.135215216225764	0.678697641637247	0.91354683395069
Merged-chr2-30441235-4	chr2	30440726	30441726	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25176.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	7.53156890224195	7.59354313083107	7.64998268207092	7.69328369503584	8.12926736693452	7.71568774849898	0.403369445542807	0.0978069465175615	0.417064164942457
Merged-chr6-91509551-4	chr6	91509069	91510069	+	897.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	6319.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	3.01571534443647	2.84539870363075	2.80589614646654	2.94888225769294	2.81995835341305	3.23055181256226	0.514456250542933	0.47406668724618	0.821247104271739
Merged-chr13-8680646-4	chr13	8680148	8681148	+	816.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	190396.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.81186598619975	3.77204409240308	3.87487669345787	3.21449676387713	3.12432301573376	3.48859382859382	-2.1333692877854	0.000681121545542905	0.0134077978617303
Merged-chr8-117055321-4	chr8	117054840	117055840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 13 of 42)	MIR|SINE|MIR	27109.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	7.02866165572756	6.81728493987405	6.96782984705112	7.18616813210512	7.26250875543533	6.89727211337483	0.29683589972599	0.245167340522546	0.642381314494918
Merged-chr16-15887891-3	chr16	15887413	15888413	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007679, exon 1 of 1)	exon (NM_007679, exon 1 of 1)	627.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	7.24279759562118	7.51282911975863	7.42565092376684	7.36833241893609	7.332554196402	7.82957585203195	0.18288581278289	0.485386536766598	0.827450486557697
Merged-chr4-142083373-2	chr4	142082873	142083873	+	656.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-925.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	7.42822376121215	7.69888104734339	7.19226365710369	7.91529447235985	8.19051377101708	7.2757583034604	0.571139214754408	0.0654852622954603	0.333776275962062
Merged-chr2-84634400-4	chr2	84633959	84634959	+	901.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	15021.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.0602341283779	5.90608287358736	6.31143463297173	6.22106457441066	5.99668966258312	6.06834034747529	0.00783448798049175	0.979357906785169	0.995221944653849
Merged-chr8-27186753-2	chr8	27186253	27187253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12107.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	2.12205538182472	2.12322671175242	2.28758937054011	2.07894169789997	2.16499322654537	1.96283722076181	-0.76001872869548	0.42040434816517	1
Merged-chr2-166771603-5	chr2	166771082	166772082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22185.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	7.641264959055	7.56253288186587	7.11843579240843	7.38129539962603	7.47272648122401	7.03824412197987	-0.221103688322623	0.419058329818207	0.788801788481746
Merged-chr11-62880257-2	chr11	62879779	62880779	+	886.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356521, intron 1 of 6)	B1_Mus2|SINE|Alu	824.0	NM_026210	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	6.8741916199227	7.15777071251759	6.52081740766386	6.86968166178139	6.94191791649664	6.52368899003206	-0.137034233416081	0.647539493055616	0.901492962680207
Merged-chr15-83167663-2	chr15	83167163	83168163	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	4545.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	3.08728525898773	2.80365330377458	3.19641707501207	3.12900443040959	3.07699474961054	3.42680658225847	0.776206260609108	0.263900815080801	0.661879105198449
Merged-chr5-64210420-2	chr5	64209920	64210920	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-19937.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.44472721828267	6.25242619643115	6.29243308741154	6.38402205593206	6.15202938085705	6.05002911084791	-0.211691318562077	0.460985035028258	0.814802506471053
Merged-chr7-102032039-4	chr7	102031555	102032555	+	965.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	intron (NM_029211, intron 4 of 8)	-13900.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	6.70795379048632	6.9213280025755	6.90222003221459	7.064407417095	7.22010070075296	7.42212498709659	0.597939967052784	0.0187477443494185	0.154942621357411
Merged-chr1-178407019-2	chr1	178406519	178407519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	1001.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	7.40118310910341	7.69055282288411	7.39046375652213	7.33387013264508	7.66821267764891	7.34758754866441	-0.0575387501150388	0.81899108211874	0.957182526314153
Merged-chr14-33194421-4	chr14	33193938	33194938	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9372.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	7.81404544368701	7.8300883693838	7.41094220195433	7.48074132724668	7.77207982602798	7.65034318533822	-0.0937829364169736	0.705430520660501	0.922756484933722
Merged-chr8-46336512-4	chr8	46336009	46337009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41838.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	6.08601192788686	6.2827369160756	6.22780977445851	6.68072244916309	6.96386095806681	6.42974402092112	0.843567027551588	0.00381426168161879	0.0501638873487502
Merged-chr12-8638895-4	chr12	8638390	8639390	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35244.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	3.23050797882371	3.23803880337024	3.38413814670794	3.69774663567129	3.19872954270586	3.40006642911361	0.636465906039961	0.314038111004183	0.708450361686261
Merged-chr9-55255184-4	chr9	55254679	55255679	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	28446.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	7.07958320531168	7.29895584630968	7.12547265285465	6.91291026765389	7.02335379157812	6.79077394168732	-0.385790805448081	0.120117434628549	0.463427064523219
Merged-chr11-101466194-4	chr11	101465699	101466699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	0.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	7.67794818963695	8.10058711600911	7.62981651147471	7.21377580721725	7.26813330706202	6.90033254178179	-0.996021369917308	0.00019274076289618	0.00485987072698949
Merged-chr3-79592303-4	chr3	79591958	79592958	+	776.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356326, intron 1 of 10)	intron (NM_001356326, intron 1 of 10)	1121.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	5.17277110401742	5.22041016763259	4.80134626973943	5.2731751684597	5.15094163967393	5.23622232818479	0.260502488290813	0.488096497742219	0.828932205003257
Merged-chr17-88435521-4	chr17	88435038	88436038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5166.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	6.41027092395414	6.17608956119239	6.16636502784947	5.7995876063358	6.03512585983977	5.80124009586328	-0.627292961328389	0.0372963985135448	0.238341062811262
Merged-chr2-32150934-4	chr2	32150435	32151435	+	732.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159634)	promoter-TSS (NM_001159634)	-213.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	4.39761274066578	3.86202041921342	4.08443920909373	4.34834332182235	3.92932565037069	3.95163547782572	-0.126127709474073	0.813753646076742	0.955940138311315
Merged-chr12-80791949-5	chr12	80791431	80792431	+	826.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	1399.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	7.57071801542853	7.59204917983265	7.29846521820268	7.97092231401419	8.03944094802526	7.74609872116181	0.617879787567393	0.0088012503670983	0.0921655874174933
Merged-chr9-99384305-1	chr9	99383805	99384805	+	767.0	f0_balb.idr	Intergenic	Intergenic	-25775.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	2.79959982882447	2.83884768662913	2.97554549522262	2.7311665451628	2.61572572027373	2.74971787787096	-0.920232016459048	0.208936364307326	0.600068238343366
Merged-chr18-23803882-4	chr18	23803388	23804388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153058)	promoter-TSS (NM_153058)	-82.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.90435158206084	8.08949238822823	7.80647861347905	7.65519378538364	7.94620531300471	7.57831710302382	-0.283479236638293	0.23599058213224	0.632279217060081
Merged-chr7-28375697-4	chr7	28375203	28376203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-3041.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	7.86525954838326	7.60684616094256	7.56899076028562	7.69098539389897	7.88671312500348	7.75442213743545	0.131981763344397	0.568088094234712	0.868495285168263
Merged-chr9-100376826-3	chr9	100376326	100377326	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109647.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.28678611179955	3.01797306387497	3.22257166002904	2.81786106039843	2.75868359879308	3.00813060269037	-1.55416471894388	0.0297396672509755	0.207685961613023
Merged-chr14-73173267-2	chr14	73172767	73173767	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	(TTTG)n|Simple_repeat|Simple_repeat	30482.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.44446608086185	7.56762033315412	7.53182559415116	7.40456228619848	7.56310215307907	7.49958097730533	-0.0333734606416917	0.881721438269431	0.972885619279984
Merged-chr11-50269419-2	chr11	50268919	50269919	+	702.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	B2_Mm2|SINE|B2	22917.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	3.33301884638351	3.35933720909745	3.25018189192283	3.39169701808225	3.4011066578271	3.74588001341275	0.747021419230493	0.220347628531066	0.614730271259138
Merged-chr19-6365812-2	chr19	6365312	6366312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 2 of 11)	intron (NM_001360393, intron 2 of 11)	2122.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	3.26043940480841	3.20841654840394	3.38110818462782	3.42569699914331	3.19827619040758	3.65219954247177	0.588436670973618	0.348394538392699	0.736271372528884
Merged-chr14-121987486-4	chr14	121986996	121987996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-22303.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	6.05471033040713	5.78700563604896	5.99549490635741	5.66450944633863	5.88325902295025	6.14090695140352	-0.0797701979396543	0.803104892254558	0.953422605427866
Merged-chr4-136135284-1	chr4	136134784	136135784	+	973.0	f1_balb.idr	Intergenic	CpG	-8538.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.27331832984499	5.24586637029692	5.56183594473589	5.41299535269336	5.55644797221885	5.2347544780555	0.120325053975732	0.733233442755486	0.932039456283818
Merged-chr13-42246035-6	chr13	42245532	42246532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55444.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	7.56520927071441	7.68701343586513	7.22051342369256	7.42767916148427	7.45992715577277	6.88420748371909	-0.321663412317126	0.256336581636824	0.65342976180494
Merged-chr5-19666137-2	chr5	19665637	19666637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-241381.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.26864743956971	6.59556919996867	6.25800480807954	6.95245069500965	7.139113069591	6.82167890160802	0.931108933290474	0.000812761832932622	0.0153456515985155
Merged-chr11-23696063-4	chr11	23695554	23696554	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	30078.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	5.78771490266941	6.24134194812282	6.48475146312171	6.43461310366336	6.40842200550991	6.64077813564963	0.493939953121926	0.121325248604272	0.465840583538566
Merged-chr4-46360061-4	chr4	46359561	46360561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	15867.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	3.24227038576674	3.33641145476464	3.43051931663022	3.31223441396599	3.58057684023827	3.60568302137495	0.649900496395205	0.279368828476502	0.677026983540784
Merged-chr10-68723830-4	chr10	68723346	68724346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	100.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.99690638553161	8.28423918791603	7.98069482397774	8.39422519530929	8.63557620035511	8.10390806346891	0.426934503470636	0.0833642866487637	0.382096263273677
Merged-chr6-33824968-2	chr6	33824468	33825468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-204480.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	6.39253958670572	5.99996903938342	6.25452394210125	6.33270452584307	5.91238216844963	6.4265448825263	0.0128279716228591	0.967885904169194	0.992633833139547
Merged-chr7-84151388-4	chr7	84150833	84151833	+	871.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	560.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.31792125815601	4.39610993540365	4.46672206916872	5.17465145031244	4.62735050950596	5.06260215851764	1.36082661275531	0.00195198039503325	0.0303759836749442
Merged-chr8-68002355-3	chr8	68001854	68002854	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27780.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	2.90442232886209	2.88705306431981	3.03018294293651	2.84012791137714	2.92851342686934	2.92616907108261	-0.189108807897282	0.783021856307427	0.9468504131997
Merged-chr17-15564387-4	chr17	15563868	15564868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1045.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	6.95125281140067	7.09634494441004	6.87908831788677	7.39820572048575	7.23767663407161	7.0097463859687	0.372723875088961	0.141298267390205	0.502077389631641
Merged-chr18-26919097-2	chr18	26918597	26919597	+	895.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1164940.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.49795689132009	2.62616962678551	2.53583606326293	2.59897466644169	2.62581466034122	2.85496602691439	0.770257566501698	0.318609237622951	1
Merged-chr12-32795894-4	chr12	32795371	32796371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24464.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.85351167989376	6.77991084265894	6.57215337943169	6.80330325448205	6.85289116490497	6.97027726904446	0.194251577060224	0.448003899110768	0.806968807271626
Merged-chr2-102978002-4	chr2	102977495	102978495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76330.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.52782192297716	7.23542036427748	7.20114675083067	7.56779498307913	7.62848078838913	7.37615922987285	0.29225981699131	0.232128866374203	0.628415496917772
Merged-chr5-140608921-4	chr5	140608421	140609421	+	928.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	1580.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.4191109264399	6.66694485328945	7.03868970884359	6.96752817290297	6.45558719067675	6.48495201608619	-0.103820942454924	0.743373090581829	0.935615824630138
Merged-chr5-32997876-4	chr5	32997344	32998344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20972.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	3.22824121882847	3.0065067857888	3.13412638878641	3.12529160474642	3.05174209988566	3.1479301842142	-0.08602939463904	0.894712715690422	0.975576532925631
Merged-chr4-43249374-4	chr4	43248879	43249879	+	961.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 24 of 39)	intron (NM_001081413, intron 24 of 39)	-17780.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	5.57130258207262	5.46729819411767	5.58350703459348	4.52910735571839	4.70787065714021	4.64425982602607	-1.93489291412092	4.63359166044199e-07	2.74414160058404e-05
Merged-chr3-153261731-2	chr3	153261231	153262231	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36918.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	5.55177656428679	5.33885359951371	5.55629201713214	5.29458437848146	5.55518145343259	5.53549380395007	-0.0257003235799976	0.939548370930845	0.986720663284284
Merged-chr19-9931283-4	chr19	9930775	9931775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31742.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	8.36458827707263	8.31984714873775	7.90777062289994	7.84382662443723	8.19750632917419	7.81227091090453	-0.351686987299481	0.163854661164533	0.537798828885102
Merged-chr16-36645190-2	chr16	36644690	36645690	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20887.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.40352412388847	4.29574821066655	4.11538260345559	4.17254962516266	4.17242855244899	4.53398520650833	0.0279748008879605	0.953140087246083	0.989359300570295
Merged-chr17-29071648-2	chr17	29071148	29072148	+	780.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	7478.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	3.26636421317659	3.25817539019926	3.26076424108724	3.23310577774332	3.04090682070031	3.15867131457383	-0.504292127729461	0.425229131377738	0.792988748085012
Merged-chr8-125282697-4	chr8	125282181	125283181	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210152.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.44841070339784	4.39395838707325	4.39727264141369	4.31601293473912	4.12418315717732	4.46406797258497	-0.307227645645592	0.496802411857276	0.833336003728501
Merged-chr9-107268202-4	chr9	107267708	107268708	+	816.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	21188.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	4.54068535034023	4.57434630402223	4.54409301631984	4.64990817329225	4.46020721993722	4.72857907531818	0.133556327902745	0.750034954192088	0.937478909261018
Merged-chr16-93832200-4	chr16	93831701	93832701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045529)	promoter-TSS (NM_001045529)	80.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	7.70226627017336	7.6944551474994	7.61672329280035	7.80734563413081	7.80163528374364	7.4167502656415	0.0329398585323276	0.889192179502481	0.974207858658472
Merged-chr11-80137001-3	chr11	80136491	80137491	+	976.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183275, exon 4 of 4)	exon (NM_183275, exon 4 of 4)	5162.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	4.31528075956622	4.24751141945783	4.15926653091965	4.24839579538375	4.27195942630607	3.97512413807523	-0.176710696014197	0.710680050688427	0.924434859419411
Merged-chr17-43376758-3	chr17	43376272	43377272	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357332, intron 1 of 20)	intron (NM_001357332, intron 1 of 20)	-12694.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	3.20020899939324	3.41663738978402	3.65547682712762	3.0965994280626	3.1157708033412	3.42564296289149	-0.864530656910431	0.186819319203377	0.571637546216283
Merged-chr2-150895144-3	chr2	150894666	150895666	+	858.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	B4A|SINE|B4	9565.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	7.14300606570034	7.292136524166	7.23187998458911	6.91041645813794	7.18165244339787	6.89751124080712	-0.318653035308042	0.199643108149192	0.588238275332742
Merged-chr15-30686765-3	chr15	30686263	30687263	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-352363.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	2.68835249901893	3.16533370533445	3.08738530364227	2.83664982417014	2.74283918064661	2.9869770809627	-0.674894182604658	0.366918081109987	0.751972999808775
Merged-chr12-102387443-4	chr12	102386934	102387934	+	980.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	52379.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.24111892210203	3.01407823275411	3.22868961285998	3.10658557877061	2.71008154614561	3.24504239632167	-0.558924962140976	0.445353917653506	0.805110311477591
Merged-chr8-126571252-4	chr8	126570726	126571726	+	961.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22210.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.55433947625665	3.77476389417262	3.59679761194936	3.61571395951458	3.46312485751841	3.3837173656457	-0.553088467927371	0.33825802550312	0.728184150524258
Merged-chr8-46671835-2	chr8	46671335	46672335	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54544.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	3.08238729516954	2.87815824181329	3.18803662224592	3.08037757828467	3.35857261001533	3.08473598579184	0.592780149812554	0.383260894191278	0.764716365434363
Merged-chr9-106903958-4	chr9	106903465	106904465	+	844.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153413, intron 49 of 52)	intron (NM_153413, intron 49 of 52)	-12027.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	2.41042962687149	2.51516362821698	2.3406198313949	2.59272623958069	2.75894786952594	2.74286851154163	1.62108855946146	0.0510179992521503	1
Merged-chr2-50689634-2	chr2	50689134	50690134	+	640.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220050.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.82612837380775	3.24386275098676	3.58024656595484	3.60072281552243	3.29759699794957	3.70263628464234	-0.117555001534307	0.853377631717301	0.965672676480491
Merged-chr17-48320773-3	chr17	48320278	48321278	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4616.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	5.12755314857209	5.18945378838231	5.74667279598688	5.38729693434404	5.46438465124132	5.53061617435911	0.17546168497726	0.639218398224146	0.897953829221252
Merged-chr8-68121289-2	chr8	68120696	68121696	+	980.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146622.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.19267195306036	3.21992212677409	3.27353357739407	3.24537039914934	3.15133619669859	3.23144150031437	-0.0821959640503113	0.894615405933739	0.975576532925631
Merged-chr12-46821607-4	chr12	46821150	46822150	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2875.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	3.05518356591585	3.24210788166108	2.95045101918679	3.24375703997935	3.00342307230888	3.2065919966571	0.251799126269185	0.708650925512585	0.92375127577894
Merged-chr5-32745893-4	chr5	32745401	32746401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347332, intron 1 of 8)	intron (NM_001347332, intron 1 of 8)	441.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	7.00007983723112	6.91084360219769	7.13729700886985	6.9038660911595	7.13085176833319	7.14652940401452	0.0776749937089346	0.754350663173725	0.938865566968672
Merged-chr15-25832757-4	chr15	25832250	25833250	+	940.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	2.57609141562736	2.50223101864597	2.4354435698455	2.54797715190213	2.33742242108901	2.63794653894687	0.00745051287232214	0.992663920567695	1
Merged-chr10-117215948-2	chr10	117215448	117216448	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8559.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	7.25264349327359	7.54672313385539	7.43546814062397	7.38167663777772	7.68027544303853	7.04606218258146	-0.0144746401548771	0.957713056628542	0.989969855526119
Merged-chr12-83847170-2	chr12	83846670	83847670	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073564, intron 3 of 12)	intron (NR_073564, intron 3 of 12)	-4812.0	NM_010949	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	4.41820715907144	4.48576530981209	4.98350648603001	4.80266094000935	5.13916790917418	4.72108614745801	0.613779544373134	0.169107525155163	0.545729869419438
Merged-chr4-133463308-3	chr4	133462816	133463816	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16817.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	6.25553831604207	5.76229427727561	6.22478589699316	4.84554680203347	4.68305499874653	4.94365426583215	-2.53114797787315	1.49137781423092e-11	2.33699746076321e-09
Merged-chr7-128058750-4	chr7	128058257	128059257	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3883.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	5.0972489266452	4.78769505683299	4.63020882563212	4.72839016493049	4.83256318672137	5.07234236438719	0.0358248497714317	0.931304390570559	0.984851910381307
Merged-chr10-86977497-4	chr10	86976987	86977987	+	916.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	30455.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.83692906026438	4.80108369294725	4.95448161056616	4.73708165047782	4.97913301885027	4.63558017043019	-0.12505293641783	0.755961480208216	0.939495792549816
Merged-chr10-13299879-2	chr10	13299418	13300418	+	873.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	MIRb|SINE|MIR	24371.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	7.39432886761401	7.5012267151848	7.20427155668812	7.79573403490274	7.9739555657993	7.48808460444981	0.584905528113557	0.0209101886442033	0.166274367040029
Merged-chr5-76954695-3	chr5	76954194	76955194	+	685.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356974, intron 1 of 8)	RMER6A|LTR|ERVK	-3116.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	3.14383077993101	3.12643923445034	3.48223350739877	3.29393164357563	3.30876633301858	3.34028406332451	0.249376001639356	0.692170880955608	0.918590542007936
Merged-chr1-136346103-4	chr1	136345600	136346600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	4.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	6.55641820542816	6.41933374766076	6.40759821067327	6.3756961063565	6.07432917360715	6.31430773900928	-0.347792870951538	0.21418545199875	0.607411938158068
Merged-chr14-66280296-4	chr14	66279791	66280791	+	927.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	761.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.33886427378359	6.60002532963142	6.40065192964113	6.79661516220331	6.64928752819111	6.60484718365976	0.370584167554389	0.167238521645368	0.542880306552643
Merged-chr5-100705940-4	chr5	100705442	100706442	+	937.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13774.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	3.75055674362298	3.88818864869497	3.79973565478905	4.10654981653042	4.15453117853317	4.20963361694782	1.02201912410722	0.0401398019394708	0.249417716360204
Merged-chr7-90026199-4	chr7	90025697	90026697	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2962.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.40839763434497	4.46531820757429	4.82632888841526	4.5293719912917	4.68896292173611	4.7473232870478	0.215744714373002	0.617578685911226	0.888810836054056
Merged-chr7-105779849-2	chr7	105779349	105780349	+	916.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	B1_Mm|SINE|Alu	7701.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	3.38123176128291	3.82670296344841	3.82134866500005	3.61329632483501	3.65489908703105	3.69041988921762	-0.130089661508752	0.822024522554224	0.958041123079214
Merged-chr7-126697442-2	chr7	126696942	126697942	+	573.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175103)	TTS (NM_175103)	1442.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	2.91674749882457	3.10674307286128	3.33663631696115	2.76613996834332	2.78830404959367	3.2513543823191	-0.803411636532016	0.282007264280903	0.679908771156903
Merged-chr3-122274297-4	chr3	122273795	122274795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153806)	promoter-TSS (NM_153806)	-119.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	7.21519562227167	7.67828465322182	7.34850006574543	7.2115848342987	7.29789322184503	7.15822348959628	-0.306261527084502	0.229327231686979	0.624799321834659
Merged-chr18-77054981-2	chr18	77054481	77055481	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7685.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	2.78827806871791	2.68141161366751	2.78475688004297	2.74641390801274	2.48496108597962	2.67165310459656	-0.638229306812498	0.402414340216391	1
Merged-chr5-130453946-4	chr5	130453368	130454368	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021371, intron 1 of 5)	ID_B1|SINE|B4	5076.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	2.98368280959575	2.75589429033232	2.96166678102167	2.73258892234132	3.14612554276215	2.85105439358452	0.121504442133957	0.870023510972373	0.969985345637844
Merged-chr5-99360349-4	chr5	99359835	99360835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-107408.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.30319226119716	7.35672186609395	7.37182908609475	7.42521553649389	7.43127827629229	7.42895458490758	0.126267255785684	0.570885827551818	0.869272553140792
Merged-chr2-158029377-2	chr2	158028877	158029877	+	742.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029282)	promoter-TSS (NM_029282)	880.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	5.67810840505605	5.88527716315546	6.16433640059164	6.0074737575724	5.99551524248332	5.84519395757437	0.0754250998658309	0.811648378739391	0.955304895434479
Merged-chr6-124712889-2	chr6	124712389	124713389	+	989.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	600.0	NM_007531	12034.0	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	6.31022288702094	6.60250126880879	6.63786195597951	6.31813334833232	6.37522098827761	6.13322907221482	-0.380696893845905	0.181052672978335	0.563309390781554
Merged-chr15-76805988-4	chr15	76805485	76806485	+	820.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	L1M4|LINE|L1	12185.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.13964209830451	5.1652660402063	5.21468735742944	4.77916131906786	5.21647455700757	5.1154576356687	-0.24045985383258	0.525977577655562	0.849272421520383
Merged-chr16-33922447-4	chr16	33921959	33922959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	44579.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	8.20037896701013	8.3376245273968	8.05224912129587	8.11132676564985	8.60854026021639	8.02586506619057	0.110872195952546	0.664974627353687	0.907721942545399
Merged-chr2-11544559-4	chr2	11544065	11545065	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	9364.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.92366010142427	4.00866210248514	4.00443882357411	3.88906912118498	3.62991668908541	3.6626414519356	-0.787732435088654	0.13518797209102	0.491296330439798
Merged-chr1-170282617-4	chr1	170282127	170283127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012009, intron 2 of 3)	intron (NM_012009, intron 2 of 3)	5309.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	4.96092505093977	4.70315799038177	4.74374994157902	4.326747650822	4.38253004005257	4.08365678992907	-1.30688544469227	0.00401861524431617	0.0520842581384828
Merged-chr4-88726804-4	chr4	88726310	88727310	+	849.9916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4302.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.89552481492324	4.82984809659184	5.0467232184751	5.15924418181123	4.88278710333675	5.41320973599443	0.502031926633518	0.203167756991265	0.593047970473348
Merged-chr3-96596000-2	chr3	96595500	96596500	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024851)	promoter-TSS (NM_001024851)	-636.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	4.83880188406193	4.34941255466871	4.10333521388088	4.080437371093	4.00616367411246	3.78368777798355	-1.39139723778215	0.0102180857032025	0.101933398296616
Merged-chr4-142082916-4	chr4	142082412	142083412	+	923.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1386.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	7.42266259061504	7.49830643835005	7.21266675836798	7.88371008009956	7.93078608315903	7.2191268020073	0.492366168225473	0.0806407719586817	0.375781661802083
Merged-chr5-24425827-2	chr5	24425327	24426327	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 1 of 22)	intron (NM_009207, intron 1 of 22)	595.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	4.8332561623006	5.0194756440973	5.01043889528332	5.03002955063693	4.49686334309453	5.10760573752934	-0.133938660096783	0.752459459473974	0.938254285173464
Merged-chr16-4913163-4	chr16	4912655	4913655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	-25956.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	7.91035598859471	8.04224458799467	7.9989783767451	8.12560818322631	8.29479889653165	8.06957434698708	0.263927725576242	0.217279495682954	0.610996579127954
Merged-chr14-20929289-4	chr14	20928790	20929790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009502)	promoter-TSS (NM_009502)	-108.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	6.7012927889884	6.92547169129125	6.71768370034824	6.43290027880525	6.4866590124124	6.31322554821928	-0.593388979390292	0.025539252209389	0.1894562179423
Merged-chr15-78599341-4	chr15	78598834	78599834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2287.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.99696347117682	5.9742489772465	6.20486264314495	6.36575488826396	6.00133181387459	6.09674978270101	0.183105179255846	0.54268100741309	0.857318248006765
Merged-chr3-52030376-3	chr3	52029910	52030910	+	834.833374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	74596.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.03188083061878	2.9825696855567	3.07680101632311	2.98470181380733	3.04641029081417	3.14816562981742	0.136402613776989	0.835622387177706	0.961787999211487
Merged-chr10-122569043-2	chr10	122568543	122569543	+	926.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_040616, intron 1 of 2)	intron (NR_040616, intron 1 of 2)	848.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.09190237181428	5.71279701556434	6.404712169524	6.23710855750768	6.48794152869814	6.41078017023456	0.494559960282172	0.126038534860449	0.474777397325473
Merged-chr2-83673305-4	chr2	83672807	83673807	+	920.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28729.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	4.18547437281257	4.24743536120573	4.08419299078616	3.73565114094546	3.44748688172854	3.69354364842659	-1.80559098187901	0.000885508174772933	0.0163938783057205
Merged-chr2-181244959-2	chr2	181244459	181245459	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2932.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	4.87502956432793	4.94038804525858	5.19361073092214	4.89623114473742	5.30382368958012	5.19400237139132	0.309238339278083	0.423910489116016	0.792272050905538
Merged-chr17-32635116-4	chr17	32634627	32635627	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001100187, exon 13 of 13)	exon (NM_001100187, exon 13 of 13)	13808.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	2.51803500922623	2.41522088185602	2.5979000920011	2.37902760117829	2.45576169392466	2.48432178360976	-0.426506019813987	0.593365553966094	1
Merged-chr3-36066089-4	chr3	36065616	36066616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172678, exon 1 of 18)	exon (NM_172678, exon 1 of 18)	137.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	5.93413560181341	5.96878935443736	6.02144984846221	6.15486945688717	6.06097672589326	6.01385776109484	0.185581852740955	0.518339164913822	0.845156513047069
Merged-chr12-8864056-2	chr12	8863556	8864556	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-57251.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.09598641350758	2.67036151043588	3.17939673875704	2.86524027011173	2.59543427216785	2.9701492872336	-0.87337080804457	0.263972979113144	0.661879105198449
Merged-chr6-29539517-2	chr6	29539017	29540017	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 9 of 9)	intron (NM_001311083, intron 9 of 9)	10235.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	5.11697213145393	5.02735018674653	5.09416947744461	5.43741025126454	5.5020373658866	5.29358200388662	0.690615967848708	0.0469748775027474	0.274370743173425
Merged-chr18-80408783-4	chr18	80408288	80409288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-44534.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	6.12156654779699	6.22196337285278	5.91718144546053	5.44688956197404	5.48599636293758	5.32260602868662	-1.21967241629648	0.000132710642236051	0.00360280167020466
Merged-chr11-75636721-4	chr11	75636222	75637222	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 3 of 11)	intron (NM_008916, intron 3 of 11)	5702.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	6.63357166535039	6.60920030085237	6.94202235086196	6.70779345721415	6.96814770717797	6.8179831459048	0.176373079125209	0.509039048438442	0.840215848574039
Merged-chr9-22309840-3	chr9	22309347	22310347	+	752.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-2209.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	4.75134051299892	4.67571257434723	4.48426826023098	5.34428069933604	5.54763099037596	5.32332674566928	1.6239934814587	2.84552443072393e-05	0.000983674270177301
Merged-chr17-49430625-2	chr17	49430125	49431125	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	2261.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	3.98476469287749	3.76155405776869	4.4999025944338	3.84229891795507	3.62851302391493	3.9485700492007	-0.910706515168527	0.110404713747712	0.443978483302541
Merged-chr13-51644199-2	chr13	51643699	51644699	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	5.38956645942292	5.60552369271796	5.66586270659864	5.86275922660834	5.66910037249542	5.61950861746241	0.314516833298456	0.33414721836135	0.724794373188265
Merged-chr17-56936983-2	chr17	56936483	56937483	+	598.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	2.22011737171908	2.18920254015664	2.61388960582205	2.16142023810771	2.21575481540752	2.32099869277189	-0.780015528853552	0.382412175212045	1
Merged-chr11-70018537-3	chr11	70018047	70019047	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-58.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	4.68406521501668	4.86741800054815	5.04774340765058	5.09772992052023	4.69844154326962	5.14366829404094	0.258562315136241	0.529094778204944	0.850769879725938
Merged-chr11-101759731-3	chr11	101759209	101760209	+	950.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25601.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	4.16044776816599	4.40276001004546	4.25404115221577	4.27590111583106	4.428911547191	4.53521480006556	0.354244593969003	0.435698495173569	0.799285119894771
Merged-chr7-4792380-2	chr7	4791880	4792880	+	561.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-585.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	6.24200660752172	6.60049199144565	6.43428507016738	6.21034852714222	6.54980246324413	6.49371512967191	-0.0114320021956735	0.968553352537004	0.992811398801848
Merged-chr12-110697844-2	chr12	110697344	110698344	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1449.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	3.74297898807256	3.90963034825373	3.83371210792302	4.06556028999945	3.94411771297472	3.79877393635037	0.352120869624448	0.495392761696321	0.832500902975543
Merged-chr13-23895437-2	chr13	23894937	23895937	+	953.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_121611, exon 13 of 13)	non-coding (NR_121611, exon 13 of 13)	19570.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	2.39976393033054	2.29239474961492	2.61319625842406	2.0463335730504	2.12144803113151	2.25112293485122	-2.22670569707091	0.0215718804063816	1
Merged-chr3-95134011-4	chr3	95133518	95134518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153121)	promoter-TSS (NM_153121)	-6.0	NM_001163573	69269.0	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	6.07312086428454	5.91808848972481	5.71220627515748	6.14900309846783	6.38021632519621	5.83075203718386	0.404478741804409	0.214064248602548	0.607279519630221
Merged-chr5-43861304-4	chr5	43860784	43861784	+	735.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7525.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.5102206674701	3.11134418600482	3.26309417048861	3.46308285954169	3.1132022367822	3.65650177267782	0.448439751962667	0.501585479607655	0.835833270717604
Merged-chr7-110616023-4	chr7	110615537	110616537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1117.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	7.17229491019671	6.99902593321348	6.97617900267867	6.93363932647223	7.42798899864638	7.2375560206761	0.250191676363882	0.343008936330023	0.731856773485056
Merged-chr2-25193597-4	chr2	25193099	25194099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146115, exon 2 of 2)	3' UTR (NM_146115, exon 2 of 2)	3214.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	4.60308804669604	4.49065291751666	4.69972417579316	4.44169169569157	4.10244825126638	4.44873364405193	-0.675858580466553	0.133546793278362	0.488819290786001
Merged-chr7-80035257-3	chr7	80034740	80035740	+	831.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	9012.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.84642576948918	5.8247437727869	6.15019144781718	5.91016157045972	6.01396175456664	5.9018606992217	0.0167448853098623	0.9561904078487	0.989807313282509
Merged-chr3-69598368-5	chr3	69597845	69598845	+	876.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020026, intron 1 of 2)	intron (NM_020026, intron 1 of 2)	615.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	6.08683237770053	5.92277258433068	6.23522720991558	5.93923963154524	6.06174767260761	6.02263182999359	-0.118598431866479	0.688253555967077	0.917193226920892
Merged-chr18-80409987-2	chr18	80409487	80410487	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-45733.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.32964338338006	4.01086751665943	3.90155105568324	3.83100407971263	3.66819510710336	4.11419446735508	-0.698557805185287	0.198562715982578	0.586864862411763
Merged-chr16-33683908-4	chr16	33683434	33684434	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-532.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	6.17534924643965	5.87989610480743	6.15489850260419	6.29205082969891	6.35024224346921	6.21530994412354	0.369293562598213	0.201153452966071	0.590682400988171
Merged-chr15-73732228-4	chr15	73731724	73732724	+	992.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	7294.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	7.30530651032903	7.64604321610627	7.77051937087239	7.72487613624384	7.79967766139126	7.75164240053869	0.254732457772725	0.291249278225664	0.688982485432452
Merged-chr6-106793724-4	chr6	106793232	106794232	+	834.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	6355.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	6.85936367262505	7.21140949413568	6.65877852898151	7.25121815439754	7.50381395293953	6.95883294782658	0.490658255195086	0.0939596193124485	0.408367302363553
Merged-chr8-61587646-2	chr8	61587146	61588146	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	3523.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.74709013219755	3.76465684953393	3.96095722574767	4.08176311341724	3.8609441319659	4.52675226055259	1.044139334987	0.054515630532161	0.299870204622202
Merged-chr11-95828320-4	chr11	95827795	95828795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	MIRb|SINE|MIR	3795.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	6.38409022158393	6.57070617450815	6.30824030816576	6.43630516985285	6.66620401274715	6.53701620969592	0.196702637369125	0.471996874350901	0.820417342888691
Merged-chr18-75262700-8	chr18	75262205	75263205	+	906.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	34612.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	5.63258646229121	5.68182805121426	5.52278915472626	5.84344417443996	5.70548096496544	5.36588888968638	0.0833818348903171	0.803611155578263	0.95351077179348
Merged-chr4-151051351-4	chr4	151050841	151051841	+	896.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009498, intron 2 of 4)	L1MB5|LINE|L1	6612.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	4.49060380809463	4.26547789300505	4.40164792663705	4.36047228537868	4.46417670613491	4.59183463698597	0.211743393221486	0.630372065177242	0.894709964383782
Merged-chr10-112991345-2	chr10	112990845	112991845	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62319.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	4.90335219358059	5.33434023604785	4.90981823307156	5.26539174733099	4.74795418776934	5.15309735887662	-0.0118543326674142	0.977296144704772	0.994771164142869
Merged-chr7-35029696-1	chr7	35029196	35030196	+	544.0	f0_balb.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26870.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.49677801817962	6.80268053858371	6.52563531241592	6.56959323251524	6.66182973236176	6.54954062144027	-0.0376659509702847	0.888527796775515	0.974043020158646
Merged-chr17-37028872-4	chr17	37028362	37029362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5464.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	6.36797057022338	6.44440895706123	6.2375485633446	6.77275935629456	6.82764243224065	6.11892838619916	0.434882097433813	0.168227103020737	0.544673426582242
Merged-chr1-165680556-4	chr1	165680036	165681036	+	982.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	27558.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.62952476888261	7.48330179583576	7.65594913218088	7.33927397815155	7.37300869277313	7.32255591656695	-0.355831102618278	0.113812982694192	0.450659116018766
Merged-chr15-73067621-4	chr15	73067129	73068129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6425.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	6.63448432799053	6.954576198031	6.68971310124825	6.89291248356091	7.43469943406094	6.97651276212939	0.554838959300597	0.0535536381406306	0.296795732143705
Merged-chr10-111009986-4	chr10	111009501	111010501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	8.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	8.22554404888967	8.25102157128458	7.90070677832682	8.08181452083564	7.86981558873146	7.97225013517672	-0.235217032264634	0.302506895362789	0.699173943663909
Merged-chr6-17788197-4	chr6	17787691	17788691	+	670.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	RMER1C|Other|Other	39021.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.44998956050148	3.48472453258305	3.53596037620062	3.39408278270997	3.13457627936165	3.50092040413115	-0.561111398228117	0.3582537189638	0.744602774931622
Merged-chr19-7311379-2	chr19	7310879	7311879	+	590.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-15932.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	3.1635041170608	3.63009134979878	3.19546838845999	3.10669995122978	2.96610738770451	3.54181593761101	-0.496534896569938	0.484710624174677	0.826998120210253
Merged-chr18-82505164-4	chr18	82504646	82505646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	30023.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.4685627177962	4.37979118440986	4.87504707130868	4.2888031235672	4.45949099929878	4.69561126847796	-0.235021543897796	0.610279380682695	0.88548880861851
Merged-chr12-111432324-4	chr12	111431808	111432808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028807)	TTS (NM_028807)	-10353.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.41035446386337	6.42775960864518	6.36584484218314	6.18024357672207	6.22908578442173	6.46188180985032	-0.190625859792509	0.488470019753799	0.829219705665341
Merged-chr9-100529154-3	chr9	100528614	100529614	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	RLTR30D_MM|LTR|ERV1	17020.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	4.3265910108612	4.68484235680585	4.59056961069036	5.06813425951767	4.86131589439904	4.81830231834765	0.877692776067136	0.036250199304462	0.234239852739433
Merged-chr3-89388284-2	chr3	89387784	89388784	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-613.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.84960624647202	3.58361400461709	4.31559899659739	3.75296351986058	3.73644067296055	4.34265596694156	0.0691020309807173	0.909160258001507	0.979384717565381
Merged-chr11-86670788-2	chr11	86670288	86671288	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029478, intron 1 of 11)	intron (NM_029478, intron 1 of 11)	487.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	7.95124944641188	7.60911398659383	7.38869858516426	7.90162114950967	8.30331658104339	7.81207249838889	0.503599769433749	0.0649387212318997	0.332276225252532
Merged-chr4-155831550-4	chr4	155830972	155831972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025338, exon 1 of 4)	5' UTR (NM_025338, exon 1 of 4)	203.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	6.76740086550463	6.96342621419855	6.9961440458327	7.130037141857	7.2201841993969	7.10617134796104	0.375523346977117	0.122796245895271	0.468851651063804
Merged-chr9-90268308-2	chr9	90267808	90268808	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	2461.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.58076676747165	5.43899669357827	5.88113676462351	6.05628160483793	5.90300097225652	6.07514867436345	0.675091912675596	0.035134100459688	0.230028974038061
Merged-chr7-90213648-1	chr7	90213148	90214148	+	742.0	f0_c57.idr	Intergenic	Intergenic	51784.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	5.43433927311288	5.30812440405169	5.39186052250882	5.62484883701105	5.57105510256114	5.59971749777981	0.420102824788683	0.196012602405946	0.583827914554481
Merged-chr6-113654297-4	chr6	113653780	113654780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	15813.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.07622846045589	6.74826075028394	6.60321260415921	6.65616217000748	6.71271801882835	6.20211669330663	-0.433696786542734	0.151231944630905	0.518506648409409
Merged-chr9-78186144-1	chr9	78185644	78186644	+	602.0	f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-5822.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	3.39920233151891	3.43596084402817	3.70199102449808	4.79117244667024	4.82648665836986	4.64457606441526	4.26313898356355	2.33708079679525e-11	3.54214606447613e-09
Merged-chr10-79983602-6	chr10	79982771	79983771	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359632, intron 1 of 9)	intron (NM_001359632, intron 1 of 9)	989.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	4.33351572416033	4.29470304164693	4.73391532237058	4.63802104013958	4.58512070923166	4.52784662967324	0.323742191926182	0.464936490688983	0.816631332252401
Merged-chr19-34724812-4	chr19	34724321	34725321	+	633.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	22290.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.42251496002886	4.29542390389912	4.43139569627377	4.36865934530703	4.05664242122252	4.49777906480368	-0.193224454614008	0.678753239562061	0.913553420424444
Merged-chr7-28444147-4	chr7	28443639	28444639	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3202.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.38135972966282	7.23962507777899	7.22354105227356	7.34541291308014	7.57657666723591	7.5188435932404	0.295378456901694	0.205889751470388	0.59648600119592
Merged-chr9-63613774-4	chr9	63613276	63614276	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11130.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	7.1001883832343	7.00303840154363	7.10141337432188	7.28366171851191	7.66885348693311	7.12038275981417	0.482276905834885	0.0674152934652577	0.339619184277864
Merged-chr15-101252356-2	chr15	101251856	101252856	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-14490.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.73180453881066	5.58833060487886	5.91754890201578	6.15905008146834	6.21578656657895	6.40291149605577	0.896360159573862	0.00300880640273271	0.0422237620207253
Merged-chr2-153115892-4	chr2	153115381	153116381	+	844.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	7413.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	5.86179588682844	5.91910930380155	6.3800367370186	6.16471221598963	6.25229398994668	6.6644111837537	0.516567930456749	0.115356789888072	0.453491815789789
Merged-chr15-25556412-4	chr15	25555917	25556917	+	932.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66133.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.36193737224829	2.93236927487374	3.05323062523735	3.14054277930469	3.26626675622042	3.76269603974612	1.10921513164544	0.1204017969778	0.464007814502744
Merged-chr3-21807761-2	chr3	21807261	21808261	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-268891.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.10174518649339	4.15906422970835	3.95989011112161	4.15509667827992	3.80322888482825	4.17329340819566	-0.101449006372212	0.841375769989605	0.962909549034125
Merged-chr1-180945498-3	chr1	180944996	180945996	+	832.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2978.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.64997639385435	5.79358523988661	5.99155364694179	5.68971953802008	5.75260078676286	5.77055875167285	-0.130896370516643	0.676541968495871	0.912525597578286
Merged-chr4-116556111-6	chr4	116555627	116556627	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177670)	promoter-TSS (NM_177670)	-184.0	NM_177670	230657.0	Mm.291484	NM_177670	ENSMUSG00000055900	Tmem69	A630048M13Rik	transmembrane protein 69	protein-coding	7.39903943032919	7.57957367572747	7.68106567324071	7.70940957907947	7.95191288572889	7.57948534174295	0.302970378749246	0.20806906602699	0.598962492509039
Merged-chr2-32964730-2	chr2	32964230	32965230	+	786.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009076)	TTS (NM_009076)	1429.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	3.95205574509876	3.99573261453154	3.97822031755405	4.28556052728014	4.24437294186199	4.04838328761352	0.65408829201739	0.174346775372079	0.553498231280217
Merged-chr13-100785941-2	chr13	100785441	100786441	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172301, intron 1 of 8)	intron (NM_172301, intron 1 of 8)	545.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	3.31678839457364	3.20364868032689	3.61472820927938	3.56033974532073	3.34126391920981	3.30753980278424	0.10263731083658	0.869207384820412	0.969777123267097
Merged-chr17-84329682-4	chr17	84329195	84330195	+	712.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	136513.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.63278391933604	4.76414901545536	4.702849771642	4.76156772320417	4.35842457675484	4.65045017891957	-0.257674845947898	0.545215242682535	0.858055832367997
Merged-chr16-30378281-2	chr16	30377781	30378781	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	B1_Mur2|SINE|Alu	10249.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	3.41570854747285	3.60992731589371	3.77556782144887	3.53521007474255	3.87086191161209	3.79538154132592	0.479852433231393	0.401728123348575	0.777753227258936
Merged-chr2-180705325-4	chr2	180704827	180705827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-3225.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.20105151391296	5.05193403192373	4.95864027885183	5.12098018542629	4.92103087837324	4.79005287349008	-0.265265384089391	0.488063736039922	0.828893483863531
Merged-chr18-62187796-2	chr18	62187296	62188296	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7696.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.66857606280745	5.49279996083427	5.68849314178054	5.38766170151848	5.38165597730135	5.84631520790017	-0.136666068879379	0.693332777926623	0.918930871220844
Merged-chr5-63859011-3	chr5	63858518	63859518	+	813.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	46523.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	3.20065427631049	3.33808281525825	3.17285800758809	3.31646972847649	3.42975409931423	3.41801603950302	0.581480939751738	0.342868815231465	0.731786497147175
Merged-chr19-12460731-3	chr19	12460225	12461225	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010821)	promoter-TSS (NM_010821)	-54.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	7.67981680762409	7.33419640623009	7.60658842910264	7.96992369514364	8.09652229037802	7.68207090732007	0.557828875095388	0.0238927487469289	0.181708055729317
Merged-chr17-73936780-4	chr17	73936287	73937287	+	938.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	13409.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.88070676989843	7.93613164159813	7.51789140342406	7.65690968505565	7.84519970907518	6.98126349529498	-0.343767109385957	0.258149917845626	0.655641852270887
Merged-chr15-98938173-2	chr15	98937673	98938673	+	937.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3783.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	3.05242177886356	2.61286162491352	3.02960571057035	3.12883267180994	2.67717066833738	2.98454120378371	0.139559125607762	0.858019709174017	0.966785186918462
Merged-chr12-113152035-4	chr12	113151499	113152499	+	969.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007763)	promoter-TSS (NM_007763)	-13.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	5.19300576119348	5.17758193743541	5.37394763974042	4.68154018031135	4.51978128692231	4.65260340651429	-1.40373632025375	0.000304922696784836	0.00707135110202694
Merged-chr14-17967475-4	chr14	17966969	17967969	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-14175.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.74532247779832	2.92310755344113	3.17278660693743	2.71780950924542	2.83382878611439	2.96670408648496	-0.54479778160599	0.457181366224971	0.812098864736405
Merged-chr6-87511153-4	chr6	87510659	87511659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-14832.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.07761495912957	6.96345442118771	6.86266612671097	7.00901958175697	6.91254722386607	7.00550967503469	-0.00359479389006778	0.988240652406987	0.99731652667245
Merged-chr2-163744713-5	chr2	163744072	163745072	+	889.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	5667.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	4.424385206148	4.27965558679429	4.48911248953129	4.25188789114822	4.31911859871341	3.76817622953121	-0.672581601350562	0.196689128009052	0.584656761837274
Merged-chr1-171282728-2	chr1	171282228	171283228	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013919, exon 11 of 13)	exon (NM_013919, exon 11 of 13)	-1542.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	5.0194918381177	5.09634236946708	5.13386170882867	4.94557151943701	4.77632003888296	5.13278874142826	-0.290045380876491	0.443793658582094	0.803884349333946
Merged-chr5-123890661-2	chr5	123890188	123891188	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-10668.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	4.12128213451656	4.02042765357514	3.76402550318061	4.09731789120376	3.74956535931299	3.83519817541511	-0.253862379474332	0.634375665320345	0.896341969659052
Merged-chr10-98958940-4	chr10	98958450	98959450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	43798.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.29066332869973	4.53230304962634	4.57623520956775	4.99069205501917	4.82562534070308	4.85328975100109	0.0665758038737728	0.885055667620366	0.973538624783452
Merged-chr7-113613710-2	chr7	113613210	113614210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48723.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	4.40801349192505	4.01686310657586	4.35303960132357	4.32397196923945	4.22540500473361	4.04629678423078	-0.161261303547379	0.740441735402334	0.934528157499283
Merged-chr7-96630638-2	chr7	96630132	96631132	+	718.25	f0_balb.idr|f1_balb.idr	intron (NM_011858, intron 5 of 32)	RLTR45|LTR|ERVK	170917.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	2.85447149689926	2.97794570626209	2.89531352649431	2.86689858009204	2.75871240827191	3.02678610367035	-0.142162082468601	0.839635795862456	0.962784121274377
Merged-chr13-23560844-2	chr13	23560321	23561321	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	1544.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	2.826644538712	3.05093671689395	3.34331561193039	3.12367571674021	3.3399907356728	3.7086049126944	1.30890075392628	0.0695172760505388	0.345007366432854
Merged-chr8-11636462-4	chr8	11635956	11636956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-699.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	6.72659105352007	6.99872248876135	7.03147294953679	6.91735673957937	7.05512262519984	6.96977190353104	0.0955018904632753	0.705867142383547	0.922834459892351
Merged-chr11-54140250-4	chr11	54139757	54140757	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	39333.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.32666388026717	6.04332395944435	5.82501725958601	5.01765555196174	5.06628320975487	5.53475253756484	-1.0527580319863	0.00830646355408397	0.0883815641849201
Merged-chr1-164586737-4	chr1	164586248	164587248	+	926.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83441.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	5.17291368492965	5.39209227242548	5.66007317629891	5.26704251595581	5.08646228222825	5.40190444827452	-0.32695093392345	0.374543559083159	0.758106266771134
Merged-chr18-62984845-2	chr18	62984345	62985345	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	B4|SINE|B4	6929.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	4.81996333867439	4.98161399229298	5.07684742060175	5.15513989066511	4.98218494585556	5.17348885587749	0.30459992236258	0.415582316314356	0.786547479207645
Merged-chr5-24839423-2	chr5	24838923	24839923	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	2938.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	2.79190320693041	2.71653917685864	2.66570303646827	2.96847442511168	2.80947553868831	3.21593194839973	1.36218818985621	0.0672552958028593	0.339137666469697
Merged-chr3-116128192-2	chr3	116127677	116128677	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	1511.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.44293440243788	6.64453945477743	6.44397376289793	6.77445979070746	7.05608203567242	6.38566167181986	0.418217088282968	0.161806742633839	0.534949755287526
Merged-chr16-4754792-2	chr16	4754292	4755292	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2154.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	6.98776274375132	7.15937771794485	6.85873293860536	6.81618914773788	7.3286439581429	6.85664156545807	0.0324274402095288	0.908274365883508	0.979256896393069
Merged-chr9-82973409-3	chr9	82972917	82973917	+	878.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	intron (NM_001081216, intron 4 of 39)	2072.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	4.74182397309786	4.86470631092667	4.70935028654195	5.24793782157799	5.16248679474027	4.77735188771382	0.676632963068459	0.0894049323225289	0.397261052574254
Merged-chr7-30415535-2	chr7	30415035	30416035	+	802.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 3 of 4)	RMER17C|LTR|ERVK	1747.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	5.29695554026182	5.08142618661196	5.37955254097849	5.6482325498409	5.50881462636635	5.88161648425649	0.822162177509103	0.0181361902067594	0.151650699901923
Merged-chr7-81572386-4	chr7	81571976	81572976	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	1184.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	7.19720445600667	7.51799185854191	7.23310384946942	7.25203028626985	7.40422083270937	7.24287217693709	-0.0344292035844972	0.888172137385648	0.97401529899353
Merged-chr8-85719516-1	chr8	85719016	85720016	+	592.0	f1_balb.idr	intron (NM_028007, intron 17 of 17)	intron (NM_028007, intron 17 of 17)	-18592.0	NM_001357288	74513.0	Mm.126079	NM_001081324	ENSMUSG00000036902	Neto2	5530601C23Rik|AI854825|BTCL2	neuropilin (NRP) and tolloid (TLL)-like 2	protein-coding	3.52860612795569	3.14324550931573	3.24996529463004	3.1809721486469	2.81810244605742	3.20679628306876	-1.03895876261385	0.140398736779484	0.500760820920022
Merged-chr10-24087141-3	chr10	24086654	24087654	+	802.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5140.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	4.30757144732849	3.78366163007221	3.89062136598498	3.83425078419439	3.48371798214509	3.63807733166755	-1.15463619492477	0.0448477004082474	0.267036307229204
Merged-chr5-72230791-4	chr5	72230304	72231304	+	915.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	27461.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.28134113762389	5.32592703227741	5.63866880840435	5.55859830060941	5.89507209483377	5.47691675982031	0.482244415551209	0.170125263187242	0.547400730830781
Merged-chr3-145937999-4	chr3	145937566	145938566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356284)	promoter-TSS (NM_001356284)	52.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	7.25157112412505	7.20173717640473	6.89895651633108	7.15795494645244	6.82458094612116	7.08156425784663	-0.167443444345865	0.522299153260281	0.847543107913517
Merged-chr10-89442815-4	chr10	89442307	89443307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1160.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	6.84240346476848	7.06132192873758	6.53274475390541	6.28345353384613	6.45641810985654	6.2790851215121	-0.78405676384025	0.00625297564917392	0.0719139734369681
Merged-chr14-37134748-4	chr14	37134245	37135245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	394.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	8.28136311956675	8.59241117146812	8.19345079198933	8.38513561933695	8.54660177361192	8.20876386634376	0.0281385858301616	0.904472048410184	0.978131323042371
Merged-chr11-98784357-2	chr11	98783857	98784857	+	632.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8980.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	6.32653533282236	6.14595565611218	6.31124119446665	6.384920167083	6.44202709101882	6.49976695521154	0.29692854985425	0.274296123134507	0.671721462492876
Merged-chr9-83539074-2	chr9	83538579	83539579	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9259.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.9040563152415	4.47175011545056	4.26244367268441	3.86874464931244	4.00558616135124	4.05552440931836	-0.737464435535286	0.155463933486522	0.525159710522295
Merged-chr19-37547026-4	chr19	37546568	37547568	+	838.287476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3350.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	6.18663721926356	6.13683583260968	6.22953917842856	5.98625173490495	6.11733814682659	6.0566405559195	-0.212872602272162	0.451186962423977	0.808957790071745
Merged-chr3-159528641-1	chr3	159528141	159529141	+	671.0	f0_balb.idr	intron (NM_029523, intron 11 of 11)	intron (NM_029523, intron 11 of 11)	33208.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	3.79939618788571	3.84935253405624	3.55002713201747	3.69000954952283	4.34720378673484	4.09882626334063	1.01274896414936	0.0803544999368491	0.375119907470004
Merged-chr12-73778263-2	chr12	73777763	73778763	+	926.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313977)	TTS (NM_001313977)	-123061.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.86207843914807	3.71627848095452	4.20112452923112	3.48245246099255	3.38493473551567	3.67717610540813	-1.44088920044312	0.0136103109616239	0.124394415036775
Merged-chr4-124990402-5	chr4	124989895	124990895	+	832.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138683, intron 1 of 5)	intron (NM_138683, intron 1 of 5)	3965.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	3.46038462018751	3.17162088955818	3.13383142534749	3.04913716432795	2.9442198879312	3.37580264288288	-0.579601609407066	0.39676607196788	0.773744054474158
Merged-chr6-97359485-2	chr6	97358985	97359985	+	981.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L1MC4|LINE|L1	99801.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.54336247779777	3.56713352580333	3.81287907822698	3.76064932662423	3.68945552055142	3.9287466109483	0.50872949084523	0.352927308107102	0.740371789314747
Merged-chr8-85036047-4	chr8	85035534	85036534	+	955.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145390)	promoter-TSS (NM_145390)	-881.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	6.46831495947554	6.40231454754674	6.57210750032694	6.68893742721608	7.23100898812482	6.68202277903088	0.673857175370063	0.0212204599024755	0.167907191666525
Merged-chr6-87513600-4	chr6	87513093	87514093	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-17266.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.7544699057467	3.74834727988043	3.89498898422022	4.29078815844684	4.23800574490634	4.3362648932469	1.46469708768272	0.00294452297591725	0.0415337968774576
Merged-chr13-48872999-2	chr13	48872499	48873499	+	762.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2114.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	4.39125332956997	4.22823986321998	4.27155065043257	4.10028437482314	3.82348374328916	4.20509934423575	-0.73095983841968	0.134831641594628	0.490808843120381
Merged-chr11-95859254-3	chr11	95858774	95859774	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045187, intron 1 of 1)	CpG	457.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	8.23136067990872	8.38704788381395	8.13143453350869	8.10273364506967	8.48624630021184	7.90746009479086	-0.0829392476880563	0.739771603693263	0.934245371298156
Merged-chr9-116058630-4	chr9	116058124	116059124	+	870.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	116739.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.11413254114127	6.32212173485794	6.18826373331372	6.2041907392932	6.24567013244257	6.16375112286654	-0.00915330928942458	0.973938053170923	0.99417402315897
Merged-chr11-97512435-7	chr11	97511921	97512921	+	874.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-12081.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	5.0761258383838	5.13540628882643	5.94061342164644	5.67438906335244	5.68673520142043	5.19951479970514	0.19922339871766	0.642605250647307	0.899439807829718
Merged-chr19-32281413-2	chr19	32280913	32281913	+	827.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	67903.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.81252909464198	2.70058819163172	3.2137224196101	3.1112204656284	2.72171002737967	3.06476275493905	0.24091958754282	0.750763807135839	0.937615268276031
Merged-chr7-30321749-4	chr7	30321275	30322275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033140, exon 1 of 1)	3' UTR (NM_001033140, exon 1 of 1)	600.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	7.78318154700974	8.00969008671837	7.72940086419229	7.28197114887289	7.04175383786658	7.22624679199974	-0.977750623483847	3.71151459186158e-05	0.00123087965787014
Merged-chr19-3930822-3	chr19	3930316	3931316	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	6.34523313743918	6.43189855423217	6.78546075063239	6.57910886894409	7.02222606040044	6.7698626176868	0.449742319410884	0.123151033900739	0.469492863044658
Merged-chr9-72467720-3	chr9	72467209	72468209	+	919.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	24250.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	4.04591340527491	4.31134676664726	4.13968141085885	4.78359951361791	4.82024827340691	4.77604230448026	1.56101698408356	0.000446020488788658	0.00959970844053974
Merged-chr17-28709929-4	chr17	28709405	28710405	+	923.160706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	17337.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.4536634217982	6.56309518488899	6.63402981306679	6.15537975961609	6.49273000720909	6.47426095637226	-0.265807954503124	0.340010728941638	0.72967866276074
Merged-chr11-4637681-4	chr11	4637171	4638171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029291)	promoter-TSS (NM_029291)	-122.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	6.77699067084062	6.99619396077884	6.92261462310076	7.08481488403926	7.20464557617296	6.66754517044146	0.177943332508737	0.515664743264029	0.843867879491712
Merged-chr13-34651114-4	chr13	34650589	34651589	+	890.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1592.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	6.49104148509799	6.34057864128411	6.35020825022742	5.92922349756456	5.74204611178451	5.72819771878186	-1.01567470868842	0.000477851553210205	0.0101457188159007
Merged-chr12-12230289-4	chr12	12229780	12230780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-31859.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.18907635485191	7.16434084222501	7.02014520291706	7.05602977005191	7.23266060000763	7.13023375637753	0.020186636147099	0.932634051506222	0.985254864630157
Merged-chr10-77619841-4	chr10	77619324	77620324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14_RN|LTR|ERV1	-2497.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	7.20513827537009	7.17091698523404	7.3693008563675	7.10809709313836	7.63191462195	7.23538718763677	0.159714364857439	0.546105677890578	0.85849711034619
Merged-chr7-140945236-2	chr7	140944736	140945736	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153832, intron 5 of 11)	intron (NR_153832, intron 5 of 11)	3845.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	2.71963320125736	2.8296909369028	2.76007027790455	2.79674998614393	2.79608720051139	2.95278970186335	0.384604584459999	0.589806789882306	0.877010728792989
Merged-chr12-99560817-4	chr12	99560323	99561323	+	848.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	5.87978482959484	5.67819323085618	6.00039985501293	6.04301528080627	6.72888779820523	6.15095049361935	0.857705200776981	0.0115081616349763	0.111035611470675
Merged-chr12-40504204-4	chr12	40503699	40504699	+	975.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1M2|LINE|L1	58146.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.46693594420594	4.94091515855076	4.74677780733908	4.96722606504052	5.12453479358222	4.81353125067081	0.548835697694469	0.189019672573796	0.574599916539545
Merged-chr19-6164349-4	chr19	6163832	6164832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028967)	promoter-TSS (NM_028967)	-107.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	6.21925533365436	6.14569263629149	6.30402304668406	6.16289633498619	6.30862245884132	6.071035387945	-0.0441807067883313	0.876110454554139	0.971185372218754
Merged-chr2-163417460-2	chr2	163416960	163417960	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	2010.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	3.72213374259671	3.63092748252255	3.58664864661104	3.92381725054276	4.1448295451711	4.11749264306238	1.31644720387272	0.0127304320219382	0.119207043403267
Merged-chr17-17626106-2	chr17	17625606	17626606	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1617.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.61121378652687	6.92909039942052	6.6541619241574	7.21203860435277	7.54705855631809	7.15171836317212	0.878444334042081	0.00110580555871762	0.0194577328413347
Merged-chr4-99163729-4	chr4	99163227	99164227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30207.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.82870234147221	6.68291497045417	6.72400782910807	6.89560598354226	6.82301721017766	6.65189278400201	0.0813658480728021	0.749252113512785	0.93722412559109
Merged-chr7-101858597-4	chr7	101858089	101859089	+	951.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008034, exon 7 of 7)	exon (NM_008034, exon 7 of 7)	-1399.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	4.15254106381047	3.82797189601048	4.2407860743195	3.92063812556795	3.78819108649358	4.0887156718082	-0.445373396079189	0.392229663457592	0.770986885190033
Merged-chr6-129436901-2	chr6	129436401	129437401	+	768.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15099.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	5.30565698989882	5.04376164141814	5.21359656627652	5.33029008610581	5.25960183861661	5.14353393249819	0.122148150348784	0.73202963251404	0.931655063903171
Merged-chr7-27258699-4	chr7	27258168	27259168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010950)	promoter-TSS (NM_010950)	-93.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	5.23490547081517	5.18182721727709	5.29099434921933	5.33364099838671	5.43191854951062	5.32318852761581	0.270795832975789	0.426736679078483	0.793849313274879
Merged-chr11-103403807-6	chr11	103403291	103404291	+	925.8703609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	8873.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	7.37343515979592	7.22616108045805	6.89574501243138	7.40315553429763	7.49133620203012	6.93907510088731	0.180454809001518	0.523436820428188	0.84820746264669
Merged-chr14-43918368-4	chr14	43917852	43918852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5016.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	3.24794201447634	3.3708346819101	3.15869479709592	3.22068098810312	3.41421469487799	3.34748639709849	0.26188111815764	0.674111982890669	0.911834672394811
Merged-chr1-85258100-1	chr1	85257600	85258600	+	547.0	f1_balb.idr	intron (NM_175219, intron 3 of 7)	intron (NM_175219, intron 3 of 7)	12466.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.99162396141273	2.93418212896634	3.05199781308174	2.52291092937196	2.5364913388583	3.178010022725	-0.833735697012649	0.553851783655054	0.862560814823122
Merged-chr11-118160296-2	chr11	118159796	118160796	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31077.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.80617987738325	3.94037418505884	3.94406187448983	3.85031640260885	3.78753455740271	4.05837826573446	-0.0042346659684609	0.993424057506368	0.998651348330892
Merged-chr12-119398417-4	chr12	119397914	119398914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44996.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	5.02123808818199	4.74336896407446	4.75907426567089	4.79589318805177	5.05744114521903	5.20898627816807	0.381954164130119	0.339520841944076	0.729313720985741
Merged-chr2-129381792-2	chr2	129381292	129382292	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10653.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.85995408694271	5.5780827728258	5.88098465111599	5.65405740183208	5.80009081826558	5.87113607939748	0.00260192522326431	0.993468352254119	0.99867729787567
Merged-chr1-170997899-4	chr1	170997392	170998392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21034.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	7.61899031753884	7.71484667448569	7.59257357101237	7.78308065340489	8.18408392941148	7.7420601899964	0.405829228650145	0.0942327407575792	0.408956234963576
Merged-chr8-83741281-4	chr8	83740773	83741773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163031)	promoter-TSS (NM_001163031)	38.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.39734378865014	8.44456099854123	8.13208446943507	8.51204730234338	8.70855428092465	8.1450139247096	0.205152202152691	0.4047950901085	0.779791650050306
Merged-chr11-73176583-4	chr11	73176127	73177127	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029564)	promoter-TSS (NM_029564)	381.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	7.4087482035127	7.84151683816776	7.42098399265913	7.40689072122336	7.52280901200516	7.21162749239343	-0.272474453211842	0.293292279172309	0.690221391260893
Merged-chr1-93478419-4	chr1	93477922	93478922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	-45.0	NM_001357556	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	8.29290543296874	8.0853234453875	8.15992539645897	8.01645116897934	8.14025279522322	7.94242658759422	-0.202320125703107	0.347332056491078	0.735477309583349
Merged-chr14-54781196-4	chr14	54780713	54781713	+	914.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016972, exon 1 of 11)	exon (NM_016972, exon 1 of 11)	673.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.3779738267488	6.68988649688664	6.74108176476527	6.62188046782783	7.15260054449887	7.04905559493626	0.553304821814751	0.0567770280550744	0.307186534258171
Merged-chr14-55647688-2	chr14	55647188	55648188	+	728.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2496.0	NM_001253888	71099.0	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	3.07290995834592	3.23675871364938	3.52770947949725	3.20755714539666	3.34796581350766	3.27919661605468	-0.0151837547797085	0.981186795210706	0.995687678606673
Merged-chr11-116853680-2	chr11	116853188	116854188	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-74.0	NM_001361585	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	9.1505485546102	9.02142207825139	8.7050861677206	8.6244583438081	8.88832210858761	8.37094778784955	-0.44512745688464	0.0704136463621456	0.347713868635099
Merged-chr3-105717014-4	chr3	105716522	105717522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175398, exon 2 of 2)	exon (NM_175398, exon 2 of 2)	11564.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	6.64895997993068	6.16970706651514	6.43120689601362	5.69665553282857	5.48127858684443	5.84534209047646	-1.31673905007109	3.88197815097928e-05	0.00128026808555959
Merged-chr2-120405291-2	chr2	120404791	120405791	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172672, intron 1 of 23)	intron (NM_172672, intron 1 of 23)	-1175.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	6.5285865998537	6.9023806337705	7.01783476449411	7.03680550479369	7.22113731507981	7.18675871599316	0.496042753591734	0.0639362601068635	0.329514001665957
Merged-chr1-46832175-4	chr1	46831681	46832681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 4 of 10)	intron (NM_001356416, intron 4 of 10)	21437.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	3.92894973554647	4.06724985995413	3.71185395614447	3.78979899612306	3.78480277741229	3.88844694550694	-0.31691894734442	0.547348528900687	0.859266262227511
Merged-chr5-43848485-4	chr5	43848010	43849010	+	978.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20299.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.08891371789886	6.14804031710406	6.10978734030617	5.63424776709161	5.68084956832704	5.97372332417768	-0.626451714100769	0.0387253286093591	0.243999480760832
Merged-chr2-70091349-4	chr2	70090852	70091852	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177376, intron 2 of 34)	MLT1B|LTR|ERVL-MaLR	52226.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	4.75292944905773	4.62138127466625	4.13926026761411	4.12561753582857	4.06090882542818	4.21025796983117	-1.09255432912722	0.02482517774582	0.186241342074116
Merged-chr7-79884133-4	chr7	79883641	79884641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009682, intron 4 of 5)	L1MB2|LINE|L1	-35931.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	5.36696631350766	5.00999673949909	4.94408521161077	5.16991047404023	4.9511049043248	5.6431947077672	0.302994230323997	0.466285377431318	0.817498201823315
Merged-chr6-117880824-2	chr6	117880324	117881324	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	17943.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	7.81473664890828	8.17026258998692	7.84405605011397	8.08665004571004	8.46538409290699	7.9330380250251	0.328114212173971	0.201275815655444	0.590833206415655
Merged-chr1-88643022-4	chr1	88642523	88643523	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59168.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.23547351909499	4.00782315904798	4.01656945148914	4.17616700031167	4.30558128911773	4.08656319301122	0.294454975068235	0.541692821288567	0.856888201246726
Merged-chr13-34257881-2	chr13	34257381	34258381	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87301.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.26827221952049	4.4109529300987	4.41945535802071	4.35790112056311	4.34683557648247	4.16820784334843	-0.173439650648272	0.700601856640291	0.920942800747636
Merged-chr12-54698162-2	chr12	54697662	54698662	+	729.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-2268.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	3.22101683158898	2.77099626860455	3.07280890233944	2.73122157442945	3.12006700768513	2.90467686244004	-0.46909447376468	0.537300606932276	0.854381181468677
Merged-chr11-69939561-2	chr11	69939061	69940061	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016875, intron 4 of 8)	intron (NM_016875, intron 4 of 8)	3233.0	NM_001347634	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	2.17146379635268	2.00670889868588	2.23508164131291	1.92064999826799	2.06085151200934	1.98143966504306	-1.16548193388304	0.226712752183829	1
Merged-chr6-120463956-6	chr6	120463415	120464415	+	974.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	718.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.89305184896996	7.20575614975231	7.4180217240495	7.04679083241653	6.93553321780634	6.99052959382037	-0.291909560340413	0.269181566593636	0.66629407200667
Merged-chr8-119439686-2	chr8	119439186	119440186	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	2524.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	4.666740384593	4.76751542873077	5.12964158153223	4.87841623993771	4.80249797158769	4.85654846469407	-0.0274505584737061	0.945947737985102	0.98796006280508
Merged-chr2-122126384-4	chr2	122125883	122126883	+	785.295837	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 7 of 17)	intron (NM_026251, intron 7 of 17)	-7997.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	3.84707838955198	3.79549515902869	3.804146361374	3.61153154618451	3.70685195306617	3.87318208847935	-0.283814181747853	0.592503685613104	0.878055258824805
Merged-chr16-12090378-4	chr16	12089938	12090938	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	106325.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	4.56486122455093	4.43683301964445	4.50708360335702	4.65485852354886	4.727827949869	4.65676012187243	0.434504312997711	0.291582611789986	0.689176056077622
Merged-chr7-31156484-4	chr7	31155996	31156996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5325.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	6.2595453276466	5.96428620282812	6.22511845905014	6.45602599225634	6.05799129860389	6.22410757957181	0.169172946456133	0.575854395924748	0.87142885060749
Merged-chr10-77540858-4	chr10	77540364	77541364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	10516.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	6.31768100933664	6.37410277414747	6.22757450071791	6.22866711017359	6.07460229405978	5.99861016840734	-0.344014925585764	0.222581171355171	0.617547053435896
Merged-chr4-135237534-2	chr4	135237034	135238034	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35226.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	5.68378719268975	5.70841245630216	5.43666869984361	5.35870519537706	5.63327400433274	5.27278818069947	-0.337103125862971	0.329807691336675	0.721504110160967
Merged-chr7-4499653-2	chr7	4499153	4500153	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	ID_B1|SINE|B4	2027.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	5.56468009003267	5.34066394594219	5.1336753088475	5.74657888753836	5.47350621821107	5.43475986759685	0.366936362190867	0.302600877073097	0.699236684703777
Merged-chr6-143167177-4	chr6	143166686	143167686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029250)	promoter-TSS (NM_029250)	-44.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	8.51902316034541	8.45364916794108	8.13855621564386	8.53858408975616	8.34435316149887	8.06330566373316	-0.0713283396962852	0.768637142487041	0.942883922573185
Merged-chr15-73135144-4	chr15	73134641	73135641	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 3 of 18)	ORR1B1|LTR|ERVL-MaLR	44729.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	3.91726068470448	4.13686699614304	4.11709004927393	4.16144317189642	4.18333193068222	4.77323871091169	0.905314628973477	0.0768858571210128	0.365342835893166
Merged-chr2-30061328-2	chr2	30060828	30061828	+	859.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023871)	promoter-TSS (NM_023871)	-668.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	3.67282562640678	3.45094685317989	3.69284455324865	3.54424512112761	3.56565075736485	3.81103879899916	0.113950344484745	0.84035492389984	0.962819298477451
Merged-chr15-25284539-4	chr15	25284034	25285034	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129230.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.13806488439162	3.74332670440788	3.8000943482879	3.97784390009378	4.3176620526712	3.92560118508639	0.540401140081267	0.316558110700048	0.710619341888818
Merged-chr5-99271351-2	chr5	99270851	99271851	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-18424.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.1249735277653	3.09110600847349	3.02338695817766	2.84077681354381	2.82253796761707	2.9762972440108	-0.992399139794101	0.148827985028329	0.51474266265846
Merged-chr14-8173832-4	chr14	8173317	8174317	+	918.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-825.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	8.06984024257311	8.60169917956628	7.99489235270229	8.20660603883929	8.74619048097535	7.75948589022183	0.0759808524582148	0.812764856114196	0.955776522477769
Merged-chr3-31100215-4	chr3	31099701	31100701	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5143.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	6.53306560740318	6.8765953741376	6.59248613686238	7.17801485084619	7.54176155440128	7.27327555194044	1.00905022959178	0.000171195693100968	0.00441427060165644
Merged-chr9-62367862-3	chr9	62367395	62368395	+	850.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	26552.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	4.23517638951625	4.17016555434224	4.11350370542838	4.29258983467181	3.97601822700349	4.03499657928341	-0.195132182958306	0.686538678170193	0.916761528494478
Merged-chr1-151245407-3	chr1	151244914	151245914	+	690.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99072.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	2.76630435608539	2.41006303271342	2.6685040189423	2.58878626845743	2.34124331584043	2.55323064603649	-0.741052439104989	0.370443238744111	1
Merged-chr15-80706404-2	chr15	80705904	80706904	+	726.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	3.95412752519257	3.81482087075962	3.72866462187925	3.70475087414249	3.78024796206265	3.45574625330598	-0.57787577561667	0.304648207741575	0.701027724333949
Merged-chr4-122853278-4	chr4	122852793	122853793	+	872.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	17066.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	6.82076514073938	6.70904690370786	6.55896107499639	6.65837091481693	6.74741191084542	6.87136079889376	0.0792996114696845	0.759769283630263	0.940572672765463
Merged-chr14-75845207-4	chr14	75844728	75845728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	-28.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	8.96360315980432	8.94589082048471	8.66605636731537	8.67766813619836	8.63555478533692	8.54666924290672	-0.340366651370039	0.103037377865822	0.427977521169197
Merged-chr2-166651936-3	chr2	166651428	166652428	+	737.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	61904.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.52600361070644	4.75236347138532	4.98179361890739	4.55456800208662	4.64432793862841	4.76737183754574	-0.239829748864655	0.569861441390825	0.868905294300045
Merged-chr2-153160870-2	chr2	153160370	153161370	+	632.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	-431.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.68723961663447	5.29766703727431	5.47019410105018	5.55545545359189	5.68464684265502	5.44290833319552	0.1440094669053	0.674376741394696	0.911852710156386
Merged-chr7-80779502-4	chr7	80779005	80780005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23826.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.41470294839001	7.43460489105329	7.24607811371888	7.4192733505665	7.74849423577932	7.41746374236849	0.254494867749953	0.295666364625618	0.6925798212347
Merged-chr12-8926955-2	chr12	8926455	8927455	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	5648.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	6.0906840607323	6.4423023797364	6.21114906305942	6.54664423539901	6.90276886333889	6.54338575377248	0.684627641835787	0.0193576359919681	0.15803671267854
Merged-chr5-134234030-2	chr5	134233530	134234530	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4405.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	5.95476730987205	5.80990486731269	6.06191750294674	5.93849080975133	5.64848836557267	5.60246172924394	-0.355700734790749	0.262486304644437	0.66048925903673
Merged-chr5-21785216-4	chr5	21784736	21785736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009584)	promoter-TSS (NM_009584)	-47.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	6.683550431797	6.73586181819724	6.53580354740741	6.90950763411988	7.15667001111908	6.81279669485206	0.49132041529835	0.0612864646629149	0.321030438937538
Merged-chr4-87887056-2	chr4	87886556	87887556	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-80733.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	2.52075038435435	2.58772342050479	2.5601574509001	2.79714895804656	2.62238499607035	2.82224650293906	1.06043935050537	0.164336414281571	1
Merged-chr4-126102554-4	chr4	126102077	126103077	+	996.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1380.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	7.31780919795314	7.62257702577884	7.20564066736562	6.60401560494085	7.02679112986735	6.81275266264433	-0.8551183007749	0.00177037628635129	0.0281124942814347
Merged-chr9-60602174-4	chr9	60601693	60602693	+	955.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311095, intron 12 of 15)	intron (NM_001311095, intron 12 of 15)	-56311.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	3.59975972779207	3.63672131779728	3.45535831528743	3.15358419417519	3.38347496114243	3.47136033622542	-0.864172973965207	0.156154753515092	0.526455629779472
Merged-chr5-142907394-4	chr5	142906905	142907905	+	874.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-651.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.48765900128382	6.6767728276218	6.77759428950746	7.34742015970252	7.64688328937613	7.80143981304131	1.45038228148126	2.90664357035777e-08	2.39224528390039e-06
Merged-chr11-95822283-2	chr11	95821783	95822783	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2217.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	2.68159416204258	2.70188510756868	2.97347136827523	2.62955125304167	2.70086002990745	2.62634238083005	-0.704421806125505	0.351944517401735	0.739586550312439
Merged-chr12-52603881-4	chr12	52603378	52604378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-1556.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	8.47615122704749	8.87635065053009	8.25798165519804	8.65166360790433	9.01152431002452	8.34572509102538	0.188297700098495	0.498633213893187	0.833992089521886
Merged-chr14-34769174-4	chr14	34768682	34769682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50954.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	5.44644103361525	5.19771721783318	5.11753742223953	5.42632855575403	5.36970501590059	4.7847510123164	-0.0587043285372175	0.883955475383381	0.973466734537782
Merged-chr10-37320243-4	chr10	37319729	37320729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-181303.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.68343879442173	5.79151041526687	5.30282966652498	6.03272539914628	6.17799341516988	5.62901217218413	0.636404038327411	0.0721297505185475	0.352744797756153
Merged-chr5-114922507-1	chr5	114922007	114923007	+	1000.0	f1_balb.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-733.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	8.3675393844289	8.81796438094249	8.04159061652328	8.32834422298539	8.98343434133284	7.89094408779794	0.0481888638755889	0.927884245521213	0.983740101474131
Merged-chr2-169089282-1	chr2	169088782	169089782	+	797.0	f0_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	111013.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	3.39740330474138	3.30721142090508	3.41865951559666	3.15056355517217	2.98519498807073	2.96076589142134	-1.47700385294486	0.0261430115114889	0.191983107929116
Merged-chr18-39446135-4	chr18	39445632	39446632	+	944.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	41113.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.52358551244713	4.56898759907316	4.77396678773699	4.69189683435058	4.76197889411401	4.87490418476589	0.368504483673301	0.364692710994327	0.750028369485675
Merged-chr7-45536227-4	chr7	45535727	45536727	+	950.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 6 of 19)	RMER16_Mm|LTR|ERVK	9897.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	4.32413410322547	4.15649861115099	4.25916643722885	4.45602139260678	4.44732852999569	4.45928213110985	0.541363385782363	0.221222732765099	0.6157275086041
Merged-chr4-127250138-4	chr4	127249623	127250623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6339.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	2.64784440028674	2.44331078007221	2.44160152117833	2.57512907472812	2.62806592095016	2.83020914822466	0.91447336299481	0.251766131642611	1
Merged-chr7-123399080-4	chr7	123398581	123399581	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-8736.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	3.35216178182525	3.31837314081095	3.23876848590075	3.23944834976083	3.29161530805475	3.47665356815229	0.110606544983985	0.856232029086651	0.966418722972315
Merged-chr15-27708663-4	chr15	27708157	27709157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27115.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.76983462550216	5.42592144506449	5.38197866119847	5.30075788337158	5.30388389573135	4.94925714109787	-0.660107714848828	0.0747801639490148	0.360003927439807
Merged-chr16-22438890-3	chr16	22438415	22439415	+	958.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358428)	promoter-TSS (NM_001358428)	-547.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	6.37967022291633	6.42779478022374	6.65171662594546	6.6943848213921	6.73819612387523	6.61252324021841	0.325392353144428	0.217269559822269	0.610996579127954
Merged-chr4-46458632-3	chr4	46458124	46459124	+	780.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	intron (NM_130889, intron 1 of 6)	7698.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	2.88857602848838	2.49591957586421	2.73726260014842	2.75904770971633	2.55410203058673	2.81095380025962	-0.0450103357502384	0.954188686903987	0.989495550016789
Merged-chr13-92651142-4	chr13	92650633	92651633	+	977.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172588, intron 1 of 11)	MIRb|SINE|MIR	39995.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	3.64818011259498	3.43868690343649	3.56289531333771	3.49810736065793	3.34093893848735	3.23166494922523	-0.705525609368623	0.242003046870652	0.639104507431288
Merged-chr18-4920525-4	chr18	4920021	4921021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	108035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	5.47436327808975	5.54054782129111	5.9004460975119	4.97181523191758	4.66440367992323	5.40031354300616	-1.22247139369132	0.00273982242769136	0.039285356999916
Merged-chr6-131293265-4	chr6	131292724	131293724	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025564)	promoter-TSS (NM_025564)	20.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	7.14893058372884	7.43456986632729	7.07856527080535	7.63105791598361	7.49503707553917	7.20154767858136	0.331277949358928	0.202070050001745	0.591773948258361
Merged-chr12-103424386-2	chr12	103423886	103424886	+	769.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020494, exon 2 of 9)	exon (NM_020494, exon 2 of 9)	1394.0	NM_001159502	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	3.87006569888533	3.65235263189202	4.100705343279	3.78712429764442	3.68611227141446	3.74172418591329	-0.453465958386667	0.404506504989508	0.779671413327182
Merged-chr10-53925611-4	chr10	53925113	53926113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	150183.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	5.68800597926622	5.35616539850102	5.24591020190269	4.68153786986596	5.06772341134258	4.91949173733732	-1.1179083181279	0.00451539770331177	0.0569613723616079
Merged-chr5-121733995-4	chr5	121733513	121734513	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	-4519.0	NM_001359153	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	4.48458338266818	4.43310489047296	4.93079838771493	4.47513136712737	4.50066545846029	4.29485228715722	-0.470572574180051	0.303741168851363	0.700276943775019
Merged-chr10-80576531-4	chr10	80576036	80577036	+	988.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_078477, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	760.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	5.50545191640124	4.95453097066007	5.42658442633418	5.00460428808839	5.14557385228708	5.31420704958729	-0.320291150548919	0.410070297968591	0.783116615634315
Merged-chr5-125359795-2	chr5	125359295	125360295	+	618.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18701.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.25033196274286	2.22270895471443	2.38317845857444	2.43439032425916	2.34206452057532	2.58272690151139	1.10773820910379	0.187524335671772	1
Merged-chr14-31166260-4	chr14	31165792	31166792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	2349.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.31860106271265	6.09124190185248	6.27975293709604	6.09822147615511	5.70443594881309	6.37637429586903	-0.265638306951517	0.416136918231747	0.78703200622012
Merged-chr17-67252328-1	chr17	67251828	67252828	+	549.0	f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	102131.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.68547366212524	2.74626281987985	2.69784659595394	2.88992446530495	2.74872591742825	3.12650068269806	1.08234649393029	0.142417025161298	0.50377230071085
Merged-chr4-45320471-4	chr4	45319956	45320956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025513, exon 1 of 4)	exon (NM_025513, exon 1 of 4)	147.0	NM_025513	66362.0	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	7.77300172255463	8.1494183263077	7.82817276867523	7.29699380142233	7.39947313960982	7.58674870555375	-0.727423666620468	0.00281328099736995	0.0400628932447645
Merged-chr2-90508793-2	chr2	90508293	90509293	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B1_Mur3|SINE|Alu	-29619.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.65649779400019	6.92036752204866	6.26639526784955	6.7333374312664	6.99430043400092	6.56723583865313	0.204925555210986	0.504680664120476	0.837806481766929
Merged-chr16-31022458-4	chr16	31021955	31022955	+	926.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	58977.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.70138900117867	3.93361981096837	3.9296612547327	3.50598301855325	3.33010157754625	3.36351182250613	-1.6451919028889	0.00503072193961341	0.0614949773984652
Merged-chr8-120117073-3	chr8	120116553	120117553	+	922.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	L2a|LINE|L2	2901.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	4.4163015613243	4.54110222007385	4.84307546319205	4.57071232047976	4.5654322856959	4.5700715333406	-0.0782258150795039	0.855636194560832	0.966244542232428
Merged-chr11-107451260-4	chr11	107450733	107451733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	19487.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.99112501108105	6.86791167767889	6.43307012760468	7.03184836113508	7.0636809107953	6.34652868686261	0.110068435454955	0.735573203707467	0.932744628746236
Merged-chr19-18595053-3	chr19	18594558	18595558	+	840.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 3 of 9)	L1MC5|LINE|L1	36755.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.61365973663188	3.5458499991869	3.46718010930372	3.73321242926891	3.27385857756231	3.59417608137621	-0.0079616121851252	0.9894153355705	0.997597007948949
Merged-chr3-79532872-4	chr3	79532379	79533379	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	34800.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	6.481717886908	6.89733524182998	6.51549761207724	7.01387819814958	7.31418181546647	6.59391403849061	0.567647458137344	0.0679320565188367	0.341091902202124
Merged-chr10-120120512-2	chr10	120120012	120121012	+	703.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7547.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	2.35849321266745	2.34805551216168	2.43051922231141	2.11069659289783	2.27228917626431	2.17787130221594	-1.29633191023597	0.148350350652019	1
Merged-chr18-46597670-4	chr18	46597194	46598194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010120)	promoter-TSS (NM_010120)	-10.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	8.51722079572007	8.65255669234251	8.06432166712097	8.39883962287428	8.51281253046063	8.1347000322461	-0.110124125221456	0.664444359776589	0.907585158243155
Merged-chr11-121745691-4	chr11	121745154	121746154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43227.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.82928905499727	7.88307868829382	7.62360237711822	7.93129258618634	8.1705742385209	7.93951799810955	0.333849867541522	0.141283302264644	0.502077389631641
Merged-chr11-101965180-2	chr11	101964680	101965680	+	700.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1835.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	3.95864058078363	3.55776946852362	3.37480330140509	3.99932667453764	3.70542042770768	3.85007473543036	0.625783604761767	0.302538775914351	0.699209689922543
Merged-chr4-116076530-5	chr4	116076095	116077095	+	946.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153521, intron 1 of 9)	CpG	1326.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	7.53949106817751	7.96105674753719	7.47676500030602	7.55084548527567	7.6441163280021	7.81850746254075	-0.0176213201798599	0.94486623263297	0.987875414328125
Merged-chr4-130660163-3	chr4	130659646	130660646	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3175.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	2.95693470719105	2.69734023179679	2.87009881652606	2.52996630587706	2.70446091970908	2.99995597214365	-0.457804614896782	0.557206432922848	0.864113929189159
Merged-chr1-97716706-3	chr1	97716221	97717221	+	647.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	53371.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	3.24892440607355	3.27575164042331	3.33462353621974	3.30374312265969	3.20619007432993	3.40515374683101	0.0687062961643051	0.910252429397427	0.97984424692051
Merged-chr1-88305860-2	chr1	88305360	88306360	+	857.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134252)	promoter-TSS (NM_134252)	-852.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.7104651756619	3.73991480779569	3.68589001968536	3.63501955282917	3.4026917993832	4.36827780538931	0.486338228204321	0.443321910138741	0.803766572656034
Merged-chr10-117146778-2	chr10	117146278	117147278	+	820.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	B4A|SINE|B4	1696.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	5.12846419088084	5.27461855031536	5.36864594212774	5.63733217831641	5.60242054942398	5.6571527279657	0.727565084186532	0.0284288683304796	0.201878806167816
Merged-chr9-66915599-4	chr9	66915094	66916094	+	992.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	4111.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.37488388307747	6.52333104488184	6.31581691203261	6.62521806449745	6.61787911816919	6.56251529609764	0.306098842398797	0.24616190951461	0.643286900808482
Merged-chr8-46828583-4	chr8	46828085	46829085	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	88840.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.9755437592174	5.13116350475727	5.55359338112868	5.4544685166215	5.17446001863789	5.58940017800424	0.353716730736971	0.360638384066356	0.746857777978381
Merged-chr17-36145755-3	chr17	36145281	36146281	+	945.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	CpG	763.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	4.69312001826271	4.73013215540609	4.47089870345175	4.59508809133863	4.46460231295217	4.25579002773059	-0.468134720641175	0.286333944296198	0.683634696330879
Merged-chr4-150397475-4	chr4	150396982	150397982	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	115566.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.39459750983264	4.24922855668863	4.35960231151808	4.56845428917299	4.42738922208106	4.19310967581455	0.201999501907506	0.656219580701811	0.904602622074457
Merged-chr10-57637830-3	chr10	57637337	57638337	+	823.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5856.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.92339866272351	4.68205908376823	4.97407855280877	4.35068003093772	4.44974498957491	4.75856522503077	-0.805075282196408	0.0602212342734886	0.317728010996667
Merged-chr4-146457350-2	chr4	146456850	146457850	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	RMER17C-int|LTR|ERVK	8320.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	3.65837477632438	3.83868071071298	3.77576594518732	3.62866726639221	3.63833439169934	4.28684242520237	0.378173433045075	0.517096952392522	0.84448681481211
Merged-chr3-41409444-2	chr3	41408944	41409944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83755.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.43443656246082	5.46969481411349	5.10493967301854	4.66766426658619	4.74625587831412	4.36098267877696	-1.60052069485901	0.000144109939256962	0.00384083914980567
Merged-chr7-3706611-3	chr7	3706007	3707007	+	763.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029767, intron 4 of 4)	intron (NM_029767, intron 4 of 4)	2466.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	5.63731518916536	5.62097294100083	5.91288526788742	5.50767898366875	5.91349168183338	5.88155664544494	0.11082956425493	0.738654702121817	0.93406400924634
Merged-chr8-70864111-4	chr8	70863636	70864636	+	792.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7128.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	3.19532112740174	2.9783402472176	3.10106812390703	3.09363609586691	3.15515787480281	2.92840511755151	-0.117618331685326	0.86150942869626	0.967845928536149
Merged-chr8-3620404-2	chr8	3619904	3620904	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026156, intron 1 of 18)	intron (NM_026156, intron 1 of 18)	892.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	3.60766250964291	3.9378525143711	3.66318626667634	4.31143069802503	4.38107661797283	3.85325006280898	1.37009926221391	0.0139195786894036	0.126277835105527
Merged-chr10-81130891-2	chr10	81130391	81131391	+	613.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5380.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.15681976932969	3.23119307400552	3.3772477823682	3.3439212430543	3.3342187712093	3.65224268386317	0.750641126217998	0.2248838550642	0.619791852279883
Merged-chr6-18845847-5	chr6	18845363	18846363	+	765.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-2772.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	5.70453249300135	5.8978080650057	5.74138278418538	5.55322681696365	5.60878310710899	5.2998516133786	-0.518973072654483	0.114454787124076	0.451931567741664
Merged-chr16-75876156-1	chr16	75875656	75876656	+	541.0	f0_balb.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	33110.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	5.06697759153897	4.9464153451376	5.26843672201806	4.77348912679099	4.87338767033799	5.01399487926551	-0.445895964762358	0.245132229102194	0.642381314494918
Merged-chr4-119233747-3	chr4	119233234	119234234	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042411)	promoter-TSS (NM_001042411)	-95.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	3.01393374522964	2.74521672028725	3.23214642122117	2.86937059474925	2.63453814500153	2.91123203969179	-0.980020941213395	0.193931567999228	0.581296310830689
Merged-chr7-100493331-4	chr7	100492811	100493811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-47.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	7.99007034501841	7.96293886676154	7.86643235350376	7.86893582635188	8.04721372515459	7.6197245810617	-0.109489003740873	0.637532307151293	0.89735407749672
Merged-chr11-98954175-3	chr11	98953714	98954714	+	840.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6257.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.75704517984613	5.26038361273745	5.82625557569664	6.19801169471383	5.63541429771659	6.17051827625429	0.691093215369588	0.0610606115235744	0.320267988127432
Merged-chr9-60478159-3	chr9	60477662	60478662	+	701.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32873.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	3.9683956555577	4.1434482270194	4.09794371603338	3.71203344354685	3.67083974104745	3.93146944414589	-0.9528622076346	0.0656708054634184	0.334332867168387
Merged-chr17-5514563-2	chr17	5514063	5515063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	21963.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	2.5930112360557	2.45692450236511	2.67715562153735	2.50508483225601	2.60579167178608	2.56384021829472	-0.0859992733449708	0.911845714452446	1
Merged-chr1-74387034-4	chr1	74386531	74387531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013612)	TTS (NM_013612)	-4578.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	7.53632338706295	7.39229783385171	7.31311299532201	7.79019109506951	7.58765111865695	7.61031848548049	0.356537028520088	0.121724893967905	0.466750459782554
Merged-chr12-3892891-4	chr12	3892381	3893381	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	1137.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.94753472594869	7.11337372332255	7.23041631865767	6.95724261082001	7.02331672718746	6.8151936021192	-0.238434628680115	0.340459991527436	0.730173453949955
Merged-chr16-17718030-4	chr16	17717527	17718527	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	4873.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	3.81810247482337	3.98741871892767	4.30234155099399	4.46464419280344	3.91643261052731	4.41037556131277	0.660490046763119	0.214283717031678	0.607446165658035
Merged-chr11-50245435-4	chr11	50244932	50245932	+	945.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6900.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	5.45952499843788	5.27681699473238	5.87581628226949	5.90666635409312	5.66602208691328	5.81972557573121	0.462646051165534	0.185888671700773	0.57022763483421
Merged-chr10-21847201-4	chr10	21846725	21847725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34959.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.22029533301988	6.31482276854149	6.67079071454076	5.9128607557169	6.15680700401363	6.49382878396862	-0.341572972124058	0.286079409994412	0.68342985932029
Merged-chr10-117897378-4	chr10	117896869	117897869	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-28090.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.5486756971284	6.3370958707572	6.32048854342281	6.36998471116205	6.51719421639817	6.14711594801895	-0.0727312520615159	0.79930609633002	0.952248176414355
Merged-chr11-115077615-2	chr11	115077115	115078115	+	725.200012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13816.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	5.07069914026284	4.93528895798745	4.65995101129827	4.42238998730723	4.47257998618981	4.26761793049918	-1.21683448655382	0.00519228474038446	0.0627745369396644
Merged-chr4-155784261-4	chr4	155783795	155784795	+	900.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033394, exon 2 of 2)	exon (NM_001033394, exon 2 of 2)	1579.0	NM_001033394	320587.0	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	3.22846567295393	2.95169571175579	3.1335373821971	3.11085205846347	2.81107712306429	3.02912138661385	-0.560090096077037	0.419364260856734	0.788977038405131
Merged-chr17-35046160-2	chr17	35045660	35046660	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013600, intron 1 of 23)	intron (NM_013600, intron 1 of 23)	462.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	4.31646166359713	4.16383328352335	4.17646023129719	5.07601972150537	4.81900112627401	4.66287320791096	1.58830752852329	0.000337483090894007	0.00767683697352951
Merged-chr6-146120343-4	chr6	146119854	146120854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	186232.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	4.07326416499548	4.1741764125964	3.87396425998173	4.14097180096634	4.29967592497	3.9457429699426	0.262973833036704	0.602467832594922	0.882349532183277
Merged-chr15-100422215-3	chr15	100421685	100422685	+	877.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	870.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	7.95831185497108	8.0339099176842	7.31461924680012	8.07272919258483	8.15911129205534	7.81558889367913	0.298755640250769	0.283749624613946	0.681452732636412
Merged-chr5-92126979-2	chr5	92126491	92127491	+	688.0	f0_balb.idr|f1_balb.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10734.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.55273995191451	4.42307316689579	4.64443005274598	4.2634305555619	3.93987194436503	4.43494898807952	-0.851246463079672	0.0729629955981301	0.354952346686694
Merged-chr9-32517489-2	chr9	32516989	32517989	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	23963.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.99529104266295	5.62814932319089	5.877915388523	5.87737058426334	5.9767079247145	5.84078649558832	0.112221301888089	0.719730555688405	0.927946685343569
Merged-chr12-83703010-2	chr12	83702510	83703510	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	intron (NM_001362271, intron 3 of 11)	14447.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	5.75364822140143	5.99348777867255	5.80069058322805	6.07516650014578	6.32854616638854	6.18751450801949	0.599078784856577	0.045526919553307	0.269392968439167
Merged-chr2-46360507-4	chr2	46359994	46360994	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	663889.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.93353247456282	4.64533936571396	4.8658804200923	4.78579607381372	5.14089731490998	5.10475846563684	0.447111522985153	0.262393271528068	0.660372008266514
Merged-chr4-145242937-4	chr4	145242461	145243461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3909.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.14075850905803	6.25763312734484	6.73127174108067	6.57676853657521	6.51003207669115	6.66941039760329	0.313871749995934	0.294525484819956	0.69132772549011
Merged-chr7-120901847-4	chr7	120901346	120902346	+	920.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 17 of 17)	ORR1E|LTR|ERVL-MaLR	-15898.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	4.09216240780127	3.94958284244481	4.0696720925014	3.72957099779025	3.87537621424061	3.94834360246666	-0.565952003963378	0.264068871201217	0.661946214222778
Merged-chr13-43752581-4	chr13	43752042	43753042	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57D|LTR|ERV1	-32570.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.91654115761574	5.24012809757877	4.86529930773971	5.12457717848633	4.89225089549798	4.81268469379704	-0.16010239336715	0.686628869512981	0.916801348262875
Merged-chr10-128132226-2	chr10	128131726	128132726	+	680.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	39443.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	5.17352294261282	4.95169234241067	4.81767552537256	4.84961208861651	4.98140435531696	5.40805072332029	0.201566704043674	0.62085885494104	0.890374581650335
Merged-chr7-130819022-4	chr7	130818533	130819533	+	941.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081038, exon 12 of 16)	exon (NM_001081038, exon 12 of 16)	44964.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	2.69122325055817	2.64886549787368	2.65848687631335	2.7428439974824	2.59948338857396	2.79345406694633	0.236403231811855	0.749623434335922	1
Merged-chr7-4685131-4	chr7	4684620	4685620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360629)	promoter-TSS (NM_001360629)	-139.0	NM_024172	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	6.87512289335527	6.86786159593714	7.1074173990083	6.91064333385127	6.88158187098368	7.09145489674347	0.0165712114957067	0.947405221924038	0.988008807662239
Merged-chr12-104131610-1	chr12	104131110	104132110	+	606.0	f0_balb.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3614.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	3.24450528791692	3.27137576828808	3.2735774216995	3.48273091990806	3.17785128891921	3.28793992343723	0.231447815913022	0.709003862418449	0.923861312746116
Merged-chr5-54040779-1	chr5	54040279	54041279	+	553.0	f0_balb.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	42256.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.63250133884513	3.6688871062363	3.7645280362699	3.68963858453613	3.62959768022518	3.9293883369383	0.204044562778434	0.707048808460869	0.923203450040592
Merged-chr2-68907840-4	chr2	68907359	68908359	+	947.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	L1MB3|LINE|L1	46418.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.96917683728672	3.37749462795292	3.36165551963425	3.74716751008408	3.38576358038385	3.49631705324829	-0.194245336981634	0.763850065715542	0.941838906550437
Merged-chr12-85525621-2	chr12	85525121	85526121	+	811.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	51731.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.52859710614421	4.11914627952709	4.57824043514912	4.31966602848005	3.84783471252381	3.9238320045178	-1.01885139341946	0.0513680645687953	0.288975317195614
Merged-chr10-8754416-6	chr10	8754078	8755078	+	777.152771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	131492.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.73694557889796	4.64042993741182	4.83234635262203	5.05329865593507	4.52469435284944	4.62225486094356	0.0467810236970296	0.91337739035417	0.980606122501004
Merged-chr10-128747818-4	chr10	128747323	128748323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	-56.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	8.02626199722262	8.31682985005763	8.0436211129423	7.98316193336388	8.34762180900617	8.16912839540123	0.0555246972601524	0.811914482013495	0.955352898527596
Merged-chr14-55757785-3	chr14	55757262	55758262	+	744.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009894, intron 2 of 4)	intron (NM_009894, intron 2 of 4)	662.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	4.09199950137264	4.03443325240813	3.92167218247289	4.36201880243999	3.91969311196651	4.14123582371298	0.36726328781926	0.466621374127588	0.817586753758551
Merged-chr9-109876115-6	chr9	109875642	109876642	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007658, exon 1 of 15)	exon (NM_007658, exon 1 of 15)	563.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	6.62423635990994	6.78392143968618	6.68911806151932	6.45418829415618	6.24748957496576	6.56882380110583	-0.452245749937931	0.0933986778064677	0.407088157154892
Merged-chr7-98534690-4	chr7	98534203	98535203	+	881.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40481.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	3.03759064616627	2.8757662946372	2.63841404395482	2.91667987147199	2.9836804591701	2.97347541850112	0.439907485430348	0.555979101165602	0.86353030537374
Merged-chr18-70568245-4	chr18	70567769	70568769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311071)	promoter-TSS (NM_001311071)	-23.0	NM_001311071	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	5.438518756979	5.12682757109731	5.21123206660084	5.69057686862977	5.1839610409653	5.34100666049421	0.301370632533879	0.42014036896964	0.789517374403799
Merged-chr11-59192495-1	chr11	59191995	59192995	+	564.0	f1_balb.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	-543.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	5.43258203104448	5.35941103055022	5.54133788323602	5.50159707972033	5.98576562429459	5.81321586494045	0.647070459541029	0.0561078554254261	0.305078901799573
Merged-chr9-120885194-3	chr9	120884699	120885699	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30051.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	3.4844766524981	4.01177573719608	3.89059731212275	3.23002820254796	3.02225134787205	3.39408729603611	-2.37417185641788	0.000443695373706601	0.00956472067337451
Merged-chr6-99490050-4	chr6	99489550	99490550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	30943.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.76385797252866	4.55197480849252	4.2602999435735	4.53602597706882	4.6413811284561	4.68428957500694	0.162252487945586	0.714381781723756	0.925873245006649
Merged-chr15-97760145-3	chr15	97759687	97760687	+	883.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177810, intron 6 of 27)	intron (NM_001177810, intron 6 of 27)	7479.0	NM_001177810	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	3.04436998833777	2.87882168103097	3.1244647181059	2.72301914554838	2.59089227974848	2.65341744821095	-1.96966506373445	0.0107677049259853	0.105855291999219
Merged-chr1-170959976-4	chr1	170959484	170960484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010187)	TTS (NM_010187)	16087.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	4.81199273547103	4.66129952112752	4.97225810981595	5.02623508215354	4.81940120995311	5.16677843116632	0.418313399477733	0.291814597828048	0.689235268138963
Merged-chr7-136377957-4	chr7	136377465	136378465	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	-28550.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.13168743063232	4.13339858812296	4.39002490823064	4.50939903301757	4.81096204695196	4.91148009652552	1.36002394268271	0.00246266284665091	0.0362999557385525
Merged-chr2-120129983-2	chr2	120129483	120130483	+	885.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	24592.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.24334237260536	5.40042128267388	5.99569528921342	5.30371961299667	5.44541137293092	5.30501248180443	-0.419688749010062	0.278421711119748	0.675623815920472
Merged-chr4-127077471-4	chr4	127076970	127077970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285885)	promoter-TSS (NM_001285885)	87.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	6.80688939794716	7.06540013410002	7.18347411903371	7.24252303927508	7.14431833320816	6.97165664884711	0.161043058283326	0.530597523401293	0.851247637658821
Merged-chr1-91757570-3	chr1	91757044	91758044	+	812.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43917.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	5.18678909047766	5.58428198004358	4.97811963286139	4.89125521493846	4.37505103145979	4.49485228176635	-1.48640738066507	0.000808547430281166	0.0153007993129032
Merged-chr10-117860534-4	chr10	117860042	117861042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14568.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	9.31320504586359	9.36795607777697	8.77385595843506	9.05150613129445	9.53128150025556	8.84716111814527	-0.000679493107515178	0.99804668359534	0.999579683478894
Merged-chr11-115413383-4	chr11	115412893	115413893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347645)	TTS (NM_001347645)	6526.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	8.63163583616886	8.68255600663304	8.28341050343352	8.31520983856058	8.81605588522278	8.1193452008803	-0.121488598299442	0.653340320994671	0.903329521049756
Merged-chr9-53667507-4	chr9	53667009	53668009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027807)	promoter-TSS (NM_027807)	-2.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	8.54316706467022	9.02154000889163	8.4677203356951	8.52609325609807	8.63898676553832	8.1828665744609	-0.334685704670362	0.199229137049527	0.587623906831272
Merged-chr5-139382929-4	chr5	139382393	139383393	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	2254.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.33336331321145	7.5881766614694	7.35395117903292	7.00914496769679	7.28398782365154	6.88386008307411	-0.524617022789279	0.0416271244199678	0.255078412897613
Merged-chr17-24937044-4	chr17	24936512	24937512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163447)	promoter-TSS (NM_001163447)	-35.0	NM_013931	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	7.06976119951953	7.34077348681612	6.96593342290616	7.26859506992559	7.52180403233165	7.33897880258908	0.359807016725556	0.154897405049682	0.524183835210924
Merged-chr5-143269444-3	chr5	143268946	143269946	+	724.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017467, intron 1 of 6)	intron (NM_017467, intron 1 of 6)	576.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	4.13285369636684	3.90764910431119	4.09139800671539	3.82286805992538	3.64210184121375	3.87309822279352	-0.846218924653128	0.103560740358186	0.429073449371306
Merged-chr3-116205653-4	chr3	116205136	116206136	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47848.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	6.35143445170009	6.58463750009607	6.43260864516462	6.29314152634707	6.32875752027272	6.00610870149687	-0.384199489896753	0.179536829529133	0.561093620137974
Merged-chr19-28990388-4	chr19	28989887	28990887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302443)	promoter-TSS (NM_001302443)	35.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	7.18448977545393	7.17881158391695	7.23321667183786	7.22293762243809	7.26021197897845	6.98277150201011	-0.0423181410267121	0.859798363173063	0.967435965660262
Merged-chr8-46819954-2	chr8	46819454	46820454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	MT2B1|LTR|ERVL	80209.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	2.6991287274373	2.59338118045645	2.56622881443567	2.71828792830447	2.54643446599061	2.82738399692609	0.408683073912803	0.592681147669082	1
Merged-chr8-3225911-2	chr8	3225411	3226411	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	53706.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.6815757473921	3.78701741346027	4.23132021484841	4.01198103793323	3.81537383033575	4.37686251034005	0.494127028413499	0.379017686203358	0.761579017024633
Merged-chr4-155894723-1	chr4	155894223	155895223	+	576.0	f1_balb.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2848.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	4.89263508576369	5.06746390059326	5.21908172232583	4.0178622122239	3.51523547926346	4.26895380669421	-3.04624418883428	7.17406231512764e-08	5.27797857751671e-06
Merged-chr13-21753806-5	chr13	21753199	21754199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178201)	promoter-TSS (NM_178201)	213.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	7.19446121404183	7.27457945980222	7.22838499087349	7.29807393256895	7.67406419192239	7.50291651569005	0.402044053455629	0.0953237164054119	0.411523077444304
Merged-chr5-111178734-4	chr5	111178235	111179235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	ORR1E|LTR|ERVL-MaLR	-151962.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	8.13672217639998	8.56771435526287	8.09118433124323	8.29473134773285	8.33599227736629	7.83808442953624	-0.149799380374677	0.568876542129672	0.868767898077656
Merged-chr7-133710508-2	chr7	133710008	133711008	+	780.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360164)	promoter-TSS (NM_001360164)	-61.0	NR_153415	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	2.82973811400826	2.62273023538993	2.99820461146031	2.87350679280295	2.41192294998878	2.71207009975282	-0.746436965041502	0.363775934317724	0.74933829766087
Merged-chr16-92880911-2	chr16	92880411	92881411	+	902.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54837.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.68485308712726	2.73288086942309	2.80740910121241	2.68075891181763	2.86282862621436	2.56149331714127	-0.136954003313356	0.857631382081715	1
Merged-chr13-81110353-4	chr13	81109842	81110842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	146268.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.66562127442009	6.46621282022862	5.95287232684161	6.26625523333718	6.24888076445883	6.18149350971897	-0.288339062200142	0.361373579661326	0.747285684599917
Merged-chr13-6889631-4	chr13	6889160	6890160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-240889.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	4.50068312754231	4.64461352070652	4.60925343968265	4.81900796768533	4.32568459008363	4.82720230415146	0.19683941187376	0.658112657577622	0.904937992416562
Merged-chr5-138172896-1	chr5	138172396	138173396	+	544.0	f1_balb.idr	intron (NM_021392, intron 3 of 14)	intron (NM_021392, intron 3 of 14)	875.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	3.82339041165997	3.72862414598271	3.70050799806648	3.57150762635801	3.80259161360733	4.01117518445723	0.157123102091436	0.774038207696179	0.94425470583833
Merged-chr7-133776784-4	chr7	133776292	133777292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	11.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	6.12553638010866	6.06252362724331	5.97814267793394	6.23116609753967	5.97168837641547	5.8132602037965	-0.0652015707427564	0.829780557488836	0.960134151531511
Merged-chr10-40499501-4	chr10	40498982	40499982	+	976.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70880.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	6.17818631600211	6.52577251955486	6.08782933737979	5.96726775777183	5.94416419050776	5.74859224077992	-0.666415605187475	0.0316053999776393	0.215417932612992
Merged-chr6-97368301-3	chr6	97367806	97368806	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	90980.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.67651970902132	3.74420317230891	3.72412584426242	3.65227008598191	3.67518530535214	3.52300074685107	-0.311696424643415	0.568375728680045	0.868549528189122
Merged-chr3-138531750-4	chr3	138531252	138532252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	4484.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	5.30505800243091	5.3407553061439	4.83168921582893	5.44958359908719	5.35393128568139	5.33840744539209	0.372029566492694	0.321153764629464	0.714758187580158
Merged-chr16-92864304-4	chr16	92863807	92864807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38233.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.68394484262167	6.36735021831663	6.30026128772282	5.98757478222683	6.1417467952499	5.93531177251745	-0.726419911101967	0.0143482436967399	0.128825906629184
Merged-chr6-128899499-2	chr6	128898999	128899999	+	702.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8375.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	2.76490959758757	2.56588403334926	2.76000986583875	2.7224765388804	2.52207291090611	2.6467379616421	-0.374296656038915	0.623511618786254	1
Merged-chr15-76825720-4	chr15	76825237	76826237	+	902.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7567.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	3.08477726345709	2.77056766712508	2.97961872512668	2.84490817240658	2.88552606022179	2.99294235371651	-0.212332176999079	0.763152213403294	0.941711234953909
Merged-chr6-84796391-3	chr6	84795841	84796841	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 18 of 21)	intron (NM_177077, intron 18 of 21)	-202433.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	5.84529784852097	5.67333758998751	5.33450659957019	5.48129824998979	5.42703319068468	5.61011138387254	-0.272468939204615	0.428461760032389	0.795329632998148
Merged-chr6-94274126-1	chr6	94273626	94274626	+	885.0	f0_balb.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	9791.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.43383406114079	2.45247415721186	2.5112348431355	2.17643508810795	2.12074491158613	2.52341423184879	-1.24367467684646	0.172277435468364	1
Merged-chr9-108691562-4	chr9	108691054	108692054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-589.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	7.89424120319079	8.26604260888539	7.9420262465286	7.58326540591134	8.29511793491221	7.93629046123949	-0.0986021031417707	0.721274827727892	0.928451291671431
Merged-chr14-66185059-4	chr14	66184562	66185562	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	28762.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.9243531996247	5.20188961179613	4.79481069986047	6.07657390307612	5.85508130501015	5.4294535972921	1.59504596382866	4.36716111262369e-05	0.00141174336386632
Merged-chr17-71310102-3	chr17	71309625	71310625	+	741.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	886.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	6.04245422647854	6.42688110939661	6.16474324793328	5.261424921517	5.07901036738527	5.29604470219868	-1.88363311723755	1.38743123792136e-08	1.21393668186078e-06
Merged-chr9-40701890-3	chr9	40701386	40702386	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	RLTR12D|LTR|ERVK	15922.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.18724177910814	5.09717170096442	4.98849736127692	3.77853785956302	3.57562681035486	3.92160822505458	-4.12923945149707	1.17005188537804e-12	2.2227780200579e-10
Merged-chr5-64862086-2	chr5	64861586	64862586	+	648.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58563.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.87561948553286	4.67721733258661	4.94307091233029	4.6976662659448	4.72465572069571	4.90261796094644	-0.134244549745536	0.736281328909657	0.933099240232035
Merged-chr11-77688002-3	chr11	77687493	77688493	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	1854.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	6.4295394553092	6.59685129261408	6.53620843798324	6.26532244742754	6.26364827663954	6.6600813653459	-0.201782104637571	0.477026241307442	0.823083930961962
Merged-chr12-111434514-2	chr12	111434014	111435014	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8147.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.37522795511701	3.20678507204802	3.43222481650548	3.38456506689587	3.31392918844726	3.39397561775569	0.0990455839759188	0.8693896151978	0.969788171765313
Merged-chr17-94834311-2	chr17	94833811	94834811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045964, intron 1 of 3)	intron (NR_045964, intron 1 of 3)	488.0	NR_045964	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	4.98577053871128	5.22084288869757	5.77603189635057	5.33103238130877	5.45069074426223	5.74430460529484	0.299948734239157	0.45567954523342	0.811093409198074
Merged-chr11-60114412-3	chr11	60113902	60114902	+	813.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	9389.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	5.1300331721502	4.9000680881959	4.82537749125999	4.80076814234907	4.59861745660392	4.81452854334274	-0.519003814513768	0.193159714683838	0.580302074097341
Merged-chr11-120709049-2	chr11	120708549	120709549	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 14 of 15)	intron (NM_026877, intron 14 of 15)	4718.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	1.80227768056518	1.7740376602834	2.06583860336638	1.67602150663999	1.63901733178913	1.81052294559745	-1.68379095323555	0.118415608332055	1
Merged-chr10-70287918-4	chr10	70287415	70288415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42639.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.72388379958987	5.87339955124637	5.31479181121203	5.81233978984494	5.74919571312889	5.44710425593818	0.0269980762712265	0.93912443848428	0.986604659958455
Merged-chr18-60524355-1	chr18	60523855	60524855	+	857.0	f1_balb.idr	Intergenic	Intergenic	-1799.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	6.02871635592036	6.4535421064296	6.76725343278137	5.99509267750778	6.15654557870843	6.3662730332325	-0.441207185442745	0.181348785206757	0.563676583728803
Merged-chr10-34417696-2	chr10	34417196	34418196	+	626.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	MIR|SINE|MIR	855.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	5.37025853177353	5.55839391536111	5.4627466963607	5.79966485006048	5.81258885346063	5.74848107600409	0.597181100079127	0.0594783472139371	0.31572372379732
Merged-chr12-83949956-4	chr12	83949461	83950461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	-647.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	6.2898956315013	6.20487608626813	6.36413394105612	6.01194345752756	6.35166949122593	6.31019944127117	-0.0802210483259603	0.78047036934627	0.9460578705437
Merged-chr1-93817939-3	chr1	93817447	93818447	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 7 of 7)	intron (NM_025454, intron 7 of 7)	-7293.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	4.07272676803671	4.11817089873876	4.2115755287631	4.10971398633162	3.94324566582701	4.04824775947424	-0.289313784801314	0.547399120615276	0.859266262227511
Merged-chr16-10989593-2	chr16	10989093	10990093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	3528.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.4977684342995	4.98176985830078	5.27781587954108	4.88724937537402	5.18840487567936	5.19088045321984	0.311672112638021	0.47404083638813	0.821247104271739
Merged-chr5-77463776-3	chr5	77463274	77464274	+	878.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1714.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	2.35756491551596	2.48018053522565	2.59905340914917	2.31836201749524	2.25398189004528	2.42410275866716	-0.970652558456046	0.246315790241026	1
Merged-chr16-10488055-3	chr16	10487536	10488536	+	938.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-142.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.52423251432108	4.51668762519215	4.46513423266257	4.86548808079159	5.04353774468478	5.03659087529484	1.10956646345277	0.00557267444173034	0.0661659667447914
Merged-chr6-129423880-4	chr6	129423378	129424378	+	956.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172732, exon 6 of 6)	3' UTR (NM_172732, exon 6 of 6)	15016.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	4.17939423508565	3.8582417388723	3.84582013860454	4.20654828717105	4.03141892617382	4.165532618161	0.454209015234525	0.36936965538818	0.754116709983023
Merged-chr6-72748649-4	chr6	72748136	72749136	+	883.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	40409.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	3.27219373773909	3.25561145408182	3.50449502208757	3.65222749546316	3.5736668621456	3.82556984281349	1.26513962528773	0.032234011479908	0.218144162822909
Merged-chr17-5603964-2	chr17	5603464	5604464	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MLT1A|LTR|ERVL-MaLR	111364.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.86816692684915	3.46056803788866	3.78178727942388	3.40291452814093	3.1482548711636	3.2518763141514	-1.70083857150991	0.00724348053300782	0.0801057320827371
Merged-chr7-24443200-1	chr7	24442700	24443700	+	1000.0	f0_balb.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	2482.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	4.63514014300193	4.91360761301604	4.99324771618984	4.47055677979124	4.09122199855348	4.58962223803652	-1.12903135175262	0.0132902461672435	0.122476751846967
Merged-chr8-3500466-4	chr8	3499973	3500973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-46.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	7.18179662306815	7.20725281292344	7.17198738415585	7.2851603628162	6.7801524027835	6.59253466039594	-0.394200173182433	0.169232855615984	0.545943761877053
Merged-chr8-25062695-2	chr8	25062195	25063195	+	732.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 4 of 11)	intron (NM_031257, intron 4 of 11)	-23733.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	5.28908231066722	5.50234922697386	5.70013218949118	5.71817948064366	5.91526410203271	5.78713149983609	0.584698202569868	0.0758187113968754	0.362539808419832
Merged-chr1-30873849-4	chr1	30873319	30874319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10563.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	8.42015967704812	8.18537884139182	8.13244312362209	8.3893584660525	7.6015383127652	8.14093465664359	-0.238458349392712	0.389962310402757	0.769401696657453
Merged-chr12-98290661-4	chr12	98290182	98291182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	22047.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	6.73121358616861	6.84024497072531	6.7937415218348	6.79355949195966	6.78295454177011	6.57460194782346	-0.0958833297754423	0.705864262634503	0.922834459892351
Merged-chr2-129603559-2	chr2	129603060	129604060	+	898.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8098.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.51185587868805	5.32179018071066	5.36163019419195	5.78066701907069	5.57195351480694	5.39398503515484	0.37036357906279	0.275857172607349	0.673242318833586
Merged-chr9-55170940-4	chr9	55170460	55171460	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	20877.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	4.42567677587062	4.46110590444017	4.71666930878695	4.26875260104754	4.17594630307229	4.25452196134695	-0.788716394128442	0.0798312105625232	0.373618355320868
Merged-chr5-21218113-4	chr5	21217592	21218592	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	Tigger17a|DNA|TcMar-Tigger	31825.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.22719816482046	4.36676074394992	4.46935222337492	4.35021642626419	4.06581435704233	3.87211802628446	-0.648728115763097	0.191015247647056	0.577558823376959
Merged-chr18-50052856-3	chr18	50052342	50053342	+	757.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134131)	promoter-TSS (NM_134131)	-440.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.73719663632418	5.4636134710402	5.68103112348855	5.64367222703025	5.29900455506147	5.55393970725136	-0.245669938586069	0.469484683992008	0.818977178978635
Merged-chr2-160268099-4	chr2	160267597	160268597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59397.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.79004479256084	6.83352108814755	6.74334403526247	6.67678975217921	6.74609839148605	6.87611944820039	-0.0429529786314601	0.863731831723762	0.968269312109804
Merged-chr8-117483331-2	chr8	117482831	117483831	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14944.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.54650965165245	2.47414712591309	2.7635224722629	2.57504229361178	2.43241939287301	2.77746012466173	0.00816612199188154	0.991804409163819	1
Merged-chr10-44511227-3	chr10	44510732	44511732	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52484.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.05748297625173	2.79519224827712	2.88584545368736	3.08611689983042	2.80551362476762	3.13747702797634	0.438863563176887	0.537967978864747	0.854944075396138
Merged-chr3-27191203-2	chr3	27190703	27191703	+	906.4375	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	ORR1B2|LTR|ERVL-MaLR	8199.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	7.17111616468424	7.24163417724243	7.02835162114601	6.6743896632317	7.00687270803454	6.73294920944953	-0.506664662152542	0.0500224238164458	0.284813592508473
Merged-chr14-73140737-4	chr14	73140210	73141210	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1800.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.09746457631095	7.46339929486834	7.41447512624329	7.14212138318071	7.47045924160018	7.03110502526539	-0.14159769844127	0.596308824393564	0.879909519357116
Merged-chr5-109690891-4	chr5	109690410	109691410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131917.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.13498446728547	5.24186430421564	4.987354857941	5.08274216453517	5.20409092017519	5.46644524767845	0.243316431393715	0.510096855779287	0.840695141327821
Merged-chr6-66537493-4	chr6	66537015	66538015	+	915.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	2294.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	3.70063647996502	3.84710411234605	3.50150684731956	4.02218866444886	3.98485665323055	3.85697227950931	0.821508397129556	0.132961487283682	0.487871386598783
Merged-chr1-131096995-4	chr1	131096492	131097492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	CpG	851.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	8.92288415519132	9.05155218977565	8.71013999892248	8.70092068340738	8.96838422587237	8.70259835445603	-0.145480442981908	0.507114326449041	0.838836031154639
Merged-chr13-30696092-4	chr13	30695600	30696600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	36041.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	6.52563431343755	6.80790040121406	6.43789554677417	6.41433395034805	6.50217334399279	6.42195807843791	-0.256231053006748	0.351785781104741	0.739445861272404
Merged-chr1-95613556-3	chr1	95613065	95614065	+	958.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	54029.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.00525065296637	3.29083086130522	2.79616382807739	2.9575130130465	2.94946885113839	3.06139991231488	-0.294578186487894	0.683153402732759	0.91523316791368
Merged-chr8-122948863-4	chr8	122948334	122949334	+	801.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	93450.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.0068537587343	4.68527194082869	4.69139613488774	4.76028725887498	4.69042098873807	5.08178027862675	0.0802926420830316	0.847100834646036	0.96415075979756
Merged-chr1-156473526-1	chr1	156473026	156474026	+	907.0	f1_balb.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	802.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.76376797932772	7.80521034708488	7.3748878645177	7.85421983000658	8.02882469630318	7.28758016883395	0.147996152278484	0.607210180695976	0.884448083779426
Merged-chr6-29736204-4	chr6	29735675	29736675	+	885.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176996, exon 1 of 12)	exon (NM_176996, exon 1 of 12)	678.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	5.05240136298923	4.65333178184834	4.42818867010156	4.74023809186927	4.47312896104135	4.30254559996535	-0.531975798885656	0.257625343568616	0.655049338049118
Merged-chr7-16582408-4	chr7	16581922	16582922	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31402.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	5.09028525051782	5.39422687046263	5.18422439433352	5.29424326792721	5.08681129165526	5.28039107965316	-0.0332337372794538	0.92690124982623	0.983578869536024
Merged-chr3-88746444-4	chr3	88745955	88746955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26144.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	6.58585901589524	6.41550777616596	6.11932362724893	6.45110633906859	6.75609273696282	5.75449489112617	0.0115537945441244	0.974903312516082	0.994382735882691
Merged-chr5-135931790-2	chr5	135931290	135932290	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	2851.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	3.75203753182775	4.07420168851231	3.73211096152483	3.75768251200717	3.628334445754	3.95353873697466	-0.288635904929999	0.59888935147389	0.880844471295403
Merged-chr13-41583863-4	chr13	41583288	41584288	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEb|LINE|L1	-22428.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.39367991349442	6.67164427549568	6.63743160144964	6.80842737957457	6.84011559359322	6.66345414916657	0.326146590902499	0.216257058163734	0.609708172523565
Merged-chr1-106695953-4	chr1	106695449	106696449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	ORR1F|LTR|ERVL-MaLR	18341.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	4.12346992724903	4.39066719441856	4.24027441885101	4.16431691811642	4.57507466426103	4.44069617661516	0.396505087529443	0.400283518086621	0.776454470648814
Merged-chr11-20741078-4	chr11	20740580	20741580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	CpG	476.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	8.63850149992863	8.7405405309752	8.67506396776641	8.7632615539562	8.75095828913082	8.85579625395024	0.142500319608721	0.464870673330616	0.816622521723857
Merged-chr17-73973734-4	chr17	73973216	73974216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23520.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.40490484365595	5.72084576123604	5.423140910581	5.89311080061279	5.80984792618181	5.77092952244785	0.538818215376695	0.0979053032924412	0.417267926999014
Merged-chr7-25280296-2	chr7	25279796	25280796	+	741.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-1883.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	5.09370276391621	4.79078418054546	5.00022011632614	5.00753141389558	4.78953139353402	5.06460104472086	-0.0337505709578422	0.931004890259753	0.984748096853363
Merged-chr16-15890130-4	chr16	15889629	15890629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007679)	TTS (NM_007679)	2843.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.86499481291309	6.09456983702281	6.22541161635408	6.01501402994912	6.35733308492668	6.36137551547995	0.324400830675215	0.286447848395217	0.683720931974546
Merged-chr10-24490682-4	chr10	24490176	24491176	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104766.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.45205584690798	3.33385265188309	3.31691783305899	3.70622265891	3.62395276491032	4.09379361523098	1.56774313211665	0.0092213110262094	0.095152403880236
Merged-chr2-52378605-4	chr2	52378101	52379101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-39803.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	5.21566864971935	5.42275767302248	5.00019251457941	5.70457042894976	5.86045038550003	5.324204681668	0.813788428333089	0.0292240315351422	0.205429856887396
Merged-chr2-57116785-4	chr2	57116289	57117289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	-1751.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	5.84649506746988	5.42101467434428	5.45005007481814	5.49352962128578	4.91579942234228	4.78852264799634	-0.945183072721298	0.023245443835266	0.178432369985684
Merged-chr5-102502600-4	chr5	102502121	102503121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	21230.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	5.27542616650046	5.22627826006224	5.00707702628728	5.04286915508781	5.10106374614459	5.27444695446529	-0.0966129999273177	0.790759980399641	0.949596715963246
Merged-chr13-34200496-2	chr13	34199996	34200996	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	37532.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	3.15421549251967	3.03991557789417	3.06309299355865	3.38428184426739	3.75255811401933	3.70207657672502	2.18265467865305	0.000915929888846119	0.0168314253955627
Merged-chr7-19311043-2	chr7	19310543	19311543	+	871.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-998.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.15214937484147	5.18588605183238	4.802660292885	5.3302131905767	5.01457794911928	4.9504101895849	0.0887866383083205	0.821069612244862	0.957942312428027
Merged-chr2-129083712-4	chr2	129083201	129084201	+	911.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 5 of 6)	intron (NM_027192, intron 5 of 6)	-17295.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	3.1399791424135	3.26462088416294	3.10191430981544	3.10889712002981	3.09993531616241	3.17422699905071	-0.209003674796264	0.744117419445005	0.9358862398815
Merged-chr9-118864298-2	chr9	118863806	118864806	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	L1MA5|LINE|L1	-62230.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.88639370374545	3.07930411742848	3.17694376847841	2.82675780496578	3.01067246569077	3.19296421827533	-0.157085027040325	0.821541003946148	0.958023303204974
Merged-chr12-86078603-4	chr12	86078102	86079102	+	958.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009368, exon 1 of 7)	5' UTR (NM_009368, exon 1 of 7)	439.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	5.71859130382079	6.04440573946825	5.63875648906483	5.56591715715711	5.90519787575673	5.58661481837614	-0.207534740186343	0.54035312751077	0.85632302227606
Merged-chr14-54756107-2	chr14	54755619	54756619	+	607.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25767.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	7.03272779795365	6.84665446483691	6.99317498697051	7.1552005423892	7.49491678051942	7.5062882067336	0.656234903073763	0.00895174643839123	0.0931886547786385
Merged-chr2-124657563-3	chr2	124657044	124658044	+	959.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199241, intron 8 of 17)	intron (NM_199241, intron 8 of 17)	3963.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.51885374359444	4.65934581855056	4.98964075260831	4.78428152609108	4.82484900862717	4.84598953962276	0.21440297486004	0.603286504294178	0.882544198306255
Merged-chr9-50528043-1	chr9	50527543	50528543	+	707.333313	f0_balb.idr	intron (NM_011220, intron 1 of 5)	intron (NM_011220, intron 1 of 5)	598.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	6.18553334590847	6.31288858310517	5.9515221009608	6.30528355590181	6.34599549288797	5.98859174926231	0.108522691235132	0.719408285776685	0.927854369416514
Merged-chr15-34082749-4	chr15	34082249	34083249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026002)	promoter-TSS (NM_026002)	30.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	8.23618198577413	8.34388295041635	8.22111392668773	8.15756972773429	8.22511006816083	8.16530811950288	-0.120494812201597	0.554870473351737	0.862989905297353
Merged-chr7-73539200-5	chr7	73538653	73539653	+	938.320007	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_037569)	TTS (NR_037569)	2593.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.67293850046119	7.8019990177554	7.05006853969632	7.65073480943906	7.9109328175415	7.29524401229551	0.135284741339512	0.657981875904844	0.90491811725712
Merged-chr7-99143395-4	chr7	99142873	99143873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.28563131108866	7.40625823118497	7.30544129237994	7.36757551693557	7.69553279431973	7.63645399961692	0.35370069904393	0.135503479070427	0.492034627383466
Merged-chr19-8803046-2	chr19	8802546	8803546	+	861.6999509999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098237, exon 2 of 2)	exon (NM_001098237, exon 2 of 2)	516.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	5.42830929610351	5.25790453820558	6.09286622601282	5.94873676924024	5.8202091986583	5.82534480454617	0.424253474403963	0.259689172127712	0.657244171743244
Merged-chr10-84338943-4	chr10	84338435	84339435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101536.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.84759913387132	6.79803668247857	6.74965725821339	6.93374261687325	7.04864489643252	6.86933617395052	0.241960933273625	0.325287164638514	0.718077478450679
Merged-chr4-59783433-3	chr4	59782936	59783936	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013577, intron 1 of 4)	CpG	419.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	7.57241804047867	7.8123786470763	7.43789274674884	7.49246883382181	7.63438820492721	7.16285365915462	-0.244818821336759	0.34454418251993	0.733150745942016
Merged-chr8-120683723-3	chr8	120683222	120684222	+	852.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15402.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	4.25935926406728	4.09905423317586	3.98582372996993	4.06965789448884	3.99915056307784	3.73011272339005	-0.515571988199576	0.317017285694657	0.710949904538205
Merged-chr9-100452125-2	chr9	100451625	100452625	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	34348.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.47979652260455	5.65265406667882	5.4764042851006	5.14307131535475	4.96687246557893	4.57495086625064	-1.24303176414633	0.00162588272943224	0.0263721309044538
Merged-chr2-128718522-4	chr2	128718037	128719037	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	19622.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.81335731695312	6.69235358323877	6.98726849038017	6.85516882698769	7.20043216793944	6.84877384809605	0.243978124402334	0.361616953239037	0.747458707295016
Merged-chr16-21616031-4	chr16	21615556	21616556	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	78609.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.78145128845781	3.71204188943947	4.19262072892383	3.79791652568415	3.6956181496758	3.75313187447144	-0.491200958924771	0.370388273711699	0.754819188807325
Merged-chr6-24756590-4	chr6	24756095	24757095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029848, exon 3 of 5)	exon (NM_029848, exon 3 of 5)	8228.0	NM_029848	77042.0	Mm.66017	NM_029848	ENSMUSG00000029680	Hyal4	4632428M18Rik|CSHY	hyaluronoglucosaminidase 4	protein-coding	5.3241560978815	5.03394175923158	5.21953144299521	5.193658629316	5.24423391287333	5.34534296994409	0.126371578577142	0.722977239182128	0.928984275173032
Merged-chr17-24896501-4	chr17	24895997	24896997	+	958.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-3.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	4.23147216751755	4.0763899710943	5.03181372394668	4.64331889552394	4.18214915930262	4.70582202217774	0.0345652711270242	0.949813460785507	0.988308657884383
Merged-chr10-20841618-3	chr10	20841117	20842117	+	953.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-110930.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.82268954296143	3.21665713783721	2.88753197111476	2.98280539543184	2.9466781877437	3.41381075241517	0.593951096812666	0.420273344991251	0.789521469804967
Merged-chr3-89474086-4	chr3	89473634	89474634	+	816.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	14563.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	2.2061812465619	2.23933765686	2.38278068404472	2.10934263895945	2.07175371993544	2.33107286914417	-0.746966200375866	0.401928176620634	1
Merged-chr16-87700068-4	chr16	87699560	87700560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	1106.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	7.64984761164754	7.94225642200161	7.23148413713754	7.51412109882362	7.64988188388717	7.07456683549527	-0.298008781068442	0.315966593904938	0.710163105957216
Merged-chr13-54073340-2	chr13	54072840	54073840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	1495.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	3.94274840379777	4.00350128374405	3.930889198446	4.85435451040064	4.59148794291778	4.21659066890692	1.68613176481609	0.00066483755923179	0.0131557202446037
Merged-chr8-117577189-3	chr8	117576665	117577665	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 9 of 32)	ORR1E|LTR|ERVL-MaLR	78890.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.03928653644462	2.95689953709014	2.96675441936328	3.23506900397584	2.96075240982937	3.72961947765906	1.47162716882015	0.0413695277486086	0.25415502546561
Merged-chr18-3338792-2	chr18	3338292	3339292	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033457, intron 1 of 1)	B1_Mur3|SINE|Alu	-1203.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	6.07730151721361	6.47393407924236	6.18104335893861	6.27431703413604	6.44395679658391	6.26249737287807	0.122254696031712	0.677044266899007	0.912673286392917
Merged-chr1-85326997-1	chr1	85326497	85327497	+	663.0	f1_balb.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-56431.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.62918586580516	2.74844626243856	2.55338422946616	2.16368847926008	2.13049633602671	2.29586027498143	-4.13696729840458	0.000490817361219903	1
Merged-chr9-77916579-2	chr9	77916079	77917079	+	809.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-786.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.1134122119932	6.15415458367929	5.84781184494107	6.0516176475241	6.19787094764792	6.03254143787482	0.0786973839900863	0.790688289534702	0.949584063682145
Merged-chr13-45967715-3	chr13	45967223	45968223	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.69459112985897	5.47732163151804	5.2292032083035	5.79606345732925	5.42609077226439	5.32903895239039	0.0867787762741714	0.812253624649913	0.955535756597107
Merged-chr4-154935192-4	chr4	154934711	154935711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7134.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.19395193143243	7.04378594293181	6.58464230337726	7.14788444190062	7.0672505677015	6.81534817670098	0.0687434184366544	0.809685286887043	0.954764148309612
Merged-chr3-152262169-4	chr3	152261673	152262673	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	3622.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	5.16509743642428	5.18636896454729	4.52659505608208	4.58903795411739	4.57147537728738	4.55034684708558	-0.991853531328326	0.0240192917010102	0.182253987220286
Merged-chr10-17655696-4	chr10	17655204	17656204	+	971.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67524.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.86659504246754	5.07065326876235	4.64315684784231	4.90616999008856	5.22769889106885	4.95029493346556	0.353781669994427	0.383592421766369	0.76494131641868
Merged-chr8-11479300-9	chr8	11478784	11479784	+	985.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-785.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	6.06431428930083	6.17837581393452	6.04751663519839	6.07976380533618	5.86589666951485	5.97014601016182	-0.22439173743867	0.441832467649072	0.802999352423289
Merged-chr17-33358870-4	chr17	33358360	33359360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207541)	promoter-TSS (NM_207541)	18.0	NM_207541	224694.0	Mm.170029	NM_207541	ENSMUSG00000003929	Zfp81	AA409460|AA409461|C330034P10Rik|D330034E10Rik|Hszfp36|KRAB13|Zfp78	zinc finger protein 81	protein-coding	5.35590180645948	5.34700130446495	5.5371959249217	5.47710281383221	5.35082618923061	5.54442835836969	0.085687400527845	0.798248739732207	0.951930937621884
Merged-chr19-7383712-2	chr19	7383212	7384212	+	960.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167831)	promoter-TSS (NM_001167831)	-686.0	NM_001167831	68229.0	Mm.34766	NM_001033139	ENSMUSG00000024970	Spindoc	1700105P06Rik|AI846148|SPIN-DOC	spindlin interactor and repressor of chromatin binding	protein-coding	3.19198559978024	3.36242343774675	3.21658243126105	3.20428196759689	3.10260570443665	3.23066432588853	-0.357866647006993	0.56981676787098	0.868897023832802
Merged-chr13-24797794-4	chr13	24797284	24798284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-3873.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	5.38100211230294	5.2855277206317	6.00672139888722	5.93406996989229	5.98803715694255	5.95862620016121	0.683787192358004	0.0565491128466093	0.30663876282572
Merged-chr7-28702923-4	chr7	28702429	28703429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9785.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	5.57115052488811	5.06097641133193	5.63209967442938	5.88950796816057	5.40763723011842	5.84248608267583	0.532792636915359	0.160109913050375	0.532705251913135
Merged-chr15-84321784-4	chr15	84321304	84322304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2916.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	4.18938424904666	3.9840933052223	4.27695569887293	4.05354220542416	3.71882946026958	3.76801511095764	-0.888927784489349	0.0888289361808984	0.395740892447754
Merged-chr17-26533994-4	chr17	26533482	26534482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25510.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.35453293255591	8.53028709473218	8.12005774403688	8.0923080737796	8.496120844855	7.96574319323765	-0.191461270896377	0.452193804332151	0.809286173636239
Merged-chr7-44344842-4	chr7	44344357	44345357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034115, intron 21 of 24)	intron (NM_001034115, intron 21 of 24)	30173.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	3.25847474635381	3.03733280455378	3.07784843014801	3.20843321259652	2.9243191368311	3.2090938619432	-0.0622474488365505	0.926018614308442	0.983305773102619
Merged-chr19-38030958-4	chr19	38030437	38031437	+	678.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	RLTR26C_MM|LTR|ERVK	12640.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.2633489219644	4.32066972615464	4.44696568266237	4.66790561304419	4.81208049235453	4.89836631019843	1.11391838809558	0.00832871764093972	0.0885643370565255
Merged-chr13-112398313-4	chr13	112397814	112398814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65756.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.95784323589721	6.29890385093146	6.12384095271136	6.90075218223638	6.69927516576864	6.46403832478873	0.282799065345789	0.408021532484737	0.781926100186554
Merged-chr7-80554920-3	chr7	80554396	80555396	+	791.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19777.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	3.23177467538189	3.36879634716959	3.07522958448231	3.18497142011754	2.91953396567079	3.3781652140329	-0.27713202039411	0.684626504190559	0.915930759709583
Merged-chr4-59164180-4	chr4	59163675	59164675	+	956.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25375.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	2.82436498222536	2.78136597640115	2.92154879160507	2.87903869456554	2.92607376595572	2.81114333297637	0.179637215697361	0.797697827026158	0.951799370596145
Merged-chr16-57219458-2	chr16	57218958	57219958	+	975.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	12008.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	3.88436650601177	3.60625506754428	3.89799527543014	4.11056214378472	3.84784157166834	4.06276408390836	0.645993237683182	0.220490636549551	0.615017427709933
Merged-chr18-11705204-2	chr18	11704704	11705704	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 6 of 18)	intron (NM_001081223, intron 6 of 18)	47855.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.19829087686209	3.20979020937605	3.26965420442374	3.39286059867153	3.34248470533835	3.7542917978375	1.07701172588559	0.0835641737644827	0.382633049229313
Merged-chr17-71012132-3	chr17	71011630	71012630	+	650.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-7427.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.22268807399593	2.9520107080286	3.15821741690129	3.28663401204918	3.19718292729074	3.50287259157341	0.891609380213665	0.172502192463283	0.551095811415
Merged-chr19-43760664-2	chr19	43760164	43761164	+	838.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113562, intron 4 of 8)	intron (NM_001113562, intron 4 of 8)	7641.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	2.37366644674331	2.37318511807332	2.36443202877388	2.56793788421618	2.30109750161255	2.56849512894221	0.688367712183001	0.403894473708643	1
Merged-chr2-117121735-5	chr2	117121284	117122284	+	873.6400150000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277256, intron 1 of 4)	CpG	713.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	7.5600435794214	7.21229698878584	7.50364460346985	7.53188083777729	7.24709227133538	7.45023452977769	-0.029777969399547	0.904541882393325	0.978142219404953
Merged-chr7-136065897-1	chr7	136065397	136066397	+	865.5	f0_balb.idr	Intergenic	Intergenic	-202427.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	2.3105701501838	2.48858250974117	2.48984563449655	2.21779413855085	2.20861365628577	2.37393327033986	-1.12618254134174	0.190153627661179	1
Merged-chr6-87913320-2	chr6	87912820	87913820	+	650.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173737)	promoter-TSS (NM_173737)	-656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	3.53018359447092	3.64423464461831	3.83233293836609	3.21220148188728	3.557775528773	3.90009733406434	-0.3040730018779	0.630375372412086	0.894709964383782
Merged-chr1-131964562-2	chr1	131964062	131965062	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	1647.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	5.80162115618801	5.945990005046	6.17341976382246	5.74443528017773	5.36808404229979	5.66452626523398	-0.688785629970311	0.037720432269498	0.240137273590206
Merged-chr3-97609367-3	chr3	97608871	97609871	+	726.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026539, intron 1 of 22)	intron (NM_026539, intron 1 of 22)	819.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	5.57384943500467	5.66206003244524	5.3642169217529	5.52401185847088	5.65622622713342	5.18868172151044	-0.116651061752417	0.741417641575947	0.934810423981747
Merged-chr16-24626337-4	chr16	24625826	24626826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95529.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	7.7895173921091	7.82150199578225	7.36750174650013	7.55792945082023	7.86715127139162	7.3787323643453	-0.082121873421718	0.758312775749495	0.940121252394213
Merged-chr4-95193868-2	chr4	95193368	95194368	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141646.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.36108159836085	5.46014798220886	5.47004605680566	5.54571239625086	5.36628719235727	4.95224328391511	-0.208225460580643	0.572128013750189	0.869795143026488
Merged-chr1-173981706-1	chr1	173981206	173982206	+	561.0	f0_balb.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	1138.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	4.89699398485021	4.79438272119204	4.4538294396025	3.73582388226758	3.46029573629812	3.76118185590892	-3.46323241446264	2.41055037167207e-09	2.48238954611497e-07
Merged-chr6-134141430-3	chr6	134140922	134141922	+	817.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105722.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.52931717599431	3.51081430486152	3.56449009868575	3.29476912069815	3.24104344206527	3.58270516063126	-0.614617665673888	0.304540377009426	0.700969682849711
Merged-chr15-73636565-2	chr15	73636065	73637065	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11821.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	2.72954374772101	2.74902346259825	2.66966989641711	2.857038075755	2.79622494379701	2.86823654795327	0.62754206344595	0.382978477399445	0.764450250622584
Merged-chr13-60627145-4	chr13	60626637	60627637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	24926.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.46070143619296	7.42772389333603	7.47483747218454	7.3467602757783	7.67323045915672	7.30396212905144	0.0119786958702014	0.960423922918128	0.990380695859216
Merged-chr12-8498781-4	chr12	8498211	8499211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007483, exon 1 of 1)	3' UTR (NM_007483, exon 1 of 1)	1298.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.35166787262415	7.44183223514968	7.13966530170756	7.35710827280593	7.39168030425872	7.44985467029086	0.108671954976275	0.644200011988412	0.900097303155759
Merged-chr6-116015389-2	chr6	116014889	116015889	+	822.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20384.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.63845874747189	3.68632505465734	3.73300566794499	3.45222802570669	3.3974756745089	3.75265227176553	-0.534577617767008	0.349194550940242	0.737209301320654
Merged-chr12-40562365-2	chr12	40561865	40562865	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	116312.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.56546032429065	4.69043309317845	4.55013302105271	4.60282160934161	4.44921996933722	4.69677586013557	-0.0703373104287931	0.866712636228715	0.969114221403526
Merged-chr15-86161827-2	chr15	86161327	86162327	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	intron (NM_145475, intron 3 of 12)	-23901.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.59771505314283	4.45045603865032	4.8212115553501	4.63051258022435	4.58845294402405	4.21064740496199	-0.302623685865326	0.505891795422939	0.838177729332582
Merged-chr2-103655274-4	chr2	103654749	103655749	+	831.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88939.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	4.63369035756753	4.48823950703165	4.23670864297128	4.38011926185713	4.45287290472324	4.57252579656207	-0.0153663860446204	0.972564468876748	0.993868590220018
Merged-chr9-96438833-3	chr9	96438357	96439357	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39818.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.76310723112871	4.57026516298185	4.54333919540348	4.41490029711541	4.57024503475318	4.24418308376793	-0.503411662939208	0.255245335608242	0.65234677289955
Merged-chr4-141790808-4	chr4	141790324	141791324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172338)	promoter-TSS (NM_172338)	-180.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	7.32435130754794	7.28210661450943	7.26379103577811	7.26254190219408	7.57739908957243	7.06929359248762	0.0618139469080746	0.808899580129373	0.954721853010197
Merged-chr11-80170419-2	chr11	80169918	80170918	+	832.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-13454.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.86857595686554	7.24978075242045	7.71952680507359	7.59499470901379	7.59251743147827	7.79285348288718	0.0318507999071034	0.904508156084695	0.978131323042371
Merged-chr14-70817998-1	chr14	70817498	70818498	+	636.5	f0_balb.idr	Intergenic	Intergenic	-34935.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	3.20892384926786	3.41981214731555	3.46512867073575	3.28602241752546	3.20294559438355	3.37450391912061	-0.324264033125062	0.597814631489058	0.880469749736855
Merged-chr15-78246340-4	chr15	78245862	78246862	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	1551.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.10804563890753	6.15360304744986	6.40376305822944	6.35039781464431	6.21796764836151	6.3530595328924	0.14325409883777	0.612869049068786	0.886969289870611
Merged-chr13-112439658-3	chr13	112439163	112440163	+	989.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24407.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	3.96069659867291	3.86369284778277	4.14038805367685	3.79465563551934	4.10598857728893	4.02498153723936	-0.0016580679602013	0.997415981269507	0.999479478481982
Merged-chr11-97188100-4	chr11	97187591	97188591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008379)	promoter-TSS (NM_008379)	-199.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	7.14657316499982	6.84946563391086	6.8849081553971	6.78623992353675	6.97556380739843	6.85519488152885	-0.141769072585954	0.580930640409611	0.873183274877594
Merged-chr12-73967291-4	chr12	73966765	73967765	+	807.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178392, intron 1 of 9)	ID_B1|SINE|B4	2735.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	6.20560006806998	5.95220294466322	6.19131053744339	6.13489380408922	6.09524484008965	6.4211987242369	0.165505124874381	0.57751630337934	0.872148719828391
Merged-chr5-114806180-4	chr5	114805666	114806666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026718)	TTS (NM_026718)	7810.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	6.60461840224968	6.70432211205171	6.91602226451513	6.84839182456902	6.78772215848265	6.81802871509545	0.121202568255763	0.636029843778099	0.896903216992966
Merged-chr1-87901138-3	chr1	87900629	87901629	+	959.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177646, intron 3 of 29)	intron (NM_177646, intron 3 of 29)	-46830.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	2.93137534678732	2.8209542577224	2.87241241734742	2.72980907865127	2.3733273780317	2.63218898914042	-1.66737963224936	0.0450770896315684	0.267868831986876
Merged-chr15-86167990-4	chr15	86167492	86168492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-17736.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	8.39069336329085	8.51112612516777	8.21650587164589	8.52423077127733	8.74506217365502	8.14778341327815	0.169055210917945	0.494041158077612	0.831815174927983
Merged-chr16-87713991-2	chr16	87713491	87714491	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	B3A|SINE|B2	15037.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.15594230594874	3.84165518976012	3.98003105658398	4.01933690650789	3.68847691310899	4.00072801114192	-0.289972323589509	0.58200108851229	0.873497302863014
Merged-chr17-80224512-4	chr17	80224063	80225063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355458, exon 1 of 3)	5' UTR (NM_001355458, exon 1 of 3)	112.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	7.00018228047102	7.14958023385119	6.8666950261136	7.05040878938542	7.09691060894405	6.96853650943177	0.0388535260491333	0.874656383366721	0.970754540400126
Merged-chr9-88522109-2	chr9	88521609	88522609	+	808.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040721, intron 2 of 4)	intron (NR_040721, intron 2 of 4)	788.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	4.49505720342203	4.62638406635938	4.584673019166	4.55104697751401	4.78297278153455	4.84233949079004	0.380554512460293	0.357963438633851	0.744515915420756
Merged-chr7-30957511-4	chr7	30956984	30957984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-681.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	7.33706373745378	7.35448437927955	7.37997081303858	7.64076291525657	7.23515078906614	7.326969205318	0.083142091138356	0.734108351602163	0.932325051544019
Merged-chr4-145270331-4	chr4	145269799	145270799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 12 of 12)	intron (NM_009401, intron 12 of 12)	-23429.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	6.10815225398673	6.18148802583258	6.00924763995492	6.02201906060026	6.10929719461355	6.15847584555974	-0.0192113450103763	0.946309936892208	0.987965428530715
Merged-chr10-51491381-12	chr10	51490945	51491945	+	989.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013532, exon 3 of 9)	exon (NM_013532, exon 3 of 9)	547.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	8.53145964147519	8.85882971795013	8.27573630127191	8.46036145265585	8.73424577087666	8.0861422061785	-0.168340424646142	0.537902089215108	0.854892120513238
Merged-chr17-12753956-2	chr17	12753456	12754456	+	650.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	12645.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	4.1584543105164	4.09652397094317	3.69369975177739	4.10743320061938	4.15142316397202	4.27542559394262	0.477584133564509	0.358838453135869	0.74519810754794
Merged-chr7-126622147-2	chr7	126621647	126622647	+	752.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3323.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	2.52662223978782	2.52124595600623	2.74226143427079	2.85194880608069	2.280482629264	2.49713995088175	-0.174858547913459	0.84014083204213	1
Merged-chr10-60285642-2	chr10	60285142	60286142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	1181.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.17947969464633	6.16354941086186	6.41612197877081	6.72696245749126	6.63403167217385	6.14853418224426	0.468735592990554	0.121440005247363	0.466173646273416
Merged-chr15-6509049-1	chr15	6508549	6509549	+	725.5	f0_balb.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	63716.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	2.17600140138728	2.23984097815727	2.34921873104352	2.18319982703295	2.01172214366647	2.16324877910538	-1.00549834973798	0.265334183645473	1
Merged-chr12-32111782-4	chr12	32111291	32112291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50512.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	4.75409000375719	4.71505351825878	4.73794066916535	4.48346605523414	4.32455772923057	4.48097806436398	-0.761376137622557	0.0680049856401016	0.341288229501905
Merged-chr11-100994812-4	chr11	100994237	100995237	+	901.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-14715.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	4.23897122179895	4.03625667751109	4.02847249215549	3.9648260841356	3.68275653651134	4.14371198873018	-0.519374468608804	0.319137792963193	0.71309158347113
Merged-chr13-67269781-3	chr13	67269256	67270256	+	926.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-688.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	4.56658762909728	5.12271896172687	4.64899682987999	5.16233961599624	5.42404973260271	5.33375761574401	1.04261819231841	0.0123216153381645	0.116347817641624
Merged-chr17-34116327-2	chr17	34115827	34116827	+	790.75	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037970, exon 4 of 13)	non-coding (NR_037970, exon 4 of 13)	3573.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	3.64919620013496	3.53253262180502	3.87952933594152	3.77899720241668	3.81969966906754	3.80170101596483	0.381417045968725	0.481149231150119	0.824953741430059
Merged-chr15-80785791-2	chr15	80785291	80786291	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 4 of 24)	intron (NM_144812, intron 4 of 24)	-12819.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	5.06269618271076	5.18752909696382	4.95596918058611	5.57316670525978	5.84601982500927	5.43956539901877	1.10089240940566	0.00212012554975265	0.0322802208131415
Merged-chr15-81101491-4	chr15	81100971	81101971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	3576.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.79742911367216	7.82210842344077	7.4065498932295	7.61669780991911	7.61308403970463	7.4305575500702	-0.198978190422363	0.413938931230243	0.785473901705954
Merged-chr6-88830284-4	chr6	88829788	88830788	+	859.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11647.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	4.68793719339527	4.36650115248576	4.45259931641837	4.87722407790249	4.84107591239878	4.65110290184946	0.676257521079308	0.109935762198673	0.443259712798868
Merged-chr11-54998908-2	chr11	54998408	54999408	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013472, intron 13 of 25)	intron (NM_013472, intron 13 of 25)	34563.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	4.11325928280074	3.53138110969594	4.0247336662706	4.06665794507252	3.68791819662254	3.84898828248624	-0.11576916928316	0.840518809585697	0.962819298477451
Merged-chr3-105764700-2	chr3	105764200	105765200	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	36681.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	4.13523881810377	4.19883010535117	4.19212892724314	4.29438119376153	4.11467034189402	4.16723367620949	0.0489330977368678	0.916189139374135	0.981243905880233
Merged-chr9-22390131-2	chr9	22389631	22390631	+	956.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	-925.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	5.5687655695356	6.08022376368586	5.57702624855681	6.02931446449352	5.91890701914826	5.58068858102239	0.157588732917909	0.655862597349862	0.904455152644889
Merged-chr2-170324312-4	chr2	170323864	170324864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31997.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.45148451651402	7.51249729188275	7.30600065464811	7.13580984658893	7.59116552305438	7.5118719898411	0.000538660327463883	0.998297210637183	0.999610145866128
Merged-chr15-84139842-3	chr15	84139323	84140323	+	877.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16648.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	3.17465399309225	3.27115129444162	3.51901029443715	3.28631700659833	3.17610600064937	3.53797611343847	0.0462760767853546	0.941801048140236	0.987058762320129
Merged-chr18-13031860-4	chr18	13031347	13032347	+	888.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24857.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.91992628665306	3.48493543115928	3.50997326020815	3.52368047456757	3.38697845595463	3.74087227357401	-0.373403325234778	0.535058845179588	0.85338655146067
Merged-chr9-123953779-4	chr9	123953299	123954299	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	14893.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.57065321505224	5.29554007007156	5.17942806115267	5.2387883308143	5.17999500196587	5.17556680262472	-0.339046268253427	0.34317802481242	0.732089657443708
Merged-chr12-110850425-6	chr12	110849928	110850928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199785, exon 1 of 7)	exon (NM_001199785, exon 1 of 7)	149.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	8.16379350545246	7.73223742953608	7.55886146389258	7.81976348019861	7.45880580486744	7.64480005113245	-0.292237610693029	0.275718532493416	0.673242318833586
Merged-chr3-88626728-2	chr3	88626228	88627228	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	5334.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.80290856721263	4.8761880465816	5.41250170955546	4.93705024350959	4.73630902980269	5.25256384365805	-0.140038531701324	0.745382875910867	0.936169170413447
Merged-chr13-111794774-2	chr13	111794274	111795274	+	827.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	14219.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.07633640210771	3.02846872897174	3.15792483497768	3.22770623747991	3.20832559411166	3.17181059043581	0.515942704930443	0.417383781617907	0.787970785225811
Merged-chr8-46140503-4	chr8	46139998	46140998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16352.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	7.31041878924046	7.39023862196411	7.06576809383926	7.48812796570274	7.75571871803018	7.44756392033452	0.45151699919766	0.0683172505575049	0.341854945769246
Merged-chr16-25794590-2	chr16	25794090	25795090	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127259, intron 3 of 13)	intron (NM_001127259, intron 3 of 13)	-7326.0	NM_001127263	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	2.3744624046427	2.38171031751259	2.37511245456479	2.6852714778165	2.63759400003282	2.64731705517805	1.74539043856699	0.0324127332172414	1
Merged-chr10-80900369-4	chr10	80899903	80900903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010722)	TTS (NM_010722)	566.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	6.67717405931109	6.6516346982908	6.5454324941484	6.58741719163791	6.46417164747824	6.46057958343557	-0.199320353812747	0.442323685736495	0.803209439640776
Merged-chr16-91366801-4	chr16	91366316	91367316	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5967.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.24387254458087	6.32553904991331	5.8343858456382	5.56232761705927	5.62416987558224	5.36021713791776	-1.12617175097626	0.000694715874377507	0.0136013925824008
Merged-chr4-141135109-2	chr4	141134609	141135609	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	PB1D10|SINE|Alu	4687.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	2.58144491575251	2.63376338490941	2.76445728738115	2.41849396240826	2.33059156750124	2.83699136419399	-0.660140053474706	0.433297549760819	0.797792142868168
Merged-chr17-27826422-4	chr17	27825930	27826930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5888.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	7.86943077121817	7.77899302439934	7.70952934265359	7.5160996489038	7.83325759713436	7.5594357991043	-0.200224747239339	0.388292780944896	0.76820261821444
Merged-chr10-68126271-4	chr10	68125778	68126778	+	881.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	146708.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.80311494254653	5.89667305728573	5.4826197292515	5.88741415458514	5.74947565241257	5.90118798357337	0.162282988669334	0.613873912975752	0.887317203673931
Merged-chr2-70889232-4	chr2	70888706	70889706	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-63726.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	4.14243685879033	4.23800558286883	4.18630830974617	4.19230714169277	4.60691280883726	4.5163633928713	0.69714007043762	0.133747652095097	0.489009343331084
Merged-chr12-54921157-2	chr12	54920657	54921657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013815, intron 15 of 26)	intron (NM_013815, intron 15 of 26)	-58280.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	2.88516261648875	3.0728747499079	3.05787001705476	3.01028635164898	3.09531498564235	3.01122154383131	0.160445957994187	0.810730745467208	0.955096593239846
Merged-chr11-97280523-5	chr11	97280037	97281037	+	986.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008942)	promoter-TSS (NM_008942)	39.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	6.90187637837796	6.58785995119867	6.95180763502321	6.84323530454961	6.27778525077071	6.44390349953255	-0.435289495347519	0.14785730126887	0.513107343244259
Merged-chr8-10899459-1	chr8	10898959	10899959	+	574.0	f0_balb.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-463.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	4.76306889174664	5.17129214859232	4.78601834836899	4.75474228098782	4.51571067322177	4.32059913346111	-0.87683140839	0.0473717624459244	0.275694229089678
Merged-chr8-106063266-4	chr8	106062769	106063769	+	819.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010901, intron 1 of 9)	B4A|SINE|B4	3666.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	4.60241503408038	4.3812191084471	4.32888208769487	4.59028815129374	4.60242522606038	4.65475260879445	0.406348236388264	0.343136417989825	0.732038434687009
Merged-chr19-44344075-4	chr19	44343634	44344634	+	918.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183216, intron 5 of 5)	B1_Mur4|SINE|Alu	10808.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	4.44279153609545	4.63168085668106	4.5723511668665	4.70110107686209	4.81705226392198	4.59750056129265	0.396090016096975	0.339620333593204	0.729313720985741
Merged-chr9-105053346-4	chr9	105052850	105053850	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053159)	promoter-TSS (NM_053159)	82.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	7.84152017522175	8.01940236454073	7.98883145520462	8.11036405604715	8.18913360979488	7.81328221242139	0.146347716336852	0.52197463790856	0.847400826543341
Merged-chr15-82380269-3	chr15	82379789	82380789	+	918.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163472)	promoter-TSS (NM_001163472)	-29.0	NM_001163472	56448.0	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	3.04820511138156	2.9085174315094	3.02997843343869	3.06656913304543	2.76782626279036	3.10225130740134	-0.0658080160278671	0.92489142814213	0.983070278897208
Merged-chr2-104095892-4	chr2	104095427	104096427	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111060, exon 1 of 5)	5' UTR (NM_001111060, exon 1 of 5)	126.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	3.71232243452529	3.82435691370251	3.8460109590605	3.33274212546848	3.20658410085008	3.50741557483255	-1.68956335178066	0.00467482874277384	0.0584409780692195
Merged-chr7-123344663-2	chr7	123344163	123345163	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	25252.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.26731141703242	4.27746645527772	4.4268956924444	4.19937902783934	4.06568367945107	4.09460250558145	-0.557745345883453	0.229488296129026	0.625090419808302
Merged-chr10-77965177-2	chr10	77964677	77965677	+	992.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	4695.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	5.58600024767246	5.75305054528545	6.12075426137859	6.19159321944948	6.23979532747534	5.88671910407716	0.517494444028396	0.114002305068815	0.450886303830234
Merged-chr16-31192605-3	chr16	31192095	31193095	+	749.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	ORR1E-int|LTR|ERVL-MaLR	8643.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	5.51134914914147	5.45360684469456	5.69303372192153	5.44653974514123	5.37470822580578	5.45598548928824	-0.240316685238855	0.466543470630401	0.817586753758551
Merged-chr12-119359571-1	chr12	119359071	119360071	+	825.0	f0_balb.idr	Intergenic	Intergenic	-83839.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	3.66015295737077	3.71204563360809	3.73605748864451	3.31579044793172	3.66508033248626	3.99205619484795	-0.068651780704036	0.908990986898515	0.979384717565381
Merged-chr12-3915309-2	chr12	3914809	3915809	+	984.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001271753)	TTS (NM_001271753)	23565.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.34998351715241	2.42443499004897	2.41917194932967	2.53286654502762	2.5179108391617	2.68228666513889	1.09325487267675	0.172215632198554	1
Merged-chr9-95637813-5	chr9	95637284	95638284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029620, exon 1 of 9)	5' UTR (NM_029620, exon 1 of 9)	156.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	7.33617772558434	7.79332010087675	7.58633526232054	7.6613944522899	7.76993949482395	7.33801237967025	0.0333396378283413	0.898393748732218	0.976353730793982
Merged-chr2-147009995-4	chr2	147009476	147010476	+	709.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3023.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.28730337724903	4.2880740858721	4.33686613184422	4.45785536735585	4.44624200182704	4.57068049583385	0.483427737834213	0.266181939234557	0.663942768063461
Merged-chr15-36649296-2	chr15	36648796	36649796	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-40323.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.24377743820852	4.35768667284364	4.60309413374594	4.94202543310567	5.02162945794779	4.89911163178893	1.33472972834275	0.00132630418264714	0.0224771411566475
Merged-chr11-4237666-1	chr11	4237166	4238166	+	902.3333130000001	f0_balb.idr	intron (NM_001013365, intron 1 of 2)	intron (NM_001013365, intron 1 of 2)	881.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	3.38948818274832	3.15745885105849	3.12397963010697	2.92593828315687	2.63612189207467	2.95405532436281	-1.94065525812878	0.0103734217240351	0.103078547125952
Merged-chr2-118479728-4	chr2	118479206	118480206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009273)	promoter-TSS (NM_009273)	-10.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	7.16814438046173	7.33207320807797	7.18081950354709	7.29009367024028	7.42391955527129	7.37620876876969	0.198773803177935	0.391761688779108	0.770740686620609
Merged-chr8-117501543-2	chr8	117501043	117502043	+	579.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	3268.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.27528150158824	3.15949147569569	3.57619642998992	3.41288920233379	3.04049682400899	3.54586684745681	0.00791812075572658	0.990500784154513	0.997892660866058
Merged-chr10-60748773-2	chr10	60748273	60749273	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	4009.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	2.79961459378498	3.14332746198297	2.92746591657027	3.23977790318213	2.78421132568725	3.18029548916869	0.511086189861532	0.487451523640128	0.828445729506224
Merged-chr6-72145282-2	chr6	72144782	72145782	+	973.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	B4A|SINE|B4	-22085.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.24501942478052	4.4786669357777	4.59569485236789	4.14348037962811	4.1083489327031	4.90053458875072	-0.0368223578109367	0.943763093688512	0.987495247303971
Merged-chr7-73557905-3	chr7	73557417	73558417	+	993.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	CpG	478.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	8.52438699037698	8.68156445220711	8.48026568887056	8.57138023921983	8.523128608269	8.63894691522423	0.0126124051647701	0.950420102045433	0.988433104826972
Merged-chr13-65019493-4	chr13	65018992	65019992	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13566.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	5.7089301234686	5.4653667312939	5.44639216284421	5.78569717124858	6.03503312504486	5.12345002076795	0.311407748440605	0.429960945890996	0.795981630972679
Merged-chr10-63386591-4	chr10	63386095	63387095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	32.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	6.485891271431	6.4194893613224	6.43762348358779	6.47187384330657	6.39891864365681	6.36515541125131	-0.0558752579038244	0.832181127559831	0.960611438244586
Merged-chr5-129786594-2	chr5	129786113	129787113	+	584.916626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	640.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	7.41992773858436	7.73129349303088	7.39768615511581	7.61989362900719	7.93005719947745	7.43283218526989	0.22672193575585	0.383636446065706	0.76494131641868
Merged-chr14-48590125-3	chr14	48589630	48590630	+	900.6333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72604.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	3.76757408053848	4.10204958040626	3.53868429948465	2.87884513169641	2.78410775491363	2.98195630230135	-6.13343895243743	4.91132550553084e-07	2.88806765133718e-05
Merged-chr15-58145435-4	chr15	58144860	58145860	+	764.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	3994.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	5.62561684122416	5.49512427972562	5.30821430841555	5.33851883419594	5.33006126169041	5.2397517024408	-0.359708317432977	0.292950639661983	0.690053425164737
Merged-chr5-99241522-2	chr5	99241022	99242022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145839, exon 3 of 14)	exon (NM_145839, exon 3 of 14)	11405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.52703362727084	5.70583229683301	5.74221461789757	5.49697249881175	5.66936213529909	5.67510671853708	-0.0764411354927671	0.811749663936608	0.955306974300267
Merged-chr6-115764241-6	chr6	115763734	115764734	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1768.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	5.86253756158007	6.0316224812024	5.75166956366601	6.22119094069096	6.39474779531664	5.94552906105225	0.544487555489868	0.0801475557266759	0.374532057559544
Merged-chr12-76255252-4	chr12	76254757	76255757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	25.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	6.21167184808666	6.08654025190018	5.48630320169328	5.99160181731416	5.93250657894062	5.45135635706442	-0.269493673404315	0.470419752085138	0.819495618343931
Merged-chr3-8984807-3	chr3	8984298	8985298	+	937.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MER5A|DNA|hAT-Charlie	19406.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.72854843991537	7.50416707342502	7.27297258393847	7.4504516464732	7.80090758496244	7.3884548941189	0.0667420330722776	0.799484460922758	0.952248176414355
Merged-chr16-64819271-3	chr16	64818784	64819784	+	656.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 2 of 8)	MTC|LTR|ERVL-MaLR	32439.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	2.9576651173962	2.90651652768491	2.96497558407402	2.96285644842349	2.67995792251641	2.97829895894368	-0.32847758999501	0.644464899428381	0.900210434145893
Merged-chr6-56797746-4	chr6	56797254	56798254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	59.0	NM_001362210	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	8.50872937145024	8.48770128355739	8.25097573283641	8.37226859964527	8.33037191052565	8.49941488605004	-0.0357746691299476	0.865864311072809	0.968641478520565
Merged-chr8-70693818-4	chr8	70693319	70694319	+	931.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3920.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	4.4887512490661	4.28023297920463	4.71658963777361	4.62179858465494	4.47053549793104	4.37548130411299	-0.00230864353158434	0.995887504096277	0.998961028701257
Merged-chr18-34927076-2	chr18	34926576	34927576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	4927.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	5.62154560037787	6.07351539880552	5.6641518342764	5.90569354085567	5.77710911712251	5.72684550634998	-0.0101451465045201	0.975500825416915	0.994508458032816
Merged-chr6-135937550-4	chr6	135937091	135938091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008171, intron 4 of 14)	MIRb|SINE|MIR	235920.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	4.59449359186777	4.59180214065217	4.67603349185272	5.74891673030987	5.40119555708579	5.10202758412142	1.77694514734818	8.97050131165509e-06	0.000363805673702951
Merged-chr16-92419204-4	chr16	92418698	92419698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-19120.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.02767832172724	7.35407511112831	7.14960342221758	5.51505570542865	5.95184583306748	5.83095232345499	-2.27356472461551	9.07880245149105e-14	2.10425903728041e-11
Merged-chr15-81847345-2	chr15	81846823	81847823	+	564.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020507)	TTS (NM_020507)	11003.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.11875957577716	4.08615496297894	4.5553456682537	4.2717197088575	3.92592397820384	4.46871616634223	-0.0803075056122877	0.876145046038102	0.971188663035214
Merged-chr5-18043206-4	chr5	18042692	18043692	+	885.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80622.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	1.79854107651922	1.77726417553861	1.81077607983299	1.96744797248688	1.84868319989198	2.09126036871204	1.52287023828358	0.127680777912057	1
Merged-chr7-102427268-2	chr7	102426768	102427768	+	550.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009287, exon 10 of 12)	exon (NM_009287, exon 10 of 12)	-14427.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	2.92327236247078	3.25119847922506	3.40776810632979	2.90243619649932	3.17377398864075	3.09547583355674	-0.604519186418302	0.389864285564257	0.769390875251541
Merged-chr5-104459883-2	chr5	104459383	104460383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008861, exon 1 of 15)	exon (NM_008861, exon 1 of 15)	426.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	3.08360756410702	3.08924556123641	3.18983016826999	3.416753100992	2.94727546183133	2.95660041258352	0.0350693331749822	0.959602804912066	0.990242512723989
Merged-chr10-118736284-4	chr10	118735789	118736789	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	132614.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.35445319064282	4.31841659048092	4.66245814746346	4.98220083328812	4.80559198371534	4.72887311716247	0.967547339437132	0.022351407171971	0.173696490897389
Merged-chr3-108880070-2	chr3	108879570	108880570	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	G-rich|Low_complexity|Low_complexity	9938.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.81490952034038	4.21876336819082	4.54128805443736	4.67332827642951	4.65810122533484	4.56646356643969	0.203842035660731	0.653939099106829	0.903623868780893
Merged-chr16-25060324-2	chr16	25059824	25060824	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	685.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.05541052094714	5.245404534962	5.3408367739458	4.87123912559884	5.04931472502755	5.15815209019699	-0.387693780889848	0.296357010793137	0.693085082607025
Merged-chr17-72837452-4	chr17	72836963	72837963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357370)	promoter-TSS (NM_001357370)	-73.0	NM_001357369	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	8.43815716515996	7.97028312117923	7.86595166640399	8.31083602651271	8.1243009214701	7.70746085435348	-0.0629906102135034	0.821226812798853	0.957942312428027
Merged-chr6-115033727-4	chr6	115033210	115034210	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026894, intron 2 of 7)	intron (NM_026894, intron 2 of 7)	4164.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	3.52148259090042	3.12555460585965	3.36681625406195	3.53728268632167	3.45940718739245	3.43881023447754	0.495267364493017	0.422233839520665	0.791093047191811
Merged-chr19-32804923-4	chr19	32804429	32805429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 5 of 8)	intron (NM_008960, intron 5 of 8)	47352.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.28710909039574	3.92160321728955	3.97365850809651	4.12297852553237	4.13043747688379	4.48696674111524	0.483556515824722	0.338544406857455	0.728543936569625
Merged-chr3-89997991-2	chr3	89997491	89998491	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045749)	promoter-TSS (NR_045749)	112.0	NM_001310681	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	6.6927032565316	6.72359508031008	6.01269937206702	6.62856616349553	6.62647075959635	5.91433440191026	-0.134998844629694	0.710039463051843	0.924179759129297
Merged-chr6-13665870-4	chr6	13665387	13666387	+	762.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	intron (NM_175312, intron 1 of 4)	12079.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	4.23392673551229	4.08887501391382	4.06225308200553	3.9332926354456	4.04762721471319	4.43445549988715	0.0370909907062096	0.941020037694974	0.986888338850358
Merged-chr5-43114131-3	chr5	43113631	43114631	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-119332.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.48695641973996	4.82585040987705	4.53280309745106	4.75315606062887	4.63323339909402	4.55732999423661	0.0511796437493469	0.904233150085523	0.978071913797934
Merged-chr1-152903784-3	chr1	152903302	152904302	+	996.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-603	-1156.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	8.36050387277768	8.57080264215745	7.95655573525267	8.16463375524584	8.65510961618698	8.12632354857939	0.0258874463601428	0.924917278979138	0.983070278897208
Merged-chr18-32162943-4	chr18	32162442	32163442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011946)	promoter-TSS (NM_011946)	-147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	8.13303713118368	8.70373178855576	7.96391753749698	8.19194791441642	8.11643041736849	7.96465260942595	-0.30824562431002	0.25608769246115	0.653115451305932
Merged-chr2-165902447-2	chr2	165901947	165902947	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-17609.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.67862374512071	3.74223420910949	3.79510813820601	3.90699504976028	3.80236285880914	4.05569688649042	0.580653778439405	0.265743473679615	0.66350545993919
Merged-chr4-150589225-3	chr4	150588739	150589739	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62935.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.16581049773949	5.94880080590208	6.04958547651416	6.21865589784978	6.35855528499144	5.78397952574249	0.170577817787183	0.590872238976466	0.877301111216348
Merged-chr6-72115070-4	chr6	72114569	72115569	+	905.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	7871.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.99787026599684	5.29887530906355	5.14843352494099	5.32420419908491	5.2898414995847	5.6216647755105	0.507956367868158	0.16242515791081	0.535844601516242
Merged-chr3-34020526-3	chr3	34020042	34021042	+	992.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	CpG	463.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	7.883602683105	7.88550943407138	7.63743710689116	7.91356350742336	7.76661596001672	7.84378968853245	0.0400080179546376	0.857291149549704	0.966735539271044
Merged-chr17-88552883-2	chr17	88552347	88553347	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	ORR1G|LTR|ERVL-MaLR	22723.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.34862415393126	6.40264263358205	6.57601640423561	6.5114450249545	6.57399758005028	6.44269250311369	0.123582635634542	0.643255258103087	0.899698837071854
Merged-chr7-127296263-4	chr7	127295769	127296769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008400)	promoter-TSS (NM_008400)	9.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	6.52252477944705	6.30618684990429	6.6691317582574	6.681581569583	6.45302896660795	6.66487067173033	0.158736867417805	0.56624217917353	0.867257533499542
Merged-chr6-54117239-7	chr6	54116740	54117740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	77308.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	7.01761086271382	7.27273329916313	6.99124274468102	6.59638866536609	6.74529437535025	7.04924452941078	-0.462738172918138	0.0861093180834599	0.388640927483648
Merged-chr8-115398205-4	chr8	115397708	115398708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	308686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.97007242003923	3.89782605712779	4.02062656117678	4.43314148440443	4.2389130279554	3.88113328295021	0.718340508533943	0.157991230581559	0.529527616804567
Merged-chr8-20297542-4	chr8	20297044	20298044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030708)	promoter-TSS (NR_030708)	-112.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	5.83807421057497	5.74170508988767	5.71535407968454	5.53326600945834	5.37339457492725	5.589112622986	-0.51347796555723	0.107424378305663	0.437628772095842
Merged-chr11-120947924-2	chr11	120947424	120948424	+	998.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	-560.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	2.67820486086252	2.69843287188571	2.8605014620521	2.52475611508821	2.77069721018596	2.75420402537766	-0.294035884705905	0.697819505360346	0.920111182740464
Merged-chr7-19317500-2	chr7	19317000	19318000	+	983.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7455.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.09290364146338	4.52046858971858	4.32602962328961	4.67965562632233	4.58666797985837	4.86249911146816	0.0214106568551778	0.964040958300136	0.991274561407747
Merged-chr15-27938462-2	chr15	27937962	27938962	+	724.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	87386.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.79518909646652	6.54457077734313	6.40223365885717	6.4336845545756	6.30237547737624	6.38502365077314	-0.366627947377848	0.186813780537096	0.571637546216283
Merged-chr8-75086255-4	chr8	75085738	75086738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7380.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.16771483901039	7.20166230483967	7.34977643625432	7.06076180496055	7.38517740634471	6.85713519063709	-0.157986949405653	0.551807954199035	0.861486924293384
Merged-chr3-104992873-4	chr3	104992364	104993364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31155.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	4.12303581851035	3.83462666818415	3.92164437152768	3.71491241044702	3.61288242243962	3.99044759455925	-0.616424253203237	0.252994435786702	0.650389625635366
Merged-chr19-42779795-4	chr19	42779338	42780338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001346703, exon 1 of 20)	5' UTR (NM_001346703, exon 1 of 20)	140.0	NM_001346703	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	8.17226650551934	8.46281891974962	8.19161212717649	8.17325547813201	8.18760764042029	7.82465389274734	-0.290343063479389	0.216619300160046	0.610088638224921
Merged-chr2-60902725-4	chr2	60902237	60903237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-21299.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.93337332763418	7.05319551427002	7.00573862053087	7.14134448767353	7.44364989010279	7.20402465997294	0.418484278367811	0.088040717502126	0.393677438925061
Merged-chr3-60582287-3	chr3	60581788	60582788	+	790.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	81109.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.48189002277664	4.78074480541344	4.48791308391272	4.86499913109548	4.68480603512964	4.91153842696735	0.509280470093683	0.224915759830284	0.619819002536735
Merged-chr14-55733283-2	chr14	55732783	55733783	+	660.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-11020.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	3.44334724234178	3.06547885473099	3.25796456290989	3.00902893172307	3.08597757813236	3.32919594655584	-0.512516440136679	0.442410290756612	0.803210813434975
Merged-chr3-94814826-3	chr3	94814341	94815341	+	701.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22726.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	4.64132408388113	4.59084967464966	4.68512297541091	4.16541234331761	4.12986533371517	4.43336869881445	-1.03343018305712	0.0201239230964512	0.162160700465767
Merged-chr2-35449875-4	chr2	35449366	35450366	+	852.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11583.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.07571029724832	4.96419288296181	4.49394734545737	4.45558218531291	4.17498098246666	4.68968086998088	-1.02859614633682	0.0270624560736915	0.195912027577842
Merged-chr4-150860716-4	chr4	150860220	150861220	+	969.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	5650.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	6.44357466639202	6.88153519775135	6.78976744257965	6.84077965533976	7.33515819944496	6.86344949276101	0.502359516713539	0.088416633868838	0.39466998165375
Merged-chr13-23778482-3	chr13	23777986	23778986	+	943.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4055.0	NM_001029935	214158.0	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	2.1304569278728	2.19897868453964	2.33693763793833	2.12393083197927	2.18336596737096	2.08246054606769	-0.636847243666769	0.476660179383477	1
Merged-chr4-129336476-1	chr4	129335976	129336976	+	596.0	f1_c57bl6.idr	intron (NM_025970, intron 1 of 6)	intron (NM_025970, intron 1 of 6)	450.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	5.51044408281928	5.84283471683774	5.86210152542964	5.91519275930709	6.12046871060958	5.4466000695217	0.227478463894015	0.522568376659436	0.847663852239783
Merged-chr5-33820398-6	chr5	33819851	33820851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22761.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	5.40498301963516	5.39374678630135	5.68272875928509	5.90583410086439	5.03300842060577	5.6678177897282	0.165493718122982	0.680282309841748	0.914210928957366
Merged-chr19-4060551-2	chr19	4060051	4061051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1104.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	6.26065520031956	6.2720139207766	6.32240571133105	6.00453805793482	6.00023704301861	6.34459203610977	-0.284292482389655	0.326164990603678	0.718556399216867
Merged-chr5-117121177-2	chr5	117120677	117121677	+	833.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	1048.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.18751156225208	4.20373330735124	4.22130185866063	4.2513275619822	3.95006296206747	4.15128436890434	-0.241630703266772	0.612118867154674	0.886534614951718
Merged-chr12-81751323-4	chr12	81750826	81751826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001174107, intron 2 of 10)	ID_B1|SINE|B4	29844.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	5.87835624058857	5.65278173477114	5.40860503681766	5.9928077151918	6.029641194198	5.65857344568433	0.432190578272041	0.200327898627757	0.589297808036559
Merged-chr7-35028820-4	chr7	35028315	35029315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	27751.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.5421800240559	7.48956969686021	7.50736291826395	7.589208981742	7.65725332495795	7.48289199927719	0.101893136311831	0.645582900502929	0.900653253274445
Merged-chr3-8767707-4	chr3	8767235	8768235	+	855.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-100697.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	5.73147132586893	5.61248279136104	5.27702977028055	4.93757663639165	4.61453137173396	4.44322229377862	-1.83731730801828	9.41087757480556e-06	0.000379941922001175
Merged-chr8-24428576-3	chr8	24428079	24429079	+	851.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10367.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.01980636475753	4.02390995815681	3.89494714696174	3.93247155449785	4.0143959829671	3.91358495276454	-0.0823926601332539	0.868280831783206	0.969642939011354
Merged-chr7-107664623-2	chr7	107664123	107665123	+	651.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357436)	promoter-TSS (NM_001357436)	-855.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	2.70051347551931	2.71273767855784	2.86849567298248	2.58279834615828	2.52172129541862	2.57742713766152	-1.15474283990994	0.132486697252223	1
Merged-chr1-36684318-4	chr1	36683814	36684814	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_201365	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	2.53679606624523	2.55405921514564	2.61820280091585	2.54075838606492	2.29947890228896	2.43621005162683	-0.878375304071614	0.281025499972533	1
Merged-chr7-127011168-3	chr7	127010656	127011656	+	707.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	3438.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	4.77772664634841	4.816530014026	4.92306969111945	4.53012786235421	4.46409220185763	4.77338650228261	-0.593374953555909	0.147507309169481	0.512398881681894
Merged-chr11-97629804-4	chr11	97629294	97630294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175332)	promoter-TSS (NM_175332)	-78.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	4.58766104414382	4.43947552671251	4.42357858084938	4.76689279280528	4.20002913564625	4.7713693725556	0.269068509140872	0.565118384058671	0.866552670637515
Merged-chr5-146805547-2	chr5	146805047	146806047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10591.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	7.58752654935337	7.47960668968236	7.43577671672247	7.69562419508404	7.84026328651705	7.59421981837568	0.311559280804142	0.168769620277246	0.545438812408496
Merged-chr1-92106887-4	chr1	92106358	92107358	+	884.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	73483.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	3.04546816833012	2.84999541384444	2.90491861831103	2.61699408322358	2.55436600113713	3.03540181117078	-0.963250989942193	0.219996479303748	0.614380501758895
Merged-chr13-37633168-4	chr13	37632649	37633649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-192889.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.0486763967071	4.83624078189063	4.61596170879363	4.99891093702327	5.10556269637491	5.29837121330817	0.595241938423822	0.135195619558367	0.49130266463784
Merged-chr2-4567183-4	chr2	4566667	4567667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	7413.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.38128887078016	6.64379349830515	6.77586267985376	6.84827038318552	6.94409398278068	6.64442279232173	0.349030899013957	0.201952018409816	0.591607644974088
Merged-chr5-135956538-5	chr5	135956016	135957016	+	890.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17960.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	5.971932355162	6.30611943669397	6.26295455941271	5.02805323262573	5.33091899633701	5.51793973849314	-1.61978131843156	2.42545646467648e-06	0.000118576604884137
Merged-chr4-109119811-4	chr4	109119308	109120308	+	942.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	MTD|LTR|ERVL-MaLR	-1772.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	6.66081304360556	6.78517778675151	6.89641283069523	7.17279848791818	7.28177978727547	7.11503284772732	0.637912162539548	0.00924619321290096	0.0953354702427587
Merged-chr2-114201322-5	chr2	114200722	114201722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	CpG	210.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	7.83607658766302	8.00420479276158	7.57455351315947	7.55252823886357	7.86313785938921	7.64055414370565	-0.183680882778293	0.455100556014514	0.810773927650745
Merged-chr15-59566934-2	chr15	59566434	59567434	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-81720.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.05380647546769	3.05325775926013	3.0362936591863	3.22259654638441	2.74675983640425	2.85920307667394	-0.403064617597393	0.577321344683524	0.872117086580778
Merged-chr9-25539523-4	chr9	25539044	25540044	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	57947.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.83315049995397	3.56084018941651	3.51083529528352	3.52454063557493	3.607069130809	3.52610569216603	-0.323232859138411	0.572513211579281	0.869840399318717
Merged-chr6-38710110-2	chr6	38709610	38710610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47041.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	4.01871583322728	4.40431620916456	3.89082122463435	3.79042898979932	3.95101327434349	4.15709637265214	-0.471568975840147	0.375798748789666	0.758951282467405
Merged-chr1-64119776-7	chr1	64119278	64120278	+	977.488098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	1611.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	7.34330131920684	7.24592030940805	7.5727668519325	7.3562420416817	7.63604041800795	7.58305086583634	0.211895493194782	0.383127812835939	0.764535004943228
Merged-chr11-107304121-2	chr11	107303621	107304621	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-114740.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	2.69440020269272	2.81421167408713	2.89662558639221	2.66518091861774	2.85727431321598	3.02562411409193	0.263563408386018	0.71869383178901	0.927436047696959
Merged-chr11-60219835-4	chr11	60219349	60220349	+	787.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	778.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	7.05511443885075	7.21852749893464	6.70435974704766	7.14555221007131	7.21402609795274	6.7294600540518	0.0555392611347146	0.846471413121846	0.964019508678144
Merged-chr5-24578318-1	chr5	24577818	24578818	+	540.0	f0_balb.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	-851.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	6.34123307345368	6.55685104476544	6.53491142397868	6.86032018979248	6.8964127005733	6.81959165629772	0.603486719275921	0.0188448154933947	0.155343709884524
Merged-chr8-106339040-4	chr8	106338530	106339530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1042.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	5.44426987942149	5.82750120863016	5.76273844767189	5.64332280626199	6.03125656559018	6.29222272774918	0.573528825941693	0.100702066325989	0.423286414777412
Merged-chr4-139743767-3	chr4	139743275	139744275	+	918.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 8 of 8)	intron (NM_011039, intron 8 of 8)	89193.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	3.60557677102943	3.80507456096958	4.01945780739221	5.67815444416377	5.90040281478531	5.36100757783228	5.39502222120403	1.01018661320175e-16	3.90956314936238e-14
Merged-chr11-63955195-3	chr11	63954702	63955702	+	874.761108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9024.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	2.91852995461973	2.58061425613442	2.5864080002983	2.25101588154158	2.15633002322555	2.25112011070118	-4.24146274720104	0.000370612261706572	1
Merged-chr13-52043056-2	chr13	52042556	52043556	+	834.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53685.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.55075953756444	5.34876008266559	5.69672609695979	5.40990006564651	5.25721378376435	5.70851681342043	-0.139907350761002	0.692670966343171	0.91870248759071
Merged-chr1-93824809-2	chr1	93824309	93825309	+	966.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178882)	promoter-TSS (NM_178882)	-431.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	6.28861345781729	6.2924409018384	6.89742977454561	6.52620749488754	6.27223613114076	6.30363833819416	-0.230767306429241	0.465540898656401	0.81709064392726
Merged-chr10-21609781-4	chr10	21609229	21610229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	16584.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	7.29547350616844	7.28578601924363	7.082959315166	7.44944836203548	7.48961853763858	6.79733767297926	0.0978049124903676	0.732350429843601	0.931723932448277
Merged-chr5-122816549-2	chr5	122816049	122817049	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042491, intron 4 of 16)	B1_Mm|SINE|Alu	4793.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	3.84406618579396	4.22267754225415	4.16851531050301	4.57403611069027	4.38453182489663	4.54107548495254	1.10074436275051	0.0215426151916198	0.169681742224943
Merged-chr2-153143548-2	chr2	153143048	153144048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	L2c|LINE|L2	-17753.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.39342188412771	3.40220309958768	3.7708164032392	3.68205188631479	3.41398251921315	4.26531705449846	0.991953726447125	0.121683841118413	0.466679067652143
Merged-chr19-10511981-2	chr19	10511481	10512481	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025333, intron 3 of 3)	URR1A|DNA|hAT-Charlie	13228.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	6.38721118445329	6.49934936290587	6.5157288529012	7.05516812277715	7.46364343438954	7.19910832069708	1.22146665727015	3.3196134645135e-06	0.000154830940109439
Merged-chr11-68863949-4	chr11	68863439	68864439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10808.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	7.46014298123129	7.50776500042493	7.08296175991826	7.25437295213328	7.50172010742959	7.47916213019825	0.0643031054613172	0.799514014285401	0.952248176414355
Merged-chr9-85340488-4	chr9	85339967	85340967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13317.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.25667550045191	5.42171143968271	5.18475670921916	5.04130899507812	5.54102167215952	5.63111050987288	0.257367076697588	0.493847285273751	0.831671252465305
Merged-chr7-115149147-2	chr7	115148669	115149669	+	945.625	f0_c57.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	197895.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.95588205863748	2.84391330610891	2.87135838150759	2.90433770784022	2.76046688297416	3.33586337317768	0.580111424178804	0.429350369916172	0.795682190695026
Merged-chr12-55430160-4	chr12	55429675	55430675	+	949.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	31350.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	3.31045771969833	3.28136516437559	3.12960873327627	3.64940114666814	3.28358414045067	3.38516922013797	0.781980468929123	0.215573841013981	0.608978718828427
Merged-chr5-99379751-4	chr5	99379245	99380245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126818.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.50555598635368	8.36939623998235	8.12513849333465	8.3364747630365	8.73881400767648	7.99238256758427	0.0769915533170128	0.776244940999707	0.94480820353868
Merged-chr8-73354431-4	chr8	73353950	73354950	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-910.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.56926002351751	5.11685577340169	5.07761799809655	4.88671868039679	4.71371124981506	4.82666779790549	-0.298330639305244	0.478542601932406	0.823834402333981
Merged-chr1-151035578-2	chr1	151035078	151036078	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42143.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	3.79868789190911	3.44576618420904	3.89404267307657	3.7484983467476	3.59528003646316	3.71690469920448	-0.117702700319297	0.835762402658553	0.961841448068673
Merged-chr15-73184064-4	chr15	73183569	73184569	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	878.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	7.17634595056216	7.58821488778452	7.09944598382711	7.27982101659438	7.19607157942675	7.1180675265718	-0.169370579302755	0.517522506878334	0.844597786295928
Merged-chr2-150675125-4	chr2	150674634	150675634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6894.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	5.77087979980118	5.54850648052792	5.40755677633849	5.45170710633308	5.61712846312162	4.96558151429324	-0.379836101338699	0.321301199695393	0.714837665357421
Merged-chr11-87045643-4	chr11	87045141	87046141	+	886.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025638, intron 5 of 9)	intron (NM_025638, intron 5 of 9)	28496.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	6.01939277776418	5.90128397398765	5.97461122256152	6.0463921813307	5.86933490647756	5.73445808176422	-0.123606009370458	0.682483870094387	0.915096086868746
Merged-chr2-126712699-3	chr2	126712190	126713190	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5362.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	6.37774462682947	6.68184171139108	6.43487041901308	6.70094574057221	6.81270455548027	6.60257799259116	0.323934425924477	0.231088215513228	0.626862757919563
Merged-chr4-59550379-4	chr4	59549868	59550868	+	829.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	6.32908754185658	6.67277604421463	6.10755486398108	6.34156344136573	6.63665546093901	6.45849372793367	0.138641757266293	0.648152304594865	0.901703040183932
Merged-chr7-24208066-4	chr7	24207523	24208523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019940, intron 1 of 3)	intron (NM_019940, intron 1 of 3)	126.0	NM_019940	56707.0	Mm.448367	NM_019940	ENSMUSG00000087598	Zfp111	-	zinc finger protein 111	protein-coding	4.70876393406338	4.67878427742696	4.76429903714013	4.70897682556346	4.44855962441923	4.79232216582966	-0.161561067048057	0.696495716637795	0.919491129354085
Merged-chr4-59407957-4	chr4	59407461	59408461	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 5 of 16)	L1MA5|LINE|L1	30672.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.10739097641693	2.93821224268073	2.77255602935138	3.10825607957276	2.73596944991188	3.26748832540731	0.473426510026744	0.531067711448655	0.851378188817981
Merged-chr2-152805547-2	chr2	152805047	152806047	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	URR1A|DNA|hAT-Charlie	22942.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	7.82935665780514	8.04018763571585	7.66995310095257	7.80902213527841	8.07313199505404	7.42785674200079	-0.0751477160732051	0.779128928991553	0.945710994231145
Merged-chr15-30609312-4	chr15	30608820	30609820	+	916.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-429806.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.27962445270502	4.29471311857725	4.13577380746756	4.40451706363207	4.24129546327731	4.51455481673284	0.368626995359904	0.420287282833617	0.789521469804967
Merged-chr12-32292183-4	chr12	32291666	32292666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83517.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	7.1068757701391	7.67514555675007	7.36785175629137	7.51300583857379	7.69423913747609	7.45720403486691	0.225783905975703	0.392482081541538	0.771172125304963
Merged-chr16-30975385-4	chr16	30974867	30975867	+	876.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	106065.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.69631640183575	7.11511146942707	6.87632620272661	6.50011013687365	6.66356950311085	6.62555964764821	-0.486639015949699	0.0723357398371723	0.353203414843505
Merged-chr9-113837202-1	chr9	113836702	113837702	+	577.0	f0_balb.idr	intron (NM_001286600, intron 3 of 34)	intron (NM_001286600, intron 3 of 34)	24616.0	NM_001286602	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	3.16779693327773	3.41111610641632	3.35773482654208	3.13661205859295	2.78059918977162	3.26452980616493	-1.05438254947365	0.137501325198959	0.495624554674513
Merged-chr8-80265128-4	chr8	80264639	80265639	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207131.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	4.36648599192756	4.01991550339477	4.53142105104896	4.4087220895621	4.2270901288193	4.35133237007418	0.0369079075456179	0.938436758980191	0.986400619504607
Merged-chr10-99012898-2	chr10	99012398	99013398	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 15 of 21)	intron (NM_001359507, intron 15 of 21)	-94184.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	2.70593685619369	2.47013663011639	2.72973327828783	2.60265204340016	2.57707840105725	2.68051687779863	-0.107051344782346	0.889222995026398	1
Merged-chr1-52100657-4	chr1	52100163	52101163	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308266, intron 18 of 24)	intron (NM_001308266, intron 18 of 24)	-18775.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.93311457616415	2.75963308422646	2.71267272526542	2.88166163979094	2.9498577161242	3.25829452979174	1.08213151465575	0.140162135759122	0.500409770025813
Merged-chr3-142559757-3	chr3	142559255	142560255	+	922.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	-289.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	6.63424487807717	6.48398094067389	6.68279441822346	6.71420112272691	6.94521247815003	6.99974283931154	0.457847905310758	0.0788097914949311	0.370868463259694
Merged-chr10-67247344-3	chr10	67246859	67247859	+	849.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 22 of 25)	B3|SINE|B2	37922.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.40078694387656	2.29519388078326	2.6089026283244	2.4253391831926	2.25873720878215	2.49838894831761	-0.267080138052734	0.749735750902378	1
Merged-chr15-101859926-4	chr15	101859429	101860429	+	749.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001003667)	TTS (NM_001003667)	-9143.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	3.28057131790078	3.09319050888723	3.23421430425999	3.70021297744191	3.64940773429327	3.93755055359861	2.1520191186262	0.000592451632695553	0.0120294571628432
Merged-chr7-80387236-4	chr7	80386729	80387729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010194, exon 2 of 19)	exon (NM_010194, exon 2 of 19)	717.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	6.98824476805374	7.19615897775253	7.47242269944079	7.2810471838057	7.68112654487367	7.50000133423641	0.405693803577424	0.125899684651258	0.474643086904141
Merged-chr11-49204547-3	chr11	49204033	49205033	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	1033.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	7.5289683064956	7.33935703171642	7.21431664357047	7.41510305781958	7.42164381852161	7.21026922862622	-0.0226439092452317	0.92528199425139	0.983166193538686
Merged-chr5-140612926-2	chr5	140612426	140613426	+	819.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 5 of 7)	intron (NM_008494, intron 5 of 7)	5585.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.42334210595186	3.70018731921222	4.486476397242	4.05818370295996	3.5043719331989	4.51642344465376	0.353933928667276	0.755477967739789	0.939315847504439
Merged-chr15-79355758-2	chr15	79355258	79356258	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	ID_B1|SINE|B4	7356.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	3.18751411112492	3.24012424078125	2.96115314291944	3.35339070031352	3.19212381281744	3.33827814373576	0.630305110352114	0.336418390964306	0.726422770866952
Merged-chr16-75871810-2	chr16	75871310	75872310	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	37456.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	5.1960415100045	4.69690042925259	4.88465670998118	5.47884710520085	5.6033341983932	5.45951139531457	1.15506434412021	0.00235932648485616	0.0350311988136886
Merged-chr7-30231882-4	chr7	30231398	30232398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027259)	promoter-TSS (NM_027259)	-176.0	NM_027259	69920.0	Mm.440028	NM_027259	ENSMUSG00000019738	Polr2i	2810002B19Rik	polymerase (RNA) II (DNA directed) polypeptide I	protein-coding	5.74428880075303	5.94395514641262	6.31640878342231	6.12061308699057	5.87648072286801	5.65449819048027	-0.19103254001486	0.574990889796228	0.87094931637326
Merged-chr3-95282474-4	chr3	95281967	95282967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199475)	promoter-TSS (NM_199475)	-391.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	7.52697623561371	8.02390991291627	7.78976920065969	7.54669557691949	7.92831902640434	7.54479124841241	-0.151958554168682	0.564240191624674	0.866239190108782
Merged-chr14-120910979-4	chr14	120910476	120911476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-218.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	7.52533615244143	7.45261328943247	6.97822637371557	7.4354700118604	7.04616476786594	7.03649253978102	-0.240073504700806	0.392740846467373	0.771317512104823
Merged-chr17-24724450-4	chr17	24723933	24724933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026684)	promoter-TSS (NM_026684)	-45.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	6.61234264873282	6.35522637646227	6.56886468448967	6.73692461482167	6.86865985361988	6.59365412278291	0.367861475861381	0.170394138152309	0.547769223545867
Merged-chr5-72169931-2	chr5	72169431	72170431	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1742.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	5.16726972769814	5.09076407581707	5.55580612142176	5.12601056395623	5.40523394699848	5.56536520322578	0.196399569470907	0.601994679120361	0.882187830872038
Merged-chr4-141605479-1	chr4	141604979	141605979	+	1000.0	f1_c57bl6.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	573.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	5.7316433234827	5.43294771154471	5.3318912944925	7.1776366614833	7.52744884379816	6.87307568739466	2.80714859022051	4.07777352735856e-17	1.69651689832226e-14
Merged-chr19-34519827-4	chr19	34519318	34520318	+	951.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7656.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	7.50670241099531	7.680479322998	7.56123316942909	7.57270410704237	7.93756483846665	7.80598285005662	0.285895654824217	0.223151799274279	0.617965684228516
Merged-chr16-87496892-2	chr16	87496392	87497392	+	601.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_040375, intron 1 of 2)	Lx|LINE|L1	819.0	NR_040375	414095.0	Mm.166361	NR_040375	ENSMUSG00000093606	B130034C11Rik	-	RIKEN cDNA B130034C11 gene	ncRNA	4.16670548958321	4.23334048247179	4.20662075567244	4.37879572082653	4.37227338829785	4.27501056673023	0.387900527300493	0.389185395402913	0.769015431167891
Merged-chr7-99833952-2	chr7	99833452	99834452	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5535.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	2.95706014150765	3.37391605258219	3.3032414543331	3.44275055608786	3.40322213033671	3.48485208757364	0.858196549133079	0.187133617747946	0.572089925767512
Merged-chr4-66796938-4	chr4	66796454	66797454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30597.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	6.25299648195671	6.36703760540338	6.00451741713887	5.87262787998059	6.15662516812798	5.57455986430158	-0.541455304043787	0.102838855156748	0.427594216464255
Merged-chr5-31700054-2	chr5	31699554	31700554	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	2004.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	3.41521744504159	3.62734634705294	3.27852396888648	3.78485609527124	3.5805177313848	3.47430779570312	0.591417155998628	0.328864219713409	0.721038398138001
Merged-chr10-128673228-1	chr10	128672728	128673728	+	588.0	f0_balb.idr	intron (NM_173733, intron 1 of 3)	intron (NM_173733, intron 1 of 3)	690.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	3.44696630607734	3.477733708303	3.22242135881763	3.47764331247483	3.16357024226894	3.46848975144961	-0.0761058130735808	0.903392289606108	0.977827650905621
Merged-chr13-46180891-4	chr13	46180398	46181398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92823.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	5.33972055327399	5.52562819101652	5.68813840578796	5.5307320691961	5.5968741825847	6.08402127859472	0.42864460478688	0.227743202813392	0.622885856743146
Merged-chr5-112283320-2	chr5	112282820	112283820	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	B4A|SINE|B4	6629.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	6.0926300602703	6.276288249918	6.24751114567441	6.32076045472716	6.19311735459854	6.36548518605441	0.138356087102918	0.620594803638527	0.890226052842025
Merged-chr9-22072583-1	chr9	22072083	22073083	+	559.0	f1_c57bl6.idr	intron (NM_012029, intron 8 of 8)	intron (NM_012029, intron 8 of 8)	-1207.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	2.63196877546858	2.76578567062404	3.20652879606734	2.64061684730154	2.61919468121523	2.95521769325027	-0.710337914984805	0.369828374684898	0.754352114878
Merged-chr17-42939667-3	chr17	42939167	42940167	+	917.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63243.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.12002318950537	6.09271808830427	6.07332414395226	6.69806864756105	6.55287470802322	6.54993037885285	0.83056885164281	0.00208133836831022	0.0318815062124231
Merged-chr9-107645197-2	chr9	107644697	107645697	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	2.63847677160479	2.25041525220868	2.3576829121788	2.67752724893249	2.32616563179784	2.7564303300652	0.98340340857281	0.270995616114652	1
Merged-chr14-70767698-4	chr14	70767193	70768193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-1065.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	5.9727489671833	6.16945856106316	6.55030907577431	6.42739348205529	6.67660213364821	6.43673446903897	0.464427516878431	0.127795692823057	0.478001618646991
Merged-chr17-5316735-4	chr17	5316227	5317227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 11 of 19)	intron (NM_001085355, intron 11 of 19)	102040.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.30148065405447	4.12145495884384	3.98241199629945	3.86868779277915	4.26151191152072	4.00158919690737	-0.236343152432162	0.64434581516494	0.900183224748554
Merged-chr7-114080600-2	chr7	114080100	114081100	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	37181.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.95509346967617	4.07245863915536	4.09115687796936	4.23071695091882	4.3574464967757	4.34099880996401	0.763884476827647	0.102040549784589	0.426011468016632
Merged-chr2-32090585-2	chr2	32090085	32091085	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4943.0	NM_145521	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	3.1062062702296	2.81344621833393	3.12531026706108	3.071202756971	2.80056205237904	3.70162405319178	0.919581900248515	0.23244063548539	0.628761339174128
Merged-chr9-99090673-4	chr9	99090195	99091195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 6 of 23)	RSINE1|SINE|B4	49516.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.68567772588689	7.98327542311497	7.34517927018841	7.78111948047372	8.00212058803313	7.40242362613254	0.0781401077605791	0.78526055937291	0.947850129107983
Merged-chr10-8874179-4	chr10	8873681	8874681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.22773386572668	7.9084226912748	7.92644999129815	7.850630917888	7.75660646275174	7.51484589997312	-0.445727340759111	0.0619609440758924	0.323230697232844
Merged-chr2-91459291-3	chr2	91458790	91459790	+	570.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172668, intron 1 of 37)	intron (NM_172668, intron 1 of 37)	1759.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	2.57347195292814	2.23242236977129	2.29340596931606	2.61077170344714	2.26890844752736	2.56933353601539	0.68467382048218	0.439862460382194	1
Merged-chr3-133526513-4	chr3	133526017	133527017	+	964.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	L1MCa|LINE|L1	17873.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.06885592347383	5.19363743456322	4.87720904516072	5.00484166691885	5.13106971638766	4.69492781797465	-0.1937545088239	0.62673990357944	0.892916235446326
Merged-chr12-17740701-1	chr12	17740201	17741201	+	663.0	f1_balb.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	49892.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.15169978158181	3.19743521180502	3.62831478366893	3.25525811374669	3.33019994619364	3.49906322198023	0.105181192713753	0.869780104917093	0.969901645415424
Merged-chr1-138174747-3	chr1	138174260	138175260	+	744.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	366.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	8.6772157892388	9.25299297859604	8.36525058686379	8.77495096192313	9.21466904421749	8.57256748407219	0.0834157884918497	0.783723519844557	0.947280426244754
Merged-chr8-22873388-3	chr8	22872907	22873907	+	718.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	13868.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	2.88465037780346	3.04213550574509	3.24047072696558	3.01961237905083	2.84747501421911	2.84567343670126	-0.710961142226814	0.312909387561502	0.707540429021071
Merged-chr1-172588683-4	chr1	172588188	172589188	+	926.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029084, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	1880.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	4.14665283885903	4.20988764439542	4.29775351471259	4.3786976230051	4.62883765845008	4.79865931618083	1.0108389966979	0.0250650645970933	0.187319372641903
Merged-chr13-41467943-2	chr13	41467443	41468443	+	892.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	B4|SINE|B4	19417.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	7.08643794877273	6.95180468427802	7.31910543893243	6.69188397859753	6.49848931674955	7.07205330646289	-0.549319344843007	0.0549072979491219	0.301071039774871
Merged-chr10-17510456-2	chr10	17509956	17510956	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-212772.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.11623642047396	4.33635356669902	4.06610149758582	4.74416757337585	5.05370945416145	4.39483925154615	1.46132402616348	0.00248590347741196	0.0365674670834299
Merged-chr10-117711538-2	chr10	117711038	117712038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-780.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	5.23406164510725	5.32384854331105	4.68651228431294	5.16938108738278	5.17200411877639	5.00343387997357	-0.0089450224553371	0.982393568367121	0.995997217680293
Merged-chr5-125361213-4	chr5	125360713	125361713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-20119.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.56425488356517	4.06767767757926	4.08606635816621	4.51219194886679	4.39776179907439	4.25657198203296	0.331043756938982	0.500771780757418	0.835242909787083
Merged-chr10-94121341-2	chr10	94120841	94121841	+	709.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-26590.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	2.67218942198303	2.68890122425737	2.85243820035481	3.39212680379628	3.33175113716251	3.65842878367022	4.06368734933207	7.41103479350436e-06	0.000310462752898319
Merged-chr13-23764808-2	chr13	23764319	23765319	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030609)	TTS (NM_030609)	1151.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	3.8179573338221	3.59579764526493	3.71996019258798	3.7463354966751	3.80219494390946	4.12118595069943	0.571295822695235	0.292748258918273	0.689885476081214
Merged-chr12-79580104-2	chr12	79579604	79580604	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282753.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.05221241444942	3.75848588432211	3.64849323628409	4.10298369087842	3.83646946400378	3.72162466320687	0.19179223752221	0.729430097209729	0.930624810693619
Merged-chr1-86429500-2	chr1	86429000	86430000	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	3171.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.10620005735552	3.16923364676478	3.35343798241741	3.00128552923463	3.33869219509017	3.14441456662732	-0.141688498447426	0.830490000951872	0.960308134590845
Merged-chr17-30575363-2	chr17	30574863	30575863	+	993.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	924.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	6.17012080302513	6.59937690787794	6.73431654073499	7.43542928937293	7.79837725604734	7.58805260436296	1.67241226674049	2.42535784781601e-09	2.4914713061861e-07
Merged-chr15-17597298-7	chr15	17596814	17597814	+	939.1047359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	772313.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	3.48563912608083	3.3726483162887	3.44021470366799	3.55266840407407	3.39210487142439	3.34030727353948	-0.000845730034030947	0.998853929007957	0.999803170071745
Merged-chr17-70828721-2	chr17	70828221	70829221	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18056.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	5.1217059896429	4.77167165267281	5.16131768484576	4.7247601626855	4.7585892073028	5.19369003148419	-0.273908924038052	0.508262007021975	0.839782864977849
Merged-chr4-134245587-4	chr4	134245066	134246066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024215)	promoter-TSS (NM_024215)	25.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	5.93537374302748	5.72128720058299	5.78931826597979	6.21876500848375	5.97811094810819	5.36733801568643	0.167146671534142	0.645463135068934	0.900561664422279
Merged-chr5-16470055-4	chr5	16469554	16470554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83441.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	6.66005146466249	6.81098715766744	6.36627137811319	6.47820965818663	6.83703429383676	6.59442139620915	0.0261791325263908	0.927284463480914	0.983584626679457
Merged-chr12-55019553-4	chr12	55019070	55020070	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33234.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	4.96408772032312	5.38750290670534	5.5165517689679	5.56349975240691	5.55138200006442	6.02476641872359	0.796051127684189	0.0354899557399358	0.231285106297664
Merged-chr4-152296135-2	chr4	152295635	152296635	+	736.583313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C2|LTR|ERVK	-1079.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	2.48432610421245	2.37925608024096	2.61350596831042	2.59472645205678	2.55106376423168	2.74738769564808	0.81219054267313	0.302210764637613	1
Merged-chr5-105586903-4	chr5	105586408	105587408	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	67437.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.67490411968251	4.27068004249252	4.13654449437405	4.00382794886135	4.19930113585305	4.15735241538392	-0.715911631213006	0.148794756816409	0.514713316919423
Merged-chr16-4894389-4	chr16	4893883	4894883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8283.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	7.05852597515722	7.24251246714363	7.14894746045098	6.919591222775	6.82325300003202	6.84350066009152	-0.445303253899991	0.0655337248229041	0.333907667452554
Merged-chr14-50936694-6	chr14	50936150	50937150	+	922.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-5801.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	5.08004634375287	5.05106941516426	4.79135353408033	5.38060612337041	5.52339285585819	5.3922222151734	0.903596310444479	0.0127522001149437	0.119316885996203
Merged-chr5-122647045-2	chr5	122646545	122647545	+	984.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	3134.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	5.94904085127714	6.03299364192318	5.60842372743149	5.60457422633792	5.20513583286107	5.36550290598972	-0.905062783690842	0.00888651693192496	0.0927649355001395
Merged-chr1-85090504-1	chr1	85090004	85091004	+	889.0	f1_balb.idr	intron (NM_213615, intron 5 of 6)	Lx2B2|LINE|L1	19349.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.60844356250562	3.50723349556057	3.44093488998776	2.79614088885412	2.67578277394407	3.29326437048968	-2.30844270045609	0.234815076507892	0.630945615851348
Merged-chr4-44911160-3	chr4	44910657	44911657	+	610.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-70237.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	3.1719528385344	3.11561697223277	3.1891349415642	3.16427351733599	2.89170139372301	3.14611123965788	-0.400478129361157	0.545264923274232	0.858059274547204
Merged-chr15-19857449-3	chr15	19856962	19857962	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	672089.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	3.66819572720749	3.90169957464897	4.02982847886785	5.86788337953392	5.93222726363673	5.72314411743991	5.57855849769182	4.00739759676807e-18	1.99669185168789e-15
Merged-chr11-60932944-4	chr11	60932416	60933416	+	736.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	859.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	6.43739436252562	6.68874148282759	6.79784576217219	6.41191138736303	6.63698076844672	6.28800197328821	-0.287692325189633	0.312273257643441	0.707056878336701
Merged-chr2-29628046-2	chr2	29627546	29628546	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	8326.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	2.90754079259901	2.92166321200833	3.06645075945758	3.04640395530262	3.0078437377382	2.83517385340042	0.0340494659614486	0.960549598805677	0.990386809359123
Merged-chr11-60802286-4	chr11	60801782	60802782	+	788.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009171, intron 3 of 11)	PB1D10|SINE|Alu	8983.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	4.41766658985616	3.98876525234161	4.48468976152909	4.15266651018217	4.48982993977125	4.29742851174398	0.0449066135600485	0.927365352327887	0.983584626679457
Merged-chr16-52062087-4	chr16	52061598	52062598	+	737.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	30549.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	6.55866089913735	6.6849932281797	6.14278214758157	6.14490078016459	6.61863810254539	6.24820292705489	-0.208572026853866	0.511209155676098	0.841331921585713
Merged-chr17-33810440-4	chr17	33809951	33810951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357162)	promoter-TSS (NM_001357162)	-72.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	3.93226531033696	3.47962867822041	3.76736514423698	3.2257412352877	3.13379183627277	3.31540144471709	-2.17955931070164	0.000819424601151363	0.015418969292764
Merged-chr7-68070762-4	chr7	68070245	68071245	+	967.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	L1MD|LINE|L1	118488.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	3.77890547853111	3.98615803756492	3.75468496206244	3.56152251652713	3.32665282264228	3.82451479108523	-0.922231659827247	0.11468811441683	0.452186398382538
Merged-chr13-47226077-4	chr13	47225597	47226597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	MER54A|LTR|ERVL	32094.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	7.70209797077174	7.62934600467648	7.3984071012578	7.59352998545617	7.40087478927519	7.6263659797839	-0.0730150619140719	0.756668921502525	0.939658940068982
Merged-chr11-5955152-2	chr11	5954652	5955652	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	-606.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	5.69055969146756	6.05665405958062	5.89345998321302	5.99424997072603	5.82771709375291	5.93084983542533	0.0446323786530381	0.885917645014622	0.973636976161493
Merged-chr10-80407854-2	chr10	80407354	80408354	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1033.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	4.13983130351566	4.16777819578588	4.17673541536438	4.2650809073388	4.28771155359124	4.33440883517056	0.367151397081108	0.419479378951488	0.789041508359604
Merged-chr5-34368687-2	chr5	34368187	34369187	+	593.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	3.85618486039161	3.9786970385497	3.73656863378084	4.01471713593304	3.82589081925917	3.96278790119703	0.202573936497286	0.695021624629342	0.919230570201314
Merged-chr6-28293378-2	chr6	28292878	28293878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31777.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	5.46511441644817	5.50831962979735	5.73576609236291	6.12399771773519	6.00779812452104	5.82350366685268	0.778824900838771	0.013439708680936	0.123411348720628
Merged-chr15-75908386-2	chr15	75907886	75908886	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 1 of 9)	intron (NM_029663, intron 1 of 9)	958.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	4.19474760215628	4.25406930862392	4.32088129986526	4.33301951687761	4.25025058704511	4.10972708053118	-0.0415707074889465	0.927990423419258	0.983759092435667
Merged-chr14-19777051-4	chr14	19776531	19777531	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25774.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.17239249560135	6.46902631187263	6.21298128417463	6.12288063602475	6.16324840139738	5.88167140269092	-0.382122592944603	0.199313203909389	0.587746298743231
Merged-chr5-140756853-1	chr5	140756353	140757353	+	544.0	f0_balb.idr	Intergenic	Intergenic	32726.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.52924068225351	2.33166085432452	2.44726796403673	2.11551019057647	2.02753234988825	2.32924982313278	-2.15835363029913	0.027534204748917	1
Merged-chr10-17565458-4	chr10	17564955	17565955	+	848.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157773.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.48832621498629	3.47059394334826	3.41557580468034	3.34134291792391	3.30372061077164	3.37463831855764	-0.476636924582594	0.418341562675112	0.788588731807313
Merged-chr13-112673386-3	chr13	112672882	112673882	+	840.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	12616.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	4.41922526985682	4.18514383142628	4.18490941597853	5.17564021022538	5.29190279906013	5.13111875549225	2.18356190432329	3.07849607901569e-07	1.92020615999054e-05
Merged-chr3-106560275-4	chr3	106559771	106560771	+	999.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	B1F|SINE|Alu	-12469.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	5.58860705520919	5.15293735500918	5.74981357736621	5.43727468355753	5.65017540003228	5.73773104465949	0.189640703200823	0.600469507778868	0.881684892224841
Merged-chr1-140261358-4	chr1	140260865	140261865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	15108.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	3.32952974892706	3.53461001173405	3.56860984553066	3.36722913181882	2.84213964016365	3.3169834461078	-1.1437328065272	0.106352046822171	0.435370516185142
Merged-chr9-13525873-4	chr9	13525378	13526378	+	932.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94111.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.90532036097265	5.65731845788837	5.72023467870682	5.18775494633633	5.47897809174848	5.59700328029364	-0.633091833133535	0.0616659888281866	0.322143621196368
Merged-chr1-166430091-4	chr1	166429598	166430598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20270.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	5.21854020481846	5.52357677894124	5.29955704090809	5.9982529906107	5.75806553970258	5.18803435802428	0.645730141493962	0.093656748081104	0.407604513537973
Merged-chr4-141742107-1	chr4	141741607	141742607	+	755.0	f0_balb.idr	Intergenic	Intergenic	-4568.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	3.37120272361153	3.41782437268691	3.46590785916415	2.90763310031419	3.00741192760042	3.02502412931244	-1.96049916067836	0.00398962473412398	0.051821267768272
Merged-chr17-28894550-4	chr17	28894051	28895051	+	748.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-10714.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	3.11818196955796	3.00466296216651	3.10470369970693	2.91279575202305	2.88807306321476	3.44219818257319	0.104906586160024	0.882347469297897	0.973137626421094
Merged-chr12-112760515-8	chr12	112760025	112761025	+	996.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178911)	promoter-TSS (NM_178911)	-130.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	6.04586738994882	6.2505077269482	6.38037197752119	6.59096859262539	6.42576893004211	6.32525033966371	0.378343947065442	0.183283434878821	0.566370113618187
Merged-chr5-34535636-2	chr5	34535136	34536136	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	B1_Mus1|SINE|Alu	-7729.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	7.37510277757148	7.40081829657133	7.49393019153881	7.2837757526217	7.38729608437233	7.22488472828117	-0.171663308440557	0.45297560776845	0.809518779450112
Merged-chr11-55154690-4	chr11	55154159	55155159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2953.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	6.46691617902001	6.47456171244911	7.01513526071555	6.76010792407804	6.70884305115073	6.99770169697632	0.244065926268964	0.407515547669416	0.781633737084177
Merged-chr2-92065476-4	chr2	92065003	92066003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41333.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	5.11653232048171	4.64797916282734	4.7283926095681	4.77168841587273	4.63933035616631	4.58681179310857	-0.421702788798072	0.319980547484252	0.713841334732408
Merged-chr17-25188476-6	chr17	25187970	25188970	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197024)	promoter-TSS (NM_001197024)	70.0	NM_001197024	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	6.66587157752728	6.05377547813507	6.30556176932805	6.81258984035284	6.07090183367086	5.84917361573617	-0.0789645928545894	0.83677962055421	0.962001762335242
Merged-chr2-26122772-4	chr2	26122295	26123295	+	723.50415	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026495)	promoter-TSS (NM_026495)	16.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	4.20119451869728	3.71721052732597	4.10092333276581	4.22352921424226	3.92106652260206	3.76058506551655	-0.106202162101332	0.846966365276961	0.964139319360833
Merged-chr2-128804355-3	chr2	128803871	128804871	+	849.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13932.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.77856332962692	5.82159846477876	5.58796107710149	5.87285126685259	5.81493602658867	5.65106615577923	0.0850300525703485	0.786162558288262	0.948387301921707
Merged-chr15-78591035-2	chr15	78590535	78591535	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6012.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.3756511940374	4.1269731437402	4.07681207205113	4.55323678517461	4.33046817805395	4.33962614412848	0.544919761711976	0.243520393137047	0.640762890053044
Merged-chr4-132019144-4	chr4	132018650	132019650	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	29928.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.36139300976391	6.33414511690336	6.21918431833761	6.65284792693499	6.64986627095455	6.32176343835366	0.4045006100422	0.144521833666384	0.507249872852426
Merged-chr4-115828972-2	chr4	115828488	115829488	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	896.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	5.29145811656293	5.06141386371098	5.75433857233626	5.57723056698928	5.27998369400675	5.56599053356939	0.169761292656027	0.659008622732039	0.905178188485902
Merged-chr17-26716345-4	chr17	26715863	26716863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 1 of 8)	CpG	713.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	6.91056233293199	7.01587299426719	6.86623753121303	7.21391535468369	6.84289138835937	6.57906685729087	-0.0339716671177598	0.903980603571375	0.977942118728037
Merged-chr8-75096544-4	chr8	75096003	75097003	+	699.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 2 of 4)	PB1D10|SINE|Alu	2885.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.91802702279536	4.56993148011067	5.23693828647148	4.62422992766992	4.85757762299129	5.08852818078044	-0.135211958319318	0.758375503808953	0.940121252394213
Merged-chr6-39507623-4	chr6	39507111	39508111	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 3 of 18)	intron (NM_172477, intron 3 of 18)	50223.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	4.56343732487263	4.66685746865524	4.83787505428267	4.25125439864804	4.32518763793468	4.48614092281913	-0.839040889256696	0.05365335447516	0.296952794942737
Merged-chr2-22806120-2	chr2	22805620	22806620	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	31793.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.49002637732405	5.73471967445015	5.79943683585424	5.6914700490405	5.68946753889125	5.811891044327	0.0954877966639497	0.764623475774806	0.941983059468209
Merged-chr8-126422462-4	chr8	126421976	126422976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174987)	promoter-TSS (NM_174987)	-25.0	NM_174987	67892.0	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	6.79003932021115	7.07202373460928	7.14000722460719	6.85615402974044	6.93617124406421	7.08782603362193	-0.0695700283293919	0.787098170311961	0.948693859994902
Merged-chr17-64615640-4	chr17	64615147	64616147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13998.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.79601180086525	5.86267266832769	5.62059535776516	5.59806447579985	5.6162727855576	5.41500986430846	-0.402367917517204	0.211280126786609	0.603801482675221
Merged-chr15-100599529-4	chr15	100599032	100600032	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304965, intron 1 of 10)	CpG	452.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	8.21880170063896	8.14249035782021	7.68900826365089	7.84880342382154	7.7813695437861	7.85943436392747	-0.308694537559691	0.203993680974077	0.594245037514532
Merged-chr6-135250801-3	chr6	135250291	135251291	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080553, intron 1 of 5)	(A)n|Simple_repeat|Simple_repeat	-2907.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	2.46850383147383	2.70809578689181	2.64278874558243	2.24889604677577	2.19058443489792	2.46655081570245	-2.14844193280288	0.0190896710156179	1
Merged-chr11-119300119-4	chr11	119299610	119300610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138669)	promoter-TSS (NM_138669)	-67.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	7.61335037864398	7.75625941371059	7.48520737517326	7.53831267635486	7.56656567327025	7.44788343736834	-0.15576057869545	0.494048433548498	0.831815174927983
Merged-chr15-5241483-1	chr15	5240983	5241983	+	611.0	f0_c57.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2704.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.83893415306511	3.66193397748687	3.74705348795237	4.4563016175612	4.17742497434502	4.08269028738293	1.4991093409662	0.00372431638693434	0.0493460060388587
Merged-chr11-70433385-4	chr11	70432894	70433894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	814.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	8.40131007550782	8.14629652279383	8.08321437972102	8.16718802102728	8.49527651825019	8.08866105012632	0.0677516384649721	0.776184866232487	0.94480820353868
Merged-chr4-117199535-6	chr4	117199058	117200058	+	834.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16934.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.74131835296303	6.83835417297608	5.85068243960318	4.21162830518939	4.26036938296611	4.64805747763828	-4.76628391554165	1.5211830825797e-21	1.30489280345661e-18
Merged-chr16-90995474-6	chr16	90994973	90995973	+	878.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	15622.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	6.56377355312447	6.40738717566099	6.55466659084202	6.61098453236756	6.70182470310803	6.43344049102623	0.140896687478557	0.597680210981387	0.880455475375358
Merged-chr10-128806763-3	chr10	128806163	128807163	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359824, exon 2 of 7)	exon (NM_001359824, exon 2 of 7)	987.0	NM_001359824	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	5.34057035720033	4.84198246374648	5.28868268254103	4.87527181464475	5.1660878739949	5.2607434264997	-0.131160925952556	0.742157638593138	0.935148294749195
Merged-chr11-110716558-2	chr11	110716058	110717058	+	760.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	237218.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.6942114803667	2.62454171157283	2.85503567949173	2.97402774937374	2.77123871539064	2.74328605028324	0.586977161581039	0.425573846440823	0.793186380294816
Merged-chr13-91132194-2	chr13	91131694	91132694	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025770, intron 3 of 7)	MTB_Mm|LTR|ERVL-MaLR	91793.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	2.67680802139124	2.51453135619967	2.63705285154747	2.41838261566497	2.49320299252816	2.38750799463887	-1.04889808802917	0.196644139073502	1
Merged-chr15-83148513-4	chr15	83148001	83149001	+	861.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	PB1|SINE|Alu	877.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	7.64498542271383	7.96245809551097	7.96333879121921	7.67294937791132	7.6150439026489	7.91571260369503	-0.183825558200072	0.440993313354183	0.802167900847268
Merged-chr4-118106904-4	chr4	118106376	118107376	+	939.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	28070.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.53022528419608	7.79449772646021	6.94717411209013	6.32821142541223	6.4033282211458	5.70715427865236	-1.98367020433354	3.69702376636479e-08	2.95602697036672e-06
Merged-chr6-30391004-4	chr6	30390489	30391489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311086)	promoter-TSS (NM_001311086)	31.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	5.72520684070158	6.36280255598329	5.95627882179753	6.22777128935622	6.47501437346771	6.08875670905195	0.389678747865623	0.244815995515132	0.642242554852863
Merged-chr11-69546952-2	chr11	69546452	69547452	+	954.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 1 of 85)	intron (NM_001081330, intron 1 of 85)	2156.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	3.54735295291559	3.4776199166924	3.45100238663383	3.14332086018314	3.16010013233241	3.46795382784388	-0.940195586595152	0.129884969465979	0.482062192102398
Merged-chr8-115707950-4	chr8	115707466	115708466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1072.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	7.14997716286479	7.33550451311654	7.13547922070272	7.58844292950277	7.7050685486587	7.58900742312561	0.612723047129463	0.00784188282368577	0.0848460403589662
Merged-chr11-116021473-5	chr11	116020967	116021967	+	865.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008211)	TTS (NM_008211)	3037.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	5.46369843000879	5.0764981196312	5.01354371360817	5.04881766930958	5.35109458420384	5.04246248531487	-0.0870623629948514	0.822976917642199	0.958203585272257
Merged-chr5-5420221-6	chr5	5419684	5420684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-39933.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	8.22596481161402	8.50645566760034	8.03899294401123	8.29014209462904	8.61701204948883	8.25499853027555	0.175192315976325	0.47405256956144	0.821247104271739
Merged-chr16-25038199-2	chr16	25037699	25038699	+	804.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B2|LTR|ERVK	-21440.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.98732598502511	3.92943394513523	3.66621589620145	3.94143563991469	3.62204943042429	4.13569029393895	0.105947348095779	0.849200140599322	0.964608802978311
Merged-chr2-76648183-4	chr2	76647689	76648689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-195.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	5.74485599398026	5.66465156134178	5.68648856420791	5.69639211450468	5.57330021129381	5.69555813910413	-0.0888221565242045	0.775550113277468	0.944682505926692
Merged-chr7-44998665-4	chr7	44998089	44999089	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045611, intron 1 of 7)	intron (NR_045611, intron 1 of 7)	941.0	NM_016849	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	6.53488264361058	6.63505069834317	6.62043198774971	7.00335685883852	7.18460537057933	7.06170390133163	0.762549801453567	0.0020861803218336	0.031903490575102
Merged-chr9-15711179-2	chr9	15710679	15711679	+	847.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	1441.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	3.59266091375433	3.50039698648611	3.65560605709386	3.61089039677821	3.16687703253888	3.51563963913976	-0.52067922217069	0.39413809912244	0.77206906441863
Merged-chr2-154713763-1	chr2	154713263	154714263	+	546.0	f1_balb.idr	Intergenic	B3|SINE|B2	56737.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	4.7990622581063	4.45079173864888	4.94645338518994	4.11333801134374	4.10842479373148	4.50791573135154	-1.25721850751789	0.0081159973166054	0.0869356211019699
Merged-chr12-4237632-2	chr12	4237132	4238132	+	763.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3605.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	5.58557803232124	5.83859530783626	5.72918280658198	5.77699443226947	5.76583363875456	5.57056389066807	-0.0145567427974264	0.963506296248646	0.991116725160803
Merged-chr11-94355084-2	chr11	94354584	94355584	+	770.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029600, exon 26 of 31)	exon (NM_029600, exon 26 of 31)	27083.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	3.05383613482595	3.11997695268495	3.13741122388252	2.99218115351265	2.88693634432392	3.52335652555307	0.234234101696079	0.74078778836318	0.934667811508694
Merged-chr17-65606883-2	chr17	65606383	65607383	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	6672.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.29255560950279	4.02950157488219	4.54216340797629	4.47358053976428	4.30292838379543	4.36228723417731	0.227222306939347	0.631206200732055	0.895063064307722
Merged-chr9-44380570-2	chr9	44380070	44381070	+	855.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021395, exon 2 of 26)	exon (NM_021395, exon 2 of 26)	1080.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	5.20479513698098	4.83302392509271	4.82932386926347	4.86504188588531	4.89930430971589	4.85682799220055	-0.218718535130509	0.580191350536165	0.87276422265422
Merged-chr8-11497546-4	chr8	11497049	11498049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026995)	promoter-TSS (NM_026995)	-19.0	NM_026995	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	6.38100225183745	6.08024668396653	6.52287286113916	6.40874089244988	6.09151906152119	6.12337111887437	-0.194692708189067	0.521254193616902	0.84693755135567
Merged-chr13-45094016-3	chr13	45093492	45094492	+	744.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91896.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.79167721931785	2.80649500922287	2.98062527567081	3.75757091067299	3.81731730758393	3.37999730401493	4.28266088910136	1.54897985129804e-06	7.94508715410425e-05
Merged-chr15-94545018-4	chr15	94544530	94545530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1370.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	5.7399224266742	5.84640974869237	6.10493674292712	6.07353243245307	6.18592229625661	6.16519556243945	0.430455128026241	0.150403720508658	0.517247822505929
Merged-chr1-55237153-4	chr1	55236670	55237670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175439)	promoter-TSS (NM_175439)	-7.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.66693288780543	5.80436805041492	5.58587927962008	5.31839605388674	5.34840601639254	5.13985877432642	-0.790964188641953	0.018822090032408	0.15529484059659
Merged-chr11-114670807-2	chr11	114670307	114671307	+	648.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	ID_B1|SINE|B4	2026.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	2.9250652962775	2.74852520928749	2.97179868086522	2.93997649686396	3.13655146177428	3.21506760737372	1.02686852760383	0.140170850384331	0.500409770025813
Merged-chr17-81666771-2	chr17	81666271	81667271	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	71616.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.63929833826	4.66901210451866	4.50326339074071	4.98602901437446	4.81278834344229	4.74099425823017	0.557238874792332	0.168772491941109	0.545438812408496
Merged-chr13-20184513-2	chr13	20184010	20185010	+	847.25	f0_balb.idr|f0_c57.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94003.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.71912172825258	5.72209855919006	5.68080295341456	5.59262417095399	5.77669225607734	5.81929621868343	0.0415548900342886	0.893723403462276	0.975265071347118
Merged-chr13-69559323-2	chr13	69558824	69559824	+	856.125	f0_balb.idr|f1_balb.idr	Intergenic	ERVL-E-int|LTR|ERVL	-25460.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.75652416704039	3.45285040776766	3.45313337676854	2.87468799389567	2.84430403475664	3.05348695170867	-3.16101708632528	4.0704295223485e-05	0.00132754572469048
Merged-chr11-76459440-2	chr11	76458942	76459942	+	884.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 8 of 21)	intron (NM_001346670, intron 8 of 21)	9023.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.27691011428861	5.18030556709001	5.39307191380159	5.21503615173165	5.30443350172187	5.24133364840717	-0.0453284772744305	0.895997426457081	0.97569173539301
Merged-chr6-129401226-2	chr6	129400726	129401726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3929.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	6.37800806480008	6.44003149032396	6.38736377563471	6.72142713188321	6.97837876193785	6.57653204970953	0.601655603053849	0.0268562182736172	0.195149088298938
Merged-chr3-94443301-4	chr3	94442763	94443763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030116)	promoter-TSS (NM_030116)	-73.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	6.27605872012382	6.45010368972686	6.32975044580613	6.58183352357809	6.47468582597093	6.53714213440693	0.281945219988645	0.290252071032999	0.687914273855354
Merged-chr12-8640312-2	chr12	8639812	8640812	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	-33822.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	4.40617701693687	4.33985100911866	4.46082775892567	4.34495239411981	4.68689883452754	4.48548441344545	0.307558128974165	0.485027770444465	0.827320846708454
Merged-chr13-77049674-3	chr13	77049189	77050189	+	787.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134071, intron 17 of 20)	intron (NM_134071, intron 17 of 20)	85779.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	4.07964888443704	4.40664287873031	4.31061209848609	4.30555476042312	4.22975530919817	4.4205243874428	0.111817648363412	0.809646414193308	0.954749848816598
Merged-chr16-87689439-4	chr16	87688922	87689922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9532.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.25462623013025	6.39630675108726	6.70669689944969	6.19560417376445	6.41068920909971	6.34598064754556	-0.21825722464791	0.453356483840161	0.809761744660326
Merged-chr3-95638631-2	chr3	95638131	95639131	+	620.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	13651.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.80555917344657	4.01587754129004	4.66284639687627	4.00961679897536	3.78570975186428	4.24195982176828	-0.521249086260592	0.364830262303197	0.750028369485675
Merged-chr7-80889779-1	chr7	80889279	80890279	+	709.0	f1_c57bl6.idr	TTS (NR_027976)	TTS (NR_027976)	11490.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	3.01744038858238	3.1626371478678	3.00828382357191	3.15954333404039	3.15931567576359	3.14158487517983	0.375905147372244	0.562863642146566	0.865755360453189
Merged-chr14-62277950-2	chr14	62277450	62278450	+	680.0	f0_balb.idr|f0_c57.idr	intron (NM_173419, intron 1 of 1)	intron (NM_173419, intron 1 of 1)	15029.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.06951651538068	4.87159414198077	5.20363245348204	5.02988594112339	5.1658851322468	5.17164360956445	0.164269525752776	0.658016176011171	0.904920006599558
Merged-chr3-28805877-2	chr3	28805377	28806377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154889, intron 1 of 3)	intron (NR_154889, intron 1 of 3)	369.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	8.46248689814146	8.89596357395373	8.2860216165493	8.30355946802823	8.50643232543128	8.07203652965166	-0.373520826770852	0.152745528536635	0.52113255570558
Merged-chr3-96575710-4	chr3	96575220	96576220	+	842.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8919.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.1570211044	5.72180192989894	5.69546194306495	5.61778915286876	5.54272226632655	5.43501062289988	-0.632056257883375	0.0617656446099575	0.322562967219315
Merged-chr6-86772847-4	chr6	86772352	86773352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2262.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	8.01069282567883	8.07631324248831	7.11378259848977	7.13114953255446	7.2140733491355	6.61612528042683	-1.15682546376655	0.000648198909193408	0.0129031901521926
Merged-chr11-118229001-3	chr11	118228508	118229508	+	765.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	PB1D10|SINE|Alu	-16266.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.42420343928457	6.37676830754344	6.47314242731663	5.99947051792355	6.29518084341124	5.79065915551248	-0.599948215758558	0.0487360427994672	0.280270139557541
Merged-chr7-132576367-4	chr7	132575870	132576870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016978)	promoter-TSS (NM_016978)	28.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	8.66293809715211	8.59929226823226	8.33886687529065	8.38356010074474	8.37323530722972	8.25629302994008	-0.285240732979433	0.183123328072418	0.566103278680597
Merged-chr17-63450466-2	chr17	63449966	63450966	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	50114.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	2.85767808467855	3.16133692863713	2.96582594680834	3.30043764945911	3.16139974336654	3.38778894132416	1.20110765868854	0.0787715847666243	0.370868463259694
Merged-chr1-127272327-2	chr1	127271827	127272827	+	876.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 2 of 17)	ID_B1|SINE|B4	67341.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.2503095096514	3.8694601167182	3.91135501594866	3.93497765681227	3.62377717571609	3.93107513877997	-0.598847905307928	0.267197810680503	0.664564203589996
Merged-chr11-115187903-4	chr11	115187412	115188412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	425.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	9.27544086001493	9.16827601261046	8.79406934768503	8.87932600392711	9.29559115351298	8.64211305862148	-0.169290383521832	0.518989805745132	0.845553410018032
Merged-chr1-87623430-2	chr1	87622930	87623930	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3118.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.9816929115337	6.79566994786076	7.10533050627217	6.85936349291113	7.22856969696672	7.12613780979521	0.186692528745377	0.47541405991985	0.821929811663097
Merged-chr3-50406951-4	chr3	50406448	50407448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	36665.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	4.11563707641114	4.04898831796462	4.59623279317463	3.42792880737318	3.59254125568972	3.83343284867943	-2.03984073306874	0.000486925134617136	0.0102937161080342
Merged-chr4-102608272-4	chr4	102607760	102608760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177980)	TTS (NM_001177980)	18417.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.418745786692	6.37587114026763	6.33999885073264	5.80242415057144	5.83710691117228	6.16315952852957	-0.761255478305988	0.00911968799094599	0.094428944543384
Merged-chr8-91059364-2	chr8	91058786	91059786	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-10771.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	2.6528495681924	2.46776043436345	2.97450130639301	2.50694501779164	2.35743527345996	2.88007572585052	-0.607409811580056	0.478635625949878	0.823838216369461
Merged-chr1-93342857-4	chr1	93342370	93343370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-82.0	NM_080850	269224.0	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	4.52366448657527	4.69204818396396	4.688734874811	4.72362228472279	4.55788304102879	4.55190698916681	-0.0508088290197151	0.902329640697753	0.977439591001363
Merged-chr4-134916872-2	chr4	134916372	134917372	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1956.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	4.94889448779395	4.88249338844742	5.46265825158612	5.10654006105765	5.19469789612954	5.26944915678476	0.166987949257798	0.670708161308065	0.910085853137887
Merged-chr6-125162141-4	chr6	125161655	125162655	+	910.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302779)	TTS (NM_001302779)	3618.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	3.70956493324263	3.56807651359831	3.57352265059457	3.76612234793337	3.64346740252603	3.80184688968802	0.384837972285416	0.480144456900993	0.824511705242598
Merged-chr5-112972481-4	chr5	112971983	112972983	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 3 of 20)	intron (NM_001285806, intron 3 of 20)	43055.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	4.95792894843379	5.03841654693504	5.2330125901763	4.6521390486237	4.90626965083876	4.78403894921998	-0.62067849908383	0.113708337764118	0.450459120580686
Merged-chr8-119574571-4	chr8	119574087	119575087	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	613.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	6.24934244591865	6.54707325110403	6.34647879279614	6.28962385181597	5.74308200354504	5.85041251771454	-0.683122702112156	0.0329705202826503	0.221314218431653
Merged-chr6-87923837-4	chr6	87923340	87924340	+	927.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 4 of 6)	intron (NM_173737, intron 4 of 6)	9864.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	3.97129194735234	4.09642102376828	3.89101405613346	3.85795967170181	3.94212869266562	4.01016072055177	-0.176393462889978	0.724716153710596	0.929459725191008
Merged-chr5-114775558-2	chr5	114775058	114776058	+	889.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027872)	promoter-TSS (NR_027872)	418.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	5.61939510443464	5.53278096211573	5.77881898201145	5.47970512485218	5.32398245335708	5.37630725664991	-0.470897214726103	0.154086941199926	0.523241150332653
Merged-chr2-167260607-4	chr2	167260106	167261106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20069.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	6.06686498660758	5.70085164665826	6.06173134839416	6.24982745281532	6.01670308221499	6.01014273702288	0.257547729424561	0.407066041238293	0.781263634491412
Merged-chr6-54737872-3	chr6	54737379	54738379	+	738.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56255.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.03829097743756	2.99013625245128	3.28241249780158	3.02330128291405	3.10665679444372	3.13180727333376	-0.0666971399759591	0.919521449874527	0.982034101943453
Merged-chr10-62228934-2	chr10	62228434	62229434	+	693.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	2284.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	4.24119463147198	4.30150559272443	4.16575733975934	3.90274176073566	3.93935673644382	4.32128545630682	-0.520413922547917	0.291498299923857	0.689089386291402
Merged-chr1-180313778-2	chr1	180313278	180314278	+	568.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A1|LTR|ERVL	-16698.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	4.20255833228716	3.67985916559592	3.99857463577074	4.25243658854027	4.17369978027865	4.38440209136202	0.817689009691866	0.11484490460326	0.452465739350451
Merged-chr7-141480995-4	chr7	141480491	141481491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	4611.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	3.37524362124328	3.28617509427569	3.42643966293509	3.40395716839341	2.88007316319933	3.27599586735878	-0.643407761166513	0.346241323431258	0.734515828466387
Merged-chr4-134928967-5	chr4	134928450	134929450	+	855.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2030.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	4.37770694748249	4.31968466718479	5.16188506873479	4.65966923756273	4.89922250497017	5.33495584830089	0.703014850127354	0.164647183897638	0.539208350811795
Merged-chr16-85172581-5	chr16	85172048	85173048	+	938.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	1159.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.80374296493268	6.10630159583771	6.04621832152189	5.85741221773719	5.70716506838404	5.82706419119565	-0.347013734377798	0.259226912275469	0.656825376873982
Merged-chr7-19322291-2	chr7	19321791	19322791	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-12246.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	5.25515020973899	5.22174210588827	4.8322727722446	5.39379817808237	5.33742085963472	5.13183532446616	0.340050868820355	0.366369691037973	0.751414573623063
Merged-chr16-90676704-3	chr16	90676163	90677163	+	725.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50708.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	4.30270122895044	4.48038889647837	4.5433271212139	4.32750628438929	3.99783747302083	4.0256999350832	-0.856241703945238	0.0726390780651184	0.354034185184722
Merged-chr14-8098721-2	chr14	8098221	8099221	+	756.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	510.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	7.35334639344449	7.32584139880357	6.98048627940869	7.39410479464579	7.13711895087671	7.31668659307305	0.0652902603445386	0.79629844682058	0.951410019719943
Merged-chr17-81537640-2	chr17	81537140	81538140	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	200747.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.79189556456333	4.98288507671942	4.90434148215084	4.97234207831599	4.89307505286139	5.32354578237322	0.363073398488599	0.355328397719967	0.742280982557685
Merged-chr11-62248616-1	chr11	62248116	62249116	+	819.0	f0_balb.idr	promoter-TSS (NM_007413)	promoter-TSS (NM_007413)	-368.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	2.44796482004924	2.4505967716621	2.90173634953707	2.39629638496847	2.63099522878892	2.56200410326849	-0.440810038460397	0.597982545589548	1
Merged-chr7-73619221-1	chr7	73618721	73619721	+	794.0	f0_balb.idr	Intergenic	Intergenic	-60826.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	8.81497851224811	9.5233614577141	8.70940704463136	8.78202287318897	9.36938339928139	8.64780740515332	-0.132015193027082	0.672080963295974	0.910719060610024
Merged-chr16-50429539-2	chr16	50429039	50430039	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 1 of 16)	intron (NM_027444, intron 1 of 16)	2850.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.26043185219322	3.69341332244087	3.7482905040389	4.25349689755024	4.01416413424386	3.98281757409901	0.450695958830575	0.417457151664969	0.787998790311898
Merged-chr6-83654303-2	chr6	83653803	83654803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 3 of 6)	L1MA10|LINE|L1	1813.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.01400970922543	7.61695207139032	7.43040064552012	7.32156712078403	7.36148369611629	6.97846850072019	-0.208671599081645	0.459047697167448	0.813375481603532
Merged-chr14-30551167-2	chr14	30550667	30551667	+	665.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	2036.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	3.44113101486445	3.77352601573223	3.37052023447377	3.33508472825093	3.6059316604043	3.85357646239068	0.230110025666991	0.713833584799331	0.925599802465018
Merged-chr6-83137062-3	chr6	83136527	83137527	+	756.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009106)	promoter-TSS (NM_009106)	-57.0	NM_009106	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	3.48122445345123	3.61363845661695	3.4044970834632	3.09113408772829	2.82410801437024	3.06155047222406	-2.37158869706311	0.00082246401112288	0.0154613661787449
Merged-chr5-106709773-4	chr5	106709269	106710269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12939.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	3.6130135348967	3.99567738870225	3.55623872035782	3.73324341593125	3.79124627207794	3.68488159434674	-0.0207613380592321	0.970784074169468	0.993560292853483
Merged-chr12-111678061-4	chr12	111677564	111678564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-41.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	7.24604316641624	7.64724336070277	7.61377709579178	7.46344219962915	7.89949467128807	7.28207903833164	0.104980777091875	0.707679943771891	0.923504801393744
Merged-chr1-85608574-2	chr1	85608077	85609077	+	958.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013817, intron 1 of 16)	intron (NM_001013817, intron 1 of 16)	-4686.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	4.55720030079701	4.76669314145227	4.47772091567491	4.32928341525623	4.47847236840704	4.27037528123556	-0.605912869390311	0.171295521160463	0.54932102877065
Merged-chr12-70477413-2	chr12	70476913	70477913	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	AT_rich|Low_complexity|Low_complexity	24259.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.74067795306509	7.90154610546829	7.95501108858091	7.83144892875655	8.22033359301752	7.94294622750957	0.210585999908517	0.367962521774666	0.752923975674939
Merged-chr12-69516710-4	chr12	69516214	69517214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41164.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.87761771003347	4.82416607897818	4.80130073447082	4.95918889277075	4.57701018659158	5.17352420334684	0.170822029878197	0.682499825504764	0.915100674772977
Merged-chr3-108199495-2	chr3	108198995	108199995	+	826.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028061, exon 3 of 3)	exon (NM_028061, exon 3 of 3)	1339.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	3.21374677192663	2.99094614324826	3.14515069004809	2.85004146195487	2.93163463744197	3.21635704065725	-0.526324440160696	0.44552798837415	0.805194667777499
Merged-chr5-137072776-3	chr5	137072248	137073248	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-476.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	3.74929256615085	3.53219099886281	3.6457065735981	3.71232858832782	3.84076812673689	3.71637341584379	0.390437322999298	0.472770766712366	0.820550293768681
Merged-chr12-85281384-2	chr12	85280884	85281884	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	-949.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	2.90059361625945	3.02134747202292	3.0025662507314	2.95724635773503	2.95557832480381	2.89310082095159	-0.179890541819651	0.791090734223365	0.949694766870106
Merged-chr9-78587567-4	chr9	78587048	78588048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	497.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	7.19397260396634	7.29860037105514	6.92437984308624	6.88408730678642	7.10559612739315	6.9539033780032	-0.2544189388767	0.319513908132386	0.713488854059233
Merged-chr2-84524206-4	chr2	84523694	84524694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17321.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.93336388022336	6.73633697061148	6.42070632786005	6.88442393361203	7.16697484245343	6.70114914906226	0.336905846010911	0.24777872811857	0.644825479202461
Merged-chr8-22699617-4	chr8	22699111	22700111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	6972.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	5.1596789463549	5.05234892586715	5.51382111223847	5.28313882854027	4.92307415241775	5.49621439286487	-0.00625733961682831	0.987424490881691	0.997218304929226
Merged-chr11-87405225-2	chr11	87404725	87405725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053269)	promoter-TSS (NM_053269)	160.0	NM_031386	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.82795988401651	8.1803722281759	7.38526109278389	7.49205171169105	7.99537587140143	7.41956605060953	-0.252789675268196	0.408848217492467	0.782383854304252
Merged-chr12-113146256-4	chr12	113145762	113146762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347443)	TTS (NM_001347443)	5657.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	5.64655865824147	5.27613884022391	5.19039324971965	4.30879725656489	3.90482782931739	4.34097382799428	-2.96230705480718	2.50572200312299e-10	3.0393019888609e-08
Merged-chr13-95842140-3	chr13	95841610	95842610	+	920.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	49812.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.00299551699253	3.02805627980867	2.98227868020934	2.93740277005157	2.75793357720086	2.8718642812085	-0.738976277932718	0.287334756608949	0.684646786401232
Merged-chr6-136660045-4	chr6	136659561	136660561	+	947.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	1832.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.71478117771627	6.85115026461617	6.62537724511712	8.01225374275231	8.24133323646625	7.6030355958247	1.84027129165193	9.54368426410821e-12	1.54581484304863e-09
Merged-chr8-123212046-4	chr8	123211530	123212530	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	758.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	6.4740703935616	6.4158281843775	6.18932837070329	6.79144525889934	6.86202625314083	6.00816872300205	0.402649311499322	0.231887366570612	0.628047783269563
Merged-chr6-83502850-4	chr6	83502368	83503368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4101.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	7.29755745547263	7.19429543457038	7.03574072718043	7.11509400007503	7.37453662397372	7.25695121069477	0.105095979519502	0.666933511833348	0.908463623849139
Merged-chr13-37312740-4	chr13	37312243	37313243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32602.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.35780169583747	3.32586334532839	3.49584753049358	3.2300173531148	3.32410249507915	3.46071466335309	-0.2064891259507	0.73179142906932	0.931535693390145
Merged-chr4-40143369-4	chr4	40142869	40143869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007386, exon 1 of 21)	5' UTR (NM_007386, exon 1 of 21)	104.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	7.90288321282414	8.23594173470075	7.98159226504589	7.95583825266752	8.02208077682541	7.86509738772532	-0.140369212459953	0.533886127231609	0.852774784993909
Merged-chr18-60804968-4	chr18	60804478	60805478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	1129.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.53846619388572	7.43392797524066	7.51404058557324	8.36215777326897	8.83062044208221	7.96107632854001	1.3444816161066	1.36892105722239e-06	7.14937990131665e-05
Merged-chr9-118747960-3	chr9	118747456	118748456	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36264.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.38936957570845	5.36083143040187	5.15829971974106	4.62636914343073	4.33926448798055	4.47734099381687	-1.88517284674277	2.95486182472226e-06	0.000140043115007521
Merged-chr10-68759403-4	chr10	68758888	68759888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	35642.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.74543462412515	3.55141653143286	3.82138597102838	3.80342437455697	3.71774091025707	3.73915353613253	0.159833170473887	0.766832695042571	0.942573703853445
Merged-chr13-22029282-3	chr13	22028810	22029810	+	573.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6333.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	5.18908529816856	5.30608070634118	4.87814500219731	4.89480850699738	5.24452929810948	4.86502072827238	-0.251919731934125	0.528792560283253	0.850585575598857
Merged-chr5-62764005-2	chr5	62763505	62764505	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	2172.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.45761479205641	6.63432043616074	6.07389988968546	6.61986405706711	7.00482653684048	6.29701897067949	0.424573599103634	0.198855622351267	0.587343866831168
Merged-chr1-37001418-3	chr1	37000922	37001922	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-61895.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.47798898180442	5.22609634903552	5.10989602977673	5.44812676004567	5.22112608187107	5.54858420358203	0.226234620259518	0.531735782581599	0.851792887243639
Merged-chr11-84829120-4	chr11	84828617	84829617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	-61.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	7.69863046107318	7.68999086061419	7.34734519716054	7.65736180365402	7.90949539944766	7.5246133533848	0.171499053319777	0.492097229206426	0.830923925591469
Merged-chr7-67443966-2	chr7	67443466	67444466	+	757.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71108.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.50149522640893	4.50405161252472	5.10232242389181	4.39974001176806	4.05065137596963	4.75086006703647	-0.732961203103094	0.149654091006578	0.516117590626348
Merged-chr8-36816246-4	chr8	36815729	36816729	+	907.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-83175.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.23209585601247	5.47214239059071	4.99738717188598	4.81261430633607	4.64837818900922	4.91454985269117	-1.01632021703265	0.00968188767304361	0.0982931319544428
Merged-chr10-22390561-3	chr10	22390069	22391069	+	654.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-12244.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	2.08838825782159	2.23529046690142	2.18342798236995	2.70270844167679	2.51462575748405	2.60074936710381	3.33940936838657	0.00143463740743006	1
Merged-chr2-27743258-2	chr2	27742758	27743758	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	32675.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.4014451867539	5.30018539288838	5.75934445619558	5.33775363666362	5.10026038711523	5.4332574661501	-0.396331663259268	0.277508988216341	0.674707488501667
Merged-chr12-85594433-2	chr12	85593933	85594933	+	914.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4672.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.22420786291672	3.21112332815554	3.1024149696746	3.21177489919499	2.92302494390497	2.78780498290191	-0.861531070002429	0.230275628797717	0.626162780047656
Merged-chr10-80159987-4	chr10	80159497	80160497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	CpG	-7842.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	7.18641171482217	6.77652755189184	7.05342214763023	7.15415869292203	7.39142099918318	6.91674547303633	0.246014736928488	0.370750133378907	0.755026439587207
Merged-chr14-59598000-4	chr14	59597502	59598502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168535)	promoter-TSS (NM_001168535)	-43.0	NM_001168536	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	7.37527368329113	7.3011949968877	7.18500920404115	7.55335712486229	7.39805232926115	7.03039005154397	0.090160012171073	0.725960603451908	0.929743505822386
Merged-chr4-43000581-4	chr4	43000065	43001065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009503)	promoter-TSS (NM_009503)	-58.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	7.48008484438275	7.70507355236453	7.29195665852419	7.36700180017295	7.51853038997545	7.70099595313979	0.0313276984142907	0.900253035619372	0.976731893119283
Merged-chr8-122475272-5	chr8	122474816	122475816	+	927.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	748.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	7.88747672326074	7.9120258636324	7.66077790123137	7.80184971390706	7.76082078260527	7.48829461457871	-0.191040273595052	0.413146843131786	0.784770288990094
Merged-chr2-181459297-5	chr2	181458681	181459681	+	936.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028125, intron 1 of 2)	CpG	245.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	4.15416329603364	3.53815249610278	3.56939873420818	3.89272628592821	3.61975568422388	3.26231279092101	-0.591033525182828	0.615270104089512	0.887866671887744
Merged-chr1-182928035-2	chr1	182927535	182928535	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26753.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.06065565868724	4.08367660407157	3.83481952697389	4.24742348860708	3.89149321067182	4.05877401081619	0.196045450803615	0.700877019120061	0.921028048562707
Merged-chr11-120518823-2	chr11	120518323	120519323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-11904.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	7.94050778674217	7.90760560553862	7.7138903733928	7.92230905480843	8.3118242417245	7.86590033669358	0.277796457061632	0.252533914515866	0.649921954382832
Merged-chr13-9116774-3	chr13	9116271	9117271	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	22890.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	2.72171095343341	3.00948738743772	3.04629346077949	3.12154848897017	3.08554104205253	3.05987910546903	0.73040071753994	0.295666527375962	0.6925798212347
Merged-chr6-122600365-4	chr6	122599876	122600876	+	948.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 1 of 7)	MRLTR33|LTR|ERVK	2068.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.0007328618617	6.997294415633	6.90746215151577	7.53644919540229	7.91568076721233	7.6803447565653	1.11342278542793	4.66055665532607e-06	0.000208560055985639
Merged-chr1-57775096-3	chr1	57774596	57775596	+	962.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144882, intron 1 of 13)	CpG	235.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	3.62354040164532	3.20760021153854	3.65238301432111	3.27808847566305	3.08872616035009	3.04881952938993	-1.46937158936414	0.0290961632511156	0.204837770984063
Merged-chr15-83561306-4	chr15	83560831	83561831	+	954.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-2242.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	4.06333104269983	4.22912567977231	4.06970792363555	4.14841878333369	4.07245642656693	4.27559694383602	0.0979602032536998	0.836879679028777	0.962001762335242
Merged-chr7-34313466-4	chr7	34312959	34313959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-27850.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	6.6694074262787	6.37511971628824	6.43362001201511	6.79430660015837	6.22972485740867	6.01847764301314	-0.166552318461859	0.614197509514037	0.887421941740887
Merged-chr7-45707013-4	chr7	45706521	45707521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 2 of 3)	CpG	1774.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	8.4522669527395	8.81166030740195	8.22931071167492	8.56334359388004	9.04472167869439	8.47655484930129	0.276091684351433	0.307962575688452	0.70396280316158
Merged-chr4-105261064-2	chr4	105260592	105261592	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103745.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.47346166959888	3.3573359816905	3.47620447001486	3.29478762245986	2.98929344026056	3.4405356522792	-0.754532549885045	0.243217954449785	0.640453164779192
Merged-chr4-126254977-4	chr4	126254452	126255452	+	951.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	1367.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	6.06467403090023	5.69746368966112	6.14430212238753	6.36350762638158	6.25613512813509	6.39847965627252	0.614139678096078	0.0420189541042333	0.25664781128276
Merged-chr11-34405495-2	chr11	34404995	34405995	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025382, intron 3 of 3)	intron (NM_001025382, intron 3 of 3)	90673.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	2.3647614151316	2.33094856492897	2.60754475495465	2.56068405802583	2.26046569033883	2.36317141199318	-0.223208077241168	0.791710996145244	1
Merged-chr15-8710569-6	chr15	8710129	8711129	+	951.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_148938, exon 1 of 10)	5' UTR (NM_148938, exon 1 of 10)	178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	5.72484968825717	5.48687677159765	5.41491368505017	6.13948220155483	5.95102924195126	5.99274472111029	0.847240996211578	0.0076845973152869	0.0835952377317809
Merged-chr12-117385895-4	chr12	117385393	117386393	+	875.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48881.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	4.27046278622082	4.71959896153533	4.37569510274261	3.89489579632771	4.08543746757865	4.22003046899092	-1.10052671740393	0.0254401221055894	0.189092292948136
Merged-chr3-96629894-4	chr3	96629392	96630392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025875)	promoter-TSS (NM_025875)	-36.0	NM_025875	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	6.55367731313473	6.74997737041007	6.58242586089439	6.78591914004992	6.88817240336178	6.37842970276375	0.127905539799625	0.650759248901856	0.902668504553081
Merged-chr19-56724608-4	chr19	56724082	56725082	+	986.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	2210.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.72398710983523	6.95569457167424	7.09665510952606	7.30284855877026	7.35467906388402	7.34021273485087	0.611709325859671	0.0130833191803261	0.121389369274906
Merged-chr7-144471264-4	chr7	144470764	144471764	+	924.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007803)	promoter-TSS (NM_007803)	-329.0	NM_001252572	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	4.57552519138861	4.39803031028032	5.21168668384644	4.92196405580434	5.04699188230757	5.15492376745756	0.611695390403101	0.177383225321811	0.558276095490477
Merged-chr1-89454708-4	chr1	89454218	89455218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-93.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	6.52705411631221	6.50618489481757	6.24453808907564	6.48481577428014	6.05255546214739	5.63945382237351	-0.531902900955173	0.121979225528741	0.467165948531506
Merged-chr8-70904249-1	chr8	70903749	70904749	+	827.0	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1725.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	4.80058948572836	4.84910058475124	5.08981805691864	4.92260659916688	4.78146502565462	4.87873323368843	-0.112933580449343	0.771548559025228	0.943614978016208
Merged-chr1-131066640-2	chr1	131066140	131067140	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	B3|SINE|B2	31203.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	3.77547666898037	3.52820784802941	3.80072946903613	3.74893917194464	3.42956981867971	3.9170957364316	0.00522430539713333	0.992799732388156	0.998584818828585
Merged-chr19-10278872-4	chr19	10278378	10279378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25999.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	7.19485988658647	7.19042886489777	7.2145407315865	6.84950853722937	6.61314108160851	6.55224089033169	-0.796002802869667	0.00149276922097232	0.0246449089957668
Merged-chr9-63125363-2	chr9	63124863	63125863	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21617.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	3.85443620147362	3.66362387895258	3.90857170622716	3.77143978015935	3.67229562395043	3.83119288218275	-0.174026823126051	0.743244768426023	0.93555555344166
Merged-chr11-52361532-4	chr11	52361077	52362077	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	CpG	715.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	7.7128107581277	8.20034891582865	7.86077254230111	7.90632194938095	7.91399138546582	7.6535952978064	-0.157833446965828	0.525929722796126	0.849272421520383
Merged-chr8-94011295-3	chr8	94010837	94011837	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 1 of 13)	intron (NM_011787, intron 1 of 13)	1303.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	5.47045026281512	5.42949777009152	5.78925851263882	5.69782584117892	5.39646231543135	5.45114650618587	-0.077294796195206	0.822213816009919	0.958041123079214
Merged-chr4-3651165-1	chr4	3650665	3651665	+	613.0	f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-5341.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.08424884227777	3.9632022045488	4.13109088612879	4.13646687003823	3.96811662736522	3.90756659651408	-0.141614527513016	0.773840693078453	0.944186409608656
Merged-chr15-88129088-3	chr15	88128565	88129565	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-185809.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	7.02502652180107	7.28363600528203	6.92455497628348	4.43667644438768	4.1098587767832	4.8928065206625	-5.88653306107764	9.42306876066515e-31	7.12795186761296e-27
Merged-chr16-85175030-2	chr16	85174538	85175538	+	864.9166869999999	f0_balb.idr|f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1331.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.53041868742803	3.12493683992128	3.52726613874348	2.75493895942992	2.73231217856504	2.8577279897074	-3.32167193494604	7.25979286262085e-05	0.00215894511977468
Merged-chr10-75489896-2	chr10	75489396	75490396	+	866.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	27485.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	3.39105059850523	3.04314211358877	3.05377230858898	3.12154816495289	3.13502903498244	3.24545853128776	-0.0499577094435468	0.939872880661314	0.986750900940844
Merged-chr1-16216779-4	chr1	16216281	16217281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110899.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	2.71742135838833	2.58378244281059	2.64941896792755	2.57158905021805	2.36261904733065	2.32499900619405	-1.38822220712095	0.0995043480027217	1
Merged-chr2-30238537-2	chr2	30238037	30239037	+	771.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028299)	promoter-TSS (NR_028299)	768.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	6.07063002438608	6.07493574446434	5.83482039414351	6.1738386483084	5.84591436010511	5.8965241530513	-0.0458049460256836	0.881627046643848	0.972846584805466
Merged-chr1-91043595-4	chr1	91043121	91044121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-9823.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.41173705057029	5.24772677097979	5.25798448142511	5.41948966333235	5.32491252056902	5.47394021141625	0.179945925299005	0.596553729013264	0.879982319595371
Merged-chr10-69186071-4	chr10	69185564	69186564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22488.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.39285187336231	6.72436123226485	6.64874196695005	6.62080175426884	7.1053227332177	6.94568777213562	0.492407799026144	0.0831665951448835	0.381505377849687
Merged-chr11-78566939-2	chr11	78566439	78567439	+	825.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008702)	TTS (NM_008702)	-16204.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	6.04401819337149	6.59361777530427	6.41643501969946	5.96261731818483	6.29314382024259	6.2057759350873	-0.346014031347042	0.272123469340343	0.66953956602346
Merged-chr4-43454691-4	chr4	43454233	43455233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-107.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	6.29305455175239	6.00201847966252	6.39415887008738	6.01984410573904	6.24971643437078	6.24609237796705	-0.0939218458043233	0.75279499698915	0.938405484786115
Merged-chr17-78382903-5	chr17	78382453	78383453	+	979.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 7 of 9)	intron (NM_001360407, intron 7 of 9)	35199.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.46020975020324	5.33218542353098	5.09418393125652	4.98340259818642	5.16987659862412	5.05156141139199	-0.486495901763777	0.184794079447529	0.568693903493971
Merged-chr2-11548241-3	chr2	11547753	11548753	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID4|SINE|ID	5676.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	4.65825589641278	4.72324978698319	4.57107637289969	4.56710648037303	4.51445045342552	4.71724647088055	-0.150414265908018	0.715442386383558	0.926392907650078
Merged-chr19-53423564-4	chr19	53423083	53424083	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32949.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.08446532798852	4.03564269794047	3.83322456174061	3.67941394233016	3.6707704426273	3.57239804471388	-1.13459336205668	0.035152990335172	0.230081195714823
Merged-chr2-60286267-2	chr2	60285767	60286767	+	642.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-1783.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.80054822191113	4.01207157190306	4.26369862665976	3.78884812659073	3.83464182951128	4.16240012025589	-0.299591814413849	0.574064672953644	0.870523174873875
Merged-chr7-30563275-4	chr7	30562779	30563779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	-61.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	7.35314250899136	7.99575623552795	7.6434800015654	7.70117096144924	7.96817710647175	7.70014344193118	0.149960539235391	0.577361897791837	0.872117086580778
Merged-chr3-54245248-2	chr3	54244748	54245748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	89191.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.72866296746932	3.83147844653808	3.81784096183097	3.86020358751882	3.89569196472417	4.03125887917595	0.42480785023352	0.407013079236297	0.781239776172868
Merged-chr7-145281976-7	chr7	145281304	145282304	+	762.142883	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	2207.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	3.89812942319561	3.6103543787012	3.95191106393724	3.73247073351973	3.71106879450305	3.77661157670099	-0.276258565842773	0.608454973380177	0.885006356798728
Merged-chr6-100288272-2	chr6	100287772	100288772	+	579.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	-914.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.58957389843137	4.56439179207069	4.59501909789085	4.79003976346062	4.36860502312344	4.30674832290748	-0.177143816006111	0.691625213477628	0.918398695262194
Merged-chr7-31208759-1	chr7	31208259	31209259	+	856.0	f1_c57bl6.idr	Intergenic	Intergenic	46401.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	6.08489756276327	6.38425804856168	6.25916648653182	5.84877181763395	5.80306684285238	5.72493023440049	-0.793173572403894	0.00803598890730178	0.0863565239569632
Merged-chr10-99268461-1	chr10	99267961	99268961	+	1000.0	f0_balb.idr	TTS (NM_026268)	TTS (NM_026268)	5230.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.26821646910419	6.32187845524046	6.25143410252217	6.38477380071827	6.43643134415568	6.44601366921648	0.229388662740663	0.390334636095292	0.769585097056154
Merged-chr1-88216126-2	chr1	88215626	88216626	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201642, intron 3 of 4)	intron (NM_201642, intron 3 of 4)	4167.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.5563009882023	3.57309252418103	3.76490170243145	3.4791129554894	3.51669124287432	4.01521708535773	0.182824818919049	0.756242572166108	0.939545863427369
Merged-chr10-128910335-3	chr10	128909829	128910829	+	902.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007653, intron 1 of 7)	CpG	463.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	4.88106498344448	5.31014910191442	5.01046482375396	3.67461542330748	3.5257780393434	3.7300541723196	-4.74904399060724	2.30676795082816e-12	4.16359105536898e-10
Merged-chr5-117388493-3	chr5	117387985	117388985	+	919.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028128, intron 1 of 10)	intron (NM_028128, intron 1 of 10)	538.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	5.81838977406952	5.86828091599037	5.75788644054179	5.88855389380921	5.61546165256784	5.9876655471217	0.0168863309221864	0.957244567264583	0.989925627980654
Merged-chr3-88648308-4	chr3	88647793	88648793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001198911)	TTS (NM_001198911)	4849.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	5.4987065929891	5.5056288980866	5.53708508952819	5.29837498339661	5.43927524890461	5.33224462779177	-0.289030551328498	0.382277276522357	0.763893554872053
Merged-chr4-108619964-4	chr4	108619470	108620470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	14.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	7.29114251486422	7.6844212593885	7.48027177456888	7.09449551070914	7.27499142781956	7.09130051498891	-0.497682045315961	0.0462851830593233	0.272176502614853
Merged-chr5-24069147-4	chr5	24068637	24069637	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31453.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	4.07940599986917	3.76506954326219	4.17018589712863	4.06977106453398	3.90427864594179	4.14884265493073	0.0856340367349421	0.867421173252443	0.969329865332858
Merged-chr5-123869113-2	chr5	123868642	123869642	+	732.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3626.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	2.76690587455919	2.79960212837102	2.82471400359125	3.04994868981971	3.21543896664999	3.14114479430572	1.67693099325055	0.0168112786415725	0.143883241432623
Merged-chr2-152226824-4	chr2	152226313	152227313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007788)	promoter-TSS (NM_007788)	-27.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	6.84319513858596	6.89192440022022	7.08115451218254	6.96868901385792	6.790580815892	7.12638624871482	0.0366695621277409	0.886637566197353	0.973794308941933
Merged-chr4-126968261-4	chr4	126967772	126968772	+	995.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	-349.0	NM_001114399	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	6.05610837189064	5.54207503610891	6.00713937953965	6.13467304005187	5.84638185204664	6.0895997156531	0.245066507843553	0.459538606827993	0.813749779670638
Merged-chr15-99396901-5	chr15	99396440	99397440	+	894.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	ID4|SINE|ID	3721.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	6.07137599872761	6.12354007517523	6.22486512357394	5.59508156154225	5.69950178486665	5.66166136537045	-0.853624958857485	0.0044119323931296	0.0560641524996225
Merged-chr11-117776174-2	chr11	117775674	117776674	+	773.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 6 of 19)	intron (NM_145439, intron 6 of 19)	3474.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.51833636372787	4.5122645106109	4.6503005448702	4.56711750926675	4.0699979157443	4.34293614870475	-0.562070646750168	0.223866628549176	0.618583567117513
Merged-chr10-89443333-4	chr10	89442853	89443853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	614.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	8.71215364323634	9.15978215608063	8.62950270419291	8.3714125974798	8.75282989112199	8.24450653080202	-0.521964324299794	0.0461376094419713	0.271654274444349
Merged-chr16-12763518-2	chr16	12763018	12764018	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-47872.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.21535814463327	3.31626808754404	3.18343996005101	3.45016421589944	3.07626490320032	3.25593777902156	0.104686901788705	0.870571633493387	0.970084781962666
Merged-chr13-81026038-2	chr13	81025538	81026538	+	746.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	RMER17D2|LTR|ERVK	61964.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.74839944811917	3.92836384273323	3.90858994257016	3.85224669124575	3.93939358524482	3.71897461197668	-0.0495688794647521	0.924468700968637	0.982960139621551
Merged-chr11-80179592-2	chr11	80179092	80180092	+	873.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172133)	TTS (NM_172133)	-4280.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	4.16638383008847	4.35476336498348	4.76574943056007	4.30769603777795	4.18934885278472	4.92696768686683	0.153633406487235	0.767799899860813	0.942704220215291
Merged-chr5-64210036-3	chr5	64209522	64210522	+	711.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20335.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.7102559001513	5.61887380036111	5.90433740068556	5.45523917999304	5.24540666752604	5.35855000776936	-0.739741678412902	0.0263607104451531	0.192794409310038
Merged-chr11-53772724-4	chr11	53772229	53773229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	2256.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	5.68993122617815	5.43387483633362	5.65842590922411	6.10292467360069	6.14536909487743	6.01952599865984	0.890064740637301	0.00365343923496138	0.0486626175544528
Merged-chr15-95900069-4	chr15	95899573	95900573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-70001.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.27253654586202	4.46542686761983	4.3261788148788	4.62082645239851	4.6238843608244	4.3949421310955	0.498101799574556	0.255816954674799	0.65280036212337
Merged-chr14-19751201-4	chr14	19750686	19751686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-71.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.15753132623616	6.14771455979132	6.17985476949994	5.60599189021198	5.72709801073565	5.7029937199968	-0.844754682506546	0.00431131645708342	0.0550367812743814
Merged-chr14-14348629-7	chr14	14348129	14349129	+	853.81427	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 3 of 11)	intron (NM_008369, intron 3 of 11)	2134.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	5.06835087944324	4.63711357330826	5.37562195393888	5.37025334054595	5.22275924812628	5.4098273234996	0.578947867992734	0.153782212042155	0.522858730489425
Merged-chr5-143504634-2	chr5	143504134	143505134	+	575.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009007)	TTS (NM_009007)	23359.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	3.24692990252372	2.96726029635506	3.152145238889	2.95374788497376	2.8540454979423	3.22357492385085	-0.513467791473877	0.458413173216443	0.812981239724864
Merged-chr18-82909826-4	chr18	82909329	82910329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1050.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.98649515812457	6.70308815622772	6.64810227723436	6.72480340730995	6.4701570207144	6.15523329700999	-0.49498733714424	0.0952700477541012	0.411334066704195
Merged-chr16-10967138-4	chr16	10966630	10967630	+	940.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	25991.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	3.93654127752478	4.17112554624272	4.16765493259472	3.7809972163309	4.01450882188412	4.05265559764868	-0.412514377965249	0.41409408532352	0.785615201854629
Merged-chr1-154003873-1	chr1	154003373	154004373	+	630.333313	f0_balb.idr	Intergenic	Intergenic	103944.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	4.14746775392532	4.08146309980253	3.92453798492068	3.8782176792066	3.8137761363031	3.78438120748269	-0.715179752358692	0.15882585815094	0.530639711103129
Merged-chr16-90043085-4	chr16	90042560	90043560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68361.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.67184216139424	4.16742293427345	4.06654362994206	3.92797371809121	3.82824638366208	3.75797662911033	-1.43917398386637	0.00734787509642637	0.0809589500825536
Merged-chr13-54072682-4	chr13	54072192	54073192	+	850.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	847.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	5.585698717969	5.64124064620945	5.08847945455588	6.30358711084671	6.33334754998223	5.52378827826907	1.13987719246548	0.00428803725797354	0.0548246779596592
Merged-chr7-12010690-3	chr7	12010134	12011134	+	873.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30665.0	NM_001166731	628946.0	Mm.484974	NM_001166731	ENSMUSG00000095864	Vmn1r77	Gm6935	vomeronasal 1 receptor 77	protein-coding	3.23647075986506	2.84861880355206	3.16561057623986	3.19859869085835	2.73003323797799	3.74267592246479	0.78772113953048	0.325069290249927	0.717958419682432
Merged-chr4-47260538-2	chr4	47260038	47261038	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	52526.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.82281096820319	4.98520685742154	4.76074263089345	4.34293002505591	4.24643778083155	4.54764768933628	-1.20138334014474	0.00477957689585974	0.0593256871013231
Merged-chr19-10843055-3	chr19	10842566	10843566	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023044, exon 1 of 8)	exon (NM_023044, exon 1 of 8)	522.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	8.74204731665009	8.55405269307987	8.32531585603928	8.7452053760855	8.67101999845723	8.52049058999077	0.130169614689479	0.55910862113457	0.864901733108576
Merged-chr7-121120347-4	chr7	121119853	121120853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 12 of 28)	intron (NM_139310, intron 12 of 28)	36915.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	5.31690837199988	4.92190259128414	4.99113559115058	4.99908858901459	4.8092833192412	4.6146975426243	-0.585180762284665	0.150910524208207	0.518112019240653
Merged-chr2-11188469-4	chr2	11187974	11188974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	16092.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.5973839118972	5.39206595497306	5.47487212812719	5.96697672727898	6.04290358244594	5.79103257915799	0.827266321360273	0.00893184814680009	0.0930513610365522
Merged-chr10-99194831-4	chr10	99194325	99195325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68406.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.02671924034455	4.79830111728729	4.78391942453852	5.03717047302942	5.17958746929699	5.00270878228215	0.435537133265189	0.253227771707292	0.650647740495934
Merged-chr1-191097820-3	chr1	191097371	191098371	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-543.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.88547041985843	7.92385294367252	7.72139109634075	7.75886916512683	7.92858164924405	7.7511934193275	-0.0447620948912746	0.839489801771818	0.962784121274377
Merged-chr11-51816534-2	chr11	51816034	51817034	+	606.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	40947.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.28393702383135	3.32354038177795	3.3858765950582	3.07960447822355	3.10761452865953	3.17726999542172	-0.889056638504525	0.158133930793663	0.529823190004248
Merged-chr18-62985876-4	chr18	62985358	62986358	+	859.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028017, intron 5 of 11)	MER102c|DNA|hAT-Charlie	7942.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	6.28693961364755	5.83061348296284	5.95201247957884	6.38676466061514	6.61171274657986	6.03849826189238	0.562650085847238	0.0851402899636606	0.386252608791229
Merged-chr1-6976404-3	chr1	6975904	6976904	+	840.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB1|LINE|L1	-112516.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.43776195769388	3.68701110993904	3.87430706590162	3.72036600982637	3.28880324766537	3.64930366319198	-0.385741115237641	0.525240909074622	0.848918138904843
Merged-chr5-115485406-2	chr5	115484906	115485906	+	810.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133760)	promoter-TSS (NM_133760)	-922.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	4.94046035888952	4.63199511546177	5.45663475887996	5.00396797838062	5.48307641418938	5.26214294035998	0.459949242644763	0.292664217759959	0.689878020096055
Merged-chr19-29254430-2	chr19	29253930	29254930	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2627.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	4.34865102962712	4.12896635251211	3.93031423197134	4.16248608094914	4.26393869112804	4.15403104031449	0.114077389721211	0.815438185666175	0.956370078970016
Merged-chr3-51797027-4	chr3	51796573	51797573	+	819.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135894.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.82917331851782	4.63140336824512	4.70946748653805	4.70260026863798	4.54785503726611	4.88617649783814	-0.042697139402232	0.917422854110937	0.981615488433117
Merged-chr11-32671662-4	chr11	32671179	32672179	+	851.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	29124.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.18865033029498	3.16791016178538	3.22211286252652	3.26592844499452	3.34254052777798	3.61264047189332	0.871566880371329	0.161779816463313	0.534903241209541
Merged-chr3-105688926-5	chr3	105688501	105689501	+	802.273315	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	5.06914427789633	5.1619201328307	5.13771080748417	4.89933870995784	4.80869092484502	5.06894406363753	-0.437243233400186	0.239705748411602	0.636664833817435
Merged-chr16-4964364-4	chr16	4963869	4964869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	81.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	7.38632405590957	7.48846405766044	6.93098327922532	7.40829930573715	7.25798921152119	7.18169273332984	-0.0207661964120352	0.937765272916535	0.98614846613846
Merged-chr16-20535385-4	chr16	20534885	20535885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009679)	promoter-TSS (NM_009679)	-95.0	NM_001302970	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	6.56234655209741	6.83776077640446	7.0200654445528	6.95865635606187	6.95778744881164	6.76742613395823	0.139009200712013	0.604910338700782	0.883260490576483
Merged-chr7-41633549-4	chr7	41633057	41634057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	26.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	7.19039727549288	7.44838539757078	7.46394617359813	7.51130273644875	7.67238860134158	7.38380873118478	0.2402426936579	0.319423081229299	0.713441663792545
Merged-chr8-27262571-2	chr8	27262071	27263071	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	2244.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	2.85103953159836	2.87440569133749	2.90430235250131	2.93571354336603	2.97784858374515	3.36618581433274	1.03991671896534	0.139057144311443	0.498220240435175
Merged-chr8-117538606-2	chr8	117538106	117539106	+	627.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	ID_B1|SINE|B4	40331.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.4520229919527	2.41521592881157	2.66038692466986	2.32563970637485	2.45678186089675	2.55148952374787	-0.381382783997879	0.639207044461941	1
Merged-chr17-53570557-4	chr17	53570058	53571058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	3587.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	6.11602793444901	5.98869592683614	6.2741609902046	6.61020795798678	6.50483187534169	6.37320903396107	0.630490198307356	0.0244660638530107	0.184332872245682
Merged-chr5-123620962-4	chr5	123620462	123621462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 12 of 18)	MTA_Mm|LTR|ERVL-MaLR	-47947.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	4.96846812464829	4.79596020059049	4.6148887040421	5.3001301717122	5.60345038371229	5.63107420514587	1.45204881234718	0.000165739124258341	0.00430156614201123
Merged-chr4-59808637-4	chr4	59808120	59809120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	B3A|SINE|B2	2970.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.602336141956	4.65069906488198	4.52889440542385	4.51728589458261	4.20234414537259	4.46892814976013	-0.510782579033742	0.243017696074348	0.640261028736697
Merged-chr2-117114624-1	chr2	117114124	117115124	+	759.0	f0_balb.idr	Intergenic	Intergenic	-6447.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.92554198852672	4.18094552496505	4.05825033182303	3.93984547486895	3.62883812413274	3.83085261399541	-0.803387921821589	0.125617268119793	0.474191879348443
Merged-chr16-55803180-4	chr16	55802682	55803682	+	906.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18956.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.49934360475988	6.54218946801395	6.50741802937534	6.1835241791718	6.40091179889829	6.1995337315438	-0.397671654557449	0.144467666844864	0.507214386763159
Merged-chr18-32184238-4	chr18	32183736	32184736	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	Lx9|LINE|L1	21147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	3.30472638664392	2.91546191487745	3.09225915525674	2.8528824458722	2.75118489741442	3.048913486377	-1.1372895890857	0.117262863296014	0.457311976431135
Merged-chr12-3657383-2	chr12	3656883	3657883	+	770.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	84399.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	3.30166569349117	3.36389798092117	3.35269549263474	3.0039754458583	3.28532936136768	3.19720678372267	-0.689078738474784	0.283380578754295	0.681331807587476
Merged-chr8-84662393-4	chr8	84661883	84662883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010499, exon 1 of 1)	exon (NM_010499, exon 1 of 1)	469.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	8.61666154695316	8.70837018907562	8.63796139386397	8.61392898053839	8.95114605492202	8.41823037774821	0.0448830361068824	0.846154800566931	0.963961283421434
Merged-chr16-55776505-4	chr16	55776010	55777010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45628.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.89733469525227	3.39251806805296	3.21199831118027	3.72642378031042	3.68287930043104	3.80885778379317	0.666055580446825	0.311861521975105	0.706740025614962
Merged-chr1-37474831-4	chr1	37474339	37475339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	13766.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	7.8154944171995	8.01688148802588	7.66832321087718	7.7909739354049	8.27895635292438	7.93035602915984	0.251482708467669	0.317913510142108	0.711712961469666
Merged-chr8-124663351-4	chr8	124662813	124663813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	56.0	NM_175149	69551.0	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	5.82290857369142	5.47691858685102	5.96879238130507	5.77122311159881	5.28806139903598	5.24003621379554	-0.569388473086341	0.126454599255847	0.475355519288444
Merged-chr19-42004067-2	chr19	42003543	42004543	+	913.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	22280.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	5.74085103431069	5.74016577248338	6.21085264168488	5.81537080403916	5.81417019652247	6.1135827779019	0.0182016230731313	0.956114345643412	0.989807313282509
Merged-chr2-160617433-3	chr2	160616908	160617908	+	814.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28489.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.81299021443356	5.05978987496414	5.15453378349483	4.83057390070228	4.86420688475695	4.95114469633089	-0.286095398584075	0.458321692738462	0.812961658694989
Merged-chr17-34141557-2	chr17	34141057	34142057	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3859.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	3.05316280946489	2.97383069883048	2.97841135743622	3.13354401857523	3.01990809462342	3.28163372637382	0.625415093949531	0.345270939652902	0.733669653925664
Merged-chr19-25139518-2	chr19	25139019	25140019	+	873.5499880000001	f0_c57.idr|f1_c57bl6.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97456.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	3.64391274027445	3.72868584594957	3.60656689643914	4.13075419950229	4.39439988008808	4.32788487076562	1.91798454246308	0.000262443946074542	0.00625535258234618
Merged-chr2-155585641-4	chr2	155585151	155586151	+	987.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291111, intron 1 of 11)	MIR|SINE|MIR	7159.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	5.70830675276617	5.84073165915081	5.66650493835334	5.90783305473425	6.1208138270515	5.55353018089159	0.273157964770711	0.411491437895207	0.783952169517317
Merged-chr12-32910277-4	chr12	32909805	32910805	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43484.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	2.55876453546002	2.55350000121764	2.7106734675743	2.67499887748111	2.61289416187308	2.53174214004893	0.0230082513836512	0.975977038772234	1
Merged-chr5-113918121-2	chr5	113917621	113918621	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-9415.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	6.70207778921932	6.96014984314338	6.73222395472081	5.94162030418984	5.98246515813371	5.91213077823299	-1.40879158316628	4.18797507275917e-07	2.51786871281897e-05
Merged-chr12-83929370-4	chr12	83928866	83929866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7432.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	5.12020839000144	5.11764288774984	5.43919689050621	5.11651728116881	5.26590210108344	5.44570067900493	0.109632796575521	0.763814792163082	0.941828088296049
Merged-chr11-44546413-4	chr11	44545930	44546930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27053.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.89513751289403	7.14492661845029	7.0950351088655	6.98643516163134	7.41110215436469	7.21393573348917	0.259655669086967	0.317476792969071	0.711322568148047
Merged-chr15-102224687-4	chr15	102224222	102225222	+	880.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013566, exon 3 of 15)	exon (NM_013566, exon 3 of 15)	7213.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	3.13280850565309	2.96894466103986	2.91062481122929	2.94128492900197	2.88337020221043	3.10316341846087	-0.172831956057978	0.801094191040033	0.952752818604963
Merged-chr5-130222334-4	chr5	130221825	130222825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-10.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	8.42321766927922	8.40010477790064	8.03628207502507	8.2719120062584	8.19294871275101	7.84191231010336	-0.256301853846583	0.294812508008061	0.691728256671312
Merged-chr4-141672503-4	chr4	141672037	141673037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8422.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	7.14408475824474	7.3417330853739	6.911817153687	6.82685724726268	6.80851112460925	6.67065448649072	-0.579343784780322	0.0262365477038854	0.192325844537477
Merged-chr13-59976135-2	chr13	59975660	59976660	+	905.875	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53551.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	3.74941615030057	4.36911869412371	4.28463069111658	3.36931109606541	3.41133925986892	3.46771963847759	-2.57555781579942	3.78573745835875e-05	0.00125349638852016
Merged-chr3-89911390-4	chr3	89910843	89911843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	1853.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	6.81650919191813	6.65844563285794	6.86447519839502	6.33671736893463	6.55991990731055	7.05223237788919	-0.162860948588253	0.58990009693395	0.877024090368969
Merged-chr7-28387609-2	chr7	28387109	28388109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	PB1D10|SINE|Alu	5081.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	4.77207823402065	4.62406846596656	4.9942936586741	4.81971150484283	4.64003812042842	5.14970736052335	0.178105543534328	0.673810245468917	0.911654130589777
Merged-chr1-143996936-2	chr1	143996436	143997436	+	940.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7213.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	2.89984688588653	2.92723807977751	2.99850261461287	3.02560063623319	3.20141785603084	3.55542970154949	1.46542975289003	0.0343883728948541	0.227076242507342
Merged-chr5-124047188-4	chr5	124046704	124047704	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-14944.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	3.91606147644975	3.35837279905066	3.61045919372688	4.04541799288164	4.05589797219434	3.84776121085083	1.06617674869996	0.0686753294672776	0.34291247310945
Merged-chr7-80773192-2	chr7	80772692	80773692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	30139.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.19408164357889	6.00620053193244	6.07121902546225	5.83668328831222	5.94168272535769	5.90055743362064	-0.344302889562182	0.240125910503496	0.637109682764418
Merged-chr4-9656465-2	chr4	9655979	9656979	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	URR1A|DNA|hAT-Charlie	12683.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.6575269557896	5.29292961699556	4.93605191872023	5.59320370356752	5.70184172099079	5.55574475544694	0.526462115112521	0.16687947800714	0.542410453360082
Merged-chr2-45116781-1	chr2	45116281	45117281	+	1000.0	f0_c57.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	661.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.85464577512782	8.03320262150261	7.83027810769613	7.96155753841666	8.09587223557297	8.11877299833511	0.209416507288066	0.333573677196177	0.724480655178686
Merged-chr11-82015903-2	chr11	82015403	82016403	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19674.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	5.26832204378052	4.70858981208199	4.5101642140916	4.99613834540406	4.61877993910079	4.3327866216105	-0.440077592826276	0.376084280880874	0.758980076211389
Merged-chr4-103282458-3	chr4	103281956	103282956	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163494, intron 1 of 7)	RLTR22_Mur|LTR|ERVK	8407.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	4.86735494015399	5.23009392567564	5.15639784387342	4.0036487751601	3.57395687058021	4.02245852509264	-3.49671615462294	1.40438537208463e-10	1.82302805055254e-08
Merged-chr2-73476918-2	chr2	73476418	73477418	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B1_Mus1|SINE|Alu	8835.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.66437590598172	5.04067907470235	5.25291108493379	4.83784077877726	4.89540170288247	5.37170932109866	0.0995540800842142	0.816229341501376	0.956616423430214
Merged-chr4-101292179-4	chr4	101291699	101292699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26917.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	7.45937203292979	8.15695367179723	7.91505160124458	7.83934241481484	8.03856312569048	7.84425889288922	0.0497642389433801	0.852709485385435	0.965520655090103
Merged-chr3-116858520-6	chr3	116858022	116859022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1045.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	6.44718133742742	6.44937016271059	6.46246765578892	6.37023153032285	6.51326392958625	6.18379594169814	-0.126818916606305	0.644716644895718	0.900287351502017
Merged-chr4-133678625-2	chr4	133678169	133679169	+	916.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001080819)	TTS (NM_001080819)	-5503.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	2.64834189921272	2.64197953246238	2.86980862365498	2.72634590278297	2.56377858759137	2.88399026593283	0.0312469478327258	0.966978654665307	0.992418870149749
Merged-chr19-6362319-2	chr19	6361819	6362819	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1371.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	4.50468160615863	4.51169255741679	4.5293246215581	4.77410818320679	4.84091372680376	4.59687532813457	0.562290670068713	0.171313539009277	0.54932102877065
Merged-chr10-127595488-3	chr10	127594994	127595994	+	809.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	25654.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.45329374647529	8.33792931575314	8.71097166721787	8.50530237266259	8.69051491704651	8.37527924438077	0.0393907157007212	0.862286168566372	0.967996224966109
Merged-chr1-88589192-4	chr1	88588717	88589717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	37700.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	6.93524598165391	6.82627361699838	6.9456309417608	7.02178600395783	6.79014159694671	6.84683731772451	-0.0188257589598748	0.939812524715411	0.986738777817436
Merged-chr11-51859671-3	chr11	51859163	51860163	+	901.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.37278622416375	5.28869161697812	5.71660328428815	5.68001879399146	5.47387758891279	5.67732636976821	0.282913365223332	0.4107654953008	0.78361591427629
Merged-chr19-41305766-2	chr19	41305228	41306228	+	873.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 9 of 16)	B1F1|SINE|Alu	-41724.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.67954100765027	2.87531526967862	2.99391086053279	2.84182318877507	2.53111116726098	3.28111049759915	0.315577632039682	0.696946813463433	0.919770824023241
Merged-chr1-64690189-3	chr1	64689683	64690683	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038009, intron 1 of 1)	intron (NR_038009, intron 1 of 1)	476.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	6.29539835967843	6.81931445399885	6.43027995363598	6.45370558323875	6.86585958123788	6.68153566545833	0.223785393268987	0.459769743995854	0.813919930991856
Merged-chr15-86226392-2	chr15	86225892	86226892	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	11933.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.24819054402661	4.20399945852236	4.54422319833203	3.99093096498756	4.02474124600354	4.33293772175089	-0.595854681532687	0.22075029937784	0.615391011479204
Merged-chr6-114848384-2	chr6	114847884	114848884	+	574.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	73437.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.44923661575508	3.09459649067051	3.2329127050114	3.1771152975732	3.063071967382	3.41480265421922	-0.20123788435792	0.759438213779742	0.94043121249196
Merged-chr10-63291656-2	chr10	63291156	63292156	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030114, intron 15 of 25)	intron (NM_030114, intron 15 of 25)	47379.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	2.72960830812066	2.79118945958471	3.05629479381969	2.53303828324196	2.96827356869059	3.18115599236727	0.255220933753123	0.755191294304836	0.939242515534853
Merged-chr17-79895443-4	chr17	79894878	79895878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357752, intron 1 of 13)	CpG	745.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	7.49225206740167	7.14712022853063	6.86703381194009	7.4137201584101	6.65272350094801	7.05432252846699	-0.185254403851277	0.561746784877208	0.865571255453378
Merged-chr1-132384880-2	chr1	132384423	132385423	+	787.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5395.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.26416319503137	4.39572993971221	4.52075536573475	4.18743695182213	4.28569961577649	4.50733049668268	-0.171703215385172	0.705877766074702	0.922834459892351
Merged-chr6-120157656-2	chr6	120157156	120158156	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-36167.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.8460422046656	3.62843008283157	4.12339070685722	3.48309120986686	3.19401523330374	3.6880363953054	-1.44517754260395	0.0203491249503792	0.163317952275534
Merged-chr3-89394211-2	chr3	89393722	89394722	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-68.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	7.44060407416327	7.53423611699535	7.60641290308753	7.73849320659715	8.15965381513609	7.88652701751678	0.604605359759945	0.0110159122036838	0.107596199394778
Merged-chr6-38959557-2	chr6	38959057	38960057	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	40571.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.45133214292473	3.60866853889332	3.43563976259074	3.60354358797152	3.21776002124548	3.66715245122473	0.00284592373175109	0.996291276242444	0.998961028701257
Merged-chr19-46599693-3	chr19	46599190	46600190	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	584.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	6.3512477380405	6.53679745886987	6.53883224519961	6.36111476678875	6.61899876601753	6.63110029427094	0.10754626164511	0.6929159996956	0.91880752705484
Merged-chr13-105266897-4	chr13	105266405	105267405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 2 of 7)	intron (NM_001360891, intron 2 of 7)	26109.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.76354470632365	3.80614761031778	3.8888226702919	3.85575370087109	3.52012546609109	3.70503369183686	-0.399800949562929	0.462475645977106	0.815272421144956
Merged-chr2-59339159-2	chr2	59338659	59339659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026361, exon 15 of 22)	exon (NM_026361, exon 15 of 22)	47523.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	7.96908585963185	8.29599592299985	7.72839807178763	7.63049263878103	7.93345406437984	7.06181112273008	-0.601590546123179	0.0519035095752219	0.290880317498039
Merged-chr16-92411583-2	chr16	92411092	92412092	+	692.166626	f0_balb.idr|f1_balb.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-11514.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.25742423986724	5.38220650448081	5.34106887068271	4.97692319012316	4.85022798445234	5.2203842401323	-0.657000610872881	0.0726140404116497	0.354018766695052
Merged-chr11-94391815-2	chr11	94391315	94392315	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	1161.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.62356060854732	6.59848248820454	6.74087176864271	6.67018629010547	6.88562233157373	6.87274985873751	0.256109706479316	0.316520214454179	0.710612278530442
Merged-chr9-50970697-3	chr9	50970238	50971238	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	38335.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	3.88644042994891	3.74449396626413	3.82191302737581	3.97808987422229	3.61665365342348	3.73542192187482	-0.11304439779131	0.833942367313956	0.961129638343139
Merged-chr3-153636644-4	chr3	153636155	153637155	+	864.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	88478.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	4.04171795728791	3.76026950008284	3.70520252885695	3.79960222557563	4.24580789891539	4.03672134658894	0.59023790794191	0.277183737637093	0.674414033884588
Merged-chr7-45872822-4	chr7	45872319	45873319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133950)	promoter-TSS (NM_133950)	-21.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	6.21526017509046	6.35748938272778	6.64397359793961	6.55395620821324	6.2790650790549	6.64012667739501	0.135542128561053	0.644615194117365	0.900287351502017
Merged-chr9-61706167-1	chr9	61705667	61706667	+	1000.0	f0_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	208343.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	6.01005963213628	6.03708092378135	5.46468346889959	5.52172399637864	5.57838847963356	5.5289449653263	-0.606437875148408	0.0764894708553423	0.364249750525458
Merged-chr17-55758535-2	chr17	55758035	55759035	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	8551.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	4.64333268357	4.58916170120183	5.10802156900251	4.80817587875466	4.54451769353278	4.91731975240848	-0.0757861373684658	0.862464906133069	0.96807605498315
Merged-chr9-55258042-2	chr9	55257542	55258542	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	PB1D10|SINE|Alu	25583.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	4.98806409753204	4.81227697138929	4.79508884129715	4.63047269330533	4.74186051966202	4.43642178542613	-0.578211086599209	0.162463373594259	0.53589809574695
Merged-chr15-86181518-2	chr15	86181018	86182018	+	901.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-4210.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.86125902997494	4.5675308054642	4.50912065177755	4.90806056335194	4.74223225454285	4.39062915181158	0.104459851173177	0.814271596646996	0.956179328155961
Merged-chr8-126591269-1	chr8	126590769	126591769	+	1000.0	f0_balb.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	2167.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.08164942185252	8.31629454768269	7.81931944806203	7.909298600894	8.25706151938825	7.7789944151996	-0.125647770064002	0.628175556535945	0.893536962720189
Merged-chr10-80165151-4	chr10	80164604	80165604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2735.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	4.23682268679379	3.94395357261542	3.9480860725154	3.78070490370973	3.81105556656321	3.70044518681789	-0.886260058938379	0.0916407089365853	0.403067983359519
Merged-chr14-51247586-1	chr14	51247086	51248086	+	604.666687	f0_balb.idr	Intergenic	Intergenic	8526.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	3.32038199787188	3.47965573008188	3.36736813665722	3.05997494546755	2.95568222422893	3.02834556263849	-1.68822240695107	0.0108786405243672	0.106630924814648
Merged-chr15-79768473-4	chr15	79767972	79768972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017470, intron 1 of 3)	intron (NM_017470, intron 1 of 3)	5995.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	5.95231236472334	6.3801343438698	5.72993219822297	5.83438179920885	5.48450065423916	5.87050598120497	-0.579108947917633	0.0983846190721256	0.418248985017801
Merged-chr6-17616383-2	chr6	17615883	17616883	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20627.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.07166835858631	4.39863116528486	4.00472854982664	4.18332641394283	4.08616124785728	4.43808818845558	0.156643822995735	0.752819729517073	0.938422256650186
Merged-chr3-88592895-4	chr3	88592432	88593432	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13324.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	5.43959891976913	5.82705904455724	6.04073914411193	5.46978077485347	5.4919994064215	5.46218305309909	-0.57197623950584	0.101060571337278	0.423988776066131
Merged-chr17-47873657-4	chr17	47873112	47874112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028767, intron 13 of 16)	intron (NM_028767, intron 13 of 16)	-38921.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	4.48241722594964	4.51448133008866	4.53862727852201	4.27478908792755	4.19284067970333	4.68078719719808	-0.317199724077483	0.486812761886247	0.827985697457807
Merged-chr14-40931308-4	chr14	40930797	40931797	+	979.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	16912.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.90320013243427	6.0624991668258	5.64608613126314	5.54085671930551	5.43313856116149	5.30648430179941	-0.84316697047137	0.011318167347297	0.10978807048658
Merged-chr17-27954797-3	chr17	27954311	27955311	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	45505.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.14362768030509	5.08839149465724	5.02279500715387	4.16562424581387	4.24809908909777	4.60627110306519	-1.79757923641563	2.91120323969295e-05	0.00100304513113197
Merged-chr11-111064823-3	chr11	111064324	111065324	+	834.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.17817116336299	4.14001271423559	4.50176809081937	4.19632684346573	4.0979944335944	4.19032901350607	-0.312360700074954	0.51107201297143	0.841331921585713
Merged-chr2-57238360-4	chr2	57237866	57238866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010274)	promoter-TSS (NM_010274)	-16.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	8.57284599078912	8.6992767965151	8.1770516723536	8.38667308242911	8.64639600877651	8.19805727167308	-0.108752486867199	0.665548003962244	0.907855843812957
Merged-chr7-140954867-4	chr7	140954360	140955360	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	1101.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	7.6900605334118	7.61459057927717	7.80434199647476	7.80080444968066	8.00757886768758	7.86878641321707	0.283875747286867	0.198714030947366	0.587160238692855
Merged-chr2-80315510-4	chr2	80315015	80316015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	49.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	6.88044212983326	6.88334455097712	6.52567553512861	6.71084986033148	6.60388450724433	6.80029398683302	-0.129080997836756	0.629363854501892	0.894187784605027
Merged-chr16-22010869-2	chr16	22010369	22011369	+	814.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357424, intron 1 of 15)	B1_Mus2|SINE|Alu	1385.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	6.04960033434268	6.2715023607872	6.05428882788462	5.47586651990251	5.95904639310012	5.6374720418581	-0.722860547832675	0.0281325097148151	0.200553120192686
Merged-chr5-114813974-4	chr5	114813490	114814490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027817)	promoter-TSS (NR_027817)	-14.0	NR_027817	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	6.83516545295818	6.78383486299211	6.61153039330522	6.6022861823	6.69108459277697	6.10027592403221	-0.389495088343566	0.188559692095935	0.574187552055575
Merged-chr12-79007226-1	chr12	79006726	79007726	+	982.0	f0_balb.idr	promoter-TSS (NM_178745)	promoter-TSS (NM_178745)	51.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	6.65366311917015	6.44960408230817	6.90827497199628	6.66693833762738	6.34168825116884	6.50760164934333	-0.265388725842717	0.35509924892502	0.742091076566031
Merged-chr14-55114895-4	chr14	55114383	55115383	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177049, intron 2 of 5)	CpG	2052.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	2.47376445023923	2.23706271054385	2.48480001430867	2.31481194275431	2.16997560188639	2.36813765538732	-0.786459027841651	0.362189284628782	1
Merged-chr4-119733660-4	chr4	119733147	119734147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-74702.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	5.52266622255736	5.39470163048218	5.65873647157784	5.75864972959956	5.44021696079954	5.64142812599959	0.173922850359995	0.602693634197815	0.882397657327329
Merged-chr9-95693046-2	chr9	95692546	95693546	+	679.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	55418.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.81139167983746	4.92545341972283	4.78739903364365	5.16644580362555	5.1329647295452	5.04165785038837	0.583943063030054	0.117174741550574	0.457182589090321
Merged-chr6-31373218-4	chr6	31372725	31373725	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	25548.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	3.3818815621136	3.07880475535548	3.24432632154101	3.18919814561963	3.42362751709448	3.19893756526959	0.161202455471582	0.802681149719963	0.953313831733603
Merged-chr2-70660962-1	chr2	70660462	70661462	+	548.0	f1_balb.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-547.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	3.22211517489696	3.11301160978655	3.06809220899434	3.29224215831428	3.19183019143305	3.20099009300843	0.381912680221754	0.547649133857924	0.859389836719927
Merged-chr15-27667160-4	chr15	27666646	27667646	+	732.625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	14396.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	5.88953116140162	6.05606438155955	6.28617763913547	5.93287922160213	5.94992968096267	5.84970598517715	-0.282362386698521	0.353549645421207	0.740750337317011
Merged-chr16-91695360-4	chr16	91694864	91695864	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 7 of 11)	intron (NM_026994, intron 7 of 11)	6466.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	3.95065161340519	3.71534640048205	3.98489260163401	3.96756326308965	3.63391880623068	3.69994193184163	-0.352689520341481	0.515892773202502	0.843994531618211
Merged-chr3-40531029-4	chr3	40530527	40531527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8115.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	5.2505059876085	5.26200861656325	5.10663836844584	5.58250591779257	5.69656166214893	5.09857646541848	0.559815954581559	0.132173796788624	0.486197270886281
Merged-chr10-94476367-3	chr10	94475797	94476797	+	723.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-38560.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.26795774610664	4.85783929330702	4.98855353709529	4.96789682827776	4.93326921180344	5.34127787227774	0.0636243071031354	0.873098702535918	0.970371929331986
Merged-chr17-32320819-4	chr17	32320298	32321298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_017476)	TTS (NM_017476)	440.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	6.81375368631326	7.17586604128952	7.19317525713855	7.23497488133374	7.23838729767265	7.1161486534765	0.198318688889997	0.434440774005926	0.798410009305253
Merged-chr13-58552161-4	chr13	58551658	58552658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58719.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.04776683215473	3.90598960564976	3.84939174548701	4.0371548458556	4.14590321073671	3.86711484065763	0.265509503936111	0.600551891202012	0.881706603672466
Merged-chr7-130857279-2	chr7	130856779	130857779	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8445.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	5.02454230535793	5.04888816061634	5.04060940135698	4.97506521482827	4.78073017971215	5.29406204640916	-0.0408706048911866	0.916566204008554	0.981312252061916
Merged-chr4-88641147-4	chr4	88640651	88641651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3308.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	5.08505406811047	5.67727388019952	5.24122541074178	5.45350028938137	5.52552843716337	5.33868892426724	0.148293213816993	0.692710668192895	0.91870248759071
Merged-chr10-78015631-4	chr10	78015143	78016143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5836.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	3.99586219115494	4.14939873327005	4.24800500403871	4.33421684748321	4.06856385221865	4.40011263993063	0.378534390047398	0.430440639812135	0.79626959019857
Merged-chr11-6389759-4	chr11	6389278	6390278	+	831.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5347.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	5.29678513760645	5.1048440136919	5.49270949483261	5.44030124364639	5.0896060389462	5.09229127106265	-0.161284046517747	0.666246299577309	0.908059329979176
Merged-chr4-3954143-3	chr4	3953630	3954630	+	937.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14706.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	4.39932655489671	4.53111683009831	4.29724835674347	4.560478755988	4.71126595200093	4.36669654958814	0.360972461700332	0.415446151763094	0.78643843979409
Merged-chr4-41469314-4	chr4	41468810	41469810	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	4162.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	4.25410742770462	4.33094839527976	4.39132000975418	3.95562369629569	4.01183826248438	4.05504439682268	-0.89778761030219	0.0574006505539447	0.309178750083676
Merged-chr12-119377062-4	chr12	119376513	119377513	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66397.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	6.03970789567742	5.96523680607126	5.80493089084807	6.14529818913035	5.97106062490034	5.91740710036105	0.121075165795273	0.685764678443882	0.916482346315647
Merged-chr14-74734634-2	chr14	74734134	74735134	+	903.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285423, intron 1 of 8)	intron (NM_001285423, intron 1 of 8)	2337.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	3.60416199013855	3.484616442709	3.96629855163328	3.85984297899998	4.0794951584033	4.16774868057804	1.10810364163765	0.045589768414338	0.269668973499697
Merged-chr9-108507963-4	chr9	108507480	108508480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133794)	promoter-TSS (NM_133794)	-25.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	7.04717393872706	7.1063097881972	7.2828100004743	6.89759071441534	7.10342493437434	7.15608084144257	-0.133024661489099	0.59019305340217	0.87713052060241
Merged-chr10-7052891-4	chr10	7052387	7053387	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29702.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	5.90113942939626	5.95894254253593	5.80646493001492	4.9942466537462	4.79857452214168	5.10707775929493	-1.84776461214571	8.46393277461041e-08	6.16156533954316e-06
Merged-chr11-48870420-2	chr11	48869920	48870920	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1000.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	5.83082218900765	6.25993002977376	5.71259511647908	6.16193846769107	6.21813137066021	5.88397090176223	0.231499696448922	0.484356221640863	0.826798902252394
Merged-chr9-108692679-6	chr9	108692288	108693288	+	962.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 1 of 10)	CpG	645.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	7.132165511439	7.19333046610482	7.33967319624269	7.22972594320055	7.36880670315361	7.30911847946447	0.128631141635042	0.582431158640218	0.87374470272009
Merged-chr7-35742339-4	chr7	35741811	35742811	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12143.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	5.92341001681662	5.82217186824076	5.84515759590003	4.16626066773611	3.69587443635129	4.25227542109239	-4.97278464165535	3.1942797961807e-18	1.61084626230669e-15
Merged-chr11-4382478-2	chr11	4381978	4382978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029458, intron 10 of 10)	intron (NM_029458, intron 10 of 10)	58604.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	3.01385515333877	3.02568144101	2.930882280779	2.5876791553672	2.46020539126894	2.75863887223882	-2.31938375240781	0.00483324579409359	0.0597970590254548
Merged-chr2-131426656-4	chr2	131426164	131427164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65198.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	5.60785056378609	5.43339567433137	5.56872804013757	5.23662716505616	5.55145683252303	5.26950575183715	-0.316096478452519	0.360396873710364	0.746617778356579
Merged-chr13-60737306-2	chr13	60736809	60737809	+	894.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49055.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	6.2029905472937	6.04715283432426	6.54306568700555	5.94456500988093	5.9363110753077	5.89668985489102	-0.584967984399863	0.0574768624661773	0.309429009581113
Merged-chr11-29718704-4	chr11	29718175	29719175	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024226, exon 1 of 7)	5' UTR (NM_024226, exon 1 of 7)	112.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	5.83914235028527	6.41177881723867	5.85131975465314	6.84111980296682	7.32564637497301	6.41088416480465	1.36207135115778	0.000187183246438585	0.00473840692718641
Merged-chr3-60516434-4	chr3	60515938	60516938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	15259.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.24358388478853	6.17824329829468	5.71496227454063	5.91128193564727	6.03668253404703	6.00921397923041	-0.159722219386834	0.613372668184985	0.887185353929309
Merged-chr17-8827953-2	chr17	8827453	8828453	+	753.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-22032.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	2.31650807239582	2.58432033896736	2.48462501525819	2.03016531987619	1.96305464624332	2.23484872637985	-3.75969848067832	0.00200857667797151	1
Merged-chr14-73244310-2	chr14	73243810	73244810	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	Tigger5|DNA|TcMar-Tigger	6419.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	5.13826123092625	5.38239632814413	5.56593023853202	5.56528512949212	5.75586193506309	5.85290720941171	0.687076373707975	0.0449861950564101	0.267525108508703
Merged-chr6-100834597-2	chr6	100834097	100835097	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182939, intron 1 of 8)	PB1D9|SINE|Alu	959.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	5.76077635753331	5.93910475003488	5.91078202194663	5.78033666408208	5.64812652673534	5.69668161229527	-0.295609025563222	0.335320035651272	0.725448354793538
Merged-chr19-12800754-2	chr19	12800225	12801225	+	730.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 1 of 8)	B1_Mur1|SINE|Alu	2146.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	7.21530048203685	7.45373406691882	7.29791458311622	7.58065547787568	7.79666387531756	7.22283199894728	0.348909631589573	0.182629830278967	0.565440922476101
Merged-chr2-3579626-2	chr2	3579126	3580126	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66561.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	3.79290097463704	3.6758600006402	3.69378930887733	3.75763453685733	3.79635193997361	3.86581457598097	0.26896657725484	0.609100356875507	0.885053989692691
Merged-chr17-51219059-2	chr17	51218559	51219559	+	713.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-39707.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	3.90377171890324	3.70887222348327	4.07924923309757	3.81046436504896	3.8036574644087	4.05722481983673	-0.0291773622805703	0.955919095052963	0.989787698735885
Merged-chr5-122779740-4	chr5	122779235	122780235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145358)	promoter-TSS (NM_145358)	-325.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	7.69525325464272	7.12218396367854	7.276224691414	7.21024596566669	6.80023153396961	7.11692065266351	-0.511552548284528	0.0722650340502005	0.353157446871531
Merged-chr15-41765893-4	chr15	41765345	41766345	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	L1MA4|LINE|L1	-23150.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.14414586095015	4.19110718376516	4.17044925979848	3.97128403479232	3.82592243560542	3.84658664802045	-0.856736393564718	0.0820038170838265	0.378760677874606
Merged-chr2-91962085-2	chr2	91961585	91962585	+	929.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	1478.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	4.37150754095924	4.41569860791194	4.37914552817366	4.36978051621063	4.42983781964092	4.40280280014018	0.0323808354474904	0.940480448755859	0.98684811092327
Merged-chr16-16302897-4	chr16	16302414	16303414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-51.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	7.47678553101777	7.74058408263552	7.7008539668547	7.42737988626452	7.47612369046678	7.49609487137866	-0.258373280973069	0.257994632405841	0.655447526051088
Merged-chr15-6386705-4	chr15	6386203	6387203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023118)	promoter-TSS (NM_023118)	-45.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.88166328846689	5.99116103240527	5.97342911391603	5.71637535923832	5.64540176666554	6.03401606383204	-0.271167786833064	0.385320500147607	0.766341662207074
Merged-chr3-88621808-4	chr3	88621311	88622311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	417.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	7.05887491398175	7.00008654705974	7.27592934914011	7.24915851017457	7.23156906217587	7.59189257639691	0.374616679572509	0.140594688994903	0.500989374411712
Merged-chr19-6291324-4	chr19	6290854	6291854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	14458.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	7.41070017198497	7.21081295114015	7.16921828226212	7.07369170780953	7.19792052487613	6.901142597142	-0.299517007259095	0.22798781841893	0.622996177254149
Merged-chr5-20969177-4	chr5	20968681	20969681	+	960.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17359.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	3.46576575322215	3.40694080020096	3.61158949722377	3.61636830047577	3.59278003938069	3.40747254179749	0.200530789713217	0.728282011650357	0.930472609292658
Merged-chr5-5358119-4	chr5	5357585	5358585	+	936.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	22166.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.64660179621177	4.73121031590672	4.98092920560544	4.85651509243077	4.85826851197003	4.79402474405698	0.126539335137341	0.75001031406946	0.937476275940627
Merged-chr1-154058035-4	chr1	154057514	154058514	+	766.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143173.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.18106905110487	2.77703936517857	3.08231090904876	3.24826652006472	2.8203065128672	2.77610216832089	-0.25785091044453	0.735111052152187	0.932617455907478
Merged-chr11-8595781-2	chr11	8595281	8596281	+	648.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	68754.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.81139237893949	3.7776821369952	3.66314532465109	3.52512815505407	3.40222274025491	3.73327858809501	-0.713312921497659	0.205833505798928	0.596447652812717
Merged-chr5-26904422-6	chr5	26903927	26904927	+	748.305542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198886)	promoter-TSS (NM_001198886)	-351.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	3.44131272482429	3.38000789853458	3.16898278083667	3.9116084327168	3.20044591753411	3.80625742367917	1.20197605091797	0.0758887453055243	0.362611383334201
Merged-chr7-122464103-4	chr7	122463605	122464605	+	945.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 5 of 16)	Lx8b|LINE|L1	174980.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.27952287511982	3.94151388273966	4.14092171997406	4.06046837738887	3.85254479242399	4.37993447466432	-0.0652759624833786	0.899609729000479	0.976656120908248
Merged-chr11-77446819-4	chr11	77446349	77447349	+	945.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17064.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.14913033105201	4.34822356195163	4.08824477608607	4.34117491499012	4.03393721032869	4.0580295011717	-0.149773170940938	0.758251069618027	0.940104678746179
Merged-chr11-36942156-4	chr11	36941653	36942653	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	2088.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.57623803523853	4.37955850695611	4.7985368242234	5.01042529702932	5.3334291059763	4.70509977375226	1.05687608728067	0.0152690546389881	0.134288922777817
Merged-chr11-85686391-4	chr11	85685917	85686917	+	813.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	ORR1E|LTR|ERVL-MaLR	33327.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.51932027337572	5.07006252424359	4.8415743973433	4.76452821381122	4.54913948713123	4.40782901870105	-0.574522280757246	0.197899010453475	0.586043439320662
Merged-chr2-91204092-2	chr2	91203592	91204592	+	791.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 2 of 10)	B1_Mur3|SINE|Alu	1180.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	6.62539319438828	7.04013692307589	7.12371452297558	7.12363997613824	7.11872227491495	7.16933528682015	0.294556279828966	0.266630986214013	0.664166899200562
Merged-chr12-80115473-8	chr12	80115028	80116028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2515.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	8.82482268062513	8.97093820758436	8.44148621127628	8.83029446422778	8.98416569317665	8.75299134131802	0.124739770064863	0.592964451036638	0.878372430224994
Merged-chr7-30594731-4	chr7	30594220	30595220	+	870.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1778.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	2.90589003779384	3.07274579235295	3.08573450480173	2.99134746957381	2.95520895995505	3.32134249797565	0.312400414017569	0.647057988071076	0.901159400806897
Merged-chr12-84173618-2	chr12	84173118	84174118	+	997.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163502, exon 2 of 13)	exon (NM_001163502, exon 2 of 13)	20397.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.32698939441573	6.223527538422	6.19564369645366	5.94546819763554	6.03284943300674	6.06224361818511	-0.408184812063049	0.148274749485099	0.513762236213799
Merged-chr6-85381427-2	chr6	85380927	85381927	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6793.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	2.57600381214387	2.43239832438123	2.81482766491076	2.41388772964314	2.51541438466451	2.77170699046947	-0.23045382513164	0.777407199197099	1
Merged-chr6-146577681-5	chr6	146577177	146578177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347513)	promoter-TSS (NM_001347513)	158.0	NM_001362108	71177.0	Mm.271774	NM_138757	ENSMUSG00000040250	Ints13	4933424B01Rik|Asun|Spata30	integrator complex subunit 13	protein-coding	8.06555921999551	8.43890127085972	8.00496849514577	8.02007665474721	8.44992856731689	8.00777145949434	-0.00884975758106903	0.972568424675937	0.993868590220018
Merged-chr11-78600720-4	chr11	78600207	78601207	+	866.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49972.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	4.87487097990098	4.9378178830575	5.01215996470758	4.52175622772992	4.93322283918014	4.90230544440583	-0.306221680543724	0.448996929620202	0.807507381659054
Merged-chr10-25410962-4	chr10	25410454	25411454	+	798.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	2586.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.27423150814928	5.39588185511662	5.28694465984883	5.1606821924257	5.16635612156829	5.46776196055479	-0.121971473728588	0.729285390519145	0.930601789377265
Merged-chr11-29806904-2	chr11	29806404	29807404	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	18764.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	4.86677398171081	4.7957032099816	4.94867250724198	4.64350803452258	4.56869256264323	4.7207115664084	-0.528439518936067	0.183201111618506	0.566220863812224
Merged-chr10-67004283-4	chr10	67003785	67004785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-790.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	8.00648576057381	8.05330365042854	7.46774496882533	7.82076031912626	8.04791681332971	7.19443440638572	-0.183584867559107	0.555606219046556	0.863289501518253
Merged-chr10-111160356-4	chr10	111159843	111160843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4459.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	7.08204378355148	6.93542210976304	6.90335483802412	6.23848986828166	6.15601192912223	6.10848251861153	-1.29265676741545	9.11351692889958e-07	4.99539674358908e-05
Merged-chr17-84791496-2	chr17	84790996	84791996	+	893.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	-710.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	7.39746285976558	7.90171004973132	7.20923168674519	7.2683169794199	7.56274415732549	7.33862493255546	-0.215113165776302	0.447847943284731	0.806783685830736
Merged-chr2-155563112-4	chr2	155562606	155563606	+	991.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008180)	TTS (NM_008180)	-6176.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	4.56235361761118	4.39554576580517	4.54663059662729	4.62620561982585	4.81925646964657	4.57173903874923	0.447136352226351	0.28799012954814	0.685344850548881
Merged-chr7-4082976-4	chr7	4082480	4083480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-19776.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	5.83134909571476	5.95219901437342	5.95696886004198	5.98834362291221	6.07135728109693	6.10693607163322	0.248028578648089	0.393775191574164	0.771940960060713
Merged-chr5-129908588-4	chr5	129908103	129909103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026916)	promoter-TSS (NM_026916)	63.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	6.97105136700319	6.89687596926178	6.88415370365929	6.58536245429423	6.428860431693	6.61951113952965	-0.595668530941734	0.0186106846765699	0.154170249440607
Merged-chr8-70613969-4	chr8	70613443	70614443	+	764.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2901.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	6.39222194617875	6.36208059728941	6.70610665103523	6.6774048529579	6.85179621607311	6.86716951516293	0.501414460354128	0.0629995125895175	0.326587966079906
Merged-chr15-79753202-4	chr15	79752692	79753692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	10494.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	4.62124184327486	4.94968612014353	5.01242562434711	4.7254735921532	4.42031569592879	5.10762698054969	-0.223452981011179	0.619125891255429	0.889657217918386
Merged-chr15-93275354-4	chr15	93274831	93275831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346785)	promoter-TSS (NM_001346785)	-152.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	7.36623829104749	7.24730660726135	6.97568334743464	7.15696000410667	7.11688766579827	7.33190100925555	-0.0227372222690952	0.92786058809323	0.983740101474131
Merged-chr19-46303871-2	chr19	46303370	46304370	+	692.75	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-867.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	6.47686882131321	6.14634556278959	6.2963001451496	6.07183261665162	6.22488451071011	5.88475924362221	-0.394085103194854	0.190008084338187	0.576194201013588
Merged-chr9-83533201-3	chr9	83532693	83533693	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15145.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.39532315776539	3.22856571364356	3.34149896641017	3.3101907175713	3.13741635965538	3.41242410641362	-0.154113192971523	0.803601770206743	0.95351077179348
Merged-chr11-32586144-3	chr11	32585651	32586651	+	952.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52885.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.18939300729409	3.98057919616544	4.22017452877609	4.14899457503328	3.93027943126015	4.10585836752079	-0.20221315750667	0.678726589324018	0.913547105216319
Merged-chr8-8653668-3	chr8	8653187	8654187	+	894.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	7086.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.13348865915986	3.02338297178694	2.91095932320457	2.94163101796669	2.8302307177025	3.10377095387491	-0.338189244447859	0.624986626923079	0.892311037285785
Merged-chr11-115000277-4	chr11	114999742	115000742	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134158, intron 2 of 3)	intron (NM_134158, intron 2 of 3)	1638.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	6.86233151564087	6.4427681889547	6.5084558261739	6.91963295687797	7.08846423961444	6.06527679513565	0.241641655705682	0.49832151691928	0.833856267944725
Merged-chr16-31080344-1	chr16	31079844	31080844	+	551.0	f1_balb.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	1088.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.35205607726584	3.32274193050562	3.35840527561921	3.25481130649967	3.66504140154664	3.42997149111329	0.473633186121649	0.439609547477112	0.801216871474848
Merged-chr12-80235474-3	chr12	80234978	80235978	+	850.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	24893.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	4.10013193100616	3.9994033109606	3.93914173573558	3.92696945103207	3.8270872192596	3.95877811043259	-0.359039502081198	0.471976941684974	0.820417342888691
Merged-chr4-117836579-5	chr4	117836085	117837085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008135, intron 1 of 13)	CpG	1327.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	3.2730126013503	3.35588218162288	3.44902759228812	3.40038709155405	3.23468584430911	3.51914755106345	0.0972442239077189	0.872319001126889	0.970261003150518
Merged-chr7-66391998-1	chr7	66391498	66392498	+	781.0	f1_c57bl6.idr	3' UTR (NM_053080, exon 13 of 13)	3' UTR (NM_053080, exon 13 of 13)	-3657.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	5.39687642733356	5.45825247895188	5.37981444724736	5.69081960695709	5.81123862303172	5.41225488213665	0.46701981771255	0.163407568146807	0.537242865848567
Merged-chr10-68724568-4	chr10	68724103	68725103	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	857.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.72394938293384	8.01690451659609	7.67990683248678	8.22298539704825	8.46125346780249	7.95976350577861	0.590888748795503	0.0178677826587665	0.149994194861849
Merged-chr7-67271616-2	chr7	67271116	67272116	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357325, intron 4 of 11)	intron (NM_001357325, intron 4 of 11)	49000.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.05161321951114	3.08577803602745	3.37166861684524	3.0030454706521	2.69070614335142	3.23163761293829	-0.82086864592095	0.267524665004565	0.664781016147523
Merged-chr1-66862882-4	chr1	66862393	66863393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	CpG	416.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	7.80632813170874	7.85342349787182	7.34809763472143	7.46427038362387	7.2642948164257	7.31272858956431	-0.508963674472128	0.0455317371793596	0.269402317231042
Merged-chr5-32683936-2	chr5	32683436	32684436	+	815.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205132, intron 11 of 11)	ORR1C2|LTR|ERVL-MaLR	62406.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.85153020120634	3.8672799046458	3.80052829809511	4.30933732865887	4.47148090436646	4.63702462143267	1.79719393658975	0.000272614734353932	0.00643592149273011
Merged-chr7-25129707-4	chr7	25129224	25130224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2736.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	7.47404490663297	7.33901379739781	7.23423736364765	7.68410428625446	7.7989653892965	7.57471011772879	0.49089795091449	0.0338598983309387	0.225069054187629
Merged-chr16-13372150-4	chr16	13371675	13372675	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	13754.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	3.97244540794106	4.05239439724892	3.98758226061032	3.81162835477597	3.84367658540094	3.69384112002253	-0.671582824401707	0.191265576439848	0.577843643976488
Merged-chr3-127894143-4	chr3	127893653	127894653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	2170.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	5.08700265806437	5.14939280157594	5.44895063070748	5.4015250782053	5.49460343878359	5.33407033168304	0.381047138693923	0.279585973073037	0.677290671437563
Merged-chr9-45417451-4	chr9	45416944	45417944	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040732, intron 4 of 4)	intron (NR_040732, intron 4 of 4)	11367.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.82654101782821	3.626665993258	3.61317782322055	4.07424646197432	4.0177958308552	4.18626401856163	1.22700394179481	0.0197702192777266	0.160226006200553
Merged-chr14-58315304-2	chr14	58314804	58315804	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	242618.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.91537330257536	3.81899689551751	3.90533121829738	4.25106167873354	3.81587053320483	3.76391424280972	0.261625568047382	0.624633972960168	0.892121293039105
Merged-chr2-181592674-7	chr2	181592148	181593148	+	918.514282	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164597)	promoter-TSS (NM_001164597)	-187.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	6.29365290208317	6.05850166841882	5.95429164927758	6.46049628479691	5.8593800956508	5.86405278153354	-0.0303369100100891	0.928535256055669	0.983810947287576
Merged-chr10-117840739-4	chr10	117840250	117841250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5224.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.06570507496838	6.7628017090064	6.69183148491941	7.09000655549993	7.25001238504826	6.75096681426473	0.307036516433088	0.272940641303777	0.670114333646239
Merged-chr13-58129997-1	chr13	58129497	58130497	+	949.0	f1_balb.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1441.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	6.13779458865333	6.58454265158493	6.57472530637161	6.47974319497188	6.23335916597865	6.34951135338894	-0.147021043794461	0.620146216373024	0.890026802452616
Merged-chr12-98261276-3	chr12	98260763	98261763	+	827.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1804.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	3.90675021499192	3.48129348083435	3.79703756008375	3.62645428986497	3.30379284817403	3.66457760788547	-0.708712279441959	0.236720145891486	0.633100086761981
Merged-chr4-117253388-3	chr4	117252886	117253886	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1046.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	5.17768460666949	5.01547894864332	5.08850088103218	4.46422940010445	4.93196807076199	4.62474210914338	-0.867027264280384	0.0377362268196419	0.240186335287139
Merged-chr6-124790274-3	chr6	124789776	124790776	+	794.383362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-10549.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	2.67629910853532	2.72742557964579	2.80474851790858	2.62272419246394	2.45970361512145	2.99180516860821	-0.158104547333059	0.841932132828836	0.963002495523594
Merged-chr10-117805781-2	chr10	117805295	117806295	+	877.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13090.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.27306679620861	2.23891226678229	2.51649561408578	2.23065870077848	2.09988535189287	2.46823854553197	-0.492418079800604	0.579973939964485	1
Merged-chr12-85914554-3	chr12	85914064	85915064	+	934.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 19 of 32)	intron (NM_001347395, intron 19 of 32)	89614.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	4.19024928919579	4.19631017003089	3.84042527565939	4.01341530475953	3.91562595046199	4.06380349646307	-0.298880938467874	0.554067404254809	0.862589866096024
Merged-chr6-129171841-4	chr6	129171356	129172356	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8759.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	2.9928866205267	3.14956096699607	3.14064664335293	3.64309520132831	3.18996029325723	3.55126889132835	1.53543881783133	0.0203574842205015	0.163346725845659
Merged-chr1-162547211-4	chr1	162546728	162547728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	1117.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	6.34976020082617	6.73768621180449	6.85967797578734	6.58346308350791	6.89595588745204	6.57620954391142	0.0646026742726413	0.82512461343838	0.958708755759778
Merged-chr12-110978672-1	chr12	110978172	110979172	+	1000.0	f0_c57.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-54.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	6.29937085153511	6.38041688161074	5.95411779373644	6.49257441102229	6.13011001298829	5.55327985494567	-0.17602834941582	0.632226477493578	0.895435008062156
Merged-chr13-41604362-4	chr13	41603841	41604841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1875.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	7.83391848509461	8.08251411460715	7.84007708159161	8.04575226003956	8.39086969967748	7.88802322242706	0.293047399846089	0.23435195932723	0.630452522567377
Merged-chr1-172463528-4	chr1	172463027	172464027	+	961.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11833.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.17555273100293	3.87182271733924	3.99487292723894	4.21659462949055	4.27352226216126	4.11416539923247	0.529016952547702	0.278361134259859	0.675623815920472
Merged-chr3-103809474-4	chr3	103808965	103809965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163552)	promoter-TSS (NM_001163552)	-52.0	NM_001163552	67489.0	Mm.197568	NM_026193	ENSMUSG00000032952	Ap4b1	1810038H16Rik|AV004952|Ap4b4	adaptor-related protein complex AP-4, beta 1	protein-coding	7.65128721527388	7.8901811673587	7.5292354437608	7.75984299867987	7.82965316123247	7.71927181761034	0.09614705992887	0.677263456697694	0.912758952136406
Merged-chr9-56419074-4	chr9	56418595	56419595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	476.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	8.19422962846564	8.42853356537939	7.85440662248554	8.24506741479329	8.60879279157977	7.65777881936177	0.0744352172131439	0.809298060030193	0.954721853010197
Merged-chr7-143036633-4	chr7	143036132	143037132	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 4 of 4)	Lx3_Mus|LINE|L1	-16118.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	5.46806342338151	5.11618282836588	5.3368669451498	5.75948018947547	5.61287463649872	5.73868189376737	0.737847916543123	0.0294931019604089	0.206557002204535
Merged-chr10-78169844-4	chr10	78169330	78170330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138601)	promoter-TSS (NM_138601)	-62.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	5.88325487775443	5.89099503026794	6.08108507923472	5.91265322332864	6.0018712319741	5.49513075965317	-0.197726408473874	0.544894136275076	0.857896259450602
Merged-chr2-3657018-4	chr2	3656522	3657522	+	898.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-56436.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.66919528122106	5.51711830602626	5.63516827916723	5.72322026296107	5.90149321322578	5.96708675546997	0.473736714717789	0.12986492198333	0.482060341820603
Merged-chr14-120832013-4	chr14	120831504	120832504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79190.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	5.45573887809699	5.49788918836584	5.21368601407805	5.62714490081156	5.37335993616384	5.20908857339102	0.0324274145349435	0.927332877998141	0.983584626679457
Merged-chr1-172148072-4	chr1	172147596	172148596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	81.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	8.24280215027295	8.61185302191799	8.17055454353567	8.16496336688882	8.38577118350792	8.1789332364694	-0.156129846463341	0.508366416917927	0.839818423824339
Merged-chr13-113435341-4	chr13	113434883	113435883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	67461.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.7963955734248	6.61526980278677	6.89695383512111	6.41729928179892	6.28596909605361	6.33684531485772	-0.677948382367681	0.0112489955042677	0.109282710790322
Merged-chr3-15276094-4	chr3	15275589	15276589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	56213.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.96701021308807	5.33145338010352	4.92276698757999	4.83903255688111	5.04104782829189	4.95117534463847	-0.31294424995305	0.424612038283975	0.792710757943302
Merged-chr10-127600401-4	chr10	127599895	127600895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20753.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.18069126425599	7.89869170549598	7.96144711796414	8.01083688632698	8.2373072011427	8.1462617254524	0.162952568422499	0.465006418826517	0.81670580246785
Merged-chr13-9027456-4	chr13	9026957	9027957	+	885.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31445.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	3.54025419463774	3.78878589757206	3.3846443039113	3.5166954156468	3.53970996412799	3.73116332460008	0.0159944856231361	0.978294897908268	0.995097513112614
Merged-chr1-163994809-4	chr1	163994303	163995303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201364)	promoter-TSS (NM_201364)	-7.0	NM_201364	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	5.65060907310834	5.80175166200484	5.80524189117697	5.49140551406305	5.73100953125663	5.51712727517083	-0.291710647039433	0.364715772595934	0.750028369485675
Merged-chr5-122158906-3	chr5	122158438	122159438	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013636, intron 1 of 6)	intron (NM_013636, intron 1 of 6)	659.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	5.73767255516863	5.82969073421148	5.93960984344444	5.85322905673598	5.49021292201046	5.40921638495472	-0.42120232287565	0.205485327379747	0.596080597722807
Merged-chr19-5704280-2	chr19	5703780	5704780	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010609)	promoter-TSS (NM_010609)	-191.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	2.77881514306508	3.07152072416053	3.08531375588876	2.93558390957383	2.87630019707376	3.15666143143214	0.0249281983370816	0.971752588968661	0.993783614343214
Merged-chr13-40843595-3	chr13	40843059	40844059	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16209.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	2.72227231939963	2.49057399012743	2.77275491622103	2.6344385866191	2.50856848757717	2.53356272546579	-0.596564319478393	0.446030708269363	1
Merged-chr4-56947469-4	chr4	56946950	56947950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175518)	promoter-TSS (NM_175518)	-21.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	5.5433075218084	5.68524879465909	5.85918684399494	5.73684167253625	5.13603023288485	5.56659681701326	-0.373669382003953	0.303368360915947	0.699902971652469
Merged-chr17-24850414-4	chr17	24849889	24850889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024284)	promoter-TSS (NM_024284)	-87.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	7.95064495071074	8.11091507782114	7.82614208726411	7.78600351245148	7.79664394960227	7.72706177763419	-0.287380612982522	0.19155126037906	0.578163985386394
Merged-chr6-97460677-3	chr6	97460180	97461180	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	Kanga2_a|DNA|TcMar-Tc2	-1394.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.34334481626478	7.51821034120872	7.83773219701455	7.36884069428532	7.64130115296909	7.64522428691576	-0.0263744496265788	0.918102508354839	0.981747877135909
Merged-chr6-125361557-2	chr6	125361057	125362057	+	723.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_011609, exon 9 of 10)	exon (NM_011609, exon 9 of 10)	11834.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	3.84917423497841	3.7024796347023	4.10263700329496	4.28989965376552	3.78242608617576	3.82906104240329	0.305287733106152	0.58058129714916	0.872888274963799
Merged-chr1-135411164-4	chr1	135410675	135411675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 5 of 24)	intron (NM_001357578, intron 5 of 24)	19316.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	4.99095686393719	4.69482693430362	4.49554817931845	4.53042098548415	4.75654015898843	4.81038289915861	-0.115291633285891	0.78896044174965	0.949092571737679
Merged-chr1-95598304-4	chr1	95597798	95598798	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	69296.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.8560157303753	4.89108598985953	4.85251154504892	4.73958546265783	4.86704589917254	4.76487357246156	-0.160855246402379	0.677210356938613	0.912702171725297
Merged-chr5-30233166-2	chr5	30232666	30233666	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027652, intron 1 of 9)	intron (NM_027652, intron 1 of 9)	585.0	NR_137634	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	4.0921545538898	4.32682639948697	4.64509711494439	4.35264115713403	4.201173610139	4.02073590186181	-0.434113549645729	0.382686352259146	0.764125175224222
Merged-chr8-80740738-2	chr8	80740238	80741238	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1279.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	5.91121451210485	5.96045656760101	6.14059390765033	5.82194789651041	5.82027791990794	5.86666597596418	-0.291897598312157	0.327451088190796	0.7196658781347
Merged-chr7-122297847-4	chr7	122297346	122298346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	8721.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.51078127628865	5.33362550473852	5.50950281691145	5.4839767746571	5.518210503981	5.57194540698003	0.139969765478772	0.669422805505866	0.909647137220042
Merged-chr19-11533592-4	chr19	11533079	11534079	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3270.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	4.66109280513235	4.53094912096055	4.53582887462833	4.34349855368685	4.24457409003883	4.71793452114273	-0.353389005958091	0.430824275392644	0.796606987332891
Merged-chr4-132500564-2	chr4	132500064	132501064	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_144907, intron 2 of 9)	B1_Mur3|SINE|Alu	9892.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	3.22406023859247	3.40267425840906	3.55161763725813	3.48700427953418	3.5000763727626	3.46199064866532	0.34221112133863	0.564549876792891	0.86648819110595
Merged-chr6-29803273-2	chr6	29802773	29803773	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	34830.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	2.48438965311433	2.55326443504756	2.45231884921886	2.68026932699835	2.53390805332817	2.95660517081546	1.29415242680407	0.108213377540419	1
Merged-chr11-121702378-4	chr11	121701885	121702885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-42.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.77083860312793	7.86838421745929	7.67972295350561	7.8222881791585	7.76158740126565	7.62418845831029	-0.0532551473249038	0.809595744939436	0.954749848816598
Merged-chr13-67797741-2	chr13	67797245	67798245	+	765.833374	f0_c57.idr|f1_c57bl6.idr	intron (NR_045194, intron 2 of 2)	intron (NR_045194, intron 2 of 2)	-16071.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	2.96104678596354	3.11770834316795	3.10518045433381	3.37400344457319	3.22936799378433	3.61090858600409	1.44153147450523	0.0283362184059846	0.201502136757209
Merged-chr10-8861619-1	chr10	8861119	8862119	+	614.0	f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	24451.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.52239882455741	5.06134593509507	5.45452897772115	5.4878832563256	5.60631553405529	5.16375530378795	0.166290365201111	0.657524745937001	0.904798742244684
Merged-chr12-85992204-4	chr12	85991704	85992704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86837.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	7.7314285979447	7.88323975410384	7.29923341996676	7.42495859433819	7.8134848124645	7.24582990637131	-0.205706624058112	0.471180356081227	0.819888573544447
Merged-chr13-108046349-2	chr13	108045849	108046849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048250, intron 1 of 2)	RMER6A|LTR|ERVK	1875.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	2.91071489945845	2.7718982455396	2.79366989670587	2.93555981357511	3.04621331494097	3.10816748687862	0.975687236473805	0.162201318837433	0.535591771804088
Merged-chr7-101571121-4	chr7	101570644	101571644	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	10017.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	3.93474545973098	3.75332041569314	4.19997757540081	4.54124330228607	4.30028778907915	4.44040776700694	1.30281402823236	0.00837997297647727	0.0889729222185429
Merged-chr13-98869118-2	chr13	98868618	98869618	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	21924.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.25696331746862	5.03115570994975	5.30804906330111	4.69849590469605	4.30397069543946	4.55875647941541	-1.54124580300619	0.000210761375133639	0.00522401921421502
Merged-chr17-73034199-1	chr17	73033699	73034699	+	706.0	f0_c57.idr	Intergenic	Intergenic	-73786.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.29928581565454	6.0370690868377	5.93931204114582	5.83322391784616	5.61724426262235	5.95332752769062	-0.543445633441238	0.0842356736863946	0.38399616151304
Merged-chr2-45200786-3	chr2	45200284	45201284	+	855.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83342.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.3980295081533	4.99942568722699	5.19496978359832	5.18376788115226	5.07550404322741	4.90144291805944	-0.299140191166541	0.43102811084582	0.796627952450168
Merged-chr4-155178469-4	chr4	155177957	155178957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	44078.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.61983708859371	5.29204880553107	4.98699682114586	5.09439644909889	4.96290038182527	4.76808859569077	-0.788321930838813	0.0501955359243488	0.285159854855906
Merged-chr1-38989317-3	chr1	38988816	38989816	+	633.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026850, intron 1 of 5)	MTC|LTR|ERVL-MaLR	1502.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	2.95150864866646	2.87347269551066	3.08288380550324	3.06213023004786	2.82017831468016	3.0976544379819	0.120621557083248	0.861266012332939	0.967789299492425
Merged-chr2-158136455-4	chr2	158135968	158136968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	9924.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.19961966843038	6.94088399024276	6.8002510321451	7.10700986579985	7.01698907398594	6.97705750303419	0.0562787210317936	0.826089855260298	0.959066912370399
Merged-chr17-30612687-4	chr17	30612195	30613195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025374)	promoter-TSS (NM_025374)	-36.0	NM_001113560	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	6.07442883148766	6.28550031987694	6.068638299337	6.22337374092236	5.9960113807556	6.12935260446942	-0.0624970224257537	0.830153289273452	0.960219727001139
Merged-chr8-70816900-4	chr8	70816371	70817371	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008353, intron 11 of 15)	CpG	8422.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	3.99572611571335	3.65992643020678	3.52388672044898	3.35641678803367	3.21649769473377	3.482952109565	-1.47746575208447	0.016281827536516	0.140580235548018
Merged-chr9-49484318-1	chr9	49483818	49484818	+	744.0	f0_balb.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	1907.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	4.62466380951802	4.78772413849403	4.71099758611315	3.64497181342477	3.50195191460605	3.89650151918543	-3.27731206036811	5.51377315753484e-09	5.32857185705178e-07
Merged-chr11-32532134-2	chr11	32531592	32532592	+	709.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1174.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.21087911845883	3.94176199132993	3.69502581375917	3.84537492736593	3.75029480357723	3.59284429840797	-0.743739930655935	0.184067191974031	0.567674681607678
Merged-chr11-29149549-2	chr11	29149049	29150049	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027869, intron 18 of 27)	PB1D10|SINE|Alu	18798.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	5.85216368926406	6.11439872399556	5.76427351554916	6.28119454968269	6.38787123720572	6.32912253621714	0.686442370894383	0.0204371569484117	0.163764922511888
Merged-chr11-103102911-4	chr11	103102419	103103419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025988, exon 2 of 11)	5' UTR (NM_025988, exon 2 of 11)	1231.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	5.43909960060355	5.39564898849157	5.24182828410127	5.41603848168127	5.39844377327215	5.43215393396255	0.0887875099730648	0.791198527700235	0.949694766870106
Merged-chr10-118082091-2	chr10	118081591	118082591	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-59696.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.01862710749262	7.69462917841908	7.39619207908162	7.68657141331637	7.95244970444207	7.5398342575626	0.0113806519490937	0.966526025685528	0.992321519467474
Merged-chr3-158036590-4	chr3	158036087	158037087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	52.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	8.74955645614238	9.13861400425458	8.16046489863789	8.60890636583863	9.10295851966505	8.66712706342075	0.0875982348796105	0.772294475624687	0.943716660313239
Merged-chr10-44270104-2	chr10	44269604	44270604	+	815.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	B3|SINE|B2	1765.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	3.9743469280914	3.8993639511135	4.12865428299787	3.999127920429	3.83101442917776	3.96420485705915	-0.209407332279197	0.676680448634102	0.912549881054299
Merged-chr6-145765159-4	chr6	145764648	145765648	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43235.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.17206266353169	3.86854344007557	3.93463302363875	3.55851202994795	3.8178877269969	3.95511226056152	-0.673980602825316	0.213961233653751	0.607081986287297
Merged-chr13-23772772-3	chr13	23772276	23773276	+	814.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9108.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	3.41934681674059	3.38284991558726	3.15815200284295	3.32281464254909	3.39493711729372	3.57056471102978	0.376013645606039	0.542537118228141	0.857262220537925
Merged-chr14-31160137-2	chr14	31159637	31160637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 13 of 68)	intron (NM_138672, intron 13 of 68)	8504.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	7.19133341075197	6.72913191089286	6.94746138877251	7.2360587509446	7.23930145466344	6.71111317537081	0.187207117825061	0.519262078827341	0.845725113262126
Merged-chr12-99562502-4	chr12	99561993	99562993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1348.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	7.38462376884239	8.01619669416216	7.13491691088115	7.49476538083861	8.00391154468827	7.59394206597654	0.207385426476926	0.513835545933138	0.842799686694354
Merged-chr1-36104854-2	chr1	36104354	36105354	+	996.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015818, exon 2 of 2)	3' UTR (NM_015818, exon 2 of 2)	36454.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	2.83085868276313	2.81336541782562	2.95590072895694	2.80875773747419	2.51172311236934	3.02799125239576	-0.353996363184837	0.647114888702629	0.901188901222921
Merged-chr13-69392375-4	chr13	69391843	69392843	+	940.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141521.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.49601430837242	4.40880616168056	4.30630518854276	5.05688492677211	5.27654541481215	4.86221893862773	1.55673755807773	0.000210969244951765	0.00522761433411153
Merged-chr6-121183885-4	chr6	121183364	121184364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130903, exon 1 of 7)	non-coding (NR_130903, exon 1 of 7)	197.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	4.97061586511348	5.22066688642182	5.05246612200231	5.20383847024884	5.02607456170433	4.81429960998502	-0.120622773847455	0.752856179964334	0.938425517908624
Merged-chr2-172370621-4	chr2	172370228	172371228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291185)	promoter-TSS (NM_001291185)	-158.0	NM_011497	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	6.62422951031746	6.63392829884492	6.80054289373725	6.99051863654286	6.62612112175501	6.4946648413348	0.0661894478825881	0.812571696379195	0.955654408687215
Merged-chr2-133494002-2	chr2	133493502	133494502	+	884.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-58157.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.19165239899576	3.29609284246156	3.09456036612042	3.3246516598591	2.90293492444208	3.50258663371021	0.264069924568583	0.704291672418646	0.9223772679418
Merged-chr9-115805488-4	chr9	115804979	115805979	+	911.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103976.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	2.99012199347816	3.31129485613554	3.08995763192903	3.35219356695519	3.23456326457803	3.28169485177141	0.611310188170648	0.348141774037428	0.736087868121677
Merged-chr2-9989836-4	chr2	9989335	9990335	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58774.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	4.65672826597535	4.62919073495974	4.43859324310476	4.74770232949006	4.84936051577179	4.41408512231639	0.263000397068853	0.544114377734357	0.857551302506722
Merged-chr4-12036769-4	chr4	12036296	12037296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51161.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	3.79476940558342	3.84792197267929	3.75445648556479	4.06184435449005	4.18325543278102	3.87978095938184	0.776155631497971	0.130055026687888	0.482195010397444
Merged-chr16-46010472-4	chr16	46009958	46010958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-45.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	6.47346140574376	6.89266415823339	6.35156971846871	6.32711470740598	6.13095818882719	5.96284924752495	-0.735357463438206	0.0177872283880616	0.14945367057597
Merged-chr14-77547069-4	chr14	77546553	77547553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-40185.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	5.38663907023373	5.29910713831123	5.5379497831484	5.22969927271452	5.39761572601452	5.46090792194129	-0.0775910474034351	0.820550472786991	0.957686781867223
Merged-chr7-25785027-4	chr7	25784528	25785528	+	953.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	3705.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	5.46386275214285	5.21183580688936	5.71678577935314	5.90946987033386	5.72759601460833	5.47425400654013	0.473450760191998	0.181067206057563	0.563309390781554
Merged-chr1-21070772-2	chr1	21070272	21071272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8453.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	5.51334212880306	5.74883962413997	5.81424587630598	4.83491188300092	4.59733263267769	4.86946804996173	-1.9354035379143	2.13346954442072e-07	1.38797289954776e-05
Merged-chr16-33754775-2	chr16	33754275	33755275	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-39262.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.85878212449535	4.03301283241563	4.09498683801213	3.94075081813421	3.8781467461003	4.07121729720073	-0.10792410812203	0.829371839283614	0.960024094417547
Merged-chr13-63850604-2	chr13	63850137	63851137	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361124, intron 8 of 9)	L1MC2|LINE|L1	35397.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	3.20823253621809	3.30504430637019	3.25916244979632	3.01186942358209	3.08832534463156	3.329992813032	-0.484475189431141	0.452186637807023	0.809286173636239
Merged-chr19-24432711-3	chr19	24432263	24433263	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	44711.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	3.11106539601255	2.92654838316245	3.2120475767972	3.73762325814804	3.39736789590122	3.34568323142518	1.7541636273074	0.00827520908437611	0.0881710990768805
Merged-chr18-54019671-3	chr18	54019174	54020174	+	713.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	157561.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.95153847740449	3.77039848552617	3.69749242189433	3.56983236916793	3.85178803178824	3.76777270865944	-0.250666486880351	0.64665765011214	0.901026195271032
Merged-chr11-69664811-4	chr11	69664353	69665353	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291058, exon 5 of 6)	exon (NM_001291058, exon 5 of 6)	1317.0	NM_001291058	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	8.17397664243133	8.50156694578292	8.12788197607936	8.29793656348962	8.52006373603215	8.09083834117723	0.053119119849638	0.826289829162448	0.959130347937145
Merged-chr11-96824265-4	chr11	96823744	96824744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130454)	promoter-TSS (NM_001130454)	-117.0	NM_001130451	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	3.51874186979769	3.48358014054765	3.36259229616025	3.57033014105644	3.72204789050849	3.65620287801599	0.68986396561491	0.226218607890874	0.621140322788657
Merged-chr8-108683906-4	chr8	108683406	108684406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30738.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.40518969682726	5.43032210264716	5.31428460101349	5.41262390275544	5.27739502066033	5.2142202970327	-0.16177654906462	0.634543476688146	0.896350313439852
Merged-chr7-141393032-4	chr7	141392522	141393522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	862.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	7.63826913148954	8.34511050787932	7.84101821367033	7.54275707722716	7.98569223729542	7.67031885186264	-0.329916195886557	0.248606565255343	0.64569263919114
Merged-chr2-22936484-2	chr2	22935984	22936984	+	651.625	f1_balb.idr|f1_c57bl6.idr	intron (NR_149721, intron 10 of 10)	RSINE1|SINE|B4	40962.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	2.67875843852675	2.56953455671783	2.86667378010831	2.52019032974973	2.67193025740573	2.99453749435606	0.168198002237671	0.830440865532291	0.960308134590845
Merged-chr19-32223117-2	chr19	32222617	32223617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-12104.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.21612300959634	5.51798736076288	4.97731048557792	4.40547499862438	4.20149179704276	4.46815445043864	-2.14396012357178	6.93687095404086e-07	3.91589659663387e-05
Merged-chr17-53587840-4	chr17	53587335	53588335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	L2a|LINE|L2	3709.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	5.57968319943116	5.63139851106511	5.3527640257258	5.54249600374963	5.55615260439475	5.53868135284799	0.0177961616413008	0.956690456666908	0.989887454023164
Merged-chr9-56076084-4	chr9	56075586	56076586	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13890.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.92307033262072	4.84987324523181	4.64099688118718	4.89953202062159	4.68340404895109	4.82852521688046	-0.0373026751010322	0.925737421287415	0.983283624589872
Merged-chr7-143296658-4	chr7	143296182	143297182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_001461)	promoter-TSS (NR_001461)	-135.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	6.93669145825413	7.22739893706073	6.83477024238613	6.77982343113966	6.90917251334503	6.70301208159273	-0.326282738513999	0.216659252366364	0.610159854833155
Merged-chr4-116650573-2	chr4	116650073	116651073	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 1 of 8)	B3|SINE|B2	1101.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	6.98058000407598	7.22746345480751	6.93186333003371	7.40260172145837	7.6581440867905	7.23045663704839	0.583809907501509	0.024302854760449	0.183538985515195
Merged-chr7-114527978-3	chr7	114527477	114528477	+	951.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 12 of 15)	intron (NM_011055, intron 12 of 15)	34995.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	4.53008915993189	4.41961127442742	4.26518553834859	4.55996882124506	4.14582809428816	4.67059215524418	0.13429239425155	0.77597073599028	0.944804182096302
Merged-chr13-21172372-4	chr13	21171887	21172887	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-7544.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	2.97608026612729	2.6250849920652	3.22627085852216	2.85908373667691	2.61997630819857	3.02535739935249	-0.566678736664401	0.471822324418387	0.820347952654892
Merged-chr2-132180872-1	chr2	132180372	132181372	+	959.0	f0_balb.idr	Intergenic	Intergenic	-35552.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.07916178472576	4.071568682028	4.46373797853584	4.02004076741487	4.11185622162196	4.52882519506804	0.0586721452660129	0.907905720014976	0.979069714243211
Merged-chr14-16250270-2	chr14	16249760	16250760	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027695)	promoter-TSS (NM_027695)	-452.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	5.54339094272194	5.7943312629136	5.68784244265702	5.80259519468567	5.69370119783142	5.87513227263726	0.193005720512917	0.540262784020705	0.85632302227606
Merged-chr2-127080125-4	chr2	127079594	127080594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	MTD|LTR|ERVL-MaLR	9437.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	8.24046400357017	7.9091375538371	7.91350732570355	8.13248950755657	8.08766108368366	7.96962981382189	0.0465224867928652	0.837934933373853	0.962292318489704
Merged-chr1-138993702-1	chr1	138993202	138994202	+	642.5	f0_balb.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	16045.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.38761827321847	4.37216368391772	4.41430576457989	4.29350221253522	4.40129981011872	4.05706174144914	-0.315519723417678	0.494456525905399	0.832036472279676
Merged-chr7-118703936-2	chr7	118703446	118704446	+	853.0	f0_balb.idr|f0_c57.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1792.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	8.03835687160171	8.15986541704546	7.54398453431388	8.61781950451932	8.90100857279401	8.0708829276671	0.885678433267406	0.00306875285454877	0.0428287131032027
Merged-chr2-124735973-2	chr2	124735473	124736473	+	812.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	82392.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.68165178400681	2.64395477523175	2.84152676284595	2.88433227611815	2.85217480103114	2.66325639774474	0.453038213294867	0.53967130542501	0.856057704035328
Merged-chr2-75907324-2	chr2	75906824	75907824	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 17 of 19)	intron (NM_172666, intron 17 of 19)	31138.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	2.66734619055087	2.78576087932595	2.80528351297058	2.86670340784685	2.72956904747232	2.87819469329135	0.364448821146888	0.612024949208492	0.886473391147181
Merged-chr5-24383618-4	chr5	24383124	24384124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001002897)	TTS (NM_001002897)	8519.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	5.16725243141415	4.98108815812208	4.79464296560257	4.74606116298384	4.50623451881293	4.56933168036857	-0.887724593213477	0.0300253809582555	0.209084601119301
Merged-chr5-21283927-2	chr5	21283427	21284427	+	866.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359876, intron 25 of 29)	intron (NM_001359876, intron 25 of 29)	-88746.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.33872676924352	3.30311284494028	3.41522590643305	3.10974880961663	3.27392665526378	3.1459240341665	-0.685042541408264	0.276034880530497	0.673393624422867
Merged-chr2-93462015-4	chr2	93461520	93462520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-169.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.9026137362233	7.70127499504936	7.18161361540318	7.47342895600332	7.38966063810884	6.98827855592763	-0.484205543062835	0.0990794884161748	0.419744721354975
Merged-chr5-90742250-4	chr5	90741762	90742762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17036.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	4.93882752280031	5.03551808588519	4.64175649607191	4.85297673829818	4.7396283111715	4.62302956621044	-0.333843002035639	0.413379559193673	0.785003226176761
Merged-chr8-81767881-4	chr8	81767382	81768382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	425320.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.5189893189286	5.97729591728752	5.61484739023233	5.15884148576441	5.30747805168278	5.62343169250502	-0.675353643268628	0.0621745812973934	0.323926025959145
Merged-chr7-16119059-1	chr7	16118559	16119559	+	1000.0	f1_balb.idr	promoter-TSS (NM_133727)	promoter-TSS (NM_133727)	-817.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	3.98977074591351	4.33573493479399	4.39479364427379	4.380810152495	4.289151373716	3.99256085981511	-0.027730891646356	0.955454898806639	0.989763164889919
Merged-chr12-29713062-2	chr12	29712573	29713573	+	773.708374	f0_c57.idr|f1_c57bl6.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-26628.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	4.91155876467999	5.11629782498825	5.03546555822143	5.79981614835334	5.57555605228073	5.63296518276465	1.27573231602575	0.000245896901731093	0.00592202298096693
Merged-chr10-13987553-4	chr10	13987029	13988029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	21150.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	7.91696931825222	8.09876271629764	7.83674410253483	7.97611540151785	8.17705411683684	7.5464212753382	-0.0316130920083555	0.902670740651	0.977580005571747
Merged-chr8-41053512-4	chr8	41052958	41053958	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	1338.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.11107740704031	3.07702627344549	3.00726604369483	2.82352473863121	2.71907984255648	3.02071952135394	-1.05441678107103	0.136986463047206	0.494491180713817
Merged-chr8-90873263-4	chr8	90872704	90873704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	44369.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.74798876135495	5.74376713474439	6.0996092860927	5.01332564478041	4.97643186395822	5.20435737750905	-1.56751371776884	8.36624956454894e-06	0.000343263754322973
Merged-chr12-102391085-10	chr12	102390555	102391555	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161365)	TTS (NM_001161365)	48758.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.50847632013303	3.30462175528911	3.72945648839635	3.52296442141877	3.41952407542407	3.74993664441189	0.1660087019497	0.781614970592524	0.946260244796369
Merged-chr9-124112757-4	chr9	124112274	124113274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8769.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	4.61359759608621	4.5027125812575	4.67771372287871	4.60201388129505	4.42433828226306	4.45790442955406	-0.246071039990832	0.560506662471703	0.865261302076164
Merged-chr4-59626109-4	chr4	59625604	59626604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153158)	promoter-TSS (NM_153158)	-107.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	5.08025859511013	4.55809878958537	4.72826211259161	5.13836643414225	4.5936546665004	4.39203672916274	-0.130661923556487	0.785250831543726	0.947850129107983
Merged-chr18-8694347-3	chr18	8693829	8694829	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-518527.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	3.44274074779635	3.392213400708	3.76479498063845	5.26484202126403	5.30951740179127	5.5776847346611	8.66445655481654	1.6576767677785e-12	3.04485581662944e-10
Merged-chr11-106488457-3	chr11	106487961	106488961	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-665.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	6.91295169537021	6.76593957363622	6.70353364627347	6.84537411546284	6.93949470616312	6.61015094806568	0.02221260813094	0.932282219799483	0.985087224393733
Merged-chr16-30447866-3	chr16	30447354	30448354	+	850.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59324.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	2.86877274829305	2.85755508878711	2.81895233490438	3.15577123185157	3.02532190904443	3.0182878435852	1.04202586632653	0.129463372834262	0.481275446847754
Merged-chr16-24785973-3	chr16	24785446	24786446	+	811.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 8 of 12)	MTE2b|LTR|ERVL-MaLR	64091.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.18366439590542	3.10175955594493	3.23249865658406	3.07976514798003	3.15953176042765	3.24763439904788	-0.0395993127363315	0.950246130063392	0.988400419899929
Merged-chr13-56352644-4	chr13	56352204	56353204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10196.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	6.82926517618842	6.73900095284663	6.93223878540872	6.85253038756964	6.73035398536147	6.22422187985628	-0.297377178109773	0.308111799818426	0.704129817063763
Merged-chr3-94565704-4	chr3	94565161	94566161	+	879.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	17055.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	4.09755713505726	3.95366182821322	3.96650353597265	3.5363503358239	3.21605433231912	3.62911284039379	-1.94076370282824	0.00112314078268738	0.0197036260269558
Merged-chr5-93120622-3	chr5	93120139	93121139	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	27223.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	2.85077525347741	2.77324845074401	2.88349901175427	2.6019572917298	2.7967370330657	2.95540049422092	-0.231097445803585	0.753287898391084	0.938549578325581
Merged-chr19-56739382-2	chr19	56738882	56739882	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17010.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.04139874071077	3.91940811397927	4.06338537689783	3.76522543894616	3.98312367905233	4.21937419191541	-0.0329927947350255	0.94864428440813	0.988151190239158
Merged-chr13-107782828-3	chr13	107782319	107783319	+	803.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	95422.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	3.86584228830965	4.2805813927967	4.00097145716188	3.7464292592537	3.75393359830267	3.81911415693345	-0.911494380243861	0.0842622519021147	0.384075237264923
Merged-chr9-121904565-4	chr9	121904080	121905080	+	912.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276719, intron 2 of 3)	intron (NM_001276719, intron 2 of 3)	6225.0	NM_021609	59289.0	Mm.258105	NM_021609	ENSMUSG00000044534	Ackr2	AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6	atypical chemokine receptor 2	protein-coding	3.44815325091598	3.17130467236178	3.19526165404274	3.48770754802015	3.30746706667368	3.44169574866292	0.508379396607588	0.413577797694159	0.785236312391001
Merged-chr12-21405097-1	chr12	21404597	21405597	+	890.0	f1_balb.idr	intron (NM_011739, intron 1 of 4)	intron (NM_011739, intron 1 of 4)	12339.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	4.15347870889078	4.00160548230712	4.04384397580089	4.36494061901452	4.6151332066455	4.85337118168998	1.44910224977497	0.00220106404579251	0.0332147510196415
Merged-chr3-52019811-4	chr3	52019334	52020334	+	857.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	85172.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.57842699230718	3.44154900411037	3.23566707832017	3.33532507078935	3.38536167720506	3.36817740252018	-0.265067834100212	0.663682669470465	0.907297356021587
Merged-chr16-91727537-4	chr16	91727022	91728022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	1280.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	7.97411385132529	7.95339833572108	7.8456200209157	7.78923486336014	8.14744375459797	7.55182225181041	-0.0897869330373167	0.721727228345006	0.928606209603791
Merged-chr2-155755922-4	chr2	155755423	155756423	+	934.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011171)	TTS (NM_011171)	4706.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	2.69613646191556	2.80725091751602	2.96205404754536	3.0991562695196	3.20646980856079	3.09463354427326	1.53975013765959	0.0294125611472393	0.2062324418926
Merged-chr5-144935429-4	chr5	144934912	144935912	+	910.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	30418.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	3.26922862249824	3.24765495205615	3.4796105236046	3.67388783185934	3.35560132883529	3.44137544710864	0.63438108739231	0.295775036723641	0.692654652514324
Merged-chr15-81858305-4	chr15	81857780	81858780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	46.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	8.16242444223224	7.838351596696	8.00535625649463	8.02355489387911	8.27579133415569	8.11824768527973	0.193933894763977	0.392599085797925	0.771214636708298
Merged-chr1-172205935-4	chr1	172205461	172206461	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	843.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	6.77476698005331	6.78730446385351	6.57526700912106	6.33842543895381	6.62661262954063	5.97945801627538	-0.575976441361159	0.0599413217306662	0.316977949287174
Merged-chr15-66823148-3	chr15	66822648	66823648	+	949.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	8681.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.6913860859413	3.2853221682915	3.79770213819834	3.42069025655213	3.3998101094236	3.45969233612349	-0.649855640910296	0.287393934678855	0.684655137401853
Merged-chr1-88245000-2	chr1	88244500	88245500	+	895.125	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 23 of 42)	exon (NM_001281466, exon 23 of 42)	17980.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.43369123493447	3.5750390487182	3.55779844284904	3.38269918624704	3.3096762536301	3.81851813525433	-0.0330178651212832	0.956836712389264	0.989887454023164
Merged-chr10-80642770-2	chr10	80642270	80643270	+	691.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145361, exon 9 of 9)	3' UTR (NM_145361, exon 9 of 9)	13114.0	NM_001159591	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	2.40988499424648	2.30692752484433	2.59883636908907	2.21470486232282	2.37489950795716	2.15533479931302	-1.21454880771771	0.183767908737839	1
Merged-chr11-54093786-2	chr11	54093286	54094286	+	697.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7138.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	3.28927251862619	2.97000488642947	2.87754026713789	3.01545592971452	2.8855185768985	3.13529100134103	-0.230328240992257	0.744547377859523	0.93602001132266
Merged-chr14-60634729-4	chr14	60634227	60635227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033272)	promoter-TSS (NM_001033272)	22.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	3.83565248374702	3.76389208550034	3.68480339602983	3.9692298223232	3.65693525305144	4.05368406250722	0.411102469144838	0.446934616319026	0.806159145464037
Merged-chr5-103755494-4	chr5	103755004	103756004	+	920.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	931.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.35788516453743	6.12233380211535	5.99024360697826	6.39730845385638	6.48333280564738	6.25470284711491	0.354259462513931	0.222298526147481	0.617225566059783
Merged-chr6-125146505-2	chr6	125146005	125147005	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1281.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	6.68445513815764	6.43477751618816	6.42766739390114	6.5632337895887	6.68400643651621	6.71041487502217	0.202812199232655	0.447006349846438	0.806192655583979
Merged-chr4-11156992-3	chr4	11156483	11157483	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199105, intron 1 of 4)	intron (NM_001199105, intron 1 of 4)	542.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	6.61381007562204	6.88832726438081	6.5161551731824	6.61472613027414	6.74860115180093	6.61090797677887	-0.0433204950514698	0.872522853553417	0.970261003150518
Merged-chr17-40708962-4	chr17	40708477	40709477	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-18143.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	4.24108590614176	4.32233319801954	4.16785880274186	4.34711733953122	4.60775259361949	4.46449533934783	0.604973959808788	0.178569880519722	0.55984058736607
Merged-chr2-59338639-4	chr2	59338114	59339114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48068.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	7.95891426085179	8.16574288068144	7.68485146668169	7.84276361985184	8.06545225667934	7.40794817721334	-0.209148931498174	0.448644541130599	0.807334258089693
Merged-chr11-69767682-4	chr11	69767183	69768183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	1771.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	8.39042378944595	8.44470436209575	8.17683669869037	8.46818902439375	8.5050591446664	8.15656994306218	0.0625664498477632	0.781402099433946	0.946174647340264
Merged-chr7-99401604-4	chr7	99401103	99402103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201352, intron 2 of 17)	MIR|SINE|MIR	20085.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	4.74703067667425	4.02290363594684	3.95707147263426	4.17192749764907	4.08152153952105	3.80244979243302	-0.743993482308915	0.194384673913026	0.581623213598297
Merged-chr11-64832332-4	chr11	64831841	64832841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146694.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	4.67388913918106	4.75306697529545	4.58903724203872	4.66516662845375	4.71111824466954	4.52748340328581	-0.0829051268482056	0.83974087202334	0.962784121274377
Merged-chr6-73210620-4	chr6	73210123	73211123	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 2 of 76)	ORR1D1|LTR|ERVL-MaLR	11008.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	3.01620436155226	2.93752138372991	2.87319019809256	3.28094108981306	3.0952752717407	3.46671971889379	1.48787842334736	0.0308439351779001	0.212543449961301
Merged-chr2-3285281-2	chr2	3284781	3285781	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008708, intron 1 of 13)	intron (NM_008708, intron 1 of 13)	1069.0	NM_001290370	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	4.95357398940103	5.05251677068315	4.86971692009704	5.18853971902325	4.93361376186409	4.89742370213377	0.104204249095054	0.784613962120092	0.947710697182936
Merged-chr3-84883964-4	chr3	84883486	84884486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	B4|SINE|B4	19841.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.63831239842339	5.8228374739875	5.56721247139194	5.29569120009814	4.91858680119784	5.08913214721752	-1.14117800410716	0.00130563231447455	0.0222047397637357
Merged-chr11-31713793-1	chr11	31713293	31714293	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-41931.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	6.29933535345032	6.69891358788908	6.46451117398117	6.25567923604205	6.46369414081439	6.02135453564614	-0.373087019160253	0.218532895235445	0.61273880821229
Merged-chr9-31385593-2	chr9	31385093	31386093	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-599.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	5.06886719807919	4.9757060384802	4.72824979970778	4.85656755695417	4.5693675920107	4.67149965744986	-0.548161623438694	0.178328057310976	0.559402033136986
Merged-chr9-58269561-4	chr9	58269053	58270053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16389.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	5.77252359841504	5.80832219640627	5.83222274404969	6.16247906936483	6.12998057638938	5.84307611244021	0.454523206403007	0.131517320871166	0.484838652919585
Merged-chr10-81523782-2	chr10	81523282	81524282	+	873.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	443.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	7.03140633618235	7.56003466622735	6.98865985827014	7.49784629936927	7.69334575202204	6.65078276259203	0.204341646257518	0.558683891012645	0.864744077984264
Merged-chr2-173019442-3	chr2	173018919	173019919	+	768.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2483.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	3.82947945479434	3.85280711239026	3.78935051127272	4.04347929881848	3.93401953591196	3.91154865071044	0.430522190002743	0.394598048530321	0.772514857254462
Merged-chr5-146221453-4	chr5	146220963	146221963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-6.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	7.1201697491197	7.41141069937107	7.66176700491193	7.65616713037224	7.83262223944468	7.70097026839424	0.47281902590389	0.0612119095906662	0.320798675645283
Merged-chr15-6391355-2	chr15	6390855	6391855	+	888.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4607.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.55480449274413	5.75460532217507	5.72782521659512	5.60716572576017	5.37363967396837	5.32999884762018	-0.444213209128334	0.180924484230801	0.56305619831836
Merged-chr2-165876394-3	chr2	165875909	165876909	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	2028.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.1960200404691	5.00489745815845	5.03356075647855	5.66308029706529	5.94337931951294	6.11974627588091	1.5873431383413	5.89726438250934e-06	0.000254644304483569
Merged-chr14-47647118-4	chr14	47646621	47647621	+	919.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2190.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	4.82442118405414	4.44917137193836	4.80669615283272	5.44979331142883	5.67409632495017	5.33301012010815	1.69056737855142	1.41998313200738e-05	0.000542239359559754
Merged-chr15-76818706-4	chr15	76818242	76819242	+	826.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-572.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.68505113801648	5.96169359133887	5.40632448349125	5.39994060648056	5.65061903053361	4.99631487641194	-0.600176085218153	0.126652020052907	0.475595257221969
Merged-chr9-110131969-4	chr9	110131450	110132450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009211)	promoter-TSS (NM_009211)	-74.0	NM_009211	20588.0	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	6.45414137607871	6.52649029255981	6.75705910531268	6.48316412091625	6.36438159288679	6.69563918868669	-0.105660226481412	0.703352228109039	0.922108924938678
Merged-chr15-38567596-3	chr15	38567089	38568089	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045757, intron 2 of 2)	intron (NR_045757, intron 2 of 2)	27345.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	2.93356518097938	2.73515000639965	2.90325595819797	2.71159281326724	2.43161922612544	2.85767027151318	-0.988329825296675	0.21616221583566	0.609585360782674
Merged-chr2-31025717-4	chr2	31025213	31026213	+	964.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177649)	TTS (NM_001177649)	43434.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	4.04864715778076	3.87291497695567	4.50683870177591	4.31355501566827	3.90342836530632	4.33640243832616	0.0894231009021847	0.867429927094153	0.969329865332858
Merged-chr10-99194291-2	chr10	99193791	99194791	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68940.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.78060134443628	4.57823232996816	4.58421290424747	4.91069287649786	4.99106327055436	4.85336496290406	0.61281659561281	0.122697550079857	0.468665889967166
Merged-chr13-49183941-4	chr13	49183434	49184434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3613.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	4.50491274436388	4.58977841547077	4.81494042800585	4.82132815680312	4.55605881051012	4.94893664305806	0.329728333518221	0.435826572681286	0.799370838506028
Merged-chr1-151036704-4	chr1	151036224	151037224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43289.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	6.07097633743224	6.04271204917829	6.12968510902337	6.23950671734165	6.31847879553608	6.21116839243633	0.309253105720995	0.265866970683114	0.663674403642054
Merged-chr9-65540444-2	chr9	65539944	65540944	+	987.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	39643.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.88889425023755	5.56619415210795	5.69532381427022	5.44107340423404	5.48274217296464	5.78185660876699	-0.294824379789699	0.378768345703366	0.761251093193055
Merged-chr7-45457470-4	chr7	45456963	45457963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010240)	TTS (NM_010240)	2423.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	7.86935586312066	7.75589855617963	7.59456546423232	7.46310687307974	7.70737303761099	7.58368075824733	-0.229266809373569	0.321310512559768	0.714837665357421
Merged-chr1-159233779-4	chr1	159233199	159234199	+	813.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	1499.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	5.95909946966493	6.10816323598745	6.27025022576168	6.03586093842622	6.31844473555596	6.31082002568134	0.199245931430812	0.500022928015077	0.834921806675451
Merged-chr1-177982774-4	chr1	177982268	177983268	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8630.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	6.53619632127507	6.37924830271639	6.09488782825617	6.70959757909991	6.75551998503339	6.22579152327599	0.38204906339145	0.215429270776473	0.608899282194137
Merged-chr17-21962317-3	chr17	21961790	21962790	+	968.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	174.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	6.42666858254439	6.79698177169716	6.40334067917081	7.08656023758291	6.81846443587954	6.7624883400889	0.524072179618408	0.0637331540909761	0.328994954702847
Merged-chr7-96484996-1	chr7	96484496	96485496	+	863.5	f0_balb.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-143032.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.16953835118905	3.53836250332824	3.37657711183784	2.91983568418573	2.9703889284028	2.91375641162674	-1.97217797114269	0.00538422963696667	0.0644527376827396
Merged-chr5-113014470-2	chr5	113013970	113014970	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	1068.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	4.37156952384168	4.26419488147031	4.31178024025987	4.35289426515794	3.92747388880861	4.14984635725422	-0.456254404521769	0.342767954995347	0.731651201867618
Merged-chr10-80963818-4	chr10	80963319	80964319	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33728.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	5.35700990967323	5.26890356748454	4.72944523979179	4.75799123110053	4.46089768631683	4.32461718496431	-1.40542708156545	0.00181852558807039	0.0287030595708649
Merged-chr15-76068840-2	chr15	76068340	76069340	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310542, intron 1 of 36)	intron (NM_001310542, intron 1 of 36)	944.0	NM_134089	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	2.91922445040162	2.98463831263945	2.86759227118594	2.90029988918224	2.78929870871809	3.17288816836693	0.142423031449668	0.840363336971558	0.962819298477451
Merged-chr10-75146811-4	chr10	75146369	75147369	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65204.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.16899767103131	4.06865485916529	4.38581642076899	4.41057989309486	4.49864708070293	4.13234477695829	0.429752139408273	0.364832834672442	0.750028369485675
Merged-chr1-127774063-4	chr1	127773568	127774568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	-14.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	7.90467916916974	8.22145414861927	7.74324045609487	7.9233826838235	8.07554320943528	8.00338705813296	0.0339270028014687	0.88674440407904	0.973794308941933
Merged-chr2-61585623-4	chr2	61585115	61586115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	7029.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	5.84772931246473	5.70427354890496	5.40422648611851	5.62467475327418	5.77835424811851	5.4364897453538	-0.082033050247896	0.810563772521526	0.955054272231421
Merged-chr2-91190655-3	chr2	91190159	91191159	+	931.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 5 of 9)	intron (NM_001355279, intron 5 of 9)	4376.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	4.3170643731102	4.41524863966499	4.67792610780007	4.67319405292513	4.83150283843227	5.08576088602189	0.94680637757415	0.0277588792258704	0.198830801268517
Merged-chr11-50108242-3	chr11	50107740	50108740	+	881.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-23120.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	6.7906904626355	7.02412924376337	7.03932431227801	7.10358775243326	7.44835471236842	6.84020432857765	0.323907326377354	0.246569484051512	0.643717169583277
Merged-chr1-52118528-2	chr1	52118028	52119028	+	703.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-910.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	5.79224681183771	5.82272677093683	6.01430746178851	6.19489866029068	6.2314738189985	6.30178904890638	0.636362339353582	0.0274573911632769	0.197507713894285
Merged-chr2-120567094-1	chr2	120566594	120567594	+	784.0	f1_balb.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-577.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	6.85069594304311	7.0750900739804	6.87511931307896	7.14109226181233	7.46753402440077	7.10028869309771	0.475197169694846	0.0663005274355067	0.33620173605056
Merged-chr12-100087938-2	chr12	100087438	100088438	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24393.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	4.9641817964654	4.7825191741614	4.99024949043248	4.97540246592241	4.91252462583492	5.02007713417627	0.121438321698981	0.748188339323251	0.936880860325556
Merged-chr7-126775407-2	chr7	126774907	126775907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-1568.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	3.56966846202438	3.26168592331868	3.84931226907919	3.0484271752033	3.16674134055473	3.48821811510072	-1.28676300681508	0.0573368249320662	0.308983065086188
Merged-chr5-104044307-1	chr5	104043807	104044807	+	630.0	f0_balb.idr	Intergenic	Intergenic	-2557.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	3.54120702013685	3.58813451061134	3.41890201860715	3.43724181447469	3.54264397548604	3.31471470088457	-0.297038959956881	0.615640713313534	0.888073730124794
Merged-chr2-10048641-4	chr2	10048117	10049117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-8.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	6.0922283413959	6.53663570509841	6.16738995058343	6.64641833706607	6.76029784671084	6.22853325433905	0.466680400242658	0.136678894748996	0.49382446696806
Merged-chr12-12176393-4	chr12	12175841	12176841	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85798.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.53671094325044	4.63384898133102	4.78783486220692	4.87609609106946	4.79891279492021	4.69879877154603	0.343602247935597	0.394041733808765	0.772046311610617
Merged-chr5-117136067-3	chr5	117135592	117136592	+	837.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	2504.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.0679699833889	4.17047136085559	4.16324622327074	4.19689515520291	3.76812001241695	4.09225661850063	-0.316017966489282	0.531499969821353	0.851660943785533
Merged-chr10-43742876-4	chr10	43742370	43743370	+	939.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-3288.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.31636143381704	4.43316301018339	4.15348348590557	4.20778417770369	4.38202304190193	4.53124037463802	0.16220564707609	0.724982203221304	0.929475409375828
Merged-chr18-53267103-2	chr18	53266603	53267603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	21441.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.61933940941795	8.98826002527125	8.41976513786288	8.67817561167952	9.10989719029553	8.3194965126012	0.0673357096221167	0.813642416803728	0.955940138311315
Merged-chr18-10706807-4	chr18	10706306	10707306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	-54.0	NR_045379	75370.0	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	4.95506296717069	5.16500948095131	5.20573778639393	4.97641154504283	4.83221462104424	4.77792881710176	-0.527525842525157	0.166381556703591	0.541638363466057
Merged-chr11-11555787-2	chr11	11555287	11556287	+	696.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66521.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.16491976050616	2.66748750652663	2.99757958358309	3.34799173269512	3.01165256102104	3.41338967924055	1.32335650716287	0.0829948168786149	0.381158666676001
Merged-chr3-115763457-4	chr3	115762959	115763959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48404.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.15818314452112	6.64068791806282	6.54530167086203	6.11350820537765	6.25803479192867	6.21432195726946	-0.437751388923668	0.141355869678739	0.502119843364898
Merged-chr18-39718355-2	chr18	39717971	39718971	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55026.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	2.63619264187399	2.82862767708854	2.78893539435708	2.9913437728217	2.89418661369797	2.9242590904537	0.923897355767563	0.198138289804327	0.586422807783967
Merged-chr17-56289626-2	chr17	56289126	56290126	+	930.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	885.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	6.07826032061865	6.34157798970107	5.62109610240484	6.30585291307486	6.1306788559167	5.93644441735078	0.127776472186056	0.708156538859258	0.92362163244982
Merged-chr8-119838970-3	chr8	119838483	119839483	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	1596.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	8.03586591282926	7.93321701823056	7.72253832044388	7.82786006579824	7.97918067705782	7.8224915573897	-0.0393546981910455	0.861090186996798	0.967789299492425
Merged-chr2-21205315-3	chr2	21204823	21205823	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	42.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	6.67222051646407	6.33219245153459	5.9650534430255	6.2919286772387	6.24419718892244	6.09991208580789	-0.248446689082209	0.436485592780506	0.799486950869076
Merged-chr7-101379856-4	chr7	101379281	101380281	+	970.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	1659.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.16309478647667	6.11326799257695	6.40523457162458	6.28395992109019	6.41048970726632	6.48219176818744	0.279940393860601	0.319464242904741	0.713488854059233
Merged-chr6-34368672-2	chr6	34368172	34369172	+	647.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008012)	TTS (NM_008012)	14526.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	5.98426138677602	6.22091762637168	6.08497468958322	5.9203524324055	5.98882581708857	5.37905934184728	-0.513082005685845	0.130487376531964	0.482709893143273
Merged-chr6-122560548-4	chr6	122560037	122561037	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009645, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	6728.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	4.47066395313276	3.96576270197826	4.04829191862079	4.55329082112742	4.11484646554204	3.9600321136164	0.138912353038857	0.79628250049177	0.951410019719943
Merged-chr4-129069039-4	chr4	129068519	129069519	+	922.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10748.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.13919247673098	5.49910295104751	6.06714490259162	6.05187893441781	5.75062400368356	6.10645056711768	0.0752207778135388	0.829899119914092	0.960134151531511
Merged-chr12-16881915-4	chr12	16881428	16882428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13050.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.7322246669361	8.04262016844933	7.55518480117571	7.73692961188303	8.15300296035619	7.63184131757134	0.100562627477473	0.709139508323812	0.923909555179111
Merged-chr4-141664832-2	chr4	141664332	141665332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-717.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.33414394631106	6.7290083433948	6.43313522922527	6.55105819478167	6.63027848706038	6.6330250495972	0.142552691801865	0.606357720744228	0.884048762047724
Merged-chr15-55388288-4	chr15	55387794	55388794	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 13 of 47)	intron (NM_181277, intron 13 of 47)	80544.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.30604349591573	4.67326476792012	4.5676377476476	4.19666283012957	4.29263789767258	4.55454956662516	-0.449452780930125	0.327512401371956	0.7197087001184
Merged-chr7-109517588-2	chr7	109517088	109518088	+	753.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1607.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	3.95225752413732	3.96514656163934	3.94617751476704	3.96752683786129	3.96428841327889	4.01515177578032	0.0774296854208019	0.874682995995857	0.970754540400126
Merged-chr12-112679256-3	chr12	112678821	112679821	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100460, intron 1 of 1)	CpG	481.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	3.71766565470821	3.68493875133961	3.50774671827457	3.58223508921716	3.20735495266067	3.40783740791546	-0.881206587265478	0.144813437006357	0.507645438049158
Merged-chr17-78918611-2	chr17	78918110	78919110	+	758.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024806)	TTS (NM_001024806)	2111.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	5.32130760428566	4.93340783169343	5.23094927462587	5.09050837136202	5.58307480895513	5.32637130593907	0.376486467291548	0.326508199425761	0.71871363873492
Merged-chr1-179232632-2	chr1	179232132	179233132	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285409.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	2.41894022744336	2.44988320011585	2.47881997981964	2.47974569700759	2.37588637521417	2.67443549738208	0.375123858414708	0.640007319441586	1
Merged-chr1-38013325-4	chr1	38012803	38013803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	15293.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	7.05059616000032	7.3978548106662	7.04289597929992	6.9808417373457	7.44707409786415	7.03298255424275	0.0012988032192745	0.996265380672797	0.998961028701257
Merged-chr18-53951280-4	chr18	53950789	53951789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 12 of 12)	intron (NM_152809, intron 12 of 12)	89176.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.95940224517069	3.77567745510642	3.50519205343065	3.66896595730568	3.60296304904285	3.94636803381276	-0.0859042429970337	0.881030418023538	0.97262624933271
Merged-chr10-81411823-3	chr10	81411316	81412316	+	910.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152732)	TTS (NR_152732)	2241.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.62057780062943	5.33698578346939	5.62159682520316	5.46902595550921	5.32503009406109	5.60391294048851	-0.127788770023002	0.707970794386095	0.923606271223831
Merged-chr4-133625019-3	chr4	133624490	133625490	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	8439.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.32027226789424	3.44548727689852	3.17464411732833	2.70968716483555	2.77929215271798	3.13070806083625	-2.1465475137691	0.00516611710418246	0.0625436158889588
Merged-chr19-3914107-2	chr19	3913607	3914607	+	738.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1333.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	7.00712508700959	7.27647678065175	7.05060240946362	7.1974118287492	7.37378530100779	6.95555642190168	0.114924992109318	0.657711715608476	0.904859102731141
Merged-chr4-135300475-4	chr4	135299980	135300980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-27720.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	3.35336342493357	3.21274419869781	3.30164404264278	3.52989487269257	3.56551984496496	3.43155010962481	0.862840741558006	0.146910444933141	0.51140544291498
Merged-chr1-181856103-3	chr1	181855652	181856652	+	940.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13751.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	3.26910754458714	3.60965142758421	3.53022504322729	3.34848292070712	3.26164718254517	3.44019675321687	-0.498427895700153	0.413153149691136	0.784770288990094
Merged-chr2-84618841-4	chr2	84618335	84619335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	MIRc|SINE|MIR	30645.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.64994920920837	6.52638389022859	6.66100588220637	6.68913984580489	7.06398316699663	6.78305087627465	0.395999268728002	0.138053220478463	0.496590539926161
Merged-chr10-91154123-4	chr10	91153664	91154664	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 4 of 8)	intron (NM_001080129, intron 4 of 8)	16386.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	3.55925532077287	3.17004945578588	3.5189761490714	3.51842294480402	3.54626732239894	3.88477629224179	0.817285954677587	0.184563466664943	0.56829044423897
Merged-chr7-140952858-2	chr7	140952358	140953358	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2619.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	6.56070397278834	6.11270889118512	6.72807488148176	6.17426666697894	6.11507056622209	6.3032260083442	-0.477752370584144	0.122781603498476	0.468836293144013
Merged-chr4-41773684-4	chr4	41773188	41774188	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154591, intron 2 of 4)	CpG-9830	413.0	NM_001361246	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	3.36417906369535	3.31733569321654	3.48388882446836	4.40583649576942	4.5118150599193	4.42162301641692	3.81203873707729	1.98633282439682e-09	2.07376137581444e-07
Merged-chr10-75764363-4	chr10	75763867	75764867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-10.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	7.27779315661444	7.22859204060956	6.90347023780231	7.00890083813142	7.04394353389775	6.79230937889221	-0.296579254744657	0.251642770568518	0.649120862245876
Merged-chr7-80829174-1	chr7	80828674	80829674	+	987.5	f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25843.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.70302430466582	5.29196470994945	5.32300715905765	4.90658543378907	4.90078350248545	5.01712077303444	-1.0700734755751	0.0041119065088853	0.0530215840918682
Merged-chr2-93045647-4	chr2	93045153	93046153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177536, intron 1 of 6)	CpG	491.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	6.80130031438726	6.64300901242497	6.60179885152707	6.88794687847708	6.01282002104011	6.28521602555158	-0.373095840381676	0.267048475227392	0.66453138559114
Merged-chr5-140750501-2	chr5	140750001	140751001	+	721.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	26374.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.80925666852845	3.06357590818018	3.18518249799933	2.97228511958074	2.84260456578526	2.97148205789184	-0.454841840341889	0.516644522369603	0.844296391152365
Merged-chr2-170121441-3	chr2	170120945	170121945	+	891.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	9775.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.53081744018724	4.29914630770973	5.00045245116235	4.69697325940758	4.31085305144128	4.35126938923461	-0.409508077568146	0.400070542724037	0.776362382142343
Merged-chr11-49236062-4	chr11	49235562	49236562	+	890.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8129.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	5.46036359597096	5.14115013421575	5.52019438633853	5.11831402678653	5.37826620872079	5.19103915357552	-0.270862858810913	0.457572067675057	0.812344696037543
Merged-chr14-16302914-1	chr14	16302414	16303414	+	602.0	f0_balb.idr	intron (NM_021504, intron 10 of 11)	intron (NM_021504, intron 10 of 11)	-53106.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	3.29522180212014	3.39081121145798	3.40689082457016	3.36035268249848	3.14891257018052	3.31116448038109	-0.367903505221261	0.547674771456717	0.859390921292369
Merged-chr6-5038219-3	chr6	5037718	5038718	+	628.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	134898.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	2.84284392491258	2.9272038184694	3.07852793666235	2.92737290393416	2.81198627599092	3.25825204748089	0.26094843031513	0.713261962574486	0.925464320072009
Merged-chr5-121845725-6	chr5	121845212	121846212	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3285.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	4.8129433180858	4.50463313712081	4.91479287498741	4.15474789028318	4.17330388145212	4.37169421581548	-1.3200435189799	0.00367078735123176	0.0488233494119713
Merged-chr8-105333402-2	chr8	105332902	105333902	+	917.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177699, exon 13 of 22)	exon (NM_177699, exon 13 of 22)	7038.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	4.18788202772489	4.13239080434056	4.39353291298415	4.51117232949041	4.26324644611074	4.61899529936306	0.602468629651292	0.191466800882631	0.578091345710453
Merged-chr12-28733418-3	chr12	28732856	28733856	+	892.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	B1_Mm|SINE|Alu	17038.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.42866203880947	6.68804074017775	6.9228236948707	7.19376574208308	7.42890617273347	6.99494890250104	0.825433356358241	0.00313273143698551	0.0435463276660024
Merged-chr12-3349091-2	chr12	3348591	3349591	+	983.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-16041.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.14979368676661	4.71526477672782	5.21016308915572	5.30789618318296	4.79658811816976	5.39116040865392	0.300677510221369	0.477629486565565	0.823288262965788
Merged-chr14-31390594-2	chr14	31390094	31391094	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27083.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.24923930556915	7.19821511936143	7.26068001682996	7.08941300378532	7.14112572652237	7.01941672410761	-0.220543658856034	0.343244677755934	0.732134758996586
Merged-chr16-4914297-1	chr16	4913797	4914797	+	606.0	f0_balb.idr	intron (NM_001357062, intron 5 of 17)	intron (NM_001357062, intron 5 of 17)	-24814.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	4.9178378679544	4.90904245981744	5.32604240676424	5.04599100522037	4.72499784780686	4.75158722831922	-0.447048736542372	0.272900779918657	0.670056009190935
Merged-chr17-15803652-4	chr17	15803171	15804171	+	955.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22915.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.57968982270453	3.4121883252206	3.20934002067587	3.55141952413453	3.61843744373609	3.78400542616042	0.842026915244756	0.166172505912163	0.541302113093556
Merged-chr2-71655997-3	chr2	71655550	71656550	+	593.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-63367.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	2.71393938897498	2.54213606865719	2.61678089031902	2.88959500148944	2.72491161689012	2.81822817659814	0.993480533833436	0.185283954412418	0.569470877644115
Merged-chr2-30928501-4	chr2	30927992	30928992	+	890.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24509.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	6.00206723002191	5.8947351191393	6.24339947308477	6.06037908219409	5.96053168257012	5.96381602507222	-0.084081451616507	0.77871349474619	0.945520893795831
Merged-chr3-144586852-4	chr3	144586364	144587364	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	16437.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.70137783716593	5.84096877645076	5.52050292112283	5.61024493216468	5.64488601054392	5.74867785291467	-0.0717652589937258	0.822752760168826	0.958153338614688
Merged-chr8-126588808-4	chr8	126588324	126589324	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4612.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.16844742434234	6.87254348614573	6.6291778557065	6.91375288416169	6.72193134431377	6.60031474971899	-0.252779633081256	0.370634294782148	0.754932275837385
Merged-chr6-115759718-4	chr6	115759222	115760222	+	893.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144805)	promoter-TSS (NM_144805)	-723.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	2.9508854574418	3.03531891324205	2.73634031969284	2.90122073852363	2.89578886825181	3.11691335638341	0.245968404175281	0.731519843734376	0.931448600683264
Merged-chr16-33891768-4	chr16	33891267	33892267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62102.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	7.34227637538437	7.48534387352397	7.21618320006568	7.33662676852953	7.63781971494194	7.35555379540612	0.146741052764138	0.548880266202917	0.860071455679488
Merged-chr1-149940411-4	chr1	149939905	149940905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17966.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.83904467489135	5.93342657110312	6.13892587525335	5.93706401014474	5.97569159124206	6.19890671419813	0.116843831118881	0.699112775156048	0.920515737149593
Merged-chr11-75467979-3	chr11	75467433	75468433	+	956.3833619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291156)	promoter-TSS (NM_001291156)	-117.0	NM_001291156	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	3.8857603083358	3.6326716779444	3.77276039161645	3.34877780013435	3.19006947212067	3.74390129545219	-1.18141933951259	0.057717514921941	0.310423306937164
Merged-chr15-80234706-2	chr15	80234206	80235206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357659, exon 2 of 7)	5' UTR (NM_001357659, exon 2 of 7)	626.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	6.65900077761472	6.75710954849345	6.70317436976811	6.91637403123841	7.01241488667134	6.4799405291938	0.201099747465987	0.46760208395426	0.818056375344009
Merged-chr7-28810746-4	chr7	28810245	28811245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177301)	promoter-TSS (NM_177301)	-145.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	8.13303841060422	8.097207302377	7.82639670391161	8.01272600900233	8.26809227284765	7.9560167439723	0.0855089949583465	0.71236208513767	0.925048627306913
Merged-chr8-80878940-2	chr8	80878391	80879391	+	712.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	1588.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	4.98604909940559	5.09198834573482	5.07648264655321	4.73150711099779	4.63907520689898	4.65833793995967	-0.843792146969427	0.0287192789668623	0.203135245729856
Merged-chr2-131106169-3	chr2	131105678	131106678	+	991.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19413.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	2.98153003942436	2.79138110091262	2.78218428251243	2.60291110629196	2.30325435497729	2.66720708537554	-1.95056008342714	0.0281046041736426	0.200480094667476
Merged-chr12-100520972-4	chr12	100520463	100521463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033213)	promoter-TSS (NM_001033213)	-141.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.93323642928996	4.81440004273846	4.63358511977294	4.76979414465048	4.57746929457344	4.22914411838124	-0.590148283129592	0.187366511141461	0.572271506774537
Merged-chr6-129333983-4	chr6	129333487	129334487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	5.0108979716349	4.62246900160804	4.26905508017231	4.56426397004628	4.59748358788966	4.96062294649688	0.0784804632187894	0.869485442165687	0.969798920359083
Merged-chr15-103500424-2	chr15	103499924	103500924	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2610.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.17605990238032	3.14564082763204	3.24850657545685	2.89688346339675	2.97567759816564	3.26475026384301	-0.620267401139796	0.355430438953313	0.742376471260239
Merged-chr10-98684328-4	chr10	98683849	98684849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-230293.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.05348998870946	5.85211098181669	5.36925898628261	5.2418596924213	5.57985701135213	4.94395857583086	-0.938173545263628	0.0211950263566552	0.167785724772578
Merged-chr14-75189569-3	chr14	75189048	75190048	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	L1MA8|LINE|L1	-52739.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	5.31112742066104	5.28670603705381	5.20266169466798	5.3111144990074	5.28799620804124	5.12988346334156	-0.039951254240718	0.90841489656313	0.979259582109985
Merged-chr5-99338340-2	chr5	99337840	99338840	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1A2|LTR|ERVL-MaLR	-85413.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.11588584417204	7.41863108915264	7.23961291675914	7.31823954838264	7.58657854175643	7.48223496289036	0.300217844604566	0.218236436833578	0.612414823722149
Merged-chr5-64900778-2	chr5	64900278	64901278	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31921.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.99814144771302	3.77041842057242	4.14844234395963	4.36538917839899	4.17646264420876	4.26155995933502	0.845811860865418	0.0860393061505722	0.388409211489627
Merged-chr11-120042627-4	chr11	120042091	120043091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-810.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	8.23143758574885	8.2926758715036	8.10685035405353	7.86523128185869	8.15369924404402	7.71450045229281	-0.398125460460492	0.0894216575472145	0.397298018004519
Merged-chr1-88587562-4	chr1	88587063	88588063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36046.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	7.91305293270209	7.94202505152879	7.67661478102445	7.96947662070003	8.06004180528223	7.41127657587056	0.00169325079348972	0.994921905156947	0.998961028701257
Merged-chr19-4125377-2	chr19	4124877	4125877	+	748.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	481.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	6.14327572776309	5.1001977630414	5.50873474575528	6.12852708453423	5.71352286659712	6.09944463660513	0.570715740881139	0.171322753413454	0.54932102877065
Merged-chr2-152733828-2	chr2	152733328	152734328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2423.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	3.52254549372265	2.9090670841274	3.16719275039486	3.11447105580532	3.10483751740475	3.12063269866792	-0.484594269400895	0.488916437433556	0.829423271678195
Merged-chr3-139042168-4	chr3	139041668	139042668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	33033.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	6.33479679018622	6.14716105165644	6.46618594503265	6.17471510501697	6.30434345728032	6.55801645855361	0.054665476738107	0.851285350914526	0.965211450762173
Merged-chr13-52036532-4	chr13	52036049	52037049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60192.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.89399352171889	6.81038861426344	6.92879027835394	7.04422840149574	7.10114550808476	6.97303540712075	0.258979230122702	0.282544512303536	0.680451612659422
Merged-chr7-104400887-4	chr7	104400369	104401369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42223.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	7.0996636377822	7.1553971712237	7.13019169544466	7.36321866342905	7.61430049226984	7.3971439460024	0.50523459874712	0.031590078831996	0.215348785798191
Merged-chr15-99393378-4	chr15	99392892	99393892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171035, intron 1 of 9)	CpG	173.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	9.01623586333279	9.01963268228658	8.74113364091686	8.94664907525926	9.26811441799726	9.01474893931214	0.206747486015867	0.342062849292691	0.731142095278512
Merged-chr6-83629717-2	chr6	83629217	83630217	+	737.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	26399.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	4.55145312452601	4.31642671733269	4.97531743196922	4.48540691407856	4.70484941174672	4.80316297535054	0.0894538519278977	0.845336060247385	0.963773214686551
Merged-chr17-26535487-4	chr17	26535017	26536017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25995.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	8.78746669832914	8.75856342033716	8.42378133808281	8.40507288088858	8.86425174796682	8.27477458290742	-0.168746819608379	0.509994518160712	0.840623252721494
Merged-chr4-121017266-4	chr4	121016762	121017762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133716)	promoter-TSS (NM_133716)	-15.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	7.15283105379516	7.23705644148508	7.22531481006252	7.20116850989332	7.05321464278756	7.0593536388133	-0.148168989857862	0.527918150541016	0.850244144282611
Merged-chr8-70612014-4	chr8	70611480	70612480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3666.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	7.56179857162237	7.8223323817369	7.23406786479563	7.66435846730751	7.99263851310442	7.68761538066774	0.323096184286284	0.224240152613239	0.6190426237005
Merged-chr2-118927309-1	chr2	118926809	118927809	+	588.0	f1_balb.idr	exon (NM_028117, exon 1 of 1)	exon (NM_028117, exon 1 of 1)	812.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	3.61090127262699	4.00687431470574	4.04432076496977	3.99248364290403	3.97819627427109	3.81718486835237	0.112791765360712	0.833616222787759	0.961104751385188
Merged-chr17-71118202-4	chr17	71117699	71118699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 33 of 36)	intron (NM_001083934, intron 33 of 36)	-65333.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.07948348634573	4.91370582024715	5.13000941725057	4.97595302757365	4.18892900201232	5.09847433627476	-0.507167960113368	0.290083825471185	0.687733205116261
Merged-chr2-156110896-2	chr2	156110396	156111396	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029397, intron 1 of 2)	intron (NM_029397, intron 1 of 2)	1069.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	4.81051407048276	4.97272736489926	4.70290867815949	5.00084402169488	5.05411541989963	4.88963103227758	0.322392275558856	0.404739372138173	0.779791650050306
Merged-chr6-55017115-4	chr6	55016606	55017606	+	917.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20895.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	4.11177909197816	4.35276793016787	4.29818683948856	4.05089255461762	3.83200995492528	4.23516553063151	-0.624308110263502	0.207509581654291	0.59831527723439
Merged-chr1-131153159-4	chr1	131152648	131153648	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136070)	promoter-TSS (NM_001136070)	-59.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	4.9301966594536	4.70729144876426	4.44540470405708	4.7969895307366	4.63192805503154	4.72955995716262	-0.00545503266999362	0.989749817215554	0.997611022725407
Merged-chr11-49712807-4	chr11	49712292	49713292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-70.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	6.31143123189128	6.13149769538299	5.99216016793186	6.64506100484411	5.76899687464027	6.14552314160245	0.138675847831894	0.696362046068288	0.919442007192133
Merged-chr7-49046512-4	chr7	49046031	49047031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87458.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.74544861018879	6.08209738968905	5.71371843266964	5.17886648086458	5.4025596367986	5.64365922491541	-0.837194568032272	0.0160077279005274	0.138920632368282
Merged-chr9-103363382-2	chr9	103362900	103363900	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 2 of 4)	intron (NM_175833, intron 2 of 4)	1579.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	3.16551490662764	3.13134628459945	2.88153790203559	3.01876780391915	2.86246628336977	3.13827680748499	-0.294053061018491	0.672108230558268	0.910735325716773
Merged-chr2-35337661-4	chr2	35337150	35338150	+	962.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-641.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	7.43267301995319	7.42850747279302	7.40487934934863	7.6232535048837	7.90332825762627	7.48323565046515	0.391344096828482	0.101989766637787	0.42592499918641
Merged-chr4-16013906-4	chr4	16013405	16014405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145950)	promoter-TSS (NM_145950)	-17.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	7.35552558446188	7.80085324594341	7.30918785858716	7.21974004716643	7.18480098224747	6.92066006066473	-0.584287833052384	0.0298897760838766	0.208470676831117
Merged-chr13-99005424-2	chr13	99004924	99005924	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20859.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	4.49156781480946	4.64475570130105	4.83491365187099	4.62716772138249	4.58837785581312	4.8991499846832	0.109492061633891	0.795178154589344	0.951004454064308
Merged-chr10-68086407-2	chr10	68085907	68086907	+	561.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106837.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	3.82047195670257	3.87904429719433	3.87614418566364	3.75014233859234	3.70785422834902	3.79494121029636	-0.357278830728027	0.490697309307402	0.830146830531276
Merged-chr8-117322139-4	chr8	117321601	117322601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27069.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.05695126234716	3.89066970451175	4.05594356000579	4.04647598991272	3.80244211574881	4.07759560784479	-0.0823212904613989	0.870402524134854	0.970065609722504
Merged-chr11-96075102-2	chr11	96074602	96075602	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007506, intron 1 of 4)	intron (NM_007506, intron 1 of 4)	529.0	NM_001161419	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	6.73385851562934	6.70639332916398	6.45098910965079	6.7230265979862	6.98239265055742	6.52974726090333	0.1984107038808	0.478616298907505	0.823834402333981
Merged-chr14-48121327-3	chr14	48120829	48121829	+	881.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033602, intron 1 of 5)	CpG	460.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	4.37768607694237	4.34449971365947	4.46686188072718	3.78863411615321	3.25028829520374	3.68876648033773	-2.66247691080218	1.31464083454934e-05	0.000506898213907235
Merged-chr2-160700494-3	chr2	160699973	160700973	+	813.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 9 of 20)	intron (NM_009408, intron 9 of 20)	-30837.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	3.86688697146999	3.81023559442662	3.69832127446522	3.67549899133349	3.32440743856667	3.819465600595	-0.617888648272604	0.288420174489107	0.685876372615419
Merged-chr11-70486742-2	chr11	70486242	70487242	+	783.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18532.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	3.20228060954143	3.28881238225828	3.29873360910579	3.08340199160365	2.864890772504	2.95854092937351	-1.33973540563204	0.0473184868594137	0.275526707809524
Merged-chr9-97572638-3	chr9	97572123	97573123	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022319, intron 4 of 17)	intron (NM_022319, intron 4 of 17)	-202665.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	3.74430838751191	4.72617803440483	4.4466422997303	4.11261324558061	4.19952660539035	4.59130860478008	-0.150045656785411	0.79529852276317	0.951087765043391
Merged-chr15-86172365-2	chr15	86171865	86172865	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-13363.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	4.82438635221216	5.14169360111408	5.26313501134461	5.16151943281138	4.74530143849762	5.35489792808806	0.0347633453843564	0.933191911368912	0.985356091252617
Merged-chr5-31199780-2	chr5	31199280	31200280	+	816.099976	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153680)	TTS (NM_153680)	2262.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	4.34096269458526	4.09458246324585	4.83363437140703	4.49487765839783	4.25025327218749	4.72670394459336	0.119018096725607	0.813510296617658	0.955940138311315
Merged-chr10-57492260-4	chr10	57491758	57492758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008297, intron 1 of 11)	RLTR20D|LTR|ERVK	5873.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	3.9541867964791	3.85615538619409	3.92044147700603	3.67585952199335	3.84405462311148	3.94075056358543	-0.277899733404971	0.591186220653352	0.877431158663006
Merged-chr4-127021177-4	chr4	127020648	127021648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-153.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	7.81072613442216	7.98991704221291	7.42149424152426	7.81781474810437	7.77894601310989	7.52174948918348	-0.0776607147962394	0.763423476643504	0.941793063578371
Merged-chr15-59620107-4	chr15	59619628	59620628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28526.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.0696094209269	4.31640634534256	4.39535781339273	4.06546992736702	4.05551467303956	3.79432606287299	-0.790846687126692	0.117923234197226	0.458608472620406
Merged-chr17-31512701-2	chr17	31512201	31513201	+	832.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021322)	promoter-TSS (NM_021322)	-214.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	6.18652085988808	6.28075568158396	6.48684820767455	6.4856413131482	6.17228920945669	6.18254816007079	-0.0449356133826243	0.877347004658763	0.971560353131186
Merged-chr3-116163752-1	chr3	116163252	116164252	+	796.0	f0_balb.idr	Intergenic	Intergenic	-34064.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.81688968562261	5.03495240615246	4.82884167744822	4.7248121872114	4.96034970014923	4.73724889666438	-0.180294514573422	0.650167836183342	0.902544402889903
Merged-chr19-25045013-2	chr19	25044539	25045539	+	634.5	f0_balb.idr|f1_balb.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	45510.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.72716075544446	3.84683281399467	3.50042152638092	3.89826138960544	3.93652406287491	4.00088813555279	0.746860971632749	0.169941679948203	0.547190499463234
Merged-chr5-36830668-4	chr5	36830147	36831147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	2.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	6.54281000176371	7.21232208877585	6.83092795953453	6.72524485698524	6.76768855480605	6.56422124854911	-0.317753697802615	0.284891821881341	0.682500178939413
Merged-chr10-111011059-3	chr10	111010557	111011557	+	750.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-991.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	5.21846335763034	5.31533217202794	4.85541724981642	5.66189035225242	5.9122867311458	5.40608228696149	1.01943197537517	0.0072332158209562	0.0800399784242729
Merged-chr10-117148021-2	chr10	117147537	117148537	+	901.75	f0_balb.idr|f0_c57.idr	intron (NM_177798, intron 1 of 9)	CpG	437.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	7.4132369497423	7.02912877280371	7.29056729029799	7.50291895549604	7.2683077001969	7.34790324958147	0.181877597060309	0.467368346435464	0.817936383851132
Merged-chr4-3784201-2	chr4	3783701	3784701	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	51454.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.80789117856378	2.80674053499155	3.33639606290587	2.96988515515791	3.05868984952474	3.19643784661425	0.330766288285543	0.649685817438871	0.902262496828066
Merged-chr12-76368356-2	chr12	76367856	76368856	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028356, intron 1 of 2)	intron (NM_028356, intron 1 of 2)	1108.0	NM_001172104	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	3.7236982900483	3.60820958032247	3.5374579938628	3.66145733437866	3.63057826730734	3.60873277785876	0.0167875456558288	0.975698321703878	0.994540154302743
Merged-chr10-99986924-3	chr10	99986417	99987417	+	782.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28904.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.88943364234846	5.06082760077831	4.90916619297624	4.73723619814221	5.29252566080041	4.65021864560504	-0.0259014702410217	0.952164328071979	0.989068549972429
Merged-chr7-101352640-3	chr7	101352133	101353133	+	936.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	4564.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.67780030805058	2.47702308703548	2.63486373391069	2.50853430720671	2.20297493202681	2.58430721633619	-0.967571199076084	0.267478465885797	1
Merged-chr6-84032781-4	chr6	84032299	84033299	+	858.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	RLTR19-int|LTR|ERVK	13413.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	5.00893683225067	4.92223008553848	4.91491033207049	5.10598645890426	5.2129066894958	5.18847961061435	0.466047284808543	0.199024908090516	0.587441023062265
Merged-chr1-105992225-1	chr1	105991725	105992725	+	1000.0	f1_balb.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	1819.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	7.90642853042482	8.41427121320176	7.79749860457916	8.08619179017806	8.49494498335552	7.86242470823616	0.150876129262765	0.600224157876983	0.881521356518052
Merged-chr19-32787569-4	chr19	32787057	32788057	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	MTC|LTR|ERVL-MaLR	29980.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.4263859045936	5.38351326054108	5.80667173488028	5.92439230982905	5.5198112600173	6.53733172299113	0.907764346564073	0.0236637862944313	0.180368264402864
Merged-chr7-120883918-7	chr7	120883414	120884414	+	896.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 6 of 17)	B1_Mus2|SINE|Alu	32725.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.71179780243615	4.80192420632608	4.73019373218654	4.63258012861158	4.62274836687293	4.63700318498543	-0.282752428552938	0.479692569322416	0.824364286685341
Merged-chr3-142497438-4	chr3	142496947	142497947	+	847.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	513.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	6.22197816782081	6.38131373100956	6.30824981376043	6.39366211929147	6.51665129524573	6.24614057541448	0.153576103443711	0.578961478773942	0.872437129840066
Merged-chr14-67945970-2	chr14	67945470	67946470	+	997.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12398.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	3.64022386533447	3.72863108683063	3.46896881041012	3.53888132407652	3.60082470170762	3.70291936354092	-0.0379095454993061	0.946270089775348	0.98796006280508
Merged-chr7-81198078-2	chr7	81197578	81198578	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15726.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.47546458030222	2.43673125722918	2.75001240972242	2.45233773303708	2.22360965326502	2.70596641844053	-0.500891035977458	0.56346346585625	1
Merged-chr6-125010185-4	chr6	125009659	125010659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	-222.0	NM_001347452	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	7.14581952899667	6.60716551851882	6.946078047968	7.22714493467478	7.03254531067211	7.29908482174248	0.406053658482623	0.140553086148469	0.5008787328134
Merged-chr12-59129232-2	chr12	59128732	59129732	+	864.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	-516.0	NM_146034	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	3.81830152925985	3.41286610543416	3.62545851386718	3.53031661469019	3.53148811657534	3.69511431005538	-0.16574518454662	0.774810766797874	0.944509092162968
Merged-chr17-63422838-4	chr17	63422345	63423345	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	77735.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	4.55043301993475	4.54402381588953	4.4909517792663	4.57406708237889	4.46042840754835	4.38187728595674	-0.133563618910388	0.753278939537536	0.938549578325581
Merged-chr6-114255789-2	chr6	114255289	114256289	+	753.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26846.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	3.31026126739886	2.84369724790462	2.96292547396573	3.56818362549568	3.24402039671636	3.40349147408214	1.44918652907989	0.043997048056754	0.263910166693656
Merged-chr2-127137274-4	chr2	127136772	127137772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3318.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	5.61532130197229	5.58169151127209	5.89912507697111	5.82223279252571	5.79987710707383	6.15083350073225	0.410232583365631	0.20560412236792	0.596135891490343
Merged-chr4-95180597-3	chr4	95180096	95181096	+	897.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.16880688726865	2.09800198380407	2.58185496678138	2.00827238651744	1.99233415832522	2.22739161668139	-1.5990717076977	0.101009999524118	1
Merged-chr2-26493580-2	chr2	26493045	26494045	+	698.25	f0_balb.idr|f0_c57.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10277.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	7.11199821722976	6.82421239681778	6.7440440337501	7.00548779611671	7.0366933532768	7.18752232463919	0.2514203753064	0.330034496700427	0.721658583556809
Merged-chr11-75168206-4	chr11	75167678	75168678	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-26.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.70790206810128	6.77775840417911	7.15566815894124	7.14938608100283	6.70930695723568	6.87759177305618	0.0560609134504039	0.84366331807419	0.963591080139423
Merged-chr4-122870283-2	chr4	122869819	122870819	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 3 of 12)	intron (NM_007598, intron 3 of 12)	15757.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	4.09323731127882	4.23364423076939	4.20685310983855	4.26324171544592	4.31466817890076	4.52828856168777	0.507407072650188	0.269480897302052	0.666576488680077
Merged-chr13-104228871-4	chr13	104228382	104229382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021790)	promoter-TSS (NM_021790)	-38.0	NM_172807	238831.0	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	6.58455056409859	7.34703673146533	7.22304827797151	7.29476108612421	7.83208190333158	7.19625114287915	0.571851003161038	0.0784032719979275	0.369765882015731
Merged-chr3-96026839-3	chr3	96026308	96027308	+	734.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 13 of 14)	RMER6A|LTR|ERVK	-30969.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	3.65219314823157	3.80786844117799	3.91511462462189	3.94509695735992	3.54041065848571	3.88765831214085	0.0160990371847541	0.976789906161581	0.99476201281709
Merged-chr4-150278007-1	chr4	150277507	150278507	+	836.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3909.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.4082225249204	2.38453000211041	2.50392441207503	2.81816668750436	2.96004535243224	2.95787407054019	3.14613048613973	0.000451289580857127	0.00969555988741539
Merged-chr17-78419369-4	chr17	78418843	78419843	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.86727660622499	5.01408506070861	5.42655557917262	5.24595786250894	5.30533953531687	4.90128300415031	0.123789234212246	0.758439388480868	0.940145765228317
Merged-chr19-53329436-4	chr19	53328940	53329940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	27.0	NM_001360345	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.11505139257838	6.11775728489856	6.26566054206884	6.32918852097311	5.6050012381417	5.98626293109324	-0.274035826773914	0.415859435276546	0.786747452594524
Merged-chr2-128782834-2	chr2	128782333	128783333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 14 of 18)	intron (NM_008587, intron 14 of 18)	-35470.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.88051166800374	4.64541104445042	5.22274109285005	4.9047039296595	4.5465846952456	4.66913607742775	-0.482629250119498	0.265229105429889	0.663007441003202
Merged-chr11-117958419-4	chr11	117957945	117958945	+	979.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10921.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	4.05576633681906	3.58063647557754	3.66841394444632	3.64735922333606	3.54772788305144	3.45522598970896	-0.79883155893358	0.173183469833586	0.55193311543606
Merged-chr4-102518017-3	chr4	102517536	102518536	+	942.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52024.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.57524370059447	3.51876979164397	3.93285266195262	5.57871244958607	5.72032963935549	5.99311752481884	9.02258411091731	1.52622088542854e-13	3.38987167662818e-11
Merged-chr11-71144848-4	chr11	71144354	71145354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004142)	promoter-TSS (NM_001004142)	-150.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	5.2183284002014	5.3478901740365	5.44223797734759	5.45842105743326	5.18526831335958	5.50469281953645	0.0913758869214613	0.794407951763252	0.950711250903359
Merged-chr3-19630269-4	chr3	19629765	19630765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14195.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	5.0527972849848	4.88562414513253	5.3658330622	5.21953288589982	5.1156499033122	5.04985179842653	0.0601926789404943	0.874378573350475	0.970754540400126
Merged-chr1-131963041-7	chr1	131962543	131963543	+	984.68573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177628, exon 1 of 5)	5' UTR (NM_001177628, exon 1 of 5)	128.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	7.52784517816953	7.74401332555677	7.51628387899926	7.23156241712311	7.1479224619081	7.22624986403449	-0.600192855581151	0.00963989804944923	0.0980103417520249
Merged-chr8-41240802-2	chr8	41240302	41241302	+	844.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	1043.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	5.08581449428123	5.03108307164534	5.11839789778344	5.7196483809681	5.8333495289276	5.35456515589162	1.1523216402186	0.00110390223946241	0.0194316686145944
Merged-chr5-124860198-2	chr5	124859696	124860696	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144819, intron 1 of 3)	L3|LINE|CR1	2025.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	2.42049084442558	2.315821572055	2.56916099032597	2.34565530535703	2.39820674290167	2.58139822823116	0.0428838572030606	0.95822919322791	1
Merged-chr6-125596386-3	chr6	125595899	125596899	+	823.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 10 of 51)	CT-rich|Low_complexity|Low_complexity	43451.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	2.77755634021426	2.6708237959295	2.6498233903318	2.79879871234745	2.67815640609126	2.96745981532443	0.583596892488373	0.430454881715031	0.79626959019857
Merged-chr13-6029894-1	chr13	6029394	6030394	+	629.0	f0_balb.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	168405.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.08600689172969	3.12313726971278	3.28279222438019	3.48742735421755	2.9226042035011	3.05972335829143	0.0720490092345339	0.917413308329556	0.981615488433117
Merged-chr10-94829583-4	chr10	94829091	94830091	+	824.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114987.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.26727945488032	4.20249866581125	4.10286623402574	4.20975451823847	4.33580228231955	4.02117420779362	0.0249571182653389	0.958292631357282	0.990000537228272
Merged-chr6-124898519-4	chr6	124898041	124899041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10341.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	4.56554649486078	3.70228913802531	4.00822599813191	4.12394214573541	3.96306137877513	3.9768281495657	-0.361279461398608	0.527148627264083	0.849836645417483
Merged-chr4-137365837-4	chr4	137365347	137366347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8088.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	6.88318278600257	6.93122342669279	6.58141579680588	6.74191089814016	6.88468382770023	7.22772099984101	0.222857598305892	0.425607947436589	0.793193856506818
Merged-chr10-128488129-2	chr10	128487629	128488629	+	993.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001114097, exon 27 of 28)	exon (NM_001114097, exon 27 of 28)	4880.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	3.30686252807849	3.21953756561227	3.27728848557526	3.21823487254565	3.04234767210296	3.70555215110355	0.305560666248408	0.648841768876331	0.901963404198945
Merged-chr17-36145257-4	chr17	36144770	36145770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033517, intron 1 of 3)	CpG	252.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	4.62728206264014	4.62785336392547	4.31637250736828	4.85953485527862	4.43387558966632	4.18323753631499	-0.0225457859790734	0.962784736791416	0.990972235433849
Merged-chr2-11712918-4	chr2	11712411	11713411	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	7199.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	3.90205399831702	3.93692332122981	3.93998553535736	3.60362450042283	3.69465323714946	4.26923609470965	-0.138397362383916	0.806464529430147	0.954175502507197
Merged-chr1-180265076-4	chr1	180264574	180265574	+	997.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8774.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	5.46647425379017	4.96536492151618	5.10942920104821	4.96530019213055	5.2768657894864	5.10491957627002	-0.153419406547193	0.695057176379	0.919230570201314
Merged-chr7-110616452-3	chr7	110615945	110616945	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-1525.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	5.97038473039482	5.55920374618185	5.71296475275857	5.58430599322762	5.88696037711653	5.99184130314377	0.1226320317268	0.714364405630753	0.925873245006649
Merged-chr10-77268254-2	chr10	77267754	77268754	+	747.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 8 of 8)	intron (NM_030262, intron 8 of 8)	8954.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	3.05233423625145	3.20372669600622	3.33761482764059	3.24218155482174	2.82777890952381	3.30075286087556	-0.27025345989317	0.698454964500112	0.920345237083715
Merged-chr4-109550777-1	chr4	109550277	109551277	+	796.5	f0_balb.idr	Intergenic	Intergenic	-19480.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	4.21373983661169	4.18783761244857	4.20348501119195	4.04373789322768	3.93396850968127	4.22639627293107	-0.394655969676823	0.40930487228571	0.782658446423422
Merged-chr13-30612471-6	chr13	30611941	30612941	+	918.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2602.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.61883298438861	4.57824132719862	4.76043702401303	4.47654635130212	4.69321027203905	4.59294030181776	-0.128559367574161	0.757361443256596	0.939861209437025
Merged-chr7-142393922-3	chr7	142393440	142394440	+	828.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6070.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.6099078729667	7.39302915877732	7.49379170402324	7.67341959910366	8.00054258677407	7.75646190373708	0.464308902629512	0.0483134877597474	0.278757623252945
Merged-chr6-97303271-2	chr6	97302771	97303771	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 18 of 23)	intron (NM_145148, intron 18 of 23)	-50491.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.77630324053142	2.91319466532098	3.23971775848205	3.02170838371107	3.01664599419183	3.25699159499359	0.517844409965314	0.464159800742715	0.816188315062566
Merged-chr12-102701604-2	chr12	102701104	102702104	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	3265.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	2.77268355137796	2.89918198141526	3.23739924996985	3.01595338246277	3.01742994782967	2.90825819193305	0.0255750457351214	0.971429594873811	0.993775449429658
Merged-chr15-78334633-4	chr15	78334236	78335236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	8746.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	4.04164965322981	3.47672605831917	3.77107920845847	3.53095793165867	3.56983193915106	3.57638062026515	-0.769346114727585	0.190340830419248	0.576601442268746
Merged-chr2-90558280-2	chr2	90557780	90558780	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	22367.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.03182377275961	6.83433983054133	7.20172090661781	7.13708601816379	7.36943276865883	7.53907521220458	0.497055718364429	0.0557290481085511	0.303877246980122
Merged-chr6-83444103-3	chr6	83443625	83444625	+	749.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028382, intron 2 of 2)	intron (NR_028382, intron 2 of 2)	2370.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	4.52489799918307	4.17828267428632	4.50230481394909	4.33672572367265	4.19827116649908	4.60707979278166	-0.0684752991212696	0.883910881365671	0.973466734537782
Merged-chr3-69655210-4	chr3	69654704	69655704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	-56244.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	6.86832714950469	6.85875382036527	6.90447109776163	7.07617618737878	7.18195693742218	7.14687173640462	0.399021380120283	0.0925454088713993	0.405215908567243
Merged-chr8-79374591-4	chr8	79374099	79375099	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	24869.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	6.73043418555635	7.0125296127292	7.07106414897853	6.68719616023228	6.9774855583083	7.05352412262001	-0.0438835874328738	0.87004086118048	0.96999169248741
Merged-chr9-121372197-3	chr9	121371697	121372697	+	687.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	5239.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.93513869953523	4.09685446338737	4.1201092314652	4.11853949042266	4.05505712990606	4.55748949928341	0.561887765460648	0.262901396037141	0.660891219379409
Merged-chr1-36571031-2	chr1	36570531	36571531	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-12650.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	6.71248932091768	6.60194970376953	7.16804613517513	6.82893657983607	7.25176600966233	7.01716424884676	0.318714104742775	0.2749493751329	0.672331257228241
Merged-chr7-80103673-3	chr7	80103196	80104196	+	694.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	11654.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	3.34156598287852	3.2252361648447	3.48253142391415	2.97169905307931	2.78881258280387	3.11854514428532	-1.81015526693275	0.0101225561013926	0.101283988466171
Merged-chr6-31201386-1	chr6	31200886	31201886	+	540.0	f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	L1MC4|LINE|L1	17088.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	2.57421163391967	2.727880069995	2.6156844286467	2.72036529669075	2.83786045741741	2.81530466081733	0.803241928688066	0.280962009485394	1
Merged-chr16-31755208-4	chr16	31754704	31755704	+	778.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	854.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	5.6983372629419	5.80377633930065	5.40436344188427	5.46662554806553	5.52776053680393	5.52907719254692	-0.281837748951018	0.39654915484683	0.773665550809984
Merged-chr12-76615463-4	chr12	76614972	76615972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	ORR1D2-int|LTR|ERVL-MaLR	-67547.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.88502474037829	6.80730201037493	7.04388702316511	6.81747589370828	7.01742285776229	7.12606927806968	0.124061968855203	0.625578445757127	0.892513881101067
Merged-chr5-122548825-4	chr5	122548315	122549315	+	858.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46590.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	5.33354580114632	5.60546255681544	5.61756913973562	5.11246313085701	5.11279248190768	5.54824126575104	-0.513023157720621	0.159086807553168	0.531106366670038
Merged-chr1-170173676-2	chr1	170173176	170174176	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	1288.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	4.4180837829659	4.11603381382172	3.93029420358431	4.54259482991426	4.35728775800822	4.11077043777353	0.464083799307857	0.359199595420442	0.745440547165336
Merged-chr6-53573242-4	chr6	53572714	53573714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-160.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	7.02206602513491	6.9435020566088	6.40116393687929	7.03606817351415	7.21425205126578	6.85336464974948	0.335620922754707	0.253097312489605	0.650473226391001
Merged-chr19-32225336-3	chr19	32224830	32225830	+	952.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-14317.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.46389585255116	6.46430080687099	6.10777022595834	5.48039446179686	5.66514438654908	5.96504663221411	-1.13412864570204	0.000382193850972958	0.00849852441608547
Merged-chr14-106668377-4	chr14	106667876	106668876	+	919.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-181856.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.75826086162101	3.97064011218333	3.73896508657442	3.56434570230813	4.10735064417389	3.80981105605238	0.0802121333224305	0.887617549290055	0.973836995667151
Merged-chr12-76534963-1	chr12	76534463	76535463	+	939.0	f0_balb.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	1403.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	6.22143716866664	6.49797383559498	6.71683028691596	6.47760396734164	6.76770526377756	6.87565820477244	0.365050939773476	0.212508894750362	0.605065703339315
Merged-chr18-53224397-3	chr18	53223885	53224885	+	623.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21277.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.39573752990844	3.34774719032181	3.67069975612681	4.24893108754515	4.26287804625416	3.95582225800579	2.38440912209322	3.07264942559676e-05	0.00105081745320783
Merged-chr5-140406811-2	chr5	140406311	140407311	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12494.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	3.04822890849805	3.17397488391702	3.06193876974601	2.92571557261886	2.93723094774849	3.01528266122307	-0.649791213849967	0.330977624599828	0.722265570094478
Merged-chr10-86879379-3	chr10	86878878	86879878	+	849.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	100373.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.45546231606122	5.27833302182276	5.38881805220238	5.2429375574365	5.20048899452004	5.64256679314223	-0.0228415165397839	0.949157150427053	0.988169196639905
Merged-chr1-52366517-3	chr1	52366022	52367022	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133290.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	3.25409126244096	3.58057445388846	3.43831186110987	3.02333403140244	2.80297761040569	3.23439820561757	-1.81434749778345	0.010920104659045	0.106898831584684
Merged-chr5-145281064-2	chr5	145280564	145281564	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2279.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	7.15485168276191	7.81814796563526	7.60996168118463	7.40177503667625	7.26559611144264	7.34544483013496	-0.324891185561596	0.231707401379808	0.62778514063401
Merged-chr10-41868600-2	chr10	41868100	41869100	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-18839.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.0674419018113	3.99267771748208	4.58664099590372	4.14067333592952	4.27645645634435	4.33973764596064	0.0621023172057895	0.901787856174359	0.977356766938531
Merged-chr5-121220190-4	chr5	121219682	121220682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181421)	promoter-TSS (NM_181421)	-37.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	5.00174656759132	4.80545383474316	5.1576227299984	5.00471418330283	4.82879633412557	4.9180366735027	-0.155339912516872	0.688173963140668	0.917193226920892
Merged-chr3-63975429-2	chr3	63974930	63975930	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	-713.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	2.79703505757502	3.15952122454311	2.85694251829003	2.99654145207081	2.99295198273939	3.22612618314117	0.540757886511493	0.449210588289383	0.807594795348397
Merged-chr2-130501825-3	chr2	130501306	130502306	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	51528.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	4.84690782375029	4.92843045316127	5.2707117751627	5.4001792815954	5.45075032346155	5.33415205467716	0.78933747946009	0.0308432447040878	0.212543449961301
Merged-chr1-93803083-2	chr1	93802583	93803583	+	711.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-882.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	6.21262622754786	6.22934672152578	6.4442923864869	6.24996370591519	6.42472708666341	6.35746577206182	0.094586782792923	0.733298429153468	0.932039456283818
Merged-chr5-99237347-4	chr5	99236822	99237822	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	15605.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.52585009094833	5.87126527864042	6.0486259991549	5.79150103983595	5.91448878049237	5.95568812881718	0.113618540805484	0.727169414552695	0.930115108449853
Merged-chr10-120363556-3	chr10	120363046	120364046	+	743.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010441, exon 5 of 5)	3' UTR (NM_010441, exon 5 of 5)	-25977.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	3.67673707775427	3.37802647940062	3.51066488613609	3.77203889797644	3.70070185895414	3.52601163769145	0.507302785399495	0.378251667802735	0.760580091697397
Merged-chr5-64795938-4	chr5	64795454	64796454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7569.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.00550069132847	7.05634420342098	6.89196485347929	6.75715780314191	7.05530335821989	7.07228172294664	-0.0324089553070672	0.898299872640548	0.976312272366525
Merged-chr6-93127090-3	chr6	93126575	93127575	+	847.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186493.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	4.3475357934153	4.82998455883177	4.96488077460527	3.96034236560278	3.76131382075203	4.04342292127874	-2.25565590541114	1.23192973768931e-05	0.000479449998192946
Merged-chr3-16005617-3	chr3	16005120	16006120	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	Lx2|LINE|L1	712.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	6.11323877272672	6.44050145262362	6.66792851408703	6.51661083898569	6.41699184852357	6.44361133732379	0.0673265959867113	0.818381658739242	0.956943376117853
Merged-chr15-101247766-1	chr15	101247266	101248266	+	1000.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-19080.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.99230954942	5.82540174511053	5.97108645651074	6.40461375462605	6.56155269804521	6.61312669404328	1.00232805471549	0.000363081125214339	0.00814100088031115
Merged-chr12-35573998-4	chr12	35573510	35574510	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39021.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.90078984030139	4.77958129637104	4.48362890884607	4.22506543398232	4.03380917085911	4.12272577213199	-1.60256746394611	0.000509877998948042	0.0106410655973084
Merged-chr14-122649643-4	chr14	122649117	122650117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115289.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	6.36595801873636	6.50307198922009	6.28125344012241	6.81639536305663	7.01391133546095	6.44342204576738	0.636088011107005	0.0284101074607019	0.201822609202602
Merged-chr12-102418353-2	chr12	102417853	102418853	+	618.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	RLTR25B|LTR|ERVK	21460.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.75884929411013	6.89961964285123	6.65420796835237	6.50703369650729	6.8406396240136	6.36314919371454	-0.281264458362486	0.320962941635899	0.714674849411006
Merged-chr3-131869516-4	chr3	131869010	131870010	+	698.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215782.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.84698755445288	4.1274349278568	4.24893411972864	4.30798236038488	3.96565288744036	4.69982571165359	0.731161037413679	0.169760290194307	0.546860790804798
Merged-chr10-13513514-4	chr10	13513019	13514019	+	954.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025799, intron 6 of 6)	intron (NM_025799, intron 6 of 6)	12491.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	4.35455201528042	4.38999090060867	4.10704975375479	4.37521581224616	4.19906144261009	4.17664182675801	-0.119442429312086	0.798006603272023	0.951930937621884
Merged-chr17-47610973-3	chr17	47610486	47611486	+	938.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	506.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	7.01009082200607	7.14585985956166	6.96814011950904	7.23923943585265	7.45805650263965	6.78487478302259	0.23870946432601	0.395348102998444	0.772699244927409
Merged-chr15-78245657-5	chr15	78245120	78246120	+	830.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	809.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.90966013062383	6.8385649649255	7.41333527492394	7.03517308489288	7.1133016786147	7.26191838334297	0.101737051970088	0.714317501426745	0.925866575156031
Merged-chr5-149243169-1	chr5	149242669	149243669	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-21835.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.13530190237056	5.19752601896194	5.61491117690391	5.49337262008835	5.16607026093425	5.97002926886127	0.480688081499425	0.237024215097747	0.633445447752582
Merged-chr5-113796501-2	chr5	113796001	113797001	+	834.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146162, intron 1 of 1)	intron (NM_146162, intron 1 of 1)	3851.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	2.45028036606724	2.34371805698814	2.52841821978955	2.3040083302618	2.17286697133084	2.54061963430548	-0.631976165620196	0.463257131426445	1
Merged-chr15-93310376-2	chr15	93309876	93310876	+	664.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_024189, intron 2 of 3)	MTC|LTR|ERVL-MaLR	26559.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	2.29501566951574	2.29892392940599	2.45491137293635	2.39360678350709	2.22757206814423	2.59029232967711	0.369880351222221	0.661305258590102	1
Merged-chr2-91088033-4	chr2	91087533	91088533	+	789.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8645.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	6.38397818202155	6.31359900786775	6.89836855520731	6.36950248067166	6.56822360073219	6.64050318826526	-0.0286963198307895	0.924695151965152	0.983046087272309
Merged-chr4-145250713-2	chr4	145250213	145251213	+	833.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3843.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	2.5353602280276	2.49755398539228	2.498015619632	2.56319518022885	2.51107361567536	2.8761348950206	0.813375320310683	0.303477958581938	1
Merged-chr18-60765873-2	chr18	60765373	60766373	+	694.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-8723.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	4.57364414505815	4.95774430008365	4.49514582900315	4.33550500992957	3.90098585830015	4.38821644491054	-1.23508595347431	0.0117542484945405	0.112561573107806
Merged-chr10-58497997-4	chr10	58497524	58498524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	87.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	7.55202265812517	7.80775955273978	7.49675306735195	7.64632106040754	7.6412012402549	7.47039734623071	-0.0567585057144951	0.808706849301855	0.954721853010197
Merged-chr4-32249910-4	chr4	32249434	32250434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167501.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	7.99393688524784	7.96082074524591	7.66465047211021	7.91616126367571	8.02092644542536	7.70242433878815	0.00710357700173677	0.975952934777237	0.994572735300192
Merged-chr2-70989859-2	chr2	70989359	70990359	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28515.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.50756325033262	6.20047172666935	6.12834202467381	6.32665688735678	6.4202029567926	6.00072417691099	-0.0382992785125125	0.900193962872767	0.976728292075907
Merged-chr15-78864651-1	chr15	78864151	78865151	+	720.333313	f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9122.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	7.93700277590667	7.68499648665007	7.63968996217849	8.07829337246401	8.13230499345602	7.50305150678871	0.257141819297719	0.335548974675646	0.725694211280635
Merged-chr11-88949649-1	chr11	88949149	88950149	+	607.0	f1_balb.idr	intron (NM_029023, intron 2 of 12)	B4A|SINE|B4	5793.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	5.23473805452462	5.75836422917995	5.54958609986597	5.52106735224386	5.5880133818094	5.74400878750846	0.152579039106816	0.663569031100573	0.907278570087524
Merged-chr6-38065640-6	chr6	38064997	38065997	+	757.597229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080467, intron 14 of 20)	intron (NM_080467, intron 14 of 20)	-18501.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	3.95723763786542	4.02705761248726	4.11059823774122	3.8048424400355	3.79305900395742	3.94512857576242	-0.571889949708453	0.256080569923011	0.653115451305932
Merged-chr16-44773857-4	chr16	44773362	44774362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	8126.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.94135543274526	4.80711490175205	5.19214470421171	4.38342956269474	4.76670158200275	4.75094838020547	-0.756429382305687	0.0753311000510526	0.361464170062164
Merged-chr14-32169063-3	chr14	32168563	32169563	+	925.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	3274.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	7.11924868355247	7.01054600207833	7.19251439326795	7.26595189179775	7.39348278851287	6.97625751342186	0.192155882203212	0.446665288522823	0.806100108763013
Merged-chr2-165874996-4	chr2	165874485	165875485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3452.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.47585747461024	6.53403094079632	6.40434720816847	6.40044618840997	6.57612022806749	6.50064795818563	0.0337231001188104	0.898608979120999	0.976398924551551
Merged-chr17-35078046-4	chr17	35077531	35078531	+	951.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027366, intron 2 of 2)	intron (NM_027366, intron 2 of 2)	1089.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	5.34431127735683	5.43746665268182	5.27167731236518	5.46849555347815	5.46068882356193	5.30310782722025	0.118377399490337	0.725852767711825	0.929724409589692
Merged-chr12-3812813-4	chr12	3812314	3813314	+	942.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	5654.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.52202445156099	5.53967947925793	5.46194113504559	6.17796113329929	6.09368892818012	5.32523949609445	0.762191320820328	0.0406571721815867	0.251457502959084
Merged-chr5-66015728-4	chr5	66015242	66016242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001127382)	TTS (NM_001127382)	-11457.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	7.52532853744426	7.20078832974694	7.42288647772169	7.41470378306859	7.45353588777661	7.10383670759259	-0.0703324116362104	0.780113328234374	0.945949149660645
Merged-chr4-136028274-3	chr4	136027678	136028678	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6529.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	4.52428923054046	4.83039527724929	5.0208562208775	4.73533099416088	4.83957436318129	4.98503223185285	0.12276859173004	0.767078250740032	0.942573703853445
Merged-chr14-54771183-4	chr14	54770666	54771666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	10720.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	6.31284079434215	6.07968512456291	6.28931877143566	7.02925283429701	7.43852116799841	6.73648444522852	1.39250505691999	3.56588333838092e-06	0.000164838900455555
Merged-chr7-36696671-3	chr7	36696265	36697265	+	855.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1353.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.29233060771362	3.43258459287146	3.75263776256649	4.11396231452359	4.13993606562232	4.36607666663193	2.38550886850112	4.37564611830451e-05	0.00141342919395974
Merged-chr14-33171952-3	chr14	33171421	33172421	+	662.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	13145.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.57275757476054	3.40591352602275	3.42197026900969	3.44038170699237	3.33372211444852	3.70216645554831	0.0795721738266993	0.893711879375009	0.975265071347118
Merged-chr15-25825903-1	chr15	25825403	25826403	+	670.0	f0_balb.idr	Intergenic	Intergenic	-17395.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.04538934526385	3.82896637991679	3.84049451957682	4.33735368159744	4.39250188125768	3.80000950816225	0.865207314828449	0.107002984796955	0.436553290462615
Merged-chr17-36024297-3	chr17	36023819	36024819	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3759.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	6.67382714505406	6.60847562124587	6.67808748566892	6.5041484610045	6.64702918304238	6.32217372818222	-0.228138675098689	0.393640620279734	0.771827620525394
Merged-chr2-6591907-2	chr2	6591407	6592407	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 10 of 15)	intron (NM_001110232, intron 10 of 15)	129755.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.51470820125553	2.55652053280752	3.02344212835006	2.711361909853	2.54406656446562	2.87189436569092	-0.00687919005609438	0.993178526529247	0.998651348330892
Merged-chr8-53496408-4	chr8	53495896	53496896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15306.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	4.52244534535926	4.56171739736855	4.43874048444682	4.22612796919725	4.35313917123743	4.41977394365015	-0.46007728253991	0.292270346530751	0.68951252554772
Merged-chr8-71294853-1	chr8	71294353	71295353	+	575.0	f1_balb.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	22139.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.09377115977765	7.2461979650801	7.22134341884368	7.22621352896623	7.33041984770403	7.13199767367028	0.0751211442696228	0.750648102344132	0.937588367655538
Merged-chr4-41311326-4	chr4	41310823	41311823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	3578.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	6.72315211366159	6.59043262200856	6.83537017181409	6.22332725712271	6.75653401470325	6.92099721492844	-0.0811966300861075	0.788696985923753	0.94895503373255
Merged-chr15-58743680-2	chr15	58743180	58744180	+	905.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79747.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.51345814429608	4.52593569622931	4.42790518671344	4.58101213509119	4.50084057008683	4.2634126876266	-0.0750915020107196	0.863662914204398	0.968269312109804
Merged-chr4-63817749-4	chr4	63817259	63818259	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	43525.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	3.99522284474556	3.65591560766731	3.69840913829999	3.79685109406645	3.87025195708458	3.60168680891145	-0.0912323983431222	0.869579509860962	0.969821240077951
Merged-chr6-83616669-4	chr6	83616179	83617179	+	921.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39437.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	3.27634851967062	3.46274857665079	3.18477037968743	3.25415825335832	2.81695906014676	3.07512352542719	-1.1106865964802	0.114343780483559	0.451630551943065
Merged-chr2-90744598-3	chr2	90744144	90745144	+	848.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-726.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	7.61891307772632	7.68772188067925	7.07398028779109	7.67852732971475	7.92507003312327	7.31503440236952	0.253299598143912	0.386523690942684	0.767131316757601
Merged-chr5-35236708-2	chr5	35236208	35237208	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41858.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	3.49937537395513	3.54017529801548	3.75703721769392	4.34269903327761	4.04396978670707	3.93351076235398	1.6898580832326	0.00196408836291784	0.0305301446855348
Merged-chr14-76093647-1	chr14	76093147	76094147	+	542.0	f1_balb.idr	intron (NM_026177, intron 7 of 7)	B2_Mm2|SINE|B2	17168.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	2.73936702582747	2.92762239391387	2.85503787054116	2.67028510151332	2.58817550016077	2.4763401357619	-1.4485733962116	0.0679733426058412	1
Merged-chr12-36317242-2	chr12	36316772	36317772	+	804.5	f0_balb.idr|f1_balb.idr	exon (NM_025312, exon 2 of 2)	exon (NM_025312, exon 2 of 2)	3103.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	2.30345413016371	2.36633774669388	2.21989030748037	2.36183766961534	2.23215269515095	2.55413533198995	0.544629368464086	0.525978566822358	1
Merged-chr5-34518109-4	chr5	34517607	34518607	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4128.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	2.87046867395931	2.79429578895484	2.97340077545292	3.05236619886357	2.77279833229975	3.04580670348755	0.389274442631589	0.580616062949993	0.872906829146514
Merged-chr3-22076723-4	chr3	22076215	22077215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	63.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.72058874967399	7.39700105945843	7.57333048127553	7.83811679509058	7.22754544728245	7.49218011548378	-0.0396980723038321	0.88323941899372	0.973347392063704
Merged-chr19-46531837-1	chr19	46531337	46532337	+	557.0	f0_balb.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30189.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	2.72542714131136	2.58987520419048	2.68466218596183	2.50187138280415	2.23802383773717	2.29702227602037	-2.10907233983992	0.01940911732981	1
Merged-chr11-97701742-3	chr11	97701273	97702273	+	834.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1276.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	2.40495574252307	2.24038217621609	2.44589031098895	2.28113025084462	2.31364348010733	2.12012014049758	-0.80652985263671	0.367006147536572	1
Merged-chr2-148877595-4	chr2	148877078	148878078	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2066.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	4.85280666210886	4.86572161979917	5.01299160401362	4.76160688961303	4.68091736211129	5.34734508103051	0.0933130320634287	0.826764857733527	0.959278302444461
Merged-chr8-25970278-3	chr8	25969846	25970846	+	721.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 4 of 17)	RSINE1|SINE|B4	6398.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	7.55093373735881	7.57465683781993	7.19002294882044	7.71044285461624	7.97781950098628	7.20874104478573	0.327467796780176	0.258553773802397	0.656126823341666
Merged-chr3-36613419-4	chr3	36612908	36613908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027810)	promoter-TSS (NM_027810)	-19.0	NM_027810	71492.0	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	5.0808880495994	4.98561994652889	4.73768540954124	5.00209806580147	4.66639134796276	4.49567262262121	-0.459797002900136	0.278017159086195	0.675349758662575
Merged-chr8-88242076-3	chr8	88241603	88242603	+	800.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	-30300.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.30747336304864	3.40150549104607	3.26292976575204	3.61469306630274	3.6650013849251	3.82150173981107	1.36005202435725	0.0212804732772732	0.168222080605676
Merged-chr7-128462606-2	chr7	128462106	128463106	+	824.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347641)	promoter-TSS (NM_001347641)	-933.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	5.67012467092811	5.97881487869646	5.42184591882686	5.35875536843625	5.88869254700727	5.32036782847062	-0.283239909915334	0.460290962574649	0.814423425136867
Merged-chr13-19828272-4	chr13	19827763	19828763	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4006.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.04770311985327	3.13833547993162	3.06871502286633	2.98721188256459	3.04528164457487	3.36201439075533	0.21100509439089	0.751552138190706	0.937886504040509
Merged-chr1-9893318-4	chr1	9892818	9893818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 17 of 17)	intron (NM_133220, intron 17 of 17)	-15320.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	6.39340494899425	5.91165118852073	6.3337928984758	6.0865223076654	6.12239894239564	6.25931621943377	-0.121493205455172	0.692052075804371	0.918541547639936
Merged-chr11-114987513-1	chr11	114987013	114988013	+	706.75	f0_c57.idr	exon (NM_145437, exon 2 of 4)	exon (NM_145437, exon 2 of 4)	2373.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	6.23356257993194	5.98195453111162	6.3382526806774	6.14660137673223	6.31204152165143	6.15872442989002	0.0474042512947135	0.871199612285366	0.970222087171093
Merged-chr13-111788411-4	chr13	111787974	111788974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	20519.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	5.20950020797736	5.03168332890307	4.82775042587768	5.53263615551726	4.91434903827331	4.76909862798161	0.175212420977619	0.687724039466258	0.917193226920892
Merged-chr10-37135764-1	chr10	37135264	37136264	+	550.0	f1_balb.idr	3' UTR (NM_008538, exon 2 of 2)	3' UTR (NM_008538, exon 2 of 2)	3162.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.41447989532771	5.402515409847	5.15180487268927	5.11093348911412	5.44191693351459	5.18191672849006	-0.146212049673573	0.686806016846951	0.91687527626078
Merged-chr5-72184146-4	chr5	72183645	72184645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15956.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	5.90312777626978	5.97306937116288	6.17410249834664	5.8409594491833	6.12928771928905	6.47026795850105	0.255013452557787	0.429854578627146	0.795890960801237
Merged-chr7-81850906-3	chr7	81850414	81851414	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-8087.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	6.44543305593389	6.52647899967938	6.75151951548667	6.03061989431073	6.36326671915165	6.6452122102382	-0.341808253153941	0.260937537810951	0.658521360261207
Merged-chr16-81454710-4	chr16	81454213	81455213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113208, intron 5 of 17)	intron (NM_001113208, intron 5 of 17)	254016.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	4.21318502161715	4.24748326907705	4.06121070919545	3.9805222701946	4.43975681949274	4.27272306426723	0.191878157237412	0.695420316003556	0.919289041383579
Merged-chr13-23531045-4	chr13	23530532	23531532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-12.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	8.31156139250519	8.41426840058744	8.39192594038973	8.35088286799542	8.74969981230125	8.52992135830987	0.25689088084116	0.242217267212363	0.639326946903326
Merged-chr16-26035723-4	chr16	26035202	26036202	+	933.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70082.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	5.11882054991532	5.44043947864906	5.26371721484904	4.96575525133423	5.23392882873159	5.47375039984316	-0.0996391068651314	0.791397715421978	0.949737938863565
Merged-chr4-53225768-2	chr4	53225268	53226268	+	838.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20428.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.27094785694268	3.85377151810446	4.09205354234122	3.94630212086575	4.11023941620415	3.96588062297449	-0.203021174678531	0.690631180765478	0.917915728386653
Merged-chr10-128298421-4	chr10	128297914	128298914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-330.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	7.61514792629005	7.69336928815396	7.44330007995869	7.70171354448428	7.93016734501879	7.57260792505609	0.22793792895831	0.337644932524224	0.727543075805154
Merged-chr18-49982681-4	chr18	49982184	49983184	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	3257.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.48982119712794	4.46600196527299	4.12258104524682	4.22624714433146	4.64656284017283	4.24371213200318	0.0542979736985532	0.911071650555753	0.980017061055921
Merged-chr19-45843610-4	chr19	45843125	45844125	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198296, intron 24 of 25)	intron (NM_198296, intron 24 of 25)	-27562.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	4.61603193206591	4.98726235364301	4.65664384836155	4.71301071935653	5.24538847900264	4.76584791907962	0.385196392434647	0.379180276158987	0.761674249055766
Merged-chr8-115423242-4	chr8	115422741	115423741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	283653.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.65022972140683	6.89629229149811	6.35193466872486	6.53667524246788	6.59774418344681	6.22001673151391	-0.304965250264959	0.308757645409711	0.704715442156331
Merged-chr8-54562346-4	chr8	54561846	54562846	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	12015.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	3.18034385344801	3.41996562140817	3.18526209521534	3.28780987424886	3.3616567783409	3.53275939912044	0.484948800409847	0.437622982933039	0.800064171761167
Merged-chr15-75905647-4	chr15	75905160	75906160	+	955.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	3684.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	4.5440782621868	4.27639959398724	4.37230093573737	4.73582556444529	4.71342734903309	4.48608776912247	0.621620787242341	0.152379042535501	0.520362610658046
Merged-chr5-99582260-4	chr5	99581783	99582783	+	892.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	146777.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.20937294764327	4.30478759140143	4.49299205620601	3.97825646833554	3.67306630724392	3.89117864506053	-1.44365876125714	0.00464978530556453	0.0582416582425732
Merged-chr5-125382213-2	chr5	125381769	125382769	+	729.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	7748.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	4.04294474158459	4.22244296683532	4.53476735417115	4.41177579690433	4.27993352847033	4.44140497757959	0.275783879891529	0.559070605077224	0.864901733108576
Merged-chr12-35047968-4	chr12	35047438	35048438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	749.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	8.51901592709882	8.34342602233229	8.13104700549353	8.46989581976746	8.47928888833494	8.5103345286115	0.19420396395796	0.371269675607615	0.755436533897021
Merged-chr10-80399693-4	chr10	80399190	80400190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-159.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	8.53703171738482	8.24782349883692	7.9533427291606	8.19124716197703	8.3121820592222	8.22502961613917	-0.0427933700897433	0.859541678929801	0.967372405020639
Merged-chr6-97408072-4	chr6	97407509	97408509	+	944.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	ORR1A4-int|LTR|ERVL-MaLR	51277.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.16498006502881	6.15435697870825	6.09249647661399	5.909618958816	6.22344320078968	5.96946957166179	-0.150038899376591	0.611265132238451	0.886007771523372
Merged-chr12-69462136-4	chr12	69461647	69462647	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13403.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.7211197382039	5.84570046280547	5.84243887784621	5.50183619474295	5.46366195391308	5.50704814009446	-0.581887574584078	0.0640931026488086	0.329862519040475
Merged-chr13-48878760-4	chr13	48878231	48879231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033268)	TTS (NM_001033268)	-7846.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	7.59265201179832	8.09519218313795	7.51085399361594	7.44396963618543	7.68218407650911	7.18609390522086	-0.442226905641842	0.118246316331391	0.459446158734642
Merged-chr8-117500384-3	chr8	117499864	117500864	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	2089.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.75083822026707	2.82141707848368	2.90064780914353	2.66783827820857	2.71102275487951	2.73230494952863	-0.634626900954314	0.382485541494135	0.764034496138375
Merged-chr2-83994119-4	chr2	83993622	83994622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52896.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	3.29665983295266	3.3154844399788	3.32317667088709	3.2532347652747	3.40648918988311	3.0965440345507	-0.177748082197985	0.778648854526815	0.945520893795831
Merged-chr13-49186112-2	chr13	49185612	49186612	+	910.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1435.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	3.69945155317802	3.63032930764396	3.91032603488362	3.72152996076616	3.43197607246457	3.57680961843913	-0.573325500658317	0.310858619028296	0.706121153452171
Merged-chr1-34860411-3	chr1	34859913	34860913	+	961.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	MLTR14|LTR|ERV1	10424.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	5.09320863849694	5.28229934508758	5.37970863051448	5.3122798131487	5.32743348983447	5.38337159019698	0.177901622218464	0.608443852687389	0.885006356798728
Merged-chr15-80258275-2	chr15	80257771	80258771	+	853.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001287180)	TTS (NM_001287180)	3087.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	4.06758488700481	3.83505309344554	4.17438923112658	4.03507670846615	3.85452946302266	3.86386985438063	-0.323184371610724	0.528256698353861	0.850495873730805
Merged-chr9-118645057-1	chr9	118644557	118645557	+	652.0	f0_balb.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	38348.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.24979058149726	6.29491996561015	6.53685739230461	5.78195364820532	5.92631550636583	6.11669175452448	-0.708111270597455	0.0173652893565268	0.147066768119886
Merged-chr8-115583520-3	chr8	115583059	115584059	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123335.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.02217248538426	5.32890103444304	5.5882479145588	4.91334110646802	4.46234724991114	5.01469906006727	-1.10452310098098	0.009558165662436	0.0974054927666839
Merged-chr8-34846214-4	chr8	34845729	34846729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 20 of 26)	intron (NM_175091, intron 20 of 26)	38619.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.49581454336458	5.51366866663393	5.65993425362886	5.60289037210993	5.77413238274444	5.69551367899852	0.268790145374201	0.398024618058942	0.774770052576157
Merged-chr5-115634980-2	chr5	115634480	115635480	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	2993.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	4.17006990603015	4.24525587232139	4.39920551496298	4.66202080707977	4.34982014703898	4.33443651419908	0.496741429338449	0.276499050616749	0.673919359199697
Merged-chr12-99964561-4	chr12	99964069	99965069	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146037)	promoter-TSS (NM_146037)	70.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.92903282900641	5.9947180120523	6.04481126767366	5.66727305848401	5.78914010222329	5.63658165696036	-0.501321082266442	0.0979987024516237	0.417343338317564
Merged-chr15-66815589-1	chr15	66815089	66816089	+	541.0	f0_balb.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	16240.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.59356297554059	6.52820813414734	6.41552494722648	5.85889207451945	6.20475808695579	6.40183566991324	-0.575524896220766	0.0529626958611453	0.294836421838107
Merged-chr8-39620493-4	chr8	39620046	39621046	+	967.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 4 of 9)	RMER6A|LTR|ERVK	22132.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.99274152821495	6.28764630763429	6.22419992069302	6.42480789150875	6.51420272008804	6.57818654775093	0.546841901209729	0.0506609779789038	0.286683804112393
Merged-chr6-35043191-2	chr6	35042691	35043691	+	841.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164411, exon 11 of 11)	3' UTR (NM_001164411, exon 11 of 11)	-65192.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	3.07989668558213	3.09262928582971	3.13872140994724	3.47966301304466	3.1085445085105	3.27034926126345	0.801261781558044	0.215929020205514	0.609299440900042
Merged-chr9-50452188-3	chr9	50451689	50452689	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42336.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.98611388976407	3.47015319138633	3.66339223995047	4.30601495780598	4.10280052251828	3.73763429973453	1.05019103467936	0.0748987177549101	0.360241185372864
Merged-chr14-34497598-2	chr14	34497098	34498098	+	660.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	4948.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	3.69093009890116	4.10546380233477	4.04036407830836	4.27991197037041	4.22797276031828	3.85179143972498	0.526709873684071	0.32435304848452	0.717462010747799
Merged-chr2-145746823-3	chr2	145746337	145747337	+	759.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-39279.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	2.97787113987443	3.12916604651898	3.15182018263889	2.75405076429807	2.7868334990412	2.80838759987678	-1.52365748561364	0.033813607922748	0.224851169826262
Merged-chr14-103155900-1	chr14	103155400	103156400	+	855.0	f0_balb.idr	exon (NM_207215, exon 58 of 85)	exon (NM_207215, exon 58 of 85)	-56334.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	2.61576269586961	2.66022104713033	2.70096480149583	2.42788749253349	2.57808410999565	2.58813367671848	-0.717111244322049	0.356370179086808	1
Merged-chr5-92278165-4	chr5	92277596	92278596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	85.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	6.93873089743258	7.05666989614766	6.69420818071101	6.6527203629376	6.89900032613645	6.89148704441153	-0.145701654042114	0.581137002266579	0.873232463830203
Merged-chr1-87634738-2	chr1	87634238	87635238	+	922.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14426.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.47676527670157	5.6926046608933	5.8318237921421	5.60764647415111	5.78806826305403	5.6382795174373	0.0347645725942156	0.914918529689175	0.980959026698783
Merged-chr3-103859093-4	chr3	103858564	103859564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104070)	promoter-TSS (NR_104070)	-731.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	6.8786518153224	6.6576504423961	6.77110024287362	7.16898559541302	7.56709804233843	7.30481154444821	0.895917809391973	0.00051775352312611	0.0107756966363875
Merged-chr11-102556309-4	chr11	102555775	102556775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159492)	promoter-TSS (NM_001159492)	-117.0	NM_001159492	237943.0	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	8.03665865822571	8.3112215393449	8.14268131723016	8.24131930923746	8.03755223272228	7.91140334142681	-0.13599999497213	0.549319712705033	0.860273914502926
Merged-chr1-153806997-2	chr1	153806497	153807497	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 11 of 20)	intron (NM_001243223, intron 11 of 20)	37144.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	2.79372702179377	2.68780204192722	2.49457103382672	2.73941494980434	2.76549148988501	2.95020848252385	0.78242956555621	0.315916340830553	0.710133165572133
Merged-chr1-133136080-3	chr1	133135579	133136579	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133819, intron 1 of 1)	MIR|SINE|MIR	4913.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	4.05203966189573	4.07532558505512	4.02830136156132	3.85665219180785	3.9392242794101	4.14275905803636	-0.223241502203506	0.65138920531919	0.902792421139999
Merged-chr16-23611224-4	chr16	23610648	23611648	+	720.758301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	1229.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	7.34384287246484	7.47672213082138	7.55153704594693	7.72341934321489	7.98899077659369	7.28204776994513	0.364350058069089	0.178281672636047	0.559389924835031
Merged-chr3-116642121-4	chr3	116641592	116642592	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 5 of 11)	intron (NM_008246, intron 5 of 11)	20585.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	4.87412409210765	4.62267833228986	5.54863963904533	5.04481340012361	5.07155849337859	5.2605069687621	0.124663157589528	0.780415745594285	0.946035654483606
Merged-chr6-83640805-3	chr6	83640300	83641300	+	910.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	15316.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.26804728994983	4.83837010171712	5.19395372896809	5.06124037614232	4.93805503866805	4.79658227289006	-0.364725512778123	0.356175876239274	0.743109229981383
Merged-chr19-17333980-4	chr19	17333470	17334470	+	938.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	5535.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.04640431667974	5.05006616109102	5.08779308245366	5.91188777117473	6.1287218771163	5.89029284701869	1.76562406431296	9.17327853983288e-08	6.61429948650272e-06
Merged-chr4-152325145-2	chr4	152324645	152325645	+	971.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	-581.0	NM_001277114	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	5.47796598037549	5.68656860614461	5.73121467299504	5.61601133552565	5.65150618019401	5.52096841129261	-0.055033334649305	0.864531264101271	0.968291113794295
Merged-chr17-5422068-3	chr17	5421601	5422601	+	589.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-3334.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	3.35203538512546	3.39972968951795	3.62098726388625	3.49547893217465	3.14854169731976	3.37367474148427	-0.438545201182414	0.478977557869855	0.823939232913004
Merged-chr18-82862343-4	chr18	82861852	82862852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	6455.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.53901798167699	4.37684065242901	4.37517160969674	4.45208369603705	4.23583649249011	4.35386350954659	-0.232413688542917	0.600841520662167	0.881855262262798
Merged-chr16-18407046-2	chr16	18406546	18407546	+	638.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001272030)	TTS (NM_001272030)	6448.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	3.44990658916752	3.41144823503107	3.40164204846381	3.32800890329203	3.33576615499717	3.36059870164719	-0.316523655376111	0.591612478354144	0.877710165381539
Merged-chr15-27665802-4	chr15	27665302	27666302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	15740.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.52621834222543	7.60381764805447	7.74788484157612	7.47505212860662	7.66495591894413	7.71078611832663	-0.00733601422606649	0.974399695886502	0.994276686350905
Merged-chr6-136803927-2	chr6	136803419	136804419	+	1000.0	f0_c57.idr|f1_balb.idr	TTS (NM_175652)	TTS (NM_175652)	512.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	8.33014309096538	8.77247122211304	8.34663116151573	7.48269833790041	7.75259927053478	7.75594533631866	-1.17896502687789	1.62058572363731e-06	8.25249062989066e-05
Merged-chr16-23269667-3	chr16	23269217	23270217	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-20753.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.19647511660538	4.03043619394632	4.22798060134908	4.12471614242217	3.85291751106817	4.20713068906999	-0.260127180729788	0.598841879846979	0.880844238576651
Merged-chr1-106796263-2	chr1	106795763	106796763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009190, intron 1 of 10)	CpG	462.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	8.5776561200765	8.92711488151629	8.42768551308366	8.42091254543964	8.68706973036346	8.4368871267219	-0.197356136584391	0.407546921472584	0.781669415252306
Merged-chr1-155122063-2	chr1	155121563	155122563	+	979.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22427.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	2.98722185968873	3.07760070033234	3.00321065831415	2.97057580724502	2.93649719100682	3.19020366733839	0.0286396363564432	0.965949151604255	0.992191481673282
Merged-chr5-102035320-1	chr5	102034820	102035820	+	552.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	34601.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.78339183273836	6.07930087120564	6.34990890984546	6.30984891540366	6.51099021942858	6.29562565737244	0.503808843802469	0.102478519160326	0.426970738685715
Merged-chr15-58266620-4	chr15	58266099	58267099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51707.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.92135375982633	8.10511019992452	7.34150796670752	7.50464098419738	7.74724208866737	7.31480219936758	-0.427769663924856	0.139145394320119	0.49838620681798
Merged-chr17-84791998-2	chr17	84791498	84792498	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1212.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	4.16988687689614	4.47719254290036	4.0618502699471	4.12261799793659	4.16065240140209	4.22784864269086	-0.245369535372713	0.611038291663296	0.885863926067525
Merged-chr11-59848219-4	chr11	59847711	59848711	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134029, exon 1 of 5)	exon (NM_134029, exon 1 of 5)	138.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	5.39395058747225	5.46028692329787	6.02275270054069	5.71914549190337	5.34001529994421	5.56429266275943	-0.183298581295314	0.623087414012206	0.891251075175817
Merged-chr9-61029423-4	chr9	61028917	61029917	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12348.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.32279500379335	3.85521842301961	4.11671351948422	4.49946834426266	4.19903283937192	4.28000993009721	0.593063922954218	0.234128084754775	0.63036877369004
Merged-chr9-118726721-4	chr9	118726291	118727291	+	755.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	15099.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.54027227633417	3.52631671673098	3.68573861903647	3.5270306819115	3.18718061076386	3.80289587274716	-0.216932294964877	0.727008918834851	0.930092984118427
Merged-chr10-126869819-4	chr10	126869329	126870329	+	799.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026858, intron 5 of 5)	intron (NM_026858, intron 5 of 5)	31542.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	2.96913531671896	2.64865407714627	2.88057058567738	2.63776802859575	2.3665068749674	2.89492750907167	-1.0060899567058	0.236536810832247	0.632745673713476
Merged-chr15-95772026-2	chr15	95771526	95772526	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18817.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	2.94364341659805	3.14611469244444	3.02495909610158	3.0351856752867	3.07533968116223	3.09716589667526	0.117788507449349	0.858714717866386	0.966967311483659
Merged-chr3-84748329-3	chr3	84747829	84748829	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67248.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.19473129226146	3.67206373717444	3.24531996621114	2.99402142103093	2.8444713186826	3.14066313077578	-1.78667103218067	0.0120147107227111	0.114371359091104
Merged-chr7-108935151-2	chr7	108934651	108935651	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025344, intron 1 of 7)	intron (NM_025344, intron 1 of 7)	736.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	5.77857716713516	5.67771840161396	5.75046200649829	5.87269239580329	5.76831339778563	5.67942742356453	0.0801499781974729	0.794287516846293	0.950654294433248
Merged-chr3-104460328-3	chr3	104459827	104460827	+	969.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 17 of 17)	B4A|SINE|B4	51591.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.99016576043624	3.88941735619762	3.7435056483907	3.68107136790147	3.54720508502351	3.70769613061095	-0.8036714869362	0.136236472413319	0.493146752362964
Merged-chr1-166001732-7	chr1	166001115	166002115	+	931.161926	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198932, intron 1 of 15)	CpG	1019.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	6.09973333818703	5.79443856998314	6.18266076487264	6.65514338416198	6.12803206622916	6.02137917819832	0.460074564357661	0.168009267892405	0.544296650163184
Merged-chr4-149789036-2	chr4	149788536	149789536	+	744.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14769.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.10844304850546	3.98643363051069	3.97632773853877	3.80022969244883	3.71236936406218	3.68118909242684	-0.929731495429725	0.0726454128321183	0.354034185184722
Merged-chr8-46897509-2	chr8	46897009	46898009	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-89378.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	2.64958672811421	2.67028187862239	2.83193953890325	2.54601860730169	2.58943628227572	2.78649316442358	-0.415885009531021	0.582395461900825	1
Merged-chr5-146808727-5	chr5	146808095	146809095	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13639.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.95388099209321	7.35190651032722	7.37798132685668	7.16982503597038	7.42119916785562	6.88145739516676	-0.0783826092217875	0.780346380981658	0.945992914547653
Merged-chr6-5167512-4	chr6	5166987	5167987	+	995.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011134)	TTS (NM_011134)	26459.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.66737777492092	4.83175614941701	4.80057220839794	4.5155326206565	4.63570637917708	5.00366482513921	-0.101351034786149	0.8093780440848	0.954721853010197
Merged-chr2-164670464-1	chr2	164669964	164670964	+	698.0	f0_balb.idr	intron (NM_001161806, intron 1 of 4)	intron (NM_001161806, intron 1 of 4)	3623.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	4.30256189804922	3.86386020451254	4.04489523525748	4.29298940678837	4.27426519241927	4.30197390055324	0.56046952916946	0.252587505590277	0.649948429823529
Merged-chr3-95893352-3	chr3	95892840	95893840	+	825.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-581.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	5.34932068427622	5.3365685459961	5.68085910306788	5.85322463518314	5.71660841771977	5.7426670316866	0.596971997227382	0.0691572156186019	0.344038279792654
Merged-chr2-39226397-4	chr2	39225899	39226899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024209)	promoter-TSS (NM_024209)	-50.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	7.81990919223275	8.14789993394165	7.41721663708216	7.58318506656023	7.66037554898386	7.63873515568448	-0.304601840448014	0.254892923196901	0.65198679229535
Merged-chr10-91702007-4	chr10	91701504	91702504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186825.0	NR_152729	102633867.0	Mm.351514	NR_152729	ENSMUSG00000111657	Gm31592	-	predicted gene, 31592	ncRNA	4.45124397707152	4.41115690555934	4.40066406993848	4.39703458687347	3.98985583512522	4.1473377057014	-0.633795968905221	0.177328692571207	0.558255726686941
Merged-chr8-108615983-4	chr8	108615472	108616472	+	913.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-31295.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.92150786731561	3.94309390767997	3.65448450813907	3.80702119632694	3.65306910355504	3.7261711434463	-0.408615574021857	0.447656115929809	0.806595281383446
Merged-chr11-79622859-3	chr11	79622337	79623337	+	905.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	326.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	8.34113484478901	8.3204629196268	7.43478107636594	8.04007246594399	8.2317608114075	7.42080709554579	-0.218284794715037	0.51767415920803	0.844716414341769
Merged-chr5-74386126-2	chr5	74385600	74386600	+	757.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	145642.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	3.01580632962967	3.05082663883082	3.14459363992004	3.64717592784541	3.71991418355694	3.62073423154033	2.52452332102316	0.000110052474050899	0.00307528184896385
Merged-chr8-35655281-2	chr8	35654767	35655767	+	895.866699	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-66247.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.15069237729567	4.1552301090521	4.10979037276337	3.97896544370352	3.38034990797116	3.83526774136008	-1.20165822050778	0.0362382405399845	0.234188042361187
Merged-chr2-144594050-4	chr2	144593581	144594581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033297)	promoter-TSS (NM_001033297)	16.0	NM_001033297	228715.0	Mm.27391	NM_001033297	ENSMUSG00000074754	Smim26	Gm561	small integral membrane protein 26	protein-coding	5.05110326338942	5.30484739759692	5.31867715194808	4.7936634682548	4.98126859046287	5.0296757843996	-0.611223684044275	0.103530430864835	0.428990592669748
Merged-chr16-24637980-4	chr16	24637466	24638466	+	895.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-83889.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.2759469284962	5.36845766845173	4.90140886242999	5.19263284609256	5.07615578072035	4.80384050240577	-0.345200897920296	0.381130412416025	0.763032822617589
Merged-chr15-8705104-4	chr15	8704600	8705600	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	5707.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.52309563345999	3.52741923078883	3.28116581349383	3.41791615633371	3.52492245469305	3.41321877929791	0.00307666717236501	0.99587953551603	0.998961028701257
Merged-chr6-29529548-1	chr6	29529048	29530048	+	1000.0	f0_c57.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	266.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	6.79032355065323	6.55287427783538	6.73360406816196	6.80140785489349	6.64392690338547	6.52440684837025	-0.045120320338763	0.864722785168663	0.968370346805121
Merged-chr12-24575261-2	chr12	24574761	24575761	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161406, intron 1 of 15)	intron (NM_001161406, intron 1 of 15)	2974.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	2.33184620858323	2.45725512514894	2.62419725268307	2.65053441675635	2.5602799581852	2.81752359352705	1.19800613175641	0.138585470063706	1
Merged-chr17-80445854-6	chr17	80445310	80446310	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 6 of 21)	intron (NM_009231, intron 6 of 21)	34643.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	6.35710452432141	6.51639861624838	5.9105345527722	6.93329023136262	7.25663100863646	6.46307234187667	1.00651610532186	0.00311115373708973	0.043296453368579
Merged-chr4-53353650-4	chr4	53353160	53354160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83428.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	6.98426742585899	6.87696859586832	6.66231525401444	6.7152833707804	6.81620288335199	6.58349963080382	-0.218865320198212	0.404612064260751	0.779747209915063
Merged-chr13-63567430-2	chr13	63566930	63567930	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	intron (NM_001328514, intron 1 of 23)	-1695.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	5.25570840790092	5.31879728960947	5.29998301753683	5.51866732934634	5.55319618075077	5.29930075959664	0.350886033727283	0.300266660246207	0.697114627951072
Merged-chr17-48234708-4	chr17	48234174	48235174	+	995.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347399, intron 1 of 2)	intron (NM_001347399, intron 1 of 2)	1935.0	NM_021406	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	3.61499908466729	3.49826803909187	3.64894655623392	3.28207083381439	3.22942330547766	3.34358026803001	-1.18365569265119	0.0476780850277295	0.276602686045566
Merged-chr2-153144592-2	chr2	153144092	153145092	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-16709.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	4.57558115185408	4.38608888180512	4.79262097433229	4.61391800723755	4.40762565844324	4.8913866614844	0.13168793314834	0.768607762467464	0.942871018290895
Merged-chr1-138271834-2	chr1	138271334	138272334	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1904.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.06648526161036	5.42067369329885	5.18056270711339	5.45222672669684	5.28759699671367	5.24513338638966	0.192663030440972	0.59258319197069	0.878126164048676
Merged-chr16-4682968-2	chr16	4682468	4683468	+	742.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1102.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	6.09962764683214	5.98975350901141	5.75834111820513	6.30120304039688	6.64082710564279	6.23285342521868	0.751896737956308	0.0144854941003953	0.12955650275578
Merged-chr10-78143994-3	chr10	78143486	78144486	+	784.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25782.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.79526349696995	4.61264296838259	4.58489093346862	5.17275436531843	4.80805514334858	4.318771476232	0.343306157669673	0.46412752127725	0.816188315062566
Merged-chr11-117961018-2	chr11	117960518	117961518	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8348.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	5.88338465507646	5.34853004418485	5.42618025507814	5.43011530366974	5.03918881285414	5.85340670686799	-0.19941181250325	0.626606145423881	0.892916235446326
Merged-chr9-14717977-3	chr9	14717493	14718493	+	918.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177905, intron 10 of 18)	intron (NM_177905, intron 10 of 18)	22740.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	3.17755854029731	3.24550842635936	3.46710987288934	3.32826856735356	3.31957151394884	3.43167032922248	0.248674316970769	0.684303696611442	0.915853725815007
Merged-chr7-74686195-2	chr7	74685700	74686700	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131420.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.05678020097787	2.90856727578859	3.44767141902462	3.12256763736029	3.06100669602278	3.41644989265193	0.221497826597927	0.750376178141025	0.937550343416037
Merged-chr13-34154445-2	chr13	34153974	34154974	+	914.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8490.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.62212334701926	2.68837026373943	2.599718680253	2.77310177654689	2.95559254809455	3.04176461335454	1.51183981421728	0.0448016301890874	0.266866206942056
Merged-chr6-72038913-5	chr6	72038400	72039400	+	801.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	RLTR13C2|LTR|ERVK	3628.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	4.27015513177309	3.9326690273228	4.15417765750675	4.10694905422465	4.13226820965591	4.17623305666632	0.0337037049978315	0.944481687034489	0.987726163699689
Merged-chr5-124438528-4	chr5	124438087	124439087	+	846.3660890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1343.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	4.63236417455081	4.82768069992852	5.3052970022929	4.753901756872	4.81725032270148	5.10257100253955	-0.104414040174159	0.809281007262021	0.954721853010197
Merged-chr19-34520851-4	chr19	34520376	34521376	+	808.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	6598.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	7.47201171643051	7.48300947210117	7.50759615887643	7.76687750284844	7.81571754422347	7.58425576882989	0.355767487564053	0.109752024051021	0.442818523844123
Merged-chr10-10468876-4	chr10	10468371	10469371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	3443.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.77650035123233	8.15295292365568	7.91689392115789	8.22411513538685	8.45294527989327	7.79644767118974	0.330511680911657	0.212327945739728	0.604778136757994
Merged-chr4-43478353-4	chr4	43477845	43478845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5364.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	6.5081527464189	6.50674532937628	6.56393142132032	6.71962434434654	6.83378780851654	6.7833418580418	0.408230062852794	0.106001253743243	0.434594013486444
Merged-chr13-102685498-2	chr13	102684998	102685998	+	692.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8049.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.61321921270782	5.32792605987717	5.74887633706895	5.37385255852403	5.41176199333336	5.55259456897977	-0.233627533745963	0.49609061136405	0.832884389427821
Merged-chr8-119841199-3	chr8	119840736	119841736	+	944.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-657.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.8413844063569	4.56812771509672	4.97504332649503	4.87465383539678	4.68077619745244	4.86435255556578	0.0167969286261143	0.967260785176665	0.992555129128888
Merged-chr10-62491623-4	chr10	62491132	62492132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4827.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	7.20540229404464	7.14325476541874	7.00943869937398	6.80021005423547	7.17486628658925	7.06741192538619	-0.149424792592518	0.557543291766279	0.864250916545731
Merged-chr12-85374284-4	chr12	85373781	85374781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	CpG	436.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	8.73959316696309	8.47665475455237	8.3301328507168	8.50701875141337	8.60897155246352	8.37950448549583	-0.0362868434308715	0.871745193889133	0.970250220039897
Merged-chr3-95609413-4	chr3	95608855	95609855	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146133, intron 3 of 4)	intron (NM_146133, intron 3 of 4)	-15625.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	4.28776613037197	4.45145050578631	4.40289981794382	4.11492505871596	4.06198900334695	4.86984516352908	0.0334801919678503	0.948826293180329	0.988169196639905
Merged-chr6-136809880-4	chr6	136809368	136810368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1620.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	6.97079895596694	7.09359061579251	6.800523265624	6.87893330040634	7.18313276482331	6.87440075808944	0.0435934171762907	0.867632885633274	0.969417251892744
Merged-chr10-34418589-4	chr10	34418109	34419109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347463)	promoter-TSS (NM_001347463)	-58.0	NM_001347463	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	7.12545213499509	7.33632568695988	7.13152817317002	7.2740768349067	7.22537340259613	7.26165677294646	0.0705315399247543	0.764705161171885	0.942018580682649
Merged-chr8-33902628-1	chr8	33902128	33903128	+	620.0	f0_c57.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	27235.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	2.55667340052289	2.40075418603691	2.62152083470167	3.13147815128996	2.99234942383674	3.18820374242914	3.66192583670423	0.000104256891214254	0.00293471157109459
Merged-chr6-114268421-2	chr6	114267930	114268930	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-14205.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.65065735469104	4.40976232289867	4.36218454885474	5.02146933046925	4.69705856354187	4.3346564655813	0.563779216829543	0.226196187759291	0.621140322788657
Merged-chr8-46672925-4	chr8	46672409	46673409	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55618.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	4.61854149696616	4.76285360539142	4.8256254275523	4.44044642757272	4.73654383658104	4.95928492291484	-0.0275480089073412	0.94823856439158	0.988083630162243
Merged-chr5-125147457-4	chr5	125146993	125147993	+	936.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	31721.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	4.1086383249805	4.04859958522006	3.83765414816367	4.35776680471713	3.95178448453294	3.90987205168397	0.237936876946791	0.648615150602284	0.901893237722341
Merged-chr6-125164810-4	chr6	125164309	125165309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289726, intron 2 of 6)	CpG	964.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	8.19396623690256	8.05381157171244	7.84852575837032	7.81522541835348	7.95006066722924	7.91285573991359	-0.214439045311242	0.337909048335244	0.727828326832827
Merged-chr17-15816549-2	chr17	15816049	15817049	+	783.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	RSINE1|SINE|B4	10037.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.274262824056	3.22328048713252	3.12297687619676	3.61393810742303	3.66747841200159	3.60614257332072	1.61822215763604	0.00834757907507845	0.0887191930047982
Merged-chr3-95523309-1	chr3	95522809	95523809	+	651.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3477.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	5.39510253291672	5.15131913775945	5.66721140551904	5.65450414793061	5.81803770913222	5.82747395416075	0.677451766822935	0.0483113167891103	0.278757623252945
Merged-chr8-86889222-1	chr8	86888722	86889722	+	649.0	f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3964.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.6221756510049	4.64759125000919	4.93692807450453	4.38027463025009	4.26795558403008	4.90183275609366	-0.486464609779816	0.294803939946072	0.691728256671312
Merged-chr19-6301766-2	chr19	6301266	6302266	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4691.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	3.44628016290168	3.33218768471759	3.64754768402896	3.2365875153321	3.35236755924221	3.23283389508993	-0.762581510507896	0.217135746921684	0.610860845584728
Merged-chr2-129550970-2	chr2	129550470	129551470	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14368.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.76073576821746	3.85974305592711	4.06266668809416	3.93509837842184	3.66187166812589	3.9455518020319	-0.146101046777217	0.783092604754978	0.94689408341983
Merged-chr3-129901425-4	chr3	129900906	129901906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009811)	promoter-TSS (NM_009811)	-9.0	NM_009811	12368.0	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	5.58307134469765	5.69943453732223	5.75388372507112	5.2925957457095	5.28874160733619	5.46914626696504	-0.634197147449666	0.0535948476001674	0.296846174473456
Merged-chr14-26533998-9	chr14	26533426	26534426	+	928.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347494, exon 1 of 20)	5' UTR (NM_001347494, exon 1 of 20)	698.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	6.40137063823176	6.62301470079784	6.25590120124379	6.44569854898525	6.21562617636018	6.2321754513626	-0.233563371847187	0.414768290512417	0.786019635735451
Merged-chr7-143006510-2	chr7	143006010	143007010	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 1 of 7)	intron (NM_020286, intron 1 of 7)	851.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	3.17628611961532	3.26395302970222	3.48465905812575	3.52524856887161	3.49511835532508	3.98332522405522	1.36567323907244	0.0286799442949709	0.203063376863167
Merged-chr17-33678975-3	chr17	33678478	33679478	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109913, intron 1 of 16)	intron (NM_001109913, intron 1 of 16)	6480.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	4.94072390166008	4.60636937149927	4.85746713940137	4.79611744919309	5.17696827944093	4.64184112500088	0.221591208330793	0.60418608049679	0.883003945319161
Merged-chr5-23783146-3	chr5	23782623	23783623	+	770.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178403, intron 1 of 15)	intron (NM_178403, intron 1 of 15)	588.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	3.76436808066288	3.73712286681077	3.78865590480534	3.80552948928508	3.54433417381715	3.47660622890636	-0.485626773861193	0.383513342925447	0.76494131641868
Merged-chr4-3684794-2	chr4	3684223	3685223	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	B4A|SINE|B4	6602.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	6.44511855740009	6.30448448224823	6.97852080585098	7.1889010599806	7.15106575625493	7.60882425290287	1.1165509686086	0.000288326456260095	0.00674285210019392
Merged-chr18-55409420-4	chr18	55408890	55409890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-416799.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.60868564835776	4.56816695381206	4.67567118306451	4.46527862159646	4.63070289533518	4.6635437705802	-0.0630937397853844	0.878826281544929	0.972011235192812
Merged-chr16-36719293-2	chr16	36718793	36719793	+	859.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	25315.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	4.71180055390374	4.49601098332811	4.3765461768343	4.8241547240579	4.51424076059392	4.66034747349438	0.305305522173426	0.48195565281701	0.82522727772513
Merged-chr2-29739624-4	chr2	29739118	29740118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-21910.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	6.34229001788575	6.42821887057712	6.57994592894437	5.99446732568799	6.35082350703796	6.28154681600031	-0.373843270298888	0.195104736373518	0.582787221560878
Merged-chr4-16160625-3	chr4	16160123	16161123	+	710.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3020.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	6.25816420488243	6.07845348383665	6.12275368509006	6.04510923402336	6.16948550613843	6.24527171432877	-0.00649527933152801	0.981818737838827	0.99582830941535
Merged-chr15-83173054-1	chr15	83172554	83173554	+	974.0	f0_balb.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-846.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	7.79003621627223	7.8978870202535	7.76989453739109	7.78198545973546	7.94495397570953	7.73021464814043	0.00709398972303532	0.974209230504858	0.994260005145451
Merged-chr19-36918975-4	chr19	36918481	36919481	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028263, exon 2 of 2)	exon (NM_028263, exon 2 of 2)	618.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	5.65767353824263	5.58492295894538	5.72991707733213	6.26574709757423	5.75679778245323	5.59709370450968	0.460278167496055	0.184316101738029	0.567897898086946
Merged-chr3-89847807-4	chr3	89847297	89848297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	MIR|SINE|MIR	16427.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	5.71323072586072	5.72318079732084	5.97891583739105	5.88061125090554	5.83457558671516	5.90225933107431	0.124655047924157	0.683654836566735	0.915479407206029
Merged-chr11-58103502-2	chr11	58103000	58104000	+	813.833374	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	-470.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	5.88108862821311	6.07892233292507	5.97047997336682	5.517364890708	5.18827461296603	5.46059548168562	-1.09825833618275	0.000777268779986367	0.0148609790085261
Merged-chr1-167517894-4	chr1	167517468	167518468	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51188.0	NM_001013382	240899.0	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	2.85218651531667	2.87477356175315	2.84867115072905	2.56607347421978	2.5227787965547	2.54143538893887	-1.84655685580063	0.0191972796366064	1
Merged-chr15-9629888-4	chr15	9629399	9630399	+	975.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-100023.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	3.58860490386922	3.49587802560185	3.1571173271772	3.39994367425673	3.23760118874546	3.35337075713105	-0.402303274037048	0.525125667767853	0.848874487604023
Merged-chr16-84735977-4	chr16	84735479	84736479	+	836.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	-677.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	4.4484292650085	4.34158814232558	4.42465561674659	4.73818132603274	4.78431432560841	4.8859823709636	0.959614774950665	0.0203519354766971	0.163317952275534
Merged-chr8-41416308-2	chr8	41415841	41416841	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013522, intron 1 of 8)	intron (NM_013522, intron 1 of 8)	777.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	5.50384820507408	5.47080266759421	5.38110589692068	5.88229330806168	5.45154358661087	5.47606441357769	0.308311599969413	0.370753116227931	0.755026439587207
Merged-chr10-40258590-4	chr10	40258087	40259087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-875.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	6.50327584479189	6.59077556094134	6.2678324877874	6.74373501621694	7.0063699266656	6.7330778514394	0.584530930389146	0.0327459657968031	0.220366680802201
Merged-chr9-116101413-4	chr9	116100919	116101919	+	899.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73944.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.75666511350388	6.85714146717719	6.8452593553759	6.17599026328393	6.59829916565533	6.54281684382747	-0.577295587177981	0.0365651610421007	0.235324767576078
Merged-chr7-101360645-4	chr7	101360151	101361151	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	12582.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	5.97613432034357	5.53236298924179	5.43735121822047	5.53493813100236	5.58419445782891	5.0400367330847	-0.481924551807809	0.212167929727967	0.604576945822415
Merged-chr7-135598043-4	chr7	135597521	135598521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	4540.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.17149512293668	5.44107365427149	5.85479916563038	5.23944926692577	5.02113002655138	5.44973711501181	-0.531043563101388	0.175969292104736	0.556082959363853
Merged-chr4-129336819-2	chr4	129336319	129337319	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025970, intron 1 of 6)	B2_Mm1a|SINE|B2	793.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	4.19816392452212	4.18037815796734	4.19097561437428	4.30768647205962	4.45444067112017	4.16399031596308	0.363216533523965	0.43114757370231	0.796688090876857
Merged-chr17-22360765-4	chr17	22360274	22361274	+	854.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347330)	promoter-TSS (NM_001347330)	626.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	4.92055438549681	5.24780172672154	4.87349284947875	5.11148971800518	5.45590835002818	5.57845892836635	0.727284878910726	0.061307259999723	0.321053973595783
Merged-chr4-124645349-4	chr4	124644854	124645854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12292.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	3.1399684382393	2.70384123964824	3.03890689092959	2.89183134969488	2.86136776521202	2.93358106633453	-0.376373353748632	0.603843141939106	0.882837513989345
Merged-chr5-43878641-2	chr5	43878135	43879135	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	9826.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.10184302384764	7.16800018014719	7.25888902885187	7.27523841522106	7.38030369772136	7.31625911075766	0.227646665007991	0.324190968462371	0.7173095907889
Merged-chr17-50490303-4	chr17	50489797	50490797	+	937.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19250.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.78962793034458	5.67751651992364	5.6866944130306	6.01455066067772	5.60484830951187	5.60987644758383	0.0707358201242398	0.829333387259158	0.960024094417547
Merged-chr14-17746683-3	chr14	17746161	17747161	+	745.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	L1MB8|LINE|L1	85701.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.3852392613374	2.47767458304304	2.68291672006466	2.53660920506958	2.31255031406344	2.23812447305612	-0.918930697475448	0.291329100568859	1
Merged-chr14-55592639-2	chr14	55592139	55593139	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194346, intron 3 of 20)	intron (NM_194346, intron 3 of 20)	897.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	4.07526543847571	4.07027345851674	4.55835076658675	4.3641805100594	4.15012505752164	4.25723803544222	0.0413266931208214	0.932947774924146	0.985356091252617
Merged-chr14-57665874-3	chr14	57665409	57666409	+	626.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-953.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	4.95366352803173	5.38160082033535	5.61079693164632	5.0116604048391	5.05846536084474	5.12880517584424	-0.550063539480208	0.159983164942731	0.532517768963708
Merged-chr15-5244214-4	chr15	5243736	5244736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-49.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.85328057438704	4.84233723164633	4.95291518275824	5.39580453980424	5.13333403473256	5.1909066660639	0.771926475805079	0.0364753432839906	0.235007371042932
Merged-chr3-105896203-2	chr3	105895703	105896703	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8218.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	4.3455072762134	4.24059720689935	4.44083745512721	4.41673555317537	4.43168816961232	4.66476134836296	0.417353533075765	0.343809386421043	0.73257256985281
Merged-chr8-123280768-5	chr8	123280276	123281276	+	954.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016925, intron 30 of 42)	L1MB7|LINE|L1	-26554.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	3.84933096839646	3.89528959746191	4.14791272089215	5.38805016566644	5.51685357613371	5.43742524865432	3.88033162308896	1.77081431511598e-15	5.28121568215664e-13
Merged-chr1-85698351-3	chr1	85697844	85698844	+	660.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 14 of 19)	intron (NM_013673, intron 14 of 19)	38262.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	4.01779557440713	3.82887043625154	4.0825798606004	4.0288926215707	3.96063157659802	3.85712917881112	-0.0649664517301582	0.89760410288444	0.976055448838318
Merged-chr13-40921486-4	chr13	40920997	40921997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	3863.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	5.73046834076579	5.21104279773743	4.946126866066	5.36793914064742	5.20281453874908	5.05280318957546	-0.264054239221487	0.520253321884119	0.84630287594248
Merged-chr4-32575397-4	chr4	32574910	32575910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 4 of 5)	exon (NM_001109661, exon 4 of 5)	-3748.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.88930564483503	4.78794990351725	5.27667284758848	4.61233818448225	4.80700357435919	4.78296718958324	-0.561138049525184	0.174778856962529	0.554295093299313
Merged-chr17-65630278-4	chr17	65629770	65630770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9486.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	6.78566319572222	6.60940565539613	6.78948201242603	6.78000630525123	7.05546380430243	6.89194358396265	0.297597355915719	0.247165935537013	0.644145276280485
Merged-chr19-10305810-4	chr19	10305301	10306301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-924.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	6.93556044849086	6.90887006511971	6.28183425666833	6.05080110564371	5.9731689611744	5.54834955710739	-1.42443954630887	3.06289078179362e-05	0.00104793180991564
Merged-chr5-64805355-2	chr5	64804855	64805855	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	1832.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.37435459920637	6.70605858776292	6.67357960796266	6.57310027732102	6.89012166182226	6.61761322012487	0.187312010165666	0.502099876237099	0.836293742657415
Merged-chr17-28809602-2	chr17	28809102	28810102	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 2 of 12)	ID_B1|SINE|B4	8476.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	3.91069016308942	3.96460194032353	3.99552079649228	3.81925866770148	3.8694736615016	3.86839934066912	-0.319751727135233	0.525062429444866	0.848874487604023
Merged-chr18-84092458-7	chr18	84091935	84092935	+	829.8809809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	4277.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	4.98775732957921	5.38128421574789	5.72660517028717	5.50708035764528	5.71119864701743	5.43996410452596	0.334382794128906	0.381738433718284	0.76334093111637
Merged-chr10-57761941-1	chr10	57761441	57762441	+	555.0	f0_balb.idr	Intergenic	Intergenic	-22982.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	5.94379232992866	6.12781140087012	5.76646573167685	5.46497319365537	5.8134647131094	5.60855712090996	-0.568308201813963	0.0831623885953833	0.381505377849687
Merged-chr9-64789496-4	chr9	64788997	64789997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21514.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	5.45233804307917	5.2892726894183	5.20035424256563	5.3590025762152	5.33417949876536	5.23120880547661	-0.0229294706648162	0.94715436200642	0.988008807662239
Merged-chr9-90060082-4	chr9	90059583	90060583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 1 of 10)	B4A|SINE|B4	5816.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	7.71659080955247	7.71168499579616	7.2648913481128	7.73243114488905	7.78282090152853	7.63458971974254	0.187261849368072	0.446293697195123	0.80579997466659
Merged-chr1-155416308-4	chr1	155415816	155416816	+	865.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	1128.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	6.07307765298785	6.22126016665991	5.77251854984389	6.46765207613704	6.57295345882945	6.09299242086855	0.594966824407332	0.0599823883873024	0.317073284320274
Merged-chr2-155591444-1	chr2	155590944	155591944	+	562.0	f1_c57bl6.idr	intron (NM_008180, intron 1 of 12)	intron (NM_008180, intron 1 of 12)	1366.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	3.98250895490856	3.69410765361681	3.99854516896983	3.8571516610971	3.94360432932046	3.97193886733229	0.0925794139601301	0.857956210306188	0.966785186918462
Merged-chr1-120076498-4	chr1	120075997	120076997	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-2717.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	5.93394097026073	6.24130618221001	6.34027780143641	6.30751964523328	6.04992163490677	6.07415726961469	-0.0470273839973158	0.876624423027575	0.971344419120637
Merged-chr11-89100656-4	chr11	89100157	89101157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26816.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	3.55515427624669	3.2780041990961	3.31349505268804	3.56270982888222	3.68243582267645	3.55813552432169	0.780746591333716	0.188437137583148	0.574087483304722
Merged-chr7-133050820-4	chr7	133050316	133051316	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	31044.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	4.5511994487016	4.79169698025816	5.00865545040207	4.72089793200568	4.71012967921369	4.71596936534408	-0.165541142317605	0.688715714852762	0.917235946766438
Merged-chr6-29211209-2	chr6	29210709	29211709	+	612.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302934, intron 2 of 14)	intron (NM_001302934, intron 2 of 14)	1088.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	3.94608584582602	3.50293475929284	3.93585731598574	3.9454812984485	3.79732579408208	4.1842116020673	0.525769965819314	0.346407360095156	0.734677492075457
Merged-chr12-71137186-4	chr12	71136711	71137711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286203)	promoter-TSS (NM_001286203)	363.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	6.32843880651523	6.78357490279799	6.51455878010428	6.93232708601951	6.98941153793409	6.69509951552858	0.508357959919404	0.0707854553584678	0.348868437257914
Merged-chr1-191280334-2	chr1	191279825	191280825	+	768.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	37793.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	5.67166464560916	5.42197835522012	5.32615838324933	4.82354070441028	4.74067101464674	4.86615246269697	-1.4291601424262	0.000116074466785948	0.00321622518558948
Merged-chr6-72414994-2	chr6	72414494	72415494	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019802, intron 2 of 14)	MTD|LTR|ERVL-MaLR	686.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	4.68435504816364	4.82270150038859	4.91142018429333	4.80553741633515	4.79388840987694	4.83093801455464	0.0112624257135461	0.977004101472994	0.994769134402338
Merged-chr16-36710564-2	chr16	36710064	36711064	+	708.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	16586.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	6.43058932071569	6.03279404389523	5.92959340341476	6.20991985170007	6.30962998964397	6.22008203709229	0.150518473740027	0.622568168798652	0.891197759894683
Merged-chr8-85083244-4	chr8	85082744	85083744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-25.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	7.99950079580001	8.02124627483224	7.6582263636706	7.81611482148258	8.36836101357483	7.62680183347648	0.113920043390652	0.688162846110391	0.917193226920892
Merged-chr12-100006960-6	chr12	100006520	100007520	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	42521.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.13829630874866	6.21122144742737	5.7086861274618	5.50033955010461	5.76115793355369	5.33588322560682	-0.875336517968667	0.012036497740367	0.114513252227356
Merged-chr10-80743557-2	chr10	80743057	80744057	+	638.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1282.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	3.68297579380695	4.00701015163933	3.60287504923088	3.74206430457276	3.69959187143236	4.02894418866266	0.129040609733227	0.818284103799424	0.956893875468237
Merged-chr12-38787294-2	chr12	38786794	38787794	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	IMPB_01|Satellite|Satellite	3583.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.74359336526926	4.0864302077595	3.94920270251772	3.86469958580767	4.03594443771924	4.15744248681658	0.256591365425752	0.619533817901171	0.889823933162803
Merged-chr1-64617241-4	chr1	64616735	64617735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-67.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	7.99781053370231	8.21911621274051	8.0583458994729	8.04477488104028	8.4284403224592	8.28613489673563	0.237473712574603	0.297897330167734	0.694715276025696
Merged-chr3-60601801-2	chr3	60601301	60602301	+	912.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 2 of 7)	intron (NM_001253711, intron 2 of 7)	100622.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.07295358538626	2.93842087070785	2.68775804406377	2.85423124614613	2.77508851050991	2.95396707812161	-0.267794253543816	0.71620510246179	0.926569584146506
Merged-chr5-99224691-5	chr5	99224329	99225329	+	817.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	28098.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.00887362890722	3.86435063174664	4.18465318859489	3.79518679933324	3.9736838625832	4.07433740213169	-0.204313672609069	0.688965015642528	0.917235946766438
Merged-chr13-34875973-2	chr13	34875495	34876495	+	950.666626	f0_balb.idr|f0_c57.idr	intron (NM_013830, intron 1 of 14)	CpG	501.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	7.45726625834197	7.66563238770293	7.61079094109575	7.46695161899927	7.29515471158676	7.60306993109991	-0.18465838805598	0.433181082175655	0.797713962870369
Merged-chr7-133743068-2	chr7	133742568	133743568	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	17201.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	2.67942589371495	2.80512827898522	2.88313928276516	2.43579754081412	2.58611399650551	2.65561917696955	-1.28948536068954	0.10201997937349	1
Merged-chr4-19942413-4	chr4	19941901	19942901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19835.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	6.0018271584714	6.32836346019062	6.0628632724613	5.78070021789588	6.08553024063943	5.86212405080068	-0.377597936928946	0.224177925646096	0.618994419683436
Merged-chr10-128535994-4	chr10	128535481	128536481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10122.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	6.4781190600027	6.25484203122367	6.51560355187502	6.38379758373941	6.48390597170808	6.33606158403968	-0.0129928630269923	0.962227245191572	0.990802868210603
Merged-chr2-167743671-2	chr2	167743171	167744171	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52494.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.85669536307102	4.56146676702493	4.40979738291577	4.94572174349865	4.44852642013349	4.69600499433802	0.185388427755371	0.681938302790191	0.914908045004202
Merged-chr19-43880402-1	chr19	43879902	43880902	+	541.0	f0_balb.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-634.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.27216296533142	3.13481570055434	3.18172354167653	2.83428689171519	2.83450288648424	2.95899662207024	-1.56334302805701	0.0243274297605256	0.183637555612249
Merged-chr5-121547445-2	chr5	121546915	121547915	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1523.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	2.88412745793811	2.89853596118658	2.98573570316528	2.98273076073526	2.91621218499835	2.93855772406323	0.119220553839805	0.860487653613321	0.96754715046901
Merged-chr11-75654173-4	chr11	75653673	75654673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	-1842.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	8.48019258084517	8.17388511783063	8.04512071262356	8.21625548638243	8.34252809127416	8.07897731307767	-0.042306882640202	0.856765061182213	0.966613884516346
Merged-chr7-114415276-4	chr7	114414760	114415760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	6.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	4.70959108832966	4.33183908480145	4.48860781724112	4.03577761594363	3.41113626536771	3.79216656586527	-2.23823467057807	0.000120031880642744	0.00330934815259161
Merged-chr12-80259679-7	chr12	80259167	80260167	+	874.38092	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	CpG	704.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.13940504165656	6.2890415182421	6.39208179450735	6.48370853426136	6.22632412761838	6.39631608960611	0.159773329124265	0.570628196228307	0.869253690275099
Merged-chr13-34715574-4	chr13	34715065	34716065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-24077.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.62468088252773	4.67910035650028	4.45470831456572	4.54076484178653	4.28382765141538	4.08486080019437	-0.687641606277423	0.135964786527101	0.492892343368928
Merged-chr6-114362576-4	chr6	114362075	114363075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-35361.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	5.65625971297494	5.51491544199561	5.31910450435533	5.34854233283812	5.36960926536562	5.25082868165218	-0.357903230347366	0.295432738228358	0.69234403431829
Merged-chr2-152294683-3	chr2	152294203	152295203	+	687.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	831.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	6.94856122448231	7.16805506281495	6.27334644065998	7.02744954823893	7.2286987942875	6.26504042845762	0.0816420984837979	0.892037551964648	0.974942585822634
Merged-chr18-46599874-3	chr18	46599385	46600385	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010120, intron 2 of 2)	MLT1D|LTR|ERVL-MaLR	2181.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	4.66576754719896	4.53518967477269	4.64429830388923	5.0356008113061	5.07883340591401	4.9075166573808	0.908624360738513	0.0199434213968324	0.161096224404197
Merged-chr11-83600783-4	chr11	83600287	83601287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	-7700.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.2961247426896	6.42563850266889	6.36192816086268	6.05401269430932	6.09114409018243	6.0267341746784	-0.510072654396294	0.065962852778438	0.335221959181517
Merged-chr13-110600198-4	chr13	110599687	110600687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	205143.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.59487755952392	7.66773538838823	6.68750748231422	6.94677917652576	7.08414803743876	6.38819573532028	-0.820441260421951	0.021866488280391	0.171372963816029
Merged-chr12-76961653-4	chr12	76961195	76962195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 1 of 4)	intron (NM_001361663, intron 1 of 4)	553.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	8.25843856352719	8.71827664475238	8.35000421354528	8.4750387290853	8.68699428184337	8.3510313080471	0.0752252099390073	0.754360113754177	0.938865566968672
Merged-chr13-95534406-1	chr13	95533906	95534906	+	685.0	f1_balb.idr	Intergenic	Intergenic	-9166.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	2.55241392003188	2.48143302444652	2.52606141433979	2.99803274397779	2.60137261245762	3.03581572990348	2.0511583216519	0.0120254110778989	0.114433943843757
Merged-chr14-120273748-2	chr14	120273248	120274248	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	2.50463785493111	2.72035966576603	2.79410214837702	2.50790732398063	2.52487089125285	2.74826016898916	-0.459697177410465	0.556719728527877	1
Merged-chr9-20891531-2	chr9	20891031	20892031	+	918.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 10 of 11)	exon (NM_145610, exon 10 of 11)	3356.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	6.21872603121222	6.3044854035709	6.30212470310737	7.24153251437946	7.30769244062241	7.00982459563286	1.44813305277998	1.86970807793843e-08	1.59400276382276e-06
Merged-chr5-88721694-4	chr5	88721178	88722178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	807.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	6.12217214209972	6.01113373470503	6.29329644468756	6.09364587707057	5.928008667277	6.35278945967288	-0.0264232211568948	0.93075941817305	0.984662119275083
Merged-chr17-47510579-2	chr17	47510079	47511079	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1F1|SINE|Alu	5528.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.88318190983567	6.04224321082288	6.02475819058107	6.02978223852072	6.27916352646272	6.23352186885247	0.349731960443225	0.230518954928482	0.626341302534829
Merged-chr10-98708802-3	chr10	98708312	98709312	+	581.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205830.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.01176118011315	5.47100289586762	5.03486326501582	5.1718248900109	5.50582629154723	5.42863798768695	0.354309720850738	0.354632933933382	0.74180590680331
Merged-chr10-80386830-3	chr10	80386268	80387268	+	856.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198615, exon 1 of 2)	exon (NM_198615, exon 1 of 2)	883.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	3.64492273009789	3.18646554983632	3.47963340439042	3.67483973426472	3.15643407195945	3.32309866635491	-0.176168299581241	0.789862487020061	0.949311112850285
Merged-chr17-34144919-1	chr17	34144419	34145419	+	680.0	f1_c57bl6.idr	promoter-TSS (NM_010388)	promoter-TSS (NM_010388)	-497.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	2.56938223898094	2.81747111420097	2.99021348143574	2.97291163208396	2.91363225587831	2.94550336268488	0.714047482738274	0.33653511964576	0.726542842496092
Merged-chr17-5589789-2	chr17	5589289	5590289	+	899.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	97189.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.85453857444478	6.85564052069698	6.34589142310316	6.91384861938267	6.75993689536709	6.61699362608126	0.0829868691138726	0.772852885286762	0.943912458173701
Merged-chr14-122643310-2	chr14	122642810	122643810	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	L1M2|LINE|L1	108982.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	3.68503065051808	3.74389386193915	4.00787025078697	3.74397886040932	3.65975704015192	3.93931727508076	-0.108478581686951	0.84112093618833	0.962841569678474
Merged-chr7-101947341-4	chr7	101946831	101947831	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13474.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	4.54872487047449	4.45981578455555	4.77970362025247	4.74881298818466	4.72821890849385	4.98337982772189	0.527235514604815	0.203180933346511	0.593047970473348
Merged-chr10-21696873-4	chr10	21696354	21697354	+	967.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6009.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	2.80751461901392	2.84684198604701	3.08886636636021	2.82963331729463	2.65170716354234	2.54616920574812	-1.21552710761894	0.118808444635837	0.460712023070245
Merged-chr19-46304647-4	chr19	46304116	46305116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-121.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	9.15848951926814	9.25044750692467	8.85412547797399	8.93129129613434	9.24367116855703	8.76713018185491	-0.137295518908056	0.562822746234029	0.865755360453189
Merged-chr5-34949431-4	chr5	34948932	34949932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-16.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	4.14156967877541	4.31394028599439	4.63620606739873	4.28813059650828	4.29084742175149	4.20668105253358	-0.275745219633448	0.559867424947594	0.865160804795889
Merged-chr19-42129116-4	chr19	42128621	42129621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-128.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	7.00584514118077	7.02687403581895	7.17155104703545	6.51411085302282	6.58402754567704	6.59970360800767	-0.777687429636385	0.00181929545448444	0.0287030595708649
Merged-chr4-34494570-4	chr4	34494059	34495059	+	813.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56056.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	4.29297725205692	4.34457372645023	4.54078942377672	4.23844127467051	4.36513316705604	4.22160079450148	-0.282687962766133	0.532874509846879	0.852011692079098
Merged-chr12-17711585-4	chr12	17711089	17712089	+	973.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	MTC|LTR|ERVL-MaLR	20780.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.43708070857973	6.28021572924256	6.19488492144021	6.865105104803	6.85378667691303	6.49882534604911	0.71285951387324	0.0105831547062361	0.104584695581531
Merged-chr2-166675608-3	chr2	166675118	166676118	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	38214.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.82634720102754	4.29434623983648	4.32220255974242	4.86762292623114	4.40744035695674	4.39238175012233	0.157307351615805	0.747355802423268	0.936600911319824
Merged-chr6-98332896-4	chr6	98332372	98333372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	9882.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	4.23338856233848	4.28882475025085	3.94866665623646	4.43243457205822	4.54322771984639	4.17879218774171	0.604085092554471	0.212942155656456	0.605566144429689
Merged-chr10-19062248-4	chr10	19061726	19062726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46816.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.30123181287627	8.43257652129602	7.86315817955539	8.05595051090322	8.69665216486517	7.6475966465695	-0.0087070051985745	0.978587478645072	0.995160277495735
Merged-chr4-137372344-2	chr4	137371843	137372843	+	878.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14584.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	5.67660226601071	5.99604985901711	5.91624606646546	5.57030626836205	5.76773146898328	5.59146326953479	-0.390332230136521	0.224759501187272	0.619654371120589
Merged-chr4-139197639-4	chr4	139197139	139198139	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3528.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.18764605507714	7.28827436761495	7.05079023227963	7.10872639001597	7.46792303609269	7.19838100601617	0.134917451554491	0.591660095915876	0.877718735408096
Merged-chr11-100575070-6	chr11	100574560	100575560	+	972.589294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146318)	promoter-TSS (NM_001146318)	121.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	6.55270603849176	6.57572736925487	6.53526336587374	6.9181061896678	6.90344131943613	7.06865285708845	0.632609899408512	0.0114891381493209	0.110916371635769
Merged-chr10-93589633-4	chr10	93589102	93590102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027246)	promoter-TSS (NM_027246)	56.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	5.79792661737493	5.91834233982405	5.51561316723696	6.64450775798675	6.13854677619167	5.92430760524739	0.881456326890942	0.0119201595026901	0.113718485656941
Merged-chr13-37861021-2	chr13	37860521	37861521	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-27413.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.75799420869559	4.859540613866	4.33975678239169	4.64509451195955	4.39700415989581	4.71363213328182	-0.234509459963517	0.601644127673896	0.881998497315248
Merged-chr18-56675216-3	chr18	56674724	56675724	+	610.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32589.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	2.93154537869792	3.14281557031783	3.06975297859027	3.50748777501652	3.15033181808238	3.32049233676662	1.18864648592902	0.0740661688307009	0.357995804592795
Merged-chr11-64079533-4	chr11	64079023	64080023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033780)	promoter-TSS (NR_033780)	39.0	NR_033780	66456.0	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	6.51149895093928	7.05506494818678	6.62961194270385	7.07999720279663	7.06674168410013	6.83476798789264	0.371215359087129	0.193490814385201	0.580639919336548
Merged-chr1-56795335-1	chr1	56794835	56795835	+	632.0	f0_balb.idr	3' UTR (NM_139146, exon 11 of 11)	3' UTR (NM_139146, exon 11 of 11)	-157884.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	2.799837052479	2.59795971892473	2.85487914343953	2.71303232950912	2.52317126582861	2.74747274642775	-0.498222887283652	0.512610938494158	0.842068982479948
Merged-chr11-111065273-2	chr11	111064773	111065773	+	727.583313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-891.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.98542647400794	5.00472251837163	5.37245418110816	5.17975581659178	5.05231114683569	4.87312235213407	-0.156836392712661	0.684620975488772	0.915930759709583
Merged-chr9-70502713-3	chr9	70502141	70503141	+	559.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001357494, intron 2 of 14)	intron (NM_001357494, intron 2 of 14)	737.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	6.85441003002678	7.01830320775816	6.87056718142206	7.49915994762963	7.53424823537439	7.15107287087644	0.742597724018588	0.00317098112194333	0.0439312349641459
Merged-chr2-122611288-4	chr2	122610742	122611742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	35.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	8.02363988903329	8.43655711695124	8.11890826123189	7.87044642232791	8.37101593510428	7.65005959454178	-0.277381031580469	0.322980225629606	0.716374449399453
Merged-chr7-141373492-2	chr7	141372992	141373992	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8382.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	4.91913739334386	5.17750419495083	5.4420368221132	5.28043845551815	5.07805656359746	5.0360159286064	-0.100781062531888	0.793028225760173	0.95019501201026
Merged-chr4-139622768-4	chr4	139622278	139623278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175438)	promoter-TSS (NM_175438)	-116.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	6.55962714973761	6.5899436113687	6.62261407013003	6.88707644885974	6.89393325760385	6.48581286597524	0.300910646639001	0.264782844109638	0.662666328517541
Merged-chr13-99338430-2	chr13	99337930	99338930	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	6248.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	7.08573461270813	7.17750562659545	6.86396026539537	7.49821558537134	7.80047878640139	7.24478008665987	0.736160727901558	0.00640953490805375	0.073339463782912
Merged-chr1-173423085-4	chr1	173422582	173423582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	2478.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.78174946395514	5.06070506073844	4.71164567477937	4.8173154484629	4.7290371366205	4.61036369508506	-0.325827796100729	0.424558585153537	0.792697196836987
Merged-chr5-64202476-3	chr5	64201976	64202976	+	924.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27881.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.77771321927289	4.6788767933147	4.90418957133233	4.8080263816808	4.48170347553982	4.45223809933733	-0.451502302947655	0.285642917850423	0.683152802436807
Merged-chr1-118311333-4	chr1	118310855	118311855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153836)	promoter-TSS (NR_153836)	-9.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	7.19634291945589	7.29134363593342	7.16700507414555	7.20104279509379	7.17156373864559	6.89897458896582	-0.17449685434748	0.474383002503154	0.82139231300766
Merged-chr8-25192076-3	chr8	25191576	25192576	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	9466.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	2.92453924798839	2.84659029197458	3.1097424844954	2.90568426508481	2.8211038653833	3.0689517106029	-0.139348581115701	0.841330663537144	0.962909549034125
Merged-chr16-91420528-2	chr16	91420028	91421028	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 5 of 6)	intron (NM_008349, intron 5 of 6)	14293.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	2.82232482993396	2.94386706628145	3.25970033141356	2.7445098267955	2.98675373905356	3.22493588528056	-0.0924746279791109	0.900445698468408	0.97678489900475
Merged-chr13-75707405-4	chr13	75706889	75707889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138953)	promoter-TSS (NM_138953)	-95.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	7.34432698263755	7.22095794109342	6.97808265978992	7.14340202800473	7.02100918611145	6.84367324997496	-0.277711200501557	0.278425999940291	0.675623815920472
Merged-chr5-112317559-2	chr5	112317059	112318059	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8810.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	2.85975244783639	2.62706989952965	2.88668110672936	2.78831127416908	2.52072874855404	2.77930856458201	-0.507676418453246	0.506471856415772	0.838456691509363
Merged-chr8-83158632-4	chr8	83158124	83159124	+	675.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6728.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.98933948557737	4.67132394916463	4.47864948611076	4.80364369119799	4.67436233006787	4.94723234016075	0.147741604961619	0.729732295613144	0.930635866770147
Merged-chr18-5101533-4	chr18	5101056	5102056	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347449, intron 22 of 30)	MRLTR33|LTR|ERVK	54967.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	6.17742161202647	5.70679264590846	5.72474557381328	5.47395415282746	5.03174553696075	5.1751308703092	-1.23957161539977	0.000746447399642155	0.0143807351769911
Merged-chr16-30789150-4	chr16	30788646	30789646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189423.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.90256549891766	6.86982899424925	6.912514887517	6.65268782681372	7.07657044144746	7.07653844982502	0.0875989426749581	0.740184506549692	0.934499978758628
Merged-chr2-75707217-1	chr2	75706717	75707717	+	588.0	f1_balb.idr	Intergenic	Intergenic	-2554.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.52928107936895	4.63997919893827	4.55067482867222	4.2915317220912	4.42955343560111	4.73224055977461	-0.2176850124169	0.619500536168066	0.889806849760447
Merged-chr1-172631879-2	chr1	172631379	172632379	+	586.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026725, intron 1 of 1)	intron (NM_026725, intron 1 of 1)	1095.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	3.44766136447324	3.55442224690787	3.90019077544038	3.91221567625132	3.88055766330113	4.31208000534493	1.28563145987284	0.0240403150754998	0.182313756544129
Merged-chr8-70509530-2	chr8	70509013	70510013	+	811.208374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151735)	promoter-TSS (NR_151735)	432.0	NM_001348229	22186.0	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	5.699025662599	5.79924590947758	5.71012770503367	5.87798939921761	6.03616966555321	5.87504111499771	0.354619384641356	0.240959217462844	0.638007204328764
Merged-chr17-10367009-2	chr17	10366509	10367509	+	597.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42407.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	2.51085566837528	2.62271947917564	2.66115409349241	2.58283095593387	2.43205514444179	2.4805963122165	-0.587446273430761	0.454172106236865	1
Merged-chr4-108620707-1	chr4	108620207	108621207	+	695.0	f0_balb.idr	intron (NM_177045, intron 1 of 24)	intron (NM_177045, intron 1 of 24)	751.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	5.93026956535466	6.20426016076205	5.569668927541	5.637442311502	5.84750957206253	5.47761843250036	-0.475230542052649	0.176577850263138	0.556963220799667
Merged-chr2-177840357-4	chr2	177839841	177840841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024849)	promoter-TSS (NM_001024849)	-5.0	NM_001024849	329575.0	Mm.425123	NM_001024849	ENSMUSG00000095362	Gm14325	-	predicted gene 14325	protein-coding	5.39614024381496	5.32018516501584	5.13145862873978	5.41135205901074	5.38438975870823	5.62154804280901	0.337443112741695	0.32976231523523	0.721504110160967
Merged-chr2-165957454-4	chr2	165956809	165957809	+	815.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35328.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.00330327681057	7.0458001096052	6.92282978689224	7.53175651418872	7.7563612315149	7.2721562930222	0.818294308360038	0.00121900963284522	0.0210263999854447
Merged-chr12-76957859-4	chr12	76957354	76958354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4394.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	7.68747998194072	7.671031067473	7.43512227844574	7.5654521362845	8.03860120738991	7.41506272879003	0.153009989958667	0.56979351322242	0.868897023832802
Merged-chr19-7303491-2	chr19	7302991	7303991	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-8044.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	3.69410608737042	3.21109184165465	3.32866374981041	3.42973997322385	3.0943495151891	3.40123323743727	-0.454321217893768	0.488953830429272	0.829423271678195
Merged-chr14-67072467-4	chr14	67071997	67072997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205188)	promoter-TSS (NM_001205188)	-26.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	7.57564910963598	7.79924715310759	7.33167043275953	7.47802381332523	7.46377402411718	7.30748408747214	-0.247475865350126	0.317096199677531	0.711036676253037
Merged-chr11-86658041-4	chr11	86657540	86658540	+	901.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 5 of 11)	B3|SINE|B2	13235.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	4.75813156788929	4.69160196786027	4.50132975696166	4.71453852246312	4.70942683935021	4.52511488402961	-0.00878792845864088	0.983123103745162	0.996221195124187
Merged-chr12-36030240-3	chr12	36029720	36030720	+	609.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	RSINE1|SINE|B4	12258.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	7.12895353266234	7.53919922364201	6.91784840193444	6.24632910108813	6.40519070925022	5.80063129328549	-1.62801628713246	7.61653892788148e-07	4.27636282801054e-05
Merged-chr10-44590389-3	chr10	44589831	44590831	+	723.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131583.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.33054457627316	6.51455588066663	6.75062283098702	6.44444450573507	6.50851979028985	6.85146309281986	0.112876713890697	0.697458405439829	0.919964475371135
Merged-chr1-176223453-4	chr1	176222957	176223957	+	939.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-9515.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	5.29134429479776	5.41232309865691	5.03304948041063	5.4772481864841	5.65180425905554	5.09833895659434	0.354560539711163	0.351423378888696	0.739299452698803
Merged-chr6-15714719-2	chr6	15714219	15715219	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5942.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.97647357575707	3.857187842221	4.08688648390804	3.96824464671723	4.06553136266485	3.86255343364376	0.0121610338338346	0.980735626078546	0.995560772285461
Merged-chr13-23748089-2	chr13	23747589	23748589	+	667.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175664)	TTS (NM_175664)	1355.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	4.45292696490983	4.93911568340758	4.62026962542674	4.91661991936379	5.2954444435986	5.29255453489385	1.05564504992704	0.0127587574709397	0.119351398723097
Merged-chr10-41594630-4	chr10	41594105	41595105	+	942.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	MIRb|SINE|MIR	26589.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.46651359501656	5.72401709748571	5.89142247942462	6.3238493664616	6.54342134764427	6.04820325813528	1.0985162372686	0.000651003852064277	0.012943543255093
Merged-chr14-52098575-4	chr14	52098065	52099065	+	854.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	5456.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	4.47995167884435	4.23618759644355	4.41150300344043	4.32941280954953	4.29666834344493	4.51933301086683	-0.000484717653404634	0.999137547789137	0.999864283693757
Merged-chr11-69673817-2	chr11	69673317	69674317	+	959.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 10 of 10)	intron (NM_030702, intron 10 of 10)	-1394.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	3.65184391928838	3.58474346352235	3.7950999836186	3.37856916909141	3.65106738075717	3.71643245268581	-0.297407051643031	0.602024704360241	0.882187830872038
Merged-chr2-116973990-2	chr2	116973490	116974490	+	695.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73838.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	5.69020710254272	5.57066362870696	5.63378269536685	5.85252689850308	5.54585372379198	5.77434916845386	0.169254566354415	0.598261679705712	0.880699693383778
Merged-chr2-75705361-4	chr2	75704849	75705849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	-686.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.73596887070198	7.90016849654617	7.77204326094191	8.10687229709062	8.31680950420019	8.06298434367924	0.522263593572789	0.0177351627051087	0.149136676944586
Merged-chr2-91476364-4	chr2	91475872	91476872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001145857, exon 9 of 12)	exon (NM_001145857, exon 9 of 12)	18841.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	6.35204571495961	6.34062928482289	6.12753324496057	6.02947125931326	5.96794450016772	5.88058912964416	-0.545127095759875	0.0582914466174207	0.312017670642801
Merged-chr8-70805075-4	chr8	70804579	70805579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3370.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	5.43523877587051	5.23007642347538	5.56314207847456	5.40003993643712	5.42901400529121	5.54366392737509	0.0917892676046465	0.787374452920842	0.94877064431094
Merged-chr8-34145297-1	chr8	34144797	34145797	+	914.5	f1_balb.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	1442.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	4.04905307323067	3.90564087838283	3.95182961400348	4.23303620053168	4.27702407711548	3.86292774110963	0.511282651927068	0.312551506763796	0.707190484237326
Merged-chr8-83103201-4	chr8	83102755	83103755	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62097.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	7.14289542138708	7.22428843479313	7.13721129901065	6.72728229551775	6.82192728089842	6.97629633552003	-0.503276143761147	0.0387079372553621	0.243978546431312
Merged-chr17-33394682-4	chr17	33394185	33395185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009542)	promoter-TSS (NM_009542)	-48.0	NM_009542	22643.0	Mm.4417	NM_009542	ENSMUSG00000055240	Zfp101	AI316498|AI325003	zinc finger protein 101	protein-coding	5.41810369142929	5.50178682853794	5.46569577959592	5.80427449943896	5.6823364958596	5.55842790421931	0.426527842127246	0.185327393946373	0.569470877644115
Merged-chr11-69917269-2	chr11	69916769	69917769	+	872.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001357906)	TTS (NM_001357906)	3235.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	2.83964923905459	2.83149641824202	2.95434179628056	2.9677477304259	2.96551304601486	3.25112713200759	0.893364821229699	0.196084831335203	0.583875846183064
Merged-chr13-47193900-4	chr13	47193411	47194411	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170643)	promoter-TSS (NM_001170643)	-92.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.68979067836254	6.05803645827274	5.98329656646517	5.59071161474147	5.78509208340514	5.43325752375855	-0.532314667252687	0.110781381564845	0.444841551070303
Merged-chr12-24594821-3	chr12	24594275	24595275	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	14056.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	2.94906846465594	2.99769491163015	3.26643783774906	3.04654680371744	2.82113169033727	3.33677859031702	0.0234774208578109	0.97360111059771	0.994039095662068
Merged-chr3-108726575-4	chr3	108726069	108727069	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-4270.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	3.970193148848	3.61348344232128	3.50399649510971	4.05469692858454	3.98813806103345	3.80849700337161	0.746150169585608	0.188460381790771	0.574089449187164
Merged-chr2-25357941-4	chr2	25357442	25358442	+	969.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1610.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	3.50840056397143	3.31069623463429	3.54184903617853	3.22356083470549	3.24208002824903	3.7095868347459	-0.195007562032471	0.757554259490994	0.939883186830738
Merged-chr12-110508106-4	chr12	110507611	110508611	+	840.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	MIRb|SINE|MIR	22372.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.38563221476204	4.51227448865014	4.21531558480294	4.17498891043742	4.13921422083977	4.28393637507121	-0.509155152823958	0.268484917199463	0.665656356793091
Merged-chr11-69097131-4	chr11	69096612	69097612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	8.33228535344679	8.06326517559191	7.97771900387367	7.94772532428351	7.98405486354577	7.86769206115137	-0.285560552710152	0.203952882011025	0.594202340324761
Merged-chr7-78895853-4	chr7	78895352	78896352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162939)	promoter-TSS (NM_001162939)	-75.0	NM_026531	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	5.38972067706902	5.56074768348446	5.55631751403357	5.52393688110828	5.20144286475198	5.29065335478461	-0.308829589588584	0.369845754816937	0.754352114878
Merged-chr2-59207823-4	chr2	59207303	59208303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46953.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.67710100467047	6.52599584274116	6.24192945126923	6.54368591652914	6.67795735044285	6.1918246834745	-0.00622917613108377	0.98348102050653	0.99633715643266
Merged-chr8-107291507-4	chr8	107291008	107292008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-1962.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	5.93952125627067	5.41374283300895	5.28397812986698	5.66156121248904	5.6402055721373	5.24404391159028	-0.096136373761124	0.802612263245712	0.953277491187878
Merged-chr14-122376818-4	chr14	122376318	122377318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029556, intron 4 of 7)	intron (NM_029556, intron 4 of 7)	74297.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	3.96326253604184	4.18578702305789	4.18057476697476	3.95151950696297	4.42908734014731	3.90228224918625	0.054497089557599	0.917558991371478	0.98166801957001
Merged-chr7-90028685-2	chr7	90028185	90029185	+	730.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110364)	promoter-TSS (NR_110364)	-474.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.18080343825345	6.40065351068314	6.07982890172387	6.35592652984326	6.62136325633338	6.20840963526607	0.30146600408319	0.310950759038964	0.706214776267546
Merged-chr5-122285842-3	chr5	122285340	122286340	+	955.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	1442.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	4.59037735875613	4.22818210258823	3.9310399837545	4.57185397677962	4.39268921398966	4.26757345842363	0.336039197177435	0.509344938847701	0.84026772146894
Merged-chr7-80015563-4	chr7	80015067	80016067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9247.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.55197887900415	5.5576836147104	5.93863581641867	5.81195508313649	5.87411773086743	5.78619645458755	0.264730332704962	0.410705774979452	0.78357384551602
Merged-chr15-59730314-2	chr15	59729814	59730814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64645.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.25509764263969	3.77885448364332	3.922260850839	3.9934601768443	3.74439335141525	4.35068327238272	0.11990429018242	0.829804975584173	0.960134151531511
Merged-chr18-66477445-6	chr18	66476898	66477898	+	884.319458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	18794.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.49551835591072	7.67420988906823	7.73585994065923	7.89576602707996	8.19830998389546	7.75747915748937	0.48124789680916	0.0464035973089744	0.272603115284181
Merged-chr5-23844649-1	chr5	23844149	23845149	+	724.666687	f0_c57.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-504.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	5.78972509423706	5.77701828158297	6.11170337635164	6.50104535899633	6.68036832490547	6.82220036818815	1.30117304564139	8.04114283314756e-06	0.00033136457430664
Merged-chr18-12230163-4	chr18	12229642	12230642	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	6244.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	5.90119837835281	5.79051810050561	5.69906302396071	5.19060858459261	5.14838086427527	5.26178208925708	-1.16822546574375	0.000393076764223779	0.00866268299439819
Merged-chr1-165653700-3	chr1	165653239	165654239	+	756.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	L2b|LINE|L2	-19198.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.71546175696148	3.83931923821584	4.18559264795453	3.62867295540045	3.46629952616056	3.99615296694817	-0.688161655712402	0.238020131824135	0.634592122414717
Merged-chr13-113949953-4	chr13	113949415	113950415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 3 of 4)	intron (NM_172595, intron 3 of 4)	155407.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	6.91766312664042	7.14371046217448	6.86935320606949	7.09191307703734	7.28636349858284	6.86735106665979	0.175442385347794	0.505277006478826	0.838055364884185
Merged-chr9-77828708-4	chr9	77828168	77829168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	74133.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	6.71296398428549	6.46148955783917	6.32662216596665	6.54159845342833	6.65424944542603	6.46393652425915	0.0681909510728811	0.805819140095855	0.954003424185974
Merged-chr11-5444414-3	chr11	5443901	5444901	+	873.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001080924, exon 1 of 9)	exon (NM_001080924, exon 1 of 9)	446.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	5.1830638164746	4.88959315383482	5.13435093582436	5.622323037368	5.09557742932247	5.23246155258174	0.53611370696896	0.166097196337959	0.541194161193161
Merged-chr4-119969412-3	chr4	119968902	119969902	+	635.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	154724.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.71454121315464	2.8468528494076	2.96797499246929	2.67193077437157	2.89656968105897	3.35975578992398	0.733208553413197	0.341126583058524	0.730686899066382
Merged-chr10-30656634-2	chr10	30656134	30657134	+	625.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	-767.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.88119801154999	5.02500677420739	4.99408289914135	4.94020747340182	5.17770195476857	5.0235520014412	0.19300935789702	0.605922786936573	0.883713511453031
Merged-chr4-59878230-3	chr4	59877739	59878739	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	36817.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	4.50538534827338	4.6912703651963	4.78042444385649	4.45846359104345	4.34634733488563	4.773160261003	-0.324689597252668	0.458333905445113	0.812965991010146
Merged-chr9-5308752-4	chr9	5308242	5309242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-107.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	7.66680176835396	7.90636186615073	7.43570798978433	7.55406662995751	7.86694086137213	7.39269389041198	-0.089726123882366	0.734169321368349	0.932325051544019
Merged-chr6-134922964-4	chr6	134922464	134923464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	2563.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	6.42953365864773	6.57536999608722	6.42795441958703	6.53757726127426	6.90348267524911	6.91779332284467	0.499292756971335	0.0681796432017011	0.341651895496422
Merged-chr9-21513658-2	chr9	21513158	21514158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3424.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	2.3130409068381	2.51011325097189	2.61136106487244	2.59237199108468	2.39897114360813	2.91905840036024	0.952645021593172	0.258729212356382	0.656251800083823
Merged-chr15-7088941-3	chr15	7088422	7089422	+	748.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40650.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	2.0924437000278	2.24153135541691	2.11916374375957	2.40083805951053	2.10732178779517	2.39599156616207	1.04589149125646	0.249297241460692	1
Merged-chr17-35915189-1	chr17	35914689	35915689	+	839.0	f1_c57bl6.idr	intron (NM_001361455, intron 1 of 5)	B2_Mm1t|SINE|B2	1251.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	4.19489294957808	3.93069850071074	4.25399090483059	4.44669545797936	4.1458692801783	4.27723476204577	0.454509937258616	0.345846167605628	0.734290015947412
Merged-chr6-87887845-4	chr6	87887333	87888333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017477)	promoter-TSS (NM_017477)	-107.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	6.27125230064511	6.48070671243855	6.29614615809959	6.42094076678734	6.2881564807231	5.86997911255791	-0.215592273117075	0.479974934333736	0.824450336912929
Merged-chr10-8240857-4	chr10	8240365	8241365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277960.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.27379656603585	4.91966747611859	5.4062817181248	5.4251273626555	5.19889617785447	5.5241891596215	0.349956349358672	0.350582413477802	0.738596934645462
Merged-chr3-103802383-4	chr3	103801868	103802868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	-761.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	7.42802783737926	7.34514612247011	7.45070982052557	7.27947243575745	7.74057071954832	7.36931110561673	0.119328007057625	0.634969058965026	0.896393504194572
Merged-chr6-54163024-4	chr6	54162538	54163538	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-101820.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.59994012057343	3.35244138997146	3.50562355368787	3.28439501212114	3.14688569061948	3.77327769704008	-0.24609554669082	0.704637757422741	0.922488097794635
Merged-chr9-41072312-4	chr9	41071807	41072807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	7199.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.87729438508252	4.92815247189835	5.44796811207194	5.36172225558134	5.68486424197011	5.59131242628546	0.9153660998275	0.0167466638047493	0.143539293824415
Merged-chr8-70350435-2	chr8	70349935	70350935	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 1 of 23)	intron (NM_030680, intron 1 of 23)	2844.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	2.6096006077942	2.78421794817683	3.43092441433255	2.9549163103669	2.94488956391279	3.35273971327705	0.428408567804764	0.604820421932552	0.883226183914895
Merged-chr7-44985677-4	chr7	44985185	44986185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	735.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	6.40584998118758	6.41980354909827	6.38645820825509	6.26676860937464	6.42523048428642	6.46432534435546	-0.0297390362177209	0.911694764832094	0.980159546174906
Merged-chr2-22866061-3	chr2	22865553	22866553	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-29469.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	3.44709757033288	2.88328700341734	3.10562012377982	2.86640256374767	2.99906739578791	3.17827204818909	-0.65943763467724	0.361906511550251	0.74753801781726
Merged-chr10-118102174-4	chr10	118101732	118102732	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39555.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.86574882432506	6.35709206667343	6.70977729392467	6.8429081877143	6.73506600198766	6.63855627937175	0.131495620505599	0.64181100075587	0.899182569727776
Merged-chr1-65111151-4	chr1	65110613	65111613	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	RLTR33|LTR|ERVK	-7750.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	4.14215602938402	4.24205932033539	4.30767901766459	4.37412540490144	4.55673229028212	4.50319915780654	0.666630362485734	0.133819818594195	0.489097037875759
Merged-chr4-142020152-4	chr4	142019641	142020641	+	749.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	B4A|SINE|B4	2243.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	6.76907091861163	6.89634646714903	6.7687837696929	7.04330130082793	7.17271803025096	6.4131724665842	0.180129198268463	0.549146819862353	0.860215389264136
Merged-chr19-41319821-2	chr19	41319321	41320321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-55817.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.64908994676662	3.52952311704953	3.37668076078795	3.5306504038385	3.71347205493462	4.18544317874629	1.01528433578091	0.0964479138724207	0.414008757150678
Merged-chr2-166030388-4	chr2	166029868	166030868	+	988.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	37731.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.22693968731058	6.18649384957835	6.04763438681876	6.40605151111863	6.78190887747146	6.08554679755967	0.51390054068873	0.104614212499211	0.43165423949392
Merged-chr8-56286831-3	chr8	56286311	56287311	+	960.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7741.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.65671565981711	4.6046792615732	4.57201135155343	4.0459780707901	4.10548566854187	4.63780430343322	-0.86013271593495	0.0716647745198325	0.351203401746052
Merged-chr13-59002369-4	chr13	59001867	59002867	+	857.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	194670.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	5.29079189149554	5.43288355252396	5.41642101506207	5.97195748903589	6.16137510163201	5.68739207769597	1.07881785703563	0.00110274142118239	0.0194187569724042
Merged-chr4-138434702-4	chr4	138434214	138435214	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026689)	promoter-TSS (NM_026689)	42.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	7.36251026558368	7.55281970636793	7.30604973897901	7.68929267609197	7.71107140183054	7.48417683009051	0.32223899818022	0.168016135799472	0.544297707907434
Merged-chr7-64277123-3	chr7	64276627	64277627	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-10543.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	3.66491362939735	3.64825820849301	3.15516892770284	3.27990604442445	2.98378757085976	3.52326191309799	-0.894630124768516	0.20351072748913	0.593520052326085
Merged-chr10-75212071-4	chr10	75211569	75212569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145826)	promoter-TSS (NM_001145826)	-4.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	7.42221889200252	7.1177054614173	7.19231232516162	7.59770778946983	7.0261575046759	7.20108888807322	0.0675546379766022	0.806024862332319	0.954102910475772
Merged-chr6-86666788-2	chr6	86666287	86667287	+	723.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	2372.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	6.09189392860225	6.10798903092335	6.45030292101515	6.66768559609163	6.67749480041853	6.76738413954332	0.792682564734298	0.00412986033600421	0.0531864136880108
Merged-chr15-25773944-4	chr15	25773449	25774449	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001353141)	promoter-TSS (NM_001353141)	-64.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.64969141518777	3.50773310135637	3.71209084750016	3.42705309840552	3.23015452314075	3.57900833192297	-0.784608490591788	0.18708176451739	0.572020442060608
Merged-chr8-70343920-3	chr8	70343445	70344445	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 2 of 23)	intron (NM_030680, intron 2 of 23)	9334.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	3.17232507426482	3.29821471567506	3.66698853004713	3.15046568611584	3.09200715770275	3.59287642875802	-0.381830456498525	0.572037392906442	0.869773807126863
Merged-chr3-19068947-2	chr3	19068447	19069447	+	775.266663	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	94148.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	3.43884143180448	3.65625049818033	3.47208293149332	3.97082488253587	3.84297497110053	3.8197648163203	1.17699777413964	0.0345797150731143	0.227995953391735
Merged-chr8-43443077-4	chr8	43442576	43443576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85061.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	3.8752635462771	4.2593463286989	4.16581744375833	4.44298054790464	4.46499816583712	4.49780473632071	0.956635499954944	0.0431811422285932	0.260779248262214
Merged-chr7-101911429-2	chr7	101910929	101911929	+	830.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025605, exon 5 of 5)	3' UTR (NM_025605, exon 5 of 5)	-5070.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	3.49523445505738	3.7065921740495	3.95877045504365	3.35541382954252	3.36407695964942	3.75121093204306	-0.814363812469865	0.179817525992792	0.561345475440548
Merged-chr2-118111226-4	chr2	118110733	118111733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-31.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	4.47272760549039	4.46526392841564	4.15203635082331	4.17264109947166	4.22120549174741	4.53053885033944	-0.187554481517756	0.690537598631916	0.91790744775252
Merged-chr11-113335029-1	chr11	113334529	113335529	+	1000.0	f1_balb.idr	intron (NM_027216, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	-125360.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	4.77625000605257	4.54112504475298	4.63446328311507	3.73612007574535	3.39287682542515	4.00477142680595	-2.91533864935079	5.13682451267097e-07	3.00477830356114e-05
Merged-chr2-167477228-4	chr2	167476709	167477709	+	932.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_148929)	TTS (NM_148929)	-15436.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	5.58551401543219	5.55802562130777	5.69893588213384	5.64364619033918	5.56716910760421	5.54344028920425	-0.0445469467258083	0.888399157554742	0.97401529899353
Merged-chr12-84772103-6	chr12	84771562	84772562	+	820.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	1050.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	7.18055289617935	7.421165434634	7.2104841232431	7.47166894496646	7.88928273233713	7.31603250500511	0.462723895313892	0.0833452955584596	0.382030262371415
Merged-chr3-90322286-2	chr3	90321786	90322786	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19368.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	4.42387910393779	4.46308012893493	3.99956168328165	4.25454228606227	4.24372683795394	4.17159989225356	-0.264480598501074	0.584368110091845	0.874561879083458
Merged-chr17-32113672-4	chr17	32113167	32114167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22244.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	6.1285161798925	6.0468723153895	5.37238030740289	5.86648002757967	5.3174122564397	5.1033076045694	-0.767706288180742	0.0660174754565565	0.335347795471846
Merged-chr5-104459571-4	chr5	104459074	104460074	+	936.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008861, exon 1 of 15)	5' UTR (NM_008861, exon 1 of 15)	117.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	2.75686751956478	2.94240193654346	3.11768132570766	3.26404958587502	2.82799029563291	2.8245506512356	0.212978304022626	0.774171302701802	0.944321484608801
Merged-chr5-8056537-4	chr5	8056060	8057060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	18.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	6.84588974172762	6.7178836262588	7.00758864947799	7.06020793661554	6.81206783682164	6.66830144925142	0.00867915163588863	0.974065695528132	0.99422005073929
Merged-chr1-183298193-4	chr1	183297670	183298670	+	856.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	-877.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	4.87527970859695	4.71114662766718	4.80032568424929	4.8028879807049	4.76536318803612	4.86566640242709	0.025544446253157	0.947781287329616	0.988008807662239
Merged-chr17-47595707-4	chr17	47595210	47596210	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	2243.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	2.91629011191335	2.89416451898727	3.33462898197617	2.59306891440695	2.46634484318823	3.1478765516326	-1.23208294848852	0.36395572935184	0.749363529752999
Merged-chr7-24254725-4	chr7	24254258	24255258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018791)	promoter-TSS (NM_018791)	-36.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	4.28782262046654	4.28850243163255	4.73338065176536	4.27937507184313	4.10506810250323	4.7281879272227	-0.147223468547983	0.768411707268631	0.942871018290895
Merged-chr7-38267843-3	chr7	38267275	38268275	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025390, intron 2 of 6)	intron (NM_025390, intron 2 of 6)	3573.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	3.94571783247418	4.01942560021779	4.16515910638861	3.85550795911263	3.80603876872784	3.95867123761807	-0.527883096176378	0.294047389205729	0.69067311675456
Merged-chr13-20788207-4	chr13	20787702	20788702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5911.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	6.63985200592845	6.7504970636249	6.58728134798594	6.83766576397157	7.20237327965255	6.77938238335671	0.466113431312122	0.085026153487535	0.386129323574646
Merged-chr2-165854421-1	chr2	165853921	165854921	+	581.0	f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3752.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.54345559977778	4.30449902699711	5.00317292762616	4.47611831992327	4.34087057457341	5.0959513618726	0.0715438812413652	0.888284293528298	0.97401529899353
Merged-chr12-79628195-2	chr12	79627697	79628697	+	705.0	f0_balb.idr|f0_c57.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	296536.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.48523696816697	6.49529086030417	6.55601550202114	6.43765542675235	6.96359648323918	6.35405854192667	0.191901429558653	0.524477305629304	0.848720771062215
Merged-chr6-87130265-4	chr6	87129763	87130763	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25517.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	4.61542815460312	4.60629128776051	4.86594425603872	5.15311024465165	5.132339582692	5.10586823876792	0.977320330110015	0.0106310389944105	0.104945722226469
Merged-chr10-121498097-4	chr10	121497597	121498597	+	865.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21847.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.56168868925925	7.79481330956741	7.74403673300106	7.20453649629078	7.20179872529063	7.24624197845324	-0.715616462312713	0.00175095779424572	0.0278865803232838
Merged-chr11-116658009-4	chr11	116657506	116658506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163318, intron 2 of 4)	intron (NM_001163318, intron 2 of 4)	898.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	6.12001152376717	5.94154632755651	5.66183412375485	5.78796356372408	5.51054636593957	5.38730836186459	-0.639562899125653	0.0595586323616598	0.315867112802383
Merged-chr6-148533736-3	chr6	148533305	148534305	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80504.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	6.128327533443	5.88965325983364	6.14271649600777	6.00931540538918	6.11139946192659	6.33950366258344	0.170137196460225	0.569206795173741	0.8688875602138
Merged-chr5-125385363-7	chr5	125384855	125385855	+	870.7041019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019639)	TTS (NM_019639)	4662.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.81166185974523	4.08687736356621	3.97638088408058	4.44233854359696	4.56712511867274	4.54638589776294	1.52403147279097	0.00141461326955139	0.0236692420938734
Merged-chr10-117063896-4	chr10	117063419	117064419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-67.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	7.29068223175301	7.59788383685338	7.36458694083108	7.08929639797884	7.29986494270327	7.17888100526842	-0.344413416486318	0.15831308867714	0.530033214607791
Merged-chr13-101679558-3	chr13	101679058	101680058	+	728.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13072.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.72398721229723	2.96193227589275	2.96588601605781	3.00477294054372	2.82155429090597	2.97919950270371	0.228774809514687	0.746051458466386	0.936260355453809
Merged-chr5-129006408-4	chr5	129005904	129006904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	B3|SINE|B2	2168.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	5.85626957298022	5.88005077806876	5.95862105474511	5.99720165013451	5.94246139845145	5.99656098150063	0.143425952395945	0.62303950587548	0.891251075175817
Merged-chr8-126584441-5	chr8	126583944	126584944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8992.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.18496723469281	7.91172760155185	7.66432531625928	7.48041085508485	7.67460069520422	7.16415144712346	-0.68761660737795	0.010811943588665	0.106171995956492
Merged-chr2-25622031-4	chr2	25621531	25622531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109993)	promoter-TSS (NM_001109993)	-26.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	8.11478912270288	8.26217585078781	8.14593818991071	8.03056307334178	8.26876788205573	7.92311722465118	-0.123373763655015	0.580280180935603	0.87276455172875
Merged-chr18-39619503-4	chr18	39619008	39620008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132263.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.22488418792627	5.90590306641384	5.98641687668985	6.02988964244537	6.16654262998885	5.97666736765006	0.029883014567763	0.920697713430408	0.982463724790289
Merged-chr1-180971904-3	chr1	180971409	180972409	+	848.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 19 of 22)	B2_Mm2|SINE|B2	29391.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.92235680628127	5.55563061304222	5.55795398895868	5.67077397338733	5.87066228692668	5.59201773133105	0.0521140284746001	0.876333391203865	0.97129382175502
Merged-chr5-139790691-2	chr5	139790191	139791191	+	919.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-845.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	4.51860857439634	4.54737853016537	4.43324566088381	4.47840703498658	4.30223913400213	4.58346522146787	-0.136720106299065	0.752625601995431	0.938346259574037
Merged-chr18-25487078-4	chr18	25486611	25487611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362310, intron 11 of 12)	C-rich|Low_complexity|Low_complexity	192637.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.26738666609707	3.36984018093902	3.46240556193625	3.28263279244941	3.12272187464599	3.42687563843152	-0.360640416636922	0.560954081708449	0.865345431520729
Merged-chr4-110668222-4	chr4	110667666	110668666	+	838.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284190, intron 3 of 12)	intron (NM_001284190, intron 3 of 12)	270468.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	2.92669185060821	3.2129145934104	3.26658876454666	3.13644702255853	3.1373793182789	2.7872737979427	-0.47204574802641	0.51927854754912	0.845725113262126
Merged-chr15-89195308-2	chr15	89194808	89195808	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027081, intron 1 of 19)	intron (NM_027081, intron 1 of 19)	1166.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	3.80692717773126	4.05072038469574	4.18377594864895	3.69868395417269	3.93045735296025	4.55969880710523	0.253283412382739	0.661630926236245	0.906493864324557
Merged-chr4-129086304-3	chr4	129085807	129086807	+	641.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19223.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	2.43380913162535	2.3965458797993	2.58428843154388	2.30522294867039	2.35292722897422	2.65718810369446	-0.173116770097299	0.834534040767613	1
Merged-chr10-111676472-2	chr10	111675972	111676972	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82199.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	2.86402775251428	2.69939930969047	2.64769149765787	2.75111857192438	2.64973297590772	2.90532073856868	0.127798725550336	0.863810945658667	0.968269312109804
Merged-chr11-115535996-2	chr11	115535496	115536496	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133354, intron 1 of 3)	CpG	234.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	7.82835876706217	7.46643163706363	7.46630827117877	7.9023285431887	7.41731672452178	7.72377389132686	0.132316579154105	0.613553445948507	0.887299566026789
Merged-chr1-88247993-2	chr1	88247493	88248493	+	836.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 26 of 41)	ORR1F|LTR|ERVL-MaLR	20973.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.44208022242954	3.53437171106769	3.59100782156533	3.16929937245798	3.28278944680554	3.89500423516226	-0.137463542278577	0.834324548740257	0.961273502395445
Merged-chr9-61372295-4	chr9	61371802	61372802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-64.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	6.28089017066926	6.5218573746114	6.36419875810167	6.25480288874379	6.58261985915329	6.5839983950643	0.142883342854388	0.613482727360009	0.887273066396938
Merged-chr2-4453204-4	chr2	4452717	4453717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	52241.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.63424018618513	6.8607224535401	6.4922019461645	7.1611664943631	7.43215718118204	6.74905228104251	0.731596910653909	0.01364015505264	0.124585073723389
Merged-chr12-21370683-7	chr12	21370237	21371237	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	2895.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	6.75313784507	6.72577571185175	6.93585035446954	7.34899590075229	7.66251096435812	7.12878221852731	0.916192814742428	0.000566382634294821	0.0115792546030475
Merged-chr10-77515090-2	chr10	77514590	77515590	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133998, intron 1 of 5)	intron (NM_133998, intron 1 of 5)	723.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	5.34837570464367	5.33124271532138	5.0972329419015	5.50793051040048	5.20221642766241	5.01375047336298	-0.0155901443102049	0.966666919326616	0.992349609766636
Merged-chr2-59882573-4	chr2	59882076	59883076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028118)	promoter-TSS (NM_028118)	30.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	6.23320181158969	6.38339650165639	6.2820113288257	6.23751730184507	6.1126640477913	5.91687022658773	-0.335306008392963	0.243705971601225	0.64086208327192
Merged-chr3-97232532-4	chr3	97232014	97233014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5150.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	6.10960884671088	6.24404981622799	6.19557514431232	6.24960021766258	6.64803841023292	6.46865236464607	0.474328760773517	0.097668763314385	0.416781499454503
Merged-chr2-26917029-4	chr2	26916517	26917517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013677)	promoter-TSS (NM_013677)	-487.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	7.30780646028615	7.26128187163821	7.24071001174572	7.09743362928261	7.34994717795529	7.12691546754448	-0.101373509520488	0.670569082226148	0.910030698120682
Merged-chr8-106443786-3	chr8	106443285	106444285	+	667.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28446.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	3.63541192214266	3.68274052602337	3.46196105483395	3.84326431312738	3.42160927974529	3.59161651985335	0.0939980513605353	0.872379373368479	0.970261003150518
Merged-chr7-99467454-3	chr7	99466961	99467961	+	867.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028145, intron 1 of 6)	intron (NM_028145, intron 1 of 6)	1457.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	4.51684214672013	4.45961119976043	4.39025727643859	4.43811215696729	4.43943380926766	4.22497115383852	-0.206894013091959	0.638996579761614	0.897847437626511
Merged-chr11-50025644-3	chr11	50025184	50026184	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	CpG	353.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	8.04917179184361	7.9068983813977	7.98281109898214	8.1509064336592	7.66371260955088	7.67312729013891	-0.182574014024571	0.460980134607524	0.814802506471053
Merged-chr11-83658982-4	chr11	83658484	83659484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3600.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	6.7581906518967	6.49376485214651	6.64907765330649	6.47552431279879	6.6191314016701	6.70785206487671	-0.0572396567181668	0.829849597798413	0.960134151531511
Merged-chr7-6284784-2	chr7	6284284	6285284	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1796.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	5.72636976139436	5.65498370676265	5.76581823000021	5.47344052284105	5.62264086081588	5.2744429644011	-0.439007067453296	0.185538749380598	0.569742342637959
Merged-chr17-8905114-1	chr17	8904614	8905614	+	716.0	f0_balb.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55129.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.47477416044978	3.51325449097527	3.26087614343485	3.11421697787609	2.94654767724884	3.33330448122724	-1.23192533950058	0.0636518870703799	0.328767639677588
Merged-chr19-17356468-4	chr19	17356001	17357001	+	747.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	CpG	166.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.3227551907638	5.35078891084937	5.3258129302859	5.04109449627095	5.12153184382885	5.02250699899236	-0.545481046356343	0.120234673783954	0.463703920541859
Merged-chr8-123253099-4	chr8	123252589	123253589	+	883.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028200, intron 1 of 14)	intron (NM_028200, intron 1 of 14)	-1106.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	5.14937238011566	5.07488603575709	5.40706462584151	5.48841093860853	5.43671192029474	5.52617524298511	0.54534066709495	0.114930705385707	0.452587804955148
Merged-chr10-21827100-4	chr10	21826580	21827580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55104.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.07505592406511	7.04303199763061	7.37045432677466	7.29979280418402	7.35282066180325	7.06216344944469	0.131706750797268	0.601947090968978	0.882182850946645
Merged-chr15-99970772-4	chr15	99970253	99971253	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284522, intron 1 of 15)	RMER6A|LTR|ERVK	688.0	NM_001284522	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	5.32033643305791	5.71454090586933	6.04999024455763	5.7670311182438	5.77138928027504	5.7188655664166	0.0654271367414464	0.853448609794302	0.965687837146459
Merged-chr2-154548904-4	chr2	154548403	154549403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029305)	promoter-TSS (NM_029305)	-1.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	7.68889770634666	7.51485104623096	7.09659079496382	7.45508310639383	7.5242929902736	7.01335478024953	-0.156242962379693	0.583795518429755	0.874225271981634
Merged-chr17-34105028-4	chr17	34104544	34105544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-9735.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	5.12300655516105	4.89938206282015	4.98726164988174	5.46411475429629	5.63314263874864	5.87947339614114	1.29598958412551	0.000319655385142145	0.00733734766535383
Merged-chr5-105875596-3	chr5	105875106	105876106	+	896.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-962.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	6.61550855835284	6.73396564688767	6.49751473241868	6.14224175890478	5.87341776457821	6.07593141811705	-0.987496554128505	0.000457840907392371	0.00980340355694915
Merged-chr4-53095487-2	chr4	53094987	53095987	+	971.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 8 of 49)	intron (NM_013454, intron 8 of 49)	64408.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.91172955878106	2.90243829949951	3.09643477393606	2.99976085912971	3.01380865695785	3.4836782348418	0.92131746346456	0.186927149291723	0.571769078346716
Merged-chr14-20478958-4	chr14	20478452	20479452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110794, intron 1 of 12)	intron (NM_001110794, intron 1 of 12)	1181.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	5.35484058930465	5.57280836500207	5.59935683459443	5.30394872927731	5.45307905686209	5.13831154726225	-0.374768072833778	0.283643398285353	0.681376161050487
Merged-chr10-118879196-4	chr10	118878720	118879720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-10317.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.23241860180517	5.86877829039421	5.72050519897238	6.05452977034084	5.67906418300388	5.9124315403651	-0.143665470725006	0.666748454203075	0.908367417591988
Merged-chr13-69613300-2	chr13	69612800	69613800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145354, intron 3 of 18)	B2_Mm2|SINE|B2	1284.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	2.49190281234286	2.71309837580402	2.63450979748481	2.67597726669529	2.680420937107	2.76990543915691	0.496504991447654	0.512185938302691	1
Merged-chr5-31698559-4	chr5	31698062	31699062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153196)	promoter-TSS (NM_153196)	512.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	8.23160956103929	8.39915417884497	7.74709085567262	8.19520860489219	8.69928757744213	8.03181033122291	0.262185857817255	0.366251650194599	0.751283584197618
Merged-chr5-17855548-2	chr5	17855048	17856048	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	IAPEz-int|LTR|ERVK	-5756.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	5.48077584768405	5.54775862905891	5.27063965496643	5.33196244880198	5.6845492836881	5.712729050387	0.266024742081367	0.442373641250958	0.803209439640776
Merged-chr2-148877100-3	chr2	148876557	148877557	+	805.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1545.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	4.83380469148002	4.83959540137486	5.40093670156156	4.87295328433703	4.80670574067312	5.40952763051164	0.0127662194710398	0.976853603609273	0.994769134402338
Merged-chr19-55312011-4	chr19	55311516	55312516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025883, intron 3 of 10)	intron (NM_025883, intron 3 of 10)	4020.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	4.96953331616425	4.95802816429675	4.995414315825	5.75959271412543	5.68544310166857	5.70851092753943	1.47210828372314	1.39797448181226e-05	0.000535062836626652
Merged-chr4-134468357-4	chr4	134467852	134468852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019641)	promoter-TSS (NM_019641)	32.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	4.51591378919839	4.2483027458084	4.43003649652162	4.77452227841592	4.50315530967976	4.36260606321608	0.401647256347317	0.371456312100403	0.755590455851299
Merged-chr11-43748034-4	chr11	43747547	43748547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133795)	promoter-TSS (NM_133795)	-74.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	7.30992651754606	7.43988526719365	7.11748607701984	7.35658547225709	7.37245127157143	7.16235170294284	0.00400910118922365	0.986843538399588	0.997112269218111
Merged-chr10-30785019-2	chr10	30784519	30785519	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	18307.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	2.50182350712984	2.54249227447784	2.71321712707913	2.64433719176289	2.76798920650609	2.90425459335385	1.04724027320589	0.170361343673384	0.547757899624212
Merged-chr14-31026311-2	chr14	31025811	31026811	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 4 of 30)	intron (NM_001359857, intron 4 of 30)	6606.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	3.31716057099075	2.96616917660211	2.93748842909007	3.11324233257906	3.13205285391514	3.13522860682187	0.154442454504431	0.820989096995052	0.957917721861197
Merged-chr19-11037739-2	chr19	11037239	11038239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	12827.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	4.17070411275241	4.27013016779611	4.46865240388002	4.56708826215092	4.62194230337178	4.31600123808408	0.556987976557729	0.216952795481712	0.610573232985264
Merged-chr12-110696449-4	chr12	110695939	110696939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010480)	promoter-TSS (NM_010480)	-44.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	8.34742963878206	8.45100103348959	7.93353001276068	7.9661006619618	7.97378995412903	7.96600239431605	-0.425889770323234	0.0716800054532504	0.351243904052711
Merged-chr9-86544749-4	chr9	86544250	86545250	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 33 of 38)	intron (NM_177208, intron 33 of 38)	27092.0	NM_001163746	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	3.5316168714492	3.66892023144191	3.60141033212055	3.849465378574	3.95648095649766	4.15932648080149	1.25505329655826	0.0201423831633979	0.162262311768808
Merged-chr11-116869416-3	chr11	116868919	116869919	+	884.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15419.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	6.96810198239894	7.03529780041348	6.79382739279384	6.8485524771093	6.97039399015415	6.36412374942197	-0.267007615770251	0.353205012303824	0.740535792477092
Merged-chr9-104260533-2	chr9	104260033	104261033	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	intron (NM_001359740, intron 1 of 56)	2397.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	3.51335914992617	3.51397125648407	3.76485617087628	3.79701424352655	3.74914859060693	3.9763544945445	0.820741031977972	0.13427474522473	0.489993860307513
Merged-chr13-52236333-4	chr13	52235835	52236835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	139594.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.44812698083699	6.43248251905445	5.89772119972787	6.49251407847359	6.33620550693744	6.13327150501152	0.0601798097161535	0.848468298719853	0.964356989789491
Merged-chr10-3840097-4	chr10	3839626	3840626	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-32541.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	3.37843309798568	3.48417896268705	3.7122178188724	3.86319350150032	3.93875723286415	3.9304416468489	1.32164963722797	0.0170276549772127	0.145048844732178
Merged-chr4-124707892-2	chr4	124707392	124708392	+	785.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010213, exon 6 of 6)	exon (NM_010213, exon 6 of 6)	-6969.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	3.54901938108037	2.97178406598946	3.64527341254103	3.22449306972726	3.13101761301265	3.29872687169153	-0.78954174785174	0.253960649161182	0.651117231535132
Merged-chr1-172633062-4	chr1	172632526	172633526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026725)	promoter-TSS (NM_026725)	-52.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	8.13097648687046	8.11751328837612	7.83499625788073	7.98281190275125	8.24247694033385	7.83154583530822	-0.00325249336385356	0.989135284782904	0.997527134050224
Merged-chr2-93841548-2	chr2	93841040	93842040	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_183220, intron 7 of 14)	intron (NM_183220, intron 7 of 14)	8259.0	NM_183220	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	2.49919906711879	2.3927718466755	2.54494736715436	2.37241492818761	2.15623033857007	2.49404100476111	-0.876191824336933	0.311223927747848	1
Merged-chr5-125074698-4	chr5	125074202	125075202	+	900.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 14 of 46)	intron (NM_011424, intron 14 of 46)	71227.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	2.86555225303525	2.81442823881492	2.92478863732209	2.63412677911297	2.55395245743439	2.93911308026674	-0.81673570988326	0.281650342628138	0.679744806955422
Merged-chr6-113850023-4	chr6	113849515	113850515	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	41524.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	2.86503644845297	2.88024973784159	3.28909454440427	3.00964025095868	2.64363174896576	2.78696407251272	-0.959268313282648	0.206535545866288	0.597141275948059
Merged-chr4-45972256-4	chr4	45971754	45972754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146142)	promoter-TSS (NM_146142)	-43.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	7.00155665804335	6.40004957223646	6.60457337588822	6.88099753908348	6.24201529074294	6.39006246062108	-0.255641465395673	0.440243327028344	0.801710731755548
Merged-chr13-101694130-3	chr13	101693701	101694701	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-1571.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.71844239085072	3.55573985064634	3.63877904081681	3.64230331330134	3.38541794531622	3.373361285808	-0.595149556540234	0.305969499081477	0.702020471196356
Merged-chr9-49051604-4	chr9	49051084	49052084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3997.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	5.9749922491655	5.98547343049394	5.86810648546134	4.92894637061162	4.77260142795371	4.97473559203894	-2.10836323430925	9.78143899457522e-10	1.08230581896358e-07
Merged-chr5-122051673-4	chr5	122051188	122052188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	6.34498586618262	6.65361298998607	6.12480691587262	6.44398427006945	6.34967249414038	6.23024479821512	-0.0943949828886284	0.75153731038764	0.937886504040509
Merged-chr2-84504480-4	chr2	84503991	84504991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046046, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	2382.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.35421584835812	5.53271305786064	5.09310084963684	5.7548197511739	6.08737996511301	5.73266989861104	0.97233375533105	0.00581445810387134	0.0681805848234113
Merged-chr7-100707651-1	chr7	100707151	100708151	+	928.0	f1_c57bl6.idr	intron (NM_001362170, intron 1 of 7)	intron (NM_001362170, intron 1 of 7)	1016.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	2.82562627733581	2.68684159863115	2.91463476415232	2.67726893852442	2.69402758509603	2.86975521895709	-0.327900696722493	0.65349864309047	0.903421138732039
Merged-chr4-3783565-2	chr4	3783065	3784065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B3|SINE|B2	52090.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.25108006091518	3.13611752164178	3.37386862081043	3.25552280027209	3.30813226773776	3.7430638148678	0.74951791410458	0.24046940950577	0.637542024844123
Merged-chr7-81548956-3	chr7	81548430	81549430	+	793.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172904, exon 7 of 13)	exon (NM_172904, exon 7 of 13)	18051.0	NM_172904	244091.0	Mm.38773	NM_172904	ENSMUSG00000038663	Fsd2	9830160G03Rik|Spryd1	fibronectin type III and SPRY domain containing 2	protein-coding	3.36878259377457	3.31864562792488	3.37078075322932	3.94614178175353	4.04884486098036	3.8870663948326	2.2001094152258	0.000141412361648879	0.00378226929864349
Merged-chr11-106819671-4	chr11	106819172	106820172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025481)	TTS (NM_025481)	30420.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	7.1502625643958	7.06909137178623	6.66980405349041	6.15853806740905	6.5671222082944	6.15952113414589	-1.04799206101148	0.000530944470083261	0.0110034439518525
Merged-chr10-86929153-4	chr10	86928675	86929675	+	947.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 25 of 68)	intron (NM_138673, intron 25 of 68)	78767.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.22213298042869	4.0986635199084	4.21285762649768	4.21370492628633	4.00193721386667	4.14280269195575	-0.16763553316905	0.72348517134707	0.929080239793919
Merged-chr12-3343432-2	chr12	3342932	3343932	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-21700.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	4.07988140292573	3.87119123901568	3.98676948493509	3.92585793726188	3.82479757035972	4.05525288482827	-0.153642956479663	0.760934128548022	0.941051201929548
Merged-chr4-5644122-4	chr4	5643621	5644621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173426)	promoter-TSS (NM_173426)	31.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	4.53398056083514	4.38646710039424	4.56810935041098	4.0831792777999	3.82747666560044	4.47804967151057	-0.946207915180973	0.0600649827277846	0.317265732420079
Merged-chr8-25018022-4	chr8	25017505	25018505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027194, intron 1 of 3)	intron (NM_027194, intron 1 of 3)	794.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	7.36572442783881	7.55810925045441	7.33947770007318	7.26336302177762	7.51987280724146	7.27038609309679	-0.095781666219986	0.690664421983636	0.917915728386653
Merged-chr7-141550588-4	chr7	141550074	141551074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10717.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	5.82039028982511	5.884579899601	6.30012670186461	5.69404351797863	5.68519271301597	6.04933699419979	-0.348949356330842	0.295377984066277	0.692253732023816
Merged-chr15-60825002-4	chr15	60824526	60825526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	54.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	6.19687107750691	6.1268414779416	5.90695784922904	5.81435886653184	5.88338380992696	5.94421912028522	-0.369018901781156	0.215153680465535	0.608503802392494
Merged-chr2-129314552-1	chr2	129314052	129315052	+	622.0	f1_c57bl6.idr	Intergenic	Intergenic	-4580.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	5.04743715342099	4.6604181937764	4.84053130621619	4.8650400004343	4.90080050273189	4.90605873076806	0.0664999077317094	0.866835879088305	0.969114221403526
Merged-chr15-27629134-2	chr15	27628634	27629634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	1559.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	3.44359255471701	3.69968757829267	3.24627368917237	3.5928189798511	3.4301906334722	3.49857766847621	0.0813602927324665	0.894489909086354	0.975551371736405
Merged-chr18-38186423-2	chr18	38185923	38186923	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23339.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	4.19329214377988	4.02399400928831	4.13753060442693	4.38848749280806	4.28078558232834	4.42834229485046	0.665405742987581	0.148451957601231	0.513997606860986
Merged-chr6-72147090-2	chr6	72146590	72147590	+	707.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 5 of 7)	exon (NM_011375, exon 5 of 7)	-23893.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.5470710983287	3.51589147329956	4.00932520231933	3.57529371210957	3.61130732586372	4.11816694677985	0.265491745362873	0.660393672515353	0.905944150044841
Merged-chr13-52189720-4	chr13	52189198	52190198	+	993.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	92957.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.07731825115834	4.06313795935217	4.17303781682725	4.0154003966948	4.02272890425648	4.19570777149177	-0.0787323142720434	0.86938166398864	0.969788171765313
Merged-chr16-85051462-2	chr16	85050962	85051962	+	687.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	79251.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	2.37279225681654	2.44657582322499	2.37326069329029	2.55499839244602	2.63556244789312	2.70443177249021	1.41361749507644	0.0804198827957618	1
Merged-chr10-128272071-2	chr10	128271513	128272513	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019963, intron 1 of 23)	intron (NM_019963, intron 1 of 23)	1515.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	4.67026398102802	4.67237376414775	4.81753192634236	4.97397693157235	5.08218030381921	5.15858412827731	0.789621647565401	0.038678679543654	0.24385327833523
Merged-chr12-4842253-2	chr12	4841753	4842753	+	688.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	-658.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	3.68422989442648	3.63685829207171	3.77613168328062	3.64388648340571	3.23020618091096	3.6437236008238	-0.652473444409647	0.273250338898259	0.670498796786974
Merged-chr18-62111254-3	chr18	62110816	62111816	+	844.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68665.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.1564520959134	5.42336181923302	5.02731691202266	5.86213274299737	5.6059395566041	5.31154491336924	0.763061728512641	0.0412311438212303	0.253512865335231
Merged-chr13-64281158-4	chr13	64280592	64281592	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-6104.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	4.46673767471839	4.69002005701249	5.01801818748119	4.23762222267431	4.44635941238499	4.51171842625399	-0.81157500486925	0.0749349481758827	0.360332129439369
Merged-chr9-65543672-2	chr9	65543172	65544172	+	825.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	36415.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.90110561708889	6.73191632143488	6.83855664560242	6.54154585848317	6.9427230713996	6.80828302816688	-0.0701851448020398	0.792350193151615	0.949929758256028
Merged-chr2-150840320-4	chr2	150839818	150840818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	2252.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	8.14451286453958	8.1636980630583	7.83731133867943	7.97361822318919	8.36622666458703	7.83354892062568	0.0365270435439893	0.885916272771025	0.973636976161493
Merged-chr6-146162794-4	chr6	146162295	146163295	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 52 of 56)	intron (NM_019923, intron 52 of 56)	228673.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	4.26142407703126	4.34456828122041	4.04098753486618	4.2764310725995	4.29823034287533	4.25748633785966	0.128214749407064	0.782951535789267	0.946833581227703
Merged-chr18-46198963-4	chr18	46198481	46199481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170855)	promoter-TSS (NM_001170855)	-163.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	5.45584958960645	5.11724192177498	5.33788817729948	5.77498195084501	5.74698488647322	5.60978283090424	0.773497665732557	0.0216725222943916	0.170350201688243
Merged-chr1-45912929-1	chr1	45912429	45913429	+	684.0	f0_balb.idr	intron (NM_016917, intron 5 of 7)	URR1A|DNA|hAT-Charlie	12665.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.89931266892938	5.70277470169545	5.95981760776758	5.99837753245565	6.02070039775203	6.06529737698713	0.307045728846031	0.302597887722537	0.699236684703777
Merged-chr5-125368608-6	chr5	125368105	125369105	+	772.230591	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	21412.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.54422369696039	3.510265671825	3.74723593955733	3.66308912077343	3.65125232165332	3.66416693315292	0.215310901690855	0.696268969660667	0.919440123947475
Merged-chr7-143757120-4	chr7	143756633	143757633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9860.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	2.76474003559813	2.53048298716406	2.87351528239608	2.58258689289504	2.57638764287769	2.64532108698919	-0.697741234396418	0.366131402459815	1
Merged-chr3-32400111-4	chr3	32399574	32400574	+	925.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34409.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	4.617884174488	4.59751373336616	4.76569301994621	4.60274380541223	4.70319526266623	4.83031617807442	0.129440331200336	0.749978368512092	0.937476275940627
Merged-chr11-32912013-3	chr11	32911505	32912505	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-87411.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	2.9242195632922	3.09222633024666	2.94441646724077	2.36657260845275	2.27965393656344	2.43518909353709	-6.25781232005252	2.53133337853575e-06	0.000122958078085933
Merged-chr9-59728102-4	chr9	59727577	59728577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20313.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	7.90554976917625	7.93052579346098	7.78618183698274	8.07301617037918	8.17675457428594	7.82532160288658	0.229870839534213	0.307265731024737	0.703355349301412
Merged-chr16-91002369-4	chr16	91001851	91002851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	8744.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	8.16289751555864	8.10522124756815	7.70828666184515	8.20764985223243	8.52572119948326	8.04917110985359	0.377794636194196	0.138703210908821	0.497659297714682
Merged-chr9-8017436-3	chr9	8016932	8017932	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12836.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	3.7963020802741	4.10678977830623	3.74189038795388	3.1592476898509	2.8515082413641	3.24325708168356	-3.81746610836552	2.77807229103394e-06	0.000132620676530322
Merged-chr14-40930116-2	chr14	40929616	40930616	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	L1MB2|LINE|L1	18093.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.6552664527829	4.65356612858235	4.70228890450246	4.42015017204107	4.42883388099968	4.30109855730668	-0.691840415141898	0.103168122000278	0.428296315983601
Merged-chr1-131084427-4	chr1	131083924	131084924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13419.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.91466934080907	8.14157516399231	7.82944397715981	7.87958652354151	8.05531654797609	7.74707486695919	-0.0953143482272099	0.68196217196504	0.914908045004202
Merged-chr9-44605871-2	chr9	44605371	44606371	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357703, intron 1 of 13)	intron (NM_001357703, intron 1 of 13)	979.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	7.32866627250725	7.38640140695324	7.26877073553989	7.40073116821984	7.53216697006655	7.53819185207373	0.23585189862307	0.297219347973655	0.69386498175224
Merged-chr5-64410890-4	chr5	64410348	64411348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57094.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.0886976918006	5.96788207304341	5.89264385967523	5.77857534323199	5.6550905029921	6.00025336338115	-0.323983393147691	0.293958239584471	0.690483209105257
Merged-chr7-118849147-3	chr7	118848623	118849623	+	785.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	6490.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.73309312795017	3.80137559296583	3.68222241778175	3.88341709414793	3.49012091845059	3.9046351237833	0.0759858772553041	0.891887276327343	0.974942585822634
Merged-chr12-86147462-3	chr12	86146960	86147960	+	947.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 4 of 7)	L2b|LINE|L2	-21881.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	3.1069679987949	2.75394080426323	2.95165294799651	2.80825684120932	2.6750571068973	2.64546142844445	-1.20520907001304	0.111462055321549	0.445975007096497
Merged-chr4-148592164-3	chr4	148591785	148592785	+	820.1904910000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009272, intron 2 of 6)	intron (NM_009272, intron 2 of 6)	772.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	4.59953944711772	4.41881173208142	4.50673097195429	4.52384760320151	4.56521367036685	4.15284995861412	-0.178707877908167	0.694031856691267	0.919144532112777
Merged-chr18-68154313-4	chr18	68153801	68154801	+	873.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-73645.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.82938303264552	4.17001310245518	3.62918338102241	3.54338877401755	3.49168931862445	3.4046749151795	-1.43935605295042	0.0153968252502587	0.135098495773861
Merged-chr18-12760912-4	chr18	12760405	12761405	+	864.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19550.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.60689884184808	4.96177362079115	5.10388902693765	4.80669042313495	4.61813973585188	5.0393490081515	-0.175274601340566	0.679105490618811	0.913598966280417
Merged-chr16-17205182-4	chr16	17204687	17205687	+	861.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2948.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	3.96984525080996	3.59136796651291	3.69704637819592	4.33548607990945	4.11592848970551	3.82718578372686	1.04926955128703	0.0582426619817245	0.311856848016431
Merged-chr5-122643183-2	chr5	122642683	122643683	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	-728.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	3.62211505214708	3.27680334890476	3.36955433330483	3.57627363208917	3.1308443491873	3.49752858956548	-0.0787254727882093	0.902329514268817	0.977439591001363
Merged-chr10-59879042-4	chr10	59878525	59879525	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	-566.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	5.92502828211593	5.65747951718703	5.95468218841576	6.31216096993887	6.33639046970824	6.312490799531	0.814125761563868	0.00531458878551194	0.0638063120342929
Merged-chr10-4111929-3	chr10	4111445	4112445	+	989.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	101175.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	2.3153620510178	2.17887182773652	2.42092882155102	2.39315997263083	2.14460883087357	2.16449821192083	-0.452878671089734	0.608825330780128	1
Merged-chr4-145215525-4	chr4	145215027	145216027	+	954.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20522.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.59286832780764	5.31488262298942	5.70567439166272	5.60930211615011	5.51439880673168	5.6379047995229	0.0852917576116506	0.798949614719371	0.952142593941544
Merged-chr14-45676823-4	chr14	45676324	45677324	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-18681.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.79694037456829	4.38340129881802	4.92574622100953	4.82817558237105	4.67975542989021	4.69644172469585	0.0527311856024255	0.902818981907092	0.977587864329359
Merged-chr7-24316737-4	chr7	24316227	24317227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199321)	promoter-TSS (NM_001199321)	-61.0	NM_001199321	22756.0	Mm.295762	NM_009568	ENSMUSG00000074282	Zfp94	-	zinc finger protein 94	protein-coding	5.10894259649311	4.97202632063313	5.63249368923657	5.17329536463928	5.08903901206595	5.40791811124836	-0.0674507878293627	0.865857939164573	0.968641478520565
Merged-chr1-59237813-3	chr1	59237306	59238306	+	944.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-575.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	7.15237992014887	7.60623958074506	7.05361071549338	7.17040960142551	7.49303225755274	7.09811830646953	-0.043520001799134	0.877513050612589	0.971635702815161
Merged-chr9-106319309-3	chr9	106318811	106319811	+	710.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	38250.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.8003170739791	4.93215282748557	5.11699632673309	5.58107720534024	5.60676570910121	5.70326157886916	1.37286441044412	9.29114623570206e-05	0.00266585412406999
Merged-chr6-129402637-4	chr6	129402142	129403142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019985, intron 4 of 5)	intron (NM_019985, intron 4 of 5)	5345.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	6.05542549680363	5.52767884421207	5.83579075277322	6.0408968617497	5.89672754076508	5.92180439328223	0.228047492387766	0.485114219591697	0.827336504644498
Merged-chr19-16064498-9	chr19	16064007	16065007	+	837.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68324.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.50747993229513	4.17337406677017	4.28279141311649	4.67468080790532	4.53695409676062	4.57114726865234	0.662293246128904	0.136015813720145	0.492905159738987
Merged-chr10-60730446-3	chr10	60729959	60730959	+	723.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 3 of 5)	intron (NM_023596, intron 3 of 5)	22323.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	3.39274842225367	3.61963789115043	3.34468065469856	3.57116257811689	3.26903291228666	3.52957123325373	-0.0172736330540825	0.977335889239988	0.994771164142869
Merged-chr8-11466283-3	chr8	11465785	11466785	+	947.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-11644.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	6.88457922435126	7.36848787356821	6.97849362383015	7.04604914000666	7.04825662693662	7.00912728958827	-0.100336008995815	0.705351471270693	0.922756484933722
Merged-chr4-154943907-1	chr4	154943407	154944407	+	546.0	f0_c57.idr	Intergenic	Intergenic	-15830.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.83989747202294	7.96881696399875	7.66759129376963	7.26507800639015	7.40717886335175	7.02060670771288	-0.852442667004306	0.000557163661313589	0.0114385575945179
Merged-chr3-90383839-4	chr3	90383338	90384338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6100.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	3.66741886342152	3.4784083560506	3.29424215283119	3.56585883817746	3.42751950758946	3.84096772238679	0.436694690680552	0.475874052282193	0.82219557869602
Merged-chr3-27283051-2	chr3	27282551	27283551	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34026.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.57569010408166	4.59986566040096	4.33864849026982	4.13723695375532	4.28728963198333	4.06519855058026	-0.898644219125741	0.0533464051936334	0.296062738387025
Merged-chr13-33951513-3	chr13	33951021	33952021	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-13138.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	3.60266690906695	3.75983856351549	3.99698109278602	3.72594167506758	3.44169940137535	3.78362407513913	-0.461363451324247	0.418099092090894	0.788473936634102
Merged-chr9-58802496-4	chr9	58801974	58802974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21038.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	4.91873868753949	4.71570157700596	4.97847948286304	4.99690627058518	5.00408590465523	5.26741180492897	0.47140361182506	0.22004189163591	0.614466077767587
Merged-chr4-149729005-4	chr4	149728515	149729515	+	905.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284270, intron 4 of 10)	intron (NM_001284270, intron 4 of 10)	8755.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	3.64233018354742	3.69767696491406	3.93202841809688	3.67115215973141	3.61259002654194	3.60071436977284	-0.429360398161037	0.433992740842764	0.79814689082248
Merged-chr17-30612021-2	chr17	30611521	30612521	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113560, intron 1 of 6)	intron (NM_001113560, intron 1 of 6)	638.0	NM_025374	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	6.01383981022532	6.1324578682539	5.9667163121003	5.91651339865929	5.72445234619357	5.98143474887368	-0.305692868505352	0.307932507067075	0.703947279446131
Merged-chr1-171233130-4	chr1	171232623	171233623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	MIR|SINE|MIR	1226.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	7.48182467756938	7.51593173986225	7.59038948489428	7.86158780799235	8.21738803959142	7.40670892967156	0.509861864005535	0.0659000517877315	0.335048974040912
Merged-chr17-5495722-5	chr17	5495258	5496258	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	3158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.92501850954207	6.13476307079389	5.63301202979836	5.74702328750026	5.77443827792738	5.51600589303715	-0.417583399388211	0.208224612364858	0.599078646853674
Merged-chr7-102313366-3	chr7	102312876	102313876	+	629.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	45552.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	3.51159157211912	3.39822498624877	3.13765188132338	3.55292147615299	3.47486666579096	3.51081564884951	0.546336187567654	0.377051988199861	0.759599589234051
Merged-chr11-80209592-4	chr11	80209090	80210090	+	980.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	535.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	6.94684699693283	7.00185985171551	7.15049388249234	6.87125312303919	6.66487018938406	7.03596037966802	-0.268764129565437	0.297790942865131	0.694583976395184
Merged-chr13-74808708-4	chr13	74808218	74809218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	42.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	6.25881727950214	6.35624533221657	6.17029678002595	6.38288317406621	6.22916748573308	6.16580346561492	-0.00761939286279873	0.978254918477233	0.995081175739339
Merged-chr15-25285628-4	chr15	25285117	25286117	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128147.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.2253113713848	4.04086354418774	4.00521399067331	4.16562141213673	4.07709858133577	4.21672732708944	0.145873873453613	0.760754077336244	0.941002855722266
Merged-chr9-66880791-1	chr9	66880291	66881291	+	574.0	f0_balb.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	38914.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.77374025873386	6.8998012956064	6.75159913422169	6.4619904846537	6.44622736488467	6.53049862337905	-0.533717018930729	0.0365504464731577	0.235284662706058
Merged-chr9-87021953-4	chr9	87021461	87022461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	-68.0	NM_024195	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	6.71250800428805	6.56835293392915	6.64006925796163	7.20967811308502	7.32286363216889	6.8902323587433	0.803060532512433	0.00214043748604606	0.0325062095891442
Merged-chr11-5742290-2	chr11	5741790	5742790	+	782.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	B2_Mm2|SINE|B2	-1114.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	4.60066841183527	4.61255491820184	4.62293101536297	4.40269824298387	4.0013617757235	4.16259508164487	-1.08703987870062	0.0181568474567937	0.151777673936276
Merged-chr9-20892165-4	chr9	20891681	20892681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145610)	TTS (NM_145610)	4006.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	6.49774432237267	6.40309145032805	6.39563017026442	7.3074014961316	7.40965276711556	7.10488394953034	1.31531364728012	2.09946996505116e-07	1.36799292758009e-05
Merged-chr16-91933760-2	chr16	91933260	91934260	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2130.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.06607264467809	5.016068288252	5.11746834285942	4.71637254987042	5.04258785389227	4.97695084492569	-0.303008402669719	0.427468430990584	0.794365779350231
Merged-chr9-21917735-2	chr9	21917235	21918235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031874, intron 1 of 4)	intron (NM_031874, intron 1 of 4)	448.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	4.48570852612734	4.04063538819014	3.9572860009764	3.95601303058701	3.86450279520911	4.0278566894136	-0.708249075960401	0.173254829693853	0.551957215225209
Merged-chr7-88248357-2	chr7	88247857	88248857	+	981.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29728.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.49841386608112	4.609090857386	4.53315343660895	4.90731942237413	5.08063318931941	5.02411003123835	1.04953999200872	0.00806028336497645	0.0865170353757689
Merged-chr11-54437078-2	chr11	54436578	54437578	+	801.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1101.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	6.62851641997908	6.63928514761049	6.40449808622582	6.31405867698027	6.62476029942655	6.28399604683969	-0.22489685973016	0.426339487667897	0.793775990271191
Merged-chr4-22357612-4	chr4	22357111	22358111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104378)	promoter-TSS (NR_104378)	68.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	7.32641633077143	7.43260486682022	7.36441883473742	7.16882392790575	7.34771311912261	7.17880557703735	-0.202213870790329	0.384118107474325	0.765293063085998
Merged-chr17-35736620-3	chr17	35736090	35737090	+	989.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-31991.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	3.11654212947837	3.12381272825406	3.3602979610534	4.46821632021799	4.27548179714446	4.19722816497073	4.89976569173007	5.62461968296302e-09	5.42309796732314e-07
Merged-chr1-177282179-4	chr1	177281688	177282688	+	880.845825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33421.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	2.75399772858406	2.86287373324644	2.73189993546799	2.83139332821611	2.94378912532082	2.98767606322736	0.674695097995622	0.342461649425914	0.731311405759821
Merged-chr7-145271203-1	chr7	145270703	145271703	+	970.75	f1_c57bl6.idr	intron (NR_132643, intron 7 of 22)	intron (NR_132643, intron 7 of 22)	12808.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.68155928555734	2.66017449820146	2.72983526410376	2.44809670248543	2.34753296780272	2.48952117502898	-1.66427210008781	0.0418817692737636	1
Merged-chr5-43865969-4	chr5	43865450	43866450	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2859.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.09804797795429	7.41459196396874	7.57755450145423	6.94189978256983	7.0451566690485	7.45691854655194	-0.318339568203617	0.254925261192785	0.652024436103169
Merged-chr10-43479164-4	chr10	43478693	43479693	+	996.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	53.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	6.89170246903033	6.80941393924531	6.50790456748093	7.15160105458444	6.5779711531467	6.75698641377672	0.151054251474215	0.60955512516559	0.885271548963721
Merged-chr13-5805627-2	chr13	5805127	5806127	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52465.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.97149418569976	5.94796998196092	5.80175001874381	5.59516690747027	5.53123941030034	6.00345508272433	-0.362311948789179	0.267009090057951	0.664516381431973
Merged-chr6-83796212-2	chr6	83795713	83796713	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164187, intron 1 of 9)	B1_Mus1|SINE|Alu	1055.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	5.32674848365028	5.25191392103612	5.12273410602298	5.13014902567438	5.27747332292378	5.28640564123876	-0.0195563497720333	0.955627728339924	0.989763164889919
Merged-chr8-83595480-1	chr8	83594980	83595980	+	717.0	f1_balb.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-989.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	4.93253274197844	4.8484903930302	5.04838950574741	4.8005347550594	5.40408326338248	5.21100048661159	0.485148970906759	0.226090955568364	0.621123092674736
Merged-chr15-82244527-4	chr15	82244027	82245027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080158)	promoter-TSS (NM_001080158)	-191.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	4.06375437092258	4.04165587409138	3.97019122580248	3.83993363852832	4.0270135013216	3.66478359914507	-0.495713520134577	0.346182508304861	0.734515828466387
Merged-chr8-71404056-1	chr8	71403556	71404556	+	589.0	f1_balb.idr	intron (NM_026636, intron 8 of 8)	intron (NM_026636, intron 8 of 8)	-1956.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	4.18527059545315	4.15383049590237	4.57890731819335	4.50809304053377	4.30142664957641	4.60623183731848	0.42094989054273	0.367914848395159	0.752923975674939
Merged-chr11-54492754-4	chr11	54492256	54493256	+	998.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 9 of 17)	intron (NM_173753, intron 9 of 17)	-30089.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	5.78661700520716	5.66466686323267	5.62945428141415	5.76688742168854	5.83192343816627	5.66419784111034	0.115748012700627	0.709557799896115	0.92401439884764
Merged-chr10-98831664-4	chr10	98831160	98832160	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82982.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.03087855784728	4.0041775954685	4.35471085528799	4.25806769675425	4.26870752337377	4.10916332355156	0.251574105293579	0.601895801605525	0.882164677850668
Merged-chr6-83101543-4	chr6	83101070	83102070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081266)	promoter-TSS (NM_001081266)	54.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	7.06489569002651	7.23992500720549	7.19082826212904	6.97547324839821	6.82287591255054	6.66974405968105	-0.507762976596191	0.0428154433122825	0.259418000955975
Merged-chr8-35588457-3	chr8	35587886	35588886	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081279, exon 1 of 3)	exon (NM_001081279, exon 1 of 3)	588.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.9969387288108	5.07492699839015	5.23188667910968	5.45089075551903	4.88974608238834	5.1667918524892	0.179087215232997	0.646471732905316	0.90100465546023
Merged-chr15-76670628-2	chr15	76670128	76671128	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-680.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	2.96402801295449	2.97813027225634	2.88524545366963	3.06847052936781	2.94463207418402	3.4107244093993	0.910478691615687	0.192117770404496	0.579130364084242
Merged-chr10-67196967-2	chr10	67196467	67197467	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	B3|SINE|B2	11217.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.15759812992798	4.05707303469328	4.46993602639391	4.50525482113071	4.32326258141019	4.5359825783177	0.593448052793606	0.20253299014642	0.59252027125208
Merged-chr8-69903270-4	chr8	69902697	69903697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023312)	promoter-TSS (NM_023312)	-639.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	7.90121855399941	8.13073310861542	8.00026585719793	7.97593951004818	8.15606226687061	8.01953897617049	0.057285109006615	0.792222769286083	0.949929758256028
Merged-chr6-72161905-4	chr6	72161373	72162373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-38676.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	7.18254163211749	6.78365398363773	7.08609119104935	7.09601020602039	6.96205738319809	6.87044105292231	-0.067569728526307	0.79617966104268	0.951409082548819
Merged-chr12-40565015-4	chr12	40564519	40565519	+	858.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118966.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.02223971547628	5.23453860513421	5.17009758793429	4.66877758942233	4.58085522087652	5.46029792069761	-0.396675982424579	0.383648255151844	0.76494131641868
Merged-chr17-50111245-4	chr17	50110742	50111742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79255.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.65282601275662	3.90562673867412	4.0203514077393	3.50718155101496	3.56024173485927	3.85820714340523	-0.730352382384174	0.195086245802015	0.582787221560878
Merged-chr14-79562730-8	chr14	79562222	79563222	+	920.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	intron (NM_001286412, intron 3 of 7)	-24938.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	6.12381362271697	6.46050399625789	6.54302155661425	6.42876565110464	6.74563894661153	6.30578222276236	0.219414798126941	0.467078191319153	0.817772585866051
Merged-chr2-58923291-4	chr2	58922786	58923786	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	RMER19C|LTR|ERVK	168102.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	6.37227906161397	6.65317659124776	5.89512323123324	6.26149932137953	6.44399480008112	6.08388242911661	-0.129161970404156	0.697731914281689	0.920106455411436
Merged-chr10-111473174-4	chr10	111472685	111473685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015781)	promoter-TSS (NM_015781)	-42.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	6.25621776215755	6.07776857104947	5.91736043976746	6.17370672493785	5.6475265013054	5.62750730488946	-0.437341039208322	0.195373577627296	0.583020169139918
Merged-chr14-12283764-2	chr14	12283264	12284264	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	-439.0	NM_001284384	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	3.33367837503177	3.53779200356057	3.28038205299384	3.39959919573283	3.21336671675131	3.46430357991134	-0.144053531245026	0.814854595511718	0.956370078970016
Merged-chr4-136887510-10	chr4	136887105	136888105	+	712.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1428.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	6.54882156957166	6.73802804269295	7.01836927607586	7.22623335408296	7.29300369907805	7.29095965046301	0.758977521830844	0.00329964514162723	0.0451871087795456
Merged-chr2-132599295-4	chr2	132598766	132599766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	1070.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	7.8949300555487	7.69609512385157	7.53416179013516	7.27190234430694	7.2046707416306	7.27854657015402	-0.692814649443632	0.00325146465868779	0.0447704569452414
Merged-chr2-59129212-4	chr2	59128708	59129708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1MA6|LINE|L1	31475.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	7.22294826692728	7.28948770882584	6.66889942422399	6.95500329267356	7.20339237657802	6.71085676170124	-0.17857425577867	0.550970270521409	0.860915014090791
Merged-chr11-96967059-4	chr11	96966578	96967578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	10610.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	8.04085546857475	8.20027377007951	7.93256066288393	8.05796860888646	8.57278582944218	7.96488419037942	0.240970104189393	0.35344152384109	0.740735826287885
Merged-chr12-82441803-1	chr12	82441303	82442303	+	543.0	f0_balb.idr	intron (NM_001167983, intron 21 of 23)	RLTR31D_MM|LTR|ERVK	130454.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	2.81185436970618	2.9753166586737	2.92109516256645	2.97766518309231	2.88688566809934	2.99371543053734	0.221741838376667	0.746669831353921	0.936300236930265
Merged-chr14-62222906-4	chr14	62222399	62223399	+	650.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	70080.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	3.5762651713268	3.43025337825884	3.92391297761735	3.36671008350977	3.33170615433897	3.71548794410114	-0.629318722194271	0.306041410872298	0.7020655990236
Merged-chr5-76175234-4	chr5	76174735	76175735	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-I_MM-int|LTR|ERVK	-8645.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	3.42040933427296	3.80423632974414	3.63402932045227	3.16969058590526	3.12889268351407	3.32496894556222	-1.69792530805164	0.0074643164509146	0.0818517189309044
Merged-chr6-124476688-2	chr6	124476188	124477188	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11904.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	2.81381490053378	3.14026013552561	3.04324379835918	3.09515195167403	3.13713263384282	3.23054482847345	0.648181019963426	0.34092485586076	0.730599337545402
Merged-chr15-76311880-2	chr15	76311380	76312380	+	660.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4635.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	5.12497826581306	5.63496904038128	5.58141388879471	5.12178535798335	4.62159930370837	5.51306902005808	-0.673057053309803	0.125929998735271	0.474650450025566
Merged-chr1-155052307-2	chr1	155051807	155052807	+	851.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30957.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.25044812391309	4.10635981868915	4.00428663915469	4.21294372651466	4.2823643761448	4.31126458023218	0.38068656146955	0.417147620278053	0.787800120346772
Merged-chr7-73537877-4	chr7	73537380	73538380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	CpG	3866.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	8.40721403421241	8.57709492835931	7.90612082326654	8.33082050302545	8.55078573228109	7.87641927312579	-0.0614131314322805	0.830876485782814	0.960370002015736
Merged-chr15-8995667-4	chr15	8995170	8996170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	27721.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	5.26323231716137	5.36098822734269	4.87668511117522	5.2666184619735	4.9153927448705	5.09438426008835	-0.205539877582284	0.59877904669745	0.880808927175713
Merged-chr8-104641062-2	chr8	104640562	104641562	+	685.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026753, exon 3 of 5)	exon (NM_026753, exon 3 of 5)	666.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	4.81694876873308	4.53444141906223	4.753998848531	4.72492747883755	4.73190475356279	4.44265226368685	-0.131136163613426	0.756644674697492	0.939652679558287
Merged-chr7-55854788-2	chr7	55854288	55855288	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	12717.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.0862059553606	4.81271368288034	5.27715965120964	5.33168474633134	5.22919559686204	5.56375980710159	0.636089404695776	0.0923534672912476	0.404825701689146
Merged-chr8-92849866-4	chr8	92849369	92850369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-5464.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	4.09999523922754	3.94681731277524	4.27691281150289	4.44817414928399	4.94389901305053	4.56270766383503	1.49240313399942	0.00166086587705819	0.0267668657560057
Merged-chr3-65549914-4	chr3	65549408	65550408	+	896.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-20494.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	4.77002270818297	5.2378073403424	5.13206258259959	5.22662285861252	5.17646994920483	5.22866652633985	0.305725871486982	0.421322580904073	0.790226764066497
Merged-chr11-8594778-4	chr11	8594285	8595285	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	URR1A|DNA|hAT-Charlie	69750.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.2180796742025	4.07695857708251	3.85949391822896	3.9479631148651	4.01216388994221	3.8222830612437	-0.390746295356527	0.4462157014648	0.805727221359847
Merged-chr19-4928335-4	chr19	4927838	4928838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-51.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	5.44094334009072	5.49947100700159	5.7688034189222	5.69028182743405	5.73831903339483	5.415143413323	0.12203614040668	0.717048462162174	0.926979087819795
Merged-chr15-58261784-4	chr15	58261267	58262267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4A|LINE|L1	-46875.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.61148137469799	7.46445462202619	7.4465294186941	7.14617386840599	7.17988320727377	6.98531161583919	-0.592211607620381	0.011680742269807	0.112167478682759
Merged-chr7-3962194-4	chr7	3961688	3962688	+	895.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46687.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	2.78453497965864	2.71007906577422	2.99987563130966	2.90686045751246	2.95106688253016	3.34132961293502	1.15165726121278	0.113702586385511	0.450458333979919
Merged-chr17-34635867-4	chr17	34635357	34636357	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6171.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	5.4108789332839	5.28458025916333	5.1367492522549	5.81351557541879	5.89461863083292	5.61991516780252	0.938339147264233	0.0051928873419147	0.0627745369396644
Merged-chr4-134921873-2	chr4	134921373	134922373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1752.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	5.45661248437359	5.21803147051919	5.69878635521358	5.66015878796241	5.98255991236456	5.57178156456345	0.559893598697217	0.112268471287865	0.447610683225713
Merged-chr9-45408531-4	chr9	45408027	45409027	+	830.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_052823, intron 3 of 5)	intron (NM_052823, intron 3 of 5)	2450.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	2.89946361457303	3.14072758527844	3.05840301430967	2.8679366044849	2.93119964297108	2.82612945991864	-0.752845825397098	0.28231789811394	0.680265519758811
Merged-chr2-76675704-2	chr2	76675204	76676204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031256, intron 1 of 7)	CpG	389.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	5.81599248478408	5.61103536229523	5.8203590983928	5.77993651534307	5.2648699255756	5.59736461306983	-0.355025739961577	0.303492885415863	0.700048369821532
Merged-chr10-77266425-4	chr10	77265924	77266924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030262, intron 6 of 8)	intron (NM_030262, intron 6 of 8)	7124.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	6.91136649318331	6.71992082598111	6.82958750296953	6.73782557216239	6.89945834019802	6.75103416523384	-0.0292455207135782	0.907865100831715	0.979069714243211
Merged-chr10-37229287-2	chr10	37228787	37229787	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90361.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.69974425947243	4.5697341354973	4.41984957800798	4.61957717583685	4.84090033764245	4.85482026618217	0.470231972350853	0.260180665738066	0.657649400461384
Merged-chr11-121754062-2	chr11	121753562	121754562	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51635.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	3.68761407580824	3.87459737451959	3.63262460497099	3.5876771185094	3.60624993960979	3.70323921447202	-0.377035881281946	0.491586598319674	0.830577684235539
Merged-chr13-100588915-2	chr13	100588415	100589415	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	28029.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	2.89187683182677	3.02428739632808	3.02192305117731	4.07696971732124	4.03106099363157	3.37658180470447	3.98829133513093	1.2880529534688e-06	6.78102727369754e-05
Merged-chr6-6542339-4	chr6	6541834	6542834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	36324.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	2.86720653520761	3.01577983808359	3.35228672685535	3.03433961616101	2.9531711969266	3.098277114546	-0.267251644207986	0.700340240970795	0.920919335036368
Merged-chr6-17837920-4	chr6	17837438	17838438	+	897.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	88768.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.45519239643742	3.61059064926785	3.10499037251039	3.33371756616842	3.40460901594877	3.42312366130562	-0.104941813999903	0.870603118265565	0.970084781962666
Merged-chr10-14102063-4	chr10	14101549	14102549	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	135670.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.914585377349	3.79466688590557	4.12780035039452	4.10297018646824	4.20926114351904	4.00709457114813	0.50622131645338	0.311805069243582	0.706723622367304
Merged-chr6-33884327-4	chr6	33883813	33884813	+	906.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-145135.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.22454066469825	3.80688334010847	4.14692131522925	3.95246373604704	3.83842164908455	4.34127886800706	-0.050974617838777	0.923967538984847	0.982833948467092
Merged-chr3-127492811-3	chr3	127492281	127493281	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	MLT1G1|LTR|ERVL-MaLR	6334.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.40003714996731	3.53092460952912	3.51969167077537	4.51900647576647	4.54049299430237	4.24521650065055	3.16805043573292	5.02650535177288e-08	3.91249258475508e-06
Merged-chr16-33755520-4	chr16	33755018	33756018	+	937.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-38519.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	7.48211929280301	7.87582593770082	7.31705248093785	7.59587619191622	7.93090917950707	7.30247413033775	0.0833611477826181	0.772261124104505	0.943716660313239
Merged-chr17-81670261-6	chr17	81669704	81670704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	CpG	68183.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.18460270782372	6.05338475431228	6.20088169533993	5.89037785229659	5.69227115735557	5.78273932882028	-0.624945256324114	0.0352021211473943	0.230220710243841
Merged-chr8-106058756-4	chr8	106058221	106059221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-882.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	7.24768101542714	7.44753277815492	7.31092716655832	7.05162351424713	7.29651502878907	7.09046928704482	-0.272388070960132	0.260368706450228	0.6577835598224
Merged-chr1-167393822-4	chr1	167393304	167394304	+	969.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-7.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	5.58056859786054	5.41803558389171	5.19436028010643	5.26234521365608	5.60437457557246	5.11576399107726	-0.108354541187976	0.772228200459264	0.943713489951452
Merged-chr7-35737030-1	chr7	35736530	35737530	+	654.5	f0_balb.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	17424.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	3.08558394238911	3.20228803156396	3.1517766520204	2.74943801076352	2.74372627407882	3.05226311748527	-1.46631296274051	0.0419310567515008	0.25624260944322
Merged-chr10-79669864-4	chr10	79669362	79670362	+	849.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148934, intron 1 of 1)	CpG	452.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	5.47396411126321	5.32001577307211	5.52827513349555	5.8054682490952	5.7734263884244	5.92127708934208	0.728589832869255	0.0221289568222554	0.172693949481781
Merged-chr4-19574099-2	chr4	19573599	19574599	+	848.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	-967.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	4.13167056116614	3.98986175851963	3.87791916301664	3.8082510385643	3.8561626221099	3.99733533260773	-0.379814441680811	0.454716534046337	0.810532225390276
Merged-chr1-127242999-4	chr1	127242513	127243513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	38027.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	7.11728302534794	7.47556754041542	6.90862786442177	7.20592296683695	7.31175181307686	6.99501308390367	-0.0232893417632702	0.9326279275591	0.985254864630157
Merged-chr14-63088806-2	chr14	63088306	63089306	+	841.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33656.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	3.48290710115837	3.29426646497235	3.84296105303146	3.66542240786853	3.58122913146868	4.24922280739445	1.00315672473451	0.112303505605584	0.44763602190707
Merged-chr14-75163331-2	chr14	75162831	75163831	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	Lx8|LINE|L1	26906.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.39818820305914	6.57341685264718	6.36781615824907	6.30518008441329	6.31580858639717	6.40863254704909	-0.186806018282248	0.489876876610511	0.829956939079416
Merged-chr13-20111463-4	chr13	20110948	20111948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	20941.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.21527408427598	5.01648251022002	4.69185421242434	4.87468830727831	4.89758555765182	4.62851702092667	-0.415422641517838	0.316061940161653	0.71019071166749
Merged-chr11-74830011-4	chr11	74829514	74830514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-910.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.48757460091201	8.22436285955969	7.84853033342916	8.12111810786235	8.41758603623988	8.09354748826646	0.00419301884082976	0.98710885816096	0.997161899445921
Merged-chr9-20642622-4	chr9	20642085	20643085	+	967.0238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153857)	promoter-TSS (NR_153857)	-132.0	NM_001361025	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	4.49909411393749	4.56939987290739	4.79497011183779	4.94933243175495	4.8416044134451	4.74611772244381	0.544073605017012	0.179708784587641	0.561264490202252
Merged-chr5-93268163-4	chr5	93267651	93268651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 1 of 7)	CpG	578.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	8.00937907861048	8.3256578263621	7.99460198899919	7.88361502441753	8.02677274446193	7.69387069619504	-0.345317523371651	0.146506061688957	0.510574484043171
Merged-chr14-70058548-1	chr14	70058048	70059048	+	543.0	f1_balb.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-18897.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.78565536021318	4.56104372682751	4.41961658201465	5.02346681225184	5.04664999033415	5.11801068885417	1.01699534182956	0.0122854539419834	0.116124963263041
Merged-chr5-74535621-4	chr5	74535130	74536130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159574, exon 1 of 16)	5' UTR (NM_001159574, exon 1 of 16)	148.0	NM_001159574	66899.0	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	7.78327231941509	8.30984727407057	7.94010646483967	8.01270843684754	8.06120867881991	7.91792545926803	-0.0487572790316342	0.842088257821529	0.963002495523594
Merged-chr2-36224781-4	chr2	36224298	36225298	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-5628.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	4.45347366764759	4.47139540188021	4.35957804271639	4.53225971447358	4.39118926602411	4.38255949744922	0.0111935692505869	0.97939100061702	0.995226984262383
Merged-chr11-4203904-2	chr11	4203404	4204404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	-14347.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	3.97415438557892	3.80382889494439	4.31877307932489	3.84662832360311	4.13580115828949	3.93891454875315	-0.161404639822181	0.761543180165352	0.941258867861232
Merged-chr10-80930572-4	chr10	80930078	80931078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008655, intron 2 of 3)	CpG-1325	487.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	7.04393988636486	6.89109623491787	6.93510664130783	7.26277506890009	7.26152857303347	7.14005318854805	0.403354488784527	0.0898188376400493	0.398318277586379
Merged-chr13-55640664-4	chr13	55640168	55641168	+	866.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282055, intron 3 of 22)	B3A|SINE|B2	5669.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	2.55523261759934	2.66772196968227	2.81073858062666	2.78521597925689	3.0084629780609	2.94347621944234	1.25953433215554	0.0914879850581931	0.402651658770873
Merged-chr13-107756482-4	chr13	107755997	107756997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	69100.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	6.46996818715162	6.32716640698843	6.03231512302152	6.04995015386796	6.10150594216678	6.22551006545692	-0.2964667843963	0.315466986582281	0.709830183143918
Merged-chr7-19604479-4	chr7	19603979	19604979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_125835)	promoter-TSS (NR_125835)	7.0	NR_125832	53609.0	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	5.94529786585407	6.00740563199525	6.25079902503441	6.26370372090454	6.01978338775088	5.99103040865003	0.0576051720197364	0.847851619503128	0.964318271116593
Merged-chr3-87369352-4	chr3	87368857	87369857	+	872.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 5 of 5)	intron (NM_009690, intron 5 of 5)	-7030.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	4.41917750461243	4.47017132303459	4.98228525258184	4.80650340223133	5.04014598030549	5.14140594015682	0.830364238666833	0.0553628645250757	0.302530585893643
Merged-chr6-103649158-4	chr6	103648640	103649640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007697, intron 4 of 26)	SYNREP_MM|Satellite|Satellite	138264.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	11.0957960778507	12.2992333480725	9.92071807690417	11.5987300603716	11.8071567438338	10.5251382431983	-0.0646326127352523	0.945163769368174	0.987875414328125
Merged-chr7-102233045-4	chr7	102232527	102233527	+	864.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	B2_Mm2|SINE|B2	9999.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	4.11819033218829	3.85678040111931	4.272691820952	4.17977182613219	3.7945152433691	4.07312718590252	-0.192580749016957	0.711509481545615	0.924661173262022
Merged-chr9-114775577-2	chr9	114775077	114776077	+	823.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	6416.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	2.38683170689397	2.59344906532338	2.6306202005168	2.6113855315604	2.56754249493756	2.70387066648122	0.498646752634897	0.523709292363034	1
Merged-chr6-83005011-4	chr6	83004479	83005479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 5 of 9)	intron (NM_033079, intron 5 of 9)	28492.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.40613575576091	7.22590358757818	7.15424722609083	7.43062421783303	7.65576759158232	7.07962416021535	0.224271784488381	0.398576334142387	0.775273667788888
Merged-chr6-16738116-3	chr6	16737604	16738604	+	969.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160337.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	3.12138864409229	3.23046122810964	3.1735994969333	2.88323183024886	3.22319173196913	3.35482252532017	-0.0393795338282251	0.95369952285271	0.989446911725587
Merged-chr18-55238322-4	chr18	55237806	55238806	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-245715.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.15506341455638	4.58230987844049	4.72994880698786	4.58814267615547	4.44914919268084	4.89862886703219	0.350441508942957	0.456536123291787	0.811680471504093
Merged-chr9-66908184-4	chr9	66907670	66908670	+	984.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11535.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.82956951798461	7.12201763492987	7.00392038891023	6.5708806455694	6.72670425586327	6.99656402876403	-0.342613241258231	0.202881802957197	0.592772302593993
Merged-chr10-95563003-2	chr10	95562503	95563503	+	715.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358996, intron 1 of 4)	intron (NM_001358996, intron 1 of 4)	1143.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	5.62891116084483	5.75836592165421	5.75923251833282	5.62460655242609	5.53282810452036	5.71907084964127	-0.174736020267933	0.578922045871104	0.872437129840066
Merged-chr11-117882010-4	chr11	117881538	117882538	+	899.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	7.150455675372	7.00917661623946	6.86679073627391	6.53143199824308	6.71671234193153	6.71041396071216	-0.564091005054632	0.0279096388269516	0.199510758377405
Merged-chr9-40802832-2	chr9	40802350	40803350	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_031165, exon 4 of 9)	exon (NM_031165, exon 4 of 9)	1577.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.18417112205856	5.50494568498093	4.94010685832492	5.71751397363133	5.5429827199453	5.43226776116022	0.630994143440128	0.0917925922611262	0.403522718557893
Merged-chr10-67050117-2	chr10	67049617	67050617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	45042.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	3.62545324337554	3.24705550730277	3.42731182891709	3.50754068070725	3.06941871727083	3.60475843541109	-0.122833631626432	0.852165491549596	0.96531854415899
Merged-chr8-61911096-4	chr8	61910588	61911588	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8394.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.50278857302123	6.2802925055473	6.51728164195478	6.50802022607406	6.73167195039226	6.43179388121699	0.226102264458885	0.413957079252942	0.785490363902032
Merged-chr11-30771702-4	chr11	30771181	30772181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134013)	promoter-TSS (NM_134013)	-94.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	8.20777007296913	8.55547266016444	8.1167111865104	7.96489259551635	7.70977632844293	7.87246350390279	-0.652960548564083	0.00619823307414503	0.0714127080633426
Merged-chr15-100049837-4	chr15	100049337	100050337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	11173.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.0110183388322	5.73272914888966	5.83637422623945	6.23687528826588	6.22497528949256	6.21672599859503	0.618370477476195	0.0349471378987409	0.229346277330896
Merged-chr8-84423138-3	chr8	84422628	84423628	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	7764.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	4.99455970524485	4.82671304932789	5.13668919923721	3.57830995761269	3.3363077892134	3.89250418707611	-4.97841187511634	2.37337477282255e-11	3.59061396540034e-09
Merged-chr12-100764911-3	chr12	100764407	100765407	+	668.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14150.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	4.1470563282968	4.24408402719775	4.26880896240646	4.09846757940606	3.9929757031211	4.24835920849638	-0.311502655412749	0.509965387615095	0.840623252721494
Merged-chr14-79494419-4	chr14	79493923	79494923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-13155.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	4.24571816825225	4.02446967809279	3.98961092750898	4.00842683142353	3.84976566239155	4.05890239657512	-0.376650314287283	0.450059559670829	0.808117861931044
Merged-chr10-9882030-4	chr10	9881522	9882522	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	MTB_Mm|LTR|ERVL-MaLR	19018.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	3.41333095680941	3.47552838469372	3.71586006939859	3.21252163780137	3.35066838687881	3.25558159581169	-0.991471748954682	0.107869474016755	0.438671801643296
Merged-chr11-32534841-4	chr11	32534240	32535240	+	854.1750490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	1474.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.35755873560177	6.68407826976591	6.78353920962838	6.7885812711305	6.87933634220424	6.63731164388137	0.257693855021013	0.349373684831405	0.737460313735453
Merged-chr1-93636822-2	chr1	93636322	93637322	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1095.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.55294981413696	3.54722457563853	3.78854666833611	3.73779254830231	3.72621414809426	3.75801745387978	0.386416965309686	0.477335679551962	0.823237639056184
Merged-chr3-151749973-3	chr3	151749475	151750475	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133871)	promoter-TSS (NM_133871)	-16.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	5.20408934733131	5.51632426383909	5.28031977981875	4.83608335196705	4.70797879224532	4.50086156503541	-1.39381098257912	0.00047162511022746	0.0100424375766369
Merged-chr14-60765327-3	chr14	60764846	60765846	+	742.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310594)	TTS (NM_001310594)	-2788.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	3.30378106977665	3.06618908729803	3.51189600351402	3.13838269085111	2.94799557191865	3.5318193602911	-0.31488000879183	0.651444021879563	0.902821427486479
Merged-chr4-106316167-4	chr4	106315667	106316667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183225)	promoter-TSS (NM_183225)	-46.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	7.2198174404976	7.26123854170793	7.23078681731339	7.14597190141614	6.44868939636118	6.76318640659117	-0.640696678212928	0.0260317197490937	0.191431451520084
Merged-chr5-62844662-1	chr5	62844162	62845162	+	821.666687	f0_balb.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	30839.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	5.8133342675903	5.5859286135357	5.69251415865004	5.33084562503213	5.98301964547752	5.72835797361593	0.0322569539960026	0.92756398127199	0.983591477911632
Merged-chr5-104979342-4	chr5	104978833	104979833	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	3384.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	5.72392809419089	5.69726728841898	5.71249992966123	5.63382651527974	5.66668268511345	5.94307621781749	0.0622889842299562	0.84336519557118	0.963409871508
Merged-chr1-63112440-2	chr1	63111940	63112940	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1827.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	3.49232853389246	3.61160155489136	3.30461192003849	3.55092900950699	3.46675037865427	3.43603711107128	0.0114617561747965	0.984556724605867	0.996666495626421
Merged-chr19-46506502-4	chr19	46506007	46507007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4859.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.00958388233954	6.72913171659876	7.00128881145195	7.02915991407877	6.96275343335643	6.89325843084785	0.0754834764158436	0.764863730154398	0.942093382415686
Merged-chr8-95000800-4	chr8	95000299	95001299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	16400.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	4.1907604069561	4.14713992449772	4.00863374364137	3.807944785308	4.0447035623761	4.58158771197861	0.16001413937818	0.766992376712896	0.942573703853445
Merged-chr11-70657684-2	chr11	70657184	70658184	+	694.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276285, intron 1 of 11)	intron (NM_001276285, intron 1 of 11)	508.0	NM_007933	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	3.17614179605508	2.83296866792121	3.21325261601424	3.04290345927692	2.92267011484778	2.87067471795102	-0.612867524764592	0.386641779258864	0.767131316757601
Merged-chr15-101146476-6	chr15	101146017	101147017	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17995.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	6.1238164535925	6.17714199517239	6.43877296767589	6.19134366036028	6.61181645567069	6.29183821033191	0.235619704155702	0.431549814886556	0.796919527665518
Merged-chr3-137971177-2	chr3	137970677	137971677	+	637.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	10372.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	2.93301548770767	2.79853286056688	2.87655124645812	2.59443105434522	2.63523397660119	2.57098990573606	-1.48096906733265	0.0540082824901168	1
Merged-chr19-44294901-4	chr19	44294436	44295436	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009128, exon 2 of 6)	exon (NM_009128, exon 2 of 6)	1260.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	5.59480041880641	5.39113632327389	5.51981648554702	5.84275957085629	6.15983282955361	5.21609782013418	0.565520200649315	0.145273955824432	0.508338649447163
Merged-chr17-64668653-4	chr17	64668135	64669135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	66986.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.19466309734619	5.42185629300899	5.07636762938682	5.58672758098071	5.35758171658961	5.02920709036953	0.209613537037694	0.581398955334404	0.873298754324848
Merged-chr9-47628302-1	chr9	47627802	47628802	+	582.333313	f0_c57.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	97950.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.79587611903582	6.89141425025509	6.83666182438205	6.90109234426075	7.29117913253852	6.70491742811101	0.247831510064604	0.373068459092972	0.756999545058357
Merged-chr14-48120743-2	chr14	48120281	48121281	+	815.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_033602)	promoter-TSS (NM_033602)	-88.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	4.2891443647599	4.12573588295338	4.26175077896262	3.70160908663956	3.28318226796621	3.46052552773675	-2.53500303676847	2.51361774596934e-05	0.00088774662736255
Merged-chr14-17850963-6	chr14	17850408	17851408	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	MER2|DNA|TcMar-Tigger	-130736.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.07514664618369	5.03063463256279	4.97230029690345	5.39338313611275	5.33889894108278	5.14636917840405	0.562299288498101	0.115855327257308	0.454421140304804
Merged-chr13-20789407-1	chr13	20788907	20789907	+	783.5	f1_c57bl6.idr	Intergenic	Intergenic	-4706.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	3.72508915425687	3.76397298471812	3.84628942146323	4.04950978126455	3.95622007857164	4.06108602107429	0.761500242278868	0.132090426566112	0.486174875309909
Merged-chr6-29530363-4	chr6	29529937	29530937	+	954.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	1155.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	5.78866278927968	5.74933303393068	5.95200704357792	5.74857645389684	5.91229742663525	5.82292355572173	0.0141350256316135	0.963059410672413	0.991036835024303
Merged-chr11-98201105-2	chr11	98200605	98201605	+	693.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2200.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	2.96646940515748	3.02490887270198	3.0626163274315	2.96092296953952	2.91166450175695	2.83156838877297	-0.536780313934799	0.432814848573053	0.797521047015227
Merged-chr2-120572322-4	chr2	120571816	120572816	+	996.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	4645.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	6.65217333658799	6.46764580278474	6.79411119566673	6.67430268573362	6.86840534247162	6.83792662346008	0.252152286823013	0.339116164306492	0.729057813336113
Merged-chr17-33949865-1	chr17	33949365	33950365	+	582.0	f1_balb.idr	TTS (NM_019420)	TTS (NM_019420)	1623.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	3.02798906844565	2.85374957082358	3.23966300334578	2.97969541417269	2.99480026445138	3.14611462312234	-0.0193863873178861	0.977397509300272	0.994780585095005
Merged-chr15-103305821-2	chr15	103305321	103306321	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4617.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	7.4982773601697	7.49515337350489	7.50909676925732	7.69659680677005	7.7568100378412	7.69773241084716	0.317781137085022	0.141183702137486	0.501979601184758
Merged-chr1-138940602-4	chr1	138940102	138941102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-23107.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	4.97763957538545	4.81475413663615	4.51770997606289	5.03992988165377	4.945287983673	4.63288076759969	0.216734182600494	0.609416569667409	0.88517286252283
Merged-chr16-57189700-4	chr16	57189213	57190213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 10 of 17)	intron (NM_026254, intron 10 of 17)	11758.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.52223920081792	6.67073788232787	6.46772154834849	6.07550337153422	6.23312004057956	6.28022548125018	-0.596166832862832	0.029782367163152	0.207879473778337
Merged-chr2-84811068-4	chr2	84810571	84811571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024230)	TTS (NM_024230)	11581.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	4.81499064575463	5.16829303241277	4.91564586161097	4.52620153628989	4.83546075873708	4.62814768881569	-0.676642203021031	0.103673112240615	0.429329393947366
Merged-chr2-132590262-2	chr2	132589762	132590762	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7934.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	2.6156421563536	2.54486310667805	2.97439896973499	2.77117369698214	2.77158083790804	2.98997739190131	0.648417203226573	0.39799938721409	0.774770052576157
Merged-chr11-22843966-2	chr11	22843466	22844466	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	15769.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	5.55069210443432	5.71179030229544	5.79952450608495	5.80604142649635	5.90258715388173	4.85746949315861	-0.186549855082775	0.793663510000298	0.950531747588938
Merged-chr1-154032834-4	chr1	154032323	154033323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	132894.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.468523002228	6.05805119682948	6.49177783299601	6.18849420054414	6.12692551044781	6.06033472977836	-0.367914862536908	0.219176072387668	0.613227215079062
Merged-chr4-155705022-4	chr4	155704472	155705472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026899, exon 1 of 5)	5' UTR (NM_026899, exon 1 of 5)	157.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	9.68748038619995	9.87123565802565	9.14028802021072	9.3771403880047	9.6471182986893	9.1108401972629	-0.278307941456273	0.301265494802368	0.697953538576553
Merged-chr6-114397878-4	chr6	114397377	114398377	+	948.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317126)	promoter-TSS (NM_001317126)	-59.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	3.52896079694836	3.4817361424848	3.62872149978679	3.26015890425376	3.11451738503198	3.07710239881685	-1.59844302093428	0.0122909522407859	0.116163738533771
Merged-chr4-63397982-2	chr4	63397482	63398482	+	854.375	f1_balb.idr|f1_c57bl6.idr	exon (NM_001305432, exon 1 of 21)	exon (NM_001305432, exon 1 of 21)	258.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.65462570738986	3.56380003723937	4.1378453994217	3.98196873533648	3.65706787043642	3.78933694872573	0.0447065844480995	0.93816627288039	0.986279451858875
Merged-chr14-72600523-4	chr14	72599989	72600989	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	109514.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	6.66107346700142	6.75533322289155	6.63426738843596	6.6593453362384	7.02701130495393	6.47840908922241	0.110608677041472	0.69631550548416	0.919440123947475
Merged-chr1-93125053-2	chr1	93124553	93125553	+	642.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	4.35983171083145	4.09009406927639	4.09156874160105	3.98071167919741	3.85545217056863	3.85678513802808	-0.862559843030929	0.0849194692627294	0.385866054959217
Merged-chr11-105467403-3	chr11	105466905	105467905	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10670.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	6.23101758306171	5.91894734878412	5.8167384003959	6.10868484293891	5.74670736629937	5.85309784671939	-0.172539938877698	0.592898145855471	0.878314455943299
Merged-chr18-82917096-2	chr18	82916596	82917596	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	2464.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	3.88424632172332	3.95033623271291	3.60527937203176	3.88149703791653	3.6597626717365	3.78754687611025	-0.172710972058845	0.751220758525633	0.937763695322264
Merged-chr15-81831616-4	chr15	81831118	81832118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20204.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	3.70128998924381	3.15511515426088	3.61884944932187	3.50245407417284	3.2927917035608	3.47790146692187	-0.322398997876061	0.613043893266974	0.886978895339216
Merged-chr2-129626589-1	chr2	129626089	129627089	+	615.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	MTC|LTR|ERVL-MaLR	31127.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.93843607030515	3.93288403854714	4.05446374446546	3.97897648763657	3.7554196063923	4.2532744404777	0.0809142057153385	0.876362868360615	0.971300719954047
Merged-chr7-112405206-3	chr7	112404699	112405699	+	895.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027587, intron 7 of 9)	ORR1E|LTR|ERVL-MaLR	-22507.0	NM_020606	57342.0	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	3.03347198757374	2.92577115627109	2.98482699440132	2.85157765518429	2.86676571754971	2.93775662952902	-0.476699827157218	0.485989881242689	0.827641640456729
Merged-chr10-89732340-4	chr10	89731825	89732825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-30.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	5.60171146153563	5.66882201360104	5.67977301915191	5.54815426032969	5.90561257628905	5.57605859117856	0.0937500153030617	0.774820283169311	0.944509092162968
Merged-chr13-116000291-4	chr13	115999793	116000793	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	309395.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	4.40653254826287	4.1174922174252	4.09758669426283	4.09750620897848	4.00020407660445	3.96609052537538	-0.56101748340615	0.251848424609937	0.649428218365646
Merged-chr2-142699074-3	chr2	142698578	142699578	+	833.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202386.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	6.50599692108028	6.42281319830733	6.40447899902984	6.77297364800185	7.06511669056789	6.84949122543482	0.726402032425653	0.00554956611475229	0.0659292257676054
Merged-chr6-113285137-4	chr6	113284643	113285643	+	981.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170673, intron 6 of 19)	intron (NM_170673, intron 6 of 19)	2836.0	NM_170673	211232.0	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	3.81333976622627	3.91106837658352	4.07455559016592	3.95547158584448	3.89813998605249	4.05061290767484	0.104405347092852	0.835761090567094	0.961841448068673
Merged-chr9-114747993-6	chr9	114747432	114748432	+	859.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	16729.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	4.64701470860588	4.08979869329476	4.58530637815934	5.52896433988829	5.40699570152517	5.4560455630206	2.21879204285248	2.48039869508994e-07	1.58273784218592e-05
Merged-chr2-181582598-2	chr2	181582098	181583098	+	617.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026765)	promoter-TSS (NM_026765)	-625.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	4.15345592747108	4.09789878235248	4.28316287116769	4.21826801000798	4.49544601568439	4.26097245670484	0.446219000529698	0.337479594971366	0.727414835127997
Merged-chr13-102666428-2	chr13	102665928	102666928	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-27119.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.92988441191293	3.71718598843698	3.71282264341423	3.86183225949287	4.17296527479904	3.78466726299332	0.519570384138579	0.336207452578886	0.72624999258006
Merged-chr19-46502251-4	chr19	46501727	46502727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053100, exon 1 of 6)	5' UTR (NM_053100, exon 1 of 6)	579.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.03989835443344	8.03849300137212	8.29045848726778	8.18697970924692	7.93734062621847	8.0761273634019	-0.0776825823301899	0.727091419623799	0.930106435835116
Merged-chr4-149772655-4	chr4	149772242	149773242	+	883.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	1525.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.08786806955272	5.48211994548291	5.39400846972198	5.79766410800104	5.65923396666622	5.90347545187478	0.851766238477398	0.0130897135348341	0.121389369274906
Merged-chr3-67587629-4	chr3	67587130	67588130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	4862.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.64793898273129	3.62008694740103	3.31197184674176	3.40743807814212	3.49438969632821	3.44419632563637	-0.337830420142255	0.570934827402151	0.869288072801053
Merged-chr6-116006952-4	chr6	116006451	116007451	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11946.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.621048542851	4.54033182609569	4.5309473378902	4.36359753943533	3.99798148121539	4.55712462314088	-0.648349402888791	0.167201347195209	0.542841690952394
Merged-chr18-24206299-4	chr18	24205804	24206804	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361200, exon 1 of 13)	5' UTR (NM_001361200, exon 1 of 13)	310.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	6.68420006656885	6.62837996510802	6.78503955482317	6.74805181363551	6.67782010362561	6.8578009886709	0.0967516440928549	0.702753979134371	0.922000148631826
Merged-chr5-140732517-2	chr5	140732017	140733017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	8390.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.78119558991758	5.57909506399342	5.38880190257685	5.11018665646336	5.52491767869461	5.51231235961982	-0.385646808526105	0.282735709602585	0.680666404091425
Merged-chr19-53390692-4	chr19	53390188	53391188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356986)	promoter-TSS (NM_001356986)	-54.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	8.45144787108519	8.84289484490434	8.54915123700154	8.42281685610097	8.52169244181775	8.43618582725015	-0.23048407818684	0.294852791022152	0.691747281751485
Merged-chr9-46014509-4	chr9	46013998	46014998	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	1678.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.84427012905428	5.45875487577113	5.63692537886716	5.47807401432838	5.3370546035015	5.09934099833028	-0.640294321601687	0.0715524557502177	0.350858143464767
Merged-chr2-119156990-4	chr2	119156488	119157488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033136)	promoter-TSS (NM_001033136)	46.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	7.31954854435284	7.33036948583728	6.92283893363451	7.35024823527678	7.51727701148623	7.08138129442894	0.184127368544155	0.491694659987936	0.830651911890936
Merged-chr3-60542579-3	chr3	60542053	60543053	+	860.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	41374.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.11500390487867	4.20168523187188	4.14908427002642	4.07915344860887	4.32249461652536	4.26301838543751	0.199531940744311	0.670085830255402	0.909884567136783
Merged-chr15-86192245-2	chr15	86191745	86192745	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6104.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	7.29674589990728	7.14574754188543	7.07694972491919	6.80279179211896	7.22439099678265	6.89962408306733	-0.273757045675111	0.297490211824829	0.694173094123388
Merged-chr8-77112981-4	chr8	77112502	77113502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	210494.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	3.89815298233682	4.36748041434136	3.66270092607551	3.94738480442853	4.01061490182102	4.37360637042746	0.287648534132625	0.618510137162395	0.889443702136265
Merged-chr5-36794379-2	chr5	36793879	36794879	+	726.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026242)	TTS (NM_026242)	2375.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	2.77493679669747	2.53855109610605	2.82857295089036	2.59159788160862	2.52705099459184	2.78283421598409	-0.458738807415364	0.552815784719285	0.861940911171568
Merged-chr9-95575793-4	chr9	95575303	95576303	+	868.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15986.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.00487817873556	7.05662202562901	6.76099096827486	7.28775978570402	6.80219349349865	7.01129078560174	0.142045738023613	0.60274316765104	0.882397657327329
Merged-chr12-35462824-4	chr12	35462337	35463337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72152.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.60089764397099	4.75058515242684	4.54857503378181	3.90181103092512	3.80549458594368	4.0779874862883	-2.02474263619235	2.70408847067688e-05	0.00094379946924531
Merged-chr2-35733875-3	chr2	35733362	35734362	+	749.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37130.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	2.67857280913268	2.78454423057644	2.96609292792527	2.92055533144209	2.89595569514869	3.20472729531581	0.968053692732402	0.179517557300894	0.561087828684346
Merged-chr11-34050953-2	chr11	34050453	34051453	+	804.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010696, exon 2 of 21)	exon (NM_010696, exon 2 of 21)	4025.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.6550449207473	5.63707826081731	6.26966483498158	6.00982332562856	6.25764593226403	6.38306926296355	0.60067384913327	0.0797532232616266	0.373528436403998
Merged-chr10-37342531-3	chr10	37342034	37343034	+	809.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-203608.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.14940746684252	4.12985899784228	4.11130018116981	4.3481140609118	3.75265179951235	4.31465121718127	0.0818656371900178	0.875764659196365	0.971117457237427
Merged-chr6-119377782-4	chr6	119377274	119378274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	10960.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	4.4937805776564	4.71095042455133	5.25320081640961	4.91010579242997	4.789742531029	5.28725152932506	0.340965280450741	0.454361202577538	0.810220027947191
Merged-chr15-82125994-5	chr15	82125500	82126500	+	762.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028897, intron 30 of 30)	B2_Mm2|SINE|B2	-1922.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	5.24651809105	5.30716432970992	5.36014217102248	5.38630724738858	5.9778150722873	5.65404026626561	0.767164820375114	0.0313974214406143	0.214703866143214
Merged-chr17-29380725-6	chr17	29380186	29381186	+	962.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	19772.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.58926672836595	6.62985511949727	6.81154462540608	6.42845387889792	6.71788574148943	6.51937801102427	-0.169265899103572	0.529850965176556	0.851055038807203
Merged-chr17-35865916-4	chr17	35865380	35866380	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-248.0	NM_001146710	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	6.34935802200905	6.03307910565865	6.81951878583862	6.40264263846563	6.31967130752589	6.82342045501273	0.153030705569015	0.652985023235256	0.903046151766902
Merged-chr14-60273874-4	chr14	60273386	60274386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8681.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	6.41490406770393	6.39781640963694	6.56241518561374	6.2475596802922	6.49457712823281	6.77533292523153	0.0982131890589592	0.733172781429689	0.932039456283818
Merged-chr15-85811693-4	chr15	85811190	85812190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164625)	promoter-TSS (NM_001164625)	7.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	6.92921866084458	7.29241999520961	6.99561788887899	7.18047168834675	7.14905821767549	6.6282515994324	-0.0997438647056945	0.727044711037218	0.930092984118427
Merged-chr4-48045083-4	chr4	48044605	48045605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-200.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	8.26133949818491	8.44668865415628	8.06303093705821	8.08762162978893	8.14833559814016	7.84288415726037	-0.328412423596381	0.15823319125453	0.529936300177376
Merged-chr10-37258745-1	chr10	37258245	37259245	+	544.0	f1_balb.idr	Intergenic	Intergenic	-119819.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.23186066394104	5.00866471546	5.42631804598709	5.10030023782976	5.06399336383443	5.22271488724059	-0.201246265352779	0.58597752531734	0.875216158388641
Merged-chr5-114823401-4	chr5	114822891	114823891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	77.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	4.69140448088074	4.44872577238517	4.72742670581414	4.70952568173017	5.03004787992531	4.50054095351718	0.364434987288678	0.405190346004777	0.780049815379569
Merged-chr6-39810949-4	chr6	39810453	39811453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010930)	promoter-TSS (NM_001010930)	-17.0	NM_001010930	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	6.02900219715247	6.03493388092292	5.68934690669824	6.03729100072378	5.87615665116575	5.75226079658196	-0.0717885283528549	0.819326137977565	0.957264866871257
Merged-chr3-59153582-4	chr3	59153082	59154082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287119)	promoter-TSS (NM_001287119)	46.0	NR_045641	320463.0	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	5.66497361573218	5.6482595888596	5.89814107112898	5.80560606070262	5.86071735076079	5.98165897957307	0.266262585293194	0.388579183942164	0.768440363567345
Merged-chr2-177957300-4	chr2	177956817	177957817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282028)	promoter-TSS (NM_001282028)	-29.0	NM_001190302	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	5.07973330123224	5.27238130881526	5.32714654367647	5.39552729027735	5.06466902523105	5.06247711564053	-0.084628961812406	0.818536530715516	0.956987321171514
Merged-chr12-80852212-4	chr12	80851701	80852701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	61669.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.19970146295567	6.02574522259603	6.25373648745209	6.46886114540757	6.48410477042881	6.42877798277677	0.505200802907984	0.065193342282377	0.332868533229599
Merged-chr15-58144740-3	chr15	58144242	58145242	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	3376.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	5.70534958728309	5.80145660112054	5.5073317268215	4.50781156454959	4.33952781824188	4.52066918888609	-2.72750757796093	7.30023973751362e-12	1.21245179257292e-09
Merged-chr1-150404011-3	chr1	150403510	150404510	+	665.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133780, exon 7 of 52)	exon (NM_133780, exon 7 of 52)	-10930.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	5.0081333719789	5.33303019790524	5.09444709058051	5.63817314884716	5.60569345204624	5.59748897675843	0.887413570895809	0.0106228909762032	0.104877730463682
Merged-chr11-69670767-3	chr11	69670222	69671222	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144958, exon 3 of 11)	exon (NM_144958, exon 3 of 11)	1701.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	7.05681467656903	7.02515788564228	6.60102261759278	6.95205524858103	7.0318482628751	6.60631524973674	-0.0531238975353647	0.851656193827365	0.96531854415899
Merged-chr16-16896504-4	chr16	16896012	16897012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176833)	promoter-TSS (NM_176833)	43.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	4.49942075876668	4.51443813800858	4.59598937789974	4.53364694160531	4.40119998210544	4.3181413931064	-0.277667671885217	0.518588367048695	0.845379402570143
Merged-chr5-90882673-2	chr5	90882173	90883173	+	976.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8572.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	6.3890872500841	6.2424507909656	5.88466760625346	5.11745460775377	4.70425848924427	5.14479678410799	-2.3143153464138	2.18364649542965e-10	2.69180529765496e-08
Merged-chr5-100500023-4	chr5	100499513	100500513	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359914, intron 1 of 13)	CpG	626.0	NM_172714	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	7.15112171023518	7.22174833602579	7.09320152287478	7.19645852303178	7.16739789858066	6.88580750439021	-0.0910665974339331	0.710741796579194	0.924457628489989
Merged-chr9-105502573-3	chr9	105502093	105503093	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	-7460.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	3.3351699280515	3.43565100838235	3.449932965429	4.10282113872144	4.27368814794443	4.62804762944143	3.18577712560476	2.20687252550509e-07	1.42569448060736e-05
Merged-chr2-130733666-4	chr2	130733163	130734163	+	937.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-36144.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	5.73926492366611	5.37749717975863	5.4890657627919	6.1191819132789	6.01123803391826	5.69927686273097	0.750212856137814	0.0247794494303958	0.186020247943375
Merged-chr11-97744070-5	chr11	97743625	97744625	+	802.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106180)	promoter-TSS (NR_106180)	579.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	6.19866946032155	6.36260229597146	6.41398163445437	6.21488259828094	6.51156436931336	6.28207431287758	0.0437572492674407	0.877354057429105	0.971560353131186
Merged-chr2-167756158-2	chr2	167755658	167756658	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64981.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.70756155069412	3.61404815156023	4.11072010619471	4.01122976330778	3.69112104694132	4.45498920275394	0.777940289849352	0.18590629783342	0.570234334804567
Merged-chr7-24081838-4	chr7	24081337	24082337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045486)	promoter-TSS (NM_001045486)	-60.0	NM_001289640	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	5.45203869950881	5.49139746764619	5.7394018447709	5.9116905073169	5.73716597225819	5.75021212386591	0.452086085588454	0.157967461901274	0.52951777209407
Merged-chr4-142054235-3	chr4	142053737	142054737	+	767.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-30061.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.0866377933372	4.32030261047357	4.24593373318682	4.37396941451943	4.10639874776212	4.44230273665402	0.230086328711037	0.626140136684538	0.892819497179456
Merged-chr4-134160241-1	chr4	134159741	134160741	+	677.5	f0_c57.idr	intron (NM_144527, intron 3 of 13)	RLTR4_MM-int|LTR|ERV1	26844.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	3.23803044610002	3.40402845716624	3.43530928539022	4.71333408289926	4.97696680823928	4.0162550768672	4.49844255455363	1.32202862647547e-09	1.42497321744287e-07
Merged-chr11-54092398-3	chr11	54091893	54092893	+	964.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8531.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	7.47194703050513	7.55659534711077	7.27546937155797	7.63003321167313	7.86853727576981	7.18220108482227	0.230485271073664	0.40019984517792	0.77638266110756
Merged-chr11-97556650-2	chr11	97556150	97557150	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	18476.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	4.23361492357097	3.81451214706674	4.62990859268144	4.53891484073243	4.34434836282789	4.54396791232531	0.557670687213851	0.284448072551016	0.68222278905903
Merged-chr4-126202832-4	chr4	126202336	126203336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146153)	promoter-TSS (NM_146153)	-126.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	8.52013162470175	8.53881696376709	8.33869960181755	8.40415270456572	8.52620879737143	8.28247072933395	-0.0833822458818053	0.693107868838345	0.918830576287622
Merged-chr2-132019424-4	chr2	132018873	132019873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	10615.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	6.42947079003325	6.4828921569185	6.5373900881783	6.41640074350745	6.71720581026104	6.94012849521618	0.35374243601574	0.208089900374283	0.599001744632372
Merged-chr17-32281590-2	chr17	32281090	32282090	+	648.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	B3A|SINE|B2	2533.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	5.38149451735014	5.37361838568184	5.73433304967227	5.44291147199283	5.50615229319013	5.69680343560049	0.0986705262508969	0.772903617942583	0.943931380748419
Merged-chr2-164952810-2	chr2	164952310	164953310	+	985.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013599, intron 9 of 12)	intron (NM_013599, intron 9 of 12)	4591.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	2.19237231897029	1.93971731693752	1.98927211657488	2.34744659798027	2.17350175049238	2.34105910861918	1.79775403868336	0.068501892139753	1
Merged-chr6-113062461-3	chr6	113061953	113062953	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	14791.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	5.77516387691649	5.94474824505263	5.81059587163308	6.2255821861287	6.29851678999917	5.87295674307632	0.534788216183906	0.0826552409459809	0.380354899271827
Merged-chr15-66804717-3	chr15	66804219	66805219	+	689.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27110.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.00657205443424	3.93117972740652	4.30584550557211	4.18037984361684	3.77302849085394	4.37205876659474	0.111471820067786	0.83433262453849	0.961273502395445
Merged-chr11-88999430-4	chr11	88998924	88999924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	21.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	8.3337724441341	8.42029650385558	8.25997571297313	8.43633485819335	8.89403299553157	8.16063814047607	0.280264796519915	0.280825464027833	0.678935561229273
Merged-chr7-114563771-2	chr7	114563271	114564271	+	991.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177382)	promoter-TSS (NM_177382)	-799.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	3.96144559411091	3.94860746028798	4.04588631091361	3.89404540765737	3.6884829846317	3.92397833450775	-0.47119008767327	0.357079733358204	0.743726917541594
Merged-chr13-45394365-7	chr13	45393847	45394847	+	893.0714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	4605.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.22884390215836	5.35919569425355	5.25078003958728	5.00228794813904	5.09695616627985	5.08159730853642	-0.455973749322361	0.198194419810775	0.586445873078056
Merged-chr5-33821168-6	chr5	33820647	33821647	+	873.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21965.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	5.35076870327408	5.34045772807373	5.46091842584378	5.49374464081479	5.2581157440359	5.46604208564745	0.0439896998988481	0.896817897154786	0.97587199430405
Merged-chr8-4165358-3	chr8	4164876	4165876	+	708.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1191.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	2.55353043988297	2.45008282662034	2.70707500550118	2.67123485713767	2.6334874652933	2.59350462728918	0.368881583596303	0.632005644027912	1
Merged-chr17-46640124-4	chr17	46639614	46640614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 4 of 15)	intron (NM_001357130, intron 4 of 15)	5966.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	5.88600882550121	5.87812830398076	6.06541009740391	5.9951362220485	5.98326400251586	5.79474112545392	-0.00788397331339788	0.979010139162584	0.995160277495735
Merged-chr7-83658840-4	chr7	83658338	83659338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-3343.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	7.19151544027494	6.9561821485758	7.05117206988554	6.80016355614588	7.10945642664877	7.12165431520671	-0.0784682005406807	0.758839658727339	0.940310803499772
Merged-chr14-77905533-4	chr14	77905051	77906051	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1312.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	5.96485268314027	5.77393841920495	5.48431829001279	6.6871182521536	6.78429783935757	6.61160403419687	1.5447477809206	4.23866009707324e-07	2.5446639924767e-05
Merged-chr14-60251970-3	chr14	60251414	60252414	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-435.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	7.98236878663828	8.49533344949495	8.18482958642548	8.11828404771929	8.39720215769078	7.95312421230236	-0.0932016092859487	0.716067700263606	0.926567177471454
Merged-chr16-30385671-4	chr16	30385203	30386203	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	2827.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	5.87658052713454	5.90487287109117	5.89928820193585	5.7152106555874	5.85624302657382	6.21577633297852	0.0741353120344222	0.814714927882277	0.956369939298364
Merged-chr11-62006628-6	chr11	62006206	62007206	+	799.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	49943.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	6.90573075756784	7.54509425339846	7.17281525617945	6.58262465612631	6.87247996007048	6.57354962257266	-0.837157830411115	0.00449598362901308	0.0568018031456998
Merged-chr3-138442760-1	chr3	138442260	138443260	+	1000.0	f0_c57.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-333.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	6.63055869551658	6.92584205989569	6.45263537791027	6.54695980800309	6.73813757436016	6.29253570113619	-0.230375517434011	0.437920467633969	0.80033574800429
Merged-chr17-29347853-4	chr17	29347341	29348341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019880)	promoter-TSS (NM_019880)	91.0	NM_019880	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	6.08991698393659	5.82680131472924	5.82031929215056	6.15202898869683	5.62769242111309	5.88220751749023	-0.0375442930995422	0.909658533946581	0.979588798631091
Merged-chr6-120111730-2	chr6	120111230	120112230	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18350.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.77145514205819	5.69966205833407	5.66617562956355	5.7509569215475	5.77963487654542	5.46578155020863	-0.0568507159064469	0.858959779284974	0.967096846107709
Merged-chr7-122329296-3	chr7	122328791	122329791	+	909.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40166.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.03380155585081	4.97809132298131	4.48201485790788	4.90101039448312	4.5575364711449	4.64178420141339	-0.359426398854126	0.412546718106324	0.784551818322662
Merged-chr2-102999003-4	chr2	102998505	102999505	+	919.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74508.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	5.66340518631468	5.36732339355755	4.69931504817416	5.55336937943822	5.18105567268199	4.77086709286314	-0.18164699288548	0.813170835185819	0.955933854959943
Merged-chr3-51415929-4	chr3	51415369	51416369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-147.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	8.2266279787522	8.52202185564748	8.31659816308188	8.30483843770189	8.48258194079578	8.31123132857276	0.0119984449958281	0.955915212781921	0.989787698735885
Merged-chr4-99164341-1	chr4	99163841	99164841	+	881.0	f1_balb.idr	Intergenic	Intergenic	-29593.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.06416559141121	5.9001429380253	5.95644370181246	6.13286910874562	6.06425904508076	6.08597293144943	0.202894254487484	0.481292502011786	0.825021868263874
Merged-chr6-129472851-4	chr6	129472347	129473347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132130)	promoter-TSS (NR_132130)	-68.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	6.20333029498493	6.52232156684479	6.29738162629257	6.19690881544449	6.48219678226895	6.21346629179059	-0.0634351004135472	0.827913565439263	0.959584381371691
Merged-chr7-73569230-4	chr7	73568729	73569729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10834.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	4.41878392196108	4.19915871667417	4.58997635330181	4.77831247792507	4.9001336379495	4.65680291419898	0.9405735786228	0.0291563913204727	0.205081408065528
Merged-chr6-97295529-2	chr6	97294991	97295991	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-42711.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.99371164478187	3.9899217882087	4.27559775831411	4.22155711425797	3.89778155760068	4.30010601622917	0.163116841342809	0.745891878630829	0.936251303305737
Merged-chr1-181230240-2	chr1	181229740	181230740	+	757.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18262.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	3.38707172733098	3.27276274605325	3.61397595116572	3.28775159299163	3.15329759894956	3.25863782329855	-0.774981375408554	0.214187021410151	0.607411938158068
Merged-chr1-151579978-1	chr1	151579478	151580478	+	571.0	f0_balb.idr	intron (NM_022018, intron 1 of 13)	G-rich|Low_complexity|Low_complexity	8605.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.09506868656849	3.88544577036704	4.18208350558405	3.90590349264159	3.83860327423723	3.97432482680242	-0.456859687265736	0.364998560278511	0.75019645162727
Merged-chr14-52120354-4	chr14	52119850	52120850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168515, intron 4 of 24)	intron (NM_001168515, intron 4 of 24)	9447.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	5.30668641877186	5.47374138567429	5.40317442769191	5.65545338824197	6.11291137609767	6.25077273881467	1.14835696735531	0.0008208427347556	0.0154351824346992
Merged-chr13-64180426-4	chr13	64179912	64180912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 5 of 7)	C-rich|Low_complexity|Low_complexity	18546.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	2.4613749005763	2.46388465649416	2.75240525685865	2.56433012362742	2.48259989258214	2.76630643420854	0.251969184073102	0.750855470023778	1
Merged-chr1-170164519-2	chr1	170164019	170165019	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	10445.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	4.71538487377878	4.56734477359193	4.48853591992204	4.419252606524	4.63356030652723	4.96871619526708	0.204943623033386	0.64128991990846	0.898914298204935
Merged-chr5-130253418-4	chr5	130252922	130253922	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 2 of 4)	intron (NM_023248, intron 2 of 4)	2108.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	3.65732880243208	3.79083762405359	3.60566315589327	3.91867725669545	3.70224018513985	4.12017748985679	0.719204815751225	0.189990119637104	0.576160721436116
Merged-chr7-46033649-4	chr7	46033143	46034143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153057)	promoter-TSS (NM_153057)	-53.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	4.11867896874362	4.18329716109116	4.49848936411939	4.22020621872591	3.986476546529	3.94028868388008	-0.594751773784326	0.231241154582809	0.627093634603082
Merged-chr12-100732049-4	chr12	100731551	100732551	+	814.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6931.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	3.56692490198263	3.68373510155556	3.703522102357	3.68054264772205	3.68244810112292	3.91947205774292	0.362167261823691	0.504697340373166	0.837806481766929
Merged-chr11-69795416-4	chr11	69794896	69795896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291104)	TTS (NM_001291104)	541.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	4.67322922856382	4.52709292051409	4.58935746991793	4.67891061526063	4.58251514560403	4.48615688917069	-0.0239009518486956	0.954191582308181	0.989495550016789
Merged-chr11-76482379-4	chr11	76481877	76482877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12118.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.33341106152701	7.37578681444923	7.48686058094113	7.18078766778993	7.51927589455439	7.1393876058034	-0.141233220378784	0.569958266779591	0.868989234305015
Merged-chr12-40585801-6	chr12	40585288	40586288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139735.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	8.32319580346917	8.43332992182063	8.1138673432348	8.15610662849448	8.54721537513827	7.99888007025617	-0.0514602265516489	0.836665180357526	0.962001762335242
Merged-chr3-98039874-2	chr3	98039374	98040374	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	26336.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.11941084105361	3.06857439816108	3.473469388648	3.14344311180097	2.97797765506383	3.77710645070394	0.439149858903117	0.543658669208327	0.857551302506722
Merged-chr2-68383050-2	chr2	68382550	68383550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	88931.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.21107051203192	4.02670374890241	4.13348182569977	4.08759332495389	4.02781491497196	4.1080887257109	-0.153980351065639	0.747174358741259	0.936581057740955
Merged-chr6-129498031-4	chr6	129497536	129498536	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	9129.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	2.38965089493523	2.31700396091856	2.61846129397341	2.32794467829801	2.1099514737573	2.38269693746755	-1.1288456606388	0.203724545509845	1
Merged-chr19-10945521-2	chr19	10945021	10946021	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 1 of 3)	Lx|LINE|L1	3745.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	3.26191402086105	2.99538188499639	3.00702420044096	3.34454140013514	2.97054465498897	3.58083897618771	0.907434666322119	0.19806999603777	0.58628324251399
Merged-chr16-18423277-4	chr16	18422780	18423780	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-3137.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	5.8027675139586	6.12697073734725	5.86556415559541	5.81525779951736	6.16706213358946	5.87728032174833	0.0485043432040902	0.879030157002421	0.972074795996392
Merged-chr5-41707170-4	chr5	41706667	41707667	+	951.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132325, intron 1 of 5)	intron (NR_132325, intron 1 of 5)	524.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	5.87585103464886	5.66488954294008	5.18182400488198	5.64804558135003	5.51551104078258	5.76537738594707	0.0382635431404115	0.916401096340037	0.981249307342287
Merged-chr6-17655896-2	chr6	17655396	17656396	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18886.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.41890866524332	4.19861567491375	4.44497148591837	4.11665221877812	4.29893036425689	4.00466243370284	-0.536969566176142	0.262653266992618	0.660662685713974
Merged-chr3-52029864-4	chr3	52029367	52030367	+	782.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75139.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.18789052518261	3.85831027196758	3.92396186846566	4.10465508424259	3.65919454748839	3.89204737497967	-0.321024367815697	0.551924659338788	0.861546661145201
Merged-chr1-54924377-2	chr1	54923877	54924877	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	2010.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.38454621759688	5.48572095569317	5.64155279272781	5.27854534734	5.32099377031194	5.5177207732751	-0.257160419044677	0.448505587261013	0.80725470300829
Merged-chr10-123062209-2	chr10	123061709	123062709	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	14296.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	4.44475103336383	4.60609847509669	4.9030666472783	4.31966843910649	4.28905687209546	4.57264900313964	-0.657453991697535	0.144434809105673	0.507201164636624
Merged-chr19-46619057-3	chr19	46618552	46619552	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4349.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.00140408675441	4.88284039876473	5.19325133698472	4.9674661521237	4.93610174574628	5.09674085963849	-0.0566437991023738	0.880560347048024	0.972540920690587
Merged-chr5-74790447-2	chr5	74789926	74790926	+	756.200012	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87523.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	2.64005335081494	2.61505708126234	2.57173191761742	2.30805565577762	2.29737442939116	2.25306427131176	-2.30412635836234	0.0111559253583378	1
Merged-chr2-90516387-2	chr2	90515886	90516886	+	683.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-37212.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.23386637686005	5.30459280536225	5.1418703807847	5.58140551367786	5.24239018670766	5.09989311305487	0.191518872982021	0.601203270056261	0.881884913086671
Merged-chr1-57392698-4	chr1	57392208	57393208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13840.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	4.9896879311679	5.22902031656596	5.59898674558786	5.1863864524082	5.17775091847679	5.90954380747537	0.337889629996922	0.426396494263637	0.793775990271191
Merged-chr10-80808720-2	chr10	80808220	80809220	+	725.799988	f1_balb.idr|f1_c57bl6.idr	exon (NM_028001, exon 7 of 7)	exon (NM_028001, exon 7 of 7)	3472.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	2.52967237688285	2.42461362200558	2.76150982082746	2.6558420392183	2.41438692277826	2.39180276868341	-0.476779896332246	0.563217414678744	1
Merged-chr17-78264594-6	chr17	78264084	78265084	+	953.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	Tigger12A|DNA|TcMar-Tigger	64336.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.90681664993646	3.7043794475264	3.51190483021301	3.57960563880066	3.6781014445897	3.64052230876103	-0.306026811366301	0.587383603511855	0.875891047417763
Merged-chr3-8987225-3	chr3	8986727	8987727	+	758.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MER57-int|LTR|ERV1	16977.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.75620116819923	5.72833056579331	6.08138874107344	6.33671766576227	6.2380746329263	6.22497870058806	0.716392840898319	0.0160182290617722	0.138971561240515
Merged-chr17-74315446-2	chr17	74314946	74315946	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146224, intron 2 of 3)	intron (NM_001146224, intron 2 of 3)	765.0	NM_001146224	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	3.56549884806054	3.37899487160989	3.36382709100881	3.3849793988378	3.35173255420155	3.37846060297658	-0.274623291167581	0.643654790945006	0.899924854148708
Merged-chr6-108660520-4	chr6	108660017	108661017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-112.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	8.74923177925543	8.72163777226525	8.39090394691871	8.41445964687393	8.47144595807916	7.86459112267745	-0.483092437491112	0.0624597997326872	0.324862796359384
Merged-chr11-71817659-4	chr11	71817147	71818147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66632.0	NM_001357965	216881.0	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	4.79052608199404	4.72172914656787	4.36113153325352	4.71426296472407	4.83027406487619	4.4789078741501	0.102273869812199	0.816265573521049	0.956616423430214
Merged-chr9-118807830-3	chr9	118807317	118808317	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96125.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.62508636571597	4.31634495043872	4.55642000339404	4.5493451169633	4.116453406188	4.32384834145348	-0.42498643582066	0.362116412221672	0.747675323428227
Merged-chr5-21053824-2	chr5	21053324	21054324	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	2087.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	5.53452317792339	5.60862294673883	5.65387204419144	5.24351339836585	5.71078572189351	5.00812142730334	-0.422191721625062	0.271657835912337	0.669017823736756
Merged-chr2-79621594-4	chr2	79621097	79622097	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13828.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	3.96923224719256	3.92401090000021	3.89070138445147	3.47064472451735	3.50316338276053	3.41805858405774	-1.60648492536694	0.00449784944673383	0.0568089035767803
Merged-chr2-132110906-4	chr2	132110399	132111399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	34209.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	7.09789515294677	7.06638540931197	6.705947039159	7.17653360814986	7.50903614314529	6.54477098259871	0.265470631989223	0.418482898714695	0.788591657834186
Merged-chr15-6340545-4	chr15	6340021	6341021	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40732.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.74319273052808	5.66894682940834	5.68945739337201	5.18288407518265	5.32857205417819	5.56558171444998	-0.650617752405976	0.0513291241881291	0.288834365689176
Merged-chr4-39614108-2	chr4	39613608	39614608	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	163815.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	3.90630018985026	4.01399560251574	3.9985513497718	4.41072509526525	4.74152106347334	4.07076044976028	1.30792169066194	0.00977382910115847	0.0989535319480711
Merged-chr2-113446577-2	chr2	113446088	113447088	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	5524.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.30496171734516	3.76488400248761	3.58460010628251	3.17531371127728	3.46485216101102	3.20046308600827	-1.0248191083676	0.11848178216121	0.459921210483695
Merged-chr13-23738830-4	chr13	23738322	23739322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015786)	promoter-TSS (NM_015786)	15.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	7.74236288737696	7.8621146829306	7.88121310367245	7.78799150212282	8.15108464001198	7.91394907850653	0.19501237319803	0.394336045665552	0.772286791085834
Merged-chr3-137938688-3	chr3	137938157	137939157	+	895.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 6 of 8)	intron (NM_011932, intron 6 of 8)	20102.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	2.47333406070723	2.46498715908392	2.5890337676886	2.30894627055292	2.26203592253777	2.6621394841622	-0.55757463565531	0.509915669581089	1
Merged-chr9-44192881-3	chr9	44192387	44193387	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	L1MB4|LINE|L1	41159.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.17786144901389	5.18516860939469	5.07957144054179	4.96271654503973	4.92546658284012	5.24136114972605	-0.238022216459545	0.519298474747483	0.845725113262126
Merged-chr17-35077560-1	chr17	35077060	35078060	+	678.0	f1_c57bl6.idr	intron (NM_027366, intron 1 of 2)	intron (NM_027366, intron 1 of 2)	618.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	5.20905076144583	5.36984660548069	5.09319853984094	5.29761187496496	5.42710468491239	5.44816777351677	0.305487037121986	0.381320099056397	0.763080052613635
Merged-chr15-50820377-4	chr15	50819883	50820883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	68666.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.57779247361613	6.3678979545967	6.41996852875748	6.29792130837271	6.20260557336693	6.20263208762797	-0.370160979511562	0.176103042429682	0.556287990375801
Merged-chr16-8847519-2	chr16	8847019	8848019	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 3 of 3)	tRNA-Ala-GCY_|tRNA|tRNA	17419.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.50411548839299	3.86249108155112	3.83513928300846	3.97464440514338	3.66975374241659	3.6423049315924	0.0965537481067624	0.86450455688169	0.968291113794295
Merged-chr18-44714622-3	chr18	44714132	44715132	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-52366.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	2.72110633283149	3.02920063377882	3.14686385241284	2.58498888083995	2.81004046680663	2.87845951953668	-1.05038675734588	0.173434385285864	0.552239718768797
Merged-chr2-118745665-4	chr2	118745174	118746174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-84.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	4.87941301660923	4.60667590817472	4.70040490061392	4.5477653110123	4.50718463958908	4.60641375071114	-0.44235988461149	0.285844284129323	0.683267198903554
Merged-chr11-69582025-2	chr11	69581525	69582525	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	1666.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	6.4012502733972	6.68643435572196	6.17456589977616	6.39423878205841	6.73755606804292	6.40009918304226	0.13170059677551	0.663328129460321	0.907142972127644
Merged-chr11-96916138-3	chr11	96915642	96916642	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	CpG	372.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	7.33452733989017	7.06185187104569	6.99474926191828	7.07707169601988	7.22261771876957	6.90932807274904	-0.0906163637693573	0.725499560010078	0.929698613727862
Merged-chr3-9644436-4	chr3	9643940	9644940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34355.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.06408367587539	3.98392984753982	4.17159137741758	3.70195389984011	3.90749600434301	3.96372000880109	-0.63563316581264	0.212218828222836	0.604612211832013
Merged-chr2-58920335-3	chr2	58919808	58920808	+	936.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	165124.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	7.60572970306834	7.73232472062782	7.20119049422943	7.46108065136771	7.72696893562717	7.02628800309544	-0.133935791361612	0.648824950510641	0.901963404198945
Merged-chr5-17843452-4	chr5	17842952	17843952	+	864.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6340.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	4.51268214019019	4.46115310034291	4.20421714212081	4.80980547040022	4.86463321404658	4.56002157810128	0.843945402195403	0.0543481745636592	0.299381422526807
Merged-chr18-65495973-4	chr18	65495497	65496497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	65000.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.09847578226522	6.07416057362627	6.2319037851882	5.15030385750977	4.86260324440993	5.10992058005084	-2.09569944799634	5.53215565336406e-10	6.30574804938517e-08
Merged-chr14-73378965-2	chr14	73378465	73379465	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	6324.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	4.82899725128447	4.97168102917341	5.06526108790452	5.01375713618225	5.2753204261417	4.91448357946456	0.290893882564614	0.449285879945964	0.807677904734559
Merged-chr7-29784016-4	chr7	29783524	29784524	+	974.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360207)	promoter-TSS (NM_001360207)	56.0	NM_001360209	22693.0	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	5.12122350977662	5.11096352125181	5.17219246434284	4.28812880094891	4.00346941815686	4.27302784570403	-2.37275184737329	7.26967740862596e-08	5.34359821393064e-06
Merged-chr7-89481935-3	chr7	89481437	89482437	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35649.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	2.95273284588813	2.81441808527147	3.06356573666078	2.66552960322139	2.67477465214226	2.78380781354311	-1.24312471602103	0.0913737307932798	0.402319049203473
Merged-chr6-54285158-4	chr6	54284663	54285663	+	938.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	12341.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.55583592279805	6.49878719939602	6.23040527041289	6.09158173769321	6.47646907414569	5.96643565033058	-0.378056053242889	0.223301435933155	0.618087468987021
Merged-chr17-70988286-2	chr17	70987786	70988786	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	2230.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.46665947745499	4.95997944326591	5.5143686894351	5.39274416407986	5.2966290689162	5.40691133916516	0.0658210713362525	0.860242192291958	0.967441103100897
Merged-chr5-3363671-2	chr5	3363171	3364171	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	19778.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.16075128966227	2.21256313142362	2.25852123373983	1.94148289607901	2.02517292905736	1.92881811000594	-1.97386770164716	0.0501186288416313	1
Merged-chr11-119952511-3	chr11	119951937	119952937	+	938.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	9345.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	4.59820745960103	4.67077908299536	4.65499462842511	4.92084882510055	4.70181627738581	5.01423343246092	0.540146079451759	0.180284131669779	0.562006669712986
Merged-chr18-9485440-4	chr18	9484936	9485936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35282.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.14807159476143	6.03748841731727	5.1882255471513	6.03044942113826	5.84638572063866	4.95694443307776	-0.300094585425047	0.728648170394308	0.930478966998914
Merged-chr10-25433731-3	chr10	25433214	25434214	+	658.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	25346.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.43004773209835	3.79374115626195	3.35455451270612	3.34957093153857	3.17876166941023	3.68942492998836	-0.490075339050178	0.452869050844891	0.809457484278845
Merged-chr17-26500473-4	chr17	26499950	26500950	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	8022.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.05867742576736	3.96137379307833	4.3691823498655	4.0448456079146	4.20149149638588	4.18148920479833	0.0428718110967782	0.930442195847134	0.984526803312032
Merged-chr11-63948593-4	chr11	63948095	63949095	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15631.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	3.50837149503553	3.36239911782392	3.79114780412566	3.50232744212449	3.75798994414821	3.81181978999242	0.480893616745922	0.411005590130418	0.783785606749474
Merged-chr11-76541146-3	chr11	76540639	76541639	+	871.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	30245.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.04046458975538	2.03493050871728	2.13455848965711	1.8134344777608	1.77471033541566	1.87384534653379	-2.41740311605967	0.0251118948235057	1
Merged-chr16-70326789-4	chr16	70326284	70327284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	L1MD2|LINE|L1	12835.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.26136593316622	4.92029981537236	5.15627804501369	5.18364278779097	5.86700908871655	5.38343391728017	0.798400212702977	0.0435859444102852	0.262366077221601
Merged-chr7-30650283-4	chr7	30649770	30650770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-42.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	7.47298894556027	7.73797901601591	7.44473109020625	7.59095117270126	7.76023724805686	7.95385753771983	0.305380485937249	0.208019788631046	0.598882796083733
Merged-chr16-23375082-4	chr16	23374584	23375584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-54049.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	6.98122512817212	6.94033906581829	6.76636757903573	6.94018903555592	7.12875327639082	6.74468743386824	0.0823081313247851	0.752314312643115	0.938157651950668
Merged-chr14-61972254-2	chr14	61971755	61972755	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289882.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.86948315689699	7.34615476012844	6.84877170225236	6.91732064182787	7.20569916995299	6.66222449324018	-0.139255942000346	0.640899049006903	0.898669184371116
Merged-chr15-8709915-2	chr15	8709415	8710415	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 1 of 9)	intron (NM_148938, intron 1 of 9)	892.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	5.04863189022829	4.8977730863435	4.71631559391597	5.38547333273122	5.17148334077047	5.2302469761239	0.753236784832528	0.046475178038583	0.272774459467123
Merged-chr7-28391859-3	chr7	28391378	28392378	+	873.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 1 of 3)	PB1D9|SINE|Alu	812.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	5.75114123572395	5.66295613275238	5.56063718858766	6.02791806219588	5.95093625979965	5.96359834605272	0.560669679122648	0.0645952953938747	0.331208118014144
Merged-chr10-84339812-2	chr10	84339312	84340312	+	885.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100659.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	7.08496044325704	7.13695725177785	6.89078234928296	7.11510471663575	7.20329254960592	6.62026861970671	-0.0450827051500286	0.871619480109147	0.970227816594767
Merged-chr10-77967271-4	chr10	77966761	77967761	+	807.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	2611.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	5.49945682978409	5.72469619092424	5.59613565591491	6.3846495872395	6.11933063085576	6.04465518966121	1.02319218213668	0.00103243868687093	0.0184690936748765
Merged-chr3-115682539-4	chr3	115682041	115683041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	32514.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.7985913627223	5.50588988495504	5.59054340251627	5.53129051818813	5.0278974003737	5.1540097053498	-0.743262898507937	0.0423849036147595	0.257986545003525
Merged-chr19-43669587-4	chr19	43669089	43670089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	5292.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	5.10847028958117	5.03820907367648	5.54226117392512	5.44353744579428	5.77084197937755	5.75680009247392	0.835082179883374	0.0219682468752535	0.171882026068073
Merged-chr1-171382273-4	chr1	171381776	171382776	+	911.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122680, intron 2 of 7)	B2_Mm1t|SINE|B2	-6684.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	3.89947513503563	3.70761440289384	3.88473097641274	3.59654414490411	3.7123361526708	4.08965795421563	-0.0757661566383342	0.890731974437706	0.974557844397176
Merged-chr6-39278531-4	chr6	39278027	39279027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71754.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.91485261938835	5.43480038095518	5.50817968026803	4.92660309266725	4.4322730374689	5.26709001192177	-0.828218537404107	0.0712374263297091	0.350098858309754
Merged-chr11-98808582-2	chr11	98808082	98809082	+	883.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361931)	TTS (NM_001361931)	-1226.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	4.48488163186067	4.59129468373146	4.95199365752947	4.74868365195337	4.74118474834739	4.73041228750741	0.145633205056707	0.728747413241002	0.930478966998914
Merged-chr10-128459659-2	chr10	128459159	128460159	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_106183)	TTS (NR_106183)	423.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	5.41197653354603	4.89278615356253	5.50737416743982	5.5224894799051	4.93947158999188	5.37219172473116	0.00819231761169312	0.984229049620806	0.996528768947178
Merged-chr11-6417094-2	chr11	6416617	6417617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	1247.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	5.83450795813408	5.88573582129578	5.97911689674664	5.83948243216431	5.83061684572276	5.94867451328519	-0.0481618501577139	0.871394546498635	0.970222087171093
Merged-chr4-139576071-1	chr4	139575571	139576571	+	544.0	f1_balb.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	1351.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	3.36730126114644	3.04997487572508	3.03258999321507	3.49316245725	3.46152389250608	3.41091256852976	1.16421347507347	0.0752193609202912	0.361187240990106
Merged-chr18-61210443-2	chr18	61209943	61210943	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	1153.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	3.73652737885524	3.7713879796031	3.71987390259851	4.1457379364304	3.97272091805934	3.89742676545098	0.836353726760695	0.104722001272713	0.431833169262442
Merged-chr5-117159980-4	chr5	117159490	117160490	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	26402.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	7.61254809598455	7.57939227385661	7.36707008648962	7.38288899409536	7.53472863378489	7.13301463296081	-0.232581452977326	0.346467988838231	0.734677492075457
Merged-chr11-55463163-4	chr11	55462666	55463666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1958.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	5.72093011181796	5.40058786998578	5.87743477099028	5.45218373005151	5.61547158984984	5.96008649372587	0.0214095785327908	0.951804805928143	0.988958496187269
Merged-chr19-40995780-3	chr19	40995270	40996270	+	875.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1235.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	3.40027156740382	3.71491889064895	3.55183018411659	3.6082717650105	3.42247780256858	3.33747322005172	-0.366988575072108	0.53848973535749	0.855203059561888
Merged-chr7-135605239-4	chr7	135604743	135605743	+	852.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-585.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	4.47059702838374	4.49368483931945	4.8769437455088	4.3581491102066	4.32972923807278	4.65908320670089	-0.417184542671853	0.355096134046912	0.742091076566031
Merged-chr4-138304675-4	chr4	138304159	138305159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-79.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	4.94939441121012	4.46353238938545	4.97366580626988	5.07046627107743	5.16072402826729	4.85493129240318	0.507456619595048	0.225250487942754	0.620063864646258
Merged-chr10-7833210-3	chr10	7832700	7833700	+	802.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	730.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	6.62760449866325	6.33718165541139	6.32865740130072	6.23958607789264	6.39672047450639	6.4266180670308	-0.143761142908683	0.608630629350282	0.885006356798728
Merged-chr6-124496554-2	chr6	124496054	124497054	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	MLT1A0|LTR|ERVL-MaLR	3441.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	3.39284405830552	3.7647969136854	3.62144421120541	3.75737909971378	3.93770169882062	3.52461187723245	0.532423000779278	0.367196801127172	0.752113401392775
Merged-chr2-93192809-1	chr2	93192309	93193309	+	583.5	f0_c57.idr	intron (NM_001356537, intron 2 of 8)	intron (NM_001356537, intron 2 of 8)	5261.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	2.4751104562523	2.43849191569297	2.29135639475303	2.67570399282025	2.45234132760944	2.69669576218073	1.21102780144283	0.148965888975544	1
Merged-chr17-88524266-3	chr17	88523764	88524764	+	636.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5860.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	2.28447305967363	2.28843801219495	2.55882364319072	2.22917567974739	2.48812779494951	2.31682305577287	-0.168015452446286	0.846155164333551	1
Merged-chr1-93754092-4	chr1	93753589	93754589	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174874)	promoter-TSS (NM_174874)	749.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	5.07125222702283	5.15191088070315	5.20202168028717	4.79448736277329	4.87915996620393	5.07133266748024	-0.487643419668367	0.191026046424625	0.577558823376959
Merged-chr10-108178589-4	chr10	108178095	108179095	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	RSINE1|SINE|B4	16195.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	4.53698640832383	4.63125068758101	4.60933390056629	4.65805822322747	4.59134311400379	5.09599862644726	0.458048565614267	0.285981236072267	0.68342985932029
Merged-chr3-154305613-4	chr3	154305129	154306129	+	875.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010713)	TTS (NM_010713)	24931.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	3.27473709867533	3.32237416323667	3.33061189690402	3.58073226067526	3.20265381223084	3.033373770486	-0.049243677370637	0.940837740825286	0.986888338850358
Merged-chr4-129033292-4	chr4	129032785	129033785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	8.87932434915179	8.74124270352061	8.42623808466306	8.51444431603147	9.0339671354352	8.43436278823098	-0.00405019174809121	0.987712421872383	0.997223245230291
Merged-chr5-32734144-2	chr5	32733636	32734636	+	907.099976	f0_balb.idr|f1_balb.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	12206.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.12480876940483	3.24757471008756	3.15805992376286	2.5851376056915	2.63056079140596	2.87585008698266	-2.69056274354263	0.000984772263887699	0.01779390456755
Merged-chr15-101260436-2	chr15	101259936	101260936	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-6410.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.18449043372255	2.94335842185847	3.20928273343124	3.35468302616969	3.11733983345478	3.44465419756468	0.805167229816383	0.221048361309367	0.61561513090473
Merged-chr14-25468739-2	chr14	25468239	25469239	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	9554.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.48331676939972	4.67289513429264	4.25008536510629	4.01370182969341	3.76650178552446	4.02523796759871	-1.58012574427342	0.00148839268478862	0.0245998103282445
Merged-chr10-80348517-4	chr10	80348027	80349027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285435)	promoter-TSS (NM_001285435)	-79.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	3.20177469305931	2.88256371521626	3.24020790436491	3.02262153901867	2.73843957586326	3.14569956693988	-0.63524333756058	0.37984987049551	0.762117766786999
Merged-chr17-33826518-2	chr17	33826013	33827013	+	659.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_103515)	TTS (NR_103515)	1868.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	3.64658052284626	3.60587223458788	3.61586236297264	3.78639461804972	3.67106426449047	3.63248717154785	0.260800129443242	0.630820857345337	0.894912420650784
Merged-chr1-194976398-4	chr1	194975926	194976926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033564, exon 1 of 5)	non-coding (NR_033564, exon 1 of 5)	533.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	7.4188665254153	7.51121165350808	7.16757155222922	7.12666389349757	7.00653124433854	7.11107548630749	-0.451677659345025	0.0632758962074749	0.327612517679769
Merged-chr3-95042614-4	chr3	95042116	95043116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-2.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	7.30816269328169	7.74310105774544	7.42810968680782	7.66308225982976	7.80459222311853	7.36339606599292	0.175047786522544	0.503706468002131	0.837146033423024
Merged-chr6-88903449-1	chr6	88902949	88903949	+	680.0	f0_balb.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1198.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	7.95462831949998	8.26409000448849	7.79585901242232	8.08702781599835	8.42212566367364	7.79887479196973	0.158966420423328	0.555972964017667	0.86353030537374
Merged-chr11-51604142-2	chr11	51603642	51604642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028398)	TTS (NM_028398)	2739.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	3.10849677510047	2.71006908606464	2.69368764386722	2.94767398099791	2.85776206452219	3.02086424644888	0.402160773021474	0.592631608851707	0.878142077122388
Merged-chr15-80025893-4	chr15	80025379	80026379	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11071.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	4.80122245093392	4.38843488795928	4.19333748956599	3.87841044922324	3.65584782316646	3.78761812505392	-2.12563139226306	7.39274426033302e-05	0.00219456105748766
Merged-chr4-118429580-2	chr4	118429080	118430080	+	725.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039176)	promoter-TSS (NM_001039176)	-121.0	NM_001039176	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	3.46549561598463	3.69405699456978	4.05241891471942	3.84977555293755	3.81741424257946	3.8907060156315	0.324769833450548	0.564774140811603	0.866552670637515
Merged-chr7-43636346-4	chr7	43635822	43636822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 1 of 5)	intron (NM_028236, intron 1 of 5)	1583.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	5.31620221416201	4.71542063012103	4.95434548837893	5.16515935818103	5.21892078237607	5.40915661549977	0.493268402180075	0.218279888451465	0.61244631861386
Merged-chr7-24380147-3	chr7	24379697	24380697	+	957.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 4 of 8)	intron (NM_001163510, intron 4 of 8)	9934.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	3.84382291963615	3.90270544714818	4.48552331260487	4.67124521009956	4.5274400859239	4.739872806132	1.44805623781075	0.00419020832205623	0.0538219904386623
Merged-chr2-25589331-2	chr2	25588831	25589831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-9232.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	5.87888747382287	6.20198615865417	6.33987158169247	5.93638701708429	5.96683965273641	6.12674132267252	-0.239251048444305	0.436674441636741	0.799551248563286
Merged-chr2-27354956-4	chr2	27354445	27355445	+	926.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	72663.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.08208899746359	6.22571262772679	6.31066610338616	6.24163206687742	5.88682845242707	6.29426022998527	-0.105889671709818	0.725539497728894	0.929698613727862
Merged-chr1-170896690-2	chr1	170896190	170897190	+	556.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11150.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	6.12695894266726	6.01534364542064	6.00982158268893	5.88268272689915	6.15547024769557	6.40977339224649	0.181223707037837	0.555114703343906	0.863170582969049
Merged-chr2-166786780-4	chr2	166786294	166787294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6973.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	4.8291277202843	4.7833050675197	4.36425799271907	4.54034818790177	4.57729731481929	4.38623626278227	-0.425741239316501	0.33676736062558	0.726839728152484
Merged-chr8-108783409-4	chr8	108782922	108783922	+	884.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	68778.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.9996680066544	4.63999033089692	5.02583200728746	4.59377789704331	4.33296356633648	4.44328272582698	-1.03981899457898	0.0161861412984591	0.139958063510567
Merged-chr4-3913643-4	chr4	3913138	3914138	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019969, intron 2 of 5)	intron (NM_019969, intron 2 of 5)	24767.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	3.26135563345099	3.25895091226395	3.36963890508309	3.39894190177549	3.25797962560901	3.08754252241525	-0.146700705065054	0.815978711023235	0.95657096937109
Merged-chr9-118621052-2	chr9	118620552	118621552	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	14343.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.14312356192374	3.12224048951633	3.68611856655348	3.30362627489996	3.00282453208894	3.18736890869809	-0.679108719468896	0.323026176977633	0.716449793892136
Merged-chr17-23677485-4	chr17	23676994	23677994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013749)	promoter-TSS (NM_013749)	-45.0	NM_013749	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	5.59225213216383	5.78769267131779	5.36500731290106	5.45912191118348	5.33119414315682	5.08447091048125	-0.573857726943708	0.10995521498833	0.443259712798868
Merged-chr2-32082534-2	chr2	32082034	32083034	+	818.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	1171.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	6.28960366964256	6.48352183608214	6.56315995673478	7.1333207063199	7.28099178155528	6.96369939507381	1.08233977810557	3.59726706561964e-05	0.00119680686923662
Merged-chr6-106787291-2	chr6	106786791	106787791	+	688.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021449, intron 5 of 10)	intron (NM_021449, intron 5 of 10)	12796.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	4.18582511181396	4.40851244880649	4.67917491480176	5.99782979873403	6.23805943192949	5.26813839422206	3.13531817777858	3.07254057261687e-12	5.40507306482674e-10
Merged-chr18-38249255-2	chr18	38248755	38249755	+	743.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024179)	promoter-TSS (NM_024179)	943.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	5.86295352995537	5.99364102891416	6.1485968125814	6.02967369039491	5.90746441907583	5.94539256507298	-0.0673194741669476	0.820945382449698	0.957917721861197
Merged-chr5-8312519-3	chr5	8311986	8312986	+	897.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 3 of 28)	MIRc|SINE|MIR	55674.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	3.31195263673836	3.61957846490015	3.97569404149163	3.0560083885834	2.90438521136674	3.20253480114596	-2.58412117896781	0.000363323869348536	0.00814424906270284
Merged-chr10-111465010-4	chr10	111464503	111465503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8224.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	5.02708715597915	5.00336310224496	4.9539977503568	5.44761950831106	5.4454975720957	5.29788880252144	0.827844816293411	0.018423091659283	0.153043831734001
Merged-chr15-97790295-4	chr15	97789840	97790840	+	841.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 2 of 2)	intron (NM_026353, intron 2 of 2)	5975.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	3.33945116799807	3.08840077244938	3.30675665170563	3.14010100775235	2.94434505189462	3.3232514427377	-0.467969479451358	0.481445247391753	0.825079730294173
Merged-chr4-43531144-2	chr4	43530644	43531644	+	629.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011602)	TTS (NM_011602)	-7590.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	2.99485425664349	2.719657908138	3.06296668582612	2.91278206583515	2.85389019429485	3.18963005568371	0.268083175881475	0.709230109641597	0.923935571500538
Merged-chr10-94462415-2	chr10	94461915	94462915	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-52442.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.60377990534784	7.59619055762016	7.02547239747449	7.22505537794896	7.52952705545716	7.04094053884894	-0.228027278812769	0.428521461627317	0.795368392855003
Merged-chr11-23805986-4	chr11	23805493	23806493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	3.57447937267161	3.8633999986339	3.42447641881955	3.44272932029542	3.20969331954638	3.38006081123783	-1.11085844450759	0.0715883703553093	0.350994350393293
Merged-chr6-134615449-4	chr6	134614940	134615940	+	973.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17048.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	4.79736550768899	5.05930371751041	4.66912554899532	4.93235934600658	4.76728158575139	4.4671590675646	-0.262695182556522	0.539613835764362	0.856052391666911
Merged-chr3-103123872-2	chr3	103123372	103124372	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3684.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	3.60374482533917	3.55123913686449	3.38221190114754	3.08018824357311	3.12027039663162	3.39803847087311	-1.29725548664051	0.0416267687336155	0.255078412897613
Merged-chr3-30860878-3	chr3	30860366	30861366	+	976.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286994, intron 1 of 3)	Lx8b|LINE|L1	4916.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.58155783560368	3.81283294058414	4.12904622050932	3.68755358979854	3.47833751373909	4.31450818964109	0.0524816634659991	0.933309473512852	0.985392902830318
Merged-chr5-43879990-4	chr5	43879499	43880499	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	11190.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.55358143909478	7.45751911223084	7.57836430665365	7.44160573732033	7.78116261683893	7.52825665918001	0.101290667484142	0.666865060347831	0.908441380157861
Merged-chr13-107781969-4	chr13	107781466	107782466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	94569.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	4.1378769288391	4.12924828493087	3.85625025244848	4.01172281109141	3.90201651896299	3.87402453119847	-0.371386766509378	0.462628384841841	0.815351661567396
Merged-chr13-29983728-2	chr13	29983234	29984234	+	890.583374	f0_balb.idr|f0_c57.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	657.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	6.80938068511639	6.82867392064443	6.67454748444037	6.95208568386579	6.54993972864763	6.76533497279961	-0.0232580234707969	0.930689546924368	0.984649701786071
Merged-chr7-28392307-2	chr7	28391807	28392807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019458)	promoter-TSS (NM_019458)	383.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	6.59538285609605	6.67972347130048	6.71003602417698	6.77155130901495	6.70758089197473	6.68918899943862	0.100545723442827	0.689144543181977	0.917315978773111
Merged-chr1-156459844-4	chr1	156459350	156460350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	14478.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	6.90731015461339	6.78068489491092	6.62085565564076	6.58409047176663	6.89260810372466	6.22739207869377	-0.261044771493994	0.386599677628966	0.767131316757601
Merged-chr5-35756541-2	chr5	35756041	35757041	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1339.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	3.02669383951457	3.02334368216178	3.08906694888177	2.83756623039836	2.55142384902695	2.98839117842128	-1.24132861410825	0.104304975592713	0.430850808504477
Merged-chr17-74880250-4	chr17	74879753	74880753	+	822.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125276.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	4.24751074314453	4.02603057929406	4.12333896849592	4.62401326907951	4.65457744152785	4.55583737806855	1.25052740336857	0.00533431354714628	0.063974857542656
Merged-chr8-117295824-2	chr8	117295324	117296324	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	38805.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.63450213213438	3.76938296908172	4.03237924502642	3.60368665602713	3.59289732133987	3.96622350975078	-0.297853320090608	0.597096882949261	0.880155708648303
Merged-chr1-87758540-2	chr1	87758032	87759032	+	634.25	f0_balb.idr|f1_balb.idr	intron (NM_029846, intron 1 of 17)	intron (NM_029846, intron 1 of 17)	2521.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	2.94248955324186	2.82956393666997	3.27595480299366	2.70102234887254	3.04850782831803	3.29428993807473	0.0322085459444428	0.966412353162368	0.992302763946523
Merged-chr10-118093454-2	chr10	118092988	118093988	+	625.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48299.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.66118203400425	3.46525124679471	3.96212577634969	4.44337480317576	4.35798913835011	4.51394353100368	2.25034018399835	2.90384136834045e-05	0.00100092308441124
Merged-chr15-62043381-4	chr15	62042877	62043877	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4120.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.52561464624558	6.62338473117376	6.42922869889858	6.74939149676773	7.03076883004881	6.73350979466835	0.503050586902944	0.059005624571449	0.314424592336928
Merged-chr5-102069442-4	chr5	102068934	102069934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	CpG	487.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.69876072977866	7.06533949529104	7.4424918263969	7.87129887427809	7.38343539453721	7.54997958765594	0.27420335117673	0.337046253187697	0.726967303521227
Merged-chr13-20125926-1	chr13	20125426	20126426	+	657.333313	f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	RLTRETN_Mm|LTR|ERVK	35419.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.54358307480072	4.41381484681308	4.50943435697946	5.03648335076133	5.06130657311606	4.86349384321522	1.17689900315372	0.00331665239616975	0.0453379353672569
Merged-chr8-26685299-1	chr8	26684799	26685799	+	711.333313	f1_c57bl6.idr	Intergenic	MER58B|DNA|hAT-Charlie	139124.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.12607672993406	3.62838723735324	4.15024263721249	5.04379524434287	4.83715275554133	4.27385884117444	2.02600150617377	0.000201316302694292	0.00504248251492673
Merged-chr12-108640122-3	chr12	108639523	108640523	+	717.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	4270.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	8.30942009749718	8.62732164987576	8.16136772282862	8.32658443197872	8.70286638999428	8.11038525116691	0.0356266408733577	0.891995411207967	0.974942585822634
Merged-chr1-88218664-2	chr1	88218164	88219164	+	672.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_201641, exon 5 of 5)	3' UTR (NM_201641, exon 5 of 5)	6705.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.57566945437835	4.23489369727443	3.79877090065726	3.85697514202405	3.87116875536185	4.11267092162366	0.121157655714171	0.8323954745159	0.960616839788396
Merged-chr1-152581305-4	chr1	152580815	152581815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43902.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.22903351418728	8.00141417786614	7.85795557997505	8.14094326486791	8.23105064783033	7.80258270911807	0.0493086203613448	0.839547512278852	0.962784121274377
Merged-chr9-83548329-4	chr9	83547822	83548822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172507)	promoter-TSS (NM_172507)	-16.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	7.9261742483122	7.99176266537565	7.56266488601534	7.68010632802952	7.36828365568189	7.21325500864595	-0.589240473464114	0.0239477686818701	0.181908061985867
Merged-chr2-168981140-4	chr2	168980645	168981645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2876.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	5.57859320361801	5.65668952299678	5.7247020021304	5.94483719516185	6.06035753651503	5.56170550834945	0.426058237395942	0.192953071201422	0.580072228792828
Merged-chr4-154019670-4	chr4	154019166	154020166	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163722)	TTS (NM_001163722)	6378.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	3.59865479096127	3.53937705042341	4.01080968761951	4.02394845163164	3.71393457503596	4.2490709195232	0.881177382664134	0.124683782728357	0.472306664538883
Merged-chr14-65150045-4	chr14	65149555	65150555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-51949.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.9849863075149	4.10393228093437	4.41444787706055	4.59480903732925	4.29153321384318	4.17142436311286	0.543868080780345	0.26879865198957	0.66596594566353
Merged-chr13-4663508-2	chr13	4663008	4664008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54344.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	3.33200813598492	3.15086151649098	3.50609578657248	3.40197112465789	3.02984657976619	3.81489856737891	0.435866421963013	0.526975803122764	0.849710825989052
Merged-chr4-142021870-4	chr4	142021369	142022369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	3971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	7.17471568236202	7.11087091483159	7.18470505315626	7.0997815491872	7.523013531733	7.33440886181287	0.268965960479161	0.280146429866146	0.677924215102583
Merged-chr9-25167609-4	chr9	25167126	25168126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15845.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.47830850082096	4.44741427936615	4.43247381380185	4.60016324834706	4.59819652001475	4.70308044839058	0.436520139900443	0.295148637939175	0.691990077927385
Merged-chr15-28024450-6	chr15	28023885	28024885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	CpG	1463.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.33806766100617	4.19611341245102	3.91113703688614	4.15656950877071	4.13961153089695	3.63100069485604	-0.455514780718116	0.418798671962131	0.788755230826602
Merged-chr6-124507568-3	chr6	124507069	124508069	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 5 of 5)	L1MB7|LINE|L1	-5052.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	3.71595041616004	3.84226850426498	3.69710941681679	4.01136945022369	3.73168940981162	4.06565743807989	0.567566508544312	0.286933075345925	0.684300670260737
Merged-chr9-57554623-2	chr9	57554123	57555123	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1871.0	NM_025837	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	3.85897132106132	4.20038374702192	4.12593167158541	4.24790715860721	4.21310115841808	4.28482684804938	0.496758733087112	0.303886608025438	0.700321189846028
Merged-chr5-147891949-4	chr5	147891427	147892427	+	801.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357002, intron 2 of 5)	(GGGTG)n|Simple_repeat|Simple_repeat	2888.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	2.68868941712212	2.7132051451178	2.90988080671625	2.76663164657412	2.68935602980085	2.86490202124895	0.0123870949097303	0.986400508333669	0.997033990984076
Merged-chr12-54862133-4	chr12	54861654	54862654	+	801.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007688, intron 1 of 3)	intron (NM_007688, intron 1 of 3)	723.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	7.22803938715096	7.62647681740592	7.34575373729163	7.57218335240686	7.71310959617446	7.13340160155445	0.133777998875628	0.625643632916354	0.892533372691366
Merged-chr11-110479650-1	chr11	110479150	110480150	+	590.0	f1_balb.idr	intron (NM_001356346, intron 1 of 11)	intron (NM_001356346, intron 1 of 11)	310.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.92673945189651	3.91670225743492	3.86386470970295	4.81768919670784	4.70672078912609	4.83211234740484	2.37201991965701	6.4941546483699e-07	3.69354490759783e-05
Merged-chr12-91778637-3	chr12	91778144	91779144	+	987.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	CpG	7792.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	6.73071727460646	6.89737938667316	6.80073153263954	6.72992238087867	6.55044515056292	6.68878264453436	-0.24848313996281	0.329840463221908	0.721504110160967
Merged-chr6-81965854-4	chr6	81965350	81966350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026490)	promoter-TSS (NM_026490)	99.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	4.39483644625734	4.63764572958992	4.33826224768951	4.34270854491172	4.41799029914951	4.26660958811211	-0.311608053082657	0.4877691466631	0.828646872242047
Merged-chr2-158178283-2	chr2	158177783	158178783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-13725.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	5.11353542818357	4.65552059903472	4.77603808589682	4.61793073032261	4.53932254274337	4.8786752859821	-0.437944341324584	0.304934079708678	0.701230797737315
Merged-chr3-142526956-3	chr3	142526434	142527434	+	724.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3402.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	3.11070745809025	3.09659454711598	2.94419901690742	3.57889340719521	3.57216344927903	3.39639884036812	1.93036678215799	0.00378798562568559	0.0499509838259978
Merged-chr8-83993221-1	chr8	83992721	83993721	+	575.0	f1_c57bl6.idr	intron (NM_008854, intron 8 of 9)	PB1D10|SINE|Alu	-4451.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	2.79878942856061	2.85830200445171	3.17672563828769	2.87176255288496	2.98469495604863	3.08245907137355	0.152245049833827	0.829069880412487	0.959955006183463
Merged-chr7-16228316-2	chr7	16227797	16228797	+	751.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4-int|LTR|ERVK	-6265.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	5.11416699766077	4.90493173990077	5.25696699799565	4.7017493283888	4.65770579535044	5.1698216971048	-0.529533332850594	0.199376232896607	0.587805905501548
Merged-chr15-25303228-4	chr15	25302700	25303700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110564.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.67624508571055	7.87053373151291	7.39483762250926	7.56842509474907	7.90741068075135	7.45195197930523	-0.0047213138485326	0.985714711849833	0.996933133810519
Merged-chr19-47865695-4	chr19	47865220	47866220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-74.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	5.8247655797775	5.88125451950538	5.98270726611548	5.86360423772234	6.09935354861565	5.99805337970969	0.178719956169236	0.549215378704222	0.860240560475278
Merged-chr9-7825055-4	chr9	7824540	7825540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007465, intron 4 of 7)	intron (NM_007465, intron 4 of 7)	11766.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	4.02843535962244	3.99091426284122	3.65744567260592	4.01698420332357	3.93185121929983	4.04613611855661	0.251911272932866	0.629947661452866	0.894467415473628
Merged-chr13-34651568-4	chr13	34651061	34652061	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1120.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	7.36472831290207	7.43602069275927	7.30295396007518	6.84748644256652	6.73960842365393	6.69653226841263	-0.921186076842478	0.000118185128718668	0.00326817819555431
Merged-chr15-100411256-2	chr15	100410745	100411745	+	994.916626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001356952, intron 2 of 15)	intron (NM_001356952, intron 2 of 15)	11810.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	2.93189916023234	2.80897240061148	3.01790829664461	3.90072970041148	4.09786878145409	3.65834949994589	5.53239952995955	3.2728774141498e-07	2.02626178479596e-05
Merged-chr1-87651623-4	chr1	87651118	87652118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	MTC|LTR|ERVL-MaLR	31306.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	7.35070137503119	7.02147040024468	7.44406450308519	7.01862553976395	7.41615714267269	7.36746630708466	0.00182967997462387	0.994528353844146	0.998946345565713
Merged-chr11-50223795-3	chr11	50223262	50224262	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1573.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	5.86923487712294	5.86706729895847	5.80731944741676	5.8570066042668	5.89419835691223	5.62529700764717	-0.0762989166686514	0.8036828969703	0.95351077179348
Merged-chr11-74992495-2	chr11	74991995	74992995	+	671.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	66623.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.40470812146493	3.85969089886666	4.23458134436699	4.34979791789324	4.52259084824734	4.51824180195845	0.735613144437911	0.133695514879354	0.488926137304149
Merged-chr9-78073550-3	chr9	78073048	78074048	+	638.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	21590.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	3.83872495352327	4.04155703661461	4.32392621102476	4.07095145009435	4.29988579614483	4.17379954017692	0.326634480823089	0.515505592082911	0.843726062787128
Merged-chr4-133615225-2	chr4	133614747	133615747	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017968, exon 3 of 8)	exon (NM_001017968, exon 3 of 8)	-13079.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	7.28288809871613	7.37590938201539	6.92407235746794	4.82884307705065	4.61937425148055	5.02693223468498	-4.57415082329696	1.19302937386267e-34	1.9853917628073e-30
Merged-chr11-99194768-3	chr11	99194225	99195225	+	861.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	36292.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	3.09906819822553	3.16730060439066	3.27416027361258	3.43004411802698	3.17444956648918	3.17172994303778	0.359832180852009	0.571606395511804	0.869547320544841
Merged-chr1-132337099-2	chr1	132336599	132337599	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	20974.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	3.01569789943233	3.38753227152236	3.24121684590101	3.38354888108353	3.09703329071677	3.36928689420915	0.243745070139195	0.711039217592613	0.924558647751225
Merged-chr1-58721540-2	chr1	58721040	58722040	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	8254.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.55992840278105	7.56521319899642	7.07434919517431	7.40963866181264	7.47197191019232	7.06291837167665	-0.13830694909611	0.61156245363807	0.886146894079858
Merged-chr19-43884832-2	chr19	43884332	43885332	+	708.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-5064.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.24772352710195	4.97405838502003	4.75423391974711	4.92850391281319	4.81836881173119	4.4100949585573	-0.592017317867747	0.176789317355755	0.557355568466549
Merged-chr11-115199352-2	chr11	115198866	115199866	+	1000.0	f0_c57.idr|f1_balb.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11879.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.15985919150472	6.23034556881135	6.53895113109287	7.32174636948217	7.71779965497941	7.25197537552595	1.77075538209379	2.13041913439626e-10	2.63399577020571e-08
Merged-chr9-114898930-3	chr9	114898440	114899440	+	680.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175380)	TTS (NM_175380)	35047.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	2.79987647790554	2.86442880414108	2.7922292791997	3.12457865592946	3.2493339522121	3.23158913216317	1.82916961455628	0.00928838281410164	0.0955927961899529
Merged-chr7-4654659-6	chr7	4654148	4655148	+	929.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4302.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	7.26681981170798	7.20345097852241	7.0306075015384	7.55763229582528	7.77022146969911	7.51251892500654	0.658344249472989	0.00575968469756323	0.0676941573824748
Merged-chr15-38289153-4	chr15	38288656	38289656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	10744.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	6.6122918555083	6.49693910676183	6.77442534761454	6.73276019318119	6.95192534886307	6.87652433760569	0.367110707456058	0.158085176907271	0.529717759346818
Merged-chr17-28515980-3	chr17	28515449	28516449	+	878.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	4.14651574671678	3.86339691402836	4.2757060733059	3.7515463772523	3.54985425232642	4.34182144912729	-0.535782055894866	0.363846736811414	0.74933829766087
Merged-chr1-13454755-4	chr1	13454264	13455264	+	925.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80681.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.77652916632276	2.56260869334252	2.86476389254129	2.56729549804243	2.45232756536742	3.04867570433032	-0.131203653347391	0.873356150359031	0.97040331531529
Merged-chr5-117158785-4	chr5	117158286	117159286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	25198.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	7.22288915382517	7.0733373328241	7.00962416367689	7.17980644588976	7.47494209748765	7.10789358235212	0.246874622481021	0.328718380389824	0.720905796252831
Merged-chr19-5926170-2	chr19	5925670	5926670	+	764.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1354.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	4.19127040200054	3.87112815792754	4.29473191456754	4.36582601211505	3.96973124971807	4.52271750124546	0.471000325546503	0.361727765134625	0.747458707295016
Merged-chr9-5357047-3	chr9	5356560	5357560	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009808, intron 8 of 10)	intron (NM_009808, intron 8 of 10)	11584.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	2.55194871364553	2.67047703335756	2.55347021416375	2.70489637145178	2.56283674180264	2.81256770325155	0.542857500452142	0.478087005307586	1
Merged-chr1-93069502-4	chr1	93068977	93069977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	13003.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	7.29201708969617	6.98865962420154	7.074720299085	7.01408470943117	6.83144728027077	7.0009283346061	-0.27382306452822	0.276738447246673	0.674062363556789
Merged-chr5-139406237-4	chr5	139405735	139406735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-152.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	7.92455752544743	8.08426167451604	7.87048103256848	7.95517991883972	8.12624307341855	7.62193978567825	-0.0547790435428025	0.821487221118157	0.958023303204974
Merged-chr8-71313270-2	chr8	71312824	71313824	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	PB1D7|SINE|Alu	40610.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	3.26138810335379	3.26853775423873	3.10870315103995	3.72626325934142	3.49354739441066	3.54091574007131	1.42852979576973	0.0217017758765466	0.170494882391814
Merged-chr17-74434769-4	chr17	74434246	74435246	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 7 of 8)	intron (NM_001033367, intron 7 of 8)	24362.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	4.51134207352242	4.22882870538659	4.42613471515432	4.43184383773894	4.35786276265231	4.45063212302892	0.0476488204931708	0.914447944662859	0.980912729144991
Merged-chr11-101425038-4	chr11	101424536	101425536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-49.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	6.70888453944157	6.84016665883795	6.7753940668464	6.66795267816738	6.73826458745951	6.96146233669562	0.018728937306639	0.941826872829616	0.987058762320129
Merged-chr2-27728702-2	chr2	27728202	27729202	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	18119.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.38611047997493	7.63693435882911	7.58926397380101	7.36821021305675	7.38713408674775	7.34046877607552	-0.256020081582009	0.265633114250137	0.663375523311218
Merged-chr15-27926052-4	chr15	27925537	27926537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99811.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	7.7816546748315	8.10257685626286	7.31922974027632	7.61997613168017	7.72607289320049	7.20012464181768	-0.34757273905455	0.243728528114001	0.64086208327192
Merged-chr7-35554094-2	chr7	35553594	35554594	+	685.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_033080, intron 1 of 2)	B1_Mus2|SINE|Alu	1834.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	3.42594569085633	3.61095520188919	3.60063341176694	3.45682513109992	3.3496929480329	3.566250228995	-0.343178998886737	0.554154550770413	0.862650023515518
Merged-chr4-75275942-4	chr4	75275448	75276448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	2344.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.14318564469592	4.8088886398785	4.60210058413368	4.60256856057646	4.30096985297169	4.81691479828945	0.0798157259969739	0.87108901594502	0.970222087171093
Merged-chr2-117303581-4	chr2	117303045	117304045	+	841.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	39332.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.88967850808036	5.46771003771119	5.70311246432897	6.11865558731826	6.15431418716653	6.64925646845413	1.07628124882605	0.00144960130337243	0.0241236850502027
Merged-chr19-25006877-4	chr19	25006388	25007388	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	7359.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.94736839203151	4.24777851698948	3.83884349603832	4.19772765507278	4.07510193386784	3.91076090199266	0.110097827513522	0.831520852058646	0.960464332375456
Merged-chr1-172474549-3	chr1	172474033	172475033	+	665.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-827.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	4.49108064097285	4.11299789402375	4.423055674028	4.28962165378961	4.93316388425184	4.9428644808417	0.985351192441246	0.0421338202966785	0.257020187437544
Merged-chr10-120141315-4	chr10	120140814	120141814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028679)	TTS (NM_028679)	-28349.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	4.64426432039314	5.08042763949126	5.10858877003006	5.37085643489674	5.28704877186151	5.39084969965673	0.808541253921735	0.0344027900106325	0.227153416220021
Merged-chr12-112627638-3	chr12	112627133	112628133	+	772.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7586.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	3.85187220519036	3.9996025939319	4.01246003805066	3.87094764616939	3.84623048745015	3.98608963030815	-0.175330628805988	0.727671552936275	0.930204882969987
Merged-chr14-67008747-7	chr14	67008279	67009279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009761)	promoter-TSS (NM_009761)	98.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	7.53410104267269	7.59842939758561	7.71010987237405	7.71930266858819	7.49981132794889	7.43108588512833	-0.0794717101343201	0.730937866244321	0.93121032683938
Merged-chr15-88865090-3	chr15	88864538	88865538	+	745.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145478, exon 6 of 6)	3' UTR (NM_145478, exon 6 of 6)	2844.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	4.37012982174938	4.27902171713289	3.94550248021139	3.95768274636712	3.99827239016001	4.11657926896731	-0.5651681376196	0.255479144826235	0.652603569801111
Merged-chr2-150786703-4	chr2	150786221	150787221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153781)	promoter-TSS (NM_153781)	-75.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	6.45123722123648	6.58302334168928	6.65625191131232	6.32766044480552	6.55394335027145	6.53330002543384	-0.137313630510264	0.609433984090567	0.88517286252283
Merged-chr9-109931658-4	chr9	109931159	109932159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008633)	promoter-TSS (NM_008633)	-115.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	7.39523879881197	7.59543283668916	7.45511684907898	7.73721672346015	7.47455710018123	7.39445226511731	0.0879261689122443	0.712971437482179	0.92531822516521
Merged-chr11-76483875-2	chr11	76483375	76484375	+	705.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	10620.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.07542933026528	6.26700799444619	6.66833950361386	6.21319281092078	6.52797279271082	6.4132634425342	0.0735974241185268	0.81243908763983	0.955578304935189
Merged-chr12-85489392-4	chr12	85488865	85489865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	15475.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.90566136451248	6.81654554218206	6.71436909447247	6.64335324086886	6.6527131369018	6.72550822427489	-0.231303832811252	0.357759386615273	0.744304114051348
Merged-chr11-31877786-3	chr11	31877262	31878262	+	850.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026252, intron 1 of 9)	intron (NM_026252, intron 1 of 9)	6822.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	2.81899951472158	2.8903896963323	2.97551948234346	2.91750069879542	2.63628332315365	2.86958916962381	-0.426863940721669	0.555505466336826	0.863261968529706
Merged-chr5-147894100-4	chr5	147893540	147894540	+	903.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027872, exon 2 of 6)	5' UTR (NM_027872, exon 2 of 6)	775.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	5.87842140253487	6.01961877528658	5.83809257787123	6.0983852861019	6.37370529488495	6.06927564888504	0.477667981897598	0.110841712063961	0.444841551070303
Merged-chr4-59035268-4	chr4	59034890	59035890	+	923.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	CpG	234.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	5.51269337264138	5.70215294746041	5.40496270013588	4.42240975832242	4.32169894609286	4.46617960298957	-2.60612764666095	1.3402222254037e-10	1.74978414221157e-08
Merged-chr6-136693501-1	chr6	136693001	136694001	+	847.0	f0_balb.idr	Intergenic	Intergenic	-31608.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.09046390309916	2.87093218160594	3.04391944315722	2.85324568435374	2.81698053685946	2.9399077538152	-0.667015307257222	0.337494060096976	0.727414835127997
Merged-chr4-135315442-4	chr4	135314951	135315951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	37763.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	7.23648214537575	7.11635628900987	6.93890030383654	6.78484589134902	7.10816878492847	6.95463737806527	-0.22503362809097	0.381528867528416	0.763186143455163
Merged-chr10-5807102-3	chr10	5806617	5807617	+	835.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1652.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	5.79428729991267	5.56877748910816	5.44964680674442	5.64389813558204	5.38109244031781	5.7608342281902	-0.0480410075954691	0.888153998475009	0.97401529899353
Merged-chr15-59202517-4	chr15	59202011	59203011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104437.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	6.02663927716562	5.93068762583503	5.83590331598328	5.66865139554585	5.45674778495745	5.45231709123747	-0.7430889856392	0.0185101182430637	0.153588942836941
Merged-chr1-171917678-4	chr1	171917195	171918195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030710, exon 1 of 8)	5' UTR (NM_030710, exon 1 of 8)	233.0	NM_001347186	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	6.93102417274545	6.8260221570126	6.58811431553184	6.86467338976712	6.91327113342101	6.68193654115279	0.0497183165226669	0.849943309213726	0.964751628421353
Merged-chr5-122395287-1	chr5	122394787	122395787	+	553.0	f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B4A|SINE|B4	3409.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	3.49984698341758	3.35462153019238	3.65181584492836	3.61904784316051	3.46210206599182	3.81846380160827	0.469231416097274	0.421040949138732	0.790122251976347
Merged-chr10-3972417-3	chr10	3971905	3972905	+	651.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	-670.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	2.95558623631779	3.27975753366065	3.28619406914558	3.28266225457779	3.06322024536667	3.12840811251949	-0.0877784021546397	0.894985480907028	0.975631493453583
Merged-chr6-71963825-4	chr6	71963325	71964325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009088, exon 22 of 34)	exon (NM_009088, exon 22 of 34)	54772.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	3.81847396309087	3.70119698435019	3.4986355336006	3.80409311658476	3.77497597444098	3.79209742701737	0.337603717613477	0.537168601609191	0.854311531235259
Merged-chr15-67714425-4	chr15	67713932	67714932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	487663.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.38707394286079	2.85244089748017	3.00089945689946	2.86513673956106	2.85381362085686	2.75320391174397	-1.31384465253871	0.0813723064103369	0.377351996421519
Merged-chr10-117300570-3	chr10	117300064	117301064	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7696.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.13585717137585	3.96874833231656	4.18829778227947	4.38428712016238	4.03566835928391	3.96450559012903	0.133892447088051	0.788515566780139	0.94895503373255
Merged-chr11-116666787-4	chr11	116666306	116667306	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163318, intron 4 of 4)	intron (NM_001163318, intron 4 of 4)	-4854.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	3.70993382241971	3.8196483050044	3.76108145315205	3.44067859116311	3.72697990871949	3.8301704547553	-0.301771928662438	0.587560904493509	0.876003722291631
Merged-chr5-67262207-1	chr5	67261707	67262707	+	781.0	f1_balb.idr	intron (NM_001285452, intron 1 of 6)	B3A|SINE|B2	1642.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	3.61016135672033	3.86790925045058	3.43256941128701	3.48004968292345	3.7527970016873	3.72729502465655	0.0100971807232585	0.986305670360205	0.997033990984076
Merged-chr11-50213185-4	chr11	50212683	50213683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2363.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	8.41482691310459	8.43470181581677	7.8490237120582	7.51949121624564	7.75319418524512	7.35692474844988	-1.00568733115508	0.00017793490453159	0.00454997158459268
Merged-chr9-100435396-4	chr9	100434942	100435942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51031.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.11728446302174	6.27847268251712	6.109346667525	6.05565318847438	6.08735902090265	5.80702122547801	-0.298704551609656	0.311936763619748	0.706795039274351
Merged-chr11-90241192-4	chr11	90240678	90241678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67B|LTR|ERV1	-8298.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.94368053313529	7.00789372995888	7.02126721959805	6.53961367764142	6.58025740651634	7.02821181699064	-0.412862547948026	0.129142348423713	0.480618862493977
Merged-chr1-195018358-3	chr1	195017847	195018847	+	964.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015566, intron 1 of 7)	intron (NR_015566, intron 1 of 7)	948.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	2.80775473920245	2.9599055029858	3.02092734969241	2.72411665987031	2.59162751967477	2.92009472349651	-0.956324780102367	0.198838127828753	0.587343866831168
Merged-chr16-8470256-2	chr16	8469756	8470756	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-557.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	3.70365200721692	3.76728765349106	3.82277595763751	3.61679071129071	3.63799477624013	3.46363921706571	-0.622160624987689	0.260967156479685	0.658521360261207
Merged-chr1-44119699-8	chr1	44119192	44120192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	164.0	NM_001357048	246229.0	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	6.46167042724567	6.18261843319875	6.52206561332895	6.33806080772499	6.4537975450866	6.34559027903714	-0.0106986077517894	0.969557799425681	0.993179349427077
Merged-chr8-125514207-1	chr8	125513707	125514707	+	554.0	f0_c57.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-21374.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.18852647143012	4.08739272019505	4.15781717238991	4.46012371197635	4.32869539564437	4.40671591317951	0.683085115598447	0.131781919479864	0.48542121200015
Merged-chr1-92640644-4	chr1	92640155	92641155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1293.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	6.53949842772959	6.50459258115405	6.29694024959075	6.78469854675872	6.73730983728415	6.47609067078236	0.353036560206635	0.194882503401417	0.582568110042216
Merged-chr1-74284892-4	chr1	74284376	74285376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	-138.0	NM_146110	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	6.76058358044107	6.5787494401908	6.54187401621644	6.75293649356943	6.74021950298266	6.47286239974823	0.0554920355130657	0.835407766571603	0.961706261746066
Merged-chr19-46762318-2	chr19	46761818	46762818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_033569, exon 1 of 8)	exon (NM_033569, exon 1 of 8)	709.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	5.07059342666859	4.79484994841711	4.78840852235731	4.7138388426333	4.59832609862623	4.73715476165452	-0.497399151549709	0.216325638980503	0.609736247697899
Merged-chr16-33685457-3	chr16	33684972	33685972	+	847.3999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	1006.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	6.43335740334068	6.41012981770131	6.48842207433306	6.7198115523923	6.7000764408821	6.56537519662817	0.363529001835841	0.159702706198116	0.532009879787526
Merged-chr9-47621806-3	chr9	47621258	47622258	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	91406.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.85368098298434	7.0168706044145	6.72408079210489	7.16266123658301	7.3195335991458	7.03649312378481	0.466461415930299	0.0663604625854326	0.336444148842839
Merged-chr10-127618593-7	chr10	127618071	127619071	+	928.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	2577.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.87321176898888	6.94416732047261	7.36139650870051	7.14327179472701	7.11208612600633	7.11557868720885	0.0846311715900595	0.747370046129612	0.936600911319824
Merged-chr6-87207853-4	chr6	87207374	87208374	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	103128.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	4.06105370405875	4.08148321478225	4.20008051604707	4.6704634431219	4.55469618931823	4.0143323226973	0.907580601387125	0.0675903956807756	0.340069031551939
Merged-chr10-88332974-2	chr10	88332474	88333474	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	MT2B|LTR|ERVL	24101.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.74715329695319	6.51009332686604	6.72027522259031	6.93222649461905	7.20231593409475	6.68094808784031	0.477456948073778	0.0859088780698458	0.388196028555869
Merged-chr10-117862090-2	chr10	117861577	117862577	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16103.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.10390870868761	3.02602651760875	3.15373632621468	3.18429793077475	3.26427501523724	3.10785497856	0.430686757905505	0.502263617988726	0.836399045882401
Merged-chr3-95672987-2	chr3	95672487	95673487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14266.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.83086417055468	6.64836949765776	6.82607214725608	6.96463638054578	7.26182083948097	6.95666382479044	0.474999112258175	0.0656451039425967	0.33426337487642
Merged-chr5-135611116-4	chr5	135610621	135611621	+	813.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21533.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	4.74178628008943	4.65953759227596	4.76082554436231	4.69717498691828	4.44783091517908	4.41145562580578	-0.462861243238063	0.27022867164535	0.66721624066072
Merged-chr4-19873765-4	chr4	19873301	19874301	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48765.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	7.27432450688422	7.54113503340129	7.10038273783878	7.01696226859678	7.17735351933181	6.72602286256295	-0.491196460242162	0.0723725397227294	0.353325395890837
Merged-chr8-70546619-4	chr8	70546192	70547192	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7017.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.85278987626408	6.19988657417231	5.17523735006212	4.91708805688926	4.77078132711262	5.09432946813114	-1.7602846264534	2.59648781689681e-05	0.000911982094843182
Merged-chr11-9530634-3	chr11	9530121	9531121	+	753.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	CT-rich|Low_complexity|Low_complexity	338679.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.54688208261954	4.19848680582359	4.50836714228634	4.48963184539024	4.75737495661056	5.07247914900458	0.873295755492511	0.0558620755204441	0.30432055628291
Merged-chr13-60719948-3	chr13	60719442	60720442	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 8 of 26)	intron (NM_134062, intron 8 of 26)	66422.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.7661709427803	3.76808917164766	4.63551043710791	3.43140862561246	3.41916958136334	3.7924057492895	-1.78230407955827	0.0055006318818725	0.0655444046436843
Merged-chr10-127059966-8	chr10	127059425	127060425	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033262, exon 1 of 4)	5' UTR (NM_001033262, exon 1 of 4)	259.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	2.8272356526716	2.71896950095444	2.90799076008787	2.83969477035572	2.45956055364594	2.46768138483296	-1.17931189590967	0.153471891037898	0.52244360796471
Merged-chr11-100357381-2	chr11	100356881	100357881	+	710.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1240.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	3.17001221883153	2.9759559471802	3.09568478673256	2.84184988207604	2.47733993385863	2.99423611630151	-1.47422285510797	0.0773382607923021	0.366801299817936
Merged-chr15-100125597-3	chr15	100125093	100126093	+	940.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-28803.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.03255920200424	4.60275006585053	4.71535919201105	4.61810466122856	4.48795816909173	4.53387168252069	-0.602365070333056	0.157784215404349	0.529315325672301
Merged-chr12-3856230-4	chr12	3855724	3856724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6020.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	7.4110430544097	7.62355124317569	7.64287681531338	7.68152751898762	7.79576705142389	7.20441328584575	0.0498228858990745	0.849677890177184	0.964686793473289
Merged-chr15-102243986-4	chr15	102243473	102244473	+	882.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2527.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	4.198945373238	4.26577452107521	5.01628979671882	4.68586109399093	4.44070824501012	4.71330114043507	0.182189021825961	0.717369839458321	0.927076744255772
Merged-chr3-65665778-4	chr3	65665283	65666283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166659)	promoter-TSS (NM_001166659)	-445.0	NM_001037923	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	7.80647248613665	8.11905094971126	7.41948848734675	7.69038813663831	7.7893935487336	6.9082949617172	-0.417675946440743	0.2033114121525	0.593172307784548
Merged-chr19-29468842-4	chr19	29468355	29469355	+	976.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	53132.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.99941010072256	6.93263743361161	6.68719954005076	7.15831514626632	7.06467366984553	6.69528557202151	0.16743139865984	0.53806991963957	0.854955846037171
Merged-chr13-41359021-4	chr13	41358521	41359521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-20.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.21236623703441	6.2211720593267	6.10353292173462	5.98723372860461	6.07741870706802	5.49557084968389	-0.494282687138903	0.128104157432925	0.478746495920899
Merged-chr11-74839819-2	chr11	74839319	74840319	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8895.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.51232719681249	7.04107720627644	6.72493974916144	7.18546308464527	7.04507322132184	6.62498744732345	-0.247399311916194	0.438522387704531	0.800615097962194
Merged-chr4-155703631-2	chr4	155703131	155704131	+	778.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1184.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	4.4757650189956	4.45917152155125	4.47111412387914	4.4738918566325	4.44314957941262	4.49577725434116	0.00133239840393311	0.997492224032887	0.999496959972402
Merged-chr1-24468601-4	chr1	24468090	24469090	+	741.924988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	118847.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	4.38484005296162	4.445719901849	4.60270717986435	4.79005058398775	4.55038144043907	4.89047719458039	0.646406546015511	0.128750856806339	0.479799601167289
Merged-chr13-91807549-6	chr13	91807027	91808027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145453, intron 1 of 5)	CpG	169.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	8.68395344578448	9.00000524555403	8.37613452744551	8.6093616629007	8.63824063960473	8.54001579810051	-0.167487875780104	0.485861358287883	0.827573679263522
Merged-chr2-91068932-2	chr2	91068432	91069432	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290765, intron 1 of 9)	intron (NM_001290765, intron 1 of 9)	1383.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	3.46629862406458	3.42696296035265	3.52449073103523	3.30061555074586	3.20593376758919	3.48947544762776	-0.551796598292711	0.358378896140307	0.744662462836062
Merged-chr9-98563658-4	chr9	98563164	98564164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015827)	promoter-TSS (NM_015827)	-53.0	NR_029444	75881.0	Mm.483402	NM_175227	ENSMUSG00000051074	4930579K19Rik	-	RIKEN cDNA 4930579K19 gene	ncRNA	7.20725530387046	7.75067733066661	7.2799932973261	7.1908034654606	7.17853594210365	7.06243828756463	-0.4388666500241	0.101594612641449	0.42520419137215
Merged-chr11-121803422-2	chr11	121802922	121803922	+	627.799988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26796.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	7.61288245303877	7.81688151787514	7.84486125716675	7.62316847287336	7.84421291273646	7.61476343484128	-0.0808027157132351	0.724988138391861	0.929475409375828
Merged-chr9-85586646-2	chr9	85586146	85587146	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	162688.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.14910287722082	4.35721601272346	4.57248129578272	4.19930155369807	4.35997318116919	4.3106897825419	-0.180106588306663	0.698742917653051	0.920452394037037
Merged-chr7-130671482-3	chr7	130670987	130671987	+	862.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-21069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	2.80483645122957	2.62886060230548	3.0174462785267	3.02434731330913	2.73577586461101	2.79014193746613	0.170273174565873	0.819759246672826	0.957288083214325
Merged-chr4-129377802-3	chr4	129377329	129378329	+	901.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028603, exon 1 of 5)	5' UTR (NM_028603, exon 1 of 5)	199.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	5.28186914979708	5.19636341400867	5.13560472114409	5.21952011962616	5.0369801000895	5.29679139072204	-0.0621509808096929	0.86196860503514	0.967996224966109
Merged-chr18-83984196-4	chr18	83983688	83984688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	102374.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.49360210180662	4.57231027279493	4.74974464076275	5.44177208134415	5.69481575981863	5.4643145026878	2.02012848930112	8.9228824662433e-08	6.44492364801365e-06
Merged-chr13-74026484-4	chr13	74025961	74026961	+	866.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	17042.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	2.91942716794955	2.86714119517637	3.05809116219137	2.71362643662302	2.72868394956997	2.64404358010813	-1.29601189066677	0.0809685462828603	0.376549943052071
Merged-chr5-108670098-2	chr5	108669598	108670598	+	830.666626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	4698.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	7.13698024799321	7.34069005035198	6.74949490156577	7.03626260572348	6.94105274003363	6.54160313199305	-0.369943184802462	0.210329614985447	0.602406257872405
Merged-chr7-125603971-1	chr7	125603471	125604471	+	589.0	f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	542.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.67885551850937	3.71648479179128	3.96263562331586	4.55955737353273	4.66302161778001	4.28026268633356	2.14989309780202	2.09611906368969e-05	0.00075865104415612
Merged-chr7-128138562-3	chr7	128138065	128139065	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 14 of 29)	MTEa|LTR|ERVL-MaLR	8997.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	2.8061753339567	2.93455424358733	2.75172315070927	2.89378260772658	2.91779541147793	2.94983199088915	0.40590519663151	0.563850527411072	0.865992481769395
Merged-chr11-6444215-2	chr11	6443709	6444709	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_029938, intron 1 of 4)	CpG	234.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	7.05295002189017	7.07706727169351	6.72807404842328	6.9908831759311	7.03797595932608	6.7706720076313	-0.039907283760782	0.878792605049996	0.972000507462599
Merged-chr7-99531958-7	chr7	99531402	99532402	+	871.609497	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3584.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	5.28469538332127	5.46709655336035	5.42132204151478	5.17858469016564	5.35332100258137	5.54011444340252	-0.0657865392046194	0.849814433350441	0.964746847431705
Merged-chr2-66192568-3	chr2	66192030	66193030	+	836.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64087.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	5.85268574066926	5.83966842754252	5.51524661379324	5.45789236885828	5.78268127862015	4.87886419633241	-0.568310371136174	0.169748229969822	0.546846133197718
Merged-chr3-9250345-2	chr3	9249845	9250845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-222.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	6.7985793253781	6.21767746597769	5.47453120095219	5.93424964243958	5.20552427362069	5.08514677169623	-1.40295650881941	0.0837402378114828	0.382962836103928
Merged-chr7-12978189-4	chr7	12977690	12978690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001168561, exon 1 of 5)	5' UTR (NM_001168561, exon 1 of 5)	342.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	7.32929505291021	7.57435078571017	7.44539660790683	7.74557924621775	8.10926101406769	7.79422518546085	0.642795515957471	0.00761993633258512	0.0830982519478037
Merged-chr15-90305178-4	chr15	90304672	90305672	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48538.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	3.69839398471963	3.90123552076057	3.85587465308725	3.65290084497716	3.62405770165303	3.92439262090665	-0.290663471763511	0.590687369162418	0.877301111216348
Merged-chr15-27726518-1	chr15	27726018	27727018	+	587.5	f0_balb.idr	Intergenic	Intergenic	-44976.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.59781175092247	3.90045869348289	3.97427460503094	3.41943565527117	3.32867902669415	3.55081369180109	-1.43304935950226	0.014674517313582	0.130592217821234
Merged-chr9-61054649-4	chr9	61054165	61055165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37596.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.90705701224224	3.83847237712064	4.08737487384033	4.12035062470563	4.31331024847983	4.33236205306321	0.918865315404849	0.0586094911663077	0.313095694720476
Merged-chr1-93801990-4	chr1	93801510	93802510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023136)	promoter-TSS (NM_023136)	-76.0	NM_001105667	21915.0	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	6.81835576821877	7.24600821497192	7.22299614396472	6.84520306190473	7.14920127094786	7.22323186375105	-0.0407041171083482	0.88151700365341	0.972787143481999
Merged-chr6-72900510-2	chr6	72900010	72901010	+	991.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019715)	promoter-TSS (NM_019715)	-531.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	6.65716972294221	6.5695057844189	6.68834884668892	6.90070242507258	6.37630125394999	6.3951915662078	-0.0848669390829819	0.771189322402304	0.943589735529798
Merged-chr12-32656267-4	chr12	32655765	32656765	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-164070.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.04982222866078	4.20431999066779	3.78410571806448	3.67971681730556	3.48137772311801	3.69196883956309	-1.3700214633721	0.0133427023871164	0.122825487357803
Merged-chr11-110986281-4	chr11	110985775	110986775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	-11212.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	6.91770404667004	6.77592890695103	6.3382588178644	6.85023367950408	7.03100955030565	6.9448736378545	0.359422649505422	0.203187108384434	0.593047970473348
Merged-chr14-13994609-2	chr14	13994119	13995119	+	749.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-17872.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	2.69205060804573	2.74586965003725	2.79345980075179	2.72323019758736	2.7693993323263	2.92454907953892	0.324751516580027	0.651938864660042	0.902896807825606
Merged-chr11-76900215-4	chr11	76899692	76900692	+	906.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4353.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	3.98920251457453	4.05431193322697	4.33755793469912	4.21187160997488	4.09079940069922	4.18793520841899	0.102315114681427	0.83200858478074	0.960550696133584
Merged-chr8-119816592-2	chr8	119816092	119817092	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	23987.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.53074514377949	3.58663801674887	4.30229072316628	3.7133614504692	3.53281620321878	3.86350825673722	-0.45294656739856	0.463277214046434	0.815758448709471
Merged-chr10-86296269-4	chr10	86295618	86296618	+	941.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164495, intron 6 of 6)	intron (NM_001164495, intron 6 of 6)	-4294.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	3.28782536622915	3.10482847229774	3.53849761777916	3.82356216295682	3.66704632580921	3.5003231614027	1.34255053027147	0.0310280291309677	0.213194074973539
Merged-chr8-70806716-4	chr8	70806221	70807221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1728.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	5.84876815965854	5.95852057967064	6.13730429965882	5.8566792015268	6.04430142650699	6.15647103682995	0.0736407187465419	0.807777657398251	0.954568947211821
Merged-chr12-32135212-4	chr12	32134706	32135706	+	846.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73132.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.82734762484317	4.89279067522751	4.82451925550207	5.0371403581162	5.07722309154641	5.16941443833481	0.52619775866021	0.156847784668134	0.52773920204877
Merged-chr8-36532881-4	chr8	36532336	36533336	+	926.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43645.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	3.62008917193746	3.38622958296162	3.4806895105939	3.16643139636926	3.0238994702511	3.3892963624024	-1.25209780920718	0.0513764523401544	0.288991167538118
Merged-chr7-126884872-4	chr7	126884362	126885362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	105.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	5.03762487449475	5.33246110165767	5.20089654225742	5.42315472334565	5.10016568542834	5.41861142112781	0.234787258183761	0.522266420829202	0.847506520484364
Merged-chr2-165987141-1	chr2	165986641	165987641	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-5496.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.58687982556723	6.09840655083825	6.46994620773194	6.99005206957701	6.92810435744586	7.06827379197436	0.936021701981348	0.000831008019859734	0.0155976569319732
Merged-chr10-21622272-4	chr10	21621772	21622772	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	29127.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	6.7334590644922	6.9770422536787	6.52094447479696	7.11441980819048	7.08285433772656	6.46408574801851	0.255644365837805	0.406080237996573	0.780529555167911
Merged-chr6-99388843-4	chr6	99388358	99389358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	46487.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.19043054588813	3.0542975742612	3.15058471834748	2.95711264117092	3.06254278745054	2.98527105421808	-0.572144066210549	0.388338315343003	0.768214408180843
Merged-chr11-75453780-2	chr11	75453280	75454280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	937.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	5.10946667812923	5.13353967909857	5.22496162447628	4.99321197359083	4.88678019906301	4.75179160541003	-0.572098366207472	0.126267475106286	0.47516910445678
Merged-chr10-91141740-4	chr10	91141253	91142253	+	976.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17790.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	4.62500540296359	4.75660758970207	4.76828602487391	4.51202968207738	4.40318266042531	4.72149142494651	-0.42270788486382	0.313107868520792	0.707746598467115
Merged-chr5-8895570-2	chr5	8895070	8896070	+	843.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1849.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	3.50909014997789	3.26497747155877	3.29614463801299	3.41493353683218	3.38617966969675	3.48063352220852	0.232945246142833	0.698007375341584	0.920163464050802
Merged-chr19-5493338-2	chr19	5492838	5493838	+	889.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 3 of 3)	intron (NM_007687, intron 3 of 3)	2883.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	2.99279986908955	3.11018877603329	3.28644754251578	3.06337674354478	2.80298978450276	2.95813684859768	-0.868182784191804	0.210729256842881	0.603011211341303
Merged-chr12-117479185-4	chr12	117478680	117479680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37299.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.93874123369486	5.61663893193707	5.77895060800877	5.81462920024862	5.93509144983872	6.11569457189262	0.301745770339286	0.338054226217963	0.728000347830431
Merged-chr11-117331750-4	chr11	117331235	117332235	+	714.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	20.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.70239578334837	4.72865752220206	5.13080601967205	4.75320426071349	4.54916432319177	4.97497901888506	-0.228304083787349	0.593061173011534	0.878398361724896
Merged-chr2-120137188-2	chr2	120136688	120137688	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	ID_B1|SINE|B4	17387.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	7.4768431343096	7.41973163776522	7.30734665304582	7.55620478235946	7.60268510002952	7.1689854116651	0.0883168264097743	0.721539878931646	0.928503945058713
Merged-chr8-71381514-4	chr8	71381033	71382033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010150, exon 1 of 4)	5' UTR (NM_010150, exon 1 of 4)	419.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	7.6309331361603	7.48818805478752	7.54084323716809	7.47142280803266	7.22101028326319	7.47913566205477	-0.242138411773375	0.299111304438839	0.695927450710144
Merged-chr4-128712263-2	chr4	128711776	128712776	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001195130, exon 7 of 15)	exon (NM_001195130, exon 7 of 15)	-15295.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.41565848145259	3.05261010155534	3.39017167153422	3.61216141355547	3.20865221613378	3.10920190186433	0.148850002098342	0.82736599640448	0.959445425237295
Merged-chr4-109418325-4	chr4	109417827	109418827	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	2680.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	4.15364729317229	4.01022730197735	3.99932259390559	3.86565320662444	3.70518611107729	4.1144238596405	-0.49749843217823	0.33576079887712	0.725879995869482
Merged-chr6-98992781-2	chr6	98992281	98993281	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	35517.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.09315649319392	3.6520617677823	3.44077246977484	3.78759468741197	3.40588108248926	3.5749403418355	-0.553231404117747	0.37401764435228	0.757718602868082
Merged-chr5-125406657-4	chr5	125406157	125407157	+	977.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16640.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	6.02703701037226	5.97683356077383	6.11427746006244	6.22033517374283	6.29608747007209	6.46296457423657	0.487545408877041	0.0847133040621666	0.385434416251354
Merged-chr2-152738005-7	chr2	152737568	152738568	+	972.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010495)	TTS (NM_010495)	1817.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.30231314703181	6.16953356235692	5.90031430264117	6.11743926204989	6.06529580312979	6.19144686192481	-0.0414864990325283	0.888597021283985	0.974077866731537
Merged-chr7-75609903-7	chr7	75609392	75610392	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	154358.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.82918761541382	5.91559697837725	5.74574692713916	4.25669229380491	3.95879850474633	4.3596546937515	-4.02759869953472	5.46693370131482e-18	2.66019075683628e-15
Merged-chr1-74379528-10	chr1	74379148	74380148	+	897.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	4445.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	6.01519400678357	5.85839717873964	6.38350192614223	6.57524110023475	6.4502367549578	6.77797161203308	0.841228495256944	0.00563493175324388	0.0666483868264274
Merged-chr16-17694957-4	chr16	17694434	17695434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	27966.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	7.02323678749988	7.12229204463293	6.57202144739325	7.22605507606145	7.17504938803957	6.27554575801486	0.0569223401119391	0.871041454851898	0.970222087171093
Merged-chr12-79321096-4	chr12	79320597	79321597	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 5 of 10)	B4A|SINE|B4	23746.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.96219719476438	3.33276174856035	3.60069205400833	4.01035028314658	3.76457226663072	3.61667149958231	0.470500691224636	0.445279240602673	0.805077450340689
Merged-chr1-64318613-4	chr1	64318109	64319109	+	844.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-197220.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.26806944203929	5.30047886907301	5.1156833708755	4.79820217875529	4.78857547212557	4.64034095861642	-1.04996820812858	0.00574748628945077	0.0675857601996353
Merged-chr8-106412401-4	chr8	106411887	106412887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2952.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	7.40937253258881	7.06589736593416	7.12998054742974	7.43312034928959	7.55267004025875	6.95231595975153	0.201167183354433	0.470042704171582	0.819264793771069
Merged-chr5-136988583-4	chr5	136988101	136989101	+	900.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-642.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	4.95587643509166	4.6696265915491	4.80931023954177	4.57921512807408	4.32822303687153	4.83806628676384	-0.548066525058757	0.207530164137507	0.598321953416504
Merged-chr2-68381333-4	chr2	68380834	68381834	+	933.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	90647.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.17517606068621	4.09376725339252	4.20764469618411	4.01301851346537	3.99737316290551	4.35834006034309	-0.0987512312092313	0.839032894559813	0.962689590327261
Merged-chr17-83514457-7	chr17	83513944	83514944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159529)	promoter-TSS (NM_001159529)	-111.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	8.04851316322138	8.4291140556761	7.97183560706449	8.14118069233245	8.40554417750012	7.9326566978013	0.0140996537531443	0.955971816693755	0.989807313282509
Merged-chr18-64963909-2	chr18	64963401	64964401	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-59626.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.98116426205535	1.9180254166832	2.0318570073702	2.16032094643349	1.95762558056997	2.24042486818568	1.12960704315401	0.229530429156541	1
Merged-chr18-31636909-2	chr18	31636409	31637409	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172965, intron 2 of 20)	intron (NM_172965, intron 2 of 20)	1781.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	2.96939383008365	2.74130746591325	3.0278664484788	2.63219759869715	2.85022988390685	2.86670690455604	-0.636944845217336	0.389191902535431	0.769015431167891
Merged-chr7-84188402-4	chr7	84187912	84188912	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36519.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.25655000941779	3.40276260101259	3.20623488879395	3.75414491976486	3.43961914155844	3.5705511508428	1.11429181497245	0.0688842527777541	0.343443040633433
Merged-chr7-114302916-4	chr7	114302409	114303409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26793.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	3.91661793517415	4.20300508977528	3.92582844405734	3.49713075372179	3.3856908444161	3.89814366266001	-1.40570925398715	0.0159167962651061	0.138536065232944
Merged-chr2-32711384-2	chr2	32710839	32711839	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 2 of 6)	B1_Mur4|SINE|Alu	1445.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	4.29492870075202	4.86594524024815	4.99760774169949	4.50754720007588	4.44831018636944	4.6381519485158	-0.521650334382978	0.261367949441081	0.659047375286932
Merged-chr3-19954157-4	chr3	19953670	19954670	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2884.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	3.85693644336136	3.6613391953118	3.81654869381176	4.16530653865922	3.7204168382016	3.93730264170573	0.536067956495724	0.319720381821501	0.713651544620236
Merged-chr11-119084803-3	chr11	119084344	119085344	+	927.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007625, intron 2 of 4)	intron (NM_007625, intron 2 of 4)	1393.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	6.85376028843739	6.5958965784948	6.62930678203431	6.72381103853696	6.71609163572052	6.62074375696289	-0.0167934709876495	0.948512995541467	0.988151190239158
Merged-chr2-173062171-4	chr2	173061719	173062719	+	960.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40317.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	2.53952754037886	2.46714114695266	2.67923227844917	2.58788801562894	2.36338577540684	2.36793465070769	-0.709032609747476	0.386328580346657	1
Merged-chr2-70662369-5	chr2	70661903	70662903	+	829.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	894.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	6.46866684547424	6.6181310785028	6.23603875062717	6.36627398355087	6.35191201140718	6.142850000147	-0.266090761075463	0.351812770917562	0.739473733111637
Merged-chr19-24281486-3	chr19	24280944	24281944	+	995.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008044)	promoter-TSS (NM_008044)	-858.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.87078871195952	2.72919012135785	3.19145976181486	2.88395448231827	2.97487147754385	2.86130443718097	-0.134858684573488	0.852746810726258	0.965544656676077
Merged-chr10-70195937-4	chr10	70195443	70196443	+	713.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-8721.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	5.89750405568348	6.07095275302813	6.34875071390946	6.2798791350234	6.36100621599473	6.10593846114419	0.257209805839512	0.393412766631423	0.771547729581095
Merged-chr7-118480486-3	chr7	118480030	118481030	+	858.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11445.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.52829117896234	5.44989641859411	5.66779700069936	5.74426737752236	5.94216032263166	5.50312682589766	0.390326249686356	0.24077440629006	0.63779309813394
Merged-chr1-183669864-4	chr1	183669376	183670376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79101.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.47324923142216	5.22596498197305	5.46672765406501	5.65484638607431	5.80792397759515	5.47024606548611	0.518135659940309	0.12592187067566	0.474643086904141
Merged-chr11-5065285-4	chr11	5064783	5065783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	44.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	4.78326157264206	4.78988281357921	5.2039179749733	5.01311744332955	4.68440694060451	5.08032272145758	-0.00248811002464721	0.995201303150205	0.998961028701257
Merged-chr11-115709389-4	chr11	115708840	115709840	+	822.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-743.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.82867732964372	6.11103217969307	5.7789419977991	6.18384798795621	6.30553500052319	5.99386128681036	0.433864663780642	0.158666852773095	0.530447689219215
Merged-chr12-101957629-1	chr12	101957129	101958129	+	667.0	f0_c57.idr	intron (NM_029705, intron 1 of 10)	intron (NM_029705, intron 1 of 10)	614.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	7.09189244597963	7.27592212435025	7.44526813181571	7.20630229213781	7.42612227137548	7.36775347863863	0.0970565631800766	0.692177477316103	0.918590542007936
Merged-chr9-90035950-2	chr9	90035450	90036450	+	705.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18317.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	2.71777142576112	2.6113778448939	2.74225923256373	2.6147684623438	2.47516284510998	2.69309728677531	-0.552521536357255	0.469414840920186	1
Merged-chr7-19750310-4	chr7	19749824	19750824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-751.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	5.76387492609528	5.44435193287529	5.85624720604006	5.75570555863157	5.98485800394823	5.8202068054146	0.309283454245948	0.342419209662083	0.731306390936577
Merged-chr17-12960634-4	chr17	12960198	12961198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009338)	promoter-TSS (NM_009338)	27.0	NM_009338	110460.0	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	6.28744644536165	6.61903022490896	6.53952841902607	6.57605065124958	6.17123947213339	6.36345352997682	-0.181619054218035	0.534701975738007	0.853068627162717
Merged-chr15-59831224-4	chr15	59830718	59831718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-36259.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.97431560536343	5.83916351099405	5.79163587811446	5.85017816240435	5.88751782870892	5.69346401040379	-0.0970815619488778	0.750339841066623	0.937550343416037
Merged-chr3-87008201-2	chr3	87007701	87008701	+	907.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D3|LTR|ERVK	-8861.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	3.81956760879492	3.82647320427285	3.53752173675564	4.26452411134216	4.01415593807792	4.31990367876107	1.37677193423484	0.0113492205782785	0.109994215414732
Merged-chr13-93191483-2	chr13	93190983	93191983	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	934.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	7.63070307657107	8.08718100250042	7.84154153999224	7.92136308801721	8.27263380561202	7.88968668716371	0.251280765668659	0.320934839645393	0.714664039040857
Merged-chr10-115816760-4	chr10	115816264	115817264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-520.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	2.97600017860976	2.71362002532109	2.86082370533117	2.8333553853699	2.69653293911418	3.05053525112643	0.0367671181451002	0.959960470864001	0.990334145750493
Merged-chr5-16465685-2	chr5	16465185	16466185	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-87810.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.33767467358419	3.06691646313552	3.3313148759819	2.98062190246534	3.23893317278812	2.99405991178671	-0.702917939936102	0.303184408175362	0.699862332768671
Merged-chr11-121701563-2	chr11	121701063	121702063	+	973.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-864.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.81979955274752	5.12371619722427	5.32733756388175	4.98197777366105	4.77929621800625	4.94330505268918	-0.427271715801399	0.282108149149221	0.679981891440236
Merged-chr12-69454661-4	chr12	69454169	69455169	+	882.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20881.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.2553645424593	3.94167901077633	3.96847373992155	3.83735811545512	3.80906200496715	3.77908133668495	-0.790676807047115	0.126603133801692	0.475549804679232
Merged-chr4-139158498-1	chr4	139157998	139158998	+	553.0	f0_balb.idr	Intergenic	Intergenic	22157.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	3.65133575487406	3.29531230676467	3.78034661906775	3.55860014673562	3.17516007360144	3.43949611246681	-0.693483120625811	0.274223947235125	0.671699134465491
Merged-chr11-80142145-4	chr11	80141618	80142618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183275)	promoter-TSS (NM_183275)	35.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	7.61358496809093	7.78557028078913	7.70374051232563	7.7557505639373	7.79741655722495	7.34359857441387	-0.0660011513009944	0.787079983075127	0.948693859994902
Merged-chr3-79586984-4	chr3	79586471	79587471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4366.0	NM_001356326	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	3.03134166038448	3.17425978403204	2.75853786660851	2.9663258865774	2.78468477941199	3.08385430008087	-0.267121091777236	0.716291500524219	0.926569584146506
Merged-chr16-50255055-2	chr16	50254555	50255555	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027444, intron 7 of 16)	intron (NM_027444, intron 7 of 16)	177334.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	2.11408470829009	2.4782954798219	2.25667073113718	2.32983961048491	2.1695957986857	2.46203605463465	0.189476193738401	0.833594418814915	1
Merged-chr11-106673661-4	chr11	106673172	106674172	+	888.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	41609.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	6.89075337523958	6.79794053319275	7.00626590565801	6.38828491662097	6.71862384834574	6.87720243970382	-0.348969340109373	0.202580038590747	0.59252027125208
Merged-chr19-11772461-2	chr19	11771961	11772961	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	Lx5c|LINE|L1	2046.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	3.82810571908893	3.80444282419859	3.76003804040373	3.88875472362312	4.00643821428291	3.83064544712326	0.367445249806112	0.474684491610025	0.821664499521211
Merged-chr8-88199254-6	chr8	88198750	88199750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	37.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	7.75501207076011	8.09317418577902	7.57051128137373	7.77670787214807	7.74368054629019	7.47138890161954	-0.224758498038671	0.379109671167371	0.761621772253655
Merged-chr11-103365614-2	chr11	103365114	103366114	+	775.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_183034, exon 12 of 12)	3' UTR (NM_183034, exon 12 of 12)	-1922.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.35438771194215	3.7204872223931	3.89240059705101	3.8141165171902	3.36460312503079	4.00560322446722	0.261199694891749	0.678000832388669	0.913302826194187
Merged-chr15-81514385-4	chr15	81513889	81514889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48073.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	4.99095886113378	4.85563523549871	5.37333788408317	5.48272310185466	5.39189390827445	5.28539262634802	0.640832508180061	0.0867570240117459	0.390230739714003
Merged-chr7-144582489-4	chr7	144581975	144582975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010175)	promoter-TSS (NM_010175)	-39.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	6.76991816575784	7.04737259894266	7.05768011994677	6.8349613603228	6.90794718624824	6.9013245913622	-0.123071645477157	0.625936347692096	0.892768520930812
Merged-chr16-44173085-4	chr16	44172594	44173594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-303.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	6.98941064312881	6.91954654245818	6.82929239595039	6.81796702249169	6.70087205915924	6.36112082793766	-0.41476292824249	0.124656767396876	0.472306664538883
Merged-chr19-3946887-2	chr19	3946387	3947387	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 9 of 10)	intron (NM_019449, intron 9 of 10)	11701.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	3.0146508759355	3.02102152746404	3.11707109299045	2.91941526213187	2.82124143236821	3.24299974208357	-0.232215356222495	0.738010394125508	0.933858424870961
Merged-chr13-117021160-2	chr13	117020660	117021660	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4356.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.86907799388206	3.48533641174634	3.62493845220829	3.65664008616943	3.59898807580756	3.79869080629279	0.0336821544589883	0.952499665891118	0.989124260059756
Merged-chr7-15946016-4	chr7	15945522	15946522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133831)	promoter-TSS (NM_133831)	86.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	7.68841521319043	8.02839756222355	8.0767554801319	7.85889344699875	7.99032520260448	7.99895085578781	0.0156337819864785	0.946258588651509	0.98796006280508
Merged-chr3-51277448-4	chr3	51276977	51277977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291063)	promoter-TSS (NM_001291063)	37.0	NM_001291063	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.74817018032226	7.91587933034075	7.8315577876738	7.694443675659	7.75030501114189	7.60558130244864	-0.209946805754803	0.336469703380214	0.726495863166849
Merged-chr5-142391085-2	chr5	142390585	142391585	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-10412.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	3.94002155179606	3.71135787861882	3.70875085747149	3.64760867772883	3.44157181207263	3.82950577671257	-0.520078435985553	0.356338006947814	0.74323101460165
Merged-chr9-22312916-2	chr9	22312416	22313416	+	582.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9A|LTR|ERVK	-5278.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	6.4769585080019	6.51175795551667	6.70144068621049	6.57012580868975	6.89514842422375	6.63147162632503	0.245362552357492	0.365446320517314	0.750612363002756
Merged-chr4-62521890-2	chr4	62521390	62522390	+	670.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1827.0	NM_008525	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	2.80841641295306	3.05348708257559	3.09421069650966	2.74582324904236	2.80661713642443	3.05330044271603	-0.572401565329076	0.426383553914615	0.793775990271191
Merged-chr9-110893724-4	chr9	110893297	110894297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153354, intron 17 of 25)	intron (NR_153354, intron 17 of 25)	13475.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	5.23607637172533	5.20538657769944	5.30485290325936	5.07351135501918	5.31740285369792	5.14193929760454	-0.114384504254583	0.747284987502491	0.936600911319824
Merged-chr14-61799464-4	chr14	61798976	61799976	+	941.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117103.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.645300600918	5.64073103384336	5.76086487407363	5.34489692645201	5.69232837280141	5.37379637957041	-0.347141705958618	0.302856221744759	0.699545120672982
Merged-chr5-8660245-8	chr5	8659729	8660729	+	797.842285	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011076, intron 3 of 29)	intron (NM_011076, intron 3 of 29)	-37277.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	3.12935938184027	3.01636803606997	3.40153649362073	3.12908973446845	3.01562396819849	3.36782068799839	-0.0555434289355366	0.933821130441707	0.985607953495783
Merged-chr19-4125850-4	chr19	4125341	4126341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	17.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	6.68846082841549	5.99532042635412	6.23240668844969	6.74625446936841	6.39567004888423	6.37440727444687	0.281964799761107	0.391053110129515	0.770112153342334
Merged-chr16-13109770-4	chr16	13109270	13110270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015769)	promoter-TSS (NM_015769)	34.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	7.01952717414006	7.44993939504904	6.74919907362409	6.8344222485229	6.92554082657104	7.01565094538886	-0.292454068936845	0.310726224288635	0.706022433069834
Merged-chr5-34658300-2	chr5	34657800	34658800	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029278, intron 1 of 17)	intron (NM_029278, intron 1 of 17)	1848.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	2.34359244920749	2.55675751962542	2.37142182983504	2.44010698747393	2.30836737996206	2.57425182800609	0.0677026285868663	0.935019926415384	1
Merged-chr11-48855628-4	chr11	48855116	48856116	+	866.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	5.48217150767283	5.67715508598848	5.49129684172678	5.4360941791915	5.62146533812072	5.33779165760308	-0.144023791466607	0.668490137936619	0.909204788456481
Merged-chr5-150593233-3	chr5	150592722	150593722	+	898.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	7.49833582167347	7.61913255003717	7.75084929004701	7.74835730534928	8.0460923374577	7.89663013491045	0.407821678178537	0.0763070615997774	0.363709703901004
Merged-chr10-26373828-2	chr10	26373328	26374328	+	904.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347467, exon 1 of 21)	5' UTR (NM_001347467, exon 1 of 21)	244.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	4.90181947242317	4.88009900316471	5.09298620413894	5.00156172767016	4.89065766953878	4.91457890448303	-0.039555408512914	0.916630004132448	0.981330246054563
Merged-chr9-65536876-2	chr9	65536376	65537376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	43211.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.28219498262542	7.18650257544293	7.40617475790844	7.35033697520418	7.47032675232273	7.31148273896568	0.139609452469262	0.549116964557983	0.860215389264136
Merged-chr11-75645446-2	chr11	75644946	75645946	+	754.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008916, exon 8 of 12)	exon (NM_008916, exon 8 of 12)	-6063.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	3.94683850251749	4.07203222061937	3.91423387242639	3.93739778266402	3.84412632002302	3.8293820366417	-0.343438484093402	0.496240181473894	0.83293489768267
Merged-chr13-37880734-1	chr13	37880234	37881234	+	681.0	f0_balb.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-7700.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.80267337839952	5.83585642843718	5.10719824193716	5.34471833400328	5.39591051473957	4.9313891757299	-0.735487854620563	0.0725194210081522	0.353758017127759
Merged-chr15-78573220-4	chr15	78572743	78573743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-460.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	7.30641898455873	7.14654564971134	6.47727273512341	7.34720353624614	7.24633982321271	6.77808237668307	0.177189053055837	0.587212304953084	0.875769926947203
Merged-chr4-126210131-4	chr4	126209643	126210643	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7433.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.08235863729791	4.00870842752852	4.15783048730276	4.90950812409548	4.65605919476378	4.2789844112643	1.48275145477954	0.00187171370341291	0.0293519701910255
Merged-chr1-85272383-1	chr1	85271883	85272883	+	630.0	f1_balb.idr	Intergenic	Intergenic	-1817.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.57780947241138	2.43614343507051	2.64554584397488	2.12520443014587	2.0508739344391	2.47446722592544	-2.05648485647215	0.253538030261418	1
Merged-chr6-149194287-2	chr6	149193787	149194787	+	649.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5575.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	5.76884513569506	5.66983469536692	5.62414660779659	5.82450825710474	6.30230845696392	6.1472268321024	0.738200298361836	0.0206095110943149	0.164595260068859
Merged-chr3-103025500-2	chr3	103025000	103026000	+	912.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	4954.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	4.02291574958439	3.85705500449254	3.79055283159557	4.2374549731562	3.94771515306349	3.96735963006727	0.475625642826552	0.353875224368673	0.741021986844889
Merged-chr5-33652481-5	chr5	33651909	33652909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356983)	TTS (NM_001356983)	165.0	NM_001289725	20492.0	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	7.57876885102552	7.781496835629	7.87364123678747	7.64745512519926	7.79669982854518	7.93001522256403	0.0675825011897725	0.770312530802586	0.943392092118189
Merged-chr14-66844795-4	chr14	66844287	66845287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	23813.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	5.05867980713353	5.05877265596098	5.33353762693624	5.06845608584831	5.25239920649242	5.17992249825809	0.0538420867280761	0.882421612405579	0.973184220613163
Merged-chr14-73122698-4	chr14	73122216	73123216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19794.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.32411957996579	7.42667038326051	7.54794608118981	7.38779496078704	7.54061087633085	7.2291617754403	-0.0468086406925547	0.844707380572904	0.96373428957366
Merged-chr15-103484321-3	chr15	103483822	103484822	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 22 of 30)	intron (NM_153505, intron 22 of 30)	-18712.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.25095808140763	3.14097820815858	3.29817307897635	3.17725097199084	3.21451274821768	3.01524034652121	-0.358863862678501	0.578529216713969	0.872437129840066
Merged-chr1-152800122-4	chr1	152799668	152800668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	15.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	7.43918275742773	7.72447271929673	7.46353599473212	7.49181275789358	7.93989213187952	7.51015355443784	0.175430936607799	0.496706455049179	0.833276379458998
Merged-chr2-92434188-4	chr2	92433683	92434683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-114.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	7.65865071884477	8.02562138196359	7.71171615539169	7.50549807934995	7.82390448822952	7.58196482972394	-0.235320339670519	0.339345609462286	0.729185999848615
Merged-chr10-67251955-2	chr10	67251455	67252455	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 24 of 25)	intron (NM_207221, intron 24 of 25)	33326.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.98923309659606	3.86690458237265	4.18071560029378	3.96650223655579	3.5689258677851	3.92875171959173	-0.575400188547366	0.287067013742732	0.684323804399215
Merged-chr12-91591513-2	chr12	91591013	91592013	+	867.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1026.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	7.43587091688421	7.67148097575793	7.30475276669753	7.34657870501108	7.64593400413693	7.27963095450045	-0.0636686088980657	0.802385840175108	0.953198534492307
Merged-chr10-88336578-4	chr10	88336074	88337074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	MER31A|LTR|ERV1	20501.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	7.35465778112449	6.92807217679915	7.49532940642249	7.57865793674643	7.72972355005306	7.44096540178214	0.467516510753324	0.0789419936249397	0.371191535123417
Merged-chr5-151344952-4	chr5	151344472	151345472	+	832.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23703.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	2.87486272707495	2.79961202467268	2.91727046238623	3.01546731447691	2.88300696184149	3.04892668889871	0.572266345571422	0.405275515877696	0.780049815379569
Merged-chr15-81400099-4	chr15	81399580	81400580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-58.0	NM_177310	321003.0	Mm.390833	NM_177310	ENSMUSG00000022401	Xpnpep3	APP3|E430012M05Rik	X-prolyl aminopeptidase 3, mitochondrial	protein-coding	7.51300614962622	7.60132673257847	7.27369886163886	7.55706901929247	7.58792797276539	7.01394907311854	-0.0769102741534773	0.777216601005842	0.945038115626604
Merged-chr19-55744162-3	chr19	55743661	55744661	+	891.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	2351.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	6.81339052474404	7.16344829023899	7.33906667136289	7.06010574485249	7.12201094595756	7.51470968523684	0.185986392898337	0.509404022544323	0.840296625810954
Merged-chr12-16866011-4	chr12	16865477	16866477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29001.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	5.76420120245049	5.70826379659541	5.83468309484858	5.9125549157116	6.00848182145244	6.03559625510573	0.390305484429847	0.189056334049662	0.574648381501527
Merged-chr1-174048430-4	chr1	174047936	174048936	+	828.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	2.90669176781872	2.76910986796834	2.85472382931292	2.97323068207107	3.04115267918674	2.98908708415055	0.769046739712846	0.264729463791119	0.662666328517541
Merged-chr14-64310063-4	chr14	64309546	64310546	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	106910.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	3.67836093097763	3.42293736340978	3.49458873721257	3.36451471600339	3.22722281629828	3.3996061907907	-0.809020324927894	0.177972297675671	0.558988334025263
Merged-chr5-113012189-1	chr5	113011689	113012689	+	603.0	f0_balb.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	3349.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	3.58427140303898	3.44470866468277	3.44007660367056	3.31160457904176	3.03864477067804	3.34401746499094	-1.05174859244706	0.0949918505442234	0.41098595570319
Merged-chr10-58529967-4	chr10	58529439	58530439	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 10 of 15)	ORR1F|LTR|ERVL-MaLR	32002.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	5.32714619348267	5.34666133921637	5.21222752996964	6.12892481323461	6.20683679738468	5.82403308648149	1.41092413456701	1.53377559426924e-05	0.000579311845882684
Merged-chr7-144932571-4	chr7	144932085	144933085	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007631, exon 5 of 5)	3' UTR (NM_007631, exon 5 of 5)	7340.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.53105719493169	5.79437357297358	5.81355114456546	5.45441495087765	5.42815025772579	5.50745554752242	-0.478232276344873	0.143280173902048	0.505345895453137
Merged-chr13-100831308-2	chr13	100830808	100831808	+	702.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	2119.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.21448040167316	4.13353818998054	4.08684237095115	4.21093782801267	4.36818098066256	4.42633626212405	0.509274511029179	0.269278036074474	0.666438561847887
Merged-chr16-4887470-2	chr16	4886970	4887970	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	PB1D10|SINE|Alu	1370.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	4.86598992693472	4.80099249417607	4.88446736027966	5.086092651228	5.07343607661814	4.94990547720168	0.424807659451452	0.255695637257757	0.65274225734197
Merged-chr14-45660289-2	chr14	45659802	45660802	+	724.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2159.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	4.3913171138761	4.92258888051755	4.63500825578971	4.64361566395045	4.5635409234075	4.81611397742714	-0.00411900329349688	0.992539481960425	0.998523796268552
Merged-chr13-96510769-4	chr13	96510294	96511294	+	945.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_144624, intron 2 of 10)	intron (NR_144624, intron 2 of 10)	8393.0	NR_144623	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	3.74727544498375	3.54838986767678	3.38624577123585	2.92086213217127	3.04267407687903	3.09759157746553	-2.42651774303812	0.000545177668662757	0.0112370873568846
Merged-chr15-81465261-2	chr15	81464761	81465761	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1055.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	4.36103777725654	4.36770815616554	4.34444454065046	4.27564234209405	4.1717339358041	4.53535329086293	-0.089057950264518	0.844784775657672	0.96373428957366
Merged-chr1-92752019-4	chr1	92751538	92752538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79607.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	4.12029908374358	3.83483700917678	3.9908375055632	3.69157312464309	3.54279968546641	3.81530025382638	-0.998802904545358	0.0638072655193254	0.3291128814246
Merged-chr2-118374025-4	chr2	118373490	118374490	+	890.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201367)	promoter-TSS (NM_201367)	-571.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	2.18508056179959	2.36500953461731	2.28805585232711	2.49573285659579	2.19845430216426	2.49373362146218	0.764962103167064	0.378640650678192	1
Merged-chr11-88044471-3	chr11	88043983	88044983	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2890.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	4.56361614908293	4.34759035010456	4.50361241591224	5.66717581791397	5.8383485055489	5.52488405095183	2.61668378386616	2.2027883640908e-11	3.36311218714252e-09
Merged-chr6-97826878-4	chr6	97826379	97827379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	19821.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.35448842884628	6.14327052190079	6.13848638672159	6.09389904925311	6.05113931009755	6.64664790406636	0.10370016791874	0.745708193349442	0.936251303305737
Merged-chr3-95494525-3	chr3	95494010	95495010	+	862.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009709, exon 20 of 21)	exon (NM_009709, exon 20 of 21)	-4700.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	4.70472877927412	4.46641010241335	4.62440887096074	4.85384259399251	4.74486420550284	4.47551634090956	0.255286891684594	0.54714063055671	0.859233322399976
Merged-chr11-115657110-4	chr11	115656595	115657595	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-28800.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.60615529307954	5.37411560153556	5.8135863690393	5.9762328709514	6.09960265433412	5.51820215518243	0.542681295685854	0.122358126793637	0.467841880996458
Merged-chr11-80149438-2	chr11	80148938	80149938	+	799.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4724.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	2.70466188883867	2.66400492482902	2.8310434913576	2.83371653610082	2.67138406307178	2.78250494026662	0.162056301335283	0.82380907388668	0.958451755471188
Merged-chr12-78916027-2	chr12	78915536	78916536	+	856.400024	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9098.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	3.23241173477306	3.04331295726394	2.9990046028217	2.59096873250091	2.43613042665191	2.95339865679894	-2.36116066890109	0.00874277958631074	0.0917604851036241
Merged-chr2-84717145-2	chr2	84716645	84717645	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	3.70320152305198	3.78124136048379	3.91053104378141	3.5312185071974	3.71309444467065	4.06809100113528	-0.0492795797764158	0.929835333844004	0.98428520397547
Merged-chr3-84037918-2	chr3	84037418	84038418	+	728.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 2 of 34)	MER20|DNA|hAT-Charlie	2243.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	3.95181094983978	3.70586815929872	3.89512031755976	4.03277402653568	4.11290008482706	4.10922361715589	0.703044084084543	0.161963927479457	0.535193761745733
Merged-chr19-29464193-3	chr19	29463685	29464685	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	B2_Mm2|SINE|B2	53266.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.42799939517564	6.42484161050669	6.26081710913311	6.36986812984882	6.49649897453977	6.25868572083561	0.0125984255998036	0.963408089062566	0.991116725160803
Merged-chr3-14533837-4	chr3	14533335	14534335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028915)	promoter-TSS (NM_028915)	47.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	5.0521923400619	5.10262459492555	5.31941594629684	4.95545863400547	4.99478127170427	5.06705535799867	-0.317948449648188	0.387185628511222	0.767462350491678
Merged-chr1-23920936-4	chr1	23920452	23921452	+	710.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357395, intron 1 of 10)	intron (NM_001357395, intron 1 of 10)	1429.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.58346403784739	3.80108620952187	3.69609937749233	4.26266092785893	4.07076198119818	4.12386303223772	1.40901524621124	0.00696387304360488	0.0778202992495668
Merged-chr10-60371745-4	chr10	60371232	60372232	+	927.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24881.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	5.2061873928174	5.34119733611039	5.47733715939538	5.37718356615937	5.12098605073257	5.10164925775871	-0.265918883084253	0.457676356458456	0.812457795920791
Merged-chr12-3496292-2	chr12	3495792	3496792	+	842.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172421, exon 10 of 11)	exon (NM_172421, exon 10 of 11)	69435.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	3.58571796255216	3.54757317521099	3.465409750427	3.64829358365797	3.71119987368069	3.70056687654293	0.523116476794248	0.343907571650555	0.732645864957409
Merged-chr1-88227292-4	chr1	88226742	88227742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 1 of 41)	intron (NM_001281466, intron 1 of 41)	222.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	6.00816057497543	6.0448393735827	6.3880395552162	6.43128638177704	6.06209407812769	6.67471513232808	0.421756220094447	0.190084773263766	0.576216758852106
Merged-chr10-26780776-4	chr10	26780257	26781257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	8245.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	6.75288423808018	6.87131635636745	6.60518825565005	6.46049923664797	6.60781430795576	6.72920003560719	-0.24422568025821	0.355645447795842	0.742489966989298
Merged-chr16-3706895-4	chr16	3706409	3707409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161790)	TTS (NM_001161790)	11215.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	3.7097204718679	3.73798840716057	3.88632102356425	3.91743764544744	3.56446702502914	3.70237478378561	-0.137865804592975	0.800795952882243	0.952697697308098
Merged-chr2-153214868-4	chr2	153214355	153215355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10586.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	7.69700038969825	7.73453483432974	7.32121756390092	7.10964002063943	7.32221436377348	7.00694617050862	-0.654206328216204	0.0108690433689723	0.106561960721745
Merged-chr19-11603417-1	chr19	11602917	11603917	+	1000.0	f1_balb.idr	intron (NM_026835, intron 1 of 6)	intron (NM_026835, intron 1 of 6)	1387.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	4.28355181596604	4.56654843950748	4.51179798618594	4.85060540869765	4.68252643127197	4.70161540928167	0.694841347258868	0.100983462685279	0.423797446064291
Merged-chr1-155096881-4	chr1	155096394	155097394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2742.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	6.83429998073005	7.00267824988342	6.84673001955949	6.71450718715078	6.8301268146118	6.89057825780656	-0.136856148398158	0.583740325128707	0.874225271981634
Merged-chr11-3290988-3	chr11	3290519	3291519	+	927.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	562.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	4.0351280498116	3.93034772874956	3.55209623106277	3.6408554864358	3.23427182257997	3.50848957715487	-1.37296948571971	0.0259069688655712	0.190817656489904
Merged-chr2-148487815-2	chr2	148487315	148488315	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44280.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.47619131700867	5.42629162836916	5.3572350463604	5.31863026008593	4.88503756412089	5.39044391975489	-0.439321065560792	0.235136544132992	0.63136085592365
Merged-chr1-164135500-4	chr1	164134999	164135999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-16336.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	3.60485929748237	3.5143547754102	3.54181757669087	3.45121375955933	3.45715780983422	3.38979569010867	-0.441721382614436	0.441513871530254	0.802671813286054
Merged-chr5-12206647-3	chr5	12206147	12207147	+	856.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-176519.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.05167552330843	4.20108817374827	4.2411628191328	3.96592705522921	3.9869305484459	4.30788424731866	-0.221954333593463	0.649926433554544	0.902446035597938
Merged-chr10-57728515-4	chr10	57728016	57729016	+	938.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-56407.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	8.02287189656293	8.41933987929847	7.65920472875073	7.96787285615346	8.61021499537603	7.71568536916737	0.122723026235928	0.705636758966808	0.922834459892351
Merged-chr7-81303932-3	chr7	81303429	81304429	+	895.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	41305.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	5.01485318507924	4.95492011400243	4.86754400582691	5.06255121457986	5.03685432191483	4.93336558758514	0.138529900284778	0.709649846968972	0.92401439884764
Merged-chr12-3855869-2	chr12	3855369	3856369	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6375.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	7.16112792605906	7.3302510016149	7.35970294239311	7.40023461901288	7.49028582043615	6.99447829416334	0.0579948071694655	0.822408438362923	0.958041123079214
Merged-chr12-35039207-2	chr12	35038707	35039707	+	829.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7982.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	7.3331427331136	7.76776648443345	7.37815682386866	7.26057020843879	7.75485010185705	7.31066700884961	-0.0618728465110792	0.823590583122533	0.958451715155168
Merged-chr5-66094079-4	chr5	66093572	66094572	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ORR1B1|LTR|ERVL-MaLR	4107.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.28069650215228	4.15569241601759	4.3495312791582	4.40054461605717	4.37476171519301	4.54052006584888	0.463322574037646	0.298733669082525	0.695444616697123
Merged-chr8-128699794-2	chr8	128699294	128700294	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	MTD|LTR|ERVL-MaLR	14140.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.66020261202507	3.74860744678747	3.77644719735694	3.6714419463552	3.76633984961666	4.20746916534403	0.527070151673147	0.341062623610116	0.730680899326597
Merged-chr7-24547036-4	chr7	24546539	24547539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009532, exon 2 of 18)	5' UTR (NM_009532, exon 2 of 18)	340.0	NM_001360170	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	6.54230033138049	6.86519219278601	6.32033632324961	6.59166792631781	6.34171121820127	6.14004220820827	-0.368841026190867	0.230440063980988	0.626271502694957
Merged-chr1-13372758-5	chr1	13372256	13373256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302702)	promoter-TSS (NM_001302702)	-327.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	7.6032258014158	7.3143236768	7.5143349468177	7.77876143289771	7.54119930576652	7.82048790853062	0.338398004718222	0.155563220407879	0.525328914111153
Merged-chr11-69655502-4	chr11	69654958	69655958	+	870.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009235, exon 1 of 2)	exon (NM_009235, exon 1 of 2)	421.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	4.70275998129685	4.85534174847765	5.41279722298704	4.83780433740969	4.99441278365735	4.96000082671591	-0.173712934071024	0.683343041547314	0.915405812537103
Merged-chr3-96489673-3	chr3	96489174	96490174	+	710.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEz-int|LTR|ERVK	-35511.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	3.9074425633494	3.79117762999624	4.28928318841	6.48571923971195	6.94085797590454	6.39763287918038	8.88205746111903	1.17180394103495e-13	2.64955060667489e-11
Merged-chr8-39308771-1	chr8	39308271	39309271	+	1000.0	f0_balb.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10791.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	4.37715973052521	4.81388789792543	4.35510942271831	3.54430831438983	3.47817499619076	3.65887135205921	-3.23129071979974	4.96144761432679e-08	3.86546941098224e-06
Merged-chr8-105303579-4	chr8	105303084	105304084	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-2017.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	4.65390758244646	4.47966159188317	4.58902028279729	5.150634378304	5.04944881018326	5.29244031009537	1.3094905432867	0.000880404537689412	0.0163227942896748
Merged-chr16-36621247-3	chr16	36620726	36621726	+	990.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	44851.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.77682752937876	3.74188562704266	3.65392189157315	3.42704028769223	3.44556582991147	3.389129879559	-1.10296624963659	0.0536092799871209	0.296847073212774
Merged-chr3-36000682-4	chr3	36000185	36001185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023644)	promoter-TSS (NM_023644)	-7.0	NM_023644	72039.0	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	6.43748089176894	6.71080472798463	6.48482513227031	6.53177605577999	6.50658484354203	6.33420590474957	-0.142090656910244	0.602607521677159	0.882397657327329
Merged-chr4-133361470-2	chr4	133360970	133361970	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8265.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	2.91685401676479	2.95065951001401	3.11861548945604	2.77281201991362	2.83697222519758	2.77592733964392	-0.973514897772797	0.171515473992188	0.549640800577546
Merged-chr14-14066220-2	chr14	14065720	14066720	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	L1_Mur3|LINE|L1	53729.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	2.88636923005004	2.93041931283302	2.93095008097818	2.85348178017028	2.75772528834341	3.28076512362395	0.28671904726819	0.692714571572939	0.91870248759071
Merged-chr15-100469025-4	chr15	100468529	100469529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	18.0	NM_134093	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	6.73703077295406	6.65011414457656	6.57335168342817	6.82367708899374	6.47909660031628	6.28649265589592	-0.162940515488004	0.568035309991056	0.868489297597577
Merged-chr8-14824002-2	chr8	14823502	14824502	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-64534.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.92206047789335	2.97534437528428	3.26391064891936	4.07560662199474	3.83040704059073	3.5791040384789	3.49473060322553	2.78879033270337e-06	0.000133056001148843
Merged-chr5-65991385-4	chr5	65990874	65991874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027961, intron 4 of 6)	ORR1B1|LTR|ERVL-MaLR	12911.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	5.14596886243129	5.07120506037106	5.21591898801153	5.84886787591616	5.45269496595136	5.31395953544328	0.82955798671264	0.0222697244201284	0.173373805159997
Merged-chr7-79721535-4	chr7	79721032	79722032	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113471, exon 9 of 9)	exon (NM_001113471, exon 9 of 9)	-7346.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	5.41088654073222	5.6222954887184	5.79825496620585	5.67398226515869	5.28441845307891	5.55067673355406	-0.199421086791878	0.566993653316013	0.867700458659165
Merged-chr9-104280596-2	chr9	104280096	104281096	+	938.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17666.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	3.94655808666093	3.84755456325439	3.66769334056932	3.62115002059074	3.71701650241227	3.57070294907157	-0.626184902754412	0.254171283646034	0.651179145391095
Merged-chr5-98034464-4	chr5	98033918	98034918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3456.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	4.05356633567305	4.00795148786791	4.28984764810968	3.56725842064211	3.37577613210394	3.76782002949892	-1.83557648813111	0.00122305549796048	0.0210787079275674
Merged-chr6-148214950-4	chr6	148214460	148215460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015615, intron 1 of 1)	intron (NR_015615, intron 1 of 1)	-2586.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	3.81492984439257	3.29922221569137	3.58599500928771	3.88854062329947	3.42751802582962	3.7109212017427	0.344124339148066	0.577567207364347	0.872148719828391
Merged-chr16-3233744-3	chr16	3233298	3234298	+	809.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-358600.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	3.36688789965004	3.30208328035435	3.27806993523163	2.91118409708601	3.03530246101764	3.88518377339661	0.166395434333085	0.828368688692093	0.9597173746685
Merged-chr8-84831673-4	chr8	84831172	84832172	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183358)	promoter-TSS (NM_183358)	593.0	NR_033145	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	6.06684394325675	6.13544697727299	6.01068445888014	6.56120133698326	6.55348557832508	6.23021929994035	0.648378420622858	0.022813821945655	0.176290164975303
Merged-chr17-69201552-4	chr17	69201034	69202034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	B4A|SINE|B4	42178.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	7.91142564647144	7.96641981364426	7.76897833121943	7.76363803643087	8.17404837099496	7.79066184033992	0.0616185279571557	0.797261154014958	0.951703695621212
Merged-chr14-25736335-2	chr14	25735835	25736835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	32521.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	4.84997723765492	4.55520904960879	5.11148635923827	4.88387173249873	4.51513098834366	4.98209331924444	-0.111426651764288	0.799769803545067	0.952280212549411
Merged-chr2-163743459-4	chr2	163742971	163743971	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	6768.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	5.39093416618648	5.27664177990894	5.08805956822474	5.44864727192603	5.31757296361369	4.88050844902275	-0.0311734570937392	0.935399592693318	0.985852245513165
Merged-chr4-126228241-4	chr4	126227741	126228741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25531.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	6.20912145065405	6.04425665094401	6.49905270106927	6.40569230727411	6.13412806550956	6.43776599365553	0.119652917647123	0.691346760025504	0.918275389711443
Merged-chr3-69114805-2	chr3	69114305	69115305	+	716.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	12287.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	4.92638291242572	5.16125289014464	5.43200822513103	5.45878640025165	5.63236533045925	5.11001276139365	0.49847157389186	0.196968628102357	0.584854070126
Merged-chr13-99337699-4	chr13	99337217	99338217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026873, intron 3 of 9)	MIRb|SINE|MIR	6961.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	7.47690255903223	7.46008080308276	7.31828815988597	7.66360354863635	7.88486797589142	7.5169244377486	0.409282813485351	0.0842166123440412	0.383991996195544
Merged-chr10-17948139-4	chr10	17947632	17948632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033432)	promoter-TSS (NM_001033432)	-65.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	7.05310037956758	6.87475188264872	6.6203660821985	6.8449450158521	6.71430862074172	6.6624472299282	-0.19664991179557	0.461746983493174	0.815107818354545
Merged-chr7-141194071-4	chr7	141193580	141194580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130443)	promoter-TSS (NM_001130443)	-50.0	NM_001172065	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	5.31709944332807	5.05504900198835	5.44606338249702	5.2490107005477	4.92593328287576	5.27500808295164	-0.255331276327257	0.499014662611184	0.834177355483594
Merged-chr8-126688179-4	chr8	126687700	126688700	+	976.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94764.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.75255456187579	2.52981044639301	2.68634049029083	2.60738755661989	2.45583020885426	2.43600628393994	-0.915072013568325	0.252278841132097	1
Merged-chr9-57558743-3	chr9	57558206	57559206	+	635.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2238.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	4.89347083172657	5.14214992978277	5.24627488226627	5.18885053729017	5.46429485364129	5.37060849428205	0.51750619889155	0.156860835250766	0.527743349341456
Merged-chr10-7472781-2	chr10	7472281	7473281	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029975, intron 1 of 5)	B1_Mus2|SINE|Alu	696.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	4.68303446378295	4.53194486030115	4.74713951275372	5.17319175483325	4.90012962229048	5.032416732952	0.867539236241797	0.0281517895399057	0.200625118870841
Merged-chr10-70288510-2	chr10	70288010	70289010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	43234.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	4.40118255058221	4.72124989370435	4.27515255401488	4.48725037487132	4.26672110115784	4.52216089773317	-0.167810667503107	0.715382527549636	0.926392907650078
Merged-chr13-108316275-4	chr13	108315826	108316826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178683)	promoter-TSS (NM_178683)	-11.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	4.87035808778082	4.83137501237769	4.85013416087995	4.86381067946396	4.85279615095732	4.67895427219353	-0.0961772235746482	0.804505042553023	0.953651704501661
Merged-chr7-96856123-3	chr7	96855608	96856608	+	978.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 24 of 32)	intron (NM_011858, intron 24 of 32)	-54559.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	4.70523187206461	4.55941387595036	4.43164411295387	4.06579606397671	3.90998277015744	4.02662886680717	-1.59390215565338	0.000721994321554914	0.0139938745650923
Merged-chr2-59387362-4	chr2	59386860	59387860	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040510)	promoter-TSS (NR_040510)	-678.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.59209394230316	5.54357841080444	5.66905483556127	5.89395734843839	5.8482926370817	5.30363300025769	0.226957158329047	0.513442362171134	0.842597552908258
Merged-chr9-119978386-4	chr9	119977964	119978964	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	4559.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	4.40861400563082	4.21681774020159	4.71066861164379	4.32449136588881	4.17691177065702	4.70410626623056	-0.106973444422655	0.825396744386596	0.958821343666982
Merged-chr4-140566975-4	chr4	140566472	140567472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112723, intron 16 of 26)	intron (NM_001112723, intron 16 of 26)	81784.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	2.51891400601919	2.52094666255148	2.48912086110601	2.87821618170893	2.62196017049502	2.88130584633141	1.61355532695281	0.0409860409149832	1
Merged-chr1-165616844-4	chr1	165616345	165617345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17696.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	8.06031770311025	8.25863516253595	7.79681769345121	7.89446368723776	8.2755421286793	7.7734414220928	-0.0715836510292241	0.782825425631699	0.946764786373054
Merged-chr2-112240464-4	chr2	112239991	112240991	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207206, intron 1 of 13)	intron (NM_207206, intron 1 of 13)	650.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	2.92085014474719	2.72836289428535	2.94691311877837	2.65758869108571	2.67531748683669	2.5854041393898	-1.2032620874078	0.113633615996278	0.450295929229846
Merged-chr13-119461999-3	chr13	119461488	119462488	+	871.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	-771.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	5.58806847874747	6.05560991445849	5.88577177525102	5.87582679777296	5.99042787845993	6.2068618982284	0.291353366457103	0.36930343526798	0.754042064418889
Merged-chr15-96936964-4	chr15	96936479	96937479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83380.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	2.41346559181344	2.66020273087339	2.41577905153219	2.54847199813503	2.64884902337396	2.68446273484362	0.697851944042323	0.386965429924578	1
Merged-chr9-44479821-4	chr9	44479326	44480326	+	862.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2999.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.62224643093545	5.78803027060113	5.74305577234653	5.54430288225338	5.66193386971492	6.0766085082051	0.0916714008189619	0.784420174930779	0.947576747080331
Merged-chr12-33168661-4	chr12	33168151	33169151	+	781.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	20965.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	2.68439930041411	2.64423334022793	2.62093564797574	2.725900327821	2.77619957331191	2.88009324738886	0.758963756369627	0.301892573563325	1
Merged-chr8-75085053-4	chr8	75084564	75085564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8554.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	7.35420090952813	7.55546349627757	7.51864098672796	7.28192929307797	7.49781355527823	7.05589266840594	-0.25916784015047	0.301451425733181	0.698200786354329
Merged-chr13-9152478-4	chr13	9151986	9152986	+	833.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	58605.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.12868891357961	4.00642445611057	4.04092589909683	3.83011939415122	4.03991285689434	4.15533204757167	-0.141983222720192	0.774768347017687	0.944493464665915
Merged-chr4-121024086-4	chr4	121023585	121024585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6838.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	4.8527302686034	4.67854584759686	4.42643038982282	4.28764922613671	4.29577979850257	4.26065092426024	-0.986663107096353	0.0272194666905929	0.196501595036513
Merged-chr9-35111760-2	chr9	35111260	35112260	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-4968.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.63858210076885	3.59634878519069	3.81230283984018	3.56092761307201	3.31181522745138	3.97178824087628	-0.158821608179583	0.793814547440016	0.950531747588938
Merged-chr14-67032762-2	chr14	67032262	67033262	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360034, intron 2 of 8)	RSINE1|SINE|B4	-23885.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	2.9917865356066	3.15927047022622	3.34685578087021	3.08122349094555	3.03945353408871	3.41672904284588	0.0600973221330164	0.928643934881387	0.983838264232875
Merged-chr10-30712676-4	chr10	30712180	30713180	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-56813.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.42282177981592	2.96000186221413	3.22832724714404	3.37304921320184	3.00139768801064	3.41188102251069	0.212739116245389	0.757948017597317	0.940006510270311
Merged-chr15-62047182-2	chr15	62046682	62047682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	ID4_|SINE|ID	7925.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	5.28171373725505	5.74929437330253	5.59295466115342	5.32657591941143	5.42615689065505	5.57384821238479	-0.222168877969131	0.527936130459643	0.850256644600522
Merged-chr10-80934708-2	chr10	80934208	80935208	+	840.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	4617.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.15406198826441	3.84287155883255	3.71794684131298	4.13905791951845	3.93346156974667	3.89977082078959	0.209347297205287	0.694123827506256	0.919190704827629
Merged-chr4-120858858-2	chr4	120858356	120859356	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	4057.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	4.51941322019856	4.58957428701662	4.66232659949747	4.42127103583881	4.56336505710215	4.72762134097008	-0.0413744606629844	0.92177027814385	0.982542868764899
Merged-chr6-87916147-4	chr6	87915653	87916653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173737, intron 2 of 6)	intron (NM_173737, intron 2 of 6)	2177.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	5.54011509858612	5.66747148888947	5.21986961256624	5.33773049850563	5.28993581578294	5.02867553538827	-0.521393653836081	0.152979163497472	0.521577145515167
Merged-chr2-59395526-8	chr2	59395020	59396020	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	-8838.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.77234921527822	6.86311868494482	6.89601337332714	6.86791393834998	6.89612011543673	6.71207149535827	-0.0131462725191382	0.957860664988151	0.990000537228272
Merged-chr1-60961232-4	chr1	60960729	60961729	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16685.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	4.8962343819022	4.89134232490094	5.00698308879673	4.86944155581258	4.95123965426964	5.20063452139382	0.168924946041512	0.657415797380408	0.904798742244684
Merged-chr1-85280543-2	chr1	85280047	85281047	+	815.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-9981.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.93837111406875	4.12828755499108	4.1617887555002	3.30366236522214	3.06187341019213	4.6017133209408	-0.406483909818519	0.835186508767922	0.961538022270266
Merged-chr8-126616030-4	chr8	126615517	126616517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22581.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.8608385798018	4.62263919537099	5.01546676695596	4.81407163448424	4.88818807385127	5.01240260382187	0.156961099077917	0.693595726391819	0.918960880648635
Merged-chr9-90218881-2	chr9	90218381	90219381	+	610.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_194334, exon 9 of 13)	exon (NM_194334, exon 9 of 13)	51888.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.30097274101557	3.43199562329172	3.57928122928307	3.26338239893927	3.49946250407279	3.38275930450838	-0.17953549504681	0.766949979844583	0.942573703853445
Merged-chr11-3165576-3	chr11	3165111	3166111	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030207, exon 8 of 33)	exon (NM_030207, exon 8 of 33)	27852.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.12429254698312	6.81288015468805	6.88528867845944	4.88585356811919	4.57747134577755	7.24850638765364	-0.634423299612517	0.65512447389887	0.904151934338327
Merged-chr8-83734547-2	chr8	83734047	83735047	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	PB1D10|SINE|Alu	6764.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.08215820652824	3.95731846450628	4.45657247558378	4.25450631482907	4.20975115653751	4.59755387108606	0.500352331819634	0.314612577868439	0.708958249946571
Merged-chr1-156575835-2	chr1	156575335	156576335	+	946.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	17048.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	3.49160862224304	3.71400160196543	3.39440755768371	3.76876432640184	3.60638814982394	3.58160133663982	0.378404218284523	0.513361159249899	0.842549813251827
Merged-chr6-122571482-4	chr6	122570974	122571974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17665.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	7.99577688366715	7.69642290553665	7.55715705724698	7.8454487466907	8.18922881147115	7.60384020300087	0.204606449401449	0.445592683065724	0.805266293954189
Merged-chr7-19229414-2	chr7	19228914	19229914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	1025.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	7.20891946437419	7.31399010127897	7.11935897212271	7.24172420143773	7.56262363779494	7.34436104943258	0.259398898129774	0.286082381631949	0.68342985932029
Merged-chr6-128851310-3	chr6	128850808	128851808	+	803.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254946, intron 2 of 2)	RMER12B|LTR|ERVK	-24993.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.3359466013893	4.41793530595868	4.2047078815089	4.27826628240469	3.79552327965595	4.17970176438948	-0.645566173152346	0.197237217407101	0.585213036157827
Merged-chr14-33101829-3	chr14	33101324	33102324	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 20 of 58)	intron (NM_001146022, intron 20 of 58)	83242.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	2.73189838452304	2.50091299298762	2.75142389687147	2.35959564110747	2.51431293431019	2.64318974965252	-0.902105825401585	0.267371290283581	1
Merged-chr17-45628281-2	chr17	45627781	45628781	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26179.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	2.48014961027354	2.48221460941843	3.11615703838555	2.42768447051312	2.32989307803766	2.86623446188108	-0.851973828232362	0.343877983242627	0.732645864957409
Merged-chr2-52963602-2	chr2	52963133	52964133	+	768.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	105765.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	2.89737633040791	3.0062155075863	3.07204249123988	3.06572395087509	3.1086132486837	3.08562287270251	0.441929194623358	0.503479370549959	0.837052889076112
Merged-chr7-30587859-2	chr7	30587359	30588359	+	836.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029274, intron 1 of 36)	intron (NM_029274, intron 1 of 36)	867.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	4.73514395247366	5.11733747937742	5.23427947304912	5.17732849481912	5.28079305979457	5.62752413532687	0.669999727510315	0.0886531501294438	0.395234211100019
Merged-chr19-8020112-4	chr19	8019654	8020654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54127.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	5.46041900806326	5.5789578918555	5.58181192634304	5.7299021027045	5.69154223552461	5.40633663068352	0.163269815895549	0.619129060436281	0.889657217918386
Merged-chr2-166697484-4	chr2	166696988	166697988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	16344.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.42509102077816	6.93625425458379	6.955950140833	7.72166652520733	7.76849839317811	7.26812803409313	0.706362782143522	0.0128908150711977	0.120275727791458
Merged-chr13-93248868-3	chr13	93248365	93249365	+	954.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54892.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	2.90529738417379	2.65137082653881	2.69447586032992	2.73391159656969	2.5752753172038	2.83026913283258	-0.237155961355052	0.753545974389106	0.938563718495545
Merged-chr16-91885683-2	chr16	91885183	91886183	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	45947.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.14842910602932	3.33131329096024	3.42024002850462	2.96442435992328	2.83427840387609	2.78376376703284	-2.08935428850474	0.00437479412912747	0.0556772514372038
Merged-chr7-16046183-4	chr7	16045674	16046674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25671.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	7.0323143621994	7.19014192687806	7.32398470141005	7.27475929775921	7.25326698048187	7.04314686622693	0.0269650220093372	0.912507672969221	0.980364960151991
Merged-chr1-7113085-4	chr1	7112585	7113585	+	973.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	24165.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.89790265593737	4.25577616602815	4.2843029581211	4.25905456923201	3.98803747453985	4.07855391825408	-0.120145658417	0.810194577750155	0.954976703432846
Merged-chr12-99511923-4	chr12	99511422	99512422	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51919.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	3.59956856419432	3.51134102265901	3.67620251478578	3.91828767188744	3.78729261407793	3.52483354194141	0.562165884597045	0.316192737905417	0.710322935001732
Merged-chr11-73193306-4	chr11	73192816	73193816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357891, intron 3 of 11)	intron (NM_001357891, intron 3 of 11)	5703.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	4.53084037136976	4.22068111290305	5.06016399475336	4.27420104715304	4.13891168972349	4.15613171543442	-1.14897415604934	0.0240333526584377	0.18229418486812
Merged-chr15-38292188-4	chr15	38291663	38292663	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	7737.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.20838831414393	4.51136811489759	4.72718379957889	4.69036840152105	4.41481977380983	4.82750357045187	0.378966815758952	0.40930763250222	0.782658446423422
Merged-chr7-4497464-2	chr7	4496964	4497964	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029834, exon 2 of 22)	exon (NM_029834, exon 2 of 22)	4216.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	4.72554755882396	4.4380015107676	4.89555259436688	4.76460647121539	4.93633339273623	4.92502987717693	0.43197436255088	0.29652743207333	0.693171366955017
Merged-chr15-66810248-4	chr15	66809742	66810742	+	846.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	21587.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.83939070302729	4.35322815538299	4.72632487376352	4.5651160236082	4.61444147677453	4.63615561548402	-0.116862832230865	0.788681628743132	0.94895503373255
Merged-chr7-34229570-4	chr7	34229104	34230104	+	878.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008155, intron 1 of 17)	intron (NM_008155, intron 1 of 17)	732.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	5.22697104288464	5.55120848223555	5.62018828908481	5.55269654400886	5.37470490987217	5.33658507313689	-0.0869811687040915	0.803209933433419	0.953422605427866
Merged-chr1-153501992-8	chr1	153501485	153502485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14325.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	7.45787598630331	7.38503551354372	7.49047474746214	7.48153131835568	7.56278378961227	7.41285612117156	0.0710278705591197	0.751257318830753	0.937795265092478
Merged-chr6-50378101-4	chr6	50377461	50378461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	L1MB1|LINE|L1	4876.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	7.69009371758169	7.70217363515587	7.4737734104929	7.93293137581332	8.15226332532431	7.55173336696391	0.404409736110663	0.115331743904744	0.453436200473726
Merged-chr10-4394115-3	chr10	4393542	4394542	+	966.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-5934.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.51471275692749	4.79873846217317	4.76332635758573	4.78297551648773	4.5597902168564	4.67388407739988	-0.0578660876960304	0.889230444970568	0.974207858658472
Merged-chr5-124631784-2	chr5	124631283	124632283	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 1 of 19)	intron (NM_011596, intron 1 of 19)	2731.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	3.20331654942734	3.22703107620833	3.07618927620685	3.14328131403844	3.08344056717701	3.4295038640838	0.192209956051175	0.767713255717544	0.942681727491668
Merged-chr4-149426622-4	chr4	149426014	149427014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_022022, exon 1 of 27)	5' UTR (NM_022022, exon 1 of 27)	117.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	6.99913450555382	7.4475889715806	7.33240990258027	7.34607455352608	7.25717558869068	7.06298106463069	-0.0619826736807379	0.811808987107417	0.955319632415911
Merged-chr7-97357578-1	chr7	97357078	97358078	+	625.0	f1_balb.idr	Intergenic	Intergenic	-14039.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	7.0445174320793	7.07090997517504	6.94450056103037	6.81277532614463	7.03731041693698	6.87327965760616	-0.164594899077759	0.504402686361391	0.837664432515541
Merged-chr18-35498968-4	chr18	35498445	35499445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030749)	promoter-TSS (NM_030749)	-20.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	7.92222339150877	8.30517967264741	7.79944479615123	7.99856686511376	7.93777538079856	7.50872443928909	-0.275619373883744	0.300654951824456	0.697365586816021
Merged-chr17-26506228-4	chr17	26505721	26506721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013642, exon 4 of 4)	3' UTR (NM_013642, exon 4 of 4)	2251.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.99053196325134	7.87213280461397	7.56227241064185	7.63291785645947	7.68444495817642	7.69507776638739	-0.227105126619016	0.33276885798833	0.72385839003171
Merged-chr16-14132041-4	chr16	14131534	14132534	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 15 of 26)	intron (NM_001081154, intron 15 of 26)	27240.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	4.69681835226625	4.78416938873384	4.57475863750497	4.38797861785379	4.78551461147642	4.55704596369884	-0.228016402202986	0.596567800672663	0.879987476437642
Merged-chr10-68256336-2	chr10	68255836	68256836	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	22390.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.38483662164252	2.61160920136661	2.38692825686134	2.61513022275295	2.41610098690573	2.77909419594191	0.803373903401746	0.333986361350865	1
Merged-chr13-54758168-4	chr13	54757666	54758666	+	652.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033610)	TTS (NM_033610)	-8292.0	NM_012014	26913.0	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	2.39795561898615	2.43446525901164	2.5617866195993	2.49781050588131	2.42014480074742	2.69578637998712	0.445267494126618	0.576603243835233	1
Merged-chr6-72139717-4	chr6	72139223	72140223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-16526.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	7.81765607577647	8.11949437086538	7.4441143397522	7.79336187181088	8.3191487321215	7.64755469575194	0.187546149388178	0.530315773620462	0.851072941285938
Merged-chr9-64744057-4	chr9	64743548	64744548	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6292.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.44960922032503	4.81731605417644	4.86713521768546	4.8745759798658	4.72645371771315	5.14467198152891	-0.359928387363805	0.405644546490782	0.780359083171225
Merged-chr17-36951759-4	chr17	36951260	36952260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	32.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	7.64052740769314	7.53935852679885	7.52871584068125	7.54460390658165	7.73265065380617	7.31552610938143	-0.0286270358765023	0.904884133991753	0.978169239239039
Merged-chr14-57407575-4	chr14	57407080	57408080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9097.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	6.3300656400065	6.32913759559869	5.61824537987088	5.80323091226195	5.56856128173934	5.62233345600639	-0.842202004506388	0.016509133876096	0.142159992917541
Merged-chr2-35109897-2	chr2	35109397	35110397	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	405.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	8.09602604981529	7.96220719907217	7.54472938033126	7.84758473323235	7.85875432392307	7.71781326616421	-0.12192539198638	0.622026029439596	0.890937721901588
Merged-chr5-140321611-4	chr5	140321101	140322101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	-21.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	6.56161858279352	6.95853515448326	6.92352290780028	7.00617010794592	7.155396897848	6.62142489511116	0.204527128373059	0.478372407360779	0.823771292116755
Merged-chr11-61764959-3	chr11	61764453	61765453	+	890.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2865.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	3.95892213874313	4.22177069363324	4.16582176024601	3.81776008387486	3.84067459487634	4.0982644825288	-0.60446127733147	0.232560485424268	0.628847422045448
Merged-chr5-35728120-4	chr5	35727633	35728633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1143.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	8.07388220371956	8.41517730442769	7.82715833750025	8.0671079887269	8.26973287830554	7.34488168087517	-0.241738719422588	0.440339573253569	0.801751735698024
Merged-chr3-137918555-4	chr3	137918071	137919071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019920)	promoter-TSS (NM_019920)	16.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	8.01984848824698	8.27132403782714	7.74787842311817	8.30724744716614	8.45574270126511	7.83116523192594	0.274622371518707	0.312880573280755	0.707532595643769
Merged-chr11-19920475-4	chr11	19919949	19920949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3993.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	6.83424692429597	6.90504410422865	6.5273242001718	6.89305021772905	6.84977941104888	6.69202985288956	0.0661253639759676	0.803216200455532	0.953422605427866
Merged-chr4-121009979-4	chr4	121009492	121010492	+	915.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	L2a|LINE|L2	7255.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	5.89008269767985	5.89372308345314	5.84007918125716	6.09019101282961	6.25718867682578	5.99971665362126	0.436778679628106	0.137256177778287	0.495027571456897
Merged-chr2-34370543-2	chr2	34370043	34371043	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	1502.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	3.51952889427888	3.32871624021451	3.39386281002671	3.37354300264232	3.62955386650298	3.40861369348667	0.242885080390621	0.68452048305534	0.915930759709583
Merged-chr3-51217183-1	chr3	51216683	51217683	+	630.0	f0_balb.idr	Intergenic	Intergenic	-7264.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.60631452162516	3.28467192149387	3.74879367834746	3.32238149053721	3.4560000204239	3.95278607597098	0.147967843664731	0.817279853182052	0.956754861188725
Merged-chr4-3779886-4	chr4	3779388	3780388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	MLT1A0|LTR|ERVL-MaLR	55767.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.57771324643329	4.30770323322044	4.62367654405192	4.45142831544237	4.68518750281903	4.83683230612226	0.384584748056697	0.379035972547456	0.76158662232514
Merged-chr3-149085541-2	chr3	149085041	149086041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130906.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.26851243450646	6.45057429014069	6.32623683802633	5.4145822224349	5.20343866814372	5.36106412680468	-1.85931141812003	2.48289897446251e-09	2.54429874220538e-07
Merged-chr7-29007949-3	chr7	29007436	29008436	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009109, intron 101 of 105)	PB1D9|SINE|Alu	25082.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	7.64128886732867	7.88451104811625	7.7896086702821	6.11851445632169	6.54985835870966	6.16232333084226	-2.23511388196237	2.99261053879641e-15	8.55701504165538e-13
Merged-chr1-121509345-4	chr1	121508913	121509913	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010483)	TTS (NM_010483)	19052.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	5.9189904293066	5.75265236887512	6.13880827229935	6.29374712950808	6.51485248405317	5.94800110244914	0.594064866898413	0.0644268345856152	0.330890042896355
Merged-chr7-25436872-4	chr7	25436384	25437384	+	855.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23998.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	3.87015053102341	3.88562011191016	4.41930530275073	4.42132684816589	3.84737911405624	4.73771077480893	0.810052326671317	0.15799768743296	0.529527616804567
Merged-chr9-90251886-3	chr9	90251372	90252372	+	702.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	18897.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.23821415858376	6.13349861866689	6.48466364765666	6.27828790828378	6.19754396763603	6.44030794879065	0.0299854262245258	0.917087909810406	0.981522312365153
Merged-chr7-100234337-2	chr7	100233837	100234837	+	835.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	RMER15|LTR|ERVL	6730.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	3.87844338880788	3.5191288812117	4.07010826086753	3.71916285851584	3.66981288429991	4.04973031270237	-0.0598480752350823	0.916836880419317	0.981431795618389
Merged-chr12-3900030-2	chr12	3899530	3900530	+	634.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 15 of 23)	exon (NM_001271753, exon 15 of 23)	8286.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.90534957872687	2.76114486308555	3.02480293016103	2.72145839086474	2.51639105856974	3.09640929196086	-0.503620560816165	0.524185786080565	0.848618613697136
Merged-chr7-139233902-4	chr7	139233390	139234390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-14592.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	3.78747995935034	4.08325923204793	3.7108823187735	3.28743053884223	3.14625611391841	3.45129471694754	-2.24636421779264	0.000356808164993934	0.00802630272852535
Merged-chr9-120110348-4	chr9	120109838	120110838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144793)	promoter-TSS (NM_144793)	-61.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	7.34614982837923	7.59696310697139	7.09583477851666	7.18640436535911	7.6479414673955	7.40537300829964	0.0905548742155134	0.739064431564127	0.934159689508642
Merged-chr10-71344872-4	chr10	71344400	71345400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134007)	promoter-TSS (NM_134007)	-51.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	6.29948802785962	6.73860850616169	6.36577385108872	6.51730803966826	6.38361904922153	6.30613322721606	-0.134178472785969	0.644877781231072	0.900348844267845
Merged-chr7-64001776-4	chr7	64001272	64002272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62857.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.1302120277182	5.17951842811834	5.40636094346914	5.48662627609491	5.15284592843644	5.08420351065419	0.0415276793631003	0.910436602441321	0.97984424692051
Merged-chr11-61497806-4	chr11	61497304	61498304	+	692.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-3538.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	4.03774039708967	4.03578945475619	4.35521808275242	3.99243718768101	4.30496161876301	4.64871215912301	0.518594558357507	0.308872778765	0.70476767553933
Merged-chr2-26935170-2	chr2	26934670	26935670	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 1 of 18)	intron (NM_198628, intron 1 of 18)	1101.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	3.05570711798804	2.76284016769742	2.91510549195894	2.88537847754223	2.74501887460127	3.15993504779268	0.0864252915159277	0.905587488264004	0.978425344945364
Merged-chr9-44326716-6	chr9	44326183	44327183	+	991.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007875)	promoter-TSS (NM_007875)	-162.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	6.93562707416886	6.81525593750223	7.01200923502778	6.66538228072121	6.7640685722587	6.79148495446677	-0.277775087886433	0.265933509459595	0.66375167194574
Merged-chr5-148550105-2	chr5	148549605	148550605	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1568.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.52518808988087	5.68619513842538	5.79677402857593	5.90098494255108	6.10667252504945	6.08787220877681	0.656981468044879	0.0327226303581581	0.220267483870986
Merged-chr15-82145340-2	chr15	82144840	82145840	+	660.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1929.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	2.94095590097449	2.99311703683152	3.28608312881083	3.19370580356828	3.10981974100531	3.07452097521637	0.234424948587341	0.725316347909697	0.929624045792117
Merged-chr11-34001899-3	chr11	34001381	34002381	+	933.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-8688.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	4.13012181021157	3.98310851423342	4.34390382672254	4.39841518637836	4.14953603384483	4.28148201243125	0.347467440498695	0.467265170660331	0.817892453953778
Merged-chr7-28437897-2	chr7	28437397	28438397	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290550, intron 1 of 5)	B1_Mus2|SINE|Alu	450.0	NM_001290550	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	5.51223364489455	5.51552525942581	5.6500764604013	5.31268249412604	5.70452409109333	5.92683320160945	0.205339117189514	0.55634966602791	0.86357390983939
Merged-chr13-43547054-4	chr13	43546533	43547533	+	930.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 6 of 8)	intron (NM_001081059, intron 6 of 8)	13158.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	3.18411898361956	3.22394183935561	3.30994756692248	3.583900540055	3.38798326700834	3.32449389034196	0.798090529972179	0.190924402434726	0.577487433640144
Merged-chr1-85087065-1	chr1	85086565	85087565	+	692.0	f1_balb.idr	Intergenic	RMER19C|LTR|ERVK	22788.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	2.81814445164443	3.14900318105466	2.75069423970745	2.34811239642107	2.26360991790354	2.56420628882648	-4.27148807087878	0.000259314195291695	0.00619139614399752
Merged-chr6-30510502-2	chr6	30510002	30511002	+	602.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	653.0	NM_027073	75647.0	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	3.38449557386648	3.72716250342204	3.80266489673558	3.62490818992165	3.34866441483137	3.56857777097258	-0.465110851169908	0.435019293886012	0.798753078814766
Merged-chr19-11588344-4	chr19	11587839	11588839	+	800.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	16465.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	4.57063839941332	4.68787037725679	4.71902972777407	4.64912461644135	4.65477493980468	4.74631166642698	0.0545257150642058	0.892572963237466	0.975146620821922
Merged-chr1-74702481-3	chr1	74701959	74702959	+	905.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-11076.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	4.03502912923526	4.29252242090555	4.16893162591808	4.45051280491753	4.26574342900216	4.09111207986367	0.301676217453085	0.528405550933836	0.85053360857083
Merged-chr11-97415460-4	chr11	97414934	97415934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34726.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	7.01574301208453	7.2920963662297	6.50998968890152	6.56672335502293	6.43623555527773	6.09299279304141	-0.944621470783737	0.00355022336210735	0.0476693538025219
Merged-chr3-97994228-4	chr3	97993735	97994735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19303.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	7.3423937935114	7.14047985816939	7.09189699140391	7.00409030831276	7.13825760436761	7.18701781075259	-0.135158150374013	0.577792444081432	0.87219514592351
Merged-chr19-7341313-2	chr19	7340813	7341813	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007928, exon 1 of 18)	5' UTR (NM_007928, exon 1 of 18)	547.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	6.93742661218873	7.19176512088246	7.34217046412923	7.2375114800218	7.13977227767138	7.22114394683681	0.0552174110204598	0.8247094440657	0.958596193929081
Merged-chr4-3647223-4	chr4	3646733	3647733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9273.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.48333537400276	7.2728455150162	6.89753107755091	7.31501759509184	7.49450204700926	7.13993386774701	0.120047290296684	0.661205727140795	0.906299831450979
Merged-chr7-67372858-4	chr7	67372368	67373368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-10.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	8.26340610138724	8.1969351595848	8.09350719965511	8.30013185306916	8.13908506708848	8.31166788953955	0.0849050299198062	0.685959877101619	0.916538830253462
Merged-chr6-31215724-3	chr6	31215246	31216246	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	2728.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.98395372082256	6.99713659225118	6.49878765620558	6.26384280821594	6.24146740392847	5.96798761249213	-1.09847149218121	0.000230615612411441	0.00561905237995055
Merged-chr17-42449303-3	chr17	42448789	42449789	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	132689.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	3.65537526459344	3.66288961541984	3.76455232552184	4.56527501110186	4.59309953654206	4.42852970088456	2.53258496571748	6.85596548561633e-07	3.88075630018478e-05
Merged-chr9-107555282-4	chr9	107554788	107555788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	705.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	8.39130047563973	8.44816021775354	8.27236380872632	8.38857380294551	8.6343581896601	8.36481677183348	0.135997315009432	0.525162791518193	0.848874487604023
Merged-chr8-105288676-2	chr8	105288176	105289176	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166394, intron 1 of 6)	intron (NM_001166394, intron 1 of 6)	852.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	4.41364155261491	3.9679123638434	4.00052698139461	4.3771419445262	4.53101748946637	4.31773382925592	0.70567358077439	0.151209789409877	0.518506648409409
Merged-chr14-70290087-2	chr14	70289587	70290587	+	615.700012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	-590.0	NM_001304992	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	3.4271424333136	3.61983043705433	3.41500695578395	3.70622603380612	3.40319938240069	3.70340244488561	0.396024770810523	0.500567272238897	0.83513356465285
Merged-chr17-64590682-4	chr17	64590172	64591172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10977.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.18478847779333	5.03326383720367	4.93203151664543	5.48016491715791	5.58064828520736	5.14923284874772	0.738940364465824	0.0453839307178496	0.268948515573736
Merged-chr1-151572048-4	chr1	151571552	151572552	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	679.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.39161313690434	7.10082173351417	7.06465985794704	7.41994563078044	7.40245881732731	7.37528782623368	0.297133636332327	0.219170828381439	0.613227215079062
Merged-chr15-66685317-1	chr15	66684817	66685817	+	582.0	f0_c57.idr	exon (NM_009375, exon 11 of 48)	exon (NM_009375, exon 11 of 48)	14547.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	3.86306855825606	3.64297588330515	3.90183966830998	3.89165717759244	3.90743205987624	4.23394164678646	0.658876811752402	0.212602457871182	0.60512503641463
Merged-chr5-120116472-4	chr5	120115966	120116966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028762)	promoter-TSS (NM_028762)	-47.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	5.59355439150518	5.91477428515843	6.04811329749467	5.97324305282118	5.79189200656279	5.78093239055613	-0.0104043041010949	0.974219027034885	0.994260005145451
Merged-chr11-76777807-3	chr11	76777303	76778303	+	766.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-14225.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	4.81082776448644	4.68003911345599	4.76466243481639	4.60904578349853	4.89298040113688	4.71332006077564	-0.000283648322008356	0.999440431968224	0.999920050950963
Merged-chr4-142071072-4	chr4	142070576	142071576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-13222.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	5.90037813281236	5.96964675693649	5.53206267553556	5.85810638482432	5.88062100653243	5.79388450098329	0.0337287991665745	0.915846877688704	0.981201223155309
Merged-chr6-29781961-4	chr6	29781467	29782467	+	977.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	13524.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.23085080275523	5.28211150851519	5.33406227572543	5.2419985608949	5.35892779381353	5.48451590802007	0.160749479934106	0.63873325267107	0.897735152330232
Merged-chr17-27825707-3	chr17	27825211	27826211	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-5169.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	7.82640766792611	7.84223440083551	7.8149804846817	7.71153378353123	8.0944799457095	7.69703103734257	0.0407486686406189	0.863017028420883	0.9681540325304
Merged-chr18-62095637-4	chr18	62095066	62096066	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84415.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	4.82618704859774	4.85284078980582	4.74660253163817	4.52686801334787	4.54556242241043	4.43471807506089	-0.724927841974436	0.0763528966186603	0.363849253871227
Merged-chr4-148160129-4	chr4	148159606	148160606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-12.0	NR_104374	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	6.13502955773403	5.8524241386972	5.83547997137898	6.00474724420425	5.53911299580361	5.59804726879976	-0.394049308563222	0.239897837189955	0.6368091379092
Merged-chr11-79962450-4	chr11	79961941	79962941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144826)	promoter-TSS (NM_144826)	-54.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	7.11298857278618	7.17543027813379	7.15002487580081	7.16716137230225	7.31235891057206	6.92447279628552	0.0134798198588487	0.956659084585154	0.989887454023164
Merged-chr12-102381431-2	chr12	102380931	102381931	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	58382.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.4377808317711	6.46003803655135	6.87069642426464	6.49671796235897	6.78588785288234	6.09019052651476	-0.151025794942062	0.640655267931491	0.898535815546711
Merged-chr3-90211918-2	chr3	90211407	90212407	+	712.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027015)	TTS (NM_027015)	1740.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	3.62029810094314	3.43100654355552	3.4212456117775	3.22479119022622	3.38041696961523	3.79035839994017	-0.056562635855657	0.928346674832216	0.983802612059568
Merged-chr14-18240510-2	chr14	18240062	18241062	+	814.650024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1456.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	2.83273349864579	2.97193885799917	2.77575393694921	2.76660029612004	2.70828953751394	2.90964229283365	-0.379420980473543	0.598885916362325	0.880844471295403
Merged-chr12-100022724-4	chr12	100022214	100023214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	58215.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.09484431102934	5.78480376461923	5.88386664808347	5.45979572731387	5.49902347267404	5.66771867156895	-0.713688657101537	0.0258469341585218	0.190594797719096
Merged-chr1-135146885-6	chr1	135146424	135147424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026823)	promoter-TSS (NM_026823)	90.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	8.56911253883949	8.69359318198556	8.35104401371923	8.31537382761474	8.26596977090581	8.19007337508037	-0.405453082385427	0.0593235505364623	0.315452070107231
Merged-chr4-150025795-2	chr4	150025277	150026277	+	565.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-16754.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	3.16795174744117	2.96729001085895	3.33530076172389	3.05843091061283	2.6260520818427	3.01603016526116	-1.15561945457217	0.128326051487193	0.479145348536969
Merged-chr5-124354800-4	chr5	124354318	124355318	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013812)	promoter-TSS (NM_013812)	-190.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	4.51340390041527	4.32771878901779	4.66089178111509	4.37369522231257	4.0000013007678	4.53586388021952	-0.493514014642899	0.30408695378063	0.700651940638246
Merged-chr5-73255988-5	chr5	73255440	73256440	+	864.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028194, intron 1 of 62)	CpG	678.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	5.78705880954556	5.90012141608233	5.75999500690819	5.93974239885024	5.41130888527747	5.84681390117655	-0.138138844412725	0.681316931416087	0.914666331546785
Merged-chr17-48264856-4	chr17	48264339	48265339	+	834.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172623, exon 2 of 6)	exon (NM_172623, exon 2 of 6)	544.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	6.99164570490096	7.18626329743976	7.43849632001456	7.3371492474429	7.38144609335268	7.1864843433669	0.146295285983004	0.562979770800849	0.865755360453189
Merged-chr5-148492443-2	chr5	148491943	148492943	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31C_MM|LTR|ERVK	59230.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	4.96678592659148	5.10031664401825	4.46321723026465	3.9210812745682	4.04412582575296	4.24912846045336	-2.09729692713386	1.7963740293126e-05	0.000665506189808738
Merged-chr11-34032418-3	chr11	34031889	34032889	+	764.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-14539.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.69905731124985	7.76864299628918	7.62085787173345	7.53302083498666	7.74383392420377	7.74921292805125	-0.0309936866217987	0.889791589566802	0.974313026039223
Merged-chr7-99435684-1	chr7	99435184	99436184	+	651.0	f1_balb.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-30320.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.10688184805714	3.18712203757115	3.48542477091711	2.93462005730003	2.96434693058855	2.94680044866962	-1.41374252870182	0.040661483298655	0.251457502959084
Merged-chr9-118855812-2	chr9	118855312	118856312	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	ORR1D2|LTR|ERVL-MaLR	-70724.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.00275677989051	3.88223180296245	3.82625332623549	3.86814140832065	3.70919950362173	3.94594964475101	-0.226591231425427	0.661795300389901	0.906495637422278
Merged-chr1-125454682-4	chr1	125454204	125455204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18977.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.76901651939969	5.97884587750945	5.65101226022887	5.3165438492772	5.81956254452807	5.416472955708	-0.478277694969029	0.176304024445236	0.556486421902461
Merged-chr5-97055819-4	chr5	97055299	97056299	+	965.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 9 of 15)	intron (NM_080708, intron 9 of 15)	55797.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	4.18084524293317	4.12075900645731	4.28170440174553	4.4565727223587	4.00371870083451	4.0682003326059	0.000547053144569516	0.999111551794782	0.999864283693757
Merged-chr9-21506844-2	chr9	21506344	21507344	+	670.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001324510)	TTS (NM_001324510)	3050.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	2.49291358232035	2.31717822178091	2.68985310940995	2.44837627486649	2.24795639017456	2.45602630105973	-0.7452066504468	0.379000638856264	1
Merged-chr11-4594878-4	chr11	4594378	4595378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-63.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	8.24248734494245	8.66465990158156	7.92843157034309	8.52415954143913	8.57921309857673	8.13112814887611	0.151086898784058	0.585093938999132	0.874817999249606
Merged-chr16-57216612-3	chr16	57216118	57217118	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	14848.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.72323273747739	6.58550876521774	6.72894918027067	6.9296204930681	7.29873048410559	6.90864687402276	0.602521682033626	0.0232840480515912	0.178580428636446
Merged-chr8-26119313-4	chr8	26118812	26119812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207659)	promoter-TSS (NM_207659)	-56.0	NM_001357292	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	8.21988028460372	8.56853313193377	8.06915101771632	8.08316381868485	8.09228758310274	8.0745392174163	-0.318170500633854	0.174726756879036	0.55419165915952
Merged-chr9-111271736-4	chr9	111271241	111272241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	-104.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	8.19094288844718	8.64586765435373	8.12482348322385	8.12018632596145	8.23472136222784	8.20098851717305	-0.22706939949242	0.348033362428467	0.735982909356061
Merged-chr3-108562455-4	chr3	108561959	108562959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	7.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	7.88446797470544	7.95300045040413	7.57456951937517	7.93165712228998	8.10272206932221	7.75458223748753	0.174518815552195	0.469086410763611	0.818883765302854
Merged-chr4-136311374-2	chr4	136310874	136311874	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355182)	promoter-TSS (NM_001355182)	-224.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	6.75958837105587	6.66952834174166	6.68796119632417	6.99614441487911	6.66630378467695	7.00724669526237	0.287497378081304	0.273928919433284	0.671314237996942
Merged-chr6-71633000-4	chr6	71632471	71633471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-54.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	8.10883505738184	8.14240293268203	8.07227719077676	8.13023975057647	8.07336971375793	8.09309922851389	-0.0152196356964984	0.940575965501577	0.986854020344681
Merged-chr11-75268054-4	chr11	75267534	75268534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177708)	TTS (NM_177708)	74041.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	5.36427109948762	5.87186390987481	5.88920451668254	5.31520048246524	5.35476110343218	5.30722723938879	-0.756824852280936	0.0339073821917062	0.225258719154291
Merged-chr3-127572735-4	chr3	127572231	127573231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197997, intron 7 of 25)	intron (NM_197997, intron 7 of 25)	19242.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	3.6558410018027	3.71014542719333	3.4246095162428	3.64753574557903	3.95514724442106	3.87366877905351	0.75331167988772	0.185390140209469	0.569470877644115
Merged-chr10-67290785-4	chr10	67290279	67291279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5498.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	7.44010046746225	7.04511092601334	6.84480487094832	7.41953868010617	7.63152335927714	7.13459150298986	0.409314707614887	0.154865621756683	0.524144738559782
Merged-chr7-138919220-4	chr7	138918717	138919717	+	888.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9711.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	4.45256775153167	4.49042167886513	4.53730641346933	4.09460206790925	3.97031091454176	4.07327705820775	-1.23663781641004	0.00741436101943568	0.0814972459319953
Merged-chr11-116630855-2	chr11	116630322	116631322	+	698.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-3803.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	2.97764940877424	2.66505376681247	2.70620900363845	2.43028298371712	2.44244440605356	2.37984423445722	-2.33242306957366	0.00813023087786636	1
Merged-chr9-61982403-2	chr9	61981903	61982903	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 2 of 7)	ID_B1|SINE|B4	-35604.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.3474358969542	4.27927801613041	4.53479266188895	4.25974884796639	3.85532833788711	4.63729856782592	-0.280587610443839	0.588727731939614	0.876650937479947
Merged-chr17-34893249-2	chr17	34892749	34893749	+	666.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1310.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	3.06602757974045	3.04467966340941	2.99343521579318	3.18395502963711	3.12418784395214	3.12663709101285	0.480935668524955	0.458244639190186	0.812946292086582
Merged-chr11-110563512-2	chr11	110563010	110564010	+	764.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	84170.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.80307286154226	3.76709694227518	3.95518481665818	3.30708047437808	3.31100675976273	3.47079765080766	-1.77367871526337	0.00258659055566008	0.0376342996504558
Merged-chr5-137672113-4	chr5	137671622	137672622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	intron (NM_001303271, intron 1 of 12)	12631.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	5.79924462670134	5.70635586614019	5.84730633452938	5.65784038420227	5.80910598310938	5.40704768272645	-0.240895842551293	0.460113755054454	0.814248395979731
Merged-chr5-92656389-4	chr5	92655912	92656912	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360020, intron 9 of 9)	intron (NM_001360020, intron 9 of 9)	18715.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	2.58689986037649	2.51340263023289	2.44769146287073	2.51345578705218	2.40903596610823	2.64923503325777	0.0182684087468526	0.981634632288084	1
Merged-chr3-95634910-2	chr3	95634410	95635410	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9930.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.86096734944084	6.72092736904725	7.16195680066035	6.85112475960868	7.14594800807386	6.74275900491787	0.0232442243614489	0.933724978781972	0.985581479569838
Merged-chr5-140610502-3	chr5	140609978	140610978	+	855.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3137.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.67292642505215	5.75055366594638	5.87678395125668	5.92836403549144	5.47316014781655	5.60321624166917	-0.152256505930124	0.646938652965007	0.90114476203283
Merged-chr7-127297996-2	chr7	127297496	127298496	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 2 of 30)	intron (NM_001253873, intron 2 of 30)	1736.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	5.5312639043038	5.39018273716151	5.80974917609302	5.67942903460077	5.16439648184409	5.62316563886336	-0.150339799425021	0.682481572904676	0.915096086868746
Merged-chr15-99421360-4	chr15	99420828	99421828	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001884)	TTS (NM_001001884)	28109.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	5.77091433494836	5.97554680659654	5.46381383386874	5.5964014155823	5.85329948045656	5.46466038277147	-0.191300353675462	0.583103923625376	0.873907285988058
Merged-chr9-44268204-4	chr9	44267717	44268717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-30.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	7.37604783128143	7.28775710421968	7.0413703062183	7.25569731746878	6.98369670515123	7.20142294211034	-0.15357177151982	0.541101298169413	0.856717981848775
Merged-chr11-102310207-2	chr11	102309707	102310707	+	886.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302954, exon 9 of 20)	exon (NM_001302954, exon 9 of 20)	7080.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	2.97525515376526	2.8998654842119	3.17792711396014	3.23131551130156	3.17525664020026	3.13474994310835	0.740829709866593	0.262071045187081	0.659940305902207
Merged-chr1-138128057-2	chr1	138127557	138128557	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	47069.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.18858424641552	5.1348271619191	5.28367083923066	5.34683891167567	5.33693362133768	4.75556368434654	-0.0223624531457648	0.954668819181267	0.989617250984245
Merged-chr13-8839355-4	chr13	8838822	8839822	+	964.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	31722.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.67981341853002	4.4957035144144	4.80396704555027	4.57036243671347	4.51686493382426	4.72166465823757	-0.142843722860257	0.733468940282181	0.932101000333582
Merged-chr3-37748169-4	chr3	37747646	37748646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23786.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	5.11239006277878	5.0193675523255	5.47875430975604	4.76268016241833	4.90290720344035	5.20169404987499	-0.522967044720718	0.190541431116855	0.576949468718024
Merged-chr2-27327991-2	chr2	27327491	27328491	+	642.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-80688.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	5.46908916446315	5.59272375767291	5.79932235491319	5.33429103127066	5.09028167881622	5.2573927144792	-0.767952114707001	0.0269885430505673	0.195581143542205
Merged-chr7-100950024-1	chr7	100949524	100950524	+	543.0	f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	14342.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.17758494803464	6.33399043277267	6.43808868023266	6.04265527721381	5.97846086339959	6.1313804444593	-0.454213730273573	0.111234177505065	0.445472081717353
Merged-chr9-123951346-4	chr9	123950829	123951829	+	763.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17363.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.44450274790621	4.96953449838266	5.1632676932819	5.11947306803927	4.96586896034874	5.09220898807527	-0.318648269878459	0.403819754214529	0.779031412271333
Merged-chr19-56757027-2	chr19	56756527	56757527	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34655.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.40666980470433	2.89221226420367	3.32352256181688	3.01111938379822	2.93481213406826	3.28647973042212	-0.613431585895462	0.388013479188675	0.767960457085494
Merged-chr6-120156631-2	chr6	120156131	120157131	+	987.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	BC1_Mm|scRNA|scRNA	-37192.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.04072816069713	5.79088560172063	6.12598264278437	5.9358166118217	5.63029373230522	6.06074482230881	-0.195020695971148	0.545341176520043	0.858059274547204
Merged-chr5-145177868-3	chr5	145177359	145178359	+	759.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	10646.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	6.36594509277467	6.43516056984908	7.00023009688394	6.62491400197858	6.67465510000265	6.88994139424929	0.172657864043341	0.570002424488444	0.869008789930639
Merged-chr16-32434294-4	chr16	32433799	32434799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	3069.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	5.49679927379008	5.46490870970773	5.2889592361688	5.99213964110884	5.64457388729765	5.35432170148864	0.508791520667835	0.155349036982231	0.524967821517179
Merged-chr6-51523990-4	chr6	51523480	51524480	+	967.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	77.0	NM_001127349	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	7.21603913112731	7.61160495620712	7.43109662590644	7.17730451547891	7.21897191031622	6.90668790931025	-0.468630683895728	0.0689631189843517	0.343605323786255
Merged-chr1-186117960-2	chr1	186117460	186118460	+	912.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-650.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	6.05111324011913	6.24007728515478	5.95443006410929	5.9265048323918	6.02902373995961	5.67318478458596	-0.341243943963451	0.271440009321422	0.668778286616632
Merged-chr17-73027300-4	chr17	73026800	73027800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80685.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.41924569849769	6.66125410603224	6.43961311635747	6.09540940919547	6.3920974494139	6.08847076831754	-0.498280094113136	0.0852886721028144	0.38650944002674
Merged-chr16-93883842-4	chr16	93883351	93884351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028083)	promoter-TSS (NM_028083)	-50.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	5.28564360958999	5.07869188120979	5.01189163477917	5.48138110549513	5.55860561734267	4.96140893232165	0.476295202554265	0.219636599018783	0.613911187179781
Merged-chr3-31099529-2	chr3	31099029	31100029	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	4471.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	6.65638857216964	6.90135216334669	6.68819056149566	7.39710455699467	7.64461108507222	7.35451108695922	1.08458130954011	1.75115902482372e-05	0.000650935314586935
Merged-chr9-107597176-2	chr9	107596676	107597676	+	957.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_111986)	TTS (NR_111986)	8226.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	4.89054205215688	4.75770390230817	4.96559804611209	4.91354867316039	5.12337541626545	5.09832705152135	0.395613306906132	0.296593737985589	0.693171366955017
Merged-chr10-121423691-2	chr10	121423191	121424191	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	52559.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.87917276411503	2.93428424689286	2.88148349007769	2.75090284455939	2.63634782079985	2.76997120100503	-0.964984656796651	0.182871831486357	0.565812640996422
Merged-chr8-3481093-2	chr8	3480593	3481593	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029598, intron 4 of 8)	B1_Mur4|SINE|Alu	10231.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	2.52868115783023	2.31287551098531	2.64746412092611	2.52024210061963	2.44062348974522	2.72056431290348	0.359951189673281	0.659486581686395	1
Merged-chr13-113601303-4	chr13	113600804	113601804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17260.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.94844307729882	7.86232836831494	7.49392021090616	7.68438363798033	8.05145357068023	7.63187430256831	0.0297580629983168	0.908573226709305	0.979266532095756
Merged-chr7-19331511-2	chr7	19331018	19332018	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13553.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	2.45622243440396	2.6175863065071	2.82574419079158	2.69056764997377	2.71413001420725	3.12101231125696	1.11771729215269	0.160863296889477	0.533601858778287
Merged-chr17-87023625-4	chr17	87023102	87024102	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008838, intron 2 of 5)	intron (NM_008838, intron 2 of 5)	1799.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	5.07126755583531	4.87574149530633	5.33851845014928	6.00755552990404	6.14136442039875	5.26922494464379	1.46683529933927	0.000249161735436272	0.00599544525222132
Merged-chr11-11679780-1	chr11	11679280	11680280	+	547.0	f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6145.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.45550367402017	3.68679706465837	3.52913688720311	3.36048697525338	3.35209795612618	3.89330644531852	-0.0357637074106986	0.953824744460658	0.989451071374389
Merged-chr6-100272195-4	chr6	100271719	100272719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019743, intron 2 of 4)	intron (NM_019743, intron 2 of 4)	15139.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.71861875723785	4.75324341355629	4.60350548516463	4.46330723752249	4.25079765532299	4.50388668929412	-0.735210392939644	0.0852432009211394	0.386436349653568
Merged-chr18-36792366-3	chr18	36791858	36792858	+	862.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305627, exon 12 of 12)	3' UTR (NM_001305627, exon 12 of 12)	-1565.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	4.52862985383575	4.43329341720796	4.34645218211234	3.99055734230539	4.05964465882289	4.32656680894369	-0.863526270492705	0.0648858425562559	0.332083970194424
Merged-chr15-103272738-4	chr15	103272221	103273221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357748)	promoter-TSS (NM_001357748)	-167.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	6.62817301943612	6.34504330517703	6.29539668184346	6.94728362128568	6.63104393109941	6.4747979714075	0.425541312628284	0.144319464328081	0.507138561079899
Merged-chr7-101455193-1	chr7	101454693	101455693	+	689.0	f0_balb.idr	promoter-TSS (NR_152194)	promoter-TSS (NR_152194)	-869.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.58962386240857	3.04625657541463	3.25891479507095	2.67110157172143	2.67400323979163	3.10215906243911	-2.43636321628702	0.00328692339950108	0.0450648084075937
Merged-chr15-83137708-2	chr15	83137208	83138208	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178627, intron 2 of 8)	intron (NM_178627, intron 2 of 8)	11670.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	3.89587060885952	3.71753810471127	4.45266429833734	4.14287745268193	4.20333398246976	4.09849008404769	0.282927558047525	0.603267509193951	0.882544198306255
Merged-chr6-87552065-3	chr6	87551564	87552564	+	752.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18805.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.40735468332503	5.38818126469652	5.07802889387703	5.50501952846506	5.55687365610513	5.14438903670531	0.227420263770128	0.533502703023599	0.852484319020423
Merged-chr13-102683954-4	chr13	102683450	102684450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9597.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	6.36952621578582	6.38438798643758	6.27061475079161	6.42131710910726	6.81422602180674	6.41066356360505	0.370952796592548	0.194100971836487	0.581296921414137
Merged-chr16-55965467-2	chr16	55964967	55965967	+	609.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024218)	promoter-TSS (NM_024218)	-808.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	2.9163607381081	2.72355309840223	2.73862004385364	2.77604147845689	2.6737519638291	2.87300443755842	-0.135426347313862	0.852793089971326	0.965544656676077
Merged-chr16-30686722-4	chr16	30686271	30687271	+	894.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	87048.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.30992028947154	2.10084529970526	2.15195642996135	2.38794364759846	2.1985393567627	2.427362590297	0.998834351104861	0.261549796748628	1
Merged-chr18-34956286-2	chr18	34955786	34956786	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1935.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	4.61988236531253	4.63827685317514	4.4785302715206	4.85602519502571	4.69004840672399	5.31285178434932	0.868779973283952	0.0465392580744745	0.272956832724387
Merged-chr8-120675830-2	chr8	120675330	120676330	+	732.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	7510.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	2.46672041562931	2.54468952105667	2.66609259597405	2.14333824410919	2.06721102246372	2.55941971781447	-1.62606754403491	0.394745126390895	1
Merged-chr7-19846086-2	chr7	19845586	19846586	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5917.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	3.44778189710402	3.41503372797478	3.59282282018362	3.44959489732711	3.4341196910669	3.61100491768498	0.048716580369219	0.932625969577013	0.985254864630157
Merged-chr16-32666425-4	chr16	32665929	32666929	+	858.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033493, exon 2 of 3)	non-coding (NR_033493, exon 2 of 3)	1768.0	NR_033493	675921.0	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	2.96338830999377	2.74637783240605	3.16765836286965	3.18354385849696	3.26852968061847	3.18277091255699	1.1282643023853	0.105964434376814	0.43451057833757
Merged-chr6-16857235-3	chr6	16856733	16857733	+	952.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41208.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	4.71626049493003	4.53848923976633	4.60621001841999	4.53409743221787	4.18510667420868	4.01618558935227	-0.900529005082489	0.0570943473941142	0.30810729995262
Merged-chr11-117176027-2	chr11	117175527	117176527	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-23634.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.46715170829309	3.38150735447269	3.45291907113263	3.74928800294002	3.59423807749805	3.46801466485683	0.649315478074718	0.259342784071796	0.656906982558477
Merged-chr2-138256640-4	chr2	138256141	138257141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025431)	promoter-TSS (NM_001025431)	57.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	5.15119437794476	5.07086193891685	5.30083634116306	4.88663665425209	4.93961671592331	5.24366356801949	-0.313665851881944	0.403532791795792	0.778882003719199
Merged-chr15-63982763-2	chr15	63982263	63983263	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	15303.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.42316165297822	3.1992071437037	3.37142968746557	3.45323548387276	3.16359064564307	3.44257213861834	0.0822751171951032	0.894760930879451	0.975576532925631
Merged-chr10-71355420-2	chr10	71354920	71355920	+	881.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	B4A|SINE|B4	7657.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	3.53620994566421	3.49888976396451	3.80950270546606	3.55210271205636	3.20667718079311	3.87762360673494	-0.172182153549865	0.785022133408285	0.947850129107983
Merged-chr10-75589281-4	chr10	75588756	75589756	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011820)	promoter-TSS (NM_011820)	-125.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	4.68915766154651	4.92586080563937	5.03063890252063	5.01777957848054	4.60577237702145	5.09443199010423	0.062697392493626	0.880513026436127	0.972540920690587
Merged-chr13-17942556-2	chr13	17942056	17943056	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019491, intron 1 of 4)	intron (NM_019491, intron 1 of 4)	1661.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	2.45694861745495	2.45584316065835	2.70191776153225	2.51888055902275	2.49672900535042	2.52897647397046	-0.138307072498087	0.860509967275293	1
Merged-chr6-54143542-4	chr6	54143037	54144037	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	103605.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.67471825501603	4.39210564855002	4.70869538303307	4.69203421654606	4.76265810314777	4.6968204950114	0.301190496989314	0.469185866802597	0.818913936718213
Merged-chr17-72927188-4	chr17	72926691	72927691	+	821.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	8886.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.92220156612923	5.03208329133933	4.89035901804434	4.46815898394704	4.51102059780709	4.80911351543377	-0.831300406004954	0.0407956327698198	0.251950980898106
Merged-chr8-40862456-5	chr8	40862012	40863012	+	975.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001044740, exon 1 of 12)	5' UTR (NM_001044740, exon 1 of 12)	145.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	3.30135275328558	3.18155818851411	3.3126184236444	4.25710100430121	4.20358110165164	3.80753086962102	3.18556541796614	7.82434993217163e-07	4.38121473187171e-05
Merged-chr8-18946050-4	chr8	18945570	18946570	+	818.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 2 of 6)	intron (NM_176951, intron 2 of 6)	4801.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	4.0198789147854	3.91943801684639	3.77795642156512	3.82237787421515	3.7291734043993	3.56879196058821	-0.638760314088624	0.236385212807983	0.632720263621021
Merged-chr11-115564317-4	chr11	115563848	115564848	+	961.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001002929)	promoter-TSS (NM_001002929)	-96.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	6.17750053272721	6.2259565834128	5.79497535873656	6.25873216378227	6.0140365026161	5.59426793626195	-0.16313288563197	0.634552433430648	0.896350313439852
Merged-chr6-128143689-4	chr6	128143227	128144227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175414)	promoter-TSS (NM_175414)	-149.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	5.15028263395472	5.21471818790704	5.26733395554104	5.52351637661151	5.33565267343802	5.39298871762928	0.417278649878217	0.222588659325041	0.617547053435896
Merged-chr7-5125357-5	chr7	5124899	5125899	+	941.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009028, exon 1 of 1)	exon (NM_009028, exon 1 of 1)	551.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	7.63738947746588	8.00535631077013	7.13295163368604	7.84666488627553	7.74016251493708	7.23095283008547	-0.0168093973378464	0.957578636823992	0.98996830630481
Merged-chr11-110420717-4	chr11	110420212	110421212	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	21610.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.55720462702571	3.50047768218983	3.76086434367278	4.08706743819019	3.96480292563626	3.83162505067142	1.20441155615732	0.0256084716829675	0.189676848121449
Merged-chr6-29269058-2	chr6	29268558	29269558	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3430.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	5.27059792152454	5.06920848188843	5.22455533478689	4.89383418842716	4.71441699472071	4.91596319918969	-0.761017968182639	0.0432631275556443	0.261182262395538
Merged-chr17-74394946-1	chr17	74394446	74395446	+	742.5	f0_balb.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-662.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	4.69543043918382	4.64612413581167	4.53487795457658	4.50488186536678	4.55673133702894	4.47235586576673	-0.284750264795436	0.494602019591503	0.832098209532918
Merged-chr5-64900432-4	chr5	64899933	64900933	+	958.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32266.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.88899233357111	3.79457959106804	4.12933046867823	4.19417873378665	4.05350793809906	4.10573712140299	0.540732573065982	0.277911823982091	0.675187218602056
Merged-chr11-98862944-2	chr11	98862444	98863444	+	693.833313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-654.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	4.5215255915787	4.16873479198657	4.61663426210242	4.4327483703661	4.51846570768755	4.43903054042329	0.0627072773868892	0.889874432341127	0.974313026039223
Merged-chr14-70064990-2	chr14	70064490	70065490	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12455.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.63508860557505	3.71229778224399	3.73615669585802	3.86592240949669	3.60580166376308	3.53427472620061	-0.0497923462189403	0.928412438182406	0.983802612059568
Merged-chr11-34028602-2	chr11	34028102	34029102	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18326.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.18895933528193	4.10793033751912	4.47836779505544	4.14192349669091	4.03129775169292	4.46605049917514	-0.119689110106623	0.807589321665305	0.954557080558103
Merged-chr3-137955682-4	chr3	137955194	137956194	+	987.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	MIR|SINE|MIR	25855.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.40702746639556	6.12031969006964	6.08640301420933	6.42243569222263	6.46571280676424	5.8171755855523	0.106318454630847	0.746417522267865	0.936300236930265
Merged-chr15-5708650-4	chr15	5708146	5709146	+	928.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212328.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	4.29213846072975	4.3770503332994	4.43912479780904	4.73873041771722	4.48213262838601	4.58983384359498	0.596790740616646	0.16667586934017	0.54219342961245
Merged-chr11-102467240-4	chr11	102466736	102467736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010575, intron 4 of 29)	CpG	2647.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	3.7324067460753	3.59059620276049	3.70689148774203	3.91746388214983	3.64549479176896	3.67076782345679	0.24611606044932	0.652001852352771	0.902896807825606
Merged-chr12-39039950-4	chr12	39039440	39040440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	256229.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.2381377295047	4.07266965222675	4.13945850432262	4.02502495095994	3.83046662164533	4.33731101081608	-0.239345640721747	0.636277966573314	0.8970753299382
Merged-chr2-181693811-6	chr2	181693287	181694287	+	918.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291208)	promoter-TSS (NM_001291208)	23.0	NM_001291206	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	7.5289698959514	7.3965187709875	7.5112465496273	7.61174531334537	7.52632661419646	7.58749116060395	0.139629608826798	0.528802168222269	0.850585575598857
Merged-chr16-91475926-3	chr16	91475435	91476435	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-9280.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	7.1465779596818	6.77339028636424	6.42230799335398	4.61131361962114	4.24093389570856	4.72181182691813	-4.84990734399953	3.05718512353969e-27	8.77180206067208e-24
Merged-chr8-71275437-2	chr8	71274937	71275937	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	2723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	3.05431442352018	3.20996806795922	3.31788715884951	3.15202677879613	3.16393284237613	3.3343253371349	0.0878080473786807	0.890349587898244	0.974513293810689
Merged-chr9-120043328-4	chr9	120042823	120043823	+	986.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19725.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	4.42264756350257	3.74180348700586	4.33851474534843	3.61403392562887	3.65806798376048	3.70102753137338	-1.68443627658864	0.00351376438727557	0.0473060664160662
Merged-chr16-31934641-2	chr16	31934141	31935141	+	966.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	790.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	7.49821904764158	7.63878754951575	7.43365490158712	8.00495170464454	8.20437939959465	7.78195256456638	0.697714037250685	0.00330198062899892	0.0451967764727327
Merged-chr10-78244156-4	chr10	78243675	78244675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081055, intron 1 of 22)	CpG	467.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	6.98711440997045	6.67748186060763	6.73580196963302	6.72477757661637	6.60896549208679	6.57911691078576	-0.267162424043551	0.310588630347307	0.705960229701671
Merged-chr11-83753741-4	chr11	83753230	83754230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145432)	promoter-TSS (NM_145432)	93.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	5.77997221250808	5.76646672552699	5.78975432953871	5.93492963012173	5.60586230203383	5.51980776124254	-0.135640451947625	0.674609754391949	0.911852710156386
Merged-chr10-62792370-4	chr10	62791859	62792859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	9.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	7.87243042191059	7.89719354312647	7.53997446613247	7.9800473868361	7.85054066469011	7.43554986399683	-0.0041103426362134	0.987377877716205	0.997218304929226
Merged-chr9-25570522-4	chr9	25570023	25571023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88926.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.64385348837719	6.6790852792937	6.28182983570892	6.58316534081256	6.4747339805994	6.16628620146327	-0.207155623666283	0.481223035238646	0.824970771084682
Merged-chr6-148830796-2	chr6	148830296	148831296	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081113, intron 1 of 24)	intron (NM_001081113, intron 1 of 24)	671.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	3.53103782078144	3.50129166945608	3.69730282785888	3.59749316480847	4.04124415840078	3.81823490402882	0.887078318658684	0.115567112279623	0.453868328624293
Merged-chr17-78402068-4	chr17	78401567	78402567	+	878.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	intron (NM_001360407, intron 4 of 9)	16085.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.20436898674444	5.28362813522461	4.94083388773637	5.00560479280972	4.91145299033438	4.89171863676104	-0.475070261292557	0.206490994924057	0.597141275948059
Merged-chr14-20392912-2	chr14	20392412	20393412	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025440, intron 1 of 2)	intron (NM_025440, intron 1 of 2)	578.0	NR_155747	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	5.11265460531589	5.14647111317462	5.70774297801667	5.22417774321939	5.58015559289026	5.48560089664263	0.201903479150373	0.600370255891673	0.881642163217577
Merged-chr3-95661017-3	chr3	95660506	95661506	+	928.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	2285.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.61046665041327	7.63034959045516	7.25864787613699	7.98827600132836	8.24056385136192	7.66457535417708	0.683697235621608	0.00963561011728457	0.0979812632540663
Merged-chr18-23911668-2	chr18	23911168	23912168	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43020.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.3591687316226	4.58017596783336	4.44474313835682	4.61267854160068	4.52491490253424	4.86029834331441	0.479425285823294	0.267362848269546	0.664656803764822
Merged-chr15-91178833-4	chr15	91178337	91179337	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 4 of 9)	intron (NM_011994, intron 4 of 9)	13170.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.37076819866013	6.65114049232401	6.41782844682891	6.81260153091207	6.70079688768419	6.13681061240705	0.167655562508216	0.588898551373032	0.876650937479947
Merged-chr14-65358943-2	chr14	65358443	65359443	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	CpG	267.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.82978290860166	4.66332129340076	4.5801999999559	4.93186038948111	4.54664104177408	5.12069203439252	0.400661878022028	0.353664191945243	0.740897053888057
Merged-chr9-24510674-4	chr9	24510175	24511175	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7535.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	5.03793113056708	5.01802811316251	4.95041888554162	5.04891465094845	4.88849668882148	5.01549942899226	-0.0528516960798023	0.886634817382594	0.973794308941933
Merged-chr1-13648069-4	chr1	13647614	13648614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 2 of 6)	intron (NM_145381, intron 2 of 6)	12395.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	4.79345352626427	4.72393685163454	4.88535712084752	4.49378801712596	4.36099787401321	4.65489992010393	-0.722837203526968	0.0826390410935765	0.380301384398778
Merged-chr6-55056237-3	chr6	55055725	55056725	+	885.211121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_180678, intron 7 of 16)	MER3|DNA|hAT-Charlie	18224.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	3.97306350588547	3.63600872875741	4.05508043487287	5.47673935265134	5.55510630242857	5.28651008308949	4.19603235595803	2.87249473552197e-15	8.27039937554713e-13
Merged-chr6-127254146-4	chr6	127253643	127254643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53824.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	5.24881291061129	4.82351165072706	5.03787144333809	5.26794755923489	4.87625375710158	4.8811805760977	-0.0561903922604131	0.889221074253495	0.974207858658472
Merged-chr7-130519611-4	chr7	130519089	130520089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136054)	promoter-TSS (NM_001136054)	-9.0	NM_013799	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	7.92215872988304	8.43457029197825	8.10284583194414	8.11111846979809	8.22357331498658	8.02203333393702	-0.0708560457001529	0.76945797411215	0.943125565788486
Merged-chr1-131252763-4	chr1	131252336	131253336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7658.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	5.8995260249004	5.44095596676542	5.8125111118506	6.19310682465832	6.23584564291317	6.3823274431345	0.937011826568165	0.00300916869511226	0.0422237620207253
Merged-chr13-44718442-4	chr13	44717948	44718948	+	923.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12326.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.43681643292281	3.76724262115923	3.71796673488137	4.00918316192602	4.06357953506691	3.78938327972139	1.0211668321988	0.0644367075211131	0.330904743530012
Merged-chr12-3667026-4	chr12	3666504	3667504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	L1M4|LINE|L1	94020.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	6.18554795304169	6.37221260063315	6.06955585766862	6.1274152548241	6.03758814287123	6.29769789693784	-0.123290496010417	0.672823171868804	0.910966428144718
Merged-chr15-58214995-4	chr15	58214482	58215482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-90.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	7.98429083595018	8.1664158708794	7.85503224197727	7.8613107808294	8.06233522982454	7.6626199678824	-0.188293527171352	0.42954108248089	0.795784671795164
Merged-chr4-43546219-2	chr4	43545681	43546681	+	594.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 20 of 56)	intron (NM_011602, intron 20 of 56)	16402.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	2.87287150343618	3.09511570411412	3.11060141491891	3.04682570480294	2.72040964442206	3.23745857749183	-0.0679459884301327	0.925586173434289	0.983230173300268
Merged-chr3-69264373-2	chr3	69263878	69264878	+	946.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	41959.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.34633103912511	3.34306022938515	3.29400409036799	3.62233956156518	3.36291958940675	3.36682517038703	0.487663045418286	0.417217603524883	0.787850452843557
Merged-chr8-111224311-2	chr8	111223811	111224811	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	34891.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	4.58028043302176	4.59907130391382	4.65235910169995	4.90241139944445	4.60805829756035	4.79605557783678	0.377661437338011	0.355527035939721	0.74245490954367
Merged-chr17-51812603-2	chr17	51812103	51813103	+	593.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163630)	promoter-TSS (NM_001163630)	-419.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	4.09318876784289	3.96855339940808	3.89169518302821	4.49071199234627	3.83305519224906	4.42665437275736	0.804223964654529	0.13429586464818	0.489993860307513
Merged-chr6-38950038-4	chr6	38949544	38950544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31058.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	8.13200715047924	7.90205906708357	7.95944098671504	7.92091293458795	8.33704672370807	7.8556740579957	0.0881341405906039	0.719892181879345	0.927960661644538
Merged-chr4-144904170-4	chr4	144903650	144904650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	11013.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.76171274954722	6.89236992293915	6.81335484963503	6.77467750131557	6.91406479261129	6.66624795469502	-0.0424187013202806	0.867138793896215	0.969304239091486
Merged-chr11-101952931-4	chr11	101952419	101953419	+	992.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045806, intron 1 of 3)	intron (NR_045806, intron 1 of 3)	498.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	5.76044054452856	5.47533853706372	5.73216478381248	5.4873085439128	5.57412959379033	5.66485397645174	-0.156595408793617	0.631508331124767	0.895186378238635
Merged-chr19-4927471-2	chr19	4926971	4927971	+	758.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133803, intron 1 of 17)	intron (NM_133803, intron 1 of 17)	499.0	NM_001360711	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	3.79805403735862	3.9074820961478	4.12244355964981	4.24483946115407	3.83895300462573	4.19015379009887	0.456840688672374	0.379465289979223	0.761896589033286
Merged-chr11-11684853-3	chr11	11684317	11685317	+	854.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1108.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.31012884223363	4.34142658942976	4.00903098696776	4.13939296193508	3.75204195705659	4.22277710717916	-0.538947633194529	0.297813749542207	0.694617700684176
Merged-chr4-155094171-7	chr4	155093664	155094664	+	910.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	7560.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.86298502505844	4.79920405925359	5.15977570138257	5.07893756477361	5.01770175436602	5.12726190188272	0.289177958975893	0.446850817120162	0.806122541261987
Merged-chr19-17253012-3	chr19	17252503	17253503	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86502.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.13496530845662	4.27760649325947	4.56381111772441	5.74035612324558	5.91101382694142	5.44339372212266	3.13649303186916	9.82167842291314e-14	2.26116324247195e-11
Merged-chr17-34283146-3	chr17	34282624	34283624	+	853.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 4 of 4)	intron (NM_010378, intron 4 of 4)	4647.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.54767351558433	2.58127688098776	2.51884803499928	2.77608687255908	2.86971350284165	2.78430952443323	1.49244796906045	0.0517681648906075	1
Merged-chr10-123077366-2	chr10	123076866	123077866	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153395)	promoter-TSS (NM_153395)	-861.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	2.93581505892834	2.98487199262834	2.91134121102511	2.78152582951661	2.72308208646369	2.73590987222743	-1.03685146058862	0.147818562879412	0.513099278826115
Merged-chr7-126554968-2	chr7	126554468	126555468	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 15 of 20)	B3|SINE|B2	11398.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	4.11730200944536	3.81895648812974	3.90700822753657	4.07431151271467	4.00877770442424	3.97699202978638	0.194087717660318	0.699912024534016	0.920753377048759
Merged-chr11-78345975-4	chr11	78345475	78346475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	391.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	6.43556159748335	6.53404911280997	6.56111212938377	6.67251424689938	6.81321175689326	6.60317957568128	0.313972218755962	0.22701331598572	0.622066543880371
Merged-chr12-70714398-7	chr12	70713876	70714876	+	893.7261960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111138.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	6.47164098521048	6.94041658623271	6.71593531804377	6.28850400788086	6.46535386489841	6.43619794180631	-0.521754476343684	0.0664371215299559	0.336712852310684
Merged-chr12-112589558-2	chr12	112589058	112590058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	774.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	5.28603994194358	5.31226310374939	5.35930594745507	5.33278547242881	5.3675020748353	4.89510765180694	-0.173688108813468	0.638120989243371	0.897380718500389
Merged-chr7-80059341-4	chr7	80058774	80059774	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	15983.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	6.02609368430784	5.67391676260754	6.0407302130426	5.6768104533964	5.47445561551104	5.58780439084907	-0.618874583346427	0.0580192644266363	0.311221438525757
Merged-chr16-35902544-4	chr16	35902054	35903054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31172.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	7.74688149260592	7.87989749895495	7.46156203747228	8.19579293575563	8.41261220999897	7.9537994752117	0.698954160960241	0.00527237872943828	0.063493853400392
Merged-chr18-23833520-2	chr18	23833020	23834020	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	29550.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.01271873442726	2.99167030881651	3.05616315807148	3.00850622312352	2.98074583521008	3.06966099711124	-0.00573860941128455	0.993055136987186	0.998646946749805
Merged-chr3-52087716-2	chr3	52087216	52088216	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	17290.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.18920976405194	5.44692437668745	5.26788179684364	4.86240808338268	5.12005884914387	4.99430460760535	-0.639901220527846	0.0842766969931548	0.38412003743462
Merged-chr15-53343348-4	chr15	53342857	53343857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2826.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.61626697921785	6.36340533536039	6.13481634540998	6.29641160944528	6.22965761946783	6.0324871413512	-0.33003887666016	0.270139340257557	0.667139350599521
Merged-chr6-136964796-4	chr6	136964226	136965226	+	982.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10203.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	4.4953348131476	4.49266009865652	4.57515970788463	5.05538666703217	5.19989876232224	4.80865367849623	1.20105942438237	0.00293373068156015	0.0414307302361264
Merged-chr9-114763544-2	chr9	114763044	114764044	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	18449.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	2.54839127178728	2.53977294842257	2.66541316259967	2.67344362263201	2.40516665141481	2.48399184771798	-0.341532123633766	0.666257616128504	1
Merged-chr6-85069455-4	chr6	85068950	85069950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177077)	promoter-TSS (NM_177077)	63.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	5.13862648612557	5.09759526643812	5.24137972123624	5.03211313765425	4.95250058551242	4.81272823363824	-0.456701688091032	0.217649579991613	0.611645289860174
Merged-chr17-35240632-4	chr17	35240145	35241145	+	852.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1101.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	6.96761403258481	6.64322616696588	6.52058736820196	6.66633677433752	6.93383791494799	6.59816911907293	0.0273883464784291	0.923170627473704	0.982693984177635
Merged-chr3-104817070-2	chr3	104816570	104817570	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163440, intron 2 of 20)	intron (NM_001163440, intron 2 of 20)	1235.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	3.41759748645346	3.5114954345212	3.4298692031045	3.62982309302763	3.38861630522017	3.55590598590876	0.256096390012143	0.658896019600664	0.905113169216186
Merged-chr5-123257732-2	chr5	123257232	123258232	+	933.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29542.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	4.24028474103374	4.29080832174778	4.00484632208407	3.95369626638643	3.84236566560203	3.97380875025544	-0.802886592262461	0.104855298563664	0.432054705729044
Merged-chr11-104003664-4	chr11	104003179	104004179	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	36808.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.14370192012966	6.31802903945999	6.06630650634302	6.01249309455555	6.02539781581566	5.88833193758538	-0.350323662966908	0.229542374955464	0.62517632598914
Merged-chr10-128091655-4	chr10	128091192	128092192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	7.52555279398036	7.00420795752561	7.23512787514291	7.79340033511612	8.08410180937377	7.92098235255245	0.965264727000439	0.000186898629028361	0.00473408253400056
Merged-chr1-36563140-2	chr1	36562640	36563640	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001126046, intron 14 of 14)	intron (NM_001126046, intron 14 of 14)	-4759.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	2.80693563384389	2.63243120104951	2.71136779396757	2.70391337969996	2.58620088692269	3.07615641487562	0.412912778941324	0.591901734133566	0.87780418653262
Merged-chr9-118623606-3	chr9	118623083	118624083	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	Lx8|LINE|L1	16874.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.97236291928707	4.94235337989471	5.08083316747233	4.76687463842423	5.0544831393262	4.74103154956619	-0.262695236585548	0.502836994123422	0.836691193058519
Merged-chr12-102173886-3	chr12	102173401	102174401	+	927.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172152, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	45174.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	4.411567258594	4.1285683455703	4.66108187165054	3.96523403047725	3.5470814095106	4.08077105055008	-1.55244354996048	0.00493956735880942	0.0607555832656045
Merged-chr17-34256939-2	chr17	34256444	34257444	+	769.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6283.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	3.83763472168752	3.69609873202476	3.86863938786499	3.81422664238726	3.81655870122864	3.73366573540691	-0.0252364251656393	0.961551913359892	0.990648883228567
Merged-chr1-74376470-8	chr1	74375928	74376928	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013612, intron 2 of 14)	intron (NM_013612, intron 2 of 14)	1225.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	8.2107709123959	8.49815601570617	8.17486016068976	8.18640345950838	8.39381725023695	7.98440572452121	-0.14118179561732	0.551193683708264	0.861024209682803
Merged-chr4-134748933-2	chr4	134748433	134749433	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 7 of 8)	intron (NM_145554, intron 7 of 8)	19071.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	3.6239870244356	3.65276566185512	3.53617283090577	3.8260033151829	3.62962944842006	3.49314398716872	0.178806530462836	0.751004289106942	0.937718261890661
Merged-chr1-170286179-1	chr1	170285679	170286679	+	655.0	f0_balb.idr	non-coding (NR_153837, exon 3 of 3)	non-coding (NR_153837, exon 3 of 3)	8861.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	2.23207665537314	2.09175776863113	2.18342046307596	2.32743474739868	2.43893839800925	2.51983442370215	1.83343586010202	0.0410805560624081	1
Merged-chr2-35109524-4	chr2	35109023	35110023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	31.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	8.10932096812911	7.98682125228735	7.82559727898058	7.95234160894632	8.03657340067234	7.88988681637104	-0.0284301905755183	0.89693892408696	0.97587199430405
Merged-chr10-40489249-3	chr10	40488738	40489738	+	865.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81124.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	5.40763402266498	5.78807582816149	5.13546809482939	5.24071266018378	5.25605385419244	5.09127226131287	-0.555673360831023	0.144318588262632	0.507138561079899
Merged-chr12-35553390-4	chr12	35552958	35553958	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18469.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	6.05183325631345	6.35925142054995	6.31110896078968	5.89368918461339	5.88735123707007	5.79385871809027	-0.659292465764718	0.0269780500574146	0.19557151161254
Merged-chr4-130789938-4	chr4	130789425	130790425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2612.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	7.09344724998021	6.72236816539659	7.26513491855536	6.9651851336683	7.04920751532068	6.83617612586405	-0.123632578276697	0.651412655793953	0.902807293102755
Merged-chr8-70507938-2	chr8	70507369	70508369	+	861.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348229)	TTS (NM_001348229)	-1117.0	NM_025577	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	3.00040173018441	2.92224189210232	3.29349876470604	2.89048567941716	3.13585702017592	3.0301733863947	-0.220671223848287	0.750454992245644	0.937550343416037
Merged-chr18-63681348-2	chr18	63680848	63681848	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 2 of 7)	intron (NM_016792, intron 2 of 7)	11011.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	3.16737271041234	3.42800533866425	3.36380750383792	3.38504056184301	3.7021353613289	3.3785176444805	0.684352746935242	0.270749301500651	0.667808148192268
Merged-chr11-64979482-2	chr11	64978982	64979982	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023479, intron 1 of 24)	intron (NM_023479, intron 1 of 24)	447.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	5.10647591058524	5.21630435249094	5.40489347741177	5.42366458402192	5.3341918883035	5.25300820033231	0.205340619930106	0.557391483208559	0.864207623582794
Merged-chr9-65580227-4	chr9	65579722	65580722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153119)	promoter-TSS (NM_153119)	-135.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.61526098836916	7.31083031619226	7.18295528899189	7.53377082380838	7.86713994761941	7.36128967401	0.328772246325223	0.22183937024045	0.61671749095216
Merged-chr13-115152465-2	chr13	115151965	115152965	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-50501.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.82720636504085	2.83837350668412	2.89088898474638	2.80597490109859	2.78030990481795	2.78015149021674	-0.317216977408102	0.652743463215068	0.903005353518697
Merged-chr4-63207023-2	chr4	63206511	63207511	+	998.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8401.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	4.01325465722378	3.89040242180735	4.21097036135684	4.35507615482677	4.03535722068999	4.36385411851979	0.611669869994134	0.215903955089976	0.609290700190835
Merged-chr14-31336568-4	chr14	31336041	31337041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360187)	promoter-TSS (NM_001360187)	-97.0	NM_001360187	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	7.68198657590974	7.60158058055678	7.51621651461309	7.61444900629976	7.59750850773327	7.41590932757986	-0.0791420864866329	0.72572394001551	0.929707128236285
Merged-chr7-45155099-4	chr7	45154614	45155614	+	999.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285904)	promoter-TSS (NM_001285904)	-576.0	NM_145954	69748.0	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	6.41160054219758	6.43456522883101	6.39941232473854	5.91336387195897	6.16626279039702	5.95126783849786	-0.655064025574203	0.0215727587619694	0.169870929409099
Merged-chr12-111695045-2	chr12	111694545	111695545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16940.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	6.05528897990037	6.2346434767677	6.41705582784252	6.38089032385605	6.23315284925533	6.20674302823811	0.0693232520998321	0.809556259874858	0.954749848816598
Merged-chr17-5260021-4	chr17	5259537	5260537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 5 of 19)	L1MD3|LINE|L1	158730.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.05222996170616	4.99322655446344	4.73934403096078	5.48875943035639	5.39761339021508	5.01207025737142	0.783104836038958	0.043963148269028	0.263786377325404
Merged-chr18-60843945-4	chr18	60843443	60844443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	5021.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	6.39171493357351	5.97594680678657	6.17703437939925	6.48720913454469	6.30791986973924	6.31935591575712	0.298726909394989	0.309096772036587	0.704802606494279
Merged-chr2-167922051-4	chr2	167921560	167922560	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10267.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.90326462350503	4.61310308839764	5.12589617735806	4.42437709984163	4.05081150972987	4.4381394542791	-1.43321114076552	0.00203915799981321	0.0314444512321085
Merged-chr1-193198550-2	chr1	193198050	193199050	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	2996.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	2.43434923028041	2.50131781630426	2.53344381848546	2.53260704550271	2.58675697444695	2.66923577197955	0.62945162839574	0.416401099826253	1
Merged-chr2-148681055-4	chr2	148680547	148681547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028986)	promoter-TSS (NM_028986)	-73.0	NM_001355689	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	8.16958600874716	8.1798429689997	7.74118398250367	8.19649509574727	8.4332206193673	8.1258191871807	0.294766818576374	0.224645970010779	0.619546646536638
Merged-chr4-155488921-4	chr4	155488428	155489428	+	964.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	6.40904200653641	7.08363030657241	7.12412879544588	6.75332633434593	7.14657877378117	7.09699540800464	0.155364760065753	0.619121754845137	0.889657217918386
Merged-chr17-32965818-4	chr17	32965311	32966311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	-20.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	7.15927859819423	7.67009997244615	7.32670653332626	7.55359311794089	7.68725929764591	7.08303545704206	0.100287419711634	0.726537678096143	0.92988597672774
Merged-chr8-110971473-3	chr8	110970929	110971929	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	26394.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	3.87087504486884	3.73030494553656	3.7823593608831	3.41115031085151	3.40002783809593	3.4803506764082	-1.32530525923743	0.0195341564357703	0.158877457352429
Merged-chr7-105811138-4	chr7	105810640	105811640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025301)	promoter-TSS (NM_025301)	-53.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	7.55032705567394	7.93213610350901	7.58900831889255	7.66866439804488	7.76929209684035	7.53684798380098	-0.0589835294859532	0.807963762964749	0.954583809755663
Merged-chr19-6300548-3	chr19	6300058	6301058	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010119)	TTS (NM_010119)	-5899.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	7.17524903488276	6.87707433333592	7.18006818618982	6.91269203487647	6.70471115924092	6.76877716802913	-0.439386095381104	0.0889397054260609	0.396044900411628
Merged-chr8-82918149-3	chr8	82917649	82918649	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54793.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.37444627870418	5.42052798633882	5.35079708972118	4.02227770970158	3.70008997468317	4.14677022012496	-3.95538284761898	3.91808710300901e-14	9.56059213100217e-12
Merged-chr2-128792250-2	chr2	128791750	128792750	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 16 of 18)	intron (NM_008587, intron 16 of 18)	-26053.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.42512264595465	3.46304733021291	4.06674383218374	3.63163459658211	3.60965619226745	3.9616694726284	0.201242072295309	0.743341436200547	0.935605654651789
Merged-chr8-71534484-2	chr8	71533984	71534984	+	720.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198095, intron 4 of 4)	intron (NM_198095, intron 4 of 4)	2953.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	3.12651708310138	2.7922502789594	2.95881320258195	3.03240112419938	3.02687006672726	3.36903364167316	0.798639300444778	0.257032479335236	0.654281648939255
Merged-chr17-34931241-4	chr17	34930741	34931741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-12.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	8.04095109855523	8.18961951835998	7.6230098826162	7.71448639895335	8.08257686331419	7.71763542618005	-0.176849615228615	0.502051396295243	0.836246473484829
Merged-chr2-26941697-4	chr2	26941193	26942193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198628, intron 5 of 18)	intron (NM_198628, intron 5 of 18)	7624.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	6.83477747055294	6.87411980098617	6.61408389388423	6.46499903966811	6.57017137643861	6.55200926298043	-0.405584946216782	0.119172663782216	0.461563656264862
Merged-chr16-18877125-4	chr16	18876614	18877614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	364.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	5.90204246848538	6.00001386862408	6.29904987181716	6.21343594168127	6.11851404767131	6.09592722956913	0.133398928763797	0.654192675676675	0.903708984834566
Merged-chr11-75279162-2	chr11	75278662	75279662	+	564.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69221.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	4.16505126305911	4.36775436436837	4.00762811259243	4.003396640116	4.13011254136296	4.07759320293429	-0.350067428409604	0.473518087565337	0.82090428702971
Merged-chr17-31064296-2	chr17	31063796	31064796	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	6602.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.01662721030219	4.74550763158459	4.92978121700954	4.94192278395417	4.62646048641087	4.77064682861015	-0.266962987647176	0.507038855126397	0.838794565536546
Merged-chr15-79324292-2	chr15	79323759	79324759	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4112.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	5.46165963967901	5.49874144685084	5.33061963744617	5.38824606592809	5.63800117998796	5.62746817069086	0.227042618307603	0.496012832150986	0.832857143328003
Merged-chr19-12010506-4	chr19	12010000	12011000	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26240.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	7.22331905382287	7.23958207351829	7.16055781455559	7.26434364057369	7.50703980631466	7.03392352341057	0.126212193050547	0.617618711942464	0.888822321093559
Merged-chr7-80652467-4	chr7	80651943	80652943	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	16426.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	5.03637357537015	5.37394677586906	5.69554349064014	5.34338551194705	5.38402203157532	5.82621263988358	0.271170050089615	0.486698674407373	0.827985697457807
Merged-chr4-140965348-2	chr4	140964848	140965848	+	871.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B1_Mur3|SINE|Alu	4077.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	7.03730837727468	7.14063614854577	7.11645170771161	7.16368722931266	7.7494472258346	7.1094727386221	0.43168344325057	0.125771942702073	0.474437113587777
Merged-chr11-69632786-4	chr11	69632295	69633295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-176.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	7.64476467732635	6.77283681054649	7.21656508443918	7.58313540111435	7.0189391907075	6.7335501923611	-0.144999752739186	0.679579284102002	0.913926664382454
Merged-chr15-50857132-2	chr15	50856632	50857632	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	31917.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.58394881322601	2.62396636316295	2.8018177047405	2.72956618013784	2.91833847287434	3.04810263854741	1.22834135276027	0.100636262487252	0.423170146377512
Merged-chr7-16263554-10	chr7	16263068	16264068	+	896.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4028.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	4.4186281511349	3.99172030063476	4.28303419483633	4.17721319970815	4.13388008476287	4.12081548629915	-0.270647361666774	0.577033730906812	0.871930699660138
Merged-chr8-46781290-3	chr8	46780794	46781794	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	41549.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	3.73565787334429	3.70064923467158	3.94247340930914	4.26269240576393	4.07994099074939	4.06062546742405	1.06676616481654	0.0354706953725178	0.231213914653855
Merged-chr7-35041596-2	chr7	35041096	35042096	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 13 of 14)	intron (NM_008820, intron 13 of 14)	14970.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.59712634191771	3.47932233848456	3.90132108680845	3.43479173074639	3.42894117104413	3.68600040158541	-0.520205627092912	0.376296531746794	0.759143697747295
Merged-chr2-180582681-4	chr2	180582157	180583157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151482, exon 2 of 5)	non-coding (NR_151482, exon 2 of 5)	1435.0	NR_151482	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	6.45195857368894	6.60143428251185	6.50998328010758	6.41478926889198	6.37880287425545	6.76098334715836	-0.00796681376699618	0.977114838798059	0.994771164142869
Merged-chr9-120935242-4	chr9	120934742	120935742	+	948.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	1664.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	6.99161343681081	7.39700238580811	6.88616595544526	6.98466758093667	7.04797726749665	6.67065740860178	-0.303267716148914	0.283671452668028	0.681376161050487
Merged-chr2-166715949-2	chr2	166715449	166716449	+	591.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2117.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.11757279874338	3.00694977360158	3.04497655233762	3.17760864328656	2.89371555352336	3.23273477619232	0.203368483155918	0.762778615643943	0.941663714620562
Merged-chr3-137853463-4	chr3	137852974	137853974	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-11013.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	5.59874940238459	5.06993055448796	5.28650633075428	5.45751088802243	5.85711645063184	5.56419174781083	0.579528729509882	0.118160760965707	0.459156615067228
Merged-chr1-37639320-4	chr1	37638809	37639809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	80502.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	5.82090738739298	6.09697617132576	5.49272633756875	5.19966867872043	5.29929595939351	5.49649384285567	-0.953515516620677	0.00729542826716597	0.0805624413078097
Merged-chr15-59654657-4	chr15	59654155	59655155	+	965.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144549, exon 3 of 3)	exon (NM_144549, exon 3 of 3)	6001.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.23487609639978	3.72863545270101	3.6985925775839	4.04172425263357	3.71223564593462	3.65664759012672	-0.313907681846465	0.589135601266517	0.876753289776615
Merged-chr13-81400907-4	chr13	81400407	81401407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 77 of 89)	intron (NM_054053, intron 77 of 89)	232237.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	4.49081689568067	4.5359509257652	4.31199195354129	4.50476757876775	4.22209489469521	4.51154062416491	-0.115381099228387	0.796913295459208	0.951572880317229
Merged-chr7-73595389-4	chr7	73594903	73595903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37008.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	7.61722916966411	7.59601162129086	7.49153867526098	7.52971152109358	7.90961087653767	7.55853628273142	0.165462560094847	0.491030018765803	0.830342687115936
Merged-chr7-24902091-4	chr7	24901584	24902584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	-902.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	5.15417519487059	5.19851466623381	5.39832431778531	5.40937703788066	5.27422406367793	4.91787206430074	-0.0411880680712061	0.912357730938325	0.980351280084664
Merged-chr11-83714178-4	chr11	83713688	83714688	+	988.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B2|LTR|ERVK	5184.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	4.32079702617773	4.2289757986808	3.93609927932261	3.93602081864133	3.58475880757303	4.15168274221731	-0.812767926160768	0.13818960842253	0.496910928502821
Merged-chr13-60719234-2	chr13	60718734	60719734	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 7 of 26)	B4A|SINE|B4	67130.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.22443392759641	2.98664695709698	3.45649625615164	3.08743267628312	2.96189284869289	3.37288788182456	-0.356196384644401	0.604644145380374	0.88314896167691
Merged-chr8-104534972-4	chr8	104534441	104535441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144931)	promoter-TSS (NM_144931)	241.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	7.19619174689122	7.38353448985464	7.0950628058529	7.21958626771054	7.09679151033912	6.75586449149602	-0.282978948461177	0.282752234237709	0.680686491912143
Merged-chr10-26322865-4	chr10	26322367	26323367	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359255, intron 12 of 21)	intron (NM_001359255, intron 12 of 21)	51205.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	5.19704648243129	5.39453381547377	5.08120970783066	5.07770929983894	5.43065804169914	5.14650193241967	-0.000901080605055825	0.998066231127918	0.999579683478894
Merged-chr4-134513016-3	chr4	134512514	134513514	+	897.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081099, intron 1 of 2)	MURVY-LTR|LTR|ERV1	2015.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	1.56283424827828	1.59672716097491	1.70994360476041	2.0165711467731	1.75421031637619	1.99920533591308	3.51618684405408	0.00621097188190317	1
Merged-chr13-20185307-4	chr13	20184789	20185789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94782.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.871008681445	6.98969206920918	6.99046448963311	6.81809565296068	7.19701127973413	7.00823491004501	0.111502192965941	0.663032749150226	0.906977526653712
Merged-chr2-154791874-4	chr2	154791396	154792396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139513, intron 1 of 8)	CpG	786.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	7.51058014001006	7.79556318124846	7.52453498534442	7.32235112926657	7.19362847049031	7.53267120225224	-0.397772335741778	0.104737725782901	0.431848334364925
Merged-chr7-90146510-4	chr7	90146008	90147008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16295.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.88696627467005	7.09795080082	6.59032952477457	6.92593675843693	7.11207857766892	6.49935682484593	-0.00161039885630384	0.995742586100757	0.998961028701257
Merged-chr13-100490632-4	chr13	100490119	100491119	+	814.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360706, intron 1 of 16)	intron (NM_001360706, intron 1 of 16)	1775.0	NR_153794	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	2.71791118948814	2.77739921191481	2.66305381523409	2.83299584374935	3.03271226541416	3.1027039036159	1.35668799002331	0.0643536652210294	0.330624167971583
Merged-chr15-63985910-4	chr15	63985461	63986461	+	840.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	12105.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.39833825909927	4.36680298265124	4.27381022060555	4.441535259285	4.27659308947259	4.4730550322367	0.109042065618493	0.805749960528799	0.953967596978946
Merged-chr15-9118756-4	chr15	9118272	9119272	+	963.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 7 of 9)	L2|LINE|L2	21682.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	4.24808762400311	4.1242743794416	3.80976098299202	3.83062613995695	3.80292646187326	3.7141630708132	-0.908610313727077	0.0868820843925135	0.390564148210184
Merged-chr6-97814403-4	chr6	97813903	97814903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	7345.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.53384172868096	6.316412618124	6.42372342098832	6.61929759279482	6.88464750017128	6.95373183369117	0.630851131526204	0.0195757671508498	0.159115017396494
Merged-chr11-58902728-1	chr11	58902228	58903228	+	555.0	f1_balb.idr	intron (NM_011758, intron 2 of 4)	L1M4b|LINE|L1	1497.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	2.28200432686769	2.21105619487998	2.35113154899641	2.08249695975543	2.04728837610072	2.16576725635998	-1.3953598960668	0.124216194304683	1
Merged-chr12-98274048-4	chr12	98273535	98274535	+	864.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	5400.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	4.71881254165449	4.88719671933313	4.68290463219663	4.8676638696847	4.82808437251707	5.26443501047042	0.48444866059915	0.234611410480118	0.630738593875039
Merged-chr12-81719901-4	chr12	81719380	81720380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61290.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	4.83435292121453	5.04909695983368	5.13025501605761	4.60851805010614	4.70673393274001	4.7782042883454	-0.693303141667252	0.0797781535514242	0.37356229021667
Merged-chr4-40947413-2	chr4	40946913	40947913	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171739, intron 1 of 6)	intron (NM_001171739, intron 1 of 6)	881.0	NM_009736	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	5.60360772835601	5.65819945180482	6.03715769813674	5.87104169503614	5.78021308673189	5.74810645253217	0.0623624726826278	0.847122461223759	0.964153933270046
Merged-chr6-87541142-4	chr6	87540645	87541645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7886.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.98104740457328	7.78000884068318	7.6989562575604	7.7470837763864	8.14282510531226	7.70045803494176	0.0842346324690948	0.734294751975248	0.932370904188192
Merged-chr3-103805857-2	chr3	103805357	103806357	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2728.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	4.87108698209145	5.38764860868511	5.56961754388877	5.22865096831369	5.30754531217834	5.41376278288679	0.0296717668531658	0.939452611197396	0.986720663284284
Merged-chr1-61373866-2	chr1	61373366	61374366	+	631.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4566.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	2.34543465117688	2.34510844078264	2.53012078146086	2.19550155834581	2.3313895302258	2.60314503711285	-0.14532522153774	0.865708336848566	1
Merged-chr11-21034211-4	chr11	21033663	21034663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57161.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.73328956419343	7.56640258249337	7.37448911275445	7.64549418238886	7.82606181837524	7.55863445228538	0.165729690027844	0.488813912987459	0.829423271678195
Merged-chr4-130782687-4	chr4	130782179	130783179	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9858.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.50864233686171	5.36810027987446	5.86890459576844	5.71922428344774	5.86106157490255	5.60050101559467	0.283613152243446	0.405828355765757	0.780439975167702
Merged-chr1-191741237-4	chr1	191740733	191741733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22838.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	4.32943343523854	4.09245304792885	4.167227583411	4.34780448282377	4.56091065422474	4.66042427600074	0.845712441258202	0.0644136341342828	0.330863644143085
Merged-chr3-88174102-2	chr3	88173602	88174602	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045997, intron 2 of 2)	intron (NR_045997, intron 2 of 2)	3683.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	3.61269849282943	3.85280523117628	3.66940971638484	3.77124940173391	3.5021607494987	3.98513344827052	0.131590154033923	0.817030163000565	0.956754861188725
Merged-chr12-18610061-4	chr12	18609555	18610555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	95545.0	NM_001201330	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	4.0803642758721	3.98078910138636	4.27705418580677	4.18531521415602	3.90976309425414	3.92763702609265	-0.286253920607633	0.568077644226565	0.868495285168263
Merged-chr4-143414412-2	chr4	143413912	143414912	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355724, intron 1 of 3)	intron (NM_001355724, intron 1 of 3)	1986.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	1.86368998717262	1.87047581784887	2.06617063040977	1.85154582945995	1.6667204942772	1.87468144661635	-1.22454859760727	0.23753254553194	1
Merged-chr6-31209602-4	chr6	31209117	31210117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	8857.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	8.2738537418182	8.24292494159334	7.93737839008533	8.10504212545845	8.57187814087516	7.73173258307216	0.0420810493272661	0.882462607700395	0.973184220613163
Merged-chr5-18036091-4	chr5	18035607	18036607	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCa|LINE|L1	73537.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	5.19285377969943	5.45153469110548	5.42579104100439	4.78764148343972	4.98999559777315	4.89969531932814	-0.959205237723233	0.0100851803938846	0.100982874875373
Merged-chr13-21168889-3	chr13	21168393	21169393	+	798.196289	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11038.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.28664422624519	5.42512711274843	5.45943057216484	5.56310185759678	5.72742494893781	5.55109475387693	0.448737266509261	0.172225288043041	0.550813766671229
Merged-chr6-43642458-4	chr6	43641889	43642889	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	L2|LINE|L2	23889.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	4.71909524081842	4.94018016688263	4.74054353696917	4.62181279952157	4.85935894286016	4.72752793854566	-0.143132688550818	0.723193099359906	0.929000340406704
Merged-chr13-102896001-4	chr13	102895496	102896496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	135741.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.97766028898934	3.68698389786379	3.85483364906293	3.60745324126354	3.58199859123093	3.55583794017998	-0.885622382820386	0.108249167165908	0.439439757112793
Merged-chr7-80209945-4	chr7	80209449	80210449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	L4_B_Mam|LINE|RTE-X	11508.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.64718835547984	6.5074480629253	6.03546033702657	6.22662246777884	6.40926636564329	5.74611966927208	-0.429748553286337	0.214060907975597	0.607279519630221
Merged-chr2-150833707-2	chr2	150833207	150834207	+	762.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	8863.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.5201038952663	3.64172592883038	4.0317997624752	3.28158064216031	3.46210007327651	3.92609949526523	-0.552621504032607	0.386206096816484	0.766979386557564
Merged-chr8-122870518-4	chr8	122870021	122871021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	22147.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	4.31942699796182	4.29787249809078	4.34826031407528	4.64775174048435	4.55239593166851	4.3247307429261	0.515894622303338	0.241469090076644	0.638486249270074
Merged-chr11-98817704-2	chr11	98817204	98818204	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-7615.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	5.34668065823693	5.40630859365597	5.9215862087574	5.39120689417705	5.61189253637304	5.57168126729514	-0.0765882033982646	0.832188190010849	0.960611438244586
Merged-chr14-13361401-4	chr14	13360917	13361917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	76637.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	6.22140085233409	6.39762316092122	6.15462811679987	5.71563331213633	5.95241270680029	5.78851947759629	-0.752342488293742	0.0120361667427814	0.114513252227356
Merged-chr19-11093501-4	chr19	11093006	11094006	+	776.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12403.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	4.44069650379088	4.54848206190198	4.54808148204274	4.17781205793109	4.17271254804435	4.17794604850722	-0.891697312302341	0.0460891500566934	0.271482443050586
Merged-chr16-91484261-3	chr16	91483719	91484719	+	921.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-996.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	6.278058447785	6.33305191525082	6.65480749914316	6.33239571950203	6.37693401283168	6.43007246965535	-0.0703977994122087	0.802160416135695	0.953161751100363
Merged-chr13-93233226-1	chr13	93232726	93233726	+	540.0	f1_balb.idr	Intergenic	Intergenic	-40809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	3.4299467805327	3.34406311744819	3.78592182147894	3.64427548702047	3.45179037634867	3.65910063773222	0.213219258442309	0.719471417841964	0.927884839305547
Merged-chr1-191068600-4	chr1	191068083	191069083	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	5562.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	4.34017126790511	4.33684052282649	4.44446995012039	5.5521296556034	5.54091739976283	5.09481056130215	2.36775768277258	7.6502333666981e-09	7.14433914675887e-07
Merged-chr16-62857700-4	chr16	62857211	62858211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	3404.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	5.31312340582998	5.6367166655998	5.56395855614337	5.77613751928135	5.87730916199741	6.08280788305245	0.732451908853873	0.0254535719560406	0.189135632730686
Merged-chr11-114568078-2	chr11	114567578	114568578	+	638.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100465.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	5.27582012764877	5.22977750567103	5.5993110631103	6.12399939772831	6.01967476551874	5.74333608851251	1.13245837941057	0.000689511612011382	0.0135217728522845
Merged-chr4-133586761-3	chr4	133586239	133587239	+	881.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290742, intron 2 of 4)	intron (NM_001290742, intron 2 of 4)	2366.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	4.23168908899322	4.18884134451844	4.05210218151147	3.57280065012749	3.28782068279195	3.77332831379999	-2.0941902963168	0.000342004481535501	0.0077562030252401
Merged-chr14-70781316-4	chr14	70780812	70781812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6931.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	6.26817584618305	6.4839933979167	6.71655394285099	6.24743809980395	6.64207020462216	6.74537961795714	0.105338017908716	0.726661825460955	0.929944741890142
Merged-chr6-83650639-3	chr6	83650117	83651117	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	5499.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.51505246873401	7.27797147656501	7.05342530019099	6.84036487099913	6.82335694715476	6.33088571848537	-0.457091623827527	0.161961297954861	0.535193761745733
Merged-chr19-53284622-4	chr19	53284115	53285115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25891.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	4.76450292275564	4.615374004919	4.60637294671303	5.01842115818337	5.07206603538005	4.83762386691053	0.720218330557829	0.0675252775199517	0.339885263558172
Merged-chr4-9009912-4	chr4	9009415	9010415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	258591.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.66345837592006	4.4606923548832	4.65749681885444	4.60032820706469	4.82260550670396	4.60209656565803	0.224235342478221	0.591611892467584	0.877710165381539
Merged-chr5-112344947-2	chr5	112344447	112345447	+	675.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138646, exon 2 of 14)	5' UTR (NM_138646, exon 2 of 14)	1852.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	3.7366714181981	3.94400432686449	3.60400118071027	4.08799323642972	4.01979626763855	3.84517350802036	0.662977426481992	0.217043020764348	0.610703221688078
Merged-chr2-73454874-4	chr2	73454350	73455350	+	857.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	-961.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.68246792583515	6.34142048333983	6.54461596843005	6.67852987841935	7.33136227445099	7.12703422353435	0.852041987677748	0.00426836639838441	0.0546318528773358
Merged-chr18-56573646-3	chr18	56573147	56574147	+	874.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127338)	promoter-TSS (NM_001127338)	-708.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	4.76505989310318	5.04995120063727	5.30419727061212	4.75061019906413	4.95531694936906	5.18948590091715	-0.166684559397451	0.684733777527799	0.915957882425817
Merged-chr13-34871715-3	chr13	34871194	34872194	+	677.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3800.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	3.49034314349726	3.4033955333759	3.47395068750492	3.68412427285147	3.54381196177841	3.24878015884363	0.201947735199567	0.738316845653489	0.934032187674406
Merged-chr2-138246064-4	chr2	138245574	138246574	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16C|LTR|ERVL	-10510.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	3.34960018331704	3.68373186843132	3.93180836618252	3.62326234103723	3.46632329402922	3.38706197341708	-0.606593500679846	0.322563729364912	0.715978413663286
Merged-chr13-30583487-2	chr13	30582987	30583987	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31556.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	3.78539467523541	3.58292807089051	3.90289094755457	4.08539187726389	4.12130081416844	3.97256143235919	0.961827378284242	0.0636989195939504	0.328860272341698
Merged-chr2-38511899-4	chr2	38511451	38512451	+	972.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	75.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.96811651756084	4.61669871158291	4.90017057827653	4.3098017081147	3.9332177489542	4.33624314269596	-1.63465868316979	0.000489260324481982	0.0103273396954583
Merged-chr15-25896964-4	chr15	25896470	25897470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-36582.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.13172903246272	4.15777932116674	3.74274626478987	4.23704077739206	3.77940926183435	3.81447192059565	-0.203272511892469	0.714188132456522	0.925756575982089
Merged-chr1-131069132-2	chr1	131068631	131069631	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	RMER6-int|LTR|ERVK	28712.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.44268947327724	4.40823329661036	4.60084955069923	5.34510517047187	5.38506901465735	5.6824753587881	2.18402424023804	3.44934160256203e-08	2.78382944777867e-06
Merged-chr10-127643892-4	chr10	127643400	127644400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	914.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	8.47387582965735	8.27449938174986	8.11186477098444	8.55605047815936	8.83221697241003	8.25038281560021	0.383814963842939	0.124294098055727	0.471732499134323
Merged-chr4-141454710-3	chr4	141454211	141455211	+	860.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009541, intron 2 of 15)	intron (NM_009541, intron 2 of 15)	10038.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	2.73468223614669	2.59450493275503	2.602470940004	2.83989378091871	2.51927677042964	2.92367305007657	0.643129262411488	0.408863485560197	0.782383854304252
Merged-chr13-47216485-4	chr13	47215992	47216992	+	892.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	22489.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.76157403761857	5.81245846366893	5.99359219836176	5.5210378284246	5.29374805328286	5.75495534690957	-0.612171628438973	0.0670522776798598	0.338487285153539
Merged-chr10-82763595-4	chr10	82763054	82764054	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010914, intron 1 of 7)	CpG	587.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	6.50364953189503	6.16168646212244	6.50317104376049	6.64234209549184	6.0104843620959	6.69101551702552	0.129079732834043	0.694707683991219	0.919217788511748
Merged-chr9-66082175-4	chr9	66081659	66082659	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12428.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	4.23941138184153	4.15644661636099	4.34818232778861	4.13655563264172	4.09651611815393	4.71739931972088	0.239575566743506	0.631723462811549	0.895251011359995
Merged-chr7-29224822-2	chr7	29224322	29225322	+	676.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033525, exon 3 of 3)	3' UTR (NM_001033525, exon 3 of 3)	7700.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	2.77825844965709	2.6059425523814	2.7162640551319	2.88377421210031	2.65103103779687	2.91204308167722	0.598390599478835	0.420150233372803	0.78951808081491
Merged-chr18-75459579-3	chr18	75459031	75460031	+	814.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-55114.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	2.79569139827306	2.77651754231045	2.82479324692204	2.90705040282536	2.64111137006231	2.50450591466362	-0.52927509957813	0.499253743063735	1
Merged-chr14-18234112-4	chr14	18233614	18234614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4992.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	7.75941586878756	8.02135589614515	7.67056432115498	7.72340810365357	8.29540826102653	8.0733712786742	0.321426974377919	0.214631940016182	0.607803643769065
Merged-chr1-54474604-2	chr1	54474104	54475104	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-35578.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	3.78703466079017	3.71762241288903	3.81779703031403	4.03280816307159	3.71900069478382	3.67538228266884	0.155059738421974	0.773228173515546	0.944014426479787
Merged-chr19-10204756-4	chr19	10204293	10205293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271615)	promoter-TSS (NM_001271615)	591.0	NM_026919	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	7.66069711444789	7.85366650711017	7.5448448270965	7.53886514774721	7.72421871755566	7.09636424044858	-0.298001075927556	0.268085457691585	0.665240807694185
Merged-chr3-83839249-2	chr3	83838749	83839749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011905, intron 2 of 2)	intron (NM_011905, intron 2 of 2)	2359.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	6.40571693330843	6.23723284436562	5.91266015825139	6.02839533233588	6.10185763357387	6.20189958980013	-0.176520220966932	0.560586282179974	0.865261302076164
Merged-chr15-95876153-2	chr15	95875653	95876653	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-46081.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	2.68388289688903	2.4865641766925	2.66979394074244	2.33304467489658	2.25308223759612	2.49472920264786	-1.68153324912693	0.0502783534540131	1
Merged-chr15-84221642-2	chr15	84221142	84222142	+	727.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10401.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	2.46041896658601	2.49607129469269	2.6872054448339	2.4097691608402	2.70957516384671	2.69970481622068	0.378503585657638	0.636434692953488	1
Merged-chr13-42054371-2	chr13	42053871	42054871	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007772, intron 1 of 8)	intron (NM_007772, intron 1 of 8)	2350.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	3.87302626198375	3.55585435204405	3.71514776367999	3.595774535053	3.38368654566557	3.39947694881045	-0.920765743240687	0.114688232436451	0.452186398382538
Merged-chr10-127114539-4	chr10	127114046	127115046	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	6614.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	4.33312714924877	4.03150446022016	3.85737272132127	4.02960311369225	3.59632851791962	3.64723542523922	-0.982819019450625	0.0819875183840993	0.378718446338826
Merged-chr5-123866653-4	chr5	123866156	123867156	+	745.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.41812373071948	4.31238174528301	4.53029531671261	4.8903974710664	4.94169881956114	4.68103432367154	1.04239671932077	0.0122659315025412	0.116006322853313
Merged-chr18-60748697-4	chr18	60748187	60749187	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-22.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.84877579355371	6.29013665408538	6.7073674779951	7.00694821163062	6.0893175072916	6.23629708853156	-0.190182466368102	0.604127961980465	0.882999516247791
Merged-chr17-69203003-2	chr17	69202503	69203503	+	809.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	43647.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.07211727765396	6.1899719420514	6.20441942315735	6.26326176017519	6.40538041485307	6.04452020752792	0.173829541276142	0.548127087734029	0.859504776665606
Merged-chr15-91186487-4	chr15	91186063	91187063	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358967, intron 2 of 9)	intron (NM_001358967, intron 2 of 9)	5444.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.62702427381307	6.62440920725716	6.65688643120406	7.02941561424876	7.49531776024927	6.64714793503153	0.744538209295362	0.0148529081248847	0.131682492192116
Merged-chr2-178869429-2	chr2	178868929	178869929	+	608.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	438914.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	2.83017886410726	2.94474362104619	2.94658862822179	2.91505474231913	2.77004824637321	3.34790948828924	0.553059940930122	0.44875606764057	0.807454029128485
Merged-chr4-116075863-4	chr4	116075365	116076365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	596.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	8.356081879703	8.52416726300598	8.28874214079829	8.44458822448705	8.33000686107814	8.3863529379531	-0.0139691189983466	0.94641860429092	0.988002063841177
Merged-chr9-121632091-4	chr9	121631506	121632506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	9587.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	5.76141003652382	5.55037201929382	4.98748037085001	5.61418887703515	5.37361422582874	5.09543958719127	-0.192704646812156	0.636996491880684	0.897256731014262
Merged-chr16-37871404-4	chr16	37870882	37871882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	2982.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	5.5113790398175	5.34805942727225	5.24599488936221	5.18153432427714	5.17382984879011	5.54639209000311	-0.156228621707789	0.663513697570234	0.90726254658643
Merged-chr13-20293016-2	chr13	20292516	20293516	+	757.56665	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-179974.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.10344902038228	3.13978668772676	3.24420050623886	3.46752770037906	3.12386139033078	3.01292867631944	0.240978575959402	0.717418180148243	0.927077249271794
Merged-chr3-88141550-2	chr3	88141050	88142050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-822.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	7.3967417362864	7.84971942959405	7.54529133427538	7.37475797317652	7.50803553970959	7.40730174633775	-0.265737745771127	0.283107604849632	0.681105823209534
Merged-chr12-98674869-7	chr12	98674372	98675372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46730.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	3.9000913266307	4.02254469251386	4.12699914512925	3.89497786998622	3.92506604506672	3.91093205363592	-0.314396036652351	0.528910123288257	0.850585575598857
Merged-chr19-60946806-4	chr19	60946304	60947304	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	57055.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	7.08829948832805	7.02756256612308	7.50674662237176	7.01465493085077	7.45588603923297	7.45781027633118	0.161590752591654	0.562830674383076	0.865755360453189
Merged-chr2-165987453-4	chr2	165986945	165987945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5192.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.67669449403816	6.1529275129145	6.51495831247356	6.94960724802471	6.91089566869075	7.05067616946482	0.790201208048375	0.00512761056821375	0.06225500046666
Merged-chr16-32275216-4	chr16	32274720	32275720	+	776.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183283)	TTS (NM_183283)	-2241.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	3.53394547328487	3.55391679533317	3.81393039492126	3.81680357732521	3.58852254457082	3.6296339283547	0.170377454190213	0.760820793641839	0.941022930067338
Merged-chr16-91466765-3	chr16	91466242	91467242	+	977.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077219, intron 1 of 1)	intron (NR_077219, intron 1 of 1)	1638.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.71846812982723	3.82191996099674	3.99305700950521	4.50588896882309	4.10888337683095	4.06345251393342	1.17814169466564	0.0225039117529803	0.17460886694722
Merged-chr2-11278988-4	chr2	11278528	11279528	+	858.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 13 of 17)	intron (NM_008859, intron 13 of 17)	-60461.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	5.5318494134379	5.78988486459782	5.39649085338662	5.84045712187141	5.82380200570156	5.32709039385149	0.192811803859313	0.589282509625725	0.876779541179768
Merged-chr14-55788886-4	chr14	55788404	55789404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019955)	promoter-TSS (NM_019955)	-47.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	6.79587323717352	6.83564494562443	6.57505584451161	6.85474221246986	6.94251473272258	6.34230516218243	0.0105533373487874	0.971218649015595	0.993727127580947
Merged-chr14-103346880-4	chr14	103346379	103347379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207215)	promoter-TSS (NM_207215)	-79.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	7.32093275758168	7.32403600284737	6.96241952200345	7.05831137577302	7.17077295602931	7.14137715121536	-0.146865264006352	0.555702929633926	0.86332697341212
Merged-chr8-86830319-3	chr8	86829819	86830819	+	742.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54939.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.8151270536841	3.92147115016484	3.88673405045247	3.77546845689685	3.19233874977875	3.5361730402564	-1.21276609886563	0.0489827821132689	0.281213111691547
Merged-chr2-48717996-4	chr2	48717501	48718501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96108.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.23671922364632	3.18211275397575	3.37803815862678	3.11786654383732	3.21695784349855	3.55026222215904	0.148012038968555	0.816938830980469	0.956754861188725
Merged-chr19-38027040-4	chr19	38026548	38027548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	16529.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.83978387689715	5.87154758051306	5.98999337880302	5.43654615215523	5.55605153221614	5.66520293218014	-0.632004985576736	0.0435729125478572	0.262366077221601
Merged-chr5-35743444-3	chr5	35742947	35743947	+	945.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3460.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	3.7058031920799	3.70038134569072	3.66779542292804	4.37176300414749	4.08516153379823	4.28586078823996	1.69976576970992	0.00106292756162321	0.01888600714474
Merged-chr8-13105593-4	chr8	13105085	13106085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	-136.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	8.18353681635304	8.68928930829836	8.41936561175483	8.3341684092915	8.56300053403862	8.20538496078867	-0.0967419652679027	0.692902489404175	0.91880752705484
Merged-chr2-72201679-4	chr2	72201159	72202159	+	746.875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83978.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.46224164811351	3.49689499166996	3.78148480957806	5.13612316687005	4.9477560669966	4.68838770140129	4.44677803203151	2.77864483071821e-12	4.92975435126655e-10
Merged-chr17-73933845-1	chr17	73933345	73934345	+	752.0	f0_balb.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	16351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	3.78785792735471	3.55907139941533	3.64237731659311	3.45744568397003	3.45748645296494	3.438695446318	-0.777919734285431	0.173687536746265	0.55292812026605
Merged-chr2-153562441-3	chr2	153561952	153562952	+	756.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32481.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.21405091552087	2.80148176911601	3.02848212602572	3.27395506788387	2.93247470649265	3.10210008124544	0.360582198055794	0.611475067952664	0.886122918847711
Merged-chr17-71002599-4	chr17	71002089	71003089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-56.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	8.14047710059594	8.12292506418942	8.06241656849061	8.25980145466177	8.28314345709701	7.96855790084968	0.104275075845571	0.632597227057486	0.895571551612667
Merged-chr11-51800961-3	chr11	51800423	51801423	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37260.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	4.46579790799037	4.57963395023118	4.501148326017	4.37564025641395	4.49171282273235	4.30273890368013	-0.29830454219899	0.492204232767305	0.830989749418726
Merged-chr11-20899129-4	chr11	20898629	20899629	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68021.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.03736801627287	3.953720371734	3.82096787322251	3.8152882309606	3.35799419262319	3.78801756629142	-0.91531935544182	0.110817419170936	0.444841551070303
Merged-chr7-67272326-2	chr7	67271826	67272826	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357325, intron 4 of 11)	RSINE1|SINE|B4	49710.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.5007528164415	2.49907611697672	2.75685555213854	2.56672389109784	2.35710446335508	2.82947608426324	0.0378316688462992	0.96322491962208	0.991082197093192
Merged-chr7-143594675-2	chr7	143594198	143595198	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013742, intron 1 of 22)	intron (NM_013742, intron 1 of 22)	5392.0	NM_001252593	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	3.73758813350177	3.98219181285623	3.94203864204867	3.96374645021339	4.0459573128356	4.1053858012628	0.444822121777385	0.377220629348374	0.759626672962717
Merged-chr13-24479054-3	chr13	24478571	24479571	+	729.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	63949.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.06384307387329	4.10646628633102	4.38100753719195	4.51126071005423	4.14590861562805	4.40598396946555	0.474496608729558	0.32055038633598	0.714352298545988
Merged-chr14-25768501-3	chr14	25767997	25768997	+	923.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 1 of 3)	CpG	359.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.5977530276382	5.7044644720031	5.89117309986689	5.75149853615058	5.38289756851959	5.60069508412383	-0.273906496815393	0.411273044295308	0.783877099438722
Merged-chr10-96342694-4	chr10	96342188	96343188	+	964.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116481.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.36352751271339	3.98641352980602	4.30227079734783	4.76478622461878	4.59143093275788	4.07136488812948	0.743013115294103	0.143048836803135	0.504905437873769
Merged-chr11-111067031-4	chr11	111066530	111067530	+	953.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	866.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	5.73161485916863	5.95633393373856	5.89878491067748	5.97073377371595	6.06756891758168	5.83620400241148	0.184447108148869	0.543231581863363	0.857545957833401
Merged-chr4-107577182-2	chr4	107576682	107577682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	106407.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	4.81537239216984	4.572823169623	4.62340562987867	4.6223624662238	4.32354161216724	4.52419238861735	-0.4566895346904	0.288267683337489	0.6856523853056
Merged-chr2-118597774-4	chr2	118597269	118598269	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-442.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	6.17096611211665	5.95942902052075	6.08095653271004	6.43802752737392	6.55316979347526	6.35075868137187	0.638332596155541	0.0226190770059174	0.175192044770984
Merged-chr17-87280117-4	chr17	87279621	87280621	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 2 of 4)	MER110-int|LTR|ERV1	2693.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	3.5910815725395	3.49997629699948	3.49877685964965	3.57369223702736	3.30453193082341	3.5696476606589	-0.182858006995912	0.753955198503115	0.938602852002384
Merged-chr7-75782161-4	chr7	75781682	75782682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66156.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.71677255631302	7.01617513084816	6.85921758817972	6.97847144808293	7.27485209740194	7.17020795870666	0.423351909088103	0.0996238843900894	0.420945531736552
Merged-chr2-58791920-3	chr2	58791421	58792421	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029692)	TTS (NM_029692)	36737.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.69277086969457	2.55774140990501	2.49339399974182	2.83263022849065	2.5702772516712	2.76085479947818	0.759019355621416	0.331139867512199	1
Merged-chr15-81846432-1	chr15	81845932	81846932	+	653.0	f1_c57bl6.idr	Intergenic	Intergenic	11894.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	5.73264587140024	5.6948920277499	6.52008628553069	5.91943256306878	5.98836590194258	6.36650326435198	0.118244532426375	0.753768823006541	0.938570691167124
Merged-chr12-8208239-4	chr12	8207746	8208746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167767, intron 1 of 5)	CpG	119.0	NM_001167767	68832.0	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	7.38505639077552	7.89621592254183	7.2196699110897	7.60152999904251	7.62179321222648	7.13368778871038	-0.0937968010737731	0.751057796181143	0.937718261890661
Merged-chr17-34199090-2	chr17	34198590	34199590	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010724, intron 1 of 5)	intron (NM_010724, intron 1 of 5)	895.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	5.52148721332063	5.44499962701947	5.5672799225501	5.88469247635489	6.05027110726518	5.81781927563021	0.768115339879102	0.0138141286857344	0.125604910656022
Merged-chr5-90881885-4	chr5	90881390	90882390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9355.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	7.59768021002531	7.04448054817542	6.82974905364846	6.42684613540774	5.79239054017297	6.23947774995748	-1.62527383778474	1.65351704149497e-06	8.38938085297031e-05
Merged-chr7-118491535-4	chr7	118491052	118492052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001033380, exon 1 of 1)	5' UTR (NM_001033380, exon 1 of 1)	423.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	8.23765381415979	8.41246600242908	8.35693580326915	8.22718758178611	8.2153635990561	8.35448096783456	-0.1024547299366	0.620495218464146	0.890175278240769
Merged-chr9-118680882-1	chr9	118680382	118681382	+	596.0	f1_balb.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-30810.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.12224669120716	2.84804172604619	3.32903539942559	3.1011201867794	2.8622656503422	3.23981254478128	-0.163176396240568	0.818273679357612	0.956893875468237
Merged-chr7-127206834-4	chr7	127206340	127207340	+	999.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1628.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	5.3185560995332	5.28179161540595	5.65495747336123	5.79469604423651	5.83688117722306	5.79287903829085	0.737759866409212	0.0244180982510857	0.18416620007096
Merged-chr12-17747464-2	chr12	17746964	17747964	+	666.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	56655.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.46759858581285	4.35878031895912	4.43991525258135	4.70057054504306	4.09988464102925	4.46463290604875	0.047537642772533	0.920082586904294	0.982235825946236
Merged-chr13-23751503-4	chr13	23751002	23752002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	414.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	7.41457959086593	7.95111016057939	7.56889757358305	7.63572410260936	8.17747546830845	7.63541208910049	0.260399352166086	0.360881143035374	0.746938274913623
Merged-chr16-10965154-4	chr16	10964648	10965648	+	923.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27973.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.13339318171658	3.7231864427362	4.02488801458143	3.87229162186262	3.51783819161605	4.00027111574799	-0.517439005172777	0.358339526591971	0.74463443132442
Merged-chr8-70700661-4	chr8	70700164	70701164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010592)	TTS (NM_010592)	2925.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	7.28335408891627	6.95343910864721	6.7356025513504	6.99427496529939	6.92609374325374	7.10753204660761	-0.0205734846839007	0.939696571706478	0.986731489878728
Merged-chr11-115195141-2	chr11	115194641	115195641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	7654.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	3.39406574044013	3.50866426971877	3.7811071061302	3.89763782183064	3.92100066915746	4.37154721688542	1.66086251688486	0.00390655197734207	0.0510292585448476
Merged-chr4-135675080-2	chr4	135674580	135675580	+	664.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_A|LTR|ERVK	-11377.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	3.25884374088244	3.17415575094571	2.98373139035869	3.31084668155877	3.03342310599312	3.18142867687745	0.122449080956024	0.853870998445998	0.965850084130104
Merged-chr2-38072248-1	chr2	38071748	38072748	+	620.0	f0_balb.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	215136.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	2.51169096572601	2.61671604574223	2.7813578983615	2.6524244120917	2.77415428119642	2.79410875141961	0.572604577660622	0.447808765938238	1
Merged-chr1-36369194-4	chr1	36368689	36369689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310513)	promoter-TSS (NM_001310513)	-8.0	NM_001310513	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	7.13475593211341	6.7591265440073	6.63189574156417	7.11043146319751	6.70983985547289	6.60305704656993	-0.0566574322989333	0.849352282397932	0.96465170861027
Merged-chr6-136826042-1	chr6	136825542	136826542	+	626.0	f1_c57bl6.idr	exon (NM_021714, exon 2 of 12)	exon (NM_021714, exon 2 of 12)	2174.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	4.34830259366434	3.73769232689158	4.13914717526925	4.51947326906723	4.6960841670729	4.48289715584411	1.23872946630496	0.014891093318574	0.131969122680999
Merged-chr1-33669788-4	chr1	33669291	33670291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033199)	promoter-TSS (NR_033199)	3.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	6.47553795426004	7.15298236725426	6.8891985349633	6.22158488711757	6.56656751650022	6.72998689849674	-0.552769380158743	0.0813464379022288	0.377326784876719
Merged-chr7-6150921-2	chr7	6150421	6151421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	5050.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	4.46534959822719	4.61925561677069	4.87485925690526	4.68055755740532	4.40372085687173	4.7621714001809	-0.0952064619911986	0.827463669359796	0.959467071709035
Merged-chr7-105750824-4	chr7	105750306	105751306	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009906, intron 3 of 12)	intron (NM_009906, intron 3 of 12)	1429.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	4.67762657907385	4.80598249025984	4.08738247240141	4.56073141759076	4.22916154629354	4.50057906938513	-0.334084056801524	0.502487591825781	0.836520898336192
Merged-chr17-46712069-3	chr17	46711600	46712600	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145488, exon 1 of 17)	exon (NM_145488, exon 1 of 17)	637.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	5.25055064072405	5.09704605675692	5.70158820867021	5.23537500170704	4.52326932548566	5.29237179506253	-0.633392290913741	0.15918831760304	0.531158781765317
Merged-chr1-144343462-1	chr1	144342962	144343962	+	643.0	f0_balb.idr	Intergenic	Intergenic	-94358.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	2.93884617414838	2.9686408444257	2.94488421626543	2.60769733587094	2.82811773964204	3.01678622392668	-0.621385088299185	0.399893126076156	0.776248940201881
Merged-chr5-24039640-4	chr5	24039140	24040140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8950.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	7.26787428346652	7.55405804043875	7.20464024877239	7.15456450106736	7.38361406817348	6.99868633535923	-0.236055229150389	0.363500142965656	0.749111350700572
Merged-chr7-110221715-4	chr7	110221185	110222185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-18.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	7.4521151358787	7.69554986474964	7.71948237449808	7.6623635716087	7.68467238117879	7.60447453611674	0.0400376993891737	0.859814499744499	0.967435965660262
Merged-chr6-113665533-2	chr6	113665033	113666033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	27066.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	3.36580914938873	3.03980531037642	3.25230900706555	3.37487176205239	3.44981430857426	3.54385496155219	0.906675246301102	0.148930201006306	0.514967759530116
Merged-chr8-91112311-3	chr8	91111803	91112803	+	982.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001302337, exon 10 of 10)	3' UTR (NM_001302337, exon 10 of 10)	21436.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	3.8075239576767	3.57789397431267	3.78249691909755	3.32022677695004	3.38170430770401	3.43218090083543	-1.2749839987987	0.0293636429474911	0.206063085297701
Merged-chr5-90894417-4	chr5	90893928	90894928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3183.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	5.61684059808474	5.62140601349437	5.70243021260744	5.07632144069655	5.01457930997901	4.88143287471329	-1.28767150732686	0.000233352807180115	0.0056724570201119
Merged-chr12-87236488-2	chr12	87235988	87236988	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027744, intron 2 of 7)	intron (NM_027744, intron 2 of 7)	2113.0	NM_027744	71275.0	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	2.53358664721155	2.58878390012007	2.68565734664291	2.69299931792033	2.45394947243853	2.50479693982365	-0.274156692262366	0.725902382232687	1
Merged-chr15-103482647-2	chr15	103482147	103483147	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 21 of 30)	intron (NM_153505, intron 21 of 30)	-20387.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.45228078694825	3.31112248466466	3.53159766207988	3.16796977243724	3.16484945546122	3.4456458727093	-0.687227013590322	0.269059516911893	0.66620753706903
Merged-chr15-95825346-2	chr15	95824846	95825846	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	4726.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.01063925005868	6.78244363907763	6.5888288493259	6.9149068146268	7.21756784283371	6.84644699949273	0.304490717229992	0.269703307245214	0.66686579973798
Merged-chr19-5024519-3	chr19	5023964	5024964	+	938.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007854, intron 1 of 11)	CpG	458.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	5.25460203763715	4.93192334576267	5.61039586244814	5.3246125331198	5.34981823396906	5.21408149030762	0.0375336659493103	0.922520500676891	0.982621045978137
Merged-chr2-140784816-4	chr2	140784328	140785328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	Lx5|LINE|L1	-113352.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.72328168874383	3.57815457009793	3.93808926089119	3.74648623102552	3.37344416229309	3.81833507093325	-0.320764839431097	0.58284520443239	0.873826743013405
Merged-chr1-46087258-2	chr1	46086761	46087761	+	745.833374	f0_balb.idr|f0_c57.idr	intron (NM_001160386, intron 6 of 65)	intron (NM_001160386, intron 6 of 65)	20523.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	2.347810858563	2.53467784248313	2.5677799837522	2.44504303361355	2.28166676195954	2.4524723631427	-0.584856452579166	0.477971235260939	1
Merged-chr2-75770883-4	chr2	75770380	75771380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61297.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.371190830083	5.32083863390018	5.18900936030047	5.29961874393566	5.55138244266548	5.38321462659475	0.236430021253495	0.492753002147427	0.831208279358962
Merged-chr6-114295744-4	chr6	114295234	114296234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13099.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.64008085622241	4.21890237219012	4.49012154166677	4.85564948896417	4.61405327829942	4.17606621380478	0.302665225348325	0.534599693349811	0.853068627162717
Merged-chr2-34728493-1	chr2	34727993	34728993	+	541.0	f1_balb.idr	exon (NM_001356441, exon 4 of 27)	exon (NM_001356441, exon 4 of 27)	26739.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	6.31248025498448	6.61129408745188	6.34134250615798	6.39521248101226	6.61927256128607	6.53066518624949	0.140030132686579	0.614904544845416	0.887639829057119
Merged-chr10-121474789-2	chr10	121474289	121475289	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	1461.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.63082198285301	7.7686066989254	7.43496481371011	7.51269746120628	7.79142241756666	7.47037815063512	-0.0260522093397505	0.914967112306421	0.980959026698783
Merged-chr2-30242756-4	chr2	30242234	30243234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	4965.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	6.42268353122479	6.58015426055552	6.41406770721421	6.26637973060823	6.70334594127714	6.37816900337959	-0.00571024342155547	0.984158885652249	0.996494104959385
Merged-chr17-43035312-2	chr17	43034810	43035810	+	696.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	PB1D10|SINE|Alu	18755.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.60026285476646	5.7995131842382	5.64995543642363	5.14211613771182	5.12344331134269	5.6861572700368	-0.688247762841585	0.0585686719105651	0.312958004902023
Merged-chr3-115815212-2	chr3	115814712	115815712	+	819.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72847.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	5.27805619591585	5.50277580366924	5.39770823920602	4.63747172133854	4.47735986074323	4.52518108262434	-1.88137977161853	1.57629474314617e-06	8.06333010602912e-05
Merged-chr9-21729424-2	chr9	21728924	21729924	+	903.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	5848.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	3.85215761942517	3.56769015658236	3.62920913915723	3.58370255447571	3.53727022351433	3.89923372033082	-0.0562752881938689	0.921204676214393	0.982526400261012
Merged-chr8-70649223-3	chr8	70648754	70649754	+	754.422241	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	10484.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.92693615840189	3.66728642054563	3.95133561023315	4.37155199004125	4.11677904058676	4.25588098902933	1.17717501831165	0.0198979121913031	0.160884800079093
Merged-chr6-42396254-4	chr6	42395784	42396784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3954.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	7.95196598473935	7.81594815551117	7.40203591232406	7.59558057314959	8.00922093420351	7.61640869950672	0.0143690260781438	0.957390018495666	0.98996830630481
Merged-chr10-22283001-3	chr10	22282502	22283502	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177775, intron 1 of 5)	intron (NM_001177775, intron 1 of 5)	9528.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	4.83943348473822	4.97646002627893	5.04587187400902	4.07279632024101	3.94256605453291	4.10798111461612	-2.41866266105243	1.69957016354112e-07	1.1358862182163e-05
Merged-chr8-79639255-4	chr8	79638755	79639755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256033)	promoter-TSS (NM_001256033)	-421.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	8.06063608680401	8.36171903945806	8.0406979104491	8.03619577286567	8.05959611283426	7.85475617318737	-0.249468540348479	0.272861519507319	0.669999153515064
Merged-chr16-3920996-4	chr16	3920505	3921505	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029738, intron 6 of 11)	intron (NM_029738, intron 6 of 11)	11996.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	3.5913900088264	3.33743838461917	3.3201065837351	3.06870261909002	3.00741695066532	3.33572872898455	-1.20643907780976	0.0660565202723075	0.335455046616916
Merged-chr15-59651982-7	chr15	59651497	59652497	+	787.571411	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	3343.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.51244614305965	5.00087345609475	5.09628766215231	5.45453519534948	5.1567708349596	5.26247901312686	0.132041886598939	0.731622081007831	0.931479001094019
Merged-chr10-121474152-4	chr10	121473652	121474652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	2098.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.22853221517253	7.19615666193225	6.8733010583094	6.94869736392849	7.15241442461045	6.83998395343743	-0.184807325347944	0.479772725546359	0.824391932626821
Merged-chr5-102011064-6	chr5	102010556	102011556	+	921.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	58865.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.08546430179108	6.96096718052716	6.68101111230345	7.04910037435238	7.00989869650262	6.9126309169148	0.0983143773110297	0.702817283936404	0.922000148631826
Merged-chr15-5517589-4	chr15	5517076	5518076	+	837.552063	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21258.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	5.96401354775921	6.2545704629765	5.89072267605165	5.98660442103145	6.06353641273424	6.13650251731217	0.00921150051546478	0.975629936579819	0.994540154302743
Merged-chr5-140768532-4	chr5	140768040	140769040	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	44413.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	6.08717356535524	6.31574269450013	6.31933771723438	5.78323740772008	5.87051055734936	6.03334899418305	-0.599947095561459	0.0426679054013004	0.259024566796261
Merged-chr17-27555738-4	chr17	27555218	27556218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166536)	promoter-TSS (NM_001166536)	-856.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	7.44304208842655	7.34227477595088	6.85347958032794	6.9849092368878	6.68064106961044	6.38901248698624	-0.808947639656132	0.0079350489958152	0.0855812776207117
Merged-chr14-30764606-3	chr14	30764103	30765103	+	813.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	48988.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	4.00805256757047	3.92590675589963	3.63431793846609	3.67975317642686	3.59178607878963	3.70618695741151	-0.716751230937612	0.190892717221052	0.577428967011753
Merged-chr9-78437360-2	chr9	78436860	78437860	+	718.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_173386, exon 2 of 5)	exon (NM_173386, exon 2 of 5)	5877.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	2.74158567250465	2.33913924865619	2.40862661101033	2.59169240495692	2.46515272891972	2.80187013706017	0.631680476435346	0.457807589034412	1
Merged-chr12-71014562-2	chr12	71014062	71015062	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045056, intron 1 of 2)	intron (NR_045056, intron 1 of 2)	1261.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	5.18179490205283	5.54445230692514	5.20665489049635	5.40843014959621	5.62941120119775	5.73498330203754	0.506673874728599	0.153574694538422	0.522532447327076
Merged-chr4-9111156-4	chr4	9110655	9111655	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158138.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.46875757581029	3.59227638294805	3.33738669028621	3.68106599195388	3.70933457494263	3.84406381744799	0.926954494255383	0.106620136746501	0.435916169724877
Merged-chr16-91477819-4	chr16	91477322	91478322	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7393.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	7.2392901639493	6.71281650811174	6.96323022375068	7.01919562487067	6.95174220815553	6.9801829908802	-0.0131502739805319	0.961083820367288	0.990412445817909
Merged-chr2-11706327-2	chr2	11705827	11706827	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	615.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	6.33520572628683	6.27160236197396	5.93499245944695	6.26888981074596	5.92780658660693	5.8143475934262	-0.304204258686104	0.339066444829439	0.72903797879449
Merged-chr10-44494670-3	chr10	44494168	44495168	+	965.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35920.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.31077228314445	3.46756466765405	3.33870300511535	3.30763930425384	3.08381538873597	3.29687294271375	-0.602368950078931	0.334178142345287	0.724803152263249
Merged-chr17-31040707-4	chr17	31040222	31041222	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.46985154421946	7.43900460337198	7.33700904234788	7.11055126947653	7.41650898825725	6.56566364944512	-0.481768289192002	0.107892220166086	0.438675585418016
Merged-chr4-156077435-5	chr4	156076960	156077960	+	808.679993	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17658.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	3.64405887469141	3.55119530306584	3.63440156629334	3.5658868085692	3.27852331757425	3.60016146317712	-0.464236795098858	0.425964120125797	0.793472486678174
Merged-chr2-9990352-3	chr2	9989844	9990844	+	707.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58265.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	4.69831296849561	4.75066579612276	4.63701432813573	4.81001920571114	4.90776776450108	4.57590175156022	0.192955386348541	0.635629157177674	0.896689400512689
Merged-chr12-100779584-4	chr12	100779058	100780058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145448, intron 1 of 12)	intron (NM_145448, intron 1 of 12)	501.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	7.25326041907045	7.39724096888723	7.28413291472694	7.16923776985377	7.17244598383138	7.27312025546427	-0.167488974599734	0.468751411631544	0.818701612865445
Merged-chr14-31583279-4	chr14	31582768	31583768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5885.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	3.55142247621467	3.28801177722387	3.62442639303584	3.90149892331811	3.65098676319803	3.5872964165339	0.809947299459613	0.166038656526299	0.541111888340174
Merged-chr4-150488304-4	chr4	150487795	150488795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163879.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.72911586908223	8.05177688689981	7.53560717334748	7.44803617605639	7.82731564567353	7.36498612650156	-0.324382260028952	0.2302190964233	0.626097221048175
Merged-chr4-59009333-4	chr4	59008832	59009832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033165, intron 1 of 3)	intron (NM_001033165, intron 1 of 3)	6139.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	4.41183207544136	4.37208600911566	4.02957658381298	4.1743122079742	3.95000665288154	4.46313253615364	-0.236535175250146	0.639373095214062	0.898058009901615
Merged-chr4-124803654-2	chr4	124803154	124804154	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	1105.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	3.51844229235611	3.57872969988645	3.36080693173458	3.494070496214	3.65393470445697	3.70700973316829	0.444100576965566	0.440655416147828	0.801899568428582
Merged-chr16-84834933-4	chr16	84834435	84835435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	41.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	8.20916606785948	8.38194933151304	7.9796638915729	8.24229617975822	8.27236060810744	7.84732283997387	-0.0907989668687924	0.711027874395688	0.924558647751225
Merged-chr13-52586726-2	chr13	52586226	52587226	+	853.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	3289.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.67757588615524	5.81272195774992	6.23629902182727	6.0763349839953	5.72533900666205	6.23939515493997	0.177132663972432	0.607544837584251	0.884606205850007
Merged-chr11-110972798-1	chr11	110972298	110973298	+	555.0	f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	MTA_Mm|LTR|ERVL-MaLR	4765.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.48684188335606	4.22127416005864	4.6153299970886	4.20589206280573	4.36692815209359	4.44349238728057	-0.266547287423577	0.560847569979924	0.865325507192462
Merged-chr6-39084400-1	chr6	39083900	39084900	+	581.0	f0_balb.idr	3' UTR (NM_011539, exon 13 of 13)	3' UTR (NM_011539, exon 13 of 13)	-16814.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	3.13893994935793	3.3837362505609	3.52496227453719	3.24762837382314	3.14142937120318	3.21626153740822	-0.623252423289074	0.327691015439052	0.719859351829734
Merged-chr2-132262432-2	chr2	132261932	132262932	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-716.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	3.78229772759186	3.66252483827248	4.18328984503257	3.75146227958721	3.8614365630212	3.94055782784132	-0.102420289616642	0.851325911566649	0.965211450762173
Merged-chr6-113641011-2	chr6	113640511	113641511	+	828.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	2544.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.20811229245301	5.69584859442415	5.30538396764185	5.72930181424236	5.63790465535044	5.46526842364151	0.358070102954164	0.316240278221237	0.710336925554279
Merged-chr7-136321901-3	chr7	136321411	136322411	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27504.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.57050107264326	4.42060382849627	4.95320413803308	4.82321365444321	4.84116193442697	4.64927554982444	0.291883376903452	0.497801563763944	0.833791434757709
Merged-chr12-69425076-4	chr12	69424584	69425584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50466.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.23746952482371	6.44615709641707	6.44721729457132	4.65458979742258	4.82536867883187	4.91903127179507	-3.063054973648	2.51510590549746e-17	1.07874707311666e-14
Merged-chr6-97508713-3	chr6	97508225	97509225	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20905.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.80401592600461	4.75392182087797	5.04875713678868	6.15203689043714	6.50750885962862	5.97349792385269	2.64368763984504	1.15087041828575e-13	2.61643786242407e-11
Merged-chr9-118656294-1	chr9	118655794	118656794	+	543.0	f1_balb.idr	intron (NM_133721, intron 5 of 27)	B4|SINE|B4	49585.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.16047705536137	4.85972518056697	5.18972010893395	5.0629525600177	5.11123797628521	4.98174179998254	-0.030185230740362	0.936064997420644	0.986014061025137
Merged-chr13-85286762-2	chr13	85286262	85287262	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	B3|SINE|B2	2724.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.5640581611362	3.79340650839357	3.52871799202883	3.50126410023399	3.56294297286577	3.7573487923595	-0.115548023139813	0.838971707039422	0.962661318823582
Merged-chr6-31353641-4	chr6	31353146	31354146	+	949.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45127.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	3.41126729541911	3.62957060308089	3.4865993049218	3.68198540582398	3.65957674426362	3.50169159366783	0.378229614616002	0.508051529688726	0.839568471606679
Merged-chr5-146781819-4	chr5	146781258	146782258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	L1M4|LINE|L1	13198.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.96608961649044	7.19636588390215	6.49926667524121	7.03591607871988	7.38705772263758	6.93242280489872	0.3184713841628	0.294791141380821	0.691728256671312
Merged-chr8-25544299-2	chr8	25543799	25544799	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	11784.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	4.1666177194521	4.15108476470064	4.08306062792433	4.53902816017824	4.05233976308964	4.42507363523266	0.575409013518555	0.236938190867645	0.633412320506677
Merged-chr2-5793045-3	chr2	5792563	5793563	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51971.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	4.36691193839012	4.02532448343608	4.26760563821987	3.9947862368561	4.23456502089259	4.10611540472718	-0.296959453029545	0.543598932041177	0.857551302506722
Merged-chr16-32247113-4	chr16	32246568	32247568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173439)	promoter-TSS (NM_173439)	-43.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	7.07827049644267	6.73514007622451	6.83327111260741	7.18251718313474	7.01756369419846	6.9923488998842	0.266798744517304	0.299394188318023	0.696176828235136
Merged-chr5-64934854-2	chr5	64934354	64935354	+	696.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1296.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.11744059279173	3.15781897433186	3.29336807655161	3.34129035647077	3.30128531579057	3.25127854892232	0.468189958780753	0.449884839068793	0.808013574003465
Merged-chr7-75691508-2	chr7	75691008	75692008	+	847.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 14 of 36)	intron (NM_029332, intron 14 of 36)	-156830.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.93896758684684	4.07472404705841	4.06889440228723	4.55164245028206	4.69989060298791	4.4222063382764	1.46260446656079	0.00155766090263458	0.0254386356008672
Merged-chr5-34538105-4	chr5	34537606	34538606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-5259.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.94023194122985	5.47205884378671	6.01545847439907	5.8943137265942	5.75828715337623	6.13813555242901	0.190236725673893	0.577528677140678	0.872148719828391
Merged-chr7-142443894-2	chr7	142443394	142444394	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009405, intron 4 of 5)	intron (NM_009405, intron 4 of 5)	1426.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	4.10452607793543	3.85005587491644	3.95891987885544	4.40162022355645	4.26565733839693	4.70810079946793	1.33502472463586	0.00700351106717248	0.0781373221878905
Merged-chr17-25773726-4	chr17	25773234	25774234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026238)	promoter-TSS (NM_026238)	-42.0	NM_026238	67563.0	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	5.33903797361036	5.85010404408951	5.80095418148637	5.58216812799921	5.71116229662736	5.65832301141858	-0.0508346302070922	0.88231558610476	0.973129606025635
Merged-chr3-41083208-4	chr3	41082725	41083725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027558)	promoter-TSS (NM_027558)	-179.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	6.57158742233382	6.87407428793006	6.7157845519696	6.73958160782989	6.49126955999511	6.84905962669216	-0.0555355018693203	0.839074052089016	0.962691988776977
Merged-chr3-51331710-2	chr3	51331210	51332210	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	8934.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.51716466457375	3.42926140656158	3.50807304752518	3.67221458525206	3.54474645856431	3.88152104527658	0.75502839925018	0.184317020427556	0.567897898086946
Merged-chr9-32445929-4	chr9	32445432	32446432	+	754.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	51947.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	3.4020751164054	3.12055461360634	3.1084798399816	3.27673866533019	3.45088618255081	3.52386728139949	0.778382759451607	0.22336646435302	0.618087468987021
Merged-chr10-96620076-5	chr10	96619567	96620567	+	947.405701	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3066.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	6.63735210084126	6.55974653661179	6.5527888403695	6.90140867840918	7.04815000038256	6.5765217452362	0.444856072747552	0.1007372995225	0.423286414777412
Merged-chr5-125407439-2	chr5	125406939	125407939	+	876.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-17422.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.16806021562599	3.08856176721837	3.36892197893391	3.32384310369901	3.34138656656143	3.33010873356736	0.51489464303844	0.407518925850709	0.781633737084177
Merged-chr4-7392675-3	chr4	7392175	7393175	+	898.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168013.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	3.25774053729464	3.11816016862296	3.25603822993839	3.15667782608396	3.48908403671511	3.32764694513986	0.511655844199859	0.418664526181725	0.788726823651631
Merged-chr6-72544545-6	chr6	72544037	72545037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271415)	promoter-TSS (NM_001271415)	0.0	NM_001271415	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	5.76750697745279	5.5452758685525	5.68767446177811	5.29488439522258	5.25072348027729	5.03259905319945	-0.895120303816299	0.00951996995587348	0.0971352127637425
Merged-chr11-65807150-4	chr11	65806673	65807673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-2.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	8.4969622331955	8.89019800551969	8.27508287519626	8.51057886992011	8.77618539547465	8.23765686580865	-0.0731135038974032	0.784242559993205	0.947513080979134
Merged-chr3-16183126-4	chr3	16182612	16183612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-53.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	8.83230323239919	9.00382500394074	8.58328831318808	8.57995358757434	8.61300729233573	8.32276965057446	-0.423035685742653	0.0630354447403234	0.32667775547017
Merged-chr9-13651831-2	chr9	13651317	13652317	+	571.5	f0_balb.idr|f1_balb.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-10643.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.15045153954258	3.9617650055627	4.4079997619521	3.60411294760023	3.642224050658	4.01280476356792	-1.29922367896328	0.0179777128704458	0.15063246330188
Merged-chr1-132317592-4	chr1	132317097	132318097	+	964.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	1472.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	6.63436792462507	6.86954920670952	6.76114895278037	6.89024007897775	6.99858323315178	6.78880720998523	0.220426873686602	0.387091770619694	0.767450548016952
Merged-chr7-129330671-2	chr7	129330171	129331171	+	700.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	73577.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	3.37981934930621	3.45211631003182	3.50035650716788	3.52466491929732	3.14701042858704	3.62231836564514	-0.0130055221095116	0.983288390889892	0.996255225925919
Merged-chr10-67059120-2	chr10	67058620	67059620	+	785.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	37868.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	3.13156568755634	3.25949331438999	3.28935980237533	3.62752605490937	3.30640250453934	3.24385048894714	0.709616080226621	0.260558089411252	0.658027962349749
Merged-chr5-139197181-4	chr5	139196674	139197674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3463.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	6.48393063200888	6.38528594078556	6.79025029415289	6.5513511064151	6.53065048289621	6.40479547449345	-0.085090736804995	0.759512595207129	0.940467335664674
Merged-chr12-98267812-4	chr12	98267308	98268308	+	959.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-827.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.00961307469473	6.88912580690287	7.2375321627829	6.87549234643209	7.15036392593007	7.042056783511	-0.0230790042401935	0.928557517757953	0.9838211976673
Merged-chr10-44607948-2	chr10	44607448	44608448	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2C1|LTR|ERVL	-149200.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.98875748056302	5.47599506967446	5.09247440432024	4.99918876225511	4.96205405242881	5.19034892165199	-0.341403197914612	0.379117538998343	0.761621772253655
Merged-chr6-29214555-4	chr6	29214005	29215005	+	781.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1859.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	3.60565775125742	3.24103158180798	3.35781185312322	3.5940955542767	3.20627223837889	3.37244483775946	-0.0538873572145158	0.932356900270622	0.985087224393733
Merged-chr18-75369869-6	chr18	75369320	75370320	+	921.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	2455.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	5.01481007289878	5.16098174284906	5.23525519635856	5.55789854500555	5.4401940140677	5.48128592116299	0.71299671011331	0.037831572982419	0.240520274506634
Merged-chr6-87533233-4	chr6	87532706	87533706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	53.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.8523805181413	7.81982297636825	7.67495890436819	7.95766482664156	8.23396612013478	7.91187917718177	0.3712673231854	0.103356809165169	0.428463201325997
Merged-chr2-153163145-3	chr2	153162649	153163649	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1848.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.19697761331363	5.38083911712435	5.42447715378795	5.71370833258619	5.26197024713745	5.30219236362356	0.21335431841609	0.555157013669499	0.863184776736198
Merged-chr8-121108958-2	chr8	121108458	121109458	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-579.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	5.69724192564723	6.02848071888603	5.91524087922048	5.86510812646537	5.97394483482236	6.19227159220378	0.214790382514956	0.491590830127293	0.830577684235539
Merged-chr7-73531391-2	chr7	73530891	73531891	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	B3|SINE|B2	10355.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.91096624278924	6.20861330457985	6.12597896758246	5.83238045552713	6.1306835455094	5.91400311841658	-0.196008725264451	0.522878907179433	0.847822517072047
Merged-chr11-70787886-2	chr11	70787386	70788386	+	797.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23439.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	7.15535209711915	7.1215021242204	7.1709952768876	7.22913244633079	7.13600096651489	6.98075429539271	-0.0363019154445792	0.878767912806615	0.972000507462599
Merged-chr17-45552239-4	chr17	45551728	45552728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2551.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	2.54082454023156	2.30425370326067	2.21873124652876	2.43244688697443	2.35803525124478	2.68488014852841	0.801846930301918	0.363288650373686	1
Merged-chr6-33539735-3	chr6	33539221	33540221	+	907.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	290593.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.89655283607426	5.04831233303344	5.18549707178348	5.2360308275986	5.31431378305732	4.97126092129625	0.315716557376178	0.399298985446926	0.775774492880074
Merged-chr13-113589735-4	chr13	113589241	113590241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28823.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	7.91740847392543	7.86432888414427	7.39830223873246	7.56155586296945	7.83903535548407	7.15825982102363	-0.279097431276626	0.334585139899342	0.72506082039598
Merged-chr10-44005884-4	chr10	44005385	44006385	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	3.4117080743834	3.39962554783335	3.33333888091734	3.43177949340561	3.32439320236902	3.28883466656937	-0.130712062777054	0.826704570338309	0.959260889561903
Merged-chr13-52042062-4	chr13	52041559	52042559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54682.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	7.24554181594686	7.4293062085902	7.4125951581376	7.29796164835878	7.70636199272241	7.20713092383988	0.103392628313918	0.690673594518602	0.917915728386653
Merged-chr9-108338554-2	chr9	108338054	108339054	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329528)	promoter-TSS (NM_001329528)	-526.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	6.70825299970564	6.39584882451509	6.70217814793419	6.53810791088157	6.7239520606815	6.72988155827375	0.0972683747693356	0.719461531467653	0.927884839305547
Merged-chr1-75188119-4	chr1	75187618	75188618	+	970.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003917, intron 5 of 15)	intron (NM_001003917, intron 5 of 15)	3892.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	2.75152124178272	2.64573846941404	2.92342530778719	2.72785331011352	2.59883473247627	2.69839509368722	-0.54109850586924	0.468797022370466	0.81871260027821
Merged-chr18-4348970-8	chr18	4348491	4349491	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007746, exon 2 of 8)	exon (NM_007746, exon 2 of 8)	3962.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.78457656928998	7.30236461119289	6.70513162442887	6.80894866573905	7.06959549526603	6.88909433265569	-0.0590474642291746	0.839249653710729	0.962725890398731
Merged-chr1-156522314-2	chr1	156521818	156522818	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-36469.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.86563033152391	2.90327963544424	2.67969047546797	2.8456095023924	2.97812797290813	2.9443923220704	0.489048972007302	0.497120336869606	0.833442633454308
Merged-chr8-72220878-2	chr8	72220332	72221332	+	919.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026455, intron 2 of 3)	intron (NM_026455, intron 2 of 3)	1102.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	4.59902479359575	4.61720009966341	4.48452430951233	4.45782013604388	4.40883860292353	4.37507826117235	-0.393865365463183	0.354659879091214	0.741838331331706
Merged-chr12-85473540-4	chr12	85473037	85474037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-353.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.72234656761274	8.49579773563203	8.1386435091798	8.42520753971778	8.49154526748802	7.92331466677431	-0.23510703133693	0.384241103998282	0.765372305782707
Merged-chr2-31087203-3	chr2	31086695	31087695	+	666.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	9305.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.47410355489317	5.59272499334252	5.81025183347798	5.34574785214477	5.23177609840477	5.48668572440695	-0.528009320395139	0.121263442696207	0.465694380741473
Merged-chr15-50449768-4	chr15	50449281	50450281	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	439268.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.76603598053214	2.96759548668456	2.84928338304007	2.83679570094217	2.92667695002962	3.15435293597813	0.522425026862388	0.461490320214379	0.814992635038861
Merged-chr5-113398183-3	chr5	113397669	113398669	+	902.1889039999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40875.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	2.96413074793606	3.21681855134939	3.03719076482764	2.90187481960541	2.80990837030826	3.05060330825897	-0.77437297033936	0.265635624714048	0.663375523311218
Merged-chr15-84232210-7	chr15	84231656	84232656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133167, exon 1 of 13)	exon (NM_133167, exon 1 of 13)	113.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	8.03366250368464	8.37217159571682	8.13048363851499	7.90863279862114	8.10421620830717	7.89023429378889	-0.30199734620273	0.185769288549187	0.570056884374864
Merged-chr14-58284666-4	chr14	58284149	58285149	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	211963.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.15207582431414	3.23984309695891	3.7605196017541	3.41916338283489	3.40455202542057	3.73579250998374	0.434297178933996	0.506102741274522	0.838289047715586
Merged-chr2-77284615-4	chr2	77284117	77285117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-4025.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	5.93649488428538	5.87838027709965	6.01198981211604	6.00514820996123	5.85916590204673	6.05042959826347	0.0493190698595782	0.867348123576823	0.969325012731494
Merged-chr7-126144518-4	chr7	126144027	126145027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	MTD|LTR|ERVL-MaLR	55974.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	6.31661774945006	6.15236884020942	6.45606301622903	6.18064035089476	6.53261073046955	6.44438160042237	0.149624925784554	0.604618733069897	0.88314896167691
Merged-chr12-3890950-2	chr12	3890450	3891450	+	899.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-794.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.67289788649225	8.0889164133989	7.76013493753441	7.76239591818569	7.93398767402982	7.51375390017866	-0.147378251752171	0.561988238547828	0.86560636450104
Merged-chr12-85280392-4	chr12	85279901	85280901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	34.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	7.70909065886495	7.77186643905886	7.20206237668982	7.35324230633497	7.60167946075136	6.91991286758084	-0.379734777528822	0.203876119584492	0.594065140719514
Merged-chr2-27677776-3	chr2	27677258	27678258	+	867.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	CpG	557.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.610068632115	7.07624921787578	7.05114097983132	6.90026749685643	6.84610703871287	6.92323671432502	-0.0599495710725821	0.824453139150374	0.958596193929081
Merged-chr2-163642277-2	chr2	163641775	163642775	+	914.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_012032, intron 1 of 9)	intron (NM_012032, intron 1 of 9)	-2575.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	5.9562385043491	6.10207471441025	6.13386950229447	5.49835047224473	5.896948302706	5.58398438823796	-0.670349462700954	0.0379864206526305	0.241151605223475
Merged-chr19-59114469-3	chr19	59113954	59114954	+	588.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-38385.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.24583301071733	3.29388603234615	3.05888233065825	3.55183036077767	3.10053102638282	3.25741028752325	0.438118860162397	0.509272655227402	0.84026772146894
Merged-chr9-47645222-2	chr9	47644722	47645722	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	114870.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.31116034998452	5.52501933300823	5.23642312525917	5.17976985360317	4.96210875780868	4.98453718825957	-0.664841899585408	0.0672748104493694	0.339137666469697
Merged-chr2-27381449-1	chr2	27380949	27381949	+	674.0	f0_balb.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	46159.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.26812578690148	4.26010059960135	4.17259850567633	4.5047544249006	3.98662408646185	4.14528369903242	-0.0189430300742387	0.969222714494811	0.993022156213313
Merged-chr7-5058810-2	chr7	5058310	5059310	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	2084.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	3.41410385341138	3.29489600717924	3.89268519860422	3.89979112073344	3.4014346526356	3.86872599101113	0.626384448160406	0.324794297862143	0.717732085210421
Merged-chr1-171044729-5	chr1	171044240	171045240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14654.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	5.45493296017226	4.98243983211114	5.21360786711904	4.92160907024349	5.44652169536356	5.27755377381233	0.0137915228037541	0.972291095391609	0.993868590220018
Merged-chr2-30135451-4	chr2	30134967	30135967	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1721.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	6.17573555894199	5.77331768630305	6.21750515180552	6.33733096704334	6.11965541555392	5.92102133487829	0.133229639580918	0.676758446296131	0.912549881054299
Merged-chr9-108848947-2	chr9	108848447	108849447	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 35 of 36)	exon (NM_001359573, exon 35 of 36)	-5096.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	3.38677308587138	3.27364068962955	3.39652051686995	3.72915551239113	3.42417873916793	3.46870849062204	0.735535124444382	0.216449160273301	0.609925696753694
Merged-chr4-43973681-4	chr4	43973183	43974183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-9821.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	5.91403231836148	5.64887758018969	5.40455132921932	5.44708832243147	5.49047791938736	5.52941402998185	-0.367321848476913	0.281377841645886	0.679520750186356
Merged-chr13-85596822-1	chr13	85596322	85597322	+	953.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-307336.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.4405251041918	2.49798951332573	2.25185635795425	2.5130181371282	2.29849974361504	2.77686073289003	0.823258019080231	0.352001537808378	1
Merged-chr2-84476783-3	chr2	84476301	84477301	+	899.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177320)	promoter-TSS (NM_001177320)	-26.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	4.21603117748795	4.15585590354763	4.18620045694726	4.41459678971266	4.09609706326409	4.38660501369781	0.309431967802666	0.509131678289533	0.840256821151416
Merged-chr15-103313584-4	chr15	103313099	103314099	+	923.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013866)	TTS (NM_013866)	-3161.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	3.0429306850488	3.07717507046058	2.89839362954403	3.03961763410913	2.78207372352732	3.52438035927779	0.603326900664879	0.420375811812562	0.789603163712491
Merged-chr4-117916635-3	chr4	117916173	117917173	+	677.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1674.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	3.78763676560142	3.80782544099195	4.13310229499449	4.3527867101138	4.13043181654462	4.37358628127121	1.09222539586157	0.029229304577991	0.205442005718682
Merged-chr9-57655912-4	chr9	57655388	57656388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2257.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	3.91212788188736	3.79403131804004	3.74842984948988	3.87757316490463	3.97979620133501	3.71023405740881	0.14376775862087	0.784920056870738	0.947809080108266
Merged-chr9-59732240-2	chr9	59731740	59732740	+	941.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	18409.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	7.79535662722775	7.71873836320152	7.63612226734616	7.68879304689526	7.90354160214973	7.48315395058085	-0.011846585984306	0.960161434719282	0.990335445597503
Merged-chr10-44599687-6	chr10	44599151	44600151	+	972.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140903.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.63471082916359	7.71121063386242	7.80891259139331	7.84949685424555	8.16780952748604	7.70012754321612	0.304207013727064	0.206497965980029	0.597141275948059
Merged-chr12-108636203-3	chr12	108635714	108636714	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 1 of 14)	intron (NM_001163396, intron 1 of 14)	461.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.70045658746844	7.91858189696553	7.65442086212792	7.76921569919733	8.00803211450597	8.02067934088845	0.243358281071236	0.289096174672562	0.686633011876864
Merged-chr18-23844298-2	chr18	23843798	23844798	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	B4A|SINE|B4	40328.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.89191731965046	6.64868389536617	6.74086142197487	6.99660928281606	7.48825346638909	6.84701374706518	0.59392138937234	0.0404291129712582	0.250541311266531
Merged-chr3-97736444-2	chr3	97735944	97736944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	31570.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.16231637045637	4.20036625362674	4.16638121726157	3.77836568612292	3.82481367137528	3.61616929052824	-1.30801879604126	0.0123177135539414	0.11632417539398
Merged-chr4-62296430-2	chr4	62295930	62296930	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290518, intron 3 of 3)	intron (NM_001290518, intron 3 of 3)	4883.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	3.10144509432607	3.05259829467742	3.58928076342874	3.25451755743178	3.02349330040823	3.35669957427324	-0.198232167618559	0.77178712907327	0.943614978016208
Merged-chr5-66144464-4	chr5	66143953	66144953	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	6525.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.1741381637922	5.06842131721137	5.30055965011757	5.86899976425999	5.75346243036341	5.45907881391016	1.03592906236614	0.00262514334679742	0.0380449184324014
Merged-chr7-130546946-4	chr7	130546457	130547457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162855, intron 1 of 10)	CpG	424.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	7.52214459892265	7.76504229972269	7.24519934931581	7.11859944086193	7.29224483694354	7.11340114076027	-0.524887066506816	0.0416585174814818	0.255214395714853
Merged-chr9-123927436-4	chr9	123926924	123927924	+	904.162476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41268.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	8.14500543837032	8.15437576358205	8.04195616835876	7.98847296606527	8.16991794310899	7.66403766985739	-0.211179266651727	0.37389779740095	0.75761081032846
Merged-chr17-50491679-4	chr17	50491178	50492178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER105|DNA|DNA	-17869.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.86403997008176	4.9869214302488	4.78599140852423	4.90970904898034	4.96658933377261	4.92806497358885	0.106843293082573	0.778769094547748	0.945520893795831
Merged-chr2-118011914-4	chr2	118011426	118012426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	99276.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	4.73654664283742	4.78124437117684	4.70328265499046	5.00264523114305	5.08762966193579	5.13360930261172	0.728260796162863	0.0544717163140585	0.299727719287143
Merged-chr11-70672075-2	chr11	70671575	70672575	+	828.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 17 of 23)	exon (NM_178116, exon 17 of 23)	-2659.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	3.65332019759799	3.85586754257243	3.82271000733957	3.53634099172452	3.63333023768523	4.28287891629334	0.233109788999779	0.696312579174595	0.919440123947475
Merged-chr2-84626547-4	chr2	84626049	84627049	+	884.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22931.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.38878144870124	6.68962118475911	6.75615087974125	6.67223156465726	6.62753546866841	6.79980097806736	0.128285050048748	0.634961063657898	0.896393504194572
Merged-chr4-53826001-4	chr4	53825502	53826502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028053)	promoter-TSS (NM_028053)	-43.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	6.63393068369379	6.62116780558509	6.30645561188148	6.44852421352106	6.22037683631299	5.81375487520737	-0.553118319522657	0.0798899204316157	0.373768934454534
Merged-chr2-4389506-4	chr2	4389016	4390016	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-11460.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.92926900712217	3.55749120522268	3.6079275173913	4.29671252182706	4.23643628425676	4.20301088267446	1.60762183132254	0.00286615692413356	0.0406281406036295
Merged-chr18-9758489-1	chr18	9757989	9758989	+	708.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	50841.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.11960020244568	4.04668245500994	3.87704501414275	3.44677795588342	3.18168096695115	3.74399288471507	-1.96236877031511	0.00157125576063835	0.025635499868862
Merged-chr4-109666872-4	chr4	109666351	109667351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301368)	promoter-TSS (NM_001301368)	-95.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	6.91249661768075	7.15374886875468	7.09136163636785	7.63652266016638	7.58588977020157	7.60656925521152	0.820031506388145	0.000421753518427698	0.0091747102644005
Merged-chr4-62360528-4	chr4	62360056	62361056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175090)	promoter-TSS (NM_175090)	40.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	8.23504116597965	8.56852923326065	8.08783566151029	8.19298871146556	8.50755582021737	8.15776177436896	-0.0249350355634871	0.919438417655701	0.982034101943453
Merged-chr8-105344287-2	chr8	105343787	105344787	+	646.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	3683.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	5.57599958646667	5.27462331883962	5.34919039901309	5.82276414999325	5.68510423017135	5.44440567894529	0.490920843270852	0.152722824953216	0.521108866509767
Merged-chr7-28932679-4	chr7	28932190	28933190	+	916.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	29642.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	3.72573639876816	3.30135096452937	4.03016683303848	3.43182665111195	3.34968377228676	3.68729721469081	-0.765636219103051	0.228928631682007	0.624363092366069
Merged-chr1-62724676-4	chr1	62724174	62725174	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21357.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.95285456314695	3.98133757036014	3.70089073874499	3.38455580418172	3.53126941049871	3.66454463128015	-1.24117129924084	0.0287106604876853	0.203135245729856
Merged-chr11-94210291-4	chr11	94209790	94210790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1164.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	7.40811109509341	7.86993764469595	7.781339030365	7.27039167003843	7.23642883627628	7.15267104216072	-0.70205486399306	0.00504447994298137	0.0615907684659712
Merged-chr19-34152109-4	chr19	34151607	34152607	+	917.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024204, intron 1 of 5)	intron (NM_024204, intron 1 of 5)	13934.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	3.05626029021408	2.94607946519331	3.1499557592776	3.19726189872543	3.56788733384399	3.33790464895904	1.41813098336686	0.0314366973599394	0.214783004981664
Merged-chr13-95890337-4	chr13	95889843	95890843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	1579.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.53186521451035	6.35266081751162	6.22654076947287	6.7549370471736	6.91799737377008	6.79142990444016	0.702256581407658	0.00869291497420516	0.091385984734512
Merged-chr9-63614313-4	chr9	63613818	63614818	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11672.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	7.54995017595939	7.63514813028333	7.27777248807231	7.79768858707647	8.14477020448564	7.24747826848704	0.421885691811742	0.158611410886898	0.530413080824572
Merged-chr6-34876816-3	chr6	34876358	34877358	+	944.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135611, intron 1 of 3)	intron (NM_001135611, intron 1 of 3)	1207.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	5.87621244089674	5.77605776464548	5.79277699754259	5.32848189568706	5.24315850289703	5.2506501777175	-1.02927634174351	0.00148172276487713	0.0245014284220779
Merged-chr4-150089358-2	chr4	150088858	150089858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	1855.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	4.80979777360389	5.15246685222472	4.72305524302998	5.06735117954471	4.85165594066103	4.61782662371536	-0.117430845797794	0.780286197620579	0.945976443458414
Merged-chr17-24470274-4	chr17	24469781	24470781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025954)	promoter-TSS (NM_025954)	-192.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	7.94176538313425	8.05775842980438	7.67824936714496	7.74662795872178	7.79817341586343	7.61106590877188	-0.263792868052326	0.256222221276172	0.653254411506125
Merged-chr18-83981369-4	chr18	83980873	83981873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105189.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.36494039286096	5.63323580048378	5.23940552375115	6.03271245272842	6.19548526593471	5.44461463332492	0.928589789567571	0.0131927674242807	0.121971532426616
Merged-chr7-101883262-3	chr7	101882777	101883777	+	865.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1952.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	5.36876586386793	4.96274582287534	5.22636279561725	5.22139570912523	5.43087963700236	5.22503180315653	0.216677897587088	0.556395815797984	0.863603167403937
Merged-chr7-102024647-2	chr7	102024147	102025147	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-6492.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	8.00613839573723	7.8488121286485	7.87447612956191	7.95268021223169	8.10295985009829	8.02230304759127	0.16556709905648	0.438123296408717	0.800419903410376
Merged-chr3-84039400-4	chr3	84038918	84039918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172681, intron 1 of 34)	CpG	743.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	6.49883134966073	6.96792440327143	6.71703262964682	6.7730511521434	6.60256140031186	6.4653325898456	-0.192189658499698	0.498394251058568	0.833865667012175
Merged-chr2-144600032-4	chr2	144599510	144600510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025314)	promoter-TSS (NM_025314)	57.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	7.44185372149283	7.62774933692703	7.06086865283727	7.30800571195926	7.26866886439398	6.76676039461699	-0.385498604353124	0.184693593667729	0.568503887251358
Merged-chr7-80202115-4	chr7	80201607	80202607	+	963.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	3666.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.29261666851056	6.50498146083597	5.949071849926	6.38444186751263	6.39931134544998	5.53930506729943	-0.162519620897993	0.666339153911248	0.908141259539205
Merged-chr6-17286525-3	chr6	17286054	17287054	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	5369.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	3.42883868539594	3.15541562799077	3.37662878249411	3.44176989838075	3.12065419167728	3.15766571601739	-0.305791061036854	0.635181974189937	0.896439353901449
Merged-chr7-112000322-4	chr7	111999795	112000795	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23211.0	NM_133758	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	3.65181995210762	3.69918786011361	3.96910554714058	4.69462537185973	4.98675552396112	4.43430382158308	2.77111190380733	9.88977139882191e-08	7.08182528875365e-06
Merged-chr9-35040780-2	chr9	35040280	35041280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75948.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.79443411265631	3.8145802539578	4.1914313935821	4.22454223439443	4.05280739246418	4.61061581728234	1.05378713685829	0.0455496055330723	0.2694697175397
Merged-chr4-120406538-4	chr4	120406038	120407038	+	913.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013883, intron 1 of 16)	intron (NM_013883, intron 1 of 16)	1257.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	5.65875645546504	5.76188189180034	5.62244857051032	5.94997927661757	5.89371423251752	5.71301441368262	0.31689627965797	0.305810323010903	0.701883343337569
Merged-chr13-45265002-4	chr13	45264501	45265501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124741.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.18425379870884	5.2453369179675	5.24274856157656	4.62550601518235	4.27546765310015	4.75793864770358	-1.52516419338014	0.000209408722843872	0.00519634590551855
Merged-chr18-34779111-2	chr18	34778611	34779611	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2103.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	5.19534995591808	5.11858892476469	5.20158803138838	5.57188618962013	5.58012900299267	5.59600534805008	0.807867385618111	0.0152823640228072	0.13434917544741
Merged-chr3-59344314-4	chr3	59343821	59344821	+	804.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162884)	promoter-TSS (NM_001162884)	-65.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	3.55451668825711	3.46185215943465	3.32412537793905	3.26489781793947	3.12090332279108	3.39601528140234	-0.783267603842874	0.206551843453155	0.597141275948059
Merged-chr7-127852984-2	chr7	127852484	127853484	+	827.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11176.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	3.07057719807128	3.08360652201804	3.45863635722237	3.3004360842742	2.93727379458519	3.26427238287704	-0.152979705930531	0.822368105040395	0.958041123079214
Merged-chr12-52328220-4	chr12	52327739	52328739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152370.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	5.66089112229774	5.91221867166578	5.55318029227746	5.83834927206214	6.00569077427256	5.49359946400049	0.152123997380712	0.656468003166716	0.904654860421566
Merged-chr2-167844760-2	chr2	167844260	167845260	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87567.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.23909036095966	5.30738703697973	4.9450998090775	5.52387727212801	5.2122077441086	5.2631505912888	0.310749246614098	0.400275645423095	0.776454470648814
Merged-chr1-191125981-4	chr1	191125481	191126481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	27567.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.86121093519498	5.58292426259345	5.56396673870666	5.96469595612814	5.89721720661676	5.37354554395667	0.184914527019837	0.599011375343646	0.880902871165758
Merged-chr15-100679242-3	chr15	100678759	100679759	+	895.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	8661.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	6.75748505849774	6.42197593881203	6.76044192523993	6.49397539273417	6.90353614260331	6.66246605761061	0.0836114650192882	0.768955831083542	0.942983923980385
Merged-chr5-138686070-4	chr5	138685568	138686568	+	956.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63209.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	2.90714499152031	2.86502279773174	3.09030030832491	3.35025090832499	2.87451577235581	3.27602011186231	1.00927300200809	0.152840467545534	0.521317877578553
Merged-chr17-5196094-2	chr17	5195594	5196594	+	903.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	201020.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	5.15491147255382	5.25002843581035	5.21544259237151	5.19453966835853	5.01916552509381	4.8058940046817	-0.382449192128956	0.304526449908182	0.700969682849711
Merged-chr2-71663177-2	chr2	71662677	71663677	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-56240.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	5.27786875183973	4.97968462969368	5.22636694812902	5.47253419586294	5.77681365335682	5.81720922649331	1.03062215182055	0.00336733889866565	0.0458200384432005
Merged-chr12-113031598-4	chr12	113031089	113032089	+	967.3500369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	ORR1F|LTR|ERVL-MaLR	17081.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	5.19469896661138	5.01344745082434	5.50095372103091	5.27201617376941	5.17535977297062	5.14361949907507	-0.0808744913288085	0.827544856504514	0.959467071709035
Merged-chr5-62763341-4	chr5	62762839	62763839	+	942.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	2838.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.81130322067667	6.84496688098951	6.51416215266693	6.7746213294162	7.08529173874877	6.47856329455008	0.121621450955881	0.679579734865291	0.913926664382454
Merged-chr18-84849119-4	chr18	84848618	84849618	+	947.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2220.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	6.43568195107553	6.5003895816134	6.25783754803931	5.77735005567072	6.13494778297475	5.9884398065814	-0.715929004451248	0.0159314553086123	0.138588442505197
Merged-chr4-139193765-5	chr4	139193155	139194155	+	994.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271405)	promoter-TSS (NM_001271405)	-456.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.81405689283857	7.85747463927425	8.03508217042478	8.21802961309585	8.264682904131	8.392334218315	0.55196357987676	0.00995699595716552	0.100121053728559
Merged-chr9-32478919-4	chr9	32478461	32479461	+	999.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	62491.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.91522295812669	6.13227589151348	5.98887808799788	5.69800068745024	5.81771434450464	6.17669586919973	-0.200740866271798	0.5264729545723	0.849462121466976
Merged-chr10-50612206-4	chr10	50611715	50612715	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	19546.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	3.81448862362796	4.0803575150863	3.80127410603705	3.8935131798797	3.99464404995507	3.87191932908545	0.040762679619796	0.937280574082475	0.986057836872162
Merged-chr14-31159479-2	chr14	31158979	31159979	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 16 of 68)	intron (NM_138672, intron 16 of 68)	9162.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	4.82119018289768	4.17408707506809	4.54699493814597	4.75305105397812	4.53811784963695	4.69471349122756	0.282618167837087	0.543052298724337	0.85747377786695
Merged-chr9-104057312-3	chr9	104056803	104057803	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025692, intron 3 of 11)	intron (NM_025692, intron 3 of 11)	5818.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	4.10915902988611	4.23901431955609	3.92576603953151	3.33950334338174	3.25052764879577	3.94740031097011	-1.86833796246891	0.00398886319888691	0.051821267768272
Merged-chr4-3779534-2	chr4	3779034	3780034	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56121.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	4.49784008079942	4.33230572562573	4.53421967247909	4.2394386376911	4.33238270777021	4.71061311203041	-0.0537618753971017	0.906460890773289	0.978739219832012
Merged-chr7-141563247-3	chr7	141562746	141563746	+	682.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	1066.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	5.62503700787691	5.66681313543539	5.82396644889373	6.0075457778212	5.76450063341564	5.9328710966018	0.358921404101559	0.247025904712686	0.644045601901006
Merged-chr1-53775263-3	chr1	53774739	53775739	+	888.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	9976.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	6.58619678922019	6.72640991032276	6.99280609474024	6.69888445555693	6.9168100114328	6.94535842634356	0.135574464821811	0.613701965919547	0.887300906025089
Merged-chr8-119833156-2	chr8	119832656	119833656	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	7423.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.79438380268774	3.50920596137378	3.69141327380027	4.02264555864855	3.38218277573368	4.18404112862923	0.739958144500791	0.232800229542724	0.629066394953106
Merged-chr11-98948102-4	chr11	98947580	98948580	+	958.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8369.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.61834069053471	6.52490435340859	6.31048574000359	6.62036237878668	6.53919110948268	6.3297960283943	0.0151025721556867	0.956485637464679	0.989887454023164
Merged-chr8-76901143-2	chr8	76900643	76901643	+	552.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028579)	promoter-TSS (NR_028579)	-522.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	5.63509879869179	5.90117447932912	5.19530700323375	5.45624209612569	5.16913407309072	5.22573654564069	-0.640916235242526	0.091091915102254	0.401694635212696
Merged-chr17-15826640-4	chr17	15826152	15827152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-66.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	6.21618192448345	6.43921866580978	6.08271592068131	6.31323257850138	6.26002186545557	6.25160349945068	0.0181593892465426	0.949262912463836	0.988169196639905
Merged-chr6-113333852-2	chr6	113333352	113334352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133926)	TTS (NM_133926)	6876.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	6.80183951880807	6.76560423408967	6.94943295440908	7.13394686265123	7.10046236518097	7.11195269056631	0.428444830067473	0.0750735507150594	0.360790112504254
Merged-chr15-50839749-2	chr15	50839249	50840249	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	49300.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.18762157259143	2.91260345996107	3.17984613631251	3.25129442079571	2.98338394514784	3.51726024627744	0.688832594906728	0.317999434351312	0.711817713144205
Merged-chr10-81134449-4	chr10	81133940	81134940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1831.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	7.49430660444952	7.24076347463558	7.18216435751636	7.56191397614853	7.63111840962433	7.52914844529198	0.379382189183989	0.10787281300327	0.438671801643296
Merged-chr17-55960952-2	chr17	55960452	55961452	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028381, intron 2 of 7)	intron (NM_028381, intron 2 of 7)	-1551.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	2.88245526024007	2.71011235444842	3.03100653157695	2.91716198079735	2.69308330084065	2.86890793688158	-0.246379694783175	0.734629430497959	0.932557032428793
Merged-chr15-4728408-3	chr15	4727907	4728907	+	782.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	1197.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	6.18183433441258	6.47166496453092	6.42704380444896	6.72403150764634	6.84327420288812	6.57652139864543	0.579813009749573	0.0341752599869351	0.22621532327018
Merged-chr9-58270202-3	chr9	58269663	58270663	+	754.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	16999.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.22713854845984	6.2193678638725	5.66276177578904	6.49100118220641	6.36429451404771	5.97680107224649	0.38041673368432	0.258994623252779	0.656583244140075
Merged-chr2-152805068-4	chr2	152804573	152805573	+	991.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23416.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	7.23969814989449	7.29568319737464	7.26625210077994	7.14600947824228	7.13614420529082	6.78066398021971	-0.338591497012658	0.174235850975336	0.553403610743454
Merged-chr15-84989168-2	chr15	84988655	84989655	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1184.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.57349954503955	4.46394084263127	4.47436656111837	4.54439233634355	4.68667563100574	4.49852954802879	0.195984418712502	0.642120946924576	0.89935194586174
Merged-chr16-22436306-4	chr16	22435796	22436796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358428, intron 2 of 12)	intron (NM_001358428, intron 2 of 12)	2072.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	3.85759315949936	3.46651505519848	3.88360964087735	3.58977655101868	3.66948383405442	3.65245304168454	-0.359401609962054	0.527499891241529	0.849981815109223
Merged-chr3-108856123-4	chr3	108855633	108856633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15631.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.58611915308134	6.14293506754289	5.78035735821988	6.50952456764947	6.50825545754931	6.15131586560708	0.296811274250665	0.38682794478345	0.767242114725069
Merged-chr6-125254296-4	chr6	125253807	125254807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-11218.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	6.98365780373219	6.9274824912963	7.11329100158005	7.01908758405551	7.22975071009004	7.15864432641431	0.20627045724189	0.395149544057874	0.772579826044138
Merged-chr8-106535031-2	chr8	106534531	106535531	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007665, intron 2 of 15)	intron (NM_007665, intron 2 of 15)	24179.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	2.33269884244319	2.60051311741374	2.55203817900206	2.33102153677626	2.26674571403709	2.43654643071589	-1.01003648448916	0.230773881685816	1
Merged-chr10-68136101-3	chr10	68135575	68136575	+	725.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142651.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.16190298004553	7.25004570244397	7.10345252868887	7.34634353374615	7.31014877727753	6.92502048051486	0.0613191872457752	0.808623068081163	0.954721853010197
Merged-chr15-98977503-4	chr15	98977016	98978016	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8449.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	5.54597288234683	5.42880509090965	5.57642016928455	5.54270956918631	5.35127312881728	5.31185336288566	-0.2066456428911	0.536118179572628	0.853881313972766
Merged-chr5-138731989-1	chr5	138731489	138732489	+	643.0	f1_balb.idr	Intergenic	RMER6BA|LTR|ERVK	-23092.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	2.95201637822233	2.61274830775242	3.29896560410721	2.52735958053428	2.38968691386939	2.63539703168053	-2.69870992474036	0.00274894018830021	0.0393893258460624
Merged-chr5-143490169-4	chr5	143489678	143490678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 9 of 14)	intron (NM_144915, intron 9 of 14)	25685.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.11075836336485	6.4232256140374	5.96485132737112	5.74457600520903	6.26616728250753	6.11812639382446	-0.207651978115147	0.528027542444267	0.850338031541205
Merged-chr14-99179675-2	chr14	99179175	99180175	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_029320, intron 11 of 17)	PB1D10|SINE|Alu	-79905.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	2.55469710497113	2.71295531413709	2.48243959770813	2.54716161712362	2.38121516881516	2.68436929355488	-0.298799219238318	0.711152640979369	1
Merged-chr14-66281029-4	chr14	66280533	66281533	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172498)	promoter-TSS (NM_172498)	19.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.15973188640946	6.66948042071971	6.23198866272285	6.67433924125862	6.62802483050746	6.66285133970502	0.433599762963933	0.139485972974103	0.499084106249493
Merged-chr3-138537551-2	chr3	138537051	138538051	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313980, intron 2 of 7)	intron (NM_001313980, intron 2 of 7)	10283.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	3.58907123630181	3.42132113408814	3.77316839901394	3.56112190648882	3.46641318756053	3.42401829756516	-0.392441265274283	0.500437460399244	0.834978949366358
Merged-chr4-3659433-4	chr4	3658931	3659931	+	938.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	2925.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	6.97342748335339	7.02368090485028	6.45509312098329	7.04644980272994	7.13118802185932	7.02146567576979	0.325653489365255	0.240790800680928	0.637807804054095
Merged-chr2-167467557-1	chr2	167467057	167468057	+	692.0	f0_balb.idr	intron (NM_001304542, intron 10 of 15)	intron (NM_001304542, intron 10 of 15)	-25088.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	4.54300363982281	4.09702490744645	4.25522317213784	4.05109149746515	3.99968671849059	3.93283740311877	-0.894337909822964	0.0724475633764895	0.353519637193932
Merged-chr6-116196597-2	chr6	116196097	116197097	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR21|LTR|ERVK	-3223.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.30468187915001	3.01068054303567	3.35650100625855	3.35016768569012	3.12478675059902	3.37316825022249	0.2209322048543	0.733360680741658	0.932052212786391
Merged-chr13-111488845-4	chr13	111488295	111489295	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 1 of 12)	CpG	1332.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	7.29531446395954	7.46779276589385	7.2196359949527	7.57905263132569	7.36359370313123	7.50759270266354	0.215758159443936	0.360870632815833	0.746938274913623
Merged-chr3-104794132-4	chr3	104793641	104794641	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008619)	TTS (NM_008619)	5107.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	5.95087422780209	6.19611346020974	6.15620744745712	6.22430082662116	5.8276677739141	5.89855226073235	-0.188009139831201	0.543930617772829	0.857551302506722
Merged-chr5-127617462-4	chr5	127616959	127617959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133895)	promoter-TSS (NM_133895)	-67.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	7.50375418595608	7.65302943726032	7.47390709442898	7.39931439109549	7.3139723699476	7.32665365605323	-0.297451063578816	0.188950398565762	0.574452291419487
Merged-chr12-110778012-4	chr12	110777519	110778519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	40087.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	5.80351597287973	5.74617758375927	5.39851020704246	5.6874194838953	5.69578565761578	5.39777958482076	-0.115803010433553	0.733595960744736	0.932153005448542
Merged-chr7-102013048-2	chr7	102012548	102013548	+	886.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 21 of 24)	intron (NM_133947, intron 21 of 24)	5107.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	4.27258180390451	4.48866797265431	5.03594417896197	4.48535539972241	4.47621017472575	4.77230119199268	-0.118393695822986	0.805300580252254	0.953840812813326
Merged-chr10-69306393-4	chr10	69305876	69306876	+	704.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46536.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.12992218141533	3.75795937928033	3.9878353869197	4.3732869986806	4.59309733161529	4.70434873676404	1.61695739861535	0.00103296219111143	0.0184690936748765
Merged-chr11-102286785-2	chr11	102286285	102287285	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028076, intron 2 of 3)	intron (NM_028076, intron 2 of 3)	1846.0	NM_001302505	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	2.52072827896876	2.26537999513063	2.63924844523997	2.51205897828298	2.46142891964165	2.71246211640885	0.4799405229223	0.563829075948526	1
Merged-chr13-106998795-4	chr13	106998293	106999293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	23321.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	4.13049448122589	4.04896241716433	4.04282206506782	3.94373388747797	3.89413254937761	4.1573244502074	-0.24145826195495	0.623245679766884	0.891344246843871
Merged-chr12-110979121-4	chr12	110978596	110979596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-56.0	NM_001361916	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	6.4797512521231	6.44003531700156	6.1403962593873	6.56462852537813	6.1903632516241	5.63979681737814	-0.281018808597408	0.429077834720293	0.795570481157701
Merged-chr4-128664170-4	chr4	128663642	128664642	+	870.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	9440.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.86050762992307	4.59483812338056	4.85610998500796	4.70111957582258	4.39400958025768	4.88544009045752	-0.256037332271117	0.553278987757932	0.862238984416102
Merged-chr2-164792541-4	chr2	164792060	164793060	+	950.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133240)	TTS (NM_133240)	6539.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	4.34908596528617	4.18036303460261	4.4207399592515	4.68197266391042	4.67643578597059	4.0480259337192	0.494932138789783	0.314362699888498	0.708710692372488
Merged-chr15-58050252-3	chr15	58049723	58050723	+	750.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 3 of 3)	intron (NM_009572, intron 3 of 3)	-15929.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	3.1223585334123	3.21612614412902	3.29734668742617	3.26824719759713	3.45675630820373	3.13384778482919	0.369537333571362	0.562356976037656	0.86571315867742
Merged-chr9-118082941-4	chr9	118082463	118083463	+	762.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026442, intron 2 of 3)	intron (NM_026442, intron 2 of 3)	42441.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	2.65115100657786	2.68060539269241	2.85138008383246	2.6708498094362	2.79124692067921	2.98085642453274	0.467501946755759	0.525749350117821	0.849127238910141
Merged-chr2-131083130-2	chr2	131082662	131083662	+	648.5	f0_balb.idr|f1_balb.idr	intron (NM_011426, intron 5 of 20)	intron (NM_011426, intron 5 of 20)	3603.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	3.97535005614685	3.87726688040887	4.07687127268881	4.3174840530924	3.85795502035659	4.40411483517233	0.661889621679221	0.202071775864897	0.591773948258361
Merged-chr10-63021654-3	chr10	63021151	63022151	+	771.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079824, intron 1 of 9)	intron (NM_001079824, intron 1 of 9)	-1351.0	NM_001359260	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	3.24270418616078	3.32586429681348	3.41618062257239	3.40716764057557	3.15490312874746	3.43299278871287	0.0177234375226291	0.977066622522304	0.994771164142869
Merged-chr15-81021609-4	chr15	81021105	81022105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43840.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	5.45348592320241	4.77002367572886	5.30841878687967	5.02289696044414	5.15043844263737	5.28065002024052	-0.114863853591617	0.777919371664228	0.945257566403653
Merged-chr4-6445283-4	chr4	6444788	6445788	+	899.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	8983.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	3.63505998997374	3.76017377095316	3.66178432654939	3.6539492425356	3.93434899084327	3.67859064559282	0.271168443847433	0.62044408372392	0.890117266133898
Merged-chr15-76607658-4	chr15	76607171	76608171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164173)	promoter-TSS (NM_001164173)	-80.0	NM_001164173	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	4.81518132031037	4.52249365888269	4.60735532141437	4.96042954029548	4.59568569302705	5.00969488014354	0.463851810283705	0.274851781147403	0.672227947612154
Merged-chr5-121594097-4	chr5	121593599	121594599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-275.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	7.24807826839276	7.65493787706811	7.307263081815	7.36535238198743	7.68485967873687	7.27065324924412	0.0586483743346726	0.824833594458991	0.958596193929081
Merged-chr9-37352214-2	chr9	37351714	37352714	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3822.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	2.24792895585479	2.21724710603104	2.52714174175788	2.29584580440723	2.21280915978569	2.41583825389308	-0.168394137754369	0.844373254003646	1
Merged-chr4-156255155-4	chr4	156254651	156255651	+	947.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355709, intron 1 of 10)	intron (NM_001355709, intron 1 of 10)	191.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	3.3349635997267	3.15128140191177	2.86480463639661	3.06583967402985	3.01134448359949	3.12920487009874	-0.306398442967364	0.660506351217235	0.905981809862142
Merged-chr3-139074871-4	chr3	139074346	139075346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	CpG	355.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	6.76994964855731	6.67279934414714	6.74154926415155	6.77308617883626	6.52509396882227	7.1567895116433	0.164285327036972	0.56765739921753	0.868226421552338
Merged-chr15-11995300-7	chr15	11994808	11995808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 1 of 4)	CpG	699.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	7.64181595624498	7.77196159206824	7.56504911296778	7.74594963419213	7.52887504336607	7.35730995888954	-0.155951351477882	0.5128309696216	0.842142798618015
Merged-chr9-66593147-4	chr9	66592668	66593668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-53.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	7.72234351948377	7.73441900795517	7.81861482163643	7.64307714870751	7.76269631870117	7.62150102676746	-0.109413682842212	0.614563348709355	0.887509542539593
Merged-chr5-36575470-3	chr5	36574990	36575990	+	996.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	6907.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	7.05013378874086	7.20128158021101	7.16768198061691	7.49783857060443	7.8037769399757	7.24998754875292	0.602701787983574	0.0200821652327323	0.161886921593218
Merged-chr9-100454372-4	chr9	100453868	100454868	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32105.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.30225762410821	5.54739976235056	5.25805603710531	4.87286113960786	4.68587065736805	5.09236223636948	-1.05388699230827	0.00563688391022053	0.0666620006255869
Merged-chr14-61707200-1	chr14	61706700	61707700	+	665.0	f1_balb.idr	Intergenic	Intergenic	-24827.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.86656458526942	3.74174004926328	3.81839154294945	4.60692354886983	4.67547347211018	4.3936507014761	2.17144918506883	1.03954766389241e-05	0.000414733694862936
Merged-chr3-103927498-4	chr3	103926913	103927913	+	687.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	13293.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	5.11286472157958	5.4062970477361	5.40162655154297	5.39141796150229	5.3364151480367	5.37501735012162	0.110451418719287	0.750444814976812	0.937550343416037
Merged-chr11-75586433-4	chr11	75585931	75586931	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1648.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.52850466202442	5.65024435689066	5.42672531202213	5.60521347302608	5.56525041817374	5.54939847886735	0.0533442506454047	0.86893187992054	0.969755809171886
Merged-chr5-88591818-2	chr5	88591318	88592318	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	Lx5b|LINE|L1	8305.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	2.98216557111202	3.13553854377651	3.18194233230203	3.27063421333132	3.17853468949731	2.88301814348281	0.109552651473878	0.873296775130528	0.97040331531529
Merged-chr13-111808936-2	chr13	111808436	111809436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	57.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	8.10982621733625	7.31330014217309	7.30222158027025	7.73737104345059	6.98109006487973	7.40491108222519	-0.333943550489937	0.324614946845266	0.717544999689449
Merged-chr4-40949495-2	chr4	40948995	40949995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029814, exon 2 of 8)	exon (NM_029814, exon 2 of 8)	942.0	NM_029814	76959.0	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	4.27887185164384	4.21447413705148	4.40064953609624	4.11336896769519	4.27976086622397	4.15817792571168	-0.283944146791269	0.539626265328535	0.856052391666911
Merged-chr12-110417415-4	chr12	110416868	110417868	+	952.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-29811.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.40634468235778	3.23752084423985	3.51766583685959	3.52681783526111	3.36629301998001	3.31106816290789	0.0740282081494469	0.902643154750207	0.977580005571747
Merged-chr13-67375199-1	chr13	67374699	67375699	+	858.0	f1_c57bl6.idr	intron (NM_001001186, intron 1 of 3)	intron (NM_001001186, intron 1 of 3)	564.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	5.39635108473444	5.35752046306029	5.31409907161049	6.06377970893129	6.44291932577529	6.24656299523279	1.62225875015987	3.18400234712056e-07	1.97859945705159e-05
Merged-chr2-101782934-1	chr2	101782434	101783434	+	583.0	f1_balb.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14773.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	5.56437262791995	5.58573706534026	5.41963819375167	5.77092281571641	5.82131307231202	5.81691817762391	0.498467516603547	0.111896454595885	0.446815084509229
Merged-chr4-133847968-3	chr4	133847461	133848461	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	26770.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.06666171171522	3.79001078682587	4.49730555844814	6.2760261142177	6.20989238322053	5.8061740026601	4.89067296086215	1.47391899781404e-20	1.06497779485211e-17
Merged-chr5-135465358-2	chr5	135464858	135465858	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-70812.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	4.96316547056448	4.96569932422194	4.65809741635677	4.70294884948925	4.4213762237337	4.87952849390822	-0.481814035416003	0.256594227852432	0.653682511929703
Merged-chr13-60710154-3	chr13	60709653	60710653	+	995.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	RSINE1|SINE|B4	76211.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.67518351576828	4.64686773996061	4.59600001341499	4.18201515356072	3.79994555020826	4.23429197055433	-1.53500061351791	0.00136827189900719	0.0230467951766376
Merged-chr19-41274665-3	chr19	41274086	41275086	+	870.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 16 of 16)	ORR1A4|LTR|ERVL-MaLR	-10582.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.97580430239213	3.12327260099271	3.20186310242363	3.00749316017521	3.35307726545079	3.53641544261053	0.882066100496654	0.191340058496496	0.577915466365166
Merged-chr11-121743362-4	chr11	121742862	121743862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40935.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.91728634398776	7.72432959157968	7.39534561912753	7.59374587760432	7.66784638915689	7.38476173303576	-0.210137746874648	0.408395110080748	0.782032951304577
Merged-chr7-102242476-2	chr7	102241936	102242936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	MIRb|SINE|MIR	7682.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.24582578634084	5.47225930152896	5.86628104431436	5.37761666061598	5.59313128957238	5.78954050148245	0.0958189759420057	0.794338601643908	0.950669922554279
Merged-chr2-162932814-2	chr2	162932314	162933314	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026499, intron 2 of 5)	intron (NM_026499, intron 2 of 5)	1306.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	5.66629451067869	5.70758550396146	5.34223946719245	5.39000098015441	5.27343776873279	5.34194193103898	-0.500679964796923	0.142101170996388	0.503232645397833
Merged-chr15-84770326-4	chr15	84769835	84770835	+	851.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205334, intron 12 of 12)	intron (NM_001205334, intron 12 of 12)	-50069.0	NR_040347	328576.0	Mm.400211	NR_040347	ENSMUSG00000116396	Gm20556	A430075N02	predicted gene, 20556	ncRNA	3.24340716314857	3.60341196247763	3.34823508310149	3.88773070692803	3.99108425224373	3.6584127818702	1.54765301735217	0.011073783745927	0.108034634532899
Merged-chr11-98400351-4	chr11	98399875	98400875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033537, exon 1 of 8)	exon (NM_001033537, exon 1 of 8)	115.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	5.70030395934504	6.25739708682318	6.21383692431602	5.94575900147112	5.77531440868417	5.83039120976293	-0.397240341432926	0.228666449400628	0.6238934295743
Merged-chr16-87676425-3	chr16	87675950	87676950	+	818.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-22504.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.85287356421322	3.09833557760962	3.01097822315346	2.77188412848276	2.7288214840068	2.90573467475229	-0.961878690306224	0.178789721901883	0.560118041416111
Merged-chr13-60753452-1	chr13	60752952	60753952	+	668.0	f1_c57bl6.idr	intron (NM_134062, intron 23 of 26)	B3|SINE|B2	32912.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.02505390799524	2.05973914552058	2.25530059419211	1.92291442907808	1.78731656900588	2.00398273699932	-1.8363406924596	0.0735688651887738	1
Merged-chr14-75728820-2	chr14	75728320	75729320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 13 of 22)	intron (NM_177381, intron 13 of 22)	25673.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	4.51029041218389	4.45422799597948	4.26645170281521	4.63308409709541	4.43617299551908	4.28783759676611	0.109076681853705	0.807968909605445	0.954583809755663
Merged-chr17-27037828-2	chr17	27037346	27038346	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8587.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	4.19339053091282	4.39236086504676	4.58234591011755	6.88782972186873	7.01818105904061	6.29957724074061	5.06125149486163	5.81521127299316e-28	2.01613374834673e-24
Merged-chr16-57555912-4	chr16	57555425	57556425	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	6683.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.05237140044265	6.95642536099979	6.70874939251051	6.92551617268456	6.86824935623252	6.59540098025417	-0.169488763423121	0.524965706421578	0.84884700169621
Merged-chr13-60895530-4	chr13	60895013	60896013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001145801, exon 4 of 4)	3' UTR (NM_001145801, exon 4 of 4)	1934.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	6.49641497695565	6.66286854010789	6.41303793227993	6.95763399754922	7.14175758376982	6.19160919172647	0.481551830770102	0.14974227826921	0.516223009447192
Merged-chr11-109347782-4	chr11	109347254	109348254	+	917.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027883, intron 1 of 1)	intron (NR_027883, intron 1 of 1)	887.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	5.07391328705692	4.68521343151982	4.89795233895448	5.55668539877095	4.94522238262865	5.03878159430884	0.662329611328889	0.114251591048453	0.451407710729328
Merged-chr7-89411516-4	chr7	89411027	89412027	+	989.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7161.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	3.9351607535772	4.20581215276897	4.13314026530895	3.28331522647392	3.23140617775685	3.56053477677082	-2.77198324920663	9.84687926140526e-06	0.000395052617928163
Merged-chr14-69813397-3	chr14	69812904	69813904	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7859.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	3.67618261380224	3.67367554859893	3.56595894178926	3.48478465553328	3.52618450777149	3.63634722978943	-0.34055690292857	0.540927349067882	0.856582937501506
Merged-chr2-165947774-4	chr2	165947294	165948294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44843.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	8.10027773522975	7.98988589107725	7.8147498509978	7.87161787132084	8.27730271656186	7.54918098876473	-0.0439660246005916	0.871204560252735	0.970222087171093
Merged-chr7-80203730-4	chr7	80203219	80204219	+	960.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	5278.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.6257597459131	6.7080398760039	6.26423533169183	6.28128456258219	6.38131612873572	5.7489902094106	-0.610084578000329	0.0630926684703343	0.326907949316868
Merged-chr18-10030034-4	chr18	10029543	10030543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360884)	promoter-TSS (NM_001360884)	106.0	NM_001038589	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	7.38462190049265	7.71042413376821	7.2479410867419	7.23698085278967	7.3529415632262	7.16969689439605	-0.311472626508913	0.219583477035588	0.613803942526193
Merged-chr9-56105368-3	chr9	56104898	56105898	+	794.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	15422.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	3.94557479603109	3.7732284228361	4.12677306002993	4.02777146926565	3.64219612852674	4.23654429565875	0.0967145659163134	0.860662480689264	0.967588655430938
Merged-chr1-165763030-4	chr1	165762532	165763532	+	891.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-726.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.77252970967352	7.04569780090944	6.91005092290621	6.6452491200625	7.06812993153914	6.57030503386924	-0.186572358721665	0.510511028446501	0.84091065336982
Merged-chr6-136714328-4	chr6	136713813	136714813	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145067, intron 19 of 25)	MIR3|SINE|MIR	-52420.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.58505513658908	3.38863182293156	3.24451398106572	3.84897964070306	3.68573623256527	3.67168094133257	1.12251563184128	0.0606963846915902	0.319101837203376
Merged-chr13-55622189-3	chr13	55621665	55622665	+	921.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-840.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	6.3521211608837	6.82511488404981	6.72415328366801	6.49914364563105	6.57467712176255	6.92478109634545	0.0366624889473885	0.90132367048494	0.977176770690314
Merged-chr11-114569723-2	chr11	114569223	114570223	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-98820.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	4.6819397036089	4.62737402713225	4.59786479280123	5.13506399050823	5.29048415277947	4.94917850575241	1.1155882465321	0.00429660564740494	0.0549004856740279
Merged-chr2-6722112-4	chr2	6721611	6722611	+	876.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-449.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	6.27031337952423	6.33810487241579	6.25379132071082	6.33971689918561	6.60760619008479	6.33419975828402	0.251093477208386	0.365729497389303	0.750755886042233
Merged-chr16-17407779-2	chr16	17407279	17408279	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023348, intron 1 of 4)	ID_B1|SINE|B4	-1465.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	4.54997826470627	4.90583904182449	4.65753588249244	4.60036753475837	4.57857771164199	4.51476293799968	-0.359847665755471	0.393844018695051	0.771958960126358
Merged-chr5-123906655-4	chr5	123906173	123907173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-602.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	7.73975207430348	7.65472161888342	7.26983801054794	7.41320843599837	7.93307399584652	7.29072518264069	0.0165196517637582	0.954299801953092	0.989524436369574
Merged-chr7-110840533-4	chr7	110840017	110841017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025999, intron 1 of 5)	L3|LINE|CR1	3864.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	6.68596906647562	6.47579163550271	6.6103106775784	6.64724358304269	7.02068472590747	6.41364090180865	0.22245173284058	0.448477795061495	0.80725470300829
Merged-chr8-33655467-4	chr8	33654990	33655990	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	2252.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	4.23469470383482	3.96294474455029	4.04014261557073	5.4726993685673	5.56105589732572	5.75616580671707	3.61924077996459	2.96672163071631e-14	7.43502444565307e-12
Merged-chr8-70002725-2	chr8	70002225	70003225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-6341.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	7.49326377400891	7.53585483750776	7.4902275597312	7.67968767481618	8.16662168625582	7.68314532441669	0.529174409019391	0.0351391263940652	0.230043778835356
Merged-chr2-160062684-4	chr2	160062199	160063199	+	854.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46046.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.22386796436032	3.79417096431323	4.12656780635417	3.89966110380743	4.14812528045594	3.95477123138762	-0.140283197438886	0.787657980107303	0.94877064431094
Merged-chr3-31390153-4	chr3	31389665	31390665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-79846.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.52305491716222	5.5466974133979	5.81860460740638	5.70946891852012	5.51130902399069	5.48216510664594	-0.0996573264914414	0.763074665821879	0.941685351953643
Merged-chr5-100590704-4	chr5	100590229	100591229	+	778.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18524.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.75912245409904	5.63859309897308	5.68385881239119	6.23239135412583	6.11779828134159	5.92829456763065	0.721667694414335	0.0171231966152594	0.145624176611049
Merged-chr16-4474626-4	chr16	4474092	4475092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	48483.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	7.93661981238363	8.27001845633001	7.92349969476403	7.86208007016684	8.20355354711956	7.51068131381363	-0.22180662690362	0.416543754198487	0.787467859490367
Merged-chr2-4889705-3	chr2	4889211	4890211	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	8147.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	4.70528869796961	5.04445510433722	4.53824781004938	4.55830506282064	4.60423230454718	4.80847333309792	-0.31651600074484	0.462424104089154	0.815216103160031
Merged-chr11-101463105-4	chr11	101462618	101463618	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	3081.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	4.68029958345041	4.23408792588084	4.55011354997609	4.18554890076537	4.52082415289891	4.27202864936943	-0.40746958699853	0.391977385516477	0.770782330002482
Merged-chr13-92977634-3	chr13	92977138	92978138	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20D|LTR|ERVK	-95666.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.42516132432855	3.57305247019666	3.85135899684084	4.93214942630041	4.66984979486802	4.50858510104057	3.43403813806618	2.23666205369826e-09	2.32055082498908e-07
Merged-chr1-55807154-4	chr1	55806636	55807636	+	991.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124105.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	5.24800140328548	5.39611878560897	5.39325635642613	5.46688749095307	5.51106195602877	5.93637419175984	0.568725939717426	0.104376814396232	0.431016673562367
Merged-chr13-6636699-3	chr13	6636183	6637183	+	878.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	12088.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	2.33422663021216	2.5545760044141	2.6830889317511	2.60278726945397	2.55886380645893	2.69563433763984	0.516336450908004	0.519602253254533	1
Merged-chr6-114869584-3	chr6	114869141	114870141	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	52180.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.91907590891588	3.78017521025802	3.61478682210953	3.60944978001844	3.56963877976999	3.45611447534676	-0.799380876621504	0.156798948224807	0.527644132904867
Merged-chr16-13866422-2	chr16	13865922	13866922	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36723.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	5.56478021045755	5.87328651041913	5.72338506426032	5.67939014042088	5.85862902405923	5.81076853476226	0.10568353449106	0.739122863681901	0.934160003144178
Merged-chr10-68277853-4	chr10	68277360	68278360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	866.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.0332253156253	7.00598968843945	6.9202166158762	7.36716806269582	7.55783096285671	7.35654933926749	0.665082532030385	0.00489472714549712	0.0603378453811147
Merged-chr10-118142546-2	chr10	118142046	118143046	+	585.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162904, intron 1 of 14)	intron (NM_001162904, intron 1 of 14)	759.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.91469889789123	3.93974900020304	3.77561974244494	3.63095480791306	3.52399502614019	4.03730743538737	-0.462007361879255	0.409762459418652	0.783037226945994
Merged-chr6-140767489-4	chr6	140766987	140767987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140602.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	7.07896150854007	7.20079314974958	7.10047046546217	7.3735774857425	7.65791075164952	7.06476186052732	0.403712826265679	0.127450008114062	0.477202010311607
Merged-chr17-83705804-4	chr17	83705285	83706285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171053)	promoter-TSS (NM_001171053)	-378.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	7.90401418144637	7.73750287117098	7.6815143420823	7.93951747417208	7.7443191531016	7.71995137692751	0.0358674094661517	0.873377859119504	0.97040331531529
Merged-chr14-30622914-2	chr14	30622414	30623414	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	PB1D9|SINE|Alu	3294.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.37936160726478	3.6701699486286	3.81778836459676	3.83403135678572	3.60832808684204	4.0249626484909	0.649504177605756	0.262764773378026	0.660745316709973
Merged-chr1-132477422-4	chr1	132476931	132477931	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	64.0	NM_172517	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	6.98207631937101	7.30095007899443	6.92545708755657	7.14678041636971	7.39262596354265	6.86329183347156	0.115630070072458	0.677652319165482	0.913061196228992
Merged-chr10-76442324-4	chr10	76441835	76442835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008787, intron 1 of 41)	CpG	577.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	7.21882527670722	7.71253431784663	7.20502787777188	7.32873622476683	7.46069676400905	7.05286714036604	-0.161547113309158	0.561134830927666	0.865407801976397
Merged-chr2-180041127-2	chr2	180040627	180041627	+	739.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011969, intron 1 of 6)	B4A|SINE|B4	1337.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	6.75208552914081	7.0803074487004	6.7838191205225	7.07608635943201	7.30926239630016	7.03156949436522	0.402791533493406	0.124019725769581	0.471278757298044
Merged-chr19-6235185-2	chr19	6234685	6235685	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198168, intron 1 of 13)	intron (NM_198168, intron 1 of 13)	655.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	5.91544010960233	5.75312779389488	5.39555306806052	5.50699325768907	5.57437881944753	5.5519693584729	-0.321562656046935	0.342121133047068	0.731184733736944
Merged-chr18-9731692-3	chr18	9731211	9732211	+	916.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24063.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.80887122125213	7.08659710414298	6.83147110161376	5.3810916975877	5.53789765305046	5.36352939724069	-2.51912270341059	5.02361907511496e-16	1.68550522581518e-13
Merged-chr2-18936850-2	chr2	18936350	18937350	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	61271.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.36836588445193	4.18622700416109	4.28800425430883	4.04056557474856	3.72632821843039	4.17851362508692	-0.86062345504078	0.0880401012313151	0.393677438925061
Merged-chr2-46373136-3	chr2	46372712	46373712	+	754.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	676607.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	2.55352403486234	2.95993354213256	2.76726437213024	2.69678177436185	2.58152175020318	2.90045636978583	-0.229581490894113	0.768452574047606	0.942871018290895
Merged-chr19-60999825-3	chr19	60999346	61000346	+	966.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	110097.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.67349946314426	4.75355998978152	4.62892950328243	4.46470413740657	4.38371034905949	5.00812660276757	-0.125919335085167	0.780712846776668	0.946078518476608
Merged-chr1-54898837-4	chr1	54898330	54899330	+	893.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	27557.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.95845510118879	4.10931698355971	4.26297098132788	3.75094774090862	3.81611634576923	3.9730379417526	-0.805080016712165	0.11492024377069	0.452587804955148
Merged-chr4-137609885-4	chr4	137609372	137610372	+	800.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	(TG)n|Simple_repeat|Simple_repeat	15700.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	6.2080318993587	6.19591205284273	6.63643817155739	6.32693266974565	6.39445438448221	6.37290164310415	0.0250867305327434	0.931356466815573	0.984877393921712
Merged-chr10-10458380-1	chr10	10457880	10458880	+	614.0	f1_balb.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	13934.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.09904294960769	6.30810708077297	6.34884881152724	6.70550389629796	6.84763340143705	6.90809236225151	0.913960522689095	0.000652806277511506	0.0129700823159449
Merged-chr4-53083613-2	chr4	53083113	53084113	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 15 of 49)	MIR3|SINE|MIR	71733.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	3.58379819989996	3.64953169684973	3.79443271684143	3.66961332642181	3.44798444944123	4.0011873586046	0.138285412577037	0.811233396228791	0.955145794362684
Merged-chr10-100137561-4	chr10	100137056	100138056	+	921.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL|DNA|hAT-Tip100	121735.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.68620382560299	3.9394427426953	4.01297323009103	4.00585095515556	4.04012427602011	3.88546998120992	0.308850279723178	0.549219059882327	0.860240560475278
Merged-chr8-77425004-3	chr8	77424511	77425511	+	805.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	B3A|SINE|B2	-92045.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.01404258706125	3.07281612305012	2.99850210925431	3.09247301181177	2.8809687075507	3.07117289532822	-0.0762638302792223	0.909525422224054	0.979508837767355
Merged-chr2-155613562-4	chr2	155613059	155614059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085378, exon 4 of 42)	exon (NM_001085378, exon 4 of 42)	2316.0	NM_001085378	668940.0	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding	3.28106397246598	3.12325921751203	3.02650477930906	2.94872442161602	2.85502458590658	3.09873657459784	-0.876475084269042	0.200546420684909	0.589640728529511
Merged-chr10-53346769-3	chr10	53346287	53347287	+	607.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141927)	TTS (NM_001141927)	9101.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	2.98577368519066	3.00315358625072	3.13102892500243	3.1223036061104	3.22546237565243	3.20272554665582	0.653593822386798	0.311835013036914	0.706723622367304
Merged-chr8-83715160-4	chr8	83714692	83715692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	15.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	6.86410449289617	6.9111096480854	6.78579405522324	6.83280373572618	6.89317505930619	7.04078498582732	0.0958339692542644	0.698151150514186	0.920221786401984
Merged-chr16-36642855-4	chr16	36642340	36643340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23237.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.15721984457548	6.83030951148768	6.74612490348966	6.89338906841	7.05561408603139	6.7565596273727	-0.0233956392734841	0.931056983605785	0.984765710287914
Merged-chr16-57188507-3	chr16	57188112	57189112	+	735.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 11 of 17)	L1_Mus3|LINE|L1	12859.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	4.00420338638471	3.71646677526886	3.82400271464092	4.07662930741846	4.03228503458729	3.99604914877079	0.549250528567073	0.281221778980799	0.679363447090677
Merged-chr9-85369722-4	chr9	85369252	85370252	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42602.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.63796355263101	5.69865181301953	5.75588485088752	5.81665105967978	5.55860219248839	5.51646392181113	-0.102855306320583	0.748821069910999	0.937087780077821
Merged-chr13-49371653-4	chr13	49371132	49372132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 2 of 6)	intron (NM_001039179, intron 2 of 6)	30083.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	4.97652388534685	4.71607480017659	5.0342820744779	4.82662133422091	4.62967090952984	4.89160828491855	-0.295857237157238	0.461691383478863	0.815107818354545
Merged-chr17-12999301-3	chr17	12998806	12999806	+	963.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6767.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	3.20247652145257	3.42241746055267	3.69706539466863	3.89460340580517	3.78009885100729	3.76733843839658	1.29438537452521	0.0298946269102597	0.208470676831117
Merged-chr14-26641445-3	chr14	26640977	26641977	+	905.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	3343.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	4.62698115102238	4.71374668348992	4.69611888593178	4.68029351779557	4.48813862092716	4.60217232923079	-0.217121591634438	0.596500472091231	0.879934958723667
Merged-chr9-111039168-4	chr9	111038684	111039684	+	902.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	18060.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.05571714227579	3.66175924066193	4.05453745658219	4.27614222165265	4.10921680546801	3.75980329803943	0.402938411694152	0.462529312421697	0.815273593730977
Merged-chr17-26502483-2	chr17	26501983	26502983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5989.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.18102265249044	8.20716484312497	7.64818805811418	7.86436074306767	8.06723576343432	7.68544759463928	-0.223068521778246	0.394811614556597	0.772579826044138
Merged-chr6-89415985-4	chr6	89415456	89416456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	L2b|LINE|L2	-53343.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.16913917381435	3.78073048820141	3.96975208600952	4.08609579322158	4.1176251810094	3.88534761951388	0.162728255026403	0.752476952729316	0.938262037443819
Merged-chr3-138442316-1	chr3	138441816	138442816	+	788.0	f0_c57.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-777.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	5.01401408810401	5.19562437185111	4.78743919739776	4.99484697179042	5.01354359446663	4.85453767277033	-0.128420057252887	0.741065466893185	0.934742147011145
Merged-chr12-81781291-4	chr12	81780770	81781770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-100.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	6.14621159881097	6.46356605428482	6.00299761880995	6.09577311153198	6.37974536660456	6.36229535917639	0.0940913452461095	0.757609629045301	0.939883186830738
Merged-chr2-25356364-4	chr2	25355864	25356864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-32.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	5.37920071719883	5.48895920523522	5.40328291841622	5.00781475330791	4.96630862098554	4.84894383837897	-0.984005548772236	0.00597267684657804	0.0695750378062531
Merged-chr12-102354140-2	chr12	102353640	102354640	+	968.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	70499.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.4506477168626	5.23458344428656	5.49231157103209	6.10156330712385	6.17250165094629	6.04199946277815	1.30767857642585	2.81885469366511e-05	0.000977296922293694
Merged-chr1-152913848-4	chr1	152913361	152914361	+	883.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11215.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.61317738980644	4.34128942784053	4.94071917577954	5.28797574474779	5.13560849626001	5.17269921977637	1.23955989805616	0.00277372669941134	0.0396379123456383
Merged-chr2-102638269-4	chr2	102637752	102638752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173749, intron 8 of 10)	intron (NM_173749, intron 8 of 10)	-20437.0	NM_001077514	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	3.76880665257683	3.62888368877023	3.40793311157491	3.77692517091781	3.97541666297042	3.60216652891612	0.610205317581318	0.295116130553455	0.691990077927385
Merged-chr16-56716235-2	chr16	56715735	56716735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357126, intron 1 of 8)	B1_Mus2|SINE|Alu	1215.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	6.1078285926216	6.25077189728734	6.22298882587036	6.26811105756926	6.49729628725865	6.08740020325166	0.190269518193125	0.514200444367167	0.842998279174159
Merged-chr15-90670278-2	chr15	90669770	90670770	+	694.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	B4A|SINE|B4	9118.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.99881920762096	4.70948922053915	4.76527607167362	4.50844440480092	4.3098773441102	4.46196246159664	-0.991243215044491	0.0195242317365247	0.15884099146844
Merged-chr18-68184203-2	chr18	68183703	68184703	+	691.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-43743.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.40406716660521	3.36391643545699	3.3238969362144	3.1233305448813	3.1969573338523	3.28214318161058	-0.680973353583174	0.269898530284558	0.666925517730306
Merged-chr6-83356768-4	chr6	83356250	83357250	+	867.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175277, intron 3 of 3)	intron (NM_175277, intron 3 of 3)	7266.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	2.67036072516848	2.35604588994842	2.90477305183014	2.33472369275958	2.2116592931722	2.50360410735829	-1.9500602401745	0.0330597283463891	1
Merged-chr18-69663274-4	chr18	69662799	69663799	+	890.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 15 of 19)	MIR3|SINE|MIR	-262260.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	6.26000314059805	6.36742004381861	6.42474482344308	6.40337765915212	6.68986291873755	6.24800860623105	0.203344334933321	0.478660184438932	0.823838216369461
Merged-chr19-5647360-2	chr19	5646860	5647860	+	579.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_009045, exon 11 of 11)	exon (NM_009045, exon 11 of 11)	9870.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.10456629752318	3.14539611462687	3.28192926518382	3.25306793959574	3.03081315974328	3.55403239850819	0.47153640725825	0.477571948399033	0.823237639056184
Merged-chr16-36708175-5	chr16	36707665	36708665	+	614.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	14187.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	4.07555537763522	3.54015535010512	3.93573851219503	3.87740388717668	3.98095416209373	3.90630150237625	0.16592308694215	0.76308132006965	0.941685351953643
Merged-chr5-124377376-4	chr5	124376890	124377890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 30 of 31)	intron (NM_001081203, intron 30 of 31)	-22762.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	4.75567817463784	4.82561191240307	4.94899255975106	5.02580878737233	4.83926053214359	4.83038511371602	0.138992433592509	0.719517703548674	0.927884839305547
Merged-chr15-103307358-4	chr15	103306855	103307855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030720)	TTS (NM_030720)	3083.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	4.59877157901554	4.50890213208525	4.84792860089491	4.89847102004641	4.94753219800007	4.76301473351882	0.529241904288882	0.191360284648484	0.577935703423869
Merged-chr11-116170539-2	chr11	116169998	116170998	+	847.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2320.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	3.37306737811847	3.2080228129174	3.37197745286349	3.11736849930406	3.30279920729225	3.27617381893444	-0.330590645947613	0.596201036916802	0.8798867145239
Merged-chr7-45389138-3	chr7	45388646	45389646	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126539, intron 4 of 9)	intron (NR_126539, intron 4 of 9)	6596.0	NM_009224	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	3.58749704570399	3.79497554566836	3.8770413956182	3.49926641437072	3.68341187705425	3.99065565764672	-0.0719267194846221	0.89918791754003	0.976510508522132
Merged-chr1-165751364-4	chr1	165750860	165751860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12398.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.14100067995393	4.06344381748376	4.22487608481229	4.48572116098093	4.22695819121457	4.24733431511097	0.506744138225024	0.276322762014354	0.673690550598639
Merged-chr14-105483540-3	chr14	105483043	105484043	+	727.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15245.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	3.09787556425571	3.29558292606024	3.27035965030498	3.46645055365366	3.52157374595649	3.5096209218357	1.08960428697407	0.0737350295743571	0.356872053328473
Merged-chr14-33248761-4	chr14	33248273	33249273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	31950.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	6.43960889302184	6.64310535895432	5.91912958137081	5.2732737373377	5.28415633472159	5.85761679897064	-1.56780633947001	2.19827721669858e-05	0.000790809557488351
Merged-chr16-87439033-2	chr16	87438533	87439533	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	B1F2|SINE|Alu	1559.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	3.48114285631265	3.50922051175061	3.674486769023	3.7250347811229	3.97575752862655	3.63801634095734	0.834559732104693	0.136324559736045	0.493336840191226
Merged-chr13-113470351-4	chr13	113469887	113470887	+	794.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	(TC)n|Simple_repeat|Simple_repeat	32457.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.59837764797052	3.40852399859321	3.24261512674675	3.51931709331241	3.47008592522261	3.65385050172978	0.417767294467958	0.487696647758439	0.82859137655302
Merged-chr10-81070013-4	chr10	81069513	81070513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022653)	promoter-TSS (NM_022653)	-70.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	5.81149674315771	5.72404676072589	5.39220494442118	5.30938383820306	5.34809955105862	5.71035326954694	-0.391171560462206	0.2663517839824	0.664166899200562
Merged-chr10-4046830-2	chr10	4046330	4047330	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	73755.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	3.7140903864151	4.22405345112018	3.95799796892622	3.57048230824075	3.24046450212528	3.62002897788726	-1.74841909239986	0.00412530488094366	0.0531359703612322
Merged-chr3-108381504-2	chr3	108381004	108382004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	2237.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	4.98771427460413	4.53007755451604	4.85869963112143	5.1498370856068	4.9549614285123	4.54996289112483	0.245717251628389	0.576075307529398	0.871496930818991
Merged-chr8-92822542-4	chr8	92822060	92823060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4737.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	3.56804125337703	3.51331791635573	3.84858585208526	4.30442468770746	4.32714198248129	3.86760469222287	1.72969010013969	0.00165638585613326	0.0267205417443071
Merged-chr7-143062048-2	chr7	143061548	143062548	+	626.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	ID_B1|SINE|B4	-7320.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	3.66046214335497	3.954019153831	4.32565635730941	3.87924206652354	3.96230253559986	4.57621550862946	0.473324060356081	0.416931865385612	0.787748896096239
Merged-chr2-118861556-2	chr2	118861056	118862056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-444.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	5.39591808396967	5.36449351178674	5.25791606013311	5.29211181684058	5.24556487482782	5.22325329646842	-0.181452257799819	0.59507830974977	0.879312736570733
Merged-chr2-166035820-4	chr2	166035269	166036269	+	774.708313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	43132.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.43299423365961	4.36165518165535	4.24772674612988	4.57069394915974	4.11349078587827	4.26954614512734	-0.0624402155685286	0.894695561202821	0.975576532925631
Merged-chr10-78156901-4	chr10	78156392	78157392	+	925.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	12876.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.1928141336152	4.1143783479161	4.28297750370028	4.43588147595432	4.39999270592303	4.47885568272061	0.647600549022318	0.147010753060091	0.511626196855749
Merged-chr1-43814407-7	chr1	43813917	43814917	+	872.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	13291.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	5.99832334322655	6.05630041895066	6.18885510588024	6.26118791753026	6.07932574662687	6.38306586028789	0.271264656787729	0.349606938209899	0.737671969432466
Merged-chr18-46612360-4	chr18	46611858	46612858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14654.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	7.33908679792825	7.61313929027893	7.1547599643689	6.79618001382832	7.003007910936	6.61151607040317	-0.852766699636898	0.0018173917174475	0.028700233445696
Merged-chr11-49713593-1	chr11	49713093	49714093	+	680.5	f0_balb.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-871.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	2.82137448948383	3.0954495730955	3.13938855858233	2.98151945855035	3.02450681874871	2.85198420212915	-0.301595899460363	0.668036786787034	0.908976375106763
Merged-chr8-33673375-4	chr8	33672844	33673844	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20106.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.92500526513956	6.23872804993224	6.3246716595369	7.82304637765339	8.17976647363389	7.3451257682178	2.5458288985047	1.25485762682992e-16	4.78964189969103e-14
Merged-chr2-124626626-4	chr2	124626115	124627115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	16319.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.97084129626623	6.79716632712173	6.56498419809261	6.51937493049811	6.62261372618266	6.20337343783358	-0.51128130117213	0.0758926694640552	0.362611383334201
Merged-chr12-103348722-4	chr12	103348224	103349224	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	7277.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	4.60354745153315	4.38933411628299	4.29964690226448	4.37932297023392	4.46734796060436	4.32177068543457	-0.121776899909516	0.784871939620914	0.947770123968912
Merged-chr4-155492472-4	chr4	155491987	155492987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	1126.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	7.46317846313615	7.50992789070142	7.16380312592557	7.3638689335999	7.14682387981555	7.24565290578869	-0.212452926035576	0.386525197629309	0.767131316757601
Merged-chr13-41460086-4	chr13	41459576	41460576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	27284.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.2502857024454	6.32927271992281	6.34783818128918	6.28892299966132	6.2958849684281	6.04905405258495	-0.137488446062033	0.623252371859162	0.891344246843871
Merged-chr4-141958357-2	chr4	141957857	141958857	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24635.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	4.15931487059234	4.31406156623436	3.73228527669009	4.40311471926502	4.40015549071338	4.33133723476214	0.744772012565344	0.15311522191172	0.521869962103404
Merged-chr3-110250181-4	chr3	110249712	110250712	+	980.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	787.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	6.40361698283937	7.22441040243052	6.92578439082884	6.383291979536	6.6720372639417	6.58902021601666	-0.537331603519316	0.0935252915531407	0.407276716530181
Merged-chr3-79181364-4	chr3	79180844	79181844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31575.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.95377311984144	6.73107266335706	6.41383449564055	7.42111287433009	7.54972499833383	6.93119957544204	0.919962603774417	0.00219724060131804	0.0331751036026986
Merged-chr19-3882013-2	chr19	3881513	3882513	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	23217.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.90761265945438	6.01855983217482	6.1745763548733	6.1108557019465	6.54518579404207	6.29513882681786	0.516052101391874	0.0868920155805215	0.390584562283185
Merged-chr3-103102631-4	chr3	103102138	103103138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24918.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	4.75457430327797	4.59385215960068	4.51523574849038	3.90985841701489	3.93359720475278	4.02964279454043	-1.87025030651811	8.2529643387239e-05	0.0024146014651777
Merged-chr19-12572815-3	chr19	12572326	12573326	+	773.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-684.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	5.58096232531327	5.43768972009978	5.60951157974994	6.19002688459382	6.24997962938719	6.48608300104279	1.3503986698945	9.68923194697252e-06	0.000389855711723254
Merged-chr2-138258567-3	chr2	138258065	138259065	+	838.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1981.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.84419771914955	4.82653583394077	4.93266528392136	5.08503666169968	5.134761859172	4.59081539318548	0.236893909289585	0.562907232055828	0.865755360453189
Merged-chr17-28950961-4	chr17	28950466	28951466	+	861.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1470.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	4.07125821983748	3.86321281178953	3.87849334014039	4.19312827650883	3.81705153243623	3.84384303342604	0.0596604836500699	0.90940955010692	0.979472789754797
Merged-chr12-99641534-4	chr12	99641027	99642027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13553.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	5.26375765849333	5.22784858659075	5.26293939698887	5.67630436822422	5.71833837823587	5.80411428426549	0.917591351549091	0.00477191983659598	0.0592910166811287
Merged-chr8-84966752-2	chr8	84966246	84967246	+	796.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-735.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	3.0776075348042	3.2299583183483	3.46080362047067	3.41146921145804	3.66298316613139	3.47785444840217	1.04038057559312	0.0967451036416397	0.41464408281404
Merged-chr6-114660138-3	chr6	114659644	114660644	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	17047.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	3.6531731286986	3.43177367398378	3.87797786034772	3.57433188461728	3.3089000989722	3.49651933620792	-0.713412925435258	0.233466834809891	0.629826270159681
Merged-chr12-112833707-2	chr12	112833215	112834215	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4194.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	3.77438172487056	3.93535362141306	3.7531773212108	3.69069348547557	3.76525701821627	3.71765273857736	-0.328927464340284	0.53462169183748	0.853068627162717
Merged-chr7-30169820-4	chr7	30169340	30170340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357557)	promoter-TSS (NM_001357557)	-82.0	NM_001033540	330503.0	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	6.26379667723629	6.53610270910782	6.75181779700797	6.86550148899662	6.88149487245412	6.79541653425996	0.516167446262771	0.0593989718127594	0.315611088543811
Merged-chr6-137735080-4	chr6	137734573	137735573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011499)	promoter-TSS (NM_011499)	-9.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	8.7366895280918	8.8447392549521	8.16661264165387	8.38276557932501	8.36593518433705	8.24942306955387	-0.399512741483455	0.114251026610234	0.451407710729328
Merged-chr6-35539864-4	chr6	35539373	35540373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008098)	promoter-TSS (NM_008098)	15.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	6.36441740211796	6.74402048200888	6.68793738454276	6.20678125263051	6.48128055307488	6.63686386074762	-0.254172020699617	0.384437566946776	0.765526696623039
Merged-chr6-51470959-4	chr6	51470382	51471382	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	266.0	NM_007624	12417.0	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	6.9911396045369	7.04393480827433	7.28705286394573	6.86813348930707	6.78920528828599	6.79421289646109	-0.442835585877036	0.0767061436822157	0.364884793248903
Merged-chr9-7836411-1	chr9	7835911	7836911	+	621.0	f0_balb.idr	intron (NM_007465, intron 1 of 7)	intron (NM_007465, intron 1 of 7)	395.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	8.5119552670374	9.26160453181079	8.33097180656574	8.68311367051384	9.16350392862769	8.35413225060369	0.00982488932927151	0.97611526974353	0.994572735300192
Merged-chr5-23978752-3	chr5	23978256	23979256	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	51556.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.2716004449713	4.12820498614702	3.82157226174246	3.63131771693841	3.4565858496382	3.89271711794076	-1.38738773145684	0.0142137477617666	0.128083720269613
Merged-chr11-23771200-5	chr11	23770651	23771651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009044)	promoter-TSS (NM_009044)	-181.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	9.01075378974457	8.94546660679672	8.56477798701567	8.8058824377321	8.84013084335679	8.55509820218092	-0.160313773055288	0.486209594114589	0.827728041593793
Merged-chr8-4323992-2	chr8	4323492	4324492	+	895.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	MER20|DNA|hAT-Charlie	1108.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	4.77712309009399	5.0342691246083	4.95894382191064	4.90749932143667	5.12736531018846	4.87615061952773	0.123961239159907	0.749094433464539	0.937162075172416
Merged-chr1-87634346-4	chr1	87633814	87634814	+	884.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14002.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.68710139392532	5.80629246766356	5.8956376223619	5.73771216728092	5.86601189201491	5.83664564824687	0.0401192629801287	0.895515939171128	0.975665889379756
Merged-chr11-96066335-2	chr11	96065835	96066835	+	795.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	-971.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	3.44689942394609	3.46113917077068	3.5606538936705	3.49619008040117	3.38459366263689	3.35632154554796	-0.274113429240107	0.637717991835083	0.89735407749672
Merged-chr2-129798053-2	chr2	129797555	129798555	+	616.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029452)	TTS (NR_029452)	-2462.0	NM_183262	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	2.14103819800804	2.34546631090874	2.46830602182894	2.40664105198357	2.38839634752345	2.60358723348162	0.920100959766802	0.288004945987687	1
Merged-chr5-5359467-3	chr5	5358971	5359971	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	B3A|SINE|B2	20780.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.01331524920567	6.19196469291189	5.4778181280722	5.83599081419058	6.05980087553631	5.47696228735177	-0.202960653821536	0.586679381793158	0.875615538765309
Merged-chr17-17884991-4	chr17	17884504	17885504	+	997.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1065.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	3.93136123519163	4.3483750210861	4.68482173281844	4.39586906269279	4.67018305271109	4.60002731157495	0.532810497512445	0.28621745750303	0.683472010443741
Merged-chr11-106159461-4	chr11	106158921	106159921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001356459, exon 2 of 5)	5' UTR (NM_001356459, exon 2 of 5)	506.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	7.45791606417302	7.3144870117259	7.24932104657134	7.34065115929346	7.51988932052546	7.43978224694816	0.133305634367449	0.565813665476133	0.86688237163883
Merged-chr1-186584051-4	chr1	186583541	186584541	+	935.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25360.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	3.50313791116072	3.38913076081372	3.56409279534977	3.57112306735947	3.3413804700153	3.35863056354871	-0.210465180352167	0.721402238735617	0.928468816889347
Merged-chr4-155761141-4	chr4	155760626	155761626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_179203)	promoter-TSS (NM_179203)	-28.0	NM_179203	108888.0	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	6.39086681312272	6.63363605817031	6.15429232929659	6.34256705428139	6.36991261284432	5.75218411726183	-0.357909254796395	0.282470966510286	0.680451612659422
Merged-chr7-100494721-4	chr7	100494240	100495240	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	1382.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	8.65338509638667	8.87414798620395	7.70783682471708	8.12669574503042	8.60256864190365	7.86763098011086	-0.373674665700833	0.499215661268549	0.834362493579059
Merged-chr8-94601842-4	chr8	94601349	94602349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	-92.0	NM_001359093	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	7.48766595890815	7.94894325467326	7.59492142119384	7.88667811200825	7.99374480017445	7.9429825901496	0.350214658892479	0.147752744632596	0.512964091266703
Merged-chr15-96660924-6	chr15	96660382	96661382	+	949.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-17969.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.05161429845649	4.06073898101824	3.97946940858452	3.97653543443529	3.94321125331559	4.51715905828786	0.365161556939325	0.482199602934456	0.825427202167635
Merged-chr6-99187698-3	chr6	99187215	99188215	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	78800.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.37931206912691	3.59335113266602	3.63118169031583	3.58777304808644	3.35673760389164	3.31419036430572	-0.406574531508878	0.496903292322512	0.833355041868306
Merged-chr12-3344919-4	chr12	3344418	3345418	+	994.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20214.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	7.59782382364919	7.34416216314271	7.56246045466377	7.87622998540451	7.8648028155823	7.66646686059227	0.443447095020103	0.0537844882853457	0.29740162820621
Merged-chr2-75802108-4	chr2	75801610	75802610	+	966.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30067.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.78274817579565	4.55370708343389	4.71608264397882	4.43037739449358	4.12474945433875	4.6683957841605	-0.677286709524334	0.137389887982787	0.495339390756608
Merged-chr6-98575461-4	chr6	98574971	98575971	+	940.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-232717.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	4.08015853454992	4.14425458646047	4.12374415049282	4.4503260730283	4.35855930070655	4.6191832721426	0.954723557354719	0.0367685830703905	0.236122579310107
Merged-chr5-101829410-2	chr5	101828910	101829910	+	984.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64280.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.8679926886928	2.71848063740095	3.23680403488646	3.05171955626741	2.70784894446682	3.2013515072024	0.203691970197069	0.789253237493622	0.949154090987258
Merged-chr6-99655799-6	chr6	99655320	99656320	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	10951.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	6.20070192638506	5.89543087894093	5.8490338621778	6.18614408321171	6.20524324903362	6.07983177486187	0.27873359356177	0.352549285238327	0.740194084833795
Merged-chr15-64108712-2	chr15	64108212	64109212	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 24 of 28)	intron (NM_001276461, intron 24 of 28)	-48264.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.42600014315562	2.35579305557345	2.59490751587585	2.3172782276295	2.37027378676762	2.3537077614791	-0.70375232937082	0.394817776781289	1
Merged-chr17-25796665-2	chr17	25796165	25797165	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133719, intron 1 of 3)	CpG	380.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	2.5294224268643	2.4968868211215	2.70092093721373	2.76733880537451	2.65820766824702	2.83448970770443	0.997584878528568	0.189735991420481	0.575767774402458
Merged-chr3-54013312-3	chr3	54012804	54013804	+	573.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-142753.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.09465236800431	3.1362967171852	3.21588594020928	3.46673392032443	2.99073996406146	3.3992509039635	0.618634574854462	0.352249079916749	0.739888459678721
Merged-chr5-76589004-1	chr5	76588504	76589504	+	1000.0	f0_c57.idr	Intergenic	CpG	-2710.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	6.13517466469558	5.83291642455701	5.82096971228224	6.22336312902093	5.78928480176207	6.26091983195025	0.269137684560718	0.409898928470469	0.783037226945994
Merged-chr15-76477357-4	chr15	76476862	76477862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331154)	promoter-TSS (NM_001331154)	0.0	NM_001331153	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	5.99300908536619	6.34236524291694	6.01987842432284	5.95058089337173	5.93533022598356	6.18868270632101	-0.194540323192444	0.524847108624403	0.848833934932934
Merged-chr3-144570820-2	chr3	144570320	144571320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011828)	promoter-TSS (NM_011828)	393.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	7.69720634036047	7.73638662277552	7.37247544813588	7.65947440079519	7.89681843583597	7.50595517468364	0.124117029104961	0.6189078717264	0.889524760662882
Merged-chr4-151862594-4	chr4	151862095	151863095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-827.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	7.86148432979324	8.21975512106185	8.09630418118855	7.99717887978808	7.9356669303492	8.04773603558815	-0.107899633413914	0.630686324882797	0.894813847611093
Merged-chr7-126474572-2	chr7	126474072	126475072	+	908.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289540, intron 1 of 10)	intron (NM_001289540, intron 1 of 10)	558.0	NM_001289538	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	5.24383891598562	5.02342927442178	5.14108413266021	5.27437400240394	5.01303653627461	5.17199984085655	0.0282430382979861	0.938380185049552	0.986378534817306
Merged-chr19-32277493-2	chr19	32276993	32277993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-66480.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.44799316360781	5.3607599544553	4.86611150341913	4.95965385248319	5.00020952188184	4.62839421063785	-0.790670580067651	0.0574561416147379	0.309357488771782
Merged-chr3-146150028-8	chr3	146149525	146150525	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005846)	promoter-TSS (NM_001005846)	-149.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	6.82277501927791	6.59604852754815	6.2957754171089	6.69267812413941	6.60185778255135	6.3141480804294	-0.0742940306097537	0.801866884246939	0.953086016975963
Merged-chr5-65959163-2	chr5	65958663	65959663	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7961.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	2.87654596593078	2.53817150648209	2.81841518066296	2.79279696953389	2.9091570365618	2.89150455534121	0.579181192465883	0.440505373870687	0.801871784087343
Merged-chr11-83660818-2	chr11	83660318	83661318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1766.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	5.14141681114578	4.47607961236311	5.04054609200661	4.69630517064299	4.67241594684151	5.42302068201487	0.119731708982736	0.804481520412055	0.953651704501661
Merged-chr13-37777585-4	chr13	37777087	37778087	+	816.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48451.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.39691136812592	6.35922643104129	6.52555094142697	6.56816318867893	6.42259215228584	6.32622052095279	0.0369523010251841	0.891317852306779	0.974795270136864
Merged-chr14-31365592-2	chr14	31365092	31366092	+	927.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009796, intron 15 of 20)	intron (NM_009796, intron 15 of 20)	28954.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	2.32278372972926	2.15425476922299	2.39355790765473	2.27598315001198	2.15066392483766	2.13808596196641	-0.706881281013672	0.423936029104099	1
Merged-chr17-28734622-2	chr17	28734122	28735122	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	intron (NM_001168508, intron 8 of 11)	-34695.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	3.47621650538275	3.38410571233783	4.11316976111211	3.36396390459073	3.31356464341991	4.13977096685404	-0.109279030541216	0.876344971330117	0.97129382175502
Merged-chr11-54965398-4	chr11	54964907	54965907	+	973.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-2467.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	4.37292253336961	4.45008632153338	4.8598134489583	4.49391886603228	4.24698015022393	4.89040685261106	-0.0228698061521449	0.962150426556171	0.990763104917838
Merged-chr5-147435537-1	chr5	147435037	147436037	+	639.5	f0_balb.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	5381.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.30863997854059	4.66026318307623	4.6442256585779	4.2683120353259	4.39288929426727	4.33795807120256	-0.530719500293312	0.238596389353654	0.63534076950009
Merged-chr9-124312650-4	chr9	124312144	124313144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243117)	promoter-TSS (NM_001243117)	50.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	7.67508844405364	8.04398543322029	7.73054307812038	7.90075551232483	8.02659638425888	7.76031188204746	0.105882500035075	0.656747965783991	0.904693205515276
Merged-chr6-31412698-4	chr6	31412190	31413190	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	B3|SINE|B2	13862.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	5.13414943743831	4.65060877712847	4.56538900067624	4.8722316719104	4.46780313862224	4.83625928934462	-0.194516446818735	0.666214258804461	0.908049448139768
Merged-chr11-58329443-1	chr11	58328943	58329943	+	630.0	f1_balb.idr	intron (NM_001256520, intron 1 of 2)	RLTR19|LTR|ERVK	896.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	5.64151462205897	5.9123964192932	5.4807887751351	5.82543682920208	6.12023431654433	5.7213027461646	0.374920965851898	0.266536311755828	0.664166899200562
Merged-chr7-55957377-4	chr7	55956894	55957894	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	5099.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.00779713852154	7.07322205362929	6.95098838933605	7.45571767506835	7.84939763164698	7.17297515854151	0.774120842839501	0.00475466370825744	0.0591858825049785
Merged-chr7-114294726-2	chr7	114294223	114295223	+	565.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-18607.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	3.16830904758564	2.83802633893708	3.14638900603643	2.78708391382057	2.46220842534234	2.74040580042068	-2.12952797211221	0.0101831190398163	0.101669902695588
Merged-chr2-173352963-2	chr2	173352463	173353463	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76430.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	5.3574130587847	5.20637214359734	5.37934393270621	5.22888784150275	5.19066564329202	5.41270455313838	-0.0803616335685586	0.817245978861172	0.956754861188725
Merged-chr15-64301491-1	chr15	64300991	64301991	+	610.0	f0_balb.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	11182.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.24776903871558	4.24908664481272	4.29291594028976	4.1703141374797	4.504960814695	4.52833611735391	0.393410590970993	0.389483087793197	0.769185882066227
Merged-chr12-3906634-3	chr12	3906152	3907152	+	916.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14908.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.93569058909805	5.10748974027785	5.01039425732276	4.89084232327939	4.58592032887817	4.9706421393677	-0.45789916502188	0.247445249150134	0.644365921549913
Merged-chr7-143822958-4	chr7	143822442	143823442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007856)	promoter-TSS (NM_007856)	-90.0	NM_030221	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	7.00523628765109	7.26242589761207	7.06096203960587	7.085624385642	7.49999929217341	7.11886484625875	0.21157698747324	0.421141594359712	0.790131900416752
Merged-chr9-108350565-2	chr9	108350065	108351065	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	intron (NM_011678, intron 1 of 21)	2734.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	2.49062918086742	2.32270216661013	2.52912479989032	2.19623938663469	2.12271017417564	2.28413665940203	-1.80605303599856	0.0456020961954987	1
Merged-chr4-132798122-4	chr4	132797636	132798636	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.36991885260005	6.15629099078299	6.5552582947238	6.5132568486142	6.58980727361841	6.3628113530578	0.224105642969249	0.428556057161101	0.795398206733157
Merged-chr17-53594835-4	chr17	53594364	53595364	+	893.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	10738.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	4.03198819508834	4.26295228553304	4.7404683188519	4.2848289443833	4.1388806543963	4.70138690018566	0.0480959756447978	0.926672058602263	0.983551822187064
Merged-chr7-81304301-4	chr7	81303800	81304800	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40934.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	5.19014566412887	5.08192864175506	4.96642949407479	5.35163508514701	5.19645815487398	5.105363322294	0.279544683384505	0.440970568171116	0.802167900847268
Merged-chr9-20980002-4	chr9	20979499	20980499	+	943.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3206.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	5.28625757473692	5.09603140636851	5.14394943871573	4.96652186785037	5.16523606526095	5.24029774358301	-0.109387914000482	0.763503389412372	0.941793063578371
Merged-chr1-156014113-4	chr1	156013638	156014638	+	793.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	20679.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.1587778983042	5.97462566591372	5.7134644012239	6.50143381839212	6.8571177538624	6.02253344540964	0.908854373112382	0.00903721281196507	0.0938269683812471
Merged-chr13-101917437-2	chr13	101916937	101917937	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149220.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.73536193218353	3.64087445730278	4.116105703729	3.8277041760756	3.53635815535532	3.42969567136526	-0.755107682450316	0.203719460726597	0.593879020710461
Merged-chr1-55665323-4	chr1	55664804	55665804	+	690.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	259358.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.52754982178157	3.68446622538113	3.56252773456325	4.03583150797293	3.53003518747342	4.12620108998094	1.04164317540014	0.073824559198149	0.357180714138829
Merged-chr10-81268198-4	chr10	81267676	81268676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	4.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	6.72144505606571	6.88645741164896	6.74525967019989	6.67424497852322	6.95642018551831	6.47535204927869	-0.0892612736963461	0.746240808411184	0.936300236930265
Merged-chr4-117887367-4	chr4	117886843	117887843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033617)	promoter-TSS (NM_033617)	-14.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	7.63035308557503	8.05340610683946	7.76114401556796	8.12229885865505	8.24636725134518	7.90162653590007	0.386530584905878	0.113302583230276	0.449643790023599
Merged-chr13-54468855-4	chr13	54468368	54469368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028597)	promoter-TSS (NM_028597)	-28.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	5.922034197447	6.0091812706342	6.02274568557146	6.4286293796385	6.50440378502567	5.88593310516746	0.560210445018375	0.0760349958890077	0.362957944921838
Merged-chr7-33901167-3	chr7	33900709	33901709	+	740.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43776.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	3.6558529867046	3.64344673746739	3.83862039193128	3.71360217215871	3.80774522913075	3.85861715548124	0.278052719390705	0.600626400941719	0.881747178918412
Merged-chr16-94601252-2	chr16	94600752	94601752	+	632.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-10167.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.50675065220647	6.73834640118392	6.79516996441177	6.50635152682588	6.47931785912748	6.62218180187383	-0.23728908592245	0.371599049370808	0.755694928635403
Merged-chr16-15887255-4	chr16	15886768	15887768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007679)	promoter-TSS (NM_007679)	-18.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	7.48817899323274	7.77773175186905	7.70064827227086	7.37800364554055	7.60713774679163	7.8317357742964	-0.0667087986025553	0.787905628327636	0.94877064431094
Merged-chr6-83450856-4	chr6	83450348	83451348	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	5544.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	4.69194083025908	4.91041674033085	5.17410586205448	4.89911655686729	4.9554717664782	5.23695295726846	0.218928918248058	0.585958168572303	0.875213744714659
Merged-chr8-70042788-4	chr8	70042287	70043287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167939)	promoter-TSS (NM_001167939)	-26.0	NM_027481	70616.0	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	7.00097588590429	7.49087534196885	7.19535223824479	7.57937960765143	7.51314962148987	7.24074818464333	0.30785124655054	0.245152707340907	0.642381314494918
Merged-chr9-98986340-4	chr9	98985858	98986858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122851)	promoter-TSS (NM_001122851)	-15.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	5.73067006251252	6.00784533619915	5.72016884182453	5.79246364562552	5.82625644831454	5.39355480453833	-0.241586134285522	0.472439137918447	0.820550293768681
Merged-chr6-39244181-3	chr6	39243660	39244660	+	678.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37387.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	3.46349113301902	3.44582643449229	3.54309597994801	3.31439748258779	3.25446599012268	3.16002667366886	-0.928785071157365	0.128569817003803	0.479668086501925
Merged-chr8-104395693-5	chr8	104395113	104396113	+	931.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153582, exon 1 of 4)	exon (NM_153582, exon 1 of 4)	194.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.1648562661599	4.91936661423351	5.11890980171572	4.96630765560003	4.36277443452876	4.75445403045123	-0.79690312023274	0.0632087480683092	0.327368520828509
Merged-chr12-84755026-2	chr12	84754526	84755526	+	554.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	18086.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	3.56837029356914	3.45291029861687	3.44519404572966	3.5943242535476	3.62099058701678	3.82899558458132	0.661864863235397	0.241845064151458	0.638862793574907
Merged-chr9-106887234-4	chr9	106886746	106887746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175402)	promoter-TSS (NM_175402)	-246.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	6.47591069207013	5.79006607589088	6.03570190742141	6.30206124970026	5.57761611406593	6.16187678636541	-0.153244147811755	0.683128758147841	0.91523316791368
Merged-chr8-22806637-4	chr8	22806139	22807139	+	951.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-985.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	6.70372392045656	6.73919043682696	6.77624534659818	7.35724571234512	7.76424568419159	7.35796037771569	1.17213004108714	4.86376109354846e-06	0.000216650874235536
Merged-chr16-17234149-4	chr16	17233650	17234650	+	925.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	563.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	7.29187635022346	7.37469990622224	6.81651511929988	6.78171119091696	6.6108979367735	6.22954828544285	-0.957269094501112	0.00158032877107686	0.0257381085112083
Merged-chr16-17276302-4	chr16	17275808	17276808	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177473)	promoter-TSS (NM_177473)	8.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	4.4768489272878	4.46612667314069	3.85668380907162	3.96185345292459	3.86957361166551	3.75608375410058	-1.26696570013836	0.0199532576985773	0.161144391593053
Merged-chr17-47766805-4	chr17	47766305	47767305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18939.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.57532560571715	7.80136820779749	7.66820554447345	7.8465297965838	7.81399712162905	7.44574710853238	0.0519225182244716	0.829350379499584	0.960024094417547
Merged-chr4-15945385-4	chr4	15944858	15945858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026172, exon 1 of 10)	5' UTR (NM_026172, exon 1 of 10)	149.0	NM_026172	67460.0	Mm.393293	NM_026172	ENSMUSG00000028223	Decr1	1200012F07Rik|Decr|Nadph	2,4-dienoyl CoA reductase 1, mitochondrial	protein-coding	4.70964699215772	4.98178862228194	4.9864664148043	4.90891792164059	4.61694058745445	4.71820597798084	-0.327846484471233	0.418347800685492	0.788588731807313
Merged-chr3-69223129-4	chr3	69222606	69223606	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027843, exon 1 of 1)	3' UTR (NM_027843, exon 1 of 1)	687.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.50349185108835	5.46625314268845	5.57803283347043	5.92363511133208	6.25058006361874	5.69795867259052	0.867671346864289	0.00891995788474111	0.0929740518193083
Merged-chr18-57085771-4	chr18	57085221	57086221	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47369.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	2.72535774811985	2.68042949264896	2.78331473553729	2.74510681750734	2.54476044119594	2.67060964270911	-0.412182934372171	0.580942291164521	1
Merged-chr8-71382088-4	chr8	71381580	71382580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-128.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	7.65399279703516	7.60806117634898	7.41008388191369	7.43229027586875	7.29720242132548	7.40259522479454	-0.28075091645804	0.222009671862868	0.616897003719002
Merged-chr1-171646623-4	chr1	171646115	171647115	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347184, intron 1 of 5)	intron (NM_001347184, intron 1 of 5)	2384.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	3.93607365157684	3.83942086382213	3.99556884477112	4.67034018676147	5.03633730005814	4.66692884478155	2.41036680144512	4.7341287689978e-07	2.80168838272239e-05
Merged-chr15-78878360-3	chr15	78877853	78878853	+	946.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	1163.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	7.41133098011038	7.31004581967365	7.5209029118612	7.91092571766711	8.17259077642227	7.91084881744278	0.861584308556143	0.000168500151593448	0.00435954249118529
Merged-chr8-46818332-4	chr8	46817821	46818821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	78576.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.19303573602705	6.09377161293226	5.93024650269324	5.76674447018929	5.94142859349765	6.24974809343036	-0.156957755926168	0.615487775714902	0.887997968576034
Merged-chr14-75130429-4	chr14	75129997	75130997	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001247984)	promoter-TSS (NM_001247984)	386.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	6.76312676907347	6.77238752262606	6.74540062656458	7.01148129405522	7.23595883200456	6.65448947478788	0.373014719590292	0.174304932143706	0.553423314145592
Merged-chr7-114360774-2	chr7	114360255	114361255	+	734.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_029438, intron 2 of 4)	ORR1D2|LTR|ERVL-MaLR	54406.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	2.42383891904824	2.70881498844003	2.90078375342911	2.65275291856491	2.5955662920594	2.85815904756381	0.0778490398333622	0.92256830970688	0.982621045978137
Merged-chr11-95824335-4	chr11	95823836	95824836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153104)	promoter-TSS (NM_153104)	-164.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	6.28259921129195	6.12707062748859	6.24513474158395	6.10220012923307	6.11753686665374	6.04905745274061	-0.212522557090037	0.449655962511369	0.807941724689498
Merged-chr15-101160150-4	chr15	101159608	101160608	+	824.1875	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13964.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	4.07166237331224	3.79700944247747	4.41447115615387	4.72839626605269	4.56509406224345	4.71659373003547	1.48042766347865	0.00251014303444763	0.0368626864825836
Merged-chr10-96372917-2	chr10	96372417	96373417	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146710.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.65218843169096	3.75235539324449	3.94427683877605	3.52204176768014	3.60061286656042	3.7752564081542	-0.506650444785957	0.359099541072042	0.745343050659493
Merged-chr11-84818837-4	chr11	84818331	84819331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 1 of 4)	CpG	684.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	8.03523902416884	8.32844484765072	8.1939278615466	8.08289996603395	8.36720843571839	8.17747667844493	0.0367320020533979	0.870080543722405	0.969998326624549
Merged-chr3-19201509-4	chr3	19201010	19202010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356295, intron 2 of 7)	RSINE1|SINE|B4	13215.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	5.83650112842785	6.21380514963626	5.98379267939868	6.51815029756042	6.40190812709409	6.24579755322997	0.623111127636609	0.0363437497221322	0.234602958693481
Merged-chr3-98014069-2	chr3	98013569	98014569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	531.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	7.956271662038	7.93447490373451	7.75628150548663	7.86270896185312	7.75439815295674	7.87106438133562	-0.0889415269868829	0.682060993598401	0.914930546030715
Merged-chr14-26442806-4	chr14	26442236	26443236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347494, intron 10 of 19)	intron (NM_001347494, intron 10 of 19)	85189.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	6.09741176299929	6.65668805271216	6.23634085348538	6.28062672129295	6.68671161060641	6.23323234880902	0.109821346313162	0.735032301399531	0.932617455907478
Merged-chr14-47504736-3	chr14	47504272	47505272	+	736.6555179999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146085, intron 2 of 3)	intron (NM_001146085, intron 2 of 3)	32211.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	3.60645684111918	3.18941256072096	3.71824560303768	4.1063668682768	3.94622824811995	3.78981908004357	1.46107757043343	0.016524355539816	0.142246904175151
Merged-chr19-56391894-2	chr19	56391394	56392394	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1856.0	NM_001286552	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	2.83283425860234	3.07716676866941	2.74446362083456	2.84457817096057	2.7099357583571	3.00328581654139	-0.216757555378366	0.769001984732393	0.942983923980385
Merged-chr17-87975646-3	chr17	87975172	87976172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010830, intron 1 of 9)	CpG	622.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	5.39821589150382	5.41809323644041	5.60607094886638	5.79853968192042	5.84735484870543	5.66848826962249	0.578411943400342	0.0698993095475254	0.34616008503931
Merged-chr4-143212660-4	chr4	143212141	143213141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	68.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	8.3443733928853	8.47239970108257	8.30640753223405	8.39945452352796	8.21159699218464	8.34397675094869	-0.0839507262206524	0.686534025668591	0.916761528494478
Merged-chr3-30592528-4	chr3	30592065	30593065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7305.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	4.033240521043	4.00268632150464	3.8801457533481	4.23769922118399	4.17647048675629	4.24312121906429	0.683372554839774	0.154605626340396	0.523896269417052
Merged-chr19-10023385-4	chr19	10022851	10023851	+	925.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5157.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	6.25612381959279	6.74773774778704	6.73309576483766	6.56051787172636	6.87690583061989	6.63282691707775	0.170139157795867	0.563581607586845	0.865992481769395
Merged-chr13-89739642-4	chr13	89739128	89740128	+	994.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	CpG	2884.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.33273783942252	4.16083504035925	4.0892121583793	4.71449825324764	4.32561042358446	4.79512633941507	1.0620183586527	0.0249508758176476	0.186874424221059
Merged-chr4-122898521-4	chr4	122898012	122899012	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12436.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	4.25844379036355	4.39161102601786	4.21843129469758	4.68442043155226	4.91774039957828	4.60717916005306	1.1246923203905	0.0101544084425985	0.101486228659616
Merged-chr3-109051922-4	chr3	109051432	109052432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24325.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.9885780739627	4.97189094179848	4.88383309564147	4.52277020207993	4.25095257390504	4.6017820013424	-1.18553325496715	0.00452475423629294	0.0570534551437283
Merged-chr1-71100332-4	chr1	71099748	71100748	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007525, intron 1 of 10)	intron (NM_007525, intron 1 of 10)	2724.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	4.26860075537937	4.52016221425283	4.58293871460765	4.53920543401921	4.53305392463455	5.03231850441513	0.607915910327954	0.180539230435547	0.562485800954093
Merged-chr9-95559462-4	chr9	95558961	95559961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198414)	promoter-TSS (NM_198414)	-356.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.71064425137942	6.32029900447818	6.58862595913732	6.8608871782233	6.10533694053057	6.20946924051263	-0.173363895292951	0.607373202471414	0.884581207370863
Merged-chr2-29664276-4	chr2	29663765	29664765	+	866.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	44545.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	4.06410864141962	3.8741650642363	4.21938753355912	4.01184227943721	4.18455494259438	3.85369072459235	-0.0572869366477441	0.911021031982871	0.980017061055921
Merged-chr6-86666004-4	chr6	86665489	86666489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	3170.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	6.9225103434167	7.02381437555648	6.98009953524563	7.05222785684976	7.46335124307265	7.14311748817364	0.398976240119579	0.118508992298675	0.459921210483695
Merged-chr11-50206460-4	chr11	50206009	50207009	+	675.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 4 of 7)	intron (NM_001290769, intron 4 of 7)	4311.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	3.82779672861503	3.68685760569951	3.75761671478578	3.29393700833706	3.62089683986236	3.67448790874465	-0.752467728682093	0.195355047384413	0.583020169139918
Merged-chr12-40522658-4	chr12	40522171	40523171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	76618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.01667790039255	6.02511589069288	5.77399645428087	6.11311488929752	6.38743349036688	6.17227448169326	0.483338480234115	0.105506362411193	0.433550960714632
Merged-chr9-37489867-4	chr9	37489375	37490375	+	882.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146222, intron 1 of 3)	CpG	554.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	5.49760253643647	5.07308872828149	5.67369569431176	5.64250694013904	4.71631867373996	5.50185604708613	-0.170432880610122	0.703922017046907	0.922296896558746
Merged-chr3-108655984-2	chr3	108655484	108656484	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177771, intron 2 of 12)	B2_Mm2|SINE|B2	2044.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	2.23201221282709	2.12518431983675	2.06527624581632	2.29132440074244	2.15804204103464	2.65886941586252	1.60449983068137	0.0896082518949238	1
Merged-chr6-39264865-3	chr6	39264371	39265371	+	681.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58098.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	3.3902958063087	3.38068946351791	3.73843181035828	3.18569423818318	3.18093915338136	3.3523453492686	-1.05932536642183	0.0910418818060348	0.401574986117974
Merged-chr10-94922984-2	chr10	94922484	94923484	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21594.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.6110035280846	4.22896089267867	4.31418386692063	4.10750481420956	4.14371770480915	3.99451777320056	-0.846386120382152	0.0796319236083192	0.373195188533358
Merged-chr11-117320143-4	chr11	117319650	117320650	+	951.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11565.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.15606696073975	5.85788888177788	5.97820466034747	5.95948317820766	5.69682349407327	5.65838459345597	-0.398832253995576	0.205873406018223	0.596480182734923
Merged-chr14-8080304-4	chr14	8079815	8080815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348727)	promoter-TSS (NM_001348727)	2.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	8.12566411863595	8.47050126500528	8.209095900498	8.16827837507192	8.39090532291889	8.12313186115292	-0.059365538420283	0.795254800782394	0.951079860758379
Merged-chr10-44456434-2	chr10	44455934	44456934	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	2314.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.28855443019993	5.65358815497929	5.60474993719263	5.22101269622557	5.3611689365946	5.35308584502065	-0.407019846735083	0.242801680798532	0.639964593616656
Merged-chr7-126758878-2	chr7	126758378	126759378	+	623.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-748.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	4.03986144370965	3.96259949006545	4.33594226921781	3.86742746317966	3.830848726199	4.15483194365955	-0.493519610506826	0.33839812479983	0.728352844724381
Merged-chr11-70700799-4	chr11	70700318	70701318	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	270.0	NM_153103	16562.0	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	7.2209416412344	7.19659656080514	6.68949874169711	7.09516828418872	7.06573482990712	6.83100768203886	-0.0937844032425945	0.734749217519887	0.932617455907478
Merged-chr16-94239810-4	chr16	94239317	94240317	+	845.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	50474.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	6.56475144300937	6.11396874039787	6.34249647964196	6.37254078867234	6.71335764693416	6.1727158952958	0.159244820182214	0.612357225635973	0.886694626735313
Merged-chr8-22962856-2	chr8	22962356	22963356	+	791.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-11980.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.6140385101384	4.72779480780663	4.49673837473348	5.10960453797022	5.32717517999225	4.94292191833947	1.15495762667439	0.00411813934884162	0.0530847620353856
Merged-chr7-25747157-2	chr7	25746657	25747657	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178089, intron 3 of 7)	PB1D9|SINE|Alu	7602.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	3.58673001300454	3.38536953247023	3.71418182492724	3.71412187599175	3.77613543165132	3.73297143899828	0.623169180634529	0.264008323504108	0.661879105198449
Merged-chr6-125509971-3	chr6	125509455	125510455	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-15195.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.54718253828564	2.57686462961012	2.54850485879464	2.78377599238415	2.55816374664645	2.80836136359516	0.89928425545641	0.241895419436344	1
Merged-chr1-180830669-2	chr1	180830169	180831169	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17064.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.63893905663482	4.16687857925979	4.51391826963707	4.59732162870612	4.17146631803039	4.36711139689966	-0.168893860005948	0.724706880833174	0.929459725191008
Merged-chr15-9124631-2	chr15	9124131	9125131	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 4 of 9)	intron (NM_013787, intron 4 of 9)	15823.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	4.59543018116695	4.57314005241137	4.96025313857005	4.37191836621599	4.27973784524941	4.89356780362931	-0.437335642346103	0.351634140462506	0.739403630741215
Merged-chr15-31410739-2	chr15	31410239	31411239	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	42950.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	4.20942434207889	4.35617570129535	4.36508433477816	3.89123730861118	3.96873441533293	3.97445781540538	-1.04870695132022	0.0296137385078028	0.207119437989178
Merged-chr2-32727577-4	chr2	32727099	32728099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252547)	promoter-TSS (NM_001252547)	-90.0	NM_001252547	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	3.28167033141339	3.3081907425348	3.31395508119371	3.29717991105254	3.34993826078262	3.49362779873574	0.30688373139121	0.609031326204754	0.885053989692691
Merged-chr9-45095719-3	chr9	45095220	45096220	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16537.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	6.80758242552286	6.89425854565416	6.87445308695072	4.61995774895623	4.60113675499693	5.07393956879802	-4.09983207456014	1.06092714398409e-28	4.6461908314015e-25
Merged-chr5-30871955-4	chr5	30871434	30872434	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144525, intron 4 of 16)	intron (NM_144525, intron 4 of 16)	2355.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	4.07929357103933	4.10586321850996	4.49677149541786	3.69367871573828	3.90492360286622	4.28958331309035	-0.730372959178521	0.17788043415321	0.55892688546374
Merged-chr16-91376325-1	chr16	91375825	91376825	+	628.0	f0_balb.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	3542.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.82409218711351	6.83140739585797	7.03958795571843	6.72430101359916	6.82430294973453	6.38337430961115	-0.352823043171204	0.197668745429248	0.585805105555675
Merged-chr2-181519871-2	chr2	181519350	181520350	+	691.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-635.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	7.50329142124101	7.91439830343028	7.61859824587158	7.85601921410882	7.9705767122432	7.38151286177633	0.108666805073687	0.687811848011861	0.917193226920892
Merged-chr1-84318789-4	chr1	84318298	84319298	+	902.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.76517271847524	5.17637070945497	4.91873408138485	4.80714261015487	4.93065103634708	5.42024779816409	0.215181799375369	0.610196117675083	0.885445198275406
Merged-chr1-71731167-4	chr1	71730665	71731665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77830.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	3.26389401702647	3.23464670422822	3.57510375681535	3.16070347286465	3.08807792932448	3.33579152053928	-0.682107559411717	0.287064671838141	0.684323804399215
Merged-chr9-55296511-4	chr9	55296004	55297004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-12879.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	5.37968670220259	5.49912159032808	5.17183486202912	4.9549258807793	4.57727345645589	4.91556777116906	-1.16459719337514	0.00267932299191152	0.0386446710887457
Merged-chr11-98942900-5	chr11	98942372	98943372	+	931.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3161.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	7.2049325403563	6.76997484352049	6.60812300065135	6.99206127169527	6.65967809300175	6.61458047986512	-0.195696744941064	0.511936959229047	0.841619835183182
Merged-chr19-17264890-4	chr19	17264277	17265277	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74728.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.67818454105325	5.59153134794636	5.48905854282449	5.90944433708247	5.69488698248669	5.69534303014327	0.323933725459941	0.308924519636885	0.70476767553933
Merged-chr10-94577672-3	chr10	94577145	94578145	+	822.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	CYRA11_Mm|Unknown|Y-chromosome	1382.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.73403838452402	5.73863744954902	5.64480002318015	5.21006141235618	5.01573902995314	5.30074520547913	-1.05416798426868	0.00179014905565515	0.0283669248948683
Merged-chr11-84129588-4	chr11	84129053	84130053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172562)	promoter-TSS (NM_172562)	15.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	5.86006368889916	5.463594340472	5.33866251071158	5.68976201649191	5.14929597193199	4.83018573609415	-0.572762505026568	0.180819431082819	0.562895103503281
Merged-chr8-111551971-1	chr8	111551471	111552471	+	666.0	f0_balb.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	13628.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.14906934917894	4.35440899310582	4.0867494553894	4.01984372200501	3.78141290487386	4.2016974196732	-0.594275460711156	0.240049028539016	0.637057344576547
Merged-chr6-24600277-3	chr6	24599763	24600763	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053098, intron 1 of 2)	intron (NM_053098, intron 1 of 2)	2492.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	3.25921630825062	3.3312508625346	3.19900769021125	3.11301768857863	3.2776690693636	3.43733044906545	0.0469655690805682	0.94044368136079	0.98684811092327
Merged-chr8-69395568-4	chr8	69395086	69396086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038043)	promoter-TSS (NR_038043)	-42.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	6.0703015513144	6.44393931594913	6.05234621810044	6.28984036702025	6.00822478168273	5.99582722216519	-0.175487928722391	0.570754160285465	0.869253690275099
Merged-chr2-39006286-3	chr2	39005780	39006780	+	715.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1149.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	4.40124854206416	4.13238000769518	4.32284716403966	4.12151834052904	4.41007509254161	4.47396716782352	0.142855838029162	0.760038515512107	0.940572672765463
Merged-chr7-98711717-4	chr7	98711231	98712231	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8484.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	6.95644072453629	6.89173511483536	6.16846831896988	6.28622893040136	6.57298748277355	6.20703157226326	-0.569634927541301	0.0861787960485211	0.388849046234225
Merged-chr4-57028133-4	chr4	57027637	57028637	+	892.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355492, intron 18 of 24)	intron (NM_001355492, intron 18 of 24)	-37746.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	4.87612099075184	4.74109661772257	4.31877890559854	3.82603897311754	3.66732160904914	3.98954464229538	-2.48135318572028	2.14353573639134e-06	0.000106166262829554
Merged-chr8-27259612-2	chr8	27259112	27260112	+	664.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-715.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	4.8212830120563	4.75368570512176	4.73799781295219	4.56024890941113	4.86913618709923	4.84160126291964	-0.0149556596980693	0.97041321951346	0.993459421031373
Merged-chr10-117836015-2	chr10	117835515	117836515	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	9959.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.65175423494629	5.64727225138421	5.7244910192029	5.75574089949867	5.98036763504688	6.08840628004872	0.490619925524181	0.113355721354899	0.449747418581844
Merged-chr17-27056384-4	chr17	27055865	27056865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-939.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	6.61815693407545	6.49918772894217	6.70558807751498	6.20896348325535	6.46295724301624	6.22742787841174	-0.471968266700095	0.087856557602284	0.39328429335974
Merged-chr6-115994515-3	chr6	115994056	115995056	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	449.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.9865451661973	4.64663131005283	4.7460970931659	4.40032521166125	4.5743633589233	4.57145662761103	-0.677158799316365	0.109432925298391	0.442002565323456
Merged-chr10-17722415-4	chr10	17721902	17722902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-826.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.57332028655267	7.01698437075769	7.37747904437655	6.86949680863867	7.16330168148339	7.11487671191724	0.0486133907676344	0.87305089009924	0.970371929331986
Merged-chr9-106447636-4	chr9	106447143	106448143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110272)	promoter-TSS (NM_001110272)	35.0	NM_001359225	68644.0	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	4.68178352837543	4.15349080192759	4.13486376457769	4.63950473742512	3.99095064319172	4.75650359608626	0.36822459980739	0.498421783568633	0.833865667012175
Merged-chr17-28736116-5	chr17	28735604	28736604	+	708.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	PB1D10|SINE|Alu	-33213.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	4.70625839747986	4.83295174611914	5.00576598878317	4.69150531442757	4.56193167274752	4.6714866678304	-0.482234795253768	0.233556930751595	0.629836294896575
Merged-chr2-160368051-4	chr2	160367548	160368548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-983.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.71819404663915	6.34117549219224	6.72949565302916	6.67097519873372	6.56622522530674	6.72692911887092	0.0776994990045367	0.778373104434047	0.945441651271158
Merged-chr17-35161654-2	chr17	35161154	35162154	+	861.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020027, exon 5 of 31)	exon (NM_020027, exon 5 of 31)	3223.0	NM_001199044	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	2.48787924775204	2.49008095154919	2.9513248292829	2.59371137694625	2.44716964212393	2.73821387322787	-0.334976194358468	0.681569234620924	0.914739226459981
Merged-chr1-178317248-2	chr1	178316748	178317748	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER5|LTR|ERV1	-1905.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	5.52972597847014	5.39918507903382	5.01148406100916	4.9130815309375	4.85845123851977	4.88524270934444	-0.960365115733786	0.0120616087093892	0.114673484631039
Merged-chr7-142391320-3	chr7	142390867	142391867	+	741.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3497.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	6.21755457402103	6.35126813751124	6.59837168812446	6.59539486070071	6.56870835612	6.85118318016952	0.453195195588196	0.106462254535049	0.435650205338466
Merged-chr1-187215918-2	chr1	187215418	187216418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	175.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	6.83154936119299	6.88745786017017	7.10400231920135	7.16464692286101	7.16484857370253	7.12450704130084	0.325588901864038	0.180350828268108	0.56217246267074
Merged-chr15-66561074-4	chr15	66560567	66561567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172514)	promoter-TSS (NM_172514)	-21.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	7.88251685197732	8.38348461803325	7.69702516908339	7.80404345480141	8.09519843951694	7.49056045840032	-0.285065340483761	0.329638623534726	0.721443767249993
Merged-chr8-25975395-3	chr8	25974863	25975863	+	808.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	1381.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	5.13713004972749	4.77778196526068	5.18613669248929	6.06150473245285	6.19355310462578	6.02085575910128	2.01162339445967	4.24695876540073e-09	4.2019137330733e-07
Merged-chr17-33956243-1	chr17	33955743	33956743	+	939.0	f0_balb.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	153.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	7.63617322634543	7.73676806041134	7.25318413020832	7.53862469532157	7.87316817291883	7.6044208106848	0.171051836279499	0.506282803410248	0.838365362350894
Merged-chr13-56711959-4	chr13	56711479	56712479	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164042, intron 1 of 6)	L1MB7|LINE|L1	8311.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	5.92684396492275	5.76234682002042	5.49919603098856	5.87033483094236	6.19112500724116	6.06127416214944	0.52471943996168	0.10420147850592	0.430549042780841
Merged-chr9-40709407-3	chr9	40708815	40709815	+	944.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	23351.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	6.57842448234066	6.04970137001879	6.30851630711812	4.26955360516209	3.81475352493183	4.48896677055375	-5.41685122352585	2.75200327683518e-21	2.28988688658901e-18
Merged-chr8-119436250-4	chr8	119435760	119436760	+	949.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-902.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.84105310093161	6.75068993801985	6.9639993540619	7.19771387954728	7.21561335478447	6.90929443535425	0.420364512774754	0.0963496485753492	0.413790380638406
Merged-chr5-36560357-3	chr5	36559839	36560839	+	793.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	22058.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	3.71044929677932	3.55808509413059	4.03785221504836	5.85141860418985	5.75088102830327	5.67969287386731	6.67744257436542	3.62408667633766e-14	8.92168651374864e-12
Merged-chr11-70944777-3	chr11	70944271	70945271	+	867.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083331, intron 12 of 16)	intron (NM_001083331, intron 12 of 16)	25202.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	5.56735753374018	5.46367865207069	5.54530239161487	5.93426893385217	6.17258060715378	5.69452722385028	0.793136859447338	0.014818962219226	0.13149794266155
Merged-chr13-55373315-2	chr13	55372815	55373815	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360714, intron 1 of 14)	intron (NM_001360714, intron 1 of 14)	3583.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	2.603865746335	2.56335604753668	2.66460570330493	2.64415633025612	2.45673469533373	2.79807985016184	0.13944522710621	0.857027689611474	1
Merged-chr1-64122231-4	chr1	64121719	64122719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-830.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	8.99050636937462	9.21807995005619	8.60146705002732	8.65312409853896	8.91569795714356	8.67184089800791	-0.290723961832042	0.23453796064364	0.630628663776774
Merged-chr3-95633968-2	chr3	95633468	95634468	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	8988.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.76491173220008	7.00548824589194	7.05372411232187	6.7570685793411	7.193532193828	6.88032553718829	0.0342696435171317	0.899744737941592	0.976696214864058
Merged-chr11-61638977-4	chr11	61638476	61639476	+	894.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	-14345.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	4.07413855242807	3.9885614539981	3.58299219415592	3.68563877617542	3.50286901956071	3.76677431200931	-0.842468678720828	0.139156474821367	0.498404440295125
Merged-chr18-37955014-4	chr18	37954492	37955492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	-4.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	6.01656044395318	6.26723582811194	6.1885004373398	6.13778812513838	6.38278352436168	6.24874239913027	0.174146009458827	0.545419883387564	0.858101982622001
Merged-chr1-78537718-4	chr1	78537212	78538212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	26652.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	5.99253730212891	6.32605942016773	5.3854182002251	5.39708544613052	5.34604905437411	5.16388583757785	-1.2167604240272	0.0017953140236448	0.0284221351850473
Merged-chr11-97547105-5	chr11	97546607	97547607	+	800.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	CpG	28019.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.74499910979357	3.47994828238318	3.69889066187986	4.31264690583118	3.97512554415536	3.87927302286912	1.35264209692292	0.0139177059435499	0.126274613035754
Merged-chr16-94608815-2	chr16	94608315	94609315	+	691.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2604.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.82393675718319	6.98026096430772	6.5526675577593	7.01416866515277	7.13263656813212	6.86189465428611	0.315840073164462	0.237488659876945	0.633929426090698
Merged-chr19-40629122-4	chr19	40628616	40629616	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	16750.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.59123672423785	5.73848604090505	5.80599212618467	5.51158855272123	5.61420920464181	5.74376148854148	-0.163469335123998	0.608116191443854	0.884889830936802
Merged-chr15-41789578-4	chr15	41789016	41790016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	1.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.69143391519505	6.82676612210063	7.19164761414694	6.43536967553772	6.33967525475094	6.34879772421937	-0.85101499259729	0.00253971443648598	0.0371723058629948
Merged-chr15-85090945-4	chr15	85090452	85091452	+	798.866638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080470, exon 17 of 25)	exon (NM_080470, exon 17 of 25)	41005.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	6.47073000893502	6.7789389401388	6.73737652943607	7.18373425188603	7.3856968905967	6.7312313372409	0.738361139133292	0.0116086719135237	0.111681624763612
Merged-chr3-14880535-4	chr3	14880045	14881045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5724.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	4.19822389050058	3.66851413167971	3.92355450770665	3.79407882422326	3.78856192714255	3.84221579863403	-0.447956247175644	0.411013605869292	0.783785606749474
Merged-chr7-128302355-4	chr7	128301860	128302860	+	854.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4229.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	3.6473918922178	3.40835536056067	3.4805377585139	3.44279485733663	3.312268978016	3.60431388140901	-0.246521469019311	0.677132832091268	0.912699165331091
Merged-chr14-31428366-4	chr14	31427877	31428877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7723.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.07012928654116	6.0089460674074	5.8129076389532	6.03851226667264	5.76940702965446	5.9248008362602	-0.114849480296271	0.706663374274606	0.923092605686828
Merged-chr12-80083826-2	chr12	80083326	80084326	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29187.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.88585922780243	3.85529511514914	3.89566975234021	3.90706454163307	3.6829781198552	3.76089810316616	-0.299359872131128	0.565005411246684	0.866552670637515
Merged-chr2-154256248-4	chr2	154255722	154256722	+	778.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-1657.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	6.03807340011419	6.15117698633134	6.39259839178241	5.73413638091499	5.85065701540877	6.06590934947839	-0.536536453481302	0.0809055780608102	0.376362237339067
Merged-chr2-51934993-4	chr2	51934530	51935530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141982)	promoter-TSS (NM_001141982)	133.0	NM_030243	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	6.5081219548131	6.62071291284306	6.39722931683183	6.39937251009567	6.58614764511775	6.54777733668356	-0.00522310287617172	0.984419082661612	0.996599907898766
Merged-chr14-55763643-5	chr14	55763142	55764142	+	858.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020490)	TTS (NM_020490)	2214.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	6.3530522347796	6.55322176280169	6.59514943159222	6.50488811714995	6.91672921240206	6.7027829845284	0.357284272658264	0.199085296459126	0.587481591514486
Merged-chr11-116854708-2	chr11	116854201	116855201	+	981.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 2 of 12)	intron (NM_178620, intron 2 of 12)	701.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	5.6344849163248	5.97349009646962	5.36975476901304	5.67463927796946	5.79224960607231	5.33300511318895	-0.128133067616658	0.727023193476483	0.930092984118427
Merged-chr14-31494627-4	chr14	31494144	31495144	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	114.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	8.52758509414442	8.66251307600182	8.00452359398749	8.38952948450939	8.73099007086602	7.83966577787321	-0.0746035923690945	0.808148875420512	0.954620911486066
Merged-chr9-107982823-4	chr9	107982310	107983310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 21 of 23)	intron (NM_023738, intron 21 of 23)	3106.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	6.22291621540142	5.99287723222262	6.06118050845842	5.96309538686754	5.86250382087504	6.2836468992099	-0.105443603315463	0.73160467690366	0.931479001094019
Merged-chr8-119784449-4	chr8	119783950	119784950	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6034.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	4.58227915186235	4.6692043354134	4.52670793092223	4.55362931070882	4.63145116837892	4.37056223352665	-0.158913786916488	0.708732889255032	0.92375127577894
Merged-chr9-116146643-3	chr9	116146191	116147191	+	703.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	28672.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.52230631392216	6.67752963553294	6.74083810520675	5.69752459524181	5.63429003136897	5.85539855070909	-1.56814590420686	5.25323073440696e-08	4.03984124721381e-06
Merged-chr4-95416862-4	chr4	95416360	95417360	+	974.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140647.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	4.46189296398493	4.70203970843946	4.66606894976465	4.62615183743329	4.67503407277736	4.390660383663	-0.0808670176952812	0.850293324440291	0.964858782843783
Merged-chr16-65450867-4	chr16	65450361	65451361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69768.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	5.40956616322434	5.70602569157244	5.5744800159966	5.68432176949338	5.79305845723943	5.52135441084614	0.203653165267426	0.537025964554626	0.854296953669968
Merged-chr17-7897319-4	chr17	7896731	7897731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28769.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.77394959088424	5.6003389473692	5.36695409296623	5.65482959819525	5.81851993295698	5.52580203777409	0.147037938631179	0.662693799221207	0.906804932599005
Merged-chr4-33283845-2	chr4	33283345	33284345	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-26466.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	3.53956416455996	3.49807332679001	3.41502174721112	3.47255221031401	3.35238322252205	3.54116356790422	-0.135791642022418	0.815008088811138	0.956370078970016
Merged-chr6-122599403-5	chr6	122598833	122599833	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	3111.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.5042077742949	7.27449867209261	7.1014904634567	7.75040463874771	8.13320526810586	7.53607740367959	0.769315540158359	0.00471813784441514	0.0588233164156571
Merged-chr9-22531394-3	chr9	22530882	22531882	+	741.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	MTEa|LTR|ERVL-MaLR	55667.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	2.76008017526336	2.93724447896564	2.91391469397129	2.85774488834101	2.44656901853672	2.74197876546885	-0.950436955019187	0.232525216084522	0.628804775351458
Merged-chr15-100743475-4	chr15	100742981	100743981	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10744.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	3.43152781377544	3.34701414349899	3.35630118656072	3.61427306630343	3.52060384029165	3.53978067492953	0.668601230881224	0.246949046786745	0.644045601901006
Merged-chr17-45734121-4	chr17	45733645	45734645	+	878.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	-301.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	2.85826858886192	2.66720513690854	2.79902118742714	2.67228778019597	2.71998208482921	2.55236504606515	-0.657082052215059	0.387875834459659	1
Merged-chr6-85915034-2	chr6	85914534	85915534	+	547.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170488)	promoter-TSS (NM_001170488)	643.0	NM_023160	66116.0	Mm.13036	NM_023160	ENSMUSG00000057103	Nat8f1	1110002I11Rik|AI266962|Cml1	N-acetyltransferase 8 (GCN5-related) family member 1	protein-coding	4.88355925719388	5.34282693071155	5.33319278656447	5.06790871174764	5.28161436149248	5.03749886320803	-0.120841471869972	0.75498044624519	0.939180610396804
Merged-chr5-33996045-2	chr5	33995545	33996545	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001985)	promoter-TSS (NM_001001985)	61.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	3.37028007260841	3.55193045875778	3.43815943672989	2.92678330577609	2.82823371367026	2.84820347246634	-2.92769123324462	0.000125144278965318	0.00343097369494108
Merged-chr2-49372184-3	chr2	49371684	49372684	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79302.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	2.49500866448699	2.35242419894596	2.64908507803618	2.52200199127735	2.44248619321673	2.72208251321274	0.367844704817452	0.647921972675201	1
Merged-chr2-27475700-4	chr2	27475216	27476216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-43.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	5.67456137127847	5.68045731280301	6.28200948102653	5.76336942735862	5.6679717530741	6.11557465114219	-0.0799310936709917	0.823600660962932	0.958451715155168
Merged-chr7-100242556-4	chr7	100242052	100243052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	14945.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	6.59215070471929	6.48269387308053	6.54453434795218	6.51638378554357	6.83834007988987	6.65432508233751	0.227008042644128	0.394338872378423	0.772286791085834
Merged-chr10-30673876-1	chr10	30673376	30674376	+	554.0	f0_balb.idr	intron (NM_001358842, intron 9 of 14)	MER90|LTR|ERV1	-18009.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.01393960648508	4.04694103583061	4.36092799613328	3.96268565446309	4.0244799318851	3.98369952487405	-0.430463517458136	0.38589111992209	0.76671430326601
Merged-chr10-85957798-4	chr10	85957278	85958278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145422)	promoter-TSS (NM_145422)	15.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	6.70114268642851	7.03078541099083	6.81847936685058	6.74097092111279	6.85684495581944	6.75445499591481	-0.112542690712649	0.664372374253751	0.907585158243155
Merged-chr3-87908982-1	chr3	87908482	87909482	+	555.0	f1_balb.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2132.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	4.37664649218713	4.35392381807603	4.58297495917302	4.53008162882713	4.42187665404444	4.83140483163849	0.397874155065427	0.368443084576236	0.753382945013134
Merged-chr4-15987370-4	chr4	15986867	15987867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 13 of 15)	Lx9|LINE|L1	26471.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	4.82874214018786	4.8545071741456	4.62020563657529	4.87278151837704	5.17797111220602	4.68856391500404	0.365744867971002	0.377935225169239	0.760236986300041
Merged-chr9-110985784-3	chr9	110985290	110986290	+	813.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153100, exon 3 of 3)	3' UTR (NM_153100, exon 3 of 3)	-3709.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	5.14306097770886	4.38196981707603	5.02016109220023	4.67427652728823	4.48716715817298	4.88024290070496	-0.465523283715815	0.320248744585952	0.714116509165426
Merged-chr17-87596697-1	chr17	87596197	87597197	+	614.0	f0_balb.idr	Intergenic	RLTR45|LTR|ERVK	-39282.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	2.44622877718044	2.40147484321959	2.66208748617378	2.15306273901366	2.09765738597527	2.30028565752323	-2.43930943403968	0.01124217063004	1
Merged-chr11-49702235-2	chr11	49701735	49702735	+	971.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_212484, intron 2 of 11)	intron (NM_212484, intron 2 of 11)	419.0	NM_001290741	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	4.17353477824657	3.99987110067987	4.23679604470143	4.27906249675483	4.07660088805758	4.73041511309209	0.652742571598847	0.195442137736387	0.583096846154808
Merged-chr3-52755124-4	chr3	52754594	52755594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	MIR|SINE|MIR	15370.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	4.08051469241201	3.79800461528537	4.11728544147843	4.55032820698377	4.41052238553451	4.3259732205242	1.20197924174724	0.0124263956679438	0.117124550378146
Merged-chr11-69092933-4	chr11	69092419	69093419	+	830.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009497)	TTS (NM_009497)	4391.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	4.53781115082938	4.4693532526681	4.58557177460681	4.76260981020644	4.8403065441184	4.69260469943311	0.584434003652214	0.149994907620596	0.516609804764046
Merged-chr9-109118271-4	chr9	109117786	109118786	+	986.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172775, exon 38 of 38)	3' UTR (NM_172775, exon 38 of 38)	22850.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	4.68352289226826	4.39857325614392	4.87468874211318	4.19187407414519	4.28875002541917	4.12500014376291	-1.14938818664968	0.0142593282299218	0.128338581217451
Merged-chr3-95663648-2	chr3	95663148	95664148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008562)	TTS (NM_008562)	4927.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	6.23384516777848	6.05099915701103	6.36900179143748	6.43116316208896	6.68233755284337	6.35230202975412	0.475810235671136	0.0980176678388739	0.417372146870641
Merged-chr2-59396859-3	chr2	59396359	59397359	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10177.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.4811067013664	4.29482218590387	4.81290241332728	4.23152795762712	4.15242074787729	4.29930159677759	-0.812813177588799	0.0833034820856852	0.381943803029848
Merged-chr9-118867225-2	chr9	118866718	118867718	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	MIR3|SINE|MIR	-59318.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.83731372259428	4.51936451000488	4.58170811971927	4.4565252683208	4.4246873325838	5.04000011939394	0.00984305310437534	0.98301926367855	0.996200895077944
Merged-chr13-37963589-4	chr13	37963080	37964080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30628.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.83452913650322	5.53224874869543	5.91952926409958	5.65834221621761	5.39914240778725	5.66383002649601	-0.358126078394753	0.285619490599804	0.683152802436807
Merged-chr10-77978572-4	chr10	77978098	77979098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026431)	promoter-TSS (NM_026431)	-52.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	6.10233465928735	5.77553633357082	5.76468619920579	5.65270716979104	5.5775023319518	5.51911751833228	-0.563494676463249	0.0805703321976969	0.375560731791894
Merged-chr9-101076668-4	chr9	101076175	101077175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1913.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	6.78228476919859	6.84316323500657	6.73296968313816	6.72165271144241	6.74127266966372	6.92373189114921	0.00444027758786001	0.985894921293678	0.996977600359987
Merged-chr14-57889819-4	chr14	57889314	57890314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	CpG	522.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	7.86547287765178	8.23244467876231	7.8139532945756	7.92323033232614	7.92366034039494	7.82804572627469	-0.137480496264619	0.559325572764307	0.864901733108576
Merged-chr2-24386483-4	chr2	24385951	24386951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	-165.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.59565882470533	6.70394370522748	6.68687756625697	6.84162841603091	6.6424304522006	6.80704123298997	0.15708035152516	0.538265752504243	0.855080856348593
Merged-chr13-23712188-4	chr13	23711677	23712677	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1323.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	5.62530247793339	5.38591688441485	5.58480161419477	5.51577856605054	5.94726128464526	5.7535448052555	0.415713532631636	0.216766926605934	0.61037688227024
Merged-chr13-38634530-3	chr13	38634032	38635032	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139063, intron 1 of 4)	intron (NM_139063, intron 1 of 4)	577.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	5.43719256315341	5.42147906706208	5.76676450538254	5.54200653546074	5.43702026456435	5.36374377238346	-0.167262103827863	0.623060384406623	0.891251075175817
Merged-chr4-83273914-4	chr4	83273397	83274397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	50292.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	7.34071822678321	7.35959064231161	7.44892496626619	6.98496633529616	6.9121711809501	6.98026826717223	-0.63764436347239	0.00611069218436964	0.0706985143489601
Merged-chr10-14207863-4	chr10	14207362	14208362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	241483.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.0028434124757	4.89638932194082	4.59817089111907	4.63126735670337	4.61817432038373	4.6658106647538	-0.50337192659865	0.220309552399365	0.614697781371014
Merged-chr13-40844319-4	chr13	40843821	40844821	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15447.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	3.50078272553774	3.20875370264456	3.4848792780059	3.52448402311906	3.45261895777047	3.75822857145248	0.647227498710157	0.281846342660958	0.679908771156903
Merged-chr10-19015411-4	chr10	19014909	19015909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009397)	promoter-TSS (NM_009397)	1.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.88379982431864	7.90714481689103	7.54236128769413	7.84646418839358	8.07350669064242	7.36690315070537	0.0174984005734555	0.949637260434255	0.988243921877722
Merged-chr9-21287905-6	chr9	21287382	21288382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	87.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	7.62828941876923	7.47175356616747	7.54571533871326	7.30337973717583	7.53930372282048	7.43106608064779	-0.173948099955637	0.449469512000602	0.807784692395241
Merged-chr14-22847830-4	chr14	22847319	22848319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	246752.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	4.84463681712343	4.84054548866995	4.83835753394609	4.51068292489202	4.23371567155252	4.51071234942688	-1.03736938673608	0.0138219766350498	0.125638959127073
Merged-chr4-59354615-3	chr4	59354109	59355109	+	837.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	MLT1D|LTR|ERVL-MaLR	84024.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.12874117875219	5.24230334258746	5.27303179186622	4.74710021603167	4.60640726596507	4.98105878509075	-0.960818591723701	0.0125970572806472	0.118247961098887
Merged-chr16-91730742-2	chr16	91730242	91731242	+	896.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1371.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	6.42479842993312	6.54581924515352	6.30162078082797	6.94816403690131	6.93718877247641	6.55673898192927	0.634342655833166	0.0217776878642587	0.170877899904468
Merged-chr11-78826565-4	chr11	78826056	78827056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076681)	promoter-TSS (NM_001076681)	-39.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	5.70053858351538	5.67529850036703	5.89061923585478	5.52818815930108	5.76177744455955	5.65293242982415	-0.175279860087285	0.582319393647116	0.873702353685426
Merged-chr6-72167233-2	chr6	72166738	72167738	+	678.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-44041.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	1.69462525754946	1.59480441288076	1.81284754942341	1.49532139644603	1.46603102569265	1.4706625018802	-2.66810803528377	0.033497147503168	1
Merged-chr7-80745478-1	chr7	80744978	80745978	+	678.0	f1_c57bl6.idr	intron (NM_016721, intron 15 of 37)	intron (NM_016721, intron 15 of 37)	-56601.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	2.92189675341001	2.74575378548722	3.29532998066863	2.68761728343207	2.69462236003653	2.81081372232255	-1.35860663570298	0.0753909568450496	0.36159125428477
Merged-chr18-25242382-3	chr18	25241888	25242888	+	896.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	73368.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	4.67341376454253	4.70621808925975	4.76161776232917	4.44316679699101	4.30599992332695	4.82633235720585	-0.442684880208461	0.312212738401381	0.707054529881391
Merged-chr4-55964192-4	chr4	55963695	55964695	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-431720.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.00808993092964	4.18167465265294	4.38081966741527	3.86985011047264	4.1763201436255	3.95132900498601	-0.507941533334304	0.318254792994548	0.712017229928219
Merged-chr9-118672918-2	chr9	118672390	118673390	+	831.833313	f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 11 of 28)	exon (NM_133721, exon 11 of 28)	-38802.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.31094716299612	5.86570239100733	6.48174819886817	6.15393325940888	6.40353635396345	6.26635297904926	0.0771473429202516	0.807503169583254	0.954557080558103
Merged-chr1-191067868-2	chr1	191067368	191068368	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	4847.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	2.9811419708638	3.2049119891893	3.2320618668315	3.50584192017769	3.33112379037587	3.62636846523469	1.39843501307928	0.0294935311518466	0.206557002204535
Merged-chr7-16874353-4	chr7	16873850	16874850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	536.0	NR_152128	320950.0	Mm.420078	NR_152128	ENSMUSG00000097842	9330104G04Rik	-	RIKEN cDNA 9330104G04 gene	ncRNA	6.67734888239021	7.30559628780059	7.04991685503346	6.69494464091547	7.43878598777821	7.04236708736902	0.0965966854487984	0.763806079370845	0.941828088296049
Merged-chr2-90467496-2	chr2	90466995	90467995	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	MTB_Mm|LTR|ERVL-MaLR	11679.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.53511007320024	2.75715996085233	2.96112339522603	3.02501354123128	2.73211683466606	2.9756642684795	0.780183086878517	0.308859834508269	0.70476767553933
Merged-chr15-28395889-4	chr15	28395401	28396401	+	912.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 58 of 78)	(TTC)n|Simple_repeat|Simple_repeat	192135.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	3.94263698063684	3.89067027858914	4.07779232795312	3.88768887718029	3.7358132885972	4.18881259617055	-0.0866265649105681	0.868339354876838	0.969642939011354
Merged-chr9-72111213-4	chr9	72110672	72111672	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	29.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.84343077313439	6.94089212190598	6.6271943814809	6.72589154779652	6.32937015768562	6.39349261766921	-0.510056992311976	0.0692860087424034	0.344435917102623
Merged-chr18-67243149-4	chr18	67242665	67243665	+	838.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172630, intron 2 of 10)	PB1D11|SINE|Alu	2665.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	4.71636675723053	4.56133573887034	4.85734915746761	5.38438232085803	5.26193236043941	5.4128573300479	1.38151973331141	0.000242960658270731	0.00585978853721477
Merged-chr5-135393404-2	chr5	135392904	135393904	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148932, intron 1 of 12)	ID_B1|SINE|B4	1142.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	3.61341493950882	3.59831995971609	3.60880666998368	3.6031559107261	3.30972821538196	4.18193614282831	0.458698093389139	0.469129375900969	0.818899830283793
Merged-chr13-29986210-4	chr13	29985693	29986693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010093)	promoter-TSS (NM_010093)	-130.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	6.53955671507665	6.55527654577086	6.28950042910557	6.41971239383083	6.61924475965473	6.22224618231592	-0.0515982617926323	0.856868811527878	0.966628636076984
Merged-chr18-50024196-4	chr18	50023715	50024715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-6769.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	6.2338063361798	6.37587925724284	6.31092595306594	5.89752506211577	6.05619639657061	6.17117995933222	-0.450022981458735	0.114892665964901	0.452572495414372
Merged-chr15-73632447-4	chr15	73631961	73632961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7717.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.07513161746969	5.99301468088467	6.34666066185099	6.10673763237729	6.25309830641644	6.01486080382862	0.000390237108787946	0.998955382751364	0.999832555337409
Merged-chr6-97453359-3	chr6	97452873	97453873	+	925.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	5913.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.85029785224267	6.74388978529286	6.68756639062104	6.74318791804404	6.88312567408174	6.86876137640237	0.105375628459635	0.67372088569843	0.911635961678937
Merged-chr6-37431525-4	chr6	37430996	37431996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	(CAGAGA)n|Simple_repeat|Simple_repeat	10652.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	5.550797920578	5.39924423932852	5.29787668631049	5.46354428661033	5.21362782719261	5.29717565347252	-0.196082779535037	0.570700310183595	0.869253690275099
Merged-chr18-61106843-4	chr18	61106400	61107400	+	874.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	1328.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	7.11982889604919	7.38980093729868	7.57702609553576	7.71422974326181	7.89323245566418	7.79167250267004	0.632237802067536	0.00943490586226045	0.0965675258624616
Merged-chr7-78847278-4	chr7	78846763	78847763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029585)	promoter-TSS (NM_029585)	-52.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	7.50001763641607	7.8516141246387	7.75344557311515	7.73902717982815	7.45176335002748	7.07883821871831	-0.364975922406796	0.183024817153107	0.566075492906951
Merged-chr1-43234827-1	chr1	43234327	43235327	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-38066.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	2.90648254776822	2.86123192645328	3.22470031629382	3.00397979269633	2.74575682064098	3.34726420685074	0.213381184063646	0.773419362701636	0.944073794235887
Merged-chr13-91808359-3	chr13	91807865	91808865	+	897.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145453)	promoter-TSS (NM_145453)	-669.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	6.17933183949413	6.15840733559641	5.94421149690517	6.18126366417598	5.9307404809124	5.95703938423752	-0.134786917967964	0.650025703378022	0.902475350617976
Merged-chr5-137858138-4	chr5	137857639	137858639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-90.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	5.47305365412274	5.35873458068357	5.48095703317117	5.60770240873552	5.35377793884054	5.65237608010867	0.190016285995573	0.571659854523561	0.869547320544841
Merged-chr16-94573129-2	chr16	94572629	94573629	+	728.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	2222.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.18736322486747	3.82642270065313	3.80954865598524	4.33365666785734	3.94629554475572	3.88199226264857	0.330779646685513	0.540613521951713	0.856401971110652
Merged-chr15-58324236-4	chr15	58323709	58324709	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177755)	promoter-TSS (NM_177755)	-40.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	6.61523260781106	6.862562106754	6.01487756240569	5.96907299334027	6.27013739653535	5.89597975434017	-0.809402137616915	0.0193535890691584	0.158019177633847
Merged-chr13-49205635-4	chr13	49205143	49206143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	MIRb|SINE|MIR	10383.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	7.22506869044348	6.88150327301569	6.70833844859696	6.91202194741905	7.09725100276303	6.78368061048191	-0.0312998321712877	0.910437435179458	0.97984424692051
Merged-chr17-35135859-1	chr17	35135359	35136359	+	1000.0	f0_c57.idr	intron (NM_001252469, intron 1 of 23)	intron (NM_001252469, intron 1 of 23)	145.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	8.41476525222346	8.242398588754	7.94172588826393	8.27185316453176	8.43583527439573	8.08936595356589	0.0811420188335541	0.736275866533666	0.933099240232035
Merged-chr18-4032545-4	chr18	4032048	4033048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-133284.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.95540423787237	4.48759750882818	4.24861080465792	4.28946268305524	4.214571266069	4.40365453607324	0.125316900759606	0.798071582473925	0.951930937621884
Merged-chr14-103844519-3	chr14	103844035	103845035	+	684.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-59.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.11500770476286	3.26506783108075	3.34816648196689	3.12493039350255	2.9486074009665	2.88871658106749	-1.11699998839653	0.101310487631812	0.424516230689691
Merged-chr6-53286543-3	chr6	53286032	53287032	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-771.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.85915948260525	3.67909730544717	3.60558188898004	3.46077147304092	3.16882200899177	3.27165170601106	-1.59323420651707	0.00968902596660823	0.098350376788026
Merged-chr5-72172837-4	chr5	72172328	72173328	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4639.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	4.11682513405036	3.72155853060181	3.84831606626867	3.6939693380981	3.91239241418992	3.70669304673385	-0.401306119034936	0.463780079584885	0.816038286358001
Merged-chr10-24640800-6	chr10	24640361	24641361	+	990.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	45419.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.08938952303433	6.23539307215795	6.32994893746265	5.70124342331394	6.4022264604221	5.54565169279751	-0.439075555275254	0.237707304595144	0.634225619096145
Merged-chr2-173219762-2	chr2	173219262	173220262	+	816.071411	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-840.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	5.70704174958086	5.72621589965008	5.64875894621986	6.44132754876833	6.54968761411792	5.95602211890832	1.12971787695223	0.000383859392875672	0.00852406064650352
Merged-chr1-135283079-2	chr1	135282572	135283572	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1012.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	7.95202901005237	8.01597999347439	7.93898103310202	7.93721364040975	8.11357398690472	8.19135908015992	0.160087791770419	0.455347410242168	0.810901192351474
Merged-chr14-54883322-4	chr14	54882835	54883835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007537)	promoter-TSS (NM_007537)	-90.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	6.46642586123245	6.15338459005825	6.31209400912086	6.04593627125782	6.2913549020293	6.31384314681478	-0.157846163851093	0.586993218828704	0.875769926947203
Merged-chr5-31200813-3	chr5	31200316	31201316	+	958.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175311, exon 3 of 4)	exon (NM_175311, exon 3 of 4)	1226.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	7.51224896396504	7.54781894497479	7.2462671884063	7.46973131287761	7.67793138049593	7.22981667088646	0.0486237888568851	0.848132336441736	0.964318271116593
Merged-chr18-68218554-2	chr18	68218054	68219054	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	Lx8|LINE|L1	-9392.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.82383822083606	2.85745909583325	2.85450370716315	2.6801383276504	2.77182594558176	2.678537796115	-0.688708913803587	0.344318923014755	0.732980075743821
Merged-chr1-106643473-4	chr1	106642968	106643968	+	778.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	70822.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	2.71240803027227	2.97300989996357	2.69615190128905	2.94850551417308	2.99637001869232	3.02138832081114	0.886607789964285	0.224868770629779	0.619770807107078
Merged-chr10-88504018-4	chr10	88503516	88504516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-46.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	5.98128649813938	6.00590522252803	5.86207212588565	5.81577540146621	5.79277226355835	5.53861478065035	-0.399630705367524	0.196305025716124	0.584112516346026
Merged-chr12-39300548-2	chr12	39300048	39301048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	516837.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.18196243636428	2.3391609095846	2.32817861883063	2.39895514819068	2.45911361442744	2.59307316269105	1.29923924886028	0.125685883514112	1
Merged-chr4-138973555-4	chr4	138973073	138974073	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029857, intron 1 of 16)	intron (NM_029857, intron 1 of 16)	668.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	8.10476634160894	8.35202076088473	8.1410381026378	8.11119364335139	8.23857070942059	7.70053101562857	-0.225773747408022	0.359887617957513	0.746213030526008
Merged-chr1-152556204-3	chr1	152555696	152556696	+	872.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69021.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.49638717186625	6.37487319918883	6.68492016972064	6.23026557780592	6.22321400102009	6.61991480535639	-0.257066196456706	0.376809546457557	0.759405351360972
Merged-chr14-47351643-3	chr14	47351157	47352157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	-22203.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	8.42861164374751	8.50800001564575	8.42224779992675	7.72488030453725	8.14262670811003	7.45993648648577	-0.892402088862905	0.000614364768907603	0.0123532113185632
Merged-chr9-24514453-2	chr9	24513953	24514953	+	796.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11313.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.21383283842944	3.38412692162621	3.4520322566512	3.44138718514199	3.35379826817884	3.41393353473002	0.201537672998291	0.736351770120165	0.933131662450445
Merged-chr10-94116470-4	chr10	94115962	94116962	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-31469.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.45292807078292	3.39741291840203	3.47818624641997	3.83327095219239	3.70905650162002	3.91086802046531	1.31432638662837	0.0189778001361648	0.156007191635052
Merged-chr11-82746315-2	chr11	82745815	82746815	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009839, intron 5 of 13)	B3|SINE|B2	18006.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	4.82871527235848	4.96203858381277	4.49158187973823	4.42397385115934	4.37529563297521	4.72287849936563	-0.682747539754612	0.122593519931944	0.4684190479174
Merged-chr6-119358304-3	chr6	119357793	119358793	+	999.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355692, intron 6 of 7)	intron (NM_001355692, intron 6 of 7)	-27527.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	4.9970804613509	4.91013519210448	5.21456574144649	4.93990221584886	4.97900678438228	5.57773661251337	0.306239458066745	0.455535894392729	0.811007054664672
Merged-chr7-27449440-4	chr7	27448943	27449943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	1465.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	6.66512088769696	6.65416134729173	7.05584165901278	6.9220149396951	7.04712542096205	7.13795246675841	0.372723780040435	0.16036190681362	0.532965919658045
Merged-chr1-69688875-2	chr1	69688375	69689375	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2915.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	3.67542611712689	3.7435986829091	3.48683749339444	3.4086431741194	3.24323926325482	3.38685986056655	-1.13870480211911	0.0555318924029303	0.303036313159957
Merged-chr11-9011154-4	chr11	9010670	9011670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303532)	promoter-TSS (NM_001303532)	21.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	4.06292767424583	4.17991237424859	4.26089663279284	4.19786685502662	3.64130099144196	3.85003641521897	-0.740064567581719	0.166912477307149	0.542435988153521
Merged-chr13-95324798-2	chr13	95324298	95325298	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-27.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	5.33437312697064	5.6220613456768	5.16839241110055	5.10944310885527	5.3087211980091	4.61826709256534	-0.676281340255875	0.111515632551942	0.446083974490746
Merged-chr18-23811994-3	chr18	23811544	23812544	+	768.377747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8074.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.2237804153863	6.28495821950325	6.38554936092703	6.38376389286845	6.35214942011582	6.4629762025395	0.167835736559026	0.534108824675399	0.852892987906084
Merged-chr13-44646062-4	chr13	44645569	44646569	+	915.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-84705.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.10744183247846	4.12460261180626	3.83545260755464	4.16808363526439	3.80962062738578	4.15544110204121	0.0338482971809597	0.947909581898364	0.988023646838258
Merged-chr4-108578413-2	chr4	108577913	108578913	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172697, intron 1 of 9)	B1_Mm|SINE|Alu	923.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	6.56170648942306	6.10571511760818	6.29393584064782	6.58429078243449	6.81463787705242	6.64544175189241	0.566671970987634	0.049167598454749	0.281778189422326
Merged-chr12-99884474-4	chr12	99883943	99884943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-72.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	5.74726639350249	6.0004946199336	5.80577772661093	6.10916299485623	6.28341167836645	5.91893270022553	0.456739376591655	0.138515477736491	0.497393227666922
Merged-chr1-191740758-2	chr1	191740258	191741258	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22363.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	4.50804562887232	4.35726326695047	4.4440900828131	4.6552382500948	4.75398199658185	5.09597772614884	0.957649398993343	0.0256043056746766	0.189662874261416
Merged-chr3-126829940-3	chr3	126829442	126830442	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	113444.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.19225258520645	3.99885803585011	3.64136786876858	3.42119243870667	3.31673427595827	3.60120202154438	-1.85349611396947	0.0020157972792801	0.0311562626128711
Merged-chr7-118275403-4	chr7	118274908	118275908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31501.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	4.38825444447063	4.49586307657413	4.28493831249607	4.6777013540199	4.38164813727515	4.10299801457948	0.0471333161517829	0.920947787876415	0.982463724790289
Merged-chr4-63586321-4	chr4	63585798	63586798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356354)	TTS (NM_001356354)	14466.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	6.73873102437003	6.77742118629535	6.07974219253457	6.6926884071124	6.73637023215868	6.14196561523146	-0.0323238216860287	0.924530425495783	0.982973950833402
Merged-chr15-57705878-4	chr15	57705365	57706365	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11198.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	6.17251812656816	6.09968070460098	5.86465217585143	6.36508560358727	6.45174340163695	5.67126356013261	0.275920962494361	0.426337978671509	0.793775990271191
Merged-chr10-93485236-2	chr10	93484714	93485714	+	972.583374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313897)	TTS (NM_001313897)	-3554.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	6.6841651271071	6.67108578195395	6.80760294090698	5.80715679415691	5.52290615971542	5.84212239318838	-1.69202630502892	5.90801032165026e-09	5.63108502684851e-07
Merged-chr2-125782785-4	chr2	125782287	125783287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177608)	promoter-TSS (NM_177608)	83.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	7.29532937779895	7.15383950529856	7.17813405720067	7.31923554576108	7.2865254035832	7.08272392801002	0.0413251648710583	0.862028091325947	0.967996224966109
Merged-chr12-110934859-3	chr12	110934360	110935360	+	815.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 10 of 20)	intron (NM_175336, intron 10 of 20)	43758.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	3.17198663907377	3.18007703461051	3.31820341034072	3.16182220883337	3.3240119358836	3.49250599843075	0.441582376270334	0.480310069817376	0.824543506620807
Merged-chr16-44140645-4	chr16	44140128	44141128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	819.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	8.59038137112926	8.90509754114107	8.49753763627948	8.44729387825461	8.8625528494813	8.58484828337601	-0.0457766453602625	0.847937449900236	0.964318271116593
Merged-chr9-20890691-2	chr9	20890191	20891191	+	588.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145610, exon 6 of 11)	exon (NM_145610, exon 6 of 11)	2516.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	4.24892611021149	4.37454294898464	5.01408422772536	4.87846526432004	4.99703835280033	5.31422058285971	1.11037597162785	0.0183512101797471	0.152803712262223
Merged-chr15-12117779-4	chr15	12117288	12118288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011767)	promoter-TSS (NM_011767)	-63.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	8.53134898112749	8.64269577033188	8.43229403529148	8.42157885782905	8.307240889512	8.21227233779126	-0.309961425972531	0.137835025579409	0.496256190057178
Merged-chr4-46389330-5	chr4	46388787	46389787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347095, intron 1 of 4)	CpG	136.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	8.44228289295224	8.83035328650405	8.23940941256862	8.6288537420573	8.86280323996242	8.11829091276394	0.0653201975572083	0.818417745144298	0.956956012168949
Merged-chr16-52093551-3	chr16	52093051	52094051	+	845.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	62002.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.37835749758564	4.68541118171672	4.5914200157189	4.8788473224758	4.9292948189033	4.89145205949607	0.795270480654026	0.0511762949534828	0.288364403771206
Merged-chr11-118227151-2	chr11	118226682	118227682	+	885.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-14440.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.813715643611	5.54854340124492	5.77373303961819	5.43799011365882	5.25992000912416	5.48964648041353	-0.612270340033155	0.0660772373887493	0.335492140981697
Merged-chr10-62215715-2	chr10	62215215	62216215	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	15503.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	5.70559430568751	5.49651689894955	6.00403166478686	5.47295777583615	5.36366618978487	5.47543895496993	-0.573875423844012	0.094477950829139	0.409742590044355
Merged-chr4-120055242-2	chr4	120054742	120055742	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-105964.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	3.27853423399238	3.19101213596851	3.10543161772151	2.87139365376232	2.97648479416899	3.05893976818548	-1.03675227711181	0.123600624047775	0.470544707581506
Merged-chr16-90283027-4	chr16	90282476	90283476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	1510.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	7.36493890061769	7.40517042681184	6.80232804828318	7.02296701538849	7.41202198332794	7.08246018365778	-0.0577439506452336	0.841458351518176	0.962949615089044
Merged-chr18-67491025-4	chr18	67490546	67491546	+	951.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176832, exon 14 of 14)	3' UTR (NM_176832, exon 14 of 14)	26197.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.10435702604341	4.22224662587725	3.60203976541104	3.75859645289166	3.75027744356902	3.79033761831214	-0.766723180331309	0.172541937097574	0.551127428100383
Merged-chr12-75596358-4	chr12	75595876	75596876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012024)	promoter-TSS (NM_012024)	-176.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	6.86075711630587	7.20200289848213	7.04427879015982	7.04548237905821	6.92093646497021	6.83482500315143	-0.160868668747577	0.529192368987582	0.850847288056475
Merged-chr11-5540325-2	chr11	5539825	5540825	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134033, intron 2 of 4)	intron (NM_134033, intron 2 of 4)	1892.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	2.3916837093665	2.54740463694481	2.66819126156323	2.48827090213566	2.41344243404263	2.42980400518305	-0.56963587646987	0.479846337172857	1
Merged-chr1-151307258-4	chr1	151306761	151307761	+	833.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37225.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.84161710231684	3.74554259879398	4.181492301413	3.78562905148876	3.7312325947034	4.20626886959824	-0.0367974110743405	0.946915575063867	0.988007649185823
Merged-chr15-102470433-4	chr15	102469914	102470914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001174073)	promoter-TSS (NM_001174073)	-218.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	6.55126191320354	6.57660786460388	6.48708279007768	6.53951981329152	6.54479102406349	6.59853736125795	0.0277358200102177	0.914108584280902	0.980894573251353
Merged-chr7-39517901-4	chr7	39517356	39518356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004139)	promoter-TSS (NM_001004139)	90.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	7.95770051225176	8.23050152854278	7.79401452575874	8.04938264851007	8.36438398384667	7.93389802000508	0.173690253766066	0.487720210712317	0.828597572185934
Merged-chr14-77037702-6	chr14	77037198	77038198	+	844.851868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175369, intron 1 of 5)	intron (NM_175369, intron 1 of 5)	926.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	6.7807885191438	6.74875402555734	6.59046714956873	7.69323712722656	8.06098596864892	7.60762529268669	1.62825436554822	2.94444727228482e-10	3.52622535888269e-08
Merged-chr5-92486927-4	chr5	92486405	92487405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	Lx8|LINE|L1	18752.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.13460576543681	7.16195670281983	6.87662168550256	7.0926950234618	6.99425765458919	6.79620230158836	-0.150551065062392	0.55491486128379	0.862989905297353
Merged-chr6-29474052-4	chr6	29473550	29474550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145360)	TTS (NM_001145360)	2613.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	6.04791096166054	6.41725419223741	6.64237725910581	6.30768313583691	6.61259239687905	6.19089022204112	0.014117997352018	0.964507635195843	0.991478598183903
Merged-chr14-66869739-4	chr14	66869231	66870231	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001034881, exon 1 of 1)	3' UTR (NM_001034881, exon 1 of 1)	881.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	5.56617461760792	5.75380895247897	5.5438306659876	5.82988218032337	5.96536705547823	5.69249308021208	0.385904499342485	0.22506701469735	0.619959596921757
Merged-chr19-11911258-1	chr19	11910758	11911758	+	584.0	f0_balb.idr	Intergenic	Intergenic	-1141.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	8.34148493048135	8.81094357711534	8.15290624122671	8.00559705755363	8.11331491217242	7.45883113683245	-0.804354622198203	0.00586973531146402	0.0687125683450053
Merged-chr6-146079432-4	chr6	146078959	146079959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	145337.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.3815086029411	3.21900967363445	3.38149758945056	3.21706348343157	3.42908116417259	3.10262950640275	-0.248204893250817	0.698917109778136	0.920482326683788
Merged-chr14-75060732-4	chr14	75060217	75061217	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	44690.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	4.11884538575203	3.68887122613476	4.00625613191674	4.04398208977685	3.97434337375521	4.07495391548052	0.237963702633984	0.645862563556926	0.900771562468693
Merged-chr13-54622655-3	chr13	54622116	54623116	+	646.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178397, intron 1 of 10)	intron (NM_178397, intron 1 of 10)	832.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	6.34510263876636	6.81106298486524	6.27839529205974	6.62894249487251	6.69547514760851	6.31801629580187	0.0874123744608181	0.775924701803575	0.944804182096302
Merged-chr12-33155865-2	chr12	33155365	33156365	+	699.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	8179.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.74871215656814	5.71463648845669	6.01438928856861	5.96688554507603	5.73244947219982	6.03146836033979	0.151146099788136	0.631673501440697	0.89524721007624
Merged-chr11-89006609-4	chr11	89006131	89007131	+	964.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	MLT1J|LTR|ERVL-MaLR	7228.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.55559592885851	4.49728094829654	4.77512102021254	4.53343182712445	4.33486031359159	4.16079974727753	-0.627927141970936	0.164917806850153	0.539617077326343
Merged-chr15-57889955-3	chr15	57889328	57890328	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	2590.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	4.23409793977717	3.76006102153506	4.02487457893923	4.09269806703819	4.00846672873555	3.94500772823235	-0.0116198964296255	0.982127151612591	0.995980212202506
Merged-chr8-13678473-3	chr8	13677990	13678990	+	868.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-903.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.88879745905514	3.6834934791029	3.53860947011071	3.64309039733461	3.8099888388254	3.66698843351669	-0.0170841265938476	0.975571388544382	0.994529237234851
Merged-chr1-74236460-4	chr1	74235961	74236961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029711)	promoter-TSS (NM_029711)	-56.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	8.0297721321417	8.10999491244385	8.08933995848957	8.08750295673981	8.11471036610545	7.98604613684717	-0.0136502187386413	0.94749219195874	0.988008807662239
Merged-chr5-123897499-4	chr5	123897003	123898003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9772.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	7.73669578648779	7.75095191064364	7.17880041480122	7.46806057449417	7.86856150044735	7.23651428698926	-0.0414472229087023	0.888209568486637	0.97401529899353
Merged-chr17-34837683-4	chr17	34837162	34838162	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019442)	promoter-TSS (NM_019442)	643.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	7.44097554167522	7.55141523722439	7.11404166851793	7.58964037021354	8.10615600056695	7.47249529142394	0.543694409474453	0.0554375089919941	0.302796955835999
Merged-chr9-89261953-4	chr9	89261448	89262448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	50564.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.93064153456576	5.81474881737456	5.86913763681432	5.68723130216979	5.80681853715967	5.97675498191696	-0.0885041537536332	0.772030231333974	0.943680976839558
Merged-chr9-14273108-3	chr9	14272604	14273604	+	755.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-3197.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	3.65058394337852	3.73215179471891	3.56708871574505	3.74384928672055	3.91949733872179	3.85139562060036	0.611257962241348	0.255030881908201	0.652024436103169
Merged-chr11-83687304-4	chr11	83686801	83687801	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16755.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	5.10361423399186	5.21689340317786	5.49945507078331	5.61612287322487	5.60501051529601	5.76864237400228	0.750189766943688	0.0284013752900296	0.201822609202602
Merged-chr11-106414360-3	chr11	106413870	106414870	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023913, exon 11 of 22)	exon (NM_023913, exon 11 of 22)	-31589.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	4.0855880433204	4.23038937295734	4.5597010373741	4.11568899524239	3.93606782633353	3.92859905738138	-0.85075879124201	0.0907875851037995	0.400963280766929
Merged-chr4-47261321-4	chr4	47260805	47261805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	53293.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.35867131823449	5.25557946332745	5.28172909542455	4.89643101610878	4.89522141812208	5.01392780788274	-0.774531228610761	0.0312586419323587	0.214053911440022
Merged-chr10-82862470-2	chr10	82861970	82862970	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	2129.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	3.41614765502207	3.51484570554035	3.81589101858408	4.09855042207294	3.85807602217821	3.62076300863441	0.970136922328567	0.0940845709256412	0.408560072801142
Merged-chr5-136908612-4	chr5	136908110	136909110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026073, intron 1 of 4)	intron (NM_026073, intron 1 of 4)	460.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	7.0390354208185	7.17973245957169	6.52832448460687	7.00314713730328	7.36589509597668	7.03906987001797	0.295705015603161	0.315468707007284	0.709830183143918
Merged-chr19-40706775-2	chr19	40706275	40707275	+	627.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	47005.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.20450541559499	5.67834937244857	6.03920575695611	5.50597582590103	5.4490819351498	5.8191769448483	-0.151469602224352	0.695369080306321	0.919289041383579
Merged-chr11-50027643-2	chr11	50027143	50028143	+	767.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	2312.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	4.24907313108229	4.18946114455371	4.29428985089425	4.62195884794671	4.38027936535258	4.27020991094324	0.510200010816643	0.261235343423692	0.65883279652043
Merged-chr3-121844795-3	chr3	121844287	121845287	+	793.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29485.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	3.00372635871487	3.08261988175996	3.06542909934743	3.17442854311681	3.33336580478778	3.41525613603291	1.12546234070478	0.0809463511335474	0.376488763841264
Merged-chr6-55057050-1	chr6	55056550	55057550	+	589.0	f0_c57.idr	intron (NM_180678, intron 7 of 16)	MTC|LTR|ERVL-MaLR	19049.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	3.3213657089255	3.27403859233718	3.3351356257868	4.01552564778712	4.31694788005434	3.97401826235508	2.93699371509556	1.78643916963643e-06	8.99250032831868e-05
Merged-chr15-89210251-3	chr15	89209738	89210738	+	971.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	6.46376207259422	6.45562209141643	6.50473529333918	6.72135761423074	7.05576292725589	6.89669747873037	0.677816780814988	0.00964665024099186	0.0980430527974167
Merged-chr15-95804391-4	chr15	95803880	95804880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	13537.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	8.66877142343862	8.82087938947723	8.37048903652471	8.40183168913722	8.62718364473274	7.89208501504405	-0.395818309538574	0.147227796880345	0.51210310688152
Merged-chr15-86250468-3	chr15	86249973	86250973	+	909.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-27202.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	2.69031472599115	2.55081383472375	2.62195202509348	2.75260567498488	2.44529389588977	2.81918333274848	0.30507197063748	0.697624578906642	1
Merged-chr9-57130639-4	chr9	57130040	57131040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028636)	promoter-TSS (NM_028636)	-237.0	NM_028636	73744.0	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	7.29306978702787	7.936678697201	7.63204078501808	7.38264052533797	7.46649110736687	7.77507587099632	-0.1487348860857	0.591506813179042	0.877670687791177
Merged-chr7-122067815-2	chr7	122067315	122068315	+	953.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026140)	promoter-TSS (NM_026140)	617.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	7.24721077568495	7.52278486354337	7.34663558393791	7.14090382260545	7.3632135835471	7.25672988063387	-0.177415441107503	0.462010615221123	0.815107818354545
Merged-chr15-102461277-4	chr15	102460860	102461860	+	848.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2190.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	4.61553751658988	4.59169424007769	4.82717694621058	4.66837620596314	4.62376315816278	4.35850487598911	-0.261247931038044	0.540810043966809	0.856546234535532
Merged-chr15-102327223-2	chr15	102326723	102327723	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027044, intron 3 of 5)	intron (NM_027044, intron 3 of 5)	1107.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	3.80399925286505	4.15531300629544	4.48687671415957	3.77119440943501	3.93573536033582	4.32157240824152	-0.419363614654026	0.454128261605281	0.810100393169515
Merged-chr1-34855850-4	chr1	34855345	34856345	+	959.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	5856.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	6.79177802464761	6.91832334928267	6.93388389563118	7.39695567493107	7.70855872225145	7.00662600035289	0.801074694302548	0.00411645356713705	0.0530712532405236
Merged-chr7-80180656-4	chr7	80180149	80181149	+	934.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6192.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.97729182685221	4.63817114249	5.09603845251334	6.01117062247025	6.37209050738067	5.72756597059554	2.24874785771713	2.70521042129786e-09	2.768698016425e-07
Merged-chr2-166155611-4	chr2	166155098	166156098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028072)	promoter-TSS (NM_028072)	85.0	NM_001252579	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.53350237860823	4.2075908737333	4.09249235145739	4.12497220891364	3.89619619029148	3.78764874448471	-1.00074516951754	0.0533885404686201	0.296216154918513
Merged-chr17-71002240-1	chr17	71001740	71002740	+	1000.0	f0_c57.idr	5' UTR (NM_026064, exon 1 of 4)	5' UTR (NM_026064, exon 1 of 4)	293.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	8.31209054833303	8.37155040338745	8.39400006507452	8.44164617716967	8.2848818473511	8.18389058071165	-0.06778938907935	0.745137858191091	0.936032341688524
Merged-chr14-16457308-3	chr14	16456798	16457798	+	952.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	92092.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	2.5560797968784	2.69018663484448	2.91619596012608	2.75878383377511	2.37724838679091	2.93172484479322	-0.0913152147915033	0.912914183187073	0.980493376461863
Merged-chr11-104440692-4	chr11	104440186	104441186	+	809.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1605.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	7.86836523255765	7.99430429090617	7.5846009538622	7.99863450701173	8.25907105919098	7.68053303399522	0.251444682594624	0.336416928458864	0.726422770866952
Merged-chr12-86878596-2	chr12	86878096	86879096	+	668.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6218.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	2.91873191738352	2.84034408360558	2.95606356273833	2.91159556294922	2.7298000137736	3.02818456922736	-0.0730117127669998	0.91745897680147	0.981619611552072
Merged-chr5-107962102-2	chr5	107961602	107962602	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	24975.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.08404009211003	5.17908556434743	5.52547178568438	4.99733377279725	5.00566821742816	5.48224915745927	-0.197642053945929	0.615746619404274	0.888094238397512
Merged-chr1-171388531-4	chr1	171388013	171389013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005508)	promoter-TSS (NM_001005508)	-447.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	8.07221250586257	7.93138106078163	7.28525574881136	7.77932731515937	8.21642307397577	7.78289268125502	0.189419628261815	0.521874905730121	0.847333889244301
Merged-chr5-149182914-2	chr5	149182414	149183414	+	912.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015478)	promoter-TSS (NR_015478)	-878.0	NR_015478	433966.0	Mm.207047	NR_015478	ENSMUSG00000097191	5730422E09Rik	-	RIKEN cDNA 5730422E09 gene	ncRNA	4.12746724473946	3.98224592056777	4.22861096787793	4.34282796003667	4.23833353082019	4.10973515021532	0.355888841108366	0.453043724625849	0.809584436639875
Merged-chr17-6079811-4	chr17	6079289	6080289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181392)	promoter-TSS (NM_181392)	-39.0	NM_181392	66467.0	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	7.39832356396839	7.74855715484688	7.26837246252285	7.6125713991624	7.57987256377647	7.25273719538302	0.0029494993008472	0.99104845097131	0.998137907554386
Merged-chr3-108799953-2	chr3	108799453	108800453	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 15 of 18)	intron (NM_011504, intron 15 of 18)	40549.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	3.16887637204975	3.39712708655785	3.58968150595123	3.31195724479758	3.53918522581819	3.15685067724859	-0.149024476263024	0.819517550804888	0.957283576025177
Merged-chr7-44837739-2	chr7	44837330	44838330	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 5 of 8)	intron (NM_001171024, intron 5 of 8)	1542.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	3.77879415572256	3.65912635945326	3.85242156905805	3.56117875229893	3.45865829482125	3.92056006715451	-0.374733767914034	0.509952371617931	0.840623252721494
Merged-chr2-90488429-3	chr2	90487932	90488932	+	924.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	B3|SINE|B2	-9258.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.18024095093648	7.1270346923691	7.04621928008862	7.4097919752943	7.91233526794841	7.23412976724738	0.654633928878658	0.0182275547612241	0.152124210288058
Merged-chr4-134927874-2	chr4	134927374	134928374	+	850.900024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023665)	TTS (NM_023665)	-3106.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	4.61790092482101	4.94534605400851	5.28028407204187	4.75592773726409	5.09411209697987	5.06651540730288	0.036099293129606	0.932305192997033	0.985087224393733
Merged-chr5-125352048-4	chr5	125351566	125352566	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10972.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.11579725358117	4.49443938787096	4.95369602195442	4.30537916566236	4.45997921735346	4.68004482084918	-0.175212060019172	0.727335352971981	0.930141386998351
Merged-chr14-105483145-4	chr14	105482644	105483644	+	858.4458619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15644.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	2.98649526319132	3.10315760653728	3.15049749639777	3.1977276832004	3.3775253338847	3.44348049360509	1.11168099747825	0.0829541252767259	0.381034880266398
Merged-chr3-132684051-4	chr3	132683512	132684512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163455)	promoter-TSS (NM_001163455)	-132.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	7.98050452137894	7.84402805472318	7.40405497532526	8.10835007123777	7.84181568127367	7.4498013389558	0.0876120085837223	0.758748997965499	0.940287421764314
Merged-chr4-135981115-3	chr4	135980586	135981586	+	863.4722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	6158.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	6.27976274939515	6.31741242108129	6.13512354293576	6.31259389328729	6.17920442948775	6.15192284701429	-0.0587674126681166	0.833396467552139	0.961070491919313
Merged-chr10-14210246-4	chr10	14209740	14210740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243861.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.96462508833755	2.85848954503208	3.00450231939744	3.04102591275702	2.98022470737215	2.8948017846056	0.163498016156931	0.810191605016782	0.954976703432846
Merged-chr11-22928996-4	chr11	22928437	22929437	+	947.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-43068.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	3.97468696749229	4.26902021578733	4.19408618714886	4.06887524239465	4.00376155669384	4.21695713636134	-0.167777107765079	0.730061995184245	0.930736680834301
Merged-chr4-126022644-2	chr4	126022144	126023144	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2015.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	4.99473839082643	5.41894185098418	4.9221178362824	5.81649443810338	5.90297794415739	5.57514520539475	1.20974479415565	0.00120989441219547	0.0208995005708866
Merged-chr9-110535415-3	chr9	110534972	110535972	+	763.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 1 of 20)	intron (NM_001081340, intron 1 of 20)	2875.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	3.79864198884914	3.49517134274952	3.85264922020891	3.93058563417775	3.78345187888551	3.77048588112121	0.361966229472142	0.507897316764849	0.839513705470194
Merged-chr15-81027806-4	chr15	81027273	81028273	+	882.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	50008.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	2.75084735176964	2.60778786866517	2.98804754029159	2.36420678538308	2.29587024066239	2.59168601636343	-2.37602111403932	0.00819659349004032	0.0875545348086619
Merged-chr1-152768257-4	chr1	152767747	152768747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026369, intron 1 of 3)	intron (NM_026369, intron 1 of 3)	1705.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	3.85055965218812	3.97786539012107	3.86493841938461	3.86944443747293	4.0048541343963	3.98395680696759	0.164452736247552	0.743726407975913	0.935764636709305
Merged-chr5-74820556-1	chr5	74820056	74821056	+	779.0	f0_balb.idr	Intergenic	Intergenic	-117653.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.07818184718289	2.8351572545927	2.99894639303376	2.48515265101014	2.41284700478741	2.64407501505889	-2.97370157042046	0.000919564152908804	0.0168782985186694
Merged-chr16-78200280-4	chr16	78199781	78200781	+	951.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55173.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	5.5514156596518	5.28566930876126	5.45667777166959	5.45030756880897	5.87351095073574	5.36503257991499	0.310426303473248	0.387569455769277	0.76768118438771
Merged-chr11-114913070-4	chr11	114912558	114913558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21328.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.27674566735345	5.97245575541351	5.78282606885409	5.87385989367676	5.93133234201888	5.73654929494266	-0.31641919330676	0.321782479412329	0.715218854925801
Merged-chr9-31031182-2	chr9	31030682	31031682	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	CpG	538.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	6.60810887750548	6.745456940486	6.57487508074603	6.69267167396519	6.28495871461522	6.4170826646229	-0.278789856215153	0.316718128995558	0.710742716211415
Merged-chr10-44704348-4	chr10	44703865	44704865	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-245617.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.1115428817131	5.02520674473481	5.56635883873925	5.86818402698401	5.91306605771259	5.45611724785162	1.00816198481003	0.00647078606278399	0.0738068768625264
Merged-chr3-96725587-2	chr3	96725087	96726087	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028925, intron 2 of 14)	intron (NM_028925, intron 2 of 14)	1852.0	NM_028925	74414.0	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	2.73684804638246	2.76586383963567	2.82080064754183	2.94482008482655	2.7996245854256	3.23580080727699	1.1031024509382	0.128616699203196	0.479743640706484
Merged-chr13-92484023-4	chr13	92483544	92484544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-13.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	6.40738698819845	6.55473736367068	6.11825526457118	6.73045450401164	6.97029879235844	6.24903053878351	0.503721824679573	0.11684074553069	0.456457333870963
Merged-chr13-5920573-3	chr13	5920064	5921064	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	59075.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.17310720727879	3.71278999026078	4.01732809117402	3.96488969587657	4.32133999621564	4.22578000001853	0.573180135703897	0.273623221821394	0.671005315380766
Merged-chr9-21926943-4	chr9	21926434	21927434	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	354.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	7.39814918209134	7.78799344062832	7.34508791932108	7.20338803872828	7.53590929190292	6.76631658231807	-0.45732033279383	0.130899564140371	0.483569810071875
Merged-chr11-106999059-2	chr11	106998559	106999559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010655, intron 1 of 10)	intron (NM_010655, intron 1 of 10)	466.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	6.24204970998527	6.31201859979729	6.73598381501722	6.37717785405999	6.373153036009	6.49404483332753	-0.038941542573534	0.894012022087139	0.975337673545585
Merged-chr1-166002326-1	chr1	166001826	166002826	+	951.0	f0_balb.idr	intron (NM_198932, intron 1 of 15)	CpG	308.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	6.62074850374839	6.40429579003643	6.17600590667157	6.82887966854699	6.28328734034861	6.23712926811613	0.100923765278508	0.753379371005383	0.938549578325581
Merged-chr11-5445659-4	chr11	5445131	5446131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-784.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	6.524767359038	6.63288252290336	6.88901798752264	6.6118263065563	6.94147841633437	6.86336083569283	0.208215847723862	0.445756204163446	0.805334424093105
Merged-chr4-57947765-1	chr4	57947265	57948265	+	1000.0	f0_c57.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8646.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	7.48979875397927	7.58213507998876	7.03190903039573	7.09578200295114	7.24856675364669	6.76790056674208	-0.500064053128071	0.0784031861236487	0.369765882015731
Merged-chr3-52756402-4	chr3	52755883	52756883	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	16659.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	4.11853061614566	3.95790251669998	3.8866343006085	5.30280393284224	4.89512389132987	4.70867422128616	2.5423322825532	2.95653149641232e-07	1.85385887530879e-05
Merged-chr13-9826445-3	chr13	9825923	9826923	+	809.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-61102.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	2.32955715770439	2.19255857135074	2.2434256145524	2.31660933984925	2.18857443647944	2.4478054606281	0.40577118766173	0.63592660821163	1
Merged-chr11-100471965-2	chr11	100471465	100472465	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155072, intron 1 of 2)	CpG	817.0	NR_155072	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	4.83417297225044	4.98977506310165	4.67219597176037	4.71588607626417	4.58464471535315	4.92857675448796	-0.245081898740601	0.550290772975876	0.86068786913114
Merged-chr9-44230277-1	chr9	44229777	44230777	+	1000.0	f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	3769.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.27350089299533	5.33644070690841	5.55234701780269	5.52022875636633	5.65113552255844	5.14315473828922	0.164926547594009	0.648079868793116	0.901671976480297
Merged-chr18-4337260-3	chr18	4336757	4337757	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	15696.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.11345480895959	6.29178918047768	6.41307572870673	6.43243607393776	6.43877920972637	6.28111991329296	0.197391911375659	0.479323412074137	0.824178515809639
Merged-chr4-41275048-1	chr4	41274548	41275548	+	1000.0	f0_balb.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	87.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	7.55917798942339	7.81001280770924	7.4756993514281	7.79975038127566	7.76645857984263	7.19185611985353	-0.00400859221416744	0.988258291317833	0.997319602968688
Merged-chr12-76318567-2	chr12	76318067	76319067	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 27 of 27)	intron (NM_138745, intron 27 of 27)	-6324.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	5.60584468417617	5.90886879470526	5.96074508978739	5.99926956506801	6.16163412181398	6.02169795954271	0.417698790241324	0.174613130827742	0.553894605234828
Merged-chr19-56703241-4	chr19	56702736	56703736	+	977.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.97519625337188	6.88352470951548	6.45082692937981	6.53499006016309	6.66018944162727	6.06983586193478	-0.535521706548929	0.089813802105215	0.398318277586379
Merged-chr2-94431001-2	chr2	94430501	94431501	+	824.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	7185.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	2.96403232146306	3.23303810114102	2.88574692879386	3.06690674097419	2.83667483410061	3.25553650714402	0.0835459206829332	0.907295547591725	0.978875083701163
Merged-chr19-40721722-2	chr19	40721222	40722222	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	61952.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.67809615597178	3.12234836257793	3.22205929504587	2.91327882435617	2.97627829197637	3.18445765886531	0.000858497921733384	0.999083204088777	0.999864283693757
Merged-chr1-131432100-4	chr1	131431607	131432607	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95254.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.51605568087706	6.33878427385704	6.33690029747906	5.92506091206782	6.43644831855425	6.37767961085711	-0.21864980440263	0.469703024187905	0.819076394430111
Merged-chr17-73067640-4	chr17	73067143	73068143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40342.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.70828326636449	6.60656606510903	6.52816025428593	6.75660160971662	6.90970097009928	6.39699356183716	0.155939342938189	0.578306142428247	0.872413247623503
Merged-chr7-45590039-4	chr7	45589543	45590543	+	817.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009737)	TTS (NM_009737)	-14867.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	5.7599652196247	5.46580099477286	5.57762155138355	5.67184542660322	5.71164395198724	6.22916029752207	0.501020496597411	0.150749649400692	0.517751963814455
Merged-chr15-100616578-2	chr15	100616063	100617063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 1 of 3)	intron (NM_011873, intron 1 of 3)	901.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	6.12117858334939	6.12132271353221	6.0783332469452	6.27706885798278	6.24354899589542	6.36279076313998	0.306718882768976	0.266955972709498	0.664479122235541
Merged-chr19-53536310-3	chr19	53535813	53536813	+	890.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6995.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	3.31086354963314	3.19690619961754	3.37988049864996	3.02071190506767	2.88823804311262	3.11705469432542	-1.30250528516296	0.0508303593984361	0.287175664358967
Merged-chr12-100397992-4	chr12	100397450	100398450	+	727.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	intron (NM_001033213, intron 9 of 19)	121341.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	3.73307751875116	3.85955320190119	4.10520517876511	3.5926021710651	3.98811508239351	3.9453073377629	-0.139803980332831	0.799072438948524	0.952185649023727
Merged-chr3-65930807-2	chr3	65930331	65931331	+	891.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	27418.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.92139891207562	3.84666636887597	3.72715194119282	4.06867924198695	3.69398263902852	4.04970712694122	0.319494691578967	0.550001180366822	0.860509903840749
Merged-chr19-7496358-4	chr19	7495852	7496852	+	687.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146091, intron 1 of 12)	B2_Mm1a|SINE|B2	1914.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	4.66753738032562	4.42962714312601	4.31843237970523	4.73471670090193	4.10611341863597	4.83187005699017	0.25685188846544	0.605694567786488	0.883581756351046
Merged-chr2-181521754-1	chr2	181521254	181522254	+	664.0	f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	1269.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	4.6914525581087	4.90162266991975	4.98683038903015	4.78765825511335	4.80081597690423	4.76031247957514	-0.170180845776396	0.666042971632427	0.907960570164785
Merged-chr11-44380853-4	chr11	44380244	44381244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19319.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.48325727508307	4.15839877488786	4.11318228171007	4.48486264855361	4.42078365768919	4.46144816306918	0.479596819493061	0.298939107600821	0.695740805136752
Merged-chr5-43876436-3	chr5	43875935	43876935	+	889.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7626.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.42213910076721	6.0100929344068	6.63167395870714	6.52140215006534	6.46620839582938	6.45582832441156	0.182161139517088	0.546113680625316	0.85849711034619
Merged-chr11-80175549-4	chr11	80175062	80176062	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-8310.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.48547749590372	7.23347433645501	7.6368377166435	7.58251388535353	7.84969222950373	7.46042574304742	0.279680648663589	0.27029359977203	0.667262939156975
Merged-chr1-64926414-2	chr1	64925914	64926914	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	B4A|SINE|B4	30410.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	5.29247182657887	5.2681771661356	5.47444130711571	4.97474931748596	5.10679943115021	5.17801874114181	-0.519759800542544	0.144372309773409	0.507174328786026
Merged-chr13-98867438-4	chr13	98866979	98867979	+	821.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23563.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	4.13340228422861	3.86344499070674	4.02498911017138	3.88245521018411	3.81718680381818	3.94904215934426	-0.40351467412718	0.4265148171081	0.793840707522572
Merged-chr1-78484618-3	chr1	78484109	78485109	+	941.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2|LTR|ERVL-MaLR	4288.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	3.04940999669292	3.15253701891199	3.00391334958753	2.97131716383314	2.85812793274418	3.1348695351065	-0.39955832844402	0.556072705821554	0.86357390983939
Merged-chr16-90916278-4	chr16	90915749	90916749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18600.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	5.55362977744063	5.36685106330539	5.01426019052208	5.09563868556524	4.81250562796827	5.14997325095691	-0.679335562546951	0.0822120933913506	0.379123019025808
Merged-chr4-151988931-4	chr4	151988401	151989401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145929)	promoter-TSS (NM_001145929)	85.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	4.92502043415488	5.33566313692662	5.26334690696256	4.73723960613554	4.48142863408345	4.82365033972676	-1.12434472139819	0.00587729056542605	0.068781658701543
Merged-chr11-26607377-2	chr11	26606877	26607877	+	753.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13457.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	2.96860942288877	2.85909312049272	3.05525896317202	3.43482249260235	3.10413148715758	3.12915301627933	1.21850089054585	0.0727596294256373	0.354375451393454
Merged-chr8-69399499-4	chr8	69399013	69400013	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3969.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	6.54348196681017	6.83838419670593	6.55302173047818	6.07493917247872	5.93912896699597	6.08265380647387	-1.0391114378178	0.000232738347614235	0.00566082795331344
Merged-chr1-80638079-3	chr1	80637588	80638588	+	670.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	27264.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.76896658613891	5.72506345351055	6.07122988382014	5.86485839305712	6.00880519733111	6.23143670942097	0.322882555222367	0.305289183130847	0.701501724978019
Merged-chr10-70214503-4	chr10	70213934	70214934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9770.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	6.82814394407662	7.00587185659664	6.87264654228162	7.15634308286327	7.51854047652562	6.61604776753777	0.391096519222437	0.206598759741682	0.597209296528952
Merged-chr12-3808440-4	chr12	3808013	3809013	+	858.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	1353.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.8842915429128	6.34562718408891	6.46274761436331	6.38473162406715	6.59505326404107	6.25716524661163	0.295690212894806	0.345873073233368	0.734318398591603
Merged-chr18-50130601-4	chr18	50130115	50131115	+	826.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2414.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	5.15359636588252	4.8166126022211	4.92969884759935	5.3166945192009	5.61982643762385	5.51643569268119	1.04368903832307	0.00468311315548138	0.0585093812974917
Merged-chr1-54922460-2	chr1	54921960	54922960	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MIR|SINE|MIR	3927.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.34443220213888	5.55419573526712	5.6876593930215	5.15750706533179	5.00346223795849	5.54521545451552	-0.570437281147066	0.125499167074601	0.474078843870859
Merged-chr2-35183409-3	chr2	35182903	35183903	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026697, exon 7 of 8)	exon (NM_026697, exon 7 of 8)	17717.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	4.04963249867387	4.21705617222089	3.85484433705436	3.92907201768258	3.71281153649351	3.70666979585816	-0.831942470662653	0.11629380378559	0.455261106816814
Merged-chr1-120527726-4	chr1	120527212	120528212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22688.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.06079346785604	4.508790256574	4.66983340658816	5.74621380256453	5.77285996440578	5.25275144379363	1.71827665500322	3.92984327681194e-05	0.0012904277797039
Merged-chr2-36276858-6	chr2	36276392	36277392	+	757.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46466.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	3.20472577827704	2.95436390265055	3.05032231459772	3.10138809112517	3.07609621340158	3.12287162671935	0.105501223871514	0.872772173421328	0.970280669722388
Merged-chr18-23874275-4	chr18	23873787	23874787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70317.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.83694482538541	7.67532272975892	7.00434498106425	7.60230116035719	7.71888799670448	7.03292329837992	-0.100963347250101	0.755295276672914	0.939269406300643
Merged-chr6-115765309-2	chr6	115764809	115765809	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCAA)n|Simple_repeat|Simple_repeat	-2843.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	4.20107427903735	4.31033487191827	4.3890062062824	4.86643764953746	4.93974548959525	4.58985573692741	1.27730817107728	0.00302068024320783	0.0423495807374621
Merged-chr2-22811013-4	chr2	22810512	22811512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	36685.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.59784890192045	5.62645797561432	5.58178087031265	5.40216290113006	5.17261950442938	5.74647574856269	-0.299651896187529	0.39555470809451	0.77292149804213
Merged-chr8-122562297-2	chr8	122561797	122562797	+	887.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5718.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	4.26792684742833	4.36834740307207	5.14950258256626	4.51309430985182	4.40764499530154	4.8089030743608	-0.159929841474061	0.754434952359677	0.938902535386539
Merged-chr1-165770933-2	chr1	165770433	165771433	+	983.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	intron (NR_149310, intron 4 of 4)	7175.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.48087182570404	5.34006337807206	5.94338155123749	5.66296876427505	6.02719538439471	5.84363149079553	0.469947321261842	0.184219847939361	0.567869251150334
Merged-chr1-181015679-4	chr1	181015160	181016160	+	935.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1909.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	7.53177156866298	7.51303820877581	7.44024124279589	7.67954102874404	7.93978439282643	7.42137306004369	0.306039187103463	0.215708287000812	0.609112973600893
Merged-chr14-121599502-2	chr14	121599005	121600005	+	751.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347596, intron 34 of 52)	intron (NM_001347596, intron 34 of 52)	-94251.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	3.85823494759144	4.16674929618571	3.9857888076733	3.51251967959389	3.5091004520384	3.91207776443742	-1.1861136829109	0.0349055599920893	0.229127629837628
Merged-chr16-95702488-4	chr16	95701988	95702988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	81.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	9.05256039308926	9.25858935057296	8.91085031839308	8.87336167165267	9.11822088900092	8.597398763298	-0.270462390482877	0.253395611672639	0.650824765543929
Merged-chr1-184067130-4	chr1	184066626	184067626	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	32745.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.9090201346118	3.9822028436143	3.79631724409113	3.81795126433647	3.98967723995834	3.91782455080648	0.0307922997679956	0.951937559673946	0.989009982211661
Merged-chr11-107229154-3	chr11	107228641	107229641	+	966.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 7 of 9)	B4A|SINE|B4	-39760.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	2.4293223317469	2.51541062173569	2.57752313427257	2.35525079455604	2.28961122024057	2.52724990700205	-0.74415037009578	0.364316018892763	1
Merged-chr11-100826790-4	chr11	100826285	100827285	+	671.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	-4215.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	3.96940315361747	3.82858954655761	3.98181541347568	3.72563213950953	3.67836815797875	3.7549606339483	-0.678664594208856	0.193316832123551	0.58042547704774
Merged-chr1-155462704-3	chr1	155462200	155463200	+	612.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45256.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	2.76758139854748	2.69259767758816	2.85149245523822	2.71336017977721	2.66657128521914	2.54852269169028	-0.66406814572944	0.378967863117021	1
Merged-chr18-67826197-4	chr18	67825700	67826700	+	895.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	26093.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	4.93749257301369	5.02866244840585	5.32587265987942	5.80251448211618	5.91426798441072	6.32395794554431	1.75730504341161	9.91315465806389e-07	5.38416300775574e-05
Merged-chr5-102067706-2	chr5	102067206	102068206	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	2215.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.15404694248897	5.92650438449013	6.34819899274773	6.64140462643318	6.96650993613759	6.60503079257336	0.994468102854163	0.000675662739399719	0.0133285111448351
Merged-chr15-50361959-4	chr15	50361449	50362449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	527100.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.01127793491758	6.9875870998789	6.85770292382808	6.97155971472073	7.14604655063342	6.77734336259378	0.0405870581330515	0.873837949980655	0.970492962848917
Merged-chr6-83077869-1	chr6	83077369	83078369	+	591.0	f0_balb.idr	promoter-TSS (NM_197992)	promoter-TSS (NM_197992)	-521.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	5.18847065171634	5.32102199337197	5.29544906593533	4.98117938313907	4.46154776440848	5.26890694355035	-0.705855007810547	0.0988521391212887	0.419333642002316
Merged-chr5-65391484-4	chr5	65390971	65391971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011292)	promoter-TSS (NM_011292)	-26.0	NM_024471	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	8.27668253415376	8.51612669298294	8.03456720072786	8.20258943859649	8.35964450611827	8.14716425908323	-0.0768707802839203	0.743245412757277	0.93555555344166
Merged-chr9-44480316-4	chr9	44479791	44480791	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2534.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	3.59171691821612	3.79308575489837	3.58460649856397	3.5021487891128	3.58407332253345	3.65517171638253	-0.294591085278497	0.598174110776152	0.880655214435438
Merged-chr2-167958992-4	chr2	167958496	167959496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	26669.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.53170538353943	6.42161718874914	6.3736202401855	6.31805798367198	6.39750781447959	6.143109313122	-0.2414387697481	0.380899889850755	0.762863284905926
Merged-chr7-80347011-2	chr7	80346511	80347511	+	576.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026812)	TTS (NM_026812)	3874.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	3.25674032896611	3.25438814261722	3.51165579958383	3.19953858314873	3.35701854231984	3.01672536219003	-0.553697416706105	0.404108270936136	0.779358170625725
Merged-chr4-122858131-4	chr4	122857699	122858699	+	738.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001358036)	TTS (NM_001358036)	21972.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.58724985585149	3.65767540936992	4.21213038804969	3.62598161357975	3.72437452778213	3.63496317675827	-0.570375230259174	0.330942320784902	0.722226411767471
Merged-chr14-56811892-4	chr14	56811398	56812398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253753)	promoter-TSS (NM_001253753)	-91.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	7.35759224767395	7.4219945036538	6.8969545879721	7.15016158148412	7.13602190896589	7.38397314492659	-0.0499051904183738	0.851919904875531	0.96531854415899
Merged-chr2-177956923-2	chr2	177956423	177957423	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190302, intron 1 of 4)	RMER17B|LTR|ERVK	365.0	NM_001282028	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	5.26090278562768	5.5142341543813	5.48392965834645	5.54160582314879	5.27562218378961	5.23742564645429	-0.121166754854037	0.729222204640044	0.930601789377265
Merged-chr17-28705959-2	chr17	28705459	28706459	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	B3|SINE|B2	13391.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.44186587759125	4.53154190922426	4.80473893961509	4.62581082359649	4.51631748439026	4.86901084433142	0.184025737122199	0.669837598226026	0.909765063874236
Merged-chr4-155566791-2	chr4	155566291	155567291	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	intron (NM_001355599, intron 1 of 10)	2976.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.2314467992931	3.3935436252433	3.43785686639153	3.82982709119002	3.54382782438771	3.56565155374483	1.10087678850882	0.0632152296241234	0.327379898335972
Merged-chr16-87635564-4	chr16	87635056	87636056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63398.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.80695686853678	6.93521876412289	6.72976816456664	6.4285910797595	6.48312518892956	6.1434870487348	-0.729601448734252	0.00765880171844896	0.0834236907172014
Merged-chr15-94948314-2	chr15	94947814	94948814	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 5 of 7)	intron (NM_178789, intron 5 of 7)	201004.0	NR_015482	100043315.0	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	3.15858421103821	3.02119026803848	2.93388119799457	3.06836789833771	3.1509159316829	3.24499423244079	0.478471341088935	0.470571607169387	0.819523993651913
Merged-chr11-117846965-2	chr11	117846465	117847465	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2272.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	5.75820144856548	5.61515253749484	6.04157741803264	5.54883855451232	5.59467238704274	5.683319150154	-0.363737234625199	0.265907284877309	0.663723101940232
Merged-chr13-36311902-2	chr13	36311402	36312402	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	194259.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	3.07369554843437	3.50338919961083	3.44275200640722	3.08268582364692	3.11047800820081	3.18176743387374	-0.951997777960337	0.149748445995757	0.516223009447192
Merged-chr2-117080554-4	chr2	117080053	117081053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40518.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.33561338479584	4.17179515401871	3.98629074169481	4.34308932238809	3.89203127988253	4.29568282420583	0.0201803308897031	0.968368721546277	0.992776669007643
Merged-chr1-43091881-4	chr1	43091374	43092374	+	805.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	612.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	6.59281102621833	6.72711140965539	6.73681853843317	6.52821673340391	6.61539652039892	6.43907565166545	-0.237029669156977	0.362100069255403	0.747675323428227
Merged-chr18-38367425-4	chr18	38366916	38367916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28423.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.91490839884774	4.61920944349209	4.73346162294121	4.41797872629857	4.48646743638753	4.28111467077756	-0.868471477645415	0.0453886126531009	0.268957105942118
Merged-chr10-77552156-2	chr10	77551656	77552656	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	21808.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	4.53603728193964	4.42416653742067	4.62598169613798	4.27895206482666	3.94865722536199	4.27950507075949	-0.956173558048675	0.0404747136005062	0.250746637278681
Merged-chr11-120098818-4	chr11	120098318	120099318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110242)	promoter-TSS (NM_001110242)	-87.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	6.80045339596338	7.21333786610922	7.2482742569349	6.74680669427601	7.24956762577403	6.92834759844568	-0.151667930826881	0.597856725534925	0.880483945172659
Merged-chr3-142604195-2	chr3	142603695	142604695	+	806.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010259, exon 6 of 11)	exon (NM_010259, exon 6 of 11)	9348.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	3.81587693937343	4.00442385927101	3.55616493932505	3.24761427769275	3.47499242218373	3.83680822424084	-0.923909398550247	0.142374469967448	0.503728841612867
Merged-chr1-136117496-2	chr1	136116996	136117996	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	13687.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	3.23544738903458	3.57014346624008	3.61279937724231	4.02835273865113	4.3491807284556	4.09611648955492	2.29871685492787	0.000102714570335142	0.00290012689801375
Merged-chr4-139201777-5	chr4	139201284	139202284	+	833.919983	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	7673.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.39540479382005	6.43644375146186	6.32659716870355	6.95191988013564	6.80160745067437	6.86197982469667	0.761987546189954	0.00300289414433714	0.0421570467288687
Merged-chr2-157007055-4	chr2	157006564	157007564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025853)	promoter-TSS (NM_025853)	11.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	7.36429438149613	7.24718004216264	6.85803772697722	7.11069796074915	7.10269015795298	6.55436212829318	-0.337452134948075	0.25409845572643	0.651179145391095
Merged-chr17-57462209-3	chr17	57461603	57462603	+	649.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 18 of 22)	MTC|LTR|ERVL-MaLR	83211.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	3.65966533418958	3.56987222336537	3.77488693815905	3.95298295950356	3.82232564472939	4.0367536192646	0.875978777442653	0.0979688093530668	0.417291460898387
Merged-chr6-83448889-2	chr6	83448389	83449389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028382)	TTS (NR_028382)	7134.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	3.90544747329206	3.6702746018986	3.86497452635455	3.61370006145305	3.39158410110334	3.88596961448748	-0.604000023747037	0.29390864400179	0.690457148203017
Merged-chr2-91650617-2	chr2	91650117	91651117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	499.0	NR_027371	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	6.04809227570846	6.2182737180868	6.07133154530605	6.1221413937072	6.43844675228512	5.91620433329684	0.127793720028037	0.679829566275586	0.914056754309378
Merged-chr5-130254458-4	chr5	130253963	130254963	+	929.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023248, intron 1 of 4)	intron (NM_023248, intron 1 of 4)	1067.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	6.92447126887043	7.28218979017106	6.79407174519889	7.0136004017605	7.11108488393824	7.06797193690876	0.0580685186234286	0.826481839610731	0.959133903909758
Merged-chr7-4493040-4	chr7	4492564	4493564	+	964.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	8616.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	4.71743352387958	4.40750181394073	4.97737859166428	4.45894362039184	4.243626456349	4.45451389457322	-0.80858409634601	0.0770533669788553	0.365926031383987
Merged-chr1-63113089-4	chr1	63112588	63113588	+	828.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1179.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	6.87930562225168	7.3237685817326	6.84484259579522	7.04418435598589	7.04283696635059	6.88832538903686	-0.0712035714987228	0.793202461720146	0.950307988752087
Merged-chr1-132355944-4	chr1	132355424	132356424	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311108)	TTS (NM_001311108)	12024.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.02964058657325	3.6414528510058	4.35476396251892	4.08982542928377	4.22818077459764	3.97423806462278	0.205944539288646	0.708350468612171	0.923684652799343
Merged-chr11-98754890-4	chr11	98754401	98755401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	13116.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	6.75382598371074	6.70790493845669	6.7803287705859	6.89914790426997	7.02591210790828	7.07299982965801	0.394044648795832	0.107831996573166	0.43862326620598
Merged-chr4-63568124-4	chr4	63567637	63568637	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 4 of 9)	MIRb|SINE|MIR	7910.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	3.91611979434461	3.52776192469514	3.87697121299335	3.93998490023399	3.48165377554704	3.69154927910178	-0.217771073159447	0.708132820173103	0.923620645882265
Merged-chr10-24151450-4	chr10	24150933	24151933	+	973.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	2116.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.63406821235929	5.28284853435057	5.94933194205788	6.03380994258668	5.44681255194783	5.75193844233504	0.2243401925585	0.553433915141901	0.862251545920931
Merged-chr8-22808622-4	chr8	22808118	22809118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2964.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	7.71811444736813	8.02099428090052	7.46341837942874	8.02785181506455	8.23303116436278	7.82044634526919	0.400039990602197	0.12516757094447	0.473461569668643
Merged-chr9-21366508-5	chr9	21365905	21366905	+	723.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	3.05661548585635	3.0591294287534	3.07087950765247	3.10470117565922	3.04126497847667	2.89696041589067	-0.18583588958133	0.780917414324474	0.946078518476608
Merged-chr8-122906613-4	chr8	122906145	122907145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	58271.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.32803551235008	5.38036751752597	4.94157378630067	4.96841302723319	5.25624936351191	4.76090600238281	-0.441713188638939	0.276622509668174	0.674003097641857
Merged-chr10-84576503-4	chr10	84575885	84576885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	-562.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	7.50783934572687	7.8459754180884	7.41361722785452	7.86276908905219	7.96324044171807	7.41471088749853	0.241736272410568	0.369703277410266	0.754305613253213
Merged-chr11-101971005-2	chr11	101970505	101971505	+	614.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028207)	TTS (NM_028207)	-3990.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	2.85104683174987	2.74044329097688	2.93372334904034	2.58590506513998	2.44099345768893	2.83140057324489	-1.21311657423588	0.126620525415137	0.475551373448102
Merged-chr5-143518355-4	chr5	143517858	143518858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	9635.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	6.24553408389339	6.0516267208781	5.63113501626196	6.05180639234369	5.46342365481244	5.98075727171235	-0.278792707500925	0.44199317751938	0.803034375191768
Merged-chr10-44219266-4	chr10	44218761	44219761	+	825.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001582, exon 7 of 7)	non-coding (NR_001582, exon 7 of 7)	3836.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	2.81152288956323	2.70539545490072	2.89900069772378	2.71206568403329	2.70826169866938	2.7295678777719	-0.463235852050697	0.523543760065249	0.848272401665061
Merged-chr14-54739535-1	chr14	54739035	54740035	+	602.0	f0_balb.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-27361.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	2.8335194119263	2.82224636317031	3.23847279832686	2.834098146111	2.90068622418615	2.85765654893051	-0.508040846991575	0.482321470918435	0.825550117860779
Merged-chr16-91607180-4	chr16	91606661	91607661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9481.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	5.5215246662903	5.48433074724923	4.96581924749055	5.05038136190087	5.23895129193327	5.03274374410069	-0.490169722522072	0.203974806450951	0.594227844519667
Merged-chr3-41905824-4	chr3	41905336	41906336	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	163218.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	3.66405081109778	3.73027029112132	4.0020000142256	3.49139173839968	3.2289436134825	3.53543136912933	-1.3812961026818	0.0208201529958558	0.165827825258846
Merged-chr2-27748904-2	chr2	27748404	27749404	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	38321.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.24865571717112	4.28343961076464	4.67486434939898	3.93261347010744	3.98202374347321	4.44380768727478	-0.754544841739876	0.139065202478025	0.498227658462499
Merged-chr11-120573856-2	chr11	120573356	120574356	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011032)	promoter-TSS (NM_011032)	-603.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	9.02345929952768	9.14869197249663	8.73567371508454	8.66050305048417	9.07873578983854	8.56218738040617	-0.260851759771734	0.290710705863086	0.688530967042335
Merged-chr3-146592828-4	chr3	146592303	146593303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 3 of 6)	intron (NM_019957, intron 3 of 6)	-4346.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	4.76155711846094	4.18423505270817	4.54985334057524	4.40435304975909	4.06642897157168	4.4525299293318	-0.53611822431456	0.273763322250609	0.671170854101807
Merged-chr6-39377613-4	chr6	39377083	39378083	+	952.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155076)	promoter-TSS (NR_155076)	124.0	NM_001361619	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	6.0768248010979	6.09421388995579	5.91894093147737	6.22273504675955	5.8089589228637	5.598154475217	-0.219268396920769	0.506845305085355	0.838597859957521
Merged-chr5-65888339-1	chr5	65887839	65888839	+	565.0	f0_balb.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	24770.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	4.00315741320105	3.7799777239483	3.76300539596423	3.68824566526855	3.39270482018524	3.67537592065192	-0.920160157090764	0.102590095321287	0.427175688217691
Merged-chr4-55342846-3	chr4	55342386	55343386	+	605.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-7156.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.15647747193251	3.33799965877013	3.40405772742578	3.03265758749924	3.07490194645996	3.85363938103534	0.279437638444262	0.697888162688908	0.920122930091722
Merged-chr3-106552681-2	chr3	106552181	106553181	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286986, intron 2 of 8)	URR1B|DNA|hAT-Charlie	-4879.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.42668627583703	6.34613973387454	6.67879995063595	6.63743203654549	6.49756454153995	6.62648540578243	0.166276631690985	0.539995935400128	0.856245552500013
Merged-chr7-92676229-1	chr7	92675729	92676729	+	628.0	f1_balb.idr	Intergenic	Intergenic	-6317.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	4.45998338870717	4.29349386266733	4.78658805722882	3.83607390941551	3.76990273474117	3.95277398849211	-1.93420805541245	0.000161842330261474	0.00422414573914578
Merged-chr5-66063526-2	chr5	66063026	66064026	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	34653.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.66460006314748	5.69381107445086	5.33797180510251	5.84769236673009	5.88628416140862	5.75898354664178	0.450465313635676	0.164398608185219	0.538893767328858
Merged-chr5-123399130-4	chr5	123398629	123399629	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	B2_Mm2|SINE|B2	4331.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.10694398859494	5.25339211183641	5.31239191322292	5.51322172297085	5.73400278379884	5.46777349815494	0.708569489025825	0.0380895244341113	0.241568066759251
Merged-chr1-152790353-4	chr1	152789861	152790861	+	979.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9792.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	3.66963948734555	3.07023806634398	3.4038036122083	3.52068646169537	3.21647021800531	3.41980652722437	-0.0655735674070773	0.921315542607355	0.982526400261012
Merged-chr5-138280194-4	chr5	138279706	138280706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172412)	promoter-TSS (NM_172412)	-269.0	NM_172412	71951.0	Mm.77066	NM_172412	ENSMUSG00000029510	Gpc2	2410016G05Rik	glypican 2 (cerebroglycan)	protein-coding	3.67159218305471	3.53369299515095	3.73066454455157	3.32281945090233	3.34211246475373	3.32376172998176	-1.20225565258025	0.0423664409451222	0.257937134569527
Merged-chr5-139200568-4	chr5	139200093	139201093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024451)	promoter-TSS (NM_024451)	-44.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	7.25275131574605	6.99312829786625	6.91060246676373	7.03238510939532	6.6885443695713	6.80506120616269	-0.33625992062894	0.206949929214564	0.597726047765818
Merged-chr17-67473355-4	chr17	67472850	67473850	+	929.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118859.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.66461526189878	4.58559377523402	4.45164135600067	4.47825392665429	4.50082032970445	4.76005874550593	0.00222985430344143	0.995824884583061	0.998961028701257
Merged-chr9-90235516-4	chr9	90235024	90236024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.78719323422884	7.24758584241868	7.13792253392204	7.3172247586968	7.21866748601852	7.18295663775478	-0.282092464526203	0.310392805299249	0.705829393476587
Merged-chr11-120597790-7	chr11	120597271	120598271	+	832.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025389)	promoter-TSS (NM_025389)	594.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	8.01546127434658	7.28769816568494	7.03507316485675	7.61371142590587	6.83626325087141	6.94738873289992	-0.498974146517432	0.167483240772754	0.543354082120217
Merged-chr7-99974777-3	chr7	99974274	99975274	+	745.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	5684.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.62905897155794	3.58100093737559	3.59167953171973	3.44779050150457	3.18586274901862	3.50214893218044	-0.841538193304047	0.158212878149235	0.529917060944743
Merged-chr4-116684391-2	chr4	116683891	116684891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040442)	TTS (NR_040442)	-1208.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	6.21736675633222	6.37697857248296	6.43267869024169	6.1469591893288	6.6261445384355	6.19736654864937	0.0228423945214406	0.939771381476654	0.986731489878728
Merged-chr4-126104913-4	chr4	126104377	126105377	+	931.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	920.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	6.44298709474563	6.44431512230052	6.32056193013216	6.34612037256488	6.32604689807182	6.36094031630302	-0.107524969992832	0.687123713083742	0.916983035113856
Merged-chr6-17631852-2	chr6	17631352	17632352	+	764.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.24937704155218	4.43031420178962	4.79486085468377	4.58021168228148	4.1838048643409	5.08041356011414	0.370128939835599	0.472937743354344	0.82059010808183
Merged-chr6-113681531-4	chr6	113681025	113682025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-15525.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	6.58177115249876	6.82345361443193	6.53284490847973	6.53857394530311	6.67648985428363	6.30192492260055	-0.210110366765969	0.453221394265074	0.809701014116181
Merged-chr6-127149753-6	chr6	127149299	127150299	+	818.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040273, exon 1 of 3)	non-coding (NR_040273, exon 1 of 3)	173.0	NR_040273	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	4.99456596857381	4.8728914128463	4.49352359793421	4.56277222779302	4.33492767809659	4.16787108009254	-1.07312811210096	0.0199421462366447	0.161096224404197
Merged-chr6-86848647-2	chr6	86848147	86849147	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	793.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	6.03688483121291	6.38122401554984	5.91757656821679	6.11041011522795	6.17088060771333	6.02785416194355	-0.0510127643383397	0.867756073472885	0.969442397421746
Merged-chr11-73128648-4	chr11	73128146	73129146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 20 of 30)	B1F|SINE|Alu	9648.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	5.63792149016593	5.72545330162309	5.81777749424145	6.02030802317278	6.26145364174633	5.90451957824475	0.631680092389046	0.0404832507114917	0.250746637278681
Merged-chr13-75839850-4	chr13	75839354	75840354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-31.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.36127135534753	6.36629224122603	6.41823186230193	5.96402701158759	6.04334626043985	6.14601253383057	-0.556493841257945	0.0449165181453873	0.26728267480808
Merged-chr2-163703148-4	chr2	163702658	163703658	+	945.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	9121.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	3.9848627994739	3.92376016965378	3.59509298614047	3.873183490582	3.53817660258367	3.77820162928969	-0.386829815020958	0.491758528469453	0.830726385853964
Merged-chr6-17595860-3	chr6	17595353	17596353	+	841.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41157.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.73113664133958	3.96461849569698	3.71460641836627	3.7554424589	3.72526540088581	4.33150757301592	0.450262960148789	0.429672750111944	0.795845510948914
Merged-chr19-17263998-1	chr19	17263498	17264498	+	661.0	f1_c57bl6.idr	Intergenic	Intergenic	75507.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.54625931861818	3.51804947559067	3.64112559228891	3.90003935368285	3.87402733079391	4.14330999687307	1.34218882055753	0.0131441160449379	0.121650372606568
Merged-chr15-86267166-3	chr15	86266656	86267656	+	828.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 4 of 12)	MTE2b|LTR|ERVL-MaLR	-10519.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.33781677808101	3.45526476665033	3.39860812385562	3.32491044613513	3.33283296106181	3.41430243254974	-0.168635862591918	0.775858812039837	0.944804182096302
Merged-chr2-130293712-4	chr2	130293237	130294237	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2202.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	2.75424561868414	2.58205381225703	2.89560716699344	2.65068461629008	2.5068146661433	2.73137098713345	-0.644313418678114	0.402040222430082	0.77787096574423
Merged-chr17-78740515-1	chr17	78740015	78741015	+	629.5	f0_balb.idr	Intergenic	Intergenic	-3955.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	3.28267517819354	3.28656347841901	3.32211585271043	2.91198444746071	2.66552725924831	2.99079439534336	-2.21246872839158	0.0030835769906179	0.0429923381761619
Merged-chr1-64134645-4	chr1	64134163	64135163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	-13274.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.48540855153811	4.17031229943831	4.17914107524564	4.74107465688923	4.69915453104391	4.44111290692161	0.871339169854319	0.0555212691745191	0.303018087726183
Merged-chr1-54774364-4	chr1	54773857	54774857	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 4 of 27)	intron (NM_001081433, intron 4 of 27)	152030.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.38024103080312	3.4500561283754	3.24339996846561	3.18862052845898	3.17557009521845	3.07163570642374	-0.894401204379141	0.160313220184722	0.532965919658045
Merged-chr19-11820023-4	chr19	11819516	11820516	+	878.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152220)	promoter-TSS (NM_152220)	-613.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.00276062897807	4.54654821902417	4.54807438350346	5.1753068479789	5.32016123161991	5.12970419561164	1.05131842322156	0.010599945223511	0.104694083873651
Merged-chr5-120516659-4	chr5	120516166	120517166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5474.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	9.29323259834834	8.95863920099541	8.67576748370571	8.97792497534873	9.09575677115314	8.64904710643655	-0.110002367173945	0.665544050393286	0.907855843812957
Merged-chr3-109008351-4	chr3	109007850	109008850	+	800.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	19257.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	2.85181088820912	2.93556176877597	2.88422092921045	2.79990293121246	2.69761109999393	2.70817060533565	-0.81596148452092	0.257426799560568	0.654744586209255
Merged-chr4-32352127-4	chr4	32351631	32352631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-65304.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.78655034273206	5.5727344735774	5.26797938772357	4.53062744785295	4.45967432632557	4.55697566980754	-2.30979166511547	9.60481895415474e-09	8.71535196878198e-07
Merged-chr7-16842311-2	chr7	16841811	16842811	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-591.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	5.49411948992005	5.24691765040202	5.61533011350168	5.5963370242993	5.38362462393669	5.87089862284286	0.316007637131944	0.373794253065011	0.757546812967132
Merged-chr13-110394434-4	chr13	110393960	110394960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-584.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.77510438498662	7.87771149533697	7.54428670863067	7.39637349956697	7.47190350620059	7.16998251522325	-0.561901499466893	0.0203261997230478	0.163237373473155
Merged-chr12-77270898-4	chr12	77270389	77271389	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045554, intron 1 of 11)	MTD|LTR|ERVL-MaLR	32150.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	4.17871545264224	4.19258775250316	3.78787414458217	3.60812446740537	3.62988071459675	3.96158617479132	-1.06445549797241	0.0533037557256185	0.295991930878587
Merged-chr7-102384141-3	chr7	102383626	102384626	+	704.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 2 of 11)	intron (NM_009287, intron 2 of 11)	-57569.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	3.53368384797718	3.44357788809996	3.4903440122732	3.18465185761534	3.45155193546204	3.45263829045511	-0.451635901328608	0.453156922790128	0.809675535403562
Merged-chr4-72169425-3	chr4	72168975	72169975	+	895.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285530, intron 5 of 17)	intron (NM_001285530, intron 5 of 17)	31418.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	3.36666431800367	3.54592658630308	3.94402158102059	3.56096125507675	3.84246182263175	3.62246444117745	0.175761288436099	0.770265633859726	0.943392092118189
Merged-chr5-123898726-2	chr5	123898258	123899258	+	729.150024	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-8517.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.77177440246158	3.8385421892904	3.82835954467937	3.85624823660928	4.03632185764546	3.50586103804437	0.0540043938183921	0.923662856251124	0.982727549942016
Merged-chr1-154008787-4	chr1	154008294	154009294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108865.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.4402332868746	6.89359839343507	6.54847383374416	6.61168852972338	6.70936335145624	6.73927210671496	0.0596920296323802	0.830488506413677	0.960308134590845
Merged-chr6-29247298-4	chr6	29246807	29247807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25181.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	5.72623661612058	5.50529003256253	5.30259035675213	5.4025873353287	5.0176493351583	4.97144775672445	-0.755779405209162	0.0446433483252956	0.26633910225312
Merged-chr2-126397658-2	chr2	126397158	126398158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080944, exon 13 of 28)	exon (NM_001080944, exon 13 of 28)	93895.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.27048057756552	3.56831143873972	3.23877800557402	2.99863751174393	3.14623240323799	3.2530252717439	-0.989885244556917	0.132095971312932	0.486174875309909
Merged-chr10-127739560-5	chr10	127739089	127740089	+	980.18573	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198035)	promoter-TSS (NM_198035)	51.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	5.37382045532211	5.18095328594542	5.3685226834657	5.50733161398264	5.36881097434511	5.51882030431843	0.302969814904284	0.371763405840806	0.755825969975854
Merged-chr10-57799056-2	chr10	57798556	57799556	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	4512.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	4.73074181729605	4.898281938046	4.8180376798661	4.77681297145491	4.99576149121389	5.15816140407035	0.358990011927454	0.36066007543668	0.746865522434367
Merged-chr13-3893596-4	chr13	3893101	3894101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001047159)	promoter-TSS (NM_001047159)	-20.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	3.72672163518783	3.69040501077747	3.47058623325989	3.39317697681231	3.22883053184329	3.30857012220051	-1.26117116635259	0.0361924946340265	0.23401236253851
Merged-chr9-118766218-1	chr9	118765718	118766718	+	805.5	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	54526.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.15062878065601	2.17528172284833	2.25044139379109	1.92057730183953	1.80223870060713	2.13043173614552	-2.08940338420861	0.0521026612498072	1
Merged-chr8-64949464-4	chr8	64948932	64949932	+	874.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	ID_B1|SINE|B4	2247.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	3.44129528295427	3.23837683040274	3.48092553322042	3.44292908249422	3.58972684829357	3.70551708637182	0.717281134776238	0.224250399817709	0.6190426237005
Merged-chr15-89171870-4	chr15	89171374	89172374	+	874.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2077.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.37957469396185	5.30575864564383	5.53368949868682	5.75173385802138	5.20417251463161	5.39247061650517	0.124090901277168	0.732969364194585	0.931985446585439
Merged-chr13-73331063-4	chr13	73330570	73331570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053163)	promoter-TSS (NM_053163)	61.0	NM_053163	94066.0	Mm.26775	NM_053163	ENSMUSG00000021607	Mrpl36	AI646041	mitochondrial ribosomal protein L36	protein-coding	8.07573775512951	8.3101239030269	7.63124276650071	8.00101913347148	8.11513275091802	7.56519918095085	-0.172174882541868	0.542727239724181	0.857318248006765
Merged-chr12-100202505-2	chr12	100202005	100203005	+	752.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	2361.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	5.08963223760892	5.09630118144815	4.85648859939738	4.92786452253572	4.68701161304435	4.72286399328075	-0.539869478155989	0.167689821299214	0.54370629508105
Merged-chr12-3833928-3	chr12	3833396	3834396	+	854.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	26736.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.28100038078863	6.34011875576734	6.40949056467308	6.66421125060684	6.40797308243353	6.07283221219913	0.118182370047095	0.692038110423918	0.918541547639936
Merged-chr14-57611901-1	chr14	57611401	57612401	+	859.0	f0_c57.idr	intron (NM_020506, intron 9 of 22)	intron (NM_020506, intron 9 of 22)	40287.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	2.48464095096617	2.58369661203154	2.58897827758049	2.58618997819272	2.56096877582896	2.84333197501657	0.629535818716463	0.415344893509301	1
Merged-chr10-75516602-4	chr10	75516069	75517069	+	807.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	812.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	7.06935957646786	7.26605404901165	7.14640518961073	7.52974036081528	7.45917192818339	6.9280012740177	0.26568927719526	0.327256803870509	0.719396012109034
Merged-chr14-33185541-4	chr14	33185026	33186026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-460.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	8.17617730611687	8.47926943019975	8.1253584975316	8.25794109961254	8.31267371070676	7.90819151983348	-0.134579977893263	0.576298483852953	0.871585692229598
Merged-chr3-51422225-4	chr3	51421728	51422728	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053089, intron 1 of 19)	MTD|LTR|ERVL-MaLR	6212.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	4.30008525475455	4.36542392718219	4.53165201697358	4.5472654048484	4.73661772042434	4.51515376935177	0.538947902332639	0.211504266431947	0.603945120913907
Merged-chr17-33930387-2	chr17	33929887	33930887	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009059, exon 2 of 18)	exon (NM_009059, exon 2 of 18)	493.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	5.64119189066928	5.56862410879763	5.72296646996703	5.48757044897636	5.82137148789369	5.9489672208908	0.224424249432131	0.495314672064044	0.832476188564848
Merged-chr13-101765246-2	chr13	101764746	101765746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	2971.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.25716528485081	4.15473362217262	4.35592635661903	4.50410424505264	4.62508739474466	4.66796250066414	0.892372833952219	0.0409699735910513	0.252489956508796
Merged-chr11-118150277-2	chr11	118149777	118150777	+	789.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21058.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.34436847735921	4.31073942663893	4.70048637426155	3.87528148795872	3.75403572929765	4.47488093150527	-1.07213351435072	0.049464773566836	0.282799565682925
Merged-chr3-95637931-1	chr3	95637431	95638431	+	545.0	f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	12951.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	5.4797957755592	5.73414029025537	5.83515291162707	5.69756619995646	5.68787198044513	5.641725788635	-0.0125659510487891	0.968866012063147	0.99287407177386
Merged-chr13-55231959-1	chr13	55231459	55232459	+	789.0	f0_balb.idr	intron (NM_008739, intron 2 of 22)	intron (NM_008739, intron 2 of 22)	22177.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	3.77585884888952	3.96523759907465	3.76419739681156	4.04323739325455	3.85035806030367	4.21733344216548	0.588219551806397	0.260556266465547	0.658027962349749
Merged-chr4-131910770-4	chr4	131910277	131911277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102393, intron 3 of 4)	RMER15-int|LTR|ERVL	9252.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	7.87157291841225	7.87738988395107	7.58415235467387	7.3151150774607	7.54049456423479	7.08746507694945	-0.656468332337318	0.00961415469285883	0.0978681898315876
Merged-chr13-32913248-4	chr13	32912765	32913765	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15125.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	4.82725042824513	5.0547977845069	5.19310421743812	5.24317513097613	5.25462462056493	5.15925110571215	0.412175375941336	0.262752077170647	0.660745316709973
Merged-chr8-23237791-4	chr8	23237295	23238295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024240)	promoter-TSS (NM_024240)	-127.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	5.23862563233616	5.50014885183328	5.38188828375621	5.49378508224688	5.4355663494176	5.76839406720653	0.353585531161065	0.304391593160054	0.700883185755923
Merged-chr9-121718387-4	chr9	121717900	121718900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-781.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	8.65985061829252	9.11418855902478	8.47590929995705	8.54876833413102	9.1171271609377	8.43190680916601	-0.056210992827144	0.845377655582343	0.963773214686551
Merged-chr13-34257128-4	chr13	34256629	34257629	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	88053.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	5.49946444988013	5.71852892076628	5.20795013210209	5.47948344324786	5.64245691659379	5.55929683448437	0.110109006436749	0.752402582757374	0.938231908402445
Merged-chr11-97801767-4	chr11	97801254	97802254	+	872.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	2189.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	4.48775910655352	4.43566176520131	4.52573546045354	4.61949257920245	4.49888585213754	4.37526785906182	0.0628112629422175	0.883309716879655	0.973347392063704
Merged-chr7-135657116-2	chr7	135656616	135657616	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-4802.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	3.28001417440704	3.41294095951619	3.27475608087056	3.02182096372802	2.86990377389786	3.45323839091319	-0.806354896063576	0.249782082381879	0.646852801975018
Merged-chr17-52712484-1	chr17	52711984	52712984	+	764.5	f0_balb.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	109775.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	2.63593894159545	2.49531044970774	2.8740027187783	2.47900799391388	2.77725071821572	2.71012093190611	-0.0542797698760497	0.94572815718578	1
Merged-chr9-62343136-4	chr9	62342587	62343587	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	CpG	1744.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	7.92053127328745	8.10095314052807	8.09457733487533	8.05011257335888	8.23084100693268	8.12315160132223	0.139965840181125	0.513006988770062	0.842268802551568
Merged-chr7-113505260-4	chr7	113504753	113505753	+	840.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8581.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	2.21509695656678	2.31919805802181	2.49555989682081	2.26288182349248	2.0094205098073	2.38298445403421	-0.822128450318228	0.376283823914338	1
Merged-chr2-102924714-4	chr2	102924212	102925212	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23047.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.23044610097871	4.87837767889501	4.97826612857672	4.38319777242327	4.39015405456999	4.62955101840142	-1.35144428243395	0.00124435399772883	0.0213749396042569
Merged-chr4-62284098-2	chr4	62283598	62284598	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2331.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	5.6801738282571	5.92232769288893	5.83898031365789	6.6478737196314	6.35875454846984	6.55752551180526	1.18823534818217	5.40010758521923e-05	0.00168478497169449
Merged-chr9-56264463-4	chr9	56263982	56264982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-103412.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	7.77221406792697	8.25021422354728	7.77288637355711	7.77790241171052	8.24245109421247	7.63473074279784	-0.0515582408226956	0.854866938528707	0.966038421653227
Merged-chr17-86187987-4	chr17	86187481	86188481	+	928.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 1 of 14)	ORR1C2|LTR|ERVL-MaLR	20196.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	3.05556168668352	3.34719572270516	3.28437671731278	3.11910206350327	2.9255314251304	3.24475709209015	-0.596098285262578	0.372728773473884	0.756537953227832
Merged-chr8-48016671-4	chr8	48016129	48017129	+	942.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26078.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	2.54025392086758	2.37385637220746	2.60629879877729	2.27008348553273	2.14297792425552	2.15762972513216	-2.32524053707805	0.0141529792331225	1
Merged-chr14-121938866-4	chr14	121938332	121939332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-23058.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.75061192861768	6.68652182845217	5.98615730778121	6.04378880296766	6.26647541161049	5.83500108205888	-0.756538213692722	0.0281523277561765	0.200625118870841
Merged-chr9-111290032-4	chr9	111289547	111290547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18202.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	6.1548750637382	6.06138007927542	6.1179277281844	6.39767437194974	6.31191030585767	6.39895929642272	0.427523973516357	0.119119453164615	0.461438149856671
Merged-chr4-130811127-2	chr4	130810627	130811627	+	896.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	18590.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.46479408609626	5.96243298652635	6.09124331675503	6.22647844082022	6.09945921133801	6.08757679324406	0.4858019894326	0.141294371899982	0.502077389631641
Merged-chr12-52422882-1	chr12	52422382	52423382	+	575.0	f0_balb.idr	Intergenic	Intergenic	57727.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	2.60411733719033	2.67459064854112	2.68768077393187	2.56470665987604	2.5153296460479	2.44068508576686	-0.855254079376004	0.274866391694306	1
Merged-chr11-62458064-1	chr11	62457564	62458564	+	688.0	f0_c57.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-396.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	8.56452121759989	8.96287683359261	8.50474044087773	8.66150998885793	8.91600679541244	8.41174062407125	-0.0186199305045864	0.941017530331445	0.986888338850358
Merged-chr1-138253643-4	chr1	138253136	138254136	+	934.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-20102.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	4.21126852375122	4.34092669291355	4.42010809484587	4.42633735979124	4.19760785324832	4.75267931384629	0.368815523777869	0.433411097392359	0.797815674529737
Merged-chr18-20895880-2	chr18	20895382	20896382	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_177038, intron 1 of 28)	CpG	196.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	7.7070924359986	7.93581901572223	7.67494796129927	7.78489723728755	7.68680693011268	7.48594712088973	-0.171155661214134	0.463871006980195	0.816038286358001
Merged-chr2-23068134-4	chr2	23067641	23068641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-60.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	7.66626098877466	8.17008633479485	7.90152900438638	7.81042777950613	8.12793113548255	7.90256351189457	0.0366497638269535	0.883788190162226	0.973446302281334
Merged-chr6-100163310-4	chr6	100162818	100163818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124040.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.89780000193182	4.74945441652061	4.69347329391209	4.96227489802498	4.43479892215708	4.79923222633099	-0.0979862492435179	0.819092439466441	0.957209935971094
Merged-chr17-35165465-1	chr17	35164965	35165965	+	1000.0	f0_c57.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-588.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	8.40893136770241	8.40746137018774	7.95804078365205	8.0848758125516	8.5105924590108	8.03726455192698	-0.0627193787168698	0.809013901984894	0.954721853010197
Merged-chr11-8576574-2	chr11	8576070	8577070	+	771.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	87965.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.01546926794292	6.08873532824143	5.98342023801926	5.61306641303631	5.94173403379726	5.4456868423059	-0.583631277026563	0.0757072071871005	0.36229025284676
Merged-chr5-117355985-3	chr5	117355508	117356508	+	664.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1297.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	3.60598921307005	3.40448585919885	3.39418760557821	3.43667782068017	3.28547314333966	3.1043890265406	-0.739744326283762	0.243350801230399	0.640502592040103
Merged-chr16-4625829-4	chr16	4625347	4626347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-901.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	6.8569695812811	6.9463960466249	7.08069491364803	7.15582250366865	7.43490982168516	7.03352927675132	0.407428720396962	0.11232744894222	0.447656669011208
Merged-chr15-25302003-4	chr15	25301513	25302513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	111751.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.40275145047393	7.75277333405861	6.92934030619844	7.32312713108158	7.60044255174392	7.1174533035587	-0.0684186142876306	0.822972775523186	0.958203585272257
Merged-chr1-182707686-4	chr1	182707186	182708186	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	41494.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	3.5374361934386	3.71271110277365	3.57034531390879	3.97421029208801	4.00044774876727	3.69968411047885	0.96083044615662	0.0798867239660339	0.373768934454534
Merged-chr6-94505489-2	chr6	94504989	94505989	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	Lx9|LINE|L1	5175.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	3.83368956433589	4.0410750585295	4.00351878545812	3.57613597176714	3.43346391494266	3.83426737314828	-1.15911277580682	0.0376646872899285	0.239932881642962
Merged-chr8-109455323-4	chr8	109454827	109455827	+	956.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38700.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	3.25407250696321	3.0118924305972	3.21465155806378	2.95671739344608	2.75531323547119	2.87085294612419	-1.45803954881593	0.0399603712096198	0.248823061259451
Merged-chr4-141865164-1	chr4	141864664	141865664	+	1000.0	f1_balb.idr	intron (NM_025994, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	9756.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	3.16011322888662	3.24277618607408	3.27086593448761	3.24281550664264	3.14891557177216	3.22875848142003	-0.0781080654565319	0.900130588243343	0.976728292075907
Merged-chr16-4772363-2	chr16	4771863	4772863	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	15417.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	2.5747389182015	2.53822600168455	2.8338865422656	2.48744146551247	2.66802963831244	2.96205087680935	0.344362928790444	0.66545851822508	0.907852501192998
Merged-chr7-3646829-2	chr7	3646329	3647329	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	1560.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	2.6387271515913	2.97398437518552	3.06628066341954	2.96141507225264	2.98333885266167	3.13785812397086	0.580260735771318	0.427477638692883	0.794365779350231
Merged-chr11-106035788-2	chr11	106035288	106036288	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	2.79331495701624	2.59660254638565	2.46334350190229	2.66315279915094	2.82659313858732	2.86145265026955	0.834083813994067	0.29552068627628	1
Merged-chr6-88057039-3	chr6	88056544	88057544	+	943.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11774.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	2.49855406732224	2.39349622560859	2.74735930526882	2.30319295285366	2.43520279192702	2.32254058486459	-1.19218809816197	0.164504987487207	1
Merged-chr10-99166588-3	chr10	99166087	99167087	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	58452.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.29180346881635	4.37880448737674	4.24684269018045	4.23725959133014	4.34879882712005	4.48778445593564	0.122541604113905	0.785129829125531	0.947850129107983
Merged-chr7-31181392-4	chr7	31180899	31181899	+	976.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	19041.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	4.06878738043595	4.08031132709023	4.21606450000326	4.24654629826769	4.02276875536577	4.2833924922345	0.177955910988806	0.708967255872238	0.923861312746116
Merged-chr11-118400747-4	chr11	118400240	118401240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	MLTR14|LTR|ERV1	1219.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	5.54530933245584	5.39202267968844	5.81568259939016	5.70664058671836	5.43982388954992	5.65300643379892	0.027073017375932	0.936642567997107	0.986037792257163
Merged-chr9-32486746-2	chr9	32486246	32487246	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	MIRb|SINE|MIR	54706.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.98153887678976	4.01520156703742	3.97877600340723	3.96391931071494	3.79531312848683	4.35402181186387	0.160277575432023	0.759051390634321	0.940311236380535
Merged-chr11-8569869-4	chr11	8569352	8570352	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	94683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.66621125335006	3.50091777300216	3.77065312387793	3.16500706549598	3.3030584490432	3.43164636101187	-1.31461755956044	0.0314971590284702	0.214997178707215
Merged-chr16-43930296-4	chr16	43929779	43930779	+	834.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027801, intron 6 of 15)	intron (NM_027801, intron 6 of 15)	40377.0	NM_027801	212153.0	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	4.61225671506515	4.56358118877641	4.48154167081022	4.08007019435185	4.28739573007316	4.50689421992608	-0.67002267113331	0.138818118708129	0.497765344567168
Merged-chr15-98978025-3	chr15	98977536	98978536	+	789.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7929.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	5.7647595607052	5.4323261894587	5.65773131441103	5.35583650888038	5.24525855559619	5.34913683296202	-0.597481646989769	0.0785240967821836	0.3701049646002
Merged-chr14-57619660-4	chr14	57619162	57620162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020506, intron 6 of 22)	intron (NM_020506, intron 6 of 22)	45294.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	4.2102733996787	3.85831972456903	4.05944559973111	4.13932851044828	4.19730297465491	4.30979333841222	0.461776458784873	0.344831513201677	0.733368210920794
Merged-chr3-75744265-1	chr3	75743765	75744765	+	842.0	f0_balb.idr	Intergenic	Lx7|LINE|L1	-88534.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	4.82573078509914	5.0472420123331	5.16988086538925	4.76263503271911	4.85034921455881	5.17106018835104	-0.186173427636166	0.63954300845544	0.898199312621371
Merged-chr7-19094965-1	chr7	19094465	19095465	+	1000.0	f0_c57.idr	exon (NM_011383, exon 1 of 3)	exon (NM_011383, exon 1 of 3)	421.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	5.19716972766509	4.67448753784067	4.87551979215443	5.6382011172589	5.05439833823044	5.3548066094058	0.883896923320732	0.0340528222378386	0.22573815419722
Merged-chr2-52984096-2	chr2	52983596	52984596	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	126228.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	2.84066231231038	2.87485839973122	2.68546119672508	2.87369967245781	2.62807645585895	2.88550509791824	-0.0496879011042446	0.946511195938812	0.988007649185823
Merged-chr17-26639989-3	chr17	26639498	26640498	+	932.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-36398.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.71267930345682	4.80865570143726	4.78286981715746	4.39645962251278	4.17283238431472	4.69973786719615	-0.840135618497755	0.0579781013301721	0.311100231644186
Merged-chr15-38298370-2	chr15	38297870	38298870	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013692, intron 1 of 3)	intron (NM_013692, intron 1 of 3)	1530.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	6.06149364328889	6.43232824620392	6.4633862192332	6.50564783499932	6.37699103307383	6.10113167429041	0.0305441856825644	0.919533008012822	0.982034101943453
Merged-chr2-62641979-3	chr2	62641474	62642474	+	654.516663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	4281.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	4.13903570811096	4.47426485361382	4.26855295329623	4.61283472596812	4.56500040874101	4.55699514870543	0.690913432444016	0.121240859426282	0.465650022624116
Merged-chr17-65630759-4	chr17	65630243	65631243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	9013.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	6.50948741556401	6.41962429876835	6.81718437093854	6.737448056712	6.94994009580579	6.77218039512221	0.386836826781148	0.154273543521065	0.52356607428423
Merged-chr12-85602046-3	chr12	85601521	85602521	+	860.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	2003.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	6.72223651906023	6.62491505527465	6.39674529668659	6.50417609794796	6.77908623579375	6.58537756850805	0.0594568837707028	0.827982259320881	0.959601858390316
Merged-chr13-9765026-4	chr13	9764510	9765510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-54.0	NM_001347473	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	7.98188599634838	7.95194261213364	7.7978159883926	8.00729264824954	7.59286051436937	7.79485504244659	-0.155647433748777	0.508574979465448	0.839818423824339
Merged-chr2-75981829-4	chr2	75981259	75982259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030188, exon 1 of 1)	5' UTR (NM_030188, exon 1 of 1)	208.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	6.66672837889726	6.92809880925881	6.52989748114444	6.71770870957055	6.69599470257327	6.65878787755509	-0.0574670928729512	0.829724573976622	0.960134151531511
Merged-chr19-43965794-4	chr19	43965275	43966275	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030703, intron 6 of 8)	intron (NM_030703, intron 6 of 8)	20745.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	6.52226090534773	6.70029982939743	6.67456407035154	6.38499980976329	6.28473625959465	5.90519625390369	-0.672570049079526	0.0213266330550744	0.168535232395057
Merged-chr2-116890527-4	chr2	116890017	116891017	+	934.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355572, intron 10 of 10)	intron (NM_001355572, intron 10 of 10)	-9635.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.21835636560994	3.93696928544734	3.78062003657271	3.69720548673395	4.00918095010709	4.10137145902055	-0.15619150964805	0.773134708562312	0.943981747443949
Merged-chr19-6668748-4	chr19	6668225	6669225	+	956.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-125655.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	4.43102532659027	4.38081508770121	4.5636496333592	4.41902089510862	4.38830234389248	4.37922894062201	-0.150246369481204	0.728766061328412	0.930478966998914
Merged-chr1-92676447-4	chr1	92675964	92676964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27623.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	6.39979987090574	6.66646440067881	6.28309896419629	6.31124267545959	6.2475112685973	6.36307025692665	-0.270242964803872	0.338349586571854	0.728288914161912
Merged-chr5-20941402-4	chr5	20940874	20941874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	-9615.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	6.2651111266664	6.47503019026007	6.2175605279082	6.42954468998868	6.48795099632815	6.05164129297283	0.0325956909312778	0.912291209880643	0.9803366405399
Merged-chr9-65556605-2	chr9	65556105	65557105	+	850.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153119, exon 6 of 6)	exon (NM_153119, exon 6 of 6)	23482.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.71698074160595	3.47815257300974	3.97687378364852	3.89433395475746	3.56843625077986	4.21554961758462	0.561499537844792	0.344334845204524	0.732980075743821
Merged-chr5-121545444-4	chr5	121544932	121545932	+	903.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010765, exon 1 of 14)	5' UTR (NM_010765, exon 1 of 14)	460.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	7.72831319555144	7.51777279532556	7.51617576015125	7.66682034629786	7.26230997260319	7.38448813091109	-0.21220477327908	0.389581858798977	0.769244170164916
Merged-chr15-39112820-4	chr15	39112328	39113328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172402)	promoter-TSS (NM_172402)	-46.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	7.6036655804032	7.8899825332454	7.82822499233568	7.66907043182693	7.87927148157983	7.61161430300458	-0.0689013833960959	0.76818289299729	0.942831449939876
Merged-chr5-77191850-4	chr5	77191356	77192356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19349.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.46085834483736	3.73722593437209	3.94167191268442	4.53880858157269	4.20798735711132	4.33669310199798	1.949446416967	0.000334790637095209	0.00762215054118495
Merged-chr5-32852190-3	chr5	32851676	32852676	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194340, intron 1 of 10)	B1F1|SINE|Alu	2054.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	4.21573166395959	4.15588984398074	4.42915307868683	4.26732571256186	4.0772587256327	4.53414100732995	0.08033676730117	0.866829437402468	0.969114221403526
Merged-chr12-72536289-4	chr12	72535787	72536787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-70.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	5.58691173419968	5.5292362635185	5.28844400218623	5.27882926312759	5.32348003481119	5.11039613875929	-0.459735203418684	0.188015760297321	0.573416108077913
Merged-chr9-95693849-4	chr9	95693332	95694332	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	56204.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	5.02139896966112	5.20805481286336	5.45421284419657	5.30819632187884	5.46438474185425	5.51645460599893	0.402112365535295	0.260358405992844	0.6577835598224
Merged-chr9-63006255-4	chr9	63005737	63006737	+	880.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25358.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.77541005075245	4.92176888148726	5.36427346762566	4.99306374473339	5.1226665085279	5.19106669491503	0.152458812206284	0.70252023869623	0.921908665861083
Merged-chr2-91971019-4	chr2	91970491	91971491	+	821.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7428.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.81416906473664	6.66255979335097	6.6036560810439	6.69191328494996	6.7546498049723	6.72827475471111	0.0390545954624906	0.877915725820185	0.971779166354658
Merged-chr7-90019747-4	chr7	90019248	90020248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9411.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.98667390138544	6.58449378182002	6.86272951597842	6.73495117786056	6.66880000088087	6.64336373471596	-0.214223997039096	0.423081286715134	0.791825000674619
Merged-chr14-76382475-2	chr14	76381975	76382975	+	831.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-32486.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.4914112543164	4.01362571385968	3.77030896671185	3.5792289663643	3.94057833322454	3.56858278159726	-0.204674980723637	0.73303554914351	0.931985446585439
Merged-chr10-23854020-3	chr10	23853479	23854479	+	714.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011979, intron 2 of 6)	intron (NM_011979, intron 2 of 6)	2517.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	2.36858820025091	2.03329162882329	2.28291895910762	2.53537939258689	2.28334858529723	2.49057819417086	1.34266290169542	0.153905540279087	1
Merged-chr16-97954448-4	chr16	97953968	97954968	+	935.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001320385, intron 1 of 2)	intron (NM_001320385, intron 1 of 2)	8154.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	4.60680006925571	4.85649924356904	5.19699950228988	4.83491698078514	4.64385902002449	4.75649988056882	-0.346588175768464	0.412967203574369	0.784725209448945
Merged-chr11-108225440-4	chr11	108224947	108225947	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	B4|SINE|B4	118441.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.17831142502054	3.3957047934184	2.98367005819104	3.43985214052347	3.53084926521327	3.42890850863846	1.03549034724537	0.120743012361429	0.464784630485278
Merged-chr17-26706040-2	chr17	26705540	26706540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9610.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	4.32394382008327	4.30725382282575	4.36308211477233	4.10951291560266	3.98349312973187	4.0144991903638	-0.828131162932225	0.0771214930579907	0.366065327687923
Merged-chr5-43785881-1	chr5	43785381	43786381	+	592.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-3732.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.94049943587092	2.92254510610892	3.17794529832554	2.82891369822312	2.96425326869029	2.96531056838346	-0.430163046901222	0.53392355995133	0.852777001391163
Merged-chr4-139231508-2	chr4	139231008	139232008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	37397.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.8181836954428	6.91794090877875	6.44364263488819	6.68732202595735	6.76792137207531	6.38394837879226	-0.187983313023107	0.515129387113433	0.84337265078831
Merged-chr3-58693205-2	chr3	58692705	58693705	+	785.900024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009174)	promoter-TSS (NM_009174)	616.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	4.61558987568481	4.42096508539321	4.34583222234741	4.14342525552781	4.17316831871439	4.36944402849984	-0.649078161374804	0.154156293530984	0.523296217041698
Merged-chr6-82045343-3	chr6	82044844	82045844	+	973.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3716.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	5.1993486107467	5.1407105513515	4.3152498344937	3.53545480130061	3.52297102603899	3.63789713873168	-4.5300884046513	1.24367635523507e-10	1.6399971817179e-08
Merged-chr10-51493767-2	chr10	51493267	51494267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291894, intron 5 of 8)	intron (NM_001291894, intron 5 of 8)	2869.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	5.04164139258175	4.93711481183346	5.05872271043284	4.91195169838775	4.93007800317107	5.12246678704376	-0.0570409811391356	0.87833115854137	0.971848664619312
Merged-chr13-113606305-4	chr13	113605809	113606809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12255.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.86387884373937	4.61428866229714	4.73000321286477	4.77335700849735	4.51662027292241	5.00912009685083	0.0656170481993863	0.876981273684597	0.971475057279973
Merged-chr19-4943159-4	chr19	4942711	4943711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172835)	promoter-TSS (NM_172835)	-84.0	NM_001347422	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	5.65723350909509	5.76836696469101	5.75878244722413	5.27246103551507	5.01004129282647	5.11183184706855	-1.16240657742343	0.000637289126316628	0.0127255948218272
Merged-chr18-65800418-5	chr18	65799879	65800879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025468)	promoter-TSS (NM_025468)	-199.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	8.17658795987863	8.2242123980903	7.9576465159627	8.09611007726433	8.2561139414432	7.79765790782969	-0.0802986415376279	0.735861154625926	0.932936187992169
Merged-chr15-100304198-4	chr15	100303682	100304682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	-635.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	6.95568476598862	6.73567961373879	6.76149971789104	7.02593911460058	7.14978422594007	6.80453257310193	0.286414674057162	0.269182548848383	0.66629407200667
Merged-chr8-40495825-3	chr8	40495329	40496329	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011135, exon 6 of 7)	exon (NM_011135, exon 6 of 7)	14650.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	3.72180827387959	3.98112176037664	4.02287731033767	3.55215237854352	3.28579171274481	3.60004888881167	-1.52157559310432	0.0091639869091712	0.0947461509366696
Merged-chr2-78049531-4	chr2	78049056	78050056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	4.28931026319774	4.29449596320734	4.15100051859959	4.17968172940607	3.96839689275224	4.2652613835524	-0.325971167559366	0.492329769113309	0.83104217378051
Merged-chr12-111672342-4	chr12	111671843	111672843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021273)	promoter-TSS (NM_021273)	-5.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	7.04504237371127	7.12313687034895	6.93263322315413	6.94145933401109	7.01343510409023	7.20874990741418	0.0196945530403734	0.936317076870547	0.986037792257163
Merged-chr14-55142112-4	chr14	55141626	55142626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-25191.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	4.32084422751708	4.11853565097365	4.09591527452988	4.17270604573753	4.25848433976127	4.11632761317737	0.00595480460238562	0.989940048848987	0.997661590821987
Merged-chr10-12735899-4	chr10	12735415	12736415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	125820.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.79626489819318	4.64884249109156	4.4528303603318	4.82730667455905	4.80890192112538	4.77559140113896	0.358497032613254	0.381349174029967	0.763080052613635
Merged-chr11-69089927-2	chr11	69089427	69090427	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 3 of 4)	intron (NM_009497, intron 3 of 4)	1399.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	3.9697258583664	3.59221768625065	3.97966005162556	3.7146957434111	3.51650363002713	3.75812059813352	-0.640211731232679	0.254114164291645	0.651179145391095
Merged-chr14-9388942-2	chr14	9388442	9389442	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-495153.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.03293353484671	5.1096985512091	5.32639137543813	4.71544696968557	5.06982598489116	5.00880302895694	-0.446212425777284	0.249683988177407	0.64669443093649
Merged-chr14-74841903-4	chr14	74841402	74842402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	RLTR11A2|LTR|ERVK	105975.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.18035218276641	4.29906076806079	4.33039087423826	4.47630070783977	4.19282148599259	4.0665322555509	-0.0226126604291043	0.961880677591402	0.990691557558141
Merged-chr2-153200190-2	chr2	153199690	153200690	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	25251.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	5.10465088357315	5.07314454365287	4.69927121253703	4.8055170100983	4.82813231567745	4.88623790664998	-0.320816254698588	0.417359010679539	0.787970785225811
Merged-chr7-125554609-4	chr7	125554115	125555115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	2333.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	6.3039536485061	6.21600533456881	6.10651086395608	7.05260679045728	7.0683411540711	6.82112340297548	1.22820231726078	3.85565541013187e-06	0.000176469403391778
Merged-chr8-115494578-4	chr8	115494063	115495063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	212331.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.21989831830165	3.15864285217556	3.20738834066003	2.8599952002891	2.91406719464526	3.04884430016309	-1.18761674655564	0.0784479864991807	0.369913864933913
Merged-chr4-107577641-4	chr4	107577132	107578132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	105957.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	4.76778114408837	4.33924503645113	4.43870019897168	4.44361652559816	4.25211511349482	4.27956135689191	-0.525436602810651	0.252780218756251	0.65014161849805
Merged-chr5-23712423-9	chr5	23711825	23712825	+	872.6611330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015554, intron 1 of 4)	CpG	342.0	NR_038090	433855.0	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	6.10807786230449	6.36048703998853	5.49974991381128	4.4311731156603	4.00051993163014	4.68089151720908	-3.71137701780937	7.73285151320933e-15	2.07971115156732e-12
Merged-chr2-154376412-2	chr2	154375912	154376912	+	690.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009228)	TTS (NM_009228)	-3693.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	3.48632404362971	3.18701632035262	3.79828872674516	3.4187980693026	3.52888179078307	3.62518929725761	0.064206125513043	0.91826254456868	0.981747877135909
Merged-chr19-9982695-5	chr19	9982291	9983291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073181, exon 2 of 5)	non-coding (NR_073181, exon 2 of 5)	145.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	8.06127462408085	7.84007980937165	7.93911529814003	7.88943897749884	7.93169335620474	7.91025780653805	-0.0561542902198487	0.793538548925896	0.95047905539387
Merged-chr10-7057747-3	chr10	7057251	7058251	+	648.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34566.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	1.97526596990646	2.00954423747208	2.14092872769742	1.81793576607476	1.81245540005188	1.95216013609572	-1.60817130385886	0.109160230657946	1
Merged-chr3-87859980-4	chr3	87859494	87860494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033573, intron 6 of 6)	intron (NM_033573, intron 6 of 6)	13239.0	NM_021309	27371.0	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	3.49644707823122	3.43454360779769	3.53388387236599	3.44318751554046	3.49093079057573	3.49659161560709	-0.0348408946785682	0.951346767882566	0.988766557938178
Merged-chr17-32537021-2	chr17	32536521	32537521	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_024442, exon 2 of 13)	exon (NM_024442, exon 2 of 13)	464.0	NM_001356303	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	3.99070230956926	3.89229507725521	3.93674907798639	3.92457564846098	3.84343202826434	4.14503225689692	0.082867509031484	0.869731434887492	0.969901645415424
Merged-chr19-42004601-3	chr19	42004084	42005084	+	809.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	MTC|LTR|ERVL-MaLR	22821.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.64115214166726	6.66922140634895	6.89559383180547	6.58666429393792	6.79935838470633	6.97968863751741	0.094747535100032	0.724609399677904	0.929435720851808
Merged-chr13-60508464-3	chr13	60507999	60508999	+	775.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93448.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.21130295887004	4.36664539737718	4.29982403282799	5.96619611657724	5.99529544000035	5.40523562945191	3.36748731905094	1.26194093098469e-14	3.31241580395501e-12
Merged-chr15-8341137-2	chr15	8340637	8341637	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103326.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.39184981012599	5.60006600887518	5.6093123400531	5.58038077351346	5.8334615791327	5.43891147427822	0.200081579295258	0.554008037986175	0.862575362378324
Merged-chr12-99576109-4	chr12	99575622	99576622	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	12281.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	5.58526085642405	5.9188259338836	5.49036573482866	5.83657800363971	5.75426562064693	5.85457641857799	0.221902452895459	0.497866606999766	0.833817084327451
Merged-chr4-141143865-2	chr4	141143365	141144365	+	883.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4057.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	3.34479185828582	2.97165421658687	3.36547079819256	3.00884617553923	3.22666029772233	3.27336305857867	-0.260336875614673	0.699154596106242	0.920515737149593
Merged-chr9-57520436-2	chr9	57519936	57520936	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-796.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	4.94034529721516	5.35506322454475	5.42579009804	5.05586479419395	5.5652636830848	5.31022639845878	0.164799476985983	0.674313066544031	0.911841916826811
Merged-chr11-100360411-4	chr11	100359914	100360914	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4273.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	2.76505103798466	2.5213863344406	2.76532762756413	2.694821606796	2.74312963821623	2.95574418911924	0.588317638650005	0.435809919610521	0.799370838506028
Merged-chr8-27043465-4	chr8	27042989	27043989	+	954.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039077, intron 1 of 4)	intron (NM_001039077, intron 1 of 4)	934.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	7.35362978440591	7.50257492571364	6.46243943220038	6.97366891029205	6.94785866481178	6.25633059878207	-0.633148426195605	0.285144538424976	0.682732123424994
Merged-chr15-80257110-2	chr15	80256610	80257610	+	863.0833130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001287180, exon 4 of 4)	exon (NM_001287180, exon 4 of 4)	1926.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	5.87158508551322	5.72762343052883	5.74473091503481	5.80715336098269	5.8390024159234	6.1076239994893	0.233190786392119	0.450872350069499	0.808660498449828
Merged-chr19-21913203-4	chr19	21912727	21913727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134887.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.96435731247323	7.01515266018356	6.85060685485285	7.25292823850298	7.34827476427131	7.16887085635016	0.472788047572814	0.0480941794740989	0.278058677437522
Merged-chr9-96396312-2	chr9	96395812	96396812	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31881.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.37048160742343	4.72384307120019	5.45157847504994	5.81543861851247	5.26706424868287	5.30331441434362	0.530842778808088	0.212502009356771	0.605065703339315
Merged-chr16-55933899-3	chr16	55933421	55934421	+	862.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159366, intron 1 of 4)	CpG	927.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	4.97527549551188	4.92993795930598	4.61401711385952	5.04280294789178	4.9644042627103	4.88799755925806	0.235677637573879	0.55007237135735	0.860588923115584
Merged-chr4-105169136-3	chr4	105168644	105169644	+	902.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	11797.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.51567850161917	4.25672421018387	4.36814323669024	4.49980063184681	4.32902486330759	4.30011924797133	-0.0131211750174668	0.976673898564741	0.994723308989508
Merged-chr1-180726895-2	chr1	180726395	180727395	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133225, intron 1 of 7)	intron (NM_133225, intron 1 of 7)	852.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.06375720990393	6.21525176245837	6.4025979137136	6.56843654206258	6.2001954753584	6.36980839051118	0.262370288272277	0.372254020350469	0.756102927435478
Merged-chr13-60491828-1	chr13	60491328	60492328	+	562.0	f0_c57.idr	Intergenic	Intergenic	-110119.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.69137516676965	3.87958568322884	4.05697299166427	4.97884715664339	5.25156032497318	4.91549305496939	3.22517576474269	1.02184211624719e-10	1.36696846959318e-08
Merged-chr14-40947853-6	chr14	40947326	40948326	+	848.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	383.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.20406824808955	5.45257943312757	5.46484457449407	5.46359866525849	5.12143784218989	5.07891644877677	-0.28033004773891	0.443006601547843	0.80353074331471
Merged-chr7-99134968-1	chr7	99134468	99135468	+	557.0	f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	B1_Mus1|SINE|Alu	6176.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.29338139580187	5.84646600553166	6.23054794075655	5.8572506384158	6.09090979707762	6.40135207568438	-0.0111152094961079	0.972956237980724	0.993907514055787
Merged-chr19-4942494-2	chr19	4941994	4942994	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347422, intron 1 of 5)	intron (NM_001347422, intron 1 of 5)	598.0	NM_172835	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	4.84541393456001	4.77869382394031	4.35530332827116	4.38899577112066	4.12207541532608	4.06964227550716	-1.23530666391967	0.00947868982702449	0.0968335551311914
Merged-chr6-46143342-3	chr6	46142847	46143847	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 8 of 23)	intron (NM_001004357, intron 8 of 23)	1083286.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.21392503322717	3.15648404300667	3.57322890952239	2.95936916943443	2.94913365718627	3.39470917103143	-0.880770027785035	0.207220666982191	0.597987987274834
Merged-chr11-63047264-3	chr11	63046792	63047792	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14367.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	8.18520024119504	8.36191579078385	7.97141834149325	8.22248379044839	8.46379918371174	7.86332716487052	0.0389287169627856	0.879716889555494	0.972203905732983
Merged-chr10-115249873-2	chr10	115249330	115250330	+	994.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	1663.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	4.17384527655617	3.79641613871426	3.82941405115234	3.95416667536255	3.98649802307512	3.95160758446878	0.0437799815546399	0.932799237548873	0.98531684549485
Merged-chr14-31189542-4	chr14	31189017	31190017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17309.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	8.00570104991016	8.12322837267094	8.00601338565915	7.8637752527634	7.99285556274011	7.74710868976896	-0.241767217376362	0.266150725051515	0.663924617162923
Merged-chr5-114690344-4	chr5	114689836	114690836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	599.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	7.84239839320618	7.79101939979973	8.0630438028472	8.0217826618921	7.96726302914439	7.82405986940265	0.0634639224265829	0.775776348826491	0.9447881648961
Merged-chr5-100632947-4	chr5	100632445	100633445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41311.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	4.26098340697583	4.02495348433655	4.36490858636524	4.27615910373506	4.11421784975406	4.43124895666726	0.146579772035623	0.75871034567717	0.940287421764314
Merged-chr6-136551117-3	chr6	136550617	136551617	+	905.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	32266.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.69615093774062	4.8195406709592	4.77043587753078	4.5479994315024	4.41839897230041	4.90663152941242	-0.322623615707992	0.448968336190857	0.807473410089027
Merged-chr9-22476602-2	chr9	22476102	22477102	+	659.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_178415, exon 2 of 23)	5' UTR (NM_178415, exon 2 of 23)	887.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	4.74211888405929	5.17351950895303	4.54360501889547	4.52274664629431	4.58633357367786	4.32919792453401	-0.862201849480474	0.0590809866593907	0.314644824497861
Merged-chr2-148875594-4	chr2	148875088	148876088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-76.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	5.85829611598775	5.85801644736216	6.35233966513511	6.10272093154219	5.96182374464472	6.01323339520511	-0.00763110914217343	0.980867508065577	0.995623353730457
Merged-chr11-76780327-4	chr11	76779839	76780839	+	905.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-16761.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	6.99915221383309	7.05990995037225	6.73670652395956	7.11497138037664	7.4810321706323	6.92138588883916	0.391444201275357	0.160549199909867	0.533208683746259
Merged-chr13-49250647-2	chr13	49250147	49251147	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1941.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	2.78645396443311	2.6149968961689	2.9061672607935	2.76366387002787	2.73928423629281	2.79990279480741	-0.016860497399873	0.981605307479684	0.995738164564955
Merged-chr7-43346361-7	chr7	43345852	43346852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-4989.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	5.44329856098414	5.34247829353269	5.40213511716826	5.63423812277554	5.56250686306047	5.66321816918927	0.420922229779864	0.19344314616041	0.58058062709982
Merged-chr12-102442822-4	chr12	102442305	102443305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-2992.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.40203857765653	6.97400818092844	7.17439639111153	7.43258566710389	7.68281079521567	7.20722770587734	0.396223818197799	0.140448626117162	0.500760820920022
Merged-chr17-34143662-4	chr17	34143142	34144142	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1774.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	5.79536520717518	5.24475517095756	5.7210398033509	5.70445266389801	5.68581510903955	6.01436206639529	0.359747110788393	0.310362111543989	0.705829393476587
Merged-chr16-92826898-3	chr16	92826407	92827407	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-833.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.16633712984495	7.24286898003509	7.12299001311184	6.78206502532221	6.7506706975848	6.53148172892976	-0.736298753395491	0.00314826296070747	0.0437038145536448
Merged-chr6-97479036-4	chr6	97478564	97479564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	8756.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.23888520109924	7.89643056950931	7.76383153037865	8.17498340209358	8.10132483623228	7.59036150633502	0.00106194473425949	0.996869597666814	0.999244091538617
Merged-chr12-112632043-2	chr12	112631543	112632543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11996.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	6.56753769782851	6.56023657171171	6.80013868490195	6.8690628466774	6.71300911700748	6.65679318222283	0.177125886376606	0.498014067511629	0.833856267944725
Merged-chr15-25355523-4	chr15	25355028	25356028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58236.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.19926717764791	6.80538409091674	6.66264549999967	6.7506726981139	7.00036957212326	6.48519329974635	-0.221157985051327	0.461245289364479	0.814992635038861
Merged-chr10-75836624-2	chr10	75836124	75837124	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1743.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	7.6771251700605	7.9723033782614	7.43371544931783	7.73375828765503	7.97707118407839	7.37729971132245	0.0116503910883278	0.966612035005931	0.992349609766636
Merged-chr2-52967122-4	chr2	52966621	52967621	+	983.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	109253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.51029208624634	6.25910506239583	6.06301188895451	6.17516060103506	6.03918939899411	5.95647037308124	-0.399291432789592	0.184023257076332	0.56763314534001
Merged-chr4-139208439-4	chr4	139207950	139208950	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14339.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.08965055297136	6.89869645122808	6.90447743536398	7.51221401603428	7.7603976133082	7.31529067560629	0.86498372134298	0.000656725167339933	0.0130292769966669
Merged-chr19-29048582-2	chr19	29048082	29049082	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-680.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	4.26109908631206	4.4822196913202	4.50233425836781	4.48211911081864	4.27120678420436	4.35620625811939	-0.119988401470912	0.78832436418484	0.948908830222811
Merged-chr11-77785882-4	chr11	77785367	77786367	+	986.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8632.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	7.94019983676796	8.08935366256751	7.76575676069114	7.06811779256878	7.02464170241065	6.80531812986706	-1.4167103556496	5.64545923205756e-09	5.43689087709543e-07
Merged-chr10-91191506-3	chr10	91191004	91192004	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19885.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	3.36450803131065	3.33315875755069	3.34107663873504	3.47527897986349	3.56361586477447	3.17086163370728	0.292522153682452	0.637771181751629	0.8973803061326
Merged-chr17-45691714-4	chr17	45691205	45692205	+	650.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026732, intron 1 of 2)	intron (NM_026732, intron 1 of 2)	5356.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	3.22604496077648	2.9112362988863	2.87847765513848	3.31305839964461	3.14122778071167	3.20306750340579	0.866437064333151	0.211294472591729	0.603818490620959
Merged-chr6-70849747-1	chr6	70849247	70850247	+	742.0	f0_balb.idr	intron (NM_001313918, intron 1 of 2)	intron (NM_001313918, intron 1 of 2)	5232.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	4.22869374735742	4.26270138757022	4.26679925994156	4.23420250305507	4.22469899971573	4.14916260378059	-0.126414362202145	0.781750946960798	0.946284883776141
Merged-chr6-85590278-2	chr6	85589778	85590778	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	2747.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	2.97488373728333	2.97187762076343	3.40642241845683	3.34731308459733	3.66141043536072	3.13061455966426	1.1165910679428	0.112591610136274	0.448319026473614
Merged-chr18-80041826-4	chr18	80041317	80042317	+	939.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5078.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	2.70911038850544	2.94012209313652	3.08105262415875	2.91344798073184	2.62915498395888	2.80010151532767	-0.657637281452208	0.379023034732322	0.761579017024633
Merged-chr10-118086087-4	chr10	118085645	118086645	+	916.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-55642.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.28373205438374	8.47090162794571	8.20873914680476	8.0933137651786	8.30787662340491	7.86304296120197	-0.308645523111761	0.188675968137457	0.574222837446979
Merged-chr15-73162140-4	chr15	73161642	73162642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	22805.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	4.1950920318498	4.0529207119898	3.78732668871809	4.17319647119906	4.02834166512828	4.019085839731	0.126456679622863	0.803513612118545	0.953504424667369
Merged-chr19-32832334-3	chr19	32831851	32832851	+	663.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74774.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.18255277504427	3.20274462491661	3.14385424475682	3.17526133909127	2.90344289801999	3.15773738515205	-0.434679878289801	0.510170730708689	0.840732911368308
Merged-chr5-3301314-4	chr5	3300811	3301811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42582.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.21502127041965	5.28389463567852	5.10556605402483	4.57626995917991	4.31541846279435	4.31220153083273	-1.85501995206994	7.90406442345375e-06	0.000326069108848161
Merged-chr6-71537469-4	chr6	71536956	71537956	+	985.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-6396.0	NM_001361405	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	3.3375363992781	3.39467555157611	3.72008655828576	3.30110240465572	3.39196982162387	3.64379815019063	-0.144997573956403	0.812462665003447	0.955587126909998
Merged-chr1-127978237-4	chr1	127977736	127978736	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	109463.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	4.06016200510267	3.98323111001193	4.10905889347629	4.03140973655925	4.02391487241208	4.17662520077509	0.07453444342008	0.876970988598992	0.971475057279973
Merged-chr6-87730829-4	chr6	87730363	87731363	+	888.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159697)	promoter-TSS (NM_001159697)	-6.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.68156915196809	4.25383300835752	4.04203003029455	3.86528631843151	3.63666622854314	3.73011539264482	-1.84889283000563	0.000738799304608287	0.0142531909431594
Merged-chr19-32949517-4	chr19	32949049	32950049	+	714.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	191972.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.63015628278921	4.6991542480416	4.62636764382849	4.73945213590208	4.81887577917778	5.18199902846022	0.599220857264483	0.144493436013772	0.507214386763159
Merged-chr2-127335418-4	chr2	127334882	127335882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-777.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	7.35239114985359	7.18027497031205	6.89090147888728	7.12924561729172	7.50054126814221	7.19521703694911	0.191817036904515	0.4754014912362	0.821929811663097
Merged-chr11-106723043-2	chr11	106722532	106723532	+	582.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-7751.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.23831283762544	4.06981337699921	4.23297162267822	4.24433048250426	4.16675656226704	4.50884148904357	0.340188712831487	0.46965234508489	0.819030003012138
Merged-chr14-101515654-3	chr14	101515146	101516146	+	743.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	93545.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.94002380703925	3.48265300118256	3.42726237766231	3.26480017800706	3.23842601754694	3.12902996928081	-1.65714643372659	0.0118074618148713	0.112883117835339
Merged-chr1-132311671-4	chr1	132311163	132312163	+	893.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4462.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.61278768408332	4.69779102207806	4.69815277844195	4.53701741001951	4.07250216788964	4.83553088966162	-0.391660308657062	0.412493245039019	0.784519724187582
Merged-chr19-32224918-4	chr19	32224422	32225422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	Lx9|LINE|L1	-13909.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.46762830849511	7.97710673140727	7.26105106168852	6.72892018660684	7.15220321464794	7.14728770604996	-0.871069083466107	0.00354773097744967	0.0476435763672745
Merged-chr8-128658260-2	chr8	128657760	128658760	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-27394.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.19481613172946	3.31773476202769	3.48962581422418	3.42699571985633	3.14340474899713	3.55942638296038	0.179464027385145	0.776489331453757	0.944854920103599
Merged-chr5-125183763-3	chr5	125183252	125184252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4538.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.40713266760798	3.81176036699967	3.37899327604361	3.01780775434635	2.91218789250586	3.15539101389219	-2.33811838187082	0.000876503109659471	0.0162722156957932
Merged-chr11-3922202-2	chr11	3921702	3922702	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130458, intron 7 of 9)	intron (NM_001130458, intron 7 of 9)	-7538.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	3.2046324750149	3.11869850822723	3.71508905959792	3.13426488193708	3.20446491837277	3.9142638279171	0.335483685561051	0.643106671040302	0.899642236746548
Merged-chr14-79519188-3	chr14	79518735	79519735	+	852.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	3561.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	7.58129856615179	7.81516568253796	7.61309072183724	7.77410506068245	8.09734363988966	7.77852308339298	0.318735073489386	0.178630816664459	0.559936447278822
Merged-chr2-154942223-2	chr2	154941723	154942723	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49317.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	2.76751475877929	2.72094293882958	2.60881908474888	2.66814272916782	2.666410539817	2.80744629441231	0.0433676313497421	0.953390876023524	1
Merged-chr16-94328200-5	chr16	94327693	94328693	+	874.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133229)	promoter-TSS (NM_133229)	-229.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	6.12439546058812	6.14436623898122	5.72345331948501	5.85971837015589	5.89650980725475	5.417308781293	-0.467835251014347	0.170520164078711	0.547887470079984
Merged-chr7-127104726-4	chr7	127104219	127105219	+	856.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13283.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	2.86277032115136	2.91021780437641	2.74454268326791	3.03599412291065	3.01971869695191	3.12597299800732	1.01686446175012	0.145897130014945	0.509305604727451
Merged-chr10-94919521-5	chr10	94919079	94920079	+	907.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24999.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	6.42618601153962	6.15397735957199	5.86198675618823	5.77791925788187	5.74190218441938	5.65082489330963	-0.788484917061154	0.014180390046603	0.127953637142414
Merged-chr18-14783151-4	chr18	14782644	14783644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100449)	promoter-TSS (NM_001100449)	-101.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	7.37467801876725	7.74368450662063	7.43434385373485	7.4869599610603	7.36106756166947	6.92185576174881	-0.35887935885006	0.189431323361435	0.575270962951931
Merged-chr6-99027055-6	chr6	99026658	99027658	+	723.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1140.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.60619423129329	4.22059233353991	4.44878634077214	4.81421305235432	4.49045580088202	4.42801903452421	0.385794061314173	0.396947638220464	0.773848546396843
Merged-chr12-82151192-4	chr12	82150690	82151690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18826.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.37918727402011	4.19598233980002	4.16107430953476	4.20167263490491	4.48282014849875	4.23031499518397	0.179504118148727	0.701427879207149	0.921305535334185
Merged-chr2-11513257-4	chr2	11512772	11513772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-11182.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.96535418513768	7.25737575230734	7.03785520140902	6.85150475755694	6.91094375418383	6.77989225424632	-0.372653335119323	0.138167266652019	0.496893370946155
Merged-chr5-17857463-4	chr5	17856978	17857978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-7686.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	5.69941157309437	5.82811372366798	5.5688918650955	5.24112841659844	5.44144010806426	5.51749881617759	-0.580449067936003	0.080722348350984	0.375953974313704
Merged-chr1-20951541-4	chr1	20951006	20952006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027974)	promoter-TSS (NM_027974)	-120.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	3.516973760728	3.58363923476351	3.39372834841128	2.87836652538579	2.97437727562508	3.0519301639096	-2.46084019089309	0.000501557651232525	0.0105201938602863
Merged-chr9-25519401-4	chr9	25518898	25519898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	37801.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.06758043981937	5.55313154186415	5.59218862297351	6.27515257565257	6.26465783814332	5.56347549435746	0.555422013784881	0.138151377901083	0.496860930453499
Merged-chr7-4724537-4	chr7	4724038	4725038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142792, intron 1 of 5)	intron (NM_001142792, intron 1 of 5)	544.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	6.6327674224679	6.69363214957609	6.65574118174183	6.7635965190675	6.89680714182396	7.15491200803918	0.436581468782904	0.0943918312705886	0.409497158308818
Merged-chr1-128244166-4	chr1	128243598	128244598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026390)	promoter-TSS (NM_026390)	-39.0	NM_026390	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	8.17173390475163	8.58409797001662	8.13293111088353	8.00697691211781	8.35751625948437	8.02275126115126	-0.242786408622209	0.331965175209745	0.723284088925227
Merged-chr12-85270432-4	chr12	85269941	85270941	+	920.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304475, intron 1 of 11)	CpG	150.0	NM_001304475	217716.0	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	5.98855855432054	6.1316257059317	5.49663137986521	5.85441254472822	5.57594306682607	5.43326916304229	-0.502722865333138	0.160767472132882	0.533494234902646
Merged-chr12-76943748-4	chr12	76943293	76944293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	18455.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	7.26198704773213	7.51588890005536	7.10664450163196	7.37398074800492	7.42067840889888	6.68659159604921	-0.144880979629149	0.630946731693988	0.894950326243773
Merged-chr19-10278001-3	chr19	10277496	10278496	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	26881.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	6.51413311814204	6.57468259366944	6.3388081178902	5.60622342620871	6.04282262940244	5.32687522082728	-1.30584567774199	0.000217196248667875	0.00535321844169329
Merged-chr13-58273911-7	chr13	58273389	58274389	+	874.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019832, intron 1 of 11)	CpG	299.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	3.97029151141739	3.68991108018496	3.81536963122809	4.03330837609824	3.43609366549075	3.78234916024007	-0.187335065090664	0.747483441478532	0.936632541920315
Merged-chr10-99469438-2	chr10	99468938	99469938	+	634.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139733.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	4.04641212312919	3.98698955879277	4.13457356511491	3.8606318843094	3.54557508659411	4.24435543243945	-0.449203477327177	0.4213225477717	0.790226764066497
Merged-chr1-90975692-2	chr1	90975192	90976192	+	588.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6072.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	3.76589264222803	3.76995716365424	3.53845983514764	3.4583728183995	3.43619374066084	3.37839719809084	-0.994548450165454	0.0856315973667256	0.387509071168449
Merged-chr4-35164478-4	chr4	35163992	35164992	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7008.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	3.5980845650699	3.45303925746796	4.01409363642505	3.58727981898735	3.56893612385123	3.55122713078776	-0.449039241915954	0.446437423174006	0.805889760011081
Merged-chr11-8497288-4	chr11	8496794	8497794	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 16 of 30)	intron (NM_001083587, intron 16 of 30)	167241.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.45572611624978	3.39014729519052	3.99144281838136	3.21736814330656	3.03004029511846	3.4512674061001	-1.5178573369084	0.024606832389986	0.185158736616563
Merged-chr9-65551199-4	chr9	65550706	65551706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28881.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.91097625353307	7.86114195560501	7.71970704861502	7.2131612626173	7.34062313058186	7.15371456893105	-0.864644141167857	0.000153525841505052	0.00405542165712774
Merged-chr10-43668120-4	chr10	43667626	43668626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74699.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	4.91043010005402	4.99988765270929	4.7183059971213	5.08005015444677	5.27035815972557	4.60881002141372	0.307059658248166	0.469992843834619	0.819255568236953
Merged-chr17-34135493-4	chr17	34134991	34135991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010386, exon 2 of 6)	5' UTR (NM_010386, exon 2 of 6)	-9925.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	5.32599928899607	5.46906501411872	5.36896719621083	5.87536123952265	6.01491695831294	5.72536562389641	0.915052862982282	0.00450342927129826	0.0568448638965695
Merged-chr3-79844171-4	chr3	79843627	79844627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	5.53846974735073	5.27874925853299	5.70222719678706	5.72874796036524	5.56942955409274	5.81279589969941	0.360627558350036	0.285227409872084	0.682812656672892
Merged-chr8-75213094-4	chr8	75212632	75213632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	-812.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	4.46263678651436	4.43256209297647	3.95440818025129	4.49150111404158	4.01372716104079	3.85584531405726	-0.417068364061587	0.449611567136815	0.807912363150876
Merged-chr9-52048097-4	chr9	52047559	52048559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001104617, exon 1 of 11)	5' UTR (NM_001104617, exon 1 of 11)	118.0	NM_001104617	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	7.16047360750838	7.10551503869056	7.33120914237392	6.9876565087928	6.72350753959726	6.86714641175985	-0.513470910049284	0.0399817706788878	0.248879421608218
Merged-chr7-27480880-2	chr7	27480380	27481380	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6073.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	3.38258582981677	2.9761388627956	3.37768683591888	3.01514563765581	3.06645417940935	3.4477738516566	-0.293696613088381	0.67092986087044	0.910258288590475
Merged-chr2-31689789-2	chr2	31689289	31690289	+	753.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001283047, exon 1 of 12)	5' UTR (NM_001283047, exon 1 of 12)	1252.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.80742006806504	5.57737350972535	5.70709608694632	5.95244041401042	5.84494405613958	5.74273439171032	0.276049349650325	0.375260129989146	0.758624025253248
Merged-chr12-82169315-4	chr12	82168823	82169823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-693.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.84407583664833	5.62004977932276	5.54480123985283	5.72554318884204	5.64095477361674	5.63635380920188	-0.0268828073464056	0.933094879741992	0.985356091252617
Merged-chr2-142859728-4	chr2	142859215	142860215	+	801.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	41749.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.22666818877922	3.03653710996123	3.01478209630495	3.12524665966627	3.14335927944686	3.14768795453075	0.170192859806135	0.794006136306917	0.950531747588938
Merged-chr17-86445114-4	chr17	86444622	86445622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-157944.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	5.37040883957988	5.20807965944686	5.16754025093286	4.54374553685211	4.34345480050926	4.50714284105087	-1.82113717614404	5.82095505636508e-06	0.000251798272146909
Merged-chr5-114934711-3	chr5	114934203	114935203	+	576.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 3 of 4)	MTB_Mm|LTR|ERVL-MaLR	-7499.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	2.69497110841091	2.79991436918196	2.9812671355351	3.17382117680359	2.85943279721587	3.05418696919711	1.00348847356491	0.162472126907939	0.53589809574695
Merged-chr6-113324076-2	chr6	113323576	113324576	+	541.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001282126, exon 13 of 13)	exon (NM_001282126, exon 13 of 13)	-2900.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	2.67276455430701	2.77514008296807	2.76421259840799	2.53212493056079	2.35367347222696	2.89566700323804	-0.696921311227452	0.403675456721777	0.778948248020816
Merged-chr14-120407024-4	chr14	120406513	120407513	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-71448.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	3.45580650727342	3.17346018215111	3.53553248875538	3.34435751888862	3.1405749449316	3.44931552498158	-0.319278199000972	0.613717430121322	0.887300906025089
Merged-chr7-26243288-4	chr7	26242798	26243798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-23533.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	3.94851101753046	4.19963020008162	4.14584781854446	3.83149185870004	3.4934900934158	3.93515040062232	-1.07958073106025	0.0476784345150092	0.276602686045566
Merged-chr18-32694861-4	chr18	32694366	32695366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-120517.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	5.15246662040724	5.1595546888447	5.0988438829463	5.31137635001758	5.14785571336099	5.65719047357104	0.475966005135688	0.198041057806356	0.586239294814874
Merged-chr8-71485953-4	chr8	71485454	71486454	+	873.395874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164679, exon 1 of 17)	5' UTR (NM_001164679, exon 1 of 17)	113.0	NM_001164679	382014.0	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	4.00463536691014	4.13341858368853	4.43732037585726	4.06743888422875	3.97403822070068	4.42468257681351	-0.10028560395166	0.843195181171924	0.96331130255476
Merged-chr9-21511232-3	chr9	21510787	21511787	+	899.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1053.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	5.05467179781188	4.7438243278652	5.07250832699037	4.89293074198756	4.83455592371565	5.19937106802529	0.0310478351176702	0.937813465406136	0.986165791448083
Merged-chr3-105047800-4	chr3	105047303	105048303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	B4A|SINE|B4	5150.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.59752790665822	7.79413519672506	7.59874582568359	7.83846443195265	8.24560630268774	7.67457609203807	0.405675814818935	0.112667294874821	0.448362918931755
Merged-chr15-81858764-4	chr15	81858240	81859240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	-414.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	8.41815115138141	8.52482076485067	8.46127708949185	8.42058007218033	8.72801289474955	8.47820176615558	0.117314663200587	0.581189960271055	0.873246537431079
Merged-chr11-48902200-4	chr11	48901705	48902705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-53.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	7.22052763683473	7.06650177054598	6.98660672157501	7.30261278027663	7.54917474759995	7.25120044455669	0.420910680809439	0.0875565237684753	0.392363379455369
Merged-chr18-56562436-4	chr18	56561935	56562935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138600)	promoter-TSS (NM_138600)	-134.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	4.4791782942771	4.21883483580931	4.25760507644372	4.36989848381251	4.26256437440284	4.49793344488471	0.120457701223617	0.791343157437131	0.949737938863565
Merged-chr7-118470634-4	chr7	118470124	118471124	+	698.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21351.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	2.9254102742475	3.19336481587331	3.28057024186427	3.38661429845882	3.29893984827924	3.71060132879963	1.33705459941748	0.0447733470940886	0.266801000828784
Merged-chr6-87850533-4	chr6	87850047	87851047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355195, intron 1 of 4)	CpG	559.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	9.05413214579181	9.32891074084499	8.96016654823396	8.89271446611824	8.85149208983351	8.75965434313793	-0.397328540029707	0.0608026400154839	0.319402122352213
Merged-chr6-145308012-4	chr6	145307501	145308501	+	892.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	57449.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	6.68604641539422	6.76733131905076	6.44024926679838	6.69382424447842	6.78655784156446	6.59160538670396	0.0800802316979897	0.763635310375279	0.941793063578371
Merged-chr7-30322404-4	chr7	30321919	30322919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-44.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	8.37071711970817	8.61618404099418	8.53561962563591	7.94065512397902	7.90646169570361	7.81521669877971	-0.873233347993378	4.15004776934175e-05	0.00135100616115567
Merged-chr7-64141026-4	chr7	64140509	64141509	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12826.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	6.5854371037765	6.83033116902258	6.76796029978696	6.62612690960453	6.85037732869768	6.68536877845751	-0.00240822810772803	0.992664153896094	0.998523796268552
Merged-chr3-109452175-1	chr3	109451675	109452675	+	894.3333130000001	f0_balb.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	111492.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.74653701724124	5.86765016652664	5.85805992957981	5.53762284582564	5.5186529720194	5.55535923177631	-0.533386034181724	0.0867129270823929	0.390131400817389
Merged-chr18-79288961-1	chr18	79288461	79289461	+	583.0	f0_balb.idr	Intergenic	Intergenic	-179570.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	2.58637072106383	2.64909512922486	2.84593936537425	2.49955543538256	2.59679381036966	2.97396869935177	0.032375461184867	0.967345260604198	0.992555129128888
Merged-chr2-73053266-1	chr2	73052766	73053766	+	573.0	f0_balb.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-72820.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.3702173643037	4.09928910430672	4.39503334007388	4.21130473416139	4.29411386226546	4.37738548914618	0.0100075136929255	0.982704464126188	0.996084390562607
Merged-chr15-76715341-4	chr15	76714838	76715838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145471)	TTS (NM_145471)	4697.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	5.63866382128278	5.81416556234529	5.89282878658488	5.46561926645426	5.28510568423102	5.57924382478665	-0.64354003833141	0.0507432716722165	0.286946140373269
Merged-chr15-59799438-3	chr15	59798939	59799939	+	967.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4480.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.26629044665271	4.52481281793989	4.19390321009351	4.12061059419919	4.02467422750967	4.39524903966341	-0.445513529151317	0.355499685551181	0.74242446189651
Merged-chr7-101361275-4	chr7	101360791	101361791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	13222.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.2784436742175	8.1096094742876	8.00379624344888	7.96997987229254	7.95735037285413	7.65349537370729	-0.374754940907085	0.103615299583564	0.429191884369916
Merged-chr11-49982533-2	chr11	49982033	49983033	+	948.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42798.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	3.23548397219811	3.04256098888492	3.02151284133168	3.28698521293011	3.00950531635939	3.15577695161249	0.201859408130411	0.761025715992866	0.941094532024528
Merged-chr7-130847399-4	chr7	130846923	130847923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18301.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	4.82306175271434	4.89188618539042	4.92425994794731	4.86679723323691	4.87986162367056	4.59311463415291	-0.182574764704659	0.644718885626713	0.900287351502017
Merged-chr6-57767293-3	chr6	57766785	57767785	+	727.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	57840.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	4.28467922635488	4.15751739330262	4.88711133463071	4.20833277579782	4.58445399537292	4.26256769404666	-0.26449310112329	0.607524433248279	0.884591975671487
Merged-chr4-155491735-4	chr4	155491231	155492231	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	CpG	370.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	8.6205897927656	8.22947112483926	8.2759799158687	8.44328714722585	8.09556083048248	8.28811192453863	-0.15149622134583	0.523428817045936	0.84820746264669
Merged-chr15-86142082-2	chr15	86141578	86142578	+	694.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 12 of 12)	intron (NM_145475, intron 12 of 12)	-43650.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	2.38005563192305	2.44415080760317	2.68380059797826	2.34089117955925	2.2410093464822	2.51580165904607	-0.877190169712117	0.299872698643971	1
Merged-chr8-67950438-4	chr8	67949934	67950934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	24140.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	4.88156986232898	5.14336956962514	5.15173794145631	4.82809394043009	4.84888697771077	4.79172441266166	-0.516343466724175	0.178962340569676	0.560321608436476
Merged-chr3-136668945-3	chr3	136668470	136669470	+	743.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1096.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	6.89440355503271	7.26947306007135	6.84493084789951	6.84599471196288	6.96671347961178	6.73046415339167	-0.256878621705567	0.341035569036918	0.730659982236591
Merged-chr12-70454244-2	chr12	70453744	70454744	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028339, intron 1 of 7)	intron (NM_028339, intron 1 of 7)	1090.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	4.72568710481892	4.63239347406815	4.73678909354513	5.31204724589189	5.21766003829046	5.16862155032432	1.17388708006261	0.00171138898345888	0.0274112135776028
Merged-chr7-73522782-2	chr7	73522282	73523282	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	18964.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	4.2095841752066	4.26192853908886	4.0574561857936	4.43665230351514	4.18989427669735	4.02463031625251	0.131505149295016	0.785919194658161	0.948244944450964
Merged-chr2-91098824-4	chr2	91098349	91099349	+	886.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	2171.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	6.63134553444542	6.48092926915863	6.51012144040607	6.67682341289611	6.71736728216714	6.36029559881003	0.0981625712995636	0.718589850498096	0.927402544945102
Merged-chr4-149099769-4	chr4	149099237	149100237	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019781)	promoter-TSS (NM_019781)	75.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	4.84273925345012	5.3945700166294	5.33140133262035	5.11184766185341	5.10060160232617	5.14329246945369	-0.191990708781327	0.62107477134539	0.890517830251339
Merged-chr11-69690997-2	chr11	69690497	69691497	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	5101.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	4.69892530545935	4.7434847909081	4.80537288709049	4.57230392396344	4.47186014772677	4.51449885981395	-0.549663161019387	0.178803708886993	0.560136868525682
Merged-chr7-126487276-4	chr7	126486762	126487762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163713)	promoter-TSS (NM_001163713)	-93.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	6.83847065192436	7.00790221260057	6.94108617528194	7.0789567905524	7.11219808840761	6.97136217002857	0.196268450867278	0.417966196143608	0.788440971405969
Merged-chr12-69332299-4	chr12	69331753	69332753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 16 of 32)	PB1D9|SINE|Alu	24923.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.54885837989243	5.60148008336678	5.83549994477477	5.79096380481713	5.91957461006717	5.96612037534176	0.425303935417985	0.173189601500351	0.55193311543606
Merged-chr5-124444401-2	chr5	124443901	124444901	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310725, intron 1 of 6)	ID4_|SINE|ID	-1098.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	4.82979908661069	4.79262420460049	4.62587257556742	4.78945756727589	4.7529343489543	4.88783812053276	0.106592236772996	0.787530277100638	0.94877064431094
Merged-chr6-87482827-2	chr6	87482324	87483324	+	685.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	13503.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.4431335881683	2.3688127619188	2.82909466158294	2.36561581938288	2.18767007856312	2.6117781674526	-0.971845932609039	0.27643224773698	1
Merged-chr13-69391784-4	chr13	69391331	69392331	+	828.983337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142033.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.43294301790838	4.37002602086963	4.23110026720125	4.93627011344723	5.23673073175549	5.01664602664991	1.68564401645865	6.75055241692964e-05	0.00203035684452822
Merged-chr11-89093314-3	chr11	89092827	89093827	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033266)	TTS (NM_001033266)	19486.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	6.86677480845195	6.912676234749	7.06100878403935	7.59661108252036	7.53489485840431	7.06557588691453	0.725217255258136	0.00594368607663542	0.0693246749459882
Merged-chr6-129236018-4	chr6	129235492	129236492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	MLTR14|LTR|ERV1	2053.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.49785455380212	7.26118065910362	7.38783202757355	7.45027958615649	7.65096604035654	7.53729818139267	0.243394217190036	0.295134218038734	0.691990077927385
Merged-chr12-86887770-4	chr12	86887265	86888265	+	960.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.08405725935486	7.02599833723566	7.21102242019164	7.42536349882756	7.7903461424177	7.54682667596022	0.736283785829995	0.00249498484863313	0.0366789221351706
Merged-chr12-112562778-3	chr12	112562246	112563246	+	775.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-26038.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	2.72081597896867	2.45461663288053	2.48784251504657	2.55339976006382	2.38264343471822	2.81084164833231	0.160742110154115	0.845504836515892	1
Merged-chr13-106946340-2	chr13	106945840	106946840	+	883.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-789.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	6.02513528563058	6.49332033169139	6.34336265482036	6.19025276235988	6.49399722754847	6.47612924234947	0.151567463541217	0.615711054431896	0.888073730124794
Merged-chr10-69222173-4	chr10	69221677	69222677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	MTC|LTR|ERVL-MaLR	8983.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.46484243645852	5.24638125470026	5.25184669692062	5.54788573776679	5.61332186857596	5.69509711102251	0.551296534948752	0.0986676303364815	0.418949620273275
Merged-chr11-60104934-4	chr11	60104433	60105433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009021)	promoter-TSS (NM_009021)	-80.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	6.77229664068375	6.17442095172008	6.54298222586674	6.70080919910223	6.23638174235409	6.42310186777923	-0.0878376614036672	0.781672667826851	0.946263466131325
Merged-chr16-35986531-4	chr16	35986031	35987031	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	3168.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	4.06496895622673	4.07379518901399	3.94324569745779	4.18755115232839	4.08604424245647	4.29500934139389	0.434824932943587	0.365320169836389	0.750427350624492
Merged-chr2-155309421-8	chr2	155308929	155309929	+	987.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 7 of 11)	intron (NM_001004721, intron 7 of 11)	33065.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	7.32926082149942	6.83253428502955	6.94757001123272	7.21794657959089	7.35890634306784	7.28540284920082	0.345688234989021	0.191182539631563	0.577822466760773
Merged-chr14-98814019-3	chr14	98813525	98814525	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	232111.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	3.70231662023772	3.25368298762329	3.31078555172514	3.06166824925849	3.18382125548058	3.08004637004075	-1.352211368804	0.0443705334986438	0.26530492608186
Merged-chr7-127849290-4	chr7	127848805	127849805	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009294)	TTS (NM_009294)	7497.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	7.41727442664846	6.80862649915588	7.12053764891548	7.52913462062508	7.30632875965094	7.20330004548865	0.318622551389819	0.253296469346387	0.650703693157585
Merged-chr4-146493471-2	chr4	146492971	146493971	+	808.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8529.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.68937925062186	3.86819421939394	3.91283901187462	3.44218592752975	3.49455937841677	3.93470016598652	-0.640006203035385	0.268120203384372	0.665267508072367
Merged-chr5-123820710-3	chr5	123820196	123821196	+	932.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042421, intron 63 of 63)	intron (NM_001042421, intron 63 of 63)	44820.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	2.46037807911839	2.35858520053847	2.53700288226399	2.32067273772601	2.39933182946712	2.3564110877765	-0.578015321886551	0.481499281276771	1
Merged-chr3-26932596-4	chr3	26932085	26933085	+	971.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029150, intron 10 of 10)	intron (NM_029150, intron 10 of 10)	221269.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	3.67837042736805	3.40581063476021	3.74307978648001	4.03594626311565	4.11912847559864	4.01428643249614	1.45531254571695	0.00730322236728524	0.0806271098231485
Merged-chr5-134231096-2	chr5	134230596	134231596	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1471.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	5.85663715515519	5.94662834275754	6.07156418115161	5.90133275172853	6.06792895896917	6.11060267961628	0.127735879744719	0.665878551598435	0.907944784370126
Merged-chr3-94612456-4	chr3	94611946	94612946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011656)	TTS (NM_011656)	-29730.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	5.86425916990048	6.08304966106084	5.81906141523159	5.59415426231806	5.57682961365409	4.92781404999635	-0.941240358330361	0.0131225152109866	0.121524568244382
Merged-chr11-94322690-2	chr11	94322190	94323190	+	574.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-727.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	6.86440589457222	6.86616185674472	6.9831169054884	6.82390069871212	6.95059847627574	6.84473295422074	-0.0366549511545286	0.881059240724389	0.97262624933271
Merged-chr11-80177737-2	chr11	80177237	80178237	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6135.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.58419332581799	7.15280359400638	7.39145432722292	7.32845168300049	7.54976191332391	7.46941675924232	0.0964780111799136	0.699793224372159	0.92073487393803
Merged-chr10-78069271-4	chr10	78068790	78069790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-78.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	4.95261486181839	4.90987261601576	4.94234098946344	4.91622159182694	4.7841489060344	5.00697358596307	-0.0826054095574847	0.827695898275292	0.959499015069944
Merged-chr14-31398870-1	chr14	31398370	31399370	+	541.0	f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	18807.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.30904451063912	5.50791497762271	5.71469093821876	5.50208555993087	5.56179509347852	5.32719436058349	-0.0693109248203367	0.840755533927385	0.962819298477451
Merged-chr16-31935425-4	chr16	31934930	31935930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	1579.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	8.17049498672073	7.96277752056263	7.93257618779763	8.26381322910788	8.54777522741847	8.04250986924284	0.394307419580191	0.101364981353941	0.424638626949352
Merged-chr19-47395633-4	chr19	47395115	47396115	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	68796.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.0890213383183	4.99463885060198	4.77843242933102	5.10169175389294	4.68616770558542	4.72192889135994	-0.256474117309806	0.530373042817857	0.851100828257122
Merged-chr9-44483986-2	chr9	44483486	44484486	+	771.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	1161.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	4.08678492956854	3.76372784848957	3.8202495081022	3.94585663807484	3.96154593063799	4.04001171400208	0.23847041629962	0.642996094731812	0.89955790576874
Merged-chr13-41615614-3	chr13	41615107	41616107	+	721.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	9391.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.11532944134032	5.1211375107759	5.10846182860856	5.10792740413002	5.28512405918962	5.1388359688218	0.145804550360596	0.6821960540899	0.915019815408995
Merged-chr1-26687407-3	chr1	26686859	26687859	+	792.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033764, exon 1 of 2)	exon (NM_001033764, exon 1 of 2)	101.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	4.19641067785744	4.67951599014079	4.56486512624051	4.08074546093336	4.12622259592831	4.55315430713919	-0.610696631458749	0.215600831228316	0.609020429470892
Merged-chr5-140612307-2	chr5	140611807	140612807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008494, exon 3 of 8)	exon (NM_008494, exon 3 of 8)	4966.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.24414352522537	4.29506211322839	4.86081780754348	4.3724212129798	4.24755648368508	4.68553205749107	-0.116559879348762	0.812875151236705	0.955841430155734
Merged-chr1-131446739-4	chr1	131446237	131447237	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	80624.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.65384366173172	5.76211905500711	5.87669342189734	5.72418348889859	5.69255317408479	6.17102712165974	0.190240666164932	0.564157227672695	0.866201054824694
Merged-chr5-118097596-3	chr5	118097097	118098097	+	865.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172721, intron 5 of 10)	intron (NM_172721, intron 5 of 10)	57861.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	2.78489195128304	2.992902577929	2.85671986885442	2.78378342671331	2.69475348392508	2.98860196155411	-0.304932107572191	0.673658773442675	0.911599177118521
Merged-chr9-90061122-4	chr9	90060623	90061623	+	949.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 2 of 10)	intron (NM_001312649, intron 2 of 10)	6856.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	7.08253009135366	7.21704958703462	6.65428385848822	6.79560032089821	7.27694085537999	6.7973644833723	-0.0425135444810507	0.887306039094532	0.973836995667151
Merged-chr6-5509335-3	chr6	5508798	5509798	+	921.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-13020.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	7.05582280176759	7.65495901055527	7.22592981901426	6.16883588695972	6.22006022243761	6.89746797677308	-1.35197699372341	4.50706360491579e-05	0.00144760355862147
Merged-chr15-6556426-2	chr15	6555926	6556926	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23421.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.76379294237376	6.93538371726217	6.789783836117	6.52851029793624	6.52207661918754	6.46387575138699	-0.516906736752307	0.043135834773264	0.260565682882894
Merged-chr16-24640476-4	chr16	24639971	24640971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-81384.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.68182445994036	4.55090142825122	4.27885603069258	4.43503190438314	4.05242102380265	4.72192008794366	-0.246488631162406	0.617277904014409	0.888808400312019
Merged-chr5-122268729-3	chr5	122268226	122269226	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4266.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	6.15729678046357	6.02946804835004	6.40860495069817	6.83862947888549	6.88227353467441	6.37246638610751	0.857639817580255	0.00413932271297653	0.0532752922353211
Merged-chr12-71048348-4	chr12	71047856	71048856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	32389.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	4.52929674241951	4.86779621703503	4.80523446666824	4.45303986020707	4.63457929816672	4.51417824264069	-0.476486307781796	0.263172916332261	0.661174276031846
Merged-chr9-121286573-2	chr9	121286073	121287073	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-9401.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.85752859045178	5.15194416642819	5.20896397740585	5.50098324995122	5.57736764175582	5.30569478234004	0.799044178025948	0.0270366725644017	0.195799899689694
Merged-chr9-118668719-3	chr9	118668211	118669211	+	847.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133721, exon 9 of 28)	exon (NM_133721, exon 9 of 28)	-42981.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.3580025537995	5.90431453606716	6.47377361408945	6.2159166901201	6.37859133556869	6.27531475529257	0.0575548452448307	0.852193942080251	0.96531854415899
Merged-chr13-34700192-2	chr13	34699692	34700692	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39450.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.0365023400005	3.78406404207862	3.7626700795214	3.74878211694147	3.74093176179857	4.07550055938808	-0.0489028337042	0.927530421558387	0.983584626679457
Merged-chr13-9369560-2	chr13	9369060	9370060	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	93035.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.18651593785659	2.98962606904159	3.02662575952427	3.07982690399917	2.78733129492104	3.27008544666415	-0.0738447487480578	0.916745966766468	0.981429139039476
Merged-chr7-6343776-3	chr7	6343308	6344308	+	894.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13374.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	2.99325333190576	2.8574952489599	2.94159340665041	2.9807550607334	2.74828314873087	2.76468326329999	-0.474469288810962	0.505718769402384	0.838177729332582
Merged-chr5-113627306-2	chr5	113626806	113627806	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16297.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.32671247636667	4.47059294318331	4.60438840521591	4.55865399102177	4.10348710457555	4.51201785924724	-0.173912337961878	0.709337282219986	0.923955477167413
Merged-chr15-79403298-4	chr15	79402801	79403801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253817)	promoter-TSS (NM_001253817)	2.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	8.12707620052117	8.40694944604201	7.89608051247085	8.302816658225	8.40136895824688	7.70060379880321	0.0183839362939258	0.947847102728506	0.988008807662239
Merged-chr4-53106225-2	chr4	53105725	53106725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	53670.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.86550642431315	2.69664808130886	2.83464358941264	2.99524324860881	2.46211027150046	2.65310648555783	-0.389091858342133	0.629593195474476	0.894364606069187
Merged-chr2-33452354-3	chr2	33451846	33452846	+	735.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027947, exon 4 of 4)	3' UTR (NM_027947, exon 4 of 4)	16186.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	2.62946721346424	2.55949983657934	2.82729419963445	2.83025997463037	2.76917397498769	2.8402198347882	0.755774807313304	0.307154648457454	0.703275198504384
Merged-chr11-8626350-2	chr11	8625850	8626850	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	38185.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.85110486353468	2.82898978897739	2.9623118819588	2.67671695488249	2.71931192928171	2.60625286431912	-1.11288821367008	0.136669779524308	0.49382446696806
Merged-chr2-75762042-2	chr2	75761542	75762542	+	580.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-57379.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	3.3427845984875	3.44857723453783	3.23254899618101	3.64806039781099	3.39565765435198	3.73695444188375	0.922212042248753	0.130793453898613	0.483347917569543
Merged-chr5-66114801-4	chr5	66114308	66115308	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16629.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.55403740196124	6.59165320357112	6.53898959666093	6.59827081665406	6.91906314856357	6.86653747098669	0.379985068398576	0.147949170836614	0.51321776824834
Merged-chr6-37396310-2	chr6	37395810	37396810	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	45838.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	2.96455916377766	2.88597284070943	3.06243040976812	2.8688187844262	2.88312615040779	3.07706871342698	-0.132428805592807	0.84667179072152	0.964089366427953
Merged-chr17-67343756-2	chr17	67343256	67344256	+	837.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	10703.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.3857447539109	7.49848335673892	7.07031952100317	7.16876400542598	7.29455941798593	6.98910804739194	-0.26061698953666	0.312469175106888	0.707170399766948
Merged-chr15-78754057-5	chr15	78753536	78754536	+	771.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19409.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.94839528869273	3.99141894886198	3.82124592160924	3.44664534689671	3.381867402353	3.39229513736691	-1.86351076918187	0.00124268844069628	0.0213551465868352
Merged-chr15-74960940-4	chr15	74960444	74961444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5838.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.88141906324569	6.80039854486052	6.76824675635281	6.89981238112408	6.88949592790764	6.57616761917751	-0.0203578742095181	0.937312433239528	0.986057836872162
Merged-chr5-148746944-4	chr5	148746459	148747459	+	893.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44D|LTR|ERVK	5119.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.68872846941014	3.95238436176913	3.87304512803661	4.26512843844087	4.61093576635353	4.15002374980585	1.50666061715484	0.00345155362681517	0.0467442829069071
Merged-chr17-34309952-3	chr17	34309495	34310495	+	842.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 2 of 5)	B3A|SINE|B2	4128.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.22223640838374	2.88407240829548	3.35691053185923	3.636246914905	3.74031407850517	3.54126939307093	1.92097095584616	0.00481061198836881	0.0596277971589739
Merged-chr1-138126986-4	chr1	138126464	138127464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48162.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.94440198673735	5.96660593320613	5.90971572190122	5.84802580170139	5.73598917583265	5.60216009182175	-0.364325018661787	0.230627289919412	0.626381219532661
Merged-chr5-140641012-4	chr5	140640456	140641456	+	884.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	8075.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	6.01965710097818	6.37114042225755	6.08329162543127	5.96826878708125	6.28077210621578	5.95719803311979	-0.142615840758858	0.645642795507823	0.900657290738149
Merged-chr5-31767003-4	chr5	31766499	31767499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	68949.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.28121419680497	6.83093855388495	6.56361834437673	6.72924437336486	6.61138909691441	6.89862508868438	0.25822589569076	0.376974285289835	0.759553389602068
Merged-chr7-24448950-1	chr7	24448450	24449450	+	665.0	f0_balb.idr	Intergenic	Intergenic	-3268.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	1.95070440159064	1.92289103817573	2.21084680412388	1.99115823119195	1.82760868173696	1.89292432069186	-1.06008661447211	0.282418851574423	1
Merged-chr11-55448329-2	chr11	55447824	55448824	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 3 of 3)	L1Md_F2|LINE|L1	12884.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	2.74302987909539	2.60159438431866	2.95914794687667	2.50393984289078	2.36181281416335	2.61879003366651	-1.65147817260518	0.045924800792276	0.270850513110863
Merged-chr1-30873120-3	chr1	30872619	30873619	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9863.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	8.41471058127954	8.21437739943196	8.14965160348051	8.43105477871587	7.89134790221064	8.10891230066132	-0.145972171316815	0.553018239414725	0.862020974976498
Merged-chr3-149088717-4	chr3	149088216	149089216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134081.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.91774440061788	4.74304143455535	4.53426276882056	3.83055103041655	3.60627890298521	3.87701561167004	-2.92469838470899	3.17085361137342e-08	2.57908491979628e-06
Merged-chr6-83649220-3	chr6	83648712	83649712	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6904.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.53742930926648	6.08760061524703	5.8918195048917	6.02598958782187	5.80588125771077	5.72388735554266	-0.000309041992343757	0.999269180208736	0.999910586345539
Merged-chr13-30657984-4	chr13	30657464	30658464	+	937.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2095.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	3.32107984382434	3.20987519384223	3.26373466426986	3.53813514169841	3.23920565754518	3.09114461387999	0.162545754545248	0.800933874766328	0.95272776419586
Merged-chr6-47562546-4	chr6	47561985	47562985	+	720.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	32545.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	4.1701918197153	4.33575644078386	4.15971363850883	4.24908910300635	4.12669777378739	4.18111840472528	-0.121899686946327	0.793220034101744	0.950312844775479
Merged-chr7-100495911-4	chr7	100495430	100496430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	2572.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	7.95201674957623	7.85017567363701	7.20754797939313	7.1338947300068	7.50797316538928	7.42917590607618	-0.510394464777726	0.078039989732621	0.368845675182172
Merged-chr7-55957999-4	chr7	55957483	55958483	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	4510.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.0035028760691	7.10719997781888	7.00982266837212	7.50364361327501	7.78868759985654	7.12245249411242	0.697759540383911	0.0100535269681308	0.100728704089243
Merged-chr14-70064457-2	chr14	70063957	70064957	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	2.87569642669998	2.83234473235861	3.13029997857046	3.1709667498187	2.781422364786	3.03008629777914	0.251985125125232	0.724298468358492	0.929311721511015
Merged-chr10-86972157-4	chr10	86971654	86972654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 6 of 68)	LTR41B|LTR|ERVL	35788.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.76850299493541	4.94648346881478	5.08657808991496	5.10570888422897	4.77726344413041	4.278709486859	-0.36500956041353	0.435781620932274	0.799370838506028
Merged-chr10-94576096-4	chr10	94575605	94576605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177026)	promoter-TSS (NM_177026)	-158.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	7.42270927130644	7.42556132605777	7.48966088743798	7.29103905778812	6.96771446814895	6.81492414497347	-0.595849116388135	0.0192229336992848	0.157336989968618
Merged-chr10-118052382-7	chr10	118051873	118052873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89414.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.77532479144738	8.92769464807369	8.363463389548	8.51760750332891	8.96116187536488	8.41262639872748	-0.077049779122362	0.7713622422803	0.943614978016208
Merged-chr6-146616794-3	chr6	146616299	146617299	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	17793.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	5.90492137579934	5.865080673746	5.39605341220303	4.03150168969625	3.85041871039429	4.20866819323882	-4.53108501573429	2.56657219605897e-17	1.09517609892141e-14
Merged-chr9-45299432-4	chr9	45298918	45299918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19682.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	8.27048382763372	8.25308173230519	7.89894880449852	8.33778808146964	8.51230493655137	8.07972895746929	0.238765151014013	0.323814267705321	0.717070860604774
Merged-chr4-154910192-1	chr4	154909692	154910692	+	557.0	f1_balb.idr	Intergenic	Intergenic	-11149.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	5.04148376101355	4.55153680784418	4.97051784937176	5.26859242756258	5.33644404093448	5.38985231337771	0.970384876959389	0.0129190759018574	0.120408159286955
Merged-chr2-165062675-3	chr2	165062173	165063173	+	846.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_170704, exon 3 of 9)	exon (NM_170704, exon 3 of 9)	7037.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	3.71568519974348	3.47622109236296	3.57834660905365	4.42891775672386	4.11645876032522	3.77129433726098	1.71020803187219	0.00281755504862593	0.0400922079676409
Merged-chr8-46765137-10	chr8	46764642	46765642	+	893.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	25397.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.07661088964812	6.9688786948101	7.03929831497951	7.10790509884721	7.194766120872	7.07093889089962	0.153337858343398	0.516874066056412	0.844321671216418
Merged-chr3-151748701-4	chr3	151748238	151749238	+	810.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133871, intron 2 of 7)	intron (NM_133871, intron 2 of 7)	1221.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	4.78239436969719	4.76871097510534	4.54123344403327	4.38898002473345	4.60405435546157	4.38504197848622	-0.572031813707783	0.183838342177496	0.567244140856875
Merged-chr11-69785017-4	chr11	69784513	69785513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029348)	TTS (NM_029348)	10924.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	4.51848491288743	4.51241489247039	4.72113850975863	4.51398352494781	4.15259702041995	4.24459555802267	-0.690374023412587	0.127642851318697	0.477644647082484
Merged-chr9-32542470-3	chr9	32541971	32542971	+	837.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.43244016156956	4.03402787257081	4.09661034974198	4.4027420211742	4.11337879605772	4.01372422173378	-0.0398213789441823	0.93691604296468	0.986037792257163
Merged-chr17-47755209-2	chr17	47754709	47755709	+	789.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	17278.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.6194019552658	6.6732311729848	6.85759392780611	7.20659726106463	7.06052283286424	6.64655312226527	0.442727803051759	0.110899938618904	0.444841551070303
Merged-chr14-51083451-4	chr14	51082965	51083965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7612.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	7.87150949993169	8.17534016327119	7.34933283042739	7.26173404738603	7.12763531551803	6.51774193961957	-1.21963508773199	0.000221764714513493	0.00544645760485205
Merged-chr6-3487570-4	chr6	3487056	3488056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6942.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	4.00348271433241	4.06536029207122	4.3297512365244	4.00359493848434	3.90634985839054	4.47379338494733	0.0196878148508771	0.969791545933017	0.993210926740941
Merged-chr6-108782030-4	chr6	108781494	108782494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1065.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	6.41557355877454	6.55799134340121	6.68383609935851	6.47242576213901	6.72562135859035	6.43444609755927	0.0146198675336435	0.95757889389111	0.98996830630481
Merged-chr5-122284758-2	chr5	122284258	122285258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_177242, exon 1 of 6)	exon (NM_177242, exon 1 of 6)	360.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	7.2780089902875	6.93901268298274	6.73972061979508	7.22489634023554	6.92287160006635	6.99457735680394	0.0595723000923249	0.829850643987684	0.960134151531511
Merged-chr10-4431502-2	chr10	4431002	4432002	+	643.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 1 of 13)	intron (NM_001358796, intron 1 of 13)	886.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	6.39436167759712	6.6352857581916	6.66133444955259	6.57641945308407	6.71096284220603	6.9103997826195	0.267292615989497	0.324467619245454	0.717544999689449
Merged-chr15-31477130-2	chr15	31476630	31477630	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 19 of 25)	intron (NM_172606, intron 19 of 25)	-23441.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.80930292528137	3.74334397493705	3.74486899071427	4.35554193065721	4.20223731505084	4.07857621474088	1.36302146021882	0.00693783501856011	0.0775918516430578
Merged-chr5-64243129-2	chr5	64242629	64243629	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	12772.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.59878186603131	4.64806649412246	4.72848558502585	4.68456073181578	4.70331596600483	4.75581841761015	0.135934063305559	0.734201739824738	0.932325051544019
Merged-chr9-32469235-2	chr9	32468735	32469735	+	626.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72217.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	2.99301257349768	2.9148077597972	3.45617629752669	3.21622044083242	3.06776890850027	3.42490927756238	0.428078317655556	0.539980374384901	0.856245552500013
Merged-chr13-70618953-1	chr13	70618453	70619453	+	546.0	f0_balb.idr	intron (NM_144837, intron 6 of 18)	intron (NM_144837, intron 6 of 18)	18681.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	3.56786383490716	3.40252528962708	3.44593115494672	3.40980119963004	3.23095001107434	3.56990956228677	-0.275037815587832	0.647269040859385	0.901297984333418
Merged-chr8-94012184-4	chr8	94011703	94012703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 1 of 13)	CpG	437.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	7.53388001766703	7.59561989592865	7.59726378268781	7.6127910316356	7.30290860979489	7.53957618150138	-0.128797056694751	0.578826816763445	0.872437129840066
Merged-chr2-35164308-3	chr2	35163799	35164799	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 31 of 43)	intron (NM_012018, intron 31 of 43)	32065.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	3.73176087349417	3.59661389220938	3.30935709103047	3.44440327545812	3.26909673203159	3.55166715307771	-0.540689029347283	0.37920908369922	0.761692242666705
Merged-chr6-106441031-2	chr6	106440526	106441526	+	572.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308011.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.25566459063632	3.11775208342546	3.19031814893378	2.8419491488147	2.84159920152463	3.0309600826194	-1.36172007928655	0.0480317699884801	0.27785712326545
Merged-chr13-21479168-4	chr13	21478663	21479663	+	949.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001039115, exon 1 of 3)	exon (NM_001039115, exon 1 of 3)	314.0	NM_001039115	544922.0	Mm.441300	NM_001039115	ENSMUSG00000054931	Zkscan4	AI841875|Gm11272	zinc finger with KRAB and SCAN domains 4	protein-coding	5.04184321240838	4.83641508418091	5.17059422065336	4.49883793883215	4.06485670914756	4.38613831644304	-1.69095274825273	0.000162484860587121	0.00423692895008873
Merged-chr15-41830871-4	chr15	41830375	41831375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130164)	promoter-TSS (NM_001130164)	-83.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.07902344244234	6.2838170868593	5.9250205404984	5.72970962340932	6.49604716405624	5.91166139667702	-0.00729622082364065	0.983634714928179	0.996399860725864
Merged-chr12-105032462-4	chr12	105031960	105032960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003145)	promoter-TSS (NR_003145)	-158.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	7.0984676513606	7.30746489782548	6.99541824079384	7.08084878890115	6.99638820700024	6.91135540751857	-0.2218833446923	0.371851264744149	0.755841610252976
Merged-chr13-33084365-4	chr13	33083827	33084827	+	812.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	224.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	4.39247070390032	4.19255854786962	4.26389232419217	4.82508589705512	4.81326852833719	5.03948729720327	1.46889587033577	0.00063699300040361	0.0127227348962035
Merged-chr8-31187376-5	chr8	31186931	31187931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286424)	promoter-TSS (NM_001286424)	100.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	4.58623462793247	4.89584825318795	4.78460411428046	4.11976616783894	4.07987710332601	4.12712086471911	-1.71210244617088	0.000175146715598854	0.00449525228610408
Merged-chr8-106413109-2	chr8	106412609	106413609	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2230.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	6.53227483949094	6.43172683148631	6.54217811604914	6.5420754784501	6.75884852651475	6.53132857958473	0.195738625797244	0.459651465672917	0.813819730244683
Merged-chr4-135884447-2	chr4	135883947	135884947	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10601.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	2.90162381612536	3.02036210530755	3.17825243133195	3.02459367822608	3.10897309594575	3.35632464073102	0.581560768945934	0.386878704986316	0.76724843120478
Merged-chr9-21506065-2	chr9	21505565	21506565	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 19 of 19)	RSINE1|SINE|B4	3829.0	NM_001324510	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	2.15194178162686	2.21776787451745	2.4454876302784	2.05265825659183	1.94791259552892	2.13767748967511	-1.80693351275583	0.0612655517801476	1
Merged-chr4-139761405-3	chr4	139760895	139761895	+	874.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011039, intron 7 of 8)	intron (NM_011039, intron 7 of 8)	71573.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	2.13871905121623	2.03075141686368	2.14219151468663	2.50893586333225	2.50882996588267	2.74071907927695	4.25431621058519	0.000379091636201784	1
Merged-chr16-4677184-2	chr16	4676684	4677684	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 1 of 27)	B4A|SINE|B4	2536.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	4.17440193584221	4.11578228412332	4.21084806624452	4.12713312793828	4.23078159303444	4.40706355824729	0.246058266366578	0.596835481644684	0.880063799680126
Merged-chr18-66002155-3	chr18	66001676	66002676	+	765.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027400, intron 1 of 13)	intron (NM_027400, intron 1 of 13)	459.0	NM_027400	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	4.65858854464122	4.39792917519979	4.9576938192964	4.73778953984728	4.29129316614364	4.32073960384442	-0.52185098319901	0.270477302038373	0.667432854436298
Merged-chr4-132747213-2	chr4	132746713	132747713	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9958.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	5.70460908378351	5.80981806401778	5.7416060751701	5.55833227640016	5.73902876459368	5.55739194175695	-0.228596941662156	0.468126880972106	0.818368836521776
Merged-chr8-70273114-4	chr8	70272615	70273615	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9884.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	4.21824705307954	4.57007524496482	4.31051220145683	4.31679281732858	4.54481979644955	4.18839059656191	-0.0274301456177554	0.953660920841189	0.989446911725587
Merged-chr1-135427597-4	chr1	135427090	135428090	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357578, intron 1 of 24)	intron (NM_001357578, intron 1 of 24)	2901.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	4.43413526483738	4.19103732193945	4.25029404303282	4.16345618932217	4.01136314205726	4.56470907093451	-0.113634740479297	0.817653105681314	0.956767881392089
Merged-chr17-5848887-2	chr17	5848387	5849387	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	7507.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	6.21803926316074	6.28799984970891	6.22469029553194	6.31809380980591	6.22878456707326	6.17999312358938	0.000122415388055452	0.999644301926364	0.999920050950963
Merged-chr11-120619308-2	chr11	120618808	120619808	+	646.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153056, intron 9 of 9)	intron (NM_153056, intron 9 of 9)	-1363.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	2.71773144958047	2.41945356667325	2.96445579237254	2.71474453798876	2.86063214844002	2.92219668551585	0.594819249532781	0.465136388760666	0.816829749833199
Merged-chr16-36711976-4	chr16	36711501	36712501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	18023.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	8.6060182876563	9.0281054432363	8.15508503857434	8.36244018544356	8.85857254505676	8.06079151265344	-0.240552936729199	0.44584664043936	0.805424390221004
Merged-chr4-40147693-4	chr4	40147207	40148207	+	767.604187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	ORR1C1|LTR|ERVL-MaLR	4442.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	5.59739504924093	5.68453922247897	6.18314374490769	6.30317209281828	5.82218298160428	5.96780522605541	0.368243329824743	0.292013052503658	0.689253845324812
Merged-chr14-31183870-4	chr14	31183403	31184403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347583, exon 14 of 14)	3' UTR (NM_001347583, exon 14 of 14)	-15262.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	6.9582395055475	7.03307699479067	7.58313336236484	7.10868162115593	7.07340280387072	7.26552857567471	-0.0981764303088988	0.727216605322891	0.930117738745381
Merged-chr1-165761671-3	chr1	165761165	165762165	+	805.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2093.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	4.78729621690477	4.74516100233113	5.25684905016986	4.96762027342272	5.02162841138531	5.03713705169173	0.158444605168791	0.692409631135853	0.918658098290308
Merged-chr2-102873581-3	chr2	102873086	102874086	+	789.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	28079.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.7976753725564	4.59944849777797	4.5922010521178	4.43513153572604	4.54684647199	4.98588716114941	-0.0072336443202643	0.98689107910202	0.997112900369387
Merged-chr6-125335899-1	chr6	125335399	125336399	+	686.5	f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	-13824.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.75778445043968	2.30224187234943	2.43826044730057	2.55196034246733	2.3688240893618	2.6428893199953	0.0424370824240097	0.960476337658739	1
Merged-chr10-58446420-4	chr10	58445930	58446930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-422.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	9.13188718531261	9.20799510956575	8.72731030451288	9.00037510457421	9.51101704311994	8.9363224033268	0.188427236874239	0.468497635590914	0.818673566064062
Merged-chr8-39621767-2	chr8	39621267	39622267	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 4 of 9)	intron (NM_001113326, intron 4 of 9)	20911.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.34389914131631	4.72215560969392	4.79822464364162	4.59227214754326	4.47948056054391	4.79109548090932	-0.0290648150624373	0.9474362086433	0.988008807662239
Merged-chr2-120568865-2	chr2	120568365	120569365	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	PB1D9|SINE|Alu	1194.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	6.12462113266434	5.71136070862496	6.16050120403338	5.96467165409075	5.78778170863203	6.03118435677052	-0.144972999663177	0.650622442948517	0.90265185343381
Merged-chr12-78225904-3	chr12	78225414	78226414	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-741.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	8.03125145149769	8.20497732844891	7.92208102555242	8.34590641890843	8.44461099956026	7.92126723691026	0.284836586806132	0.245114158389543	0.642381314494918
Merged-chr2-52982790-4	chr2	52982335	52983335	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B4A|SINE|B4	124967.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.92796398363108	3.80765562014016	3.8708299298913	4.09074979761932	4.12237864167184	4.2252213250478	0.818451443341307	0.0960146484608739	0.413091358279855
Merged-chr17-87107367-4	chr17	87106868	87107868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-311.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	7.88725603157681	7.75366293131441	7.75799774135484	7.85484649397725	7.83571745053345	7.60334715958738	-0.0393110083881531	0.860138030940396	0.967441103100897
Merged-chr4-3628208-2	chr4	3627707	3628707	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28299.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.1249556400358	5.40236549200777	5.06757427153969	5.44313857653015	5.4461478028915	5.48818532467155	0.475081895338112	0.176902932023166	0.557523640928096
Merged-chr13-41607813-4	chr13	41607306	41608306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	1590.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.85596100071468	6.55221787646873	6.44792848990304	6.85624883110558	7.11128463172054	6.54593024103746	0.363557615979305	0.218994519692757	0.613128894826908
Merged-chr6-115480473-4	chr6	115479978	115480978	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58412.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	7.5287883326838	7.58283641047763	7.43809039688547	7.4327089310831	7.50614694866863	7.44254307001164	-0.086223529814731	0.698570397303014	0.920392761604545
Merged-chr5-138995014-4	chr5	138994506	138995506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008808)	promoter-TSS (NM_008808)	-53.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	5.86059855028157	6.15194519605395	5.98646612250412	5.94395656571012	5.68538958333992	6.06934191014226	-0.191993838164047	0.541549207083849	0.856856498945272
Merged-chr5-115543525-2	chr5	115543056	115544056	+	719.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-15911.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	3.5981747505941	3.69358566913426	4.11207293246834	3.5538301683523	3.58578488145819	4.00808337834613	-0.283156061527548	0.63034177974386	0.894709964383782
Merged-chr2-154373382-2	chr2	154372882	154373882	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	-663.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	4.91532370914074	4.82775413784662	4.82923713570166	4.8681499810111	4.7316305686528	4.5681507575496	-0.28469115355255	0.474931888317551	0.821727753368561
Merged-chr2-163675902-2	chr2	163675402	163676402	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	17444.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.26693537934252	4.30372189127949	4.19555584945947	4.49473490469973	4.21610287932744	4.48493876440438	0.363592295926237	0.425338208907169	0.793032706839624
Merged-chr1-42851214-4	chr1	42850731	42851731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023514)	promoter-TSS (NM_023514)	-2.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	6.06555499849985	6.2049926664177	6.23028444034264	6.14382265337859	6.36309591040512	6.52762273832545	0.305441473944855	0.288912215332033	0.686339790168539
Merged-chr5-122702392-4	chr5	122701900	122702900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5144.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	7.31500137640979	6.79792471879487	7.08950152782882	7.32725277311627	7.15057600914275	7.18470923467419	0.206035539469465	0.437793836005984	0.800227351750493
Merged-chr2-91052939-2	chr2	91052489	91053489	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1027.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	4.40850437424107	4.4738062702779	4.72029663499899	4.5180056506816	4.1800532005946	4.67502467779259	-0.178350319503689	0.698236709822604	0.920276248984972
Merged-chr2-90564827-2	chr2	90564327	90565327	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	15820.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.20267824520986	4.17315537443088	5.09475729019404	4.50759233708434	4.14127101928224	5.04202356575223	0.108953493544526	0.901939710265997	0.977365418427752
Merged-chr8-78509796-4	chr8	78509293	78510293	+	911.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	465.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	7.52389073825128	7.88613202122093	7.51133601969565	7.85585257506015	7.93785630060552	7.52680333448631	0.193605380752929	0.44640423700654	0.805889760011081
Merged-chr7-143461122-4	chr7	143460630	143461630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161624)	promoter-TSS (NM_001161624)	-80.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	1.96436153086782	1.93320945499406	2.12982773099911	1.86251401388501	1.80131765353448	1.94068407740371	-1.22848726989596	0.21126972017597	1
Merged-chr1-171411747-1	chr1	171411247	171412247	+	1000.0	f1_balb.idr	promoter-TSS (NM_009480)	promoter-TSS (NM_009480)	66.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	7.11436055391705	7.33801343829418	7.19604934777829	7.45924923484586	7.4998318293673	7.42322046242707	0.357511375138273	0.122504327348833	0.46822875838501
Merged-chr4-148558584-5	chr4	148558098	148559098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355489)	promoter-TSS (NM_001355489)	-115.0	NM_001355489	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	7.2114525669893	7.73939991974011	7.5133118059212	8.06446186353193	8.14403839063907	7.6103210055064	0.659384895368073	0.0159426878962774	0.138645398669884
Merged-chr9-56995640-4	chr9	56995110	56996110	+	829.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019651, exon 1 of 13)	exon (NM_019651, exon 1 of 13)	642.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	7.22134039272483	7.37290828781903	7.26465275729518	7.30041390071056	6.97896672321905	7.07656257604228	-0.247025463547178	0.313222406195513	0.707836272539716
Merged-chr2-164785891-4	chr2	164785386	164786386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133924)	promoter-TSS (NM_133924)	-135.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	6.7224477172745	6.93017100190875	6.83442468305956	6.65480648487849	6.85806166995279	6.47651436270306	-0.230639709148628	0.390004046896174	0.769411213081462
Merged-chr1-91251585-4	chr1	91251096	91252096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1030.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	7.92784645894788	7.99379902460182	7.79345709525199	8.09546294989904	8.3204030960179	8.02557996393819	0.350293707480967	0.115929480793693	0.454604846499912
Merged-chr6-134253855-2	chr6	134253358	134254358	+	645.0	f0_balb.idr|f1_balb.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-142471.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.30586362162955	2.30225675864663	2.44766494692063	2.37438015828167	2.10416611137777	2.26254690395015	-0.690397434814167	0.42956331010421	1
Merged-chr19-12575568-5	chr19	12574985	12575985	+	826.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026640, intron 1 of 3)	B1_Mm|SINE|Alu	1960.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	5.83962814593295	6.15590170985253	6.26512421236244	6.30724295892382	6.69518423437863	6.76137226714523	0.836963315857123	0.00628909997834453	0.0722595182267456
Merged-chr15-77833910-2	chr15	77833410	77834410	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	MTD|LTR|ERVL-MaLR	8265.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.4659360841791	3.30057849094888	3.21527697247132	3.39605479145667	3.20860837959339	3.6122774188405	0.285115719599538	0.650623190548813	0.90265185343381
Merged-chr9-40811565-2	chr9	40811101	40812101	+	754.75	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	10328.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	3.787917639573	3.39884356953156	3.32675597494749	3.48393279326125	3.08695141416495	3.51381782088621	-0.567800966801681	0.38813729030508	0.768132421255919
Merged-chr7-107620295-4	chr7	107619760	107620760	+	912.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163557, intron 1 of 25)	MLT1-int|LTR|ERVL-MaLR	13416.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.40509253348228	3.26618048000993	3.18088120415406	3.14044361666073	3.07087968279557	3.42068407951786	-0.325775921895979	0.613788972813889	0.887300906025089
Merged-chr17-28691267-4	chr17	28690770	28691770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011951)	promoter-TSS (NM_011951)	-72.0	NM_001168508	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.42149550695467	6.04114433023317	6.42123143466106	6.12946881707284	5.95057097607456	6.15489190854143	-0.384767882692209	0.201087087947039	0.590591733927403
Merged-chr1-165604383-4	chr1	165603895	165604895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 4 of 5)	intron (NM_001083897, intron 4 of 5)	30146.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.34368761650218	4.20133551316506	4.09321632966327	3.83563039584482	3.97386370895607	3.80138060612357	-1.00645995128274	0.0461666683293621	0.271767678694698
Merged-chr19-21461410-4	chr19	21460884	21461884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010266, intron 1 of 13)	L1MB5|LINE|L1	11277.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	4.3138575653765	4.57212787684664	4.7335455071083	4.34675882867064	4.06934789579934	4.41155276769226	-0.697771371181008	0.135599845916373	0.492277136955042
Merged-chr2-150894751-4	chr2	150894226	150895226	+	832.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	10005.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.24896841976487	6.48126683604004	6.30907024334115	6.10196107766262	6.10871591682877	6.29085250260255	-0.317053510222385	0.261180132773363	0.658753455222977
Merged-chr8-35498480-4	chr8	35497972	35498972	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-2939.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	2.67130268957978	2.4662690157101	2.65957126194242	2.43091907238931	2.29305973326131	2.7328204405086	-0.629714634378667	0.453614368706088	1
Merged-chr3-36854226-4	chr3	36853715	36854715	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8891.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	5.23661756323498	5.34132507001869	4.77445964652508	4.7357970173471	4.37165411648332	4.4893744729767	-1.38395731076889	0.00138056797883932	0.0231928730836386
Merged-chr4-103285173-3	chr4	103284662	103285662	+	849.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027612, intron 1 of 8)	intron (NM_027612, intron 1 of 8)	5701.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	3.17859517590457	2.83155152915736	2.97358987199451	2.51848062042916	2.71936030743179	2.86695701025125	-1.53323689914928	0.0537978188360471	0.297455572444003
Merged-chr14-66279547-7	chr14	66279065	66280065	+	683.171448	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	1487.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.33292896528675	5.02013785181272	5.14003087913059	5.44303771464525	5.57343527444635	5.45964372850295	0.640709528938882	0.0669209058965105	0.338131815511103
Merged-chr13-101697019-4	chr13	101696514	101697514	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-4384.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.08145286004501	6.07720488558205	6.15206175092478	6.16372987238836	6.34214847299236	6.21241331010156	0.245853479070211	0.380468269704457	0.762567837783173
Merged-chr2-11549648-2	chr2	11549148	11550148	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	4281.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.08238646689956	2.92279390523333	2.95331771104985	2.71836412954068	2.70646080809574	2.57637526385355	-1.68097362304373	0.0295215599405173	0.206665821935939
Merged-chr2-130730943-4	chr2	130730472	130731472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-33453.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	7.36219757522823	7.01492566939866	6.91608680610946	6.50377669135278	6.6398166251572	6.88911185661432	-0.67462808866836	0.015126524150705	0.133458575074951
Merged-chr19-41994324-2	chr19	41993824	41994824	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	12561.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	4.12718795861875	3.76634597506519	4.01809555596745	3.90060860666508	3.45792927322346	3.94475854337537	-0.62417893324021	0.272253139069401	0.66957228728421
Merged-chr19-47142553-3	chr19	47142005	47143005	+	680.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081271, intron 1 of 1)	intron (NM_001081271, intron 1 of 1)	1669.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	2.99562192535249	3.08639057952699	3.34285573307421	4.01789448398632	4.05443750632261	3.75961578477181	3.40983111905749	1.18302752353456e-06	6.29610024096269e-05
Merged-chr8-25602815-6	chr8	25602333	25603333	+	872.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	549.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	7.50808172763038	7.49774816860302	7.66069242990084	7.69088519706047	7.79235498889936	7.69950280885535	0.257477280565126	0.242030900437651	0.639104507431288
Merged-chr14-48446302-4	chr14	48445757	48446757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172600)	promoter-TSS (NM_172600)	-95.0	NM_172600	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	7.1604921587207	7.20502483914066	7.01529137893589	7.53897249182753	7.06545568163025	7.17769854958564	0.214470197650238	0.41149763190845	0.783952169517317
Merged-chr8-70426721-4	chr8	70426233	70427233	+	982.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	12840.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	3.72956154602701	3.53934796055168	3.54151283936932	3.76959937930921	3.50965811031614	3.72006264674081	0.195947264880226	0.727660231914374	0.930204882969987
Merged-chr11-30291281-1	chr11	30290781	30291781	+	713.5	f0_balb.idr	Intergenic	Intergenic	-71509.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	2.26340019923833	2.12396384322965	2.27744503243491	2.28459436098881	2.12486466355256	2.41612054178546	0.37134468711431	0.670637191638303	1
Merged-chr3-81047249-2	chr3	81046749	81047749	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10833.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.56263458771982	6.95352298102302	6.67442113673215	6.51866183938966	6.8988959230373	6.23896337095358	-0.232604174458037	0.454972461177813	0.810667220918724
Merged-chr16-91384177-2	chr16	91383677	91384677	+	656.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 2 of 7)	intron (NM_001347258, intron 2 of 7)	11394.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	5.47161612084964	5.67155532902451	5.99105092502526	5.48006547951168	5.71142236526828	5.2813731488472	-0.377811626550133	0.294628931417947	0.691490357118739
Merged-chr8-105636822-4	chr8	105636295	105637295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358924, intron 1 of 11)	CpG	257.0	NM_001358924	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	8.21700793025171	7.82431279940743	7.83938001165853	8.14022128304462	7.7100283773489	7.8710457843649	-0.0828132475525106	0.743391270884892	0.935615824630138
Merged-chr17-46248034-4	chr17	46247534	46248534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145353)	promoter-TSS (NM_145353)	11.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	7.0904258856247	7.17379483707407	6.98439109154458	7.03528973250338	7.0760334378168	7.06915102607378	-0.045331852834246	0.848764380473919	0.964368239368528
Merged-chr4-132345134-2	chr4	132344634	132345634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 1 of 9)	CpG	616.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	6.3242670482233	5.98193202050793	5.74536369273758	6.45089115227629	6.29743159546329	5.6912398194859	0.250016337547897	0.489071676949717	0.829459847891797
Merged-chr17-8802384-4	chr17	8801877	8802877	+	986.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	CpG	632.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.25455173740124	5.03524551988099	4.97460872128364	4.22985185264131	3.95942542023176	4.30525238500757	-2.36893660203026	1.53428890360499e-07	1.03961816849482e-05
Merged-chr11-87425898-2	chr11	87425398	87426398	+	855.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	B1_Mus1|SINE|Alu	-1693.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.20207228554813	7.56000111258874	7.33366748957269	7.51197760578934	7.76336852223874	7.4239667074741	0.2999686648263	0.231258765407242	0.627100516604393
Merged-chr17-56584853-4	chr17	56584349	56585349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	-133.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	8.61705203604779	8.80577311733947	8.17706538517179	8.41720142592731	8.498695546666	8.29912642628858	-0.217820720015625	0.376370208933183	0.759175760202243
Merged-chr1-174031870-4	chr1	174031368	174032368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172648)	promoter-TSS (NM_172648)	-113.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	6.15142867780385	6.16249931570152	6.13682479783318	6.22104623116415	6.37432544207817	6.06309500086992	0.14422633603558	0.613020909329792	0.886978895339216
Merged-chr2-155107461-4	chr2	155106948	155107948	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-7369.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	5.99885197822147	5.64557517240253	6.05923972467116	5.66087625383739	5.71678836338604	5.89811339005188	-0.268803718900583	0.405783126761308	0.780439975167702
Merged-chr8-125054068-4	chr8	125053558	125054558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-137.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	7.61765359155109	7.54815620235969	7.46773004239686	7.50116572116971	7.7122193314336	7.42950126848224	0.0171871452346974	0.940775810805818	0.986888338850358
Merged-chr11-98773923-4	chr11	98773426	98774426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145434, intron 1 of 7)	CpG	1451.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	8.01470357410973	7.76884849902708	7.64081825560155	7.78239995796257	8.11060787991071	7.50558112912457	0.0169216745851483	0.949117188216025	0.988169196639905
Merged-chr2-165326567-4	chr2	165326062	165327062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207706)	promoter-TSS (NM_207706)	-83.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.71393025188943	6.49345496903773	6.54421047780481	6.66668136495486	6.6989532610968	6.25137557360821	-0.0350377576899476	0.901830327035941	0.977356766938531
Merged-chr9-47581139-2	chr9	47580639	47581639	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	50787.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.18819525310151	5.10760204763278	4.79312714993398	4.62495194558531	3.99796404287199	4.66017626800108	-1.38485638705186	0.00372982077749926	0.0493796224748065
Merged-chr14-99899718-2	chr14	99899218	99900218	+	947.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010636, intron 6 of 6)	intron (NM_010636, intron 6 of 6)	250078.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	2.19631569261166	2.12792486012862	2.43429746309401	2.09811555501068	2.09263682210101	2.32192647614364	-0.588197209257201	0.512970669099565	1
Merged-chr8-120119150-4	chr8	120118663	120119663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5011.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	5.27436126219387	5.54872022698746	5.77225240020832	5.37122418818661	5.38187193745557	5.14400046726916	-0.439824817121898	0.22334886601282	0.618087468987021
Merged-chr9-96392113-4	chr9	96391640	96392640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27709.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.74343548015878	7.46630236835267	7.55533426780956	7.8115790375855	8.09551199504235	7.6412759254689	0.398450650174181	0.106281230411458	0.43523050445773
Merged-chr5-140337374-2	chr5	140336874	140337874	+	687.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356584, intron 4 of 4)	B3|SINE|B2	5418.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	1.78469610325587	1.7566750390367	1.98586970892475	1.59831256540781	1.6574478494634	1.86359661470144	-1.26939245045793	0.240559436917576	1
Merged-chr14-16242763-1	chr14	16242263	16243263	+	670.0	f1_c57bl6.idr	exon (NM_001359883, exon 2 of 3)	exon (NM_001359883, exon 2 of 3)	568.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	7.31539550660693	7.66172137581998	7.21022769010477	7.36224969386135	7.34054959200577	6.97200499429243	-0.255705285238668	0.340529217227564	0.730173453949955
Merged-chr1-91299989-4	chr1	91299561	91300561	+	942.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	1723.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	5.04004981370738	5.27505687821564	5.07589224643255	5.00832070964286	5.13559673570665	4.99813035789855	-0.177114248569086	0.630445269452206	0.894734411238057
Merged-chr19-55257595-5	chr19	55256970	55257970	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	B4A|SINE|B4	4101.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	3.17094035229423	2.86860974781945	3.04009491753541	3.10930145669383	3.31499828351306	3.39614148100573	1.05072609061704	0.119615622409387	0.46226263106406
Merged-chr2-148857153-4	chr2	148856656	148857656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6222.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	5.64309679120618	5.69770921021613	5.94918200736995	5.70411486002825	5.75031111144968	5.63896405871452	-0.10402519587475	0.742360976007962	0.935192080236037
Merged-chr15-81022219-1	chr15	81021719	81022719	+	732.333313	f0_c57.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	44454.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	4.99691883602983	4.70271612004403	5.11925890241211	4.84838465698799	4.88402185465483	4.75770449570745	-0.237049387210393	0.552940451634169	0.861983853430146
Merged-chr3-32721825-2	chr3	32721325	32722325	+	849.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019673, intron 11 of 13)	intron (NM_019673, intron 11 of 13)	13279.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	3.76160886663748	4.04966434352429	4.46745990631842	4.1948182715665	4.25027569179301	4.57029752911209	0.615966827969746	0.245798853062343	0.642821080898342
Merged-chr16-56062232-4	chr16	56061709	56062709	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	4679.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	3.09648215446842	3.30077293688362	3.55429484745104	3.27443306153895	3.27887182929312	3.7192152964064	0.416587336207152	0.523931044756549	0.848428438699863
Merged-chr15-64082413-3	chr15	64081900	64082900	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID|SINE|ID	-21952.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.97406604702256	6.09194252172375	6.22634547766674	5.78254509412854	5.99109186401286	6.08176375474885	-0.242966832090321	0.418140399092611	0.788473936634102
Merged-chr5-30887458-4	chr5	30886940	30887940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	5.97382970061455	6.06026982626376	6.16299607213333	6.12769577396168	6.2299335976066	6.34016380501958	0.287907810528622	0.312050753558334	0.706880086573454
Merged-chr10-50740275-4	chr10	50739771	50740771	+	813.770874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 30 of 41)	intron (NM_198007, intron 30 of 41)	147602.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	3.53067773671165	3.46260757310268	3.16597317717571	3.48556488972921	3.14291593947883	3.52964364825985	-0.0305202769927868	0.962433758420601	0.990858153530085
Merged-chr1-58421583-2	chr1	58421083	58422083	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042634, intron 2 of 12)	intron (NM_001042634, intron 2 of 12)	2505.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	4.40582969710393	4.52617957944163	4.46555620394491	4.45030372250692	4.54801743212639	4.76711966269308	0.297347080855164	0.487867430562952	0.828740765241895
Merged-chr11-4848828-7	chr11	4848358	4849358	+	970.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010898, intron 1 of 15)	CpG	686.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	7.70645913088901	7.73477599294908	7.43320877658092	7.8739121734219	7.59324074293012	7.43567406369848	0.0194764776640307	0.937589333148006	0.986057836872162
Merged-chr7-27508181-4	chr7	27507686	27508686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019412, intron 5 of 5)	CpG-12884	8862.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	5.91076678139465	5.73237976661575	6.58876829684857	6.14680864527465	6.0315570680038	6.37069420855443	0.107712848512738	0.764867782534031	0.942093382415686
Merged-chr3-96597895-6	chr3	96597465	96598465	+	792.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024851, exon 2 of 2)	exon (NM_001024851, exon 2 of 2)	1329.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	3.473007753033	3.20386161806309	3.16790727875314	3.27212530805652	3.26062701808667	3.46748874852837	0.151953499676626	0.809546208111984	0.954749848816598
Merged-chr15-103366643-4	chr15	103366120	103367120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010577, exon 1 of 30)	5' UTR (NM_010577, exon 1 of 30)	171.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	6.29657579100336	6.47875009622835	6.62385468469271	6.7987697371428	6.59107948282993	6.77572958984419	0.406155204100638	0.132930169571955	0.487842524136338
Merged-chr6-89280760-4	chr6	89280310	89281310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4915.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	7.04047004426411	6.93320226299752	7.02378094145244	6.97711751720701	6.97479419500116	7.04235941198249	-0.00354306986460381	0.988142043546846	0.99731652667245
Merged-chr9-61349934-4	chr9	61349426	61350426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-22440.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.22492815127493	3.61082239158725	3.89159895778458	3.90357475752683	3.56087446860542	3.75487515367336	-0.604180062635989	0.296290191874714	0.693022144754045
Merged-chr3-96562614-4	chr3	96562123	96563123	+	821.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023719)	TTS (NM_023719)	4178.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	5.40752630648585	5.50453703254523	5.72999867628905	5.60741191034306	5.96137500044036	6.06462662497325	0.629039159781259	0.0602853213144291	0.317819138975538
Merged-chr16-19973094-3	chr16	19972605	19973605	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9944.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.4858539558011	4.75293896559495	4.95940027040589	4.7973755766342	5.02559985000595	5.30162173342568	0.691429840702613	0.100725192137016	0.423286414777412
Merged-chr7-113614647-4	chr7	113614141	113615141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49654.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	4.18213731306511	4.33816527875328	4.00700890044276	3.99087604235953	4.05242610265833	3.75178453800964	-0.702264921326286	0.17263056198603	0.551230561617291
Merged-chr11-101116657-2	chr11	101116157	101117157	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_155071, intron 1 of 6)	polypurine|Low_complexity|Low_complexity	3184.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	4.7430041543311	4.78472839771723	5.16164752575758	5.30279396498385	5.45388905805706	5.28871382601751	0.962714823956181	0.0104601830319412	0.103664948751996
Merged-chr9-123929082-5	chr9	123928600	123929600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39592.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	7.70977662533597	7.69198523721829	7.45913876122873	7.80309638307703	7.969159928345	7.417204799767	0.187602018233352	0.462284564016106	0.815159087955196
Merged-chr17-45558875-2	chr17	45558377	45559377	+	914.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_008690, intron 2 of 5)	L2c|LINE|L2	3177.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	3.96280242857059	3.52010464962048	3.78067750201119	3.8599274646002	3.7896422761089	3.94957002602961	0.305939723522631	0.577080905244104	0.871952040678671
Merged-chr13-5890145-2	chr13	5889645	5890645	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28656.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.44182469062552	3.16480562073489	3.49279944878145	3.22004227198254	3.1030773550063	3.35065622542851	-0.598778857494619	0.346544981668758	0.734711689104559
Merged-chr4-11559450-1	chr4	11558950	11559950	+	540.0	f0_balb.idr	intron (NM_001039556, intron 1 of 14)	intron (NM_001039556, intron 1 of 14)	530.0	NM_001256145	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	3.15066609048499	3.18696766165413	3.23994295679984	3.5835502133	3.06933440268236	3.25433593162594	0.518424956626616	0.429048136161298	0.795570481157701
Merged-chr17-50415843-4	chr17	50415344	50416344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-93703.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.47714566074202	6.5480019228576	6.71202089196547	6.80081284903567	6.90612607689016	6.73949901180519	0.388637508065387	0.130925172870481	0.483590339003102
Merged-chr2-90442317-2	chr2	90441817	90442817	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 21 of 23)	intron (NM_008982, intron 21 of 23)	36857.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	1.90284273709632	1.87484205723661	2.16487746317477	1.83790851154682	1.84223986085541	1.84207738901465	-1.2089502131188	0.225661217688362	1
Merged-chr11-94381080-4	chr11	94380615	94381615	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11861.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.96373928329215	5.73102687823736	6.06142022332289	5.82104773545879	5.91185686482857	5.79586656347814	-0.124149389186883	0.687110987207933	0.916983035113856
Merged-chr19-5572485-4	chr19	5571976	5572976	+	959.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4452.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	7.77095578689233	7.88659832455781	7.87829289916008	7.90807517597376	8.14489589126389	7.69425460722462	0.131787973239298	0.574774666794717	0.870875147489025
Merged-chr14-55728470-4	chr14	55727981	55728981	+	982.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6218.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	4.08082548159362	3.85177466896671	3.98906856465535	4.02727797997228	3.95947270376658	3.85635404292363	-0.0723832757961844	0.885761941002272	0.973636976161493
Merged-chr7-120837291-2	chr7	120836791	120837791	+	618.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5540.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	2.67874469774181	2.6041922602438	2.86559033251868	2.62552494817203	2.58793558778064	2.93747092967778	0.0207717430754498	0.978288858115909	0.995097513112614
Merged-chr16-3847194-4	chr16	3846704	3847704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081217)	promoter-TSS (NM_001081217)	-19.0	NM_001081217	385674.0	Mm.244261	NM_001081217	ENSMUSG00000054939	Zfp174	Gm1754	zinc finger protein 174	protein-coding	4.6513078397116	4.59297596745386	4.8327343062972	4.6258977498704	4.61645982955135	4.7509675740853	-0.0644509967221001	0.874406409682063	0.970754540400126
Merged-chr14-73525013-4	chr14	73524544	73525544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172527, intron 3 of 4)	CpG	205.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	7.41412198343595	7.54050935457373	7.47382560347426	7.54051882036759	7.28343488908852	7.41682325748896	-0.09185028898247	0.691209653425269	0.918256515929559
Merged-chr3-55612382-4	chr3	55611905	55612905	+	902.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150677.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	3.2254004356048	3.08929042025424	2.97894619711968	3.30321679916721	3.12385258771911	3.17497831794389	0.410904689468612	0.530947867957692	0.851363932161699
Merged-chr4-63389915-4	chr4	63389427	63390427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8313.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	7.21454032408742	7.11063577140755	7.01955856833745	7.26818079601172	7.31105186547566	7.07731294179801	0.161738024393724	0.50185126513008	0.836047011210757
Merged-chr13-9093754-4	chr13	9093268	9094268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-113.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	7.94506811061104	7.74957870509211	7.48154016085488	7.71317232808763	7.43107549367474	7.75585594823917	-0.158583027283801	0.529934800554037	0.851070276054813
Merged-chr3-105018997-4	chr3	105018500	105019500	+	971.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33953.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.08705741442532	7.08033003988224	6.67675029565148	6.93104574114748	7.17762190175776	6.68424783764646	-0.0196573368809616	0.944738520990682	0.98786315338489
Merged-chr6-83162830-6	chr6	83162342	83163342	+	828.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027948, exon 4 of 4)	exon (NM_027948, exon 4 of 4)	-3082.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	3.08628806758069	3.08248357660514	3.15140152042629	2.90657055053038	2.91906497441772	2.86684909305025	-0.980906620412988	0.14985442140786	0.516430953143218
Merged-chr16-14317381-4	chr16	14316881	14317881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025345)	promoter-TSS (NM_025345)	-49.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	6.79830494835758	7.03522244178514	6.88935722717299	7.14324123058565	7.18536985370174	6.97617683289139	0.299898649662821	0.226791582775526	0.621775091254891
Merged-chr10-19956145-3	chr10	19955639	19956639	+	680.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	URR1B|DNA|hAT-Charlie	21613.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.17848290746523	4.17372391160256	4.31397774740051	3.92100205573397	4.12224023904444	3.96445488637345	-0.590963541923848	0.223850560542383	0.618583157039309
Merged-chr2-52955280-4	chr2	52954770	52955770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	97402.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.75112900048793	7.79871512463021	7.57295990708417	7.52313591555008	7.91854821236315	7.36348379876041	-0.115259895888297	0.655233290413307	0.904171737984219
Merged-chr2-52606202-4	chr2	52605679	52606679	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	L2a|LINE|L2	-47568.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.18821335445201	2.81003845462503	2.83258485348458	2.82090418537787	2.75829226196985	2.96805600045089	-0.540847176179809	0.459852343571703	0.81399380957703
Merged-chr11-95845712-2	chr11	95845212	95846212	+	852.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001284397)	TTS (NM_001284397)	2467.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	4.88923599499976	4.65193746930788	4.81464520455516	5.03754190979694	4.79659689230687	5.15559705329952	0.4594405578909	0.248358945522299	0.645478389539464
Merged-chr12-70140742-4	chr12	70140245	70141245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-13426.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	5.01188150253192	5.25310742414304	5.12354258766771	5.15355267135745	5.34720113696098	5.51994673146685	0.420153803919602	0.246817468464029	0.643949687388461
Merged-chr16-30945116-4	chr16	30944599	30945599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136333.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	6.82896744857557	6.4110393965277	6.26691596927509	6.09583637069833	6.23145982252898	6.49790245662893	-0.4151781275282	0.182574914255262	0.565398543501872
Merged-chr4-109251876-2	chr4	109251376	109252376	+	732.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033226, intron 7 of 7)	intron (NM_001033226, intron 7 of 7)	16244.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	3.23034208576888	2.91635957973097	3.10555728792516	2.86723732423611	3.07221957285851	3.28815265223619	-0.0318838364488256	0.963489201819118	0.991116725160803
Merged-chr13-67451611-4	chr13	67451118	67452118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177712)	promoter-TSS (NM_177712)	6.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	5.46354839762477	6.04040733943171	5.8167985847903	5.91110892466817	5.81153621953549	5.99603954746385	0.186790963191663	0.577796647608843	0.87219514592351
Merged-chr13-46930031-4	chr13	46929518	46930518	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-300.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	6.67672411674503	7.17643683327301	7.2561994533403	7.09245720232191	6.88285006050251	7.23555116319091	0.0229819273586539	0.935805032095541	0.985953563515988
Merged-chr3-88640598-3	chr3	88640044	88641044	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 14 of 21)	B3|SINE|B2	12598.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	2.67058087963226	2.56103030390305	2.76213168414239	2.58099775557221	2.45232769249081	2.94975273158625	0.042943970041636	0.957032571844094	0.989887454023164
Merged-chr5-147871672-4	chr5	147871162	147872162	+	952.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 4 of 5)	intron (NM_025624, intron 4 of 5)	11034.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	4.39191808992609	4.02889203285716	3.90951080596818	4.17832651216741	3.89317868653164	4.44030244710241	0.134817696870504	0.800238012121567	0.952428832140568
Merged-chr6-86504358-4	chr6	86503868	86504868	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16141.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	6.33724274531681	6.61902509635654	6.46241985810326	6.47268051153534	6.63626954968172	6.41009791127971	0.0600117285703675	0.826929070254498	0.959278302444461
Merged-chr9-48576950-1	chr9	48576450	48577450	+	810.0	f1_c57bl6.idr	Intergenic	B4|SINE|B4	28173.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.7166266989828	2.57311303219852	2.89213904758896	2.64325019920454	2.39681850505284	2.8492629033458	-0.495517822866298	0.540477103305257	0.85632302227606
Merged-chr15-74929552-1	chr15	74929052	74930052	+	1000.0	f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-25499.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.58570091102895	5.53055455244874	5.67646646830027	7.20067976762236	7.52180060740181	7.09007290769092	2.78038839041653	4.79310483608646e-22	4.63749613024514e-19
Merged-chr10-99166086-5	chr10	99165459	99166459	+	794.119995	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	57824.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	5.06577801088366	4.87131029668501	5.0842867416128	4.82191075654671	4.62464510381722	5.11566859240594	-0.334054553508292	0.407673294902563	0.781797550673247
Merged-chr6-48083982-3	chr6	48083480	48084480	+	934.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362062, intron 1 of 5)	intron (NM_001362062, intron 1 of 5)	2613.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	3.48508400489864	3.28468301017907	3.70159658848056	3.49843442168901	3.54691393069843	3.51416105511227	0.101086316458818	0.864285342721597	0.968269312109804
Merged-chr8-70635672-4	chr8	70635164	70636164	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3208.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.36129146831904	6.04843379010897	5.96783749627289	6.13286635384471	6.21030282015217	6.24898549036244	0.0863862486171129	0.770873897140873	0.943471821158735
Merged-chr11-60830669-4	chr11	60830160	60831160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145428)	promoter-TSS (NM_145428)	29.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	7.39751116096436	7.34618107141593	7.25293985659114	7.46763820266689	7.57493109380329	7.14849863868075	0.122541222959585	0.618731977503891	0.889515655407396
Merged-chr9-31168902-3	chr9	31168403	31169403	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001102456, exon 6 of 17)	exon (NM_001102456, exon 6 of 17)	-37104.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	4.81720758505783	5.14919685335162	4.7713978918357	4.35366505904321	4.43532691447041	4.63954372921972	-1.07907016992852	0.0113221404744878	0.109813808672477
Merged-chr3-95652463-10	chr3	95652086	95653086	+	961.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6135.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.27435890903576	8.14359912641688	7.96700494712157	8.0885161852443	8.35232722612194	8.30303919163762	0.161353915127572	0.470489565096095	0.819495618343931
Merged-chr1-182516863-4	chr1	182516251	182517251	+	846.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 1 of 20)	intron (NM_009794, intron 1 of 20)	859.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	4.73376772762185	4.45344841020611	4.26262231829798	4.24069825546893	4.00238925359964	4.03112663334736	-1.10384331872127	0.0225087612777369	0.174622677566042
Merged-chr5-136246082-4	chr5	136245574	136246574	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1134.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	6.63183555502536	6.60898453202213	6.9887976917965	7.35274607087722	7.37026125844526	7.11188405010175	0.830752030346953	0.00143910957774115	0.023968260557383
Merged-chr3-108442519-3	chr3	108442028	108443028	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	PB1D11|SINE|Alu	2731.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	3.99721229384193	3.79330380867413	3.69787264203918	3.83132789952258	3.52964659170256	3.76891801477749	-0.423836386184219	0.441646151199628	0.802789517411278
Merged-chr15-67174163-4	chr15	67173670	67174670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2712.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	7.60097977092047	7.55722700508491	7.42057990071482	7.24587276490355	7.63431314099853	7.34605228445268	-0.153255501910068	0.530978699035008	0.851363932161699
Merged-chr12-91666817-4	chr12	91666301	91667301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-76314.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	5.82613249414727	5.91442799331023	5.78446405815892	5.49374078114636	5.43314779415349	5.58027016755053	-0.644789539969168	0.0395203386946905	0.246988759359156
Merged-chr15-90216329-3	chr15	90215825	90216825	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7986.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	2.5226786345216	2.662923891228	2.48478598689783	2.63985030554285	2.38296471812362	2.6871208629572	0.0639708685803192	0.936570607044465	1
Merged-chr15-78984061-2	chr15	78983561	78984561	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	1005.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	3.76276220917565	3.64332939553451	4.00603255031834	4.12162940426484	3.89547985165354	4.07431802304103	0.702059883377269	0.179604816954034	0.56110368604883
Merged-chr13-105310947-8	chr13	105310445	105311445	+	892.2177730000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16460.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	5.35163243709072	5.28902221477886	5.4447855961442	4.91458527728363	5.30404555384027	5.56108132131537	-0.157813260900278	0.675750416110594	0.912305923925221
Merged-chr9-44569750-4	chr9	44569259	44570259	+	708.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35133.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	5.60225971172041	5.21092632061472	5.73499101338743	5.81404244746542	6.0111875605031	5.96327747130305	0.745843166721679	0.0269884386471823	0.195581143542205
Merged-chr16-11054603-3	chr16	11054096	11055096	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11702.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	4.15600844010749	3.60855931792657	3.92106312184557	4.29385307691246	3.7874404463041	4.26996831979686	0.628471878985129	0.266603952651989	0.664166899200562
Merged-chr19-37955638-4	chr19	37955117	37956117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 22 of 53)	intron (NM_001302140, intron 22 of 53)	87960.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.53363559841654	4.94461991775764	5.58827936049842	5.53995333973188	5.37612445458262	5.30245431385977	0.0604263795023697	0.875431244029392	0.971044230529863
Merged-chr9-45406286-4	chr9	45405844	45406844	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007503, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	267.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	7.06783119128962	7.01232948341273	7.06305644707823	6.57940784055558	6.91520340847464	6.56387823815758	-0.521494067146594	0.0472411296973456	0.275307460418597
Merged-chr9-121313773-4	chr9	121313271	121314271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	RMER17C|LTR|ERVK	16269.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	7.82795593452188	7.61630665125151	7.30594534213194	7.50138102032366	7.64254042066543	7.38535996315276	-0.132134656697241	0.603897059369535	0.882879144619525
Merged-chr6-113666763-2	chr6	113666263	113667263	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	RMER4A|LTR|ERVK	28296.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	3.44392700693301	3.30208519324752	3.59002468627428	3.44566916818462	3.33901125214871	3.79977845894862	0.332880015579209	0.585890419507373	0.875147049575346
Merged-chr12-99966480-1	chr12	99965980	99966980	+	622.0	f0_balb.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	1981.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.43217111895105	7.87130945052709	7.69183541746016	7.63542556580852	7.81958013365296	7.48859844760863	-0.0253958795370923	0.919206839601133	0.981979004859879
Merged-chr14-19972616-4	chr14	19972133	19973133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	GA-rich|Low_complexity|Low_complexity	4060.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.19980529714229	6.07535988843304	5.56376222066203	5.91727248159303	6.07179127391256	5.50000517747592	-0.212156925409735	0.558130366591629	0.864515563271027
Merged-chr5-32195564-3	chr5	32195005	32196005	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37203.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	5.37961840746626	5.2684112407552	5.81122544315446	5.66959749284785	5.63805260608544	5.72727531077411	0.345595942839597	0.319031054060812	0.71299998254265
Merged-chr9-40501658-4	chr9	40501165	40502165	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	29718.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.21458540078173	2.91110267845683	3.14588401387692	2.74517497345059	2.88182736143311	3.04664252368464	-0.952456304424569	0.182364863245042	0.565168741513405
Merged-chr18-15201716-4	chr18	15201230	15202230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50284.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	3.80992293885648	4.0263397292366	3.99152874466057	4.13816108225465	3.98611440705125	4.24306016957257	0.513451357885839	0.302223970300695	0.698958713820873
Merged-chr4-5692448-4	chr4	5691962	5692962	+	900.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	MMERVK9C_I-int|LTR|ERVK	-31850.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	2.98233788284609	2.92469429320467	2.54269697001219	2.785726618032	2.5959262675476	2.94230839568824	-0.261580131722259	0.747268850959639	0.936600911319824
Merged-chr19-28777983-4	chr19	28777504	28778504	+	969.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-57162.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	5.18890706303427	5.2554482352127	5.47378248293402	5.21348137468692	5.09552611733197	5.36657658712827	-0.168032022785438	0.638085336807942	0.897380718500389
Merged-chr17-34636541-1	chr17	34636041	34637041	+	753.5	f1_balb.idr	Intergenic	Intergenic	6855.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	5.88522836049935	5.92418903390607	6.02717513251275	6.70756223099755	6.61153996359954	6.64352282978927	1.18091360169241	1.39336947122451e-05	0.000533545729229861
Merged-chr10-30751830-4	chr10	30751347	30752347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	L2|LINE|L2	51479.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.32919289827712	5.25555768328336	5.34799046674686	5.28986421165891	5.11915217553546	5.41087859603911	-0.0824740293278547	0.813136606336106	0.955933854959943
Merged-chr16-22121864-2	chr16	22121364	22122364	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	41435.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	5.28334086154655	5.3327356534567	5.02569229139989	5.50951595580481	5.39261946305898	4.97552503909852	0.186489624935461	0.62355096116556	0.891454389482559
Merged-chr19-29504529-2	chr19	29504029	29505029	+	972.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015567, exon 4 of 4)	non-coding (NR_015567, exon 4 of 4)	17458.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.20697457917505	2.78823576660173	3.05071018214784	3.14322260423004	3.14396348724343	3.18219663374144	0.562329107710192	0.416531661092121	0.787466577060259
Merged-chr3-51332309-2	chr3	51331809	51332809	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	B1_Mur4|SINE|Alu	8335.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	5.46755895841353	5.33963699448084	5.15021847117926	5.07730309184059	5.29172614878625	4.99702528918935	-0.391318206632976	0.286604786889827	0.6838474208565
Merged-chr10-81428603-2	chr10	81428103	81429103	+	838.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1430.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	2.99806432589344	3.19159748492964	3.18624882149871	2.99280540688002	3.19133901555117	3.52054214810816	0.499169924147041	0.460141226005504	0.814270337828624
Merged-chr16-49504005-4	chr16	49503504	49504504	+	845.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195290.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	3.66193820391939	3.36106515552316	3.4050395063016	3.59520465254822	3.3450358701424	3.83925607587341	0.409430397742466	0.503786438198411	0.837214289667465
Merged-chr5-117418971-2	chr5	117418471	117419471	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	4969.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.6586211548397	4.41239950067396	4.77514341312827	5.18211020433711	5.42768852043573	5.31918271334922	1.537426808827	8.51157436996405e-05	0.00247980070089625
Merged-chr2-167380809-3	chr2	167380319	167381319	+	712.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31641.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.73663017627937	4.76823091089037	4.7952251187653	4.71228819063629	4.72896867844872	4.66534104922593	-0.139743628491013	0.723238647131387	0.929000340406704
Merged-chr12-81859899-4	chr12	81859394	81860394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018814)	promoter-TSS (NM_018814)	-136.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	5.39742193394244	5.01547384680477	5.06610586914653	5.45307830675973	4.58999287104736	4.90905518521114	-0.282003778647945	0.529901971486069	0.85106707928144
Merged-chr16-50432397-4	chr16	50431895	50432895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347240)	promoter-TSS (NM_001347240)	-6.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	7.33542697079696	7.18831128395889	7.15786038339841	7.26926559150485	7.01290338386193	6.80854715854973	-0.27334731927763	0.288653858431528	0.68612338968242
Merged-chr2-157201108-4	chr2	157200594	157201594	+	881.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011249, intron 1 of 21)	Lx9|LINE|L1	3440.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	6.90589572038157	7.06645542193959	7.04223910290973	7.26505368845156	7.37801656873201	7.28357698751491	0.461281105933576	0.050152694508516	0.285159854855906
Merged-chr4-147520250-2	chr4	147519750	147520750	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33027.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.16330672937399	3.67537622837665	3.59532982426225	3.57783455775466	3.64402440654344	3.71677701520345	0.519223234442122	0.399916455300495	0.776248940201881
Merged-chr8-108693470-2	chr8	108692970	108693970	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21174.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.57949791450501	5.69830083058009	5.80887944732221	5.40774262763352	5.28541799975393	5.4160815639814	-0.623251507553216	0.0574417448502445	0.309299987413392
Merged-chr17-57342465-6	chr17	57341951	57342951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16235.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	7.08968279324434	6.6936020210186	6.91914697696756	7.32783339582003	7.48226068414353	7.47536962350019	0.779742105607862	0.00202091509437018	0.0311978299021065
Merged-chr7-116328815-2	chr7	116328315	116329315	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5375.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	3.77100873477184	4.03742673700659	4.16638501851634	3.89419779681974	4.04732526596198	4.18978692849912	0.146923705832473	0.774352498254577	0.944450802890077
Merged-chr17-67234266-2	chr17	67233766	67234766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	L1M2|LINE|L1	120193.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.0436224782954	2.84036321918853	2.99722171604943	3.20783292389644	2.90428094856452	3.1292761781677	0.552728937130301	0.421297331137796	0.790226764066497
Merged-chr18-80200660-4	chr18	80200178	80201178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199197)	promoter-TSS (NM_199197)	-59.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	6.78536439509706	7.06486544692757	7.04456199149191	6.9384982450755	7.05563114119604	7.02415434155535	0.0597449093552474	0.810955210691524	0.955096593239846
Merged-chr3-101596922-3	chr3	101596417	101597417	+	829.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7790.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.66588256031778	7.8896561783273	7.55471854960964	7.51794782448059	7.86208674638929	7.45635383794192	-0.119070505323039	0.635339177791914	0.896470397811433
Merged-chr10-34171328-2	chr10	34170828	34171828	+	790.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	36223.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.62737338453016	6.66037977393507	6.55534760481264	6.63741805068958	6.47287763895101	6.58003960652703	-0.0905486637665932	0.726123622341089	0.929743505822386
Merged-chr12-108180348-4	chr12	108179865	108180865	+	928.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009832, intron 1 of 11)	intron (NM_009832, intron 1 of 11)	627.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	7.77006564733457	8.25856970660946	7.74849297749813	8.11888303641672	8.17718470021205	7.89880690647885	0.168652954264551	0.50803078314204	0.839550861029232
Merged-chr6-116107683-2	chr6	116107183	116108183	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85691.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.2445711341678	5.12073101234775	5.25276822440085	5.11569352582977	4.8546109578243	5.12315336608188	-0.371265599820213	0.312570238904867	0.707190484237326
Merged-chr3-146653792-4	chr3	146653298	146654298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2481.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	5.70615579637318	5.52294083741183	5.37159641528091	5.58972367432879	5.27177269076585	5.23707018879439	-0.326673875254213	0.352891713646935	0.740356213013919
Merged-chr12-79639276-2	chr12	79638776	79639776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	285457.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.03943495246974	3.83119025517906	4.30099558282351	4.63925063995689	4.31775208717678	4.53476333045331	1.19219546399576	0.0147110906125895	0.130847720758135
Merged-chr2-180273604-4	chr2	180273104	180274104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-139.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	6.31629233724265	6.12164408599435	6.07322442095143	6.41160183784974	5.9995272842256	5.91805941992609	-0.0784256821269411	0.801432904183506	0.952964961220131
Merged-chr12-85478416-3	chr12	85477910	85478910	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	4520.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.89642689451836	3.19302269320921	3.52912654699041	3.2063129495121	3.07351287033779	3.1346645323994	-1.74155344351204	0.0112649804337485	0.109386917018479
Merged-chr9-108560399-4	chr9	108559912	108560912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011830)	promoter-TSS (NM_011830)	-89.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	6.99777867472251	6.99677023663264	6.92177024733671	6.88665503803842	7.23772382405037	7.04835730610794	0.147244077233634	0.557747850861784	0.864328451488262
Merged-chr15-97195896-4	chr15	97195405	97196405	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28661.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	4.19065254320325	4.14944213616865	4.17994445458507	3.99374006998296	4.23484343774837	4.24765714742179	-0.0240947640135368	0.959330808239992	0.990174309444982
Merged-chr11-118353067-1	chr11	118352567	118353567	+	542.0	f1_balb.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	2344.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	4.28401023598298	4.25628616229453	4.94204228835868	3.78682425151491	4.05232918832863	4.15922699627277	-1.39844782254437	0.00928526733927188	0.0955843776773641
Merged-chr5-88764062-2	chr5	88763562	88764562	+	730.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	-951.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	4.43746372174775	4.39257370933029	4.70128659265797	4.70049780235013	4.78325694173714	4.48106174187795	0.395317426329185	0.358307041302971	0.744612194277637
Merged-chr2-36049351-4	chr2	36048842	36049842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029309)	promoter-TSS (NM_029309)	-50.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	5.91211971714133	6.20476583099323	6.00922862221686	6.05796986078461	6.20229098302171	5.90191062406558	0.0319504920379608	0.915990476954861	0.981201223155309
Merged-chr18-76931226-2	chr18	76930726	76931726	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025409, intron 1 of 2)	intron (NM_025409, intron 1 of 2)	1199.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	3.83767807722979	3.66535600982152	3.95151529480899	3.89207048504088	3.94372750325651	4.15563780538343	0.555469402094865	0.284266987639778	0.681994389352597
Merged-chr5-115512470-2	chr5	115511968	115512968	+	961.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	5792.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.80349283037783	5.83890860703979	6.13809823147058	5.052844953528	4.98143560191295	5.45269857230555	-1.46401716686987	4.15811872950555e-05	0.00135310419728079
Merged-chr3-88402632-2	chr3	88402132	88403132	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	7765.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	3.94555662628245	3.78162146488715	4.06109368757163	3.63536012756757	3.56243508223583	3.52416247838602	-1.18147603015145	0.0320319772733048	0.217275353791241
Merged-chr17-24645238-4	chr17	24644818	24645818	+	752.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023449)	promoter-TSS (NM_023449)	-361.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	4.01176760323713	4.09600540116983	3.96015641252496	4.04627190088637	3.73756104622037	4.07735290989392	-0.219609218808433	0.667045626826199	0.908479131139281
Merged-chr2-24934838-2	chr2	24934315	24935315	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_178408, intron 1 of 7)	CpG	466.0	NR_027876	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	6.46243135987917	6.4597634104305	6.61211678468305	6.39005113537342	6.40206506315281	6.58946565356193	-0.0823625787943727	0.757636397745493	0.939883186830738
Merged-chr2-60848683-4	chr2	60848175	60849175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	32763.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.81795764541003	4.67204235407242	4.51528647529451	4.67567959892013	4.72091505801403	4.62564080606557	-0.0105213394483352	0.979610132857262	0.995291646028389
Merged-chr4-106385470-1	chr4	106384970	106385970	+	807.0	f0_balb.idr	exon (NM_183225, exon 32 of 68)	exon (NM_183225, exon 32 of 68)	69257.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	3.31746147901746	3.02189006398872	3.32972263672864	2.76730791480664	2.75954488915569	2.94758655418496	-2.00388835837425	0.0064865008747034	0.0739354472304548
Merged-chr13-94794282-4	chr13	94793763	94794763	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	5320.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	3.36241617656708	3.2238488958716	3.41803510128116	3.37127432561331	3.42559582470988	3.20183129221174	0.0344901240702488	0.955247121533957	0.98974202431386
Merged-chr15-98507929-2	chr15	98507429	98508429	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	10455.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	2.54691432314778	2.44355881253518	2.70004191960685	2.74804806036845	2.60199655504742	2.51901288085679	0.368844644781653	0.637955218029683	1
Merged-chr9-21162776-2	chr9	21162276	21163276	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	2.97199027914723	2.74638572144839	2.79658320431332	2.91802862385914	2.75292842622379	2.93160105622108	0.111319389567506	0.876449646452108	0.971334744650699
Merged-chr12-79018128-4	chr12	79017633	79018633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10856.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	6.97530518513957	6.79077905184314	7.07188154500355	6.23408259936738	6.56994231751972	6.36073005211193	-0.855989666470079	0.00189842991868404	0.0296952237597346
Merged-chr3-28027104-4	chr3	28026580	28027580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	intron (NM_008875, intron 3 of 25)	42909.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.92473122988726	5.86209430007157	6.12372706112544	6.29879107566456	6.31806832868037	6.11957313420845	0.493441075013291	0.0890107668701934	0.396318915332569
Merged-chr6-31402499-2	chr6	31401999	31402999	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 1 of 17)	MT-int|LTR|ERVL-MaLR	3671.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	2.93151012566883	2.85218548528554	2.90941862211302	2.92466806284754	2.71087914332194	3.15395189329966	0.180134715065523	0.802111000935572	0.953161751100363
Merged-chr11-69761416-2	chr11	69760916	69761916	+	837.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_019871, intron 1 of 1)	intron (NM_019871, intron 1 of 1)	428.0	NM_019871	56293.0	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	3.51156745725819	3.63154869337289	3.3249658387104	3.53497623867997	3.56424091762034	3.45699174369612	0.0707192119866452	0.904193592404386	0.978058088981126
Merged-chr6-124669106-2	chr6	124668606	124669606	+	750.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	ID_B1|SINE|B4	6002.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	2.51827040473436	2.47610226814418	2.65842862418294	2.56677749865915	2.20901146163813	2.41481850133659	-0.910691806154278	0.288361977672228	1
Merged-chr2-21187503-3	chr2	21187008	21188008	+	998.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	17857.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.97061920716799	4.78951633467449	5.02945870009992	4.66176597437441	4.81091523111285	5.09308554344854	-0.156003893129346	0.69700259846479	0.919795142860633
Merged-chr8-35109911-2	chr8	35109468	35110468	+	768.791626	f0_balb.idr|f1_balb.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-144278.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.46039575479761	4.5352184382339	4.69294185590047	4.17492726134625	3.92011938044684	4.27541078125268	-1.18475142824876	0.0115233947229603	0.111153294568845
Merged-chr9-21924208-4	chr9	21923715	21924715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3073.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	5.92559315388822	6.0204015533469	5.79810765225549	5.73117326591492	5.95816398244192	6.0044043886533	-0.0399373318289122	0.895980497372985	0.97569173539301
Merged-chr5-139732999-4	chr5	139732517	139733517	+	882.1083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	3316.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.97203477957644	4.75937935119088	4.75873619930442	5.73526458501029	5.63590046936133	5.55089139625746	1.6301844833524	6.2411727683135e-06	0.000267550566708382
Merged-chr14-66221917-2	chr14	66221417	66222417	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	B4|SINE|B4	-8093.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	3.635394754124	3.68297276574043	3.82308245750528	3.49198459963159	3.46707285955675	3.53463983775468	-0.76506637315864	0.171476653032739	0.549560896986326
Merged-chr6-113000920-6	chr6	113000404	113001404	+	873.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45398.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	3.51042867238179	3.2402838495515	3.29870377935089	3.28232681753109	3.06685425823932	3.53218945889248	-0.223944712866113	0.729786335533687	0.930635866770147
Merged-chr18-4302857-4	chr18	4302356	4303356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50097.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.14812906976221	7.25067402799173	6.47441431432475	7.18196484992547	7.15426802754863	6.73869617831136	0.050618093564635	0.87272214619078	0.970272084673997
Merged-chr1-171000196-2	chr1	170999696	171000696	+	704.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18730.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	5.19287633439134	5.1116091933723	5.35921439733875	5.04250301820595	5.145596396635	5.07246676385162	-0.26138652709186	0.467791109441833	0.81815434317961
Merged-chr6-113629374-2	chr6	113628874	113629874	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009507, intron 2 of 2)	intron (NM_009507, intron 2 of 2)	5353.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	5.19871364266903	5.49190033872524	5.3963696773055	5.29349292673653	5.51464209298386	5.39929589389304	0.082390283815725	0.812088160610134	0.955468494621222
Merged-chr19-53453389-3	chr19	53452896	53453896	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	11400.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	5.48145973176824	5.63844451442339	5.3100294488458	4.26935959356024	3.98759404994683	4.03216388853657	-3.44571739713415	5.27710651260971e-13	1.06577057937191e-10
Merged-chr13-115136968-4	chr13	115136479	115137479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35015.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	4.54547375113822	4.63464223603113	4.67475019352534	4.5602361829131	4.77839394798723	4.77827573551253	0.223012017576048	0.585657757188823	0.875094917308664
Merged-chr1-36087886-3	chr1	36087388	36088388	+	617.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	19488.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.12406314840517	5.95258457327558	6.07312695936968	5.85913582661283	5.63006709020453	5.51882752035981	-0.655329005126485	0.0358272881295386	0.232574870689347
Merged-chr2-5702510-4	chr2	5702024	5703024	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	12238.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.02793590356253	5.22811610847413	4.7856140209463	5.06034274687219	4.92927418210675	4.81203937260663	-0.207839321482375	0.598170423727985	0.880655214435438
Merged-chr10-117716508-2	chr10	117716008	117717008	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5750.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	5.10041527398324	4.93609372501221	5.20120656388139	5.0223742359518	5.06167579536499	4.84395347983146	-0.190420166376852	0.613572027589012	0.887300906025089
Merged-chr7-67440854-4	chr7	67440372	67441372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68014.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.59702499618851	4.75300679268926	4.43540280969857	4.54946142087991	4.28800453248656	4.66915703240824	-0.265874014445657	0.548016140634195	0.859456555901125
Merged-chr13-54580982-2	chr13	54580482	54581482	+	607.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019968, exon 4 of 4)	3' UTR (NM_019968, exon 4 of 4)	5969.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	2.0530014405986	2.13797101039814	2.14999357796092	2.22727855218771	2.09976353874934	2.41875636392028	0.976433212334641	0.276495034645976	1
Merged-chr18-66438884-1	chr18	66438384	66439384	+	544.0	f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-19720.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.15134837421437	3.79562305359035	3.56912392165548	3.89502105050988	3.94607957896884	4.11378390290592	0.346772707090344	0.536280091536079	0.85392789486322
Merged-chr10-118818146-4	chr10	118817654	118818654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50749.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.42328804202642	5.62950887614043	5.95378381467127	5.88881421611112	6.11973246678154	5.55211539839281	-0.285989261123805	0.448869985435159	0.807454029128485
Merged-chr9-16307552-3	chr9	16307038	16308038	+	908.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	70693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.91668687709165	3.27321559314955	3.18847946434136	3.05955929071307	2.73111251445316	2.70050616051392	-1.39363176756022	0.0694462063784599	0.344832910929395
Merged-chr10-98619336-4	chr10	98618832	98619832	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-267465.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	2.7340379751216	2.85624458190789	2.82556840133532	2.6977550920678	2.69475399764392	2.64818052822389	-0.663374609577507	0.366229988349574	1
Merged-chr11-59228217-4	chr11	59227713	59228713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	-51.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	9.35451656853413	9.39716734169453	8.86111720174114	9.09077608846321	9.2488552786251	8.76739439409524	-0.238710551051696	0.341786784724516	0.731017930321085
Merged-chr6-42354351-5	chr6	42353845	42354845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	4517.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.48546799426514	5.54309575982349	6.08210228634274	5.88629097308398	5.80403909251056	5.73215569345535	-0.501843335263761	0.17755429737122	0.558603220495481
Merged-chr7-43530554-4	chr7	43530051	43531051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111058, intron 3 of 6)	intron (NM_001111058, intron 3 of 6)	2620.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	5.728858300027	5.64786544503938	5.89394393557088	5.34044627315872	5.38703603294438	5.69146614719731	-0.529107964506067	0.11164723682836	0.446313714155454
Merged-chr17-7869283-4	chr17	7868792	7869792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56708.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	4.35829247872767	3.7632759028774	4.15764295657671	3.96364113407667	3.76052937903243	4.79058786639548	0.361996951067778	0.555314206019028	0.863191483122339
Merged-chr9-45102826-3	chr9	45102311	45103311	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15065.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	4.55189138102591	4.57443853067507	4.54779544999959	3.59935117086775	3.34829037477524	3.66460652141392	-3.54967050541641	5.71451015675813e-09	5.48434787916414e-07
Merged-chr5-137785261-3	chr5	137784748	137785748	+	926.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	1453.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	5.0926400894418	4.94319210617427	5.08236604349498	5.09667144797702	5.10146505113357	4.93226321100568	0.0295604562110839	0.936068295561317	0.986014061025137
Merged-chr5-146750022-4	chr5	146749540	146750540	+	989.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 6 of 8)	intron (NM_011669, intron 6 of 8)	44916.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.78722848411146	4.45465783666996	4.71827445477563	4.90429043554808	4.86410529318389	4.66355091818648	0.375639854074685	0.363707949589672	0.749321188432902
Merged-chr8-22807389-5	chr8	22806857	22807857	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1703.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	6.44535559420288	6.18666879727929	6.52962463891173	6.52375699992095	7.31204609926282	6.94185373746804	0.91785564232833	0.00372683139365797	0.0493714673783621
Merged-chr8-45975338-4	chr8	45974837	45975837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138668)	promoter-TSS (NM_138668)	-85.0	NM_001033148	69479.0	Mm.158282	NM_001033148	ENSMUSG00000071103	1700029J07Rik	-	RIKEN cDNA 1700029J07 gene	protein-coding	7.80360674595011	8.28907058979487	7.74713814843773	7.96875913319378	8.33612892847451	7.80351091748868	0.121774277806422	0.658290790971431	0.904992195604343
Merged-chr17-67355373-2	chr17	67354873	67355873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-882.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.17641884667215	6.43302860767872	6.16807543806773	6.04298461728123	6.25245493566639	5.61179263559086	-0.431996522045653	0.190462550971053	0.576836570619471
Merged-chr11-60900667-3	chr11	60900200	60901200	+	752.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13092.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	3.68442660374256	3.42556846501783	3.44300054740654	3.53631801948017	3.48648014205496	3.45797764058508	-0.116744569383212	0.840803252451327	0.962819298477451
Merged-chr12-110704235-2	chr12	110703735	110704735	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7840.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	2.82668814088151	2.62187465005182	2.79732790273152	2.85983757985616	2.63869325468285	2.93022759463542	0.309540507685189	0.676150224763361	0.912421384593547
Merged-chr11-20205253-2	chr11	20204753	20205753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	RSINE1|SINE|B4	3841.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	5.72374426894228	5.81494834735464	5.57212825737373	5.87020169082726	5.83387517867357	5.87467627665348	0.255480317424971	0.40615902405167	0.780572802875355
Merged-chr13-23445861-4	chr13	23445372	23446372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-14855.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	6.25590401829245	6.49989957954553	6.09178762709895	6.43345755851152	6.64171040619502	6.40579341870199	0.326273497123262	0.259218507755661	0.656825376873982
Merged-chr18-70436413-4	chr18	70435898	70436898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36056.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	6.27166055498389	6.43885810218135	6.149188942602	6.80214819312427	7.00672540323144	6.79940997171351	0.918154356166916	0.000703854590147169	0.0137235557934922
Merged-chr14-122983358-4	chr14	122982850	122983850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	-67.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	6.5805674640776	6.87472177688312	6.5656462690411	6.56949962028174	6.58851617033693	6.25599895279928	-0.314502012756126	0.264535603792572	0.662457595340306
Merged-chr13-59853787-2	chr13	59853274	59854274	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30627.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	3.01505383772491	3.30570137166114	3.3718504776583	3.35164621940829	3.89507255407797	3.55481865118289	1.47279378979759	0.0256954157584723	0.190033255215622
Merged-chr9-48548451-4	chr9	48547953	48548953	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC2|LINE|L1	53110.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	5.36628785120363	5.79190368545337	5.79048610370656	5.6129417854111	5.9873851430802	5.55658193956224	0.154456419301065	0.661820669386987	0.906495637422278
Merged-chr17-34296203-4	chr17	34295705	34296705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8434.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	7.84786196391366	7.81030845892769	7.45673459053025	7.80064636158929	8.07176733826562	7.40156803604169	0.107487332399973	0.69579942561412	0.919291538728398
Merged-chr10-87740716-1	chr10	87740216	87741216	+	661.0	f0_balb.idr	Intergenic	Intergenic	-117549.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.99944752154921	2.97333003330739	3.03531324165536	3.01633611689743	2.72439972431105	2.80096896135598	-0.730038525169571	0.304357439465121	0.700883185755923
Merged-chr8-124948568-2	chr8	124948067	124949067	+	716.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_053207, exon 1 of 5)	exon (NM_053207, exon 1 of 5)	687.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	4.12239800647759	4.23328495425993	4.47981864419863	4.24244336110569	4.11177584313188	4.25351252965778	-0.213405621628195	0.650125751235969	0.902542060978069
Merged-chr4-58511803-4	chr4	58511270	58512270	+	642.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	L1MB2|LINE|L1	-12367.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.21376753968862	4.19177680464447	4.15949415555435	4.36269140495369	4.16077278344231	4.1322038301823	0.0927272510013573	0.84204281395585	0.963002495523594
Merged-chr10-117861073-4	chr10	117860580	117861580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15106.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	8.68798515782417	8.75268723024668	8.09358485108238	8.26570217100759	8.8955672348611	8.15650151347344	-0.0808291773226552	0.78847785525667	0.948954880993192
Merged-chr14-65101179-2	chr14	65100679	65101679	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3073.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.41283365103374	5.11586207264283	5.44302550077021	5.41806080320692	5.59783645946397	5.83916671403473	0.569321945614095	0.106436009025885	0.435585650158659
Merged-chr12-113130311-4	chr12	113129795	113130795	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 11 of 19)	intron (NM_001346696, intron 11 of 19)	-9941.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	5.7850201686889	5.51950915670241	5.74556776794685	5.77628076340298	5.83347494194827	5.80726817520829	0.22159570546846	0.478584223337075	0.823834402333981
Merged-chr7-123354541-4	chr7	123354025	123355025	+	969.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	15390.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.55259517938412	4.80811058929675	4.5602765168202	4.70366262425541	4.6004037576619	4.82284866126523	0.124310076918406	0.76496662075307	0.942108083032718
Merged-chr8-120115350-2	chr8	120114850	120115850	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	1198.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	5.08379135203836	5.42428787661663	4.9461914930705	5.1775238665067	5.24039995882565	4.81016448345366	-0.158123090978261	0.693520374250951	0.918960880648635
Merged-chr3-126627631-2	chr3	126627131	126628131	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	30680.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.44265879754924	6.33805099271236	6.05132890639052	5.92240684374637	5.860295919684	5.64108444105737	-0.816134633796916	0.00802798974137248	0.0863037901140799
Merged-chr13-33931329-2	chr13	33930829	33931829	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009254, intron 2 of 6)	intron (NM_009254, intron 2 of 6)	-4703.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	5.42145765680802	5.88628800938338	5.34459388601877	5.40134723168008	5.61833357990331	5.44062368523708	-0.169961744599809	0.638517036030396	0.897576536084903
Merged-chr4-120868985-3	chr4	120868482	120869482	+	764.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182929, intron 1 of 7)	L2b|LINE|L2	14183.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	3.83648414598104	3.87802615511281	3.55677964500974	3.68153948958048	3.2979970861568	3.68370391006761	-0.720296424073914	0.22536753022316	0.620200471451538
Merged-chr5-24029267-2	chr5	24028767	24029767	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	1045.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.23109970991754	4.18284886998556	4.11310206672525	3.96759255059135	4.04561060144	3.88159465605359	-0.602728645308474	0.216291599514988	0.609736247697899
Merged-chr2-132599899-2	chr2	132599399	132600399	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	B3|SINE|B2	1703.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	7.68666150089373	7.77909723056068	7.05468650106978	6.90754976529134	7.09977694842237	7.07179550374226	-0.780525284429237	0.00606839427931545	0.0703355552574565
Merged-chr10-88681153-4	chr10	88680636	88681636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 1 of 5)	B4A|SINE|B4	1887.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	7.59149866633686	7.4910098463064	6.9443617329809	7.63238614733409	7.65760144312435	7.29971280210101	0.237246604411191	0.398236591479469	0.774939402456313
Merged-chr13-21168087-4	chr13	21167562	21168562	+	868.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11869.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.36958104241173	4.82408940708165	4.60969013720523	4.89548070687099	4.92266785950086	4.90933224426234	0.665344980337139	0.111533254868719	0.44610871740816
Merged-chr17-73946067-2	chr17	73945567	73946567	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	4129.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.74339726013155	5.73878232904324	5.6524380359304	6.1569893155439	5.93344522092469	5.74306249453611	0.438178335311354	0.162480939257517	0.535901141340552
Merged-chr17-35262986-4	chr17	35262483	35263483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010380)	promoter-TSS (NM_010380)	-111.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	9.44486551003234	9.26090077973661	8.93198773377055	8.78913101510367	9.13700099988069	8.61543960970361	-0.493113895058008	0.049352371156871	0.282369742702326
Merged-chr5-3421060-4	chr5	3420538	3421538	+	953.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	77145.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.37166235568936	7.3025466813878	7.18350513797654	7.29670632421632	7.4737246462516	7.39041039825809	0.146108749175505	0.529284521645649	0.850847288056475
Merged-chr5-117904164-4	chr5	117903651	117904651	+	942.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 8 of 27)	intron (NM_008712, intron 8 of 27)	37312.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	2.74868538264412	2.57543026325005	2.84280842960221	2.96458544357599	2.70811187699748	2.72983168902407	0.431467827513032	0.564168816204155	0.866201054824694
Merged-chr10-62486064-4	chr10	62485584	62486584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	514.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	8.21005614336245	8.70352986434044	8.30576841391833	8.22790285479085	8.48766682151178	8.37340449467257	-0.0838873806600164	0.727714725229921	0.930204882969987
Merged-chr1-127135938-4	chr1	127135430	127136430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69056.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.25902975023414	4.96645607719109	5.55836841030346	4.79766432938302	4.89476938444826	5.07237854233854	-0.738629546685849	0.0641774992844172	0.330062510690264
Merged-chr16-36661785-5	chr16	36661247	36662247	+	850.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	4330.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.81945499752799	4.44846063749202	4.43180987922819	4.56012758816697	4.56715567876778	4.85724915334444	0.177918206043172	0.686396339758827	0.916737558605038
Merged-chr10-71352306-3	chr10	71351874	71352874	+	780.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	4611.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	2.8612739462216	3.23072419676845	3.03108255246777	3.17868013022295	2.77831394741299	2.85659138499006	-0.47757651414823	0.517771436296554	0.844734005892866
Merged-chr16-32087811-4	chr16	32087312	32088312	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024464, intron 3 of 5)	intron (NM_024464, intron 3 of 5)	-8470.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	4.17636508050399	4.11218469522341	4.0003565658248	4.01847052821957	3.93874196834553	4.02030875712742	-0.33233337152133	0.493843457352625	0.831671252465305
Merged-chr4-148628001-2	chr4	148627503	148628503	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1007.0	NM_001003899	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	3.55868591812723	3.61030214600723	3.40667558933663	3.59296676233207	3.4416109882984	3.59011105945564	0.020278985484647	0.971799640323253	0.993783614343214
Merged-chr6-120472741-3	chr6	120472332	120473332	+	792.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 2 of 12)	intron (NM_008359, intron 2 of 12)	9635.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.34733672396257	6.32345977419822	6.86442457190588	6.17396589975386	6.51809836519295	6.61841907677899	-0.125191710741089	0.690307917461805	0.917799022980422
Merged-chr10-44691745-4	chr10	44691230	44692230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-232982.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.78968106469761	8.18292081213212	7.84873159104685	7.43359697044578	7.83680631516354	7.48032362078699	-0.504901407401644	0.0492880503287802	0.282176970672708
Merged-chr2-60868608-2	chr2	60868108	60869108	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	12830.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.85808608866803	3.78610160998916	3.73952208353064	3.8695202596597	3.83659246550773	3.86151998047901	0.181218749518134	0.724927987137335	0.929475409375828
Merged-chr9-21136590-4	chr9	21136120	21137120	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5345.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	7.04214201155282	7.04540255832163	6.88406271240141	7.30318199744136	7.6519475745256	6.97233397331288	0.532833513521448	0.0559614282710069	0.304581274435763
Merged-chr11-90492279-4	chr11	90491785	90492785	+	921.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101368.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	4.65397574311138	4.73196744269165	4.69138753274821	4.64073733438865	5.25497422165813	4.5434891753789	0.404996585081486	0.370944824604105	0.755139623370806
Merged-chr14-105898079-1	chr14	105897579	105898579	+	608.0	f0_balb.idr	Intergenic	Intergenic	-1260.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	3.90537097182212	3.68574933557168	3.56019402884882	3.42568846995573	3.11298954351381	3.4050136984217	-1.57286432884432	0.0117987179669302	0.112875949560505
Merged-chr2-132114697-4	chr2	132114206	132115206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	30402.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	7.06152362104523	7.19439714684682	6.97095556949164	7.32818613616011	7.68899051990069	7.11183558162018	0.48759563835757	0.0698241797820992	0.345973343137552
Merged-chr1-61638907-4	chr1	61638427	61639427	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081050, exon 1 of 23)	5' UTR (NM_001081050, exon 1 of 23)	103.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	4.50388821972802	4.06144543974222	3.97806774501739	3.44737474424652	3.43744668039503	3.42745013281053	-2.64423650655346	1.49982408745161e-05	0.000567776900221446
Merged-chr6-91741116-4	chr6	91740601	91741601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 8 of 14)	intron (NM_009320, intron 8 of 14)	57034.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.05322836990554	4.76411751649197	4.71479762176576	4.65360766804945	4.47126244705006	4.70148689266203	-0.593105895033554	0.153297060665617	0.522147522365411
Merged-chr6-122602898-5	chr6	122602440	122603440	+	914.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	-496.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.04628542089275	7.18784714870113	7.01167495123353	7.62678279755133	7.82910275107353	7.09769163705223	0.70700766170667	0.0115243663138812	0.111153294568845
Merged-chr12-85468042-2	chr12	85467542	85468542	+	990.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5848.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.09965670770474	6.146454061105	5.68452158135084	5.44001853928137	5.65272063170134	5.6638325047711	-0.746495909721648	0.0232922267225155	0.178601128244509
Merged-chr12-3781633-4	chr12	3781125	3782125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-25355.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.00970118062441	6.06287506172347	6.06141090889414	6.38007510660433	6.49406437529503	5.67585608300037	0.341522568471669	0.316922609271587	0.710852534497944
Merged-chr7-4647500-4	chr7	4647029	4648029	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	11421.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	3.9031248621496	3.69850640471079	3.3148125715636	3.7548881748214	3.50426955939661	3.79001186210278	0.060786555691137	0.921456458392819	0.982542868764899
Merged-chr11-110464591-1	chr11	110464091	110465091	+	540.0	f0_c57.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-13924.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.13483768864393	4.12427830789066	4.10051813972952	4.52923851724441	4.27623269374381	4.39966278526609	0.761467334761196	0.0977954614105526	0.417064164942457
Merged-chr16-38562311-3	chr16	38561808	38562808	+	708.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	-506.0	NM_001205287	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	6.23996018214082	6.57227463360272	6.19878201854931	6.27109486711176	6.39809387472534	5.9841229493707	-0.19208568206862	0.529806085642868	0.851048470960073
Merged-chr8-104442427-4	chr8	104441923	104442923	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013380, intron 2 of 12)	intron (NM_001013380, intron 2 of 12)	624.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	6.16279501898762	6.29253196680117	6.24175816214578	6.24271936962616	5.79887918484204	6.13668474133726	-0.286376501820191	0.343772349977682	0.732572352000629
Merged-chr5-105902898-2	chr5	105902415	105903415	+	695.299988	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 5 of 9)	L1_Rod|LINE|L1	26347.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.06523232974203	3.01595052045107	3.14828789086393	3.09571457777048	3.0372210407247	3.43417125553551	0.50850237654867	0.443420176706095	0.803800173379074
Merged-chr16-32202826-4	chr16	32202317	32203317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23017.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	6.33632662472552	5.97888925125962	6.11816578916126	6.06386679285088	6.10165274911265	5.97390909697329	-0.17513916437635	0.55590776604517	0.863466091383778
Merged-chr4-129130307-4	chr4	129129821	129130821	+	726.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6678.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	2.38020922376961	2.27851978813375	2.19141512858286	2.53617872368864	2.41209009248828	2.53606247515465	1.32492707713635	0.124757130859082	1
Merged-chr17-72939678-4	chr17	72939181	72940181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	21376.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	5.12152089516262	5.04171069228392	5.04792127183119	4.95774818502308	4.83033536988199	5.24110903811432	-0.138000851800683	0.716749358572037	0.926809750393356
Merged-chr9-7839128-4	chr9	7838573	7839573	+	778.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2016.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	4.03168138131186	3.93293697761818	3.62439579439693	4.10500263251495	4.1374102717386	4.07414037871807	0.659148315751185	0.208305314486529	0.599165811939819
Merged-chr3-75553323-4	chr3	75552826	75553826	+	678.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019745, intron 1 of 7)	intron (NM_019745, intron 1 of 7)	3526.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	3.69993543162507	3.80924296871354	3.91780355450072	3.89481455860867	3.86002185386269	3.98626963735478	0.328939926603674	0.522194467643507	0.84749685799829
Merged-chr5-120578902-3	chr5	120578387	120579387	+	902.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9726.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	3.40084004234048	3.35827019421018	3.23430185628511	3.33986815187862	2.86021288834632	3.24864624179907	-0.709647234997882	0.302485060160763	0.699163223585565
Merged-chr6-129532730-4	chr6	129532249	129533249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020590)	promoter-TSS (NM_020590)	-443.0	NM_020590	57436.0	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	7.38168564087332	7.44701950998318	6.98774061191502	7.13246483429004	7.54668664200817	6.67359741128514	-0.167373691596949	0.597700168565404	0.880455475375358
Merged-chr17-71257341-3	chr17	71256837	71257837	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52683.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.98479326737794	6.92400510590717	6.50436203364077	4.51740782605368	4.47508292166131	4.8683416762068	-4.48826726981623	2.14103450370938e-28	8.09778177202955e-25
Merged-chr19-47448684-2	chr19	47448157	47449157	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	15754.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.61771434569184	3.83713146614796	4.05237321770757	3.77628360725121	3.57715515868631	3.5763465135145	-0.640565042777838	0.254089977596425	0.651179145391095
Merged-chr3-100488471-4	chr3	100487971	100488971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142952, intron 1 of 1)	CpG	721.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	5.67394673703642	5.89141897107114	5.34296777944757	6.16285466377652	6.32175030950963	6.1425454937503	0.946280610671927	0.00399920861613085	0.0519054984450188
Merged-chr15-59612809-1	chr15	59612309	59613309	+	542.0	f1_balb.idr	Intergenic	Intergenic	-35845.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.27791251725464	3.2269176319369	3.37808926913113	3.35798994611022	3.68725966300873	3.60992058136651	1.02937120237034	0.0875863007524753	0.392475680597338
Merged-chr17-63863861-4	chr17	63863328	63864328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037997)	promoter-TSS (NM_001037997)	-153.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	7.45162161006229	7.7695928219024	7.4538614784456	7.5612989623984	7.62770232324549	7.53132653553754	0.00510889101997097	0.982703530797765	0.996084390562607
Merged-chr6-88906941-4	chr6	88906451	88907451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 2 of 11)	intron (NM_011906, intron 2 of 11)	4700.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	3.57825570384775	3.05394945586464	3.606167565219	3.39782783006517	3.14244962340849	3.1181342213912	-0.815841282735314	0.233791801401106	0.630121355137759
Merged-chr5-135134706-4	chr5	135134217	135135217	+	870.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 15 of 16)	intron (NR_152882, intron 15 of 16)	-14994.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	3.93812875139636	4.13024530468583	4.26704724637957	4.15371994677378	4.28519196247951	3.84593995362826	0.0150743852131651	0.976511744843747	0.994723308989508
Merged-chr17-17871855-4	chr17	17871365	17872365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12074.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	6.91917751213012	6.86310747836029	7.20665486885121	6.86863234148211	7.2745484125664	7.28649591507092	0.242560561168086	0.368432846653743	0.753380524534667
Merged-chr11-70540106-4	chr11	70539635	70540635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008876)	promoter-TSS (NM_008876)	71.0	NM_001361935	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	6.49886841114553	6.46101135513375	6.38599924123771	6.37251098165059	6.44667716434668	5.93402776503392	-0.272105100204403	0.358266916909994	0.744602774931622
Merged-chr11-46437479-3	chr11	46436984	46437984	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001104556, intron 1 of 1)	CpG	523.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	7.73017009546733	8.28318735071609	7.57102705147495	7.72405251115531	7.75537639436119	7.53605829666177	-0.329461474548975	0.232639794110086	0.628944749946774
Merged-chr13-73508900-3	chr13	73508392	73509392	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-27855.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	2.63792333520723	2.56360723962235	2.7844956863809	2.64442285097999	2.42601817892908	2.67626542120348	-0.448329122370647	0.565407257799454	1
Merged-chr5-36563970-4	chr5	36563471	36564471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	18426.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	7.84311151805096	7.60720275824328	7.40911955444158	7.46879360278572	7.75625275241154	7.647310073901	-0.0101091970412929	0.967327405846286	0.992555129128888
Merged-chr5-22917430-3	chr5	22916979	22917979	+	963.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-170595.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	2.4665579192431	2.4419811483241	2.4931531037322	2.8801843962235	3.18509160108457	3.02244507595599	3.72307636850609	0.000107232981894732	0.00300830814480677
Merged-chr11-54617835-4	chr11	54617335	54618335	+	768.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 7 of 28)	MLT1A0|LTR|ERVL-MaLR	21689.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.05495948738127	3.83508833817067	4.17482551212982	3.90673995356968	4.38849167445247	4.19768857520069	0.46322837251386	0.367693635840144	0.752664322639836
Merged-chr10-68282632-4	chr10	68282133	68283133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3907.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	7.28952590557148	7.11239662681428	7.15776608816954	7.40991607277739	7.56558292719422	7.26411819418155	0.351169329233518	0.143146698135559	0.50502227934974
Merged-chr3-89349265-3	chr3	89348788	89349788	+	855.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029974)	TTS (NM_029974)	740.0	NM_001037722	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	3.39736481837632	3.33338095268407	3.31614518979161	3.11491641655623	3.14084698598194	3.33159956728546	-0.648417632196571	0.297743422434323	0.694512073724914
Merged-chr7-35063412-2	chr7	35062912	35063912	+	826.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-6846.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.39758201360559	3.60480415343987	4.00406096431129	3.40845494920419	3.30225969779134	3.60779450999327	-0.87426865471599	0.158582867309406	0.530400126017003
Merged-chr17-21536268-4	chr17	21535760	21536760	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131123)	promoter-TSS (NR_131123)	-382.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	5.63197077022533	5.80606490793884	5.69070717831304	6.06721116172917	6.14747921316657	5.75348733424503	0.528932096829096	0.092437129793936	0.404981153037862
Merged-chr11-76588248-4	chr11	76587729	76588729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10490.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.69862947149289	8.79685256909156	8.3444932634228	8.41524857757221	8.75924878737978	8.1967996972134	-0.202863353872358	0.427262658782692	0.794204865817398
Merged-chr17-36015909-3	chr17	36015413	36016413	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4647.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	4.20398476741421	4.43479594524589	4.05736448850139	3.75769705858093	3.66470466950043	3.8192668950089	-1.55608913715984	0.00277144829391826	0.0396304169072196
Merged-chr2-154656923-4	chr2	154656436	154657436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029362)	promoter-TSS (NM_029362)	-90.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	8.28000762006369	8.37268268800815	7.94986554177622	8.23898328718142	8.20437322993061	8.0517413901355	-0.0704198982510073	0.758963734415263	0.940311236380535
Merged-chr17-67345380-4	chr17	67344877	67345877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MTD|LTR|ERVL-MaLR	9082.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.00297971306391	7.74450494189111	7.70374963247502	8.0169238247498	7.73076680771847	7.60967449415444	-0.0385595420506006	0.874166413083658	0.970650531778227
Merged-chr2-167885246-2	chr2	167884746	167885746	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47081.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.37051785356705	4.36767793764537	4.53521150135862	4.37490897180122	4.59076680633369	4.78899680490171	0.42066487254324	0.337385932267135	0.727379418372427
Merged-chr2-144008152-2	chr2	144007652	144008652	+	743.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	3111.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	4.68306317531057	4.69797428275439	4.89921270990757	4.82627240780755	4.71728377570039	5.2484546322815	0.404968989463141	0.331219609598581	0.722596533854639
Merged-chr6-116126632-1	chr6	116126132	116127132	+	553.0	f1_balb.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	66742.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	4.21706754884893	4.29476509433314	4.25831664572942	4.13825040619305	4.36346310189539	4.41250117125716	0.138633723754209	0.76165745122995	0.941258867861232
Merged-chr11-101641474-4	chr11	101640980	101641980	+	844.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	13531.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	7.3590217827834	7.10631416778508	6.70389878883723	7.20397387878936	7.2962902177517	6.92386856379576	0.0941221612747439	0.743491980987299	0.935657324217812
Merged-chr8-13841568-4	chr8	13841068	13842068	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3479.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	3.74196474564034	3.75979917397456	3.5842708956873	3.70517598512004	3.74644612045514	3.59975828388682	-0.0441570815898201	0.935477967891015	0.985852245513165
Merged-chr14-55680224-2	chr14	55679724	55680724	+	644.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145705, exon 6 of 9)	exon (NM_145705, exon 6 of 9)	1593.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	3.91019596416103	3.69423020296681	3.71545230996742	3.86498852180032	3.98516534361302	4.03698030825264	0.571376057419267	0.271843484127465	0.669225282595312
Merged-chr6-134701000-4	chr6	134700510	134701510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	60070.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	6.34930213728098	6.10961647615004	6.165851304383	5.91924091364746	5.92665533787157	6.18474853712222	-0.354456283076244	0.229749749816139	0.625434050340291
Merged-chr6-39562383-4	chr6	39561888	39562888	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4554.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	3.33485021717431	3.55216894210952	3.63510288209565	3.63886714222638	3.57548375961575	3.54647886953828	0.284945770025822	0.619467687339958	0.889785897704524
Merged-chr12-100778963-4	chr12	100778450	100779450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-107.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	7.60469366646381	7.72436736379127	7.46801592696023	7.3567715159978	7.37957544594594	7.20929461254338	-0.421772551204163	0.0694493794787629	0.344832910929395
Merged-chr13-69431286-2	chr13	69430821	69431821	+	639.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	102543.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	2.41469587543092	2.34698898340535	2.49372925877649	3.16370012384451	2.9305706702268	3.19862380698493	5.56594625336342	2.08181853576391e-05	0.000754788482456836
Merged-chr19-53424338-2	chr19	53423838	53424838	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33704.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	5.53162368787272	5.69144867686844	5.41275042740491	4.73435910880287	4.46669609800887	4.40032260513116	-2.19429602885885	5.24158250286841e-08	4.03461236724028e-06
Merged-chr17-46252822-4	chr17	46252369	46253369	+	832.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145353)	TTS (NM_145353)	-1296.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	3.90743010734495	3.88468118540709	4.16297282075795	4.09494604314171	4.14159502375634	3.89430594242268	0.214991513634522	0.669316226554264	0.909615408611738
Merged-chr14-52023080-6	chr14	52022586	52023586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2353.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	7.13454386299803	7.23161783289338	7.33169157620048	7.37750922023519	7.52340513665668	6.83337311414156	0.0864573136709034	0.757192883741273	0.939819795914786
Merged-chr1-139065425-4	chr1	139064923	139065923	+	957.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	87766.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.14665930424158	4.02480308934725	4.15268721343052	4.06344358222576	4.0053343991375	3.98236524793089	-0.258983358092647	0.59092091610445	0.877301111216348
Merged-chr13-48882130-2	chr13	48881630	48882630	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 17 of 17)	intron (NM_001033268, intron 17 of 17)	-11245.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	2.77679373092816	2.67103154683483	2.81242173606829	2.78699930350134	2.7358774567982	3.00025596142499	0.45550755823628	0.529332561681756	0.850858761565065
Merged-chr10-128792193-1	chr10	128791693	128792693	+	565.0	f0_c57.idr	intron (NM_021412, intron 2 of 8)	B2_Mm2|SINE|B2	1238.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	3.27272945468612	3.37466465760546	3.51759097741913	3.15674916258196	3.27553988194582	3.37673155538211	-0.465875241397994	0.449420029652814	0.807765354206928
Merged-chr11-93885781-4	chr11	93885297	93886297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-31.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	8.69154244407103	8.80072148670399	8.5234135709936	8.71734827041531	8.63085950400771	8.28862013093096	-0.160650066053674	0.48087478396512	0.82484061161583
Merged-chr5-125361775-2	chr5	125361275	125362275	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	-20681.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.84117281128427	3.331732894981	3.42842376312975	3.48539378665726	3.452646263454	3.38421334224413	-0.420514327893479	0.496089247503581	0.832884389427821
Merged-chr17-31594787-4	chr17	31594286	31595286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027493, intron 6 of 11)	L1MD|LINE|L1	30013.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	5.00667997903837	4.7447977124988	4.63501198554386	4.49921496768356	4.27074678054509	4.81686850310157	-0.65512635444223	0.143648297208031	0.50595527912656
Merged-chr11-76611059-3	chr11	76610557	76611557	+	860.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33318.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.53541199095024	4.3887604894569	4.55744292049215	4.67445740544434	4.67417179215017	4.40723481751664	0.264225255723614	0.537056077215124	0.854305051501396
Merged-chr3-22090559-4	chr3	22090077	22091077	+	832.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13925.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.73851471923965	5.9532389095482	5.71521623466658	6.04970403343685	5.93202063918216	5.66654607835792	0.15696398821689	0.621153838237341	0.890565198066021
Merged-chr3-106809486-1	chr3	106808986	106809986	+	613.0	f0_balb.idr	Intergenic	L1M2|LINE|L1	13071.0	NM_146489	258482.0	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	2.69886572489568	2.77648242313872	2.82521090003148	2.69520948670375	2.61046722569634	2.83807351699712	-0.286513174443187	0.69631319984036	0.919440123947475
Merged-chr2-33962225-3	chr2	33961719	33962719	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-74273.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.21249881462001	4.26419208747444	4.32355074051984	5.25335069067164	5.19005626985789	4.87091032466235	2.04307997329942	1.33769727618388e-06	7.00316982179594e-05
Merged-chr5-34948932-1	chr5	34948432	34949432	+	744.0	f0_c57.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-516.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	3.99517380731649	4.20023421327634	4.45929028893092	4.18744241131967	4.14805929182658	3.93868838851387	-0.340457432937073	0.496188902916235	0.832900670442891
Merged-chr18-82914429-7	chr18	82913873	82914873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177464)	promoter-TSS (NM_001177464)	-259.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	8.19052368737019	7.4458844118538	7.5387611695569	7.97540635698824	7.7719336257198	7.81696621770743	0.114056977914952	0.689235850006689	0.917319650405699
Merged-chr9-7558383-4	chr9	7557884	7558884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008611)	promoter-TSS (NM_008611)	-45.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	3.42438833289003	3.16807735401583	3.16093767420553	3.15101297536157	3.00181428860063	2.98698778830555	-0.920293551459406	0.16732211146193	0.543043070852808
Merged-chr16-87354339-4	chr16	87353827	87354827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159331, exon 1 of 5)	exon (NM_001159331, exon 1 of 5)	142.0	NM_026366	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	6.87853784299572	7.33070928001158	7.23469870904305	7.24871657025806	7.1449776241944	7.0571233451679	-0.0105010819204404	0.967787387586231	0.992600001803016
Merged-chr16-11137054-2	chr16	11136554	11137554	+	664.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027502, exon 23 of 23)	non-coding (NR_027502, exon 23 of 23)	-2522.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	2.90856654810075	2.79909079825998	2.99093823457314	3.0458551832493	3.04596039278303	3.28751050844322	1.06248966162715	0.120633113582202	0.464567086109036
Merged-chr19-3924612-4	chr19	3924115	3925115	+	801.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	5101.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	5.29035057601176	4.99036431174889	5.42610688229224	4.97800710122477	4.95531387398136	4.83106661026347	-0.657389047109903	0.0871185154970597	0.391280460797426
Merged-chr9-99143109-4	chr9	99142586	99143586	+	907.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2875.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.77484790037605	3.70475913970038	3.64456381904726	3.99336152528749	3.55319295169961	3.96969630399432	0.439090701328698	0.431695203551544	0.797034816427545
Merged-chr15-74925102-5	chr15	74924692	74925692	+	820.3905030000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29859.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.01643540377991	6.14726038012346	6.04903772204272	6.62856684845714	7.08612593699088	6.50534699453932	1.14292688593061	0.000145660800859321	0.00387720534801741
Merged-chr7-127470396-2	chr7	127469896	127470896	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	6.37870745263853	6.41277850420803	6.40877572498415	6.33853220154657	6.64501788581267	6.50460513497105	0.174726210930916	0.519956842084783	0.846082496556008
Merged-chr3-38143710-4	chr3	38143203	38144203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64416.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	7.29786732675404	7.32529157172813	6.87680744907309	7.61044929280098	7.82032694632099	6.85467948906029	0.462321322697452	0.154894726988041	0.524183835210924
Merged-chr11-34060193-4	chr11	34059682	34060682	+	679.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	13254.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.42383479765464	5.25605341420346	5.71779080720974	5.75141698116751	5.58797121053272	5.77917107360738	0.445292168779362	0.190139912138865	0.576299386028668
Merged-chr1-91038191-4	chr1	91037690	91038690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-15254.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.43603928804464	4.39368256612993	3.96832608655769	4.28801861311846	4.29653643049197	3.92952912665356	-0.272641998734968	0.595012087966674	0.879266992532695
Merged-chr11-102430381-4	chr11	102429885	102430885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008175)	promoter-TSS (NM_008175)	63.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	8.49089551330212	8.56090077601678	8.18672153485991	8.60276962858962	8.80094167969474	8.22856204678495	0.201210652878463	0.420857749849207	0.789955597776964
Merged-chr19-4741795-3	chr19	4741263	4742263	+	815.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021287, intron 19 of 36)	LTR16C|LTR|ERVL	-14762.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	3.56301302577793	3.68009538964663	3.67935549718212	3.44305404175267	3.2732614076711	3.59512000414156	-0.757705308914495	0.194233763302328	0.581403645992907
Merged-chr3-87401454-4	chr3	87400996	87401996	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310545, intron 10 of 10)	intron (NM_001310545, intron 10 of 10)	25109.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	4.96379521110098	5.07437331416086	5.07499774073302	6.78049976216097	7.15118662830607	6.6040537035481	3.27337602079533	2.99045555006386e-22	3.03451006597212e-19
Merged-chr5-20932821-4	chr5	20932311	20933311	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	PB1|SINE|Alu	-18178.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	5.16304973459772	5.01330906535414	5.04462865333503	5.14628535529425	5.31598071842775	4.88372652850919	0.136140071674425	0.719011378662512	0.927633547003347
Merged-chr7-127289516-3	chr7	127289015	127290015	+	891.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6745.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	6.09271604143793	5.47378212974886	6.06150599695676	6.06632833907597	5.94019201074994	6.18394979464917	0.278808717708382	0.412698214199548	0.784565767944438
Merged-chr2-25422754-4	chr2	25422184	25423184	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289453)	promoter-TSS (NM_001289453)	-558.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	5.86999770393493	5.59609034263403	6.20166600771397	5.9714140050493	5.79791472360723	5.63711841952717	-0.155749819958123	0.648198717631745	0.901717305258003
Merged-chr3-121693477-4	chr3	121692988	121693988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22725.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	5.9058189755811	5.62935254629523	5.85923574843443	6.25878391529781	6.29687976489689	5.94594413888301	0.669461634077712	0.0299579848637325	0.208737565277295
Merged-chr10-118051677-1	chr10	118051177	118052177	+	894.0	f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-90110.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.11128463438222	7.26620334721572	6.83282674357189	7.2090146791604	7.43972860016897	6.95238384604137	0.202169440199393	0.46124358221253	0.814992635038861
Merged-chr4-24567181-2	chr4	24566681	24567681	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	70730.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	3.53982286107459	3.81596930452118	3.75107542724543	3.45844412336015	3.06951866356165	3.39598162699552	-1.49654967882911	0.0182124506005903	0.152062979452967
Merged-chr10-100032232-2	chr10	100031732	100032732	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	PB1D9|SINE|Alu	16411.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	7.44976199693112	7.75057732378314	7.05695114186695	7.32087030538862	7.50547842804371	7.00050454808671	-0.233926085645448	0.424810818308107	0.792848465017231
Merged-chr1-157443896-3	chr1	157443359	157444359	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14709.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	5.65206578071205	5.6972573183284	5.50406148348306	4.7707330936257	4.8511157762262	4.81969389805651	-1.6624752358217	4.05008723348994e-06	0.00018416041550993
Merged-chr18-69655651-3	chr18	69655139	69656139	+	927.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 14 of 19)	intron (NM_001361128, intron 14 of 19)	-269920.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	4.63467611177996	4.37619982701174	4.9210312246068	3.91973208879055	3.83077038338308	4.64977269706603	-1.22387912090403	0.0278761907020196	0.199393567353258
Merged-chr16-91834245-4	chr16	91833770	91834770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 16 of 28)	URR1B|DNA|hAT-Charlie	97360.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.2178874677583	6.15630820832845	6.27428001943214	6.5599732368507	6.68834109234366	6.25178169476498	0.51052170341439	0.0727634913356548	0.354375451393454
Merged-chr16-38773040-3	chr16	38772549	38773549	+	621.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178924)	TTS (NM_178924)	27154.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	2.60783522163419	2.7180070634856	2.76228509850087	2.72504404669444	2.61005778161124	2.5841394126738	-0.297424270202234	0.692170579632082	1
Merged-chr4-95250303-4	chr4	95249820	95250820	+	891.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198098.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.44444200837668	2.53462497734874	2.68513308771313	2.45755612748901	2.55965291659412	2.37691707089761	-0.496724718075366	0.541339236585644	1
Merged-chr4-121009339-4	chr4	121008834	121009834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	7913.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	6.28817932120617	6.25386580269354	6.18963485709425	6.11126953468998	6.27080125293188	6.143054285257	-0.109649891407433	0.693833592202537	0.919065250351864
Merged-chr4-97777755-4	chr4	97777265	97778265	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122953, exon 1 of 10)	5' UTR (NM_001122953, exon 1 of 10)	139.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.33934921623604	4.88991533980477	5.25730980111614	5.2255141354966	4.7826839313073	5.25914044906016	-0.159122670675011	0.694499614426276	0.919210273513843
Merged-chr16-23307048-2	chr16	23306548	23307548	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	16578.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.54810235901339	6.47811659118066	6.59520327845954	6.33960295361357	6.3657417029547	6.57142621795696	-0.18769298592997	0.481832566987728	0.825208669475694
Merged-chr2-155237568-2	chr2	155237064	155238064	+	889.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_111890, intron 1 of 3)	RMER21A|LTR|ERV1	956.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	4.11077198507035	4.25213133257973	4.14412331867126	4.2342752682682	4.22814102531084	4.11677513573523	0.0705102394045821	0.879753305469197	0.972209483252287
Merged-chr18-80468599-4	chr18	80468076	80469076	+	919.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1091.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	6.17729153586848	6.11789347374054	5.95553839994014	5.97926801460098	6.14765385798039	5.81411381785625	-0.160771467465519	0.59376804994551	0.878614523756331
Merged-chr11-21220920-4	chr11	21220421	21221421	+	976.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18111.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.59281911746294	4.55556552483836	4.66157835515694	4.70937984433858	4.67863834279428	4.64785259791098	0.19079255521037	0.637363885960589	0.897347930665099
Merged-chr5-115562676-1	chr5	115562176	115563176	+	919.0	f1_c57bl6.idr	intron (NM_007475, intron 6 of 6)	intron (NM_007475, intron 6 of 6)	-2587.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	2.40289707705761	2.29639363970254	2.52933059725163	2.46555639043275	2.35793971621911	2.72349367025176	0.665851474541273	0.421124741339298	1
Merged-chr6-125167236-2	chr6	125166736	125167736	+	952.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289726)	promoter-TSS (NM_001289726)	-769.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	5.82764403667414	5.84444108448573	6.13616354021036	6.19437665217785	6.35409494047788	6.17564366686881	0.543059572690916	0.0658460256299759	0.33487660293497
Merged-chr11-109420792-2	chr11	109420292	109421292	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5154.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	5.23913645758235	4.95845736235864	4.48312747577764	4.69144616914598	4.13553014089168	4.68394434974142	-0.955542062177046	0.0512503953284346	0.288513129875908
Merged-chr9-21852660-4	chr9	21852143	21853143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177030)	promoter-TSS (NM_177030)	-8.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	4.39766260542603	4.61349887523737	4.59610274838789	4.28168217265952	3.94448496588854	3.98351136163571	-1.24046503632182	0.00960557321615605	0.0978178350151957
Merged-chr1-59684962-4	chr1	59684475	59685475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-31.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	6.34271645260065	6.79879896412779	6.75188910222341	6.87086033272308	6.92997918644127	6.63312520065559	0.281134778045011	0.320595777523601	0.71443084860826
Merged-chr1-91080518-4	chr1	91080021	91081021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 6 of 22)	intron (NM_008515, intron 6 of 22)	27077.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.92840538624209	6.72692511037527	6.74321942890662	6.63745892513376	6.87084996084205	6.28682446480226	-0.26402396299161	0.360823715435757	0.746938274913623
Merged-chr16-25059798-2	chr16	25059298	25060298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040374, exon 1 of 3)	non-coding (NR_040374, exon 1 of 3)	159.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.99548259973369	7.23443259107741	7.26267194237875	6.88968681293652	7.08801818908236	6.9737017664519	-0.268337312451369	0.280656962933594	0.67872539226839
Merged-chr12-86046315-4	chr12	86045804	86046804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	L1MB3|LINE|L1	32737.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.53274582783718	6.66471267238892	6.20257263882737	6.52421946237564	6.72635471079731	6.57666601183312	0.195639908849849	0.490011537837929	0.829980359087456
Merged-chr10-57794748-4	chr10	57794226	57795226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020561, exon 1 of 8)	exon (NM_020561, exon 1 of 8)	182.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	8.83136392825168	8.89305597929422	8.43205445328089	8.72000467470185	9.02329191654421	8.71541254878123	0.125372813016321	0.595639732305851	0.879568440346791
Merged-chr6-149207279-4	chr6	149206781	149207781	+	621.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18569.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	3.65822238666376	3.90548079937785	3.90512497049973	3.8827553277614	3.68882182236654	4.02052370660222	0.116319373765977	0.827783338311208	0.959520171823791
Merged-chr11-68520086-6	chr11	68519661	68520661	+	884.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	17142.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.06460924202619	5.63444684401176	6.42002459937762	6.20606147670759	6.3944855102511	6.35455828920409	0.426564057727833	0.203142261180919	0.593047970473348
Merged-chr3-98019485-4	chr3	98018990	98019990	+	795.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	5952.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	2.869403505568	3.07009306532093	3.02312426726827	3.03352720183794	3.05162738308479	3.26480084948074	0.565833784864469	0.400081936785811	0.776362382142343
Merged-chr4-15958248-7	chr4	15957704	15958704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013752, intron 1 of 15)	CpG	237.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	8.21395736567767	8.68640159460465	7.96890818611729	8.15467655584686	7.9717892501715	7.87900034869429	-0.456243176644331	0.087661156525906	0.392705368375557
Merged-chr3-35754021-4	chr3	35753530	35754530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029570)	promoter-TSS (NM_029570)	-33.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	5.88995640170083	5.51909558670927	5.570590415471	5.84638934623021	5.57627785993469	5.57580203722682	-0.00455288631375387	0.989202252833452	0.997534219501968
Merged-chr2-104710919-4	chr2	104710427	104711427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177190, intron 1 of 9)	L2c|LINE|L2	1235.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	5.65298437903971	5.75715115331187	5.40048242735684	5.51908762400007	5.15257090454942	5.19876649699728	-0.617231696922322	0.0818565693876325	0.378563885371616
Merged-chr5-104973652-4	chr5	104973164	104974164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 5 of 15)	intron (NM_030239, intron 5 of 15)	9053.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	6.60883239559912	6.830410619774	6.53053052745086	6.56334888250399	6.76081573966688	6.38252202211466	-0.127198424961054	0.648378730312468	0.901766609676507
Merged-chr8-13106434-2	chr8	13105934	13106934	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 2 of 19)	intron (NM_146207, intron 2 of 19)	713.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	5.76733972420218	6.05657324115821	5.91659109310103	5.67999505914981	5.508488921035	5.59144826641195	-0.596075734325116	0.0593145971595345	0.315444778246871
Merged-chr6-17589835-4	chr6	17589314	17590314	+	853.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47196.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.70290639125998	3.88811209613477	3.67404651808023	4.43296636873508	4.3751856468423	4.30991486349925	1.79141273824065	0.000457461603066112	0.00980032571264806
Merged-chr18-60891381-4	chr18	60890887	60891887	+	985.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20853.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	2.82826137953297	2.63186428909993	2.64102769025426	2.69927065241228	2.77021030666888	2.89818194344141	0.437807070987602	0.555390155159998	0.86322787018872
Merged-chr17-32891701-4	chr17	32891170	32892170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-67.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	5.23225878243355	5.40303514147733	5.65470946199346	5.70829911437958	5.67805570492503	5.69061664353754	0.495537906224151	0.137267704502271	0.495027571456897
Merged-chr5-30664139-2	chr5	30663639	30664639	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2747.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	3.16051907172144	2.7032681806556	3.11705218494715	3.01117740096236	3.07602249370868	3.07333413539388	0.200480625849327	0.781304480952005	0.946174647340264
Merged-chr6-97406523-1	chr6	97406023	97407023	+	780.0	f0_balb.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	52763.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.25370747270682	4.33867147815635	4.70531267821649	4.22537541559671	4.16189501816218	4.83182421975258	-0.017308366204658	0.972897840089454	0.993897323428832
Merged-chr3-90254204-4	chr3	90253721	90254721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013901)	TTS (NM_013901)	363.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	7.57724194834101	7.72311239385616	7.5138156158019	7.59170748660991	7.45571409223814	7.34660570844851	-0.20471870194743	0.374828118037699	0.758128885281656
Merged-chr2-167864444-4	chr2	167863946	167864946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67881.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.68758113948774	4.26391813348343	4.60770952624197	4.39193679774677	3.96837948062228	4.67319281056179	-0.413090306394624	0.41380713000577	0.785367083470648
Merged-chr3-97776432-2	chr3	97775932	97776932	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-8418.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.3377766728198	4.049528218048	4.11392355782104	4.18974850604432	4.27477445074742	4.27579924420498	0.195519398242184	0.677927611200288	0.913273135651048
Merged-chr8-85517273-5	chr8	85516812	85517812	+	698.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 7 of 11)	intron (NM_173866, intron 7 of 11)	24695.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	3.52095818309694	3.70855133364591	3.64606477246979	4.27748369442694	4.35021437396968	4.13779636483885	1.9826083105966	0.000177364281421035	0.00453816947370279
Merged-chr2-125782112-2	chr2	125781613	125782613	+	789.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	757.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	6.79046570145826	7.00163089264733	6.9582492403913	7.11250774084045	7.28651164993855	6.8565731417849	0.287574500229334	0.270125015385396	0.667139350599521
Merged-chr10-96280422-3	chr10	96279923	96280923	+	794.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54216.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.52319234562268	3.33962220529555	3.29388174548298	3.19406348994186	3.35200390676225	3.18736237866486	-0.55790298597645	0.372935795685822	0.756841093812978
Merged-chr11-60927445-4	chr11	60926931	60927931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	4436.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	2.98123401384447	2.73909435812335	3.29085215174644	2.8848951537171	3.06532741577713	2.91091378292192	-0.272080804597024	0.711489436741114	0.924661173262022
Merged-chr11-52003206-4	chr11	52002698	52003698	+	917.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	7.85284935091886	8.11338388112726	7.68720451631206	8.10153463005145	8.42130503128524	8.02018233636901	0.418627226217228	0.0915751228237051	0.402843395184502
Merged-chr2-124625963-2	chr2	124625463	124626463	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	15667.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.57798252624593	6.58535702144587	6.22210888757044	6.29944216044358	6.51984348964392	6.0779517423454	-0.255786216550696	0.394024597429286	0.772046311610617
Merged-chr19-47137368-4	chr19	47136874	47137874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133746, intron 1 of 2)	intron (NM_133746, intron 1 of 2)	920.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	7.11348864124779	6.92920802138193	7.00790063033579	7.39970531364944	7.37143767453671	7.21946551521181	0.47583425078752	0.0452893369810329	0.268617517393812
Merged-chr7-90214215-4	chr7	90213705	90214705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51227.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	5.34287103937139	5.30821816325283	5.09500201759933	5.66735109341883	5.5879859357472	5.26773874822808	0.517453087690719	0.143622264872849	0.50590641840403
Merged-chr17-33908392-2	chr17	33907892	33908892	+	559.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045146, exon 2 of 2)	non-coding (NR_045146, exon 2 of 2)	786.0	NR_045146	407803.0	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA	4.83341857483063	4.73332260837959	5.09231684186936	4.47532403223236	4.68678650143108	4.89226107424006	-0.449123022189396	0.283586331364032	0.681376161050487
Merged-chr11-69981262-4	chr11	69980764	69981764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-29.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	7.83741864747709	7.44796521787721	7.91938834525421	7.92102704640641	7.63786279793906	7.86029216700134	0.0897305369557124	0.719943888067582	0.927969809283981
Merged-chr2-4509472-5	chr2	4508990	4509990	+	821.200012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-50264.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.65598141154166	6.88258475810747	6.73038400616761	7.0576393134631	7.16386062097062	6.95389816189726	0.468164257287405	0.0623851675497192	0.324555772256911
Merged-chr11-86754520-2	chr11	86754020	86755020	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	3047.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	6.56579587350068	6.27861055093784	6.24074591448925	6.65352360404367	6.87152266963107	6.23614646303634	0.404814773561203	0.189846098551578	0.575907966795463
Merged-chr2-58907013-1	chr2	58906513	58907513	+	638.0	f0_balb.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	151829.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.38411676542562	4.37962470355946	4.26268981461792	4.16737728078511	4.20487815645675	3.93121070219702	-0.630490736363041	0.185026383859129	0.569091204638575
Merged-chr4-9647172-3	chr4	9646674	9647674	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3457.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.31818110138752	5.03033551507973	5.30920760564744	5.92668765570339	6.24668987001897	5.67718852077804	1.42267065519943	5.30814835001297e-05	0.0016635796908018
Merged-chr7-102032690-3	chr7	102032194	102033194	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	MTC|LTR|ERVL-MaLR	-14539.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	6.35113287596423	6.45047470690886	6.65482451101049	6.43907799069923	6.60136872518628	6.81755423772554	0.222400770676016	0.424713990514313	0.792812153061468
Merged-chr19-10297185-4	chr19	10296686	10297686	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7691.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.97948035574058	4.87265123118386	5.24079993560777	4.6011764293521	4.22628882333919	4.82045521689204	-1.09485519605608	0.0135444795804158	0.123983394601457
Merged-chr4-150013770-8	chr4	150013192	150014192	+	985.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4669.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	7.26860111782107	7.29692291460128	6.86460428674304	7.18636797733601	7.38587385538942	7.31696563779724	0.196300034613914	0.444061094559837	0.804000164417497
Merged-chr17-34314285-1	chr17	34313785	34314785	+	759.0	f1_c57bl6.idr	exon (NM_010382, exon 3 of 6)	exon (NM_010382, exon 3 of 6)	8418.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	2.68770589999336	2.50617207739519	2.69993997670008	2.89108284754792	3.1584336397756	2.9627931257489	2.06278369117675	0.00804419428792282	0.0864034715632982
Merged-chr12-99393106-4	chr12	99392599	99393599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	CpG	56975.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	7.90604058204087	7.61728279615311	7.3403791377501	7.51057828760726	7.32624348119729	7.40883168428981	-0.341918190354863	0.182228959210061	0.564974338265291
Merged-chr10-98948229-4	chr10	98947717	98948717	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	33065.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.81310685317375	4.42429925916426	4.59852600007979	4.68792398477154	4.5175137907362	4.58263390982708	-0.0663272631157554	0.877225172622637	0.971507742080987
Merged-chr2-25982793-2	chr2	25982293	25983293	+	924.7999880000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276361, exon 1 of 18)	exon (NM_001276361, exon 1 of 18)	489.0	NM_001276360	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	3.99713316230163	3.79510041660613	3.59613429652122	3.94726328854681	3.35993771900633	3.55310482477804	-0.542283130615233	0.375175916340158	0.758556583730181
Merged-chr7-30431964-4	chr7	30431456	30432456	+	807.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91B|DNA|hAT-Tip100	8681.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	3.45469605336896	3.20880344114273	3.50662461258426	3.27775252098208	3.19519393531706	3.24818087146043	-0.613181138323973	0.323847921456595	0.717120257969349
Merged-chr8-64945937-3	chr8	64945460	64946460	+	739.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1225.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	4.78010623841342	4.47074939636479	4.65170851599047	4.9014127535425	4.69115265707801	4.63630498688772	0.257606909923811	0.53713305749197	0.854311531235259
Merged-chr15-31454179-2	chr15	31453679	31454679	+	856.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	-490.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	6.67222515292012	6.74790822712157	6.79402804368155	6.71212166342279	6.91402324503166	6.90991861371911	0.176034092184719	0.484744617246021	0.827037730404078
Merged-chr1-191609770-2	chr1	191609268	191610268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178632, intron 11 of 19)	MTC|LTR|ERVL-MaLR	34132.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	3.63334427881039	3.3825150508938	3.77466028747337	3.56936193005903	3.72530838519462	3.53247612191524	0.0586912729564796	0.919352422655207	0.982021663622864
Merged-chr9-66341731-2	chr9	66341231	66342231	+	975.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-8719.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.09336217125419	3.76983867732221	4.00042885526521	4.09920103781301	4.52531925834252	4.21461272989281	0.96257592655084	0.0582507583638962	0.311861115289812
Merged-chr11-118401232-3	chr11	118400735	118401735	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	724.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	6.56185815855758	6.949170112624	6.51664810666688	6.44924779429426	6.63023814388987	6.36685780508983	-0.325717210874308	0.256925806231537	0.654110163844009
Merged-chr12-52318657-3	chr12	52318140	52319140	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	161969.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.72576789595588	4.90043299126268	4.68430085403905	5.92608252689011	5.88689700507757	5.05622361502458	1.83088890714355	1.43938876900086e-05	0.000548642513472392
Merged-chr8-22861682-4	chr8	22861188	22862188	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 2 of 17)	intron (NM_001081149, intron 2 of 17)	2149.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	5.10961273494361	4.95981453524379	4.90652975891128	4.96089381974259	5.0927513925345	5.24394543971637	0.210608247513301	0.572952844000856	0.869934493236159
Merged-chr10-20398407-4	chr10	20397894	20398894	+	943.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013875, exon 13 of 13)	3' UTR (NM_013875, exon 13 of 13)	50575.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	4.73073301275837	4.75770700995333	4.71249984004251	4.64313340874387	4.63546146749218	4.48622272689896	-0.329043497616811	0.418375127826313	0.788591657834186
Merged-chr13-23721002-4	chr13	23720492	23721492	+	885.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-10138.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	4.775681022482	4.4681501726154	4.88367154424021	4.46190585801231	4.65690457652833	4.65357696287294	-0.281139276610842	0.512084549221386	0.841669751538036
Merged-chr11-54770026-3	chr11	54769541	54770541	+	801.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	Lx8|LINE|L1	17662.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	4.69343178973438	4.9195513575569	4.95230961557098	4.61246883256302	4.58951282922665	4.16679388612992	-0.881459859565919	0.0502672579975903	0.285339259852936
Merged-chr1-194677981-1	chr1	194677481	194678481	+	1000.0	f0_balb.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	58152.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	2.54759223518206	2.60333509866385	2.70194902356856	2.47699023958467	2.52351317873047	2.71447433138401	-0.258620939898451	0.737689412177757	1
Merged-chr4-120954545-2	chr4	120954056	120955056	+	927.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-2855.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	3.75846302891011	3.85974823385629	3.94841143324208	3.33754908452067	3.53442779109914	3.82911810792288	-0.945729613283464	0.102494362930775	0.426993390944211
Merged-chr4-147402434-4	chr4	147401930	147402930	+	874.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	B2_Mm2|SINE|B2	-150847.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.35304605262829	3.74356678265548	3.72355409704989	3.18734470290961	3.40053281400678	4.14158304314605	0.0889025003874155	0.899197818991727	0.976510508522132
Merged-chr5-143530886-2	chr5	143530386	143531386	+	774.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2855.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	3.50406832265844	3.41549528832593	3.56510873627079	3.57209934459317	3.31883790902659	3.35962134835358	-0.270914245521103	0.646405563720226	0.90099114147517
Merged-chr11-36942947-1	chr11	36942447	36943447	+	545.0	f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	1294.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.88740604311454	3.8211904604695	3.95821223720949	4.50539439941618	4.74225012709629	4.37084003064313	1.88108388565313	9.6491107624074e-05	0.00275148460698559
Merged-chr11-68691795-4	chr11	68691297	68692297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-118.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	6.30692239950344	6.45456440624279	6.0350429659405	6.06033517196445	6.23251557758501	5.84430267614383	-0.3684707882592	0.233916786805612	0.630158568371129
Merged-chr9-85567448-1	chr9	85566948	85567948	+	928.0	f1_c57bl6.idr	Intergenic	Intergenic	181886.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	2.65245442086106	2.82364421760693	2.52147729767959	2.84809069940473	2.89941942692987	2.858969221937	0.99578562975045	0.19829679643649	0.586599823588148
Merged-chr5-114127583-4	chr5	114127112	114128112	+	987.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359940, exon 2 of 4)	exon (NM_001359940, exon 2 of 4)	606.0	NM_001359940	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	6.26805267098424	6.90760204080429	6.70041104498427	6.88909791180877	7.13140322592453	6.5903735131174	0.379249184675884	0.226208978689551	0.621140322788657
Merged-chr6-125192153-4	chr6	125191662	125192662	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-38.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	6.95399082143397	7.16247765316216	7.4567757157846	6.88336256849685	7.15971167479277	7.21926272439008	-0.159441250829076	0.555325248570113	0.863191483122339
Merged-chr11-103382081-4	chr11	103381602	103382602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-18410.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.76886505984701	7.8835160743855	7.30869566230835	7.45320937854185	7.71177251211797	7.43445962025796	-0.205037223905259	0.436858832835539	0.799681606793859
Merged-chr11-100555286-2	chr11	100554786	100555786	+	622.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 7 of 11)	intron (NM_028918, intron 7 of 11)	9654.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	1.92994906815454	1.98677129679494	1.91748329062186	2.32252295008771	2.07908100717578	2.27183006443603	2.27341024735682	0.023947233877007	1
Merged-chr10-80696674-3	chr10	80696160	80697160	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	LTR33A|LTR|ERVL	5160.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	6.87926112160193	6.63309439763771	6.36097004257813	6.61848012534575	7.18425780104279	6.89923126930421	0.430623068616983	0.155342683978781	0.524967673158411
Merged-chr4-134925973-2	chr4	134925473	134926473	+	967.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 3 of 4)	intron (NM_023665, intron 3 of 4)	2348.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	5.00008758954625	4.76391343106478	4.74007114342943	5.29803809014583	5.09153651446486	5.36061980385375	0.851522524300191	0.0261015340985069	0.191728383865068
Merged-chr2-85048441-2	chr2	85047941	85048941	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2019.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	5.77792371050007	5.69883262301752	6.05913043898933	5.9642685261491	5.70828632794502	5.77097850311551	-0.0461387766041367	0.884921023737557	0.973538624783452
Merged-chr4-150486333-4	chr4	150485872	150486872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165802.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.43066557968771	7.54495548762033	7.09287829957378	7.16997812952368	7.40463126917327	6.92281549001554	-0.276840435960645	0.309831148655725	0.705462734304293
Merged-chr19-12591704-1	chr19	12591204	12592204	+	543.0	f1_c57bl6.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4862.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	3.94915173400645	3.7483607434612	3.89442893307944	4.20553862534643	4.04562259996755	4.41294634681392	1.0449014367856	0.0388891533295466	0.244494799414047
Merged-chr11-54522825-4	chr11	54522330	54523330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-15.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	8.71698825879726	9.00531248196923	8.33782399260972	8.49359990258876	9.04867403371715	8.33587731153186	-0.0675959063907774	0.815711409078665	0.956465653447018
Merged-chr9-21619394-1	chr9	21618894	21619894	+	908.0	f1_balb.idr	intron (NM_001357764, intron 1 of 34)	RSINE1|SINE|B4	3225.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	2.31118951550499	2.20771483914865	2.29834800810959	2.41729216438127	2.29794623199587	2.56442878832739	1.01065868113527	0.231515498295038	1
Merged-chr10-62230704-2	chr10	62230204	62231204	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	CpG	514.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	6.08866445941769	6.36324803527747	6.15979200618468	6.08322273322875	6.04394208805206	6.11269908355752	-0.230007385972193	0.424208839591378	0.792580422694945
Merged-chr5-122988556-2	chr5	122988065	122989065	+	603.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	534.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	6.25664098246566	6.3593691469548	5.89844341124177	6.20206144696431	6.48535527743901	6.19730898493863	0.185610936475019	0.54403110009636	0.857551302506722
Merged-chr17-87447030-7	chr17	87446539	87447539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007589)	promoter-TSS (NM_007589)	-104.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	7.85159356944933	7.758640769513	7.3236308453299	7.91789288589725	7.72487168937929	7.44968710566499	0.0630315908600068	0.813458762564569	0.955940138311315
Merged-chr2-52991618-2	chr2	52991118	52992118	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	133750.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.90949571827433	3.53576465188042	4.05225288249135	3.70421486590119	3.67806465844227	3.8906936714542	-0.281713874200163	0.615574370043507	0.888073730124794
Merged-chr7-16924619-2	chr7	16924122	16925122	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-590.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	8.02380554800927	8.20882618244004	7.84053420235816	7.8795131617113	8.00889677730554	7.50872950341332	-0.302869906927444	0.229406562950768	0.624949623166826
Merged-chr17-46830148-4	chr17	46829633	46830633	+	905.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100452, intron 1 of 10)	intron (NM_001100452, intron 1 of 10)	1280.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	7.13456959628763	7.54674846893687	7.02006922570907	7.11321575979543	7.39077603774211	7.03660356205984	-0.0985128546003679	0.721905455103586	0.928606209603791
Merged-chr14-57746112-4	chr14	57745579	57746579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	44.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	8.21903369427527	8.38414158273629	8.04237858306942	8.36551354053675	8.05525754017897	8.07637453128911	-0.0747049747632817	0.746619841388781	0.936300236930265
Merged-chr2-181541973-4	chr2	181541473	181542473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271585, intron 2 of 5)	intron (NM_001271585, intron 2 of 5)	21488.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	5.67282258894725	6.30405641082679	5.80723718862172	5.38768765109385	5.53224280420335	5.60282850808619	-0.831864102357685	0.0185683620702929	0.153918735918005
Merged-chr10-39732846-5	chr10	39732350	39733350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	690.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	7.6049958902081	7.58446540629266	7.3033137973617	7.36830332717075	7.35871749592534	7.24199852739837	-0.271777605401023	0.249964244754152	0.647138297370985
Merged-chr8-26835845-4	chr8	26835349	26836349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11426.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.04663496232987	5.09083346235498	5.24958182413908	5.34349613257781	5.02369725713243	5.25041363654421	0.167133753308454	0.647812758709712	0.901538008768873
Merged-chr11-75459769-2	chr11	75459269	75460269	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1770.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	8.68273174156946	8.86270961845124	8.72721280063649	8.65511671387481	9.08344401451773	8.6317114999303	0.0729312576515348	0.751590956068261	0.937888126462625
Merged-chr9-22119003-2	chr9	22118503	22119503	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1808.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	6.88184528548638	7.01957653051423	7.11784191276293	6.92882170251627	7.3009480131949	7.25794587516179	0.255523737454433	0.319040430772264	0.71299998254265
Merged-chr2-164683586-2	chr2	164683086	164684086	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR33|LTR|ERVK	-1521.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	1.80857183372521	1.99712304220821	1.96579066675213	2.17015198737758	2.02550019546549	2.37353616860966	2.16028800555229	0.0369482582267796	1
Merged-chr3-133541505-2	chr3	133541005	133542005	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040400, intron 1 of 10)	B1_Mm|SINE|Alu	2885.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	3.8208887638051	3.63353032865537	3.41230878474701	3.78265436730989	3.73633379132408	3.81925260843987	0.452970101314304	0.423892654065436	0.792272050905538
Merged-chr4-63408897-4	chr4	63408386	63409386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5441.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.59363979771476	4.15650308878131	4.16304338630612	4.46579701757502	4.01893438841325	4.28016546104746	-0.166399336744264	0.739974745867619	0.934390478699992
Merged-chr16-33914256-4	chr16	33913693	33914693	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	52845.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.68323369874519	5.51970272157469	5.69355307218418	5.21123298944167	5.25462822939254	5.57286397178386	-0.551064815212736	0.106208645764767	0.435104573718416
Merged-chr3-37693645-3	chr3	37693119	37694119	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30741.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	3.38073195142446	3.74247709263343	3.94927393620021	3.29924723525743	3.17132027643361	3.64498516738574	-1.1856939533815	0.0667928060532633	0.337771715453989
Merged-chr7-16296973-4	chr7	16296452	16297452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10157.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	6.45027001986991	6.19798910756265	6.08954560276445	6.75345550718994	6.83258936840806	6.64294551722977	0.781340841804408	0.0048935680298781	0.0603378453811147
Merged-chr19-8807032-4	chr19	8806539	8807539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4509.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	6.35955566976039	6.27787614224882	6.62895444935214	6.69891013590343	6.93237778416146	6.9896757547094	0.725953515774311	0.00779883746536658	0.0845615934086816
Merged-chr13-19395848-4	chr13	19395342	19396342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024270)	promoter-TSS (NM_024270)	-29.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	8.1389267689395	8.36019247424575	8.26730990990515	8.34626098493085	8.24620103309168	8.17469594174838	0.00028999958200635	0.998904083927602	0.999826323540084
Merged-chr11-103117310-7	chr11	103116785	103117785	+	977.710876	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	960.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	6.92982071397185	6.7223484287833	6.91197482641929	6.34443806088055	6.77209491945111	6.72185079252787	-0.354872689090596	0.19850772120397	0.586811013492516
Merged-chr1-152586754-2	chr1	152586254	152587254	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	38463.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.52724504566469	4.53163228776597	4.57391753386084	4.6514713624147	4.85391467533163	4.64079232321531	0.441252458376404	0.283184005211248	0.681169665885673
Merged-chr2-34744553-1	chr2	34744053	34745053	+	541.0	f1_c57bl6.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	10679.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.2586163699242	3.96267963689383	4.31278819449823	3.79302992335726	3.9738784993561	4.33802162652961	-0.387458623711426	0.458864587597578	0.813236440920954
Merged-chr3-37729342-4	chr3	37728863	37729863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5003.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	4.24187976371032	4.57241141046038	4.38457296333908	3.9071531145536	4.03939476470682	4.13877665072074	-1.05671479550235	0.0283307327431486	0.201502136757209
Merged-chr8-111940642-4	chr8	111940147	111941147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-56.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	7.22537522834741	7.60565323598646	6.93599095001724	7.28126317535343	7.4280827580113	7.26044490326435	0.0466534496310791	0.865725361194617	0.968641478520565
Merged-chr2-173018165-3	chr2	173017737	173018737	+	929.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3665.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	2.97498685428091	2.86522261432672	3.12957526547013	2.92503071148946	2.83955399480696	3.08893290579516	-0.187897982760491	0.785715954228485	0.948164689606319
Merged-chr2-167744129-4	chr2	167743623	167744623	+	990.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52946.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.69596128469438	4.20623775533068	4.29190705575509	4.61523014001481	4.27497095757511	4.31416872946933	-0.0296752034801917	0.950726371538117	0.988495627316711
Merged-chr8-35645582-4	chr8	35645082	35646082	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-56562.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.78095951956761	3.75756342001007	3.99773797903323	3.8404240569358	3.65038329795342	3.66821655611037	-0.394145761916722	0.462042038198554	0.815107818354545
Merged-chr1-37505391-1	chr1	37504891	37505891	+	580.0	f0_balb.idr	intron (NM_173870, intron 2 of 15)	intron (NM_173870, intron 2 of 15)	-16786.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	4.1196391431941	4.39656326413463	4.59725066301595	4.31833229817401	4.26941998111429	4.46727597920763	-0.0742507408282816	0.873472094906657	0.970409437516545
Merged-chr11-63914518-4	chr11	63914018	63915018	+	938.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	7766.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	2.65572196381597	2.79338309140067	2.81589159612991	2.80427533515675	2.96791584042541	3.22989222376132	1.24176912957627	0.0906938786286749	0.400661335435879
Merged-chr10-80173734-3	chr10	80173234	80174234	+	898.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152857)	TTS (NR_152857)	790.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	5.98957919431889	6.25241628000905	5.70321516651036	6.22945706905175	6.38445925959541	6.12214883357795	0.407051290405475	0.198242230942712	0.58648010923278
Merged-chr17-42832468-2	chr17	42831982	42832982	+	980.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 5 of 17)	intron (NM_009847, intron 5 of 17)	43942.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.16296957067353	3.26451319892131	3.38182225227578	3.42636002227611	3.33864801801178	3.55787210824047	0.670666608264851	0.269425997545505	0.666519946596296
Merged-chr2-24973454-2	chr2	24972954	24973954	+	554.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001031808, exon 2 of 2)	3' UTR (NM_001031808, exon 2 of 2)	1644.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	2.89481816686206	2.78572604990445	2.9041943529489	2.91962931244414	2.79188183062254	3.1483995942408	0.451435920307625	0.523256874906823	0.84810483758784
Merged-chr4-148160617-1	chr4	148160117	148161117	+	1000.0	f0_c57.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-51.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	3.76167032127349	3.07433465912818	3.29436091557843	3.49181782833444	3.19563742065519	3.53650724391982	-0.00135864261849748	0.998418776998825	0.999665481732462
Merged-chr7-140957021-2	chr7	140956521	140957521	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-1060.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	5.1491140069687	4.90551244796104	5.00772080346274	5.14658699403629	4.78083143936816	5.57278889366375	0.352993614808431	0.402149944550022	0.77787096574423
Merged-chr7-16002394-4	chr7	16001915	16002915	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-2920.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	6.07460209788737	6.28277253198394	6.13379990444702	5.74669127489277	5.71145401280099	5.47290364897832	-0.898102208036801	0.00369381116805818	0.0490276981451244
Merged-chr8-26015537-4	chr8	26014927	26015927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008033, exon 1 of 9)	exon (NM_008033, exon 1 of 9)	174.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	6.84130851889025	6.81451968840374	6.69142294100025	6.57126564128173	6.29658319422515	6.41856569056046	-0.570105130475541	0.031112599437809	0.21352830534652
Merged-chr2-90747685-2	chr2	90747185	90748185	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018828, intron 2 of 16)	intron (NM_018828, intron 2 of 16)	2315.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	2.88526581064664	2.74259865344567	2.92926810904837	3.02838010188884	2.86765948470816	3.17381559377852	0.822136282241523	0.241844775418615	0.638862793574907
Merged-chr10-121626511-4	chr10	121625995	121626995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081056)	promoter-TSS (NM_001081056)	-163.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	7.87616714959629	8.09768211686574	7.40116615970247	7.83500323444276	8.0315880522955	7.53533675888268	-0.0130521984826427	0.963124163926175	0.991042187277023
Merged-chr12-102401235-2	chr12	102400735	102401735	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 8 of 13)	intron (NM_011175, intron 8 of 13)	38578.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.27033058040177	3.09742717415169	3.59664655584613	2.99236578292436	3.2603015094276	3.25235142370503	-0.634226369509361	0.347417584062226	0.735497468013591
Merged-chr10-40300890-4	chr10	40300386	40301386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	CpG	1300.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	6.2119695966765	6.26022014286457	6.43668553204549	6.50259664430872	6.60697567947281	6.03579305492163	0.194090248059994	0.522418469508573	0.84761564078759
Merged-chr4-9073972-4	chr4	9073458	9074458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-195335.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.00247320275063	4.31527927000455	4.04349843662415	4.61959117921024	4.19005252558966	4.35262270955966	0.706700799503069	0.150263786210872	0.517246479850651
Merged-chr9-114329954-4	chr9	114329438	114330438	+	786.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007535)	promoter-TSS (NM_007535)	-197.0	NM_007535	12046.0	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding	2.54106840766759	2.55863218604056	2.62355389114466	2.29095401293725	2.36188923431594	2.63592202436507	-0.862159494552854	0.298979116393413	1
Merged-chr19-46395234-4	chr19	46394730	46395730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	CpG	505.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	6.72880950689114	6.93448090796613	6.75645484951398	7.21184309524921	7.28919916682224	7.18781718716988	0.637283503191547	0.00880579306745332	0.0921717769934958
Merged-chr8-25053002-4	chr8	25052491	25053491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 9 of 11)	L1_Rod|LINE|L1	-14029.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	6.79242516554482	6.54174742060823	6.47181066109077	6.21517685765313	6.41310291679014	6.38169878578613	-0.443678793174224	0.109496008741941	0.442183295982202
Merged-chr4-108328275-4	chr4	108327768	108328768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027250, exon 1 of 3)	exon (NM_027250, exon 1 of 3)	116.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	7.98614218737305	8.12043431367846	7.72107216874143	8.02361059111891	8.27211570046206	7.50634722626937	0.0355530029911147	0.899118476507356	0.976490898560649
Merged-chr6-97866787-4	chr6	97866288	97867288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	59730.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.52138121071996	6.28198123408446	6.52086911077091	6.60129334887935	6.75542001028787	6.59727509062204	0.347050789554836	0.195098336935968	0.582787221560878
Merged-chr8-84391034-1	chr8	84390534	84391534	+	663.5	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-24330.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.81522634664493	2.81661931367525	2.89565306564364	2.38385174199833	2.47405987371844	2.73087683949687	-1.82511778053063	0.028464733080416	0.201986483895212
Merged-chr4-152158270-6	chr4	152157772	152158772	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008236)	promoter-TSS (NM_008236)	-595.0	NM_001301805	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	2.8485911682222	2.68022296428935	3.00565826301232	2.60600415924127	2.47925028748623	2.53051116695853	-1.77810659883649	0.0269733767154712	0.19557151161254
Merged-chr18-34378188-4	chr18	34377684	34378684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-4769.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	5.39062519138964	5.44790888724297	5.51865772435123	5.34819159040666	5.29423931900727	5.71077533096265	0.00138508624568562	0.996809911449119	0.999223669231009
Merged-chr6-85137555-5	chr6	85137058	85138058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011467, exon 1 of 3)	exon (NM_011467, exon 1 of 3)	206.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	6.83335609569905	7.01569180896246	7.02001184195383	6.60723531686939	6.69405642451836	6.93246648424583	-0.32962850453642	0.202419847913863	0.592289999128483
Merged-chr6-121245849-4	chr6	121245349	121246349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-57.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	6.24549808937764	6.46866030345354	6.29475519765597	6.57724750307694	6.72728352266048	6.11627342322496	0.279557798538752	0.358974454520446	0.745248163965501
Merged-chr5-44050381-4	chr5	44049866	44050866	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	44402.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	4.45413671858185	4.30038484544681	4.20094330236548	5.11330070503293	5.31896455506971	4.57364199572033	1.68630465458242	0.000272769623986439	0.00643592149273011
Merged-chr3-96001219-4	chr3	96000715	96001715	+	980.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 14 of 14)	intron (NM_013841, intron 14 of 14)	-5376.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	5.53201256849078	5.58381983113351	4.89725873594971	5.20573216246614	4.94560187879013	4.83977505090072	-0.764798028125388	0.0634600324784119	0.328198295883131
Merged-chr14-103488936-3	chr14	103488458	103489458	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24383.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	3.55236575135376	3.40287865153461	3.84369122464809	3.6689622020206	3.58653356351024	4.08853643904932	0.623054589102565	0.293374689063394	0.690262155452762
Merged-chr4-105164237-4	chr4	105163738	105164738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6891.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.16036457989991	5.85151772717443	5.83122856980729	6.06479480299279	6.10941072038625	6.17044011937739	0.258266776368914	0.390502175436057	0.76961112307546
Merged-chr2-27765101-4	chr2	27764619	27765619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54536.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.77899300331111	5.56722575513337	5.20964750617221	5.26431031867915	5.30708992200776	5.6104047829109	-0.300903088027748	0.411924828978055	0.784137658017569
Merged-chr15-68260190-4	chr15	68259687	68260687	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1331.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.90131868446361	5.80528105087672	5.78455447535048	5.90417345649896	5.89616123864368	5.65710883460878	-0.00159604417275745	0.995848819223001	0.998961028701257
Merged-chr16-38742940-2	chr16	38742440	38743440	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285793, intron 1 of 6)	intron (NM_001285793, intron 1 of 6)	681.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	4.1385060127775	3.78897932962218	3.76663927729557	4.24128479622832	4.11151537762858	4.04938749028843	0.64780175316001	0.210812470753574	0.603098348627511
Merged-chr4-59444204-1	chr4	59443704	59444704	+	620.0	f0_balb.idr	Intergenic	ID4|SINE|ID	-5571.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	2.92650385746727	2.87241299391312	2.92723538416117	2.78458965832558	2.56399617417555	2.6906552975711	-1.22806641734147	0.0999865018064538	0.421804747632905
Merged-chr10-112990927-4	chr10	112990420	112991420	+	990.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61894.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	5.45499351971731	5.86884839039725	5.63355122911179	5.79876180942411	5.52215412519436	5.4637349174642	-0.114689608579884	0.738219021862651	0.933990122267208
Merged-chr17-26242931-5	chr17	26242451	26243451	+	853.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	1291.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.14214412524702	6.7087785006238	7.06673396885132	7.45295203975191	7.58643594871161	6.95846876560993	0.577282464406637	0.0460894538044252	0.271482443050586
Merged-chr7-45591001-2	chr7	45590501	45591501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15825.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	5.06843942764534	5.09421374896349	4.75874852973406	5.35133235970065	5.21638302901777	5.389463994655	0.66040955061794	0.0765383493389542	0.364316766331941
Merged-chr13-56134972-4	chr13	56134467	56135467	+	906.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159513, intron 1 of 8)	CpG	583.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	7.22743285120012	7.00309858471744	7.02135869774252	7.45229861185519	6.65039315315361	7.025649459115	-0.00670757545909503	0.982334560161405	0.995992226862322
Merged-chr18-79981132-3	chr18	79980631	79981631	+	990.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65764.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.13749909366955	4.04908460847761	4.01269307032164	3.45090057299547	3.59308935330781	3.56016675290002	-1.7763175890511	0.00137836542762582	0.0231652253084002
Merged-chr19-46057172-4	chr19	46056649	46057649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346801, intron 1 of 13)	CpG	610.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	6.82594654682089	7.17742892820889	7.17279409434868	6.96363924133893	6.93298956258039	6.9776146243771	-0.166771733756267	0.512689433972301	0.84208176908739
Merged-chr1-191117382-1	chr1	191116882	191117882	+	652.0	f1_c57bl6.idr	Intergenic	Intergenic	18968.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.18409523635117	4.16414241938163	4.32811314300639	4.00753195490843	4.02517696273552	4.43481075961625	-0.176594562490821	0.717421695448004	0.927077249271794
Merged-chr8-61921883-2	chr8	61921383	61922383	+	750.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6204.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	6.01601847949342	6.07885082136488	5.87750943800526	5.89921124282746	6.07634791199684	5.54788934651606	-0.213805527693885	0.509412002686652	0.840296625810954
Merged-chr1-180298928-2	chr1	180298428	180299428	+	640.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31548.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	2.69363709472326	2.48814342198267	2.45366548955407	2.76541116927291	2.41576645131329	2.84674982619301	0.74280826011426	0.36922534385192	1
Merged-chr9-106171649-2	chr9	106171141	106172141	+	823.5	f0_balb.idr|f1_balb.idr	intron (NM_029896, intron 1 of 8)	intron (NM_029896, intron 1 of 8)	712.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	6.23061913227945	6.18714957431604	6.59092295133863	6.13854463906139	6.01072951152811	6.09711486558437	-0.432697171206131	0.143876081405627	0.506350128485222
Merged-chr11-118465158-3	chr11	118464627	118465627	+	750.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-10132.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	6.03428389894036	5.81309547689991	6.26126532677016	5.74408160411169	5.75149117931013	6.01912540835634	-0.357017659760013	0.26323481813483	0.661245508491251
Merged-chr1-85086612-1	chr1	85086112	85087112	+	825.200012	f1_balb.idr	Intergenic	Intergenic	23241.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	3.14621883568236	3.40363976185906	3.09669379895369	2.56873658725891	2.46824891324877	2.86479445493862	-3.32710177290633	0.0367272677902068	0.235930093282446
Merged-chr9-90068942-2	chr9	90068442	90069442	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312649, intron 8 of 10)	URR1A|DNA|hAT-Charlie	14675.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	3.05152099824713	3.37255847927484	3.35640401572541	3.6921025293001	3.52660978866154	3.84223272583302	1.57988617429812	0.012246366053286	0.115873962538302
Merged-chr9-21235518-4	chr9	21235020	21236020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110307, intron 2 of 5)	intron (NM_001110307, intron 2 of 5)	3812.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	6.60057082749961	6.44346264523986	6.95936677353972	6.92071327298599	6.93363907757144	6.88101741202664	0.37313984805997	0.172033080098434	0.55057560520216
Merged-chr6-47889026-4	chr6	47888531	47889531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146175, intron 2 of 7)	intron (NM_146175, intron 2 of 7)	11476.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	3.72197126617923	3.78116669237942	3.81548292753015	3.57203097737172	3.5494584661515	3.51837634741609	-0.779390285216053	0.155244874363799	0.524871622691602
Merged-chr9-118877209-1	chr9	118876709	118877709	+	587.0	f1_c57bl6.idr	exon (NM_133721, exon 26 of 28)	exon (NM_133721, exon 26 of 28)	-49327.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.39809584086155	2.49060471340112	2.93578618925537	2.26244339448041	2.10245527853371	2.28337403191464	-2.98874956552242	0.00349157128144611	1
Merged-chr12-72762340-2	chr12	72761860	72762860	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	1149.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	5.54948892560888	5.71503550921913	5.62351695343265	5.56422732897387	5.67847690613774	5.81355381360559	0.0962971362869545	0.762421631077466	0.941561416958418
Merged-chr6-134245855-4	chr6	134245334	134246334	+	902.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 5 of 8)	L1MEf|LINE|L1	-150495.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.24203607513615	4.93760492563845	4.79535746139544	5.25007008595402	5.36215310553959	4.77829428050235	0.318689642773559	0.443582576902006	0.803868432078016
Merged-chr11-95850471-1	chr11	95849971	95850971	+	689.0	f1_balb.idr	Intergenic	Intergenic	7226.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.7224007046145	7.33290290646184	7.43349272245467	7.6637113606179	7.79341549807269	7.27364363447272	0.138062632057383	0.602942929157364	0.882476565923659
Merged-chr17-5801361-2	chr17	5800861	5801861	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045079, intron 2 of 2)	RMER5|LTR|ERV1	1871.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.29719398982128	5.23921817437446	5.16607324930555	5.41560737024335	5.5154506680663	5.23099135472849	0.323923028424195	0.350388822085614	0.738366841617277
Merged-chr4-147868657-4	chr4	147868144	147869144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010244)	promoter-TSS (NM_010244)	75.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	5.63797681049586	6.10618080340602	6.20594055474605	6.00394115411764	6.2338303524035	5.93928236101079	0.125388982978904	0.703320378597533	0.922108924938678
Merged-chr2-173534721-4	chr2	173534173	173535173	+	954.255981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12081.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	4.27393831883687	4.14896579075994	4.27635845310486	4.44498024165061	4.5569909477492	4.55779048849182	0.754433573934424	0.0864383830386063	0.389424046397112
Merged-chr15-95825079-2	chr15	95824579	95825579	+	648.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	4993.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.80074234140805	7.60487862425764	7.54484732666471	7.59581080600492	7.97595565824097	7.42262659170465	0.0565162219618112	0.827071526580274	0.959351941492659
Merged-chr2-17946295-4	chr2	17945783	17946783	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50675.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	3.57938783379918	3.70440456737342	3.43080504620213	3.69705216274424	3.26935640483985	3.26051113090886	-0.555231649168823	0.376708323258876	0.759336465825071
Merged-chr6-86405231-3	chr6	86404724	86405724	+	782.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164078, intron 1 of 11)	intron (NM_001164078, intron 1 of 11)	1005.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	6.77619393498106	7.17846214420732	6.48533410185068	6.75411393627312	6.90014049725296	6.54529257885237	-0.168251807437187	0.579740104294002	0.872595003519464
Merged-chr3-116423619-4	chr3	116423110	116424110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001080818, exon 1 of 16)	5' UTR (NM_001080818, exon 1 of 16)	422.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	6.50039011565757	6.33700424505411	6.44402840294028	6.62928948335361	6.44820588422726	6.57367807645718	0.196031799286033	0.461487169519614	0.814992635038861
Merged-chr5-121389122-4	chr5	121388613	121389613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3498.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	7.30287914525676	7.23678781138135	7.34430627740032	7.2459697993085	7.78624367665698	7.48575183025019	0.351888854207609	0.170284121002196	0.547643657769783
Merged-chr11-118452705-2	chr11	118452205	118453205	+	659.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001204129)	TTS (NM_001204129)	2290.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	3.90745283514021	4.17826546422402	4.39551230172418	3.84389915227623	3.9450587624233	4.07955788932411	-0.616976583862583	0.229515314085734	0.625143548215841
Merged-chr4-126205739-2	chr4	126205239	126206239	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3029.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.79010034404156	3.61354420097332	3.98852748516484	4.12032350300482	4.13957152156916	4.10420580229317	0.997105373470486	0.0519059580113797	0.290880317498039
Merged-chr11-34070864-1	chr11	34070364	34071364	+	542.0	f1_c57bl6.idr	intron (NM_010696, intron 6 of 20)	intron (NM_010696, intron 6 of 20)	23936.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	4.79151983799301	4.71376347354588	5.26305062318179	4.84781764431424	5.04910841063287	5.20732382984418	0.230695379344041	0.576247508656273	0.871585692229598
Merged-chr7-45081275-3	chr7	45080748	45081748	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	10965.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	4.4253537807619	4.8964295176168	4.99975596981052	4.37256824117478	4.65735159235321	5.0312399305705	-0.193908563306034	0.680077458513471	0.914139397449033
Merged-chr16-31663970-7	chr16	31663486	31664486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252434)	promoter-TSS (NM_001252434)	51.0	NM_001252434	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	7.31238554043312	6.3804085747767	6.49391491654469	7.27816994246817	6.31890594316734	6.17069501367407	-0.166948228084448	0.811703672009351	0.955306974300267
Merged-chr7-144932947-3	chr7	144932461	144933461	+	833.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 4 of 4)	intron (NM_007631, intron 4 of 4)	6964.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.20359600948117	5.40248046178406	5.56193721424818	5.00971720017652	4.97761186817725	5.25590662743022	-0.638183105510184	0.0811393289357765	0.376853451253835
Merged-chr10-80569153-2	chr10	80568653	80569653	+	783.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_078477, exon 2 of 2)	exon (NM_078477, exon 2 of 2)	-7593.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	2.37620071970559	2.54400764531114	2.51415808002935	2.51392905298968	2.4645270867296	2.71100143635425	0.489003889183066	0.538783477198393	1
Merged-chr1-87650184-2	chr1	87649684	87650684	+	616.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	RMER15|LTR|ERVL	29872.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.88823494321766	6.98643891505654	7.00833878831106	7.27260206865589	7.11473003594065	7.32877610367995	0.419803070954121	0.0805919413637184	0.375617221586976
Merged-chr8-61224453-2	chr8	61223953	61224953	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021506, intron 1 of 11)	CpG	282.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	3.9462510208295	3.72958975231826	4.00051814405792	3.47412511329949	3.3613490850581	4.15361774085643	-0.594674304372372	0.344839737201853	0.733368210920794
Merged-chr4-88438915-4	chr4	88438382	88439382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	44.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.94739243431244	7.04944967475902	7.22701735858682	7.31693780200732	7.65083786729549	6.95815040372644	0.413686291195456	0.142624501349288	0.504056214248708
Merged-chr11-113747367-4	chr11	113746877	113747877	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	3783.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	6.29651801240095	6.33765500772202	6.26561308958065	6.19103053568639	6.49346081072345	6.4400366136884	0.134588712578147	0.62850777545899	0.893765060420619
Merged-chr11-32324766-4	chr11	32324226	32325226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23085.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	4.00576114577077	3.86492056696116	3.70780326853904	3.44373519172355	3.84503267171839	3.83055159691697	-0.475310340956386	0.402560461959791	0.778095912071135
Merged-chr8-60883665-4	chr8	60883165	60884165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-6728.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	3.9652660891944	4.4313435894243	4.41280217182963	3.85175728374742	4.1551985184572	4.35667836080016	-0.415412878211725	0.42492639667582	0.792848465017231
Merged-chr12-112941192-2	chr12	112940692	112941692	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316724, intron 1 of 4)	intron (NM_001316724, intron 1 of 4)	950.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	4.12073380588636	3.91742471111321	4.01160726232887	3.83406201713067	3.84550079565958	3.83106051444545	-0.560809630347565	0.267906835762158	0.665075242857499
Merged-chr5-67297610-4	chr5	67297120	67298120	+	870.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9335.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	6.03469900912588	6.18755022609609	6.00995184746627	6.04408611325037	6.44943728812262	6.18241226827174	0.273123917759562	0.362141541530423	0.747675323428227
Merged-chr18-8678021-4	chr18	8677518	8678518	+	927.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-534838.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	4.26565020562365	4.41014774763064	4.33710427619948	4.88628145933659	5.10196953459261	4.71492285728236	1.3926888444194	0.00108872446429788	0.0192459284523684
Merged-chr3-96227582-4	chr3	96227081	96228081	+	975.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	6509.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	7.09299878829668	6.98318227633272	6.92591222140352	6.94802500279774	7.20539380549733	6.77258939899395	-0.00831757989108369	0.974596774272357	0.994296985713596
Merged-chr8-11103095-2	chr8	11102595	11103595	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94665.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.34090298194002	4.19862820347693	3.91797989808451	3.75871040926671	3.76527199501903	3.59459800716168	-1.41331943325335	0.00920231572361607	0.0950361532494285
Merged-chr11-51923079-2	chr11	51922579	51923579	+	633.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44552.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.09174758005357	6.07599921145894	6.36197546953948	6.01887657733074	6.05897737189997	6.14971233741369	-0.169764634041323	0.559299468123518	0.864901733108576
Merged-chr15-12321438-4	chr15	12320928	12321928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-68.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	8.4375786032513	8.79936554390728	8.3294599535925	8.47420070069925	8.16776837862337	8.3363685883291	-0.295737440339542	0.21539835637666	0.608884900801139
Merged-chr13-113610347-3	chr13	113609833	113610833	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	8231.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.66383359402289	4.56801504035629	4.80121990967324	4.7186225915788	4.45320964202464	4.22517259516001	-0.455200989270847	0.308234803528078	0.704294857534169
Merged-chr4-155575200-2	chr4	155574700	155575700	+	914.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	MTD|LTR|ERVL-MaLR	11385.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	2.82945379437462	2.88791479809083	2.91756715892232	3.29563259268193	3.01235477587749	3.05339401967636	1.16542557363437	0.0904399561605694	0.399981431974954
Merged-chr9-85324563-4	chr9	85324099	85325099	+	857.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001160378, exon 3 of 3)	exon (NM_001160378, exon 3 of 3)	2525.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.79049829933407	5.62712328762985	5.53652221593648	5.86640594505261	5.92356006153608	5.50892506632923	0.237447828590243	0.472441881210649	0.820550293768681
Merged-chr10-100495271-2	chr10	100494771	100495771	+	695.31665	f1_balb.idr|f1_c57bl6.idr	intron (NM_146009, intron 6 of 52)	intron (NM_146009, intron 6 of 52)	6982.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	5.61449650141845	6.27692686474288	5.94730640261242	6.49965792754032	6.6568336144827	6.05809427645111	0.76344807251685	0.0284605513767528	0.201974034879049
Merged-chr2-155019908-2	chr2	155019408	155020408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	6338.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	2.57265232365392	2.67631031018671	2.58693731906943	2.75963475798624	3.12812634899403	2.85684377372632	1.6784501295858	0.0309030741646992	0.21275715663547
Merged-chr5-104986878-4	chr5	104986362	104987362	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4145.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	4.67888555940407	4.60265014811623	4.79206032981827	4.85725409732839	4.58419813212729	4.85712186083055	0.178133240256867	0.662764902124898	0.906804932599005
Merged-chr7-16207700-4	chr7	16207214	16208214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14279.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	5.57568095530252	5.58216333340088	5.3252982353677	7.58388344770285	7.75563013318075	7.30806926300662	3.33225628003822	5.74757400240528e-27	1.44365615308739e-23
Merged-chr2-102989972-3	chr2	102989442	102990442	+	885.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83571.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	5.60459218536174	5.69713419704033	5.82737188957649	5.34082597863382	5.42937990208044	5.79371888077905	-0.342422065361447	0.311662201222344	0.706631105711982
Merged-chr2-27738775-2	chr2	27738275	27739275	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	28192.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.2468455059229	6.04699610882786	6.77626445882313	6.2091761589259	5.88095815803716	6.34786520527992	-0.385955622357527	0.260014995829991	0.657579648868986
Merged-chr13-24699575-2	chr13	24699075	24700075	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	60927.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	2.97271448817802	2.86169316863026	3.14878470991734	3.02009336718698	2.62502892766341	2.93244636127005	-0.618310978687078	0.404190627483599	0.779435115494192
Merged-chr11-54730094-2	chr11	54729593	54730593	+	678.25	f0_balb.idr|f0_c57.idr	intron (NM_178626, intron 3 of 5)	ID|SINE|ID	57610.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.06122287649262	5.74463572024802	6.41619571602804	5.43341589971223	5.59350950984744	5.96470897845309	-0.743192854590925	0.0393176118211215	0.246128486639473
Merged-chr5-77309415-4	chr5	77308744	77309744	+	868.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019836, exon 1 of 7)	exon (NM_019836, exon 1 of 7)	842.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	3.26445582800712	3.55002385384053	3.32776733664712	3.3104500551128	3.29693593511974	3.39930592990769	-0.223746800698032	0.713812261349892	0.925599802465018
Merged-chr13-58117841-4	chr13	58117349	58118349	+	903.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4202.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	3.16515187897244	3.11483963384166	3.27623040464945	3.12270106446051	3.3642950930722	3.29145573197264	0.348304064272245	0.58147404041503	0.873298754324848
Merged-chr9-64447105-2	chr9	64446605	64447605	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	61479.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	2.80479631581682	2.79680204194	3.03853573220693	2.88840574353143	2.80284037511996	3.21886040933669	0.454399983295908	0.527734545619808	0.850108008834301
Merged-chr16-36639984-4	chr16	36639500	36640500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	26077.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.14624451717526	6.21193387646692	6.58516940536742	5.87187001703212	6.24157919996123	6.11378835653644	-0.385208093533804	0.216796062408566	0.610379873996397
Merged-chr7-80075051-4	chr7	80074704	80075704	+	996.357178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	53.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	6.42212264574433	6.2448251705751	6.35843347571678	6.13875813644754	6.06871360816458	6.2228176377818	-0.342205890058253	0.219003395588988	0.613128894826908
Merged-chr17-74020078-2	chr17	74019578	74020578	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27838.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	3.07589874878491	3.33759653891714	3.26463731407924	3.32966302385271	3.32621249655568	3.33626506913649	0.402015645542207	0.518271932145032	0.845156513047069
Merged-chr13-37345336-4	chr13	37344869	37345869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010745)	promoter-TSS (NM_010745)	24.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	8.27785200424804	8.22700435294086	7.97856501147261	8.20596767927493	8.44944940482342	8.06467894324269	0.117839683237677	0.612055287008528	0.886473391147181
Merged-chr18-65600077-4	chr18	65599578	65600578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	-6605.0	NM_001361052	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	3.74726473579255	3.70911263929087	3.41456074580839	3.47222122244021	3.22895784440452	3.24389100105648	-1.20161102008436	0.0521602822153267	0.2918534572371
Merged-chr3-122246206-2	chr3	122245703	122246703	+	980.166626	f0_balb.idr|f0_c57.idr	intron (NM_008129, intron 1 of 6)	CpG	646.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	6.76442456284033	6.85424739265231	7.02357278322095	6.6406990712005	6.63958705490552	6.83833279397422	-0.274437973585857	0.286259416860993	0.683552590201731
Merged-chr17-15830308-4	chr17	15829823	15830823	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.74750405939309	2.64106462809812	2.80710737220905	2.67756505504887	2.62147772968874	2.81992340126765	-0.143543995040316	0.845665843600578	0.963850894494439
Merged-chr17-26252033-2	chr17	26251533	26252533	+	554.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	-877.0	NM_025881	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	5.24585836999	5.20121496718291	5.03542104210156	5.48490288816869	5.15872637999047	5.10123982990452	0.186005100546161	0.613354372015029	0.887185353929309
Merged-chr4-129855318-7	chr4	129854811	129855811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34603.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.06838511132716	6.22540409301098	6.25062485190121	6.24430798747369	6.0917110236428	6.38573771881624	0.0941769504524438	0.742727699899519	0.935362285201763
Merged-chr10-127742089-3	chr10	127741604	127742604	+	954.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198035, exon 2 of 2)	exon (NM_198035, exon 2 of 2)	2566.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	3.71366376490245	3.38209919812938	3.50663541230941	3.28841596351255	3.20843567180435	3.5770863020426	-0.693695149491441	0.262462249507533	0.660465700629734
Merged-chr16-3254866-2	chr16	3254366	3255366	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-337532.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	3.24546560897339	3.3872860259447	3.22282003653381	3.28290267730145	3.33358804662384	3.81222751831445	0.758795704007499	0.23621734551941	0.632609362278051
Merged-chr9-107724945-4	chr9	107724428	107725428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14453.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	6.85798628096626	6.91877500253296	6.90284444128705	6.87434507216435	6.84304856711581	6.71914817307115	-0.115942418269612	0.636635894772003	0.89720767300409
Merged-chr3-87509327-4	chr3	87508833	87509833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16245.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.82804609962328	3.62499541027345	3.27135491503465	3.43031361004343	3.28786202848744	3.68504934926504	-0.455980285805498	0.474331448238457	0.82139231300766
Merged-chr12-85598244-4	chr12	85597731	85598731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205052)	promoter-TSS (NM_001205052)	-874.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	8.23230441559545	8.09769337143173	8.16804867726925	8.04645448164258	8.21732433049968	8.03638889044428	-0.0850969040367205	0.68719686642797	0.916995189464615
Merged-chr7-102248735-4	chr7	102248230	102249230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1388.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	6.8440469183354	6.6674158214207	7.15070173633597	6.92042213793778	7.08203919576961	7.3917623693954	0.375679623698649	0.181940149861964	0.564608863504393
Merged-chr1-36547921-2	chr1	36547421	36548421	+	628.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-669.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	3.77546045728957	3.83043755332927	4.3948508294575	3.69218258677417	3.82399278239164	3.86151995732559	-0.694749633837238	0.215481220884735	0.608899282194137
Merged-chr2-93461009-4	chr2	93460494	93461494	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	857.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.57329370896832	4.22471285322167	4.00294976038502	4.35876018902387	3.88415215576447	4.12567153845706	-0.438064010767964	0.403689304948426	0.778956905666449
Merged-chr17-88458269-4	chr17	88457772	88458772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	17568.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.65573978615066	3.46100166548306	3.88882537736473	3.55338998981387	3.53144715427067	3.7206952678482	-0.252190970712379	0.660223046277773	0.905906890165946
Merged-chr9-40319808-2	chr9	40319308	40320308	+	653.299988	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1515.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.94182475189832	5.82528413159425	5.19750464867596	5.01211847833879	4.81688885039436	4.69216274358246	-1.7172946140248	2.4855833394836e-05	0.000879712541521697
Merged-chr6-137824880-2	chr6	137824380	137825380	+	972.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70303.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	4.93295307966564	4.85967723536989	4.88504188199381	4.86283483700561	4.76218578263871	4.63391645079714	-0.297911935187805	0.445864078722717	0.805424390221004
Merged-chr18-46153247-4	chr18	46152775	46153775	+	873.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45543.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.11073390303988	3.17249728169076	3.0121252171886	3.33394834457696	3.30021756376602	3.20750660781631	0.762380945894959	0.234212981393155	0.630414497316978
Merged-chr14-25857239-4	chr14	25856646	25857646	+	770.3184809999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	14991.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	4.38907879905449	5.17264060108484	4.57640528174431	4.61125195330763	4.77621956011745	4.68618173812626	-0.17211440496852	0.714895427327579	0.926139574290012
Merged-chr8-126947941-2	chr8	126947441	126948441	+	657.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172762, exon 11 of 11)	3' UTR (NM_172762, exon 11 of 11)	-2020.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	3.39860828923411	3.61357998055347	3.55169603639615	3.28813787961338	3.5066018996716	3.67250051842939	-0.107995825548812	0.855834636522294	0.966258544020232
Merged-chr13-23433055-3	chr13	23432557	23433557	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-2040.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.90662248058264	5.81443673048787	5.90913913742125	6.15673782446363	6.51778318928551	6.23805708853945	0.763145007337078	0.0100825547222885	0.100968734304029
Merged-chr9-89988992-3	chr9	89988473	89989473	+	811.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 13 of 26)	intron (NM_001357743, intron 13 of 26)	-65294.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	2.96089032278403	2.883136984535	3.22395482752038	3.14374292557459	2.94812417200789	3.34782536804169	0.555205495877638	0.421315446489847	0.790226764066497
Merged-chr17-8165300-2	chr17	8164800	8165800	+	556.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-218.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	6.76808428135355	7.09609236047363	7.13297511348275	6.80797325938675	6.89199184075156	6.68512805137465	-0.310385466907876	0.238425323080166	0.635169824001231
Merged-chr13-81176277-4	chr13	81175787	81176787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	212213.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.38819387196461	3.5218961517435	3.57704888387101	3.38776925308632	3.37597527470459	3.19566733264548	-0.640607629030301	0.291286367627253	0.689011458553274
Merged-chr19-46589335-3	chr19	46588833	46589833	+	978.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053196, intron 6 of 11)	intron (NM_053196, intron 6 of 11)	-9773.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.3728024148068	3.44895452678588	3.79114568947905	4.53026294180583	4.66226928093732	4.63511751882523	3.55929598547536	2.05370691669456e-09	2.13873398153093e-07
Merged-chr16-49840226-4	chr16	49839719	49840719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15435.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.49083652930976	7.50895916980435	7.40211574348517	7.48847821667283	7.71953524200751	7.42684640540309	0.128539030378008	0.580176705124043	0.87276422265422
Merged-chr11-107466594-1	chr11	107466094	107467094	+	662.0	f0_balb.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	4126.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.05541078210271	5.83273824150831	5.94379062216953	6.32379246363348	6.12006559146987	6.07484345342187	0.39834513878873	0.177177737351655	0.558127164810064
Merged-chr6-32610885-4	chr6	32610384	32611384	+	904.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22692.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	3.30220078146016	3.56589832753333	3.42410954469506	3.46572974669466	3.37761021546834	3.32405403247108	-0.172779442594246	0.773160507664411	0.943981747443949
Merged-chr1-58723829-1	chr1	58723329	58724329	+	880.3333130000001	f0_balb.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6723.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	8.01857987035049	8.03694409192953	7.77135653721642	7.81772193836985	8.14231304052623	7.63323993434642	-0.0864132666275793	0.728338211255442	0.930478966998914
Merged-chr3-86103842-3	chr3	86103397	86104397	+	663.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 4 of 14)	RLTR20A4|LTR|ERVK	19463.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	3.84895817298188	3.68717856146997	3.73282882373787	3.66039408305436	3.60321525630111	3.53139671445526	-0.536464224135457	0.327049042976537	0.719317370353337
Merged-chr2-16334497-3	chr2	16333995	16334995	+	698.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21809.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.18778664588551	4.40956980598033	4.0810336181073	3.78729170543514	4.04519531840206	4.454084832091	-0.334115922180788	0.527877657428534	0.850219758590516
Merged-chr1-106760849-1	chr1	106760349	106761349	+	541.0	f1_balb.idr	Intergenic	Intergenic	-1107.0	NM_001316750	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	4.87837935914726	5.00586016321324	5.198516767515	4.96737139062588	4.6914366617716	5.07135798362548	-0.25703485168404	0.515634948939713	0.843838191196296
Merged-chr9-110783805-4	chr9	110783285	110784285	+	833.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14400.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	3.6886399473867	3.3415283721278	3.40653945955034	3.48585446369043	3.22257074281311	3.17875214802184	-0.715544570940276	0.259783423982743	0.657375816734121
Merged-chr1-165697723-4	chr1	165697238	165698238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	10356.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.79876555111503	5.77989665375803	5.99809504037554	5.78749663436481	5.81178002804086	6.10102453498386	0.0768169783870499	0.804777378591575	0.953651704501661
Merged-chr10-10469316-4	chr10	10468830	10469830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	2984.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.86582661715891	7.96373086910484	7.74242705816062	7.99701117672878	8.30099779513663	7.65908210461188	0.226180500030489	0.378700986646915	0.761226034470744
Merged-chr1-136672798-2	chr1	136672298	136673298	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10598.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	4.8868250083979	4.85149989798435	4.68714468602738	5.06960673082023	5.14971603217062	5.06040201507262	0.602813956476132	0.110529878883271	0.444247148071402
Merged-chr4-142031975-2	chr4	142031475	142032475	+	859.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145402, exon 3 of 3)	exon (NM_145402, exon 3 of 3)	14077.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	2.98930134583762	3.02442986438218	3.2042547760594	2.89016297844127	2.55249025351723	3.27526814397585	-0.593223113944661	0.463918082403318	0.816038286358001
Merged-chr6-38943220-3	chr6	38942711	38943711	+	892.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	24225.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.14560768081642	3.99759473117779	4.06100932962613	4.49188765415309	4.52669514156584	4.45406385133232	1.1428236706506	0.0121402867785775	0.115160240325862
Merged-chr13-95957411-4	chr13	95956919	95957919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65497.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	7.04903103628259	7.00706315439684	6.75682735085965	7.3077058681316	7.36163971812151	7.14569886835595	0.493377920332955	0.0467625779573121	0.27368787976873
Merged-chr16-27388410-4	chr16	27387919	27388919	+	986.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	-537.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	7.91921069767926	7.71337583074934	7.67360391683636	7.68023024884856	7.99052825321199	7.93847409216234	0.145541352146443	0.531057465091044	0.851378188817981
Merged-chr2-165055621-4	chr2	165055126	165056126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-10.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	6.88656541559741	6.52164212793422	6.82074887139707	7.48136471282796	7.42110236392977	7.25114451829603	0.972794383635131	0.000145423534047889	0.00387336793247654
Merged-chr13-45955946-4	chr13	45955460	45956460	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	9031.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.73107433942364	5.55606126515327	5.52914268355624	5.81595803343149	5.63476405608622	5.90258197058855	0.308489618733069	0.336123617247217	0.726163155755068
Merged-chr3-135628192-4	chr3	135627685	135628685	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	63362.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.76656963782478	5.68869720226766	5.79955926684721	5.79373959208147	5.87980556739991	6.20984503289883	0.380585637694403	0.226580744980213	0.621533610412359
Merged-chr11-115654232-4	chr11	115653743	115654743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 3 of 5)	RSINE1|SINE|B4	-25948.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	7.52200495954348	7.62027741736924	7.18656711883382	7.32277428101604	7.50689456806511	7.33992335918963	-0.10099538739167	0.684390496974637	0.915853993305035
Merged-chr9-110713152-3	chr9	110712623	110713623	+	805.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mur|LTR|ERVK	29487.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	4.61488504679996	4.64082595384485	4.76258704951964	5.22344129211135	5.10974331813383	4.86845999056301	0.921704189250239	0.018443702247469	0.153144753678016
Merged-chr2-153351529-3	chr2	153351029	153352029	+	938.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	5390.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	6.93801683650002	7.48258188968203	6.97616759740712	7.12168960442169	7.408925274429	7.04825699344187	0.0659851438569188	0.817191574881581	0.956754861188725
Merged-chr19-59042884-4	chr19	59042380	59043380	+	983.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	33189.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	5.68747121123317	6.02960461035196	5.45045623997359	5.71807797586525	6.07817976094894	5.38205629103815	0.0318375277899397	0.933185139926476	0.985356091252617
Merged-chr6-124874531-4	chr6	124873989	124874989	+	977.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013488, intron 3 of 9)	MTE2b|LTR|ERVL-MaLR	-10506.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	4.28347981585828	4.03547687637379	4.29920960390901	4.15251888876931	3.98232146331483	4.14326839320942	-0.332063901963547	0.490187077681668	0.830042606694236
Merged-chr11-98796562-4	chr11	98796091	98797091	+	740.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361932, exon 1 of 3)	exon (NM_001361932, exon 1 of 3)	1075.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	5.55651164658992	5.76469269518801	5.91328841094694	6.09818887693614	6.08563711974267	5.92711883416456	0.530314704231188	0.0851439785283483	0.386252608791229
Merged-chr1-171059433-4	chr1	171058907	171059907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010188)	promoter-TSS (NM_010188)	-4.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	7.02757110488706	6.86955168225213	6.78909040425821	7.18248123796108	7.0925213702841	6.89291154405222	0.249479073776589	0.323119555746087	0.716523928970614
Merged-chr18-62185806-4	chr18	62185324	62186324	+	789.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	5724.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.18279180270544	6.16731041847089	6.04296408667521	6.01968361793637	5.69662500932231	6.03642688893771	-0.38202269701026	0.206759166308248	0.597372784798965
Merged-chr2-44919653-2	chr2	44919153	44920153	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58031.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	4.73860532688733	4.96142201464345	4.70194178147257	4.51937917048049	4.37519788358027	4.56460451502496	-0.792803702439208	0.0578563259794839	0.310868315476699
Merged-chr7-15921952-4	chr7	15921414	15922414	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	457.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	7.13987597137442	7.13758747070359	6.94473144571377	7.25786810382438	7.29501639668673	6.91494391673666	0.1413513489378	0.57844589299936	0.872437129840066
Merged-chr14-122650217-2	chr14	122649717	122650717	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115889.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	5.67036673418694	5.65118332674755	5.78117646095386	5.86324844465675	6.00198948330669	5.62767742589714	0.280523364697988	0.375597095309811	0.758851065703868
Merged-chr11-63020841-4	chr11	63020349	63021349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16715.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	4.54335833084717	4.72485701250237	4.97322482893474	4.86499009389547	4.32826647703483	5.00427495624995	0.00615070043175044	0.989362933775442	0.997597007948949
Merged-chr7-25704907-4	chr7	25704418	25705418	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011577, exon 7 of 7)	exon (NM_011577, exon 7 of 7)	14135.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	6.28883658047649	6.92679387604556	7.30307841099582	6.75698999660856	7.02497005598713	7.04227805048927	0.0704249446313138	0.833834159567232	0.961104751385188
Merged-chr15-34356831-3	chr15	34356328	34357328	+	866.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256161, intron 1 of 3)	hAT-N1_Mam|DNA|hAT?	1044.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	3.10882415809856	3.02828466593739	3.18393761523916	3.07630583594236	3.04482148062939	3.19893907700485	-0.00451266711346219	0.994435944158359	0.998925876349431
Merged-chr12-21285577-1	chr12	21285077	21286077	+	604.0	f1_c57bl6.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	707.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	5.94671785745499	6.31737881920035	6.0796661504025	6.08944672376375	5.92979929222784	5.98073988210605	-0.219738792463389	0.466434649984415	0.817586753758551
Merged-chr9-21166260-4	chr9	21165761	21166761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	CpG	547.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	6.88844562425011	6.98415378299909	6.86187524072838	7.1363811377616	7.29888916571497	7.12561818965024	0.422798790201053	0.0791486928377938	0.371827260255598
Merged-chr8-25602140-4	chr8	25601632	25602632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-152.0	NM_001001735	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	9.19818989070208	9.52924772097894	9.02051523237367	9.01180379035584	9.27862122053938	8.78210786587372	-0.306591381588867	0.214409693710303	0.607538973573768
Merged-chr2-84670752-4	chr2	84670254	84671254	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037279)	promoter-TSS (NM_001037279)	-46.0	NM_001037279	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	5.80986362234997	5.98521768763626	5.62028407937761	5.95736353871788	6.13563916806999	5.7681498581453	0.263114994313545	0.411841504216702	0.784086669325325
Merged-chr11-69760235-2	chr11	69759735	69760735	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019871, exon 2 of 2)	exon (NM_019871, exon 2 of 2)	-1602.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	6.10780182033724	5.68333378016454	5.80508454599845	5.93194594688901	5.76248506291676	6.23997765791061	0.176223772573023	0.597227697184108	0.880302510795789
Merged-chr19-46598943-4	chr19	46598437	46599437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-169.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	6.09433734003798	5.99384161724171	6.08057292595124	6.11700065855123	6.30867916728257	6.34403791914236	0.345118330364166	0.223987686714506	0.618756596266412
Merged-chr5-138996125-6	chr5	138995559	138996559	+	993.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-11694	-1106.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.3548555022329	6.39320267438244	6.17352368619473	6.07259764385437	6.20131648313767	6.12521795029338	-0.3022613239151	0.281722318527118	0.679800211118652
Merged-chr18-38339975-2	chr18	38339475	38340475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-982.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.75991162634681	4.53414827032658	4.7102940474284	4.29660120687651	4.32117308563739	4.2704554039354	-0.937474805605788	0.031516791004754	0.215063846872335
Merged-chr17-35897406-4	chr17	35896915	35897915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033630)	promoter-TSS (NM_001033630)	-37.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	5.8231003918709	5.18651737530344	5.63907084304795	5.89859048711698	5.24794099255127	5.38132121808464	-0.0636901998007953	0.873863606007283	0.970492962848917
Merged-chr19-55649564-4	chr19	55649059	55650059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	52645.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.30351551967621	7.22063728516182	7.05068339425606	7.25737420040389	7.56328540596078	6.90644475717746	0.124346743900007	0.65412370682962	0.903689674374123
Merged-chr3-103170805-2	chr3	103170305	103171305	+	591.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	-850.0	NM_026602	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	3.56113533812947	3.64004514264553	3.80056424080518	3.58689731396446	3.34939781048346	3.51059781016582	-0.660680498542213	0.250455028284096	0.647808416195162
Merged-chr19-60895600-4	chr19	60895062	60896062	+	839.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	5813.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	5.82657075374167	5.99282236396457	6.23561154268905	5.84320925262423	6.16968872737607	6.45620309337936	0.261143887956488	0.426652011730186	0.793840707522572
Merged-chr19-6891311-4	chr19	6890808	6891808	+	922.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-18390.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	2.70237372948183	2.84053766214412	2.97605366831033	2.77942759938797	2.67612082895476	2.75225269119614	-0.552694695240638	0.449034608927668	0.807557692084064
Merged-chr1-165702792-1	chr1	165702292	165703292	+	547.0	f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	5302.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.0070469800471	4.97103225500837	5.45381980693642	5.21449709840634	5.42533539128563	5.28296990214827	0.339442321890903	0.367139509668791	0.752113401392775
Merged-chr1-152774774-4	chr1	152774272	152775272	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026369, exon 4 of 4)	3' UTR (NM_026369, exon 4 of 4)	8230.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	4.78817259226715	4.65621837381814	4.69866965278851	4.58929821606067	4.74489666433029	5.11169007836017	0.245359073333436	0.557906339202481	0.86443214373182
Merged-chr8-128709420-4	chr8	128708916	128709916	+	865.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 3 of 15)	B3|SINE|B2	23762.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.35964294503408	3.19425172773977	3.43739780119366	3.21970206536641	3.31571265594447	3.23107264817102	-0.28583621227564	0.644356012923671	0.900183224748554
Merged-chr7-28350684-4	chr7	28350193	28351193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	4.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	7.19800166011951	7.21850082414196	7.10171923646865	7.23977243334415	7.29266031509285	7.44428246023572	0.219359542886615	0.348058706356474	0.735982909356061
Merged-chr19-5661671-4	chr19	5661142	5662142	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	intron (NM_001164480, intron 1 of 16)	2065.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	6.34620131224522	6.42276894730967	6.51134357145477	6.60444398897346	6.933963544387	6.8402447806238	0.602880036403603	0.0241261253273923	0.182675422090375
Merged-chr16-91012051-4	chr16	91011541	91012541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164483)	promoter-TSS (NM_001164483)	-733.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	9.04526243050202	9.17396097681959	8.48267275405266	8.77558417911886	9.13568862545196	8.67295574297887	-0.0803882386280214	0.764336057485993	0.941979298344481
Merged-chr13-30674129-4	chr13	30673633	30674633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	14074.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	6.0034981103524	6.35812096842713	6.09640113328902	5.90462428551528	6.05116600274234	5.58908049280712	-0.497742479979746	0.12445088484756	0.472065895334892
Merged-chr3-144720303-4	chr3	144719836	144720836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-1.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	8.06200794528332	7.2049033261796	7.18204005190886	7.57442758578378	6.7526832036135	7.0265569044561	-0.576353948859155	0.109158485542857	0.441472696852825
Merged-chr3-103058309-4	chr3	103057797	103058797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010937)	promoter-TSS (NM_010937)	12.0	NM_010937	18176.0	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	7.7542420658654	8.08370137006609	8.0056372968662	8.12061669770976	8.15172487893632	7.89252780803608	0.155585605300609	0.498857729538491	0.834149631434403
Merged-chr5-124050582-4	chr5	124050082	124051082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18322.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.56118622606182	7.82623149526748	7.89726751503946	7.93816127048163	8.08856251307216	7.74688964666885	0.246065711818256	0.300555396823061	0.697311691851564
Merged-chr17-35210809-2	chr17	35210309	35211309	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5458.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	7.89603690383926	7.77135661057784	7.17305564021973	7.67779564809438	7.93952785657839	7.13503439045507	-0.0318680355617498	0.92049382653715	0.982382709366944
Merged-chr11-78213281-4	chr11	78212776	78213776	+	987.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009297, exon 29 of 37)	exon (NM_009297, exon 29 of 37)	19884.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	5.29219066714796	5.31829908433849	5.17861009275604	5.45006435420228	5.32559992420399	5.06504617718134	0.0589703744278187	0.868621627690851	0.969708434868159
Merged-chr15-100461192-4	chr15	100460679	100461679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7832.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	7.19152436053441	7.22948129535947	6.35913693609291	7.28037526551033	7.51924985744894	6.90128110082923	0.402582614236485	0.236165287443788	0.632555396218363
Merged-chr13-9125380-4	chr13	9124871	9125871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	31490.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.97139446244238	6.93365582681673	6.76026642269411	7.17960874789372	7.23142287477839	6.83496326020162	0.314017274499001	0.226814799439575	0.621797767256462
Merged-chr5-36579179-3	chr5	36578671	36579671	+	831.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	MIR|SINE|MIR	3226.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.22565298728504	4.10222463602148	4.26356140875172	4.42845721417873	4.22172067758922	4.09483577671014	0.175698021293548	0.708685777720658	0.92375127577894
Merged-chr8-104219992-4	chr8	104219474	104220474	+	865.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001141922)	TTS (NM_001141922)	28584.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	4.70632020779599	4.66053003724095	4.6053690503237	4.68047480615925	4.6728146213164	4.75132794607096	0.0892060713182159	0.824037556926731	0.958461473318254
Merged-chr7-107594048-4	chr7	107593552	107594552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-999.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	7.05490890773505	7.29380401976937	7.1670221806336	7.03675522434372	7.57998262391196	7.20020514608632	0.187662464759356	0.486029320560925	0.827641640456729
Merged-chr13-54218984-4	chr13	54218498	54219498	+	696.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26865.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	4.53225235957753	4.01066922956957	4.05125206232978	4.69789928884723	4.40091650123266	4.36883860413713	0.696042051736162	0.164141744677793	0.538327471962074
Merged-chr3-137870516-2	chr3	137870050	137871050	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	2875.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	4.25579869864685	4.1513645288993	4.0600636070305	4.12128065014641	4.10718731623083	4.51895250265621	0.247080968691773	0.611633885777202	0.886202416377889
Merged-chr2-165400417-3	chr2	165399910	165400910	+	735.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029021)	promoter-TSS (NM_029021)	-16.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	3.36930773510461	3.25653553742012	3.25894290846271	2.96443763906194	3.1376142943814	3.21662960268652	-0.801587810422816	0.215552350715546	0.608959358922323
Merged-chr8-14996219-2	chr8	14995722	14996722	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-14803.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	2.23822908693702	2.33441657975177	2.41811016714157	2.08453185259703	2.06757017818934	2.43006920707471	-0.90809959925276	0.322568247301065	1
Merged-chr5-120613397-4	chr5	120612869	120613869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029096)	promoter-TSS (NM_029096)	239.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	7.71113680417968	7.6815193312907	7.64101697332769	7.64624804394115	7.69073391112936	7.77672690353068	0.0343063387762325	0.873754925566853	0.970440430875665
Merged-chr2-32441672-3	chr2	32441172	32442172	+	834.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8785.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	3.2279325650391	3.2441354933063	3.21956211256423	2.976653673496	3.12554289001597	3.11737132904625	-0.673680723939197	0.296945750481994	0.693511179566253
Merged-chr2-128766884-1	chr2	128766384	128767384	+	862.0	f1_balb.idr	intron (NM_008587, intron 8 of 18)	B3|SINE|B2	-51419.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.09608263716762	4.20364843296728	4.34873364751575	3.94918410409106	3.94615967396415	4.41462779795989	-0.294462386120627	0.5582535269711	0.864595191540967
Merged-chr12-3429929-3	chr12	3429425	3430425	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	3068.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	3.71644123747316	3.81351410246069	3.90281697784182	4.04071092817296	4.19576020883606	4.20621088126147	1.03253300769814	0.0388189477290805	0.244330333028845
Merged-chr11-120796450-4	chr11	120795949	120796949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-54.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	6.39411785417989	6.29592569015812	6.27348739007287	6.2780213579029	6.3147571515476	6.02601386412347	-0.168828326638466	0.549870372596367	0.86050509437616
Merged-chr4-151842141-5	chr4	151841607	151842607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	19661.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	6.3567523988802	6.63068027314747	6.32469901420412	6.50044222664923	6.59810422035141	6.44255788506716	0.109600684916385	0.690651877318553	0.917915728386653
Merged-chr2-36217179-4	chr2	36216667	36217667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13259.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	7.01008709768522	6.74916885094825	7.14932733186348	7.8029731354606	7.59283953803279	7.359387228537	0.935219669315033	0.000349707348714787	0.00790503913932627
Merged-chr19-29571266-4	chr19	29570761	29571761	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081319, intron 8 of 25)	MTEb|LTR|ERVL-MaLR	48979.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	4.03407873926923	3.8360293719627	4.0646716681499	4.11210059932843	4.50195280752946	4.27275395390344	0.946411905795771	0.054603323096998	0.300134177817371
Merged-chr7-73533090-4	chr7	73532546	73533546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8700.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.56607492754	7.46884109624839	7.26822748575712	7.39832945311273	7.23765017051742	7.11342738428018	-0.277380550927113	0.253450631750072	0.650876272811414
Merged-chr2-159992446-4	chr2	159991956	159992956	+	902.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24197.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	4.59744218493278	4.60033543997734	4.25507035810396	4.51269872213195	4.45329221332152	4.5074757206658	-0.0394786436715728	0.928455681975669	0.983802612059568
Merged-chr9-89227963-4	chr9	89227449	89228449	+	899.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	URR1B|DNA|hAT-Charlie	16565.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.73797467120795	5.76340372473806	5.56970501948734	5.83057227760064	5.68004589207025	5.38462134821886	-0.0823983566602537	0.803845821399302	0.953557286986578
Merged-chr17-47760205-4	chr17	47759708	47760708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	22277.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.42384558765633	6.41149123906939	6.14348523243998	6.18210888185224	6.08964300471444	5.66274598209127	-0.554156774443169	0.0779580152469953	0.368689924557917
Merged-chr13-42866742-4	chr13	42866231	42867231	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302636, intron 1 of 12)	intron (NM_001302636, intron 1 of 12)	484.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	6.30704818460465	6.51959503696513	6.5053243877765	6.25932353526846	6.18212626937204	6.28761037990129	-0.3389533032678	0.216522387528556	0.610030018672362
Merged-chr14-46873935-1	chr14	46873435	46874435	+	567.0	f0_balb.idr	Intergenic	LTR50|LTR|ERVL	-9030.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.91669920808258	3.98227745905345	3.99173002384284	4.76058182083995	4.39924814387163	4.52557015605247	1.65204884289136	0.000519511429989068	0.0107960806859466
Merged-chr19-47436288-1	chr19	47435788	47436788	+	672.5	f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	28123.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.92208436726669	2.88389391255759	3.06513782225638	3.37576791699652	3.28312909862264	3.57614313274714	2.04155245921569	0.0026292857786944	0.038065747153787
Merged-chr1-184535807-4	chr1	184535278	184536278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21913.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.71855354996496	7.71984435805149	7.64923681670909	7.20517391132181	7.65758094310506	7.52560727658928	-0.315317468195878	0.194710001513753	0.582229434450918
Merged-chr8-10900410-2	chr8	10899910	10900910	+	579.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_102285, exon 2 of 3)	non-coding (NR_102285, exon 2 of 3)	488.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	6.26213468329967	6.21671269165366	6.03577916365936	5.89298033182935	5.89566984543716	5.74872366501792	-0.571797741542762	0.0526739631066085	0.293720353985704
Merged-chr3-103207257-2	chr3	103206757	103207757	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	35602.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	7.24339411917191	6.96838934683407	6.7360404521838	7.35332781235144	7.57854524807158	7.22315960434573	0.584159794870479	0.030657403782804	0.211696369623199
Merged-chr10-19956750-2	chr10	19956250	19957250	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	22224.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.49635216211103	4.52286014037262	4.51174260177298	4.34709368790989	4.24530062213438	4.31941207656138	-0.540966694828802	0.213424743410616	0.606366170987487
Merged-chr5-72656674-3	chr5	72656113	72657113	+	907.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081205, intron 1 of 5)	intron (NM_001081205, intron 1 of 5)	8817.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	4.67625371434067	4.95643603103098	5.02451958252176	4.53590027071621	4.6260476211263	4.52507460286465	-0.749252235363357	0.0709264388632679	0.349354592134896
Merged-chr7-110631528-3	chr7	110631032	110632032	+	797.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3875.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	2.82563713186702	2.54647055063077	2.67400779923744	2.44875307725395	2.31404204533871	2.55892490353488	-1.54026687874427	0.0655406741013351	1
Merged-chr17-34291187-1	chr17	34290687	34291687	+	798.0	f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-3416.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.75115880576175	5.18326487946073	4.65116026737264	5.94571886275968	6.36258908415119	5.56329359042027	2.12776937086411	6.1115466442982e-07	3.50952086389762e-05
Merged-chr11-79527508-4	chr11	79526998	79527998	+	979.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033711, exon 2 of 2)	exon (NM_001033711, exon 2 of 2)	3111.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	8.43225623579873	8.42773246541362	8.14924543951346	8.03872641102865	8.43743684072204	8.24481430698145	-0.130234532237398	0.575030661297495	0.87094931637326
Merged-chr11-114925169-1	chr11	114924669	114925669	+	540.0	f1_balb.idr	intron (NM_001347651, intron 3 of 3)	intron (NM_001347651, intron 3 of 3)	9217.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	3.5563788046741	3.67343181171172	3.67209635302834	3.39415844955947	3.29319088115625	3.58783926353398	-0.782748415825278	0.179057294271017	0.56042878847857
Merged-chr6-116682044-2	chr6	116681544	116682544	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-8208.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.47859190464733	6.29290531629188	6.25576609988787	6.34826326013731	6.56024200645186	6.52402903756261	0.213985326611761	0.436013872777478	0.799432425324322
Merged-chr15-76745275-4	chr15	76744775	76745775	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-21430.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	5.5822149039603	5.55517790782967	5.08826942335043	5.49708216620605	5.24477361874307	5.22651237333322	-0.216657313540173	0.556806232340324	0.863766974543676
Merged-chr12-31920847-2	chr12	31920347	31921347	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29398.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.63706818018393	3.61586456005364	4.16250082508404	4.35739604878347	4.50382610538105	4.56100542002244	1.92540778940332	0.000305256701588882	0.00707712444296676
Merged-chr5-124425189-2	chr5	124424689	124425689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	CpG	413.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	7.63666427693512	7.90332245889854	7.77619969429127	7.93100066027669	8.12640207112165	7.81550096026478	0.276602429381928	0.230661581933362	0.626381219532661
Merged-chr8-61909492-2	chr8	61908993	61909993	+	788.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6799.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.04181853700779	5.97009842026376	6.03082770613984	6.23411709406106	6.25082588036843	6.04597372882102	0.297000773724864	0.298242374086851	0.69500092474273
Merged-chr4-155250827-2	chr4	155250327	155251327	+	690.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001190445, exon 3 of 4)	exon (NM_001190445, exon 3 of 4)	861.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	4.16315539687592	4.22793042409659	4.62078463796017	4.13892357456216	3.90094043635551	4.33856539861033	-0.589666366513052	0.241240803643973	0.638385260200477
Merged-chr17-35394571-3	chr17	35394047	35395047	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_051981, exon 2 of 3)	non-coding (NR_051981, exon 2 of 3)	448.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	4.8054926930792	4.3884066867979	4.39777388438834	5.70490624805341	5.63784878287974	4.93147594947093	1.97098007013829	1.52719744926405e-05	0.000577351410078888
Merged-chr19-60874541-4	chr19	60874042	60875042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007452)	promoter-TSS (NM_007452)	-4.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	5.68845041130862	5.5011578298847	5.81992825436523	5.77956980079719	5.62349850508509	5.47645785991963	-0.0567632325801581	0.863060053651609	0.968167003113825
Merged-chr2-84627429-4	chr2	84626938	84627938	+	999.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22042.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.83537851685401	6.76857952916324	7.05171259024198	6.71646358007977	6.76879176258933	6.68312610717029	-0.244327962934817	0.338102651686847	0.728000347830431
Merged-chr16-36987695-4	chr16	36987185	36988185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	2782.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	3.74097889146457	3.96884587320952	4.02376126060766	4.03497351507035	3.89035600783122	3.62279442449452	-0.145425994626131	0.788221818147072	0.948904207939777
Merged-chr11-76622284-3	chr11	76621782	76622782	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-44543.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.99865384708224	6.50370021774489	6.35162509079027	6.32860820019847	6.47894075244294	5.95059006295925	-0.0311559179432185	0.923247681498324	0.982699256056545
Merged-chr7-34302097-4	chr7	34301549	34302549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16440.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	4.65067838796238	4.75190091471042	5.05156261151508	4.97720035141959	4.61619543172328	4.87656031694622	0.0164217028399326	0.968499731162534	0.992792165162521
Merged-chr3-138522543-2	chr3	138522043	138523043	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3648.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	4.77336541117859	5.13472197097977	4.97219345375028	5.14642574538012	5.29844663528907	5.24096790036521	0.54521954148848	0.145787625148419	0.509179680714812
Merged-chr2-165922557-4	chr2	165922020	165923020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37682.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.72932912386327	6.2910378178552	6.44308524670927	6.42570047876393	6.60236722214211	6.42804946505998	-0.0171954652509018	0.952086277897206	0.989065289931371
Merged-chr4-123748166-2	chr4	123747666	123748666	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023423, intron 1 of 4)	intron (NM_023423, intron 1 of 4)	2133.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	4.98360187991411	5.16167572554684	5.03251745118503	5.02370181421241	5.24955829542674	4.98913797914667	0.081827334179668	0.825916686440978	0.958999674095825
Merged-chr15-84209949-2	chr15	84209426	84210426	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178614, intron 12 of 14)	intron (NM_178614, intron 12 of 14)	17693.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	3.0671813416399	3.1508484358011	3.32650520255849	3.2523450417891	3.11376752318184	3.78898266642786	0.896758648248805	0.186391671640149	0.570928702883618
Merged-chr13-9494298-3	chr13	9493807	9494807	+	626.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	217782.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.28271822878044	4.52896883095056	4.46065427286359	4.17266656970532	4.49813018005999	4.39998326862814	-0.15198400553752	0.738660813442628	0.93406400924634
Merged-chr2-91949979-1	chr2	91949479	91950479	+	547.0	f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	369.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.44002558647018	6.3118246162336	6.18678883838366	6.18258328966719	6.11333487452166	6.26777535371449	-0.233329537076349	0.405181496157617	0.780049815379569
Merged-chr5-146824036-3	chr5	146823558	146824558	+	624.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8832.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	4.70001825885191	4.95179756581735	5.06075080614037	5.26507444627017	5.22671820729259	5.53955845214207	0.911252576846091	0.016279036976787	0.140571410208021
Merged-chr10-83922804-4	chr10	83922293	83923293	+	934.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177904.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.88927012572249	5.82529053047329	5.40256511896596	6.287963782108	6.46707538269522	5.93926593254514	0.902584673583184	0.00790996395739213	0.0853882045883088
Merged-chr6-54659134-3	chr6	54658633	54659633	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F2|LINE|L1	-22491.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.11705934047872	3.24049987648904	3.55210702015052	3.22615921965633	3.09425142524072	3.25432055207082	-0.486623348417156	0.452728225342622	0.809457484278845
Merged-chr19-46511913-2	chr19	46511413	46512413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	10265.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.26408829826378	8.00532172058388	7.57947053514318	7.72123200413196	7.82261991148987	7.36211758818508	-0.472607515650675	0.0900712967816403	0.398991293792947
Merged-chr19-34523454-2	chr19	34522954	34523954	+	929.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021460, exon 3 of 10)	exon (NM_021460, exon 3 of 10)	4020.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.33523460037511	6.40906035886755	6.40614008731957	6.57543823169043	6.96521473823301	6.50326583163351	0.524781974839779	0.0638861066857314	0.329363742771512
Merged-chr2-98666498-7	chr2	98665974	98666974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1198817.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	12.3208827566257	13.8790391822788	12.0774550556179	13.1214724792811	13.0903694333151	12.4501751608728	-0.162643743981927	0.833532967380513	0.96108264611081
Merged-chr2-45205901-1	chr2	45205401	45206401	+	644.0	f0_balb.idr	Intergenic	Intergenic	-88459.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.33338341866156	4.70853490493476	3.84832313811979	3.56661328102769	3.67577904821942	3.7504535174952	-2.09523551930169	0.000332857249460086	0.00759221107814552
Merged-chr11-85710365-4	chr11	85709865	85710865	+	967.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	9379.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.63977311601383	4.8466022845184	4.31920503852473	4.45629303496862	4.24591376271911	4.13739724366886	-0.858688240525796	0.0685024478478096	0.342339440271504
Merged-chr4-107686257-3	chr4	107685735	107686735	+	789.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2073.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	3.60607351333675	3.73264873046751	3.41372291361204	2.9962491809652	2.78724593978412	2.99629780026022	-3.37428202340041	2.03750896546526e-05	0.00074222032365423
Merged-chr16-31274820-1	chr16	31274320	31275320	+	1000.0	f0_balb.idr	intron (NM_025800, intron 1 of 5)	CpG	457.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	7.65378283908559	7.87905768218388	7.67728539931233	7.59831919734939	7.60940250834564	7.57463185319504	-0.215349760610283	0.333606678580842	0.724494720400407
Merged-chr2-142712953-4	chr2	142712468	142713468	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081133, exon 19 of 26)	exon (NM_001081133, exon 19 of 26)	188496.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.62126333196115	3.53197281253554	3.58807781820015	3.58410839675159	3.70218356859005	3.710561666995	0.301418997692811	0.582812427993451	0.873826743013405
Merged-chr19-55715122-2	chr19	55714622	55715622	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12918.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.46759498019656	3.47881497708005	3.65503227323401	3.18987681966921	3.22936118169968	3.62557393220412	-0.676220352174442	0.276795620926294	0.674109056548471
Merged-chr11-89051956-2	chr11	89051466	89052466	+	811.099976	f0_c57.idr|f1_c57bl6.idr	intron (NM_019505, intron 3 of 10)	L1MB8|LINE|L1	8782.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	3.89133796828553	3.49813598172326	3.93180240607544	4.56374176935448	4.81160681719141	4.39441254638786	2.37879247416546	8.64308378086229e-06	0.000352536134920583
Merged-chr6-89422165-4	chr6	89421679	89422679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59566.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	6.20787812278299	5.96225105721202	5.90127499940032	6.02337853246921	6.03760737186244	5.66713967735901	-0.181019347399082	0.56623374041107	0.867257533499542
Merged-chr5-143527668-4	chr5	143527188	143528188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 1 of 6)	CpG	305.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	8.2969051914875	8.16546854063077	8.29633850524769	8.31454166747626	7.92907030897742	8.15556548211375	-0.158709452370571	0.479625880958297	0.824363039494411
Merged-chr5-147511616-2	chr5	147511116	147512116	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359433, intron 6 of 19)	intron (NM_001359433, intron 6 of 19)	81460.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	3.50756479071107	3.41985702226639	3.35122587019834	3.57494015896076	3.43500833362455	3.480093895181	0.244253201954422	0.674538436779364	0.911852710156386
Merged-chr2-155818564-2	chr2	155818000	155819000	+	932.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010808)	TTS (NM_010808)	703.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	6.52056839738547	6.51775531447751	6.23905449196527	6.17640645797809	6.53625037904034	6.23597329606204	-0.169619244109725	0.561176788544506	0.865407801976397
Merged-chr10-111107593-4	chr10	111107084	111108084	+	978.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-57218.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.0008115735349	2.99473859018194	2.79687585240418	2.78662635602476	2.60947792476674	2.93229090905506	-0.821171936969853	0.26904634829875	0.666194755066135
Merged-chr1-153486978-3	chr1	153486489	153487489	+	987.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 1 of 27)	CpG	671.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.4489393130198	6.73361481792968	6.59288139446853	6.56276001514327	6.77081190429204	6.73272467439566	0.149687333961289	0.574316555460062	0.870582911329883
Merged-chr2-154687752-3	chr2	154687246	154688246	+	640.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30720.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	4.71075216881977	4.85928162015034	5.01946715217648	4.81325854201448	4.85147874736131	4.67685008791253	-0.163145570232769	0.681862651068136	0.914901722830768
Merged-chr9-106890641-2	chr9	106890129	106891129	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029103, intron 2 of 3)	intron (NM_029103, intron 2 of 3)	1309.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	4.43423755416205	3.86115160781211	4.46162215149638	4.32130199407487	4.26546751902481	4.27326958293859	0.0264140580614186	0.958277046014003	0.990000537228272
Merged-chr3-90509145-4	chr3	90508637	90509637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293777, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	361.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	8.47649071951957	8.65054500463306	8.33875958428371	8.49803488311752	8.46818059277843	7.94150392911447	-0.227631060878847	0.362337751581526	0.74782499303743
Merged-chr14-8132966-4	chr14	8132442	8133442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	34731.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	5.06521623471987	4.7619689776577	4.8967337908792	4.75271893094468	4.77513096856307	5.16209519159213	-0.0352912538551718	0.93068087962358	0.984649701786071
Merged-chr5-101999770-3	chr5	101999293	102000293	+	868.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70128.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.90223681771995	6.62938359211677	6.45049935820467	6.51753730184552	6.64378277069448	6.15178737750453	-0.341973880796607	0.255675161916262	0.652740746494253
Merged-chr9-37232611-3	chr9	37232113	37233113	+	924.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020258, intron 17 of 17)	intron (NM_020258, intron 17 of 17)	23125.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	3.90527148541424	3.98058296177484	3.99954295301343	3.48315006394693	3.27177263802785	3.67651739926214	-1.71518878483778	0.00319127136335024	0.044182913078477
Merged-chr17-56996774-2	chr17	56996274	56997274	+	882.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-565.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	3.88054622221136	3.90655581464976	3.92735893508888	4.23863516136662	4.12488702395974	3.99753325622172	0.664064415590401	0.17629602012077	0.556486421902461
Merged-chr17-70753720-4	chr17	70753229	70754229	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	93048.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.00148268314736	3.71617794909644	3.83759406098283	3.50808853084688	3.52095656241936	3.53730716536462	-1.15658431209203	0.038384183515935	0.242547929981312
Merged-chr11-31852101-3	chr11	31851608	31852608	+	932.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18832.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.30265259144418	3.26517451593682	3.2419966609505	3.04365370965013	3.02293803250487	3.19952790576884	-0.80679592242065	0.207850869715141	0.59868364609575
Merged-chr15-80800915-3	chr15	80800422	80801422	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	2312.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.49289982666715	4.77605240897773	4.59772021793652	5.15127703533473	4.91550038375427	4.904662362184	0.823717071420417	0.042116490270163	0.256960619035029
Merged-chr1-184471543-4	chr1	184471040	184472040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86151.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.55512890980512	3.12752446578708	3.20440403702307	3.10668725397148	3.06520297173378	3.15831953265668	-0.863725890900727	0.192446154969075	0.579532397041974
Merged-chr1-170162483-2	chr1	170161983	170162983	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12481.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	5.59123249984025	5.81748635558535	5.76054295028525	5.49942052526212	5.6898446281476	5.98294970540947	0.00853559307088922	0.979495170737104	0.995255032086493
Merged-chr4-150557046-4	chr4	150556540	150557540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95134.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.24945739247432	7.29702592906085	7.08262705777635	7.15147875209647	7.26471983378042	6.91664694722432	-0.134167901018164	0.590478144265413	0.877240848236618
Merged-chr7-19309649-4	chr7	19309100	19310100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008036, exon 1 of 4)	5' UTR (NM_008036, exon 1 of 4)	445.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	7.82756057238167	7.69425504351255	7.33725445132448	7.55566803665588	7.73827039656337	7.69970020388788	0.0327743764218324	0.89427362212055	0.975430981798867
Merged-chr9-116104545-2	chr9	116104045	116105045	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	70818.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.7619721961976	3.57291144600271	3.86861121268099	3.56386308146582	3.12538765808122	3.36171186541513	-1.39185444036274	0.0264170026527596	0.193062459564095
Merged-chr5-134315987-2	chr5	134315487	134316487	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger13a|DNA|TcMar-Tigger	-1227.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	3.81100705958637	3.71678192496303	3.60766142674085	3.69161728799662	3.82061342513487	3.67904291782706	0.0581516661994202	0.914368665701643	0.980912729144991
Merged-chr11-54962059-2	chr11	54961559	54962559	+	640.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	881.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	2.94341897604949	2.9613130068992	2.76052379665083	3.37201717632262	3.14354906981285	3.15823973361597	1.51082702542143	0.0338016120090373	0.224828864608581
Merged-chr14-25479968-4	chr14	25479469	25480469	+	912.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	20784.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.58450006606343	5.4312120611298	5.77468349639002	5.61615522406245	5.82402564322257	5.68329580732382	0.225581410802082	0.489113992683388	0.829459847891797
Merged-chr9-78448243-4	chr9	78447759	78448759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026658)	promoter-TSS (NM_026658)	49.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	7.60467156627197	7.86252318863585	7.77719553984335	7.6202166129994	7.54406134997573	7.56342744916168	-0.255812255220834	0.254166436245491	0.651179145391095
Merged-chr17-71595230-4	chr17	71594731	71595731	+	826.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	3050.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	5.1426114528839	4.97003524943705	4.64524929710862	4.5392237417896	4.42734036376183	4.34708736444283	-1.18458856548784	0.00611075515813048	0.0706985143489601
Merged-chr19-36349148-7	chr19	36348541	36349541	+	990.693848	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30026.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	5.71702437533027	5.68476157579878	5.12080718645994	5.64524035609802	5.23043703114408	4.76621282364347	-0.521119595004353	0.237265235112995	0.633672456067794
Merged-chr6-33515497-4	chr6	33515004	33516004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	266376.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	5.99369922763152	6.25541173126458	5.99723449857595	6.00280560880677	6.19526769303609	6.29056755427702	0.121129133172623	0.683612141627723	0.915479407206029
Merged-chr8-90876550-4	chr8	90876051	90877051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	47716.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	7.69416567874197	7.51684610693625	7.67229300094782	7.22223433460263	7.44947047804228	7.23601380727817	-0.462284825367279	0.0484460478089285	0.279219972714922
Merged-chr10-93889795-4	chr10	93889252	93890252	+	990.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019648, exon 2 of 12)	5' UTR (NM_019648, exon 2 of 12)	1450.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	6.16459814732763	6.41156490225842	6.10839293734791	6.18300904010781	6.23200610451596	6.21224609136988	-0.0553999220767097	0.846021690217899	0.963949453265197
Merged-chr7-31125538-5	chr7	31124961	31125961	+	784.11499	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	1562.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	3.69572478265602	3.9296021979548	3.73084318916077	3.59553565885114	3.69088810146813	4.25542726285574	0.252488053552628	0.664117367603074	0.90751097049737
Merged-chr17-81518838-4	chr17	81518362	81519362	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219525.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.88116211556539	4.97402976920446	5.03758974476107	4.72866516498528	4.93191085061489	4.89096283614528	-0.234175869754553	0.54133905429325	0.856823485677174
Merged-chr11-101278988-4	chr11	101278471	101279471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026618)	promoter-TSS (NM_026618)	-23.0	NM_026618	52469.0	Mm.52	NM_026618	ENSMUSG00000017188	Coa3	1810033A19Rik|Ccdc56|D11Ertd99e|HSPC009	cytochrome C oxidase assembly factor 3	protein-coding	5.70893857699889	5.40381378838804	5.82899633842259	5.70293510190985	5.85296402625931	5.21650870472219	-0.0369550032238973	0.920425773506925	0.982360480259154
Merged-chr12-55552808-4	chr12	55552297	55553297	+	970.37854	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44-int|LTR|ERVK	-12408.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	4.02709792518519	4.14623501861975	3.77760143619525	3.90574151584886	3.6692415881568	3.73944189895539	-0.711043260136541	0.183001244672365	0.566048838173882
Merged-chr18-56431424-2	chr18	56430924	56431924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-708.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.85468029193941	4.45637261528639	4.30840835330524	4.43152978481361	4.41146795458564	4.51288179514088	-0.300681663783458	0.510311953302341	0.840873669603184
Merged-chr9-69439905-4	chr9	69439402	69440402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13781.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	5.37258022751657	4.99982074407952	5.36764678979851	5.49386883548816	5.13202166074661	4.9556653624966	-0.0705055618152876	0.857100816510788	0.966681760410265
Merged-chr9-40730887-3	chr9	40730359	40731359	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	44895.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.68788924498049	5.7673368522978	5.50880634560202	4.07675372279335	3.78256169850086	4.32342092067705	-4.22677795764065	1.98810399631748e-16	7.25553321603442e-14
Merged-chr3-97824126-4	chr3	97823596	97824596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 4 of 46)	intron (NM_001039376, intron 4 of 46)	-56082.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.65603413415289	4.71850172062779	4.66777610153332	4.67930278978413	4.32868470575168	4.48540051808745	-0.439111204090353	0.302500587303441	0.699173943663909
Merged-chr4-141731977-4	chr4	141731488	141732488	+	834.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8569.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.93227683072134	4.9799696129964	5.00214624578414	4.44302097191846	4.44942314786574	4.93096788502362	-0.823499790981103	0.0503488729372802	0.285500137615184
Merged-chr13-5845361-4	chr13	5844847	5845847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12745.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.1401278370259	8.80293252965938	8.14854144420977	8.11944133220254	8.55858313925039	8.08295754462941	-0.184078630663019	0.521069857165385	0.846922225237145
Merged-chr9-21265213-4	chr9	21264738	21265738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-47.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	5.55419147430291	5.64218909111757	5.88683373614716	5.51660929382364	5.24909973942072	5.49102703110799	-0.523512591482022	0.122281532493893	0.467753050742009
Merged-chr10-80144273-2	chr10	80143773	80144773	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347092, intron 2 of 2)	BC1_Mm|scRNA|scRNA	1958.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	2.11708303956713	2.01274411840802	2.31287123660979	1.9225550516896	1.94595475607901	2.13256172224971	-1.16768541183544	0.223100028914722	1
Merged-chr11-82004326-2	chr11	82003826	82004826	+	651.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31251.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	4.13861200358468	3.8973985619129	4.07600238756421	4.15494819669473	4.24310777673652	4.40862356768505	0.643266277528398	0.180671649297664	0.56265140611016
Merged-chr8-26434538-1	chr8	26434038	26435038	+	558.0	f1_balb.idr	Intergenic	Intergenic	276369.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	3.28861562413512	2.96918253768669	3.36206930390283	3.22705513857117	3.10800643055377	3.21189989747287	-0.134001894739896	0.83847908013049	0.962518552953479
Merged-chr12-102754934-2	chr12	102754434	102755434	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142938, intron 1 of 1)	RLTR11A2|LTR|ERVK	2876.0	NM_001142939	100859931.0	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	2.63238484186178	2.45827747467384	2.52836618352984	2.68356098815032	2.53913026722111	2.84962650142496	0.839122794673736	0.284019116257497	1
Merged-chr4-8690237-4	chr4	8689723	8690723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277149)	promoter-TSS (NM_001277149)	-183.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.6930024615972	6.74568097072942	6.76626792954521	6.77239230675985	6.24933164847199	6.63656302950981	-0.269387616575478	0.342374561042183	0.731295592026562
Merged-chr9-66136152-2	chr9	66135652	66136652	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026635, intron 3 of 4)	intron (NM_026635, intron 3 of 4)	9541.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	2.40837144537092	2.55766787080143	2.59215299550026	2.55969665022478	2.27376746577974	2.40926835374895	-0.63136242782235	0.446969652616629	1
Merged-chr4-116123769-4	chr4	116123269	116124269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009015)	promoter-TSS (NM_009015)	-71.0	NR_131048	76786.0	Mm.373813	NR_131048	ENSMUSG00000028700	2510003B16Rik	-	RIKEN cDNA 2510003B16 gene	ncRNA	3.87177804670701	3.77748932507362	3.80824484471809	4.03137792495225	4.00197874232839	4.0281615233909	0.61430808583375	0.219914533600758	0.61423936831415
Merged-chr14-55698287-3	chr14	55697759	55698759	+	919.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14829.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	5.39044833790115	5.41700958776774	5.49276347718749	5.5845763371777	5.62284580022665	5.55548916937348	0.305287745775684	0.343231624543465	0.732134758996586
Merged-chr1-131185677-2	chr1	131185177	131186177	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	14508.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	4.37444007121195	4.02161953067588	4.13364624708196	4.2081494263369	4.47270533536599	4.20304315944374	0.32716719880906	0.498219617314947	0.833856267944725
Merged-chr17-63500545-4	chr17	63500077	63501077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	3.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	6.64095059239989	6.34453944747658	6.28540171384238	6.28336500416381	5.88025971870867	6.04202906335242	-0.604898452937593	0.0465731545967317	0.273040164002315
Merged-chr2-152806710-1	chr2	152806210	152807210	+	1000.0	f0_balb.idr	intron (NM_009743, intron 2 of 2)	L2|LINE|L2	21779.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	8.08378771256582	8.16446073818041	7.96197440412944	8.00061027592141	8.06172555502846	7.59623096588566	-0.233298903326922	0.329733986355332	0.721504110160967
Merged-chr1-128633871-3	chr1	128633374	128634374	+	741.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41575.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.67718067686823	2.84196181397101	2.89768485109241	3.03697631451101	2.91363226241919	3.0299199560747	0.917222925347778	0.193951654183261	0.581296310830689
Merged-chr10-43221432-4	chr10	43220928	43221928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-58.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	6.74956638795206	7.0756665233095	6.93419446398452	6.88216939309383	6.89289535608716	6.86400438861407	-0.0729281499212914	0.773527735992942	0.94412263195524
Merged-chr15-25321804-4	chr15	25321315	25322315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91949.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.83347632893477	7.10557774346759	6.80433775745516	6.90046272587205	7.28189558390678	6.93741992385583	0.203064880304469	0.451842505258352	0.809246047392897
Merged-chr2-121447320-2	chr2	121446821	121447821	+	977.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1877.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	3.82657448593205	3.83277940942136	3.73111611255382	3.54101619586058	3.41703714823102	3.69766930415501	-0.876902568562005	0.11468864110114	0.452186398382538
Merged-chr9-63377850-4	chr9	63377344	63378344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011840)	promoter-TSS (NM_011840)	8.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	6.43426500342904	6.75718472358533	6.58494697823735	6.93013875803001	6.74744623669888	6.51991935463987	0.235640224937455	0.397269740891091	0.774181942949692
Merged-chr10-79798430-4	chr10	79797928	79798928	+	932.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	4856.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	3.92364229477929	4.27640322302092	4.23352878776983	4.4337373419567	4.49497321330796	4.51673885099172	0.873915996739295	0.060671650351397	0.319101837203376
Merged-chr13-46905210-4	chr13	46904742	46905742	+	954.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	24476.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	5.0355766741002	5.24311000232499	5.62936354281654	5.85283257240209	5.95372977067582	6.30832143932327	1.35243657804319	0.000176665771710762	0.00452586377232422
Merged-chr2-27026976-4	chr2	27026470	27027470	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 2 of 8)	intron (NM_001177627, intron 2 of 8)	1028.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	4.4450650519821	4.15382469085052	4.28154823050325	4.60535748747352	4.37901471133306	4.43940364752605	0.456250455520054	0.31278323237857	0.707413942140844
Merged-chr17-72788271-4	chr17	72787803	72788803	+	946.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-48325.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	3.80887985854818	4.04251015173632	3.56797245785631	3.72645934023219	3.88916872741236	3.91044609548443	0.0424930460336977	0.938837823623792	0.986550175078409
Merged-chr16-30013275-4	chr16	30012773	30013773	+	946.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	4606.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	4.04771675775815	3.70946978280628	3.7317610588144	3.92855220081369	3.67231486110155	3.80278946486699	-0.131261737029596	0.809304246875355	0.954721853010197
Merged-chr17-17835873-2	chr17	17835373	17836373	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162909, intron 2 of 8)	intron (NM_001162909, intron 2 of 8)	4898.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	2.9295981453335	3.00735830711813	3.43963992894427	2.93372999956775	2.91759975637235	3.02757991878548	-0.805467311369699	0.25348278207179	0.650896916687683
Merged-chr11-90638130-4	chr11	90637653	90638653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011505)	promoter-TSS (NM_011505)	-31.0	NM_199008	69802.0	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	6.02335132309176	5.99643006179085	6.08711441250881	6.14964173247123	5.89711091005693	6.28887469027993	0.132089205618828	0.658791406705992	0.905074057543707
Merged-chr15-38382721-4	chr15	38382167	38383167	+	952.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie15a|DNA|hAT-Charlie	-81956.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.40532722672367	4.37058200960581	4.23786133303005	4.19636503450694	4.26200840170691	4.43725484244489	-0.129751478857174	0.774364770430547	0.944451927033185
Merged-chr17-26726851-2	chr17	26726351	26727351	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 1 of 8)	intron (NM_029870, intron 1 of 8)	11201.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	2.63169002528558	3.12822480321575	3.17520081168144	2.95905073902376	2.76945357831899	3.07980525052774	-0.275379622468917	0.720465605779652	0.928182174829506
Merged-chr11-58982224-3	chr11	58981684	58982684	+	882.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290988, exon 3 of 7)	exon (NM_001290988, exon 3 of 7)	4091.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	3.80697252510464	3.38816950600659	3.8013356800663	4.638627691827	4.29847368035344	4.03564021883658	2.03337731238698	0.000403771449759101	0.00884830518608251
Merged-chr2-167939707-4	chr2	167939228	167940228	+	996.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	7401.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.0887375227092	5.6693999613329	6.00404567016151	6.02576415878102	5.99959099325227	5.85016232780752	0.0621084446188138	0.84340261574826	0.963425562878302
Merged-chr4-138012291-2	chr4	138011769	138012769	+	976.25	f0_balb.idr|f1_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	14444.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.76541351086007	5.90095756986142	5.57253593292356	3.9813502244328	3.85107429132253	4.21081632839433	-4.67533969773316	7.5080305280654e-18	3.59039197804176e-15
Merged-chr9-63058272-2	chr9	63057772	63058772	+	662.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77393.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.05253626694804	5.07510095957384	5.21948367452619	5.20163658868803	5.3816076010388	5.79037152200185	0.715342563715394	0.0557368369613733	0.303895598576892
Merged-chr7-55874937-4	chr7	55874443	55875443	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164661, exon 7 of 32)	exon (NM_001164661, exon 7 of 32)	32872.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	3.80350142215301	3.68333315383863	3.96222541976439	4.05118622712203	3.60415637349623	4.03058268431555	0.278373946113928	0.612902125532881	0.886969289870611
Merged-chr19-11049607-2	chr19	11049107	11050107	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 1 of 2)	MLTR14|LTR|ERV1	959.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	6.185697393638	5.95489773832638	6.18599590752744	6.4639730766302	6.53408267544388	6.45950410836375	0.629817142198876	0.022941806183998	0.176917683870075
Merged-chr11-70198526-1	chr11	70198026	70199026	+	815.5	f0_balb.idr	Intergenic	RLTR19B|LTR|ERVK	-15384.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	2.44013981020296	2.53992189835617	2.72624148603418	2.388632420762	2.54433946592052	2.68001772531191	-0.169355295378661	0.832850855167735	1
Merged-chr2-119263117-1	chr2	119262617	119263617	+	784.0	f0_balb.idr	Intergenic	Intergenic	8109.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	2.35674788885312	2.31614447427201	2.42936454931287	2.04616597952836	2.21207350051548	2.3130850576074	-1.21447870441723	0.181279994077047	1
Merged-chr9-59731781-2	chr9	59731277	59732277	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18872.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	8.02152572212338	8.04658366257205	7.7908557770246	7.93258862282594	8.20539604951445	7.7771105873322	0.0424685161111455	0.858835161735527	0.96702230262239
Merged-chr15-103462753-4	chr15	103462233	103463233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153505, exon 7 of 31)	exon (NM_153505, exon 7 of 31)	8908.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	4.9410538762503	4.55645904050093	4.78555206459954	4.62694893242782	4.73901441298078	5.0257811001778	0.0670586494974036	0.873391451870282	0.97040331531529
Merged-chr11-106702761-4	chr11	106702250	106703250	+	754.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	12531.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.25814632644621	4.36321818164083	4.06838890086237	4.0822900429421	3.93879499630081	4.13774493248777	-0.551791317329725	0.253193671499292	0.650602979742283
Merged-chr12-40445920-4	chr12	40445418	40446418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172575)	promoter-TSS (NM_172575)	-128.0	NM_178845	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	7.29767412062432	7.53956579814841	7.15440881725248	7.19907103750196	7.525940077459	7.2368767618681	-0.0168279248598187	0.947774285602757	0.988008807662239
Merged-chr14-22818224-1	chr14	22817724	22818724	+	612.0	f0_balb.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-275426.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	3.1362345763884	3.04751945253095	2.98030068098869	2.69004741697501	2.54305503132556	2.74213501218073	-2.2762669128255	0.00388426641884335	0.050825922342997
Merged-chr16-91546623-4	chr16	91546128	91547128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-466.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	7.95526005610534	7.50877684220215	7.68353488492909	7.92734363607726	7.95646760402239	7.90049614500222	0.283300156780486	0.231491130383944	0.62745071742539
Merged-chr11-107333076-2	chr11	107332576	107333576	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	B3A|SINE|B2	137644.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.95871947574323	3.75874759061264	3.63674417032803	3.70362696900381	3.65059012087716	3.41519598213943	-0.654445612746682	0.254196898491644	0.651179145391095
Merged-chr2-166239372-2	chr2	166238872	166239872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34536.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.12490298232518	2.80782185258323	2.66590137429799	2.83282761386259	2.64492558263203	3.04504210732457	-0.18243407937034	0.816424937742369	0.956664796338092
Merged-chr1-171294813-4	chr1	171294293	171295293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360931, exon 2 of 7)	5' UTR (NM_001360931, exon 2 of 7)	209.0	NM_001360932	66155.0	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	8.41235188652249	8.32345863869843	8.19281936445604	8.30696240711004	8.2562521235669	8.18183313520206	-0.0915707031398963	0.660034518964643	0.905839651882928
Merged-chr2-45081620-4	chr2	45081121	45082121	+	912.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	28656.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.81421231772	5.16648283572945	4.83444829988428	5.12698657410349	5.15229782559188	5.25097945256748	0.456628367256825	0.231493635287885	0.62745071742539
Merged-chr18-66468052-4	chr18	66467565	66468565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9461.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.31342225707905	7.12378325581318	6.91548910559891	7.14899644975515	7.21597512465348	7.20002545082557	0.078840653519881	0.750957386814468	0.937674068369247
Merged-chr4-140983039-2	chr4	140982539	140983539	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3834.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	7.68821220103245	7.50080576889473	7.59256398938824	7.65538204808792	7.88011325556945	7.79149569124615	0.268090142861382	0.233391181625777	0.629763382972328
Merged-chr10-43841242-4	chr10	43840730	43841730	+	979.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	15323.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	5.38598372734465	5.64316891157857	5.60134482321703	5.57304236865215	5.82412449860246	5.33307847904737	0.115657449463656	0.740321298632833	0.934509856785078
Merged-chr4-105207120-4	chr4	105206619	105207619	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 2 of 5)	intron (NM_080555, intron 2 of 5)	49772.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.29470790412259	3.63549095688201	3.46682219594525	3.63172960027449	3.54887134862195	3.64596542978999	0.469052139572767	0.422124282775192	0.79098189652931
Merged-chr16-97961542-4	chr16	97961020	97962020	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1102.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	6.60698287673501	6.41831787661485	5.92976784226695	6.44451316145193	6.37503191289657	6.04313395844274	-0.0905799620206447	0.781186612849536	0.946170623764308
Merged-chr6-92943604-3	chr6	92943113	92944113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015530, intron 1 of 2)	CpG	3031.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.88023913085576	3.95481779281437	4.00037704445582	2.97580454761813	2.87136750648837	3.16109703309017	-5.41406928422134	4.96555997483454e-07	2.91583849249141e-05
Merged-chr6-34865466-3	chr6	34864946	34865946	+	849.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2300.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.22614052997256	6.37288376202012	6.20257415853497	6.2747400441742	6.5343622097058	6.10863467351499	0.0967317165822111	0.740851125928315	0.934712654423072
Merged-chr6-113667889-2	chr6	113667389	113668389	+	956.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-29161.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	5.37471069623292	5.26333143375563	5.54137191353063	5.52065795175296	5.86280507786105	6.07447314802585	0.826284129494563	0.0170985683776588	0.145503955570488
Merged-chr10-19012838-5	chr10	19012427	19013427	+	879.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	-964.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.88736557051389	5.18437939661413	5.00219626359064	5.78935415931831	5.73418751180386	6.01529853994841	1.56325821288164	9.5523386275108e-06	0.000384719744684375
Merged-chr1-55030657-2	chr1	55030105	55031105	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3127.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	3.25503746833712	3.36437224579234	3.53463352755595	3.07180224172722	3.31131248461434	3.55360988977776	-0.245312517921105	0.702575949752596	0.921908665861083
Merged-chr1-93235779-4	chr1	93235290	93236290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172463)	promoter-TSS (NM_172463)	-107.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	4.85568094096741	4.50462811820465	4.56539346758883	4.4718253988495	4.22266179070661	5.08690296509765	-0.0356794356201587	0.942777828574088	0.987202156853573
Merged-chr11-86748708-2	chr11	86748208	86749208	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	8859.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.22700179974894	5.42876427279922	5.52395577716343	5.38849036505933	5.44658037309581	5.44428965799431	0.0671999676142731	0.842654569724413	0.963157971003253
Merged-chr15-99946516-2	chr15	99946016	99947016	+	600.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14858.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	2.90833877618204	2.95903506220286	3.11893703045621	2.9125153343704	2.6757731143175	3.54742509180091	0.441354401039997	0.572999200149256	0.869934493236159
Merged-chr5-36574772-4	chr5	36574271	36575271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	7626.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	7.26814345614616	7.21142020662448	7.07422624765689	7.42886929465756	7.76435214578395	7.17168632259251	0.441987377476116	0.0960982801289566	0.413322944948321
Merged-chr11-107131306-6	chr11	107130877	107131877	+	854.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176850, exon 1 of 28)	exon (NM_176850, exon 1 of 28)	545.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	7.04235202179907	7.32554263094571	7.17668335606432	7.40036260082938	7.17314359918967	7.17282639437777	0.0985938163412993	0.689006303963518	0.917235946766438
Merged-chr11-93820901-4	chr11	93820423	93821423	+	830.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64843.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	4.42344720336605	4.55939155139876	4.70213102355591	4.25435849799771	4.1742094397454	4.37023611569618	-0.775600873836112	0.0820640687349523	0.378961828861472
Merged-chr1-153905708-2	chr1	153905208	153906208	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008131, intron 3 of 6)	B1_Mus2|SINE|Alu	5779.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	3.57453683305814	3.66355619595415	3.78285414916983	3.40977912233014	3.68231285628975	3.94449796311121	0.0626240896040654	0.913680296747679	0.980796798598326
Merged-chr17-65631659-2	chr17	65631159	65632159	+	716.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8097.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	3.7425437719769	3.65092308301295	3.96734892522259	3.85370065481945	3.85752203772647	3.73882470698018	0.117401138004625	0.825293480714452	0.958797854615734
Merged-chr13-35081306-4	chr13	35080795	35081795	+	913.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	86509.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	3.93496196150661	3.83277840569594	4.00812170063695	3.34580564275474	3.36364972583162	3.89342003530196	-1.27661225386734	0.0341323975814572	0.226049708528963
Merged-chr16-93144226-4	chr16	93143706	93144706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208983.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	4.16284539327362	4.28965201943332	3.92395894099142	4.18808818971147	4.13229967590174	4.24073471130048	0.111523453581231	0.817935841653374	0.956835450074313
Merged-chr16-38441809-2	chr16	38441312	38442312	+	917.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-8667.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.05193155498457	2.97276503801448	3.00690438318023	3.1392833955645	2.94075312180076	3.07943408113019	0.18996852706909	0.775129203388613	0.944581226923445
Merged-chr11-96311668-4	chr11	96311167	96312167	+	995.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4757.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	5.73514127996367	5.79285749693684	5.71262454385305	5.89040199092985	5.66693153801803	5.58037524483349	-0.0485629766086083	0.877528420915269	0.971635702815161
Merged-chr11-48837738-4	chr11	48837257	48838257	+	808.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347446, exon 1 of 7)	exon (NM_001347446, exon 1 of 7)	286.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	4.1042128549504	3.74932142880669	3.85355497688902	4.03809030107297	3.64403934224909	3.65297768527195	-0.377951758796615	0.498159662522085	0.833856267944725
Merged-chr13-111944315-4	chr13	111943823	111944823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76387.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.00147199165618	5.8232048695281	5.23145588834371	5.28416436637871	5.38839722175807	5.26213649482045	-0.797580898948154	0.0340572118394585	0.22573815419722
Merged-chr7-27605758-3	chr7	27605266	27606266	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-31.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	4.49881174618434	4.24926795114629	4.99343143471878	6.25816846662883	6.60417669123714	6.65347257970141	3.90046973794407	2.86767332679597e-21	2.34330469138168e-18
Merged-chr6-38948147-2	chr6	38947647	38948647	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ORR1A2|LTR|ERVL-MaLR	29161.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.54015258623703	4.5378862279863	4.43559609044211	4.65411642956238	4.53101685070038	4.58830894020131	0.197614391966744	0.636392865604265	0.897127955293515
Merged-chr7-31158755-4	chr7	31158268	31159268	+	962.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-3590.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	4.51819321524335	4.87621289324216	4.66129793161188	4.45076466062943	4.35743788581393	4.60834098387817	-0.560577745915494	0.195451809154213	0.583096846154808
Merged-chr2-129546972-4	chr2	129546455	129547455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10353.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	7.47114170650925	6.97340889369332	6.63669537504631	6.96640520906267	7.2061689508644	6.84670467278587	-0.0961907367522492	0.758264767764683	0.940104678746179
Merged-chr13-19841319-4	chr13	19840875	19841875	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17118.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	3.81069551907175	3.51574921185628	3.56965170651705	3.51584462417266	3.34504723153987	3.41655325465098	-0.787001006560976	0.179632348439766	0.561125246422419
Merged-chr17-88440593-4	chr17	88440114	88441114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-90.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	7.38341398237777	7.25911346646289	7.28991572602574	7.20655811553935	6.59368607186877	7.16168182522713	-0.45615563915821	0.103525999516387	0.428990592669748
Merged-chr1-93803879-4	chr1	93803382	93804382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-83.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	7.75184946508616	7.66254078249479	7.38737244809606	7.62254424233032	7.42551335353673	7.30704631988336	-0.226178438671382	0.355730274140278	0.742533292794428
Merged-chr13-45442613-4	chr13	45442113	45443113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52871.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.7819158235701	6.57042232825798	6.56995112981133	6.60486365642123	6.85518355415437	6.11685345859357	-0.109617586467675	0.724730129371907	0.929459725191008
Merged-chr6-52411463-4	chr6	52410969	52411969	+	930.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80982.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	3.2036327478655	3.36798669787987	3.4105886854923	2.9590640232655	3.20138903204381	3.02308622069316	-1.08912334243962	0.105143214305929	0.432635573927789
Merged-chr1-82724945-4	chr1	82724463	82725463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	73.0	NM_001310695	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	7.85454902539567	8.10188297086362	7.59179945169885	7.74411096769245	7.72207145037089	7.25785763903427	-0.389990978591586	0.14705486715069	0.511715514631757
Merged-chr3-8968816-4	chr3	8968312	8969312	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-4666.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.8323325911098	5.85659025697327	5.36037690583989	6.00102639175866	6.22383025261152	6.0157897984599	0.65119381750007	0.0491579387388239	0.281763039618156
Merged-chr12-40600592-3	chr12	40600095	40601095	+	703.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	154542.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.16510149998253	3.10450597188576	3.28165906521546	2.77043199275412	2.76271728211338	3.07659306136698	-1.51009082957399	0.0354499821065561	0.231115107037712
Merged-chr10-39444191-4	chr10	39443708	39444708	+	847.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	74409.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.37158868432183	5.25912137339169	5.25641422724095	5.52563182577648	5.32368986742027	5.3836728733167	0.222042302542216	0.514142003094056	0.842953395863139
Merged-chr6-5496284-6	chr6	5495795	5496795	+	852.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013743)	promoter-TSS (NM_013743)	-17.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	3.91580460074518	4.06974738380582	4.00658001566782	3.48636810959611	3.06029803336556	3.45316623853685	-2.4995806865861	0.000125777820001838	0.00344258580962368
Merged-chr10-62947051-4	chr10	62946556	62947556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152862)	promoter-TSS (NR_152862)	27.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	3.90824916267163	3.83557422367889	3.94605788899147	4.01778678408718	3.88550935893702	3.81249182728156	0.0488896014353391	0.923279126702329	0.982699256056545
Merged-chr8-71274112-2	chr8	71273612	71274612	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	1398.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	4.53469059638816	4.70818654843892	4.68598410718599	4.80530714262857	4.67305877682283	4.6724594292702	0.176195156608331	0.663992882385379	0.907470390051782
Merged-chr17-10314492-3	chr17	10313932	10314932	+	803.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4929.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	5.32381293148663	5.55766183914178	5.35711513851389	5.31864957078624	5.1739503173011	5.12335055229195	-0.420671021567103	0.228648488911771	0.623879728108581
Merged-chr15-13393458-4	chr15	13392966	13393966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219791.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	6.30901453354008	6.41407952041466	6.24086018482352	6.1868178543198	6.48949437628778	6.32116606734887	0.0282458391941415	0.919988031912207	0.982208247165672
Merged-chr6-129372386-2	chr6	129371886	129372886	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13117.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	4.07513149705775	3.46870339712579	4.15649897425077	3.90874121261065	3.77424141699887	3.90294725369017	-0.216231297198395	0.709906068177297	0.924166640014037
Merged-chr8-109780742-4	chr8	109780238	109781238	+	815.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	2155.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	6.13019015301324	6.2946250691572	6.1107989377261	6.18507855249674	6.30542236041179	6.31586972643334	0.140235381124447	0.616413181089926	0.888359083506792
Merged-chr4-150604846-2	chr4	150604346	150605346	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	RLTR51B_Mm|LTR|ERVK?	47328.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.64034773522491	4.31206113458944	4.29893711201454	4.36563455972437	4.0610197008073	4.36675606249928	-0.451087951163412	0.341201407020706	0.730686899066382
Merged-chr10-81294483-3	chr10	81293943	81294943	+	886.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	1480.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	4.38212571853255	4.25697022217163	4.38680393884396	4.26742713643223	4.30283969118102	4.08251547935919	-0.299815279575922	0.514272046279209	0.843017108487006
Merged-chr12-16875475-4	chr12	16874972	16875972	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19506.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.76970894734665	7.94254437214736	7.57976409810329	7.256759076007	7.72630911068228	7.43156241405128	-0.411332095436691	0.109338001309599	0.441790725633425
Merged-chr5-99239299-3	chr5	99238794	99239794	+	813.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13633.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.72138173793097	4.76343043762846	4.89638238746714	4.87340220217527	5.06301232201901	4.73154187461362	0.264989487213903	0.503588995177754	0.837098370073128
Merged-chr3-9886255-4	chr3	9885761	9886761	+	895.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52582.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.08359819204378	5.16392494375333	5.29334994194522	5.73871923927087	5.95556385854644	6.09125526708632	1.42908146016504	1.85286069650721e-05	0.000683693271995441
Merged-chr11-98438977-4	chr11	98438456	98439456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025559)	promoter-TSS (NM_025559)	32.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	6.50519429688278	6.96373247183289	6.48995592495923	6.81761645477936	6.62412517860023	6.4745838441311	-0.0492283865668252	0.866851211946239	0.969114221403526
Merged-chr5-122372474-4	chr5	122371970	122372970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	-38.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	6.39288953024317	6.78940299706141	6.72743983216912	6.52222448737131	6.75081181257165	6.53928168058917	-0.050414134783531	0.856970258718872	0.966648789939674
Merged-chr1-24684033-2	chr1	24683533	24684533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	5115.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	4.69404364133057	4.51043081317755	4.39188107947817	4.8434264227798	4.48213060371522	4.8292223123863	0.41924392487463	0.336660888811412	0.726682384399595
Merged-chr6-94284792-3	chr6	94284293	94285293	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	-876.0	NM_001286785	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	3.26031850640446	2.87266273692419	2.98702541579162	2.84054010788736	2.54722602048197	2.67738965582253	-1.90199131419488	0.01686240052766	0.144113252167782
Merged-chr18-61091272-2	chr18	61090772	61091772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14300.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.21674093085026	4.8202380882121	4.70623181530032	5.10934567651279	4.84360240626558	5.20959996405387	0.239590731163378	0.562168981861088	0.86560636450104
Merged-chr4-141782959-4	chr4	141782482	141783482	+	918.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172338, exon 4 of 15)	exon (NM_172338, exon 4 of 15)	7662.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	5.0877374690141	5.13751588749843	4.9979814237995	4.63182140661128	4.72900197456981	4.45112408147987	-1.03029367802489	0.0104935184273845	0.103883959703249
Merged-chr5-122851067-2	chr5	122850577	122851577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030564, intron 1 of 5)	intron (NM_030564, intron 1 of 5)	889.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	5.54911253279167	5.64512125996458	5.08011382365343	5.41424707960298	5.13408610350422	5.25049449948978	-0.381707175601453	0.308503027350876	0.704565421726157
Merged-chr2-167016329-2	chr2	167015829	167016829	+	783.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153065, intron 1 of 20)	intron (NM_153065, intron 1 of 20)	1016.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	4.04171059017474	3.43446612104404	3.54345883619839	3.77201462851602	3.59673692799226	3.43855213624631	-0.321287202139839	0.605115383687025	0.883394857670054
Merged-chr6-72735375-4	chr6	72734856	72735856	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	53689.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	5.58168214166784	5.62489826737675	5.75293566719969	6.61720566974913	6.77341656990332	6.28616625950958	1.59402434539672	1.2762324572273e-07	8.89386518433577e-06
Merged-chr6-17634056-3	chr6	17633536	17634536	+	781.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-2974.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.27388566910585	5.0717989181221	5.03240298414024	5.02356995825148	4.94081788338573	5.09717559040865	-0.252466043686148	0.493308994746349	0.831208279358962
Merged-chr7-128392073-3	chr7	128391576	128392576	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26096.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	8.09352585101608	7.97632108358432	7.81372444670689	7.78742612849143	8.10186562310897	7.96611609042783	-0.0134925963617131	0.953040760514325	0.989359300570295
Merged-chr5-31253985-2	chr5	31253485	31254485	+	621.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027221)	TTS (NM_027221)	2279.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	3.06802293515833	2.92894786435448	3.21628183078712	2.91365233749962	2.95088168303604	3.00411900022448	-0.534263994567065	0.431263553443477	0.796779931055018
Merged-chr8-95805520-1	chr8	95805020	95806020	+	656.0	f1_c57bl6.idr	intron (NM_001205226, intron 1 of 48)	intron (NM_001205226, intron 1 of 48)	-1310.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	3.14815578763446	3.25671245600818	3.3478761659549	3.5215743558275	3.4022294665913	3.63081402467834	1.04115835597632	0.0858121932631012	0.387952239991096
Merged-chr4-126220817-2	chr4	126220317	126221317	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-18107.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	3.75808842922523	3.8488858957119	3.96550410348929	4.25567956932796	4.16101241264503	3.98545020539252	0.864497670198451	0.083879071812718	0.383307026005993
Merged-chr4-86666041-7	chr4	86665567	86666567	+	830.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	MTC|LTR|ERVL-MaLR	3992.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.82393444688808	4.82355720914961	4.50093799033829	4.74035557388527	4.36186675479068	4.65407806405825	-0.344976216661521	0.427410150147487	0.79433448971393
Merged-chr2-68985463-4	chr2	68984957	68985957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	124016.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.21380688449118	4.85888637494522	5.3320379106368	4.80454415200295	4.57112650922808	5.22049861848182	-0.566395363155765	0.188301730430874	0.573809654777037
Merged-chr13-96671916-3	chr13	96671425	96672425	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-989.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	5.97935490519056	6.16257182138656	6.12802794304458	6.442718306887	6.24816293759478	6.03014107440972	0.281205566143148	0.341010430261176	0.730659982236591
Merged-chr17-56033070-4	chr17	56032569	56033569	+	892.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	3568.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	3.82481934519408	3.79653927832174	4.0359845138154	3.76485054392187	3.50528699951044	3.71789153860832	-0.734063482956315	0.1779346874213	0.55892688546374
Merged-chr15-30465185-2	chr15	30464685	30465685	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	L3|LINE|CR1	292592.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	2.32861618820189	2.3248369725585	2.13379829930231	2.35115442134861	2.22079469381224	2.60186930153781	0.834080507125874	0.353688881509993	1
Merged-chr7-31149970-4	chr7	31149471	31150471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 1 of 18)	intron (NR_153431, intron 1 of 18)	1200.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	6.56348403700843	6.28121476779178	6.06962274595386	6.82928373555374	6.36604625505572	5.92805918483039	0.176286742294597	0.617980050289717	0.889069638978004
Merged-chr9-20952856-5	chr9	20952312	20953312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199433)	promoter-TSS (NM_001199433)	167.0	NM_010066	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	5.9440059715372	6.23373448872079	6.16263904829139	6.18707089306629	6.08412194943124	6.00146132114024	-0.038153636328681	0.896588299358657	0.975838835430135
Merged-chr13-37657514-4	chr13	37657010	37658010	+	925.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168528.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.22536446894137	6.18160062113844	5.87873984824234	5.82744466728243	5.92581722662606	5.78458990897885	-0.454914093765622	0.134504750326525	0.490290939027007
Merged-chr1-74307653-4	chr1	74307151	74308151	+	953.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039509, intron 2 of 9)	B1_Mur2|SINE|Alu	-3315.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	5.40872628621881	5.18390858408732	5.29504008067475	4.99006433496574	5.39223248097376	4.90039208954708	-0.342101441948396	0.376552188351549	0.759305679321894
Merged-chr12-59013452-4	chr12	59012953	59013953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025656)	promoter-TSS (NM_025656)	62.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	6.79666279022175	6.85733248860252	6.73346142001548	6.77550237962633	7.00891688844013	6.82311884505414	0.122669977120803	0.626664778484547	0.892916235446326
Merged-chr5-101903066-2	chr5	101902566	101903566	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 30 of 66)	intron (NM_172882, intron 30 of 66)	137936.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.28780872886706	2.39220206602898	2.63174461634574	2.23066410426564	2.15122273089638	2.52556386936121	-0.86068153304926	0.333944453370431	1
Merged-chr16-91645123-2	chr16	91644623	91645623	+	941.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_010256, intron 1 of 21)	B1F2|SINE|Alu	1849.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	3.31984082376022	3.20887526856562	3.29241502658842	3.43004986271455	3.26508883495872	3.36393251015459	0.31551636446392	0.603101405639249	0.882544198306255
Merged-chr11-114260504-2	chr11	114260004	114261004	+	779.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	62246.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	2.40339186295955	2.30068233344906	2.44425973307446	2.27802290905996	2.169281206853	2.19019802559458	-1.18234453305103	0.174139678547486	1
Merged-chr13-40859682-2	chr13	40859182	40860182	+	553.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023887)	promoter-TSS (NM_023887)	-86.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.4629162492314	4.39245927737843	4.49819707346167	4.46041656508059	4.26748512918527	4.6042055744505	-0.0227547674348637	0.9587950959194	0.990162613547306
Merged-chr10-77537447-2	chr10	77536947	77537947	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7099.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	7.26148286456747	7.01345089899365	7.32304812107298	7.2738644935021	7.21547821185023	7.01395282322077	-0.0352004331672663	0.88770854904039	0.973836995667151
Merged-chr17-5746822-2	chr17	5746322	5747322	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-51835.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.24382987065551	4.27783042646672	4.36875821491268	4.33880716892708	4.11977696857885	4.16590772959642	-0.22851496387347	0.619373750851846	0.889749463061948
Merged-chr16-78376087-7	chr16	78375541	78376541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297747, intron 1 of 4)	CpG	716.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	7.43274655686585	7.28991284767794	6.46429413079757	6.98242790504172	6.75502269187537	6.58328097574562	-0.536342507261309	0.108733968814028	0.440548087699158
Merged-chr11-50321484-4	chr11	50320987	50321987	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	4186.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	5.58401926456108	5.98945203377147	5.39195961360371	5.77306622944115	5.88166292799013	5.80380725961683	0.229737390452729	0.504063034768931	0.837433960485568
Merged-chr10-17721814-4	chr10	17721378	17722378	+	859.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1350.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.48946363876217	6.69866489450697	7.10728477285836	6.70683355484513	7.06454207182319	7.45790090374572	0.497315259108172	0.121778102915216	0.466846919482577
Merged-chr16-38762896-2	chr16	38762396	38763396	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	20637.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.56867172112937	5.15385873332676	5.54868635587731	5.34994162290366	5.28448751800009	5.83202382440181	0.128587031995144	0.734110585381455	0.932325051544019
Merged-chr19-4146556-2	chr19	4146056	4147056	+	769.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_206973)	TTS (NM_206973)	-2107.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	5.66179765219823	5.79576051808851	6.58658293502743	5.94385505915462	5.89115274281601	6.24768723128432	-0.0717039166341432	0.850837979371985	0.964981271430729
Merged-chr1-177139820-4	chr1	177139314	177140314	+	942.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	RMER19B|LTR|ERVK	108953.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	3.75440473568038	4.08199879190449	3.76384261173556	3.89238667469571	3.87609479963848	3.78115678053254	-0.0924752670917602	0.861769260316597	0.967996224966109
Merged-chr2-144290533-4	chr2	144290036	144291036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B2|LTR|ERVL	19632.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	4.71696575847573	4.84590510711304	4.5970654258405	4.44064438318046	4.58123149580782	4.81860394279738	-0.27330722867436	0.516621164492897	0.844296391152365
Merged-chr11-106193696-4	chr11	106193179	106194179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-76.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	6.71213886453674	6.72139927110863	6.79368058346068	6.8393802247856	7.00052504077301	6.91037388653082	0.281497665832082	0.253938864080439	0.651117231535132
Merged-chr7-47007316-4	chr7	47006778	47007778	+	903.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175318, intron 1 of 5)	intron (NM_175318, intron 1 of 5)	1136.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	5.92648801226162	5.87994796809548	5.73889377886827	6.29170139429229	6.30096550894537	5.90786101781812	0.574596123353334	0.0607564643435659	0.319296651619998
Merged-chr17-33640996-1	chr17	33640496	33641496	+	570.0	f1_c57bl6.idr	non-coding (NR_028279, exon 2 of 10)	non-coding (NR_028279, exon 2 of 10)	2901.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	6.50578189982942	6.73578677207251	7.10454132107514	6.5726707108126	6.75273038744567	6.86835422571764	-0.0971884839670462	0.737863248884221	0.933858424870961
Merged-chr6-72159290-2	chr6	72158825	72159825	+	678.549988	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-36128.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.70664600333998	4.78922604411329	4.9411864727857	4.76993475931993	4.68051759750726	4.58514223383043	-0.288966982305251	0.472698412814023	0.820550293768681
Merged-chr5-147913969-3	chr5	147913518	147914518	+	839.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19203.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	2.97090916715196	2.86039348927449	3.09660133536098	3.26725357012563	3.27188545852899	3.39266544683233	1.49878226234063	0.0239496541084412	0.181908061985867
Merged-chr12-112840863-4	chr12	112840362	112841362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-11341.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	6.68740538953199	6.59008524283397	6.8765573622268	6.76476939334777	7.06826224441331	7.15275135707698	0.445407570268133	0.0947859277034683	0.410415125792277
Merged-chr6-97452405-4	chr6	97451886	97452886	+	982.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	6900.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.84963734880283	6.55569421525366	6.7341506089379	6.99473323417132	6.73292940443691	6.8968685572954	0.245581238772543	0.350743410201168	0.738729675221071
Merged-chr2-72170726-4	chr2	72170228	72171228	+	983.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 3 of 26)	ORR1B2|LTR|ERVL-MaLR	-114909.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.80767537624198	3.86216034054013	3.68456604626137	3.74855114009685	3.87380578277435	3.52778554382615	-0.183974621622185	0.739642895753523	0.934245371298156
Merged-chr10-67979536-4	chr10	67979029	67980029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359318)	promoter-TSS (NM_001359318)	-41.0	NM_001359318	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	2.50111352502638	2.7027081310084	2.68878402596599	2.65353618097711	2.42740727619043	2.50788334471556	-0.587402175397581	0.458206040407634	1
Merged-chr8-75092729-4	chr8	75092115	75093115	+	727.212524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1003.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.13264347520258	6.54839332062412	6.03488245677467	6.12388707531508	6.28172761917084	6.11918746009013	-0.147085312723917	0.63394832270816	0.896247399650521
Merged-chr7-81274493-3	chr7	81273989	81274989	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	L1M3|LINE|L1	60685.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	3.94575565099536	3.7623866759141	3.66774315182309	3.91419252632114	3.20676008470804	3.45202734484598	-0.792218535729819	0.219691683767117	0.614023903224422
Merged-chr11-45955225-4	chr11	45954732	45955732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290737)	promoter-TSS (NM_001290737)	-44.0	NM_001290737	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	5.45030764182337	5.5385395861608	5.70239446629974	6.04392018114157	5.78077471542836	5.73830862361027	0.554564973915221	0.0846887423432389	0.385394912984962
Merged-chr12-79751840-3	chr12	79751376	79752376	+	780.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	172857.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.44541194360742	4.46300393794109	4.15929525589696	3.98063108071213	4.09053835257512	4.08126476574813	-0.88403034799103	0.0637026472166558	0.328860272341698
Merged-chr17-45430605-4	chr17	45430106	45431106	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152810, intron 1 of 15)	RLTR13B1|LTR|ERVK	3101.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	3.05373132032965	3.19532993103817	3.44660852292118	2.94569737595159	3.09901651600717	2.9579915239075	-1.00292456458083	0.145298074423779	0.508338649447163
Merged-chr19-5571350-2	chr19	5570850	5571850	+	580.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033448)	TTS (NM_001033448)	3326.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	6.26754618176458	6.06796934346167	6.40436380604656	6.5366180499424	6.49369056883031	6.33115370970283	0.356167044151614	0.205444143757653	0.596047563330878
Merged-chr5-63971264-3	chr5	63970769	63971769	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2372.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	5.52209140296458	5.82260362448559	5.70979975759888	5.61902833336807	5.96118946767058	6.03225563029521	0.341841600131561	0.298055151489303	0.694830164041183
Merged-chr18-68161634-2	chr18	68161134	68162134	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-66312.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.01783364168365	4.03345468725838	4.09800028613245	3.66997879895791	3.56002751678275	3.78126726787209	-1.24315585041893	0.0181671821257469	0.151848808670934
Merged-chr12-73288577-2	chr12	73288077	73289077	+	993.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	1729.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	4.88067509219635	5.13026377950633	5.168175816484	5.49740795961513	5.09576715719696	5.3869474938084	0.550987105397308	0.142445568862991	0.503787601222075
Merged-chr17-73009044-4	chr17	73008561	73009561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90756.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.73167813656858	4.83322181844923	4.77025234411284	4.60640881689746	4.41923557424831	4.79832141358138	-0.415393546004471	0.316837891931708	0.710777474639496
Merged-chr5-137746540-4	chr5	137746093	137747093	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 1 of 4)	intron (NM_023910, intron 1 of 4)	624.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	6.5250617803216	6.6916185360334	6.92767824752071	6.92798366947063	6.91662921264708	6.87439737182128	0.298445412470651	0.252530229378817	0.649921954382832
Merged-chr3-121600583-4	chr3	121600074	121601074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42911.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.82483421871253	3.67198382458405	4.11213071110608	4.22342205520135	4.02399392290713	4.54371884728694	1.16028770977737	0.0291815426308408	0.205200523893095
Merged-chr7-101538722-4	chr7	101538230	101539230	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17072.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.6680650626567	6.4559735159383	6.39128637085346	6.06806823799669	6.30592914013645	6.02519182516742	-0.601820859464014	0.0371854073405367	0.237962542081288
Merged-chr7-83882318-3	chr7	83881709	83882709	+	819.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	2132.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	2.51620197903947	2.48549016244627	2.85487299384575	2.8836316201343	2.60455014869843	2.86914130238057	0.889354438265397	0.259935901946501	0.657488646922558
Merged-chr5-138193925-3	chr5	138193425	138194425	+	846.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177878)	promoter-TSS (NM_177878)	-389.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	6.14812569789643	6.63705657648873	6.27928154670433	6.17561656111669	6.72246288983143	6.25683555008673	0.0699869643521287	0.829905399077605	0.960134151531511
Merged-chr5-112344294-4	chr5	112343788	112344788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359853, exon 2 of 14)	5' UTR (NM_001359853, exon 2 of 14)	1193.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	5.47079368311424	5.61205675041769	4.96692384233623	5.65257050119762	5.86739785462061	5.49764697080605	0.554019866952598	0.143719867417805	0.506028730682277
Merged-chr2-32395923-8	chr2	32395384	32396384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-6.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	6.80697714952752	6.92448812879574	6.87824999397334	6.96715279245603	6.92156302637025	6.89327006223556	0.0891227452022133	0.713207589904074	0.92541785131338
Merged-chr14-103680090-3	chr14	103679574	103680574	+	738.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	19358.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	3.08424153034532	2.87010287579335	2.7031252377916	2.91096346569126	2.78849831212436	3.02510485957311	0.0360983938061103	0.96090571385834	0.990386809359123
Merged-chr7-80091464-5	chr7	80090895	80091895	+	922.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16138.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.69909946937047	4.60648065346588	4.97432721223106	4.77570206917721	4.70924602196074	5.03713448080035	0.18494307574913	0.653686085074788	0.903490112735506
Merged-chr1-170170434-2	chr1	170169934	170170934	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	4530.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	2.39026100296662	2.25105614570398	2.19965215388697	2.59061550687552	2.36860287604862	2.60875474796949	1.53174081728484	0.0811131401898226	1
Merged-chr14-52103016-1	chr14	52102516	52103516	+	692.666687	f1_c57bl6.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	1005.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	5.50422867592337	5.75364951477848	5.83892936922252	5.96937531303603	6.34380952576466	6.22991208472896	0.864154960753561	0.00611360987671409	0.0707118780402594
Merged-chr2-80617578-1	chr2	80617078	80618078	+	551.0	f0_balb.idr	exon (NM_024438, exon 1 of 4)	exon (NM_024438, exon 1 of 4)	364.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	3.71301074254736	3.78931519529097	3.82142529175762	3.97700637383768	3.79959483444002	3.67947237625818	0.175561818538962	0.7402167952601	0.934499978758628
Merged-chr1-153480573-4	chr1	153480078	153481078	+	774.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 4 of 27)	B3|SINE|B2	7082.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.07101610876173	2.87280088616562	3.02353640159603	2.73732650761853	3.02043273874455	3.15182054642924	-0.0545718728546871	0.939035538983095	0.986603666382121
Merged-chr1-165187498-5	chr1	165187024	165188024	+	819.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151712, intron 3 of 8)	intron (NR_151712, intron 3 of 8)	6909.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	4.46496946219016	4.27915271110086	4.27708716740819	4.72935525479036	5.0242865790309	4.77038030739643	1.26241680940624	0.00346501092180131	0.0468731310000396
Merged-chr8-123032908-4	chr8	123032411	123033411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	9373.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.41734850665497	5.24192355703082	5.33221407118803	5.25466016970482	5.31186098600781	5.02140775106742	-0.238985436442214	0.501369527165255	0.835629268815931
Merged-chr7-123170547-7	chr7	123170030	123171030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144925, exon 6 of 24)	exon (NM_144925, exon 6 of 24)	-44336.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	5.95264718164572	5.51287742836234	5.97943996387174	5.04310815878215	5.45064485110626	5.49906751829603	-0.900792720113287	0.0143161574334062	0.128710840380212
Merged-chr8-127780287-2	chr8	127779787	127780787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	480635.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	3.00501271160426	2.86669173602053	2.89396379331912	2.96927000488857	2.94314291422056	3.14326804110424	0.432630173016854	0.526010968059044	0.849272421520383
Merged-chr12-102296135-3	chr12	102295640	102296640	+	799.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12499.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.13934828939151	4.58904965224791	5.12112269978914	4.81369057183467	4.14920567419339	4.85119564381241	-0.753460727161225	0.123219534408088	0.46964642109973
Merged-chr14-21748448-2	chr14	21747948	21748948	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001007268, exon 1 of 8)	exon (NM_001007268, exon 1 of 8)	174.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	2.98289434771311	2.90543515244634	2.70053093049083	3.13713431379469	3.06447436094765	3.09537134809174	1.04881528742018	0.144403439056691	0.50717662222064
Merged-chr9-72449608-3	chr9	72449102	72450102	+	991.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008613, intron 7 of 9)	intron (NM_008613, intron 7 of 9)	11073.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	3.62392737775013	3.49938136747239	3.68925059616812	4.27377549803291	4.72558134466498	4.23292337707906	2.6023892472719	2.22036277940968e-06	0.000109580039234354
Merged-chr16-11253532-4	chr16	11253043	11254043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_035466)	TTS (NR_035466)	782.0	NM_001130008	14852.0	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	8.22311301742196	8.63356781765127	8.34726053147722	8.33356088528791	8.32214141791555	8.44858785352091	-0.0678661466600409	0.762445706682919	0.941561416958418
Merged-chr2-165874526-2	chr2	165874016	165875016	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3921.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.53258325425003	5.39264367623869	5.43323249246283	5.61776021211168	5.41404891075134	5.6632238587553	0.202262924960615	0.541494754797973	0.856856498945272
Merged-chr8-57801395-4	chr8	57800895	57801895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-148340.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.28505101639726	5.20527292498967	5.2698455649392	5.65027478238739	5.81142463918466	5.81094671839985	0.966065016012058	0.00304548759088649	0.0425754253129172
Merged-chr2-131207683-1	chr2	131207183	131208183	+	732.0	f1_c57bl6.idr	Intergenic	Intergenic	-2677.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	4.13122337871623	3.87762076025752	4.15342377497098	3.71802076589218	3.54962241532914	4.17757636047944	-0.687254178314417	0.22311309544311	0.617940766422471
Merged-chr9-124012877-4	chr9	124012368	124013368	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9103.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.28792968997285	6.54998604208045	5.99322190620297	5.92729863749455	6.14237538967369	6.10130084586615	-0.416599351128526	0.179590484409553	0.56110368604883
Merged-chr18-23952083-2	chr18	23951583	23952583	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-2605.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	2.52146015783547	2.52740021600702	2.60245277491987	2.66320942380242	3.03113791066927	2.86513994050064	1.77054767428823	0.0241648819041302	0.182908350175463
Merged-chr6-145865539-4	chr6	145865014	145866014	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-94.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	7.15818062573153	7.26423468546373	6.74590471658716	5.44791735685157	5.40511893532529	4.97908310153357	-3.10439957216996	1.05635413833142e-06	5.67810821332563e-05
Merged-chr11-55021405-2	chr11	55020905	55021905	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 2 of 24)	intron (NR_138556, intron 2 of 24)	12066.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	2.87990181845752	2.47176682685463	2.69173703563981	2.73215913864361	2.59785252644584	3.00374862517113	0.47311878578464	0.554010386455654	0.862575362378324
Merged-chr6-99436484-4	chr6	99435971	99436971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-1126.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.07906075333214	4.03353464662704	4.16083402440387	3.84119170557801	3.34716837747951	3.85396601622382	-1.2639009197154	0.0278481384554228	0.199259429409134
Merged-chr10-41449539-2	chr10	41449039	41450039	+	706.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	-819.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	4.6534943931647	4.4561861581122	4.44513108267458	4.43141336298107	4.75586019470323	4.22931108247281	-0.0449083872783859	0.922719573572334	0.982621045978137
Merged-chr10-59237346-2	chr10	59236846	59237846	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15424.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	7.13333571655517	7.03402844709662	7.19059183104218	7.18291029798297	7.40788482053909	7.17539390264055	0.223623836481791	0.352525612069245	0.740194084833795
Merged-chr10-127482847-1	chr10	127482347	127483347	+	722.0	f1_c57bl6.idr	intron (NM_001359246, intron 14 of 23)	intron (NM_001359246, intron 14 of 23)	-18839.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	4.08838808487477	3.96446023784226	3.9995160519751	3.65533381283842	3.37477705494924	3.60697806664256	-1.61501870394255	0.00377565661707286	0.0498383984802575
Merged-chr17-46111031-4	chr17	46110521	46111521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026768)	promoter-TSS (NM_026768)	17.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	6.75441219708476	6.78120955674114	6.24513463944624	7.03102861666878	6.74456566498663	6.28405627783244	0.16482321187445	0.61584303682097	0.88811014762473
Merged-chr7-73618422-4	chr7	73617909	73618909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-60014.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	8.77080670852312	9.11841354965994	8.44044355752073	8.5588474527802	8.88031701349156	8.31703901812338	-0.275054543191853	0.312777705908074	0.707413942140844
Merged-chr1-97667482-3	chr1	97666980	97667980	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR31_Mm|LTR|ERVK	-5462.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.68270274400442	3.74267370317287	3.45963287277305	3.56934415265993	3.46611042423161	3.69528433857291	-0.234566881993382	0.681116012581043	0.914599647187446
Merged-chr7-4572571-2	chr7	4572071	4573071	+	731.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_207270, intron 7 of 19)	intron (NM_207270, intron 7 of 19)	-25030.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	2.8378702953316	2.79023534277501	3.03283453584972	2.82862845172336	2.65455624938833	2.62241655839879	-0.957514705591069	0.201550588665554	0.591047651513792
Merged-chr12-111696522-4	chr12	111696016	111697016	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16437.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	4.17769919689313	4.2640308688872	4.31043615903666	4.27499790011161	4.26257383957465	4.46150525708514	0.215841426100387	0.633477475080643	0.896059441151508
Merged-chr11-121551466-2	chr11	121550966	121551966	+	795.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 15 of 38)	intron (NM_029878, intron 15 of 38)	-32124.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	4.73303265688973	5.08478738727329	5.43817142595178	5.06046267580665	5.2043189904188	5.0771531364989	0.0275033146546244	0.94602665604642	0.98796006280508
Merged-chr6-48676130-3	chr6	48675639	48676639	+	747.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174960)	promoter-TSS (NM_174960)	4.0	NM_174960	317758.0	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	2.79118605522178	2.90922012002261	2.74234147598152	3.28882287872188	2.9510877315283	3.01194104421169	1.29387598859704	0.073754524642132	0.356924885798681
Merged-chr9-107644788-4	chr9	107644278	107645278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9436.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	5.13256146193097	5.45857924452026	4.98013789391487	5.41575417385073	5.45556655152683	5.42088761797419	0.417919485008057	0.252002501182298	0.64958999373089
Merged-chr2-90570476-2	chr2	90569976	90570976	+	675.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	10171.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.86419092922778	4.83491104750651	5.0850726473547	5.1420632604149	5.10397370611285	5.24460533724479	0.505896287609087	0.171588410284173	0.549748890798409
Merged-chr16-32332197-4	chr16	32331675	32332675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177633)	promoter-TSS (NM_177633)	-77.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	5.7066287327533	5.88558059440743	6.09536747109744	6.03696417866245	6.1954720622355	6.06971531646938	0.367061371603095	0.226370332385935	0.621328050925588
Merged-chr2-166275581-4	chr2	166275083	166276083	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033467, intron 1 of 2)	intron (NR_033467, intron 1 of 2)	1675.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.73529045436082	4.01809563738581	3.57525543428946	3.57178337655062	3.20538122061776	3.53483309698529	-1.259034289124	0.0404887131881634	0.250749970457026
Merged-chr17-34836619-3	chr17	34836113	34837113	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	290.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	6.44058688962523	6.38819020827896	6.47005969796043	6.57248033758831	6.96850323495816	6.47430872467402	0.43503293997198	0.126673148604102	0.475603035080468
Merged-chr5-140736019-2	chr5	140735519	140736519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11892.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	8.30955401339025	8.46932179661862	8.03575663894757	7.82648258914274	8.10806714944317	7.15498281171426	-0.732948932732906	0.0170900997067836	0.145461642430651
Merged-chr13-75794368-4	chr13	75793859	75794859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45526.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.0312861930878	5.13668270558457	4.99579772819609	5.13493787520601	4.75739488736739	5.37684376882212	0.0879079065459165	0.82632933471831	0.959130347937145
Merged-chr2-5708236-3	chr2	5707774	5708774	+	741.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	6488.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.82399542606764	4.1968723253997	4.67525666772797	4.57230435144295	4.56974483312933	4.40725525546903	-0.168740473838538	0.718423417752793	0.927364481477278
Merged-chr7-28277361-2	chr7	28276861	28277861	+	639.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-345.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	3.92049285977644	4.08236465344594	4.19318511558941	3.9163441815081	3.82771395065385	4.03516888529553	-0.428424700745055	0.393357714534786	0.771527442920361
Merged-chr13-5511968-4	chr13	5511487	5512487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	346105.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.65002889363527	4.77045452560017	4.90460501902771	4.92819765423333	5.0181133853634	4.85950536167376	0.382634317340491	0.324908057955008	0.71780685615767
Merged-chr5-67819329-2	chr5	67818829	67819829	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	28102.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	2.94588116330872	2.93080136053603	2.79834917267076	2.91558174504911	3.26908222697727	3.23418779012666	1.15739185436845	0.102394949247963	0.426772136697279
Merged-chr13-34276852-4	chr13	34276377	34277377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	68305.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	6.03505911603182	6.05113028482696	5.87498133492066	6.11550122097928	5.9447368542203	5.75294873738501	-0.0740267735480083	0.807802984864464	0.954568947211821
Merged-chr17-27053495-2	chr17	27052995	27053995	+	972.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3809.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	3.53936891567116	3.55599234578542	3.78914685165988	3.65778374427361	3.64626571067612	3.54776072127972	-0.0153974873932424	0.977976353187876	0.994994154947079
Merged-chr17-8313382-2	chr17	8312875	8313875	+	660.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	intron (NM_134114, intron 1 of 7)	-2257.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	2.89576215273221	2.7307838692445	2.89932219798021	2.89935525460038	2.9054336638844	2.65403257434762	-0.0637841650496603	0.930915599947848	0.984710127493703
Merged-chr10-41473403-2	chr10	41472903	41473903	+	958.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2911.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	3.79609883391619	3.97689455327853	4.05461084312519	3.71546501096664	4.11413925542743	3.88170084732652	-0.0614888319689013	0.907815218416604	0.979049462233659
Merged-chr11-110095825-3	chr11	110095354	110096354	+	872.455566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153145)	promoter-TSS (NM_153145)	83.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	4.07795118076626	4.12608357222263	4.14052203539572	3.62592397698567	3.66951818894496	3.87890033906355	-1.23911833144928	0.016921153081394	0.144422536218754
Merged-chr4-55645890-2	chr4	55645390	55646390	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113415.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.15248175890503	2.1498466803652	2.28662195038892	1.96482747931173	2.04866417519883	2.10105414364425	-1.20788064821784	0.192275769080634	1
Merged-chr3-95951676-2	chr3	95951176	95952176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22419.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	8.73941907048973	8.58993560842951	8.38553114674416	8.35381209740525	8.48603882313882	8.17962346427794	-0.323609242349003	0.149363660389817	0.515759283467481
Merged-chr16-29452776-1	chr16	29452276	29453276	+	575.0	f1_c57bl6.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74044.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	4.87029185300292	4.7390588289404	4.81537992838171	4.58756017933918	4.58949961235874	4.64900870617097	-0.476555945055405	0.233544517274559	0.629836294896575
Merged-chr15-100683174-4	chr15	100682587	100683587	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 4 of 7)	B3A|SINE|B2	4833.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	3.69394364029671	3.7332618191191	3.47271059058194	3.50283281563183	3.60468396154921	3.70760946259169	-0.139654835478237	0.804685776903514	0.953651704501661
Merged-chr11-68966097-4	chr11	68965578	68966578	+	872.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2053.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	2.65823383026229	2.96966183471494	2.87463342430308	2.54013569816593	2.71126177903768	2.63817375618885	-1.10705132065155	0.154826585966915	0.524112919134617
Merged-chr10-80931499-2	chr10	80930999	80931999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008655, intron 3 of 3)	intron (NM_008655, intron 3 of 3)	1408.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	3.91277667243156	3.81681481481741	3.88832437346279	4.53478077931206	4.13962617319976	4.38416805950307	1.39436548444436	0.00509839577667669	0.0619852886887367
Merged-chr17-86963762-2	chr17	86963262	86964262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	651.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	7.69277408397387	7.14190274963672	7.41192485060921	7.75175470926206	7.0464140417082	7.06010107618243	-0.149643496284601	0.632538502229716	0.895571551612667
Merged-chr4-149702033-3	chr4	149701590	149702590	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	-461.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	7.47051119009285	7.20730099880795	7.10492591139218	7.95408494731586	8.10577271739353	7.51911845695463	0.893565288522872	0.000853428323723911	0.0159291305429384
Merged-chr7-7209677-2	chr7	7209177	7210177	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145577, intron 1 of 4)	intron (NM_145577, intron 1 of 4)	321.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	4.01952017480897	4.09256279483238	4.32777422675982	3.93244722698128	4.08202102978686	3.98999700613874	-0.400437783606338	0.417118051095181	0.787792972496192
Merged-chr10-43998448-2	chr10	43997948	43998948	+	678.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172393, exon 2 of 20)	exon (NM_172393, exon 2 of 20)	6398.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	2.91113693652767	2.86298116692038	2.8581670346278	3.06275934446153	2.65754306381591	3.22119803696442	0.560851082714765	0.452085870865645	0.809286173636239
Merged-chr8-120697341-3	chr8	120696831	120697831	+	850.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29011.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	4.42760959404748	4.14236478146754	4.70231690506102	4.18917746047557	4.19176817838416	3.89207428193655	-0.887455952417478	0.08213806168079	0.379123019025808
Merged-chr12-85711355-2	chr12	85710855	85711855	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24635.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.28986540687493	6.21369911116066	6.14376484220622	6.18848272997947	5.71927462480748	5.52796750839019	-0.635921621905982	0.055930793936524	0.304457880879889
Merged-chr13-113597755-2	chr13	113597255	113598255	+	982.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	20809.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.27021280476633	3.88558471950629	3.96742089882215	4.20097657179105	4.34728636871425	4.67933762858251	0.977910059429432	0.0532452253411986	0.295815497775953
Merged-chr18-46198229-3	chr18	46197759	46198759	+	911.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178872, intron 1 of 9)	CpG	559.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	5.27584401145631	5.34621202638324	5.40689032538174	5.57083567747839	5.66716564415718	5.83951494281585	0.667652273510158	0.0422461987933553	0.257525399941209
Merged-chr12-84276537-3	chr12	84276050	84277050	+	707.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-8746.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	4.84825245050567	4.69870491767462	4.53073694905282	4.94593057415303	4.88816404914152	5.15911924970128	0.640750837943119	0.112307105005913	0.44763602190707
Merged-chr17-57300210-2	chr17	57299712	57300712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 9 of 25)	B2_Mm1a|SINE|B2	21112.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.0849458354278	2.63994891049999	2.84324040897609	2.82955923991408	2.66734086291771	3.41379164531828	0.634304758343011	0.434446284308533	0.798410009305253
Merged-chr11-107464344-2	chr11	107463844	107464844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	6376.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.51905138665948	3.67497123624654	3.76831542731731	3.48326984721518	3.48145070757953	3.63692271764363	-0.434682546101912	0.440924696095624	0.802131225979157
Merged-chr2-112268651-2	chr2	112268151	112269151	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	L1_Mus3|LINE|L1	2337.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	5.19055045480999	5.12765560500735	5.14292039487333	5.63063836613829	5.59975129319159	5.30978291617782	0.740910115873774	0.0320810627833302	0.217448767682905
Merged-chr11-97703282-4	chr11	97702783	97703783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-151.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	7.5335201952744	7.65922518225361	7.67552758083819	7.32047013337723	7.84486596900576	7.60416961929813	-0.013096243556028	0.958367604467209	0.990034569981835
Merged-chr4-33247777-4	chr4	33247252	33248252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033225, intron 1 of 1)	CpG	1035.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	8.43834514625533	8.42054696080402	8.27918190907709	8.46172760116033	8.52800953528888	8.01257011409688	-0.0304450958648953	0.898250062073191	0.976286834188723
Merged-chr5-114925706-1	chr5	114925206	114926206	+	722.0	f1_balb.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	2466.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	6.15895591373639	5.89451288441993	5.83286294014328	6.45435440542424	6.18983888478341	6.02057772372468	0.445989734250267	0.151176069383449	0.518506648409409
Merged-chr2-132251554-2	chr2	132251054	132252054	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011045, intron 3 of 5)	intron (NM_011045, intron 3 of 5)	1626.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	3.92377450978361	4.07673715423079	3.97562967078475	4.10749628098583	4.16722888470237	4.23266892593058	0.497721715689079	0.30042349160768	0.697298854445564
Merged-chr4-126321721-4	chr4	126321223	126322223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133883)	promoter-TSS (NM_133883)	-20.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	6.8891641235017	6.99925281097112	6.92598839053199	6.82557016340053	6.69621945742951	6.71486357592608	-0.300148503805555	0.223501182027439	0.618213096008882
Merged-chr8-27042764-7	chr8	27042272	27043272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039077, intron 1 of 4)	CpG	217.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	9.02893954566516	9.17978490180334	8.58004214325833	8.72461067636995	8.8147181860238	8.38801096009772	-0.411097899423858	0.105391429114278	0.433339508714069
Merged-chr4-156235992-4	chr4	156235448	156236448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021303)	promoter-TSS (NM_021303)	-62.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	7.31778226951239	7.51631186888641	7.35808906567188	7.38680208188213	7.32933673168181	7.16885196197652	-0.148160557619154	0.528685517647547	0.850585575598857
Merged-chr7-122208540-4	chr7	122208062	122209062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10934.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	8.0403424541357	7.59809218707544	7.19914628875778	7.78122375956823	7.84695590380883	7.34440315659038	0.0203604822766218	0.946680565301261	0.988007649185823
Merged-chr17-29436647-2	chr17	29436147	29437147	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54398.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.94313558093944	6.8249118134244	6.47835349059082	7.34852000529999	7.82507008390513	7.23255406653984	1.0975213359911	0.000185452311497614	0.00470604328609133
Merged-chr5-24454113-2	chr5	24453613	24454613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1936.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	5.00911823843915	5.12103568175044	5.32605368450456	4.82837211259296	4.99963053076855	5.27127094777768	-0.238714047900694	0.535073735278854	0.853393942325868
Merged-chr7-100226046-4	chr7	100225565	100226565	+	807.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1542.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	4.24376852695912	4.1985769726048	4.28020520910119	4.17435048160859	3.94211286051469	4.25982243234286	-0.328220065111071	0.490043446853453	0.829980359087456
Merged-chr17-26508368-6	chr17	26507883	26508883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	89.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.63094936386904	8.39901699732955	8.08313262412315	8.29678983948006	8.27258654244995	7.70035362936732	-0.377605768628244	0.168139999563397	0.544550563742455
Merged-chr12-102376665-2	chr12	102376165	102377165	+	953.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	63148.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.62718899432631	3.80659214535924	3.7884702350394	3.8839643679336	3.88184417643633	4.38783806465539	0.985879554213419	0.0709562712623124	0.34943947793528
Merged-chr9-103366739-4	chr9	103366199	103367199	+	838.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134426)	promoter-TSS (NM_001134426)	-919.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	5.96305875775346	6.18835566288575	6.31751157709876	6.13420802488245	6.61600698970063	6.17514980599463	0.302851850214093	0.33439273353531	0.724916623845021
Merged-chr2-117312631-4	chr2	117312121	117313121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	30256.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	4.28595703404362	4.48845464540721	4.03894422691454	4.38265616992671	4.29642559437064	4.44018954489917	0.195584870289421	0.678255746122184	0.913379457468915
Merged-chr2-101696415-4	chr2	101695930	101696930	+	923.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303273, intron 6 of 6)	intron (NM_001303273, intron 6 of 6)	18010.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	2.77277995764818	3.02264502797211	3.00082449881475	2.96792650554443	3.14180117675209	3.24325081137567	0.841016815828381	0.224752172714679	0.619654371120589
Merged-chr6-32395587-4	chr6	32395079	32396079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115562.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.25312367727155	5.01766895779905	4.63278092167819	4.95598932647981	5.07564577514179	4.24428003255943	-0.423540858754585	0.617400057688668	0.888810836054056
Merged-chr1-135313793-4	chr1	135313292	135314292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360858)	promoter-TSS (NM_001360858)	-55.0	NM_001360858	21854.0	Mm.2368	NM_011590	ENSMUSG00000062580	Timm17a	Tim17a|mTim17a	translocase of inner mitochondrial membrane 17a	protein-coding	6.36746689449379	6.25674408720381	6.27505356985341	6.61043933033815	6.24870454780339	6.12029739701952	0.0773683867586795	0.79280564106281	0.950051439909475
Merged-chr16-93142314-4	chr16	93141795	93142795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	210894.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	3.61305407673814	3.52219718213303	3.82808993708066	3.68554475471377	3.4226298708811	3.5953192824981	-0.298499462941983	0.601540230610873	0.881943853341137
Merged-chr2-154436337-4	chr2	154435861	154436861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009823)	promoter-TSS (NM_009823)	-123.0	NM_172860	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	6.02538195303241	6.23205148414395	6.26385319876419	6.16919117656427	6.30152009992952	5.92414790865529	-0.0355841252759131	0.905100904168712	0.978232606263309
Merged-chr4-98383225-4	chr4	98382731	98383731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053157)	promoter-TSS (NM_053157)	34.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	7.40149644436435	7.52339542576776	6.71757337773456	7.33946127033536	7.19392957348857	6.90824674744769	-0.160405956817896	0.603170244379663	0.882544198306255
Merged-chr17-27203607-5	chr17	27203034	27204034	+	897.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146075, intron 1 of 8)	intron (NM_146075, intron 1 of 8)	904.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	6.48552839721303	6.30216937344086	6.3808169545721	5.87500848534302	5.47195771679803	5.76216432242942	-1.18938603691974	0.000106155364789421	0.00298512186326399
Merged-chr12-85712824-4	chr12	85712283	85713283	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26063.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	5.80351728376472	5.7080145940653	5.6097042779219	5.32305504775808	5.57496607730933	5.43927748881337	-0.482910147173355	0.141189178393505	0.501979601184758
Merged-chr11-97229673-3	chr11	97229179	97230179	+	853.666626	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 14 of 22)	A-rich|Low_complexity|Low_complexity	-41787.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	3.82219700424206	3.79374946903265	3.88949141713766	5.15547042960524	5.40490318795819	4.94350728265796	3.69143449666408	8.38632472441659e-13	1.61529932330846e-10
Merged-chr16-91817212-1	chr16	91816712	91817712	+	544.0	f1_balb.idr	intron (NM_001110276, intron 11 of 15)	intron (NM_001110276, intron 11 of 15)	87841.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	2.64279617753677	2.59871567188357	2.69585561994661	2.61658879656419	2.46465904995259	2.51583902097184	-0.652101989108333	0.398711442950954	1
Merged-chr1-149961656-4	chr1	149961173	149962173	+	986.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008869)	promoter-TSS (NM_008869)	-383.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.76110175888469	6.99853953807623	6.87665579524281	6.8165878840285	7.0217570733984	6.89166525767082	0.0514060088021455	0.838813706778757	0.962600229831317
Merged-chr12-108627585-4	chr12	108627073	108628073	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-8180.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	3.90002672094455	4.28582242299814	4.31777609772637	4.40010916560725	4.09158617574541	4.06165643138972	0.0464407098448934	0.926527284585384	0.98354871269367
Merged-chr4-59575726-4	chr4	59575223	59576223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5840.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	3.57579992914517	3.3028902084475	3.25348415034269	3.27980681900184	3.16055267675485	3.01316341398492	-0.940416668182553	0.154540428562871	0.523877774629424
Merged-chr12-75413936-3	chr12	75413443	75414443	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	2838.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	3.0582035187924	3.12325256173832	3.30713322741341	2.94926213404869	2.97809489357813	3.32453648304153	-0.325239576774155	0.630266352963945	0.894683393050929
Merged-chr10-111997210-4	chr10	111996720	111997720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	44.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	7.20976062187081	7.55729544109191	7.0793459374236	6.9336833440145	7.41715745646513	6.7125240090216	-0.350125987646822	0.251705921828937	0.649173703610206
Merged-chr2-34373211-4	chr2	34372672	34373672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1127.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	4.58495542545326	4.25743001255338	4.30263110556246	4.33988072832279	4.09797699923094	4.49861278250541	-0.213997651614797	0.65083100676153	0.902681635626215
Merged-chr10-98882690-4	chr10	98882182	98883182	+	905.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31960.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.44651345417505	6.05533647008328	6.12504553045613	6.0758804165074	6.19673375852448	6.0510327103034	-0.187001725526374	0.53199469115955	0.851867550687707
Merged-chr6-94500330-4	chr6	94499816	94500816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026255)	promoter-TSS (NM_026255)	2.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	6.55528803712486	7.08249655567857	7.02657105768665	6.87903647080805	6.890255635752	6.16999000322509	-0.324056426067295	0.327762532359028	0.719913016195391
Merged-chr14-54259205-4	chr14	54258709	54259709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-23.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	5.70677630600054	5.92363130415544	6.13914860378641	6.49631281032957	6.35716317809396	5.94823216125242	0.62959744427532	0.0507556159745911	0.286946140373269
Merged-chr17-8149603-4	chr17	8149113	8150113	+	822.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1781.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	3.334221047873	3.08874966048318	3.56914335722699	3.67812631126372	3.66387423984818	3.42103823229279	0.965245232972117	0.125535558252647	0.474173259389272
Merged-chr8-121581400-2	chr8	121580900	121581900	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2594.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	3.14969406981553	3.1780514820906	3.22890943777809	3.02755727477655	2.97964116867396	3.40640203750752	-0.176131385984416	0.791209866326916	0.949694766870106
Merged-chr13-101867054-4	chr13	101866568	101867568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98851.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.77502984707674	4.67970995012156	4.7039786986862	5.02778967265459	4.91970572401265	4.92326631710259	0.534842521127978	0.165058470429933	0.539748644772511
Merged-chr1-153753268-2	chr1	153752768	153753768	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 3 of 8)	intron (NM_011882, intron 3 of 8)	3842.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	6.98341751858351	7.40604635287466	7.05726197872135	6.97962452523311	7.30409980174449	6.59995299782405	-0.240873787049707	0.424889934765056	0.792848465017231
Merged-chr6-125411234-4	chr6	125410725	125411725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30721.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	5.84559475457824	5.65533900088262	5.16100315718941	5.26318459072675	5.67472981836315	5.39886869584127	-0.248335508980653	0.516644854420023	0.844296391152365
Merged-chr3-69317754-2	chr3	69317254	69318254	+	868.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178726, exon 1 of 4)	exon (NM_178726, exon 1 of 4)	836.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	3.45929409239591	3.08328552221516	3.40688805389299	3.04423926240802	2.90857690092505	3.20398107281694	-1.18831184113225	0.0810242685053368	0.376661675724458
Merged-chr9-21513166-2	chr9	21512666	21513666	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-2932.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	1.92643402913031	1.98406169893898	2.0628605619459	2.14335234878036	2.04812242214264	2.33393296099133	1.44232454205854	0.12483391513018	1
Merged-chr19-5274312-4	chr19	5273823	5274823	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030109, exon 21 of 21)	3' UTR (NM_030109, exon 21 of 21)	-1204.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	6.5297323650928	6.45807686167724	6.67030943478686	6.42080975424171	6.84348669723264	6.86239820161664	0.27675339417408	0.323434384336865	0.71668986599242
Merged-chr1-88286595-2	chr1	88286095	88287095	+	869.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9016.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.62760374303495	3.64359518639345	3.94099702166908	3.31315591053944	3.85025661244183	4.1794129861574	0.262848170506119	0.679981961191548	0.914097821153594
Merged-chr4-99185549-4	chr4	99185044	99186044	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8390.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.83827408293507	6.11596326979628	5.77528411199063	6.19263720030044	6.50679787455375	6.44779187061847	0.780960850641541	0.0102224886197753	0.101962391478087
Merged-chr13-76597161-4	chr13	76596540	76597540	+	890.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	212079.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.55509582865822	2.84320410358474	2.84141582376529	2.65623160539342	2.65488268230015	2.60450354031944	-0.606938053452177	0.428237632551566	1
Merged-chr6-16856806-3	chr6	16856282	16857282	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41659.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	4.62820965565185	4.79834535324635	4.6170314937983	4.63186876345031	4.3699909415748	4.00878213763193	-0.778564788806304	0.104066742935459	0.430206070049439
Merged-chr8-84976584-4	chr8	84976105	84977105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008416)	TTS (NM_008416)	2143.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.69093460552319	8.813878582596	8.36975312368045	8.56122825158954	8.79898139829209	8.36383071493401	-0.0698934041380907	0.771603312229342	0.943614978016208
Merged-chr16-65458445-4	chr16	65457989	65458989	+	975.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-62140.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.17455783117665	3.42181142667191	3.28782156743947	3.08639223308449	3.0886640791764	3.35877233846846	-0.5105961522417	0.42751102473486	0.794365779350231
Merged-chr13-9875245-2	chr13	9874745	9875745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109924.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	2.95550969552051	2.75290023838842	2.8084414002757	3.07196584893549	3.01644492345307	3.06668387078217	0.993739856749855	0.15410993954121	0.523241150332653
Merged-chr11-101095816-2	chr11	101095316	101096316	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-381.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	6.18379671551811	6.53089272910082	6.61400679885169	6.35460710026601	6.66472195597109	6.59127319316858	0.153950279775924	0.595707570624648	0.879596630230779
Merged-chr6-59022834-4	chr6	59022338	59023338	+	889.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	1664.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	4.0286164170104	3.92921443239207	3.87894809437066	3.84640802302312	3.89500268468713	4.09240582735764	-0.0237476245545973	0.962492772792889	0.990858153530085
Merged-chr11-103375480-2	chr11	103374980	103375980	+	930.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11788.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.41905273037289	6.17421368131973	5.79252315470277	5.91401044380677	5.68499534927244	5.71756748382207	-0.679580816785641	0.0392850904526265	0.24603024330405
Merged-chr17-50117461-1	chr17	50116961	50117961	+	1000.0	f1_balb.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	73036.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.11092148955382	2.18299384688921	2.3846736162389	2.10398116888037	1.94530110237013	2.20495907138711	-1.06883374476701	0.253864751568513	1
Merged-chr11-75536144-2	chr11	75535644	75536644	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	4032.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	5.12925308825449	5.05506734626935	5.38446277532314	5.60108673031343	5.5385734979836	5.12026797014076	0.516744567057452	0.162051304000898	0.535342738509256
Merged-chr11-63922417-4	chr11	63921922	63922922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018805)	promoter-TSS (NM_018805)	-138.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.24016659490391	3.07477348126508	3.29244506987198	4.20765070365226	3.97823757679091	4.16151940467399	3.64975260652847	1.28196814944315e-07	8.9040071601724e-06
Merged-chr4-133159316-4	chr4	133158810	133159810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28677.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	8.59323343956275	8.55937990753708	8.32046000305404	8.42586219497091	8.84106913362727	8.47596758815173	0.138396730835801	0.551829881092084	0.861491974444364
Merged-chr2-6284889-4	chr2	6284368	6285368	+	882.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-37889.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.48168808816625	3.49905001385711	3.35000754700917	3.7664813187827	3.44504995650672	3.69918499289401	0.679369775398168	0.246286720303695	0.643378471612549
Merged-chr10-85002216-3	chr10	85001709	85002709	+	758.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	84596.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	3.78025815493862	3.97869784497564	3.90620133631466	3.8051713350184	3.73246858217637	3.48610733232185	-0.657143184980615	0.23360089751926	0.629836294896575
Merged-chr7-98816903-2	chr7	98816403	98817403	+	896.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18209.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	4.46230858349324	4.7339427271956	4.41343026913625	4.3717156400266	4.50246608062559	4.19673287196981	-0.447651905644457	0.326120109471268	0.718551386027045
Merged-chr12-8941306-2	chr12	8940806	8941806	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	4.3536459578059	4.63806178427053	5.21213276333118	4.87070826879558	4.78078510451854	5.15745561009317	0.367288673095207	0.433512741056863	0.797815674529737
Merged-chr2-33467715-4	chr2	33467204	33468204	+	850.1124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355611, intron 1 of 2)	intron (NM_001355611, intron 1 of 2)	828.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	5.90229344994921	6.00205956467254	5.50687156105246	5.92618514817443	5.63307848643515	5.30392392383318	-0.319050029929362	0.380095704259237	0.762308048682461
Merged-chr1-131524523-2	chr1	131524023	131525023	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	2838.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	4.65947043867104	4.63825837959132	4.88509631259917	4.87729114761913	4.57103754748313	4.94943912740037	0.172363231742426	0.677553451578448	0.913010966021872
Merged-chr2-167688275-4	chr2	167687774	167688774	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	-641.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	6.38971563014684	5.96729923826247	6.56658232601984	5.90395435197172	5.15661829018457	6.02632774619944	-1.00789187104227	0.00989247296411365	0.0997132514110198
Merged-chr15-33265869-3	chr15	33265362	33266362	+	912.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	L2c|LINE|L2	140077.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	4.70246342741583	4.98640674891816	5.06747977037684	4.78296039938336	4.98109033896714	5.22484316949955	0.172058017924036	0.668621760229304	0.909301115081719
Merged-chr5-19666664-4	chr5	19666162	19667162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-240856.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.35938062606457	6.50960480684782	6.18538869277649	6.85223255848408	7.01495204003745	6.39642108753497	0.678826907104478	0.0242710375053692	0.183424326177483
Merged-chr1-153431915-4	chr1	153431409	153432409	+	845.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 2 of 9)	ORR1D2|LTR|ERVL-MaLR	6700.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	3.67231605303791	3.76547686500912	3.69687320544375	3.71068362146984	3.67686279237252	3.66089572293705	-0.10101918754	0.850316091013994	0.964858782843783
Merged-chr16-22654567-4	chr16	22654074	22655074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	2657.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	4.35652883628517	4.27027530886175	4.12999206433773	4.55307644063402	4.40442819814933	4.09790018677969	0.294796734274837	0.534264032156008	0.853034531750338
Merged-chr9-66888194-3	chr9	66887681	66888681	+	682.011108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	31524.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.61143824012495	6.35596924461547	6.29063286821201	6.32446192173956	6.22394451670705	6.29018815663959	-0.255512539206951	0.361034574125411	0.747007352397798
Merged-chr4-88440732-2	chr4	88440250	88441250	+	643.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1824.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.30259803941993	4.43816292227333	4.33450157754215	4.72501197236903	4.40910915099938	4.57521989905495	0.529017464351906	0.228762392580748	0.624011970950003
Merged-chr19-46961912-4	chr19	46961395	46962395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	CpG	456.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	7.68150977349884	7.402877123956	7.25035802854509	7.43931983096276	7.17351577825873	7.39835722111683	-0.185708479671713	0.463301577293243	0.8157605781877
Merged-chr19-4097646-3	chr19	4097153	4098153	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026373, intron 1 of 3)	intron (NM_026373, intron 1 of 3)	302.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	7.42254547039571	7.06726582483611	7.07988216344638	7.32630443157623	7.38369342024013	7.28572705539459	0.191839151368329	0.438990477058995	0.800937323779458
Merged-chr10-5823348-2	chr10	5822881	5823881	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175374, intron 1 of 6)	intron (NM_175374, intron 1 of 6)	562.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	5.40419091380297	5.88816542714798	5.85176173318078	5.40642518002686	5.39025519999383	5.49966604805267	-0.565084462296028	0.102989490677417	0.427924106528119
Merged-chr11-30198126-6	chr11	30197679	30198679	+	959.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009260)	promoter-TSS (NM_009260)	78.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	5.85618279385983	6.10739774028823	5.79226049758024	5.46548713115717	5.6825858872117	5.82892277071706	-0.48651168590191	0.13280478302726	0.487669562823071
Merged-chr1-133679652-3	chr1	133679162	133680162	+	818.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172842, exon 6 of 6)	3' UTR (NM_172842, exon 6 of 6)	10354.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	3.22912807619883	3.09122171626695	3.18927049723518	2.89092158712121	2.84119286399529	3.03010465743787	-1.19269479325073	0.0801421467877109	0.374531817853365
Merged-chr7-30422251-4	chr7	30421744	30422744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360907)	promoter-TSS (NM_001360907)	-162.0	NM_001360907	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	8.88167249499588	9.10159910567635	8.72932452394719	8.64373107293491	9.07661263354481	8.54522480650829	-0.18233448725694	0.45890121320402	0.813236440920954
Merged-chr6-24963946-3	chr6	24963457	24964457	+	708.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7832.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	5.50856568867048	5.71224801211322	5.80169865891558	6.34132483018161	6.23813609051081	5.8894238973563	0.886788747435701	0.00514673352082673	0.0623906472612108
Merged-chr18-60911960-4	chr18	60911459	60912459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038499)	promoter-TSS (NM_001038499)	-281.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	4.01448928104635	3.45589681659544	3.81297534438841	3.92424319659732	3.8923405012603	4.02921513638483	0.509855575215167	0.364353950108813	0.749738197211813
Merged-chr6-25978516-2	chr6	25978016	25979016	+	788.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47090.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	3.23565015157477	3.04890719056355	3.05984796319986	2.96863606827161	2.88349496882106	2.95022487120545	-0.873983616866842	0.197122575035478	0.585039778269084
Merged-chr6-134566060-1	chr6	134565560	134566560	+	657.0	f0_balb.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	853.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	6.03901437237769	5.75643001125053	5.86485788903771	6.81071354459316	6.39508540928035	6.12266865713728	0.984818993845664	0.00245560605758478	0.0362216041197508
Merged-chr10-99425472-4	chr10	99424974	99425974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162243.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.40620310901286	3.40889353664809	3.45460072011479	2.89426829002468	3.19504189521061	3.1318448297881	-1.42586204284201	0.0347813377465473	0.22872335239464
Merged-chr1-88588201-1	chr1	88587701	88588701	+	612.0	f0_c57.idr	Intergenic	MTB|LTR|ERVL-MaLR	36684.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	8.17194768847109	8.59185161618005	8.13482750856444	8.16222293008851	8.48533912313389	7.90084352863702	-0.151459713975835	0.568999999407802	0.868833647454249
Merged-chr4-133369665-4	chr4	133369147	133370147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358455)	promoter-TSS (NM_001358455)	-88.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	5.85801619328896	6.03069331585845	6.10812500523567	5.9914052407773	5.96661460087199	5.39691157391202	-0.301484040936363	0.375387977317728	0.758646622209238
Merged-chr2-6721686-4	chr2	6721187	6722187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-25.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	7.77792543556088	8.13940424089641	7.75189357028194	7.8013271376823	8.2706318677343	7.96438124190032	0.177961135150758	0.48612617360171	0.827646894052975
Merged-chr5-117888293-4	chr5	117887798	117888798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	21459.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.27490542326977	6.18286211843519	6.68414093442532	6.14482137988542	5.97527593323284	6.29188959758902	-0.422356543772244	0.171165115179386	0.54913274613843
Merged-chr5-135467402-4	chr5	135466873	135467873	+	791.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	-72827.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.33843414811367	6.31772854761285	6.55308401593304	6.10650143612208	6.18077442656062	6.54657835644613	-0.1964096155182	0.503989458334024	0.837420592739604
Merged-chr7-97251186-2	chr7	97250686	97251686	+	741.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 2 of 9)	B1_Mm|SINE|Alu	74778.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	5.45734455660176	5.54154449108815	5.69159783852881	5.63235554844705	5.94751426753038	5.85236136872338	0.483839023722	0.133718197175043	0.48897703154
Merged-chr9-59544923-4	chr9	59544416	59545416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	5376.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	6.84957328482865	6.44159201042864	6.58449475818235	6.69407388162677	6.70632641381178	6.69336408205312	0.0930634705551089	0.731161839214856	0.931320540641251
Merged-chr4-136132812-3	chr4	136132349	136133349	+	712.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-10973.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	3.4467219091263	3.12079813528202	3.58390201092091	3.42990052714565	3.28437383154268	3.603121412046	0.178488354267521	0.777736073345946	0.945251190347279
Merged-chr17-44792372-2	chr17	44791872	44792872	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	15206.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	3.1204019862849	3.06486228832657	3.07711492961841	2.79189834609077	3.06939116213345	3.14870230195229	-0.345488042005351	0.615881094933581	0.8881342463256
Merged-chr2-6322727-4	chr2	6322234	6323234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080548)	promoter-TSS (NM_001080548)	-23.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.69131985798467	7.3614356035649	6.979409148986	7.39991349581764	6.92907269761665	6.9036569965952	-0.422421791561045	0.163979719486805	0.53801075971892
Merged-chr9-41073699-4	chr9	41073192	41074192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	5814.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.51646162985148	5.23267347563314	5.43923145677886	5.95211706815216	6.13654876489562	5.95551287922224	1.13976844636377	0.000372032288662284	0.00831481672710485
Merged-chr11-106762317-3	chr11	106761830	106762830	+	889.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073165, intron 6 of 9)	L1MB3|LINE|L1	11104.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	4.41423202571617	3.99725340622707	4.53200545769996	4.0506614915688	3.90648229787248	4.31937136525382	-0.645091990215356	0.208929450058786	0.600068238343366
Merged-chr5-122732178-3	chr5	122731702	122732702	+	906.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	24658.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.69269959454224	6.14654344608676	5.6927446660347	5.67107046983918	5.60715302338271	5.33634257485824	-1.22986683242869	0.0014292746140704	0.023856987379653
Merged-chr15-41612421-4	chr15	41611917	41612917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 2 of 17)	MIR3|SINE|MIR	163314.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.24318135319989	6.01689319422085	6.01203506301383	5.75311238986858	6.05384659848167	5.66212374651709	-0.434349954677694	0.170500739825631	0.547846214064376
Merged-chr9-106685855-4	chr9	106685331	106686331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011573)	promoter-TSS (NM_011573)	-15.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	6.39004590932408	6.57510630427204	6.31154065641166	6.54761228584403	6.27569368421294	6.01491630733844	-0.212791927045956	0.477555424194646	0.823237639056184
Merged-chr7-139979600-4	chr7	139979096	139980096	+	867.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-841.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	4.42187642722514	4.22034998638607	4.69120532617777	3.59133986300239	3.59328820059854	3.65402402169996	-2.65040090505729	2.75852992901744e-06	0.000131763351511873
Merged-chr9-45910538-2	chr9	45910038	45911038	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104055, intron 4 of 17)	intron (NR_104055, intron 4 of 17)	-3627.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	4.50505688465736	4.18158874836948	4.83941234196307	4.31796892150255	4.51592448479947	4.76596191225735	0.0348584402100382	0.942197605368736	0.987111610731557
Merged-chr2-25262520-4	chr2	25262020	25263020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175286)	promoter-TSS (NM_175286)	-78.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	5.44613825244877	5.55721774015841	5.34048656988274	5.89004263986345	5.73789818321555	5.46915466248169	0.486676493547236	0.147781912012358	0.513022543064972
Merged-chr6-124493036-4	chr6	124492489	124493489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181344)	promoter-TSS (NM_181344)	-124.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	5.36926365257438	5.04272032376569	5.00363868818386	5.42150050844932	5.23838594288255	5.2112523252132	0.278882364194083	0.449505787304275	0.807826775986513
Merged-chr2-131087288-3	chr2	131086777	131087777	+	944.9722289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-512.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	6.95518631035591	7.02114802393687	7.1600120607638	6.77799229759963	7.050322927847	7.05749186230411	-0.114335239516982	0.649677402415781	0.902262496828066
Merged-chr17-47753422-2	chr17	47752922	47753922	+	819.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	15491.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.04534597627744	6.08701489420435	5.9400121325722	5.90684309028566	5.60817154524238	5.80421260539263	-0.455556287922165	0.13574827882105	0.492515164565358
Merged-chr10-57792611-4	chr10	57792124	57793124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1920.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	6.99529909614485	7.09932770130048	7.16723069475046	6.84339087858927	7.08289566708336	6.95487723832951	-0.178606482959793	0.467905274208035	0.818205691164444
Merged-chr2-69861166-4	chr2	69860653	69861653	+	981.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	-409.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	6.38330447387124	6.53085601723052	6.85467912767658	6.8769657377754	6.89234507547623	7.03248293037807	0.530590072235458	0.0509350983799866	0.287511543721724
Merged-chr3-69695254-2	chr3	69694754	69695754	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26801.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.34697994675422	2.9521246769693	3.34210634560135	3.16995639012484	2.96482347675323	3.61464733893278	0.196890006059473	0.782296181987469	0.946484752418558
Merged-chr18-23880632-2	chr18	23880132	23881132	+	767.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-74056.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.24875577017762	4.31860765955385	4.28920038825017	4.34377406868197	4.14272277374937	4.22019299332623	-0.13661085354841	0.764534568636856	0.941979298344481
Merged-chr2-52943455-2	chr2	52942946	52943946	+	627.5	f0_balb.idr|f0_c57.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.69707071799884	7.67245688605626	7.45868805310827	7.60935108517178	7.47481882421314	7.20341310767609	-0.250694242569679	0.304097492839746	0.700651940638246
Merged-chr11-99041210-5	chr11	99040753	99041753	+	952.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	9.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	4.07427981084412	3.87279248942595	3.76336323052219	3.74977219651202	3.65816220431032	4.02897876833382	-0.329118955073227	0.542811628264414	0.857370348607164
Merged-chr6-5259124-1	chr6	5258624	5259624	+	680.0	f1_balb.idr	Intergenic	IAP-d-int|LTR|ERVK	-2891.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	3.33176469036781	3.44873447150116	3.33623142660154	3.27732068315223	3.41074876816687	3.4074141494379	-0.0332325531489141	0.955660061898146	0.989763164889919
Merged-chr5-92528759-4	chr5	92528258	92529258	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23101.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.30135346987111	4.5299339202974	4.30681330896923	4.55122741864879	4.4590771903447	4.37517746623486	0.196648308270512	0.656530146967025	0.904656053867324
Merged-chr3-79176810-2	chr3	79176310	79177310	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30935.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.15729614792216	6.19653784724363	6.30611128710156	6.21360174474215	6.56593806174737	6.32705579156861	0.279870346014842	0.326748274034505	0.71908990943593
Merged-chr2-18959250-1	chr2	18958750	18959750	+	873.0	f0_balb.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	38871.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.56727439921817	3.66787413142149	3.44657270288416	3.37047016927344	3.23384224033163	3.34638186815508	-0.976537709407667	0.102089599738611	0.426069687497354
Merged-chr10-119239286-8	chr10	119238812	119239812	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027994, intron 1 of 14)	CpG	743.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	7.29967965071591	7.30748542469202	7.23174334436714	7.12053283325624	7.0652799273176	7.20648073122171	-0.231887948023493	0.316438149656451	0.710557877168509
Merged-chr18-60733546-4	chr18	60733060	60734060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-419.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.70240259948046	6.91397434696157	7.02495048683964	6.98652341771712	7.35227573820993	7.03017289389217	0.3954748867354	0.13568237832574	0.492409500987395
Merged-chr1-172346929-3	chr1	172346437	172347437	+	916.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	5727.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	6.74255848030963	6.87741546330848	6.8496333645526	6.98912347890084	7.25997895327714	6.9080706525632	0.37911538407874	0.138971100270416	0.497976284884405
Merged-chr15-83037892-4	chr15	83037403	83038403	+	957.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger16a|DNA|TcMar-Tigger	-4506.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	3.2211333999771	2.99099401236462	3.52251789263789	3.11832623831536	3.28301870625777	3.17039300962846	-0.256900050134062	0.703538590883515	0.922108924938678
Merged-chr16-94607583-3	chr16	94607087	94608087	+	846.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-3832.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.31551284747957	5.39178846171222	5.20328052199026	5.35340483428072	5.64281747132746	5.36630656634086	0.311019985515054	0.37015534936219	0.754629515611739
Merged-chr5-92493652-1	chr5	92493152	92494152	+	552.0	f0_balb.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	12005.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.49714418913319	4.86017070732592	4.87571753763234	4.54679781793924	4.53293396460228	4.83440505869733	-0.272529257422398	0.524869661405567	0.848833934932934
Merged-chr17-81480910-4	chr17	81480410	81481410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257477.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.53868591459891	5.69579638127935	5.45429097740535	5.58559570813377	5.69606036833425	5.32596090099544	-0.0290298125920506	0.931603430351057	0.984929477721491
Merged-chr6-72096379-4	chr6	72095858	72096858	+	955.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1250.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.99315730278697	6.4630953949225	6.06944587384892	6.53212336129512	6.60565922154239	6.36541248801463	0.506892255865806	0.0923348869087665	0.40479458745546
Merged-chr1-152571559-4	chr1	152571043	152572043	+	899.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	53674.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.80144371966472	4.67029268656646	4.6389006340061	4.64721640595788	4.50609717095129	4.74438606383148	-0.193067386810243	0.637979459702961	0.897380718500389
Merged-chr13-92336561-2	chr13	92336016	92337016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-18267.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	5.32444166817849	5.53988975437772	5.16762721007165	4.60391386739727	4.77432510283909	4.70520474966158	-1.41955593041654	0.000261775901853255	0.00624121754768069
Merged-chr7-35156654-4	chr7	35156132	35157132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29753.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	4.1493358174253	3.91609191130382	4.17600373908696	3.93879765911591	3.76026103269103	4.24296995687586	-0.287404556690924	0.581087902616402	0.873228285171611
Merged-chr17-74879709-1	chr17	74879209	74880209	+	616.0	f1_balb.idr	Intergenic	Intergenic	-125820.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	3.2585031283803	3.2887473444652	3.26280770172397	3.45637261045011	3.43625445679069	3.39201017936656	0.628601159153404	0.291933119799578	0.689235268138963
Merged-chr11-20917747-1	chr11	20917247	20918247	+	561.5	f0_balb.idr	Intergenic	Intergenic	-86639.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.63887649218292	2.74350257899941	2.50354215157956	2.80638433092647	2.5240426475648	2.77320198448187	0.369651174191911	0.637934972017456	1
Merged-chr1-39901449-7	chr1	39900959	39901959	+	931.261902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 1 of 29)	CpG	546.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	5.04656089017435	4.41354878900947	4.1818927677575	5.16622230304212	4.24727534268904	4.72207049339764	0.421648615074713	0.624644752854734	0.892121293039105
Merged-chr11-85667729-4	chr11	85667235	85668235	+	971.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	52009.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.20418589323595	5.22103456207776	4.98602463457227	4.68319565072416	4.52298732983449	4.98039695366868	-0.929652220280921	0.0204398531582027	0.163770756050817
Merged-chr3-79018838-2	chr3	79018345	79019345	+	587.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	126042.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	3.3930150656861	3.20839912049275	3.90408722555556	3.2436925085177	3.17542876109729	3.84123440041186	-0.278310792326056	0.691285770771363	0.918256515929559
Merged-chr14-73401319-4	chr14	73400813	73401813	+	977.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16024.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	5.81315570451542	6.03514728720439	6.36625796092747	5.74591755902421	5.89143676810598	5.79763817970027	-0.462504850637058	0.152882845950352	0.521355567452332
Merged-chr10-80901868-5	chr10	80901412	80902412	+	848.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-943.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	3.83619492755988	3.60517721402574	3.50275372764715	3.78568541146764	3.5907226697033	3.63172335115148	0.0318811589818942	0.954966866121543	0.989683851514547
Merged-chr1-105622858-1	chr1	105622358	105623358	+	680.0	f0_balb.idr	intron (NM_013784, intron 14 of 30)	L1MA4A|LINE|L1	40818.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	3.10454089674586	3.04815119390022	3.08769337517938	2.75052928095313	3.09175697943994	2.85619204129916	-0.762528655156789	0.290707719843067	0.688530967042335
Merged-chr4-130811939-4	chr4	130811454	130812454	+	893.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	19417.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.44132837471943	5.47672128068039	5.99982235278859	5.98902212168823	5.93256326031542	5.90349484802211	0.529736423255406	0.115653997079703	0.454022364177327
Merged-chr9-78529668-2	chr9	78529168	78530168	+	586.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-47944.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	2.4443564764695	2.37560941440518	2.55407953653843	2.43435242648542	2.44166434335282	2.30455706995051	-0.368381980084662	0.653958255253585	1
Merged-chr16-92440374-4	chr16	92439836	92440836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25833.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.43438133140123	6.29734891550516	6.04776050458841	5.69214744788275	5.60197944010544	5.84552856574414	-0.995458051464868	0.00114981800933579	0.0200574542810927
Merged-chr19-6858242-4	chr19	6857753	6858753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-42.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	7.81772312521889	7.6481212627419	7.64303758684171	8.12498135464099	8.09199123222086	7.88309601343041	0.477254966322097	0.0315452794542111	0.215142077237881
Merged-chr8-119438976-4	chr8	119438485	119439485	+	762.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1823.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	4.66227243475187	4.66896036748187	5.28457960608237	4.96540317497968	4.94897872512063	5.26089697039572	0.362832656744944	0.397318835643375	0.774186958204669
Merged-chr17-67350598-4	chr17	67350059	67351059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	3900.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.46968134979068	8.82407326998875	8.15909504270266	8.4125701465493	8.94303857401671	8.20054036558702	0.065135247918257	0.824324241782014	0.958538023027357
Merged-chr5-146777725-1	chr5	146777225	146778225	+	746.0	f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	B1_Mur2|SINE|Alu	17231.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.90028250232087	6.173299649909	6.17037435908327	6.25769874511897	6.33592264413328	6.4412088429145	0.435427202753866	0.129403176607419	0.48120215941858
Merged-chr14-57887290-4	chr14	57886760	57887760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	3076.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	5.60442797651167	5.86969572693045	5.8146457682684	5.84109414319531	5.72356249995014	5.85152502413422	0.064054451285679	0.837088471125608	0.962035641067236
Merged-chr12-85659981-2	chr12	85659481	85660481	+	918.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26739.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	3.58943824278103	3.52058146187064	3.71959472322248	3.26045839564695	3.34962441992912	3.36852832683018	-1.06450494805934	0.0728403162019713	0.35460268947482
Merged-chr5-122553958-2	chr5	122553457	122554457	+	629.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009879, intron 18 of 18)	intron (NM_009879, intron 18 of 18)	-51732.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	3.62562630782489	3.5739296465261	3.72714545422908	3.26456899038053	3.10156947802443	3.19710939923907	-1.83827415570247	0.00340173263429198	0.0462023050104131
Merged-chr12-79352340-4	chr12	79351846	79352846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54995.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.79522754893205	4.56107429991178	4.49306126269646	5.68719302005502	5.30745130678681	4.87863790761525	1.52007519317321	0.000496551529696469	0.0104494334049023
Merged-chr15-59511695-3	chr15	59511192	59512192	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	L2a|LINE|L2	-136962.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.86701012716059	3.45518785693014	3.58825046200647	4.42834225666434	4.55308099800763	4.38384872269735	2.43859053339565	1.28416487954245e-05	0.000495836618547417
Merged-chr16-30010413-4	chr16	30009919	30010919	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1752.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	5.20692008400346	5.34646958819788	5.33216897961584	5.64825519380515	5.47641765627929	5.59921119503856	0.536928289391112	0.107208704756645	0.437027799532112
Merged-chr5-3360100-4	chr5	3359596	3360596	+	912.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	16203.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.01470412049733	6.07874720348141	5.95727575677235	5.82904068312161	5.91190144810259	5.82237160325049	-0.285520767114683	0.331218177874419	0.722596533854639
Merged-chr15-85012782-3	chr15	85012264	85013264	+	941.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	3.33638545458582	3.2452759613263	3.14436066401294	2.94815642860024	2.76118902012464	2.91030605346456	-1.82828995449595	0.00997833538617208	0.100180302997093
Merged-chr7-72299871-1	chr7	72299371	72300371	+	833.0	f0_balb.idr	intron (NM_001024703, intron 1 of 22)	intron (NM_001024703, intron 1 of 22)	6724.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	3.20703477734019	3.36019787277306	3.01879143327277	2.60885358373354	2.54546048043597	3.09279225756416	-1.92365418822675	0.191804567333005	0.578614861877813
Merged-chr2-102852236-1	chr2	102851736	102852736	+	593.0	f0_balb.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	49429.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.10109131692348	3.20614531874961	3.17673070801952	2.97678625914117	2.81531659621147	3.30265445600025	-0.542644652971618	0.435724655993038	0.799307241691146
Merged-chr10-80323620-6	chr10	80323179	80324179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008793, exon 10 of 15)	exon (NM_008793, exon 10 of 15)	-3131.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	5.86093632254861	5.73531574006485	5.72235681841761	5.7400500892386	5.38933754442757	5.1242388576389	-0.603511665662911	0.0884784648694881	0.394802788588413
Merged-chr7-114117730-4	chr7	114117226	114118226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025846)	promoter-TSS (NM_025846)	55.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	4.94189790190014	4.25119766020781	4.5459428446609	4.66542953763798	4.19331118552502	4.52940745452781	-0.344845665414661	0.484597631412806	0.82699043674057
Merged-chr17-25045104-2	chr17	25044612	25045612	+	965.8333130000001	f1_balb.idr|f1_c57bl6.idr	exon (NM_134126, exon 13 of 30)	exon (NM_134126, exon 13 of 30)	29026.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	2.95010194559485	2.8389308955636	3.03682976498859	3.00169913154707	3.15560431606596	3.43442918177864	1.18151013435805	0.0860879538802717	0.388606359066581
Merged-chr7-81243259-4	chr7	81242760	81243760	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	29456.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.25409423804657	4.04863706240313	4.08871537448773	4.05591447957656	3.87154913723119	4.29116363294181	-0.179488830951862	0.719222133056481	0.927739599461429
Merged-chr19-53453889-3	chr19	53453408	53454408	+	939.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	10888.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	5.00921880615376	4.78695460549377	4.58281579482553	3.74377072688055	3.46231479702481	3.63211953475137	-3.89260937816205	2.28484567126795e-10	2.80409201496849e-08
Merged-chr6-97810292-2	chr6	97809792	97810792	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	3234.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.62162279269226	3.87240941555547	4.02527138454567	3.67836677055972	3.59767915531214	3.42334761965619	-0.905603102552514	0.116199495604764	0.455137876890266
Merged-chr2-167700954-4	chr2	167700432	167701432	+	973.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9755.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.35999905580723	7.52481926465937	7.40823463598338	7.18105567842524	7.55446414392788	7.01309364690138	-0.222686135194349	0.396660548286475	0.773701467493871
Merged-chr8-24438969-4	chr8	24438467	24439467	+	962.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026931)	promoter-TSS (NM_026931)	-21.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	6.69395710127537	6.98722211327782	6.65036804360742	6.56376363348049	6.67286904828901	6.64268988257639	-0.259631900200638	0.328493757871153	0.720663061720706
Merged-chr9-65303797-3	chr9	65303291	65304291	+	610.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044389, intron 3 of 12)	MTEb|LTR|ERVL-MaLR	9531.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	3.83539951586965	3.86379022775854	3.71536656115955	3.61581074177503	3.56809052128928	3.73328301422848	-0.59076549329383	0.272748072051531	0.669951714189667
Merged-chr6-85937039-4	chr6	85936520	85937520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21049.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	5.02922775746439	5.27214715392108	5.26722272044234	5.2220827401585	5.07553186062179	5.33036816612952	0.0269230718898992	0.940701868214936	0.986881313555047
Merged-chr9-21016724-4	chr9	21016226	21017226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	786.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	7.46193133467856	6.94903762372776	6.83838137442014	7.40768858934773	7.43162457599528	7.32239872243687	0.396834275530285	0.152777871453255	0.521157262312804
Merged-chr4-147430469-2	chr4	147429969	147430969	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER15|LTR|ERVL	-122808.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.82312180046647	4.06551270702323	4.08795010706311	3.70127096829725	3.8893568290663	4.24122928959792	-0.11965008619759	0.823297407225053	0.958285151991023
Merged-chr1-155814837-3	chr1	155814338	155815338	+	923.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1939.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	4.56026133018858	4.55605784051268	4.86537487386838	3.35563628220656	3.23749810424528	3.64730654281336	-5.07985353167509	1.04114415145951e-09	1.14895918507484e-07
Merged-chr7-25278034-2	chr7	25277534	25278534	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-4145.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	5.60703589960292	5.63015328861387	5.63211830777366	5.71947098539982	5.61179515501601	5.52465413994974	0.00345961018908405	0.991268434871012	0.998222399926149
Merged-chr13-81235546-2	chr13	81235046	81236046	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	271472.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.29355209162557	3.33375683357047	3.34449783989355	3.17652806842904	2.91924713809638	3.3611214222544	-0.701010690490347	0.288697107986361	0.686124851873233
Merged-chr1-45916325-3	chr1	45915800	45916800	+	872.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	9294.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.16076226926238	6.12355595939379	6.09381560496875	6.34177762620074	6.28540093347484	6.10989428825376	0.214243760843521	0.445370908169912	0.805110311477591
Merged-chr5-74794335-2	chr5	74793832	74794832	+	625.666626	f0_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-91429.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.4596882454928	3.43480705843423	3.45830635610899	2.9955336146489	2.89263915527226	3.25601611512949	-1.78984225139323	0.00827690191916058	0.0881710990768805
Merged-chr11-78183963-2	chr11	78183463	78184463	+	574.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	-379.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	4.80309376133073	4.59743055622935	4.75560779174358	5.16195736275725	5.3210049406836	4.51273159091944	0.7378837419764	0.0973739859489645	0.416099764936393
Merged-chr1-134076869-6	chr1	134076347	134077347	+	972.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2308.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.49165229107775	4.44936808414134	4.50476877792997	3.94189024519651	4.1279748071612	4.49113263321119	-0.754797544721547	0.11455368856111	0.452032914562748
Merged-chr6-124808085-2	chr6	124807585	124808585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306050)	promoter-TSS (NM_001306050)	-576.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	5.35811596545337	5.1181520752688	5.32375224917263	5.12702963917955	4.85035651188529	5.06440881936506	-0.533386748129482	0.149447504707214	0.515935104605388
Merged-chr10-122570839-4	chr10	122570328	122571328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-937.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.67807414856448	6.85244442931943	6.5314773134528	6.9996593979611	7.17191037852197	6.49694221512328	0.36511818242919	0.221745814733942	0.616585509091023
Merged-chr2-150869664-3	chr2	150869137	150870137	+	811.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-27067.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.13334467045643	5.27771285326205	5.60224678087345	5.37943840184607	5.25282699304819	5.23187733472617	-0.0988659837654484	0.784702714848516	0.947725429960306
Merged-chr18-38186850-2	chr18	38186350	38187350	+	767.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22912.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	2.88473333786374	2.43688583294876	2.69665290985738	2.8682297041631	2.5724278462066	2.95355431279212	0.607632211339792	0.45667586394883	0.811807496313756
Merged-chr12-16870393-2	chr12	16869894	16870894	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24584.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.93147860067192	6.92843759576575	7.18080372831123	6.60412016469223	6.43589738862724	6.43823782700701	-0.809912288755216	0.00192088020202632	0.0299704856272653
Merged-chr18-10029133-3	chr18	10028634	10029634	+	701.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038589, intron 1 of 14)	intron (NM_001038589, intron 1 of 14)	679.0	NM_001360884	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	6.6745953820855	7.00531322105478	6.59898923959662	6.68357849569845	7.05085323882481	6.43397472476671	-0.0257324997096355	0.932449592037758	0.985140380452988
Merged-chr17-23750342-1	chr17	23749842	23750842	+	602.0	f1_balb.idr	intron (NR_015472, intron 2 of 2)	intron (NR_015472, intron 2 of 2)	1106.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	3.7056942037753	3.90268642979885	3.79963505010879	3.83581244509701	3.18914307156029	3.36769406093168	-1.06189252685633	0.0984459513021727	0.41841029007527
Merged-chr19-11771024-2	chr19	11770534	11771534	+	967.4500119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025606, intron 2 of 3)	intron (NM_025606, intron 2 of 3)	619.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	6.78597484021918	6.99068657493121	6.46048719104901	7.17036482670387	7.06096426860617	6.66899484307479	0.333687394916269	0.255768994512212	0.652762828432113
Merged-chr6-124493871-2	chr6	124493371	124494371	+	678.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_181344, exon 2 of 6)	exon (NM_181344, exon 2 of 6)	758.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	3.7886008557931	3.56471229450356	3.65984216023856	4.09344498775649	3.71966628058611	3.93799080658801	0.795805913056439	0.14542957103972	0.508580082323175
Merged-chr7-141382822-2	chr7	141382322	141383322	+	849.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9338.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	2.58462840209361	2.70477014169224	2.83699174148602	2.78353973743351	2.53809242930176	2.66528984231906	-0.244526316136802	0.747852311815715	1
Merged-chr12-52292141-4	chr12	52291620	52292620	+	803.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	188489.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.17734764867242	3.1523797152149	3.20064259199735	3.41132621771414	3.28771939176744	2.95987869828132	0.260340407413636	0.696275528088247	0.919440123947475
Merged-chr9-20978997-4	chr9	20978543	20979543	+	865.2062380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2250.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	5.36583516462901	5.44649961024805	5.64960747986673	5.4564746207957	5.55502211453304	5.83298842816982	0.248646542012823	0.463188167680677	0.815698978949265
Merged-chr16-31938965-4	chr16	31938439	31939439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	5088.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	7.44644592123072	7.33816237276657	7.02574065056688	7.37693162472519	7.55996523438199	7.50753691238341	0.284528814964193	0.250232167933901	0.647489449558232
Merged-chr2-91194273-2	chr2	91193773	91194773	+	727.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 1 of 9)	MIRb|SINE|MIR	762.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	6.42524761079586	6.45419303490234	6.38408008222911	6.82569389107716	6.77268517136888	6.85827870086926	0.623382290439818	0.0142202361293468	0.128083720269613
Merged-chr17-33918847-2	chr17	33918347	33919347	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009318)	promoter-TSS (NM_009318)	-631.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	5.9716498470899	5.08520427126033	5.50925547610414	5.60022842157449	5.6376447687263	5.45282474751444	-0.0207607536621928	0.958222527926068	0.990000537228272
Merged-chr17-27564211-1	chr17	27563711	27564711	+	704.0	f1_balb.idr	TTS (NM_001166536)	TTS (NM_001166536)	1516.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	2.32406985163291	2.36155333195727	2.71877872254351	2.15391085157665	2.48364302983529	2.42992798738342	-0.691193603217338	0.448029058077554	1
Merged-chr14-65096354-2	chr14	65095854	65096854	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018788, intron 1 of 6)	intron (NM_018788, intron 1 of 6)	1752.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.04375847400146	2.90212395840213	2.93713227085569	3.2717512813856	3.15676178584632	3.30600086733765	1.24774104720365	0.060787149341038	0.319387855610097
Merged-chr2-102887256-4	chr2	102886756	102887756	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14409.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.30176303853727	5.31606648643384	5.54785343588799	5.8469725063225	5.37212049392917	5.6638456710069	0.478694850193829	0.172809554937704	0.551474167648098
Merged-chr12-113012609-2	chr12	113012109	113013109	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1899.0	NM_001291445	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	3.71222258502168	3.7379750094662	3.86461402983013	3.72607140435686	3.20163421390347	4.06819683325548	-0.187526081878047	0.771228285709043	0.943589735529798
Merged-chr9-122357233-4	chr9	122356694	122357694	+	879.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359207, intron 1 of 4)	intron (NM_001359207, intron 1 of 4)	5578.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	2.72392740490692	2.8365262019882	2.88988277173018	2.65855400298098	2.77671246752859	3.01893509573176	0.0256244828295593	0.972053607938328	0.993868590220018
Merged-chr15-96666879-4	chr15	96666388	96667388	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-23975.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.04714361982961	2.96617526643711	2.81379120263193	3.03610416366595	2.8281894753864	3.01244864548522	0.0389931269925601	0.955569408726265	0.989763164889919
Merged-chr4-55622267-2	chr4	55621815	55622815	+	650.75	f0_balb.idr|f1_balb.idr	Intergenic	L2c|LINE|L2	-89840.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.86499960050695	3.94605767502419	3.97502018338088	3.5882157329881	3.56121084281735	4.29743925356025	-0.223962965315433	0.704912687368506	0.922601256634819
Merged-chr1-43474253-4	chr1	43473735	43474735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28484.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	7.37480498183346	7.48023702222969	7.30020731969369	7.29689055667782	7.57553769931217	7.37989904993778	0.0548513068926129	0.8166288703879	0.956754861188725
Merged-chr15-5495309-4	chr15	5494805	5495805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.15974811908997	6.2532118846692	6.18904338352646	6.14085859137612	5.92170084093375	6.03177224989278	-0.292422234368737	0.306528000796889	0.702754183171147
Merged-chr14-26669732-7	chr14	26669239	26670239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106132)	promoter-TSS (NR_106132)	107.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	7.00583840295768	7.19036631687724	7.08749139804851	7.29768403638216	7.07466465820877	7.38747883750487	0.232759174045724	0.344582933215145	0.733150745942016
Merged-chr1-77740659-3	chr1	77740160	77741160	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-225572.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.95325092175578	2.87598065295524	2.90439975149491	3.24857979996429	2.87709255705064	3.04000372784337	0.698845536240359	0.314500088435883	0.708849744947754
Merged-chr6-129103337-4	chr6	129102850	129103850	+	951.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2447.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	3.34293445264537	3.25538054631588	3.01701791027549	3.37933278644049	2.98409785690745	3.21537620350534	-0.0644552518985352	0.924324091880853	0.982953019837971
Merged-chr2-112433980-2	chr2	112433480	112434480	+	854.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21045.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	4.66067544453338	4.82919509418664	4.75055922776965	4.43838421398995	4.71611385624643	4.57664415197287	-0.379132604742144	0.362496548189987	0.747950821578409
Merged-chr12-102441643-2	chr12	102441143	102442143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1830.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.40437305676717	4.98468962496126	5.13985196663932	5.73677847966704	5.58037208756452	5.5239526732603	0.829056724280928	0.0199124562268095	0.160955474812547
Merged-chr9-106365513-4	chr9	106365027	106366027	+	825.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3105.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.33281650790918	3.42924427893475	3.88455196207151	3.53616096015645	3.30286641562776	3.86266055702911	0.058247467147266	0.927361380922295	0.983584626679457
Merged-chr17-70831082-2	chr17	70830582	70831582	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15695.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.17263949450306	6.84508878812204	7.3083522265104	6.85372564564859	7.27498319106635	7.03222101186931	-0.0691147010445549	0.802451157302918	0.953198534492307
Merged-chr8-77089368-2	chr8	77088868	77089868	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083906, intron 3 of 8)	RLTR20A3_MM|LTR|ERVK	186860.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	2.07411041212146	2.11215282292952	2.33873400539204	2.11666920363371	2.07224535396634	1.94724313347446	-0.952028930336276	0.31622955634692	1
Merged-chr14-70880274-4	chr14	70879730	70880730	+	996.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9877.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.28673813022369	5.18557411055023	5.3002541075903	4.93636666790301	4.84710413212067	4.72423204904108	-0.87821476662936	0.0184056273862938	0.153027122657747
Merged-chr6-72095370-3	chr6	72094893	72095893	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.24937518103059	3.73472950394977	3.62129447270054	3.79527744370163	3.75581311849835	3.75073232758995	-0.438482256291424	0.444559695879207	0.804325357136705
Merged-chr12-33305235-2	chr12	33304735	33305735	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	2720.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	2.30093663986126	2.33813489339394	2.45905948651825	2.39822396339757	2.26556129837611	2.53280101987343	0.214770547347294	0.795285489942142	1
Merged-chr1-125559410-2	chr1	125558910	125559910	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1185.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	5.29311858635714	5.49206995811837	5.4242060087524	5.12778934720075	5.31673862869219	4.98691002896582	-0.482429880556379	0.180570270673253	0.562547768360139
Merged-chr6-38714169-4	chr6	38713631	38714631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	51062.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	5.60458899029714	5.32188388097846	5.37807318815493	5.39415452600392	5.60116955499887	5.47184739422076	0.101416596753893	0.765334025988829	0.942137701159565
Merged-chr9-102860195-4	chr9	102859693	102860693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	25273.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	2.92534635473951	2.96451988497715	3.26817954710736	2.90631699444851	2.67141656467797	2.9496210437457	-1.03207140436	0.156649883544282	0.527492086420024
Merged-chr2-155373455-4	chr2	155372945	155373945	+	905.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME1|LINE|L1	-8411.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	4.70045693492076	4.67075419082227	4.67908091827581	4.70028862582492	4.59734844687951	4.66551176729087	-0.0742978133152021	0.853361366508591	0.965672676480491
Merged-chr10-128626826-4	chr10	128626304	128627304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-298.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	6.72777345269987	6.90888801654512	6.30308058937077	6.88899115324088	6.919416808263	6.59927492874787	0.207393979459631	0.482022535269528	0.825287168762873
Merged-chr8-125067613-9	chr8	125067188	125068188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	13493.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	8.58661267718941	8.53732640642864	8.12378751091722	8.53936341587255	8.66672940913665	8.27526676210786	0.0979945310781339	0.686794932800053	0.91687527626078
Merged-chr3-148981981-3	chr3	148981490	148982490	+	778.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27355.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.79174499147764	4.68308526581719	4.71713489830034	3.92726551816283	3.70502811683739	3.75690468326416	-2.71858876004451	1.28104346260401e-07	8.9040071601724e-06
Merged-chr3-69163852-2	chr3	69163352	69164352	+	802.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	32619.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	4.42627933368516	4.65569902109407	4.58084289311181	4.27987170677754	4.68670567826107	4.09078628964254	-0.407609860307783	0.402366334800806	0.778019718782707
Merged-chr11-74670504-2	chr11	74670004	74671004	+	868.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081158, exon 26 of 26)	3' UTR (NM_001081158, exon 26 of 26)	21009.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	2.14678474593019	2.31311868999628	2.48247898353773	2.02885937461466	1.97838277401591	2.2436836038692	-1.79039303724894	0.0656272195661882	1
Merged-chr11-117781719-4	chr11	117781214	117782214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	-583.0	NM_001195090	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	8.8628502716558	8.96373507950772	8.67603313423914	8.75268094808292	9.01185100530043	8.57767780585932	-0.060057560879259	0.790857151204161	0.949642127848798
Merged-chr15-103323577-4	chr15	103323076	103324076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	CpG	10762.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.16745446653485	4.62925560288225	5.06722497543348	5.29555528853373	5.11777893580891	5.16537399009023	0.465442486166985	0.241709981478675	0.638803036215977
Merged-chr6-82752766-1	chr6	82752266	82753266	+	608.0	f0_balb.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21688.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.12657576844703	6.01128832289854	5.32183653552645	5.95421040744753	5.96643235992713	5.45826273887788	-0.098164925319173	0.800117294670866	0.952408432552781
Merged-chr18-34935174-2	chr18	34934674	34935674	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3171.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	2.68606191466893	2.3891334913954	2.67156392052697	2.33253070990728	2.28489446741171	2.56151560755382	-1.21003584557662	0.155876224420829	1
Merged-chr12-98318698-2	chr12	98318198	98319198	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50063.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.48778897010312	3.37025889048663	3.43826679319606	3.12529926671308	3.057772529653	3.65987229317636	-0.503633566910095	0.450050230980876	0.808117861931044
Merged-chr1-120449812-4	chr1	120449316	120450316	+	908.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55208.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.68356413409531	2.74894836472733	3.13859704450741	3.57746331932772	3.18142445283664	3.87237138953861	3.11195350932118	0.016791833971643	0.143761181305944
Merged-chr12-111166451-4	chr12	111165958	111166958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	88.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	7.46967422602487	7.25567708797479	7.06216403741213	7.29156849797888	7.13157686125119	6.84277557992377	-0.255863068877936	0.338167412850848	0.728064429944456
Merged-chr3-58517423-3	chr3	58516923	58517923	+	730.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8398.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	5.05878396390695	5.13661431947091	4.74526081317921	5.14488997237143	4.95444007729919	4.81302768381448	-0.0429660870581932	0.913568822544605	0.980728094262566
Merged-chr9-58955728-3	chr9	58955221	58956221	+	806.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 7 of 28)	B3|SINE|B2	80720.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	3.76391745119069	4.02950954718203	3.74518064774362	3.80582328737487	3.94471653215248	3.70693338443343	-0.0908574274156405	0.865783476067638	0.968641478520565
Merged-chr11-5788463-4	chr11	5787943	5788943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-40.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	8.84523158478224	9.12050627417203	8.72276727694465	8.80813649805625	9.190727902577	8.83747877639713	0.0696838885419528	0.76587437213123	0.942315053650124
Merged-chr16-44243467-4	chr16	44242963	44243963	+	974.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	70066.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	4.63623302733472	4.84635782587251	4.52294534510349	4.98310935561702	5.25479727954345	5.22919684785613	1.04139856529656	0.00938805855295605	0.0962851689972103
Merged-chr11-34033476-2	chr11	34032976	34033976	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MIR3|SINE|MIR	-13452.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.1533617479224	7.28512403129364	7.16344513807667	6.99047165909029	7.25563288325533	6.81846698675328	-0.236452129804958	0.357939564420037	0.744492820304024
Merged-chr11-74847576-2	chr11	74847076	74848076	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	16652.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	3.03151877628696	2.89244771730729	3.03862949406313	2.79690643093945	2.75179938420535	3.053237238072	-0.58693554597156	0.406776615586844	0.781073132890231
Merged-chr15-7129481-4	chr15	7128998	7129998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-74.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	4.17065645281695	4.20472363669879	4.44206491305526	4.40768657599245	4.39638716409364	4.54835122825674	0.470287469445516	0.294373753734948	0.691069046969234
Merged-chr6-17615975-4	chr6	17615491	17616491	+	827.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21019.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.0070099939639	4.4776181266597	4.09670923406334	4.2507119337811	4.13852205955704	4.54956259329322	0.268346259197336	0.59534040183228	0.879471010823782
Merged-chr15-59146261-4	chr15	59145758	59146758	+	860.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64232.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.46966280981373	5.39748047661455	5.45087296817104	5.21641399170584	5.10940865263694	4.98550343353451	-0.656405392241109	0.0601040092509054	0.317350999539903
Merged-chr3-158076829-4	chr3	158076340	158077340	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40158.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	3.40820579948567	3.47030342458123	3.35774383487175	3.4567694668263	3.14957287228689	3.53813569217144	-0.117146721333885	0.849398729538301	0.964668152987617
Merged-chr11-64065381-3	chr11	64064878	64065878	+	909.4722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	14094.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	2.63938982147333	3.00947689064595	2.91947305429858	3.52657229938369	3.29004594747418	3.12390510358958	2.10504056078758	0.00686377749913528	0.0770016446202034
Merged-chr9-60997653-2	chr9	60997153	60998153	+	845.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-19416.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.57874361791815	3.15598857458393	3.53594562577373	3.50862720830681	3.15719632395864	3.55421234207138	-0.0807798804028782	0.900524434331143	0.976857574789792
Merged-chr12-69509293-2	chr12	69508793	69509793	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33743.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	2.24577160607918	2.29986459475436	2.39692172348985	2.68323285434835	2.54852196435215	2.60239489990644	1.97586349926999	0.0201978808806228	1
Merged-chr11-49086982-4	chr11	49086416	49087416	+	826.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271676)	promoter-TSS (NM_001271676)	-101.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	7.53588946533907	8.03737863759856	7.51622058921957	7.90225829143287	8.10459268942845	7.79069303121898	0.30861696284431	0.238980585806013	0.635631523582239
Merged-chr4-134852610-8	chr4	134852094	134853094	+	937.3229369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355499, intron 1 of 11)	CpG	751.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	6.47630529138451	5.95778061335203	5.905778110723	6.19814720901851	5.45765492219111	5.86736843085478	-0.468313808562724	0.208430415588194	0.599337828187015
Merged-chr2-131096638-3	chr2	131096135	131097135	+	696.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-9870.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	4.19938723955162	4.34833323553092	4.14453222490165	4.36652839346696	4.100952595862	4.35047692300902	0.0876632982088457	0.851602221081382	0.965314553418056
Merged-chr8-35123466-4	chr8	35122955	35123955	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157765.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.81436952833305	3.7771925303605	3.75759472145465	4.40487618526459	4.3282247403309	4.48942278510494	1.81196119624202	0.000260624056089122	0.00621886532191476
Merged-chr15-59280022-2	chr15	59279522	59280522	+	829.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-26926.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	2.2496271080166	2.39898984790672	2.425190729416	2.60607062469381	2.26185910722979	2.56399390411131	0.772305886916738	0.36294219902925	1
Merged-chr11-11547219-3	chr11	11546683	11547683	+	922.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57917.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	2.77031141221921	2.55876639793678	2.70651194374136	2.87770184885422	2.55078737311343	3.01876032746003	0.746926548246865	0.337279586545717	0.727206670742538
Merged-chr6-120472095-4	chr6	120471601	120472601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 2 of 13)	exon (NM_008359, exon 2 of 13)	8904.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.9112689412641	7.24294129884629	7.26332003417975	7.03258172771551	7.15858511596278	7.20599030368008	-0.0189295972863959	0.940149634304792	0.986792088790777
Merged-chr14-75034392-4	chr14	75033899	75034899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 2 of 13)	intron (NM_198642, intron 2 of 13)	18372.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.2737276364741	5.13685230843151	5.07269946301747	5.20423864759063	5.21330530997459	5.33327767661741	0.159263434807169	0.652020007950503	0.902896807825606
Merged-chr10-40883429-4	chr10	40882941	40883941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	-93.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	6.3626182700428	6.76004496132945	6.18276338572142	6.73495613381936	6.79166958051055	6.12693324258963	0.204035473564907	0.541668898165504	0.856879077002901
Merged-chr8-75033828-7	chr8	75033335	75034335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 1 of 15)	CpG	149.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	8.59857483078807	8.95301639584406	8.17497589390053	8.532529865649	8.62849678455438	7.89175166612435	-0.309072891221833	0.308029059873645	0.70399988465522
Merged-chr16-91362862-3	chr16	91362389	91363389	+	803.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	2.87112366055623	2.89896881205975	3.03209652300308	3.16962763778745	2.93156501142934	3.48187547350084	1.21844196122886	0.0834253675494881	0.382279288707734
Merged-chr17-71684420-4	chr17	71683942	71684942	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	11181.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	2.4534346283613	2.38249510904357	2.60468968326138	2.3257198787294	2.43043371500475	2.67746837848824	0.0110930992143522	0.989214462389922	1
Merged-chr17-46857706-4	chr17	46857173	46858173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-26260.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	8.7497225505258	8.8274241680704	8.52979376067038	8.87112790504064	8.47572893077787	8.54749321362984	-0.0936654644184206	0.681330037232851	0.914669168585067
Merged-chr12-102432914-4	chr12	102432415	102433415	+	966.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6898.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.64026592108141	6.84819084182407	6.9962718241813	6.9314819624141	6.88733333833231	6.61971283922183	-0.00433611850450253	0.987073925225695	0.997161899445921
Merged-chr7-91716905-4	chr7	91716413	91717413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-345481.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	3.71999630196653	3.50870291342985	3.56215539608018	3.59688272886772	3.6229709976223	3.52232572110064	-0.0606615752424059	0.914009977656492	0.980851155332372
Merged-chr4-99929427-4	chr4	99928919	99929919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-32.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	6.5932784565986	7.01889869721	6.95128407463014	6.79933060187671	6.70530096859894	6.54352486463765	-0.272606698731629	0.321816584806972	0.715254938528194
Merged-chr1-153802716-5	chr1	153802242	153803242	+	823.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	41399.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	5.96590460480293	5.8751355574737	5.49019874280442	5.36720716229294	5.13833973815754	4.86365539568566	-1.25286282895727	0.000865981892507304	0.0161181392659834
Merged-chr8-46142035-2	chr8	46141535	46142535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-17889.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	6.63380203008614	6.72862297019379	7.04519472565504	6.86802938120651	7.033901775256	7.00027466744886	0.255973764392638	0.33051034746898	0.721952410959523
Merged-chr14-25485078-2	chr14	25484637	25485637	+	734.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	URR1B|DNA|hAT-Charlie	25952.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.97358264765213	5.56317494633705	5.10675382662849	5.2593814330386	5.4526930765295	5.05767210108695	-0.635291244762751	0.120440637393209	0.464050035016398
Merged-chr7-43443509-4	chr7	43443003	43444003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-569.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	7.60203028445103	7.88253674908771	7.91168703160556	7.53552021433354	7.81581081186289	8.01173314123018	-0.00650627174296306	0.979225805714686	0.995177657748265
Merged-chr1-39615002-4	chr1	39614491	39615491	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36191.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	5.85664351216267	5.7225810689496	6.23341295287203	5.99287805501681	5.68277421498443	6.48276238705671	0.237605493868003	0.516747460361758	0.844297183847098
Merged-chr15-57906004-4	chr15	57905494	57906494	+	703.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6205.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.55036414713019	6.46790311594354	6.52265317844644	6.41059022423382	6.66189347888224	6.43720616724966	0.00514699633055247	0.984675632021327	0.996714110059615
Merged-chr14-55585282-4	chr14	55584776	55585776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	-22.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	5.26250336090891	5.41831676416155	5.59136011753004	5.55657932703606	5.39424369982666	5.7045085134503	0.241210176141011	0.481164573097201	0.824953741430059
Merged-chr6-58918509-3	chr6	58918006	58919006	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 25 of 25)	intron (NM_001361966, intron 25 of 25)	-11380.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	3.44528854650945	3.55337584996195	3.70686616101926	3.33411860882198	3.18261264954279	3.47071571457882	-0.926134319430945	0.126343054669921	0.475273074994284
Merged-chr6-125350208-3	chr6	125349667	125350667	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	444.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	8.40670098422724	8.51127876554103	8.26615253703094	8.74616046406467	8.85554970464192	8.73427164699996	0.523896875700784	0.010713329996853	0.105482754984989
Merged-chr2-35175193-2	chr2	35174693	35175693	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 40 of 44)	exon (NM_012018, exon 40 of 44)	25927.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	5.04469381055987	5.3067821936381	5.54169731312946	4.93864332916856	5.18832003300172	5.16800923577527	-0.406765984068058	0.284228549329537	0.681971485123911
Merged-chr7-127614699-4	chr7	127614171	127615171	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	196.0	NR_155452	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	5.44555309231563	5.0071760951125	5.41154669634456	5.31468909773462	4.58723059927409	5.10266965535703	-0.549968479302137	0.20084165718335	0.590152315800737
Merged-chr13-20794115-4	chr13	20793612	20794612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281854)	promoter-TSS (NM_001281854)	-1.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	7.10582335215408	6.89509961665406	6.72822762779039	7.48167396759528	7.37504429311869	7.12534617974302	0.622702215363626	0.0168222890938722	0.143933062305699
Merged-chr6-148213069-2	chr6	148212569	148213569	+	717.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286560)	promoter-TSS (NM_001286560)	-695.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	6.21673137078726	6.68124527230041	5.8841561917903	6.20056433300954	6.64540524804537	5.94715293867068	-0.00733518515353345	0.984101777874671	0.996464361754829
Merged-chr10-42680774-4	chr10	42680287	42681287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	1871.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	5.01213368575324	4.92436998779819	5.09664293527796	5.23399405160279	4.84242055852001	5.28652774329171	0.245699518609312	0.525388270024082	0.848999112257332
Merged-chr9-106220255-1	chr9	106219755	106220755	+	733.0	f1_balb.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-2343.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	2.91165238198353	2.93390668906317	3.14620188055727	3.1625572913246	3.10280716599839	3.10288926201833	0.580923199606763	0.380768429633255	0.762800321589017
Merged-chr3-100993865-4	chr3	100993356	100994356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167906, exon 9 of 9)	exon (NM_001167906, exon 9 of 9)	-24193.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	6.56388591425979	6.81430379299865	6.63545568381211	6.50520339609922	6.78741773740436	6.67798817091607	-0.0200690516596467	0.940235412088702	0.986792088790777
Merged-chr1-10280380-4	chr1	10279880	10280880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47710.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	4.30054772980131	4.0638098932794	4.2076149572264	4.29538853598477	4.07329775187124	4.71270340069043	0.4852697037786	0.331352366936374	0.722673159460747
Merged-chr7-96477425-4	chr7	96476944	96477944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-135480.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.63994957508252	6.40669318574651	6.56217772754777	5.95849878260987	6.05325014731473	6.31962311720861	-0.709606047927646	0.0133495400721794	0.122861246579571
Merged-chr9-18453174-4	chr9	18452706	18453706	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028935)	TTS (NM_028935)	20353.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	3.34513944500736	3.34188115016035	3.460394790026	3.37274247035501	3.38310036600161	3.42252548292659	0.0467556877499858	0.936649976478656	0.986037792257163
Merged-chr18-54908468-4	chr18	54907980	54908980	+	864.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	81700.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.45269300588126	3.54913093119599	3.68371009230192	3.52536709967041	3.24371030167212	3.80066117038738	-0.0975939076181957	0.873098415481777	0.970371929331986
Merged-chr3-104994097-4	chr3	104993660	104994660	+	834.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32451.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	5.49741868979883	5.37990551072424	5.2992650141218	5.2928712447156	5.18387898625614	4.89431147343394	-0.510111474062965	0.160720639645995	0.533457376986076
Merged-chr9-123999947-3	chr9	123999444	124000444	+	860.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21536.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	4.9313601902306	4.81403244735478	5.23925918993179	4.95161804620289	4.91195321971679	4.79090153125372	-0.228303117577385	0.562999021177316	0.865755360453189
Merged-chr19-6302685-3	chr19	6302184	6303184	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3773.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	3.43841069375543	3.32523095860339	3.57256774116119	3.38275111387978	3.37116350142116	3.31660628137558	-0.325455534493112	0.585177916976934	0.874892547046187
Merged-chr11-115132035-3	chr11	115131531	115132531	+	923.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169153, intron 1 of 6)	L2|LINE|L2	1961.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	5.1404107060774	4.81144689138428	4.90801893922393	5.85702978991336	5.90187998082658	4.97745958355657	1.35704874809879	0.00147238171635525	0.0243905908529739
Merged-chr17-26239060-2	chr17	26238560	26239560	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B1_Mus1|SINE|Alu	5182.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	4.5146677494164	4.48144057346907	4.57825463752043	4.53543966158857	4.60066673670941	4.72209167630091	0.232699087958019	0.57532940257701	0.871033641368775
Merged-chr4-21879823-4	chr4	21879323	21880323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356348)	promoter-TSS (NM_001356348)	-30.0	NM_001356348	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	6.65366750838966	7.00440642367159	6.83115728029458	6.61723198828077	6.54458492154021	6.55349368266662	-0.421338862917479	0.110970385251372	0.444929591673307
Merged-chr1-136466289-4	chr1	136465796	136466796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1552.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	3.50945983699549	3.55592805560108	3.47346697635248	3.95181479001862	3.35250231568687	3.90895428890041	0.838037745897038	0.168820680400543	0.545438812408496
Merged-chr4-138214061-3	chr4	138213558	138214558	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	3.72407222247477	3.5078577801847	3.71861407824037	3.5982359820067	3.30677703271801	3.68736213823154	-0.421492068233548	0.47208624473891	0.820487582506336
Merged-chr18-53245564-4	chr18	53245068	53246068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-94.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.19855870497834	7.90432359945114	7.96953189783116	8.00516173922756	7.87653361383013	7.91798728937834	-0.140364272555388	0.526635388555021	0.849575940031528
Merged-chr7-64342243-3	chr7	64341742	64342742	+	712.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	31853.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.74425619277552	6.61750852950592	6.43657036639891	6.75573918656739	6.78247807561893	6.86053509402556	0.288782851510997	0.267148441988401	0.664550966981069
Merged-chr6-91711805-2	chr6	91711305	91712305	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	27738.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.55950928639837	5.48116218334158	5.97606392841427	5.72567997847173	5.82481892072637	5.87949120544934	0.243800074413072	0.463175810801663	0.815698978949265
Merged-chr13-3526452-4	chr13	3525958	3526958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11617.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	5.96340998621811	5.64896931215896	5.68015605369215	5.58555161858993	5.50093712408791	5.60549889179931	-0.398383040103557	0.218615513002142	0.612741862631882
Merged-chr19-32491229-4	chr19	32490767	32491767	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010799, intron 1 of 4)	intron (NM_010799, intron 1 of 4)	5498.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	5.87313029200441	6.027738306676	5.88322179521124	6.33615595205315	6.34302159228076	6.06564185382136	0.56144519053366	0.0552757342191944	0.302176069159414
Merged-chr10-20054089-4	chr10	20053594	20054594	+	932.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 8 of 29)	intron (NM_008580, intron 8 of 29)	-94826.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	5.63969964800714	5.62062912493725	5.34862744895589	5.64676286641035	5.52615862610111	5.01235587129639	-0.216484489875256	0.563255612751354	0.865925892872195
Merged-chr16-4729209-3	chr16	4728715	4729715	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	RSINE1|SINE|B4	2854.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	5.60784078481111	5.53742160600714	5.87100660271329	5.64071210784328	5.76364554748605	5.81333181240718	0.130126372810987	0.684925727136861	0.916057018456004
Merged-chr18-42511279-4	chr18	42510766	42511766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110344)	promoter-TSS (NR_110344)	-221.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	6.66058987653048	6.68167115724736	6.70436794265803	6.94017462755934	6.97885630551908	6.82521639866226	0.37368586223876	0.130063526275633	0.482195010397444
Merged-chr4-126683283-2	chr4	126682783	126683783	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	RMER6A|LTR|ERVK	5640.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	5.2143305357484	5.35034284262921	5.38459108620964	5.33114723758737	5.74195271673738	5.47757299779925	0.431751211589249	0.216273755098193	0.609723256086966
Merged-chr11-114888966-2	chr11	114888466	114889466	+	614.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1075.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.56762088631187	5.56596727737305	5.36238539899215	5.02444897718151	4.96398376987489	5.09702251322912	-0.982388727740403	0.00495941177767685	0.0608916534155135
Merged-chr7-97383655-4	chr7	97383158	97384158	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199035, intron 7 of 12)	intron (NM_199035, intron 7 of 12)	12041.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	3.7657580977085	3.67112092380846	3.49823216373283	3.67978557686208	3.52242867172148	3.7841128931558	0.013482720851567	0.980868102299186	0.995623353730457
Merged-chr16-92702179-1	chr16	92701679	92702679	+	922.0	f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-4850.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.35067554472659	4.20368247298486	4.48760515401724	3.96806598667738	3.78241277223519	4.3545875271683	-0.850216209995971	0.0973506791159831	0.416021534994747
Merged-chr8-37032940-1	chr8	37032440	37033440	+	559.0	f1_balb.idr	Intergenic	Intergenic	-8702.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	2.67268220687133	2.68502149270452	2.72730866316625	2.60194257377732	2.52295775640182	2.54818152276577	-0.784644579311062	0.302464595856838	1
Merged-chr18-50126994-2	chr18	50126461	50127461	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1240.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	3.95506795875149	4.12812186214598	4.20113379096363	4.0063990908639	4.22953943062372	4.26833954025244	0.221342860595108	0.646936564798475	0.90114476203283
Merged-chr18-50029975-4	chr18	50029492	50030492	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-992.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.28065773862896	3.93336690385908	4.11561623480468	4.47169252764344	4.3215587050143	4.13629155201403	0.555200375249386	0.252546949224355	0.649921954382832
Merged-chr16-57535000-1	chr16	57534500	57535500	+	611.0	f0_balb.idr	intron (NM_001040397, intron 4 of 4)	MER58B|DNA|hAT-Charlie	-14242.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.01063080041978	6.15070379995239	6.2278724321037	6.01444987352833	6.14197377760652	6.14465992459853	-0.0443375034821554	0.877076399619983	0.971489168500291
Merged-chr6-70824659-4	chr6	70824161	70825161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19854.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	4.75361055837192	5.01816493521446	4.73747968000869	4.48740839551529	4.52174837947871	4.32372108768524	-0.939097163506858	0.0277377989453278	0.198830801268517
Merged-chr15-102283825-3	chr15	102283324	102284324	+	951.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4368.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	5.11320855527717	5.27728424757023	5.37286481311614	5.50114252970253	5.48588026549822	5.27965091650694	0.356709473723183	0.302974573988675	0.69972220909689
Merged-chr2-155295705-2	chr2	155295208	155296208	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 10 of 11)	intron (NM_001004721, intron 10 of 11)	19344.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	2.68873538286451	2.51220571436295	2.75481696539489	2.81903860255579	2.70805381511492	2.88796334507654	0.812430342644141	0.27816845957873	0.675475432925552
Merged-chr4-48042895-4	chr4	48042416	48043416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2389.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	8.13464025027229	8.12247437686401	7.80515867468585	8.20753101290169	8.00158719386156	7.78237940152421	-0.0312334207602	0.896963095191448	0.975882336650453
Merged-chr9-75038148-4	chr9	75037697	75038697	+	860.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152135, intron 2 of 4)	intron (NR_152135, intron 2 of 4)	465.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	5.62294596993782	5.39429280585351	5.35013043241863	5.46422199371976	5.20959682983501	5.41359856512132	-0.209115918441703	0.545816302261737	0.85834429351586
Merged-chr16-30390066-7	chr16	30389560	30390560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1530.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	8.1188718683649	8.11463899160322	7.76761494648749	8.20677658031632	8.48676220134818	7.96725521967295	0.322487145572509	0.198697109761034	0.587160238692855
Merged-chr12-82327587-2	chr12	82327087	82328087	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 4 of 23)	(CAAAAA)n|Simple_repeat|Simple_repeat	16238.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	2.73646629116952	2.93482593173619	2.68294114110955	3.05337339476971	2.89489463129371	2.95005638745873	0.844219307257328	0.246710070203828	0.643782025373544
Merged-chr6-84020712-4	chr6	84020219	84021219	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	1333.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	5.81611147305597	5.79593660930011	5.79236918787371	6.06027465731921	6.09913361110585	5.80226093385876	0.355729439013965	0.238975366300586	0.635631523582239
Merged-chr5-31193176-4	chr5	31192671	31193671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	-32.0	NM_010122	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	7.92149180992335	8.28673710733142	7.88581334734129	8.02145748186875	8.06714362741822	7.84277761420524	-0.0926904330932397	0.69606475922278	0.919291538728398
Merged-chr6-116263693-2	chr6	116263193	116264193	+	594.200012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-526.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	4.78157526361384	4.52870281400321	4.80515366874094	4.48664243767533	4.86526321101478	4.67946581290356	-0.0282915727392538	0.946958672803346	0.988007649185823
Merged-chr7-99101894-4	chr7	99101409	99102409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39235.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.51708472375063	7.22188993243451	6.93423789848389	7.53167192166412	7.67304935999096	7.07974110119582	0.304401026693319	0.296061482234435	0.692812588948336
Merged-chr19-56702679-2	chr19	56702179	56703179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19693.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.64710866021622	3.24799462592446	3.30574378081265	3.28939796709729	3.23087060232696	3.26060217016297	-0.620191177767205	0.325887727829197	0.718336010416482
Merged-chr2-180274132-3	chr2	180273612	180274612	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-647.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	6.01359008877937	6.09802833083858	5.98794439834797	6.09278918004726	5.93833608665546	5.87996891729399	-0.106129906831382	0.716826941375423	0.926852456574926
Merged-chr8-13624186-4	chr8	13623673	13624673	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	53414.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	5.80302722074843	6.0800734250364	6.13985728760427	4.86593207119994	4.71357625744097	4.92940523731423	-2.3539016793759	6.36139330910268e-11	8.8219802410636e-09
Merged-chr11-119082059-2	chr11	119081559	119082559	+	564.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007625, exon 5 of 5)	exon (NM_007625, exon 5 of 5)	4178.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	1.70387162284824	1.71122142009594	1.89609868300793	1.58125710925896	1.64691057814089	1.55865537951476	-1.73435961360407	0.124489378244225	1
Merged-chr14-77903725-4	chr14	77903174	77904174	+	792.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178825)	promoter-TSS (NM_178825)	-565.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	6.80871526326992	6.87573181193479	6.4689783178486	7.05998425669428	7.60717240665218	7.06234286872656	0.821937832825967	0.00535396002547693	0.0641734811005308
Merged-chr1-36815292-3	chr1	36814788	36815788	+	859.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	36304.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	3.99155732855746	3.74921553303676	3.82627635648496	3.49643850043051	3.43880124740041	3.52504857471861	-1.31859973055065	0.0188630175216816	0.155432161016447
Merged-chr3-8982547-4	chr3	8982086	8983086	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-18440.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.14722106596888	8.26762968543627	7.91033223348797	8.19701360122555	8.67788372327792	8.06001721995386	0.318598446643621	0.223871446412931	0.618583567117513
Merged-chr6-87597334-2	chr6	87596834	87597834	+	734.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-6591.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	3.6583418910045	3.47907786699748	3.82768010404245	3.9875852284636	3.70383770895383	4.16941725687138	0.976674495587707	0.0814808352516066	0.377539666979378
Merged-chr19-3912889-4	chr19	3912393	3913393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-119.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	7.72428878417725	7.44806583797539	7.52509017941893	7.71431905754002	7.98631525894117	7.19086983585408	0.161004326059467	0.571610057252736	0.869547320544841
Merged-chr14-27347477-3	chr14	27346983	27347983	+	608.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	11446.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.19218809788502	3.02211623192898	3.41825578617844	3.14389033042245	3.01766661019033	3.04323370159689	-0.629756361902367	0.345271134954912	0.733669653925664
Merged-chr16-3733452-3	chr16	3732975	3733975	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-10624.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	5.00846188324318	5.09623580840562	5.12864261280293	5.07287325895622	5.20442411235365	5.22483526904181	0.193477982547924	0.588946606281208	0.876687345082951
Merged-chr17-87974941-4	chr17	87974430	87975430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010830)	promoter-TSS (NM_010830)	-120.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	5.77167474332479	5.86654601627275	5.65467521213468	6.08502734106675	6.13474050176641	6.19511450974027	0.631398328988001	0.0331748004978155	0.222176748548588
Merged-chr8-14823385-3	chr8	14822894	14823894	+	733.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65142.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.03636170124176	2.9608663791713	3.42401446011118	3.65663442265075	3.56509755542706	3.38472027657989	1.60769026048406	0.0161880927261625	0.139960392722208
Merged-chr8-18849501-4	chr8	18848976	18849976	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	intron (NM_026792, intron 1 of 7)	3197.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	3.01905666162554	3.35527368680574	3.33983027797482	3.55970172291455	3.30097467394503	3.23769354352823	0.509542296190288	0.432983726992375	0.79758551656855
Merged-chr13-110569251-4	chr13	110568730	110569730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174186.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.59382060836746	7.61651874849354	7.43021222480845	7.5449581751667	7.86147903837762	7.48723112940018	0.140826353654368	0.559214643058833	0.864901733108576
Merged-chr1-105865099-3	chr1	105864587	105865587	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84364.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.46625607833604	4.29802802419498	4.50534597656968	4.63977434979369	4.6136669816485	4.61297409390193	0.499321655198759	0.237433143829605	0.63386604953073
Merged-chr5-140607249-4	chr5	140606764	140607764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-77.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.55341298341227	6.62587009686909	6.70190620269237	6.76679355566132	6.48292679295095	6.20256952562685	-0.179545874765957	0.532574183118881	0.851971173271146
Merged-chr2-164760600-4	chr2	164760100	164761100	+	790.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133763, intron 8 of 12)	MTD|LTR|ERVL-MaLR	-9329.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	4.07818180479975	3.95421763492782	4.48874206098243	4.2800867574595	4.27086725430017	4.43611409043748	0.396316811654377	0.418054517789352	0.788473936634102
Merged-chr2-4501188-2	chr2	4500688	4501688	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	RSINE1|SINE|B4	-58566.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.83464539017368	5.86025154104641	6.03493284056143	5.85099306910016	6.16700591937954	5.72871889426962	0.0654882510781893	0.836833544127012	0.962001762335242
Merged-chr12-35831484-2	chr12	35830984	35831984	+	870.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94137.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	2.54793940536053	2.53041182736469	2.56339514578017	2.34562683224405	2.3125192439732	2.31193902867347	-1.47024699332143	0.0795447134620519	1
Merged-chr1-154787767-3	chr1	154787233	154788233	+	619.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61813.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	3.93569742650855	3.86117163119685	4.07015742138449	4.10940980170713	3.63631446020824	4.04600532422839	-0.0412674367284254	0.938558534493884	0.986491233981773
Merged-chr8-121635751-3	chr8	121635257	121636257	+	686.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	16176.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	2.39765477001946	2.62142175893307	2.54543361726563	2.21314232529346	2.19152371729109	2.49457331159017	-1.49917768737784	0.0927196679053109	1
Merged-chr4-19879876-3	chr4	19879379	19880379	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 7 of 7)	intron (NM_175406, intron 7 of 7)	42687.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	3.10555880998137	3.17072677238667	3.19289080679612	3.22305287656793	2.90887206524173	3.52916940499501	0.342061560933752	0.61855069716565	0.889457395650025
Merged-chr12-52424805-4	chr12	52424291	52425291	+	977.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55818.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.09447573384902	3.86169912724643	3.85043354432241	3.90512508253646	3.91598647776041	4.24728896844633	0.236738779116732	0.647095949315572	0.901177608466394
Merged-chr8-69092998-5	chr8	69092456	69093456	+	787.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-3734.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	5.90221062724631	5.99686084579318	5.71077660123155	6.22020169574528	6.03022291603363	5.8279578828479	0.275103576665009	0.377368648831026	0.759796030002953
Merged-chr17-83323101-2	chr17	83322601	83323601	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27830.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	2.69230112501694	2.90403216051831	2.85071832358389	2.89235962321157	2.69311048541137	2.60587893603204	-0.422103038382325	0.575484967808276	0.871189906329318
Merged-chr4-126035563-4	chr4	126035046	126036046	+	937.9916380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252651, intron 7 of 14)	intron (NM_001252651, intron 7 of 14)	10887.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	3.9405825042383	4.12670804391829	3.88261918130051	3.81214786354797	3.79979513898824	4.14154695269338	-0.226869485131115	0.662750848236869	0.906804932599005
Merged-chr7-44866483-4	chr7	44865959	44866959	+	938.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 5 of 11)	intron (NM_133949, intron 5 of 11)	3329.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	4.75988042047903	4.38742990072118	4.51516023088064	4.74553541640401	4.51086480256694	4.30837197963919	-0.0652716062524858	0.885326663871051	0.973576084147613
Merged-chr16-22122420-2	chr16	22121920	22122920	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	40879.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	2.89238768572725	3.08980070774249	3.21488817675845	3.13698870590461	3.27766970750298	2.8602784119448	0.173291379882111	0.807612298271214	0.954557080558103
Merged-chr17-10354969-2	chr17	10354469	10355469	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER44B|DNA|TcMar-Tigger	30367.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	3.0301443028612	2.97356493557076	2.62286668255804	3.02919577875738	2.668249271443	3.02205748553086	0.130848440082678	0.869019498577522	0.969772902205443
Merged-chr3-158061131-4	chr3	158060614	158061614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359763, intron 10 of 13)	intron (NM_001359763, intron 10 of 13)	24432.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	5.53715043247346	5.98484064120955	5.75821874697472	5.85150776104679	6.03544762764041	6.10036480917337	0.390301685943241	0.226484406025829	0.62144482956627
Merged-chr15-8712686-3	chr15	8712174	8713174	+	791.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1867.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.33937907119443	3.38328618766309	3.20017636328798	3.69392163837388	3.9421363969475	4.15906430905843	2.22403510288347	0.000389326121053976	0.00861112383855907
Merged-chr11-31892256-2	chr11	31891755	31892755	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	RMER4B|LTR|ERVK	21315.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.87850252318245	4.30990402477128	3.84077284752319	3.73452558424772	3.89808125889604	3.69226328088069	-0.772594787344626	0.161489135023792	0.534459252156486
Merged-chr8-19601778-4	chr8	19601257	19602257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106660.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	3.66641210584161	3.67828755725042	3.80065362541993	3.72442378164904	3.87023936740613	3.86971703025149	0.365918131646724	0.487187251824171	0.828352892507347
Merged-chr6-116186693-4	chr6	116186200	116187200	+	816.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	6674.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.38637980680937	5.27233771150713	5.1802980744515	5.30172225536313	5.02369808307174	5.48757298768581	-0.0315866303188727	0.931393872374633	0.984877393921712
Merged-chr19-56747553-3	chr19	56747061	56748061	+	837.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	25189.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	6.86478069177196	6.92247062044936	7.08598504419711	6.96798579802942	7.07036487474429	7.06795907365061	0.124398287958172	0.609142944216549	0.885053989692691
Merged-chr1-159232979-4	chr1	159232514	159233514	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	814.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	6.70216623228891	6.9994781315605	7.09232712656567	6.79905043374744	7.15049877172345	7.13783678891283	0.15703064016871	0.561174677677	0.865407801976397
Merged-chr11-117780828-4	chr11	117780326	117781326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145439)	promoter-TSS (NM_145439)	-134.0	NM_145439	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	8.39606848636531	8.20404661540729	8.2410822268515	8.07990815503022	8.35872704170192	7.84888922832029	-0.227585603410486	0.340417210070101	0.73014989986887
Merged-chr2-164960791-3	chr2	164960292	164961292	+	945.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355480)	promoter-TSS (NM_001355480)	-54.0	NM_001355481	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	3.04592152562205	2.8049717471888	2.8364348332672	3.34724323361698	3.12825766285924	3.22118963777866	1.50518682132325	0.0321165736269438	0.217632745575798
Merged-chr11-77786413-4	chr11	77785850	77786850	+	986.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	9115.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	7.79408381646683	7.81345529809828	7.5005076379698	6.94414872279755	6.92279396130753	6.78297077210862	-1.22817283119694	4.3991584502001e-07	2.62772084587515e-05
Merged-chr10-81141705-2	chr10	81141205	81142205	+	814.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	5434.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	4.02092325366548	3.89547072948857	4.64479426602059	3.98504856256126	4.04301634110432	4.37791514421876	-0.217500507075542	0.69132584827525	0.918275389711443
Merged-chr8-75065312-2	chr8	75064812	75065812	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 13 of 15)	intron (NM_001136259, intron 13 of 15)	-28306.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.67333436397187	3.68836897900961	3.88901032063764	3.8331794459763	3.88819692590575	3.95750793996675	0.467115995956647	0.369882078918301	0.754352114878
Merged-chr4-132962209-2	chr4	132961709	132962709	+	816.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11886.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.43867325697077	6.5223843831359	6.57928461508849	6.4126955224191	6.79997116029549	6.14750785706298	-0.0207779954974305	0.945336639635078	0.987907378883357
Merged-chr18-61215979-1	chr18	61215479	61216479	+	583.0	f1_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4383.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	3.07168121379098	3.10931840866471	3.32246943726608	2.91255396678002	3.04332910542435	3.39228773512616	-0.181865150275373	0.790225250406832	0.949368241827272
Merged-chr1-64194915-2	chr1	64194415	64195415	+	601.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-73526.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.21358355679417	5.21289191540604	5.44231249021907	5.20828349340852	5.12563142778669	5.33060119727896	-0.139295152565987	0.693201839969434	0.91884092896984
Merged-chr6-4983409-3	chr6	4982907	4983907	+	795.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	80087.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	2.95417980819777	2.90576865015789	3.14303203168597	3.10659350826776	2.70038053659425	3.10207571701104	-0.100054564671617	0.889889328635433	0.974313026039223
Merged-chr3-98027532-4	chr3	98026986	98027986	+	890.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	13948.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.62300075747121	5.43160734525092	5.1190584270198	5.04780305310698	4.88986098344993	4.88176889523732	-0.979460284780815	0.00955665033397667	0.0974044496545994
Merged-chr2-154765846-4	chr2	154765321	154766321	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25289.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	3.15703391801585	3.15867422597553	2.92929803824096	3.32072624837297	3.26752516740216	3.19256983643719	0.721984849961539	0.273231014507919	0.670483530009026
Merged-chr4-3810422-3	chr4	3809907	3810907	+	811.827759	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25248.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.05091429899956	2.81304751633411	3.00483973795549	3.10023112925877	2.9622579551807	3.24799698864018	0.65658708298838	0.338278631889349	0.72820967071764
Merged-chr8-70700073-4	chr8	70699584	70700584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010592, exon 1 of 1)	3' UTR (NM_010592, exon 1 of 1)	2345.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	8.57680209528693	8.47932296628562	8.28320281290214	8.31343965592557	8.35252780795031	8.33880800733024	-0.169418021802601	0.418611027245031	0.788726823651631
Merged-chr7-99981938-2	chr7	99981438	99982438	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1480.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.73206452488219	3.55730556069364	3.82335070418163	3.9979184708672	4.11085059501471	3.99237617679387	1.06465770893923	0.0410187319977624	0.252708918411803
Merged-chr10-128302552-2	chr10	128302052	128303052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	-783.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	7.9485792986322	8.12000433628319	7.77390719956605	7.8794104727226	8.35016308173988	7.88128541185765	0.148759258382394	0.558326796620274	0.864610587604775
Merged-chr4-133651670-4	chr4	133651194	133652194	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-18265.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	6.14960594660085	5.87833934124695	6.3523174908491	6.13205453481689	6.36911952997218	6.48213808261762	0.338079787747411	0.269002289352646	0.666194755066135
Merged-chr11-115635781-2	chr11	115635281	115636281	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-7486.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	3.02557575058628	2.75888624202683	2.94546204651523	2.86860174592319	2.95736596424363	3.18869146782067	0.435627658765224	0.537166544027444	0.854311531235259
Merged-chr5-99377319-2	chr5	99376819	99377819	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-124392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.5046966977305	6.74860040492593	7.07398611247137	7.16542834531626	7.42687653762361	6.85727930627261	0.59689746858276	0.0442587663743003	0.264823254969037
Merged-chr8-72475205-4	chr8	72474707	72475707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	26.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	7.12916000552389	7.4818278525174	7.24826420234496	7.38200375902786	7.51473577578969	7.35146217666483	0.182475219498456	0.454099337744203	0.810100289331925
Merged-chr8-22476583-3	chr8	22476083	22477083	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011394)	promoter-TSS (NM_011394)	-117.0	NM_011394	20516.0	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	7.84464635932561	7.42365434538282	7.3508533999585	7.55695085453578	6.98117773623739	7.16959616924295	-0.448354078638715	0.118226713864852	0.459391445188503
Merged-chr13-110601041-2	chr13	110600541	110601541	+	718.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	205997.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.65003825011623	6.37133218226042	5.77271541459119	6.3021794930464	6.27564604059773	5.483836948257	-0.400308349849373	0.320915990916412	0.714648154651698
Merged-chr2-118491496-5	chr2	118491065	118492065	+	880.534973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11869.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	4.93116393672381	4.69374660335346	4.76322146058436	5.29806698822354	4.73589939001006	5.21545846179058	0.644529110022383	0.121881087451763	0.467005043501857
Merged-chr1-180407333-3	chr1	180406828	180407828	+	767.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	76176.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	3.17327949957402	3.16056241156474	3.0474535669491	2.86472998449011	2.87228279465308	2.93776349859386	-1.14998681841734	0.0925010293410035	0.40516005945182
Merged-chr1-91298290-4	chr1	91297810	91298810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016717)	promoter-TSS (NM_016717)	-28.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	7.14592114975863	7.3634550551209	7.04767978229681	6.78657871215882	7.11002060809353	6.71879518495004	-0.459431402848022	0.0861199455623869	0.388667810942946
Merged-chr3-90125955-4	chr3	90125443	90126443	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	21811.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	5.47670031620899	5.7678908675	5.66256255570027	5.70659945106872	5.90232544228845	5.90037608848973	0.359524350109433	0.25911208986538	0.656762482439337
Merged-chr14-69825050-2	chr14	69824550	69825550	+	998.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15357.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	3.74117214876652	3.67012499608768	3.81085787725709	3.81389339707509	3.62676930819731	3.24983571165575	-0.509306025924854	0.40893296941706	0.782434108702509
Merged-chr12-108643051-2	chr12	108642551	108643551	+	771.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	7298.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	4.90720785997146	4.72081821810697	4.87403436621497	5.30708827412673	4.92503307038615	5.2141014237855	0.684412487415988	0.0782526352857422	0.369397247959209
Merged-chr15-77537680-2	chr15	77537183	77538183	+	815.533325	f0_c57.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-4368.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	4.34312858994456	4.40875139625358	4.73895315956383	4.70137387787767	4.35574377849171	4.94046394869804	0.429521035107218	0.353246156810408	0.740562010982123
Merged-chr19-32185890-2	chr19	32185390	32186390	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	25123.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.03263040621289	3.23658243495758	3.1350866653973	2.93934115680866	2.84219103754399	3.09168192300781	-0.848872151267061	0.2127513336938	0.60532101124957
Merged-chr8-35971671-3	chr8	35971172	35972172	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-88715.0	NR_046181	330737.0	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	3.61753764136988	3.68700083092885	3.94551066171044	3.00917584123206	2.87567455445933	2.99514274281706	-3.93897699318779	2.62110631507215e-06	0.000126286632463534
Merged-chr6-134262233-4	chr6	134261747	134262747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 7 of 8)	intron (NM_001303102, intron 7 of 8)	-134082.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.04317009544394	6.98997180300481	7.06338913938545	6.53334486121897	6.80387386535351	6.77408303550196	-0.494773375695584	0.0500837561771637	0.284977523301486
Merged-chr12-116435459-4	chr12	116434980	116435980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30078.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.93701029319588	4.93731466062013	5.06641706465799	6.31529452058801	6.28803855518971	5.84720606656382	2.26934785345894	3.57768896951367e-11	5.22267269781217e-09
Merged-chr9-57521139-4	chr9	57520601	57521601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-131.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	7.82826316605209	8.20625763072351	7.87826493655748	7.97754871706741	8.31798275214468	7.82580663203684	0.112156925023903	0.659774525679332	0.90561726711854
Merged-chr16-4908108-4	chr16	4907614	4908614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	22014.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	6.67096137057621	6.6417563892926	6.67688797679581	6.79959367848925	7.09118287536952	6.73581258568351	0.363580116718352	0.165001952111387	0.539648660014599
Merged-chr7-113514981-4	chr7	113514485	113515485	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	1151.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	4.82953390845822	4.54644174089186	4.6525163152109	4.92366430663071	4.63690448302859	4.5499547574158	0.0784969517772972	0.852819436514753	0.965544656676077
Merged-chr16-32276073-1	chr16	32275573	32276573	+	549.0	f0_balb.idr	Intergenic	Intergenic	-1388.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	5.04511556678616	4.91074801148456	5.09749056664651	5.19437855141117	5.13601165153173	5.02284881183311	0.230095301283906	0.528917270779979	0.850585575598857
Merged-chr17-24894675-2	chr17	24894199	24895199	+	628.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023260)	promoter-TSS (NM_023260)	388.0	NM_001163102	193838.0	Mm.440199	NM_001163102	ENSMUSG00000073436	Eme2	2810013J18Rik	essential meiotic structure-specific endonuclease subunit 2	protein-coding	5.28996237036164	5.32977091417596	5.49049291451277	5.2069432318558	5.23428801380582	5.22255911683271	-0.28831509846616	0.401952131972538	0.777823507457637
Merged-chr2-118539886-1	chr2	118539386	118540386	+	552.0	f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4701.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.01423330802295	5.31799656569917	5.08046124401928	5.79961598770245	6.45859510274365	5.83010170837597	1.72165796981307	4.87127652021645e-06	0.000216869543442574
Merged-chr3-103587873-4	chr3	103587370	103588370	+	981.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	11744.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	3.84793697750539	3.75174085938694	3.80638652668637	3.98291837187576	3.57441693119132	4.11224668504642	0.308767068057052	0.576045527357535	0.871496930818991
Merged-chr5-137600758-4	chr5	137600251	137601251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254762)	promoter-TSS (NM_001254762)	-43.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	7.76449753525266	7.9823271026939	7.79636708261403	7.59249260077888	7.80898279516991	7.3865776600366	-0.340005142520142	0.158798934002415	0.530592366400552
Merged-chr13-14034113-2	chr13	14033613	14034613	+	803.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178337, intron 1 of 16)	intron (NM_178337, intron 1 of 16)	5525.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	3.48342459737676	3.53549466962722	3.43799101902567	3.4027865184692	3.36863220476069	3.338327250695	-0.447241237937391	0.444759131378618	0.80451094486883
Merged-chr9-107570087-2	chr9	107569587	107570587	+	905.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010489, intron 1 of 3)	intron (NM_010489, intron 1 of 3)	924.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	3.43839345982062	3.40949549481372	3.69980898170219	3.54136866309568	3.4824578525578	3.81630034453024	0.351603740131378	0.54655114976229	0.85884385473937
Merged-chr10-75492108-4	chr10	75491639	75492639	+	944.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	25242.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	4.50888725457371	4.50104218795385	4.19579535756149	4.42989762195979	4.48826226975743	4.26590154993085	-0.0368915219312227	0.935273193611024	0.985837609291391
Merged-chr19-5850369-4	chr19	5849858	5850858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-4878.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	7.50641738575061	7.47460392096006	7.18832730227953	7.47033025036195	7.34882656748485	6.91193551340379	-0.19042406951996	0.479876877297839	0.824391932626821
Merged-chr11-115491826-4	chr11	115491285	115492285	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015807)	promoter-TSS (NM_015807)	29.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	5.78972909295245	5.50422748682594	6.1250557800535	5.96007248346794	5.91368777012058	6.01740228797856	0.255043231799291	0.441420420566616	0.802597583509352
Merged-chr4-130818119-2	chr4	130817619	130818619	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 2 of 4)	intron (NM_011520, intron 2 of 4)	25582.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.4870873442914	4.39950413631965	4.94105807216839	4.9580116366546	4.60721570377853	4.4196684655362	0.152008380144206	0.744286836762062	0.935910073302885
Merged-chr9-62932625-2	chr9	62932125	62933125	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	48254.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	6.7568957699386	6.57488423401186	6.39587736847348	6.83556586553884	6.71996925184287	6.60382933386212	0.210894646847793	0.434696092018833	0.798628466396473
Merged-chr19-59342062-2	chr19	59341572	59342572	+	566.0	f0_balb.idr|f0_c57.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	3708.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	3.86763968415733	3.53216440317363	3.80104868688292	3.56063340941294	3.6797532907282	3.77061603628174	-0.230423567168448	0.678929756825763	0.913553914280182
Merged-chr15-96666449-2	chr15	96665949	96666949	+	752.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-23536.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	3.7580973684173	3.68763508580328	3.45891291451753	3.79876546302336	3.7743474920006	3.59078515284302	0.270483396673501	0.630705443976813	0.894825715837243
Merged-chr7-127876878-4	chr7	127876321	127877321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172749)	promoter-TSS (NM_172749)	15.0	NM_146259	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	6.75248471699189	7.06728551091413	7.5124261929939	7.02469948668181	6.96300670038709	7.21327455395195	-0.112071045407724	0.704061314796554	0.922363248706409
Merged-chr16-91865215-4	chr16	91864678	91865678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	66452.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.56372316608683	6.62072365878288	6.99853142377011	6.66805365474336	6.96232938975325	6.54525396343743	0.0230267086182009	0.936511632406295	0.986037792257163
Merged-chr18-68196091-4	chr18	68195603	68196603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-31843.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.99722291255615	5.99296339568534	5.78766091716129	5.89372086088162	6.05947620690035	5.90068848386222	0.0389110230788723	0.896777552249585	0.97587199430405
Merged-chr11-83556492-4	chr11	83556001	83557001	+	891.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22135.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	3.28443558928829	2.99071225708819	3.11345007979362	3.05043810316035	2.731732911278	2.94497384946055	-1.04786476385403	0.142601462172234	0.504032656746792
Merged-chr2-117346715-4	chr2	117346221	117347221	+	828.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3844.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.06123463503788	3.13667705262658	3.27349310620769	3.16064346603499	3.17208155985808	3.50109684195414	0.5171357836211	0.422709172117687	0.791484614720594
Merged-chr8-75062895-2	chr8	75062395	75063395	+	877.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29209.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	6.77308989969181	6.78117581962807	6.61830933806335	6.81858060394112	6.93445951418703	6.55362626439915	0.0912642987315874	0.730880237419561	0.931175666746392
Merged-chr2-27267393-2	chr2	27266893	27267893	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 28 of 29)	intron (NR_133905, intron 28 of 29)	-20090.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.65138102024127	3.24087728292935	3.5824037181376	3.29387459634362	2.90303067160788	4.14108471372843	0.296335973034255	0.816221348871857	0.956616423430214
Merged-chr13-113381937-4	chr13	113381424	113382424	+	886.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	120920.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.55860904176564	3.7058767722064	3.52285249541584	3.75027682548132	3.47173841028453	3.64843182802642	0.0776238123812664	0.891056038916156	0.974719202878231
Merged-chr18-30504406-2	chr18	30503906	30504906	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231541.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.61014702874455	4.67251170164858	4.39029307042436	5.22343296046439	5.39102986434222	4.90359878236172	1.38146895508932	0.000916971728157255	0.0168468499793572
Merged-chr7-19406104-2	chr7	19405604	19406604	+	958.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2000.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	3.42133171622826	3.23260598531297	3.25949307344493	3.36222746128175	3.14136910347419	3.21413027205215	-0.277586273413087	0.657623053972049	0.904859102731141
Merged-chr3-95530011-4	chr3	95529505	95530505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021281, intron 2 of 7)	intron (NM_021281, intron 2 of 7)	3219.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	5.73342912026682	5.6761342504512	5.49575220515894	5.5499818249379	6.03485647575937	6.0198989961115	0.437842843945085	0.19327814084148	0.58042547704774
Merged-chr3-96661031-4	chr3	96660497	96661497	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-9134.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	5.46809357565757	4.88747099480602	5.06002080943167	4.87054255911041	4.93660675801249	5.5134133110538	-0.0737337851519006	0.864646474929322	0.968297921776544
Merged-chr2-19659134-3	chr2	19658644	19659644	+	878.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027715, exon 1 of 1)	exon (NM_027715, exon 1 of 1)	1082.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	6.15316030897029	6.17192533569955	5.97951590256946	6.19726878596178	6.23929087608092	6.39509821640684	0.273924612742434	0.334527673972655	0.725012195351454
Merged-chr12-100111146-3	chr12	100110638	100111638	+	802.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-1193.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.93903877091212	6.80893678373452	6.95497394600477	6.97048626341167	7.18935291715987	6.87006827426117	0.193491232816636	0.444270976508634	0.804143628616024
Merged-chr6-108327822-4	chr6	108327320	108328320	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	114724.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.47763503258139	4.65829021651392	4.21948042585191	4.10045341069575	3.89985843806082	3.98633761514749	-1.32720103422487	0.00650056059788785	0.0740534867811433
Merged-chr2-5705046-3	chr2	5704545	5705545	+	684.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	9717.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.20760920839281	5.21034348665234	5.32498233600654	5.1435190691503	5.36091090910887	5.58374956796727	0.245981240218379	0.489761778884747	0.829886769204432
Merged-chr14-59364727-2	chr14	59364227	59365227	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199015, intron 1 of 10)	MLTR73|LTR|ERV1	763.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	6.4237541213922	6.82262215580583	6.61176737104364	6.59605512244567	6.9599890862987	6.96880194133028	0.345175818494738	0.222366486128431	0.617311266065276
Merged-chr13-44507254-4	chr13	44506746	44507746	+	696.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67519.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.61901993910674	3.36569640493901	3.58546399201331	3.7586930479781	3.78786633235522	3.60204199183535	0.687654506030139	0.223782476241047	0.618518262184522
Merged-chr12-102390128-4	chr12	102389604	102390604	+	876.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001161365, exon 10 of 10)	exon (NM_001161365, exon 10 of 10)	49709.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.51698958963455	3.08885724671562	3.4678615710477	3.14866228557026	3.09093388100013	3.6375572466208	-0.23011784118	0.736510601092456	0.933162099179542
Merged-chr14-31374539-4	chr14	31374049	31375049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	37911.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	5.89266494270338	5.76863437343174	5.9177320570175	5.75871075913445	5.96362961770181	5.80803150392121	-0.00817024119939563	0.97858131198287	0.995160277495735
Merged-chr11-109473272-4	chr11	109472753	109473753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	-24.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	9.33994050555464	9.51761317934504	8.94873374705547	9.06277482370597	9.35459276512541	8.66134365409947	-0.312972162265282	0.245785897781482	0.642821080898342
Merged-chr12-51704782-3	chr12	51704267	51705267	+	607.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12853.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	4.39002969479977	3.84548269357494	3.94342105303066	4.18945054649862	3.99642383524774	4.29758791911836	0.203482251844692	0.698931663587882	0.920482326683788
Merged-chr13-23689141-4	chr13	23688635	23689635	+	747.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	4936.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	2.55692526463084	2.56999444132221	2.60526381937428	2.43624157707519	2.38132060664853	2.3549237160864	-1.15964240704208	0.153950595874605	1
Merged-chr8-86873656-3	chr8	86873194	86874194	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11564.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.67993559426553	5.67491018976193	5.97587397319376	5.42418226369467	5.66045748415028	5.51073456884366	-0.429855812575806	0.192651803070683	0.579648209361975
Merged-chr10-127599619-4	chr10	127599103	127600103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	21545.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.38695890052084	8.13247660999216	8.28683648294621	8.22133473228783	8.5017037154704	8.15443905856291	0.0487313942867817	0.82970586519881	0.960134151531511
Merged-chr9-64253687-4	chr9	64253129	64254129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008927)	promoter-TSS (NM_008927)	-24.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	6.68095783883204	6.82337806427229	6.87445764157944	6.75588067133062	6.86043210107595	6.67308521633163	-0.0315806509349076	0.90101951280672	0.977060870926891
Merged-chr13-35950017-4	chr13	35949510	35950510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-17896.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.22095828643747	4.05779933152755	3.98153402787127	4.18783710101844	3.66069490866202	4.00158947930563	-0.382084519666965	0.472765747973339	0.820550293768681
Merged-chr15-99474672-4	chr15	99474202	99475202	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029236)	promoter-TSS (NM_029236)	28.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	6.35959883498612	6.31132679891364	6.47732314513845	6.68722614018263	6.56135639219872	6.24389899750193	0.227320740636913	0.420458273815658	0.789722400118582
Merged-chr15-91192055-4	chr15	91191549	91192549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358967)	promoter-TSS (NM_001358967)	-42.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.49800386567469	6.52384370415189	6.52648871685417	6.85249453280967	6.9313919787378	6.55008515083194	0.447743286978581	0.0924232019850647	0.404971565240536
Merged-chr7-16923408-2	chr7	16922908	16923908	+	933.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007590, intron 1 of 5)	intron (NM_007590, intron 1 of 5)	624.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	5.36691098488006	5.3442519587652	5.42131208450048	5.59644727890836	5.58659136751969	5.26145188774956	0.244156742592449	0.472675823312671	0.820550293768681
Merged-chr19-53421483-4	chr19	53420947	53421947	+	987.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30813.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.0196173281024	4.14011637013486	3.58335911096532	3.53926989217536	3.1413106726638	3.28502181203865	-2.24512633281564	0.000647169107028751	0.0128857734045581
Merged-chr7-24972723-4	chr7	24972222	24973222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010261)	promoter-TSS (NM_010261)	6.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	7.21497476584505	7.727655460016	7.53763316691179	7.29010716377177	7.53220422147681	7.6409907642625	-0.0263309606367949	0.92012972238884	0.982271296578706
Merged-chr2-142768948-3	chr2	142768444	142769444	+	881.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	MER2B|DNA|TcMar-Tigger	132520.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.24741828984696	3.16461758951789	3.30139859175103	3.2311854595687	3.15169274519565	3.42506703839611	0.128322657719549	0.837352845177706	0.962133986386607
Merged-chr19-10949305-4	chr19	10948802	10949802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-36.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	7.80179024497581	7.99372891049727	7.61509231949962	7.72319471456919	7.93796171737726	7.6134389243777	-0.0679306687373628	0.778322611339076	0.945439632982223
Merged-chr19-37963606-4	chr19	37963092	37964092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79985.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.88882493061294	6.9370816151491	6.9055102762051	7.11933163788231	7.23523857505174	7.43856629651961	0.536962758445109	0.0280458921507916	0.20020955680191
Merged-chr18-24208207-4	chr18	24207772	24208772	+	763.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	2278.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	4.46592413273487	4.75752724738536	4.8363759536916	4.96669088422477	4.70897836971839	5.07199127098554	0.511228925795082	0.219955439879198	0.614292007430178
Merged-chr17-17862736-1	chr17	17862236	17863236	+	631.0	f1_balb.idr	Intergenic	Intergenic	-7548.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	3.33934276928449	3.79646438410636	3.34497497567818	3.36742602349786	3.01914308280378	3.41781580990439	-0.927830801419088	0.165714603171907	0.540863657924297
Merged-chr8-66386241-4	chr8	66385770	66386770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166375)	promoter-TSS (NM_001166375)	-31.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	6.51514385206023	6.71297988023273	6.61512944646511	7.036747932333	7.10180754235744	6.45322417527584	0.452976626992583	0.123210183198383	0.46964642109973
Merged-chr1-78485474-4	chr1	78484988	78485988	+	885.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2-int|LTR|ERVL-MaLR	3409.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	3.45145287335402	3.28149186454988	3.31577438114791	3.61475695024081	3.24183675946935	3.60693436193645	0.528879189507725	0.3909307698723	0.770052731867201
Merged-chr5-129874126-4	chr5	129873614	129874614	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_145487, intron 2 of 8)	intron (NR_145487, intron 2 of 8)	4974.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	4.35128095309889	4.56473712821439	4.53699772527788	4.57890455455706	4.49409846369702	4.52058531815828	0.110918371719104	0.79466351292183	0.950816910994853
Merged-chr11-94346400-2	chr11	94345900	94346900	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	18399.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	2.85109241416683	2.84222955120198	3.35818352387748	3.02933619136022	2.6936951674084	3.16702144470248	-0.266517143789184	0.72601563758149	0.929743505822386
Merged-chr2-26963542-2	chr2	26963042	26964042	+	613.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	844.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	6.71608082801301	6.79806946379498	6.80549289630384	6.88744016750709	7.33550946050111	7.09851366586763	0.542892002830437	0.0381243190399908	0.241621474497643
Merged-chr2-122375609-4	chr2	122375103	122376103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6685.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	6.93421043872018	7.01682901069181	6.61231079631665	6.72350697826675	7.16393889119288	6.99527582829996	0.158028481691115	0.570277054747375	0.869118900111945
Merged-chr13-52041547-4	chr13	52041040	52042040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55201.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	6.82549202027412	7.33989004734585	7.14690058399335	7.09126419283338	7.65695486170216	6.93334868472836	0.232387978221417	0.453557934987491	0.80983494973791
Merged-chr15-39609362-2	chr15	39608862	39609862	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-50149.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	4.36494289453788	4.53733298683672	4.62330820577952	4.13798178029421	4.32347809327709	4.76061197871794	-0.215482989255279	0.649202869177952	0.902118776529041
Merged-chr12-70713250-1	chr12	70712750	70713750	+	556.0	f1_balb.idr	Intergenic	Intergenic	-112264.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	4.90953330666266	4.79118962854913	4.8265030091472	4.53405810039022	4.50576640772394	4.44250299942209	-0.824004405019413	0.0434414814316528	0.261876315798375
Merged-chr13-5785670-4	chr13	5785152	5786152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR40a|LTR|ERVL	72440.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.37210449879384	4.37407731536396	4.12449353907868	4.49975634331184	4.10769181313515	4.29040747262007	0.00838539835703913	0.985906461734703	0.996977600359987
Merged-chr16-52061334-4	chr16	52060830	52061830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	29781.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	8.57390058877173	8.81373560572628	8.28108334650048	8.37377499059715	8.98719603555547	8.27770180895029	0.0222803772283596	0.937298370535172	0.986057836872162
Merged-chr2-30783532-4	chr2	30783027	30784027	+	982.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	18210.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.91097635928399	6.16146525729372	6.09624019827452	6.13832253169163	5.83787050287438	6.13538576107371	-0.0408654125692106	0.892939177099123	0.975146620821922
Merged-chr18-62047799-2	chr18	62047299	62048299	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94724.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.80688792424601	5.70494569773865	5.95867633392092	5.55052973981729	5.77739113028245	5.97491401007244	-0.0861046111650534	0.789234762315459	0.949154090987258
Merged-chr12-24593376-4	chr12	24592863	24593863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	12644.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	6.16102918482752	6.68347331618461	6.38750738286713	6.38559008155419	6.2317429134753	6.27098765323708	-0.224211861417847	0.45260530631765	0.809456767794566
Merged-chr16-45644661-3	chr16	45644167	45645167	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145389, intron 2 of 5)	intron (NM_145389, intron 2 of 5)	9451.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	2.76039709947931	2.8323387294725	2.92873905704406	3.04735943203664	3.17795844564467	3.34098265158787	1.6743332555545	0.0167828638796221	0.143743544796253
Merged-chr15-102136289-4	chr15	102135780	102136780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033277)	promoter-TSS (NM_001033277)	-65.0	NM_001033277	223918.0	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	5.2914970837389	5.21838121842997	5.36389761016085	5.2705608977661	5.03374360530549	5.10657929229509	-0.306225033075074	0.388287369861147	0.76820261821444
Merged-chr4-134913617-3	chr4	134913120	134914120	+	916.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027935, intron 1 of 6)	B2_Mm2|SINE|B2	1296.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	4.07032494696156	3.81297101944313	4.23676261301366	3.72506936876477	3.85297402211485	3.94589489155403	-0.616808908471769	0.240991484927109	0.638022828528266
Merged-chr12-69364197-4	chr12	69363706	69364706	+	965.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7030.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	6.37165693744761	6.35766080456947	6.54069772715908	6.2539402914069	6.5017558286119	6.5492730056749	0.033025966671081	0.904659296927542	0.978142219404953
Merged-chr6-146209556-2	chr6	146209056	146210056	+	856.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275434.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.66665503714628	3.66424059099848	3.7565242105807	3.34197372161814	3.47110300368965	3.57048653429704	-0.834236711738816	0.142860583885133	0.504526270697941
Merged-chr12-71016613-4	chr12	71016098	71017098	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	631.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	7.07238412251395	7.27816776283452	7.09221434766602	7.30557310564818	7.27941954293669	7.52622476309331	0.320269621112246	0.185293722518848	0.569470877644115
Merged-chr15-99121053-4	chr15	99120549	99121549	+	863.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-5796.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	4.50166988298577	4.08353822861875	4.25803306064712	3.69045601621786	3.3836686979232	3.85293162190997	-2.07652993996492	0.000290369076686144	0.00678299554545218
Merged-chr3-37421386-3	chr3	37420894	37421894	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021343, intron 1 of 15)	intron (NM_021343, intron 1 of 15)	1444.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	5.56366478193538	5.57269614740008	5.37161765460897	5.67629993702277	5.99647761816972	5.61839816763084	0.504701305490364	0.130471420394154	0.482676025154672
Merged-chr5-33628198-2	chr5	33627698	33628698	+	746.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359461)	promoter-TSS (NM_001359461)	-687.0	NM_001359461	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	4.47192773327671	4.77126688891222	4.75262803534751	4.30362558777406	4.71156496060641	4.62579731084385	-0.256144457486842	0.562118687555603	0.86560636450104
Merged-chr6-97456830-1	chr6	97456330	97457330	+	920.5	f0_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2456.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.45919565511564	8.58084873794322	8.09095425438503	8.25337984309135	8.52375109697222	8.04221232345365	-0.145318280043095	0.565746164710099	0.86688237163883
Merged-chr18-77775120-1	chr18	77774620	77775620	+	575.0	f0_c57.idr	intron (NM_007505, intron 1 of 11)	intron (NM_007505, intron 1 of 11)	-1235.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	4.96818193433246	5.39915693520155	4.82649409119151	5.09780415554737	5.03538341157998	4.93321758397143	-0.157886130145236	0.694288879972593	0.919210273513843
Merged-chr2-140783115-4	chr2	140782626	140783626	+	862.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	MLT1H|LTR|ERVL-MaLR	-111650.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.17426294574764	3.27753160023574	3.25487477999609	3.18621612946641	2.9494016296004	3.32601916818999	-0.342843941334313	0.600167936752938	0.881490627508743
Merged-chr4-126537008-4	chr4	126536495	126537495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3537.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	5.78882339174127	5.89281471309594	5.93214310171876	5.75504812184052	5.97626035135299	5.94662062746054	0.0503827939218454	0.867545487755561	0.969365699967298
Merged-chr5-125340923-6	chr5	125340356	125341356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001205082, exon 1 of 12)	exon (NM_001205082, exon 1 of 12)	238.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	7.56528099753854	7.57268176912136	7.74734322037146	7.72629941707242	7.77058872327824	7.64468858391419	0.132730393207352	0.547811166081148	0.859445606128575
Merged-chr2-22826432-4	chr2	22825917	22826917	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	52090.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.61637817541782	4.56131252823628	4.79990684091658	4.83021570540026	4.70158736867978	4.59034637291114	0.141677887828275	0.729863772207234	0.930635866770147
Merged-chr1-86417142-4	chr1	86416652	86417652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9177.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	7.44888328158379	7.45624771452043	7.43058976337749	7.40295488510491	7.57789307163301	7.30013946300287	-0.00871649792870415	0.969886556360676	0.993247105656042
Merged-chr12-32230779-4	chr12	32230278	32231278	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22129.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.70911046065032	4.60880511912418	4.39642112438836	4.29217411221514	4.1004204809791	4.4203595813688	-0.822264599591067	0.0697895476842098	0.345847445961977
Merged-chr5-97000736-2	chr5	97000236	97001236	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	Tigger17a|DNA|TcMar-Tigger	3047.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.55841710101915	4.46954572688309	4.86194655015131	4.73300112632681	4.83756043403661	4.89126324415267	0.449323660102194	0.276522532217905	0.673937109656642
Merged-chr10-96344152-2	chr10	96343652	96344652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	117945.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	2.92405660900537	2.63472568675025	3.03159489279567	2.98382735301899	3.19731120816216	3.16117693368625	1.16526208272098	0.111709219667086	0.446386243579641
Merged-chr3-8924908-4	chr3	8924409	8925409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	6.85283903306792	7.10023198680168	6.91581757891816	6.94717440254508	7.10936108409658	6.84153284773393	0.0228823908989318	0.928289866579802	0.983802612059568
Merged-chr6-122856152-4	chr6	122855651	122856651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	6.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	7.56934054897515	7.64526112228053	7.12814230753873	7.48305149157488	7.93681777898204	7.28850014042269	0.19584079176749	0.500781690344354	0.835242909787083
Merged-chr7-137409598-2	chr7	137409098	137410098	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	MLTR14|LTR|ERV1	1158.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	2.96603828896949	3.21377658719606	3.06318880342472	3.32597351348906	3.29226978419847	3.1970781051842	0.793301988084353	0.222901314818304	0.617776133760918
Merged-chr12-78868304-4	chr12	78867792	78868792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026114, intron 2 of 7)	RLTR35B_MM|LTR|ERVL	6220.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	5.48435641412122	5.61923060303635	5.6405461712375	5.63424489356562	5.6593037283562	6.11414152745269	0.418995598319457	0.213798514543896	0.606900020244801
Merged-chr19-38026468-1	chr19	38025968	38026968	+	606.0	f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	17109.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.3588844876403	6.1884178063746	6.21458753827112	5.63896969536431	5.84290837424792	5.99673212695661	-0.74077993846093	0.0134607737141372	0.123491460655759
Merged-chr7-83893793-3	chr7	83893289	83894289	+	656.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023403, intron 1 of 2)	intron (NM_023403, intron 1 of 2)	1789.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	3.12468167207115	3.0694450005821	2.96162391733271	2.9899991804802	2.95552741783682	3.20833519495676	-0.0325859513953759	0.961285809120005	0.990497927102774
Merged-chr1-166844201-2	chr1	166843701	166844701	+	778.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155529.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	2.58670668875858	2.41149496961851	2.4112944065892	2.74810967661906	2.94482246024657	2.75505681912217	2.02841970077506	0.015064383626117	1
Merged-chr11-97288961-3	chr11	97288487	97289487	+	685.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-8411.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	6.42205046405765	6.17007618914169	5.70133544602036	4.00789286555618	3.63643609011867	4.43317229892321	-5.47211259206884	2.31438684458759e-05	0.000827925625814463
Merged-chr19-46648123-4	chr19	46647635	46648635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24734.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	7.0228800964784	7.10201657033605	6.92865821862624	6.77453810983372	6.58662313092102	6.24879769467383	-0.712319243882623	0.00998336397788853	0.100210924566065
Merged-chr19-5989241-4	chr19	5988747	5989747	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007600, exon 22 of 22)	3' UTR (NM_007600, exon 22 of 22)	-3104.0	NM_198650	381203.0	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	3.61177907360257	3.37369485354737	3.41425139493359	3.58048704061828	3.460712016084	3.37020199334516	0.00844445427101692	0.988599530103288	0.997426973334006
Merged-chr3-31092069-2	chr3	31091569	31092569	+	727.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2989.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	2.96109119998051	3.06288905321954	2.91881733954936	3.09619358668856	3.19998143593351	3.23056941391391	0.84828598367533	0.200920520815631	0.590247860859073
Merged-chr7-31085306-3	chr7	31084805	31085805	+	867.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8608.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	3.94888265328746	4.15254493433246	3.76957553680397	3.39113331345153	3.16480245737579	3.51091566080498	-2.30960954858033	0.00020105142922283	0.00503888172372687
Merged-chr11-70466405-4	chr11	70465911	70466911	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6427.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	6.74293868659664	6.39112442866498	6.42846196383058	6.3235058684113	6.6962192992519	6.66124601728261	0.059897101131579	0.836044358881004	0.961926727606447
Merged-chr16-11004870-2	chr16	11004370	11005370	+	880.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-4028.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	5.18451613576173	4.90116670527015	5.39784490374144	4.87029460329499	4.54535849644501	5.23309766221355	-0.574276606221652	0.184415709736801	0.568117822131794
Merged-chr14-55784050-4	chr14	55783539	55784539	+	930.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361604)	promoter-TSS (NM_001361604)	33.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	7.08393626284861	7.31262780908013	7.16292181768112	7.22403467834384	7.75499193899711	6.93223160334026	0.257264640259147	0.389296773239589	0.769015431167891
Merged-chr3-105048582-2	chr3	105048082	105049082	+	744.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	4371.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	6.65982022588633	6.66837964884585	6.78215503994519	7.17832234604848	7.20074396152958	7.02645644695752	0.679785309924757	0.00533378132529137	0.063974857542656
Merged-chr4-128705557-2	chr4	128705057	128706057	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 2 of 14)	B4A|SINE|B4	16819.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.49828013910189	3.48490257700196	3.48211539820386	3.66419382122325	3.12002786426336	3.65865896536939	0.0478816009721012	0.939907221669764	0.986753310597155
Merged-chr2-143917806-4	chr2	143917294	143918294	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019771, intron 1 of 3)	intron (NM_019771, intron 1 of 3)	2463.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.66965335165091	3.24293474497242	3.43862205271118	3.33891948294553	2.81550854348807	3.22567624814784	-1.29017151029443	0.0758427843445072	0.362539808419832
Merged-chr6-72148751-2	chr6	72148251	72149251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	intron (NM_001035228, intron 5 of 6)	-25554.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.20031326052057	3.40668980496567	3.94899314122873	3.4302778940854	3.33221364058557	3.84161828087711	-0.0130849908476864	0.984443437337039	0.99660031309163
Merged-chr11-120576668-2	chr11	120576168	120577168	+	789.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133796)	TTS (NM_133796)	-3415.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	4.43178133021337	3.75012626283186	4.29227335009271	4.08114097683714	3.96371501064367	4.66642104052432	0.209557038436362	0.713792179116442	0.925599802465018
Merged-chr1-72105650-4	chr1	72105130	72106130	+	888.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100435.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	4.42290742280071	4.2385815650647	3.97703158508507	4.69994141928107	4.2918717322868	4.25676794218017	0.521209354790031	0.294608418605643	0.691483379744953
Merged-chr11-29809529-4	chr11	29809040	29810040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	16128.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	7.95088711456662	8.26639068734452	7.81530875851305	8.23981868708853	8.50633852875308	7.79161478899981	0.268976872735915	0.329862601798479	0.721504110160967
Merged-chr4-124700593-4	chr4	124700097	124701097	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010213)	promoter-TSS (NM_010213)	-102.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	5.09840572986241	5.08635674539228	5.44627742211906	4.81807212729537	4.88885696628406	4.79751733946911	-0.794554982829147	0.0395043595548841	0.24692598781872
Merged-chr16-20537563-5	chr16	20537146	20538146	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009679, exon 2 of 11)	5' UTR (NM_009679, exon 2 of 11)	2166.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	5.75533968965051	5.96452379995028	6.33873628756561	6.07320288667808	6.2675908749041	6.51768701599332	0.444251786081204	0.172897176144376	0.551631164432615
Merged-chr11-22923098-2	chr11	22922598	22923598	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361661, intron 2 of 2)	ORR1B2-int|LTR|ERVL-MaLR	-48907.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	2.28559542361352	2.4385240194421	2.46584991250082	2.19093052412232	2.11698349549647	2.41458516426674	-1.07513499648997	0.225242134516278	1
Merged-chr7-123025650-2	chr7	123025150	123026150	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	55086.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	3.54641448101601	3.58720848614128	3.35967696726254	3.89173531151291	3.74479078794184	3.66601478023161	0.908944345469766	0.111065890662983	0.445140919526297
Merged-chr11-3202477-4	chr11	3201965	3202965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166547)	promoter-TSS (NM_001166547)	112.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	7.25091135314421	7.55213718712299	7.58358911498631	7.61321745705613	7.46021429620294	7.3086620830922	0.00376788743130639	0.987763639156684	0.997233411338816
Merged-chr4-41358188-2	chr4	41357688	41358688	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	ID_B1|SINE|B4	6225.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.03269883803984	6.44112965925958	6.44893807648701	6.10217596489524	6.42878035556567	6.52525877438992	0.0723448988958053	0.813900496543187	0.955984497572397
Merged-chr15-103316624-4	chr15	103316118	103317118	+	852.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-6180.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	3.16976828627387	3.27055896413747	3.71933648098179	3.19593030564074	2.93040006427917	3.69599680795512	-0.344045820702628	0.636635562624496	0.89720767300409
Merged-chr8-26688414-2	chr8	26687914	26688914	+	559.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136009.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.68828537612898	6.13315530590274	5.80427306423538	6.30490698997978	6.66329175095882	6.30384810238024	0.920180425802269	0.0038290321679299	0.0503293108509303
Merged-chr5-123371779-2	chr5	123371279	123372279	+	795.916687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-23019.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	4.81883149529252	4.47979742121796	4.56211104696439	4.86279050570516	5.1243841804339	5.08410010152105	0.893348449560474	0.0288534399253373	0.203806199431873
Merged-chr2-167769175-2	chr2	167768675	167769675	+	935.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	77998.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.86514307560028	5.12336821519395	5.45182916525304	4.872064063619	5.14213868054519	5.2892435332808	-0.102656062455169	0.798585006693287	0.952024179691701
Merged-chr15-66813613-4	chr15	66813107	66814107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18222.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	7.56855604694251	7.6781352974592	7.48864540869164	7.29933817666297	7.45370306597133	7.62250104068417	-0.180212398396261	0.44162704358897	0.802789517411278
Merged-chr1-191326401-4	chr1	191325899	191326899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	CpG	434.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	7.76029659407918	7.7444377666198	7.76215268428713	7.87146738899772	7.99715890884789	7.79292948825174	0.199905404685088	0.353362908077031	0.740681126527216
Merged-chr6-48708260-4	chr6	48707778	48708778	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153175)	promoter-TSS (NM_153175)	-34.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	3.81369923796583	4.16991904763161	4.05826582111419	3.80238616235922	4.2296233331693	3.87836553878412	-0.0830184223351389	0.877111928513578	0.97149375595112
Merged-chr14-26502883-4	chr14	26502431	26503431	+	795.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	L1_Mur2|LINE|L1	31693.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	4.55593053334112	4.20480691406382	4.61438611755474	4.16352168076606	4.2610406975775	4.85426901321453	-0.0322212121635319	0.948815930739168	0.988169196639905
Merged-chr12-113013729-2	chr12	113013229	113014229	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	-779.0	NM_001291445	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	5.66576206351862	6.15496204019554	6.11369303506835	5.90127525399071	5.92700674162929	6.19409054249387	0.0223575656575692	0.945195047316644	0.987875414328125
Merged-chr11-76479888-4	chr11	76479388	76480388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	MER117|DNA|hAT-Charlie	-11423.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.21044066564938	8.18448206286591	7.8614430364588	7.83270196479117	8.19716269795856	7.73416680818233	-0.218671036448669	0.382558432448656	0.764107846408276
Merged-chr2-11553939-4	chr2	11553426	11554426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	3.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	8.13851801441763	8.43584813769491	8.04181774933993	7.97685956865367	8.19807347826269	7.78273570303856	-0.305802246369771	0.211054364391102	0.603443459289906
Merged-chr15-83009190-4	chr15	83008692	83009692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13946.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	7.15724610120839	6.97449501431291	7.16350817467058	7.16822765933124	6.9766078670946	7.03134040484782	-0.0578492012904092	0.812164172557777	0.9555115796421
Merged-chr9-121919150-4	chr9	121918648	121919648	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2843.0	NM_010012	13124.0	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	3.1024470824812	3.3700354347752	3.15288450632903	3.10109984092901	2.93940109894159	3.16680617242128	-0.656768888819866	0.322559042479023	0.715978413663286
Merged-chr6-83681774-4	chr6	83681283	83682283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-3926.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.22292231743472	4.32345980980434	4.46087299060937	4.13307266610043	4.34724040854117	4.4865858601404	-0.0191114757176725	0.96685031905722	0.992385080835768
Merged-chr1-51520480-4	chr1	51519968	51520968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-42069.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	6.08650839950776	6.22418622155765	6.45644428342884	6.45643477425538	6.4978972530618	6.6160915851738	0.437859583508663	0.117573820220429	0.457794860113807
Merged-chr4-126252738-3	chr4	126252223	126253223	+	774.599976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	3596.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	6.19237217661814	6.22459386415872	6.59799538564278	6.4312913934921	6.51604601173828	6.5073006181085	0.239446372422914	0.398206977202381	0.774929344051196
Merged-chr18-12936972-4	chr18	12936490	12937490	+	894.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	RMER6B|LTR|ERVK	4851.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.45280525801808	4.38276015760597	4.35837431314623	4.68072563491159	4.32639218174571	4.38147272725774	0.181186014589281	0.684524908364137	0.915930759709583
Merged-chr15-66807375-4	chr15	66806876	66807876	+	707.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029841, intron 1 of 7)	Tigger16a|DNA|TcMar-Tigger	24453.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.04964422364374	4.12990380656349	4.24554766392899	3.85271323697205	3.79477558074551	3.99669172638568	-0.79105627175993	0.112390023725883	0.447764911391086
Merged-chr11-46265578-4	chr11	46265068	46266068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252459, intron 13 of 30)	Lx8|LINE|L1	30011.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	6.69212830310505	7.10626780244645	6.41550430564469	6.48159620020526	6.71378742722804	6.77050386849946	-0.19128067877319	0.528844876884138	0.850585575598857
Merged-chr11-106741468-4	chr11	106740958	106741958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-9768.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	6.00506285709072	5.20578132588595	5.68591738831777	5.64434935625313	5.57176942518503	5.94060055795957	0.0827532522195283	0.828607502903671	0.959833682782168
Merged-chr1-54563761-1	chr1	54563261	54564261	+	874.3333130000001	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6077.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	7.17766878847687	7.37595951133141	7.28132280037457	7.08812167727046	7.12901526850653	6.88372754216681	-0.354359649866493	0.145230149186823	0.508320794747706
Merged-chr19-34382899-3	chr19	34382435	34383435	+	647.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92200.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	3.13329370909119	3.11559584042351	3.11162761691733	2.5424926041766	2.62331507115233	2.76195399219741	-2.74332090461683	0.000901349596461226	0.0166222289943142
Merged-chr7-80440957-3	chr7	80440421	80441421	+	844.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35485.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.93529624862646	4.14213537030332	4.20381815014217	3.4679967412801	3.48470383370823	3.75987313688729	-1.7557395260527	0.00165800995967294	0.026741557031298
Merged-chr10-118805685-2	chr10	118805185	118806185	+	652.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	63218.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.03674020773098	5.48414973370411	5.46190326856709	5.39542912807049	5.29636481649799	5.37007006240661	-0.656629445738927	0.0711509705146835	0.349843165934167
Merged-chr14-99044356-2	chr14	99043856	99044856	+	783.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175245, intron 1 of 2)	intron (NM_175245, intron 1 of 2)	1780.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	3.31201590211572	3.25803858179275	3.45639043984019	3.40782787546008	3.49888747239775	3.36143650262208	0.344271877455642	0.563842425368836	0.865992481769395
Merged-chr11-108343240-3	chr11	108342664	108343664	+	830.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 1 of 16)	CpG	724.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	3.68834986932806	3.64717873838234	3.60704740396099	3.76254586408326	3.78588609694549	3.83384550455672	0.477493966609758	0.369238536852747	0.753971880891394
Merged-chr10-21611221-4	chr10	21610725	21611725	+	911.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	18080.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.65646138338107	4.44847281845858	3.87541336924755	4.41913079681943	4.49299083979551	4.12042716833623	-0.0415946783592574	0.938800839009791	0.98654652268002
Merged-chr14-31250304-2	chr14	31249804	31250804	+	688.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027949, intron 1 of 10)	B1_Mus1|SINE|Alu	1011.0	NM_001360625	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	5.61033786039419	5.63664821517928	5.71531434161655	5.66531191772248	5.91410026073532	5.55624924933832	0.151397794608961	0.639306895144425	0.898021510164209
Merged-chr5-123018247-2	chr5	123017747	123018747	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	B1_Mur3|SINE|Alu	3173.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	3.3393684723066	3.33600442038633	3.70329191538476	3.0944145225783	3.28733533254655	3.52860260586737	-0.58959430590965	0.360376847231632	0.74661346773024
Merged-chr15-76780976-4	chr15	76780471	76781471	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	37199.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.48134786883523	5.60219838328446	5.52973804203434	4.89031378146312	4.61843532783762	5.17808365675071	-1.32772402401169	0.00049098513083714	0.0103584915737061
Merged-chr19-6361136-2	chr19	6360636	6361636	+	752.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2554.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	3.77405487417505	3.58404009298507	3.53392693347325	3.60052677419448	3.89054766728698	3.81894597493301	0.463191028900494	0.405800541939922	0.780439975167702
Merged-chr12-52308800-4	chr12	52308286	52309286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	171823.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.48945376881951	6.59584211954134	5.85267993389392	6.68754052832649	6.85594355767025	6.151012095053	0.391596593549281	0.27113970305754	0.66837483075135
Merged-chr18-3009206-1	chr18	3008706	3009706	+	809.799988	f1_balb.idr	Intergenic	RLTR30|LTR|ERV1	114206.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	3.69215978054676	4.65220953666458	4.41557093031705	3.35112929195089	3.22611069374231	4.94573619517041	-0.318525001038131	0.872942899860482	0.970349288189719
Merged-chr3-88425216-4	chr3	88424702	88425702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178696)	promoter-TSS (NM_178696)	-61.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	6.82104656447418	6.68048289522596	6.23012416522627	6.98112056337119	6.9420529993382	6.61153929026161	0.387130098717477	0.193618255878466	0.580875710659291
Merged-chr11-31868948-4	chr11	31868474	31869474	+	874.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1966.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.79464214339315	3.58848801916839	3.57367198150452	4.41238052036918	4.15011207492558	4.03431439441647	1.69655306185487	0.00172534256320373	0.0275922167978197
Merged-chr3-84826665-1	chr3	84826165	84827165	+	603.0	f1_c57bl6.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	11088.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.42804995231488	3.70610836158916	3.93721560205081	3.66969542452748	3.53284224382744	3.55926782875196	-0.382871143794448	0.510436430866091	0.840886591313675
Merged-chr15-101113383-4	chr15	101112897	101113897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2358.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	6.83279871401968	6.74917909709942	6.75928154939376	6.80318516411846	6.98371989678242	6.54812235856936	0.0338704347627215	0.898703352677577	0.976432549466174
Merged-chr1-180569337-2	chr1	180568837	180569837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007415, intron 1 of 22)	CpG	446.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	4.97215882106106	5.01886888037018	4.98072910998352	4.55655648237035	4.96922035309013	4.7046389413098	-0.496572444283712	0.219910917520371	0.61423936831415
Merged-chr18-32377177-4	chr18	32376677	32377677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-40.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	6.87654830962292	6.79562114032447	6.94890486413837	7.11438481951027	7.35625185716552	7.21120744629282	0.552756374222742	0.0231394305150959	0.177864732960748
Merged-chr11-51688722-4	chr11	51688215	51689215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-81.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	8.26305579871854	8.49832697241352	8.10772201100699	8.25969332540364	8.38772137228501	7.93525672453391	-0.125371873024643	0.606365144548453	0.884048762047724
Merged-chr7-83597058-4	chr7	83596553	83597553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177695, intron 4 of 22)	intron (NM_177695, intron 4 of 22)	12122.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.45073110075795	3.33331490967256	3.51248794613554	3.80287492560067	3.92965842361262	4.03559575005586	1.72221581364757	0.00225538146931927	0.0338563559983976
Merged-chr19-38836550-4	chr19	38836067	38837067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362424)	promoter-TSS (NM_001362424)	-12.0	NM_145952	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	6.2217170170733	6.10561919400497	6.07152594395674	5.99692692572292	5.62419948686887	6.21503960091889	-0.316286723712351	0.324926695259355	0.71780685615767
Merged-chr10-95236560-4	chr10	95236085	95237085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	87124.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.44040215718397	6.24163236531536	6.24417233193295	6.14701171110013	6.0358162102041	6.06809352577918	-0.390518305727529	0.16639495726876	0.541648772157832
Merged-chr2-166726269-2	chr2	166725769	166726769	+	732.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12437.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	2.36068511561739	2.40813677536924	2.66825488672682	2.63331535064634	2.57091409995661	2.68079029338702	0.871155112098866	0.276050359790239	1
Merged-chr15-64089407-4	chr15	64088877	64089877	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28929.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.69287895452436	6.67832303269939	6.87673617533264	6.36201987390724	6.59575654072981	6.43927132752672	-0.431093874153868	0.105493531871572	0.433519646383333
Merged-chr10-88799484-4	chr10	88798992	88799992	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 19 of 61)	MTD|LTR|ERVL-MaLR	27322.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	4.41797151736609	4.50356411344382	4.80825448528704	4.08188086881205	4.06681792496013	4.34061993950032	-1.10550780740242	0.0184138686948487	0.153043831734001
Merged-chr19-30030437-4	chr19	30029929	30030929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144873)	promoter-TSS (NM_144873)	-84.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	7.5648749123485	7.69882710287943	7.84628937002305	7.57239127043417	7.52236891216883	7.74006743011496	-0.13614815343345	0.553788799047808	0.862511153788863
Merged-chr2-173000089-4	chr2	172999594	173000594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175112)	promoter-TSS (NM_175112)	-23.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	7.77911877321108	7.8934701914129	7.34855911954025	7.4368581160272	7.51949613542343	7.27552706474842	-0.413328222622501	0.108578576709277	0.440273571814211
Merged-chr18-46281457-2	chr18	46280957	46281957	+	586.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172627)	promoter-TSS (NM_172627)	-607.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	5.60836033612498	5.97039792325852	5.78692855695678	6.26529589298369	6.31421891048492	6.37262617276595	0.884771935496413	0.00323024017192411	0.0446157362605571
Merged-chr9-99560542-2	chr9	99560042	99561042	+	952.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 1 of 21)	B1F2|SINE|Alu	8357.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	3.24226828578651	3.60016319982034	3.2595903259691	4.16301815242674	4.18017280097893	3.71202397573385	2.2337192361003	0.00062338449433934	0.0124899053708133
Merged-chr9-43239803-5	chr9	43239310	43240310	+	887.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178644)	promoter-TSS (NM_178644)	6.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	4.24297359462373	3.93518850902015	4.09536895376365	3.62132953185737	3.3783209555757	3.48765486445939	-2.05958824678091	0.000341257190700571	0.0077498166822634
Merged-chr18-46964103-2	chr18	46963603	46964603	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 3 of 6)	intron (NM_178377, intron 3 of 6)	5227.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	4.07192747952991	4.64839906643918	4.36065983353822	4.352416270814	4.38440063055171	4.38435860042911	-0.0359035227327222	0.940083586890171	0.986782000249854
Merged-chr17-83528303-2	chr17	83527803	83528803	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER3|DNA|hAT-Charlie	-13970.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	4.46126491868458	4.49537744607813	4.82595632781507	4.74975056449366	4.60954760919104	4.855126967625	0.337491255371416	0.424816854577744	0.792848465017231
Merged-chr9-21714523-1	chr9	21714023	21715023	+	561.0	f1_balb.idr	Intergenic	Intergenic	-9053.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	3.29746690341789	3.53491986506602	3.81662532790618	4.12348935209083	3.91750804237489	4.48334922928074	2.01557353794622	0.000781183213451981	0.0149101013018134
Merged-chr2-181237124-4	chr2	181236623	181237623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 6 of 18)	AT_rich|Low_complexity|Low_complexity	4904.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	3.35034685571897	3.09093372231793	3.68095487980019	3.73881855310182	3.46070233445407	3.89206420762154	1.12522333165642	0.0823098585818112	0.379332363801987
Merged-chr17-28737475-2	chr17	28736975	28737975	+	750.474976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31842.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	5.56467748808698	5.48546711448018	5.83375090224985	5.61253837219929	5.75552223892755	6.08985065040701	0.3635510556973	0.282095978458342	0.679972253057987
Merged-chr10-7956302-4	chr10	7955808	7956808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138667)	promoter-TSS (NM_138667)	-185.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	8.07939807896953	7.58576051090755	7.79561783761	8.3037895614821	7.20900550942127	7.80193425931317	0.0215707577131391	0.947841012460691	0.988008807662239
Merged-chr5-99336606-4	chr5	99336082	99337082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83655.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.16868356230871	8.13410815845838	7.6935322394409	8.03158524250862	8.28606621151416	7.65307437320067	0.00339677091967002	0.990076534921187	0.997703818943275
Merged-chr7-49002444-2	chr7	49001944	49002944	+	677.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	43371.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.72748616856818	3.53847655171657	3.54028545181111	3.62849941041902	3.5936580665467	3.76793062385565	0.181014085867424	0.744636119570863	0.936032341688524
Merged-chr11-8565759-1	chr11	8565259	8566259	+	615.0	f1_balb.idr	intron (NM_001083587, intron 4 of 30)	B4|SINE|B4	98776.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.68581145626539	4.55537446050266	4.3962441756129	4.79783367150706	4.82790684690755	4.98222438513109	0.714093951959542	0.0836481117140003	0.382743584245177
Merged-chr18-67258514-4	chr18	67258015	67259015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-12685.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	5.14802096829929	4.99622015212792	5.02021965224553	5.45492249643797	5.49378624048304	5.35545851727337	0.770122670549919	0.0270842722025276	0.195979372460218
Merged-chr9-94696856-4	chr9	94696361	94697361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	26969.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	6.95484677522349	6.93456344469433	6.82441152789176	6.76055080394519	6.96044643160396	6.79139422161133	-0.0978207579059134	0.694925120358564	0.919230570201314
Merged-chr3-136310992-1	chr3	136310492	136311492	+	777.0	f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	15074.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.32476410851166	3.6067832885911	3.48811852270957	3.48918392194982	3.23762358548454	3.80874320092523	0.166041541533117	0.79094222055137	0.949685728440242
Merged-chr3-31216112-4	chr3	31215570	31216570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172861, intron 7 of 7)	L1MA4|LINE|L1	66150.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	3.42299537604083	3.4283210099757	3.49963588179067	3.1420541184364	3.23806751321315	3.11513536631449	-1.1318666181218	0.0717144289513938	0.351384654586479
Merged-chr4-12521441-2	chr4	12520941	12521941	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-349426.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	2.90434293403729	2.70587138269776	2.90826539570526	2.72961170186443	2.93612976025731	2.86051107841515	0.0340492768341798	0.962307389305884	0.990814379307595
Merged-chr9-119444901-4	chr9	119444344	119445344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172456)	promoter-TSS (NM_172456)	-116.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	4.82055129122609	4.85365035761799	5.17352841428393	4.81940206694269	4.84092395864139	5.0460257405454	-0.106626996415121	0.786468580298154	0.9485089448125
Merged-chr9-21237257-4	chr9	21236750	21237750	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	2082.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	8.16458080607443	8.22578058128968	7.90164975470669	8.1388709780136	8.35174193656137	7.84890632625824	0.0393510679590446	0.872530790157262	0.970261003150518
Merged-chr13-93354549-2	chr13	93354049	93355049	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 4 of 9)	B3A|SINE|B2	46515.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	3.48026802953336	3.49125447208543	3.56894921746977	3.46488568251494	3.16298408745465	3.58722628830193	-0.389520446859927	0.522508535330887	0.847644119032093
Merged-chr6-125510759-1	chr6	125510259	125511259	+	631.0	f1_c57bl6.idr	Intergenic	Intergenic	-15999.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.03867547064899	2.27204668974155	2.15186585294144	2.43180444493563	2.25550108864683	2.42796199024475	1.47867942179507	0.106682542231706	1
Merged-chr7-27474704-4	chr7	27474210	27475210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133210, intron 1 of 1)	intron (NM_133210, intron 1 of 1)	870.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	6.06803723691613	6.02118279490565	6.57233709008979	6.48145075820251	6.65612087333559	6.75353674482585	0.65465205388961	0.0310910089240233	0.213471634535112
Merged-chr11-74524373-4	chr11	74523868	74524868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	65790.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.4758458352561	4.13177755445079	4.22740492910464	4.25706417883237	4.03335970827023	3.89307898119099	-0.598502538550012	0.229976927428172	0.625733149436498
Merged-chr5-130222956-2	chr5	130222467	130223467	+	814.0	f0_balb.idr|f0_c57.idr	intron (NM_027854, intron 1 of 6)	B3A|SINE|B2	632.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	7.80937458316436	7.7520286225603	7.46233552769377	7.62629522771305	7.66876784913668	7.22876823024448	-0.228484098915736	0.369859515887711	0.754352114878
Merged-chr2-157129987-4	chr2	157129461	157130461	+	882.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	5261.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	7.08538553745823	7.34869166120301	6.85169931614881	7.02966391232999	7.42416994790455	6.87945840433291	0.0360309138750924	0.900846674887072	0.977003338338462
Merged-chr13-13557571-2	chr13	13557071	13558071	+	999.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-32838.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	2.57428870545243	2.53188966158449	2.32302822665231	2.53258747810352	2.45402799742874	2.84289324855525	0.762334474939532	0.367565481881037	1
Merged-chr6-86556865-4	chr6	86556349	86557349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	B1F1|SINE|Alu	29448.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	4.97703393973689	5.07170720649862	5.02820845852688	5.18508093899305	5.48568649885536	5.0205827654609	0.483005352779207	0.199216610829809	0.587623906831272
Merged-chr4-94603955-1	chr4	94603455	94604455	+	675.0	f1_c57bl6.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	-708.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	5.65828963482361	6.24977626027019	6.08586221252221	6.19956197530738	6.32041053748314	5.91174870410287	0.240766836326636	0.470742138750728	0.819668777725545
Merged-chr11-115161168-3	chr11	115160697	115161697	+	936.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-2144.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	6.27842176538001	6.09641828539654	6.16854982570035	6.37522254873535	6.75482274358261	6.4666262102514	0.60250340897601	0.0353056268566754	0.230667337770908
Merged-chr16-64884670-3	chr16	64884158	64885158	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	32657.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.4871123747432	3.6457254754171	3.84079850030253	3.50230674500403	3.51472455553767	4.12675569645048	0.259612308985191	0.669315280546431	0.909615408611738
Merged-chr8-13106122-1	chr8	13105622	13106622	+	1000.0	f0_balb.idr	promoter-TSS (NM_178708)	promoter-TSS (NM_178708)	401.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	6.73468664467343	6.97272560721023	6.93612685589863	6.90268307181995	6.6083763421021	6.42219299162864	-0.340531473457612	0.218625379965284	0.612741862631882
Merged-chr2-168570155-3	chr2	168569665	168570665	+	879.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291173, intron 1 of 8)	intron (NM_001291173, intron 1 of 8)	20200.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	2.95534507844159	3.4394200688677	3.33634607689658	3.01689498259778	2.69930313475965	2.74011535855395	-2.08104124968697	0.00821927106335628	0.0877368962975946
Merged-chr3-36475827-4	chr3	36475334	36476334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	53.0	NM_009673	11747.0	Mm.1620	NM_009673	ENSMUSG00000027712	Anxa5	Anx5|R74653	annexin A5	protein-coding	7.79756415654499	7.92409307232525	7.75030534932437	7.58452487181515	7.88902949951288	7.92048013694767	-0.0320969054971309	0.889296066125612	0.974217570526342
Merged-chr12-24710824-3	chr12	24710260	24711260	+	855.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_009104, intron 5 of 9)	B3|SINE|B2	2506.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	5.28503395865416	5.44572679593299	5.1301521229949	5.31057826538228	5.5368153548748	5.54028113156527	0.319517925689598	0.360481914500131	0.746683637306224
Merged-chr1-33907614-4	chr1	33907108	33908108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	13.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	6.54061132313189	6.41810102636282	6.36970299612106	6.52064284116632	6.46489412123109	6.35128405180301	0.0045596020575899	0.986394832523664	0.997033990984076
Merged-chr18-54983285-4	chr18	54982789	54983789	+	867.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	6891.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.84422382480846	4.10370016036189	3.85815334447865	3.78947973313666	3.87675139458155	4.02556431563553	-0.15301474716784	0.76742104223326	0.942617496111852
Merged-chr7-28809618-4	chr7	28809139	28810139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1251.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	8.89355247875673	9.22476666968042	8.76286581149871	8.86797064002665	9.30955168670921	8.91529703650804	0.0976792008993274	0.68976415167658	0.917488557497671
Merged-chr13-113870556-4	chr13	113870052	113871052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76044.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	6.24511179578064	6.72781241496749	6.34321178348398	6.40207082644843	6.21905894725325	6.08278398787653	-0.35727613815854	0.240697535253337	0.637751895088513
Merged-chr6-72355284-6	chr6	72354827	72355827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144916)	promoter-TSS (NM_144916)	-156.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	4.94589389854447	4.64696828850681	4.45783863756325	4.92586419705277	4.38095012505773	4.57174522076104	-0.144043098003367	0.754396874205259	0.938883231757923
Merged-chr16-91726435-4	chr16	91726002	91727002	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	2300.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	6.40098870115445	6.52207950488405	6.37846399539495	6.32007003001377	6.85271638964314	6.31902194572351	0.161858272935875	0.592773215436956	0.878251343638437
Merged-chr9-21361297-2	chr9	21360797	21361797	+	908.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6574.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	3.51602686811432	3.39906202822094	3.86686416101514	4.07519096906094	3.80814296578914	3.68031936025467	0.887146053134086	0.126627307795069	0.475555381251673
Merged-chr4-46371245-2	chr4	46370745	46371745	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18178.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	2.3873292503314	2.38676600172951	2.30911268594314	2.49347732823982	2.42805389896135	2.64122250870613	0.969755388917527	0.236294482524213	1
Merged-chr1-128713052-4	chr1	128712552	128713552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120753.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.03310492299036	6.8214585816046	6.92685167963354	6.01235781193092	5.91307658207289	6.08692249562371	-1.51657599157382	2.04684728071849e-08	1.73083402981732e-06
Merged-chr13-104818438-2	chr13	104817938	104818938	+	854.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026075, intron 1 of 4)	intron (NM_026075, intron 1 of 4)	1268.0	NR_135272	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	3.04948332639825	3.02808652647914	3.1521428723425	3.24242097052392	3.01676685592203	2.92046915343179	-0.0245234265994472	0.970921585787576	0.993599367110128
Merged-chr15-82899776-4	chr15	82899280	82900280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045068, intron 1 of 3)	CpG	700.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	6.54013330418987	6.39704760064497	6.53721708317917	6.69532070698538	6.14128196935126	6.45525174131402	-0.073396439481765	0.804036998375924	0.953557286986578
Merged-chr12-3658149-3	chr12	3657687	3658687	+	946.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	L2|LINE|L2	85203.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	3.59256626837978	3.47644892803978	3.28126110433027	3.40155637024147	3.07911648559622	3.41186900000975	-0.6241255783024	0.327070990631354	0.719317370353337
Merged-chr11-69517926-2	chr11	69517426	69518426	+	576.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 8 of 85)	intron (NM_001081330, intron 8 of 85)	31182.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	2.61123950302305	2.53964864185866	2.67177810819295	2.60515783608852	2.5525126690583	2.80370634239274	0.262744862582248	0.729749215992394	1
Merged-chr1-149955676-4	chr1	149955173	149956173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	5617.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.72884127580811	6.11642376347506	5.74395800110206	5.81410155369709	6.0507373535798	5.95587296514656	0.109580816518561	0.732225624275465	0.931723932448277
Merged-chr17-49016373-4	chr17	49015880	49016880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	83798.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	4.03045724536035	3.91012585802356	3.6119470686819	4.00591174739482	3.83706281676121	3.90410628819948	0.136317140180684	0.799478336685358	0.952248176414355
Merged-chr3-105043922-4	chr3	105043360	105044360	+	699.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	9093.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.47874534396488	5.42768956959861	5.45822568353891	5.91013965340217	5.78680218904403	5.63796703536112	0.619406533062879	0.052257929006173	0.292222967523229
Merged-chr12-13242721-3	chr12	13242216	13243216	+	792.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134040, intron 5 of 25)	intron (NM_134040, intron 5 of 25)	6458.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	3.36969001769931	3.2837061233282	3.25723890106228	3.33959470278089	3.26292510800801	3.54713470675564	0.294250111729463	0.629532869435949	0.894317799828319
Merged-chr2-167662601-3	chr2	167662067	167663067	+	912.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	6.2013024998481	6.35714879980219	6.00050719947208	5.97799465207657	6.03515395773336	5.60334042974155	-0.51950886003571	0.102561703840429	0.427103460945617
Merged-chr12-103347615-4	chr12	103347119	103348119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8382.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	7.04418186004473	6.9096589895256	6.41085523317769	6.89282907237306	6.87050229828881	6.56787930082986	-0.0563613039155836	0.849230416734679	0.964611884188925
Merged-chr18-62169528-4	chr18	62169040	62170040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10441.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	6.23927706375162	6.38636533022656	6.30761880611391	6.27394807634719	6.10802077127469	6.20635745707991	-0.198947375868063	0.473023532563668	0.820601745007875
Merged-chr2-71274417-4	chr2	71273940	71274940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	62494.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	7.53756518166346	7.5793577044304	7.49239283155112	7.52023124519179	7.80245793247835	7.24603709941998	0.0244085209585646	0.923196208007251	0.982693984177635
Merged-chr10-21961134-4	chr10	21960619	21961619	+	941.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-17553.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.5954444216435	4.24895692560368	4.73417094111506	4.11166193264547	3.86835064143067	4.24655984638237	-1.24696029150607	0.0117833243287483	0.112762144996721
Merged-chr11-69847343-2	chr11	69846843	69847843	+	677.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_023564, exon 3 of 8)	exon (NM_023564, exon 3 of 8)	699.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	4.50508645901547	4.91636274925076	4.802021859065	4.41723873653417	4.53027550685434	4.59794926444191	-0.568778774295084	0.185765526866253	0.570056884374864
Merged-chr5-123907793-2	chr5	123907258	123908258	+	891.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 1 of 7)	intron (NM_026603, intron 1 of 7)	483.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	7.09059536767919	7.15335918601992	7.02457804580764	7.28360093235254	7.0761897245377	6.80361604347427	-0.0248062369861773	0.923467215314327	0.982699256056545
Merged-chr5-17820655-1	chr5	17820155	17821155	+	906.0	f0_balb.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	15241.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	4.33093655431061	4.35538700644519	4.31107666526172	4.30600671405389	4.31061100232619	4.14404941376916	-0.191912843274204	0.670944501183949	0.910258288590475
Merged-chr6-125042180-4	chr6	125041689	125042689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	2341.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	6.74736916615051	6.79797990065586	6.63433699433825	6.9670199593482	7.07750604011317	7.02283248324532	0.448801540737631	0.0679570601707319	0.341150592017271
Merged-chr14-16363947-2	chr14	16363447	16364447	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1259.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	5.16235817917812	5.30631447817492	5.06606912422718	4.50402340154852	5.06990013160423	4.62150136752308	-0.887082829783488	0.0387864438269768	0.244240855862987
Merged-chr15-101240939-4	chr15	101240459	101241459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15773.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	3.83800628335921	3.65116676754899	3.6399735760024	3.81006367294299	3.50236718487495	3.7109109733812	-0.13423364360792	0.809444783438561	0.954749848816598
Merged-chr5-114596817-4	chr5	114596270	114597270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28519.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	4.89022370327704	4.97765425338676	4.90847145399115	4.72943034611572	4.52241294534929	5.13863008906052	-0.268400315626876	0.523420141664272	0.84820746264669
Merged-chr17-86970516-2	chr17	86970016	86971016	+	959.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	7405.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	4.56769409021336	4.49657807118388	4.6383098233685	4.61932070744319	4.75745892445321	4.92439063471216	0.480987455936364	0.241740956642158	0.638803036215977
Merged-chr5-43737176-3	chr5	43736683	43737683	+	912.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 35 of 37)	intron (NM_001359906, intron 35 of 37)	44966.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.09171196728788	5.09782035923007	5.13859269352383	3.87736609461071	3.72212809147415	4.03618676848828	-3.50940942433881	1.00204565239178e-11	1.60651665981146e-09
Merged-chr5-110106974-2	chr5	110106474	110107474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145147, intron 2 of 9)	intron (NM_145147, intron 2 of 9)	1223.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	4.09156624082207	3.88646432885299	3.87941409371553	3.98470230860787	3.98412698539292	3.84497574864115	-0.0481784526958434	0.924272937642949	0.982923745196305
Merged-chr16-24913655-2	chr16	24913155	24914155	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-145984.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.59119666992861	3.63456972762493	3.50010912811752	3.38096339151057	3.42444857204708	3.51618289711737	-0.522944016173804	0.361843041797296	0.747492137884988
Merged-chr19-4031120-2	chr19	4030620	4031620	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	6792.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	3.40372844276926	3.41244356215449	3.30435534037882	4.02842523559949	3.8983484049336	3.88507268059836	1.97377768279354	0.000673072514142073	0.0132933818553842
Merged-chr8-70775884-5	chr8	70775463	70776463	+	790.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029440)	promoter-TSS (NR_029440)	749.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	6.01056443174624	5.87478520497822	5.79692988274973	5.95330111159163	5.87628645158764	5.90869689983233	0.0161263992015947	0.956881472729745	0.989887454023164
Merged-chr6-87743475-4	chr6	87742956	87743956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12587.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	5.90201169958727	5.37154239806489	4.681935873664	5.39218965556938	5.36984013657165	4.84777114722048	-0.362166310387742	0.657430779167702	0.904798742244684
Merged-chr13-73467983-3	chr13	73467469	73468469	+	954.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	586.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	4.62922861357499	4.30938480660867	4.01522518499585	4.64286917944674	4.47172734134937	4.14285783090211	0.226635002557448	0.657434353972161	0.904798742244684
Merged-chr1-59763390-7	chr1	59762861	59763861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-918.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	7.39557708589941	7.47551507379325	7.43543181800604	7.20890337149727	7.22414086859978	7.25138812761407	-0.310145787505658	0.168607184758108	0.545219112423771
Merged-chr15-97581899-4	chr15	97581392	97582392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	123930.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.78631571481429	5.84076892449232	5.4288313131273	5.51802410753747	5.67709578913047	5.10562467574077	-0.438605559182279	0.234958178760973	0.631024470284135
Merged-chr18-5832793-4	chr18	5832319	5833319	+	774.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240172.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	2.97817386592035	3.26178326858852	3.56777651765394	3.19385073492614	3.00780350625988	3.2205933006586	-0.597867533444378	0.382371323531922	0.763956450562662
Merged-chr11-74532557-3	chr11	74532057	74533057	+	902.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	57601.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	3.20947260796063	3.41311009947758	3.53566789802494	3.4338657955669	3.46580692375943	3.44592009810132	0.234588856852824	0.694858992710351	0.919217788511748
Merged-chr1-135680907-4	chr1	135680401	135681401	+	896.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39162.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.42070515759801	3.52994757958815	3.7276494820284	3.26319608292908	3.09911190221288	3.44391523731668	-1.14576473796984	0.0674436633300921	0.33963882699088
Merged-chr12-75819315-3	chr12	75818806	75819806	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	988.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	3.70063179137787	3.89950805148605	3.56418496365751	3.8533850478678	3.50776506723346	3.46025494196509	-0.381472689712574	0.515102341948893	0.84337265078831
Merged-chr4-115640777-4	chr4	115640288	115641288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007823, intron 3 of 11)	intron (NM_007823, intron 3 of 11)	6917.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	5.23686981450856	5.48242425885267	5.4947211458808	5.88982460776998	6.31322392527723	5.72968545250175	1.10961354853428	0.00137512954483174	0.023143563747241
Merged-chr7-83879535-4	chr7	83879028	83880028	+	975.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030705)	TTS (NM_030705)	4813.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.77635862235878	5.91384734268986	5.85573473537133	6.39258126915025	6.49188470450872	6.429611668897	0.9992179199626	0.000384672771942287	0.00853770392311919
Merged-chr14-70798776-4	chr14	70798279	70799279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	24398.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	5.42656270744185	5.42562023458197	5.76141560557931	5.46611725707844	5.62334973495281	5.47736588356572	-0.0107562199390698	0.974566568673476	0.994296985713596
Merged-chr2-166711832-4	chr2	166711341	166712341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1991.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	8.4905391230754	8.28522154623306	8.32798921132778	8.48485020550618	8.7565780079036	8.29016232390992	0.222172712180038	0.334846606886995	0.725198429760335
Merged-chr7-73541700-4	chr7	73541194	73542194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081345)	promoter-TSS (NM_001081345)	52.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.10250713965612	8.11935227582397	7.47748786488351	7.34421751966641	7.99638187792747	7.7851773954487	0.135080041278959	0.689841757547435	0.917495512399022
Merged-chr3-89899738-2	chr3	89899238	89900238	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	Lx7|LINE|L1	13458.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	2.72421515371532	2.71354090687505	2.85736299954635	2.67166643860996	2.53648100280662	3.15155777346968	0.224337135794633	0.77582544096872	0.944804182096302
Merged-chr7-99976537-4	chr7	99976044	99977044	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	3914.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	5.06875726593504	4.7764593408101	4.76412773544092	4.7534655620394	4.76704053089345	4.71013950641321	-0.311237017011315	0.436421314914425	0.799479240757292
Merged-chr5-140507143-2	chr5	140506643	140507643	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	1534.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	3.01595730333168	2.8495131353641	3.05287821158903	3.11038404646214	2.90132530732192	2.75035601061375	-0.195509958685236	0.785082065732001	0.947850129107983
Merged-chr1-174042717-4	chr1	174042207	174043207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	774.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	5.38656151215298	5.05239161956634	5.27577337841101	5.51413805074654	5.50771630094992	5.24120306065667	0.377307455661034	0.289722483963348	0.687430963346381
Merged-chr12-76541002-2	chr12	76540502	76541502	+	629.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6923.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.71314621210244	3.78884226738245	3.466314809405	3.78488602680205	3.37702727980183	3.53939164916161	-0.320297444019887	0.589271694529693	0.876779541179768
Merged-chr19-43921580-3	chr19	43921082	43922082	+	901.922241	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	18616.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	4.05198926545711	4.15592307033275	3.76436021673096	3.49035335794699	3.53902388577048	3.728406737976	-1.41035640081289	0.0114157992441274	0.110424201741438
Merged-chr9-89461317-2	chr9	89460817	89461817	+	690.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161669.0	NM_153509	209743.0	Mm.242899	NM_153509	ENSMUSG00000039313	AF529169	DD1|Kiaa1024	cDNA sequence AF529169	protein-coding	2.39960899398935	2.26078857865091	2.21002515889685	2.42369587238889	2.50733046613431	2.67543993905915	1.54116745217889	0.0771497612180161	1
Merged-chr4-155812384-4	chr4	155811880	155812880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207678)	promoter-TSS (NM_207678)	-109.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	8.11028788865596	8.3981450346606	8.04350719789574	8.06435232945593	8.36511490308808	8.18318054317762	0.0215234972529079	0.926048970036183	0.983305773102619
Merged-chr11-103175219-4	chr11	103174709	103175709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	4071.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	4.95017381439034	4.90940244434954	5.47191781958372	4.89802398169285	4.66138510210924	4.96950164894681	-0.610453401028068	0.142779249711496	0.504410300598401
Merged-chr17-8311037-4	chr17	8310516	8311516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134114)	promoter-TSS (NM_134114)	-72.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	7.92653443394018	8.43953958697992	8.30217211930455	7.95295827840246	8.39226843203427	8.02589185669877	-0.136477913890446	0.598133330798495	0.880655214435438
Merged-chr12-85398234-2	chr12	85397734	85398734	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23517.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	3.51458500077394	3.4002066153575	3.4688947308215	3.29091497056965	3.18402062587271	3.13503175289661	-1.02883623030511	0.0965080007445273	0.414164615294787
Merged-chr5-130079402-4	chr5	130078879	130079879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130476)	promoter-TSS (NM_001130476)	9.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	6.1387738860016	5.90089040879377	6.03611522041317	6.35498838881001	6.07249785391881	6.141266822441	0.282128289276503	0.339668297155553	0.729350397606009
Merged-chr8-70549908-3	chr8	70549407	70550407	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	10232.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.62786787176251	5.53229275947005	5.3252043819648	4.24272344907918	3.84855406432765	4.30219271441659	-3.4660222232552	2.5845568940177e-13	5.47215801621947e-11
Merged-chr12-85523300-4	chr12	85522791	85523791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49401.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.3487785446258	8.31626818493953	8.03713389485196	7.91283670995234	8.00959322609625	7.99654449535759	-0.385796012222605	0.0779974984935915	0.368771853778895
Merged-chr19-34525891-2	chr19	34525391	34526391	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1583.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	7.83169926280208	7.99806491319124	7.39969435169458	8.07304113964636	8.25968655335571	7.79857278848941	0.40869763712209	0.12775511965651	0.477901296748842
Merged-chr5-90415207-3	chr5	90414729	90415729	+	820.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45641.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	3.96682334884475	4.11195120119557	3.58856930318265	3.98429645714628	3.73832274386894	3.72067536432232	-0.296881722759051	0.597936657049003	0.880492573527298
Merged-chr4-137817865-1	chr4	137817365	137818365	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-21481.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	3.32095738783146	3.20827373938652	2.9239916195452	3.03477134707106	3.11390348220029	3.40880875798096	0.105505977363711	0.879201566561286	0.972083703102674
Merged-chr1-156474275-4	chr1	156473767	156474767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009230)	promoter-TSS (NM_009230)	61.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.39183958068441	7.36970949876498	7.13978337178717	7.34555352453339	7.47452614237072	7.19747321344534	0.0582819553926383	0.809581475019362	0.954749848816598
Merged-chr2-18063876-4	chr2	18063419	18064419	+	991.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	-666.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	7.99444980348323	8.09089966863631	7.48032041389181	7.8260933175544	8.04677910064315	7.94773877590492	0.0754757095506007	0.769350353733448	0.94311644544783
Merged-chr4-134765681-2	chr4	134765181	134766181	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	2323.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	5.18394024060613	5.30895312389281	5.64520576914368	5.48577374174918	5.67153635762058	5.6553623681154	0.434441778935038	0.210476049397144	0.602621125710907
Merged-chr9-62998806-4	chr9	62998308	62999308	+	857.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-17929.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.86368091723161	5.09374161827777	5.2527663994141	4.75475406719648	4.78575114684192	5.31518759706757	-0.231849739833538	0.577239343275234	0.87205828500771
Merged-chr9-118612393-4	chr9	118611936	118612936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	5727.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.75360315677784	7.96574196132848	7.85723687488845	7.50092510309278	8.02829052671331	7.48129430843131	-0.221885065830975	0.397288819914221	0.774186958204669
Merged-chr1-171688603-2	chr1	171688103	171689103	+	919.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	MER20|DNA|hAT-Charlie	6611.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	4.21457707186363	4.17916740450833	4.35298404575883	4.3145899634582	4.37791974825782	4.69377187476606	0.57109492592636	0.211566624523891	0.603945120913907
Merged-chr11-70595123-2	chr11	70594623	70595623	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20771.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	7.59634355387213	7.39219765514664	7.4703977214789	7.22970516675721	7.64091402838986	7.45555712409803	-0.0460374439645617	0.851443439391861	0.965220310573141
Merged-chr13-41469725-4	chr13	41469224	41470224	+	981.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	17636.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.85217856741847	4.99655228245339	4.59468804622385	4.6280826838918	4.49026456197647	4.82127620980456	-0.445678376217875	0.290105400305713	0.687733205116261
Merged-chr2-116922794-4	chr2	116922288	116923288	+	954.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22636.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.39489899064638	4.10953809479103	4.51429829112588	4.23984757716315	4.10935237875249	4.05082164181756	-0.561409480597373	0.243152126760685	0.640376848445943
Merged-chr11-84818207-4	chr11	84817712	84818712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145433, intron 2 of 4)	intron (NM_145433, intron 2 of 4)	1303.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	6.0557585978299	6.31583396844749	6.45121321754367	6.20319141510537	6.49340532932479	6.49304413070304	0.208537245520038	0.4770910751944	0.82311231975248
Merged-chr7-127968351-4	chr7	127967851	127968851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	872.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	6.64628358370449	6.23447761086473	6.1845363238101	6.19998344301476	6.19013872023151	6.30685344798754	-0.249463742718871	0.402126970101051	0.77787096574423
Merged-chr19-46337764-2	chr19	46337264	46338264	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164291, intron 1 of 8)	intron (NM_001164291, intron 1 of 8)	896.0	NM_001164294	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	3.29887892061044	3.1087224452216	3.26453744275085	2.96609108069985	3.09319091224103	3.10738278525055	-0.733582206610198	0.262361778537979	0.660368420241499
Merged-chr10-17788681-4	chr10	17788197	17789197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-7522.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.44494709958188	4.50123121193846	4.60285323730253	4.85068940007613	4.76251748328882	4.89625015292736	0.759257804958086	0.0606531481118766	0.319035789120237
Merged-chr13-119790046-3	chr13	119789557	119790557	+	663.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302550, intron 2 of 6)	intron (NM_001302550, intron 2 of 6)	401.0	NM_001302547	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	5.97996861612445	5.95267613835538	5.7631387090312	6.15782477685517	5.87684956156077	5.92740635544816	0.144509678731373	0.635529311375179	0.896578948151199
Merged-chr6-124321764-4	chr6	124321278	124322278	+	653.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170395, intron 11 of 16)	RLTR19-int|LTR|ERVK	17127.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	6.10337383446605	6.2202779396261	6.05221512962694	5.73472604509849	5.80121457649575	6.06903659256705	-0.460768079930615	0.125618294172796	0.474191879348443
Merged-chr7-141579211-3	chr7	141578662	141579662	+	969.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	16982.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	4.42923651270735	4.62330247757579	4.26153991566786	4.52771559002269	4.37118836811464	4.33095203068417	-0.106950452709881	0.812104585437659	0.955468494621222
Merged-chr3-108085925-4	chr3	108085430	108086430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	-46.0	NM_001358018	791415.0	Mm.374791	NM_001358018	ENSMUSG00000056411	Gm12500	-	predicted gene 12500	protein-coding	7.13832639916065	7.02431567424852	7.27037045333711	7.20478562438186	7.42790498594303	7.05730221691797	0.158179360826653	0.529279561906539	0.850847288056475
Merged-chr2-26909170-2	chr2	26908670	26909670	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033908, intron 1 of 3)	intron (NM_001033908, intron 1 of 3)	1472.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	3.11777301371798	3.16997300572426	3.38173358555323	3.3049401484052	3.2660267748804	3.88469816865908	1.08988557053063	0.0992838859336874	0.420054587927506
Merged-chr14-25856085-2	chr14	25855585	25856585	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13930.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	4.55399549696627	4.52024242041582	4.53917689013894	4.68452015368918	4.94598867355714	4.60674580846319	0.541502276139485	0.194055364846103	0.581296921414137
Merged-chr9-118040881-4	chr9	118040382	118041382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001048146, exon 1 of 7)	5' UTR (NM_001048146, exon 1 of 7)	360.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	8.82057438476636	9.08690711167167	8.77004472700826	8.88277813905133	9.13359682216996	8.65691958206848	0.0116675701841823	0.960116354556572	0.990335445597503
Merged-chr8-81014126-7	chr8	81013655	81014655	+	910.785706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027554, exon 1 of 10)	exon (NM_027554, exon 1 of 10)	751.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	6.81998857035469	7.19167490373767	6.98711457199642	7.40710889608219	7.62532551457367	7.59562243652455	0.795699628284092	0.0014675044119598	0.0243291705738895
Merged-chr1-59483669-7	chr1	59483084	59484084	+	901.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008057, exon 1 of 1)	exon (NM_008057, exon 1 of 1)	1437.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	4.46148397092629	4.35369589981518	4.82370874084164	4.37069519416516	4.58966255647316	4.71018149309509	0.0274130394291359	0.951411256170567	0.988807980335639
Merged-chr2-117249775-4	chr2	117249258	117250258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026620)	promoter-TSS (NM_026620)	19.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	6.74098238145828	6.73153341409095	6.15731482115798	6.45985268331629	6.43589475661806	6.38857009838579	-0.249806469150628	0.402087141893816	0.77787096574423
Merged-chr10-19043179-2	chr10	19042679	19043679	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27769.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.27257674298032	5.58601826860315	5.43637410086722	5.09372210696421	5.3214281797983	5.38112897762504	-0.335308832519475	0.343406869155217	0.732314994455709
Merged-chr1-136582070-4	chr1	136581558	136582558	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42843.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.98000842016597	6.31955124707351	5.98189397894872	6.60300164372408	6.92891881714895	6.37688720707297	0.906488234602776	0.00348710562307614	0.047064896137051
Merged-chr7-4924311-6	chr7	4923847	4924847	+	841.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201355, exon 3 of 3)	exon (NM_201355, exon 3 of 3)	1467.0	NM_001358883	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	3.24854493780501	2.82226177403418	3.21094659948952	3.10061381642025	3.11537542415421	3.33677923134938	0.333669617796591	0.630039351271438	0.894521283496465
Merged-chr18-67389864-3	chr18	67389424	67390424	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-807.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	6.0183405725571	5.73909074621529	5.40139428219378	5.75193913114762	5.61519227550521	5.6189893980091	-0.171278972795624	0.619012201903836	0.889566109324785
Merged-chr5-72270160-1	chr5	72269660	72270660	+	1000.0	f0_balb.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66817.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.09989434817027	3.66225444295045	3.9652407298878	4.02325916632422	3.63295481665946	3.78203863525217	-0.312554070944065	0.574095937929372	0.870523174873875
Merged-chr1-181230934-1	chr1	181230434	181231434	+	637.333313	f0_balb.idr	Intergenic	Intergenic	-18956.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	3.32279498619539	3.2369792331066	3.34632638316032	3.26323433148935	3.09452669240346	3.1902714289443	-0.497120535307644	0.426017928780092	0.793519426440139
Merged-chr14-26579031-3	chr14	26578520	26579520	+	698.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-530.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	5.34458905658412	5.59987639152535	5.54044024270193	5.42340042719585	5.27904472241092	5.46101834717892	-0.222977696488759	0.509805267610697	0.840575466220373
Merged-chr19-55293326-4	chr19	55292841	55293841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 17 of 21)	intron (NM_027976, intron 17 of 21)	22695.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	5.350114437531	5.25151448579235	5.35687294202082	5.51386469245936	5.38809117240094	5.32669757702211	0.189573758864591	0.574231045291764	0.87055929750801
Merged-chr5-36552588-2	chr5	36552088	36553088	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-21965.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	4.21209253854499	4.12417288400713	4.07162673844352	3.77041933662615	3.71084551461132	3.78901313859045	-1.20043890946038	0.0181278937806876	0.151596561377232
Merged-chr11-100705190-2	chr11	100704690	100705690	+	933.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-919.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	4.58258551456745	3.89040084535876	4.48794748034687	4.57339817447906	4.33895990302452	4.34012676821629	0.172351828760266	0.735703830527541	0.932822008846258
Merged-chr12-3282692-4	chr12	3282191	3283191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	27278.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	6.34523693632743	6.67574131165425	6.32630556250049	7.03435001453773	7.08955576787731	6.91538780050069	0.86025058726542	0.0014233042280396	0.0237716375364751
Merged-chr13-110558529-3	chr13	110558012	110559012	+	654.083313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163468.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.20178150424405	4.12412008631436	4.01747897026788	4.94811150612652	5.21305074255032	4.90508891693354	2.25348985397047	6.07068994166199e-07	3.4884666344324e-05
Merged-chr7-4238594-2	chr7	4238086	4239086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081239, exon 4 of 6)	exon (NM_001081239, exon 4 of 6)	832.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	8.66484641902501	8.73211714659705	8.53192792643071	8.76096398276998	9.08051734050663	8.60301620502538	0.259732900632066	0.254274076005799	0.651270631028434
Merged-chr1-143739599-4	chr1	143739093	143740093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-22.0	NM_023505	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	6.62349641092669	6.68778663391948	6.70274141110178	6.70344823715137	6.52732258502018	6.56326860863257	-0.112720545601612	0.660461887496669	0.905981809862142
Merged-chr9-65575525-4	chr9	65575042	65576042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	MIR|SINE|MIR	4545.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.7858384815462	7.43862622009631	7.52916156239189	7.73218540140758	7.74718780390659	7.605568285896	0.150420750448763	0.521492260271465	0.847076250198493
Merged-chr12-100444883-2	chr12	100444383	100445383	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75939.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.16377966489532	4.15481869962128	3.93389903434091	3.78152399829937	3.86468536417498	4.23583769660888	-0.376620816816181	0.468189723799722	0.818392725892343
Merged-chr10-88741613-4	chr10	88741132	88742132	+	932.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025859, intron 4 of 5)	C-rich|Low_complexity|Low_complexity	10218.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	3.8481426359565	3.77592148077549	3.83131712643314	3.75372315526261	3.75104726204723	3.90021156014491	-0.063391921545554	0.902728277315817	0.977585531827525
Merged-chr3-75743826-3	chr3	75743323	75744323	+	973.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88092.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	4.90681647588015	5.2624576757637	5.25051844739053	4.72288822619903	4.93313914488227	5.28354977998278	-0.330458258928793	0.414996479403876	0.786115461363139
Merged-chr1-156040053-2	chr1	156039442	156040442	+	780.0	f0_c57.idr|f1_balb.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-898.0	NM_001358626	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	4.72132247958043	4.64439069396596	4.64204191368046	4.72686967805099	5.06639599839323	5.04228306352562	0.643076064140482	0.108302452489635	0.439573016221011
Merged-chr7-99107029-4	chr7	99106511	99107511	+	982.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	34133.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.53136179632049	5.48745842036951	5.22365436336307	5.8692560351005	5.82398411807813	5.76997558591275	0.722166993380275	0.0268077332327671	0.194949997101213
Merged-chr12-102374251-2	chr12	102373751	102374751	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	MLT1C|LTR|ERVL-MaLR	65562.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.60113972985832	3.50568801729171	3.80702221459028	3.41616533452649	3.22980102430104	4.25303852238521	0.238578608408113	0.72767480456994	0.930204882969987
Merged-chr1-172515573-4	chr1	172515086	172516086	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5544.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	5.34780173842181	5.26950798862918	5.62657124355229	6.16642202185077	6.29216979382037	6.33374667906655	1.53386063684582	8.64408182272634e-07	4.77277213208635e-05
Merged-chr19-5489193-4	chr19	5488692	5489692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-813.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	6.0636797960509	6.1719099126434	6.34128173860706	6.56267740399377	6.80069643026349	6.88250718089761	0.913680985667722	0.000976622157635968	0.0176888934463591
Merged-chr3-96812602-4	chr3	96812131	96813131	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163497, intron 1 of 3)	MIRb|SINE|MIR	1890.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	4.16997012626717	4.08650157332655	4.0624389809878	4.24680576146979	3.68751828157006	4.13144288044872	-0.202867631618679	0.699890682251147	0.920753377048759
Merged-chr18-73815553-4	chr18	73815036	73816036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145494)	promoter-TSS (NM_145494)	-144.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	7.82131525667012	7.97598466244979	7.71863144652665	8.13514707434985	8.20548291127829	7.56035272431642	0.229226704649651	0.384186289762779	0.765357842816299
Merged-chr3-152569367-4	chr3	152568873	152569873	+	896.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-97540.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	3.89964232371975	3.82276872309215	3.73660198833179	3.74836541842259	3.54116003566362	3.75463813731303	-0.485910715791316	0.3671549147379	0.752113401392775
Merged-chr17-47687572-3	chr17	47687071	47688071	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045945)	promoter-TSS (NR_045945)	-39.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	7.71797000252377	8.140990307394	7.42820440112582	7.52455676332838	7.89226680048458	7.37166660796698	-0.26109720960051	0.370905588211227	0.755116600398165
Merged-chr5-143180777-4	chr5	143180243	143181243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045482)	promoter-TSS (NM_001045482)	32.0	NM_001359235	57782.0	Mm.320419	NM_021326	ENSMUSG00000061898	Rbak	-	RB-associated KRAB zinc finger	protein-coding	5.18713178207585	5.37150335367603	5.49991790363468	5.12175127059636	5.03028580922753	5.36530352215528	-0.372184023624378	0.304971297249282	0.701230797737315
Merged-chr16-91476547-3	chr16	91476037	91477037	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-8678.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	7.24237173982241	7.00603960082255	6.49888207799522	4.93148876746256	4.81225053311391	4.86743545737671	-3.88382126701404	1.94476545001728e-24	2.99666747342663e-21
Merged-chr11-96935233-4	chr11	96934750	96935750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_146026, exon 3 of 3)	3' UTR (NM_146026, exon 3 of 3)	5926.0	NM_146026	217138.0	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	4.5765417259825	5.00302947029915	4.78181473945982	4.76979494617776	4.85895134287532	5.02645586782012	0.181907912717889	0.657202784687092	0.904798742244684
Merged-chr17-72945405-3	chr17	72944919	72945919	+	717.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	27114.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.18356082384929	3.21938555941538	3.21615828600716	3.26010490977632	3.31539440984691	3.55727350739175	0.690373496086604	0.264950317515744	0.662790696671811
Merged-chr19-3326960-2	chr19	3326460	3327460	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	3659.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	3.14428449651967	3.28741050973173	3.50115605124745	2.88121678531952	3.21185804846944	3.41846781265228	-0.523565192472408	0.453098820015745	0.809617252901628
Merged-chr13-17695029-4	chr13	17694538	17695538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	-273.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	7.80703989189287	7.86052653150017	7.56408094658094	7.94034228188739	8.04538432418241	7.97566215901231	0.331303782470305	0.136508359988745	0.493594108201959
Merged-chr2-33088452-2	chr2	33087952	33088952	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	MLT1J2|LTR|ERVL-MaLR	-1199.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	2.65524177415701	2.61677064902481	2.98426187581026	2.68612829291282	2.73465555246758	2.70294738064641	-0.246384337188683	0.744077312539642	0.935881456525231
Merged-chr16-64873561-2	chr16	64873061	64874061	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21560.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	6.83297554700825	7.38664537170628	6.78359847449269	7.16495749664183	7.45048396115316	6.92036022735037	0.247119970205773	0.41657019482727	0.787467859490367
Merged-chr3-139039344-2	chr3	139038844	139039844	+	693.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	MTD|LTR|ERVL-MaLR	35857.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.43246002433196	4.12892100418767	4.20353895685126	4.34919814786795	4.09136150822588	4.40466453598925	0.0434902693912787	0.927102589525338	0.983578869536024
Merged-chr13-30987105-4	chr13	30986608	30987608	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13061.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	5.38849462845134	5.56536413304112	5.41592504036899	5.55037342244686	5.48543559262199	5.4489767486109	0.0658309879056448	0.841414172754974	0.962925544459975
Merged-chr15-6441852-3	chr15	6441428	6442428	+	756.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-3405.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	2.57545612422135	2.52928624795274	2.9034907094346	2.34041869579867	2.22028137045197	2.43678782674313	-2.30927088026968	0.0110382565815571	1
Merged-chr13-60739387-2	chr13	60738891	60739891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	46973.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.43871499270407	2.9636719792193	3.23466467732249	3.11412292416042	2.9095106311472	2.94551121962529	-1.04126431942771	0.138392180044624	0.497158283020873
Merged-chr6-29517336-4	chr6	29516827	29517827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9298.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	3.78902193169916	3.50085508885037	3.55605274302076	3.71530006361942	3.6279752080777	3.73419091963503	0.223699838194785	0.688185913637657	0.917193226920892
Merged-chr8-75110349-2	chr8	75109849	75110849	+	770.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008566, exon 4 of 17)	exon (NM_008566, exon 4 of 17)	840.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	2.83210951095854	2.92693141042133	2.96005601567016	3.03273429903488	3.40046489989666	3.1539543811537	1.39522315375872	0.0434843218714	0.262049860966283
Merged-chr18-64987010-4	chr18	64986479	64987479	+	976.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-36548.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.7168238990134	4.60434923368031	4.63730977747139	5.12950771819407	5.09002686164583	5.04771235077197	0.972160796546048	0.0111038110013454	0.108251424229636
Merged-chr13-89505044-4	chr13	89504534	89505534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35602.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	2.98942393006501	3.01107317974446	3.11595554356682	3.07779550964547	3.34771648978769	3.46081398523342	1.14183690294599	0.0829669912245159	0.381072941367273
Merged-chr2-11429766-4	chr2	11429241	11430241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31241.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	7.63834145255813	7.39961307740781	6.78694060277728	7.23288455768521	7.19191036326459	6.86227943179417	-0.331231417545112	0.282186971316514	0.680112776888672
Merged-chr6-22343369-4	chr6	22342882	22343882	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	12699.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	3.47472034674103	3.65058732796117	3.50068536154938	3.81722627097058	3.76117343992948	3.73638399963677	0.768655570349817	0.16323181374297	0.536951680487252
Merged-chr17-46525887-4	chr17	46525417	46526417	+	711.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 14 of 41)	exon (NM_001081335, exon 14 of 41)	20471.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	2.1407025402366	1.93580005262118	2.22957860715159	1.84411015883012	1.83736462854049	1.90647917195549	-2.16830880037716	0.038502995590008	1
Merged-chr9-96376062-4	chr9	96375548	96376548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11617.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.68822170228453	5.43813974846522	5.88717830812045	6.12876517917922	6.47242349040212	6.32828266379122	1.12831865537296	0.000354546577541767	0.00800008627711845
Merged-chr6-84751595-4	chr6	84751082	84752082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	Lx5|LINE|L1	-157674.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.61854140926034	6.50788376093602	6.50826507268529	6.4812486588981	6.76180082825089	6.73302396309351	0.188263758614947	0.477789203411511	0.823367525497911
Merged-chr3-105927213-3	chr3	105926716	105927716	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033780, exon 4 of 6)	exon (NM_001033780, exon 4 of 6)	5448.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	3.10872070242835	2.99526411367597	3.64649745976248	3.30613427921907	3.15380523468364	2.94696208989291	-0.542156012711641	0.455215594921444	0.810850567748235
Merged-chr5-146233047-1	chr5	146232547	146233547	+	724.0	f0_balb.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	1797.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	3.06907285056643	3.69632272614026	3.50217154310576	3.59883288322205	3.14263156495616	3.62555079026735	0.080849647632296	0.906745247234354	0.978838075044546
Merged-chr15-102331738-4	chr15	102331232	102332232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021713)	promoter-TSS (NM_021713)	23.0	NM_021713	60315.0	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	4.78927408671341	5.19973166947891	4.92623002125008	4.79354660567825	4.55909942134287	4.72532370508109	-0.670422090763339	0.101478763423176	0.424911682111292
Merged-chr5-32132602-2	chr5	32132102	32133102	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3870.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.48371855913646	3.49787496291823	3.70119381665744	3.41672366616885	3.29960524487016	3.62113521923668	-0.425066917247448	0.471203394481855	0.819888573544447
Merged-chr4-46650204-4	chr4	46649723	46650723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198664)	promoter-TSS (NM_198664)	-24.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	5.78747137244324	6.66236676984286	6.34668324462688	6.24090445811632	5.90944457945178	6.07978094316047	-0.398891402415373	0.260683310321058	0.658178689318929
Merged-chr11-20939710-1	chr11	20939210	20940210	+	1000.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-108602.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	2.63343827657489	2.59654543663302	2.78959452370727	2.83368259327504	2.7350167611975	2.61154057238583	0.33196240306232	0.658129983876793	1
Merged-chr16-64935130-3	chr16	64934641	64935641	+	829.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008310, intron 2 of 2)	MLT1A1|LTR|ERVL-MaLR	83140.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	2.84510876278812	3.01840769108682	2.72947936710281	3.16901764475075	3.1157909980788	3.23757221852151	1.36876727377563	0.0578187782517838	0.310747343130342
Merged-chr3-79566846-4	chr3	79566354	79567354	+	961.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	825.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	6.68854185023198	6.94957133169585	6.48380037546659	6.52575611894351	6.45587494555895	6.14844580504512	-0.53478980011605	0.0678959677016965	0.340967329381542
Merged-chr11-59809838-4	chr11	59809374	59810374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	165.0	NM_001271356	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	9.33024230335963	9.64226404879514	9.17623745177966	9.28459493604023	9.52053485855173	8.96395735914458	-0.161943000616442	0.511963147505431	0.841619835183182
Merged-chr15-103332199-2	chr15	103331699	103332699	+	807.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	2139.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	4.62870369249392	5.03473944154393	4.99832283494587	4.90371914219201	4.71483368253724	5.09530863164167	0.0129591205499704	0.974898504726115	0.994382735882691
Merged-chr3-59206161-3	chr3	59205650	59206650	+	752.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4732.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	7.86294589380563	7.92562751249259	7.60223849279655	7.64882635078592	7.93590169014096	7.65889071729402	-0.0711945130822402	0.765029309189738	0.942123616786297
Merged-chr2-32364037-2	chr2	32363537	32364537	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252536, intron 3 of 18)	intron (NM_001252536, intron 3 of 18)	839.0	NM_028412	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	3.78967646845493	4.01777140767028	3.98564899526545	3.8158578619798	4.02498320340176	4.1003292160509	0.152016634463595	0.765896882046388	0.942315053650124
Merged-chr11-98919716-2	chr11	98919216	98920216	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 10 of 11)	B1_Mur4|SINE|Alu	11565.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	2.33806705577032	2.43695148242334	2.61689565359851	2.91324136715432	2.6662284217175	2.87675692228051	2.14178409376204	0.0105679288468523	0.104471453426267
Merged-chr13-12469747-3	chr13	12469239	12470239	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8001.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	4.69689819146067	4.73895140273652	4.51239135310303	4.57991745192055	4.36979243208078	4.70159822310399	-0.27381919026668	0.521461145122285	0.847076250198493
Merged-chr4-152318880-6	chr4	152318287	152319287	+	805.847229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033489)	promoter-TSS (NM_001033489)	-162.0	NM_001033489	433809.0	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	2.06275248897546	2.06844542270325	2.39786425482085	2.05467039931471	1.85622550943135	2.15604837520049	-1.19702850318808	0.225187671625913	1
Merged-chr2-52948570-2	chr2	52948070	52949070	+	836.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	B3|SINE|B2	90702.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.86137691138071	3.81516567530539	4.11570643442402	3.98518241292806	3.75173522697048	4.13896187614795	0.0898618222410193	0.863995488244244	0.968269312109804
Merged-chr9-61025556-4	chr9	61025055	61026055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8486.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.04141725347688	3.88092144819509	3.8294570270282	3.67626629801872	3.72976207392555	3.68771247678646	-0.725622384769727	0.169471656136929	0.546370379971568
Merged-chr15-98935625-2	chr15	98935125	98936125	+	796.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1235.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	4.38507410354366	4.73645008818718	4.85068605302912	5.12025480190018	5.04756585033271	5.18608624742404	1.00227870568942	0.0134083111984627	0.123217263028658
Merged-chr7-132308032-3	chr7	132307535	132308535	+	839.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	MER34A1|LTR|ERV1	-7629.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.23644419953449	3.06954767772821	3.05118564104502	3.20196143571714	3.01082150256057	3.40244280382685	0.358091455092844	0.590431351117899	0.877218317361274
Merged-chr12-40464069-4	chr12	40463581	40464581	+	854.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	18028.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.15309550237617	3.88508468436773	3.87804868938315	3.8817031046403	3.77498641578151	4.0922757387347	-0.208805078165464	0.688238096548331	0.917193226920892
Merged-chr7-80855585-2	chr7	80855085	80856085	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6523.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	3.0640739581612	2.89787452045001	2.7636403863901	3.01257913965134	2.84344174223336	3.24721180901365	0.57056051775577	0.433562149763953	0.797815674529737
Merged-chr14-31399551-4	chr14	31399099	31400099	+	877.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	RSINE1|SINE|B4	18078.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.50230759422924	5.33835883164932	5.56764743942253	5.56911488582113	5.34407859665053	5.33656091959376	-0.0879178897076609	0.795523501499364	0.951171392009988
Merged-chr3-9082497-3	chr3	9081989	9082989	+	806.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20525.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	3.13286866089927	3.24746618606715	3.27608344118938	3.36178373541276	3.07893750412524	3.23373499932282	0.0351500637776268	0.955869911905734	0.989783387008628
Merged-chr2-31143647-2	chr2	31143147	31144147	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1639.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.21040509435627	4.08662668981523	4.02471447641343	3.76951931518254	3.73240020198583	3.84359978771492	-1.03725736249384	0.0409575245945823	0.252462679195941
Merged-chr5-66068070-2	chr5	66067570	66068570	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30109.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.76425048012495	6.66853054149386	6.82328696778211	7.01510835206991	7.08379722901146	6.62326306434945	0.285447534922791	0.287294181128168	0.68462852545501
Merged-chr2-57331436-4	chr2	57330948	57331948	+	822.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 6 of 16)	RSINE1|SINE|B4	93066.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	4.37005796414656	4.71689718090797	4.14331381776967	4.05632294258337	4.21379567889905	4.4419773819307	-0.524945003462499	0.288440770351438	0.685887620581918
Merged-chr10-60269816-4	chr10	60269332	60270332	+	886.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7796.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.03736488944838	6.27184906318754	6.50964504646109	6.33470532763894	6.39575028748956	6.33555255381845	0.133121725743155	0.646584246299585	0.90100465546023
Merged-chr17-8846675-4	chr17	8846169	8847169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-3316.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.38997573867499	4.47192414001163	4.48588473274125	3.71401243761224	3.63643414571371	4.07909240080609	-1.91388426848287	0.000228152741848518	0.00557209666678353
Merged-chr5-76951255-4	chr5	76950767	76951767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356973)	promoter-TSS (NM_001356973)	-35.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	6.3225288934131	6.41238050113697	6.64968837437624	6.78607194477321	6.50994914779879	6.56018852544188	0.26469576099623	0.338991377731251	0.728951920358235
Merged-chr2-165919954-2	chr2	165919454	165920454	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35116.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.26869185600933	4.35856878234318	4.60495166972715	4.3965273709544	4.52713312665874	4.77990948485723	0.403408245678038	0.367135519475926	0.752113401392775
Merged-chr12-12278643-6	chr12	12278169	12279169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	16530.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	8.01642087495386	8.07348610162891	7.6074647604079	7.87857723853373	7.97213267306356	7.71183153463825	-0.0859590578819682	0.724906691991362	0.929475409375828
Merged-chr17-22225183-1	chr17	22224683	22225683	+	811.0	f0_c57.idr	intron (NM_001205095, intron 1 of 4)	Lx2|LINE|L1	431.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	6.99104661519058	7.7449118838665	7.02714113538232	7.54923041901205	7.67064280797047	7.30428905492938	0.302451416880055	0.324842061923148	0.717755195025185
Merged-chr11-67965593-4	chr11	67965061	67966061	+	775.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	81.0	NM_027963	71860.0	Mm.441823	NM_027963	ENSMUSG00000020904	Cfap52	1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16	cilia and flagella associated protein 52	protein-coding	3.43721374264971	3.66814581237935	3.37104266725816	3.77996720814267	3.80821244123775	3.82975761652028	1.02318514793513	0.0736921156973876	0.35673692560217
Merged-chr1-156614882-2	chr1	156614382	156615382	+	620.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	B2_Mm2|SINE|B2	56095.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	5.65841612759313	6.09388052201049	5.5208828112086	5.2844549798173	5.21434591395294	4.95849348861375	-1.19320506760281	0.00143059172707468	0.0238574361879084
Merged-chr7-81784843-1	chr7	81784343	81785343	+	721.0	f1_c57bl6.idr	intron (NM_026077, intron 3 of 4)	ERVB7_4-LTR_MM|LTR|ERVK	4610.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	2.22478390415317	2.31141876058902	2.4060674527912	2.40954246551152	2.23734881925111	2.78228255837994	1.09482102393401	0.211154883812282	1
Merged-chr2-131353606-4	chr2	131353108	131354108	+	623.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-716.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	4.66752890047739	4.5226585068507	4.4056194462471	4.45252403466346	4.48159662438456	4.07937226436473	-0.451734699415092	0.330569547145542	0.721995374054402
Merged-chr15-5188172-4	chr15	5187671	5188671	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355621, intron 2 of 5)	intron (NM_001355621, intron 2 of 5)	2611.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	3.95947905685635	3.62531763631539	3.85338798197904	3.84597689375346	4.10340346985148	3.65380380855005	0.224383610158388	0.687174522972023	0.916983035113856
Merged-chr6-116724670-4	chr6	116724165	116725165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7907.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	5.61235805003976	5.57169617244037	5.70234458952458	5.52151864750998	5.5967169046264	5.63264049717032	-0.0788271144502847	0.803428792815144	0.953504424667369
Merged-chr19-29467390-2	chr19	29466890	29467890	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MLTR18C_MM|LTR|ERVK	54597.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.23124356461032	3.11910042433971	3.16553691496141	3.19629009516651	2.92047987726539	3.29363738845553	-0.145090857896809	0.826712390532428	0.959260889561903
Merged-chr6-86536194-1	chr6	86535694	86536694	+	545.0	f1_balb.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	8793.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	2.98187878413729	3.05577992635524	2.9413143102965	3.23383227096206	3.277620452124	3.13905155131454	0.992753139342285	0.131599830917453	0.485056865159663
Merged-chr7-144470173-2	chr7	144469673	144470673	+	852.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357116, intron 1 of 15)	intron (NM_001357116, intron 1 of 15)	762.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	4.63271850558506	4.5836763098935	5.1285888522124	5.30541984663313	4.89150885713609	5.16067573222059	0.72814368122553	0.0848480647493759	0.385758802798497
Merged-chr17-70970356-4	chr17	70969869	70970869	+	825.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	20147.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.34069758370506	3.79422760666544	4.13101962759025	4.65595095019467	4.49323898591009	4.43250086932979	1.11505035615291	0.024854341112073	0.186381375576444
Merged-chr11-5509980-2	chr11	5509482	5510482	+	975.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10659.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	4.52321260920983	4.60911951253952	4.77658191650724	5.14220493627058	5.3873435410608	5.3475702909091	1.45598600451877	0.000147585020682812	0.00391964711170616
Merged-chr6-58831028-1	chr6	58830528	58831528	+	762.0	f0_balb.idr	promoter-TSS (NM_001361967)	promoter-TSS (NM_001361967)	-437.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	4.099222199145	3.86466280781875	4.3963980182288	3.68678877537343	3.75312238624635	3.9003305400254	-1.06985469241304	0.046938818859656	0.274302577512285
Merged-chr15-93268225-4	chr15	93267719	93268719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	6960.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	4.4094891712529	4.05502918770281	4.22017436869321	4.17939060272111	4.55739146656896	4.33434412231955	0.360452782328757	0.452204088075413	0.809287171690518
Merged-chr10-128370100-2	chr10	128369600	128370600	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-63.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	6.53201065430446	6.20580494882288	5.98583243421815	6.34780632423035	6.428553748626	6.04776398681123	0.0377573254386629	0.904495667357431	0.978131323042371
Merged-chr5-99379136-2	chr5	99378636	99379636	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126209.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.92096593377322	7.84651387954212	7.75820477681579	7.97168282909067	8.43596784556973	7.89101382306969	0.406233442220359	0.10441933654677	0.431149471783625
Merged-chr15-74957818-2	chr15	74957322	74958322	+	574.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164036, exon 2 of 4)	exon (NM_001164036, exon 2 of 4)	2716.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.65053174600273	6.99158357981553	6.92189497304138	7.46403244631333	7.60003531007753	7.1683585439417	0.855800492056148	0.0011843508126904	0.0205672336009901
Merged-chr9-13671370-4	chr9	13670859	13671859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	8899.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.02772719354129	3.819775212808	3.92936576299732	3.9713444043923	3.66800862808773	3.84830980006103	-0.306022968270517	0.559736396209244	0.865086854188098
Merged-chr6-83598205-4	chr6	83597695	83598695	+	989.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25691.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	5.94895053767064	5.735591440794	5.3287977799238	6.17883166043793	6.17163173076101	5.56330798303949	0.536047309391357	0.150328456507471	0.517246479850651
Merged-chr1-172314284-4	chr1	172313797	172314797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	1930.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	7.92292761055691	7.81687914560445	7.1893395661923	6.88698471645506	6.87303374067894	6.41303164257858	-1.3982804800802	5.70158689439137e-06	0.000246963895007036
Merged-chr10-41475458-2	chr10	41474958	41475958	+	981.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164433)	promoter-TSS (NM_001164433)	-856.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	4.01335257705589	3.9358337796502	3.88630681387208	3.88948213689271	3.86329717700619	4.14478002532268	0.0430474267582785	0.932214823949021	0.985074623409702
Merged-chr17-34649393-4	chr17	34648885	34649885	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2239.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	4.74270473643007	4.18664552997027	4.47782952447967	4.45139885330014	4.56311056075441	4.45914593343787	0.00875958955392393	0.984865938634842	0.996809856127782
Merged-chr4-53228673-4	chr4	53228173	53229173	+	909.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17523.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	6.58365052581123	6.16634731320006	6.21517891806124	6.33792384059217	6.04183786778703	5.70498959003747	-0.464140225064122	0.162792275913051	0.536188662408322
Merged-chr17-26536406-1	chr17	26535906	26536906	+	604.0	f1_c57bl6.idr	Intergenic	Intergenic	-25106.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	8.32726439596181	8.35949800694469	8.11883428783484	8.06050038198167	8.42386880867197	7.97485997595882	-0.140354055397524	0.555445032561243	0.863239342468185
Merged-chr6-87731897-2	chr6	87731397	87732397	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159697, intron 1 of 7)	intron (NM_001159697, intron 1 of 7)	1028.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	2.96204531795453	2.75535744014877	3.23951663311525	2.83189880546314	2.76621164658948	2.92074408988909	-0.753952964711441	0.301810545596044	0.698499477656988
Merged-chr8-123045066-2	chr8	123044590	123045590	+	919.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045268)	TTS (NR_045268)	2515.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	3.55404281007792	3.63600393963002	3.48480030038265	3.22351285377714	3.16432567458701	3.44674119881218	-1.128455949152	0.0644929854559042	0.331036297278656
Merged-chr5-96160683-4	chr5	96160168	96161168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	879.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	6.90023867808894	7.43284158274333	7.08566674335893	6.80424901548414	6.79057205560939	6.95851151020724	-0.480155228856216	0.0781501033421301	0.369178710054046
Merged-chr10-62600121-2	chr10	62599621	62600621	+	682.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	intron (NM_019553, intron 1 of 14)	2177.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	3.35727975303743	3.14465531978672	3.30176727916251	3.22116556063207	3.0814206953648	3.01989230916725	-0.679623949053806	0.296021568024555	0.692779918635739
Merged-chr11-34034965-4	chr11	34034460	34035460	+	999.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MIRc|SINE|MIR	-11968.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.42046081787037	7.27735922768565	7.24610106246001	7.32013119691604	7.49064284647292	7.31512462545869	0.0931852277208294	0.689564440402249	0.917397716197234
Merged-chr5-146729461-2	chr5	146728961	146729961	+	581.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	65495.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.48384293682869	2.26996181118469	2.36781654653419	2.43864818828381	2.26935389938526	2.75241655116466	0.72929637111508	0.397290727818006	1
Merged-chr6-120474410-2	chr6	120473910	120474910	+	571.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008359, exon 5 of 13)	exon (NM_008359, exon 5 of 13)	11213.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	5.0007047030649	5.11178424823408	5.24259105654114	4.83401247853847	4.71655222693672	4.79842818675172	-0.743559386161797	0.0510973164315258	0.288114488421387
Merged-chr11-61839524-7	chr11	61839007	61840007	+	973.26532	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 5 of 26)	B1_Mur4|SINE|Alu	15585.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	6.36232489036463	5.80180736049645	5.99223094389548	6.41136354953766	6.4705927389851	6.27438760706503	0.522898637669983	0.0942148546476152	0.408942599140259
Merged-chr3-142295054-4	chr3	142294551	142295551	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96799.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	3.09473539162265	3.23382379658835	3.35025262531641	3.31797517764787	3.21610772417135	3.67395281559233	0.722128590490161	0.260174326464016	0.657649400461384
Merged-chr3-116483485-3	chr3	116482992	116483992	+	819.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24683.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	4.68240626479403	4.53250526246618	4.87506258642727	4.87736791760801	4.92639965304194	4.93978783503075	0.503712560180555	0.204877676089781	0.595565318337007
Merged-chr8-26118769-4	chr8	26118245	26119245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357292)	promoter-TSS (NM_001357292)	479.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	7.65175786611115	8.15839281969102	7.57503830880361	7.5617727208006	7.68106761180379	7.68849286341672	-0.267266537471356	0.305406468612069	0.701550435918422
Merged-chr5-105876446-4	chr5	105875961	105876961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-107.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	8.16119210975767	7.88471200517195	7.85474677816214	7.9508891377484	7.69503513196279	7.58677400145171	-0.316263296025589	0.187178565242017	0.572128204607461
Merged-chr12-84611190-2	chr12	84610690	84611690	+	588.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008992, intron 7 of 18)	intron (NM_008992, intron 7 of 18)	6276.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	3.6404744615612	3.57281573051307	3.60632127683451	3.72787395063218	3.40202398287621	3.51284483020908	-0.191864033476721	0.737108237932649	0.933521594220786
Merged-chr2-27425871-4	chr2	27425387	27426387	+	842.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	CpG	1721.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.94663742770965	6.38234169622774	6.24498103015834	6.1773878325978	5.94994402283634	5.95521533224808	-0.293092703543139	0.340876168387877	0.730588162151777
Merged-chr6-71456074-2	chr6	71455574	71456574	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-15437.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	3.70143895934437	3.9650030615586	3.86654352596185	4.33746333910938	4.14979923861079	3.98964008752045	0.949899915059677	0.0637821162630827	0.329045962553077
Merged-chr17-65950753-3	chr17	65950253	65951253	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 1 of 4)	CpG	434.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	4.66008394721883	4.3327023398678	4.13685562895196	4.6098050541996	4.2082484882466	3.93479762689527	-0.296252823971681	0.576585695801496	0.871619326276745
Merged-chr7-16022724-1	chr7	16022224	16023224	+	565.666687	f1_balb.idr	Intergenic	B1F2|SINE|Alu	-23229.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.76355899014873	3.77753452519605	4.30058987188011	3.69691507112185	3.94568017804993	4.32696457586115	0.134141383665296	0.815431293005893	0.956370078970016
Merged-chr8-47676834-2	chr8	47676334	47677334	+	885.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1675.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	5.83701255127702	6.01412535533699	6.20035007409773	6.06864045673958	6.39009245929512	6.33770182070486	0.437700412645252	0.146263414194948	0.51013481025834
Merged-chr11-88048379-4	chr11	88047875	88048875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001078167, intron 1 of 2)	CpG	1002.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	7.81944221566667	8.11174399283978	8.02605647844972	8.11166378481541	8.16478190746652	8.17155909432215	0.223535223689162	0.303169310811312	0.699862332768671
Merged-chr4-132807946-2	chr4	132807446	132808446	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11582.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.56963473770227	6.43396163608592	6.53195159064092	6.63368549757668	7.02361997471891	6.7717687280455	0.498452332929627	0.0648946577156326	0.33210865854003
Merged-chr2-31784825-2	chr2	31784325	31785325	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	24652.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.11820271255415	4.20277981772208	3.650240559507	4.15686902177963	4.03024072686587	3.95065038836711	0.080172385117126	0.882538758016842	0.973184220613163
Merged-chr8-119412807-4	chr8	119412282	119413282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17890.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	4.43043330033921	4.11515641602909	4.61153591267319	4.41384088855235	3.93169934300185	4.4436877019044	-0.311592099842421	0.539085547674515	0.855750032878982
Merged-chr6-82913528-3	chr6	82913040	82914040	+	998.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011350, exon 14 of 14)	exon (NM_011350, exon 14 of 14)	26229.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	4.12522100300895	4.11669612724609	3.78580949921088	4.1213696055041	3.7233950096119	3.91132720545467	-0.299038683955695	0.575145175214922	0.87094931637326
Merged-chr15-77875014-4	chr15	77874505	77875505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32830.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.98222683276229	3.77224681885028	3.60488417252286	3.93678716953831	3.95606003738862	3.99521239802997	0.488801713458914	0.357339493487892	0.743899047815599
Merged-chr6-114296181-2	chr6	114295681	114296681	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13546.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	3.45385163480116	3.1208748892902	3.34942431728041	3.60002592799416	3.24235035330394	3.11960409780505	0.093856403484864	0.88728163782256	0.973836995667151
Merged-chr7-132788003-3	chr7	132787495	132788495	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-1060.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.29199225393123	3.22834493457791	3.35967807151397	3.0483748291229	2.87214390994777	2.96770718343119	-1.51256168039457	0.02517899267347	0.18785023064414
Merged-chr2-156312152-3	chr2	156311668	156312668	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-305.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	8.58817332279982	8.69500429142919	8.30993719116406	8.68043975856155	8.81863863898088	8.65974695951882	0.244050437894339	0.26296463809577	0.660990291111768
Merged-chr4-56953343-4	chr4	56952835	56953835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5906.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	2.79125407210382	2.71448570321501	2.87783634835204	2.59308838003483	2.66122689399191	2.77155257664635	-0.636884073085259	0.388869007059594	0.768757717733778
Merged-chr8-36868192-2	chr8	36867697	36868697	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84245.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.51079522737571	4.6849729939248	4.47476508348427	4.84924299013881	5.06923035768666	4.94449351622034	0.905246502424348	0.025457802646977	0.189150177931035
Merged-chr8-116922476-2	chr8	116921976	116922976	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028131, intron 2 of 11)	intron (NM_028131, intron 2 of 11)	736.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	5.65664228193288	5.82834807044069	5.60849814577125	5.47337750002604	5.64044819646708	5.55780884759305	-0.267789914189312	0.404776834679475	0.779791650050306
Merged-chr16-43108021-4	chr16	43107530	43108530	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-139254.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	4.50089058607408	4.4556883371896	4.58745310157435	3.99329461246288	3.95803913350407	4.23899811016319	-1.24509478888712	0.00767474522279664	0.0835281793853729
Merged-chr10-7833811-4	chr10	7833296	7834296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	1326.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	7.87696503437489	7.89948110156713	7.48689474318664	7.62879731521235	7.90143651545433	7.56445808137415	-0.0894678349269522	0.720857308657734	0.928324696220711
Merged-chr15-6601071-2	chr15	6600571	6601571	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	B1_Mur2|SINE|Alu	21224.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.95436925421933	7.15494101484224	6.82117945204297	6.8559318281817	6.7738707449047	6.84959691560224	-0.257593500880222	0.309741062665832	0.705431349180198
Merged-chr2-118536702-2	chr2	118536270	118537270	+	991.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7817.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.15032111252614	3.7905778028674	3.77769089612546	4.57606106208135	4.3692781721119	4.60368907889275	1.62550116302384	0.00149368670784955	0.0246551643695191
Merged-chr11-103021495-4	chr11	103021007	103022007	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4360.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	6.5731726119803	6.35676943944798	6.22743242897043	6.5463156656944	6.34445157211369	5.7313745131696	-0.220463965069186	0.516227406890715	0.844051513295388
Merged-chr16-8831071-4	chr16	8830578	8831578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 1 of 3)	CpG	978.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	8.23404391545406	8.75946334413151	8.4855443851881	8.16277222902959	8.32590829652011	8.68426697885576	-0.147274116493948	0.569119140307594	0.8688875602138
Merged-chr19-56699880-4	chr19	56699383	56700383	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22489.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.23638546014772	3.499760020088	3.35252598930034	3.32111653170737	3.31298291897552	3.19006583014919	-0.356662043709922	0.565142140477062	0.866552670637515
Merged-chr7-120834246-2	chr7	120833746	120834746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8585.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.91758920210423	4.25499708794825	4.02869812698104	4.2767712601663	4.46201224412316	3.99550783248819	0.525861796357184	0.299726326909435	0.696404227897918
Merged-chr11-58981445-2	chr11	58980923	58981923	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 2 of 5)	intron (NM_053168, intron 2 of 5)	3330.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	2.74553275947108	2.85423929911629	2.78147723445481	3.31676929858358	2.85952674975198	3.48887892439867	2.07620136434653	0.00652864165632866	0.074303818210887
Merged-chr3-103213713-4	chr3	103213214	103214214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	42059.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	5.78752211981958	5.81677714236655	5.96711021172872	6.93636473799133	7.11290337253468	7.15948175503719	1.98130460969852	2.32879311456472e-13	5.02005744758293e-11
Merged-chr5-146773235-2	chr5	146772735	146773735	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	21721.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.47236271867794	4.41025277574595	4.88341176552046	5.08295497169892	4.94597112806243	5.11540414170519	1.03797320858904	0.0122528958411529	0.115909385760647
Merged-chr3-106549793-2	chr3	106549293	106550293	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286987, intron 1 of 7)	intron (NM_001286987, intron 1 of 7)	-1991.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	6.71528594206221	6.88922893398362	6.79689392933275	7.11279067531366	7.37811934975563	6.85561854200463	0.52219382298348	0.0519101185411462	0.290884042263566
Merged-chr11-70490393-4	chr11	70489876	70490876	+	955.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-14898.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	6.82837843827521	6.64799301358531	6.66161842513713	6.40984318547351	6.59249853348869	6.27712486682429	-0.43538662613443	0.109291366779517	0.441756599874941
Merged-chr2-69898303-9	chr2	69897704	69898704	+	999.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177783, intron 1 of 38)	intron (NM_177783, intron 1 of 38)	958.0	NM_177783	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	6.33217936055923	6.5082789637679	6.53322481648635	6.41949178670124	6.0784512521017	6.59219525561787	-0.146915968017454	0.618951357956681	0.889524760662882
Merged-chr13-64432405-4	chr13	64431898	64432898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	-155.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	6.22788248906171	6.40735038277824	6.19605561388148	6.14485777699011	6.26446773124865	6.10412138465316	-0.178255275054722	0.527865923328516	0.850219758590516
Merged-chr10-58495789-2	chr10	58495289	58496289	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2148.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	3.0550914992132	3.06829761124334	3.44217367366975	2.97984615547699	3.08479701732601	3.35879782724413	-0.203772989622136	0.764440931559934	0.941979298344481
Merged-chr12-16899718-2	chr12	16899205	16900205	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	B1_Mus2|SINE|Alu	4727.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.02691168867247	4.31990607219168	4.2946291526095	4.05442894056704	4.30360689621705	4.22886608549777	-0.0423723507158044	0.929524632643588	0.984181679323649
Merged-chr1-34441330-2	chr1	34440830	34441830	+	976.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178601, intron 2 of 8)	B3A|SINE|B2	1501.0	NM_178601	27993.0	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	2.75195735315044	2.97785248397088	2.83313986315198	2.95328086068445	2.83817462297336	3.02665607402108	0.375767514692082	0.594463000541499	0.879064446659032
Merged-chr4-59815611-4	chr4	59815120	59816120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9970.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	6.28331884255924	6.28414037747966	6.40297722794492	6.3356270257662	6.20990434463744	6.56573379536442	0.0780780377502678	0.781346840684816	0.946174647340264
Merged-chr15-50867096-4	chr15	50866608	50867608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	21941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.860721977234	6.56164743780214	5.96048301191908	6.59067784382166	6.44879105609354	6.52234726792078	-0.0109481843615749	0.973635935538028	0.994039095662068
Merged-chr13-95778946-4	chr13	95778472	95779472	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	82052.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	3.60159089953631	3.5133277728222	3.60975832139763	4.04707147270662	3.98037512867128	4.08429635531012	1.51450819446606	0.00437342539816934	0.0556683464174506
Merged-chr15-8109191-4	chr15	8108673	8109673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133227)	promoter-TSS (NM_133227)	-140.0	NM_133227	170762.0	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	6.67280746202563	7.05047450564519	7.04385001960287	7.12713960894579	6.78753296605516	6.80811230241112	-0.0209101091227101	0.93934507026579	0.986656947908622
Merged-chr8-75071217-2	chr8	75070717	75071717	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22401.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.0660764124816	3.0943736911505	3.13752896651101	2.89731482465109	3.07298907246917	3.03452835648106	-0.418695770247061	0.529067434424925	0.850744851459613
Merged-chr12-83690055-2	chr12	83689555	83690555	+	616.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	1492.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	6.06001919031073	6.33119780999509	6.21694404373405	6.62287761529063	6.56627358197973	6.12317269577605	0.425175042813811	0.156869806605119	0.527749276998291
Merged-chr7-97376121-4	chr7	97375608	97376608	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199035, intron 2 of 12)	intron (NM_199035, intron 2 of 12)	4491.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	4.12201709087343	4.36426507194441	4.55393391250215	4.6862699975346	4.11776075535575	4.96838699627825	0.682398628495053	0.183545464610909	0.566825684946619
Merged-chr18-37933256-4	chr18	37932779	37933779	+	886.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	2197.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	4.88584944795427	4.80188668097977	4.88614267266478	4.921038217269	5.05402816855149	4.75801348768411	0.157130256558879	0.685107208198429	0.916158929855081
Merged-chr13-105300130-4	chr13	105299628	105300628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5643.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.6173365756871	6.38242314866438	6.76336452231287	6.58287013329642	6.71155137787804	6.76221141575621	0.154757720305928	0.56714021705226	0.867793364848923
Merged-chr2-83644449-4	chr2	83643951	83644951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026934)	promoter-TSS (NM_026934)	-127.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	7.00912113098139	7.15977717352544	6.99091370687478	7.07966406661517	6.90602140642371	6.9521118020267	-0.120191750702026	0.621822893930843	0.890864828060259
Merged-chr2-21183591-2	chr2	21183091	21184091	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	21774.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	5.53573726795726	5.51944909270107	5.64411659072953	5.11010889184763	5.20553469030558	5.91458572435789	-0.218956547559987	0.577540531758749	0.872148719828391
Merged-chr8-69625410-8	chr8	69624941	69625941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045553)	promoter-TSS (NM_001045553)	107.0	NM_172754	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	8.18897579847875	7.98288690631377	7.80693087996471	8.25197136208644	7.85761993474453	7.68210764763416	-0.0696059602991324	0.788480598106268	0.948954880993192
Merged-chr1-55837583-2	chr1	55837083	55838083	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93658.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.98930929644634	4.18298179718165	4.37640828115278	4.64204636327305	4.65046478709275	4.11156785713657	0.824257182193769	0.0945010044777565	0.409774560300836
Merged-chr6-88030620-4	chr6	88030119	88031119	+	979.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-10824.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.60770533990337	4.88726519327294	5.1933556763232	4.53877032948574	4.85513821083895	5.34013731887333	0.0761117249541268	0.869433651147278	0.969788171765313
Merged-chr8-80793977-3	chr8	80793452	80794452	+	775.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 2 of 9)	intron (NM_021356, intron 2 of 9)	-54493.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	3.78445001955759	3.84021805167583	3.99130526916769	3.56962290305254	3.60581877716156	3.49711974742418	-1.04060126873183	0.059617751852387	0.316047011731232
Merged-chr5-92503042-3	chr5	92502475	92503475	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	Arthur1A|DNA|hAT-Tip100	2682.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.01235230037798	6.1389852601908	6.31570649908137	5.99691508049571	6.12048060100305	6.28102637967225	-0.0361252105250397	0.902243203692529	0.977426235982703
Merged-chr16-22655791-2	chr16	22655291	22656291	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	1440.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	3.03767315845782	3.01916834053234	3.05716550007368	3.0660609412693	3.24991549970742	3.12954942113734	0.519866157275347	0.424598454729643	0.792703184301738
Merged-chr3-14641638-4	chr3	14641147	14642147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024495)	promoter-TSS (NM_024495)	-80.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	7.77533898160187	7.71059586609912	7.45521518468546	7.27800441933434	6.99207245935908	6.59510078638287	-0.98217636348522	0.000509180693595924	0.0106291789143827
Merged-chr2-18609680-3	chr2	18609079	18610079	+	662.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-62883.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	2.60610393098026	2.71692407279158	2.43350497079399	2.72392665835599	2.68441558507203	2.83229472763016	0.817734880328667	0.302601722869108	1
Merged-chr1-93486732-4	chr1	93486235	93487235	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 1 of 12)	B2_Mm1a|SINE|B2	7674.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	4.59358326555105	4.52129364884515	4.68472041526606	4.59761775945618	5.08361635198559	4.58649775208001	0.457371894961016	0.29410278854474	0.690744745095144
Merged-chr16-76373148-4	chr16	76372642	76373642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	-93.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	8.43327343354252	8.18716379724385	8.31201677577059	8.38889955590826	8.14093563883269	8.25047051980035	-0.0729774172332375	0.736374948472366	0.933137122599426
Merged-chr10-120114238-2	chr10	120113738	120114738	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1273.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	4.12338227437491	4.31913527201886	3.87487574091026	3.39578825816451	3.40921069178823	3.67888450395986	-2.17092032036295	0.000200015093482052	0.00501744223649521
Merged-chr13-5800496-2	chr13	5799996	5800996	+	741.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57596.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.25974095016313	2.99183417246272	2.99743132797231	3.00889289824466	2.79477500349382	3.07056733903997	-0.619468375932586	0.375343585093077	0.758646622209238
Merged-chr12-101958862-4	chr12	101958370	101959370	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-627.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	6.91288640906291	7.39141582073559	7.05020069377539	7.21430998046954	7.5527795470045	7.17297085273392	0.287782420797716	0.294646369674261	0.69149443316474
Merged-chr4-8841840-2	chr4	8841340	8842340	+	966.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 18 of 36)	L1MB7|LINE|L1	90516.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.52761429230232	5.48688048590597	5.74795362808604	5.63696614929378	5.83626794706092	5.95039338834164	0.417606256798046	0.195351941020909	0.583020169139918
Merged-chr3-65372874-4	chr3	65372377	65373377	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357358, intron 13 of 13)	intron (NM_001357358, intron 13 of 13)	19676.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.34101349391992	3.43233586986034	3.58972870958989	3.53460904398735	3.58101371723274	3.85025340119049	0.742681461605407	0.201035187892149	0.590480988179249
Merged-chr3-148918605-4	chr3	148918102	148919102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081298, intron 1 of 23)	URR1B|DNA|hAT-Charlie	36033.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.22935889032193	5.84954877270839	5.45570931245052	5.6078836855119	5.4115853051096	5.4887270461053	-0.717071875274136	0.0479769899789472	0.277689856856444
Merged-chr15-6519634-1	chr15	6519134	6520134	+	692.599976	f0_balb.idr	Intergenic	Intergenic	-60213.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	4.47062569573673	4.41438678526915	4.56057826905889	4.15300709290697	4.10586201643953	4.46768472104967	-0.632710373988224	0.167046857105091	0.542678908601116
Merged-chr1-191072696-3	chr1	191072213	191073213	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	9692.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	8.60689507947084	8.47277683442462	8.46805673376156	8.63067919364955	9.00227401299449	8.5506536542589	0.319300650918407	0.160527190062302	0.533208683746259
Merged-chr8-47990553-4	chr8	47990032	47991032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	19.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	7.08872020430502	7.15053880154465	7.00364923568308	7.06817856944305	6.95934713337036	7.03476161860637	-0.101966820277001	0.668540003030152	0.909204788456481
Merged-chr7-29307908-4	chr7	29307401	29308401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013874, intron 1 of 11)	CpG	3896.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	2.86066768778357	2.94375653453492	2.97664914493008	3.11354880916253	2.85772295995045	3.220471806377	0.646993992927582	0.349563519839893	0.737617765801176
Merged-chr11-54995360-3	chr11	54994879	54995879	+	886.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 14 of 24)	MIR3|SINE|MIR	-32439.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	3.94504420901503	4.11730951081025	4.09736791486485	4.24948906367886	4.15590766482389	4.11850126387281	0.350481199593196	0.461984053639989	0.815107818354545
Merged-chr6-71931238-3	chr6	71930731	71931731	+	790.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	22178.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	6.41667707870516	6.46359685504388	6.78706168052897	6.56158711287175	6.60592021954914	6.47400573712398	-0.00527167397032208	0.984662900836026	0.996713348248997
Merged-chr17-10764511-4	chr17	10764010	10765010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75681.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.30205135755165	4.31942949981307	3.74114052557214	4.32811673532389	3.9618710550859	4.23555352506521	0.0712481615970087	0.895566192220418	0.975665889379756
Merged-chr15-73176732-4	chr15	73176238	73177238	+	933.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	8209.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.04469982237058	4.63424254268974	4.67190552362212	4.93510140125111	4.91593463195184	4.51858961249413	0.0230188352589881	0.957550239076142	0.98996830630481
Merged-chr1-185350055-3	chr1	185349550	185350550	+	987.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12994.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	4.21373117060171	4.05078725748476	4.02477345608968	3.09111998511459	3.15795876439354	3.20696818723779	-4.1318403100365	1.8946777425472e-07	1.25319829572232e-05
Merged-chr14-47506825-4	chr14	47506330	47507330	+	924.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 2 of 5)	intron (NR_027414, intron 2 of 5)	34269.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	5.1463084229842	4.71543830464279	5.07966169385751	6.07753002151779	6.25093201122683	6.28024567805356	2.2935431100754	5.36781008658224e-11	7.56839112164146e-09
Merged-chr4-19872999-4	chr4	19872497	19873497	+	993.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49569.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	7.38745269815596	7.94367626126362	7.46703851633983	7.26586714312429	7.58479164254951	7.25511948064647	-0.358729313393056	0.192320362409549	0.579367163874643
Merged-chr16-32164128-4	chr16	32163623	32164623	+	842.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1471.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	7.0797445691061	7.52730231287235	7.29588558302553	7.40907812693428	7.61292842640309	7.80741654773153	0.4400379181258	0.0911071303057473	0.401699290355094
Merged-chr13-34726370-1	chr13	34725870	34726870	+	544.0	f0_balb.idr	Intergenic	Intergenic	-13272.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	3.4078316433797	3.36235943965869	3.00887632918707	3.13958631705105	3.00421457068564	3.20664325446614	-0.690355796677199	0.304570971101787	0.700973852740454
Merged-chr16-3956635-3	chr16	3956129	3957129	+	767.355591	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081280, intron 7 of 17)	RMER19B|LTR|ERVK	20003.0	NM_175547	268857.0	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	2.99803206627099	3.10412056701741	3.06620508086334	2.77098373219284	2.68282889392801	3.13787065008956	-0.892856194938882	0.224241423313238	0.6190426237005
Merged-chr15-76306352-2	chr15	76305852	76306852	+	686.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153122, exon 3 of 27)	exon (NM_153122, exon 3 of 27)	893.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	3.55912687337733	3.70027759616276	3.89224331182563	3.63546901417532	3.52540456437239	3.86678171536505	-0.144140748517625	0.797675322075627	0.951799370596145
Merged-chr1-180946998-2	chr1	180946498	180947498	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 2 of 22)	intron (NM_144794, intron 2 of 22)	4480.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	3.79216184531991	3.90660776314059	3.97676167097523	3.72360065078838	3.69046346606551	4.17312774698189	-0.0651707644002154	0.904623228275273	0.978142219404953
Merged-chr1-10231822-2	chr1	10231322	10232322	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001102430, intron 1 of 37)	intron (NM_001102430, intron 1 of 37)	848.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	3.85445806212824	3.8087179452614	3.76222328029597	4.26666529703186	3.86796818074948	4.03832585942666	0.772843383499863	0.137229110639327	0.495027571456897
Merged-chr18-40219413-4	chr18	40218926	40219926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-27.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	7.49678859470005	7.56905493983783	7.32469004068712	7.73155031852923	7.8228448957851	7.28681272105988	0.250545477404273	0.329798493398329	0.721504110160967
Merged-chr11-118208378-3	chr11	118207872	118208872	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4370.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.55484467117831	5.32041003617058	5.58629103279988	5.29115284524556	5.18204941113993	5.3339416930321	-0.437416829373154	0.203335380678911	0.593216589724442
Merged-chr9-57466311-4	chr9	57465807	57466807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1753.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	5.30757630390056	5.03209278667728	5.20060550294418	5.06253245056019	5.19651915014997	5.35657724002199	0.0432848213410105	0.90533564483405	0.978279198518346
Merged-chr9-44232687-4	chr9	44232120	44233120	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	MIRb|SINE|MIR	1426.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	6.30268157065956	6.2571233135442	6.47622313201173	6.91492445251151	7.00460020462541	6.72226252696904	0.878303728849242	0.000897332880635555	0.0165628381392909
Merged-chr2-68962240-2	chr2	68961740	68962740	+	766.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	100799.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	2.11227460186455	2.18461153693373	2.32658453850029	1.93457700622003	2.0473129778065	2.33833820269369	-0.677472752267312	0.48002444888343	1
Merged-chr4-150603610-3	chr4	150603135	150604135	+	787.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	48539.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.5041473975198	4.0262167516784	4.04484675919374	4.85112724097884	4.62095708898873	4.46248376114339	1.10334702225829	0.0245100754807796	0.184549795264984
Merged-chr5-113015303-6	chr5	113014879	113015879	+	905.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177078, exon 1 of 21)	exon (NM_177078, exon 1 of 21)	159.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	7.0089836161524	6.81340971580561	6.99610889461678	7.14662739766388	6.53596411620879	6.82913709647127	-0.125406830242185	0.660356513644599	0.905929432585967
Merged-chr7-19026826-2	chr7	19026326	19027326	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360713, intron 1 of 22)	(T)n|Simple_repeat|Simple_repeat	2449.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	2.65840920410954	2.86358275110511	2.73517109297277	2.77356658439565	2.60958722743004	3.04429683173198	0.29971193162684	0.692526465426045	0.91870248759071
Merged-chr14-77928183-4	chr14	77927674	77928674	+	910.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 2 of 11)	intron (NM_029495, intron 2 of 11)	23935.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	3.68822005569607	3.59440915044007	3.9134266476866	4.04929073247517	3.30205899008035	3.7871379229907	0.0486161290781789	0.937612922475308	0.986057836872162
Merged-chr11-49090312-1	chr11	49089812	49090812	+	549.0	f1_balb.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	3295.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	3.21442694935235	3.31659800934003	3.49562024842144	3.36305131816087	3.43466390441245	3.76224483796598	0.687783316423049	0.261496738292033	0.659232278973625
Merged-chr19-12004925-3	chr19	12004453	12005453	+	919.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A1|LTR|ERV1	31787.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.12439571654542	5.53597082702163	5.21699342401387	5.24533250943504	5.07082570854555	4.79511591546417	-0.515751255551984	0.187341901353904	0.572271506774537
Merged-chr2-173452139-3	chr2	173451711	173452711	+	866.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-70381.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	2.39928490123174	2.80033839566517	2.37211166031979	2.75778108402213	2.43979535326866	2.83884008631283	0.803064916221534	0.366392834479769	1
Merged-chr17-29376702-1	chr17	29376202	29377202	+	656.0	f1_c57bl6.idr	intron (NM_001159538, intron 13 of 15)	intron (NM_001159538, intron 13 of 15)	15788.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.57801943167085	2.58302539772321	3.10819275157254	2.73529553211993	2.53934329055479	3.23117352390447	0.416119341480321	0.62130680948346	0.890659217105386
Merged-chr8-84910139-4	chr8	84909641	84910641	+	923.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010062, intron 5 of 5)	intron (NM_010062, intron 5 of 5)	1517.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	6.22903758942441	6.20989577221541	5.46464608569159	5.62646985357963	5.79247224400067	5.20826638913232	-0.796823439309913	0.043500030986519	0.262064280351023
Merged-chr8-10706186-4	chr8	10705696	10706696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	176258.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.85195067649061	5.90894093740759	5.93741732443421	5.0579875336031	4.83206193821535	4.77561662178956	-1.98105303528319	2.42666169045896e-08	2.02119785725434e-06
Merged-chr8-94364145-3	chr8	94363648	94364648	+	920.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22281.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	4.94076465070956	4.9839168320038	4.98184061182863	4.82080308467031	4.89305849756674	4.93993160481304	-0.186294043337787	0.619385730920107	0.889749463061948
Merged-chr8-70605009-3	chr8	70604455	70605455	+	853.8666380000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	3359.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	2.94534684713031	2.73315063861687	3.05372070782804	3.00533694087913	3.17681905751105	3.18257512336654	0.982718974191751	0.158419246686418	0.530217958983285
Merged-chr15-81082522-2	chr15	81082022	81083022	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	22525.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	7.16473147073592	6.63117325757876	6.74899642684576	6.64511979689207	6.59560076474092	6.03316279218679	-0.643209910798666	0.0464624016538222	0.272755998081786
Merged-chr12-34847941-3	chr12	34847439	34848439	+	709.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69156.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.14323253479558	4.42861704076869	4.51895315313874	4.43321808498542	4.19774293839997	4.42181259676534	-0.048202199866523	0.917096317157722	0.981522312365153
Merged-chr4-43046772-2	chr4	43046272	43047272	+	791.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	-552.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	6.127928522107	5.75529779929624	5.73414331574478	5.61742711712856	5.71920929940045	5.68877798170702	-0.388459154991961	0.229994685022021	0.625752795713708
Merged-chr14-75121836-3	chr14	75121332	75122332	+	857.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027581, intron 5 of 9)	intron (NM_027581, intron 5 of 9)	9051.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	3.19924444157459	3.19168864091809	2.81333707623563	2.9950323869238	3.28371350858499	3.20384455187304	0.356067322445267	0.622804534702181	0.891249034616027
Merged-chr10-119040436-4	chr10	119039922	119040922	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10077.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	7.29780282981548	7.51055722469771	7.23943763435761	7.34756437129372	7.43924936133632	7.12123879876246	-0.0622854402162067	0.800110836340896	0.952408432552781
Merged-chr9-7835024-2	chr9	7834524	7835524	+	679.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291503, exon 2 of 8)	5' UTR (NM_001291503, exon 2 of 8)	1782.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	3.52349721246578	3.65416168383576	3.43279687195928	3.90586944637244	3.81419976387158	4.07371809728629	1.27169291387191	0.0231938522940358	0.178164619253411
Merged-chr3-86998782-4	chr3	86998294	86999294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007639, exon 2 of 6)	exon (NM_007639, exon 2 of 6)	546.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	6.85772231514666	7.06956647852027	6.91689181054496	6.50290262367422	6.86967783119278	6.6883785807775	-0.389002664458021	0.143031363825124	0.504872257292704
Merged-chr4-103025552-4	chr4	103025055	103026055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290648, intron 2 of 2)	intron (NM_001290648, intron 2 of 2)	1173.0	NM_011831	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	3.70425755801653	3.51896356264729	3.59860252976986	3.3731783657875	3.34870416356022	3.45281456561206	-0.823811152599061	0.155412873158049	0.52509823972611
Merged-chr6-108185484-4	chr6	108184963	108185963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145937, exon 1 of 9)	exon (NM_145937, exon 1 of 9)	120.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	6.94434000291221	7.20657081416206	6.59074893580222	7.17056958547087	7.03552267180764	6.1815511760281	-0.106529004160999	0.76530534049057	0.942137701159565
Merged-chr6-120152998-4	chr6	120152569	120153569	+	969.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	B1_Mm|SINE|Alu	-40754.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.51195536373222	5.68307656951569	5.76108239163666	5.06015038549455	5.41104837781772	5.19269774052179	-0.794715496626508	0.0243171513325324	0.183626602058023
Merged-chr12-55388852-3	chr12	55388435	55389435	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	4713.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.57205657914223	4.2642655460169	4.45031481801247	4.46564471073292	4.41522003894182	4.85739055244781	0.369004614818503	0.416936609269281	0.787748896096239
Merged-chr13-6461586-4	chr13	6461081	6462081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86576.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	4.04521720921506	4.02269421631413	4.2503234368507	3.60705043424661	3.49989093471737	3.96646219787042	-1.31259699560601	0.0174984856886152	0.147713705709475
Merged-chr19-10849087-1	chr19	10848587	10849587	+	649.0	f0_balb.idr	intron (NM_023044, intron 2 of 7)	B4|SINE|B4	6543.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	2.91402077257379	2.53825246236931	2.98751049312115	2.94039055369272	2.88825461716521	3.33167780774794	1.11484600950224	0.157310944624535	0.528495229716136
Merged-chr2-92455908-4	chr2	92455358	92456358	+	893.758301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	3936.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	4.04404371526226	3.80907384150134	4.14991052681468	3.80023330467058	3.80910414360069	3.99088930597973	-0.424403566132733	0.412117216679607	0.784314318706468
Merged-chr4-8536625-2	chr4	8536125	8537125	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	981.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	7.07560338805235	7.61265054424703	7.32159171963727	7.21388220398552	7.31585126529962	7.27699304463546	-0.132158666079539	0.611784018907771	0.886342611187799
Merged-chr19-5529546-4	chr19	5529052	5530052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19035.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	3.93695769852094	3.94192732858761	3.64068151092278	3.91303914518938	3.89961455084949	3.71327186959159	-0.017158529434174	0.974490738327258	0.994278808057859
Merged-chr15-98683364-4	chr15	98682872	98683872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5911.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	4.57347596127667	4.26842637937218	4.45294391977089	4.75078947826205	4.52290358574651	4.47711311456957	0.380875942446057	0.386118304931219	0.766927621424541
Merged-chr2-72997212-2	chr2	72996712	72997712	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16766.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	3.04158747826898	2.96180099973191	2.96553372906026	3.34261151953729	2.87765802269761	3.16025681510357	0.655207854577887	0.344884206138863	0.733373712840888
Merged-chr17-57274821-2	chr17	57274321	57275321	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-4279.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	5.95538748048481	5.7917711803505	5.98944007398381	5.55959761913565	5.75293558841987	5.8416288411854	-0.341684381121954	0.27252003467697	0.669758479939364
Merged-chr1-177703079-4	chr1	177702614	177703614	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26700.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.23167918554788	3.92831428330585	3.81193822705719	4.46777239588177	4.24920538827591	4.2906933622232	0.906227801964183	0.0721173274650288	0.352735632712798
Merged-chr1-178407465-2	chr1	178406965	178407965	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	B1_Mus2|SINE|Alu	1447.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	3.90527725817816	4.06235147007139	4.15036861444893	3.67885023420246	3.76709964463416	4.03923448239516	-0.647181389505922	0.215823229948353	0.609232929845416
Merged-chr15-8992362-4	chr15	8991860	8992860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	MIRb|SINE|MIR	24411.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	5.54373186078942	5.42670896805283	5.4181762413694	5.25404023806282	5.81911335462598	5.42040724442556	0.131411226736193	0.71581871170514	0.92647595514209
Merged-chr5-120522009-2	chr5	120521509	120522509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	10817.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	2.72074288863616	2.81669870530662	2.84003062331969	3.07971139062807	2.94157989600417	3.03456515553354	1.11621304417925	0.11086652337997	0.444841551070303
Merged-chr8-33931773-4	chr8	33931271	33932271	+	803.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1908.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	3.4426597664859	3.23762949281488	3.39944974693479	3.81828380108493	3.67384623301645	3.58532967224562	1.23381504811279	0.0350681527351105	0.229824797754097
Merged-chr2-166694741-4	chr2	166694231	166695231	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	ORR1B1|LTR|ERVL-MaLR	19101.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.27987462105423	3.87629113608676	4.20956092004995	4.87152669420428	4.44954852964496	4.4183125003052	1.2172442927753	0.0130402636685801	0.121167421477969
Merged-chr12-110601997-4	chr12	110601466	110602466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030238, intron 1 of 76)	CpG	571.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	8.31816609023556	8.79485821996329	8.2928365983909	8.23907070099905	8.53273853999208	8.60886347608962	-0.0361709150100555	0.885557051321937	0.973636976161493
Merged-chr10-96633013-3	chr10	96632550	96633550	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16049.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.84927393287343	4.64148921904606	4.7471182108411	5.17030566430805	5.4401327881864	5.04478658765766	1.05804282165331	0.00641985033261634	0.0734070230144758
Merged-chr11-118107217-4	chr11	118106737	118107737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167746, intron 18 of 80)	intron (NM_001167746, intron 18 of 80)	21982.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.99556314639294	7.13870883764293	7.17292022825298	7.05805364061412	6.97922348520183	6.50868827787233	-0.33564603668572	0.221135063739855	0.615632797217854
Merged-chr7-141369081-4	chr7	141368573	141369573	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3963.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	5.91311520697442	6.03046916547254	6.24837411630776	6.30886832910556	6.09982300489579	6.3647450553028	0.327475821460399	0.268193550498214	0.665310623989488
Merged-chr1-93507170-3	chr1	93506649	93507649	+	883.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159719, intron 12 of 12)	intron (NM_001159719, intron 12 of 12)	-4955.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	2.51134997342357	2.44217738525027	2.3694257268825	2.50288862216492	2.58091503402872	2.63653636764582	0.772465191698986	0.33298304546888	1
Merged-chr2-27680344-2	chr2	27679844	27680844	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3143.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.22020135419952	7.35206501805168	7.23990857200251	7.05581056342132	7.23980738676913	7.26261142881046	-0.127169509601565	0.590219923062989	0.877133359617561
Merged-chr12-36119470-4	chr12	36118936	36119936	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025840, intron 5 of 11)	intron (NM_025840, intron 5 of 11)	29057.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	3.35540172673015	3.17471991373216	3.45437056402751	3.41674223280487	3.37947226469671	3.91050152911651	0.93899063891369	0.13660791280701	0.493740502092718
Merged-chr17-35381024-3	chr17	35380524	35381524	+	849.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	1407.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	2.79058438682177	2.5567096525025	2.95411293175699	2.70393922593338	2.62957202530316	2.53475292033685	-0.790490015751258	0.314435705880026	0.708751624403771
Merged-chr12-91769621-4	chr12	91769134	91770134	+	901.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	16802.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.23251252469743	3.41993634113785	3.54736070404668	3.70556017520803	3.58169271859011	3.50977351126464	0.744782375286394	0.206181679682559	0.596809057329073
Merged-chr9-105122963-4	chr9	105122467	105123467	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8838.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	6.08272757167437	5.99483725203648	5.99955660270657	5.55002692754301	5.92724353265747	5.7421293373388	-0.475802189679259	0.127946792282723	0.478368729180139
Merged-chr18-4255742-3	chr18	4255238	4256238	+	756.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89906.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.29631743512213	4.17077876537146	4.5363390333462	4.16368761942319	4.12819529455914	4.31859420360454	-0.362791112447597	0.439302565200371	0.801067055524026
Merged-chr4-124805205-4	chr4	124804692	124805692	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 2 of 10)	intron (NM_008636, intron 2 of 10)	2643.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	3.44305322637412	3.38663434356632	3.79677661153243	3.50578973406588	3.72104581025154	3.56356321827007	0.207840577033079	0.724179613671026	0.929235307407624
Merged-chr5-112281931-4	chr5	112281388	112282388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	MER44B|DNA|TcMar-Tigger	5197.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	7.05643115864771	7.21543133722006	6.99022971987355	6.74358292688371	6.73277064123612	6.70642063591065	-0.565190385201868	0.0219041361478547	0.171587211503549
Merged-chr8-80879881-4	chr8	80879381	80880381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301298, exon 1 of 11)	5' UTR (NM_001301298, exon 1 of 11)	598.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	6.31220056635477	6.54084207974056	6.70167175419207	6.07414085962422	5.96348874561855	6.42140087230354	-0.606287411941791	0.0456425045066942	0.269827461100747
Merged-chr1-75209265-7	chr1	75208770	75209770	+	937.392883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029010, intron 2 of 16)	intron (NM_029010, intron 2 of 16)	1508.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	5.85790639547454	5.88359661346154	6.07325927775906	5.65529252023939	5.66787156639164	5.76475859189268	-0.433833813955883	0.156167984595276	0.526455928142522
Merged-chr6-122810336-4	chr6	122809831	122810831	+	912.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-9853.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	7.03510133614559	7.23368433579158	6.83035199983378	7.05867199228001	7.32517698066843	6.79362818398552	0.0577214578115972	0.836341485415704	0.961989249633258
Merged-chr5-31001187-2	chr5	31000693	31001693	+	712.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	32516.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	2.72265251810985	2.78764920734288	2.70804207005754	3.04338579654155	3.09385189529652	3.0929433244187	1.67900812105463	0.0195910930881561	0.159211435685854
Merged-chr7-46789980-1	chr7	46789480	46790480	+	544.0	f1_balb.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5901.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	4.85868416603321	4.86002131868588	5.2167985547761	5.09692389593103	4.78121864577965	5.18809337301694	0.0964795533195472	0.80960692388341	0.954749848816598
Merged-chr7-16098506-4	chr7	16097983	16098983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-97.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	8.39048311243897	8.83281349563371	8.14825307269023	8.3691906985851	8.46111867484085	8.18298605874877	-0.209437244137752	0.419460664861486	0.789025513211189
Merged-chr5-122642233-2	chr5	122641733	122642733	+	552.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-1678.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	2.04164435957166	2.09205098349248	2.20688488731541	2.26368631021149	2.05738308512044	2.34659678645103	0.804110476658317	0.371859008049033	1
Merged-chr8-60887112-4	chr8	60886663	60887663	+	855.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3230.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	3.63297349785601	3.68477269997356	3.89443155633027	3.33822271520261	3.61844992386289	3.67202184101507	-0.641669907425369	0.266622980833833	0.664166899200562
Merged-chr4-129795542-4	chr4	129795035	129796035	+	916.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24944.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.69595203384641	6.01607855237469	5.56731647326329	5.2354596872135	5.33323517507304	5.10729109352872	-1.03805304804473	0.00324254323424587	0.044706799906401
Merged-chr1-151344429-4	chr1	151343910	151344910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-76.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	8.07897620760326	8.02384991744895	7.95945947753534	8.01236497073081	8.22033568740252	7.81219389356435	0.0149627412638412	0.947635819878386	0.988008807662239
Merged-chr14-31419431-3	chr14	31418919	31419919	+	885.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-1742.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.70531699532927	4.52017635793331	4.81677606847167	4.79899240393314	4.64748540657011	4.77058269457106	0.135950197151193	0.739055725941674	0.934159689508642
Merged-chr3-136708461-4	chr3	136707969	136708969	+	930.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	38403.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	5.33384086424057	5.39815665306617	5.61025647372575	5.76238285506964	5.76984535052137	5.59000311033333	0.5130730809076	0.115485552293898	0.453676494748627
Merged-chr1-144003472-4	chr1	144002929	144003929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009061, intron 1 of 4)	intron (NM_009061, intron 1 of 4)	720.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	7.32596220772221	7.0632508710904	6.99700042729519	7.31920444808104	7.27018853470703	7.33886153637995	0.24679605820188	0.310773098578333	0.706023261795061
Merged-chr5-143475564-5	chr5	143474983	143475983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 4 of 14)	intron (NM_144915, intron 4 of 14)	10990.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	7.21865253367586	7.22452703835714	6.97817388566922	6.69790131259743	6.76228450544354	7.00926885736363	-0.503169334237949	0.0486421451461006	0.279981710937793
Merged-chr3-104817936-6	chr3	104817454	104818454	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008619, exon 1 of 20)	exon (NM_008619, exon 1 of 20)	351.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	7.25336543811073	7.22365294616103	6.84163402399719	7.40250701522192	7.44908961198976	7.03431490989003	0.28000528740958	0.298320093644792	0.69500092474273
Merged-chr5-5333137-1	chr5	5332637	5333637	+	596.0	f0_balb.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	47114.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.21137217244282	2.90224138645859	3.20567177770968	3.35243681183488	3.06170001273829	3.49313649025508	0.816459289333432	0.229197670473111	0.624666877324814
Merged-chr2-128819180-4	chr2	128818655	128819655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	852.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	7.49271895861865	7.87050348705814	7.35836645752987	7.27718580635804	7.48138330183002	7.35950954372851	-0.325890927283227	0.204712526330482	0.595355628636074
Merged-chr11-75533133-4	chr11	75532637	75533637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1025.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	7.1095209562483	6.97080225742463	7.14797968274537	6.94088163322647	7.3409891114826	6.89721641267196	0.0185784061148803	0.944145699136225	0.987585801449778
Merged-chr7-84779488-6	chr7	84779031	84780031	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-74040.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	3.912678662784	4.07634886215554	3.94351043693806	3.60759047008817	3.5972995618216	3.47419491233372	-1.38694198135899	0.0119356729345343	0.113827332210513
Merged-chr5-105517089-1	chr5	105516589	105517589	+	541.0	f1_balb.idr	Intergenic	Intergenic	-2382.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	2.82710305575913	2.77349421330629	2.76380705652217	2.37431636461956	2.55344730793261	2.71475033659343	-1.35709092186391	0.0961737086417332	1
Merged-chr2-27769349-3	chr2	27768839	27769839	+	781.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58756.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.11379795836334	3.00659949611424	3.04237428143272	2.95299184559363	3.03740263679767	2.86900590976951	-0.442899122767129	0.515062592418654	0.84337265078831
Merged-chr2-91098310-4	chr2	91097803	91098803	+	897.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1625.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.496454190138	7.53698856966174	7.39946755337657	7.50428164365354	7.71961675724481	7.33337086825219	0.0823140392308921	0.730567428925038	0.930911472656386
Merged-chr7-134693356-4	chr7	134692846	134693846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	MTD|LTR|ERVL-MaLR	22659.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.74287623813569	5.37313573591739	5.49768652414199	5.61574834427989	5.58374508228209	5.64486600486033	0.117579620588423	0.723448181364202	0.929080239793919
Merged-chr11-51856483-9	chr11	51856034	51857034	+	989.858032	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 1 of 12)	CpG	947.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	7.76157535941572	7.97117375364458	7.94004879650174	7.9020419746963	7.88108937442589	7.70660583645184	-0.0805554497841969	0.715822249195976	0.92647595514209
Merged-chr17-88443265-2	chr17	88442765	88443765	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	B1_Mus1|SINE|Alu	2561.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	2.87279760461389	2.86380451205584	3.47055364709208	2.96034552885663	2.86899630540353	3.07012109000318	-0.569419594144632	0.438815145949656	0.80080572256114
Merged-chr7-99139416-3	chr7	99138918	99139918	+	858.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1726.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.2742327022617	6.04101829782212	6.1348711497737	6.32072559527963	6.48761243540049	6.41545898185549	0.427590381532377	0.12587615018824	0.474619480916398
Merged-chr13-23453564-4	chr13	23453056	23454056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12345.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	5.11473366436785	5.01044352166124	5.41531081713154	5.43345855915295	5.42813774112852	5.44928241063093	0.516737055525514	0.143990935565492	0.506588698903881
Merged-chr2-22724330-4	chr2	22723834	22724834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-49993.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.2920326077361	5.46636772498736	5.57976253469725	5.62212427711748	5.55801344050939	5.58733311085645	0.274701865396307	0.403364945166059	0.77875989555314
Merged-chr6-86469869-2	chr6	86469369	86470369	+	713.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_131125)	TTS (NR_131125)	10961.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	2.94288509896798	3.01199704732169	3.0486590046194	3.00129728439642	2.99755839289734	3.06212789696106	0.0871920127099638	0.895205390348177	0.975665889379756
Merged-chr16-17508876-4	chr16	17508377	17509377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331226)	promoter-TSS (NM_001331226)	194.0	NM_025808	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	6.6557047459234	7.12832117399315	6.77742999534864	6.78267783869221	7.07382335192937	7.02163693197326	0.139688663204956	0.61458036793387	0.887509542539593
Merged-chr10-25297879-2	chr10	25297394	25298394	+	973.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	1269.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.19998187389526	6.28198066491159	5.9952525130239	5.94904412417002	6.14915014875833	5.83087652301174	-0.303668431323149	0.315249233582706	0.709642964607719
Merged-chr18-9486131-4	chr18	9485661	9486661	+	982.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36007.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.98894743688465	6.25311726991629	5.09222854517997	5.86816201646436	5.89952324818094	4.94045309346207	-0.408640279361971	0.65126253511349	0.902764639607565
Merged-chr18-53244021-6	chr18	53243630	53244630	+	884.690735	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1532.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.93848772378203	6.67755881011166	6.60280711236105	6.82437466654614	6.96542003435495	7.02243173678816	0.28460204909888	0.276095609539976	0.673410731557322
Merged-chr6-94158648-3	chr6	94158150	94159150	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78792.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	4.91484862010282	4.95163719106497	4.23100486046097	3.51965754799993	3.7225901193629	3.68302124963898	-3.31918769294044	6.98932863423375e-08	5.16949383997619e-06
Merged-chr8-70539468-4	chr8	70538961	70539961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-214.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	8.3510145168809	8.38770065434549	8.2098698191513	8.22263269916779	8.41757837982741	8.0412536730845	-0.109078490346571	0.624285087046539	0.891935778467452
Merged-chr7-116462523-4	chr7	116461969	116462969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER76|LTR|ERVL	-19011.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.02433283500194	6.13058693295822	6.07775341643064	5.62047111799135	5.32471509533702	5.76800471328176	-0.918715121347989	0.00409047417654386	0.052826350346401
Merged-chr5-72182944-4	chr5	72182434	72183434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14745.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	4.50043885934454	4.44140369120587	4.66118520754617	4.24720157186895	4.01599715228396	4.2311694147632	-0.986917943627996	0.031210663854472	0.213939154542002
Merged-chr4-146480753-2	chr4	146480253	146481253	+	880.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21247.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.06448612915249	2.89502882451393	2.86006216070916	2.90969016990605	3.04241658269139	3.28146172566305	0.620110570422177	0.374516749299055	0.758106266771134
Merged-chr11-104444305-2	chr11	104443805	104444805	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	MT2B2|LTR|ERVL	-2014.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	2.42215017381141	2.54960178134619	2.70176334477035	2.5200371366389	2.44348459319219	2.53011331131847	-0.370662700268664	0.639645245669115	1
Merged-chr16-11843661-4	chr16	11843147	11844147	+	968.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-57717.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	2.5181757203864	2.37861027759086	2.47972482074104	2.63763312017214	2.37727464873377	2.95797989777826	1.26989351218944	0.134299586315897	0.489993860307513
Merged-chr7-140940795-2	chr7	140940295	140941295	+	966.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145387)	promoter-TSS (NM_145387)	-596.0	NR_153832	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	5.90946864296358	5.60933440936861	5.67017605992152	5.69791773889367	5.56820734755669	5.40932361339597	-0.313847305053337	0.341578422321293	0.730925996258459
Merged-chr2-91199811-2	chr2	91199311	91200311	+	811.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3101.0	NM_001357067	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	5.01144776665339	5.14392736983614	5.35711047345611	5.29814557708931	5.45526313903193	5.58612184118749	0.556982495569313	0.117241414850056	0.457311976431135
Merged-chr11-80052732-2	chr11	80052232	80053232	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 6 of 7)	ID_B1|SINE|B4	28259.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	4.01068832679214	3.97854200623637	4.0332373107341	4.00389087735569	3.96211364317501	4.1476729640743	0.0820799883561499	0.866154116280101	0.968773714377969
Merged-chr11-80080491-2	chr11	80079991	80080991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	500.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	7.44092780918719	7.47062764757445	7.56532806265422	7.58628564402637	7.50632594250129	7.53525373771528	0.0763819469806948	0.729614157313544	0.930635866770147
Merged-chr2-27359124-2	chr2	27358624	27359624	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	68484.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.08542383315701	3.06600830939709	3.33305943428199	3.35018502089759	3.05749271223629	3.05901867819738	0.00980729478182953	0.988194869430671	0.99731652667245
Merged-chr10-19008027-4	chr10	19007543	19008543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 2 of 7)	intron (NM_001166402, intron 2 of 7)	3920.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.02051522930561	5.76731295804656	5.35622226343253	5.73936535067886	5.62454243601882	5.89983490743326	-0.00779438563362566	0.982314416547839	0.995992226862322
Merged-chr1-136130360-2	chr1	136129860	136130860	+	816.700012	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046167, exon 2 of 4)	non-coding (NR_046167, exon 2 of 4)	823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	3.82865692399748	3.41057815685672	3.9428228094261	3.98499014072789	4.05393110098448	4.14880499379592	0.997857377453059	0.0736901032940474	0.35673692560217
Merged-chr10-7727293-3	chr10	7726807	7727807	+	870.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011835, intron 1 of 10)	PB1D10|SINE|Alu	1307.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	4.32240249066547	4.08018032512923	4.4400306809863	4.81067947410329	4.50334684229936	4.37550103386383	0.758936550484952	0.101387272483631	0.424664882786896
Merged-chr11-96411024-4	chr11	96410514	96411514	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45256.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	5.55553804391045	5.30712059172774	5.11027681463809	4.44019715151013	4.34084244624141	4.40160269896898	-2.18929360700345	1.51268942677196e-07	1.02749274957422e-05
Merged-chr11-90252909-2	chr11	90252409	90253409	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	3433.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	3.20526455188711	3.17935832234746	3.49471863865514	3.08610582951439	3.20954941394028	3.24580627016227	-0.462080310464862	0.470428864693537	0.819495618343931
Merged-chr12-117466139-4	chr12	117465636	117466636	+	891.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50343.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.17912321151179	4.03132480676021	4.07204510633312	4.42245388796492	4.73085934056124	4.33641404868126	1.12263234544348	0.0167439281000959	0.143539293824415
Merged-chr5-96161653-6	chr5	96161154	96162154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285511)	promoter-TSS (NM_001285511)	101.0	NM_178854	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	7.63454477286149	7.50125008756024	7.59130571487473	7.49801138483469	7.09985608229596	7.09351828285635	-0.485236335911501	0.05193317569563	0.290954462919605
Merged-chr12-79139291-2	chr12	79138791	79139791	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	8503.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	6.36886749755256	6.43716316285045	6.36233445441672	5.55445686611526	5.55970938758168	5.97339268840206	-1.20779380931344	7.72201504895812e-05	0.00228021193040196
Merged-chr10-128376450-2	chr10	128375950	128376950	+	915.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-674.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	6.55210106031231	6.57734853434049	6.65500835973169	6.84467830102693	6.55634131211204	6.85018707673698	0.248992164316442	0.34572615915303	0.734152876156979
Merged-chr3-116184594-4	chr3	116184105	116185105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54917.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	7.04252151606977	7.30724885640886	7.24834914628049	7.12050451656909	7.70156997993045	7.09451356360624	0.217533689815302	0.444675956411577	0.804462724072661
Merged-chr2-84624651-2	chr2	84624151	84625151	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	intron (NM_001355064, intron 1 of 18)	24829.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.37567815968674	7.13396954159106	7.44806891167637	7.1539520209899	7.30931146170824	7.26962983709586	-0.110202747167541	0.648704552259931	0.901893237722341
Merged-chr17-34285756-5	chr17	34285234	34286234	+	906.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	2037.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	3.49893626917391	3.53555963804025	3.54332611190149	4.04699392143409	4.50607122043515	3.6798245822733	1.94639384429711	0.00106314365765266	0.01888600714474
Merged-chr14-36864254-4	chr14	36863737	36864737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55298.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.66408781866051	4.92209547787345	4.73140190594552	4.59062764554426	4.35329363948961	4.16894945251969	-0.953479080125128	0.0329139873373153	0.221059573683375
Merged-chr3-89087635-4	chr3	89087164	89088164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028188, intron 9 of 10)	intron (NM_028188, intron 9 of 10)	2367.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	5.82980959741808	5.59450663591435	5.70316480617337	5.70453089716283	5.7356096536936	5.38320897042465	-0.153626620529424	0.641901385971546	0.899212233198401
Merged-chr7-30878153-4	chr7	30877671	30878671	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 3 of 15)	PB1D7|SINE|Alu	857.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	5.93451093858441	6.34144280690745	6.13521321720784	6.35522478245986	5.71940144338184	6.31569035277313	0.00691467023695497	0.983833082883804	0.996443902142547
Merged-chr16-56647020-4	chr16	56646519	56647519	+	851.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014399, intron 12 of 27)	intron (NM_001014399, intron 12 of 27)	70431.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	2.94944992294529	2.98144473963493	2.81467080428366	2.64295319623103	2.49592260035845	2.50046744134728	-2.30136600411241	0.00570808704518769	0.0672104915834518
Merged-chr15-73618601-2	chr15	73618101	73619101	+	850.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-1277.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	7.2824072449452	7.29306061863519	7.01448943473188	7.37393956393622	7.72013858760456	7.15389303153724	0.354474027045638	0.188068931433516	0.573505514731689
Merged-chr13-115089429-1	chr13	115088929	115089929	+	629.0	f0_balb.idr	exon (NM_134058, exon 1 of 2)	exon (NM_134058, exon 1 of 2)	729.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	6.29994993924779	6.51127257366201	5.42518949930261	6.30878125192115	6.13664503749984	5.41977352465054	-0.250455261944588	0.736028628719787	0.933046642264646
Merged-chr16-36675528-4	chr16	36675017	36676017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9440.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.26077216163836	4.24424719622933	4.41965153101084	4.58424585082459	4.35221302034045	4.48631099725197	0.443543452211089	0.316991187009578	0.710910535515415
Merged-chr19-29364268-4	chr19	29363766	29364766	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2395.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	3.39863027560756	3.37090861013655	3.4974098246796	3.53579251310015	3.60345039251674	3.62084589406375	0.616464426213791	0.278588573115628	0.675825014338344
Merged-chr15-76294807-4	chr15	76294287	76295287	+	908.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001195537, exon 1 of 7)	exon (NM_001195537, exon 1 of 7)	353.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	5.30282696816181	5.84374929726814	5.81563894332171	5.43324222905584	5.24309294919633	5.62911638808417	-0.452594878595726	0.217163889443489	0.610881487086205
Merged-chr8-95633475-4	chr8	95632984	95633984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030198)	promoter-TSS (NM_030198)	-75.0	NM_030198	78833.0	Mm.35546	NM_030198	ENSMUSG00000031669	Gins3	2700085M18Rik|AI616142	GINS complex subunit 3 (Psf3 homolog)	protein-coding	3.67569718715433	3.45609894320981	3.76658632326052	3.48051501997314	3.47875435208882	3.68739897843392	-0.307972187637177	0.590720052351584	0.877301111216348
Merged-chr9-57523902-4	chr9	57523362	57524362	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2630.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	5.63584804978225	5.69316954333817	6.02740633794599	6.3710861725316	6.49094876304959	6.31578442329738	1.0562899741766	0.000402383859141423	0.00882719645437373
Merged-chr4-122835053-2	chr4	122834553	122835553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1174.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.14433193257262	3.17179285681761	2.84554712359004	3.11345510686525	3.47020913974708	3.17885830866345	0.847484257428997	0.235331133000231	0.631536893333007
Merged-chr3-89419112-4	chr3	89418676	89419676	+	811.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	625.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	6.64172164529753	6.51152509593293	6.86075222117785	6.92346247933517	6.83602069073075	6.45977607450692	0.145204346115227	0.607024878309704	0.884421748807457
Merged-chr8-64847414-3	chr8	64846916	64847916	+	791.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178633, intron 1 of 14)	intron (NM_178633, intron 1 of 14)	2508.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	2.839024242007	2.90952777494448	3.10309906787695	2.89483617322277	2.82281009839744	2.69062698634717	-0.702265569724085	0.333539141506294	0.724468518545896
Merged-chr4-11006856-4	chr4	11006304	11007304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	815.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	7.65834490467799	7.81135415140305	7.47184940620715	8.08159900030497	8.06723210077335	7.95283405699146	0.536483423369329	0.0178037950773082	0.149547565192071
Merged-chr11-29704765-2	chr11	29704265	29705265	+	789.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194051, intron 1 of 8)	MLT1A|LTR|ERVL-MaLR	10991.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.22840498536848	6.35500979948752	6.30546427222113	6.37413237468066	6.51072768933693	6.5301760610415	0.287900133543789	0.284586840667631	0.682326259254607
Merged-chr9-44468156-2	chr9	44467656	44468656	+	743.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13389.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	3.80389365572922	3.43481782323969	3.17457285168761	3.40294850341221	3.33619740664902	3.75444778138139	0.0215497273592204	0.974236713502603	0.994260005145451
Merged-chr1-85604362-1	chr1	85603862	85604862	+	860.0	f1_balb.idr	promoter-TSS (NM_175397)	promoter-TSS (NM_175397)	-471.0	NM_175397	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	3.08814996404289	3.31974341676884	3.28087357956469	3.03014253037613	3.06081134292561	3.18444597957586	-0.623400562333721	0.337016610582482	0.726949528325002
Merged-chr4-59783068-2	chr4	59782568	59783568	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013577, intron 1 of 4)	B4A|SINE|B4	787.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	6.49585953074174	6.80030736723548	6.46511350431612	6.4639143281201	6.64853601822652	6.10408993920556	-0.260714072401451	0.388532443873316	0.768384455716378
Merged-chr2-153144159-2	chr2	153143659	153144659	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	intron (NM_001172117, intron 10 of 12)	-17142.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.76632965891456	3.43203527977384	4.02981814949928	4.01031374247283	3.8352584451872	4.22685233386039	0.835050073635895	0.144968434974768	0.507853382341718
Merged-chr3-109267164-4	chr3	109266674	109267674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73509.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.7854471743384	5.0204198345326	4.89815549276889	4.70855683855168	4.38343129677312	4.57353651540892	-0.81928946303403	0.0484098068644568	0.279049754733476
Merged-chr14-8101252-2	chr14	8100752	8101752	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	MT2C_Mm|LTR|ERVL	3041.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	3.97624997513336	3.68811189400205	3.6521226368473	3.75086002128132	3.86075297645592	4.24701515118831	0.549045970228314	0.325113159915531	0.717970213571373
Merged-chr5-135395881-2	chr5	135395381	135396381	+	900.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1335.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	2.68950938116911	2.64860233004455	2.92943379836729	2.77628760062638	2.62881867688687	2.70231075648247	-0.284384446148959	0.702581150657972	0.921908665861083
Merged-chr10-94578157-4	chr10	94577630	94578630	+	979.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	1867.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.06768374266043	4.93154560549104	4.72119846917428	4.59424805422923	4.10132410187415	4.62637468421918	-1.11662826663081	0.0139733428778988	0.126586163765291
Merged-chr2-167799163-2	chr2	167798663	167799663	+	988.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107986.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.49252298702754	6.01820987617995	6.66505251861106	6.3760792197443	6.39538984496955	6.38701397204003	-0.0409216343124103	0.894090956937921	0.975337673545585
Merged-chr17-25860663-3	chr17	25860157	25861157	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163766, exon 3 of 41)	exon (NM_001163766, exon 3 of 41)	858.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	4.83320115543894	4.60011340166099	4.28497816432188	4.46791764687021	4.42238865750105	4.1513288690457	-0.598235865804528	0.206215239940072	0.596809057329073
Merged-chr16-91596541-4	chr16	91596000	91597000	+	852.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1180.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	4.31481074724046	4.03896426430102	3.99940731994359	4.40315287964486	4.47869273728344	4.36018539892943	0.766569818962967	0.103417307233897	0.428607227191219
Merged-chr6-115362203-3	chr6	115361697	115362697	+	866.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	-152.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.25818760641976	5.66514565696238	4.96879007482406	5.22749385241867	4.92103134973512	4.49900679638757	-0.851465728559808	0.0626299399583183	0.325483233030526
Merged-chr11-82890606-4	chr11	82890047	82891047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102717)	promoter-TSS (NR_102717)	77.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	5.81976812434098	6.30017157991236	6.23995569100954	6.07066451405824	5.89647583968925	5.74776309435693	-0.378090387574629	0.241728081845415	0.638803036215977
Merged-chr11-106157269-2	chr11	106156769	106157769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	2658.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.07698152446308	2.93208694181178	3.06631103081089	2.98295174726657	3.06692930793284	3.51145499512518	0.754921250139139	0.274315500122247	0.671721462492876
Merged-chr17-15813910-4	chr17	15813422	15814422	+	796.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	12664.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.70412886449394	4.83308524346084	5.11808472048003	4.95981550715269	5.23797037807993	5.41778142658355	0.697272869869967	0.0782266192362228	0.369330488731708
Merged-chr16-90281142-4	chr16	90280653	90281653	+	757.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3333.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.72179314163336	4.40720793200706	4.73979302358502	4.66006089321494	4.81679564705317	4.52096208927322	0.12966622690586	0.762346574535065	0.941552504399722
Merged-chr1-180312488-4	chr1	180311894	180312894	+	880.1726070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18082.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	6.75882225191415	6.66186944770414	6.51012363972446	6.67349461449035	6.95196974542649	6.89080861542682	0.300232579368187	0.253427543505907	0.650876151940893
Merged-chr1-170702518-4	chr1	170702009	170703009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57977.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	3.42237518432867	3.02593584918869	3.12638510420492	3.15916602564945	2.75946708568387	3.14039878421186	-0.764469293933301	0.29122520779307	0.688964718811719
Merged-chr5-31195988-4	chr5	31195477	31196477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153680, exon 6 of 15)	exon (NM_153680, exon 6 of 15)	2673.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	6.57887671523212	6.35829508871524	6.5139343223852	6.26593050030835	6.6224966717257	6.83673410492456	0.169619965669526	0.562254288825452	0.865650011371787
Merged-chr1-191131491-3	chr1	191131007	191132007	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33093.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	4.0515893070396	3.90685172983761	4.22367075406321	3.94031443741675	3.72960749252194	4.02348869518841	-0.499010470460095	0.332284116970349	0.723518174479399
Merged-chr13-112416644-4	chr13	112416165	112417165	+	690.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47405.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.83423023445345	5.59178260256029	5.50601073871024	5.95257168020037	6.02469148967206	6.10130473065016	0.649230198003324	0.0379724089823635	0.241081047352701
Merged-chr17-29378972-2	chr17	29378474	29379474	+	699.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013710, exon 16 of 16)	exon (NM_013710, exon 16 of 16)	18060.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.91321179639715	2.79861504332923	3.16095373282231	3.09387655641509	2.93650451753838	3.5397669921273	1.08158521045374	0.13619569730506	0.493146752362964
Merged-chr13-12395844-3	chr13	12395324	12396324	+	936.7333369999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144835, exon 2 of 45)	exon (NM_144835, exon 2 of 45)	449.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	6.33601772190235	6.39446072214814	6.54074449560726	6.59817532048286	6.8376864122253	6.35889830899628	0.329718977949714	0.245758766253408	0.642821080898342
Merged-chr13-45389669-4	chr13	45389170	45390170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153789)	promoter-TSS (NM_153789)	-72.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	7.19136669480084	7.07893684642637	7.15632517611041	7.23338294951728	7.01179488631471	7.07521729928261	-0.0502780912400646	0.833728132564367	0.961104751385188
Merged-chr15-99033320-2	chr15	99032820	99033820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	3429.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.19562263259492	5.7244848809126	6.11457793833453	5.9333086665794	5.97942444040841	6.02294173748776	-0.0803315787817691	0.798152600900079	0.951930937621884
Merged-chr15-97174825-3	chr15	97174289	97175289	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7545.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	6.39774506358793	6.50822709994735	6.86585177145008	6.36245745366166	6.23767792856465	6.49931532278162	-0.376777226750853	0.194216867123598	0.581402529136523
Merged-chr11-70375720-2	chr11	70375220	70376220	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23689.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	6.13854383422421	5.90465530760447	6.47577919700845	6.2431949727783	6.76431084771353	6.10109411682743	0.379586077040322	0.268074077897445	0.665240807694185
Merged-chr3-133545993-1	chr3	133545493	133546493	+	553.0	f0_balb.idr	Intergenic	Intergenic	-1603.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.33663390352565	5.05050026521808	5.26719954895224	5.04256344089834	5.0274786848122	5.47199066397247	-0.0760015729054412	0.841732832422528	0.962988975342446
Merged-chr12-111759389-2	chr12	111758889	111759889	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	521.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	6.71201057394344	7.05018849652622	6.95664230691024	7.08103785854942	6.86342404512701	6.66405910324056	-0.04226621717005	0.876197212883183	0.971233550336823
Merged-chr10-61202081-4	chr10	61201559	61202559	+	982.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081127, intron 19 of 21)	intron (NM_001081127, intron 19 of 21)	26797.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	3.2416296849777	3.19011250691779	3.41296916355983	3.32726647235963	3.53173779568648	3.25798131420874	0.417262740035823	0.501012797950909	0.835364873648088
Merged-chr2-119993355-3	chr2	119992848	119993848	+	825.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355293, intron 1 of 30)	MTD|LTR|ERVL-MaLR	20649.0	NM_011941	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	4.76857319287989	5.1014769139732	4.96470556744713	4.50737632792723	4.5987630198042	4.43104581023839	-1.00413926107587	0.0161555555465225	0.139773881268939
Merged-chr1-172347605-4	chr1	172347097	172348097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	Charlie1b|DNA|hAT-Charlie	6387.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	7.18608138489032	7.27000286590497	7.41622885021161	7.52764203067497	7.41525758399018	7.19021340319589	0.150789584705861	0.533732797442697	0.852611707295576
Merged-chr9-59539748-5	chr9	59539282	59540282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010421, exon 1 of 14)	exon (NM_010421, exon 1 of 14)	242.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	8.81921883304434	8.98597689902039	8.55156300128953	8.65298430522514	8.84689329260043	8.48532039309118	-0.175685678530884	0.448648400322895	0.807334258089693
Merged-chr10-119055858-4	chr10	119055353	119056353	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5354.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	8.4583583304786	8.3276863630826	7.78971488081194	8.12787850763126	8.51818625838414	7.85477194610922	-0.0361520423973622	0.900641788647738	0.976900442352196
Merged-chr13-21722490-1	chr13	21721990	21722990	+	874.0	f0_balb.idr	TTS (NM_178200)	TTS (NM_178200)	446.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	4.96031612829962	5.25418579935536	5.32919517838213	5.85577410980529	5.72740973730676	5.82911687391634	1.18390547775961	0.000505778977504472	0.0105847226258029
Merged-chr5-120907005-4	chr5	120906529	120907529	+	664.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145211, intron 1 of 6)	MIR3|SINE|MIR	496.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	5.63309182032389	5.45356981524528	5.53282541142461	6.15433746570488	6.0780399344938	5.73926962488151	0.845948211522988	0.00835181038850332	0.0887191930047982
Merged-chr14-17902585-4	chr14	17902098	17903098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	MIR3|SINE|MIR	-79046.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.30594032537628	6.26392505386542	6.50930555837079	6.68222294928819	6.55925569556647	6.5338144090717	0.386791941107534	0.149460007794065	0.515942097930989
Merged-chr9-27029445-3	chr9	27028955	27029955	+	690.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178113)	promoter-TSS (NM_178113)	639.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	5.96840955516048	6.40148496177801	6.12537473635751	6.17822948325918	5.96608613866085	6.02965101324932	-0.209521485565184	0.493314731003513	0.831208279358962
Merged-chr5-135474546-2	chr5	135474046	135475046	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	MTD-int|LTR|ERVL-MaLR	70576.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.43754219701105	4.82436900011602	4.56341226854151	4.55076735518802	4.84173933261481	5.30640296747246	0.693339603087958	0.13250602608992	0.487102337923129
Merged-chr8-70001350-4	chr8	70000834	70001834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4950.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	8.09040895433505	8.19017322540757	7.93567239044666	7.92718458379946	8.31598093231843	7.77365619151766	-0.0615833241841223	0.80495846209403	0.953697404102693
Merged-chr3-106785333-4	chr3	106784831	106785831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	AT_rich|Low_complexity|Low_complexity	4818.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	7.25939249424765	7.33538653352197	6.9743127754647	7.31079602881011	7.39615738549411	7.12809554765028	0.121962303634925	0.626785614016793	0.892948967077172
Merged-chr7-30232854-4	chr7	30232349	30233349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360649)	promoter-TSS (NM_001360649)	-652.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	6.67249770330477	6.73482006134784	6.36574275914577	6.42352444785244	6.40588688052056	6.28322628322424	-0.378480351646584	0.170845325585356	0.548635631635457
Merged-chr9-108053063-4	chr9	108052572	108053572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177275)	promoter-TSS (NM_177275)	-87.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	4.41577644758993	4.26375197455194	4.88240945665013	4.68056318256437	4.3763568640539	4.91312203299456	0.311105080219935	0.515845344938678	0.843966720312586
Merged-chr8-46951934-5	chr8	46951462	46952462	+	784.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34925.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.80200807985061	5.74248258208172	5.80177286949241	6.03236995099442	6.05396454846875	5.73154986554248	0.31414592856179	0.30580088655481	0.701883343337569
Merged-chr2-52857790-4	chr2	52857307	52858307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172409)	promoter-TSS (NM_172409)	-61.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.17860969505513	7.1444658410588	7.38518664177095	6.90580875381501	6.87957496960237	6.92817862992467	-0.502564299845544	0.0378228369078151	0.240511747317023
Merged-chr8-119345189-2	chr8	119344689	119345689	+	858.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_024219, intron 2 of 3)	B3A|SINE|B2	651.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	5.21030720420061	5.51417404858097	5.31398664057447	5.53698491204943	5.29790799319514	5.17806603862082	-0.0111020406968129	0.975248017289817	0.994454548709104
Merged-chr3-27275399-4	chr3	27274888	27275888	+	907.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-41689.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.02059531250718	4.93161096567712	4.79558125842672	4.95485541499009	5.05359056149244	5.17969028363992	0.292304091068712	0.438647230738366	0.800679143913084
Merged-chr2-158130660-7	chr2	158130158	158131158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	15734.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.70397702295576	5.7619525085563	5.81730354623998	5.90347480891967	5.60166709611846	5.94931156740993	0.103979274400868	0.7426880137245	0.935349168989816
Merged-chr13-97441984-3	chr13	97441433	97442433	+	559.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	6963.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	5.58645637101581	5.32241652913478	5.94980583933603	6.00959195577002	6.18157666851864	5.60163291554014	0.591642068627491	0.103951857332342	0.429882849586243
Merged-chr10-81428287-2	chr10	81427787	81428787	+	791.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1114.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	2.40073107290409	2.7073598684464	2.47354547132819	2.58562520174301	2.40179060633077	2.7370995697296	0.235883938348307	0.774306699303986	1
Merged-chr3-89515659-4	chr3	89515176	89516176	+	906.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4488.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	3.02731718261392	2.97143102864259	3.29165240398286	2.83921702442608	2.74550497693851	2.65075271034512	-1.75725342342175	0.0210073669748539	0.166774679985422
Merged-chr4-8912879-4	chr4	8912378	8913378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	161554.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.70460706032211	8.19317376986789	7.82860200308194	8.02635002257143	8.64180941217091	8.26779538606876	0.580833339642831	0.0328691918165988	0.220919201346975
Merged-chr4-8802497-2	chr4	8801997	8802997	+	823.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51173.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.6014155302322	3.93365563511627	3.70884420262896	3.56933507646575	3.68734345369939	3.77872904691634	-0.268681959043608	0.627583479146741	0.893330206932885
Merged-chr17-78989152-4	chr17	78988651	78989651	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171004, intron 2 of 18)	intron (NM_001171004, intron 2 of 18)	19354.0	NM_001171005	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	3.22755649804468	2.89058623057651	2.94751405314056	2.76661042305234	2.72412251584178	2.76944840074333	-1.42454960437933	0.0532409619604387	0.295811562687245
Merged-chr9-120577726-4	chr9	120577222	120578222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_073359, exon 1 of 1)	non-coding (NR_073359, exon 1 of 1)	391.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	8.13933641325176	8.35716387524977	7.92371944241137	7.97884408637491	8.10994984504092	7.64295746112382	-0.317473891269723	0.206539415593551	0.597141275948059
Merged-chr17-36839225-4	chr17	36838737	36839737	+	934.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	Lx4A|LINE|L1	2091.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	3.95860399708656	4.16117908494692	4.08268047121351	4.01692159264876	4.23413838203264	4.10365927531447	0.160864114946818	0.740274211628493	0.934501571762959
Merged-chr2-102981626-2	chr2	102981126	102982126	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79961.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.37736501125665	3.15874286189711	3.23819756576912	3.26540530205352	3.12140436363569	3.30992231046195	-0.134358171584646	0.830821651009108	0.960370002015736
Merged-chr6-125252907-4	chr6	125252409	125253409	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12616.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	6.10183052840043	6.01260945669891	6.31937816112399	6.31495013244897	6.71504344076611	6.48912200059178	0.629868145281457	0.0312839226601026	0.214138913845164
Merged-chr5-121388129-4	chr5	121387586	121388586	+	779.803589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2471.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	6.08377373688781	6.06912491065505	6.00011886482244	6.00544725430245	6.36415855317473	6.25505318322563	0.283070054190888	0.334341635234678	0.724883973366998
Merged-chr1-152580615-3	chr1	152580118	152581118	+	846.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	ORR1F|LTR|ERVL-MaLR	44599.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.39721169025066	7.03582952035535	6.97337041377021	7.34343791384591	7.42131366910619	6.98854948959537	0.175461919629444	0.519404230881018	0.84582839931823
Merged-chr19-46467251-4	chr19	46466713	46467713	+	837.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-34435.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.4623893894216	3.52319988729365	3.52629864380497	3.43590284637375	3.39966149571831	3.48893791225398	-0.241156013904791	0.674089884759497	0.911832513842353
Merged-chr7-116447859-2	chr7	116447359	116448359	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4401.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	5.14713254316493	5.10677342581019	5.58030605874332	4.93329988150658	4.85281739860508	4.91976575907981	-0.807023759988597	0.0372760643625382	0.238280870106621
Merged-chr12-99883935-4	chr12	99883439	99884439	+	763.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-497.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	5.59253414151899	6.09838371780435	5.70854529365849	6.02799751279015	6.28691363749033	5.9523318476827	0.483616065196166	0.145449760673557	0.508618772268349
Merged-chr10-95357263-3	chr10	95356759	95357759	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20983.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	4.75174558748349	4.22572740459018	4.68053225487023	5.59560762501722	5.56628784461204	5.36085670340692	2.03453134721335	8.50116443150561e-07	4.70635322699081e-05
Merged-chr19-10279855-4	chr19	10279368	10280368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25009.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	7.5942592082924	7.40249919206329	7.21243978561409	6.92393259598489	7.13076520774248	6.63692827021498	-0.737247551594778	0.00685616930669436	0.0769547241355923
Merged-chr11-11694309-4	chr11	11693807	11694807	+	807.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	4130.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.4278745254799	4.32073081644852	4.21577071322538	4.58550497839113	4.16329394490481	4.42023190187682	0.175980565523703	0.705720890021731	0.922834459892351
Merged-chr1-127221712-2	chr1	127221212	127222212	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	B3|SINE|B2	16726.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.02096283094876	5.04940667137801	4.92843190804462	5.20213999113457	5.26379020324948	5.0315647577976	0.361593813594643	0.321839211854028	0.715274433767786
Merged-chr1-172356828-1	chr1	172356328	172357328	+	575.0	f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	15618.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	2.79880540105528	2.80667638301308	2.82809334007627	2.74514746679279	2.64430686495396	2.65040646143746	-0.698124224730501	0.340202968545652	1
Merged-chr6-115539137-4	chr6	115538641	115539641	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5563.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.154476067248	2.9339803444746	2.96547411071606	3.06175287306771	2.73546932132856	3.03872439299791	-0.345231710213281	0.627337594655845	0.893200091992326
Merged-chr17-81579930-4	chr17	81579442	81580442	+	962.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	158445.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.87927678061022	5.91187610942976	5.89007698386588	6.02134837375594	6.17594704088581	6.09000473179737	0.358206110133251	0.215804770861727	0.60921741726421
Merged-chr19-61226021-6	chr19	61225557	61226557	+	841.2222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009970, intron 6 of 11)	CpG-7695	2361.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.44531988134879	4.92296760681599	5.22445617392349	5.40814089541825	5.44854899065341	5.32089500589844	0.359514094085005	0.331792771444434	0.723058323983775
Merged-chr1-74364736-2	chr1	74364236	74365236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 6 of 9)	intron (NM_001033345, intron 6 of 9)	2628.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	3.21134473616396	3.45454197577329	3.63407655144225	3.55388756428251	3.30439161969818	3.70321164693779	0.311393289412844	0.615290067073635	0.887866671887744
Merged-chr17-34398298-4	chr17	34397758	34398758	+	958.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	-562.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	4.6838060312245	4.63236878095582	4.80334748441719	5.56150498155659	5.2783234973895	5.09555088293165	1.34860512968053	0.00048236507643908	0.0102214196459009
Merged-chr1-14579606-4	chr1	14579133	14580133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176333.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	5.47322860256589	5.71231152950393	5.5664592767494	5.41401146263517	5.58730551766778	5.51514739357988	-0.15011343764988	0.647850243889449	0.901546844242429
Merged-chr15-99381333-4	chr15	99380848	99381848	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-10866.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	4.75511500521808	4.3854716640752	3.83699455940663	4.57429055373679	4.48848021104398	4.1973241916522	0.115962029434071	0.837283456601687	0.962133986386607
Merged-chr11-53810389-2	chr11	53809889	53810889	+	974.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	39916.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.59025463319133	3.44271950146409	3.71017200398348	4.00385245690316	4.14333631511228	3.83444905355137	1.4115647155619	0.00966249647212985	0.0981202106972151
Merged-chr2-103058428-3	chr2	103057924	103058924	+	788.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	15089.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	3.89933891280223	3.70983241576871	3.85966094620455	3.61549300404429	3.62666998384049	3.9751694462331	-0.272695752776251	0.617341942084142	0.888810836054056
Merged-chr7-128745365-4	chr7	128744863	128745863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029982, intron 1 of 18)	L2c|LINE|L2	493.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	6.92187692702019	6.92844988642671	6.7822189602509	6.75861566102768	6.84703030906243	6.79464757064779	-0.126728475417955	0.607322732972099	0.884576914387733
Merged-chr5-105745492-4	chr5	105744927	105745927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	44617.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.87936994623504	4.80976354653404	4.86010272093521	4.92047641356597	4.58012041789028	4.99563803950972	-0.0381110675737487	0.924852281722076	0.983070278897208
Merged-chr1-149954164-4	chr1	149953659	149954659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	7131.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.7411395247716	5.68302160608088	5.74512574833776	5.6755802643724	5.60098165022499	6.01581802564974	0.075408598886645	0.815278252177857	0.956370078970016
Merged-chr14-54755600-1	chr14	54755100	54756100	+	583.0	f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	B1_Mus2|SINE|Alu	26286.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	7.18021305919474	7.31846655394071	7.44163116828293	7.42641552456957	8.03083409343736	7.78364204307535	0.673210999856293	0.0106588456683564	0.105132910191157
Merged-chr2-79180948-4	chr2	79180426	79181426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74500.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.30048683254845	5.49263405790323	5.36171851309077	5.28214348935733	5.20065711906898	5.2684049449002	-0.282235875212986	0.409778050314615	0.783037226945994
Merged-chr1-106713866-1	chr1	106713366	106714366	+	995.0	f0_balb.idr	5' UTR (NM_177410, exon 1 of 1)	5' UTR (NM_177410, exon 1 of 1)	424.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	5.32681566932319	5.11792634203719	4.69286476591754	5.1379426476453	4.81884289210249	4.67295932582509	-0.400859554364574	0.351670631402496	0.739403630741215
Merged-chr14-79548461-3	chr14	79547965	79548965	+	950.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	32791.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	5.84571301734965	5.66069630952643	5.82761000746775	5.7801555388984	5.96820108932037	6.09168622747685	0.306047525755933	0.321494316051291	0.714882390432811
Merged-chr18-32857361-1	chr18	32856861	32857861	+	945.0	f0_balb.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20074.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	5.50182656956269	5.70696193098749	5.69329750545692	5.43769518583418	5.66207608960189	5.828961292929	0.0222835233126293	0.946197468949367	0.98796006280508
Merged-chr8-105596764-7	chr8	105596173	105597173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8556.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	3.28030049753458	3.43603330043049	3.16209798678772	3.61869770435543	3.26613294886694	3.52611258588425	0.655857990787212	0.298359665105734	0.695033763938461
Merged-chr11-60726396-2	chr11	60725896	60726896	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022009, intron 1 of 29)	intron (NM_022009, intron 1 of 29)	867.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	5.66626291231386	5.77434262419785	5.49979063075006	5.42408200280749	5.65343193745396	5.12696148345096	-0.416032294187667	0.244452340456833	0.641814664417902
Merged-chr13-112012859-3	chr13	112012364	112013364	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144928.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.55931240355046	3.50578494810806	3.36474512709781	3.10759713678082	2.9710718590461	3.07879144115383	-1.89500052907601	0.00411956794998503	0.0530872245820057
Merged-chr7-132656778-4	chr7	132656261	132657261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	46118.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	5.39881403764615	5.20919625134145	5.64048659763331	5.06629510537556	5.08570593338691	5.08830666406965	-0.68273295821718	0.0606937324505006	0.319101837203376
Merged-chr4-128655518-2	chr4	128655018	128656018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	816.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.15792807441945	7.51613179437317	7.21260149556955	7.1703389129191	7.30159450930766	6.93968876528512	-0.233990854096057	0.369548675798625	0.754227853743163
Merged-chr13-97546326-4	chr13	97545832	97546832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13668.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.94214475603207	5.96866060391228	6.12545842819661	5.51359846886275	5.51049077048767	5.50065949329387	-0.908116161671557	0.00335391393447987	0.0457121164062574
Merged-chr13-106947076-4	chr13	106946568	106947568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-61.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	7.02586220596456	7.17597797586216	6.94521084252235	7.15901800468163	7.1803387497476	7.21094595328841	0.18727410341166	0.4327366208351	0.797472325349157
Merged-chr11-75169776-2	chr11	75169276	75170276	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010430, exon 1 of 2)	5' UTR (NM_010430, exon 1 of 2)	479.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.93978834422415	4.44477132658364	4.8312922561683	5.72707693739898	5.43797842626716	5.41477212481455	1.62470975100533	4.50766851791683e-05	0.00144760355862147
Merged-chr12-56434748-4	chr12	56434240	56435240	+	923.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88846.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	3.30543156065418	3.41845571431219	3.34897724660837	3.57583417303144	3.47561225766888	3.63785322434859	0.750929239099842	0.197877203722645	0.586043439320662
Merged-chr4-132411855-3	chr4	132411359	132412359	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161797, intron 2 of 12)	intron (NM_001161797, intron 2 of 12)	10587.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	4.06332764854872	3.94231856677164	3.96802227963168	4.17351090909041	3.91025352661876	3.93671107824426	0.0552849661111083	0.911809546619004	0.980192612109015
Merged-chr5-136199674-2	chr5	136199174	136200174	+	887.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-720.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	5.9019635291905	6.25354752625147	6.26599380792672	6.22036459610598	6.51013318397626	6.32595398767675	0.360178407535784	0.226781246513638	0.621775091254891
Merged-chr5-117131555-1	chr5	117131055	117132055	+	1000.0	f1_balb.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	-2033.0	NM_001081308	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.82868326531897	3.84664917518633	4.11421610603378	3.71692102246235	3.29549249500403	4.09574681171784	-0.606972917432611	0.328199866845862	0.720379184903597
Merged-chr13-21159455-2	chr13	21158955	21159955	+	754.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16400.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	3.18862773069371	2.93708864234137	2.90595740142876	3.08411506662408	2.93756148506398	3.32185277040542	0.439604426182415	0.529720689343592	0.851048470960073
Merged-chr16-20425936-4	chr16	20425444	20426444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	CpG	450.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	6.53420786201217	6.84407329524752	6.68396691212162	6.79472975565409	6.78451570939362	6.59178506742764	0.0582661641281281	0.826012216557375	0.959051716454082
Merged-chr11-107468424-4	chr11	107467883	107468883	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	2337.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	7.43725011000789	7.41852038730562	7.34492815561237	7.63551078397639	7.76768543864336	7.1866160517666	0.237988560952166	0.356758297643065	0.743448231367782
Merged-chr17-46384503-6	chr17	46384029	46385029	+	759.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021346, intron 1 of 7)	intron (NM_021346, intron 1 of 7)	763.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	5.93034495151409	5.54139056799326	5.48760440678275	6.23763062982572	5.66899794288508	5.93144652678745	0.51415357807543	0.147583803604538	0.512540235204358
Merged-chr9-65577100-5	chr9	65576634	65577634	+	937.4266359999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	2953.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.07124933772814	6.94440926830424	7.31354866626527	7.11177942075995	7.17916402298104	7.31687538742832	0.13765273544728	0.582110914826344	0.873528557789508
Merged-chr11-100703271-2	chr11	100702771	100703771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 3 of 12)	intron (NM_030150, intron 3 of 12)	1000.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	8.35119753949093	8.3727751233395	8.21597053012507	8.48932281830214	8.87152497703006	8.22475569094732	0.344462945522113	0.165749635466566	0.540878036824917
Merged-chr7-16841713-4	chr7	16841227	16842227	+	822.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133789)	TTS (NM_133789)	-1175.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	4.00043867843331	4.14285119143957	4.28225443344907	4.10323863333351	3.90463067751631	4.30674525884981	-0.104862023220083	0.832730660665847	0.960744482365521
Merged-chr16-13239779-3	chr16	13239275	13240275	+	888.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-16706.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	3.75928953890932	3.4276741097245	3.41669958910614	3.44996060637686	3.57524794936413	3.65303625771053	0.0365193266529546	0.950565128513303	0.988444308820256
Merged-chr6-120149497-2	chr6	120148997	120149997	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	URR1A|DNA|hAT-Charlie	-44326.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	2.84243309913918	2.95026916696274	2.87424161121983	2.74592648664738	2.83715174929208	2.55793591941583	-0.848866161698775	0.269590809443733	0.666729441884206
Merged-chr5-150595570-4	chr5	150595059	150596059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1034.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	7.66745179524957	7.82553939145085	7.30917115383305	7.61445451423936	8.16171682397256	7.61530370333989	0.297980093054614	0.29064605241533	0.68849503869996
Merged-chr11-77680248-3	chr11	77679738	77680738	+	804.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5901.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	3.31009203733277	3.28557554078892	3.37868651358829	3.54941844284689	3.40826628270574	3.61025950568693	0.753989358763747	0.200595422567553	0.589730555806838
Merged-chr9-37489001-7	chr9	37488476	37489476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-345.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	8.14309351697067	8.35307288139202	8.04582003796088	8.2202187190081	8.4053543034935	8.17167965814408	0.11560154780177	0.603070316934484	0.882523301644118
Merged-chr5-97355346-4	chr5	97354851	97355851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	36979.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	3.40518011009818	3.17640777463644	3.46521466826795	3.33502092226397	3.19932834465933	3.77100684731373	0.386436096152969	0.552054809253609	0.861546661145201
Merged-chr14-30654359-4	chr14	30653869	30654869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177815)	promoter-TSS (NM_177815)	-6.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	7.45441398151345	8.01063054028856	7.46618162447468	7.53123489691124	7.75069217545561	7.40391156987748	-0.148955819290725	0.586306357454732	0.875450945538768
Merged-chr7-98805572-4	chr7	98805070	98806070	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-29542.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.92731770452084	5.70388801571487	5.22364914572459	5.58909945302795	5.39195424025255	5.0624210810633	-0.544216476039916	0.165196330633029	0.53999992378549
Merged-chr13-97138692-2	chr13	97138192	97139192	+	565.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021552)	promoter-TSS (NM_021552)	755.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	6.68658518629119	6.99453417386984	6.4397208301771	6.97625895602133	7.16633755876535	6.86158881111497	0.422637272296832	0.136343924123019	0.493342548200911
Merged-chr13-34199630-4	chr13	34199157	34200157	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	36693.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.04086320836927	3.81427883337483	4.19639928349335	4.86679052891889	5.15397514379859	4.89616542643587	2.51836395218692	6.96711730735652e-08	5.15765032838542e-06
Merged-chr4-130785590-2	chr4	130785090	130786090	+	955.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6947.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.10618598223	4.97007741338524	5.19982805847813	5.13099552985346	5.21704938150429	5.52306308639635	0.415103434749064	0.259404257444074	0.656962698323131
Merged-chr4-98321926-2	chr4	98321426	98322426	+	837.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61339.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	2.57278764666866	2.72223310629676	2.64297218210248	2.6382840730112	2.55519488497286	2.89657067614504	0.272926022678491	0.721498682222641	1
Merged-chr17-29490527-4	chr17	29490033	29491033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008842)	promoter-TSS (NM_008842)	-512.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	7.92736757754833	7.57808837969229	7.29575081602441	7.58634831531634	7.76576991994719	7.38816805728876	-0.0571462718407868	0.833688723182831	0.961104751385188
Merged-chr8-88667976-4	chr8	88667471	88668471	+	739.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20624.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.65425174105903	6.7170281334349	6.85508710608479	6.75425459914058	6.92107298922229	6.899169153276	0.190004634987299	0.451092383709595	0.808898216967113
Merged-chr2-34775510-2	chr2	34775010	34776010	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163434, intron 8 of 8)	intron (NM_001163434, intron 8 of 8)	3420.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	5.06732285792998	4.51564566384573	4.53333432883222	4.93228831980347	4.52357696238065	4.64506558975232	-0.0674266422069458	0.882801049832161	0.973289561088012
Merged-chr11-62224142-4	chr11	62223659	62224659	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-24825.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	3.31133426661667	3.19945411688654	3.36327032836591	3.15324324141027	3.22909446199194	3.32457880917769	-0.225588956403284	0.715408844951481	0.926392907650078
Merged-chr9-100503932-4	chr9	100503451	100504451	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 2 of 3)	B1_Mm|SINE|Alu	2905.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	7.13622826613372	7.31388777417166	7.05118881487085	7.07595362947585	7.12800541172001	6.73635106597129	-0.263802070675922	0.309952728823423	0.705488597530962
Merged-chr2-91986220-4	chr2	91985730	91986730	+	851.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011957, exon 10 of 12)	exon (NM_011957, exon 10 of 12)	-22667.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	3.53857644506056	3.11983734625402	3.17659905821319	3.56388335347622	3.61729178047915	3.37393546548227	0.861754677134864	0.182567114781578	0.565398543501872
Merged-chr4-148044405-2	chr4	148043905	148044905	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 3 of 12)	intron (NR_027809, intron 3 of 12)	3216.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	3.78532479244757	3.78147166119424	4.29761406817022	4.40873572730333	4.35617271891841	4.23397457895807	1.058751015353	0.0391052013788419	0.245171594457532
Merged-chr9-118794662-2	chr9	118794162	118795162	+	641.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	82970.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.02234225105342	2.97494132906921	3.45505313304769	3.17130211817973	2.94729873688869	3.15284751036038	-0.301471792635366	0.662268731415311	0.906707526056423
Merged-chr18-60844586-2	chr18	60844086	60845086	+	898.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	4378.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	6.35814218475235	5.82872299819338	6.28405193298289	6.48160935172144	6.41349233145779	6.36338934912393	0.410551415447537	0.177369496232956	0.558275118873952
Merged-chr18-32838089-2	chr18	32837589	32838589	+	567.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	-802.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	5.37894211675398	5.46871291107915	4.94797517589379	5.23473729399555	5.13776365712954	4.93559927109873	-0.371587342240231	0.335057667926454	0.725339338581532
Merged-chr10-63176604-4	chr10	63176102	63177102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 2 of 19)	Charlie1a|DNA|hAT-Charlie	27350.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	6.6706811099075	6.20949416777726	6.58363541031273	6.84190685865866	6.58394522627653	6.8144172447429	0.392332773371315	0.171324089543735	0.54932102877065
Merged-chr19-11766616-4	chr19	11766108	11767108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3807.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	6.00863451146975	6.09082859504518	6.18479068810901	5.97666523111162	5.84341070442313	6.26419897071131	-0.112849193774077	0.710199943494905	0.924281856562368
Merged-chr16-31929896-2	chr16	31929396	31930396	+	885.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3955.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	3.36190753229885	3.33885766467405	3.73373765779209	3.48758785046407	3.59455717336697	3.75421572926848	0.472746393565092	0.425759666564094	0.793340282957454
Merged-chr14-64943940-4	chr14	64943440	64944440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	ID4_|SINE|ID	5917.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.40387740108087	5.37120553637323	5.82600748863702	5.36449141751512	5.58969975624017	5.86322355179577	0.144883619263975	0.688917417170247	0.917235946766438
Merged-chr4-43959883-4	chr4	43959388	43960388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	2186.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	5.90323499155496	5.50001055469609	5.49374148404863	6.09249678855462	6.25506575637964	6.01352268628542	0.835651326366916	0.0101909786764076	0.101711761269824
Merged-chr5-146761047-1	chr5	146760547	146761547	+	815.333313	f0_c57.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	33909.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	3.71984189316369	3.80864875479659	4.01897275526601	4.51072093653634	4.53750126473778	4.28091414753111	1.75364127137507	0.000366932486538888	0.00820965806397629
Merged-chr4-55342001-3	chr4	55341499	55342499	+	901.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-8043.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.39908687800265	3.36066143566688	3.23095332822131	3.23195603021896	3.16747299073058	3.46953286509315	-0.190179611617449	0.760135443739483	0.940622676343281
Merged-chr6-143100848-2	chr6	143100348	143101348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-696.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	4.1145725996388	4.29253727158906	4.45350796012183	4.51334056850345	4.84779568985809	4.43451731825245	0.8498874597785	0.063773667323695	0.329042216404573
Merged-chr19-5801174-4	chr19	5800688	5801688	+	920.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	1484.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.62273364811601	7.66890459401887	7.45360740982331	7.91085933826762	7.97666766066696	7.69849198674929	0.407437415257587	0.0743563034887876	0.358689738575861
Merged-chr2-43751796-2	chr2	43751296	43752296	+	771.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	2972.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	2.46198885710242	2.6680605247155	2.47238003831416	2.70405260588691	2.42853330830258	3.08876383245942	1.20670825893624	0.155988702540704	0.526146498074787
Merged-chr15-78331710-3	chr15	78331216	78332216	+	905.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	5726.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	3.89265201602237	4.24750980604804	3.94877329229691	4.22163485913059	4.26376343949734	4.11971782063317	0.452525204244355	0.36100374372085	0.746963731723393
Merged-chr7-27860585-4	chr7	27860092	27861092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	7.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	6.35678152873365	6.46097793597306	6.96622412610396	6.75277519906379	6.45017872777239	6.8521222189601	0.121918498363609	0.692563110907199	0.91870248759071
Merged-chr2-153171471-1	chr2	153170971	153171971	+	542.0	f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	ID_B1|SINE|B4	10170.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.5143233984376	5.64881859293948	5.5134680986787	5.7027349876681	5.56366824294535	5.36056070969584	-0.0124550676310283	0.969990859541431	0.993292796110114
Merged-chr9-106159935-4	chr9	106159399	106160399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1761.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	8.12686969978937	8.8083194530946	8.09512157779234	8.0945724561699	8.32324992053681	7.89513695136067	-0.383879574233855	0.178693417938681	0.560027190954491
Merged-chr5-32755291-3	chr5	32754771	32755771	+	736.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-8929.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	3.26828127918558	3.23964778391745	3.42994952629522	3.25280818302283	3.21947184354248	3.28183408215926	-0.245116186758638	0.689288867417441	0.917319650405699
Merged-chr4-109120342-2	chr4	109119841	109120841	+	694.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2305.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	6.4649392521711	6.65217171508501	6.76722855163894	6.916024464024	7.174396077434	6.82587938934064	0.562118599863886	0.035431430783559	0.231066579876039
Merged-chr1-127225863-3	chr1	127225363	127226363	+	862.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20877.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.14453644091761	6.09002247035121	6.24029193582623	6.09356221074081	6.00627101571749	6.02445675883598	-0.194348380627413	0.493570330671056	0.83140676710078
Merged-chr2-32834679-4	chr2	32834158	32835158	+	820.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	12574.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	5.79537118370793	5.88024176415682	5.75737129325558	5.65200540996061	5.6832830215177	5.84391497144198	-0.168369137450018	0.583821607763795	0.874225271981634
Merged-chr10-11343669-4	chr10	11343176	11344176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010146, exon 1 of 4)	exon (NM_010146, exon 1 of 4)	231.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	7.35958519380382	7.17545701932694	7.17045515525875	6.93473588273177	6.68791661258431	6.6717736729612	-0.715086798776523	0.00453353897126769	0.0571382476100033
Merged-chr12-100398843-2	chr12	100398343	100399343	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	intron (NM_001033213, intron 9 of 19)	121979.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.53717741183733	3.83488969464493	3.83422604282283	3.32520943028625	3.64479417434944	3.54556195293104	-0.776941367709812	0.18867972352763	0.574222837446979
Merged-chr4-150568780-4	chr4	150568254	150569254	+	951.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83420.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.46544585814236	6.66359681452263	6.50687554772678	6.39733039683979	6.83863800224021	6.71572753551731	0.187527598044742	0.503453374321843	0.837052889076112
Merged-chr11-5543482-3	chr11	5542998	5543998	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1281.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	3.82153911718348	3.70086441769893	3.72739146777921	4.29192372227848	4.01572791610984	4.24070597256091	1.30855011213307	0.0108937060991352	0.106715740180933
Merged-chr3-87930216-4	chr3	87929721	87930721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	-26.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	8.11862694158083	7.88027064831564	8.01052493657679	8.05858326032726	7.96114629764593	7.79715355103061	-0.0846824016832543	0.703475427903374	0.922108924938678
Merged-chr3-137950643-4	chr3	137950148	137951148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	30901.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.75543934885585	6.64916371405892	6.87117808058165	7.18489520571393	7.33721712132139	6.71028728371274	0.550741117089044	0.0501700230157622	0.285159854855906
Merged-chr15-9748883-4	chr15	9748355	9749355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177123)	promoter-TSS (NM_177123)	13.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	4.45095289998299	4.55085564589518	4.5642869179334	4.44788517645303	4.1241803244383	4.42422369709921	-0.489531931489187	0.274589249482115	0.671921605426063
Merged-chr9-32511028-2	chr9	32510528	32511528	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	30424.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.14391213848613	5.09490288267643	5.30037034168238	5.18217182755855	5.1131925199301	5.39255468364771	0.101044534829475	0.778344699290312	0.945439632982223
Merged-chr3-96220892-4	chr3	96220389	96221389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	-9.0	NM_175662	319176.0	Mm.358954	NM_175662	ENSMUSG00000068855	Hist2h2ac	H2a-613b	histone cluster 2, H2ac	protein-coding	8.14675536968961	8.40316573000781	7.97456802291172	8.04696756687103	8.48188551779398	8.19410710367351	0.0937983774783095	0.704280736458182	0.9223772679418
Merged-chr1-86440705-4	chr1	86440216	86441216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14387.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	5.97478627936791	5.40135365541149	5.76963226567038	6.04341157770475	5.719039636428	5.85652656992409	0.251882213135623	0.465437922997475	0.817020164214671
Merged-chr8-25982357-4	chr8	25981846	25982846	+	919.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-5602.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	5.73193708385526	5.79918060035046	6.1310198209581	5.76024472245903	5.71009846758025	6.00367065189785	-0.117828626627959	0.714649767929616	0.92601294778158
Merged-chr1-184048166-3	chr1	184047656	184048656	+	889.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	13775.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	4.60345499206853	4.47225481071471	4.66765523260121	5.01679066088256	5.31053946888089	5.0370040095513	1.25594886872713	0.00151186419027022	0.0248518010651757
Merged-chr4-102930857-4	chr4	102930355	102931355	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 17 of 23)	intron (NM_144906, intron 17 of 23)	-55524.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	3.80567790610616	4.06627745833542	3.82991438088583	3.45319851325324	3.30566639983419	3.58586255013705	-1.66099167592483	0.00420648144344078	0.0539976716979051
Merged-chr17-67207254-4	chr17	67206759	67207759	+	815.5500490000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	147200.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.50923638559527	4.44475284539867	4.52767315568589	5.40241032588639	5.23511583330266	4.96680158504587	1.63611498347297	4.51583575614383e-05	0.00144966690431025
Merged-chr19-16122561-4	chr19	16122064	16123064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-10267.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.83849624322104	5.97471608096194	6.09969850661299	6.65511375774605	6.72098976257477	6.53215139848765	1.11932814319945	5.39954829013497e-05	0.00168478497169449
Merged-chr4-126153993-2	chr4	126153493	126154493	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025856, intron 6 of 11)	B1_Mur4|SINE|Alu	5990.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	3.94711939507266	3.82738605369272	3.81326574102479	3.66945363728811	3.79927412424824	4.07105469491124	-0.0516039518199789	0.92260090590725	0.982621045978137
Merged-chr15-103342627-4	chr15	103342117	103343117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2531.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	2.32440166292146	2.38999771914803	2.68489557773806	2.3356230542199	2.07688900479688	2.39126411591733	-1.32746475566542	0.148856649105872	1
Merged-chr2-120153721-4	chr2	120153214	120154214	+	985.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	861.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	8.05951725447354	8.29082253231634	7.60692425786251	7.67144026887861	8.02049495553068	7.42877270464185	-0.405739186056322	0.159959007342006	0.532501868349568
Merged-chr4-155249418-4	chr4	155248875	155249875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	-591.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	5.55518803189897	5.65386263988504	5.84427094033034	5.6897113566552	5.79906218978133	5.65162218014199	0.0727648993890856	0.818760047908291	0.95707243698819
Merged-chr6-71629093-2	chr6	71628593	71629593	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362200, intron 2 of 25)	intron (NM_001362200, intron 2 of 25)	3593.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	2.77311857548079	3.06436695985062	3.07768971112308	2.97315675552585	2.87026524491112	3.09242086534402	-0.000417154099336022	0.999524711803303	0.999920050950963
Merged-chr4-119422341-4	chr4	119421823	119422823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	97.0	NM_001355214	106564.0	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	6.35364385074366	6.84462301053953	6.5417011131872	6.56821925474343	6.58755917438368	6.18424769848691	-0.209868042041996	0.487899154459609	0.828743097992968
Merged-chr9-18473650-4	chr9	18473179	18474179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028935)	promoter-TSS (NM_028935)	-34.0	NM_028160	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	6.66573145360014	6.76915335142706	6.6483801310159	6.65721635474544	6.79868746305244	6.64069486249397	0.0126377947199122	0.960428334390204	0.990380695859216
Merged-chr8-77442630-4	chr8	77442112	77443112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-74444.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.77286597936959	7.52590599963004	7.17064475048133	7.39371191202164	7.47299310409337	7.10917697039616	-0.264933898659612	0.330858787552247	0.722226411767471
Merged-chr4-33310991-6	chr4	33310551	33311551	+	778.0888669999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305273, intron 1 of 15)	intron (NM_001305273, intron 1 of 15)	740.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	6.22672269067149	6.54548490896499	6.17941612391785	6.66500635290833	6.54515522369514	6.12668457565219	0.227966033029505	0.459068993937485	0.813375481603532
Merged-chr5-21411510-4	chr5	21411030	21412030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	13147.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	7.44200119739869	7.54896484550297	7.207665253708	7.69900649549884	7.90013524838096	7.49463260285591	0.43892018443338	0.078059138434823	0.368853699294949
Merged-chr6-22474812-4	chr6	22474298	22475298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118717.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.02256863538064	5.14368523656866	5.0398807838355	4.98245621347721	4.94669583823841	5.38431800742141	0.072387532213554	0.849686187556494	0.964686793473289
Merged-chr17-35921331-2	chr17	35920831	35921831	+	760.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357740, intron 1 of 18)	intron (NM_001357740, intron 1 of 18)	2059.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	3.40626434684264	3.43676314497946	3.29961410132301	3.28386085092348	3.37708003730074	3.12931980450828	-0.436995251156829	0.48424675318904	0.826755140042123
Merged-chr3-123267383-4	chr3	123266848	123267848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-148.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	8.30596332940027	8.29031656178668	7.82506084103157	8.02480855972523	8.08658015518226	7.73823478926235	-0.285383836318776	0.254878054276492	0.65198679229535
Merged-chr19-46511007-4	chr19	46510509	46511509	+	989.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9361.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	7.50055168508773	7.3759220866498	7.19370287726185	7.52609568246044	7.8591432740699	7.38212827079326	0.359956878801848	0.161177036607783	0.533909498150735
Merged-chr5-137886157-4	chr5	137885644	137886644	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14386.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	3.29587919134595	2.87049005188567	3.42094341826292	3.05965876626204	3.35463483519431	3.2192011981836	0.017792572860911	0.979840671574429	0.995355722679068
Merged-chr2-35196430-4	chr2	35195916	35196916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	4704.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	5.45245135297574	5.33853581122038	5.63810112379955	5.73961110419442	5.38140826254691	5.62057103332607	0.208078568172947	0.543037037891112	0.857468369859798
Merged-chr3-127794429-2	chr3	127793924	127794924	+	783.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	ORR1D1|LTR|ERVL-MaLR	3767.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	5.11868826124003	4.86278483885857	4.93803338398695	5.09328452506648	5.05405146788303	5.14261980252115	0.242699104323003	0.513534073957432	0.842620796786693
Merged-chr3-154286581-3	chr3	154286086	154287086	+	995.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43974.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	3.41542880364379	3.41143053580985	3.48294959575506	3.69299915896639	3.58953646659306	3.32189905202056	0.422060061014899	0.475067613343019	0.821727753368561
Merged-chr12-91384492-4	chr12	91383996	91384996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181815)	promoter-TSS (NM_181815)	-87.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	6.37561713571582	6.40624449700588	5.68275101455466	6.37888011331807	6.3890117398729	5.58791900687446	-0.0418496887392731	0.91502872997946	0.980959026698783
Merged-chr17-32363996-1	chr17	32363496	32364496	+	677.0	f0_c57.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13419.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	4.50189887204251	4.00750018571287	4.28949689430068	4.73541506527664	3.96178631332281	4.06532452011311	0.060340269600636	0.912866614408684	0.980492910089427
Merged-chr7-79392311-4	chr7	79391801	79392801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145946)	promoter-TSS (NM_145946)	-37.0	NM_145946	208836.0	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	5.80030760169467	5.79120642869432	5.78688096120067	6.00114213459248	6.09443408204399	5.82306240080897	0.343089096161432	0.254087006358739	0.651179145391095
Merged-chr9-45955244-4	chr9	45954769	45955769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172257)	promoter-TSS (NM_172257)	-20.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	8.62813764189807	8.87196576711893	8.41953412002527	8.43034853479664	8.50313151513396	8.45781995245559	-0.268976407521131	0.225785826047396	0.620701256044383
Merged-chr3-97775936-4	chr3	97775385	97776385	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7871.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	6.64544539257661	6.73793557557384	6.63736693478561	6.8973632018188	7.19159262180865	6.66248823714864	0.42299718547099	0.123160174859849	0.469506200107129
Merged-chr12-102748319-4	chr12	102747832	102748832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4572.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	7.37416946040578	7.74866752932114	7.25248651166793	7.6141558890591	7.95079418641156	7.48078776635639	0.32116092776544	0.236454555990761	0.632745673713476
Merged-chr1-86489514-2	chr1	86489014	86490014	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-37043.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	2.26414938803816	2.35695816328373	2.10484878721114	2.32145291994089	2.1937671057826	2.51218281864521	0.637945767335958	0.48077615167888	1
Merged-chr5-86129994-4	chr5	86129523	86130523	+	996.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172712, intron 23 of 32)	intron (NM_172712, intron 23 of 32)	42720.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	4.03081361028671	4.74186570684372	4.68793964045348	4.65519016310836	4.76766726757004	5.21395353860642	0.851652941500046	0.0889091408228956	0.395986048321256
Merged-chr7-128524780-2	chr7	128524280	128525280	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013863, intron 1 of 3)	intron (NM_013863, intron 1 of 3)	1197.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	7.08473718407966	7.72452807563911	7.22939295706985	7.16680133361696	7.30451657984499	7.27514387530014	-0.197907325423593	0.475541240109887	0.822038755729998
Merged-chr11-88131973-3	chr11	88131402	88132402	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	32756.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	2.77441314729788	2.60469931319778	2.67883358868309	2.84723261818986	2.56024754578196	2.81510447579526	0.293145172269491	0.698382640142167	0.920332843065367
Merged-chr15-33212023-4	chr15	33211514	33212514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	MIR|SINE|MIR	128885.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	6.70459932057889	6.86934199907897	6.42117263733336	6.99200149218239	7.11115348126501	6.7509176793261	0.431349902893592	0.120499616720261	0.464212792632043
Merged-chr8-105701141-4	chr8	105700634	105701634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-14.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	7.86414735222231	8.14222621511675	7.74761244616701	7.87277382783255	8.29598782441828	7.70323474901768	0.0824855331791193	0.756488488982967	0.939629132869937
Merged-chr2-68383859-2	chr2	68383359	68384359	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	88122.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	3.25769102437828	3.17167950719522	3.27628227339081	2.975016455027	3.00247830831796	3.23680246900453	-0.718818925811943	0.271123807550849	0.668361183862025
Merged-chr3-31139229-4	chr3	31138715	31139715	+	816.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10705.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	4.27528456876574	4.43381019934633	4.28229749410243	4.43699547730413	4.70050731482785	4.60963080468442	0.639448002581791	0.14473434292078	0.507621952799257
Merged-chr12-64976130-4	chr12	64975605	64976605	+	822.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177805, intron 1 of 19)	intron (NM_177805, intron 1 of 19)	10363.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	4.44558373674958	4.06439531474282	4.39377200948847	4.28103784418357	4.34497217681536	4.58086730637698	0.243798951818974	0.60301207434541	0.882484631305431
Merged-chr10-93078628-2	chr10	93078080	93079080	+	633.0	f0_balb.idr|f0_c57.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	3016.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	2.92260627869186	2.88203664437105	3.264062664087	3.181686692577	3.06101283819455	3.4890824397601	0.962414817284952	0.166102015293613	0.541194161193161
Merged-chr11-96777687-4	chr11	96777185	96778185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163389)	promoter-TSS (NM_001163389)	-130.0	NM_001163389	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	6.28084001603361	6.10078876177825	6.49204840899917	6.15182503677746	6.36430327541559	6.2577597502412	-0.0444691548289236	0.878524707897346	0.971939493791947
Merged-chr1-36598524-2	chr1	36598010	36599010	+	707.5	f0_balb.idr|f0_c57.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-5178.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	2.8178067989526	2.67583519855575	3.03158973047516	2.73450728998435	2.85208388623546	2.99023333951168	0.0806490727496215	0.911987059587223	0.980227153274943
Merged-chr15-88751498-4	chr15	88750994	88751994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-217.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	7.86190667508879	7.65267648617634	7.25893469839546	7.80455186120269	7.41506206917179	7.32847686121506	-0.125999617634833	0.651888855137531	0.902896807825606
Merged-chr5-93268989-4	chr5	93268497	93269497	+	992.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007635, intron 2 of 7)	intron (NM_007635, intron 2 of 7)	1424.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	6.72251760884102	6.71765981865866	6.45037938424405	6.06119303325238	6.15352268166612	6.398948863041	-0.717900778988702	0.0109010311715663	0.106758222969746
Merged-chr8-79491515-4	chr8	79491025	79492025	+	883.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92057.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	2.92392514765074	2.8761974652399	3.26383973991234	2.9050012759378	2.82009600564829	2.88332917004055	-0.748552767020201	0.291872451768968	0.689235268138963
Merged-chr7-27228621-4	chr7	27228137	27229137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181593)	promoter-TSS (NM_181593)	-40.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	7.81316741341097	7.98807821722955	8.0981452289754	7.89779989284638	8.20524370304371	7.92912222243257	0.0785413130645616	0.733950357963484	0.932325051544019
Merged-chr6-67376237-4	chr6	67375742	67376742	+	949.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008354)	promoter-TSS (NM_008354)	-54.0	NM_008354	16162.0	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	3.39772918815298	2.99951307794368	3.18515609206908	3.16043277243428	2.88735734772025	3.017956395362	-0.797491815251995	0.248311661062032	0.645459303628836
Merged-chr11-116005112-4	chr11	116004611	116005611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005608, intron 32 of 39)	CpG	7608.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	6.29011550403744	6.27705703798897	6.23219060711243	6.38702214269628	6.19903167912352	5.89916793932529	-0.136007505381919	0.64561391289217	0.900657290738149
Merged-chr17-80450152-2	chr17	80449652	80450652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 5 of 21)	intron (NM_009231, intron 5 of 21)	30301.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	3.6323531193574	3.85555815430024	3.49070045091626	4.13842820799689	4.46815566421001	3.80952571505177	1.5180415909302	0.0100716514472892	0.100883829737094
Merged-chr12-59129769-3	chr12	59129276	59130276	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	28.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	6.38259766800186	6.43552950254019	6.22291417766215	6.29329107908166	6.38036789115267	6.283151020694	-0.0559399230966725	0.837824262235059	0.962251281434133
Merged-chr2-164874645-2	chr2	164874135	164875135	+	970.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4733.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	3.50469071090568	3.41497428055795	3.5743069263232	3.6314584341689	3.23721777572231	3.8407389902507	0.316153158880082	0.608328591639342	0.884987135568878
Merged-chr5-143602290-4	chr5	143601791	143602791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20156.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	5.38451605528874	5.11802027170881	4.83175610423134	5.39382690355078	5.38325624700983	5.05895624358796	0.307336828803611	0.432149276875755	0.797270167804312
Merged-chr2-163647072-2	chr2	163646572	163647572	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16B2|LTR|ERVK	-1929.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	3.16633234033412	3.39475266338076	3.43911898923623	3.21013562022614	2.90967258778537	3.2374339295775	-0.908465825996035	0.173257917301456	0.551957215225209
Merged-chr4-122884198-4	chr4	122883708	122884708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1868.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	6.97018142756152	7.40175350710729	7.14365112770186	7.31272799472845	7.51931891424497	7.21374368339445	0.258183279798518	0.320645929301859	0.714486534537161
Merged-chr11-97996007-4	chr11	97995491	97996491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152188, exon 1 of 6)	non-coding (NR_152188, exon 1 of 6)	182.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	6.05462010619742	5.80249834494856	5.85775626905024	6.20836417802365	6.08403917172485	6.19190076778349	0.425149718353241	0.149334890148866	0.515724144579849
Merged-chr10-61372690-2	chr10	61372190	61373190	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	10833.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	3.63301819945393	3.1893957849175	3.11935037068392	3.20197051386613	3.20423929446346	3.63792072903045	0.081927560115839	0.904904241824596	0.978178267667957
Merged-chr16-4911807-2	chr16	4911307	4912307	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	25707.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	3.77913481389433	3.92223211421525	4.25003095469076	3.7371183208535	3.70108530965351	4.01647215018438	-0.532662885210629	0.326414123471922	0.71871363873492
Merged-chr17-33563932-4	chr17	33563450	33564450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	L3b|LINE|CR1	8243.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	6.52752446245968	6.78326380985597	6.82145767314091	6.75748076580667	7.13639851089966	7.15536266997154	0.487308101551358	0.0731860046865206	0.355548284015728
Merged-chr11-83302690-4	chr11	83302156	83303156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-41.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	8.39845535622299	8.53960059153541	8.2003205506824	8.23264620781224	8.38606793407	8.31935869800843	-0.107543962582154	0.619905772590747	0.889979882381751
Merged-chr12-108938433-2	chr12	108937933	108938933	+	878.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	44161.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	3.71178538177749	4.05626802294158	3.65908965423581	3.53115779771671	3.67037418477189	3.67597207473578	-0.667884859772675	0.235668174035041	0.631930846218742
Merged-chr13-97544456-4	chr13	97543953	97544953	+	873.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15547.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.19206200917937	5.04077941816867	5.07352798014122	4.88042900236202	4.03479587609022	4.89662917661992	-0.984387340079915	0.0457024656391698	0.270009284358424
Merged-chr5-75933624-4	chr5	75933117	75934117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010612, exon 30 of 30)	3' UTR (NM_010612, exon 30 of 30)	44811.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	4.62909709822414	4.76355834854291	4.6808789834959	4.59456174684227	4.69533275794272	4.66733615355787	-0.0928611625086975	0.818191925171237	0.956886944398959
Merged-chr10-30810353-2	chr10	30809853	30810853	+	760.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7027.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	2.82434085920704	2.83584384434332	2.7655292719419	2.84697590434963	2.60885358490751	3.01797934271631	0.0951585633042315	0.89784933340904	0.976179002491449
Merged-chr19-9978584-4	chr19	9978076	9979076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2024.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.88878959487567	7.78752413436767	7.41679216711172	7.66498488884067	7.73909695512339	7.37197895234313	-0.162518272834299	0.52564614725806	0.849071708183764
Merged-chr10-23840779-3	chr10	23840280	23841280	+	891.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10682.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	2.50317697177913	2.58070910929246	2.61660379473851	2.34661257453587	2.49963558307902	2.43652095517518	-0.818518048520208	0.311322755042598	1
Merged-chr17-50512411-4	chr17	50511900	50512900	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	2853.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.34838028674069	6.76318531255465	6.24926870526765	6.80683982156905	6.79328998056418	6.31020773863891	0.290552676406937	0.353016846815735	0.74042924884689
Merged-chr11-59673246-2	chr11	59672746	59673746	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201245, intron 1 of 22)	MTC|LTR|ERVL-MaLR	10751.0	NM_012027	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	2.89666227949953	2.8199435939446	3.05966863052725	2.95532470607501	2.8526465621286	3.13104755785381	0.258874187878666	0.709228545472043	0.923935571500538
Merged-chr8-70755194-4	chr8	70754687	70755687	+	958.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166399, intron 1 of 4)	CpG	508.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	7.94593895438506	7.77330095391075	7.64671514579268	7.34282746030625	7.76791147944036	7.44370068691132	-0.374495277425095	0.133571816300648	0.488819290786001
Merged-chr1-161976604-4	chr1	161976100	161977100	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	3036.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	2.97243706978462	2.96020063263727	3.33085055895078	3.33383507112325	2.96038451055967	3.00702699972877	0.0825291299544606	0.906275170900126	0.978634961443839
Merged-chr18-11696611-2	chr18	11696111	11697111	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 5 of 18)	B1F|SINE|Alu	39262.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.76909015159981	5.20719588933664	4.96506224151567	5.33179156854114	5.60061492167671	5.42912040488491	0.939266716423795	0.0127018603822952	0.118993064477597
Merged-chr9-85750009-2	chr9	85749509	85750509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-675.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.56947326607374	7.11339784227301	6.92886466648622	6.89069110102742	6.77944998736533	6.81420721463423	-0.0981295739609494	0.723248999359815	0.929000340406704
Merged-chr8-72836096-4	chr8	72835575	72836575	+	953.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317391, intron 13 of 15)	intron (NM_001317391, intron 13 of 15)	74416.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	2.54492573013925	2.56201922294802	2.2956469261403	2.63553156595547	2.37019510546219	2.63867629217743	0.445702522884518	0.600989840871458	1
Merged-chr13-51837522-4	chr13	51837014	51838014	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9161.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.75766721422437	3.63990141200973	3.22179945144169	3.42289220885888	3.27037018894955	3.41851183980683	-0.73334841169135	0.246190129407461	0.643291932161035
Merged-chr10-80928687-4	chr10	80928152	80929152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	7.24890410536276	7.28752891294272	6.79927854043599	7.18576826182811	7.324654835413	6.93564699460769	0.0391020100338832	0.886785390516126	0.973794308941933
Merged-chr12-69373146-3	chr12	69372742	69373742	+	898.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007481, exon 2 of 2)	exon (NM_007481, exon 2 of 2)	1092.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	6.41109688375494	6.90999205127681	6.88817607279122	6.83474280182151	6.7476466258466	6.65847711139983	-0.00395251950953737	0.988844230497058	0.997430342931925
Merged-chr15-58734337-4	chr15	58733849	58734849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89078.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	6.28934448151046	6.39365890097821	6.19782339183062	5.94292767589303	5.93485612826991	5.78509999022046	-0.692186826703886	0.0167088257382337	0.143375061568212
Merged-chr5-67259884-3	chr5	67259441	67260441	+	708.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028975)	promoter-TSS (NM_028975)	-624.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	5.86668059964869	6.47900527316267	6.02571837973156	6.07312558788067	6.56807972393642	6.11023049564846	0.20436627823885	0.552536006456877	0.861794619516091
Merged-chr6-38864697-2	chr6	38864197	38865197	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	11493.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.35080735100433	3.75365092163871	3.39996587250386	3.34812809195276	3.47957280047825	3.83311494761196	0.157839245799847	0.801043966989058	0.95274755793001
Merged-chr12-24708189-4	chr12	24707688	24708688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009104)	promoter-TSS (NM_009104)	-66.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	4.09646395664697	4.15207330775477	4.22829475308117	4.38446988339499	4.26177759838395	4.29622166685481	0.432141419412483	0.343936171803127	0.732645864957409
Merged-chr16-76366969-2	chr16	76366469	76367469	+	622.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6080.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.35202622841847	3.55823639792157	3.79634546138044	3.76769566476296	3.47920676711075	3.81710563432018	0.400176992808713	0.497248429653177	0.833500500620649
Merged-chr10-125270417-4	chr10	125269926	125270926	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	38390.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.93257889219007	6.08711827118954	6.04976360660884	5.77953008265446	5.91197406013278	5.6339915835781	-0.409717333117035	0.180070708635495	0.561720159111581
Merged-chr15-93252598-3	chr15	93252080	93253080	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	22599.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	6.028579472596	6.0091260136703	5.52737281847218	5.37773993368395	5.71857124386531	5.49927648666217	-0.616422898390712	0.076631761057537	0.364718616603303
Merged-chr4-132959027-2	chr4	132958527	132959527	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15068.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	8.25135639454784	8.18202135878263	8.13362876894287	8.15154440956449	8.22710739223768	7.94730302358487	-0.100876993066433	0.638755411438196	0.897744982022018
Merged-chr2-84531835-3	chr2	84531336	84532336	+	999.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-24963.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.15648356874638	5.23852600574267	5.08586601717262	5.03329801530538	5.58162691700654	5.28521310047236	0.332411765134689	0.378741457570989	0.761238278986952
Merged-chr11-80079877-2	chr11	80079377	80080377	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	1114.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	6.42831292740611	6.41026072070415	6.37251617237883	6.76255065438586	6.576795641098	6.4324565067649	0.317057356868623	0.23874412300537	0.635449458992732
Merged-chr9-121710286-4	chr9	121709784	121710784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026794)	promoter-TSS (NM_026794)	-105.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	7.69208099010918	8.17290208620537	7.36804526299905	7.74544369545129	8.01959861723167	7.40195793799681	-0.0605489335623032	0.843209972722255	0.96331130255476
Merged-chr8-105835521-4	chr8	105835021	105836021	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024445, intron 2 of 15)	intron (NM_024445, intron 2 of 15)	7777.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	2.89329460801918	2.81087705342399	2.9173541400608	2.57507611739465	2.4674949116248	2.62198122772648	-1.8910958507616	0.0169720316153568	0.144723181661263
Merged-chr7-101843857-2	chr7	101843357	101844357	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	1474.0	NM_001303231	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	3.8249621822484	4.04541921702596	4.41969375226696	4.3941140958343	4.22774175786799	4.32039893110652	0.565299178204206	0.260954503338895	0.658521360261207
Merged-chr1-33503042-4	chr1	33502561	33503561	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	166733.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	5.05306489567191	5.3549098886303	5.45209595644685	4.97530278709549	5.38902156922917	5.71841402064413	0.190218069361428	0.633327420294534	0.896018020202716
Merged-chr3-105723779-2	chr3	105723279	105724279	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18321.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	3.48169803671268	3.60278350086051	3.85896613751376	3.34076528276432	3.35036838893148	3.88140235890174	-0.385896185842488	0.534712633549787	0.853068627162717
Merged-chr3-144203416-3	chr3	144202915	144203915	+	676.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	-1019.0	NM_001161769	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.25283396047191	4.56070752158896	4.43661193701204	4.69737703399984	4.69357542583144	5.07457108662802	0.982422063188054	0.0262579825382556	0.192405882144922
Merged-chr5-109551240-4	chr5	109550836	109551836	+	837.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7657.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	2.4414419925943	2.40822396837873	2.43604638521234	2.6341484618694	2.4809321329809	2.63726765226633	0.94411185491543	0.233235793275744	1
Merged-chr1-171607353-4	chr1	171606855	171607855	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102726)	promoter-TSS (NR_102726)	-21.0	NR_102726	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	5.65228349952247	5.65566048486504	5.61498959294001	6.0369897927503	5.90186374075733	5.6495850926338	0.430029208481716	0.173354806588674	0.552156549476131
Merged-chr6-32544311-4	chr6	32543803	32544803	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	33162.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.33822016075673	4.73761158370555	4.61676172652914	4.74224010851802	4.25977671064891	4.7214406279252	0.024056529771506	0.958584428860469	0.99015359851262
Merged-chr17-48317299-3	chr17	48316786	48317786	+	869.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177083, intron 2 of 5)	URR1A|DNA|hAT-Charlie	1124.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	6.36884986631834	6.65981391553571	6.95189880498955	6.91365289972703	6.86626284705585	6.85888813654251	0.324826803820076	0.24541863652015	0.642506808909437
Merged-chr11-50377625-4	chr11	50377115	50378115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-104.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	7.97186076285729	8.37224502452228	7.96788999462132	7.99448527040029	8.19199009742093	8.06108522155315	-0.051542988789144	0.827628555724631	0.959487786002189
Merged-chr4-133847388-3	chr4	133846939	133847939	+	692.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	27292.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.07208718171213	3.72108140526571	4.29152587759938	5.976776774452	6.02250392954893	5.63185590509343	4.72316202162478	4.95776987791522e-19	2.86476469445534e-16
Merged-chr4-129672617-5	chr4	129672059	129673059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008468, intron 1 of 13)	CpG	208.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	7.72543331116828	8.1172354019577	7.98966896746198	7.82597037592197	7.82238415747791	7.80326301217266	-0.196007611421633	0.392901373895918	0.771377884930667
Merged-chr19-3908915-2	chr19	3908415	3909415	+	716.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144870)	TTS (NM_144870)	-1782.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	7.02302882935166	7.04244932880162	6.76638558571846	6.92094873566384	7.0477643535002	6.22597376860185	-0.246197442297992	0.437728431498846	0.800178112574279
Merged-chr3-96251332-4	chr3	96250851	96251851	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4651.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	6.78639091405887	6.84725526206407	6.69270152671843	7.14145291725955	7.14619895085569	6.75175733308006	0.391584019288276	0.135031970596724	0.491179899865016
Merged-chr8-82773731-3	chr8	82773229	82774229	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	397.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	7.68298677366452	8.07252743668773	7.53433010282276	7.65183369192894	7.62799602809557	7.36369175975036	-0.33544166316289	0.196325016763968	0.584112516346026
Merged-chr8-69184287-4	chr8	69183786	69184786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24760.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	3.60563681962526	3.55902374034559	3.64252902413545	3.17682714251192	3.28894906344112	3.66190761536057	-0.809613109561031	0.188878817560213	0.574392870927155
Merged-chr7-28547576-7	chr7	28547008	28548008	+	815.128601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081115)	promoter-TSS (NM_001081115)	-254.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	2.7483352666484	2.60601593847923	2.89087869775445	2.5418553066004	2.43148027589941	2.84813472487399	-0.75160895798031	0.348365804431385	0.736259328771772
Merged-chr14-62243424-4	chr14	62242942	62243942	+	874.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49537.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.46223522313449	5.38379120165045	5.99997115333197	5.11120500293849	5.24240981024873	5.75851305572001	-0.462363283556273	0.249784003704684	0.646852801975018
Merged-chr17-35969887-4	chr17	35969405	35970405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013854)	promoter-TSS (NM_013854)	-155.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	8.04279665456719	8.08197272331686	7.72105707546058	7.81643669028279	7.9758525413929	7.65623034277859	-0.193709105280419	0.416159915028277	0.78703200622012
Merged-chr11-85310793-4	chr11	85310297	85311297	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-457.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	6.41124008960844	7.00388023995741	6.99433877121936	6.77863482452886	6.98075110884914	6.72085369428376	0.0116924049535766	0.968492809341969	0.992792165162521
Merged-chr17-69182295-4	chr17	69181804	69182804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22948.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	8.04788292325895	8.27958553216962	8.01041496752814	7.93455683092264	8.31801136646239	7.79078024964642	-0.109620399472339	0.660872169876412	0.906190308182195
Merged-chr11-94074529-4	chr11	94073998	94074998	+	876.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	Lx8|LINE|L1	30293.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	7.77417698156963	7.43650746153029	6.89619732234206	8.07190564268991	8.36640137582876	6.90493230027287	0.721345505185093	0.298224490934941	0.69500092474273
Merged-chr10-10130593-2	chr10	10130093	10131093	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-229553.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	2.75917852018711	3.02223414468264	3.03142954217816	2.67850682861668	2.73656755976321	3.26433168911014	-0.119089857180652	0.877509586934697	0.971635702815161
Merged-chr4-136035268-4	chr4	136034793	136035793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-13644.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	5.92113634268972	5.94780110089035	5.82808550658835	5.38693304926026	5.65074744226819	5.54039687733755	-0.670108850208478	0.0346409207425853	0.228146409145879
Merged-chr7-97400451-2	chr7	97399951	97400951	+	732.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024220, intron 1 of 2)	intron (NM_024220, intron 1 of 2)	448.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	6.00314744494836	6.23689205274312	5.64275915262234	5.89471976024789	6.34571069793743	5.73324078640333	0.068550248795764	0.848655475596734	0.964356989789491
Merged-chr18-54990444-6	chr18	54990018	54991018	+	990.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175751)	promoter-TSS (NM_175751)	-338.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.67531995167409	7.90972953325519	7.24843233803201	7.69828635387615	7.95849467048818	7.50220407017441	0.130955096624829	0.638603779255747	0.89762898904188
Merged-chr17-31060823-4	chr17	31060313	31061313	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	3119.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.37828532282961	7.14501031149151	7.03623408654847	7.17472550635629	7.12925945229044	6.33185619071776	-0.380447682102706	0.234714538224284	0.63079769053216
Merged-chr10-99263929-3	chr10	99263484	99264484	+	995.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026268, exon 1 of 3)	exon (NM_026268, exon 1 of 3)	753.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.78760505441202	8.26255599606731	7.70539470854599	8.01622509664366	8.22061333251486	8.19328674710619	0.277133643970846	0.275027847117645	0.672401372506524
Merged-chr10-20313560-2	chr10	20313060	20314060	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	intron (NM_001025392, intron 1 of 12)	1091.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	5.93836363373963	6.05485873007778	5.74104065150513	6.14906229568392	6.20026528510818	5.98348011021039	0.332489022981244	0.268767467572704	0.665965177167973
Merged-chr4-49597374-6	chr4	49596824	49597824	+	923.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149725, exon 1 of 3)	non-coding (NR_149725, exon 1 of 3)	146.0	NR_149725	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	2.60046312731112	2.52726882761145	2.74384624441799	2.5597627052082	2.451988733285	2.57139643388564	-0.565449606451061	0.466863672860903	1
Merged-chr13-60896570-2	chr13	60896070	60897070	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007797, intron 2 of 4)	intron (NM_007797, intron 2 of 4)	877.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	6.67328544510321	7.21133988553958	6.91741977419705	7.42727943902524	7.69800251404344	7.27630169785265	0.788474831637895	0.00474354580410841	0.059104665958109
Merged-chr6-99522153-4	chr6	99521652	99522652	+	940.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-12329	-1159.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.97665439862485	6.21131435880872	6.36431137436222	6.27007637427788	6.61350171191008	5.84224481144588	0.178883491575856	0.59754442416762	0.880433364120803
Merged-chr11-5008154-1	chr11	5007654	5008654	+	610.0	f0_balb.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	21330.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	3.89950010934897	3.98257469424388	4.20245062352682	3.47943598822236	3.50386964351606	3.60384057549799	-1.69472710079016	0.00241526005938255	0.0357341676780056
Merged-chr8-40031539-4	chr8	40031068	40032068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255385.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	4.11182306358798	3.9465883292153	4.29171625489159	3.614231514504	3.65861675228036	3.81439999055439	-1.34185590279921	0.0118029400248257	0.112875949560505
Merged-chr6-97392962-2	chr6	97392462	97393462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	RCHARR1|DNA|hAT-Charlie	66324.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.3227731276228	4.37623428829683	4.53540716810677	4.05701053347598	3.8918236241579	4.08560817771625	-1.13013968652281	0.0174309402330127	0.14737202347627
Merged-chr3-19163170-4	chr3	19162672	19163672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028840)	promoter-TSS (NM_028840)	-77.0	NM_001357689	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	6.34875216144026	6.12840999002593	6.3106311654699	6.35476091289824	6.37565814728061	6.31171193945137	0.143446296841584	0.602181480611351	0.88225227970428
Merged-chr12-100007566-2	chr12	100007066	100008066	+	792.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	43067.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.41391489540474	5.61235905418389	5.042927372698	5.17808467135668	4.93974869734518	4.74206886352474	-0.853446719110416	0.0332760677777644	0.222580335719478
Merged-chr7-98712242-1	chr7	98711742	98712742	+	636.5	f0_balb.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8995.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	6.34964966775385	6.36742072661825	5.559902417308	5.92713190714809	5.81358666920824	5.6555158946094	-0.605822172365707	0.0935128887634604	0.407274138093662
Merged-chr9-22368263-5	chr9	22367732	22368732	+	773.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	20974.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	5.88228573585208	5.98056504921553	5.98961673209363	6.14193355527085	6.15696004949274	6.18133248225253	0.360390098527463	0.205224558017984	0.595845110560745
Merged-chr4-3080894-1	chr4	3080394	3081394	+	657.0	f1_balb.idr	Intergenic	Intergenic	-91189.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	2.60508971591628	2.69781454234987	2.71390101948608	2.4347347414549	2.39743469585107	2.40451821149662	-1.62552931071919	0.0473334931621811	1
Merged-chr13-60613791-3	chr13	60613286	60614286	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	11575.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.19160961911022	4.40156847131255	4.29344123257831	4.08787046042712	4.01456367924362	4.22755799388088	-0.541311361569829	0.249467672511033	0.646365357085824
Merged-chr19-40679177-4	chr19	40678681	40679681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	HAL1|LINE|L1	19411.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.83437113177442	7.82039072290584	7.59719004773087	7.79468206177515	7.9825262079241	7.34029929869187	-0.0209180679777586	0.936720330657076	0.986037792257163
Merged-chr1-132011010-5	chr1	132010473	132011473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	3368.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	6.55697486419047	6.54698364072821	5.99610261922854	6.47992845093044	6.56514931087041	6.5581511910781	0.205802575966729	0.491229931257226	0.830448151501811
Merged-chr7-97121190-1	chr7	97120690	97121690	+	597.0	f1_balb.idr	intron (NM_001162477, intron 1 of 9)	L1Md_F2|LINE|L1	39439.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.82642109780721	5.1287278021547	5.32433606310144	5.34716520496298	5.30506542768585	5.55429679599797	0.607952608409376	0.103708195596952	0.42934834114604
Merged-chr17-74802922-3	chr17	74802428	74803428	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152817, intron 13 of 19)	L1MB2|LINE|L1	85178.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.9641213427175	3.97238730637253	4.40945314617097	5.86907339485502	6.24108310721018	5.83815123796993	4.60433002722386	1.26125864891647e-20	9.2058604964072e-18
Merged-chr11-118470432-4	chr11	118469916	118470916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6416.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	6.83350287453519	6.78056349061143	6.98105299702743	6.17302258081618	6.11159962611391	6.41445492721366	-1.02174284719789	0.000162623281030369	0.00423920988971647
Merged-chr2-75964645-4	chr2	75964145	75965145	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13534.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	5.23200713309984	5.26109216525388	4.636768528037	5.12582198937278	4.96242630962752	4.87755479742789	-0.195854735559299	0.638047899004936	0.897380718500389
Merged-chr14-44835287-4	chr14	44834781	44835781	+	846.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24094.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	3.17946932458633	3.45511467715423	3.4381902278209	2.82063861026282	2.94974160776128	3.12395914545423	-1.78858082848567	0.0110230177624501	0.107640331179198
Merged-chr19-47467221-2	chr19	47466721	47467721	+	871.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2810.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.37480197755144	2.46161716348195	2.52062394645626	2.39841618900245	2.13670377387379	2.40423370659409	-0.902234402317305	0.29879594621105	1
Merged-chr7-129990978-2	chr7	129990478	129991478	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28813.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	3.57978187626228	3.48695460151739	3.56691367719347	3.43055623162414	3.20170652435991	3.87853169457698	-0.0621361397907731	0.921529405822783	0.982542868764899
Merged-chr8-109682317-4	chr8	109681823	109682823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 3 of 10)	intron (NR_155034, intron 3 of 10)	10971.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.99062639240582	7.19880298991318	6.92874170321612	7.01561378214329	7.26188953671473	7.2671228924373	0.205468554621162	0.412262724248791	0.784379401712255
Merged-chr19-55469361-3	chr19	55468872	55469872	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	153315.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	4.88245484828404	4.87025601343688	4.39462089517728	3.66444396572305	3.43746395338896	3.66909481808548	-3.81275326066844	5.95526472958859e-10	6.7510308940001e-08
Merged-chr12-79137100-3	chr12	79136593	79137593	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	L2b|LINE|L2	6305.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	6.28464915823946	6.43306410806606	6.55647741110415	5.47406719307325	5.81436093528476	5.52456489098083	-1.37953549350051	1.45787460424994e-05	0.000554672291131362
Merged-chr18-60523481-4	chr18	60522986	60523986	+	954.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2668.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	5.94560856876898	6.46561602367714	6.68338071652382	5.80523310236587	5.54188459254917	6.06367134301445	-0.998937405556419	0.0046489951736955	0.0582416582425732
Merged-chr17-23592753-4	chr17	23592253	23593253	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011747, intron 1 of 5)	CpG	-6501.0	NM_001356268	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	2.31706979751981	1.99137164730057	2.12109430938792	2.31594075344722	2.16990118499442	2.46108381951969	1.14573099564999	0.224386204685673	1
Merged-chr12-12274410-2	chr12	12273910	12274910	+	614.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	12271.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.42659725719474	4.4323900780792	4.50209868501373	4.40605124168885	4.38799769171673	4.56809826017386	-0.00383118888599098	0.99289066931517	0.998605548488759
Merged-chr7-102142189-1	chr7	102141689	102142689	+	688.0	f0_balb.idr	intron (NM_001287164, intron 20 of 32)	intron (NM_001287164, intron 20 of 32)	-25476.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	3.80208609210284	3.53811515112561	3.87223490311781	3.49733681739592	3.67922019909904	3.64131437026454	-0.441349047333089	0.433401966553445	0.797815674529737
Merged-chr11-50915832-3	chr11	50915326	50916326	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294323, intron 1 of 5)	CpG	350.0	NM_178447	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	5.34691414171732	5.60110001099087	5.15322890857857	5.09522179703448	4.72291683845279	5.07897750095279	-0.872641730233619	0.0242840619463287	0.183459980609235
Merged-chr8-70645411-4	chr8	70644907	70645907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12951.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.59679180300965	7.26266551277674	6.55241399538247	8.06076492146224	8.53117360465525	7.43771921534216	1.26556395991625	0.046145551411497	0.271681811494222
Merged-chr3-54360298-4	chr3	54359757	54360757	+	781.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	-850.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	3.99367276039711	4.0717736764755	4.39223063610648	4.36078481086498	4.43877641957145	4.45871581070364	0.722038005917313	0.122335584156342	0.467799120431176
Merged-chr7-4150968-4	chr7	4150482	4151482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021454)	TTS (NM_021454)	-1110.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	5.9067483841212	5.73311983466418	5.99920875585213	5.64349432642614	5.68351335155342	5.77841730954513	-0.321544033130488	0.29965991008557	0.696379589028967
Merged-chr15-39945183-4	chr15	39944681	39945681	+	973.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1187.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	7.34415501067434	7.41836935954873	7.15998326255078	6.7845350955798	7.49659568089939	6.80636410940866	-0.336291022550667	0.269378039953133	0.666460750131431
Merged-chr4-102290453-3	chr4	102289967	102290967	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	35528.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.89947341596209	2.91374077084087	2.94296297901677	2.99847503238862	2.95488668661205	3.0153859083135	0.335554677934238	0.617852021085254	0.889003221204315
Merged-chr6-33263212-4	chr6	33262704	33263704	+	912.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 1 of 9)	B1F|SINE|Alu	14076.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	4.96236330260197	5.50479081392917	4.52879456023246	5.43716584336624	5.5571811265282	5.04512675194347	0.590055720998419	0.212726015564112	0.605304269070836
Merged-chr11-63906724-4	chr11	63906275	63907275	+	920.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	15509.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	5.2450137046184	5.37877329717099	5.41414596375334	5.70767654413909	5.78517909644518	6.02806847619717	0.927197066982007	0.00478053470837385	0.0593256871013231
Merged-chr11-107015235-2	chr11	107014735	107015735	+	982.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12988.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	3.73047126306898	3.77345216323364	3.80522569917984	3.88561738608082	3.43879866904171	3.61182812557049	-0.375776088930455	0.50596331353186	0.838203647443267
Merged-chr9-95564397-7	chr9	95563883	95564883	+	927.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4566.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.11517773878212	7.2845223924886	7.20368113140825	7.31629149157354	7.64305984176272	7.1874059741419	0.302858346927784	0.233328519511267	0.629682827928185
Merged-chr12-76944897-3	chr12	76944405	76945405	+	582.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	17343.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.81602148023385	5.39548116619001	5.21666511202825	5.33353021116341	5.45759229858318	5.1105812510065	0.300851103946383	0.444116679011449	0.804030822375159
Merged-chr7-118112746-1	chr7	118112246	118113246	+	598.0	f1_balb.idr	intron (NM_170669, intron 3 of 4)	ORR1A2-int|LTR|ERVL-MaLR	3401.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	3.54076168356851	3.76839473549226	3.98963963786038	3.86392903462529	3.41443431859594	4.01258098085306	0.0260497513435358	0.965239112581598	0.991840962282624
Merged-chr2-144274956-1	chr2	144274456	144275456	+	887.0	f0_balb.idr	intron (NM_001355688, intron 2 of 4)	intron (NM_001355688, intron 2 of 4)	4052.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	2.94058657584033	3.20288452198895	3.31007483905378	3.30558761718429	3.20250251897385	3.21286850729452	0.356710551976239	0.584893447976377	0.874754719025748
Merged-chr6-65042160-2	chr6	65041660	65042660	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	-431.0	NM_001355250	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	5.89482751244988	5.93893730352353	5.57604185332327	5.72808315407496	5.51485390434497	5.39089295863818	-0.488768185152112	0.142877776605274	0.504544159732276
Merged-chr8-46953617-3	chr8	46953117	46954117	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33270.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.32976521350731	3.4106425781589	3.34077220943588	3.63341178039985	3.5635632618009	3.41346867764168	0.679494771331196	0.246652032590443	0.643775908190167
Merged-chr7-4147122-2	chr7	4146622	4147622	+	686.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	2750.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	2.69321422971586	2.61770985632643	3.13362425713922	2.7669092019149	2.64017261383697	3.15170483465798	0.175306094331447	0.825216114141886	0.958767231536338
Merged-chr15-79440068-2	chr15	79439568	79440568	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	1750.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	2.83441084238851	3.07680684476821	3.11933225784021	2.96055307198704	2.80486233861686	2.95920668901533	-0.50794723938499	0.467129579945517	0.817793727789488
Merged-chr17-87303700-4	chr17	87303192	87304192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	20806.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	7.32280935721179	7.71767367493335	7.41479668482662	7.26704423426434	7.66985447193469	7.1274725674981	-0.165439139054708	0.547526679714084	0.859353012650183
Merged-chr17-48410556-2	chr17	48410056	48411056	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010913)	promoter-TSS (NM_010913)	106.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	7.08591978716497	7.29152277456879	7.49121372253651	7.19256149191444	7.57118018129574	7.47948107156719	0.195997780537326	0.447396937546681	0.806404141026781
Merged-chr13-92530778-4	chr13	92530236	92531236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173392)	promoter-TSS (NM_173392)	74.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	8.3430590759503	8.5942154828461	8.27241215811658	8.35704653162488	8.67708054431293	8.25722611524258	0.0488826940702243	0.835954186869646	0.961873866737315
Merged-chr11-98783490-4	chr11	98783021	98784021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8144.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	7.81094816484447	7.57921301258006	7.48542574164258	7.55526095843217	7.89705304269251	7.63146521968321	0.10358918609608	0.670963303097471	0.910268770875946
Merged-chr5-139377658-4	chr5	139377149	139378149	+	890.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-48.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	6.77890036838852	6.59165788742873	6.65479128115667	6.63855171839832	6.60029892886492	6.28670831376017	-0.239084489209058	0.380170021270716	0.762318949534744
Merged-chr18-44759843-4	chr18	44759333	44760333	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	52349.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	6.26273663728541	6.62083311779537	6.22077146701177	6.51217320686255	6.80603862434961	6.44336341482343	0.348238476041578	0.239475450599176	0.636359120505658
Merged-chr4-4793326-4	chr4	4792805	4793805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177730)	promoter-TSS (NM_177730)	1.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	6.95718147981456	7.16714398773627	6.85988570111637	7.07937617473021	6.60507000510817	6.88896909853855	-0.212700358644227	0.438592899846297	0.800615097962194
Merged-chr7-42980314-4	chr7	42979801	42980801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-38497.0	NM_001105061	668612.0	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	3.29040451692825	3.32509655518722	3.55479925911159	3.52669542363197	3.37629731071861	3.57299699497132	0.384344560343528	0.51723012608363	0.844527100635531
Merged-chr6-134319742-3	chr6	134319242	134320242	+	974.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	-76587.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.45772748871812	3.59132835634173	3.94333841592385	3.36418570454442	3.56183782092675	3.64898828002029	-1.69497880773996	0.00725403604071269	0.0802011468078157
Merged-chr18-82878061-3	chr18	82877558	82878558	+	776.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22161.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	2.74781584933064	2.72349975665612	2.37973576614542	2.58474452566548	2.41701766299845	2.78227573654729	-0.152921274525308	0.857940218464179	1
Merged-chr7-105399160-4	chr7	105398667	105399667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242363, intron 1 of 12)	intron (NM_001242363, intron 1 of 12)	887.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	7.1242494879815	7.06520363926276	6.85931601358301	6.95466902392542	7.23347963861033	7.25713857169238	0.192372777161806	0.447456479672872	0.806462597973018
Merged-chr17-34171155-5	chr17	34170678	34171678	+	861.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	16152.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	3.866591976511	4.13257360888245	3.80956447235477	4.25358010477574	4.16472197310514	4.22986670201829	0.752474302347822	0.132442169364892	0.486975166969241
Merged-chr12-117639554-2	chr12	117639054	117640054	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 9 of 27)	intron (NM_175930, intron 9 of 27)	123075.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	3.14910295668854	3.00809828574264	3.10688751652345	3.09910565555945	2.8356716682714	3.2901508962078	-0.0337091348499815	0.960955151788583	0.990386809359123
Merged-chr19-34526383-4	chr19	34525928	34526928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1046.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	7.99413204007716	8.06547706760925	7.67901375909686	8.12288461428142	8.3897371499704	7.96783302433275	0.351255994331563	0.151597002026595	0.519079091424247
Merged-chr13-113606877-2	chr13	113606377	113607377	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	11687.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.30983837906338	4.13935368081938	4.31329428183971	4.379834193249	4.30346601488841	4.73398270540434	0.576062578672878	0.21391584785463	0.607060454009152
Merged-chr16-85138741-3	chr16	85138238	85139238	+	913.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34969.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.06519458420393	5.29146789623911	5.1673824201604	4.95294474361101	4.99243330938779	4.99095012554242	-0.423600900486665	0.246614066715241	0.643759270156384
Merged-chr15-83171893-4	chr15	83171402	83172402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	CpG	306.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	8.49561829860531	8.67874525597401	8.01886556739713	8.18410120021838	8.47148451442122	8.1339535164335	-0.22023789781795	0.398602812993591	0.775273667788888
Merged-chr3-79248982-1	chr3	79248482	79249482	+	936.0	f1_balb.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	36063.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	3.17674423928907	3.35892160936989	3.36943148795518	3.53736939637466	3.6385017867809	3.38404356258224	0.884749975073694	0.143494663528053	0.505668717539688
Merged-chr4-8536161-4	chr4	8535678	8536678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021518, intron 1 of 7)	CpG	534.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	8.22123251940016	8.39243376671141	8.15131537668421	8.25711499896791	8.01996681938208	8.20051903487365	-0.143365479693816	0.510428969485644	0.840886591313675
Merged-chr5-114931556-2	chr5	114931057	114932057	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359946, intron 2 of 4)	MTC|LTR|ERVL-MaLR	8317.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	1.99730656416304	2.01664066683721	2.06447192400111	2.30744937114585	2.2030163346286	2.40574152370253	2.19705505233435	0.0212914133508908	1
Merged-chr13-94468201-2	chr13	94467701	94468701	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 15 of 26)	ID4|SINE|ID	109241.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	3.42604860633689	3.50131534381357	3.63229566391211	3.48726877785842	3.51210633530595	3.70102556569805	0.171475599858682	0.763590795737325	0.941793063578371
Merged-chr10-81303058-2	chr10	81302558	81303558	+	690.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10095.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	3.63491506495162	3.70420961031756	3.3252418372013	3.32134808313294	3.08667599478383	3.51176563511261	-0.99415378991985	0.122339228792666	0.467799120431176
Merged-chr7-104366516-4	chr7	104366026	104367026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7880.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	4.79788470485319	4.95492366597936	5.36790357183807	4.9717487954571	5.02341197764324	5.28787468930481	0.094751322918695	0.813654934576342	0.955940138311315
Merged-chr8-39426913-1	chr8	39426413	39427413	+	640.0	f0_balb.idr	Intergenic	Intergenic	128933.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.73626994156916	3.80251084539452	3.65733696688813	2.98156004968453	3.06989448998935	3.02194676697827	-3.16103443048805	2.09276834442114e-05	0.000758167650302841
Merged-chr13-47214291-1	chr13	47213791	47214791	+	722.0	f0_balb.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	20288.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.63227047544627	6.25724711858709	6.27778210601706	5.59485137779271	5.57807518888588	5.78211717343032	-0.774736300058798	0.0263148368495716	0.192611272394366
Merged-chr6-15793727-4	chr6	15793193	15794193	+	943.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	73032.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.31220615738943	5.58343644625897	5.52651525478069	5.91869450801427	6.05820591303	5.40295367214008	0.659682488133123	0.0645151702275627	0.331042074759191
Merged-chr2-167777690-8	chr2	167777137	167778137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	86460.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	9.16484757625841	9.19033178331541	8.21980929417379	8.83636941016195	9.15382545599361	8.31662576747784	-0.161275446349573	0.757857864096541	0.939957028913442
Merged-chr8-82402078-2	chr8	82401573	82402573	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	513.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.76956279139188	6.9574400663108	6.96371192756253	7.7202697245593	7.74832714210726	7.32698445196333	1.07609515886121	2.09343682116274e-05	0.000758167650302841
Merged-chr8-19161737-4	chr8	19161234	19162234	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3847.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	5.26674946354432	5.77489650555961	5.57836440811734	6.17005808739333	6.29784559402172	5.70002123419418	0.945879192994184	0.00798021182123733	0.08593470495943
Merged-chr11-101972292-4	chr11	101971806	101972806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5291.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	7.23724409390008	7.37745326634338	7.07727605563863	7.20451806614082	7.39255511857152	7.22313919863845	0.0557643017995836	0.818302510595738	0.956901952072209
Merged-chr12-70825376-4	chr12	70824820	70825820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028127)	promoter-TSS (NM_028127)	-194.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	6.18598508310488	5.78652679102101	6.05869556477111	5.99704564189128	5.5263056916673	5.67970733989431	-0.482013644924194	0.151160449661313	0.518506648409409
Merged-chr4-127015768-4	chr4	127015278	127016278	+	971.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5523.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	3.6774498919975	3.70347420934089	3.98705985373788	5.52382811767549	5.80004785918854	5.35623815224988	5.29132777447916	1.53061970488561e-16	5.71120199121622e-14
Merged-chr2-166770910-2	chr2	166770410	166771410	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-22857.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	6.55556882324879	6.31927651355617	6.03151657034694	6.24819064322322	6.28683657676653	6.06927948273961	-0.199173578823104	0.510339544334681	0.840886591313675
Merged-chr2-128757652-1	chr2	128757152	128758152	+	543.0	f1_balb.idr	intron (NM_008587, intron 6 of 18)	Lx8|LINE|L1	58737.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.62495381152642	3.67347316417112	3.81411923183501	3.51979303050902	3.21970372428606	3.68751769344598	-0.796177905930232	0.183825467030652	0.567244140856875
Merged-chr12-80643832-4	chr12	80643339	80644339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026244)	promoter-TSS (NM_026244)	272.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	7.54498282565547	7.68760645191021	7.60082385648746	7.51789074113226	7.49034154588631	7.40588490006744	-0.202663199771108	0.361638794767825	0.747458707295016
Merged-chr11-83686468-4	chr11	83685967	83686967	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-17589.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	4.72173062635948	4.48002224606073	5.09408977198965	5.09882260665067	5.16840704082438	5.44906714163765	1.00127407787378	0.0159134523845461	0.138521450571536
Merged-chr16-94569513-4	chr16	94569005	94570005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007890)	promoter-TSS (NM_007890)	-701.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	8.46340168713378	8.4853438566823	7.91135144226406	8.149982572559	8.26078312087571	8.00725616341528	-0.243707774414078	0.333215084070207	0.724147532263732
Merged-chr3-88604891-2	chr3	88604391	88605391	+	971.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-11316.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.0178477002926	5.09513808764636	5.31419105685322	5.14567221798045	5.26075713453478	5.22286024757584	0.152021598060432	0.672255889878529	0.910756996322765
Merged-chr11-6524605-4	chr11	6524102	6525102	+	860.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045893)	TTS (NR_045893)	-3644.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	4.89293970218576	4.79427610942343	5.2036082898128	5.13413848096243	5.16001529630019	5.00138686672917	0.305958007682303	0.42386219512934	0.792272050905538
Merged-chr9-57431502-3	chr9	57431030	57432030	+	929.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	8206.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	4.01500485751002	4.09151521810114	3.99275450689213	4.24269244750228	4.37893533927856	3.90452103855379	0.471022854618461	0.347258030765288	0.735382424511812
Merged-chr11-97840688-3	chr11	97840196	97841196	+	786.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080935)	promoter-TSS (NM_001080935)	-84.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	3.90459246675887	3.86529258644263	4.03478354006308	4.92741219399968	4.64820632684635	4.10836065401666	1.83431324521627	0.000362343853595619	0.00812885073334708
Merged-chr9-121277305-2	chr9	121276805	121277805	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-133.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	5.41537295799269	5.70777102591107	5.74726517281242	5.5357257727887	5.52003789404977	5.65536625632362	-0.112189578871254	0.733664414518935	0.932175155100531
Merged-chr9-90107928-1	chr9	90107428	90108428	+	543.0	f1_balb.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	6892.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	6.29043282204214	6.31615690337208	6.26311554755686	6.91920631862543	7.09806418976947	6.59388760900951	0.965459563447701	0.000518820727852466	0.0107881509933244
Merged-chr19-5811301-5	chr19	5810895	5811895	+	717.450012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8723.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	5.19024561789914	5.29740278842627	4.86988893354939	4.75432121618155	4.51958455827199	4.51133217071602	-1.21324400497967	0.00308892342428502	0.0430524523095323
Merged-chr15-90649534-3	chr15	90649034	90650034	+	854.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	29854.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	3.01614236211065	2.7187311404679	2.85259387754831	2.40054621729828	2.55048928653866	2.68008907561775	-1.85606082177092	0.0256014155984776	0.189658350170773
Merged-chr2-166155249-2	chr2	166154749	166155749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252578)	promoter-TSS (NM_001252578)	36.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.42198817325202	4.2296066197122	3.90840301756364	4.15498427857599	3.94730590652552	3.69210866648792	-0.746831983800065	0.171689241727472	0.549993736344744
Merged-chr10-23176325-2	chr10	23175825	23176825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	MTC|LTR|ERVL-MaLR	173565.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	2.40675368069575	2.58085970236533	2.64565402229594	2.46638501251214	2.42000666198317	2.26277706839127	-0.971828572354981	0.253801301920155	1
Merged-chr5-102027409-3	chr5	102026901	102027901	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	42520.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.13790810875416	5.10575858410641	5.41397848686232	5.45885962045442	5.11416232580831	5.2988572310185	0.157432076905258	0.666730581141781	0.908367417591988
Merged-chr5-129995941-1	chr5	129995441	129996441	+	1000.0	f1_balb.idr	intron (NM_001357025, intron 7 of 10)	intron (NM_001357025, intron 7 of 10)	7108.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	3.72127302291901	3.53940282144264	3.59725596551358	3.18318184160552	3.06910062719473	3.09030044862139	-2.13080290233855	0.00110265688747304	0.0194187569724042
Merged-chr4-135982207-4	chr4	135981682	135982682	+	888.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5062.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	7.12158268541873	7.10438368737352	6.91874664017251	7.10738595031612	7.31755053103029	7.15123287857235	0.215379408342998	0.376046373121182	0.758951282467405
Merged-chr17-33950808-2	chr17	33950316	33951316	+	621.5	f0_balb.idr|f0_c57.idr	exon (NM_019420, exon 1 of 1)	exon (NM_019420, exon 1 of 1)	672.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	6.21216213034689	6.34353793149715	6.34946610313487	5.51733121432868	5.74347637883318	6.16064671244798	-0.82525140495435	0.0108110177785768	0.106171995956492
Merged-chr1-86360387-2	chr1	86359887	86360887	+	748.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010880)	promoter-TSS (NM_010880)	813.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	6.53781427627104	6.50159969951624	6.28201848768824	6.340610116955	6.18409776537389	6.12850794397231	-0.380553955975726	0.173266061696982	0.551957215225209
Merged-chr12-87444653-3	chr12	87444142	87445142	+	841.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013372)	promoter-TSS (NM_001013372)	-625.0	NM_001013372	654309.0	Mm.442579	NM_001013372	ENSMUSG00000079036	Nrp	-	neural regeneration protein	protein-coding	5.79504726814291	5.68198340402028	5.57440815444635	5.86459622796186	5.90241390228731	5.20602218665778	0.0360430097037106	0.921333687854279	0.982526400261012
Merged-chr15-4727828-1	chr15	4727328	4728328	+	750.0	f0_balb.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	618.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	7.05669351535802	7.36838798437266	7.1554369324294	7.37701045324034	7.58794411794971	6.99968964070648	0.228801069425754	0.402454015696465	0.778034751471189
Merged-chr8-83699816-3	chr8	83699313	83700313	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-634.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	5.87714771201535	5.60028063715781	5.62818233913904	5.87303633031759	5.9031752154753	5.44958984013561	0.107248453676741	0.750381914954261	0.937550343416037
Merged-chr1-149862878-2	chr1	149862378	149863378	+	621.325012	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 12 of 17)	intron (NM_008869, intron 12 of 17)	59561.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	3.46289484516268	3.5131961071211	3.72302514981277	3.60309873917183	3.58974827163512	3.69199183662642	0.219887883302577	0.69444791141003	0.919210273513843
Merged-chr2-27025752-4	chr2	27025251	27026251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177627, intron 3 of 8)	L2|LINE|L2	2247.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	4.72001617440394	4.51609377752636	4.7968005373077	4.78982386308579	4.88951631922292	4.70794902378239	0.297288596224547	0.463036476222661	0.815604460584161
Merged-chr5-101946997-1	chr5	101946497	101947497	+	600.0	f1_balb.idr	intron (NM_172882, intron 10 of 66)	RSINE1|SINE|B4	122924.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.65364596327013	3.56487968216902	3.78109418889327	4.21071315819857	4.09272336981476	4.0042980411643	1.41178373269375	0.00670775876237472	0.0757517903229745
Merged-chr1-165457635-4	chr1	165457129	165458129	+	676.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028759, intron 1 of 18)	intron (NM_028759, intron 1 of 18)	2834.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	3.20603675379545	3.00945989031465	3.01736761495589	3.24814646496185	2.97935321244958	3.26640773024023	0.358766552541324	0.591301620580051	0.877539822805302
Merged-chr18-64847114-4	chr18	64846596	64847596	+	859.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40660.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.859727257845	3.0328382573867	3.12865935415423	2.97889666455069	3.08673349002854	3.14349221076411	0.283761077911244	0.673030251066138	0.911112033363885
Merged-chr14-32785919-4	chr14	32785407	32786407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163616)	promoter-TSS (NM_001163616)	-56.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	6.05643058625943	6.01172886142832	6.20709861989323	6.35282971959045	6.26274454812721	6.05031544682954	0.249195813593341	0.388304271455656	0.768207085743414
Merged-chr16-91740375-3	chr16	91739877	91740877	+	955.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11006.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.86134666820728	5.96089816284295	5.66740146418964	5.63007500150434	5.77979782355895	5.90815259650852	-0.128287659370774	0.683693865833664	0.915479407206029
Merged-chr8-120747880-2	chr8	120747380	120748380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 5 of 8)	intron (NM_001301811, intron 5 of 8)	9241.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.73344203017016	4.34780363653767	5.00899433714289	4.74193349527108	4.58090713109117	4.76237220715972	-0.0481427591759557	0.914152826749188	0.980894573251353
Merged-chr12-102461797-1	chr12	102461297	102462297	+	657.0	f1_balb.idr	Intergenic	Intergenic	-7337.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.01045149553803	2.69387814166194	2.67563755485952	2.84343227975131	2.9779776156653	3.00143332013381	0.657375235275761	0.377428746935259	0.759861872126518
Merged-chr3-88618319-4	chr3	88617822	88618822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198911, intron 2 of 22)	intron (NM_001198911, intron 2 of 22)	2115.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.8956913309049	5.52990708336386	5.8533287271935	5.65020465674884	5.55469255533535	6.10556074882843	0.0272038301435928	0.938120076227353	0.986279451858875
Merged-chr3-95142390-4	chr3	95141871	95142871	+	881.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-11.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	6.40046554552653	6.53785841341086	6.29237517606901	6.77304598516679	6.89114519117984	6.68368733761496	0.587171050250571	0.0267593917079066	0.194751636948438
Merged-chr10-93272080-3	chr10	93271595	93272595	+	700.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39064.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.56147692771973	3.8865276657738	4.31341603433837	3.37215519110135	3.24669344201614	3.88338380558432	-1.40552247172505	0.0339052984904824	0.225258719154291
Merged-chr3-95106921-4	chr3	95106416	95107416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008847)	promoter-TSS (NM_008847)	14.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	6.38702474309807	6.53101800924833	6.21136792441652	6.82062153333086	6.83902395182145	6.56810829993274	0.57817594432156	0.0353774608916146	0.230895581290255
Merged-chr8-69920462-4	chr8	69919982	69920982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-17924.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	7.9026262054504	8.18663864015992	7.55093661172264	8.03572399179555	8.34803452223523	7.67822517129932	0.204335277610043	0.477711107096649	0.82334367205141
Merged-chr11-53850112-4	chr11	53849613	53850613	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	9143.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	3.15329812842516	3.2532139591572	3.31137582510956	3.48376028518595	3.55637571998021	3.26632061078192	0.829531393793604	0.178188493005775	0.559276830911593
Merged-chr15-88523630-4	chr15	88523130	88524130	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76672.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.57454646660729	3.26233706589872	3.33172834706462	3.78272306265702	3.47314840035454	3.68301404895223	0.900173810685921	0.136222956874274	0.493146752362964
Merged-chr9-124275208-4	chr9	124274698	124275698	+	878.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37496.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	5.33513767193135	5.30540027552594	5.32562193828694	5.74852671369338	5.82794323510218	5.35758135255564	0.670509255436822	0.0507771868341425	0.287009589164821
Merged-chr11-75153834-1	chr11	75153334	75154334	+	983.0	f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14318.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.42153506333194	7.22960917808948	7.01572603648076	7.28316345434621	7.3566216686804	7.08741871116893	0.0193687478793877	0.939125829872223	0.986604659958455
Merged-chr19-6157381-4	chr19	6156873	6157873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7066.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	6.04124070001365	6.41097432289083	6.08574774069549	6.1079477424079	6.40503367395209	5.95689850701191	-0.0216620773505192	0.945191474799655	0.987875414328125
Merged-chr16-78235917-4	chr16	78235414	78236414	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	19540.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.75682346250463	4.34150779415685	4.04236790007721	4.09723893577715	4.42074954427313	4.31332084796207	-0.351305966341632	0.492859846456156	0.831208279358962
Merged-chr6-88045239-4	chr6	88044715	88045715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293652)	promoter-TSS (NM_001293652)	55.0	NM_001293652	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	8.4504143078448	8.42140176387665	8.02012282479971	8.18030082718661	7.98640352481144	7.93610258627239	-0.391515588061099	0.0968644518920187	0.414902569393138
Merged-chr10-96373699-4	chr10	96373211	96374211	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	147504.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.52313005980056	7.47237480674411	7.4556413136515	7.32423953291898	7.41780173932883	7.32989220939894	-0.183319300628138	0.412164286479716	0.784340123865907
Merged-chr7-116530006-4	chr7	116529487	116530487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 11 of 14)	ORR1B2|LTR|ERVL-MaLR	25618.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.95987416044727	3.9565644118274	4.35822662039624	3.92109548638879	3.98351355936171	4.17439122411339	-0.200769603089728	0.69321649549335	0.91884092896984
Merged-chr6-146222195-4	chr6	146221694	146222694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280029.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	5.90135025256787	5.93090151652103	5.52880776949393	5.6690597838499	5.22300627748717	5.23335383220801	-0.773695329608073	0.0310147950912063	0.213194074973539
Merged-chr6-137386532-4	chr6	137386017	137387017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-24204.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.40019493099097	4.51233433937198	4.7469234139983	4.52073358847501	4.58612111756907	4.81149609404154	0.210294180930548	0.624409932580557	0.892008063560811
Merged-chr7-16845452-5	chr7	16844893	16845893	+	905.23999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	2328.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	4.22797230588356	4.30915901545289	4.24975537600293	4.49940687374924	4.50602700134853	4.22330442513641	0.421890599317167	0.350402881299198	0.738377768560379
Merged-chr2-128771245-4	chr2	128770751	128771751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47052.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.96823616942825	4.82009137176436	4.77537543471229	4.96964031493345	4.92257587634862	4.88015503567993	0.142418554707572	0.709526939003812	0.92401439884764
Merged-chr1-121464707-4	chr1	121464207	121465207	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029955, intron 11 of 23)	intron (NM_029955, intron 11 of 23)	33640.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	5.55727797187244	5.41364134425361	5.27368166985544	6.22727564799466	6.46073473625358	6.29525437147093	1.59841409302285	3.60893980723698e-07	2.21618201830682e-05
Merged-chr14-70024244-2	chr14	70023744	70024744	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	B4A|SINE|B4	-53201.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	2.5513951107203	2.51656310880031	2.55339300771949	2.86900909986455	2.61614595987703	2.75621256272431	1.178194566154	0.125373136411794	1
Merged-chr12-111376786-3	chr12	111376270	111377270	+	970.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	948.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	7.4967007554629	7.5227467836036	7.47964851422359	7.45276073113192	7.79995433538736	7.5565785186949	0.17072902047244	0.46571478073356	0.817146354802119
Merged-chr8-84979914-4	chr8	84979442	84980442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1194.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.41475341917411	8.21913025758917	8.11039395635725	8.2581240288744	8.42181160372259	8.0729353235847	0.00944431646539878	0.966936213658498	0.992418870149749
Merged-chr3-116146804-2	chr3	116146304	116147304	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-17116.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.75697006137508	3.79176413014847	3.95060878519626	4.02322337090501	3.85123892863024	4.06578995253332	0.457925268946386	0.370324305138471	0.754732597028877
Merged-chr11-109468986-2	chr11	109468486	109469486	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	B1_Mur2|SINE|Alu	4243.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	4.20842599343298	4.04336428240149	4.17614356464059	4.12783384416213	4.30541889890854	4.10232501699643	0.130201477975878	0.783681694849133	0.947273157369161
Merged-chr1-152838252-4	chr1	152837790	152838790	+	875.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001359257, exon 24 of 24)	3' UTR (NM_001359257, exon 24 of 24)	38137.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.08745050289618	4.34399295586226	4.89265456643292	4.43377760381242	4.53440602990998	4.71785699623799	0.216607218498325	0.662589271557506	0.906804932599005
Merged-chr1-155322375-4	chr1	155321869	155322869	+	971.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011273, intron 7 of 14)	intron (NM_011273, intron 7 of 14)	95075.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	3.61237017036103	3.76752398305074	3.46572980837474	3.53622650426689	3.57850326916276	3.70084695810255	-0.085943846346696	0.879417517964101	0.972083703102674
Merged-chr12-81889176-3	chr12	81888683	81889683	+	679.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018814, intron 1 of 35)	L1MB2|LINE|L1	29153.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	2.3851865366609	2.4115731779948	2.52893804138326	2.36088833715036	2.33666490108396	2.34708292332475	-0.594538057300622	0.466818005164586	1
Merged-chr7-141328108-4	chr7	141327599	141328599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	-31.0	NM_001141950	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	7.88528559042683	7.9333870244751	7.92067016801357	7.86203250198682	7.97424912818776	7.64222444305903	-0.102722431680429	0.645241200764581	0.900460238105405
Merged-chr18-61555185-4	chr18	61554693	61555693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146087)	promoter-TSS (NM_146087)	-80.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	8.22639979859809	8.6691804807716	8.29100922400871	8.3223650678068	8.47439002683908	8.39460789647422	-0.0217327656253558	0.925100566130413	0.983120489108249
Merged-chr7-125581423-4	chr7	125580957	125581957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21972.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.99987518323429	4.83771993903124	4.82346802189267	4.48999950787513	3.97956687539803	4.14569554277205	-1.68292678810369	0.000313331391764324	0.00722207159166921
Merged-chr10-17579005-4	chr10	17578505	17579505	+	773.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-144223.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.09975603739619	4.37780409878977	4.33547346275832	4.234396789418	4.25059752964645	4.67684273639671	0.308264531818312	0.518398165325019	0.845201813272543
Merged-chr3-127792840-4	chr3	127792347	127793347	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2190.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	7.40785625010006	7.40017368270047	7.27638853662352	7.4189532519797	7.82516654209982	7.46665231768314	0.330741584471314	0.179759936782989	0.561276907469273
Merged-chr10-120189430-3	chr10	120188913	120189913	+	683.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	12184.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	4.11833516235275	4.30303331216186	4.16661988118732	4.66137001354334	4.39449269771753	4.50626445664609	0.837848623252654	0.0648834620005455	0.332083970194424
Merged-chr17-34317421-3	chr17	34316907	34317907	+	961.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010382)	TTS (NM_010382)	-8268.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	2.81514570879036	2.77223659530152	2.95192519977491	2.95047773311508	2.72184180261732	3.13708465791931	0.464327166815074	0.519971429913624	0.846082496556008
Merged-chr5-65960476-4	chr5	65959966	65960966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6658.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.21298191865595	4.21239072587391	4.08548801893566	4.46305190048031	4.24648662984018	4.20435485627898	0.365808714328524	0.431514770043701	0.796911573849146
Merged-chr3-9027521-4	chr3	9027023	9028023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22800.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.25052782557569	6.69129225420925	6.8177474571517	7.09653153690877	7.05690257612014	6.68132026074056	0.0262690335015697	0.928784085324567	0.983898381500077
Merged-chr19-5663737-4	chr19	5663244	5664244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164482)	promoter-TSS (NM_001164482)	-37.0	NM_001164480	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	5.54550698474755	5.2227609762025	5.71421162327381	5.89868043303062	5.67144064118544	6.02912250758585	0.674948215881906	0.0501552438091661	0.285159854855906
Merged-chr7-99092230-2	chr7	99091730	99092730	+	810.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	L1MD|LINE|L1	48914.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.02882467524869	4.71695121830447	4.92256546127075	5.12948959792756	4.89006757711693	4.98777446501092	0.237683842026311	0.541047654377703	0.856688194161135
Merged-chr12-98820793-4	chr12	98820309	98821309	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 28 of 43)	intron (NM_001081191, intron 28 of 43)	49787.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	4.85609700837703	5.01988494548339	4.59336106120955	4.84882418599848	4.60564689167709	4.86228630478635	-0.172157627581196	0.677950407706087	0.913276150258218
Merged-chr12-91710316-2	chr12	91709816	91710816	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	76120.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.43260367726186	4.49702108068614	4.63459410918662	4.64830149470238	4.38548567421945	4.62208303010703	0.0787876368804312	0.854453954838875	0.965987623019113
Merged-chr11-74832949-4	chr11	74832469	74833469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2045.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	7.85252445527836	7.77105891433834	7.67099835154306	7.93764521627456	8.05307024154672	7.58244733282978	0.160502484268397	0.504227028520495	0.837539115920757
Merged-chr1-9597581-3	chr1	9597081	9598081	+	993.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015470, intron 3 of 4)	L1_Mus3|LINE|L1	-3686.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	2.54350959521782	2.47134735703203	2.73861952899713	2.3521569577117	2.55708391864262	2.37266146500955	-0.894867192914046	0.285363397419029	1
Merged-chr5-123903097-4	chr5	123902604	123903604	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4171.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.2913848426809	3.17740379355765	3.1709388470751	3.35771953610158	3.21694928485628	3.67135820938802	0.80798532257778	0.205030153664076	0.595694220420628
Merged-chr10-116581519-11	chr10	116581042	116582042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028082)	promoter-TSS (NM_028082)	-31.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	7.97453741284451	7.9088391310796	8.02795801257159	8.24156159169993	7.97096917598112	8.17962064416925	0.231597852200146	0.286337536977712	0.683634696330879
Merged-chr12-77238038-4	chr12	77237549	77238549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016893)	promoter-TSS (NM_016893)	-55.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	5.61637463728994	6.2129222524463	5.73875739946314	5.71084863672359	5.75617896610322	5.66508575107769	-0.320218299950149	0.350660468590823	0.738639974444463
Merged-chr9-118633038-4	chr9	118632528	118633528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	26319.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.2116006493732	7.20151071695982	6.86763261456734	6.99231015585011	6.72132809434618	6.68701161772299	-0.462165249446892	0.0812131332868816	0.377055149789914
Merged-chr2-165878800-2	chr2	165878300	165879300	+	814.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291158)	promoter-TSS (NM_001291158)	-363.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.07418392553646	5.9746239164964	5.79044878256679	6.25619547857914	6.41501293544	6.56037717870414	0.758526685860192	0.00987567511288416	0.0995921918304284
Merged-chr10-118106175-2	chr10	118105675	118106675	+	657.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35612.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	3.26125903766143	3.49007325715984	3.71844099580019	3.42185934807561	3.05693553229706	3.78693241161975	-0.166423180736661	0.806758073158003	0.954359967462306
Merged-chr7-143295657-6	chr7	143295101	143296101	+	775.733337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	946.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	6.81235002980394	6.80735502133511	6.48807702352048	6.7510173102097	6.8905977955879	6.36983172422975	-0.0275084519730255	0.924263863768347	0.982923745196305
Merged-chr2-157133423-2	chr2	157132923	157133923	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	B3A|SINE|B2	1799.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	5.21451126843347	5.50536207396684	5.77438596383773	5.91104784401061	6.31169645884869	6.10953457131952	1.11098964650814	0.00112639870192241	0.0197399711856698
Merged-chr7-81202584-4	chr7	81202144	81203144	+	880.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11160.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.04911356233696	5.95711596221946	6.19464197507047	5.93410479964961	5.99436119385043	5.85114487150295	-0.225350317766138	0.445477895172726	0.805194667777499
Merged-chr11-98938769-2	chr11	98938269	98939269	+	693.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177303)	promoter-TSS (NM_001177303)	-942.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.74025854054574	4.57285140700892	4.85603837229024	4.85961663653432	4.69534262380537	4.92069557833612	0.231946115431976	0.564916563322782	0.866552670637515
Merged-chr9-110624503-3	chr9	110623982	110624982	+	730.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-89.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	3.09384099385526	3.12245517683236	3.16827084101667	2.97065097654666	2.92677823753685	3.23929327684301	-0.367754676004139	0.580901946062451	0.873163089184104
Merged-chr7-87924771-3	chr7	87924277	87925277	+	870.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081414, intron 4 of 9)	L1M2|LINE|L1	340609.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	4.15114906736083	4.57812248972442	4.32452846488074	4.18400862463787	4.04111740655269	4.21167914631171	-0.6130052115526	0.200817063053874	0.590111109711357
Merged-chr10-80401657-2	chr10	80401157	80402157	+	917.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-2126.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	4.21161490705877	4.1547787827323	5.09781728904777	4.51803291646402	4.01085066540907	4.68702589416603	-0.306878425155995	0.588659730094501	0.876614432665912
Merged-chr4-133353034-2	chr4	133352534	133353534	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13719.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	4.46537838183787	4.95495212885391	4.66243428345978	4.6690818658114	4.75230073823696	4.72864483255065	0.0027479321408276	0.994861808813813	0.998961028701257
Merged-chr18-82762799-4	chr18	82762292	82763292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3753.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	5.64640418004472	5.40645200427123	5.55186063934029	6.00725027679566	5.63849369179539	5.85154578754112	0.547892599757532	0.0959615780345086	0.412951471230873
Merged-chr14-70107599-4	chr14	70107100	70108100	+	804.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7507.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	5.75459017214374	5.91409766907561	6.17022968028186	6.16845067463969	6.21873385293944	6.48645405249902	0.587540476027018	0.054839663177002	0.30085703788699
Merged-chr9-111060561-2	chr9	111060061	111061061	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2C_Mm|LTR|ERVL	-3043.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	5.24776868787986	5.03528236142332	5.3234647293758	4.53764517897279	4.24302366029804	4.35901927390823	-1.92127220353963	5.6828270120444e-06	0.000246279515634474
Merged-chr9-57653840-2	chr9	57653340	57654340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304761)	promoter-TSS (NM_001304761)	-209.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	4.59907504897292	4.9141630385356	5.37216613275453	4.77320659214113	4.75805081386968	4.64404808782017	-0.580404164576757	0.189793084832679	0.575873850510983
Merged-chr2-180702948-4	chr2	180702417	180703417	+	835.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	-815.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.6563795797932	5.54779901963211	5.5266777957158	5.5073904975008	5.54808079593383	5.67148569129565	-0.0158958094752991	0.960457887122195	0.990380695859216
Merged-chr4-129377298-2	chr4	129376798	129377798	+	775.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028603, intron 1 of 4)	CpG	730.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	5.57814515539316	5.3249568108585	5.72710658017209	5.7058546286299	5.39351278202396	5.60722607420902	0.0472923611152222	0.890732845690915	0.974557844397176
Merged-chr16-77329318-4	chr16	77328813	77329813	+	848.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015543)	promoter-TSS (NR_015543)	-15.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.00414501004587	3.92153581289108	3.78672010616347	3.67335512672161	3.46668638876419	3.643363498853	-1.07714895951211	0.0488864396980378	0.280922097513771
Merged-chr8-85507164-3	chr8	85506652	85507652	+	683.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 4 of 11)	intron (NM_173866, intron 4 of 11)	14535.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	2.95893173096922	2.68220462469907	2.96606199623436	2.87516688137477	2.7621900903831	3.20504246600317	0.387316919873706	0.599912057502453	0.881311484475003
Merged-chr17-12991844-4	chr17	12991325	12992325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175394, intron 1 of 5)	CpG	434.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	8.62792796035898	8.91527079180044	8.75596176705915	8.65993646959007	8.81192740838894	8.71911209552512	-0.054874879310223	0.791448282386304	0.949737938863565
Merged-chr1-9701215-2	chr1	9700726	9701726	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1017.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	4.50155618434921	4.70777356048372	4.68184964149457	4.81459388520511	4.81931988378843	4.89797754375572	0.486408773403621	0.223683398119093	0.618447374567053
Merged-chr15-66454158-4	chr15	66453638	66454638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019457, exon 5 of 12)	exon (NM_019457, exon 5 of 12)	46772.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	3.53363174452256	3.69369908332323	3.6119749560403	3.81457971428148	3.75886862507543	3.51414301345478	0.315455841565475	0.572479046530403	0.869840399318717
Merged-chr5-3369529-4	chr5	3369042	3370042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	25649.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.81581381913458	5.96695057697146	5.98691344748007	5.90457047965147	6.14702763004443	6.17600352642741	0.27582497936871	0.355250189401357	0.742212688350285
Merged-chr4-138013027-1	chr4	138012527	138013527	+	786.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	15202.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.35523692009558	5.31653684801498	4.98995320693137	3.92955668378847	3.70059611463676	4.21407806847839	-3.56054777395155	7.03053530783633e-12	1.17942899575493e-09
Merged-chr2-31767909-3	chr2	31767377	31768377	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	7704.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.27831010012735	5.56252612283734	5.70784663518933	5.3550792031756	5.24838862030146	5.39026844348755	-0.374433128969055	0.283641967284517	0.681376161050487
Merged-chr16-55795733-6	chr16	55795274	55796274	+	948.267822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26364.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.38284464134043	6.18872797319357	6.32645347440775	6.12895162639291	6.10741875735165	6.38604344442663	-0.160813468233341	0.572702347405417	0.869921264041146
Merged-chr11-68459127-2	chr11	68458627	68459627	+	958.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	27002.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.59236618594043	6.63274885543157	6.44167388830917	6.2331581333007	5.65420764659078	6.31451543517021	-0.785076106020853	0.0144173345528918	0.129216062480965
Merged-chr7-143059108-2	chr7	143058608	143059608	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5422.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	6.46394926988488	6.46281494635596	6.83613887184765	6.48781486145824	6.78387460287939	7.03484867115945	0.306556775752001	0.299104345326457	0.695927450710144
Merged-chr11-116196704-2	chr11	116196202	116197202	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271898, intron 2 of 13)	ID|SINE|ID	-2153.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	4.1867002046528	3.98358411198787	4.10729330530285	3.88170393198433	3.88977333942078	3.93542313883216	-0.581313204727527	0.240686111933661	0.637751895088513
Merged-chr7-17024008-4	chr7	17023466	17024466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	3948.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	7.56547121231599	7.52319355363935	7.58088934916766	7.87596821713268	7.85362320326505	7.32776390657705	0.236777959559652	0.350084729275077	0.738177163457543
Merged-chr11-114694172-4	chr11	114693632	114694632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 3 of 13)	intron (NM_053273, intron 3 of 13)	18664.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.55137057104267	6.7300611078837	6.40782598028154	6.37043735214023	6.87130583977417	6.84790400652424	0.22365756147359	0.444994899531327	0.804675336307783
Merged-chr3-109246224-3	chr3	109245733	109246733	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94450.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.10369822496491	3.02438800703966	3.26529129799398	3.22449258096873	3.11689443946733	3.10784069208834	0.0954072790098236	0.882541761838141	0.973184220613163
Merged-chr15-67088777-3	chr15	67088269	67089269	+	820.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88113.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.53604823651614	3.79531641524703	3.47071146541554	3.58057820475731	3.47531330991691	3.85451768472333	0.0832791440616711	0.886999168116234	0.973794308941933
Merged-chr2-77276317-4	chr2	77275826	77276826	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	4266.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	5.43267252969494	5.85211265442828	5.62385254547706	5.6289010334488	5.48508698688483	5.60377059243371	-0.15184567273309	0.651034717732059	0.902735752871093
Merged-chr13-49202456-2	chr13	49201956	49202956	+	878.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026738)	TTS (NM_026738)	13570.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	5.70706568813435	5.59650001148476	5.37905678635408	5.38322788546532	5.47815889438452	5.58955209465184	-0.181309540226698	0.58746453791005	0.87593852289973
Merged-chr5-31220171-2	chr5	31219671	31220671	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	CpG	374.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	7.3409049241566	7.46602245158545	7.35588368905649	7.39566152880678	7.47800612340127	7.56573344464879	0.130383195153558	0.565138815333897	0.866552670637515
Merged-chr19-5406000-2	chr19	5405500	5406500	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-815.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	3.7387294521741	3.55146296876418	3.89956689194257	5.40554700142819	5.07436103021448	5.56525035701938	4.86091378012373	1.37939158824637e-14	3.59800674842647e-12
Merged-chr11-119677333-4	chr11	119676828	119677828	+	923.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74423.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	2.78221109895064	2.9789419663177	3.01338353623664	2.90980958357986	2.59949983721855	3.08534376775283	-0.247809941202352	0.742119186317089	0.935114004014119
Merged-chr12-55385092-4	chr12	55384583	55385583	+	914.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	861.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	4.22066360370201	4.24813088185127	4.64054440173988	4.29047704685232	4.10601371240144	4.70498045406203	0.0140504864777447	0.97743964295779	0.994811299752086
Merged-chr18-38393757-1	chr18	38393257	38394257	+	605.0	f0_balb.idr	Intergenic	MER33|DNA|hAT-Charlie	-25150.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.73999103086757	3.62208302479637	3.79427919549833	3.55907849060012	3.88212840253817	3.95886193608439	0.30209891354057	0.581748187166803	0.873425292899358
Merged-chr3-20294686-2	chr3	20294186	20295186	+	575.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18953.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	4.72965989095896	5.15102533658244	5.30264220738557	5.03455566551064	4.96679056218605	5.11861356335546	-0.0809402956317011	0.838699247479031	0.96255643337768
Merged-chr2-26316025-2	chr2	26315525	26316525	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355575, intron 1 of 13)	intron (NM_001355575, intron 1 of 13)	492.0	NM_153410	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	3.82364493914483	3.43440478570688	3.48145937667586	3.27090321234428	3.28650612500994	3.60604067043573	-0.758795796656469	0.220514554567159	0.615020847852445
Merged-chr12-3911947-2	chr12	3911447	3912447	+	854.583374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	20203.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.54039697546902	4.93654028709783	4.98002546522818	4.64450626221094	4.9620039324407	4.79285726570956	-0.0375594224725882	0.928967454758993	0.983977379981026
Merged-chr3-14836942-3	chr3	14836440	14837440	+	746.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-26598.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	4.18640434692897	4.20064402184859	3.9405694248758	3.31061714708399	3.10530478315079	3.4044853093692	-3.44707922363529	4.61612568333469e-07	2.73779431071244e-05
Merged-chr18-4345500-1	chr18	4345000	4346000	+	675.5	f0_balb.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	7453.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.22016654872334	5.50093612443206	5.60663831087943	5.61297307263384	5.83873027862206	5.64190350161269	0.493818760870258	0.143320109461149	0.505355524537813
Merged-chr2-130284416-4	chr2	130283910	130284910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130884)	promoter-TSS (NM_130884)	41.0	NM_130884	170718.0	Mm.29590	NM_130884	ENSMUSG00000027406	Idh3b	C78231	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding	6.23676922643791	6.31964447157634	6.36316688650551	6.49744336660401	6.56049432968657	6.32542686014449	0.275221232340103	0.310332707916663	0.705829393476587
Merged-chr15-78247853-4	chr15	78247343	78248343	+	978.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3032.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.775611540188	6.60045137809824	6.75598612067428	6.30799517306042	6.04823099297267	6.1256836424543	-0.892710723529204	0.00116626531109895	0.0202975536511025
Merged-chr7-44896991-2	chr7	44896491	44897491	+	894.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_027376, exon 3 of 11)	exon (NM_027376, exon 3 of 11)	912.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	4.31211027502763	3.9953068874369	4.2885773578021	4.11661611371508	4.10288336953357	4.35536578961739	-0.0377690776808403	0.937608114321575	0.986057836872162
Merged-chr11-116076947-2	chr11	116076447	116077447	+	875.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 2 of 32)	intron (NM_001009573, intron 2 of 32)	1014.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	4.28979716642765	4.37711788061394	4.49968035416014	4.32855859422535	4.16398547050368	4.31338743050364	-0.320928299978891	0.476521047087407	0.82257619929543
Merged-chr17-57330666-2	chr17	57330166	57331166	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-28020.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	3.74182893294471	3.48777233023895	3.93944879453908	3.75649870228455	3.83212222158155	3.81560276198815	0.245126207582278	0.656625795444076	0.904693205515276
Merged-chr6-113469661-4	chr6	113469162	113470162	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034029, exon 14 of 14)	exon (NM_001034029, exon 14 of 14)	-1793.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	3.46211026111472	3.34884049914514	3.4402492063632	3.46660619037381	3.22962378297625	3.2237475546909	-0.410082511397427	0.501451497240681	0.835715668524096
Merged-chr18-55398478-4	chr18	55397972	55398972	+	666.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34|LTR|ERV1	-405881.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.01823447962483	3.77631362465713	3.68345245250044	3.69828896112716	3.25212352657383	3.64670661159181	-1.01188468784897	0.0924834637360254	0.405125772600537
Merged-chr16-8637611-4	chr16	8637085	8638085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	116.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	7.48379606037339	8.06739006911237	7.58741420395025	7.72957222332058	7.82058382898161	7.50269411708382	-0.071234617786418	0.790559954116272	0.949510125158813
Merged-chr13-63564954-4	chr13	63564420	63565420	+	856.279175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	815.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	4.63693207344909	4.21377664940496	4.48583258716487	4.81064274017239	4.25491661579138	4.55319958887136	0.245730167422955	0.60538422086865	0.88352351689788
Merged-chr13-30659395-2	chr13	30658895	30659895	+	618.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-664.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	7.13961075630217	6.8165867446934	6.78028530173675	7.03606341871576	6.97828385278136	6.72650676672753	-0.00263716152898971	0.992147038111734	0.998427455457837
Merged-chr1-151653651-4	chr1	151653148	151654148	+	859.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82275.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	4.17372022368676	3.94406102109625	4.15946334147275	4.10171616587648	4.06366211756231	3.98883672887962	-0.111702041460504	0.818491528276109	0.956975045804917
Merged-chr9-59723313-4	chr9	59722839	59723839	+	839.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15575.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	3.58146650767912	3.35332644335161	3.67845597135142	3.57007763287726	3.74398998883407	3.6970827668678	0.473991670548824	0.40553433085196	0.780279107725129
Merged-chr4-150490025-1	chr4	150489525	150490525	+	916.0	f1_balb.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	162149.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.55456304932541	5.47763041747208	5.32603296216905	5.09746337231996	5.22880425760389	5.15875814539515	-0.590000966920872	0.0884226287129145	0.39466998165375
Merged-chr16-38522715-4	chr16	38522233	38523233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024273)	promoter-TSS (NM_024273)	-70.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	7.43109663721921	7.64100382004212	7.68243202552501	7.81466602016372	7.87977033201294	7.63849171873848	0.289501813113429	0.207137085327558	0.597920729067479
Merged-chr7-28675968-2	chr7	28675501	28676501	+	752.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-16848.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	3.6667678329672	3.68202798309244	3.9788275806896	3.71766559611378	3.75266576564097	4.09032272050104	0.257784488028765	0.637388604162456	0.897347930665099
Merged-chr9-119336271-2	chr9	119335768	119336768	+	827.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010851, exon 6 of 6)	3' UTR (NM_010851, exon 6 of 6)	3772.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	3.79862429119845	3.94600150865337	4.48253252016393	4.10260900797689	3.8983385630055	4.51061135499296	0.240501977328825	0.668924561354514	0.909385924601941
Merged-chr3-8971834-4	chr3	8971330	8972330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MLT1J1|LTR|ERVL-MaLR	-7684.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.95786509182974	3.90765547871547	4.2067096876138	4.03215734037286	3.9385914279547	4.04898075599573	-0.051717393837214	0.917146827917337	0.9815299454321
Merged-chr7-92636675-1	chr7	92636175	92637175	+	1000.0	f0_balb.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	467.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	5.94507145137109	5.78284969650348	5.58852173299752	5.08111714110507	5.23850372734139	5.25259634057764	-1.14187266779067	0.000815955645767975	0.0153780379100932
Merged-chr8-66323612-2	chr8	66323112	66324112	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-62689.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	3.85735498866368	4.18033216476303	4.25983560207575	4.18639813269846	4.19614149595014	4.23927321081251	0.283831478094805	0.560164551853359	0.86517480267848
Merged-chr2-129306200-4	chr2	129305675	129306675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040371, exon 4 of 5)	non-coding (NR_040371, exon 4 of 5)	3797.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	7.36875494575395	6.76250456086002	6.76531763141178	7.22101205401221	7.53632309824409	7.11598111147557	0.454155423389828	0.13036483154266	0.482560431744706
Merged-chr17-71184035-3	chr17	71183533	71184533	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	55.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.83887096955639	7.47445868564916	7.34925376093706	7.73834596743058	7.41907921765046	7.64183795879692	0.0372672931206575	0.885227276706099	0.973549591486895
Merged-chr8-33619064-3	chr8	33618552	33619552	+	965.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178648)	TTS (NM_178648)	19431.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	3.93677435020582	4.05450802418491	4.02067936975988	4.3536365760788	4.5745699428876	3.93218016964949	0.892917177896944	0.0811033204740334	0.376797604131958
Merged-chr12-20921234-4	chr12	20920684	20921684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-105405.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	3.63002367970583	3.51204308665261	3.78270781816249	3.76670229520343	3.46355184670219	3.89906367306563	0.247647521743858	0.665273646804285	0.907762144972922
Merged-chr2-121169918-3	chr2	121169330	121170330	+	880.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290819, exon 1 of 5)	exon (NM_001290819, exon 1 of 5)	1295.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	4.90739420471366	4.72310697504681	5.10841351428646	4.72912967133938	4.50295446186908	5.20144533133029	-0.187663577600376	0.671733096497022	0.910600470720976
Merged-chr3-107098879-4	chr3	107098380	107099380	+	933.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2687.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.90602128497729	6.81112447202265	6.46871962738622	7.47115143133873	7.60495570898212	6.92820305859749	0.944470825495341	0.00152947361289288	0.0250528385632899
Merged-chr2-22807522-4	chr2	22807026	22808026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	33199.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.56021402801296	6.80002579270692	6.77146293249764	6.63612083218138	6.81546438449851	6.58761083287355	-0.0348454489804772	0.894882594765302	0.97562158938748
Merged-chr14-25736799-4	chr14	25736301	25737301	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	32055.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.04876430219447	4.76164879784822	5.58131480664686	5.03098191928554	4.65949834759251	5.18252356653109	-0.416037637278338	0.353884711318317	0.741023204050999
Merged-chr5-135187670-3	chr5	135187172	135188172	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011714, exon 1 of 19)	exon (NM_011714, exon 1 of 19)	349.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	7.6187237022614	7.97513689464338	7.78740809880599	7.95190614329935	7.8532022770484	8.05795339699699	0.213735647173656	0.354531257953824	0.74168645124508
Merged-chr7-129591980-4	chr7	129591496	129592496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172255, exon 1 of 29)	exon (NM_172255, exon 1 of 29)	133.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	7.26584139875958	7.72203698243976	7.39788027316864	7.57471421301941	7.3810860741444	7.4336586565368	-0.0236957090317408	0.925044263642444	0.983115771386465
Merged-chr10-81633727-4	chr10	81633209	81634209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 2 of 19)	intron (NM_027480, intron 2 of 19)	5169.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	3.51139358415464	3.59802520569869	3.41156191022075	3.59511400273891	3.06300868932486	3.18257470028026	-0.797571767506771	0.227374010373968	0.622489936998558
Merged-chr5-90689205-2	chr5	90688705	90689705	+	583.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.31065384108528	4.5984399853714	4.34593221985252	3.9789248579696	3.61825523527936	3.70865902131437	-1.94739253317659	0.000242096497125125	0.00584063941223177
Merged-chr3-142765175-4	chr3	142764664	142765664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145546)	promoter-TSS (NM_145546)	-83.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	7.45432856979006	7.51063694448674	7.10713315928669	7.42183834278632	7.33602467348218	7.19075756696199	-0.0818675158432181	0.742882510664298	0.935368371900894
Merged-chr5-114772886-6	chr5	114772359	114773359	+	927.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_027872)	TTS (NR_027872)	632.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	7.98215800853668	7.9295430805223	7.84191061312301	7.88939720922138	7.57266388243772	7.9755676748639	-0.148468385872708	0.524540151378009	0.848725345027108
Merged-chr16-94239334-4	chr16	94238843	94239843	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	50948.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	6.03471489792528	5.80285030784775	5.80885786263058	6.01680478780208	6.34411329064479	5.89684421725063	0.38617520029722	0.222200666266676	0.617097995351209
Merged-chr2-166304762-3	chr2	166304275	166305275	+	890.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30867.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	5.27371454587411	5.04365422054917	5.13263661066673	5.15561334953841	4.72704908323786	5.0962316589248	-0.33250045481566	0.392072211020027	0.770877706393063
Merged-chr6-82991514-4	chr6	82990968	82991968	+	804.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	42003.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.64030324977026	6.07946136508838	5.57804526420686	5.37744355229676	5.28722346183892	5.11861133272675	-0.992472542743626	0.00569499114392871	0.0671202299014193
Merged-chr15-76606208-2	chr15	76605708	76606708	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361485, intron 1 of 36)	intron (NM_001361485, intron 1 of 36)	1383.0	NM_053193	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	2.77687947670486	2.7495402879953	2.70947045394647	2.37471120029138	2.34561465220734	2.65965603722523	-1.78199354737095	0.0353459505506774	1
Merged-chr5-36561666-2	chr5	36561166	36562166	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	MER3|DNA|hAT-Charlie	20731.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.31515209401869	5.89588716836759	5.80629142450634	5.29691117070565	5.42039071272493	5.69629607992134	-0.414246612470544	0.259427724112528	0.657002132577161
Merged-chr9-22519726-3	chr9	22519219	22520219	+	729.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	44004.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	3.28819833826088	3.43357428318913	3.20259119865903	3.45509002048227	3.37579315522882	3.3346538027271	0.286624826525175	0.638302125970914	0.897417219434429
Merged-chr8-119422237-3	chr8	119421746	119422746	+	967.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14916.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	3.04780071437643	2.90458468524662	3.42513028409221	2.92051835764475	2.90524784883184	2.94875153327243	-0.970224002750306	0.172116254217824	0.550728974500212
Merged-chr9-122138864-4	chr9	122138353	122139353	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357775, intron 4 of 7)	L1M5|LINE|L1	21394.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	3.08959344969703	3.30849429903711	3.50221196128496	3.22700354431623	3.18584155501899	3.52112823512547	0.0318958388995758	0.960586304363994	0.990386809359123
Merged-chr11-62648050-2	chr11	62647550	62648550	+	840.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175002)	promoter-TSS (NM_175002)	-1.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	4.14321451521367	3.9502604654897	4.40367311549329	4.25841325844052	3.81612878208354	4.17373500385282	-0.225996838784571	0.663538521157407	0.907270618047719
Merged-chr15-25282512-4	chr15	25282013	25283013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131251.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.03267382784629	7.29966154209596	6.7684131832841	6.97146827375452	7.18944068834293	6.77853646645372	-0.093446518007749	0.739941980892847	0.93436568346332
Merged-chr8-125778056-3	chr8	125777537	125778537	+	626.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175561, intron 25 of 33)	RLTR26B_MM|LTR|ERVK	43834.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	4.08756643627484	4.07939192665838	4.08560691011164	3.95684838651997	3.50990514433149	3.69795226031626	-1.10935067589852	0.0409193536605462	0.252300188145262
Merged-chr1-157285565-4	chr1	157285063	157286063	+	893.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-126789.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	3.4709019904629	3.5239713905379	3.2475762608186	3.4277026024221	3.18510941106271	3.59835640166074	-0.0649375167490357	0.917574202501802	0.981671671382448
Merged-chr5-43181664-4	chr5	43181169	43182169	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51794.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	5.14565392894509	5.04033261967456	5.14600437452127	5.60299473226431	5.55522524458635	5.54999868133207	0.911551770678247	0.00688103923794469	0.0771536872269104
Merged-chr1-171057515-4	chr1	171057019	171058019	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	1875.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	4.84800541599675	4.78602074731947	4.78861146180951	5.32244327695138	5.15084949007868	5.42204476640852	1.03093394587705	0.00563064171504141	0.066635533469658
Merged-chr19-9975105-4	chr19	9974618	9975618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5482.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	8.23821585686929	8.24539332871525	7.77230060880815	7.76431415150063	8.06481076638727	7.51586541667678	-0.425010246323631	0.113199473992625	0.44938889230771
Merged-chr19-56566190-4	chr19	56565664	56566664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	17903.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	4.45679192249927	4.17533818773194	4.03026649878566	4.28635134456958	4.47798330835306	4.43202945665841	0.421805354524187	0.373881568779583	0.757605542484584
Merged-chr1-156624410-4	chr1	156623908	156624908	+	848.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 3 of 12)	intron (NM_001136104, intron 3 of 12)	49931.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.8673417380449	4.78163776006341	4.6718485466164	4.74234438758104	4.56803335411422	5.0944948115299	0.0586633527344183	0.889159932013718	0.974207858658472
Merged-chr11-119942947-4	chr11	119942443	119943443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130862)	promoter-TSS (NM_130862)	-149.0	NM_001037754	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	5.95737456841866	5.67253962110748	5.50480754680356	5.74884378505136	5.30104178136077	5.70839029077231	-0.259308399031761	0.464311001170622	0.816311481267012
Merged-chr16-21947574-4	chr16	21947071	21948071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025693)	promoter-TSS (NM_025693)	-19.0	NR_037773	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	5.47741924864215	5.80068494778297	5.47204638259568	5.21772124243203	5.25372585440105	4.95271394348354	-0.861031784521526	0.017565611280547	0.148070041883472
Merged-chr2-131091066-4	chr2	131090589	131091589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4324.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	6.8203945574234	6.57214705308243	6.67225949214477	6.30879128862199	6.78754024169408	6.89378068984644	-0.0105533036791166	0.971203515607959	0.993727127580947
Merged-chr12-85705519-7	chr12	85705014	85706014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18794.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	8.4494326879465	8.42611665284565	8.23135619924709	8.42198466713212	8.45838259442819	8.07116890351258	-0.0569526523702199	0.801879937955348	0.953087918028035
Merged-chr14-70055741-2	chr14	70055241	70056241	+	818.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21704.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.71568072928258	4.30851516865798	4.26381506881923	4.91073411983463	5.04086278310423	4.7422667137109	1.06324341504249	0.017077230629567	0.145411605221552
Merged-chr12-55465388-2	chr12	55464888	55465888	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27259.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.36342174969326	5.23826601078238	5.42958675321494	5.40968134882555	5.36537395585108	5.21042783493374	-0.00717413909213648	0.983317819905085	0.996260780969259
Merged-chr5-44225654-2	chr5	44225154	44226154	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	952.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	3.56336966979547	3.71521969426365	3.81521817508134	3.90964751434858	3.99630182761106	3.72868946278949	0.625264095177454	0.24382128695267	0.640958811221234
Merged-chr1-64374096-4	chr1	64373634	64374634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-158670.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	8.42786991393763	8.43665798994223	8.21586269999085	8.32994832538473	8.5897172414714	8.00548136357211	-0.0388706566606459	0.873843029273534	0.970492962848917
Merged-chr4-129619107-4	chr4	129618612	129619612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198026)	promoter-TSS (NM_198026)	-19.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	6.62007729531424	6.69426483009072	6.73885410455398	6.97188959380128	7.18731369898156	7.11651788702617	0.639288264914893	0.00972620564493588	0.0985866876968966
Merged-chr2-167742678-4	chr2	167742175	167743175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	51498.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.37636956233003	4.91182611550181	4.87724669418007	5.41602270916403	5.33194374446122	5.30151959275393	0.535812371239665	0.162865023817573	0.536232704250262
Merged-chr17-45592961-4	chr17	45592440	45593440	+	802.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022880)	promoter-TSS (NM_022880)	-547.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.32772206443049	5.48697432563222	5.48598975476364	5.69533697421843	5.75889690132641	6.28937923843926	0.911456107179446	0.00933375874968377	0.0959292734737756
Merged-chr13-113917758-4	chr13	113917254	113918254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123246.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	7.26465481197831	7.56383214814005	7.11020830010755	7.56107527473245	7.75702620647403	7.04323751106366	0.242714401205817	0.405750434866961	0.780418441192069
Merged-chr9-49051089-3	chr9	49050588	49051588	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-4493.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	5.64121315273847	5.76554289436144	5.20168308123192	4.336071519885	3.99118718887776	4.4709742929344	-3.08396462292503	1.33605960398465e-11	2.10550847591581e-09
Merged-chr17-84188651-4	chr17	84188156	84189156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-709.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	7.64680945127517	7.6784480341516	7.59763558317422	7.2222700369229	7.60192410475573	7.6077241185934	-0.222360904675666	0.354240819848729	0.741447482268431
Merged-chr11-49051625-2	chr11	49051125	49052125	+	774.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173434).2	promoter-TSS (NM_173434).2	-383.0	NM_173434	245240.0	Mm.452996	NM_173434	ENSMUSG00000069892	9930111J21Rik2	9930111J21Rik|Irgb5	RIKEN cDNA 9930111J21 gene 2	protein-coding	6.18231637600601	6.2997333008852	5.64965215455531	6.18554945364143	6.51839845451642	5.93860919309099	0.271248403389051	0.438152674161592	0.800419903410376
Merged-chr17-25016847-4	chr17	25016348	25017348	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	762.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	7.68176175203692	7.75889006685808	7.67507609451282	7.268029482667	7.7321270886742	7.51354258382135	-0.26415855931821	0.278262652084513	0.675555045695919
Merged-chr5-117114807-1	chr5	117114307	117115307	+	1000.0	f1_c57bl6.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	1186.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	5.48033389407879	5.44140014534333	5.65831273640422	5.8123092646177	5.55783253510071	5.77114982572526	0.354207069979998	0.276350692602848	0.673711566430839
Merged-chr12-80110844-2	chr12	80110328	80111328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	2185.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	5.30309831983862	4.92359558066803	4.9366634562426	4.92925478464994	5.06411134140937	5.0384791964801	-0.128365431602666	0.739082788670956	0.934159689508642
Merged-chr6-120191104-3	chr6	120190602	120191602	+	833.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-2721.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.15526724035752	3.10167606466142	3.34285259635848	3.12388525714509	2.98524823465734	3.30636604838031	-0.261498527510353	0.689643756014628	0.9174374504455
Merged-chr17-47594856-2	chr17	47594356	47595356	+	728.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081636, exon 4 of 7)	exon (NM_001081636, exon 4 of 7)	1389.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.92369781559621	3.92349152065861	4.49360897634755	4.05077605662243	3.95459742350327	3.91324142010606	-0.451226620225532	0.396491282288376	0.773652887901204
Merged-chr14-21813431-4	chr14	21812940	21813940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18121.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	6.2715419679573	5.6644516010368	5.81093288556065	6.6367788679199	6.48093497685379	6.12260818956931	0.815261200934697	0.0163916580320012	0.141353205671754
Merged-chr13-5726281-6	chr13	5725822	5726822	+	948.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131770.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.89312972790119	4.91183730240043	5.14095708809905	4.55234264255039	4.55726986178056	5.14286947290998	-0.477376491367733	0.268711096173616	0.665939326594617
Merged-chr13-98761948-4	chr13	98761445	98762445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 11 of 25)	intron (NM_172591, intron 11 of 25)	53504.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.80522638875528	6.1345225632816	6.06655691452824	6.53054365840344	6.783710145616	6.36014796111554	0.94591062595193	0.00156288633050098	0.0255089536658151
Merged-chr8-47690059-4	chr8	47689559	47690559	+	963.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14900.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	4.68118640575547	4.68306628737338	4.57686205831522	4.42236355224648	4.79915197659537	4.6436724220467	-0.0313674678759355	0.940914272477948	0.986888338850358
Merged-chr19-43723153-1	chr19	43722653	43723653	+	585.0	f1_c57bl6.idr	intron (NM_053103, intron 9 of 12)	intron (NM_053103, intron 9 of 12)	29847.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	3.26070321577989	2.83524617826494	2.75987368072863	3.11882579615694	3.14201868412471	3.21236299038906	0.791903881231463	0.289890883915056	0.687626234180107
Merged-chr7-99980217-6	chr7	99979604	99980604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175388, exon 1 of 6)	exon (NM_175388, exon 1 of 6)	354.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	7.56482983398848	7.16066595417352	7.23004409658789	7.33933896053405	7.07133833316444	6.83544211454567	-0.343246542371694	0.211566442612354	0.603945120913907
Merged-chr11-105420897-4	chr11	105420395	105421395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35840.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	7.02883694742323	6.43215041885158	6.73342975930578	6.63055145377763	6.36346617200051	6.39467097804983	-0.457952900060087	0.126131910915979	0.474959679752761
Merged-chr14-54734416-1	chr14	54733916	54734916	+	561.0	f1_c57bl6.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-22242.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	5.57633935555146	5.52104996956392	5.7224185818614	5.69569915254342	6.12419625826958	5.85961730293098	0.564992184897196	0.0823327383216023	0.379332363801987
Merged-chr4-43578699-4	chr4	43578184	43579184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-51.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	5.62766677041773	5.5775652699708	6.05657501678717	5.48410158770921	5.57119143108696	5.8576746208874	-0.220951958288389	0.523583053950297	0.84831954889587
Merged-chr1-171329277-7	chr1	171328806	171329806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357552)	promoter-TSS (NM_001357552)	161.0	NM_011615	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	8.63040463959202	8.34147749467797	8.17692457385531	8.65266295040472	8.60796391771863	8.00226578161607	0.0829547808211804	0.758362574469204	0.940121252394213
Merged-chr13-52596889-4	chr13	52596391	52597391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011518)	promoter-TSS (NM_011518)	9.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.09211892022345	6.99868867829732	6.8228591232477	6.78786271221023	6.77624408527239	6.72469761966852	-0.336345759333328	0.178337338021471	0.559402033136986
Merged-chr8-46139765-2	chr8	46139265	46140265	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15619.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	7.06851283933545	7.12998109739326	7.17604862357336	7.35644066144456	7.45578148754244	7.09407149354317	0.294102186984272	0.227850338470724	0.622974105854565
Merged-chr5-92083083-4	chr5	92082593	92083593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080797)	promoter-TSS (NM_001080797)	-176.0	NM_001080797	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	7.65843629246024	7.91974463666922	7.91897648031658	7.73601308323555	7.8411255696601	7.96779149367784	0.0184231892499487	0.935397096050085	0.985852245513165
Merged-chr9-114752378-4	chr9	114751810	114752810	+	818.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	21107.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	5.09009628836985	4.60362506029138	5.0275410793988	5.39860002778345	5.36626515109212	4.9056434011826	0.68928115241183	0.0947690936311146	0.410363589865621
Merged-chr1-136414488-2	chr1	136413988	136414988	+	564.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026500)	promoter-TSS (NM_026500)	-783.0	NM_026500	67997.0	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	5.91542627863273	6.05510366069868	5.5495451860154	6.00416037782562	5.98030138045548	5.64385234142884	0.0442007858419422	0.894864591951714	0.975618128213251
Merged-chr9-108262759-2	chr9	108262259	108263259	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276486, intron 1 of 3)	intron (NM_001276486, intron 1 of 3)	1056.0	NM_001276493	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	3.23175037641443	3.30858429060564	3.31560464416671	3.43423621621528	3.18956298814289	3.15200187095102	-0.0767920262907059	0.902391325237113	0.977478362198987
Merged-chr1-151312681-4	chr1	151312194	151313194	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31792.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	4.57893459535953	4.17069379344395	4.29703814329247	4.33455426052533	4.23986814278013	4.40895707171538	-0.103865679911319	0.823196272014044	0.958229268089819
Merged-chr8-25973294-4	chr8	25972792	25973792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	3452.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	6.66116662442075	6.33207870922707	6.44611510742236	7.4218333051437	7.59099944776754	7.12037139309587	1.39403771023718	3.28938560616669e-07	2.03367635373615e-05
Merged-chr5-117874055-2	chr5	117873555	117874555	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	7216.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	2.34973900436497	2.53696225267307	2.44521827866794	2.44721415397882	2.28339596633892	2.5823554297668	-0.0529327067729243	0.948941710041883	1
Merged-chr6-59208869-4	chr6	59208384	59209384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081145)	promoter-TSS (NM_001081145)	14.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	8.04577101298854	8.28021876774554	7.69429692524514	7.74691909570855	8.00679492636818	7.69467833605081	-0.295959010816244	0.250365111361448	0.647692456975605
Merged-chr6-72165045-4	chr6	72164560	72165560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41863.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.05598939437954	6.13732585521636	6.11327272279947	6.16740008610038	6.21755551215568	6.39126484668654	0.25941250458059	0.356829289504558	0.743460467581681
Merged-chr10-21419402-4	chr10	21418915	21419915	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	42115.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	3.45273591769302	3.79697433169045	3.81406136206656	5.12001527088612	5.15961812844117	5.04181784748478	4.19738073761698	1.63685057456259e-12	3.0192688521407e-10
Merged-chr13-102023871-2	chr13	102023371	102024371	+	947.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-255654.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.80765850399175	2.79688931441993	2.68454818717549	3.01990341074052	2.89804730759606	3.06849724848626	1.12031109900205	0.118155484182637	0.459156615067228
Merged-chr9-61967435-3	chr9	61966938	61967938	+	947.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-20639.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	3.68898733786529	3.74079172955815	3.95776120056295	3.57316277583473	3.44361286054535	3.93470498575901	-0.463626485243727	0.419545013967011	0.789091124470564
Merged-chr6-116227335-2	chr6	116226835	116227835	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026585, intron 14 of 30)	intron (NM_026585, intron 14 of 30)	19302.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	6.08004660622584	6.1544089083981	6.11864455759745	6.06988348577976	6.03031823877364	6.41129869812039	0.0877898580041276	0.766270088344277	0.942437273046488
Merged-chr11-74826343-4	chr11	74825826	74826826	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4598.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	6.66393171973052	7.13258298009206	7.09204747170648	6.13026545553331	6.27831134320835	6.28688534440222	-1.18605061617168	3.44125052280568e-05	0.00115692756970349
Merged-chr1-72711272-4	chr1	72710764	72711764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	4.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	7.14286623849748	7.52253905860092	7.22854067767966	7.09554996010673	7.45791006206738	7.32048557505005	-0.0142981664952571	0.956110957662745	0.989807313282509
Merged-chr11-103225056-2	chr11	103224556	103225556	+	696.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_016896, exon 13 of 16)	exon (NM_016896, exon 13 of 16)	-6624.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	3.04917979793145	3.20346509272025	3.31016634419981	3.30558443457627	3.15792157849135	3.15334095424636	0.0849363011537161	0.89423259378894	0.975424158569389
Merged-chr12-110957210-4	chr12	110956713	110957713	+	825.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175336, intron 18 of 20)	L1MB7|LINE|L1	21405.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	4.59799194283158	4.40233560164401	5.00987420169807	4.63837907299044	5.15384411717595	5.00781372680278	0.611468993274758	0.172926455548018	0.551677958486292
Merged-chr3-146111136-3	chr3	146110638	146111638	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3102.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	5.95530242323046	5.56921833123352	5.74474359812445	4.55231062359233	4.58141828572056	4.85518386115743	-2.32539894678433	1.61576497391766e-09	1.71704434163142e-07
Merged-chr13-29292965-4	chr13	29292447	29293447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131896, intron 15 of 16)	RSINE1|SINE|B4	276692.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	4.75499906852835	4.63978609392727	4.82156504823126	5.67815942375729	5.79109792985907	5.01151563092289	1.6801135109336	3.5836718392917e-05	0.00119371563812563
Merged-chr6-149309641-4	chr6	149309087	149310087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001289662, exon 1 of 5)	5' UTR (NM_001289662, exon 1 of 5)	173.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	8.21984465482972	8.34854157175315	8.17920463235843	8.31103308863811	8.34165141487482	8.13280133743874	0.0216209959156492	0.91840053930884	0.981763285723178
Merged-chr6-42407439-2	chr6	42406939	42407939	+	595.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199159)	TTS (NM_199159)	1910.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	2.71502422772208	2.86088635867274	2.97270908582516	2.73595211909072	2.94303251565816	2.86762316637065	0.0210434814537744	0.976670774841771	0.994723308989508
Merged-chr5-146794252-4	chr5	146793758	146794758	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	(CCCCAG)n|Simple_repeat|Simple_repeat	698.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.75324767595176	6.58936287437082	6.91553935520769	6.78092206201112	6.48636706952145	6.9333003623741	-0.025486397104581	0.927258747829939	0.983584626679457
Merged-chr2-167755632-2	chr2	167755132	167756132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	64455.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.31432457454223	4.40202052317722	4.52823847014359	4.35458698969987	4.07019093960249	4.55482516091386	-0.219533008674698	0.639204467789028	0.897953829221252
Merged-chr2-122581885-4	chr2	122581385	122582385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	29392.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	6.07888590834611	5.94792508804387	6.06413670745894	5.31442353220404	5.66633679308238	5.18309066292774	-1.10221421456691	0.00145358309666254	0.0241561298795879
Merged-chr9-35038509-4	chr9	35038015	35039015	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78213.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.93371829861708	6.06056655104924	5.74744297704738	6.21726121397736	6.35533480344354	5.83778602331078	0.410601345193051	0.198619033821751	0.587010462678138
Merged-chr1-94721221-4	chr1	94720731	94721731	+	941.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76211.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	4.12943010981799	4.586406559305	4.13954373213922	3.92323683902238	4.20902220501354	4.06111881925326	-0.650476817157971	0.201652955535459	0.591183995476557
Merged-chr18-65694921-3	chr18	65694418	65695418	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3350.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.89468474148175	7.84094199012999	7.47027327926969	7.49816461951516	7.72305323072638	7.26299641201577	-0.344103931816698	0.186290105783137	0.570803258887202
Merged-chr6-99667445-4	chr6	99666938	99667938	+	924.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-667.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	5.02619548496123	5.25726241535324	5.00774745637145	5.11243086754565	4.85384247925799	4.92569783581121	-0.301944108468149	0.426076309817141	0.793574876043977
Merged-chr9-74952233-4	chr9	74951718	74952718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	-662.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	6.67518741553827	6.82635814743587	6.33455985413172	6.8562942370412	7.20346497813733	6.91409850384568	0.567607084889146	0.0461163604389514	0.271586815726822
Merged-chr10-77966217-2	chr10	77965717	77966717	+	897.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 3 of 33)	intron (NM_138301, intron 3 of 33)	3655.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	4.32033541775636	4.46963163303502	4.99152564760795	5.03597799979086	4.81262083185018	4.9893149141094	0.764784097227923	0.0858613781917243	0.388065922920783
Merged-chr6-54955266-4	chr6	54954824	54955824	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16337.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.90665614222703	5.71565309730383	5.69878217483711	7.50896507898395	7.87257158860734	7.56828198414499	2.97147857534574	7.64714771226687e-26	1.47977643451698e-22
Merged-chr14-101593268-2	chr14	101592768	101593768	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	15923.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.42670204920537	3.23570424382888	3.23458120515219	3.1786232276136	2.95207384093763	3.41669608469932	-0.47680642840748	0.473523307114919	0.82090428702971
Merged-chr16-64756536-4	chr16	64756068	64757068	+	999.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14371.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	2.75062503846343	2.92965609340664	2.83547644404042	2.91514013921076	2.72873407796098	3.24982028648347	0.64014918439522	0.386370015395969	0.7671030298863
Merged-chr3-22087940-3	chr3	22087443	22088443	+	721.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	11291.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.95859122394344	4.11110033436127	4.11271990947592	4.20547356347247	4.20120227025666	4.22698197288176	0.424403089341038	0.367397333160461	0.752316901627062
Merged-chr10-127642948-4	chr10	127642462	127643462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-24.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	9.21432002963903	9.02398227554109	8.80514083952482	9.12065649750065	9.48983614922306	8.91753241755118	0.238581780991398	0.332373515641866	0.723540667531868
Merged-chr4-134005131-4	chr4	134004630	134005630	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4266.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	3.35387498161488	3.00398237315224	3.14901603033944	3.37230665324383	3.42963680125905	3.39637807848476	0.890965775329297	0.164694414922414	0.539311014437789
Merged-chr1-16059920-4	chr1	16059431	16060431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33394.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	5.3772177168393	5.4329024781929	5.1705221481502	5.02265208069495	5.33820195112267	5.20125012854718	-0.27962896315952	0.438546302078971	0.800615097962194
Merged-chr13-101766217-1	chr13	101765717	101766717	+	806.0	f0_balb.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	2000.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.25749344013991	5.04717821902237	5.25241061194781	5.30743918429473	5.39012128642151	5.46569449717409	0.403917373933565	0.245303494183239	0.642393755173178
Merged-chr18-64511742-2	chr18	64511242	64512242	+	823.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142950, intron 4 of 14)	intron (NM_001142950, intron 4 of 14)	4815.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	6.23498063958816	6.63088488411833	6.55670576407356	6.09653148495193	6.43173405959509	6.61562123214293	-0.145674115949067	0.632565391633138	0.895571551612667
Merged-chr15-66866148-3	chr15	66865663	66866663	+	776.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25230.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	4.17765144416958	3.63384148841424	4.21067464737588	4.43360022749721	4.17494144466718	4.23388518551248	0.711093739312125	0.182284261017955	0.565045218149313
Merged-chr7-92878175-2	chr7	92877675	92878675	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	B4A|SINE|B4	2922.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.90506767442908	7.00900923681116	6.90327552408253	7.12484380112792	7.51347822258465	7.03226985121412	0.46895149942331	0.0752727521199648	0.361275291152819
Merged-chr6-29244736-2	chr6	29244236	29245236	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-27752.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.59875722269046	3.1510487140093	3.26604160567276	3.34741717557598	3.42047715682129	3.33882742702649	0.0522383160640141	0.93442222236874	0.985707838096286
Merged-chr3-109537919-2	chr3	109537419	109538419	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 15 of 26)	intron (NM_020505, intron 15 of 26)	-36088.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.08725480068716	4.12002950444276	4.08731385020492	3.78706253214216	3.87227326233344	3.86193847707282	-0.782430756403159	0.116385312246593	0.455533612183759
Merged-chr1-182284054-2	chr1	182283554	182284554	+	806.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1253.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	4.66151401554667	4.56521338106945	4.59598605245725	4.51445742388078	4.26294989615995	4.62234366081014	-0.359922972434455	0.405900673410147	0.780439975167702
Merged-chr2-48950195-7	chr2	48949673	48950673	+	904.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355296)	promoter-TSS (NM_001355296)	61.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	6.48011603828281	6.59045103066802	6.75452033685823	6.75674179862307	6.87260171543816	6.91374259699489	0.380545065704652	0.139651145141018	0.499316452599424
Merged-chr1-86471567-2	chr1	86471067	86472067	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	45238.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.71497478349928	3.36867210240531	3.60893192786029	3.51459371116484	3.76053852274361	3.51564444094596	0.130865360761228	0.823715274427752	0.958451755471188
Merged-chr17-29095508-4	chr17	29095006	29096006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007669, intron 1 of 2)	CpG	1737.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	6.29231662409259	6.10642401471606	6.01978819477232	6.06091433545457	6.05286106838686	5.60006792008982	-0.367191004780727	0.248802981981473	0.645819769301048
Merged-chr16-57230975-2	chr16	57230470	57231470	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	496.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	8.10943140595829	8.09188043656727	7.94589322081975	8.16399219036012	8.35080200736075	7.91418384463712	0.153951481446852	0.504042596623968	0.837420592739604
Merged-chr3-104219869-3	chr3	104219346	104220346	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159354, exon 1 of 21)	exon (NM_001159354, exon 1 of 21)	560.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	2.66106064889008	2.5539493160431	2.77439753800251	2.43587283087246	2.50653667359441	2.7284475281033	-0.596452090762133	0.448447384038769	1
Merged-chr17-36016554-1	chr17	36016054	36017054	+	616.0	f0_balb.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4006.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	4.50550718518371	4.58057337167467	4.08019323966981	3.91097844209079	3.88349437690222	3.9963521189603	-1.39155121026356	0.00547537479662671	0.0653089142886634
Merged-chr7-55910217-1	chr7	55909717	55910717	+	647.0	f0_balb.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	52276.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.29357407408714	7.14427977625318	7.49824192438308	7.48256800090595	7.81684825843002	7.34455756731718	0.379902238104437	0.144141976739013	0.506835936464663
Merged-chr19-4182762-2	chr19	4182262	4183262	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-7283.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	4.47550474873127	4.04496778388943	3.89416427850951	3.89679469860922	3.74508360503534	3.74546285762498	-1.12141107319301	0.038790119857449	0.244240855862987
Merged-chr7-101548993-4	chr7	101548498	101549498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6804.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.23263352611743	6.86325279667353	6.62773477571373	7.85811465833448	8.23887008379041	7.53381776983492	1.42839832687318	2.53352236549931e-06	0.000122992607344496
Merged-chr2-27311802-4	chr2	27311318	27312318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	MIR3|SINE|MIR	-64515.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	6.05025157858911	5.80203091093855	6.15575071439323	6.01316763413212	5.60245491624573	5.8358574543094	-0.320170198538795	0.32215529715799	0.715589724600332
Merged-chr7-130867440-4	chr7	130866931	130867931	+	899.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 1 of 9)	intron (NM_133942, intron 1 of 9)	1707.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	4.16311647074152	3.97538127878594	3.89963124948163	4.25451023801697	4.36428061416607	4.07523115819226	0.623947706679109	0.203815656348274	0.594024469127845
Merged-chr5-124424882-4	chr5	124424390	124425390	+	941.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081203, intron 1 of 31)	CpG	712.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	7.23289429538432	7.55993510483426	7.59134496673228	7.6927515547106	7.88904077907584	7.61040214483882	0.396878652186296	0.103431033525774	0.428642765096753
Merged-chr15-67342273-2	chr15	67341773	67342773	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045140, intron 7 of 8)	intron (NR_045140, intron 7 of 8)	115504.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.08328722854145	2.01871646986213	2.09755268251429	2.17571304755624	2.05131897693919	2.30396813770167	0.822844184458321	0.36145011865473	1
Merged-chr1-172215188-2	chr1	172214701	172215701	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009813, intron 5 of 10)	intron (NM_009813, intron 5 of 10)	4694.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	3.07213488015397	2.96093459977824	2.99406918528243	2.7042070279002	2.62184023925125	2.88812064277478	-1.44159017703279	0.0511412097485698	0.288225262852818
Merged-chr12-101958299-4	chr12	101957789	101958789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-46.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	7.40624006906214	7.77180039551183	7.5836659535775	7.55768609902231	7.83628456558274	7.62145081242477	0.122065237136788	0.614983345186685	0.887675470332189
Merged-chr1-181233487-2	chr1	181232987	181233987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-21509.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.34851421782855	5.71399568576709	5.86977255896109	5.444777564893	5.62470850648228	5.66242439826933	-0.138174165659483	0.68936778987019	0.917319650405699
Merged-chr2-31087855-2	chr2	31087355	31088355	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	8645.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.48304598812201	5.34315905471912	5.49214298291946	5.57513689282966	5.251245722897	5.58229143043954	0.058860212331792	0.8639843063358	0.968269312109804
Merged-chr3-146150681-2	chr3	146150181	146151181	+	784.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	507.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	5.59760057175747	5.28002127868006	5.19452755519875	5.34304553582363	5.02042932912103	5.00776508502257	-0.487353186870258	0.195450507297638	0.583096846154808
Merged-chr16-16855007-3	chr16	16854477	16855477	+	716.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9008.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	2.97772043142689	2.62340305516626	2.98616457152192	2.89386537134818	2.83484923755571	3.27788818376445	0.65529811272339	0.385117998830875	0.76623192225821
Merged-chr8-73234182-4	chr8	73233685	73234685	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	119355.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.31647590295582	4.92121093509692	5.46310897134292	5.56374402580438	5.2754195713713	5.22106142622701	0.238977755869233	0.530983939532283	0.851363932161699
Merged-chr6-57749312-3	chr6	57748874	57749874	+	809.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	46919.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	2.77935446344997	2.9189933664304	3.06179520602841	2.94720846749105	2.72256661113258	2.90049895811303	-0.313868258298237	0.660235663055753	0.905906890165946
Merged-chr1-36612713-4	chr1	36612198	36613198	+	938.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	intron (NM_201365, intron 6 of 9)	-19366.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	5.88652081444276	6.18795715482923	5.93439911081602	5.89874342399298	5.92463352657753	6.08618126170221	-0.0847238066054606	0.779726563505679	0.945896107312523
Merged-chr2-181274913-4	chr2	181274431	181275431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	MTEb|LTR|ERVL-MaLR	13035.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	7.82806583585534	7.91218607006358	7.83941168592705	7.96834428452157	8.33800986422261	7.87091712593406	0.316569611091011	0.183060986358536	0.566085379224821
Merged-chr1-183980876-2	chr1	183980376	183981376	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53122.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	6.45142202171406	6.40664738129581	6.50908961952023	6.60237153592075	6.65834120744207	6.99769699621644	0.481463118192399	0.0773437785714192	0.366806561833608
Merged-chr19-37018661-4	chr19	37018155	37019155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	92576.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	4.95507108971015	4.79991144112955	4.73843575681151	5.79698835753267	5.54160747126122	5.36246735158475	1.51085495776743	5.32783511847616e-05	0.00166849267797578
Merged-chr8-25091300-4	chr8	25090807	25091807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	10504.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	7.35507180076659	7.41619808730204	7.29607804126109	7.27516700207996	7.64835177221493	7.54283387059152	0.208896792180126	0.385036023816668	0.766167913471812
Merged-chr5-43872457-1	chr5	43871957	43872957	+	741.0	f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	3648.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.13467275880056	5.9219006600172	6.37399405766964	6.37359460547035	6.31031811514999	6.30184353238048	0.308830478729294	0.291498787098011	0.689089386291402
Merged-chr5-99380400-4	chr5	99379906	99380906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-127479.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.4106697593012	8.4875299374665	8.1589070613972	8.30695946107266	8.62764454332649	8.06315890244641	-0.00297812883646854	0.990440638243687	0.997888101359545
Merged-chr2-109890845-4	chr2	109890358	109891358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011699)	promoter-TSS (NM_011699)	-20.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	7.33140105995721	7.32123862286507	7.26561712968458	7.21842634449194	6.77568534254396	6.93990336637006	-0.479908332672489	0.0599419290456889	0.316977949287174
Merged-chr15-39944029-4	chr15	39943512	39944512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-18.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	8.01090811096772	7.97317285639507	7.69935662380617	7.59354587806744	7.55725023325881	7.40472772876252	-0.55214716030154	0.0167441281261311	0.143539293824415
Merged-chr7-128728904-4	chr7	128728402	128729402	+	915.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	L1MD|LINE|L1	11527.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	4.85793552357456	5.43891913540963	5.31145759474721	5.21392185707171	5.24325142185765	5.28224629587009	0.0383150467347263	0.920461627045707	0.982373545010764
Merged-chr11-79527098-4	chr11	79526602	79527602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033711, exon 2 of 2)	3' UTR (NM_001033711, exon 2 of 2)	-3340.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	7.93665522739423	7.75258501441502	7.66428048793189	7.51242748166809	7.78268799074318	7.43025850234651	-0.289645151664166	0.228348940707325	0.623435989709457
Merged-chr16-78199646-3	chr16	78199146	78200146	+	732.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	55808.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	4.92794041703123	4.3965976286061	4.7630566782182	5.16864754758308	5.10051459885949	4.86904483492005	0.758311370790123	0.071917610814786	0.352235008574767
Merged-chr12-91735404-2	chr12	91734904	91735904	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	MLT1D|LTR|ERVL-MaLR	51032.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.64100000831838	7.48757164411656	7.51364924870827	7.224158984918	7.56296367916259	7.25501610525036	-0.271163505546309	0.263420837063178	0.661383847170923
Merged-chr4-140991350-2	chr4	140990850	140991850	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	4477.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	2.38028748132071	2.49418768997844	2.52498190120243	2.25319105783573	2.27313926592177	2.40973117047469	-1.02922358138604	0.219579260089331	1
Merged-chr15-27668203-2	chr15	27667703	27668703	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	13339.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.80278892991953	4.85792954901056	4.71569701641046	4.48119326745202	4.96361729401874	4.93127769464112	0.0363938450254656	0.930753151662967	0.984662119275083
Merged-chr18-6515092-4	chr18	6514600	6515600	+	799.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	1008.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	6.04893189524063	6.43186540384595	5.97707234360059	6.38582197001454	6.22714250720672	6.36097851530822	0.238425636492731	0.429537024078546	0.795784671795164
Merged-chr9-21167831-4	chr9	21167304	21168304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2090.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	7.99489685714471	8.2258469436014	7.89684511634508	7.86903073242452	8.53211858521858	8.02297512438903	0.186266160604023	0.488766759891959	0.829423271678195
Merged-chr11-36938301-2	chr11	36937801	36938801	+	925.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	5940.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.81446941923424	3.84127592471284	3.90418528883349	4.14185042696937	3.99557248906385	3.7634242604599	0.401749937995211	0.436799794858039	0.799681606793859
Merged-chr6-82750281-1	chr6	82749781	82750781	+	695.0	f1_c57bl6.idr	intron (NM_013820, intron 2 of 17)	B2_Mm2|SINE|B2	24173.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.36751758709527	3.38594320360492	3.45383730900523	3.44310300428771	3.26540369753298	3.35879756560372	-0.17731501066899	0.765546514322819	0.942148336413151
Merged-chr3-79103957-2	chr3	79103457	79104457	+	923.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 3 of 23)	intron (NM_001099624, intron 3 of 23)	40930.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.06433534724726	4.89072887109085	4.56610011091825	3.70550464549293	3.86341253582025	4.07182605994426	-2.72998634483301	1.27890332551713e-07	8.89757423993557e-06
Merged-chr9-7222752-4	chr9	7222253	7223253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38248.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	6.87697137465755	6.91084987547902	6.86292007324348	6.47357870442183	6.36604700213453	6.56139825555959	-0.669041745683006	0.0085282520693379	0.0901561171624277
Merged-chr8-119911062-4	chr8	119910494	119911494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 1 of 13)	CpG	634.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	6.35839206112396	6.20223397769699	6.47415776921239	6.21640330604283	6.02594117643168	6.33564613354818	-0.257389357647632	0.372056717837295	0.755997445123458
Merged-chr15-25267885-2	chr15	25267385	25268385	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	145879.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.09009859591695	6.22159759665675	5.55869173250839	5.88630141205576	5.86382022755763	5.28188532686175	-0.493943964352857	0.192458277127504	0.579547927157837
Merged-chr5-21412259-4	chr5	21411770	21412770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	12407.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	7.45594641323896	7.476694909351	7.02159074003292	7.75791751651607	8.10254037095549	7.34252977625491	0.638129157273444	0.030186994781429	0.209753608498801
Merged-chr17-57058399-2	chr17	57057899	57058899	+	801.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025877, intron 1 of 9)	intron (NM_025877, intron 1 of 9)	1464.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	2.21412558384086	2.17902315490885	2.35190865827889	2.08162536059111	2.0776065283686	2.23457941467495	-0.859937385116065	0.333871963008433	1
Merged-chr6-72159947-4	chr6	72159452	72160452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36755.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.82092280876923	5.94780459834266	5.88378441080388	5.58569245639453	5.86090652044856	5.87300892632835	-0.188662315960087	0.542700149077838	0.857318248006765
Merged-chr17-55722456-4	chr17	55721957	55722957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25C|LTR|ERVK	-9821.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	6.71076143079072	6.67073782700967	6.93107630407494	6.65616364850047	6.70845958960908	6.82145258896449	-0.0645967273944051	0.802022313831563	0.953134607651061
Merged-chr2-160360154-2	chr2	160359654	160360654	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6911.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.02372671812917	4.67609350849283	5.05264505901576	4.56231669055926	4.62065297175684	4.68709376413687	-0.69159593219049	0.0932780995743833	0.406807700056884
Merged-chr17-26233096-3	chr17	26232603	26233603	+	890.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	B3|SINE|B2	11139.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	4.39230936372564	4.0933810779317	4.68196691426909	4.68283083214235	4.42131838801726	5.01654110877983	0.774532670993018	0.109936971845179	0.443259712798868
Merged-chr4-129081809-4	chr4	129081309	129082309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 7 of 8)	intron (NM_029219, intron 7 of 8)	23538.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.79974784372518	6.5814110911083	6.87320333982264	6.34538905416935	6.51074065424645	6.89042177221072	-0.251791588289803	0.383752158098446	0.764993886451692
Merged-chr19-27429919-4	chr19	27429426	27430426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	-18.0	NR_131940	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	6.87368871907311	7.15765591374837	7.12098764781753	7.07899653013384	7.10176912210374	7.02432027198829	0.0240952229573697	0.921968141349666	0.982542868764899
Merged-chr7-66385998-1	chr7	66385498	66386498	+	571.5	f0_c57.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	2343.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	4.11919156932328	4.24082891208043	4.53559704643144	4.57840661092356	4.69521191640829	4.85995911519265	1.03557500857837	0.0205044678304684	0.164051515311309
Merged-chr11-74896187-2	chr11	74895687	74896687	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197943, intron 1 of 22)	intron (NM_197943, intron 1 of 22)	893.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	4.00576871192351	3.8413271994175	3.9518929752747	3.61675775038641	3.666519586108	3.97313062318935	-0.580234399975488	0.277488479298323	0.674707488501667
Merged-chr5-99373304-2	chr5	99372804	99373804	+	872.474976	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-120377.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.8238991268024	3.58955311912751	3.80084414012206	3.80463296395953	3.36539602861382	3.43702119116384	-0.653052844386385	0.27062216656411	0.667629387731657
Merged-chr2-166656353-4	chr2	166655841	166656841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	57491.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.20609863529135	5.09769356721178	5.09373490567693	5.36764561087025	5.03105205125572	5.28906134175495	0.193726895206255	0.595164071829562	0.879394612218161
Merged-chr19-42016664-2	chr19	42016132	42017132	+	637.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	PB1D10|SINE|Alu	-19406.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	4.39562691843499	4.78963241920729	4.99095838461233	4.67528134354252	4.52989985452727	4.92232226754104	-0.0706269770201723	0.874414825513432	0.970754540400126
Merged-chr10-59974820-3	chr10	59974339	59975339	+	953.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23069.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	5.55657563925565	5.63684987979124	5.48732633197718	4.68586207255249	4.8911837134984	5.15320994385948	-1.33098666938208	0.000313517987896702	0.00722437129241452
Merged-chr16-13671920-4	chr16	13671431	13672431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	73.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	8.86535208156668	9.35990216130043	8.79570321159398	8.91252214516985	9.26368548851847	8.70259518390204	-0.0697512441086329	0.792517571342644	0.949977808464961
Merged-chr15-38672450-3	chr15	38671960	38672960	+	773.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	10556.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.5990700412556	4.7054040436112	4.38736172488028	4.53387682862636	4.52489300549316	4.96019660726569	0.236377603643209	0.593864821782424	0.878679589787363
Merged-chr8-108315802-2	chr8	108315302	108316302	+	884.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	268875.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.15049936326806	3.83274294043958	4.26831016609657	4.0183950401412	3.79671361192243	4.52910832354538	0.143644258717256	0.795514216913654	0.951171392009988
Merged-chr5-130024412-4	chr5	130023918	130024918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-37.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	7.75123258511028	7.83555026214444	7.60347738817874	7.48502211443136	7.73070581232001	7.39139929774796	-0.268754448590891	0.257312914865044	0.654643594321768
Merged-chr8-25446119-2	chr8	25445619	25446619	+	738.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-72640.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	3.42440879240665	3.33646154387429	3.60687048536586	3.36760489264428	3.1904616456936	3.36007025093008	-0.589035788317013	0.333036321601082	0.723935027979521
Merged-chr12-4237191-4	chr12	4236702	4237702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3175.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	6.42118840745724	6.70286787784786	6.67000743668226	6.62236324643567	6.70005899250337	6.6644932746928	0.0981709092623048	0.709434378488915	0.923970319391836
Merged-chr15-31350810-2	chr15	31350310	31351310	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	16949.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	5.34384442180067	5.20572178469866	5.06848292401337	4.75993635936034	4.88673057307229	4.83710522553797	-0.826875803428542	0.0280204937838816	0.200079743136464
Merged-chr19-5689684-4	chr19	5689216	5690216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144868)	promoter-TSS (NM_144868)	585.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	8.14564985444522	8.25669334809011	8.22444263445126	8.19911356372913	8.68804497105651	8.28018840685138	0.286479649871199	0.225142843189178	0.620057224606834
Merged-chr4-132792436-2	chr4	132791936	132792936	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 2 of 5)	intron (NM_001033308, intron 2 of 5)	3928.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.77507364738346	4.41236348256493	5.00905278301715	5.15479409787692	4.80615568650375	5.31792006672444	0.78078036583865	0.0735942544264164	0.356501759464007
Merged-chr2-158413453-4	chr2	158412951	158413951	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	3598.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	4.97554150565265	4.58459370588353	4.39654232059501	5.31273941246683	5.16978150064965	4.79024421570662	0.937243582542142	0.0360577260942599	0.233513110608831
Merged-chr15-67788258-3	chr15	67787747	67788747	+	914.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	470609.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.58317067577385	3.24897705055152	3.60906638744039	3.05238684635059	2.99021887425311	3.07170904846097	-1.95454866123605	0.00391470528248735	0.0511116894939915
Merged-chr9-78522040-4	chr9	78521534	78522534	+	922.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-40310.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	5.62849719911417	5.58188024729497	5.07843446988772	5.85089356118926	5.57144361563818	5.22150770656227	0.219155871712104	0.573737353856754	0.870292198441646
Merged-chr19-5705088-4	chr19	5704599	5705599	+	972.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010609, intron 1 of 2)	intron (NM_010609, intron 1 of 2)	628.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	3.99952097459493	3.73450140429121	3.96987715663441	3.87400698566262	3.84854855402155	4.17367490201978	0.18668747732583	0.720459288961168	0.928182174829506
Merged-chr2-72980493-4	chr2	72980006	72981006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001018042)	promoter-TSS (NM_001018042)	-60.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	8.21984748765967	8.45408630361124	8.6211195078141	8.34206495969202	8.56015223945107	8.59404526917878	0.0893440868071718	0.692530376648333	0.91870248759071
Merged-chr4-6453952-5	chr4	6453435	6454435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	CpG	336.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	7.44094405440747	7.28136138263801	7.21794784809852	7.62596146482269	7.14006496122141	7.2873240214856	0.0697041165896909	0.787717129288771	0.94877064431094
Merged-chr13-95888383-4	chr13	95887854	95888854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	B1F|SINE|Alu	3568.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	8.16212766383039	8.03057074218621	7.79769046694226	7.90931922173766	7.9498198050134	7.7397614880203	-0.196710323923203	0.391296010172598	0.770316284913563
Merged-chr2-4920033-1	chr2	4919533	4920533	+	747.0	f1_balb.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	1037.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	4.88570505460834	4.78880900439021	4.52790472677809	4.11452859621637	3.80029712041968	4.08039163058021	-2.04993898925222	2.17175179723813e-05	0.000782620716953616
Merged-chr5-64958591-2	chr5	64958091	64959091	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	Lx8b|LINE|L1	1505.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	4.58088933985526	4.02793589564606	3.96013930908101	4.39432836796073	4.26127847934247	4.03267086442458	0.0304183796975715	0.954245968636666	0.989495550016789
Merged-chr18-50134877-1	chr18	50134377	50135377	+	662.0	f1_c57bl6.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	6676.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	3.14843749040013	2.87143950801295	2.9489334758827	3.41837069887097	3.54525415135177	3.27559209538722	1.83325014162128	0.00784401582266575	0.0848460403589662
Merged-chr16-17727389-4	chr16	17726885	17727885	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4438.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	5.21037429281544	5.48246699788964	5.49549309257118	5.42610911205492	5.3584905036902	5.47273056960764	0.033337468263413	0.922191854746185	0.982542868764899
Merged-chr19-46186727-3	chr19	46186229	46187229	+	967.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 3 of 39)	intron (NM_178930, intron 3 of 39)	34171.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	3.28607488407662	3.25276118819194	3.16639341799432	3.36729666303706	3.00457809649932	3.29720245174673	-0.0439581438385716	0.945980621062252	0.98796006280508
Merged-chr7-80044430-4	chr7	80043907	80044907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18179.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.63645309930029	5.21958249409708	5.31955230878891	5.3490038567918	5.32931915885219	5.61339710365416	0.0376645763139459	0.916382947590298	0.981249307342287
Merged-chr14-21076027-4	chr14	21075526	21076526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-126.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	6.22655636493378	6.19758377604908	5.8640836937013	5.83683981356923	6.1812154898955	5.64888967645002	-0.327261368824579	0.324132364656917	0.717287790132387
Merged-chr1-80614316-4	chr1	80613806	80614806	+	970.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 4 of 55)	RLTR20A4|LTR|ERVK	51046.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.43348855281287	6.09741919936213	6.26501086418936	6.42820091138308	6.27094445912547	6.24343511665945	0.0743194986641069	0.795176951478036	0.951004454064308
Merged-chr9-31042065-4	chr9	31041548	31042548	+	729.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001115130, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	11404.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	3.31455855625823	3.20330381390519	3.42750011582988	3.38016243160461	3.41471207050395	3.3321909835027	0.258925226928651	0.66755975868839	0.90879890451381
Merged-chr1-164075442-3	chr1	164074947	164075947	+	939.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	13371.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	4.85897778023439	5.02481962069173	4.88681764696397	5.4747314234157	5.4404229608278	5.2078614773507	0.942004655276121	0.00954304514062549	0.0972990687490707
Merged-chr2-75832222-4	chr2	75831709	75832709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172666)	promoter-TSS (NM_172666)	32.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.44838616337924	6.33611199597566	6.49781484471671	6.5007093762381	6.39973603984852	6.50452242288825	0.0661570583568097	0.80320914941135	0.953422605427866
Merged-chr17-50392867-2	chr17	50392387	50393387	+	670.5	f0_c57.idr|f1_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-99267.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.88122395890745	5.02278717597674	5.20604760192749	6.82539626120368	6.96080870329381	6.22263525490562	3.03378251304667	9.0007788958886e-18	4.25532278618806e-15
Merged-chr16-36665133-6	chr16	36664563	36665563	+	952.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	1014.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	8.40633052359413	8.64011913030307	7.68522847090671	8.44370644272889	8.8213199120918	7.96135162551065	0.209349950773936	0.527534984344028	0.850021901187024
Merged-chr5-65484127-4	chr5	65483610	65484610	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133697, intron 1 of 4)	MLT-int|LTR|ERVL-MaLR	8725.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	2.65927738106664	2.37631897083773	2.68745278344867	2.66631051009223	2.74340834400986	2.76085191920423	0.803577662977891	0.309746683147115	1
Merged-chr19-34583420-4	chr19	34582898	34583898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-131.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	7.09163008802405	7.35425492515611	6.75889690490238	7.14942624853782	7.52608319343938	7.04517174586432	0.246541167752014	0.396442421025669	0.773652887901204
Merged-chr6-145211727-4	chr6	145211222	145212222	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177222)	promoter-TSS (NM_177222)	575.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	7.93315740012274	8.2804173077493	7.72605638948605	8.1804357197224	8.63192929581597	8.16384297762499	0.481404245672705	0.071838493540017	0.351888936862173
Merged-chr11-85131791-4	chr11	85131278	85132278	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	8177.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	5.21866049616355	5.39423673236409	5.22662272506039	5.45826024654638	5.67180859085337	5.18779735699309	0.357508201397372	0.319936183782732	0.713821257580134
Merged-chr15-103240338-4	chr15	103239849	103240849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-48.0	NR_104427	15382.0	Mm.237064	NM_010447	ENSMUSG00000046434	Hnrnpa1	HDP-1|Hdp|Hnrpa1|hnRNP A1|hnrnp-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding	8.49864923140429	8.66609082955336	8.185956942691	8.36037862322424	8.74247252466538	8.26828649222679	0.0132046792005232	0.95824440218562	0.990000537228272
Merged-chr4-150237867-4	chr4	150237335	150238335	+	739.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	511.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	6.68854846368336	7.11757107364076	7.19407163674767	6.92245840572613	7.27031231582628	7.205112394952	0.194415287151267	0.483429983249743	0.826183906634995
Merged-chr14-45231507-5	chr14	45231000	45232000	+	889.8599849999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	11783.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	5.18351390628363	5.59438690544585	5.66372273084372	5.79663859222176	5.92280280602439	5.94463167834384	0.730411625483999	0.0299114519428253	0.208500903917676
Merged-chr15-73422066-2	chr15	73421566	73422566	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1125.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	5.25164049624641	5.28997962804031	5.35722581256849	5.51380069711549	5.38838425455945	5.3900276005245	0.266807061600713	0.426635361845456	0.793840707522572
Merged-chr8-72318986-4	chr8	72318479	72319479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008452)	promoter-TSS (NM_008452)	-83.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.33436355261346	7.04704198095689	7.14469296793688	7.24081563376762	7.00788055789676	6.97818174386338	-0.150429633140181	0.549418455592509	0.860273914502926
Merged-chr15-64057945-1	chr15	64057445	64058445	+	626.0	f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	1819.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.34868404731316	5.66099733807216	5.88670196209144	5.6478740148899	5.56845478888249	5.75852427837122	0.0269579385295626	0.937113103769212	0.986041955253459
Merged-chr5-117871729-4	chr5	117871225	117872225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	4886.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.82375396729739	6.94991403787361	7.28130698233741	6.84589213431197	7.00450209417608	7.12195714158199	-0.0475978986840326	0.858488384259817	0.966933063363181
Merged-chr2-117040326-2	chr2	117039826	117040826	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80745.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.34405149502538	3.23126887004554	3.35720412204128	3.71687961487551	3.63557912838118	3.54299761365805	1.230248296773	0.035898563546603	0.232853732116132
Merged-chr4-101357527-4	chr4	101357037	101358037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-1289.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	7.69020448186556	7.93468984356129	7.31123203592499	7.93345672509218	8.35782843352193	7.64246187248966	0.48835183486647	0.09806532024953	0.41742408696201
Merged-chr1-93401746-4	chr1	93401239	93402239	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207031, intron 20 of 23)	intron (NM_207031, intron 20 of 23)	27843.0	NM_001271884	404545.0	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	3.19171776409015	2.82942383036091	3.38863988237398	3.23383622993519	3.01351161341776	2.9435107130531	-0.357924149585609	0.619832161804115	0.889979882381751
Merged-chr16-58509240-4	chr16	58508726	58509726	+	856.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	14200.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.69587386642758	6.48040817656919	6.52452228682639	6.73716276350422	6.75623717674623	6.39562996679871	0.124033207447135	0.65149645469958	0.902848242137179
Merged-chr8-22148304-2	chr8	22147804	22148804	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 9 of 15)	intron (NM_011848, intron 9 of 15)	14190.0	NM_001162947	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	2.58393530147996	2.70226858228067	2.69176467572149	2.36077092724433	2.37620397463886	2.38158229468873	-1.84441861842896	0.0284720484259165	1
Merged-chr1-61131848-2	chr1	61131348	61132348	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	153934.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	3.40542694426203	3.48638869343957	3.64363878517739	3.68156091102443	3.52210751418747	3.60953602238242	0.338243474797772	0.550783213870438	0.860794681913026
Merged-chr3-133583840-4	chr3	133583342	133584342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39452.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	6.69440349821588	6.57455178427703	6.21855061726763	6.64257000519327	7.03392418353745	6.61377758873516	0.419387646494908	0.159002489748327	0.531013709888191
Merged-chr7-3709996-4	chr7	3709487	3710487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5946.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	5.58709582495484	5.4319573971126	5.87402955751215	5.78828643946002	5.91853411611346	6.24439126581562	0.642119436806909	0.0563545891635649	0.306040507448238
Merged-chr1-64306406-2	chr1	64305906	64306906	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185017.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.35833984659619	6.89440305796346	6.66906259999332	6.32665352178514	6.67192967606671	6.37482745404536	-0.296969478560862	0.324813997629252	0.717739181095052
Merged-chr11-22287921-2	chr11	22287421	22288421	+	714.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	4.21168045275486	4.54774195062308	4.69082099162836	4.10713873232523	3.9252774724816	3.93519938545903	-1.38253898654714	0.00537939219521308	0.0644133639054957
Merged-chr7-28447238-2	chr7	28446738	28447738	+	627.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022024)	TTS (NM_022024)	-4747.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	2.21249293600936	2.24633748393941	2.45276672444324	2.16857184296669	1.96870166733344	2.33978971842846	-1.00229992612934	0.28753651023725	1
Merged-chr12-40430073-2	chr12	40429573	40430573	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15717.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	5.25605630445664	5.09334539151551	4.93258685113403	5.12237770103138	5.29529152550362	4.83937043751056	0.0109719711178778	0.97752188851156	0.994870669169244
Merged-chr7-99014844-2	chr7	99014344	99015344	+	917.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 7 of 14)	intron (NM_178635, intron 7 of 14)	126300.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.03184553847613	3.16603721826564	3.29244204120842	2.98419398622159	2.89669641113258	2.90012718536968	-1.09377878153661	0.109390761424542	0.441960722570073
Merged-chr11-106735937-2	chr11	106735437	106736437	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-15289.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	6.68152648256499	6.74048700542357	6.4658018513684	6.54817891743233	6.80091959866783	6.54341621893188	0.00427831347234181	0.987388611813295	0.997218304929226
Merged-chr10-93476220-2	chr10	93475749	93476749	+	987.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-12519.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	3.55413997962875	3.62948356225946	3.67061963533698	3.30019315081138	3.26111514804565	3.7395532655073	-0.641088286424178	0.292627119135962	0.689849199032898
Merged-chr3-116277213-2	chr3	116276713	116277713	+	812.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-23729.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	2.81157291561819	2.90884748823348	2.7216976143431	2.90881189657387	2.71706257690282	2.9803912034442	0.24180518636706	0.738476096245806	0.934032187674406
Merged-chr10-100028059-2	chr10	100027559	100028559	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	12238.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	2.82277034022298	2.74630950694229	2.56852489105961	2.69451436306014	2.76514382552171	2.83455696422249	0.22499164988562	0.764227393973917	1
Merged-chr13-89383913-4	chr13	89383366	89384366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	-156770.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	7.09725528121466	7.26406698665284	6.55363641054073	7.99306779907738	8.28774126870772	7.59646986083053	1.42443625133945	4.99302536659976e-06	0.000221224523271583
Merged-chr2-127085649-2	chr2	127085149	127086149	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 3 of 7)	intron (NM_026678, intron 3 of 7)	14992.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	5.55319967435643	5.60187512217905	6.03119157871207	5.57682228215958	5.72436267128698	5.87251777403983	-0.0142107848475288	0.966495989135798	0.992315915860502
Merged-chr3-88502307-2	chr3	88501807	88502807	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1045.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.69998754552932	4.47968774704297	4.23708048060171	4.30907310350995	3.76900230560209	4.00329300592493	-1.21848034418974	0.0188728490142019	0.155448712250449
Merged-chr19-29648419-4	chr19	29647911	29648911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081213)	promoter-TSS (NM_001081213)	4.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	6.06166042289219	5.90639126878154	6.39090733487692	6.16279468833151	5.9589327226613	5.96382459082859	-0.156545658430155	0.61511778309324	0.887772023929758
Merged-chr8-70594308-4	chr8	70593811	70594811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023627)	promoter-TSS (NM_023627)	-170.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	6.35285695807086	6.02523176796113	6.11196157684809	6.11317630633149	5.96955157514876	5.91701158778237	-0.289358243057248	0.332616897947779	0.723716858669256
Merged-chr12-16584243-4	chr12	16583752	16584752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	5518.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	4.54524887391413	4.45206289036237	4.42849159757704	4.24430170756184	4.15589948958851	4.22795507140883	-0.726209739259392	0.103180017094946	0.428296315983601
Merged-chr12-51968120-4	chr12	51967644	51968644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	3177.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	6.24065149746073	5.85280551059698	6.08347786800243	6.41989810103337	6.47332729764312	6.20990153264365	0.521117495252669	0.0793517022566532	0.372465529495775
Merged-chr19-12435138-7	chr19	12434654	12435654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7249.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	8.21742948541411	8.05110035658607	7.73206471953633	8.06276824059321	8.32578984025903	7.77929992820771	0.086812027140854	0.740328476500202	0.934509856785078
Merged-chr5-125273265-2	chr5	125272765	125273765	+	767.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67829.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.780272021255	2.76985278106991	2.85114963032105	2.99061611877105	2.74596508661416	2.92390438580649	0.447876759372541	0.528385947059984	0.85053360857083
Merged-chr8-77422303-2	chr8	77421803	77422803	+	609.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	MLT1A1|LTR|ERVL-MaLR	-94753.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	6.07887521542143	5.94100250992128	5.58723482374646	5.69753932356166	5.71919085795373	5.4984117018159	-0.446174916688146	0.1784193114698	0.559589674661858
Merged-chr2-153543189-4	chr2	153542685	153543685	+	804.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-13214.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.66051557641424	3.49713129647716	3.59976051220658	3.08671241557898	3.30183407045128	3.4592790008424	-1.15183771535233	0.0645596256101358	0.331147659213918
Merged-chr9-107634661-2	chr9	107634161	107635161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	681.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	6.18627835076935	6.21036094594523	6.36653307129648	6.57231890558656	6.36788091331405	6.64711690442368	0.454840223189249	0.100197884991856	0.422118658012372
Merged-chr2-133511092-2	chr2	133510592	133511592	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41067.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.18583109385229	2.99530048034907	3.14588530083462	3.16171930151317	3.10281829735226	2.77541914098605	-0.363368588646712	0.612532535061851	0.886809583237807
Merged-chr12-73692521-3	chr12	73692027	73693027	+	665.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 3 of 13)	intron (NM_008856, intron 3 of 13)	107731.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	2.43969766616402	2.17799699376978	2.4180669197062	2.20227698159821	2.20344129236241	2.16332044435755	-1.09924396714835	0.216934995221485	1
Merged-chr5-43235314-4	chr5	43234810	43235810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	44.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	6.50630413416662	6.47814114184839	6.35927862468646	6.64025559882027	6.27921860638486	6.52953881132418	0.0515449217440789	0.852879723764678	0.965546660322955
Merged-chr11-82015324-4	chr11	82014827	82015827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-20250.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	4.27319372338969	3.94457901244768	3.53579837253737	4.22772901844075	3.51486347099311	3.73290509216077	-0.263576446016233	0.683189971126631	0.915246431670795
Merged-chr14-30597336-3	chr14	30596811	30597811	+	826.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	12999.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.67880069418311	4.32236609998175	4.75484390106849	4.92554289186637	4.90898126033827	4.78251091442601	0.665788698736962	0.11239325472688	0.447764911391086
Merged-chr7-123176065-2	chr7	123175565	123176565	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 9 of 23)	intron (NM_144925, intron 9 of 23)	-38801.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.0102374439851	2.90104477811234	2.86728620824415	2.94399129470496	2.78962016062856	3.11753609630843	0.099291124828069	0.887441956371868	0.973836995667151
Merged-chr9-35122025-2	chr9	35121525	35122525	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-5161.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	4.47719737166528	4.13532651551882	4.40825190202293	4.84775469856973	4.4227960364278	5.21109429619288	1.22048326936389	0.0117154697664315	0.112358322766854
Merged-chr4-135981698-4	chr4	135981208	135982208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5536.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	7.06936355066234	7.11791632695271	6.84891981990111	7.07722713457774	7.15008670858428	7.06288218170221	0.112811552999506	0.643728153078626	0.899982057956958
Merged-chr12-31634045-4	chr12	31633533	31634533	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007530, intron 1 of 6)	RSINE1|SINE|B4	564.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	6.86809618935637	7.25600525371906	6.52865973130976	7.09432649941929	7.07690226641609	6.47055315517974	-0.0126370363920593	0.969225331635275	0.993022156213313
Merged-chr5-21035309-2	chr5	21034809	21035809	+	888.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-62.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	6.67169938007689	7.00469643180889	6.73165002423938	7.08826503366609	7.37354004943875	7.10637354976839	0.587429957882435	0.0256473590711233	0.189795931482571
Merged-chr7-98809592-4	chr7	98809096	98810096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25516.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.79272866087307	5.2569847408315	5.1823154367369	5.42495672946895	5.42575875328247	5.34854885916556	-0.096121242763153	0.797765639812312	0.951807414581074
Merged-chr9-104234010-4	chr9	104233506	104234506	+	954.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28924.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	7.2686481015691	7.2220008791778	6.95372466185262	7.80822293389489	7.95265752093288	7.08510287045575	0.759718356252993	0.0119867746534444	0.114196879478338
Merged-chr7-110109342-4	chr7	110108831	110109831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	5.3086318119657	5.10009198837056	4.53431362739013	5.03502473035689	4.92973231578776	4.65191952260687	-0.311081242430182	0.487611469846919	0.828533944913187
Merged-chr11-106827270-2	chr11	106826770	106827770	+	832.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 16 of 18)	intron (NM_025481, intron 16 of 18)	38018.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	2.68375530392284	2.71940617354372	2.81978154038006	2.48225717490792	2.4423444601206	2.45403723849403	-1.70561250208752	0.0350059969885454	1
Merged-chr4-53104680-3	chr4	53104156	53105156	+	842.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	55239.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.03963458690615	3.82011352581193	3.68111154276436	3.5522339949083	3.68987339859436	3.69807967464786	-0.702729627191195	0.201910592143216	0.591539655891113
Merged-chr4-119962301-2	chr4	119961785	119962785	+	627.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	147607.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	2.85037502008261	2.5237529448015	2.66429847131929	2.79242674113956	2.54638917644936	2.80094531261368	0.145983285139209	0.850990919224571	0.965045553013849
Merged-chr5-130170283-2	chr5	130169783	130170783	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1536.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	3.86739473521804	3.88119615281324	3.9011725591155	3.8103002666093	3.86369713234899	3.71157326916244	-0.254598499442564	0.622051583885951	0.890937721901588
Merged-chr1-149923842-3	chr1	149923352	149924352	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 2 of 17)	intron (NM_008869, intron 2 of 17)	-1413.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.3628117046029	4.3533708667451	4.68438198577077	4.3297608461944	3.91471089291211	4.640628346476	-0.388788430576697	0.444769433875427	0.80451094486883
Merged-chr19-41379196-2	chr19	41378696	41379696	+	654.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	5874.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	4.46923087509714	4.48676345029584	4.78713828364525	4.80532006247375	4.95894333855085	4.81533924860313	0.675767737860317	0.0988317412073201	0.419333642002316
Merged-chr11-97310144-4	chr11	97309650	97310650	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-5566.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	6.87342751576843	6.91532407155259	6.78902806541337	5.55625363442881	5.49887957446589	5.12089905904648	-2.46380898373071	3.84954185610866e-14	9.44875158593183e-12
Merged-chr1-138158591-4	chr1	138158122	138159122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	16504.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	7.66564550685813	7.72019822267799	7.2703769031413	7.43334261170692	7.84401889631107	7.3748713166728	0.003691354238894	0.989093153848465	0.997508825363283
Merged-chr5-137074357-4	chr5	137073873	137074873	+	782.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2101.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	2.58782198982045	2.48502507827213	2.41493019152143	2.59299355227293	2.60056334442087	2.68356358560407	0.716789629014543	0.360980998934934	1
Merged-chr19-10833828-4	chr19	10833342	10834342	+	857.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3784.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	3.52011862137964	3.48228692804174	3.55991502073437	3.54424527247018	3.35949476317462	3.62990098480862	-0.0395908257336436	0.945141158101609	0.987875414328125
Merged-chr19-11055840-4	chr19	11055356	11056356	+	935.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-5290.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.94890074059524	6.39980471514581	6.04603553385169	6.40357705211911	6.80097802005511	6.44170934540815	0.680970477576123	0.0284336626514133	0.201878806167816
Merged-chr1-85989213-4	chr1	85988661	85989661	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	5.58281392816095	5.57152893103194	5.22821143135829	5.53918545572262	5.68491793905969	5.3278175301797	0.103263256790254	0.768145333678155	0.942831449939876
Merged-chr1-180249750-2	chr1	180249250	180250250	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	B1_Mur1|SINE|Alu	-3800.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.18772222716304	3.85507837509984	4.08677179674936	3.93307831171191	3.83140517229868	3.91411956268983	-0.47918466368954	0.34703439518952	0.735199858635661
Merged-chr10-14678494-3	chr10	14677989	14678989	+	944.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025418, intron 4 of 7)	intron (NM_025418, intron 4 of 7)	27000.0	NM_025418	66201.0	Mm.227983	NM_025418	ENSMUSG00000019868	Vta1	1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1	vesicle (multivesicular body) trafficking 1	protein-coding	3.92415992902163	3.93746784348842	4.18376655060079	3.7951774593904	3.93696751740203	3.77392303941869	-0.52006430215101	0.315132099990027	0.70945648744508
Merged-chr4-59816171-1	chr4	59815671	59816671	+	751.0	f0_balb.idr	intron (NM_172468, intron 1 of 8)	LTR33A|LTR|ERVL	10521.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	6.12700086680427	6.33281967754394	6.29142035719652	6.07080975517871	6.16101184114114	6.31266913532408	-0.121523928740492	0.66901655899927	0.909481274363013
Merged-chr19-34518726-2	chr19	34518226	34519226	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8748.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	5.40261422954735	5.34381708733379	5.70906435799169	5.55933502282365	5.70520023765999	5.69451457586816	0.325939015658308	0.327466865946671	0.719679924571505
Merged-chr7-64287593-4	chr7	64287091	64288091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172742)	promoter-TSS (NM_172742)	-79.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	7.79815909509299	8.12034884096899	7.54002887938533	7.69905273215482	7.5328535546982	7.52529032436574	-0.376888132711476	0.138650546234251	0.497556158669063
Merged-chr4-154188671-2	chr4	154188171	154189171	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	17958.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	3.64995553637092	3.36567017550485	3.85970062889547	3.38899580499176	3.42728240838973	3.83584960849327	-0.261587564052597	0.670639883023135	0.910053903576255
Merged-chr6-137694542-4	chr6	137694020	137695020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-40562.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	3.84262160246909	3.47168950726966	3.49468947742907	3.46890891343623	3.49012019886854	3.67368858762394	-0.269858029524974	0.645437991586033	0.900561664422279
Merged-chr16-18343988-4	chr16	18343501	18344501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138583)	promoter-TSS (NM_138583)	-69.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	5.38443911278371	5.20764924623681	5.45000462503726	5.14468744558268	4.81122900159197	5.31036279335865	-0.523277077405467	0.166979517442217	0.542566060892376
Merged-chr18-12972214-4	chr18	12971698	12972698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008378, exon 1 of 11)	5' UTR (NM_008378, exon 1 of 11)	275.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	7.25129707226968	7.71079965973864	7.22092981164195	7.22642658193516	7.70112667131129	6.9365078601426	-0.118016376168225	0.702283109370514	0.921856678043537
Merged-chr9-103109226-1	chr9	103108726	103109726	+	575.0	f0_c57.idr	Intergenic	Intergenic	-2848.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	3.82767654491003	3.76278344288063	4.36610060733516	5.78605094255118	5.87288791636052	6.32181978340551	5.40502427627395	5.62826423685302e-19	3.20764801794566e-16
Merged-chr3-89418444-4	chr3	89417949	89418949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	-102.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	6.83938915899923	6.77795164810073	6.94290158995063	7.09279328771297	6.86063327475457	6.37999158070204	-0.0470193381802791	0.872514977358432	0.970261003150518
Merged-chr13-85505476-2	chr13	85504976	85505976	+	685.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-215990.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.02079156738588	4.95882623565304	4.98448025731584	4.92313426813355	4.9558440892805	4.74437059930238	-0.223368468405578	0.556230688849132	0.86357390983939
Merged-chr17-10371597-4	chr17	10371106	10372106	+	939.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47004.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	5.47238833997345	5.51450679789016	5.48009144044683	5.52917805127201	5.29659400237346	5.29688736288627	-0.214037657150275	0.523079761869967	0.847982949045848
Merged-chr9-25481527-4	chr9	25481037	25482037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026189)	promoter-TSS (NM_026189)	-60.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.32733719316305	7.55719278128311	7.03590328121407	7.26847220182609	7.33454932822982	6.98016935528085	-0.182305172525642	0.497689500701733	0.833770467452658
Merged-chr1-55419138-4	chr1	55418631	55419631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	13185.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.23026818396514	3.22523382586785	3.13718975848978	3.18430155677285	3.10828325600755	3.26688057043876	-0.074703108313736	0.905657092690559	0.978445498047159
Merged-chr19-53477463-2	chr19	53476963	53477963	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12667.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	3.0891481892075	2.81989420854823	2.95914648370548	2.72241988144592	2.68217859410092	2.72320920597155	-1.32034691444249	0.0738124755841116	0.357153247042048
Merged-chr3-96301810-2	chr3	96301302	96302302	+	652.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7833.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	7.45930722516025	7.19990581278602	7.12183582421975	7.47807863994013	7.5738870418446	7.43686522972185	0.333116909061023	0.165878132765778	0.541084333635215
Merged-chr5-120527145-2	chr5	120526645	120527645	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	B1_Mus1|SINE|Alu	15953.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	6.4103611802889	6.26841610698894	5.94730621486648	6.7090462636486	6.47543269745296	5.90371734680098	0.302616894488738	0.377509523002524	0.75996933176866
Merged-chr4-134929429-1	chr4	134928929	134929929	+	581.0	f0_c57.idr	Intergenic	Intergenic	-1551.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	4.98701600279225	4.79818693503165	5.4157460906263	4.99092198994405	5.16670230119277	5.55557486464788	0.349368548721893	0.401300430280574	0.777412139196917
Merged-chr1-86411171-2	chr1	86410671	86411671	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15158.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.60914567354977	3.41528325270625	3.67334746929205	3.55537016484194	3.34461209228296	3.58909196913676	-0.259868267110404	0.655559574467867	0.90429384180742
Merged-chr3-86947196-1	chr3	86946696	86947696	+	572.0	f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-26312.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	5.14854498192807	5.61363372003832	5.21538889383553	4.237089204504	3.99162438747622	4.12644562343651	-3.05753376801456	8.71999123912571e-11	1.17406639324461e-08
Merged-chr13-5859326-2	chr13	5858826	5859826	+	701.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.00648406746661	3.77842693724128	3.90683137113614	3.52956900409229	3.5808998265831	3.87935535222983	-0.778657363622727	0.156299996991057	0.526705416719257
Merged-chr15-95884796-2	chr15	95884296	95885296	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-54724.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	3.756626455359	3.76737546491132	4.08673263307947	4.14058167180014	4.04228249336434	3.64030535520333	0.284415698221372	0.606227225458796	0.883909633699718
Merged-chr19-7494373-4	chr19	7493866	7494866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-72.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	8.61025876461806	8.89835293723571	8.55467124185646	8.49208665519843	8.6932435707301	8.51383797996665	-0.177241575028479	0.419031078799737	0.788801788481746
Merged-chr16-10695173-3	chr16	10694673	10695673	+	809.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 21 of 22)	intron (NM_177562, intron 21 of 22)	90363.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	3.14594576363488	3.16990064924506	3.29756650099487	3.08461252339405	2.97879915030716	3.02647266744945	-0.778017084203754	0.233615007804454	0.629836294896575
Merged-chr1-74390776-4	chr1	74390276	74391276	+	923.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-833.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	5.28460922654978	4.86816056507341	5.10813593180162	5.10760020363307	5.20565298889957	5.30064301307994	0.218392954859513	0.560181549850029	0.865180258003177
Merged-chr4-141791768-1	chr4	141791268	141792268	+	690.0	f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-1124.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	4.32016805496548	4.27564754735344	4.05347808154223	4.36744136339799	4.54981885533744	4.49572496537578	0.638184409867318	0.162209239566536	0.535591771804088
Merged-chr13-37346732-4	chr13	37346285	37347285	+	828.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	1440.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	7.58987761726435	7.74549356149275	7.42930189866528	7.91331464896083	8.14564135128833	7.46432924752748	0.40578998672296	0.132458013390059	0.486990384330152
Merged-chr16-65549132-4	chr16	65548619	65549619	+	969.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 2 of 5)	CYRA11_Mm|Unknown|Y-chromosome	13578.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	4.88305385698595	4.87659178495816	4.78827850074498	4.98163080223949	4.9336550007106	5.00210802874256	0.256186986114647	0.496445530805263	0.833046085446241
Merged-chr17-57059568-3	chr17	57059086	57060086	+	924.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025877, exon 1 of 10)	exon (NM_025877, exon 1 of 10)	277.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	3.03598499697569	2.87634793476774	2.84645442109707	2.66956177310124	2.57456932806388	2.59802898415742	-1.73126561439996	0.0250621793632424	0.187314634012097
Merged-chr14-20828576-5	chr14	20828080	20829080	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8082.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.98526866759731	7.13547019929291	6.83153660373615	7.3642277149888	7.53274225664193	7.4537458887378	0.679789144261907	0.00511892267855126	0.0621712623320528
Merged-chr4-58613242-4	chr4	58612744	58613744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59753.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.00067940487369	5.3242466097335	5.15088874515095	5.49148286965531	5.52001491814337	5.215962807243	0.510866259194694	0.157218257174736	0.528302105766716
Merged-chr5-115508129-7	chr5	115507572	115508572	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	1396.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.94143262984133	7.15754822803497	7.2604310084387	7.16907675856451	7.27424669306929	7.33982138139447	0.209896407399596	0.389674755479323	0.769291741623303
Merged-chr10-108140931-4	chr10	108140414	108141414	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21486.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	2.60420809836874	2.62954137757346	2.82100211378287	2.58532828172743	2.57893754366108	2.77543552250354	-0.212676492127772	0.77848152640841	1
Merged-chr1-16696790-3	chr1	16696305	16697305	+	778.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 2 of 4)	intron (NM_001159711, intron 2 of 4)	8349.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	3.62618099529695	3.60016699706239	3.73287096330993	3.36298173962607	3.33893217253977	3.25601782803215	-1.23750466394705	0.0374937152987889	0.239306442562319
Merged-chr9-72965523-4	chr9	72965021	72966021	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163725, intron 4 of 6)	B1F|SINE|Alu	6736.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	3.67973531384298	3.3207014724792	3.54783126374327	3.40641976975609	3.30251980069242	3.34154863371941	-0.661216212196197	0.274724629444236	0.672147114659483
Merged-chr1-36437423-3	chr1	36436912	36437912	+	886.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310517, intron 4 of 8)	intron (NM_001310517, intron 4 of 8)	7859.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	5.42476750142854	5.05362507500206	5.78555434239765	5.32056514076422	5.42185285620381	5.62883253664255	0.0283168915444547	0.941248308523816	0.986929673509898
Merged-chr7-35081182-4	chr7	35080675	35081675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24609.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.68813083002642	7.96325487590159	7.53016010237973	7.57121311811315	7.84449205253644	7.43911862155155	-0.156678288130013	0.539692029337653	0.856057704035328
Merged-chr4-129875597-2	chr4	129875097	129876097	+	846.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30629.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	2.82676465671606	3.03262616077761	2.83865158408946	2.87231913576983	2.81768763086431	3.03172882539262	-0.00414123544723104	0.99531348850042	0.998961028701257
Merged-chr4-133092799-4	chr4	133092237	133093237	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37896.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	4.32190193889977	4.40362726944717	5.05837957727845	4.78364049778635	4.850342760552	4.92749879639505	0.527862454715224	0.252750443023508	0.650103828843896
Merged-chr7-67460036-4	chr7	67459543	67460543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87185.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.51044774697255	7.6946852759357	7.55189065247057	7.25070840240365	7.56413121364228	7.45884521251906	-0.227574636311061	0.335625520731586	0.725765439045552
Merged-chr5-8346549-4	chr5	8346040	8347040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	21620.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	6.02792791962989	6.01803513921167	6.00766326403691	5.7800313071171	5.71096601537536	5.85718952087987	-0.425693748026099	0.149527552231319	0.515961080764456
Merged-chr15-64240924-3	chr15	64240421	64241421	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	71752.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.28811810969221	5.50902472358569	5.45737201165673	5.38474370563866	5.41387321622463	5.60252273861482	0.083704927640819	0.804012620569672	0.953557286986578
Merged-chr6-87496362-4	chr6	87495874	87496874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175476)	promoter-TSS (NM_175476)	-47.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.47801470274579	5.38809787172872	5.38075463908838	5.52116021205812	5.59678657026828	5.79712196972753	0.413347956623798	0.208516481359734	0.599441659099668
Merged-chr8-103972157-2	chr8	103971644	103972644	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129481.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	2.44793472788793	2.6471018723345	2.68755766559144	2.36109577999479	2.48702150243412	2.45086782259622	-0.982461731016834	0.229265356431092	1
Merged-chr5-146824739-4	chr5	146824247	146825247	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8143.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	5.30060359876434	5.088874659002	5.72419734515126	6.28040326935649	6.29176764634589	6.17414675608126	1.57291384017136	3.021123635596e-06	0.000142587439291363
Merged-chr17-34047499-6	chr17	34046873	34047873	+	867.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317722, intron 7 of 64)	intron (NM_001317722, intron 7 of 64)	8235.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	5.76760632063385	5.66928763921909	5.85171815455923	5.94312650044863	6.13174059943175	6.11673702979234	0.543144470052658	0.0692862373378929	0.344435917102623
Merged-chr17-23827921-1	chr17	23827421	23828421	+	963.0	f1_c57bl6.idr	intron (NM_026305, intron 2 of 3)	intron (NM_026305, intron 2 of 3)	1188.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	3.35601513884909	3.65948066377373	3.78344618985055	3.91460671702851	3.6649235411628	4.08424508008658	0.93686222083232	0.105931552899186	0.43446438704272
Merged-chr3-34069139-4	chr3	34068637	34069637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001113188, exon 17 of 17)	3' UTR (NM_001113188, exon 17 of 17)	12217.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	4.64541676908496	4.89018464974167	5.08390693028299	4.62368786022503	4.74927774009449	4.64610928194069	-0.454204240307283	0.271639057444279	0.669011179275524
Merged-chr3-121371630-4	chr3	121371132	121372132	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54909.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	5.13386015356518	4.90917084359732	4.87905692511667	5.06499716066682	5.38072280469322	5.02112143102932	0.406141749425874	0.29084881641813	0.688664305177637
Merged-chr15-41784327-3	chr15	41783835	41784835	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-4660.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.59828854694526	3.48312868931847	3.48244277018215	3.31206601337636	3.29165567603991	3.32863220498235	-0.82907744830662	0.161569780409279	0.53459115191249
Merged-chr12-111437716-4	chr12	111437196	111438196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4965.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.8388129330219	8.86163072489978	8.36178366404599	8.53683896946996	8.87606948282058	8.20650223581665	-0.186910496837432	0.490254391406507	0.830042606694236
Merged-chr7-31126381-3	chr7	31125862	31126862	+	907.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	661.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	6.02716150588204	6.02361088555121	5.88391433727094	6.34745080428204	5.79931943359019	6.13028562920456	0.210197459449259	0.509308155035443	0.84026772146894
Merged-chr13-23564534-2	chr13	23564034	23565034	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2169.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	2.79911481001524	2.89307397335997	3.04564455025775	2.95339827564639	3.01766048508723	3.32808881215872	0.908278695765262	0.19450031472125	0.581822770611366
Merged-chr11-80181246-5	chr11	80180749	80181749	+	677.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2623.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	4.34510189023549	4.50364164436674	4.80773285954736	4.64913534306113	4.48890392185046	4.6900460083067	0.125941325366764	0.77355014462009	0.94412263195524
Merged-chr6-125342350-4	chr6	125341847	125342847	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 7 of 11)	L1M4|LINE|L1	-7376.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.88542593851171	2.69306769327822	2.98481783939147	3.30270144400445	3.14684476730234	3.50139889615849	2.18768509082537	0.00271134977281606	0.0389714962681773
Merged-chr5-3359286-4	chr5	3358793	3359793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15400.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.88140906931402	6.65970509082401	6.502754171682	6.65286292999573	7.01738434938524	6.90161602611228	0.266405525535808	0.333809987397967	0.724614206827878
Merged-chr13-21172811-3	chr13	21172309	21173309	+	962.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7122.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	3.46388200108055	3.34782369072772	3.69773944519283	3.23408239310437	3.30174697252835	3.5698643344596	-0.507660320899949	0.408817797079942	0.782383854304252
Merged-chr8-4238007-3	chr8	4237471	4238471	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	-769.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	6.17428911549606	6.4936728724219	6.74915233092839	6.42719770397681	6.5082175062035	6.59164492698376	0.0393303863564692	0.893421446118974	0.975237866709772
Merged-chr11-118212865-4	chr11	118212372	118213372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112700)	promoter-TSS (NM_001112700)	-130.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.65839696373753	7.10001914220338	7.4170211101616	7.10118731787196	6.95373984676869	7.08226762522971	-0.55077997044375	0.0385329019178766	0.243210627534148
Merged-chr7-6287890-2	chr7	6287390	6288390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024928, intron 1 of 4)	intron (NM_001024928, intron 1 of 4)	1310.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	2.23824726213539	2.16788610101206	2.44001609046484	2.10294385347761	2.03063378602217	2.3274281435978	-0.91743907072065	0.315308888224955	1
Merged-chr11-103965143-2	chr11	103964638	103965638	+	819.6999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1587.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.4761583440901	6.07705318266872	6.43996152715398	6.62341469045679	6.611073011776	6.91604807603163	0.608381520241342	0.0354822547163121	0.231271146046914
Merged-chr7-16311705-4	chr7	16311258	16312258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	2175.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	6.98030603407271	6.73777597586557	6.79256456488831	7.18720366062003	7.03908037166062	6.94015990968951	0.335440913999409	0.184139029293978	0.567763528958023
Merged-chr12-3284049-2	chr12	3283549	3284549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	PB1D11|SINE|Alu	25920.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	5.36540612427358	5.83036231050472	6.11096258560309	6.28045170470248	6.25644565393264	6.34612995442294	0.859485663476583	0.0107449042465785	0.105688783554573
Merged-chr15-80256009-4	chr15	80255499	80256499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009716, intron 1 of 2)	CpG	815.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	8.63221336142057	8.63064061047368	8.46624923637529	8.27122498247007	8.2156097512898	8.25628781927406	-0.468133943320507	0.0206950968409266	0.16506879006325
Merged-chr1-24681291-4	chr1	24680808	24681808	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	2390.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.1651337182	4.67595593516446	4.99745997596759	5.46936519035463	5.16213697362879	4.60794314910077	0.360733432856241	0.425508630924794	0.79313893732057
Merged-chr10-19014235-10	chr10	19013661	19014661	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009397, intron 1 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	1249.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.17343781223397	6.70100698662605	6.31843849707405	7.22726895170737	7.29333866602148	7.17496746776962	0.66893053578084	0.0306543024554812	0.211692522094421
Merged-chr5-114100241-4	chr5	114099738	114100738	+	962.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033202)	promoter-TSS (NM_001033202)	-95.0	NM_001033202	100756.0	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	3.87065881109168	3.79358902572151	3.72594321173434	4.02788756990274	3.25615405272113	3.74422928536711	-0.260618693349448	0.677636095278303	0.91306068429495
Merged-chr8-69901690-4	chr8	69901179	69902179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032004)	promoter-TSS (NM_032004)	-505.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	7.83641751680519	8.09699525639	7.77615708468062	8.04582084982558	8.35672403518655	7.88351224254266	0.28769930194867	0.243855925056014	0.640958811221234
Merged-chr2-102701691-4	chr2	102701177	102702177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-4761.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	5.71750523392418	5.46617036452512	5.50995645583826	5.05732670759216	5.02420597928457	4.90438317007772	-1.14447321288516	0.00131179772757468	0.0222699077552141
Merged-chr1-51505851-2	chr1	51505351	51506351	+	645.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27452.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	1.83901752989401	1.84588881362553	2.099587346718	1.71610882833646	1.7468617408678	1.77496883563189	-1.69481802002455	0.107095554543033	1
Merged-chr11-121795109-4	chr11	121794576	121795576	+	843.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35142.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	5.4289207887302	5.32839261270249	6.09228401427896	5.38204727656696	5.40787349989763	5.7714947245067	-0.234223010224055	0.551149199652406	0.860994716969762
Merged-chr4-33099331-4	chr4	33098830	33099830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33226.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	4.69650087286768	4.67749606023087	4.57649437060202	4.47582598913105	4.38748349180653	4.60223305277777	-0.422161029709388	0.31376253706981	0.708155075935247
Merged-chr18-46522269-2	chr18	46521769	46522769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	intron (NM_173423, intron 2 of 2)	3702.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	5.41758183460283	5.5013913290782	5.27112885705501	5.72849229474187	5.83887007747162	5.66916315930911	0.643750997261788	0.0480148226999191	0.277837513810624
Merged-chr14-103929593-4	chr14	103929089	103930089	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-85113.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.34705241414446	4.32825858560863	4.32683460047853	4.07987089738182	3.98758002295729	4.07193919918623	-0.816913314749879	0.0792709898998665	0.372170655509118
Merged-chr5-137865576-2	chr5	137865076	137866076	+	699.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024932)	TTS (NM_001024932)	6182.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	3.99617836752012	4.07481789246901	4.33348828129935	3.93260805499839	3.80997914896515	4.31853088609223	-0.313851570929488	0.547253006466439	0.859256588783723
Merged-chr1-46908709-3	chr1	46908203	46909203	+	701.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	17073.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	3.7618451580211	3.71397604925879	3.8601162452759	3.57089914434232	3.56308646088617	3.83238482370166	-0.415230042214784	0.446448322377272	0.805889760011081
Merged-chr11-114984244-2	chr11	114983742	114984742	+	761.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_145437, exon 4 of 4)	exon (NM_145437, exon 4 of 4)	5644.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	4.54420255856454	4.46232423696687	4.79896254849807	3.86002003114827	3.66576416960892	4.4250507405863	-1.61779859226208	0.00319186047924706	0.0441830840021958
Merged-chr19-56775235-2	chr19	56774735	56775735	+	971.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38448.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	6.96304500254322	7.04122139684034	6.93090464928035	6.75092264282409	6.9311061447591	6.94732497749042	-0.157746914672629	0.520939182520647	0.846846888510977
Merged-chr11-30024769-5	chr11	30024297	30025297	+	758.776184	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146016, exon 2 of 42)	5' UTR (NM_146016, exon 2 of 42)	1236.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	3.62173499206658	3.53348902881586	3.59823644172294	3.9428185275685	4.1014518334275	3.93391737218914	1.36310985677391	0.0104584310829267	0.103664948751996
Merged-chr3-142881522-1	chr3	142881022	142882022	+	1000.0	f0_balb.idr	promoter-TSS (NR_152127)	promoter-TSS (NR_152127)	482.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	8.19395554378575	8.17904836912355	8.22234941183748	8.14672800719307	7.88740267935742	8.24704465543498	-0.142454513216384	0.518391370425617	0.845201813272543
Merged-chr9-30427043-4	chr9	30426532	30427532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028874)	promoter-TSS (NM_028874)	-297.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	5.59902918894	5.61697536643208	5.32027296106872	5.4186654888646	5.01992098166304	5.14762293275133	-0.637376189124657	0.0776897533314953	0.36787930054889
Merged-chr3-79088650-4	chr3	79088148	79089148	+	864.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310536, exon 12 of 24)	exon (NM_001310536, exon 12 of 24)	56239.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.92945146688792	5.72873362468776	5.75451904315873	5.5890385627886	5.7892023035279	5.47702029097836	-0.313828892578433	0.331758151439161	0.723039688439974
Merged-chr8-94179855-2	chr8	94179355	94180355	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013602, exon 2 of 3)	exon (NM_013602, exon 2 of 3)	766.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	8.43033505320774	8.68954879786816	8.1990105706329	8.02248683210946	8.5229623639836	8.19427778436062	-0.266632334583009	0.296665585768616	0.693261158217063
Merged-chr11-51820155-3	chr11	51819663	51820663	+	778.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357588, intron 11 of 12)	B3|SINE|B2	37318.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.14198636785983	3.17947895684188	3.45374604089985	3.2622042424024	2.87779660546736	3.52352632014923	-0.0708570262812177	0.919645297106708	0.982077636922415
Merged-chr4-150227407-4	chr4	150226888	150227888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-9809.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	4.72368355182212	4.62815186410394	4.7435496068484	4.7748277062846	4.70310730942995	4.69187537619466	0.0650163537667112	0.870300593184327	0.970065609722504
Merged-chr2-154264640-4	chr2	154264119	154265119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175167, intron 6 of 14)	intron (NM_175167, intron 6 of 14)	6740.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	5.38003664435387	5.52001435545921	4.69009244972271	5.33299333202672	5.16746394826817	4.56582955057556	-0.37203515315309	0.442097291373296	0.803076081297089
Merged-chr15-99028452-2	chr15	99027952	99028952	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	5.1673728903801	4.9727701680454	5.28947585683329	5.12251551889734	5.17778776764327	5.05963277157952	-0.0327489477120517	0.928608686035324	0.983838264232875
Merged-chr11-76590024-4	chr11	76589502	76590502	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12263.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	7.13813748212325	7.29991658528479	7.20131100284756	7.26447239535157	7.27946863283582	7.12230011160745	0.0188112523363901	0.93616157323476	0.986037792257163
Merged-chr1-171665699-2	chr1	171665199	171666199	+	753.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-12662.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	2.96078299939234	3.25436278000621	3.37320283173985	3.4934007089194	3.33018552299987	3.65065274804891	1.1409008946561	0.0807836626700746	0.376047384808479
Merged-chr2-84427497-3	chr2	84426995	84427995	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.02742905464303	4.96705273149421	4.84228554872549	4.78079904477207	5.30675004127311	5.0905490418516	0.284231747396184	0.475152609170146	0.821727753368561
Merged-chr10-13184282-4	chr10	13183740	13184740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 4 of 10)	intron (NM_181470, intron 4 of 10)	-6217.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	5.53622571175286	5.59405336382312	5.91509782851466	5.50661306116675	5.48789479741589	5.90913321553135	-0.0831784296186269	0.809849194964714	0.954819723409146
Merged-chr13-37618978-2	chr13	37618460	37619460	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-207078.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.01174780980563	5.19035234555645	5.29210769101447	4.92941385494972	4.97089679787385	4.80492653681404	-0.540697725138373	0.151479209378561	0.51892964115325
Merged-chr9-116123755-4	chr9	116123244	116124244	+	888.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 3 of 6)	Lx9|LINE|L1	51619.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.5147825000396	4.44583375310857	3.88247714797031	3.83330787494271	3.97167068744297	3.95525373378884	-1.13352883941947	0.0325153693767305	0.219307576470457
Merged-chr9-35634048-4	chr9	35633560	35634560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14142.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	3.75159740863819	3.59710102245165	3.89524956859095	4.44997737713125	4.16600759852789	4.42081454847149	1.80311590683434	0.000474224306545808	0.010081567730982
Merged-chr12-52121026-2	chr12	52120526	52121526	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	23280.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	3.03374669005219	3.06590019912737	3.07818305782966	2.98724135555824	3.21381795920736	2.90464427003694	-0.0366785159931588	0.957119145090466	0.989887454023164
Merged-chr10-76531465-4	chr10	76530944	76531944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146006)	promoter-TSS (NM_146006)	-161.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	4.94743213341	4.94555119195525	4.8829487858996	4.98647293855665	4.8435723080359	4.66892399138093	-0.182292515177165	0.639208221305775	0.897953829221252
Merged-chr1-57436530-1	chr1	57436030	57437030	+	583.0	f0_balb.idr	Intergenic	Intergenic	-29856.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	3.4265298054801	3.35458772292118	3.37153020120101	2.96090850585312	2.74699981684794	2.97480222698841	-2.42634660676062	0.000890731590296148	0.0164738817882556
Merged-chr16-57301766-4	chr16	57301274	57302274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025599)	TTS (NM_025599)	-8923.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	5.06424904927299	4.75317481497982	4.85765369920007	5.28979588037059	5.58022238483165	5.48801541935256	1.14837019646524	0.00201334239870188	0.0311271264049026
Merged-chr2-84522552-2	chr2	84522052	84523052	+	850.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15679.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	4.95025384565968	5.1950775587384	5.07899750946473	5.57331731934193	5.40377528567573	5.10871499902171	0.613857976473569	0.0972335632297977	0.415798660151352
Merged-chr2-34965465-2	chr2	34964965	34965965	+	594.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3693.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	3.05490725679444	3.05756408688673	3.33627248165594	2.88095247162033	2.85903225407108	3.02155592112473	-1.08157461961962	0.116738155184487	0.456206482086735
Merged-chr9-20967815-2	chr9	20967315	20968315	+	936.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010333, exon 2 of 2)	exon (NM_010333, exon 2 of 2)	-7927.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	3.41267638061821	3.63212186948221	3.60487326531876	3.28721127510324	3.30872792295822	3.40825507884716	-0.838186654734498	0.15852020401411	0.530321210019543
Merged-chr6-136808205-4	chr6	136807702	136808702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-46.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	7.86247772027941	8.00213506620624	7.60955998356124	7.7469231463999	7.87720836557838	7.84444074854758	-0.025450503170295	0.91222058938433	0.980305193163948
Merged-chr18-57845285-4	chr18	57844767	57845767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33411.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	6.28122458704999	6.21542289272337	5.75890531189254	6.2878911505179	6.3778062252819	5.73542929903246	0.102061885155623	0.768535286211767	0.942871018290895
Merged-chr15-59729744-2	chr15	59729244	59730244	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65215.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.07115231549672	6.7002148160923	6.62954004625832	6.5503065790846	6.98576703298667	6.97547787792893	0.0492868326019623	0.865314380125276	0.968641478520565
Merged-chr4-131913412-1	chr4	131912912	131913912	+	724.0	f0_balb.idr	non-coding (NR_102394, exon 3 of 3)	non-coding (NR_102394, exon 3 of 3)	6617.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	3.58842189747755	3.49109237016258	3.9905914250721	3.16664736974777	2.96168517037851	3.32823788318266	-2.24059337337887	0.00107803781613617	0.0191016547285048
Merged-chr12-91587115-1	chr12	91586615	91587615	+	601.0	f0_balb.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2534.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.69467123870383	4.48881097970055	4.59023320894985	5.06637882251492	4.72327417437823	4.77929663741509	0.626976253256462	0.129850105366094	0.482060341820603
Merged-chr10-4433144-1	chr10	4432644	4433644	+	1000.0	f1_balb.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	539.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	6.38005353903097	6.87770227201644	6.80372774447774	6.5859753739867	6.98054744306261	6.59065304390029	0.0595297240268684	0.842116805109599	0.963002495523594
Merged-chr16-44142754-3	chr16	44142224	44143224	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028108, intron 1 of 4)	B1_Mus1|SINE|Alu	2915.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	3.50451848867299	3.45515499684699	3.24785364034867	3.10470946840104	3.15553837863111	3.07549031331001	-1.24198095136496	0.0546563530894815	0.300247298334296
Merged-chr15-59744670-4	chr15	59744162	59745162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50297.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.9543057194968	6.66770258620388	6.85167540684193	6.67163227117083	6.94141332344907	6.6613492227974	-0.0863122509685248	0.746385700839918	0.936300236930265
Merged-chr11-107376541-2	chr11	107376041	107377041	+	784.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	94179.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.02994306029594	3.01362546037554	3.25841232750904	3.13608462221391	3.00919472506811	3.32893004224321	0.253567733392164	0.701629580294078	0.92144944785362
Merged-chr19-12798626-4	chr19	12798124	12799124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134152)	promoter-TSS (NM_134152)	45.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	6.91450771697555	7.05558969416325	7.11119191077488	7.35257304170352	7.70724371290108	7.30165568664698	0.669815645142957	0.00824920257748166	0.0879435442161118
Merged-chr2-33871582-3	chr2	33871106	33872106	+	924.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16340.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.08124602377658	5.22041995383991	4.83896507498809	4.52465963712712	4.74713945074628	5.18015866955261	-0.495276464845442	0.247349320017198	0.644265503899033
Merged-chr10-77969424-2	chr10	77968924	77969924	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 1 of 33)	intron (NM_138301, intron 1 of 33)	448.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.04278695020963	6.84593204730413	6.99981925879705	7.48109579169922	7.44234365889538	7.09828131209039	0.594171437510238	0.0184213913131659	0.153043831734001
Merged-chr18-54902720-4	chr18	54902219	54903219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87461.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.53753321943699	6.72151449843358	6.52866285033157	6.69058748384175	6.84650912684719	6.58805438943012	0.185545148654096	0.482210939013271	0.825427202167635
Merged-chr9-99182320-4	chr9	99181839	99182839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42128.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	8.20013159009736	8.18407705074793	7.79035429729948	8.07104360385176	8.32319005777587	7.85527349137758	0.0376208096859524	0.881134687693332	0.97262624933271
Merged-chr6-129212622-1	chr6	129212122	129213122	+	1000.0	f1_balb.idr	Intergenic	Intergenic	25423.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	4.03739814602299	3.63357151056596	3.96252914479816	4.08112123452627	3.97882101167908	4.2579868591329	0.646787816240329	0.217550612633984	0.611573072605445
Merged-chr10-17951040-4	chr10	17950512	17951512	+	838.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2945.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	2.84378080746761	2.81876511664317	2.92523422522825	2.47977025682155	2.65413365538048	2.63235644665392	-1.49082365616181	0.0565729462975956	0.306665909806537
Merged-chr1-139001202-4	chr1	139000672	139001672	+	891.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	23515.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.8021433057402	4.90784166722998	4.63340093591559	4.439230410913	4.39718534685405	5.18001961462413	-0.171951868163641	0.718135814210488	0.927293456311605
Merged-chr18-53149769-4	chr18	53149281	53150281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26511.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	2.85942720704732	3.01553421586115	3.22827522382719	3.33639669297174	2.98175518680759	3.12921847995335	0.518684104919982	0.451771870435122	0.809245753174589
Merged-chr14-57571586-4	chr14	57571098	57572098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026526)	promoter-TSS (NM_026526)	-16.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	7.08372817469407	7.41386771123972	7.22238180675	7.40558778224917	7.56107770803268	7.38248675708357	0.305519719543291	0.207645353089573	0.598510119317417
Merged-chr9-109051260-2	chr9	109050760	109051760	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357933, exon 1 of 4)	5' UTR (NM_001357933, exon 1 of 4)	103.0	NM_001357940	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	3.54372445568591	3.32795680769611	3.24519387914426	3.34527584577521	3.37393083386463	3.59469562118325	0.203942050187858	0.738799185323473	0.93410222770955
Merged-chr10-80681358-2	chr10	80680858	80681858	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-5065.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	4.54390273862738	4.47382086163858	4.36592425889364	4.8194106180232	4.7795529850429	4.98742336392958	0.921275525993031	0.0261803580192228	0.192122972860179
Merged-chr4-126537778-2	chr4	126537278	126538278	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4320.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	3.7579176903566	3.57993282966453	4.1785216273119	3.82174072628291	4.01569047279118	4.11682518557661	0.41271640295785	0.457820699809581	0.812540681905075
Merged-chr7-45560867-2	chr7	45560367	45561367	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	5939.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	2.37330970503075	2.23243035815846	2.60040832046328	2.2600058145866	2.19643756506936	2.36546855708576	-0.88225585065214	0.309100176784574	1
Merged-chr10-34172980-5	chr10	34172482	34173482	+	935.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	34569.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.66352636354762	6.75227493000112	6.7012232044494	6.61004894480369	6.70880376910386	6.82051522434255	0.00851770206816269	0.973216431552574	0.994009507000273
Merged-chr1-138618113-4	chr1	138617620	138618620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	1637.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	7.14190367139886	7.17806765483347	6.68365179668482	7.00183091451595	7.3371220508377	6.93398956626625	0.123129528315676	0.663010839861613	0.906962466720455
Merged-chr18-61110780-2	chr18	61110280	61111280	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037859, intron 4 of 21)	intron (NM_001037859, intron 4 of 21)	5208.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.02505950027662	5.10947766910005	5.52477019612897	5.58014574611294	5.61152177392254	5.92407664029404	0.930957658287387	0.0103874656888453	0.103165462525357
Merged-chr5-64345229-2	chr5	64344729	64345729	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114872.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.90544683294128	6.00216658691579	6.04692705391512	5.14664063779552	5.51300954605039	5.42222071140124	-1.11975424741279	0.000740213160589827	0.0142705495245755
Merged-chr8-104590129-2	chr8	104589629	104590629	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1339.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	2.9914243779079	2.97273027902986	3.1814031885862	2.97475512026341	2.88637344298901	3.19746099695458	-0.127968037633157	0.850681561883483	0.964981271430729
Merged-chr3-35909149-3	chr3	35908661	35909661	+	781.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033623, intron 4 of 6)	intron (NM_033623, intron 4 of 6)	20913.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	3.17511062785148	3.25812783024576	3.34181085609308	3.25879396614173	3.13955462373122	3.24546851056034	-0.183464233364219	0.767999443424768	0.942754893315356
Merged-chr15-101317971-3	chr15	101317466	101318466	+	734.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	24754.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	3.76000677768489	3.61186040806825	3.93532960240962	3.82049337446547	3.28566358733629	4.09177325255112	-0.000392203608419414	0.999501115724624	0.999920050950963
Merged-chr18-57571480-4	chr18	57570964	57571964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-19067.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	5.29572955160675	5.97708178085867	5.80685577254555	6.0545768202749	5.9372004556391	5.84365132083943	0.397154574434369	0.258609011944364	0.656162466533417
Merged-chr11-75653401-4	chr11	75652914	75653914	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	1264.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	7.94741748710863	7.88595504723562	7.49217951976594	7.75692017672054	8.06838140824808	7.67902985023628	0.0784285950308182	0.758759341314019	0.940287421764314
Merged-chr2-112379144-4	chr2	112378609	112379609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024254)	promoter-TSS (NM_024254)	-102.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	5.49372987805595	5.68831941112027	5.40861703616705	5.18414584028949	4.92236803059785	5.07707147369345	-0.967684712621954	0.00651980198448346	0.0742336731698002
Merged-chr3-96630518-2	chr3	96630018	96631018	+	566.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003619)	promoter-TSS (NR_003619)	590.0	NM_001102407	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	5.89902846449972	6.35730878541893	5.8746482136295	6.31767366964418	6.42000863070661	5.88458218366418	0.2787389478225	0.406371724948877	0.780657027509493
Merged-chr16-49800464-3	chr16	49799956	49800956	+	843.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55198.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.22273854078585	3.19727472425489	3.3056045655037	3.23600260254238	3.39112893741979	3.2043950174506	0.187777824375885	0.76215216529762	0.941466112976312
Merged-chr6-72109086-2	chr6	72108586	72109586	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	11478.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.88895744945599	6.15980427932346	5.93845117834119	6.19863543685531	6.36306806054562	6.04768574798748	0.362452538386016	0.226308501337585	0.621278132925779
Merged-chr13-47233294-4	chr13	47232766	47233766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	39263.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.27784889421581	6.40563231708787	6.35148748797265	6.32547110939298	6.51867295767673	6.80409962458958	0.341597353409395	0.230351912876542	0.626192360633515
Merged-chr5-130196426-2	chr5	130195926	130196926	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 3 of 7)	B1F1|SINE|Alu	9246.0	NM_019983	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	3.68963091802213	3.64474451413922	3.66009952025484	3.67589998877076	3.54100092098824	3.67776278978489	-0.126077356327085	0.817052702113509	0.956754861188725
Merged-chr19-3882997-2	chr19	3882497	3883497	+	645.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	RSINE1|SINE|B4	22233.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.49843433619744	5.88677216301802	5.48141794575653	5.68346111192826	5.84671958518739	5.9399727196577	0.323296658031562	0.334148602897258	0.724794373188265
Merged-chr4-11026450-4	chr4	11025910	11026910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-18791.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.33419698079026	4.58158925882653	4.46860154810288	4.37478520470008	4.49120321358446	4.16698988329736	-0.266894444295933	0.557812409805903	0.864360963073664
Merged-chr11-98586703-2	chr11	98586203	98587203	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025661, intron 1 of 3)	intron (NM_025661, intron 1 of 3)	542.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	5.60675877458417	5.90579856789174	5.42072565821678	5.41345308819775	5.7228103386634	5.18208139246854	-0.371681484817162	0.320230105062888	0.714116509165426
Merged-chr2-126860251-2	chr2	126859751	126860751	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164325, intron 1 of 38)	B3A|SINE|B2	16010.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	3.72478471685585	4.05263720373459	4.09405696955564	4.11408970632658	3.97306651551104	4.29263352307238	0.47288904992279	0.357315315292602	0.743882424811519
Merged-chr11-118400166-3	chr11	118399676	118400676	+	886.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	1783.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	4.71285010800604	4.30683097812773	4.86203514544387	4.49592166786631	4.18471210069684	4.47599597551095	-0.631368982819759	0.177845702345051	0.55892688546374
Merged-chr7-122138442-4	chr7	122137958	122138958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021608, intron 4 of 5)	intron (NM_021608, intron 4 of 5)	5417.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	6.05337760725202	5.25340731654931	6.22640385273959	6.02570608987962	6.07340243401922	5.99683404235432	0.221363747300113	0.561500919152559	0.865407801976397
Merged-chr10-80753187-2	chr10	80752687	80753687	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2016.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	6.60243031470617	6.53100541384839	6.65361427275718	6.91093390859899	7.3404981168928	7.25305757416231	0.9097536995325	0.000550635707290466	0.0113324996122249
Merged-chr2-102979330-4	chr2	102978825	102979825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77660.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.7503762918591	4.63515810664926	4.82209040333271	4.43426036369433	4.31669379334644	4.6651893913914	-0.648841556647538	0.128221986218399	0.478885723293709
Merged-chr9-21412431-2	chr9	21411931	21412931	+	880.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045742)	promoter-TSS (NR_045742)	594.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	4.67881206564896	4.80953421367827	4.9637440428706	4.76026742269978	4.5842201494813	4.57413941027342	-0.401759199559531	0.325122853271838	0.717970213571373
Merged-chr15-101128813-2	chr15	101128378	101129378	+	797.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277255, intron 1 of 11)	intron (NM_001277255, intron 1 of 11)	356.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	5.40586705309041	5.92387446195319	5.34223681265888	5.47804218687726	5.3000702858416	5.64082938106064	-0.235406735684195	0.526350450131921	0.849396226961267
Merged-chr10-111997818-2	chr10	111997318	111998318	+	826.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	-554.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	4.799919414164	4.60481263919982	4.40164666972652	4.65602392612397	4.84651817349281	4.51704792730525	0.162364302808986	0.708738056875361	0.92375127577894
Merged-chr7-31148911-4	chr7	31148416	31149416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 1 of 18)	(CAGC)n|Simple_repeat|Simple_repeat	2255.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	4.86174540744182	4.7584047596624	4.47358652698949	4.66512101872684	4.26379074797082	4.62719133524528	-0.465617130425454	0.296808581269253	0.693424948467673
Merged-chr14-31195811-2	chr14	31195311	31196311	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11015.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	5.90100826084753	5.97288198677703	6.42964702389945	5.81005321220509	5.5111406538445	6.20556133526254	-0.439191274342666	0.2226495865812	0.617620026273531
Merged-chr6-113482746-4	chr6	113482269	113483269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-587.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	7.85859074320632	8.12747856001313	7.92576087487277	7.71188659596858	7.83570020811591	7.8558978567692	-0.25146365496678	0.257839227434167	0.655300508619143
Merged-chr18-67308437-4	chr18	67307953	67308953	+	823.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053261, intron 3 of 7)	intron (NM_053261, intron 3 of 7)	19230.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	2.75897976131012	2.65441384192765	2.53116449120963	2.74784533113701	2.68294830389153	2.79849586280715	0.461199563283532	0.541720816483702	1
Merged-chr12-40550200-2	chr12	40549700	40550700	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	104147.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.46347684495789	3.48824692673064	3.45540973137447	3.71206197418775	3.59116579194788	3.88667344880023	0.907356338629008	0.108697363172286	0.440510829453417
Merged-chr9-108847709-4	chr9	108847173	108848173	+	806.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001359573, exon 34 of 36)	exon (NM_001359573, exon 34 of 36)	-6370.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	4.92781457331497	4.46095564109828	4.54432061336708	5.37836516018919	5.08063661383969	4.82955924733702	0.994944500550214	0.0223513398983467	0.173696490897389
Merged-chr7-136308993-4	chr7	136308485	136309485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	40430.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	5.86244106917422	6.13693356749386	6.08117970890793	6.06328923268467	6.21373929835047	6.00637780539763	0.126674729722735	0.669514682324831	0.909692012644768
Merged-chr6-72144357-2	chr6	72143857	72144857	+	830.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21160.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.9726848446916	3.87164967650365	4.78625559975572	4.07199640117301	3.759014288152	4.3167030535172	-0.563145044840692	0.342090048951649	0.731149455774401
Merged-chr1-128016886-2	chr1	128016386	128017386	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	85585.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	4.44108945904087	4.29359883803564	4.10299157191217	4.67727664190122	3.96654351027305	4.57648872871568	0.383498968687344	0.459842288897485	0.81399380957703
Merged-chr7-28447675-2	chr7	28447175	28448175	+	562.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_022024)	TTS (NM_022024)	-4310.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	2.07691194783019	2.04193737731754	2.21046851702448	1.93857954866567	1.80270725658991	2.09039295806655	-1.3754621464715	0.168813715614034	1
Merged-chr5-66150853-4	chr5	66150324	66151324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291226, exon 1 of 6)	5' UTR (NM_001291226, exon 1 of 6)	154.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.90560425083088	8.22396068661778	7.85884347349485	7.93424002671384	8.23181296241603	8.12469905017162	0.131448397688052	0.577815586266021	0.87219514592351
Merged-chr9-90105680-4	chr9	90105196	90106196	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	9124.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	5.29850782550211	5.45829447669255	5.48716599133472	5.41219904234524	5.55898725376931	5.78357960029207	0.329173263685951	0.330357991537621	0.721867972104254
Merged-chr19-46521480-4	chr19	46520966	46521966	+	871.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19818.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.51779789076622	6.11033901984085	6.37586932819505	6.45357985799545	6.65963484474766	5.83651602156274	0.0513064300736213	0.8811941451807	0.97262624933271
Merged-chr19-43526723-2	chr19	43526270	43527270	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2165.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	2.92500693688152	2.75631175969242	2.9301583196021	2.97025679655165	2.73562103714613	2.88221967050393	-0.0367687870370891	0.958762083359314	0.99015359851262
Merged-chr1-167247189-4	chr1	167246672	167247672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	37955.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	3.70958288231622	3.58831252831839	4.12152015633647	3.47753216613019	3.45924421431681	3.93067651108004	-0.6139230129586	0.309423350016574	0.705003874352637
Merged-chr3-52070052-4	chr3	52069539	52070539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	34967.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	7.56196157588191	7.83301925593745	7.21468390307387	7.5972594263549	7.95827425745994	7.03813722130524	0.0423756041746417	0.895036472242805	0.975642051805398
Merged-chr15-84984213-2	chr15	84983671	84984671	+	624.133301	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	3800.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.4279738647817	4.40268553474561	4.44684358179432	4.91679360045584	4.52674072098159	4.68124595276673	0.707909403164591	0.0995551995811725	0.420731832330245
Merged-chr8-108730108-4	chr8	108729598	108730598	+	886.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	15454.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.58931862636113	4.63029607870516	4.61529131850885	4.47548503093459	4.62510525793746	4.47216560294701	-0.192227580225833	0.645168118489949	0.90045202461189
Merged-chr5-121712973-4	chr5	121712495	121713495	+	896.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	CpG	1386.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	5.67669002155819	5.38878613118314	5.60351506286491	6.12463901070481	5.69350292497907	5.55063487780443	0.472366570153383	0.176302882554541	0.556486421902461
Merged-chr11-69033885-5	chr11	69033404	69034404	+	836.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 17 of 22)	intron (NM_001281465, intron 17 of 22)	-11733.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	6.55342147210892	6.66402149720264	6.47759232493824	6.70579664545134	6.59840905734181	6.69098283661787	0.14339729736685	0.578904426792668	0.872437129840066
Merged-chr17-87446133-4	chr17	87445612	87446612	+	992.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007589, intron 1 of 5)	CpG	823.0	NM_001355703	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	6.06953361276345	5.99469601825761	6.05342661185441	6.16401304912481	5.97842600428806	6.02384643766203	0.0309278080696217	0.914561876665114	0.980912729144991
Merged-chr12-70111560-4	chr12	70111042	70112042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	87.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	7.21758679881228	7.24133846142112	7.44020058003304	7.00970438669155	6.767735028059	7.03194412664286	-0.549827211378578	0.0269463263135448	0.195496523980084
Merged-chr15-6387211-2	chr15	6386711	6387711	+	803.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	463.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.83825200335876	6.20313751964543	6.18399507264599	5.79655728405857	5.92224644355378	6.40984150910555	-0.0400591138729562	0.905064242455322	0.978232606263309
Merged-chr5-139742854-4	chr5	139742353	139743353	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-6520.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.59563235795627	3.38737663301438	3.99134341143551	3.60398112472634	3.79846955628777	3.8771473221297	0.296221131210669	0.61602545831156	0.888205650504781
Merged-chr4-62511402-2	chr4	62510902	62511902	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 7 of 11)	B4|SINE|B4	8507.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	1.95976128508931	1.99443728382239	2.12578514155187	1.85719736529936	1.72577214407656	1.93569414187724	-1.71303496528327	0.0988949228982645	1
Merged-chr2-156863044-4	chr2	156862551	156863551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015591)	promoter-TSS (NR_015591)	-71.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	8.54120541204653	8.58216790770306	8.42733044838378	8.36531108634568	8.5662205416048	8.41427544883528	-0.0927913235329868	0.652377833206357	0.902956813304632
Merged-chr14-51481984-2	chr14	51481484	51482484	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_3-I_MM-int|LTR|ERVK	30022.0	NM_009486	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	3.68456119195962	3.59467395165392	3.76111691638451	4.16292809077044	4.46037128451092	3.9412538783817	1.66386261357301	0.00182988271952267	0.0288360612355757
Merged-chr5-92934424-4	chr5	92933906	92934906	+	886.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077596, intron 3 of 9)	MIR|SINE|MIR	36413.0	NM_001077596	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	2.67866205648536	2.64875282657649	2.67715584989564	3.31347320061842	3.28023686464411	3.20135439146884	3.31687189093724	6.458854936292e-05	0.00195998687650979
Merged-chr9-116099816-2	chr9	116099303	116100303	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	75560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.10859485997488	5.60432548592043	5.65808238754375	4.36941284637115	4.6187590676685	4.69350639832271	-1.97479581170192	3.33121603915092e-06	0.000155285055566201
Merged-chr4-35221347-2	chr4	35220847	35221847	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	RLTR11A|LTR|ERVK	4533.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	6.16123768884123	6.1420201090818	6.29599597666403	6.66671027571526	6.63069428304283	6.85040483691276	0.840195815095039	0.00177025413230659	0.0281124942814347
Merged-chr13-55421286-4	chr13	55420781	55421781	+	914.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021489, exon 8 of 14)	exon (NM_021489, exon 8 of 14)	5523.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	3.21278308920481	2.82881407700044	2.85386986872748	3.14944319246438	2.8906153795224	3.05130215320765	0.233563777001931	0.746011195434682	0.936260355453809
Merged-chr10-96351526-4	chr10	96351021	96352021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125314.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.5411536390232	3.3435151915233	3.47349884616258	3.52822673936281	3.68639585286004	3.70323684244301	0.671832258283135	0.239852685650848	0.636770540094307
Merged-chr5-142911140-2	chr5	142910640	142911640	+	840.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4386.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.24863395758689	5.28958863905055	5.70210497035861	5.37720410757583	6.05354373061246	5.95052205574922	0.761004550502854	0.0439404636103938	0.263737870308998
Merged-chr4-135941160-2	chr4	135940678	135941678	+	938.2999880000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024243)	TTS (NM_024243)	-5270.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	4.31244170995784	4.42047870818543	4.29458078173628	4.43288436047467	4.46334178898263	4.49383233137532	0.29643265635646	0.495562285815807	0.832520627461371
Merged-chr4-41136529-4	chr4	41136027	41137027	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026275, intron 1 of 4)	intron (NM_026275, intron 1 of 4)	506.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	6.47786884122937	6.34316653742926	6.63707456054664	6.74032926314472	6.20058480257704	6.64820064023692	0.0931127871752317	0.756271896940563	0.939545863427369
Merged-chr10-89697740-3	chr10	89697243	89698243	+	897.1555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	11380.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	2.89527659882816	2.86261547182357	2.83452371508088	2.49612455393566	2.40929152132565	2.59439307094374	-2.30372693731053	0.00572263171547832	0.067350814224602
Merged-chr12-82448317-4	chr12	82447822	82448822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 22 of 23)	intron (NM_001167983, intron 22 of 23)	136973.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	6.39357812955943	6.44140722581623	6.0410242672435	6.61847306865696	6.69727093292611	6.1030047204929	0.320773549894642	0.310458729591501	0.705829393476587
Merged-chr15-19857851-3	chr15	19857345	19858345	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	672472.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	3.68970397987418	3.80580249689283	4.19057880973601	5.88034724870087	6.0638896529933	5.77022843158708	5.80854364114853	2.39977617192452e-18	1.2325961463796e-15
Merged-chr15-31331152-2	chr15	31330652	31331652	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	RSINE1|SINE|B4	36607.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.59977275621139	4.84123669837227	4.21508251973959	3.9518807252513	4.25892308351864	3.85035816010492	-1.43374473151603	0.00751363548866208	0.0822840986760456
Merged-chr3-88146771-2	chr3	88146271	88147271	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	4399.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.77593064840537	3.80378242421961	4.42082067198685	4.15064882449013	4.24142112224689	4.80279797773967	1.07134742615159	0.0567611989553352	0.307126144015837
Merged-chr12-31952807-2	chr12	31952270	31953270	+	632.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2525.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.86473581379257	3.91395174019951	3.74590259393394	4.04854465932193	3.99595534532448	4.3754291165365	0.871224050438315	0.0915728629420594	0.402843395184502
Merged-chr8-117481539-2	chr8	117481039	117482039	+	588.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16736.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	6.48869110490428	6.31678402033686	6.64971641631188	6.61353124608836	6.62049960195186	6.78450055902845	0.298884905004362	0.267146115863256	0.664550966981069
Merged-chr15-89078412-4	chr15	89077909	89078909	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026485, intron 1 of 9)	intron (NM_026485, intron 1 of 9)	2345.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	5.7083836113803	5.42091447221886	5.45238818610735	5.70084351573916	5.7778975932032	5.21596354538872	0.121848257198879	0.735448956390145	0.932744628746236
Merged-chr2-124608846-4	chr2	124608361	124609361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-1435.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.8903890806563	6.90321983923791	6.84217248757447	6.66248988926262	7.10588539503447	6.87114105313804	0.0313110161646636	0.90573774263609	0.978476927785487
Merged-chr11-102427288-2	chr11	102426788	102427788	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3034.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	4.91512805047526	4.88061142641713	4.82395186501851	5.18055872549623	5.11222575548109	5.33040141920338	0.694222814321617	0.060280521455715	0.317819138975538
Merged-chr7-140999032-4	chr7	140998560	140999560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11684.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	7.16481055646096	7.33115991264404	7.22435455675659	7.24044998924529	7.51231360166771	7.42620298025524	0.232975050283862	0.327034039145755	0.719317370353337
Merged-chr15-25987216-4	chr15	25986700	25987700	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144523, exon 3 of 6)	exon (NM_144523, exon 3 of 6)	2834.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	4.01633290335497	3.68912718635189	3.70975863256688	3.75068965720043	3.96392259789488	4.03159956680228	0.312804234906569	0.561111358150614	0.865407801976397
Merged-chr9-106371263-1	chr9	106370763	106371763	+	576.0	f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	2631.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.09746145066498	5.58736304854275	5.3208431054031	5.46657662873137	5.44833731608322	5.56095599442097	0.257526247334111	0.470918777942771	0.819784379107259
Merged-chr15-101254114-4	chr15	101253606	101254606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12740.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	8.05330497562077	7.69827156103145	7.64914928306589	8.22849893307068	8.40933895572458	7.98875895373927	0.577635467748346	0.020221079579743	0.162610245241641
Merged-chr1-64574577-2	chr1	64574077	64575077	+	907.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 5 of 6)	intron (NM_001037726, intron 5 of 6)	41773.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.24190173648899	5.26227965109415	5.16904154140266	5.34946930775302	5.23628089299974	5.26629564456824	0.11111111384762	0.747284178952643	0.936600911319824
Merged-chr17-17900964-4	chr17	17900473	17901473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13149.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	6.24214226469152	6.13785152971645	5.9293132261056	6.58640849875065	6.78897051383499	6.86495395162976	1.02184420653189	0.000297573925190268	0.00691828196905053
Merged-chr14-70370680-4	chr14	70370169	70371169	+	971.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19245.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	4.19403211216683	4.27882914386874	4.11309065395619	4.1120303339953	3.84996399641798	4.27217336488866	-0.348691890927431	0.480268903458971	0.824537487093219
Merged-chr19-6288173-4	chr19	6287673	6288673	+	899.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	11277.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	3.82211913324578	3.53809725174054	3.59620603597106	3.5916551094205	3.43845567626853	3.81950852864712	-0.149296493233088	0.795873315838337	0.951374777848283
Merged-chr18-46963593-4	chr18	46963096	46964096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4720.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	5.70452686009991	6.13173618128937	5.89256127062456	5.5735787621278	5.75756447109986	6.0216025138373	-0.240758528769328	0.470091317536787	0.819289842432989
Merged-chr19-17319963-4	chr19	17319496	17320496	+	957.87915	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	19509.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.43860068294346	5.45782451002909	5.47750948749377	5.99655376409454	6.01469226985688	5.91489236866975	0.953115987952743	0.00188838932048508	0.0295688932214759
Merged-chr3-88510917-2	chr3	88510417	88511417	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-7565.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.57064715330567	4.4266615181522	4.24387613105302	4.38561674515314	4.33066945105014	4.00517827069838	-0.436612076748063	0.360687016448805	0.746884136691442
Merged-chr7-5015509-5	chr7	5014960	5015960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-48.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	7.56497702860138	7.48107056981813	7.71794102189381	7.75808550625383	7.67572856180074	7.7488370121039	0.203054074336301	0.360754418350389	0.746938274913623
Merged-chr4-109457018-4	chr4	109456506	109457506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013876, exon 2 of 3)	exon (NM_013876, exon 2 of 3)	19499.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	6.2774363256842	6.62059149243945	6.09647687865433	6.53526175317145	6.73317791931376	6.134533562191	0.231812162948055	0.472983484476663	0.820601745007875
Merged-chr1-152152619-4	chr1	152152105	152153105	+	835.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62285.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.49638572537448	3.43366920140673	3.48027139476416	3.59212585114218	3.28695677047427	3.60419974771024	0.0950014632915344	0.872194163162628	0.970261003150518
Merged-chr11-87018224-2	chr11	87017724	87018724	+	669.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24462.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	4.38386593821727	4.47516934593558	4.41288405110385	4.16742193234514	4.54548923382054	4.30216497624331	-0.172084765984651	0.706401699634069	0.922959194348248
Merged-chr5-138229739-4	chr5	138229229	138230229	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001013773, exon 2 of 6)	5' UTR (NM_001013773, exon 2 of 6)	3825.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	5.20883966220378	5.32140250450116	5.45981859979539	4.77286385788644	4.83074314156783	4.67471544817324	-1.1958850405572	0.00166803661680464	0.0268408413867879
Merged-chr7-67380863-4	chr7	67380362	67381362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8004.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.57891511816405	5.62608558563423	5.17927196137845	5.26995211326234	5.21976377642531	5.13781885026307	-0.543703275364353	0.129283569251868	0.4809508307019
Merged-chr1-190881572-1	chr1	190881072	190882072	+	566.0	f1_balb.idr	intron (NM_178775, intron 5 of 14)	intron (NM_178775, intron 5 of 14)	30198.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.34303288062989	2.30153799864833	2.41573592820432	2.1398387852909	1.99622432670517	2.36386007182008	-1.3236916547944	0.159754773474893	1
Merged-chr4-154012565-2	chr4	154012065	154013065	+	754.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_201226, intron 1 of 6)	intron (NM_201226, intron 1 of 6)	762.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	6.02692161101228	6.39456083651199	6.63910156264563	6.64383547415456	6.33498929477202	6.35169118670193	0.135038617306168	0.663778317631054	0.907336430540351
Merged-chr18-23900252-4	chr18	23899745	23900745	+	839.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-54443.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	2.8016099158344	2.72361740203343	2.88953605409853	2.69978207961353	2.52318701646178	2.84423721525024	-0.614559429067144	0.415119177089547	0.786136540436176
Merged-chr19-4878621-4	chr19	4878135	4879135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013456)	promoter-TSS (NM_013456)	-33.0	NM_027476	70605.0	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding	6.20816991654354	6.49786432230485	6.30224017877042	6.37025996975889	6.22583176847617	6.10812273331485	-0.16883366219799	0.555473744501773	0.863239342468185
Merged-chr8-8134893-2	chr8	8134393	8135393	+	804.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	525880.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.86559740370115	3.23018563510838	2.86398238169691	3.06885601486072	3.15312882154758	3.40419572425106	0.89945776491337	0.210590818584883	0.602769092283296
Merged-chr5-122265245-2	chr5	122264745	122265745	+	889.6875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-785.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	4.84388941450777	4.62455245607849	4.85771896924663	4.82171030007727	4.84696796624501	5.02694072359996	0.271942237220908	0.490294113820212	0.830042606694236
Merged-chr18-57593928-3	chr18	57593432	57594432	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 4 of 6)	intron (NM_029290, intron 4 of 6)	-41535.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	3.41217885795765	3.37702768008905	3.52543062705133	3.46138671685943	3.09342020709368	3.543588208705	-0.242524427343523	0.699387702474618	0.920612088455034
Merged-chr1-10267020-3	chr1	10266532	10267532	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-34362.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	3.43301729959469	3.62341631515276	3.55231218370358	3.85145885561221	3.39461095465092	4.0599216249543	0.84586663943145	0.163309249924258	0.537121469927572
Merged-chr7-3946322-4	chr7	3945816	3946816	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30815.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	3.49534929477792	3.34904507792531	3.723216788972	3.20387215408581	2.98821311705747	3.64935944007833	-0.844936144602934	0.217649809963824	0.611645289860174
Merged-chr13-23446209-4	chr13	23445732	23446732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15215.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	6.02744724241939	6.29500717391937	6.12508860592971	6.24250549151257	6.40816840983665	6.14182602268636	0.203184714503827	0.483778972856023	0.826542662999548
Merged-chr11-40693677-4	chr11	40693212	40694212	+	860.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	-1030.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	6.44262099343476	6.76710116572802	6.48958223311848	6.77098641110188	6.90377086221586	6.76797539392383	0.375384928037459	0.15962759472235	0.531877190382303
Merged-chr17-35137478-2	chr17	35136978	35137978	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	B1_Mm|SINE|Alu	1764.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	3.12027516352822	3.03688899288438	3.39503952886351	3.28611312488844	2.79207841320702	3.36085629966887	-0.0864827613861745	0.904799772325344	0.978165789675139
Merged-chr10-75231544-2	chr10	75231044	75232044	+	865.5750119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 2 of 15)	intron (NM_153406, intron 2 of 15)	19154.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	2.88578854936464	3.06231178616086	2.98086627553835	3.05346481422164	3.0468116341602	3.43962587837574	0.910813604856952	0.184864321085577	0.568860672742926
Merged-chr6-129088752-4	chr6	129088247	129089247	+	977.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	12156.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	4.52996680787282	4.43888373702263	4.87504339738969	4.32510396574188	4.47636370848895	4.53510757271934	-0.419381641606505	0.345465473759596	0.733864976782959
Merged-chr18-53247157-4	chr18	53246652	53247652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	1490.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.23746822703367	7.85249357874737	7.93599975873646	8.05348782752432	8.23853752162543	7.92105695012541	0.0859565713723189	0.718239497286693	0.927293456311605
Merged-chr12-87375865-3	chr12	87375371	87376371	+	843.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	B3|SINE|B2	12484.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	4.01050925074148	3.84782323440322	3.88646033248452	4.00725347524984	3.7605200000773	3.8013133436028	-0.181954138047235	0.725161075182973	0.929553899800111
Merged-chr11-59515065-3	chr11	59514567	59515567	+	727.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8427.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	3.32637089077737	3.39456431659349	3.56292758108147	3.23982767379725	3.03763919748964	3.37182630832942	-0.858374504957117	0.176254464855782	0.556471161767709
Merged-chr9-103364389-2	chr9	103363866	103364866	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 1 of 4)	RSINE1|SINE|B4	613.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	6.4592918778475	6.73816906900844	6.14859247204398	6.58063900018059	6.67031782147699	6.51589349516281	0.174357977188908	0.553466674690378	0.862251545920931
Merged-chr8-115638406-3	chr8	115637910	115638910	+	938.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68484.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.77248782645731	3.69426999515027	3.54789277638549	3.28312912759435	3.19170922878905	3.510173127127	-1.3465143995475	0.0262825335721721	0.192493359164976
Merged-chr10-80618362-3	chr10	80617845	80618845	+	896.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4435.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	3.84681612411142	3.72871593430315	3.85638469364118	3.84879683513535	3.81174200251041	3.9732935820655	0.208051316662566	0.686226187764343	0.916610846457002
Merged-chr6-47953366-4	chr6	47952840	47953840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178898)	promoter-TSS (NM_178898)	-50.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	4.28012863090783	4.28308823374218	3.97133787989091	4.2118181107283	4.14311038515491	3.98971669720364	-0.202877903884933	0.678131343461911	0.913351670094672
Merged-chr5-122354347-4	chr5	122353902	122354902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144912)	promoter-TSS (NM_144912)	74.0	NR_152872	56433.0	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	7.26125745998566	7.12811884614485	7.05561613313396	7.18519018297867	7.02692837622267	6.85741155233273	-0.180707296604447	0.468076840495963	0.818329035469349
Merged-chr17-26237187-4	chr17	26236705	26237705	+	971.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	7037.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.8685189205441	7.75853164155968	7.60386494105182	7.81092950011654	8.20778275711249	7.24404803265374	0.108534339198952	0.718248927250352	0.927293456311605
Merged-chr7-45538720-5	chr7	45538110	45539110	+	974.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 8 of 19)	intron (NM_148927, intron 8 of 19)	12280.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	5.42859624347626	5.12003680407387	5.15837434101547	5.1794413298487	4.96188424117589	4.85474861729259	-0.493520894886546	0.192594454942313	0.579601410786647
Merged-chr5-135562974-1	chr5	135562474	135563474	+	870.0	f1_c57bl6.idr	intron (NM_001013412, intron 2 of 2)	MTD|LTR|ERVL-MaLR	595.0	NM_001013412	541307.0	Mm.376459	NM_001013412	ENSMUSG00000070464	Ccl26	Ccl26l	chemokine (C-C motif) ligand 26	protein-coding	3.48879004921219	3.13992611605106	3.19089342665996	3.10393700014522	3.15530372824179	3.4833514597908	-0.13396301758626	0.839219771912698	0.962725890398731
Merged-chr7-34378373-4	chr7	34377971	34378971	+	807.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	11234.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	4.0186887462827	3.94535792584237	4.3824147036132	4.27555532450542	4.14652751651539	4.14527792749934	0.205754144684543	0.675495648817816	0.912178940355624
Merged-chr13-14628056-1	chr13	14627556	14628556	+	546.0	f1_balb.idr	Intergenic	Intergenic	-2189.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	3.74752300550241	3.65270557502459	3.74718587594269	3.7096877574697	3.40201308933865	3.9129838651406	-0.112569040358556	0.844268987828105	0.96373428957366
Merged-chr5-92136902-3	chr5	92136390	92137390	+	926.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	835.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	3.78515665729046	3.69175892809879	3.52363511390452	3.80253666065757	3.70626539200191	3.59565864022018	0.0999216919449245	0.856849841331908	0.966628636076984
Merged-chr1-180763372-2	chr1	180762872	180763872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37329.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	4.56590521738144	4.35759833094416	4.55061031384521	4.70716434019189	4.57037670718037	4.80944036037461	0.486153648838338	0.249144212793933	0.646134245609601
Merged-chr9-106341481-4	chr9	106340983	106341983	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-27149.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.63869859947093	4.60655531739766	4.15965791693824	3.90961161971279	3.81519156518281	4.08252978091549	-1.67913237426034	0.000921374996520094	0.0168906379340213
Merged-chr11-115186527-3	chr11	115185988	115186988	+	893.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033393)	promoter-TSS (NM_001033393)	828.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	7.75272889594082	7.63631415773044	7.54718550684681	7.92070367145811	8.18750550248201	7.66278389914826	0.429516191099939	0.0814941370178016	0.377562811025812
Merged-chr15-73620875-4	chr15	73620369	73621369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3545.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	7.19490683926477	7.17707428486092	7.35868567184633	7.34805207965172	7.76395207409746	7.2446635063035	0.356724740608848	0.172333159262643	0.550866746903857
Merged-chr17-84860139-4	chr17	84859653	84860653	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR50|LTR|ERVL	-69367.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	4.72901715277468	4.64719965177477	4.51140387100651	4.70889741331655	4.49938986870873	4.49136133093998	-0.162559725281114	0.699191464411715	0.920527090870412
Merged-chr6-124732497-2	chr6	124731997	124732997	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 2 of 15)	intron (NM_001077705, intron 2 of 15)	657.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	6.43644086664316	6.486003509318	6.60239768105227	6.42287591265176	6.55705336538661	6.73937597037423	0.109954614037792	0.682408638506656	0.915072334923495
Merged-chr11-83737471-4	chr11	83736971	83737971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-9469.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	7.1604757853787	6.84317316285295	7.00642281089676	6.91085310008687	7.39317596718142	7.0375892003275	0.195928397765956	0.473220878174917	0.820796984658325
Merged-chr13-47265345-4	chr13	47264859	47265859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71356.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.65532668866906	5.80585998220707	6.01746891761195	5.46609245235992	5.42035998327355	5.06857035137394	-0.909523635477651	0.0098595179439508	0.0994774789717786
Merged-chr3-40531630-4	chr3	40531164	40532164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8752.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	5.29520148375835	5.10262972115987	5.06057738568128	5.4910849389144	5.49539351842093	5.0520346732735	0.42576610156632	0.251160727305179	0.648722079702291
Merged-chr1-90975149-4	chr1	90974672	90975672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5552.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	4.10176814992886	4.19583582710213	4.01275264879416	3.7977928076317	3.86560932741967	3.59598583009652	-1.0510701970272	0.047647004288013	0.276513157153593
Merged-chr6-29268661-3	chr6	29268169	29269169	+	946.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3819.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	4.93830913684701	4.81988732416219	4.87508571091706	4.79622724364116	4.56398617966988	4.49364517300767	-0.581019243879076	0.152952360778806	0.521519603975764
Merged-chr9-57629404-4	chr9	57628875	57629875	+	805.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 7 of 14)	intron (NM_001304761, intron 7 of 14)	-8601.0	NM_199222	235416.0	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	2.45887115797922	2.4268468606365	2.62648840551537	2.65233942939369	2.53611455279041	2.76047869482851	0.851525664818615	0.276263828658049	1
Merged-chr10-41573361-4	chr10	41572859	41573859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	5343.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.46121885466644	4.87590697417828	5.23107429711068	5.61684340930088	5.96120189629367	5.45726084597322	0.943504365076617	0.0144733789797593	0.129480799714849
Merged-chr19-6243581-2	chr19	6243081	6244081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1913.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	3.21651059651447	3.29429987332731	3.35424662163443	3.22980089521453	3.10031212729205	3.31539189013317	-0.311054636613521	0.617753024265332	0.888938738985019
Merged-chr8-35718569-3	chr8	35718089	35719089	+	728.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107970.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.24936388678519	2.34949909808039	2.45461412425781	2.82411881006159	2.52689819157221	2.7842127466639	2.34064699072355	0.00760549919430251	1
Merged-chr10-13982416-2	chr10	13981901	13982901	+	785.0	f0_balb.idr|f1_balb.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16022.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.92357750244561	7.21425978401206	6.93566183938491	7.44868301153114	7.6448774630938	7.32725902219933	0.669213577244692	0.00790390763161372	0.0853449709591636
Merged-chr5-21351864-4	chr5	21351360	21352360	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	MusHAL1|LINE|L1	-20813.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.0471657806562	3.87848740254623	3.75780110491997	4.05955155810065	3.91377900393135	4.38702590566596	0.646487827039161	0.220486691435709	0.615017427709933
Merged-chr4-155486857-2	chr4	155486357	155487357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4504.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	5.07365387409031	5.31559322859351	5.37655682887037	5.40570519604946	5.25318386444285	5.31837629857085	0.138004817019451	0.694902697820091	0.919230570201314
Merged-chr12-100615340-4	chr12	100614837	100615837	+	956.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-94515.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.06045003993874	2.82509907178845	3.20955093567501	3.11934561690052	2.80655388775395	2.99500039117317	-0.270320704288485	0.7033450516504	0.922108924938678
Merged-chr13-98845678-2	chr13	98845178	98846178	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 23 of 23)	intron (NM_178716, intron 23 of 23)	-30229.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	2.37181501074288	2.57012788556564	2.54973737289969	2.43007666927035	2.30214035822384	2.30008825871158	-0.999748473354248	0.23360430916983	1
Merged-chr11-74650918-2	chr11	74650418	74651418	+	905.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	1423.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	4.05270745192088	3.81310773445727	4.12126063363431	4.29608141152759	3.92016779902646	3.89527033181354	0.160596669326134	0.757572944285066	0.939883186830738
Merged-chr16-50613110-3	chr16	50612621	50613621	+	719.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-21967.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	2.96779310507796	3.04307276363224	2.92620832245323	3.06233103288548	3.18877124623915	3.34579006948097	0.964120318878355	0.149196546695401	0.51537803021029
Merged-chr7-101228142-1	chr7	101227642	101228642	+	1000.0	f1_balb.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	73946.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	5.07946464930427	5.3452227034196	4.88884098219037	5.0157971875084	4.84622261008196	4.9167073849674	-0.435328608278566	0.262548218941894	0.6605422006385
Merged-chr19-17218370-4	chr19	17217866	17218866	+	944.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	121139.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.31829180639235	4.85638405264862	4.67312572125592	5.26330526347585	5.47929345222594	5.36884150311221	0.780245965136677	0.0552035398168611	0.302016972916127
Merged-chr7-121059229-2	chr7	121058729	121059729	+	630.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	B4A|SINE|B4	15301.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	2.78680739723645	2.62014801904039	2.75166377316268	2.57588594413599	2.48377922956917	2.70253908008432	-0.766603564492223	0.317827595669714	1
Merged-chr7-110258490-3	chr7	110258013	110259013	+	770.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 3 of 11)	PB1D10|SINE|Alu	36810.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.95421914084475	4.46947010114157	4.22270987281732	4.22599617824514	4.14778369504088	4.19352692098852	-1.05145171592238	0.0331412479281124	0.222078216430533
Merged-chr9-13827061-4	chr9	13826563	13827563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-10.0	NR_037622	74360.0	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	7.45285357955757	7.8572329255789	7.5536110447826	7.35458164871778	7.77612579823342	7.58130483778978	-0.0737199322221447	0.775109475207556	0.944571019523584
Merged-chr8-71465412-2	chr8	71464912	71465912	+	804.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_053162, exon 2 of 2)	exon (NM_053162, exon 2 of 2)	486.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	5.45870285464736	4.95406467689514	5.24856713405036	5.63278687898513	5.73630308698971	5.37833291461644	0.700197313347389	0.057531592773881	0.309623489523905
Merged-chr19-9946203-1	chr19	9945703	9946703	+	773.5	f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-34397.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	2.91057294452787	2.95726366638949	2.91018992096133	2.67396016133206	2.51543911899097	2.67267401158973	-1.74308900926049	0.0236463610408847	0.180307077603267
Merged-chr4-154942845-4	chr4	154942355	154943355	+	858.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14778.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	6.64088433641191	6.75108779988182	6.58088595133	5.52460234273421	5.64462658080742	5.68101284275796	-1.78415764474369	7.20167911762468e-10	8.08687336058454e-08
Merged-chr14-56898411-2	chr14	56897911	56898911	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177627, intron 2 of 2)	RMER6A|LTR|ERVK	11568.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	2.89962438158371	2.9536574500869	3.08226823873507	3.1582420695353	2.8380493632828	3.37176216755974	0.69720721759916	0.322583364367578	0.715983797441848
Merged-chr2-91730330-7	chr2	91729835	91730835	+	997.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172669, exon 1 of 18)	5' UTR (NM_172669, exon 1 of 18)	197.0	NM_001080754	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	6.76051400722082	7.05746969510478	7.04621200818526	7.03143140864664	7.04586071364029	6.99859502623447	0.103097202114877	0.679929479669768	0.914057228279539
Merged-chr15-82048609-3	chr15	82048111	82049111	+	638.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1013.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	3.00974995752556	3.14384367883458	3.11045582629237	3.12819388508971	2.76177058259028	2.94266751763631	-0.641211491016811	0.360496007615151	0.746693015076209
Merged-chr5-115340804-1	chr5	115340304	115341304	+	1000.0	f1_balb.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	357.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	7.43572835284075	7.34448094387318	7.12824253937138	7.32827054740023	7.7424182507611	7.6221324069738	0.386385084126448	0.125477321517531	0.474078843870859
Merged-chr7-46710607-4	chr7	46710087	46711087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030233)	promoter-TSS (NM_030233)	64.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	3.73575881328603	4.0490990245072	3.98904390541856	3.73088770472443	3.72438274577676	3.76091861258243	-0.617599473907218	0.243719234617086	0.64086208327192
Merged-chr10-72655366-4	chr10	72654879	72655879	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293683, intron 1 of 7)	intron (NM_001293683, intron 1 of 7)	533.0	NM_001293683	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	6.4635036754818	6.55318858774161	6.3618060157246	6.26448431763054	6.38234065984061	5.72967602116465	-0.481324448425259	0.130033241699736	0.482195010397444
Merged-chr6-141050929-2	chr6	141050429	141051429	+	836.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198340.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	2.66804214366047	2.81283480018341	2.86366016300769	2.77944913380364	2.85013267016397	2.75243918498334	0.0815211152584034	0.910085626347057	0.979782437307844
Merged-chr6-115315974-3	chr6	115315485	115316485	+	695.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-44966.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	3.96752660137468	3.60220245450954	3.66652590465505	3.76720509668808	3.67696910221447	3.68342651721003	-0.165838753154453	0.764136694515	0.941958626520407
Merged-chr11-86758776-4	chr11	86758234	86759234	+	902.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1167.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	8.65337442540969	8.88921720416177	8.28440150741013	8.34769913812916	8.83897513681879	8.35876008824538	-0.132597821664527	0.620049028379104	0.890023686663772
Merged-chr3-100410212-2	chr3	100409712	100410712	+	728.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-16193.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	3.62264145058507	3.66239674527223	3.45279753959645	3.50802684061839	3.45323729345851	3.40917154044052	-0.470587258832623	0.414270461427216	0.785708801842536
Merged-chr8-4253136-4	chr8	4252613	4253613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	11.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	6.24426812294134	6.45285930701379	6.28361972983779	6.5472239937538	6.34589475006721	6.40205801975475	0.163154426421061	0.553390078426891	0.862251545920931
Merged-chr11-16999624-4	chr11	16999126	17000126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9092.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	5.63442239305395	5.04012907352261	5.53997739470364	5.33322353437663	5.30640859939229	5.17548387930716	-0.295300108262303	0.435517795487784	0.799103943349302
Merged-chr5-65198969-3	chr5	65198475	65199475	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-721.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	6.86733543542618	7.07706934306369	6.7434850053582	6.70706502819377	6.76458725257238	6.50910679397158	-0.370062952961255	0.163305459598916	0.537121469927572
Merged-chr2-164929242-4	chr2	164928733	164929733	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17483.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	2.90356055958733	2.82665403723582	3.00932890047585	3.0871944550248	2.80462229178816	3.13870675520014	0.475141276590358	0.497203026035062	0.833500500620649
Merged-chr11-94590276-1	chr11	94589776	94590776	+	562.5	f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	B1_Mus2|SINE|Alu	11510.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	7.04276578079503	6.92611966138609	6.8390440552684	7.17252780399876	7.43552266276876	7.00013518578435	0.427822955058802	0.0984548982141042	0.41841029007527
Merged-chr10-75222086-4	chr10	75221595	75222595	+	929.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001145826, exon 2 of 19)	5' UTR (NM_001145826, exon 2 of 19)	9705.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	8.4207046087091	8.59373730949226	8.08868646122593	8.57497963208517	8.87660754122453	8.4841568134015	0.374167774960078	0.127676234925451	0.477726601118668
Merged-chr19-40697765-3	chr19	40697265	40698265	+	768.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	37995.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.25318508448777	4.22080060542954	4.49356510250899	4.81753351752814	4.68120700495809	4.56089748778177	0.941662941220518	0.0300692047035968	0.209337214271828
Merged-chr1-159198791-4	chr1	159198326	159199326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-33374.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	3.84651597178189	3.91272928437702	3.72835680470327	3.70441983628979	3.66515775733443	3.57881542697695	-0.606470755363905	0.260196713610681	0.657649400461384
Merged-chr16-75855631-4	chr16	75855134	75856134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53632.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	7.2783970017164	6.87458738908309	6.80979562386061	7.03999749226382	7.17454301012272	6.77277194297131	0.00517309043891711	0.985292259580297	0.996873682039026
Merged-chr10-117793961-2	chr10	117793461	117794461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	2.99497576255996	3.07308140913829	3.00498457286064	2.77626987160945	3.00306241000185	2.89548092684605	-0.598707321941332	0.391047716609564	0.770112153342334
Merged-chr17-33089468-4	chr17	33088978	33089978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024950, exon 1 of 4)	exon (NM_001024950, exon 1 of 4)	111.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	6.03002917579134	6.43553483557218	6.32954972024564	6.53626190514997	6.41418126441933	6.35063335755156	0.265883307609947	0.357072748975075	0.743726917541594
Merged-chr4-124708701-4	chr4	124708206	124709206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010213)	TTS (NM_010213)	-6155.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	7.24607091609198	7.26117180721497	7.49207139422168	7.26274455482499	7.5696339703775	7.46972355975784	0.164482714477728	0.497644523194106	0.833770467452658
Merged-chr1-55505880-2	chr1	55505380	55506380	+	718.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99934.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.72101932833923	6.60592134661865	6.77725941851951	6.37124584182689	6.43021075616075	6.68441029285726	-0.328249892151524	0.219879561639047	0.61423936831415
Merged-chr2-142763807-2	chr2	142763307	142764307	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	HAL1b|LINE|L1	137657.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.52962572116479	4.79959240345349	4.54870872513294	4.14168342032643	4.18159307924552	4.57496983084873	-0.849592181477526	0.0650416930635248	0.332595206270266
Merged-chr17-48409045-4	chr17	48408554	48409554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357903)	promoter-TSS (NM_001357903)	766.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	7.99225976235684	8.53097968485312	8.07242252202954	8.02465696073849	8.2645343723374	8.28679347084699	-0.0415470148973187	0.86887550109751	0.969751275858173
Merged-chr12-73876546-4	chr12	73876033	73877033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24791.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.85717321309405	4.79258477445615	4.73583708627768	5.23506054448355	5.11477862936636	5.03223306242811	0.721101782161998	0.0551036629893192	0.30162920794785
Merged-chr12-11264827-2	chr12	11264327	11265327	+	928.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177331, intron 1 of 13)	intron (NM_177331, intron 1 of 13)	960.0	NM_177331	209334.0	Mm.215295	NM_177331	ENSMUSG00000051235	Gen1	5830483C08Rik	GEN1, Holliday junction 5' flap endonuclease	protein-coding	3.12424825852643	3.09727198216421	3.11216924028532	2.92746131167062	3.14509269581902	3.12583737782381	-0.176484927574579	0.788599021266442	0.94895503373255
Merged-chr3-145670942-4	chr3	145670439	145671439	+	869.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-20954.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	3.92822662776105	3.63709084505581	4.33157870488546	3.92466799697482	3.85303272394088	4.39715500028151	0.243425559984582	0.672143799177795	0.910735325716773
Merged-chr4-63392510-2	chr4	63392010	63393010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 3 of 21)	intron (NM_001045514, intron 3 of 21)	5730.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.38198767825689	3.69367437998773	4.18310703844442	3.77678615391741	3.26839722880542	3.81373462020876	-0.482565400494905	0.464212437158887	0.816235256119365
Merged-chr5-140731246-4	chr5	140730730	140731730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	7103.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.7819406532825	5.42859599205777	5.44311904298821	5.19454532771678	5.2422360577295	5.07536013387682	-0.761216243480233	0.0323510641012394	0.218637698321632
Merged-chr1-64929243-4	chr1	64928742	64929742	+	962.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	RMER1B|Other|Other	27582.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.90525596142397	4.75564550857733	5.15265214844111	4.63045358113123	5.01479746409448	4.88040770059429	-0.178443953737708	0.663552311459378	0.907270618047719
Merged-chr14-21299947-4	chr14	21299447	21300447	+	892.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-199823.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	3.75470705776556	3.54171373061425	3.79622767613713	3.37650982890264	3.31642757018971	3.61683951971664	-0.959850819579794	0.102014768652852	0.425957014519798
Merged-chr7-134557284-2	chr7	134556784	134557784	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-113403.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	2.93326445965232	3.08741537146942	3.10641492552473	2.84969783369613	2.52028021088848	2.75758264563202	-1.75311541728666	0.024884214594797	0.186487051067628
Merged-chr11-116108931-4	chr11	116108375	116109375	+	800.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205081, intron 1 of 5)	intron (NM_001205081, intron 1 of 5)	1360.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	5.34937296844956	4.93665468952667	5.27546951292617	5.00799663989598	4.6086768593669	4.82646999441961	-0.812750062195091	0.0447287927962773	0.266670545555602
Merged-chr12-84217649-4	chr12	84217155	84218155	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1226.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	6.65698469947751	6.46174485920753	6.41197104470565	6.29072880218327	6.53690649442907	6.37605482522699	-0.174682316491419	0.526099958772768	0.849279136234443
Merged-chr2-58920768-4	chr2	58920291	58921291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	165607.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	8.34211891350165	8.32660329186132	7.94173784538122	8.18520036602066	8.52727804647324	7.7733466007787	-0.0177768233245546	0.948904151111792	0.988169196639905
Merged-chr17-5440547-8	chr17	5440059	5441059	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027457)	promoter-TSS (NM_027457)	-299.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	7.35601198134775	7.38139371547643	7.02330364405563	7.46306851282655	7.64467502983527	7.34637731834712	0.330570512525976	0.18634033750718	0.570809808295781
Merged-chr17-73038682-4	chr17	73038168	73039168	+	960.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-69317.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	5.63939694274846	5.74792577236537	5.28651338591196	6.01222916273876	5.77080925918844	5.54810113561424	0.38575420521375	0.270275726565247	0.667262939156975
Merged-chr12-100004794-4	chr12	100004300	100005300	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MTE2a|LTR|ERVL-MaLR	40301.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.46450735705663	6.63895856455858	6.20970819527122	6.40027570128052	6.57991677009315	6.41320062185585	0.0179617691004446	0.949549987287167	0.988236286738052
Merged-chr14-47541883-4	chr14	47541383	47542383	+	930.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26551.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	5.43796280022728	5.47765448622279	5.51546782751818	6.28801469119947	6.38828572767941	6.0510021806961	1.39189035271575	5.44525585334625e-06	0.000238091880738431
Merged-chr19-26604181-3	chr19	26603677	26604677	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-983.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	5.31960237416465	4.65110756327579	5.20786024332476	5.09513802675995	4.9850622242359	4.96783400844533	-0.151687714631483	0.715319273514882	0.926385776040876
Merged-chr11-51636617-3	chr11	51636177	51637177	+	845.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	-781.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	5.78073539017353	5.88371579172166	5.19617912719172	5.82046393205532	5.95516065138553	5.18670875557915	0.0773904025908623	0.850854751108767	0.964981271430729
Merged-chr9-45828663-4	chr9	45828155	45829155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-17.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	4.58752060922982	4.51584299664344	4.84908923782812	4.88933303271717	4.53956495444228	4.84235372248795	0.257867731678354	0.543283066291008	0.857550240744675
Merged-chr14-26639422-4	chr14	26638935	26639935	+	902.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1301.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	7.44534601360525	7.78447979730363	7.16938691034185	7.55628188338747	8.00049583414359	7.56857059766978	0.3361909505577	0.232794310625079	0.629066394953106
Merged-chr16-92674219-2	chr16	92673719	92674719	+	824.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	23110.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.78485636770399	3.64047821020547	3.80118820352332	3.28118828919264	2.95740775497635	3.57153195744797	-1.75891643416604	0.0101774357231689	0.101625353612558
Merged-chr4-102606643-2	chr4	102606143	102607143	+	593.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16800.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.43968908160618	5.26434730217146	5.55383271388851	4.55082513441249	4.26531102885358	4.55303171089852	-2.19370644504614	8.7016294466285e-08	6.31251249341817e-06
Merged-chr13-93244425-2	chr13	93243925	93244925	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-52008.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	2.21611526159897	2.18373637068603	2.12741128658424	2.36412965739041	2.11540991306359	2.40285670535983	0.819042410211815	0.356427706250549	1
Merged-chr9-70830334-4	chr9	70829849	70830849	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	104459.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.30724644778485	5.04993022616913	5.07061452278867	5.29118807012173	5.09414669038495	5.02770044788983	-0.0144571190254825	0.968738750552312	0.992853707563486
Merged-chr18-38354341-6	chr18	38353827	38354827	+	940.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15334.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	5.35255585869816	5.40526983223351	5.65306271512275	5.43183378811295	5.38145314362683	5.52864102001939	-0.0450003498683002	0.893768455375961	0.975280227461205
Merged-chr7-109631373-4	chr7	109630888	109631888	+	862.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14241.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	3.9609370772715	4.20560641887017	3.98274436011438	4.0020147849183	3.8223802330264	4.14599427528655	-0.211245613452418	0.676753727403828	0.912549881054299
Merged-chr12-99965798-4	chr12	99965324	99966324	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146037, exon 2 of 3)	5' UTR (NM_146037, exon 2 of 3)	1325.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.6626283070209	8.01099396304348	7.76570067237456	7.60475043567626	7.96505545030881	7.67088615263912	-0.0881043413430838	0.719794229513624	0.927960661644538
Merged-chr4-129051412-4	chr4	129050916	129051916	+	948.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6855.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	4.04910834971125	4.03090207445426	3.90058327652982	4.10052279531345	3.65876903984595	4.11521244371698	-0.0943093892280592	0.85897629572333	0.967102355923779
Merged-chr8-123044170-4	chr8	123043656	123044656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	1581.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	6.7300347290207	6.84869998043872	6.46396771742311	6.10946329454386	6.58624954469773	6.48691712370768	-0.454196110687948	0.125198366208248	0.473522984338903
Merged-chr6-114894667-4	chr6	114894158	114895158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27163.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	8.24243967550174	8.44890885519521	8.0216750023632	8.22344890510833	8.39809573472273	7.83293772741331	-0.103239056826493	0.687521891869112	0.917163788391121
Merged-chr2-125248269-2	chr2	125247769	125248769	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023595, intron 1 of 5)	intron (NM_023595, intron 1 of 5)	754.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	2.18231120152665	2.36547971007345	2.38968325148469	2.22625539095001	2.12100801119358	2.13736301925659	-1.10231896987614	0.21662062753883	1
Merged-chr4-59459493-4	chr4	59459011	59460011	+	937.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-20878.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.73713061417286	3.81818408558414	3.87868085917538	4.11882630499382	3.85022369473366	3.84649371904656	0.424670837400327	0.412823941989668	0.78466442572758
Merged-chr2-132248640-2	chr2	132248140	132249140	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	-852.0	NM_001141971	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	6.09229265212552	5.99100394867226	6.12211457599803	5.86796292882014	6.23081841808445	6.3212176117433	0.14594024672977	0.629809806760199	0.894377678440432
Merged-chr3-109031661-3	chr3	109031142	109032142	+	979.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4035.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.80915225099409	4.65997470301896	5.08381811061752	4.7334380984497	4.57545495151493	4.76989723076952	-0.37368375577336	0.365735251745431	0.750755886042233
Merged-chr4-129585242-6	chr4	129584710	129585710	+	893.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6630.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	3.96418332051581	3.95138885720423	4.10105900306065	4.63435891239066	4.75605093824865	4.65444065909744	1.8373000728396	5.36102972716584e-05	0.00167636438007522
Merged-chr8-76897146-4	chr8	76896645	76897645	+	974.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	3476.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	3.5532233983807	3.82233926329349	3.51352179589984	3.65712289646582	3.31844060027499	3.28799174737134	-0.749304541357694	0.222975361735108	0.617835308211147
Merged-chr1-165766058-4	chr1	165765537	165766537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2279.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	9.0002997238173	9.1504377603731	8.60819447255125	8.81004035269455	9.29251806991243	8.64740550747158	0.0132142429468341	0.960841792008474	0.990386809359123
Merged-chr1-65090586-4	chr1	65090156	65091156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31B|LTR|ERV1	-8366.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	4.05865146237824	4.24701802549243	4.18463188793106	4.19879672192047	4.33955179805203	4.00891484616446	0.0959502590044536	0.842064396870719	0.963002495523594
Merged-chr2-122117514-2	chr2	122117014	122118014	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145531, intron 1 of 39)	intron (NM_145531, intron 1 of 39)	872.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	5.8149795612604	6.21037983157849	5.87954502769644	6.03983235378361	6.2200519463694	5.66970891083344	0.0417289469630836	0.900951834750027	0.977039928959315
Merged-chr5-64676432-4	chr5	64675928	64676928	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65729.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	6.82698332134121	6.63294533038181	6.83194507220947	6.93752655880189	6.85591289861869	6.80073769728924	0.162017301322971	0.519509801168352	0.845839622469233
Merged-chr13-98831800-2	chr13	98831300	98832300	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16351.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.13155531425159	5.20594177718382	5.10970924098721	4.95984159835336	5.247726836183	4.88068218539993	-0.204415797145494	0.587906064914058	0.876157251972291
Merged-chr18-4910964-2	chr18	4910464	4911464	+	918.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98478.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	2.73844559781785	2.9077042144467	2.96548409910212	2.72369782601539	2.65208720595559	3.03711343940338	-0.318375841978015	0.667577099994292	0.90879890451381
Merged-chr10-43856529-4	chr10	43856037	43857037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	30630.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	4.62207877624623	5.09974695342474	4.846628822656	4.84589377020409	5.0309912556185	4.83598837012555	0.0832948855562213	0.838900909852063	0.962619500530269
Merged-chr11-86627830-2	chr11	86627330	86628330	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356531, intron 7 of 11)	B2_Mm2|SINE|B2	43445.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	3.64383255945496	3.36079038957049	3.39979067273224	3.53117265145426	3.59954812255717	3.16334735830039	-0.0895164400361127	0.888845048930447	0.974196090932383
Merged-chr3-87407282-1	chr3	87406782	87407782	+	788.0	f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-28500.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	2.28404115123262	2.4244409027834	2.20547727971921	2.46872770280438	2.34664458588438	2.73151926639917	1.30917271747808	0.139049993107764	1
Merged-chr13-81783774-4	chr13	81783289	81784289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 1 of 4)	CpG	542.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	8.55822055961859	8.75550295081537	8.37130092398745	8.51519669772134	8.80507193284382	8.48382475997301	0.0535224095245004	0.815775106248465	0.956487086386988
Merged-chr9-60794429-3	chr9	60793907	60794907	+	973.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028283)	promoter-TSS (NM_028283)	-35.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	3.37333549557032	3.49571863166531	3.17817109360545	2.93850352995491	2.9033253723775	3.13168572411415	-1.68636079882591	0.0138529724134104	0.125865705238595
Merged-chr15-3251157-3	chr15	3250667	3251667	+	761.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19600.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	4.95977809340264	5.26401684658214	4.87820603235	4.61854250264423	4.49166037660312	5.01438796547753	-0.75603293501004	0.0750642885875635	0.36076643705851
Merged-chr2-5035224-4	chr2	5034743	5035743	+	846.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-22452.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	6.95111023312111	6.79859595832599	6.65805489604818	7.45316466277625	7.83129370462048	7.32203903579013	1.12029557132481	3.08911206166302e-05	0.00105473465911718
Merged-chr7-89441320-3	chr7	89440813	89441813	+	911.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15007.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	2.44067012550694	2.47209623460566	2.62922953418844	2.35030847880227	2.45368763023482	2.70187666021811	-0.0449005065641989	0.955843172101511	1
Merged-chr13-60627629-1	chr13	60627129	60628129	+	774.0	f0_c57.idr	intron (NM_134062, intron 2 of 26)	B4A|SINE|B4	25418.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.16310606045809	6.9899461598282	7.0867555165936	7.08926114609859	7.27026310295373	6.80164868671533	-0.00189606275738525	0.994193049227721	0.998918571480046
Merged-chr16-43398034-4	chr16	43397527	43398527	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	22169.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	5.72935788457388	5.91676280856079	5.50939308767429	5.62788555304689	5.94162835941517	5.57315189571907	-0.00481581446893055	0.988652894620241	0.997426973334006
Merged-chr9-84545571-4	chr9	84545051	84546051	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228847.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	4.57952682599543	4.65351600916077	4.4797235013901	6.34243541718224	5.91175706245417	5.41477905417059	2.7787260971878	9.3685327307772e-11	1.25934874226577e-08
Merged-chr19-40637352-2	chr19	40636852	40637852	+	846.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-22418.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.01159242944951	7.04125116389351	7.08697759783984	6.6123008260086	6.64820805126277	6.60687407472933	-0.653277937899045	0.00762475602487244	0.0831290224472728
Merged-chr14-20640962-4	chr14	20640462	20641462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15578.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	8.0531723254675	7.9820361683999	7.73317429220957	7.72209883136158	7.93261790580254	7.76294109402711	-0.176123867643886	0.441636651322369	0.802789517411278
Merged-chr3-90451591-2	chr3	90451091	90452091	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008727, intron 20 of 21)	B3A|SINE|B2	14275.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	4.18011720826951	4.27770634803701	4.16640665905352	4.00889455758557	3.86078928742523	3.9954896223255	-0.759688118300972	0.116256074936876	0.455199072201195
Merged-chr7-25284523-2	chr7	25284023	25285023	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	2344.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	3.29727416984005	3.28878893271639	3.29401096894949	3.2649137935735	3.07045158032316	3.25192998840839	-0.415586681525483	0.505796263972817	0.838177729332582
Merged-chr18-56699197-4	chr18	56698697	56699697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8616.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.53864833900996	4.65352162862124	4.6073544848053	5.16555470022011	5.23097376426587	5.19220106561365	1.32165215604115	0.00054532447297255	0.0112370873568846
Merged-chr16-11456485-4	chr16	11455971	11456971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50823.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	8.62309494866365	8.76989507964972	8.55802096980576	8.38588628670415	8.78231750793811	8.28964421498656	-0.198395634077242	0.400185028579975	0.776372018141352
Merged-chr17-34289337-1	chr17	34288837	34289837	+	562.0	f1_balb.idr	Intergenic	Intergenic	-1566.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.68079801882908	2.44927530489988	2.54842139536159	3.12871128311129	2.89968083792417	3.18543642425819	2.87666237403074	0.000832906578004727	0.0156196733249081
Merged-chr16-38348046-2	chr16	38347546	38348546	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1047.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	4.57614271465673	4.70660293379505	4.63515465849205	5.06776701429472	5.17503593469226	4.61626888673938	0.781825979692211	0.0617115341019175	0.32232084172697
Merged-chr6-87002901-4	chr6	87002370	87003370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-6966.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	4.13000344456612	3.81420081081234	3.87471166582536	3.77387058147385	3.37537108649373	3.44723364229565	-1.36592742826272	0.0201491209921832	0.162300877010414
Merged-chr8-72295875-4	chr8	72295368	72296368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23194.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	8.25872420902882	8.00128423115376	7.71727904358379	7.85662961933714	8.19826340479593	7.86134267652022	-0.0429961323198911	0.866602830489126	0.969114221403526
Merged-chr5-123573005-4	chr5	123572464	123573464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029929)	promoter-TSS (NM_029929)	51.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	7.23876696375284	7.7557103523958	7.0371179131324	7.44498089142345	7.77133412789709	7.20303659394379	0.163705885814487	0.59099316396272	0.877301111216348
Merged-chr2-31024851-4	chr2	31024337	31025337	+	687.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42558.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	2.9837830575137	3.08994743711324	3.35500224348702	3.3585390220947	2.75929457294564	3.14923011231939	-0.150631189876163	0.837617829529318	0.962141375366527
Merged-chr6-48593838-4	chr6	48593341	48594341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079901)	promoter-TSS (NM_001079901)	-42.0	NM_001079905	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	6.13555835534514	6.24319838860187	5.76199145463607	6.16758458233477	6.11878569234908	5.90480458767507	-0.00244840317856885	0.993760803602213	0.998777772262979
Merged-chr11-114568928-6	chr11	114568409	114569409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-99634.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	6.15695852677865	6.07469528369772	6.11704220445175	6.62371356571899	6.77743517219821	6.61868245534939	0.920342515942612	0.000590173204680921	0.0119890459021216
Merged-chr11-93941068-3	chr11	93940560	93941560	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134012, intron 15 of 15)	intron (NM_134012, intron 15 of 15)	14723.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	4.25321624129612	3.88675013710365	4.18299453841752	4.0098541025664	3.99041026080523	3.56868753617911	-0.700095972275806	0.21081243718693	0.603098348627511
Merged-chr17-34851414-1	chr17	34850914	34851914	+	732.0	f1_c57bl6.idr	intron (NM_138580, intron 2 of 10)	B1F|SINE|Alu	1023.0	NM_001045864	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	4.14510029756354	3.94639179668132	4.30223467590455	4.38520162144555	4.36378716500905	4.5337930305603	0.79730446770952	0.0876199609180654	0.392584228532141
Merged-chr10-121603705-3	chr10	121603214	121604214	+	872.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 17 of 24)	intron (NM_001359618, intron 17 of 24)	-16920.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	2.98466481866514	2.65942588665989	2.77561069134154	2.76581355785893	2.70438141477877	3.08422929508742	0.205319360111143	0.785248483790625	0.947850129107983
Merged-chr4-132959668-4	chr4	132959151	132960151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14444.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	8.00802034507424	7.99164780544083	7.80584909173422	7.90624388942898	8.07798585210792	7.64414334440203	-0.0641676928443139	0.785776605716318	0.948164689606319
Merged-chr8-111343370-4	chr8	111342863	111343863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5158.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	3.81594103418721	3.67430573581645	3.91231196776631	3.57853426879994	3.69617075773766	3.68276403147225	-0.483132158582882	0.372284326056575	0.75613031608614
Merged-chr3-52105041-4	chr3	52104538	52105538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004176)	promoter-TSS (NM_001004176)	-32.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.1908558371322	6.15005385359567	6.46678204757343	6.3138363704719	5.83524802776747	6.08083600547018	-0.307152110676095	0.324256294166443	0.717324268869843
Merged-chr5-31198653-4	chr5	31198074	31199074	+	888.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175311)	TTS (NM_175311)	3468.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	5.15682952286526	5.34961906611652	5.50006328183874	5.43694682955858	5.60528483397928	5.76873618302715	0.520501853080252	0.13092879479211	0.483590339003102
Merged-chr18-39483800-2	chr18	39483300	39484300	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	3445.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.35602664402913	4.71944617918073	4.45840639930486	4.60970108806122	4.51309511670772	4.43783358407605	-0.0047135740093888	0.991433009531894	0.998259391535835
Merged-chr5-146247863-4	chr5	146247336	146248336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153599, intron 1 of 12)	L1MB8|LINE|L1	16586.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	6.52933873400102	6.59275827662051	6.51361187641583	6.45350180031903	6.63613564746283	6.44564146682008	-0.0411429598413312	0.875916272345959	0.971136321106511
Merged-chr16-94524795-2	chr16	94524295	94525295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	1834.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	5.37152912042876	5.19359264453473	5.36592121964335	5.36628222808142	5.22627484473877	5.42882472231847	0.0524247296309066	0.879247195969979	0.972083703102674
Merged-chr10-41517990-4	chr10	41517484	41518484	+	897.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-1516.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	3.92304340586886	3.86950330785053	3.46397475590126	4.01540102024409	4.12477463225915	3.72179721070091	0.602411955501208	0.302241162674131	0.698958713820873
Merged-chr1-45925565-4	chr1	45925071	45926071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	23.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.90031130629161	7.11310108851356	7.1749727492174	6.96518062312749	7.2657678403423	6.65908448392594	-0.0969862800730995	0.730485784392328	0.930884711548651
Merged-chr1-35813846-4	chr1	35813358	35814358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-254542.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	3.52336726333124	3.57916295860668	3.5099272532279	3.68584213950905	3.47608011019806	3.34966314124227	-0.0883480844802425	0.879527677546412	0.972153812344339
Merged-chr9-111049274-4	chr9	111048757	111049757	+	947.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7987.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	3.91812833147854	3.99163423346475	3.85814891056239	3.79003327742088	3.91321420889682	4.02487249545383	-0.0557174657947158	0.912613700876142	0.9803740348902
Merged-chr16-57338257-1	chr16	57337757	57338757	+	692.0	f0_balb.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-15020.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.42494448678159	5.37377332152134	5.38108884402267	5.39693509651631	5.56193407569249	5.6684323288991	0.286654624854709	0.386987676453087	0.767390447851778
Merged-chr4-119173398-2	chr4	119172898	119173898	+	948.1875	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_183140, exon 1 of 2)	5' UTR (NM_183140, exon 1 of 2)	458.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	4.40698268663125	4.61089834550275	4.29310805499121	5.48083412092575	5.34299403255818	5.25706747660906	2.01284154235712	1.19515023628919e-06	6.33818106189619e-05
Merged-chr7-143549185-4	chr7	143548670	143549670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008672)	promoter-TSS (NM_008672)	-50.0	NM_008672	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	8.33108709688503	8.4939643805929	8.32242591555131	8.44420523472183	8.39571832133554	8.0549701424891	-0.0993698518857055	0.658520115654467	0.905014667687917
Merged-chr3-27234683-4	chr3	27234185	27235185	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	51681.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.37864839221146	5.55197927031423	5.37476139984644	5.51512539050252	5.57386716649714	5.69152759398949	0.282969906468407	0.389206123877879	0.769015431167891
Merged-chr10-80598197-4	chr10	80597712	80598712	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-4668.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	6.92216736505299	6.52971878445034	6.70939826629078	6.84136293107831	7.53472673234389	7.09853831797153	0.714394382276108	0.0177871675523864	0.14945367057597
Merged-chr3-14869968-4	chr3	14869466	14870466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007606, intron 5 of 6)	intron (NM_007606, intron 5 of 6)	6428.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	6.06344197628733	5.93350671265608	5.61585309045533	5.65452434791849	5.51480936390812	5.40274743952497	-0.662454539408007	0.0459774586316875	0.271018162214895
Merged-chr19-10944138-4	chr19	10943652	10944652	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023731, intron 2 of 3)	MIR|SINE|MIR	5114.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	3.25189537844251	3.20606692767713	3.51956793281346	3.73304348174153	3.84647586373224	3.64494497560799	1.58369253684913	0.0078394828854009	0.0848460403589662
Merged-chr10-26762703-4	chr10	26762199	26763199	+	972.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9813.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.85290882934898	4.69059627775224	4.73496687293864	3.93636548939692	3.99555580515092	4.21489458825433	-1.91560609341124	3.57715548625613e-05	0.00119202224149139
Merged-chr16-55821106-4	chr16	55820590	55821590	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1048.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	8.3032898724631	8.71710822613196	7.99005342053504	8.20759544161971	8.52870036066279	8.05204377925031	-0.134914178313825	0.628108141367959	0.893508518159715
Merged-chr3-28146147-4	chr3	28145683	28146683	+	894.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-117031.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	3.23481827110115	3.09593168828479	3.1401366447749	3.04468044732158	2.95385663219577	3.26795604406278	-0.311986536991591	0.636471666126309	0.897160081657505
Merged-chr13-81784333-2	chr13	81783833	81784833	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 1 of 4)	intron (NM_007684, intron 1 of 4)	1086.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	6.56525705385778	7.06082821179361	6.52129991386267	6.8163804650803	7.14723417249047	6.78580370567932	0.285000073397563	0.339144081588148	0.729057813336113
Merged-chr5-76179021-3	chr5	76178432	76179432	+	759.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4948.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	3.8005909430532	3.79180334073672	3.84989736024347	3.78519081388557	3.38337760104761	3.60834155479891	-0.728242957502568	0.197043130067284	0.584870414852249
Merged-chr13-64371129-2	chr13	64370629	64371629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009984)	promoter-TSS (NM_009984)	-609.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	6.18743888441312	6.23542453026013	6.42479737211441	6.51410469899811	6.80596389961972	6.22588561893608	0.441773972770084	0.140852160172855	0.501450363202116
Merged-chr10-78138069-2	chr10	78137569	78138569	+	654.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31699.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	3.25722977793113	3.08863500601152	3.38732830601566	3.25229799933063	3.20340975480323	3.17851156745971	-0.131862344002288	0.834969103201824	0.961434055314855
Merged-chr4-133692354-2	chr4	133691867	133692867	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 10 of 19)	intron (NM_001080819, intron 10 of 19)	-19201.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.28511803210853	3.14385036638562	3.37396948966456	3.3007900909825	3.5805295821071	3.38966756586737	0.660207661721827	0.284503883830584	0.682238657188254
Merged-chr1-165645885-2	chr1	165645385	165646385	+	954.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11344.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.53870216842531	3.14089513709762	3.41173660555405	3.33535524484015	3.24733602919841	3.68699935373215	0.21165312457909	0.741694477624738	0.934932799487944
Merged-chr14-120327289-4	chr14	120326783	120327783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	20831.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.67552102028043	6.21562827856755	6.27711451893801	6.93832830651428	6.96117744277036	6.6068613914012	0.69586935371111	0.0178798808256117	0.150050340266011
Merged-chr10-63024003-4	chr10	63023511	63024511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	-162.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	7.53945681900978	7.78779104139646	7.65938418784522	7.76525592415687	7.70312213345215	7.53366208900052	0.0112517619060057	0.960788687302843	0.990386809359123
Merged-chr17-70991994-3	chr17	70991435	70992435	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1419.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.05919276715238	5.95612381475997	6.26694602837799	5.74894730876868	5.48737085376734	5.93576009814384	-0.655121771856888	0.0420922637151085	0.256921934210352
Merged-chr16-11005356-2	chr16	11004856	11005856	+	641.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-3542.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	6.42640111972683	6.12750983752118	6.52404963374973	6.28665845082694	6.14246827862365	6.58294806754877	-0.0394502691455817	0.896261147919284	0.975793389723097
Merged-chr2-167714411-2	chr2	167713911	167714911	+	963.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23234.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.34885434748014	4.05546888000238	4.07274456053684	4.04125400299742	4.06790070181741	3.88619312810428	-0.470332992336331	0.344696629006952	0.733279141917758
Merged-chr2-150834785-2	chr2	150834285	150835285	+	855.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 11 of 12)	intron (NR_151505, intron 11 of 12)	7785.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.07304982896653	3.17898104737147	3.55129376794617	3.30250751095977	2.90946608192708	3.41940545272112	-0.217126235877237	0.75615646069448	0.93952733815354
Merged-chr3-96727597-4	chr3	96727107	96728107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	-4.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	7.80251264975624	8.12468040740402	7.72421383271375	7.92376431829135	8.01440484761083	7.91469717334787	0.0729716984318251	0.753852852093007	0.938570691167124
Merged-chr10-69252952-4	chr10	69252452	69253452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39758.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.879822244922	6.7101937833935	6.83516109838808	6.74078601278057	7.14793997261857	7.08345454544374	0.30193918714796	0.252192596214397	0.64970951645701
Merged-chr19-17130628-3	chr19	17130148	17131148	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174530.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	4.64479852169077	4.48077760296081	4.70982317282909	4.59759755136625	4.59581062430556	4.2043294487374	-0.295124249388571	0.509340951625752	0.84026772146894
Merged-chr14-27357351-2	chr14	27356851	27357851	+	787.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-4038.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.26547137116174	5.58415818891405	5.47828839749409	5.45494995614801	5.21619283637078	5.56848366728589	-0.0756362114802551	0.829869998749989	0.960134151531511
Merged-chr6-83673635-4	chr6	83673148	83674148	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144943, intron 4 of 5)	MLT1I|LTR|ERVL-MaLR	4209.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	2.87340496706985	2.90130155687714	3.41813362302569	3.28850300367602	2.81719018755864	3.11103420834545	0.00562997276364745	0.993956675261724	0.998866496397029
Merged-chr15-64241747-2	chr15	64241247	64242247	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	ORR1F|LTR|ERVL-MaLR	70926.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.44671783323982	6.06568415132124	6.34627795657042	6.38185366076953	6.36183250234531	6.46110674756183	0.173667996568753	0.54208823208623	0.857034750433211
Merged-chr15-59016594-7	chr15	59016079	59017079	+	975.0326539999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	T-rich|Low_complexity|Low_complexity	65447.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.97610906209714	5.75074120712368	5.24269931282929	5.76615561469164	5.7011602861253	5.47855950371189	-0.0848621569141146	0.817179953049434	0.956754861188725
Merged-chr18-68195215-4	chr18	68194698	68195698	+	936.9874880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-32748.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.75736605669884	6.86205957570776	6.82968417754448	6.86328380157366	6.84959600278917	6.91672061014486	0.0896108144987715	0.713713199089903	0.925594279345516
Merged-chr11-119728373-2	chr11	119727873	119728873	+	934.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 4 of 33)	RLTR11D|LTR|ERVK	105992.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	3.0830589643047	3.08869525471826	3.24374378205011	2.89494258694174	3.16397452691681	3.2041519834774	-0.183399652370303	0.783514487635857	0.947225267514266
Merged-chr2-35194225-2	chr2	35193725	35194725	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	6895.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	4.56211450690184	4.94679004491207	4.93265825385354	4.57039208563506	4.75320876650149	4.61988677557844	-0.387231953193956	0.356985457736373	0.743660865917135
Merged-chr17-5506769-2	chr17	5506269	5507269	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	14169.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	2.8827959152428	2.31677446898875	2.57283453863598	2.17884816176848	2.31142188219017	2.38613648371868	-2.07089376003996	0.0292418921903934	1
Merged-chr5-24025131-2	chr5	24024626	24025626	+	884.1666869999999	f0_balb.idr|f1_balb.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	5186.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.46346922736871	4.26573809007053	4.57089416347433	3.56504789851599	3.51316531336044	3.55719134046446	-2.93128375613811	4.31213776930959e-07	2.58690958549901e-05
Merged-chr2-170345685-4	chr2	170345176	170346176	+	991.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10685.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.37284307651447	6.44020204964144	6.63726341807459	6.49476045758812	6.32334640059731	6.32569046119766	-0.157403142846669	0.565231231889017	0.866599059240356
Merged-chr11-100472801-4	chr11	100472297	100473297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-15.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	6.38426973601499	6.85213725676705	6.27590118602069	6.55554539678151	6.28102224620231	6.69561654857354	-0.0409046412468743	0.895865478386976	0.975670463150487
Merged-chr17-15715400-4	chr17	15714912	15715912	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	B3|SINE|B2	10445.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	2.70000146229195	2.75951454350328	3.01343618022717	2.67103551006685	3.05403435620148	2.78851142438557	0.131224269179412	0.862652396877159	0.968083292979043
Merged-chr7-25783875-2	chr7	25783375	25784375	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4858.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	5.27824974798778	5.67295136438749	5.43240631459653	5.72281612019624	5.85636214190208	5.79932390394156	0.589655012184533	0.0762595723943547	0.363591937874712
Merged-chr6-83659518-3	chr6	83659021	83660021	+	977.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3405.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.95772547330831	6.1547274742471	5.78510559772322	5.31262181900977	4.66617059765257	4.96156583173255	-1.89244023500869	8.79750697442987e-07	4.85426366265491e-05
Merged-chr2-45653173-4	chr2	45652687	45653687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-43418.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.95970893203094	3.58858620307647	3.50805247637535	3.84732534249462	3.76593570489832	3.80261835307088	0.311878494230847	0.581123726842284	0.873228285171611
Merged-chr2-151533823-4	chr2	151533318	151534318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-8665.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	3.23448517543866	2.99890050874319	3.39520494836273	3.29842436181675	3.18572893001584	3.30334758644353	0.197935257487911	0.758855047180718	0.940310803499772
Merged-chr11-60224312-2	chr11	60223812	60224812	+	816.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1731.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	4.02364372839137	3.88151494582611	3.7926758849797	4.09640968178255	4.22924240132805	3.80937167673455	0.473944801126145	0.364537207065285	0.74990409323904
Merged-chr7-81008510-2	chr7	81008010	81009010	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	BGLII_B|LTR|ERVK	14826.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	3.05937423372088	3.03782424399962	2.98562592306395	3.09864458179863	3.07339134648003	3.23332453383976	0.457702644183612	0.483412763631617	0.826174950723369
Merged-chr3-89177377-4	chr3	89176841	89177841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001309909)	promoter-TSS (NM_001309909)	-50.0	NM_001309910	24045.0	Mm.257052	NM_011886	ENSMUSG00000028049	Scamp3	Sc3	secretory carrier membrane protein 3	protein-coding	5.32086203872137	5.69421430292871	5.66550559516155	5.46285148607912	5.43199181562689	5.3244041100783	-0.29948368338984	0.38356253458998	0.76494131641868
Merged-chr7-17024980-4	chr7	17024473	17025473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2941.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	7.86926041407611	7.98233485784821	7.84844647424056	8.20547366363118	8.53903345120224	7.95344851694478	0.510072722988656	0.0380169636950255	0.241294415362708
Merged-chr10-98915650-1	chr10	98915150	98916150	+	1000.0	f0_balb.idr	intron (NM_001359507, intron 1 of 21)	CpG	498.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.03641646714223	7.79970895623238	7.83021853919754	7.89829071118071	7.62287536463417	8.08719083979279	-0.0255168742300256	0.916157942894176	0.981243905880233
Merged-chr10-13837187-4	chr10	13836716	13837716	+	876.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31741.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	6.40641816122113	6.21652026831327	6.06991790646721	5.35735531040486	4.67953387392328	4.99276369011503	-2.28172956700149	1.64357762805877e-09	1.74215041115304e-07
Merged-chr19-57623872-2	chr19	57623377	57624377	+	936.5	f0_balb.idr|f1_balb.idr	intron (NM_181415, intron 1 of 28)	intron (NM_181415, intron 1 of 28)	12843.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	3.11607143912234	3.19210837890387	3.37200591531809	2.95921251718899	2.69753444127909	3.11648143155543	-1.39416192068692	0.054947157239488	0.301168767510923
Merged-chr2-167634598-4	chr2	167634101	167635101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2596.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	7.60114810964157	7.93013899112385	7.59650779823848	7.575943891862	8.23234852582895	7.42296954722527	0.121215692085534	0.685115292415424	0.916158929855081
Merged-chr16-85133668-4	chr16	85133201	85134201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	40006.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.99492276968126	7.27181175202175	7.27119464572192	7.12322350717882	7.41904110933393	7.05860275776259	0.0542506494312355	0.833475785292763	0.96108264611081
Merged-chr19-46641631-4	chr19	46641113	46642113	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177813, intron 1 of 3)	intron (NM_001177813, intron 1 of 3)	18212.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.90540079282972	4.78826579188235	5.07364855073574	4.85902789335759	4.66718439871873	4.86199117909517	-0.285363594855448	0.469281412139726	0.818943090863774
Merged-chr9-21133184-2	chr9	21132684	21133684	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1909.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	2.70077757508281	2.59491055843874	2.60227485523648	2.83720810536077	2.60733841623538	2.86375731046974	0.727946621631685	0.334798879116216	0.725198429760335
Merged-chr9-35027870-4	chr9	35027369	35028369	+	876.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-88859.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.83115287016366	2.51358225439425	2.82891053739423	2.6939243620475	2.51003733783725	3.07176483092525	0.227645352340484	0.778383658580111	0.945441651271158
Merged-chr17-13591083-3	chr17	13590599	13591599	+	795.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37005.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	4.3168654763558	4.00428240888628	4.00130963708928	4.97412273229236	4.22683114244059	5.25313067399308	1.86942046249476	0.000596845313168005	0.0121009514663946
Merged-chr7-28387225-2	chr7	28386725	28387725	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	B1_Mus1|SINE|Alu	5465.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	5.9918409397247	5.60211146242245	6.05183504385915	5.49879943566194	5.5270010151993	5.69347396807707	-0.583536583769	0.0797712154533268	0.37356229021667
Merged-chr17-71143455-4	chr17	71142915	71143915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-40117.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.15713428014292	4.89365098297449	5.07615099453657	4.76506582037177	5.05676242025043	4.89188682724722	-0.275759582103369	0.477288434412848	0.823237639056184
Merged-chr10-51489827-2	chr10	51489327	51490327	+	677.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1071.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	5.67720508643266	5.89296378373167	5.8167627610907	5.13947776980641	5.26729875583349	5.48563105805173	-0.953251279917179	0.00448964557781478	0.0567914912190351
Merged-chr12-76550615-2	chr12	76550115	76551115	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-2690.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.70585808911762	3.50724449055123	3.70104641871613	3.73740436326988	3.17959466785653	3.96077554784167	0.0831032089327463	0.897456298922432	0.976023313563425
Merged-chr3-27184848-3	chr3	27184377	27185377	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	1873.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.46480330323098	4.18986003540421	4.20173206195484	4.1624233810802	4.39642986162613	4.17484816762194	-0.103856332920073	0.826019076309849	0.959051716454082
Merged-chr8-122550370-4	chr8	122549876	122550876	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	953.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	5.18617912879675	4.98405746995993	4.89033237155485	4.95898973489701	4.94332129391096	4.75774044637425	-0.295218965328118	0.444282134474652	0.804143628616024
Merged-chr7-44748450-4	chr7	44747954	44748954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133945)	promoter-TSS (NM_133945)	-63.0	NM_001289839	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	6.84271240965245	7.08616335317081	6.97279892670892	6.90212020342412	7.10318938555576	6.68116783974411	-0.0812627035664293	0.75918465532357	0.940311236380535
Merged-chr12-79356364-4	chr12	79355895	79356895	+	944.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	59044.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	3.39218637579533	3.24822250021839	3.31556555911057	3.70409394873802	3.65358013706691	3.66654720896147	1.32031907445969	0.0236765393691913	0.180443074540362
Merged-chr4-149698571-5	chr4	149698089	149699089	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164050, exon 1 of 24)	5' UTR (NM_001164050, exon 1 of 24)	119.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	7.12483760871708	7.20600832991988	7.29918082849897	6.96773358034403	7.23378024096192	7.04214691435847	-0.174582584625074	0.474388101261511	0.82139231300766
Merged-chr3-119933444-4	chr3	119932936	119933936	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150048.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	3.43245302678583	3.75373468885129	3.50991830353586	3.67048673488791	3.6060817322568	3.58119376398761	0.148455985253316	0.795265903163137	0.951079860758379
Merged-chr7-67243019-3	chr7	67242527	67243527	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20411.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	7.38127148621864	7.45713268274778	7.32970667573055	7.10508430976618	7.6043086752337	7.07996011365131	-0.136702429373796	0.608703646113336	0.885006356798728
Merged-chr1-57378155-1	chr1	57377655	57378655	+	784.0	f0_c57.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	535.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	6.38015466408545	6.77836603926785	6.52650672303399	6.5905470580348	6.59893582511494	6.23262339083226	-0.130158201231816	0.65525943192046	0.904177720420701
Merged-chr13-18717312-4	chr13	18716813	18717813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172120)	promoter-TSS (NM_172120)	21.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	6.73335018861318	7.49867736239893	6.72543961456527	6.79243162951234	6.83466747544116	6.53872082136982	-0.488287098884373	0.132727268450112	0.487556413062975
Merged-chr17-24737671-4	chr17	24737170	24738170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 1 of 4)	intron (NM_013759, intron 1 of 4)	1077.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	7.02235303315833	6.89088919437904	6.88547198877431	7.21620203916212	7.35141825150536	7.06956330188524	0.436221746017787	0.0748304080744926	0.360099970797662
Merged-chr4-10874038-4	chr4	10873506	10874506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-492.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	7.30513665244726	7.32290646373956	7.16960385626988	7.17816226694547	7.04275063472598	7.15301933423511	-0.224226960744198	0.33898175753519	0.728951920358235
Merged-chr11-118458167-2	chr11	118457667	118458667	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-3172.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	7.85752006573142	7.87325872993818	7.7113524176248	7.67356317787035	7.7752611560774	7.57025563278718	-0.199783904070202	0.366675807816357	0.751801508434157
Merged-chr9-57874337-4	chr9	57873836	57874836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36650.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	5.87794583190157	5.49370314271433	5.28845603291374	6.13416357313575	6.17978575820802	5.49224773843084	0.705066446229064	0.0651665805695176	0.332860707068093
Merged-chr3-116124396-1	chr3	116123896	116124896	+	591.0	f0_balb.idr	exon (NM_011693, exon 4 of 9)	exon (NM_011693, exon 4 of 9)	5292.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.97341962350067	5.26593852482475	5.40705955776873	4.73785559580674	4.88028584550842	5.27000760706812	-0.525311202373675	0.193393799453051	0.580516279397168
Merged-chr10-80856679-2	chr10	80856179	80857179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175195, intron 1 of 14)	intron (NM_175195, intron 1 of 14)	1404.0	NM_175195	73218.0	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	2.25494681657102	2.07825006970892	2.44237567179209	1.92955899710202	2.01004797336266	2.20320159665213	-1.63035933264267	0.0987165942383257	1
Merged-chr11-60913804-4	chr11	60913299	60914299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025294)	promoter-TSS (NM_025294)	-7.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	6.39409744498104	6.57506875737139	6.58045084017272	6.50030242172099	6.3407109099052	6.29009794231067	-0.218715758670638	0.419893810112372	0.789348043413415
Merged-chr6-38352147-4	chr6	38351625	38352625	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	2478.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	5.87390293553619	5.86387126037617	5.38309056458848	5.93240962354735	6.05201133323076	6.02534090370794	0.463159651133952	0.157380913173014	0.528623968470245
Merged-chr8-71752475-4	chr8	71751962	71752962	+	863.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26781.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	5.15214652254421	4.70241581772791	4.92154511688399	5.77848252934881	6.04950466951334	5.14728423550707	1.53411716452813	0.000258501791383468	0.00617718374574439
Merged-chr17-29489722-4	chr17	29489224	29490224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1321.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	9.10109269774198	9.14272748145351	8.61075614241215	8.88438542374294	9.33935358754021	8.69654556846391	0.0423107085933534	0.875302730938547	0.970953455305683
Merged-chr6-129369919-4	chr6	129369432	129370432	+	941.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	15571.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	5.76089273848681	5.81261606115205	6.00225421076827	5.91212605100447	5.68730753403637	5.87965480038379	-0.0556135706491811	0.857343736519515	0.966747388099837
Merged-chr4-135898571-4	chr4	135898066	135899066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009924, intron 1 of 1)	MIRb|SINE|MIR	3377.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	4.77246122818527	4.94651844873198	4.60478382216173	4.88162154900596	4.34005498997403	4.13841928635525	-0.679203960391498	0.165554341580043	0.540680024106766
Merged-chr8-57541137-4	chr8	57540627	57541627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29284.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	7.10156893805801	7.08228229112042	6.90146437810541	7.04228353912435	7.07094969303444	6.79204024488862	-0.0829568323934626	0.740969394750508	0.934712654423072
Merged-chr6-47841036-4	chr6	47840529	47841529	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027477, intron 2 of 5)	intron (NM_027477, intron 2 of 5)	5368.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	4.95113385377767	5.03482245851293	5.18594415139332	5.01919879039713	5.15651478539146	5.30954798140692	0.227764680241834	0.535818004345899	0.853668337370661
Merged-chr3-89905206-4	chr3	89904722	89905722	+	920.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7974.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	5.66561669220976	6.04239861454018	5.84885545622578	5.99231479596181	6.0941766063221	6.11713910653656	0.354446150489998	0.248185651009741	0.645329537512171
Merged-chr1-88243057-2	chr1	88242557	88243557	+	837.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 21 of 41)	intron (NM_001281466, intron 21 of 41)	16037.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.23790040015212	3.54812423697882	3.38208329753021	3.01698095409313	2.90895735787331	3.60603206603799	-0.721712334037697	0.318891045823445	0.71294228977584
Merged-chr5-105568272-4	chr5	105567787	105568787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48816.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.08219317904509	6.93862936154837	6.86400146404282	7.17582652102231	7.35376087239112	6.67810858280069	0.220426792105991	0.439248181998827	0.801063133660301
Merged-chr2-158310884-2	chr2	158310398	158311398	+	739.916626	f0_c57.idr|f1_c57bl6.idr	intron (NM_008489, intron 3 of 14)	intron (NM_008489, intron 3 of 14)	4405.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	3.05695459584458	2.93682961536617	3.37601079346527	4.01690664504019	3.90123826578083	3.72999514779585	3.24105705140805	5.59470779107522e-06	0.000243410758397489
Merged-chr13-43765437-4	chr13	43764935	43765935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19677.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.70023828375339	7.27820113657209	6.98594464706485	6.82892971587322	6.97581892333056	6.46998531003085	-0.872606728270314	0.00454848443033515	0.0572745599998982
Merged-chr6-65161956-2	chr6	65161456	65162456	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17226.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	3.99996266644957	3.78881007375113	3.739587878303	3.98728123177181	3.82873447269518	4.06091807143416	0.318960397652368	0.540100272124586	0.856319360692709
Merged-chr13-102860318-3	chr13	102859836	102860836	+	844.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	100081.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.21489121849389	3.21292088387113	3.15112027632501	3.19769776805181	3.14439728538633	3.33604055395512	0.116903503423648	0.852125764651506	0.96531854415899
Merged-chr2-136936598-3	chr2	136936097	136937097	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37246.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	5.55303119615107	5.9095761861113	5.90643270914508	5.35068002960872	5.25905371440129	5.85401568714865	-0.55078530183884	0.130471281124925	0.482676025154672
Merged-chr9-64050124-2	chr9	64049624	64050624	+	813.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_040713, intron 1 of 2)	intron (NR_040713, intron 1 of 2)	295.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	2.70653882705104	2.51181923274078	2.40970608173543	2.58904784714114	2.43776302297721	2.67992893365278	0.0973110630268155	0.904332327700811	1
Merged-chr3-65551349-4	chr3	65550851	65551851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-21937.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	5.17535636637164	4.80617588712664	4.87123295515254	5.08763895127019	4.92238367819525	5.04573815864115	0.108721447266564	0.779686159856602	0.945881582628859
Merged-chr6-97293298-3	chr6	97292734	97293734	+	737.616638	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-40454.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.57795631570833	4.29353465787176	4.16845020129605	4.70908281476898	4.73418969174303	4.60829283080997	0.786989726313292	0.077795028392329	0.368212100254204
Merged-chr16-87441105-2	chr16	87440605	87441605	+	903.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016924)	promoter-TSS (NM_016924)	-513.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	6.2106290061595	6.43294787664616	6.3428209561182	6.27682229951625	6.37629814095549	6.11100083835302	-0.105472152470831	0.709006487934198	0.923861312746116
Merged-chr1-191193807-4	chr1	191193261	191194261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10428.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.94802385535622	6.68229367119826	6.17445644670568	6.68420954214065	6.84895767521804	6.46984380691701	0.0484864548819535	0.879016226576118	0.972074795996392
Merged-chr7-101871534-4	chr7	101871059	101872059	+	980.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008034)	promoter-TSS (NM_008034)	-771.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	5.83481921297607	5.81190785082366	6.13741886209612	6.10947954475133	6.34711308792053	6.5906040012673	0.732829911673925	0.0180337239029103	0.150982593828611
Merged-chr1-39583389-4	chr1	39582898	39583898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-6051.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	5.79647810149517	5.68222965438103	5.58526811075099	5.27960033024756	5.39410848974939	5.75193001078106	-0.406243194108714	0.233833110051172	0.630121355137759
Merged-chr19-5088423-4	chr19	5087916	5088916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-122.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	5.74984009946483	5.64013189486218	5.78046080268428	5.80852792903348	5.84837883221236	6.07144527167141	0.333096726971559	0.279560807072228	0.677255528426529
Merged-chr1-106882923-4	chr1	106882438	106883438	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360853, exon 8 of 8)	3' UTR (NM_001360853, exon 8 of 8)	21763.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	4.60548101680147	4.8477563555379	4.49213850397704	4.16322588862402	4.08669392975312	4.4312394440504	-1.13769025184599	0.0131032668676877	0.121468019577008
Merged-chr9-75558652-6	chr9	75558194	75559194	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	963.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	6.87769374382179	6.81516740936947	6.77243554767554	6.8974695493353	7.07645625952816	6.92022133236295	0.226765430345869	0.357269725082378	0.743880571645134
Merged-chr5-99222161-2	chr5	99221661	99222661	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 12 of 13)	intron (NM_181318, intron 12 of 13)	30766.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.93769037611361	3.61048321307207	4.44624892992964	3.96225806631697	4.06177070776922	4.39751974341395	0.312238976041268	0.589205500179888	0.87677329959816
Merged-chr11-32539390-2	chr11	32538890	32539890	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	RMER5|LTR|ERV1	6124.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.18575051572147	6.70523627694377	6.69678569683705	7.06372809530496	7.32887504823594	6.97144559858605	0.374347425733302	0.188801115197319	0.574313197095069
Merged-chr7-63940483-3	chr7	63939973	63940973	+	820.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	4.4552135872938	4.12333887770168	4.1013585234761	4.79846277437313	4.65787807718408	4.89337866463773	1.33101015588352	0.00363231455560702	0.0484743591889253
Merged-chr13-23586857-3	chr13	23586372	23587372	+	819.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	-902.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	6.34462349673826	6.72433204407457	6.48299477268549	6.52532638514674	6.92147423865529	6.77439546049373	0.354349442976306	0.214397712507652	0.607538973573768
Merged-chr16-15889061-3	chr16	15888578	15889578	+	867.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_146068)	TTS (NM_146068)	1792.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.42952062347795	5.9628541350056	5.71693374825965	5.98304375922667	6.24461722775626	6.09221628008562	0.681908384963912	0.0390410336469646	0.245097806526077
Merged-chr7-141465842-2	chr7	141465342	141466342	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025103, intron 9 of 9)	intron (NM_001025103, intron 9 of 9)	-1520.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	5.13646567495125	4.95778040877721	5.17778550315677	4.71195225874719	4.7441862086575	5.17901963844438	-0.450074729570277	0.259380431860017	0.656942348467668
Merged-chr6-87010075-5	chr6	87009536	87010536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020045, intron 1 of 7)	CpG	200.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	7.70066698808909	7.54023904057084	7.69015373406711	7.30693271956112	7.61399964747617	7.26788737970413	-0.33422554827176	0.166151629324077	0.541298216748719
Merged-chr3-95651435-4	chr3	95650940	95651940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7281.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.82749134612706	8.97739230255556	8.68478565105974	8.76565424405404	9.1475145621381	8.72531354201269	0.0837699245941776	0.715512623632935	0.926402055104375
Merged-chr17-23707718-2	chr17	23707218	23708218	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18618.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	3.03833563426754	2.98301610556363	3.04603878240958	2.94299310699044	2.67082819455744	2.94084026273596	-0.83284546449448	0.242686919830409	0.63982425224957
Merged-chr10-24131650-4	chr10	24131137	24132137	+	941.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17652.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	3.52950378939538	3.2706363696348	3.5703418751792	3.59100222280688	3.52316011149027	3.69156219032781	0.509860888362381	0.381488078481744	0.763159591150381
Merged-chr5-28242189-3	chr5	28241691	28242691	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	3597.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	3.25779407974447	3.0763851152836	3.44993356517076	3.59971342698748	3.75186295927061	3.52173237986926	1.42501801241977	0.0214514321651943	0.169219830072193
Merged-chr18-78805216-4	chr18	78804705	78805705	+	863.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	T-rich|Low_complexity|Low_complexity	-208255.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	2.98781128525828	3.0096622694803	3.34347323902589	3.1655869163245	3.08703176102612	3.41347427071607	0.454012368480431	0.497234635964923	0.833500500620649
Merged-chr5-33938637-4	chr5	33938098	33939098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-2340.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	5.11752624199969	5.39377721982406	5.03014327466045	4.85190675933775	4.42651458755731	4.53196460300943	-1.29653236090809	0.00189528580869618	0.0296601357099853
Merged-chr2-34914255-4	chr2	34913765	34914765	+	933.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028716)	promoter-TSS (NM_028716)	-289.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	4.90810954128037	4.94272808412081	4.56216312633564	4.69320399534139	4.54824325893529	4.83173139694264	-0.320906218914845	0.441839839579745	0.802999352423289
Merged-chr13-51312162-4	chr13	51311664	51312664	+	919.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96454.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	3.44017924848551	3.90906494927994	3.66242325926769	3.6417626936065	3.68448246704444	3.56973021187088	-0.181547033157226	0.753720735581854	0.938570691167124
Merged-chr4-43041016-2	chr4	43040516	43041516	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-715.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	6.28642508750669	6.41618155966337	6.4540364554877	6.49275937497007	6.68589072774553	6.74229594748509	0.418714014767377	0.117599796897613	0.457794860113807
Merged-chr15-83350203-4	chr15	83349704	83350704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025445)	promoter-TSS (NM_025445)	43.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	7.05243786465145	7.07232206062928	6.70864761668935	6.95878236426809	6.71875154392236	6.59524371291524	-0.298461550630055	0.272317241478521	0.669650767767379
Merged-chr19-29816362-4	chr19	29815848	29816848	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3374.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	4.69183247999751	4.75455725572438	4.79133460805578	4.23806268974487	4.29557679068733	4.22978702629725	-1.22736793230447	0.00463420436860262	0.0581077271101095
Merged-chr3-135443556-2	chr3	135443056	135444056	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	4430.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	3.22596417086961	3.51338513827449	3.49858564735857	3.2708891318805	3.21317644619095	3.11329901510106	-0.861852147963932	0.174967575262012	0.554639421945212
Merged-chr13-20108107-4	chr13	20107600	20108600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	17593.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.35977210477929	5.08342525932518	4.73065081955751	5.22965845510443	5.21224120537745	4.96440599268483	0.104416740064724	0.796150832051814	0.95140420098761
Merged-chr17-5190772-2	chr17	5190272	5191272	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195698.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.84134280328563	5.11792954760266	5.36500372796854	4.99621955573403	5.13671946606195	5.21996914569758	0.00742280021664198	0.984657255575472	0.996713348248997
Merged-chr9-120052444-3	chr9	120051950	120052950	+	731.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	15846.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.1785736836386	5.23771017552807	4.79962198144708	4.22680157803445	4.13024199815791	4.13088573857445	-2.31719571036065	3.09102930759641e-07	1.926579525292e-05
Merged-chr17-46144251-4	chr17	46143758	46144758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029338)	promoter-TSS (NM_029338)	-60.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	4.31444525956124	4.55891531193859	4.62783345203661	4.41895247977215	4.50401914878597	4.73053584486551	0.119925694703605	0.784367782569746	0.947576747080331
Merged-chr2-153144960-2	chr2	153144460	153145460	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-16341.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	5.35681884351682	5.10884535917977	5.57915397978674	5.14579610477193	4.89240251752443	5.51123670294835	-0.320467764305684	0.420817014368171	0.789927346042947
Merged-chr9-74953451-3	chr9	74952958	74953958	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113283, intron 1 of 12)	intron (NM_001113283, intron 1 of 12)	405.0	NM_001113283	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	6.82623393619844	7.19311836856335	6.78795574895702	7.02543507546889	6.99801862416073	7.00586828102189	0.0789782091752533	0.762435943886894	0.941561416958418
Merged-chr2-103945551-2	chr2	103945051	103946051	+	832.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12444.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.62102153579888	6.82370303719976	6.5850369757712	6.52079488686893	6.7487425258543	6.93116794182967	0.0845053977713837	0.756551148656097	0.939629132869937
Merged-chr5-123915060-2	chr5	123914560	123915560	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026603, intron 2 of 7)	intron (NM_026603, intron 2 of 7)	7785.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	3.40544093460182	3.54437827840615	3.41643431379993	3.51104455749249	3.46264059781773	3.48775260689671	0.0992143182485637	0.863333279621508	0.96822816879546
Merged-chr5-121546339-2	chr5	121545839	121546839	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-447.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	7.44989961251146	7.78321723094056	7.46794290648667	7.41880910299686	7.82306156004468	7.33819178671919	-0.0374064564614969	0.887535632512889	0.973836995667151
Merged-chr5-21217010-2	chr5	21216510	21217510	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	30743.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.08832547071205	2.97443483247732	3.15521894009332	3.03524255900838	2.56748784923892	3.17138732004573	-0.554897799774338	0.482541599888663	0.825695582331598
Merged-chr15-64266812-4	chr15	64266298	64267298	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	45875.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.97545631537792	4.95891371527683	5.34658872334917	5.23996815922482	5.44702871347317	5.43804372312374	0.582708404527714	0.111493688159587	0.446017634826102
Merged-chr5-143329203-4	chr5	143328721	143329721	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028379)	promoter-TSS (NM_028379)	17.0	NM_001359445	72881.0	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik|DHHC-4	zinc finger, DHHC domain containing 4	protein-coding	7.14563954790261	7.47593770919865	7.30581713306419	7.27406477423857	7.45085569464719	7.08043868471338	-0.0468844601502486	0.853643972843365	0.965752330271851
Merged-chr10-125390198-4	chr10	125389690	125390690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61227.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	7.41341458431355	7.25449759797727	7.37142507376007	7.60141083597479	7.89539649603981	7.53330361006439	0.507467787750064	0.034196882280965	0.226296658249923
Merged-chr13-37619447-3	chr13	37618956	37619956	+	803.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-206582.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.75557799127295	6.47240460444466	6.5501223283826	6.80065711917791	6.51190402570162	6.3656899726438	-0.0369009508961258	0.896388022990674	0.975806926657291
Merged-chr5-67823848-4	chr5	67823311	67824311	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	23620.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.48191620270162	5.51690622246432	5.40188136042674	5.54781381952089	5.72340954394237	5.37069096977384	0.182796828537007	0.585309664101333	0.874951880612681
Merged-chr12-51868978-2	chr12	51868506	51869506	+	670.0	f0_balb.idr|f1_balb.idr	Intergenic	RMER17C2|LTR|ERVK	-39470.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	3.96525634749123	3.70487814158487	3.7061649209245	3.28782073110397	3.26659680352085	3.50897642535114	-1.6756175708065	0.00516558259803846	0.0625436158889588
Merged-chr3-106790118-4	chr3	106789607	106790607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007651)	promoter-TSS (NM_007651)	42.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	8.01556526599272	8.15206377827791	7.71172456216343	8.03504389718949	8.39200025958155	7.9953570436434	0.254761977033613	0.307532591945658	0.70366279189546
Merged-chr19-5117604-4	chr19	5117101	5118101	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045528, intron 1 of 15)	CpG	807.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	3.86438875756109	3.79320269188486	4.32357572633359	3.84780483031764	3.77527298381986	4.09906523975527	-0.29317564241503	0.589841272116693	0.877024090368969
Merged-chr10-59225282-4	chr10	59224747	59225747	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	3325.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	4.6254432723458	4.78107050615229	4.93824444018294	5.22341074424784	5.22976318225646	5.03924126189206	0.854993337915011	0.0248284814110975	0.186241342074116
Merged-chr8-117802057-4	chr8	117801534	117802534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-60.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	6.54581328899007	6.78730323743955	6.63184226932901	6.62667030096958	6.86580666266856	6.22774397566232	-0.0711486722242109	0.811575929001223	0.955304895434479
Merged-chr5-147758273-4	chr5	147757762	147758762	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32274.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	5.60454977935611	6.28258364641204	6.1838344454275	6.75093352506889	6.89471358866348	6.3484490155406	1.03655558421704	0.00228192132458866	0.0341807577995272
Merged-chr2-59176644-2	chr2	59176144	59177144	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	15794.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.61439922141646	5.54381243242347	5.62754849260409	5.62976901781491	6.0646370911077	5.84543587814896	0.497387211967774	0.125606562377701	0.474191879348443
Merged-chr10-118981281-3	chr10	118980779	118981779	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-54136.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	4.93055208228616	4.52113486584507	4.66169848338069	4.5398650828587	4.48884808504427	4.33554212469357	-0.620071080668986	0.15747043320071	0.528765125333521
Merged-chr5-135370676-2	chr5	135370176	135371176	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153312, intron 2 of 9)	ID4|SINE|ID	723.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	3.52619610002084	3.43612985565229	3.63970765325696	3.44518456622643	3.26264172655383	3.60792502170501	-0.352790024159029	0.552283524064392	0.861602059966062
Merged-chr17-71096354-2	chr17	71095841	71096841	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	76784.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	4.20437351113111	4.19296691562424	4.00922502732368	3.92210542921942	3.98372115958185	4.02922467329708	-0.48841754497059	0.315712578494957	0.709937362684333
Merged-chr1-80715706-3	chr1	80715188	80716188	+	896.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42865.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.06585877045536	3.80748941584186	3.8952553212987	3.86149418888408	3.98178600285412	4.19743654219399	0.257790342046147	0.615467096378356	0.887983530230445
Merged-chr15-98533966-4	chr15	98533463	98534463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153345, exon 1 of 11)	non-coding (NR_153345, exon 1 of 11)	306.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	8.20747447804593	8.1235257870465	7.92981409649322	7.98459572415015	8.19271113200971	7.82959628882022	-0.110849159992675	0.631386923262246	0.895122791781359
Merged-chr17-71552011-4	chr17	71551494	71552494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142631)	promoter-TSS (NM_001142631)	-67.0	NM_001142631	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	4.76721255839261	4.55524078846477	4.86902145057699	4.58636587772551	4.32300074006941	4.01242034728525	-0.97868271458786	0.0414685009614121	0.254570639932752
Merged-chr2-170152346-2	chr2	170151846	170152846	+	838.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.54318396648637	4.58553943535531	5.09891422891135	4.6369990344282	4.68271786586521	4.64199558450669	-0.229912357673021	0.598393199543639	0.880780437003557
Merged-chr10-81412382-3	chr10	81411891	81412891	+	587.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152732)	TTS (NR_152732)	2816.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.46837287531442	5.52284394878526	5.37186295948352	5.42764453594427	5.35753298213479	5.55197523954786	-0.0395760301747382	0.905119100610589	0.978232606263309
Merged-chr19-32180353-4	chr19	32179873	32180873	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	30640.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.01885670342284	5.75241354431646	4.79587817890899	4.82212893303877	4.98516302316874	4.52459077489818	-1.69091716680927	0.0331496126444042	0.222078216430533
Merged-chr17-26886234-4	chr17	26885724	26886724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-30867.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	5.16406942425093	5.54612938193315	5.40412517410666	5.10468257673394	5.12637669829396	4.76016713430525	-0.738488423312837	0.0555090797116028	0.302994020075731
Merged-chr5-64376681-4	chr5	64376172	64377172	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	91270.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.77653892356212	6.47050280231751	6.67422718144613	6.94934985111742	7.17397524580411	7.03886089703022	0.643243676923087	0.0131411199879715	0.12164270908434
Merged-chr7-126781481-2	chr7	126780981	126781981	+	596.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-2.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	3.18361219299474	2.84488396029114	3.55123120658766	3.13396044930986	3.08170428609016	2.96355281827204	-0.669611273545189	0.358904849690206	0.74519810754794
Merged-chr11-78177532-4	chr11	78177023	78178023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291235)	promoter-TSS (NM_001291235)	-626.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	6.59799748669553	6.25653494926966	5.59741141912869	6.46278777194941	6.62177837648849	6.22343882334608	0.364233201507341	0.322779235551851	0.716189291800176
Merged-chr12-85533810-4	chr12	85533297	85534297	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	59907.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.3185846106652	8.3448779900348	8.14883746424433	7.96257935591548	8.32559719759313	8.22447367859662	-0.132909836874273	0.55397116140881	0.862575362378324
Merged-chr5-144100336-4	chr5	144099849	144100849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081109)	promoter-TSS (NM_001081109)	-87.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	3.66508605000535	3.89353253852723	4.00888357994213	4.31723644364774	3.71723568315695	3.53724512790272	0.134475875227604	0.824223929056927	0.958523256704056
Merged-chr6-72145676-3	chr6	72145208	72146208	+	837.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	Tigger5b|DNA|TcMar-Tigger	-22511.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.19133653845138	4.08618296628797	4.57070885138864	4.08466083380107	3.75877634236104	4.52559944555977	-0.377992427281554	0.491974623456903	0.830854971962696
Merged-chr1-152613836-4	chr1	152613310	152614310	+	986.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	11407.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.27444983649823	7.41501800327316	7.17602852127085	7.2574973117594	7.44516645737338	7.1190345023721	-0.011380055007179	0.963003709535457	0.991018409557203
Merged-chr14-30870368-3	chr14	30869864	30870864	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-8893.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	5.04982506205277	4.78349420415701	5.15485134388483	4.82111031009482	4.46820924586001	4.46969653117967	-0.915761782728898	0.0311991627401084	0.213923982995459
Merged-chr16-75869497-4	chr16	75868999	75869999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 7 of 7)	intron (NM_023380, intron 7 of 7)	39767.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	5.39416190426369	5.1355052456775	5.13523096479855	5.36291819100665	5.45918739138935	5.42517049186584	0.365630544794356	0.293386397354716	0.690270184671471
Merged-chr6-116726302-3	chr6	116725831	116726831	+	755.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER57E1|LTR|ERV1	-9573.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	3.9875322057614	3.96981031549919	3.82973795239946	3.68059301107314	3.54245162310692	4.26072564349299	-0.228819915647959	0.693695854767445	0.918993212493267
Merged-chr11-84597775-4	chr11	84597271	84598271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72111.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	5.81924816155194	6.02267824174286	6.31404170670236	5.91385290666528	6.29185433498948	6.22070738608221	0.16595117441475	0.602477691396103	0.882349532183277
Merged-chr17-31294529-2	chr17	31294029	31295029	+	754.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-954.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	4.96877037075585	4.70957363686298	4.6506084136632	5.16444998891817	5.23938472664433	5.54742525236877	1.1161574076876	0.00467419613219146	0.0584409780692195
Merged-chr11-32555607-3	chr11	32555111	32556111	+	687.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	22345.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.49667046146669	6.29566839058264	6.62510364344748	6.554988971772	6.36410443069163	6.53496697125477	0.0174253725095638	0.949627834323885	0.988243921877722
Merged-chr11-11540739-3	chr11	11540246	11541246	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51480.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.42180748812108	3.71146295828209	3.33377597250521	4.11830592677872	4.14507692442392	3.98023978636177	1.88732627582954	0.00159332718958037	0.0259244366035595
Merged-chr12-101975210-2	chr12	101974710	101975710	+	876.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	-764.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	7.8004103397329	8.17659468185926	7.84312972955865	7.89444331358809	8.05831091271776	7.89939463860702	-0.000102259968982555	0.999651221592332	0.999920050950963
Merged-chr4-32239999-4	chr4	32239512	32240512	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-177423.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.0346248967595	4.8319452366343	4.92600906497021	4.55924498335095	4.2895001694713	4.33587493648052	-1.28242451833116	0.00247269751769874	0.0364156132836597
Merged-chr6-84016269-2	chr6	84015769	84016769	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-3117.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	2.25720881447742	2.36241837292605	2.6011309934242	2.19896632101367	2.08447094321241	2.49430365234651	-0.952452686408798	0.298848918888322	1
Merged-chr15-78815439-2	chr15	78814939	78815939	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12397.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	5.24094253932316	5.26965006606199	5.35309239691932	4.96427453114979	5.31819441555727	5.02082183996087	-0.329345178926209	0.371175655339299	0.755352037095081
Merged-chr7-110379536-4	chr7	110379037	110380037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	157834.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.37864896678302	5.41725867789864	5.26005702413464	5.34366267604533	5.83563844797408	5.67784531951098	0.537014867612555	0.125032429302837	0.473174984192042
Merged-chr9-63985866-2	chr9	63985366	63986366	+	745.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 3 of 3)	B3|SINE|B2	36193.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.20871763064481	4.0852174468384	4.06120854022198	4.37609497162386	3.94904025473805	3.69380239668967	-0.223469971269841	0.681610161284188	0.914750057259314
Merged-chr2-181497710-4	chr2	181497163	181498163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111899, intron 1 of 5)	intron (NR_111899, intron 1 of 5)	521.0	NM_001291204	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	8.1174907332531	8.48131174366434	7.97830745525313	7.97184091558067	8.18202507030743	7.7342586504912	-0.333411371335417	0.195807212686457	0.583465154167297
Merged-chr15-93399817-4	chr15	93399312	93400312	+	824.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358749, intron 2 of 8)	T-rich|Low_complexity|Low_complexity	1348.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	4.38774940202479	4.40943841513219	4.28548367549208	4.76996126685375	4.9860675357216	4.86002249131103	1.22793759931857	0.00337424917695189	0.0458990559940842
Merged-chr6-52842763-4	chr6	52842261	52843261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173406, intron 2 of 4)	MTC|LTR|ERVL-MaLR	66859.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	3.96193979493634	4.03133989061623	3.88041503109522	4.08010563049965	3.77795662742636	3.9504369429827	-0.0780211175111314	0.878484192083687	0.971925535382153
Merged-chr9-114934712-1	chr9	114934212	114935212	+	1000.0	f1_balb.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-725.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	3.64873857815362	3.47727003724783	3.75207179370948	3.97226495063684	3.69960334170637	3.66436989360343	0.543474113368909	0.328872816149089	0.721038398138001
Merged-chr1-36262302-4	chr1	36261813	36262813	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	11112.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	5.80647844522444	6.05630339117755	6.00316429669989	6.05245997031113	6.16135155535204	6.12999796938723	0.27249776472239	0.35259917620478	0.740194084833795
Merged-chr7-141456072-4	chr7	141455570	141456570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025802, intron 1 of 7)	intron (NM_025802, intron 1 of 7)	882.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	7.70422089353379	7.7298210338277	7.69093387909894	7.63408172993457	8.13790327368621	7.6744005083749	0.197263506500339	0.429711093745066	0.795863007201232
Merged-chr19-16009852-4	chr19	16009350	16010350	+	741.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	24775.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	5.06534626557905	5.45944529426507	5.42950323792296	5.63232554984888	5.62009180318458	5.80935449093463	0.680302530984808	0.0494291667740194	0.28269311354269
Merged-chr1-54903090-4	chr1	54902573	54903573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	RMER19B|LTR|ERVK	23314.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.77069365258474	5.75284243474105	5.82691488507941	5.31788659421098	5.35430484207366	5.66438092984171	-0.634516905087821	0.0524064842510554	0.292758559352925
Merged-chr9-118761699-2	chr9	118761199	118762199	+	745.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	MTEa|LTR|ERVL-MaLR	50007.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.1122920765488	5.05063340773144	5.31176597584495	5.30775225613511	5.02558859997904	5.22028620956799	0.0613320326478486	0.86682958597967	0.969114221403526
Merged-chr11-107342595-4	chr11	107342116	107343116	+	967.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	MTC|LTR|ERVL-MaLR	128104.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.85184701211226	7.07852107252696	6.57936071440537	6.88909805106145	7.16136779346055	6.65675818119661	0.104146731569163	0.720352169537382	0.928142072321482
Merged-chr12-25102080-2	chr12	25101576	25102576	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-5984.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	3.61956520399736	3.67455590978167	3.71888725979657	3.75247407647684	3.61128541438846	3.57571340763779	-0.0672466674219272	0.901908019302561	0.977365418427752
Merged-chr1-144249153-4	chr1	144248670	144249670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015811)	promoter-TSS (NM_015811)	-66.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	7.09760702776842	6.96772154005274	6.91702563712615	6.79972977011043	7.03279286129974	6.74805957248402	-0.190178442352435	0.454931295654459	0.810663309750856
Merged-chr7-25269871-4	chr7	25269361	25270361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2162.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	7.84443849623094	7.7421806623163	7.27150745616068	7.40224156633837	7.55873036608625	7.26793961562245	-0.339245978574938	0.200042255351104	0.588832460140605
Merged-chr17-28234494-2	chr17	28233994	28234994	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	1740.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	3.18755355013382	2.97333837621298	3.00706211035662	2.82447818327186	2.80692583244025	2.95974976350466	-0.969749053162469	0.164749855790685	0.539419247854745
Merged-chr17-34850889-2	chr17	34850389	34851389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021337)	promoter-TSS (NM_021337)	498.0	NM_001045864	27632.0	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	6.3691172237054	6.44944900690089	6.32170525496661	6.34088493074455	6.48871530197395	6.56304053319836	0.13063620486942	0.627374559635346	0.893213626166477
Merged-chr15-97825908-2	chr15	97825408	97826408	+	872.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	5859.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	6.28416040530054	6.30442603417328	6.23800970548744	5.68205291973357	5.69089790517748	5.33407987939247	-1.19848422694038	0.000137213196547523	0.00369729134013158
Merged-chr7-55853011-4	chr7	55852516	55853516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	10945.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.81132709284022	6.48609295351578	6.62699302902279	6.81766767353945	6.91462745452132	6.95657529166842	0.385143917916235	0.139624328114676	0.499301307664228
Merged-chr1-131980382-3	chr1	131979907	131980907	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9798.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.95507054820616	5.0923240958261	5.55683268313452	4.90549254749295	4.7775960698377	5.23851555064722	-0.500849629711815	0.22766470086048	0.622814453879498
Merged-chr2-71390789-2	chr2	71390289	71391289	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	1529.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	5.55596010429819	5.57747178841752	5.37716768381947	5.69809739663428	6.06158329848948	5.59542141790114	0.554599174202048	0.102210406527279	0.426280562694693
Merged-chr3-145750533-4	chr3	145750030	145751030	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-8162.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	3.53333999386643	3.61923004552727	3.92049463153106	3.74408757579079	3.89144520918991	4.07841209704988	0.694486231801254	0.206806838112726	0.597478677326609
Merged-chr1-63115937-2	chr1	63115437	63116437	+	692.599976	f1_balb.idr|f1_c57bl6.idr	intron (NR_045914, intron 1 of 3)	(TTTC)n|Simple_repeat|Simple_repeat	1197.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	3.96117138490448	4.39156956058014	4.45729164900268	4.2948179879972	4.52637709911823	4.30981366565521	0.271221211593677	0.575764580769598	0.87137539535607
Merged-chr11-69680541-2	chr11	69680041	69681041	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163571, exon 2 of 11)	exon (NM_001163571, exon 2 of 11)	1429.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	5.85823748180605	5.70294051740875	5.86615798970309	5.93429636097717	6.24231723089553	6.38294279013889	0.672780399226672	0.0292607912314664	0.205566693413362
Merged-chr14-33057739-4	chr14	33057254	33058254	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 36 of 58)	intron (NM_001146022, intron 36 of 58)	66372.0	NM_026253	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	3.14059291611979	2.67910908614249	2.9548457450473	2.72258885734505	2.91094302766798	2.96814883526165	-0.330936357326627	0.658478026420208	0.905014667687917
Merged-chr16-90810506-4	chr16	90809995	90810995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029497)	promoter-TSS (NM_029497)	-82.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	5.96445279745185	6.12914478475809	5.77566437283972	5.82762204352945	5.72920329462766	5.73095310626784	-0.37480509865955	0.225248172890006	0.620063864646258
Merged-chr16-55832243-4	chr16	55831751	55832751	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	6390.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.37583319411608	2.9813739802074	3.10715473149827	2.87224301981091	3.09684177091664	3.06054041658341	-0.672834379285332	0.333996827687692	0.724748007849347
Merged-chr9-42128190-4	chr9	42127676	42128676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3879.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.04446360558305	3.36402462307079	3.37623377757333	3.4594617746815	3.18922626435063	3.65302354624849	0.666636371841999	0.306865475135231	0.703091920100449
Merged-chr4-32358783-4	chr4	32358254	32359254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58681.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.51118776970517	6.45873974342597	6.03867190531726	4.93116507115438	4.81397486621442	5.04035159866159	-2.74789819603053	4.54864309760618e-15	1.25742024872297e-12
Merged-chr1-60974149-4	chr1	60973651	60974651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3763.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	6.53148393946936	6.54446034139346	6.75471412964471	6.62686658971258	6.62318975915307	6.60781280116411	0.0211672182459361	0.934909640413444	0.985727573165395
Merged-chr9-4319525-4	chr9	4319014	4320014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 2 of 2)	B1F|SINE|Alu	9698.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	5.48056166266056	5.39751249986865	5.1916721475064	5.33163927314041	5.41226983952947	4.9587905510348	-0.210214137964797	0.570127926661087	0.869072933274727
Merged-chr11-69110945-4	chr11	69110529	69111529	+	881.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9424.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	3.87833661118939	3.60637100449284	3.86441463957102	3.89066514393466	3.90989517877549	3.98191164482546	0.444283479778913	0.395225350389047	0.772579826044138
Merged-chr2-155762056-4	chr2	155761543	155762543	+	959.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10826.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	4.97672370749155	5.1844330764286	5.06549333893929	5.68077537404818	5.66342869453078	5.8275399136371	1.24632912705934	0.000268704487675243	0.00637171929623301
Merged-chr2-30266490-4	chr2	30265993	30266993	+	831.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281829)	promoter-TSS (NM_001281829)	-228.0	NM_001281829	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	6.60141435918776	6.62636941493082	6.40656022830791	6.26385980871073	6.38309237386922	5.85060090899544	-0.574845344334271	0.0571970373877829	0.308461409486204
Merged-chr15-58585667-4	chr15	58585144	58586144	+	904.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	170176.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	3.25198302215616	2.93035945578416	2.83215504475335	3.19006679495293	3.00433988129937	3.09441660732734	0.330551928303589	0.641754679068105	0.899171520014446
Merged-chr15-102460243-3	chr15	102459771	102460771	+	732.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025385, intron 3 of 4)	intron (NM_025385, intron 3 of 4)	1101.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	5.61587825843223	5.79643322379363	5.92779258458118	5.95448241283036	5.86367954946646	6.07670109790716	0.323972007412501	0.293794059123181	0.690424156263798
Merged-chr6-120365094-2	chr6	120364601	120365601	+	664.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-732.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	6.14044547768172	5.98566707779192	5.70739484570542	6.09344770095136	6.03407631723073	5.6845189081269	-0.013367790216578	0.967160897571627	0.992479541792373
Merged-chr18-37998689-4	chr18	37998207	37999207	+	928.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001205336, exon 1 of 33)	5' UTR (NM_001205336, exon 1 of 33)	262.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	5.09026755252877	5.64468127330159	5.73248316827703	5.86565761121478	5.39666488677389	5.37515900480507	0.100889470845881	0.796511030096125	0.951430675491237
Merged-chr7-126693433-4	chr7	126692937	126693937	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	B3|SINE|B2	2346.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	2.29595088996376	2.29599867748907	2.64926662835245	2.44845801366205	2.15913122297241	2.14063659853744	-1.06542938766325	0.249238188785763	1
Merged-chr13-58158311-4	chr13	58157826	58158826	+	898.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198004, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	677.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	6.75939721279665	6.62741723697046	6.81740105061582	7.06887119515446	6.9387141896822	6.90492842674314	0.37403686097682	0.1333212601898	0.488425031871102
Merged-chr11-60835342-4	chr11	60834834	60835834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1|LTR|ERVL-MaLR	4703.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	6.96182838332109	6.72702000622957	6.494824220945	6.93940917422222	6.97433488131431	6.68004895554192	0.196036537114809	0.47833571834171	0.823759984020906
Merged-chr4-139236241-4	chr4	139235710	139236710	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	42099.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.1494399152756	5.91975492025137	6.13456248463958	6.25652154102947	6.36184177807258	6.25721865639984	0.384921346291031	0.175418342500272	0.555284540925307
Merged-chr3-101604112-4	chr3	101603620	101604620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	CpG	587.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	8.50066891503664	8.58194655948961	8.22142376591217	8.28226957438385	8.52569322192337	8.51892716096373	-0.00239375144242015	0.991473342460515	0.99826611332009
Merged-chr12-52478610-2	chr12	52478110	52479110	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_136881, intron 2 of 2)	intron (NR_136881, intron 2 of 2)	1999.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	2.87479121495643	2.82772680724006	2.9431461905735	2.85438382327857	2.71650709930224	3.07230439919625	0.00698853355571318	0.99217905762711	0.998427455457837
Merged-chr9-66879035-2	chr9	66878535	66879535	+	662.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	40670.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.49018947549773	7.51782194601695	6.85125963469575	6.72589049688147	6.73882861644933	7.05257800855895	-0.740379472829432	0.011580379007964	0.111503771818022
Merged-chr6-135192089-4	chr6	135191567	135192567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040296, exon 4 of 5)	non-coding (NR_040296, exon 4 of 5)	3587.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	4.48095024048389	4.45363340504432	4.473079215372	4.20779426711555	3.8670697340875	4.23753859546185	-0.997752307492076	0.0354603134800074	0.23116435005049
Merged-chr4-154160789-4	chr4	154160295	154161295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-111.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	6.41590559400015	5.79822822916173	6.64925792615582	6.47424814779561	6.02204805824604	6.08755026456004	-0.197068533845743	0.581731718247963	0.873425292899358
Merged-chr5-41842832-4	chr5	41842273	41843273	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081422, intron 1 of 26)	intron (NM_001081422, intron 1 of 26)	1542.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	3.72679120711785	3.47947995502734	3.53536673522573	3.88079365520229	3.98354110012675	3.60848789944077	0.846476467956285	0.134943918146591	0.490990947514131
Merged-chr1-91187544-4	chr1	91187027	91188027	+	974.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168392, intron 1 of 3)	intron (NM_001168392, intron 1 of 3)	7705.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	5.18338659539839	5.37539311939631	5.48298814271282	5.0070105748755	4.77111353508414	4.9851005006807	-0.900184264930907	0.0155430574365679	0.136080252860052
Merged-chr7-102771170-4	chr7	102770654	102771654	+	863.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3372.0	NM_147092	259096.0	Mm.377839	NM_147092	ENSMUSG00000073966	Olfr561	MOR14-2	olfactory receptor 561	protein-coding	2.334189806291	2.43108697256828	2.54862981532578	2.51765399674842	2.3839033526923	2.2981999719011	-0.208083927155058	0.801939605869513	1
Merged-chr4-145017928-3	chr4	145017419	145018419	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	124782.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.24492072437985	5.49718847919514	5.23849793646552	4.7666800822049	4.46878167786162	4.68243622809645	-1.53616948352038	9.19550487009999e-05	0.0026457108203018
Merged-chr10-80100259-2	chr10	80099759	80100759	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	928.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.47721292804626	4.05587577587956	4.64846055177204	4.86507183772674	4.80629161942074	4.86324800029119	1.05097533173841	0.0198540296144354	0.160623635990077
Merged-chr19-40728919-4	chr19	40728411	40729411	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	69141.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.71592801938436	3.66480863774815	3.42097740034794	3.49373057161361	3.51797916372347	3.49340751658317	-0.398467471108322	0.488944679281065	0.829423271678195
Merged-chr11-101658921-2	chr11	101658421	101659421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6620.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	6.19697846599648	5.82914101677872	5.90315358935148	5.63400907290809	6.31370942561764	6.59596809489385	0.423789857427238	0.252991992952016	0.650389625635366
Merged-chr2-144264943-4	chr2	144264428	144265428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1274.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	6.95161690717407	6.87404520064514	6.90897362398546	7.02297405847423	7.09589068434394	6.80330363956343	0.118026251003001	0.635112959336076	0.896439353901449
Merged-chr5-88558571-2	chr5	88558071	88559071	+	856.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4109.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	4.00249444667191	3.85884975714558	3.92437547281136	3.60202126563066	3.90897546528478	4.33120872333375	0.140016538270161	0.803942267612782	0.953557286986578
Merged-chr18-32809922-2	chr18	32809422	32810422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045381, intron 2 of 4)	intron (NR_045381, intron 2 of 4)	-5461.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	3.14979443759415	3.49116004477773	3.36445242573559	3.11448854494071	3.50150327944034	3.38009584406893	0.0077556865321709	0.99045345361042	0.997888930207971
Merged-chr2-11602115-2	chr2	11601615	11602615	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	1084.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	6.01194547478265	6.55083141004456	6.01820065222624	6.41164936141294	6.75824700726863	6.24027975306705	0.439132646124521	0.185223076008598	0.569424433182717
Merged-chr6-89255186-2	chr6	89254686	89255686	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30539.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	2.97434315908432	3.27881611227778	3.21628485926547	2.81271527939365	2.7843317028971	3.00223254273202	-1.4345934588904	0.0440902355630759	0.264236554359869
Merged-chr19-34605708-2	chr19	34605208	34606208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	2.80127921089912	2.90531117221843	2.97272129581356	3.17113764047369	3.17587407646136	3.38389780353298	1.62291945222504	0.0178026935028235	0.149547565192071
Merged-chr4-3788891-2	chr4	3788391	3789391	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	B2_Mm2|SINE|B2	46764.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.83102791448274	2.92999289995806	3.46053834571168	2.94793468325661	2.98393768454843	3.22466491390493	-0.189131670161617	0.79601514600098	0.951396269938008
Merged-chr5-106696078-4	chr5	106695560	106696560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	CpG	770.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	8.02168608416682	8.01983775060693	7.96242944913287	7.81733027248791	7.67722838629984	7.81340636612198	-0.336297940347686	0.113078595854801	0.44924769881046
Merged-chr8-105996500-4	chr8	105995981	105996981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176913)	promoter-TSS (NM_176913)	-58.0	NM_176913	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	4.76749403528315	4.46752385540042	4.5633471710386	4.18995302056575	4.06703005695276	4.13889740990488	-1.26410228996345	0.00576077214240583	0.0676941573824748
Merged-chr11-3191777-16	chr11	3191252	3192252	+	969.3797609999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	RCHARR1|DNA|hAT-Charlie	1711.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.52673561599473	6.90085463481262	6.79413338101562	6.11726335853045	6.21874685752727	7.05963945493913	-0.343442766282936	0.334621342803265	0.725082622186825
Merged-chr12-17717383-2	chr12	17716846	17717846	+	638.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	26537.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.90599579999318	4.95837744854593	5.39519950418939	5.24692759089352	5.18452373490648	5.3131233767916	0.320493118641734	0.397403177983179	0.774278774758806
Merged-chr3-157535108-4	chr3	157534590	157535590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	925.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	7.59693152561843	7.95433362955496	7.5003147994118	7.75313379802852	8.02370173270098	7.21778361320066	0.0202847880958212	0.945392891204974	0.987907378883357
Merged-chr8-70629208-2	chr8	70628715	70629715	+	646.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001330687)	TTS (NM_001330687)	2880.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	5.01610646682817	5.10572145698094	5.55573996300752	5.49214593575835	5.3768702762372	5.36512102847492	0.359011441119461	0.331292927219172	0.722668404140379
Merged-chr10-34204308-2	chr10	34203808	34204808	+	766.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	3243.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.27218722133011	5.17811239276567	5.25488489900773	5.76156506693341	5.6007323961684	5.79684699938572	0.924689986794749	0.00518390704467958	0.0626860249053478
Merged-chr14-62231233-4	chr14	62230734	62231734	+	911.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61745.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.90033220700597	5.01431344089767	5.30661228367667	5.13689950737767	4.96706264940471	5.63282459603238	0.385933583153143	0.346066921617378	0.734515828466387
Merged-chr12-112675459-4	chr12	112674963	112675963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331107)	promoter-TSS (NM_001331107)	-579.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	4.50206020012902	4.50907689572468	4.76137626807058	4.74709986613781	4.61378441598354	4.59363226298846	0.16264474764856	0.696551360962948	0.919511799366159
Merged-chr7-80454975-4	chr7	80454450	80455450	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007550)	TTS (NM_007550)	-49514.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.74832134793248	4.25158126226043	4.26317049912232	4.04452445445965	3.73741730327243	4.15733042592848	-0.354765144170807	0.515706415942134	0.84387216239357
Merged-chr4-31963140-2	chr4	31962640	31963640	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-967.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	4.87508753711447	5.14470392550724	4.96136930763466	5.25299633968408	5.28319825871933	5.32803238511981	0.586798251042402	0.106040430834449	0.434650845757282
Merged-chr4-152297215-4	chr4	152296714	152297714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037908)	promoter-TSS (NR_037908)	0.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	6.78598139726466	6.61040759118779	6.63059861310095	6.84802092915711	6.20223897048999	6.58895869323925	-0.174985957066844	0.559811424705584	0.86512447604019
Merged-chr10-84398643-3	chr10	84398131	84399131	+	581.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	MTD|LTR|ERVL-MaLR	41840.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.35465745896942	3.04961376825925	3.39934721141828	3.13010379287283	2.99177402777132	3.13716052605365	-0.809931057088089	0.22111073509038	0.615621501204726
Merged-chr8-123022896-3	chr8	123022397	123023397	+	633.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	19387.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.66808708235951	3.85225455489295	3.86747540203714	3.70988627248762	3.8952383438754	4.16348754731098	0.414294983478943	0.439939029223293	0.801507416877119
Merged-chr10-57791543-4	chr10	57791026	57792026	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.69022404344828	5.87360739971276	6.1129376646824	5.79653728659761	5.64606158382766	6.28685653993011	0.0537013999914401	0.877866046848842	0.971748379457442
Merged-chr11-83705436-4	chr11	83704937	83705937	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081957, intron 2 of 2)	intron (NM_001081957, intron 2 of 2)	1381.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	6.61626986860786	6.84050708240212	6.85999526769001	6.76849238841299	6.88892063422625	6.90408269821043	0.126252402162917	0.619611715852555	0.889868376148509
Merged-chr5-146770361-4	chr5	146769872	146770872	+	859.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	24584.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.87358490659739	5.03795092087856	5.41300317005391	5.56955782684647	5.47976810318239	5.44708103799831	0.774842149699165	0.0348818755314222	0.22904432914833
Merged-chr1-64928104-4	chr1	64927611	64928611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	LTR79|LTR|ERVL	28713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	7.4847918392995	7.8302984240099	7.72852865839678	7.79429238991561	8.03178186139208	7.59039938858404	0.196903669776672	0.429002402462971	0.795570481157701
Merged-chr17-50510656-6	chr17	50510236	50511236	+	978.8412480000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	1189.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.67794453094713	7.02174307885984	6.6146750658521	6.91475067162946	7.07201838625045	6.91095257544974	0.275332872101718	0.303631548430035	0.700140609166312
Merged-chr11-61468053-2	chr11	61467553	61468553	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-14061.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	5.0029309466589	4.81351781647599	4.82975585247146	4.74476196646638	4.78497586063332	4.57022450548608	-0.402671905923694	0.314327865277744	0.708700303644741
Merged-chr15-58682213-3	chr15	58681715	58682715	+	796.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	141212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	2.73750568632335	2.53926325894763	2.54196386058701	2.60442586964776	2.49629423141756	2.85815293512226	0.250431657251082	0.751284231441025	1
Merged-chr3-28005122-2	chr3	28004622	28005622	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	20951.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.34867809487645	3.43700856133181	3.71896280977882	3.43259203279268	3.47813096740413	3.73936669655208	0.172268575186267	0.771863899360798	0.943656352306983
Merged-chr13-9873625-4	chr13	9873130	9874130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108309.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.99661386117681	6.84901142133844	6.7902860186767	7.05435511532869	6.76870821244336	6.93672525945104	0.0552635696831406	0.828594012394558	0.959833682782168
Merged-chr13-44484512-4	chr13	44484017	44485017	+	939.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44790.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.62241430630355	4.41422921096041	4.53770268416608	5.42638683462692	5.71420678610684	5.50022159226702	2.21911711277741	1.09386696445037e-08	9.83983593275533e-07
Merged-chr7-19269796-5	chr7	19269184	19270184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	2170.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	6.67624321288013	6.66592953774753	7.12434631370119	6.95819473423866	6.9404530828073	7.44592829338954	0.455470616423718	0.1225503273154	0.468340037443615
Merged-chr17-69143227-4	chr17	69142737	69143737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-13507.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	6.23145984908904	6.36166641465501	6.30897155296221	6.39433818629111	6.55645892838126	6.22531502320971	0.177842350539747	0.524338025758831	0.848650426908011
Merged-chr16-30775517-6	chr16	30775042	30776042	+	873.8352050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175819.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.86218163926493	6.54299550011473	6.45597124728387	6.83657786822587	7.14075208830954	6.93991177125802	0.532439029609783	0.0532875032332917	0.295991930878587
Merged-chr19-37137357-4	chr19	37136877	37137877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290829, intron 3 of 9)	intron (NM_001290829, intron 3 of 9)	-36466.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	5.96086255959538	5.9477127253857	5.78643130466174	5.87608687722113	5.74205168793095	5.65899157409371	-0.252519879211288	0.409136094082057	0.782552838111849
Merged-chr9-110449060-4	chr9	110448547	110449547	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 3 of 9)	intron (NM_001360306, intron 3 of 9)	27647.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	3.99957200553298	3.76253325218805	3.87131318335344	4.15876308973997	3.9249743846868	3.89000335438707	0.352718076512763	0.492890971553019	0.831208279358962
Merged-chr16-76363960-4	chr16	76363562	76364562	+	936.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	RLTR15|LTR|ERVK	8987.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.29458249360983	6.33765329470357	6.08896277069985	6.7078918289774	6.93791531505932	6.59287852554551	0.818765062268488	0.00332646975244312	0.045464667404942
Merged-chr8-70697279-2	chr8	70696779	70697779	+	800.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010592)	promoter-TSS (NM_010592)	-460.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	5.80158725994648	5.34229498219569	5.64514194727415	5.58904283924158	5.67593970712147	5.51060450326527	-0.0188909340034234	0.955810760704404	0.989783387008628
Merged-chr11-114980353-2	chr11	114979854	114980854	+	570.0	f0_balb.idr|f1_balb.idr	Intergenic	RLTR44C|LTR|ERVK	9532.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	3.59402628038425	3.55977890489937	3.55046407874902	2.98069259792205	2.89279028045202	3.23651151831235	-2.42099192283414	0.000521438780630306	0.0108253188769178
Merged-chr14-25467846-4	chr14	25467327	25468327	+	871.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	8642.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.86059899559333	4.51125084045797	4.32845038981771	4.30223920307921	4.15860190831704	4.15335077920832	-1.00387005270007	0.0331707635529994	0.22217442596136
Merged-chr2-34772550-4	chr2	34772029	34773029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163434, intron 2 of 8)	CpG	439.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	8.18640717275715	7.95669412716044	7.8539832185633	8.03371849133131	8.12854728393752	8.02712587906531	0.0769846620403132	0.72870080657552	0.930478966998914
Merged-chr8-72294855-2	chr8	72294355	72295355	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24207.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.24701102714809	6.14504776811905	6.04290240879593	5.79992421369957	6.10013188933054	5.8101704730791	-0.394747083916868	0.193756153026331	0.581033530782477
Merged-chr2-128813519-2	chr2	128813019	128814019	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4784.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.3372360968507	3.17235262041929	3.25075522446588	3.22336510323594	2.94760267719977	3.20814174781454	-0.549229532263244	0.399980307077798	0.776300648239631
Merged-chr11-75255533-4	chr11	75255035	75256035	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	61542.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	6.05702916706583	6.28035441424899	6.1263650279216	6.1030044540288	6.66090008192455	6.33184986912908	0.391191527960985	0.204993289154882	0.595693287839612
Merged-chr10-121591712-2	chr10	121591212	121592212	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 24 of 24)	intron (NM_001359618, intron 24 of 24)	-4918.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.1359204720462	5.00933305252337	5.34112223300973	6.8440599266108	7.11489314836568	6.3262920091846	2.91530609453021	3.71228580722191e-17	1.55222048968503e-14
Merged-chr15-67175800-8	chr15	67175253	67176253	+	897.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	1129.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	5.88789613509192	6.02358236529055	6.12927209129266	6.19455502552492	6.10457926213736	6.38164861034515	0.363813566218917	0.214186638770579	0.607411938158068
Merged-chr11-21224614-4	chr11	21224111	21225111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14421.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	7.16350432706385	7.43496941420356	6.89666653366374	7.13275569424905	7.67805697369134	7.28738424742061	0.299835125047654	0.297654294814524	0.694420976922752
Merged-chr11-69924270-2	chr11	69923770	69924770	+	973.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2312.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	2.93992158936205	2.69089906263481	2.96286285995809	2.40363121016723	2.68996522117254	2.54328417050144	-1.74231396218099	0.0420493236195468	0.256795605118184
Merged-chr10-70097657-2	chr10	70097157	70098157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 1 of 8)	CpG	536.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	4.6508744334173	4.61397157116145	4.89655989366058	4.79129789810005	4.81884176447985	4.925990656476	0.291331432064476	0.464763573435275	0.816537814201608
Merged-chr2-84252275-4	chr2	84251773	84252773	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172993.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.56480269695764	3.13961244520832	3.25346777561624	3.37444456914151	3.3687097748512	3.32625622670283	0.0818492383997284	0.897112905968761	0.975955240159241
Merged-chr1-30951865-2	chr1	30951365	30952365	+	782.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2110.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	2.45812610703832	2.35409383001092	2.20051858427583	2.50484797945161	2.28241744060002	2.60744559267275	0.773453429124467	0.378471173091252	1
Merged-chr1-85794524-6	chr1	85794022	85795022	+	682.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355047, intron 1 of 9)	intron (NM_001355047, intron 1 of 9)	505.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	6.70424925378176	7.31715674376354	7.00796202510695	6.73569869413963	6.76835068167425	6.78085775466975	-0.426717280416716	0.129741818827655	0.481815462867602
Merged-chr17-29478495-4	chr17	29478011	29479011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-12534.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.99709885361288	5.80296835749154	5.92081000705023	6.10910327463851	6.16933159233737	6.05195128263726	0.357973246339833	0.219342039461041	0.613520643565823
Merged-chr2-167347580-2	chr2	167347080	167348080	+	844.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1598.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.3792266994521	3.65584721439241	3.1747305179142	3.37848324581043	3.3003728340319	3.48317469502816	-0.154439270234429	0.807374026783289	0.954557080558103
Merged-chr9-66894248-3	chr9	66893752	66894752	+	672.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	25453.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.36334180475521	6.41427415732858	6.28352944917706	5.94247248373563	6.24695099694362	6.20116855807638	-0.365016718704904	0.200810491880584	0.590111109711357
Merged-chr10-68075522-3	chr10	68075058	68076058	+	884.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	95988.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.17899854432943	4.01195976075182	4.43826619422523	3.65282205551941	3.27167859529533	3.52047920842032	-2.49987163870725	3.81655387572061e-05	0.00126119068662018
Merged-chr19-7494906-1	chr19	7494406	7495406	+	1000.0	f0_c57.idr	intron (NM_146091, intron 1 of 12)	CpG	468.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	8.39771281274199	8.81087071259124	8.51044788135043	8.38317796003865	8.6397901410284	8.53401748591329	-0.0875580443412887	0.701240787650657	0.921225520800058
Merged-chr16-70415465-2	chr16	70414965	70415965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	101516.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.27462284644828	3.30478395607478	3.54851772864321	3.43743154898292	3.43321523273113	3.23217169283484	0.00392093103208337	0.994900864004026	0.998961028701257
Merged-chr1-60804208-3	chr1	60803646	60804646	+	835.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	57758.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	3.8504158509616	4.14775019887719	4.07163858365011	3.73038886032897	3.99013809781673	4.2700639853001	-0.0588467994172786	0.911623455307472	0.980154516820379
Merged-chr7-28960175-2	chr7	28959675	28960675	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	2157.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	2.191808152529	2.40646450736726	2.40349002874775	2.28522527876528	2.064751805757	2.14705249475283	-1.20550497683093	0.185604216208486	1
Merged-chr11-121237632-2	chr11	121237132	121238132	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026272, intron 1 of 10)	intron (NM_026272, intron 1 of 10)	396.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	6.15725408632966	6.05397725090263	6.12324902459414	6.24586012117629	6.29599363940145	6.04939842876274	0.167439450071974	0.556216598985152	0.86357390983939
Merged-chr12-8260468-3	chr12	8259971	8260971	+	975.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172401, intron 4 of 6)	intron (NM_172401, intron 4 of 6)	41483.0	NM_001312876	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	3.76111958284132	3.90479235244574	3.63016037643883	3.63711272909238	3.63122518113743	3.95348927143886	-0.115557362920943	0.834299580541279	0.961273502395445
Merged-chr15-83128930-3	chr15	83128397	83129397	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-6096.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	6.60163958116001	6.43788355711033	6.21586832478853	6.6106496616177	6.83592662904462	6.40182041942285	0.324123619095343	0.264839115364821	0.662699098164859
Merged-chr15-74923617-4	chr15	74923110	74924110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31441.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.15450523287718	6.09371712630012	6.27191730266549	7.01699078522785	7.25080085651849	6.52970081555548	1.28800413119655	1.87546929980966e-05	0.000691116251100806
Merged-chr11-98949833-4	chr11	98949334	98950334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177302, intron 2 of 9)	intron (NM_001177302, intron 2 of 9)	10123.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.89538069429293	6.43081477045518	6.4415349770144	6.8505886449459	7.02719609621689	6.62962567523349	0.373842502556927	0.202894689110166	0.592772302593993
Merged-chr5-95924714-4	chr5	95924189	95925189	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32250.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.5644245594948	4.64386407566382	4.77922955096403	4.62884221979717	4.27251792773954	4.65692491635006	-0.34076213024632	0.43446786863246	0.798410009305253
Merged-chr17-72916015-2	chr17	72915518	72916518	+	883.416626	f0_balb.idr|f1_balb.idr	Intergenic	MIRc|SINE|MIR	-2287.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.45442886834569	3.21283439559041	3.35018278132932	2.99552770036305	3.09427705354772	3.36678915206001	-0.779470981690416	0.233817295900685	0.630121355137759
Merged-chr9-118693058-2	chr9	118692558	118693558	+	997.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	LTR50|LTR|ERVL	-18634.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.9038956635937	2.89176719603301	3.26651902617054	2.99865512512261	2.86533934142089	3.12042711219628	-0.141495339172872	0.839723983113726	0.962784121274377
Merged-chr6-99664006-2	chr6	99663506	99664506	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	2765.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	2.48518185969651	2.48386888437156	2.48270109643969	2.59363445025991	2.57639257221159	2.74438437067978	0.892414302487902	0.249913659097123	1
Merged-chr18-39553243-8	chr18	39552738	39553738	+	953.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65993.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.17669349645746	5.1892171106784	5.39970129634964	4.98341701975901	5.24226537645923	5.08737046907018	-0.279940350551456	0.442419584682816	0.803210813434975
Merged-chr8-109692415-2	chr8	109691915	109692915	+	655.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_155034, intron 1 of 10)	intron (NR_155034, intron 1 of 10)	879.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	7.29113875943729	7.2886924746118	7.00594849330453	7.23966798705032	7.52374779305435	6.88650331825226	0.0715501836366668	0.797613839298149	0.951799370596145
Merged-chr2-73891742-2	chr2	73891242	73892242	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025093, intron 1 of 14)	intron (NM_001025093, intron 1 of 14)	897.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	4.60229233679348	4.60121901388833	4.36016068153007	4.48020991199112	4.04384308273086	4.51470752426959	-0.454575260384678	0.33373015699058	0.724581896487186
Merged-chr18-90508519-4	chr18	90508020	90509020	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP1-MM_LTR|LTR|ERVK	-1634.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	3.68998417199898	4.12480346106112	3.71654892028935	3.49178431910755	3.69413626125312	3.62418693656818	-0.851071316478555	0.138544946921418	0.497422602222815
Merged-chr6-37262705-4	chr6	37262240	37263240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	37236.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	2.94827797864183	3.09662339569042	3.05556511133786	3.00756273249061	2.87761501512368	3.12739753211648	-0.151880202811092	0.821890706702099	0.958023303204974
Merged-chr15-27628033-4	chr15	27627542	27628542	+	991.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	2651.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	4.1408562192967	3.84808276929994	3.80897328182865	4.31140534560741	3.59908749783129	3.82683785639211	0.0186563706403538	0.974403294475814	0.994276686350905
Merged-chr2-113327692-4	chr2	113327215	113328215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285458)	promoter-TSS (NM_001285458)	-21.0	NM_001285458	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.25976976830333	4.48505152160107	4.01979900986831	3.97852481576344	3.97932055906976	4.13926725710312	-0.703736264320234	0.155410717469018	0.52509823972611
Merged-chr7-5100500-2	chr7	5099989	5100989	+	854.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16422.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	4.08451261059178	4.24447808307554	4.45403606137848	4.22297043402432	4.19332987146175	4.35603660911594	-0.0181358558649099	0.969092218314216	0.992971360861616
Merged-chr18-5100560-1	chr18	5100060	5101060	+	566.0	f1_balb.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	53971.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	5.26880684796362	4.98459037257675	5.57544400338991	4.71572038211023	4.06857520622981	4.76035810636033	-1.67049941004216	0.000475141856421902	0.0100984938925041
Merged-chr3-153293060-1	chr3	153292560	153293560	+	804.200012	f0_balb.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	5589.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	2.55959009007619	2.6182405555137	2.78209034436293	2.53892636372226	2.26692460039094	2.91210830099333	-0.289682707160907	0.741411718445596	0.934810423981747
Merged-chr5-98030528-4	chr5	98030038	98031038	+	859.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133738, exon 1 of 17)	exon (NM_133738, exon 1 of 17)	424.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	4.60841420510685	4.57794857072635	4.15126393677429	4.04368403758052	3.65202332255738	4.1233388923439	-1.47787335136068	0.00500659287533671	0.0612739965199279
Merged-chr3-51654557-3	chr3	51654085	51655085	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6594.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	2.10641331823888	2.17167941168901	2.2784812182844	2.00715385992128	1.90600953996029	2.15962939660893	-1.28151378326196	0.178511992125458	1
Merged-chr2-167776270-6	chr2	167775762	167776762	+	929.711121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85085.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.39576608217884	8.07885155722069	8.25900062035944	8.26401943459392	8.00482818138454	8.00144439438387	-0.217841100709567	0.338054630100257	0.728000347830431
Merged-chr6-83677854-4	chr6	83677364	83678364	+	881.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144943)	promoter-TSS (NM_144943)	-7.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.55103612684487	4.62826370673845	4.85544175912115	4.43268909648391	4.73115613454003	5.08250212499036	0.208423407199029	0.638277831969037	0.897407473025053
Merged-chr10-62553693-4	chr10	62553154	62554154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24803.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	6.21827848349509	6.23290981862754	6.05834308330914	6.27040094621508	5.75397306717271	5.52626516306636	-0.47885621008957	0.163617917717383	0.537647883161994
Merged-chr4-126198382-1	chr4	126197882	126198882	+	557.0	f1_balb.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	2625.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.39066514628895	4.38984832107217	4.49826655085687	4.72232696115426	4.85925822275823	4.60788241482975	0.777728224168069	0.0628120827876364	0.32594124007444
Merged-chr4-133874702-4	chr4	133874204	133875204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	27.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.91171647090066	6.97185620406407	6.99390330006551	6.42664252542704	6.34811488789074	6.42873525147762	-0.885055485504975	0.000456230081816592	0.00977897801334235
Merged-chr2-155297752-2	chr2	155297252	155298252	+	626.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004721, intron 9 of 11)	intron (NM_001004721, intron 9 of 11)	21388.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	4.26707853265066	4.10830064806362	3.70027558824288	3.79483555873367	3.84368967287281	3.8289740885489	-0.709311649633246	0.190739914199823	0.577277371721487
Merged-chr3-101605300-2	chr3	101604800	101605800	+	620.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	-593.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	5.3858469193397	5.44093388910427	5.52508193792133	5.19772708442658	5.570498185639	5.35232403781605	-0.107637902650853	0.756425595110112	0.939609185768999
Merged-chr4-155706353-2	chr4	155705853	155706853	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	B1_Mus1|SINE|Alu	1538.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	6.35490204266104	6.5809911351754	6.15883129217829	6.275508869149	6.53116647845311	6.40416432943191	0.0402893948944016	0.889370811639173	0.974240173857916
Merged-chr5-31197703-2	chr5	31197203	31198203	+	752.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153680, exon 11 of 15)	exon (NM_153680, exon 11 of 15)	4339.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	4.23449238057245	4.15618858625424	4.87418259505069	4.50530695174315	4.56006446209188	4.80361214710104	0.425704130929934	0.384991598140189	0.766097833266743
Merged-chr7-99962482-2	chr7	99961982	99962982	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17976.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	7.03096281233737	6.80973696648365	6.93929484789916	6.61721916746674	6.96658198732958	6.89976331895751	-0.138874958299179	0.596149316400221	0.8798867145239
Merged-chr1-85595326-1	chr1	85594826	85595826	+	943.599976	f1_balb.idr	intron (NM_030194, intron 2 of 11)	intron (NM_030194, intron 2 of 11)	3484.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	3.41840783196514	3.22664285768252	3.36038571438486	2.89148982374292	2.6122959352365	3.21301240887937	-1.69647562632456	0.199786501333171	0.588391859375305
Merged-chr19-9954657-4	chr19	9954138	9955138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25962.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.86700221747437	8.05817805046945	7.7797861315037	7.75505404577098	7.99292671966094	7.64642677289883	-0.139745776043629	0.552901108661259	0.861983853430146
Merged-chr9-44268650-4	chr9	44268131	44269131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-32.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	6.19700680114335	5.94664177130578	6.14373695926877	6.13068762178575	5.7562118316133	6.1833690948635	-0.123616359649479	0.692261074493119	0.918622600591208
Merged-chr6-90597182-2	chr6	90596682	90597682	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7698.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	3.77745516584086	3.65921005671969	3.86413356192321	3.85608477526648	3.9440938426802	4.02823138258601	0.563945824733255	0.274706406155518	0.672147114659483
Merged-chr11-67048025-2	chr11	67047525	67048525	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025510, intron 2 of 4)	RMER6B|LTR|ERVK	4593.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	4.43561619689036	4.52617553470317	4.2047225943072	4.44712980407994	4.29017384938356	4.12475559582167	-0.277526732474699	0.55150872414431	0.861262369052689
Merged-chr7-45813966-4	chr7	45813465	45814465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011181, intron 1 of 11)	CpG	351.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	7.11893782542303	7.01706147193306	7.02110344089045	7.10165836056697	6.74624902722369	6.94270719537298	-0.18354862737426	0.468554796439806	0.818673566064062
Merged-chr16-94559499-3	chr16	94558964	94559964	+	745.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10742.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.0723151586468	5.19910281878083	5.06272074909611	5.51020699226444	5.31736861355461	5.36017987529798	0.564332774508651	0.106947283633979	0.436454439973323
Merged-chr4-63549690-2	chr4	63549190	63550190	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	4925.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	2.99074761334676	3.00792636987345	3.07664368401695	3.08470621094943	3.22941548667834	3.31532521097626	0.835731710684729	0.1987436798461	0.587160948993809
Merged-chr9-65539619-2	chr9	65539119	65540119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	40468.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.29460193701088	4.98742821205984	4.99147429887258	5.27980677656202	5.27883576153516	5.32680653005917	0.383328219276778	0.290442637178036	0.688228704380181
Merged-chr12-102396527-2	chr12	102396027	102397027	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 11 of 13)	intron (NM_011175, intron 11 of 13)	43286.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.79704311337935	4.73282503538299	5.21583860747946	4.82738393857176	4.58146568782421	4.92963551787346	-0.320164758357266	0.447404662658655	0.806404141026781
Merged-chr15-99702098-4	chr15	99701595	99702595	+	997.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031842)	promoter-TSS (NM_031842)	-192.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	6.34902537422602	6.42185560149798	6.47324304344663	6.38320281394705	6.29839832540647	6.15879003187672	-0.204141318497344	0.454639402216064	0.810521063822265
Merged-chr2-75706145-2	chr2	75705645	75706645	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1482.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.44408081449968	6.310788791764	6.26814180387747	7.00078686958171	7.24915904038514	6.91710729931022	1.13638894411525	1.89694192656965e-05	0.000697792855110554
Merged-chr15-100728136-2	chr15	100727636	100728636	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	1240.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	5.73057039408751	5.4880698451104	5.20017289705857	5.31001962298347	5.21482839502938	5.29888844711451	-0.450970217812468	0.208699884589469	0.599699554405517
Merged-chr3-106556054-4	chr3	106555554	106556554	+	772.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025582, intron 3 of 6)	ORR1G|LTR|ERVL-MaLR	-8252.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	5.65548831137885	5.92980836958271	6.0249814148545	5.70390079837751	5.80592442122437	5.95289459517097	-0.0945163964474091	0.765314118624698	0.942137701159565
Merged-chr3-30855962-8	chr3	30855547	30856547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	97.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	7.60074138415648	7.81957552280496	7.21550873234398	7.0713239957578	7.38275202290351	6.86558486299268	-0.651927017352053	0.0234320758170666	0.179385055164825
Merged-chr14-73139953-4	chr14	73139449	73140449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2561.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.62044159185879	8.08401917789046	7.69529671247831	7.78721368246798	8.05074987303346	7.5795818156784	0.00972376583598204	0.970534996878643	0.993498134685548
Merged-chr1-85901722-2	chr1	85901222	85902222	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	7212.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	3.20244752074242	3.38991184876615	3.61582720398798	3.60759120292604	3.62479857132472	3.29731103350893	0.429709267556676	0.490157951603793	0.830031090218234
Merged-chr4-116655777-4	chr4	116655267	116656267	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4093.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	8.10731696442955	8.26966735911444	7.83690795592086	8.19507687651349	8.59317630654846	7.8139292708637	0.227058204672145	0.418143087372318	0.788473936634102
Merged-chr18-20714029-4	chr18	20713514	20714514	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32390.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	4.77871243290872	4.62879513301449	5.01514103022581	4.92804474570606	4.5804832748046	4.94436364900472	0.0265341752068373	0.949371574104499	0.988193302227622
Merged-chr1-161512372-4	chr1	161511877	161512877	+	886.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	17720.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.538279420512	4.37531809305826	4.30433204275144	4.41299634697415	4.49929858650786	4.37285979799601	0.0484637522681487	0.912215088207245	0.980305193163948
Merged-chr8-83750733-2	chr8	83750239	83751239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9428.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.04479538717056	4.05777080105938	4.14632566526039	3.4434625770032	3.55902070427848	3.94256585394057	-1.37787606822161	0.0139339858152141	0.126356190143687
Merged-chr10-22166212-4	chr10	22165725	22166725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	-7272.0	NM_198193	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	5.18179387100849	5.01965658038679	5.02918232102538	4.53679154799507	5.10054454369619	4.48426698017594	-0.70066113451639	0.116097190214625	0.455026613442228
Merged-chr6-137409617-2	chr6	137409117	137410117	+	999.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-1104.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.36713358531295	4.15918651508797	4.3494998632922	4.10428121329848	4.15539551617304	4.57504864551158	-0.0226613695512587	0.962389537137526	0.990854599110746
Merged-chr8-106157492-2	chr8	106156992	106157992	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	7138.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	3.510508192193	3.39286336871605	3.62364152852879	3.98457835628679	3.57508257399572	3.94341062205599	1.14019181737005	0.0473878281651668	0.275698951612865
Merged-chr4-108281686-2	chr4	108281186	108282186	+	666.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	19404.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	3.82627793691557	3.88182739451421	3.99423066913724	3.72990511426097	3.50770938705387	3.71979996918708	-0.825264889622013	0.125699602657028	0.474303730198928
Merged-chr11-70668905-4	chr11	70668402	70669402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178116)	TTS (NM_178116)	514.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	7.10829986267519	6.81837249003275	7.11168462024329	6.90222367197878	7.30310931758221	6.9585153512406	0.0907348883365932	0.735758400155195	0.932876984123876
Merged-chr3-136834057-4	chr3	136833571	136834571	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	164005.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	2.90255191851875	2.85390812977278	2.81618642950677	2.85091434085012	2.77034368930093	3.0666509527129	0.175582032633805	0.804083539615783	0.953557286986578
Merged-chr7-43578472-2	chr7	43577972	43578972	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1114.0	NM_172482	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	2.92528326804222	2.88014507092219	2.77537135343868	2.89416913033207	3.19477060372513	3.26558847072109	1.21320407594736	0.0891929666189654	0.396745242099106
Merged-chr1-16106520-3	chr1	16106008	16107008	+	824.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133832, intron 1 of 5)	intron (NM_133832, intron 1 of 5)	626.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	4.89503938337773	4.91515793967189	4.97592864968576	4.41877069412523	4.22176238728838	4.72010081238239	-1.13402266953258	0.008372078298515	0.0889004455159311
Merged-chr4-141302059-3	chr4	141301491	141302491	+	720.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010139, intron 1 of 16)	intron (NM_010139, intron 1 of 16)	770.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	3.76146581595404	3.54156516246436	3.83351983515811	3.92929141917283	3.36436681381825	3.64688704099273	-0.161597700757811	0.786090811598006	0.948328248031068
Merged-chr13-54589022-2	chr13	54588522	54589522	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178605, intron 2 of 4)	intron (NM_178605, intron 2 of 4)	1052.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	3.31613093522703	3.31030954598917	3.34428160548019	3.3519705580217	3.28387761012306	3.24356809465052	-0.110640065272588	0.854683709440871	0.965987623019113
Merged-chr5-34169505-4	chr5	34168964	34169964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289804)	promoter-TSS (NM_001289804)	-40.0	NM_146159	231123.0	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	6.8808199734609	7.08822401712474	7.34671466362166	7.53318064180977	7.70195166476499	7.32690585245998	0.630202876355543	0.0158195893501969	0.137877489331851
Merged-chr5-150597767-2	chr5	150597267	150598267	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3242.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	4.76271903568618	5.17769554362114	4.97310277026472	5.13449061608473	5.18049599145623	4.96495651575427	0.248211872704093	0.521660720526848	0.847183372504239
Merged-chr4-75318337-3	chr4	75317844	75318844	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-40052.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.23238634463971	2.86936028391863	3.43214070346248	3.19696450691419	3.07824004027454	3.1187913620038	-0.262531879063024	0.704775412641435	0.922525406447857
Merged-chr2-167691549-4	chr2	167691036	167692036	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	359.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.87011972667161	8.31858513191778	8.32780076856494	8.01176988242087	8.30173856800726	8.26424161477341	0.0163286831153179	0.946773861810255	0.988007649185823
Merged-chr8-46497101-3	chr8	46496611	46497611	+	884.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6145.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	4.92711279025138	4.82352619779074	4.4594800375649	4.90174729371005	4.77729497295558	4.4820545472177	-0.0525447873468513	0.904423006260131	0.978131323042371
Merged-chr19-23135053-4	chr19	23134540	23135540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6186.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	7.86671294906336	8.17649029816424	7.72909943999054	7.99980081203947	8.06909204161716	8.10061536884345	0.157833621211745	0.499702638746073	0.834687375989398
Merged-chr11-72690362-3	chr11	72689861	72690861	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009671, intron 1 of 24)	intron (NM_009671, intron 1 of 24)	359.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	7.27589576548787	7.288059350049	7.1934161114098	7.19672514677875	7.31812100485416	7.09984483009739	-0.0615174974726891	0.793309268850587	0.950326484919661
Merged-chr8-26961910-4	chr8	26961391	26962391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15445.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.85015048395631	5.8818255543998	5.956961914612	5.38188007481594	5.21049702406927	5.391166921058	-1.07329567413328	0.000837474012766427	0.0156770613395431
Merged-chr7-92741566-4	chr7	92741066	92742066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029494)	promoter-TSS (NM_029494)	-107.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	7.89366222691673	8.37871139377938	7.69939648557066	8.03715491262807	8.23681786168695	7.65964883111931	-0.0344838128838324	0.904418964882586	0.978131323042371
Merged-chr13-48965777-4	chr13	48965294	48966294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	2034.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	6.40164080078269	6.6530702131267	6.68805907360422	6.57981171199572	7.01060563813375	6.96340731856807	0.444893519703836	0.111776932537211	0.446485286474784
Merged-chr3-121291069-1	chr3	121290569	121291569	+	605.0	f1_c57bl6.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-671.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	6.93504219710294	6.8618319319348	6.77536845738389	6.65460265172112	7.13507782691799	6.80309075249594	0.0438134320736301	0.872136902761063	0.970261003150518
Merged-chr13-49207075-2	chr13	49206575	49207575	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 2 of 5)	MTC|LTR|ERVL-MaLR	8951.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	3.49619505797839	3.49794651022892	3.39782245642242	3.36454981503669	3.26537697289824	3.23686359171061	-0.696665283716349	0.246606723570369	0.643759270156384
Merged-chr2-27761929-4	chr2	27761411	27762411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	51328.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.06185393858007	7.50559560091504	7.19259266627328	7.14316489230942	7.33010497201846	7.12533823706209	-0.0955654687442913	0.712143463210434	0.924950569536929
Merged-chr17-17600176-4	chr17	17599668	17600668	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	24321.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.0496058835293	6.48970233130754	5.99914087821266	6.75944373485935	6.92770201959018	6.54592538119222	0.885019774960601	0.00383816748587262	0.0503994755613996
Merged-chr6-118479395-5	chr6	118478844	118479844	+	796.26001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011763)	promoter-TSS (NM_011763)	-71.0	NM_011763	22750.0	Mm.106970	NM_011763	ENSMUSG00000072623	Zfp9	1810048F22Rik|AU016736|Krox-4|Zfp-9|mszf79-2	zinc finger protein 9	protein-coding	3.74906425579299	3.48456929746295	3.46352310533556	2.93765167411562	2.74243854656898	3.13028718618637	-3.19172355583714	6.34652829024835e-05	0.0019343660292124
Merged-chr8-56295312-4	chr8	56294817	56295817	+	810.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	765.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.5855098001331	6.65188054931295	6.5121102925312	6.67550667969111	7.20677804257004	6.85010967762755	0.549513692717154	0.0499552907512233	0.284528703732479
Merged-chr12-12286804-2	chr12	12286304	12287304	+	838.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	24665.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.53693889409116	5.58975460166877	5.6958711141741	5.90008359900375	5.84306472095505	5.93001719868661	0.517672235226568	0.090893975876053	0.401268354451115
Merged-chr11-35770852-2	chr11	35770352	35771352	+	741.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145962, intron 1 of 6)	intron (NM_145962, intron 1 of 6)	1357.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	4.35660281485021	4.4179667973426	4.30014804598527	4.76078350793043	4.63536899523424	4.8927929968987	0.968686854623499	0.0231040507568449	0.177691270484846
Merged-chr13-52581096-5	chr13	52580610	52581610	+	830.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2327.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.95543793591909	5.17864260798385	5.27512337745494	5.24211886074317	4.84260234929096	5.45229127056453	0.107639256815753	0.787050682854613	0.948693859994902
Merged-chr11-75621587-2	chr11	75621087	75622087	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-9433.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	2.93504148890886	3.09955622984212	3.22667705046955	3.02024675627324	3.08080304142668	3.18689095271761	0.0331170484400657	0.960080596648756	0.990335445597503
Merged-chr11-100930176-2	chr11	100929676	100930676	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_213660, intron 1 of 23)	Charlie1|DNA|hAT-Charlie	9364.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	4.8072234899906	4.24133915417251	4.38012078831268	4.94923033596741	5.17380660218724	5.05384018382358	1.26495981111074	0.00447057526278054	0.0566235429308639
Merged-chr13-20468841-2	chr13	20468341	20469341	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 16 of 21)	intron (NM_080288, intron 16 of 21)	-4149.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.39328521994447	2.5786367898229	2.50251349893276	2.33367812253453	2.12440595384223	2.24737825672432	-1.83566277082978	0.0432223091531629	1
Merged-chr5-125344922-2	chr5	125344422	125345422	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3828.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	3.04529279190059	2.90375283346234	3.00386695569503	3.3091236173313	3.11365496173501	3.25376033970487	1.06968016328009	0.105541542910993	0.433651445056324
Merged-chr12-85486139-4	chr12	85485650	85486650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.40016875968586	7.25994676847967	6.72437461999018	7.15621126370269	7.20895037057397	7.16274632777895	0.00672369832798683	0.98071079984502	0.995560772285461
Merged-chr2-129320175-4	chr2	129319672	129320672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10200.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.54066596651286	6.33094384074072	6.2462714445121	6.08323030001394	6.28484541570636	5.99270217510439	-0.411494032624947	0.159127581430304	0.531158781765317
Merged-chr11-79521641-2	chr11	79521141	79522141	+	777.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2121.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	6.1954980618954	6.19932625909775	5.91174366126396	6.452977624687	6.86304544213359	6.31977612181887	0.756329580832897	0.0143296238704522	0.128758765527915
Merged-chr3-132071073-1	chr3	132070573	132071573	+	609.0	f0_balb.idr	Intergenic	B3|SINE|B2	-14219.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.17662102163567	2.2475212332333	2.45115217806788	2.1712081273744	2.0795494101393	2.27334759077447	-0.84623521579168	0.340738966253451	1
Merged-chr4-115830727-4	chr4	115830235	115831235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	2643.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	5.40101484529449	5.39432634556225	5.67284684303036	5.535806787338	5.77118485167142	5.80880809575586	0.420442745961109	0.203775489550251	0.594000733385788
Merged-chr4-83323776-1	chr4	83323276	83324276	+	1000.0	f0_balb.idr	intron (NM_027238, intron 1 of 19)	CpG	413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	7.89743762519768	8.28468843838246	8.11739635469775	8.06561675534277	8.22626519697034	8.24504396858024	0.0990519874763648	0.663238352516306	0.907110065208622
Merged-chr4-59877232-1	chr4	59876732	59877732	+	677.0	f1_c57bl6.idr	intron (NM_172468, intron 3 of 8)	RLTR40|LTR|ERVK	37824.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	3.60413850505324	3.73039688925295	3.62806844055536	3.5016516915479	3.79151436374918	3.8009420751118	0.164674330078443	0.766839944006301	0.942573703853445
Merged-chr3-116649543-3	chr3	116649049	116650049	+	703.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13128.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	6.48175197824275	6.7417067487755	6.82061156762124	6.57773980934661	6.75949757057035	6.87888476092858	0.0897190434339444	0.740026902340282	0.934416196089869
Merged-chr5-123934250-2	chr5	123933750	123934750	+	574.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001134767, exon 2 of 13)	exon (NM_001134767, exon 2 of 13)	3561.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	3.59187459390667	3.77506341406233	3.68956562964432	3.32518269260624	3.62433401719274	3.70820156474217	-0.439153808732363	0.44823576563285	0.807155185977451
Merged-chr15-89427358-4	chr15	89426857	89427857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_004843, exon 8 of 27)	non-coding (NR_004843, exon 8 of 27)	-1495.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	4.18238202758604	4.0326578884978	4.7259588532249	4.14423891236753	3.82488431001184	4.21808198611112	-0.746499327856432	0.163018851997559	0.53650566139354
Merged-chr19-32779338-4	chr19	32778822	32779822	+	917.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	21745.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.56935192144394	5.81599620663375	5.82832574734843	5.70151903836317	5.81832959766524	5.84097221654247	0.08712647852299	0.780871201449416	0.946078518476608
Merged-chr12-102434608-2	chr12	102434108	102435108	+	990.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	ORR1A2|LTR|ERVL-MaLR	5205.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.12663871121578	6.15318297835131	6.29272835495539	6.43952646707833	6.44611671272855	6.12148578264584	0.278015240921889	0.330040329519648	0.721658583556809
Merged-chr10-20954408-2	chr10	20953908	20954908	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358561, intron 1 of 22)	intron (NM_001358561, intron 1 of 22)	1861.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.26339187347383	2.19827034719503	2.43754925822437	2.40947893875249	2.25136017829116	2.18469258519144	-0.0892448084569814	0.918080912393179	1
Merged-chr8-41019454-4	chr8	41018932	41019932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 1 of 2)	intron (NR_015457, intron 1 of 2)	1964.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.88058284398622	5.96097190850776	5.98638432138794	6.8325382184309	6.88625728363384	6.3776433999364	1.29667083632459	9.7819288452584e-06	0.000393205186162445
Merged-chr16-38467584-4	chr16	38467073	38468073	+	965.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	8640.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	3.83796006310872	3.927052552206	3.74409014721925	3.68212087444475	3.71889841826652	3.65281815178548	-0.511880677933203	0.336047747958931	0.726090328603253
Merged-chr12-32200812-5	chr12	32200278	32201278	+	968.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020272, intron 3 of 10)	intron (NM_020272, intron 3 of 10)	7560.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	5.09817060813731	5.05754446686974	5.16659775286926	4.760334692649	4.75066817280523	4.96329718757511	-0.623815343970063	0.0981322820893833	0.417592737722191
Merged-chr6-54956568-4	chr6	54956086	54957086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15075.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.62405228973728	6.82246287951294	6.6945422012091	7.01599862192305	7.16795409703567	7.07081541108835	0.570338233638709	0.0215354324016915	0.1696412249626
Merged-chr7-119882020-2	chr7	119881520	119882520	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	13438.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	3.62361164568903	3.67236954396585	3.51112523678035	4.30448108449816	4.04790093295913	3.87196062408557	1.52761121461734	0.00554389885131703	0.0659098996620117
Merged-chr1-151039382-4	chr1	151038888	151039888	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-45953.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	5.59546139594312	5.58357560782414	5.8147388040022	5.83402438302791	5.77566203791769	5.80228826568571	0.262158526229209	0.398618678934211	0.775273667788888
Merged-chr7-25778548-2	chr7	25778048	25779048	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 5 of 19)	intron (NM_009465, intron 5 of 19)	10185.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	3.19288894908906	3.01478205317393	3.46966433950627	3.05563496983753	3.35898848272605	3.48849436849718	0.311276606022993	0.643620859102283	0.89991566161065
Merged-chr5-139323411-2	chr5	139322911	139323911	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	2053.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	3.51289695050993	3.5235960142465	3.79545791389183	3.33143315876853	3.30009467271325	3.56995232885636	-0.784944208424797	0.187632337133752	0.572811133759911
Merged-chr7-31000748-4	chr7	31000214	31001214	+	789.387512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18793.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	2.69112714255938	2.74603128583773	2.79444145126225	2.97736946624971	2.57682415785376	2.86811872221728	0.370842198166711	0.621449213728525	0.890731481839396
Merged-chr17-27019125-2	chr17	27018628	27019628	+	970.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007523)	TTS (NM_007523)	1093.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	3.48486718455273	3.16860686844699	3.38722305628652	3.41552655618343	3.20675530424872	3.10710830033006	-0.409296723699525	0.525939948329373	0.849272421520383
Merged-chr6-50303088-2	chr6	50302588	50303588	+	825.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001347213, exon 21 of 24)	exon (NM_001347213, exon 21 of 24)	-41319.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	3.5385408883046	3.50616060078642	3.87039713778656	3.76014228262707	3.52824596176536	3.79572280195599	0.186181383256905	0.743662700622194	0.93574031770482
Merged-chr4-43256365-4	chr4	43255876	43256876	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081413, intron 29 of 39)	intron (NM_001081413, intron 29 of 39)	-10783.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	4.35902985712561	4.26396614162876	3.65656676366987	3.81075021634886	3.5640767934601	4.05199893929057	-0.94332210341553	0.110814263623679	0.444841551070303
Merged-chr13-42016176-2	chr13	42015676	42016676	+	579.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35845.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	5.13526006021218	5.06569442620617	4.60137420334962	5.02968710227177	4.88329485396692	5.02988772485079	0.0210458996424398	0.958679207682071	0.99015359851262
Merged-chr17-65802511-4	chr17	65801943	65802943	+	918.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	19088.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	6.0621938705998	5.94292118560165	6.0141868824603	5.88801464565843	5.7874444609334	6.07477069807061	-0.166402940414585	0.577762758008738	0.87219514592351
Merged-chr3-131272096-4	chr3	131271600	131272600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008212)	promoter-TSS (NM_008212)	1.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	5.32421521888315	5.35407085524852	5.42667634751515	5.12686289718261	5.05195998593219	5.07686547296437	-0.573187058246102	0.0997390320525535	0.421136841555491
Merged-chr12-84618008-2	chr12	84617508	84618508	+	768.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-542.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	5.49208556079128	5.60437951408594	5.44492868885597	5.3802927905394	5.53858842499033	5.38584066959603	-0.146673362943478	0.65771873262384	0.904859102731141
Merged-chr13-3546882-3	chr13	3546396	3547396	+	624.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	RMER6A|LTR|ERVK	8821.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	4.66555725175764	4.67840848515555	4.96033519514745	4.59480841749207	4.6954721459545	5.05627822694266	0.0474348295188996	0.91029989664468	0.97984424692051
Merged-chr8-122432540-4	chr8	122432052	122433052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	388.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	9.09168205210401	9.07793889149575	8.90029667980249	9.08458256861065	9.32847711510707	8.80465243139727	0.0928592039917627	0.683629104375365	0.915479407206029
Merged-chr10-41303257-4	chr10	41302754	41303754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-13.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	7.04838213328038	7.60028143288036	7.22065220042262	7.12583033037311	7.66525426604592	7.38092356844985	0.146691135209957	0.609775883727108	0.885315715493415
Merged-chr2-167314179-2	chr2	167313679	167314679	+	855.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	34999.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	3.97952473154485	3.94567393270186	4.06593247556316	3.91263815198254	3.68204414832897	4.04186223389098	-0.363053106469289	0.481578298159297	0.825155479553839
Merged-chr7-16044873-2	chr7	16044373	16045373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26972.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	5.98464292390428	5.79692173764983	6.35065140589506	6.21949872755799	6.18634780616447	6.54556141800522	0.450658957450825	0.158167470276592	0.529855283817206
Merged-chr7-127091771-3	chr7	127091269	127092269	+	966.5277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178901, intron 1 of 1)	intron (NM_178901, intron 1 of 1)	333.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	5.4358970574417	5.04409068765505	5.08023656583881	3.73799015058515	3.82511607256794	4.05724161405582	-3.70118162801157	6.28054690761033e-12	1.06869477932196e-09
Merged-chr2-124620024-4	chr2	124619527	124620527	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	9731.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.53276883335312	6.67027499508788	6.63327306410147	6.36081397027427	6.40308156871856	6.62744315068546	-0.243679712733432	0.360822174192776	0.746938274913623
Merged-chr13-83585509-4	chr13	83585000	83586000	+	893.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347576, intron 2 of 10)	intron (NM_001347576, intron 2 of 10)	11893.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	2.65325152849612	2.90515158592114	2.93378747564648	2.79917670102535	2.86723459440055	3.06284312288981	0.371658135669839	0.608146246167037	0.884905334748321
Merged-chr5-145232759-4	chr5	145232258	145233258	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028298, intron 1 of 3)	intron (NM_028298, intron 1 of 3)	999.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	6.25521753184837	6.49461244532906	5.89654776135204	6.35951654444889	6.38602016205379	5.98489485915518	0.0231707146941593	0.942832641496534	0.987202156853573
Merged-chr16-95701209-3	chr16	95700673	95701673	+	856.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1234.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.73577087028012	3.70929044234156	3.55189419633537	3.63857259489498	3.73488893199705	3.5094206384463	-0.120234394201157	0.829760864700672	0.960134151531511
Merged-chr8-105332770-4	chr8	105332290	105333290	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 13 of 21)	intron (NM_177699, intron 13 of 21)	6426.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	4.94847495424509	4.89986451149339	5.12647159500895	5.38628479337194	5.51957584497345	5.19123852598055	0.81402465554596	0.024673370698136	0.185508433093928
Merged-chr2-4567807-4	chr2	4567311	4568311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	8057.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.57172947266778	6.6956680703694	7.19632118035435	7.2351780894359	7.14318748380756	6.83558762853443	0.378056748037987	0.200287391436002	0.589262190319174
Merged-chr13-88828500-4	chr13	88828014	88829014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037987, intron 1 of 10)	intron (NM_001037987, intron 1 of 10)	7042.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	3.44298404396134	3.54172243995627	3.43203706866398	3.68601202008875	3.733158203454	3.56110225323236	0.678271701795743	0.229944603315202	0.62567791212071
Merged-chr2-118554888-1	chr2	118554388	118555388	+	1000.0	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-5202.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	3.86269901201646	3.8723962993453	4.04439459022424	5.66391398126532	5.67368581729028	5.39212431645233	4.37969099642131	3.18626577677179e-17	1.34488853242321e-14
Merged-chr13-45358403-3	chr13	45357898	45358898	+	982.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31344.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.03279610765686	3.27865927136981	3.0398038635097	2.89127679743865	2.52447649134534	2.80140843675926	-1.98195524003085	0.0137848341470151	0.125441408651409
Merged-chr1-131913541-2	chr1	131913041	131914041	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 1 of 6)	RSINE1|SINE|B4	3083.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	2.70062447942778	2.82398440472651	2.81518819129637	3.08877069254113	2.87089210122435	2.94969811333958	0.96437154546789	0.174882762883252	0.554559639252654
Merged-chr1-74375553-1	chr1	74375053	74376053	+	1000.0	f0_balb.idr	intron (NM_013612, intron 1 of 14)	intron (NM_013612, intron 1 of 14)	350.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	8.90401994904115	8.83193087812672	8.66299163582518	8.78112229320434	9.06728075132508	8.62728554018485	0.0522064065819478	0.816376494011738	0.956664796338092
Merged-chr6-129230407-4	chr6	129229911	129230911	+	990.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7634.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	6.80636330404482	6.63610496056238	7.01312550640116	7.00423718137137	6.97765459015091	7.16930144066304	0.352951083595256	0.171576019697104	0.549748890798409
Merged-chr6-125354977-6	chr6	125354512	125355512	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	5289.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.14132801684306	5.01990812148122	5.43820786111797	5.22926490760421	5.27734571502174	5.68082546527433	0.400821757254723	0.287940938924741	0.685252288160501
Merged-chr6-38641855-1	chr6	38641355	38642355	+	544.0	f1_balb.idr	Intergenic	Intergenic	-4616.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	3.49611753257419	3.13521684917937	3.47399443995017	3.55399546980414	3.15919877457229	3.20206457231391	-0.227892687115064	0.727950588811748	0.930348818287287
Merged-chr6-97280699-4	chr6	97280216	97281216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27936.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.51172662790782	4.3438643590135	4.55291570520075	4.91602877310044	4.67105893276662	4.19845638306288	0.406976660420021	0.387586368571864	0.76768118438771
Merged-chr17-48265564-3	chr17	48265069	48266069	+	824.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	1274.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	6.37444885563258	6.7515600614228	6.59969093084493	6.67711592401355	6.56798627414399	6.72298491632088	0.107195380352975	0.693689559007902	0.918993212493267
Merged-chr11-110970659-4	chr11	110970152	110971152	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010604, intron 1 of 1)	MIRb|SINE|MIR	2619.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	6.04607219929981	5.5456431417711	5.62761918883846	5.87944186992557	5.87893226818225	6.03823269437277	0.290764923808442	0.380915429474354	0.762876045339063
Merged-chr18-6490817-4	chr18	6490324	6491324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	33.0	NM_027497	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	8.50906715483377	9.04332038436471	8.72400085505614	8.60104532712989	8.6522484149183	8.66084595483359	-0.196843044144475	0.394034229353861	0.772046311610617
Merged-chr2-70669354-2	chr2	70668854	70669854	+	725.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	7845.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	4.21090437369762	4.56845782474021	4.40220764296445	4.42083524582452	4.30874545077551	4.66922484387182	0.154187198896135	0.736799117189611	0.933284983163126
Merged-chr15-83510424-3	chr15	83509926	83510926	+	770.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	481.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	3.86380762327584	3.66958953767812	4.06084750424625	3.86649867075575	3.97038838173439	3.78915156091081	0.0526478002794807	0.920959379746151	0.982463724790289
Merged-chr9-121348235-4	chr9	121347742	121348742	+	774.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-18716.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.13282556143297	5.02308304876969	5.18741843990979	4.80422155313073	4.65598220808235	4.58676717148719	-0.942598405571504	0.0155569006644721	0.136158471703944
Merged-chr8-80984097-4	chr8	80983585	80984585	+	999.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	30821.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	5.57406811857045	5.89255558237393	5.44019619296775	6.06495251142392	6.33412425026268	6.11273407224822	0.907454432000543	0.00541674574876901	0.0647674350141647
Merged-chr1-16225598-4	chr1	16225099	16226099	+	901.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	119717.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	4.42278244743953	4.27416284624549	4.68167487851711	3.92371902386217	4.32779006129001	4.63802934633781	-0.361003019063558	0.478166954199916	0.823624523176113
Merged-chr9-107871701-2	chr9	107871201	107872201	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029169, intron 1 of 20)	intron (NM_029169, intron 1 of 20)	1118.0	NM_011251	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	5.16415141978196	4.78450498432029	5.14650337992651	5.21967407397212	5.53869839678314	5.07234038652196	0.545402520798147	0.16327300340484	0.537044711519546
Merged-chr13-113486652-4	chr13	113486159	113487159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	16185.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	8.32503804457082	8.14306920234174	7.9740611649077	8.18311791973493	8.4795593673586	7.86696732280333	0.0711212378508277	0.781509659659321	0.94624509998156
Merged-chr13-49203585-2	chr13	49203085	49204085	+	982.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_026738, intron 5 of 5)	intron (NM_026738, intron 5 of 5)	12441.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	3.78394251056667	3.21142579257959	3.30224762374679	3.34182246034112	3.27917583314413	3.4888625965186	-0.353432436339249	0.58580318301305	0.875131338300747
Merged-chr10-62651337-4	chr10	62650831	62651831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053183)	promoter-TSS (NM_053183)	-113.0	NM_053183	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	8.27829735858961	8.62455797023753	8.26272205254636	8.36873441520027	8.3269392028498	8.07219631505051	-0.191679598658185	0.410192878154544	0.783116615634315
Merged-chr15-27630756-4	chr15	27630260	27631260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013792)	promoter-TSS (NM_001013792)	-67.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	7.0405354206403	6.82529526822284	6.5757889799305	7.08631302767734	6.75527660109259	6.87872743720801	0.115921065377682	0.674489218709669	0.911852710156386
Merged-chr4-102658754-4	chr4	102658245	102659245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68902.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.87269684802578	4.80362791170359	4.58468792255911	4.85910638090647	4.72455574093928	5.31170983370183	0.4674515100269	0.274265273514504	0.671699134465491
Merged-chr6-120480568-3	chr6	120480085	120481085	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 12 of 12)	intron (NM_008359, intron 12 of 12)	13222.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	3.90306398513416	3.78430405223578	4.0325585653872	3.91633789278617	3.86189503087133	3.85979121588505	-0.0757747598838173	0.881973726120378	0.972996258525461
Merged-chr14-27414126-2	chr14	27413626	27414626	+	958.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14708.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	3.73444140289054	3.71634206714228	3.71260923964832	3.9408637340273	3.90000844189521	3.72968658028289	0.463598766327006	0.376947344601811	0.759535891745429
Merged-chr7-4528154-4	chr7	4527660	4528660	+	842.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 4 of 11)	intron (NM_001033548, intron 4 of 11)	4282.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	5.16730318905271	4.45269678405076	4.88031139548936	5.18588594844925	4.88538900559566	5.05341308243406	0.378215012140031	0.38670048406698	0.767154667509758
Merged-chr16-29527302-4	chr16	29526788	29527788	+	912.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 2 of 21)	intron (NM_001164613, intron 2 of 21)	14195.0	NM_172613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	2.88294467167443	3.21112153575812	3.03900005921359	3.2112457302576	2.85867778926646	3.22774690373032	0.231716401786945	0.74187459428167	0.935032357972542
Merged-chr2-48949329-4	chr2	48948820	48949820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177313)	promoter-TSS (NM_001177313)	-53.0	NR_149356	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	7.04365553347225	7.41741863190477	7.10444708832544	7.22328101112899	7.40096101707931	7.13648461416332	0.0896599799918645	0.726138431154577	0.929743505822386
Merged-chr2-127208245-4	chr2	127207717	127208717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198630)	promoter-TSS (NM_198630)	63.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	7.66539752408622	7.99749055975582	7.48006867197416	7.49484038653736	7.85606249757478	7.37167347980739	-0.201184328958766	0.458918693099439	0.813236440920954
Merged-chr11-118249381-2	chr11	118248881	118249881	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-789.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	7.63302956424457	7.6836912175901	7.47450573837039	7.58837189409899	7.83328952109036	7.36731366365437	0.0238589815189586	0.922828801673041	0.982621045978137
Merged-chr12-91764495-4	chr12	91763996	91764996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21940.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.06565037309261	8.01067044452459	8.09793544485721	8.34123026273335	8.35387151394379	8.1190034446492	0.314306341039334	0.136957136544782	0.494421858545631
Merged-chr6-29525320-2	chr6	29524820	29525820	+	975.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1305.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	7.30092986720302	7.11067968986034	7.22159985735705	7.0324267574681	7.19939103760207	7.38913746232147	-0.00379603595371091	0.987703899196475	0.997223245230291
Merged-chr2-58568710-2	chr2	58568210	58569210	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	1376.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	2.58679674142456	2.54639007411931	2.58258336482769	2.58000446374996	2.46989612383992	2.83743825860813	0.33825922847929	0.664719506233618	1
Merged-chr1-171397700-3	chr1	171397217	171398217	+	809.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 2 of 11)	intron (NM_001005508, intron 2 of 11)	8757.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	4.68817629245622	4.79703941370223	4.9337050059707	4.47904862677527	4.58752106785365	4.58699852829802	-0.594592424096819	0.147160098897742	0.511947497171096
Merged-chr6-53287267-4	chr6	53286777	53287777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-26.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	4.9865341797709	4.6992399060743	4.14355169951456	4.34335237838067	4.30907052635735	3.93185545700385	-1.1296814199368	0.0361298022142929	0.233778210535187
Merged-chr15-36684916-1	chr15	36684416	36685416	+	639.0	f0_balb.idr	Intergenic	Intergenic	-75943.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	3.43684726547814	2.79046824669588	3.00872464437264	3.2637302725235	3.43614992595454	3.20891915933736	0.786066208500376	0.296448620819681	0.693162952879335
Merged-chr13-8870623-2	chr13	8870135	8871135	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	409.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	7.25392774920601	7.59857274777419	7.49669503932929	7.59652077387595	7.65439748586185	6.95208495576137	-0.012401258048318	0.965599306127568	0.991995030766812
Merged-chr5-122303551-4	chr5	122303030	122304030	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	19132.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	2.72551171560174	2.80355547308308	3.02158483121802	2.72266186421114	2.63568440253097	2.74101908102037	-0.804373386253033	0.276445026638941	0.673866688369557
Merged-chr16-59639252-4	chr16	59638764	59639764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019665)	promoter-TSS (NM_019665)	75.0	NM_019665	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	6.08016329801683	5.96181227030214	5.92346003538274	6.20734928182227	6.38169994100858	6.1686382775247	0.456884496737332	0.111905488072871	0.446815084509229
Merged-chr18-39196743-4	chr18	39196227	39197227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	203582.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.21949651735641	5.85768849475525	5.97574050688399	5.81280945573849	5.94988803535401	6.03665710783642	-0.166687031605775	0.588186319931982	0.876237788811978
Merged-chr8-72350226-4	chr8	72349727	72350727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31165.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.58889044588004	5.85844206531046	5.68969640322907	5.34621235586033	5.3506966737022	5.64695444726122	-0.517589812118215	0.121691291784121	0.466686132035451
Merged-chr19-45075591-1	chr19	45075091	45076091	+	799.0	f0_balb.idr	promoter-TSS (NM_001362397)	promoter-TSS (NM_001362397)	350.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	6.44433692728954	6.64171456440753	6.84101148070788	6.54164565826539	6.49299615838179	6.54259564239157	-0.191254895218836	0.480474773927288	0.824543506620807
Merged-chr5-52783061-4	chr5	52782540	52783540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308144)	promoter-TSS (NM_001308144)	-15.0	NM_001308144	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	4.46530368600185	4.5686593116108	4.34890552304937	4.82596617811103	4.28902317794542	4.41799353275271	0.155381804699952	0.736843326892047	0.933299735801888
Merged-chr18-63684789-2	chr18	63684289	63685289	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016792, intron 1 of 7)	intron (NM_016792, intron 1 of 7)	7570.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	3.51598208000311	3.55193514405374	3.67880865853615	4.16837251218249	4.05245842974767	3.95861446094916	1.59117169501364	0.00279873792686464	0.0399065648796775
Merged-chr4-59575337-3	chr4	59574867	59575867	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6196.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	3.63965697056125	3.59143361319299	3.49726969685084	3.37575323543516	3.24983197492752	3.67234432346503	-0.536148395176287	0.371832302855411	0.755841610252976
Merged-chr10-60259861-4	chr10	60259368	60260368	+	975.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17760.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.41398197800077	6.17434674745195	6.6979706737935	6.92916954121272	6.66130129733816	6.39314843418358	0.397324643127094	0.194560195065483	0.58191821391117
Merged-chr2-34963359-7	chr2	34962879	34963879	+	868.628601	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1607.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	6.00565397624265	6.10575705719374	5.3856920799547	5.2566762409593	5.47517392368122	5.00505484455165	-1.13339027267269	0.00392932554949409	0.0512419637275865
Merged-chr16-33955741-2	chr16	33955241	33956241	+	702.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	11297.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.08769137918021	5.09755157206299	5.38639327408363	5.13365588144194	5.17751633031069	5.03487441806238	-0.134403371626787	0.712962360962962	0.92531822516521
Merged-chr13-98957958-3	chr13	98957468	98958468	+	949.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26597.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.94489500121666	4.01663665404532	4.09529648924611	5.67634578651283	5.94775934787913	5.29512048335011	4.09063486755671	2.01739412077939e-16	7.30500645272311e-14
Merged-chr15-80220464-4	chr15	80219960	80220960	+	868.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13620.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	5.76295672006745	5.55191112595885	5.60729483896071	6.01714344059791	5.83180896408566	5.99681286018749	0.539545740297895	0.0824303279269568	0.379666088554908
Merged-chr17-47506678-2	chr17	47506178	47507178	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	1627.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.3171849681282	3.12696265267805	3.20158244164512	3.09286792407174	2.8733325858207	3.1585570631937	-0.788658496730917	0.238587086669608	0.635336330131045
Merged-chr2-124577100-4	chr2	124576585	124577585	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-33211.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.35148038309523	4.52890854124777	4.77408694758741	4.5584348585292	4.16732610035686	4.45392278228475	-0.396143743323635	0.391142650309473	0.770205086724028
Merged-chr4-149774287-4	chr4	149773773	149774773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027460)	promoter-TSS (NM_027460)	-6.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.85690764862457	7.70578661932498	7.45896207630397	7.80674737168741	7.54364540622165	7.47315185572412	-0.105283918142269	0.669718667189217	0.909740802307883
Merged-chr13-54591365-2	chr13	54590865	54591865	+	855.083374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025933)	TTS (NM_025933)	1134.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	5.93494767341745	6.01608202869638	6.19303115762285	5.92287784143687	6.16033162280333	6.25290946019822	0.122744322411096	0.680961002312942	0.914522966124234
Merged-chr18-62186214-3	chr18	62185723	62186723	+	905.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6123.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.60827794151266	6.63114844257703	6.39631628391999	6.63455519890345	6.37328412231677	6.68276141985034	0.0087294585031397	0.974622197360833	0.994296985713596
Merged-chr2-93214976-2	chr2	93214476	93215476	+	786.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	27428.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	3.26445073591806	3.47507488139215	3.41927756143531	3.46174936615449	3.2570938849265	3.54336696846914	0.115852192871969	0.848109904475761	0.964318271116593
Merged-chr7-126752924-2	chr7	126752424	126753424	+	587.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6702.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	2.94868899951953	3.22578121333925	3.72396923139492	3.11982992958586	2.98819134738686	3.35647319026272	-0.694610909456109	0.335657883701672	0.725791658167127
Merged-chr6-97442170-4	chr6	97441676	97442676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	URR1A|DNA|hAT-Charlie	17110.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.80323957700788	7.85784237436393	7.69187515489043	7.90806106192318	7.98797245366093	7.66497421470167	0.112444307362358	0.620014498834368	0.890023686663772
Merged-chr2-124606369-2	chr2	124605869	124606869	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-3927.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.75384689828857	2.49409852617547	2.52844436129362	2.63719032662818	2.53965203002609	2.72984249477472	0.191747187289668	0.805903010130427	1
Merged-chr4-128666589-4	chr4	128666085	128667085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11883.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.31954179223563	7.59813648266832	7.54368729420576	7.08773466510702	7.69995667469013	7.29556972785237	-0.140048960041774	0.609056207302887	0.885053989692691
Merged-chr10-34131542-4	chr10	34131044	34132044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3572.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	6.93039050484752	6.840604203272	6.59346667332608	6.67357869050289	6.92194578272726	6.65235923723625	-0.0633541110270057	0.813470263657813	0.955940138311315
Merged-chr16-92826111-4	chr16	92825642	92826642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-68.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.11525039405542	8.36329375150287	7.9426594201164	8.07299045208521	8.35843276574702	7.95914673707755	-0.0137257553572101	0.955198951376853	0.98974202431386
Merged-chr7-16311018-7	chr7	16310513	16311513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	1430.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	6.77667397016107	6.02110260603883	6.44559667253174	6.93594157169702	6.51960708681673	6.80156352660905	0.485965806222497	0.13661303208167	0.493740502092718
Merged-chr13-119836671-4	chr13	119836166	119837166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6449.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	3.98749857348489	3.74488196364424	3.95902559275695	4.04503603491963	4.15441197505925	4.02830900882225	0.546756180906617	0.274824471761319	0.672203259945391
Merged-chr19-5488024-3	chr19	5487529	5488529	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153768, exon 1 of 16)	non-coding (NR_153768, exon 1 of 16)	350.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	6.43083655585891	6.59867719349507	6.5749391379608	6.6307387088613	7.05474821852635	6.79474509939096	0.489388778167933	0.0732229258831377	0.355590498522316
Merged-chr5-95914835-3	chr5	95914337	95915337	+	731.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42102.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	5.29530712843442	5.43781624717925	5.49786104182624	4.58274430174357	4.65661775294449	5.18642204671093	-1.24509543340997	0.00204825409448181	0.0315299477224167
Merged-chr10-108185437-4	chr10	108184935	108185935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	23035.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	3.43026209552842	3.34102827578182	3.2433257965601	3.14515755305437	3.15146192851082	3.1979655252063	-0.751140710829869	0.22981719935918	0.625509726187777
Merged-chr11-115692980-4	chr11	115692482	115693482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	6552.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	8.77576178474148	8.82129846626921	8.17325852067257	8.5964525484579	9.12520302067254	8.2071797617104	0.109988296636168	0.72291034633602	0.928972897683858
Merged-chr3-60469018-2	chr3	60468518	60469518	+	828.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3812.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.16011529613003	4.00999842397825	4.36412320279129	4.25205921334302	4.318801794673	4.73300937654815	0.702483040190721	0.146698781798277	0.51098929319621
Merged-chr17-71183451-4	chr17	71182925	71183925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	-107.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.72900379074572	7.4793896284707	7.27992535600667	7.46531476585519	6.99965313418049	7.30253180244434	-0.367052833701361	0.170915677892807	0.548819192146981
Merged-chr4-132610760-4	chr4	132610269	132611269	+	966.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28277.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.29935937085004	5.79305153808715	5.34024453620205	5.79148505647269	5.79573023845776	5.22265755996506	-0.434574877462823	0.296180181895924	0.692944202873501
Merged-chr2-130425369-1	chr2	130424869	130425869	+	566.0	f1_c57bl6.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-728.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	5.83023180275643	6.20811881464626	5.30193647329788	5.80434337929156	5.5537647089112	5.10161513260274	-0.576674368832712	0.169819029168371	0.54694413698633
Merged-chr5-68033586-4	chr5	68033060	68034060	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	1725.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	2.82169609435809	3.08142931978031	2.81445423420933	3.21498151755071	3.18601250550241	3.08055353910674	1.11749600893953	0.113186217628065	0.44938889230771
Merged-chr12-3807615-5	chr12	3807067	3808067	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	407.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.3560273427961	5.73310852603208	6.2142473541216	6.6849728977207	5.88894266691596	5.88870716437399	0.162542465079993	0.675095887443517	0.911995407960456
Merged-chr14-105897379-4	chr14	105896873	105897873	+	934.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011897)	promoter-TSS (NM_011897)	-554.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	4.4049448812305	3.8270568084991	4.02959633033444	3.63953908609697	3.44976408080563	3.57208846890166	-1.8432660127771	0.00146962084411371	0.0243545531163142
Merged-chr15-12204369-2	chr15	12203869	12204869	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-659.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	5.9682326600737	5.82399742454386	5.67953123823384	5.74689233659591	5.91058852914885	5.82102980653219	-0.0102673788014793	0.973520456131361	0.994039095662068
Merged-chr15-103383062-3	chr15	103382547	103383547	+	855.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16256.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	2.75948789247055	3.07004360088731	2.87962531555812	3.03783890140048	2.95360142720064	3.01412824691824	0.414226786419352	0.554929854692886	0.862989905297353
Merged-chr13-3743877-1	chr13	3743377	3744377	+	551.5	f0_c57.idr	Intergenic	Intergenic	60441.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	2.7760785700923	2.58350985446975	2.70849641015078	2.372528687326	2.29155046375854	2.46627616960832	-2.10250005692018	0.0149287371066831	1
Merged-chr17-44614209-3	chr17	44613702	44614702	+	960.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 6 of 7)	intron (NM_001271627, intron 6 of 7)	121974.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	2.71704596959465	2.67106295526088	2.89011156901552	2.73689912414838	2.40479957520431	2.66041666962462	-0.854430379519775	0.281854347091078	0.679908771156903
Merged-chr12-21393958-3	chr12	21393454	21394454	+	621.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011739, intron 4 of 4)	MTD|LTR|ERVL-MaLR	-20322.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	4.22867313593923	4.20890731951424	4.46906374856591	5.34644293258553	5.55082296158276	5.25937935128697	2.55365731678824	5.80606868015911e-10	6.59087807283327e-08
Merged-chr19-6408938-4	chr19	6408452	6409452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011242, exon 12 of 17)	exon (NM_011242, exon 12 of 17)	8369.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	3.98908302719329	3.77079006345661	3.7750419025909	3.77268274166972	4.05693324760475	4.34928993806217	0.664980653659226	0.217971334485395	0.612094050145481
Merged-chr12-40447363-3	chr12	40446879	40447879	+	937.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1326.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.75920263778791	5.73548999423521	5.72962212213945	5.65511651762604	5.60256348635534	5.48324003253225	-0.285742448618703	0.361633341693295	0.747458707295016
Merged-chr8-72294503-2	chr8	72294000	72295000	+	839.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-24562.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.87624939050153	4.47612667106125	4.67526260560914	4.77152713303763	4.69052812868868	4.48691580209899	-0.0619024212343963	0.885254645688409	0.973549591486895
Merged-chr19-45073970-2	chr19	45073470	45074470	+	646.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1271.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	4.10171101289328	4.54001146836257	4.70093416883703	4.38407868416553	4.60070002682493	4.80129382983237	0.334969409612625	0.480838301692104	0.824838028433526
Merged-chr19-5698568-2	chr19	5698068	5699068	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 10 of 11)	MIR|SINE|MIR	-5903.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	2.50349675402397	2.46748014455837	2.8154732630931	2.39236733978778	2.49241328468328	3.20926951904867	0.733109909667945	0.409440207148862	0.7827566573946
Merged-chr15-59650628-4	chr15	59650134	59651134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1980.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.62301441805647	7.62667226280313	7.36399274370505	7.44185505122947	7.29076721378117	7.39924389195627	-0.255486144052774	0.273153756831495	0.670419969277183
Merged-chr19-5509935-2	chr19	5509435	5510435	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362042, intron 1 of 11)	intron (NM_001362042, intron 1 of 11)	582.0	NM_001362042	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	5.12466604158101	5.14637676947429	4.89221305274759	4.99505471710068	5.07960961060697	4.8807205432908	-0.155853148722661	0.678991386710008	0.913553914280182
Merged-chr5-114689840-4	chr5	114689346	114690346	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	1089.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	7.42553070297953	7.38084829191517	7.48764647730575	7.56927783787445	7.599198344014	7.10255234726905	0.0347546836599406	0.890838017317628	0.974581703799143
Merged-chr3-138959156-2	chr3	138958656	138959656	+	584.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001040690, exon 8 of 15)	exon (NM_001040690, exon 8 of 15)	116045.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.16563770480456	4.51134527803736	4.6316640253147	4.56673316314715	4.57848473357894	4.73460944863892	0.445422330719231	0.317528710676734	0.71134200749314
Merged-chr1-165648116-2	chr1	165647616	165648616	+	675.875	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178593)	TTS (NM_178593)	-13575.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	2.92580206920908	2.756954623153	2.98841351660023	2.88761879640029	2.76339858752598	2.88301493224587	-0.235550984089754	0.73892824894402	0.934106252288505
Merged-chr10-24712737-2	chr10	24712237	24713237	+	725.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008813)	promoter-TSS (NM_008813)	-578.0	NM_008813	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	5.75298050922179	5.7170107823993	5.7121237004452	5.40784317474593	5.70783583728531	5.15455179315533	-0.493781202464614	0.16069139721096	0.533402871469642
Merged-chr11-104425254-4	chr11	104424764	104425764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081045, exon 2 of 14)	5' UTR (NM_001081045, exon 2 of 14)	17027.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	6.82589997993458	7.11262438241534	6.84821639436402	7.04928820711744	7.00977384878625	6.99227548701802	0.117065029008419	0.640051420569064	0.89826778327701
Merged-chr5-139830856-4	chr5	139830351	139831351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3957.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	3.78949198260492	3.71847846885673	4.09513373460643	3.66469123340289	3.56490221738957	3.94012345125431	-0.473139768009931	0.395008597326779	0.772579826044138
Merged-chr9-41122520-4	chr9	41122025	41123025	+	971.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	ID4|SINE|ID	35537.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.7464657533068	6.05693991316937	6.12005544085152	5.77082603738895	5.8512355882347	5.96380948367259	-0.20873691471805	0.502458780395191	0.836517047394126
Merged-chr9-44513280-4	chr9	44512784	44513784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	13137.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	6.20915831279177	6.0705791135477	6.28334597085154	5.97071948022161	6.01289349358275	6.37898681874408	-0.107296265717142	0.721244802824507	0.928451291671431
Merged-chr7-122383471-4	chr7	122382974	122383974	+	919.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	MTEa|LTR|ERVL-MaLR	94349.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.61709729099303	3.50050928660713	3.70305937797156	3.37790031973058	3.32843696471074	3.51567727717486	-0.749049505849205	0.197450006392154	0.585426886113113
Merged-chr8-11249229-2	chr8	11248729	11249729	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-63576.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.40669626257325	4.60168597416553	4.44550525824619	3.71219642942112	3.47235137522042	3.7465839732483	-2.72422941493721	7.0669930077564e-07	3.98394548908804e-05
Merged-chr8-108722878-3	chr8	108722386	108723386	+	784.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8242.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.28134453335237	6.18500128192256	6.08976053480751	5.88659045376699	5.80688123330147	5.94456132649827	-0.549365898025789	0.0582537284633304	0.311861115289812
Merged-chr2-59960322-4	chr2	59959821	59960821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 9 of 35)	intron (NM_001001182, intron 9 of 35)	-77715.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	5.36478264713283	5.1795030014996	4.70873624902818	4.9927234640804	5.13213266988486	4.98110066905767	-0.178199874892906	0.66079410259994	0.906145159206461
Merged-chr5-35104997-2	chr5	35104497	35105497	+	748.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	700.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	5.22866484499139	5.23697848312453	5.04822645618839	5.42766058371896	5.20213267243251	5.21825003691788	0.212467806112729	0.550478710022177	0.860709619458349
Merged-chr8-46845154-4	chr8	46844637	46845637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 7 of 7)	intron (NR_152560, intron 7 of 7)	105392.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.33583464578769	6.86593750471498	7.37173111121351	7.27972261569501	7.34175266907101	7.38691355018985	0.193033701204229	0.46158563701828	0.815057779610765
Merged-chr12-32208694-4	chr12	32208199	32209199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-50.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	6.67869235413341	6.82535979291455	6.8085201166948	6.97514109107495	6.82216945830872	6.8669225586807	0.182677267474374	0.463202203055878	0.815705932518314
Merged-chr14-25475001-4	chr14	25474512	25475512	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	15827.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.27905243952486	7.52407209149404	7.15557080778855	7.31429004174877	7.21111881794962	6.86111307332988	-0.27367189642822	0.302223337579462	0.698958713820873
Merged-chr3-96262382-4	chr3	96261899	96262899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_033596)	TTS (NM_033596)	918.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	7.82448073092333	7.77479985454401	7.38542599372129	7.68700516540326	8.03355092688937	7.59139232665357	0.157110152311537	0.546738360980729	0.85898091530532
Merged-chr19-32903918-4	chr19	32903420	32904420	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146343.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	4.83073429448644	4.55414794916858	4.80600137180845	4.56643372512988	4.1846883124021	4.52192764057377	-0.751997053560107	0.0905172762081805	0.400199868157826
Merged-chr3-109025748-4	chr3	109025251	109026251	+	996.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	1856.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	4.26836676515569	4.16536365692101	4.09973611366003	4.42402142938713	4.41969084379188	4.16988542087181	0.448707533233459	0.333199135920665	0.724131786290038
Merged-chr6-112752729-2	chr6	112752236	112753236	+	670.125	f0_balb.idr|f0_c57.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-56066.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	4.43349819294876	4.34365335983386	4.59894403145597	4.04193659840949	4.25352534081467	4.51013846281653	-0.47563433860787	0.309924775890117	0.705463568657226
Merged-chr4-6209752-4	chr4	6209244	6210244	+	960.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026534, intron 6 of 7)	L3|LINE|CR1	18639.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	3.31480557973546	3.52740175966368	3.52850150283453	3.91376233806816	3.77163951196817	3.6557282580076	1.15042215798368	0.0437346669613588	0.262919887906997
Merged-chr18-39637078-2	chr18	39636578	39637578	+	778.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136419.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	5.84470850309199	5.9586122445861	6.04573404584498	5.99636065342777	5.87434195593844	5.89971209008878	-0.0410775041010353	0.88977228171386	0.974313026039223
Merged-chr19-43525254-1	chr19	43524754	43525754	+	811.166687	f0_balb.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-649.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	7.21166442489221	7.18101562764067	6.69163704676799	7.27894975877564	7.38128399933601	7.20176692000397	0.34594813539917	0.195239940434277	0.582885610090219
Merged-chr3-59127146-4	chr3	59126652	59127652	+	738.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287119, intron 1 of 2)	Charlie1|DNA|hAT-Charlie	3610.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	3.63120461803609	3.6636235291924	3.78124258070777	3.54302008988113	3.73824598087362	3.69880235129416	-0.0831705592375941	0.878940742798805	0.972069683693405
Merged-chr5-105685085-4	chr5	105684590	105685590	+	973.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14879.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.10260186406651	4.16446012626296	3.46791963708025	3.73114098133322	3.48353415713309	3.72112082509308	-0.986913115979581	0.104861849608187	0.432054705729044
Merged-chr5-33658554-4	chr5	33658118	33659118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356983)	promoter-TSS (NM_001356983)	490.0	NM_001040435	21335.0	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	7.27178883279093	7.19032947317149	7.25672515308604	7.40276607191709	7.62434531188836	7.50746442440697	0.411564920814618	0.0732439314251788	0.355612151127686
Merged-chr10-43703250-5	chr10	43702753	43703753	+	973.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-42905.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	3.6916395792102	3.65016891354561	3.61028377114832	4.04274474833788	3.7343150098318	3.6261364395508	0.538206841291835	0.330660923109314	0.722066819496112
Merged-chr3-121549898-2	chr3	121549398	121550398	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17554.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	2.3515086479531	2.42684118600475	2.42199868098995	2.53664916724785	2.46853362050861	2.74494123660711	1.1127627593354	0.16867010416557	1
Merged-chr9-44113604-4	chr9	44113091	44114091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153762)	promoter-TSS (NM_153762)	-540.0	NM_153762	213211.0	Mm.392032	NM_153762	ENSMUSG00000053128	Rnf26	8030450I18Rik	ring finger protein 26	protein-coding	5.18789776376097	4.98019421466578	5.32253535394573	5.20495021903412	4.90780845281387	4.9190728903813	-0.304518395073999	0.425212666636962	0.792988748085012
Merged-chr5-113667569-4	chr5	113667074	113668074	+	842.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17184.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	2.97358352258066	3.02097504115613	3.23370525396345	3.15389855034062	2.96094194340937	3.2499475964061	0.202625835419574	0.761406765531746	0.941257991447882
Merged-chr1-165648691-2	chr1	165648191	165649191	+	547.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178593)	TTS (NM_178593)	-14150.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.02686252619305	2.86293213300827	2.792960595186	2.93329300779395	2.8850958214958	3.04860847297513	0.248627149289797	0.72232163413793	0.92872455507539
Merged-chr11-111327086-4	chr11	111326598	111327598	+	711.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	260934.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.85510543811751	2.91604140693887	2.88815079981108	2.55135851404894	2.72300167737534	2.96021552003787	-0.693868188743519	0.358138159778267	0.744578238636691
Merged-chr2-45086522-3	chr2	45086005	45087005	+	854.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	CT-rich|Low_complexity|Low_complexity	23772.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	8.03688458956109	8.04706484342736	7.55998491293504	7.70360715151035	8.19705516445244	7.39724626824111	-0.122142495797918	0.682660273323829	0.915155649724165
Merged-chr3-115689609-4	chr3	115689109	115690109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25446.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.62598608756593	6.87915474744731	6.54697774308708	6.17427024525525	6.23649709755674	5.95672834518941	-0.912031294928951	0.00147915368766644	0.0244638083966109
Merged-chr15-80011985-3	chr15	80011559	80012559	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	2749.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.69810364406322	6.08885865500068	5.93829845993731	4.88683433721388	4.87926913448795	4.87084457404694	-2.05580689994137	1.20731310002856e-08	1.06984141030007e-06
Merged-chr11-16989355-2	chr11	16988855	16989855	+	904.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 5 of 9)	RMER21B|LTR|ERV1	19363.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	3.87691931907291	3.97425049370101	4.31294042795848	4.11978674769692	3.99743630428379	4.02473443536933	-0.0277944925596067	0.95608164119095	0.989807313282509
Merged-chr13-95799661-3	chr13	95799197	95800197	+	708.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_027711, intron 2 of 35)	L2b|LINE|L2	92225.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.91345526329737	3.79391758336723	3.56228659342282	3.90657341825991	3.50947905391727	3.7457253288401	-0.141834712345325	0.803387985448357	0.953491099476343
Merged-chr17-50571230-4	chr17	50570732	50571732	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	61685.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.11887697877684	5.15960129728004	5.07871068337079	5.4559394796792	5.59880430446337	5.28179237477134	0.67854391102526	0.0523739848899274	0.292675254178716
Merged-chr15-84184181-4	chr15	84183665	84184665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8068.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	6.53038710518936	6.63482302808382	6.98128329810704	7.23695978540777	7.39209054972772	7.16616371714179	0.847012840123534	0.00130161057640913	0.0221526718841994
Merged-chr5-17876858-4	chr5	17876367	17877367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	L2|LINE|L2	12092.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	5.99948119043741	6.14255393971841	6.20914170232346	5.78163171671993	5.62566910987121	5.90287591106596	-0.618438897633354	0.0412095922932991	0.253471892041753
Merged-chr2-84596566-2	chr2	84596066	84597066	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52914.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.44561886159435	3.43553517630958	3.56112325327622	3.3349470084401	3.28793967605199	3.63046843661659	-0.230349196837751	0.699664829896952	0.920673966305366
Merged-chr10-67205113-4	chr10	67204602	67205602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	19352.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	7.43429868178298	7.59484278215861	7.42695213303448	7.46623031681148	7.50469490476813	7.30702063267314	-0.0831538094141768	0.717801413200269	0.927191179259769
Merged-chr8-3676495-4	chr8	3676021	3677021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025701)	promoter-TSS (NM_025701)	44.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	5.78923000566325	6.33053672238855	6.17390427283684	6.29067694165615	5.98186882307486	6.47655366091193	0.232111786941398	0.481679396175753	0.825175087953553
Merged-chr5-20949556-1	chr5	20949056	20950056	+	549.0	f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-1433.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.07169271519166	4.32852278696423	4.20981019121105	4.40971751683133	4.51002750317404	4.13260640046654	0.430466116859363	0.363355827873174	0.748994025844601
Merged-chr3-142499243-4	chr3	142498753	142499753	+	848.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	2319.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	2.7382005636459	2.55731511067818	2.63955992081244	2.8805893501263	2.54907911594562	3.12816680858271	1.13885022143428	0.152000004646634	0.519858592920945
Merged-chr12-111675899-4	chr12	111675386	111676386	+	958.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2219.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	6.96278487247458	6.94938639172984	7.19060142563319	7.3655678130691	7.76103025173915	7.09653246867707	0.618822755134789	0.0262400730603848	0.192334742706879
Merged-chr11-51762201-4	chr11	51761698	51762698	+	805.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1465.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	4.04403246341859	3.70171793937031	4.04143081358359	4.1838045495459	3.72067023148569	4.10986063409483	0.237079701674788	0.661990690043595	0.906520766537983
Merged-chr13-111980442-4	chr13	111979939	111980939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112503.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.77500477801455	7.03697477491764	6.60075706364169	5.58658649021304	5.66081077284836	5.17895202818742	-2.22676184053801	7.25253434522405e-11	9.89454758024848e-09
Merged-chr9-41207960-3	chr9	41207447	41208447	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1792.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	7.28886340639816	7.80637291184936	7.09999787776757	7.48232060411933	7.94422913976766	7.41574481741015	0.290721318287278	0.336836442261554	0.726861060604748
Merged-chr7-90047814-2	chr7	90047352	90048352	+	724.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	18693.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.58088318609737	5.5734372255615	5.30143564119375	5.55617922556232	5.64567166694736	5.71655941328058	0.255312943647419	0.438211245217403	0.80042765272094
Merged-chr6-38901372-4	chr6	38900877	38901877	+	960.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17609.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.70945008240842	6.64428592896084	6.47111266667757	6.71444561308162	6.98334565659947	6.62097433857538	0.273551325098223	0.312621315450567	0.707282970526745
Merged-chr15-64031516-2	chr15	64031016	64032016	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	28248.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.20524698285696	4.16626641986971	4.37745544644607	4.34681495152249	3.92009161591118	4.56197580219789	0.119397177344038	0.812469556777891	0.955587126909998
Merged-chr3-21934330-2	chr3	21933830	21934830	+	665.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-142322.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.29319233311877	3.15240832702664	3.23244268135335	3.29981924226887	3.03616916219753	3.41410381398321	0.103397839557526	0.872390312713457	0.970261003150518
Merged-chr10-80656593-4	chr10	80656105	80657105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145361, exon 1 of 9)	5' UTR (NM_145361, exon 1 of 9)	466.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	4.60834803705068	4.14676183972744	4.57480671387787	4.9031282057871	4.18121938544347	4.60136134075349	0.333192257832459	0.505966428710376	0.838203647443267
Merged-chr7-92876232-4	chr7	92875748	92876748	+	733.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	MIRc|SINE|MIR	995.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.38284392122639	6.76114422744261	6.63035944831321	6.95810104170927	6.93847968180312	6.73837634649828	0.446739179640248	0.0973298943997799	0.415996807746912
Merged-chr8-13757668-4	chr8	13757160	13758160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357247)	promoter-TSS (NM_001357247)	4.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	6.90835646402788	7.22571887831751	7.10474995044204	6.96483080497152	6.59562847444136	6.69205130256539	-0.50322685755731	0.0603610011403613	0.31808043885421
Merged-chr13-34644637-3	chr13	34644091	34645091	+	566.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	8090.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	3.3893736042505	3.45933354649998	4.01802277285554	3.25711755376673	3.08683609166677	3.25617239272509	-1.72798270813404	0.00944425496773405	0.0966233330081415
Merged-chr11-69880353-2	chr11	69879853	69880853	+	554.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153143, exon 1 of 1)	5' UTR (NM_153143, exon 1 of 1)	632.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	4.73768111121038	4.7030274666015	4.66258026633816	4.65892738451091	4.44404511444122	4.64884072616351	-0.295373367335226	0.47279365714007	0.820550293768681
Merged-chr18-36238890-5	chr18	36238576	36239576	+	816.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41916.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	3.79077550875423	3.54691248431436	3.8392936206836	3.73997930301477	3.39627017772184	3.81119687293228	-0.250392980545154	0.664664220614546	0.907719555092983
Merged-chr1-172357683-4	chr1	172357141	172358141	+	804.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	16431.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	3.49999239976247	3.18244404773288	3.37516632374764	3.16423538994039	3.16920999305171	3.2789088688034	-0.63961313157906	0.310375992325206	0.705829393476587
Merged-chr6-30693807-4	chr6	30693319	30694319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031998)	promoter-TSS (NM_031998)	-70.0	NR_130775	83922.0	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	5.13828275151244	5.37692692457001	5.27185288634198	5.32531766433853	5.30940746778418	5.51259323771455	0.22084994561868	0.525424901816993	0.848999112257332
Merged-chr9-47528661-4	chr9	47528158	47529158	+	860.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1512.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.04447522100243	5.11521408710852	4.94484581601332	4.81126267883233	4.60812375163695	4.6584826640476	-0.780709980852179	0.0451111278049697	0.267980775497674
Merged-chr3-97666365-3	chr3	97665858	97666858	+	822.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 5 of 7)	intron (NM_182997, intron 5 of 7)	8146.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	4.03239915871696	4.04451251661924	4.34503092955426	4.08516475260965	3.82218856863047	4.24494644939391	-0.254500339651077	0.616946046835202	0.888607350961806
Merged-chr11-20216588-2	chr11	20216088	20217088	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 2 of 5)	B2_Mm2|SINE|B2	15176.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	3.69998718785644	3.66505622585007	4.09341131942979	3.74408086798941	4.06444098358437	4.20306945973291	0.581834850614231	0.290018296710265	0.687712807998511
Merged-chr5-135470446-3	chr5	135469868	135470868	+	792.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	74754.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	6.14455134363771	6.11548400769131	6.3162967835583	6.22972685471982	6.22221720633988	5.83923358494898	-0.113770782912407	0.704777125241291	0.922525406447857
Merged-chr8-119438354-3	chr8	119437762	119438762	+	915.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1100.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	6.22633990905354	6.19299914507968	6.15044017040419	6.2906757704035	6.55941635913284	6.16739423155236	0.282706139418207	0.326478060086047	0.71871363873492
Merged-chr11-97659667-4	chr11	97659175	97660175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3737.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	9.19669747051769	9.09312714486047	8.66214730183949	8.93158956477896	9.27306292358276	8.62323196466604	-0.0437342037950858	0.869207257005761	0.969777123267097
Merged-chr9-120116233-4	chr9	120115737	120116737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5838.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	5.86643493216098	5.42458591655131	5.38258900123266	6.02829526857303	6.01250664185837	6.01637074692697	0.770617222611821	0.0208693029551631	0.16602858402268
Merged-chr19-29363802-2	chr19	29363302	29364302	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1931.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	2.56118931399931	2.49037177271366	2.4894778597516	2.64384399280765	2.47608812888609	2.74974413670399	0.628250659732751	0.422364678383018	1
Merged-chr4-55509270-1	chr4	55508770	55509770	+	737.0	f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	23205.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	3.74278109736821	3.94153635122422	3.61435714786193	3.24932126757993	3.28470848132061	3.27996972326039	-1.9345372660134	0.00169197352688109	0.0271343188105393
Merged-chr5-64968998-3	chr5	64968488	64969488	+	580.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1087.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	4.58690640070045	4.16127982534091	4.53431493399483	4.16430275559324	4.32836333692334	4.16333419748468	-0.555576675964866	0.243475537003489	0.640685382593414
Merged-chr19-44408373-4	chr19	44407899	44408899	+	900.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-690.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	6.75837061413447	6.94536755053124	6.85289375074499	7.52094532023823	7.59463602478803	6.73274338114626	0.744041762618437	0.0155101507447914	0.135835030330765
Merged-chr6-83013705-3	chr6	83013218	83014218	+	810.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	19753.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.27353189960823	4.08875088440845	4.49913937990167	3.53479551780715	3.51612640183463	3.71843991603676	-2.28941016006938	4.36409555875346e-05	0.00141130067334923
Merged-chr17-46383593-4	chr17	46383090	46384090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207671)	promoter-TSS (NM_207671)	-176.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	7.01217235393758	6.77011535770159	6.81758494364777	6.93251555046709	6.65914477574884	6.46892588663318	-0.258115613740373	0.347065792318152	0.735199858635661
Merged-chr17-28314389-2	chr17	28313889	28314889	+	585.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_028296, intron 1 of 7)	PB1D9|SINE|Alu	859.0	NM_001163820	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	3.79552602416466	3.72035614322446	3.51640410142974	3.48997085246663	3.55195392838285	3.53169112794509	-0.574309502735987	0.310104409044804	0.705663939416346
Merged-chr1-9773341-4	chr1	9772887	9773887	+	883.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24743.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	3.68808004592827	3.89031314672419	3.78301216337771	3.97594914980519	4.11796408682285	3.85389484264119	0.629874325797028	0.225783986258949	0.620701256044383
Merged-chr7-42505176-2	chr7	42504676	42505676	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 1 of 6)	intron (NM_001309388, intron 1 of 6)	577.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	5.41134931502925	5.93917330852287	5.66040414729056	5.97351352621883	6.01792719099685	5.72319654923871	0.402017836050222	0.235771040093797	0.632125090802053
Merged-chr2-102946232-3	chr2	102945735	102946735	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44570.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.43653814051083	5.2855114359798	5.41380559478244	5.09101029817123	4.96306146137503	5.02491051929586	-0.725356099585119	0.0403618107890852	0.250292558662856
Merged-chr7-138846666-4	chr7	138846208	138847208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027115)	promoter-TSS (NM_027115)	322.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	7.66023875642189	7.27712804317454	6.89266420582166	7.61258556944379	7.03688824090158	7.05400024539779	-0.0840170631065368	0.791176674922178	0.949694766870106
Merged-chr19-46521050-2	chr19	46520550	46521550	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	19402.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.26489516283047	4.84590177765236	5.30393078451481	4.78025614508511	5.03854747089076	4.78638240209789	-0.566815840024039	0.162302731200256	0.535759338981669
Merged-chr13-4756577-4	chr13	4756080	4757080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-147416.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.37035886129144	4.93891351294757	4.72826391424136	4.44688739935268	4.4446144270191	4.18018204810161	-1.58951759764683	0.000615406718302537	0.0123628107717329
Merged-chr1-80722851-4	chr1	80722359	80723359	+	954.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35694.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.08980664157169	4.20484038109775	4.17424287875256	4.26279726120686	4.33016086326142	4.28818416283491	0.380370166108068	0.405353801630417	0.780134157220244
Merged-chr2-156850678-4	chr2	156850179	156851179	+	915.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 2 of 3)	intron (NM_001291124, intron 2 of 3)	10672.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	3.71495384561379	3.38520107371341	3.53601570292336	3.59314644090924	3.4928554716733	3.19008301439873	-0.406143099854534	0.517459960473002	0.844565787078276
Merged-chr14-32083793-2	chr14	32083293	32084293	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001047433, intron 1 of 1)	B3|SINE|B2	1493.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	3.09718633909692	3.01998196611776	3.21556537771836	3.32102924574568	3.41749016215192	3.22972155051107	0.934621109074998	0.14086266692489	0.501450363202116
Merged-chr5-9161722-4	chr5	9161228	9162228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	48.0	NR_152860	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	7.64016704620707	7.3603585633688	7.57033273646236	7.69748410934173	7.35272963413057	7.74316298522808	0.110191181404896	0.657302169787062	0.904798742244684
Merged-chr12-113115451-3	chr12	113114917	113115917	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 2 of 19)	MTE2a|LTR|ERVL-MaLR	17139.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	3.67756444698103	3.93807692275074	3.72554255519908	3.65316507047472	3.48620068465927	3.52314817744214	-0.804881954707992	0.150362935621613	0.517246479850651
Merged-chr1-151581823-4	chr1	151581316	151582316	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	HAL1M8|LINE|L1	10443.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	5.66013418606638	5.54035776499622	5.62913643136251	5.37806409391745	5.39537556096708	5.4679441195694	-0.379140077874769	0.242094990274786	0.639162163852051
Merged-chr11-69062275-2	chr11	69061775	69062775	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028005)	TTS (NM_028005)	2500.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	6.08502994582449	5.99537115769712	6.03288219762537	6.21138669476506	6.75506006209106	6.46028583116837	0.772635487070798	0.0103737591773955	0.103078547125952
Merged-chr4-45108712-2	chr4	45108212	45109212	+	646.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	-599.0	NM_001099675	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	3.8996202883865	3.77878295565369	4.17354035219078	3.85336167186	3.62554402479696	3.77440297616224	-0.640729448001206	0.234348903233691	0.630452522567377
Merged-chr8-120120758-2	chr8	120120258	120121258	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	RLTR31D_MM|LTR|ERVK	6606.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	3.7057126328523	3.71715921352246	3.89434845230218	3.97022734228394	3.72174037799845	3.96302285296323	0.366623855429803	0.486887278439837	0.828078584425271
Merged-chr10-44686850-4	chr10	44686364	44687364	+	881.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-228116.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.8739619377698	5.72041234886317	5.77617359035075	5.82034567618154	5.86696401759427	5.78657728385519	0.064324807898998	0.831712729858621	0.960478468368024
Merged-chr8-122428362-3	chr8	122427828	122428828	+	729.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	4612.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	4.64043715181441	4.56906753723486	4.85886320746998	5.0299873549907	5.01035035884536	4.92413014187024	0.693673930523556	0.0761880140848988	0.363369438179621
Merged-chr6-13690575-4	chr6	13690077	13691077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12611.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	5.10207393597067	5.34354992629705	4.98515057709345	5.00837159106979	5.27358707934242	5.38000388275954	0.132905727829145	0.724018664943643	0.929178878081464
Merged-chr8-71558430-2	chr8	71557928	71558928	+	986.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100462, intron 1 of 3)	intron (NM_001100462, intron 1 of 3)	443.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	4.71592495503902	4.8479805727206	4.6163070857732	4.69057407492245	4.66859696008636	4.64172419873654	-0.161784778323794	0.688854134964416	0.917235946766438
Merged-chr11-61579660-4	chr11	61579093	61580093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010148)	promoter-TSS (NM_010148)	94.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	4.44680388144624	4.56276065532217	4.68882635007143	4.80686875262396	4.31256179681321	4.55583580579742	0.0135270648531684	0.97580881650475	0.994547767716175
Merged-chr9-120068335-3	chr9	120067882	120068882	+	992.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-86.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.52168528382846	5.13610001298865	5.28902937064183	4.37270980927527	4.48191035505559	4.40786963321989	-2.04894037137142	1.0370853598351e-06	5.58897659463465e-05
Merged-chr10-94828383-6	chr10	94827905	94828905	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	116173.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.66189572072274	3.50057062196159	3.0187615543715	3.36326317243451	3.1334775157602	3.57288160093817	-0.203260373672808	0.776260349010544	0.94480820353868
Merged-chr11-106085216-8	chr11	106084713	106085713	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	CpG	311.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	7.99823249590455	8.00618891561946	7.9545777370985	7.74208898278344	7.87187360721027	8.01076674662014	-0.158508350205329	0.463691683925379	0.816038286358001
Merged-chr12-73890153-2	chr12	73889653	73890653	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	-11171.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.38835312624733	3.71870485507552	3.74491283518423	3.62387106143357	3.56804492517891	3.71400292086237	0.0299261328981074	0.958176093221718	0.990000537228272
Merged-chr10-127120648-2	chr10	127120148	127121148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 1 of 13)	intron (NM_177614, intron 1 of 13)	512.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	4.914676540535	4.78203939881704	4.91875399369416	4.99737044291595	5.11343497110074	4.91011586021647	0.321262842055421	0.395802032499474	0.773144649859171
Merged-chr14-121928573-3	chr14	121928069	121929069	+	703.5	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12795.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.23747118476564	6.39708806863737	6.22141373991438	5.84907327588844	6.02033414423325	5.87263869264024	-0.628676890126096	0.0303100949993676	0.210363031504494
Merged-chr11-110697620-2	chr11	110697120	110698120	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218280.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.7648089135391	4.78277149124426	4.71346041412085	4.58124550049269	4.37093948387697	4.39987117024298	-0.736045355469823	0.0780022673759049	0.36877344680763
Merged-chr8-71489135-2	chr8	71488626	71489626	+	783.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_032544, exon 2 of 9)	exon (NM_032544, exon 2 of 9)	1023.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	3.98971537157732	4.13054579253734	4.26736197678003	4.09069268799785	4.13355565681069	4.01143983423996	-0.125463323028685	0.795146775095823	0.951004454064308
Merged-chr15-103332931-2	chr15	103332431	103333431	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	1407.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	5.47387385950958	5.68109800615568	5.94365580654862	5.76875082139312	5.73148508443737	5.98214759293636	0.221420664787994	0.501645400584702	0.835833270717604
Merged-chr19-29210163-4	chr19	29209663	29210663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41640.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	4.79528323783017	4.18122664268086	4.51107281939406	4.6849965783669	4.88200861486471	4.53564675188403	0.457462446982296	0.326313336464228	0.718645918705085
Merged-chr4-155086452-4	chr4	155085947	155086947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026395)	promoter-TSS (NM_026395)	-130.0	NM_001081100	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	5.66771346242468	5.65374152013019	5.90401468148151	6.05004485678742	5.77613682572479	6.17575128617273	0.471131299457113	0.139923016266311	0.499868788359785
Merged-chr10-37137153-4	chr10	37136661	37137661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008538, intron 1 of 1)	CpG	1765.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.47343050504883	6.3870663862006	6.81501408043919	6.33781963210301	6.07964871486412	6.39802164684476	-0.476522103537432	0.106242621593256	0.43518946171409
Merged-chr11-21540276-4	chr11	21539757	21540757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-29077.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	3.36528798636984	3.48802953660218	3.404414711383	3.60515176311695	3.51173365754819	3.36031916928992	0.29215712816795	0.61865364066261	0.889497316944952
Merged-chr11-86822996-4	chr11	86822506	86823506	+	911.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-15346.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	6.30315880417282	6.14037683496888	5.86478268204909	5.87016051955528	5.93506451886874	5.84971750129321	-0.411507026532002	0.1787216265151	0.560052314204364
Merged-chr19-25074994-4	chr19	25074498	25075498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 4 of 47)	intron (NM_028785, intron 4 of 47)	75469.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.30252555048015	4.00606337012245	4.2566137435253	4.19304850426781	4.1484551113923	4.36675873139155	0.112524079137359	0.812668297131161	0.955699295706164
Merged-chr11-97686817-1	chr11	97686317	97687317	+	797.5	f1_c57bl6.idr	intron (NM_001085500, intron 2 of 2)	intron (NM_001085500, intron 2 of 2)	865.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	3.18592569329733	3.04494729457708	3.1842501526827	3.48783284233324	3.34764900406596	3.25736101130974	0.959496943975677	0.127489515004518	0.477271790294292
Merged-chr15-78248614-4	chr15	78248124	78249124	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3813.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	5.99343369475225	5.56114933067828	5.71685680545828	5.50594098949498	5.11216976976781	5.31624843727831	-0.863792071212663	0.0152048239336713	0.133978925116268
Merged-chr6-97804631-4	chr6	97804137	97805137	+	833.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2421.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.01649294018998	5.77705994449463	5.91425716333453	6.50151497252237	6.40698347604835	6.32602721260032	0.862171007262296	0.00259849782920828	0.0377602491759031
Merged-chr15-97821070-4	chr15	97820578	97821578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	URR1B|DNA|hAT-Charlie	-6215.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	5.86367375054523	5.25075345467166	4.84375027377434	4.97701372040184	4.84552053426975	4.69284857973446	-1.13979140210647	0.0118033558927742	0.112875949560505
Merged-chr4-123904943-4	chr4	123904442	123905442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019660)	promoter-TSS (NM_019660)	-71.0	NM_019660	56309.0	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	6.63314276460017	6.5685581439353	6.3834762407075	6.52281326984667	6.25769795858713	6.49880645312571	-0.18537975835737	0.50096154700704	0.83533412964393
Merged-chr18-62252487-4	chr18	62251989	62252989	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-71715.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	4.73457627404151	5.21601188064104	4.70715121986557	5.37782856713641	5.23454843085032	5.0896472158383	0.671453916410855	0.0995147463241174	0.420689072404469
Merged-chr13-5778391-4	chr13	5777937	5778937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	79655.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	7.91858251000948	8.06200225844712	7.46564751132731	7.59967411352035	7.7361167594984	7.57452781198969	-0.298529222371245	0.242664524622364	0.639785480506262
Merged-chr9-89200495-4	chr9	89200006	89201006	+	926.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	1233.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	6.42721633342381	6.67087177473157	6.46422161591123	6.47436209482951	6.57563798200262	6.35193650783588	-0.0826821898249935	0.761391270348105	0.941257991447882
Merged-chr12-52513480-2	chr12	52512980	52513980	+	672.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-2597.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	3.43564458920182	3.52852586263895	3.39201313933548	3.5779766312579	3.62597151061625	3.52043023793345	0.443801412908822	0.437334409369095	0.7999265985569
Merged-chr11-117111263-2	chr11	117110763	117111763	+	659.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-3909.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	4.70986765858113	4.41566792917944	4.61067800041884	4.72407502469325	4.64230648684508	4.63659371748366	0.204766902836694	0.623691241912679	0.891552110895095
Merged-chr15-80083451-4	chr15	80082957	80083957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-51.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	7.46236486045399	7.5051592451636	7.34913908579586	7.74655250155006	7.80959618281787	7.56371797584611	0.396998493551934	0.0807467897875029	0.375980911283634
Merged-chr4-53183928-2	chr4	53183428	53184428	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24033.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.5776418550402	2.59891049753824	2.75595352491039	2.52226412236295	2.43167153771675	2.64784266720535	-0.647590590766971	0.406139078760771	1
Merged-chr18-54920549-2	chr18	54920049	54921049	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	69631.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.94904845597087	4.08909719461739	4.11940933715964	3.73221281602309	3.65244585713462	3.80421819966735	-1.03719702955559	0.0450420640468954	0.267715710880951
Merged-chr13-37778303-4	chr13	37777786	37778786	+	955.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47752.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.16830867005609	7.37174256158164	7.31382202985512	7.22640478964769	7.2132864795709	6.83083894787192	-0.260656099653993	0.306498095494643	0.702719429348568
Merged-chr1-125447804-3	chr1	125447286	125448286	+	883.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12059.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.1985842393825	3.25349094346831	3.55695781018356	3.57871506569236	3.70154545629961	3.77726310120806	1.30375297138821	0.0297651881157921	0.207811862119385
Merged-chr18-34885000-4	chr18	34884460	34885460	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23753.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.03672023229489	3.89674664876368	3.69042332073955	3.93905524101038	3.84104500201987	3.58869032175424	-0.266973039722482	0.627932142957425	0.893454419414385
Merged-chr11-117824732-4	chr11	117824241	117825241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009387, exon 3 of 7)	exon (NM_009387, exon 3 of 7)	-1178.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	6.87693848816679	6.77168037195196	6.14715201900844	6.81995158189321	6.87082323603905	6.27870944206071	0.0696718729415434	0.836124546790895	0.961948623063023
Merged-chr4-117550282-4	chr4	117549783	117550783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080469)	promoter-TSS (NM_080469)	-41.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	7.10142126387722	7.39160345225494	6.66963083863881	7.11606792374	7.12575273306098	6.39715409443524	-0.24832572650193	0.459222907956573	0.81350236795577
Merged-chr4-135942896-2	chr4	135942396	135943396	+	823.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-3552.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	7.36642334882294	7.10818594052534	6.51168509911141	7.02964418329453	7.15551545169226	6.73608261478758	-0.0952247800536739	0.76393186878155	0.941845689312641
Merged-chr2-129618992-1	chr2	129618492	129619492	+	637.0	f1_c57bl6.idr	intron (NM_001355158, intron 6 of 8)	intron (NM_001355158, intron 6 of 8)	23530.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.73952234815281	3.29846912241107	4.05606382142182	4.25931307079716	4.09751096786292	4.45828898947721	1.63995159404835	0.00740487891874276	0.0814675077014231
Merged-chr9-56924762-4	chr9	56924272	56925272	+	942.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175483, intron 1 of 1)	intron (NM_175483, intron 1 of 1)	3599.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	4.72722433139119	4.6438377954295	4.03325778146993	3.7773613220414	3.55298025392991	3.8305969912105	-2.39411069035785	1.81695289493877e-05	0.000672830513938873
Merged-chr1-170934148-2	chr1	170933648	170934648	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6565.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	6.29813118069712	6.26318582311703	6.0699819326756	5.6376474321954	6.13056296332291	5.81529368156919	-0.564151808300073	0.0770854511753438	0.365994676965629
Merged-chr16-30065315-4	chr16	30064839	30065839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008235)	promoter-TSS (NM_008235)	-18.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	6.80540773591287	7.13063306285195	6.6520693218952	6.85599820655017	7.20892410792631	6.60516660416602	0.0619092155960414	0.836781176058382	0.962001762335242
Merged-chr9-21003458-3	chr9	21002973	21003973	+	988.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357899, intron 3 of 8)	intron (NM_001357899, intron 3 of 8)	736.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	6.59373978718894	6.88628588956008	6.90985982253061	6.64836222079736	6.6625343408163	6.67026315397588	-0.220692837629683	0.398835952486932	0.775429226349887
Merged-chr12-24831099-2	chr12	24830507	24831507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	-592.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	2.86785579834175	2.56946202218633	2.72387829807696	2.44220141776679	2.37333412860892	2.33771027252494	-2.17044188807718	0.0132864411317702	1
Merged-chr11-70585369-2	chr11	70584869	70585869	+	915.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	22488.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	3.64999694065738	3.31949443358997	3.79899007699417	3.1820385799021	3.01140129578596	3.68014429284593	-1.05079036456426	0.131054845204902	0.483837071958386
Merged-chr12-86836878-4	chr12	86836370	86837370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47944.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.86042609911491	5.77562467056311	5.5809218072307	5.81668887816944	5.87834753596087	5.88315970987893	0.190012525658396	0.537734386533622	0.854779024899439
Merged-chr13-107754760-2	chr13	107754260	107755260	+	955.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	67363.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	2.54484970534539	2.60025898880522	2.75616253438962	2.6626281114367	2.4645186363201	2.51679538780196	-0.478059190690501	0.540024344490326	1
Merged-chr9-14841692-2	chr9	14841192	14842192	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-18518.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	2.87813400781149	3.05803052384165	2.91242158643482	2.8263753419982	2.66532012062954	2.73501202175472	-1.09372152144761	0.133233567013506	0.488352467227564
Merged-chr17-87986384-2	chr17	87985884	87986884	+	603.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	11334.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	3.63372517550715	3.5976066711033	4.03291988728929	3.6835281159554	3.63676024788749	4.01230593132165	0.0648258420616313	0.909231915329437	0.979384717565381
Merged-chr5-24827351-4	chr5	24826856	24827856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	15005.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	4.75556945168642	4.31045925635344	4.5556055979878	4.14965324579554	4.48963781523235	4.58182827341852	-0.338352651846076	0.470409141164941	0.819495618343931
Merged-chr14-64654018-1	chr14	64653518	64654518	+	656.0	f0_balb.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	1487.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	5.26902693036759	5.70033145205896	5.5646798405201	5.38130684514277	5.18412551059082	5.51686171928514	-0.322256290365656	0.368012941897066	0.752973180439492
Merged-chr8-106060022-2	chr8	106059529	106060529	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_010901, intron 1 of 9)	CpG	426.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	7.53291346914139	7.53877360514696	7.63055961207773	7.5906810941773	7.66231468193249	7.6690894394653	0.109895387001829	0.614047474510495	0.887397090141363
Merged-chr15-31565303-4	chr15	31564802	31565802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3531.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	4.81900679683737	5.35829045320917	5.22300844199373	4.40787545297866	4.63163029598422	4.69547969263081	-1.27910269589985	0.00270702435036548	0.0389362285471411
Merged-chr18-38992366-2	chr18	38991866	38992866	+	988.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-779.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.52015040661724	3.50918065487715	3.23811536483958	3.09423823871357	3.04419276722161	3.06450652870289	-1.57661260918028	0.0164359759516739	0.141647300568294
Merged-chr15-100057974-2	chr15	100057474	100058474	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	19310.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.41043665737816	4.12606955183573	4.28456121974889	4.877630180174	4.42329753311919	4.65403043872433	0.961289102059166	0.036450356540078	0.234929886177968
Merged-chr17-45627008-4	chr17	45626514	45627514	+	961.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24912.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	4.93002841393802	4.70765711776004	5.11219848490073	5.21773634951029	5.27906470477539	4.96666473889011	0.539880280145272	0.163223196573193	0.536951138431397
Merged-chr9-90257556-4	chr9	90257039	90258039	+	947.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	13230.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.45390089047701	7.22861712057566	7.17923918116803	7.59244691533818	7.63236863030321	7.07834021915817	0.253233356837615	0.345307988914486	0.733676961611706
Merged-chr1-152528943-4	chr1	152528456	152529456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 14 of 17)	L1MEd|LINE|L1	96261.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.27763449372734	7.27585739027472	7.04996168498761	7.14984233227385	7.30228085419022	7.01193165086296	-0.0651051340330123	0.791740766984338	0.949809355728628
Merged-chr5-100643473-3	chr5	100642966	100643966	+	674.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30790.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.81521292395791	3.54427336034414	3.46069863053922	4.29292687696798	4.32750435635946	4.32189382778998	2.1285026676823	0.00015048921942482	0.00398533003497786
Merged-chr2-48689283-4	chr2	48688783	48689783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124826.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.24349586197653	3.18712953380721	3.5056938573638	2.94381268024677	3.24037360722169	3.36962074196753	-0.486938844856068	0.467003977593338	0.817728681977829
Merged-chr16-92423594-4	chr16	92423093	92424093	+	902.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-23515.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.93420639857367	4.90817272195413	5.04558278416942	4.46154832019188	4.24241139624894	4.32838071167771	-1.49338236495001	0.000401319968856945	0.00881315174680621
Merged-chr9-78428369-4	chr9	78427865	78428865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14872.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	7.14111092450019	7.30619220866652	7.47353668117788	7.1281722220922	7.33854630939545	7.25494075370986	-0.0933037989364128	0.70252774138288	0.921908665861083
Merged-chr14-25378194-5	chr14	25377763	25378763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-80922.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.49775696118237	7.9993232217228	7.50636147106347	7.33919071772955	7.19484177887971	7.01348845392207	-0.738354777252641	0.00606028970581197	0.0702727094975123
Merged-chr2-73529397-4	chr2	73528909	73529909	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	78.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.47599448664356	6.92198431903915	6.92327596076155	6.76328901537711	6.53144025705018	6.55089498285053	-0.263951375980755	0.351829458948137	0.739473733111637
Merged-chr11-34010008-1	chr11	34009508	34010508	+	1000.0	f0_balb.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16815.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	6.6021532454828	6.63399838654473	7.18966598633712	6.82380384840796	6.69913562252987	7.07313760207705	0.0627320373326471	0.833732939339365	0.961104751385188
Merged-chr18-54991289-4	chr18	54990772	54991772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	-1092.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.6537815450863	7.58403441609955	7.18611354421157	7.54213792013102	7.86995917605712	7.3060782882372	0.153036132908374	0.578677147829509	0.872437129840066
Merged-chr3-144568965-4	chr3	144568482	144569482	+	923.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	1234.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	4.59486144687159	4.75719397899627	4.69823611137917	5.00347105054743	4.97269656663559	4.95435960740121	0.658462522682831	0.088912212056365	0.395986048321256
Merged-chr19-8953752-4	chr19	8953249	8954249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-83.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	6.88010934885527	7.18765338864117	6.9674472251795	6.67704698336904	7.03374034276182	6.9708895615372	-0.177558284652635	0.503644742120995	0.837140822864962
Merged-chr4-133153831-3	chr4	133153322	133154322	+	791.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	23189.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.8585460799873	5.92360744103404	6.01664137979422	6.44425250730389	6.41060730900767	6.34916245017131	0.802152137237211	0.00401759505933453	0.0520842581384828
Merged-chr5-120165240-4	chr5	120164726	120165726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-25963.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	5.65448418983345	5.51152456783269	5.82900458362963	5.6131178439983	4.96715915640338	5.84400361571707	-0.281369495469336	0.480325450405287	0.824543506620807
Merged-chr9-118706351-4	chr9	118705845	118706845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-5347.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.9281840902882	6.86607007945453	6.74919341557833	6.6698278602108	7.04468939764643	6.98240532947111	0.0886031412498577	0.735207767254655	0.932617455907478
Merged-chr11-49997430-3	chr11	49996930	49997930	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27901.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	2.95481920183373	2.96165087839012	2.99466716827555	2.81072580968693	2.8207185883417	3.12310746565712	-0.241604134325026	0.728969124371758	0.930478966998914
Merged-chr13-23431541-4	chr13	23431061	23432061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	-544.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	6.05098578920858	5.78947053977766	6.37844541333201	6.52677561042922	6.27272057642825	6.45564565273636	0.562294218208264	0.0711341212480632	0.349837375442467
Merged-chr2-60172109-2	chr2	60171609	60172609	+	806.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37827.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	4.86400942012907	4.50547856236515	4.56791565179026	4.39113882083553	3.92130529450343	4.33371829247145	-1.11998924493619	0.0200469722890329	0.161650205468151
Merged-chr7-140856383-4	chr7	140855902	140856902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018742)	promoter-TSS (NM_018742)	-19.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	7.77036261626654	8.04745527635241	7.96014404837394	7.90966109412348	8.05525574721863	7.9481195478482	0.0620671035980005	0.778739027891846	0.945520893795831
Merged-chr8-106577379-4	chr8	106576883	106577883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9760.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	4.13172095137359	4.11896781726177	4.12002346288567	4.22703115719876	4.24985889001319	4.45085965654303	0.50253342231217	0.277437689839144	0.674645776444206
Merged-chr13-23555609-2	chr13	23555109	23556109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145713, exon 1 of 1)	exon (NM_145713, exon 1 of 1)	577.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	6.81481463582584	7.10363299052956	6.96585718780699	7.14070035107853	7.59764237996792	7.41862169643243	0.652457144463579	0.0128932422766267	0.120279139460211
Merged-chr9-44418091-4	chr9	44417603	44418603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201372)	promoter-TSS (NM_201372)	-34.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	6.71233605171345	7.09402166142796	6.52215507941523	6.80506093978846	7.07550516724048	6.65179176566206	0.0873956875339482	0.768794745675652	0.942938240859946
Merged-chr4-129742417-4	chr4	129741932	129742932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-129.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	7.83631604283413	7.67069095952297	7.8620334691942	7.86687698010635	8.04914109644721	7.83732431069369	0.195436865392124	0.378134465274149	0.760495811314425
Merged-chr6-116128945-2	chr6	116128445	116129445	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	64429.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.86803495895302	3.83948221292339	3.51562526199933	3.81036399938571	3.89977595505118	4.10511752438958	0.564722398923368	0.305966758420501	0.702020471196356
Merged-chr12-98271225-5	chr12	98270727	98271727	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	2592.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.15772542507953	7.02683310134788	6.69109298685316	7.17770006951442	7.305220691345	6.76725049847353	0.199497293496085	0.485604772811963	0.827504186777075
Merged-chr11-79161301-4	chr11	79160900	79161900	+	889.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-14927.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	3.59918484858046	3.53025053245809	3.15453855212417	3.60168461023733	3.40679784538124	3.41574441741704	0.104602965801993	0.868678869245361	0.969708434868159
Merged-chr2-165926518-3	chr2	165925982	165926982	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-41644.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.56117564435379	3.3975918701454	3.51864807140289	3.29600099712747	3.22755635688952	3.37155772897227	-0.775031263600799	0.195546182916414	0.583294740566732
Merged-chr11-117939889-4	chr11	117939379	117940379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29487.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	3.1147636393566	2.75472502469815	2.92852051300902	2.74784619313715	2.76119391425354	2.88055822386133	-0.732892033122069	0.314207532692465	0.708637665307082
Merged-chr1-151948156-3	chr1	151947617	151948617	+	887.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	142203.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.2975457447405	5.50974673713862	5.48033843711051	4.89890373207757	5.29467081319465	4.8744518536138	-0.759617902775379	0.0476056930565059	0.276380399927416
Merged-chr11-90235417-4	chr11	90234919	90235919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14057.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	7.22307282072277	6.96659129443268	7.20872479784112	7.00425354552519	7.01642239849043	6.4690566526352	-0.409505728789018	0.14736083512807	0.512227670074211
Merged-chr10-58323399-4	chr10	58322900	58323900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359115)	promoter-TSS (NM_001359115)	-147.0	NM_001359115	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	6.40860952804343	6.30960408746915	6.14971919840006	6.27767067464776	6.1180304476957	6.31337856057778	-0.113844153085499	0.686631410694235	0.916801348262875
Merged-chr5-24752184-4	chr5	24751660	24752660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153076, intron 3 of 3)	(AGGGGG)n|Simple_repeat|Simple_repeat	5683.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	5.38144434560866	4.95888763604008	5.24068150200327	5.3931039365986	5.31295391349487	5.30456710310907	0.26818399355714	0.459596488155517	0.813817637131457
Merged-chr6-108783045-4	chr6	108782530	108783530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026011)	promoter-TSS (NM_026011)	-29.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	8.24045955674346	8.49031255210473	8.01954403771207	8.08405314814775	8.2761413055095	8.01498267535029	-0.192013796643656	0.418671449772751	0.788726823651631
Merged-chr7-5014356-4	chr7	5013889	5014889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011813)	promoter-TSS (NM_011813)	-136.0	NM_001360242	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	7.54260516345566	7.67165625837981	7.52487135077613	7.68235231229065	7.6499578564881	7.51103368168515	0.0524710377024136	0.814123915454455	0.956086866570707
Merged-chr9-21864653-1	chr9	21864153	21865153	+	777.5	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-12018.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	3.31781223172676	3.36113803315243	3.55067475313966	3.18875011459468	3.26267417126622	3.18210500178365	-0.779414419064066	0.209889269469925	0.601787200098326
Merged-chr13-20183293-2	chr13	20182793	20183793	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	L2a|LINE|L2	92786.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.03875855917389	3.0807229377475	3.37072817522229	3.05758813114367	3.06847252189342	3.22709100771572	-0.208252584890137	0.751705067984265	0.937974256145923
Merged-chr10-128259108-4	chr10	128258613	128259613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	4982.0	NM_133996	28194.0	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	4.57244476116631	4.54436993199999	4.53602691577042	4.33946430348458	4.42889039394281	4.24683773405414	-0.517014219312026	0.234800467073405	0.630945615851348
Merged-chr6-30468794-4	chr6	30468310	30469310	+	660.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7825.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	3.07351970218943	2.83444437131255	3.37457957674373	3.00727564321274	2.81531763289596	3.0082040876591	-0.742056588615849	0.302292068531014	0.698958713820873
Merged-chr8-120133735-2	chr8	120133235	120134235	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-11194.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	2.410856695697	2.58635606828143	2.59362129341514	2.32157805009905	2.42412392316005	2.47938524784726	-0.757419648875718	0.352746383089399	1
Merged-chr2-127080463-2	chr2	127079963	127080963	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	RMER15|LTR|ERVL	9806.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	7.84025213704252	7.7353649396587	7.72332425068092	7.85430492400062	7.83978681110863	7.68998358596229	0.0453381364361779	0.834556616900297	0.961319929864283
Merged-chr6-76268311-4	chr6	76267809	76268809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-974168.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	6.49336804603712	6.4262553872877	6.07382405177484	6.07509277854455	6.16474927447883	5.91533840316847	-0.486386554968658	0.105000395648739	0.432306361005943
Merged-chr2-49417187-4	chr2	49416698	49417698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34288.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	5.49683461700725	5.90818049110306	5.94984271935875	6.00339493139653	5.97776937947257	6.18085591814078	0.45040528175811	0.160502243571052	0.533200410550568
Merged-chr10-121599484-3	chr10	121598950	121599950	+	767.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-12656.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	2.91472018001148	2.87773343722782	3.05312153095499	3.32327466844854	3.47526072862112	3.35978502333019	2.01865595514601	0.00270204091759184	0.0388860803757606
Merged-chr4-122860210-4	chr4	122859721	122860721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007598, intron 12 of 12)	intron (NM_007598, intron 12 of 12)	23994.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.75086124263742	4.96615007412114	5.20048962676468	4.84524079562931	5.00032968892488	5.07353063202339	-0.00149905894398768	0.996957614691008	0.999299497707701
Merged-chr9-37236095-4	chr9	37235616	37236616	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	19622.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	4.42810323483182	4.39754805605997	4.6921339477354	3.70720897513425	3.56974691308247	3.96943458852893	-2.31578426775672	1.47186934816396e-05	0.000558719455848664
Merged-chr16-36665980-4	chr16	36665488	36666488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	89.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.93025252423395	7.58185535592201	7.33918864898758	7.67218095117582	7.67332900689943	7.28909300682129	-0.122213325104927	0.653166834606035	0.903237539244801
Merged-chr11-100861679-2	chr11	100861179	100862179	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011488, intron 3 of 19)	intron (NM_011488, intron 3 of 19)	1195.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	2.20832596664457	2.10234810234442	2.40942124302534	2.3231080191592	1.89032701362241	2.15793611859625	-0.750333987712281	0.457830136477894	1
Merged-chr8-71297004-4	chr8	71296510	71297510	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	24296.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.84562535774808	8.00745813705425	8.12610492620297	7.88053426132647	8.16407784085176	7.94709868826547	0.0183515626972259	0.935713191119396	0.985929127601148
Merged-chr8-120740738-3	chr8	120740194	120741194	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2055.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.272967349604	5.97845288750861	5.83577164844395	5.94737491654553	5.72489810027469	5.60820503311533	0.0706577212990543	0.847343646429234	0.964260590709442
Merged-chr13-41373041-4	chr13	41372517	41373517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-14016.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.36689211174547	5.43557574956016	5.59755565154802	5.65528922177099	5.57332436015342	5.68595023896896	0.326803624049676	0.313248444189094	0.707836272539716
Merged-chr19-4061329-4	chr19	4060787	4061787	+	977.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1840.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	7.06953579920771	7.10077976139507	7.14330846573874	6.80596479728124	6.99710198097624	7.21268518540706	-0.141604740521598	0.573436454873994	0.870156136738611
Merged-chr7-128032859-2	chr7	128032359	128033359	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	28481.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	3.49685013633284	3.48637739577666	3.39727995909374	3.65406132983936	3.4109087064603	3.68365332671412	0.430660122464994	0.457952273969928	0.8127221945248
Merged-chr8-70610865-4	chr8	70610377	70611377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2563.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	8.73682007838218	8.89411843989893	8.21248611572929	8.38166002659018	8.72646091725319	8.29458498321873	-0.230180174217478	0.389825254426013	0.769386586235922
Merged-chr6-134202378-2	chr6	134201878	134202878	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	166678.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.34280221135694	3.300412938341	3.43572690109009	2.92767233223811	2.89186452885367	3.05893677063752	-1.8554264715548	0.0064343347271606	0.0735221263358389
Merged-chr4-117128133-3	chr4	117127607	117128607	+	715.555542	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013807)	TTS (NM_013807)	1294.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	4.72624779290816	4.53802124144691	5.10220143532129	4.63716808422085	4.47927807132915	5.00964308944419	-0.1905039934028	0.67335746285746	0.91137087629305
Merged-chr14-17743857-4	chr14	17743346	17744346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	82886.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.39561406688049	5.56049766453843	5.01130948007611	5.20684000194406	5.37515314237309	5.22241947304519	-0.160882411761625	0.665598589841391	0.907855843812957
Merged-chr11-60220555-4	chr11	60220025	60221025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011480, exon 1 of 19)	exon (NM_011480, exon 1 of 19)	102.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	8.34423158656263	8.43542214818834	8.089258751579	8.48591876225536	8.46216308066416	7.9607628609535	0.0414076353365719	0.868473554049639	0.969652123135977
Merged-chr13-55570523-2	chr13	55570022	55571022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145382, exon 1 of 11)	5' UTR (NM_145382, exon 1 of 11)	598.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	4.42133431081663	4.14925385221594	4.15787648735808	4.39879382583545	3.8696335112333	3.80653840163496	-0.541382489659692	0.312903505637571	0.707540429021071
Merged-chr11-59450554-3	chr11	59450067	59451067	+	821.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356452)	promoter-TSS (NM_001356452)	522.0	NM_001205068	194952.0	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	4.19669294918686	4.12962867585682	3.97698866209384	3.69097325108272	3.93655945332815	4.14034829590555	-0.529344098526237	0.306483744242484	0.702705888262341
Merged-chr4-33240577-2	chr4	33240077	33241077	+	794.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8210.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.58061165153407	2.95640515139441	3.27359059317803	3.99327346815703	3.30696838154025	3.58231960600533	1.2922694337067	0.0750906231774881	0.360851318126043
Merged-chr1-106035123-2	chr1	106034623	106035623	+	588.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44717.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	2.07898268609889	2.05235682503436	2.13504044309742	2.26097647948077	2.05379474399364	2.40533775834858	1.12519228646216	0.216110344463342	1
Merged-chr4-136462774-7	chr4	136462261	136463261	+	832.071411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7000.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	6.03523863767563	6.03109000118995	6.43300044738538	5.81583893584553	5.29031140128901	5.61738483857242	-1.04151829801383	0.00251524876517181	0.0369246328956274
Merged-chr14-76110134-2	chr14	76109634	76110634	+	733.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	681.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	6.82216973591171	7.24506155628118	6.66288351923571	6.73128916865945	6.8823316467456	6.56318828568508	-0.316497129366695	0.276931503977786	0.674267233731847
Merged-chr8-103923297-1	chr8	103922797	103923797	+	571.0	f0_balb.idr	Intergenic	Intergenic	-178328.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	2.25408608484305	2.18214594138369	2.38185741659368	1.99470546554421	1.98243621182571	2.13437103374656	-1.90267688625795	0.0481354819656874	1
Merged-chr4-46390327-2	chr4	46389827	46390827	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-890.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	6.41142561932195	6.40629150418758	6.13345759354638	6.617297235296	6.70999706601547	6.3040773640552	0.378136494000276	0.189135735019422	0.574748833083779
Merged-chr1-162665705-4	chr1	162665197	162666197	+	952.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7478.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	4.21057336429433	3.88745701181518	4.22077685796267	4.05243613332636	4.00695508776545	4.19989350776019	-0.0786268549229236	0.873755602830774	0.970440430875665
Merged-chr13-9429658-2	chr13	9429158	9430158	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153133.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.14023170127027	6.28017930530397	5.82991866445675	6.45868784951276	6.64465749893918	5.86560772018751	0.451064845747123	0.191673889448932	0.578420955038145
Merged-chr5-36465008-4	chr5	36464522	36465522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024478)	promoter-TSS (NM_024478)	-163.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	7.47087281206781	7.83062819181688	7.41440396661858	7.74676878618265	8.04498663033314	7.5144745975766	0.294603168699339	0.26936417888434	0.666460750131431
Merged-chr9-110625010-4	chr9	110624493	110625493	+	776.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-600.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	2.8294773556405	2.84877032667848	3.02470421597399	2.92131271543112	2.7364885066915	3.09625974997448	0.0954068214308738	0.893371211815793	0.975237866709772
Merged-chr12-113026846-3	chr12	113026349	113027349	+	833.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	12341.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	4.53729502255224	4.19985188336141	4.6177061789085	4.60690555226578	4.33488434467158	4.75740258816767	0.275532057801166	0.549288210188635	0.860273914502926
Merged-chr8-83751494-1	chr8	83750994	83751994	+	603.5	f1_c57bl6.idr	Intergenic	Intergenic	-10183.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	2.14771141489101	2.44809933956996	2.47607986495836	2.41410739990348	2.30910805193584	2.61152776543136	0.514811091001693	0.556558454307179	1
Merged-chr7-4381842-2	chr7	4381342	4382342	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163014, intron 4 of 7)	intron (NM_001163014, intron 4 of 7)	15902.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	2.43720033310951	2.67574385921566	2.6233701049588	2.71104186961202	2.56481111317676	2.87847431914828	0.751125039688211	0.337767749257685	1
Merged-chr2-68879811-4	chr2	68879302	68880302	+	932.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	18361.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.83847917426031	4.14938219447506	4.1580566752435	4.20565057386281	3.86341717517981	4.58655867972802	0.522979222491441	0.331706137954508	0.723003238653287
Merged-chr17-21532236-4	chr17	21531695	21532695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3344.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	6.7711826789125	6.83924725733866	6.73070066530315	6.74863966416507	6.40203705078126	6.74283659783993	-0.238133754333301	0.373190049407414	0.757061648367557
Merged-chr18-35562635-4	chr18	35562121	35563121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 1 of 14)	CpG	463.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	8.4190001743568	8.6341110274164	8.44803392792937	8.17702070981184	8.28751930827419	8.45989286441702	-0.272250367718396	0.206169607356991	0.596809057329073
Merged-chr7-114525820-2	chr7	114525320	114526320	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 11 of 15)	intron (NM_011055, intron 11 of 15)	37152.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	4.32070832272525	4.2986673798848	4.52172674457316	4.22265240654691	4.31879470952369	4.8388527597717	0.25132023370046	0.599030933580699	0.880902871165758
Merged-chr2-103797428-7	chr2	103796945	103797945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111290)	promoter-TSS (NM_001111290)	195.0	NM_001111291	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	8.00976971585253	7.84618045438444	7.8037636287587	7.82367721416384	7.9627180776761	7.7921285847489	-0.0385013312854213	0.860787875515319	0.9676427717189
Merged-chr5-64809522-4	chr5	64809043	64810043	+	944.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6020.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.21541251299466	7.08778161317574	6.8692218010049	7.0179890890567	7.40491703417188	6.81873373395856	0.0692865325369417	0.806191858207478	0.954121451132953
Merged-chr6-115602494-3	chr6	115601995	115602995	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023290, intron 1 of 7)	intron (NM_023290, intron 1 of 7)	557.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	6.66276784488162	6.7472908296306	6.35926839037665	6.58552823687976	6.68452209215535	6.31657699686294	-0.0982472330147362	0.730461776204105	0.930884711548651
Merged-chr14-77908277-2	chr14	77907777	77908777	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MTD-int|LTR|ERVL-MaLR	4038.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	4.37097541139324	4.30568332734331	4.2148313333164	4.42101564461232	4.49380145842136	4.77590479573199	0.663309534095972	0.1382622877305	0.496960021384664
Merged-chr13-40866594-3	chr13	40866096	40867096	+	895.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023887, intron 1 of 2)	RMER16_Mm|LTR|ERVK	6828.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	2.8448962244905	3.03133179267211	3.07227750647921	2.77897469972461	2.66512698666795	2.66431128190703	-1.50164934384087	0.0447778576167431	0.266801000828784
Merged-chr5-67451113-4	chr5	67450580	67451580	+	876.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12818.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	5.52786929675861	5.66819496832486	5.73695735972356	4.89798716822252	4.96900841523833	5.2465560598057	-1.21408648547941	0.000615006494077938	0.0123577542524117
Merged-chr14-52244571-4	chr14	52244061	52245061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6989.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	6.32187021747363	6.28575765896443	6.71373739372934	6.37268578356122	6.37385539872434	6.77210998008122	0.107100215248015	0.721929398248659	0.928606209603791
Merged-chr8-116267260-2	chr8	116266760	116267760	+	667.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-237755.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.54182157105529	2.68543973222794	2.79432469584354	2.81378983835986	2.95119754641287	2.86748032841197	1.09226358507647	0.141450083655298	0.502183459290427
Merged-chr15-101373662-1	chr15	101373162	101374162	+	875.0	f0_balb.idr	Intergenic	Intergenic	-3537.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	4.53585934389163	4.5280884136162	4.53210204344555	3.9338826126873	3.70834606688345	3.96724126600306	-1.9396550894295	8.02590244499154e-05	0.00235479298534152
Merged-chr19-14641930-3	chr19	14641428	14642428	+	890.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43745.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	2.63072428703507	2.55839679730866	2.86708135788083	2.42011124290212	2.81525500317497	2.63937605200655	-0.268195864499398	0.742669955106337	1
Merged-chr18-41949368-4	chr18	41948863	41949863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029942, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1831.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	3.40196271817429	3.55401724797342	3.65999867736491	3.15189328174331	3.19413088485522	3.36541479096693	-1.20348279652013	0.051538782467636	0.289506169446617
Merged-chr4-129049216-4	chr4	129048706	129049706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9065.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.32369238394518	6.31728179616476	6.32826983689141	6.28080111152928	6.3113543300499	6.2486930310216	-0.0657991963878297	0.80694219369366	0.954399610026228
Merged-chr18-14682289-4	chr18	14681832	14682832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	CpG	582.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	7.55819867127802	7.96097010913075	7.69787013007829	7.47715496392056	7.53129165414759	7.66530984263727	-0.283862550019093	0.236945896292586	0.633412320506677
Merged-chr10-8869093-4	chr10	8868621	8869621	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	16949.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.89902241656156	5.5653570725898	5.69457672152465	5.4391025064941	5.65478193482632	5.59387027281617	-0.296046608033085	0.368723798743752	0.753594740654151
Merged-chr2-31173601-2	chr2	31173101	31174101	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 5 of 17)	B2_Mm2|SINE|B2	21285.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	3.37028818178371	3.16844952633756	3.60860321277815	3.55449287243784	3.3582336964769	3.23901567585996	0.0169608476434349	0.978647066348724	0.995160277495735
Merged-chr1-64198508-4	chr1	64198015	64199015	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77126.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.87709172209483	6.89974808855183	6.94948206168762	7.01214199171404	7.38544508154047	7.18801365678252	0.459227360803809	0.067027039356614	0.338444235860271
Merged-chr7-5064305-4	chr7	5063842	5064842	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	2199.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	5.49353074622951	5.366027578632	5.58371813102345	5.35564697183364	5.45301819081987	5.2931822134194	-0.198942101601633	0.554482397887309	0.862826181827127
Merged-chr5-121836433-4	chr5	121835938	121836938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306126)	promoter-TSS (NM_001306126)	-334.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	8.41096398330403	8.18012703138117	8.16908711639653	8.22042790849504	8.13571514804654	7.83019381368996	-0.255984555655241	0.268432129974202	0.665545312005167
Merged-chr10-79988653-2	chr10	79988153	79989153	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007725)	promoter-TSS (NM_007725)	53.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	4.4675952825036	4.35745483986939	4.21067113101266	3.9850755837205	4.05782122917243	4.18583915844799	-0.779997447277649	0.0979583182194353	0.417291460898387
Merged-chr2-131264172-2	chr2	131263672	131264672	+	929.8000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NR_149748, intron 1 of 8)	intron (NR_149748, intron 1 of 8)	1333.0	NR_149748	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	3.34492104725149	3.11422021368809	3.0347079660101	3.59883434028704	3.23735832028629	3.52189299203541	1.11664573520602	0.0914273501942358	0.402491241466694
Merged-chr3-87987065-4	chr3	87986568	87987568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007529)	TTS (NM_007529)	13288.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	2.64813831295681	2.35249816400905	2.66341489151211	2.5276715498925	2.34711832570419	2.35063093070423	-0.908658121381554	0.280848199376261	1
Merged-chr13-37677463-2	chr13	37676963	37677963	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148575.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.86886334435349	2.90746655764019	2.9936211732305	2.75506845991968	2.76804103905235	2.94937970164885	-0.497826590834807	0.479506167424782	0.824286199055476
Merged-chr17-46754388-3	chr17	46753876	46754876	+	885.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-2162.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	2.70453380191212	2.74461142853838	2.7616109862874	2.48274005108979	2.52192008544437	2.77431040355869	-0.8038124349005	0.29811805768049	1
Merged-chr3-38565075-4	chr3	38564577	38565577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-80261.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	3.38819277618908	3.40627798166346	3.18538546966137	3.56956001825845	3.45833309498995	3.43805757099486	0.582391325993916	0.334995303425814	0.725339338581532
Merged-chr11-69135873-1	chr11	69135373	69136373	+	641.0	f1_balb.idr	exon (NM_011786, exon 12 of 15)	exon (NM_011786, exon 12 of 15)	9496.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	3.35033756575974	3.29309271439217	3.66626499143775	3.52988905460875	3.2255171793506	3.31157919139727	-0.29917653819478	0.631592318267697	0.895227420941953
Merged-chr2-166995449-4	chr2	166994959	166995959	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	840.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	6.62232437882573	6.47983591606815	6.58791958421572	6.81711050420292	6.84792314412743	6.6637373032126	0.350517146134725	0.171452144401318	0.549523902443853
Merged-chr5-143817716-4	chr5	143817218	143818218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-54144.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	6.62642443774073	6.90931808637746	7.12068424642298	7.00163214510872	6.9712485943983	6.93297467777839	0.118004602265585	0.656274096951528	0.904602840326388
Merged-chr7-110679995-4	chr7	110679505	110680505	+	832.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	52348.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	3.86217144304247	3.81376629087922	3.82282772484865	3.8297605023056	3.93436941560198	3.94205629156939	0.218590721491223	0.666992550504444	0.908463623849139
Merged-chr6-87808774-2	chr6	87808274	87809274	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	MIRc|SINE|MIR	983.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	6.85545764821562	6.60712664329273	6.6536588811876	6.69270351272098	6.98872317246994	6.96604885734471	0.27652359058905	0.295385885437765	0.692253732023816
Merged-chr7-127992043-4	chr7	127991536	127992536	+	737.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023258, exon 3 of 3)	3' UTR (NM_023258, exon 3 of 3)	1831.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	3.67493774672466	3.64006175626402	4.15401061667483	3.83374628262843	3.76967219010677	4.17872889950091	0.302295414191006	0.592252204091984	0.878003422897225
Merged-chr16-57223150-4	chr16	57222654	57223654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	8312.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.5914295872606	6.13580822229265	6.03690323132982	6.69689350359197	6.94720596504934	6.52136561186768	0.726693336170872	0.0199483806765251	0.161120642528859
Merged-chr15-64311910-4	chr15	64311418	64312418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	755.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	6.94453672552394	7.03103202614863	6.88980469351913	6.90154848980236	7.26331854601407	7.00444291712967	0.17316108852543	0.497092515926349	0.833442633454308
Merged-chr3-105948491-3	chr3	105948008	105949008	+	934.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304719, intron 8 of 9)	L2|LINE|L2	-10990.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	4.7128090729537	4.39463380596238	4.71163961219685	4.84005383147007	4.85940861805274	4.43675086796933	0.296707276450284	0.49804893117527	0.833856267944725
Merged-chr4-141147132-4	chr4	141146619	141147619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-803.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	7.32937079322668	7.62350974792921	7.53021602314054	7.34001520967744	7.64172775818887	7.34668543844792	-0.061739353832855	0.801858646530527	0.953086016975963
Merged-chr8-90933145-4	chr8	90932655	90933655	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310530, exon 1 of 38)	exon (NM_001310530, exon 1 of 38)	906.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.57889386459006	4.4675395180602	4.27141665454524	4.26024336020766	4.29101864487684	4.34002212264637	-0.411090782319613	0.359021938429893	0.745307683821397
Merged-chr9-7765367-2	chr9	7764867	7765867	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	1202.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	4.8435706029631	4.91215258412775	4.59298278550653	5.02400973418991	4.96963091048602	4.86744963088015	0.348366226768678	0.376991956703275	0.759569389997973
Merged-chr7-12881752-3	chr7	12881187	12882187	+	935.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153802, intron 1 of 3)	intron (NM_153802, intron 1 of 3)	509.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	4.56165667485813	4.95479064747339	4.85300505689231	4.75797786929277	4.60531856151073	4.88187061921725	-0.127386595996943	0.7593645703774	0.940397410143401
Merged-chr4-141953046-4	chr4	141952546	141953546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 12 of 31)	MER2|DNA|TcMar-Tigger	-29946.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	7.88720675469348	7.63992822684544	7.60415274293648	7.74661702950851	7.8314013663232	7.6126802091259	0.0253413699346526	0.912554920097175	0.9803740348902
Merged-chr16-36709675-4	chr16	36709183	36710183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	15705.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	6.93518412777527	6.52069421234303	6.19923283613763	6.66538475827269	6.62222807742147	6.56035857019569	0.0277603475731307	0.927946006833193	0.983749507397008
Merged-chr12-69538701-4	chr12	69538204	69539204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44324.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	6.66952599824097	6.45153245930264	6.27248296228465	6.31990977307065	6.16172563384138	5.96811106206121	-0.524849786379229	0.0759248121851747	0.362681290436862
Merged-chr17-35025176-4	chr17	35024589	35025589	+	862.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023893)	TTS (NM_023893)	2927.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	2.72284535195213	2.98951168309251	3.02478338297705	3.00621187614692	2.73861296126423	2.98036447590333	-0.0329319052719626	0.963639511676269	0.991121100730027
Merged-chr11-50154398-4	chr11	50153887	50154887	+	890.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 10 of 20)	L1MB3|LINE|L1	-20464.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	5.43924077686958	5.39420862669495	4.70864476042111	4.60466629099374	4.61258662859665	4.34512399743263	-1.54874881203362	0.000655390417369852	0.013008999486763
Merged-chr2-73464482-2	chr2	73463982	73464982	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	B4|SINE|B4	-10593.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.94143745965361	5.8972613192971	5.6348453326695	5.85493341117206	6.19332211184076	5.57876873207527	0.137846483916713	0.687027626621267	0.916965854132552
Merged-chr14-50834182-4	chr14	50833694	50834694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 41 of 54)	intron (NM_009351, intron 41 of 54)	26278.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	6.94454004883471	6.78679461623902	6.85208718140652	7.02564061063062	7.00279437951689	6.820313713849	0.146901283369665	0.553626594865641	0.862371517196081
Merged-chr6-131277249-3	chr6	131276744	131277744	+	758.361145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	16000.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	5.31614255696471	5.40805221926301	5.82894633385877	5.56100035024213	5.62536186727648	5.6964739287845	0.19571018594521	0.571157621404005	0.869415936955243
Merged-chr8-31113313-4	chr8	31112835	31113835	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	1489.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	3.82105779183921	4.0666152177103	4.08565503404958	4.29639247625727	4.02563421479951	4.28867203895292	0.601802867123026	0.225071148965076	0.619959596921757
Merged-chr10-9897141-4	chr10	9896578	9897578	+	908.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	3962.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.66761227519915	4.42726751200126	4.71826964837213	4.43860120170082	4.73832257789807	4.66860377345335	0.0483787634298646	0.910118627052393	0.979782681765082
Merged-chr10-67097033-7	chr10	67096506	67097506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-18.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	8.49524248206728	8.43094381926706	7.96395326168208	8.24577278082605	8.1153995653049	7.6752017917099	-0.396950485140843	0.140985391371841	0.501651162936419
Merged-chr4-130829451-3	chr4	130828975	130829975	+	935.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36938.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.37791261828309	4.19798388823353	4.2125973799389	4.25522089873227	4.20006759168613	4.03744251516851	-0.262112465695782	0.576528868060744	0.871585692229598
Merged-chr2-109287038-2	chr2	109286538	109287538	+	975.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_139303, intron 1 of 16)	Lx9|LINE|L1	6300.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	2.91693847047376	3.27631277104916	3.09590615429079	2.95597734383032	2.93960181597079	3.2242200369214	-0.293769134678191	0.670642830759989	0.910053903576255
Merged-chr13-48895667-2	chr13	48895167	48896167	+	970.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 12 of 17)	intron (NM_001033268, intron 12 of 17)	-24782.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	2.97421753888028	2.95587648718747	3.21451642944917	2.81379606914204	3.0439607303201	3.0628712656476	-0.317126055049121	0.646841289797407	0.90114476203283
Merged-chr18-80710134-2	chr18	80709634	80710634	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	-1961.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	4.00502715575449	3.82007173202059	3.9973199980003	3.81301235921159	3.71149768897476	3.71388586325598	-0.619598861261704	0.234955923754502	0.631024470284135
Merged-chr11-98923299-3	chr11	98922797	98923797	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011799, exon 12 of 12)	3' UTR (NM_011799, exon 12 of 12)	-14399.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.17140869959103	2.86668242590197	3.06909530151571	3.28123023725718	2.85059550744472	3.41940572163755	0.683256362402682	0.342052991971268	0.731142095278512
Merged-chr9-105055007-1	chr9	105054507	105055507	+	563.0	f1_balb.idr	intron (NM_053159, intron 2 of 9)	intron (NM_053159, intron 2 of 9)	1739.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	2.79200374888477	2.7492304833904	2.70155700704017	2.92793597800998	2.82555418045827	2.90004612446583	0.682879210383379	0.337984881618897	0.727916294286144
Merged-chr1-156660463-1	chr1	156659963	156660963	+	618.0	f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	intron (NM_023141, intron 4 of 5)	13876.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	2.80819909727995	2.69980373716743	2.79113022960718	3.02023357316122	3.02692069558388	3.21794846161519	1.5904918729371	0.0257075715192777	0.190066068195298
Merged-chr16-33912960-2	chr16	33912460	33913460	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54078.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.71662275361763	4.79927195827339	4.73791447585907	4.72905057284638	4.61795590697127	4.98314709545843	0.0473252768951943	0.907030078505241	0.978868492078838
Merged-chr1-52799614-4	chr1	52799195	52800195	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17993.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	5.52204014918217	5.78796822906359	5.56100470277506	6.45801748624107	6.17813969206727	6.19618463006095	1.13021591056648	0.000281081121840974	0.00659937866426179
Merged-chr2-73484808-4	chr2	73484319	73485319	+	888.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	934.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.61321648475065	6.94765519445672	6.85038985747896	6.873329976511	6.99151902760657	6.67432110133503	0.0782874563638527	0.769623381733442	0.943162130655928
Merged-chr7-80457465-4	chr7	80456951	80457951	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042527, intron 21 of 21)	MIR3|SINE|MIR	-52015.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.16268074605049	4.22654889198655	4.22334625020852	4.23530378789699	4.06806156689893	4.46004003513026	0.134187137660094	0.776359896250369	0.94480820353868
Merged-chr5-63830875-4	chr5	63830391	63831391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18396.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	6.78358432684318	7.0563117474699	6.94414471739231	6.87224392297892	7.26147060641716	7.0821970017134	0.233797703738097	0.372298264154122	0.75613031608614
Merged-chr2-153112221-2	chr2	153111721	153112721	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1M5|LINE|L1	3753.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	5.87669622021796	5.47741417476082	6.20858265433967	6.49400699233943	6.37732902292838	6.52186370965186	0.994563083560826	0.00243871496947411	0.0359979767926206
Merged-chr16-57336903-4	chr16	57336410	57337410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-16367.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.57066852945243	7.42499747486688	6.9211530003139	7.50202229855431	7.80626128395587	7.26831374537851	0.304815287481888	0.296026704248314	0.692779918635739
Merged-chr19-5687872-2	chr19	5687372	5688372	+	718.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144868, intron 1 of 34)	intron (NM_144868, intron 1 of 34)	1036.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	4.1306995444272	3.74176495280737	4.60237236037296	4.17976404725697	3.74307159276194	4.44792369676663	-0.134182025295404	0.820818676152073	0.957865453140284
Merged-chr11-21550476-2	chr11	21549975	21550975	+	715.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21459.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	5.00536047468678	4.91528830073625	4.61294052928177	4.85765938483948	4.95241515524879	5.06473281230737	0.198508309679661	0.617506144149634	0.888810836054056
Merged-chr1-171123109-4	chr1	171122621	171123621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081275, exon 2 of 6)	5' UTR (NM_001081275, exon 2 of 6)	1460.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	7.57778177424279	7.29386095806587	6.99158767364624	6.98800480101617	6.93938782586993	6.53966748511798	-0.711803735327811	0.0139049712823184	0.126200354543973
Merged-chr7-78846520-3	chr7	78846039	78847039	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029585, intron 1 of 4)	intron (NM_029585, intron 1 of 4)	672.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	6.66842429215407	7.19705487807633	7.24969950142934	7.03963366692568	6.899204530688	6.61333146636612	-0.29425692638375	0.318920297365186	0.712969374077442
Merged-chr12-79015050-3	chr12	79014592	79015592	+	817.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7815.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	5.45544274028014	5.39657982724467	5.7510912228329	4.01375920078078	3.76142814991946	4.13143267453954	-4.28190051208019	2.44804934610123e-15	7.17243978839406e-13
Merged-chr7-80791970-1	chr7	80791470	80792470	+	547.0	f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	11361.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.90638307545681	3.9324470122418	3.95786190945069	4.12460830769936	3.96339082685563	4.46025882423604	0.744259515792448	0.142905998200478	0.50455063667587
Merged-chr11-100319832-4	chr11	100319353	100320353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011508)	promoter-TSS (NM_011508)	-96.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	8.29904419396372	7.91765211660803	7.93020797369569	7.97039861363212	8.01471489416538	7.84899881549633	-0.16444974593371	0.4818104634316	0.825208669475694
Merged-chr2-32710600-4	chr2	32710098	32711098	+	966.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	2186.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	4.62504719320966	4.74986089302791	5.12115581695116	4.5229678018274	4.37524640340064	4.8024678619536	-0.655366453593553	0.140896863362721	0.501507730105887
Merged-chr2-84999646-4	chr2	84999171	85000171	+	975.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145526, exon 11 of 12)	exon (NM_145526, exon 11 of 12)	11456.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	2.54840228947815	2.2884327333583	2.53254206338659	2.36497362308926	2.31267984439816	2.35133217879169	-0.762774804186641	0.362881528403817	1
Merged-chr18-39145375-4	chr18	39144866	39145866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	152221.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	3.22057453512018	3.00432461567364	3.28288354789035	2.88623066974797	2.86600595226715	2.96021006733741	-1.28992647541845	0.0623847511583206	0.324555772256911
Merged-chr11-106480725-4	chr11	106480224	106481224	+	906.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	7072.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	5.48409409193949	5.52243831601426	5.43692556331469	5.4242112184363	5.27324547103209	5.28186421513859	-0.304880008809401	0.360962934749436	0.746938274913623
Merged-chr6-5637487-1	chr6	5636987	5637987	+	726.0	f0_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-88152.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	2.33841124907952	2.4019663074969	2.63699065271426	2.18961515023235	2.32468203361347	2.40425989184082	-0.98928386863521	0.251140639455287	1
Merged-chr19-4230613-4	chr19	4230117	4231117	+	935.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-1276.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	6.27774615009809	6.33305211492321	6.49874183607177	6.05575321876295	6.23942742994886	6.32437409611379	-0.263099408152544	0.350985450834596	0.738927106247438
Merged-chr4-53117820-4	chr4	53117315	53118315	+	932.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	42080.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.75159982801451	5.74944281143477	5.96467425214617	5.86235716880537	5.93533123614656	6.15275934276674	0.290851399182773	0.34245210746836	0.731311405759821
Merged-chr11-95849968-4	chr11	95849449	95850449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	6704.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	7.18375996236918	6.779779451616	6.95679970564081	7.16605986902031	7.31526089395931	7.02877255037059	0.296817013417365	0.256467655203856	0.653552886970565
Merged-chr10-10355758-3	chr10	10355258	10356258	+	764.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 30 of 36)	intron (NM_001127353, intron 30 of 36)	116556.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.44220077797286	2.13382173191278	2.18757283527886	2.42312598019869	2.17109730965776	2.46361695588392	0.604643859865519	0.503186617587371	1
Merged-chr10-84087747-4	chr10	84087229	84088229	+	926.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152790, intron 1 of 4)	intron (NR_152790, intron 1 of 4)	12968.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	3.51042313824332	3.58092311883578	3.53264549186959	3.54508643950246	3.6279752094179	3.94927961255568	0.581925865833256	0.305916737224821	0.702020471196356
Merged-chr11-121652707-3	chr11	121652201	121653201	+	879.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	20450.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	2.78307126543935	2.7666275582228	2.58834000613687	2.71482207302776	2.76132009822884	2.97190952475058	0.50016045925557	0.504181859108342	0.83751412120853
Merged-chr11-17159205-4	chr11	17158702	17159702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-96.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	7.65080854413329	7.86810606148988	7.81535563897631	7.39048895625909	7.46440441634009	7.31481585977217	-0.560357859067757	0.0134742357085146	0.123544264995491
Merged-chr19-53328666-2	chr19	53328166	53329166	+	848.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	-747.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	2.89286678544531	2.63357293115024	2.57498614212988	2.79341102803118	2.64562359334383	2.96199881900623	0.468249228305066	0.545079198299272	0.858019423019685
Merged-chr3-79419114-2	chr3	79418614	79419614	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142953, intron 2 of 4)	intron (NM_001142953, intron 2 of 4)	73738.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	2.74976552900253	3.14483786625171	2.9132487216535	2.78229845911356	2.82546212915324	2.66716287589471	-0.925015315503917	0.221243558193478	0.615738783266074
Merged-chr8-83738907-2	chr8	83738380	83739380	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	B1_Mur2|SINE|Alu	2431.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.03097562696352	7.96290285770832	7.37885482047775	8.34796181316313	8.56642700184755	7.97791700397831	0.696780637474944	0.0145630028288885	0.129947651113937
Merged-chr7-99147107-4	chr7	99146601	99147601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5957.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.09692470651183	7.17184788461921	6.96015544407445	7.30453014389598	7.40836922435965	7.46967715867859	0.460897068729528	0.0509911074538324	0.287735690077604
Merged-chr2-148401065-3	chr2	148400583	148401583	+	778.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5706.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	2.30842228121905	2.38600110132614	2.30679795828205	2.49716031489119	2.34170440287365	2.81822646368609	1.38330651512562	0.107209647475457	1
Merged-chr13-64154129-4	chr13	64153614	64154614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-915.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	6.4279109634949	6.38888021670306	5.69595501612419	6.59388800828006	6.4730805104509	6.17973751138077	0.336769430397212	0.324072288604037	0.717287790132387
Merged-chr5-64240675-2	chr5	64240175	64241175	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	B4A|SINE|B4	10318.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.71686468337617	7.76579883705991	7.696800414735	7.35332744057206	7.66159757647619	7.51821773342053	-0.299540984334027	0.190534442967998	0.576949468718024
Merged-chr9-123842897-2	chr9	123842397	123843397	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 2 of 17)	B2_Mm1t|SINE|B2	8764.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	2.72260983224778	2.74257393767312	2.90834534122634	2.62191688452131	2.76634957248498	2.86354503735756	-0.19399867369954	0.79116362579691	0.949694766870106
Merged-chr6-86518592-2	chr6	86518092	86519092	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7597.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	2.90839017516158	2.76041055061879	3.41009864935138	2.99574418112511	3.19372308346501	3.10585039038691	0.210294817464358	0.776185719120649	0.94480820353868
Merged-chr11-6476139-4	chr11	6475645	6476645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-69.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	7.73154296871164	7.92861668292293	7.5748031513068	7.78565632037032	7.9475662424639	7.51935477299016	0.0175700690604545	0.943320465550953	0.987377570608805
Merged-chr1-120120210-2	chr1	120119710	120120710	+	550.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	709.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	4.88825063686989	5.23668686551624	5.11703220935726	4.65412366549883	4.94823119898386	5.08227146841406	-0.400035974652259	0.316065493858283	0.71019071166749
Merged-chr13-49348816-2	chr13	49348316	49349316	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039179, intron 1 of 6)	L1MC3|LINE|L1	7267.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	2.71647115949009	2.42559720472434	2.45568757727403	2.56803909946792	2.35523653707084	2.65902818047054	-0.0675693428414903	0.934693632829336	1
Merged-chr8-94227486-4	chr8	94226992	94227992	+	882.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172410, intron 2 of 22)	intron (NM_172410, intron 2 of 22)	12928.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	4.21760336573705	4.53193076582731	4.09059060576453	4.30516554093839	4.11556048142649	4.20955610867693	-0.253509720199827	0.599053758199967	0.880902871165758
Merged-chr1-84934489-1	chr1	84933989	84934989	+	601.0	f0_balb.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	594.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	2.36933973907191	2.43244085036526	2.55317565641832	2.42988436625033	2.23320440725552	2.50252531178905	-0.393430005097306	0.635870499356633	1
Merged-chr9-37256464-2	chr9	37255964	37256964	+	709.81665	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	-726.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	4.80695980535727	5.28945395306423	4.85257644743371	4.46412033030387	4.50730065536275	4.68502794778839	-1.05955539703531	0.0128363635590425	0.119875212011314
Merged-chr5-103474446-4	chr5	103473949	103474949	+	925.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	49257.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	4.38998027952951	4.59528423364045	4.35573631791722	4.63015591983023	4.40323930018287	4.18265993398198	-0.0814161709149428	0.859308452041623	0.967267211164924
Merged-chr16-35741174-2	chr16	35740687	35741687	+	642.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 2 of 8)	RMER19B|LTR|ERVK	28169.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	3.72317015713174	3.50951526731977	4.04718121075491	3.85471002253133	3.90740740364505	4.39935469306257	0.910586567548707	0.113004924477597	0.449190930871443
Merged-chr16-85148766-4	chr16	85148284	85149284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	24923.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.40265291512619	5.37104276675619	5.16592002321343	5.2573647365036	5.10476981956839	5.55827339654534	-0.0346246814219825	0.924387588651375	0.982960139621551
Merged-chr2-90592158-2	chr2	90591658	90592658	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-11511.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.64767321338546	3.29189638415189	3.5599634094951	3.34052991196335	3.57389727188766	3.6810638983013	0.107385650864225	0.858558538438612	0.966933063363181
Merged-chr3-101600426-4	chr3	101599921	101600921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4286.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	7.26469403422577	6.7461662845375	6.94571641818883	7.24025346019733	6.94371972347086	7.11030009336738	0.143528050148099	0.602020062996859	0.882187830872038
Merged-chr9-85748455-2	chr9	85747968	85748968	+	942.75	f0_balb.idr|f0_c57.idr	intron (NM_175371, intron 1 of 27)	intron (NM_175371, intron 1 of 27)	866.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	6.88579936539454	6.63982599510494	6.65560337850348	6.91534833085387	6.93249085654804	6.76330120217476	0.220364965957466	0.391071999415044	0.770112153342334
Merged-chr10-62503353-5	chr10	62502829	62503829	+	913.4381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	B2_Mm2|SINE|B2	4428.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	6.77092070299373	6.72516304664598	6.63958506125392	6.99750747201664	6.89488140848611	6.52036307198289	0.177588602466509	0.512071189987602	0.841669751538036
Merged-chr4-139490918-4	chr4	139490427	139491427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39621.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	4.7140692080191	4.74543258893162	5.16165801593002	5.001056596496	4.73283897222266	5.06733487629447	0.123911721400304	0.763675280952955	0.941793063578371
Merged-chr13-21011333-3	chr13	21010831	21011831	+	847.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012054, intron 19 of 20)	intron (NM_012054, intron 19 of 20)	61968.0	NM_146535	258528.0	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	3.45718380404332	3.58192366799041	3.76662310017829	3.52073472114408	3.47822323836601	3.73813198036769	-0.0869007656118553	0.879363152909799	0.972083703102674
Merged-chr5-100040453-1	chr5	100039953	100040953	+	1000.0	f0_balb.idr	intron (NM_001163035, intron 1 of 6)	intron (NM_001163035, intron 1 of 6)	459.0	NR_027990	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	7.36137341985996	7.48568464088346	7.33881371634005	7.26051630855074	7.10854538679895	7.18714465541521	-0.320671283976282	0.166446572343044	0.541722850329345
Merged-chr12-3792468-2	chr12	3791968	3792968	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14512.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.38106296287044	4.35319064100209	4.3898605208051	4.51981988193234	4.6496405475143	4.17244556680655	0.260359819147653	0.569156997319441	0.8688875602138
Merged-chr2-59055910-4	chr2	59055411	59056411	+	907.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 1 of 13)	L1MA9|LINE|L1	104772.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	3.62681069304305	3.87110550396234	3.71513128804567	4.03286687305526	3.83343607152396	3.67642481955925	0.368701983205332	0.497811590464576	0.833791434757709
Merged-chr12-100184283-4	chr12	100183794	100184794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-3674.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	6.97721198712009	7.16794402411362	6.5375885847981	6.91913384429393	6.99843616135941	6.54060598591878	-0.135358604772185	0.652744482619892	0.903005353518697
Merged-chr5-25498111-4	chr5	25497601	25498601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081383, intron 1 of 58)	CpG	682.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	7.24990089622322	7.73212109978978	7.67020064031219	7.33643950168407	7.33136121905465	7.43235077598582	-0.296084281707155	0.241410609850479	0.63840120846778
Merged-chr15-62096829-4	chr15	62096332	62097332	+	852.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	57575.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.93904827766234	3.75635563859161	3.65679795808759	3.57023644744706	3.58480942463031	3.77967358360226	-0.510738416043042	0.353030512559758	0.74042924884689
Merged-chr2-70969335-2	chr2	70968835	70969835	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	(CA)n|Simple_repeat|Simple_repeat	49039.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.91591282481426	6.11024083230609	5.74245648436212	5.9468323429912	6.19016779614893	5.83194215302599	0.118878954725151	0.707356983477484	0.923345881670345
Merged-chr17-17868576-2	chr17	17868083	17869083	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-13395.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	4.99866047749482	5.00793856056184	4.76794274602618	4.72056284870728	4.87722646745963	5.30534964981338	0.0964614181683895	0.815086374734936	0.956370078970016
Merged-chr3-27690289-4	chr3	27689798	27690798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	20154.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	8.25575320212739	8.29199239257795	7.71178431069398	7.97200112671205	8.35255646150576	7.8920998700952	-0.0357477048616828	0.894965448405791	0.97562294541392
Merged-chr8-123101855-2	chr8	123101309	123102309	+	615.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	-541.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	4.78234656484478	5.12000707786954	4.95562379686113	5.53423607215242	5.44874581476299	5.36179886934917	0.996003315780397	0.00633438216598048	0.0727195462564713
Merged-chr1-171157239-1	chr1	171156739	171157739	+	554.0	f0_balb.idr	intron (NM_001315499, intron 1 of 5)	intron (NM_001315499, intron 1 of 5)	1721.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	2.77046679779256	3.1448011241626	3.02396533629412	2.83445482674772	2.78506720708238	3.31412691812085	0.0295611294415333	0.968608808700117	0.992811398801848
Merged-chr11-82561725-4	chr11	82561219	82562219	+	936.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-71634.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	5.09578147950226	5.32859555094164	5.76891277068174	5.36820641532312	5.51115976605995	5.63490012428696	0.175460053543932	0.639575176797123	0.898199312621371
Merged-chr9-116102809-1	chr9	116102309	116103309	+	713.0	f1_balb.idr	intron (NM_029575, intron 5 of 6)	L1MC4a|LINE|L1	72554.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.76766217172421	6.2562680791065	5.6061718678456	5.5625148303793	5.91856574914004	6.38138972976691	0.132158381045681	0.732554539675809	0.931782229960786
Merged-chr17-27800898-3	chr17	27800390	27801390	+	856.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	19652.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	3.04939882172317	3.11447519995406	3.18889844301634	3.0347156966485	2.91459672896272	3.36705375763961	-0.0234596687190556	0.972372734996009	0.993868590220018
Merged-chr12-76548394-3	chr12	76547929	76548929	+	878.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046044)	promoter-TSS (NR_046044)	-504.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.70291512384706	3.44139234571773	3.46096132037435	3.5162878625145	3.41577603659409	3.63994627043375	-0.0828224937414938	0.886831045632704	0.973794308941933
Merged-chr16-65423010-1	chr16	65422510	65423510	+	713.0	f0_balb.idr	Intergenic	Intergenic	-97619.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	2.86274635520228	3.03734048179424	2.77627340015594	2.82962570816625	2.79345731727732	3.14664001274834	0.12625899944887	0.862241054016197	0.967996224966109
Merged-chr6-43640757-4	chr6	43640201	43641201	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	25577.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	4.5025283478018	4.48370292234816	4.20023244128859	4.45288789411921	4.5908143630754	4.66454934747233	0.391528086608209	0.375578964898936	0.758851065703868
Merged-chr1-106759034-3	chr1	106758528	106759528	+	993.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027534, intron 1 of 9)	intron (NM_027534, intron 1 of 9)	714.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	6.42651995539462	6.92651023021363	6.88784174052479	6.33353495060875	6.57841226369708	6.45616508097365	-0.47762529404539	0.10183159788377	0.425738109693493
Merged-chr13-4663042-4	chr13	4662560	4663560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53896.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	6.36163487978829	6.459229671393	6.30248471859852	5.85548293267359	5.92014270982123	6.28507457974056	-0.602938616287035	0.0419630237565914	0.256400299657692
Merged-chr6-71981582-4	chr6	71981060	71982060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60968.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	4.60882095758661	4.42757682707066	4.47554803543787	4.66112592213028	4.3689592720862	4.31769049547701	-0.118170856969863	0.789404360780469	0.94921167421876
Merged-chr12-85364700-5	chr12	85364210	85365210	+	846.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	MTD|LTR|ERVL-MaLR	10007.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.52538264215866	4.5954022996274	4.77843173336826	4.51804175567951	4.55475362790644	4.57434894528465	-0.196466192234608	0.637626528703531	0.89735407749672
Merged-chr9-44522132-4	chr9	44521650	44522650	+	976.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	4271.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	3.53570410458271	3.44831754609412	3.40984881792003	3.99624494034225	3.71812342338699	3.60071077025953	1.09815232229996	0.056440914874945	0.306249471464912
Merged-chr6-122935047-4	chr6	122934556	122935556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199311)	TTS (NM_199311)	13208.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	6.50001908104878	6.52139613072714	6.61501034014402	6.95220420129199	7.00007710101881	6.58783379571721	0.514459132181123	0.0550836461863378	0.301539475781105
Merged-chr6-53390604-4	chr6	53390116	53391116	+	957.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 4 of 10)	L4_B_Mam|LINE|RTE-X	103313.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	5.79920878258114	5.96556235557015	6.27891018059431	6.01699994000141	6.08467312009604	5.96245563403249	0.0144051091894762	0.962907828928159	0.991016963580472
Merged-chr8-125724519-2	chr8	125724019	125725019	+	710.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9684.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	4.67223697161611	4.73156127210471	4.87893973822432	4.45513983137129	4.64016409703061	5.13586061148341	0.0126494004220201	0.977157707164396	0.994771164142869
Merged-chr3-8974012-4	chr3	8973523	8974523	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9877.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.73644206695813	4.47744471982324	5.1737890437115	5.7558772866283	5.86584331991412	5.59707873483811	1.9084611787534	1.30591486463347e-06	6.86001035709731e-05
Merged-chr16-94603284-2	chr16	94602784	94603784	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8135.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.43980324338507	5.72432637810099	5.18975165568044	4.98238878384272	5.01556953915552	5.04129248922644	-0.950247536896509	0.0106024602632439	0.104694083873651
Merged-chr9-50564842-2	chr9	50564342	50565342	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-3574.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	4.6136820045359	4.5026053281373	4.92493093030151	4.75333177635228	4.54536172213964	4.95531256612595	0.163151194479155	0.705080325793092	0.92270290989203
Merged-chr2-166662978-4	chr2	166662496	166663496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	50836.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.43215499570632	4.32592888493081	4.35772033411313	4.69877791097931	4.66410012460686	4.51484347459559	0.646893307600741	0.128457573435777	0.479399792359353
Merged-chr2-52998110-4	chr2	52997621	52998621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.01766623610862	6.86438095745317	6.81762402399294	6.7637483936616	6.85618615116365	6.80021930641659	-0.150820718471416	0.543726856705732	0.857551302506722
Merged-chr18-11835148-4	chr18	11834640	11835640	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-4134.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	4.88223692029651	4.81394293309589	4.91791166283507	4.94046502962096	4.91658531054859	4.79488171081224	0.0472085673080258	0.90152731394726	0.977266678605068
Merged-chr1-178321412-2	chr1	178320912	178321912	+	642.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_149827, exon 17 of 17)	non-coding (NR_149827, exon 17 of 17)	2259.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	4.03513284525931	4.03066894721565	4.14381417342143	4.00019914425332	4.22994600749026	4.65105214570673	0.673577986916098	0.182112391430206	0.564722535822149
Merged-chr6-85915997-6	chr6	85915463	85916463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023160)	promoter-TSS (NM_023160)	-8.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	7.2964092344673	7.41969518561197	7.28146722949832	7.18167709816061	7.34383803460553	6.98028255154228	-0.221638593012143	0.366113489689467	0.751185363961166
Merged-chr18-34262983-4	chr18	34262471	34263471	+	929.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	15277.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.40862207417812	3.4076555701418	3.5075665561577	3.58157506240993	3.73331957028524	3.46717005000861	0.608761840898263	0.290398498069616	0.68820250711676
Merged-chr11-40694951-4	chr11	40694398	40695398	+	951.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001199274, exon 1 of 7)	5' UTR (NM_001199274, exon 1 of 7)	305.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	6.96969243350936	7.55150289765861	7.24179321033278	7.23850123941303	7.62894109919587	7.36743019396197	0.216322029502844	0.436737194720261	0.799612421956124
Merged-chr8-120745015-3	chr8	120744506	120745506	+	891.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6367.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.98608313857454	6.79567130221029	7.03871648105325	6.93975352840657	6.84369073970522	6.60192098860566	-0.20063691213035	0.441902256687759	0.803014502214766
Merged-chr11-3267268-2	chr11	3266768	3267768	+	663.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	-805.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	4.37622421548362	4.56715976094589	4.42734720037564	4.64050043788959	4.2941356246938	4.11239512252687	-0.224939007346681	0.632117913150989	0.895435008062156
Merged-chr1-105665211-4	chr1	105664693	105665693	+	911.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 1 of 28)	intron (NM_173187, intron 1 of 28)	1332.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	5.26748170701796	5.08699498063249	5.44260808087035	5.31790363978593	5.37151168228084	5.35896219742712	0.173629989001934	0.620011840466992	0.890023686663772
Merged-chr11-98027045-4	chr11	98026565	98027565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009078, intron 1 of 5)	CpG	141.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	8.61571501518795	9.08000603598775	8.66358477411092	8.51515867324817	8.73136821395432	8.57791875640295	-0.268314748222602	0.250030646145071	0.647249790139038
Merged-chr7-80375604-4	chr7	80375127	80376127	+	881.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4252.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	3.51077072148943	3.42446292562243	3.80492257775575	3.55419767237065	3.5171073286941	3.68043461736337	0.00207526121035288	0.997128041672306	0.999338276935267
Merged-chr7-110389058-4	chr7	110388555	110389555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	167352.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	4.59111157961081	4.71658659436651	4.74996266392294	4.81652876396339	4.93697644087922	4.89040078368804	0.456936428668243	0.243844661912931	0.640958811221234
Merged-chr11-44478645-4	chr11	44478170	44479170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-8122.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	4.89938712646604	4.93875811088125	5.3533349408587	5.39409017764835	5.18597426816138	5.38709478925438	0.523404264459392	0.164937167801229	0.539617077326343
Merged-chr5-43855976-4	chr5	43855463	43856463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12846.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.62714367335743	6.02724423887356	6.55275692748392	6.35662992116412	6.14604240300018	6.32649071538521	-0.246986777682034	0.430912137665719	0.796614699034595
Merged-chr10-81601814-2	chr10	81601314	81602314	+	754.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-914.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	2.94096963676761	2.79143570342727	3.11319286592332	3.13256109747257	2.711325449264	3.39794422199789	0.687445205909211	0.362601172972378	0.748111043904925
Merged-chr15-84233050-2	chr15	84232550	84233550	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	1007.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	6.2890245118917	6.65433920512768	6.45860590025916	6.70041584282455	6.69943815884289	6.34392131600404	0.196020597080179	0.494735944196347	0.832098209532918
Merged-chr2-131502719-4	chr2	131502229	131503229	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	10867.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.3270492093465	4.30487175058389	4.22132802952046	4.08633070306405	3.80395026817469	3.84049961640636	-1.08370497011953	0.0287149662416753	0.203135245729856
Merged-chr8-72421588-4	chr8	72421103	72422103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289859)	promoter-TSS (NM_001289859)	-129.0	NM_001289859	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	7.18456656502816	7.26392364271901	7.19875735849486	7.11897918438371	7.20320387054982	7.09446716552001	-0.111143110256694	0.632181893809247	0.895435008062156
Merged-chr2-117342279-4	chr2	117341756	117342756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	621.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	8.0755701893085	8.0923616937133	7.35653271311878	8.25696050774892	8.50690789326024	7.80193290347531	0.471322763941358	0.125238318763867	0.47354314333656
Merged-chr11-116026834-2	chr11	116026334	116027334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2330.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	7.25907455215374	7.11301018292998	6.402864900674	7.4418098328227	7.73061151941282	7.18851792889448	0.728452013394284	0.0249666844268348	0.186874424221059
Merged-chr2-167716046-4	chr2	167715527	167716527	+	884.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24850.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.71635909661395	5.57411615736818	5.69440673858814	5.43190650653341	5.43766942142407	5.38810413644193	-0.453331332769895	0.160422393672338	0.533005464258189
Merged-chr14-19977151-4	chr14	19976678	19977678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	71.0	NM_001038637	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.01753377186704	5.74945348740371	6.21307330110488	5.64235299114904	5.58911222826513	5.77107987089661	-0.59864731987563	0.0638005872014985	0.329100443857311
Merged-chr16-95658992-4	chr16	95658494	95659494	+	752.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43413.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.40075405163827	3.5703302471012	3.35017954135974	3.41091386773638	3.22291583788294	3.36480005259388	-0.453290565687505	0.453626691209873	0.809882198047271
Merged-chr7-96977420-4	chr7	96976934	96977934	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	25907.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	6.01008164194275	6.21359629530541	5.7648153543429	5.9575168438468	6.10775271707152	5.62667069470227	-0.161498986363491	0.626101869735088	0.892819497179456
Merged-chr7-123211086-3	chr7	123210587	123211587	+	872.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3779.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	3.18076808864636	3.29002723631819	3.5486690395159	3.04483613393356	3.21562613290705	3.19205327480621	-0.773826492800753	0.233477671761449	0.629826270159681
Merged-chr17-25184518-4	chr17	25184025	25185025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183150)	promoter-TSS (NM_183150)	-36.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	7.68401759377013	7.79734690375636	7.85340013190075	7.82705773447675	8.10942529045115	7.83653773514355	0.227832117417242	0.314400511820325	0.708710692372488
Merged-chr14-31436141-4	chr14	31435633	31436633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-33.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.46971704479636	7.45967857289755	7.49792888291105	7.59725589228369	7.5400183066394	7.53496320717377	0.121618779924573	0.578424514595971	0.872437129840066
Merged-chr3-96572127-4	chr3	96571626	96572626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5325.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	6.87477595223359	6.45553195044389	6.91730090985468	6.66811598210879	6.77977837126457	7.00170436304209	0.0916810123758849	0.745819777127778	0.936251303305737
Merged-chr3-84582200-3	chr3	84581732	84582732	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	393.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	5.67146125441539	5.95025942724764	5.9314367030604	5.60297562271529	5.76249588561062	5.52514987470793	-0.385423351905083	0.231597795541465	0.627549478032246
Merged-chr19-24279842-1	chr19	24279342	24280342	+	703.0	f1_c57bl6.idr	intron (NM_008044, intron 1 of 4)	MIRb|SINE|MIR	744.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	3.83981568080007	3.5343700773804	3.67190293537643	3.65081430083604	3.95651084339842	3.33001376861393	-0.0274117951361949	0.965050482719923	0.991748846039908
Merged-chr8-120742721-4	chr8	120742210	120743210	+	978.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	4071.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.63589345333674	6.62428186846821	6.79777723073583	6.64013380921339	7.03434082034317	6.17074457055233	-0.00777425900138492	0.980693743913333	0.995560772285461
Merged-chr1-131990621-4	chr1	131990128	131991128	+	893.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16977.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	3.90591499098292	3.46594832307778	3.82246932516486	3.53121269091606	3.55342167892948	3.34795849263359	-0.898811757441471	0.135177172915325	0.491294119824757
Merged-chr10-7955908-3	chr10	7955399	7956399	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_138667, exon 1 of 7)	5' UTR (NM_138667, exon 1 of 7)	224.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	8.14743831095343	7.67547107420171	7.87938332579451	8.29210136336846	7.41339441860619	7.89617884732972	0.00262422179459603	0.99304954412514	0.998646946749805
Merged-chr7-35151039-4	chr7	35150562	35151562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31769.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.541654945678	4.13841934881278	4.54097965366913	4.2731298694155	4.24577095659251	4.9544387071011	0.26632964838184	0.601196992425486	0.881884913086671
Merged-chr13-81785828-3	chr13	81785379	81786379	+	945.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	2632.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	4.57101218496665	4.58054081289849	4.51403533242609	4.59560057918588	4.64639166086551	4.30822925032932	-0.0518152087745877	0.904489483605448	0.978131323042371
Merged-chr2-114233298-4	chr2	114232797	114233797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31865.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	4.30568796687968	4.37137142505236	4.21741122392841	4.02301968468583	4.13186331047797	3.88401038698901	-0.777720031093032	0.108816829743894	0.440755119220504
Merged-chr10-10556780-2	chr10	10556280	10557280	+	952.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	1427.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	7.60677954030061	7.7209462198692	7.50952520577505	7.82522329268105	7.97355164357772	7.75541976623973	0.344899020262788	0.12421338248222	0.471601469447498
Merged-chr1-86443732-2	chr1	86443232	86444232	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	17403.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.16397717316511	3.81167775981908	4.14832739072313	4.09081347759118	3.94375625942739	4.17105504377587	0.0537895663731596	0.915180582053472	0.980959026698783
Merged-chr1-171437517-4	chr1	171437059	171438059	+	868.408325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151523)	promoter-TSS (NR_151523)	-2.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	3.82715351939345	3.70584887388089	4.07882924204153	4.19078036656454	3.99585500722086	4.31956210967966	0.886483746865396	0.0849391848496592	0.385892421128607
Merged-chr5-19897264-4	chr5	19896759	19897759	+	891.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-10259.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	3.31168746170727	3.47705589648858	3.25567202016331	3.37808885905736	3.082454360693	3.54725371979098	-0.046809095253987	0.941967023973224	0.987092317509512
Merged-chr15-38662530-3	chr15	38661975	38662975	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	571.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	8.10222619286492	8.55243840837351	7.83290059478961	8.12886478312228	8.30246806464497	7.50490492045737	-0.243748655219159	0.431140576282575	0.796688090876857
Merged-chr8-83994399-3	chr8	83993882	83994882	+	850.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008854, intron 8 of 9)	B1_Mur4|SINE|Alu	-3290.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	3.34250905906768	3.31491159707769	3.49227368936003	3.55295323916772	3.24693326521808	3.6141640918793	0.350764480561576	0.563300914745213	0.865926383742263
Merged-chr1-153493457-4	chr1	153492898	153493898	+	621.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-5738.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	5.63099413196248	5.82969499546636	5.90128158291693	5.88584678384785	5.80992084347441	5.84235475400247	0.105223051144305	0.731738388193586	0.931535693390145
Merged-chr14-26637271-2	chr14	26636771	26637771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-863.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	8.41851789031966	8.67074262872634	8.14638798060321	8.59802823992461	8.79739513136342	8.26365908110632	0.197032302231365	0.443207034919635	0.803677968958376
Merged-chr9-16046873-4	chr9	16046411	16047411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-172355.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	4.83880600538473	4.80724423900597	4.40163714267631	3.91467124968008	4.2522730526635	3.96438948572259	-1.67506484394327	0.000941065142792479	0.0171681974131718
Merged-chr12-32238699-1	chr12	32238199	32239199	+	623.0	f1_c57bl6.idr	Intergenic	Intergenic	-30050.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	3.292830662271	2.92604486744967	3.35549162992377	2.8435688033672	2.81179273676046	3.09972277276604	-1.30319154019773	0.0709410522926997	0.349403115930339
Merged-chr2-73214443-4	chr2	73213934	73214934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025942)	promoter-TSS (NM_025942)	13.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	5.62685541499184	5.77459581647869	5.3888275707273	5.69129769241977	5.90666702816825	5.60641909903222	0.243097309564463	0.46680451676159	0.817652165708111
Merged-chr8-71755192-3	chr8	71754709	71755709	+	830.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29528.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	2.63586465457578	2.68064420442214	2.90117919208223	3.08148234972865	3.03153089184386	3.09220592395322	1.68965492887093	0.0205459842665271	0.164288896679722
Merged-chr11-106777152-1	chr11	106776652	106777652	+	595.0	f0_balb.idr	non-coding (NR_027785, exon 3 of 8)	non-coding (NR_027785, exon 3 of 8)	2314.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	3.15424569983643	3.01342761242441	3.17003412767912	2.97112813963791	2.92665812169255	3.29552711170822	-0.201927547823798	0.765122871172259	0.942123616786297
Merged-chr2-130731420-4	chr2	130730936	130731936	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	L2a|LINE|L2	-33917.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	6.84515864357175	6.59568518172344	6.71595651810624	6.13018949856254	6.28376529655976	6.74455836035717	-0.514034098129045	0.086633687514735	0.389886736477152
Merged-chr2-29771100-2	chr2	29770600	29771600	+	560.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	9572.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	2.32429483148664	2.46631202171775	2.52498019317522	2.24797963593991	2.15590312792782	2.21052858245796	-1.67065596785145	0.0605368024473721	1
Merged-chr4-147519127-2	chr4	147518627	147519627	+	781.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-34150.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.37373850539549	3.87665203669187	3.83606573194188	3.36141492209408	3.34282234777181	3.90426011125461	-0.531501890436704	0.408017075482491	0.781926100186554
Merged-chr3-88605523-2	chr3	88605023	88606023	+	700.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-10684.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.76776451517676	4.50306818129824	4.98991318881573	4.93501365399415	4.87802077885095	4.8794140418352	0.318681873893592	0.434821529195948	0.798660466628143
Merged-chr5-105052302-4	chr5	105051804	105052804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 1 of 9)	intron (NM_029509, intron 1 of 9)	1257.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	7.29957050523939	7.28053824987923	6.90465017465458	7.27404295458936	7.52073095976493	6.94809641579119	0.146072808987651	0.601399137524145	0.881938496212464
Merged-chr4-12461380-1	chr4	12460880	12461880	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-289365.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.10494209581162	5.54474671541437	5.36777574639733	5.27404322644271	5.03630961998123	4.996277220729	-0.494140760924295	0.188500627611724	0.574100439060177
Merged-chr18-39801315-4	chr18	39800807	39801807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27810.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.97347677507651	7.94047450926241	7.92601894947597	8.12488988673442	8.35102110858566	8.02779339375455	0.33111598678168	0.130810820899823	0.483390628655348
Merged-chr15-77306045-3	chr15	77305550	77306550	+	596.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	1003.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	3.72751801526279	4.06886399905462	3.94065954029756	3.83504371611634	3.27097031488859	4.10023575877206	-0.430895236373493	0.49743400405649	0.833640755144374
Merged-chr10-30710380-4	chr10	30709883	30710883	+	660.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-54516.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	3.0557302237312	3.00835102993934	3.13529162554039	3.16673451435974	3.44416225445208	2.89284698920285	0.559635514988601	0.426590498148664	0.793840707522572
Merged-chr13-43532227-1	chr13	43531727	43532727	+	554.0	f1_c57bl6.idr	Intergenic	Intergenic	27964.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	4.10373384758585	3.93961683569345	4.1808422685509	3.66673756366941	3.35193835158766	3.55698438298605	-1.86435514721814	0.0010751374335559	0.0190583799683253
Merged-chr10-80932869-4	chr10	80932392	80933392	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008655)	TTS (NM_008655)	2801.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	5.6502173367875	5.39328130101889	5.62659052965288	6.1114951134203	5.93365687439182	5.94351198660778	0.796396871794964	0.0111380074264475	0.108483123251766
Merged-chr14-31206762-4	chr14	31206249	31207249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022656)	promoter-TSS (NM_022656)	77.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	7.16540903288285	7.28675034730994	7.27231580376987	7.41010716995597	7.11364360765456	7.09804294020145	-0.0369771494574641	0.879736574346928	0.972203905732983
Merged-chr13-45269071-3	chr13	45268557	45269557	+	924.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120685.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.81212515804886	3.84137801577628	3.97160917319082	3.54627411413109	3.34002509530563	3.59321878629237	-1.34716162728713	0.0172665977248975	0.146445062045446
Merged-chr8-40513717-2	chr8	40513213	40514213	+	820.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033560, intron 1 of 11)	intron (NM_033560, intron 1 of 11)	1930.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	2.40009266360707	2.40312935511172	2.62947905508722	2.45244068963407	2.39265466433035	2.76137856704312	0.366074156146498	0.65414633603945	1
Merged-chr1-143777181-4	chr1	143776678	143777678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	-100.0	NM_001159866	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	8.05912232185413	8.45771399380216	7.8457224130459	7.99545649695303	8.1025239728569	7.57306298691698	-0.33334149406277	0.226626463388525	0.62156609505752
Merged-chr5-63831240-4	chr5	63830736	63831736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18741.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	6.57693759931841	7.00394951212274	6.89281630924479	6.87754868195715	7.25390968450844	7.01985336923658	0.35008835321335	0.204033202987604	0.594262340917239
Merged-chr11-75655089-5	chr11	75654657	75655657	+	994.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-858.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	8.57262599495976	8.66156930838719	8.24535530353885	8.65179948434051	8.94643024378746	8.42008454570215	0.25812980133358	0.297046690632904	0.693644655668365
Merged-chr2-158767910-4	chr2	158767395	158768395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027975)	promoter-TSS (NM_027975)	-204.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	3.55554026814204	3.38999593669011	3.31435826633505	3.52672377962873	3.55679611898095	3.61090747902761	0.493364299921534	0.397142757281879	0.774061384083543
Merged-chr4-132961612-2	chr4	132961112	132962112	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12483.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.95882856177965	5.86955090679159	5.99293017905629	5.67878909299106	5.9500369447449	5.76305601368278	-0.226369949025903	0.460147735060321	0.814270337828624
Merged-chr7-126135614-4	chr7	126135113	126136113	+	737.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-53202.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	6.31437051852366	6.49674238736128	6.18661631881006	6.45330574986014	6.17873966243216	6.15986708579029	-0.122757646850574	0.671973554512061	0.910719060610024
Merged-chr10-44447580-2	chr10	44447080	44448080	+	857.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	11168.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.05513444030534	3.97505187374213	3.9339037941969	3.95614883855775	3.69124044611235	4.09769969504846	-0.231332866118061	0.655664471505732	0.904316818529214
Merged-chr2-167377911-4	chr2	167377398	167378398	+	964.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28720.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.32608869501425	7.10699231339188	7.05134211935378	7.03611576063564	7.10277470978467	6.82076636364277	-0.258803548395957	0.305614724582558	0.701727269982308
Merged-chr6-145234202-2	chr6	145233702	145234702	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 3 of 4)	intron (NM_021284, intron 3 of 4)	16029.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	3.00775945156092	2.9293961486781	3.05107897459535	2.81762198136524	3.15224284011771	3.12271792945044	0.211020915202962	0.759769537102094	0.940572672765463
Merged-chr9-7572827-4	chr9	7572333	7573333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310717, intron 2 of 9)	B3|SINE|B2	1437.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	7.49430599200469	7.38928588779725	7.22269607474879	7.69677638429138	7.77628992782752	7.29139649598452	0.347039256288226	0.173600638010671	0.552705639471662
Merged-chr8-69022359-1	chr8	69021859	69022859	+	561.0	f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-66377.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	3.69274783353624	3.29602322254323	3.61889221465921	4.33770072310453	4.38549582111178	4.11768731045827	2.40161869495162	3.18293676377668e-05	0.00108365712864292
Merged-chr14-61681406-4	chr14	61680853	61681853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1020.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.76090391211836	8.81492664277071	8.40452703219575	8.52340074946818	8.87728609033555	8.5608562301839	-0.0131194403765344	0.955610168919486	0.989763164889919
Merged-chr16-13903685-1	chr16	13903185	13904185	+	1000.0	f0_c57.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	524.0	NM_001289562	93734.0	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	6.29342177218945	6.760480174071	7.02524166786347	6.86059817599276	6.89728149966738	6.74993067448249	0.186989814346942	0.53260939866318	0.851971173271146
Merged-chr11-98201642-2	chr11	98201142	98202142	+	937.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1663.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	4.99308694875758	5.17133957946088	5.40984709369402	5.24086641333138	5.33787269911486	5.02129318597027	0.0494645708648292	0.894910961280978	0.97562294541392
Merged-chr13-24776407-4	chr13	24775894	24776894	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-14457.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	4.09980131680741	3.99845749664472	4.05576701224938	4.0140774997202	3.78201386313929	3.98019225698528	-0.387685629353511	0.437401402194821	0.799946781486006
Merged-chr2-167773122-4	chr2	167772616	167773616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81939.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.08664161549996	7.94572732446414	7.83197523576629	7.7889944253386	7.97749291160739	7.52427074073599	-0.251319869301111	0.296936975711364	0.693511179566253
Merged-chr15-62049278-2	chr15	62048778	62049778	+	636.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	L1ME1|LINE|L1	10021.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.10356817744859	2.99121385217611	3.2629386025762	3.40600330998171	3.34748713239998	3.54849338918155	1.30702718220478	0.039993678136457	0.248900072578782
Merged-chr10-80170695-2	chr10	80170195	80171195	+	855.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_007705, exon 6 of 7)	exon (NM_007705, exon 6 of 7)	-2249.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	4.62262531810057	4.26912008562024	4.70899768263358	4.73259468758899	4.38071478523607	4.84606544458992	0.284205686798842	0.534000849244437	0.852822080248808
Merged-chr8-35520121-3	chr8	35519627	35520627	+	981.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24594.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	2.8155711649996	3.00511245778207	3.01918394485943	3.3965674423602	3.38449457463751	3.64418108210161	2.34513014806786	0.00079173089057802	0.0150647939499693
Merged-chr4-119126905-2	chr4	119126363	119127363	+	993.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18118.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.36744821373047	5.43385749536269	5.46418047835001	5.88942676034145	5.87761498723288	6.11492323137056	0.986872139318052	0.00180738138763661	0.0285746894361519
Merged-chr11-46834383-4	chr11	46833870	46834870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	23571.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.96000045843077	6.00041197083481	6.42708014083712	6.28792320721196	6.24229013618509	6.26485416237655	0.221737845792237	0.460408650362378	0.814493100443345
Merged-chr1-194978219-3	chr1	194977730	194978730	+	878.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1271.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.04455396695207	3.97851630968865	3.90371289121095	3.52504030732943	3.42726391181231	3.77308761536448	-1.37852683030862	0.0128991282138978	0.120312819237978
Merged-chr4-149775888-2	chr4	149775388	149776388	+	822.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.64650927150244	3.43086888703968	3.61081744616425	3.46645309519742	3.3585929523968	3.57647819527259	-0.368246836584735	0.525295333307958	0.848961330365904
Merged-chr2-18923289-1	chr2	18922789	18923789	+	951.0	f0_balb.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	74832.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.0364632511664	3.29142722548667	3.05609109399343	3.1070535182992	2.93312154071203	3.12884595915157	-0.366111619059365	0.584897499236428	0.874754719025748
Merged-chr3-136323902-3	chr3	136323447	136324447	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	2119.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	5.71698733974298	6.14553493963094	5.68996628367923	5.98589048416832	5.82264954175162	5.72512818042855	-0.0476452473111292	0.885354313619764	0.973589037858952
Merged-chr1-138175341-4	chr1	138174835	138175835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011210)	promoter-TSS (NM_011210)	-30.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	8.06369414684305	8.47952376093961	7.75529855293401	8.09641252406851	8.46060297850819	7.91597537395026	0.0594975826134311	0.834839953050444	0.96138272464184
Merged-chr2-33755281-2	chr2	33754781	33755781	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-50535.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	3.83786431253249	3.75739191940166	3.57452945844	3.55811778630779	3.18828775453752	3.29356537077123	-1.39789617818182	0.0234351569703527	0.179392138103874
Merged-chr5-107749635-3	chr5	107749069	107750069	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-23764.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	3.1580622875028	3.20233107648929	3.17430142162157	3.06793916865693	2.96279608176079	3.00893823623136	-0.748950265049834	0.252006394913799	0.64958999373089
Merged-chr14-121985681-4	chr14	121985133	121986133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-20440.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	5.68427268003457	6.048542157024	5.7064703992603	5.78807297425608	5.70957598828967	5.68732813576416	-0.184801399832312	0.565133465723069	0.866552670637515
Merged-chr8-72151890-3	chr8	72151387	72152387	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001491, exon 8 of 8)	3' UTR (NM_001001491, exon 8 of 8)	-9313.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	3.97446994225548	4.13400677321057	4.23098598368162	3.67321306092593	3.57445556588351	3.9881225448621	-1.15509244169161	0.0315516062911163	0.215142077237881
Merged-chr9-101034007-2	chr9	101033481	101034481	+	914.033325	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311149, intron 1 of 13)	intron (NM_001311149, intron 1 of 13)	903.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	6.52236109423376	6.84012189837461	6.58042200081207	6.58839271721919	6.65544032426503	6.72136421053842	-0.0101299993979253	0.969680940188697	0.993198925979166
Merged-chr11-34056681-4	chr11	34056163	34057163	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	9735.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.59739051203608	5.50616984873368	5.78692791286301	6.08501061983258	5.96939169577387	6.03579797830583	0.723401776103968	0.018121299915302	0.151596561377232
Merged-chr5-99297787-4	chr5	99297295	99298295	+	932.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-44868.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.49461134161441	6.45436649749801	6.27416662776831	6.66420396248762	6.60481615242421	6.22744740892295	0.17111512795443	0.549131867165677	0.860215389264136
Merged-chr13-23532644-2	chr13	23532144	23533144	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1267.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	5.01218502607068	5.2080644745516	5.22706526903113	5.27290143097622	5.60315805049827	5.47169348128205	0.628998014032669	0.0765295401366097	0.364316766331941
Merged-chr12-110854161-2	chr12	110853661	110854661	+	665.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	3882.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	3.33634232824098	2.86338077016584	3.08405015777877	2.89553175268583	2.92755516858479	3.21314397346633	-0.424715724450528	0.552143362028712	0.861546661145201
Merged-chr12-98258531-2	chr12	98258031	98259031	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008079, intron 1 of 16)	intron (NM_008079, intron 1 of 16)	928.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	6.95530138869127	6.93559709283696	6.84563859530415	7.0878181875182	6.70767748481251	6.79809790195528	-0.0643581875341254	0.804751015651657	0.953651704501661
Merged-chr9-117902491-3	chr9	117901980	117902980	+	633.333313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138042.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	2.24287520913333	2.60595178748988	2.39276107863363	2.46136344862928	2.38575206246957	2.6573042566318	0.466053554326069	0.585679543855429	1
Merged-chr6-17408302-4	chr6	17407789	17408789	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55668.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	3.08223979976732	3.13268739439958	3.33013110996234	3.41371081342711	3.43419109397928	3.34571590854318	0.904835334613214	0.144568273715571	0.507348668044083
Merged-chr11-77982559-4	chr11	77982024	77983024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-292.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	7.63761734705386	7.81653143475537	7.6085580414203	7.59033581958841	8.08518507903598	7.66524875402119	0.164583209861257	0.514588332708899	0.843107848235413
Merged-chr4-117133525-1	chr4	117133025	117134025	+	1000.0	f0_c57.idr	intron (NM_001313916, intron 1 of 14)	CpG	438.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	7.27652246565624	7.17525098014806	6.8524316678693	7.31956166232208	6.8419787041304	6.68150297900451	-0.208477189944208	0.480801264518757	0.824825576282389
Merged-chr18-20892312-3	chr18	20891765	20892765	+	558.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177038, intron 1 of 28)	MTE2b|LTR|ERVL-MaLR	3813.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	4.02416872557618	4.29462510841532	3.668409675329	3.89784062769519	3.57160853000916	4.36503346752691	-0.108655721925386	0.859689455049459	0.967423539737178
Merged-chr15-96569326-4	chr15	96568788	96569788	+	820.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72674.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.60908078185488	4.63672644973737	4.49170286316444	4.60127477718658	4.60792747754441	4.87048282411676	0.249347120960203	0.54942645376063	0.860273914502926
Merged-chr8-86852366-3	chr8	86851892	86852892	+	921.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 3 of 6)	intron (NM_030563, intron 3 of 6)	32866.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.72795419354269	3.53700077331776	3.72284493080355	3.48403327754586	3.36255522599522	3.74248330831868	-0.473674546827655	0.413738925216055	0.785359020041643
Merged-chr7-12833966-2	chr7	12833487	12834487	+	655.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360576)	promoter-TSS (NM_001360576)	-774.0	NM_022981	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	3.96792917780062	3.98154755714669	4.389421831333	4.58467742838139	4.60475793360931	4.53910011112331	1.236759040226	0.00811204061467192	0.0869156162072652
Merged-chr1-183803549-4	chr1	183803053	183804053	+	912.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	54576.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.26464191562403	4.78718945833882	4.18581566753129	4.77684798522299	4.79483715220636	4.47000445634374	-0.304984174094292	0.56102039586414	0.865361577760505
Merged-chr18-57844699-3	chr18	57844177	57845177	+	964.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34001.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	5.88256678908068	5.72940394586744	5.46298005976785	5.68918726150953	5.65635570286656	5.33103887694995	-0.247748235641115	0.470155028492671	0.819349466150424
Merged-chr2-73910686-4	chr2	73910267	73911267	+	863.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301721, intron 2 of 4)	CpG	559.0	NM_175015	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	7.30332126588042	7.23409487675834	7.31102051134481	7.38200941609673	7.11366806775093	7.28972252276088	-0.0287361836937897	0.90327326207332	0.977795961230811
Merged-chr1-92933713-4	chr1	92933200	92934200	+	809.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011796)	promoter-TSS (NM_011796)	-708.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	6.53942365185514	6.87138313335564	7.00775157080825	6.9412617592716	7.20078681157106	6.9585925313161	0.35370340861646	0.193639345898837	0.580917166109939
Merged-chr1-106171545-4	chr1	106171035	106172035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040630)	promoter-TSS (NR_040630)	-11.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	6.48970797849232	6.63013662431195	6.28166875931769	6.58093926894042	6.67510806233753	6.46092258033875	0.155030874026928	0.572471462344086	0.869840399318717
Merged-chr7-19666975-2	chr7	19666475	19667475	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1945.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	5.20514411050834	5.0065982701393	5.38202351788273	5.27325447247441	5.40592646628352	5.52851983763659	0.412614984165286	0.248065302991193	0.645132606072547
Merged-chr2-121413807-4	chr2	121413322	121414322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	-30.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	8.45693289244973	8.65455504301794	8.19453180627861	8.34320677675547	8.41497872030599	8.29570064612824	-0.141324192704672	0.531541793577557	0.851711559244379
Merged-chr2-91097845-4	chr2	91097313	91098313	+	799.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1135.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.80180737663441	8.05167977395767	7.86737510988061	8.1071597633372	8.26847742149704	7.88266876463304	0.268250221499963	0.248353559290617	0.645478389539464
Merged-chr6-87876422-3	chr6	87875900	87876900	+	843.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11540.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	3.88475200209523	3.7188085642201	3.88864346842032	3.54979000488598	3.28470546893945	3.81379338631845	-0.94246311736426	0.110556899108779	0.444277427913769
Merged-chr11-94601985-6	chr11	94601479	94602479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-193.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	7.67230671495125	7.655353506572	7.35051403035631	7.45608090411438	7.54358165222652	7.21653656102684	-0.225326099455991	0.35971497170432	0.746001337716324
Merged-chr17-48264015-7	chr17	48263439	48264439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172623)	promoter-TSS (NM_172623)	-356.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	6.8607345161161	6.9204607250732	6.78403469985689	6.81699495748127	6.88251380657125	6.79647404327973	-0.0383738917265129	0.875844018133687	0.971136321106511
Merged-chr7-48909230-2	chr7	48908730	48909730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27634.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	5.54977616677857	5.54541884969615	5.56751793514561	5.41538512393941	5.68672567544592	5.5162726221889	-0.00248407709020193	0.993938437721437	0.998866496397029
Merged-chr10-85003364-2	chr10	85002864	85003864	+	731.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	85751.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	3.13045084724198	2.95005857809559	3.06281296449349	2.72905384607854	2.86371458787083	2.64075939795902	-1.5168883059894	0.0482726156181199	0.278587030125712
Merged-chr2-59242322-2	chr2	59241822	59242822	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	81472.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.69054837773973	4.43838813760518	4.68619725710857	4.5833652622755	4.49348238535512	4.4666655523743	-0.220297387518116	0.604247396288909	0.883017336250368
Merged-chr2-103968486-3	chr2	103967989	103968989	+	887.06665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	ID_B1|SINE|B4	-1068.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.61078416739842	6.79348922868718	6.54459130448734	6.96637712604739	6.81241958057252	6.69007606137061	0.268079793674195	0.307005918319341	0.703099001056797
Merged-chr1-80665349-4	chr1	80664870	80665870	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-18.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.8720511037039	7.0858641208105	6.71005939451624	6.80952327005598	7.23066147610782	7.18669581300935	0.280780493909655	0.305025307834864	0.701294405082021
Merged-chr8-36815029-4	chr8	36814535	36815535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-81981.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.23408803313166	5.87818444366051	5.95669294921263	5.89173800455561	5.69754673414019	5.94755848210623	-0.340510955846741	0.276489675714114	0.673916249833617
Merged-chr4-136180576-3	chr4	136180076	136181076	+	946.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-206.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.18182796367974	4.12323384936147	3.99854113650209	3.60955380193222	3.27551341913727	3.47458576095858	-2.29609921401591	9.81360058362667e-05	0.00278788008659067
Merged-chr4-121212862-1	chr4	121212362	121213362	+	559.0	f1_c57bl6.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	2222.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	2.7666422886391	2.72729694273783	3.04801593618967	2.93396193192846	2.86847220059637	2.8866979844342	0.239302137710252	0.737083361789682	0.933504297835553
Merged-chr4-40142952-4	chr4	40142468	40143468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-297.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	8.19488268016271	8.77324080102078	8.18509000539158	8.31372772131778	8.49926905781913	8.07779805842474	-0.150888666787403	0.572958593272695	0.869934493236159
Merged-chr10-117859596-2	chr10	117859096	117860096	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-13622.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	8.42365302952749	8.48443066757502	7.89200000955987	8.52123957810874	8.87740106045049	8.13737479635676	0.354676185475588	0.217286796617817	0.610996579127954
Merged-chr7-97125520-4	chr7	97125006	97126006	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	43755.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.43120621444109	6.47677245529928	6.36340777214912	6.62044987250955	7.04736244556573	6.48157632416876	0.51978057396769	0.0744688537845914	0.359066140447834
Merged-chr16-62785804-3	chr16	62785313	62786313	+	878.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178925, exon 2 of 6)	exon (NM_178925, exon 2 of 6)	903.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	5.30310103525574	5.20593454806317	5.13773028520267	5.51077601568464	5.57840980964888	5.20318418366334	0.455342322604136	0.196945590903563	0.584827405442477
Merged-chr4-95211991-4	chr4	95211476	95212476	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-159754.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.86059986203996	4.41952132223899	4.44629610321304	4.39219838245904	4.18471703433377	4.28683449551604	-0.790656401505092	0.0872456459853469	0.391624087562645
Merged-chr4-137371913-1	chr4	137371413	137372413	+	767.0	f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-14154.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	5.57228345720241	5.76292267548882	5.84047656439325	5.47844862156358	5.51064641529855	5.4176453476542	-0.470056506345565	0.147613475218834	0.512587515483211
Merged-chr17-80289396-2	chr17	80288896	80289896	+	582.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-816.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	3.72667580373844	4.04346793666059	3.83850321997762	3.79619215118803	3.50873984244243	4.00370302574	-0.327920715192179	0.559887236749561	0.865168019835518
Merged-chr10-80057792-4	chr10	80057291	80058291	+	759.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183426, exon 32 of 32)	exon (NM_183426, exon 32 of 32)	3772.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	3.3864717217336	3.30142348229715	3.62407147303517	3.49953340654338	3.49656063708564	3.12505203132366	-0.18021291520037	0.778601432874462	0.945520893795831
Merged-chr7-27603309-1	chr7	27602809	27603809	+	719.0	f1_c57bl6.idr	intron (NM_001331108, intron 1 of 13)	intron (NM_001331108, intron 1 of 13)	-2488.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	3.20487151563214	3.36165608534706	3.503750782582	3.93445220740639	3.47286991304952	4.06141848729992	1.70682381245851	0.00615015146345482	0.0710259268523454
Merged-chr15-5496152-4	chr15	5495637	5496637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-181.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.01758550924107	6.15364564121058	6.34337665258568	5.94015112802002	6.15543545686438	5.89186882576958	-0.273046935673116	0.365583608325568	0.750709036834083
Merged-chr6-129546077-1	chr6	129545577	129546577	+	774.333313	f0_balb.idr	Intergenic	Intergenic	-12793.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	3.15592028950309	2.70886570841336	3.0554633196514	2.53982180587355	2.56599268602788	2.83574980010244	-1.81513476827171	0.0253023624370621	0.188382155839572
Merged-chr3-31095759-4	chr3	31095274	31096274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 1 of 6)	intron (NM_001039090, intron 1 of 6)	716.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	8.9085180446129	9.01913825987427	8.71779858675837	9.0463166802607	9.30696620325244	8.62082755163095	0.189288851744646	0.451543567202628	0.809149268634971
Merged-chr2-33049063-1	chr2	33048563	33049563	+	602.0	f0_balb.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	37394.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	3.58422403171465	3.49528847734045	3.40777376254851	3.55671905864151	3.62197723285629	3.53608677847079	0.26271525647488	0.644119383186593	0.900067122451665
Merged-chr17-84183606-4	chr17	84183120	84184120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001001806)	TTS (NM_001001806)	4327.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.27911221976112	6.34113616452644	6.47941089584837	6.43937290662667	6.45012190852025	6.43109358827529	0.127567674602436	0.63316614634291	0.895945572329466
Merged-chr5-108670577-2	chr5	108670076	108671076	+	914.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_174870, exon 3 of 3)	3' UTR (NM_174870, exon 3 of 3)	4220.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	3.88238279963882	3.80289264268808	3.4209596629783	3.6275479090449	3.38961290690632	3.66516820921598	-0.563470130102975	0.343438764855965	0.732345474132777
Merged-chr4-55798222-4	chr4	55797719	55798719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-265744.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.06942664782962	5.08706889737643	4.73249026998937	5.0660916487254	5.23512059476983	4.96094579521815	0.246219171174912	0.52567044957099	0.849089311020363
Merged-chr12-24652831-2	chr12	24652340	24653340	+	808.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_178357, intron 1 of 3)	intron (NM_178357, intron 1 of 3)	1469.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	3.67019984891622	3.50838660056442	3.58678829385804	3.31249181056227	3.16436296735611	3.26709678817491	-1.35837324373982	0.0255973628088085	0.189658350170773
Merged-chr9-48163228-3	chr9	48162732	48163732	+	652.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	177666.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	2.40192243139948	2.68537435170992	2.58726628618959	2.41453179369162	2.19850906077957	2.47129233484797	-1.29116099812523	0.137661553944323	1
Merged-chr17-88545465-4	chr17	88544994	88545994	+	923.7160640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 3 of 21)	intron (NM_028658, intron 3 of 21)	15370.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	4.64753517147387	4.90185369930723	4.79329476835276	4.41056662914913	4.56888042007873	4.70761243309574	-0.527578219139412	0.206225361683265	0.596814131014925
Merged-chr3-105800219-2	chr3	105799719	105800719	+	772.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	1162.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	6.65787568744294	6.72554535895145	6.61161412751984	7.42671354999615	7.2657535213553	7.3170796775925	1.01714974581577	2.61137554912429e-05	0.000916437522950375
Merged-chr7-143009499-2	chr7	143008999	143009999	+	609.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3840.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	2.91134095432991	2.58227726599415	2.85247503042035	2.62207056678261	2.74215157330125	2.92481336732995	-0.118566426656696	0.87601010187432	0.971162730906517
Merged-chr6-38917783-2	chr6	38917283	38918283	+	651.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1203.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.25970274962984	4.09895135188015	3.98535510096344	4.16064061619699	3.90633877520934	3.72901043390226	-0.513045855039208	0.325213496920551	0.718048204950518
Merged-chr17-12756082-4	chr17	12755608	12756608	+	704.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13598.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	4.51480811004552	4.49949674353083	4.30973469766108	4.81177841850595	4.6144961138505	4.68416286034747	0.610462445868651	0.150348547862978	0.517246479850651
Merged-chr1-151346215-2	chr1	151345715	151346715	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039511, intron 1 of 7)	intron (NM_001039511, intron 1 of 7)	1717.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.97716232318529	4.06286929458625	4.15070479254428	4.22696845171839	4.35236336382228	3.97290017735286	0.404403314493043	0.408080767569038	0.781926100186554
Merged-chr13-9449217-4	chr13	9448721	9449721	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	172696.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.20276460525308	3.94835207978975	4.0010607771005	4.06621646684223	4.14182059940349	4.34297393299163	0.353855641243047	0.468779680359596	0.818701612865445
Merged-chr7-101454775-3	chr7	101454275	101455275	+	652.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008548, intron 2 of 30)	intron (NM_001008548, intron 2 of 30)	-1287.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.61660020694572	3.09637595994632	3.1406377949356	2.67009059378884	2.74209667688527	3.03338870371331	-2.41239833174598	0.00270691355318773	0.0389362285471411
Merged-chr1-180248619-2	chr1	180248119	180249119	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-2669.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	2.61331092126558	2.50840450066812	2.7714558360051	2.59474788092414	2.7878503713439	2.7841793024859	0.519676307852141	0.494929417752737	1
Merged-chr3-41409026-1	chr3	41408526	41409526	+	803.0	f0_balb.idr	Intergenic	Intergenic	84173.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	6.23417443041438	6.33161969083413	5.63914764179167	5.55850062606727	5.38247476159206	4.99521212716576	-1.39718020947236	0.000294754363730939	0.00686808207709997
Merged-chr14-31373407-2	chr14	31372907	31373907	+	583.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	36769.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	4.74045683359456	4.56051860683625	4.58855829278249	4.65307432702497	4.41453633180987	4.57259178774808	-0.21664578343936	0.607160290550683	0.884448083779426
Merged-chr5-45926157-4	chr5	45925650	45926650	+	978.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110478)	TTS (NR_110478)	6259.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	5.99496743572961	6.35879449592607	5.77812169123111	6.02094404496337	5.7816142307038	6.22840481119994	-0.113803195700383	0.735548344946971	0.932744628746236
Merged-chr10-81221582-4	chr10	81221080	81222080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	9199.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	4.44914973778199	4.45018876889541	4.52316460374691	4.26109462287299	4.27140322097003	4.58891528978255	-0.25798296398472	0.561524940254611	0.865407801976397
Merged-chr2-154215392-3	chr2	154214889	154215889	+	866.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012392, intron 12 of 15)	intron (NM_001012392, intron 12 of 15)	-8353.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	2.22908817059711	2.34403360279253	2.36671337408997	2.20096635308785	1.99647693098043	2.10973601780481	-1.60531185710472	0.0864457259699437	1
Merged-chr2-128711776-1	chr2	128711276	128712276	+	593.0	f1_balb.idr	intron (NM_008587, intron 1 of 18)	B3A|SINE|B2	12861.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.28924313027328	6.53847040968766	6.43404472178933	6.02620043266333	6.31690677243764	5.91689222073253	-0.519181693284923	0.0827867707892525	0.380623363014262
Merged-chr7-25683716-4	chr7	25683238	25684238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	2580.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	6.24008349989141	6.08345276043104	6.7213258160575	6.41565580504561	6.75397977323569	6.73552640180859	0.450358081032589	0.149726929099543	0.516223009447192
Merged-chr17-34130050-2	chr17	34129531	34130531	+	797.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360530, intron 1 of 5)	RMER19A|LTR|ERVK	4513.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	3.51588169559062	3.54992844190796	3.60737727779286	3.37969267263225	3.32992721754811	3.67668252106699	-0.348232081128579	0.552479280625212	0.861745885019732
Merged-chr2-165992012-2	chr2	165991512	165992512	+	949.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	-625.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.86898006148213	5.95789376055145	6.17702617815516	6.40953819092328	6.30606839780733	6.08656354814863	0.479324174651586	0.105405957387057	0.433339508714069
Merged-chr1-150393208-4	chr1	150392720	150393720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145511)	promoter-TSS (NM_145511)	-140.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	8.06296489952921	8.23279052975757	8.10350467148561	8.0673400770519	8.13920890557899	8.08981045823439	-0.0516183321494859	0.804375208161256	0.953645244705356
Merged-chr10-19613389-3	chr10	19612939	19613939	+	925.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-8589.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	5.35614584947591	5.24442559581405	5.31715594545747	5.51731496095856	5.36803855685431	5.63693768875449	0.384026146513726	0.25669018278832	0.653737977781352
Merged-chr1-167337929-4	chr1	167337458	167338458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12033.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	7.29324139946318	7.41948034545798	7.3147548292426	7.02304914035	7.64056521618235	7.00675030486678	-0.105215303341105	0.711683271555838	0.92478339732604
Merged-chr5-52743472-4	chr5	52742975	52743975	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1901.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	5.57682346722986	5.93891722182909	5.34422230025271	5.09218273219786	5.12959802780627	5.31203967348325	-0.935130369722953	0.0108423974780743	0.106375923753756
Merged-chr17-5933566-2	chr17	5933066	5934066	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-7714.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	2.61610332677425	2.50530398604577	2.86050310242073	2.45277637456607	2.46198742358669	2.93237085024658	-0.185618196413024	0.82230630627768	0.958041123079214
Merged-chr2-127003458-2	chr2	127002960	127003960	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5251.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	3.83376069832205	3.57595313764639	3.94103294688438	3.38508182691954	3.24036791863923	3.51503225926994	-1.50618621415641	0.0121538915460698	0.11524797809292
Merged-chr17-17883248-2	chr17	17882748	17883748	+	567.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	691.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	7.08404597850667	7.10012869498503	6.92555924703661	7.20782293402607	7.57771837270725	7.67949253155297	0.68223734862571	0.00779869743338781	0.0845615934086816
Merged-chr10-94199006-4	chr10	94198523	94199523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025551)	promoter-TSS (NM_025551)	14.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	7.61125542481732	7.71941318504475	7.42630124348304	7.29974933601461	7.54048564539261	7.12588981365709	-0.370148907323529	0.139609832899369	0.499301268000938
Merged-chr4-138000891-2	chr4	138000372	138001372	+	584.166626	f0_balb.idr|f1_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	3047.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.50892328960726	4.3634506361132	4.48500213852051	4.35178986237161	4.1484156419491	4.33843222343297	-0.462761254318532	0.30071244894174	0.697410152504161
Merged-chr6-113659423-2	chr6	113658923	113659923	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	ID_B1|SINE|B4	20956.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	6.77792673173379	6.75431072424525	6.92832910507568	6.69724797220847	6.87295705986987	6.63879677915417	-0.107825844953796	0.674187170251809	0.911841916826811
Merged-chr8-13504410-4	chr8	13503903	13504903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9868.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	6.305400949481	6.17051010838217	5.97246062126558	5.58326492155098	5.51428053494999	5.67848699434826	-1.02824122189644	0.000840043845674598	0.0157110290651589
Merged-chr7-141168834-4	chr7	141168327	141169327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172101)	promoter-TSS (NM_001172101)	109.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	7.21169573234595	7.45192987436357	7.27944489001786	7.22000476712507	7.42113860239795	7.07608671669413	-0.0959578900001334	0.698761570740519	0.920452394037037
Merged-chr10-125370293-4	chr10	125369799	125370799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-41336.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	7.55258532360752	7.94600872750301	7.30049093993641	7.67950101641973	7.90210872915378	7.24619472187715	0.0156830083922768	0.957793589707434	0.990000537228272
Merged-chr15-51991824-4	chr15	51991315	51992315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-55.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	7.6075487357698	7.54317359538649	7.28369947569167	7.61619119737925	7.63015352863712	7.039466275882	-0.0343260950065557	0.900276856177114	0.976731893119283
Merged-chr9-22143318-4	chr9	22142819	22143819	+	848.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7573.0	NM_001102405	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	4.98129225670182	5.46762894631699	5.19609449151788	5.26513771962513	5.32213946889202	5.22729705422994	0.0784015054692976	0.832561582481087	0.960642651289435
Merged-chr4-148498842-4	chr4	148498325	148499325	+	965.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039554, intron 1 of 4)	B2_Mm1t|SINE|B2	1637.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	5.77078141556791	5.78233136458866	5.77061995714887	5.19086769972866	5.08272722028417	5.39802377774836	-1.07476061500619	0.00125514322660135	0.0215059744013632
Merged-chr18-66436775-4	chr18	66436272	66437272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21832.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	5.95798795639233	5.60187304915435	5.34749185220824	5.73385673397371	5.88725492599253	5.37896296220948	0.0442262297964461	0.904721914256353	0.978159081111766
Merged-chr16-10488586-1	chr16	10488086	10489086	+	694.0	f0_balb.idr	intron (NM_007575, intron 1 of 18)	intron (NM_007575, intron 1 of 18)	408.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.7409511806155	4.68847838329184	5.05992290032331	5.22489754755579	5.58819319002055	5.43519454791459	1.25963562921961	0.000924246521690414	0.0169261696843373
Merged-chr9-22155774-4	chr9	22155293	22156293	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1053.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	3.43525781758098	3.58167660360283	3.48144585026346	3.64532392545449	3.43428589788471	3.75874981994855	0.392824266365348	0.496170851232243	0.832887171202415
Merged-chr10-8785066-3	chr10	8784548	8785548	+	686.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 6 of 19)	intron (NM_175155, intron 6 of 19)	101022.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.94118480716029	2.64373419653876	3.24294067478984	2.87394477932183	2.80241525787905	3.31336718527188	0.224173227551896	0.773760881018795	0.944183453856367
Merged-chr3-142575053-2	chr3	142574553	142575553	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	14697.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	2.65728425220708	2.6870490712095	2.97582496089884	2.62667175672263	2.74814583345226	2.99134192104751	0.0881487473261357	0.907130630763924	0.978868492078838
Merged-chr13-59834908-3	chr13	59834388	59835388	+	925.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11741.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.18158595943432	3.57512432663234	3.92884351156179	3.31275882262754	3.22814469041541	3.48062566513916	-2.1299862368089	0.000750148491264612	0.0144386665882826
Merged-chr9-65346669-4	chr9	65346163	65347163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016688, exon 1 of 5)	exon (NM_016688, exon 1 of 5)	595.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	8.77720998335218	8.61995414284564	8.68636134312777	8.62095835703227	8.28345552795882	8.59631498223297	-0.263555623176477	0.223985571931146	0.618756596266412
Merged-chr1-39594362-2	chr1	39593862	39594862	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17015.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	3.00357366717214	3.09326573711676	3.13641986380967	3.07312528627511	2.95286744447947	3.03303034976595	-0.266352963673298	0.686215385443144	0.916610846457002
Merged-chr2-132102876-4	chr2	132102390	132103390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	42218.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	8.92815493027567	9.1575045248645	8.54587217858043	8.71407689614355	9.31214826238248	8.44501560254929	-0.0277983751175267	0.925705928471175	0.983266386206129
Merged-chr11-116656867-2	chr11	116656367	116657367	+	772.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163318)	promoter-TSS (NM_001163318)	-241.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	3.4119455698241	2.95524000062381	3.5499855785893	2.89004652578571	3.14634899498915	3.14086034557747	-1.09282906036304	0.128946057462547	0.480210515568349
Merged-chr6-98105462-4	chr6	98104976	98105976	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113693.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.86968457003371	4.15353246830649	4.01331811386696	3.91640018421075	4.08162904408471	3.93371433305328	-0.102535131339062	0.838899547525108	0.962619500530269
Merged-chr19-4192902-2	chr19	4192402	4193402	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031868, intron 2 of 6)	intron (NM_031868, intron 2 of 6)	728.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	4.73750583111635	4.89071841838448	5.16462041398704	4.81071312324172	4.81971051780504	5.03688476566623	-0.101198832657929	0.799766614937325	0.952280212549411
Merged-chr6-97803837-4	chr6	97803349	97804349	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3209.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.68942164111948	5.84050466692434	6.01204108249414	6.22429162185693	5.9925985201863	5.9818808239523	0.396239293319178	0.195234265740877	0.582885610090219
Merged-chr12-112627122-2	chr12	112626622	112627622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7075.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	3.13763377644579	3.19571013886779	3.40441906238885	3.25963892488832	3.10277408255687	3.01607691945187	-0.479091738978418	0.463591847016088	0.816012658794099
Merged-chr12-111894235-3	chr12	111893736	111894736	+	692.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	L2c|LINE|L2	13819.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	3.34546066024416	3.37113910532001	3.38307868540616	3.55149114934362	3.41199704044492	3.50926404048698	0.470732192380019	0.419095247566307	0.788801788481746
Merged-chr17-65612660-4	chr17	65612153	65613153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	CpG	902.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	7.28089349786051	7.23834583962652	7.17297321505536	7.39460430314154	7.23673418772586	7.31282517028588	0.119726140672126	0.603847225511283	0.882837513989345
Merged-chr5-45495844-2	chr5	45495344	45496344	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 2 of 12)	intron (NM_024434, intron 2 of 12)	2470.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	3.00845237030408	2.86990351771592	3.01934572351884	3.1336065648451	2.84466104732212	2.97199628341925	0.0988514067369015	0.88593229216724	0.973636976161493
Merged-chr4-141998510-2	chr4	141998010	141999010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	MLT1K|LTR|ERVL-MaLR	13141.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	4.8173565057038	4.84791501757549	4.9909550507588	4.82303877147486	4.98930718457374	4.83864944948786	0.0241716843461563	0.949917491351962	0.988334422516281
Merged-chr2-73311939-2	chr2	73311439	73312439	+	567.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	653.0	NM_025854	66935.0	Mm.292140	NM_025854	ENSMUSG00000041777	Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding	5.64373979296402	5.68712381107949	5.73181314825649	5.83601764179782	6.15431893163785	6.22066068836997	0.696472821737668	0.0246959103104628	0.18556052962913
Merged-chr8-84416015-8	chr8	84415507	84416507	+	869.0416869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	(TCC)n|Simple_repeat|Simple_repeat	643.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	6.49414918533218	5.74724454116765	5.81834544184192	3.96148716563881	3.63580923968033	4.26180932966185	-6.41496507338038	8.4885377490551e-16	2.73765212799758e-13
Merged-chr9-65573615-2	chr9	65573115	65574115	+	738.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	6472.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.19036615453486	5.03761442290748	5.63813723668553	5.40899391505752	5.35472145575581	5.37334286810616	0.157991573124447	0.671571590434115	0.910546279207362
Merged-chr7-43553318-4	chr7	43552814	43553814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-9056.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	3.82874832350446	3.75583533184821	3.73351151978904	3.78055716511325	3.62779817629943	3.75148947812344	-0.190917913377317	0.719068949088075	0.927652639255676
Merged-chr14-120293234-3	chr14	120292687	120293687	+	834.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-13265.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.91360298691401	3.88177321012486	4.06565079107187	3.58797483781628	3.56109713450111	4.21729403882593	-0.423900320550977	0.4645752372628	0.816459397744841
Merged-chr2-36235470-2	chr2	36234970	36235970	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	5044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.59097192129927	6.46887543634607	6.64188169223206	6.930502170287	6.86852870826181	6.58158937376176	0.386319399074533	0.145111845536468	0.508163227279931
Merged-chr11-58328297-2	chr11	58327775	58328775	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001256520, intron 1 of 2)	MER67B|LTR|ERV1	2064.0	NM_001256520	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	5.01522136253975	5.07910425359248	5.12309133457644	5.07527293675315	5.1544452337374	5.58930999927739	0.431097104815323	0.254663229789359	0.651733347039445
Merged-chr8-41019870-4	chr8	41019338	41020338	+	974.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015457, intron 2 of 2)	B3|SINE|B2	2370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	6.01852642738218	6.21789273630906	6.12741005236963	6.99436538464769	7.06385524695056	6.76736008430884	1.32938943813142	8.83044592690682e-07	4.86920970633574e-05
Merged-chr15-6547648-2	chr15	6547148	6548148	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32199.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	2.85875155084471	2.97284518952417	3.0383844395281	2.84831668461203	2.88308274463651	3.37765223359022	0.43166117028167	0.548649492260449	0.859882596899804
Merged-chr18-24223733-4	chr18	24223264	24224264	+	931.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 1 of 12)	intron (NM_001361200, intron 1 of 12)	17770.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	5.65694411015181	5.63909462006538	5.85258740321374	5.76859095387652	5.63642177861588	6.02529021335963	0.173755132995442	0.590019953091159	0.8770612451195
Merged-chr5-48372383-4	chr5	48371885	48372885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025755)	promoter-TSS (NM_025755)	-7.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	5.60993859156092	5.63310328974749	5.78653615780714	5.67374460237109	5.33809390245988	5.72393261401267	-0.177467206046325	0.595044855916145	0.879299798807838
Merged-chr13-81108657-4	chr13	81108175	81109175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	144601.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.77253091072267	7.02723241912132	6.84767910089467	6.66740135692447	6.8984899471132	6.47056755496869	-0.288826716256909	0.291130066004173	0.68893551368168
Merged-chr3-105720307-2	chr3	105719807	105720807	+	654.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175398, exon 2 of 2)	3' UTR (NM_175398, exon 2 of 2)	14849.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	3.03230469516375	3.01373830065412	3.0515502180804	3.22015709041037	3.07724385270865	3.12421094382459	0.486047221379977	0.453845498631718	0.809979841654596
Merged-chr2-16335464-4	chr2	16334971	16335971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20833.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.38630747343352	4.71322643593057	4.3294490617221	4.43668979944914	4.3407927695607	4.52878254818115	-0.164356675060397	0.714777246016183	0.926044950792719
Merged-chr2-129398454-4	chr2	129397963	129398963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16|LTR|ERVK	-27324.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	4.19180102982814	4.49217933881798	4.16990740712987	4.51013516097924	4.74723471523886	4.51728780158415	0.758129194085419	0.0965960222084738	0.414325490079944
Merged-chr6-89413720-4	chr6	89413212	89414212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-51099.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	5.06204264558833	5.09905846201056	4.90047267104342	5.17102941203491	5.13098522696615	5.24454873483531	0.308715780091219	0.394689600197604	0.772514857254462
Merged-chr3-156559372-2	chr3	156558872	156559872	+	581.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NR_040400)	TTS (NR_040400)	2315.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	2.65604936426979	2.43153033484793	2.55610012308771	2.73608283739554	2.86030882667658	3.16601477990438	2.06860213552133	0.0114209052036681	0.110424201741438
Merged-chr2-167588030-1	chr2	167587530	167588530	+	549.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	43975.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	5.17526971456632	4.98280763061915	5.12734820326793	5.15061005991154	4.88294186859024	5.05584224328661	-0.141970456634572	0.703251186914995	0.922108924938678
Merged-chr16-33690884-2	chr16	33690384	33691384	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	6418.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	4.74745174622852	4.19488718098003	4.57203648552367	4.84609182634573	4.57423095033701	4.83180864785613	0.53791008817918	0.23567539202793	0.631930846218742
Merged-chr18-62253999-4	chr18	62253478	62254478	+	889.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70226.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	3.72648656171301	3.43640537008491	3.56872935592375	3.5657585143258	3.70287278895354	3.58515247617214	0.137541266686851	0.808571819778425	0.954713910404609
Merged-chr3-89715394-2	chr3	89714894	89715894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357958, exon 1 of 15)	exon (NM_001357958, exon 1 of 15)	156.0	NM_001357958	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	4.06722120515949	4.40222083525338	3.91794360665767	4.5310365637325	3.94258362368256	4.04383812823365	0.133034146946633	0.80610203878378	0.954102910475772
Merged-chr18-66459781-3	chr18	66459283	66460283	+	709.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021451, intron 1 of 2)	PB1D10|SINE|Alu	1179.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.30111183971424	6.81174402550165	6.34843492162357	6.55821309708823	6.8015361980763	6.09943402587413	0.0254491388881651	0.939102136344476	0.986604659958455
Merged-chr14-59341408-4	chr14	59340906	59341906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164327)	promoter-TSS (NM_001164327)	-76.0	NM_001164327	236451.0	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	7.05414017868385	7.16687005171365	6.5077669511781	7.1998999267447	7.2599508582897	6.95481249360498	0.297226076965794	0.306052608804238	0.7020655990236
Merged-chr2-90544920-2	chr2	90544420	90545420	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35727.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.64580518420746	6.22475064678774	6.13898481844435	6.59235509140434	6.49823511933331	6.24439503025901	0.152824188941215	0.616876075876787	0.888583476526543
Merged-chr1-184563081-4	chr1	184562577	184563577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5386.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.47727820514099	6.15671118748627	5.94754977521884	6.03011485011138	5.95075005499582	5.52907168333844	-0.609330297088237	0.0715512579244497	0.350858143464767
Merged-chr1-152594880-4	chr1	152594374	152595374	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	30343.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.1828917226929	5.84574411399605	6.08201567970431	6.01892909202011	5.56781878004104	5.84221011508473	-0.39736683032005	0.222278643517596	0.617225566059783
Merged-chr6-13678073-4	chr6	13677562	13678562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175312)	promoter-TSS (NM_175312)	-96.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	7.30199356393436	6.99158928137569	6.6654112337657	7.14148451494087	6.85182159948588	7.04261880079235	-0.0131344097884431	0.963209930910244	0.991082197093192
Merged-chr15-8340791-4	chr15	8340316	8341316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103647.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.75637629444804	6.3258693110786	6.01970285324357	6.04688147623311	6.11832727518943	5.86368653219	-0.0693922029936745	0.831671498737578	0.960478468368024
Merged-chr19-10861640-2	chr19	10861140	10862140	+	742.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133804, exon 8 of 11)	exon (NM_133804, exon 8 of 11)	8139.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	2.38163950871155	2.17748794560574	2.53694335254211	2.09411775313314	2.26044286985196	2.16327989231846	-1.32948450323957	0.151239922407643	1
Merged-chr7-121271273-3	chr7	121270763	121271763	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-121033.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	4.30672670879255	4.22031887169304	4.62236367499593	4.02834845984104	3.99700742664075	4.53995630428617	-0.496262110933354	0.326877417027434	0.719183905339082
Merged-chr15-59743796-2	chr15	59743296	59744296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51163.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.08593263414463	6.78074574155707	6.8088746828646	6.59699140223385	6.81830623602723	6.66124760117392	-0.314676508195633	0.234557433307038	0.630660642731509
Merged-chr4-43384257-3	chr4	43383757	43384757	+	956.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	2275.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	5.74085397718201	5.70456749060967	5.07497167841621	6.0194353264987	6.38052735442548	5.85795820425933	0.98673517402789	0.00941442550504942	0.0964842366577352
Merged-chr9-57761911-2	chr9	57761411	57762411	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3949.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	3.11789337285418	3.03839784380988	3.16954894197021	3.07338473390173	3.26070272779175	3.29682613697616	0.45677366699994	0.476312211864053	0.822520021424582
Merged-chr7-28440912-4	chr7	28440385	28441385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039192)	promoter-TSS (NM_001039192)	-52.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.16688295622933	6.93860127791249	7.14369885668132	6.97725014099617	7.17201192658927	7.33779898600861	0.123869355292367	0.62345969383985	0.891427938597819
Merged-chr2-75684337-2	chr2	75683837	75684837	+	727.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	20326.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	4.84202308522539	4.88495584612389	5.00004974644872	4.63495666051996	4.84033229360728	5.19088636527839	-0.0169151774194955	0.966862976017569	0.992385830518452
Merged-chr13-117024557-4	chr13	117024107	117025107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 2 of 26)	CpG	909.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	7.04068736931759	6.47384699804427	6.62237330535675	6.98244111015084	6.7059333883953	6.46337389548651	-0.000148017271650539	0.999616168220581	0.999920050950963
Merged-chr10-75228394-2	chr10	75227894	75228894	+	767.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 2 of 18)	ORR1D1|LTR|ERVL-MaLR	16004.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.22644653349324	3.80885843232527	3.81925730070077	4.36952541895781	4.26337419307643	4.05241049308514	0.7510611704455	0.149782695879873	0.516263772882702
Merged-chr14-50865552-1	chr14	50865052	50866052	+	590.0	f0_balb.idr	intron (NM_009351, intron 4 of 54)	MTD|LTR|ERVL-MaLR	5002.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.00790667086303	5.07422762565164	5.19942446789343	5.27849909009983	5.25767317366641	5.32541674047477	0.40111838993045	0.253884261133784	0.651117231535132
Merged-chr8-8704995-4	chr8	8704502	8705502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-14465.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	3.59997431428123	3.45740610681606	3.53547549188902	3.71336522186999	3.30920225216487	3.71072427537294	0.18752260497228	0.75197547974611	0.938030338790992
Merged-chr7-81204759-4	chr7	81204338	81205338	+	686.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8966.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.13894000796796	3.81027339634815	3.84420862661108	3.88484901881295	4.0656275501616	3.63641197076088	-0.179373335563949	0.745154099527062	0.936032341688524
Merged-chr9-44305242-2	chr9	44304742	44305742	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172162, intron 1 of 9)	intron (NM_172162, intron 1 of 9)	429.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	6.91698444977228	7.29678567587295	6.89267408475371	7.01833849216256	7.13856302921347	6.58788335432762	-0.164005883159967	0.571590856395488	0.869547320544841
Merged-chr12-111071257-4	chr12	111070762	111071762	+	963.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	31464.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	7.25264758241396	7.40785659298601	7.22770824385884	7.24748220680947	7.75202287297595	7.27327197311285	0.229623594893226	0.385466104726974	0.766526531581388
Merged-chr1-128006420-3	chr1	128005951	128006951	+	857.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 8 of 20)	intron (NM_001285945, intron 8 of 20)	96020.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	2.3875637021342	2.73958906344894	2.388761339429	2.56930182452596	2.44680883126741	2.6597056642815	0.218512055251272	0.793688477830216	1
Merged-chr19-37172925-4	chr19	37172423	37173423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-920.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	5.67438835897361	5.63565421513315	5.50473968316156	5.93753159530281	6.10585704576592	6.14122076313544	0.800785204655585	0.00892711949985823	0.0930350400980476
Merged-chr10-128176658-4	chr10	128176160	128177160	+	980.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-92.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	7.15919117105751	7.24473514813584	6.74949768097893	7.21402197173255	7.39830762365098	7.00801185107237	0.217801505633907	0.425930634333255	0.793463399937346
Merged-chr6-32487566-4	chr6	32487071	32488071	+	948.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-23570.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.5880786065784	3.37920360878319	3.52247454397612	3.16160752943104	3.1592629151521	3.20149200555911	-1.32710663826605	0.0333889957649334	0.222989931744809
Merged-chr11-40691546-2	chr11	40691052	40692052	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199274, intron 1 of 6)	MTC|LTR|ERVL-MaLR	1130.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	3.90273889810684	3.91920515629865	4.10346757533647	3.9070861955352	3.8071797757677	3.93785703337609	-0.280896247448586	0.5782044380792	0.87240217022728
Merged-chr14-8102763-4	chr14	8102234	8103234	+	922.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	4523.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	5.60457727810894	5.60583913376249	5.5612821020905	5.73636678350814	5.51666081689154	5.50797797681624	-0.000857308982631371	0.997875327018798	0.999579683478894
Merged-chr5-130172470-4	chr5	130171965	130172965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	646.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	8.49360067223986	8.77173588406793	8.25902869249534	8.47085394641828	8.42170814966876	8.19457543420997	-0.222645527907791	0.350121566683987	0.738177163457543
Merged-chr2-35111243-3	chr2	35110732	35111732	+	747.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	1740.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	5.27436450924733	5.00886541598818	4.61117068417226	4.87250077716128	4.94189579839466	5.14087267797758	-0.0448843175861061	0.914637941166255	0.980912729144991
Merged-chr1-143992752-4	chr1	143992360	143993360	+	971.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MYSERV6-int|LTR|ERVK	11289.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.51570452879424	5.58005346303581	5.9139314985925	5.56516039326558	5.68032073997349	5.95231808941001	0.118167118342887	0.726040859023749	0.929743505822386
Merged-chr18-39488513-2	chr18	39488019	39489019	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1274.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.57017714882466	5.50035206984277	5.54877822668619	5.82645477629	5.71899928629092	5.55380085957129	0.317728870724967	0.319663223735412	0.713586133471515
Merged-chr16-85116446-2	chr16	85115946	85116946	+	653.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	57261.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	3.10964934026536	3.08698658051149	3.16174197126277	3.30925764487132	2.88438432335423	3.34513042316724	0.308083993575961	0.650747505460474	0.902668504553081
Merged-chr15-84325296-4	chr15	84324756	84325756	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	536.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	7.02680177857217	7.32800726164164	6.58315756804802	7.45509184152973	7.40333538649607	6.62423399846564	0.296694822574197	0.386350444129146	0.7670957276677
Merged-chr7-97081609-4	chr7	97081065	97082065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-186.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	8.10548534251462	7.93102300458757	7.47670942178788	7.89047905944149	7.71491472764138	7.62597130175181	-0.175994254003847	0.499683849867855	0.834687375989398
Merged-chr12-100538637-4	chr12	100538131	100539131	+	819.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17809.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	2.94583649141092	3.07510258785831	3.08821282082394	3.30650229524238	2.95999667003485	2.97819633109241	0.247326457434352	0.716572935252282	0.926711234014173
Merged-chr8-70674885-2	chr8	70674385	70675385	+	702.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	intron (NM_015816, intron 1 of 4)	1654.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	5.06830204035723	5.16204020959055	5.10260954790317	4.75642039225413	4.72178108045435	4.64058171061762	-0.88934833316223	0.0199964069276594	0.161383222855159
Merged-chr12-89354870-2	chr12	89354370	89355370	+	815.766663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198587, intron 9 of 19)	intron (NM_001198587, intron 9 of 19)	401480.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	2.46740560372423	2.49350172395573	2.35644535756345	2.66738893387188	2.35888375181485	2.62881101653947	0.670933406957146	0.415729260160658	1
Merged-chr9-41168344-2	chr9	41167844	41168844	+	674.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10282.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.18579520661092	3.12821390245774	3.50655768693408	3.09363445103837	2.8989931493196	2.96770431840595	-1.28626866712802	0.061181103947027	0.320792298907424
Merged-chr6-97395574-2	chr6	97395074	97396074	+	590.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	63712.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.19409315932616	5.38026258086746	5.62418710257477	5.32504930561112	5.24052984327881	5.65985316685754	0.0155613745948388	0.966041360792999	0.992207077743977
Merged-chr2-143903806-3	chr2	143903331	143904331	+	831.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	2.79100176550238	2.59172251455793	2.56449715974301	2.62680224701999	2.48518059500256	2.88487343134218	0.0857463953483622	0.913678723116113	1
Merged-chr5-100429653-4	chr5	100429162	100430162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_034038)	promoter-TSS (NR_034038)	-127.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	6.42572140533359	6.93955627992535	7.18587068158082	6.76475595325295	6.90363148469392	6.92079081207041	-0.027025829370731	0.928383777864752	0.983802612059568
Merged-chr3-5575005-2	chr3	5574505	5575505	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008994, intron 1 of 5)	intron (NM_008994, intron 1 of 5)	1243.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	5.4047758014387	5.90554946911481	5.60226067147091	5.74257088285387	5.57000967160142	5.79590956202147	0.073179570099569	0.830656613977639	0.960367055687527
Merged-chr4-59036292-2	chr4	59035792	59036792	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1136.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	5.56648446807803	5.34415174510639	5.68469034639472	5.00348958279254	5.23826398236083	5.42722388402538	-0.597091824557517	0.0979447863070658	0.417291460898387
Merged-chr10-17925343-2	chr10	17924864	17925864	+	666.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	22703.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	2.85432415318821	2.8100471017556	2.76729059453	3.10949511051045	2.81187002417642	3.02706532793072	0.840290210333238	0.237775621767247	0.634352942896826
Merged-chr4-43442256-4	chr4	43441773	43442773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011571)	promoter-TSS (NM_011571)	-4.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	7.45139381477227	7.70393706473279	7.43073397408569	7.44192207542572	7.58872163403238	7.3679184003981	-0.0942883129817302	0.690986369234275	0.91810797475801
Merged-chr17-35870409-4	chr17	35869921	35870921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3806.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	6.70023341148627	6.66232758834784	7.25058143654479	6.89096266941474	7.00312397201135	7.34983188137657	0.30605009724827	0.307035099238437	0.703099001056797
Merged-chr19-9976392-4	chr19	9975905	9976905	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4195.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.27691293456861	6.2504481517824	5.80010347377752	6.08793509207017	5.98983456863569	5.72329317480936	-0.32393679634943	0.315126932523862	0.70945648744508
Merged-chr10-63428826-3	chr10	63428352	63429352	+	844.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	3.48370809607306	3.61050309981164	3.54937012181235	3.70542876186436	3.46358927860128	3.20399278549372	-0.254283232718004	0.680410996161443	0.914217125833247
Merged-chr11-75649426-6	chr11	75648926	75649926	+	857.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008916)	TTS (NM_008916)	-2083.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.19961782882838	5.37060516706268	5.56264504628635	5.31469950412956	5.25296084833997	5.5977699574496	0.0181306420736451	0.959440342037928	0.990200345348868
Merged-chr3-95668175-4	chr3	95667683	95668683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9462.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	8.33859786158484	8.15004136361605	8.0577600208272	8.03978841581972	8.30173942623538	8.13481769499199	-0.034383190782443	0.877120810689211	0.97149375595112
Merged-chr6-83775856-4	chr6	83775369	83776369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009357)	promoter-TSS (NM_009357)	-57.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	6.16220044176152	6.18483156323569	6.31566936781326	6.16579295132628	6.06618001896142	5.97215876157663	-0.243673571600895	0.391609368855239	0.770659674653676
Merged-chr2-58933550-3	chr2	58933058	58934058	+	911.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	178374.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.73466942136933	4.03846979503694	3.70933088089757	3.34586218676259	3.78177925179102	3.67318023007712	-0.734218177321476	0.216595928853822	0.610084765176155
Merged-chr7-45466797-4	chr7	45466291	45467291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007527, exon 1 of 6)	5' UTR (NM_007527, exon 1 of 6)	107.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	6.99456714185063	7.19550458726968	7.14306884945186	7.00681905682363	6.7886600948142	6.80445288479394	-0.370597268790685	0.136595547540535	0.493740502092718
Merged-chr7-102234160-3	chr7	102233654	102234654	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	11126.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	5.0398433103415	4.53851803171355	5.11991692835924	4.7432061276549	5.02813314645207	5.15182201002096	0.141246112646833	0.741073290837599	0.934742147011145
Merged-chr3-8995408-2	chr3	8994915	8995915	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	8789.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	2.89948692228232	2.76248880285309	3.13120183157947	2.92385866128637	2.96946021057108	2.7916312729181	-0.160712684375067	0.823451492142637	0.958366850481353
Merged-chr5-35757809-4	chr5	35757300	35758300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-80.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	5.01088607847145	4.87701174805009	4.71393937874094	4.88125244222775	4.68065965706718	4.96939956786635	-0.0910585854359181	0.819458485297469	0.957283576025177
Merged-chr10-30200569-4	chr10	30200079	30201079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109747)	promoter-TSS (NM_001109747)	-39.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	3.99688053913113	4.35700875284886	3.86697766428016	4.43728657330199	4.13226097577954	4.14819410512987	0.403200338486129	0.434714460083892	0.798628466396473
Merged-chr17-67304449-4	chr17	67303936	67304936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	50023.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.32376483609027	6.35540252617514	6.10527985182502	6.96073207145502	7.20097623847751	6.95268123403331	1.21868857568414	5.91068169026137e-06	0.000255091287387587
Merged-chr3-90246970-2	chr3	90246470	90247470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-1222.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	3.50118623430647	3.79160617411063	3.63256351210007	3.49479318272422	3.39741154851355	3.85037118412941	-0.218010191958746	0.712059129625447	0.924891945289204
Merged-chr19-5662167-2	chr19	5661667	5662667	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164480, intron 1 of 16)	B1_Mus1|SINE|Alu	1540.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	5.98909564862105	6.18002836039334	6.08666447728507	6.34174636809981	6.63958132266525	6.39413620091	0.637441274738983	0.0254859528167639	0.189279578594091
Merged-chr10-4433615-3	chr10	4433182	4434182	+	846.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024261, intron 1 of 4)	intron (NM_024261, intron 1 of 4)	1077.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	4.56031915416236	4.70411673452329	4.82788192115441	4.61762298522901	4.58373210176322	4.4114627282508	-0.359897688746144	0.392948022593979	0.771425512588747
Merged-chr5-23432100-2	chr5	23431600	23432600	+	696.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	2253.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	6.53448743483355	6.43293568678292	5.97439491144731	6.85758159772649	6.83861485462971	6.49932522241777	0.635922682374788	0.0367008926307658	0.235815597050767
Merged-chr9-120582372-3	chr9	120581862	120582862	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5031.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	5.70747688860443	5.858752617649	5.87655094101477	5.64624222751803	5.70403008362226	5.51214773253984	-0.332766342627092	0.289605603705454	0.687296395388689
Merged-chr6-136806730-2	chr6	136806252	136807252	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1496.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	3.78325888905571	3.66533821329449	3.73791921588458	3.76313170784519	3.98915459356383	4.00544720054821	0.62102773694045	0.23595998018228	0.632279217060081
Merged-chr10-128490302-2	chr10	128489802	128490802	+	953.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010860)	TTS (NM_010860)	2707.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	5.00265137657838	5.12114818021123	5.40535466262966	5.2680544500955	5.44648034609767	5.49577713133561	0.461772373563532	0.199121923047903	0.587495105771573
Merged-chr3-19310868-2	chr3	19310368	19311368	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001122759, exon 1 of 13)	exon (NM_001122759, exon 1 of 13)	454.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	6.57385469850802	6.21050426557062	6.60167273033776	6.56843290958781	6.48649449024778	6.31651569170615	-0.0031566232125017	0.991208512584587	0.998206241771275
Merged-chr5-20951892-4	chr5	20951384	20952384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080977)	promoter-TSS (NM_001080977)	-62.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	7.69349404679917	7.74123138029208	7.64081858533052	7.67914932393119	7.73793469973721	7.65109342566898	-0.0037071536972295	0.986283578409905	0.997033990984076
Merged-chr5-92281203-2	chr5	92280703	92281703	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3022.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	2.57018941699445	2.78718951030317	2.92202531055159	2.6753599833855	2.52935917158462	2.81994802160088	-0.474074335062212	0.538784863281288	0.855475830625121
Merged-chr4-5644562-1	chr4	5644062	5645062	+	871.0	f0_balb.idr	intron (NM_173426, intron 1 of 2)	CpG	472.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	5.15382703687765	5.20506321504287	5.11954458244079	4.855632988741	4.63962899439926	4.97853919454178	-0.74608321228462	0.0501762410089185	0.285159854855906
Merged-chr11-23023339-3	chr11	23022847	23023847	+	711.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028672, intron 3 of 3)	intron (NM_028672, intron 3 of 3)	9960.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	3.6077532024097	3.89370789225659	3.6851276818245	3.7349265465038	3.51859561986437	3.64885193673704	-0.354480500122055	0.524516971750907	0.848725345027108
Merged-chr11-59847332-2	chr11	59846832	59847832	+	711.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134029)	promoter-TSS (NM_134029)	-741.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	3.2365757634562	3.47006458447053	3.68229791872809	3.18417066966077	3.20567056158403	3.40432136736012	-0.823966521150945	0.193876856179434	0.581211465952526
Merged-chr8-13596172-5	chr8	13595570	13596570	+	909.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-33609.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	6.69226465567897	7.01818508914249	6.97126136304563	6.47903990839259	6.71443876733252	6.64594290769638	-0.439007174516442	0.100756762609648	0.42330130237324
Merged-chr19-8980971-4	chr19	8980475	8981475	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8309.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	3.93862820779773	3.65179362379868	3.85244480747829	3.72442986295365	3.39208559930046	4.05938093838995	-0.234334376202846	0.693014429890099	0.918821916893121
Merged-chr15-97213298-4	chr15	97212806	97213806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33801.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	6.01967123534574	6.24937088076615	6.11509740282222	5.97324926200203	6.13175362830257	6.04280749443013	-0.134926821910689	0.642175467051856	0.899352614913166
Merged-chr8-84857341-3	chr8	84856833	84857833	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152751, intron 1 of 12)	intron (NR_152751, intron 1 of 12)	347.0	NM_025648	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	6.81127967726225	7.00265023620916	7.01032388885461	6.75871322708156	6.86944974145702	6.90572696056144	-0.150222954334333	0.546224755613619	0.858573157729455
Merged-chr6-128760178-4	chr6	128759652	128760652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	28489.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	7.31071965975954	7.62710096865507	7.30328299986941	7.00485777086326	7.56026533437283	6.88222642593268	-0.336623861754722	0.253364199842682	0.650818120355465
Merged-chr5-121713720-2	chr5	121713220	121714220	+	694.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	2111.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	4.21489653749177	4.17341866570985	4.20691370341691	4.27960372476215	4.1275599021636	4.22917234748188	0.0335353740080031	0.941954567488358	0.987092317509512
Merged-chr18-35747080-4	chr18	35746556	35747556	+	844.6124880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6502.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.1495739956347	5.09366619950775	5.6981233846262	5.42961216850845	5.75090563496606	5.85311781160393	0.683901969197027	0.0705566370576233	0.34813073151629
Merged-chr17-43554671-3	chr17	43554200	43555200	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11061.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	3.8522302961089	4.05353027783497	4.12010399234452	3.73127446699209	3.62751846313382	3.96005397450838	-0.754512604950133	0.154692067121049	0.52390421792532
Merged-chr17-47842929-3	chr17	47842426	47843426	+	763.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-8235.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	3.48865005208717	3.50924204701476	3.6677709368626	3.7698109139133	3.64344101754469	3.46437967159793	0.294617057424285	0.60390881480892	0.882880818445088
Merged-chr11-107327517-4	chr11	107326988	107327988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-138107.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	8.19299279242648	7.97653702482139	7.33613334059923	7.50622190674177	7.85583398714506	6.98218188997083	-0.551240235735619	0.101411367215999	0.424674255939937
Merged-chr17-50193890-2	chr17	50193390	50194390	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3393.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.27376434257664	2.24520503190367	2.34203626757559	2.50825610856894	2.30772181200003	2.7284385086348	1.50293362655451	0.0805634702807951	1
Merged-chr3-131271402-4	chr3	131270896	131271896	+	926.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008212, intron 1 of 7)	intron (NM_008212, intron 1 of 7)	705.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	4.61986475188498	4.76222437632481	4.91121068438738	4.4866980379716	4.36223745343481	4.39019618893094	-0.855279945867227	0.0441969839608123	0.264590448335223
Merged-chr7-98165192-2	chr7	98164692	98165692	+	921.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-2850.0	NM_001301250	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	3.15641510741829	3.16466409799834	3.40694962801269	3.31079135528748	3.22172875245842	3.25889497350226	0.0938749964245078	0.880447502779622	0.972540920690587
Merged-chr5-90364742-4	chr5	90364238	90365238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	1447.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	6.10143083048734	6.16305366657853	5.95136302058876	6.11860535559988	6.25712146919921	6.17157742882582	0.177156366501657	0.535207061708356	0.85341621121369
Merged-chr17-12319745-2	chr17	12319245	12320245	+	712.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357722)	promoter-TSS (NM_001357722)	892.0	NR_045290	224523.0	Mm.188855	NR_045290	ENSMUSG00000097350	4732491K20Rik	-	RIKEN cDNA 4732491K20 gene	ncRNA	4.07889840128699	4.11414204560838	4.25372849814072	4.25216562715936	4.22906652573711	4.32096939447054	0.331597762058145	0.471930270300733	0.820410145940699
Merged-chr15-78244806-4	chr15	78244316	78245316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	5.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	6.903518325382	6.84689361720442	7.164942006192	6.90395355467134	7.03724018823623	7.06431328093268	0.0493157007880752	0.844977139366934	0.963760118842549
Merged-chr12-75689847-2	chr12	75689347	75690347	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-20310.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	4.49281951043831	4.68054925219705	4.99549364031919	4.27879400442353	4.29603711471656	4.68503382833809	-0.751538649045373	0.102068439088545	0.426069687497354
Merged-chr6-97815974-3	chr6	97815502	97816502	+	968.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	8944.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.87080949036704	5.73721883734013	5.71335127622285	5.59861727149269	5.82759198424374	5.63954262601161	-0.142499233805328	0.651030833531844	0.902735752871093
Merged-chr10-83636290-2	chr10	83635790	83636790	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	12374.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	5.08267998772868	5.48389152663538	5.00222332450135	4.79006496570151	4.84825277113878	4.91972078885775	-0.78237137142058	0.0465033913859683	0.272900359012882
Merged-chr17-81064435-4	chr17	81063985	81064985	+	855.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028138, intron 1 of 9)	intron (NM_028138, intron 1 of 9)	600.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	6.74953063187582	7.07630830572681	6.51362432325963	6.85555835542527	6.95536673810576	6.35290816362275	-0.0794703446008757	0.799129779637167	0.952213067320379
Merged-chr12-39230956-3	chr12	39230455	39231455	+	969.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	447244.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.01789345289841	2.17894036855735	2.28231257151598	2.00897349869784	1.89237105309812	1.88707365995999	-1.93784814665562	0.0566602097291288	1
Merged-chr8-120108815-2	chr8	120108315	120109315	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5337.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	7.16450404372054	7.38108568840046	7.51014181412526	7.30396421512898	7.64057290334687	7.28026188392407	0.106525100761325	0.676327724066595	0.912517670609091
Merged-chr6-133105447-6	chr6	133104933	133105933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163445, exon 1 of 1)	exon (NM_001163445, exon 1 of 1)	194.0	NR_073368	381820.0	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	8.28363892469473	8.6585466380784	7.93764106061446	7.98575566825129	7.97917809829783	7.72534785543965	-0.604514185381159	0.0230902929610873	0.17768036366997
Merged-chr2-129299328-1	chr2	129298828	129299828	+	666.0	f0_c57.idr	TTS (NM_010554)	TTS (NM_010554)	1958.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	3.84777429661855	3.65469321246691	3.85743665367128	3.91712574971395	3.92067497674971	3.87676466539243	0.3815008440249	0.460377731820256	0.814477170345238
Merged-chr5-101765714-4	chr5	101765159	101766159	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173370, intron 1 of 12)	CpG	529.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	7.62835359882205	7.77426810172323	7.47564861836171	7.7642130768448	7.62293237766293	7.51160753727303	0.00307357918515471	0.989484907123553	0.997611022725407
Merged-chr19-42099621-4	chr19	42099128	42100128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145501, intron 1 of 8)	L2|LINE|L2	9193.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	6.10420590505349	5.91760333697077	5.86612666349705	5.55444442748125	5.20212187841799	4.94640385427119	-1.30821682189059	0.000311484190607272	0.00719144742842671
Merged-chr14-70100852-4	chr14	70100339	70101339	+	939.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	746.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	7.10447979979896	7.2728125608384	7.4393253077119	7.61894401295775	7.677635893845	7.65868275499484	0.557418100393789	0.01666075396998	0.143080608559613
Merged-chr11-8604437-2	chr11	8603937	8604937	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	60098.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.03533576910633	5.97077315688807	5.65944652486428	5.55956092563047	5.60444838755042	5.54924634535834	-0.610423247962675	0.056237937479937	0.305626432096571
Merged-chr9-123722909-4	chr9	123722408	123723408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5283.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	3.42961631868122	3.28949961913939	3.32322044210335	3.58488355634875	3.32209677106652	3.61099654409444	0.596465674722902	0.321327764412917	0.714837665357421
Merged-chr10-19010276-2	chr10	19009776	19010776	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	1687.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.32275830918645	6.14914288771088	5.98593616282483	6.70278317291736	6.77402946218316	6.64927703323722	0.879814638096389	0.00145634951583573	0.0241924397112517
Merged-chr1-85254445-1	chr1	85253945	85254945	+	666.0	f1_balb.idr	intron (NM_175219, intron 5 of 7)	intron (NM_175219, intron 5 of 7)	16121.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.26815905102923	3.22371539159282	3.11542783125598	2.64448262235758	2.61492000173458	3.24374732022986	-1.34414874898012	0.346932563959223	0.735116631005168
Merged-chr16-25041341-3	chr16	25040796	25041796	+	849.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18343.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.04192639791709	2.98952192965083	2.99511497583878	2.91608924425493	2.87473072759651	3.29059758008927	0.106184441253642	0.87825035376915	0.971842464414451
Merged-chr7-116524712-4	chr7	116524225	116525225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360375, intron 5 of 14)	intron (NM_001360375, intron 5 of 14)	20356.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.14766858823075	4.34897150596039	4.46819973511919	4.13825312727822	4.30393220964068	4.28132702530594	-0.207706723757419	0.654255380024578	0.903721536896116
Merged-chr11-106615664-2	chr11	106615164	106616164	+	901.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2734.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.53740392462192	4.0303384462413	4.26728904394746	4.42196244757608	4.08629470278361	4.42266745971913	0.0418155535488916	0.932630768561151	0.985254864630157
Merged-chr11-114851784-4	chr11	114851334	114852334	+	845.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_147217)	promoter-TSS (NM_147217)	-196.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	7.12809434495271	7.3059047025936	7.30240759408654	6.78949948701861	7.19391997991355	6.84432001347148	-0.422919990376787	0.106142803264859	0.43492048919399
Merged-chr5-103629174-2	chr5	103628674	103629674	+	822.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029415, exon 1 of 6)	exon (NM_029415, exon 1 of 6)	229.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	4.12038095052362	4.20238902744412	4.14427879383925	3.71528763832459	3.75723081063576	3.97870883377209	-1.04771360956017	0.0383301183678723	0.24240879297362
Merged-chr10-68104207-1	chr10	68103707	68104707	+	618.0	f1_balb.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	124637.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	4.41273069987333	4.43655422810909	3.99345847682579	3.74646969293179	3.71650967513451	3.90815366392949	-1.56132091279889	0.00275690650981733	0.0394898737939198
Merged-chr13-17992104-3	chr13	17991586	17992586	+	649.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	1265.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	4.82433973254686	4.62443340177624	4.66081304963247	4.65027130909074	4.83631468757462	5.01924384437093	0.29662302736907	0.466572489030197	0.817586753758551
Merged-chr5-118477866-4	chr5	118477356	118478356	+	951.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82863.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.25982961319825	4.84512156225133	4.38377156589749	4.92508402968209	4.78544004851887	4.40499406948503	-0.355207380225058	0.47122309456562	0.819888573544447
Merged-chr11-53502156-2	chr11	53501656	53502656	+	548.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-17580.0	NM_033144	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	2.45039466297674	2.50630923912779	2.65575499080562	2.37791983812039	2.37232907018603	2.48384978188923	-0.796957493699563	0.323332969966375	1
Merged-chr2-167254397-4	chr2	167253900	167254900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13863.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	7.82019116955535	7.95060616544514	7.49044976317949	7.98358606967864	8.21109173640185	7.53663454373116	0.249902265648663	0.366175074910438	0.751274672875721
Merged-chr4-20033094-4	chr4	20032591	20033591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-8961.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	4.44034092027234	4.61486139688881	4.36711889474705	4.7066863397339	4.46731872562097	4.48061698043005	0.175452159969466	0.686538346987107	0.916761528494478
Merged-chr11-70372659-4	chr11	70372166	70373166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-20635.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	5.59291551317766	5.54085829957531	5.56232053222211	5.32709304068191	5.39612141673247	5.80023381177443	-0.101801347098915	0.766819853672947	0.942573703853445
Merged-chr15-76448061-2	chr15	76447561	76448561	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175457, intron 35 of 43)	intron (NM_175457, intron 35 of 43)	-9377.0	NM_198885	20289.0	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	1.63447334005369	1.56816230863822	1.79175939537155	1.40303516692103	1.35825152778565	1.59486176075357	-2.8065927214112	0.037393251320035	1
Merged-chr6-31502897-3	chr6	31502401	31503401	+	819.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013791, intron 17 of 17)	intron (NM_013791, intron 17 of 17)	61036.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	4.36211216823455	4.46662918074349	4.8264003360179	4.34294458142061	4.32093159326296	4.39561371319762	-0.518408550551773	0.252068140583579	0.649617120850337
Merged-chr11-46799044-3	chr11	46798547	46799547	+	692.650024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11752.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.78032009954533	5.703892136384	6.08466994064048	5.9392746704525	5.91178065030334	6.42356508440173	0.427138236144453	0.199263126424809	0.587661665256806
Merged-chr4-145244948-2	chr4	145244448	145245448	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	MIRb|SINE|MIR	1922.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.40253240286591	5.63068556954683	6.12323359060677	5.88893715505788	6.18494749695687	6.56456633431525	0.854395822576565	0.0211804629053492	0.167734268338089
Merged-chr11-115691253-3	chr11	115690752	115691752	+	820.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8282.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.62678065108628	7.80335257693699	7.39036109188519	7.94373738029026	8.09524025418592	7.32957633157728	0.311770023421286	0.278136517035807	0.675475432925552
Merged-chr5-121712422-4	chr5	121711918	121712918	+	860.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	CpG	809.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	6.86617039493055	6.25765093512863	6.44977845838385	7.23536780377994	6.30416104285146	6.4526816372868	0.290123132424311	0.430517324279397	0.796302972450097
Merged-chr14-48447080-3	chr14	48446593	48447593	+	651.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132324, intron 1 of 13)	intron (NR_132324, intron 1 of 13)	741.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	6.15929727350297	6.06344335731467	6.03962070595927	6.28977032220272	6.15477918613185	5.98295626752071	0.107992340005989	0.709176754395426	0.923909555179111
Merged-chr3-61442364-6	chr3	61441850	61442850	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77843.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.46364026147747	4.44337604946268	4.5355504369006	4.01513563661904	4.31475992012653	4.52221434968102	-0.478094969339867	0.30406256557419	0.700629668419518
Merged-chr6-142758394-2	chr6	142757894	142758894	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	B4|SINE|B4	1708.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	4.44312501356997	4.50367763690448	4.39216937526908	4.24944992645816	4.32868134554871	4.18385048850923	-0.497421941957614	0.265027440498633	0.662839771217229
Merged-chr19-11293109-4	chr19	11292627	11293627	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 2 of 2)	intron (NR_045317, intron 2 of 2)	-9314.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	7.0428556373678	7.24117145281067	7.11243394574494	6.90573151643807	7.1723149175006	6.9428361939161	-0.176472431078218	0.479151138019181	0.824050429752801
Merged-chr12-40037484-4	chr12	40036999	40037999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-123.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	7.6207416386176	7.66115131649609	7.01853361344609	7.21346861479939	7.21797051618423	6.94492204792155	-0.502027376182902	0.0746085134296265	0.359510376734559
Merged-chr1-181151340-4	chr1	181150863	181151863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030131, intron 1 of 4)	intron (NM_030131, intron 1 of 4)	432.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	5.63130219624424	5.79506746400776	5.55186787108982	5.77412994748431	5.36840691661204	5.30163050121534	-0.311342815352202	0.371281331767603	0.755436533897021
Merged-chr14-73374497-4	chr14	73373997	73374997	+	873.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	10792.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	5.14344346148119	5.28765135763025	5.48444236558251	5.158125839699	5.41220619625074	5.51915223726699	0.128523308015261	0.71982420946206	0.927960661644538
Merged-chr11-74523333-2	chr11	74522833	74523833	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	CpG	66825.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.15752585365716	5.11847563348781	5.32402534267518	5.14928226579087	4.89312485536614	5.20321321632045	-0.245781294827432	0.505403468869615	0.838105343836875
Merged-chr14-47241679-2	chr14	47241160	47242160	+	777.5	f0_balb.idr|f1_balb.idr	exon (NM_172598, exon 25 of 25)	exon (NM_172598, exon 25 of 25)	35197.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	4.77292137446076	5.16091079568379	5.25472761385868	4.42804642197951	4.39865076095484	4.5968260529368	-1.40224497481574	0.000989362090687393	0.0178574492064895
Merged-chr3-127398517-3	chr3	127398016	127399016	+	947.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	10542.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.94490790192418	3.00879953426666	2.95261498085017	3.49612780836889	3.36113930937193	3.49705949585524	2.10499496699992	0.00174570254690828	0.0278322317538119
Merged-chr1-9798147-5	chr1	9797676	9798676	+	951.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	46.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	7.56528072987363	7.54677595747838	7.12431103101373	7.7055091863535	7.34635198000246	7.24613532653657	0.0226865646532205	0.932998234967129	0.985356091252617
Merged-chr12-112762267-4	chr12	112761784	112762784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	1629.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	7.1648140621429	7.23980421694816	6.85121240789985	7.26016170059217	7.22972619593812	6.86322773401825	0.0505296050103705	0.850249953238412	0.964836457860265
Merged-chr1-169370908-3	chr1	169370417	169371417	+	930.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160547.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	3.6862793352335	3.6381044493468	3.54997622685866	3.62193521704434	3.37564588327296	3.56635949365331	-0.388601691923428	0.494948788415992	0.832153667472614
Merged-chr5-135935975-2	chr5	135935473	135936473	+	640.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-1332.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	3.25373177241184	2.68289191771692	3.1350910292733	2.72871622314034	2.73380420767272	2.91743706907465	-1.22725371529177	0.111397713754795	0.445871935353881
Merged-chr11-54888238-1	chr11	54887738	54888738	+	673.333313	f0_balb.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-14616.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	3.4186592232166	3.22667903405232	3.33707945420993	2.98052073510881	2.99931616210777	3.40766096949403	-0.812247853629164	0.22578468634326	0.620701256044383
Merged-chr13-20211957-4	chr13	20211442	20212442	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	121435.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.97556859633692	4.85783776185178	4.89418687807055	5.32313005858909	5.23038636762634	5.27071783721503	0.761680093545049	0.0347116193166824	0.228413160941282
Merged-chr2-79206419-4	chr2	79205908	79206908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49018.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.76263579966916	5.69373002000716	5.56716697240905	5.06240896180014	5.36294782860801	5.19502318479632	-0.887763386334026	0.0100532187990588	0.100728704089243
Merged-chr19-56743701-4	chr19	56743192	56744192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21320.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.7414721994141	7.87300878980431	7.46992646232894	7.42351253973198	7.80248715710242	7.55762711329514	-0.148392747473378	0.554200904149103	0.862684716437283
Merged-chr2-150779930-2	chr2	150779430	150780430	+	645.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6866.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	4.47004446445966	4.53451047280352	4.85751467049057	4.68942694238137	4.29706631202729	4.78159332212668	-0.0644062577795086	0.886990640322154	0.973794308941933
Merged-chr1-191421166-4	chr1	191420664	191421664	+	871.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24123.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	3.61285736890134	3.43737246352676	3.52404672561751	3.77822370447212	3.71210973685284	4.08567145153951	1.12563142448899	0.0460890001239437	0.271482443050586
Merged-chr6-83656162-4	chr6	83655669	83656669	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016751)	promoter-TSS (NM_016751)	-53.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.83908164737108	6.80688712401656	6.84227855433699	6.70933388091562	6.67282629966157	6.50907171282823	-0.297114295015429	0.239477839279955	0.636359120505658
Merged-chr1-55026097-4	chr1	55025561	55026561	+	991.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	1417.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	6.70865873542289	7.0905290235052	6.87701964355112	6.81693282696533	6.84861812058413	7.03029893290058	-0.0115369866366535	0.965047847753754	0.991748846039908
Merged-chr19-12459650-2	chr19	12459148	12460148	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1131.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.40113575203587	5.65610381534796	6.00876586273735	6.24337009976669	6.47993504692219	6.19761840665405	1.07594075670282	0.00100551634539006	0.0180979891990518
Merged-chr14-55147709-2	chr14	55147209	55148209	+	931.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30774.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	5.93993003518285	6.0942394167783	6.31058551491155	6.03833220294472	6.28664961734614	6.3700867799928	0.206382558815802	0.491252259131731	0.830448151501811
Merged-chr14-14804973-4	chr14	14804462	14805462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15853.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	2.84829999163467	2.59817061273171	2.72796443495507	2.50329465719387	2.46239100701158	2.61426948068784	-1.19388684998753	0.129554078265832	1
Merged-chr7-132622285-2	chr7	132621785	132622785	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	11642.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	3.33993029121123	3.17272572176385	3.34008978203799	3.38583633034832	3.27969155574816	3.29837953631946	0.150907164531649	0.804693208976821	0.953651704501661
Merged-chr11-3290054-4	chr11	3289588	3290588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253691)	promoter-TSS (NM_001253691)	-369.0	NM_001253690	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	6.02977793572696	6.15195461471587	6.03030991535129	6.14844631032537	5.50416380712325	5.82798405720395	-0.391071854468567	0.240827411463004	0.637831978005973
Merged-chr2-164706217-4	chr2	164705728	164706728	+	830.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7727.0	NM_030058	78239.0	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	4.0296663193071	4.11002183619377	4.08631325141231	4.31178151051929	4.17198764365871	4.29223789242695	0.508812376183104	0.275966839122701	0.673355880502019
Merged-chr5-123884048-3	chr5	123883598	123884598	+	825.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	3.99691317015145	3.85462015483638	3.64651664393625	4.15563846404801	3.99201785137154	3.93863469745253	0.558329631537382	0.288032592409118	0.685406696290155
Merged-chr8-40423728-4	chr8	40423228	40424228	+	933.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357249)	promoter-TSS (NM_001357249)	-87.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	3.47985009196946	3.31484726409978	3.49754656544303	2.77269516288955	2.71448628250625	2.87591972507205	-3.57727788842035	2.76163474559714e-05	0.000960660969530295
Merged-chr5-21186230-4	chr5	21185726	21186726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-41.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	8.00645558496431	7.84532740015986	7.69575310425758	7.80775953777898	7.80957874671482	7.65970590319198	-0.138100928656074	0.540820033913211	0.856546234535532
Merged-chr1-80757589-4	chr1	80757092	80758092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	961.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.18720509558424	6.27574398245565	5.67559879866514	6.50564344958712	6.21893001855599	5.85452676440655	0.2411917700661	0.490571638443499	0.830091427684216
Merged-chr4-134922434-4	chr4	134921971	134922971	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1154.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	6.47409858455	6.30883978810612	6.73576670752853	6.95086915729554	7.07469002374714	7.00589987320777	0.793202203381525	0.00281672359532506	0.0400913337187492
Merged-chr11-94379689-2	chr11	94379189	94380189	+	703.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	13287.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	4.55263874133382	4.9191432853999	5.28358437681647	5.05690765371271	5.02007774530971	4.96317907520754	0.159523596218256	0.705191446075442	0.922719364779302
Merged-chr6-125191724-4	chr6	125191205	125192205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-119.0	NM_146171	68298.0	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	6.41696321574901	6.6194791658019	6.95843698157842	6.28706878666899	6.7286291275493	6.70909665242053	-0.133664285833464	0.660336238924381	0.905929432585967
Merged-chr1-36875075-4	chr1	36874597	36875597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 3 of 40)	ORR1E|LTR|ERVL-MaLR	64430.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.50889254792735	4.85844654491897	4.54954435503106	4.4505093463162	4.39703934430827	4.39888114305725	-0.592503406558869	0.173998986084496	0.553210993472106
Merged-chr6-71440188-4	chr6	71439733	71440733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024288, exon 1 of 9)	5' UTR (NM_024288, exon 1 of 9)	404.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	7.67068117301912	7.53159530824268	7.76205792629746	7.90968594383997	7.5006017954254	7.31321938141855	-0.0738258064246301	0.777506135695268	0.945152311048107
Merged-chr11-69759103-4	chr11	69758582	69759582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-449.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	8.82153562596393	8.72236867927326	8.30018288931695	8.58122151444492	8.86755074084854	8.14216055407195	-0.0916876453042031	0.739747633429161	0.934245371298156
Merged-chr14-31413397-4	chr14	31412891	31413891	+	886.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	4286.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.49179657524334	6.3858101482193	6.54660830182367	6.51951760400539	6.70868058905271	6.50046503777452	0.184221397337648	0.488313038853454	0.829104641846902
Merged-chr5-33009936-4	chr5	33009437	33010437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8879.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	5.88015378074328	5.86100379294572	5.78068163155014	5.74966495659836	5.83177764372258	6.11719347366744	0.0972009594096122	0.753570045646713	0.938563718495545
Merged-chr10-67287995-3	chr10	67287507	67288507	+	800.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	4.68990335279453	4.46565401551777	4.42769789952168	4.80729172010464	4.70095253238875	4.99942655940359	0.690799665952576	0.100672437070388	0.423239295864636
Merged-chr2-128722433-4	chr2	128721916	128722916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	23501.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.68647828320977	6.6169540067645	6.50416710540293	6.72039183434252	6.90425967077232	6.65124127876746	0.253905977561874	0.330520404110142	0.721952410959523
Merged-chr3-127769380-4	chr3	127768895	127769895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	11132.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	6.48778948194362	6.39429463677065	6.36556280099768	6.34561012876427	6.31804196422633	6.69686210059171	0.0565368897972559	0.840590424900217	0.962819298477451
Merged-chr3-133544774-2	chr3	133544274	133545274	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-384.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	8.29543070146081	7.94399765642639	8.09555176986795	8.04015600860098	7.67672329696792	8.08990854169231	-0.251194943863008	0.303640468631883	0.700141775589473
Merged-chr3-144207092-4	chr3	144206598	144207598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1843.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.61724857559549	3.52845333051762	3.86830944438419	4.01095098198588	4.26942878657544	4.30153989172481	1.66093434615388	0.00179715704690503	0.0284454714778151
Merged-chr10-41960037-4	chr10	41959527	41960527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58355.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.30206848113034	4.39527466142456	4.62910696287372	4.65393868845563	4.89830298914685	4.65569674427989	0.751454432409162	0.0794021807783236	0.372597375265213
Merged-chr3-138118570-4	chr3	138118081	138119081	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	13072.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	7.47969988132119	7.61904981801545	7.18446839551213	6.93988102053962	7.04187162864628	6.75511876766037	-0.782416163837476	0.00260349427219638	0.0378131526271455
Merged-chr2-166700984-2	chr2	166700484	166701484	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	L2a|LINE|L2	12848.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.33377319403763	4.81146277167199	4.75171190282539	5.74974442305809	5.37750468471467	5.27857168027912	0.967544102954437	0.019659116633148	0.159558698479416
Merged-chr16-57393405-3	chr16	57392913	57393913	+	809.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	40136.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.84886817011758	3.97103571346903	4.22519236169388	4.01839593160335	4.23307665524487	3.9693016308629	0.210296826907734	0.678908433273616	0.913553914280182
Merged-chr3-95296274-4	chr3	95295758	95296758	+	885.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199475)	TTS (NM_199475)	10546.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	3.51577397715531	3.57597868697874	3.58424150021876	3.530030581991	3.53626908285801	3.5473405363389	-0.0734782384579683	0.895370931405974	0.975665889379756
Merged-chr14-55764578-5	chr14	55764024	55765024	+	980.7299800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1438.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	4.9152544033189	5.25893921547314	5.30974021081521	5.23350351301802	5.43148364409178	5.18138220535033	0.258003415264526	0.486467932589593	0.827855940662378
Merged-chr10-61145828-2	chr10	61145328	61146328	+	765.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009163, intron 2 of 14)	B1_Mur1|SINE|Alu	1856.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	7.54480528049584	7.60192759424526	7.62767268900122	7.49330087962902	7.67629364988092	7.30003035715695	-0.119591965938173	0.611798949069752	0.886342611187799
Merged-chr13-100600568-4	chr13	100600049	100601049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178410, exon 4 of 6)	exon (NM_178410, exon 4 of 6)	16395.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	6.80558524898904	7.22717821801522	6.49536465339755	6.45371008672072	6.97503016217285	6.55529637676861	-0.306212484945807	0.345230959388951	0.733666487940844
Merged-chr2-129414327-3	chr2	129413823	129414823	+	955.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43184.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.05318264140675	5.90499673220535	5.92330878595287	4.96820065747606	4.95667249176147	5.14161187089179	-1.83867318061585	4.68834852282684e-08	3.66298689096127e-06
Merged-chr1-87621567-4	chr1	87621000	87622000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1188.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	7.92304994192668	7.88035695838708	7.7491526416127	7.8512235836599	8.16345827874513	7.9218371586303	0.192041885820455	0.395672456280341	0.773006356793092
Merged-chr13-34343483-2	chr13	34342983	34343983	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	1699.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.84950466184771	3.51590047488685	3.4609342503695	3.55348175197022	3.43855202132049	3.35575504518036	-0.619153321677454	0.301494512430185	0.698211950745639
Merged-chr1-155075187-6	chr1	155074697	155075697	+	987.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	8067.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	6.23515260277654	5.89231027737403	5.88484515872735	5.8990329869649	5.55069583892958	5.82186591630496	-0.463637784164943	0.153074713718763	0.521796017169638
Merged-chr14-63111829-4	chr14	63111332	63112332	+	986.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-10630.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.0868529817994	4.10676232220594	3.89279408579036	4.10888772629355	4.00680067713108	4.01442009645157	0.0131129805855206	0.978676535790139	0.995160277495735
Merged-chr11-59212504-4	chr11	59212013	59213013	+	854.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001130408, exon 5 of 5)	3' UTR (NM_001130408, exon 5 of 5)	4152.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	4.21902704093081	4.15718660523106	4.38260028504705	3.86585506208919	4.46006423027678	4.18654986931752	-0.129260911572207	0.799980703943067	0.952400567323345
Merged-chr19-10709564-4	chr19	10709080	10710080	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361959, intron 2 of 3)	intron (NM_001361959, intron 2 of 3)	8812.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	2.73802915291575	2.53009030862504	2.63750173760943	2.68004716066149	2.45634464217229	2.95011741101747	0.36600697194118	0.646486794523167	0.90100465546023
Merged-chr5-17885474-4	chr5	17884990	17885990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	3469.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	3.86151466190475	3.58845563735357	3.42440418773037	3.55353848045682	3.70953691165969	3.66694727032008	0.00418031999232297	0.994250315315962	0.998918571480046
Merged-chr11-101982038-4	chr11	101981541	101982541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	2750.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	7.83911609228607	7.68869842748806	7.61525838802891	7.91489263566776	8.09180375467774	7.89869981424743	0.363346591545448	0.102249205576229	0.426399634019287
Merged-chr8-47712795-2	chr8	47712295	47713295	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359133, intron 2 of 2)	intron (NM_001359133, intron 2 of 2)	1136.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	3.30440990141384	3.49898231209312	3.38342942074553	3.53617747552235	3.585274239596	3.72106812611267	0.777171440783596	0.181219260568519	0.563574247882485
Merged-chr13-54824291-5	chr13	54823783	54824783	+	837.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34878.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	5.21564829427509	5.12131052137272	5.57420904392873	5.21045844605222	5.27015922736448	5.16783749795856	-0.170518580475797	0.641104455311141	0.898770428668406
Merged-chr11-87736848-4	chr11	87736342	87737342	+	762.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-709.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	5.5825082051902	6.01312212634097	6.04475973144176	5.70476348557685	5.98575678528144	5.99595382007218	0.017968113928749	0.956530976418771	0.989887454023164
Merged-chr2-117341716-2	chr2	117341216	117342216	+	834.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	1161.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	6.49921868816379	6.150743339459	6.0443051898869	6.83505583834789	6.85648393991235	6.64756510532769	0.850815039819834	0.00315926002492807	0.0438345352933491
Merged-chr4-126136359-2	chr4	126135859	126136859	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 7 of 10)	(CA)n|Simple_repeat|Simple_repeat	-11644.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	3.80053237566943	3.5718729199689	3.77530335485272	3.40345551968635	3.40031035738661	3.29927815496082	-1.26779055045104	0.0322365327577704	0.218144162822909
Merged-chr14-61802066-4	chr14	61801548	61802548	+	950.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-119675.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.53977946980487	5.34992509309258	5.37966379064487	5.46356684252028	5.85244897515056	5.56288289506947	0.414396131525761	0.224946551622174	0.619841463303568
Merged-chr3-135211065-4	chr3	135210573	135211573	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-1490.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	3.19720488518664	2.97220822407841	2.97687279533364	2.95888321151773	2.99377687617985	3.33318920615977	0.195441781995977	0.776390666223376	0.944817763146101
Merged-chr10-98775810-2	chr10	98775310	98776310	+	947.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138832.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.49580858440591	7.21952091740378	7.34242150838828	7.09882090762911	7.31189544773083	7.52209250301459	-0.0594623018628283	0.813632530381326	0.955940138311315
Merged-chr14-65149297-2	chr14	65148797	65149797	+	791.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51191.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.81402465104162	4.11214223797561	4.01447248478403	3.97245414888705	4.36609964428751	4.55197526684729	0.915281880070755	0.0761174141500757	0.36314304206178
Merged-chr8-122953555-2	chr8	122953055	122954055	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	88729.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.63139078889275	3.71146036530341	3.94928609073463	3.92418056949997	3.84804219165704	4.35741701909979	0.888892852625578	0.103841988655557	0.429650782930444
Merged-chr17-70834621-4	chr17	70834111	70835111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	12166.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.3134033533329	8.2733481756394	8.14093638337509	8.2232792360622	8.34954156416361	8.26226798897572	0.0466758872688643	0.821365918571359	0.9579800868
Merged-chr5-113993281-4	chr5	113992778	113993778	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 1 of 14)	CpG	479.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	6.93395094827893	7.16973548368475	7.42487592653935	7.35303042835992	7.17083069406135	7.40069746561761	0.184367589294954	0.477243208411614	0.823211450952012
Merged-chr11-106824684-2	chr11	106824184	106825184	+	834.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025481, exon 17 of 19)	exon (NM_025481, exon 17 of 19)	35432.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	2.82402956026059	2.64256317313249	3.06320091493971	2.75313667412602	2.53134155677134	3.08010582229943	-0.228478154921077	0.773575086976242	0.944125377137732
Merged-chr2-94158151-4	chr2	94157627	94158627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019657)	promoter-TSS (NM_019657)	-218.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	7.62710981035829	8.14383238759516	7.5216450832221	7.72883556332714	7.99905535011366	7.77723139352652	0.0585121088724553	0.827858924921589	0.959554716425434
Merged-chr13-45392227-4	chr13	45391731	45392731	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2489.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	7.76479299924376	7.5613065223014	7.37256461155124	7.77428773086115	7.92406401516515	7.47394604933034	0.235989969087295	0.352520632062359	0.740194084833795
Merged-chr10-60749638-2	chr10	60749138	60750138	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	3144.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	3.39124564287961	3.20380450780906	2.98589978789752	3.27983112236371	2.86850501707336	3.24384224188259	-0.276813527657984	0.695989350366488	0.919291538728398
Merged-chr15-73595293-4	chr15	73594805	73595805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	1221.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.30266642157552	6.31685304094101	5.94059850622337	5.96433967964024	6.43212721288905	5.67167819815046	-0.210972740588757	0.548259582238654	0.859612671354863
Merged-chr1-189799714-2	chr1	189799214	189800214	+	737.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	B4|SINE|B4	71446.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	4.87360427385407	5.2178618093121	4.95941814410031	5.27052146968327	5.30020081925389	5.20093599908645	0.47273910719163	0.20092744277994	0.590247860859073
Merged-chr9-90231573-2	chr9	90231073	90232073	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	B1F2|SINE|Alu	39196.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.00468493161185	3.6834600162637	4.11346836960479	4.0472682570913	3.65594267004389	4.13681464585322	0.0442108172798753	0.936224522279889	0.986037792257163
Merged-chr14-41021004-4	chr14	41020518	41021518	+	922.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7185.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	3.23651843992409	2.90204568466655	2.87370663921491	3.38305678158015	3.31189800232041	3.48636812007218	1.57588311914973	0.0260448815662577	0.191477514169038
Merged-chr4-44016320-4	chr4	44015821	44016821	+	932.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	3671.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	5.39444652684322	5.43518371337777	5.0433984664412	4.90975847991792	4.81261310257696	4.96162001446386	-0.891445353174537	0.0176625902027446	0.148766960784489
Merged-chr2-102828664-2	chr2	102828101	102829101	+	696.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177785, exon 13 of 16)	exon (NM_001177785, exon 13 of 16)	73064.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.273990148749	3.19081368218002	3.29887981952641	3.09959217371294	3.38530744913756	3.25700286375965	0.0166664390889554	0.978925812066693	0.995160277495735
Merged-chr10-80024392-2	chr10	80023892	80024892	+	831.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347074, intron 10 of 22)	intron (NM_001347074, intron 10 of 22)	4717.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	2.66231454618739	2.77726108571937	3.0481028228536	2.82991510170122	2.48264219346297	2.64301962516941	-0.932833543992088	0.238947486844761	0.635631523582239
Merged-chr6-72348647-4	chr6	72348093	72349093	+	846.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026696, exon 3 of 4)	exon (NM_026696, exon 3 of 4)	1276.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	6.57060933467454	6.4134509123961	6.47643519078639	6.89043200361022	7.07335882249792	6.8041372040671	0.700779699970335	0.00690504651434828	0.0773263668410175
Merged-chr5-120588781-4	chr5	120588296	120589296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145853)	promoter-TSS (NM_145853)	-183.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	5.28251850452891	5.17170739283184	5.3971105003379	5.29523249288612	5.15649018028519	5.03734616101182	-0.220803504971655	0.536293743155871	0.85392789486322
Merged-chr4-141823148-4	chr4	141822630	141823630	+	814.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007919, intron 2 of 7)	MTD|LTR|ERVL-MaLR	2875.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	3.12545241832898	2.93310395340765	3.07154854088091	3.51150547249362	3.73944393069439	3.80861954082662	2.73044129657477	6.67353393272448e-05	0.00201046854262903
Merged-chr10-80105655-4	chr10	80105147	80106147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2945.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.49050064789752	3.99874969920363	4.36392374102975	4.18012444728127	3.9955356039909	4.43051506231388	-0.256447055473324	0.610948452407813	0.885849400663435
Merged-chr7-12818804-4	chr7	12818286	12819286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026046)	promoter-TSS (NM_026046)	74.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	4.43876155012968	4.17097178800924	4.34296052489492	4.42284052011421	4.13250964615629	4.53444897452619	0.112081748278266	0.811023845206563	0.955098218346624
Merged-chr8-124949551-4	chr8	124949086	124950086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053207)	promoter-TSS (NM_053207)	-332.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	5.29999957720618	5.60924908389943	5.58599247255792	5.26890844189445	5.06969292509593	5.42683568888091	-0.495955622299961	0.164540113570093	0.539123991728306
Merged-chr7-125561497-4	chr7	125560988	125561988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	9206.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	4.88147462196464	4.92111537139699	5.08920499194323	4.82806755855647	5.17375710220668	4.74952864584561	-0.0324062481345126	0.935498048279354	0.985852245513165
Merged-chr6-89595521-4	chr6	89594945	89595945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	CpG	207.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	6.13804897133692	6.18327382232116	5.41473171694855	6.09485186730093	5.94369561469091	5.3378687029723	-0.221126321969265	0.584256757477594	0.87456162664244
Merged-chr13-42984846-1	chr13	42984346	42985346	+	819.0	f1_balb.idr	intron (NM_001005740, intron 2 of 12)	MTC|LTR|ERVL-MaLR	118599.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	3.59838980319985	3.32846991893607	3.92114688225899	3.72924634094261	3.55211204501158	3.89768487124224	0.328164282355238	0.584627132307141	0.874618776844772
Merged-chr17-28468081-2	chr17	28467581	28468581	+	652.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 1 of 10)	intron (NM_010220, intron 1 of 10)	18068.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	5.08330276196959	4.70627817086771	4.81833138118714	5.11987093519431	5.52807325349177	4.52738405616603	0.53493820601894	0.25611840138763	0.653139712382384
Merged-chr12-102366251-4	chr12	102365730	102366730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73583.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.91135721454622	7.22501044427553	6.87659250286437	6.71531563698002	6.8911691022966	6.52109124486477	-0.449301013489099	0.100721027194386	0.423286414777412
Merged-chr4-149788451-2	chr4	149787951	149788951	+	555.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14184.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.28530065101408	2.29331648688595	2.48361053247118	2.46892082592984	2.37586681780244	2.55739911779168	0.721483886832749	0.379666317622138	1
Merged-chr15-64181436-4	chr15	64180932	64181932	+	907.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-120984.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.04206894012968	3.74184154254062	3.68632224447783	3.76710453406681	3.5639268296608	4.18608112105241	0.0639762761858101	0.912326109608367	0.980342621918939
Merged-chr10-119001154-4	chr10	119000656	119001656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49343.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.47617651749059	5.59134705355247	4.93536166849609	5.16147643273412	5.27559875827948	4.54670502188438	-0.661680206511972	0.148138940232476	0.513628453046031
Merged-chr2-79646471-4	chr2	79645996	79646996	+	783.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 8 of 17)	intron (NM_080558, intron 8 of 17)	11071.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	3.10471042672696	2.88209256467724	2.97180638383088	2.94068872872225	2.93336340399171	3.10219726488229	-0.000917643330042285	0.99892512444546	0.999826323540084
Merged-chr19-41385172-4	chr19	41384653	41385653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031376)	promoter-TSS (NM_031376)	-83.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.51894629927761	8.61920596541124	8.33018851590421	8.51915122435888	8.81725985900949	8.36103450405562	0.121754270139844	0.600936927587232	0.881855262262798
Merged-chr17-72943603-2	chr17	72943105	72944105	+	675.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	25300.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.72861673896007	5.05103878499344	4.99310620544323	5.16132042155674	5.1870758229559	4.91073564467104	0.363773733878206	0.34635490883259	0.734647818046397
Merged-chr5-121453205-2	chr5	121452706	121453706	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	497.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	7.541872861916	7.53977760301056	7.29476046971276	7.49852672701595	7.59505062419337	7.64097297144149	0.157017873416807	0.494729441000139	0.832098209532918
Merged-chr15-102399751-4	chr15	102399221	102400221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6595.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	7.93997044862503	7.84748686891358	7.64325638799782	7.68652632223201	7.9017054847575	8.01893561699874	0.0755269018903981	0.746187155767382	0.936287949695029
Merged-chr17-74397397-2	chr17	74396897	74397897	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 1 of 13)	B4A|SINE|B4	1789.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	2.32384881953297	2.29198113470865	2.28075090808239	2.4726051775612	2.31767804232855	2.79373258178917	1.48436052230442	0.0865637367434163	1
Merged-chr6-4902950-4	chr6	4902474	4903474	+	984.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181595)	promoter-TSS (NM_181595)	-346.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	5.78225264548496	5.59895316498113	5.55326425078154	5.72926077426629	5.36973638877472	5.40522861788982	-0.26467797275244	0.434041989423266	0.79814689082248
Merged-chr14-76150537-2	chr14	76150037	76151037	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39646.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	3.68604329934502	3.85339993074862	3.82157893533558	3.84997125059008	3.78100604976154	3.78906787406974	0.0598137098971532	0.908787015808771	0.979318923423343
Merged-chr2-118959880-4	chr2	118959380	118960380	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33383.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	3.93602046464839	3.67421888046037	3.77416241973765	5.03675632940167	4.87957128095348	4.60807703769764	2.93276295984551	1.56903390126154e-08	1.35996013391844e-06
Merged-chr6-91681788-2	chr6	91681288	91682288	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	-2279.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	4.14225742428653	4.43826957376389	4.67354489582131	4.0110204678076	4.32407044845998	4.30441709442616	-0.541957465776376	0.269350613028024	0.666452341991608
Merged-chr4-3938684-4	chr4	3938169	3939169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019969)	promoter-TSS (NM_019969)	-219.0	NR_104355	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	6.20180949716332	6.37514129720325	6.11052651930221	6.26177465638526	6.17692904798059	6.21435909357411	-0.0411500333785626	0.883869959256932	0.973466734537782
Merged-chr1-67039379-2	chr1	67038879	67039879	+	733.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	-507.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	3.78617414975407	3.57386542332103	3.68726164916342	3.80370003069639	3.77899938465461	3.47618356874426	0.0560537429576181	0.920743232700074	0.982463724790289
Merged-chr1-43507969-4	chr1	43507471	43508471	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	URR1B|DNA|hAT-Charlie	62220.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.85355011454817	5.66451102652747	5.82211796947655	6.28323951883274	6.33576909659942	6.12046760031878	0.823879346936421	0.00505425754599675	0.0616468281863526
Merged-chr15-74959391-2	chr15	74958891	74959891	+	874.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164036, exon 4 of 4)	3' UTR (NM_001164036, exon 4 of 4)	4285.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.94996561239268	5.06232842554464	5.48005609279505	5.51201896993353	5.60597941942207	5.9708953547891	1.03219664918611	0.00596840350193152	0.0695349928015567
Merged-chr19-12596307-3	chr19	12595805	12596805	+	828.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015503, exon 1 of 2)	non-coding (NR_015503, exon 1 of 2)	261.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	3.97768623557514	3.88080704987524	3.35314362812899	3.74496737943725	3.61762703643147	3.60587243275928	-0.386402303626459	0.529320449188018	0.850855728615188
Merged-chr17-26547969-3	chr17	26547460	26548460	+	748.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13552.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	4.49635710485497	4.33395752593596	4.3913418279569	4.33115358403078	4.02358304179138	4.137973149419	-0.65381078269138	0.16001123033484	0.532568578148056
Merged-chr5-64961155-8	chr5	64960651	64961651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	7.84602137832971	7.79324917625382	7.72248039988022	7.93760271352495	8.13221074412716	7.88897342644491	0.292988863136306	0.181177526890712	0.563482830885936
Merged-chr7-121074587-4	chr7	121074079	121075079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-49.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	8.13407944932985	8.5964213248068	8.07762480148513	8.15912289058794	8.42166901048287	8.1616209201003	-0.0564463677717623	0.821494074447139	0.958023303204974
Merged-chr8-3392997-4	chr8	3392516	3393516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133962)	promoter-TSS (NM_133962)	8.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	5.3949564223665	5.66420566289348	5.57667688631958	5.52538824860742	5.28861411708941	5.31286461095429	-0.329994105881872	0.332866614704744	0.723927708416112
Merged-chr11-115478781-2	chr11	115478281	115479281	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	3114.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	5.83796816678462	5.29988361513387	5.84573009923411	5.61642758412241	5.60790356104228	5.71052263293382	-0.0676742756449145	0.846547071762348	0.964033094055515
Merged-chr15-66820439-4	chr15	66819939	66820939	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	11390.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.7376983546712	4.66903959609593	4.64529425006078	4.40458961682111	4.27163572719592	4.59214589662839	-0.666299852831003	0.119062287281374	0.461302607566986
Merged-chr18-80470045-4	chr18	80469550	80470550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026295)	promoter-TSS (NM_026295)	-383.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	9.03100892122444	9.29384694853284	8.57818887360162	8.85660984254114	9.08991217021809	8.36779759838496	-0.265298204948914	0.356703856755449	0.743448231367782
Merged-chr6-136513791-1	chr6	136513291	136514291	+	652.0	f0_c57.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-5060.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	2.95980271244803	2.96686509505001	3.19608199396316	3.9871309905751	3.51097465707302	4.0502590001894	3.5796596317749	2.03191026182639e-06	0.000100998320827987
Merged-chr2-129589798-2	chr2	129589298	129590298	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3041.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.40789931609973	4.185013433885	4.70678025641983	3.86602137928331	3.85546903399856	3.93804223855263	-1.59256496237779	0.00177988417063888	0.0282203891140472
Merged-chr19-34512544-2	chr19	34512044	34513044	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	Lx5b|LINE|L1	14930.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	5.46059603381981	5.3953974508365	5.3921939872369	5.52096264353856	5.56236214109272	5.59952343166396	0.271926379462377	0.40129619504896	0.777412139196917
Merged-chr10-53881419-4	chr10	53880947	53881947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130538.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	4.85633246660085	4.72432794119715	4.90545010362415	4.63855248874986	4.80148192904193	4.86255218403252	-0.130582732310938	0.741265601717956	0.934802565252866
Merged-chr10-99268925-4	chr10	99268439	99269439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5708.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.23140631352573	6.16599584923805	6.14631027980154	6.23692074343005	6.1757999581838	6.57620529527886	0.244643777259397	0.400086757838954	0.776362382142343
Merged-chr3-69205808-4	chr3	69205318	69206318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	7.79095483388777	7.83476646594287	7.51693880632762	7.47554684535669	7.72923102729003	7.27172001370454	-0.306264596604278	0.22549293925972	0.620422475032167
Merged-chr5-130062246-2	chr5	130061746	130062746	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11080.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	3.38518551901638	3.29769634711727	3.52797295326567	3.34328465970646	3.17648084460578	3.69598852049964	0.043638106576277	0.944771209826205	0.98786315338489
Merged-chr9-45281073-4	chr9	45280562	45281562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11913.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	5.08798559488764	4.79691170893023	4.64813157034101	5.01670602762914	4.6750013515143	4.67338008686034	-0.148566467379626	0.72461891364144	0.929435720851808
Merged-chr7-120851755-4	chr7	120851252	120852252	+	983.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267711, intron 1 of 17)	intron (NM_001267711, intron 1 of 17)	563.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	5.62163356868456	5.72049098406922	5.26384317621965	5.14412684621372	4.83631356236409	5.26283884766061	-0.957170366510212	0.0108202028606676	0.106220792783203
Merged-chr9-123531079-2	chr9	123530579	123531579	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	1326.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	3.66867951923749	4.02810500981382	3.86472657547571	3.9560904384658	3.83799556642865	3.77899309293409	-0.0103921526922635	0.984400657983222	0.996597633599236
Merged-chr10-99263161-4	chr10	99262657	99263657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-74.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	7.55673018175362	7.7504013882931	7.55002214537239	7.65359946758415	7.79290469021707	7.55726916207124	0.0743961074538746	0.744922251492988	0.936032341688524
Merged-chr5-135780342-1	chr5	135779842	135780842	+	546.0	f1_balb.idr	intron (NM_008617, intron 1 of 8)	PB1|SINE|Alu	1693.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	3.61782662199198	3.276020233009	3.66060901397131	3.5909224592183	3.71040542446563	3.62659141897956	0.426479727619899	0.465912048401204	0.817266460944204
Merged-chr9-88438164-3	chr9	88437664	88438664	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	787.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	5.7721660010999	5.81531494825529	5.79302889627269	5.8363040401903	5.6359157417793	5.58492713284319	-0.183947360387929	0.554512399679826	0.862826181827127
Merged-chr1-184558365-4	chr1	184557883	184558883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040472)	promoter-TSS (NR_040472)	-692.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.34470665464124	5.17158043390438	4.82319374005402	5.05961654271631	4.57857721433658	4.85044518736546	-0.647892427172317	0.121762281722139	0.466829283395647
Merged-chr14-109289048-4	chr14	109288546	109289546	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-374807.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	2.77851439557242	2.51216700959394	2.8876340587094	2.73631177208565	2.64504148234525	2.52296538429482	-0.499773877651625	0.527229288532041	1
Merged-chr7-90036175-1	chr7	90035675	90036675	+	997.0	f1_balb.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	7016.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.87985492937965	5.248218276021	5.29159419314395	5.62914557133046	5.47014266261457	5.63940011477704	0.846268274528035	0.0182156276781401	0.152062979452967
Merged-chr17-5614697-2	chr17	5614197	5615197	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122097.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.55785958125553	4.34235471148699	4.46158080713713	4.23557616374101	4.06876566198936	4.31423555909821	-0.680794065158203	0.135824731195949	0.492611326858478
Merged-chr14-70765966-3	chr14	70765432	70766432	+	761.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023045, intron 1 of 27)	CpG	696.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	4.91671169552319	5.04162309333998	5.07847418463116	5.84805429804132	5.05336046634284	4.99666184194635	0.718591761990791	0.0946655954834315	0.410136490273995
Merged-chr9-53700638-4	chr9	53700134	53701134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5598.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.36087772956457	6.5599007960546	6.51374113377989	6.46028098556911	6.61643931402964	6.40884854227674	0.0413210642713604	0.878102868900157	0.971816559882595
Merged-chr15-100757678-4	chr15	100757180	100758180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4067.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	4.22698972663664	3.88964829966394	4.35096114186903	4.23248640692221	4.31637884584718	4.3328879820721	0.362203021079827	0.454074276094094	0.810100289331925
Merged-chr8-82914677-3	chr8	82914179	82915179	+	718.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	51323.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.4451732630786	3.3554199885834	3.66430625652392	3.20689200655636	3.20909727698361	3.13581027955166	-1.21176074728229	0.0552259971500974	0.30207424425938
Merged-chr2-117092063-4	chr2	117091559	117092559	+	942.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29012.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.84115083775673	3.85072917651677	4.30713630291225	3.90846232634557	4.12796060266306	4.20652677532932	0.228997280914189	0.661283933807078	0.906313637571144
Merged-chr7-80201223-3	chr7	80200725	80201725	+	865.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	2784.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.65622203146465	4.84257449773385	4.56804308285134	4.80907681013585	4.83925893128021	4.40670604330265	0.0256827905275042	0.952577754575437	0.989168723358455
Merged-chr15-62055326-5	chr15	62054891	62055891	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	16134.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.12243992987778	7.25545357072806	7.07464946372893	6.97396206967079	7.33623262886308	7.06676520508508	-0.0204076214274665	0.935601130478495	0.985869643214979
Merged-chr5-137858853-7	chr5	137858364	137859364	+	812.7976070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-815.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	5.82172949724236	5.56115783217507	6.05800658452351	6.11598706047026	6.16363453887383	6.05325781755375	0.521122887255326	0.0959361958258715	0.412945992565264
Merged-chr17-33996517-3	chr17	33996069	33997069	+	810.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 7 of 7)	intron (NM_001001892, intron 7 of 7)	3764.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.26651514118014	3.27361916277564	3.53058934269458	3.57463622043326	3.25884945864387	3.54876973304051	0.409090300498537	0.504646484858881	0.837806481766929
Merged-chr13-80886128-4	chr13	80885631	80886631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	36.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	9.53597218172879	9.78143866947961	9.10692159474516	9.15837979698182	9.52715092117483	8.92994148634671	-0.371287700370482	0.168065921643218	0.544395406730337
Merged-chr2-58801363-4	chr2	58800853	58801853	+	922.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46169.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.94770934475976	5.1820685467077	4.78372050035348	4.76384178304749	5.04470163540226	5.10582387911676	-0.02852535968447	0.942900299090142	0.987217876821358
Merged-chr5-135711067-4	chr5	135710573	135711573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	21928.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	7.18422573932763	7.0017284361269	7.17468227037802	7.08162857930939	7.17117016741864	6.65304518123654	-0.18222558151701	0.498447391426925	0.833865667012175
Merged-chr2-75706594-4	chr2	75706097	75707097	+	936.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1934.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.20999361376164	6.13080425666288	5.97523766081155	6.31333516903308	6.55554018603066	6.55890368136529	0.602641752746415	0.0334903062280767	0.223416675713536
Merged-chr18-76240705-2	chr18	76240210	76241210	+	722.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-991.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	4.63341212865024	4.94529607342164	4.80579327383803	4.35305827562912	4.89781730370118	4.87094747568939	-0.156541302033348	0.722866664993075	0.928972897683858
Merged-chr16-91417083-2	chr16	91416583	91417583	+	769.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	10848.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	5.72122735293465	5.72976362642314	5.97245070593951	5.39948222868792	5.64883696620112	5.4103309361594	-0.560497714717876	0.0902528434433571	0.3994977442938
Merged-chr6-38944127-2	chr6	38943627	38944627	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	ID_B1|SINE|B4	25141.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.06827492514317	3.05455263243107	3.22304824202228	3.32973969031806	3.22454747772165	3.45730397624183	0.935636127575052	0.139799027356521	0.499590729110879
Merged-chr15-101119573-3	chr15	101119076	101120076	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144790, exon 4 of 4)	exon (NM_144790, exon 4 of 4)	3821.0	NM_001355656	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	1.89712735604689	1.96888099220898	2.12959048568584	2.39032736000582	2.22496579098021	2.33995851702059	2.72771817348342	0.0090429445112903	1
Merged-chr19-10019300-2	chr19	10018775	10019775	+	810.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	1081.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.76764686160444	5.84896974281842	5.86298259353899	6.0562706199037	5.97757941402218	5.7978888449054	0.228770471965673	0.446815305468697	0.806122541261987
Merged-chr14-57357192-4	chr14	57356686	57357686	+	954.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 3 of 7)	intron (NM_030004, intron 3 of 7)	41297.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	3.25228376406674	3.28435755168542	3.1322697825092	3.03842449260625	2.94979760563989	3.02349017802892	-1.01802925589405	0.122341321263614	0.467799120431176
Merged-chr2-3322888-1	chr2	3322388	3323388	+	558.0	f0_balb.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9740.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	4.52133875713961	4.64778337637565	4.5482950683379	4.58517876562907	4.82322128711394	4.81195250519337	0.401880219511912	0.328745251850596	0.720905796252831
Merged-chr2-84645120-2	chr2	84644620	84645620	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	4360.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.26574955589778	5.52376625370572	5.54766125721742	5.83857213016284	5.81290956005282	6.06779753599827	0.840041942017092	0.0100594031843773	0.100773274761096
Merged-chr18-66475900-4	chr18	66475416	66476416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17312.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.52173545448112	7.55080875508159	7.19715490958585	7.64789559938777	7.85360720276026	7.55772252143313	0.373688671571521	0.127032434705802	0.476314670819392
Merged-chr9-35177970-3	chr9	35177466	35178466	+	840.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1979.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	6.32433391198431	6.24299698416256	6.33929771745803	5.61983659910454	5.5805338405022	5.36589353549897	-1.34777306290644	1.17822342399958e-05	0.000460703076429311
Merged-chr2-117838604-4	chr2	117838109	117839109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	16681.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	5.32367090375898	5.23924965158886	5.26348978527352	5.24248511694631	5.54176669431854	5.58995693460796	0.371323946232182	0.283548283771424	0.681376161050487
Merged-chr2-25423749-2	chr2	25423249	25424249	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	55.0	NM_001177367	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	4.08948951227452	4.25540985531953	4.32339847397834	4.29600417176898	4.13286170566433	4.01633007650943	-0.180735763916685	0.704709111251171	0.922514359670029
Merged-chr8-24423316-2	chr8	24422816	24423816	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15630.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	4.84844138122594	4.80910073084808	5.44791004797627	5.42257679951486	5.31833094402031	5.4271153650071	0.682820152076113	0.0845061112173035	0.384882771356942
Merged-chr11-77348237-4	chr11	77347726	77348726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-54.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.1490406084449	6.2010282254848	5.86813700335391	6.31128935243129	6.52629754273542	6.29723378113113	0.495121189450524	0.0908205479556696	0.401029301331742
Merged-chr4-133754968-1	chr4	133754468	133755468	+	831.0	f1_c57bl6.idr	Intergenic	Intergenic	-1357.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	5.49113279397916	4.91714172168423	5.23406870906608	4.93026455220531	4.7923826406386	5.13775247597189	-0.599489815175907	0.136406918158998	0.493460020207543
Merged-chr2-153128907-2	chr2	153128407	153129407	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 3 of 12)	intron (NM_001172117, intron 3 of 12)	20439.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	2.80895831919414	2.70317518715846	2.81224584330108	2.78701647283418	2.78677371858624	2.88489699266313	0.225204722093205	0.751431316126364	0.937886504040509
Merged-chr12-32305893-4	chr12	32305391	32306391	+	957.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-72898.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	6.18731581907115	6.68172386536597	6.73253853898793	6.57071749445953	6.81964577669655	6.80589231627648	0.293422332649353	0.319603382866721	0.713540438213725
Merged-chr19-5406906-3	chr19	5406409	5407409	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	94.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	5.09232365903163	5.15478630499589	5.43620182045564	8.10488785329746	8.54834054912688	7.9180483287973	5.06181273056623	7.81967053322113e-52	6.50659145728264e-47
Merged-chr6-17596485-2	chr6	17595985	17596985	+	554.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40525.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.52104001275003	3.30908823245347	3.19579617491588	3.29814401822778	3.28532959391767	3.44110004685087	-0.0600535558378063	0.922780565548156	0.982621045978137
Merged-chr5-130025207-2	chr5	130024707	130025707	+	942.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-826.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	4.29941680422863	4.19603620443152	4.25760642275911	4.72121696245492	4.58203836215408	4.46322081727244	0.88455942125952	0.0436850663401819	0.262716608848934
Merged-chr13-74260761-4	chr13	74260246	74261246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	31585.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	7.8092968339133	8.17957232488911	7.74147161494728	7.71627198520076	8.14117124947413	7.9229755445492	0.0169942536267851	0.946793465112685	0.988007649185823
Merged-chr18-5820440-3	chr18	5819939	5820939	+	976.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227792.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.44294345785504	4.31372566119752	4.78578459568125	5.00537081619909	5.02144078381147	4.73645514071513	0.977935961867157	0.0219337608392524	0.171710057769535
Merged-chr8-94702987-4	chr8	94702481	94703481	+	792.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6739.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	3.38496008464508	3.70267711736745	3.70438436809735	3.54787006149159	3.53240726351605	3.56638143888904	-0.196461387557491	0.732483271428216	0.931782229960786
Merged-chr8-46793589-1	chr8	46793089	46794089	+	544.0	f1_c57bl6.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	53844.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.58769746135344	6.38341510174459	6.59472935916486	6.16207854783028	6.44255008717547	6.48432061785692	-0.247289553299003	0.376783003489396	0.759388643680409
Merged-chr9-95682815-4	chr9	95682325	95683325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 5 of 8)	intron (NM_029620, intron 5 of 8)	45197.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	6.96808396067038	6.89897589242961	6.91278642639109	7.2554279105967	7.78120397544069	7.06999479433537	0.735882285166543	0.00979783149438136	0.0990472558601002
Merged-chr4-8691112-4	chr4	8690626	8691626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	CpG	720.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.39991945402819	7.30337853027418	7.2325825098762	7.33937019017421	6.84203754570333	7.32411311580571	-0.201454912327349	0.447290336791399	0.80632034195023
Merged-chr7-118129704-4	chr7	118129204	118130204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019419)	promoter-TSS (NM_019419)	-79.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	7.98147401757824	8.28084973893134	7.97067904331632	7.9364646704259	8.14989788299594	8.00414353549517	-0.0764806744134452	0.736804958340451	0.933284983163126
Merged-chr13-34178365-2	chr13	34177898	34178898	+	711.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101430)	TTS (NM_001101430)	15434.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	3.38666615002677	3.24546940211451	3.09413005269046	3.07020540053124	2.9625533208795	3.55052883240408	-0.140389631803104	0.840667328077845	0.962819298477451
Merged-chr15-85331825-4	chr15	85331330	85332330	+	750.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4551.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	3.65846382913691	3.64854611809859	4.01104396923833	3.74605985429506	3.8916455868911	3.84332787649083	0.183364726920224	0.73421865255347	0.932325247378737
Merged-chr18-36708412-4	chr18	36707824	36708824	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12399.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	5.04778612449149	5.07287903175651	5.24364433676028	4.46806321517707	4.65273005089234	4.88324993257321	-1.00048259436921	0.0126138460598917	0.11832839943083
Merged-chr7-24399663-4	chr7	24399177	24400177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	49.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	7.33059535261036	7.62404858816616	7.36449135409111	7.61788232847485	7.48573769432444	7.33148263745571	0.0538760472438945	0.823966255512561	0.958461473318254
Merged-chr11-89076422-4	chr11	89075918	89076918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033266, intron 2 of 3)	Lx9|LINE|L1	2577.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	5.88100958803071	5.81990467999868	5.62128921459335	5.51069083509691	5.5769498915958	5.8390585872418	-0.26663065119535	0.409650400751577	0.782996589845341
Merged-chr7-101559638-3	chr7	101559068	101560068	+	797.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033804, intron 1 of 3)	B3A|SINE|B2	1297.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	4.25216004320523	4.23761676793871	4.4371710324071	4.57673802723629	4.4578867697257	4.54513358957856	0.567764735299117	0.19338953340911	0.580516279397168
Merged-chr15-73612236-4	chr15	73611729	73612729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	5095.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.30971069029196	5.37284011363013	5.46440397407983	5.24122241581871	4.84698276423516	4.94139824687226	-0.740917189956664	0.0454191332119437	0.26904216105214
Merged-chr19-5945188-4	chr19	5944671	5945671	+	860.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	19035.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.67517033351584	6.49358123184378	6.56432955215324	5.46800897495284	5.45987291603814	5.70711869445867	-1.807733166164	1.13383817455537e-09	1.23974253388178e-07
Merged-chr5-96860149-3	chr5	96859650	96860650	+	724.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-61122.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	2.81930847252164	2.62448288840656	2.81367205908351	2.42452829930616	2.62809962078785	2.64253975275007	-1.03276861391047	0.192181537426361	1
Merged-chr1-184614925-4	chr1	184614408	184615408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57217.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.31609716261427	7.28271747142576	7.22980522361333	7.10407103691449	7.45951864991789	7.39887030634144	0.0796500379837036	0.742835481243794	0.935368371900894
Merged-chr5-121658438-1	chr5	121657938	121658938	+	626.0	f1_c57bl6.idr	intron (NM_028037, intron 1 of 20)	intron (NM_028037, intron 1 of 20)	2072.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	2.91970530163604	2.47626537248105	2.44260051928081	2.77936568023845	2.61837999689163	2.84660078759653	0.601309418819471	0.477743861104718	1
Merged-chr11-89000129-1	chr11	88999629	89000629	+	1000.0	f0_balb.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	726.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	8.64454958858502	8.926331100291	8.474566189304	8.72554211646194	9.11505186538821	8.54644845532208	0.171457803675524	0.499958653491306	0.834866436005229
Merged-chr19-42100486-1	chr19	42099986	42100986	+	605.666687	f1_balb.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	10051.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	4.96230238499022	4.93193237329883	4.96879703865963	4.50651196669943	4.07164573040823	4.30893140500342	-1.60240721104414	0.000278524664364588	0.00654674583967476
Merged-chr12-38844211-4	chr12	38843694	38844694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	60483.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.18930369901656	4.0860177915121	4.17640378583553	3.90906849186851	3.96896545711261	4.24364773382641	-0.318551747010851	0.514412240282541	0.843107848235413
Merged-chr19-18583084-3	chr19	18582578	18583578	+	934.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 9 of 9)	intron (NM_017375, intron 9 of 9)	48735.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.79471561709148	3.87062660472622	4.09784254722452	3.93590469629828	3.89849845366883	3.93209012035093	0.00754770438503857	0.988175839762142	0.99731652667245
Merged-chr7-140954369-4	chr7	140953863	140954863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030694)	TTS (NM_030694)	1598.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	7.82064184473852	7.66393475223906	7.67112241366997	7.84449622478781	7.97203157508889	7.89718298617197	0.26505205564461	0.221337460000215	0.61588601231039
Merged-chr17-24173069-2	chr17	24172563	24173563	+	883.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3385.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	5.84584714343332	5.23253446748951	5.74307999442808	5.48295862308935	6.07434829624567	6.05750389532645	0.482802069664798	0.203693338603474	0.593848111693788
Merged-chr12-102420021-2	chr12	102419521	102420521	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	19792.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.92013890215879	6.37133533793004	6.31294313261622	5.89913265624208	6.31165260802224	6.2567674337958	-0.0739888377606858	0.815984650934893	0.95657096937109
Merged-chr3-61294988-4	chr3	61294469	61295469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69538.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.75827830199166	4.33419814060019	4.46119817761385	4.60100576038864	4.5389467780574	4.84213607910895	0.300278443906298	0.4980352490238	0.833856267944725
Merged-chr5-23492628-2	chr5	23492120	23493120	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026984, intron 15 of 25)	RSINE1|SINE|B4	58191.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	3.29820791366436	3.35972516387001	3.40002009637029	3.45888744346624	3.50957578794758	3.68042906058802	0.741240355164458	0.204815622882057	0.595509344697286
Merged-chr12-100113258-2	chr12	100112758	100113758	+	622.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 2 of 9)	intron (NM_008947, intron 2 of 9)	927.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	2.90745822728208	2.69806119980789	3.09174816288944	2.79346875309438	3.00173399993079	3.05080413747496	0.232271178644336	0.748386025507404	0.936975942448953
Merged-chr16-20412788-4	chr16	20412283	20413283	+	947.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	13611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	5.34159228866658	5.36344915851323	5.09935305617008	5.34307470090883	5.3667115831325	5.39504744793074	0.165409681952042	0.63221155658172	0.895435008062156
Merged-chr17-43536741-4	chr17	43536236	43537236	+	863.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	6903.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	4.71187233720304	4.20556444509769	5.01484263948716	4.38465897696845	4.01062001954712	5.19283010233579	-0.0907992233397357	0.921331119959389	0.982526400261012
Merged-chr13-52626043-2	chr13	52625543	52626543	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	29161.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.63489158092833	2.47724249622288	3.01202140780687	2.84759954603229	2.62091418602043	3.29498888473364	1.07027927736239	0.2008102946469	0.590111109711357
Merged-chr6-98062038-4	chr6	98061531	98062531	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70248.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	3.51910178484011	3.30219212905864	3.24637308747872	3.38636937722629	3.43735969796508	3.54407488894759	0.336001323648217	0.577858393738145	0.87219636529828
Merged-chr9-32211584-4	chr9	32211067	32212067	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12682.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	2.9124726814279	3.08951625815873	3.1864254312454	2.92714213022926	2.69323452300869	3.03286424696759	-0.854430494630793	0.234248514500932	0.630430842226563
Merged-chr1-84426809-4	chr1	84426298	84427298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-142153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.13280514169054	4.20567578859105	4.45734067485856	4.37435265538074	3.87145694640087	4.5231079499584	0.0271632783552446	0.957938227257536	0.990000537228272
Merged-chr5-147747648-1	chr5	147747148	147748148	+	564.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-21660.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	2.63877297298281	2.62620561413112	2.84046610328644	2.73278266911673	2.42854895548527	2.47315569512855	-0.849824835790472	0.290214886419015	1
Merged-chr1-43561308-4	chr1	43560811	43561811	+	880.2625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 4 of 4)	intron (NM_010879, intron 4 of 4)	115560.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.53482278084566	3.59616923888633	3.7084591934847	3.46993586009061	3.37422273204762	3.77716380095997	-0.248069791690995	0.669579901724639	0.909692012644768
Merged-chr7-99044004-1	chr7	99043504	99044504	+	726.0	f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	L1MC4|LINE|L1	97140.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.79505576245608	6.68690552972164	6.00135100179129	6.59244280861762	6.71690444725299	6.34295158485885	0.0215368909340504	0.948049357337035	0.988042221008267
Merged-chr3-88143258-4	chr3	88142767	88143767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	895.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	8.09250924748367	8.37298601623755	8.02164269234166	8.1737611857137	8.26966158186087	8.09214101576561	0.00987569840236048	0.964921769094498	0.991702308059621
Merged-chr15-59064124-4	chr15	59063630	59064630	+	854.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	17896.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.50660133920825	3.8354393644744	3.70403344990564	3.78785933122598	3.53330059439873	3.87358540922048	0.13925501423995	0.805490572408265	0.953931960560019
Merged-chr6-137696677-4	chr6	137696175	137697175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38407.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	6.28146620786335	6.45018222157829	6.26963087373869	6.04228556125997	6.19517424821944	6.28996326973895	-0.273708123126855	0.331321180755699	0.722668404140379
Merged-chr10-17576059-4	chr10	17575560	17576560	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.14430715200539	5.53520168745459	5.5501392636026	5.28378612560738	5.21768505028113	5.71325340253295	-0.0153729790981329	0.967375318604414	0.992555129128888
Merged-chr6-5009034-2	chr6	5008531	5009531	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	105711.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.79699266040943	3.8784173439684	3.6490253869183	3.55294387005143	3.4871693641101	3.43663934129191	-1.01177914550592	0.0728932343554938	0.354737410472098
Merged-chr1-16621357-2	chr1	16620861	16621861	+	639.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-2023.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	3.18189531632688	3.34147446665713	3.45673527146532	3.18351665879798	2.95405392870997	3.36947687484771	-0.645806098272125	0.328029440819532	0.720214093401015
Merged-chr3-121693213-3	chr3	121692708	121693708	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22445.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	5.7735285035677	5.29705263348823	5.64431250882544	5.7936132546964	5.73795398868676	5.62443967158041	0.256458462359798	0.449193394431471	0.807594795348397
Merged-chr2-4452531-2	chr2	4452031	4453031	+	781.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	51555.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.59028071542135	6.97540740594782	6.47092684044035	7.35837649066524	7.48414300908302	6.73354431976697	0.815298712914196	0.0100472997857184	0.100700520425206
Merged-chr19-11048160-4	chr19	11047601	11048601	+	934.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102366, intron 2 of 2)	intron (NR_102366, intron 2 of 2)	2465.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.8966349964565	5.82097749874552	5.8384868126039	5.88574620818388	5.92087506202214	5.94806495368798	0.11384742464107	0.699524899492303	0.920619136555148
Merged-chr4-121215110-4	chr4	121214619	121215619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346660)	promoter-TSS (NM_001346660)	-35.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	7.81709813907522	7.9718344223268	7.36697682074879	7.49216341712878	7.47106961440148	7.45729711384827	-0.405692134549202	0.113754015601534	0.450554271238214
Merged-chr17-63931780-4	chr17	63931273	63932273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-6199.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	3.26085282120851	3.46034138020938	3.67656428002545	3.64247532213147	3.67053128521213	3.88981900229793	0.932516598926067	0.112159622797928	0.447369632029625
Merged-chr11-117945606-2	chr11	117945106	117946106	+	730.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	23760.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	4.06794146827517	3.63848027766802	3.99724137918229	3.89088732735019	3.86978118921548	3.97054834075725	-0.0116127590639926	0.982546636861752	0.996025201140234
Merged-chr16-57385383-3	chr16	57384910	57385910	+	632.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	32133.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	2.86495044468308	2.85051634700058	3.0796289239216	3.0455981972818	2.76814067672921	2.8549381995646	-0.180088559279581	0.799639118952016	0.952263864378888
Merged-chr12-69215178-2	chr12	69214678	69215678	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13012.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	3.53225842405149	3.28724870513932	3.77245258772097	3.8885454108902	3.54460823387481	3.93626179838462	0.875791604903193	0.143847606161735	0.506292949262113
Merged-chr6-146502244-4	chr6	146501749	146502749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010586)	promoter-TSS (NM_010586)	-26.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	6.12356005919828	6.4123006554097	6.29337582508304	5.92741825906477	6.12644054807335	5.66516272010476	-0.589553549559539	0.0604618197323444	0.318454949882033
Merged-chr11-83602165-4	chr11	83601696	83602696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	L2a|LINE|L2	-9109.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.6694415927091	6.81825258299478	6.68458879887733	6.46318153927116	6.21473685340209	5.76311389970035	-0.866902765303232	0.00551408550059803	0.0656540161011733
Merged-chr11-118220857-4	chr11	118220359	118221359	+	959.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-8117.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.36178516119048	6.25870900410789	6.18697759430334	6.48444720695767	6.38420441150709	6.11469508696474	0.11644669120962	0.682919395429791	0.91523316791368
Merged-chr4-152086811-6	chr4	152086309	152087309	+	972.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104381)	promoter-TSS (NR_104381)	-54.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	3.20516172391085	3.22912149149772	3.36397922823797	3.18727360618364	2.91973151631235	3.27166574908621	-0.585611312542538	0.373603734074407	0.757529198534216
Merged-chr11-63151933-5	chr11	63151440	63152440	+	992.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 4 of 4)	intron (NM_001302255, intron 4 of 4)	19137.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	6.19780869640473	6.26369656175954	6.1054953911995	5.83223574877445	5.81068819242197	5.91399574643137	-0.600570171018478	0.037723014713673	0.240137273590206
Merged-chr2-72235401-2	chr2	72234901	72235901	+	638.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355478, intron 21 of 26)	intron (NM_001355478, intron 21 of 26)	-50236.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.07643681325991	2.83668867933708	3.0035508816492	3.23552160155942	3.22094732893187	3.25319307420523	1.1642621851507	0.0812950590482793	0.377203996726104
Merged-chr19-10020152-1	chr19	10019652	10020652	+	567.0	f0_balb.idr	intron (NR_153790, intron 1 of 10)	ID_B1|SINE|B4	1958.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.38725220928685	5.47901184631385	5.59346411613313	5.80178420406931	5.6694177474919	5.65581358685689	0.427393296316859	0.182049450306451	0.564649559348511
Merged-chr4-3675726-1	chr4	3675226	3676226	+	540.0	f1_balb.idr	Intergenic	Intergenic	-2395.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	3.5597037381755	3.74390763681781	3.64225122948713	3.81313238126566	3.54908709663242	3.86477003676984	0.302062031456519	0.58643953196917	0.875542858146529
Merged-chr13-60696342-2	chr13	60695842	60696842	+	776.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001285917, exon 3 of 27)	exon (NM_001285917, exon 3 of 27)	90022.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.41863917388532	2.25016655595191	2.39414829952609	2.06462073499495	2.01504868343544	2.27612831188749	-1.82349497447589	0.0558175438092425	1
Merged-chr14-76150855-2	chr14	76150355	76151355	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39964.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	4.24932671358318	4.18635333403822	4.35115994496671	4.23353861722714	4.19130709937603	4.14816142951581	-0.181028812898661	0.693425698266345	0.918953933419669
Merged-chr2-152344729-2	chr2	152344229	152345229	+	689.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	-669.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	3.67438328702805	4.0824666156069	3.80931322633552	3.48765236082835	3.95985928183278	3.66673514058566	-0.449905235947031	0.443449521708327	0.803800173379074
Merged-chr3-89868595-2	chr3	89868095	89869095	+	823.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310676)	TTS (NM_001310676)	37225.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	2.83293208919925	2.82181760032261	3.02627270897697	2.87939063500161	2.87478365630391	3.04081985739279	0.185517892072704	0.789142458161429	0.949113136590636
Merged-chr5-34519101-2	chr5	34518601	34519601	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5122.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	4.39166999866824	4.80325353720824	5.00779895207483	4.74892433692118	4.84025867168772	5.00574602645975	0.259522414252101	0.548087366761715	0.859503669232264
Merged-chr6-31398968-5	chr6	31398552	31399552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	224.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	8.66573436735805	8.58882293497082	8.45290297147834	8.36348310992932	8.28841668343503	8.2772243115542	-0.368355241258191	0.0710967094278173	0.349820530901178
Merged-chr14-47299044-4	chr14	47298538	47299538	+	921.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178684, intron 1 of 3)	intron (NM_178684, intron 1 of 3)	764.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	7.3641638626072	7.55027504865072	7.09494405606197	7.48362317134819	7.39301070020985	7.15281523166284	-0.00434405576854877	0.986560793904102	0.997063455776714
Merged-chr11-100548284-4	chr11	100547790	100548790	+	917.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	2658.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	5.86782892970233	5.64385947799212	6.17939711127652	6.26324991098325	6.38587288243317	5.95188711274146	0.547953879309065	0.0927611117206563	0.405701265916025
Merged-chr14-121379284-7	chr14	121378753	121379753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-23.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	7.20614598541707	7.12230497518464	7.38052877851778	7.4337485999672	7.1057107436806	7.30821339737517	0.0759343218380409	0.758993687073663	0.940311236380535
Merged-chr2-4917914-2	chr2	4917414	4918414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1082.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	6.72821209939835	6.78223467659153	7.07854215840152	6.85606166894903	7.13702179674091	6.67707627506321	0.0786113869400515	0.777312254412682	0.945082310229414
Merged-chr12-84193145-4	chr12	84192655	84193655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	CpG	860.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.1456075642291	8.31134371420056	7.99458258424811	7.97363665907901	8.05055063073517	8.3034198594584	-0.0687709644717115	0.764594027387846	0.941979298344481
Merged-chr15-81000976-2	chr15	81000476	81001476	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	PB1D9|SINE|Alu	23211.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	3.5918169024301	3.47519651347613	3.75896974778909	3.73206364010282	3.35225210235677	3.57186140589558	-0.177904855594949	0.76140565143071	0.941257991447882
Merged-chr2-84798290-4	chr2	84797805	84798805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-523.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	5.63847519275045	5.1046925182363	5.7663642462501	5.63765839592471	5.80347868766757	5.56569009605914	0.285094594575822	0.437345575002047	0.7999265985569
Merged-chr5-24425245-4	chr5	24424743	24425743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009207)	promoter-TSS (NM_009207)	11.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	6.53365325084391	6.70231008604349	6.97254622480659	6.92103509651898	6.97262728756181	6.64335986448087	0.189280247277684	0.492827776153769	0.831208279358962
Merged-chr13-5861269-4	chr13	5860796	5861796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011803)	promoter-TSS (NM_011803)	-193.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	8.61906105528204	8.78826505776816	8.25846517673802	8.42513388802393	8.7814902103879	8.11118192956049	-0.141497205854081	0.602023848422995	0.882187830872038
Merged-chr5-112991405-4	chr5	112990899	112991899	+	994.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	24139.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.49276345427082	5.36288819525566	5.30695378744124	4.807764885231	4.8762364283639	4.80483173031737	-1.1759584985504	0.00132950115382453	0.0225030781137982
Merged-chr16-91545167-4	chr16	91544647	91545647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-1947.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	5.44367466284809	5.09493348216545	5.43355869358979	5.66474357621983	5.69113259424809	6.09660799037294	0.927404059782166	0.00877592174959538	0.0919777944072461
Merged-chr1-164603129-2	chr1	164602629	164603629	+	961.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	99822.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	3.19368490918104	3.30736280871928	3.39533848505281	3.26967843440353	3.30252502664193	3.35689248933039	0.0454123653414169	0.940487313096149	0.98684811092327
Merged-chr2-128703701-3	chr2	128703190	128704190	+	793.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	Lx8|LINE|L1	4775.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.48568956224461	5.34582575862768	5.49568203233071	5.21141223304473	5.06313237429434	5.22750524358281	-0.557485413386074	0.106632190419263	0.435916169724877
Merged-chr17-35171707-2	chr17	35171207	35172207	+	755.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 6 of 7)	intron (NM_019467, intron 6 of 7)	4345.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	6.11412338705621	6.01627012878984	6.53340336220049	6.57044299874665	6.63683457469039	6.59246536733823	0.612265621654292	0.0358219732103761	0.232574496480101
Merged-chr2-103944473-2	chr2	103943973	103944973	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-13522.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	3.92698259462896	3.58723917158125	3.62216445029344	3.61638343844795	3.61746693419044	3.63885242732631	-0.347088829615849	0.535132811316426	0.853413349144649
Merged-chr19-47919831-1	chr19	47919331	47920331	+	1000.0	f0_balb.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	-532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	7.24860526073385	7.13915234974462	7.49173796491498	7.1545170227339	6.96133584160415	7.29254668439472	-0.23838201653318	0.349527396639408	0.737574918839617
Merged-chr10-76468847-4	chr10	76468330	76469330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019434)	promoter-TSS (NM_019434)	-141.0	NM_019434	54387.0	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP|mKIAA0572	minichromosome maintenance complex component 3 associated protein	protein-coding	6.30262589295406	6.54310384582233	6.26169732559623	6.41723761462044	6.40722457886277	6.32194529611352	0.0053299603653561	0.984613129633703	0.996699342942872
Merged-chr17-80450686-4	chr17	80450206	80451206	+	856.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009231, intron 5 of 21)	intron (NM_009231, intron 5 of 21)	29747.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	3.66176377403684	4.00460078948845	3.88110574318772	4.21478392153324	4.47232915844564	4.37602074472816	1.44297911668837	0.00449282372069828	0.0568013145262019
Merged-chr1-52500571-4	chr1	52500083	52501083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008667)	promoter-TSS (NM_008667)	-135.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	7.78151760176407	6.94196525996465	7.1475483729042	7.53727424607761	6.71034446135741	6.8869266032361	-0.368101971754772	0.299356245350109	0.696127507212897
Merged-chr5-99570598-2	chr5	99570098	99571098	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	158462.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.20114723076909	3.70817040747719	3.44141423802725	3.91067011852685	3.55721644033023	3.63811503441621	-0.374806499255546	0.549554595707555	0.860377414006816
Merged-chr13-111778722-4	chr13	111778211	111779211	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	30282.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.8752184365908	3.80335028494205	3.78435506654993	4.00970409462241	3.80045546827137	4.05142652624329	0.398594321671304	0.43872743158163	0.800720144919925
Merged-chr6-15729421-1	chr6	15728921	15729921	+	955.6666869999999	f0_balb.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8760.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	6.66493076675569	6.88066086884038	6.41330107099637	6.27856658351757	6.24399595286927	6.27359175276765	-0.669228528896588	0.0175364975901715	0.14792630913417
Merged-chr10-8837855-4	chr10	8837343	8838343	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	48227.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.77814305488531	5.85303737240578	5.89257550660021	5.60398578691909	5.65591702121981	5.44027238965597	-0.476186761644657	0.130400882654095	0.482568746844423
Merged-chr7-25279441-4	chr7	25278953	25279953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-2726.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	7.88937464520485	7.76852696862791	7.5014848331878	7.74972265644426	7.57633655698484	7.39610816197336	-0.216954829675701	0.376678005940181	0.759336465825071
Merged-chr9-116174829-1	chr9	116174329	116175329	+	1000.0	f0_balb.idr	intron (NM_009371, intron 1 of 7)	CpG	534.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	8.9945291908039	9.45421842062719	8.93184942067596	8.74836646436805	9.00613408025895	8.95421550096302	-0.33441094099101	0.160244678883025	0.532961837097239
Merged-chr2-62460543-4	chr2	62460056	62461056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	23097.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	3.73508652036975	3.66653736493509	4.06190312595583	3.81983040816117	3.58524913731977	3.64480526221414	-0.452288989262979	0.416223735951012	0.787116923204814
Merged-chr13-35074264-2	chr13	35073764	35074764	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-80120.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	3.94453983310142	4.284305866362	4.05041821489016	3.95945825180433	4.03729051781036	4.42337048500511	0.11861228518459	0.816811005723769	0.956754861188725
Merged-chr2-126073465-3	chr2	126072968	126073968	+	751.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	38810.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	5.08581480736478	5.23809860974209	5.00774591233831	4.81817663595762	4.82397303789657	4.85065483988576	-0.631089497384333	0.0932038892576209	0.40657919757719
Merged-chr6-113978463-4	chr6	113977978	113978978	+	990.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-43797.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	3.27064366250889	3.46442901141756	3.46464901776648	3.28584602826873	3.15307717895707	3.31668667737262	-0.611856484123866	0.319521382184516	0.713488854059233
Merged-chr19-60819330-3	chr19	60818825	60819825	+	948.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7770.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	6.74384555767011	6.73389062199211	6.67179915074294	6.83121375992857	7.18252972094211	7.13894809913688	0.527881412344811	0.0400993409157456	0.249277994689381
Merged-chr3-60469490-4	chr3	60469000	60470000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3330.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.70035596253404	5.80774582525761	5.8973223731545	5.68742196506181	6.05145833933129	5.70589229533689	0.0705715119213306	0.826192064554237	0.959118663254492
Merged-chr6-87531722-4	chr6	87531238	87532238	+	885.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	1521.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.4369547644358	7.26946814316992	7.26620142539817	7.77047273043144	7.78638758261998	7.50064237653569	0.539647476448063	0.0213703332082358	0.168724042659729
Merged-chr9-70776098-2	chr9	70775598	70776598	+	855.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 14 of 15)	intron (NM_007399, intron 14 of 15)	97116.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	3.99374981909233	4.22707164106082	4.05631303073606	3.79526242866836	3.76343774199935	3.71605838064067	-1.05063534455449	0.0417039327907966	0.255364575655322
Merged-chr12-82170054-4	chr12	82169512	82170512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-4.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	6.36257183273033	6.25094998880382	6.19449719801209	6.29721673190348	6.16280062038425	6.05539933465571	-0.159734054945566	0.571110962429207	0.869376721278598
Merged-chr14-106669513-4	chr14	106669013	106670013	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182993.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	5.26744044982591	5.3328375287575	5.31003631213434	5.36146962875169	5.18234242030108	5.21282116368208	-0.100620806507904	0.770393365805572	0.943392092118189
Merged-chr8-110902446-4	chr8	110901947	110902947	+	998.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172283)	promoter-TSS (NM_172283)	41.0	NM_172283	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	3.74372289428215	3.67917759456426	3.83589778535537	4.00919399551533	3.9975725110366	4.05091344849573	0.842737511547057	0.0971243488130482	0.415523822100679
Merged-chr7-101903310-2	chr7	101902810	101903810	+	668.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	475.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	3.36746870013433	3.14429771927661	3.25624285178973	3.29763301618326	3.53898304614154	3.43991693747178	0.687327818937169	0.265530195993921	0.663271488345057
Merged-chr3-95017127-2	chr3	95016627	95017627	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1670.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	4.18931692685205	4.26732461341915	4.39744101391301	4.35581113094652	4.26086354578618	3.93981594468538	-0.207611099848865	0.667298648154242	0.90868987162245
Merged-chr12-110738596-3	chr12	110738111	110739111	+	878.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	CpG	679.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	6.78648638868112	6.9743198076251	6.57102872363381	6.91046270097215	6.82227861253663	6.22273427979812	-0.149962608503564	0.629002548490516	0.893979743014755
Merged-chr13-117033409-2	chr13	117032909	117033909	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-7893.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.44141390832461	5.15796853371406	5.56565081339237	5.37272454944163	5.11549932530471	5.37559295314566	-0.208277772285392	0.564931493346618	0.866552670637515
Merged-chr6-55167194-4	chr6	55166647	55167647	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7843.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	3.27591623800316	3.23870331057136	3.26761652376812	3.06144357397972	2.97076110206966	3.04773763171788	-1.05018152173126	0.105952833216732	0.434496778609035
Merged-chr5-143066688-4	chr5	143066215	143067215	+	829.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	46305.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.08157614227775	4.14200773938772	4.45409105512061	4.04928479300126	4.25820877806781	4.55760644011011	0.189929892837176	0.699971757428021	0.920780791926092
Merged-chr5-117495012-4	chr5	117494498	117495498	+	856.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80996.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	6.18450134551767	6.22696919591815	6.50107413476069	6.25231503670817	6.46261399299122	6.13498198358439	-0.00245283896857097	0.993309139694576	0.998651348330892
Merged-chr3-36495643-4	chr3	36495152	36496152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11157.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	5.57491642470029	5.18802820252452	4.92840509487975	5.33539980543074	5.18741639344979	4.6933271529973	-0.320502335139399	0.459339315642553	0.813587333985813
Merged-chr3-126630266-4	chr3	126629788	126630788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33337.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.53503163058432	7.47114840989739	6.96206936263786	7.33872045475137	7.59442929750737	7.26129533215516	0.0803635347279038	0.769103731689161	0.942999238767139
Merged-chr2-165405397-6	chr2	165404895	165405895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_054055)	TTS (NM_054055)	-5001.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	6.78392363703075	6.52261472248899	6.65374601219447	6.510449147724	6.36726521107615	6.69670048376577	-0.217015718380725	0.426882013430539	0.793904265858508
Merged-chr4-62469587-2	chr4	62469087	62470087	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023597, intron 1 of 10)	intron (NM_023597, intron 1 of 10)	1312.0	NM_001355523	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	2.45208529668927	2.38156119698044	2.19872456171783	2.40875220985389	2.39121482173421	2.5403696708805	0.589235403297506	0.491747653856585	1
Merged-chr7-80382590-1	chr7	80382090	80383090	+	627.0	f1_balb.idr	exon (NM_010194, exon 9 of 19)	exon (NM_010194, exon 9 of 19)	5356.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	2.67609583925748	2.77786398355232	2.93742237983424	2.4829138057059	2.42743894720645	2.71736518222891	-1.48256545986167	0.065745562378965	0.334570164175214
Merged-chr2-167063145-4	chr2	167062633	167063633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033196)	promoter-TSS (NM_001033196)	-118.0	NM_001033196	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	7.38931023170973	6.47350044474054	6.78282932672209	7.26664328883282	6.64562599424221	6.97339308484798	0.0593618222012649	0.864071250659713	0.968269312109804
Merged-chr3-31087954-5	chr3	31087558	31088558	+	908.400024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7000.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	2.90275918593975	2.91702644494111	3.00584241726319	3.08166798591014	2.88551663378696	2.95870651875519	0.172731362749205	0.799430824880143	0.952248176414355
Merged-chr10-121394934-1	chr10	121394434	121395434	+	593.0	f1_balb.idr	intron (NM_029364, intron 13 of 13)	intron (NM_029364, intron 13 of 13)	29844.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	2.33134091094917	2.1259298742714	2.33473280353601	2.11401831457126	1.88146126721737	2.21526124718706	-1.4633879777582	0.147038446828003	1
Merged-chr12-85457270-2	chr12	85456770	85457770	+	749.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16620.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	2.76367404602467	2.42119914264727	2.86300383621838	2.82065569736298	2.66305777189582	3.15945614129168	1.00017959696351	0.22438428852846	0.619153519154732
Merged-chr4-148086730-2	chr4	148086230	148087230	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301281, intron 1 of 4)	ID_B1|SINE|B4	1334.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	5.00392112701994	5.25892738356787	5.41167875671039	5.46569146773254	5.58780553131142	5.73950221273014	0.722958482758431	0.0397120350800413	0.247795951626553
Merged-chr9-95548870-2	chr9	95548370	95549370	+	665.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10947.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	3.45717519945859	3.71666888105013	3.39428062178047	3.7399820987295	3.64873403284274	4.16322272737982	1.08133106364948	0.0722985124985492	0.353157446871531
Merged-chr16-18406506-3	chr16	18406016	18407016	+	877.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007744)	TTS (NM_007744)	6978.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	3.89058780880222	3.98742370390171	4.15986587532898	4.16384576323584	4.04607845168458	4.18260830068638	0.344163178906226	0.479244684392283	0.824143175689519
Merged-chr6-113649600-4	chr6	113649094	113650094	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11127.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.95744482462074	5.90082168359705	6.24056285037197	6.07601966891521	6.03252633211555	6.14038411656233	0.0863055168388214	0.771250335510871	0.943589735529798
Merged-chr8-104369781-1	chr8	104369281	104370281	+	546.0	f0_balb.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	26026.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	4.82048189027036	5.08399732231348	5.08491718793507	4.65295105420315	4.5873387987143	4.72084605356928	-0.795382678383286	0.0455022356027595	0.26930436162134
Merged-chr15-57891129-2	chr15	57890629	57891629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	1289.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	6.54972936657771	6.66631796771814	6.46941589399764	6.86697680286684	7.03942815456701	6.52927734540354	0.427893443143128	0.124841125094506	0.472697361595567
Merged-chr17-17601122-4	chr17	17600609	17601609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	B1F|SINE|Alu	23380.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.66499010845144	6.977342947827	6.61583839501225	6.97418433494222	7.02945918014382	6.96816710424912	0.340290915891741	0.191267301730608	0.577843643976488
Merged-chr11-94073908-2	chr11	94073408	94074408	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025430, intron 5 of 25)	RSINE1|SINE|B4	29703.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	7.45028996487286	7.36723359376991	6.94567668212455	8.04990602451602	8.53535110411231	6.87218072874377	1.03755389970015	0.129360410859483	0.481107632717825
Merged-chr16-64850943-4	chr16	64850450	64851450	+	822.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	773.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	5.85636332267669	5.54952060470455	5.30241579876115	5.69135495968279	5.70750138174199	5.6719832486072	0.163347475166457	0.633367409544408	0.896027569728552
Merged-chr18-56709012-4	chr18	56708513	56709513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010721, intron 1 of 10)	CpG	1200.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	6.4889449680572	6.83057458149628	6.68987770265192	7.01279892190565	7.18916493115263	6.85805589423809	0.550990334715461	0.0392123036304293	0.245654070206352
Merged-chr3-152262897-4	chr3	152262389	152263389	+	942.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	2906.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	4.22601598131085	4.15248814290098	3.60728377244933	3.80233883344038	3.54927813839042	3.95341197377397	-0.793110338341217	0.17389897466386	0.553140727918843
Merged-chr2-132579028-2	chr2	132578528	132579528	+	571.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	-780.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	4.96701034507931	4.90950762669768	5.02729589578858	4.80518786437776	4.87768119367298	5.0909239377992	-0.0944051030550287	0.804064883759249	0.953557286986578
Merged-chr5-29289903-4	chr5	29289414	29290414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88476.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	5.03322569607238	5.37570574978455	5.16683491956404	5.09303846492626	4.95445359716117	4.83027292813924	-0.49438806499892	0.193146093676164	0.580302074097341
Merged-chr9-44322392-3	chr9	44321893	44322893	+	693.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2111.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	2.88930453471244	3.12852629569194	3.06367978805814	3.13757820068722	2.93801414612143	3.01680744602814	0.00291155399216061	0.99656947346968	0.999103012741004
Merged-chr13-55754444-3	chr13	55753944	55754944	+	965.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028281, intron 2 of 3)	intron (NM_028281, intron 2 of 3)	27076.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	3.1688682373803	2.95008795342871	3.09870940076859	2.8583424963476	2.94299551015092	2.99483413233452	-0.667279048198932	0.32792927274289	0.72010817392564
Merged-chr13-56181703-4	chr13	56181200	56182200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2815.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	6.59301836064467	6.57742873903121	6.6455129581281	6.49163733908461	6.49862944622716	6.60630694014369	-0.118693087999737	0.644268661336082	0.900160672024687
Merged-chr2-153214277-2	chr2	153213777	153214777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11164.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	7.17491356710668	7.2808537047729	6.96243044463574	6.53387995125572	6.7972827925239	6.66967120480226	-0.733053172169568	0.00477755115436534	0.0593240525969902
Merged-chr19-21377066-4	chr19	21376560	21377560	+	970.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95601.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	3.56130371243083	3.6210570827961	4.2513359958965	3.42016690947514	3.09444163159764	3.50884722853528	-1.77161114578945	0.00778623765012238	0.0844469841490332
Merged-chr13-23436419-4	chr13	23435946	23436946	+	824.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5429.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	3.7674952381868	3.40722596726832	3.7421615097339	3.74073941634283	3.56532066747923	3.90813447103677	0.309443999941183	0.589778321328876	0.876999741964957
Merged-chr7-74684162-4	chr7	74683663	74684663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-129383.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	5.45925633609452	5.87052246242888	5.88795072363923	6.13172207245991	6.28517289384953	5.99686054937377	0.701368039126457	0.0287041486978341	0.203135245729856
Merged-chr9-65557185-4	chr9	65556682	65557682	+	768.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 5 of 5)	intron (NM_153119, intron 5 of 5)	22905.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.12092660207137	3.8475080180985	4.54014720332666	4.1927022606323	4.02603804102538	4.24656763427153	-0.100937024306471	0.847000006277956	0.964146440701198
Merged-chr18-38455783-1	chr18	38455283	38456283	+	608.0	f0_balb.idr	intron (NM_001355749, intron 5 of 7)	intron (NM_001355749, intron 5 of 7)	36876.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.43660837406426	3.89670790717294	3.42515164030576	3.32868288491007	3.76143733731006	3.49812119066031	-0.220255792748319	0.729598640513883	0.930635866770147
Merged-chr12-91711840-4	chr12	91711342	91712342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	74594.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.4033388765194	7.51256117337105	7.40690114519101	7.20750827523801	7.52857993969405	7.32154212326246	-0.11478381193442	0.629503290632088	0.894294272027365
Merged-chr5-64221200-2	chr5	64220700	64221700	+	932.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	RLTR11B|LTR|ERVK	-9157.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.52871670270623	4.27692265900195	4.65080601378106	4.52942172583981	4.74867749276585	4.63842255885713	0.390561868682612	0.367572861749511	0.752491147261737
Merged-chr6-142746948-4	chr6	142746458	142747458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9728.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	7.84806783815749	8.10947529865521	7.72288584176132	7.80617875022702	8.18483006893546	7.8231216810089	0.0679442777202486	0.784471621101562	0.94762294289129
Merged-chr7-102022656-2	chr7	102022026	102023026	+	908.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-4371.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	5.40455463889798	5.17991097803157	5.82175584958979	5.45755041612463	5.59923330922222	5.61265267544885	0.144558015950035	0.690672435279557	0.917915728386653
Merged-chr15-103305304-4	chr15	103304804	103305804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5134.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	7.59168149129005	7.40968042536201	7.56520391812296	7.64484718079659	7.54586751118982	7.51419067752571	0.0696361752321454	0.756701725095846	0.939678097738881
Merged-chr16-17531016-4	chr16	17530467	17531467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026909)	promoter-TSS (NM_026909)	85.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	8.3544952773009	8.48612741583094	8.25779474404665	8.25975519997989	7.97278757282279	7.88882502808576	-0.448453934976862	0.0484078272614908	0.279049754733476
Merged-chr1-107584115-6	chr1	107583641	107584641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5865.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	5.85069864183447	5.69718625550904	5.86993720582201	5.85455811160389	5.82331283981534	5.99981472495795	0.150824577915409	0.619181864838551	0.889687002184222
Merged-chr8-82401748-2	chr8	82401248	82402248	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	838.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.58796239955381	6.8018934769374	6.69896451420276	7.62769192259661	7.69039514179483	7.14114609648677	1.23263601320226	4.87912763401171e-06	0.000217102915599383
Merged-chr18-88952904-4	chr18	88952411	88953411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-18879.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	4.72254123377607	5.10606947599641	4.79390796582349	4.33915877892174	4.26205758028494	4.45273231431038	-1.32725501170076	0.00220662002493637	0.0332807493568625
Merged-chr13-105301767-2	chr13	105301267	105302267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-7282.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.0420059702134	3.7833158108148	4.20659052554329	3.84796884139621	3.5799881552303	3.91340224444016	-0.734236246859134	0.177203009882638	0.558173381523113
Merged-chr3-146645696-1	chr3	146645196	146646196	+	601.0	f0_balb.idr	TTS (NM_029144)	TTS (NM_029144)	3764.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	2.95384907273126	2.81810635997339	2.74731595501372	2.73901453225781	2.62454416919046	2.88249286513041	-0.510957468905368	0.488133189561018	0.828960679980268
Merged-chr6-15754016-4	chr6	15753511	15754511	+	936.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	33350.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.36882098564646	5.45690509533324	5.09405923959451	5.3911962549492	5.45850012803119	5.48463115916024	0.226697354969298	0.513819852183782	0.842790558861955
Merged-chr4-48045949-4	chr4	48045452	48046452	+	841.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	647.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	4.88985499413242	4.55424992079874	4.55672029159537	4.99648126914352	4.51081110928697	4.93576986157121	0.327275225044557	0.456816645649537	0.811884306275507
Merged-chr5-105062618-4	chr5	105062117	105063117	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9056.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	5.1372965257224	5.04596124715788	5.16692259068877	5.19651585856689	5.43348811853172	5.16403078254883	0.339878690547093	0.342897034421241	0.731790413709574
Merged-chr8-71702211-10	chr8	71701664	71702664	+	864.156677	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028189)	promoter-TSS (NM_028189)	-364.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	3.16955558347196	3.00653092081749	3.04282902362778	3.19218087715275	2.81257112290289	2.79755969895311	-0.58127510865894	0.420604087361175	0.789800880993226
Merged-chr18-60713705-2	chr18	60713205	60714205	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	13861.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.91632042614793	3.8969564914706	4.68327491364017	3.95965579237837	4.05727824377262	4.21996498888982	-0.361463723559485	0.517240730451857	0.844527100635531
Merged-chr13-5774045-4	chr13	5773563	5774563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84029.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.53264907470701	4.61427971022237	4.51125290849623	4.34605865385303	4.11254498005922	4.31824342616605	-0.781562641106671	0.078296849665928	0.369473388929991
Merged-chr7-144908877-2	chr7	144908393	144909393	+	657.56665	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6207.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	2.38356971156859	2.27772375280845	2.55384891267176	2.27067917448311	2.17440805118778	2.44282762682721	-0.727199709081653	0.398522323015059	1
Merged-chr4-145216140-2	chr4	145215640	145216640	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-21135.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.06620390109072	4.96330434766632	5.45449781879085	5.39956845533223	5.37673519832456	5.40331067981945	0.460914752153786	0.20705324749115	0.597920729067479
Merged-chr9-65552446-4	chr9	65551979	65552979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153119)	TTS (NM_153119)	27608.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.49559764968139	7.15989091825142	7.13736170698981	7.03022848457637	7.14878842538921	6.65775670336984	-0.459503980039394	0.096178569986105	0.413433199948537
Merged-chr5-107763841-4	chr5	107763338	107764338	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-38033.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	3.68927459002497	3.83656472918689	3.55035895819999	4.01185893675954	3.78470510856051	3.94326866313741	0.666173094357282	0.219615327585435	0.613872352113978
Merged-chr16-87655205-4	chr16	87654697	87655697	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43757.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.26989189222476	5.77629734080823	5.85818913940742	5.3206374354434	5.02776841008335	5.22923046656545	-1.50772990141856	2.11119959078296e-05	0.000763445004562661
Merged-chr17-84285203-3	chr17	84284704	84285704	+	672.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-97257.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.49847609270594	5.49209137395078	5.33611582165725	5.50542278965191	5.37714578986492	5.08883470284777	-0.203618191216755	0.562092462955703	0.86560636450104
Merged-chr2-167382532-3	chr2	167382007	167383007	+	645.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-33329.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.04677049233146	3.98384256154835	3.90527932124432	3.84885914227439	3.62500444364723	3.65658317677821	-0.864810507377353	0.101152579705471	0.424164886969352
Merged-chr1-131464258-2	chr1	131463758	131464758	+	784.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	63103.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.8188998188367	5.50292297874251	5.78771702286526	5.73033854022775	5.59217432752761	5.64149530894471	-0.0959892496670075	0.76666630581079	0.942536715432526
Merged-chr8-71396702-4	chr8	71396198	71397198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-157.0	NM_026636	68251.0	Mm.21749	NM_026636	ENSMUSG00000031820	Babam1	5430437P03Rik|Merit40	BRISC and BRCA1 A complex member 1	protein-coding	5.68928611548988	6.16753948608636	5.90207697109883	5.92297115529545	5.81480208367463	5.7064560186167	-0.208722700530857	0.519910239179578	0.846082496556008
Merged-chr18-12130313-4	chr18	12129825	12130825	+	559.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	1475.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	5.35476734226011	5.28586761167791	5.45884362885814	5.62503697121302	5.91481790133323	5.71550510195191	0.757703361242542	0.0209151169875968	0.166297664051978
Merged-chr7-74679207-3	chr7	74678710	74679710	+	749.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124430.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.42382163029416	3.82322598382087	3.5323903631319	3.80574915598403	4.08389220292964	4.02151144787082	1.17729531468261	0.0396572619629598	0.247565567815587
Merged-chr5-138341904-4	chr5	138341404	138342404	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61395.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	4.73781914919835	4.80824350303431	5.20248472505334	5.23379009993333	4.98001124456312	5.20389968670735	0.470515495369532	0.23325335252644	0.629682827928185
Merged-chr15-53206080-3	chr15	53205591	53206591	+	958.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	140092.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.77425710409317	4.76063660998834	4.61226091914494	4.31273845938965	4.4486265918388	4.46828853497896	-0.76428772014944	0.0702495602929115	0.347189985560543
Merged-chr18-35745435-4	chr18	35744952	35745952	+	751.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11D|LTR|ERVK	-4898.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	5.53762277124497	5.54053376343414	5.70398141962944	5.78496116143581	5.84882966022138	5.54450543313389	0.282672129518369	0.37929107170739	0.761731306589798
Merged-chr11-17180908-4	chr11	17180405	17181405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	21607.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	4.46693045376207	4.42926186026379	4.61485236481371	4.16787304145765	4.07862469176793	4.56610619386422	-0.592612326216299	0.206187772647345	0.596809057329073
Merged-chr5-67304005-4	chr5	67303504	67304504	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2951.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	5.165896254409	5.21221531698058	5.18364033614016	5.43711828960724	5.40558364547239	5.28103858135081	0.386185977818108	0.259240925263177	0.656825376873982
Merged-chr5-21141437-4	chr5	21140947	21141947	+	967.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34832.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.4361551779084	3.19646511371042	3.35893648510041	3.19359547128706	3.225928693351	3.14135286839457	-0.588366589786767	0.350025002653892	0.738142292136378
Merged-chr17-47511955-2	chr17	47511455	47512455	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	B1_Mur1|SINE|Alu	6904.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.27609306767569	5.13897901540777	5.01271038764915	4.76806828267687	4.90683127505806	4.77275767017422	-0.711989776798252	0.0616425261227706	0.322110496375932
Merged-chr2-153296499-2	chr2	153295999	153296999	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	5083.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	3.08685157300599	2.94692768438565	3.04399983917106	3.00951174064206	3.0935019480356	3.28505655625411	0.459265530986817	0.488045285040886	0.828879239225934
Merged-chr2-127379015-1	chr2	127378515	127379515	+	643.0	f1_balb.idr	Intergenic	MIRc|SINE|MIR	15729.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	4.0371192408779	3.58526346092835	3.91020290678804	4.16063012198564	4.387319164797	4.30978594048391	1.26011652392669	0.0160022364024299	0.138918539481293
Merged-chr11-96977332-3	chr11	96976871	96977871	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	CpG	317.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	8.28410493682365	8.09455003719002	8.13608144072427	8.45599301440245	8.22995625641754	8.13680470451439	0.152190302349674	0.489356041276249	0.829631978046334
Merged-chr4-40202407-3	chr4	40201905	40202905	+	930.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	37420.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	3.31842299566629	3.32487261202156	3.87622505812709	3.31498534960653	3.33396227327472	3.76409035791327	-0.159007450270564	0.80704807608607	0.954421557180913
Merged-chr2-128123307-6	chr2	128122734	128123734	+	737.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028765, exon 18 of 18)	3' UTR (NM_028765, exon 18 of 18)	-2804.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.42574140094234	3.25646985587808	3.53148310082572	3.16674937921354	3.18922996096297	3.49886688020911	-0.46845468555924	0.455543309788932	0.811007054664672
Merged-chr8-71404351-2	chr8	71403872	71404872	+	796.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_026636, exon 9 of 9)	exon (NM_026636, exon 9 of 9)	-1640.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	4.46993451589055	4.44579807633006	4.83542084327594	4.78321210443516	4.7271797152268	4.82858211857921	0.460807146620352	0.271126134507245	0.668361183862025
Merged-chr7-116382975-2	chr7	116382475	116383475	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 8 of 32)	B1F|SINE|Alu	-48785.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	3.31117270375135	3.13284423482302	3.61351973725247	3.3285789245835	3.28930623532994	3.63365562537277	0.228570155204906	0.720659016585851	0.928320221690591
Merged-chr3-37038031-6	chr3	37037555	37038555	+	888.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172679, intron 74 of 85)	intron (NM_172679, intron 74 of 85)	-25601.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	4.61310262969553	4.74430474905084	4.78995735186659	4.58580521596331	4.52078435631884	4.40512300788704	-0.492300602387423	0.237852623059923	0.634375314429454
Merged-chr2-70971222-4	chr2	70970720	70971720	+	870.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	47154.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	6.2872367631751	6.25920059804077	6.3423915383139	6.36051381275399	6.53445931729143	6.49385397139394	0.283162799608251	0.291567250827043	0.689166486004505
Merged-chr11-103359293-4	chr11	103358810	103359810	+	928.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_183288)	TTS (NM_183288)	4382.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.82414209898784	6.64877077784547	6.58408646578506	6.55324572553013	7.03793824805178	6.57289689685878	0.0960484014137565	0.738838728113338	0.934106252288505
Merged-chr2-153779649-2	chr2	153779149	153780149	+	880.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1230.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	3.30628986339236	3.51831861066189	3.5182613486071	3.81309383181868	3.82813913549735	3.64521195620612	1.12701469638545	0.0479323157266033	0.27754712087538
Merged-chr10-128525287-4	chr10	128524819	128525819	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011843, intron 1 of 30)	CpG	540.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	6.65925045121314	6.81767180476029	6.72076758198379	6.51627630845813	6.51115972214189	6.39897062530685	-0.406601946128337	0.116208843493198	0.455137876890266
Merged-chr7-125555668-4	chr7	125555168	125556168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	3386.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	7.15427072735729	7.15367078076279	6.92457758470221	7.10020163913648	7.19538626015601	7.06588758087159	0.0547333995105739	0.821102265388175	0.957942312428027
Merged-chr11-63052208-2	chr11	63051708	63052708	+	768.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9451.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	5.99356995398499	5.76451385411946	5.97355706213141	6.3174119530916	6.52617272193531	6.17044369389704	0.75620311912384	0.0109018918922932	0.106758222969746
Merged-chr13-75822643-3	chr13	75822149	75823149	+	774.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17236.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.99013725249203	2.91026505651006	3.06793556713568	3.01836079244882	2.85536362039345	3.3564238178116	0.437277959559271	0.531795289763333	0.851806084365663
Merged-chr12-84675178-4	chr12	84674732	84675732	+	910.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23575.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	6.64472189406245	6.87523256874971	6.82246089770078	7.35800184550902	7.53247412881663	6.92645129463869	0.794529969447896	0.00401856725531379	0.0520842581384828
Merged-chr13-46733987-2	chr13	46733487	46734487	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ala-GCG|tRNA|tRNA	-6138.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	5.4463349430741	5.74210207425759	5.73514463510829	5.00176538615967	5.22734958709937	5.42442077768334	-0.821708255732791	0.021082321840292	0.16717981851587
Merged-chr12-84803234-3	chr12	84802736	84803736	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013589, intron 16 of 34)	MTC|LTR|ERVL-MaLR	29966.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	5.599073394458	5.20244805072741	5.1181677122583	5.44077599720419	5.2934349126176	5.07378974818406	-0.097125533615604	0.797561620538931	0.951799370596145
Merged-chr8-105966101-4	chr8	105965603	105966603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253804)	promoter-TSS (NM_001253804)	12.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	6.05722139124476	5.77462214649051	5.72131900109171	5.39706693212564	5.28595196787146	5.62342274315703	-0.80785668722505	0.015781295133873	0.137644654664498
Merged-chr2-132269415-4	chr2	132268927	132269927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	6279.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	6.04105963554817	5.94796553918792	5.89893540709709	5.92701532185364	6.00829844372418	5.63984443887516	-0.151043277217563	0.624884125625214	0.89225655223638
Merged-chr5-143039011-4	chr5	143038503	143039503	+	847.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	74017.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	4.78099002473958	4.54327287403509	4.80444345529354	4.71172850055694	4.28215036772829	5.00508965660996	-0.0545055436053496	0.905877421307723	0.978560592879648
Merged-chr12-84617464-4	chr12	84616975	84617975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-9.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	6.95491155385494	7.12544880707207	7.25361979010031	6.86732356824971	7.04838325587007	6.66670961620365	-0.352379601485586	0.180667447284097	0.56265140611016
Merged-chr10-121370972-3	chr10	121370468	121371468	+	872.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 1 of 13)	B3|SINE|B2	5878.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.60690069381994	3.82197024028097	4.02167242029127	3.71664370061408	3.7107632864172	3.99918230999473	-0.0385933926739719	0.943845575563613	0.987495247303971
Merged-chr12-16868902-3	chr12	16868416	16869416	+	739.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26062.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.91632010481024	5.02100459117691	5.281404268761	4.49129264729452	4.47998759298094	4.71540721836299	-1.18140509474964	0.00395825174421723	0.0515105115941238
Merged-chr12-3910779-2	chr12	3910279	3911279	+	939.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	19035.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.43220717775552	3.23460819627717	3.46448872051061	3.49020817214554	3.24874321300015	3.48148524871501	0.110942595156704	0.854965218337844	0.966038421653227
Merged-chr4-62322863-4	chr4	62322359	62323359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 17 of 27)	ORR1E|LTR|ERVL-MaLR	31312.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	5.07180533932373	5.0204825279819	5.28534848102501	4.73444730873397	4.8637186159699	4.85042662638641	-0.661138904598704	0.0834271897370895	0.382279288707734
Merged-chr6-134558923-4	chr6	134558388	134559388	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	8025.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.26491530100022	4.34410679652322	4.42359574617287	5.18692542457854	5.38945870491803	5.49958913058921	2.33231459225632	1.16739523286439e-08	1.0400066652696e-06
Merged-chr17-70996176-3	chr17	70995667	70996667	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001357820, exon 3 of 4)	exon (NM_001357820, exon 3 of 4)	1845.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	4.72479934849218	4.31219358951396	4.46724184928235	3.90559319352534	3.91440929323781	3.97981518593871	-1.63819105672018	0.000869262908026986	0.0161594343277724
Merged-chr8-22881212-1	chr8	22880712	22881712	+	695.0	f0_balb.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	21673.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	3.38965861908243	3.43716796550377	3.51121962996043	3.3786076230338	3.26332435972156	3.73048924244765	0.0680538255560873	0.910984564347969	0.980014266793567
Merged-chr2-130629360-3	chr2	130628844	130629844	+	769.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080562, intron 1 of 5)	intron (NM_080562, intron 1 of 5)	683.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	6.74237205002663	6.82358132373458	6.5723672073866	6.53261111029449	6.77058140574079	6.09375754945965	-0.331223727606146	0.277544081295489	0.674707488501667
Merged-chr11-107319248-2	chr11	107318748	107319748	+	891.599976	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-129867.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.73940309245286	7.83816441257776	7.43727858389652	7.65618843635424	7.99371400323642	7.56769129483307	0.102368525626127	0.688167217281521	0.917193226920892
Merged-chr13-102144013-4	chr13	102143520	102144520	+	925.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-375803.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.23383472795438	3.18062316632611	3.01152635381804	3.28804608191575	3.49455744674606	3.44154355280262	1.05742008448692	0.099690965086879	0.421076063914581
Merged-chr11-93887215-4	chr11	93886715	93887715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346525, intron 2 of 17)	intron (NM_001346525, intron 2 of 17)	996.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	6.84787720215082	6.38026678162536	6.23164092646932	7.11058765873507	7.32452025389068	6.42371081751936	0.767957591134712	0.0278168710501244	0.199087064023633
Merged-chr4-59569766-4	chr4	59569271	59570271	+	936.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11792.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	3.63294214263712	3.34709011418542	3.59590735308919	3.36524680112529	3.435014317665	3.21429119132371	-0.684816509349292	0.265752191975443	0.663507318087217
Merged-chr7-102248311-2	chr7	102247811	102248811	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1807.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	6.37717711293706	6.03398594821026	6.54083509547932	6.56749291318567	6.63536586668857	6.91122451329533	0.615361986488566	0.0376471560272171	0.239857929457326
Merged-chr6-29624005-3	chr6	29623500	29624500	+	905.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14151.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	3.26067952656132	3.03699602736209	3.42927241535904	3.11553209436255	2.98096617797974	3.12169011359203	-0.771620025078071	0.247045781687902	0.644071481472832
Merged-chr6-146410398-4	chr6	146409882	146410882	+	948.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 9 of 56)	intron (NM_019923, intron 9 of 56)	91841.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.74585164377619	5.09639620442935	5.25560387044898	5.33944976395059	5.28452594905236	5.01745956905693	0.386855215660164	0.321492132953782	0.714882390432811
Merged-chr9-70841567-1	chr9	70841067	70842067	+	566.0	f0_balb.idr	intron (NM_001324473, intron 1 of 8)	L1ME3|LINE|L1	93241.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.75885312158788	6.61996210199924	6.69798835150506	6.73294707237942	6.89717463010835	6.74088792299263	0.164158812364375	0.517066755149201	0.844470647767425
Merged-chr4-24617043-4	chr4	24616547	24617547	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033531, exon 10 of 10)	3' UTR (NM_001033531, exon 10 of 10)	120596.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	4.13057553844194	4.27721395811419	4.06661684187282	3.84842925602848	3.81271674687133	3.88659260353857	-0.962720927585711	0.0532595684359776	0.295875428656752
Merged-chr18-69421536-3	chr18	69421066	69422066	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	75406.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.12271988876263	2.97769548610278	3.22436923062827	3.01213160269005	2.7673359950201	3.40003839379405	-0.12137937203821	0.867286402152848	0.96931826298411
Merged-chr12-80793042-4	chr12	80792538	80793538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	2506.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	7.06583239354981	7.18785023368874	6.80245009215138	7.33892163102379	7.59930228135796	6.84525341734516	0.411772064407915	0.165533145184914	0.540657129048606
Merged-chr7-122196868-3	chr7	122196346	122197346	+	760.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10615.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	2.85217352268241	3.00790987990422	3.21947982153003	3.09885860344121	3.0730782373556	3.23566910440744	0.470104881261682	0.485992848016335	0.827641640456729
Merged-chr14-50955740-3	chr14	50955216	50956216	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	-425.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	3.19937841157266	3.15916644826962	3.46009173631986	4.75328411323447	5.02024304846595	4.46201246951782	8.11898175065079	6.49828662764815e-11	8.98188428095261e-09
Merged-chr10-44529534-4	chr10	44529031	44530031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-70783.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.60695617301503	6.64527292873081	6.57056091859875	6.43168063056837	6.89356239621331	6.61265371775149	0.0952793078219987	0.731057733653561	0.931307266655708
Merged-chr2-90573586-3	chr2	90573075	90574075	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	7072.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.03870829752164	7.0158935423432	6.76134604666536	7.03583027074397	7.25654333181114	7.331158709166	0.392089203605285	0.121817934396954	0.466849055144701
Merged-chr10-7680227-6	chr10	7679681	7680681	+	766.069458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033219, exon 1 of 1)	non-coding (NR_033219, exon 1 of 1)	954.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	5.69485214390532	5.50847352278686	5.77880351620448	5.50522995555032	5.60815287263727	5.5792879298422	-0.172180037336246	0.593697032650835	0.878589727861081
Merged-chr13-60680595-2	chr13	60680095	60681095	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	78384.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	6.18824769000036	5.95562535116448	5.84435975443813	6.2067308702252	6.10727032166352	6.05240155063159	0.193535432829493	0.51610422005574	0.844051513295388
Merged-chr2-167641589-4	chr2	167641094	167642094	+	725.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9589.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	2.69612075098939	2.71663950860074	2.76317568939981	2.7841911845216	2.51493203708087	2.9543404654444	0.174225740501451	0.819526652214398	0.957283576025177
Merged-chr3-88149613-1	chr3	88149113	88150113	+	597.0	f0_balb.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	7241.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	5.25834412091702	5.77948361860835	5.56653356258243	5.70320927862701	5.81091403686969	5.81330513249724	0.406165693772379	0.234083701331659	0.63036877369004
Merged-chr7-142385483-1	chr7	142384983	142385983	+	561.0	f0_balb.idr	exon (NM_009983, exon 2 of 9)	exon (NM_009983, exon 2 of 9)	2387.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.04371425898096	4.95785795491246	5.12633687576834	5.79396544479788	5.75780100708628	5.15658447559323	1.13223639217908	0.00262007400985908	0.0380075171220981
Merged-chr2-69778866-3	chr2	69778369	69779369	+	663.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	10617.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	3.98931744515305	4.05411854714975	3.93583035800001	3.95773373985144	3.88232313928352	3.90436585145079	-0.252915531414801	0.610562710348072	0.885668247317778
Merged-chr9-90114708-4	chr9	90114217	90115217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357780, exon 1 of 13)	5' UTR (NM_001357780, exon 1 of 13)	103.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	8.3991762798754	8.65623311640645	8.4344092489245	8.47391169308014	8.48368340594433	8.36831482571938	-0.0823396837482864	0.694706523778174	0.919217788511748
Merged-chr11-116811410-2	chr11	116810891	116811891	+	796.25	f0_balb.idr|f0_c57.idr	intron (NM_001347633, intron 3 of 4)	(CAGAG)n|Simple_repeat|Simple_repeat	16655.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	4.13031685984278	3.96797690834168	3.93722799654401	3.41467422576418	3.32411722189685	3.75836951415934	-1.79592782479124	0.0021243244550674	0.0323283446454234
Merged-chr3-8981859-4	chr3	8981366	8982366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17720.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.77705633942557	7.80408721327758	7.59722031845314	7.81739858684689	8.17102046888454	7.55341747169529	0.215485468128598	0.403866967482696	0.77907073817134
Merged-chr17-71250162-5	chr17	71249645	71250645	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164885)	TTS (NM_001164885)	45491.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.62582994134809	6.71103383925632	6.3744969384015	5.79717182996955	5.67295294282483	5.72082386020499	-1.45528742439481	6.25434717301189e-07	3.58163606037146e-05
Merged-chr18-5296193-3	chr18	5295688	5296688	+	828.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360447, intron 1 of 4)	intron (NM_001360447, intron 1 of 4)	38251.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	2.62492059682751	2.82686498850158	2.87862215824898	2.86507580592921	2.57789869260473	2.64070441608645	-0.417460287913466	0.583938105152156	0.874346724973469
Merged-chr5-118095681-4	chr5	118095217	118096217	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172721, exon 6 of 11)	exon (NM_172721, exon 6 of 11)	59741.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	3.71058976399291	3.55292028552436	3.63419431524986	3.40421968905221	3.34020415737913	3.25801207922304	-1.12956258747221	0.0574999617022719	0.309513314356491
Merged-chr10-67061724-2	chr10	67061224	67062224	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	L1MB5|LINE|L1	35264.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	5.36065544602435	5.27364665976843	5.4263969565081	5.28849874310824	5.29260622592153	5.34004052839874	-0.0893285114447292	0.791893206935964	0.949839887482488
Merged-chr1-171389016-4	chr1	171388579	171389579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027893)	TTS (NM_027893)	119.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	8.72697853528094	8.7700048572155	8.35598859018731	8.5770465050022	8.85443174699613	8.52149789148145	0.0381594454358696	0.870441648119397	0.970065609722504
Merged-chr7-45716999-2	chr7	45716499	45717499	+	995.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_203280, exon 2 of 7)	5' UTR (NM_203280, exon 2 of 7)	1003.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	7.26822304290154	7.43490582263136	7.46435880224834	7.6923492506729	8.10567662801236	7.80705197241804	0.719885112179779	0.00294072318137435	0.0414901746673091
Merged-chr16-8738968-4	chr16	8738480	8739480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003918)	promoter-TSS (NM_001003918)	-638.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	7.06063395772915	6.23695793925149	6.80217888429982	7.11256576238008	5.89276848296895	6.40894604041728	-0.260728400506011	0.687647673690304	0.917193226920892
Merged-chr2-75829144-4	chr2	75828643	75829643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3034.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.25960104602648	5.36847420347783	5.75052368775815	5.51287762375565	5.31042368316455	5.85479737801421	0.196373532769413	0.599381249354883	0.880985224772602
Merged-chr8-104243746-2	chr8	104243246	104244246	+	662.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 2 of 8)	ID4|SINE|ID	4812.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	3.06593386058018	2.84014683866987	2.86554274161933	2.94247375591605	2.78772668183415	3.11630013703378	0.0928182727508457	0.895963224634313	0.97569173539301
Merged-chr11-58965274-4	chr11	58964816	58965816	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031172, exon 2 of 7)	exon (NM_031172, exon 2 of 7)	1535.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	4.26504654951679	4.04997671994114	4.39337057538134	4.52261139431478	4.12041128111804	4.37559913252317	0.290183303640319	0.544825639497379	0.857895653540487
Merged-chr6-124279610-3	chr6	124279103	124280103	+	970.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25048.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	6.67179811262579	6.67331719205477	6.69645221833434	6.31560636795718	6.80266543771226	6.78559515214516	-0.0382799341266615	0.891557385526794	0.974819081679788
Merged-chr16-33408540-3	chr16	33408039	33409039	+	856.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358569, intron 1 of 8)	MTD|LTR|ERVL-MaLR	8094.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	4.81577553759771	4.77143705498029	4.77146654874441	5.02498239764652	5.18595888034753	5.12480654755783	0.721963948428058	0.0538459849548019	0.297603235876397
Merged-chr4-59455192-4	chr4	59454696	59455696	+	930.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16563.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.21374786352773	6.28209505123338	6.24531717045262	5.53345835854028	5.51351515749534	5.60032739327204	-1.2459932726908	2.80026088714621e-05	0.000972877277234495
Merged-chr17-56472992-4	chr17	56472495	56473495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	3485.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	4.21856712753434	4.15288225156838	3.94146828125427	4.61507461802068	3.87406670586799	3.84675283035017	0.157268263464118	0.781641066056798	0.946262489478465
Merged-chr4-126429605-4	chr4	126429125	126430125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-83.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	8.44589350874892	8.57725768956045	8.38756191074043	8.48294504152111	8.68936671665318	8.42560873913603	0.0929096816339412	0.661011030077151	0.906246109292722
Merged-chr17-63499902-5	chr17	63499305	63500305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	775.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	7.47808995615752	7.30267067370965	7.2881580457401	7.43898246647194	6.81672073202653	7.10276790112728	-0.324743263712646	0.237005868555187	0.633436684891915
Merged-chr8-105609444-2	chr8	105608944	105609944	+	595.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081241, intron 1 of 21)	L2|LINE|L2	4215.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	4.58728450372998	4.82259780602914	4.77474156139941	4.61156989929543	4.68442980662712	4.72592070671883	-0.135432273778902	0.738415817998679	0.934032187674406
Merged-chr3-58576700-4	chr3	58576294	58577294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001040396, exon 1 of 6)	exon (NM_001040396, exon 1 of 6)	158.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	7.95236291178828	8.10080940645762	8.06277806176591	7.98189962596462	7.93614136824409	7.9965488204875	-0.0985613002751165	0.637699240410042	0.89735407749672
Merged-chr19-46004097-2	chr19	46003597	46004597	+	620.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_176785, exon 1 of 1)	exon (NM_176785, exon 1 of 1)	619.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	5.9304310508949	6.06964864319869	6.04100137033465	6.06662571285336	6.03666305269078	6.26723750640348	0.18083621066174	0.533927939248811	0.852777001391163
Merged-chr1-39482397-4	chr1	39481938	39482938	+	918.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3683.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	4.3949660980668	4.44548335299511	4.76214477484339	4.46862779996393	4.41825123003042	4.56350335710016	-0.132365874650248	0.762205643165027	0.941504218349746
Merged-chr7-3708248-1	chr7	3707748	3708748	+	1000.0	f1_balb.idr	Intergenic	Intergenic	4207.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	5.09374709925147	5.26780153834716	5.69877907768703	5.40877740060593	5.36483075066738	6.13668823997234	0.580778226375254	0.162406705904067	0.535842287006085
Merged-chr16-36657850-3	chr16	36657368	36658368	+	920.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8209.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.13173331037922	4.6040542957013	4.91401848167075	4.70690219794931	4.78611800627172	5.08046045350486	-0.0934300487270095	0.825161984246707	0.95873878915311
Merged-chr4-101654778-4	chr4	101654218	101655218	+	862.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	6935.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	6.34661946177361	6.49600408410836	6.77122375725343	6.30179441814323	6.50622426797694	6.66654435142088	-0.0736972350881409	0.798423399055419	0.951930937621884
Merged-chr17-27837321-2	chr17	27836821	27837821	+	680.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	3.27767003664574	3.25850609212925	3.52550357046559	3.39243197080063	3.67170193287257	3.69678824386015	0.901372544956776	0.133273313489746	0.48836948380917
Merged-chr2-14232769-2	chr2	14232269	14233269	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	3355.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	6.95633859787145	7.25369967831845	6.63486778976039	6.91075485159876	7.60303686662568	6.9962610068403	0.357902829314016	0.26489342920482	0.662755283317035
Merged-chr5-139399142-2	chr5	139398642	139399642	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7245.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	4.04563203369895	4.27743530538302	4.58268894476047	4.10246048188091	4.27321720725054	4.41528174494345	-0.11845704547574	0.808400146122469	0.954683711776353
Merged-chr1-58712686-4	chr1	58712213	58713213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-573.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	8.13281728863857	8.22381761577506	7.8430544441614	7.97546051415371	8.49268903354924	7.7853713660918	0.0703253340360587	0.798767918853981	0.952063885260145
Merged-chr7-98357852-2	chr7	98357341	98358341	+	985.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3447.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.58036927473182	6.95114908637047	6.79492856895673	6.90528260122112	6.85332522925786	6.67922814311952	0.0547740873906628	0.836984913815624	0.962035641067236
Merged-chr1-74505924-4	chr1	74505423	74506423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	-102.0	NM_001310662	319651.0	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	6.980093597341	7.26261426367123	6.71493044038194	6.94168176872535	7.05491455269377	7.01402994132875	-0.0179384936719966	0.946873213612077	0.988007649185823
Merged-chr15-84896400-3	chr15	84895908	84896908	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44C|LTR|ERVK	-27020.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	2.90599562332905	2.73539314442968	3.10783593394618	2.89853550254367	2.87559740040595	2.7636149418277	-0.341549887520699	0.637203103543969	0.897338937840938
Merged-chr18-62225230-4	chr18	62224733	62225733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45133.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.77953733173663	5.67757530819453	5.75248857327736	5.33953681555335	5.90410040456033	5.78896381517957	-0.0553673656316251	0.871240306133411	0.970222087171093
Merged-chr7-73534253-1	chr7	73533753	73534753	+	542.0	f1_balb.idr	intron (NM_001081345, intron 2 of 38)	B3|SINE|B2	7493.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	6.73800589160492	6.84821219128796	6.90669000304114	6.63980184070896	6.80471110588221	6.80700966561453	-0.119280797954846	0.636074717695131	0.896937789960285
Merged-chr19-56731700-4	chr19	56731217	56732217	+	790.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9345.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.70097217055731	4.41767491428119	4.57683994261866	4.84183813241577	5.02988736003254	4.64465295471822	0.673077722115073	0.109630129242729	0.442476901146147
Merged-chr5-62821011-4	chr5	62820507	62821507	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7184.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.9657048582998	4.9062695227078	4.84894289348134	4.74368539862099	4.7530368582113	5.08650604698704	-0.11497372420404	0.770150092144347	0.943363004079888
Merged-chr5-134185491-2	chr5	134184991	134185991	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	intron (NM_001359852, intron 1 of 14)	1453.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	3.44530652908432	3.27329814855207	3.30763954927546	3.50449720077238	3.18066094905972	3.74557373048802	0.541910102655726	0.394177753802669	0.772080283854252
Merged-chr15-27940308-2	chr15	27939808	27940808	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	85540.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.91444649366777	4.45239944274727	4.83361341090473	4.62046277577358	4.36256486257287	4.5508679811321	-0.564453799896945	0.201002692427905	0.590427226022563
Merged-chr6-17640952-4	chr6	17640461	17641461	+	860.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	3951.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.70204977176724	5.53352272231398	5.67245501394974	6.19161157957654	6.56792967703258	5.92195255921935	1.10443977555578	0.000801172292037654	0.0151923300081744
Merged-chr10-81404924-4	chr10	81404329	81405329	+	979.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008688, exon 8 of 10)	exon (NM_008688, exon 8 of 10)	-4746.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.20212729023612	4.81182939222698	5.2972083697344	5.17198424472226	4.84879451548986	5.5245832506526	0.175967497303828	0.674503523238813	0.911852710156386
Merged-chr17-27910896-4	chr17	27910439	27911439	+	941.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	B4A|SINE|B4	1633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	8.27176796314555	8.21162820541944	8.05465481725469	8.26479724203924	8.76864709274621	8.37951936426689	0.433132496986318	0.0707362572828283	0.348748148129974
Merged-chr17-71301019-4	chr17	71300510	71301510	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10001.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.1656225627992	7.11451055726315	7.25641683383113	7.1502264439889	7.36112436136784	7.02651572267624	0.0293136241692444	0.904869187201525	0.978165789675139
Merged-chr10-80595746-2	chr10	80595246	80596246	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-5405.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	4.45475068490202	4.56273083719187	5.12904590418206	4.74299621819021	4.7120937335346	5.43723086578041	0.570018424412024	0.23976690469417	0.636751711516597
Merged-chr18-11669240-2	chr18	11668740	11669740	+	913.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 2 of 18)	intron (NM_001081223, intron 2 of 18)	11891.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.64573752930739	4.51420318163043	4.53288466682086	5.12026422010212	5.25981713010268	5.03714460218863	1.30218148484864	0.000877993933089821	0.0162889897847353
Merged-chr12-21288020-2	chr12	21287506	21288506	+	614.400024	f0_balb.idr|f1_balb.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1709.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	5.4051488952436	5.39128553306075	5.43399417335525	5.40989316599562	5.61371532199615	5.46742685121743	0.187625426018168	0.570199036243121	0.869072933274727
Merged-chr15-8512045-4	chr15	8511544	8512544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67581.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	3.69646306696044	3.9262453653697	3.88364364482464	3.75614457475142	3.67060053639416	3.95215201724502	-0.155725988376321	0.77004703696235	0.943310056383255
Merged-chr2-27418693-4	chr2	27418187	27419187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	8921.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	7.15974767869421	7.14526270323376	7.25666569139893	7.03206196381506	7.0807024227406	6.84155742535761	-0.285060234646366	0.23873343539398	0.635449458992732
Merged-chr16-57606813-4	chr16	57606314	57607314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	53.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	6.41253567373844	6.73000210143762	6.48317345723928	6.61552614261401	6.87505028555301	6.38966790864482	0.161063728941648	0.578747267991359	0.872437129840066
Merged-chr11-85164223-2	chr11	85163723	85164723	+	707.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD3|LINE|L1	-6873.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	5.45505733826921	5.2413732931353	5.1838550364798	5.27366838287783	5.3778999170636	5.52236010769276	0.168700003209555	0.629021818117543	0.893984559676007
Merged-chr6-35177488-4	chr6	35177004	35178004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027513)	promoter-TSS (NM_027513)	-112.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	7.71130510172604	7.96355701617497	7.45305655080616	7.81700084890426	7.65745681445395	7.34016862353594	-0.155621366701256	0.557093746309928	0.864051902083144
Merged-chr17-64330645-2	chr17	64330145	64331145	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025309, intron 1 of 9)	intron (NM_001025309, intron 1 of 9)	1238.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	2.67787648204746	2.60660112205672	2.95298089059666	2.7551754960476	2.82826191900252	2.7267587806334	0.131409478995517	0.860193678865786	0.967441103100897
Merged-chr4-102656731-4	chr4	102656223	102657223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66880.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.52771107103823	6.4768540553985	6.90847836566972	6.27872538122505	6.32089237205257	6.04701996766452	-0.671322665236803	0.0230053304524162	0.177259703332221
Merged-chr4-41571556-2	chr4	41570993	41571993	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	1699.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	2.0650649074771	2.11494951349808	2.09075189235749	2.41720994980138	2.11146079025476	2.3692409254022	1.53774759818836	0.0940401969386172	1
Merged-chr6-99205809-2	chr6	99205309	99206309	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	60706.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.21273069080601	6.00585827847951	6.03580798161888	6.45787751946782	6.34428010365242	6.1857998291345	0.418219346872205	0.144218731018996	0.506955860361989
Merged-chr5-123059945-2	chr5	123059445	123060445	+	827.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-12929.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	3.63825590607442	2.97834528927544	3.38200317007959	3.20191232670293	2.86445288897157	3.22916853860278	-1.0521602640183	0.147398757358365	0.51229087349212
Merged-chr11-95822661-2	chr11	95822161	95823161	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1839.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	2.45645774964244	2.47838752832081	2.56891404249092	2.39837412400154	2.28368919143969	2.45392787833783	-0.788692320739334	0.333300519210607	1
Merged-chr9-21431199-3	chr9	21430702	21431702	+	901.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	6294.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	3.2213716698688	3.22906560471147	3.31962003035257	3.3436552266505	3.18888491194621	3.7915022745802	0.779436394289247	0.2273377083354	0.622411030375494
Merged-chr9-37257065-1	chr9	37256565	37257565	+	558.0	f1_c57bl6.idr	Intergenic	Intergenic	-1327.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	3.06435338617139	3.12762655600881	3.08621395339551	3.09386795163526	3.13152374415103	3.27213827335486	0.307046642154008	0.632318128701257	0.895495231864625
Merged-chr16-32914217-4	chr16	32913682	32914682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310674)	promoter-TSS (NM_001310674)	82.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	8.01053854441156	7.95871521518594	7.72362885827332	7.90504829951117	7.73537877454198	7.51816253133545	-0.249769508363464	0.293319963130944	0.690221391260893
Merged-chr9-99158316-4	chr9	99157812	99158812	+	905.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18101.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.42999357697992	4.38251579919557	4.35531327878825	4.62295808807912	4.58471037166068	4.59498446928885	0.521630937071364	0.216588117727031	0.610083415701787
Merged-chr15-80798026-4	chr15	80797523	80798523	+	784.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-587.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	6.25240539406961	6.53630281570458	6.23147226091559	6.6271501948776	6.90282161581805	5.87193055060884	0.321915742442103	0.370533755931745	0.754838358760403
Merged-chr11-110431676-3	chr11	110431176	110432176	+	926.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	MIRb|SINE|MIR	32574.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.2423254570045	5.37406615925795	4.8120403224921	5.41870266091812	5.45847400892568	5.58975513173264	0.603729440811522	0.109863007518569	0.443094427298972
Merged-chr8-107478143-4	chr8	107477630	107478630	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 4 of 23)	intron (NM_025830, intron 4 of 23)	41732.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	4.17299576743925	4.28196052527696	3.8418976379296	4.08030149053013	4.06070066707836	3.80177375889909	-0.369749100990314	0.480074292276864	0.824485257133086
Merged-chr11-58978062-5	chr11	58977510	58978510	+	904.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-83.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	7.00518230863482	7.36788845447715	7.45156759157431	7.38148564519663	7.63389862272436	7.25747598802794	0.231003439260394	0.380578350498256	0.762624904906886
Merged-chr11-119477794-1	chr11	119477294	119478294	+	625.0	f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	13441.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	2.22570401622852	2.19174423088796	2.40694103629496	2.12708411735826	2.05248506007912	2.48086498522841	-0.311384165546153	0.732907405004143	1
Merged-chr3-95294541-2	chr3	95294041	95295041	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	11606.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	6.30497822209794	6.30405595658671	6.10782754636883	5.90355676350554	6.1573968802513	5.65631362878784	-0.524907531754809	0.0951810158939871	0.411148363215922
Merged-chr14-19986219-4	chr14	19985724	19986724	+	893.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8975.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.24316987340355	7.45804908272206	7.15265324205479	7.09149400098797	7.46115907994148	7.30584756204356	0.00388051308522214	0.987776503933106	0.997233411338816
Merged-chr6-15846160-4	chr6	15845670	15846670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	125509.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.1013991140293	5.2444070653122	5.15201317192292	5.45407920269644	5.76806318821819	5.38217269742425	0.763355992337712	0.0305152786457749	0.211240874006459
Merged-chr2-46444104-4	chr2	46443597	46444597	+	710.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	747492.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.09179229946147	5.67507296301563	5.37646181295355	5.34418095234739	5.60671001185528	5.31376622166509	0.0542277712441339	0.885055039484705	0.973538624783452
Merged-chr2-59182160-3	chr2	59181696	59182696	+	634.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	21346.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.06528499535494	4.88150933152528	5.13850236098949	5.0585275406978	5.33929897502252	5.3571749691092	0.481837271988202	0.19201845348826	0.57896940713307
Merged-chr12-101075188-5	chr12	101074664	101075664	+	879.76001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160214, intron 1 of 14)	intron (NM_001160214, intron 1 of 14)	-7287.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	5.46591802450617	5.87688706590634	5.90125306339028	6.50937583244714	6.48618142289388	6.21174726745945	1.12318100724656	0.000338772668513402	0.00770390713355101
Merged-chr9-5306733-2	chr9	5306233	5307233	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 9 of 10)	exon (NM_009807, exon 9 of 10)	-2116.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	3.60783303826529	3.5393180604338	3.5439239742695	3.45241677540296	3.32236330852951	3.50655814065101	-0.526495635755743	0.361079023513147	0.747045188435076
Merged-chr4-123917323-4	chr4	123916780	123917780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017475)	promoter-TSS (NM_017475)	-153.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	8.50709019434872	8.75189718177228	8.19721845973684	8.50294182095949	8.47602278382708	8.11135886183575	-0.18229671780614	0.468361773869283	0.818555901703744
Merged-chr11-96407926-3	chr11	96407416	96408416	+	865.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42158.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	4.42669821451052	4.73090907831281	4.45523881641939	4.08734891168781	3.85741967451677	4.35210972073482	-1.20905146613512	0.0134952042013023	0.123671424155632
Merged-chr11-100571257-4	chr11	100570756	100571756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-3683.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	6.61768225196487	6.77057242286203	6.53640083147094	6.66421435646036	6.927961071833	6.77788974418168	0.232196707255763	0.376692670946747	0.759336465825071
Merged-chr10-98881708-4	chr10	98881218	98882218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-32924.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.25958325870884	8.31459543596123	7.89769577443837	8.08502456838722	8.37258404518634	7.78078697395466	-0.091031336321501	0.727741096545265	0.930210012156297
Merged-chr10-69275495-3	chr10	69274987	69275987	+	788.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	62293.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.27914582529383	3.2827567613865	3.34505905226586	3.58635348347008	3.26487831914713	3.52600897001242	0.620697059201175	0.306738966432256	0.702981130880964
Merged-chr10-37337508-4	chr10	37337013	37338013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198587.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.94792078791377	8.3722607029447	8.11291128761011	7.92979437469913	8.30675809307908	8.07809589775652	-0.0575706103979706	0.813399758117089	0.955940138311315
Merged-chr19-5810481-4	chr19	5809983	5810983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTTG)n|Simple_repeat|Simple_repeat	-7811.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	7.78547976830068	7.42361877742369	7.43179198875527	7.48312789060356	7.55086055471077	7.14548800786692	-0.217728581227983	0.402897362329721	0.778365878954155
Merged-chr13-86018769-3	chr13	86018261	86019261	+	756.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28034.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	3.48303475703633	3.41608631795307	3.46101654445661	3.15413456182975	3.29401038292127	3.12785894625082	-1.01610061868218	0.105226078371734	0.432934412878582
Merged-chr11-19019776-5	chr11	19019326	19020326	+	903.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-857.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	5.17314724822315	5.57034573891558	5.50249568392851	5.89653625641428	5.97292410151484	6.12281267943552	1.04310413297462	0.00164257844186368	0.0265595932745032
Merged-chr11-11785742-4	chr11	11785238	11786238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23224.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.68081286938579	4.63761310552756	4.97819329265988	4.66471282035092	4.50520584996402	4.72446990233586	-0.321101660102414	0.441393291138685	0.802592884094921
Merged-chr13-99288092-4	chr13	99287576	99288576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56602.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.61725328997789	6.46712901085909	6.68723882420312	7.08662647232592	7.27373569810515	6.89968183132063	0.799553573255448	0.00220663751324164	0.0332807493568625
Merged-chr5-105528232-3	chr5	105527768	105528768	+	965.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	8797.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.844279325373	4.86672483860382	4.35510419266008	3.9058094773384	3.80738691588033	3.96992987814621	-2.31934433281985	3.89746501444975e-06	0.000178284919693422
Merged-chr3-121629480-4	chr3	121628974	121629974	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14011.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	2.55964303416508	2.42023186813985	2.52409397969006	2.67823209645731	2.68848324108121	2.78622186542281	1.2425218536347	0.109600498644657	1
Merged-chr1-6406586-4	chr1	6406078	6407078	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47247.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	3.53832378051082	3.6073800385474	3.50505252869224	3.68586742651751	3.89614284006702	3.74029670400926	0.778060430412998	0.157720401758387	0.529198725332145
Merged-chr9-70848186-2	chr9	70847686	70848686	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86622.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.2266705744235	5.29272663927462	5.35275099838187	5.01482293034826	5.21821213768066	5.05844454882794	-0.369633129237625	0.300008719393198	0.696725102575237
Merged-chr5-32461248-1	chr5	32460748	32461748	+	543.0	f1_c57bl6.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	2278.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	3.47163334823865	3.35711447145385	3.53709353499273	3.48447333834207	3.40767791541471	3.65817149129933	0.223999127506705	0.699980638800175	0.920780791926092
Merged-chr7-123205528-3	chr7	123205028	123206028	+	853.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9338.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	2.76788340324071	2.91538075528793	2.9186572577306	2.68545019172334	2.67532142014934	2.75056379174311	-0.88429283369672	0.224842977192945	0.619740315016701
Merged-chr2-117052570-2	chr2	117052070	117053070	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER3D-int|LTR|ERVK	-68501.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	3.66769043233923	3.72007215065339	4.03226817463169	4.05599996624879	4.05809968290513	4.18948838852409	0.898936171540654	0.0814428229714074	0.377489662088061
Merged-chr9-22084545-2	chr9	22084045	22085045	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253897, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	882.0	NM_001253898	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	4.18514072231589	4.50034796557835	4.34431730822435	4.4774823549889	4.37003418545984	4.17753838085953	0.00287634163744736	0.995038122860441	0.998961028701257
Merged-chr19-46396837-4	chr19	46396336	46397336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015752)	promoter-TSS (NM_015752)	-60.0	NM_001025391	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	4.87581636217009	4.77751629967053	5.07815523921312	5.00216066546016	5.1408923310748	5.32691477269693	0.5360096525851	0.158759572677677	0.530580157180119
Merged-chr2-131078006-1	chr2	131077506	131078506	+	737.0	f1_c57bl6.idr	exon (NM_011426, exon 10 of 21)	exon (NM_011426, exon 10 of 21)	8759.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	3.33969881112153	3.46216925652461	4.01060764369736	3.57984577984044	3.43516236770351	3.55969440894146	-0.364966143209739	0.557676988800625	0.864302294338175
Merged-chr3-95519094-4	chr3	95518582	95519582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-7704.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	6.37481456478649	6.51171811620671	6.6561624111887	6.29105797390863	6.8595164972193	6.87646553714499	0.301663831684149	0.315815202506894	0.710072183587161
Merged-chr4-145271335-2	chr4	145270835	145271835	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 12 of 12)	B4A|SINE|B4	-24465.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	3.42919974323002	3.67322468283406	3.88856278771699	3.59167667470601	3.65177181380396	3.91030751740505	0.16528319008515	0.773779328008831	0.944183453856367
Merged-chr7-126976944-2	chr7	126976444	126977444	+	848.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026638, exon 2 of 6)	exon (NM_026638, exon 2 of 6)	1030.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	5.87549512484764	5.96109752866497	6.06809464080367	5.86664131469262	6.01074748535851	6.12817145162242	0.0644924076460315	0.828158068026346	0.959633697141491
Merged-chr6-124907965-4	chr6	124907463	124908463	+	950.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008479, intron 5 of 7)	intron (NM_008479, intron 5 of 7)	3742.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	4.27215731642351	3.88870911573468	3.73019490200899	4.51166552920627	4.54783804606356	4.4209422847439	1.35718646322709	0.0094354351188956	0.0965675258624616
Merged-chr7-44993810-2	chr7	44993310	44994310	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029410, intron 5 of 6)	intron (NM_029410, intron 5 of 6)	3769.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	2.05493615169077	1.88487796673489	2.08046053228424	1.81241329203238	1.64528074676673	1.81597399363821	-2.58732617996539	0.0272467279602066	1
Merged-chr4-128734384-3	chr4	128733889	128734889	+	878.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6818.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.78335695296316	7.02591032489745	6.75410433292552	6.47853693174979	6.76105546214552	6.32699301381093	-0.496430500397565	0.0780263191387061	0.368845675182172
Merged-chr9-77919336-3	chr9	77918835	77919835	+	950.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	1970.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	3.31166814363018	3.35099972430137	3.19448311791347	3.42904746565943	3.03039836944287	3.26748934598697	-0.165757652928941	0.797806557303112	0.95181421173875
Merged-chr12-113075249-4	chr12	113074742	113075742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291444)	TTS (NM_001291444)	740.0	NM_001361920	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	4.73097623583589	4.65417444407935	5.19622933400992	4.70178043960119	4.84732662524624	5.04308619536045	-0.00722804536653456	0.986379487178447	0.997033990984076
Merged-chr5-9093753-2	chr5	9093253	9094253	+	775.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6984.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.39393709914567	3.58194238883167	3.50659945061768	3.63540183289498	3.50007822634201	3.92541539533208	0.674857705119267	0.246690698572749	0.643782025373544
Merged-chr19-10266641-4	chr19	10266128	10267128	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 5 of 19)	intron (NM_198114, intron 5 of 19)	-25880.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	3.11153665202073	2.73342676138578	2.91778989020007	2.84200785063992	2.83157782991431	3.10689946740882	-0.0155738052999035	0.98287531708682	0.996152077177068
Merged-chr13-95038445-4	chr13	95037956	95038956	+	988.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172263, intron 15 of 19)	L1MA4|LINE|L1	62112.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	4.77075191969702	4.68907050589405	4.39482053159695	4.86431484925031	4.89313560904686	4.60243001930622	0.37526202940247	0.377182243468868	0.759616521190546
Merged-chr8-104338102-2	chr8	104337602	104338602	+	870.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2492.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	2.812016652329	2.85641162609128	3.079600717272	2.72833940686729	2.65666976610443	2.92489196640829	-0.750040688508708	0.305487852577724	0.701604675920959
Merged-chr13-44272012-1	chr13	44271512	44272512	+	631.0	f0_balb.idr	Intergenic	RMER5|LTR|ERV1	-55525.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	3.05490405398231	2.83400650699839	2.97842922537827	2.84538984734648	2.90965589296457	2.93131858845191	-0.304098382024211	0.660723937148443	0.906114982224232
Merged-chr2-32647464-3	chr2	32646971	32647971	+	955.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146348, intron 1 of 14)	intron (NM_001146348, intron 1 of 14)	876.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	4.20435630831681	4.11680440978459	4.51309388005076	3.73055659656847	3.70060479998566	3.83707535786731	-1.60652996231729	0.00213161880619682	0.0324077722685958
Merged-chr19-29369691-2	chr19	29369191	29370191	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	2253.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	5.55772334201693	5.65816403348308	5.9167659593564	6.39874342367349	6.4037675281213	6.07139032739139	1.04135442474429	0.00073372014858345	0.0141749213195569
Merged-chr4-133494622-4	chr4	133494128	133495128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	3922.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	6.98775096972169	6.52159938217581	6.91234745999135	6.47192113631811	6.69848216994213	6.81567380853775	-0.240264989544837	0.399454070337744	0.77585841000614
Merged-chr6-120150715-4	chr6	120150218	120151218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43105.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.45558121070234	5.44812748340163	5.19925510343204	4.84601446124116	4.67827358267006	4.82847955505823	-1.27936726291891	0.000600834617663012	0.0121670106757128
Merged-chr1-181127296-3	chr1	181126795	181127795	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026171, intron 9 of 22)	RSINE1|SINE|B4	16909.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	5.34884979363582	5.22433914348555	5.30948493280611	5.42675261274472	5.44775399228921	5.24364413628596	0.177239352790513	0.603930268587087	0.882883084260734
Merged-chr15-101268078-2	chr15	101267578	101268578	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1232.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.49048483589176	3.42711218232295	3.58026765846839	3.65581505671484	3.14288531120761	3.54535325512038	-0.13091398764392	0.833874399698479	0.961117866939703
Merged-chr8-125727957-2	chr8	125727457	125728457	+	717.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-6246.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.20464387396508	5.27372760775515	5.59991825853814	5.58199866002564	5.44061513147061	5.92191079764728	0.55832956172335	0.121034748584521	0.465240419467863
Merged-chr4-155959489-4	chr4	155959011	155960011	+	861.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039157)	TTS (NM_001039157)	-2801.0	NM_026125	67389.0	Mm.29140	NM_026125	ENSMUSG00000023571	C1qtnf12	1110035L05Rik|C1qdc2|CTRP12|Fam132a|alipolin	C1q and tumor necrosis factor related 12	protein-coding	2.69524661279324	2.40981896664456	2.55831993372769	2.80092417603647	2.5073449761771	2.93957120575855	1.07320183386544	0.187553636209759	0.572695888504281
Merged-chr17-57449783-3	chr17	57449311	57450311	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 16 of 22)	intron (NM_001355722, intron 16 of 22)	91125.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	3.05895744482892	3.19920084243741	3.13983166465218	3.17148801172483	2.9543233899602	3.21167749302155	-0.100381915794115	0.878355224386552	0.971848664619312
Merged-chr11-79224682-4	chr11	79224188	79225188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18336.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.75131283388386	7.89843841934119	7.7038279021958	7.90458029490334	8.16027110133617	7.88824305006847	0.293381746405891	0.194599662468631	0.582015337863121
Merged-chr1-173737871-4	chr1	173737356	173738356	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	3953.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.31061684398404	7.49598364410262	6.80546679307439	6.77844581121044	6.87267822855619	7.11827105469212	-0.484435601449646	0.0946605328912169	0.410136490273995
Merged-chr2-36237864-2	chr2	36237364	36238364	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 4 of 10)	intron (NM_008969, intron 4 of 10)	7438.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.17197925644433	5.89386589296324	6.45151296121613	6.15455791882073	6.42828875681613	6.18918681524635	0.148420214933775	0.634849481231546	0.89636184389676
Merged-chr10-43833065-4	chr10	43832587	43833587	+	897.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131055, exon 3 of 3)	non-coding (NR_131055, exon 3 of 3)	7180.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	3.69775825787963	4.08755451623638	4.09814188644556	3.67010972455213	3.72051458309348	3.88769459996692	-0.672253520431128	0.214921738735796	0.608170317702451
Merged-chr6-4979042-2	chr6	4978542	4979542	+	592.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75722.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.6935979009193	4.72846964298669	4.61451903289789	4.31116748338372	4.2998501496347	4.38423561078757	-0.891319622019803	0.0362044871459219	0.234058335019332
Merged-chr4-70546371-4	chr4	70545879	70546879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-11451.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	3.04985155872714	3.00061771182205	3.18963158254074	3.12296980547393	2.94265663999236	3.36803762356024	0.304140026819178	0.651222253158808	0.902745027970277
Merged-chr9-61948209-4	chr9	61947724	61948724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1425.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.25924348647968	4.17398100702984	4.06963389101064	4.21007557961111	3.95998301663035	4.18623586882793	-0.163369600859241	0.733975503536981	0.932325051544019
Merged-chr1-54913055-2	chr1	54912555	54913555	+	963.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	13332.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.38765565452738	5.33519749444316	5.39881206167758	5.2685634531389	5.26206827156621	5.34108324482958	-0.168301522753622	0.617487823718609	0.888810836054056
Merged-chr16-93835343-3	chr16	93834844	93835844	+	870.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	3223.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	4.33506339461009	3.97830604531085	4.34699764789698	5.04963496480714	4.46733090776301	4.74681215880609	1.36632399370914	0.00436858049230674	0.0556151844559148
Merged-chr10-99354093-4	chr10	99353576	99354576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90845.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.55156218667883	5.47661953039611	5.36104313786578	5.38952170136689	5.37225547350811	5.08286432224884	-0.333601732840871	0.337526361731103	0.727414835127997
Merged-chr14-65884982-1	chr14	65884482	65885482	+	763.666687	f0_c57.idr	Intergenic	Intergenic	47680.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	2.8374834551128	3.11405591977276	3.10086316034251	3.33078543894064	3.51825766369716	3.45896444717091	1.7860160895713	0.00835013639279711	0.0887191930047982
Merged-chr5-99364679-3	chr5	99364167	99365167	+	960.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111740.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.56803446570262	7.86045417002104	7.59969538690802	7.25642544880215	7.40693294622078	7.03983962039591	-0.635157993644506	0.0108475879524288	0.10640175625907
Merged-chr11-46817917-4	chr11	46817417	46818417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 3 of 8)	intron (NM_178759, intron 3 of 8)	7118.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.236931528803	6.71361610494335	6.74238051947533	7.37925495945492	7.25008205859229	6.57050967382203	0.295659549435841	0.366210229674893	0.751283584197618
Merged-chr4-102625154-4	chr4	102624634	102625634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35291.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.74860408251312	7.80330565936855	7.58985576768844	7.69999001537179	8.16261225623037	7.75776110845909	0.254809920105289	0.30292077723805	0.699641276240207
Merged-chr3-127299595-4	chr3	127299094	127300094	+	978.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	109464.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.54981026179784	3.52352935210284	3.89291431495355	3.82678932642376	4.07633600857762	3.7106741549508	0.777401802157777	0.168448771722899	0.54506046592946
Merged-chr15-25227747-3	chr15	25227245	25228245	+	900.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	186019.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.70222438856986	2.9944773683615	3.03039728425632	3.10734735182835	2.93047800018478	3.15969341985474	0.699208944569809	0.324864865033254	0.717759668463529
Merged-chr8-66393084-4	chr8	66392558	66393558	+	943.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	6757.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	5.24371641665883	4.89022836070155	5.11046752140427	4.93490035151853	5.18903715186388	5.17452253774037	0.0357135140465536	0.924988137726829	0.983085374624298
Merged-chr10-80039828-4	chr10	80039319	80040319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-160.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	5.5712499036018	5.47753735250796	5.52223381076765	5.38453685265787	5.75683736355029	5.69322020469516	0.189893773780188	0.56847909039637	0.868598429274735
Merged-chr5-129786129-3	chr5	129785658	129786658	+	777.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133900, intron 1 of 7)	B1_Mur1|SINE|Alu	1095.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	5.73157903472735	6.04282049994316	5.65055163894352	6.00161089818576	6.30944693544397	5.56303416049813	0.319054185407328	0.373623805211903	0.757529198534216
Merged-chr6-145121770-4	chr6	145121261	145122261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	22.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	8.16389307852736	8.37780569223167	7.961988141405	8.23892225508688	8.49580390806307	8.09340521375034	0.151681330512596	0.529735891724752	0.851048470960073
Merged-chr4-150349864-4	chr4	150349313	150350313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	(TCC)n|Simple_repeat|Simple_repeat	67897.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.87653235672074	5.1146390826212	5.11558702153461	4.62349802276162	4.99087104166958	4.86660658244484	-0.42683975417174	0.28398642623443	0.681626404191722
Merged-chr11-60106171-11	chr11	60105666	60106666	+	948.7727050000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009021, intron 1 of 5)	CpG	1153.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	7.70836618052147	8.12887200348869	7.95905319771176	8.00828660570603	7.85749370783333	8.0078476370566	0.0178343048711316	0.939192694220982	0.986609421918463
Merged-chr3-95281832-4	chr3	95281327	95282327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173347, exon 1 of 8)	5' UTR (NM_173347, exon 1 of 8)	249.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	7.39820071247926	7.64816822425886	7.25891454570468	7.54635594211824	7.87254644510431	7.38643825199283	0.255640647550209	0.330345303658348	0.721867972104254
Merged-chr10-67285400-4	chr10	67284883	67285883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001036293)	promoter-TSS (NM_001036293)	-102.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	7.85893587791551	8.14546239440637	7.77510914497248	7.95398971825556	8.05136592105191	7.86530002294634	0.0287951753875725	0.900761619249225	0.976979808706155
Merged-chr15-82339757-2	chr15	82339257	82340257	+	571.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-931.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	4.2478553643251	4.19932772697114	4.1313738306134	3.94931335844166	4.09571330254456	3.95443810410286	-0.54573285312877	0.258623020051316	0.656162466533417
Merged-chr4-123019148-3	chr4	123018641	123019641	+	759.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151450, intron 1 of 9)	Lx8|LINE|L1	2548.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	3.69685026331741	3.55313378123178	3.87254085863441	3.62335128712839	3.81342734879471	3.84491485024979	0.189821765446994	0.728483921001808	0.930478966998914
Merged-chr5-151190272-4	chr5	151189790	151190790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163493)	promoter-TSS (NM_001163493)	-97.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	4.12843007808048	4.59274263848443	4.56496212456647	4.81678371766942	5.00573315957661	4.59041287819024	0.904731463755114	0.0466998809087107	0.273397853419545
Merged-chr1-86504307-4	chr1	86503763	86504763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-22294.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	7.17537069771568	6.97013265672338	6.6580787473172	7.04459371079345	6.98701763947813	6.51536814672689	-0.123597676434437	0.675554677037748	0.912197928643375
Merged-chr17-35136405-2	chr17	35135905	35136905	+	985.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252469, intron 2 of 23)	intron (NM_001252469, intron 2 of 23)	691.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	6.15815344120533	5.79372146261248	5.56882648959467	6.32830831895167	6.14549514125963	5.78021779390092	0.409538450699132	0.239233592065416	0.636041649599057
Merged-chr18-58659442-4	chr18	58658970	58659970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025478)	promoter-TSS (NM_025478)	-12.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	6.78155385398652	7.02743771022361	6.82368036741192	6.59149682055343	6.52307154991804	6.56039772772648	-0.516161002272175	0.0447471434735853	0.266713489552298
Merged-chr3-95523955-4	chr3	95523463	95524463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2823.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	5.37362979552844	5.2631479311497	5.70096481441665	5.93857685445687	5.91893389478629	6.04188009736596	0.954741313075485	0.0034391758872741	0.0466297779417147
Merged-chr9-90240052-2	chr9	90239552	90240552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	MTE2a|LTR|ERVL-MaLR	30717.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.16342029438678	5.52739552968926	5.61480668833085	5.32096979594419	5.72837387358035	5.54118602145404	0.197864231237204	0.584150666228502	0.874520926995472
Merged-chr3-95954435-4	chr3	95954041	95955041	+	856.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	YREP_Mm|Unknown|Unknown	25284.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	5.3328781846175	5.33698593327143	5.06612816992784	5.23953319060072	5.16466140559707	5.02142256535244	-0.226655777648173	0.530876098437632	0.851363932161699
Merged-chr14-50930109-1	chr14	50929609	50930609	+	1000.0	f1_balb.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	740.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	7.45169761907137	7.71295444277678	7.56271973248568	7.45746908134601	7.73261004050123	7.47951729101614	-0.0186356143311346	0.937596332526025	0.986057836872162
Merged-chr17-24936555-2	chr17	24936055	24937055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001163447, exon 1 of 32)	exon (NM_001163447, exon 1 of 32)	422.0	NM_001163448	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	6.77161880396048	7.17072358727103	6.55028588536976	6.74309090245436	6.81093953811817	6.73000124819166	-0.16396010110858	0.566248044418363	0.867257533499542
Merged-chr13-43770308-2	chr13	43769808	43770808	+	867.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14804.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	3.71112988766567	3.40756645465193	3.36537826546191	3.55404782579884	3.404875079054	3.43811157662185	-0.158220312701764	0.791333501287829	0.949737938863565
Merged-chr17-80772641-4	chr17	80772124	80773124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44599.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.76840310955006	4.63812819271036	4.66014831918592	4.65665843720557	4.6371483960411	4.47194228643528	-0.224290240428386	0.585839892871217	0.875131338300747
Merged-chr2-5942681-5	chr2	5942150	5943150	+	748.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081131, exon 1 of 17)	exon (NM_001081131, exon 1 of 17)	142.0	NM_001081131	209692.0	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	3.13299505765672	3.10149599912334	3.0618221932615	3.13499830840765	2.91240459864444	2.8187635281541	-0.62189295686467	0.369522069154417	0.754199183923683
Merged-chr11-3160571-3	chr11	3160065	3161065	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 9 of 32)	MTD|LTR|ERVL-MaLR	32898.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.33344577394392	6.73586725922373	6.72165556623077	4.49187758011349	4.06780939456932	7.27642412640098	-0.629273679902302	1	1
Merged-chr11-58953988-3	chr11	58953448	58954448	+	825.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178218)	promoter-TSS (NM_178218)	564.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	5.05264377439895	5.15535200606807	5.09958811786516	6.35976799474493	6.93140801949166	6.19574225061199	2.59100044886829	4.09241317478103e-13	8.34611557468579e-11
Merged-chr10-67051053-1	chr10	67050553	67051553	+	706.5	f0_balb.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	45935.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	3.64670772185882	3.39421953048264	3.7897243515196	3.65760211249996	3.58598739600549	3.65831785548832	0.0674635582933979	0.905626680026645	0.978425344945364
Merged-chr9-25540374-2	chr9	25539874	25540874	+	929.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	58777.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.62467489750217	3.44981191859761	3.78716893402833	4.00605787318776	3.87610260116052	3.75401224105516	0.879928356298771	0.109132702096214	0.441427850715675
Merged-chr6-113483359-4	chr6	113482844	113483844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-12.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	7.62395710404146	7.89247084853368	7.68952171514988	7.55436071909445	7.73857863222396	7.55799786146313	-0.171677819937841	0.456259330786018	0.811500468034179
Merged-chr9-56962604-4	chr9	56962083	56963083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	11659.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	5.71933637933787	5.77716229649209	5.59348842170687	5.69506280982377	6.0144078774358	6.15725636073188	0.4649273324024	0.148427007346856	0.513953991981574
Merged-chr19-40665182-1	chr19	40664682	40665682	+	794.0	f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	B1_Mus2|SINE|Alu	5412.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.17183138261742	6.05022461198751	6.40314921103916	6.08085272432389	6.03577160461573	5.87409271733302	-0.343802408692468	0.249303865363505	0.646251553365766
Merged-chr10-81544576-2	chr10	81544076	81545076	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	CpG	470.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	6.21821502100958	6.40216165057882	6.06128549676897	5.90499135544684	6.04000256590657	6.0540709188314	-0.4129538823204	0.159971988308025	0.532501868349568
Merged-chr9-121642678-4	chr9	121642175	121643175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-41.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	4.14145157572062	4.52336550241448	3.97640919505613	4.43364806631814	4.31929003737133	3.99421305861245	0.0622291130594449	0.904644348641226	0.978142219404953
Merged-chr17-26090456-4	chr17	26089922	26090922	+	963.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011933)	promoter-TSS (NM_011933)	-258.0	NM_011933	26378.0	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	3.83732034456733	3.92915051922288	4.06977491767984	3.91763473665978	3.96698801240398	3.94894965889872	0.00860265722156225	0.986297152831149	0.997033990984076
Merged-chr15-35870513-3	chr15	35870013	35871013	+	836.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177151, intron 44 of 61)	intron (NM_177151, intron 44 of 61)	67733.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	4.47271012479633	4.28139298654521	4.92070631745442	4.2708011647598	4.41200549015508	4.6392419547917	-0.323941082997952	0.497118343258674	0.833442633454308
Merged-chr1-91216635-4	chr1	91216131	91217131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016894, intron 2 of 2)	intron (NM_016894, intron 2 of 2)	-33673.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.7326743218043	3.43744116760689	3.21997672870501	3.49651469424427	3.4068117769014	3.41581843026425	-0.177315532484824	0.776247994417646	0.94480820353868
Merged-chr5-139405229-4	chr5	139404750	139405750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1137.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	8.73613828618456	8.66104423933721	8.28123527212895	8.56317788870175	8.84407665974711	8.22302403290325	-0.00482936459793728	0.985204822722044	0.996873682039026
Merged-chr2-50642409-4	chr2	50641910	50642910	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-267274.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.13207887614135	3.20934380059825	3.15191486624041	3.18259996054147	3.04458437752014	3.10596162216875	-0.241724808576147	0.705950821638049	0.922834459892351
Merged-chr1-88287689-4	chr1	88287147	88288147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10068.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.74065431359047	3.81798006000374	3.80266873298366	3.8464066197036	3.68642982603045	4.15023673569534	0.349039164093547	0.516471861046316	0.844290327414415
Merged-chr2-173739331-4	chr2	173738831	173739831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	B1F|SINE|Alu	1760.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	7.14568498135514	7.17231861562462	6.74506108864871	7.28573725306576	7.42593400113008	6.93083575186688	0.293287279697896	0.291772639318523	0.689235268138963
Merged-chr5-68735374-4	chr5	68734861	68735861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	606348.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	4.62223367801909	4.45642198978693	4.35024187762614	4.58411384969579	4.49350712409093	4.85822592052658	0.381488772037172	0.383501348278414	0.76494131641868
Merged-chr4-155511127-2	chr4	155510627	155511627	+	694.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	19766.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	3.81174689522393	3.93217046047266	3.46150750483104	4.33035570333762	4.02227536785416	4.14267013100159	1.23188481653767	0.0317645988648848	0.216150804189643
Merged-chr19-4758015-2	chr19	4757515	4758515	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025717, intron 2 of 3)	intron (NM_025717, intron 2 of 3)	1490.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	3.13923790280193	3.00325290703013	2.91843962206774	2.90360217506394	2.8649281858137	3.16561385394861	-0.22734432664416	0.74329433036643	0.935574668962892
Merged-chr19-23142091-4	chr19	23141603	23142603	+	994.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010638, exon 1 of 2)	exon (NM_010638, exon 1 of 2)	877.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	7.38496047310288	7.55823283489555	7.37978897022942	7.64223699922018	7.57431046286032	7.47929027671391	0.179332021488767	0.430138260699614	0.796105989515053
Merged-chr2-165858954-4	chr2	165858428	165859428	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-755.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.14480628524855	7.05464087535193	7.22098503717239	7.08136104835025	7.23317027895415	7.50864433995853	0.212635366315933	0.397246309943917	0.774172544449443
Merged-chr11-99202070-2	chr11	99201570	99202570	+	978.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	28947.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	4.41263804072426	4.24535037364782	4.42261158086701	4.42859952665946	4.25504794581127	4.60919067036996	0.178386393332732	0.692499958494387	0.91870248759071
Merged-chr7-73622643-2	chr7	73622143	73623143	+	874.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63920.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	2.59342527171433	2.523447185249	2.72887647781084	2.7941077370462	2.6841050260415	2.86214417014183	0.905966689676734	0.227163321862599	0.622281668659856
Merged-chr11-62221257-4	chr11	62220768	62221768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27716.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	3.7176149377316	3.65253370560256	4.13277268931149	4.10470618399793	3.7122251179831	3.77255086211637	0.100294845229864	0.858588238447303	0.966933063363181
Merged-chr15-96287615-4	chr15	96287260	96288260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175251, exon 1 of 21)	exon (NM_175251, exon 1 of 21)	238.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	7.63191059957194	7.71580325979703	7.43564330298568	7.67957392069541	7.49779106459886	7.66944347889882	0.0126142806710749	0.956406133299694	0.989887454023164
Merged-chr9-118925444-4	chr9	118924928	118925928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1108.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.25394647882392	4.24676997313646	3.93727302867709	3.81634976085839	3.80383058192332	3.67864036184353	-1.1898393365308	0.0230798266011667	0.177619886406759
Merged-chr13-114818823-4	chr13	114818327	114819327	+	966.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113375, intron 1 of 5)	intron (NM_001113375, intron 1 of 5)	590.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	7.06150240129182	7.63895731885836	6.90336792889058	7.45299912274919	7.56946653588438	6.83454588008174	0.120793756380031	0.71387371194211	0.925624053657378
Merged-chr16-58497812-2	chr16	58497312	58498312	+	703.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	25614.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.90290412873716	5.84942664802934	5.68000076518656	5.62825087106766	5.52462365292666	5.71546396419419	-0.37411440236744	0.233669124457589	0.629920965070533
Merged-chr14-70994539-4	chr14	70994025	70995025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104418.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.3183375020073	5.4374080772427	5.54448071492223	5.94864186056226	5.84298285879346	5.57883420033587	0.700779869458794	0.0329207425847554	0.221087098385176
Merged-chr11-87759720-4	chr11	87759213	87760213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172449)	promoter-TSS (NM_172449)	-828.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	4.29273252048093	4.08261747753854	4.35380885957599	4.23494047114227	3.98802166466614	4.42019328082735	-0.0767770832574713	0.874364548630366	0.970754540400126
Merged-chr16-4674253-1	chr16	4673753	4674753	+	706.5	f0_balb.idr	intron (NM_030205, intron 3 of 27)	intron (NM_030205, intron 3 of 27)	5467.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	2.96755683235002	3.14945054004292	3.05309424999156	3.06219818296753	3.00657751357022	3.29426146815734	0.266025078442852	0.689334939549971	0.917319650405699
Merged-chr3-51276727-4	chr3	51276227	51277227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-34.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	8.40247197274376	8.44519744115355	8.42833684252969	8.34297292119602	8.27905868923246	8.45638969245801	-0.0937889074114976	0.64243948359089	0.899398873915991
Merged-chr11-85353072-4	chr11	85352550	85353550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-114.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	5.60328690597063	5.20192569979045	5.67924117315658	5.62506970666613	5.75460791351262	5.49258192986445	0.249754645457267	0.474855285397665	0.8216907060356
Merged-chr7-128225361-3	chr7	128224848	128225848	+	922.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12009.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	5.54587690388066	5.40534660653734	4.79513066019528	5.16717908233707	5.11365921033017	4.77645770199029	-0.534497433876851	0.208994811731295	0.600194667444521
Merged-chr16-23245392-4	chr16	23244844	23245844	+	857.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	19323.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.85821294220899	3.65336816242299	3.44545925797799	3.61143514417785	3.76279731965855	3.63340268624263	0.0118674380769685	0.983472676259237	0.99633715643266
Merged-chr6-34675095-4	chr6	34674596	34675596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 2 of 13)	ORR1E|LTR|ERVL-MaLR	-34348.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.02452090557612	5.34365783799482	5.08747504124014	5.33412395301758	5.89210046790001	5.11702631056033	0.673351002982635	0.0978155729253042	0.417064164942457
Merged-chr7-109646691-4	chr7	109646189	109647189	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie2a|DNA|hAT-Charlie	-29542.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	3.29657066583556	3.20988016033904	3.23521699208323	2.94040129189282	3.09163919089043	3.25039215240845	-0.653932992283289	0.316559031503819	0.710619341888818
Merged-chr6-89361871-4	chr6	89361445	89362445	+	947.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 1 of 31)	CpG	668.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	5.52708667011083	4.97698638799518	5.25497579664359	5.57015101896308	4.75810450828839	4.96923925363683	-0.249619349737483	0.573418192299168	0.870156136738611
Merged-chr3-109252435-2	chr3	109251935	109252935	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-88248.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.50959367782435	6.00005298826922	5.74916072847843	6.00141571752445	6.05051410418883	6.17872725443867	0.529728310500197	0.100135898648758	0.421993726860012
Merged-chr6-129275482-4	chr6	129274982	129275982	+	811.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033122)	promoter-TSS (NM_001033122)	-113.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	2.99073851351298	3.13777958170337	3.15712867983712	3.13359769264334	2.97160156548171	3.05383232806433	-0.192336886044003	0.770293271620507	0.943392092118189
Merged-chr6-116719116-4	chr6	116718607	116719607	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2349.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	5.71988015090058	5.82673599174437	6.04010430104412	5.95286059783837	6.16050409910352	6.12191390947675	0.390619648743903	0.196689521164228	0.584656761837274
Merged-chr13-67831096-4	chr13	67830606	67831606	+	881.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045194)	promoter-TSS (NR_045194)	0.0	NM_001309374	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	4.56837006821699	4.71081838129844	4.70332616837159	6.47259684487209	6.70229081634678	6.0640872450081	3.48127427934558	8.79640229877127e-20	5.63023878827815e-17
Merged-chr12-85745935-4	chr12	85745434	85746434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-605.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	4.09937130261254	3.8157812910645	3.72265642725844	3.88848551969328	3.5012285285543	3.79399132118057	-0.517341028531393	0.3576958105408	0.744246280500086
Merged-chr1-133130042-4	chr1	133129539	133130539	+	952.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1127.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	8.41945288273923	8.78899085518352	8.45908003423578	8.45853791097584	8.9126853040783	8.50891414180302	0.109076346428488	0.656351061473093	0.904644460166826
Merged-chr6-134110012-1	chr6	134109512	134110512	+	559.0	f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	74312.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.62579721684866	2.48774344972807	2.82610847792718	2.58580550657191	2.5873780074311	2.53074017454402	-0.445818066294043	0.568733632749315	1
Merged-chr8-75094451-2	chr8	75093951	75094951	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010442, intron 1 of 4)	B1_Mus2|SINE|Alu	833.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.50991902455667	6.48173540577388	6.47429615694648	6.37375632050777	6.66841809676064	6.34402848778134	-0.0114918366333687	0.966647739364972	0.992349609766636
Merged-chr2-90542266-4	chr2	90541729	90542729	+	928.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	38418.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.12578317074709	6.02437544848054	5.86209390140914	6.55277950111889	6.4432855414716	6.27202767260645	0.694410055672833	0.0160118452312188	0.138941872770806
Merged-chr5-41845303-4	chr5	41844770	41845770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-955.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	6.33989582383288	6.54428311424757	6.55425762190306	6.52666000598462	6.79259886633337	6.50820859157015	0.231495614295032	0.397654043621566	0.774569227267419
Merged-chr4-129742917-4	chr4	129742413	129743413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-610.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	7.22698530958159	7.07355423633205	7.5269559027003	7.39839609171852	7.66933724739801	7.51642339172936	0.375558787483766	0.138281359666368	0.496960021384664
Merged-chr5-143043510-4	chr5	143043008	143044008	+	956.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	69512.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.65072661783895	5.96682956654149	5.62699350209731	5.69893199499705	6.00446292467402	6.05885428659954	0.289555062580452	0.375700904938942	0.758886605954294
Merged-chr17-73934529-2	chr17	73934029	73935029	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	15667.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.28762950703626	5.30506260406401	4.79595947648351	4.80298771028275	5.08508967340593	4.64995455679323	-0.626238490152056	0.139777972629412	0.49955525927962
Merged-chr12-79625920-4	chr12	79625416	79626416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	298817.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.29282151478231	6.40992202241049	6.6405748881124	6.34781069494947	6.39696867938618	6.55392672000485	-0.0259823009522107	0.9255857512551	0.983230173300268
Merged-chr4-136891022-7	chr4	136890443	136891443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007574, intron 2 of 2)	intron (NM_007574, intron 2 of 2)	1971.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	6.85676517121266	7.3522389768562	7.72508114547585	7.88512558211827	7.78484897046419	7.84631677233223	0.703218526999579	0.0152195722059512	0.134048537594802
Merged-chr4-32251793-1	chr4	32251293	32252293	+	641.0	f1_c57bl6.idr	Intergenic	Intergenic	-165642.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	7.41153829184297	7.40951546281203	7.2727949403727	6.84322087756394	6.94876617334112	7.08890232201563	-0.617276331127263	0.00976741851709967	0.098908039426899
Merged-chr19-46488740-3	chr19	46488223	46489223	+	811.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015752)	TTS (NM_015752)	-12925.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.17363484831232	4.9633608480992	5.42025734815753	4.8674316665928	5.010128060593	5.25286500924557	-0.298767866675292	0.442495535735084	0.803210868548523
Merged-chr6-113038134-4	chr6	113037624	113038624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	6.26105443380852	6.3948801465062	6.02296315961103	5.85695573038751	6.18462910913648	5.75046788120203	-0.483848695870589	0.128387687494314	0.479272071137105
Merged-chr7-25632859-4	chr7	25632336	25633336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007533, intron 5 of 8)	MIRc|SINE|MIR	5212.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	5.76417598842845	6.45100529131863	6.13808423935348	5.69357289467288	5.47265931542172	5.43085438136812	-1.09176747869791	0.00190875815459367	0.0298145652206548
Merged-chr3-121597420-4	chr3	121596920	121597920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46065.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	4.67883887615408	4.72445519103792	4.50223526392755	4.98627488898542	4.86407747286756	5.03730491896874	0.706916116131739	0.0765385707173427	0.364316766331941
Merged-chr9-55172370-2	chr9	55171870	55172870	+	667.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	22287.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	4.3885795898708	4.72982367469279	4.90815370265534	4.48016186559817	4.20305908507771	4.76623803802105	-0.471400774423145	0.317650923457569	0.711488816362686
Merged-chr2-118158289-4	chr2	118157790	118158790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46414.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	5.82508281177414	5.78604196355202	5.9376547792993	5.76432704746984	6.17362524319939	6.17131913505533	0.358713653922145	0.250876184691828	0.648248729142217
Merged-chr1-85894556-4	chr1	85894049	85895049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022417)	promoter-TSS (NM_022417)	39.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	7.55802782682299	7.86521033723667	7.73990064279469	7.65950646287192	7.91102323025914	7.77929816166767	0.0898322490781417	0.699096032622913	0.920515737149593
Merged-chr17-78418142-4	chr17	78417646	78418646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285946)	promoter-TSS (NM_001285946)	6.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	7.3595627579559	7.08897385889353	7.23653427961798	7.30030523231227	7.31656346319311	7.40462918836391	0.157786268469212	0.504943088182666	0.837927424057615
Merged-chr13-74208654-4	chr13	74208161	74209161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	39.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	6.18997837197817	6.35872683660144	6.70979860527646	6.27727352648555	6.13849399528748	6.46673830090138	-0.221816170435617	0.464602262619059	0.816459397744841
Merged-chr7-110773343-4	chr7	110772856	110773856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	752.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	6.52214384192349	6.23734313416027	6.67536890827588	6.36669677239286	6.59361972091683	6.53930117573801	0.0372051166671903	0.896100599766991	0.975747732221155
Merged-chr17-27557050-14	chr17	27556685	27557685	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039356, intron 2 of 5)	CpG-6152	532.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	7.90496820219277	8.01928934621511	7.84796327923379	7.82209376818554	7.7677405252347	7.94346311015514	-0.123937650576516	0.566847345960471	0.867634455258659
Merged-chr3-144704765-2	chr3	144704265	144705265	+	895.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 5 of 10)	L1Md_F2|LINE|L1	15570.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.33998667045899	6.46262740274596	6.24176593568945	6.56436507721265	6.71319436164112	6.53388393472443	0.409463851745161	0.128085394731812	0.478719378558352
Merged-chr10-123198083-2	chr10	123197583	123198583	+	637.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	3.04033588247861	3.14495817565229	3.11104651582561	2.91489211570284	2.75899185717508	3.12589713397303	-0.778034822330636	0.265112169521742	0.662860627571611
Merged-chr17-65728211-1	chr17	65727711	65728711	+	545.0	f0_c57.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	44541.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.70958614816708	4.81728835702459	4.92390284275151	5.31752539877999	5.17115769865762	5.12975401898628	0.852095412560748	0.0221587856752317	0.172817343562159
Merged-chr2-61577804-4	chr2	61577326	61578326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	-760.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.02176993641	5.81687977032245	5.41583133246539	6.47789402700419	6.51615366426168	5.73920676516193	0.878168222543998	0.0195744341788694	0.159115017396494
Merged-chr1-165618525-4	chr1	165618033	165619033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16008.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.04953490186859	6.97702336707023	7.12995198396191	6.41647114100254	7.02466269526612	6.54005615802841	-0.536272043514592	0.066522806651003	0.336918235791385
Merged-chr13-46727719-2	chr13	46727219	46728219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175749, exon 1 of 22)	5' UTR (NM_175749, exon 1 of 22)	130.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	8.88345655518247	9.01327909417757	8.78144902063767	8.5408831626257	8.68417017995498	8.75546538830505	-0.325682150122007	0.112655757431136	0.448338447691312
Merged-chr16-18416380-3	chr16	18415873	18416873	+	893.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-2879.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	5.00482495898685	5.39778938158499	5.36046723923058	4.93844401915415	4.56171979564614	5.04986665762817	-0.874353380750886	0.0317778673643388	0.216150804189643
Merged-chr8-108714568-8	chr8	108714074	108715074	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007496)	promoter-TSS (NM_007496)	-70.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.63650401851642	6.60951487898804	6.74724103940035	6.53209083354774	6.36872909158881	6.45800278171392	-0.336358340769871	0.197661321714652	0.585805105555675
Merged-chr2-117018662-4	chr2	117018165	117019165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102406.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	7.46127245728448	7.43375153569277	7.2874899569962	7.36416821423994	7.69183145731163	7.14678794956487	0.0487413687736005	0.850830652027641	0.964981271430729
Merged-chr5-150596856-2	chr5	150596356	150597356	+	879.181824	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2331.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	5.37695369410501	5.23792918508173	5.54997964562105	5.7769853555877	5.66457197887546	5.46808757803408	0.502284360025748	0.136353890954979	0.493353820687576
Merged-chr12-99381062-4	chr12	99380563	99381563	+	843.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 2 of 5)	Lx4A|LINE|L1	69011.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.85646842172444	3.55893024288235	4.09895721053541	4.30587845065681	3.81415393611356	4.25423196118352	0.856320412560594	0.126655072887001	0.475595257221969
Merged-chr6-128843238-4	chr6	128842749	128843749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16934.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	6.93776658413686	7.00930219000379	6.70568280943931	6.70526783235526	7.15648553315608	6.79672272672942	0.021621523144979	0.937684035749327	0.986120160850216
Merged-chr10-8022195-3	chr10	8021670	8022670	+	730.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-66047.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.15102012791634	4.06803716597072	3.99309952738395	3.94225309150827	3.80937756191465	4.24449869272775	-0.223085869206507	0.661000609392576	0.906246109292722
Merged-chr3-138488765-2	chr3	138488275	138489275	+	814.0	f0_balb.idr|f1_balb.idr	intron (NM_175224, intron 1 of 10)	intron (NM_175224, intron 1 of 10)	607.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	5.20913551533867	5.21599424054833	5.08130308916333	5.28101236617342	5.12575612061687	5.03872021372822	-0.0406994571415356	0.909720072216669	0.979601081144038
Merged-chr15-99470905-3	chr15	99470255	99471255	+	800.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029236, exon 2 of 2)	exon (NM_029236, exon 2 of 2)	3975.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.51836088037395	4.19215057267822	4.02631631093807	3.89965857772028	3.85949705053856	3.99529666445919	-1.0308672850341	0.042508240109657	0.258441154686858
Merged-chr12-99622315-2	chr12	99621815	99622815	+	628.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	5659.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	3.03073379663729	2.91743676152162	3.22478683658102	3.25358371452415	3.33514285413022	3.60934284149319	1.46258288689744	0.0276001617266031	0.198200936993803
Merged-chr2-129330758-4	chr2	129330270	129331270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20798.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.37710699488121	4.12681030531099	4.48272190660783	4.31189022305988	4.12918962487073	4.38501673855179	-0.155072436987306	0.740423636644236	0.934528157499283
Merged-chr6-99523472-4	chr6	99522955	99523955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2462.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	7.43366840325671	7.14823016545838	6.95868144658205	7.38154012284052	7.48456738540697	7.21745286329963	0.248907050330556	0.336829825296796	0.726861060604748
Merged-chr1-88654882-4	chr1	88654403	88655403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47288.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	5.7945032804328	5.36485580655285	5.66094750834385	5.33362864940883	4.90333844919848	5.4813824121891	-0.715822654786285	0.0608830031553997	0.319729072912919
Merged-chr2-164804998-4	chr2	164804479	164805479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	-98.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	7.65932582668044	7.86338557808411	7.37175530001161	7.46088746053959	7.71177887103696	7.39517122908718	-0.172430305861173	0.500407507693043	0.834978949366358
Merged-chr8-39308336-3	chr8	39307846	39308846	+	908.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10366.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.76553386553873	4.10071777804653	3.89754818657846	3.23374101654193	3.14136800824344	3.3195838968328	-2.81932047444864	1.59197616793859e-05	0.000598577284147466
Merged-chr6-42352591-2	chr6	42352091	42353091	+	797.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2763.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.62676265344813	6.41034758093088	6.27702162609269	6.31799318683529	6.54852734363201	6.57892110515825	0.0523194600069558	0.852453057144676	0.965385693881201
Merged-chr11-110996394-1	chr11	110995894	110996894	+	575.0	f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	L2|LINE|L2	-1093.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	5.23319860910329	5.44843833564093	5.4287914747822	4.7848399338293	4.8513318893889	5.31928611641403	-0.783354945338913	0.043018857852419	0.260157942014978
Merged-chr5-103719353-4	chr5	103718848	103719848	+	846.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34814.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	4.02972094655443	4.21493572677272	3.84624774351756	4.47206365256098	4.41936920822675	4.27825975098976	0.943498243409292	0.0535849277629667	0.29681126687492
Merged-chr15-73734244-2	chr15	73733744	73734744	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	9314.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	2.62817410791065	2.39634041040247	2.58288122791864	2.35869399455257	2.22674464935079	2.53224590218536	-1.0524212514117	0.216818604996889	1
Merged-chr3-86142707-4	chr3	86142219	86143219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016959)	promoter-TSS (NM_016959)	-51.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	6.9845956013653	6.73086369228125	6.59316212923099	6.85537897782243	6.68607717552037	6.50746392428741	-0.142690847437088	0.604928828235355	0.883270183371776
Merged-chr2-145833383-2	chr2	145832883	145833883	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	47267.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.06464249804195	5.88427085459998	5.85542901470856	5.67408659049521	5.56559853101374	5.86827785145009	-0.439218870476587	0.160107286674209	0.532705251913135
Merged-chr10-69352332-3	chr10	69351855	69352855	+	873.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007659, intron 1 of 7)	intron (NM_007659, intron 1 of 7)	557.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.36083019118854	4.33496297859215	4.2533262402401	4.59752220911914	4.46874742780084	4.45791352149868	0.484170168214317	0.266422108160951	0.664166899200562
Merged-chr5-140642696-2	chr5	140642196	140643196	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6335.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	6.67743842110936	6.66244310563848	6.90091698330001	7.15335932102583	6.95673429876578	6.73354061795857	0.341506872769541	0.198990212935951	0.587423864896856
Merged-chr10-13963238-2	chr10	13962737	13963737	+	599.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2838.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.84340930586146	3.56943138655427	3.82571738738684	3.85439010045141	3.68306891473956	4.03622390473308	0.348409733690489	0.522669362949707	0.847682942091387
Merged-chr4-106678933-4	chr4	106678399	106679399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028209)	promoter-TSS (NM_028209)	45.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	4.67858135177065	4.80092641412336	4.4635751674071	4.81767054600458	4.67657200189927	4.53240236482062	0.0475584743533688	0.910390300807446	0.97984424692051
Merged-chr10-24133387-4	chr10	24132902	24133902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15887.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	3.8339355552818	3.53819805937628	3.73554578176118	3.40632191583387	3.43634014150781	4.12048593472391	-0.0503423016624807	0.936115914778261	0.986034863960057
Merged-chr10-77969882-4	chr10	77969379	77970379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-7.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.98691909697502	7.97165272865645	7.98716298133653	8.23257786968715	8.32981342265308	7.99017493826091	0.306285071817155	0.161059562731761	0.533698004623889
Merged-chr1-191333585-2	chr1	191333070	191334070	+	661.25	f0_balb.idr|f0_c57.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	7605.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	5.54565505175289	5.26152299691363	5.1920838964316	5.12342668167217	5.55470120499317	5.47585951655107	0.102758553675922	0.780115064986008	0.945949149660645
Merged-chr11-117197538-2	chr11	117197038	117198038	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2123.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.942200189396	5.89887696548948	5.64739293640773	6.02516832613995	6.02738479768903	5.71060595487376	0.165533878297895	0.599846980971494	0.881262559681411
Merged-chr11-50291034-4	chr11	50290521	50291521	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	1315.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	7.94302995650279	8.18721391827537	7.84721632836125	7.90230420259602	8.33735066833549	7.99854093059628	0.133434974538753	0.586741114628347	0.875655897836385
Merged-chr13-111935311-2	chr13	111934811	111935811	+	734.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67375.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	6.41319882398203	6.43190748909201	6.20986460525181	6.21120663845405	6.24597906189797	6.02227874019894	-0.317391561765582	0.262188007998699	0.660046527994061
Merged-chr3-100618690-3	chr3	100618180	100619180	+	959.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 7 of 12)	intron (NM_010763, intron 7 of 12)	66793.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	3.69946661866277	3.91470397842488	3.53815116530315	3.23277354067667	3.52194937823476	3.43874527275507	-1.16495768219331	0.0566472400333296	0.306868720618053
Merged-chr9-99229610-4	chr9	99229086	99230086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001244762, exon 5 of 5)	exon (NM_001244762, exon 5 of 5)	7653.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	5.78460328363784	5.80657932637557	5.41064946155523	5.39182998941047	5.6862814406405	5.41096329377518	-0.332136178259231	0.337432109696944	0.727414835127997
Merged-chr10-81140303-2	chr10	81139803	81140803	+	728.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	4032.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	4.32723663556572	4.58168100931083	4.94964531663504	4.66233903146013	4.37583329251118	5.27742421589518	0.416021122295914	0.410857784346313	0.783648241143564
Merged-chr10-34199280-2	chr10	34198780	34199780	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	8271.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.06138459950033	5.71543414803153	6.13024443672849	6.27730421221198	6.50634460850942	6.33175896120512	0.68674587319142	0.0225552371708466	0.174870048959828
Merged-chr2-60298444-4	chr2	60297943	60298943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 34 of 34)	ORR1D2|LTR|ERVL-MaLR	-13959.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.72726152403293	3.89674171035021	3.91851682710985	3.96151350126656	3.63326005232009	4.03403384842117	0.0971676857828325	0.856372404963194	0.966498502206484
Merged-chr18-57878152-4	chr18	57877633	57878633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	-545.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	6.49651740939424	6.73594852912207	6.27206424586705	6.25569132093552	6.37092637543269	6.27003149203206	-0.363759865267522	0.204730947879516	0.595388393371967
Merged-chr19-4396092-2	chr19	4395592	4396592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 1 of 20)	intron (NM_001001984, intron 1 of 20)	985.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	7.22725226840801	7.48389397127149	7.08920193294979	7.20392926555091	7.40421253713131	7.09394663716642	-0.0547147401148327	0.831112667571616	0.960409172059259
Merged-chr3-87562551-4	chr3	87562058	87563058	+	876.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36980.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	3.93920422003638	3.88148502679965	3.65054730571732	3.65650519601343	3.76921892829847	3.77566668190368	-0.330435796530059	0.538266842393638	0.855080856348593
Merged-chr4-116656217-4	chr4	116655715	116656715	+	821.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-4541.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	7.43989149717291	7.60421058387927	7.35794318963677	7.60825118686543	7.89364482687351	7.51196289606926	0.31090947446593	0.201448080490817	0.590984054786189
Merged-chr1-156025294-4	chr1	156024788	156025788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	9529.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	6.53842189416652	6.57716461564793	6.19941970596557	6.20029036070932	6.278957480124	6.17282330697753	-0.392250621730553	0.168238239655632	0.544677928690162
Merged-chr10-37137933-6	chr10	37137429	37138429	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008538, intron 1 of 1)	intron (NM_008538, intron 1 of 1)	997.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.40014543720513	7.66825539108981	7.66332168545445	7.37377825350411	7.7835000050957	7.68451088072621	0.0679020070521713	0.784089499447878	0.947434735607995
Merged-chr3-138976835-1	chr3	138976335	138977335	+	988.0	f1_balb.idr	intron (NM_001356388, intron 4 of 13)	L1_Mur3|LINE|L1	98366.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	2.11712918349419	2.17703867471432	2.2521877143441	1.92359455227739	1.84321017079421	2.13262968602201	-1.82438799155825	0.0730673881620746	1
Merged-chr12-3433408-2	chr12	3432911	3433911	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270988, intron 1 of 11)	B1_Mm|SINE|Alu	6554.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	4.31684420275336	4.69577738875577	5.10739601677906	4.83116057840744	4.99634052236745	4.90684841022767	0.4016443260644	0.372476137150472	0.75631407355027
Merged-chr4-6358956-2	chr4	6358456	6359456	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6724.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.70484527983272	3.89933853242789	3.78378937835574	3.94198293362063	3.56060587326787	3.58231581546786	-0.301376830888949	0.589611549155752	0.876924137242194
Merged-chr12-112643683-2	chr12	112643183	112644183	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-1145.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	4.12629947713629	3.96390941730452	3.8186517323911	3.91036903106133	3.7481799833281	4.03868606665086	-0.261969237001223	0.614167318167918	0.887421941740887
Merged-chr16-91413300-4	chr16	91412823	91413823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	7088.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	7.40582517532066	7.08871129347502	7.24138077678892	7.38409881717531	7.44229343204164	7.22723555429267	0.159315019414168	0.512760802367504	0.84210398297292
Merged-chr16-11385983-4	chr16	11385501	11386501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-19647.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.06198368477292	5.9833564528549	5.99574858326035	5.66266771147947	5.67340369019211	5.87016882454557	-0.50547037538225	0.092607191350764	0.405368992472743
Merged-chr10-118092346-3	chr10	118091898	118092898	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49389.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	4.05870879311502	3.85148269480455	4.39189193352199	5.46653322679104	5.3374743909192	5.25646888124323	3.12085568026198	1.41627402047506e-11	2.22349676784319e-09
Merged-chr10-8370089-4	chr10	8369639	8370639	+	668.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	148686.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.22775570525562	3.55745523457413	3.55019028918622	3.35312652544957	3.19069497614074	2.97467010978427	-1.06748129734339	0.116889749025252	0.456523295823922
Merged-chr5-109548974-4	chr5	109548492	109549492	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10001.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	2.83806482366953	2.65945768106846	2.85164480732228	3.0144539225721	2.99914188322569	3.15924252512907	1.34855084552659	0.0583105295499741	0.312055552011159
Merged-chr2-4551490-6	chr2	4550928	4551928	+	877.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	MTEa|LTR|ERVL-MaLR	-8326.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.22521920902089	6.43517739089549	6.49553915180211	6.22937112253797	6.5171677865656	6.50277099566145	0.0622913465393909	0.825270313117431	0.958787675305787
Merged-chr7-89332377-3	chr7	89331886	89332886	+	618.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	6401.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	2.88677099490369	2.99559086297464	2.92152048156214	2.69474910262362	2.83319664119405	2.81099651084512	-0.77505935367956	0.278158660212735	0.675475432925552
Merged-chr17-36837085-4	chr17	36836573	36837573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-73.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	8.26686190599796	8.25966485064677	7.89217186493025	8.4155857981296	8.36147752316236	8.02778729453296	0.178244108843518	0.459438637403637	0.813650156404876
Merged-chr10-22306655-4	chr10	22306165	22307165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-55.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	8.66719224012093	8.82824382421365	8.44571788503442	7.42224714538923	7.33197806251601	7.06160997848252	-1.95278905213164	8.47265067137102e-16	2.73765212799758e-13
Merged-chr8-66334458-4	chr8	66333944	66334944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-51857.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	5.97763274931155	6.23800438440583	6.09418792389464	6.25928187068896	6.35347798112038	6.1981587805174	0.280984442299276	0.325258221991931	0.718077478450679
Merged-chr4-44167879-4	chr4	44167289	44168289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	167.0	NM_001355181	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	6.99118742443298	6.98550264048406	7.06059253699155	6.95898774767346	7.0013981077682	6.97263093330019	-0.0482357690561448	0.838911830857235	0.962619500530269
Merged-chr8-106054271-2	chr8	106053771	106054771	+	546.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025518)	TTS (NM_025518)	-5332.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	2.50408043522671	2.56015938651881	2.71429795942217	2.53068730271462	2.39414241292268	2.54124589340964	-0.625990717019744	0.427914183336139	1
Merged-chr9-45963540-2	chr9	45963040	45964040	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8291.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	2.92295493158381	2.8099844564791	3.29276021811283	3.1068306945278	2.82477704994452	3.25789058879646	0.229273753441639	0.75272548668977	0.938361009430872
Merged-chr5-64794535-2	chr5	64794035	64795035	+	707.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	-8988.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.14509724945091	6.0647495913216	6.06998725922828	6.15946794632295	5.98842022264266	5.78818289691513	-0.172155336966841	0.56332036240492	0.865926383742263
Merged-chr11-93972435-2	chr11	93971921	93972921	+	637.5	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3900.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	3.96286979472045	4.02410079856406	4.27943741090025	4.1570310946989	4.07447218605517	3.87304389978913	-0.121047350644735	0.809320519063166	0.954721853010197
Merged-chr15-35938016-6	chr15	35937492	35938492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053071, intron 1 of 3)	CpG	254.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	5.67754143521146	5.72430797092954	5.53248486532038	5.81853879178393	5.8583028539283	5.59547833096206	0.215004705490241	0.498721638539758	0.834072922228131
Merged-chr8-46109363-2	chr8	46108863	46109863	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 2 of 17)	intron (NM_207213, intron 2 of 17)	14783.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.45332158077359	3.2880737730533	3.4517489328693	3.08887154040395	2.92072084450405	3.25013166832511	-1.35246209647779	0.0407957836462862	0.251950980898106
Merged-chr2-6722942-2	chr2	6722442	6723442	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-1280.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.63372320187596	4.62241340581621	4.70042247362023	4.28913147127799	4.59198961714359	4.65055702478599	-0.318252006918639	0.457048330264759	0.811993709825292
Merged-chr12-113042836-3	chr12	113042325	113043325	+	621.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	L1MC|LINE|L1	28317.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	3.35135546979811	3.4433401018526	3.54166266884976	3.2654576513178	3.0308016644334	3.50896402306788	-0.674688912151603	0.293662168091545	0.690424156263798
Merged-chr18-39737437-4	chr18	39736935	39737935	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36062.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.55170522184231	4.68539530389937	4.44755446603406	4.57441353373676	4.66398176852976	4.90596763368321	0.338545308116746	0.423224237959237	0.791868419997774
Merged-chr6-148621758-3	chr6	148621251	148622251	+	887.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	2.97575778556493	3.09941604315189	3.14335684963148	3.19846042078212	2.81888757558496	3.09979757614673	-0.124414862655997	0.856644888052671	0.966560323116284
Merged-chr15-25831517-4	chr15	25831008	25832008	+	894.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11790.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.63338571800752	4.38973647866408	4.11208910031977	4.31208559586889	4.37473181131126	4.28160286715768	-0.208815071080334	0.657848980298963	0.904859102731141
Merged-chr1-64531672-4	chr1	64531140	64532140	+	829.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1164.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	5.29465361683322	4.94645004843788	5.0352539369332	5.27212505557052	5.38342653144951	4.91019654134807	0.231452285417216	0.55201176600143	0.861546661145201
Merged-chr10-122559580-3	chr10	122559110	122560110	+	780.966675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10281.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.90100800886534	5.35037045974525	5.3896190448968	5.39925367105042	5.39382560847639	5.45239697430428	0.370729193534755	0.312427191795556	0.707159092574958
Merged-chr18-53088456-3	chr18	53087962	53088962	+	878.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87830.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	4.55114626122254	4.53511828020785	4.44275788468475	5.8859770993916	6.09566333457487	5.46586116052906	2.78376847758195	6.67509778110093e-12	1.12433509346123e-09
Merged-chr2-59231800-4	chr2	59231305	59232305	+	963.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	70955.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.70135861548387	5.26472632366102	5.2335688156399	5.35946469300907	5.18628784842895	5.12448944348061	-0.389955965495597	0.293615810002406	0.690424156263798
Merged-chr8-84423878-2	chr8	84423360	84424360	+	602.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	B4|SINE|B4	8496.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	4.0639402067198	3.67180195726028	4.12970429003024	3.02689538163761	2.9558292633142	3.42155299791007	-3.64615442107114	3.7104669104308e-06	0.000170480690603603
Merged-chr17-73393603-4	chr17	73393123	73394123	+	725.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	5673.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	3.4109731877134	3.35223135411048	3.33303159850144	3.78339959215318	3.35358276774219	3.40638856981419	0.603702092111079	0.32253145357367	0.715978413663286
Merged-chr2-128700333-2	chr2	128699833	128700833	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	1418.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.78510274978917	7.39280905172839	6.64761361788997	6.79328883262502	7.26092248023145	6.58050030296445	-0.110964598274294	0.742868819909319	0.935368371900894
Merged-chr4-134188133-2	chr4	134187686	134188686	+	670.5	f0_balb.idr|f1_balb.idr	Intergenic	ID_B1|SINE|B4	-1101.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	3.535063753501	3.86746727264304	3.7840642872328	3.61670309888117	3.60265332219747	3.29182972576716	-0.751795456080995	0.212376851852702	0.604853065009053
Merged-chr6-125128703-2	chr6	125128154	125129154	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3229.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	3.04689383232766	3.10327553438857	3.33322080409072	3.3802039240655	3.43810070514474	3.4583011140721	1.09226799947131	0.0810293276997496	0.376664150795574
Merged-chr4-59150885-2	chr4	59150385	59151385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38665.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	3.37597284856738	3.03445360380608	3.0815031470087	3.32999145466083	3.5144876626275	3.33661123931015	0.892839420002957	0.171894788704241	0.550350863573931
Merged-chr6-29985237-4	chr6	29984738	29985738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040263)	promoter-TSS (NR_040263)	-91.0	NR_040264	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	6.1185925280183	5.93948714431862	5.77656863067613	5.83647952842346	5.59042605079044	5.58875436720276	-0.505936433537339	0.112289312892353	0.44763602190707
Merged-chr9-62877590-2	chr9	62877090	62878090	+	841.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-15566.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	3.76796188154253	3.72281394715209	3.82570731207717	3.6693597751704	3.66063251886897	4.16479312805505	0.229610905734371	0.67927528150483	0.913693374830142
Merged-chr11-70669353-4	chr11	70668858	70669858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	58.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	6.51639039596286	6.41759563129671	6.70989606149783	6.71496387847292	6.77041342634843	6.55479740710781	0.230072814613209	0.38772187231985	0.767721672469137
Merged-chr8-57653525-5	chr8	57652981	57653981	+	890.8033449999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144731)	promoter-TSS (NM_144731)	-426.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	5.16263101936065	4.81187852777662	5.03880409144553	5.45635009929323	5.52788991902642	5.27550043420695	0.853300636900551	0.0197178433944897	0.159972924450926
Merged-chr17-28692656-2	chr17	28692156	28693156	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	88.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.80639068974829	7.0390431675065	6.89160896910782	6.81173284478881	7.1791572746972	6.87707011375689	0.0877171251454537	0.739306644698239	0.934213727972483
Merged-chr18-23812714-5	chr18	23812195	23813195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8725.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.36481696015365	7.20960321767698	7.36149723607791	7.19854838308905	7.23825245999423	7.03254995050322	-0.218039958820524	0.357686594556064	0.744246280500086
Merged-chr10-88228776-4	chr10	88228294	88229294	+	853.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026070, intron 5 of 6)	intron (NM_026070, intron 5 of 6)	27697.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	4.12883318686316	3.98246096005482	4.15652217005932	4.06544156062513	3.70932060878992	4.3508447256505	-0.0908752942214727	0.864240481826716	0.968269312109804
Merged-chr2-71389643-4	chr2	71389134	71390134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 1 of 10)	intron (NM_026115, intron 1 of 10)	374.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	9.00338629127696	9.28464822952102	8.83476763574536	8.91125511156313	9.37684492854257	8.84486122579129	0.0199352392387109	0.936811595372116	0.986037792257163
Merged-chr13-20784981-1	chr13	20784481	20785481	+	682.333313	f1_balb.idr	Intergenic	Intergenic	-9132.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	5.26358395217096	4.90521438047627	4.82627910139502	4.81107564786411	4.92110240550857	4.73083722727081	-0.417930668519405	0.300025703900991	0.696730171365399
Merged-chr8-35587832-4	chr8	35587343	35588343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081279)	promoter-TSS (NM_001081279)	45.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	4.80635839104194	4.97364967816278	4.98565260602895	5.20089261298545	4.76295185159509	4.86752247274635	0.0749827957089084	0.850758027408521	0.964981271430729
Merged-chr11-50024078-2	chr11	50023578	50024578	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	5.43431964700133	5.22233966235594	5.07622633532634	5.21837628953121	5.42010129912975	5.27769764886058	0.103878132789384	0.772217502098906	0.943713489951452
Merged-chr17-71486766-3	chr17	71486262	71487262	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11419.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	6.98663403342842	7.1941905720631	7.44112961550445	7.93965364410414	8.22100835143554	7.96001268462044	1.21584013935682	9.24011503531085e-07	5.05158667449504e-05
Merged-chr2-160060273-4	chr2	160059783	160060783	+	956.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43630.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.87718911369376	5.64259572957561	6.11477197602847	5.44357853293907	5.51428059188668	5.59284164798855	-0.672677770972177	0.0429349640795891	0.259839442223758
Merged-chr18-75502776-4	chr18	75502286	75503286	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11859.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	6.61399209906147	6.82717653399437	6.8981714749725	6.65565286225239	6.79596665612279	7.03432134005183	0.0798228802866959	0.765766773995077	0.942266152000567
Merged-chr11-6527387-2	chr11	6526887	6527887	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 2 of 3)	intron (NR_045893, intron 2 of 3)	1373.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	5.75823102326928	5.71088986264409	5.46149237267787	5.98328849664344	5.89750180963007	6.04733581883641	0.557062793604592	0.0746907253371967	0.359719041144728
Merged-chr12-98316075-4	chr12	98315588	98316588	+	686.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47453.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.73175731869146	3.61314580072179	4.07124832077467	3.52247266431747	3.70406274518069	3.6124091716822	-0.64120759441763	0.260973838145576	0.658521360261207
Merged-chr11-115073878-2	chr11	115073378	115074378	+	935.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11839.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	3.94458717267332	4.0310955568485	4.19844621026718	3.59798727059687	3.57101315794539	3.95490987718447	-1.11178626021575	0.0407202196371881	0.251652409059057
Merged-chr15-81399713-4	chr15	81399216	81400216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-22.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	7.54679539501203	7.81806605053799	7.61403549305067	7.6570700368789	7.92788055651579	7.25781196489997	-0.0170990397796686	0.949445657030182	0.988195309248553
Merged-chr2-144269459-2	chr2	144268959	144269959	+	864.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1113.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	7.04887352845506	7.81515676723776	7.13983070756044	7.62270843903898	8.13170616518427	7.50320360137742	0.575763853393492	0.0740727816674685	0.358006971246905
Merged-chr16-21651966-3	chr16	21651467	21652467	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	42698.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.78329799822505	3.97902760142059	4.18213547913427	3.93050225803756	3.70202165277583	3.60875579009622	-0.716389476627115	0.190665074844719	0.577134837486971
Merged-chr17-35241935-7	chr17	35241425	35242425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	179.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	8.98914238375413	9.24882813271135	8.68443732313503	8.74149128991065	9.08558271942252	8.74347732027318	-0.177367199514109	0.470503715673303	0.819495618343931
Merged-chr13-110601520-4	chr13	110601024	110602024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206480.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.46760262556169	7.39578297690142	6.7360635363252	7.16708641165752	7.27369179202629	6.53529214041084	-0.309606575584181	0.353206951207076	0.740535792477092
Merged-chr16-75766948-4	chr16	75766450	75767450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030201)	promoter-TSS (NM_030201)	-132.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	7.40248752678592	7.50762159639377	7.04150241702027	7.41074257593014	7.62827381328373	7.29233900538354	0.171152329658547	0.51040059977377	0.840886591313675
Merged-chr15-62040538-6	chr15	62039979	62040979	+	836.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	1222.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.18414587740218	7.44203753667957	7.08146242165758	7.67692620189177	7.81459117226577	7.07009326827895	0.469680823257078	0.106049035674205	0.434664704220445
Merged-chr11-57644586-4	chr11	57644107	57645107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-835.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	5.79259499525862	6.02290917986608	5.92064346678992	5.53532132797163	5.61790652251572	5.68291376327829	-0.553536360641607	0.0751417257937219	0.360971809932683
Merged-chr1-193174530-2	chr1	193174030	193175030	+	989.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153137)	TTS (NM_153137)	953.0	NM_181048	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	4.11999482950869	4.1971947654844	3.78189025777543	3.92617012675917	3.86530276588115	3.85372720961023	-0.521011285612536	0.315980132083487	0.710174351207466
Merged-chr14-31641108-4	chr14	31640623	31641623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025295)	promoter-TSS (NM_025295)	66.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	6.69349513594729	6.88801585709164	6.91816564649987	7.02169715014899	7.0549259227222	6.78396661786	0.20476570244589	0.422767397535549	0.791536876572791
Merged-chr10-81410811-5	chr10	81410052	81411052	+	920.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152732, intron 1 of 1)	intron (NR_152732, intron 1 of 1)	977.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	5.13960999002333	5.13334458511934	5.55696892912762	5.17201217071054	5.21297180304013	5.14964064633597	-0.198084583072688	0.590990085111174	0.877301111216348
Merged-chr9-58266639-4	chr9	58266143	58267143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13479.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.31290856710171	6.22849730142854	6.19148902203035	6.44453520868518	6.32662424113511	6.65067109455591	0.366518236759113	0.188757206522686	0.574230468637721
Merged-chr5-130023861-3	chr5	130023361	130024361	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133768, intron 2 of 16)	intron (NM_133768, intron 2 of 16)	520.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	7.41205513605118	7.61037081144767	7.33313051292755	7.0646661636006	7.37918776499067	7.02940128313213	-0.421225476391562	0.0964517805663626	0.414008757150678
Merged-chr12-79006820-4	chr12	79006322	79007322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178745, intron 1 of 2)	CpG	455.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	6.55481105364371	6.39784838458999	6.73145222439648	6.63704562225232	6.24588235291437	6.32599995516364	-0.238808635507115	0.408442422981896	0.782049987616386
Merged-chr2-28583047-6	chr2	28582535	28583535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290484, exon 1 of 12)	5' UTR (NM_001290484, exon 1 of 12)	244.0	NM_148928	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	6.99992974092954	6.9303265619713	7.01311767627285	7.00419036447309	7.11987791355478	6.9621726297031	0.0851285258535871	0.722872333922559	0.928972897683858
Merged-chr11-58214897-4	chr11	58214385	58215385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019440)	promoter-TSS (NM_019440)	-92.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	5.76621263973851	6.13739174818678	6.18375573936522	6.50583856440462	6.58523052192244	6.28539636938368	0.725356510002564	0.0157097921368453	0.137179177681039
Merged-chr6-134922132-1	chr6	134921632	134922632	+	637.0	f1_c57bl6.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	1731.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	7.22442399930034	7.34173807642529	7.43685638613927	7.45006398238612	7.57998145342513	7.51400856112405	0.271607375367166	0.234386580942914	0.630476359530347
Merged-chr11-115414309-2	chr11	115413795	115414795	+	849.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5624.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	5.84112566134657	5.54333530191491	5.54673618394726	5.38492377848561	6.02009104124682	5.36031865869742	-0.0177452659135059	0.962789655289902	0.990972235433849
Merged-chr19-55217785-4	chr19	55217275	55218275	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	23461.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	4.33486821466439	4.25198917598508	4.27260422492109	4.53935457398407	4.69251662869844	4.56075112756318	0.803512568504591	0.0629946062997433	0.326582878566295
Merged-chr9-85577556-4	chr9	85577068	85578068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	171766.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	5.09138215260507	5.12199038994392	5.09775985421901	4.97167363642343	4.63999936475116	5.48329559555765	-0.0795210612327608	0.852542997219375	0.965410965060285
Merged-chr9-50567057-2	chr9	50566557	50567557	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	B1_Mur2|SINE|Alu	-5789.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	5.80790705466737	5.70365560251897	5.58266964580152	5.64129995351161	5.40549745954385	5.6452510726632	-0.273200605477574	0.400129308377189	0.776372018141352
Merged-chr5-125340049-6	chr5	125339433	125340433	+	816.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1161.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	7.32458869207915	7.79200572357418	7.61848591720441	7.66127723334373	7.97796545769114	7.52879107861907	0.217580683512314	0.408114500615774	0.781926100186554
Merged-chr11-119238302-7	chr11	119237788	119238788	+	930.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175430, intron 6 of 18)	(TTTG)n|Simple_repeat|Simple_repeat	9716.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	5.75717301627262	5.52351469066246	5.32139980488835	5.47745617901172	5.44738707118617	5.31992371980146	-0.258960799445746	0.452831042087446	0.809457484278845
Merged-chr18-4258333-4	chr18	4257789	4258789	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	92457.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.86244281212377	5.12062748352735	5.40159031195067	4.87766520721035	4.5419500130646	4.83053797521148	-0.848494158803215	0.0411279509780219	0.25311941900734
Merged-chr16-78232427-4	chr16	78231925	78232925	+	934.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23029.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.57546930506662	3.71028012542691	3.59109762271244	3.61020146939224	3.54260927182803	3.31481479801446	-0.45388599042923	0.436327571623079	0.799472869647494
Merged-chr12-113098744-4	chr12	113098307	113099307	+	873.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 1 of 19)	CpG	529.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	4.56833548369538	4.22168781453645	4.45471293798272	4.29254149599456	4.12132295778681	4.26033283304043	-0.530308646021592	0.252077175247761	0.649617120850337
Merged-chr17-6747660-2	chr17	6747160	6748160	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	35120.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.82706223702319	5.80605354700204	5.39675183933579	5.61333767579983	5.23528501568301	5.11146800810337	-0.67796396088825	0.0658601812126027	0.33490765497392
Merged-chr17-69223320-4	chr17	69222828	69223828	+	867.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53878.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	7.00190700157451	7.11664098271269	6.98630052494548	7.14575876470013	7.2953746441749	6.91585217537927	0.150937551656987	0.547959844385119	0.859456555901125
Merged-chr8-13154835-2	chr8	13154335	13155335	+	900.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4326.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	6.6749183271719	6.83718077032787	7.03086127595984	6.79241432372584	7.04321399588285	6.90076358090256	0.111307606931366	0.670444161306288	0.910029595108128
Merged-chr6-39004097-4	chr6	39003602	39004602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	CR1_Mam|LINE|CR1	63484.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	8.09334572806559	7.86329189862396	7.3141018637397	7.75061591791906	8.13482239079725	7.75696029622089	0.131792816539453	0.647499167602879	0.901467569151362
Merged-chr4-6792294-2	chr4	6791794	6792794	+	882.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145711, intron 3 of 8)	intron (NM_145711, intron 3 of 8)	198429.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	3.95219135368065	4.107385372978	4.19980560993124	4.08966296542313	3.85527309007297	3.83285578331807	-0.457925030613862	0.365296686934879	0.750427350624492
Merged-chr10-81575311-2	chr10	81574811	81575811	+	739.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252401)	promoter-TSS (NM_001252401)	24.0	NM_001252401	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	2.34237721861587	2.23695501975313	2.47447777892802	2.14018679205101	2.06786257561198	2.29674199493788	-1.33434340945252	0.139814617117197	1
Merged-chr14-14602102-4	chr14	14601603	14602603	+	820.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100922.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.85804856125997	3.53479778906658	3.59152300140005	3.62486150791821	3.54865469934665	3.60808003035848	-0.278362678122508	0.621784617368538	0.8908398051148
Merged-chr2-71338274-4	chr2	71337774	71338774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	29280.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.73906988778096	5.98051889052263	5.75607718580393	6.02084003874228	6.08132242047763	5.99181699158613	0.34840927874089	0.246311479754959	0.643402690863389
Merged-chr12-100013056-4	chr12	100012555	100013555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	48556.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.59384693575225	5.68395499809491	5.60379231604322	5.40324203692532	5.57871917456335	5.52557480941793	-0.229948230046617	0.47504828459465	0.821727753368561
Merged-chr15-31614927-2	chr15	31614427	31615427	+	656.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	L1MC4|LINE|L1	12811.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	5.53605007944094	5.73519192117652	6.09219686760239	5.94195403165287	6.23282059940959	6.13173492283251	0.551811879502933	0.0912745061501315	0.402052361447334
Merged-chr19-36409626-4	chr19	36409083	36410083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029508, intron 1 of 8)	CpG	30516.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	5.18363867119653	4.7072426691398	4.87099622422754	4.9429294112034	4.38089455607188	4.70407565436233	-0.557027656748118	0.21137798773472	0.603905867353298
Merged-chr7-35150163-3	chr7	35149655	35150655	+	945.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30862.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.03143637117723	3.53813901671924	3.93556061593271	3.67678222255966	3.54027447612955	3.81095978001053	-0.576896668851083	0.312492773684783	0.707179796811586
Merged-chr8-85028113-2	chr8	85027613	85028613	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026760, intron 1 of 2)	MER20|DNA|hAT-Charlie	1280.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	5.29034680049668	5.16667753761075	5.22442167455627	5.45646324024998	5.49392933395505	5.50254436042831	0.504048228747832	0.133152449976152	0.488227605764583
Merged-chr1-54923501-4	chr1	54922956	54923956	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	MER81|DNA|hAT-Blackjack	2931.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.9690253523359	6.11333011494597	5.77381170672036	5.47174623974323	5.65282101186261	5.83567570949619	-0.561392301411307	0.0809287575410073	0.376427975709774
Merged-chr17-31034747-2	chr17	31034282	31035282	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22912.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	3.39847756218898	3.24422724474247	3.29964976317598	2.95517864647016	2.93212462128091	2.89906937043713	-1.84068845347071	0.00783365278475499	0.0848170057262266
Merged-chr15-25680276-2	chr15	25679776	25680776	+	646.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	57726.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.22455019249985	3.26425806972483	3.29657521440911	3.49201085730389	3.44998344194915	3.63704709011756	1.02168290855566	0.0868815616437261	0.390564148210184
Merged-chr13-43554826-4	chr13	43554323	43555323	+	955.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081059, intron 2 of 8)	intron (NM_001081059, intron 2 of 8)	5368.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	6.20831168301282	6.06117969408014	5.92011492805165	5.87589745593324	5.92528451620557	6.05123153691507	-0.221520618615632	0.455751305541427	0.811115753793496
Merged-chr5-118560203-4	chr5	118559706	118560706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172424)	promoter-TSS (NM_172424)	-513.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.25219665768823	5.54946299886777	5.74255820044575	6.05927902968251	5.15562999287259	5.6705633323252	-0.367327540011961	0.377523851797142	0.759972086763873
Merged-chr2-170330750-3	chr2	170330252	170331252	+	699.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25609.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.18050525568794	4.83031629190891	4.97348662905428	4.57812179122776	4.67666842060264	5.22916456753956	-0.340598714408917	0.432309400232043	0.797278260882748
Merged-chr3-127768208-3	chr3	127767713	127768713	+	917.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	12314.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	3.5496590613027	3.3835790152151	3.45233630932371	3.18963057381427	3.10355910549789	3.57449632612169	-0.655151699482222	0.304470079476848	0.700969682849711
Merged-chr4-9671396-3	chr4	9670903	9671903	+	946.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2059.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.24083008139169	4.27391087386776	4.4802442875901	4.86906831380807	4.45060665672865	4.58875616621426	0.796685732258017	0.0752390245202083	0.361209828772069
Merged-chr2-102977400-4	chr2	102976906	102977906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75741.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.01741500822962	7.67331703077588	7.70258199207808	8.14841780129731	8.17070082522766	7.7407867091557	0.328281255297252	0.188517285554769	0.574100439060177
Merged-chr6-29620443-2	chr6	29619943	29620943	+	956.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10594.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	4.45296244466836	4.64292312838364	4.67078433251734	4.51329018454375	4.47960530499054	4.45032119561513	-0.263225050565783	0.534249876435325	0.853028298475054
Merged-chr13-49307246-2	chr13	49306746	49307746	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1962.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	6.80406962961758	7.05281209811137	6.66492407373493	6.81222707743542	7.04543845678302	7.07426198943235	0.187769022700829	0.479468759567767	0.82426854740066
Merged-chr15-75929201-2	chr15	75928701	75929701	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357005, intron 1 of 10)	intron (NM_001357005, intron 1 of 10)	529.0	NM_031201	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	4.8674558203966	4.94702744272634	5.11716733528985	4.79520587503682	4.76491940630257	4.79679111193118	-0.422483692730537	0.273352354910271	0.670630461946393
Merged-chr3-96635464-4	chr3	96634928	96635928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162387)	promoter-TSS (NM_001162387)	-2.0	NM_011069	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	5.91984646892853	6.13805185616454	6.26936384740968	6.14330088229989	6.09174175974134	6.16926541704959	0.0394289499429773	0.892601965519698	0.975146620821922
Merged-chr7-142444329-4	chr7	142443825	142444825	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009405)	TTS (NM_009405)	1857.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	3.85136317041999	3.70899985392603	3.61924548096923	3.86258791726928	3.84802678649817	3.99833449884311	0.526566742739696	0.319130588071903	0.71309158347113
Merged-chr8-88662522-4	chr8	88662031	88663031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	15184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	6.82545836756393	6.70269263085953	6.75113810784351	6.72946785049817	6.79370937345317	6.74755967851739	-0.0034719678435621	0.988859500041863	0.997430342931925
Merged-chr3-108798516-2	chr3	108798016	108799016	+	900.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011504, intron 16 of 18)	B2_Mm2|SINE|B2	41986.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	5.33609910850626	5.23967716459435	5.50805633369242	5.57262918074977	5.68375346055535	5.57060642870105	0.494106276448554	0.135339543522912	0.49154257303863
Merged-chr2-120539307-2	chr2	120538807	120539807	+	620.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011743, exon 4 of 22)	exon (NM_011743, exon 4 of 22)	24552.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	5.78240487824211	5.79283861776387	6.00180577161298	5.44560834560876	5.95987795015912	6.06215515172012	-0.0155454276379675	0.963583050315937	0.991121100730027
Merged-chr11-55208453-4	chr11	55207980	55208980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	4140.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	6.50797757094228	6.93924900635751	6.75070267009077	6.47793486003681	6.90145726811821	6.73183187597785	-0.0405527024518641	0.887771321818845	0.97386589866981
Merged-chr14-50060725-3	chr14	50060216	50061216	+	744.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVL_2A-int|LTR|ERVL	23963.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	2.69140614799204	2.85919716420606	2.97847215847805	2.84080809118076	2.95606600952979	3.21623813836099	0.785592965000785	0.275847364659454	0.673242318833586
Merged-chr8-10831482-3	chr8	10830989	10831989	+	778.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	50965.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.61927646163509	5.61458917313913	5.06691802443404	5.53107149048658	5.24920781278876	4.89003550765483	-0.411005207958372	0.313798482021149	0.70819321623169
Merged-chr4-130819090-2	chr4	130818590	130819590	+	621.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 3 of 5)	exon (NM_011520, exon 3 of 5)	26553.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.95702202680629	4.19584929391605	4.65289125611174	4.0615198247669	4.27091474462299	4.53577276987159	0.0178839741630607	0.972681889869255	0.993868590220018
Merged-chr16-44962991-4	chr16	44962479	44963479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027578, intron 4 of 4)	MIR3|SINE|MIR	19301.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	6.00250536770864	6.0073688025305	6.4051241892589	6.09888685066947	6.14095888314198	6.22197791218556	0.021937294064137	0.941647145309748	0.987032018177087
Merged-chr2-84619341-2	chr2	84618841	84619841	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	30139.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.59687579621828	6.43990490006804	6.5655813661524	6.74025934129504	6.87654055969256	6.7236817675346	0.399984858773881	0.119491926375143	0.462083733545572
Merged-chr12-84959123-2	chr12	84958623	84959623	+	867.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	11763.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	3.53118080254575	3.61520692985784	3.79808661644773	3.546336038876	3.37164095364485	3.56489961602629	-0.557336881766411	0.330920342827586	0.722226411767471
Merged-chr4-119053823-4	chr4	119053333	119054333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_131914)	TTS (NR_131914)	15278.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	3.3851497694843	3.58087838397365	3.69017100957878	3.27290163678862	3.33784845662517	3.66103313619975	-0.466873807961648	0.44209413059522	0.803076081297089
Merged-chr5-123580296-2	chr5	123579796	123580796	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019765, intron 22 of 23)	intron (NM_019765, intron 22 of 23)	-7281.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	2.8642757309451	2.86827342500722	2.86593468104696	2.86708369153086	2.73266314537456	2.54821354860434	-0.723861887500733	0.341805453740134	0.731017930321085
Merged-chr7-143288371-2	chr7	143287871	143288871	+	730.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	8176.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	4.2689753951806	4.02859544814427	4.53975679156732	4.38854703484461	4.49147325597179	4.2676689960458	0.281067148289605	0.554880154612001	0.862989905297353
Merged-chr6-134266946-1	chr6	134266446	134267446	+	639.5	f0_balb.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-129383.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.63184048473354	3.30503224999599	3.63545774697582	3.02525427060986	2.79985577844152	2.97309713954797	-2.85486852672358	0.000148840327974954	0.00395047853890375
Merged-chr4-32657443-1	chr4	32656943	32657943	+	1000.0	f0_balb.idr	intron (NM_001081392, intron 1 of 101)	CpG	324.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	6.52789397152332	6.81192526160497	6.75744192255049	7.03407009154179	6.98981183022929	6.5268903597	0.274540634637181	0.33130208130755	0.722668404140379
Merged-chr12-52604523-4	chr12	52604028	52605028	+	919.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	U6|snRNA|snRNA	-2206.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	8.07471587304771	8.32064921516442	7.91485789421468	8.06359930745037	8.47698293937092	8.03311710374949	0.133974566531725	0.593646101604072	0.878589727861081
Merged-chr18-3005651-7	chr18	3005115	3006115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117797.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	6.00639179877255	6.83723664915718	6.16697610324623	5.88919498767094	5.99803226000994	6.05021090732658	-0.706508812504121	0.043693388168206	0.262747665151412
Merged-chr16-48829279-3	chr16	48828775	48829775	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12419.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	3.54746326564313	3.42804002162267	3.73255463532922	3.437134368541	3.00901195301498	3.70548516652819	-0.582548181976122	0.387535197716797	0.76768118438771
Merged-chr1-170160742-3	chr1	170160250	170161250	+	842.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 3 of 10)	intron (NM_133806, intron 3 of 10)	14214.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	5.15264718617584	5.333002501022	5.60350347817386	5.61197801566801	5.42162520706734	5.63920858124879	0.367473916193316	0.293459202076777	0.690276375383417
Merged-chr19-12812945-1	chr19	12812445	12813445	+	552.0	f1_c57bl6.idr	intron (NM_134152, intron 3 of 8)	intron (NM_134152, intron 3 of 8)	14366.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	3.80552288799051	4.07658179723692	4.37630591491674	4.07517533070365	3.78637028950179	4.36312773855162	-0.0337862154824791	0.95079983306752	0.988501616477738
Merged-chr7-132574912-2	chr7	132574412	132575412	+	709.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	1486.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	4.15871623037033	3.85534335002191	4.12045430645281	3.861887019601	4.05117504828643	4.43173766706375	0.232935055647472	0.657628972924131	0.904859102731141
Merged-chr17-87294150-2	chr17	87293650	87294650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	11264.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	2.36555062345766	2.29424649707193	2.63104583235374	2.28785483974823	2.18957312177271	2.46188521409081	-0.777777346364763	0.368149720767563	1
Merged-chr15-57976087-4	chr15	57975578	57976578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9825.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	7.7079857557717	7.98524420944772	7.51090046614012	7.92933467170785	8.06842601916853	7.58832783056437	0.183819929491166	0.480445547045891	0.824543506620807
Merged-chr1-131690014-4	chr1	131689577	131690577	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1382.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	6.77241665994124	6.71562519291648	6.64297320993665	7.21562466853775	7.34549954045569	7.23521854404978	0.845010541061573	0.000457795080553155	0.00980340355694915
Merged-chr10-128060953-2	chr10	128060453	128061453	+	767.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	1971.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	4.16971925828083	4.12747102762966	3.88434237107326	4.08775367263798	4.26708256456642	4.05935931004236	0.20837343500153	0.672563732268348	0.910925092123133
Merged-chr12-40543712-4	chr12	40543183	40544183	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	97630.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.84584145761011	5.05823248440878	5.01659861375008	5.00887578276814	5.01320948970249	5.33337564764263	0.300249788759672	0.429363062789232	0.795682190695026
Merged-chr13-49196623-3	chr13	49196117	49197117	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013610)	TTS (NM_013610)	9070.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	7.69750643429739	7.681610956089	7.69063959123344	7.4808999860684	7.60067663811914	7.44779010615878	-0.252716737916012	0.250066859119817	0.647283121185894
Merged-chr2-27352718-2	chr2	27352218	27353218	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	74890.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.69100840524562	4.06831704635192	4.02392041232473	3.9835818014734	3.70522706786801	4.18113769407768	0.075875599218147	0.889270764877226	0.974217570526342
Merged-chr18-31910710-4	chr18	31910236	31911236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	1167.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	7.61144129991792	7.83644716993673	7.87197968505939	7.9465998379555	7.60563901683125	7.99570959164601	0.113647327564964	0.637433244378705	0.897347951989837
Merged-chr9-123931915-4	chr9	123931407	123932407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36785.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.46193798905593	6.29073691553378	6.01744249818285	6.53968064632478	6.43249261879883	6.56473211073058	0.372451112860735	0.194019453906454	0.581296310830689
Merged-chr17-15498268-4	chr17	15497777	15498777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011185)	promoter-TSS (NM_011185)	-1.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	7.31754668512255	7.75788774133347	7.49524373731286	7.73809639953649	7.7718681428202	7.87244024582241	0.366536470431031	0.12963206820165	0.481622840280538
Merged-chr2-26638165-2	chr2	26637665	26638665	+	739.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028572)	promoter-TSS (NR_028572)	-180.0	NR_028572	100306955.0	Mm.27103	NR_028572	ENSMUSG00000097052	Snora43	ACA43	small nucleolar RNA, H/ACA box 43	snoRNA	2.69368986182775	2.65982457627242	2.99327638670635	3.01579283496053	2.98424468649276	2.88712546588133	0.909995886751507	0.211383020703115	0.603905867353298
Merged-chr3-51652916-4	chr3	51652397	51653397	+	862.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8282.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.14106891007267	4.07806639787201	4.03129026075757	3.96790083378392	3.80135764778077	4.09983089096126	-0.400243290640324	0.420929467397764	0.790001108001199
Merged-chr17-29497223-4	chr17	29496692	29497692	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6147.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.67941260762979	2.6050850165094	2.6453743568926	2.77465686999464	2.49853454669549	2.84188993731529	0.351323186367162	0.646985863622807	1
Merged-chr1-13373501-4	chr1	13373012	13374012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	CpG	571.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	7.8033619677588	7.30861708828326	7.67556266368935	8.07607648694892	7.33991058189844	7.92006938223283	0.291288726496408	0.322623824377519	0.715997472916187
Merged-chr10-120113655-4	chr10	120113164	120114164	+	933.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-699.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	6.31502060991893	6.63799289558536	6.41860216724203	6.02768098014797	6.05130776939225	6.09535427616919	-0.685813048698245	0.0159806377502048	0.138801725997729
Merged-chr11-8613113-2	chr11	8612613	8613613	+	636.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	51422.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.17105709750383	3.11002577453549	3.06833850302099	2.87778220171441	2.66715489439812	3.30661991003303	-0.639735417453976	0.398579471541957	0.775273667788888
Merged-chr13-119442304-1	chr13	119441804	119442804	+	565.0	f0_balb.idr	intron (NM_145457, intron 4 of 10)	MTC|LTR|ERVL-MaLR	13402.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	3.34751313484313	3.26356494988761	3.59919923954786	3.48423250947345	3.39343330055214	3.51408764928799	0.223924704063205	0.707459963023288	0.923406217611176
Merged-chr12-31059693-3	chr12	31059197	31060197	+	847.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14271.0	NM_027828	104943.0	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	2.63728853507932	2.65471087765391	2.87560345447389	3.33534278582002	3.62056677852616	3.08396250682655	3.57263961757246	3.66441321097856e-05	0.00121719957867906
Merged-chr4-123139953-4	chr4	123139454	123140454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019489)	promoter-TSS (NM_019489)	-13.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	6.24200052007806	6.4545659376574	6.13674172209844	6.36925301139945	6.19276890984348	6.3021671895506	-0.0106085692053803	0.970265973276141	0.993405767524074
Merged-chr2-27474908-2	chr2	27474408	27475408	+	727.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113573, intron 1 of 11)	intron (NM_001113573, intron 1 of 11)	490.0	NM_023336	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	4.90296685251962	4.73272369636864	5.24672072857557	5.10320574243124	4.99217912775291	5.33842759508397	0.378616382538225	0.342249565983041	0.731283521951228
Merged-chr1-135281555-2	chr1	135281055	135282055	+	912.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	2529.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	5.44696671057087	5.72926278585315	5.70793502214375	5.60550235176944	5.67467809002583	5.84350863293061	0.136891942694809	0.673274955365614	0.911339512071545
Merged-chr12-55560262-4	chr12	55559850	55560850	+	937.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4855.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	4.40349040368825	4.1932394937184	3.85364423786314	4.05995320097448	4.01987581766404	3.81352274878504	-0.588524419089125	0.265150502662842	0.662900157008885
Merged-chr5-99375891-4	chr5	99375391	99376391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122964.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.09421760923045	7.91744865745617	7.92146633603113	8.09210907939064	8.34234161288809	7.88897127232898	0.208440872292272	0.374741650650535	0.758118627242714
Merged-chr6-72092882-3	chr6	72092405	72093405	+	675.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4703.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	4.87018265532102	4.73696168338201	5.15945209089811	5.02761304476192	4.82784562209804	5.09578940464763	0.128268546304763	0.746358485376095	0.936300236930265
Merged-chr16-24932872-2	chr16	24932372	24933372	+	885.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126767.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	7.10807446671623	6.99987178470491	7.34501138559647	7.11200375923334	7.22395367395609	7.15185982813647	0.0218331292342816	0.929215852662071	0.983987942057929
Merged-chr13-3779965-4	chr13	3779460	3780460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	24358.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.51321659788446	4.77593315850494	4.34048118489603	4.34472427187746	4.13100952133728	4.31679490443891	-0.78330469939654	0.0886868783608236	0.395321035766187
Merged-chr17-74709573-2	chr17	74709073	74710073	+	639.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8177.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	2.61677937394819	2.89222676561888	2.76850055206644	2.84912074463219	2.82844883757005	2.96266060177201	0.568374333490781	0.436101769019801	0.799461119181469
Merged-chr11-116102744-3	chr11	116102210	116103210	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	7525.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	6.01525538266472	6.0431951973154	6.04516743420199	6.01936782683341	6.20357556055394	6.43902330837489	0.323871151057209	0.272199601473916	0.66953956602346
Merged-chr15-51991167-2	chr15	51990667	51991667	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 1 of 13)	CpG	593.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	7.66313033223953	7.58937529510529	7.40685806499678	7.74573885365131	7.44817962905678	7.26800177955833	-0.0796418672678584	0.751133645961429	0.937718261890661
Merged-chr11-116110789-4	chr11	116110307	116111307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-572.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	8.80925825936213	8.67280714453159	8.3189744840101	8.31595197430313	8.59900821772968	8.22523329716437	-0.313901508630413	0.196784668471829	0.584746042932789
Merged-chr14-65099542-2	chr14	65099042	65100042	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1436.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.51250396725776	3.81289601735234	3.87413834579305	3.71484683516069	4.08347363010333	4.21341028567484	0.864664655190779	0.121003848042325	0.465186111065687
Merged-chr14-74977148-3	chr14	74976653	74977653	+	856.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	2067.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	2.87937415523535	2.88341919693112	2.82142477998286	2.79569403691603	2.57371482976536	2.89452358469743	-0.558644089219074	0.450059991963645	0.808117861931044
Merged-chr2-102925149-3	chr2	102924642	102925642	+	801.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23477.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.03369364047879	4.83043251394519	4.97288905097062	4.27717560872391	4.1660067090107	4.51081923699122	-1.55995821429838	0.000300061142769598	0.00697221099345788
Merged-chr12-5222923-1	chr12	5222423	5223423	+	547.0	f1_c57bl6.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	152759.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	3.4745012158824	3.46983115771815	3.54745136175357	3.72187127184151	3.81697026105273	3.38736564145236	0.594816511664674	0.308965539447721	0.704802606494279
Merged-chr4-53385873-2	chr4	53385373	53386373	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54540.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.16291476170823	3.36856959919602	3.38114390378351	3.46258548714763	3.24655817646234	3.50561777618935	0.383277347268163	0.532983864721451	0.852086026394268
Merged-chr11-11548040-3	chr11	11547531	11548531	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON26|Unknown|Unknown	58765.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.14118335745254	3.00198020389912	3.04124178252814	3.27014340559617	3.05213177560959	3.393109303862	0.764694062916586	0.246780877559238	0.643905401691724
Merged-chr4-43560504-4	chr4	43560006	43561006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2077.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	7.63964759566444	7.11317982801274	7.31533884619087	7.70306627351947	7.81728716537104	7.48216667850946	0.441355190251268	0.0935172060669347	0.407274138093662
Merged-chr2-145860763-4	chr2	145860235	145861235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028724, exon 9 of 13)	exon (NM_028724, exon 9 of 13)	-42506.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	6.14531907336171	6.13561832942841	6.12739149472729	5.61075569629888	5.38716674374311	5.92624460919085	-0.878626655260005	0.0063515394504489	0.0728060193680882
Merged-chr6-135276960-1	chr6	135276460	135277460	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-22624.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	3.52528933463108	3.47331131778612	3.23937067839337	2.94468357865991	2.98594424400811	3.31188763991003	-1.45398170149561	0.0324841878864124	0.219145800685309
Merged-chr19-3687833-4	chr19	3687369	3688369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1305.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	6.68798019281796	6.31837846743789	6.54445309145291	6.74628196811796	6.93556092528922	6.65501697813923	0.421271931755064	0.126037608345925	0.474777397325473
Merged-chr14-74989510-4	chr14	74989002	74990002	+	750.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14416.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	2.54380945959153	2.56499269206693	2.66042787461394	2.53600650596854	2.43034572223241	2.54665289806783	-0.510620065457691	0.511158372610501	1
Merged-chr1-21218694-4	chr1	21218184	21219184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_029398, exon 1 of 5)	5' UTR (NM_029398, exon 1 of 5)	109.0	NM_029398	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	6.47955227934504	6.5285354766625	6.264737175981	6.30671677700535	6.05105880953833	6.38357479293127	-0.316635603171699	0.269462160660603	0.666576488680077
Merged-chr14-31394149-4	chr14	31393642	31394642	+	918.775024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	23535.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.31794626377901	7.28148425808592	7.5035285852143	7.30923082596686	7.29576208766466	7.28745287252616	-0.100376534276511	0.663731403466564	0.907297356021587
Merged-chr3-133549599-1	chr3	133549099	133550099	+	662.0	f0_balb.idr	Intergenic	Intergenic	-5209.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.27920084637905	5.12845647391671	5.16367059609305	5.20289776637049	5.4332005247561	5.26106660881703	0.234585659544386	0.505432734150714	0.838131669576059
Merged-chr6-125043742-1	chr6	125043242	125044242	+	756.0	f1_c57bl6.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	3894.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	2.51577527210189	2.44410202558168	2.37029777564094	2.55365020419627	2.42986238540625	2.76137534230917	0.805205054310867	0.322624282173527	1
Merged-chr8-117537085-4	chr8	117536578	117537578	+	824.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	B4A|SINE|B4	38803.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.91473467728574	2.92962660395001	3.14017539093302	2.88245991623507	2.68859611309136	3.31682157172005	-0.0489350691057273	0.94785094272546	0.988008807662239
Merged-chr2-180274470-2	chr2	180273970	180274970	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1005.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	4.66480634107803	4.83308381319271	4.5989560849723	4.79898168073213	4.58302094047113	4.53723546917447	-0.146887472653596	0.723797491561739	0.929128417950564
Merged-chr7-90024390-3	chr7	90023900	90024900	+	918.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4759.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.04603854771957	5.98612565248985	6.1017234091419	5.54518373973956	5.6447927308212	6.20155347245833	-0.398504979751717	0.238523020414421	0.635267379893833
Merged-chr5-144965989-5	chr5	144965533	144966533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029438)	promoter-TSS (NM_029438)	-203.0	NM_029438	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	5.36169614916361	5.26390448814855	5.8864337055905	5.60277393930378	5.34157863309755	5.61218708872178	-0.00154571940335733	0.996680080047914	0.999127275997073
Merged-chr4-101167215-2	chr4	101166715	101167715	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	98067.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.50420622469463	4.33858851844106	4.37266857385755	4.27897464767567	4.5740027068872	4.64541903121579	0.248729709230293	0.575930873957498	0.871468560833887
Merged-chr11-104426226-2	chr11	104425726	104426726	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	16065.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.80978364505346	5.95587866769222	6.12396081168961	5.83004948001728	6.19045018219474	6.18406922788087	0.203787377164074	0.511520546157742	0.841435415581079
Merged-chr5-112252666-3	chr5	112252226	112253226	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312884)	promoter-TSS (NM_001312884)	-208.0	NM_021351	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	4.94959868358472	5.16019745428182	5.29810347991557	5.36982279562139	5.27837240003613	5.47723121855517	0.476459471730671	0.18310396570508	0.566085379224821
Merged-chr17-87149943-4	chr17	87149445	87150445	+	766.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42266.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	4.15931030376027	4.32712087796972	4.4058127203025	4.11104475317547	3.90046469538731	4.21666635660839	-0.630701009456794	0.190879372349205	0.577428967011753
Merged-chr8-125199448-4	chr8	125198963	125199963	+	934.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	145268.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.93364254838152	6.40922026402711	5.96020974402404	4.4579755710415	4.08692892335072	4.54952167915872	-3.96849416051678	8.53961709354937e-19	4.72167247586201e-16
Merged-chr11-62847117-3	chr11	62846639	62847639	+	914.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	16.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	4.92101316715469	4.94876569706225	4.87063538179599	4.48571023181558	4.95363474065429	4.97134418294542	-0.204247662167109	0.619917870224781	0.889979882381751
Merged-chr9-41160993-4	chr9	41160487	41161487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2925.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.72567181811365	6.4917255047897	6.56842025045859	7.14774378274488	7.118226831192	7.28806124979287	0.896719517167532	0.000372833347753319	0.00832824622814984
Merged-chr15-79752619-2	chr15	79752138	79753138	+	796.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	9940.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	5.93174110296322	6.06030616698384	6.05021451566732	5.98608525174304	5.57699155568822	6.06751285246448	-0.232685667101656	0.467287773217466	0.817892453953778
Merged-chr12-21374833-1	chr12	21374333	21375333	+	748.0	f1_c57bl6.idr	Intergenic	Intergenic	-1201.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.45086816058424	3.46235456263428	3.52762369741288	4.2948255137933	4.11709746808322	3.82994987482596	2.07672675770203	0.000226747263295136	0.00554265166987712
Merged-chr13-55212572-2	chr13	55212072	55213072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 1 of 22)	CpG	2790.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	7.09037837442989	7.06837485888257	7.06028665373	7.29118415880698	6.98620692252275	7.30914942493524	0.185709125171343	0.452019616557678	0.809286173636239
Merged-chr16-10418012-4	chr16	10417497	10418497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011955, intron 4 of 10)	intron (NM_011955, intron 4 of 10)	6059.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	5.64134365426735	5.76772947348826	6.13827432552791	5.96580949942197	6.02415590138321	6.4686744493752	0.534058428924863	0.112856372402837	0.448707618257612
Merged-chr11-54807914-4	chr11	54807403	54808403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12016.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	6.929442269429	6.76014595718876	6.55759504878722	7.19205486193318	6.96891004846546	6.75503160036368	0.344725480232646	0.208844366700025	0.599958314648662
Merged-chr2-165968390-3	chr2	165967845	165968845	+	775.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24292.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.64029365230874	7.28741818112574	7.46087613433328	7.40967269095739	7.2345495926058	7.23029653536945	-0.260943217187831	0.283800954488087	0.68148750934452
Merged-chr5-64810091-4	chr5	64809574	64810574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6551.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.91582620683129	7.95233536055777	7.78433909871469	7.84771936228729	8.07974655954668	7.44980211814401	-0.0844018015442174	0.741625111995364	0.934887850059998
Merged-chr16-87715434-2	chr16	87714934	87715934	+	773.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_007520, exon 2 of 5)	exon (NM_007520, exon 2 of 5)	16480.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.27836678662722	3.16726592657264	3.30366682733488	3.35112825851019	3.17819087797861	3.26164974594737	0.0609564722037378	0.921533375137403	0.982542868764899
Merged-chr10-14048669-4	chr10	14048175	14049175	+	990.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	82296.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.41588126302206	3.07096640838961	3.20314194521329	3.34453855875623	3.01540521272957	3.15745550299535	-0.263219253433664	0.69292833143543	0.91880752705484
Merged-chr13-102677757-2	chr13	102677257	102678257	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15790.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	2.75955302215899	2.86982225699153	2.7380471343999	2.96504533669495	2.83572336321157	2.99642746764433	0.682159540965176	0.336370447128449	0.726394647547793
Merged-chr2-35337076-4	chr2	35336578	35337578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-69.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	7.68802905348135	7.58672351513004	7.59611180700508	7.67533525965707	7.96719389294501	7.66223240320615	0.227844985018571	0.322711317321348	0.71605919099688
Merged-chr16-75856154-2	chr16	75855654	75856654	+	960.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	53112.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	7.66257790960757	7.15004596131611	7.34178237044782	7.46665997935784	7.52611290003052	7.02065156205338	-0.0581127139079257	0.835916236021419	0.961873866737315
Merged-chr14-30620947-2	chr14	30620447	30621447	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5261.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	6.06008591284568	5.64698306875463	5.94656258211258	5.91292715566781	5.85677897318693	6.05214521218038	0.0761261944711878	0.809332461459819	0.954721853010197
Merged-chr5-115347244-1	chr5	115346744	115347744	+	547.0	f1_balb.idr	intron (NM_007748, intron 2 of 2)	B1F2|SINE|Alu	1711.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	4.34327605829555	4.04445861141527	4.30168957798012	3.98810966907208	4.46154906451136	4.5328871282559	0.303805159744929	0.540824952493759	0.856546234535532
Merged-chr6-70792206-4	chr6	70791713	70792713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-38.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	7.28507934200924	7.40080795693126	7.17952988955205	7.27763284450122	7.46373493470907	6.93718818695375	-0.0579735458767227	0.824595803672392	0.958596193929081
Merged-chr1-173511814-4	chr1	173511314	173512314	+	747.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	24143.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	3.73132058200975	3.75615170946398	3.88216463139707	3.67092732766566	3.53577954609974	3.9031243342624	-0.284774849594505	0.602435383458693	0.882349532183277
Merged-chr1-176801097-4	chr1	176800584	176801584	+	979.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	6040.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	5.43588271400249	5.32259064010653	5.49817417228921	5.72054634326905	5.50551771496773	5.64362420665179	0.392214363484233	0.23232234811435	0.628652941199962
Merged-chr16-13820071-2	chr16	13819571	13820571	+	994.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 1 of 7)	intron (NM_001346109, intron 1 of 7)	820.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	4.97557224512926	4.75858226669163	4.87600166180389	5.2337264678905	5.03373000020704	5.08566601049	0.530193059526317	0.159318777738287	0.531411723644967
Merged-chr10-81364889-2	chr10	81364389	81365389	+	682.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001014836, exon 2 of 4)	exon (NM_001014836, exon 2 of 4)	931.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	4.3717166613662	4.28037529757335	4.46897460245413	3.78890816362639	3.92849556145625	4.1543516289747	-1.17927191690312	0.016460217086447	0.141811742638387
Merged-chr19-24971512-4	chr19	24971003	24972003	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9887.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	4.37056514836936	4.36827564131068	4.22291123684843	4.06979048371865	4.04955774449532	4.29084390022588	-0.536404540697571	0.250130695312959	0.647307401971844
Merged-chr2-164458010-2	chr2	164457510	164458510	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2961.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	4.80171153216555	4.51085529684063	4.87357586965137	5.01363926182334	5.03421464805701	5.32381748395133	0.863865835071371	0.0309503453809766	0.212924046172824
Merged-chr17-33761775-2	chr17	33761275	33762275	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1289.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	3.90501221675991	3.83108658520158	4.38523880718317	3.79841451539642	3.74313293958414	3.9411669189247	-0.694286023633584	0.201369466001455	0.590983018025152
Merged-chr1-171112733-2	chr1	171112233	171113233	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-8928.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	3.24762964853526	3.07846186811108	3.21390595272911	3.11557606499363	3.2382193489536	3.39475205562731	0.291019989379638	0.647005122905639	0.90115442718983
Merged-chr13-30767925-4	chr13	30767436	30768436	+	858.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013674)	TTS (NM_013674)	18703.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.32284531444709	5.8228417650983	5.74586390016497	5.46255132224201	5.83465506112487	5.97068836229042	0.22404084842144	0.532239541577061	0.851971173271146
Merged-chr2-21146755-4	chr2	21146262	21147262	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58603.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	3.58835737735939	3.83632771877802	3.55558905126102	3.60553401796895	3.45476796240745	3.87800024881732	-0.0775000396930848	0.893926051476723	0.975281562029123
Merged-chr17-59021053-4	chr17	59020545	59021545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_145521, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-7723.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	3.77620616629671	3.55406753803089	3.67347500131344	3.66454239712528	3.68287000155373	4.07627299005585	0.465099319358414	0.405526103644567	0.780279107725129
Merged-chr5-3343867-4	chr5	3343399	3344399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	6.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.72862037090229	7.91403380421291	7.5442111312339	7.56045426537139	7.99256361173755	7.55038191172518	-0.0232157865179429	0.928257288194176	0.983802612059568
Merged-chr8-25596318-2	chr8	25595818	25596818	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 2 of 10)	intron (NM_173012, intron 2 of 10)	1169.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	4.50741029332096	5.14847478710842	4.9943074091358	5.1552500307589	5.32468308040356	5.28951144733618	0.722933017981753	0.0792133184308653	0.372058242890177
Merged-chr17-17619240-4	chr17	17618751	17619751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	5238.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	6.03040101801329	6.39879216359931	6.48776647302037	7.0061623219138	7.40125921044559	6.81400785582367	1.24308826915447	3.94008361501917e-05	0.00129327998989552
Merged-chr9-61971287-3	chr9	61970795	61971795	+	956.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 4 of 7)	intron (NM_028748, intron 4 of 7)	-24496.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	5.30824648194142	5.40346855098793	5.46367862565225	5.55776004035212	5.35948989801881	5.63516371365083	0.240009085144525	0.475561280891056	0.822039243417391
Merged-chr11-116413806-4	chr11	116413326	116414326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-794.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	6.65726188189192	6.44880692874144	6.07352894853545	6.61727735502609	6.66624913630459	6.27239632457758	0.179484783114079	0.560902285415195	0.865331098437164
Merged-chr12-83999501-4	chr12	83999007	84000007	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9995.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	4.8791198910381	4.58262214738904	4.0554722560712	4.37144318710461	4.19308192705843	4.01731459243038	-0.904128318444779	0.0857767095097065	0.387863424636076
Merged-chr13-24792531-4	chr13	24792006	24793006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9151.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	7.33383411570447	7.33387016102356	7.75361862293962	7.41477350974971	7.60689756107773	7.63947287898471	0.110640562309208	0.659438552710025	0.905424954521233
Merged-chr11-120577946-2	chr11	120577446	120578446	+	923.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133796, exon 6 of 6)	3' UTR (NM_133796, exon 6 of 6)	3674.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	4.03112475274596	3.67280102519778	4.19450569866423	3.68255026129564	3.79415366731041	3.90171682073181	-0.571447899245538	0.296567514202274	0.693171366955017
Merged-chr5-74729647-3	chr5	74729135	74730135	+	779.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26732.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	2.19716443567312	2.2162105514023	2.26232024300725	1.94448185859239	1.99839553630561	1.93197886819098	-2.21394055584895	0.0300964016833571	1
Merged-chr19-12537415-4	chr19	12536908	12537908	+	898.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35412.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	3.51705140566015	3.42788749153692	3.5195336159355	4.30002499020538	4.58351665419694	4.40704467936417	3.13596940441133	5.10585134771033e-08	3.95943782796161e-06
Merged-chr2-170436487-4	chr2	170435989	170436989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8644.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	2.72955837294712	2.43673065806252	2.43386249050882	2.65647851556442	2.54290709108808	2.70419008210513	0.503105500345439	0.532076092057683	1
Merged-chr19-53452762-3	chr19	53452260	53453260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	12036.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	4.6039563318374	4.74276407278869	4.68853978435832	3.67583749119834	3.58068056188339	3.6799592785559	-3.26760404258792	5.49953330277657e-09	5.32099031462131e-07
Merged-chr2-31077019-3	chr2	31076526	31077526	+	964.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	MTD|LTR|ERVL-MaLR	19474.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	7.07238918880257	6.82565989680345	6.71687942519505	6.36170714802259	6.55291801211988	6.72850330779412	-0.526763076738184	0.0552301543355905	0.30207424425938
Merged-chr11-48869897-2	chr11	48869397	48870397	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1523.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	4.51466722236168	4.67207886654843	5.01658586220993	4.89964939878794	4.83296074431737	4.63948634013024	0.14057284333671	0.739691762517648	0.934245371298156
Merged-chr1-178406436-4	chr1	178405900	178406900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026626, intron 1 of 6)	CpG	382.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	9.37492710444871	9.8353139183219	9.37032290338009	9.30587190192964	9.58849632140538	9.44587589829368	-0.130312011227631	0.572814230694094	0.869934493236159
Merged-chr17-56291297-4	chr17	56290787	56291787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025836)	promoter-TSS (NM_025836)	-776.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	7.07441656370743	7.1167233691853	7.42457839000387	7.42223445594866	7.59366828469763	7.16444737423272	0.306910298399759	0.237068646273452	0.633462039791953
Merged-chr11-75268744-4	chr11	75268227	75269227	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177708)	TTS (NM_177708)	74734.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	5.55121018110485	5.82155111425399	6.00661815280597	5.37385768979193	5.36892944915722	5.17782988505989	-0.908075007893954	0.00897422418387134	0.0933875995362139
Merged-chr8-14523236-3	chr8	14522752	14523752	+	728.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 3 of 15)	L1_Mur2|LINE|L1	-365284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.34591476692289	3.25868700349338	3.40117858018171	3.46647200037361	2.9684272410578	3.4180630780496	-0.13833516805264	0.834383108595634	0.961299492933729
Merged-chr9-7857325-2	chr9	7856825	7857825	+	715.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 5 of 8)	intron (NM_007464, intron 5 of 8)	15845.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	2.55787483778752	2.73788218907639	3.0514722938964	2.79378771608984	2.74042642475156	2.95510632133091	0.184923035115601	0.80850834050529	0.954683711776353
Merged-chr2-103969298-8	chr2	103968769	103969769	+	934.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142336)	promoter-TSS (NM_001142336)	-288.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	8.16763985629248	8.37553186183543	7.89224417814465	8.13233472172133	8.40638606068366	7.94012930332306	0.0202445958121983	0.936237732684743	0.986037792257163
Merged-chr15-8627326-4	chr15	8626809	8627809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83498.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.56395093230593	3.80414755395314	3.86456045274185	3.60985673489044	3.43064602735551	3.68701052355926	-0.599485535495804	0.288919621072894	0.686339790168539
Merged-chr10-40099506-4	chr10	40098934	40099934	+	961.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	L1MC1|LINE|L1	42820.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	5.83524028164675	6.13932193516427	6.27744208262626	6.15966345922221	6.5788093010169	6.37525032569513	0.499074555734096	0.106414050885396	0.435538629910083
Merged-chr14-14640373-4	chr14	14639873	14640873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62652.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.91382456561075	4.87502235522722	5.32252317327067	4.74383297046469	4.72056577054227	5.05392189753935	-0.444941405359382	0.276681497390843	0.674041208769616
Merged-chr4-28420882-3	chr4	28420391	28421391	+	786.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-392240.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	3.06032640889212	3.18727281047682	3.06517592303685	2.76834139527127	2.56935765445244	2.7011656773954	-2.37877670213202	0.00255069191445441	0.0372674227950698
Merged-chr8-46935624-2	chr8	46935124	46936124	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51263.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.26478448685709	6.31519331081555	6.56530008925896	6.27322619444843	6.43642905403208	6.60762962388641	0.100821477758584	0.722005758325188	0.928642281834546
Merged-chr3-65818749-4	chr3	65818252	65819252	+	681.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166659, intron 11 of 12)	intron (NM_001166659, intron 11 of 12)	139497.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.38050618084648	3.20530961739974	3.53283595685613	3.59118546866872	3.56885496372126	3.60315642484009	0.801496101070807	0.173863737643624	0.553140727918843
Merged-chr2-156862243-4	chr2	156861766	156862766	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	679.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	7.54679155477445	7.7279937189239	7.61191415318509	7.64246626708978	8.00437948724867	7.75880522916749	0.265483185999718	0.257986695386272	0.655447374116848
Merged-chr5-107900608-4	chr5	107900149	107901149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016980, intron 1 of 7)	CpG	121.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	6.69266973534996	7.07608447330622	6.83115208343775	6.88616325348107	6.80755280564336	6.57984790311791	-0.169952219205491	0.530906028047853	0.851363932161699
Merged-chr3-89795751-3	chr3	89795256	89796256	+	606.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22147.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	6.44210830666481	6.45616689488897	6.43091218627287	6.2442683598214	6.43829593974585	6.21414165494749	-0.216180677639024	0.427853112283407	0.794749453440736
Merged-chr15-78602261-1	chr15	78601761	78602761	+	587.0	f1_balb.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	5214.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	3.23166605719423	3.85717208257733	4.31533510632828	3.82997170385702	3.37049715355409	3.96991763678947	-0.389378210579778	0.722246592071625	0.92872455507539
Merged-chr6-125548642-4	chr6	125548142	125549142	+	910.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4306.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	3.86986359402621	4.03943131789755	3.61850461517646	3.54402532647498	3.50740815362332	3.84764689770965	-0.756146198567427	0.185406317685665	0.569470877644115
Merged-chr12-84243626-1	chr12	84243126	84244126	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-24745.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.39211735870135	4.89404242074576	4.00736580617705	4.22130546205854	4.26904118805549	4.38020552242169	-0.520098068876206	0.320022495869842	0.713841334732408
Merged-chr7-141902508-4	chr7	141902009	141903009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347562)	promoter-TSS (NM_001347562)	-48.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	6.5445688085784	7.10125191056258	6.77092730369745	6.67614150033765	6.4632849495423	6.60450706712348	-0.393177865219829	0.172282689620371	0.550849140713641
Merged-chr5-125393254-4	chr5	125392749	125393749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3232.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.98789700528487	8.99208637360207	8.17041322849275	8.80652051633629	9.22447741307373	8.43923686051534	0.126139373005669	0.687837743586966	0.917193226920892
Merged-chr10-95867748-3	chr10	95867248	95868248	+	640.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	-72915.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.03982849988922	3.19531389749048	3.40470276886455	3.17914305845529	3.1495444979451	3.14411360880496	-0.242327111278568	0.708193881864998	0.92364138187468
Merged-chr7-88252236-3	chr7	88251741	88252741	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-25844.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.49043090933364	6.5151248286337	6.63054044808512	6.76888043680389	6.97307462021835	7.03509134854795	0.606629829454497	0.01819464778518	0.15199182204199
Merged-chr11-69419569-2	chr11	69419069	69420069	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5894.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.55680308822192	8.49441690654601	7.97523774857115	8.02415742380106	8.36500308727505	8.02339584694487	-0.310116492545351	0.231884513975935	0.628047783269563
Merged-chr17-13007148-4	chr17	13006637	13007637	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-702.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	5.04686235601817	4.98710694326715	5.19578685203701	5.13428078961716	4.90037524499903	5.16369698743169	-0.021395868283604	0.954185330846291	0.989495550016789
Merged-chr8-72548950-4	chr8	72548464	72549464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-654.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	6.2056627837881	6.6790988291493	6.6080138016155	6.25464648590665	6.32882892822284	6.31087384098133	-0.348408021221883	0.23246003716986	0.62876506179153
Merged-chr10-37190240-4	chr10	37189711	37190711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.98029264368361	6.27264285348318	6.08700916780341	6.19709206228258	6.43547102879062	6.35331294473502	0.355541782244326	0.219551603431758	0.613735463896719
Merged-chr4-3685393-4	chr4	3684868	3685868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	ORR1F|LTR|ERVL-MaLR	7247.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	6.44076082170351	6.05099989693172	6.32344775696162	6.4373427221965	6.57166673787718	6.73896711380501	0.494310774866928	0.0863022188755963	0.3891526548233
Merged-chr9-110659022-1	chr9	110658522	110659522	+	701.0	f1_balb.idr	intron (NM_028312, intron 1 of 6)	RMER4B|LTR|ERVK	2519.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.99134861304958	4.03040478544718	4.07885326995136	4.77844930503204	4.68339428789828	4.79232431221936	1.89043493066301	2.77197533241831e-05	0.000963452478946795
Merged-chr9-57528008-2	chr9	57527508	57528508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	B3A|SINE|B2	6776.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	3.94313941464924	3.98767943101089	4.33004407974621	4.28197203486403	3.80865256434439	4.09037724092737	-0.0544797277274989	0.917104307511941	0.981522312365153
Merged-chr16-33337365-4	chr16	33336903	33337903	+	966.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43333.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	4.31289059821938	4.5075252745928	4.08124619535103	4.14055372317882	4.34748720234177	3.99443532549157	-0.380777978924879	0.443557185618735	0.803857432556438
Merged-chr16-57228843-4	chr16	57228336	57229336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	MTC|LTR|ERVL-MaLR	2630.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	6.17890340168216	5.9451897003555	6.32188200850121	6.59745588462214	6.59224124387045	6.627332946755	0.749938453803116	0.00712474057393116	0.0791608243658251
Merged-chr5-145280476-4	chr5	145279979	145280979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2864.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	7.2351833995661	7.7699012616376	7.47269339166762	7.27897487818158	7.31039224558724	7.4056033800545	-0.271591684909392	0.29109220225389	0.688865503402681
Merged-chr2-103051349-3	chr2	103050860	103051860	+	834.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22153.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.66935007929794	4.33932612808488	4.11425047965422	4.02004568728902	4.12860860871318	3.97660838165481	-0.972142977093276	0.0523112443560932	0.292418396350866
Merged-chr16-11457684-2	chr16	11457184	11458184	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	B1F1|SINE|Alu	52036.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.49110285163359	5.71443641583606	5.80799593785952	5.66998077258153	5.93071827707874	6.00713864826168	0.367492769171393	0.254935013286197	0.652024436103169
Merged-chr15-98834328-2	chr15	98833828	98834828	+	866.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-2820.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	2.89810881050426	3.01852240994139	3.32198535307268	2.83647434689356	2.65968654552136	3.63204555401252	0.130439180526174	0.874916992907134	0.970813891247597
Merged-chr11-79658387-4	chr11	79657888	79658888	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175543, intron 3 of 14)	MIRb|SINE|MIR	16698.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	3.21608146841485	3.30144921054688	3.27901882054005	3.88772998268662	3.99154852503642	3.53760767106158	2.08683141870781	0.00068773248462115	0.0134996094787348
Merged-chr1-66815465-2	chr1	66814965	66815965	+	839.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2130.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	7.92281475089943	8.44031506490992	7.6664823769088	8.10561205846184	8.57536813859115	7.99292470529294	0.27634775886788	0.354977295909512	0.741985300392852
Merged-chr2-169927104-2	chr2	169926604	169927604	+	577.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36083.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.27878861798176	2.90113197559696	3.1230175593304	3.42874828954281	3.17430289171618	3.63056798523134	1.24744182175628	0.068285212462426	0.341808094722586
Merged-chr11-119477262-2	chr11	119476762	119477762	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153849, intron 2 of 3)	intron (NR_153849, intron 2 of 3)	13973.0	NR_153849	78439.0	Mm.440446	NR_153849	ENSMUSG00000109408	A930037H05Rik	Gm44935	RIKEN cDNA A930037H05 gene	ncRNA	2.58451326472068	2.47723257364464	2.78572953491546	2.49351762782354	2.3712217138354	2.61958896591127	-0.727738347529696	0.366056501340007	1
Merged-chr16-92714985-4	chr16	92714484	92715484	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-17655.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.25347952929721	5.29894002119782	5.23386615200449	4.6739287551401	4.38498306535406	5.00532497098437	-1.25154958831084	0.00237542018321664	0.035245000464531
Merged-chr1-74373514-4	chr1	74373014	74374014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	-1689.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	5.75184383075091	5.53397263652692	5.60453715117171	5.82666663337773	5.38976264049	5.61156366560181	-0.0329756258352035	0.922331426106326	0.982542868764899
Merged-chr11-79863596-3	chr11	79863092	79864092	+	920.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98795.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	2.97853473401829	3.09403243199185	3.10990955487401	2.86911466357013	2.97758175722128	3.0666008889526	-0.412832268809196	0.539450373756269	0.855912515718423
Merged-chr16-58514549-2	chr16	58514049	58515049	+	977.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	8877.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.00776064789684	4.15535454406932	4.1345825917572	3.7045921574336	3.59150672086957	3.87249467923299	-1.21208900632515	0.0204794028400949	0.163966422762936
Merged-chr1-171234722-4	chr1	171234220	171235220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-371.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	7.14934192661335	7.20787655070122	7.29327148038671	7.45042116551949	7.56493656269665	7.42676185816167	0.401482611343322	0.0786458986745311	0.370469199326901
Merged-chr7-3667492-2	chr7	3666992	3667992	+	586.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_181820, exon 11 of 15)	exon (NM_181820, exon 11 of 15)	-1652.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	2.3159452821787	2.1475171584582	2.4447386164087	2.22101150090728	2.2016480290575	2.05581985483653	-0.988718167713235	0.283429462688153	1
Merged-chr6-28836514-2	chr6	28836014	28837014	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	MIR3|SINE|MIR	-4767.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	2.70403952555125	2.71267777198426	2.72777613049591	2.50463098207582	2.49355676328678	2.6147764096042	-1.04402248558032	0.174564009108891	1
Merged-chr10-13966946-4	chr10	13966439	13967439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	560.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.35161690586874	8.36952722549857	8.20867103192197	8.42841618060698	8.37066027807745	8.25773544256573	0.0578709294744396	0.779390712986529	0.945716196316141
Merged-chr5-120517730-4	chr5	120517237	120518237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	6545.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	9.08638325304644	9.20725735121558	8.56841006068388	8.89969514390699	9.26558451142975	8.53381221033827	-0.0636116360136302	0.822270846099508	0.958041123079214
Merged-chr8-25009817-4	chr8	25009310	25010310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	7112.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	6.62804512335736	6.45695723882742	6.70753087881895	6.91425194439623	6.91184600706632	6.73472049068924	0.41729581717094	0.106008047233282	0.434594013486444
Merged-chr11-52346469-3	chr11	52345960	52346960	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14402.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	2.4358480891523	2.33145359909373	2.32636560785833	2.71357374987815	2.68769959007893	2.79312355502384	2.29224556256806	0.00763428973023706	1
Merged-chr2-124623367-2	chr2	124622867	124623867	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	13071.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.71767091164966	6.03194381819941	6.09347102008229	6.12920213433681	6.041887548718	5.951444044218	0.162506946181494	0.595127431625328	0.879359354512818
Merged-chr18-38185500-4	chr18	38184958	38185958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24304.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	6.44344241233903	6.38334396745683	6.78207910681096	6.45720214058189	6.57155752126692	6.59414682058893	0.00742617993285691	0.978635445966108	0.995160277495735
Merged-chr19-55789332-4	chr19	55788827	55789827	+	820.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	47517.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.92574919844943	4.11288823832437	4.43431155569157	4.167540561648	4.28497443883565	4.11016251045222	0.0846418206535535	0.864568828758564	0.968297921776544
Merged-chr8-11556440-2	chr8	11555940	11556940	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-17.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	7.26396781848213	6.73176688989973	7.24236730227143	7.1486525486405	7.02593550399788	7.23152146679767	0.0539846225021227	0.844100366254223	0.963711687630021
Merged-chr11-100390143-2	chr11	100389643	100390643	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	7647.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	3.1238652690334	3.07733853941661	3.45190244422865	3.35175269074623	3.2578856821038	3.57219914382016	0.69788312321054	0.277102897710316	0.674343034039447
Merged-chr6-90605751-2	chr6	90605251	90606251	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027868, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	871.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	3.32502103651014	3.93122939763088	3.69792235715465	3.5889421875161	3.74368156508296	3.49437788813459	-0.208600515852353	0.734667395864699	0.932581576444515
Merged-chr14-118938873-4	chr14	118938329	118939329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	897.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	6.96511593906366	7.1034000249096	6.7784926483029	6.66821898076102	6.86141646202011	6.83710384267527	-0.26408649519761	0.305184300676108	0.701466127749442
Merged-chr2-14204436-4	chr2	14203921	14204921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-24993.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	4.29942420116352	3.93854982142612	4.17135835558783	3.6046450209309	3.64305252695612	4.10627896832292	-1.06904091195035	0.0536074495963928	0.296847073212774
Merged-chr8-6144813-3	chr8	6144325	6145325	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1039538.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	3.27571617336515	3.43766553986174	3.30368510766199	3.81733735780805	3.78675213423504	3.7682936878838	1.62048587841683	0.00556084323682511	0.0660443397159211
Merged-chr9-41179251-4	chr9	41178738	41179738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21176.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.73861047342141	3.7054767193178	3.41439966418631	3.48854445797244	3.22311046409878	3.70390688726342	-0.549233669112144	0.374019066661186	0.757718602868082
Merged-chr13-113544825-3	chr13	113544328	113545328	+	738.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR52|LTR|ERVL	-41984.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	2.85346258176693	2.77910547179099	3.01046243416556	2.95166363842365	2.93315084720013	2.84245650608908	0.161307390000282	0.817377508977208	0.956767881392089
Merged-chr3-89196703-4	chr3	89196204	89197204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6221.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	6.1673926383563	6.20364615599867	6.33068197851488	6.3331031848048	6.18796107583602	5.58848938358709	-0.242534433436355	0.467788893750125	0.81815434317961
Merged-chr16-31932967-4	chr16	31932465	31933465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-886.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	7.73012805277288	7.99464742769659	7.55958619905857	7.55957111533225	7.95930244307218	7.58651207383434	-0.0830051327167213	0.747178193559179	0.936581057740955
Merged-chr19-47148582-4	chr19	47148066	47149066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4392.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	6.77780704348494	6.73568395353318	6.13844792152681	7.06893286483181	7.21868710551175	6.40516867988173	0.560322061552428	0.104725044737847	0.431833169262442
Merged-chr15-100604723-4	chr15	100604170	100605170	+	946.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4686.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	6.77033273110674	6.80679907461863	6.483129252724	6.51974369194502	6.64167459196308	6.28340638922293	-0.320852339366893	0.251597344258918	0.649084172669086
Merged-chr7-100121052-4	chr7	100120595	100121595	+	970.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133692, intron 1 of 11)	intron (NM_133692, intron 1 of 11)	405.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	7.16106724551677	7.25754657855712	7.04644177528641	6.82751197966938	6.96648118084686	7.10430101727271	-0.2973460758326	0.22770023877001	0.622842513404052
Merged-chr7-99054016-2	chr7	99053516	99054516	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RMER2|LTR|ERV1	87128.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.22257571890377	5.11281050620757	5.11427496408298	5.11326887932441	4.95455550216474	5.42316510513903	0.02364329838648	0.949749651120241	0.988266978933446
Merged-chr12-55361145-4	chr12	55360633	55361633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-23089.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	3.98401898757083	4.0784099193305	3.76527006555716	4.16047255965244	3.72903077199973	4.39644095113002	0.471711890267163	0.395076134582961	0.772579826044138
Merged-chr3-146157619-3	chr3	146157113	146158113	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	7439.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	6.62561563232488	6.58027742686834	6.7432756813366	6.72718987735322	7.10133868090744	6.4165769011995	0.230354344130868	0.437068427420428	0.799765712162923
Merged-chr18-80437140-2	chr18	80436664	80437664	+	651.06665	f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 10 of 12)	intron (NM_026295, intron 10 of 12)	32503.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	3.26290274266867	3.2031156514769	3.22784786170999	3.03046611712285	3.06126001991532	3.18536210201467	-0.614401431944275	0.336503018201549	0.72653508721162
Merged-chr11-111093163-4	chr11	111092673	111093673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27009.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.71447503798313	4.63991681720533	4.89761498937817	5.2419039891052	4.93028030236314	4.99869200190932	0.699769222934044	0.0746312652891195	0.359551407618178
Merged-chr12-111433186-4	chr12	111432711	111433711	+	910.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9450.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	6.03061775139238	5.74057323238623	5.82331989455616	6.01155648287183	5.67688218894087	6.15453670891326	0.138142917371307	0.671886099976485	0.910694246658612
Merged-chr16-22009780-2	chr16	22009282	22010282	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001357424, intron 1 of 15)	CpG	298.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	8.72609289881663	8.75196715683227	7.89442184115574	8.39062777886203	8.58266612046226	8.19796178030396	-0.166363025529677	0.568554931440415	0.868611680411483
Merged-chr8-120572269-2	chr8	120571769	120572769	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 9 of 15)	intron (NM_001145896, intron 9 of 15)	16806.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	4.06687790842576	3.96586253701929	3.9724849385962	4.04342738015944	3.68341927687923	3.89195374065267	-0.390071597482722	0.450884860809714	0.808665506277852
Merged-chr6-35500172-2	chr6	35499672	35500672	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	39716.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	2.77194253572182	3.07117119496112	2.85425796851028	3.01391601999412	2.83194484289021	2.98907889425894	0.168894451599324	0.812208141316051	0.955516368820518
Merged-chr3-88719171-4	chr3	88718658	88719658	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	2304.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	5.35434732244759	5.53533426287375	5.65962835623675	5.70460844334173	5.7362115555508	5.74722572350812	0.399513541748774	0.213576389828118	0.60667272880272
Merged-chr5-140388034-6	chr5	140387512	140388512	+	858.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	1296.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	5.6997110480998	5.72529093304346	5.88072221603322	5.91797847362479	5.74836417434324	5.38334664793881	-0.0955627530115628	0.775063752911705	0.944529134174156
Merged-chr1-190929122-2	chr1	190928622	190929622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357133, intron 1 of 8)	intron (NM_001357133, intron 1 of 8)	300.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	7.38386194449329	7.39096883487529	7.37187411495877	7.45108989260541	7.28052696821654	6.88748115673296	-0.215725920772943	0.4042181533483	0.779435115494192
Merged-chr4-142076046-4	chr4	142075476	142076476	+	947.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-8322.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	5.86382104339668	5.80738472774539	5.64161131291956	6.72586333800842	6.82806355006376	6.26158228206211	1.4330132853321	4.07271197121273e-06	0.000184878460284053
Merged-chr8-56064273-4	chr8	56063740	56064740	+	755.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080438, intron 5 of 9)	B4A|SINE|B4	123415.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	4.69260480137911	4.3467810041499	4.36017821929825	4.66569171639143	4.8119282746164	5.04604105413196	0.852064549854475	0.0518159720495226	0.290571734889923
Merged-chr4-53116501-1	chr4	53116001	53117001	+	548.0	f0_balb.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43394.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.50951581496835	6.75519223824371	7.39369500764608	7.69968540826478	7.79306733302737	7.55256887899427	0.62701859085016	0.0304958531082381	0.211159103389388
Merged-chr10-111412159-3	chr10	111411656	111412656	+	841.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61071.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	4.39019148140025	4.08846273043136	4.50231059395396	4.45453237017752	4.42852382901179	4.48715166425237	0.323978507628982	0.476107795070223	0.82233881775831
Merged-chr15-103549657-4	chr15	103549146	103550146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11654.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	4.32145371878998	4.38478580355125	4.48970015031072	4.08295963233217	3.99179161542707	4.59330198302361	-0.426462244927741	0.38775525416043	0.767721672469137
Merged-chr9-7855578-2	chr9	7855078	7856078	+	845.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 5 of 8)	intron (NM_007464, intron 5 of 8)	17592.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	2.9799752859	2.80880044386393	3.07865632017336	3.09763684809412	2.92367139533061	2.97402928679908	0.204639814104582	0.76587534074184	0.942315053650124
Merged-chr5-107978828-3	chr5	107978258	107979258	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	8319.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	4.50554914682388	4.86745920536166	4.74038868936854	4.66878669170553	4.57176512220513	4.87878847527792	-0.0251963998697756	0.952354720113326	0.989072898453421
Merged-chr2-169928149-4	chr2	169927643	169928643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35044.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	6.69549017034528	6.54462438184241	6.42263040203684	6.96817681157877	7.07569246582199	6.87074321972865	0.64431302718144	0.0127887279684769	0.119561038706811
Merged-chr17-65769610-4	chr17	65769103	65770103	+	781.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	3149.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.48606002539074	5.6150766591492	5.19479497130582	5.83333050838538	5.89369369159617	5.7778703401602	0.701167895452431	0.0353626235418138	0.230889295328566
Merged-chr17-73035341-6	chr17	73034807	73035807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72678.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	8.3828018998796	8.58046451610402	8.17708215146212	8.374064060717	8.7361080898555	8.16320713058954	0.0824247132286725	0.745307506875203	0.936116619770028
Merged-chr10-69212216-2	chr10	69211716	69212716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-441.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	7.64801169735095	7.75841465496824	7.65703522146959	7.76647702048241	7.74110036163535	8.03929902840133	0.230257810999938	0.309879438077579	0.705462734304293
Merged-chr14-79537708-2	chr14	79537208	79538208	+	627.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	22034.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	3.97127452467745	3.97594905874916	3.73354297639657	3.69469155319859	3.96696420100746	4.00748310521074	-0.0258538256148806	0.961008097047844	0.990386809359123
Merged-chr1-54523900-4	chr1	54523411	54524411	+	992.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 12 of 26)	intron (NM_001163314, intron 12 of 26)	33773.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.14408261493714	2.84824352493493	3.10186645978238	3.21360764725407	2.97093021440687	3.17416662827508	0.373774564597214	0.583152265562232	0.873940666995104
Merged-chr16-23374367-2	chr16	23373867	23374867	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-54766.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	5.97551608375845	6.0893962454751	6.08901154848501	6.23899356199555	6.26706952500626	5.80791929989625	0.143187993791427	0.639900950297833	0.898255496259518
Merged-chr5-115533188-2	chr5	115532688	115533688	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	B3|SINE|B2	-26279.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	5.1472510120727	4.96801198037032	5.20684263444686	5.1865128510023	5.1582049236787	4.88175473123822	-0.0285997099402986	0.939081372892285	0.986604659958455
Merged-chr12-95747057-4	chr12	95746547	95747547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	54821.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	5.52189827760855	5.58813265846437	5.7711485450595	5.85409770303743	5.95413500531113	5.78217976560867	0.452227353730804	0.146850915570016	0.511240993378934
Merged-chr13-5420003-3	chr13	5419509	5420509	+	991.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	438083.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.36427292328144	3.47447341428361	3.42138172619681	3.2037693994423	2.95054261890329	3.59470909691198	-0.587029848053235	0.387085843205026	0.767450548016952
Merged-chr4-126086223-4	chr4	126085736	126086736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 7 of 9)	intron (NM_172701, intron 7 of 9)	-10417.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	3.64688769031165	3.49102657968947	4.28092910502665	3.79646527746415	4.04969280154557	4.34678116060728	0.682121076075407	0.264046587614948	0.661946214222778
Merged-chr7-38108471-2	chr7	38107955	38108955	+	951.5	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-965.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	6.81395099294127	6.72190397729812	6.55017705394189	6.64278261115907	6.61465277734866	6.11392631921236	-0.337765885930824	0.249844576287675	0.646908996257932
Merged-chr18-34930466-4	chr18	34929984	34930984	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	1519.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	7.26712687135822	7.1619736884211	6.82008629441769	7.36950104231587	7.67093110505317	7.34659627499675	0.549837240819678	0.0368814758466303	0.23666490647385
Merged-chr10-98704972-2	chr10	98704472	98705472	+	788.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209670.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.46203455445187	6.85623049480356	6.21083519569745	6.20316869679212	6.48769371870008	6.20593260974964	-0.382463928790515	0.224392928557735	0.619153519154732
Merged-chr3-152397156-4	chr3	152396719	152397719	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	535.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	6.9497961371741	6.94724674365575	6.48651900989544	7.10990402721543	6.6749757173515	6.77288878719892	0.0674123409577154	0.816730597525683	0.956754861188725
Merged-chr9-44407425-8	chr9	44406821	44407821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024266)	promoter-TSS (NM_024266)	227.0	NM_021789	60409.0	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	7.81659980505238	7.67575963916686	7.78927411469311	7.70012551156115	7.89623703770504	7.77835143424397	0.0522408292631245	0.811873743530786	0.955333185419231
Merged-chr13-22049876-3	chr13	22049402	22050402	+	810.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	6672.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	3.33855898085719	3.44967474022022	3.2550143209422	3.33640919251408	3.32749900564726	3.32728206980305	-0.0967610087100415	0.872725662681177	0.970272084673997
Merged-chr8-106148455-3	chr8	106147949	106148949	+	981.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1905.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	7.25490840186618	7.22848086500625	7.32073027508176	7.57526589133212	7.8355356068267	7.35545683043499	0.510481281616196	0.0389297139058928	0.244675854270076
Merged-chr13-104178774-4	chr13	104178276	104179276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	-63.0	NM_001361538	81003.0	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	5.14013484111334	5.14431274837974	5.424319891479	5.89372414502253	5.58208962054555	5.42749835430502	0.813300623976273	0.021764465503161	0.170830831580702
Merged-chr1-152682738-4	chr1	152682333	152683333	+	995.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-57616.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.90486234376522	5.95999057522608	5.43522389248442	5.6926189263284	5.46728851384981	5.33409556128824	-0.532407146977029	0.130339830702251	0.482560431744706
Merged-chr3-38484987-4	chr3	38484502	38485502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167883)	promoter-TSS (NM_001167883)	-186.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	5.78480101833965	5.68836343903517	5.33763379349511	5.95437725797146	5.01602548870953	5.26659140520136	-0.262326255944899	0.535770521761504	0.853668337370661
Merged-chr7-135584017-2	chr7	135583517	135584517	+	647.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-9464.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	2.52707295486788	2.22542038573296	2.47571999020249	2.19896192228268	2.12379660951742	2.42421424821078	-1.11160763803819	0.216918972896763	1
Merged-chr17-71286131-4	chr17	71285639	71286639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24872.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.30822817497769	7.25606417473861	7.13998348330015	6.75555817630147	6.67444053764905	6.35234168419685	-0.95685735125361	0.000265365286311229	0.00631413061006141
Merged-chr6-72107976-4	chr6	72107489	72108489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	10381.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	5.97288572169325	6.04625630909216	5.84999117110207	6.2482548287133	6.25304377984797	6.05802836414543	0.393481585375725	0.175534833375632	0.55548423273445
Merged-chr8-13677121-4	chr8	13676603	13677603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	CpG	484.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	8.2612803198315	8.34983002144784	8.09385892642472	8.11870471034038	8.37304883685187	8.11425966940626	-0.0430246844145652	0.84613664140237	0.963961283421434
Merged-chr12-52002431-2	chr12	52001931	52002931	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4076.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	5.43078610576365	5.46651762687041	5.3714914820481	6.07300553558874	6.29176523253302	5.98656371428123	1.26905755090724	5.18083274100034e-05	0.00163105081616783
Merged-chr19-56774560-4	chr19	56774070	56775070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39113.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	7.80553521416041	7.72626801541166	7.68013400373946	7.44892259292533	7.67488334249431	7.38713743984934	-0.322816828896425	0.160318516567407	0.532965919658045
Merged-chr18-62170542-2	chr18	62170042	62171042	+	944.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9439.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.49749099224287	5.56354817011856	5.31772293463797	5.48131125366337	5.26431541049333	5.31719862381122	-0.226137804357272	0.507210258009325	0.838904804247997
Merged-chr18-23893149-2	chr18	23892649	23893649	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001162942, exon 8 of 8)	3' UTR (NM_001162942, exon 8 of 8)	-61539.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.19522445893102	3.72393348380701	4.01226322020023	3.99453555266816	3.74661604974465	4.71245669023107	0.61724480358628	0.30201238867223	0.698730622456247
Merged-chr1-5508614-3	chr1	5508121	5509121	+	924.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-79872.0	NM_001204371	18387.0	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	3.47588991200146	3.59489953669508	3.75545659709496	3.54882142947024	3.34750374726103	3.72679850481619	-0.238712640852179	0.683009813201006	0.91523316791368
Merged-chr14-19747851-3	chr14	19747279	19748279	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3478.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	2.44492661320763	2.18418106857177	2.41880958068534	2.08575349745027	1.94567635283166	2.09778545585102	-2.63543148336162	0.0113312394135335	1
Merged-chr14-122014534-2	chr14	122014034	122015034	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20140.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.58154759248642	2.75734566993373	2.51631019349845	2.73714795064631	2.59199187670935	2.90374620519192	0.64112205267011	0.411587230173473	1
Merged-chr12-106030626-4	chr12	106030127	106031127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	20364.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.4424214733141	5.5225837170867	5.33982945723067	5.38779447968256	5.83857597938056	5.16321439023928	0.138858645262138	0.711887450812591	0.924889808252387
Merged-chr9-118683316-2	chr9	118682816	118683816	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-28376.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.18249858522095	3.19420935784809	3.52957437874376	3.45374646535093	3.13084195266037	3.54865456150495	0.306514575208544	0.634872768306516	0.89636184389676
Merged-chr9-108049183-4	chr9	108048684	108049684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357682)	promoter-TSS (NM_001357682)	-80.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	7.19161517020429	7.11479290825685	6.96256974655329	7.21267900047645	7.33513201998156	6.93382787223544	0.12514897642514	0.623137082115759	0.891286983395811
Merged-chr3-87929575-2	chr3	87929075	87930075	+	813.083374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	620.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	6.77770804330119	7.04973388797848	7.10710597135775	7.02607703074992	7.12886015581456	7.03730896477161	0.130791476450574	0.60185866469631	0.882147380255146
Merged-chr1-151269930-4	chr1	151269427	151270427	+	923.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74559.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	4.36102391066898	4.77145833497606	4.4820975132853	4.48415824263408	4.35803092969349	4.46347871132093	-0.307156091613859	0.490361451637959	0.830042606694236
Merged-chr6-54729948-4	chr6	54729446	54730446	+	962.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48322.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.0665583660683	2.04373712223562	2.01728779894128	2.28602511982011	2.32963060442272	2.4294105991722	2.3640231405597	0.0144882625894547	1
Merged-chr15-100131874-3	chr15	100131370	100132370	+	801.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-22526.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.736694205638	4.36364443933545	4.4456846743761	4.4015282658482	4.39574541985971	4.63573069993461	-0.136106619339925	0.76026497242514	0.940712904146702
Merged-chr17-88551677-4	chr17	88551166	88552166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21542.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	7.71585483825347	7.67384606651454	7.62780681821516	7.72164909061393	7.90429863701123	7.59839674087889	0.115865953390739	0.607993764034908	0.884838153491064
Merged-chr11-86226800-1	chr11	86226300	86227300	+	545.0	f1_balb.idr	exon (NM_027421, exon 17 of 25)	exon (NM_027421, exon 17 of 25)	25440.0	NR_130958	74038.0	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	2.43075835090518	2.42622643089452	2.58000016917068	2.35618967129808	2.3206927812424	2.59226757700761	-0.339285393560386	0.677830914777835	1
Merged-chr9-70261867-3	chr9	70261358	70262358	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	54508.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	4.58301229217617	4.76127518818653	4.67494984335698	4.28802368532836	3.74741142581648	4.13568919813938	-1.62623343398409	0.00106055732447444	0.0188499824756466
Merged-chr2-132575935-2	chr2	132575435	132576435	+	921.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 1 of 19)	intron (NM_001355651, intron 1 of 19)	2313.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	6.24249755973844	6.6016793798291	5.99225636405859	6.01170576433345	6.29193808584714	6.16888892311274	-0.249518561052548	0.431687654033159	0.797034816427545
Merged-chr13-5712028-2	chr13	5711528	5712528	+	568.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146064.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.48101826027919	3.50939586980259	3.56744893951147	3.72819306664273	3.75424846925744	3.9844272311823	1.04079655741292	0.0592216931640532	0.315192442420017
Merged-chr7-116476521-4	chr7	116476013	116477013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27856.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.31133596650609	5.21294948687259	5.48396430353323	5.08472994253174	5.2282297172576	5.37615699063063	-0.206451076765446	0.5607227560941	0.865261302076164
Merged-chr7-45716250-4	chr7	45715746	45716746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172561, intron 1 of 5)	intron (NM_001172561, intron 1 of 5)	-1039.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	7.48502208388442	7.53878211854405	7.58465642042518	7.58532513196204	8.08624586130603	7.68788988225984	0.40243235533348	0.105834417603282	0.434277059864578
Merged-chr17-12758158-4	chr17	12757675	12758675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	11531.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	4.15857002269862	3.75290291077537	3.69693755896098	4.1794180561562	3.76025843859107	3.9820321880639	0.270804708270132	0.626988132480399	0.892988961867358
Merged-chr3-107100946-4	chr3	107100480	107101480	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008417)	promoter-TSS (NM_008417)	-587.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.44648142485361	7.05539336819894	6.60729058862154	7.20029490784669	7.28362987933601	7.06130298614152	0.686880776593876	0.0171564628378754	0.145760557140357
Merged-chr2-25534389-2	chr2	25533889	25534889	+	834.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009422, intron 4 of 10)	intron (NM_009422, intron 4 of 10)	12551.0	NM_001290413	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	3.3257435083151	3.53859355077517	3.11357824686703	3.25802241377149	3.68324164081138	3.48758362657619	0.552847262891753	0.40273643241647	0.77821910936833
Merged-chr13-55019546-2	chr13	55019036	55020036	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	1283.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	6.4107205257499	6.52258378937486	6.40333402273115	7.18642400726571	7.44491585315714	6.94921972880225	1.19235790546996	9.90201966550674e-06	0.000396882106130773
Merged-chr15-96588814-4	chr15	96588333	96589333	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166456, intron 8 of 15)	intron (NM_001166456, intron 8 of 15)	53129.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.24067719139483	4.11681366639143	4.12146754835649	3.78131435121436	4.08672635353306	4.1433724553712	-0.431340634667948	0.386620422788932	0.767131316757601
Merged-chr15-5143802-6	chr15	5143307	5144307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355640)	promoter-TSS (NM_001355640)	-54.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	4.96083876675895	4.94981427385779	5.08959982106452	4.98252145725241	4.8773042491228	5.12046988942806	-0.0176795434204202	0.962337739727059	0.990833368152065
Merged-chr10-128673984-4	chr10	128673474	128674474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-56.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	6.54795201265181	6.36361560378213	6.35889498357528	6.47401005809534	6.56476619111824	6.47501421905701	0.126983847088669	0.634143236414815	0.896306748317281
Merged-chr18-54832011-5	chr18	54831479	54832479	+	717.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158201.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.91918380825676	4.2635469251499	4.30997917376025	4.54124023268793	4.6927568834122	4.42271036322135	1.02465869158118	0.0289418846321364	0.204136334362194
Merged-chr2-57297706-4	chr2	57297194	57298194	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 3 of 16)	intron (NM_010274, intron 3 of 16)	59312.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	3.08912526167455	2.91645535423728	3.25047843561168	3.17063966465909	3.14810919269154	3.15274618965117	0.311491701870614	0.635799276719657	0.896797678725484
Merged-chr2-52073366-2	chr2	52072866	52073866	+	927.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355414, intron 2 of 35)	CpG-8094	529.0	NM_175238	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	4.72396075780096	4.62693776374649	4.4453321545407	4.66238116442863	4.53911412261583	4.37580229245036	-0.183163088340034	0.670681817041604	0.910068549572303
Merged-chr1-155061176-2	chr1	155060676	155061676	+	895.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22088.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	2.45387700422709	2.28125872346437	2.37504073306762	2.53459253671189	2.39749094502244	2.57844361830198	0.813155006459488	0.320641283277276	1
Merged-chr7-30552398-4	chr7	30551879	30552879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183321)	promoter-TSS (NM_183321)	-107.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	6.07402667245873	6.40771888877573	6.24777118846842	6.84746049284572	7.08195953610395	7.25623254467661	1.2883243078111	4.66207220619758e-06	0.000208560055985639
Merged-chr2-3050242-4	chr2	3049751	3050751	+	766.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-63973.0	NM_001310434	269233.0	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	4.14563484120436	4.85317185212999	4.35948908827566	4.00146882576705	4.84623320757237	4.82778233029687	0.292690918191494	0.602471261184824	0.882349532183277
Merged-chr8-70695428-4	chr8	70694923	70695923	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2316.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	6.68404536009544	6.78334015851241	6.56262106003337	6.705326413266	6.76221438359317	6.65591566463488	0.0405943904757031	0.873886719144831	0.970492962848917
Merged-chr2-118540429-4	chr2	118539916	118540916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4171.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.9922920166811	6.87853684367793	6.48796448939324	7.6289092928302	7.89502010433689	7.24892356430012	1.20935851650008	3.92556449063354e-05	0.00128976442383349
Merged-chr12-99902223-3	chr12	99901705	99902705	+	624.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	17690.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	7.2221236716051	7.46697693310743	7.03546858813903	7.2887531560542	7.44433872280374	7.03794813812727	0.022150739687048	0.93329843100269	0.985392902830318
Merged-chr9-13298999-4	chr9	13298506	13299506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52050.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	6.97051680958108	7.06496257882445	7.23676432910149	6.95186217842415	6.97898544207806	6.79224517928214	-0.264322562749673	0.288552162237484	0.685976066839707
Merged-chr11-90242029-4	chr11	90241559	90242559	+	801.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-7417.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.48242047840804	5.25199987573195	5.43111755755579	4.97896436450823	4.51781374388244	4.83104753441321	-1.29704493985475	0.0009720354013104	0.0176227608438822
Merged-chr17-5595612-2	chr17	5595112	5596112	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	B4A|SINE|B4	103012.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.19879938898601	4.21495696451254	4.31954953815864	4.00092414539967	4.03824575244112	4.30128038779356	-0.366168405251301	0.44077965693304	0.801967806487315
Merged-chr9-94615403-4	chr9	94614822	94615822	+	733.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-54570.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	4.17382721925832	4.46497013549812	4.21470744801397	4.32971253966789	4.43508849564833	4.08567432765268	0.0146883422431266	0.975420610731361	0.994471514418299
Merged-chr2-165317571-4	chr2	165317069	165318069	+	934.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1218.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	8.2512787388097	8.42817744375336	8.058934813497	8.02494902933141	8.30705527555791	7.56258145430343	-0.347456512860802	0.20433114845139	0.594870235483128
Merged-chr19-31082784-4	chr19	31082265	31083265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031249)	promoter-TSS (NM_031249)	-76.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	6.190493944231	6.42447226718572	6.37706882498316	6.34716588988059	6.39066642820741	5.98498345915926	-0.111837070931809	0.704197917744571	0.9223772679418
Merged-chr2-84653556-3	chr2	84653058	84654058	+	801.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355064, intron 1 of 18)	B2_Mm2|SINE|B2	-2818.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.04167231304326	2.86074906632739	3.30703177413241	3.26422994152122	3.40230370277532	3.26737888054443	1.02509655362166	0.129029610106389	0.480371176632321
Merged-chr7-133635746-4	chr7	133635248	133636248	+	927.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1927.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	2.98192623592489	3.09855216047298	2.73031398052742	3.09270311075635	2.93091722424374	3.29113457940568	0.713620047301047	0.333554333062846	0.724468518545896
Merged-chr11-98961160-4	chr11	98960688	98961688	+	938.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	717.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.89959691720384	6.82008795598021	6.88759084462164	7.02413151368388	6.92155866381635	6.98746258130096	0.166303761855742	0.490738373083547	0.830165664658055
Merged-chr4-107921514-3	chr4	107920982	107921982	+	888.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	2107.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	5.04263559826046	4.98316313041975	4.27958109106667	4.6563124468558	4.68859432578361	4.45247519294427	-0.495714109874395	0.297691379966502	0.694429857818433
Merged-chr4-62513766-2	chr4	62513266	62514266	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276446, intron 2 of 11)	intron (NM_001276446, intron 2 of 11)	6143.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	1.82456110042142	1.75930114950141	1.98547577200631	1.60353926056865	1.69523130416207	1.79430675577201	-1.51094842946924	0.161471203502138	1
Merged-chr10-126980531-2	chr10	126980031	126981031	+	663.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	1814.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	4.6466193055131	4.40533208646834	4.94482987365918	4.39461993992328	4.26058017942672	4.58343356666517	-0.650422234687811	0.15496281552134	0.524301466022838
Merged-chr2-32606415-2	chr2	32605915	32606915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	-570.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	4.03000818607241	3.83924919078946	4.14025836454536	4.10386394771397	3.79737785349713	3.97481311061679	-0.127107159479705	0.804321635240847	0.953645244705356
Merged-chr2-153234944-3	chr2	153234440	153235440	+	925.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 2 of 2)	Charlie15a|DNA|hAT-Charlie	6418.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	4.47267613139835	4.42840457479558	4.90676017730862	4.90170203201049	4.8639990014392	4.54715152676253	0.420915276979358	0.338101744553387	0.728000347830431
Merged-chr4-55650390-4	chr4	55649948	55650948	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117973.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.59122394464491	5.6312253075674	5.80665785487169	5.34665497908075	5.34260006139986	5.4789550439672	-0.550637868425719	0.0929319912602366	0.406192421536049
Merged-chr6-38804321-2	chr6	38803821	38804821	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 2 of 14)	MTD|LTR|ERVL-MaLR	32990.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	4.01276931468754	3.82503690059629	3.98135936322988	3.50714164139455	3.52936254282884	4.04914426759651	-0.744418030353896	0.193688172142334	0.5810016705228
Merged-chr14-19823928-4	chr14	19823442	19824442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026528)	promoter-TSS (NM_026528)	-119.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	7.60371882987383	7.99040226539119	7.60974454357953	8.00701356305131	8.02402186381793	7.71354032946372	0.249344849595993	0.313181467930008	0.707835513355939
Merged-chr17-30005740-4	chr17	30005214	30006214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	675.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	8.38416206705933	8.10964532094172	8.05745478513048	8.6329551916577	8.35026014814055	8.32716413561506	0.349545304295829	0.128697308438384	0.479799601167289
Merged-chr4-32569405-2	chr4	32568904	32569904	+	988.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	2258.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	7.73962960139693	7.88181103339634	7.90580416284529	7.56539785062312	7.66574991596655	7.61574013727878	-0.325218937368517	0.136192172614033	0.493146752362964
Merged-chr19-5490031-2	chr19	5489531	5490531	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-424.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	5.5704903306355	5.79154441581772	6.09714352591596	6.23083640649368	6.7855708325038	6.39615871537179	1.13802435264636	0.000563963795372537	0.0115439851132492
Merged-chr10-45049898-2	chr10	45049398	45050398	+	675.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17316.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	2.44769034931231	2.48418271417219	2.79437778943357	2.50087280149314	2.46915157317016	2.69089404038671	-0.146381081669423	0.854681904517032	1
Merged-chr15-99031512-4	chr15	99030982	99031982	+	857.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	PB1D9|SINE|Alu	1591.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.70944915858037	6.58836325498143	6.33495968709389	6.64244318164687	6.68546890586872	6.33351414834424	0.0164657975577321	0.953706011259495	0.989446911725587
Merged-chr8-39635711-1	chr8	39635211	39636211	+	627.0	f1_balb.idr	intron (NM_001113326, intron 1 of 9)	(CCCCCT)n|Simple_repeat|Simple_repeat	6967.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.43662617324932	5.29741414943388	5.61636888258796	5.34098929021671	5.53060636126644	5.39716687000456	-0.031442697875161	0.926636937353538	0.983551822187064
Merged-chr2-129627071-1	chr2	129626571	129627571	+	1000.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	31609.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.48799074558399	3.52985117969047	3.58559809198593	3.60542572237654	3.38159097429237	3.70654482344825	0.108998729802127	0.849547242867969	0.964686793473289
Merged-chr2-164764444-2	chr2	164763945	164764945	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133763, intron 10 of 12)	L1Md_F2|LINE|L1	-5484.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	2.94297078809821	2.74067062765572	3.19656789260431	2.84677787038281	2.91184957330939	2.93411636404867	-0.333137010038847	0.643890623475699	0.899990653857957
Merged-chr5-18036431-4	chr5	18035931	18036931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73861.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	5.44834111359468	5.8202009344796	5.64926521922815	5.19695950146504	5.29655621121441	5.02839050446744	-0.910818260732242	0.010964619294018	0.107195869136018
Merged-chr14-33447294-4	chr14	33446786	33447786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016700)	promoter-TSS (NM_016700)	-128.0	NM_016700	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	6.97729512663306	6.70599771886356	6.13555263962844	6.78998199849502	6.37554565763624	6.28826048345884	-0.248448914886293	0.465549590639692	0.81709064392726
Merged-chr4-138028126-1	chr4	138027626	138028626	+	560.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	30301.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.37527299816986	3.10702005519997	3.290316041587	2.97981715480992	2.71869685757139	3.13723036134545	-1.44048383500581	0.0466831685240447	0.273397853419545
Merged-chr8-125053640-4	chr8	125053153	125054153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-542.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.31131752072915	6.3159790116578	6.23209013494794	6.44271937021829	6.59740953439547	6.22894373540293	0.25184995000763	0.368552163227323	0.753494886798671
Merged-chr1-91099072-4	chr1	91098575	91099575	+	947.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	45631.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.07354742287167	3.08643743384182	3.5508572655943	3.093745061376	3.24103516305259	3.0819908323094	-0.432343522943405	0.524666324164517	0.848752537154544
Merged-chr11-100525132-4	chr11	100524609	100525609	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	2891.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	4.04008876657671	3.63606810891083	3.86937496324392	4.05432049433404	3.63322625203538	3.93912271457583	0.0734649489165946	0.894721971783631	0.975576532925631
Merged-chr4-9644319-2	chr4	9643819	9644819	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	-602.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.86807811929041	6.03982092865043	5.78300590915612	6.63639517359236	6.60528267165509	6.05305451492108	0.940768526820845	0.00303622654754854	0.0424816442859289
Merged-chr2-59339845-4	chr2	59339228	59340228	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46954.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.68739485316932	6.86569331526275	6.43795194666764	5.93136816573922	6.03653752425898	5.85279971285883	-1.21403970704607	3.36395292467764e-05	0.00113414827778192
Merged-chr8-84236191-4	chr8	84235700	84236700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	842.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	7.18478825051461	6.76538455378644	6.61560886346477	6.84741583742895	6.75804659063608	6.78997467029682	-0.139279254175797	0.619866198073255	0.889979882381751
Merged-chr17-84354222-4	chr17	84353714	84354714	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	L1M4c|LINE|L1	111994.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.28849227726904	5.2910538948417	5.17446661717627	5.21277019968202	5.28219611086169	5.33496187972656	0.0367409174343887	0.915092058823216	0.980959026698783
Merged-chr10-41868159-4	chr10	41867638	41868638	+	878.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-19301.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	4.60637506055532	4.43698038135848	5.05110579398945	4.56167359367134	4.67945076610327	4.66403220794398	-0.17501202420321	0.693271576583836	0.918870025715412
Merged-chr13-41487254-6	chr13	41486725	41487725	+	917.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001111324, exon 1 of 8)	5' UTR (NM_001111324, exon 1 of 8)	135.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	6.67248586284582	6.99377619599469	6.84647974623773	6.90900882178689	6.8473116503513	6.84596592178899	0.0341352115460826	0.893663056064411	0.975265071347118
Merged-chr7-79696733-4	chr7	79696250	79697250	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029835, exon 22 of 22)	exon (NM_029835, exon 22 of 22)	17436.0	NM_010626	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	4.29889743040576	3.94137331176755	4.16432582549035	4.04938281303539	4.17397413089367	4.23220704667686	0.0274511613433573	0.955028616482097	0.989683851514547
Merged-chr17-57293009-2	chr17	57292509	57293509	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	MLT1F1|LTR|ERVL-MaLR	13909.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	3.80332140678393	3.877640007243	3.78240338759145	3.59245882055798	3.88629158750739	3.52198929582943	-0.43873121030455	0.434755724815036	0.798632090721892
Merged-chr3-135439354-4	chr3	135438854	135439854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	228.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	8.7090471182166	8.50801996582245	8.35666529762063	8.65605618923124	8.36808538504753	8.37613872088659	-0.0858928812617292	0.703728836182711	0.922212284449028
Merged-chr6-120837329-2	chr6	120836829	120837829	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	1099.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	3.70688410234882	3.63786859362947	3.36541574261125	3.86441323879382	3.69393145330177	3.56007070595512	0.438715189417397	0.452158005930769	0.809286173636239
Merged-chr19-41344448-2	chr19	41343948	41344948	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	40622.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	7.67691833924799	7.72047735603757	7.61684851343267	7.75483222441958	7.9300020977463	7.68282196562085	0.180052001782574	0.417576977046375	0.788153455961773
Merged-chr11-78983877-2	chr11	78983377	78984377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1047.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	7.55667271705123	8.08546247062736	7.51395258077469	7.81217059095572	8.06943018441574	7.57994578965872	0.128606499536216	0.645766855612789	0.900728665188651
Merged-chr2-117962882-5	chr2	117962345	117963345	+	893.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	MTD|LTR|ERVL-MaLR	140917.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	6.83545703375914	7.12519245389815	7.24245862590666	7.04513543656508	7.19509372826064	7.01682439466281	0.0295443913629518	0.90836551083528	0.979259582109985
Merged-chr3-104511226-2	chr3	104510773	104511773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 1 of 17)	intron (NM_001025067, intron 1 of 17)	645.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	6.65047915105161	6.83070594038075	6.70894571138786	6.79956890331614	6.79746557102557	6.82899256059395	0.114530871267555	0.646976082076728	0.901147217868585
Merged-chr4-141728617-1	chr4	141728117	141729117	+	626.0	f1_balb.idr	Intergenic	B3|SINE|B2	-5198.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	3.01913909516693	2.88454349150159	2.88304879794182	2.70559525160778	2.66681222515281	2.70541699378078	-1.27672351805958	0.0821884970065311	0.379123019025808
Merged-chr15-98092816-2	chr15	98092316	98093316	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163488, intron 1 of 22)	CpG	227.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	6.48225976805302	6.64990974223877	6.50769534410242	6.93408597925902	6.63935492044522	6.92657784022227	0.444399515686359	0.0953969664986056	0.411711140478007
Merged-chr1-124073254-4	chr1	124072783	124073783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27724.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	6.25600386043626	6.08289387382997	6.26827136281877	6.29149856084621	6.29191944783028	6.59380409517505	0.314895656929408	0.269750241654805	0.66686579973798
Merged-chr5-122707586-4	chr5	122707107	122708107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	63.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	9.35733966794511	9.45879445376737	8.77453811372315	8.99480750326866	9.40357902612447	8.71604501950332	-0.21710519723006	0.443621292609312	0.803884349333946
Merged-chr5-64716757-4	chr5	64716234	64717234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86789.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.15600232820815	4.81593333348685	5.07561563526097	4.96953862069217	4.85229220550875	4.9672588071047	-0.205746208360786	0.59301641979794	0.878398361724896
Merged-chr2-129572766-4	chr2	129572266	129573266	+	984.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20073.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.282615214419	5.01823076145017	4.94505398451915	5.92116991295583	5.98004381318701	5.28049391145061	1.30094327685289	0.000804309718416211	0.0152354649035628
Merged-chr11-115930375-1	chr11	115929875	115930875	+	554.0	f1_balb.idr	intron (NM_130454, intron 2 of 18)	AT_rich|Low_complexity|Low_complexity	3117.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	4.6486741169677	4.50333835647885	4.25470726829008	4.45580808492717	4.55294491031385	4.50705904723261	0.0449903447261726	0.918772598455887	0.981830247255695
Merged-chr6-83029936-3	chr6	83029452	83030452	+	788.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291799)	TTS (NM_001291799)	3519.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	4.95973650731552	5.00251240489035	5.17903022739124	4.53846980888673	4.61208150987372	4.41450995362423	-1.17457910148731	0.00417120570521673	0.0536110108618588
Merged-chr11-69395442-2	chr11	69394944	69395944	+	825.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-98.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	8.40345965421383	8.39113517417365	7.94643075806821	8.25037639433951	8.39800715996737	7.94575824809354	-0.0734032202816789	0.771118851216882	0.943576844936255
Merged-chr9-13551985-2	chr9	13551485	13552485	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAG)n|Simple_repeat|Simple_repeat	-68004.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.57583855466311	3.01401223734903	3.30376683113934	3.10080653715403	3.22344451773654	3.31930820796946	-0.421799003701558	0.531685270770922	0.851792887243639
Merged-chr4-134761912-4	chr4	134761430	134762430	+	876.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6074.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	6.50421611130151	6.91084246599365	6.55149532617477	6.45369300732254	6.94923880642231	6.36390235959621	-0.0693876728424346	0.824502573458724	0.958596193929081
Merged-chr14-47515240-4	chr14	47514754	47515754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	42693.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	6.27342026994736	6.50798452975829	6.39957030086422	6.73177586573197	7.0097421789362	7.03159685748664	0.840823108528294	0.00175112227417025	0.0278865803232838
Merged-chr18-54992057-4	chr18	54991591	54992591	+	993.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	500.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.08990151304883	7.17163658185558	6.83422879683186	7.25244376667712	7.51606683665013	7.22215092139634	0.441984471493051	0.0828592202057236	0.380851239843001
Merged-chr9-64734879-3	chr9	64734427	64735427	+	821.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	2829.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.98766154281531	5.80028282582925	5.55435322283128	5.42166781764503	5.05093673300409	5.3088391504627	-1.02714541384502	0.00351628137787167	0.0473281690213435
Merged-chr7-81523459-4	chr7	81522962	81523962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045299)	promoter-TSS (NR_045299)	-88.0	NR_045299	100504421.0	Mm.217071	NR_045299	ENSMUSG00000097277	2900076A07Rik	WI1-1616M8.2	RIKEN cDNA 2900076A07 gene	ncRNA	6.96387188212196	7.11022750520178	7.08463865164235	7.34016705204579	7.36514562358867	7.1295192759936	0.3546154749387	0.138969663956307	0.497976284884405
Merged-chr9-96119295-4	chr9	96118810	96119810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177352)	promoter-TSS (NM_177352)	-119.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	5.61242263402051	5.99381586848187	5.75224034647655	5.44259635824428	5.35081854171773	5.485892573354	-0.705745101027005	0.0336331650083429	0.22408106285645
Merged-chr5-3803791-2	chr5	3803291	3804291	+	612.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289528)	promoter-TSS (NM_001289528)	610.0	NR_033173	79264.0	Mm.32368	NM_030675	ENSMUSG00000000600	Krit1	2010007K12Rik|A630036P20Rik|AA432855|AI450393|AI643869|BB155247|BB235701|Ccm1	KRIT1, ankyrin repeat containing	protein-coding	5.44755755775549	5.54786681772921	5.83030796852699	5.54466661782187	5.61845663270733	5.47078748312419	-0.104962957325146	0.753097364052617	0.938549578325581
Merged-chr16-38763701-4	chr16	38763221	38764221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019804, intron 5 of 6)	intron (NM_019804, intron 5 of 6)	21462.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	6.90534937652452	6.73005442721939	6.86527869122024	6.95690327901914	7.02593823572031	7.15956527779942	0.325962899628683	0.186845607877901	0.571645847815464
Merged-chr2-112270227-2	chr2	112269727	112270727	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	B4A|SINE|B4	3913.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	3.91556292166133	3.55310953529666	3.90542891436606	4.02769703093549	3.91061157464302	4.15948235314006	0.716488776786728	0.179210379341117	0.56073918866678
Merged-chr1-177443236-5	chr1	177442762	177443762	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355101, exon 2 of 4)	5' UTR (NM_001355101, exon 2 of 4)	911.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	4.115948255415	3.90513882730499	4.00192359408737	4.11663575299055	3.97708346410541	4.16484150478462	0.210399941969129	0.66786328769102	0.908907404460966
Merged-chr14-75164051-4	chr14	75163571	75164571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	27646.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	8.1692052971716	8.45897617853931	8.11140442634711	8.02173777613357	8.52373466505614	8.10359487650593	-0.023208456909974	0.926632499159941	0.983551822187064
Merged-chr2-71924244-3	chr2	71923734	71924734	+	896.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	49330.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	3.71274946993623	3.72506677340051	3.92859881530978	5.01564822373068	5.18854014673553	4.5987960279425	3.32510216666528	1.8657732654261e-10	2.33806117273456e-08
Merged-chr18-44829481-2	chr18	44828981	44829981	+	755.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163013, intron 1 of 29)	intron (NM_001163013, intron 1 of 29)	816.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	4.61333439876682	4.76256296966325	4.54056680415367	4.71082446929393	4.62601102616033	4.60795743906343	0.00216619512196316	0.99579303889718	0.998961028701257
Merged-chr11-90250487-3	chr11	90249996	90250996	+	919.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	1020.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.45914650841824	5.84601641421498	5.60698591877703	5.04973576937841	4.79831262072054	4.85066806103788	-1.5160372664688	4.22909285112952e-05	0.00137405059725414
Merged-chr1-163930575-3	chr1	163930073	163931073	+	959.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286003, intron 1 of 13)	intron (NM_001286003, intron 1 of 13)	808.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	7.22872448096811	7.573733383526	6.56579980490686	7.03552823702545	6.99531020180742	6.75137797440993	-0.397517751510292	0.223657503750606	0.618437467582505
Merged-chr15-64101239-2	chr15	64100739	64101739	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40791.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.17037075135921	6.03074884993971	6.09063503366839	5.63354513144999	5.46462977523561	5.72714002104352	-0.888862539649517	0.0036952108477526	0.0490306337457819
Merged-chr2-91097260-3	chr2	91096781	91097781	+	819.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	603.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	8.36948698399092	8.85050440861481	8.49807458859848	8.69379089439635	8.80126162959579	8.4642367125928	0.0991465223708051	0.678651761927737	0.913520275119034
Merged-chr11-120571923-2	chr11	120571423	120572423	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011032, intron 1 of 10)	intron (NM_011032, intron 1 of 10)	1330.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	6.95142812482953	6.87808551278658	6.79340419079178	5.84041060087037	5.64987731796284	5.98237356208962	-1.76321197388646	3.24532949977776e-10	3.87428087543052e-08
Merged-chr2-167495425-2	chr2	167494925	167495925	+	727.727295	f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	intron (NM_030743, intron 1 of 7)	-2551.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	4.98862581079251	4.90028281292119	5.09926251930102	4.88828080089571	4.8033138231978	5.06436798470981	-0.173000920152911	0.649871558166404	0.902384897735634
Merged-chr6-29522990-4	chr6	29522483	29523483	+	984.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	8.45198204637365	8.44480946204382	8.31767326034751	8.30674676618629	8.82509012030902	8.32384041667073	0.150763780595117	0.534379316441602	0.853068627162717
Merged-chr7-88296282-2	chr7	88295782	88296782	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	18197.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.56814242147655	4.69111939790532	4.94616956242687	4.83724362894903	4.9461724697394	5.20189557821241	0.586874318453484	0.148153981607031	0.513628453046031
Merged-chr14-54381312-2	chr14	54380862	54381862	+	919.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	20521.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	5.59671442845371	5.65431981031086	5.88109648776069	4.92896777382879	4.76516001763543	4.63711253837419	-1.88505435565993	6.14063740260227e-07	3.52379418617744e-05
Merged-chr2-152693418-3	chr2	152692904	152693904	+	926.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	6256.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	3.45677675715067	3.66860668699857	3.44727601731678	3.76600611395254	3.6019515957707	3.57643725660599	0.413729012806632	0.468396668457626	0.818582499979463
Merged-chr6-89643189-2	chr6	89642689	89643689	+	964.125	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-799.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	3.62833956475034	3.48389846004841	3.70116147113067	3.59066552026888	3.4833816674694	3.91315594282507	0.21322489805609	0.710520964408929	0.924358113435436
Merged-chr19-6340738-3	chr19	6340242	6341242	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-418.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	6.77204679253547	6.76029528213208	6.97162034797618	6.900917459142	7.38233974460461	6.78099930419017	0.350427996941165	0.220418150664141	0.614897692710022
Merged-chr15-100084142-4	chr15	100083631	100084631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	45467.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	8.12209311634483	8.02663402056312	7.72643338021033	8.06179220631021	8.2723550689872	7.85331168396917	0.149132899573185	0.541876517226163	0.85701585686177
Merged-chr2-158129057-2	chr2	158128557	158129557	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 7 of 12)	intron (NM_009373, intron 7 of 12)	17335.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	3.16202575045482	3.22665801768821	3.56955483693581	3.43550275125595	2.93256527066881	3.26907285302816	-0.395619173280248	0.564205478740575	0.866217862151886
Merged-chr16-17132932-2	chr16	17132432	17133432	+	883.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-549.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	5.12576094609348	4.99073940602797	4.83637841883758	4.83638835887429	4.82242295677628	4.56677230691526	-0.532334825189109	0.183224803326495	0.566231458237241
Merged-chr18-65490043-3	chr18	65489568	65490568	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59071.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	3.71526756202445	3.24482638797157	3.32900153534583	3.24479676224279	2.80149979493693	2.96755922573498	-1.86517422755381	0.0121002158563817	0.11498798092483
Merged-chr11-54693917-3	chr11	54693411	54694411	+	967.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252496, intron 28 of 28)	intron (NM_001252496, intron 28 of 28)	93792.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	2.32517367049228	2.21815885647856	2.64540650321019	2.24593578119788	2.14859831184468	2.35230143238853	-1.03342029961907	0.244787124178467	1
Merged-chr13-48962772-4	chr13	48962280	48963280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5048.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	7.09434902950602	7.01854695908459	6.81747676149968	7.15948989974753	7.25936617670737	6.96553029749514	0.230770836324206	0.360069389540684	0.746329557714757
Merged-chr17-6270483-3	chr17	6269985	6270985	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033178)	promoter-TSS (NM_001033178)	15.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	3.54218594431069	3.48605945789949	3.89688155103996	6.00139372051152	5.95739197537385	5.12894779802926	9.04028153052875	2.14803925368427e-13	4.66668538434884e-11
Merged-chr8-116581474-4	chr8	116580975	116581975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	76460.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.6907024390177	6.73799337614269	6.57308651040965	7.47111298824879	7.37080927239393	6.85206720042656	0.907355138534708	0.00114439707413905	0.0200015385199718
Merged-chr7-141480025-2	chr7	141479525	141480525	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 1 of 7)	B1_Mm|SINE|Alu	3645.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	2.75081095254476	2.54229705639526	2.811146046402	2.93578886746982	2.53475535998201	2.76179327968225	0.257343098903385	0.740567052340517	0.934580867046263
Merged-chr18-80413418-4	chr18	80412920	80413920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-49166.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	5.75496345553642	5.47934807404697	5.09308457749269	5.01440162522855	5.15448433678868	4.96884442546003	-0.857140246649399	0.0270017497991069	0.195640584203822
Merged-chr2-156421687-4	chr2	156421191	156422191	+	841.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013510, intron 1 of 21)	intron (NM_013510, intron 1 of 21)	782.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	4.24289167675953	4.13977659349544	4.58426301884151	4.44424886040713	4.33816319054466	3.97447116930638	-0.139404220739641	0.780233895437759	0.945966807104547
Merged-chr9-103347193-4	chr9	103346649	103347649	+	952.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 27 of 27)	RSINE1|SINE|B4	17830.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	5.09220371688009	5.03067777262569	4.87674141063798	5.07697167896372	5.21922481298947	5.48993533072563	0.528147877312807	0.159580781743832	0.531877190382303
Merged-chr18-46378765-4	chr18	46378266	46379266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66838.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	5.33963069600547	5.17590237561051	5.26904993890198	5.25262825136472	5.24911709068674	5.2690780609148	-0.0129466951546315	0.970073025997002	0.993347985887136
Merged-chr17-75558756-2	chr17	75558256	75559256	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-6810.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	3.57530491155897	3.30407598632191	4.06539696731445	3.46802723913828	3.63681148578958	3.77609473151688	-0.168518466180005	0.789280166093312	0.949162100536078
Merged-chr9-116088962-3	chr9	116088462	116089462	+	820.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	86401.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.00210004012813	3.71404884595016	4.5313912512661	3.85961315426684	4.01894420705401	4.41156536387063	-0.0249352319305088	0.965630868301466	0.992002238254092
Merged-chr4-126141192-3	chr4	126140737	126141737	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001145827)	TTS (NM_001145827)	-6766.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	4.25290094885459	4.33541192716984	4.846533818369	4.29924471670406	4.21008482822134	4.34886529499919	-0.540639422156222	0.259994266260391	0.657579648868986
Merged-chr7-31041811-4	chr7	31041291	31042291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	48.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	6.40617396991251	6.63316684497339	6.43267639612771	6.33457530707856	6.29636284095259	6.14769478470769	-0.378561017543182	0.170418975087095	0.547778885896491
Merged-chr4-48593047-4	chr4	48592557	48593557	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7883.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	3.69654715614198	3.65888985870939	4.06267361455311	3.89844701169838	3.57962653072107	4.2947858169795	0.421403838347229	0.471807081645908	0.820338591808607
Merged-chr1-34468419-7	chr1	34467884	34468884	+	959.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 6 of 14)	intron (NM_011206, intron 6 of 14)	8638.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	6.11405460816732	5.87204115305512	5.68601381879309	5.67272404086447	6.13088675185889	5.9056035344895	0.0232537506961217	0.944198421307128	0.987591289221182
Merged-chr14-46884945-4	chr14	46884412	46885412	+	944.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028966, exon 2 of 12)	exon (NM_028966, exon 2 of 12)	1947.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.43509450547444	6.35396139732532	6.53435348413789	6.45662717443644	6.86644309838519	6.57638779409671	0.345756626989208	0.215291631490012	0.608656770624521
Merged-chr18-67435608-4	chr18	67435114	67436114	+	854.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 5 of 16)	intron (NM_027130, intron 5 of 16)	13522.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	3.82783626615774	3.82625747489471	3.96002825110519	3.78281289412909	3.65043631861097	4.07324786334503	-0.103429187822131	0.846362021117843	0.964013675730955
Merged-chr3-115789295-4	chr3	115788802	115789802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74247.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.01103380156415	3.87005608245196	3.78938484796442	3.79821693089596	3.65546780148819	3.80764263652434	-0.473806212539066	0.367253781093475	0.75215252085325
Merged-chr3-109478769-3	chr3	109478252	109479252	+	922.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95255.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.42918600405129	5.26578922411683	5.2987103007692	5.23788695300473	5.19899423069021	5.45120744976095	-0.0871940877601354	0.801855355776648	0.953086016975963
Merged-chr2-76049831-3	chr2	76049349	76050349	+	817.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081033, intron 14 of 19)	intron (NM_001081033, intron 14 of 19)	-67882.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	2.715714547655	2.87809369632847	2.98675973435207	2.79202455724175	2.81558376992491	2.63094693765374	-0.559381172726533	0.452844669627587	0.809457484278845
Merged-chr12-75833640-4	chr12	75833125	75834125	+	961.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	15307.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	3.27975581087728	3.19450547972841	3.22027052653703	3.30585419122286	3.12956051291994	3.65987982221735	0.565493337043653	0.381610223378778	0.763233731504131
Merged-chr12-98811765-2	chr12	98811265	98812265	+	682.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 31 of 43)	intron (NM_001081191, intron 31 of 43)	40743.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	2.81679522681527	2.68117317026391	2.78401975186165	2.65617517970286	2.54555691145796	2.67141291921094	-0.770973872187975	0.303609858367117	1
Merged-chr16-16042267-4	chr16	16041747	16042747	+	944.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 6 of 18)	Lx2|LINE|L1	104604.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	2.66580746947904	2.5271874316232	2.81289205432486	2.57880969303329	2.65248073968964	2.70572263878082	-0.127734067981055	0.866466357152633	1
Merged-chr18-80277067-1	chr18	80276567	80277567	+	831.5	f0_balb.idr	intron (NM_025861, intron 4 of 5)	PB1D10|SINE|Alu	20761.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	3.37217176183689	3.28015300606863	3.28393252707338	3.02615024207447	2.80106000519207	3.61249018116584	-0.463522923223926	0.536877900760873	0.854215768737235
Merged-chr2-4487634-3	chr2	4487132	4488132	+	865.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-72122.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.7357174983509	2.62838414023222	3.12235135341908	2.90359198123092	2.88703986209278	2.72207562067898	0.00533850603666043	0.994415833197181	0.998918571480046
Merged-chr18-24120709-2	chr18	24120209	24121209	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172625, intron 1 of 4)	MTE-int|LTR|ERVL-MaLR	1110.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	5.66548516230904	5.65939812443235	5.7224334116326	5.47840850265943	5.6354943255298	5.41768310100231	-0.293191578875103	0.362408487868881	0.747861848583747
Merged-chr10-42258562-2	chr10	42258062	42259062	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	18180.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	2.91916838366539	2.81218045129987	2.93005729107547	2.8549367609286	3.05425106003178	3.06105022592081	0.513123093812364	0.456727148959035	0.811822155193116
Merged-chr11-99165108-4	chr11	99164593	99165593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10016.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.89001586099642	6.47979700897622	6.72547057312871	7.08385003215961	7.27099190808822	6.92101157608389	0.612600499399616	0.0241720394813471	0.182945885134066
Merged-chr9-89267968-6	chr9	89267601	89268601	+	991.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56717.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	7.27851241831772	7.26049667095509	7.26833778899388	6.88291297265236	6.97763268361877	6.67620687633969	-0.616784645841471	0.0121404868298536	0.115160240325862
Merged-chr19-56822290-4	chr19	56821760	56822760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3949.0	NM_001002238	83561.0	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	7.78363918318319	7.99233476081424	7.40500688120132	7.69194285892697	7.49038714726106	7.29926855911515	-0.362323861954687	0.174302172074313	0.553423314145592
Merged-chr5-136171687-4	chr5	136171192	136172192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1036.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	8.10960566327407	8.38545216383315	7.96554377354529	8.06415188807993	8.32306865380298	7.95890693002903	-0.0567871677773304	0.814439027480571	0.956308458435924
Merged-chr5-96206902-4	chr5	96206405	96207405	+	819.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3210.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	3.88043529301164	4.16261021839874	4.04730566345606	3.74684985408323	3.72494344517239	4.28792235053336	-0.296869382998508	0.588141381182846	0.876194081704873
Merged-chr8-46432470-3	chr8	46431974	46432974	+	882.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38563.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	3.71654568525301	3.59845982970062	3.48680985863296	4.17973639354329	3.9449914615837	3.89663100101113	1.30188852862284	0.0177123656778927	0.149065492396692
Merged-chr5-51552684-2	chr5	51552184	51553184	+	975.916626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132764, intron 1 of 12)	intron (NR_132764, intron 1 of 12)	1237.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	3.22260469846172	3.22682585097073	3.0323003274502	3.42132080602031	3.44110917533474	3.46223648398087	1.08936295530829	0.0841475525032942	0.383783684975559
Merged-chr19-4332901-4	chr19	4332398	4333398	+	988.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-26676.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.00240320149523	5.86672776738183	5.83029734635152	6.09456666295383	5.94946506123451	6.10224438983157	0.242794768602925	0.410821477576086	0.783635895772505
Merged-chr7-141437653-4	chr7	141437152	141438152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360523)	TTS (NM_001360523)	222.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	4.85770856815166	4.79478515534702	5.1752254458626	5.43183361802586	5.09839181399493	4.84660000822522	0.446696508642249	0.272167216447457	0.66953956602346
Merged-chr2-27728144-4	chr2	27727635	27728635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	17552.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.63768799615683	7.84704165399538	7.51805141012225	7.66771856650215	7.64340967420687	7.50312751908213	-0.102718221495907	0.658303950873018	0.904992195604343
Merged-chr8-124007713-4	chr8	124007226	124008226	+	863.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357315, intron 3 of 4)	RMER16|LTR|ERVK	13330.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	4.44456094019179	4.69896310975463	5.14568801459338	4.58525341492811	4.68690226973406	5.34713785550695	0.271007174351981	0.578095455761956	0.87232748170547
Merged-chr8-120738931-4	chr8	120738410	120739410	+	906.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301811, exon 1 of 9)	5' UTR (NM_001301811, exon 1 of 9)	271.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.19070736009306	6.17761480424733	6.61192115595837	6.81837406541877	6.69908746856045	6.40749012868215	0.530360041687185	0.0737129719328363	0.356786049013289
Merged-chr14-13130894-3	chr14	13130392	13131392	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3a|LINE|L1	153746.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	2.58684520067468	2.80192675876509	2.82284010118806	2.73809515758836	2.57626717008349	2.89533681175535	-0.0122118359279785	0.987114543678146	0.997161899445921
Merged-chr6-8343459-2	chr6	8342959	8343959	+	747.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302354, intron 2 of 3)	MER91B|DNA|hAT-Tip100	84171.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	4.17912989889325	4.36284418333819	4.23596646619406	4.62894935542566	4.75088460024272	4.61381886694773	1.02308688433145	0.0187396610429825	0.154906588124825
Merged-chr1-43914730-4	chr1	43914223	43915223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19271.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	8.10911913362711	8.15323907549037	7.77993479990587	8.10326142257664	8.43891841388601	7.64722358757247	0.119558435449083	0.670389365756858	0.910029595108128
Merged-chr2-21186790-7	chr2	21186282	21187282	+	935.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	18583.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	6.08541290960578	5.99935955543924	5.80466517402242	5.79575047979566	6.06088168852971	6.10245042629021	0.0275356103640011	0.928360427139772	0.983802612059568
Merged-chr7-12422510-4	chr7	12422018	12423018	+	838.830383	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033820)	promoter-TSS (NM_001033820)	-27.0	NM_001033820	619331.0	Mm.361832	NM_001033820	ENSMUSG00000034071	Zfp551	9630004E07Rik|Znf551	zinc fingr protein 551	protein-coding	3.94031132828713	3.84244162823029	3.96032518836474	4.01487981690167	3.79984859238913	4.37585114327985	0.476500025760487	0.367101180408285	0.752113401392775
Merged-chr2-174471449-2	chr2	174470949	174471949	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025531, intron 1 of 5)	intron (NM_025531, intron 1 of 5)	1492.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	4.88523696796995	5.09493461783519	5.58761860413963	5.44431431758943	5.39157766272567	5.57183401648004	0.511499643949085	0.186484308836897	0.571044285492972
Merged-chr7-19491943-2	chr7	19491443	19492443	+	773.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	16388.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	3.34495121984021	3.33062314809169	3.44440999230629	3.03617850806344	3.00532733101383	3.24375102318744	-1.20175931461754	0.0624811232887451	0.324918663551563
Merged-chr11-118162499-2	chr11	118161999	118162999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33280.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.12143505063423	3.03764321037972	3.495716610641	3.24834890022862	2.79142742017736	3.3077533974179	-0.395333462840625	0.586432893458474	0.875542858146529
Merged-chr17-34887720-4	chr17	34887226	34888226	+	805.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS4|LTR|ERV1	-5626.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	3.38327927922679	3.44920804596644	3.53081923871548	3.76271975247609	3.70373576981872	3.90486215447891	1.18222663283236	0.0348468401980161	0.228958929184817
Merged-chr17-56023437-5	chr17	56022895	56023895	+	912.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13242.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	5.51592907758497	5.03991636039196	5.56802573493407	5.30641533225607	4.77357993617835	5.26089686323812	-0.529611597043956	0.195044089593131	0.582787221560878
Merged-chr17-6777476-2	chr17	6776976	6777976	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	5304.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	4.50980159856262	4.59484611695796	4.33683168465898	4.14094318930624	4.27415655485542	4.53200329802209	-0.448926925643265	0.325667174932484	0.718173282407033
Merged-chr3-144719256-4	chr3	144718733	144719733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1102.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	8.82098198809947	8.99184571622013	8.46392214095311	8.73617238013451	9.11284624822638	8.78109447538382	0.149154566540291	0.541676755244118	0.856879077002901
Merged-chr5-124111216-3	chr5	124110723	124111723	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1098.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	4.82879261445786	4.93518106781585	5.20516179608277	5.00716170540349	5.37614586175639	5.17311412598292	0.446964683792144	0.245192289908104	0.642381314494918
Merged-chr9-59728751-2	chr9	59728251	59729251	+	958.7000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	20987.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	7.46763596159533	7.16327369103801	7.13563471730887	7.70428340737129	7.76734895674234	7.26913811512301	0.496294930014718	0.0609171813510934	0.319760248823574
Merged-chr10-128035497-4	chr10	128034984	128035984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113199, exon 1 of 9)	5' UTR (NM_001113199, exon 1 of 9)	138.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	8.37436791063559	8.8208803662838	8.15983917004311	8.35232983671216	8.58922269079367	8.18063291560359	-0.137804747443784	0.602867806237397	0.882397657327329
Merged-chr19-59345199-4	chr19	59344626	59345626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033222, exon 1 of 5)	exon (NM_001033222, exon 1 of 5)	654.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	6.42241142286791	6.69179941147783	6.76513979633569	6.61940038186907	6.33459901427027	6.57132126113853	-0.1946281654806	0.48518405825477	0.827363359345484
Merged-chr1-154097108-2	chr1	154096608	154097608	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-104079.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.00169403848263	5.97416303080425	5.96234739498612	5.88738504209661	6.08234507762023	6.06850521282839	0.0628659546473964	0.829341036412495	0.960024094417547
Merged-chr15-97941519-4	chr15	97941025	97942025	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-22704.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	3.57928732595307	3.33832604752315	3.19283449271127	3.51075355445468	3.29329082369886	3.60696692696429	0.320372246998664	0.609820474642443	0.885315715493415
Merged-chr4-134702157-4	chr4	134701657	134702657	+	807.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	2133.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	3.47932470780502	3.38524940359494	3.21273194345673	3.11312680477803	2.8038069217738	3.28553755248494	-1.24929398500682	0.0776245178946686	0.36767694455397
Merged-chr11-31713340-4	chr11	31712835	31713835	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41473.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	6.84559079322181	7.16199420722943	6.95616049940764	6.65099934775445	6.8250260656229	6.66713659888991	-0.425969530446318	0.101184112088822	0.424204614205772
Merged-chr1-162740121-4	chr1	162739639	162740639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081290, intron 1 of 34)	CpG	417.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	8.50411676339065	9.09049725248522	8.71160463968741	8.50714171331931	8.87261045690169	8.82086520705835	-0.0705364749675489	0.778774064994873	0.945520893795831
Merged-chr8-122938733-3	chr8	122938236	122939236	+	905.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	90362.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.3767680540344	4.98572227495728	4.57533893697774	4.53041064631208	4.32443295459512	4.84867315611151	-1.02762153032163	0.0286834686039486	0.203071050420944
Merged-chr3-90249432-2	chr3	90248932	90249932	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013901, exon 3 of 4)	exon (NM_013901, exon 3 of 4)	1240.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	7.20266256596828	7.21699227598269	7.23640364089809	7.17847398840129	7.1598173823246	7.31632878359371	-0.00381113994485687	0.986854504310281	0.997112269218111
Merged-chr16-30023573-4	chr16	30023078	30024078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14911.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	4.30558098925951	4.39505084389604	4.3451797798638	4.60786222200732	4.72203508733821	4.95442116929267	1.00995389997351	0.0186706906561707	0.154540124622621
Merged-chr4-150239050-4	chr4	150238544	150239544	+	833.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1720.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	5.60201352235181	5.70552234675578	6.23209796712591	5.9830311804723	5.81665525316373	5.89393019380194	0.0626199109605752	0.853867800191528	0.965850084130104
Merged-chr7-55870488-4	chr7	55869955	55870955	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	B2_Mm2|SINE|B2	28384.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.37570163908833	4.50586763449209	4.48180098315241	4.77851314449728	4.42647017797111	4.74770086478413	0.483659491160279	0.264982593471498	0.662790696671811
Merged-chr7-145264404-3	chr7	145263936	145264936	+	945.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132643, intron 13 of 22)	LTR41B|LTR|ERVL	19575.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.24966445097802	2.43872885869747	2.46621009212716	2.29673529871188	2.11984155004529	2.34945176308521	-0.896673070958891	0.305270657422015	1
Merged-chr4-101172880-4	chr4	101172361	101173361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 10 of 24)	intron (NM_146145, intron 10 of 24)	92421.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.59938195363173	5.46879064582	5.09408637347325	5.09857302824478	5.20794656792265	5.39078301127211	-0.366289523074097	0.320887446535364	0.714648154651698
Merged-chr6-128201545-3	chr6	128201041	128202041	+	970.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17738.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	6.14581624976815	6.3461610311822	6.12547090526838	4.56970125217065	4.44986932582731	4.51301078583954	-3.5766956738409	2.48822209398202e-19	1.5112407590953e-16
Merged-chr2-90549583-3	chr2	90549074	90550074	+	762.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	RSINE1|SINE|B4	31073.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.21252371054725	5.29898405772846	5.38233492056194	5.5022517937784	5.54557888029543	5.53251911031752	0.453343786133221	0.171269066570892	0.54929681202709
Merged-chr14-30550526-2	chr14	30549988	30550988	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	1357.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	4.94612032128285	4.99894981525133	4.99258288287552	5.15216401371939	5.08048799568472	5.22396863563384	0.359248902698912	0.321205168850869	0.714789344506301
Merged-chr8-94745552-4	chr8	94745056	94746056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009137)	promoter-TSS (NM_009137)	-128.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	2.40308773232259	2.33572559949638	2.3651819888141	2.76026461899014	2.48132648761428	2.70162282177884	1.74306990722938	0.0364442152690072	1
Merged-chr2-164910702-4	chr2	164910189	164911189	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_199027, exon 2 of 28)	exon (NM_199027, exon 2 of 28)	1061.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	6.01173758469712	6.06521142862797	5.7061055315658	6.15589122105405	6.24678640781063	5.79729032945354	0.250350668997078	0.434348335206064	0.798366570408583
Merged-chr2-158177184-4	chr2	158176683	158177683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-14825.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	6.92804237227113	6.64349964069761	6.98557336369424	6.81684294225461	6.78733013040583	6.59017137128416	-0.177825526092027	0.503404664265659	0.837026063669584
Merged-chr10-39387221-3	chr10	39386720	39387720	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	17421.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	3.43836277660425	3.38768348874697	3.15057053549331	2.91462003733823	3.017351512938	2.9072806623028	-1.73775560846375	0.0132825737480779	0.122448082919351
Merged-chr11-44415443-1	chr11	44414943	44415943	+	1000.0	f0_c57.idr	TTS (NM_001303244)	TTS (NM_001303244)	15380.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	7.75400651369205	8.01353424633822	7.66416303730306	7.78003310727966	8.09333911566972	7.77483643773752	0.104558801774165	0.665945987484621	0.907947624137969
Merged-chr9-83534511-2	chr9	83534011	83535011	+	743.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13827.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.22738637770794	2.23175759822753	2.44066926696714	2.17062909604556	2.35872743033353	2.32478487223691	-0.0733341880445684	0.9320843831169	1
Merged-chr10-87858841-6	chr10	87858370	87859370	+	782.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	-182.0	NM_001111275	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.80275140982552	7.10178804270077	6.70287203657896	7.42964792849486	7.61563386246315	6.93834033874861	0.723268674109967	0.0134966307823351	0.123671424155632
Merged-chr3-89835657-4	chr3	89835166	89836166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	4296.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	5.05277322541866	4.94899001527152	5.12414849997429	5.23923996915697	5.07017608159668	5.25228169266159	0.303429912310745	0.402413319658183	0.778019718782707
Merged-chr3-69598992-4	chr3	69598506	69599506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020026)	promoter-TSS (NM_020026)	-46.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	6.48636591233347	6.18459822496497	6.47994987429521	6.21893270796254	5.92945029294124	6.15761251407476	-0.478196727515482	0.104981753692001	0.432306361005943
Merged-chr9-87171696-4	chr9	87171151	87172151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	B3|SINE|B2	22423.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	6.50831830006095	6.44264244184245	6.06615436137476	5.63345128790828	5.88892255232766	5.91339127943755	-0.933335019512496	0.00266725078283028	0.0385106026614162
Merged-chr15-58264030-2	chr15	58263530	58264530	+	868.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49138.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	4.39860993914619	4.05952043731053	4.17158055861293	4.21735620021502	3.88174958012697	4.19381746004224	-0.339085866452767	0.496001556579074	0.832855017149606
Merged-chr5-72222281-2	chr5	72221781	72222781	+	663.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	18938.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.5859268667428	4.51705980663592	4.68913850619909	4.95297048386239	5.07251589923936	5.08103715034478	1.00845898839223	0.00969840811474281	0.0983768307218724
Merged-chr5-140140357-2	chr5	140139857	140140857	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	34561.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	2.48250569270999	2.47761075426845	2.74879167348321	2.55534988156015	2.37216307730011	2.45012971383942	-0.662442621031847	0.412863630326688	1
Merged-chr8-57512900-3	chr8	57512399	57513399	+	950.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008252, intron 2 of 4)	intron (NM_008252, intron 2 of 4)	1056.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	5.71103299418536	5.34969304403495	5.59734538679724	5.53310860212441	5.57315802419314	5.54829597783908	-0.013081498940384	0.968675034776997	0.992817369127793
Merged-chr7-114494229-3	chr7	114493733	114494733	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 2 of 15)	intron (NM_011055, intron 2 of 15)	68739.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	2.6799727077285	2.67044027329001	2.86078531394425	2.80702081914124	2.72373271609988	2.55521097677606	-0.176584661870089	0.815580664984361	1
Merged-chr9-66601200-4	chr9	66600697	66601697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8082.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	6.13671359275925	6.50107062327405	6.60526506012897	6.15563829484506	6.37900447986916	6.56750324987609	-0.0825058221330304	0.785157435351024	0.947850129107983
Merged-chr4-105158316-4	chr4	105157826	105158826	+	789.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	CpG	979.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.1129411203362	6.5008701503268	6.20782560397326	6.45498513671691	6.23179588398232	5.99682154828668	-0.0705317431300663	0.819195293070105	0.957209935971094
Merged-chr11-62646363-4	chr11	62645861	62646861	+	971.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1688.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	4.61112814698286	4.40383854199683	4.57861556627348	4.53511493829777	4.27782417561736	5.02864523525637	0.258286759903861	0.585995778412413	0.875216158388641
Merged-chr3-138482136-2	chr3	138481614	138482614	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175224, intron 2 of 10)	intron (NM_175224, intron 2 of 10)	7268.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	2.92651177347756	2.77622982965483	2.89145424832654	3.50823027287138	3.32987598187134	3.39087546851671	2.5797293758744	0.000341752335469313	0.00775546877689973
Merged-chr11-51891940-2	chr11	51891440	51892440	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-34310.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.00607405435796	4.99841564043112	4.86024463244739	5.10552920956159	4.85568827883388	4.59153631519613	-0.186047473108791	0.645430725528435	0.900561664422279
Merged-chr14-75131657-4	chr14	75131146	75132146	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	523.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	6.99768803525336	7.11154116013085	6.77723458319324	7.187909950486	7.40536791021811	7.21060642630633	0.448465605803131	0.0744178579874841	0.358882643295617
Merged-chr3-90077612-4	chr3	90077105	90078105	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	-1916.0	NM_001253738	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	3.39254163224139	3.25465547422677	3.41707928336957	3.15611407591311	3.23150046437637	3.14748795073426	-0.706853188960072	0.258452573430963	0.656043046596035
Merged-chr7-126701751-2	chr7	126701251	126702251	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 4 of 10)	intron (NM_001301374, intron 4 of 10)	2469.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	5.1387434690104	4.88076989037378	5.01415071565121	5.19284260861863	5.24525033782632	5.14856806197951	0.384870383026117	0.29101767822741	0.688788068334381
Merged-chr5-135008995-4	chr5	135008502	135009502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190437)	promoter-TSS (NM_001190437)	-150.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	8.05915377690622	8.3234523163416	7.93863164251343	8.03883499476884	8.37980687892183	7.99467742350358	0.047551517511891	0.845287402774601	0.963765935544047
Merged-chr1-55838310-4	chr1	55837794	55838794	+	958.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92947.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.9197604473598	3.67736290239424	4.31638139083835	4.25973136723433	4.42748311725693	4.42430451506503	1.08332694722919	0.0374616830811634	0.239189052011774
Merged-chr1-37029969-4	chr1	37029467	37030467	+	905.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90440.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.32510000571877	4.06598474590331	4.21238286114594	4.61006809098976	4.61723339410323	4.28220830611959	0.822329091814201	0.0747668799412761	0.359960802300162
Merged-chr1-184730895-4	chr1	184730394	184731394	+	751.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008250, intron 1 of 3)	intron (NM_008250, intron 1 of 3)	1599.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	6.50321652158177	6.50839217221038	6.78009061986153	6.93066297210867	7.01138849019111	7.0318963115895	0.620173987010837	0.0150956335002734	0.133301816330668
Merged-chr14-70959009-4	chr14	70958510	70959510	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	L1_Rod|LINE|L1	68903.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.4085241708563	5.2696025532897	5.55063415985434	5.57816768195865	5.48808325017971	5.47139209052072	0.208737031557483	0.531474144312481	0.851635962022703
Merged-chr7-127760494-2	chr7	127759994	127760994	+	669.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9321.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	3.89076588440738	3.89663224603374	4.20607886964747	4.03767052318535	4.09916325833756	4.31489741712704	0.446486586240129	0.370147815595247	0.754629515611739
Merged-chr7-30878545-2	chr7	30878045	30879045	+	867.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001043317, intron 3 of 15)	intron (NM_001043317, intron 3 of 15)	483.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	5.53972750635011	5.70886162279043	5.84995779427891	6.05323827188905	5.45762460809428	5.93432765841052	0.239580973226707	0.493386457495446	0.831238089043545
Merged-chr7-19692104-4	chr7	19691595	19692595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110009, intron 2 of 3)	intron (NM_001110009, intron 2 of 3)	564.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	7.74380148028516	7.76555897713647	7.72647703480539	8.23664451005758	8.63501996838543	7.62969652406091	0.703578196605154	0.0168966296309159	0.144272422609466
Merged-chr17-67449599-4	chr17	67449065	67450065	+	744.325012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-95074.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.93966232211277	4.78887220227268	4.39664269777972	5.2523178469794	5.3291731729556	5.02951979086943	1.01579467859154	0.0156811623888132	0.136986683469645
Merged-chr10-21888224-2	chr10	21887724	21888724	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	6040.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.70522830636571	4.63252405285005	5.10363324564074	5.18016846599237	5.12719928861777	5.03402200909639	0.659046935728129	0.0955231306755268	0.41197784985483
Merged-chr3-104790540-4	chr3	104790047	104791047	+	930.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	1513.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	5.82178510577687	5.6389013135801	5.77019510348364	5.65843010035401	5.39991118117163	5.27845157545482	-0.530748440591652	0.112246721953977	0.447545413788228
Merged-chr9-89268996-4	chr9	89268493	89269493	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57609.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.23900776748765	5.33953369413311	5.88441204282906	5.31436585397425	5.02500598088676	5.24692261347903	-0.612779845034787	0.114982115440338	0.452681859179267
Merged-chr11-23770320-4	chr11	23769835	23770835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	635.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	8.98408393256158	8.79109217712209	8.7054817408351	9.01185401354556	9.17515940279245	8.67698235540724	0.195620126775674	0.397824039188719	0.774593722474986
Merged-chr1-106320805-4	chr1	106320304	106321304	+	931.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	148935.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	3.42979099716452	3.53991122818605	3.46728126896267	3.46933022607132	3.51822287729455	3.36825434464174	-0.0843242309509322	0.884546018362403	0.973510728214101
Merged-chr10-81168997-4	chr10	81168485	81169485	+	912.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1265.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	5.63700238180913	5.50687337278645	6.28271899137077	5.71155778364575	5.9347864318941	6.11616641418574	0.149454323503509	0.686066732922475	0.91659539440007
Merged-chr19-21653727-2	chr19	21653227	21654227	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	418.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	6.00123490032284	5.59546216273582	5.7423195049802	6.21180353181072	5.41688533142438	5.778503786088	0.0908312314219001	0.808304235934084	0.954683711776353
Merged-chr9-21963623-4	chr9	21963177	21964177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010149)	promoter-TSS (NM_010149)	-101.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	6.02205804872673	6.24178640083638	5.84913909041797	5.18610371993781	5.80024624067002	5.43069587997243	-0.972018556831963	0.0073321584424461	0.080842370266879
Merged-chr17-46858410-4	chr17	46857890	46858890	+	817.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26977.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	7.46521093532115	7.28960695609176	7.07040861527064	7.6785207953812	7.29176691171447	7.51046308194026	0.306812469842313	0.232679236664864	0.628965135652341
Merged-chr8-92846771-4	chr8	92846277	92847277	+	954.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-8556.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	2.99149985925193	2.84804116742991	3.07959370589792	3.24949060416019	3.29411375703739	3.26774261572618	1.34690664562992	0.0421386092325615	0.257020187437544
Merged-chr2-153239938-2	chr2	153239438	153240438	+	616.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	1420.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	7.428075527805	7.59386722748321	7.43276848736465	7.52983645371739	7.74933214211126	7.28702374294202	0.0827869649391976	0.737691226660905	0.933858424870961
Merged-chr1-36269380-2	chr1	36268880	36269880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153408, exon 2 of 4)	exon (NM_153408, exon 2 of 4)	4045.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	2.7852797190818	2.52800728727314	3.00193843862551	2.92937184147355	2.59438394943402	3.01769020884911	0.366237766718367	0.643666183741203	0.899925661470209
Merged-chr12-111429197-3	chr12	111428714	111429714	+	898.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 12 of 13)	intron (NM_001289487, intron 12 of 13)	11769.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	7.08230256638324	7.08177703694715	7.04247170009935	7.51418888333973	7.60882921595487	7.51397898756287	0.709812653942497	0.00173477825495996	0.02770584050647
Merged-chr8-88656182-4	chr8	88655702	88656702	+	970.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8855.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	2.76970382676703	2.91637337939164	3.1410703408956	2.93048893133497	2.90603106863471	2.86386699678788	-0.209767953667318	0.766813333326329	0.942573703853445
Merged-chr15-93398384-4	chr15	93397853	93398853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175363)	promoter-TSS (NM_175363)	3.0	NM_175363	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	8.01363409368063	7.9383978706567	7.85679992196318	7.7452474823522	7.93702171644689	7.83110066065147	-0.139807282881805	0.518789286932204	0.845458478339435
Merged-chr19-55316505-4	chr19	55316003	55317003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033573)	promoter-TSS (NM_001033573)	446.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	7.45635452848003	7.82296165567277	7.54868940416661	7.65067681976197	7.5567013391067	7.45239705650364	-0.0938941330511033	0.695278381261184	0.919230570201314
Merged-chr12-25099568-4	chr12	25099064	25100064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3472.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	8.45868711030905	8.99928776285887	8.42023962623021	8.66212764259808	9.08175399507828	8.28791952547401	0.0913913214021885	0.755082118925259	0.939216626504082
Merged-chr6-87499080-2	chr6	87498580	87499580	+	937.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-2753.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.36274823993924	5.159876872994	5.26597626950217	5.11810422009599	5.22538362883976	5.38956096872072	-0.0448867869929407	0.898997334121218	0.976435799678344
Merged-chr11-101659320-2	chr11	101658820	101659820	+	634.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-6221.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	4.8160513995305	4.58321279387025	4.61338803593399	4.38898835063514	4.78392484968368	4.9737522065265	0.130253475765389	0.766591551994949	0.942514441514779
Merged-chr11-118477960-5	chr11	118477470	118478470	+	948.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153103, intron 1 of 13)	ID4|SINE|ID	1138.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	6.75118101284888	7.23094760948391	6.82203876688745	6.89755286506887	7.12471740064625	6.83473454121918	0.00826260076416233	0.976366283037546	0.994704381798224
Merged-chr16-64852695-4	chr16	64852186	64853186	+	922.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	685.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	6.76311052078409	6.64853407819208	6.7643806782209	6.80298365757548	6.79647309339975	6.74567661310345	0.0933516929496972	0.707469791038271	0.923406217611176
Merged-chr1-135729263-5	chr1	135728828	135729828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007791, intron 1 of 5)	CpG	161.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	8.19391081192348	7.86464398197175	7.64636104892874	8.08555690099545	8.0694575953607	7.7589010124653	0.0794621396800724	0.75544997023374	0.939315847504439
Merged-chr5-21196989-2	chr5	21196481	21197481	+	858.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 3 of 26)	L1_Mus2|LINE|L1	10714.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.61270251462108	3.37192407975378	4.22031374151496	3.55009184972017	3.69376469423331	3.71259750517324	-0.410538004500978	0.513891160366882	0.842830426324247
Merged-chr19-34593672-2	chr19	34593172	34594172	+	786.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001110517, exon 2 of 2)	exon (NM_001110517, exon 2 of 2)	5755.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	3.81078041792508	3.38384805989735	3.59107045237355	4.15231847147766	3.90243445371592	4.37415474186145	1.69751865038954	0.00345997296454882	0.0468278188734838
Merged-chr4-155601605-7	chr4	155601109	155602109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177186, exon 1 of 9)	5' UTR (NM_177186, exon 1 of 9)	193.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	8.56822947868702	8.80436511287517	8.20071640013528	8.55859581150733	8.60549925223336	8.01178539944365	-0.177665640290681	0.517033401360211	0.844464054936108
Merged-chr5-31290232-7	chr5	31289833	31290833	+	769.257141	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	781.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	6.91751029024902	7.49886998018223	6.85918072248915	6.87310209632623	7.3725545822514	6.97668791678803	-0.0523183143039298	0.865749027639995	0.968641478520565
Merged-chr1-152577085-2	chr1	152576585	152577585	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	48132.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.38371990564025	4.31704287276111	4.43619858474072	4.52422711609586	4.17524745525616	4.66072417627076	0.206290204963187	0.653845821853091	0.903558174250044
Merged-chr19-55701009-4	chr19	55700527	55701527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1177.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.81963716720916	8.06067511553157	7.80434361967069	7.97103331094713	8.20409800922204	7.86063653999981	0.174062387661772	0.455052616149121	0.810705879125063
Merged-chr15-97347610-2	chr15	97347110	97348110	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-100323.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	3.88012982080795	3.6595149866195	4.13793970271187	3.82241921540831	3.76040553726541	3.88581953640192	-0.242536431683989	0.652157012440381	0.902896807825606
Merged-chr8-70627205-2	chr8	70626672	70627672	+	796.666626	f0_balb.idr|f1_balb.idr	Intergenic	MERVK26-int|LTR|ERVK	4923.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.96259494924012	3.86141150491774	4.30948112813265	3.75693801581051	3.45513963995781	3.89796433239641	-1.08866412038779	0.0544608507722753	0.299693077739533
Merged-chr14-58308957-4	chr14	58308427	58309427	+	903.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	236241.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	5.27652484401803	5.35833197279899	5.58430244562005	6.30852579251926	6.50848350730632	6.22383841437021	1.70406279760874	3.84403484446204e-08	3.05204629139311e-06
Merged-chr2-4548595-3	chr2	4548101	4549101	+	933.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-11153.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.07408435534338	4.38797903460664	4.29459150245629	4.15454944939157	3.86349308931809	4.44402053885656	-0.25970068200061	0.610496453129558	0.885618453459863
Merged-chr12-88361335-4	chr12	88360833	88361833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361598, intron 1 of 9)	MER5A|DNA|hAT-Charlie	551.0	NM_001361598	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	6.25279704315976	6.62772088939801	5.97969466947094	6.34266183364017	6.35345012554991	5.91285406442288	-0.16226028427792	0.625455693458617	0.892513881101067
Merged-chr1-128591469-2	chr1	128590975	128591975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356509, intron 1 of 1)	CpG	824.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.06174221896963	7.73605473066137	7.31494235348695	5.59487871052674	5.54366209715353	6.12051422773642	-2.66092547989558	8.3455651711401e-16	2.71256947953213e-13
Merged-chr4-16083314-3	chr4	16082820	16083820	+	969.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69432.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	3.53862545901497	3.42476182841075	3.55105152499902	3.53587030275432	3.46494344867129	3.51384282983365	0.000226635519662766	0.999682043024712	0.999922385872965
Merged-chr7-88309760-2	chr7	88309260	88310260	+	671.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009982, exon 7 of 7)	exon (NM_009982, exon 7 of 7)	31675.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.24618027961992	3.59484873568346	3.8597383998424	3.62393662945513	3.35270364640072	3.17563661458301	-0.679846982745976	0.308578325668148	0.70458397876447
Merged-chr5-114687996-2	chr5	114687496	114688496	+	838.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	2939.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	3.06381599570543	2.86547657229633	2.98447354456973	2.69627385430943	2.80945445929703	3.16856221853388	-0.341952283795891	0.641404183097564	0.89898359807944
Merged-chr2-157426927-2	chr2	157426447	157427447	+	839.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025395, intron 1 of 13)	GA-rich|Low_complexity|Low_complexity	2654.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	4.81268490257419	4.66538802787401	4.61689461069573	4.09337656740782	3.99067042050443	4.15290332338899	-1.68199659041755	0.000220347197696358	0.00541644006674109
Merged-chr11-89019007-2	chr11	89018483	89019483	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	19580.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.14948769701415	4.66476806446486	4.9941583146296	4.72980493994233	4.72101270187297	5.05757686842548	0.45569403719156	0.344250723449689	0.732980075743821
Merged-chr5-136083883-4	chr5	136083360	136084360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133914)	promoter-TSS (NM_133914)	-56.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	6.98518984189002	7.10680936490242	7.00698986160907	7.03134137843997	7.32058010104249	6.9095048145452	0.113076800256312	0.659183942787843	0.905254621414274
Merged-chr10-98815037-4	chr10	98814512	98815512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99630.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.24239166411612	4.21115094066968	3.69963088169833	4.07903085120496	4.18553247721175	4.09889113321859	0.110987228058375	0.834215218740173	0.961273502395445
Merged-chr10-20653481-4	chr10	20652966	20653966	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	B4A|SINE|B4	71612.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.37933140913091	4.05377472884002	3.94969447229715	3.79753594196758	4.06335297349909	4.0198889163471	-0.522230507926225	0.313463803982244	0.708061492184189
Merged-chr8-11009554-4	chr8	11009072	11010072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	CpG-13826	-1142.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	7.96131812047194	7.7032155209455	7.53194993227339	7.44743689329697	6.82728577576011	7.02460200849692	-0.913348981622755	0.00122894212039666	0.0211582486972823
Merged-chr2-173352390-4	chr2	173351837	173352837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75804.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	5.72081182907785	5.42794394499608	5.90889577497165	5.4813683177652	5.57791767746825	5.75890804865642	-0.157829542525764	0.64297793116814	0.89955790576874
Merged-chr4-141638324-3	chr4	141637808	141638808	+	834.477783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-14474.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	4.39751359888986	4.61932378228317	4.58962312640665	5.55111146098259	5.293571773784	4.79040178174427	1.58379338201399	0.000235670765001889	0.00572044720369814
Merged-chr6-84750607-3	chr6	84750111	84751111	+	776.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-156703.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.31439730945584	4.6383832237751	4.46447617881464	4.38779451776026	4.54727775035198	4.80201467007927	0.248047784718719	0.578677061137743	0.872437129840066
Merged-chr8-11756047-4	chr8	11755559	11756559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113517, intron 1 of 18)	Tigger17|DNA|TcMar-Tigger	-2271.0	NM_017402	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	2.39281993742381	2.42905400176582	2.49106023388081	2.49158924262435	2.47039885823117	2.68807231064821	0.680787118756469	0.390660226554496	1
Merged-chr18-68062217-4	chr18	68061761	68062761	+	955.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	129088.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.61681248829021	4.64372949202671	4.10012376591539	3.97639476366537	3.92079576669547	4.31411328302644	-1.1221805300047	0.0272482853843367	0.196624345699409
Merged-chr16-44109305-4	chr16	44108804	44109804	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358203, intron 6 of 14)	intron (NM_001358203, intron 6 of 14)	29955.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	5.36479470010214	5.17005392053502	5.70878782333466	5.50880467961522	5.57706673195882	5.22330445186525	0.0644918004344519	0.861178084208031	0.967789299492425
Merged-chr11-116853229-4	chr11	116852750	116853750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-156.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	9.12714631404342	8.89539481514267	8.79342399125044	8.45318048880524	8.70433556473599	8.47901426609522	-0.543661720455076	0.0129530530053821	0.120639985949388
Merged-chr3-127355434-4	chr3	127354936	127355936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	53622.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.28959131950201	4.91940301561658	5.127838199076	6.1451251027487	6.28590778705723	5.81235294748267	1.83384568693914	1.62284391140036e-07	1.09605191704384e-05
Merged-chr2-102896608-1	chr2	102896108	102897108	+	562.0	f0_c57.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	5057.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.71496437470134	4.30405951152199	4.71803908812591	5.05278081362212	4.69178499000332	5.30772883361057	1.00012282472726	0.0255486089880846	0.18948646552104
Merged-chr18-53915194-3	chr18	53914715	53915715	+	774.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	53102.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.92408206893403	3.85593030954282	3.55786348827676	3.29015022404545	3.10784332949598	3.33908767914858	-2.18536913171	0.00058001688948582	0.0118115627362546
Merged-chr15-53133424-2	chr15	53132924	53133924	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	212759.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.69440040895882	2.42940553607061	2.79889079038155	2.46226553429572	2.63764444370192	2.43319638709509	-0.732517143575723	0.377304750236036	1
Merged-chr17-27827796-2	chr17	27827296	27828296	+	641.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7254.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	4.58697666904596	4.82755204425204	4.57290815539122	4.55846773279389	4.51058567682713	4.32598925018636	-0.482776155671184	0.262722278469881	0.660720405818831
Merged-chr7-19219164-2	chr7	19218664	19219664	+	558.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175668, intron 1 of 1)	intron (NM_175668, intron 1 of 1)	6626.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	2.94825199273702	2.99925214410767	3.03617182025785	2.74151795784742	2.61011226118965	2.81062052878646	-1.46248002357512	0.0468779482757532	0.274117690517515
Merged-chr4-101161548-2	chr4	101161048	101162048	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 16 of 24)	intron (NM_146145, intron 16 of 24)	92510.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.14741693743739	3.03508403455733	3.27119857998082	3.00980723856861	2.8336016897202	3.17776949622986	-0.649124389820902	0.341866008336623	0.731071365244764
Merged-chr11-102881079-4	chr11	102880579	102881579	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	-104.0	NM_001109995	20624.0	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	7.70644944103551	7.43538798748288	7.17811234360793	7.33989210191179	7.4119103767886	6.86491048981228	-0.335157856332049	0.238962026234761	0.635631523582239
Merged-chr16-33945983-2	chr16	33945483	33946483	+	636.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 12 of 14)	intron (NM_001145884, intron 12 of 14)	21055.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.19906625995342	3.28953459875998	3.50993923897196	3.35894834928783	3.06007249770639	3.47700105427098	-0.120734612497625	0.85144662527724	0.965220310573141
Merged-chr13-51846607-4	chr13	51846106	51847106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-69.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	7.31932066691531	7.22169998034378	7.22484329665497	7.38839022665677	7.41450907440734	7.53765689884534	0.278382244204251	0.222182334370366	0.617071180265092
Merged-chr18-62224903-4	chr18	62224402	62225402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44802.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	5.49390159941697	5.44666657938	5.29447428971557	5.13168311526075	5.53396679152398	5.64615246195469	0.0639697614940868	0.858236524400932	0.966858173874259
Merged-chr13-73434205-4	chr13	73433726	73434726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33157.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.21319324449535	5.16792169616141	4.86605484154295	5.35006780188782	5.25845351869474	4.8083546620905	0.145295610723734	0.715655880090729	0.926432385932594
Merged-chr17-8311869-4	chr17	8311381	8312381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073374)	promoter-TSS (NR_073374)	-763.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	8.01455282058793	8.61157877541597	8.15877563734677	8.07764855893762	8.44767643359844	7.94998160357269	-0.153600497339482	0.572644449129228	0.869896838396072
Merged-chr6-116083433-4	chr6	116082956	116083956	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-88451.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	3.98727238714244	4.12740184781966	4.24295043745399	3.88501044505618	3.66508029196894	3.79070492861983	-1.04913190014539	0.0423348587072227	0.257869206778787
Merged-chr15-75920380-5	chr15	75919829	75920829	+	942.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025412, intron 1 of 5)	intron (NM_025412, intron 1 of 5)	1231.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	5.3658052861053	5.58109229638945	5.61699229457503	5.57364227389724	5.33207436661292	5.45506110357604	-0.131066879147677	0.697156010369288	0.919859963548202
Merged-chr3-116106993-3	chr3	116106503	116107503	+	607.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22685.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.86861905568063	4.64324508670473	4.74879694349411	5.24864406637336	5.31717505531925	5.08061108359739	1.01096865629069	0.00769634642506925	0.0836683555444424
Merged-chr3-31093786-4	chr3	31093299	31094299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1259.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	7.77587324275947	7.91186485858433	7.81717311802744	8.15404458967924	8.37835383870714	7.76891345867067	0.421514444482963	0.0907736573174462	0.400949913901161
Merged-chr19-47465126-2	chr19	47464626	47465626	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164717)	promoter-TSS (NM_001164717)	-715.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.656522473392	6.65740735777035	6.42319250396053	6.23642040621814	6.20494143344625	5.93426684383589	-0.734802605034505	0.00980555417829333	0.0991012452407909
Merged-chr5-113999169-2	chr5	113998650	113999650	+	956.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4585.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	4.65856105916616	4.95645708656957	4.67477510751769	4.56758534069229	4.6417377526174	4.85503712877981	-0.210047190677404	0.613158529954234	0.887067633842162
Merged-chr15-74679246-3	chr15	74678709	74679709	+	749.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6639.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	2.59059430065406	2.74818793015194	2.73735847849019	2.27586288671893	2.26991557057917	2.75130727586583	-1.47051478318949	0.109387382456003	1
Merged-chr1-165669867-2	chr1	165669367	165670367	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-35326.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.30731689534121	4.09372328347164	4.49640444990512	4.32463604817046	4.22999053363975	4.4827516062457	0.112904026815275	0.808855389902299	0.954721853010197
Merged-chr16-20370646-2	chr16	20370146	20371146	+	982.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 17 of 29)	B2_Mm2|SINE|B2	-45242.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	2.80571018504774	3.27208660829097	2.78817238290064	2.93168741855378	2.6892202518728	3.04933249537283	-0.390811898638578	0.611385173854071	0.886073494610098
Merged-chr2-170329360-3	chr2	170328886	170329886	+	720.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-26975.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.21359076669262	6.64315858917931	6.94168167371997	7.21725891333295	6.8272236604519	7.11799152038007	0.160091379121966	0.578259193986651	0.87240568986712
Merged-chr15-12139329-2	chr15	12138829	12139829	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358823, intron 4 of 18)	intron (NM_001358823, intron 4 of 18)	21478.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	2.8889469035534	2.78339813493074	2.9238151236818	3.00235631200052	2.88288137720865	2.67837165063432	0.00229311911922088	0.997482617224971	0.999496959972402
Merged-chr1-54500746-2	chr1	54500246	54501246	+	718.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163314, intron 19 of 26)	RLTR45|LTR|ERVK	56938.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.58811413286951	3.6010623925341	3.61104027486601	3.52566804764092	3.62777418452634	3.97148789349174	0.388437266098133	0.492225667668831	0.830994744483672
Merged-chr1-171223411-3	chr1	171222896	171223896	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-882.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	6.64890561699747	6.0477039155325	5.9792564657229	7.28791868949093	6.98624918794208	7.06200194412116	1.32153454806133	3.56631070627579e-05	0.00118936104708535
Merged-chr6-97148784-6	chr6	97148249	97149249	+	892.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175313, intron 1 of 17)	CpG	134.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	7.59553279281453	7.94869273283773	7.50693814772642	7.3097230973728	7.38466511672299	7.16415964755335	-0.59993617495249	0.0168806999121416	0.144207144265833
Merged-chr6-122640000-1	chr6	122639500	122640500	+	802.0	f1_balb.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	13576.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	4.55216755191426	4.50360963355107	4.60824376010977	4.9177610281414	4.8647564014659	5.07501204585855	0.918108735424688	0.021261164708818	0.16811736131249
Merged-chr6-92091431-4	chr6	92090934	92091934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011630)	promoter-TSS (NM_011630)	16.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	7.60195922394966	7.45677362987344	7.71811586996173	7.77599722126687	7.21676415971147	7.55762933030463	-0.0859785318374921	0.741382824479196	0.934809943386314
Merged-chr5-127613001-2	chr5	127612545	127613545	+	678.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	B1_Mus2|SINE|Alu	4347.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	5.44065313370401	5.6460058803459	6.01024684576864	6.04549536346925	5.98100935263314	6.02733030135767	0.553167448315592	0.0903051561919294	0.399559259620231
Merged-chr9-121706229-2	chr9	121705729	121706729	+	792.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-1200.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	6.81775123687789	6.76584934517151	6.7139311437998	6.67937471108501	6.81786885363597	6.41824640057842	-0.167836759228976	0.529759929908037	0.851048470960073
Merged-chr10-62339526-4	chr10	62339011	62340011	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	910.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	5.61064716499248	5.3766133016663	5.39826819297117	5.52654012743401	5.42985568229544	5.65862340110424	0.122012244564723	0.715458381783114	0.926392907650078
Merged-chr18-50023020-2	chr18	50022537	50023537	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-7947.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	3.02878240531461	2.89031691141639	2.91827279566539	3.05657819602516	2.66095419549742	2.99167157877758	-0.175721655503747	0.809348677507411	0.954721853010197
Merged-chr5-95956991-2	chr5	95956491	95957491	+	936.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018866)	promoter-TSS (NM_018866)	52.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	3.53613946552073	3.29039714891684	3.23320088268018	3.56147199850952	3.14428894124024	3.58645806312312	0.295047653903686	0.647771046237513	0.901529315993962
Merged-chr7-28435381-2	chr7	28434881	28435881	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	810.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	5.82042609674809	5.80014562623211	5.89635850649361	5.83149962695087	5.8692099639366	6.21291981258963	0.238961084487319	0.440605154952446	0.801886710894642
Merged-chr13-44638435-2	chr13	44637843	44638843	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-92431.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.56602514686984	4.81687697642628	5.02835908424717	5.28388650203079	4.92772414848547	5.05891234080134	0.629242887304147	0.120227918662068	0.463702820804366
Merged-chr12-102370362-3	chr12	102369849	102370849	+	722.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	YREP_Mm|Unknown|Unknown	69464.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.4227544589656	5.73530530132216	6.05723555660177	5.70171380123799	5.41863132388734	5.35936125825379	-0.464114505486333	0.201396808675241	0.590984054786189
Merged-chr1-177796679-4	chr1	177796161	177797161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007422)	promoter-TSS (NM_007422)	-152.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	6.66888232037083	6.82553243412219	6.67554570033758	6.82848506689908	6.68073944862532	6.66877520454587	0.000167681662796654	0.999475291731853	0.999920050950963
Merged-chr16-35984912-2	chr16	35984412	35985412	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	1549.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	4.77435570231811	4.38695631518971	4.35794691083758	4.66572835717866	4.74903906608373	4.47230677362473	0.273800947230017	0.540859144699529	0.856572781885228
Merged-chr2-68888332-4	chr2	68887790	68888790	+	978.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	26849.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.79174053201928	4.57199411521644	4.59972451700936	5.25579662643676	4.73163923191684	4.48691337416688	0.479822947209552	0.291936857501403	0.689235268138963
Merged-chr5-102032048-2	chr5	102031548	102032548	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	37873.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.98560564075192	6.86057306863717	7.10947379266758	7.11043567387361	7.23653147681917	7.06542741291778	0.244821106260352	0.315857008591965	0.710103428795101
Merged-chr16-91486486-2	chr16	91485986	91486986	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	B3|SINE|B2	1271.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	4.4254565014285	4.65976207318122	4.52341959538749	4.51219316434603	4.52523070848252	4.27522937071713	-0.226346801811978	0.606065642771718	0.883852453137866
Merged-chr8-120111241-2	chr8	120110741	120111741	+	907.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-2911.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	6.38952061531987	6.14511480305917	6.67290701915963	6.73326694297853	6.83396606781863	7.04794021560548	0.737391143816137	0.0104764599339706	0.103764465919036
Merged-chr16-76282132-2	chr16	76281632	76282632	+	892.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90917.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.66738598617724	2.62709720950891	2.73131725608714	2.70877997988415	2.60784161298554	2.86305284985483	0.278856449479096	0.707059252244217	0.923203450040592
Merged-chr9-59660663-2	chr9	59660163	59661163	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	4295.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	4.82584669079719	4.87208643611212	4.74056100732658	4.7790190717164	4.68628637913819	5.51678951910558	0.483671756872072	0.2847897460256	0.682457480121006
Merged-chr2-168205444-4	chr2	168204944	168205944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310086, intron 1 of 4)	intron (NM_001310086, intron 1 of 4)	1668.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	5.25126944106108	5.34709988492915	5.37868277618092	5.4909159348053	5.52544956601242	5.78899924428029	0.530513664740397	0.114726116734917	0.452208192866616
Merged-chr2-77280810-4	chr2	77280311	77281311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-219.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	7.14295524000883	7.04825378692452	6.85870155412201	7.1995067564531	6.76061689599293	6.7613128968521	-0.154176763391537	0.573032096258326	0.869947175774374
Merged-chr4-15989062-3	chr4	15988547	15989547	+	905.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013752, exon 14 of 16)	exon (NM_013752, exon 14 of 16)	24791.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	3.38538070043942	3.18740657035186	3.56526246325947	3.10643713304417	3.34006416492883	3.37508117235944	-0.406786359602149	0.523015510621755	0.847930260153775
Merged-chr4-114997900-3	chr4	114997412	114998412	+	726.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2206.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	2.35570304070827	2.44787483141742	2.27548459343887	2.41502969729672	2.31341974767253	2.60819086354414	0.512816897941176	0.54159558778273	1
Merged-chr2-174016771-2	chr2	174016271	174017271	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60280.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	2.34139628416405	2.51768427824427	2.52093371973772	2.35219649643095	2.23997604350612	2.3380596644933	-1.00774884962651	0.230675855430508	1
Merged-chr2-119300344-4	chr2	119299859	119300859	+	955.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11617.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	3.00591013541298	2.71550077221046	3.03665186382702	3.0040953306823	2.63929017987353	2.74274625310708	-0.59503090887901	0.432232586794675	0.797270167804312
Merged-chr8-39651913-4	chr8	39651410	39652410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-9232.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.12777229122648	6.19327475591971	5.88413924856373	5.70568929007866	5.82423472951028	5.8456231659008	-0.512032819901343	0.0910017630384533	0.401488584247276
Merged-chr8-120322701-2	chr8	120322201	120323201	+	938.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-94471.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	5.45955530274374	5.20043225456002	5.20632199982547	5.39799633989316	5.13544412144938	4.81793712462809	-0.304077962741049	0.433431073591962	0.797815674529737
Merged-chr11-54438580-4	chr11	54438056	54439056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173753, intron 1 of 17)	CpG	377.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	9.24117913637567	9.46088129318002	8.82757450430074	9.06603054341185	9.29318250941216	8.86869215844077	-0.158510140107809	0.529420652924148	0.850904712036958
Merged-chr11-97985878-2	chr11	97985378	97986378	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	568.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	4.03748089646078	3.87142492254686	4.14788474245466	4.08068311468063	3.99735134989836	3.82377677550217	-0.122207013026175	0.809328104757822	0.954721853010197
Merged-chr6-146170829-5	chr6	146170298	146171298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 51 of 56)	ORR1E|LTR|ERVL-MaLR	236676.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	6.09738706094257	6.49628306299247	6.20074431121964	6.25992183900218	6.01053916322055	6.06443343054735	-0.28006947206183	0.35263109584491	0.740194084833795
Merged-chr14-57745561-4	chr14	57745073	57746073	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015771, intron 1 of 7)	CpG	550.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	7.87498793985032	8.00895640722476	7.78154684808693	8.00767989958427	7.55798367602224	7.9032194092918	-0.088733790691923	0.713909135204938	0.925625529656531
Merged-chr17-27790817-2	chr17	27790317	27791317	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	29725.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	5.59094654345136	5.27992745939402	5.71924158686291	5.92088530193121	5.7037307413428	5.62149237689692	0.414992736120329	0.221074845286081	0.61561513090473
Merged-chr8-68914753-4	chr8	68914401	68915401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	34346.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	6.25003425569369	5.58675819276841	5.55896030533978	6.14369914762036	5.99616957567682	5.74010234039989	0.215921528145988	0.556528720688422	0.863603167403937
Merged-chr3-20348390-4	chr3	20347886	20348886	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175086, intron 1 of 1)	MusHAL1|LINE|L1	18791.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	2.68087728404446	3.16345652925329	2.87865977321284	2.9967646361903	2.97622737628423	3.01364421330769	0.308779387342671	0.675176148971385	0.912043524199016
Merged-chr14-59441530-3	chr14	59441007	59442007	+	917.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	544.0	NM_001360592	69008.0	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	6.9209131245827	7.2984590247512	7.19431527734177	7.13780561909915	7.29500672673202	7.1420152741617	0.0753377115210898	0.764933710604456	0.942102569612401
Merged-chr11-8660076-4	chr11	8659592	8660592	+	927.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	4443.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.8673279878449	5.88604343446093	5.66945515196937	5.23023363297535	4.85855961323445	5.114609170171	-1.4633707000998	2.90079542854424e-05	0.00100028755084256
Merged-chr8-72008537-4	chr8	72008045	72009045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	1081.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	4.28264841239844	3.91324154160211	4.63906111870861	4.61710546800659	4.47794438713326	4.94453971265651	0.957541560776938	0.0574265697796997	0.309238287485714
Merged-chr2-167801113-2	chr2	167800613	167801613	+	625.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109936.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.83199677068739	5.36811047536074	5.95163427300053	6.05027215219592	5.78693966791418	5.69166404463518	0.219073913096347	0.530126193143437	0.851070276054813
Merged-chr9-44177268-2	chr9	44176768	44177768	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	B1_Mus1|SINE|Alu	42610.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	3.98322998507489	4.19949730545675	4.10867368772786	3.7556558465158	3.33744686771507	3.84329918872624	-1.44388043691936	0.0121317115425755	0.115116370627736
Merged-chr1-54562909-2	chr1	54562409	54563409	+	555.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5225.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	5.54358932034158	5.73209120684257	5.73367882229965	5.10695994476184	5.26078807375127	5.18754372085421	-0.9316939597149	0.00610977891030055	0.0706985143489601
Merged-chr1-88299821-2	chr1	88299321	88300321	+	704.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6891.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.32126575322549	3.46911900027668	3.62757271978014	3.55855954537813	3.39289555075928	3.84110785577635	0.460991790764241	0.441734204950562	0.802865928078521
Merged-chr11-95009697-3	chr11	95009213	95010213	+	869.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146025)	promoter-TSS (NM_146025)	-166.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	2.27580942015694	2.40134685557669	2.56384822911735	2.71900470666354	2.42062838696321	2.63831250694476	1.09529619385843	0.18810892046521	1
Merged-chr4-99191434-1	chr4	99190934	99191934	+	750.0	f1_balb.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-2500.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.26063927947706	5.35208601282153	5.64276385706406	5.75280476296092	5.74515892885986	5.7806671862038	0.643960297081437	0.0503068894587688	0.285420010859984
Merged-chr7-143605534-4	chr7	143605035	143606035	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5445.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	4.17007074255852	4.11124804803884	4.49279860161912	4.27960034666295	4.09016763244861	4.08113337078976	-0.288305395446739	0.550742114584455	0.860762784243569
Merged-chr4-134535324-4	chr4	134534821	134535821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029759)	promoter-TSS (NM_029759)	-53.0	NM_001355187	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	7.07980979078649	7.04868432056116	7.03551488700727	7.00432906071534	7.17923524062251	7.2640563238287	0.1444864129928	0.547095864496773	0.859211669869909
Merged-chr13-41502553-3	chr13	41502076	41503076	+	971.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-15216.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.1434304849455	5.20616525210189	5.17009426704193	4.76341480260535	4.73874692274721	4.81005134283103	-0.88638415154336	0.0174328131639394	0.14737202347627
Merged-chr5-30920034-2	chr5	30919534	30920534	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133918, intron 6 of 7)	intron (NM_133918, intron 6 of 7)	-1525.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	4.0400699116067	4.06344838251873	4.10704011954352	3.98683927689421	3.85026369615682	3.9352893415623	-0.440393816874894	0.370218632431755	0.754676791870979
Merged-chr19-5848233-4	chr19	5847751	5848751	+	939.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	7.57073792255105	7.84843512491578	7.68971946650728	7.46683647757032	7.7041585723536	7.7806300981763	-0.0776310102822438	0.742249844456407	0.935165347690577
Merged-chr19-6951617-4	chr19	6951115	6952115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007522, exon 4 of 4)	3' UTR (NM_007522, exon 4 of 4)	9053.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	6.90954448662136	7.17185079459185	7.27491894737877	7.13903183552883	7.00114495053212	7.51450720589609	0.157129375814218	0.565698794039639	0.86688237163883
Merged-chr18-82863203-4	chr18	82862726	82863726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	7329.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	4.43852939992887	4.27102621768489	4.42925801024398	4.49080720001511	4.14988978296573	4.65396318671747	0.146549673509304	0.75285608708854	0.938425517908624
Merged-chr13-49100599-4	chr13	49100093	49101093	+	995.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	47735.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	3.28769486915188	3.34007253443255	3.43164016135274	3.42193295082476	3.16907771415003	3.44850156514886	-0.0213032870000556	0.97221766028595	0.993868590220018
Merged-chr10-88676388-4	chr10	88675898	88676898	+	874.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011461, intron 5 of 5)	intron (NM_011461, intron 5 of 5)	6625.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	4.27490488533224	4.07152883093669	4.16015860296979	4.11281489586102	4.17019111745407	4.03555617829478	-0.168550664139388	0.723268394518457	0.929000340406704
Merged-chr2-129384108-4	chr2	129383532	129384532	+	857.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-12893.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	5.34189441946501	5.41551335129476	5.40865389241023	5.34632239471898	5.33722051742125	5.58364153918286	0.0582350780329664	0.862941712421602	0.968145666951861
Merged-chr2-164641318-4	chr2	164640823	164641823	+	934.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2521.0	NM_001012723	277345.0	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	4.53576828717088	4.17248034067616	4.4295840306452	4.70049920243378	4.70066250174228	4.70262236622021	0.774524562055772	0.0743674142764619	0.358722539542947
Merged-chr16-4308043-3	chr16	4307543	4308543	+	636.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 5 of 10)	intron (NM_009624, intron 5 of 10)	78814.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	3.18356208797496	3.65866765981427	3.3684901757859	3.41384308305851	3.02039890943708	3.38434351853987	-0.544368387608377	0.416502562951925	0.787429456923198
Merged-chr12-102379165-4	chr12	102378672	102379672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	60641.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.28203828049391	5.45114417809393	6.00741662265541	5.39998654202377	5.34924115184794	5.11403710745696	-0.590518584384789	0.130000049458465	0.482195010397444
Merged-chr5-32168664-4	chr5	32168176	32169176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32204.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.93831264465265	4.08780459589517	3.88027131684248	4.29904572468389	3.93286828653823	3.54373220122009	-0.0210903389828412	0.971111435214323	0.993718751783969
Merged-chr13-100676338-6	chr13	100675851	100676851	+	823.235718	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	6870.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	6.2935994476256	6.67315670136295	6.49054355409842	6.99970668378401	7.16786726584919	6.81807980083256	0.801606127370663	0.0036038678510209	0.04817198974261
Merged-chr5-124439790-4	chr5	124439281	124440281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030241)	promoter-TSS (NM_030241)	-149.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	6.55267927596825	6.55633039160871	6.73580506131993	6.95037933423192	6.91503833110936	6.83967103956294	0.460033309439185	0.0670356613529371	0.33846500666597
Merged-chr11-118363231-4	chr11	118362750	118363750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7839.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	7.31324874500422	6.99092384354054	7.15297689558706	6.69405651912653	6.77675166012654	6.20720793352785	-0.865333021925384	0.00300097848771598	0.0421372625727085
Merged-chr11-106821201-4	chr11	106820694	106821694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025481, exon 19 of 19)	3' UTR (NM_025481, exon 19 of 19)	31942.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	7.21305014645405	7.36783430187855	6.90788752780015	6.79807855380106	7.01144685191849	6.5693120484989	-0.55973308567636	0.0448765093925074	0.267125026161668
Merged-chr11-11554298-2	chr11	11553798	11554798	+	668.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	65032.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.43099205071151	3.37996428636347	3.41763449417611	4.20083917312418	4.27962304542393	4.18336154573675	2.80564551462253	1.27925513662526e-06	6.74124518102054e-05
Merged-chr13-119492301-2	chr13	119491801	119492801	+	987.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 1 of 3)	intron (NM_001177666, intron 1 of 3)	3441.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	3.53898851182092	3.60973550619324	3.3888264173819	2.9778938161909	2.95646317312656	3.29123013642218	-1.93231995592729	0.00436434533801756	0.0555847187360547
Merged-chr11-53430958-5	chr11	53430501	53431501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001326614)	promoter-TSS (NM_001326614)	-170.0	NM_001326614	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	8.35691041675672	8.60755723648731	8.16471117399699	8.29974877423705	8.482648435132	7.99201453147502	-0.15819051024432	0.525276746506359	0.848947780345372
Merged-chr12-33316008-4	chr12	33315514	33316514	+	891.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	13499.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.36877825974652	6.42956907082375	6.42483418411186	6.45459630974392	6.79251791362733	6.72066533774095	0.416192752130679	0.123607201437032	0.470544707581506
Merged-chr6-97305129-2	chr6	97304629	97305629	+	634.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 18 of 23)	intron (NM_145148, intron 18 of 23)	-52349.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.61698256400856	2.51031686352694	2.70392791888632	2.62294023928994	2.40494655338014	2.71653953908136	-0.155020157322149	0.84388818673733	1
Merged-chr6-17652327-4	chr6	17651799	17652799	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007604, intron 3 of 9)	ORR1E|LTR|ERVL-MaLR	15289.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.01945470958619	5.0678657475541	5.11609918376045	4.74432926927986	5.07445098619186	4.89998749920594	-0.310055635545563	0.417680983811733	0.788242482615651
Merged-chr7-80835480-4	chr7	80834982	80835982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-26626.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	7.82300620751272	7.73562339034063	7.37237186961576	7.83340250876909	7.94317367493986	7.55938282103253	0.185825910246745	0.463907882144467	0.816038286358001
Merged-chr10-127509124-4	chr10	127508604	127509604	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177707)	TTS (NM_177707)	-5835.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	2.21248923784153	2.11209435502358	2.33517125750157	2.06693063926598	1.98408743793817	1.9494414518063	-1.77803077172403	0.068911181471844	1
Merged-chr3-152428757-4	chr3	152428235	152429235	+	957.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	32051.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.25747502665821	5.2715377937268	4.52845927882373	4.77393477692785	4.42220296786046	4.81408411694978	-0.882678088767054	0.0544080124159454	0.299575297585097
Merged-chr6-135184003-4	chr6	135183499	135184499	+	951.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-4481.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	3.78537684844375	3.68735069507106	3.79802044757825	4.9817261381522	5.24548744476492	4.67857996850577	3.50641457587296	5.03348297978319e-11	7.14720224883617e-09
Merged-chr5-114783856-4	chr5	114783348	114784348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	8708.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	3.52611379508157	3.64187081631589	3.54887253937843	3.89887484255961	3.80319456414924	3.4448372039301	0.551279287746501	0.338850078692982	0.728835613269201
Merged-chr11-69666232-4	chr11	69665733	69666733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-63.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	7.52749914348956	7.51181803475573	7.50278540381053	7.64423069402168	7.72137571992944	7.45626330677118	0.151934004383117	0.500786385039513	0.835242909787083
Merged-chr9-40563578-9	chr9	40563027	40564027	+	950.9111330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32144.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.47274482543249	4.43246425901074	4.60402520913108	5.2176990176007	5.17366326554047	5.01918322374896	1.471132838803	0.000181410977557427	0.00462039933290432
Merged-chr10-95262612-3	chr10	95262106	95263106	+	671.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	61103.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	5.64421868355986	5.51425727389816	5.47283985628909	5.92298354647857	5.91724698909941	5.7627268250305	0.59186096871936	0.0583965370327879	0.312359157458486
Merged-chr3-8736177-4	chr3	8735693	8736693	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69155.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	5.50308114616992	5.35393222824108	5.21359914039306	5.23952942777836	5.30717098100884	5.02978523667984	-0.324881227274429	0.364751521779158	0.750028369485675
Merged-chr1-74384705-2	chr1	74384205	74385205	+	756.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 13 of 15)	exon (NM_013612, exon 13 of 15)	-6904.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	3.34130974809614	3.10873073463664	3.44916921971585	3.2681720069167	3.1332907087147	3.51894874976747	0.0260256563173756	0.967711268191011	0.992594535508871
Merged-chr18-90510135-4	chr18	90509652	90510652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-2.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	7.05539812684001	7.55705583306117	7.22816770305649	7.26241177625339	7.63506457473715	7.43116358730435	0.227167302545501	0.397563825216657	0.774485045113678
Merged-chr12-102877586-6	chr12	102877095	102878095	+	968.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172806, intron 1 of 11)	CpG	811.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	6.34489206593589	6.18109964600974	6.21176268031018	6.45186523090654	5.85965198143771	6.23094803756659	-0.0854561912541209	0.785245614853698	0.947850129107983
Merged-chr3-55120651-2	chr3	55120151	55121151	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 2 of 8)	intron (NM_001144987, intron 2 of 8)	8485.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	2.55248194125866	2.71790666993552	2.7007647578076	2.82711450616762	2.74189889737201	2.8960079017389	0.859607311612013	0.245239458180049	0.642381314494918
Merged-chr19-61265918-2	chr19	61265418	61266418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37500.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.81604519441369	6.38099445087332	6.11540409341474	5.7922018081339	6.21321692644363	6.21720546520665	-0.0656187901558556	0.84429330636552	0.96373428957366
Merged-chr15-76350174-3	chr15	76349663	76350663	+	907.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025340, exon 2 of 9)	exon (NM_025340, exon 2 of 9)	947.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	6.76613638970114	7.1002610573406	7.06150236986965	7.20016935967669	7.23177391827047	7.04057881554322	0.276324464101367	0.274923816189321	0.672305322326487
Merged-chr8-68993409-4	chr8	68992946	68993946	+	918.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95290.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.45600050486016	5.3874918062041	5.34847624518248	4.76258460758655	4.65250933183426	4.56425005872189	-1.58270603688629	3.17116781123272e-05	0.0010800922277407
Merged-chr16-10433528-4	chr16	10433037	10434037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	5.77409705683812	5.55296112726935	5.98904760824099	5.77130420784988	5.73391537213638	5.7938954870816	-0.0148074177761802	0.963196822480232	0.991082197093192
Merged-chr2-119113405-2	chr2	119112905	119113905	+	690.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011234, intron 1 of 9)	intron (NM_011234, intron 1 of 9)	588.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	3.74995670043458	3.4922636136251	3.67455791102117	4.13355878490926	4.0301190945838	3.80137602518899	1.15175674699553	0.0339055151506726	0.225258719154291
Merged-chr3-9035561-2	chr3	9035061	9036061	+	886.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26403.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	3.40591291941088	3.28907183593276	3.6690889156425	3.82362056339269	3.8364095301791	3.93492593208115	1.43689604939049	0.0122052364203838	0.115576796639046
Merged-chr5-140349248-3	chr5	140348793	140349793	+	753.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 7 of 10)	B1_Mm|SINE|Alu	17337.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	3.95367540790552	3.91313062664206	3.98525536466839	3.47270931849739	3.54663303929104	3.70994684389082	-1.26313277889816	0.0203308091789391	0.163242880455579
Merged-chr5-121585752-2	chr5	121585252	121586252	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	8072.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	5.32891617892605	5.65741812576528	6.09766971329694	5.79339139744956	5.89381810009894	5.92331420200235	0.269224759014856	0.449891044953754	0.808013574003465
Merged-chr13-100451335-4	chr13	100450812	100451812	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	ID_B1|SINE|B4	1552.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.45734175680379	4.60735913631764	5.00857004434319	5.73970139267603	6.03469605366816	6.02451135016544	2.53897069361402	3.31331249760955e-11	4.87092060602642e-09
Merged-chr13-101768284-4	chr13	101767777	101768777	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-60.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.69550027631614	7.35605737391362	7.20774816396615	7.55173052118277	7.32432612163679	7.09641350963298	-0.147730795235394	0.584612639290468	0.874617003309743
Merged-chr7-35086042-2	chr7	35085542	35086542	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-29476.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.1913171788238	5.19441878090639	4.61469907820421	4.38762416568502	4.43457083128972	4.35644001769264	-1.50776067366105	0.000668108231098267	0.0132141549068753
Merged-chr8-124897861-4	chr8	124897370	124898370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	-16.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	6.78145374514895	6.86420189227944	6.83026210681145	6.72107088853956	6.70352517911222	6.51127285951186	-0.266606521853787	0.293599637370782	0.690424156263798
Merged-chr13-23730639-3	chr13	23730129	23731129	+	843.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8178.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	4.53354705868488	4.49444383689013	4.90173465864256	5.22567130130155	5.57674114709433	5.52643287998819	1.74535409562606	9.50598618163769e-06	0.000383038304213902
Merged-chr18-38911953-1	chr18	38911453	38912453	+	568.0	f0_balb.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	6746.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	2.86265231351725	2.90548721866417	3.07533243442295	2.8752550752682	2.87099298420329	2.85236968881304	-0.386394708645977	0.577825358196834	0.87219514592351
Merged-chr2-79132388-4	chr2	79131871	79132871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123055.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.82534122288342	7.65580382814555	7.55810672107781	7.55780895672485	7.73595540716417	7.67151353096789	-0.0439331560753958	0.846844529378143	0.964111312125802
Merged-chr10-68247383-3	chr10	68246889	68247889	+	718.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	31337.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	5.18310234683252	5.01942116851354	5.29793599500289	4.77352953623391	4.54421595813472	4.83233247002394	-1.00282761366835	0.0106897053872166	0.105346244913753
Merged-chr19-40626269-4	chr19	40625769	40626769	+	902.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MA4|LINE|L1	13903.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.95616037307566	5.59199972609544	5.53522500862594	4.88737435923129	5.29218582826375	5.00110237751336	-1.22708348347977	0.00125024013686613	0.0214362211638898
Merged-chr17-36123667-3	chr17	36123216	36124216	+	913.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2272.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	2.97947098496535	2.94629265412941	3.19718909664095	4.53307536540499	4.38676851770181	3.8458206813714	7.68573789938004	1.25495055073954e-09	1.36143318677882e-07
Merged-chr10-128781233-4	chr10	128780734	128781734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9676.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	6.73800954114109	6.81014148261424	6.45258517919084	6.42277013890113	6.57642162619586	6.0588153850676	-0.477598288990525	0.109962587630928	0.443259712798868
Merged-chr5-30950039-4	chr5	30949574	30950574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003522)	promoter-TSS (NR_003522)	8.0	NR_003522	57742.0	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	5.93165608408943	5.66038649060684	5.93869608335588	5.94206932408958	6.08827584204893	6.11033367613432	0.357152899657587	0.239234154258024	0.636041649599057
Merged-chr11-86994423-2	chr11	86993923	86994923	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-661.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	5.45586681077288	5.49879560100258	5.54916120849274	5.55745818375693	5.56113454940953	5.76807822207667	0.237309343608212	0.46232318621745	0.815159087955196
Merged-chr1-136559012-4	chr1	136558523	136559523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65878.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	5.18825754400226	5.08098872164324	4.87530958793424	5.75974862893244	6.06201702664268	5.65532706048924	1.50051744338041	2.91966152627549e-05	0.00100524848852306
Merged-chr16-8638345-2	chr16	8637845	8638845	+	648.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025708)	promoter-TSS (NM_025708)	638.0	NM_016881	54128.0	Mm.9699	NM_016881	ENSMUSG00000022711	Pmm2	AI585868|C86848	phosphomannomutase 2	protein-coding	6.14326132842004	6.12905758349666	5.87208816822698	6.14199777481794	6.13696421359513	6.28944620696891	0.207562350530984	0.475953180201726	0.822255465040802
Merged-chr11-20632459-4	chr11	20631951	20632951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038625, intron 1 of 1)	CpG	474.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	8.66258591641293	8.80518310777954	8.5101175617356	8.47955518057664	8.71111051446898	8.53303872853645	-0.121157276131288	0.571371473719547	0.869471060447258
Merged-chr7-102035179-2	chr7	102034679	102035679	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 4 of 8)	B3|SINE|B2	-17024.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	2.66343908679702	2.5907939749284	2.7275139809213	2.70501068765841	2.63059547186145	2.86018314006529	0.385768531165137	0.603271942681945	0.882544198306255
Merged-chr5-143652035-4	chr5	143651566	143652566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163548, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	825.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	4.29624592658722	4.05435329584914	4.04653164671805	4.09472509073528	4.05227029357771	4.1157114358762	-0.161314213838466	0.73777079067199	0.933858424870961
Merged-chr5-76189978-1	chr5	76189478	76190478	+	575.0	f0_balb.idr	intron (NM_011626, intron 1 of 5)	intron (NM_011626, intron 1 of 5)	6098.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	3.19083750232114	3.37105665136127	3.2094231182111	3.01079098934074	2.88043614569155	3.16644851418322	-1.09845013416885	0.101621937210555	0.425254382992147
Merged-chr8-71908703-4	chr8	71908229	71909229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001166645, exon 1 of 3)	5' UTR (NM_001166645, exon 1 of 3)	123.0	NM_001166645	382019.0	Mm.251482	NM_001166645	ENSMUSG00000089857	Zfp882	Gm15468	zinc finger protein 882	protein-coding	6.59766357352684	6.84877521157303	6.87752593763055	6.90683844059384	6.88375578154818	6.8191871985139	0.148468794320664	0.560000501802161	0.865168019835518
Merged-chr2-26315551-4	chr2	26315028	26316028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199146)	promoter-TSS (NM_001199146)	-5.0	NM_001199146	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	4.04995518799682	3.62171095434145	4.16955283745858	3.77516806681992	3.61898366663997	3.82280901937638	-0.710619988964381	0.204062378540953	0.594316499602228
Merged-chr15-98868411-2	chr15	98867911	98868911	+	587.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	2794.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	3.75917672766438	4.03614707451207	4.17222946422492	4.33539217215138	4.09520633761035	4.52796530670941	0.922076087204095	0.0700230037793598	0.346464069471806
Merged-chr4-3648444-4	chr4	3647935	3648935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8071.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.79810213762543	7.77405238896163	7.49101739594784	7.84152180535379	8.17181899435312	7.73348779289993	0.338269661314967	0.172259801304539	0.550849140713641
Merged-chr10-128489646-4	chr10	128489151	128490151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001114096, exon 29 of 29)	3' UTR (NM_001114096, exon 29 of 29)	3358.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	6.3117426350907	6.34695155021306	6.51213196455076	6.17393685255605	6.57136157751738	6.484694454238	0.06099760136882	0.830872799086487	0.960370002015736
Merged-chr5-107901632-2	chr5	107901132	107902132	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016980, intron 1 of 7)	intron (NM_016980, intron 1 of 7)	1104.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	5.15461418001581	5.31842365148074	5.58679437960121	5.72238238861009	5.56149184150631	5.22464608373637	0.332032739494913	0.363780640150041	0.74933829766087
Merged-chr11-89006040-4	chr11	89005518	89006518	+	604.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	6615.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.85758381045433	4.72413978363629	5.28739735597515	4.62589830102731	4.72399966812205	4.76543888971263	-0.586652441600666	0.163412439573092	0.537242865848567
Merged-chr2-165883140-4	chr2	165882638	165883638	+	978.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-860.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.84710600545361	7.81680841071487	7.73248665191121	7.89248635630186	7.86292829622743	7.54159291079616	-0.027857827073929	0.903395197099458	0.977827650905621
Merged-chr10-118141745-4	chr10	118141238	118142238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010785)	promoter-TSS (NM_010785)	-49.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.56120523053393	5.24506660414414	5.26666213667597	5.03611641388048	4.87939314626474	4.86883128805801	-0.912506974100171	0.0140933125701679	0.127402351625295
Merged-chr7-120873136-3	chr7	120872640	120873640	+	977.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	21951.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.52473524387327	3.31067163362045	3.3450338801797	3.32694681258016	3.35649240762444	3.41649814831492	-0.130722850412193	0.827122881646519	0.959351941492659
Merged-chr17-87298652-2	chr17	87298152	87299152	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	15766.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.42639690173719	3.53904577118707	3.57027542457068	3.30114607548664	3.34535816195356	3.58847051105083	-0.37754829653018	0.522679629148355	0.847682942091387
Merged-chr17-36035485-2	chr17	36034947	36035947	+	939.541626	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-2746.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	2.60521445638938	2.53099115531645	2.84505056781048	2.44456673583587	2.51541833818047	2.80220406870419	-0.394424756702901	0.621608788041746	0.890824801601999
Merged-chr3-27691065-2	chr3	27690565	27691565	+	754.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	19387.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	6.33542276786521	6.46744646757203	5.90434167390086	6.08860142710357	6.2751123380864	6.06496938418607	-0.198342979345372	0.524411768343257	0.848678125006852
Merged-chr4-86648623-1	chr4	86648123	86649123	+	885.25	f0_balb.idr	Intergenic	Intergenic	21436.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	2.69666847064624	2.59017138391783	2.78794329240156	2.50757709248885	2.73275438424331	2.8601004841386	0.0795748261957357	0.917281263485973	0.981588017376699
Merged-chr7-83843001-3	chr7	83842487	83843487	+	786.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41354.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	3.08802429994949	2.87067045488111	2.95595249035731	2.86830429154488	2.76098533813663	2.84514082891657	-0.754006927226853	0.284904389909297	0.682510637288327
Merged-chr9-108990041-6	chr9	108989413	108990413	+	860.111145	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1989.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	4.40406925762897	4.57580359743434	4.73721591064661	4.22133793729911	4.23056400159424	4.32437846495603	-0.817615213092985	0.0676440202004899	0.340276998077273
Merged-chr8-90834201-4	chr8	90833783	90834783	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	5448.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.65758518163597	4.60473908396983	4.76386481026496	4.91460761706701	5.17877844646025	5.113675775579	0.904077537357417	0.0198633976239284	0.160668182122274
Merged-chr5-110211500-4	chr5	110211005	110212005	+	730.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347389, intron 17 of 23)	MTB_Mm|LTR|ERVL-MaLR	-19499.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	2.88142485992723	3.08051044405655	3.55459528000313	3.21987725392668	3.0448248189191	3.32069047740996	-0.00411944283100356	0.99537636356406	0.998961028701257
Merged-chr19-40994867-3	chr19	40994358	40995358	+	609.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008528)	promoter-TSS (NM_008528)	-323.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	4.92476700383197	4.84915987031854	4.50229920299658	4.96410757919685	4.77473449183059	4.32617349922805	-0.126028326552593	0.783898708613507	0.947360539866523
Merged-chr2-166994765-2	chr2	166994265	166995265	+	758.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	1534.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	4.74691060511499	4.84747513859094	4.48959313669317	5.1960791609771	4.91717713476401	4.93387051750456	0.681766667741366	0.0951128146705968	0.411148363215922
Merged-chr17-29090860-2	chr17	29090315	29091315	+	750.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111099)	promoter-TSS (NM_001111099)	-164.0	NM_001111099	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	2.91034199299472	2.80302873275583	2.91459396583466	2.87196982265609	2.72227013116632	2.86673768984827	-0.287785331428725	0.683528575643811	0.915479407206029
Merged-chr2-31785258-4	chr2	31784750	31785750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	25077.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.2047293765725	4.02530596457271	3.7337760211726	3.96751903349701	3.96429193215194	3.91483472094448	-0.18390430187	0.724846062820905	0.929475409375828
Merged-chr10-128034949-2	chr10	128034449	128035449	+	805.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113199)	promoter-TSS (NM_001113199)	-397.0	NM_013608	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	7.36645064592549	7.84981350446312	7.47716122801331	7.52226793661746	7.85938729041553	7.37114797586698	0.0335104924547299	0.90203920789127	0.977392189525306
Merged-chr3-20423086-4	chr3	20422573	20423573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55896.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	5.47680151135984	5.86992949340437	5.69975967465851	5.72527238916884	5.71467214083617	5.7355722042556	0.054870032888743	0.865442787930835	0.968641478520565
Merged-chr4-46389864-4	chr4	46389379	46390379	+	870.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-442.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	7.92102526541497	8.1736574595821	7.7945048852456	8.01668541006215	8.40578477270474	7.70519550223821	0.152359889726705	0.575403468601659	0.871089076039513
Merged-chr5-28070320-2	chr5	28069820	28070820	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1092.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	6.41725226856802	6.45414599702115	6.03367093278955	6.24575313962268	6.13702167665021	5.63042528375605	-0.470200703463643	0.158279040290935	0.530002962906299
Merged-chr1-36557778-13	chr1	36557248	36558248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304330)	promoter-TSS (NM_001304330)	-191.0	NM_001304329	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	7.45161577663438	7.47897134622386	7.87073089534609	7.64305572824149	7.74927753505874	7.78468626371981	0.172754336916513	0.475218262550976	0.821758256966855
Merged-chr2-26962220-2	chr2	26961720	26962720	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_207234, intron 2 of 7)	L2a|LINE|L2	2166.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	4.25956011387522	4.01608235538897	4.39458369743721	4.3733806706055	4.53119313334761	4.54296626899104	0.685212312763701	0.135355926828155	0.491563196557138
Merged-chr7-81343566-2	chr7	81343066	81344066	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009092, intron 4 of 4)	intron (NM_009092, intron 4 of 4)	1668.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.96211468305565	3.81533690074703	4.13592883373012	3.78160915369834	3.56018841254902	4.20265371330969	-0.327055152929778	0.562694330223427	0.865755360453189
Merged-chr5-72820802-4	chr5	72820298	72821298	+	958.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47650.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.69646268139256	5.70272264786792	5.96350985618361	5.41018231764857	4.95372916287537	5.5123104806385	-0.926847347246075	0.0108126801958383	0.106171995956492
Merged-chr18-37955590-4	chr18	37955103	37956103	+	958.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	44.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	5.50095249274267	5.68692943470375	5.57468598590985	5.63340941520364	6.01274780968208	5.96549418479177	0.529737589981647	0.102754549625833	0.427448179248844
Merged-chr18-44782605-2	chr18	44782105	44783105	+	772.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085373, intron 1 of 18)	MTD|LTR|ERVL-MaLR	29577.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	3.31920585250767	3.54849222850168	3.7565128404489	3.62539165201756	3.53443681239965	3.67702921672542	0.226561938615162	0.697443326802824	0.919959169598449
Merged-chr7-119794186-6	chr7	119793712	119794712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027698)	promoter-TSS (NM_027698)	25.0	NM_001004187	434234.0	Mm.38237	NM_028129	ENSMUSG00000030924	Rexo5	2610020H08Rik	RNA exonuclease 5	protein-coding	5.26653068800788	5.28844309651002	5.40065785563954	5.51683842619169	5.4400889158256	5.10062356748802	0.119140553557757	0.736261934794003	0.933099240232035
Merged-chr13-21158986-4	chr13	21158486	21159486	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15931.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	3.04839920674929	2.80060859143008	2.65602947485653	2.77998993043081	2.74653256616843	3.04031789378918	0.043009016878626	0.954710431548148	0.989617250984245
Merged-chr12-28732770-4	chr12	28732285	28733285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	17609.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.73447090726631	6.8141881179036	7.08284417704278	7.19673497421458	7.49812347953899	7.00908163346341	0.579517173079454	0.0327272245829367	0.220267483870986
Merged-chr10-13090847-6	chr10	13090243	13091243	+	761.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131912)	promoter-TSS (NR_131912)	-45.0	NM_009538	22634.0	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	3.10173187938476	2.66282477861252	2.99718982499074	2.89526412057559	2.71315402722877	2.89091280479087	-0.490039719714424	0.510922693407076	0.841230434419772
Merged-chr14-31608546-2	chr14	31608046	31609046	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31163.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.36066001028539	5.49636455147154	5.55779903240537	5.71169654645188	5.82550499457735	5.87605882970165	0.621822852476773	0.0501905555338175	0.285159854855906
Merged-chr3-89213974-4	chr3	89213473	89214473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013604, exon 1 of 8)	exon (NM_013604, exon 1 of 8)	362.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	8.56148559662699	8.45375875538702	7.86014842967404	8.01354668886085	7.95179190037905	7.73229192864525	-0.609333329045692	0.0229302463431022	0.17684492888283
Merged-chr9-40732543-3	chr9	40732032	40733032	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	46568.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	6.4390813604291	6.04795066385229	5.98246134997643	4.07409403745582	3.64609054780294	4.32464500214828	-6.48566144289975	6.74613235521891e-17	2.69871240871661e-14
Merged-chr1-152796981-4	chr1	152796461	152797461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3192.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	6.97273220868326	6.77105150228085	6.77492276775848	6.73653420794377	7.14806391869364	6.75477072490925	0.0924713951239421	0.73448457738668	0.932469640609556
Merged-chr12-100166404-4	chr12	100165910	100166910	+	774.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-6757.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	2.94425396247089	3.16303387853668	3.53567816806377	3.11331282711922	3.04064338098173	3.50720499208359	-0.00156746601223848	0.9982286557079	0.999590080903912
Merged-chr2-150834092-3	chr2	150833605	150834605	+	571.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	8465.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	2.80727561598563	2.99034774054927	3.05339108823336	2.75914310934797	2.77187934204936	2.89271561214986	-0.725463471728716	0.30778229418424	0.703860357236263
Merged-chr4-126181324-3	chr4	126180826	126181826	+	829.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 3 of 11)	intron (NM_001356455, intron 3 of 11)	-17985.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	3.79115729411759	3.37381399850731	3.50759025040663	3.35091148585723	3.83396479134925	3.68686149239389	0.243930543863056	0.692888358302658	0.91880752705484
Merged-chr18-39487040-3	chr18	39486504	39487504	+	707.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008173, exon 1 of 8)	exon (NM_008173, exon 1 of 8)	241.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.88938863818375	3.87330686813319	4.00038850844533	4.13238570170122	4.31177610460824	4.50173062152362	1.14785071400138	0.0186383652972808	0.154329893487525
Merged-chr15-50819996-3	chr15	50819481	50820481	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69068.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.93422060079327	6.79523453698344	6.48190440281772	6.21016720664493	6.32043578929389	6.22163744910761	-0.813461939501634	0.00379439000450148	0.0499882131586762
Merged-chr15-25827470-2	chr15	25826970	25827970	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-15828.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	3.42320028170749	3.4575089370502	3.34530300577854	3.61515489438371	3.26690895184198	3.17419162390903	-0.162048980747427	0.796826789654209	0.951540680890061
Merged-chr9-59567323-4	chr9	59566811	59567811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11026.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	3.11346057319206	2.83398012384894	2.98122685362614	2.89179515108766	2.75365871215108	2.99459653149489	-0.498976574057139	0.481169890790912	0.824953741430059
Merged-chr19-56673151-4	chr19	56672627	56673627	+	957.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-49245.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.90388504272995	3.85540558344285	3.89659960743581	4.03546905092797	3.8106082394911	4.32382961282571	0.531626039682468	0.308844038744298	0.70476767553933
Merged-chr17-26973119-4	chr17	26972626	26973626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005916)	promoter-TSS (NM_001005916)	-53.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	6.61950319124308	6.72912934627868	6.73594888313093	6.54598718547454	6.5865222042392	6.18378377279896	-0.36729770453333	0.184239475820287	0.567869251150334
Merged-chr9-48561086-3	chr9	48560572	48561572	+	925.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44051.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	4.41011863800831	4.42919619521635	3.76392073868612	3.27201637377015	3.44840432047608	3.40936484277914	-3.01365466356723	6.51972743517973e-06	0.000278059190377465
Merged-chr17-24895206-4	chr17	24894735	24895735	+	978.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163102)	promoter-TSS (NM_001163102)	115.0	NM_023260	79044.0	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	6.08724351131457	6.41877758041235	6.63795275299529	6.12818060372488	6.34083723916578	6.10840106194709	-0.312597027027588	0.309011242841432	0.704802606494279
Merged-chr5-120778989-2	chr5	120778489	120779489	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1330.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	3.01106517458885	2.82869863250388	3.39757354074013	3.38621326573316	2.93560804682329	3.07938671855301	0.214398985859742	0.768938145111014	0.942983923980385
Merged-chr19-3998808-2	chr19	3998308	3999308	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001320, intron 7 of 7)	intron (NM_001001320, intron 7 of 7)	-1772.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	2.61399097994511	2.48097673705751	2.57073633799499	2.3015383284038	2.37674119676251	2.31961275573429	-1.4261452247576	0.0912825477632713	1
Merged-chr3-98129033-3	chr3	98128535	98129535	+	893.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 22 of 33)	intron (NM_010928, intron 22 of 33)	-31599.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	4.70014685995101	4.63221234044467	4.39708343284769	4.48577946722943	4.25582376649293	4.46524178217851	-0.48022292032903	0.275035822436059	0.672401372506524
Merged-chr5-8351477-4	chr5	8350974	8351974	+	953.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	16686.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	4.81924066384906	5.2308763936415	4.92520480740667	4.50088812180869	4.76814678174682	5.0917573845168	-0.45671290265784	0.287070559601296	0.684323804399215
Merged-chr11-83220906-2	chr11	83220406	83221406	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2670.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	3.51611905169922	3.57218716895679	3.6064452205624	3.50235590303655	3.40360982535563	3.46156352849468	-0.403109538211403	0.478806989459555	0.823891137932924
Merged-chr5-112273146-2	chr5	112272646	112273646	+	757.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3545.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	2.72969108266802	2.71969772886083	2.60101986698462	2.89927210682137	2.79707851843085	2.92813804860414	0.961352093535544	0.191096282480172	0.577704529596358
Merged-chr5-105561117-2	chr5	105560617	105561617	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	41646.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.49017562201032	3.55492652616839	3.47811266698309	3.49352089295006	3.63468674137113	3.65571911704256	0.309444758028024	0.582659440096426	0.873826743013405
Merged-chr15-76626996-4	chr15	76626497	76627497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-913.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	7.3764921625348	7.52046032361569	7.84858815832099	7.16320142570903	7.52530831399613	7.42773491897698	-0.303940802166286	0.243958475218036	0.641102368207187
Merged-chr7-127588670-4	chr7	127588187	127589187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	-11.0	NM_172281	233900.0	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|BRE1-B|mKIAA0661	ring finger protein 40	protein-coding	7.31061212236427	7.21000755847728	6.74852771414414	7.09308103471935	7.42001730413372	7.24227737929746	0.208035674329353	0.450471832087599	0.808395199265533
Merged-chr10-80040509-2	chr10	80040009	80041009	+	824.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-850.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	4.22986988729847	4.45477078773041	4.50777825456674	4.28445936680258	4.64427112682062	4.65242741360206	0.351701037648849	0.436130164474484	0.799461119181469
Merged-chr19-40722415-3	chr19	40721859	40722859	+	888.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	62589.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	3.52178759894405	3.59245111703922	3.94008981400743	3.43028586752063	3.63956981868922	3.72619964048543	-0.295030415956365	0.611478928011564	0.886122918847711
Merged-chr6-42351620-2	chr6	42351120	42352120	+	984.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011777, exon 5 of 10)	exon (NM_011777, exon 5 of 10)	1792.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	6.06732757304058	5.95777766151124	5.80397155139874	5.97266836375787	6.2069942639161	6.52161264817176	0.496609640682352	0.115720314779458	0.454101449785855
Merged-chr13-53377896-1	chr13	53377396	53378396	+	838.0	f1_balb.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-535.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	4.51189849263274	4.40362862383667	4.73816858333133	4.80726975292729	4.58157664546677	4.8032912443008	0.431719585737801	0.306922505213545	0.703091920100449
Merged-chr1-80716200-4	chr1	80715700	80716700	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42353.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.4824603064983	4.28132488733416	4.28545528328151	4.29338340803057	4.10307298545642	4.48125873827072	-0.174245389351047	0.708016590423846	0.923606271223831
Merged-chr16-93081755-4	chr16	93081246	93082246	+	635.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-255672.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.65464395985776	2.61213819071453	2.4847229090873	2.70578865385073	2.47768746922326	2.92355858009378	0.6772596133276	0.399996110453739	1
Merged-chr7-98339231-4	chr7	98338724	98339724	+	972.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18016.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.28027626380182	6.00004857831526	6.19410554803262	5.80888368446417	6.3088622130466	6.17170667885026	-0.0724208142086702	0.817499428876723	0.956767881392089
Merged-chr15-57838908-2	chr15	57838408	57839408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199449, exon 4 of 4)	3' UTR (NM_199449, exon 4 of 4)	53510.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	2.70772487491091	2.96402372379216	2.71139122374295	2.75024840683088	2.53042547078273	2.84735938440356	-0.483256282427656	0.529422199965172	0.850904712036958
Merged-chr10-94487108-5	chr10	94486553	94487553	+	810.233337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-27804.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.45486841347355	5.73915310807901	5.55358479114764	5.07433961518409	4.97220388503026	5.08658139631172	-1.1018139315206	0.00167315090636804	0.0269127277434896
Merged-chr11-58914880-2	chr11	58914387	58915387	+	751.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3170.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	2.98740319317068	3.00095763654198	2.9760783312182	2.95859229098101	3.27184892135352	3.22409043915849	0.765139012460424	0.254410030311388	0.651412431982951
Merged-chr18-9507902-3	chr18	9507385	9508385	+	780.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57731.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.42151761257977	4.43059881419096	3.9906343397091	4.39388491197448	4.50770264192938	3.76773187302238	-0.0843468073744039	0.88298921145084	0.973343819056613
Merged-chr13-112801516-3	chr13	112801020	112802020	+	868.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	743.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	4.74358755077909	4.87334333444293	4.93570399249773	5.05558212842352	4.70590083184315	4.77677590789918	0.0100070078204243	0.980014877192622	0.995416130723271
Merged-chr1-179561247-4	chr1	179560765	179561765	+	688.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	14736.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	2.48492591038654	2.60596678728144	2.48259492820232	2.63870536120407	2.41042704302494	2.7455949803642	0.420171849943526	0.598866766781496	1
Merged-chr4-88710972-2	chr4	88710472	88711472	+	699.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11536.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	4.84898669367152	4.93499468739904	5.1045369501063	4.93632262190764	4.67876357519114	4.96769893706477	-0.226158411705263	0.564418148602279	0.866344709792103
Merged-chr5-120749375-2	chr5	120748875	120749875	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347448, intron 1 of 11)	intron (NM_001347448, intron 1 of 11)	473.0	NM_145227	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	6.88012536433459	7.24256112171235	7.0207614701434	6.92445992890777	7.32656298228537	7.19242643540703	0.155043235741307	0.560342943023672	0.865206445804495
Merged-chr3-106722186-4	chr3	106721685	106722685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028081, intron 1 of 2)	CpG	503.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	8.98407327297154	9.38798080581175	8.60273161493329	8.81474644189346	9.25250241280254	8.57065456629643	-0.16442907657781	0.573219412911153	0.869962295500663
Merged-chr2-158166772-4	chr2	158166277	158167277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20385.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.99254993397509	7.92269012101854	7.55303149653288	7.87485134819496	8.12600010361036	7.52609610768022	0.0454335057530325	0.865687540003689	0.968641478520565
Merged-chr11-106098470-3	chr11	106097939	106098939	+	769.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	13537.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	5.9731736841292	6.04728980627822	6.34717470272259	6.32300579797244	6.69358368180791	6.69187167586374	0.755964459224619	0.0108418147240205	0.106375923753756
Merged-chr11-109471496-3	chr11	109471020	109472020	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	1709.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	6.13790259512621	6.05293521088806	6.12048504166654	6.50714564716759	6.55820559335345	5.80604300674673	0.408123046813127	0.216612021996378	0.610088638224921
Merged-chr2-84714295-3	chr2	84713802	84714802	+	847.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144887, intron 1 of 11)	intron (NM_144887, intron 1 of 11)	862.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	6.44851418416927	6.34513066203716	6.87706656158975	6.55950816081357	6.6237408069515	6.59145449970355	0.0435642324156593	0.879382203306117	0.972083703102674
Merged-chr13-37489466-3	chr13	37488986	37489986	+	967.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	144141.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.49007402747542	3.32064216325039	3.67091929713206	4.7548860033602	4.73525611056247	3.98245437378182	3.41082761332376	4.42704457805284e-08	3.47187111452046e-06
Merged-chr11-114912584-2	chr11	114912084	114913084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21802.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	4.57597734203844	4.06239315774387	4.1810923975891	4.40078895623225	4.27064240074292	4.34319911328195	0.101885704458446	0.832926555191002	0.960877229430081
Merged-chr9-107597689-4	chr9	107597193	107598193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_111986)	TTS (NR_111986)	7709.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	4.81045534337208	4.77925977226911	4.91426066881247	4.76358602582687	4.98242174050868	4.97868582804748	0.18328523005769	0.635289988999209	0.896469311207241
Merged-chr16-25042150-4	chr16	25041660	25042660	+	896.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17479.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	3.83772286962862	4.03237966463054	3.98936837725604	3.76701469828372	3.49032301910567	3.86590089728416	-0.801406513086366	0.140971196515809	0.501640878883247
Merged-chr10-123187124-3	chr10	123186594	123187594	+	823.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301628, intron 1 of 20)	intron (NM_001301628, intron 1 of 20)	9925.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	3.31632799945257	3.28853468984068	3.23105691891475	3.3339555280404	3.31803430015392	3.86509129534669	0.909948233561925	0.154466145861782	0.523813794060689
Merged-chr9-45984827-4	chr9	45984348	45985348	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357246)	promoter-TSS (NM_001357246)	23.0	NM_001357246	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	7.41183374341421	7.61996948111886	7.51826700667633	7.75925741900714	7.58247360837774	7.39668194180318	0.105554347966359	0.656694064929882	0.904693205515276
Merged-chr14-31323953-4	chr14	31323441	31324441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033668)	promoter-TSS (NM_001033668)	-45.0	NM_001033668	110084.0	Mm.101811	NM_001033668	ENSMUSG00000019027	Dnah1	B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7	dynein, axonemal, heavy chain 1	protein-coding	4.59919892018437	4.35895943215705	4.76747290597901	4.35441697999	4.51595600690446	4.52912291280342	-0.269376300033859	0.541423036876037	0.85683609213704
Merged-chr3-148867776-1	chr3	148867276	148868276	+	765.0	f0_balb.idr	intron (NM_001081298, intron 2 of 23)	intron (NM_001081298, intron 2 of 23)	86859.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.28701579592493	2.14454726524447	2.38057839427411	2.38467219976867	2.42060129871667	2.58008520282768	1.26603644281887	0.140185299195807	1
Merged-chr1-74383449-2	chr1	74382949	74383949	+	786.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013612, exon 10 of 15)	exon (NM_013612, exon 10 of 15)	-8160.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	3.66884867994388	3.25274567999496	4.00218313708173	3.97289150515619	3.66448526823418	4.11362012846021	0.801929792701712	0.203630774298384	0.593766101339359
Merged-chr5-31814241-4	chr5	31813757	31814757	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 4 of 11)	intron (NM_144541, intron 4 of 11)	116207.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	3.40675513515092	3.43651684751745	3.79844828881614	3.50232454659652	3.38844843787685	3.86630496098677	0.146296531404642	0.810180574295972	0.954976703432846
Merged-chr13-111490022-4	chr13	111489543	111490543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	84.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	8.69327755922384	8.56439021556183	8.34986505883584	8.5216793566722	8.46378124258753	8.35680254268768	-0.135294987731523	0.529270548801909	0.850847288056475
Merged-chr9-108305433-2	chr9	108304933	108305933	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016802)	promoter-TSS (NM_016802)	726.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	6.82032683815086	6.94877611417291	6.90006555298651	6.86624934419362	7.0044707130376	7.20065021637994	0.206612158010455	0.41135674882906	0.783877099438722
Merged-chr2-131210421-4	chr2	131209879	131210879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291032)	promoter-TSS (NM_001291032)	19.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	8.8671986421912	9.01932429602658	8.56497295590144	8.74839374409504	9.21141480138196	8.64103368962504	0.0865449144993187	0.735185459559292	0.932617455907478
Merged-chr10-57794095-2	chr10	57793595	57794595	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020561)	promoter-TSS (NM_020561)	-449.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	7.59480751834944	7.72655822803171	7.68080191376189	7.58336843767589	8.08790047793429	7.71046183365162	0.21886127011464	0.377560938522625	0.759978294360939
Merged-chr9-90113827-4	chr9	90113327	90114327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	993.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	8.55257900067673	8.66775974096022	8.55383523621398	8.43788803853981	8.62282603247403	8.48680849127071	-0.101302144419015	0.617569855633139	0.888810836054056
Merged-chr12-80066991-2	chr12	80066491	80067491	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	46022.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	2.66079646956457	2.48981221434654	2.38215135645374	2.72194299303166	2.56320445063291	2.84411750278762	1.0744828613399	0.190213141636741	1
Merged-chr1-171248879-6	chr1	171248372	171249372	+	903.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1257.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	3.99988799892506	3.5502281779125	4.10228616091277	3.75117526264045	3.74266102010346	4.03676367547672	-0.173047333871837	0.7589280763419	0.940311236380535
Merged-chr12-24789901-3	chr12	24789385	24790385	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41714.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	2.61443475842626	2.89473488819153	2.86896420662681	2.63275985380249	2.56720487518123	2.76198864483232	-0.787603569539984	0.300409767508054	0.697298854445564
Merged-chr18-60773533-2	chr18	60773033	60774033	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1063.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	3.1350682848492	3.14733813275343	3.57454962557418	3.36654964755185	3.08481845749715	3.33399459340265	-0.119660952198684	0.855762835721043	0.966258544020232
Merged-chr9-40652403-2	chr9	40651903	40652903	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-33561.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.11442266413696	3.83978931731729	3.92666930796886	3.36135464415181	3.3049875038946	3.52899114393633	-2.08194688003505	0.000420850549031577	0.0091646512650666
Merged-chr11-115665805-1	chr11	115665305	115666305	+	545.0	f1_balb.idr	intron (NM_001313936, intron 2 of 5)	PB1D9|SINE|Alu	33729.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.34517364642066	4.28137025149087	4.52274198048001	4.47368868423219	4.28764223476369	4.62728373668417	0.20663617003235	0.64478006830979	0.900291423062745
Merged-chr5-20934793-4	chr5	20934309	20935309	+	904.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-16180.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.66933505061562	4.99382414806032	4.85419236427103	5.25315562989182	4.78429360346122	4.80367177732232	0.263086749124673	0.527265266599352	0.849900007810753
Merged-chr13-58359160-4	chr13	58358655	58359655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4208.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	4.82164129655142	4.96273874133701	5.00027978442539	4.68354317808237	4.17809829378998	4.74531633262318	-0.889838485293259	0.0451424030518216	0.268090005933621
Merged-chr8-46394959-2	chr8	46394459	46395459	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-76078.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	3.42152842971579	3.33796690446786	3.37646866844733	3.699064897973	3.51936390105706	3.61259527076803	0.861591767664411	0.13568364867127	0.492409500987395
Merged-chr5-88554296-4	chr5	88553804	88554804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023054)	promoter-TSS (NM_023054)	-158.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	7.64491177174934	7.78596705016949	7.67858905539788	7.53022318164549	7.8130393577076	7.72631834655995	-0.0119316030926846	0.958066490730517	0.990000537228272
Merged-chr9-119343272-3	chr9	119342746	119343746	+	868.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357516, intron 3 of 10)	intron (NM_001357516, intron 3 of 10)	1952.0	NM_001357516	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	3.79481202276324	3.47922502010607	4.06606100878236	3.43451848683234	3.42835061451319	3.33160125474394	-1.39242288292903	0.0240222433241812	0.18225976315478
Merged-chr5-99254522-2	chr5	99254022	99255022	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1595.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.49218969328242	6.48828922702099	6.62100874322661	6.48329306292858	6.50165880147765	6.69559283924854	0.0428096146312672	0.870988592138708	0.970222087171093
Merged-chr13-44732727-4	chr13	44732238	44733238	+	919.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	1467.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	7.0645082479774	7.00615468010335	6.81463935712591	7.28888676621416	7.46026187576118	6.88896886449361	0.41362962983549	0.128679460498184	0.479799601167289
Merged-chr2-160318452-4	chr2	160317953	160318953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033411, intron 1 of 2)	intron (NM_001033411, intron 1 of 2)	9041.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	4.41190567565767	4.38519295137748	4.64909001466966	4.70003815413599	4.47516079774233	4.38106629597426	0.124762921463412	0.776308567072203	0.94480820353868
Merged-chr1-170867814-4	chr1	170867311	170868311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-40.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	7.85830787384679	7.90642825727787	7.2845977036579	7.60318363489105	7.91059645469633	7.41285255745958	-0.0793596061418138	0.779324372304308	0.945710994231145
Merged-chr1-152618545-2	chr1	152618045	152619045	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	B3|SINE|B2	6672.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.86584810985996	5.97534633456948	6.10792689833383	5.96753440364411	5.9045579933064	5.7955045227417	-0.148925114289944	0.618967464271613	0.889532544035517
Merged-chr3-35933611-4	chr3	35933083	35934083	+	859.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205361)	promoter-TSS (NM_001205361)	-617.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	5.4885827271372	5.75369425787548	5.55326868974206	5.35626231355115	5.47216151051599	5.17621359724732	-0.492860943563731	0.152754819652667	0.52113255570558
Merged-chr10-117072531-4	chr10	117072012	117073012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-8660.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	5.65255431634593	5.67326452857698	5.30201630094301	5.20354228633086	5.31448537050122	5.12407305128822	-0.663801493091883	0.0598414915747282	0.316648065561207
Merged-chr19-32077597-4	chr19	32077096	32078096	+	908.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	25544.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	3.6615017452961	3.90290150320165	3.90867217420285	3.83097312439766	3.52045562906263	3.50197796166162	-0.664616141834235	0.240141173700826	0.637129863570509
Merged-chr10-80796376-2	chr10	80795876	80796876	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_199322)	TTS (NM_199322)	2250.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	2.5766793806171	2.50307649386866	2.85494079288328	2.50480107419893	2.49142834156281	2.87021684946417	-0.109934589548038	0.891217593159088	0.974793404994892
Merged-chr14-40956677-4	chr14	40956185	40957185	+	988.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-8476.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.70266434397372	5.90538867997631	5.82758561035801	4.92118455350711	4.79257228366857	4.88813498398578	-1.91043209622859	5.96675884994736e-08	4.49305041073683e-06
Merged-chr4-126702680-4	chr4	126702183	126703183	+	913.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 3 of 5)	intron (NM_011970, intron 3 of 5)	25040.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	4.83931356901863	4.99203038847476	5.05635397131733	5.02822206025215	4.94022011399937	5.12031514731979	0.138562526419547	0.711315346922914	0.924661173262022
Merged-chr1-192981955-2	chr1	192981428	192982428	+	962.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301370, intron 3 of 8)	intron (NM_001301370, intron 3 of 8)	53847.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	2.4709625454806	2.47342320938568	2.43772198793744	2.7901801594759	2.5479439373136	2.83057321896179	1.52860518699991	0.0568344552919455	1
Merged-chr14-70055322-4	chr14	70054836	70055836	+	847.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-22109.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.47171179060612	3.8086938349411	4.24518480214545	4.71422248357579	4.47942710211644	4.26741154873562	0.763825763231132	0.14246178965172	0.503801228515429
Merged-chr6-108212335-3	chr6	108211804	108212804	+	884.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-792.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	4.55300459598179	4.58917122874023	4.6993990330795	4.57565145274188	4.85935880195796	4.56260710483522	0.176040817846572	0.674516342118008	0.911852710156386
Merged-chr2-153275803-2	chr2	153275303	153276303	+	919.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-15613.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	5.23991452545049	5.33372128759186	5.18309370551817	5.24207968212286	5.43183512961295	5.247541387093	0.118610666073131	0.733229707602219	0.932039456283818
Merged-chr7-127118011-4	chr7	127117490	127118490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	4039.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	6.64525536790561	6.60766433376203	6.30257974206821	6.7905161345735	6.83554260127429	6.53918771404271	0.313817042962248	0.255098177474518	0.652096686048004
Merged-chr9-32508327-1	chr9	32507827	32508827	+	834.0	f0_balb.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33125.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.76877022934089	6.71234461800655	6.8003129387443	6.82691768021636	6.82373567095343	6.68668587994355	0.0418125054934965	0.866669144700871	0.969114221403526
Merged-chr7-88244274-2	chr7	88243784	88244784	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33801.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.48564642392337	6.37274268301986	6.36629412824707	6.59481580493019	6.89044108016797	6.46474006541604	0.422138613396004	0.129871547477086	0.482060341820603
Merged-chr15-64278970-4	chr15	64278473	64279473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33700.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.87766011723004	6.02931846041496	5.50125203600363	5.77484420895427	6.06563715114452	6.08426483293976	0.257771330407777	0.438149128790778	0.800419903410376
Merged-chr12-69573848-2	chr12	69573348	69574348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9180.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	4.84248110619018	4.55272473784263	4.76838033778766	4.3528127379412	4.50113904295167	4.42939877753824	-0.712776316119997	0.0965753976743023	0.414282914351876
Merged-chr8-68994604-2	chr8	68994095	68995095	+	728.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	-94141.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.5150464195461	4.23382734258304	4.1429238869733	4.00192091296894	4.0201746341966	4.16435656130309	-0.711433175956163	0.141126957251662	0.501918783509842
Merged-chr2-166827692-2	chr2	166827192	166828192	+	696.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 3 of 38)	intron (NM_001085495, intron 3 of 38)	22111.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	5.57963140706034	5.67805801887088	5.60129524314503	5.36663027697353	5.4166772754884	4.7942803671256	-0.736836613963541	0.0544925490175242	0.299780366450488
Merged-chr14-52014921-4	chr14	52014444	52015444	+	957.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253695)	promoter-TSS (NM_001253695)	-386.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	6.52310016815037	6.51376870744745	6.45335257406939	6.64782248981256	6.47277059218694	6.4574609823354	0.0487346817011935	0.853033626027995	0.965597129346461
Merged-chr5-142459293-4	chr5	142458801	142459801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-4630.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	7.09957777529649	7.36996615790769	7.44852166421723	7.40711662639098	7.76377692116607	7.48526823293821	0.377434768433582	0.134653003049689	0.490482570572103
Merged-chr4-122902348-4	chr4	122901832	122902832	+	826.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12B|LTR|ERVK	-16256.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	4.21223637920682	3.60385567684674	3.91542263422994	3.82186212848347	3.6048690643971	3.98463418156236	-0.404837357130177	0.480234262096636	0.824537487093219
Merged-chr9-96554752-4	chr9	96554258	96555258	+	917.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053268, intron 17 of 23)	intron (NM_053268, intron 17 of 23)	-76083.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.79742577228172	3.87190635100401	3.72527655140155	3.50224606183959	3.88063587789437	3.63373251798382	-0.363368413171126	0.517060234891658	0.844470647767425
Merged-chr4-132009962-4	chr4	132009462	132010462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	39116.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.84416079822584	7.6679435873019	7.20731813312188	7.53741852999317	7.88566517881907	7.36277877816923	0.0195184437019959	0.945421296309593	0.987907378883357
Merged-chr10-9901226-4	chr10	9900738	9901738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081344)	promoter-TSS (NM_001081344)	-198.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	6.09806671205619	5.82053259259319	5.72861811961859	6.12875326268825	5.47199837787197	5.6524094726157	-0.20457721364408	0.566729662338825	0.86759593295474
Merged-chr5-144256730-4	chr5	144256206	144257206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	1481.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	7.72265963708487	7.70545255130359	7.86018044791631	7.84798794267719	7.94193009646916	7.86066904053017	0.180023783921885	0.401623028790145	0.777729269463342
Merged-chr14-61817888-1	chr14	61817388	61818388	+	622.0	f0_balb.idr	Intergenic	Intergenic	-135515.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.32584190788984	4.40220627446585	4.62572124728521	4.57890696618319	4.59377435115395	4.25937109777907	0.117410147035984	0.793855979466662	0.950531747588938
Merged-chr1-9953116-4	chr1	9952613	9953613	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8995.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	3.2286001454634	3.36944356206416	3.16609826847965	3.12701675651242	3.18113805336419	3.29581706007141	-0.256908442006664	0.683778737869523	0.915479407206029
Merged-chr5-88565821-4	chr5	88565308	88566308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289774, intron 1 of 17)	CpG	768.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	7.66404178669657	7.4612490265845	7.6048358741535	7.87724050557373	7.44829555015861	7.43026539007228	0.0381600215287371	0.879312393840053	0.972083703102674
Merged-chr3-108911749-4	chr3	108911246	108912246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356292)	promoter-TSS (NM_001356292)	-17.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	9.24131603183374	9.48868714520186	8.77640749141802	9.03393682574502	9.23225662295714	8.87237977651418	-0.204281215717129	0.425795985179139	0.793372423915306
Merged-chr4-49627188-4	chr4	49626688	49627688	+	902.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4872.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	2.60483551492458	2.36868596904827	2.68127957715916	2.39983344928289	2.44975103364011	2.5078013995379	-0.617211967601742	0.447189815780293	1
Merged-chr6-34619663-4	chr6	34619145	34620145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	21141.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.98922667414871	5.977672294434	6.2383429298135	6.13664733986757	6.15090376123682	6.33615289765055	0.239057027125193	0.410843253091259	0.783638488062019
Merged-chr13-113424001-4	chr13	113423461	113424461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78883.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.9492414006117	6.00941139633049	6.22506210997284	6.18758159661148	6.27844256623899	6.53609949518533	0.466405422107573	0.112915885012718	0.448889368641761
Merged-chr4-137861742-3	chr4	137861233	137862233	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-504.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	5.01471229708054	5.145363970279	5.35148574331704	4.51119848587896	4.35429003917551	4.41945612959148	-1.72393568507789	3.24723986035454e-05	0.00110149341337293
Merged-chr19-7017255-2	chr19	7016755	7017755	+	779.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 2 of 14)	L2|LINE|L2	2214.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	5.94594827384744	5.94394682068076	6.13027881897489	5.90163910937277	6.10887594904483	6.14895470173017	0.0932342572652354	0.752297165967924	0.938157651950668
Merged-chr12-32890620-4	chr12	32890083	32891083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63206.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	6.63756889325459	6.36536481562287	6.59725048549032	6.86098772553333	6.93223613626815	6.76936718525797	0.511607787118729	0.0502109447190648	0.285203924375995
Merged-chr13-60628523-2	chr13	60628023	60629023	+	714.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	26312.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.74384004768774	5.53164504879193	5.38821828364428	5.27067664949086	5.31405132708819	5.29231151164002	-0.538141625482828	0.114890031909889	0.452572495414372
Merged-chr4-45513564-3	chr4	45513068	45514068	+	908.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	17260.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.06238947248372	5.70989207303961	5.75538625124385	5.85473124898472	5.79014492470041	5.10400673270432	-0.390946841928489	0.305119873496428	0.701414919711867
Merged-chr6-114895620-1	chr6	114895120	114896120	+	549.0	f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	B3A|SINE|B2	26201.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.16099042979031	5.07985527962661	5.35196462773316	4.88171215138923	4.92205029091661	5.14086077991719	-0.456388056403853	0.22078942119598	0.615438215097489
Merged-chr4-117886283-3	chr4	117885800	117886800	+	638.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033617, exon 3 of 8)	exon (NM_033617, exon 3 of 8)	1029.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	4.29274469677642	4.16612112404261	4.49998670594604	4.40294656674217	4.54695190027698	4.78991854172284	0.67390107200402	0.136045795327004	0.492921904596115
Merged-chr7-43563494-4	chr7	43562970	43563970	+	933.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1100.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	5.9211403526968	6.18700978092712	6.10383725926991	6.41791472875652	6.43609930069617	6.18648589878592	0.475555078359323	0.0994413791359628	0.420513237468112
Merged-chr11-117769147-3	chr11	117768644	117769644	+	765.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_154387, exon 15 of 19)	non-coding (NR_154387, exon 15 of 19)	10504.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	3.07759643579705	2.99690498182713	3.16230328424991	3.57542701545129	2.91198792498838	3.17656231926611	0.721586781334227	0.304972885888467	0.701230797737315
Merged-chr12-69977678-4	chr12	69977188	69978188	+	963.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022028, intron 2 of 4)	MLT1F1|LTR|ERVL-MaLR	9314.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	4.27745472034241	4.43729715540432	4.15820773966336	4.58031607286768	4.24356682113319	4.36911874644427	0.258877953678377	0.576695900806276	0.871688505677889
Merged-chr19-34922303-4	chr19	34921802	34922802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-56.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	6.11036730369941	6.456206602483	6.31717865878338	6.38407984757802	6.46200912258084	6.19194067141443	0.0918321643101084	0.750407080461051	0.937550343416037
Merged-chr6-134016435-4	chr6	134015909	134016909	+	787.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19291.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.67130126235476	4.35275949412655	4.58626723324528	4.54276008240413	4.55111700030598	4.80384685278448	0.215093527299715	0.618010394493263	0.889093829402735
Merged-chr6-86539616-4	chr6	86539106	86540106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	12205.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	3.33974146113466	3.09427485156274	3.22748568648605	3.2148182602409	3.33151200052902	3.18220658087328	0.100780677577727	0.873749130383286	0.970440430875665
Merged-chr7-29815400-1	chr7	29814900	29815900	+	690.0	f1_c57bl6.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-672.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	4.53963713818788	4.95924992800421	4.72308855160616	4.5898860139974	4.34254900707008	4.54757940051144	-0.636364195721124	0.143722091875209	0.506028730682277
Merged-chr16-76399873-4	chr16	76399352	76400352	+	963.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26025.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.84654802873623	3.09566594676204	3.01813459372404	3.35835776326306	3.14937252320059	3.26848777282013	1.17706194738637	0.0804945512490838	0.375478544798365
Merged-chr4-94557244-1	chr4	94556744	94557744	+	641.0	f1_c57bl6.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	-448.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	6.64298349107763	6.52275093887388	6.25870596940077	6.37516798417354	6.63403399133658	6.06923974841566	-0.157343494619573	0.60913484578442	0.885053989692691
Merged-chr6-128424703-4	chr6	128424203	128425203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133927, intron 1 of 11)	CpG	207.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	8.8097123196863	9.22075001343953	8.74841233008943	8.84507273356376	9.00810359356979	8.55551940033821	-0.173846969591422	0.479835370577272	0.824391932626821
Merged-chr4-150556540-4	chr4	150556044	150557044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95630.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.52911221518748	7.47274804141502	7.25334772747424	7.35388055521094	7.49146479978508	7.09435571196874	-0.141739947032175	0.570600069037313	0.869253690275099
Merged-chr2-170154374-4	chr2	170153846	170154846	+	728.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.51685321383486	6.68084033591552	6.93518450558634	6.9435783488023	7.23964083049907	7.09716792670423	0.599826482792746	0.0245841187919972	0.185021287666833
Merged-chr9-119220405-3	chr9	119219918	119220918	+	729.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_033303)	TTS (NR_033303)	11274.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	2.91302314039817	3.09201437030063	3.33929655474146	2.7812641750615	2.75340334595085	2.97240333948997	-1.38532897284662	0.0569070590760246	0.307554675242418
Merged-chr2-167496555-4	chr2	167496056	167497056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030743, intron 1 of 7)	L3|LINE|CR1	-3682.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	7.9265749036458	8.03008664870038	7.59033491136054	7.82306833597566	8.13038920038552	7.62715396233728	0.0236673516274243	0.927341217848717	0.983584626679457
Merged-chr6-29246763-4	chr6	29246251	29247251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25737.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	6.76469439736309	6.85704350411865	6.13227667676556	6.40986945572712	5.84657535898312	5.94809891718345	-0.881771380300078	0.0111088940526421	0.108276551253053
Merged-chr19-32956478-3	chr19	32955957	32956957	+	738.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198880.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.64791065937506	5.61629555248817	5.67813103515717	5.50820971764832	5.74416286289005	5.76557645739517	0.0587601939569129	0.85323476337265	0.965627960080552
Merged-chr13-5874932-4	chr13	5874444	5875444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13455.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.7556345855347	5.0008917363729	4.56034066514252	4.67788760287684	4.65680294905591	4.39859185132356	-0.4750629371124	0.272350226460072	0.669663338532819
Merged-chr16-55816671-2	chr16	55816171	55817171	+	651.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 7 of 12)	intron (NM_001159395, intron 7 of 12)	5467.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.96388504690564	2.74718448077196	3.45382393875	2.84909554412477	2.98811799394476	2.99184423852489	-0.625002646151658	0.406697525266754	0.78101222717166
Merged-chr14-51942414-4	chr14	51941896	51942896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19623.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	6.61151206838584	6.92127959081202	6.62431865588404	5.98776474574409	6.10956061870806	6.13276873231569	-1.07106142645038	0.000137192487899218	0.00369729134013158
Merged-chr12-102436109-4	chr12	102435525	102436525	+	872.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	B1_Mur4|SINE|Alu	3788.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.81853571758627	8.08523225986162	7.79470424556688	7.92414832098845	8.30408301451659	7.77229067059137	0.169259233728604	0.504729873545965	0.837806481766929
Merged-chr2-160729961-4	chr2	160729458	160730458	+	906.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1352.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	2.61329546552064	2.6622193664916	2.47766907810065	2.60732426478684	2.63328036866065	2.8027038590768	0.501895393413395	0.51630650718574	1
Merged-chr5-65697324-3	chr5	65696833	65697833	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	523.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	7.34221636814168	7.60387107279738	7.32066523259062	7.58077316570946	7.17984723686382	7.34412064602317	-0.0832939761954785	0.742438813444233	0.935219340999573
Merged-chr17-83216687-2	chr17	83216187	83217187	+	766.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	1404.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	2.87685319499847	2.92913925635717	3.0506364925832	3.23569827187541	3.04515377542259	2.94037172433635	0.604840558115287	0.374705687580708	0.758118627242714
Merged-chr16-21380894-4	chr16	21380407	21381407	+	755.412476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42211.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.82269500035756	3.53522669295735	3.72651804359788	3.79390075558097	3.43681593793693	3.69295264784054	-0.185085791611028	0.745956217260092	0.936251303305737
Merged-chr7-88278016-4	chr7	88277497	88278497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-88.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.40911324970302	8.46924159388395	8.36836535524061	8.08568914990547	8.50638392372485	7.85189247745945	-0.320190797212353	0.205075403959667	0.595694220420628
Merged-chr2-164857537-5	chr2	164857059	164858059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011125, intron 1 of 15)	CpG-8831	149.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.97719040800541	6.90805650869722	6.92676927998461	7.03457154200973	7.08175279424835	6.79094191995241	0.0704918452220832	0.776673745660433	0.944890351789015
Merged-chr18-84311949-4	chr18	84311473	84312473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	223815.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	4.65097596986281	4.50219717567037	4.90100269678147	4.70576809653329	4.55693111824565	4.75091374522378	-0.0385763560927267	0.926899079240062	0.983578869536024
Merged-chr1-123929301-2	chr1	123928801	123929801	+	892.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199021, intron 1 of 25)	RMER13A2|LTR|ERVK	116258.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	2.76801430528225	2.73079068560259	2.85228939745254	2.93026312773098	3.0848875554221	3.15901958388656	1.37527953133468	0.0511133225932456	0.288165685096468
Merged-chr9-75408016-4	chr9	75407499	75408499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	1360.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	6.2865233578943	6.63900947903464	6.13477727859302	6.79799686947423	6.99095996329758	6.41249777707931	0.612091626173307	0.050564975427264	0.286338350602075
Merged-chr10-127628746-3	chr10	127628249	127629249	+	845.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7601.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.78815058866854	4.64225434504264	4.51261356896683	4.39360723768383	4.41702656232768	4.4496195060635	-0.593692298968985	0.163333201182286	0.537136550627445
Merged-chr9-40323491-2	chr9	40322991	40323991	+	976.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-2168.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	7.68340701936361	7.61526626295881	7.1978822943291	7.17842363013783	7.39297684421224	6.79094323364286	-0.541400986505775	0.058982125805009	0.314359769663284
Merged-chr10-94122751-4	chr10	94122251	94123251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25180.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	4.77583378216224	4.49796103090915	4.87103722867727	5.23265085365938	5.3028971993069	5.24348502261594	1.18587111314886	0.00201777780264276	0.0311734595918131
Merged-chr12-80807551-4	chr12	80807064	80808064	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	17032.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.31188539902348	5.26002936712333	5.54900374707636	5.74198401868949	5.59639485705581	5.93032917049433	0.72560299292594	0.0309591957434787	0.212967324687779
Merged-chr9-55153074-4	chr9	55152568	55153568	+	917.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346658, intron 1 of 12)	intron (NM_001346658, intron 1 of 12)	2985.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	5.11973375094088	4.9165614946462	4.82803335835723	4.54556377435769	4.72028907305624	4.9660243004517	-0.490895290300528	0.227935545438318	0.622981752321771
Merged-chr2-30416128-4	chr2	30415635	30416635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007760)	promoter-TSS (NM_007760)	85.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	7.87809315197225	7.77171935824196	7.86491208301358	7.68407093952295	7.88310866978557	7.7989988348261	-0.0638567595043696	0.769001242276753	0.942983923980385
Merged-chr4-130921408-6	chr4	130920905	130921905	+	976.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8071.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.72483283380944	6.6850748397339	6.51847759966235	6.68125172183721	6.74415708557713	6.40759958665139	-0.0349452836561807	0.896807051268318	0.97587199430405
Merged-chr2-157052121-2	chr2	157051621	157052621	+	837.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 3 of 14)	ID4_|SINE|ID	27144.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	3.01203057385061	2.90332150957416	2.83931868455116	2.87299126050112	2.76488660467579	3.03263747173205	-0.166976386855594	0.812848638404744	0.95583032326256
Merged-chr16-49857262-2	chr16	49856762	49857762	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1608.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	7.99860183607569	8.17379748464107	7.71917804311679	8.29988034533156	8.71159217740051	7.71820850729424	0.470257550155973	0.123889678329232	0.471078570324852
Merged-chr17-78247219-4	chr17	78246708	78247708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	46960.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.70444051083952	5.57334346428325	5.58440670138792	5.55342666377354	5.77151638986114	5.61901911054507	0.0623803563151539	0.845280408628134	0.963765935544047
Merged-chr6-87537542-2	chr6	87537042	87538042	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-4283.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.23600652261837	4.30428364548096	4.56883340533544	3.93635719122106	3.81296962928221	4.36333126106592	-0.904652623350911	0.0781613682895178	0.369198952813814
Merged-chr17-73941387-2	chr17	73940887	73941887	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8809.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.40963785012263	7.60895251755612	6.87146375239625	7.00915265107306	7.32421611975092	6.47978704432692	-0.514577909493925	0.127536513993602	0.477354066680746
Merged-chr6-119481096-3	chr6	119480598	119481598	+	860.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1430.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	5.22980034198123	5.33225466267025	5.25523810855795	5.23490176381941	5.70465971492009	5.35147574309576	0.362075101489868	0.314772862902603	0.709088999550579
Merged-chr2-27024789-2	chr2	27024289	27025289	+	745.700012	f1_balb.idr|f1_c57bl6.idr	exon (NM_172659, exon 5 of 10)	exon (NM_172659, exon 5 of 10)	3209.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	2.63802182499496	2.53207971487106	2.76152577440134	2.88708433254337	2.52078778840338	2.64725162499647	0.268873790421827	0.729471812665198	1
Merged-chr11-106674820-4	chr11	106674313	106675313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	40468.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	8.41382516438313	8.22644650748257	8.10828773724538	8.06131307748804	8.30285081836348	8.0788981947054	-0.1444037442716	0.518578721498394	0.845379402570143
Merged-chr17-46674317-4	chr17	46673814	46674814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144857)	promoter-TSS (NM_144857)	-59.0	NM_144857	224823.0	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	6.65681722830984	6.40854101872839	6.93486456618604	6.51429592891265	6.70237815409356	6.92695501887754	0.0711361552335534	0.807583141833249	0.954557080558103
Merged-chr12-55449505-2	chr12	55449005	55450005	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43142.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.27970744769774	2.93944932430492	3.16111486481978	3.23078479208902	3.16825852118612	3.11494591886379	0.166714282257356	0.800666841378048	0.952653061321331
Merged-chr3-135686708-4	chr3	135686207	135687207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4840.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.46476808649396	5.67630828325611	5.90587306873267	5.56106037187415	5.92010825599015	6.13521301412663	0.364181537132892	0.293821834697689	0.690424156263798
Merged-chr1-195023630-2	chr1	195023130	195024130	+	553.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015566, exon 5 of 8)	non-coding (NR_015566, exon 5 of 8)	6231.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	3.57796161230277	3.55836082275487	3.94139087290036	3.33773565629828	3.06896608969485	3.63663885299148	-1.24636575517929	0.0566244627106731	0.306839649775199
Merged-chr2-120158314-4	chr2	120157802	120158802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-3727.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.59104057426852	6.40129074580529	6.2007875238759	6.13740820919796	6.58806706426585	6.36386560617078	-0.051394661970263	0.864247628130782	0.968269312109804
Merged-chr2-126475946-4	chr2	126475458	126476458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15595.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	7.56275158425252	7.65199486814539	7.38733313688425	6.83278785094254	7.07868146715683	6.97898751196704	-0.854073254749233	0.000447546268669637	0.00962507881195739
Merged-chr7-143037523-4	chr7	143037021	143038021	+	976.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015529, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-15229.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	6.52894842388991	6.53843911119349	6.6856914740726	6.67745042187139	6.7982928905341	6.79035241898064	0.278584957049898	0.274402418474264	0.671721462492876
Merged-chr3-108069795-2	chr3	108069295	108070295	+	730.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORSL-2b|DNA|hAT-Tip100	15607.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	3.02979202020781	3.03584605667955	3.01546715981694	2.98271659938702	3.04429777499873	3.14550899163322	0.130971751188206	0.842130634517128	0.963002495523594
Merged-chr2-167293012-4	chr2	167292507	167293507	+	943.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-52470.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.8502836808946	4.66469897270227	3.98031602453153	4.11263889081418	3.81219602108963	4.0543433317456	-1.51770259778581	0.00516067373148786	0.0625188542318933
Merged-chr2-43806585-3	chr2	43806075	43807075	+	875.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57751.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	5.20942215356141	5.47418155128684	5.52088956274809	5.60167390794872	5.58931067046997	5.66438384327347	0.405894284019577	0.222720783396854	0.617656010694754
Merged-chr12-3301595-4	chr12	3301091	3302091	+	818.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	8378.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	4.08893629070964	4.34971816463991	4.17401922285933	4.37759367334238	4.02744962946365	4.33267808496801	0.0983919136895939	0.838381115319542	0.962518552953479
Merged-chr4-126257290-4	chr4	126256753	126257753	+	765.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-934.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	6.22349281970566	5.97980079352696	6.36199183760717	6.56390737904927	6.7136468055964	6.99782331867651	0.931086032221911	0.00143073510452917	0.0238574361879084
Merged-chr3-105892617-4	chr3	105892094	105893094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-11827.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	7.88301993648325	7.81306295351755	7.90891737441403	8.00050644643648	8.09968639439356	7.72154083421513	0.129416959445379	0.568747117191229	0.868718319030953
Merged-chr1-86067462-2	chr1	86066962	86067962	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027357, intron 1 of 24)	intron (NM_027357, intron 1 of 24)	2843.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	3.13974949657409	2.9472967544303	3.06891457963701	3.17936231487679	2.91873535309091	2.95970471123306	-0.136860940177997	0.840365333308961	0.962819298477451
Merged-chr2-153118400-4	chr2	153117916	153118916	+	751.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	9948.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.5903417981411	6.36872809905049	6.56747846851639	6.54388833309946	6.75928690213873	6.8856040910313	0.356103822708429	0.188167220353376	0.57358017625247
Merged-chr10-67181051-4	chr10	67180537	67181537	+	915.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-4713.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.78789669902007	5.95764728265486	5.79819341950167	5.79253915876058	5.92215448857752	5.8598598820753	0.0135166724728714	0.964325783142919	0.991457164297438
Merged-chr7-63903863-4	chr7	63903365	63904365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-12992.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.77640793004199	6.79222059708011	6.7710609317751	6.91072461643624	6.93986592656465	6.6686740903986	0.114299590485632	0.651036941747797	0.902735752871093
Merged-chr14-63120765-2	chr14	63120265	63121265	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1697.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.69983311894045	4.70556332556321	4.83076162729253	4.57195925526263	4.76713295000969	4.82265720924063	-0.0427344043627343	0.915379846331477	0.980959026698783
Merged-chr4-128973948-4	chr4	128973496	128974496	+	721.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-11541.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	3.97168230507249	4.06740312230175	4.3354065482273	4.2485216201432	4.31738377728747	4.27301252010706	0.438276942231088	0.354791762731855	0.741862808502317
Merged-chr8-111643463-4	chr8	111642962	111643962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	19.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	8.140615686848	8.57161709089936	8.12871278828273	8.22983547224463	8.36430057899902	8.02454509093861	-0.117565996050262	0.631835463356104	0.895284049434373
Merged-chr9-15395527-4	chr9	15395016	15396016	+	926.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-37728.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	3.31550373342192	2.93472089425756	3.43464552837519	2.92105860169147	3.02576696018618	3.29642264281614	-0.658319699223528	0.350157122960681	0.738196404451908
Merged-chr19-5711415-2	chr19	5710910	5711910	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	6939.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	4.28153093921787	4.15490919575241	4.47790164373811	4.1460093733702	4.32983591581278	4.7284268537554	0.287653135673464	0.551566292179753	0.861290958858884
Merged-chr11-9531052-4	chr11	9530555	9531555	+	886.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339113.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.02358222299807	4.76165271328173	4.98868977436817	5.28043587568311	5.40245323859278	5.69707567130848	1.09973111289458	0.00329858887675564	0.0451800795484911
Merged-chr9-90275561-10	chr9	90275065	90276065	+	958.4833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-4796.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.52167087398763	7.25918000281621	7.75764139753365	7.99920810128061	7.8883191667888	8.10309868318073	0.684381198882015	0.00521028169363833	0.0629043991822777
Merged-chr1-173934636-4	chr1	173934129	173935129	+	918.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302649, intron 5 of 9)	intron (NM_001302649, intron 5 of 9)	7863.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.1187780155516	4.99525384038779	4.94410464098015	4.38538864930698	4.6527919178411	4.3918041958882	-1.2229025640877	0.0036929437316601	0.0490240047900404
Merged-chr9-107612866-4	chr9	107612355	107613355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3614.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	8.67439323352838	8.57007857005238	8.29354360873031	8.37361000283056	8.33508584902713	8.30529371512596	-0.263334078277527	0.224833232125346	0.619740315016701
Merged-chr10-57721795-2	chr10	57721295	57722295	+	953.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_008863, intron 4 of 5)	B1_Mm|SINE|Alu	-63128.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.57768944776801	6.64049266522318	6.47857291041799	6.69457156984429	6.92525751537964	6.66098742674547	0.318360864446985	0.225803912165909	0.620701256044383
Merged-chr19-34291143-2	chr19	34290643	34291643	+	805.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007987, intron 1 of 8)	intron (NM_007987, intron 1 of 8)	484.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	4.25462572553743	3.85348525821414	3.92833612672769	4.5420135043709	4.17173687026791	4.24877247592371	0.831731713511531	0.102282418914573	0.426474018492874
Merged-chr9-65844659-4	chr9	65844149	65845149	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357872, intron 12 of 13)	intron (NM_001357872, intron 12 of 13)	-17085.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	4.31720110635288	4.23090012034964	4.35829590409598	4.14353338667484	4.07297032907457	4.29630052857142	-0.368815272260066	0.424470285701237	0.792697196836987
Merged-chr17-5221871-2	chr17	5221371	5222371	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	196896.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	2.8465691155042	2.9560134960467	2.93575581148405	2.60155249943304	2.79350963586928	2.70130706940495	-1.08221032186212	0.147044189998068	0.511715514631757
Merged-chr2-160225643-4	chr2	160225144	160226144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	101850.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.38653474553548	5.24760656471325	5.35352915808598	5.51794279512716	4.98264334701918	5.32479097240379	-0.083887864397622	0.821279842872519	0.957943285366418
Merged-chr8-125503124-2	chr8	125502624	125503624	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-10291.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	2.87385349853955	2.94873382211939	2.95059625858179	2.8753213789298	3.05107079422777	3.08072910310979	0.383588577270107	0.57306899740454	0.869947175774374
Merged-chr2-6726320-4	chr2	6725816	6726816	+	738.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-4654.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.85006120697896	3.71068369859301	3.50379664916001	3.59439295254394	3.33369925185634	3.51915229982482	-0.781087935849369	0.182097690473303	0.564698294160054
Merged-chr5-125333216-4	chr5	125332714	125333714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7880.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.10394943506745	5.16116297340252	5.61380141208717	5.15691266795738	5.21893599265183	5.46650959632659	-0.0385509632874002	0.918764479087253	0.981830247255695
Merged-chr10-95299837-2	chr10	95299337	95300337	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	23872.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.81980349467533	6.62689650583887	6.55535145351852	6.63889261509685	6.84607120133838	6.56139081529913	0.0303976711551208	0.90972285062487	0.979601081144038
Merged-chr3-144607242-3	chr3	144606732	144607732	+	893.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	36805.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.16175556112712	2.79194291310629	3.00448868867671	2.82020458758492	2.88233826101467	3.07663322421666	-0.321420523977566	0.652315547828877	0.902943650908013
Merged-chr6-88384838-3	chr6	88384343	88385343	+	667.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	61696.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	4.54840949473484	4.45331026638173	4.36961072090372	3.97522571015379	4.33949145612855	4.20926875909131	-0.72016062650641	0.126358639938045	0.475287495850542
Merged-chr7-19803128-3	chr7	19802641	19803641	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6332.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	3.63290212758463	3.40914627043116	3.57180798033097	3.95829981423645	3.50872896019784	3.53150545923105	0.49710856316994	0.399788973659302	0.776182764483718
Merged-chr6-52699221-4	chr6	52698709	52699709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14520.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	4.34809339289918	4.15712845738069	4.16388442690405	4.07470464122701	4.76799283874261	4.62196824926522	0.764617766566355	0.124635061597663	0.472306664538883
Merged-chr3-32421264-3	chr3	32420758	32421758	+	841.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14893.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	3.50637231845077	3.54361962718663	3.52084191146333	3.52028980580593	3.52708871677578	3.59129698445417	0.0742190624080255	0.894700946486948	0.975576532925631
Merged-chr17-88064714-4	chr17	88064223	88065223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348248, exon 1 of 23)	5' UTR (NM_001348248, exon 1 of 23)	209.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	8.03974128921866	8.2999774258223	8.1210526965239	8.16669209225498	8.21614307226555	8.19697596980454	0.0470828550420619	0.82467772475773	0.958596193929081
Merged-chr9-107998051-4	chr9	107997555	107998555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4593.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	5.08234962056045	4.87679515868282	5.07135733053759	4.83170957737582	4.57075764398319	4.69664752487621	-0.699512880839744	0.0775765748779683	0.367575402451226
Merged-chr15-59049480-2	chr15	59048980	59049980	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	32546.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	5.52270473368738	5.26106860029875	5.58853311561971	5.20770656445105	5.35810899112708	5.36940300826861	-0.284043160178484	0.413806302703619	0.785367083470648
Merged-chr15-96700261-4	chr15	96699737	96700737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-509.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	6.4776758306692	6.33445990516782	5.88621416675984	6.28096205144709	6.05413011569946	5.86921638980049	-0.309834849854315	0.340438357788269	0.730157616116257
Merged-chr19-5777539-4	chr19	5777026	5778026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-6107.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	4.69754522279016	4.38078536841597	4.30682111015194	4.64330432103711	4.63234888832688	4.27923589447918	0.141936029888913	0.758123306220034	0.940090072784069
Merged-chr6-72154169-4	chr6	72153645	72154645	+	955.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011375, exon 7 of 7)	3' UTR (NM_011375, exon 7 of 7)	-30948.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.44981006124256	5.70238393460384	5.554928782143	5.6895187651712	5.53336434082359	5.20320785388687	-0.13998248558327	0.688387752097193	0.917216444209858
Merged-chr13-9750005-4	chr13	9749495	9750495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	13815.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.61471748936145	3.55320366694166	3.69228202188838	3.74148062591248	3.83453062811653	3.7100477963886	0.510388326176354	0.343316636907968	0.732198933268765
Merged-chr8-105553048-4	chr8	105552552	105553552	+	885.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	13012.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	3.86387836715817	3.83709317394494	3.92469147405058	3.67665547051782	3.74764561902725	4.17159187448532	-0.000585268841446632	0.999133957854436	0.999864283693757
Merged-chr12-79172163-4	chr12	79171687	79172687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	CpG	271.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	8.69247442230721	8.76294296406818	8.56585637680638	8.42976314876267	8.53765561345065	8.1649501413074	-0.39552903462132	0.0714213319702023	0.350618370922116
Merged-chr4-62505750-2	chr4	62505250	62506250	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008525)	TTS (NM_008525)	-3550.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	2.93750665030795	2.94456093682919	3.08997468940411	2.79154426516039	2.71692978981334	3.04899287960471	-0.668864575863314	0.348525680421175	0.736398893285726
Merged-chr7-43642807-4	chr7	43642307	43643307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028236, intron 4 of 5)	RLTR28|LTR|ERVL	8068.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	7.38082846853898	6.9980544942462	7.1712757881556	7.47130573660588	7.62803596042877	7.38024566176904	0.456000296696501	0.0672674871319897	0.339137666469697
Merged-chr1-172455505-4	chr1	172455022	172456022	+	882.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19838.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	6.64678740825474	6.44851704512888	6.44040461348644	6.6646490993928	6.97021237297834	6.8023907029276	0.480171983928005	0.0725219240477516	0.353758017127759
Merged-chr14-75847526-2	chr14	75847026	75848026	+	641.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028481)	promoter-TSS (NR_028481)	-397.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	3.65980607915348	3.70728924670338	3.60143064664512	3.51701874312981	3.49026430567657	3.87138020231117	-0.107590001305076	0.849689097284683	0.964686793473289
Merged-chr9-66089212-2	chr9	66088712	66089712	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 13 of 14)	intron (NM_019727, intron 13 of 14)	-19481.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	3.14935582427205	3.21940522130869	3.59232754464143	3.30327779390066	3.0423424729712	3.46185960060789	-0.212324503119162	0.748938251469698	0.93711275444937
Merged-chr2-170343884-7	chr2	170343415	170344415	+	961.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12446.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	7.48367462815628	7.82020615980374	7.22790651003925	7.91868684152762	8.01686615983625	7.39468740282591	0.390148129201027	0.176951045184657	0.557594294017865
Merged-chr18-20648613-4	chr18	20648112	20649112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155534, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	-16638.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	7.26952165125797	7.15093908553773	7.25933644350919	7.24761938355694	7.51390188595263	7.06685475833257	0.110734681859404	0.660179935837401	0.905906890165946
Merged-chr4-115840662-1	chr4	115840162	115841162	+	550.0	f1_balb.idr	intron (NM_001355174, intron 1 of 11)	intron (NM_001355174, intron 1 of 11)	1464.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	4.02613446233814	3.51405700681593	3.7038424530633	3.63178851710774	3.39050644799441	3.55827957374764	-0.831717254180251	0.160414599216859	0.533005464258189
Merged-chr3-52088579-4	chr3	52088074	52089074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16432.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	7.01882374676022	6.86588718900436	6.82772888698805	6.94075353865479	7.04825438549326	6.80974391797959	0.0515869889771036	0.836873311079915	0.962001762335242
Merged-chr11-26587285-2	chr11	26586785	26587785	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6635.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.60417943739073	6.59933535820608	6.60678589937494	6.894745243913	6.90116185341012	6.69919670727903	0.373730856935386	0.139171834802719	0.498416546021549
Merged-chr15-8636208-4	chr15	8635732	8636732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148938, exon 10 of 10)	exon (NM_148938, exon 10 of 10)	74575.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	7.24005528052557	7.37386393761308	7.16136694506515	7.66594596513477	8.10983579026166	7.39963558723561	0.737435802797489	0.00744757802844605	0.0817220193315231
Merged-chr3-144522847-2	chr3	144522347	144523347	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	47369.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	3.10499880693151	3.16283287452098	3.15522621743982	3.0604081811634	3.14071643985599	3.22650780989215	0.00451455819459897	0.994353118294704	0.998918571480046
Merged-chr3-97995394-2	chr3	97994894	97995894	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-18144.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.16707255718856	4.9566496632096	5.31841531467347	4.87691354149903	5.37063975471517	5.09503170856752	-0.0153006551835334	0.968928532343521	0.992882522302438
Merged-chr13-98812439-4	chr13	98811949	98812949	+	941.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	3000.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.48676923741714	5.2321673991164	5.54329292778503	5.96181388288096	5.77912657812615	6.0020783608615	0.907383130821264	0.00543570659941492	0.0649661411554318
Merged-chr3-97901180-4	chr3	97900692	97901692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011342)	promoter-TSS (NM_011342)	-35.0	NM_011342	20333.0	Mm.2551	NM_011342	ENSMUSG00000027879	Sec22b	4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1	SEC22 homolog B, vesicle trafficking protein	protein-coding	6.76253311200538	6.86748265409201	6.42390932338257	6.83431135790432	6.83116994672748	6.57806928044679	0.0785803090664605	0.776588146364781	0.944890351789015
Merged-chr16-31192021-4	chr16	31191515	31192515	+	974.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	9223.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	6.13516876531093	6.26887473502472	5.9962144917496	5.97150431711676	6.16340752798768	6.18984312730162	-0.0595252615579903	0.838513662946973	0.962518552953479
Merged-chr5-99257895-2	chr5	99257366	99258366	+	707.700012	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4939.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.85252019943948	2.96808152470334	3.35598279541095	3.15276237527587	2.62883570050022	2.98488687852417	-0.594848009431975	0.443298274221506	0.803766572656034
Merged-chr17-67348750-4	chr17	67348235	67349235	+	867.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MER5A|DNA|hAT-Charlie	5724.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.92412219444808	7.00840366527641	7.00361191031138	6.88319767294338	6.89361044389824	7.16156810317123	-0.000337254423818581	0.998917083281324	0.999826323540084
Merged-chr7-116457177-4	chr7	116456687	116457687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-13729.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.98225796545205	7.0372655213157	6.81518398511996	6.32840149653245	6.51861257330167	6.26870980287353	-0.895314814624022	0.000777841218586629	0.0148685072630729
Merged-chr7-127745462-4	chr7	127744943	127745943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1332.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	5.24869500250303	5.03965618111048	5.52325988954704	4.89030647545505	5.41792401006366	5.13969237444819	-0.199919974548211	0.616095482653527	0.888272754285876
Merged-chr12-84175116-2	chr12	84174616	84175616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18899.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.27471131394959	8.45770694708001	8.10313815162355	8.23604004133286	8.57053782866833	8.26673487251817	0.112121467449817	0.629624244013484	0.894364606069187
Merged-chr6-114854309-3	chr6	114853793	114854793	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	67528.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.04996321806968	2.83979495205013	3.28524893858187	2.92150768820009	2.82037399653008	3.25051649844499	-0.274895850293032	0.70361372178622	0.922119521859599
Merged-chr2-170160341-4	chr2	170159840	170160840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17665.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.91434831867211	4.93894334200283	4.84335563994456	5.09831335353968	5.0721265655488	5.15741411876976	0.436163433299998	0.235783163801999	0.632125090802053
Merged-chr5-121124460-4	chr5	121123976	121124976	+	890.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	66921.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	2.70500721882302	2.59756813103849	2.82577604912708	3.1436628859065	3.04143450194366	3.02281918442451	1.89407523475031	0.010379399860486	0.103102374440819
Merged-chr10-11282483-2	chr10	11281983	11282983	+	715.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168297, intron 1 of 2)	intron (NM_001168297, intron 1 of 2)	896.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	4.70971243031815	4.70367686342263	4.40122377820247	4.58609245283794	4.6097956613392	4.37634036563383	-0.208952456766639	0.630190353088742	0.894642529318186
Merged-chr3-95357221-4	chr3	95356694	95357694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018877)	promoter-TSS (NM_018877)	8.0	NM_001163641	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	4.55537863598262	4.36532468908883	4.54082985422934	4.80932294420786	4.79430951844008	4.80556564052117	0.754939601995531	0.0649165149703228	0.33220008472636
Merged-chr2-167491760-2	chr2	167491260	167492260	+	738.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-885.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	5.18906455673615	5.13634515135812	5.3004859447613	5.34373829904625	5.39691063446957	4.86357333240656	0.0647622227650281	0.864821515720676	0.968415743874547
Merged-chr9-32509907-3	chr9	32509391	32510391	+	992.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	31561.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.12041373540382	6.04268640772743	6.09151757125504	5.75396688036595	6.16173834193809	6.33079713200247	0.0264623850507678	0.932652745343966	0.985256441991909
Merged-chr11-4097451-2	chr11	4096951	4097951	+	686.333313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144520, exon 12 of 12)	3' UTR (NM_144520, exon 12 of 12)	-2020.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	4.58650932899296	4.52922934995714	4.72499049949091	4.55791998568823	4.50997893039643	4.46843789231268	-0.233964842459746	0.576185941593128	0.871585067865562
Merged-chr19-6128166-4	chr19	6127625	6128625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026912)	promoter-TSS (NM_026912)	90.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	7.58272986981617	7.70183166439384	7.48470987321474	7.74371938633361	7.93320043912507	7.31765665622338	0.151818259071497	0.559990006918664	0.865168019835518
Merged-chr12-84030745-1	chr12	84030245	84031245	+	574.0	f0_balb.idr	Intergenic	Intergenic	-7634.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	3.8659318894162	3.78917578987702	3.51339656141793	3.65659208605029	3.62034845861806	3.58597106273431	-0.397365367642938	0.478264613850321	0.823683445569762
Merged-chr11-98784826-2	chr11	98784326	98785326	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9449.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	6.43351700098387	6.16251267196024	6.55788463266133	6.42347429329036	6.73492718872195	6.758050364828	0.41875718032441	0.144618515260753	0.507465428552567
Merged-chr15-85634635-4	chr15	85634133	85635133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-52812.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	7.32482081990911	7.46666656945258	7.35729106333508	7.58268522639543	7.74163557795741	7.34689260634716	0.278842542847647	0.245592834306392	0.642645689440908
Merged-chr7-120206179-4	chr7	120205661	120206661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026458, intron 1 of 30)	intron (NM_026458, intron 1 of 30)	2197.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	6.57700366088512	6.87593573699634	6.65884134447378	6.43118560821894	6.45202259371784	6.38055736966652	-0.463293983795154	0.083580129655719	0.382643643701502
Merged-chr1-84839692-6	chr1	84839238	84840238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	-103.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	6.55745936175635	6.73037297585106	6.52638520063479	6.80008268291262	6.64404060213836	6.62058153165325	0.124599943691503	0.633105673320015	0.895909130367548
Merged-chr16-91352889-2	chr16	91352389	91353389	+	766.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	4.90687204659878	4.8164394654603	4.78752823881934	4.5297465733285	4.31081128960146	4.61918255488566	-0.860909011185844	0.0388103125552167	0.244294461539789
Merged-chr14-40967104-4	chr14	40966566	40967566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145928)	promoter-TSS (NM_145928)	-170.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	6.29129716289907	6.25036541419105	6.37469025605576	6.25522543098564	6.01460362310044	6.24173812540673	-0.226366345616337	0.422358084597436	0.791187261128029
Merged-chr11-107511408-2	chr11	107510908	107511908	+	837.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31880.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	3.37250800556618	3.38785724722134	3.53293370037149	3.07131840432106	3.21587336100503	3.50035346550971	-0.638761858556637	0.313486434722801	0.708069688656445
Merged-chr2-18056114-2	chr2	18055614	18056614	+	852.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_149308, intron 1 of 9)	intron (NR_149308, intron 1 of 9)	386.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	5.74058058078727	5.40180656268632	5.74535807899173	5.83698243958324	5.65525899368152	5.47327180661613	0.0658915663874856	0.845593980759797	0.963834884892227
Merged-chr17-24163780-4	chr17	24163279	24164279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172935)	promoter-TSS (NM_172935)	-46.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	7.28416788466163	7.49997040568754	7.13399143516897	7.04547702572146	7.16414756723195	7.06129223565133	-0.34130176522621	0.166236804557475	0.541400134393454
Merged-chr17-73095256-4	chr17	73094757	73095757	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12728.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	5.27793448617623	5.11317783561625	5.22866727558371	4.87786381956582	5.14954571848657	5.46674637080238	-0.0600020953068174	0.875284671496548	0.970953455305683
Merged-chr10-94093599-3	chr10	94093097	94094097	+	958.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-54334.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	4.29470134201968	4.35694611613639	4.32008677225131	5.75776685185574	6.01098575470429	5.67797990891663	3.30135516141885	1.56011341982533e-15	4.72050608861187e-13
Merged-chr7-81828578-2	chr7	81828078	81829078	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_146193, intron 1 of 7)	intron (NM_146193, intron 1 of 7)	853.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	7.35296913378701	7.51815892386777	7.31646853811623	7.36331755524464	7.46081061230778	7.48055131264372	0.047493948166708	0.835925538204806	0.961873866737315
Merged-chr12-55487498-10	chr12	55487032	55488032	+	995.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5115.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	7.19877940303213	7.03520049578211	6.94234176452542	6.90187249861213	7.00965868069458	7.10682465045576	-0.0949702260399404	0.700471957006861	0.920919335036368
Merged-chr9-7871285-4	chr9	7870767	7871767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1903.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	8.14549379975131	8.29346651156027	8.05236682370926	8.4572395376571	8.70405234574605	8.2536174636459	0.447664218459072	0.0530395969864264	0.295126306409427
Merged-chr6-37426029-4	chr6	37425542	37426542	+	987.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	MT2B2|LTR|ERVL	16106.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.1606879680353	6.06869179144755	5.99779052352731	6.34402392634287	6.62874903104936	6.46806190909935	0.683921272691032	0.015386404046403	0.135053896302281
Merged-chr18-57354812-4	chr18	57354360	57355360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028447, exon 1 of 9)	5' UTR (NM_028447, exon 1 of 9)	127.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	7.68082828703528	7.52630063639694	7.16973156423174	7.43967143486906	6.97318890795842	7.21496395738008	-0.388730330150283	0.155677988282383	0.525567170406155
Merged-chr5-38038313-3	chr5	38037740	38038740	+	932.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	-990.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	4.14036871128161	4.21763909573649	3.91001726028319	3.98076056079952	3.80393736754706	3.8757361178529	-0.652147546370003	0.198509234782561	0.586811013492516
Merged-chr4-43558832-4	chr4	43558355	43559355	+	903.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	3728.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	5.22915532397056	5.27611453393396	5.52257837346015	5.31272437722854	5.26907948499424	4.93630183963181	-0.29382976773789	0.42554748366397	0.793175821439711
Merged-chr7-73559325-4	chr7	73558815	73559815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-920.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	8.38587734891947	8.81538166299232	8.27208812836349	8.34228161177686	8.87928979418323	8.1794603078868	-0.00889677886939029	0.974998401842073	0.994418776221458
Merged-chr7-132317396-4	chr7	132316892	132317892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360768)	promoter-TSS (NM_001360768)	-164.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	7.51510281247096	7.42808137235288	7.19830719953422	7.22781733963842	7.55847508685653	7.14139198200154	-0.0900703481887179	0.726775620000466	0.930031038634762
Merged-chr2-167654668-2	chr2	167654168	167655168	+	732.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145538, exon 2 of 6)	exon (NM_145538, exon 2 of 6)	6876.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	3.32620378325443	3.46990103400217	3.18107673195427	3.09595629715948	3.09797703028874	3.31132855406013	-0.706229724061887	0.271348826050359	0.668672425457511
Merged-chr1-180429088-3	chr1	180428596	180429596	+	931.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54408.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	3.5437379887492	3.38228363404911	3.47599855477111	3.3883818403283	3.39781683064713	3.26200280978636	-0.436172907923227	0.464846527232445	0.816597344887838
Merged-chr1-174036256-4	chr1	174035732	174036732	+	876.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4477.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	3.67166275888246	3.81084046181256	3.87111380405605	4.1688295697024	3.72332128198678	3.94084331850739	0.531511241486416	0.322212227978325	0.715637280205544
Merged-chr6-113659851-4	chr6	113659331	113660331	+	963.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	21364.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.60634707785698	7.29392808237606	7.41455765362094	7.50086431027497	7.56633620435268	7.31650251012328	0.0373564731773421	0.876631164538195	0.971344419120637
Merged-chr18-53743865-4	chr18	53743375	53744375	+	927.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178686, intron 2 of 20)	intron (NM_178686, intron 2 of 20)	672.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	6.26741182726446	6.00723110185803	5.93360469837399	6.0805978955391	6.22779838346405	5.70080300335341	-0.0801641996095319	0.804385871250564	0.953645244705356
Merged-chr12-4155359-2	chr12	4154859	4155859	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	MER45B|DNA|hAT-Tip100	21206.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.05044358632413	4.24820419734607	4.06727083299729	3.71856292506178	3.37170337633157	3.79107597874195	-1.62928570323557	0.00375637673029116	0.049628547947613
Merged-chr9-119894839-4	chr9	119894366	119895366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026236)	promoter-TSS (NM_026236)	-29.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	7.03313007193069	6.49581829980291	6.89118937337047	7.37236895035936	6.32987883297682	6.80319899604741	0.129349551451019	0.717075256964065	0.926979087819795
Merged-chr17-65610171-2	chr17	65609671	65610671	+	707.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	B3|SINE|B2	3384.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	3.79853531400302	3.9440741744308	3.89569320920216	4.20880211987305	4.21433582232949	3.74822970407267	0.606510283607272	0.249815474368808	0.646894033899099
Merged-chr8-3664623-4	chr8	3664123	3665123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	4.16975183749817	4.02092753643032	4.53371174438511	4.51786814253717	4.32685174359623	4.35334617534363	0.410161556531093	0.390168507529135	0.769518914518539
Merged-chr19-40401344-4	chr19	40400745	40401745	+	976.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034962, intron 2 of 22)	intron (NM_001034962, intron 2 of 22)	1065.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	2.74899335151892	2.73258292606416	2.74827421995968	2.67879486581898	2.53539802361426	2.88092746167434	-0.235886212988899	0.753855948272313	0.938570691167124
Merged-chr2-140065909-2	chr2	140065409	140066409	+	881.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289611, intron 1 of 6)	B3|SINE|B2	896.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	6.43821484050302	6.55705868384321	6.02584860866069	6.82630915768436	6.69090273955166	6.23049396123301	0.392341362378625	0.220135259435664	0.614507907782981
Merged-chr5-122768127-2	chr5	122767627	122768627	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	11283.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	2.92921868173714	3.00086026709957	3.20489162119445	2.98936104610825	2.74035283302356	3.11049333537527	-0.447393105727486	0.527631448300568	0.850108008834301
Merged-chr2-157049128-4	chr2	157048623	157049623	+	978.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 3 of 14)	intron (NM_001164663, intron 3 of 14)	30142.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	3.38263325353051	3.39159706529007	3.62755191160841	3.07200119141538	3.00897541230267	3.22255378823186	-1.56756354600801	0.0159456871070179	0.138656989528764
Merged-chr12-33146149-4	chr12	33145690	33146690	+	809.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 1 of 5)	intron (NR_015602, intron 1 of 5)	1396.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	2.60528487859798	2.73329088036138	2.84125497537108	2.75621387592783	2.70593246117097	2.91349362681156	0.334604304377897	0.648377639771136	0.901766609676507
Merged-chr18-35467851-4	chr18	35467413	35468413	+	862.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360814, exon 1 of 10)	5' UTR (NM_001360814, exon 1 of 10)	2039.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	3.68737724829917	3.59336565604714	3.82590558052953	3.57211796631302	3.31769030190179	3.6472892923467	-0.67119119568972	0.24553977492308	0.642645689440908
Merged-chr11-69935667-6	chr11	69935227	69936227	+	944.922241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347634)	promoter-TSS (NM_001347634)	-172.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	3.01157291281856	2.73492836801693	2.61728617964285	2.91571141627452	2.62780620332181	2.88663660291236	0.0591186443189822	0.939189058097797	0.986609421918463
Merged-chr6-134538940-3	chr6	134538436	134539436	+	870.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27977.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	6.32063968564375	6.40353518114033	6.0131421981502	7.36968045242721	7.543344525162	6.85246130551277	1.59770857587466	1.93730311933806e-07	1.27834352064933e-05
Merged-chr2-158076915-4	chr2	158076427	158077427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291136, exon 6 of 6)	3' UTR (NM_001291136, exon 6 of 6)	14870.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	6.35759467583577	6.07933528959828	6.20281443650448	6.37097782749803	6.31185947531126	6.40047307101423	0.231714949104057	0.407219192042266	0.781408565727585
Merged-chr10-117412244-2	chr10	117411744	117412744	+	935.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	35191.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.47650495324781	6.34034740290373	6.13883021030829	6.36034376035519	6.72260109321009	5.69505421729578	0.0217212240208566	0.952723086717659	0.989274422979734
Merged-chr6-30048019-4	chr6	30047479	30048479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	-9.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	7.94584487202919	8.19691396554842	7.92918519077321	8.01840637321689	7.77568904843659	7.65891845694796	-0.290120112795074	0.217270858356139	0.610996579127954
Merged-chr7-90134228-7	chr7	90133728	90134728	+	859.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B1_Mus2|SINE|Alu	4015.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	7.37634293037823	8.11796207669079	7.58477812498258	7.34901032037123	7.50124275825172	7.18970893302579	-0.554787738645602	0.0544141385233421	0.299589203880781
Merged-chr7-81212407-4	chr7	81211887	81212887	+	969.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1417.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	7.31149167745458	7.400917051105	7.4631975376992	7.13748249297996	7.31347498044228	7.33153697725644	-0.188817617354622	0.416743472304991	0.787630858640525
Merged-chr9-107872843-4	chr9	107872350	107873350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011251)	promoter-TSS (NM_011251)	-31.0	NM_029169	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	7.41726588716229	7.6032007913677	7.71635970828115	7.57124206081444	7.29739318012859	7.5373915245792	-0.162364770850758	0.498291035397841	0.833856267944725
Merged-chr2-32602897-4	chr2	32602400	32603400	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	3191.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	3.96472109770029	3.95403865027167	4.32055639644309	3.95583569862105	3.77775953267574	3.7332298065098	-0.774854854237947	0.141508824031918	0.502183459290427
Merged-chr12-55303315-4	chr12	55302803	55303803	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021529)	promoter-TSS (NM_021529)	-303.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	7.51156430152564	7.9685714693661	7.61450291641173	7.61016840558756	7.75984750034414	7.53417761449218	-0.109606141006401	0.659697789639599	0.905586631697299
Merged-chr17-31042906-2	chr17	31042406	31043406	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14788.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	2.87201134970484	2.79598302087683	3.14116570770673	2.92960381752395	2.85484992920283	2.92682036418415	-0.168546037933008	0.810557942208348	0.955054272231421
Merged-chr16-87716529-4	chr16	87716030	87717030	+	983.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	17576.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	4.94957458259002	4.88232527109355	5.18628405778393	5.23705969515546	5.03201966843107	5.36942417721301	0.43584659959046	0.247022878372623	0.644045601901006
Merged-chr17-21534115-2	chr17	21533615	21534615	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-1424.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	3.24154922518222	2.98201348940301	3.05493040222494	3.20686953624258	3.11313535048184	3.41010313580597	0.6085625324372	0.356485289075928	0.743309425646156
Merged-chr14-47649267-4	chr14	47648790	47649790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-21.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	7.28180359209118	7.24411174454144	7.03925253113168	6.87695415179363	6.54577411228954	6.62833051895841	-0.779568557471248	0.0026304059254104	0.0380711108438943
Merged-chr6-54082718-4	chr6	54082216	54083216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	42784.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.02126387628554	5.6457632186541	5.76199721831354	5.65601118377618	5.78614200321978	5.79828239631918	-0.134071274434548	0.675332764519038	0.912152821313949
Merged-chr8-120323225-4	chr8	120322715	120323715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94985.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	5.23485153376622	5.03459356525894	5.1100545707366	4.94125928550323	4.65186148335986	4.55229107733284	-0.879635657003203	0.0277417051534271	0.198830801268517
Merged-chr6-113670565-2	chr6	113670065	113671065	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 3 of 11)	intron (NM_001113553, intron 3 of 11)	-26485.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.49028157186471	4.198730648453	4.34499068013273	4.059526667747	3.87169833312057	4.32679505291191	-0.730916702961217	0.138548543872045	0.497422602222815
Merged-chr9-71188795-3	chr9	71188288	71189288	+	923.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110517, intron 5 of 5)	MLT1D|LTR|ERVL-MaLR	20012.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	2.57076948232275	2.43322547104473	2.32111784782681	2.70405471781487	2.47968955274107	2.72598085746948	1.10567442807366	0.185747585305693	1
Merged-chr14-32166498-2	chr14	32165998	32166998	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	709.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.80754593084485	7.04632326279534	6.87775657129095	7.16689050490971	7.50965386872594	6.90642036055903	0.47490922598751	0.0868787747498897	0.390564148210184
Merged-chr8-104340714-4	chr8	104340214	104341214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024217, exon 1 of 5)	5' UTR (NM_024217, exon 1 of 5)	120.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	7.61503819784448	7.98337802654311	7.87774204503073	7.45723043398718	7.57230309979515	7.74801530500441	-0.346851033975275	0.148487612633245	0.514056886706346
Merged-chr12-85379432-4	chr12	85378935	85379935	+	958.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-4718.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.45750378098574	6.55033550611025	6.59933163915887	6.3052271971905	6.40450597810176	6.64205516505208	-0.135255257237858	0.619242360737571	0.889727834511877
Merged-chr6-120463243-4	chr6	120462723	120463723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008359)	promoter-TSS (NM_008359)	26.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	7.07557197715279	7.24281939032296	7.29948831127619	6.96115270492462	6.69683387814068	6.88139673135942	-0.548677658487813	0.0284063532453094	0.201822609202602
Merged-chr14-46883617-4	chr14	46883066	46884066	+	960.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 1 of 12)	CpG	601.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	7.5438492068451	7.78960167268908	7.40638313686593	7.43302674041988	7.61251029594672	7.51585093010772	-0.10503877886704	0.661201519617219	0.906299831450979
Merged-chr3-95891620-2	chr3	95891119	95892119	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153513, intron 1 of 5)	intron (NM_153513, intron 1 of 5)	386.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	6.04823608068449	6.43394124932622	6.59221969366698	6.42579426048853	6.47467007698536	6.40974592466214	0.112240048209384	0.703327957478092	0.922108924938678
Merged-chr12-4450188-3	chr12	4449704	4450704	+	786.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	26978.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	3.2632373267284	3.58017012325906	3.30199563631058	3.38164160367697	3.23203560995262	3.63815458939064	0.101926531014988	0.871842920299045	0.970261003150518
Merged-chr17-29432120-4	chr17	29431634	29432634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-58911.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.97768077244212	6.73985607820897	6.39616326926611	7.15553302003472	7.47180408679882	6.98545384740961	0.747197125421585	0.0112581768847289	0.109355309140255
Merged-chr9-110660366-1	chr9	110659866	110660866	+	558.0	f0_c57.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	3863.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	3.94522634824381	4.02501022436896	4.24437461533532	4.8574369617958	4.88267162167772	4.95085658454857	2.14240626734306	1.7651023148662e-06	8.89047417768687e-05
Merged-chr7-28741058-2	chr7	28740558	28741558	+	625.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	-237.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	4.71545338574915	4.77340562170604	4.77854660643355	5.0452268265691	4.90405460919592	4.76586655502012	0.359370513649977	0.356953646510027	0.743650451146878
Merged-chr15-79349069-2	chr15	79348569	79349569	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	667.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	4.38132953740072	3.86499206019069	3.63019548180951	4.17522321033711	3.66542189930048	3.76414455632975	-0.337719409791944	0.579248953499752	0.872443604358899
Merged-chr7-92638343-4	chr7	92637844	92638844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	6.46327343869325	6.73799851447271	6.64093550359339	6.42310012840195	7.06702594798742	6.49005938849207	0.141446567635432	0.648633593567523	0.901893237722341
Merged-chr15-67177959-4	chr15	67177482	67178482	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.33098107646198	6.61842533307791	6.7932779593588	6.45647866198053	6.58164718361781	6.62264004059536	-0.0521809019140421	0.852187975088486	0.96531854415899
Merged-chr11-117483122-4	chr11	117482630	117483630	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1238.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	4.05019801159678	3.94726022971325	4.25531807196045	3.65756227966781	3.55969007528561	3.97235753141418	-1.11708763676844	0.0398470840817522	0.248377868924596
Merged-chr1-91021492-2	chr1	91020992	91021992	+	698.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	B3|SINE|B2	22765.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	2.7086964893236	2.63265624600191	2.50509628104442	2.81304063592948	2.46347264920491	2.89579479353418	0.610272685166217	0.449055651297748	0.807560626622209
Merged-chr4-3607415-4	chr4	3606909	3607909	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32530.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	4.26494107680598	4.31543080162097	4.4859841299789	5.06842073873432	5.38142492081323	5.19132404855119	2.03048033695563	7.34514310919983e-07	4.1323506952691e-05
Merged-chr13-21408557-4	chr13	21408086	21409086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5831.0	NM_023685	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	6.13198922864044	6.45570140849142	6.06282272886985	5.88554181351884	6.0976626425758	5.77449222131355	-0.510442999517462	0.103249157703607	0.428352196127392
Merged-chr9-22484959-6	chr9	22484438	22485438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178415, intron 2 of 22)	PB1D10|SINE|Alu	9223.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	7.15183431060701	7.58023436821419	6.83519813345342	6.64608001300029	6.91402744955198	6.27522830303075	-0.892016490326136	0.0063733065372593	0.0729992454908167
Merged-chr12-102720191-2	chr12	102719691	102720691	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15322.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	2.97777806597758	2.86884166243271	3.0122537408282	2.91055452650998	2.70096016924112	2.90695035685882	-0.564365702663177	0.424732432135364	0.792828791572133
Merged-chr7-96483585-1	chr7	96483085	96484085	+	853.0	f1_balb.idr	intron (NM_011858, intron 3 of 32)	MLT1J|LTR|ERVL-MaLR	-141621.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.0454928070657	6.42988017121704	6.7082421995684	5.91534216137129	5.79208072694418	6.19574261720875	-0.752165726134321	0.0229222084497803	0.176815715276659
Merged-chr1-55529132-6	chr1	55528635	55529635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123189.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	5.53082794824437	5.60303893382815	5.53516728222413	4.8099701604682	4.49828460242994	5.0837872316522	-1.59081374006068	4.28219112325286e-05	0.00138805048299035
Merged-chr11-111096807-4	chr11	111096318	111097318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30654.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	5.56452537218203	5.6638332972294	5.48419609018738	5.71283919958885	5.72860947409902	5.48697806879703	0.144346419482158	0.655490414192734	0.904286601743332
Merged-chr5-36710407-3	chr5	36709847	36710847	+	672.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14326.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	3.37643209113867	3.26475862145938	3.43320218314091	3.34686616074123	3.35860193180069	3.33825244985927	-0.0298435810788128	0.960158861305545	0.990335445597503
Merged-chr4-139223623-2	chr4	139223123	139224123	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	29512.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	3.94794643070072	3.97334556180661	4.32397373006654	4.28619067576029	3.94481101483334	4.26406281359382	0.239976714746811	0.634807704581385	0.896354115104213
Merged-chr11-8624757-4	chr11	8624267	8625267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	CpG	39768.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.34076097287435	6.19802032268316	5.89568159362684	5.84053426899434	5.50638848032741	5.33720265361877	-1.02917217790115	0.0024860850073426	0.0365674670834299
Merged-chr16-3723973-1	chr16	3723473	3724473	+	558.0	f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-5849.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	3.48239309882287	3.36660981584678	3.44334458190015	3.89120706023978	3.53934074017551	3.78307758819692	1.10092349175822	0.0568815785387424	0.307517535381176
Merged-chr12-21325687-1	chr12	21325187	21326187	+	618.0	f1_balb.idr	intron (NM_001291871, intron 18 of 18)	intron (NM_001291871, intron 18 of 18)	9295.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	2.64474353699666	2.50261014740657	2.73410111535129	2.69691324847985	2.396717131123	2.80724519576345	0.0707818048908616	0.929581746222113	0.984182996007117
Merged-chr13-52030690-2	chr13	52030190	52031190	+	863.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66051.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.27596370573775	3.25518775761603	4.15006569026476	3.56127244214829	3.2183540729495	3.43789919557512	-0.746758271934209	0.285323121725181	0.68286396469164
Merged-chr3-94954020-4	chr3	94953525	94954525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017395)	promoter-TSS (NM_017395)	-83.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	8.3402743891058	8.61930729109041	8.05423737374052	8.46269636493109	8.78647175737391	7.82693627001641	0.089363072991641	0.770439427864034	0.943392092118189
Merged-chr3-9832924-3	chr3	9832414	9833414	+	930.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	765.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.57687455023698	5.95534809741472	5.82761966724628	6.15417478183543	6.54871568876303	6.43883686138979	1.01763861136508	0.00115392342490323	0.0201224090310074
Merged-chr2-60176146-5	chr2	60175545	60176545	+	885.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33891.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	4.65876279428493	4.49698285721333	4.45607995042676	4.34061596304823	4.33584586334256	4.3923816279084	-0.48409850563553	0.264000143206131	0.661879105198449
Merged-chr2-179648693-1	chr2	179648193	179649193	+	549.0	f0_balb.idr	intron (NM_001316723, intron 2 of 5)	intron (NM_001316723, intron 2 of 5)	206262.0	NM_009867	12561.0	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding	2.72620910268164	3.06350728739109	2.93348591902646	2.7350923072722	2.44846970961591	2.49236772598831	-2.0014325605607	0.0177225766472194	0.149082569700845
Merged-chr11-97128196-2	chr11	97127696	97128696	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12865.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	3.27153535519007	3.04015726633235	3.18045690712515	3.45242651860652	3.17031636220953	3.36750500244231	0.675397819261809	0.291161511586374	0.688952483900122
Merged-chr14-19986891-4	chr14	19986417	19987417	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9668.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.28918359817893	7.31898118475289	7.14432206807926	6.72856076215316	7.2312056366413	7.23788127190163	-0.252173029267614	0.347055166716454	0.735199858635661
Merged-chr5-144768649-4	chr5	144768096	144769096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-196.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	7.32001080520383	7.52860529249328	7.37521774823029	7.40295400122594	7.46360007250047	7.28605722809491	-0.0327006155643211	0.888019022739329	0.97399637298939
Merged-chr2-120655391-1	chr2	120654891	120655891	+	541.0	f1_c57bl6.idr	Intergenic	Intergenic	45796.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	3.03362677036761	3.0095353667016	2.92442906490212	3.23265629372942	2.78470101608274	3.05990489708588	0.204415655434057	0.772577584093211	0.943821638461157
Merged-chr16-22517771-4	chr16	22517246	22518246	+	953.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_130988)	TTS (NR_130988)	6266.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	3.153470717861	3.01390226213497	3.21762514484688	2.81426809956184	2.81510244952863	3.06511326374593	-1.09826079240679	0.115548576686401	0.453816953125747
Merged-chr8-122408445-2	chr8	122407945	122408945	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 11 of 18)	intron (NM_001029993, intron 11 of 18)	-13575.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	4.30667394691925	4.48874746704819	4.26121679439722	4.28895035776497	3.87680130473876	4.09163145073121	-0.740090640740299	0.129436911891604	0.481228589205873
Merged-chr16-16527411-4	chr16	16526906	16527906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301818)	promoter-TSS (NM_001301818)	5.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	7.98242480840351	8.32961401938632	7.71314481942021	8.1119745802532	8.34902264551347	7.67358673786747	0.0601423114092376	0.833467829400854	0.96108264611081
Merged-chr15-66825586-1	chr15	66825086	66826086	+	740.333313	f0_balb.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	6243.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	4.7526803273158	4.56516035101262	5.02592117370574	4.713146162361	5.04877161119288	4.88298508211542	0.250083173895028	0.54757209116997	0.859389836719927
Merged-chr7-24255642-2	chr7	24255142	24256142	+	641.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018791, intron 1 of 3)	intron (NM_018791, intron 1 of 3)	848.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	2.69978947164329	2.81363507564045	3.14966871798024	3.19038286781681	2.9326814379032	3.16580748898987	0.945838467063364	0.193712040950763	0.581008752695408
Merged-chr17-81518502-4	chr17	81518000	81519000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219887.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.62899818120305	5.01183192954114	4.87090868934479	4.57757577483935	4.53083039815308	4.82775634565821	-0.483604167299162	0.24938446964366	0.646321028783083
Merged-chr13-24697077-3	chr13	24696579	24697579	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 13 of 14)	UCON28c|Unknown|Unknown	58431.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.14260483870147	3.48927247451929	3.47372420674085	3.07370386610231	3.26087912209835	3.21786959365415	-0.77427285192818	0.233820547482972	0.630121355137759
Merged-chr8-84990533-4	chr8	84990053	84991053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-42.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	6.77268387295638	6.5968317703158	6.73241589488291	6.72161185419718	6.70908488056168	6.72868057393076	0.0286367017670082	0.909689788970064	0.979601081144038
Merged-chr4-149303073-2	chr4	149302573	149303573	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4625.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	7.00349402945362	6.9421629549512	6.66526367406456	6.66767682848265	6.75191837810179	6.65704188088174	-0.298266267106286	0.250240602137709	0.647491138213649
Merged-chr12-86047799-7	chr12	86047307	86048307	+	942.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	31234.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.6359021971687	6.71222425192327	6.40209326340597	6.38098730501913	6.22119998887222	6.24038028878388	-0.514148568918976	0.061551422979139	0.321848224926048
Merged-chr7-116504846-1	chr7	116504346	116505346	+	855.0	f0_balb.idr	intron (NM_001130479, intron 1 of 13)	intron (NM_001130479, intron 1 of 13)	477.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.52608330016822	6.5308112254183	6.45120259114099	6.18662850118745	6.10839255875715	5.96212550014933	-0.680422531975137	0.013735413090433	0.125166603047722
Merged-chr6-28422769-2	chr6	28422269	28423269	+	808.166687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-835.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	5.50702080411501	5.87873096625834	6.0458616777367	6.00194549069169	6.08416166416816	6.37660310063259	0.58391170584801	0.0763853035871281	0.363941155570187
Merged-chr1-89551992-2	chr1	89551492	89552492	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97181.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	4.81332375995845	4.88979889615305	4.67679130521884	4.55387199203416	4.33571364126222	4.35076123737073	-0.93498287897626	0.0272344481160549	0.196558587808197
Merged-chr7-140855836-2	chr7	140855336	140856336	+	911.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_018742, intron 1 of 3)	intron (NM_018742, intron 1 of 3)	547.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	6.25097394559684	6.3245088680376	6.2222209450988	6.36956921528821	6.27489178405924	6.26186489883181	0.0564410093299707	0.835826795579631	0.961862609869165
Merged-chr15-88734319-4	chr15	88733823	88734823	+	938.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033274)	promoter-TSS (NM_001033274)	-104.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	5.03971852674726	5.06817383855254	5.25529211857631	5.3021876112307	4.71722984615575	5.34795353415298	0.0486332685590335	0.905089150607717	0.978232606263309
Merged-chr6-115481839-2	chr6	115481339	115482339	+	609.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	59773.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	3.51683288488826	3.59254028280589	3.73519469760364	3.76901250423453	3.51335313908679	3.94713729507339	0.449683813730798	0.427380422050702	0.794314723207389
Merged-chr2-28841233-2	chr2	28840733	28841733	+	720.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	827.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	5.46624327718366	5.28938707655928	5.4591093689335	5.41823522849271	5.2229875978525	5.49320038906266	-0.0599841203864591	0.861214776310542	0.967789299492425
Merged-chr17-84146053-4	chr17	84145534	84146534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41913.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.6062862378759	5.3607130399837	5.71556124375914	4.95001346064586	4.9895322159075	5.70510318054947	-0.611185483672919	0.134289936055683	0.489993860307513
Merged-chr2-59201613-2	chr2	59201113	59202113	+	712.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	40763.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.40544301140653	4.1910286931671	3.95932893826957	4.21759601807277	4.35678657444341	4.08179325722994	0.0653687565221076	0.894937298908571	0.97562294541392
Merged-chr6-83583102-4	chr6	83582595	83583595	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_078345, intron 6 of 7)	Lx8|LINE|L1	-10591.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	2.72136658431937	2.61410466239722	2.90890504559541	2.85286402414137	2.65946256373656	2.86367879966605	0.225246069052096	0.760734765717207	0.941002855722266
Merged-chr8-123024455-3	chr8	123023940	123024940	+	938.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17844.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.1701979296675	4.97601565001345	5.27673421821464	4.91852970781332	5.12349109145224	5.18469428834598	-0.126894795961593	0.733295442205458	0.932039456283818
Merged-chr14-45659083-4	chr14	45658573	45659573	+	871.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-930.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	7.43346787761753	7.69432914968048	7.57511623124554	7.55855082407622	7.90991992551811	7.62236445846388	0.202660661927008	0.40094334875986	0.777082226861326
Merged-chr5-129501244-4	chr5	129500659	129501659	+	860.78125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172276)	promoter-TSS (NM_172276)	-72.0	NM_001359952	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	7.08044465617067	7.84604969577081	7.52667817214682	7.59564986388087	7.42606333081005	7.27074194343598	-0.126124536524965	0.662719185505055	0.906804932599005
Merged-chr14-55590194-4	chr14	55589699	55590699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029855, intron 2 of 10)	MIR3|SINE|MIR	822.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	6.52597442591823	6.26128657662773	6.54245761068689	6.62132435565273	6.9153287648608	6.73240956685882	0.513910888863934	0.0601566264951496	0.317568365525213
Merged-chr1-97770065-4	chr1	97769570	97770570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	22.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	6.71918472352413	7.08338992458245	6.93885041782382	6.99293173469127	7.2355495614767	6.72250352926625	0.135942954890516	0.626375224463045	0.892899379437067
Merged-chr5-43102792-4	chr5	43102294	43103294	+	970.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130669.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.16694973196607	3.85797590345874	3.84762921286037	4.16813447761204	3.50895077826644	3.86642475073171	-0.281432183753324	0.626704206569235	0.892916235446326
Merged-chr7-29239261-2	chr7	29238761	29239761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357664, intron 1 of 7)	intron (NM_001357664, intron 1 of 7)	804.0	NM_001357664	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	4.8318508560493	4.79334947242986	4.56624510458	4.98058020354706	4.80296981081467	4.54497203240795	0.119269221595281	0.775564264792618	0.944682505926692
Merged-chr11-8608399-2	chr11	8607899	8608899	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	56136.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.38939012029352	5.48155405803538	5.37260288982345	5.10516323406455	5.02812287545566	5.00160798135795	-0.755211003933859	0.0306963722135413	0.211824824941478
Merged-chr17-29360893-4	chr17	29360406	29361406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013710)	promoter-TSS (NM_013710)	-8.0	NM_013710	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	4.7755447995997	4.83404771370366	5.02354630382743	4.50156680053927	4.62235736722915	4.88487801506198	-0.471318146578538	0.251464507138539	0.648942676239293
Merged-chr4-107277079-4	chr4	107276556	107277556	+	851.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355460, intron 4 of 5)	intron (NM_001355460, intron 4 of 5)	23153.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	3.14341811178233	3.0883543960543	3.15864206532168	3.05330420111525	3.02360300780157	2.99378944649298	-0.471350175722113	0.470460471093181	0.819495618343931
Merged-chr10-94575184-2	chr10	94574684	94575684	+	890.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168684)	promoter-TSS (NM_001168684)	-73.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.78171670405211	6.81212052543314	6.43045913632364	6.43096753214577	6.04080718596911	6.50847259859488	-0.584105497541682	0.0505587622894639	0.286338350602075
Merged-chr2-6442513-4	chr2	6442028	6443028	+	954.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080548, exon 15 of 15)	3' UTR (NM_001080548, exon 15 of 15)	89792.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.27354528298262	3.43253866212154	3.3973996695327	3.47918786343608	3.04263089740826	3.6249154492248	0.117574741490036	0.857409715144728	0.966747388099837
Merged-chr10-8849636-4	chr10	8849134	8850134	+	959.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RSINE1|SINE|B4	36436.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.73064995147504	6.24690549483592	6.42890664849744	6.55933566464854	6.19236721145696	6.29476107522611	-0.212121181254854	0.484261032777773	0.826755140042123
Merged-chr6-24712655-1	chr6	24712155	24713155	+	665.0	f0_balb.idr	Intergenic	Intergenic	-20590.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	3.13752858546847	3.07834752465216	3.0356887542109	2.69619192313485	2.91141330688858	3.10760752295786	-0.813687360100058	0.257612113154782	0.655035714197014
Merged-chr7-84211647-3	chr7	84211175	84212175	+	958.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59782.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	3.00564016864714	3.22080603265751	3.2084803016267	4.29711565950293	4.25925941701182	3.88914532322739	4.24948111250326	5.54523981566941e-08	4.24478670268832e-06
Merged-chr16-31945641-2	chr16	31945141	31946141	+	663.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	2880.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	3.1040074206083	2.83772578936071	3.22519684040552	3.00897601595695	2.81884191335347	3.13095889097829	-0.337132888046346	0.632734354653884	0.895673094742185
Merged-chr12-69371409-4	chr12	69370868	69371868	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-782.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	7.95645803096065	8.24453715396927	7.84032246434899	7.98138763933358	8.2258963148229	7.68101137124038	-0.0559579008724675	0.828130024787836	0.959633697141491
Merged-chr2-106974479-4	chr2	106973970	106974970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025102)	promoter-TSS (NM_001025102)	-73.0	NM_001025102	212772.0	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	5.65262800336259	5.9122257570954	5.78583909735149	5.78324281241157	5.76377648759997	5.45118447731521	-0.188437587732642	0.56248392287058	0.865745518569294
Merged-chr10-62287867-4	chr10	62287368	62288368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 13 of 21)	intron (NM_010438, intron 13 of 21)	35430.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	3.90926551400683	3.70366121063696	4.56092798309039	3.82828431540731	3.76878626733795	4.12368069307258	-0.559375507464247	0.340099544702114	0.729694263203895
Merged-chr18-11676802-3	chr18	11676311	11677311	+	841.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045527, intron 3 of 17)	PB1D9|SINE|Alu	19462.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	4.65599090441481	4.79991568758638	5.03826859326795	5.07536773512314	5.36919104867766	5.56906465551214	1.0893054819272	0.00548556247163468	0.0654198017576808
Merged-chr3-30904812-4	chr3	30904304	30905304	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001165955, exon 14 of 14)	3' UTR (NM_001165955, exon 14 of 14)	48854.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	4.31772924230847	4.5855672773655	4.44074583444848	4.45666366058272	4.58096304225717	4.55005070288192	0.190775398926381	0.659143542454437	0.905229020277098
Merged-chr19-37173513-2	chr19	37173013	37174013	+	894.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-330.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	5.71868420430006	5.57558103933957	5.59029968807804	6.01502514152347	6.24630198695075	6.14376622497474	0.900222287432762	0.00296088272997206	0.0417079956315414
Merged-chr4-47400072-2	chr4	47399572	47400572	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	13856.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	2.50749753781854	2.62058774439033	2.77264945281372	2.53403346615109	2.42771778689933	2.40591941052727	-1.0556888403615	0.19140394636801	1
Merged-chr8-13889730-3	chr8	13889274	13890274	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	497.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	6.43204736480796	6.61834479012123	6.13925008492715	6.21079866798461	5.88442681068547	5.85984085030509	-0.711935370720153	0.0221566737032398	0.172817070256765
Merged-chr3-138958748-4	chr3	138958259	138959259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 7 of 13)	intron (NM_001356388, intron 7 of 13)	116442.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.99260101353064	4.39449591745393	4.46059455447877	4.35803675439389	4.36211759666163	4.40254301531507	0.209677416225204	0.656741076985532	0.904693205515276
Merged-chr7-44869288-4	chr7	44868750	44869750	+	998.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133949, intron 1 of 11)	CpG	538.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	6.19806208192824	5.58880514866415	5.8508058068814	6.08614950428552	5.30011305170216	6.13462493904341	-0.0301642951112812	0.939652150974584	0.986728675730885
Merged-chr15-64223603-3	chr15	64223097	64224097	+	840.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	3.98970903735752	4.16144383796406	4.10888505672943	3.99778328423831	4.092441801509	4.03434165753737	-0.128054071933495	0.790971278745293	0.949694766870106
Merged-chr11-114821465-3	chr11	114820960	114821960	+	786.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22536.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	3.44590678475881	3.33271653115894	3.45054146043757	3.40221180978687	3.26244488486966	3.35547450209445	-0.274876685022142	0.644582512151646	0.900287351502017
Merged-chr17-25114411-2	chr17	25113837	25114837	+	894.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027880, intron 2 of 20)	B3|SINE|B2	1568.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	3.02718799958155	3.0524350126803	3.11996162336752	2.82389246038231	2.77795298364744	2.960080385025	-1.0494522458136	0.130428805741414	0.482621962384113
Merged-chr4-95849798-4	chr4	95849311	95850311	+	957.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	117224.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.88715372245317	4.73583779911204	5.28580361195276	5.21007172386971	5.16540940820534	4.8387142398319	0.237520989967814	0.56130029667837	0.865407801976397
Merged-chr8-117054308-4	chr8	117053810	117054810	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	28139.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	5.89213559867418	5.64543204655511	5.89468279572121	5.96613160184365	5.77237616491216	5.64600466086649	-0.00965917536258741	0.975739954446178	0.994540154302743
Merged-chr19-41900706-4	chr19	41900210	41901210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4557.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	4.45921149746127	4.42235469894598	4.32312281756306	4.44453210609493	4.31248784926704	4.29947486366675	-0.137497541654676	0.755082398687513	0.939216626504082
Merged-chr18-38404470-4	chr18	38403978	38404978	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR48|LTR|ERV1	-14429.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	5.48777634857008	5.1433584674498	4.60461349131244	4.60812841770979	4.22423194537865	4.44011848052051	-1.62495420259889	0.000577776010092483	0.011771691049896
Merged-chr3-87028953-4	chr3	87028462	87029462	+	949.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-29622.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	5.09844801758767	5.14813774372331	5.25342952597034	4.97953153079876	5.34620322340329	5.22202512005263	0.0695838961261097	0.849275520254448	0.964615059351403
Merged-chr5-140721878-2	chr5	140721378	140722378	+	569.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2249.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	4.37084364139935	4.09011354966681	4.07371166902233	3.73141091001253	3.81859190731831	3.60845655675375	-1.40988975392417	0.00875632654418042	0.0918462218859685
Merged-chr5-24603135-4	chr5	24602623	24603623	+	830.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1121.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	3.38852235270634	3.714415665218	3.68017070030538	3.11347072363027	3.06278563490346	3.49668008329864	-1.46791030137947	0.0256988398246619	0.190041687178321
Merged-chr7-128461355-3	chr7	128460861	128461861	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009383, exon 1 of 12)	5' UTR (NM_009383, exon 1 of 12)	152.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	7.77823696502344	8.01345457711647	7.54675896006667	7.99934727609126	7.75177483499203	7.79032358913186	0.0721318833475494	0.767462012328848	0.942617496111852
Merged-chr5-135487161-3	chr5	135486676	135487676	+	865.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	(CCA)n|Simple_repeat|Simple_repeat	57946.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.62275322102385	4.71510209989223	5.00058647658871	4.9221122629017	4.87525429828244	4.92705850141121	0.291278830842754	0.462685457978662	0.815417706347451
Merged-chr10-127574227-2	chr10	127573727	127574727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 27 of 88)	intron (NM_008512, intron 27 of 88)	-39668.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.54656269245038	2.36657980199588	2.64175436304465	2.5748830105805	2.60325299461977	2.83405975340231	0.871028091318619	0.273353218791409	1
Merged-chr3-142619834-4	chr3	142619333	142620333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-830.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	7.69926430184811	7.83451177446562	7.68033858355275	7.42653997889457	7.76227698875044	7.64587723536783	-0.173279232258686	0.45559121813477	0.811069747178527
Merged-chr1-97770452-4	chr1	97769937	97770937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	265.0	NM_001310773	252876.0	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	6.35851409146619	6.78136385131844	6.93154894766955	6.67440193543348	6.95513011019542	6.59584966628715	0.0824325055273667	0.78106156036534	0.946145838976425
Merged-chr9-108404593-3	chr9	108404087	108405087	+	752.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001135198, exon 7 of 7)	3' UTR (NM_001135198, exon 7 of 7)	11753.0	NM_053216	112418.0	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	2.2614237064979	2.29911366119949	2.59635530847929	2.14883719189746	2.34204171714506	2.36275556620437	-0.658924556181393	0.453644700396382	1
Merged-chr6-124835386-1	chr6	124834886	124835886	+	554.0	f0_balb.idr	intron (NM_013530, intron 9 of 9)	intron (NM_013530, intron 9 of 9)	4889.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	6.64408841722397	6.93281278984595	6.53879851871258	5.9815330623226	6.27999316843304	5.91887188845168	-1.04274333369081	0.000543915914030874	0.0112163953840597
Merged-chr17-71483479-2	chr17	71482982	71483982	+	993.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8139.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	4.13478469386179	4.3589570356018	4.50407266184482	6.31856346599697	6.44218475199954	6.06122269606245	4.25597035986962	4.34899668666487e-23	5.37479718838227e-20
Merged-chr1-93754878-4	chr1	93754371	93755371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025920)	promoter-TSS (NM_025920)	-33.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	6.58143339368984	6.58814279801171	6.82136323119221	6.61375463611043	6.11754756943289	6.26846654895303	-0.50610080957858	0.0851387952698209	0.386252608791229
Merged-chr5-64382604-4	chr5	64382091	64383091	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85351.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.79882394128908	4.81912240031179	4.94337482119424	4.76184342749729	4.85083582769891	5.34672117521847	0.325646448132648	0.429397571038475	0.795682190695026
Merged-chr17-5625672-7	chr17	5625094	5626094	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	RMER15|LTR|ERVL	132994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.10272283182794	6.2642186564807	5.98233641707711	5.9370646651188	5.93053144261248	6.02023468261863	-0.292741840848264	0.317818544315023	0.711605105342836
Merged-chr12-104751642-4	chr12	104751118	104752118	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	CpG	334.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	6.46406356880354	6.17052410783125	6.03930986500208	6.35705952359656	5.69294628895984	6.27137917225297	-0.185116445489836	0.588036173487755	0.876182349656829
Merged-chr14-75147341-2	chr14	75146841	75147841	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	10916.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.78643949063134	4.63916396233611	4.3933767162584	4.86328743445594	4.83511571328093	4.68534659445526	0.403269185267063	0.336179510814031	0.726227341393994
Merged-chr11-17212272-1	chr11	17211772	17212772	+	958.0	f0_c57.idr	promoter-TSS (NM_025443)	promoter-TSS (NM_025443)	379.0	NM_178909	103784.0	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	6.14188057627897	6.34938520096855	6.34333423843348	6.00728450916615	6.15099608946768	6.24876151609389	-0.240935190541128	0.399022940226179	0.775600374003455
Merged-chr10-12867015-4	chr10	12866501	12867501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5266.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	6.05200372338976	5.94272741054246	5.9292853253228	5.96209511416455	6.30795272843304	5.96662923499907	0.212635835128122	0.484186375784915	0.826727999240278
Merged-chr9-123968756-4	chr9	123968254	123969254	+	892.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009912)	promoter-TSS (NM_009912)	-62.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	3.32620348432698	3.14302173456645	3.77541527442797	3.25522102020356	3.19982091527723	3.75267412929586	-0.0562623855029394	0.934403295623388	0.985707838096286
Merged-chr6-97430472-4	chr6	97429989	97430989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	28797.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.79488837364712	7.770085811891	7.54282248754488	7.69772247018314	7.88395891981042	7.39615415412201	-0.0396920265983788	0.873175636859304	0.970397726762468
Merged-chr15-76243465-4	chr15	76242957	76243957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163575)	promoter-TSS (NM_001163575)	-17.0	NM_001163575	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	6.76653314547988	6.60280328640244	6.94304849737579	6.87516798460918	6.91480863304523	6.58596706995455	0.0597063896249106	0.824687726402771	0.958596193929081
Merged-chr7-3665557-4	chr7	3665039	3666039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_181820)	TTS (NM_181820)	301.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	5.89330209223928	6.21171610060709	6.11574471861088	6.12289094492449	6.28435973823546	6.19734337539313	0.2135025899587	0.465804033937311	0.817213965217222
Merged-chr19-44332063-4	chr19	44331574	44332574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1252.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	4.61105035608259	4.53521466470603	4.3108115486667	4.89803562940325	4.75427029161426	4.33197060815816	0.461871797064142	0.311155664050857	0.706465219571547
Merged-chr8-126537034-2	chr8	126536534	126537534	+	772.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56402.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.93376824356464	5.53416331306204	5.0226592906627	5.15075731745412	4.72585141781647	4.75589333708044	-1.34589081219224	0.00200389623824634	0.0310272047249723
Merged-chr19-55806470-3	chr19	55805970	55806970	+	772.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	64660.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.48801880501919	4.60615901045067	4.37770037991986	4.33807347692913	4.14490014842585	4.40145744198712	-0.544880658462321	0.224328179748285	0.619090360474606
Merged-chr6-24527669-4	chr6	24527186	24528186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080847)	promoter-TSS (NM_080847)	4.0	NM_001311068	68202.0	Mm.275780	NM_026614	ENSMUSG00000023089	Ndufa5	2900002J19Rik|CI-13kD-B	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding	5.7636426301236	5.78094701724714	5.84354415259608	5.8386989623402	5.74828408586587	5.49432549942394	-0.149976601436611	0.634893002310329	0.89636184389676
Merged-chr15-25858728-4	chr15	25858225	25859225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	15427.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.46318890640362	3.8968098714608	4.1219464779168	4.21420471585743	4.20938530835631	3.99049973570838	-0.109860636817283	0.831311373548367	0.960444904168444
Merged-chr4-134764018-4	chr4	134763532	134764532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3972.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	7.43019651356555	7.49431598082372	7.37889637899166	7.51903638277986	7.64747734184085	7.34675038413219	0.117527185279182	0.612614966181672	0.886885261037085
Merged-chr16-11322440-2	chr16	11321940	11322940	+	998.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	-464.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.58043705205192	5.47477931786644	5.81346285577763	5.65535354196245	5.49728126818129	5.50749259077651	-0.121518190895033	0.712752088847791	0.925293327230627
Merged-chr5-86941934-2	chr5	86941434	86942434	+	619.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15431.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	2.38883907583989	2.56979086952603	2.6050566292102	2.38820573324937	2.67337724847573	2.28291237205505	-0.350993639612477	0.690864381041467	1
Merged-chr19-10694867-2	chr19	10694367	10695367	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	RSINE1|SINE|B4	-5901.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	6.94206206766144	7.20450008433708	6.96895791925136	6.99227389941382	7.19830771934847	7.09357276330874	0.0788891398444885	0.751623174404435	0.937914264870717
Merged-chr19-8710658-2	chr19	8710158	8711158	+	642.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	3239.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	2.78064416856855	3.09556299123959	3.16757723871695	3.18315152322584	3.16581287772767	3.12430137508915	0.602645893452126	0.381401502077264	0.763085068523772
Merged-chr13-9150143-4	chr13	9149663	9150663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 9 of 17)	intron (NM_172585, intron 9 of 17)	56282.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	6.99225616845247	6.94430894641537	6.36995705806876	6.48671978805341	6.71741244114358	6.01137200714278	-0.561368981238465	0.0965651009667162	0.4142681490326
Merged-chr9-110858010-2	chr9	110857510	110858510	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	43.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	2.7910279086973	2.617438887005	2.98914304880534	2.68794609215221	2.54123477925758	2.77050372392802	-0.733535154732479	0.337978889519935	0.727916294286144
Merged-chr2-26902227-2	chr2	26901727	26902727	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009298, intron 1 of 4)	intron (NM_009298, intron 1 of 4)	660.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	5.06866110097146	5.47637266065115	5.40080513890205	5.00847334706901	5.30065582817573	5.43469091646249	-0.139114021830809	0.711425298278145	0.924661173262022
Merged-chr1-171615390-2	chr1	171614893	171615893	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-7983.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	3.59335928956786	3.17700577189083	3.27059706925275	3.75469148497273	3.37502843029134	3.46289332420942	0.652491674863759	0.306916628207229	0.703091920100449
Merged-chr12-73201813-4	chr12	73201321	73202321	+	970.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008612, intron 6 of 7)	intron (NM_008612, intron 6 of 7)	78104.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	3.14463925607288	3.21781559594384	3.11937593828107	3.60973121769553	3.4977353404509	3.37538262365545	1.34728346056045	0.0305543803095434	0.211387268730679
Merged-chr13-101767305-4	chr13	101766806	101767806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	CpG	911.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.56308620854361	7.82345256824354	7.64462369783578	7.57478400120651	7.85271195108171	7.75450076561716	0.0736335546122881	0.751583532646406	0.937888126462625
Merged-chr19-8724587-2	chr19	8724087	8725087	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_002896, intron 3 of 9)	intron (NR_002896, intron 3 of 9)	1100.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	4.25839858634987	4.30436437600766	4.37923481039186	4.25145510204767	3.91358797044369	4.13401852482224	-0.587267764833135	0.218240661513713	0.612414823722149
Merged-chr16-36657142-2	chr16	36656642	36657642	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8935.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.54427484442341	5.25825870092931	5.37909144560479	5.36688555780299	5.38767206126475	5.50069988956628	0.0297937106511669	0.930308764881034	0.984485771257693
Merged-chr1-152607687-3	chr1	152607165	152608165	+	637.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	17552.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.68707952401261	5.4671601091442	5.50785052362487	5.70762136012805	5.75415394963404	5.44994008533878	0.17595386139739	0.594037059127998	0.878812974736718
Merged-chr11-50133111-2	chr11	50132611	50133611	+	577.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 1 of 20)	B1_Mus1|SINE|Alu	1751.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	3.37572798319217	3.18886065224789	3.06346959201525	3.13074063821005	3.04743654895084	3.2549504933923	-0.334879550094988	0.608599552586268	0.885006356798728
Merged-chr12-100116993-1	chr12	100116493	100117493	+	543.0	f1_c57bl6.idr	intron (NM_008947, intron 6 of 9)	MER5B|DNA|hAT-Charlie	4662.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	5.97850984652002	6.05472303495155	5.96920452935533	5.94023858433784	6.18817482919051	5.93471086752491	0.0571059813567383	0.84723240708922	0.964186748670995
Merged-chr11-62223584-2	chr11	62223084	62224084	+	640.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001281818)	TTS (NM_001281818)	-25400.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	2.91892595253174	3.03899492164189	2.89292813836879	2.76271900411541	2.6767805815109	2.64667141181864	-1.35511854603207	0.0678330025343997	0.340836260560527
Merged-chr5-86078243-2	chr5	86077743	86078743	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	6497.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.5491869378196	4.50063901744728	4.6472828275489	5.08177164398243	4.73618909379972	4.97489414367578	0.858013736049905	0.035643494180296	0.231922416621369
Merged-chr2-70092885-1	chr2	70092385	70093385	+	605.0	f0_balb.idr	intron (NM_177376, intron 2 of 34)	MLT2B1|LTR|ERVL	53759.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	2.67843800586017	2.84329374112056	2.8960682497063	2.50721014180712	2.8935103993662	2.72665917885295	-0.431684493486207	0.582629099913933	0.873817630599109
Merged-chr6-120452604-4	chr6	120452102	120453102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10595.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	5.35158284367853	5.145927509282	5.44442274886319	5.39733840488178	5.2627699323661	5.26476920326234	-0.00469021293190792	0.989286575137392	0.997591975441369
Merged-chr9-42126882-4	chr9	42126379	42127379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2582.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.80547152223646	2.79130963496748	2.71351863601793	2.90506661405741	2.64999084896854	3.14235196640857	0.673391692585354	0.369342479710252	0.754091599640051
Merged-chr8-39639160-3	chr8	39638633	39639633	+	794.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	3545.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.79574208340615	5.72867082915966	5.79440071181182	6.26974004721405	6.33312884277445	5.80368708883084	0.692114017274024	0.0285575993365109	0.202444202027884
Merged-chr17-70854788-2	chr17	70854288	70855288	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1256.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.68848966017621	4.70352685250949	4.89492786355204	4.47261078054666	4.4769956345983	4.45584190795608	-0.699400638767126	0.0927471931624008	0.405701265916025
Merged-chr15-68060866-4	chr15	68060357	68061357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197999.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.34101771922308	7.28953718502797	6.89268602052682	7.24952987566851	7.40328877990626	6.85779977878413	0.004462522785693	0.987376290988982	0.997218304929226
Merged-chr13-51100852-7	chr13	51100333	51101333	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	-47.0	NM_001283028	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	6.77302052705399	6.66982451133558	6.66529137644006	7.27497648332838	6.44597025188782	6.86367039471285	0.312475338685578	0.316833240090656	0.710777474639496
Merged-chr13-9130047-4	chr13	9129554	9130554	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	36173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.32430756363463	5.53561230478848	5.44639447256477	5.19932279784976	5.30989413316282	5.39145537798463	-0.275256879931262	0.420007440400292	0.78942803480523
Merged-chr12-112594042-2	chr12	112593542	112594542	+	800.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5258.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	6.46034905709798	6.35937876341452	6.27118030382717	6.17726300170258	6.30631676252522	6.24968744682321	-0.203376174114738	0.458605683445991	0.813149567986521
Merged-chr10-67115227-4	chr10	67114721	67115721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12037.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	7.40751207253887	7.08478739698167	6.60915220575198	7.02423444640479	7.12323436859076	6.70444797790087	-0.175794664104938	0.570283550960388	0.869118900111945
Merged-chr16-91416477-3	chr16	91415997	91416997	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 4 of 6)	MLT1A1|LTR|ERVL-MaLR	10262.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	7.79939184562236	7.59460537645503	7.47142828985834	7.44494804536432	7.5319444107591	7.31942043276036	-0.28277200540062	0.232462520410592	0.62876506179153
Merged-chr6-33962746-3	chr6	33962220	33963220	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-66728.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	3.86387583782907	3.50108063027373	3.74313395836921	3.84094469880506	3.86021645016132	4.18700250888311	0.804134216024616	0.14515169173036	0.508242137277471
Merged-chr12-85123790-4	chr12	85123275	85124275	+	933.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030225, exon 10 of 15)	exon (NM_030225, exon 10 of 15)	12942.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	6.87210903134246	6.70840917865326	6.55934552690084	6.24158813009877	6.14485712561768	6.07543489949642	-0.922545611410888	0.000806972856032865	0.0152779516279369
Merged-chr14-31196151-3	chr14	31195645	31196645	+	887.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347583, intron 3 of 13)	B2_Mm2|SINE|B2	10681.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	5.50586490520041	5.48151738024766	5.84826211968161	5.25067602023713	5.1260568316333	5.64820131680594	-0.513170295900989	0.162189050136941	0.535591771804088
Merged-chr19-47537114-4	chr19	47536636	47537636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175360)	promoter-TSS (NM_175360)	-17.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	5.25919777731667	5.45685202021301	5.6956421251534	5.48269214674409	5.41568846620213	5.37080299784079	-0.0897950958350219	0.795119468465479	0.950988942533787
Merged-chr5-140370611-3	chr5	140370109	140371109	+	909.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	18699.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	5.01201310153878	5.05451181289464	5.25340577922864	4.81405366313053	4.97426570729696	5.28638692865601	-0.156660301811392	0.685269970247663	0.916203803074919
Merged-chr9-65546487-4	chr9	65546064	65547064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33523.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.63175855580347	7.92146585372327	7.6144899979433	7.77137884954367	7.79641007155899	7.77026247544449	0.0634837513597451	0.780640975653485	0.946078518476608
Merged-chr4-107253703-4	chr4	107253218	107254218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355459)	promoter-TSS (NM_001355459)	26.0	NM_001355460	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	6.33398956226658	5.94291864933196	6.36874841436692	6.57330273829029	6.23106386598364	6.14532063973448	0.182040041854866	0.559401666666577	0.8649455419793
Merged-chr1-4967195-1	chr1	4966695	4967695	+	704.0	f0_balb.idr	intron (NM_001177795, intron 2 of 5)	intron (NM_001177795, intron 2 of 5)	51539.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	3.07664256103099	3.09744990491431	3.33164580479129	3.45408479503032	3.17402903964211	3.60968069401133	1.00926290466422	0.11924963250699	0.461700534358253
Merged-chr11-20960324-3	chr11	20959815	20960815	+	712.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129207.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.44628106882497	4.77638761687714	4.56575544033756	4.26499517120943	4.13467008900294	4.74503854543827	-0.52470694562183	0.272327357207397	0.669655852547819
Merged-chr17-57291574-2	chr17	57291074	57292074	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	B3A|SINE|B2	12474.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.51791707535393	6.14030892962564	6.43183442109223	6.09378117577431	6.12276505863387	5.7016222513568	-0.625442047807155	0.0471545834859157	0.274957153657749
Merged-chr15-86215122-2	chr15	86214622	86215622	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	663.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.63932184404183	7.6534287126261	7.53700312013765	7.58968843139026	7.7123150275304	7.14511051809842	-0.140386338398627	0.583176086363941	0.873960625221455
Merged-chr2-181929071-2	chr2	181928571	181929571	+	789.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62155.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	3.18990274090089	3.48689559594888	3.48435025887177	3.48559758325517	3.77804293303769	3.50052272609969	0.763940722303476	0.209243912771935	0.600619825235516
Merged-chr6-124671119-4	chr6	124670620	124671620	+	983.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	8016.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	5.71248076519563	5.5225550156886	5.20995966795014	5.04582860219632	5.19367082756595	4.57253933810017	-1.05746289816733	0.0124350417816774	0.117179496780273
Merged-chr2-158144478-4	chr2	158143980	158144980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1912.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	8.33295569750163	8.16713052942496	8.07848876968355	8.36906749736587	8.38186733244284	7.95994374256424	0.0814958515140438	0.728679051884649	0.930478966998914
Merged-chr8-24541004-4	chr8	24540475	24541475	+	899.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	35358.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	2.2848922740999	2.39966288445991	2.24908948507205	2.46117384735934	2.63603235075004	2.71387867808384	1.84194154217276	0.0347280795294611	1
Merged-chr7-121034977-1	chr7	121034477	121035477	+	1000.0	f0_balb.idr	intron (NM_021554, intron 1 of 4)	CpG	532.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	7.1777719366845	7.0559318944858	7.19454260693355	7.26240606734509	6.81934191927458	6.89715707123149	-0.202945707458176	0.438190396706202	0.800419903410376
Merged-chr13-98693620-4	chr13	98693117	98694117	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1214.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	7.59932312922601	7.71218911526771	7.2637664613929	7.69963632823289	7.95034769310463	6.97549362230294	0.105357218470362	0.740462047569703	0.934528157499283
Merged-chr7-125622744-1	chr7	125622244	125623244	+	932.0	f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	19315.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.66091357623111	6.57795407353969	6.7125299816911	5.58585499004152	5.61017045311464	5.32662825295726	-1.92716411167683	3.86729482517468e-10	4.53864411584111e-08
Merged-chr11-94629721-4	chr11	94629234	94630234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133807)	promoter-TSS (NM_133807)	-90.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	7.74581736513601	7.7270940696131	7.54640977444107	7.76652827008126	7.71233120697922	7.12309558069823	-0.149581828299185	0.577963776650526	0.872260491303678
Merged-chr16-90996737-2	chr16	90996237	90997237	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	PB1D9|SINE|Alu	14358.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	3.1905947648434	3.28113340152889	3.34186332569855	3.38886223128255	3.05186975809185	3.56961433487581	0.301894142712275	0.641686897899934	0.899162551833139
Merged-chr8-117358551-2	chr8	117358051	117359051	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	9381.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	2.63216249722269	2.73294245856331	2.93706913198499	2.87929728313067	2.55655214320753	3.06554001668716	0.381495528847879	0.622398521640273	0.891138883053322
Merged-chr10-13851841-3	chr10	13851337	13852337	+	606.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	L2|LINE|L2	17120.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	2.40455226516296	2.26652111001536	2.4798217749258	2.20595286404577	2.22772873018921	2.42886784037517	-0.642253538835282	0.451985239589337	1
Merged-chr14-62342992-5	chr14	62342579	62343579	+	919.82666	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026001, intron 1 of 10)	intron (NM_026001, intron 1 of 10)	11011.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	6.2100781202369	6.47589120092868	6.11458910746514	6.12182446374929	6.11022729369076	5.77744555984859	-0.439905671801035	0.152209907842015	0.520212027097609
Merged-chr1-37318140-3	chr1	37317643	37318643	+	953.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	18305.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	3.80424753852252	3.64330670424472	3.65841622391918	3.74308835436663	3.51894894746254	3.50815059816759	-0.383993089286989	0.492408600520516	0.83104217378051
Merged-chr5-137834963-2	chr5	137834463	137835463	+	627.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 2 of 6)	intron (NM_153510, intron 2 of 6)	1315.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	4.60452269590503	5.28366754136144	5.39746662755455	5.57235342091883	5.21214984359911	5.56957688741912	0.636773495694429	0.134405280052203	0.490121594468564
Merged-chr1-13383705-4	chr1	13383215	13384215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-9632.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	3.9290715032258	3.68798724972027	3.39649159003781	4.29226125582299	4.07560322174241	3.78179486805933	1.14821993738465	0.060236580376493	0.317741973578996
Merged-chr9-69441185-4	chr9	69440719	69441719	+	675.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12464.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	3.6716004805653	3.55636331828794	3.69146877899699	3.62109141205631	3.64585509194245	3.5480164243926	-0.102694897984282	0.852149307373246	0.96531854415899
Merged-chr11-116446156-4	chr11	116445674	116446674	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033267, intron 7 of 13)	intron (NM_001033267, intron 7 of 13)	8173.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	3.47048359368305	3.09028527189662	3.2020216185075	3.99490081750484	3.65983944838577	3.74275339783215	1.98301035886082	0.00221907918832052	0.0334320371359359
Merged-chr3-67554044-3	chr3	67553554	67554554	+	967.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28714.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.68221124506248	3.58935653014362	3.54875218043264	4.14818321769115	4.81524935753281	4.17870408256972	2.4736111046786	1.68689505052056e-05	0.000629996244899975
Merged-chr11-69423468-2	chr11	69422968	69423968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 79 of 85)	intron (NM_001081330, intron 79 of 85)	-9793.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.25257102458201	5.85329756068366	5.5762839330813	5.90128184390245	5.97782073529704	5.54741880456967	-0.182648062854198	0.608675501742039	0.885006356798728
Merged-chr7-30373715-4	chr7	30373220	30374220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10948.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	3.60907533011729	3.85684237861149	3.60389708164378	3.38427789799123	3.36453792356153	4.05401804809661	-0.200765465627821	0.751524604524422	0.937886504040509
Merged-chr9-118732628-2	chr9	118732128	118733128	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	20936.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.37195086624741	3.53571756931672	3.53840978692627	3.68294391703948	3.40991050411471	3.81082931838202	0.548542999928198	0.349119643080065	0.737168174466914
Merged-chr15-36173981-4	chr15	36173486	36174486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-24.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	6.35496704603167	6.60868418553245	6.64889970878074	6.64260070823864	6.87267282909206	6.81520046773002	0.383751016276655	0.151323072061703	0.518614043990544
Merged-chr16-91538687-4	chr16	91538186	91539186	+	945.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8408.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	5.87878355059117	5.65934386439085	6.02093275516478	6.73082669285883	6.87969425228181	6.56034551314259	1.47175444835252	3.66918172264784e-07	2.24819788496378e-05
Merged-chr3-116126688-4	chr3	116126104	116127104	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011693, intron 2 of 8)	MIR3|SINE|MIR	3084.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.58892375495013	6.4668413466971	6.67987163374781	6.8357379417258	7.1647646872301	6.4351603974743	0.444292254826655	0.139616895041076	0.499301268000938
Merged-chr3-69702112-2	chr3	69701612	69702612	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19943.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.65505599183934	3.53736308013843	3.6437659590586	3.59960968007698	3.12776310260917	3.38651747466938	-0.851443810462992	0.170458564608999	0.547837630126904
Merged-chr10-84574972-2	chr10	84574472	84575472	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1975.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	3.39972518077948	3.42518677804762	3.49949819364178	3.6452530164685	3.39951553341476	3.6745126432994	0.485944935788138	0.401951059212115	0.777823507457637
Merged-chr10-79858629-2	chr10	79858129	79859129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-3658.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	3.84372670557699	3.96359673175124	4.39134988465345	3.95397871940035	4.01906080506703	3.82681995855548	-0.403529349799177	0.44883620721898	0.807454029128485
Merged-chr10-67200984-2	chr10	67200484	67201484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	15234.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	6.06102546750765	5.98009272752261	6.22137236650048	6.25417128208165	6.0866441059354	6.26150659616862	0.194010768067578	0.500131007724833	0.834921806675451
Merged-chr11-45853112-4	chr11	45852619	45853619	+	974.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	1155.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	6.6185807699314	7.1878056337573	6.9629261179371	6.99896948144421	7.26603162034123	7.04797772982257	0.254246262790184	0.363837381611694	0.74933829766087
Merged-chr17-5935856-3	chr17	5935346	5936346	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-5434.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	7.0464141901247	7.07886792327627	7.1450548517529	7.27739274180376	7.36845108671518	7.2505876227351	0.323310872840042	0.162568211288408	0.536019009545327
Merged-chr4-40236805-4	chr4	40236316	40237316	+	842.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	3009.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	2.87298870033217	2.97950144673084	3.12888347928766	2.87506509414583	2.74827119835855	3.19977898692893	-0.21724069307861	0.76252865279823	0.941579307874579
Merged-chr3-53863907-5	chr3	53863402	53864402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026435)	promoter-TSS (NM_026435)	-95.0	NM_026435	67890.0	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|Gm10726	ubiquitin-fold modifier 1	protein-coding	7.46405009358864	7.4664155491872	7.03217007589821	7.52787887879516	7.43943783437564	6.74336718562977	-0.0745522448505345	0.808874777472323	0.954721853010197
Merged-chr6-134115155-4	chr6	134114659	134115659	+	979.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	79459.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.10236796271535	6.13740665869217	6.09907225563122	6.54820070378379	6.59740184039639	6.63302512037408	0.78496157282128	0.00330713180224855	0.0452523964810882
Merged-chr8-13494461-4	chr8	13493985	13494985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019521)	promoter-TSS (NM_019521)	50.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	4.04703398355679	4.29612935774108	4.41279846562042	3.60822462080441	3.5949487907058	3.85939532614132	-1.79559898334059	0.000854237200049984	0.0159406523753665
Merged-chr19-14677182-4	chr19	14676673	14677673	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-78990.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	2.61515181159488	2.7891861787674	2.74935648915668	2.68058972480357	2.67816047774066	2.82209943419458	0.0286217191758094	0.968981793543753	1
Merged-chr15-31452995-4	chr15	31452375	31453375	+	807.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	814.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	6.2661112821441	6.60669823457228	6.18787128646384	6.44419662907127	6.5406494719069	5.7651847234075	-0.10661498881456	0.757635947001089	0.939883186830738
Merged-chr15-38078941-4	chr15	38078453	38079453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081359)	promoter-TSS (NM_001081359)	-99.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	6.82938846891979	6.75426341193143	6.6533793094688	6.92635184351515	6.34474742208745	6.50293833753884	-0.213274962317282	0.464658897021589	0.816459397744841
Merged-chr17-15719831-2	chr17	15719301	15720301	+	691.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	intron (NM_007690, intron 2 of 35)	14834.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	3.0917802825551	3.29740398352881	3.3577100773363	3.19059295374715	3.22338328482178	3.3742735795769	0.0441234180638327	0.94403634031859	0.987523976011917
Merged-chr11-3891136-2	chr11	3890636	3891636	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026150, intron 1 of 2)	RLTR28|LTR|ERVL	3990.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	1.81348340025587	1.8850586761037	2.0103894988217	1.63395204183461	1.75488277954754	1.74912351093779	-1.78816318057237	0.100472787679923	1
Merged-chr11-32205310-4	chr11	32204774	32205774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030093)	promoter-TSS (NM_030093)	-141.0	NM_030093	78372.0	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	3.72833270927133	3.93256942955086	3.93319161304778	3.98890876408001	3.93500277905794	4.185513285223	0.509394562073099	0.317248713280279	0.711181392710422
Merged-chr7-90021247-4	chr7	90020752	90021752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7907.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.94055286275444	6.84707664956219	6.8329831622312	6.77832656634092	6.91988842934537	7.04257327847584	0.0586735906320229	0.813835915072576	0.955951026586845
Merged-chr8-123042424-4	chr8	123041925	123042925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037865)	promoter-TSS (NR_037865)	-141.0	NM_001081379	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	8.24683648697465	8.39199878607849	7.88597242651183	8.09251609873859	8.34255078599695	7.99022531923213	-0.0608878182367968	0.805664258551778	0.953956034266138
Merged-chr5-43909575-1	chr5	43909075	43910075	+	730.0	f1_balb.idr	intron (NM_007646, intron 7 of 7)	intron (NM_007646, intron 7 of 7)	40766.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	3.04441009595716	3.07369979592972	3.0579371002973	2.91855326423146	2.79160188141438	3.24126692235477	-0.317387376474728	0.650318862471378	0.902576889668442
Merged-chr9-31211191-3	chr9	31210691	31211691	+	977.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 1 of 17)	CpG	657.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	5.23284494347655	5.09503169777618	5.34018645718073	5.06572207901857	4.57004825879544	5.09332696217159	-0.641872481867393	0.111411801916387	0.445871935353881
Merged-chr11-84830165-2	chr11	84829665	84830665	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046281, intron 2 of 2)	B2_Mm2|SINE|B2	987.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	4.98688011465231	4.89891416523346	5.29321252094657	4.95208507352636	4.80248580528389	4.97418964354372	-0.331671871120238	0.393241242390671	0.771515439837752
Merged-chr1-35890687-4	chr1	35890186	35891186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177714.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.40521374106268	3.99176397463868	4.09641944747223	4.09641204875206	4.23232700791974	3.85314192102232	-0.283052291653976	0.584508915370721	0.874568023559098
Merged-chr9-41434796-3	chr9	41434288	41435288	+	717.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-40105.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	3.5926636974383	3.57821620454776	3.83675147632022	3.76180883614719	3.29788454125326	3.65765992384179	-0.299183167852965	0.614929173772374	0.887653777410122
Merged-chr6-120478648-4	chr6	120478029	120479029	+	901.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 11 of 12)	MIR|SINE|MIR	15278.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	6.16389776296081	6.12904247543936	6.58349714175903	6.26570025518307	6.29736981466746	6.14455925405474	-0.090300426426811	0.762489579834981	0.941561416958418
Merged-chr9-20521450-4	chr9	20520954	20521954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082485)	promoter-TSS (NM_001082485)	-35.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	6.51355825143278	6.74552291710109	6.44724131440833	6.63602166532537	6.60789183324791	6.56096123748515	0.0327386942514338	0.902067781226004	0.977397387787646
Merged-chr5-105516534-2	chr5	105516036	105517036	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2935.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.43645307794359	3.63148961386821	3.52774726821419	3.31425965066599	3.50550079104484	3.43419674328776	-0.417692008231361	0.477485971250783	0.823237639056184
Merged-chr13-18782332-3	chr13	18781829	18782829	+	945.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	65037.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	6.19932473445868	6.09942722416246	6.034014870808	5.8423422146904	5.94685943652967	5.9067000619045	-0.373564705481634	0.198903428123389	0.587343866831168
Merged-chr6-57769257-4	chr6	57768747	57769747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	55878.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.98637906725547	6.84868122142885	6.73510379343099	6.69807155215896	7.20225434078077	6.55198972788372	6.00917051494717e-05	0.999838615178898	0.999986127056153
Merged-chr4-129794127-3	chr4	129793569	129794569	+	980.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26410.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.07742687696116	3.84071158625035	4.03166469699169	3.93296430380989	4.04885324304035	4.19093686645733	0.214267220662867	0.667251151423862	0.908654934497672
Merged-chr15-97784302-4	chr15	97783795	97784795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026353)	promoter-TSS (NM_026353)	-70.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	7.33861583775307	7.29940482590827	7.22697269218701	7.16200183775597	7.09187279138458	7.03113164835282	-0.290304060039331	0.211682944841321	0.604070547741367
Merged-chr16-38775580-4	chr16	38775066	38776066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178924, intron 7 of 7)	intron (NM_178924, intron 7 of 7)	24637.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	4.68731853460157	4.59079015456805	4.60644351507259	4.60646780820837	4.61744628076636	4.21524162137184	-0.302486576557959	0.492955204162931	0.831208279358962
Merged-chr13-45031038-4	chr13	45030557	45031557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28961.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.7161452969817	6.64118028805531	6.2018760242367	6.30626668960223	6.52888941300637	5.61479058251843	-0.527363240538783	0.151602700869933	0.519079091424247
Merged-chr5-115508920-4	chr5	115508411	115509411	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	2235.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.67048199488461	6.80003106999451	7.09822128285703	6.8747890039703	6.83332029811089	7.30175999580356	0.232820470108297	0.412931654109715	0.784725209448945
Merged-chr5-105155778-3	chr5	105155273	105156273	+	903.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-16187.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	3.51524785817394	3.66910309595116	3.50561307446949	3.70099806322688	3.50019936669528	3.6312104857965	0.144114841894573	0.79830067131701	0.951930937621884
Merged-chr12-85459117-2	chr12	85458617	85459617	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-14773.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.25451039612074	3.14333220365131	3.3021573662115	3.22071467374008	3.0539913615501	3.14534694824069	-0.396157774376222	0.533525945267315	0.852484319020423
Merged-chr19-43711287-4	chr19	43710819	43711819	+	958.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	21630.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	6.28363833964523	6.48195619462501	6.5138342121791	6.85795962239971	7.13459181084903	6.69317193803344	0.776310402694453	0.00494368623944756	0.0607863433836209
Merged-chr14-47541471-1	chr14	47540971	47541971	+	664.0	f0_balb.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26963.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	4.80998503199658	4.83232595055781	4.65710250450965	5.20563890798869	5.34637312191754	5.00564832003386	0.919200738307598	0.0167953541313965	0.143776525366794
Merged-chr5-136953889-4	chr5	136953394	136954394	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	619.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	6.45454289602842	6.50748215611983	6.8278993435691	6.68229309849736	6.82325787997045	6.64148004019102	0.200421325940041	0.459675914596792	0.813819730244683
Merged-chr16-92676689-4	chr16	92676219	92677219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	20610.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.26651247088097	6.84319529296226	7.04915231242688	6.63574066279494	6.95205544622042	6.82926356982923	-0.382482950491257	0.158444847435334	0.530220171976885
Merged-chr12-40681315-4	chr12	40680801	40681801	+	956.241699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 12 of 52)	intron (NM_172803, intron 12 of 52)	235248.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.18321872040887	3.97015354500421	4.38300801882657	4.24716442403068	4.04161177738026	4.0969981629307	-0.141565507223614	0.772657502967429	0.943848608021176
Merged-chr11-103982438-4	chr11	103981915	103982915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15544.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.50019146040215	6.43363898334599	6.63603731668044	6.309072688601	6.47365471831197	6.45837269810479	-0.167931313406932	0.53112865622859	0.851437333400144
Merged-chr13-21792186-4	chr13	21791689	21792689	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	4701.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	3.82186026510875	3.78309904908159	3.86903782864215	4.08832225552127	4.12004349078231	4.34058312253019	1.09445206730622	0.0283406349210494	0.201502136757209
Merged-chr12-102385196-6	chr12	102384706	102385706	+	904.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	54607.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.36312389394291	3.64351585310775	4.23012781009302	3.71671277042091	3.73634308432799	3.86610794274565	-0.0615387993388642	0.921251105263033	0.982526400261012
Merged-chr16-93833049-4	chr16	93832542	93833542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045529, intron 1 of 16)	PB1D11|SINE|Alu	921.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	7.60418878244156	7.92544015911598	7.82243714570417	8.08428943355129	8.31027844914554	7.84533551231231	0.441369632343258	0.0710371195727395	0.349641876680191
Merged-chr5-138162106-2	chr5	138161606	138162606	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012002, intron 3 of 9)	intron (NM_012002, intron 3 of 9)	1004.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	2.56942630300594	2.65369667561942	2.3927268238315	2.68778975222477	2.57225714366276	2.85245964348266	0.878771049443857	0.279261182850136	1
Merged-chr2-167702315-3	chr2	167701811	167702811	+	636.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11134.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.21679990214308	6.02548856003049	6.77505145703009	6.11386946965207	6.12101662361306	6.05317620091697	-0.451231749830875	0.173061922020811	0.551792788730798
Merged-chr11-60837489-2	chr11	60836989	60837989	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	6858.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	6.21130816031455	6.31762600131868	6.24640611182887	6.60063704591941	6.84321512043054	6.40754833864981	0.617983571590942	0.0280354583725443	0.200152245410782
Merged-chr15-98481652-4	chr15	98481146	98482146	+	864.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010679, intron 2 of 3)	intron (NM_010679, intron 2 of 3)	1037.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	5.43808725844379	5.36070986376461	5.51245911094034	5.34224038025422	5.25545262463927	5.72923320118389	0.0193235458919707	0.956321707969832	0.989864129303063
Merged-chr9-32696938-3	chr9	32696436	32697436	+	917.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	894.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.74664871269278	4.79608450298915	4.54508302413086	4.37711366305125	4.07725118774612	4.20098026662437	-1.24786174010382	0.00555174733822195	0.0659457234145285
Merged-chr2-6643459-2	chr2	6642959	6643959	+	581.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	78203.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.96786941705213	3.15240285645002	3.45066039995454	3.34070928329088	3.16373531386502	3.36323251655369	0.371071479181119	0.574576205270174	0.870777333017021
Merged-chr6-88084723-7	chr6	88084216	88085216	+	941.460327	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133933, exon 1 of 10)	exon (NM_133933, exon 1 of 10)	243.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	7.2014042585591	7.45316650794047	7.08630961899972	6.82379050040131	7.02917963711187	6.3867371568235	-0.716503493266615	0.0145726387989067	0.129991437519235
Merged-chr1-85766233-3	chr1	85765734	85766734	+	714.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9037.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	3.90398603345068	4.12030912353393	3.94122718260174	3.65867268655517	3.93447990668017	3.80811004861858	-0.576339614946456	0.274487249104978	0.671810361172288
Merged-chr19-55839327-3	chr19	55838844	55839844	+	700.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-55977.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.04966979260352	4.86849205659393	5.25395179620794	4.96895045306794	4.92484048139231	5.02875027409826	-0.182761611628749	0.631086646166908	0.895015555457654
Merged-chr11-46837534-2	chr11	46837034	46838034	+	804.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 6 of 8)	intron (NM_178759, intron 6 of 8)	26735.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.62791947069999	4.86121335781264	5.06999827279704	4.95015698849803	4.83001368368971	4.77952131279566	0.00264506724010646	0.994765709997634	0.998961028701257
Merged-chr11-95827196-4	chr11	95826706	95827706	+	811.762512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	2706.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	5.76990151799843	5.63768962530361	5.77839770274823	5.74431273596928	5.88391362452495	5.44338318695589	-0.0165616676068863	0.959730586524408	0.990242512723989
Merged-chr13-59821090-4	chr13	59820609	59821609	+	892.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	2038.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.88471461815209	5.98121093174545	5.85861635580341	5.85506966622532	6.48231988272175	6.15176846850287	0.493108700992712	0.128624662057987	0.479743640706484
Merged-chr8-22889621-4	chr8	22889126	22890126	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	30087.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	4.30309917840924	4.56142693370472	4.52588352791071	4.74618448081581	4.94905909617704	4.63464727176466	0.793018199999777	0.0630752509594918	0.326858409530883
Merged-chr13-93189859-2	chr13	93189359	93190359	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	2558.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.49493836864201	5.93063053304506	5.65454579713402	6.09949647511982	6.40374400871757	6.13570528288873	0.894876872424007	0.00557522640811687	0.0661868225091437
Merged-chr16-13866861-4	chr16	13866360	13867360	+	949.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36285.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	5.54159839054153	5.70316278807361	5.79346273432303	5.78120229899147	5.91133563998515	6.01703106010978	0.406623828475836	0.19141168669523	0.57804898292515
Merged-chr8-111659854-2	chr8	111659354	111660354	+	625.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	16411.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	4.60085268353042	4.31264645357734	4.49075567996837	4.26345905928713	4.19001369522509	4.38936402202941	-0.513460612942618	0.255100461825168	0.652096686048004
Merged-chr1-180794356-4	chr1	180793894	180794894	+	815.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19211.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	3.69265353588318	3.36029451347213	3.28108681731209	3.29395651757128	3.44858477884144	3.63062410219965	-0.00587494011517272	0.992484885387353	0.998523796268552
Merged-chr5-92332624-4	chr5	92332150	92333150	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 1 of 10)	intron (NM_001310664, intron 1 of 10)	823.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	6.21728792698072	6.16329369454311	6.37874526420053	6.25499646133868	6.50743316813962	6.47421644453436	0.279262226531966	0.317166440883303	0.711111910245146
Merged-chr1-36939823-4	chr1	36939306	36940306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018872)	promoter-TSS (NM_018872)	-279.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	8.67226709060256	8.68327981371499	8.27876835671271	8.65515410862421	8.71749833075316	8.37812167618049	0.0448775062638125	0.848125319460015	0.964318271116593
Merged-chr15-27724409-11	chr15	27723916	27724916	+	923.242432	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42874.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.17514804374041	6.47030801938809	6.43618965606249	6.12164486973542	6.57855822199163	6.26577237000035	-0.0302337577087909	0.920052501311009	0.982226665414691
Merged-chr11-107011846-4	chr11	107011345	107012345	+	860.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12320.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	7.7996457826266	7.73701719702216	7.7271100621359	7.44343125353035	7.8897598043683	7.51986136270777	-0.163905629235246	0.501073897138816	0.835421019759285
Merged-chr2-148568089-4	chr2	148567585	148568585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-104530.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.94462871399249	4.95401702323378	5.22239488780657	5.04183376244189	4.99817939686545	5.22396439396587	0.100543994822364	0.788195016752153	0.948904207939777
Merged-chr8-108703895-2	chr8	108703395	108704395	+	980.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCG)n|Simple_repeat|Simple_repeat	-10749.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.16586579724064	4.95328382510873	5.34987408124571	5.39061769065683	5.10521639621579	5.16235680892761	0.139443334295498	0.708272978359098	0.923674318414978
Merged-chr5-139781629-3	chr5	139781096	139782096	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5918.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	6.74090382847071	6.7867158939378	5.93143790581018	4.42978622103708	4.19329662212587	4.67042148612054	-4.59460988356483	9.54872190181852e-23	1.11905641127678e-19
Merged-chr3-109255185-4	chr3	109254675	109255675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85508.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	7.17741357934575	6.90768681999265	6.79747124632963	7.00973427934791	7.1756768288529	6.91592504728975	0.102463600963332	0.694971689695008	0.919230570201314
Merged-chr10-118869845-4	chr10	118869318	118870318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-915.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.33914698515463	8.03784136934732	7.67404028313643	7.91108593100104	7.96808779401025	7.50664571503136	-0.334023182306528	0.225790156665533	0.620701256044383
Merged-chr10-128338644-4	chr10	128338141	128339141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	914.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	5.80190418644646	5.76133493184293	5.50631502602184	5.90873448687138	5.9708895063162	6.0589105347123	0.481331563419982	0.120662715702071	0.464604500145206
Merged-chr2-24962414-4	chr2	24961925	24962925	+	997.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355558)	promoter-TSS (NM_001355558)	3.0	NM_026044	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	3.98462480597137	4.1147521469987	4.12204410161952	3.8592645596499	4.08066014492575	3.95089348429969	-0.298159417149774	0.547987049054078	0.859456555901125
Merged-chr12-91740754-2	chr12	91740254	91741254	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 2 of 6)	intron (NM_175367, intron 2 of 6)	45682.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	2.8322690944752	2.93145375994269	3.15371540465955	3.08730102433679	2.90362376922043	3.484405040628	0.875882375890341	0.222175976689811	0.617071180265092
Merged-chr11-22859740-4	chr11	22859236	22860236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016888)	promoter-TSS (NM_016888)	-1.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	8.05634490923088	8.03134823970423	8.08504660295265	7.87200978469127	8.01863452489505	7.74140770138071	-0.238542419979961	0.272157257915697	0.66953956602346
Merged-chr15-98994099-4	chr15	98993606	98994606	+	946.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8141.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	6.78965190461383	6.71748686149641	6.89442374530373	7.0177111909536	7.33530981640182	6.67019637656917	0.385929530339243	0.175384399562491	0.555240464132549
Merged-chr2-90582486-1	chr2	90581986	90582986	+	595.0	f0_c57.idr	Intergenic	Intergenic	-1839.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.3285103765448	3.06435275156978	3.51502523218461	3.32595952221862	3.40125823783841	3.31610291410752	0.162970677565774	0.797481586064938	0.951799370596145
Merged-chr4-150009098-4	chr4	150008593	150009593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-70.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	7.96672547010332	7.89168864500752	7.85366795342907	7.86158587317704	7.81649277423621	7.72271603763856	-0.147060090131296	0.490584752040657	0.830091427684216
Merged-chr3-98030728-2	chr3	98030228	98031228	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17190.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.26202680402373	4.94677131736125	5.18318739322446	4.96277751961794	4.92877359541476	5.01202828305581	-0.361426327490387	0.33432758382336	0.724883973366998
Merged-chr1-173935056-3	chr1	173934555	173935555	+	693.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302651, exon 5 of 8)	exon (NM_001302651, exon 5 of 8)	7437.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	5.00136446937647	4.85287703564936	5.04347913986894	4.49089818916957	4.59755595831963	4.54447753540829	-0.965298493771139	0.0167542559649517	0.143572413010474
Merged-chr9-21515526-4	chr9	21515017	21516017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5283.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	6.04185756197555	5.8962166440235	6.33832842911584	5.98110226685146	6.23602760990585	5.93785908670163	-0.0448005921469672	0.886230233557617	0.97374292322368
Merged-chr1-161500527-4	chr1	161500021	161501021	+	989.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	5864.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	7.00688192458961	6.78506029518035	6.73167389276841	6.93981264588981	6.92361445348467	6.82147605272184	0.0724037044034245	0.774856873559946	0.944517829695789
Merged-chr7-111429701-2	chr7	111429201	111430201	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-307026.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	2.79491723762153	2.55628548293162	2.82411728929081	2.59486866966268	2.76620670046011	2.89635458669509	0.145661013365575	0.847764029053465	0.964318271116593
Merged-chr12-98293874-2	chr12	98293374	98294374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25239.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.34858157689432	3.51319328891874	3.51753766769236	3.49112150955707	3.11908253966353	3.36970064473472	-0.499232505335133	0.421279361074727	0.790226764066497
Merged-chr3-135608353-4	chr3	135607854	135608854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	83193.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.77888645468471	6.69953376270835	6.82605276653429	6.92355468948315	6.86751969754794	6.69821269077461	0.113403863076647	0.651930100986845	0.902896807825606
Merged-chr18-46334292-4	chr18	46333784	46334784	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22356.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	3.88285933033841	3.95351097254714	4.28925895751046	4.00041450662797	4.03005538118726	3.9495903608981	-0.138814471830174	0.784281868573972	0.947513080979134
Merged-chr2-112268055-4	chr2	112267521	112268521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133649, intron 1 of 24)	intron (NM_133649, intron 1 of 24)	1707.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	6.54787166811201	6.75018781347257	6.57413113614186	6.8611965208745	7.16298546499097	6.70186088847185	0.473917283477777	0.0839818379155448	0.383616643021336
Merged-chr10-81139486-2	chr10	81138986	81139986	+	910.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	3215.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	4.39979540224722	4.75994847715482	5.2304571175212	4.91334755176681	4.79815519864908	5.11377726228251	0.245504694965428	0.589072338343414	0.876749027454634
Merged-chr19-12574319-4	chr19	12573791	12574791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026640, intron 1 of 3)	intron (NM_026640, intron 1 of 3)	766.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	7.38636270889196	7.72109548758357	7.81895494342659	7.68971219798176	7.94815260920498	7.8911574778961	0.284436390714455	0.243684081311665	0.64086208327192
Merged-chr12-38778319-4	chr12	38777852	38778852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1730.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.56068998643562	5.2813329193032	5.23845592851636	5.21944340936657	5.25647347138128	5.36584816436389	-0.19223800776633	0.584502078750985	0.874568023559098
Merged-chr17-34557143-4	chr17	34556616	34557616	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7179.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	5.81009154062083	5.8486848191342	5.36817026689913	5.4912959319292	5.27246484394038	5.22925193638669	-0.697725837208128	0.0483765932872883	0.278960856492007
Merged-chr9-87171254-4	chr9	87170756	87171756	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	22028.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	6.14909224754388	6.19473745807254	5.90787429995344	5.27567457800056	5.61549827339024	5.54255513076055	-1.09196493985058	0.000795179033200481	0.0150958834119429
Merged-chr10-7232983-4	chr10	7232489	7233489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20752.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.42183036740572	4.06437630905483	4.36723735838049	4.1565543146002	4.30611158014707	4.55459234743695	0.136710358409942	0.77450775976204	0.944477929413368
Merged-chr12-76377954-4	chr12	76377456	76378456	+	965.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7690.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	5.03005960297439	5.31764186855633	5.20284671474013	5.79497346599038	5.99773975160338	5.7446696094845	1.26447616451446	0.000185581793530005	0.00470789325489168
Merged-chr11-23007767-4	chr11	23007251	23008251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5636.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	4.4401819830626	4.62305137617698	5.04635388283732	4.75239523078183	4.66695005219912	5.31242743243058	0.480593254524754	0.301192941051321	0.697863295363654
Merged-chr2-165288663-3	chr2	165288181	165289181	+	759.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	-843.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	4.48305437236478	4.29613997776232	4.41430535616263	4.46101625038099	4.31914577493636	4.71759013966157	0.250839642399516	0.57555149838411	0.871227220388674
Merged-chr9-45829330-4	chr9	45828844	45829844	+	837.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-706.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	3.7223502047345	3.4243615128254	4.02464434347786	3.96284726923239	3.75221827204883	4.00196809077605	0.533870564538914	0.351675360791127	0.739403630741215
Merged-chr12-17676642-4	chr12	17676145	17677145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14164.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.27872882115747	4.5190835499595	4.47222157127969	4.14476618680144	4.29452702543275	4.37073070940569	-0.408692092184327	0.367529169806684	0.752471538099639
Merged-chr10-127288508-3	chr10	127287995	127288995	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	523.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	6.7557091980969	6.7634013644143	6.76909750830283	6.95027241359095	6.63385275645121	6.95623643570684	0.132587340789989	0.61002501910712	0.885428451824695
Merged-chr11-61654884-2	chr11	61654384	61655384	+	644.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	1563.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	2.61888517425124	2.54722331748522	2.87909827469284	2.94597583230918	2.57001596828089	2.83315273017014	0.553583562943864	0.475856516832169	0.822190893570563
Merged-chr8-105326350-4	chr8	105325861	105326861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177449)	promoter-TSS (NM_177449)	-3.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	5.8193634614594	6.06098878587173	6.36650276341798	6.48515819795199	6.34356790637202	6.23304306839875	0.454144835713989	0.138752735977683	0.497691577630065
Merged-chr19-47936582-4	chr19	47936099	47937099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3G|LINE|L1	-1113.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	6.50880025091853	7.21392848617143	6.60929905684567	6.85778051795237	7.17693225747572	6.76936710746405	0.194442619252414	0.5400208405934	0.856245552500013
Merged-chr14-9390340-4	chr14	9389846	9390846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-493749.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.59287345217406	5.20606315541484	5.35013459387336	5.42694097591472	5.08406739285614	5.11562854474006	-0.351951047290899	0.34150089176987	0.730861271883589
Merged-chr7-119921220-4	chr7	119920710	119921710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21099.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	5.34374570769053	5.36744425443913	4.92038080064972	5.55879214155369	5.73350534005844	5.18271872159809	0.554257790528578	0.151511792869305	0.518952882025607
Merged-chr2-160645843-4	chr2	160645336	160646336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009408)	promoter-TSS (NM_009408)	-61.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	7.70358452557649	7.87474006647826	7.42031936525908	7.46238445897891	7.73165928783094	7.52925879260795	-0.150898047288537	0.543563057154412	0.857551302506722
Merged-chr1-172563211-4	chr1	172562771	172563771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027644, exon 6 of 6)	non-coding (NR_027644, exon 6 of 6)	3365.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	3.44082697621065	3.55397993158971	3.59944822538761	4.15832601283448	4.3401737663167	4.18376602446461	2.29751243364088	2.43632324063304e-05	0.000863747695809944
Merged-chr8-83733046-2	chr8	83732546	83733546	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 4 of 19)	RLTR40|LTR|ERVK	8265.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	3.63326648521367	3.8241601892287	4.19680681595286	3.59056551743618	3.4679373837907	4.18224135005116	-0.373700843933031	0.546114683056126	0.85849711034619
Merged-chr8-26689353-4	chr8	26688853	26689853	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135070.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.78908698462213	5.96430361030083	5.7735283469723	6.4100524696028	6.4486706717814	6.10808988913511	0.834295008263044	0.00517751420319038	0.0626263137901608
Merged-chr17-31295282-4	chr17	31294797	31295797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-186.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	6.08116772224338	6.03602184559486	5.993144853744	6.22299698692527	6.3831257816975	6.60913721797199	0.616289800512998	0.0327578955355809	0.220402601417047
Merged-chr7-46788552-4	chr7	46788064	46789064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 4 of 22)	intron (NM_001005247, intron 4 of 22)	7317.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	4.94734833675564	4.89237536210939	5.13728205618777	5.03659563808611	4.9990335467076	4.81042627522994	-0.0634476584385741	0.867804020507362	0.969442397421746
Merged-chr4-95195937-2	chr4	95195437	95196437	+	706.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143715.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.45773894701872	3.59151446241525	3.49833915997009	3.64296130508841	3.32912565668805	3.5145313730209	-0.074911466674697	0.898104051932886	0.976261391798139
Merged-chr10-76350032-3	chr10	76349527	76350527	+	656.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	-4736.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	2.19438214334735	1.99181638902375	2.22585470982701	1.84454312667972	1.9893389360998	2.03848676091246	-1.44560689600652	0.146665113322204	1
Merged-chr4-40240400-2	chr4	40239900	40240900	+	557.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-575.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	5.97978702903469	5.50598989053419	5.83586952260475	6.10890879862913	5.94072893406849	5.59844778695678	0.213513656244797	0.534404669700102	0.853068627162717
Merged-chr4-134930807-4	chr4	134930293	134931293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026780)	promoter-TSS (NM_026780)	-187.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	7.9800684893932	8.06516980257406	7.96185313145109	7.9464233375896	8.02762037435491	7.8851263055561	-0.0669181361102633	0.750663661000356	0.937588367655538
Merged-chr11-111089068-3	chr11	111088572	111089572	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22908.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	3.09886383101564	2.97847505277162	3.05711940676639	4.17217197833	3.78636101062935	3.58285616764061	3.50351583271118	2.26985111711466e-06	0.000111823429101763
Merged-chr4-59803603-4	chr4	59803092	59804092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2058.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	6.2698439351118	5.87298354103279	6.12383978292319	6.10472625972351	5.87620440848496	6.12046966214402	-0.114701861358747	0.709556995192986	0.92401439884764
Merged-chr9-102793100-3	chr9	102792651	102793651	+	841.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41769.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	3.36505632859765	3.36537896907261	3.38360383018117	2.81960960767582	2.94827574003642	3.0565867247305	-1.98097446097368	0.00449308164739231	0.0568013145262019
Merged-chr5-3505730-4	chr5	3505219	3506219	+	986.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38114.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.63721715233479	4.64594051310354	4.58842929707692	4.58319102530163	4.61702068427748	4.84586905729311	0.125382479612509	0.760034709046182	0.940572672765463
Merged-chr9-21143175-2	chr9	21142675	21143675	+	906.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016742, exon 2 of 8)	exon (NM_016742, exon 2 of 8)	6731.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	2.66444418269733	2.7701877320225	2.78895191168757	2.61181100852205	2.54750181708444	2.80172307574525	-0.487427490489253	0.516709083619066	0.844296391152365
Merged-chr3-157628852-2	chr3	157628352	157629352	+	544.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	61960.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	2.1862771317601	2.223759506147	2.45625576508536	2.12869124080695	2.18284453319148	2.28167439071118	-0.650151372812468	0.459070341750151	1
Merged-chr9-60991721-4	chr9	60991235	60992235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25334.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	6.16844539821783	6.23364517450899	6.00764314797762	6.27332817803426	6.38897656209699	6.43995684282567	0.365264946007042	0.192181275315523	0.57920205203809
Merged-chr9-66882593-4	chr9	66882117	66883117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37088.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.44611944586895	7.54685418199377	7.16942252160735	7.15927172874498	7.32710790265148	7.13778734291453	-0.280918616620832	0.255561853128607	0.652663991441209
Merged-chr6-140767108-3	chr6	140766586	140767586	+	850.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140201.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	7.26992979642098	7.65609987601117	7.28315597358696	7.64249396260774	8.07726050322046	7.39865544842605	0.474503611018478	0.095184877069525	0.411148363215922
Merged-chr12-91776481-4	chr12	91776002	91777002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	9934.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.18222335680004	4.03870212224657	3.81659785524391	4.43907186950083	4.08878071562152	3.94510042556283	0.424256547089672	0.417928781422966	0.788440971405969
Merged-chr5-99325027-5	chr5	99324610	99325610	+	765.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-72183.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.67683441119914	7.472859060593	7.32063214943994	7.2777090028057	7.09897821151444	6.95265616916155	-0.56816438596305	0.0236007118295845	0.180129153358656
Merged-chr11-48834478-4	chr11	48833986	48834986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	tRNA-Ala-GCG|tRNA|tRNA	-2985.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	5.67614676472054	6.03948628432504	5.53823177463681	5.58854660712712	6.05776010147825	6.12280551924855	0.290081474003394	0.411368353311327	0.783877099438722
Merged-chr1-191327666-4	chr1	191327179	191328179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	1714.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	7.66431038001762	7.83676590752563	7.68082585608755	7.95022961373816	8.39901467909792	7.85987127666267	0.526537311157235	0.0360715626293703	0.233557122656964
Merged-chr15-57913000-4	chr15	57912520	57913520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 1 of 19)	intron (NM_001356310, intron 1 of 19)	821.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.17261183755202	6.9120307682338	5.96825821935992	7.68582997967548	8.27869566091179	7.57870466844669	1.6343185268677	0.0211625090978782	0.167655913264424
Merged-chr3-81039542-4	chr3	81039037	81040037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3121.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.78754901504539	5.59387444129081	5.7168219483096	5.34905636162705	5.58751249150218	5.47519292846915	-0.413755993614334	0.206278789136042	0.596855755513016
Merged-chr7-134697685-4	chr7	134697173	134698173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	26986.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	4.69265558680961	4.4614501797021	4.83008452426584	5.0464388105921	4.61482330402533	5.09812710885275	0.603896665098219	0.160157094716496	0.53274966067993
Merged-chr2-93598568-2	chr2	93598068	93599068	+	772.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43866.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	4.76858051866166	5.19544298743173	4.83902908833062	4.84872120831857	4.95583775088769	4.97892723665427	-0.0618281683368535	0.876728524964032	0.971370432413299
Merged-chr4-43958370-2	chr4	43957870	43958870	+	735.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	668.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	2.579041487757	2.576911457235	2.64925288078072	2.7779462182065	2.64342415225277	2.84517137005311	0.84705109623781	0.257228670989184	1
Merged-chr12-55464953-2	chr12	55464453	55465453	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27694.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	3.9275682674904	3.61552754088824	3.84256608437325	3.90298402987548	3.90732340425754	3.75656316368913	0.194753478020087	0.714435335139065	0.925889500292054
Merged-chr3-97825487-2	chr3	97824987	97825987	+	624.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-57473.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	2.84193461725351	2.7055132911122	2.65292260936167	2.82108428149202	3.0942813876242	2.91961963405035	1.07706616043957	0.145641938934321	0.508806562677333
Merged-chr14-64185585-3	chr14	64185088	64186088	+	815.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	81265.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	4.70890730128479	4.64111348167779	4.3628658850886	4.60363086948666	4.53597556915458	4.18330212546233	-0.3052616825311	0.505469707752449	0.838131669576059
Merged-chr5-112281302-2	chr5	112280777	112281777	+	776.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	4586.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	7.12588772469396	7.20983408959932	7.31453276608138	6.58757626853678	6.50563349970119	6.79496198228471	-0.910371589529859	0.000313263412626998	0.00722207159166921
Merged-chr6-108564225-3	chr6	108563727	108564727	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58940.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	2.2808268036533	2.26403481388222	2.39679197557841	2.83779238434052	3.23962632327673	2.82019794778611	6.46811107058279	1.40877631016865e-06	7.32176509784593e-05
Merged-chr8-105544035-4	chr8	105543584	105544584	+	782.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	21980.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	4.06612265000254	4.07775166538783	4.12194346610443	4.24503288104407	3.94083292024145	4.44642031189254	0.360408526153061	0.467245178267466	0.817875647788608
Merged-chr3-57696440-4	chr3	57695935	57696935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3898.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	4.50808883913516	4.47448859538378	4.0715049427926	3.8696882154853	4.06172238711989	4.32889064352354	-0.767239895079723	0.129631334590149	0.481622840280538
Merged-chr13-111467486-4	chr13	111466980	111467980	+	827.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028487, intron 2 of 12)	intron (NM_028487, intron 2 of 12)	22647.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	4.94917736721479	4.72310195491633	4.99772067687612	5.09395364810616	5.01551632865508	5.68149508598129	0.827222705881796	0.0458339691752568	0.27049811384742
Merged-chr16-24670100-7	chr16	24669599	24670599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 6 of 12)	intron (NM_178665, intron 6 of 12)	-51756.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.71708529228015	5.81314398922998	6.24455050229258	5.88822605256011	5.52564637134105	5.7395264388995	-0.379973931914611	0.265801061871016	0.663609420192136
Merged-chr3-137957702-2	chr3	137957200	137958200	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	23849.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	2.76144093357367	2.90456180574251	2.93333215642808	2.79651305040573	2.64273108216093	3.17257298528708	0.0803328296318725	0.914707485816486	0.980912729144991
Merged-chr15-80235464-3	chr15	80234917	80235917	+	712.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357659, intron 2 of 6)	intron (NM_001357659, intron 2 of 6)	1337.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	3.81499530983186	3.94852469986061	3.56199248405714	3.61141555432886	3.63287409514181	3.39505223422732	-0.798130969606264	0.171922128498187	0.550414849720006
Merged-chr4-63410210-4	chr4	63409694	63410694	+	997.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6749.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	5.81287889316744	5.44838656095833	5.73160819198735	5.94569855578859	5.76960384192838	5.27854504306161	0.0615651376998919	0.865398782097664	0.968641478520565
Merged-chr4-141669289-4	chr4	141668795	141669795	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-5180.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	4.12269493287759	4.062664698874	4.1930982150455	3.99369436740113	4.10517637001044	3.87135906839241	-0.353629309313249	0.471936972832559	0.820410145940699
Merged-chr7-111122271-4	chr7	111121791	111122791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015573, intron 1 of 2)	CpG	384.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	7.09589551375406	7.28650844034229	7.00962948496863	7.02166769475893	7.25326754448595	6.95557577995114	-0.0751765849034696	0.766638083793418	0.942536715432526
Merged-chr17-50513041-4	chr17	50512538	50513538	+	890.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	3491.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	6.29877195852948	6.70719787057129	6.2870996970367	6.59185871673843	6.61028156534022	5.83583438267027	-0.0743639623794677	0.83041338218487	0.960294586886604
Merged-chr5-65089818-4	chr5	65089339	65090339	+	639.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17729.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	3.88297617517291	3.7404217066337	3.76645146732443	3.71395258333053	4.1324480044538	3.93868036531491	0.45821594604894	0.390692647988876	0.76985705481939
Merged-chr8-60890368-4	chr8	60889854	60890854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357270)	promoter-TSS (NM_001357270)	-39.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	5.74782610140413	5.3881816878583	5.6854401470361	5.51395041396724	5.29297835406802	5.21326681525606	-0.50554637004977	0.148676478891734	0.514496671059407
Merged-chr15-76816768-2	chr15	76816268	76817268	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1402.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.98704211039891	5.8197116893275	5.77230231682799	5.48394003538053	5.44582529908645	5.38042463185866	-0.7993495284542	0.012239631653489	0.115823413013023
Merged-chr17-25861475-4	chr17	25860946	25861946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163766)	promoter-TSS (NM_001163766)	69.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	7.57340741938263	7.91457753977341	7.14185410397754	7.64395851501189	7.48702924894317	7.07550673684615	-0.234803441820155	0.438244326668016	0.800452935582411
Merged-chr11-98789029-4	chr11	98788516	98789516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6500.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.47432596121358	6.82134599072745	6.91910608119267	7.39109116634058	7.56042130185158	6.82144970263247	0.286640166279008	0.376240373018868	0.759106102843962
Merged-chr5-64769473-4	chr5	64768972	64769972	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34051.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.03647195301823	5.15052287788504	5.21429128614318	5.07980381819124	5.09524757722522	4.72799041284517	-0.297950933265626	0.436595675607383	0.799551248563286
Merged-chr10-80663770-4	chr10	80663272	80664272	+	943.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6701.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	5.83283969268495	5.61032629318174	5.60932734798417	5.54411185295086	5.82705481911251	5.02955870819886	-0.304162398290264	0.430142931888974	0.796105989515053
Merged-chr17-26933119-4	chr17	26932620	26933620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302397)	promoter-TSS (NM_001302397)	-7.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	6.8923811320444	6.95180612149516	7.11621338294367	6.82888465589734	6.70416219341404	6.61364412417033	-0.407129877350113	0.108303124766212	0.439573016221011
Merged-chr17-34457598-1	chr17	34457098	34458098	+	853.0	f1_balb.idr	intron (NM_001163855, intron 22 of 23)	intron (NM_001163855, intron 22 of 23)	18339.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	2.50613076401358	2.50830000103427	2.7365262666617	2.69951882627002	2.60880531233829	2.74920159820324	0.573349390918309	0.452638024072656	1
Merged-chr5-135702136-2	chr5	135701636	135702636	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	12991.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	5.61036428414732	5.81087230914673	5.68814103858543	5.49375966814849	5.49596709107943	5.67118760925356	-0.296098677641369	0.355579350820661	0.742472851181279
Merged-chr11-44543731-3	chr11	44543228	44544228	+	597.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	24351.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	4.45925427451425	4.0446283169867	4.56374822861143	4.54968441370399	4.75615944210444	4.92072916124381	0.930130662495529	0.0443654397593631	0.265303897891907
Merged-chr14-31458703-4	chr14	31458188	31459188	+	935.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22588.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	4.91930621716029	4.64188936510705	4.61051811939782	4.47009939196326	4.447019684691	4.2712970117768	-0.808947521108992	0.0636410935586027	0.328767639677588
Merged-chr8-71707955-3	chr8	71707463	71708463	+	879.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028715)	TTS (NM_028715)	-6163.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	3.16996606345639	2.9533073844267	3.1108903183749	3.70128545154159	3.6187212333794	3.37093257092053	2.05393875193331	0.00184789529068243	0.0290551155228842
Merged-chr19-10820314-4	chr19	10819793	10820793	+	947.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	L1MC4|LINE|L1	9765.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	3.43864980035178	3.76457413683467	3.55308178566764	3.3282520589928	3.2058701298718	3.34619278155372	-1.17498429456864	0.0536588606790188	0.296963517085454
Merged-chr4-56757904-3	chr4	56757400	56758400	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 34 of 36)	URR1B|DNA|hAT-Charlie	14478.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	3.69756673617645	3.73945952245317	3.73262368939596	4.87471287791779	4.86625083338866	4.64591754855856	3.12574988893736	1.82545067700029e-09	1.91541109624011e-07
Merged-chr15-59393984-4	chr15	59393478	59394478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	19780.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	5.76496811523255	5.56366673072613	5.44904860871656	5.18108795929515	5.37707900134874	5.22428194547645	-0.648354986638281	0.0600904821790681	0.317334704062808
Merged-chr7-101540892-4	chr7	101540391	101541391	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14911.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	6.74700502251662	6.60694040902629	6.04367875108249	5.38201360972996	5.45134728636132	5.32800967258277	-1.9619932117087	9.56593959064469e-09	8.69904591757774e-07
Merged-chr6-134087842-3	chr6	134087351	134088351	+	833.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	52151.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.09789411612177	3.07117358853867	3.14023355685305	2.94720838733847	3.02999971265363	3.03744263042824	-0.438279902966428	0.505242643760706	0.838055364884185
Merged-chr2-58931997-3	chr2	58931500	58932500	+	757.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	176816.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.43189903873317	4.30599167817414	4.37929276094494	4.13552748433637	4.4629638248139	4.26800327789741	-0.179395370908562	0.695947677974512	0.919291538728398
Merged-chr9-47435406-3	chr9	47434918	47435918	+	749.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94752.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.92595925227185	2.72807929604223	2.86817540092849	2.63761383101328	2.64827982362585	2.94043934667529	-0.513457348383215	0.490219003989849	0.830042606694236
Merged-chr7-126607093-2	chr7	126606593	126607593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12183.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	3.61273263267685	3.80969123118631	3.73896126719756	3.80192249401676	3.6294014642215	4.37934771946319	0.761622786802586	0.192865169020974	0.579895624649198
Merged-chr15-79063035-4	chr15	79062548	79063548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144849)	promoter-TSS (NM_144849)	-189.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	5.34522705694346	4.9340195971528	5.05642312856537	5.25924307661755	5.01111600106909	5.0862840392691	-0.0130086892174889	0.972795173349062	0.993881982649774
Merged-chr6-50060130-4	chr6	50059630	50060630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-50111.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.49022605676999	4.74046368379267	4.42317688918227	4.45182817734251	4.57647030420462	4.49114058292593	-0.137749087613534	0.750183181766862	0.937550343416037
Merged-chr9-40782195-4	chr9	40781676	40782676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19097.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	8.07890060484334	8.30042070684151	8.01026629027283	7.98852844956773	8.39139871850218	8.31919476435547	0.150082538559168	0.52384994523401	0.848428438699863
Merged-chr13-73802537-2	chr13	73802037	73803037	+	760.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	38840.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	4.34690233882443	4.46881295352074	4.70217527345243	4.65062960901902	4.56482691870731	4.7671994530927	0.37309535800441	0.382605063018549	0.764107846408276
Merged-chr7-24905136-4	chr7	24904657	24905657	+	856.854126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130152, intron 1 of 28)	intron (NM_001130152, intron 1 of 28)	811.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	3.53615096093021	3.52522016844811	3.3798918907081	3.79237235926886	3.55630921870937	3.6766448361226	0.666074450329983	0.243459575992802	0.640680222488828
Merged-chr4-59581587-4	chr4	59581076	59582076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024255)	promoter-TSS (NM_024255)	13.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	7.2417623699282	7.64394672344313	7.29901261711449	7.45653184122984	7.82263573948031	7.32140866904152	0.217008382134381	0.422449240000321	0.791229309198916
Merged-chr9-66917614-4	chr9	66917113	66918113	+	888.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	2092.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	6.16872195423574	5.89769873891602	5.9645585146751	5.9266262674604	6.03709492908716	6.31671269392481	0.133135471928898	0.664356869524999	0.907585158243155
Merged-chr13-37960084-3	chr13	37959588	37960588	+	801.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34120.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	6.07820368427589	6.26036078536586	6.15789455201249	5.7558090222299	5.84546290709598	6.17719326382162	-0.415856151457945	0.172802984616296	0.551474167648098
Merged-chr9-118705231-2	chr9	118704728	118705728	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-6464.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.80091274170524	5.80539838357985	5.87646494519201	6.02314113642828	6.12800626934094	6.16135164658403	0.487899465370056	0.09355098849808	0.407357300274648
Merged-chr19-10882556-2	chr19	10882056	10883056	+	754.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	-813.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	3.92235192705969	4.27695801907604	4.04807526163435	3.74740581107404	3.73967470037742	4.52676769240732	-0.104946511977879	0.857452696725748	0.966747388099837
Merged-chr5-92505663-4	chr5	92505152	92506152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	5.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	8.692305526706	8.9419877603428	8.5089169945554	8.55141919674813	8.70357877127499	8.39208499886689	-0.237259980089443	0.301671968807596	0.698377118776631
Merged-chr3-53017128-4	chr3	53016636	53017636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026225)	promoter-TSS (NM_026225)	87.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	6.05024752207584	6.10019952169207	6.030544489682	6.21331895894091	6.11496515670967	5.76427790961176	-0.0106220344663677	0.972078566549959	0.993868590220018
Merged-chr5-28069837-2	chr5	28069337	28070337	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	3.1692601768783	3.11589031846864	3.07094176474472	3.50675538249329	3.00013974659292	3.26485796958831	0.629552369445612	0.348433431449687	0.736287772996185
Merged-chr19-41802059-4	chr19	41801522	41802522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163495)	promoter-TSS (NM_001163495)	62.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	4.64071437997131	4.77601676286264	4.52771692863029	4.96852662157757	4.48688141770233	4.76036265942425	0.210791880187196	0.62497395825056	0.892311037285785
Merged-chr17-86677551-4	chr17	86677031	86678031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-76333.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	5.1337127537716	5.10276484542503	4.73327128775598	4.27011991442209	3.94703823594576	3.8594294718761	-2.50030502544438	5.98016975803633e-07	3.44358453444074e-05
Merged-chr2-84660470-4	chr2	84659981	84660981	+	921.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145100, intron 2 of 4)	intron (NM_001145100, intron 2 of 4)	1402.0	NM_001145100	100270744.0	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718	BTB (POZ) domain containing 18	protein-coding	3.46730124572975	3.27184162336207	3.33457631650603	3.52611553762438	3.37732795997511	3.67077149479305	0.613638285442939	0.305583377920954	0.701697220401146
Merged-chr12-21543417-4	chr12	21542917	21543917	+	900.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-125981.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	4.85368013711647	5.08342905911222	4.67959490724782	3.6457712536374	3.31700861865137	4.18831335001677	-3.03021673665984	0.0381528376173612	0.241691763415713
Merged-chr19-7058478-2	chr19	7057978	7058978	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1710.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	3.90445539461035	3.66243538833975	4.0528812695637	3.82362081734596	3.9295034001583	3.78102503149475	-0.0776013767305949	0.884093603632637	0.973466734537782
Merged-chr11-80176914-3	chr11	80176416	80177416	+	946.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 9 of 10)	intron (NM_172133, intron 9 of 10)	-6956.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.07689174420142	6.8807218986278	7.30984984184301	7.23277244202533	7.53186192794382	7.20694664353155	0.368660258903525	0.159860347276601	0.532321973758633
Merged-chr4-119978051-4	chr4	119977567	119978567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	163389.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	7.45284474193164	7.27358874629979	7.49884606029846	7.27032969729231	7.27862145739907	7.1463799777038	-0.254636639007883	0.277347482238421	0.674551767497274
Merged-chr6-70871678-4	chr6	70871167	70872167	+	967.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27152.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	6.84063076540248	7.19722435862931	6.748144639879	6.53654367870938	6.76435553767403	6.41694355322984	-0.561939358764252	0.0484882480727556	0.279334013019773
Merged-chr15-62120976-3	chr15	62120469	62121469	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81712.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.27306612829808	3.2149783113207	3.05421131526281	3.30837456193242	3.06943607362895	3.57308486126643	0.559848394240263	0.401076346384115	0.777158973264623
Merged-chr3-106684963-4	chr3	106684474	106685474	+	984.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039478)	promoter-TSS (NM_001039478)	-13.0	NM_001039478	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	4.74243948518787	4.77917561246955	4.68700524579286	4.78231112740573	4.7427062453459	5.13949112813778	0.336341412255297	0.406315651999799	0.780646569949505
Merged-chr7-101822039-2	chr7	101821539	101822539	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001122739)	TTS (NM_001122739)	3726.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	3.05506551281667	2.8388980338121	2.89169008865647	2.60100439636517	2.3857847800506	2.71830158940835	-2.15832287164232	0.0108043831489446	0.10615316012013
Merged-chr14-73142445-4	chr14	73141942	73142942	+	803.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-68.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.50147612210767	7.66173625027067	7.73073847567266	7.94966503876529	8.00524296424712	7.65177091300387	0.366058751734844	0.117967938657634	0.45866437268466
Merged-chr6-136449445-4	chr6	136448901	136449901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33832.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	5.09960269683442	5.04187433022384	5.07530565572238	5.47139123536434	5.45813179858063	5.51625394440387	0.818291390464903	0.0167117714786648	0.143385551783537
Merged-chr15-79694655-4	chr15	79694168	79695168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 2 of 11)	intron (NM_013818, intron 2 of 11)	3772.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	4.54261208825821	4.52417340928273	4.88118802542296	5.20565528326886	5.45819895787796	5.42685478672376	1.56983228420681	5.23602072158427e-05	0.00164283111689888
Merged-chr11-51584154-2	chr11	51583654	51584654	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	-603.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	8.17908447885114	8.7791348742654	8.155541152915	8.05585445024981	8.48072048106115	8.33961379207191	-0.147399029290494	0.588437169747606	0.876462122661442
Merged-chr2-125792763-6	chr2	125792302	125793302	+	839.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9932.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	5.19859994724427	4.92749885942271	5.33747991339138	5.39660180757779	5.73090784292232	5.72754955264552	0.923571904739693	0.0103219807361516	0.102662129224684
Merged-chr5-139401960-2	chr5	139401460	139402460	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-4427.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	3.73353607450659	3.63829019952449	4.25343896661573	3.53083500603426	3.60551350083871	3.98689991663962	-0.567799667230714	0.341114139016259	0.730686899066382
Merged-chr10-60349220-4	chr10	60348715	60349715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	2364.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	7.07116643973505	6.9323015372825	6.68699153093767	6.99171015413817	7.03854177536909	6.81086661148555	0.0633221183784299	0.808069319942119	0.954605755203254
Merged-chr7-92885639-4	chr7	92885129	92886129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028243, intron 1 of 8)	LTR48B|LTR|ERV1	10376.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	7.52761764454852	7.7380087892971	7.22721836310785	7.4225366907974	7.70017104939965	7.36778363573986	-0.0166360831885139	0.949228803806955	0.988169196639905
Merged-chr3-95230831-4	chr3	95230332	95231332	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1889.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	6.87503645715675	6.62242361947952	6.87652778378782	7.06990364255513	7.37244035499075	7.24296245639568	0.677762203849312	0.00794940191103648	0.0857027512585545
Merged-chr9-70843605-3	chr9	70843120	70844120	+	853.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	B4A|SINE|B4	91188.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	5.2140514177061	5.25909870422549	5.20302072498432	4.99080915832965	5.09798613983696	5.41698344286017	-0.116225547258052	0.750469763619778	0.937550343416037
Merged-chr16-78237946-4	chr16	78237448	78238448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17506.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	6.73638552944829	6.61182805813225	5.90538876805532	6.55638821691698	6.75826705637351	5.6659633134175	-0.0966977452786769	0.888629500304565	0.974088152254601
Merged-chr9-35060091-4	chr9	35059619	35060619	+	914.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	-56609.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.19610083663521	5.10233066914173	5.43996110445421	5.11531849589021	5.14595637692761	5.50190038301454	0.0226399072645474	0.951294312617647	0.988749090190481
Merged-chr6-117921495-4	chr6	117920986	117921986	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166429, intron 3 of 3)	MER20|DNA|hAT-Charlie	4192.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	3.4322478846364	3.1654961535754	3.80126805609046	3.52874415753279	3.04587582236484	3.36661187762075	-0.596371171434518	0.382199299592349	0.763819347060188
Merged-chr3-15285107-4	chr3	15284660	15285660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47142.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	7.6725608192055	8.05488720677657	7.09662414591167	7.26493356678418	7.3956707295147	7.27111642726235	-0.531944249551932	0.0781909189160268	0.369227800775351
Merged-chr1-138172889-2	chr1	138172389	138173389	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	2237.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.78286267991813	6.12249168594499	6.03040856087308	5.78465678985187	6.07049927560971	5.90575479704981	-0.0942329776045645	0.762816590786675	0.941663714620562
Merged-chr12-100501439-4	chr12	100500942	100501942	+	897.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	19380.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.42330903084933	3.67804273937439	3.55512430894529	3.15337382144031	3.17028053144602	3.30078173744475	-1.45170571561947	0.0199153400049887	0.160963148240417
Merged-chr17-50121231-5	chr17	50120675	50121675	+	875.6966550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	69322.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.7425654613185	4.8985326728578	4.70344922714297	5.62937566048742	5.67579700508558	5.69496636871752	1.77595592553243	8.97255175435611e-07	4.93775189402423e-05
Merged-chr18-70435209-1	chr18	70434709	70435709	+	813.0	f1_balb.idr	Intergenic	Intergenic	-37245.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	3.01680184263235	2.62120264325025	2.81023127573737	2.97500908419682	2.73598701690335	3.06378638150418	0.48622067441692	0.518724172242965	0.84542522050122
Merged-chr16-43379500-2	chr16	43379000	43380000	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	L1_Mus3|LINE|L1	40696.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	5.25677251571972	5.25708449672197	5.55988024512522	5.44863007450601	5.37439779460864	5.36529356245378	0.084353736422888	0.806304788636052	0.954125791654011
Merged-chr12-100725260-4	chr12	100724764	100725764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330702)	promoter-TSS (NM_001330702)	-144.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	6.54466410268891	6.78713874726249	6.21919775373769	6.46650674914757	6.48085492708464	6.34317220038257	-0.186162588456248	0.52500015921897	0.84884700169621
Merged-chr11-118201624-3	chr11	118201101	118202101	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11141.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.53426438255172	6.70657146384974	6.82287704626614	6.396147805704	6.47503285389567	6.08122647648368	-0.558437849752048	0.0506080351149422	0.286520608685045
Merged-chr15-8681282-3	chr15	8680764	8681764	+	933.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	29543.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.85044992735628	2.93429524998664	3.08552307905871	2.78907677156997	2.97678166760265	3.26454477240845	0.28876201793884	0.684951007838894	0.916057018456004
Merged-chr6-50110134-4	chr6	50109625	50110625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-116.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.60851488154277	5.20398331727411	5.16706106154971	5.39938729845837	4.78426321983117	4.6293481338602	-0.731325831521541	0.0991357012400502	0.419790505281532
Merged-chr3-101012265-3	chr3	101011784	101012784	+	910.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167906, intron 5 of 8)	intron (NM_001167906, intron 5 of 8)	17211.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	2.43688739305968	2.56627982486168	2.47113177296082	2.53689180799237	2.48644656249323	2.79210008365673	0.651235286202576	0.412770412098634	1
Merged-chr6-32587655-2	chr6	32587155	32588155	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175750, exon 1 of 32)	5' UTR (NM_175750, exon 1 of 32)	537.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	5.33291913701225	5.18217198865566	5.2662241015436	5.22608512864193	4.68592105738561	4.83663190021706	-0.684936116871417	0.0831285692387892	0.381505377849687
Merged-chr6-115854661-2	chr6	115854161	115855161	+	828.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 1 of 28)	B2_Mm2|SINE|B2	1133.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	4.15213821439275	4.3078680407898	4.04259262637375	3.9161796873845	4.0488116692979	4.15916018753582	-0.392098021658084	0.421471035418877	0.790322303942262
Merged-chr6-110041629-3	chr6	110041137	110042137	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-603875.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	3.30561392871019	3.33185844633483	3.33994000861596	3.54576604253351	3.30770709051879	3.41170745085527	0.378945889114991	0.526281512919899	0.849393421135098
Merged-chr12-116283117-4	chr12	116282623	116283623	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	1901.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	2.84648831215941	3.12124249917988	3.16709356527668	3.00793412506866	3.0270996207283	2.9455934637138	-0.245375659484796	0.720959079014578	0.928324696220711
Merged-chr7-45525482-4	chr7	45525034	45526034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	734.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	8.82746766353296	8.97826531135851	8.69078796135018	8.65751638013224	8.93012331637789	8.66790976182998	-0.108461253483334	0.615687337093348	0.888073730124794
Merged-chr11-98203698-3	chr11	98203234	98204234	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	429.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	8.27549425204345	8.59992732201882	7.98237036208814	8.35202349077667	8.57985098572305	8.08414839510231	0.0596079908566905	0.82219287748861	0.958041123079214
Merged-chr7-126696628-1	chr7	126696128	126697128	+	544.0	f1_c57bl6.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	628.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	4.37420947336795	4.24458898942785	4.77697209303441	4.22061457282703	3.90115044335384	4.66873560320699	-0.47371962291369	0.371596423914274	0.755694928635403
Merged-chr7-42490584-2	chr7	42490084	42491084	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001309388, intron 2 of 6)	intron (NM_001309388, intron 2 of 6)	15169.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	3.79470277753351	3.64915334794169	3.72449144089845	4.00656946906834	3.97854305352801	4.13671518073605	0.984329429443641	0.0559829639468434	0.304655602611252
Merged-chr7-101383932-4	chr7	101383427	101384427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1599.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.37990584746104	8.18102828171062	7.89312753352067	7.82403078469185	8.39105212626541	8.10822709393634	-0.0537500450188942	0.838166746399844	0.962431352564932
Merged-chr7-119872430-2	chr7	119871930	119872930	+	731.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	23028.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	2.90998144905244	3.16340509103284	3.15488947054557	3.06778936138415	3.40465073574381	3.59766904339771	1.20011687728401	0.0792470868169255	0.37212142211415
Merged-chr14-103343415-4	chr14	103342862	103343862	+	711.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	3438.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	6.19074708446539	6.36614073046992	6.10185061742435	6.50884759061572	6.73060824058387	6.2518926164291	0.479810992966868	0.103823083119856	0.429625576896608
Merged-chr4-53064800-2	chr4	53064300	53065300	+	894.4285890000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 30 of 49)	ORR1D1|LTR|ERVL-MaLR	52920.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.66974118156705	2.6234975081408	2.43471570489432	2.61253635283664	2.46095141864353	2.70394572590979	0.0486335731108192	0.95129946596871	1
Merged-chr13-98942207-2	chr13	98941707	98942707	+	890.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15823.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	3.97322335315479	3.87539097783264	3.70332783837227	3.97386226126993	3.92129834929876	4.12538823407033	0.430829597080321	0.403244301785863	0.778694141497786
Merged-chr11-46035289-3	chr11	46034795	46035795	+	959.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER119|DNA|hAT-Charlie	-19207.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	2.26633892713762	2.35697663499539	2.27541961845788	2.62617507383223	2.62088328982117	2.80254254106117	2.50736266466813	0.00517031515785325	1
Merged-chr13-66434470-2	chr13	66433970	66434970	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290196, intron 1 of 3)	B3|SINE|B2	6648.0	NM_183119	76803.0	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	3.04115965594426	3.62325521723298	3.35888202844256	2.95140602748311	3.07886465176753	3.083402015769	-1.38326886797501	0.0483620767059059	0.278939836497854
Merged-chr12-102292734-2	chr12	102292234	102293234	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	9093.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.98527518245814	2.90406854353792	2.98971362835546	2.93150226614181	2.65240549147124	2.75430712347655	-0.892095611530074	0.219451584884256	0.61370328275355
Merged-chr1-173630790-4	chr1	173630290	173631290	+	913.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175026)	promoter-TSS (NM_175026)	-69.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	5.33855797359658	5.14195331653905	5.04462793004214	5.64655334760807	5.70553015760626	5.70024956031287	0.954306749628971	0.00503170732569825	0.0614979881252497
Merged-chr5-99213976-3	chr5	99213494	99214494	+	958.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38933.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.20941566982197	6.18549149370675	6.12791229967241	6.14823063313279	6.06501634647167	5.68695537917855	-0.311480242248769	0.30691788616657	0.703091920100449
Merged-chr5-120511152-4	chr5	120510665	120511665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133221)	promoter-TSS (NM_133221)	-27.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	7.47888710169838	7.46053117373772	7.2941490147133	7.40936218524273	7.63297599544923	7.21960480256339	0.035240716321721	0.886066411691107	0.973677235958237
Merged-chr1-131702612-3	chr1	131702067	131703067	+	730.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	13872.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	3.37705261055208	3.22618084276456	3.5486907527022	3.58553107400382	3.65311789166056	4.04366530724088	1.37611612129239	0.0226841821883325	0.17555921509509
Merged-chr3-67576454-4	chr3	67575939	67576939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6329.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.33375782391956	3.4786313181792	3.42485083844602	3.4288639577305	3.53538547891689	3.26453575467739	0.0311418062485876	0.958755169853221	0.99015359851262
Merged-chr1-156469445-3	chr1	156468943	156469943	+	828.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	4885.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	8.07333734968841	8.18037397082255	7.56742609757898	7.91614716559921	8.0466434077792	7.47398345140479	-0.187590172542053	0.505721910668278	0.838177729332582
Merged-chr2-32450504-4	chr2	32449997	32450997	+	905.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	40.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	6.60909065770437	6.36394274728667	6.60437574123889	6.75093210773969	6.99469682056671	6.94853786451665	0.592561267724512	0.0246599229583045	0.185446346236414
Merged-chr17-23804875-4	chr17	23804251	23805251	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	intron (NM_175229, intron 1 of 13)	1564.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	6.54430228645265	6.63996767168671	6.62209398850818	6.81981855749927	7.20600717473642	6.9685801524806	0.641554613493198	0.0144882756912459	0.129558349674066
Merged-chr6-85068577-3	chr6	85068095	85069095	+	874.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 1 of 21)	ID4|SINE|ID	918.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	3.31052882771126	3.42419501814909	3.39287371639366	3.26659661012918	3.05440708183151	3.35419042832279	-0.624408190855377	0.319271328613615	0.71327503587815
Merged-chr7-43465557-4	chr7	43465061	43466061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290316, intron 4 of 9)	intron (NM_001290316, intron 4 of 9)	2328.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	6.52526828303835	6.26349613841587	6.60910931462384	6.72551030809335	6.44718611721024	6.53319811646157	0.168886373938745	0.546066149636118	0.85849711034619
Merged-chr4-99062203-4	chr4	99061698	99062698	+	717.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026082, intron 11 of 47)	L1MB8|LINE|L1	31244.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	4.77422331360595	4.62916258130633	4.90327278648214	5.08259624524991	5.38576851552956	5.07442871785596	0.960360953323696	0.0134089548688167	0.123217263028658
Merged-chr11-44390191-4	chr11	44389701	44390701	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9862.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.11610600410747	3.87535443675586	3.7120804240903	3.75277370987361	3.87848846605563	3.83719210464067	-0.293892508850479	0.581469358024268	0.873298754324848
Merged-chr6-113752453-4	chr6	113751948	113752948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11767.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	6.6595891260511	6.72111338471013	6.63264494284574	6.7551864472766	6.84957598835914	6.57111560344746	0.103349393134812	0.688843816343888	0.917235946766438
Merged-chr1-184616964-2	chr1	184616464	184617464	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59273.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.08966338436256	6.04771349616355	5.96599662710455	5.45371039241163	5.94569045802661	5.64323999375268	-0.57960893329944	0.0764809146838889	0.364240416166104
Merged-chr13-60676112-2	chr13	60675661	60676661	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	73950.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.34009032645055	5.44794828670489	5.67420019912004	5.34449325328104	4.99901782366016	5.60975539590538	-0.313095389506808	0.405740658201345	0.780417676551491
Merged-chr12-103425134-2	chr12	103424634	103425634	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_020494, intron 1 of 8)	ID_B1|SINE|B4	646.0	NM_001159502	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	6.30299991539018	6.69439810762669	6.5753634918001	6.40077275145516	6.59761547201098	6.51399001228373	-0.0406497000613651	0.884561390027985	0.973514769412718
Merged-chr2-93459482-4	chr2	93459004	93460004	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2347.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	7.04727992346998	6.71698261614936	6.14629951147421	6.5901266261597	6.43526690358195	6.16076845684612	-0.459031483269788	0.176710387544982	0.557212290694362
Merged-chr4-137865513-1	chr4	137865013	137866013	+	942.0	f1_balb.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	3276.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	6.25709597397084	6.30239438179207	5.96638772458788	5.61600568289538	5.58956418890849	5.41324122243283	-1.14075290772423	0.000294992218167708	0.00687170002499962
Merged-chr10-25450516-2	chr10	25450016	25451016	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	42148.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	3.88985668711734	4.08747163697989	3.7236203285597	3.58171896805032	3.3746707479607	3.7417812440874	-1.18771129976316	0.0381214064858524	0.241621474497643
Merged-chr10-99203393-4	chr10	99202887	99203887	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59844.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.90665964001193	6.0013524763449	5.92159803453592	6.13989548955988	6.24872123498472	5.53579306953537	0.143222818468401	0.672764468281443	0.910949422492829
Merged-chr13-44420027-4	chr13	44419541	44420541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19686.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.44105238289236	5.69144956539409	5.15400573913489	5.59118095322449	5.34304152064684	5.28961549332735	-0.0846712075168654	0.816972352324599	0.956754861188725
Merged-chr16-94602778-3	chr16	94602281	94603281	+	942.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8638.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.87156527889407	6.99312602947994	6.82446054280641	6.39286774254703	6.90269584464269	6.55758233861558	-0.395200457782809	0.160059791073079	0.532632297979799
Merged-chr18-12133361-2	chr18	12132861	12133861	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4511.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	4.75570455419025	4.42833024299387	4.76165635441757	4.85214638483287	5.01337558652585	5.007294180974	0.700469981040043	0.08402002077529	0.383661081936741
Merged-chr9-99181561-2	chr9	99181061	99182061	+	913.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-41350.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.552905061791	7.66125336513491	7.31439013501631	7.6492575765464	7.7373190016148	7.3365527503705	0.101076208605236	0.685923509193326	0.916538830253462
Merged-chr5-137510295-4	chr5	137509787	137510787	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	-7858.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	6.5725018403843	5.89128396368779	6.26322652197164	6.26976714922411	5.52440826439431	5.8539728494952	-0.603789874118591	0.105253159776343	0.432959507547457
Merged-chr3-65958256-4	chr3	65957749	65958749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	0.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	9.33804490256273	9.38590632811844	8.88599742748944	8.8908029779535	9.03550467335766	8.71451370107099	-0.458983402525839	0.0511341222292869	0.288222925002768
Merged-chr1-151601548-4	chr1	151601049	151602049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	30176.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.33782868647911	7.26054261646513	7.07670632992433	6.96507245058578	7.25262725581602	7.40196186562681	-0.0284424158802414	0.911507542378813	0.980133875917607
Merged-chr16-11067571-2	chr16	11067071	11068071	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	1273.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	4.18105800038955	4.15391552561403	3.84989042889679	4.20819942756151	3.94338319697765	3.97472930238474	-0.0911334779579007	0.857506903605734	0.966767080388296
Merged-chr1-180246382-4	chr1	180245877	180246877	+	990.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011183)	promoter-TSS (NM_011183)	-427.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	3.21526127885631	3.04651724866403	3.14808027166946	3.09596268104685	2.95979218367637	3.33029465901072	-0.0361573790246214	0.956549894668711	0.989887454023164
Merged-chr10-128297177-1	chr10	128296677	128297677	+	684.0	f1_balb.idr	exon (NM_031252, exon 3 of 4)	exon (NM_031252, exon 3 of 4)	907.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	2.25552751095621	2.22156835529784	2.49776958175819	2.15821982397907	2.11702070726191	2.44949347164681	-0.548680614716977	0.53826413195253	1
Merged-chr9-118599932-4	chr9	118599420	118600420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-6789.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.0845714291658	3.75116681879726	3.69939520544968	3.64915867556141	3.39542131113283	4.06165506694308	-0.43063500738408	0.476522072275339	0.82257619929543
Merged-chr13-101760462-4	chr13	101759966	101760966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	7751.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.68757891846734	4.91692548852334	4.79065847712766	4.92557795604027	4.81587264931192	4.96637425171438	0.212563728686516	0.585806608041051	0.875131338300747
Merged-chr2-91933302-2	chr2	91932802	91933802	+	580.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_138306, exon 31 of 31)	3' UTR (NM_138306, exon 31 of 31)	-1005.0	NM_010784	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	2.50761197961256	2.43550686029647	2.49844827484732	2.54550482435761	2.33105233277977	2.69641982224479	0.279745823177979	0.729889713898008	1
Merged-chr16-94223247-5	chr16	94222770	94223770	+	965.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	67021.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	7.69400837930378	7.83538185520385	7.56623616983882	7.8645560136467	7.92565266202167	7.6229497343567	0.156510089357883	0.500411069541063	0.834978949366358
Merged-chr10-20839104-4	chr10	20838604	20839604	+	928.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113443.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	5.21028078663889	5.11320219595225	4.83182545976755	4.98847911271554	5.26708266256182	4.89900912326832	0.0047916043458272	0.990264121603468	0.997758582642691
Merged-chr1-171058563-3	chr1	171058039	171059039	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010188, intron 2 of 4)	intron (NM_010188, intron 2 of 4)	855.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	5.67995760072205	5.81016844827695	6.04513854653744	6.27840319509731	6.44258597426915	5.91757921340312	0.686755206721347	0.0317679935231317	0.216150804189643
Merged-chr7-27673737-5	chr7	27673247	27674247	+	887.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198417)	promoter-TSS (NM_198417)	834.0	NM_001290528	269881.0	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	3.72119652915904	3.53134411832698	3.64114874140857	3.91431043016534	3.56633300578306	3.36377956140009	0.0202618985624926	0.972934317436408	0.993897323428832
Merged-chr1-172370235-3	chr1	172369774	172370774	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039484, exon 2 of 2)	3' UTR (NM_001039484, exon 2 of 2)	-6257.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	5.23657345764775	5.24812775649126	5.04459807320306	4.18387607233595	4.28482635880471	4.48718051556697	-2.0699660195218	9.53659769344219e-07	5.20341784180943e-05
Merged-chr5-24828656-2	chr5	24828156	24829156	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 1 of 7)	Lx9|LINE|L1	13705.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	3.10995027904436	3.08967728729243	3.51328456878263	3.09749286562823	3.02771875721792	3.32784454006263	-0.389449878162271	0.561504362697573	0.865407801976397
Merged-chr7-97205637-2	chr7	97205137	97206137	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	Lx3_Mus|LINE|L1	120327.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	3.08898605442227	2.88034415726001	3.1060741286396	2.91435376821987	3.04804521133257	3.44320471439102	0.528842593875256	0.450651197986964	0.808443910792592
Merged-chr16-30390757-4	chr16	30390261	30391261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2231.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	6.67294336768147	6.27213146612811	6.27822613052568	6.45495870982661	6.57655177020198	6.23292157092183	0.0167916772129717	0.954937314146855	0.989683851514547
Merged-chr1-37430102-4	chr1	37429570	37430570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356528)	promoter-TSS (NM_001356528)	33.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	8.5246618522961	8.60705416998223	8.28137456458676	8.61717517418361	8.7261196578096	8.1753613491701	0.0727373346934749	0.767110106432832	0.942573703853445
Merged-chr4-141957931-4	chr4	141957415	141958415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-25077.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	4.56668048159004	4.64543563867326	4.22243170757112	4.77879464940545	4.77743272322401	4.5766324351712	0.516003625472	0.241617555862967	0.638725174362873
Merged-chr17-31072156-2	chr17	31071646	31072646	+	779.0	f0_balb.idr|f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	14452.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.71157805041082	6.39077188854359	6.55674753747855	6.23748596140117	6.48187841792896	5.95083841039273	-0.492125449245036	0.106852503926794	0.436347896711652
Merged-chr9-13669997-2	chr9	13669497	13670497	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	7537.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.191020740247	3.37257576322748	3.1900740247106	3.19288069181197	3.07770219156545	3.53275521325646	0.0702180491466131	0.914398331201571	0.980912729144991
Merged-chr9-120012902-4	chr9	120012353	120013353	+	794.99585	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011724)	TTS (NM_011724)	10745.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	2.51330975940343	2.28331937626524	2.71182598724604	2.67503070064698	2.5252235101517	2.90176142526031	1.09805038562542	0.195233493102492	0.582885610090219
Merged-chr17-8165740-4	chr17	8165244	8166244	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201230, intron 1 of 11)	CpG	226.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	6.35084551771804	6.73752658239284	6.6465156905109	6.41036768195655	6.36529888433969	5.99079669260438	-0.501053936458382	0.094827353000188	0.410509046794633
Merged-chr9-58265641-2	chr9	58265141	58266141	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12477.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	4.43021527166513	4.6737410703536	4.79619775743873	4.78928224318272	4.68839685001473	5.03220646465721	0.463339888751494	0.269785074341065	0.66689273835511
Merged-chr3-107785443-4	chr3	107784951	107785951	+	836.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24982.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	3.33435824245123	2.79795629880146	3.11125047817638	3.08933868189684	2.68806049885482	3.06679743096549	-0.631860868613771	0.40707099023989	0.781263634491412
Merged-chr3-146135102-4	chr3	146134612	146135612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134160, intron 8 of 11)	intron (NM_134160, intron 8 of 11)	13321.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	5.22638727425657	5.04859375145425	5.23249239314648	5.03395167426436	5.08128616767975	5.20093595889313	-0.136300908501119	0.705230544089714	0.922741502541387
Merged-chr10-117941051-5	chr10	117940494	117941494	+	983.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	intron (NR_045342, intron 3 of 3)	15535.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	7.85759896105764	7.94867647879318	7.2552165662048	8.28075683179943	8.67614280443788	7.67719739224901	0.782628310778527	0.0173419409646948	0.146883980434683
Merged-chr5-102000468-2	chr5	101999968	102000968	+	672.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	Tigger5|DNA|TcMar-Tigger	69453.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.43237195413412	6.02058041221715	6.12453597842062	6.07538521180201	6.0848168574819	6.20614701460744	-0.150958486313699	0.613964935890708	0.887338990172734
Merged-chr6-125147634-2	chr6	125147134	125148134	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	2410.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	6.99852945948068	6.91630399029581	6.53171096693674	6.82375898300191	7.1872408947635	6.87473528670434	0.212144610823791	0.450804178943617	0.808622732738337
Merged-chr7-63905330-4	chr7	63904850	63905850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-11507.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	8.00021233889747	7.62541012227216	7.62471863297191	7.84265158291531	7.75079275673098	7.51196781836753	-0.0763742122584602	0.757891318903568	0.939984511072278
Merged-chr3-96244789-3	chr3	96244293	96245293	+	941.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-664.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	8.57359311158417	8.87772003549899	8.37986164854878	8.53132660072769	8.77107240406497	8.42928013503587	-0.0590547794548292	0.805544257911015	0.953956034266138
Merged-chr2-128573362-3	chr2	128572866	128573866	+	749.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18975.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	1.92001148939241	1.89245121082067	2.11997753498177	1.8565179698304	1.86050891443177	1.93328682404498	-0.806365552937403	0.404047427869304	1
Merged-chr17-48300997-4	chr17	48300520	48301520	+	749.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360121, intron 1 of 4)	intron (NM_001360121, intron 1 of 4)	982.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	4.29477275284674	4.3302180899547	4.57081003052487	5.10796855432593	4.77359744157145	4.67956080731373	1.13909951494361	0.0084242087568228	0.0893172225073537
Merged-chr9-25522668-4	chr9	25522146	25523146	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	MIR|SINE|MIR	41049.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.79181870245816	3.60394616057183	3.58569383882372	3.77650357296361	3.63382375160297	3.76287330936745	0.184714356694909	0.735151332362837	0.932617455907478
Merged-chr4-141832427-4	chr4	141831939	141832939	+	921.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6434.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	3.42151900294995	3.41407410480395	3.60745474678857	4.72752577977565	4.68221386294318	4.72273431712918	4.24325058110435	4.13924943583609e-11	5.95880046811504e-09
Merged-chr11-29808119-2	chr11	29807619	29808619	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	17549.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	6.93178421192909	6.81637269032238	6.27506831352269	6.94742597329075	7.06274255349297	6.87746886333308	0.384418146473749	0.188623597414351	0.574222837446979
Merged-chr12-113156239-4	chr12	113155752	113156752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-169.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	6.16697332851657	5.80489697517482	6.05895085324686	5.99429739043286	5.75418438901305	6.00886824433225	-0.175625882182656	0.573762368160674	0.870292198441646
Merged-chr8-3264373-3	chr8	3263856	3264856	+	740.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 1 of 21)	Lx7|LINE|L1	15261.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	2.84002853109505	2.90082701184032	2.92969383948507	2.95416817901812	2.53299355209048	2.62197824455417	-0.8949147404942	0.251823077519052	0.649404780084462
Merged-chr13-35749363-4	chr13	35748846	35749846	+	962.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	Lx9|LINE|L1	7944.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	3.58119454048301	3.34268250355501	3.74106730237322	3.66665784983914	3.83604807877103	3.95326901797123	0.893596704650046	0.117256599892539	0.457311976431135
Merged-chr5-147758868-4	chr5	147758402	147759402	+	989.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32914.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	5.56273504491403	6.20578820313835	6.22269194041147	6.56484355921404	6.86362772965938	6.01253283483985	0.834247388197979	0.0248725915011871	0.186483420222405
Merged-chr7-142382336-1	chr7	142381836	142382836	+	554.0	f1_balb.idr	intron (NM_009983, intron 4 of 8)	intron (NM_009983, intron 4 of 8)	5534.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	3.37626966689787	3.19172607766693	3.43044241895159	3.79392644307618	3.67036995284282	3.95824353441452	1.73468706084848	0.00351688334498818	0.0473286154568618
Merged-chr4-111719942-4	chr4	111719435	111720435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026470)	promoter-TSS (NM_026470)	-75.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	6.86006554461881	6.59549562590536	7.19487324148884	6.7346988644201	6.83171038826146	7.25233802715657	0.0828565276977636	0.783612230973498	0.94726085620041
Merged-chr2-29649417-4	chr2	29648900	29649900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	29680.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	6.67992390398319	6.51041726791481	6.16513003979412	6.44635078993336	6.48852509492278	6.41296425097459	-0.0487033008256262	0.865394776767913	0.968641478520565
Merged-chr6-124730021-4	chr6	124729517	124730517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	3137.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	7.05167231481228	6.71685567355121	7.05823834332901	6.94475407426823	7.19557732752669	6.75837575738688	0.0633195135871011	0.817547050070886	0.956767881392089
Merged-chr5-139325621-4	chr5	139325118	139326118	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-154.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	6.8252032390528	6.71847374589674	6.90152978615583	6.72988169992272	6.40215955899246	6.66149725851861	-0.338295352911166	0.203360738003164	0.593269766768364
Merged-chr3-149084347-1	chr3	149083847	149084847	+	653.0	f0_balb.idr	Intergenic	Intergenic	-129712.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.04644218354213	5.33200092786044	5.3222295704466	4.09471977568259	4.15597312154372	4.16955966357265	-2.70925104014339	2.85870003973143e-09	2.91860997430641e-07
Merged-chr19-4191083-2	chr19	4190583	4191583	+	998.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178650)	promoter-TSS (NM_178650)	-36.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	3.8208469071001	3.89490062123728	3.64437738413713	3.72615282343565	3.81820212065756	3.71577803972785	-0.130015005296386	0.807954131882658	0.954583809755663
Merged-chr3-31090187-4	chr3	31089676	31090676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4882.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	4.35453261198465	3.97898219089047	4.1227060536523	4.67241328298274	4.06521820247449	4.58481334073171	0.785361358490883	0.124669020804921	0.472306664538883
Merged-chr5-25498597-4	chr5	25498085	25499085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081383, exon 1 of 59)	5' UTR (NM_001081383, exon 1 of 59)	198.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	7.30829109372946	7.78397147826284	7.54640086085984	7.42739242812166	7.19372983244343	7.33378732359217	-0.358753683838837	0.158271802474688	0.530001615434394
Merged-chr1-181921698-3	chr1	181921199	181922199	+	904.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79298.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	3.82872646032685	3.89595870848645	4.07834126892472	4.07508100069483	3.67690773743588	3.80604318245445	-0.220773352282632	0.678568842365544	0.913498554171186
Merged-chr19-36897941-2	chr19	36897441	36898441	+	896.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	21658.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	1.86529511921548	1.64238983193222	1.79688229366233	1.95489355197449	1.86598418448211	2.07897332533814	1.75088612634597	0.103257532484686	1
Merged-chr15-100754264-3	chr15	100753772	100754772	+	891.5888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7475.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	3.54706027455394	3.39602016313361	3.35691636782964	4.16369512153314	3.79448004182294	4.11787173410652	1.99898824393353	0.000688130858683768	0.0135042435116413
Merged-chr17-32993140-4	chr17	32992677	32993677	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045559)	promoter-TSS (NM_001045559)	38.0	NM_001045559	240067.0	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding	6.12220565038377	6.39760876708841	6.58573226971431	6.74318655759445	6.69610910701825	6.69291805922542	0.542709415630842	0.0507540643023121	0.286946140373269
Merged-chr10-118596665-2	chr10	118596165	118597165	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40140.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	6.05662044358679	6.04437330225967	6.1028146169357	6.1769307326556	6.06615978352412	6.2050719027444	0.136201631599518	0.629695045963491	0.894368822710663
Merged-chr10-25281477-2	chr10	25280977	25281977	+	862.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	17686.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.98953220080213	1.99544874151815	2.25180742715609	1.92720793951709	1.89768197062444	2.00617268130598	-1.14220641340998	0.23454078816148	1
Merged-chr4-138014326-4	chr4	138013831	138014831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16506.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	5.62229046372344	5.44092104810146	5.27383922592211	4.58229267072874	4.48545365691152	4.53649872840616	-2.04072130801591	2.16375542730195e-07	1.40328730783274e-05
Merged-chr10-121374817-4	chr10	121374311	121375311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	9721.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	8.53732293885509	8.60350317012969	8.24730535358613	8.36684517025133	8.84035032518999	8.03819670003249	-0.00999491970365494	0.971202014764494	0.993727127580947
Merged-chr13-45089259-1	chr13	45088759	45089759	+	564.0	f0_c57.idr	Intergenic	Intergenic	-87163.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.91945599964926	5.02570892976611	4.46754241211547	5.24615243928723	5.18547836161509	5.04407149277569	0.687946818608997	0.0962370254579216	0.413536318446298
Merged-chr18-39620062-4	chr18	39619567	39620567	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132822.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.51573816130785	5.37550233192226	5.35182785234014	5.31594685350312	5.88821722186598	5.38415692556125	0.291429245701323	0.426949669366365	0.793904265858508
Merged-chr15-81746054-2	chr15	81745554	81746554	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081016, intron 1 of 22)	intron (NM_001081016, intron 1 of 22)	1206.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	3.22930884160211	3.0350169978521	3.3488017615979	3.16643452633314	3.02693036640589	2.88958580827709	-0.748731996318307	0.274498597546764	0.671810361172288
Merged-chr4-47312911-3	chr4	47312414	47313414	+	907.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009928, exon 40 of 40)	3' UTR (NM_009928, exon 40 of 40)	-40308.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.51838973493853	4.74986262610492	4.37066400597204	4.20177757498688	4.24799165497709	4.20388517277958	-0.895385873127425	0.0491427642332759	0.281713477528241
Merged-chr4-59058150-1	chr4	59057650	59058650	+	650.0	f0_balb.idr	Intergenic	Intergenic	22994.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	2.94294491703307	3.24100317936972	3.34483517877154	3.03554881016675	2.85195338140937	2.90905824645683	-1.17584466186523	0.0958907859097358	0.412857317291591
Merged-chr15-64306326-4	chr15	64305833	64306833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	6340.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.51935541143336	4.59968026949186	4.61201439214819	4.81150990531375	4.84171357910578	4.75838644185011	0.544071437384185	0.173401966149116	0.552199885159617
Merged-chr6-97489025-4	chr6	97488527	97489527	+	958.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-1207.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.83121905185555	6.93747177072189	6.82529678474626	6.95251583246344	7.31279861618971	6.85348277513711	0.305039296992221	0.251280851573471	0.648736961217461
Merged-chr10-39412271-4	chr10	39411760	39412760	+	981.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	42461.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.67654830948672	6.37684403926889	6.11260648791212	6.29652802204217	6.13077390547346	6.0813037331415	-0.406730436967553	0.182053127802268	0.564649559348511
Merged-chr7-80323418-2	chr7	80322918	80323918	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173445, intron 1 of 8)	intron (NM_173445, intron 1 of 8)	1036.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	5.42744607833509	5.71092087289834	4.90867708403985	5.2723620466442	5.28936075760295	4.93560671038682	-0.436024427305961	0.293218741162984	0.690196017357506
Merged-chr7-35030112-2	chr7	35029612	35030612	+	658.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26454.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.13644181900199	5.13023452845813	5.3092532676043	5.0769210094384	5.24138921690787	5.4300589415649	0.128439687328616	0.721067082112807	0.928382096777546
Merged-chr18-55282485-3	chr18	55281970	55282970	+	921.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-289879.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.36522298613275	2.42719986669977	2.35540855656199	2.42455145430055	2.29406302794353	2.61698442797642	0.391705362397308	0.636154110898332	1
Merged-chr13-59822711-4	chr13	59822217	59823217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 1 of 27)	CpG	430.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	8.58448506209646	8.65754508009482	8.46900428504802	8.4590056789202	8.71077340753325	8.52974012406766	-0.00175059835846578	0.993328830437769	0.998651348330892
Merged-chr13-13968976-4	chr13	13968475	13969475	+	733.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 2 of 12)	intron (NM_001362405, intron 2 of 12)	14301.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	2.44151949162586	2.44052711553129	2.56673231220188	2.50318681472502	2.45439202825052	2.63998394962348	0.297623755233914	0.704483915293282	1
Merged-chr10-80388314-2	chr10	80387814	80388814	+	569.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-663.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	5.92736048709103	6.13149423782873	6.01391447321957	5.95464996752725	6.09414965456828	5.93392301931693	-0.045327193743179	0.877666594290611	0.971699698312014
Merged-chr2-167920572-2	chr2	167920072	167921072	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11755.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.09378345277117	4.00982479353989	4.07046393128625	3.80290900870885	3.57549364395198	3.7417712456369	-1.12979510886572	0.0307914267953091	0.212251929482568
Merged-chr1-134066277-3	chr1	134065791	134066791	+	903.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	12864.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.53928236896199	6.63606360205913	6.58425650440158	6.32197110623171	6.47610020711897	6.65941943267963	-0.16151563853836	0.547423639676231	0.85926739735431
Merged-chr10-8882718-2	chr10	8882218	8883218	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	3352.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.58855095584622	7.7745707158974	7.5524010707047	7.43021270015261	7.80188082309145	7.57988180861749	-0.0392324502612581	0.870325972443076	0.970065609722504
Merged-chr1-88230816-2	chr1	88230316	88231316	+	966.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	intron (NM_001281466, intron 5 of 41)	3796.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.95660577745328	3.76819346851377	3.92306928819095	3.79419958743981	3.82751626454788	3.94339929319126	-0.095474362881326	0.852618850240725	0.965457443093371
Merged-chr8-72268519-4	chr8	72268017	72269017	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28499.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	6.97083957393807	7.0398798104666	6.84935293501628	5.62603043657261	5.41155412178065	5.80762234034283	-2.28101873184988	4.04219169858191e-15	1.12489192928295e-12
Merged-chr15-41861181-4	chr15	41860692	41861692	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_130885)	TTS (NM_130885)	8528.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	3.89273779427831	3.55030607739852	3.83010806382779	3.45651898111227	3.53932368640355	3.42066530934949	-1.00551715827828	0.083968946373327	0.383588449164643
Merged-chr7-110628484-2	chr7	110627984	110628984	+	865.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_009627, intron 2 of 3)	intron (NM_009627, intron 2 of 3)	827.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	3.95719265380473	3.86087148753177	4.05509516582491	4.1214250646846	4.06950148017472	4.2577944936359	0.562193405469696	0.248384212113843	0.645497954949362
Merged-chr13-62880438-3	chr13	62879963	62880963	+	657.727783	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019395, intron 1 of 6)	intron (NM_019395, intron 1 of 6)	7819.0	NM_019395	14121.0	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	2.81190489704798	3.21825943250403	2.98282359951776	3.17976027144762	2.94686761713298	3.34176721772359	0.621442623281862	0.384268839129865	0.765379389016507
Merged-chr9-65524153-4	chr9	65523636	65524636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55951.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.9906563325755	4.68228109239415	4.96772733536059	4.92259064435626	4.77353904884005	4.73357344712411	-0.155883659220454	0.696023736893252	0.919291538728398
Merged-chr7-102267476-8	chr7	102266952	102267952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009287)	promoter-TSS (NM_009287)	-372.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	7.51989039663509	7.66064023786076	7.43331247070326	7.84265208607723	8.15524239239895	7.55365016984769	0.488704195615434	0.0579345956530148	0.311039027156707
Merged-chr7-19119785-4	chr7	19119281	19120281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	-78.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	4.74326286703475	4.71447129475415	4.66744549351844	5.01636249245375	4.84137460049322	4.69320289542015	0.343619185443585	0.388625362612974	0.76847689280402
Merged-chr6-122598009-6	chr6	122597403	122598403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	4541.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	7.34842195051241	7.15423176182967	6.90577813580664	7.40042616177993	7.61079682962452	7.31881248099909	0.440890317895711	0.086407598255875	0.389395766663499
Merged-chr11-97989397-2	chr11	97988897	97989897	+	954.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NR_152188)	TTS (NR_152188)	-2951.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	4.02824918666071	3.77985090949807	4.21554056380134	4.23413493830832	4.12442283817819	4.148446801471	0.458305239076586	0.358088085078744	0.74454984718519
Merged-chr8-84661708-4	chr8	84661216	84662216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010499, exon 1 of 1)	3' UTR (NM_010499, exon 1 of 1)	1136.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	8.43536561213708	8.49480108693917	8.18058746425402	8.29622405216378	8.50110405013059	8.30752915777279	-0.0103689724270654	0.962296353737447	0.990814379307595
Merged-chr1-88698493-4	chr1	88697972	88698972	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	3719.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	5.84602571627285	5.87613978560451	6.03256174846075	5.76378140230056	5.72246640117921	5.93766147089384	-0.199103600047294	0.512903234543886	0.842184173595759
Merged-chr9-103209528-1	chr9	103209028	103210028	+	693.0	f1_c57bl6.idr	intron (NM_133977, intron 16 of 16)	intron (NM_133977, intron 16 of 16)	-7463.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	3.22536906737745	3.19714338506083	3.38396585058537	3.12269117682912	3.17744420224035	3.23519102900133	-0.371103057132348	0.553830261253255	0.862559584815648
Merged-chr7-44895948-7	chr7	44895445	44896445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027376)	promoter-TSS (NM_027376)	-134.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	6.53596421063893	5.94916090801758	6.19844546154118	6.24546951226579	6.15500128424855	6.01374354709908	-0.182598141352872	0.564552166197953	0.86648819110595
Merged-chr4-19895344-4	chr4	19894838	19895838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	27228.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	8.46863993618247	8.70480973972003	8.19161624948407	8.39871922198177	8.71504742133153	8.08970329136147	-0.0595899971585354	0.822527847286316	0.958113156622286
Merged-chr11-118171410-2	chr11	118170910	118171910	+	830.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	41332.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.16608584352058	3.19923794114786	3.76214106843099	3.07436219537805	2.99171079374177	3.17711399606912	-1.31461945787265	0.0568945831646356	0.30754101178118
Merged-chr4-139293750-3	chr4	139293190	139294190	+	800.255554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151463)	TTS (NR_151463)	17018.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	3.06223280358855	2.81971038548047	3.36559437684982	3.03879223313677	2.67294608823477	3.05787515185574	-0.746880124854525	0.32308267357406	0.716480453685946
Merged-chr12-84218427-4	chr12	84217906	84218906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	CpG	475.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	8.24015229632603	8.28794872143827	7.88936782799279	7.92498677949607	8.03234961410139	7.71911073726013	-0.358105245513147	0.132951987140778	0.487871386598783
Merged-chr14-73123552-2	chr14	73123052	73124052	+	742.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-18958.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	6.72954419798214	6.90226849561772	6.97726366278954	6.71638736709053	6.902175934727	6.59494826147769	-0.179994102774083	0.492966916629606	0.831208279358962
Merged-chr11-117121333-4	chr11	117120728	117121728	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	6056.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	5.90870631366208	5.85691515827822	5.84431647505257	5.51084345967964	5.89866290825153	5.75432315892256	-0.23894840681129	0.451657543800013	0.809233899859178
Merged-chr11-29715796-1	chr11	29715296	29716296	+	560.0	f0_balb.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-2767.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	4.10117119431174	4.36817418564298	4.30562909424512	4.27054828433839	4.29031822959424	4.37286432003904	0.124745186141136	0.785233062214894	0.947850129107983
Merged-chr6-92286639-3	chr6	92286157	92287157	+	801.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42007.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	2.32822588214504	2.18519556669778	2.39723642932264	2.6011919760182	2.66421673649441	2.60261806063696	2.16423418111261	0.0137262846687712	1
Merged-chr13-113493193-4	chr13	113492694	113493694	+	943.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	9650.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	2.63068613616185	2.79993440970462	2.95987604430177	2.61255356783531	2.51694784783169	2.67696831784371	-1.10492998386267	0.152057749365566	0.519991008104966
Merged-chr13-56522407-4	chr13	56521897	56522897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346732)	promoter-TSS (NM_001346732)	-75.0	NM_178674	213311.0	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	3.66868558564332	3.61727546486104	3.23987251591015	3.44094972438983	3.26057836506609	3.65306603315851	-0.265243788687329	0.674868280233381	0.911865018776908
Merged-chr19-16404573-4	chr19	16404069	16405069	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-31098.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	5.10794705930794	4.93597753014217	4.94831910162091	5.87436796199058	5.76499147862477	5.37386972045313	1.36499286315724	0.000163915817185607	0.00426355339680524
Merged-chr9-42908918-4	chr9	42908419	42909419	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	35452.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	4.96519248599164	4.47685022647296	4.63711047261107	4.53223976774762	4.63763678102833	4.74286037543677	-0.180014017794352	0.677910922065477	0.913273135651048
Merged-chr12-110852170-3	chr12	110851673	110852673	+	785.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1894.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	4.99242617990884	4.96225881235077	4.85973694285543	5.03343967798168	5.09457751840983	4.84790676028396	0.132956973707097	0.724974279057559	0.929475409375828
Merged-chr6-21955509-4	chr6	21955033	21956033	+	949.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx8|LINE|L1	5918.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	6.04623364742753	6.27402890684269	5.65934703003637	5.9077361123933	5.8519629622614	5.66456172081015	-0.374882792645538	0.260245514639606	0.657649400461384
Merged-chr7-141461945-5	chr7	141461457	141462457	+	865.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152220, exon 2 of 2)	non-coding (NR_152220, exon 2 of 2)	863.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	5.31417224835053	5.20381911652161	5.4223461376903	5.44816975383941	5.41252431980431	5.45600856082537	0.251799528412046	0.454222448606157	0.810104016757399
Merged-chr2-148585305-4	chr2	148584808	148585808	+	848.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-87307.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	3.50046464905269	3.28481243937895	3.45490301516337	3.32756493166993	3.35704965056259	3.36024531424966	-0.258939523494858	0.664969193116729	0.907721942545399
Merged-chr9-113770830-2	chr9	113770330	113771330	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114347, intron 4 of 39)	intron (NM_001114347, intron 4 of 39)	-22500.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.06434211848784	4.06318116753342	4.03958439449469	3.96487775099983	3.54706466706382	4.10789978991911	-0.519393408722538	0.338344969754555	0.728288914161912
Merged-chr1-54569237-3	chr1	54568689	54569689	+	639.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11505.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.61732776421778	3.40771702795296	3.4509620775047	3.49130332355413	3.28887278782335	3.41022496364312	-0.384426869607563	0.516985115256463	0.844460030891516
Merged-chr5-102001930-2	chr5	102001430	102002430	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	B3A|SINE|B2	67991.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.63456175307011	5.48140714921946	5.81098321632469	5.49383552764239	5.632896178669	5.72496623872683	-0.0413777411223564	0.899412368816461	0.97662115673637
Merged-chr10-4079392-3	chr10	4078899	4079899	+	953.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106324.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	6.30074648551286	6.77332652677004	6.68400410991454	5.77090435762159	5.83225352403359	5.9521260341796	-1.26220535628067	3.20401149760947e-05	0.00108860509878762
Merged-chr16-57528674-4	chr16	57528224	57529224	+	913.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-20518.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.50401563151294	5.51396520294734	5.58066603189721	4.9437481568994	4.93038793980285	5.42469004136494	-0.856212166249393	0.0200210350776601	0.161472355020058
Merged-chr11-99168198-4	chr11	99167700	99168700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13123.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	6.6122507413698	6.36241988099571	6.43495418512847	7.04683004073936	6.91699647653654	6.24534414073647	0.501357665483041	0.11415191547645	0.451234828318327
Merged-chr15-58075480-4	chr15	58074992	58075992	+	822.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009572, intron 1 of 3)	intron (NM_009572, intron 1 of 3)	1016.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	5.51192004084763	5.66675974232123	5.91660051994746	5.74795899046937	5.86690237131492	5.8117999150935	0.206896334328916	0.51772449523469	0.844729967743376
Merged-chr2-77918416-2	chr2	77917916	77918916	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 12 of 20)	intron (NM_030560, intron 12 of 20)	27940.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	3.79942234749442	3.87877122803748	3.90066335097477	3.76420327545393	3.57844343900841	3.7175546311663	-0.574785170880715	0.278804249633609	0.676190705421913
Merged-chr4-119663627-3	chr4	119663133	119664133	+	960.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4688.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	2.94648512937185	2.86245695919736	2.9979405233979	2.60032604218556	2.49083762310953	2.57752389180918	-2.24946864031402	0.00540381718685377	0.0646407159982358
Merged-chr12-91845568-2	chr12	91845068	91846068	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039089, intron 1 of 20)	intron (NM_001039089, intron 1 of 20)	3589.0	NM_001039089	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	3.96621887419976	3.88986851590353	3.83500671963551	3.84124059494234	3.81859112357328	3.9542448238099	-0.104204846601425	0.837599185115491	0.962141375366527
Merged-chr6-86527177-3	chr6	86526666	86527666	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-164.0	NR_037960	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	9.58264576950163	9.92409536234777	9.32911783536076	9.38648221168263	9.65906270999017	9.28817556678138	-0.245839288831729	0.311618496766541	0.706631105711982
Merged-chr10-26790282-2	chr10	26789782	26790782	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	17770.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.4573980314098	4.52863857578686	4.52552993952073	4.04497060254136	3.99196901471212	4.29928262496088	-1.07554285730063	0.0199851691341841	0.161308172792433
Merged-chr6-32539313-3	chr6	32538807	32539807	+	729.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	28166.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	2.54667715409734	2.23685581525474	2.29800354638622	2.52979201645505	2.33409070962217	2.6337115965021	0.806215574375541	0.351521109961292	1
Merged-chr4-117167445-4	chr4	117166943	117167943	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290662, intron 10 of 19)	intron (NM_001290662, intron 10 of 19)	-11311.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	2.95586447955302	2.66068494613841	3.04376633173453	2.88851779936182	2.97973508611305	2.68412102251744	-0.163596336365307	0.82958199709083	0.960125413857885
Merged-chr8-85080668-2	chr8	85080168	85081168	+	985.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	78.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	6.9346887663917	6.8276287607391	7.20292014558952	6.995608106079	7.12756177915564	7.07949269134238	0.123522373067884	0.62565844597085	0.892535111307477
Merged-chr16-4876247-2	chr16	4875747	4876747	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 2 of 2)	intron (NM_145359, intron 2 of 2)	3604.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	4.02800916776224	3.90803040654359	3.97775468013021	3.8829455308373	4.14133301093181	3.73218586322977	-0.0868633375434464	0.868517889582559	0.969652123135977
Merged-chr11-6547183-3	chr11	6546696	6547696	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190343, intron 1 of 8)	CpG	309.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	6.98482322777078	7.14573091037267	6.98329705653261	6.98026445764915	6.69049074441144	6.97344896350797	-0.24833096734138	0.32923901189388	0.721157199685846
Merged-chr11-118160638-2	chr11	118160138	118161138	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-31419.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.94491025634052	3.87272180087807	4.17791222794815	4.16941894323583	3.93110770223685	4.11045783986791	0.216608920530359	0.664901573838964	0.907721942545399
Merged-chr10-34206611-4	chr10	34206116	34207116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	935.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	7.52175197145608	7.64332991673659	7.5513411279474	7.40512182954743	7.48475248737657	7.41507800535245	-0.200615989818668	0.366405051563375	0.751450052511222
Merged-chr14-59440924-4	chr14	59440417	59441417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	-37.0	NM_001320721	239122.0	Mm.205022	NM_001081024	ENSMUSG00000071350	Setdb2	Clld8|Gm293|KMT1F	SET domain, bifurcated 2	protein-coding	7.52901023586993	7.88310810042752	7.61457302324516	7.75786040000487	7.85700036738591	7.69900434290255	0.126252086668576	0.589351979992915	0.876844702581037
Merged-chr1-120020632-4	chr1	120020149	120021149	+	968.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13669.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	6.02129771454183	6.05193569511746	5.79836490292099	5.86422916098649	5.86997518685659	5.83457227116572	-0.199508235314505	0.505813790963111	0.838177729332582
Merged-chr10-99460007-4	chr10	99459528	99460528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149143.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	7.23422253615597	7.26946325842786	7.19617698094733	7.02763405975365	7.20090020631694	7.09175492192937	-0.184613310756799	0.4312998720087	0.796811646575188
Merged-chr1-64933214-4	chr1	64932762	64933762	+	888.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	23562.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	3.12958128671076	3.17402717520636	3.14381682146776	3.08045458421282	2.90884259862134	2.91250206763856	-0.824694617341925	0.218901971968779	0.613128894826908
Merged-chr13-58066974-3	chr13	58066467	58067467	+	978.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35461.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	6.92692414080385	7.29667666794228	6.95416224018073	6.81844459760741	6.88508097011398	6.83845663337062	-0.348869447165039	0.178097711693832	0.559150073373596
Merged-chr6-54958137-4	chr6	54957622	54958622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	13539.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.59264237331235	5.54785530590339	5.64580385632356	5.69939536257362	6.01874555645261	6.04427766956924	0.609505033137461	0.0541942402626638	0.298952157503031
Merged-chr11-96775890-4	chr11	96775409	96776409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028965, intron 2 of 8)	intron (NM_028965, intron 2 of 8)	1646.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	6.44760249114711	6.53811816745945	6.63206561194159	6.58534951043204	6.87772223726038	6.60782030557928	0.268620264375483	0.316360840999912	0.71043512962299
Merged-chr18-77949734-4	chr18	77949233	77950233	+	725.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195633, intron 2 of 43)	intron (NM_001195633, intron 2 of 43)	11266.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	3.6870838643284	3.51770192431689	3.48785583862079	3.89303332772297	4.05251179066028	3.67723491762656	1.06291621711605	0.0583609422979898	0.312188832319585
Merged-chr15-51083814-4	chr15	51083314	51084314	+	966.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-193773.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.49720561132934	3.40800418479549	3.42430982575194	3.34904397142434	3.28696164420729	3.49497804218047	-0.27324096869732	0.643913486267099	0.89999541650119
Merged-chr4-48591064-4	chr4	48590571	48591571	+	919.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021436, intron 1 of 9)	Tigger13a|DNA|TcMar-Tigger	5897.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	3.47009172833784	3.35250232158924	3.70406760092719	3.58279218834521	3.39000215620738	3.91259325913088	0.447102947964979	0.460422316204885	0.814499959324264
Merged-chr11-20916260-2	chr11	20915760	20916760	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85152.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.12443808252414	4.29289433630988	4.32807390032318	3.96834465480497	3.8442752376116	4.2238283532487	-0.685433345097606	0.164870124866181	0.539575548267644
Merged-chr7-63935746-2	chr7	63935198	63936198	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	3217.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.01409574615186	4.84715692887003	5.06286107096282	4.96387513592732	4.78420017279492	5.36833416593878	0.158562214686104	0.695229859797697	0.919230570201314
Merged-chr8-105827341-4	chr8	105826873	105827873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-23.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	6.75323612639376	7.10699122000961	6.5138486103346	7.03688766149233	7.12514150591901	6.81494275673204	0.273174680022847	0.340913498341789	0.730599337545402
Merged-chr11-54524740-2	chr11	54524240	54525240	+	890.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	L2a|LINE|L2	1895.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.41082800216373	3.2709668480333	3.41688375044818	3.45905111326307	3.41314789813182	3.43269922525907	0.265864813974705	0.651330406144995	0.902785150139012
Merged-chr11-120555062-4	chr11	120554557	120555557	+	903.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3925.0	NM_026814	68701.0	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	4.8840910133268	4.47878180794989	4.35400656419734	4.11345817118382	4.17875474371058	4.13315969739906	-1.19588043111355	0.0121764584205395	0.115374247402255
Merged-chr14-70792826-3	chr14	70792326	70793326	+	803.283325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18445.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	3.2711693531448	3.55316601952978	3.3507584069142	3.0932215375302	2.95677588140973	3.25350938980618	-1.28400779900697	0.0514427508003403	0.289206589557218
Merged-chr2-27689125-3	chr2	27688730	27689730	+	796.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	12029.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.95539233619448	7.25295603685016	7.06343905542259	6.92500476180395	7.16609558469461	7.06934533794077	-0.0593255945412077	0.813741571318281	0.955940138311315
Merged-chr16-43432232-3	chr16	43431724	43432724	+	782.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-12028.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.96595913850942	3.95310883448159	4.00526555070321	3.67036326231771	3.93207673225009	3.97876558149113	-0.327877111563541	0.524105808858055	0.848572432574534
Merged-chr19-8821154-2	chr19	8820654	8821654	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081196, intron 1 of 13)	intron (NM_001081196, intron 1 of 13)	1753.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	5.81860061023437	5.82988265297475	6.05461303375448	5.93114756271576	5.78414173526167	6.31047322719551	0.203265829064346	0.530113743757221	0.851070276054813
Merged-chr1-192136713-4	chr1	192136221	192137221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033536)	promoter-TSS (NR_033536)	-177.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	5.50780899621668	5.63771601078129	5.80564789284668	5.36242497449746	5.25118702861884	5.32296600124244	-0.650449306465104	0.052283499396868	0.292326664279975
Merged-chr16-11439668-4	chr16	11439172	11440172	+	950.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	34024.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.93193775646283	3.9727089322783	3.92776797190037	3.92833135640163	4.01034266925125	4.31237507001034	0.41390051685479	0.409962517953233	0.78304118380362
Merged-chr2-60851406-4	chr2	60850908	60851908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	30030.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.3464807976974	7.09965979447914	7.00493153315651	7.12753372995682	7.45799741027937	7.18095793843707	0.159158708824782	0.536890542171557	0.854215768737235
Merged-chr2-92183259-6	chr2	92182757	92183757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-925.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	6.30771883609949	5.83019123427435	6.1590122698746	6.0531744117329	5.71570051235629	5.95570187957568	-0.351343522999639	0.277033583595126	0.674343034039447
Merged-chr2-122132268-4	chr2	122131696	122132696	+	908.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	RLTR20C1_MM|LTR|ERVK	-13810.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	3.62485359941464	3.90643985983578	4.02129508608165	3.71210710991335	3.43720115103019	3.8082600232118	-0.670583010137248	0.239023464128136	0.635684610322943
Merged-chr7-28796818-4	chr7	28796309	28797309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177158, exon 9 of 12)	exon (NM_177158, exon 9 of 12)	7840.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	6.23981268919732	6.43467683588177	6.61255964348356	6.54553767688443	6.59119774712409	6.97056996158911	0.443947922260877	0.124940093982431	0.472911583500439
Merged-chr11-9334999-4	chr11	9334494	9335494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178259, intron 26 of 61)	intron (NM_178259, intron 26 of 61)	143052.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	6.62589787873038	6.77504188328196	5.98788236759131	6.75885835440014	7.43199266889672	6.50713182772679	0.710395505110867	0.0579366633244616	0.311039027156707
Merged-chr11-100714736-3	chr11	100714246	100715246	+	884.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029307)	TTS (NM_029307)	896.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	4.45696053948627	4.44862515949138	4.62162960393027	4.69686936192687	4.71969386202604	4.52283705087455	0.370447614253751	0.375910195746479	0.758951282467405
Merged-chr8-84070379-4	chr8	84069866	84070866	+	998.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3530.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	5.55729383843015	5.78174862677817	5.89573135887832	5.46882428892936	5.39971106758389	5.61122941598041	-0.481053159829689	0.143995985936081	0.506588698903881
Merged-chr18-73572472-4	chr18	73571975	73572975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039214)	promoter-TSS (NM_001039214)	-230.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	7.93736045179684	7.83877072728257	7.67969287851806	7.78587769702977	7.66031207533502	7.78882686629585	-0.121406434636051	0.584430844764368	0.874568023559098
Merged-chr9-120567175-2	chr9	120566675	120567675	+	576.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178676, exon 11 of 11)	3' UTR (NM_178676, exon 11 of 11)	-4342.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	2.73984821500808	2.49317364280462	2.53639881671835	2.80406946358231	2.63858652600675	3.03901403076586	1.25650427067395	0.113991244364748	0.450886303830234
Merged-chr10-63387288-2	chr10	63386788	63387788	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013888, intron 1 of 4)	intron (NM_013888, intron 1 of 4)	725.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	5.70573985637829	5.89300171627724	5.76831950413149	5.6025197268083	5.85321927390764	5.61492177885431	-0.160164506623587	0.614426038610739	0.887435546271868
Merged-chr15-98145658-4	chr15	98145156	98146156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170710)	promoter-TSS (NM_001170710)	46.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	6.61602703589621	6.824759577673	6.83119365768168	6.98540036613274	6.88042821188601	6.73639277161494	0.182362097048728	0.477172575815637	0.823186444058601
Merged-chr18-34932069-4	chr18	34931584	34932584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144866)	promoter-TSS (NM_144866)	-81.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	8.70957215643431	8.72702958204267	8.43256944143424	8.54457139130395	8.67968444859001	8.48223262352706	-0.083068996500903	0.697562559003226	0.920011490392658
Merged-chr14-31440906-4	chr14	31440384	31441384	+	922.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4784.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.72606752083472	3.58481803349448	3.59272823334027	3.50909114720892	3.54930687347442	3.81510322391391	-0.0483609672032666	0.931398699152861	0.984877393921712
Merged-chr12-26425272-3	chr12	26424823	26425823	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10061.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	4.58851199428008	5.01102108318374	4.64107756914278	3.72750104309544	3.56370483821545	3.93101523122544	-3.12234187897711	1.42055663981819e-08	1.23771389409415e-06
Merged-chr19-60947730-3	chr19	60947231	60948231	+	796.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	ORR1B2|LTR|ERVL-MaLR	57982.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	5.83226916083625	5.71962582505243	6.19453016675882	5.49597839530999	5.84687676960806	6.36161582459621	0.033949950417385	0.927943480581983	0.983749507397008
Merged-chr6-71950367-1	chr6	71949867	71950867	+	763.0	f0_balb.idr	intron (NM_009088, intron 16 of 33)	intron (NM_009088, intron 16 of 33)	41314.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	4.27891735602273	4.32176995138434	4.59962829365158	4.35684980446065	4.51730815074236	4.46539638706607	0.135896492571911	0.759898066577512	0.940572672765463
Merged-chr1-191091563-2	chr1	191091071	191092071	+	687.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6843.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.63842098383191	6.00081490913346	5.89698533884143	5.96221627170232	6.3131062844215	5.93426503157463	0.415192809133984	0.196742288679457	0.584745404930713
Merged-chr13-67729134-4	chr13	67728643	67729643	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145622)	promoter-TSS (NM_145622)	30.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	5.84192148826744	6.29478772914317	6.43373892624894	6.86046045947545	6.75565142953944	6.07462107321046	0.660040058816889	0.0585896609955984	0.313029954547435
Merged-chr8-90909411-5	chr8	90908839	90909839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	CpG	-22910.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	7.25969106708271	7.1632498717424	7.14725350066609	7.39465428751553	7.0791085185606	7.36595439131479	0.133143943780156	0.585573416414818	0.875050597792612
Merged-chr5-103680525-4	chr5	103680025	103681025	+	932.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR41|LTR|ERVL	-24793.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	2.70644640913062	2.32046730914396	2.502904519974	2.70475851434678	2.45698928418942	2.82797212618974	0.826062823111858	0.327337511675172	1
Merged-chr11-17258060-4	chr11	17257555	17258555	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330649, intron 1 of 4)	ID_B1|SINE|B4	367.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	8.30470487098402	8.79374322875715	8.14448592617883	8.28097011429709	8.62946563178875	8.29359529331549	-0.0504392128364329	0.84920306514482	0.964608802978311
Merged-chr2-59241592-2	chr2	59241092	59242092	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	80742.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	5.05099069701814	4.69014583748121	4.59195681982602	4.87220464765558	4.60425336202146	4.96901020415296	0.0311015389806281	0.941950755319701	0.987092317509512
Merged-chr6-21959116-4	chr6	21958649	21959649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9534.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	5.72497494455282	5.76311854830105	5.86490570482061	5.88053076638382	5.87249438567675	5.92605634092646	0.197577115483697	0.508853466897928	0.840076174552941
Merged-chr2-18677178-2	chr2	18676658	18677658	+	1000.0	f0_balb.idr|f0_c57.idr	TTS (NM_147778)	TTS (NM_147778)	140.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	7.07495760830273	6.49765334212786	6.39089575925105	7.08434233530657	6.2769407836789	6.79749654416526	0.0979013777078199	0.780842113612674	0.946078518476608
Merged-chr9-124056558-4	chr9	124056004	124057004	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34533.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	5.8780385479625	5.58116732209013	6.13514918447965	5.6945367854805	6.01043063751227	5.89045341699248	0.00411794131154284	0.990181630176501	0.997742104481084
Merged-chr1-138995427-2	chr1	138994927	138995927	+	718.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	17770.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	3.99826929136839	4.07231756351309	3.99743113812088	4.23241390702377	3.69653370196202	4.25017394043421	0.153634016773267	0.772829232293071	0.943907331317126
Merged-chr11-115648043-2	chr11	115647543	115648543	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 4 of 5)	intron (NM_001313936, intron 4 of 5)	-19748.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.28728398560272	3.87509323386516	4.52858962000289	4.31161754026386	4.07961746525316	4.43818836850567	0.0769044042236054	0.881170703841769	0.97262624933271
Merged-chr5-9087444-3	chr5	9086954	9087954	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13283.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	5.68140350449048	5.57499838730017	5.97577141802037	6.02702341879667	5.97513620854495	6.0364243054037	0.478627359385249	0.12324633867095	0.46968404085978
Merged-chr9-21436315-6	chr9	21435852	21436852	+	923.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	11444.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	4.69062156628753	5.20607755428934	5.0427896399684	5.0379759528327	4.8906064182387	4.96708695947132	-0.074828170754446	0.851932413858856	0.96531854415899
Merged-chr4-70536059-4	chr4	70535540	70536540	+	933.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1112.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	3.34748224418804	3.14447073764848	3.48604118425464	3.21775887695136	3.35766678613831	3.55554286215949	0.202723087712831	0.746184969351393	0.936287949695029
Merged-chr4-139609178-3	chr4	139608671	139609671	+	705.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-13723.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	2.61708702999604	2.47554488460797	2.79904462530359	2.6579639355933	2.52829003178593	2.7530456536735	0.074948137658539	0.922936413335151	1
Merged-chr14-25413744-4	chr14	25413255	25414255	+	905.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45430.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.69108200937149	3.50825158238151	3.50785485822603	3.68225094151779	3.43186199089995	3.28583749643901	-0.340595041630233	0.571307543804818	0.869428183241799
Merged-chr10-70215018-4	chr10	70214502	70215502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	10338.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	6.30140252756061	6.34948158754245	6.0514119738832	6.53670870489739	6.63710478433815	6.22698943659434	0.392091647494019	0.179984415004432	0.561569207808323
Merged-chr11-70615852-2	chr11	70615388	70616388	+	869.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-6.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	3.47622864561474	3.43741689367279	3.31661212909319	3.27064795096714	3.50418213237435	3.50028885846931	0.0556284660949836	0.925978939920303	0.983305773102619
Merged-chr1-64690975-6	chr1	64690619	64691619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038009)	promoter-TSS (NR_038009)	-226.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	5.09665335723985	4.89760716703096	5.23447806892667	5.45314325573445	5.02253890649783	5.13529255606566	0.289524708877031	0.45027035520316	0.808244958990181
Merged-chr8-71528811-3	chr8	71528324	71529324	+	881.4722289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8613.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	3.58726836514959	3.41627070104373	3.78312335733643	4.73456307828492	4.66451011854422	4.72001864176655	3.5446009932604	5.54790197190379e-10	6.31504551680124e-08
Merged-chr13-98959732-2	chr13	98959225	98960225	+	565.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	24840.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.23985565676694	2.97642184373459	3.29986850740242	3.88465220676228	4.10916849905096	4.574912395939	4.19661626163643	7.86444001891168e-08	5.76042539695073e-06
Merged-chr2-140794251-8	chr2	140793757	140794757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	RMER17C2|LTR|ERVK	-122781.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.54137400074297	3.20516914290898	3.66906737904594	3.41918391682922	3.1159605038719	3.43054233311925	-0.597600091481636	0.352554246142636	0.740194084833795
Merged-chr14-21757008-1	chr14	21756508	21757508	+	571.0	f0_c57.idr	intron (NM_001359953, intron 1 of 5)	B4A|SINE|B4	5456.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	5.40272195472309	4.90570750274747	5.4903145708417	6.34019937666544	6.19393795762977	6.1671391289406	1.73830995632877	4.99194868974569e-07	2.92720272428724e-05
Merged-chr11-65778063-1	chr11	65777563	65778563	+	630.0	f1_c57bl6.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	10296.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	2.86618674292863	2.94100978830552	2.9422362055448	2.95581396921019	2.99973066845708	3.01454964910184	0.351932864905334	0.601828585341947	0.882147380255146
Merged-chr3-100685685-8	chr3	100685160	100686160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010763)	promoter-TSS (NM_010763)	-187.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	7.4742839213845	6.88844414262281	7.05437735616247	7.39453932279094	6.65093850471165	7.03264450574852	-0.158560326454444	0.618226611342875	0.88921047052262
Merged-chr2-161108580-4	chr2	161108100	161109100	+	961.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 1 of 35)	CpG	486.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	6.34413524359221	6.09658857061787	6.17147948340869	6.28608103532691	5.61780561180592	5.93944345486755	-0.402258682359251	0.227237649078935	0.622375640490653
Merged-chr4-129542782-4	chr4	129542296	129543296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008228)	promoter-TSS (NM_008228)	-150.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	6.53785410065104	6.50384522946852	6.54467166823043	6.35604945041401	6.29275379271129	6.15819239002974	-0.410094867172854	0.126502398958769	0.475429612130137
Merged-chr9-118872059-2	chr9	118871543	118872543	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 11 of 13)	intron (NM_001113514, intron 11 of 13)	-54493.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.64989971068669	2.44343142516663	2.84048745208591	2.4423336595289	2.40232574457465	2.55381206319512	-1.09721142152049	0.179150732679413	1
Merged-chr5-142910354-4	chr5	142909825	142910825	+	898.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3571.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.80175192197551	6.85330423903786	7.37214496361285	7.12581759053012	7.53035209609375	7.36712724580844	0.492535106277452	0.084037178289203	0.383661081936741
Merged-chr16-10987582-3	chr16	10987093	10988093	+	722.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	5528.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.35536231832962	5.37593889786454	5.71238414118725	5.52127329147111	5.6629591554679	5.53543157134324	0.190874278104656	0.571244241567231	0.869428183241799
Merged-chr2-52960918-4	chr2	52960426	52961426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103058.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.45923546076417	5.67244873012373	5.8880618444	5.4208256518706	5.49404834969756	5.68558338784508	-0.268873176788026	0.426527131908274	0.793840707522572
Merged-chr15-6574722-4	chr15	6574127	6575127	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5220.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.07978074393871	5.52862932954954	5.41489124380196	5.80200731461523	5.69780367540848	5.67667357663466	0.702548812634879	0.0415244916623291	0.254824832379901
Merged-chr6-116682447-4	chr6	116681943	116682943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8607.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.03180258847047	6.98423268745106	7.00557235490529	6.87051373516213	7.04048129437266	7.18790481695459	0.0425243890452964	0.862810824656833	0.96809238390547
Merged-chr12-76533653-5	chr12	76533229	76534229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039597)	promoter-TSS (NR_039597)	169.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	7.1994986307219	7.44578217624052	7.46714667368537	7.52260222543341	7.45206649960554	7.46324030378427	0.156071211246433	0.502233879898833	0.836366262631032
Merged-chr2-163929743-4	chr2	163929233	163930233	+	942.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11050.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	6.96735891973602	6.82291483236039	6.69222888574178	6.4183022501091	6.18650998326661	6.09221924635758	-0.953153980034955	0.0005767800880815	0.0117571576602365
Merged-chr14-78536968-4	chr14	78536481	78537481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164503)	promoter-TSS (NM_001164503)	-121.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	6.45983988325987	6.42998949824973	6.22188787851224	6.33445908595373	5.99319962121737	6.2616104017574	-0.306327358698207	0.290606000066559	0.688463987220644
Merged-chr3-95665147-13	chr3	95664715	95665715	+	908.487183	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6494.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.64016047319008	4.98393107598249	5.57760705600738	5.70245664393043	5.28588025311999	5.88366145328947	0.394043278081037	0.326184925296733	0.718556399216867
Merged-chr4-136029572-3	chr4	136029064	136030064	+	996.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7915.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	4.92585996307699	4.95408553758428	4.87885186104366	4.48950026459549	4.62624392839056	4.3073892212692	-1.00172519379213	0.0175292348134057	0.147898252925762
Merged-chr5-92506429-6	chr5	92505965	92506965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	-808.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	7.43768645777803	7.529386496575	7.58010746783861	7.51231948428322	7.80308433356269	7.50952773692072	0.157771311768073	0.500405713623712	0.834978949366358
Merged-chr7-118766228-4	chr7	118765712	118766712	+	922.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 8 of 30)	intron (NM_027815, intron 8 of 30)	25941.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	2.96812961315422	3.05850862099464	3.15365154051812	3.03691526997384	2.86579828231673	2.93158358523189	-0.532771755367681	0.432225050181763	0.797270167804312
Merged-chr2-166019508-2	chr2	166019008	166020008	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	MT2C_Mm|LTR|ERVL	26871.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	5.71233655519006	5.7984202052035	5.85037147661506	5.85181720387101	5.95929614828076	5.67806642049497	0.108637670696077	0.724952756368048	0.929475409375828
Merged-chr6-97442813-4	chr6	97442319	97443319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B1_Mur1|SINE|Alu	16467.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.5442060980811	7.43279422429909	7.32604108840732	7.51522142171431	7.70106119864066	7.33740225545355	0.137010302378101	0.56889429456972	0.868767898077656
Merged-chr6-50836132-3	chr6	50835641	50836641	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60026.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	3.13446973345518	3.19667235679235	3.36308879668033	3.79720050072042	3.51322476948615	3.89662353281954	1.94966311461354	0.00174086783285169	0.0277611186105174
Merged-chr13-24802543-4	chr13	24802072	24803072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	915.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	7.28044803024286	7.66259618523347	7.56008415210149	7.71590586826123	7.79462650250971	7.50747988158544	0.251366702712028	0.304302057364762	0.70084663420418
Merged-chr9-40799400-2	chr9	40798922	40799922	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.25209537608872	7.25994070035056	7.29739343606622	7.18479227665574	7.63224005010245	7.34352197746927	0.206375530558925	0.407907312064934	0.781926100186554
Merged-chr7-19342809-4	chr7	19342317	19343317	+	896.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	3.1189479667457	2.85062069238786	2.9525190076532	3.31953176662929	3.32850231798371	3.15185565662102	1.2875168960207	0.0581764477146232	0.311662751830953
Merged-chr10-7232254-2	chr10	7231754	7232754	+	672.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-20017.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.5777562193185	3.38520102801362	3.58562356165029	3.11989601049213	3.21055542434053	3.60483230550027	-0.752372991741655	0.237477627570751	0.63392549144389
Merged-chr9-122285550-3	chr9	122285017	122286017	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271873, intron 1 of 12)	intron (NM_001271873, intron 1 of 12)	8906.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	3.53195495447051	3.46723022788162	3.54378282916893	3.49074734050879	3.26898222533622	3.6650412876371	-0.139722186043592	0.813575941844335	0.955940138311315
Merged-chr11-3163141-3	chr11	3162668	3163668	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30295.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.71443994516248	6.79919968246681	6.93424634786894	5.01451625783001	4.85509584369893	7.24931684729439	-0.82517389526023	0.52147617923422	0.847076250198493
Merged-chr9-65575992-4	chr9	65575492	65576492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	4095.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.11827879328235	6.77354308283708	7.01917068458903	6.86113528964862	6.7973115398	6.92896654867877	-0.179962387903721	0.482749982716953	0.825764257746495
Merged-chr2-136680013-1	chr2	136679513	136680513	+	875.25	f0_balb.idr	Intergenic	Intergenic	-33437.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	3.52046842431276	3.7706906543121	3.47093156000545	2.94926907616311	2.8627679241111	3.00252412659812	-3.22956275365433	2.41371780016953e-05	0.000857560336108055
Merged-chr5-105506630-3	chr5	105506135	105507135	+	866.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-12836.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	5.0708552292466	4.90643583892647	4.80045649247422	3.6697696177657	3.53037480243251	3.98444039403912	-3.77012490532536	6.77343552563437e-11	9.31576897879314e-09
Merged-chr17-57400993-2	chr17	57400493	57401493	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	L1VL2|LINE|L1	42307.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	3.8019032716774	3.84013665325487	4.03448906653292	4.16407131994602	3.94292868127244	4.36193960597512	0.793600884339809	0.12019648390576	0.463646054092553
Merged-chr1-34484634-4	chr1	34484133	34485133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13779.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	7.09670488481618	7.09016272121986	6.69000477453345	7.25980522816397	7.83859323183863	7.24190957771704	0.755379563048068	0.0104043692482534	0.103296355614923
Merged-chr11-96964818-2	chr11	96964318	96965318	+	808.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003293, exon 6 of 6)	non-coding (NR_003293, exon 6 of 6)	12870.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	3.56223629865401	3.41622426036031	3.89491617702072	3.69756799774133	3.26507452704661	3.6246623021715	-0.329782408735179	0.593146533079118	0.878410931874355
Merged-chr11-49076509-4	chr11	49076011	49077011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-76.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	6.9074246343346	6.82800696647557	6.59832339926558	7.16551302365587	7.08186512784905	7.20344431860058	0.541505060280393	0.030947547197503	0.212924046172824
Merged-chr1-182959922-2	chr1	182959422	182960422	+	891.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	5134.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.6988687912031	5.19542728698429	5.11956679159722	5.11813988297144	5.0712638988224	4.79495377349791	-0.740463847718475	0.0659287982815455	0.335133694630755
Merged-chr1-191851658-2	chr1	191851158	191852158	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30185.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	3.90422384529303	3.85507564034361	3.86930118795242	4.06978629011625	3.80929880726697	4.08264936161665	0.335853828519731	0.509943160582452	0.840623252721494
Merged-chr1-91455134-2	chr1	91454629	91455629	+	714.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	4199.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	4.59904594164129	4.43113658486304	4.38980834007918	5.0461182970548	4.20888727845942	4.63215618845918	0.470262419306742	0.337542233909325	0.727414835127997
Merged-chr7-80172793-3	chr7	80172290	80173290	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-14051.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	3.79653830626724	3.75218795797693	3.69843164441585	3.94772861990264	3.84863208433684	4.01857264882298	0.582047045492065	0.260255724666385	0.657649400461384
Merged-chr14-36316881-3	chr14	36316382	36317382	+	697.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	221917.0	NM_175008	218921.0	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	2.44455306063722	2.27461932818249	2.3301916847813	2.40025211708837	2.32799082850251	2.53324401721001	0.423696836961233	0.608718822911589	1
Merged-chr5-142938557-3	chr5	142938064	142939064	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21791.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	2.77108388104398	2.98472070757996	2.90519247794327	2.66990521480695	2.58645908112592	3.09101617120644	-0.466531243412317	0.545558101952181	0.858209810368924
Merged-chr2-30965785-4	chr2	30965281	30966281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144884, intron 2 of 4)	URR1A|DNA|hAT-Charlie	2137.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	7.66353074326312	7.67890139979972	7.42258309672098	7.71827335495465	7.95528810219745	7.53263829386566	0.226011032312329	0.354462825709714	0.74162462962729
Merged-chr19-34514896-2	chr19	34514396	34515396	+	567.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	Lx8|LINE|L1	12578.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.7423416707191	6.82333495260506	6.79192516257314	6.70612793209676	6.76344032508677	6.66117799159138	-0.11215818192838	0.652185923052491	0.902896807825606
Merged-chr9-14769227-6	chr9	14768710	14769710	+	896.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029306, intron 1 of 3)	intron (NM_029306, intron 1 of 3)	1820.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	3.55285185889323	3.60671619864468	3.48412727180512	3.2626497491877	3.11844969210128	3.08077991712954	-1.61139544112411	0.0113524766631779	0.109994215414732
Merged-chr3-97735858-2	chr3	97735358	97736358	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	32156.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.07731372195112	4.02935200975196	4.03036567488855	3.60386407679216	3.51230613702009	3.69916956266289	-1.48128090010257	0.00559710377583462	0.066371867562564
Merged-chr11-86473855-2	chr11	86473355	86474355	+	920.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10802.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	3.49312011135868	3.11967277501489	3.13812571529387	3.43357989913268	3.16379178086869	3.27235157360722	0.105744573816106	0.871714910241093	0.970250220039897
Merged-chr10-37262280-2	chr10	37261780	37262780	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28B|LTR|ERVL	-123354.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.93827548836045	4.89324490999275	5.02568050516344	4.50376941393873	4.90501785774071	4.7253693182707	-0.491774968812055	0.227261628585319	0.622377314098514
Merged-chr16-32324029-9	chr16	32323582	32324582	+	862.5277710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8170.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	3.50810646814741	3.54629287301277	3.77514030946312	3.48287139483386	3.27011580563062	3.64832002188478	-0.515068502483782	0.386223720283808	0.766990532634251
Merged-chr10-75675846-4	chr10	75675345	75676345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31837.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	6.48758335718117	6.83279156382605	6.40911129971952	6.26578949390642	6.55562992439446	6.41165086235628	-0.28532473644169	0.324779937917003	0.71771941343845
Merged-chr7-19508563-6	chr7	19508049	19509049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177692)	promoter-TSS (NM_177692)	-121.0	NR_138583	67091.0	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	7.36941373256978	7.85103186295266	7.55537262867175	7.98464974763739	8.06386495291589	7.67016507682019	0.44782733687387	0.0819598834235156	0.378718446338826
Merged-chr1-87652396-2	chr1	87651848	87652848	+	697.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	RLTR11A2|LTR|ERVK	32036.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.95451062211695	6.865295285713	7.08751423205534	7.0782823532978	7.2432352618217	7.39213246020324	0.416491385752653	0.0928748171396857	0.406091843644717
Merged-chr13-20128947-2	chr13	20128447	20129447	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	38440.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.66236094628307	4.79629467993101	5.03614252673979	4.90045316767695	4.45815722647728	5.22178449626777	0.115624040218734	0.797587309873163	0.951799370596145
Merged-chr17-3115753-4	chr17	3115247	3116247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 1 of 19)	intron (NM_134123, intron 1 of 19)	775.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	7.49942246160525	7.62294139682264	7.16499226972797	7.44654897780098	7.11668081284758	7.28367008991492	-0.243735402452934	0.346014366943594	0.734487066881322
Merged-chr15-87074576-8	chr15	87074096	87075096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-469703.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	6.93197775319667	7.15570641247839	6.76275914729832	6.71953362525064	6.81742908891515	6.82144284304766	-0.28162759921785	0.278256318442309	0.675555045695919
Merged-chr9-121697567-2	chr9	121697067	121698067	+	781.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164562, intron 1 of 6)	intron (NM_001164562, intron 1 of 6)	7462.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	3.90560482241276	3.27444262286376	3.37243212882476	3.44901076693053	3.38839857772506	3.55870463469253	-0.324822597536685	0.611616109240789	0.886202416377889
Merged-chr18-38250378-4	chr18	38249970	38250970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015475)	promoter-TSS (NR_015475)	95.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	6.67664384150234	7.05787238690916	7.12326598423833	6.91943121795674	7.00554130876609	7.40956624257813	0.242044362471594	0.395091831707491	0.772579826044138
Merged-chr17-71298253-2	chr17	71297753	71298753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	Lx5b|LINE|L1	12758.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	2.46962794904923	2.46488826389054	2.61933148487269	2.4471591653818	2.41901027151788	2.56947328631093	-0.240323212066919	0.760629441278306	1
Merged-chr17-71186866-3	chr17	71186368	71187368	+	855.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	PB1D7|SINE|Alu	2890.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.91911241247032	4.1113329257321	3.77869395460674	3.77655718077941	3.95568744180098	4.18752569295901	0.0827618190122038	0.875594427220204	0.971054644903929
Merged-chr2-91727853-2	chr2	91727353	91728353	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2285.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	4.91688911172568	5.11895837850005	5.21900580971639	5.37336647399942	5.47640645890722	5.2506804816179	0.595663739517951	0.096058492633077	0.413237258557185
Merged-chr17-46327495-2	chr17	46326995	46327995	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347396, intron 1 of 19)	intron (NM_001347396, intron 1 of 19)	528.0	NM_001347396	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	6.43970632418317	6.4577701718655	6.35057481398909	6.31201230815359	6.39285715720665	6.71596071225779	0.0905717216626274	0.746421211997936	0.936300236930265
Merged-chr10-127535576-2	chr10	127535079	127536079	+	957.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1020.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.16399983131114	2.89026598930145	2.85459355532584	3.03377765642768	2.94112460811705	3.10964011024636	0.206202603325435	0.767052080278978	0.942573703853445
Merged-chr10-43758385-4	chr10	43757882	43758882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	12224.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	5.10314991395442	4.59950019532564	4.74987120373866	5.57173369926755	5.21649776613021	5.12494055708586	1.0061187834598	0.0146610251677478	0.130527988675151
Merged-chr5-66111323-2	chr5	66110823	66111823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-13144.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.55202260699771	6.65175928951279	6.1897824732607	6.51460146240234	6.5768255862083	6.2507859071604	-0.043968945202243	0.880942076319722	0.97262624933271
Merged-chr11-119676945-2	chr11	119676445	119677445	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74040.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	2.50177035316123	2.5529651445865	2.67599563708336	2.44433483724861	2.29460886311964	2.50197564726564	-1.02593404794788	0.209162339187969	1
Merged-chr7-102241844-4	chr7	102241350	102242350	+	802.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	8268.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.33404863573245	5.27417811979678	5.7666557596876	5.14670510085034	5.21894988206371	5.41783444461032	-0.402278376290151	0.274394865067944	0.671721462492876
Merged-chr1-65195678-3	chr1	65195196	65196196	+	720.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011086, exon 5 of 42)	exon (NM_011086, exon 5 of 42)	9011.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	3.83363608918755	3.74004021065999	3.79389084552804	4.01859807331195	3.95615273267094	4.06082863302375	0.683552513876456	0.176042549319539	0.556202477361034
Merged-chr13-24793078-2	chr13	24792578	24793578	+	662.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8579.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	5.3478765548329	4.97207557696068	5.76133693248407	5.14029121945966	5.0328661486417	5.55830401526622	-0.269282136947142	0.52054210797741	0.846557495906973
Merged-chr1-153482148-2	chr1	153481648	153482648	+	801.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007842, intron 3 of 27)	B2_Mm1t|SINE|B2	5512.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.19021178042848	3.60915640906527	3.77695066611234	3.82836171550291	3.75271708718235	3.84625744251303	0.894697918374686	0.142045209501681	0.503160148868563
Merged-chr19-3879143-2	chr19	3878621	3879621	+	657.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 3 of 11)	B2_Mm2|SINE|B2	26109.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	3.53853806319268	3.74258555924902	4.21839672696128	4.14766605648154	3.89094822494586	3.92418126656154	0.413557057786946	0.467837030675967	0.81815434317961
Merged-chr2-140195593-2	chr2	140195093	140196093	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027093, intron 8 of 10)	intron (NM_027093, intron 8 of 10)	24947.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	3.32551268090943	3.11975475164395	3.56413199726257	3.23798460937201	3.14429278930864	3.53390015696848	-0.131807879556096	0.839495188986161	0.962784121274377
Merged-chr17-3160864-4	chr17	3160360	3161360	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 4 of 19)	CT-rich|Low_complexity|Low_complexity	45888.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	5.41548956880699	5.75735552531057	5.59337367333444	5.31826203885525	5.3806771467967	4.88018838421352	-0.71906600062757	0.0561324520385565	0.30517275852494
Merged-chr14-122608504-4	chr14	122607994	122608994	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	74166.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	3.12391190368947	3.04371063403103	2.99239059491028	3.14415309293525	3.10123003893748	3.12552772379597	0.292458639819726	0.652749327029163	0.903005353518697
Merged-chr19-4855173-4	chr19	4854691	4855691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019861)	promoter-TSS (NM_019861)	62.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	5.57609043852496	5.60630242219021	5.93741725621236	5.68936015381832	5.58465112924581	5.57493962053312	-0.161221401646436	0.621894983912925	0.890881421072795
Merged-chr7-128320059-2	chr7	128319559	128320559	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21928.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	4.13647154033562	3.85180155951151	3.55647294504124	3.98069972201473	3.91555765693301	3.91042511654317	0.172021195838106	0.757250245136416	0.939819795914786
Merged-chr7-113688871-2	chr7	113688371	113689371	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77127.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	2.54027436448159	2.27511068842374	2.52287092367867	2.40141684058246	2.23994479734743	2.33904317193831	-0.797360066417924	0.348197241660155	1
Merged-chr11-113339908-3	chr11	113339401	113340401	+	957.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-130232.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	3.87778842861001	4.01637111442951	4.50812452508571	3.6575516897341	3.34090893109903	3.71516594837647	-1.88611939160708	0.00162989381085743	0.0263955243701489
Merged-chr13-21160227-4	chr13	21159633	21160633	+	749.583374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17078.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	3.24844969437448	3.39459121888564	3.15904137546228	3.34118082957798	3.27381005501231	3.34839189421205	0.171946882318034	0.780866987780417	0.946078518476608
Merged-chr4-95073520-2	chr4	95073020	95074020	+	704.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21298.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.67457432256431	2.71837824644192	2.5759452745521	2.68186939177985	2.58381491847658	2.77518620397208	0.0955155009949011	0.899030135524693	1
Merged-chr13-119488009-4	chr13	119487531	119488531	+	936.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039244)	promoter-TSS (NM_001039244)	-8.0	NM_001039244	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	4.82279486771402	4.55204528034819	4.72042730513155	4.76442117427739	4.58757511428071	4.96625472491117	0.158568387880595	0.703559280141743	0.922108924938678
Merged-chr6-124917316-4	chr6	124916815	124917815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	(CGGGG)n|Simple_repeat|Simple_repeat	452.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	6.98075248904459	6.58383407714303	6.51211916814267	6.87268929043162	6.43271596031552	6.55363820215261	-0.131671401430466	0.658739013427013	0.905061851148161
Merged-chr8-83749500-1	chr8	83749000	83750000	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-8189.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.84130467502775	9.00965269743293	8.39904790219072	8.45716411336344	9.0338514086324	8.21315005014961	-0.212611723111466	0.472886666794673	0.820550293768681
Merged-chr17-53568398-4	chr17	53567842	53568842	+	950.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	1371.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	5.60028553319412	5.68480001648054	5.98517383153414	5.96591276686499	6.13204905475306	6.02366211949493	0.514770966365984	0.0971185283233671	0.415523822100679
Merged-chr16-10452711-4	chr16	10452206	10453206	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5344.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.77493262617992	4.89732348619431	4.82939049419495	5.0426389576418	5.13511871813305	5.20740820797502	0.629883498817147	0.0909625465326511	0.40137941198965
Merged-chr7-139296778-4	chr7	139296276	139297276	+	887.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48294.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	5.17684640126238	5.2391193849487	5.45576212434903	4.9813723064195	4.93848523887985	5.2893077239379	-0.456890861765168	0.218440620320102	0.612646863138567
Merged-chr19-21914360-2	chr19	21913860	21914860	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136020.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.60111456032226	5.61723209682588	6.00095655585253	5.31758559210629	5.64694054959914	5.79254322282366	-0.268462741117354	0.442729608586618	0.803309923833629
Merged-chr3-60474375-3	chr3	60473903	60474903	+	797.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1573.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.86654486117901	7.42899511341137	6.92063144454561	7.58135839016121	7.720484566758	7.22429039022325	0.629457293022716	0.0303235535166238	0.210403789277121
Merged-chr10-43504525-4	chr10	43504028	43505028	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359600, intron 3 of 3)	intron (NM_001359600, intron 3 of 3)	11363.0	NM_001359600	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	3.71197364453248	3.42221431368068	3.7031108073402	3.45813872581893	3.16240584760655	3.56926358434455	-0.801011751135521	0.194239558741032	0.581403645992907
Merged-chr8-79059500-4	chr8	79058992	79059992	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	31055.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	4.87550989312789	5.18492083244034	5.04727596740411	4.24835582103258	4.17225591724476	4.37607052551672	-1.9209651494197	8.84672796949313e-06	0.000359608471365698
Merged-chr7-45801575-4	chr7	45801083	45802083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005511, intron 15 of 15)	intron (NM_001005511, intron 15 of 15)	12733.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	3.48797066465288	3.3966416421654	3.14237313547136	3.22354311328432	3.19953307241564	3.7049125518384	0.142015321231918	0.830660717693387	0.960367055687527
Merged-chr5-125465829-4	chr5	125465331	125466331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10042.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	4.0053789473242	3.71576177409427	3.92766812360286	4.1080966416691	3.85492739930658	4.04519183019863	0.351287519995341	0.4964751981482	0.833052561713032
Merged-chr5-77267228-4	chr5	77266732	77267732	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011263, intron 1 of 3)	intron (NM_011263, intron 1 of 3)	1738.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	5.43109171672162	5.73213823689792	5.77222581556597	5.81712624511836	5.64414296254027	5.7838892854265	0.178543193212089	0.582217847896555	0.873641756614307
Merged-chr5-136140172-4	chr5	136139686	136140686	+	978.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028070, exon 3 of 3)	exon (NM_028070, exon 3 of 3)	1405.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	5.14891217303547	4.87212115516554	5.28390507195125	4.62361192346057	4.79274594268315	5.65371698572091	-0.0171923751783723	0.971292900924581	0.993727127580947
Merged-chr3-138966496-4	chr3	138965998	138966998	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 4 of 13)	intron (NM_001356388, intron 4 of 13)	108703.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.52542731108498	3.59949270739088	3.48311208269944	3.22845717604592	3.47269854578547	3.60643697797892	-0.356448658699117	0.550118830722309	0.86061104953497
Merged-chr15-103249673-2	chr15	103249173	103250173	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302338, intron 2 of 2)	B1_Mus2|SINE|Alu	2003.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	4.08806547890688	4.00996879443068	3.79710233168743	4.15108265841196	4.20910934924152	4.62717080954819	1.00223443851135	0.0512554431802209	0.288513129875908
Merged-chr17-35125288-4	chr17	35124796	35125796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001128597)	TTS (NM_001128597)	-1106.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	5.39511253089864	5.52092079308249	5.54647430191476	5.71730748197203	5.93190780834727	5.58075959981163	0.514722772676053	0.115509917589576	0.453729368965369
Merged-chr4-106865516-4	chr4	106864967	106865967	+	925.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46003.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	5.24130574785146	5.15801676407194	5.58094864385155	5.23451133435268	4.81290450340768	5.31354805992089	-0.412705634843983	0.293728049976491	0.690424156263798
Merged-chr14-66257826-4	chr14	66257325	66258325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	23227.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.73371025849859	5.94456543924363	5.59277309900578	5.56109884846467	5.47565359645002	5.5989466999412	-0.43123947724778	0.183573917867771	0.566825684946619
Merged-chr11-89001827-4	chr11	89001313	89002313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	2410.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.60178977172969	7.90156534721622	7.27845983995475	7.80569016114873	7.96490912677378	7.74139177910183	0.308611706165349	0.23640343871423	0.632720263621021
Merged-chr11-106420497-2	chr11	106419997	106420997	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 8 of 21)	intron (NM_023913, intron 8 of 21)	-37716.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	5.94036658447449	6.2138321300765	6.12398854478307	5.91151308181793	5.9949134707478	5.9119995837124	-0.266753877393611	0.367234789693912	0.752132138254142
Merged-chr11-11765499-3	chr11	11764908	11765908	+	663.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	43554.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.14969933924331	4.19167690306388	4.136769816403	4.06613930965974	3.91050399812601	4.57357029386809	0.118049645655523	0.818803410601044	0.957097621539533
Merged-chr13-55528597-4	chr13	55528109	55529109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-71.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	5.39003592415617	5.28852194405007	5.52459029609936	5.23561208240165	5.09039037536617	5.32885647857669	-0.369647275111196	0.290121310595853	0.687733205116261
Merged-chr6-125427563-2	chr6	125427063	125428063	+	786.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-47059.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	3.8892497610519	3.54247251395085	3.66525353352936	3.9813876415061	3.78331410493588	3.94231557623318	0.615056480264337	0.258683018905028	0.656251800083823
Merged-chr9-123933886-3	chr9	123933376	123934376	+	581.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34816.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	5.30537369875397	5.278557320158	5.4574990588972	4.98811477707416	5.01015940482191	5.09243902459701	-0.655470038871466	0.0648739907146753	0.332083970194424
Merged-chr1-65113691-4	chr1	65113187	65114187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	9527.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	7.9447995693948	8.29734503527306	7.95091674104282	7.98556170879823	8.41052555088474	7.79063412845724	0.0276370897440976	0.917355973062336	0.981588017376699
Merged-chr18-34855446-4	chr18	34854946	34855946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5761.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	6.75667160071102	6.98543962280243	6.80361875429253	7.5074312603355	7.65337656991233	7.16004599772296	0.915678132439516	0.000481412318992765	0.0102108988627963
Merged-chr1-144283505-3	chr1	144282998	144283998	+	801.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34394.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.54409661011536	4.77143994963108	4.52595439669248	4.30637183389799	4.36095620144927	4.82095549438755	-0.289273758272884	0.524158568335345	0.848607571826975
Merged-chr3-8959115-3	chr3	8958625	8959625	+	691.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5021.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.77483931602335	3.30609616957953	3.56347156943571	3.1404460263036	3.79214202981661	3.97392258461944	0.394319400559876	0.573552534482838	0.870211868444768
Merged-chr2-167988417-4	chr2	167987923	167988923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 13 of 21)	intron (NM_001080708, intron 13 of 21)	22170.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	3.50176044718076	3.23712070805763	3.4284869854192	3.40588207938463	3.01032659052662	3.09041127573852	-0.864838431607863	0.192486787026194	0.579570854889652
Merged-chr10-79878339-2	chr10	79877839	79878839	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	ID4|SINE|ID	-1328.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	5.56355897789346	5.44775442912148	5.80797248028932	5.73278576359759	5.9234918969358	5.84506938209745	0.430656378771455	0.179774726058569	0.561280830208301
Merged-chr12-40568257-2	chr12	40567757	40568757	+	713.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	122204.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.1742316534905	5.43572487444523	5.12432501810106	5.02860374218084	4.88060700673439	5.40536403391798	-0.305673475644326	0.431645617477566	0.797025687128537
Merged-chr17-32966241-3	chr17	32965745	32966745	+	984.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	414.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	6.96671212636931	7.42556491603902	7.04331576751219	7.27962613163379	7.31237432611222	6.93152255069787	0.0390150144800478	0.886952814310815	0.973794308941933
Merged-chr4-32040155-1	chr4	32039655	32040655	+	916.0	f1_balb.idr	Intergenic	Intergenic	76048.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	2.96693477546238	3.11188638663493	3.24481653176134	3.21761698347467	3.23631150746025	3.31584761401429	0.630850506654607	0.325457159173677	0.718159390122652
Merged-chr10-81286470-2	chr10	81285970	81286970	+	656.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-689.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	4.01920586845856	4.24107163548579	4.01709466558528	4.05375442387669	4.01887537330925	3.65024909958303	-0.504824213512504	0.342035160628763	0.731142095278512
Merged-chr16-95955450-3	chr16	95954940	95955940	+	935.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-26363.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.03477750264583	4.88571726521314	4.64744826103141	5.15553247957477	5.10214635867832	4.92104739830868	0.413700475117826	0.291665114030718	0.689198857889432
Merged-chr16-43948033-2	chr16	43947524	43948524	+	653.5	f0_balb.idr|f1_balb.idr	intron (NM_027801, intron 12 of 15)	MER103C|DNA|hAT-Charlie	31026.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	4.63542565957453	4.95839386496147	4.64639100590892	4.4733962616971	4.39552541846144	4.59064194043393	-0.676796586766402	0.112363079779022	0.447687566666004
Merged-chr2-60843250-4	chr2	60842763	60843763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	38175.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.66531698903416	6.77799170695856	6.26474180533933	6.33244053009277	6.77541189152938	6.36707221675702	-0.126086441010816	0.682573627943279	0.915142703005129
Merged-chr2-6728376-4	chr2	6727879	6728879	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	L1_Mus2|LINE|L1	-6717.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.66200474640502	4.31964414853753	4.48087620426818	4.41507198791547	4.09895172791313	4.54742567860819	-0.357564205102868	0.445160525831935	0.804904866107991
Merged-chr14-77850068-4	chr14	77849586	77850586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24831.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	7.65187694910038	7.58560328986249	7.46428052452182	7.82239444371241	7.99603245473687	7.43444958193866	0.30238792300843	0.231047393742803	0.626813326547916
Merged-chr10-98912583-2	chr10	98912060	98913060	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2082.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.25043023804826	3.08853593650545	3.10271296558989	2.96495314864436	2.99924742237235	3.05631559085259	-0.655995512041003	0.320458360352865	0.714315927248015
Merged-chr1-60898889-1	chr1	60898389	60899389	+	637.0	f0_c57.idr	Intergenic	Intergenic	-10136.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.10925986097447	4.06857985962889	4.27784984479795	5.68145885296728	5.77052755853977	5.54758847784655	3.62587990304719	1.59062174079185e-16	5.90859168784858e-14
Merged-chr6-134642041-4	chr6	134641516	134642516	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026371, intron 1 of 3)	intron (NM_026371, intron 1 of 3)	1076.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	5.41296134129066	5.85472858253245	5.80952710245417	5.32200137013074	5.13612800871297	5.11897471172469	-0.982724973725356	0.00601056477528414	0.0698794290655083
Merged-chr6-125071284-4	chr6	125070848	125071848	+	979.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163268)	promoter-TSS (NM_001163268)	71.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	6.69935852997013	7.01226193987819	6.71256207676535	6.76477093148615	6.60707332117859	6.3958453595288	-0.341210558887766	0.216996331642309	0.610654449516141
Merged-chr10-8779065-2	chr10	8778565	8779565	+	929.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	B3A|SINE|B2	107005.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.52338137472857	4.80224047896294	4.90657450506719	4.76765284796155	4.44206558185818	5.00395692646735	-0.00602654789654846	0.989088975263855	0.997508825363283
Merged-chr6-72361490-2	chr6	72360990	72361990	+	714.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001331167, exon 3 of 6)	exon (NM_001331167, exon 3 of 6)	942.0	NM_001331171	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	4.04805016489715	4.22615574125024	3.95239371819783	4.33193086314625	4.3138968450201	4.31353846073833	0.635427530553861	0.179085788315912	0.560488036731187
Merged-chr9-35062325-4	chr9	35061888	35062888	+	996.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	RMER6B|LTR|ERVK	-54340.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.35508346625242	5.25455719455537	5.20292751644364	5.12518143388167	5.14136056011689	5.82780506538662	0.237389615563406	0.549861177679238	0.86050509437616
Merged-chr1-132328593-3	chr1	132328089	132329089	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 5 of 7)	intron (NM_001195025, intron 5 of 7)	12464.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	4.90586322842315	5.18025348941331	5.27465286670341	5.34822704310536	5.63721029771593	5.62271224282555	0.833327652790753	0.0204278366379088	0.163737542719113
Merged-chr15-51964580-2	chr15	51964080	51965080	+	866.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009009, intron 13 of 13)	intron (NM_009009, intron 13 of 13)	27180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	3.97288955306243	3.77572870452351	4.04337553949967	5.03500266373058	5.23015392413726	4.56270320393152	2.77530154387136	2.16110321021508e-08	1.82133115861373e-06
Merged-chr19-26747012-2	chr19	26746512	26747512	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011416, intron 27 of 32)	intron (NM_011416, intron 27 of 32)	-1153.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	3.02519345198069	3.00344775633895	2.94746411340373	3.10565321983075	2.83207368433248	3.30602454624256	0.426594843480733	0.541176596166317	0.856765739682368
Merged-chr6-125645020-2	chr6	125644520	125645520	+	886.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 28 of 51)	L1MA5A|LINE|L1	-45399.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	3.0133072755236	3.38860415517547	3.0665498767309	3.19816836518379	2.82627676507495	3.14001186725572	-0.472429663610828	0.504837686675269	0.837836810464043
Merged-chr14-52279106-1	chr14	52278606	52279606	+	1000.0	f0_c57.idr	promoter-TSS (NM_023434)	promoter-TSS (NM_023434)	-40.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	6.2007189428623	5.95459996617098	6.31236491473612	6.24823839476531	6.33302646004897	6.27510865414261	0.221412864474089	0.441335203970471	0.802556876306087
Merged-chr17-28330218-2	chr17	28329718	28330718	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357628, intron 4 of 5)	intron (NM_001357628, intron 4 of 5)	1653.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	3.25970566599439	3.34134715469762	3.3782967265463	3.49392869863254	3.35743423597052	3.27759566193231	0.220148884081673	0.714788998769507	0.926044950792719
Merged-chr1-92179843-4	chr1	92179353	92180353	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207225, intron 1 of 26)	CpG	488.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	6.50731836580789	6.22308684225087	6.20461056639709	6.61222118365243	5.97765179699135	5.93891379457779	-0.170008956432569	0.613621178666764	0.887300906025089
Merged-chr13-63240435-3	chr13	63239953	63240953	+	896.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	424.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.38849686828243	6.74355743520881	6.09111714300273	6.00535642438198	5.94185159538535	5.61784683073499	-0.963273092463158	0.00384137912232473	0.0503994755613996
Merged-chr2-117996894-4	chr2	117996379	117997379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114323.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.5867605667121	6.87712963772423	6.60307984182673	6.0777465332804	5.93886177271426	6.21872555846395	-1.03106291943781	0.000275245474753735	0.00648248668647292
Merged-chr18-60978476-4	chr18	60977969	60978969	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177407, intron 15 of 17)	intron (NM_177407, intron 15 of 17)	14915.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	5.28623128965603	5.47197874563673	5.285949149388	5.66629744972464	5.38858576074915	5.35024049485963	0.237016945746212	0.493241195472224	0.831208279358962
Merged-chr2-32553934-2	chr2	32553434	32554434	+	764.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	-16924.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	5.60469405391485	5.8187745621846	5.65792820803126	5.81519662338959	5.63924224177645	5.82345401537923	0.100530592768579	0.749936621632168	0.937463855381525
Merged-chr15-86277559-4	chr15	86277045	86278045	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358062)	promoter-TSS (NM_001358062)	-130.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.55477912625842	5.59766642438309	5.41997170562941	5.09480473767117	4.92424554270787	4.67708708084234	-1.24531330262221	0.000879959796207915	0.0163181846941984
Merged-chr10-45960446-4	chr10	45959953	45960953	+	818.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	152749.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	3.97790176248956	4.18636465572887	4.04974622026747	3.91473842812262	3.93953967736083	4.20801032807262	-0.169458293531055	0.733436709042913	0.93209071038931
Merged-chr3-54669641-1	chr3	54669141	54670141	+	544.0	f1_c57bl6.idr	Intergenic	Intergenic	-23174.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	3.84075069126334	4.27703524127853	4.54639665463776	4.44210270489746	4.30464591322362	4.28182256735524	0.263027997775834	0.605726258842616	0.883581756351046
Merged-chr6-86497450-4	chr6	86496955	86497955	+	947.326416	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9228.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	5.80768957236057	5.43631960167003	5.35394710924752	5.71538305266682	5.12734090795093	5.41817095693961	-0.219443830186213	0.563752643996724	0.865992481769395
Merged-chr7-89979205-2	chr7	89978705	89979705	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1771.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	3.90789298152727	3.35466333206946	3.68064701851607	3.57199583036153	3.53368309769537	3.59206811186596	-0.361467561660229	0.543902872134212	0.857551302506722
Merged-chr17-5785211-8	chr17	5784700	5785700	+	956.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13457.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.03016020750539	4.91095500846354	4.7463766092286	5.06271525521299	5.34565021213795	4.77219375965107	0.4039492615052	0.322696311664786	0.71605919099688
Merged-chr2-145786460-3	chr2	145785952	145786952	+	734.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	336.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.00088049444306	3.37725320740032	3.29488220605034	3.08746742264861	3.16688456442197	3.13796134389209	-0.431747633054621	0.513035499297914	0.842284397332007
Merged-chr6-120085235-4	chr6	120084741	120085741	+	934.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8139.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	3.25428404406448	3.40972298657227	3.42748970614064	3.45465506686732	3.192202011311	3.33185304817601	-0.144309202820004	0.813609935899122	0.955940138311315
Merged-chr8-70565616-1	chr8	70565116	70566116	+	776.0	f0_balb.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	25941.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	2.37525596416274	2.23465209024192	2.44969142189494	2.17215197331497	2.09738845414114	2.46172580770583	-0.715218001234624	0.424173088409081	1
Merged-chr3-7613052-5	chr3	7612522	7613522	+	947.2800289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313890)	promoter-TSS (NM_001313890)	-129.0	NM_001313890	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	2.66484091119505	2.40642526795385	2.56670056354292	2.99016195550328	2.92900956649469	2.90094096866213	2.21754217566121	0.0068141954303268	0.0766417374110074
Merged-chr1-105778253-2	chr1	105777753	105778753	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-2470.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	2.82757619531457	2.83902963313685	2.95026518299876	2.75972940540187	2.64230778010056	2.90556530916164	-0.533440759491342	0.460605827710386	0.814564932348408
Merged-chr13-99238904-4	chr13	99238404	99239404	+	824.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 3 of 4)	intron (NM_001004149, intron 3 of 4)	54081.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.04335288069007	3.98385816400154	3.9211741469189	3.80086614845764	3.76855917423142	4.08471374424401	-0.31935579878148	0.533568357794954	0.852484319020423
Merged-chr19-25136546-2	chr19	25136046	25137046	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 22 of 47)	intron (NM_028785, intron 22 of 47)	-100429.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	3.29865295167072	3.47951525885422	3.65525115491632	3.89413561907548	3.93835155122389	4.01972165964186	1.61956280066154	0.00419413250738139	0.0538640805177019
Merged-chr11-100320493-4	chr11	100319987	100320987	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011508, intron 1 of 3)	CpG	538.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	8.66746591827339	8.32677621234456	8.16990493788974	8.27497994097414	8.43163852104361	8.13519945057208	-0.167335519844346	0.486912369916181	0.828094524076599
Merged-chr17-23564256-4	chr17	23563738	23564738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033496)	promoter-TSS (NM_001033496)	-12.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	6.99742030253312	7.18770563383824	7.18795984634566	7.00845081196766	7.37326545032991	6.92964465122026	0.00719190012250379	0.978198494363607	0.995070777384379
Merged-chr7-29983788-4	chr7	29983303	29984303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167873)	promoter-TSS (NM_001167873)	-152.0	NM_001167873	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	7.1305093861459	7.29314131553386	7.22516209542378	6.9156846008754	6.42395839806737	6.98691319265906	-0.656071843692222	0.0182725623337487	0.152423395154542
Merged-chr10-25449558-4	chr10	25449081	25450081	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	41213.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.68677015058752	5.79051162131691	5.49824525742267	5.48099311719102	5.19807655624321	5.47269967500579	-0.553813214918329	0.102372433012523	0.426739421686342
Merged-chr7-105767940-4	chr7	105767470	105768470	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 2 of 20)	intron (NM_001162943, intron 2 of 20)	-15735.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	5.9683759025483	6.0012215017755	6.02637486939343	6.40043087561018	6.33694529969888	5.7829643669508	0.370175050194834	0.244523583928054	0.641961203113696
Merged-chr19-61265084-1	chr19	61264584	61265584	+	850.0	f1_balb.idr	Intergenic	B1_Mur3|SINE|Alu	-36666.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	4.63072829872616	4.65550546906666	4.53906999442444	4.54807054035885	4.82598586997024	4.64800767142459	0.173809548323584	0.675280992085425	0.912152821313949
Merged-chr8-25100431-4	chr8	25099960	25100960	+	742.075012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	1351.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	6.17965089667902	6.37084681285728	6.49241780957336	6.38530340596601	6.33610888859272	6.35207202818605	0.0171375096465389	0.950557892310355	0.988444308820256
Merged-chr9-66600871-2	chr9	66600371	66601371	+	665.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7756.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	6.07825120887333	6.18283796366111	6.44460235168594	6.09410794624953	6.14263495151254	6.48665580901856	0.0134891491869056	0.964453103331933	0.991478598183903
Merged-chr6-24707858-3	chr6	24707365	24708365	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25380.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	5.95720738363277	6.27987347200105	5.98389932106365	5.06414593139127	5.13433252442508	5.01791494962345	-1.9050548817189	2.94829750062051e-08	2.41812469921944e-06
Merged-chr11-86999702-3	chr11	86999194	87000194	+	602.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5932.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	3.9322312021383	4.00228088057839	4.26284744161836	4.11771593750485	4.06082944697858	4.19962995593319	0.170775392994715	0.726140566813644	0.929743505822386
Merged-chr10-121510130-4	chr10	121509708	121510708	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33958.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.28502232738409	4.27256067686623	4.55150157241177	4.00168103701904	3.91796406636478	4.06528361214025	-1.06647456244687	0.0266776274441865	0.194383863963785
Merged-chr3-55112124-4	chr3	55111670	55112670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144895)	promoter-TSS (NM_144895)	4.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	7.88159747610977	8.01706632255336	7.88011166192351	8.05022964034757	8.11741086685239	7.96752461182879	0.170296561891124	0.422585589225209	0.79138410692668
Merged-chr9-115310572-4	chr9	115310102	115311102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024222)	promoter-TSS (NM_024222)	-181.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	8.16475129974581	8.4270992400976	8.01854097908498	8.21360209162105	8.14793563156388	7.99093614659323	-0.136250820131819	0.553621136931982	0.862371517196081
Merged-chr10-80160994-4	chr10	80160493	80161493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-6846.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	7.717186849171	7.46481863780829	7.60860133200415	7.818143856321	7.90408543473493	7.54796145786264	0.24857641463129	0.294495251200514	0.691295761612897
Merged-chr9-26997252-4	chr9	26996768	26997768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025862, intron 1 of 10)	ORR1A4|LTR|ERVL-MaLR	2281.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	4.16394797719162	4.01766542561403	4.24442445620607	4.081828346414	4.22085812967016	4.4365647956354	0.299483199295431	0.530327214196071	0.851072941285938
Merged-chr8-115598486-2	chr8	115597986	115598986	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108408.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	4.58663811303022	4.67147081251227	4.70551350429948	4.10526965607982	4.41340399980657	4.6963467064087	-0.578149654155038	0.205373767675866	0.596047563330878
Merged-chr7-63906533-3	chr7	63905980	63906980	+	834.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	-10377.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	7.46348844771246	7.54675977187125	7.06425303175024	7.45622094725168	7.71520356008305	7.41641435807948	0.230301192476819	0.37542273977775	0.758668496209522
Merged-chr13-59818527-4	chr13	59818041	59819041	+	654.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	4606.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.32836173102822	3.87840992285721	4.32566143237958	3.92681158579865	3.9855689895978	4.30901527298176	-0.319823100331302	0.537480163412591	0.854545704351484
Merged-chr8-120717196-2	chr8	120716696	120717696	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19162.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.33600721918624	5.30522089411098	4.980393322035	5.28876193275168	5.19764273420345	4.92956318620779	-0.146120161475981	0.6983672277128	0.920332843065367
Merged-chr2-73313288-4	chr2	73312790	73313790	+	842.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025854)	promoter-TSS (NM_025854)	638.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	8.07881112533633	8.52268205500954	7.99354430018102	7.89258323926349	8.50100098529575	7.92336249411138	-0.111004955349176	0.696331582189189	0.919440123947475
Merged-chr3-38130297-1	chr3	38129797	38130797	+	700.5	f0_balb.idr	Intergenic	Intergenic	77822.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.64934706579369	4.42489073276338	4.64145686420185	4.55654541879925	4.42332480342167	4.95531450494629	0.18964866120209	0.670038673453565	0.909877715716983
Merged-chr15-102225567-4	chr15	102225041	102226041	+	889.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	6394.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	3.15363684244706	3.5025754691469	3.55556780495565	3.37148471677474	3.44198813369736	3.62505190703126	0.249769570853645	0.68581750622179	0.916508786099555
Merged-chr8-115705837-6	chr8	115705280	115706280	+	800.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001025577, exon 1 of 1)	exon (NM_001025577, exon 1 of 1)	1114.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.39601586612119	5.37953483722957	5.79933562034061	5.78222977803898	5.60762171624626	5.95128838849917	0.468403608495965	0.170961467177843	0.548945039782895
Merged-chr8-35679217-4	chr8	35678706	35679706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-90186.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.70520030996197	5.56286411415945	5.78959187762512	5.47330130112938	5.36442837834967	5.62260699223554	-0.380465874903335	0.245197907545294	0.642381314494918
Merged-chr11-75170457-4	chr11	75170012	75171012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010430)	promoter-TSS (NM_010430)	-257.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.80139678134449	5.45098310776924	5.43097119081273	6.18480073965948	6.21105141896755	6.24480390905983	1.11101572122741	0.00044415319607661	0.00957189824893618
Merged-chr10-10411231-4	chr10	10410705	10411705	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 12 of 36)	intron (NM_001127353, intron 12 of 36)	61109.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.23510583346575	4.38772462153518	4.39030351750083	4.53099817699971	4.35770801575066	4.18157324899631	0.0850370385420932	0.851905601509497	0.96531854415899
Merged-chr11-104001705-4	chr11	104001206	104002206	+	920.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34835.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	5.36806678750355	5.59778174475065	5.01690381413951	5.13266191170216	5.22855130520202	5.08327562204608	-0.419421523396864	0.267394027428633	0.664678416083957
Merged-chr15-27660574-2	chr15	27660074	27661074	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 4 of 6)	intron (NM_198301, intron 4 of 6)	20968.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.1039802164833	4.6183555048636	4.81584969234941	4.12812515318065	4.37832530342339	4.25308171412316	-0.715200730894808	0.153795608710975	0.522861083130656
Merged-chr12-84771307-2	chr12	84770807	84771807	+	779.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 1 of 3)	B4|SINE|B4	1805.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.30948005663893	5.40896637443821	5.08790944320457	5.76510791399806	5.63076717577077	4.9976185637722	0.452605055716517	0.253854839912329	0.651117231535132
Merged-chr3-97661418-4	chr3	97660929	97661929	+	912.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182997, intron 2 of 7)	MER58A|DNA|hAT-Charlie	3217.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	3.72385346807028	3.84303709289679	3.92896096409483	3.86101459087263	3.77229367590527	3.74724927841715	-0.112961915056976	0.828687671178438	0.9598352930318
Merged-chr3-153913005-4	chr3	153912492	153913492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163478)	promoter-TSS (NM_001163478)	-26.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	7.47621798609038	7.76664459142964	7.65727887390824	7.4761605247097	7.65463582361539	7.59376766848396	-0.0885894984449266	0.701835592100676	0.921589091285891
Merged-chr10-62489454-2	chr10	62488954	62489954	+	838.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2649.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	2.13210957794187	2.30201731878321	2.04423225669571	2.31133462326076	2.10693156539518	2.45509931879388	0.88423986316204	0.345572827677153	1
Merged-chr12-76265151-4	chr12	76264646	76265646	+	826.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 1 of 27)	RLTR11B|LTR|ERVK	9914.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	3.46422769435251	3.56892646368022	3.65510394564583	3.77402648076894	3.76832700356015	3.61859225426822	0.572238455824664	0.299177886768924	0.695964214930834
Merged-chr12-40544779-4	chr12	40544282	40545282	+	821.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	98729.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.54776215829412	5.38525908473441	5.42936831139098	5.23262042150336	5.37031936961044	5.37209154019299	-0.255466946042331	0.448450890021736	0.80725470300829
Merged-chr7-128312504-4	chr7	128311996	128312996	+	985.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14365.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	5.70644408511061	4.98067621961952	4.94068067202745	5.65485492399038	5.60923172608584	5.00929763361209	0.370263553369138	0.40782183007849	0.781919160576668
Merged-chr14-51052857-2	chr14	51052357	51053357	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2694.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	4.8112010951013	5.02129948832962	5.44542570843333	4.56815495186587	4.55898807588177	4.64159137444971	-1.17305565286618	0.00602773540663469	0.0700058389191538
Merged-chr5-110176875-4	chr5	110176393	110177393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	36.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	8.08826211986273	7.88140445183356	7.7684281971745	8.15611307114009	8.20321518824917	7.75303405364346	0.193677205638995	0.428530434814953	0.795368392855003
Merged-chr4-71291985-4	chr4	71291490	71292490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-757062.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	5.8646992152725	5.90654317415628	5.79731328566251	6.04783309489783	6.15576072474612	5.98295449863619	0.365137149890268	0.213326514303282	0.606196206830948
Merged-chr6-122853798-4	chr6	122853352	122854352	+	798.4381099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	2305.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	7.86449621658942	8.42217817242848	7.59623797643404	7.82982038120965	8.28288764953716	7.97019067629501	0.0393916729919893	0.893901745626304	0.975281562029123
Merged-chr4-15257003-4	chr4	15256499	15257499	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8821.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	3.18997733187714	3.33286222463885	3.22764843184729	2.91933879501793	2.59148364610227	2.87980786028261	-2.35060409933455	0.00281790531330733	0.0400922079676409
Merged-chr7-27198591-4	chr7	27198071	27199071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290513, intron 2 of 7)	PB1D7|SINE|Alu	-2300.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	6.24272188853391	6.24807757873968	6.7802115412515	6.59333978188806	6.46235544353911	6.6602924576073	0.216615822603913	0.469249113514392	0.818943090863774
Merged-chr18-61726331-4	chr18	61725817	61726817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	14.0	NM_021296	17714.0	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	7.6818190332636	8.00743592283872	7.59317706776316	7.65607002642815	7.66373319255607	7.52017149256277	-0.233955654299555	0.329783075230836	0.721504110160967
Merged-chr8-119935678-2	chr8	119935178	119936178	+	683.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009462, intron 2 of 13)	intron (NM_009462, intron 2 of 13)	25318.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	3.31658201659947	3.03916618656258	3.16691770551341	3.78244014471646	3.50847726951431	3.5358756436537	1.70355042492429	0.00770748731724734	0.0837675815952869
Merged-chr17-35220765-4	chr17	35220249	35221249	+	967.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010909, exon 4 of 4)	exon (NM_010909, exon 4 of 4)	-14261.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	5.62671073561347	5.62129765611743	5.78361079927586	5.69945997133961	5.74597480275392	5.84472544568104	0.161906732325233	0.601672900497646	0.881998497315248
Merged-chr4-35157475-4	chr4	35156968	35157968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	16.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	4.2277281759008	3.88138104617671	4.19558756580242	3.76439236337239	3.72693129621288	3.83898263876241	-1.03114034519035	0.0483391009386231	0.27885468045625
Merged-chr17-87378523-3	chr17	87378031	87379031	+	847.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	49210.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	3.41507782869095	3.58072696423634	3.54844601078993	3.18537136064604	3.12833403891135	3.34983136255661	-1.20227315019469	0.0515256064130562	0.28947016801145
Merged-chr13-81785052-2	chr13	81784552	81785552	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	1805.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	3.78944459865544	4.11227949052611	4.22607653572543	4.11461712046334	4.16018860896154	3.85996574643628	0.024338682185382	0.962657845313233	0.990929979870148
Merged-chr15-102722196-4	chr15	102721674	102722674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026192)	promoter-TSS (NM_026192)	4.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	5.62325643641358	5.80677024517125	5.38464792348961	5.78371607088424	5.77395489806455	5.57313193130692	0.167107846414846	0.61533955871517	0.887891894731244
Merged-chr1-93805073-2	chr1	93804573	93805573	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025454, intron 1 of 7)	intron (NM_025454, intron 1 of 7)	1108.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	3.25823433610454	2.97115532286509	3.30069063472171	3.03673387408355	2.85715300415217	3.26364783278479	-0.54865998567376	0.429191743122632	0.795655168027537
Merged-chr12-76962360-4	chr12	76961846	76962846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146176)	promoter-TSS (NM_001146176)	-98.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	7.64948927736293	7.86753059457545	7.75605943223015	7.79829206205316	7.75019024387385	7.52203710054365	-0.0871335068020965	0.70325704850429	0.922108924938678
Merged-chr14-33303617-4	chr14	33303106	33304106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86783.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	2.92090473815791	2.65741890425562	2.86206591973583	2.77575426170971	2.5500353579279	2.93478327735689	-0.306885729105338	0.687206386759025	0.916995189464615
Merged-chr10-80985759-4	chr10	80985248	80986248	+	926.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	CpG	15617.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	5.18140011581477	5.26343400822346	4.85296792687819	5.2091527289346	5.00070904702938	4.61544523535501	-0.307648052637722	0.460882846756093	0.814802506471053
Merged-chr2-112492596-2	chr2	112492097	112493097	+	800.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-367.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	6.90836412400185	6.9372279331222	6.44397741655684	6.96130287337203	6.53409630337564	6.81283061110607	-0.0244582696736645	0.933445699275153	0.985469699179496
Merged-chr2-170174768-3	chr2	170174233	170175233	+	620.077759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32058.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.30899188955076	5.21059707621833	5.21509953359621	5.10619984814907	5.25782059734312	5.5691603995843	0.136669801653315	0.705333438931803	0.922756484933722
Merged-chr11-115277128-4	chr11	115276654	115277654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007997)	promoter-TSS (NM_007997)	-185.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	7.10536171784966	7.29718912408925	7.1629577044816	7.28050575939795	7.63130269162983	6.99288312814439	0.221613161654598	0.417404435876335	0.787970785225811
Merged-chr10-81136987-4	chr10	81136516	81137516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	CpG	745.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	7.88729451958028	7.94775364885495	8.10657530470081	7.76584058784011	7.97449866249602	8.15611684724377	-0.0116247251239901	0.959735354695494	0.990242512723989
Merged-chr11-58939576-3	chr11	58939075	58940075	+	844.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-669.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	4.21870304103187	4.37769748439386	4.39880728953858	4.40624492785774	4.33409200211936	4.4231569867224	0.141426393463111	0.749271441708069	0.937228516132424
Merged-chr11-50212126-4	chr11	50211628	50212628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1308.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	7.98027924481352	8.08669268440422	7.46591449497235	7.55058582767429	7.85140864607052	7.05491890466199	-0.489160780380893	0.112695480561803	0.448410747254519
Merged-chr4-46088055-3	chr4	46087567	46088567	+	985.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48845.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	4.96500374308414	5.29700121647492	5.24920573134903	4.10480249979412	4.06997487647256	4.50258826268918	-2.3418819472709	2.4607930878133e-07	1.57263956413801e-05
Merged-chr1-9748497-4	chr1	9747994	9748994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173443)	promoter-TSS (NM_173443)	-112.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	7.23607624650247	7.33701309510926	7.13245548343295	7.2082006622072	7.2574460899865	7.40752986760144	0.0698971340242128	0.767251460625153	0.942573703853445
Merged-chr7-135520433-3	chr7	135519914	135520914	+	738.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	8240.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	2.65238862451743	2.51120321816516	2.81139927775727	2.40967315449868	2.19968434412608	2.52136014452705	-1.82314952473616	0.0408969555240662	1
Merged-chr19-3709316-3	chr19	3708831	3709831	+	683.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358257, intron 1 of 3)	intron (NM_001358257, intron 1 of 3)	920.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	2.8952133191793	2.99068500584315	2.74492811363176	2.95187749203318	3.03921497773913	3.06797480388916	0.62980899950136	0.370450659547668	0.754835402087431
Merged-chr1-165666466-2	chr1	165665966	165666966	+	654.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-31925.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.34348494002819	7.08508835069438	6.95590966753418	7.22576899875458	7.12867722420576	7.12148544136682	0.020972026332811	0.933217153006978	0.985356091252617
Merged-chr2-181238325-2	chr2	181237825	181238825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 5 of 19)	exon (NM_183162, exon 5 of 19)	3702.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	3.61718611566765	3.12575949417018	3.64453869833026	4.0654772869863	3.73792052431638	4.01272638142327	1.55942923657754	0.0137759146638619	0.125403354577078
Merged-chr11-46436952-4	chr11	46436449	46437449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025426)	promoter-TSS (NM_025426)	2.0	NM_001104530	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	7.62002442212307	8.22438854309515	7.55335215333303	7.65853454509237	7.71488047679252	7.50748839837514	-0.305584388350949	0.26868884357015	0.665928153896649
Merged-chr7-19462798-2	chr7	19462298	19463298	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-4304.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.69396644821651	6.05869667480637	6.24293330595043	6.26817235885928	6.17192505704259	5.93289172590092	0.219290175136595	0.495510524478016	0.832500902975543
Merged-chr16-38761594-4	chr16	38761113	38762113	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	19354.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.82821498579583	6.05197399145703	5.7487890992404	6.41701774360143	6.41000495987712	6.45004547144334	0.897063374035364	0.0020205465963767	0.0311978299021065
Merged-chr15-83170946-2	chr15	83170446	83171446	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	1262.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	4.76843731159192	4.89336320574866	4.8342844677552	4.93034546480357	4.90719143874332	4.82356158827458	0.128307150050849	0.737598594219275	0.933814636237903
Merged-chr4-62408730-4	chr4	62408220	62409220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	-63.0	NM_027297	70052.0	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	8.26052635957342	8.79253017935519	8.04283670993283	8.58891466235764	8.87452210305052	8.32825671797284	0.288556761527402	0.311274849201036	0.706465219571547
Merged-chr13-92611012-4	chr13	92610515	92611515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172588)	promoter-TSS (NM_172588)	-123.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	6.90265150384828	6.90834403329726	7.01846558332823	7.15740721312481	7.09889335231384	6.8193113852042	0.153976253053648	0.539706892317918	0.856057704035328
Merged-chr17-46857286-4	chr17	46856793	46857793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-25880.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	8.99194509510469	9.23707661870551	8.8603342670993	8.98657566158429	8.91648363453842	8.79984576746649	-0.189271337060568	0.375923797688755	0.758951282467405
Merged-chr13-58456555-1	chr13	58456055	58457055	+	597.0	f0_balb.idr	Intergenic	L1MA4|LINE|L1	-53212.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.81943331924886	4.99028605599812	5.02045360302577	4.98029568979847	5.13010809616164	5.01517060549694	0.227195669399283	0.543496702860707	0.857551302506722
Merged-chr13-35955522-1	chr13	35955022	35956022	+	603.5	f1_balb.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12384.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.36396099567215	4.27305698080101	4.73987539316133	3.90032923174006	3.90925064739805	4.08441735799071	-1.4083372569765	0.00468009211091865	0.0584804181356538
Merged-chr4-141606776-2	chr4	141606252	141607252	+	737.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-700.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	5.97097027728843	6.00695639245734	5.58408758977062	7.11427084340425	7.44150894705609	6.98426256201026	2.10660857977094	8.87641378070074e-12	1.44255593332919e-09
Merged-chr14-31018511-2	chr14	31018011	31019011	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081251)	promoter-TSS (NM_001081251)	620.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	7.85907682238977	8.21847658209933	7.62303286577442	7.88963340154876	8.20554369403867	7.39966378462036	-0.0659570830089157	0.82644555554041	0.959132530412348
Merged-chr6-39076727-4	chr6	39076228	39077228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 10 of 12)	intron (NM_011539, intron 10 of 12)	-9142.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	4.84867104384085	4.80107920932466	4.6852199402759	5.02228440413553	5.06344811578639	5.24292680349898	0.705848538421406	0.0645939645840839	0.331208118014144
Merged-chr6-38967407-4	chr6	38966922	38967922	+	937.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	ORR1D2|LTR|ERVL-MaLR	48436.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	6.37895433620394	6.19051194678012	6.40012039045206	6.5964351196898	6.61447016049962	6.38376846829126	0.35915573469506	0.188826156361587	0.57432638149413
Merged-chr10-128790937-4	chr10	128790449	128791449	+	910.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164197)	promoter-TSS (NM_001164197)	-6.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	5.35546557821654	5.6078587427468	5.4787574039031	5.24723991943269	5.3340014242933	5.23217616750768	-0.411593042121354	0.228503253995218	0.623673120725385
Merged-chr5-123721043-4	chr5	123720533	123721533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027494)	promoter-TSS (NM_027494)	11.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	6.32269943973021	6.51513202886866	6.56388091323198	6.74438332543412	6.76305112714396	6.49954800611278	0.343451365770634	0.202292049227038	0.592082620988546
Merged-chr1-195003105-4	chr1	195002732	195003732	+	776.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14167.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	4.64258190618178	4.46490989964503	4.06890814281538	3.79538288877764	4.06069096066101	4.23351145729838	-1.09211951241681	0.037473623363458	0.239228575481557
Merged-chr2-3714197-3	chr2	3713611	3714611	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	653.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	6.11466839383468	6.24747729268281	5.95602455945192	6.0672356717201	6.20108447172117	6.23839605429675	0.0832245830190537	0.77403800101275	0.94425470583833
Merged-chr4-141503295-3	chr4	141502779	141503779	+	782.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	35318.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	4.1073888878817	4.02687722500354	3.86811284446062	3.98984678679399	3.93094228298911	4.08620906046774	-0.0366772477971524	0.941175844218367	0.986908937621943
Merged-chr13-73937835-4	chr13	73937341	73938341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	30.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	6.73894516988629	6.47891556883837	6.60610126248081	6.72146545543978	6.51522011679753	6.72932053792554	0.0643768276100272	0.809284576578108	0.954721853010197
Merged-chr14-33205613-4	chr14	33205091	33206091	+	893.70343	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11232.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.67285629773105	4.39487305819476	4.74110118293698	4.59993910540974	4.46176836988242	4.65459537745031	-0.087984342569588	0.837475251269446	0.962133986386607
Merged-chr1-80639184-4	chr1	80638664	80639664	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	MTEa|LTR|ERVL-MaLR	26188.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.767935896488	4.45131932481475	4.59268535736806	5.00895328062261	4.72532543272795	4.81965820838719	0.562305193984953	0.176241966966085	0.556471161767709
Merged-chr1-183804018-4	chr1	183803500	183804500	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55023.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.68552936514613	5.17695062347324	4.56972354877312	5.41037228443052	5.25108253696166	4.8310550289949	-0.0679456269546401	0.932064393549131	0.985035285260106
Merged-chr14-55605017-4	chr14	55604507	55605507	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159418, intron 1 of 8)	B1_Mur1|SINE|Alu	428.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	6.51519963467839	6.85827527492245	6.46267205102662	6.80819166009329	7.13708306960208	6.52267234349486	0.3565871604673	0.2385172071513	0.635267379893833
Merged-chr2-170321640-4	chr2	170321138	170322138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34723.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.93103178019312	6.93273122097182	6.61533570029151	6.80634705873034	7.13479751051083	6.77345341964727	0.127809993773828	0.639652953971191	0.898199312621371
Merged-chr9-104259927-2	chr9	104259427	104260427	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	L1MCc|LINE|L1	3003.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	2.77268732907451	3.08153758571284	3.12428031285144	3.10185458421024	2.85427891497145	3.2509349007627	0.332236453275894	0.641858203916965	0.899197812256171
Merged-chr3-8994915-1	chr3	8994415	8995415	+	549.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	9289.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.75039671039567	3.53299718474295	3.79965275189953	3.74861838106189	3.8251205926424	3.54904580080159	0.0839947795256672	0.880185802279649	0.972457465737931
Merged-chr6-4601615-3	chr6	4601114	4602114	+	694.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145398, intron 1 of 17)	intron (NM_145398, intron 1 of 17)	548.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	5.1547353667745	5.3290119934761	5.33352323119157	5.31225942487122	4.88909054094885	4.61547197091	-0.609987722043842	0.138899010621491	0.497922464673413
Merged-chr4-43546892-1	chr4	43546392	43547392	+	621.0	f1_c57bl6.idr	exon (NM_011602, exon 20 of 57)	exon (NM_011602, exon 20 of 57)	15691.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	3.3068915060188	3.44350673475069	3.49163382706768	3.17328256589559	3.24008884173948	3.89333279681056	0.208833463439776	0.753743258965154	0.938570691167124
Merged-chr6-83505926-2	chr6	83505398	83506398	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	1071.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	5.2369332400645	5.49727488877238	5.21659020563713	5.59744889723229	5.94364664034798	5.72979187911198	0.827630469238034	0.0159650166622024	0.138723590896882
Merged-chr9-116140662-4	chr9	116140278	116141278	+	737.408325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	34585.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.02792127351478	6.33896398873117	6.07265889030853	5.34208520129646	5.29127475424511	5.26702833325274	-1.57018179359183	1.21980198172743e-06	6.44836615600864e-05
Merged-chr5-66101139-1	chr5	66100639	66101639	+	1000.0	f1_balb.idr	intron (NM_001127382, intron 2 of 7)	B4A|SINE|B4	-2960.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	3.47971099387916	3.33687225034571	3.48686209544108	3.39638794680607	3.16199991714286	3.65862588478964	-0.0832259767029487	0.893659164695768	0.975265071347118
Merged-chr3-157933704-1	chr3	157933204	157934204	+	1000.0	f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-8641.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	2.59682675374668	2.74116512634879	2.58468748062125	2.9155859468668	3.2654667392243	2.98808910204139	2.2155512865919	0.00547061708724374	0.0652989680957362
Merged-chr5-20943743-6	chr5	20943222	20944222	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-7267.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	6.08668277933379	6.13256915107085	6.41506591239132	6.17922482183386	6.34556537083467	6.09742078655952	0.017458084764082	0.952510133299853	0.989124260059756
Merged-chr11-53780024-1	chr11	53779524	53780524	+	1000.0	f0_balb.idr	Intergenic	Intergenic	9551.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	3.93577617807667	3.61858033986066	4.5675715070076	4.42593969268513	4.47736707505398	4.4800258325017	0.963777154492841	0.0910253762138042	0.401571470441558
Merged-chr5-150178382-4	chr5	150177894	150178894	+	724.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81536.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.60048613338349	2.52465565192656	2.45650055071385	2.64218807592932	2.41434914865656	3.07240455705379	1.10659742386772	0.189295092946153	0.575017015693032
Merged-chr4-118099791-2	chr4	118099251	118100251	+	853.25	f0_balb.idr|f1_balb.idr	intron (NM_001285520, intron 2 of 11)	ID_B1|SINE|B4	35195.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	4.21197029100783	4.27783723978359	3.63055905794536	3.40515928488616	3.10264894901885	3.46493775573128	-2.81444004218467	2.92423567469756e-05	0.00100586937585876
Merged-chr11-23304376-2	chr11	23303876	23304876	+	720.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2519.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	2.98341002328271	3.07838502434997	2.97160544840622	3.1249455290143	3.06018564977831	3.16275656704467	0.448333343216312	0.494594071822259	0.832098209532918
Merged-chr6-73059936-4	chr6	73059419	73060419	+	954.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164669, intron 61 of 76)	MTEa|LTR|ERVL-MaLR	-101171.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	3.25647459900313	3.39417158993132	3.17052730576853	3.52372525249412	3.46650072016702	3.53239522852806	0.857386400378829	0.157714092661503	0.529198725332145
Merged-chr11-61533852-4	chr11	61533363	61534363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252188, intron 5 of 10)	intron (NM_001252188, intron 5 of 10)	28719.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	5.5185335008955	5.01539777755005	5.67663067500744	5.00310665016128	4.88710963519543	5.25053136979512	-0.769371000468676	0.0553032854170667	0.302304281499362
Merged-chr2-144695297-3	chr2	144694764	144695764	+	949.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	95311.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	4.57299196030736	3.96058175426394	4.24405431713822	3.8873879459789	3.80333900369419	3.92967455065945	-1.21132431413358	0.0216341736321489	0.17021375617691
Merged-chr3-104856276-1	chr3	104855776	104856776	+	651.0	f0_balb.idr	intron (NM_009797, intron 1 of 9)	ORR1B2|LTR|ERVL-MaLR	8229.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	4.40818323510422	4.20395781929305	4.03973778422781	4.43842435101782	4.53699606922712	4.30941780472386	0.531272433045175	0.255904361878912	0.652867953552546
Merged-chr9-57262505-6	chr9	57261994	57262994	+	993.380981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028820, exon 1 of 3)	5' UTR (NM_028820, exon 1 of 3)	105.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	7.94717613592103	7.99288068855793	7.83694567378611	7.76340390738602	7.68517670040306	7.12247557008221	-0.524007856944438	0.0468714158762393	0.274112789726604
Merged-chr2-27310381-2	chr2	27309881	27310881	+	794.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	B4|SINE|B4	-63078.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	4.1200600232358	3.97566892357009	4.4235513460249	4.27981628120006	4.00868066923682	4.15050636176284	-0.0803680601616455	0.871493598613623	0.970222087171093
Merged-chr7-67247641-2	chr7	67247141	67248141	+	649.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	MTC|LTR|ERVL-MaLR	25025.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	3.98001019919096	4.10650243788179	4.04649506597841	4.03756112280007	3.65839058347027	4.02017859363313	-0.414911224615372	0.424539750617989	0.792697196836987
Merged-chr7-141019274-2	chr7	141018774	141019774	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2382.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	2.20664228092439	2.25540175399737	2.37923279322249	2.51923048382189	2.31011240830492	2.51783925317265	1.12154028159776	0.184751864713935	1
Merged-chr6-43849395-4	chr6	43848893	43849893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-183115.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	5.67062783592665	5.44193220036422	5.63102347141304	5.48536318376489	4.86875775951669	5.38483122066051	-0.619762300514609	0.102702430601434	0.42734729436836
Merged-chr19-3910365-2	chr19	3909865	3910865	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	intron (NM_001271443, intron 5 of 6)	2409.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	5.18412889558523	5.15804939445361	5.20183014862093	5.24027937785003	5.21862546632164	5.16642836036351	0.0631935321437766	0.85600649504495	0.966352723941166
Merged-chr4-141540211-1	chr4	141539711	141540711	+	545.0	f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1614.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	5.89529985150876	5.6400202488707	5.99104142301199	6.14835136222405	6.17582111129047	6.20127833574861	0.577543727339764	0.0533858093169883	0.296216154918513
Merged-chr5-66363021-2	chr5	66362521	66363521	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25356.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	2.22288644935051	2.11822651181795	2.34965203468397	2.21983854717701	1.843034369152	1.9504842619037	-1.69766210747387	0.114676580903134	1
Merged-chr2-128705575-2	chr2	128705075	128706075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	6660.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.34177048121388	5.39264858374779	5.78934670752455	5.32561071977626	5.33707196046213	5.24790915157964	-0.395948920399012	0.264616946677451	0.662558796858873
Merged-chr5-3494598-4	chr5	3494168	3495168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-49165.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.9106906105648	6.74172179916744	6.71805156156231	6.10223912692472	6.30374797088039	6.1218168005123	-0.982572090105037	0.000319240944857424	0.00732994644854789
Merged-chr18-24653420-4	chr18	24652916	24653916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-275.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	6.25112385992176	6.35142212849531	6.18854170511126	5.96957013754418	5.92241196762306	6.00765509113138	-0.525278810212799	0.0636898896576741	0.328860272341698
Merged-chr2-128769203-3	chr2	128768705	128769705	+	863.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	RLTR11B|LTR|ERVK	-49098.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.77588041524093	4.47155890361139	4.83218321831587	4.41339735319617	4.64136771556263	4.59363609852948	-0.337167670230764	0.433394955495908	0.797815674529737
Merged-chr6-146080267-2	chr6	146079767	146080767	+	882.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	146145.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.25455689937366	3.17306336280416	3.1944629103375	3.35495942521629	3.33486539472998	3.26673314857553	0.463036068060715	0.450600968177148	0.808443910792592
Merged-chr17-25914106-4	chr17	25913617	25914617	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	5597.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	5.2828283841746	5.38778972823151	5.09877621862798	5.28991666405139	5.32618397128268	5.12843152017015	-0.0261653307599395	0.941323202017994	0.986947626233663
Merged-chr3-27742338-4	chr3	27741838	27742838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31886.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	3.74466527682121	3.84103547622041	3.99145886020032	3.56680183650028	3.40137404786062	3.38536957186446	-1.42238318129887	0.0135355702839903	0.123915472790215
Merged-chr7-46839611-3	chr7	46839090	46840090	+	871.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6214.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	5.30014462046875	5.05399086474062	5.54029657168975	5.08672214846903	5.13242655518534	4.7852209004463	-0.582003674309224	0.138616544342047	0.497532561229765
Merged-chr2-131263483-2	chr2	131262983	131263983	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_149748, intron 1 of 8)	intron (NR_149748, intron 1 of 8)	644.0	NR_149748	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	5.50223713609001	6.00861616060642	5.93901876633004	5.84373076294249	6.15496846175093	5.9297060899729	0.273149874700451	0.41290006456382	0.78471875852647
Merged-chr2-160209613-3	chr2	160209108	160210108	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	117886.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.72267037437239	5.601226760802	5.72522623635485	5.50009356343888	5.4032629162578	5.65778894090272	-0.313316298635151	0.331716465661974	0.723003238653287
Merged-chr19-42170574-4	chr19	42170103	42171103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177319)	promoter-TSS (NM_177319)	36.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	7.0400255016873	7.34654719426672	6.99868328444427	6.74408182045403	6.98787355436918	6.67657307417209	-0.495513014234886	0.06364466327846	0.328767639677588
Merged-chr5-113646341-2	chr5	113645841	113646841	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2738.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	6.52463068602261	6.64318992507855	6.90725653169334	6.86235079377078	6.81173763410558	6.58015827351181	0.11120848570756	0.682277258840186	0.915044974923355
Merged-chr14-54778853-1	chr14	54778353	54779353	+	570.5	f1_balb.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	3033.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.26461617476652	4.22051146390085	4.04202947468197	3.97154174302257	4.45815781949539	4.55184981931438	0.443153200165727	0.375936940361843	0.758951282467405
Merged-chr19-44410773-2	chr19	44410273	44411273	+	884.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3064.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.51856377651467	3.48918756203898	3.73395160680207	3.69739088624472	4.04024379476444	3.589636121146	0.748234932407546	0.192718859319142	0.579693140399516
Merged-chr5-8353885-4	chr5	8353388	8354388	+	988.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	L1_Mus2|LINE|L1	14272.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	4.17983724641417	4.01806787575145	4.12212253019531	3.73787634748572	3.88305090109853	3.79671169306118	-0.904393668365406	0.0758419353013696	0.362539808419832
Merged-chr15-83130056-3	chr15	83129561	83130561	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-7260.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	7.36903451663299	7.17578852635778	7.01129116918299	7.23749297357304	7.59210914016438	6.93881817096911	0.145773256655875	0.606835295838172	0.884349416059017
Merged-chr8-71543820-3	chr8	71543294	71544294	+	798.888916	f1_balb.idr|f1_c57bl6.idr	intron (NM_028617, intron 3 of 8)	intron (NM_028617, intron 3 of 8)	864.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	3.48333349547253	3.53680019895012	3.54312388442983	3.40056594416674	3.0816868764042	3.50803399549774	-0.717826234674143	0.249302684548075	0.646251553365766
Merged-chr5-135145775-4	chr5	135145301	135146301	+	762.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3910.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	3.494067883298	3.43252702682929	3.39309039625143	3.42775550999846	3.53580471158571	3.8247932555012	0.567417996027849	0.334076384223188	0.724748007849347
Merged-chr5-105622121-2	chr5	105621621	105622621	+	777.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77848.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.52858362329658	4.99563551397953	5.11106190571941	5.34130477320105	5.49947920214071	5.17657449480686	0.227761571618561	0.553490715073183	0.862256710473478
Merged-chr6-86526661-4	chr6	86526167	86527167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-478.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	9.61267293652021	9.84154957766931	9.37194329790399	9.4968278859599	9.65327437253824	9.24892828496997	-0.196819127996614	0.393801731502506	0.771940960060713
Merged-chr8-120325603-2	chr8	120325103	120326103	+	891.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97373.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	2.41159444492897	2.30936577836858	2.45284263696489	2.23751345438612	2.23749947019203	2.19988532928112	-1.13105564782464	0.190115064906083	1
Merged-chr11-116146265-4	chr11	116145760	116146760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172571, intron 26 of 30)	intron (NM_172571, intron 26 of 30)	-7392.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	6.69928200048978	7.08637408209998	6.72869052824506	6.46847541833622	6.52545869281092	6.46140225214781	-0.583596435649842	0.0324821087639818	0.219145800685309
Merged-chr1-173933609-1	chr1	173933109	173934109	+	689.0	f1_balb.idr	intron (NM_001302649, intron 6 of 9)	MMERVK10C-int|LTR|ERVK	8883.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	3.81097195651249	3.96574267186585	3.66053655521744	3.13277092233202	3.538662187663	3.78232328570417	-1.06291471060189	0.106643861417814	0.435916169724877
Merged-chr5-123039199-4	chr5	123038670	123039670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029112, intron 3 of 4)	intron (NM_029112, intron 3 of 4)	7846.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	4.51934882053237	4.30191614097628	4.69451920437108	4.81444315929679	4.92407045726664	4.90754429426261	0.894813237682662	0.0312660881901757	0.214086756316243
Merged-chr17-81668187-4	chr17	81667684	81668684	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	70203.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.65710551213659	5.27052614272311	5.41109110246	5.53917014828677	5.32637757431096	5.95374333008863	0.3058295383225	0.412545557657766	0.784551818322662
Merged-chr11-48901543-2	chr11	48901043	48902043	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	609.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	7.43314406711555	7.34717378437038	7.32030211775537	7.50849708205002	7.85016786799792	7.49646692600621	0.391669102926838	0.103789558699974	0.429572877650473
Merged-chr10-117870691-2	chr10	117870191	117871191	+	670.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24717.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	3.14009367735056	3.66438181529886	3.3955040354277	3.4395225745559	3.13028092373066	3.467058791653	-0.269185559820309	0.682366845327502	0.915072334923495
Merged-chr18-58136241-5	chr18	58135745	58136745	+	890.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010181, intron 7 of 64)	intron (NM_010181, intron 7 of 64)	73681.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	3.9351375447311	3.98514583690804	3.62920757289419	3.95817953045099	3.95921346473644	3.97012457801578	0.284514033195561	0.588037530604743	0.876182349656829
Merged-chr7-31115093-2	chr7	31114623	31115623	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110252, intron 1 of 13)	intron (NM_001110252, intron 1 of 13)	203.0	NM_008281	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	6.59475534762495	6.82081020924809	6.55228466197269	6.82353286033782	6.77755507896875	6.6965776184634	0.158985807937027	0.540589928452327	0.856401971110652
Merged-chr15-79774530-4	chr15	79774050	79775050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-83.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	7.24669822108076	7.04801107302183	6.90061215821003	6.75817987393199	6.59750722399407	6.97279888301739	-0.46679674806113	0.0795722072831099	0.373079631690596
Merged-chr8-126597771-4	chr8	126597283	126598283	+	774.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4347.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	4.45348606958156	3.75349215611869	3.99473392222201	4.3794894075796	4.26196592117554	4.26080573424464	0.524430991225368	0.325687107645024	0.71817845131019
Merged-chr18-7610379-3	chr18	7609865	7610865	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	-2211.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.75843442499185	2.53728415138745	2.86811468322203	2.84004404850113	3.06462781875966	3.11468615772708	1.45615679347893	0.0548383259797622	0.30085703788699
Merged-chr11-109417672-4	chr11	109417143	109418143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8303.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	5.63666619746128	5.53157531789485	4.99259612082487	4.98051735180208	5.0178323903691	4.62949323829118	-1.08510872379684	0.00927093610681409	0.0955195705269672
Merged-chr18-32172255-3	chr18	32171756	32172756	+	667.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	9167.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	4.90152573396074	4.87985402656331	4.99342926567718	4.95511045819733	4.89039488296071	5.05754579404431	0.0911153399540404	0.808115748026298	0.954615579876099
Merged-chr13-30738652-4	chr13	30738148	30739148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10585.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.45454432622565	5.03149699000273	5.40804022815953	5.1088203034832	5.13016121068701	5.01899703969702	-0.442348204194104	0.236262745292669	0.632649498304448
Merged-chr6-72162374-4	chr6	72161887	72162887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39190.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	7.62447077214876	7.19726190621488	7.38747888365986	7.49347000016182	7.55573395915383	6.96324312035522	-0.0622312990642246	0.82498254073582	0.95862923400744
Merged-chr13-47014826-4	chr13	47014300	47015300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175340)	promoter-TSS (NM_175340)	50.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	5.53059406341629	5.62032491209822	5.0145101837492	5.48372047480287	5.20444164065514	4.96171101134462	-0.365970850963536	0.360343298318417	0.746569549293925
Merged-chr7-121073739-4	chr7	121073256	121074256	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	774.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	7.45626613348551	7.93328990386588	7.51593242297612	7.6992743891623	7.82019106988297	7.89982295528505	0.212973677925583	0.395492901594592	0.772842311340033
Merged-chr3-108911202-4	chr3	108910660	108911660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025845, intron 1 of 5)	CpG	569.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	8.9878800505035	9.25484187370909	8.54239148306299	8.80328335054863	8.98825179193407	8.78398309412422	-0.14291959113694	0.570183322129063	0.869072933274727
Merged-chr19-12801256-4	chr19	12800757	12801757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134152, intron 1 of 8)	intron (NM_134152, intron 1 of 8)	2678.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	6.94347751284207	7.05155170321769	6.92223215966764	7.31023773935374	7.25367785641941	6.84540895464804	0.281749892358162	0.279145940227386	0.67666420190061
Merged-chr15-25843721-3	chr15	25843224	25844224	+	899.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	426.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.56234362676413	4.19506695281531	4.23282423716006	4.20197869446792	3.91719779806463	3.95455467315601	-0.878782692455174	0.0771526724535146	0.366150662722412
Merged-chr6-37601273-4	chr6	37600784	37601784	+	946.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71111.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	3.43363622405304	3.81456214179674	3.54922566644441	3.90419773861942	3.44595709754671	3.72910072768907	0.305793268674698	0.608517706713566	0.885006356798728
Merged-chr6-50252878-4	chr6	50252365	50253365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018769, intron 1 of 9)	MLTR11B|LTR|ERVK	8904.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.67275238132117	5.73009538807827	5.39828980390875	4.98160972491536	5.35364175053196	5.52047549639732	-0.608320551997331	0.0955133505587776	0.411968982629402
Merged-chr11-32537336-4	chr11	32536851	32537851	+	831.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	4085.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.75103490504617	6.65441631847067	6.85891059807792	6.95872421354926	6.52412442687707	6.67352117308912	-0.0363797193663653	0.894084003588624	0.975337673545585
Merged-chr4-135947133-4	chr4	135946658	135947658	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357529)	promoter-TSS (NM_001357529)	-248.0	NM_001357529	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	8.36336489062568	8.59053580515053	7.97797795707251	8.55517499297059	8.60306491904851	8.00174912227814	0.110446815198275	0.690287623370722	0.917799022980422
Merged-chr3-31083368-2	chr3	31082868	31083868	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-11690.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	5.71136869761858	5.39943354179836	5.65780569263876	5.86073575667395	5.81110110407507	5.91915175698222	0.488615005354646	0.12451069684153	0.472166897401788
Merged-chr2-6718349-4	chr2	6717850	6718850	+	857.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3312.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.71414855411432	5.86045721381469	5.94865013043767	5.81565237823218	5.95700680146441	5.91651083601274	0.107596465964916	0.722198404102488	0.92872455507539
Merged-chr2-59427420-4	chr2	59426918	59427918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40736.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.44261989339888	4.59587095093078	5.00624496148733	4.16610298813178	4.22681281115188	4.24426782139399	-1.2237173886424	0.00919993125652781	0.0950233217469173
Merged-chr8-11340496-4	chr8	11339999	11340999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-27673.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	4.95288330531849	4.92540311896995	4.85993228990437	4.53056959548252	4.23065063199566	4.4861466506212	-1.21084072241575	0.00392005064910203	0.0511654234369383
Merged-chr18-23876784-2	chr18	23876284	23877284	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	72814.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.10782826215234	3.306001968489	3.34051691992184	3.25677363224008	3.03249968656079	3.35708738720791	-0.155124350795042	0.809948834454365	0.954862887748354
Merged-chr13-91640423-4	chr13	91639927	91640927	+	939.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-101094.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	5.65652858329695	5.46810930689244	4.79929347415424	4.64946574795772	4.53385624486134	4.50329815849239	-1.75251304531143	7.15563131834201e-05	0.00212949131164736
Merged-chr9-106204685-4	chr9	106204196	106205196	+	933.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011876, intron 1 of 8)	intron (NM_011876, intron 1 of 8)	1588.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	4.1143263611317	4.01305148940515	4.32841996980515	4.41121173045212	3.87722776494308	4.39513588782523	0.252124627784834	0.623350918005624	0.891380356166716
Merged-chr8-94857460-4	chr8	94856966	94857966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009090)	promoter-TSS (NM_009090)	16.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	7.14864954273887	7.29033461946986	6.70838665411014	7.26721862078494	7.09346019509823	6.6252785427421	-0.0757127656810894	0.80408550910265	0.953557286986578
Merged-chr5-76244575-3	chr5	76244081	76245081	+	731.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007715, intron 11 of 22)	intron (NM_007715, intron 11 of 22)	58921.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	3.41511543736432	3.44404860029363	3.70350188461976	3.50785213741706	3.85174979595645	3.50858427113301	0.428305790482427	0.468590005079868	0.818673566064062
Merged-chr18-36482214-4	chr18	36481713	36482713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27718.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	5.5160140274364	4.96550455092528	4.95498725181578	4.45044142625241	3.91037184411256	4.40394807546278	-2.18895631068352	7.14627197050195e-06	0.000300620322609467
Merged-chr8-94187514-4	chr8	94187012	94188012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8423.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	5.04166874587166	4.83754539889345	4.62632817186709	4.62876984883635	4.69921045569552	4.85204394074082	-0.299170698148586	0.465982037629027	0.817283042094577
Merged-chr4-99177146-4	chr4	99176637	99177637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16797.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	6.58912902518052	6.69324367633336	6.86837278939346	6.98042417295336	6.86314100181841	6.79446528929487	0.263500974143789	0.303240527574824	0.69988332222588
Merged-chr7-43408227-2	chr7	43407727	43408727	+	819.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-53.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	2.43164660087992	2.53963603195126	2.64028352811788	2.62054237014558	2.4917996333797	2.83267216559059	0.64298900737114	0.414242922550751	1
Merged-chr4-144902363-2	chr4	144901863	144902863	+	920.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	MLT1D|LTR|ERVL-MaLR	9226.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.3555081350236	4.56077645261741	4.92470429204544	4.71187436029008	4.42924403388503	4.37015027447267	-0.268005917218817	0.561472644067491	0.865407801976397
Merged-chr2-158143439-3	chr2	158142875	158143875	+	894.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	3017.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.31105802528281	4.84064695170598	5.26703972409937	5.34128007575263	5.01247773694926	5.41871995728357	0.219902096642682	0.575761385431275	0.87137539535607
Merged-chr5-30959404-3	chr5	30958903	30959903	+	884.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016703, exon 2 of 9)	exon (NM_016703, exon 2 of 9)	924.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	6.05273711080714	6.13598519445739	5.85514991792361	6.33542095607119	6.56270228849748	6.24480604421938	0.615527575898571	0.0363735362079818	0.234672342466756
Merged-chr6-31284628-4	chr6	31284143	31285143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040262, intron 2 of 5)	intron (NR_040262, intron 2 of 5)	64292.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	5.68172032882937	5.95994319017166	5.52639390580442	5.39306417617413	5.53545067497265	5.70028573394691	-0.374647931712726	0.268552860643453	0.665755301886631
Merged-chr15-63601664-4	chr15	63601134	63602134	+	684.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122026.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.12436999071588	2.95421579387756	3.22393717855394	3.14497822262989	2.95441166938457	3.12577260059618	-0.119638994357088	0.85723504066234	0.966724672875312
Merged-chr12-102757881-4	chr12	102757383	102758383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025666)	promoter-TSS (NM_025666)	-73.0	NM_001142938	100233175.0	Mm.291222	NM_001142938	ENSMUSG00000091931	Gon7	-	GON7, KEOPS complex subunit homolog	protein-coding	6.76768611835436	7.06033717173008	6.5710564207621	6.82984786303515	6.71697278862153	6.87144049835005	-0.0353469382357018	0.896885775261137	0.97587199430405
Merged-chr12-4548822-4	chr12	4548325	4549325	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24712.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	2.91797054275617	3.00807117760972	3.0991510926325	2.98482833985031	2.86911914712554	2.74231652384933	-0.650467813768162	0.358238982595707	0.744602774931622
Merged-chr8-25017117-4	chr8	25016630	25017630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007404)	promoter-TSS (NM_007404)	-81.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	8.12670189432583	8.36587513398377	7.85457840798241	8.10748069217845	8.34965233090214	8.02257621931679	0.046029477281551	0.851741784621995	0.96531854415899
Merged-chr9-50906165-2	chr9	50905665	50906665	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	49241.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.65283717340703	3.43618744199229	3.5382374109404	3.22428610504172	3.31230899307589	3.75753565550537	-0.369281989544467	0.554099057205635	0.862623004639396
Merged-chr6-59185485-4	chr6	59184986	59185986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23384.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	5.6614440581264	5.57751013707874	5.38643373976262	5.16799181036092	5.051296321345	5.00561757864095	-0.948114252092613	0.00674874992895638	0.0761114101502578
Merged-chr1-183321937-2	chr1	183321437	183322437	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181732, intron 8 of 9)	B4A|SINE|B4	-24644.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	4.09190820682558	4.01421806252926	4.31601681059428	4.19166081611376	4.05467359293365	4.01870561721759	-0.132889707478287	0.784259469457146	0.947513080979134
Merged-chr14-31130109-2	chr14	31129609	31130609	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1179.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	3.21152741807131	3.20666034542097	2.9924225127718	3.12321961444473	3.11347616783972	3.35393515798995	0.214389771437669	0.744031974005982	0.935879486357749
Merged-chr12-78226443-4	chr12	78225933	78226933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-222.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	8.35648267525347	8.39088640749291	8.16152128528648	8.53192178938894	8.61617190933183	8.18269206465243	0.213156978659809	0.353732358731598	0.740929143625235
Merged-chr8-68392746-4	chr8	68392230	68393230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	24271.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	5.66783996678842	5.6961515825214	5.75823710567475	5.0817570030058	4.8179460065207	5.2683956116374	-1.29820718399253	0.000258570461811697	0.00617718374574439
Merged-chr4-40279442-4	chr4	40278934	40279934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033305)	promoter-TSS (NM_001033305)	-13.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	7.06524836651213	7.08913168646355	7.26420216474445	7.13955611366263	7.20772231344666	7.25356800790481	0.0948468259707401	0.688092465336258	0.917193226920892
Merged-chr11-82780735-2	chr11	82780235	82781235	+	669.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291247)	promoter-TSS (NM_001291247)	307.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	6.81945126419518	6.95678184395679	6.86220682699474	7.16690730890243	7.26481521151116	6.99232169373254	0.413129451572035	0.0932010013529031	0.40657919757719
Merged-chr12-111943431-2	chr12	111942931	111943931	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_029464, intron 2 of 2)	intron (NR_029464, intron 2 of 2)	1051.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	4.03658999336921	4.40172817771942	4.47176205919594	4.23293918853775	3.8760204757621	4.33403419848788	-0.436057055517034	0.390317230463962	0.769585097056154
Merged-chr2-5713452-4	chr2	5712949	5713949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	1313.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	7.64724984741407	7.64332093719366	7.53041248696048	7.46349550987458	7.76800650778758	7.45371624718191	-0.0471103938361924	0.841309332800304	0.962909549034125
Merged-chr17-34952661-8	chr17	34952131	34953131	+	973.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027943)	promoter-TSS (NR_027943)	-160.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	7.24646989128617	7.2501353863211	7.00669450957509	7.04038516457133	7.58560740792589	7.11865602821583	0.156488555392692	0.569079588671288	0.8688875602138
Merged-chr4-130781779-2	chr4	130781279	130782279	+	708.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159604)	TTS (NM_001159604)	-10758.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.19414314398269	3.23031231472158	3.6460162279817	3.4660137799124	3.13718877856367	3.17855693241446	-0.381339911605362	0.562842532473157	0.865755360453189
Merged-chr7-114292130-4	chr7	114291627	114292627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16011.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	6.69435029394368	7.17696760757565	7.09917585782607	7.1701182275302	7.56471735171691	7.32237501245283	0.541414362018089	0.0488332235539097	0.280712598651034
Merged-chr1-191122034-3	chr1	191121485	191122485	+	835.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	23571.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.51217865951848	5.12002106014615	5.37497246083122	4.98512459452362	5.29309742484791	5.43770053481683	-0.192597994914831	0.607791946265247	0.884733778818772
Merged-chr19-46045912-4	chr19	46045432	46046432	+	946.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113408)	promoter-TSS (NM_001113408)	-621.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	6.62840433802004	6.94730330098942	6.85017799744818	6.63162581128185	6.79836102409944	7.09128958421003	0.0509482624682717	0.853776320066895	0.965808636142887
Merged-chr16-77019709-1	chr16	77019209	77020209	+	622.5	f0_balb.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	5640.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	3.96883034559838	3.82454507455885	3.83546782745676	3.94535937387502	3.60052538933523	4.14032053124793	0.0777070348083806	0.886896261089509	0.973794308941933
Merged-chr18-54970144-3	chr18	54969619	54970619	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	20061.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.86343460156157	4.74449683126877	4.64712200403051	4.27069045135499	4.17197995425429	4.63461457356622	-0.990925754749498	0.0263057421475696	0.19257858460452
Merged-chr13-9094345-4	chr13	9093855	9094855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	(CGGGG)n|Simple_repeat|Simple_repeat	474.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	8.93239925390772	8.90768583927701	8.54733976573549	8.74639740946222	8.64020014255714	8.57566536611721	-0.214922300064716	0.326629320966791	0.718904180373092
Merged-chr7-28384545-2	chr7	28384045	28385045	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026042)	TTS (NM_026042)	-5317.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	7.23512892857697	7.03334408966175	7.30683866273523	7.18488121769858	7.48133919826426	7.31982103350531	0.218491636854231	0.375061429282665	0.758377211092613
Merged-chr10-96181550-4	chr10	96181035	96182035	+	902.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-44672.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.54651434855771	3.39912789153831	3.69391468165345	3.31661650828595	3.37875963887509	3.98944965583751	0.148049168477499	0.815694382704769	0.956465653447018
Merged-chr4-132039043-4	chr4	132038525	132039525	+	825.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	LTR104_Mam|LTR|Gypsy	10053.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.41735396601237	6.51347861896782	6.39940993822547	6.35445628965689	6.39169121756391	6.47722064614854	-0.0680309104250015	0.797640155253392	0.951799370596145
Merged-chr10-88409982-4	chr10	88409497	88410497	+	906.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 2 of 20)	MLTR25A|LTR|ERVK	30585.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	3.52356685173096	3.63461890117682	3.45705372206997	3.64152454181453	3.55069366507563	3.79258533592201	0.397931410921263	0.480838198336008	0.824838028433526
Merged-chr4-82859658-4	chr4	82859141	82860141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026647)	promoter-TSS (NM_026647)	32.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	6.29847401254636	6.21634726954762	6.03827722458522	6.70365833633429	6.61716685787282	6.72698194411603	0.782539869945236	0.0039934200708522	0.0518384551100578
Merged-chr9-62810790-3	chr9	62810291	62811291	+	689.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010193, intron 1 of 1)	intron (NM_010193, intron 1 of 1)	857.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	5.89209320464002	5.9016038019004	5.52589961364588	5.67499613614809	5.41784377168415	5.37107969638349	-0.55808016133417	0.0994632632900465	0.420556898817938
Merged-chr4-43251489-1	chr4	43250989	43251989	+	600.0	f1_c57bl6.idr	intron (NM_001081413, intron 26 of 39)	intron (NM_001081413, intron 26 of 39)	-15670.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	4.07331988314525	3.82349384429531	4.0476944375916	3.6201864487485	3.60090671106566	3.93004109200102	-0.859001210244038	0.112042786261874	0.447075056791733
Merged-chr16-45742912-4	chr16	45742412	45743412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272070)	promoter-TSS (NM_001272070)	43.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	7.53975198194995	8.089161804628	7.35588114832655	7.38998192436987	7.43548600348859	7.18231721075952	-0.532940330891151	0.061490477117166	0.321691268152477
Merged-chr11-94521467-4	chr11	94520965	94521965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170671)	promoter-TSS (NM_170671)	37.0	NM_170671	104601.0	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	6.25660163764295	6.28440446482684	5.64257556778048	6.17766878287605	6.05319917791535	5.51563161520665	-0.253888237497694	0.492140064783497	0.830934592569652
Merged-chr9-107571633-2	chr9	107571133	107572133	+	742.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_010489, intron 3 of 3)	intron (NM_010489, intron 3 of 3)	2470.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	2.87177507270426	2.67393194815141	3.00799218747042	2.71156045152745	2.70766236777174	2.5916917586164	-0.945841040347881	0.214788494911378	0.607977993080214
Merged-chr15-51701592-2	chr15	51701092	51702092	+	708.458374	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	163869.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	2.24162882722083	2.24595990889191	2.4625302360635	2.18364458512034	2.20618456458064	2.5359718314625	-0.0227335727164044	0.979219108448791	1
Merged-chr16-18248096-3	chr16	18247590	18248590	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080999)	promoter-TSS (NM_001080999)	604.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	6.50834102044725	6.98922399772431	6.82083456398836	6.67933991136167	6.93982086224108	6.77385482462371	0.0270247397518278	0.922827509894162	0.982621045978137
Merged-chr2-133512825-4	chr2	133512309	133513309	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39350.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.11762043585944	3.12293350086538	3.2265278815232	3.15919380304053	3.03299475627539	3.29749227664464	0.03071350084345	0.961860010645969	0.990684873115088
Merged-chr3-97297291-4	chr3	97296757	97297757	+	826.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69893.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	4.84250137357202	4.81250203320183	5.22344119662471	5.09870429809965	5.05298600100457	4.76605537490822	0.0597419757598911	0.881854189725443	0.972938155767876
Merged-chr19-6870968-4	chr19	6870470	6871470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-12759.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	7.14005731857727	6.8657010534565	7.21340770927378	7.71965583021954	7.87022456131562	7.31834974126427	0.868722774407348	0.00114373160319971	0.0200006417243163
Merged-chr11-69036979-2	chr11	69036479	69037479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8658.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	4.68108255475553	4.58910076673912	4.95324873091156	4.94090935311336	5.19027819720046	4.91071801849005	0.646355784813947	0.106478425147095	0.435652102062224
Merged-chr8-94385130-2	chr8	94384630	94385630	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-1299.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.73332056690371	2.83640499644597	2.91679965182952	2.73058538268734	2.80014005296209	2.68235220361686	-0.4450852064954	0.541051597098378	0.856688194161135
Merged-chr17-45571506-2	chr17	45570908	45571908	+	745.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 3 of 10)	intron (NM_008302, intron 3 of 10)	1853.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.00716307603534	3.81167195080255	3.9567937014834	4.02507058614855	4.22783690792874	4.30049050644104	0.762732544221618	0.122369802483966	0.467865024357205
Merged-chr10-60934511-4	chr10	60934019	60935019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	3613.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	5.7363162159858	5.67671667576548	5.71471361645016	5.95329468939527	5.39446479197345	5.61428951248176	-0.0680059059948724	0.842060728504954	0.963002495523594
Merged-chr15-3978421-2	chr15	3977921	3978921	+	714.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134099, intron 1 of 6)	B2_Mm2|SINE|B2	1152.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	3.4922539704608	3.74906227630782	3.53583676002236	3.6437358315456	3.41060163830636	3.4956258262826	-0.296394269391633	0.608742523680077	0.885006495769744
Merged-chr2-165982703-4	chr2	165982202	165983202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9935.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	8.17783067284367	7.95780766273251	7.8961199801521	8.02110181059882	8.40125433450111	7.91996425833185	0.169612759205295	0.490366364018707	0.830042606694236
Merged-chr15-51448495-4	chr15	51447920	51448920	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52810.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	4.68583925776867	4.63880029551001	4.85913260924532	4.66651658148192	4.45870215135123	4.35575371665465	-0.532617590924675	0.211513135609092	0.603945120913907
Merged-chr5-54038818-2	chr5	54038304	54039304	+	655.0	f0_balb.idr|f0_c57.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	40281.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	2.42180674751443	2.35311636597163	2.5305122809212	2.41128528134167	2.39371487209592	2.28046169368923	-0.436201375137424	0.598310322198844	1
Merged-chr3-95893869-4	chr3	95893390	95894390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-31.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	5.91242035541742	5.84915173801248	5.91584961264992	6.16599837321278	6.09101270478743	6.37084558870482	0.541407968713614	0.0642867289735485	0.330379231945589
Merged-chr19-55896036-2	chr19	55895536	55896536	+	638.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	715.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.10300443304738	2.95633443308068	3.42631230435731	3.00922786731885	2.9603140443413	3.39496509979128	-0.17211721725639	0.80610428207311	0.954102910475772
Merged-chr7-75668598-2	chr7	75668098	75669098	+	825.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-179740.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.18926270895324	5.12302375392015	4.80473075710241	4.70133619592801	4.51415529294203	4.53208586796236	-1.07949258024758	0.0081465324477786	0.0871505106601648
Merged-chr8-4239549-1	chr8	4239049	4240049	+	745.0	f1_c57bl6.idr	promoter-TSS (NM_001291778)	promoter-TSS (NM_001291778)	-556.0	NM_001291783	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	5.71429547371717	5.98830367532782	5.70050006786855	6.13865951427363	6.09987039390225	5.91981567852185	0.429932247239511	0.162681908483477	0.536188662408322
Merged-chr14-27508457-4	chr14	27507955	27508955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177111)	promoter-TSS (NM_177111)	5.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	5.09896017532589	5.29878247225099	5.24969670875388	5.19813594030611	5.06965449127388	4.7652984245165	-0.383019935776089	0.313611524731568	0.708121563861612
Merged-chr5-150176797-3	chr5	150176296	150177296	+	969.4166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83134.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.27992802492401	2.42713788596688	2.51888342905089	2.45655141012069	2.43671245806595	2.59234728286286	0.522858505781294	0.519683607739963	1
Merged-chr15-5576806-4	chr15	5576294	5577294	+	955.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045274, intron 2 of 4)	intron (NR_045274, intron 2 of 4)	80476.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	3.40047069548312	3.26209606654698	3.32252229557852	3.51261818603996	3.59865072944063	3.45133044960531	0.753391507650198	0.201551416058724	0.591047651513792
Merged-chr10-44625801-4	chr10	44625289	44626289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167041.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.53532679738463	6.37876474814916	6.30898940638567	6.32915693564546	6.49352562046901	6.30870470026338	-0.048446106951381	0.859943880295934	0.967441103100897
Merged-chr19-7340740-4	chr19	7340264	7341264	+	716.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	1096.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	5.90911227687152	6.22021882993369	6.38451857719465	6.16650047783621	6.15323376219503	6.23618505390457	0.00958054157094509	0.974464540170732	0.994276686350905
Merged-chr11-116101773-2	chr11	116101273	116102273	+	917.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8462.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	5.99742563145723	6.1266971361312	6.17626096383189	6.021695670499	6.34380488533775	6.13080382863998	0.139006367848674	0.635949023270387	0.896845407499567
Merged-chr17-45563388-3	chr17	45562877	45563877	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-559.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	5.70004468156026	5.50165115532725	5.8082524610782	5.38840457027459	5.52194346353089	5.82194908692558	-0.165248173748277	0.626177558922924	0.892819497179456
Merged-chr7-139377593-4	chr7	139377081	139378081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11528.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	5.34700449326811	5.40683978152593	5.398698205601	5.37717357873521	5.35913053795491	5.431947122417	0.00585401259740245	0.985932959701269	0.996983483442674
Merged-chr1-152090339-4	chr1	152089830	152090830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197990)	promoter-TSS (NM_197990)	-10.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	3.82628092059448	3.2023470806863	3.49586959923755	3.62477198995177	3.30033002638968	3.14348421171072	-0.595001324632752	0.385697999503257	0.766660116639998
Merged-chr19-10297499-2	chr19	10296999	10297999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7378.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.65159322140144	4.6570598202099	4.82752065777806	4.05665980376501	3.92085519565778	4.26053512311262	-1.7037687627291	0.00024665776928291	0.00593862837572118
Merged-chr9-61705810-4	chr9	61705318	61706318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	208692.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	5.88793403908502	6.01954772098982	5.47110814759839	5.62119881966721	5.64638668767906	5.56574115075621	-0.388755838641363	0.247216330512344	0.644145276280485
Merged-chr5-123714857-3	chr5	123714356	123715356	+	781.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	6188.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	5.70969773409846	5.80885211461418	5.65240182337005	6.37884838827029	6.4167997604777	5.99954710805856	0.983331068154472	0.00141008479971798	0.02361246448278
Merged-chr3-126628123-3	chr3	126627628	126628628	+	743.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31177.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.26585130732711	7.55469584633626	6.87973616250214	6.88299947329175	7.05277757141699	6.71214631377758	-0.566896452632522	0.0496507707343345	0.283512306564816
Merged-chr9-66359094-3	chr9	66358610	66359610	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	8660.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	6.54758007129197	6.98778465789565	6.26745440762281	6.6462528638093	6.7880057235503	6.60046994777885	0.0547831773797033	0.858297245385612	0.966883574654742
Merged-chr14-8081019-4	chr14	8080501	8081501	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 1 of 5)	intron (NM_025938, intron 1 of 5)	688.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	7.34588433776658	7.78633009540342	7.54741392653896	7.43380784155626	7.60273031880781	7.23463097166064	-0.198787415394696	0.440426354659033	0.801780823910316
Merged-chr19-37172007-2	chr19	37171507	37172507	+	967.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	(CA)n|Simple_repeat|Simple_repeat	-1836.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	3.7504220781499	3.65940183117396	4.2663577905244	4.20285083930327	4.23455361501645	4.1137035408401	0.817344271875561	0.127969955692565	0.478395366756535
Merged-chr3-27196007-2	chr3	27195507	27196507	+	917.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	13003.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.12589942389447	4.87610422448663	5.0070188086121	4.64122731845337	4.67720581837938	5.13615947392856	-0.402319875447611	0.32725913193865	0.719396012109034
Merged-chr17-46783640-2	chr17	46783140	46784140	+	564.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-984.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	3.40754085818386	3.70741817144879	3.78053077535876	3.49324737083224	3.51286652148028	3.75212013659076	-0.182056949314425	0.753545457325344	0.938563718495545
Merged-chr7-79846758-4	chr7	79846264	79847264	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008486, intron 1 of 20)	intron (NM_008486, intron 1 of 20)	1446.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	3.63551283908343	3.20645439452776	3.44295410380106	3.68839278624128	3.41557285885824	3.21527986174876	0.0565638736603052	0.930362462564066	0.984492513131011
Merged-chr9-116169227-2	chr9	116168733	116169733	+	676.5	f0_balb.idr|f1_balb.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	6130.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.07419816684647	4.22492355644786	4.06959876792248	3.64001255096536	3.53115307901866	3.37120800381932	-2.01513787172766	0.000495914792623881	0.0104439580016826
Merged-chr17-56990265-4	chr17	56989782	56990782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017393)	promoter-TSS (NM_017393)	18.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	6.34735306940118	6.55971674429876	6.78835113442871	6.68924029017658	6.49708941473645	6.23293415294812	-0.122702614599194	0.678007326629062	0.913302826194187
Merged-chr9-105131807-4	chr9	105131317	105132317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-12.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	7.74554428632843	7.73751680444648	7.55484427789531	7.87811614411518	7.78106714867338	7.25230730730592	-0.0153641663771448	0.953375804549866	0.989446911725587
Merged-chr9-32539436-4	chr9	32538954	32539954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1998.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.6642374509424	5.77160071875141	6.02831244758244	5.9733533793648	5.81091803293843	6.29756421491177	-0.309667400392528	0.408450249517269	0.782049987616386
Merged-chr1-93444924-3	chr1	93444425	93445425	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133808, intron 1 of 27)	intron (NM_133808, intron 1 of 27)	776.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	7.88769225801685	7.89342695635527	7.70763448895708	7.57187087836664	7.5417912359807	7.78994622863241	-0.292902676428934	0.194911377091994	0.582591632483319
Merged-chr3-15126859-3	chr3	15126345	15127345	+	604.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	155644.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	3.99143674267546	3.86681966001644	4.18525826852912	3.40749476967754	3.34528301784301	3.69816706959866	-1.85517296258652	0.00148888781267799	0.0246003528827065
Merged-chr19-43524644-4	chr19	43524127	43525127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-22.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	8.09122100861989	8.06982341363986	7.64318617137863	8.00716862261785	8.19737405472104	7.90389083893955	0.124684762226684	0.609609377544686	0.885300284460167
Merged-chr9-18473109-2	chr9	18472609	18473609	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028160, intron 1 of 7)	intron (NM_028160, intron 1 of 7)	450.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	5.40482946079771	5.68329183033946	5.5090437408195	5.43277546309528	5.70851301718581	5.51373480046034	0.0451788104023473	0.893213516715485	0.975210713351106
Merged-chr9-62962654-2	chr9	62962154	62963154	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	18225.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	4.17973642864448	3.97433328555978	4.00397026046403	4.11802955588691	3.99723928598835	4.02395314419257	-0.034897594256165	0.942993827349507	0.987224841294637
Merged-chr4-53079376-9	chr4	53078981	53079981	+	792.351868	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 18 of 49)	intron (NM_013454, intron 18 of 49)	67601.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	5.33764774633024	4.98781204710325	5.35841649196841	5.46294493511491	5.94191630747072	5.1165368863712	0.643795514037612	0.112327977833173	0.447656669011208
Merged-chr4-153975134-4	chr4	153974665	153975665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007859)	promoter-TSS (NM_007859)	-84.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	6.27698373588605	6.73599532760381	5.93376430264622	6.1753385530262	5.85352299130821	6.22518821459294	-0.470894356043074	0.171483500737345	0.549560896986326
Merged-chr2-167641215-2	chr2	167640715	167641715	+	576.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9210.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	2.26051713198745	2.26083421780985	2.17401706146296	2.36519526936845	2.15843525540811	2.51058385884396	0.758910565089122	0.387185123734986	1
Merged-chr7-35117170-3	chr7	35116646	35117646	+	952.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2147.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.50292811290474	5.42066025567986	4.88405032346818	4.56206978247832	4.43960000723049	5.25917071930384	-1.06932703398033	0.023456928449555	0.179443238248651
Merged-chr18-61109691-2	chr18	61109191	61110191	+	997.7000119999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_001037859, exon 3 of 22)	exon (NM_001037859, exon 3 of 22)	4119.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.13005887607441	4.68433440611753	5.76063122239571	5.52574216426739	5.47284866107323	5.72855046480745	0.609040553298051	0.16642068802422	0.541680981423849
Merged-chr4-152138697-4	chr4	152138190	152139190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207687, intron 4 of 15)	CpG	-2365.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	5.12426187724973	4.92927198200247	5.22787725169615	5.21810050878854	5.11791042379041	4.82970679776024	-0.0383553583773413	0.920235282820644	0.982308369633614
Merged-chr3-51396676-4	chr3	51396183	51397183	+	881.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026358)	promoter-TSS (NM_026358)	-136.0	NM_026358	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	2.67428377662371	2.53647075430264	2.57433469331859	2.72584260551536	2.66089851264007	2.83506253840047	0.77903950184329	0.301718561744276	1
Merged-chr16-3744472-1	chr16	3743972	3744972	+	1000.0	f0_balb.idr	exon (NM_148924, exon 1 of 6)	exon (NM_148924, exon 1 of 6)	373.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	8.61901342312174	9.08157163917123	8.65687964581666	8.69883792492101	8.99503285915506	8.59497923679113	-0.0393035975245219	0.872511347873974	0.970261003150518
Merged-chr11-63788222-4	chr11	63787687	63788687	+	959.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134097.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	5.9775318429335	5.64760026181193	5.92395804706904	5.91341088479717	5.98918521483577	6.03047615084729	0.217262073299291	0.478837703805205	0.823902254052681
Merged-chr9-120915294-4	chr9	120914781	120915781	+	883.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040742)	promoter-TSS (NR_040742)	-31.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.70706089610729	2.80541081173115	3.14137915100401	2.4168436621801	2.34483997856049	2.57714293793425	-2.90111002503118	0.00165413992235687	0.0266894850997616
Merged-chr10-83353980-4	chr10	83353435	83354435	+	863.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6286.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	2.82446009309614	2.65059342358272	2.80065780052106	3.07929215939278	2.85814441515307	2.93666050798612	1.00839260892173	0.161091449931604	0.533730085446718
Merged-chr5-90695544-2	chr5	90695044	90696044	+	953.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55017.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.43174404458419	5.71686316731594	5.68538904640646	4.89540513760995	4.4118539034668	5.2548808842461	-1.49752593995321	0.000453240921116498	0.00972994596601175
Merged-chr5-144283812-4	chr5	144283331	144284331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025833, intron 7 of 13)	Kanga2_a|DNA|TcMar-Tc2	6770.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	4.96385033285737	4.653722876107	4.44715714625866	4.62950229438895	4.40693227136105	4.72566273367605	-0.307878027023742	0.487488888914478	0.828458303762018
Merged-chr11-21082908-4	chr11	21082394	21083394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.26858609147231	5.39305537129214	5.2650251733187	5.29868600982113	5.30350996440508	5.32874863241389	-0.00881670712151346	0.979319649419818	0.995221944653849
Merged-chr10-93256904-4	chr10	93256408	93257408	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	54251.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	5.40626591356307	5.30291981548837	5.46053069564627	5.36126108265383	5.01929628432449	4.88222746792291	-0.563766288717249	0.129969075877849	0.482173945088832
Merged-chr8-31033534-3	chr8	31033049	31034049	+	676.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55978.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	2.52038158233109	2.60328299457023	2.71961971655182	2.75948636917254	2.786223439205	3.19174028234756	1.62525566171211	0.036610673482753	0.235471973344122
Merged-chr2-157373897-4	chr2	157373396	157374396	+	856.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	MARNA|DNA|TcMar-Mariner	6302.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	4.47630661565379	4.56451890402543	4.36514947310279	4.32650172442511	4.26094082726318	4.24893345203744	-0.514589634686683	0.245078880643863	0.642381314494918
Merged-chr11-106033543-3	chr11	106033041	106034041	+	942.0833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037712, intron 12 of 12)	IAPLTR1_Mm|LTR|ERVK	-3331.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	3.54685778140938	3.39817049454121	3.71527819822292	5.06685589920897	4.84682923087896	5.75186844721082	5.86511647294886	3.8625354378472e-12	6.70968368919394e-10
Merged-chr7-19818559-4	chr7	19818037	19819037	+	918.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	4218.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	4.94502146984674	4.88983755759125	4.6062536067121	5.21862593314692	5.13752196046772	4.99967390254485	0.628220328132089	0.106663417116589	0.435916169724877
Merged-chr13-51401363-4	chr13	51400860	51401860	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7258.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	6.75884413271203	6.78022118958327	6.90816733467077	6.78669851577601	6.76272512711002	6.55872247295714	-0.155268532343428	0.543110831269368	0.857486639982385
Merged-chr10-80603770-2	chr10	80603270	80604270	+	894.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	888.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	6.95914832333203	6.84954988489929	6.91891322100856	6.90242326297195	7.14835470107414	6.81480626918588	0.0979456944214234	0.700125299261243	0.92088373406885
Merged-chr16-92825398-4	chr16	92824912	92825912	+	988.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	662.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.48198211814731	8.87481882785192	8.10620299627864	8.49643162335003	8.75993466538383	8.23258803530454	-0.0193063979633396	0.945217236838493	0.987875414328125
Merged-chr13-92274657-4	chr13	92274142	92275142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311120, intron 14 of 23)	intron (NM_001311120, intron 14 of 23)	-80141.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	4.95195999409315	5.38240212603555	4.80930133597601	4.59985678675906	4.85198986355478	5.09305787859827	-0.483272788768186	0.258858360993779	0.656379293054102
Merged-chr8-83656352-1	chr8	83655852	83656852	+	631.0	f1_balb.idr	intron (NM_018771, intron 1 of 6)	RSINE1|SINE|B4	3674.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	3.85407953855636	3.97482660720061	4.38252952448932	4.15696120713739	4.27709713470802	4.60036031541178	0.746275298333308	0.144967465090673	0.507853382341718
Merged-chr3-121548268-4	chr3	121547753	121548753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15909.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	6.68358405755015	6.74696555032158	6.16745496922474	6.65807380918219	6.78880531300787	6.65941801771143	0.21181736529651	0.468339926812534	0.818547995183628
Merged-chr13-119613864-3	chr13	119613384	119614384	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9935.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.43274098384244	4.28882020365527	4.19669708873018	3.88918439395438	3.86395657045517	4.07669350392948	-1.08682248744242	0.0255598321384249	0.189518031406905
Merged-chr4-40723863-2	chr4	40723363	40724363	+	602.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_029594)	TTS (NR_029594)	933.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	5.00521939301551	5.13564384259727	5.00186018100298	4.70310036112616	5.04695598116433	5.22993683150601	-0.096902688227709	0.805090187347361	0.953787743121181
Merged-chr15-50696124-4	chr15	50695588	50696588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	192961.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.18366384579916	5.05798110796925	5.51004906955757	4.57436455592551	4.50609945548501	4.6380307938566	-1.53071977218017	0.000168014359006039	0.00435078379031925
Merged-chr1-163975285-4	chr1	163974788	163975788	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19508.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	3.40345012966526	3.14755552383265	3.07173231417301	3.49606787430171	3.43996364573361	3.55428877365471	1.06777482714878	0.093849061350047	0.408098365287193
Merged-chr3-98060038-4	chr3	98059530	98060530	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	46492.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.90273371193365	4.95952826686	4.83157988490116	4.70040410482093	4.99517839911974	4.74035238258734	-0.162778590308651	0.681052116936431	0.914561666575965
Merged-chr2-25423265-4	chr2	25422782	25423782	+	918.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	40.0	NM_001289456	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	5.31072119358805	5.32129749121916	5.67918582797297	5.62876860787516	5.45110418685112	5.3786539629845	0.109895893476667	0.751667040206146	0.93795493658668
Merged-chr17-24007130-4	chr17	24006629	24007629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9029.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	7.20941394499507	7.10127457975873	7.04568096860416	7.26774626368775	7.27911731868777	7.09020377964197	0.145316513975711	0.541342989442538	0.856823485677174
Merged-chr3-88608977-2	chr3	88608461	88609461	+	676.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7246.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.93665406723509	5.25458544092221	5.09142606473784	5.13624883614773	5.19106228955374	5.08676443956754	0.0812536238395217	0.82511329349822	0.958708755759778
Merged-chr1-182368956-3	chr1	182368460	182369460	+	973.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27354.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	3.72681875309382	3.74196082945268	3.42417918195235	3.73347950870341	3.61399111129478	3.55619777369255	-0.0310523835331168	0.95666962803417	0.989887454023164
Merged-chr16-77300687-4	chr16	77300191	77301191	+	902.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28637.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	3.55606202886155	3.6455863550479	3.43359692391285	3.28252428120655	3.53805309007474	3.50499202078444	-0.378987182414878	0.522068666547951	0.847437132360093
Merged-chr6-72901095-2	chr6	72900595	72901595	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1116.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	3.84880378642187	3.92694001242393	3.80811141922238	3.91776028911996	3.75585958813754	3.82639105148856	-0.103643462516548	0.84061005682665	0.962819298477451
Merged-chr7-28442962-4	chr7	28442462	28443462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039192, intron 3 of 6)	intron (NM_001039192, intron 3 of 6)	2025.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	7.0627867006933	6.6048954405816	6.45757910915109	6.71723893959817	6.83057848277586	6.83713271951841	0.0781809089714318	0.787404169921104	0.94877064431094
Merged-chr5-130846445-2	chr5	130845945	130846945	+	914.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	397653.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.49661570760579	3.9344274933264	3.90553153447861	3.38915726652098	3.39542020024388	3.78504334225567	-0.906524893931491	0.133721700083759	0.48897703154
Merged-chr1-161897843-2	chr1	161897345	161898345	+	869.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-21163.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	4.52762336800609	4.62606193175789	4.72270112368677	4.55619387117185	4.41584157721021	4.51122072016231	-0.322899429847125	0.44222363620426	0.803148926264737
Merged-chr6-92092809-1	chr6	92092309	92093309	+	982.0	f0_balb.idr	5' UTR (NM_001347342, exon 1 of 15)	5' UTR (NM_001347342, exon 1 of 15)	376.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	6.54967681167027	6.73145917436121	6.74915468977138	6.8171707932776	6.86556522679188	7.04376939374464	0.359184453917167	0.160350574274329	0.532965919658045
Merged-chr14-20861396-4	chr14	20860898	20861898	+	930.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	24736.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	2.87792527418038	3.05059829434113	2.79315764611234	2.84553147075436	2.88597683487936	3.10686492860704	0.143552554065683	0.839914059045208	0.962784121274377
Merged-chr4-155122856-3	chr4	155122380	155123380	+	952.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	36276.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	4.01777912857422	3.65866311525056	3.84233903774325	3.06663122335282	3.08518334539009	3.32520385187582	-2.88006972008823	2.67904430870976e-05	0.000936629911088748
Merged-chr1-67382531-4	chr1	67382025	67383025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	259498.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	4.27091400739222	3.99197593490394	4.35223932300399	4.20277625505921	4.25642247036736	4.29012857615249	0.116112130825179	0.805788936495493	0.953986594404215
Merged-chr17-34238914-3	chr17	34238435	34239435	+	969.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010389)	promoter-TSS (NM_010389)	30.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	3.46521450639492	3.23507664593666	3.44334462747966	4.10982876185094	4.08178052030483	4.22535062940312	2.65269736040932	7.60795256464805e-06	0.000316205053446171
Merged-chr11-32455918-4	chr11	32455430	32456430	+	959.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361561, intron 1 of 1)	CpG	560.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	5.81978146114623	5.75041924659937	5.37066106822734	5.7115291471619	5.35693630322704	5.40281051491434	-0.323064138774789	0.358087816300575	0.74454984718519
Merged-chr17-5975843-3	chr17	5975332	5976332	+	984.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113353, exon 2 of 27)	exon (NM_001113353, exon 2 of 27)	246.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	3.84762279457632	3.84845035173204	4.30572620853841	4.21286600450021	3.62090305620278	3.71173921534146	-0.404031076643621	0.487365303991649	0.828421837588934
Merged-chr6-134172540-4	chr6	134172041	134173041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	MTD|LTR|ERVL-MaLR	136841.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.41220662951884	6.26344743233213	6.36627075465238	6.18440168220568	6.5535490487403	6.56746073137036	0.162813520728884	0.567326306011265	0.867922102830153
Merged-chr8-122477064-2	chr8	122476564	122477564	+	836.416626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033142)	promoter-TSS (NM_001033142)	921.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	4.07348916844805	3.6446351058783	3.88157260651263	3.72205425007477	3.73097857049604	4.22038634974836	0.0758771246751469	0.893275410154076	0.975210713351106
Merged-chr13-44416198-3	chr13	44415689	44416689	+	975.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23538.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.71531337204748	7.09608376218731	6.91818297974307	7.02772618145953	6.99794577088734	6.16739500016609	-0.184135320950804	0.579747975910567	0.872595003519464
Merged-chr1-13267638-4	chr1	13267065	13268065	+	887.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 2 of 22)	(CCG)n|Simple_repeat|Simple_repeat	104864.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.05781588199152	4.129841807325	3.96486265884459	3.70569025078375	3.49445879586722	3.42689021353299	-1.68870013185418	0.0027170021490083	0.0390257750413745
Merged-chr12-75853713-4	chr12	75853216	75854216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	35398.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	7.18571364703565	7.36087282138963	7.04127875552349	7.32007838339513	7.63447330153785	7.27716774379222	0.325281304681319	0.201397505518211	0.590984054786189
Merged-chr4-141652318-6	chr4	141651762	141652762	+	889.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	11853.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.55336354111725	6.54263658974884	6.41650539789652	6.3653315123236	6.48891685939721	6.16868842661709	-0.244839950068184	0.37474975071051	0.758118627242714
Merged-chr19-5492120-2	chr19	5491620	5492620	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007687, intron 1 of 3)	B1_Mur4|SINE|Alu	1665.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	5.15929494458545	5.18158371263756	5.43877993766383	5.20910382669793	5.36816150775188	5.44454572252715	0.171943848198093	0.625289991002314	0.89246806537449
Merged-chr7-4725419-4	chr7	4724917	4725917	+	746.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177887)	promoter-TSS (NM_177887)	-166.0	NM_177887	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	5.14306401487937	5.13671955586903	5.31738520678179	5.00966760961046	5.20575196734857	5.5980036807254	0.177076036398817	0.640521046140099	0.898483031109382
Merged-chr15-27661833-2	chr15	27661333	27662333	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 4 of 6)	L1ME1|LINE|L1	19709.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.18205551949588	4.16229750854139	4.2828464023432	4.04331300537809	4.06264526302918	4.39019592524748	-0.116879707404079	0.806786525653476	0.954366489338713
Merged-chr2-132265395-4	chr2	132264902	132265902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	2254.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	5.69317862613811	5.58425092874524	5.47509772140702	5.55059567568557	5.91980382907768	6.04257411632494	0.469685743834513	0.159802734896069	0.532236559469722
Merged-chr12-112616781-1	chr12	112616281	112617281	+	555.0	f1_c57bl6.idr	Intergenic	Intergenic	-3266.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	5.06065071920862	4.97299268004947	5.35437255801794	5.22042395980514	5.27048533925932	5.29794563257617	0.278759365231223	0.442257725592134	0.803164276726838
Merged-chr6-29534050-2	chr6	29533550	29534550	+	611.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_012057, exon 3 of 9)	exon (NM_012057, exon 3 of 9)	4768.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.6121898581273	4.59175141385889	4.7963924167744	4.59669076553952	4.60086364405088	4.86096444754908	0.0479824963720061	0.907518941499542	0.978939051225517
Merged-chr11-59554881-4	chr11	59554358	59555358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12172.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	7.43156710588582	7.10268544650752	6.82061567302796	7.07351256666419	6.91138965055914	6.78373085387828	-0.334925479079333	0.232515407636091	0.628804775351458
Merged-chr2-60120875-4	chr2	60120354	60121354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	4886.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	6.15046661021324	5.91903843183884	5.55086501443842	6.13765816364984	6.05403672476615	5.73421023722706	0.14751530239169	0.66412198610642	0.90751097049737
Merged-chr7-12922227-4	chr7	12921736	12922736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-75.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	7.20262813705753	7.37964639764935	7.54063498060011	7.42563540465262	7.54208703658455	7.23392774970906	0.055732045193233	0.820707317196791	0.957802665562998
Merged-chr19-17176878-4	chr19	17176396	17177396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181348, intron 10 of 19)	A-rich|Low_complexity|Low_complexity	162609.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	7.07441258092503	7.0407458506575	6.95733918905338	7.16290735465306	7.5922802126755	7.07088011681421	0.420919845693463	0.113921967717883	0.450859089500984
Merged-chr10-91182769-3	chr10	91182245	91183245	+	787.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11126.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	6.47532731457683	6.60912552882895	6.26746518527461	6.83517689507475	7.04569917229927	6.92822119122945	0.742680579966388	0.00549005596144982	0.0654465009226814
Merged-chr17-88284649-4	chr17	88284137	88285137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156067.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.2926443061704	2.80746084728606	3.11356830752358	3.16250477675515	3.30513379805781	3.30132546746521	0.712693975398064	0.307713752553734	0.703816371678414
Merged-chr4-59455677-4	chr4	59455171	59456171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17038.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.36983463483099	6.60215051607261	6.44536753162246	5.68911070175331	5.97574384338512	5.87199504262447	-1.05105519199313	0.000376873770259284	0.00839596055575222
Merged-chr14-73325434-4	chr14	73324943	73325943	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 1 of 26)	CpG	379.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	7.40624751081646	7.71591916593706	7.69563429138689	7.66662780729937	7.49786808552122	7.70875143842191	0.0169406731180811	0.942849392643352	0.987202156853573
Merged-chr9-35187682-4	chr9	35187168	35188168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177847, exon 7 of 7)	3' UTR (NM_001177847, exon 7 of 7)	-11681.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	4.53583531829738	4.09832384626655	4.71545429152633	4.15933438837602	4.1496081359106	4.59931987014277	-0.404733242101919	0.421865131406873	0.790758348631549
Merged-chr9-120602942-4	chr9	120602462	120603462	+	942.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25631.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.14687485113243	3.26859993852817	3.12821806695876	2.875923578885	2.55256140419226	2.83409643705255	-2.2695187281365	0.00436050092463041	0.0555548248257001
Merged-chr14-27388566-4	chr14	27388062	27389062	+	951.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 7 of 10)	intron (NM_027871, intron 7 of 10)	27173.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.38601431650646	5.48670490369498	5.46125780079545	5.62690722648125	5.60419648815998	5.8154557081051	0.439213113421102	0.174548477196948	0.553857442838487
Merged-chr8-66405956-4	chr8	66405475	66406475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	19674.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	5.66394483300747	5.62072825996198	5.57441125846618	5.72618262779635	5.71660124790418	5.71880459660387	0.179356341762593	0.56260546658633	0.865745518569294
Merged-chr10-79877336-4	chr10	79876822	79877822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2345.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	4.65872290038898	5.04337735725599	5.16488786284709	5.34282718404958	5.23854739282986	5.32194157268015	0.695489555362654	0.0695306711859133	0.345032686548037
Merged-chr8-41417114-4	chr8	41416600	41417600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013522)	promoter-TSS (NM_013522)	18.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	6.37939654049922	6.59578136629793	6.30241202704989	6.76185608543405	6.51189376045711	6.27926228002442	0.162581827354122	0.576324181755009	0.871585692229598
Merged-chr2-118728528-4	chr2	118728026	118729026	+	940.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-88.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	6.01418109545993	5.78110746099726	5.83281502989602	6.21001737710093	6.14579092115867	5.89488630049253	0.374574993992546	0.217383942131925	0.611228434322752
Merged-chr17-29438932-2	chr17	29438458	29439458	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-52087.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.28717479778251	3.14241372920479	3.16901956807035	3.52779159743265	3.54639845603234	3.68507838477256	1.49461709399647	0.0148393040261426	0.131618832373256
Merged-chr10-44669084-3	chr10	44668563	44669563	+	806.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-210315.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.17607942933181	4.48053176199795	4.86375614805778	4.34345472687687	4.46382140386855	4.72123542922416	-0.0344243173942312	0.942949511353644	0.987217876821358
Merged-chr1-172342014-2	chr1	172341542	172342542	+	554.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	832.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	5.00144975063133	5.68742649803992	5.55445519259545	4.80489082925688	5.04568426708137	5.21308537875301	-0.848539580955484	0.0382091801688913	0.241847346979408
Merged-chr10-52382540-4	chr10	52382024	52383024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-400.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	6.9757129143522	7.16882799506399	7.04861685736334	6.91070858084791	7.07051275526754	7.01392805771141	-0.101314104886198	0.676869383280237	0.912576714783976
Merged-chr8-70003986-1	chr8	70003486	70004486	+	579.0	f1_balb.idr	Intergenic	B1_Mm|SINE|Alu	-7602.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	5.9182211594467	5.84807875633404	6.00938983646894	6.54032474607948	6.60234002364397	6.30810010072403	0.967997107125029	0.000646036287602642	0.0128662966536239
Merged-chr18-20749594-3	chr18	20749108	20750108	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.81851167042312	5.84615579878377	5.69558081535361	5.94241502548713	5.98228237440669	5.2074461593293	-0.0336452743267689	0.927416924153244	0.983584626679457
Merged-chr11-88950414-4	chr11	88949910	88950910	+	919.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5032.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	6.70027440650227	6.782905925359	6.77268057064711	6.93721405290976	6.86002135025979	6.83119878593119	0.196578467257309	0.423928346789789	0.792287630377897
Merged-chr3-20023982-2	chr3	20023482	20024482	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	11328.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	2.73548445238398	3.026862453592	2.97966299752291	2.79590972456497	2.90950159042743	3.10832295764089	0.0974206728561476	0.89189349759627	0.974942585822634
Merged-chr12-85462145-2	chr12	85461645	85462645	+	789.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11745.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.00929426059218	3.2129871718466	3.10993303656098	2.76710616107114	2.92730806319182	3.06644150463269	-0.892035851225853	0.201456531259087	0.590984054786189
Merged-chr5-123027738-4	chr5	123027260	123028260	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	12686.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	5.23643613687085	4.87782751440343	5.35894433184238	4.7450981006658	5.14189000110316	5.24524204005376	-0.222287088361632	0.584360795591153	0.874561879083458
Merged-chr11-77983709-4	chr11	77983216	77984216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174852, intron 1 of 14)	intron (NM_174852, intron 1 of 14)	900.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	6.78477062503608	7.08846937747937	7.40479466157789	7.20287816901038	7.38381711809221	7.75542663003663	0.52454547029697	0.0727166343768618	0.354242023627297
Merged-chr9-20878937-2	chr9	20878437	20879437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145154, intron 1 of 5)	intron (NM_145154, intron 1 of 5)	773.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	6.86834043551031	7.12373838345756	6.87123834523245	6.90616561110351	7.04465550185964	6.69348448284626	-0.10021003436374	0.703114224916868	0.922108924938678
Merged-chr6-113740075-1	chr6	113739575	113740575	+	541.0	f1_c57bl6.idr	intron (NM_024206, intron 1 of 8)	intron (NM_024206, intron 1 of 8)	606.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	7.13589298860761	7.39919745530689	6.89108909962872	6.9651810142957	7.09980842618898	7.03462134385514	-0.201141341269484	0.44325018464625	0.803721182942431
Merged-chr4-149665567-3	chr4	149665062	149666062	+	967.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-2246.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	6.36188174886772	6.0113478368595	5.9239888008919	6.05232622757228	5.97903889513213	6.07917825564017	-0.150541886024921	0.622354083116221	0.891105923768082
Merged-chr7-34272676-3	chr7	34272170	34273170	+	976.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	12939.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	2.51682913339211	2.34316905052504	2.59806653582522	2.52027488591469	2.30673754953063	2.54760559621855	-0.172688196098375	0.833212043678175	1
Merged-chr12-118758209-4	chr12	118757679	118758679	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88150.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	2.8314804466457	2.90439201608531	2.93311536854478	2.84369361100643	2.5794919770559	3.11877480756554	-0.138741758891523	0.854470331365193	0.965987623019113
Merged-chr13-99336948-1	chr13	99336448	99337448	+	617.0	f1_balb.idr	intron (NM_026873, intron 3 of 9)	B4A|SINE|B4	7730.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	6.40946705959064	5.94816866108226	6.24420770153473	6.60950056532027	6.64963774896546	6.44155836533199	0.590067095329261	0.0435320653008194	0.262232396260811
Merged-chr8-72330574-2	chr8	72330055	72331055	+	847.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11493.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	1.87131463187018	1.97413965944808	2.0712475587171	1.8061890887094	1.71356257304338	1.80933880427403	-1.8665914644432	0.0757641444382045	1
Merged-chr10-59221856-4	chr10	59221256	59222256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172939)	promoter-TSS (NM_172939)	91.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	7.94155765357672	8.02017748143648	7.81583708951985	7.97953817153521	8.06953032687089	7.79507105683025	0.0376278631302006	0.865435422158469	0.968641478520565
Merged-chr3-65991334-3	chr3	65990906	65991906	+	801.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-33157.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.26111646602636	3.12095521148392	3.25970358210041	3.32518265466365	3.27958743454632	3.38675542452235	0.469502867375619	0.444683960601409	0.804462724072661
Merged-chr18-36561279-4	chr18	36560791	36561791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	CpG-6857	688.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	7.89983003613152	8.40883238253787	7.88622374163896	8.23599885008328	8.45150582035675	8.07411606715323	0.242058954571315	0.350826820162253	0.738815453164556
Merged-chr9-59753548-2	chr9	59753048	59754048	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	2374.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	5.88098523164921	6.39032880794533	5.73858733348773	6.79338178789979	6.81258890662417	5.94431895019003	0.88279016373555	0.0202881039183055	0.163010095677323
Merged-chr18-65505135-4	chr18	65504616	65505616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	74119.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	7.53808778638103	7.74278225955122	7.23799047712273	6.22605821690621	6.32380598664277	6.34146068393506	-1.90247170504739	1.60101139805284e-12	2.97359277699064e-10
Merged-chr14-65100613-4	chr14	65100121	65101121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2515.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.62840813405347	5.47322311175733	5.81504015639138	5.72809684683591	5.73997244207889	6.32240892958858	0.55761554994531	0.113183773634876	0.44938889230771
Merged-chr2-167778412-2	chr2	167777912	167778912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87235.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.33509354741799	8.29934048486046	8.30432889261307	7.99962305280941	8.20908134732497	7.7014949161385	-0.445292631482082	0.0577498446393648	0.310516902924217
Merged-chr4-7457642-4	chr4	7457161	7458161	+	967.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103027.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	4.29045005320082	4.74895451325007	4.77104489062963	4.98388328214596	4.90050132761638	4.83687027583963	0.670319952515705	0.115770697984755	0.454239083223252
Merged-chr11-98782769-4	chr11	98782243	98783243	+	744.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7366.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	7.79033871939838	7.60758065584718	7.77022965978403	7.67322210741971	7.87110458293722	7.74115634166326	0.063830559820597	0.774552655085806	0.944477929413368
Merged-chr18-56875424-3	chr18	56874931	56875931	+	956.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177115, intron 1 of 4)	MTD|LTR|ERVL-MaLR	50117.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	3.48562981918451	3.31394560909762	3.78252474433833	3.17886658734018	3.29519670341942	3.51054790766076	-0.770339797390113	0.222036310474928	0.616950421491945
Merged-chr13-73467184-4	chr13	73466676	73467676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145376)	promoter-TSS (NM_145376)	-207.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.72133547682423	5.44846537742774	5.38186599198343	5.59316681624916	5.46178099238166	5.56484053669935	0.00813404742844377	0.980650029842371	0.995558035225153
Merged-chr19-11102119-4	chr19	11101634	11102634	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 5 of 6)	intron (NM_027058, intron 5 of 6)	-21031.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	5.52438791506976	5.69575154089677	5.94769615047977	5.39065473352998	5.15186222483654	6.08899159823685	-0.241437215108801	0.553691485089748	0.86242416074854
Merged-chr2-167493090-4	chr2	167492542	167493542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170756)	promoter-TSS (NM_170756)	-168.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	9.06749885688582	8.99958340917923	8.58740191399179	8.72178142347537	8.88021674579558	8.39768687800588	-0.300448540203548	0.225179798416148	0.620063864646258
Merged-chr16-36628061-2	chr16	36627561	36628561	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	38016.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.09383902164701	5.91186886318479	6.13500214523529	5.82119467906934	5.83381090894211	6.17474826035266	-0.180144491777795	0.557934586447841	0.86443214373182
Merged-chr15-62042619-2	chr15	62042119	62043119	+	659.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	B1_Mur4|SINE|Alu	3362.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	5.11393571577795	4.94587667338921	4.87922659547432	5.45401159967037	5.37194000022023	5.47896631109612	0.899353358843225	0.0118032813897533	0.112875949560505
Merged-chr4-43419230-6	chr4	43418731	43419731	+	804.486084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9903.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	7.13724761162551	7.37180000863597	7.13922510976448	6.75271655704269	7.07016726800793	6.98871979817538	-0.419892253220605	0.0991081303353767	0.419759234012969
Merged-chr6-114912674-2	chr6	114912174	114913174	+	784.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	9147.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.47169455088345	4.49710186524826	4.65474888245667	4.58860594457222	4.33662156618972	4.86097887698949	0.150930096902732	0.73476271546776	0.932617455907478
Merged-chr1-34840479-3	chr1	34839990	34840990	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	2560.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	6.10525843632164	6.27790936069306	5.6317323616911	6.31474753160221	6.24336764526685	5.97156242168718	0.241854865594472	0.466610883639811	0.817586753758551
Merged-chr18-60711553-2	chr18	60711053	60712053	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16013.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	4.47979584924405	4.37043854181137	4.69957771971502	4.40840091126723	4.13296391303621	4.36743207162473	-0.553142086284566	0.224578344907202	0.619438735049331
Merged-chr19-4201703-4	chr19	4201196	4202196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-93.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	6.91453721604202	7.04645972237664	7.00640089959222	6.85210305165056	6.93566450488575	6.74395216238239	-0.210718522185994	0.392282142654589	0.771071825711119
Merged-chr12-40550947-2	chr12	40550447	40551447	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	104894.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.69465596922083	4.4291404303838	4.1452090631844	4.53526695876727	4.44852988331648	4.62457654180819	0.197612157670902	0.669122858036293	0.909521763807627
Merged-chr2-165328921-3	chr2	165328411	165329411	+	721.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2432.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	3.25082171477852	3.10931316271845	3.24855583939464	3.23461483200864	3.22499835802259	3.48138037416584	0.450058195699359	0.472500168823116	0.820550293768681
Merged-chr1-118312074-2	chr1	118311574	118312574	+	555.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011650)	promoter-TSS (NM_011650)	-728.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	4.22785870369946	4.01238140506509	4.45600559555845	4.31650647402848	4.29278716556631	4.26836017829137	0.161110874424449	0.733063109526245	0.931987040906377
Merged-chr4-150593994-4	chr4	150593517	150594517	+	987.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	58157.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.95025377143473	7.30686106134862	6.69322265387286	7.46928415952019	7.77038504356359	6.80460397774978	0.599662938064792	0.0744604986576348	0.359066140447834
Merged-chr5-146758119-4	chr5	146757621	146758621	+	932.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	36835.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.31416860493961	5.17601404030706	5.40926343876598	5.42568199219384	5.76566846768045	5.34932226542553	0.471971139195595	0.181857101736033	0.56447814829156
Merged-chr1-65177670-4	chr1	65177186	65178186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1456.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	8.31298763163469	8.87447361691338	8.21954844833505	8.38198322781948	8.93117761016408	8.0105215239962	-0.00185987373408454	0.995293444605768	0.998961028701257
Merged-chr18-82821020-2	chr18	82820520	82821520	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34877.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	2.9871920742177	2.82211967176749	2.90441908970259	2.81790853551295	2.62561080740881	2.85629607345418	-0.7258477233548	0.318079684545828	0.711817713144205
Merged-chr12-25100864-1	chr12	25100364	25101364	+	1000.0	f0_c57.idr	Intergenic	CpG	-4772.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	8.25543809005565	8.64359766466024	8.15184746878757	8.29840211983777	8.61372670109388	8.22113018736335	0.028837079622581	0.908380081849982	0.979259582109985
Merged-chr1-152524533-2	chr1	152524033	152525033	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 16 of 17)	intron (NM_016846, intron 16 of 17)	100684.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.86227741077434	4.47366496643755	4.9244764255329	4.43603507380139	4.53244108609014	4.74095239786979	-0.455655918353072	0.296500970577056	0.693171366955017
Merged-chr15-66813085-4	chr15	66812571	66813571	+	959.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18758.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.90642091490775	6.92405279748175	6.87441705155856	6.81833750774552	6.68417123515631	7.35227199924099	0.110415273599492	0.702575487009057	0.921908665861083
Merged-chr11-23305839-4	chr11	23305305	23306305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1090.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	8.0873867260873	8.45420721988712	7.94283039519908	8.14888612152605	8.28103870453389	8.17250019098066	0.0229602496117505	0.923517151587011	0.982720998667572
Merged-chr16-30466110-4	chr16	30465588	30466588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-77558.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	5.006751705575	4.99633014955356	5.47072745569128	5.89963035319753	6.05394141164196	5.38100438289073	1.25303561161608	0.00108609716730552	0.0192110407711827
Merged-chr5-35582940-4	chr5	35582455	35583455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357020)	promoter-TSS (NM_001357020)	-79.0	NM_001357020	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	7.98122377101672	8.40011808862632	7.84109449269151	7.96117782210587	8.2187069292169	7.85502435849286	-0.109422384044008	0.672699622488833	0.910949422492829
Merged-chr2-142764749-4	chr2	142764220	142765220	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	136744.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.38357751622633	5.82933207504868	5.13651843352923	5.02880178751795	5.19082292430332	5.36735973857372	-0.584273884910325	0.135019407540579	0.49115567293156
Merged-chr4-126110196-2	chr4	126109734	126110734	+	973.25	f0_balb.idr|f0_c57.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6277.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	7.40199173100267	7.07247421167474	6.83191464420195	7.18664457391056	7.35272281075321	6.95149178009986	0.0739413107608725	0.792032242363317	0.949867627526955
Merged-chr8-106151917-4	chr8	106151318	106152318	+	978.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	1464.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	8.02359940616567	8.43307811674651	7.93900441842243	8.15163419102628	8.5851365018885	7.76229979760193	0.0911865938349128	0.755701246057451	0.939400440743942
Merged-chr4-102570487-4	chr4	102569968	102570968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001177980, exon 1 of 10)	5' UTR (NM_001177980, exon 1 of 10)	408.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	8.35274587910594	8.53614098979089	8.21211928900878	8.3432286592752	8.64857524645678	7.96727670943233	-0.0254188419738513	0.922023298951936	0.982542868764899
Merged-chr1-106099349-4	chr1	106098852	106099852	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72172.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	4.81129754533436	4.64721221614227	4.64697053334657	4.60938853623611	4.89355013956038	4.86685149622141	0.20998443400455	0.605314181977908	0.88352351689788
Merged-chr18-53877634-4	chr18	53877126	53878126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 1 of 12)	intron (NM_152809, intron 1 of 12)	15513.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.00964737777707	6.20400077231654	5.747508013522	5.87285096069964	5.95890748701712	5.34113438615177	-0.425209414758153	0.231580354477177	0.627522653966098
Merged-chr5-122285209-1	chr5	122284709	122285709	+	593.0	f0_c57.idr	intron (NM_177242, intron 1 of 5)	CpG	811.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	6.47212670118503	6.28665093865675	5.95280708729844	6.51743455040392	6.41031795724059	6.48312280217575	0.328699264327753	0.263953612137466	0.661879105198449
Merged-chr10-67049013-4	chr10	67048517	67049517	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43942.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.11609825621311	4.90570747927403	4.98811294271988	5.14845017965879	4.97097132716547	5.22036707451238	0.216158279194047	0.561865914497809	0.865580593452079
Merged-chr3-58516884-4	chr3	58516387	58517387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8934.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	6.17436093818302	6.35474777833468	5.93854932955981	6.14282517917599	6.0832605045649	6.22497852468897	-0.0538732035483344	0.855658895417321	0.966244542232428
Merged-chr16-78576111-4	chr16	78575599	78576599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252440, intron 1 of 4)	intron (NM_001252440, intron 1 of 4)	589.0	NM_001252438	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	7.16065515753363	7.36955020733128	6.89939576858065	7.41957773654338	7.47117897081475	7.31267375113568	0.353077687873822	0.163758544767774	0.537798828885102
Merged-chr8-33354776-2	chr8	33354276	33355276	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122822, intron 1 of 33)	MTC|LTR|ERVL-MaLR	30751.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	2.56257869066682	2.7141406783494	2.49565621974682	2.67575797023974	2.51530540234414	2.99769167168423	0.769487929286535	0.340603708485871	0.730267550714844
Merged-chr7-16816812-4	chr7	16816334	16817334	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-102.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	6.13620518686278	6.22340636923302	6.61427376082921	6.18813017382722	6.0163476764041	6.40962130720654	-0.210367539882949	0.498176911457591	0.833856267944725
Merged-chr3-15576651-4	chr3	15576140	15577140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1575.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	5.20888658915607	5.25421119495811	5.32912238065311	5.46334762709299	5.40020093969242	5.56423835988521	0.416074883297413	0.216218548973659	0.60966157312776
Merged-chr8-23256016-5	chr8	23255516	23256516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020585, intron 1 of 4)	intron (NM_020585, intron 1 of 4)	1064.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	6.28121888623327	6.2496360205079	6.32584052516783	6.59664680031028	6.75775393229409	6.6688583915677	0.639516591017131	0.0147828725739618	0.131321061148137
Merged-chr4-6357253-4	chr4	6356759	6357759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8421.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	8.02436829063343	8.35271865204946	7.88997392665946	7.83454746708275	8.10374681877256	7.44998038182047	-0.390071103738208	0.155436934353323	0.525131844388404
Merged-chr8-82376362-3	chr8	82375874	82376874	+	906.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	MLT2B3|LTR|ERVL	26212.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	5.01002676525425	4.96784109381822	5.06003393559218	5.01714745265051	5.12203889331263	5.18987335072826	0.210530022382556	0.562145303439117	0.86560636450104
Merged-chr16-30604266-4	chr16	30603752	30604752	+	931.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4529.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.48884950986886	5.1854188906476	5.43007650556911	5.35239812933842	5.22045905832386	5.3435746915199	-0.136736703321069	0.695197319344323	0.919230570201314
Merged-chr2-52457442-3	chr2	52456936	52457936	+	809.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-32562.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.8900707609514	3.79477129039554	3.97300298898933	3.8687459398218	3.86772515682629	3.84540861646131	-0.0681256746122611	0.893584335219839	0.975265071347118
Merged-chr12-84021840-2	chr12	84021340	84022340	+	957.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2a|LTR|ERVK	12338.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	4.76953200188761	4.71657479676105	4.77321254638408	4.42361677343152	4.42427472638387	4.72645243327225	-0.55575564273103	0.183098535515596	0.566085379224821
Merged-chr2-174436457-4	chr2	174435878	174436878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	2661.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	6.33537008894812	6.33020352423919	6.0361837737937	6.30462009232597	6.15194039330617	6.0974570286791	-0.103267105689687	0.721057234207142	0.928382096777546
Merged-chr7-142361003-1	chr7	142360503	142361503	+	551.0	f1_c57bl6.idr	intron (NM_001347541, intron 2 of 2)	MLT1A|LTR|ERVL-MaLR	11256.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	2.33316475965232	2.30523401356446	2.40218667614758	2.68745856829427	2.47683332578712	2.60710909393044	1.56403828195715	0.0580780438134695	1
Merged-chr5-123661767-4	chr5	123661271	123662271	+	906.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	PB1D7|SINE|Alu	22590.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	6.87692305646451	6.36295463232418	6.07419773097911	6.40727802300531	6.36399701667846	6.01284272493108	-0.347339894950857	0.307441897960617	0.703580177816035
Merged-chr10-34207290-4	chr10	34206743	34207743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172508, exon 1 of 6)	5' UTR (NM_172508, exon 1 of 6)	308.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	7.97128102101507	7.81691130371502	8.09225508210932	7.82513371209162	7.82654623885538	8.03154038905252	-0.0958470615701327	0.668463649928512	0.909204788456481
Merged-chr15-84167758-4	chr15	84167259	84168259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105816)	promoter-TSS (NR_105816)	-57.0	NM_054088	116939.0	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	3.83809908318271	4.07019192330904	4.09124069034971	3.90579835724447	3.87111137310972	4.44767848682676	0.258171253742373	0.629344536629801	0.894177193823197
Merged-chr12-55490445-5	chr12	55489981	55490981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 5 of 6)	exon (NM_010907, exon 5 of 6)	2166.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.19429005852098	8.20204830792182	8.1543359118224	8.36106713867582	8.61038179609404	8.17605771831518	0.304640938333248	0.174145391529806	0.55334916165878
Merged-chr11-21729257-3	chr11	21728756	21729756	+	976.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145425, intron 12 of 17)	intron (NM_145425, intron 12 of 17)	156975.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	2.52012691112832	2.66669661728502	2.83733113829809	2.70505081859661	2.82630293939411	2.967354933329	0.832043060791215	0.271342435885442	0.668672425457511
Merged-chr1-157445062-3	chr1	157444573	157445573	+	985.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13495.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	5.91577359805165	6.05445969691748	6.22179017590753	5.77648960253335	5.93955749559874	5.67948060617648	-0.437598538545743	0.157559469063574	0.52897870811176
Merged-chr3-144401413-3	chr3	144400894	144401894	+	815.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	168822.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	3.19873821846384	3.02320921531883	3.42221668743404	3.4708937743717	3.23327733735365	3.27239018191602	0.452144166309542	0.483448217677558	0.826198100115307
Merged-chr11-97657480-3	chr11	97657029	97658029	+	728.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5883.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	4.14328463078253	3.69925642184293	4.23856032176504	4.52255294695718	4.65497336020133	4.67761564000035	1.54905033043193	0.00185883792527847	0.0291940706090168
Merged-chr15-79834339-4	chr15	79833804	79834804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028763)	promoter-TSS (NM_028763)	29.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	3.61890327245561	3.4032159099614	3.65295647671796	3.52589969647186	3.09006556770185	3.34540320376364	-0.876004259675827	0.166179810303299	0.541302113093556
Merged-chr17-24344858-3	chr17	24344308	24345308	+	910.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031621, intron 2 of 29)	intron (NM_001031621, intron 2 of 29)	2444.0	NM_001031621	381072.0	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	4.51085148840062	4.57699801358024	4.76202171507216	5.4023317089009	5.26242080843954	5.12259548862613	1.4510965518032	0.000168601669750917	0.00435954249118529
Merged-chr9-123984713-2	chr9	123984213	123985213	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6305.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	5.13903529737586	5.46504386310876	5.36530578443451	5.22120034321996	5.26874404040249	5.48581627474728	-0.0147701640721703	0.966848861644078	0.992385080835768
Merged-chr18-76949027-4	chr18	76948519	76949519	+	896.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361227, intron 1 of 6)	intron (NM_001361227, intron 1 of 6)	4635.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	4.40549594139762	4.39781798201604	4.6035853240321	4.48542909563103	4.62037764577767	4.42007830199904	0.135215340028819	0.754133173973431	0.938737574089031
Merged-chr2-92059659-4	chr2	92059173	92060173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35503.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	4.55733208473042	4.54163557109	4.11788759075915	4.58966676509689	4.2695265840062	4.08321860626129	-0.240640641248388	0.627572717932133	0.893330206932885
Merged-chr11-84117579-4	chr11	84117086	84118086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172562, intron 4 of 15)	ORR1D1|LTR|ERVL-MaLR	11982.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	5.68246866582531	5.71959013909773	5.41276538916488	5.86880401691618	5.93340917954917	5.65838736423906	0.382983465141903	0.237400453592476	0.633819448839209
Merged-chr14-118910112-4	chr14	118909634	118910634	+	992.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360412, intron 8 of 22)	PB1D10|SINE|Alu	12657.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	6.77747958364221	6.5127147865445	6.17450852862054	6.74543861948184	6.56363606980064	6.06839800907537	-0.0348299057666852	0.916332754191108	0.981243905880233
Merged-chr4-32187345-4	chr4	32186873	32187873	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	223266.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	2.96760543554643	2.88417884368467	3.18202826139956	2.56763528943106	2.65456539457014	2.79695698168614	-1.81072929896896	0.0191174290418573	0.156812156021778
Merged-chr19-40513206-2	chr19	40512705	40513705	+	601.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_009166, intron 1 of 23)	intron (NM_009166, intron 1 of 23)	531.0	NM_178362	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	4.13471268996801	3.75447940486129	3.70397287942374	3.83665158457131	3.68982710740469	3.54620119369216	-0.596824843536052	0.292455811107148	0.689679830251773
Merged-chr1-173411195-2	chr1	173410673	173411673	+	611.25	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9431.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.68655475705744	5.34044469860575	5.13648330071238	4.82564019030039	5.02426028808605	5.16725581994417	-0.833172581069113	0.0312290617639094	0.213987734043803
Merged-chr5-124542045-2	chr5	124541545	124542545	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019770, intron 1 of 3)	intron (NM_019770, intron 1 of 3)	1254.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	4.79577442767074	5.0611329664417	4.84494690087026	4.81904070960556	4.693041247068	5.05008237708227	-0.133627366782609	0.738775411570341	0.934097531431035
Merged-chr11-119917249-3	chr11	119916773	119917773	+	956.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085498, intron 6 of 7)	intron (NM_001085498, intron 6 of 7)	3463.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	5.79193789342611	5.99683778029438	5.08025650384922	4.95509595140756	5.15115814972894	4.76892798256942	-1.40006847008985	0.00110728354801119	0.0194788265249293
Merged-chr7-55959837-1	chr7	55959337	55960337	+	566.0	f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	L2a|LINE|L2	2656.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	3.86477743848335	4.15496848281279	4.58737912770976	4.06208018489236	4.30542519436557	4.72194396884185	0.408185269717613	0.453452173979039	0.809761744660326
Merged-chr3-108573729-2	chr3	108573229	108574229	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 2 of 3)	intron (NM_025444, intron 2 of 3)	2030.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	3.46465558613498	3.53848908150767	3.41758728245799	3.34326897656708	3.32805880479446	3.31763266777198	-0.568665777384179	0.336326073757145	0.726336524311157
Merged-chr12-17544001-1	chr12	17543501	17544501	+	586.0	f1_c57bl6.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-872.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	3.59450960436744	4.20285668228144	4.05525958589204	4.22352971665407	4.02823431604473	3.81821023443932	0.168930402004458	0.764586083012157	0.941979298344481
Merged-chr2-79618736-3	chr2	79618243	79619243	+	734.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16682.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	5.99587818501969	5.90724565380655	5.63789511338548	4.93785169010708	4.61602688991942	4.82853405041741	-2.17195934233065	3.82109195938763e-09	3.81687178579502e-07
Merged-chr9-124060149-2	chr9	124059649	124060649	+	797.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38178.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	4.69218943189223	5.02565080292367	5.14496835676801	5.1548586404895	5.44275876157369	5.44933026381063	0.816692372396703	0.0330376689736696	0.221621925182288
Merged-chr6-97446770-2	chr6	97446270	97447270	+	991.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12516.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.26069947225153	6.02566398918287	6.25354411128366	6.41398756699654	6.49396925886959	6.41012888730586	0.43439218841549	0.116462453007316	0.45566407061799
Merged-chr3-38460150-2	chr3	38459650	38460650	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167883, intron 3 of 3)	intron (NM_001167883, intron 3 of 3)	24666.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	2.90876663109675	2.70019256339051	2.91219248855422	2.91242876359792	2.52255179001489	3.09929659789899	0.106536453293735	0.892194357714893	0.975003061645379
Merged-chr5-135395501-2	chr5	135395001	135396001	+	647.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-955.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	3.32496105808425	3.08936863990132	3.65488143305692	3.50974841480725	3.22093203592767	3.12139139297397	-0.29475666778918	0.663208261630171	0.907110065208622
Merged-chr3-51719615-4	chr3	51719112	51720112	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58433.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.56535921842378	4.22608883779765	4.42522813869209	4.68733889593725	4.08660200085234	4.40596300440244	0.00257661783994303	0.995778719240596	0.998961028701257
Merged-chr4-141874963-4	chr4	141874464	141875464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025994)	promoter-TSS (NM_025994)	-44.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.70572201105925	7.77684871182266	7.5636891372807	7.81568846995926	7.71649854313424	7.52994393945453	0.0110775986337244	0.96136220487088	0.99051531523293
Merged-chr2-148409368-4	chr2	148408895	148409895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1207.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	3.6399543105174	3.548714412212	3.76318115869536	3.84624507842101	3.42428611477387	3.67971831104575	0.0294730375656844	0.958964639925242	0.990174309444982
Merged-chr1-64924749-2	chr1	64924249	64925249	+	689.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	32075.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	2.68100082501969	2.64100020889451	2.91666760878503	2.88815273819037	2.62183186865077	2.55660797192525	-0.26394986049829	0.7339754481354	0.932325051544019
Merged-chr7-110710761-4	chr7	110710248	110711248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-57458.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	5.43798129423277	5.25837998768181	5.6724154319928	5.41065352597627	5.7708419679726	5.42883721988151	0.19445103052788	0.58431912616293	0.874561879083458
Merged-chr6-99028067-3	chr6	99027559	99028559	+	879.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	239.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.76258223271433	3.69081209974062	3.60179364807668	3.98606243744991	3.33226784399625	3.93011073003972	0.298255177297833	0.624285701667057	0.891935778467452
Merged-chr13-113918215-4	chr13	113917714	113918714	+	941.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123706.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	7.12481064159401	7.6586417165503	7.00371072555905	7.40918325700015	7.77984480771542	7.15819401907126	0.263442599361622	0.390237907744338	0.769547406615622
Merged-chr4-146457937-2	chr4	146457437	146458437	+	906.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085522, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	8907.0	NM_001085522	433791.0	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251	zinc finger protein 992	protein-coding	3.28490861854272	3.51145171230489	3.30413553400839	3.44494208506969	3.35848026173997	4.02009547136362	0.930629739459538	0.149174435778938	0.51537803021029
Merged-chr6-5508064-4	chr6	5507530	5508530	+	890.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11752.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	5.99488480698087	6.36045575033387	6.28299005003966	5.40555329178234	5.31086478924601	5.81202704246025	-1.26925210153033	0.0001576630570638	0.00413694575669974
Merged-chr12-8494645-6	chr12	8494110	8495110	+	817.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5399.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	2.8660665065955	2.88094995412771	3.02624489207177	3.00761609591353	2.71135880161054	2.9818985471213	-0.0994380945538199	0.888529797124095	0.974043020158646
Merged-chr2-84727369-4	chr2	84726875	84727875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-107.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	7.49494425981652	7.48889736776565	7.22116180470717	7.28431096642453	7.53077215912198	7.02828529820776	-0.154147696241493	0.555250560887463	0.863191483122339
Merged-chr10-75514455-4	chr10	75513955	75514955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347201, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	2926.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	6.26995120525396	6.17133203445881	6.05782919948772	6.49082211890662	6.73842172085493	6.14272318303725	0.527028698057209	0.0836343976031005	0.382722925576571
Merged-chr5-102073640-2	chr5	102073140	102074140	+	710.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3719.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.55122743034612	3.26593235228597	3.51088000608733	3.62142836587245	3.49740118905269	3.68592021295868	0.555633386468959	0.342204322656749	0.731283521951228
Merged-chr4-99829214-4	chr4	99828744	99829744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145549)	promoter-TSS (NM_145549)	-126.0	NM_026348	67733.0	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	3.98759265331828	4.03475506482641	3.99604668775493	4.29624276823644	4.40481484793741	4.38978116196351	0.997287368375869	0.0322210241187939	0.218077678125639
Merged-chr2-29670931-3	chr2	29670396	29671396	+	751.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51176.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	3.78019681774398	3.63909970957891	3.81015012203708	3.770010008649	3.91123063152762	3.77760677528417	0.275566788510831	0.601432914263701	0.881943853341137
Merged-chr15-59719120-2	chr15	59718620	59719620	+	796.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70466.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.80799269231571	2.95866988168585	3.01954026003386	2.72505990812766	2.65489086222099	2.85788084166001	-0.961317292823946	0.1863418630586	0.570809808295781
Merged-chr13-37721612-3	chr13	37721103	37722103	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104435.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.25365335714882	2.99248508973475	3.38349571588267	3.36269163270916	3.44027308293254	2.90562015272757	0.16427700697988	0.821643908721495	0.958023303204974
Merged-chr9-13469534-3	chr9	13469062	13470062	+	722.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38201.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	5.07019228629893	5.14160850655884	5.18794779387887	4.91529768116697	4.65216042288317	5.36876258607775	-0.284575619016568	0.491052578449199	0.830342687115936
Merged-chr9-107744317-4	chr9	107743825	107744825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_148930, exon 21 of 25)	exon (NM_148930, exon 21 of 25)	26677.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	6.96686877761244	6.87652771812161	6.8971537858648	6.71167550415604	6.96944506322907	6.82380853331869	-0.108195344191963	0.666090723010156	0.907966267164068
Merged-chr1-46852428-3	chr1	46851936	46852936	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	1182.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.91815443020325	6.83075468221565	6.42468569663808	6.30245987177484	6.62141382448935	6.64538054023288	-0.348438563903784	0.23120791034695	0.627044353317983
Merged-chr1-156676373-4	chr1	156675872	156676872	+	940.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2033.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.41232348056141	4.2443531318664	4.67664057729314	4.29739212343045	4.52107407292889	4.42590634946424	-0.0611796608725378	0.893149730106635	0.975210713351106
Merged-chr10-117792796-4	chr10	117792283	117793283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-78.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	7.10522090098506	7.18759936454262	7.24002282749687	6.92567919923716	7.22294539536017	6.92483922315473	-0.203246217540672	0.415623785567498	0.78656116488557
Merged-chr4-8852704-2	chr4	8852204	8853204	+	717.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 26 of 38)	exon (NM_001277149, exon 26 of 38)	101380.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.05452819915124	2.71070866593838	3.14128872952034	3.03983682395916	3.07732734903484	3.71540144719003	1.38290971328735	0.0689663555493971	0.343605323786255
Merged-chr18-32354036-2	chr18	32353536	32354536	+	649.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23181.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	3.90452055296845	3.80908602538643	3.84458073640749	3.82571338310498	4.28541548544681	4.15622885625639	0.760324370377139	0.142730457433303	0.504280748253166
Merged-chr9-65359286-3	chr9	65358763	65359763	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016688, exon 5 of 5)	3' UTR (NM_016688, exon 5 of 5)	-1797.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	5.85700507125696	5.57456326262372	6.1087526281936	5.70333023809339	5.7892861541593	5.56765307717818	-0.283333605236246	0.398603981482312	0.775273667788888
Merged-chr15-59480823-3	chr15	59480333	59481333	+	816.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	106635.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.69823608753362	4.35823521466634	4.67526446533179	4.18778549953052	3.98588620140817	4.62918124742315	-0.7697853669033	0.119562540714399	0.462186289791579
Merged-chr11-22695219-6	chr11	22694620	22695620	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	164615.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	3.23502287381668	3.07035255092329	2.95693530143893	3.32198329555456	3.00926363150145	3.15536332330666	0.300401393016271	0.656254219616004	0.904602840326388
Merged-chr18-84804603-1	chr18	84804103	84805103	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-46735.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.08244288964834	3.02532496647839	2.94634760419643	2.87018459898457	2.74816198411347	3.07789708740177	-0.590584417811071	0.401310640016433	0.777413818231261
Merged-chr3-27995771-2	chr3	27995271	27996271	+	887.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	Lx4B|LINE|L1	11600.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	2.34079170344639	2.59401432310665	2.63170437629641	2.5651437695641	2.54043498984235	2.82409936043784	0.67196307544156	0.406203060502797	1
Merged-chr8-66860201-4	chr8	66859715	66860715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163564)	promoter-TSS (NM_001163564)	-2.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	6.60705662047581	6.73172774333737	6.21596254390655	6.19604833436695	6.3863978809641	5.77232399765839	-0.633188485296785	0.0550252741455015	0.301402375377862
Merged-chr2-33887692-4	chr2	33887184	33888184	+	825.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175184, exon 1 of 10)	5' UTR (NM_175184, exon 1 of 10)	262.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.33444776669226	5.36618493304388	5.55815409541256	5.50498692344316	4.89764711392385	4.98586215457328	-0.515720963969965	0.187567019205871	0.572715736453053
Merged-chr12-28743734-1	chr12	28743234	28744234	+	792.0	f0_c57.idr	intron (NM_001161410, intron 2 of 11)	L1MA9|LINE|L1	6660.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	3.13173406277934	2.89258119120645	3.12132171068194	3.76251640205416	4.00034009875682	3.67367805060252	3.35949484594479	3.85521401659035e-06	0.000176469403391778
Merged-chr5-135689023-4	chr5	135688519	135689519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008898)	promoter-TSS (NM_008898)	-126.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	7.42655361246936	7.49416763448835	7.35311143151084	7.64963691945436	7.57677123406497	7.24618733778818	0.119508384033989	0.620821110178875	0.890351142483735
Merged-chr11-54521501-2	chr11	54521001	54522001	+	638.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1344.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.78102406882335	4.85334805384521	4.58508818398757	4.86469821995792	4.7282896851862	4.89035263503789	0.160286731228778	0.688747166830302	0.917235946766438
Merged-chr19-7295459-3	chr19	7295003	7296003	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080390)	promoter-TSS (NM_001080390)	-56.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	3.96193503814657	3.84016091913757	4.0331915673362	4.40246256003178	3.84282385197503	4.05425213650962	0.513155829773016	0.327797977462861	0.719952860201393
Merged-chr17-57344170-4	chr17	57343665	57344665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14521.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.72301030429708	6.23428110600076	6.52311588191223	6.70517063749372	6.85445980004855	6.79336120797367	0.439850339119569	0.117550455348069	0.457768441456549
Merged-chr12-102720959-3	chr12	102720439	102721439	+	950.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16070.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	6.01373005663325	6.3181751634739	6.3397205653555	6.08290861015611	5.75262215631667	5.9388133137916	-0.517975407049546	0.0920664699137203	0.404182833376811
Merged-chr17-27938542-4	chr17	27938054	27939054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	29248.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.2460654178509	5.9444332479436	6.02803474333645	5.76456301874634	5.63552915625977	6.04472042561452	-0.470777717259369	0.137355817550638	0.495254639661481
Merged-chr3-106498352-1	chr3	106497852	106498852	+	583.0	f0_c57.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	12312.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	3.74614400813374	3.65487110275282	3.9390233560663	3.98079043661345	3.96721187411774	4.05437732004439	0.696276603883886	0.175706889070174	0.555774586970482
Merged-chr12-86163007-4	chr12	86162424	86163424	+	850.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199843)	TTS (NM_001199843)	-6417.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	4.39871376539261	4.32995670179395	4.60362408791954	4.26160695017597	4.20618577094934	4.43155504201948	-0.381977110817887	0.396949856471854	0.773848546396843
Merged-chr5-139294318-4	chr5	139293812	139294812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	31152.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	5.20208884341795	5.21428593705651	5.25401902405944	5.05871634929349	5.22567209054699	5.43591128341274	0.0402151709889131	0.910316913761178	0.97984424692051
Merged-chr10-54119469-4	chr10	54118948	54119948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43526.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	7.4149204323829	7.33224666368154	6.85044147849192	7.27353775363661	7.27172989059316	7.20086714410289	0.0241918664468044	0.927171638488019	0.983584626679457
Merged-chr17-56609846-4	chr17	56609371	56610371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153152)	promoter-TSS (NM_153152)	-100.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	7.19400346214714	7.47315194757309	7.28131665437398	7.21453194322218	7.43690437158322	7.09252974593801	-0.0881877432557212	0.72494013595636	0.929475409375828
Merged-chr10-13967475-4	chr10	13966990	13967990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	1111.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.19770193675877	7.91553335238705	7.80075508223819	8.10762300782735	7.7310495494071	7.74311599011459	-0.160476624422676	0.518893104029613	0.845517694357366
Merged-chr3-108444174-4	chr3	108443669	108444669	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	1090.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	7.12066597371664	7.66585799381694	6.78718986672053	7.02058637087025	7.52129049854512	6.4945733498118	-0.244500080639604	0.675439142618345	0.912155652131913
Merged-chr5-43868879-4	chr5	43868355	43869355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	46.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	8.33298933801584	8.20678633653515	8.13043745746793	8.25003811388007	8.44894188972586	7.72487707817608	-0.0581092189794281	0.824850837145354	0.958596193929081
Merged-chr14-56042353-4	chr14	56041879	56042879	+	890.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008571, intron 1 of 4)	intron (NM_008571, intron 1 of 4)	256.0	NM_008571	17225.0	Mm.4409	NM_008571	ENSMUSG00000022226	Mcpt2	MMCP-2|Mcp-2	mast cell protease 2	protein-coding	4.09818617960246	3.81861850096307	3.5634432721831	3.66798186575007	3.40708298642723	3.90055986426468	-0.598851544200309	0.317461848106834	0.711322568148047
Merged-chr12-35554434-3	chr12	35553952	35554952	+	989.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19463.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	5.35826534973885	5.68554585154908	5.55582568352498	4.94677917246682	4.8937227287321	5.17211454058169	-1.09919392220482	0.00241261685151596	0.0357014090309337
Merged-chr8-31168341-1	chr8	31167841	31168841	+	1000.0	f1_balb.idr	intron (NM_026453, intron 1 of 9)	intron (NM_026453, intron 1 of 9)	383.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	5.61318914539032	6.19825505168038	6.00680347447133	5.96285442660123	6.04849902254289	6.13265468223929	0.144247061644091	0.658106136911786	0.904937992416562
Merged-chr2-52992851-1	chr2	52992351	52993351	+	557.0	f1_balb.idr	intron (NM_172409, intron 1 of 26)	ID_B1|SINE|B4	134983.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.467272847906	5.18878481107546	5.70839246289504	5.20270560978018	4.94668707368415	5.21817714440439	-0.685296102528437	0.0682185625621366	0.341659453091987
Merged-chr9-96363794-4	chr9	96363277	96364277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357213)	promoter-TSS (NM_001357213)	-62.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	8.3267793258562	8.41063797671646	7.96844617882264	8.11938874500187	8.21796276597859	8.11337320033136	-0.145532037245036	0.525123947363044	0.848874487604023
Merged-chr14-70927631-4	chr14	70927124	70928124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	37517.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.86145697396074	4.82030232171032	5.36016068598484	4.28372400191296	4.50706274347186	4.81069084274898	-1.10997392168004	0.0145543655827451	0.129945326264856
Merged-chr15-63595766-4	chr15	63595194	63596194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116086.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.36247834579039	6.17922917221348	5.58746580204017	5.75169725952385	5.63605860739082	5.7382956412033	-0.686955442903807	0.0480497298832262	0.277898236194028
Merged-chr6-29513468-4	chr6	29512961	29513961	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5509.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	5.40837173500477	5.75775947760952	5.475892567613	5.99375216078957	5.87128487028384	5.76596281988926	0.581308841651978	0.0752212972204301	0.361187240990106
Merged-chr14-61682366-4	chr14	61681899	61682899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-26.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.71759439940973	8.63667349530093	8.44099106213409	8.44016774500922	8.72085209474951	8.56174272208079	-0.0349324663202268	0.871447821474245	0.970222087171093
Merged-chr2-32083769-4	chr2	32083265	32084265	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	-60.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	6.87964291093994	7.01269662997858	7.09078980357307	7.19691048367574	7.40212911163634	6.8855662021074	0.297444233008855	0.261286765951186	0.658881274511238
Merged-chr4-46508389-3	chr4	46507894	46508894	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029077, intron 5 of 5)	intron (NM_029077, intron 5 of 5)	19065.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	4.43435246653829	4.34682070720019	4.79470596502854	4.23965004630642	4.49195476914554	4.71802712336258	-0.0925662196393834	0.842079303867693	0.963002495523594
Merged-chr15-27665277-2	chr15	27664777	27665777	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	16265.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.8555866370129	7.78050597445146	7.86652735611829	7.73703382205743	7.85116619719408	7.96850775254312	0.027998855689484	0.897299679579012	0.975979061797612
Merged-chr8-88306690-2	chr8	88306190	88307190	+	740.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007406, exon 4 of 28)	exon (NM_007406, exon 4 of 28)	12486.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.8860917433993	3.0950231869672	3.24304189707302	2.9344210018854	2.8211847783692	2.91424746338038	-0.897437890987054	0.200083433360988	0.588889204172492
Merged-chr6-129350151-4	chr6	129349649	129350649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-95.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	6.72962219048893	6.94970222313521	6.87238984864949	7.06803346026004	7.34449107577151	6.79315536579736	0.377152203962177	0.167939209452548	0.544133240143592
Merged-chr5-118465516-2	chr5	118465016	118466016	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95203.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.68562614913273	3.96813467914143	4.02450590645955	4.00638063723402	3.60904509965406	4.19109391337446	-0.902694314800356	0.121454397124958	0.466185878585365
Merged-chr16-32246455-2	chr16	32245955	32246955	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001185162)	promoter-TSS (NM_001185162)	570.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	5.57671451511076	5.30796324036668	5.07921105054066	5.7007894065378	5.03145225223903	5.41344301257694	0.121862379369544	0.760919103873923	0.941046607439565
Merged-chr6-118455187-4	chr6	118454681	118455681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361901, intron 1 of 5)	CpG	325.0	NM_028335	72720.0	Mm.212572	NM_028335	ENSMUSG00000030145	Zfp248	2810037F07Rik|E130106N01Rik	zinc finger protein 248	protein-coding	5.40201035104411	5.73702152749775	5.30377036765693	4.61040195606468	4.70108641737858	4.83977053257821	-1.66847469065099	1.61346301484955e-05	0.000605834975359213
Merged-chr4-132796363-4	chr4	132795881	132796881	+	973.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033308)	promoter-TSS (NM_001033308)	-17.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.40037535179447	7.16091321113762	7.10034814699435	7.76016369963194	8.05142179491232	7.34657883952219	0.774957810755916	0.00523739793084326	0.063195099627263
Merged-chr5-34238682-3	chr5	34238187	34239187	+	883.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015039, intron 2 of 12)	L1M4|LINE|L1	49637.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	3.93345707582449	3.7943184167049	3.48680356663026	3.23678371582919	3.54636313104297	3.38140951227309	-1.27106817688692	0.0423409699288826	0.257869206778787
Merged-chr13-51881952-3	chr13	51881455	51882455	+	910.3777470000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35280.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	2.5389624192329	2.46854935942403	2.53183674132794	2.53105933332002	2.50874305874345	2.66718426354982	0.321326732673041	0.67781376641304	1
Merged-chr7-19498498-3	chr7	19498007	19499007	+	802.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9824.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	5.19179858262228	5.4668761983939	5.51027644145361	5.77739675617457	5.74825666150023	5.57321203798259	0.596799395603903	0.0736942483195811	0.35673692560217
Merged-chr10-40349836-4	chr10	40349336	40350336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291816, intron 1 of 11)	CpG	528.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	6.38250313679184	6.21040524024623	6.35757205101898	6.45533672944081	6.65159793114845	6.43624792012694	0.340163694084833	0.212057010812311	0.604420229358776
Merged-chr1-149960356-2	chr1	149959856	149960856	+	904.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	B1_Mus2|SINE|Alu	934.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.11091231372716	7.54805331394134	6.7364686933023	7.3936475156437	7.4777857244417	7.11325193588531	0.230288940586006	0.446958704183401	0.806159145464037
Merged-chr13-60601884-4	chr13	60601385	60602385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-62.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.17615328162402	7.17651168856829	7.30165869485339	6.98392785801688	6.86433397223264	7.0498666951708	-0.38384660274971	0.108515859661178	0.440135883533379
Merged-chr1-173441376-3	chr1	173440871	173441871	+	695.527771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20767.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.19188991543599	3.49929109247987	3.52902116716157	3.38017184646592	3.39462971680958	3.07754003206653	-0.448306074876028	0.493224924359565	0.831208279358962
Merged-chr7-118119268-2	chr7	118118768	118119768	+	756.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019419, exon 6 of 6)	3' UTR (NM_019419, exon 6 of 6)	-3121.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	5.63151791862271	6.06651050439654	6.07523961096095	6.1122233276002	6.52106328564344	6.46484672000696	0.748677923869369	0.0192715802985659	0.157566046328297
Merged-chr2-154943271-2	chr2	154942776	154943776	+	697.049988	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-50370.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.04426452745667	2.98881399695982	3.39133581268705	2.88385861658221	2.65906258893443	2.91065146628664	-1.61424702695961	0.029929917066582	0.208594399805357
Merged-chr10-57746460-4	chr10	57745963	57746963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38460.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.42509063382212	7.5472259712396	7.24754557853103	6.95641049034433	7.32121007483421	6.80828574658451	-0.531404164000857	0.0490110154535909	0.281274165772379
Merged-chr2-155397841-3	chr2	155397354	155398354	+	859.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019825, intron 12 of 13)	B3|SINE|B2	15998.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	3.80685577005963	4.07391130634785	3.89567218801232	3.81476601630154	3.88382341655068	3.91513663425312	-0.193737331999034	0.706094679696685	0.922878730238431
Merged-chr19-5844480-2	chr19	5843980	5844980	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	998.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	8.29816314082804	8.2878474175096	7.99107467974116	8.33514139738008	8.52554328205843	8.30264638164043	0.264677595667367	0.233635727588736	0.629871747706181
Merged-chr4-103283232-2	chr4	103282732	103283732	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163494, intron 1 of 7)	intron (NM_001163494, intron 1 of 7)	7631.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	4.8221010236898	4.70009779726857	4.78101026369517	3.81159008650929	3.73375659084903	4.33626985099355	-2.20360229337583	1.90937439103201e-05	0.00070143586900217
Merged-chr1-149891270-4	chr1	149890768	149891768	+	987.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	31171.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.7328509518206	4.74318251917336	4.73294532274959	4.51240644736473	4.27533882867023	4.79809724151546	-0.494676742217642	0.255768326936342	0.652762828432113
Merged-chr18-36742906-2	chr18	36742406	36743406	+	766.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028036)	TTS (NM_028036)	1681.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	2.97528395083033	2.79471515750066	3.2020533441805	2.99233812850834	3.05568863740834	3.32575944914982	0.591623251936093	0.398212057649998	0.774929344051196
Merged-chr10-89744271-4	chr10	89743761	89744761	+	676.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-730.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	5.00096615916232	5.2772963375293	5.04315519928293	5.57571470178001	5.60103864164389	5.21691938983538	0.729559867838438	0.0457889570021259	0.270385887036611
Merged-chr1-60158598-4	chr1	60158086	60159086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22013.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	4.47776914808667	4.50867395307909	4.36273552909038	4.86093254200046	4.98549242308362	4.73678272950281	0.982254052354471	0.0175528980995512	0.148004931759956
Merged-chr18-9380866-4	chr18	9380345	9381345	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	69309.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.53958754163081	4.877415801109	4.50035205806343	4.59627063943727	4.3237859358936	4.65061452882737	-0.329982091084665	0.457063616323997	0.811993709825292
Merged-chr19-11818437-4	chr19	11817916	11818916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	987.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	8.38924134939032	8.69205361650444	8.0109416726121	8.27452737578238	8.36173504489045	7.95572131550855	-0.26183522321873	0.324924913986517	0.71780685615767
Merged-chr4-141670471-4	chr4	141669967	141670967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6352.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	8.52412222159874	8.54922233210245	8.01931087395223	7.74515950581114	8.09733635457236	7.48054171128156	-0.820962498951992	0.00314386415958647	0.0436573179223751
Merged-chr13-56334998-4	chr13	56334487	56335487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27913.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	7.12606992058667	7.42305368968015	7.46856409385712	6.77723060787688	6.81638905513786	7.09938137193164	-0.675202642612583	0.00923006629112346	0.0952045811270362
Merged-chr3-65188026-4	chr3	65187516	65188516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-87.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	6.07233359466823	5.89016324181117	5.70088770576369	6.05952002876448	6.29763540641689	5.89799831014048	0.347886755526983	0.271937799116689	0.669370500204161
Merged-chr1-39969225-4	chr1	39968730	39969730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 3 of 29)	intron (NM_001252202, intron 3 of 29)	68317.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	3.1850412373906	2.64430240863668	2.79691347266238	2.96251216277093	2.60438284569861	2.9344708771061	-0.267879888427526	0.735850719691421	0.932936187992169
Merged-chr14-63178047-4	chr14	63177558	63178558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360211)	promoter-TSS (NM_001360211)	-171.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	5.45369941492137	6.01375857261093	5.9583131265484	5.93253107902455	5.80724844415472	6.16693138630041	0.244964036018581	0.474608904573782	0.821621923057844
Merged-chr6-31356675-4	chr6	31356150	31357150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42123.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.96416076223505	4.67272335431218	5.13928890457489	4.67495864152942	4.45455297920233	4.6833464496088	-0.760435407483647	0.0715445967614897	0.350858143464767
Merged-chr4-156200208-3	chr4	156199680	156200680	+	857.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015783, intron 1 of 1)	URR1A|DNA|hAT-Charlie	638.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	5.69102467900571	5.80332388735799	5.57219928637691	6.02480451766041	6.16218285232466	5.803723081	0.56101000159535	0.0742380325775512	0.35836852205795
Merged-chr5-43788564-4	chr5	43788079	43789079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6430.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.22459341846062	5.19479875990895	4.9937133012765	4.77552269440851	4.3943121670036	5.0924684802778	-0.822825558455464	0.0545654757631236	0.299986819642134
Merged-chr17-53582024-3	chr17	53581525	53582525	+	921.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-2101.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	4.19306431559911	4.44209417088759	4.22229661109916	4.66361644871481	4.64340247016982	4.47644161801576	0.771844614334868	0.0819836809600367	0.378718446338826
Merged-chr3-127763274-4	chr3	127762783	127763783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17244.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	5.64703704028469	5.11537671430992	5.34051379180156	5.38111559404892	4.97072531607251	5.21242817986492	-0.389222734722235	0.314323367304551	0.708700303644741
Merged-chr4-154968204-5	chr4	154967740	154968740	+	855.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172990, intron 1 of 18)	PB1D10|SINE|Alu	4117.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	3.40204103771044	3.02952038474194	3.38933438680436	3.94954737637822	3.29794043021942	4.05776629413326	1.86380905066315	0.00672409455472874	0.0758950704978119
Merged-chr7-135651432-2	chr7	135650932	135651932	+	641.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-467.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.88367807358642	5.65336979513435	5.72697114067489	5.29057671714957	5.41448867082673	5.65943359639066	-0.570240792132988	0.0862616606307115	0.389075252480499
Merged-chr18-7868061-2	chr18	7867561	7868561	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282093)	promoter-TSS (NM_001282093)	-771.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	5.34670082859588	5.6188658788651	5.6075199558392	5.50525626624452	5.82500425370504	5.52926580977594	0.208390057042826	0.539242751592342	0.855810922857494
Merged-chr6-128630646-1	chr6	128630146	128631146	+	595.333313	f0_balb.idr	Intergenic	Intergenic	-7712.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	4.04440966102767	4.26839544772363	4.16918881226703	4.21451951287332	4.16197280223895	4.0449869034368	-0.052909263311542	0.911451429963759	0.980098870307889
Merged-chr1-128357590-2	chr1	128357088	128358088	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008567, intron 1 of 16)	ID4_|SINE|ID	2117.0	NM_001313695	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	3.10495402925753	3.15801601818078	3.00296362803627	2.98476128218223	3.11114159882885	3.24866090376384	0.0972201393512932	0.882855633567196	0.973321423742277
Merged-chr9-119323749-4	chr9	119323156	119324156	+	892.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1229.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	7.58792357948282	8.08938111529621	7.77617651774684	8.01641433943914	8.22834913456022	8.13607239300717	0.414953523069119	0.0893870059385848	0.397209191907296
Merged-chr5-115506624-4	chr5	115506138	115507138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133915)	promoter-TSS (NM_133915)	-38.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	6.83299561618623	6.49969415724989	6.84197128582323	6.71874333373971	6.62262121480909	6.85757077424517	0.000809347837021311	0.997608155572722	0.99951942247262
Merged-chr9-50522803-4	chr9	50522321	50523321	+	934.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011220, intron 4 of 5)	intron (NM_011220, intron 4 of 5)	5820.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	3.73462217315021	3.71866194275318	3.94281542351528	3.90700910927226	3.76366619977521	3.91572457119084	0.205584120052779	0.693773163008004	0.919037099765495
Merged-chr12-116462001-4	chr12	116461517	116462517	+	839.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-23703.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	4.53665977392829	4.67074347142243	4.89254871965261	4.64082158319778	4.47484646836297	4.45329235747809	-0.41651848003245	0.32867075880735	0.720880314701793
Merged-chr14-31593222-4	chr14	31592704	31593704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15821.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.79152796448676	5.09269613721922	5.44077771289958	5.92234077912767	5.48822685534409	5.41146068656163	0.286337766178391	0.467032602543246	0.817749374019291
Merged-chr5-112287325-7	chr5	112286848	112287848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	10657.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	6.87521533119857	6.88669530446909	6.6229054086505	6.89930604618261	6.75868171309047	6.76426260394653	0.000117014719225408	0.999635433942486	0.999920050950963
Merged-chr7-16018513-6	chr7	16017951	16018951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-18956.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	6.68943639173748	6.48870877938779	6.69883132655375	6.38827189615924	6.48932818280148	6.31880729855603	-0.352861197044804	0.18871903728156	0.574222837446979
Merged-chr10-30621273-2	chr10	30620773	30621773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2907.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	2.58738837034893	2.57849945300477	2.76381199815305	2.5807001453702	2.50193584325851	2.59301808161464	-0.491368456907067	0.521540908371569	1
Merged-chr17-67223942-1	chr17	67223442	67224442	+	641.0	f0_c57.idr	intron (NM_001357625, intron 1 of 32)	L1MB5|LINE|L1	130517.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.05763981271481	3.29261591931464	3.16758200599869	3.73075554178932	3.98553189385562	3.65874764369564	2.42639517175197	0.000195817729114615	0.00492599220985195
Merged-chr11-120035031-4	chr11	120034546	120035546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	6735.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	4.57050298575299	4.45995058638442	4.86616784952349	4.71678806398408	4.36795641164126	4.42446093992919	-0.296786866217459	0.506225090724622	0.838348406755321
Merged-chr19-60946163-4	chr19	60945675	60946675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	MLT1A|LTR|ERVL-MaLR	56426.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	6.73886815066961	6.61320396226985	6.90137472831942	6.5819601225428	6.93717328815404	7.10055870867166	0.21328465518304	0.443998109596526	0.803903618750713
Merged-chr6-34863084-4	chr6	34862596	34863596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-50.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	9.13857291055261	9.45951350623275	8.69669187820489	9.00628430827955	9.62706078984575	8.77115657102963	0.0736464091844357	0.81057072373054	0.955054272231421
Merged-chr3-129970110-4	chr3	129969551	129970551	+	974.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001293644, exon 1 of 7)	exon (NM_001293644, exon 1 of 7)	155.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	3.86649605801166	3.95934009858818	3.86896139554489	3.53178642372975	3.23951850208847	3.51827371780673	-1.70044711094397	0.00364292526863506	0.0485770073321452
Merged-chr16-43354714-3	chr16	43354205	43355205	+	632.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	MTD|LTR|ERVL-MaLR	65491.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	3.80090282792644	3.68041919826501	3.35473213846178	3.62856121871317	3.33234013956686	4.00081019563244	0.170626060069224	0.789988213761591	0.949354986867048
Merged-chr11-59543501-4	chr11	59543032	59544032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	L1MB2|LINE|L1	846.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	8.84004289249569	8.9244237683518	8.3721547812701	8.33277803088947	8.78410833977732	8.27545777113782	-0.342254192870077	0.195776693718155	0.583438527663774
Merged-chr15-88822144-2	chr15	88821644	88822644	+	910.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029720, intron 5 of 9)	intron (NM_029720, intron 5 of 9)	2498.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	2.63844426988289	2.72985594339517	2.77721328953136	2.79760641659196	2.61940946272068	2.96770575284246	0.426234171888739	0.566117887013925	0.867186733679279
Merged-chr2-18772570-4	chr2	18772085	18773085	+	883.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11723.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	3.26281141126496	3.09802826619088	3.16947365652814	2.81735313865327	2.69424098708364	3.06972604175686	-1.55166030031817	0.0333048294600989	0.222648858820108
Merged-chr4-142166129-4	chr4	142165683	142166683	+	864.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109684, intron 1 of 6)	intron (NM_001109684, intron 1 of 6)	44025.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	3.17092360011935	3.36954040670839	3.52209075157781	3.86254735670794	3.63322941675116	3.23841552617032	0.904618479633566	0.162842601520697	0.536188662408322
Merged-chr10-60742223-2	chr10	60741723	60742723	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	10559.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	3.82209177857363	3.56724462331556	3.70362628808061	3.70395252256527	3.65672519061996	3.37703445835684	-0.369760438740336	0.52311964922379	0.847998047391645
Merged-chr10-7827691-1	chr10	7827191	7828191	+	565.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4779.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	3.19686125873367	2.99757684270089	3.15893450535482	3.016933347968	3.16641989198457	3.34045076017965	0.248701202286567	0.704738618092381	0.922514359670029
Merged-chr10-96430374-4	chr10	96429871	96430871	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-186630.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.19892983494433	3.2437977023011	3.6292443524898	3.38734485914229	3.439512477745	3.54816086016997	0.36325043106977	0.556772059905722	0.8637300661975
Merged-chr18-61099958-4	chr18	61099471	61100471	+	791.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	-5601.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.12978067626439	5.72107423769546	5.86173984352974	6.10398281204977	5.75072688683889	6.04031277959078	0.0856050772309091	0.791585369681202	0.949796307822746
Merged-chr5-21054735-4	chr5	21054241	21055241	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	1170.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	7.22327479871257	7.26864102065478	7.37803088816309	7.47242486138497	7.39993874367268	7.3143701259087	0.166222624584793	0.46834741254083	0.818547995183628
Merged-chr16-38239311-2	chr16	38238811	38239811	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	55513.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	4.30038120725135	4.5839788119654	4.54532119208951	4.37896639167066	4.5903453704883	4.35395197490642	-0.0672830787789085	0.880010438127224	0.972364498183256
Merged-chr2-57191025-4	chr2	57190522	57191522	+	938.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	9191.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	2.2356123533962	2.19803746930992	2.33777879664703	2.12150494403094	2.00118718095253	2.15181607875884	-1.26671107343198	0.164569395681922	1
Merged-chr18-36668921-2	chr18	36668421	36669421	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025291, intron 2 of 4)	intron (NM_025291, intron 2 of 4)	1390.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	3.95409637328249	3.83515960590322	3.64419287228356	3.68891826991434	3.78206389661807	3.71569485327861	-0.300798168722018	0.576524985064868	0.871585692229598
Merged-chr18-53944398-4	chr18	53943893	53944893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	82280.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	5.16830375585257	5.22353139365139	5.10246897407062	4.9018060034839	4.92937597198365	5.13318947661098	-0.392377718633386	0.283679399312525	0.681376161050487
Merged-chr19-34588369-4	chr19	34587899	34588899	+	923.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010501, exon 2 of 2)	3' UTR (NM_010501, exon 2 of 2)	4870.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	5.56423224409209	5.55601732952606	5.87609705804525	6.33333216705294	6.27002709552343	6.5270661202123	1.2378109369663	4.61476734385474e-05	0.00147573236413322
Merged-chr5-74195196-4	chr5	74194703	74195703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026878)	promoter-TSS (NM_026878)	-123.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.00908766298579	2.89758646823361	2.78748504502202	2.45211458617382	2.4195068319953	2.60561855930509	-2.64841798041259	0.0023027067578828	0.0344363091139309
Merged-chr3-14534342-4	chr3	14533843	14534843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163580, intron 1 of 18)	intron (NM_001163580, intron 1 of 18)	555.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	4.97055171779536	5.13287551756732	5.16384016841816	4.84283695175593	5.06684558632686	4.9169379303258	-0.290829919397639	0.439917969916664	0.801486598516034
Merged-chr5-21395368-3	chr5	21394865	21395865	+	888.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	22692.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.44794193205264	3.55345126747492	3.34809345997157	3.85386538306898	3.75415301847652	3.75902751523923	1.15336939419174	0.0426224125466444	0.258891842517983
Merged-chr11-120142769-4	chr11	120142289	120143289	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361697, intron 1 of 15)	intron (NM_001361697, intron 1 of 15)	8562.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	6.6785155717566	6.7450104271542	6.49434644002012	6.37228053700702	6.56141960637453	6.5537531488993	-0.242208153543405	0.363567497804534	0.749213045651585
Merged-chr1-64318126-3	chr1	64317623	64318623	+	896.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196734.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.47929856066726	5.44442205442101	5.31231325613254	5.12089907360795	4.92084359206916	4.75232815255662	-0.970367517680528	0.00876554983791995	0.0919003958407479
Merged-chr17-13008900-4	chr17	13008401	13009401	+	943.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	1062.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	6.63880684186136	6.95306917601904	6.94101266421088	7.25633659378041	7.09208038476501	7.29420467539307	0.55248277866462	0.0301334934739372	0.209539338540813
Merged-chr12-37248768-3	chr12	37248252	37249252	+	907.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	7113.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	3.9211631453533	4.30187373162136	3.85592106910814	3.22399325680255	3.24052008274407	3.29753440820617	-3.07384432768306	4.12383379814954e-06	0.00018689322585862
Merged-chr12-4546526-2	chr12	4546026	4547026	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	BC1_Mm|scRNA|scRNA	22413.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	2.9246321065571	2.84496956457621	3.02096594045268	2.67422840479025	2.81605377986381	3.14738607710117	-0.196250752290579	0.789005122484693	0.949092571737679
Merged-chr10-57796290-4	chr10	57795750	57796750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1706.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	7.27931733026973	7.41307830951489	7.03887332702894	7.33131807225619	7.5927044395988	7.12399171990535	0.167887659802426	0.524856556231399	0.848833934932934
Merged-chr19-3688683-4	chr19	3688185	3689185	+	709.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	5.13190872475474	5.13623214032237	5.79697844541045	5.3312716441823	5.66278903412006	5.44882924391918	0.21749133081646	0.579480546211456	0.872539716783315
Merged-chr9-107296645-4	chr9	107296141	107297141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-18.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	4.92797540501487	4.90886182840728	4.7545326997239	5.57313316208175	5.17819630209956	5.05831355841816	0.880933323642161	0.0242240443535102	0.18322659370205
Merged-chr1-86399524-4	chr1	86399011	86400011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10150.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	5.77845532561016	5.64604886450926	5.46074552615064	5.79434038417982	5.79144592078718	5.61407577064061	0.178714778558198	0.578738506823995	0.872437129840066
Merged-chr8-117254996-2	chr8	117254496	117255496	+	866.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2023.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.53570102103108	3.42145086590714	3.5478773797748	3.56931706855932	3.41855493607349	3.51055711301057	-0.0085997141927182	0.988010114007661	0.997268471577753
Merged-chr5-137856600-3	chr5	137856116	137857116	+	752.133362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133209, intron 2 of 4)	intron (NM_133209, intron 2 of 4)	1433.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	4.46888069457989	4.8074745935146	5.07557574271146	5.11507150087094	4.66904244523807	4.70975840897469	0.110419590492335	0.804050232961568	0.953557286986578
Merged-chr14-61697136-5	chr14	61696619	61697619	+	957.849976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14746.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.83155493518248	6.68577681317753	6.85136790596135	6.96679137854375	7.02588374058149	6.6044521924624	0.156963025242758	0.555626934481162	0.863289501518253
Merged-chr15-66577519-4	chr15	66577034	66578034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081409)	promoter-TSS (NM_001081409)	-38.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	7.83952133769979	7.93921940271667	7.64747755626681	7.90633517018318	7.68218900006476	7.58826711408401	-0.121369902197133	0.604403691818016	0.883076775922625
Merged-chr1-193170077-4	chr1	193169577	193170577	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016851, exon 8 of 8)	3' UTR (NM_016851, exon 8 of 8)	-3392.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	2.84644805603801	2.73771099499132	2.9239833175963	3.02333230903052	2.88846180157883	3.16858715225354	0.925463445923012	0.187013092667491	0.571917092105154
Merged-chr4-125123020-4	chr4	125122518	125123518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4863.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	6.03497395535621	6.01654163319632	6.10013350046777	6.33071144268354	6.18152658145209	5.95229941734451	0.210470529968169	0.472895259919519	0.820550293768681
Merged-chr9-14067613-3	chr9	14067083	14068083	+	692.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-208718.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	4.5874601494846	4.56241338446322	4.59270552110255	4.61963764139188	4.63173790898073	4.20087685312684	-0.167383249330544	0.706571544334804	0.923001162707983
Merged-chr5-52833281-2	chr5	52832781	52833781	+	984.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-854.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	3.95644069464584	3.93659632415958	4.40858825805832	4.20795904566396	4.01936064134651	4.58670305781982	0.478739554176168	0.361349968057138	0.747271302865552
Merged-chr5-121714934-2	chr5	121714434	121715434	+	777.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	B2_Mm1a|SINE|B2	3325.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	2.43167955626574	2.43448366344274	2.65852801589785	2.57895984452024	2.48160493567889	2.67100514665707	0.402643929461028	0.608867444742129	1
Merged-chr6-97316596-2	chr6	97316017	97317017	+	914.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-63737.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.67423320185497	3.4884950319528	3.39997450109843	3.58617588121538	3.41350389677425	3.58296916766919	-0.0208047859921007	0.971480903603039	0.99377981119604
Merged-chr14-61172887-4	chr14	61172406	61173406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172809, intron 2 of 9)	CpG	34449.0	NM_015788	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	3.66162081078071	3.70197219129637	3.65339468275186	3.28773137790067	3.39519326261197	3.72280078326304	-0.718193891885063	0.223050577560146	0.617907697321133
Merged-chr7-118175712-3	chr7	118175224	118176224	+	941.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 29 of 62)	L1ME1|LINE|L1	-46099.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	4.97720226118626	5.39861994982921	5.45217971303869	5.37878133983448	5.1910069677985	5.24406341836467	-0.0303120214499467	0.934924627844096	0.985727573165395
Merged-chr10-60374329-5	chr10	60373843	60374843	+	778.664978	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25383.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.51444712333893	3.39815933350995	3.49354252934495	3.35295670891942	3.00657692154978	3.40248084842501	-0.835618482345763	0.191481961475291	0.578091345710453
Merged-chr8-56311238-4	chr8	56310628	56311628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	16576.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.2517343136412	6.49567603522209	6.12842622065502	6.21454041890071	6.26132519580198	6.23218423327882	-0.122495090545818	0.668388607025774	0.909177211642781
Merged-chr4-130783779-2	chr4	130783279	130784279	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8758.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.61647356749745	4.71846929507522	4.91638878283532	4.98549246133768	4.43368356286052	4.87540980196603	0.0667801155124804	0.878262710395758	0.971842464414451
Merged-chr1-52233337-4	chr1	52232853	52233853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113383)	promoter-TSS (NM_001113383)	-121.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	7.09774544097648	6.868190077025	6.91158003492956	7.1513717100469	6.88353196913033	7.01126015558061	0.0797942984601022	0.752103155335406	0.938077097810715
Merged-chr6-145248053-2	chr6	145247589	145248589	+	757.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2142.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	4.54266132401966	4.53482596755268	4.62187504993967	4.92995876146087	4.967070966594	5.05642295335612	0.963526380637341	0.0141114650827815	0.127490421998706
Merged-chr11-70433791-4	chr11	70433294	70434294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	1214.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	7.84088500929692	7.25859909538073	7.52370048804382	7.66004003886194	7.75980119295333	7.52018725039823	0.128246583946131	0.624010644915773	0.891774487190018
Merged-chr4-53239072-4	chr4	53238573	53239573	+	972.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-7123.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	3.67367675898031	3.72896466549619	3.59043616387785	3.45775164638429	3.39052008230312	3.49747024177553	-0.820673007143894	0.148055675209307	0.513480186012671
Merged-chr5-112254742-4	chr5	112254256	112255256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1064.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	6.37543456946793	6.22700309642513	6.39497594986392	6.54422032275591	6.70637611066922	6.78474058615633	0.562711020774452	0.0353064514692131	0.230667337770908
Merged-chr18-44387339-4	chr18	44386911	44387911	+	909.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	6911.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	4.11779292973744	4.11457973891781	4.48378076763517	4.43682143206561	4.31872341809297	4.69967764677154	0.644933012369824	0.171405677632112	0.549459630327571
Merged-chr4-120819487-2	chr4	120818987	120819987	+	889.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048168, intron 1 of 9)	L3|LINE|CR1	-3774.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	3.27840917248373	3.50221403688101	3.39986389652658	3.40518386524436	3.21560977804228	3.47073995531562	-0.139041602589546	0.81920183849588	0.957209935971094
Merged-chr4-156196777-1	chr4	156196277	156197277	+	704.0	f0_balb.idr	intron (NM_021604, intron 1 of 35)	CpG	711.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	2.89217709239392	2.91082347489877	3.20030083662512	3.07031014108969	2.8265563308058	3.04720941863769	-0.0938214489727843	0.892892472222262	0.975146620821922
Merged-chr14-73474956-4	chr14	73474459	73475459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35090.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	4.90634961932852	5.21336884939694	4.91085664234262	4.80105848602391	5.19777828042334	4.90082788502195	-0.0765503324557892	0.848545203206212	0.964356989789491
Merged-chr17-56935584-4	chr17	56935092	56936092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022328)	promoter-TSS (NM_022328)	-204.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	6.73957122630609	6.11751703161725	6.17324323760114	6.78344989038566	6.18383748413166	6.21232777086758	0.0721994972938357	0.836420468530953	0.962001762335242
Merged-chr11-115141060-2	chr11	115140532	115141532	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163753, intron 1 of 8)	ORR1A1|LTR|ERVL-MaLR	-7040.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	3.46183137790674	3.15492964293493	3.46376324163468	3.47571988886154	3.06777406233154	3.31436897761065	-0.281383207645116	0.665036670683521	0.907721942545399
Merged-chr12-98833199-4	chr12	98832728	98833728	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	62206.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.33775277191919	2.8417683591105	3.47764214848372	3.62596291876255	3.30332267423984	3.44145037126946	0.827516210456486	0.252591697510108	0.649948429823529
Merged-chr3-19219618-4	chr3	19219170	19220170	+	700.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045575, exon 9 of 9)	non-coding (NR_045575, exon 9 of 9)	31375.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	4.22954082963216	4.48739516814126	4.2944136886534	4.63218188180633	4.81354128610514	4.85381556690383	1.03166473606583	0.0172824593185035	0.146499477890591
Merged-chr15-81097667-2	chr15	81097209	81098209	+	689.75	f0_balb.idr|f1_balb.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	7338.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.7347958170172	3.79838999316581	3.60146771079896	3.75802123238191	3.56272399558168	3.82943582099407	-0.016797336628523	0.975543791600014	0.994523986908282
Merged-chr7-80860419-4	chr7	80859948	80860948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1660.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	5.4696053103289	5.25723430186265	5.20633335660639	5.34497676160668	5.48665434586569	5.16729070766076	0.0573456323597266	0.871727706023642	0.970250220039897
Merged-chr17-87307062-2	chr17	87306562	87307562	+	807.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 4 of 19)	intron (NM_028639, intron 4 of 19)	24176.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	4.81856961515034	5.13312082531812	4.67901683713536	4.47276258269634	4.56708174519797	4.34163339020815	-1.00782024970954	0.0207056683232748	0.16513728072875
Merged-chr17-27553103-3	chr17	27552603	27553603	+	858.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3471.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	3.61056994144719	3.39283144226566	3.40780475336052	3.50499380194835	3.16369452743781	3.69000193055541	-0.0448184549198844	0.943165839270435	0.987335800407922
Merged-chr3-136254902-2	chr3	136254412	136255412	+	686.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310749, exon 2 of 16)	exon (NM_001310749, exon 2 of 16)	71154.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.67003359669186	3.9927006011972	3.81582105564667	3.82315486206852	3.9113719546411	3.93545361828703	0.169446474068723	0.746964372525467	0.936426570480179
Merged-chr11-79963506-4	chr11	79963026	79964026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1139.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.73952984091825	6.68869305898708	6.25104532388611	6.51994074060486	6.61132071624743	6.17772355418248	-0.205288597891989	0.498177713009128	0.833856267944725
Merged-chr16-17760146-4	chr16	17759665	17760665	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145479, intron 1 of 6)	CpG	544.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	5.2614317762282	5.11170390501594	5.10472071543813	5.04255145775559	4.7344926431405	4.88133963385165	-0.593078392543114	0.117310489372024	0.457331522238446
Merged-chr5-140702292-4	chr5	140701808	140702808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	70.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	5.82564035761317	5.85169211598697	5.76940389449086	5.79089805709765	5.7865579312542	5.42646837356871	-0.22919568444735	0.47504852504798	0.821727753368561
Merged-chr7-44987519-2	chr7	44987019	44988019	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	RSINE1|SINE|B4	619.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	6.89823844271868	6.80832812129172	6.96139766530517	7.04436637227588	6.94228555079831	6.96479508630925	0.149441513732314	0.537739914880613	0.854779024899439
Merged-chr8-66400201-4	chr8	66399695	66400695	+	896.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	Lx8|LINE|L1	13894.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	4.18945881857236	4.03746003889528	4.66084617843565	4.46011097898376	4.32321633130906	4.7254336940944	0.497842328157912	0.313210407667429	0.707836272539716
Merged-chr14-27183093-2	chr14	27182593	27183593	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	MLT1A0|LTR|ERVL-MaLR	39100.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.88325815827357	5.97264620892246	6.06793195788672	4.81767773777543	4.96166028436418	5.33307841067094	-1.80504846154624	3.79111167543926e-07	2.30930322320608e-05
Merged-chr9-21424820-4	chr9	21424323	21425323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253893)	promoter-TSS (NM_001253893)	-85.0	NM_007871	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	6.9634149347613	7.31058310037672	7.12323519564109	7.15821389469792	7.30702446283697	7.35503576008122	0.197915942488616	0.425398285339359	0.793057614915362
Merged-chr1-64753885-4	chr1	64753374	64754374	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16124.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	5.54071631476496	6.00547753731053	5.61772853555527	5.79798405089146	5.95906221374163	5.62334295849962	0.114689961037675	0.736082276851936	0.933046642264646
Merged-chr12-99741813-1	chr12	99741313	99742313	+	739.0	f0_c57.idr	intron (NM_030172, intron 5 of 5)	Lx9|LINE|L1	-113839.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	2.68914665456369	2.61727641961256	2.85264748601147	2.89612888968338	2.71649995402083	2.86565490338739	0.561425153375669	0.442753057601842	0.803309923833629
Merged-chr13-80898663-1	chr13	80898163	80899163	+	678.0	f0_balb.idr	Intergenic	Intergenic	12568.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	3.59118976263216	3.58459290896179	4.18276911568303	3.67047244607007	3.60184414634017	3.85733333066359	-0.317152438674422	0.589558568151762	0.876892891421814
Merged-chr9-32674431-2	chr9	32673931	32674931	+	689.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21611.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	3.73886598775954	4.18199670467508	4.32320952519106	4.1288577161606	3.92923521864848	4.08380156153996	-0.150091225088618	0.775881490000713	0.944804182096302
Merged-chr10-22149459-2	chr10	22148973	22149973	+	884.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254744)	promoter-TSS (NM_001254744)	-203.0	NM_001254745	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	5.10810292622883	5.47958730205034	5.39276446693051	5.16084645526448	4.87506991830188	4.96292496940589	-0.687256307681846	0.0680877293675025	0.341417536171971
Merged-chr13-59836219-4	chr13	59835730	59836730	+	912.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13083.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.33190999374267	5.64477158487638	5.0277881108978	4.00434463466411	4.10887118422394	4.11336655082084	-3.20482023136701	5.90742405595173e-11	8.20609250162992e-09
Merged-chr16-22264825-4	chr16	22264340	22265340	+	878.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1165.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	7.72674190479472	8.05924610042489	7.25439556573242	7.7726694679862	7.93732292212792	7.78026751673063	0.144881467262206	0.603727395494805	0.882801720869038
Merged-chr15-99009011-3	chr15	99008514	99009514	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20877.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	3.78818378180176	3.6698885307735	3.93450888310679	3.59892982045504	3.73512456451879	3.81102783567	-0.262073956852551	0.626696674163043	0.892916235446326
Merged-chr13-64108482-1	chr13	64107982	64108982	+	543.0	f0_c57.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	-19281.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	3.59061384457556	3.63947942598137	3.7155556509747	4.63221922987981	4.72243610332219	4.52730123404162	3.00398707787022	1.39335055451845e-08	1.21783521996188e-06
Merged-chr12-54820200-2	chr12	54819700	54820700	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-24538.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	4.54558308089811	4.63139646566863	4.61282474395404	4.67555078257033	4.92696892619604	4.36707615510743	0.227892753059374	0.604318809122986	0.883029381406957
Merged-chr1-180262867-2	chr1	180262367	180263367	+	863.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6567.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.91295128344119	4.79659031809637	5.05163658640009	5.38545575963706	5.2181825959597	5.27974912546528	0.79460047489188	0.0293298679650552	0.205895524646614
Merged-chr13-30933174-4	chr13	30932691	30933691	+	794.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025588, intron 4 of 27)	intron (NM_025588, intron 4 of 27)	14570.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	3.52715811253375	3.71119241812708	3.76019876278194	3.73417611591142	4.08203092932359	3.88061391311397	0.798071129912522	0.142571818885483	0.503998466557196
Merged-chr5-134214593-4	chr5	134214094	134215094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 13 of 14)	intron (NM_001359852, intron 13 of 14)	15031.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	4.4440409771855	4.58780014649135	4.73374711963587	4.50411698717786	4.4088482879191	4.44021891018751	-0.338865002951911	0.429221624118671	0.795675108044076
Merged-chr17-69395423-1	chr17	69394923	69395923	+	591.0	f1_c57bl6.idr	Intergenic	Intergenic	11619.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	2.9142652426874	2.86772945169369	3.09605840572418	2.93922104450645	2.8395774395919	2.93691623332878	-0.262511554961657	0.703449071963223	0.922108924938678
Merged-chr14-14015162-3	chr14	14014663	14015663	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 3 of 11)	intron (NM_139227, intron 3 of 11)	2672.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	3.43191613821897	3.76590162590296	3.8226677535301	3.52758175907005	3.31055389364075	3.74721226849733	-0.521372826991141	0.386839886706143	0.767242114725069
Merged-chr10-111422818-4	chr10	111422333	111423333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50394.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	3.71468543807191	3.96755819551655	4.3709165970875	4.16804340986116	4.1975302935679	4.04290015540751	0.29937271653398	0.572909944828471	0.869934493236159
Merged-chr6-83079095-2	chr6	83078595	83079595	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197992, intron 2 of 8)	intron (NM_197992, intron 2 of 8)	705.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	5.10592710181069	4.86540658598873	5.2347925794805	4.99682563324462	4.59883806644575	5.07808861281033	-0.378289610252205	0.355691671163355	0.742489966989298
Merged-chr6-32511634-2	chr6	32511134	32512134	+	939.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	493.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	7.59007642645615	7.63620014516634	7.39208929746771	7.44908999444271	7.80108972236261	7.37101594404462	0.0226892511311534	0.927764279873117	0.983698457021454
Merged-chr7-17026483-2	chr7	17025983	17026983	+	924.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	L2b|LINE|L2	1431.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	6.68543125868183	6.48552486838276	6.61521634910961	7.25609100851832	7.33724205795255	6.85341186021886	0.891560146064241	0.000939766995100099	0.0171520360009408
Merged-chr2-45118303-3	chr2	45117795	45118795	+	890.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355288)	promoter-TSS (NM_001355288)	-853.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.39287514886431	7.95312935793852	7.44901860279843	7.7132686590987	7.99228603398062	7.37195808461742	0.137657643867423	0.635426191961752	0.89649427032154
Merged-chr16-94647327-4	chr16	94646797	94647797	+	891.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	ORR1G|LTR|ERVL-MaLR	35878.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.62958659764892	4.14605429835	4.0365312778199	3.65107065185628	3.80398610675023	4.10416038964765	-0.291821235385633	0.605574549584707	0.883581756351046
Merged-chr4-149662342-4	chr4	149661856	149662856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 3 of 23)	intron (NM_001029837, intron 3 of 23)	960.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.07450792052134	4.85983070744811	4.68580432249821	4.69079109841029	4.70692193576905	4.44227384646528	-0.604546792245435	0.15042056457156	0.517247822505929
Merged-chr10-111473679-2	chr10	111473179	111474179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152558, intron 1 of 14)	CpG	452.0	NR_152558	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	6.47074720513193	6.09026541294696	5.97722514213013	6.3445324608248	5.70812247639068	5.88967363353743	-0.329570225242803	0.342424145482165	0.731306390936577
Merged-chr9-35047703-2	chr9	35047221	35048221	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 10 of 10)	intron (NM_009178, intron 10 of 10)	-69007.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.62898411696924	2.69141001884654	2.89161157640992	2.69828481453628	2.54845976147199	3.01972703964042	0.135201285212941	0.861112770182173	0.967789299492425
Merged-chr8-46923591-4	chr8	46923081	46924081	+	775.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-63306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	3.38963731310366	3.140436101448	3.73112907099289	3.523872899351	3.75596890588259	3.70204534208421	0.821370483527094	0.190577429943268	0.576988383226797
Merged-chr19-29493428-2	chr19	29492928	29493928	+	628.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28559.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	2.75030993588096	2.92932424450029	2.8773067487128	2.87811291101685	2.69071722081415	2.70079657098123	-0.493000309880342	0.499083136507056	0.834241540056632
Merged-chr13-112343788-4	chr13	112343276	112344276	+	815.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	55258.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.358307446746	4.98268828777022	4.79981004177649	5.36890477806638	5.42087641878614	5.37018356765688	0.617425012921636	0.10694509476933	0.436454439973323
Merged-chr12-31997057-4	chr12	31996573	31997573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 2 of 10)	MamRep605|LTR?|LTR?	-46828.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	5.26286619503467	5.08523964652887	4.76520718805174	5.1995026034757	5.34633005501466	5.27526852099786	0.428909271107206	0.259542627642715	0.657131020381498
Merged-chr8-77444287-2	chr8	77443787	77444787	+	945.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72769.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	5.64457541787213	5.51216524048015	5.50474890459255	4.89193487110238	4.96571874294277	5.10001776499162	-1.16411301310031	0.000908006552947327	0.0167301614830915
Merged-chr16-10486943-4	chr16	10486437	10487437	+	983.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	-1241.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.41413913213526	4.44408646252865	4.7974642736907	5.09175496833724	5.25893810310029	4.78624056840965	1.18394661461205	0.00496220481070172	0.0609079713658163
Merged-chr16-90197021-4	chr16	90196529	90197529	+	807.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23713.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	4.77865416550764	4.64731514022693	4.85916386717335	4.86251685626213	4.64088070926367	4.88803228210381	0.0799335124736286	0.842095212987073	0.963002495523594
Merged-chr5-90897618-4	chr5	90897141	90898141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6258.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	7.03743799710222	7.18641106596414	6.77729120309546	6.77783460592106	6.6277245308446	6.78928519181762	-0.450723042654549	0.0855742481871085	0.387360572470511
Merged-chr10-95533521-4	chr10	95533031	95534031	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	18369.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	6.83146967672694	6.82434792292823	6.91273280360338	7.05805353588701	7.33368337795309	6.75783960977142	0.35207251757568	0.195123680892879	0.582787221560878
Merged-chr11-115185132-3	chr11	115184619	115185619	+	989.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 2 of 6)	intron (NM_025400, intron 2 of 6)	2197.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	3.5637370621956	3.56986588659403	3.73534853793523	4.27738883533115	4.05848041222411	4.19681906419241	1.77969733614914	0.000732976110972714	0.0141638356344212
Merged-chr8-117254036-2	chr8	117253536	117254536	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2983.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.67170469116009	3.22003918643302	3.35576583526895	3.40796221255735	3.88448197126558	3.75629041913269	0.932833138267004	0.14226901564244	0.503569859348993
Merged-chr17-24413829-4	chr17	24413344	24414344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	669.0	NR_033554	654822.0	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	6.59141146578729	6.70871364058368	7.0052337008439	7.04427108937012	7.17247022887235	6.9560339214594	0.455073357544625	0.083177644551732	0.381519875685051
Merged-chr8-25016246-3	chr8	25015748	25016748	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027194)	promoter-TSS (NM_027194)	674.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	7.86582548492968	8.11104609182351	7.55980292952655	8.05602921700175	8.28590163861897	7.98001145371149	0.346628162049044	0.168934077063119	0.545531802905646
Merged-chr5-92137824-4	chr5	92137322	92138322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019490)	promoter-TSS (NM_019490)	-97.0	NM_001359195	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	7.63527855021152	7.51872158138244	7.45071825254415	7.36019023190816	7.19307308888691	7.27725075061172	-0.389030180618966	0.0901898270612591	0.39934627129168
Merged-chr14-63117668-4	chr14	63117179	63118179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4783.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	6.7347728078589	6.56514805181014	6.47260108669182	6.7012546607388	6.68587440635857	6.45705349730189	0.0403096429200715	0.880446109233316	0.972540920690587
Merged-chr6-28483840-2	chr6	28483340	28484340	+	941.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	3492.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	3.32559097259954	3.21276676821924	3.50607179161055	3.6003148344539	3.50582784440357	3.52324400744572	0.747692956950648	0.206716325452329	0.597313895543352
Merged-chr13-99005993-1	chr13	99005493	99006493	+	557.0	f0_balb.idr	Intergenic	L1ME3Cz|LINE|L1	-21428.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	6.42364540478051	6.51296111187009	6.58033910580918	6.61399902402268	6.43942919572597	6.58916773128734	0.0671331829715984	0.799041897440411	0.952173893940882
Merged-chr11-50174786-4	chr11	50174306	50175306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026543)	promoter-TSS (NM_026543)	-45.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	6.824164818918	7.00091959241227	6.55162656385966	6.86549712295038	6.88556022488037	6.3977994111007	-0.105419806037972	0.71907349749245	0.927652639255676
Merged-chr2-32591234-3	chr2	32590720	32591720	+	767.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011373, intron 2 of 4)	B2_Mm2|SINE|B2	4142.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	4.17230550034767	3.95895977315657	4.37133332514006	4.20601693468736	3.97341199486555	4.13393021646544	-0.185682669290532	0.706974169142076	0.923161381966479
Merged-chr5-122394092-4	chr5	122393588	122394588	+	892.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	B3A|SINE|B2	2210.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	4.08543464056013	4.04980072761357	4.31195366976746	3.79113501739038	3.97246334033427	4.41750088556859	-0.200717232040327	0.702809005252994	0.922000148631826
Merged-chr11-88107548-4	chr11	88107025	88108025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	8379.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	3.40887750728914	3.15831181520152	2.98037445715658	3.40168894216133	3.51223036595765	3.48005781757506	1.03861673089163	0.119771974561159	0.462544623562839
Merged-chr1-165634593-4	chr1	165634091	165635091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347128)	promoter-TSS (NM_001347128)	-50.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.49727967139049	5.93350690951361	5.88785342846095	5.96868741597341	5.66120950829934	5.68213292040774	-0.640000374122924	0.0639803831054865	0.329680438285938
Merged-chr8-115585818-4	chr8	115585314	115586314	+	892.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	121080.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.16930826272317	5.24600131052809	5.43676141977133	4.74540102511247	4.68089242037969	5.01112690480849	-1.01935563896562	0.00777733225705695	0.0843944004232127
Merged-chr16-23226072-3	chr16	23225647	23226647	+	895.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152126)	promoter-TSS (NR_152126)	126.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.77968298817315	6.97209876064995	7.06359149104132	6.83347410435444	7.16038915122967	7.00448024607043	0.110074376299248	0.67048639145004	0.910029595108128
Merged-chr9-88706777-2	chr9	88706277	88707277	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	12810.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	5.22313768884047	5.35701204780154	5.26018416719605	5.08267781477385	4.87228318003027	5.32341331839613	-0.395278089011098	0.286685893085758	0.683936104264423
Merged-chr2-167892119-4	chr2	167891613	167892613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40214.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.53534715601123	3.75455527562392	3.63729238067821	3.61775043761835	3.40350933850346	3.75807917984144	-0.189493716695404	0.740679352387447	0.93463169199005
Merged-chr17-26229993-4	chr17	26229481	26230481	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	14261.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.61450713357853	5.73663092736633	5.62869410010472	4.9095753835551	5.2414811040238	5.0338888042266	-1.14517020274897	0.00131878570995338	0.0223717678601021
Merged-chr7-127165801-4	chr7	127165309	127166309	+	904.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27986.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	4.31803677880751	3.77833038617175	4.13144351845752	4.10643802927992	4.42463928908964	4.65313193090966	0.839942018801762	0.10900643644811	0.44106937375527
Merged-chr7-64038106-3	chr7	64037595	64038595	+	942.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99180.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	3.16623656170902	2.94903172109749	2.98111701616362	2.84494591163056	2.62971800001083	2.99455754008714	-1.04962268513717	0.154780603212798	0.524047218104267
Merged-chr17-71259921-2	chr17	71259420	71260420	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	51091.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	5.1170708175153	4.67795069781306	4.80456183135898	3.83256670192243	3.54466776142019	4.05370517165628	-3.15019910960624	1.05394747160952e-08	9.50128507233859e-07
Merged-chr13-21160873-4	chr13	21160363	21161363	+	947.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17808.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	3.62628569090754	3.88502802699438	3.51054883775495	3.52426944472474	3.54674608347941	3.46730517718967	-0.615474163107172	0.287223615594637	0.684545951100586
Merged-chr2-127142336-3	chr2	127141816	127142816	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355634, intron 1 of 2)	intron (NM_001355634, intron 1 of 2)	274.0	NM_001163528	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	4.6744642834013	4.72809452861751	4.97323829552796	4.44970821467896	4.35871338408797	4.93858095424956	-0.46632992767448	0.297956903900637	0.694756846287352
Merged-chr8-64947326-6	chr8	64946850	64947850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163747, intron 1 of 4)	CpG	165.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	8.44199934142579	8.56674403684242	8.3134114627548	8.26634796727038	8.49251930227152	8.13900637812276	-0.187084595494089	0.402392975125481	0.778019718782707
Merged-chr17-35050350-4	chr17	35049855	35050855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033444, exon 1 of 6)	5' UTR (NM_033444, exon 1 of 6)	112.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	7.58356406924394	7.5020289454029	7.64233950121036	7.94568251329757	8.24426200020625	8.10852921154176	0.764205121520929	0.000613124045097413	0.0123370455920704
Merged-chr2-180024856-4	chr2	180024450	180025450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177727)	promoter-TSS (NM_177727)	-37.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	5.76307206235928	5.5224812329712	5.93951984789377	5.75805872814901	5.45467721927253	5.57928219703539	-0.266597346328437	0.428282572034332	0.795121181950349
Merged-chr9-102626305-4	chr9	102625830	102626830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	34.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	8.12723749428238	8.55735485841989	8.20153329084474	8.35693390548032	8.37253130644811	7.84882169227534	-0.127444074835301	0.624576766486789	0.892121293039105
Merged-chr11-115496751-3	chr11	115496215	115497215	+	705.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008258)	TTS (NM_008258)	-4901.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	3.95732581947676	4.02395301947147	4.30792163055836	4.08657191014962	3.79842600096635	4.41373944808182	0.0430343425794146	0.935274402540507	0.985837609291391
Merged-chr6-134144908-3	chr6	134144415	134145415	+	803.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_001303102, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	109215.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.90611984823202	3.00843766915449	3.15600439911813	2.99755528614623	2.97019848879242	2.99791974336681	-0.160587876982296	0.811220744582058	0.955145794362684
Merged-chr7-81843138-4	chr7	81842560	81843560	+	870.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13629.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	4.56520329183406	4.21229202335273	4.50706028088254	4.61583386368125	4.80787550910366	4.44381243044548	0.508271920275054	0.256237676041793	0.653257691895505
Merged-chr9-22131297-4	chr9	22130782	22131782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	583.0	NM_001102404	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	6.52988823314992	6.50424421558493	6.6370166321905	6.30811495500411	6.35994124590082	6.26370423410725	-0.389871437297559	0.142351619706799	0.503715686878622
Merged-chr19-6911711-2	chr19	6911211	6912211	+	977.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026306)	TTS (NM_026306)	-1605.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	4.19507499606232	3.97151215380401	4.6225107239674	4.13789208279183	4.20728042954818	4.57821226571226	0.0893103219329517	0.86227642523344	0.967996224966109
Merged-chr18-34963641-4	chr18	34963137	34964137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9286.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	3.9269770424659	3.93822555973308	4.07467876907623	4.37947970268079	4.53385485758186	4.49854939361582	1.38105992648229	0.00299967454694064	0.0421260623969345
Merged-chr19-53903246-4	chr19	53902738	53903738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168492)	promoter-TSS (NM_001168492)	-113.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	7.60984628674026	7.64351006257271	7.68168079861971	7.74929308772172	7.70479055367802	7.68448603272171	0.101186080654931	0.637252807752506	0.897338937840938
Merged-chr6-72143542-2	chr6	72143042	72144042	+	900.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-20345.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.33428149092639	4.18686069449728	4.44626286742267	4.22582460530463	4.38498272122994	4.62905924745178	0.250485887014575	0.585331097485962	0.874958242973642
Merged-chr11-94687380-4	chr11	94686876	94687876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9883.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	6.7238420812564	6.73891349970876	6.34329832413813	6.36678884177481	6.57036626508541	6.38352447385274	-0.281783937425072	0.31749976181399	0.711322568148047
Merged-chr17-33816903-3	chr17	33816443	33817443	+	927.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357162, intron 2 of 5)	intron (NM_001357162, intron 2 of 5)	6420.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	7.73267544153106	7.81671170366104	7.86764636456053	7.29030728354791	7.44468605515914	7.2039305987847	-0.700352998804688	0.00218818914836517	0.0330617405840424
Merged-chr6-124359165-4	chr6	124358664	124359664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2078.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	6.201895642159	6.13685669635074	6.27547926863892	5.9488576791686	6.2354431886585	6.27693763359915	-0.0693157226749341	0.810944903555145	0.955096593239846
Merged-chr18-4335808-2	chr18	4335308	4336308	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	17145.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.61798827796132	6.11782550727092	6.16636015523886	6.11146792436741	6.19706149909367	6.44929298776107	0.457800670620932	0.159728060882906	0.532051740990585
Merged-chr5-35755540-4	chr5	35755044	35756044	+	975.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2336.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	2.90936815586104	2.64049899101498	2.91337427155364	2.91320149759249	2.77287356759228	2.92654492922842	0.224682061516667	0.756356349721145	0.939573416808291
Merged-chr10-26753325-3	chr10	26752834	26753834	+	900.138855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19178.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.28877874282011	3.17584466001155	3.09466657954659	2.85366840780985	2.77786969706781	2.79131153460151	-1.91776801648935	0.00809584644643232	0.0867979888048886
Merged-chr2-167752191-2	chr2	167751691	167752691	+	863.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	61014.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.61372501666741	6.68961486449835	6.78955728170443	6.68015380844711	6.61936947496871	6.8332154915103	0.0191039063384497	0.940720582947939	0.986881313555047
Merged-chr2-131166026-4	chr2	131165516	131166516	+	825.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-5935.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	4.57902644896299	4.51291299629621	4.70204205232219	5.32669364772388	5.32302632833542	5.46764684720083	1.694420628899	7.81604973135563e-06	0.000322918503498828
Merged-chr11-74476124-4	chr11	74475614	74476614	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	111443.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	3.55219584236845	3.53594525860653	3.7614075758615	3.30191698588131	3.5193177986421	3.47144826919067	-0.64668908123506	0.270267662294496	0.667262939156975
Merged-chr17-85488912-4	chr17	85488416	85489416	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129480.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.9529610665974	2.75738456719667	3.00468099948264	2.55176589569834	2.5258634338587	2.72168919240363	-1.7436374682699	0.0262321976054467	0.192325844537477
Merged-chr5-105731276-2	chr5	105730776	105731776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30466.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	5.95292551674146	5.49207668369807	5.06860008689152	5.2138839314857	5.22063263165354	4.65825301495865	-0.979181687513206	0.0293753273985385	0.206076237997361
Merged-chr7-45706078-4	chr7	45705579	45706579	+	943.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016974, intron 1 of 3)	intron (NM_016974, intron 1 of 3)	832.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	7.24743726100938	7.69948526038559	7.51563278663385	7.76378536605743	8.10907342583451	7.6217160848612	0.510491505022086	0.053603678044517	0.296847073212774
Merged-chr6-134433464-4	chr6	134432980	134433980	+	868.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	19052.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.89017687008162	3.70271148256076	3.7237462472112	3.98132699381994	3.95842440890557	3.56696326394024	0.255683843105499	0.643836755327178	0.899990653857957
Merged-chr1-64195469-3	chr1	64194944	64195944	+	869.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74055.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.50780646847438	5.52227341755307	5.72045186372877	5.45713514409107	5.61687879391424	5.73169884094272	0.0440903623214011	0.892602003021524	0.975146620821922
Merged-chr11-8566219-2	chr11	8565719	8566719	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	L1MC5|LINE|L1	98316.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.10668248893076	5.95095988701847	5.89231404618772	6.25041066047372	6.2480753736515	6.53812919316121	0.59488549160826	0.0426843778442895	0.259054377210266
Merged-chr4-155208098-2	chr4	155207598	155208598	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	14437.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	3.81969328083177	3.6696923344445	4.19140174312973	4.29573484049203	4.41681096040117	3.91965291572358	0.962290831990803	0.0757099536533918	0.36229025284676
Merged-chr15-100052375-2	chr15	100051875	100052875	+	628.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	B1_Mur1|SINE|Alu	13711.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	2.90279185033527	2.6942545034635	2.97301688951222	2.88327930992075	2.95111268845838	3.10197855249055	0.583113436376303	0.409903903907288	0.783037226945994
Merged-chr16-93604724-2	chr16	93604224	93605224	+	682.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-909.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	6.71021562145046	6.88830883099025	6.45308993025371	6.65575603546462	6.88070449671517	6.56863230019593	0.0167746413572877	0.952157361781908	0.989068549972429
Merged-chr5-102057226-3	chr5	102056729	102057729	+	895.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12692.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.96446785869713	6.06553837702119	6.27885215111648	6.39655883479376	6.70573732945962	6.52240046289522	0.748378087736665	0.00895105698858275	0.0931886547786385
Merged-chr7-127477092-2	chr7	127476592	127477592	+	818.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145589)	TTS (NM_145589)	5478.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	5.19795512838443	5.21963545911181	5.48217028078444	5.4325190083566	5.41523910510103	5.54438073541536	0.324888198040628	0.342232855177024	0.731283521951228
Merged-chr2-128818443-1	chr2	128817943	128818943	+	1000.0	f0_balb.idr	exon (NM_028248, exon 1 of 19)	exon (NM_028248, exon 1 of 19)	140.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	8.35158348598024	8.55561412099019	8.39148781467064	8.19001996035976	8.19909785297966	8.24862683298446	-0.316144731667819	0.125227365507066	0.47354314333656
Merged-chr15-86201207-4	chr15	86200695	86201695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13264.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	8.14535553027818	7.93873015444109	7.60447033324854	7.79405847598939	7.7278190526018	7.64172497354848	-0.284932052173881	0.245592407159886	0.642645689440908
Merged-chr7-27536807-4	chr7	27536295	27537295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	13534.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	7.42609727736782	7.41572378683237	7.24933454845711	7.72104098683332	7.6928122061544	7.23291001980042	0.302471445399423	0.233316775634654	0.629682827928185
Merged-chr19-60982077-4	chr19	60981546	60982546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	92297.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.21251191998875	4.23844270079022	4.2230486857978	3.98644176672847	3.9337396223047	4.00898208409774	-0.728539380293946	0.126397924641792	0.475300963888672
Merged-chr11-97702606-4	chr11	97702098	97703098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-836.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	6.82358178546942	7.30430920045225	7.20617063768348	6.85067400918909	7.44823679657631	6.96866362464976	-0.00136021915677864	0.996364834869227	0.999006183783181
Merged-chr6-72522545-4	chr6	72522056	72523056	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21835.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	3.44581813419202	3.47045563302103	3.43529155112155	3.75542866050864	3.75388181024654	3.56474387839836	0.881696297247615	0.118102703197398	0.459016755927373
Merged-chr1-151571440-4	chr1	151570951	151571951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	78.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.98094648408669	6.78524072008007	6.61969643466837	6.76746807025105	6.85924010735808	7.00873978652948	0.102738681343689	0.695748179129369	0.919291538728398
Merged-chr8-117343166-4	chr8	117342658	117343658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6012.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	8.17622343571809	8.08004589228157	7.79192539689221	8.00012355002889	8.2753844324005	7.80431178461384	0.0245943187434935	0.921162077249443	0.982526400261012
Merged-chr3-95996120-4	chr3	95995631	95996631	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023320)	promoter-TSS (NM_023320)	-292.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	6.61884156255606	6.36962851844942	6.34519397685363	6.44391218050677	6.2757048770556	6.26409023109002	-0.203263957185114	0.465695039322316	0.817146354802119
Merged-chr16-56031519-2	chr16	56031019	56032019	+	703.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1802.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	2.64054386437056	2.46970631334634	2.60442462103147	2.64703937110145	2.65266752219015	2.74012325382792	0.598534104949351	0.431016839533297	1
Merged-chr7-34390629-2	chr7	34390129	34391129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-924.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	5.99163602465846	6.34631056426962	6.40332904391171	6.28216333851493	6.5367174816463	6.27102604105649	0.202618121844195	0.496405066233964	0.833046085446241
Merged-chr2-45245686-4	chr2	45245186	45246186	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128244.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.82102477205537	7.23827113680541	6.95706142500082	7.00254453817365	7.28153192308762	7.13402782508655	0.190752559907656	0.469744215979053	0.819113892518233
Merged-chr11-52101434-2	chr11	52100934	52101934	+	768.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019411, intron 1 of 6)	RSINE1|SINE|B4	2610.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	4.28405956138656	4.37117376207555	4.32860424643132	4.32242849721262	4.21182590702168	4.39582315547951	-0.0621465029197556	0.889525449726006	0.974240173857916
Merged-chr13-23746558-4	chr13	23746023	23747023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175664)	promoter-TSS (NM_175664)	-211.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	8.34601511943557	8.62368316109701	8.20935417555528	8.12248174841861	8.60260276928718	8.35917625876887	-0.0400422211714826	0.870981644189842	0.970222087171093
Merged-chr14-9393587-4	chr14	9393100	9394100	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-490495.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.91280919634419	2.8948860555988	3.15060440921563	2.8472784270592	2.78196755121923	2.99735725282295	-0.543203260805305	0.438992041390907	0.800937323779458
Merged-chr1-173452564-1	chr1	173452064	173453064	+	713.0	f0_balb.idr	intron (NM_001013779, intron 2 of 8)	L2a|LINE|L2	31960.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.66086868996464	4.71946974714096	4.86320723557143	4.73527498632735	4.77772037972958	4.61954057328364	-0.0593485954502523	0.882473051195528	0.973184220613163
Merged-chr10-59879573-4	chr10	59879092	59880092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	1.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	7.63812235032627	7.65601199612054	7.84781419002007	7.81164216040601	7.96161168908866	7.78957427580604	0.213104748227306	0.336986386507853	0.726949528325002
Merged-chr10-111130952-1	chr10	111130452	111131452	+	713.0	f0_balb.idr	Intergenic	Intergenic	-33850.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.72282255691926	3.5396945004623	3.46158734958611	3.39685353512596	3.63734277049781	3.41804284986243	-0.313064602953094	0.596336682701507	0.879911021114935
Merged-chr2-147012138-1	chr2	147011638	147012638	+	544.0	f1_balb.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-861.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	6.34228212400416	6.4248329684636	6.3660169263413	6.56612600929499	6.63318058413443	6.55328504394671	0.33687830810995	0.196550409566897	0.584411999439208
Merged-chr1-13374244-6	chr1	13373698	13374698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008678)	promoter-TSS (NM_008678)	-115.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	7.95790006807711	7.7440834779083	7.57925970965676	8.13909496933085	7.89175386891205	7.79372929818212	0.252514598882521	0.294805074858375	0.691728256671312
Merged-chr7-6153425-2	chr7	6152925	6153925	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	2546.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	5.69636811595957	5.7283739615083	6.05788977387682	5.87554795274343	5.73282589326931	5.87237035770507	-0.00316521609450764	0.992005121186957	0.998363319124397
Merged-chr14-120478883-3	chr14	120478342	120479342	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029519, exon 1 of 2)	exon (NM_029519, exon 1 of 2)	381.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	6.66686559662638	6.473107033798	6.15778117023015	6.43390462438347	6.01866019239545	6.24034626365527	-0.363562699691074	0.238288525803162	0.634951642748382
Merged-chr7-101144480-2	chr7	101143980	101144980	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199012, intron 3 of 20)	(T)n|Simple_repeat|Simple_repeat	35705.0	NM_199012	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	3.39920610466293	3.4822556766487	3.64266144426773	3.31944876400672	3.54014671042478	3.94450330620444	0.393706645340048	0.520735300413862	0.846662720861138
Merged-chr19-4059894-3	chr19	4059427	4060427	+	860.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362043)	promoter-TSS (NM_001362043)	-480.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	5.41213206572111	5.33587328155318	5.8941172480794	5.18568468860991	5.13462660303248	5.68187895674878	-0.413448870908477	0.291345795476831	0.689051679650718
Merged-chr1-94035249-6	chr1	94034715	94035715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14722.0	NM_001310769	241159.0	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	2.97156936970067	2.74943344082747	2.97132094690794	2.72674523368134	2.5815423943378	2.67782501367419	-1.28370836898532	0.0884079493060779	0.394669705770703
Merged-chr12-4981501-2	chr12	4981001	4982001	+	766.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362349, intron 17 of 27)	intron (NM_001362349, intron 17 of 27)	64148.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	2.64746925185036	2.76130118046635	2.78490098315094	3.24122871872629	2.93033028858564	3.16253890085654	1.92845497505052	0.00912356530445877	0.0944573375455276
Merged-chr14-25481080-4	chr14	25480582	25481582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21897.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.81614247773028	7.70955462706654	7.62138534143219	7.4237361405291	7.74134167635843	7.30946779263042	-0.298006936430261	0.224437818090223	0.619198341102496
Merged-chr4-116993894-2	chr4	116993342	116994342	+	755.708374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009478, intron 1 of 9)	intron (NM_009478, intron 1 of 9)	571.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	4.297772868326	4.4515768103013	4.34367716564321	4.3946109856182	4.38422902931358	4.1772914406751	-0.100337270133568	0.823785425128037	0.958451755471188
Merged-chr11-70221806-3	chr11	70221280	70222280	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-786.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	5.97823988636079	6.15360177430613	6.22913338787466	6.18601757333581	6.25873188863046	6.16567336960649	0.149534608493819	0.598868497834047	0.880844471295403
Merged-chr10-99441210-4	chr10	99440706	99441706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-167965.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.26118513397847	3.51429703831138	3.31702708740912	3.15809875121059	2.94249150478269	3.44254283958499	-0.739920330037755	0.27111992666338	0.668361183862025
Merged-chr16-28518359-1	chr16	28517859	28518859	+	1000.0	f1_balb.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46136.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	3.84319901761095	3.86269719983131	3.48519180036182	3.0111742705868	3.03595155852233	3.26262559892304	-2.78033124851195	6.75182871398049e-05	0.00203035684452822
Merged-chr11-97771611-4	chr11	97771116	97772116	+	853.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028156, exon 3 of 3)	exon (NM_028156, exon 3 of 3)	4302.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	2.87438287758261	3.03908458834155	2.92730019465281	3.12431712788169	2.92376396586447	3.17711173326724	0.568569032052771	0.404886576321292	0.779791650050306
Merged-chr6-120531919-1	chr6	120531419	120532419	+	573.0	f0_balb.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-620.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	5.39313286468173	5.88649618185317	5.34350877103693	5.37989156027951	5.40724205389376	5.69420916852845	-0.156527457162034	0.67008961145052	0.909884567136783
Merged-chr17-8316209-2	chr17	8315707	8316707	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134114, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	-5089.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	2.22762587133723	2.22816891338905	2.21013904835056	2.2844231762444	2.1268192671682	2.41484049183368	0.365164363844831	0.673423098231896	1
Merged-chr4-134094631-2	chr4	134094131	134095131	+	959.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	442.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	4.60945094110483	4.85071859072653	5.23679109696898	6.97634647903487	7.49563363656254	6.97580813670596	4.1547524987375	2.56425866908303e-29	1.25509903139448e-25
Merged-chr12-3960046-4	chr12	3959555	3960555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008895, exon 3 of 3)	exon (NM_008895, exon 3 of 3)	5110.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	5.49440556788719	5.18574037607516	5.14926502398427	5.39945850279982	5.37676824180694	5.070650981813	0.0139352387496687	0.969786538275247	0.993210926740941
Merged-chr11-95840800-2	chr11	95840300	95841300	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-1495.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.5332603779371	6.49245698884818	6.52089440907741	7.278206345871	7.23731132076739	6.56232594451977	0.871501541701781	0.00330876571501994	0.045267309703285
Merged-chr17-15825571-1	chr17	15825071	15826071	+	624.0	f0_c57.idr	intron (NM_178615, intron 1 of 2)	CpG	1015.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	5.36973293666746	5.43379343208158	5.33262703882908	5.46900572162473	5.68843404671412	5.68295784045968	0.448128959230188	0.173735088815885	0.552964436759062
Merged-chr5-96982138-2	chr5	96981638	96982638	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-15551.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	5.28804080936011	5.33600475853054	5.52468539968723	5.58730839032411	5.28768417021147	5.44515408297229	0.122008109584771	0.723101542773729	0.928989158354973
Merged-chr11-20982187-4	chr11	20981725	20982725	+	947.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109099.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	3.51564787694006	3.28072104115022	3.28498281242288	3.1277494830731	2.88374172514318	3.30051065886376	-1.1051114940605	0.102897571594178	0.427752854576755
Merged-chr5-3368444-3	chr5	3367924	3368924	+	802.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	24531.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.16893602100032	5.05971499704833	5.32951914844657	4.96231442219592	4.7615724342854	5.01174005198921	-0.590415599054621	0.117567934800492	0.457794860113807
Merged-chr10-86883474-4	chr10	86882954	86883954	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	104449.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	6.52166713157303	6.77743726788168	6.78494707967634	6.95716571362064	7.19270264645798	6.84356570602411	0.491309599124068	0.0640663406911692	0.329853818983591
Merged-chr15-80042359-4	chr15	80041850	80042850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	7.33792594745575	7.26253470792045	7.28682422257837	7.33174238745014	7.48456888198752	7.08378066400945	0.0365445749649428	0.88101459520535	0.97262624933271
Merged-chr3-105959308-4	chr3	105958814	105959814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027432)	promoter-TSS (NM_027432)	-184.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	7.10903700920559	7.61525234424733	7.29394888344539	7.35165515772799	7.43379800367116	7.1059839661113	-0.0750697388406459	0.778759778484954	0.945520893795831
Merged-chr15-99815052-4	chr15	99814524	99815524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	5125.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	6.30963421870572	6.35977435891168	6.17734362068531	6.79476192362395	6.61968954140279	6.94615518286722	0.79292231563868	0.00373397032063144	0.049426694629192
Merged-chr4-47319664-4	chr4	47319143	47320143	+	986.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33579.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	5.51642794261963	5.31173490688157	5.68867320442703	5.44521603048814	5.35966969937775	5.84482456711523	0.0916889858571649	0.797707344333037	0.951799370596145
Merged-chr17-87276249-1	chr17	87275749	87276749	+	541.0	f1_balb.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	6565.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	4.23399282448501	3.90433350868879	3.85461013008091	3.84707294261213	3.49868644572501	3.71166624331435	-1.03863057517485	0.0618565538242511	0.322875611982202
Merged-chr3-95632452-4	chr3	95631970	95632970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019561)	TTS (NM_019561)	7490.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	7.42999528508907	7.40201289389948	7.54886349013842	7.48525664311058	7.75404879385358	7.35589132011653	0.136794487837311	0.571052768487487	0.869351752937534
Merged-chr2-91085351-2	chr2	91084850	91085850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-11328.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.51926613830445	7.58411370726514	7.7669998894663	7.68102884000602	7.90741224408774	7.93392303933583	0.320971379279133	0.160955865157856	0.533655406039239
Merged-chr2-172393624-4	chr2	172393133	172394133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276423)	promoter-TSS (NM_001276423)	-161.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	4.91909045219384	4.93529651261582	5.31762944955615	4.62669219952507	4.9326406914509	4.57790968503932	-0.718953393952654	0.0885797110632775	0.395097325014913
Merged-chr3-88625005-3	chr3	88624490	88625490	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	3596.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	6.54881842598845	6.35070135091734	6.77757213977285	6.0034258195022	6.1300034486648	6.31241376282618	-0.680878962181675	0.0204539046772633	0.16386756213997
Merged-chr11-11746319-3	chr11	11745785	11746785	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	56108.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.44832026241928	3.33343035307093	3.37034136345989	3.11296269955109	3.03329497591041	3.33143545483458	-0.955469097319311	0.133380915500829	0.488525905290653
Merged-chr2-174327628-7	chr2	174327134	174328134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-134.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	6.55803865363259	6.3129695196863	6.38257075746119	6.6497732425266	6.74157677845222	6.76549964311693	0.471109251012081	0.0746263462720083	0.359551407618178
Merged-chr6-72372752-2	chr6	72372252	72373252	+	598.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	B4A|SINE|B4	-5780.0	NM_001331167	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	3.78896868914316	3.35108195314329	3.85379035105037	3.50638669287445	3.06649695151103	3.87644292800706	-0.525636164422165	0.449134858052375	0.807594795348397
Merged-chr9-64702436-2	chr9	64701936	64702936	+	963.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	35320.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.72122411259258	5.13453984043694	5.34458204935799	4.92825110383684	5.21439543465668	5.04034968503074	-0.713935349862697	0.0685400671510554	0.342445172781615
Merged-chr13-34233169-3	chr13	34232656	34233656	+	788.8222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	70192.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	3.01785965173535	3.02407469682572	3.11888254095728	3.01378542755681	2.91025225839437	3.0755369286541	-0.252812881060022	0.703447271697861	0.922108924938678
Merged-chr11-86739133-4	chr11	86738634	86739634	+	871.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	18433.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.41529281419979	5.57594318047104	5.53111266572839	5.22878451168343	5.45747754084639	5.64679497414488	-0.114194050726959	0.73857330438577	0.93405489119572
Merged-chr4-135918988-7	chr4	135918486	135919486	+	999.4127199999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-1740.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	6.95795834543169	6.96008623825607	6.91603978910172	7.02157262669386	7.11964198858708	6.79465019365312	0.0754431877332439	0.762484154240654	0.941561416958418
Merged-chr7-69985370-4	chr7	69984874	69985874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	352448.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	4.36630292528307	4.82550308071806	5.10041786466943	4.97795674671103	5.01100339546332	5.13231084548736	0.549022625176334	0.205418793443896	0.596047563330878
Merged-chr10-8873499-2	chr10	8872999	8873999	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B4A|SINE|B4	12571.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.32208008231672	7.45705785286801	7.16160293731467	6.99731963807593	7.3239825967878	6.97890504870569	-0.306091476904773	0.233061388833377	0.629455587763793
Merged-chr9-61627997-3	chr9	61627479	61628479	+	853.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255613.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.28613320183051	3.19633247604042	3.05934377270311	3.01117402362139	2.70533911713648	2.88237042186088	-1.53723311675639	0.0339717491355239	0.225474403344775
Merged-chr12-70975715-2	chr12	70975215	70976215	+	619.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011184, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	1092.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	7.51863967964835	8.12874880235215	7.49404052679437	7.6085156244293	7.91161686597459	7.6406433220911	-0.0374464504603625	0.893648773588687	0.975265071347118
Merged-chr13-93305740-1	chr13	93305240	93306240	+	606.0	f1_balb.idr	intron (NM_147176, intron 1 of 9)	intron (NM_147176, intron 1 of 9)	1983.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	3.20165937995369	3.06239281656948	3.10514472127568	3.30928063403953	3.00296278679994	3.23620446063919	0.256848129795764	0.694620883405909	0.919217788511748
Merged-chr1-153532391-4	chr1	153531883	153532883	+	719.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 4 of 11)	intron (NM_028749, intron 4 of 11)	17331.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.71260731059547	4.56352000944596	4.98603357326157	4.72009233711183	4.30683631769548	4.65860099906677	-0.451692222247371	0.308398093346154	0.704469935667044
Merged-chr11-73133654-2	chr11	73133142	73134142	+	633.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	4652.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	7.11184297754565	6.99659965906606	6.68870856318257	6.94849721439684	7.21497478162836	7.12547581205694	0.226036205145763	0.39041262431576	0.76958978415218
Merged-chr6-4847884-1	chr6	4847384	4848384	+	641.0	f1_c57bl6.idr	Intergenic	L1MEg|LINE|L1	-55436.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	2.89213330315602	2.91064406900026	3.08977742261178	3.14706355004067	2.85470707739964	3.04586952513443	0.259090516350134	0.706384592651282	0.922959194348248
Merged-chr1-172316071-2	chr1	172315636	172316636	+	836.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	3769.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	3.52757430348906	3.20041499789686	3.71077877819973	3.10542684516638	2.86312622282994	3.20980848042217	-1.83928634201763	0.00889953472935212	0.0928216536997988
Merged-chr11-86724167-4	chr11	86723675	86724675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 8 of 31)	intron (NM_001003908, intron 8 of 31)	33392.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.60449471148761	5.76454783689826	5.76971430000585	5.37625233503785	5.83412782699988	5.50476281362231	-0.208366871242791	0.540481353762789	0.85632302227606
Merged-chr13-95494997-3	chr13	95494493	95495493	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16338.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	3.88585115820584	4.01707537582876	4.24684532741936	6.26430821919472	6.15984691611023	5.98852189736306	5.30628755454937	3.66968834506127e-22	3.59232268018657e-19
Merged-chr2-22789812-3	chr2	22789307	22790307	+	563.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	L1MB7|LINE|L1	15480.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.38566627019258	5.35763202143555	5.75532407917534	5.8611069692233	5.97853332805037	5.63278966154099	0.632047263725234	0.0605286936755512	0.318587980837558
Merged-chr6-50074295-4	chr6	50073785	50074785	+	974.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-35956.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.3125183691498	4.62769433325538	4.15362014344676	3.93514819288722	3.96900726389534	4.17521741815753	-1.01527943372174	0.040038180501658	0.249115776331759
Merged-chr19-15990321-4	chr19	15989830	15990830	+	773.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	L1M4b|LINE|L1	5255.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.92519307290377	4.16164619432233	4.26210601519582	4.2900082468041	4.18684022626069	4.49395100046671	0.559012024461995	0.244688294884738	0.642068217632906
Merged-chr8-68117709-4	chr8	68117212	68118212	+	683.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143138.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	2.8454053174647	2.84051744781364	3.11822270268751	3.24910067868193	2.95736939875279	3.13319345291421	0.836323552793701	0.227305985818901	0.622402368069924
Merged-chr13-106760417-4	chr13	106759923	106760923	+	877.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	176535.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	2.72087206544966	2.85649142782672	2.85171795885344	2.61785291475029	2.5371558542759	3.03792001185598	-0.340145377220145	0.662639624039644	0.906804932599005
Merged-chr11-31851257-1	chr11	31850757	31851757	+	687.0	f0_balb.idr	Intergenic	Intergenic	-19683.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.83450917805074	3.90013744065136	4.17240267799153	3.49694553622288	3.27049265405172	3.39868014209733	-2.09885046829319	0.000471780219294703	0.0100424375766369
Merged-chr3-135689911-2	chr3	135689411	135690411	+	880.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	1636.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.60200405357632	5.37284787823741	5.19578725831876	5.84999328220081	5.94894420225916	5.85273039129325	0.874059619183581	0.00847358540119786	0.0897378253866452
Merged-chr7-102065278-4	chr7	102064804	102065804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286689)	promoter-TSS (NM_001286689)	-139.0	NM_001360748	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	5.53993841633388	5.8350948359892	5.86350613770314	5.81090933153334	5.86570645483345	5.80217182237849	0.142854934809617	0.64934021322604	0.902158965805849
Merged-chr4-101699072-2	chr4	101698572	101699572	+	644.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-18335.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	3.36898082555372	3.66248461133238	3.91648264679231	3.44654197251818	3.43952223716617	3.80110890005039	-0.329154764925491	0.588845735212369	0.876650937479947
Merged-chr9-55259979-4	chr9	55259477	55260477	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	23648.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	4.84408043590587	5.02500276550122	4.89004367081001	4.46796731843233	4.49781817900085	4.56526029144117	-0.978735658639636	0.0155711893958	0.136254866678486
Merged-chr6-73240315-3	chr6	73239812	73240812	+	914.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-8193.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	2.85195145427746	2.86155184353713	2.92065282992166	3.70803263997667	3.78240181162598	3.50037813961286	4.00876302449143	1.5954201834699e-06	8.13928403593892e-05
Merged-chr14-70100087-4	chr14	70099587	70100587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360404)	promoter-TSS (NM_001360404)	-6.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	6.87161247854662	7.48083021152992	7.66682423354878	7.44499355849752	7.54149458959273	7.68065492255277	0.260920591931732	0.36898469732681	0.753809303364759
Merged-chr5-36989086-4	chr5	36988574	36989574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011716)	promoter-TSS (NM_011716)	-92.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	4.89248321086058	5.03664764897237	4.6901412263291	5.34380430211588	5.17968290007341	5.03699632390954	0.644685996724281	0.0951780407734879	0.411148363215922
Merged-chr8-107590043-2	chr8	107589543	107590543	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-1561.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	3.19023691321915	2.9846552146367	3.12263903381936	3.17165645928889	3.06797854593338	3.51746999153279	0.661229867929154	0.322135124263333	0.715589724600332
Merged-chr3-108900351-4	chr3	108899848	108900848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10340.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	6.56781881538726	6.4641382747745	6.33873289891382	6.39283452594023	6.48212337895544	6.52815035752754	0.00111426748268606	0.996676393759831	0.999127275997073
Merged-chr4-133853687-3	chr4	133853192	133854192	+	867.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21039.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	3.48690395761296	3.68991299887944	3.43879069701413	3.31026760424864	3.00731308083929	3.21976209545499	-1.49541177629459	0.0205675564580082	0.164367395382345
Merged-chr6-97212220-4	chr6	97211734	97212734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	1442.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	5.56936292457575	5.66718828412287	5.66619478808501	5.40501029631368	5.30915814194667	5.29088883044838	-0.569366145948559	0.0820840941097234	0.379026265409649
Merged-chr11-104379915-2	chr11	104379415	104380415	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	62376.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	2.69138057609817	2.42421630328747	2.64919974293649	2.74112374941503	2.21618367743581	2.4639041213121	-0.565970310387618	0.528941751364686	1
Merged-chr13-32934757-1	chr13	32934257	32935257	+	665.0	f0_c57.idr	Intergenic	MLTR25C|LTR|ERVK	-30756.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	5.11377728298033	5.34807628618734	4.76648241595871	5.16138777614886	5.27356665530526	4.83504463912439	0.00675556711467588	0.986911510294973	0.997121435579972
Merged-chr10-34096692-4	chr10	34096200	34097200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178908)	promoter-TSS (NM_178908)	-181.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	4.74206052727607	4.90175440038979	4.7643005105505	4.5481677011856	4.60763753109696	4.9024305885135	-0.283779729782136	0.488227126346006	0.829018687202793
Merged-chr12-85347695-4	chr12	85347218	85348218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-8356.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	8.07039561107256	8.14051997078486	8.05415122100643	8.0748915265768	8.36005725236343	7.97599078538451	0.0917002800565382	0.684013942529216	0.915657391324866
Merged-chr2-5038019-2	chr2	5037519	5038519	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 6 of 13)	intron (NM_001356487, intron 6 of 13)	-25228.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	3.30039028414788	3.33071071920354	3.47794098529384	3.26268460304872	3.53770649717921	3.54786311849981	0.339080593727977	0.573082279842031	0.869947175774374
Merged-chr7-25708183-1	chr7	25707683	25708683	+	1000.0	f0_c57.idr	Intergenic	Intergenic	10870.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	6.99627164248115	7.35507154127176	7.47061941922661	7.20956709876311	7.15470949158327	6.89247476375178	-0.278727558617703	0.296278752363335	0.693022144754045
Merged-chr2-129624262-1	chr2	129623762	129624762	+	1000.0	f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	28800.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.5778805135063	3.30048237044279	3.48344713838735	3.55978729246605	3.33804405633341	3.65878261141967	0.221853206549629	0.710479295177973	0.924358113435436
Merged-chr15-78332917-2	chr15	78332417	78333417	+	829.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	(TTTTTG)n|Simple_repeat|Simple_repeat	6927.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	4.0792871298584	3.97781203309572	4.11043740231459	4.20537809033549	3.84153516326104	4.58588022912819	0.505133568833567	0.339917044216586	0.729608383720945
Merged-chr18-39416918-4	chr18	39416417	39417417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70328.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.28466345025801	4.99288119634075	5.15696648867878	5.20840240274929	5.10980486386311	5.28485708422392	0.096555619468877	0.789927643467126	0.949311112850285
Merged-chr5-115282648-4	chr5	115282148	115283148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026504, intron 1 of 6)	intron (NM_026504, intron 1 of 6)	2946.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	7.3552835678316	7.21560764736573	6.92014531060648	7.10403492731048	7.18840523563052	6.74161187683644	-0.223229822996858	0.415371563194924	0.786402808010238
Merged-chr10-82900954-1	chr10	82900454	82901454	+	910.0	f1_c57bl6.idr	Intergenic	Intergenic	34328.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.81988485537737	4.83703562021246	4.95224151826776	5.56580308828471	5.64421542724299	5.36046779544981	1.37686462281398	0.000112356801424134	0.00312466067276047
Merged-chr9-99165030-4	chr9	99164532	99165532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24821.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.29423154810259	4.75895643134529	4.78484421450018	4.89692946139367	4.60653705933288	4.95570916795069	0.44802211568674	0.311888568752505	0.706762820695192
Merged-chr7-117470648-4	chr7	117470153	117471153	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89674.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	4.72783517870143	5.07026910874063	4.42248482160907	3.92541602847919	3.71335476907336	4.1072403763232	-2.39780836112455	3.62027267064332e-06	0.000166960554580555
Merged-chr16-56718526-2	chr16	56718026	56719026	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER68|LTR|ERVL	-1076.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	3.6520309040785	3.964800606399	3.78865156779377	3.4594511830827	3.51033520748833	4.13043752070072	-0.25368939628864	0.676489379835704	0.912525597578286
Merged-chr8-54528578-2	chr8	54528078	54529078	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 1 of 4)	intron (NM_029701, intron 1 of 4)	1420.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	4.4210109097169	4.40301246521455	4.4296435487417	4.17499427290206	4.01110521224258	4.61322926553427	-0.367861914379849	0.446823714935097	0.806122541261987
Merged-chr13-110560767-4	chr13	110560270	110561270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165726.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	7.07855439868182	7.34209658364393	7.13347703032204	7.09816441288565	7.30049161926974	7.02031884597006	-0.060210729271241	0.809574461545734	0.954749848816598
Merged-chr7-28215683-2	chr7	28215182	28216182	+	724.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13B1|LTR|ERVK	35366.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	3.77687672084154	3.52017483335052	4.02359368851615	3.86366308148086	3.75313297855163	3.95410539049245	0.23805450684854	0.666330246131716	0.908141259539205
Merged-chr14-50825568-2	chr14	50825066	50826066	+	891.5	f0_balb.idr|f1_balb.idr	intron (NM_009351, intron 51 of 54)	intron (NM_009351, intron 51 of 54)	17650.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.3987992826351	4.05561543696505	4.52079128721213	4.25759007944106	4.61997691671986	5.03489663072213	0.824913127449522	0.0990609982417547	0.419687756705699
Merged-chr14-14003000-4	chr14	14002492	14003492	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9499.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	2.97047628907521	2.89196040732647	3.0901734040038	2.89041360314518	2.90973149091366	2.80217215004566	-0.537055721131171	0.44092731642463	0.802131225979157
Merged-chr2-32424149-4	chr2	32423639	32424639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290558)	promoter-TSS (NM_001290558)	-73.0	NM_001290558	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	5.03801030257424	5.14614499015866	4.76835602305734	4.94140037935895	4.58378185758779	4.79518908161502	-0.504352854990876	0.215199071033839	0.608548056852407
Merged-chr17-35867710-4	chr17	35867218	35868218	+	809.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1103.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	5.87066053087054	5.7939597866629	6.58575383901289	6.08886050610733	6.48384979505033	6.76074103670711	0.567855778085875	0.124225353587198	0.471601469447498
Merged-chr5-136169639-2	chr5	136169139	136170139	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178751, intron 1 of 2)	PB1D10|SINE|Alu	1017.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	4.93748312551152	4.94561526108665	4.97525184669128	4.69709129297034	4.77773520211029	4.47945111245407	-0.64021546461977	0.111492705908368	0.446017634826102
Merged-chr8-3646850-2	chr8	3646350	3647350	+	852.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-8920.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	2.53463870329963	2.83696296617151	2.77282428893643	2.48553354992425	2.46159399875381	2.96065773827877	-0.356967237814332	0.665937686110003	0.907947624137969
Merged-chr1-171815958-4	chr1	171815451	171816451	+	919.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-23746.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.45152136370111	4.28829596923676	4.53336632837794	4.09046706295416	3.91219436750107	3.97528226864759	-1.20911629221516	0.0115701482787996	0.111452755033846
Merged-chr11-51604803-2	chr11	51604303	51605303	+	729.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010448, exon 4 of 7)	exon (NM_010448, exon 4 of 7)	2078.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	3.79092186957308	3.53277117658093	3.58916824081406	3.54642572020052	3.6279941250377	3.65978550999274	-0.115910690764178	0.835657931821384	0.961787999211487
Merged-chr8-123027909-4	chr8	123027405	123028405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	14379.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	8.12506482345401	7.983784331434	7.7940800021824	7.82316235545369	8.15279036921953	7.64916178541813	-0.11006358395773	0.660361237797287	0.905929432585967
Merged-chr8-35683721-3	chr8	35683226	35684226	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-94706.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	3.66626454744693	3.61172448113376	3.53210138227813	3.39059551778384	3.07440889048307	3.19656285889066	-1.52090343315971	0.0159526609382677	0.138681276604817
Merged-chr2-33918533-2	chr2	33918033	33919033	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-30587.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.45598812406157	5.17343521954911	5.38967396631238	5.32870695522213	5.60782936907489	5.26327749670813	0.152876680991349	0.667626176858774	0.908808672644454
Merged-chr5-140606719-2	chr5	140606219	140607219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-622.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.05347953141898	5.02380372436447	4.8157238061115	4.84201221903407	4.79169934288011	4.44636867666502	-0.579049264270039	0.160344791485999	0.532965919658045
Merged-chr16-19983115-4	chr16	19982610	19983610	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183390)	promoter-TSS (NM_183390)	-61.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	5.99084652768012	6.29605604750735	6.45125649470271	6.63287792641549	6.76555166012875	6.38035112454498	0.584596398720421	0.0485467584080896	0.279568044405863
Merged-chr1-92934538-5	chr1	92934086	92935086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015525, exon 2 of 2)	non-coding (NR_015525, exon 2 of 2)	178.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	7.60400279359495	7.89584179634752	7.8046313728249	7.69447117973495	7.84788271258532	7.48935153888645	-0.115979561704593	0.627488388541167	0.893285292753682
Merged-chr7-98716209-4	chr7	98715702	98716702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028410, exon 5 of 5)	exon (NM_028410, exon 5 of 5)	12955.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	6.17857683213756	6.18470356237937	5.75656728797223	5.7514245294446	5.91669296139732	5.45902818241234	-0.576905414918267	0.0872930455529102	0.391752318341327
Merged-chr9-70657262-4	chr9	70656791	70657791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-117.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	7.8606727831752	7.84671368391065	7.62163888267283	7.83370837646413	7.62488301416305	7.67812253203492	-0.103389635558083	0.647993433810925	0.901644689184644
Merged-chr17-47740508-2	chr17	47740008	47741008	+	661.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B3A|SINE|B2	2577.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.4569954286547	2.38811518271138	2.42303047157777	2.7801477339204	2.53529070640967	2.87585699234018	1.84807775482555	0.0249471316987176	1
Merged-chr18-23954715-4	chr18	23954229	23955229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027007)	promoter-TSS (NM_027007)	41.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	7.46926012249342	8.0436077119313	7.73218668361368	7.58522933639399	7.52380487542442	7.38800860034076	-0.390242038416121	0.130528635499139	0.482798128672315
Merged-chr7-142392032-4	chr7	142391531	142392531	+	837.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5a|LINE|L1	-4161.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	6.37495823276002	6.50400986985574	6.61965285768429	6.7436169666273	7.1422694623271	6.61097846661688	0.57834220896365	0.0434891660667653	0.262049860966283
Merged-chr13-105299412-2	chr13	105298912	105299912	+	956.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4927.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.35178982452219	6.33800609165591	6.61455567877844	6.04503049559821	6.60548061636182	6.30153850774782	-0.140252781750595	0.647658239667798	0.901510214793849
Merged-chr4-9074584-4	chr4	9074071	9075071	+	980.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-194722.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.54237002463643	4.80591371859363	4.38860562337418	5.03001342191871	4.68111284090107	4.72225339830123	0.508455006512416	0.243349369234054	0.640502592040103
Merged-chr11-26637258-4	chr11	26636717	26637717	+	977.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-43297.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	5.62265926255861	5.25632077998186	5.16609575845774	6.03523251693483	5.95208774884345	5.90962135267432	1.08584841684584	0.00141731901797641	0.0237049810749308
Merged-chr6-17667864-2	chr6	17667364	17668364	+	625.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007604)	TTS (NM_007604)	-26130.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.6487816536476	3.24990501194063	3.75892577862224	3.28558946913941	3.29909311121737	3.8271432713763	-0.2737356691315	0.675543263427328	0.912197928643375
Merged-chr19-46515551-3	chr19	46515063	46516063	+	936.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 6 of 6)	exon (NM_053100, exon 6 of 6)	13915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.97553852675373	5.16377178521754	5.57624022311614	4.9786269228678	5.08752228228297	4.98115066512765	-0.477323163524519	0.225011270678049	0.619917151532319
Merged-chr2-102878635-2	chr2	102878135	102879135	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23030.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.833057788897	5.54553337462902	5.87374625511487	5.75546438667251	5.79025761333573	6.04620699126874	0.197524946087956	0.538593092406519	0.855301907226781
Merged-chr5-114128267-4	chr5	114127754	114128754	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359940)	promoter-TSS (NM_001359940)	-36.0	NM_001359941	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	5.83284093321129	6.32862480552396	6.06431116117006	6.21042552082557	6.68090908584854	6.21360858469506	0.505069966980002	0.122260563786005	0.467734026035353
Merged-chr15-53141195-4	chr15	53140711	53141711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	204972.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.24662488015616	4.81041657309638	4.4412163269628	4.58306258082582	4.67146442532766	4.46388312812878	-0.701912707647811	0.131087158181208	0.483837071958386
Merged-chr11-98814085-4	chr11	98813585	98814585	+	807.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138660, intron 3 of 13)	HAL1M8|LINE|L1	-3996.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	6.8816101436518	6.78930372824877	6.23765049859319	6.83281081163666	7.31421538633532	6.65840423293814	0.463357573047016	0.157138778727635	0.528099014514685
Merged-chr8-18595037-4	chr8	18594538	18595538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173189)	promoter-TSS (NM_173189)	-93.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	6.42142407359533	6.77778299699447	6.69927305513531	6.65668179695997	6.77401410351267	6.19227790496158	-0.0998002454678145	0.741349993185947	0.934809943386314
Merged-chr11-106443759-2	chr11	106443259	106444259	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	44037.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	3.00093591447801	2.89205286287077	2.99094596782579	3.14575811140892	3.20965602495406	3.29456904660764	1.14961720807673	0.0814949053699595	0.377562811025812
Merged-chr17-17402433-4	chr17	17401921	17402921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025681)	promoter-TSS (NM_025681)	-265.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	5.50048932373964	5.32845214196923	4.95429061222874	5.16425477039099	5.00500803425787	4.81819217112615	-0.583221935659294	0.138624156781116	0.497532561229765
Merged-chr13-64431810-2	chr13	64431319	64432319	+	748.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	-734.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	4.4916227677084	4.50674713098641	4.58737409248731	4.25297879670958	4.53990961908942	4.40355759535503	-0.290701872412938	0.506833691098039	0.838597859957521
Merged-chr1-74588214-4	chr1	74587703	74588703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310668)	promoter-TSS (NM_001310668)	-86.0	NM_001305652	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	7.08978610677503	7.27674748130243	7.01617807073925	7.09548590405067	7.11363918809419	6.91892739244236	-0.130824597735458	0.595511159174584	0.879549293510723
Merged-chr7-110629194-2	chr7	110628694	110629694	+	668.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009627, exon 4 of 4)	3' UTR (NM_009627, exon 4 of 4)	1537.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	3.19092252148044	3.16536953954241	3.21573229680253	3.16115303929812	3.17255621299056	3.39652106023789	0.21735212079534	0.729169073774778	0.930601789377265
Merged-chr5-121451887-4	chr5	121451404	121452404	+	850.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029912)	promoter-TSS (NM_029912)	570.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	8.48397716265843	8.80152725476677	8.35446753283307	8.05985075716154	8.62176333559278	8.48972811945845	-0.207578837807915	0.419972164576375	0.789419274660615
Merged-chr5-135794724-3	chr5	135794273	135795273	+	815.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16124.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	2.79298672559103	2.87867949211956	3.28910013585545	3.00865125218641	2.6406237111792	2.85354183859914	-0.752638013055296	0.322983216388093	0.716374449399453
Merged-chr2-173217709-2	chr2	173217209	173218209	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139519, intron 1 of 3)	PB1D7|SINE|Alu	1213.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	3.65845904441964	3.49514756792104	3.34683191812593	3.7596034280247	3.46369702931813	3.47980967471888	0.225108968463122	0.705379371125403	0.922756484933722
Merged-chr1-58393042-4	chr1	58392551	58393551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-85.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	7.89294543193368	7.86558714780615	7.84953701235863	7.97555471724331	7.64092997935152	7.96014535396738	-0.0102989897767424	0.96388725041863	0.991214503458405
Merged-chr7-88278990-4	chr7	88278480	88279480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	895.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	7.85572194549604	8.13194160806509	7.75331686167506	8.31907659346939	8.56226467755975	8.11315407342703	0.593453415724019	0.0153760289540494	0.134990666104763
Merged-chr6-149307965-3	chr6	149307454	149308454	+	801.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-1460.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.6687116115509	3.81350619682235	3.99566275545924	4.19411461864153	3.99221088672468	3.75763630030276	0.528966538758807	0.322539237757802	0.715978413663286
Merged-chr2-75981095-2	chr2	75980591	75981591	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030188, exon 1 of 1)	exon (NM_030188, exon 1 of 1)	876.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	3.65544689955145	3.66146314021841	3.73033864555009	3.53945282957809	3.55598920292929	3.89548323792523	-0.0550911384087683	0.921235036755596	0.982526400261012
Merged-chr13-51736561-4	chr13	51736104	51737104	+	916.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	57143.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	4.67046437156719	4.47183599315678	4.50759503905302	4.60450080512921	3.93998565316561	4.57448515045698	-0.38034389528102	0.443920659003883	0.803884349333946
Merged-chr8-90930351-3	chr8	90929851	90930851	+	636.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-1898.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.01321623036661	3.06688555531529	3.08083688220247	2.93486025582563	2.87806341708195	2.91486634677295	-0.69198868997761	0.305749600663695	0.701883343337569
Merged-chr6-51611840-4	chr6	51611325	51612325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66532.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.82051690167297	4.80280617750387	4.87109796525158	4.83358497376131	4.40644984366907	5.4194133507003	0.253650405476904	0.592487410616081	0.878046778323738
Merged-chr5-64317424-4	chr5	64316942	64317942	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	87085.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.33748590970663	5.36191964944366	5.190550060322	5.25038204045479	4.82299082357978	5.08398610427334	-0.507692853936418	0.173879261016188	0.553140727918843
Merged-chr12-31954425-4	chr12	31953933	31954933	+	951.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4188.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.45553496861638	3.42856814669799	3.35635330589883	3.95908685226573	3.65577550979333	3.96110982043053	1.5460933676136	0.00772824855529575	0.0839274478972916
Merged-chr1-51767739-2	chr1	51767239	51768239	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010863, intron 22 of 29)	intron (NM_010863, intron 22 of 29)	148239.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.56430314678078	2.55546038288296	2.68322284413935	2.45837837671874	2.47768334398185	2.69571043754295	-0.326487658357038	0.67507462020201	1
Merged-chr8-105855485-2	chr8	105854985	105855985	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	382.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	6.23855572044937	6.60371228830321	6.62846217298663	6.30649810782686	6.46711118462309	6.9120982613242	0.132570491238689	0.670813966897803	0.910175626534126
Merged-chr17-45620028-4	chr17	45619528	45620528	+	820.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17926.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	6.47303881002101	6.90853058807902	6.76045472879489	6.94036374181365	6.92850157123351	6.92172482578035	0.314545995117733	0.237174125001715	0.633631301431805
Merged-chr8-34145971-4	chr8	34145566	34146566	+	636.375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	673.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	6.8002704107694	6.98283716024537	6.81170514975157	6.92284215536719	7.1086840921001	6.87022419695063	0.164965038513183	0.512838780645654	0.842142798618015
Merged-chr10-53344098-4	chr10	53343613	53344613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	6427.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	6.09094677726866	6.38730927683008	5.96635021299	6.26870774608004	6.79109756657893	6.12476150055949	0.451405914781776	0.176881621802347	0.557498711626125
Merged-chr2-166820832-2	chr2	166820332	166821332	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085495, intron 1 of 38)	MTE2a|LTR|ERVL-MaLR	15251.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	3.53301683334131	3.34323064946501	3.26535137415996	3.49832018703174	3.03359431476686	3.45220592290885	-0.181517939378877	0.782002084173303	0.94634558043998
Merged-chr6-97397922-3	chr6	97397395	97398395	+	625.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	URR1A|DNA|hAT-Charlie	61391.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.22521693629298	7.35185043604959	7.26550555112099	7.3502550013035	7.56043303017981	7.25214934707257	0.176538319162168	0.45879087203087	0.813236440920954
Merged-chr10-88683627-4	chr10	88683093	88684093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-570.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	7.68441302245346	7.32074754942435	7.05583238270338	7.65632946513882	7.51311274571986	6.83895203990421	0.00766070680543962	0.98085726323581	0.995623353730457
Merged-chr3-60590700-3	chr3	60590210	60591210	+	724.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	89531.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.85579466489852	4.02573344384081	3.78826339332141	3.96506078517806	3.43169761640497	3.85884890219246	-0.411492163785943	0.472069610680702	0.820486447038473
Merged-chr11-75935928-3	chr11	75935423	75936423	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10032.0	NM_001291159	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	2.93682639963901	3.08018380239093	3.12291009830668	2.7738707182389	2.77703593552717	3.08218222453743	-0.809381339596885	0.254066738920005	0.651179145391095
Merged-chr7-3715455-4	chr7	3714961	3715961	+	878.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357394, intron 9 of 14)	intron (NM_001357394, intron 9 of 14)	4921.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	4.61136667075796	4.57044370151954	4.85768308588617	4.46687129934864	4.38899833280056	4.74479565050283	-0.355094880106174	0.410973567278799	0.783785606749474
Merged-chr8-84071942-3	chr8	84071440	84072440	+	693.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	5104.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	3.45679842998316	3.22669259234813	3.75268175883862	3.24184356900725	3.16262036437279	3.47901384258158	-0.746813135344417	0.245890532742344	0.642933081369606
Merged-chr2-84523284-1	chr2	84522784	84523784	+	857.0	f0_balb.idr	Intergenic	Intergenic	-16411.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.34356079325473	6.56092279441711	6.25661529438283	6.77286139599299	6.76491133702166	6.33710177878148	0.404449973357599	0.163739221116307	0.537791628272111
Merged-chr2-153338550-3	chr2	153338069	153339069	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7241.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	4.99068350027846	5.42745976372984	5.19072386934311	4.72091287203443	4.38797358166134	4.67733022087525	-1.39512033401229	0.000754748785178038	0.0145070771349259
Merged-chr15-86215631-3	chr15	86215110	86216110	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	1151.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.50337877564823	6.26100510465343	6.57786650324011	6.27729318446357	6.32573279054959	6.00221883530451	-0.376553626435713	0.196841975927564	0.584754678471847
Merged-chr18-34861138-10	chr18	34860605	34861605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007913)	promoter-TSS (NM_007913)	-102.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	7.49304882309885	7.13599902891554	7.33164547589241	7.31242068884325	7.19661796138807	7.33386641075041	-0.073810032042801	0.762293004038446	0.941552504399722
Merged-chr2-23156489-4	chr2	23155968	23156968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	-37.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	8.15193602465744	8.78874643731535	8.46417609411168	8.53141036048473	8.77909217349446	8.37577877942912	0.109551373631804	0.672834461643201	0.910966428144718
Merged-chr3-83823962-4	chr3	83823462	83824462	+	884.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	17646.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.03787869501256	4.7984345966563	5.02088438000857	4.71221041560827	4.79066752683897	4.91121190252637	-0.335480267938746	0.389907904948165	0.769401696657453
Merged-chr18-65504670-1	chr18	65504170	65505170	+	772.0	f1_balb.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	73673.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.57351220464514	6.64203915871687	6.08071579013058	5.32684459976343	5.49091794629652	5.66007884341983	-1.70134550063277	2.29645912392566e-07	1.47783272067754e-05
Merged-chr12-102286995-2	chr12	102286495	102287495	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	3354.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.47881030107343	2.57103161553282	2.5429840948225	2.58830328364085	2.40403741481275	2.74002958283726	0.274739301964087	0.728613875179815	1
Merged-chr10-81432361-3	chr10	81431867	81432867	+	863.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5194.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	6.86837438599577	6.69870577840033	6.39621641165584	6.98045703319645	7.19575856352535	6.64584845926106	0.452821878444746	0.124018701615631	0.471278757298044
Merged-chr11-62559116-4	chr11	62558611	62559611	+	963.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7380.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	5.82201069585073	5.75390074852921	5.73324295421335	5.54558731646247	5.49092498448842	5.36171428860975	-0.555052657311434	0.0814539572840749	0.377520240499822
Merged-chr13-41263798-4	chr13	41263310	41264310	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13966.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	5.82542545794812	5.56158855325244	5.94444993079921	5.80132090328347	5.40596536099948	6.0478059559033	-0.026943217688391	0.939562774629154	0.986720663284284
Merged-chr11-120618856-2	chr11	120618356	120619356	+	560.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	-911.0	NM_001347615	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	3.4233511319394	3.42215878756092	3.86019321986748	3.31545615157832	3.57112777401896	3.64888387755106	-0.215227255148987	0.72535629401057	0.929660924063207
Merged-chr8-126971111-4	chr8	126970603	126971603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172762)	promoter-TSS (NM_172762)	-24.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	5.81052983598579	5.61626429535124	5.581418060343	5.74867030025072	5.62135553136445	5.7257407488513	0.0320735843841014	0.919307488289363	0.982011519166154
Merged-chr7-137415010-3	chr7	137414516	137415516	+	884.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4260.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	4.60572491229319	4.30750583461064	4.66003025519665	3.99892273572693	3.92703085470846	3.93731633995939	-1.59969901943399	0.00104110154209845	0.0185657902089429
Merged-chr2-127398972-1	chr2	127398472	127399472	+	554.0	f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-26227.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	4.68478882706472	4.45951882311003	4.39508101815928	4.95496434833337	4.97174084445909	4.76808698954843	0.88467810274969	0.0329512216687177	0.221202521388516
Merged-chr6-127163017-4	chr6	127162510	127163510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-11962.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	4.10035250252302	3.87408157750852	3.94016254288896	4.1993556666701	3.9589084551268	3.68603307367891	-0.0156436083119324	0.976695682439703	0.994723308989508
Merged-chr19-11601481-1	chr19	11600981	11601981	+	909.0	f1_c57bl6.idr	intron (NM_026835, intron 3 of 6)	intron (NM_026835, intron 3 of 6)	3323.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	4.20806038700991	4.22926212346165	4.08575207943051	4.80102031905052	4.89227563341365	5.26415705950627	1.97894852213481	1.4391881752498e-05	0.000548642513472392
Merged-chr1-149841071-4	chr1	149840601	149841601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	81338.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.22368457919785	7.33052839412938	7.04524023234248	7.29640572214242	7.73385907934935	7.25723924174136	0.36597095027068	0.167506188649517	0.543407343177083
Merged-chr1-21036046-4	chr1	21035549	21036549	+	988.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	43176.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	3.40733542268341	3.70368767576087	3.32764902454618	3.22512637120977	3.20212224589104	3.28265817557408	-1.03553999588799	0.0980178483078453	0.417372146870641
Merged-chr11-95336836-4	chr11	95336362	95337362	+	996.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172543)	promoter-TSS (NM_172543)	-156.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	4.80025460139986	4.92682935423894	5.36727764663863	4.81746077380131	4.6190979960669	5.01081729720252	-0.49923982324372	0.237137120815521	0.633583969072276
Merged-chr2-83622005-4	chr2	83621468	83622468	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-22610.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	3.846858573623	3.7075841072928	3.48119913475281	3.81970119569996	3.77658735199311	3.61306147128532	0.159928485599811	0.7761778294969	0.94480820353868
Merged-chr19-23758971-4	chr19	23758465	23759465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	89.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	5.4915339728516	5.45450088244232	5.82667318257016	5.96639264028667	5.55774406635947	5.9563836922832	0.441736956107893	0.197359653004789	0.585357590633181
Merged-chr10-58497382-2	chr10	58496882	58497882	+	885.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	-555.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	6.17927705350471	6.43467932861123	6.553679435501	6.626049033793	6.80323793670171	6.9133015766603	0.62526174093904	0.023766768886898	0.181047817041199
Merged-chr2-120137617-4	chr2	120137086	120138086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	16989.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	7.3591032288363	7.49951341584444	7.2989322679043	7.31295892729	7.59827714662457	7.12164493197458	-0.0311436012867851	0.902522853402092	0.977534352809461
Merged-chr1-89454079-1	chr1	89453579	89454579	+	630.0	f0_balb.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-732.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.89523656930961	6.07760056609223	5.68065517326326	5.62859639285879	5.72088099711744	5.30720938302365	-0.590018151631583	0.0826981070491106	0.380436207266671
Merged-chr7-110005567-2	chr7	110005067	110006067	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037959, intron 1 of 2)	intron (NR_037959, intron 1 of 2)	1079.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	5.47312912274897	5.80160307998388	5.76287213759371	5.57782443385906	5.83425503533288	5.91985356217766	0.177741112688587	0.589252732290721	0.876779541179768
Merged-chr13-100671019-3	chr13	100670595	100671595	+	726.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	1614.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	4.98986209117334	4.96826472278693	5.00672599101258	5.17812242825699	5.36472816916292	5.4223553884035	0.695825018645507	0.0515389732719539	0.289506169446617
Merged-chr8-126497176-2	chr8	126496676	126497676	+	863.1666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22111.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	4.38820518888795	3.82159302672368	3.83196148234858	3.76418459722002	3.79576434013896	3.68233019068196	-0.919162972903152	0.102403238053212	0.426785305881877
Merged-chr10-88333628-6	chr10	88333114	88334114	+	983.677795	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	23461.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	6.99221196989559	6.93613272324827	6.98668999817805	7.35596885447068	7.43363620876832	6.98880947271794	0.471359250103728	0.063312014199947	0.327727287101306
Merged-chr7-126928866-4	chr7	126928354	126929354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-25.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	5.69119842240973	5.77456915014132	5.89050743619095	5.88236677222529	5.86670755277015	5.9515009769411	0.206872152268244	0.492059704641315	0.830914335947124
Merged-chr5-114667656-4	chr5	114667104	114668104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9183.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	5.93280310106447	6.04330086635122	5.73531577619443	5.73190396150983	5.7915981907337	5.74408080434306	-0.288183442663733	0.348790632610933	0.736694000216487
Merged-chr5-139384776-4	chr5	139384269	139385269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	4130.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	7.76167820042432	7.54083202753848	7.48703454627423	7.14921232634934	6.94324325078216	7.15221911842351	-0.780349053402635	0.00119184783612298	0.0206520772070223
Merged-chr19-42146828-2	chr19	42146328	42147328	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-561.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	5.73959871782447	5.32214594866856	5.59653189382214	4.93878753722964	4.90486251369744	4.71960807646737	-1.42892614420418	0.000179617074840745	0.00458453299489223
Merged-chr10-75833928-3	chr10	75833372	75834372	+	855.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010361, intron 1 of 4)	intron (NM_010361, intron 1 of 4)	1009.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	4.55828221848538	4.77181845323096	4.46108944790665	4.1311337298883	4.04518591260839	4.00140523193298	-1.46995683164857	0.00166531386383413	0.0268131228697154
Merged-chr13-80884786-4	chr13	80884307	80885307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042591, intron 1 of 7)	intron (NM_001042591, intron 1 of 7)	-1288.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	8.769114614016	9.29085669200497	7.92779802647609	8.57156216450448	9.24835309824938	8.35299171395351	0.00238535380999743	0.996995359894114	0.999305189450257
Merged-chr13-113619197-2	chr13	113618697	113619697	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	-633.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.18946027091301	3.2126689339564	3.18242038846107	3.13040821876195	3.32827545440217	3.01043421986883	-0.0983791192881457	0.880730815296351	0.97261801636666
Merged-chr2-35256344-4	chr2	35255857	35256857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001206367)	promoter-TSS (NM_001206367)	-2.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.51153969061028	4.40084759530189	4.42969594716343	4.20601155586293	4.11895420368683	4.02923536760257	-0.879729141554899	0.0556049596732642	0.303395244884785
Merged-chr7-81213226-4	chr7	81212712	81213712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008803)	promoter-TSS (NM_008803)	-592.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	8.32378384573301	8.01722845397552	8.13312286007773	8.14068804921018	8.14941252835185	7.98781902224531	-0.0952015518771458	0.665746482833341	0.907920503949149
Merged-chr2-130750704-4	chr2	130750204	130751204	+	952.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 20 of 36)	RMER10A|LTR|ERVL	-53185.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	2.74876416672601	2.73869555582497	2.69012353684524	2.87744247422944	2.81549280853767	2.94735464143821	0.776840079602652	0.278047763360577	0.675379445752769
Merged-chr5-115511699-1	chr5	115511199	115512199	+	624.0	f1_balb.idr	intron (NM_011223, intron 1 of 10)	B1F|SINE|Alu	5023.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	4.7557418109788	4.58715239592953	5.27427417961009	4.07931270927416	4.192686171042	4.56406043159879	-1.49102583707011	0.00239310720220546	0.03546316368319
Merged-chr9-44317103-1	chr9	44316603	44317603	+	543.0	f1_balb.idr	exon (NM_027909, exon 3 of 14)	exon (NM_027909, exon 3 of 14)	3179.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	4.63264535665503	4.17815958591059	4.30170413983251	4.16160863717442	3.87101601222169	4.13853525230914	-0.918058011442266	0.0652142901871824	0.332925373206643
Merged-chr2-150836112-3	chr2	150835668	150836668	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 10 of 12)	B4|SINE|B4	6402.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.81795303039728	4.9474780173547	4.80878375072292	4.21161806253385	4.62315250385515	4.42257098515516	-1.00356238483799	0.022147020259919	0.172757969606013
Merged-chr1-180922535-4	chr1	180922028	180923028	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12494.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	3.7459671955112	3.60461029206982	3.7905083745151	3.72863890005363	3.38292077790113	3.48896777962704	-0.60446870422525	0.292810357125775	0.689987941313513
Merged-chr14-104522268-3	chr14	104521764	104522764	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026047, intron 1 of 5)	CpG	402.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	5.66005424306322	5.43136832020429	5.33513626321612	5.65040057448906	5.33212084192149	5.23184599733661	-0.130913768652545	0.713019784371856	0.925337672624826
Merged-chr2-45099234-4	chr2	45098763	45099763	+	834.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	11014.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	5.91494394622404	6.19755138106122	5.97880574898781	6.12702080512824	6.33525288641801	5.94306072668996	0.198815653096802	0.516375993572207	0.844182059575175
Merged-chr5-23616144-3	chr5	23615639	23616639	+	790.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	432.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	6.76566270809752	7.32257993469373	6.80034141707758	7.05508867507532	7.1114005739193	6.74643175802776	-0.0155769447087589	0.957608710482612	0.98996830630481
Merged-chr3-18625690-3	chr3	18625185	18626185	+	952.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145208.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	5.10252626440232	5.44968343062808	5.19875483037489	5.16050547103202	5.19027825849907	5.38695196303229	-0.0428231680454928	0.906023385570401	0.978576016264467
Merged-chr12-110705969-4	chr12	110705468	110706468	+	968.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-9573.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	5.67963371162029	5.1513621703342	5.33560960678982	5.59554937119764	5.01915214287724	5.1678026264222	-0.248398726127353	0.534041291290528	0.852827033691807
Merged-chr12-3902552-2	chr12	3902052	3903052	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 13 of 17)	intron (NM_153743, intron 13 of 17)	10808.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.43109410953374	3.40464452976556	3.72570395153252	3.64156294310729	3.54903163435905	3.84221944049875	0.550826700741843	0.33973253972655	0.729397455488285
Merged-chr3-149103640-4	chr3	149103143	149104143	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-149008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.9238034818779	3.14545713783352	2.84238275705168	2.89273630818274	2.90583363375115	3.21100245034234	0.112337284040438	0.874529694810635	0.970754540400126
Merged-chr10-14103316-4	chr10	14102792	14103792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	136913.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.73958555262344	4.27566938115285	4.35455698011616	4.80955389004424	5.1221078258034	4.56478587171494	0.897724015247262	0.0529921612096678	0.294925614050003
Merged-chr19-10171970-4	chr19	10171474	10172474	+	805.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-10914.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	2.55594207652337	2.8311547557169	2.74545412712948	2.61931161404046	2.56678854356188	2.56616911508205	-0.738265189625453	0.338741131858843	1
Merged-chr2-91132267-4	chr2	91131764	91132764	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008653, intron 22 of 31)	intron (NM_008653, intron 22 of 31)	14120.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	3.64636075748916	3.78243396115158	4.13186064976048	3.57338100803215	3.55662189229717	4.02814584402564	-0.426361392061761	0.464622420267509	0.816459397744841
Merged-chr2-154594084-4	chr2	154593589	154594589	+	844.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	9584.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	4.52224840648116	4.54703995660551	4.54966433127371	4.55780517016185	4.82561690140868	4.95276996918699	0.581851380732028	0.162685719587834	0.536188662408322
Merged-chr19-4294579-4	chr19	4294085	4295085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 2 of 20)	intron (NM_001290818, intron 2 of 20)	-11448.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	6.42515732074953	5.91630071770984	6.90926899776617	6.81117477548277	6.63169126967892	6.63457050227881	0.354269376723627	0.302514906256466	0.699173943663909
Merged-chr10-41896588-4	chr10	41896087	41897087	+	895.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013370, intron 4 of 9)	L1MC2|LINE|L1	9148.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.83463109123176	3.78377095578092	3.68821445163638	3.67899583257045	3.79095831067907	3.75859193679715	-0.0954515979715782	0.856961558059628	0.966648789939674
Merged-chr14-55147018-4	chr14	55146499	55147499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30064.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	7.04940446661174	6.90687779945639	7.02067573574477	7.09054002626044	6.81603125114151	7.26946575718361	0.106772812405892	0.682464571315601	0.915096086868746
Merged-chr7-130726893-2	chr7	130726393	130727393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021314, intron 2 of 17)	intron (NM_021314, intron 2 of 17)	34337.0	NM_021314	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	2.50778805707154	2.36795328118471	2.73927094885926	2.71603981329187	2.39229774664234	2.29251328597897	-0.375298544808758	0.66890101706696	1
Merged-chr7-19318740-5	chr7	19318229	19319229	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8684.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	6.78331452341179	6.35315709928968	6.36327982919492	6.65365229693773	6.37468674386052	6.32310863641396	-0.0991567691206771	0.739124448817391	0.934160003144178
Merged-chr4-105260464-3	chr4	105259961	105260961	+	642.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103114.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.11538094639525	3.31383755693826	3.2474247987769	2.8934151973261	2.85970662873631	3.26374437657426	-0.973098734348848	0.161509871881023	0.534459252156486
Merged-chr11-49237808-4	chr11	49237310	49238310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6381.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	6.41314939922296	6.50424502472247	6.70258224751191	6.43852280535568	6.49206088051158	6.56936558369286	-0.0630354578084862	0.814002279264065	0.955984497572397
Merged-chr15-98832834-2	chr15	98832334	98833334	+	991.375	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-1326.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	5.18320405108387	5.01631357667133	5.01046133773912	5.09331658913801	4.99506000210603	5.68028429722075	0.418577430021691	0.301653567840807	0.698377118776631
Merged-chr11-49075834-3	chr11	49075333	49076333	+	768.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-754.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	6.82160770688351	6.43200513456174	6.70432237711265	6.85517888097656	6.93263595916104	7.04608868597363	0.440261824595007	0.0985168246649004	0.418490297463602
Merged-chr3-94891500-4	chr3	94890978	94891978	+	815.875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-4520.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	3.37937928523337	3.34922992648406	3.38857654286463	3.32570044400022	3.45919530131209	3.71710271839511	0.497033132919428	0.405675075002694	0.780363686906421
Merged-chr11-57801992-1	chr11	57801492	57802492	+	739.666687	f0_balb.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	355.0	NM_001081168	50724.0	Mm.340083	NM_001081168	ENSMUSG00000020519	Sap30l	2310079P12Rik|AF006998|L55	SAP30-like	protein-coding	4.25946370521538	4.23452839701745	4.52051932751466	4.44411626848336	3.8396895218711	4.15811423756582	-0.460895185448789	0.366785775432079	0.751897285098607
Merged-chr6-48537571-3	chr6	48537067	48538067	+	929.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347164)	promoter-TSS (NM_001347164)	-2.0	NM_001347164	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	4.70366080010759	4.98969841634133	4.840682475806	3.6612474431482	3.3638566591326	3.85777088113276	-4.12642074717212	1.16458554353169e-10	1.54796859275055e-08
Merged-chr1-74237909-4	chr1	74237414	74238414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1397.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	7.08665571505857	7.24099772863498	7.13979259489705	7.33916209510803	7.76460112837374	7.35204008150612	0.520676702308129	0.0410379048601751	0.252752182650292
Merged-chr6-30508785-2	chr6	30508285	30509285	+	724.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178625, exon 2 of 15)	exon (NM_178625, exon 2 of 15)	988.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	4.43559434524762	4.55071399494389	4.33849607948629	4.74688720991919	4.67483265794388	4.49890027263584	0.485288069234261	0.256632134136232	0.653682511929703
Merged-chr1-165691691-4	chr1	165691183	165692183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	16411.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.44845878502526	4.47413914697755	4.50820022490056	4.61656331664086	4.46005226629319	4.65483680693554	0.242707979866099	0.56516700289783	0.866558904441948
Merged-chr5-102060475-4	chr5	102059980	102060980	+	972.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	9441.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.3280994347537	6.30702536731031	6.20381466803339	6.820691579675	6.89264138546894	6.39037553295343	0.718156757332195	0.0119697861922396	0.114074214807453
Merged-chr11-82834629-3	chr11	82834124	82835124	+	880.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164570, intron 1 of 7)	B2_Mm1t|SINE|B2	-5581.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	4.12990720314011	3.8908038738714	3.99057954505233	4.30010673938821	3.97281824396741	4.33439944608764	0.559614547530497	0.263217508921263	0.661238149505653
Merged-chr17-31002180-2	chr17	31001680	31002680	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	47497.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	4.39376495252087	4.40740145863035	4.10566317148065	4.55309382601853	4.63309758309729	4.95654634989337	0.982903004925176	0.0321508025517444	0.217761821630081
Merged-chr13-20508710-2	chr13	20508201	20509201	+	836.0	f0_balb.idr|f1_balb.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35711.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.11244779698072	2.92558219492069	3.14587815348149	2.75721020079854	2.91540551028409	2.74112310254052	-1.23665348282148	0.0920895761772517	0.404230294078749
Merged-chr7-19871403-4	chr7	19870908	19871908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10109.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	7.19356257318803	7.07419618065387	6.66736689705812	7.21273945419002	7.06963343688432	6.54258007080443	-0.036102441754796	0.906203329578958	0.978603626740461
Merged-chr1-4857698-4	chr1	4857202	4858202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011541)	promoter-TSS (NM_011541)	8.0	NM_011541	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	6.91135964961663	7.01416363469709	6.93600706880956	6.9902072084765	6.885417849352	6.90934356971437	-0.0421485021255146	0.861376501533071	0.967801128028893
Merged-chr7-121059757-3	chr7	121059280	121060280	+	930.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	14750.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	3.73786446981434	3.54858741388804	3.43816288270064	3.5884860142939	3.32435532951251	3.82410595125485	0.00774061940478915	0.989786409814767	0.997611022725407
Merged-chr6-13605818-2	chr6	13605318	13606318	+	575.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028990, intron 1 of 4)	L2|LINE|L2	2280.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	6.08378012015272	6.35326653548509	6.38070581076543	5.99462697493052	6.41049406965226	6.28875061441198	-0.0465923418562372	0.876998851103769	0.971475057279973
Merged-chr13-37600979-1	chr13	37600479	37601479	+	565.5	f0_balb.idr	Intergenic	Intergenic	-225059.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.2827253964645	6.24022768799332	6.20508490862499	6.60197659814578	6.58700712854173	6.42567731549959	0.49084009166467	0.0668645623133549	0.33802340932818
Merged-chr10-68204625-3	chr10	68204117	68205117	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74109.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.30720561751486	6.32060757766366	6.42605879051234	4.61638204367023	4.38935363656432	4.68260525741128	-3.74620308089214	5.74029673852642e-22	5.4900989772334e-19
Merged-chr4-128680679-4	chr4	128680176	128681176	+	829.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	-8062.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.0338847999012	3.80924396198094	3.96155404455388	3.54094678033515	3.7400645219252	3.67664064009196	-0.906931072205105	0.0941273196421312	0.408647918855393
Merged-chr12-73340994-3	chr12	73340471	73341471	+	646.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 8 of 15)	intron (NM_001037717, intron 8 of 15)	54123.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	3.17337047633455	3.58340785179065	3.99338993146933	3.52087374989068	3.54405045403733	3.74297114419165	-0.0639686990859753	0.921851608168961	0.982542868764899
Merged-chr16-21635796-2	chr16	21635296	21636296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	Lx2|LINE|L1	58869.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.90273999440416	7.30200037743097	7.22742824652506	6.96180285671413	7.17387171767334	7.20341471657061	-0.0568013862912578	0.826456189443495	0.959132530412348
Merged-chr9-108690890-2	chr9	108690390	108691390	+	739.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1253.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	5.88895350617718	5.66397809942012	6.1195708728897	5.3341320690361	5.74951266333995	5.73074477698923	-0.497602450185752	0.149345802400254	0.515740424408397
Merged-chr12-111677556-2	chr12	111677056	111678056	+	917.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-549.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	7.38947599764227	7.57571398457806	7.79374524760177	7.67198597660527	8.27068372335774	7.73111231208544	0.483741925061385	0.0781854357051374	0.369227800775351
Merged-chr1-58761552-4	chr1	58761046	58762046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30994.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	5.29643299160151	4.78027314432763	5.43936390188793	4.72632449683667	4.36986897116313	4.85336959450038	-1.19195232503959	0.00743223973407791	0.0816093134150627
Merged-chr6-115334681-3	chr6	115334180	115335180	+	965.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-26271.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.09549444204639	3.56561336850155	3.65229182530271	3.33731201574114	3.67573296201018	3.49954082701294	-0.950002135435177	0.124241715716389	0.471601469447498
Merged-chr14-25486374-2	chr14	25485874	25486874	+	729.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	27189.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.34555252747936	3.97082001120335	4.46045699642861	4.15646797989444	4.06085326451318	3.93862252698097	-0.588523386187112	0.243735235641082	0.64086208327192
Merged-chr5-102057657-2	chr5	102057157	102058157	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12264.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.52823281003252	5.5780571392533	5.89827531928851	5.9487746162274	6.26381959606355	5.9359982343056	0.713762957743391	0.0268880336738202	0.195277952861241
Merged-chr10-77582636-2	chr10	77582136	77583136	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145925, intron 1 of 5)	intron (NM_145925, intron 1 of 5)	981.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	5.55144229063102	5.9366809972404	5.83790855325039	5.6577880783966	5.93541059999462	5.77426980641556	0.0270279102072035	0.933972851632174	0.98568056820022
Merged-chr6-29273790-2	chr6	29273290	29274290	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023516, intron 1 of 1)	B1_Mus1|SINE|Alu	1164.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	5.03738512816246	5.28394524769342	5.08545143333885	4.7135262125203	4.7339207125828	4.74429502409061	-0.909942521184081	0.0176774564388895	0.148816855055354
Merged-chr17-48342121-2	chr17	48341621	48342621	+	580.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	-4280.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	3.10739723178639	3.14847589210352	3.33989254802247	3.03527805502654	3.35533028246748	3.41005427865829	0.323951194284924	0.618339944844169	0.889291173440846
Merged-chr7-110164272-4	chr7	110163785	110164785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42226.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	8.11708529628747	8.44996712483085	7.67932684216607	7.94114771095378	8.40701301990924	7.63666918485203	-0.117982068407409	0.703492335657597	0.922108924938678
Merged-chr12-111712180-2	chr12	111711680	111712680	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_027404, intron 1 of 1)	PB1D10|SINE|Alu	773.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	4.69945828239849	4.85465427675652	4.83084541946184	4.71104185936359	4.43972903100991	4.85961688442128	-0.295931296518892	0.477550296890234	0.823237639056184
Merged-chr8-126594014-4	chr8	126593503	126594503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	-567.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.968192023756	7.95086352762787	7.57486263518381	7.77835297028805	7.92054868393135	7.65108060930361	-0.0831101759388198	0.729709982365902	0.930635866770147
Merged-chr6-71441820-2	chr6	71441320	71442320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1183.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	6.77080547601526	6.73546322303426	6.98919590411375	6.89278463605968	7.00659888743943	7.03409020867015	0.230738911191644	0.35605235631686	0.742926036020194
Merged-chr14-19776289-2	chr14	19775789	19776789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25032.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.41634862733864	5.7446794475537	5.29743980820825	5.37876296512343	5.15117073761726	4.88001263888015	-0.68705516961845	0.0732076051320354	0.355560261955779
Merged-chr17-27005838-4	chr17	27005338	27006338	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12197.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	6.09955017213913	6.04690088885644	6.08938702273186	6.03705818832713	6.04983488846775	5.86781507883214	-0.143639274164789	0.619302183713577	0.889749463061948
Merged-chr16-5255229-3	chr16	5254739	5255739	+	703.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	717.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	7.16173615541958	7.49353524602813	7.01915191401001	7.09185058494123	7.34844254702079	6.88778609478684	-0.171716926574104	0.535881865516317	0.853668337370661
Merged-chr15-43382618-4	chr15	43382118	43383118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94418.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	3.10680928152948	2.9148939907953	3.11535488589417	2.9142755851825	2.85761548565979	2.82699866966872	-0.859401479297766	0.21698430697172	0.610641262708521
Merged-chr19-3562899-4	chr19	3562390	3563390	+	925.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360430, intron 1 of 22)	L1M5|LINE|L1	12859.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	4.78145575938839	4.89736743859857	5.41730976651702	4.73513890900415	4.77059246038321	4.93808792918156	-0.517093349197329	0.2203225687823	0.614713486344018
Merged-chr8-25038672-4	chr8	25038266	25039266	+	754.512512	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031257)	TTS (NM_031257)	196.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	3.02316891462047	2.72728734922794	3.08514013773147	3.12695403565187	2.74292659242273	2.79204216441447	-0.248771396721547	0.73935195472199	0.934213727972483
Merged-chr7-138909604-4	chr7	138909098	138910098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009760)	promoter-TSS (NM_009760)	-92.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	5.63616271650656	5.67357389582636	5.46547867509629	5.52437343108013	5.31897419229088	5.12991502051079	-0.497867173201101	0.149173966943866	0.51537803021029
Merged-chr9-21132200-2	chr9	21131700	21132700	+	753.299988	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-925.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	4.0582864274355	3.80966488702642	4.46123649997307	4.11993373450818	3.98839197792732	4.1562542582666	-0.114491380479032	0.827253506627265	0.959401967627617
Merged-chr16-94600047-2	chr16	94599547	94600547	+	858.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11372.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.41341121924365	5.31301756486008	5.61958610228814	5.48071308799232	5.46145811989831	5.36876895797023	-0.00659823557006869	0.984391688451027	0.996597633599236
Merged-chr2-163987656-4	chr2	163987173	163988173	+	943.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MCb|LINE|L1	-7524.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	5.74151846466401	5.83599698746405	5.56113068100388	5.66459231866229	5.35681141870527	5.7060500011213	-0.280391742307569	0.399859022563747	0.776248940201881
Merged-chr10-127121234-4	chr10	127120712	127121712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171026)	promoter-TSS (NM_001171026)	-52.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	4.85313638864062	4.56187200183969	4.84921942902259	4.88686290495739	4.94638223605298	4.8399498989717	0.313577237710195	0.429770952404752	0.795863007201232
Merged-chr12-13270034-2	chr12	13269533	13270533	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027706, intron 1 of 51)	intron (NM_027706, intron 1 of 51)	906.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	4.57332050358949	4.5537304440994	4.70935474350861	5.7304775627342	5.70014991254473	5.20334303716371	2.04983567366652	1.38877343130687e-07	9.55017022084149e-06
Merged-chr15-54919366-4	chr15	54918867	54919867	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285994, intron 2 of 25)	intron (NM_001285994, intron 2 of 25)	779.0	NM_015744	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	3.26882374608197	2.95473484985461	2.99342819288813	3.28462383653153	3.26774982853131	3.24934629406922	0.776713791420685	0.24151123299666	0.638545539550255
Merged-chr4-4792742-3	chr4	4792249	4793249	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177730, exon 1 of 5)	exon (NM_177730, exon 1 of 5)	557.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	6.94993605588584	7.07941006665987	6.76424336915922	7.10510303235101	6.62454163944766	6.70973418159755	-0.17354252146403	0.534854697024754	0.853197870578179
Merged-chr2-3622424-4	chr2	3621910	3622910	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-91048.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.38496998937123	4.53788048016255	4.79182604855769	4.49947759479289	4.5939166448984	4.85607279676175	0.188880282417943	0.665115594012392	0.907746805514405
Merged-chr2-31135775-4	chr2	31135282	31136282	+	963.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	6226.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.58101798609159	5.21880348718394	5.15717991811936	5.370215321078	5.40297150112101	5.03914435838037	-0.0975700680067807	0.795094072982508	0.950988343345385
Merged-chr11-69074107-2	chr11	69073607	69074607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028566)	TTS (NR_028566)	681.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	5.78010566836499	5.44409386742667	5.90544565626479	5.45826720374679	5.63845472839955	5.87526842079267	-0.0996821930801911	0.772647789491911	0.943848608021176
Merged-chr11-101978796-2	chr11	101978296	101979296	+	553.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5995.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	4.6977630418283	4.49016864236151	4.7376808433582	5.10851383044741	4.74433101771332	4.80393918656324	0.582732254357205	0.158142110697835	0.529823190004248
Merged-chr3-27693349-2	chr3	27692849	27693849	+	541.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	17103.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	2.61241622229532	2.40935452689776	2.40472388640776	2.7132253934024	2.4893360041925	2.67634913980443	0.844315150915357	0.296339290733305	1
Merged-chr6-32996766-2	chr6	32996266	32997266	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63494.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	4.5049922548538	4.62781052400786	4.74312207866779	4.36276042394325	4.6111127244222	4.6960966190869	-0.148581505367448	0.728073268554357	0.930391495870939
Merged-chr10-60263449-2	chr10	60262949	60263949	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14179.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	4.32914122190959	4.38506748697719	4.24161336005773	4.22114370905756	4.006311266013	4.35366888402687	-0.363139883938629	0.438521545208251	0.800615097962194
Merged-chr4-138075385-1	chr4	138074885	138075885	+	541.0	f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	MTB_Mm|LTR|ERVL-MaLR	63133.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	3.28570618624216	3.17370260825864	3.33576732263649	3.16986650465555	3.10871642735824	3.29678732166353	-0.314369935543216	0.616141860233329	0.888272754285876
Merged-chr2-84426640-4	chr2	84426052	84427052	+	957.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1286.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	6.69210255911854	6.9758341746532	6.48501391816803	6.63284814584421	7.0470654121249	6.79982253364586	0.156689203272978	0.587493661090885	0.875950553730721
Merged-chr7-25282065-4	chr7	25281578	25282578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-101.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	6.86699478733852	6.66161518252624	6.96680628656343	7.04341560065597	6.71662855950744	6.8124075247802	0.048703737127914	0.854496167188684	0.965987623019113
Merged-chr8-13596713-2	chr8	13596213	13597213	+	628.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-34252.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	5.11115613867702	5.03382434395261	5.29433315202668	5.10348740575767	4.81840358979854	5.46882004617057	-0.00315719253713988	0.993704726140699	0.998777772262979
Merged-chr16-24627178-2	chr16	24626678	24627678	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-94677.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.30150646266784	6.01574163831428	5.95958816293413	6.21663021654957	6.34678319610781	6.02074755175298	0.17549040501419	0.561855788862021	0.865580593452079
Merged-chr10-68204064-3	chr10	68203575	68204575	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74651.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.3521096413279	6.29376746479238	6.2027268874069	4.58002381965545	4.08732984546777	4.42009709374496	-4.31150577002424	3.48316498340871e-22	3.45032371356514e-19
Merged-chr18-36563156-2	chr18	36562656	36563656	+	586.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175375, intron 1 of 33)	B3|SINE|B2	2553.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	4.04184392991438	3.83690276768496	3.82389664671169	3.93277445363116	3.78937593968422	3.78890616976829	-0.218251465941331	0.67397254042688	0.911765894490851
Merged-chr19-8711020-2	chr19	8710520	8711520	+	714.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 4 of 9)	intron (NM_001161413, intron 4 of 9)	2877.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	3.259056988674	3.67290731862524	3.61667717986242	3.67071415571513	3.58501714346664	3.73784683448933	0.468609336189675	0.427012809925513	0.7939695894886
Merged-chr17-51177658-3	chr17	51177171	51178171	+	858.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1681.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.55148538592268	6.47752534655044	6.48555493947492	6.68669388386767	6.67188915409889	6.6645897408419	0.26873763991994	0.291302717829962	0.689020066615668
Merged-chr7-16615339-4	chr7	16614828	16615828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172739)	promoter-TSS (NM_172739)	-335.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	6.8406355552482	7.14238129009636	7.17921415497339	6.85878834085945	6.7749215687478	6.97420507346459	-0.295725556339117	0.250474784989614	0.647815053755309
Merged-chr6-94507298-4	chr6	94506793	94507793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6979.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	5.31013699683434	5.14790020545877	5.17639154237075	4.45475417803504	4.54324589641804	4.61693626476676	-1.53077486616473	0.000103420662523071	0.00291511737371939
Merged-chr2-155236509-4	chr2	155235992	155236992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291108)	promoter-TSS (NM_001291108)	-41.0	NR_111891	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	7.37564991362931	7.77607181555928	7.47360376703046	7.02494290426205	6.91626888216985	6.71751585830025	-0.984387809235838	0.000152072115547822	0.00402212860473718
Merged-chr8-104345213-2	chr8	104344713	104345713	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024217, intron 3 of 4)	intron (NM_024217, intron 3 of 4)	4619.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	3.43559699481038	3.20326586201547	3.59330648887739	3.21757104864577	3.02216703795399	3.66229401823845	-0.356987317180335	0.599656408347409	0.881122597050421
Merged-chr9-107261068-4	chr9	107260551	107261551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 4 of 7)	intron (NM_001316691, intron 4 of 7)	28345.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	5.06426383779253	5.35608566194092	5.11429550625064	4.44471637989638	4.41864139479669	5.14644110026641	-1.06583225890898	0.0182926114204784	0.152560049220724
Merged-chr13-56612694-2	chr13	56612239	56613239	+	769.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	3153.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	6.87591837156059	7.05689015675024	7.10124928065116	7.14522126324149	7.52464995197462	7.14644013248008	0.424263497130525	0.101088584460989	0.424046125016633
Merged-chr8-128693257-2	chr8	128692757	128693757	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	RMER4B|LTR|ERVK	7603.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.55739852943049	4.50632692307294	4.75590661319295	4.56613893798207	4.5966494836301	5.39687629276488	0.675050055984712	0.156493397800272	0.527122318915315
Merged-chr7-128461819-4	chr7	128461316	128462316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009383)	promoter-TSS (NM_009383)	-143.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	7.76804230336733	7.90717723315685	7.59758861636599	7.69836676999412	7.69598293009735	7.5351763623301	-0.173949906432733	0.447105674407649	0.806270036091875
Merged-chr7-92637132-4	chr7	92636654	92637654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-12.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	7.73781076783265	8.12397222993361	7.63912996252287	7.59550307783947	8.11733385565479	7.75081249338791	-0.0145859982040899	0.95696272358515	0.989887454023164
Merged-chr16-44119273-2	chr16	44118773	44119773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19986.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	7.4914113102554	7.61239191696319	7.48866804478641	7.21085135076251	7.64837833983612	7.1313268698186	-0.249054797708112	0.338941066454109	0.728919083443527
Merged-chr19-9023366-4	chr19	9022860	9023860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039959, intron 4 of 5)	intron (NM_001039959, intron 4 of 5)	34076.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	4.645768234562	5.02460419616009	4.85632874021492	4.55219751024691	4.08535995395347	4.44522146891968	-1.18206615750231	0.00962278295576808	0.0978961394037842
Merged-chr16-57543558-3	chr16	57543016	57544016	+	676.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-5726.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.21012499596399	3.18175281804703	3.5603956319328	3.01257204652665	3.29340521029316	2.95931497316114	-0.908090118469744	0.195936328092238	0.583684304306851
Merged-chr2-144294463-3	chr2	144293951	144294951	+	922.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23547.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	3.91445419061518	3.73868130112446	4.15923341399577	4.10081523780727	4.19322130735358	4.31238091442691	0.768555823238016	0.126583143346592	0.475549804679232
Merged-chr5-134607322-4	chr5	134606814	134607814	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 3 of 12)	intron (NM_020044, intron 3 of 12)	7711.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	3.55957058093376	3.67479686649701	3.62498459336499	3.44138918773611	3.48558701682888	3.42161209569224	-0.61279390080796	0.28176251533293	0.679877490309199
Merged-chr11-87441973-2	chr11	87441473	87442473	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	14382.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.69105831021254	3.54580331743195	3.95886395733778	3.4446488451233	3.82678916459046	3.8887508456216	-0.0072221639798426	0.990095007042954	0.997703818943275
Merged-chr3-146158204-4	chr3	146157704	146158704	+	993.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	8030.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	6.20530161877774	6.2641134433379	6.07963548835983	6.19778163700216	6.4935160340661	6.29008032060536	0.248001590644488	0.384561592194905	0.76571827426724
Merged-chr7-118485089-4	chr7	118484539	118485539	+	935.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033380)	TTS (NM_001033380)	6936.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.1586006655399	7.11200132546698	7.15609917564954	7.08868523023111	7.22743772989512	7.20159415606787	0.0499784116808404	0.830215687306073	0.960219727001139
Merged-chr2-73512209-4	chr2	73511686	73512686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	17301.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	6.97457681094582	7.03851056611068	7.17179538332199	7.40271355288245	7.38017114101413	7.24132973168044	0.431752414092622	0.0669410949898796	0.338143673984297
Merged-chr13-54621748-4	chr13	54621268	54622268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178397)	promoter-TSS (NM_178397)	-16.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	7.83208499657531	8.19560572056621	7.68987231127289	7.94885926311431	8.02772899424214	7.6711588725207	-0.0491449053651375	0.847103587923726	0.96415075979756
Merged-chr1-66838509-3	chr1	66837960	66838960	+	702.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 8 of 10)	intron (NM_007381, intron 8 of 10)	-20865.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	4.4002560959229	4.9781923911989	4.65806071683184	4.98853094659435	5.01364089124818	4.5511343187628	0.381561676548326	0.399752394906574	0.776144569668866
Merged-chr7-45103168-3	chr7	45102505	45103505	+	817.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010189, exon 2 of 7)	exon (NM_010189, exon 2 of 7)	817.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	5.48325742294998	5.6034806965627	5.82250855776075	5.54428950149008	5.81706253332325	5.6571522108185	0.0920255111432106	0.779939260210506	0.945949149660645
Merged-chr4-59594756-4	chr4	59594206	59595206	+	950.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 5 of 11)	MTC|LTR|ERVL-MaLR	13143.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	4.84416047086171	4.60647666670891	4.82957903879309	5.39908905476941	5.51588631303802	5.56940227155478	1.53633550035809	2.98895633387594e-05	0.00102432075217936
Merged-chr10-17550867-4	chr10	17550368	17551368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-172360.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.21661968559874	5.29186716805336	5.14145783658989	4.96428647875363	5.08513027362268	5.172345744393	-0.309632173042361	0.387934921736494	0.767896302403897
Merged-chr13-45388382-4	chr13	45387933	45388933	+	797.892822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1309.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.40218319651859	3.59692719091136	3.5146972261457	3.19887167518242	3.08331228305135	3.5328259045948	-0.907527380289164	0.154098262498906	0.523241150332653
Merged-chr14-30616944-4	chr14	30616445	30617445	+	774.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-6635.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.38251354710964	4.32158719731068	4.74813420140369	4.69312579789738	4.61736222823985	5.16809174022169	0.830982633119544	0.0682310476789413	0.341701415303602
Merged-chr12-65076397-2	chr12	65075897	65076897	+	601.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178912, intron 1 of 22)	intron (NM_178912, intron 1 of 22)	791.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	4.18562441890035	4.03946574164547	4.44833750418169	4.1807261219522	4.08345259787309	4.22102363084522	-0.183887238914844	0.702113742900444	0.921757269771603
Merged-chr8-46791350-3	chr8	46790839	46791839	+	650.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	51594.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	6.02490093600385	5.87933999643871	6.14347500042555	6.11520516701239	6.33518060344941	6.41507088924082	0.473331888309582	0.105634320268512	0.433764288115161
Merged-chr12-69357135-4	chr12	69356637	69357637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025441)	promoter-TSS (NM_025441)	39.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	6.65334747635676	6.85348974875433	6.44050262974761	6.70382426020798	6.79972855576795	6.51922975682315	0.0268645778267416	0.922534037076159	0.982621045978137
Merged-chr2-27693309-3	chr2	27692801	27693801	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15991.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.4376496018851	6.59739814950365	6.73691716246766	6.07862656777116	6.49193753207129	6.41681794452249	-0.398313419973674	0.169346617492541	0.546111904953782
Merged-chr12-81595106-4	chr12	81594608	81595608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347386)	promoter-TSS (NM_001347386)	-100.0	NM_001347384	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	6.16602195992696	6.49178475704024	6.15089903040799	6.45821791937788	6.51460872259296	6.41540797516868	0.291451634782382	0.303951377933694	0.700431656561062
Merged-chr2-167388584-4	chr2	167388097	167389097	+	911.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33113.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	3.8574605960836	3.55506517280273	3.78987729042323	4.24468061149968	3.73826123028744	3.75406010548362	0.6170507258896	0.275672367900374	0.673222482990106
Merged-chr14-30619284-2	chr14	30618784	30619784	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	6924.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.63287627575153	5.51423282003556	5.58155889573152	5.71351429137363	5.56519380571995	5.43867497727134	0.0104251624215092	0.974372951074177	0.994276686350905
Merged-chr5-121597530-4	chr5	121597035	121598035	+	933.7958369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178799)	TTS (NM_178799)	-3711.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	7.076619115776	7.30653792190726	7.12333541913629	7.23616664943128	7.40921033245186	7.27776962685414	0.205125537678433	0.391162648822998	0.770206739374576
Merged-chr1-170853775-4	chr1	170853278	170854278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081304, intron 2 of 15)	intron (NM_001081304, intron 2 of 15)	13993.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	7.07283189137789	6.94917473118963	7.03807645540009	6.54627229794226	7.24990551518908	7.15815090138196	0.00741601697457597	0.979760928964497	0.995332945386782
Merged-chr3-89796527-4	chr3	89795997	89796997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	22888.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	7.62152326723746	7.86298212774024	7.42960604968635	7.45488985711615	7.92473046848089	7.42082298217536	-0.0362617050991994	0.893439596525406	0.975237866709772
Merged-chr2-133020624-4	chr2	133020117	133021117	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74581.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	3.5516038329437	3.4604678317445	3.51080897339801	3.62252445209609	3.20304374582478	3.78460793882231	0.159558889892013	0.796523050009333	0.951430675491237
Merged-chr12-16589787-4	chr12	16589295	16590295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172950)	promoter-TSS (NM_172950)	-25.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	6.65954281685478	7.12134592371909	6.59537746959064	6.00271899146415	5.69876100849224	5.61681002529176	-1.7155959618542	8.80738544280638e-08	6.37811077393414e-06
Merged-chr2-18055776-2	chr2	18055276	18056276	+	687.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_149308)	promoter-TSS (NR_149308)	48.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	3.87886266631738	3.75833566202152	4.04444194741397	4.03564003756192	3.91085010153323	4.20103076559135	0.468908187086493	0.357688671270128	0.744246280500086
Merged-chr4-102760228-4	chr4	102759733	102760733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	98.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.30982345982775	4.19750151846593	3.87085737806527	3.53563463291753	3.43460888342607	3.42090021408123	-2.33216256620678	7.46725199801766e-05	0.0022150984108772
Merged-chr8-104631419-4	chr8	104630869	104631869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-48.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	4.54489798395591	4.43597057672216	4.48449398973474	4.65949815617221	4.57804473606927	4.63430715320358	0.326201073567103	0.432602002735404	0.797386699146392
Merged-chr14-21843480-3	chr14	21842961	21843961	+	876.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011695, intron 8 of 9)	intron (NM_011695, intron 8 of 9)	-4117.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	3.46319980103013	3.70324440979343	3.99496574185716	3.52784491295209	3.38870363584389	3.53015341187361	-0.878999546413594	0.138553548357348	0.497422602222815
Merged-chr19-56397271-4	chr19	56396738	56397738	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007611, exon 1 of 7)	5' UTR (NM_007611, exon 1 of 7)	109.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	6.51855100195828	6.94996194408068	6.67519637569717	6.75917409244878	6.82838940369914	6.36836734654299	-0.0826401100753852	0.777342141540852	0.945092074067485
Merged-chr14-45155865-4	chr14	45155365	45156365	+	842.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310534, intron 14 of 20)	MT2A|LTR|ERVL	63560.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	2.98822492723848	3.04793074755379	3.03037634152214	2.79608857953997	2.90634756987858	3.15847879029222	-0.306421268067616	0.658174297557976	0.904942849604168
Merged-chr13-36117524-4	chr13	36117030	36118030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	-113.0	NM_024274	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	6.64933553572197	6.97854742894523	6.66126876902076	6.90102496318058	6.61374345593397	6.32714147624859	-0.210950694041455	0.474064744339927	0.821247104271739
Merged-chr11-69118079-4	chr11	69117639	69118639	+	950.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2314.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	6.17603379013036	6.21728675723386	6.28625456578774	6.06937668497092	6.51541357410728	6.22528027199377	0.116248488317966	0.693847522651147	0.919065250351864
Merged-chr7-143007522-3	chr7	143007033	143008033	+	891.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	1874.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	3.76018619755279	4.03507674000383	4.24570599512149	4.7483114750297	4.7319857112025	4.93662523597319	2.0742946716458	1.58449952906455e-05	0.000596305005944837
Merged-chr1-156719857-1	chr1	156719357	156720357	+	549.0	f1_balb.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-947.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	2.86613800909538	2.90122686140414	3.01453356342073	2.85730203013857	2.48409396298332	2.85118286212283	-0.970068985439285	0.213213615195829	0.606044992772247
Merged-chr12-79015793-2	chr12	79015264	79016264	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8487.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	5.87690006306914	5.87236243008977	6.00939074280335	4.22810097851709	4.24466666815219	4.48691235346949	-3.65058642159823	2.20114565705941e-17	9.53921499128121e-15
Merged-chr11-61782974-2	chr11	61782474	61783474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013881, intron 23 of 26)	RLTR17|LTR|ERVK	-20886.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	2.7713191788567	2.96674609758627	2.94201231539911	2.75766645168844	2.71381792671128	3.12660319412846	-0.111974448176658	0.878761687445447	0.972000507462599
Merged-chr7-17056924-1	chr7	17056424	17057424	+	745.0	f1_c57bl6.idr	promoter-TSS (NM_016868)	promoter-TSS (NM_016868)	-245.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	4.96402870762149	5.42469345211892	4.90045453655196	4.8531905590971	5.22171931206865	4.84827429648719	-0.273888120191437	0.511961483647509	0.841619835183182
Merged-chr5-5551279-2	chr5	5550779	5551779	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153116, intron 4 of 9)	L1_Rod|LINE|L1	8262.0	NM_153116	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	3.15718120232854	3.23211308278303	3.58780331673981	3.46250174792365	3.16626621930057	3.50577488872589	0.193715518420011	0.763262358742192	0.941755506558843
Merged-chr11-20656083-4	chr11	20655582	20656582	+	949.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24105.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.99614048373385	2.9453578730092	3.20738428537005	2.89957517571686	2.77180710109722	3.16976789675697	-0.462635837295706	0.51314125677528	0.842378026960478
Merged-chr3-96559605-4	chr3	96559087	96560087	+	996.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009935, intron 4 of 7)	intron (NM_001009935, intron 4 of 7)	1630.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	5.92208926658568	5.55233705570538	5.8790118858957	6.1707691663008	6.36576471466762	5.94084780388091	0.679089628092029	0.0339502559622096	0.225417562887291
Merged-chr11-118457752-3	chr11	118457305	118458305	+	852.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-2810.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	8.33413603240003	8.37183126150871	8.02662930287724	8.07948949451289	8.32439757238848	7.98329148222517	-0.162142966402829	0.488305295834691	0.829104641846902
Merged-chr19-34583045-2	chr19	34582545	34583545	+	817.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-484.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	6.98940842876313	7.25304744323936	6.67456397280342	7.01850926336857	7.32080442468668	6.88014668183947	0.137718481279485	0.633305458497712	0.896008987803129
Merged-chr18-67205949-3	chr18	67205437	67206437	+	893.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024190, exon 1 of 1)	exon (NM_024190, exon 1 of 1)	578.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	7.3314106313508	7.72971956875536	7.33317096520942	7.27227888361627	7.37314656077879	6.78936795862242	-0.448229562744943	0.115032120808344	0.45279307007052
Merged-chr10-81177180-4	chr10	81176686	81177686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007907, intron 1 of 13)	intron (NM_007907, intron 1 of 13)	555.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	8.33491498604913	8.59888958701144	8.07691166893133	8.1109440463952	8.39324495528942	8.16101832772035	-0.181530704589421	0.454715135329122	0.810532225390276
Merged-chr6-13672899-4	chr6	13672417	13673417	+	879.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175312, intron 1 of 4)	B2_Mm2|SINE|B2	5049.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	3.31789642495666	3.20331318887655	3.0344689909445	3.35491126900276	3.2380144938859	3.71392735565543	0.979314586960526	0.140425971906085	0.500760820920022
Merged-chr2-181529289-3	chr2	181528800	181529800	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	8815.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	4.23893843693759	4.1114659224627	4.8042425653845	4.18416486576147	4.23219642255162	4.58933186403655	-0.177896978713709	0.727613791410412	0.930204882969987
Merged-chr8-4779630-4	chr8	4779128	4780128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011369)	promoter-TSS (NM_011369)	-61.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	4.36918758496329	4.66764296824159	4.45519301342712	4.79266425276249	4.80351646599428	4.3849901542142	0.425372931939007	0.338554196493654	0.728543936569625
Merged-chr7-30195103-4	chr7	30194568	30195568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009795)	promoter-TSS (NM_009795)	85.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	7.1123362029464	7.59075881226988	7.51500522331277	7.52514890617011	7.67192648467987	7.29307443799651	0.133370618576565	0.61365311572246	0.887300906025089
Merged-chr4-133204615-3	chr4	133204077	133205077	+	912.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7959.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	5.32307267214761	4.89477842826428	4.73064718161725	4.74854050887745	4.18659666662301	4.63198361497446	-1.09232917147092	0.0189048563036598	0.155575888208877
Merged-chr2-36238478-4	chr2	36237970	36238970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 5 of 10)	MamGypLTR3a|LTR|Gypsy	8044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.97467874829195	5.76191302931389	6.0635419554926	5.80592997250204	6.10121275183506	5.59540519982333	-0.117360462953878	0.722294944893881	0.92872455507539
Merged-chr14-77823034-3	chr14	77822536	77823536	+	954.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24068.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	3.26641765947686	3.27016866136736	3.38537100712521	3.4288088627609	3.58884186921167	3.22301167485072	0.48839299598344	0.428647558503863	0.795420465213011
Merged-chr4-136470730-3	chr4	136470233	136471233	+	888.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	CpG	972.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	5.97206025086175	5.98954250172178	6.14421029411483	5.92296346245491	5.67517324866285	6.12229256141595	-0.220776869985196	0.478887117660009	0.823902888227897
Merged-chr2-24976685-3	chr2	24976192	24977192	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 1 of 34)	B1_Mus2|SINE|Alu	659.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	8.22231683626547	8.44896520660599	7.70597302045316	8.24054203988655	8.48622693233712	7.7904913574456	0.0583917310341915	0.844379331838669	0.96373428957366
Merged-chr2-84524897-2	chr2	84524397	84525397	+	581.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-18024.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	5.4307112846507	5.06639443606208	4.9258129793234	5.08473213499344	5.22572890898233	5.13834363011747	-0.0326696390670631	0.931946200141509	0.985003422266782
Merged-chr10-95256344-4	chr10	95255862	95256862	+	713.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	67347.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	4.19038640610635	4.18776344577857	3.98491742308033	4.2825480333775	4.29377620535222	4.05572972207094	0.25211300749778	0.598961623554055	0.880902871165758
Merged-chr8-117526343-4	chr8	117525850	117526850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	28075.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	4.59709597435957	4.79396738712702	4.5634133425326	4.52149942641724	4.26971610821039	4.54718406761924	-0.537628262800279	0.214507875512206	0.607617746574286
Merged-chr5-148536360-3	chr5	148535856	148536856	+	767.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	15317.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.34268665720254	5.34450836194523	4.97726503522949	5.53802860044671	5.49545145214969	5.56932419227131	0.555743688513424	0.114155298405991	0.451234828318327
Merged-chr14-63144336-4	chr14	63143851	63144851	+	876.1166380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010191)	TTS (NM_010191)	21889.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.02873273547243	4.90885735976371	4.94355809737205	4.83564841088013	4.66913094154862	4.78498330835821	-0.452500775324184	0.240795288392406	0.637807804054095
Merged-chr6-53986398-3	chr6	53985825	53986825	+	940.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	7634.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	3.41107773983044	3.4694245123056	3.41781707204584	4.19542352899294	4.44357830961176	4.59769676055764	3.29301787539568	6.31601748205265e-08	4.71762282447609e-06
Merged-chr7-80778573-4	chr7	80778030	80779030	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	24801.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.5136976781511	6.20877868097422	6.52044158408049	6.7808330011473	6.52234649428764	6.72619332293957	0.415799290382745	0.134605485215015	0.490439383589701
Merged-chr5-114661222-4	chr5	114660708	114661708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-2787.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	6.88342368786966	6.81299902756638	6.965826357636	6.66761501156447	6.77036946447441	6.7511744879194	-0.239460653817598	0.334824503698978	0.725198429760335
Merged-chr3-146584221-4	chr3	146583783	146584783	+	939.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-12866.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	5.54198610179817	5.69481912375214	5.20914100754428	4.82403555618938	4.62982537629592	4.65124355675823	-1.7018147295788	1.24749995136694e-05	0.000484151007245059
Merged-chr11-95426685-3	chr11	95426185	95427185	+	710.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359107, intron 1 of 9)	B4A|SINE|B4	12602.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	4.1253162560786	4.14179438306543	4.54046117987798	4.44465935251666	4.19871839105177	4.52859492322556	0.313106040907712	0.511737883639832	0.841519675193282
Merged-chr8-88288219-2	chr8	88287719	88288719	+	660.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-847.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.37488648080384	5.19938591001726	5.10478842541165	5.43192571714233	5.18968152592735	4.90397052715551	-0.071210392048639	0.851383369329474	0.965215411919547
Merged-chr19-5954068-2	chr19	5953568	5954568	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 5 of 17)	intron (NM_001164057, intron 5 of 17)	10138.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	4.40560418907692	3.73928086113035	4.15344771732963	4.13809690149502	3.81301994467979	4.51128300643917	0.138233233584917	0.80895392700775	0.954721853010197
Merged-chr13-49682082-4	chr13	49681561	49682561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172015)	promoter-TSS (NM_172015)	-69.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	5.24043055507013	5.64851390378769	5.43181547380989	5.54754987017574	5.64556130992433	5.52461104652587	0.232314471573371	0.496783711454376	0.833336003728501
Merged-chr5-123720553-3	chr5	123720051	123721051	+	899.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 1 of 13)	CpG	493.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	6.37903809173633	6.40624374888444	6.58658577584635	6.87911900597512	6.79802853156458	6.44863241892459	0.440849758210718	0.111169972980218	0.445419833321467
Merged-chr6-122577209-3	chr6	122576760	122577760	+	900.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_031159)	TTS (NM_031159)	23451.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	4.30492737232071	4.24053308983271	4.49364888826299	4.35188680607655	4.08102260280631	4.43867032483794	-0.144875986932022	0.756122598841225	0.939527320894303
Merged-chr10-94966927-4	chr10	94966422	94967422	+	881.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22344.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	3.93602816919507	3.62108387095645	3.55084011939142	3.67596537240451	3.37330659818196	3.73023840806488	-0.419665491951362	0.476061830484416	0.822323655123358
Merged-chr5-107437907-4	chr5	107437443	107438443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255991)	promoter-TSS (NM_001255991)	-54.0	NM_001255991	100503185.0	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115	BTB (POZ) domain containing 8	protein-coding	5.10859832124373	5.22518032545584	5.42782836332325	5.27792763993233	5.01442041836748	5.31572905732498	-0.105505283709753	0.773065277812756	0.943975121767824
Merged-chr4-58913766-4	chr4	58913236	58914236	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-987.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	3.45474456058147	3.50092843323728	3.6322591421434	3.67080253768768	3.40123320300185	3.59803696400923	0.108152344182257	0.850613781961999	0.964981271430729
Merged-chr2-32847329-4	chr2	32846823	32847823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009295)	promoter-TSS (NM_009295)	-86.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	7.09280924480709	7.19385238652089	6.8770627294518	6.99273782037066	7.01326781299241	6.66130788817743	-0.243583978482429	0.35518908823886	0.742166984435213
Merged-chr3-27289029-4	chr3	27288568	27289568	+	907.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28009.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	6.19366125881018	6.50037453153378	6.18263788811411	6.5609422663752	6.66499101104004	6.53650331724009	0.458754837504594	0.0999151399148705	0.42156781917938
Merged-chr9-121320670-4	chr9	121320165	121321165	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	23163.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.27627001762871	5.21475699780786	5.41520647615065	5.08972931597996	4.89986299678906	5.03595314876894	-0.608652073207483	0.0919954726942184	0.404030364823209
Merged-chr10-21850478-3	chr10	21849979	21850979	+	775.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31705.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.36467033597976	3.32400517357351	3.43755106426643	3.07554161819084	2.90858937733949	3.23594429310823	-1.31900794594419	0.045888747727623	0.270725391443566
Merged-chr1-88697515-1	chr1	88697015	88698015	+	565.0	f0_balb.idr	TTS (NM_177305)	TTS (NM_177305)	4676.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.42447948759812	4.07928566175809	4.30793915634046	4.23146592236363	3.9213825718328	4.37498015557835	-0.26912302844809	0.587531550495938	0.875975653634109
Merged-chr11-120236952-2	chr11	120236452	120237452	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347621, exon 2 of 28)	5' UTR (NM_001347621, exon 2 of 28)	4005.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	4.2740701816436	4.17009923275408	4.56876328837998	5.23887763055612	5.03353267061191	4.87491790496744	1.72800974119172	5.62201520360822e-05	0.00173966768710239
Merged-chr19-55236235-4	chr19	55235724	55236724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5012.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	4.63544140169521	4.47333940508774	4.46759508323254	4.38259929393702	4.61876194551555	4.20879253434631	-0.254069333873845	0.575041649475665	0.87094931637326
Merged-chr8-25012611-1	chr8	25012111	25013111	+	555.0	f0_balb.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	4311.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	6.52901003956677	6.46248028564959	6.67380889993494	7.14695332297819	7.10752380565956	7.16139737275861	0.909644842710621	0.000228521089111106	0.00557945504188877
Merged-chr14-31019112-4	chr14	31018614	31019614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	17.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	8.29854845599733	8.4483051294445	7.8738033605004	8.31269331530737	8.39771124411332	7.86105030900148	-0.0252096689988045	0.925317913536416	0.983166193538686
Merged-chr1-56972366-4	chr1	56971878	56972878	+	881.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	909.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	3.43338838304507	3.16531726799797	3.7871768483294	3.44507792713528	3.2468629278975	3.51413331696236	-0.28546097954244	0.657506267814162	0.904798742244684
Merged-chr13-20120854-4	chr13	20120418	20121418	+	906.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	30411.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.95370508522069	4.93263384798985	5.00197940653083	5.1405680313862	5.03113517083497	5.43735277472392	0.507875804908971	0.176667675957035	0.557127430636861
Merged-chr5-35747030-4	chr5	35746535	35747535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7048.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	4.56473739521674	4.43668927947834	4.44563602033032	4.29877780209893	4.32659991028987	4.51236161558109	-0.281160958124326	0.519541597740362	0.845839622469233
Merged-chr6-116136368-4	chr6	116135858	116136858	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57016.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	6.62518093803701	6.66489406164491	6.33654570721007	6.71969520819719	6.73088399169835	6.53162989029836	0.173024780396186	0.522743396440827	0.847733418668009
Merged-chr11-31718308-3	chr11	31717820	31718820	+	998.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46458.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	3.56062288247142	3.18440339065977	3.14793880963264	3.10872094227217	2.95782789789602	3.27967953097703	-0.840316735747021	0.215216916545676	0.608569604836969
Merged-chr17-50331607-1	chr17	50331107	50332107	+	665.0	f1_c57bl6.idr	Intergenic	Intergenic	-37987.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	3.66345039479019	3.49169048863694	3.6340374461848	3.80662437942837	3.5632010799383	3.95075157195062	0.600220468187372	0.284842343295077	0.682457480121006
Merged-chr1-128103195-4	chr1	128102703	128103703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	-103.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	7.47514033398899	7.71326793770923	7.25706337951303	7.54379808030941	7.7921189082855	7.50469195399178	0.177374793904482	0.482233284681438	0.825427202167635
Merged-chr11-4123395-4	chr11	4122904	4123904	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-4675.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	4.99299687504136	5.11773822037215	5.27894496631338	5.06250160057475	4.85405261965149	5.05447182738022	-0.299332327625318	0.424268076417991	0.792602112765787
Merged-chr2-130631310-4	chr2	130630643	130631643	+	819.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1105.0	NM_001255994	140629.0	Mm.486003	NM_080562	ENSMUSG00000027300	Ubox5	1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5	U box domain containing 5	protein-coding	3.32492804383213	3.16417527734229	3.10209943985431	2.91621810790963	2.89365958621679	3.05541254952909	-1.1605345090424	0.0865506545575666	0.389700624972171
Merged-chr14-25460298-4	chr14	25459807	25460807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	CpG	1122.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.73094860102092	8.02894143709629	7.96218789066932	7.72485661693382	7.75367402290664	7.41454025597004	-0.381663834058519	0.111021271964574	0.445047839168872
Merged-chr2-52900537-2	chr2	52900037	52901037	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	42669.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.15416894782536	4.26547826648264	4.47885505390509	4.10993763097076	4.17858509499043	4.58222832292079	-0.00699531891322582	0.988448815954949	0.997390908272651
Merged-chr1-170936472-3	chr1	170935962	170936962	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8879.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	4.86398784807154	4.83825246922517	4.70988214034739	4.9325689712949	4.61320823755562	4.73631355965303	-0.106612048939918	0.791226077231434	0.949694766870106
Merged-chr11-89060102-1	chr11	89059602	89060602	+	797.0	f1_c57bl6.idr	promoter-TSS (NR_110336)	promoter-TSS (NR_110336)	646.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	3.77887567102701	3.90711803945333	3.95272603627408	4.15776247174093	4.14687005568913	3.92139583453473	0.63033904131915	0.20888800581248	0.59999240292426
Merged-chr11-8706110-4	chr11	8705612	8706612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-41577.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.4574073514645	5.4461321245845	5.10711089418692	5.51350877623914	5.40401151381529	5.46831010394776	0.19596841633711	0.571909969580267	0.869765590423389
Merged-chr7-45709385-5	chr7	45708951	45709951	+	811.210022	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_203280)	TTS (NM_203280)	4204.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	3.86663516951902	3.77073358443991	3.87835218642528	3.86947028664181	3.72980485997405	4.13160156606622	0.227906282518494	0.665083652196448	0.907732432508614
Merged-chr9-66512558-4	chr9	66512079	66513079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	2014.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	8.37546612531792	8.73553996114053	7.88782329206907	8.16247784632964	8.65987469468958	7.80144598018159	-0.167506736389405	0.602316805077554	0.882303107092216
Merged-chr6-72395082-4	chr6	72394585	72395585	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4418.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	6.75975950837964	6.68666607246135	7.12234897051822	6.96219250804841	7.4068393455834	7.23860010020346	0.544435468734376	0.0490885083451457	0.281538227349247
Merged-chr1-88573741-4	chr1	88573250	88574250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	22233.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	4.46805174595758	4.59036744136272	4.46462777885861	4.53531359561028	4.56062817980395	4.53184967714308	0.0777404043522281	0.853116050302598	0.965597129346461
Merged-chr1-128748351-1	chr1	128747851	128748851	+	592.0	f1_balb.idr	Intergenic	Intergenic	-156052.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.23814576714182	3.38958924105472	3.27451365685195	2.70552586929507	2.68878714256907	2.80246020548251	-3.19393486407275	0.000112191968622159	0.00312143588713412
Merged-chr4-108790688-4	chr4	108790187	108791187	+	956.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9599.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	2.70709628407032	3.07335323294612	2.82268749336976	2.53698503375122	2.43107290082293	2.4366288075345	-2.53380386047774	0.00385121156465004	1
Merged-chr4-35223653-4	chr4	35223163	35224163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2217.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	7.79700584528222	7.92010451108759	7.68874456681145	8.06928887425047	8.31547921840239	7.7452327549147	0.376373293452422	0.130986941866074	0.483655758340434
Merged-chr2-145859507-4	chr2	145858994	145859994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-43747.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.28800284060727	4.58913566638479	5.04835374087349	4.78977179893708	4.58422073737935	5.23714670219391	-0.25436921502713	0.581230326201152	0.873246537431079
Merged-chr6-115344258-2	chr6	115343758	115344758	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16693.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.04540354315582	6.25810018424894	6.09023612428735	6.0917812143221	6.29792860941719	5.98930956263282	0.0100797742448165	0.972756012427653	0.993881982649774
Merged-chr13-112417174-2	chr13	112416674	112417674	+	893.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46896.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.163190959392	4.91664955430274	4.75499026317618	5.06779848341964	5.20505400089305	4.82174673821558	0.187976513027715	0.638761824772036	0.897744982022018
Merged-chr4-139170462-2	chr4	139169954	139170954	+	596.333374	f0_balb.idr|f1_balb.idr	Intergenic	LTR79|LTR|ERVL	10201.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	7.03643752117864	6.79735211259533	6.4665865298952	6.20885383025646	6.14526735809333	6.08476843068808	-1.04908141504625	0.000334639130533085	0.00762215054118495
Merged-chr7-110060960-1	chr7	110060460	110061460	+	1000.0	f0_balb.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-742.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	8.3857892727306	8.5730061523387	8.06414005643065	8.17360350441122	8.47575144648917	8.17677941026258	-0.106853092337366	0.661460648141263	0.90639160796631
Merged-chr3-95315228-4	chr3	95314692	95315692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029789)	promoter-TSS (NM_029789)	2.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	7.56335013950888	7.80672348731426	7.78124983509127	7.53088604646338	7.3924666781342	7.53306811333721	-0.345417898582786	0.130661953651568	0.483186228268893
Merged-chr7-63914260-4	chr7	63913737	63914737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-2620.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.82930155376012	6.81536925837754	6.77874890432196	6.71409294200331	7.17473953135828	7.14854963708611	0.340539760192187	0.202344091311489	0.592169839736095
Merged-chr6-113342654-1	chr6	113342154	113343154	+	552.0	f0_balb.idr	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	1268.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	5.87029581515987	5.73512645094998	5.8277710216146	5.24788614825615	5.32063257585996	5.69190043382725	-0.729809836997597	0.0297227881539145	0.207626215605364
Merged-chr12-4477217-7	chr12	4476704	4477704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010881)	promoter-TSS (NM_010881)	-22.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	6.28050363455282	6.62921455757903	6.72022127624481	6.41314290094892	6.30647376174105	6.37527502972431	-0.304122671660847	0.284711181208691	0.682421085006849
Merged-chr14-55089377-4	chr14	55088851	55089851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	2697.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	6.0898030886828	6.0147779764427	5.57051481820271	5.74283902183295	5.65218219309913	5.6044505371777	-0.458579761762332	0.164331593179745	0.538737764678313
Merged-chr12-40469721-2	chr12	40469221	40470221	+	717.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23668.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.87300895424823	4.70665942466301	4.54024093852872	4.95414896221962	5.34425714838767	4.74243826437647	0.729257328788732	0.0889009144275388	0.395978121497064
Merged-chr8-11452211-4	chr8	11451710	11452710	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25719.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	7.99934086628464	7.92791855182667	7.72599398186122	7.7981463818827	7.83771863817252	7.44457021390624	-0.258652844515021	0.282044886822955	0.679908771156903
Merged-chr7-100372068-4	chr7	100371568	100372568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	-165.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	7.06061592631849	7.28216531043737	6.93245658154883	6.9586690871805	7.13963118254774	6.88814809291036	-0.151924155556181	0.553848902735823	0.862560814823122
Merged-chr19-29496390-4	chr19	29495877	29496877	+	844.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25610.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.20614138600581	6.44640898711497	6.32009244154386	6.50714793138874	6.58761046012381	5.89547682081189	0.0840579023854745	0.793393790240447	0.950406028169806
Merged-chr9-61946905-4	chr9	61946424	61947424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-125.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	6.0920183594517	6.20911581993248	6.01361530732699	5.99020857889577	5.98974768818814	6.05178209647437	-0.180145121146667	0.530860360067159	0.851363932161699
Merged-chr17-67384786-4	chr17	67384285	67385285	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-30294.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.19411452028491	3.49339276065765	3.41427554342775	3.5978819220036	3.25257329751428	3.43020523688329	0.221863199640427	0.720662012307755	0.928320221690591
Merged-chr13-89740419-4	chr13	89739947	89740947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	2065.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	3.79744603320632	3.38252842578681	3.46823805644746	3.81548901350118	3.71566473766753	4.0042949347728	0.925753317158027	0.113293128098134	0.449643790023599
Merged-chr9-118701433-2	chr9	118700933	118701933	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-10259.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.77284197666719	3.42516114604079	4.07950604602909	3.64605150136517	3.68186542137853	4.01652459899272	0.0225758917641838	0.969719725765878	0.993198925979166
Merged-chr12-3686670-4	chr12	3686148	3687148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	113664.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	6.03388773259967	6.29262432814812	6.05493331624552	6.10709216447698	6.50694274708531	6.20397158077781	0.261925278625611	0.38640954457588	0.767120406662124
Merged-chr12-17741730-4	chr12	17741249	17742249	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	50940.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.07217731274687	2.90497994315187	2.90321984898627	3.17628339661273	2.79451225569184	3.0386056439819	0.210624163805128	0.765507495381926	0.942148336413151
Merged-chr3-126598140-3	chr3	126597641	126598641	+	826.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 1 of 18)	intron (NM_001025438, intron 1 of 18)	1190.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.51877760512974	6.77671067115874	6.59187490280273	6.90289138827053	7.06309271610895	6.73400099293166	0.437540647655671	0.0996910186111586	0.421076063914581
Merged-chr6-145304703-3	chr6	145304188	145305188	+	860.288879	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54136.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	7.24660356459128	7.30296733483007	7.22699256725959	7.98755173487748	8.25268322485826	7.84448533787716	1.13725549695586	1.39291212464215e-06	7.25807547108564e-05
Merged-chr13-47173382-1	chr13	47172882	47173882	+	549.0	f0_balb.idr	intron (NM_146042, intron 1 of 7)	L1MC3|LINE|L1	-20621.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.71547827292902	2.97950338330873	2.98522721678597	2.73846104776072	2.56695421614923	3.16729288323478	-0.249027736794495	0.751818217298064	0.938016588905039
Merged-chr10-98542771-3	chr10	98542264	98543264	+	791.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-190897.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.39390975654336	3.94818283057885	3.92191782559883	4.41109424556405	4.58343258360785	4.15382110723677	0.768142099062076	0.136319076496187	0.493336840191226
Merged-chr2-128943917-5	chr2	128943412	128944412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020594, exon 1 of 9)	exon (NM_020594, exon 1 of 9)	108.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	6.92491333569518	6.98299291271094	6.85647648569422	6.51969430416323	6.66574005443916	6.65127387647675	-0.486135158594895	0.0525843028526592	0.293363488223898
Merged-chr18-39560924-4	chr18	39560418	39561418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73673.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.39870175132497	4.28895109541313	4.1150268045782	3.85541946525851	3.89590859362049	3.88039243941902	-1.17639991301594	0.017467046230234	0.147557644203318
Merged-chr9-65535390-4	chr9	65534883	65535883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44704.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.40813439186973	8.05806974446233	7.86893775404214	8.0238964564754	8.1406175934176	7.66386704825717	-0.242674272556094	0.356032872866871	0.742919807519939
Merged-chr1-183264279-4	chr1	183263828	183264828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-32732.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	7.2354287242568	7.33354910472907	6.81997233960099	6.85534300273061	7.0572009627067	6.56959348742808	-0.460780483106156	0.109917370935458	0.44322774900885
Merged-chr14-62066927-2	chr14	62066427	62067427	+	780.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	226052.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.341793382921	4.33078608290085	4.4077981773073	4.34674189947911	4.13547636972412	4.30115971705697	-0.266040984031292	0.555313146090292	0.863191483122339
Merged-chr18-13008408-2	chr18	13007908	13008908	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	1418.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	4.20849567017375	4.37922760096311	4.0050217492141	4.21311197027493	4.1888631683161	4.17505636830288	-0.0658170842136924	0.890355405133125	0.974513293810689
Merged-chr7-25703969-4	chr7	25703466	25704466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15087.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.01085061935652	7.00432289450086	7.18377200997647	6.85768136058852	6.99954056084799	7.17081328031153	-0.0807244957588164	0.745977902226652	0.936260355453809
Merged-chr17-24886543-4	chr17	24886019	24887019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355396)	promoter-TSS (NM_001355396)	-124.0	NR_152137	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	7.31601991944156	7.63763522968896	7.06332378133809	7.28643764247301	7.43069674543702	7.22483423795534	-0.0736872177807542	0.780849488690026	0.946078518476608
Merged-chr11-102432239-4	chr11	102431759	102432759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	1937.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	8.12805346848257	7.99314513739432	7.75407350764214	8.15982608046635	8.37259593689214	8.00090279596235	0.309744377985086	0.192218027052416	0.57920205203809
Merged-chr2-58923787-2	chr2	58923287	58924287	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	168603.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.94542488410019	6.07036465371445	5.62367802715399	5.51891070728392	5.71743282066029	5.74150264377884	-0.437048877168391	0.180407061596775	0.562200321386632
Merged-chr7-28766632-4	chr7	28766123	28767123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122765)	promoter-TSS (NM_001122765)	21.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	8.78475606687246	8.85050308893852	8.23148692338091	8.59876649195523	8.84863852930877	8.17470238649445	-0.109821066151557	0.696047168252849	0.919291538728398
Merged-chr12-86947957-3	chr12	86947447	86948447	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	CpG	604.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	6.70804713552053	6.84646140087929	6.13119227577142	6.43706600538554	6.29000311826484	6.14605665020004	-0.502059938035597	0.113478176100727	0.450109011832741
Merged-chr5-129995299-3	chr5	129994882	129995882	+	909.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357025, intron 8 of 10)	intron (NM_001357025, intron 8 of 10)	7667.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	4.02493205857381	4.02176984877683	3.64824230672636	3.55009720726088	3.2486481491243	3.29885896005748	-1.97124144469429	0.0014575758633534	0.024207978530521
Merged-chr6-34479268-3	chr6	34478736	34479736	+	655.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	2880.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	3.14283957659448	3.03343149491547	2.98098324931502	3.09393918891659	2.97304377558091	3.22788981349549	0.176181838052259	0.79104133786493	0.949694766870106
Merged-chr11-54485182-1	chr11	54484682	54485682	+	659.0	f0_balb.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-37663.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.34647332980398	3.31301438798802	3.3472356984106	3.35479743021721	3.26446608576181	3.24654211785462	-0.180936394760346	0.764541407241217	0.941979298344481
Merged-chr19-41105149-2	chr19	41104672	41105672	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011904, intron 11 of 20)	intron (NM_011904, intron 11 of 20)	-28059.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	4.30779829300295	4.16339794339106	3.99280252646367	4.31125766704048	4.44485756967907	4.30845673362635	0.514095576289194	0.273064599998216	0.670306681833596
Merged-chr9-47529356-2	chr9	47528856	47529856	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-814.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.90192813623581	5.77755650919999	6.07916213530972	5.88066355030686	5.86411570087834	5.7377670104463	-0.146619168536721	0.632417655453767	0.895534618336993
Merged-chr6-124756820-4	chr6	124756342	124757342	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007881)	promoter-TSS (NM_007881)	-355.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	4.98012989447198	4.69455929733367	4.83712291872859	4.86546340207614	4.4095881118262	4.67005640166167	-0.431211407732601	0.311467315099842	0.706502339869604
Merged-chr14-47569247-2	chr14	47568722	47569722	+	781.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-788.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	3.04228111260445	3.0704975917688	3.11165519858237	3.00834166188309	3.07137710278467	2.81313477962764	-0.44962390870708	0.514576711371977	0.843107848235413
Merged-chr6-72553656-3	chr6	72553149	72554149	+	729.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	4002.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	5.9118192975216	6.09399764218	6.72220989563114	6.24675975578249	6.0929703613799	6.23245928255089	-0.15036740580264	0.659663050617168	0.905586631697299
Merged-chr18-60792143-4	chr18	60791635	60792635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-11714.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	3.81115968181333	3.76038786847907	3.42875752506983	3.9528872010221	3.74958896978155	3.62298369486087	0.325369007497864	0.573106244438613	0.869947175774374
Merged-chr6-39005274-2	chr6	39004774	39005774	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 5 of 12)	ORR1F|LTR|ERVL-MaLR	62312.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	5.08190908178953	4.14323497014257	4.72302878116521	4.65193666741536	4.67124486703833	4.78910235752235	-0.0201707517465339	0.967438897605874	0.992555129128888
Merged-chr3-108904079-4	chr3	108903556	108904556	+	929.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356292, exon 7 of 7)	exon (NM_001356292, exon 7 of 7)	7673.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	5.81481231210667	5.8613573953507	6.07959919342994	6.11639901248062	6.13249117907649	6.33763233188349	0.479622399705301	0.104808790991786	0.432007226474686
Merged-chr16-4839810-4	chr16	4839307	4840307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	4391.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	6.82795449203614	7.07431291952514	7.00989016963896	7.06837750184611	7.10929716197702	6.67492842811532	0.00290020264826737	0.991336287322102	0.998222399926149
Merged-chr13-52156689-2	chr13	52156189	52157189	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59948.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.52571086963696	5.60176231447111	5.3496526029517	5.24799850692032	5.51795582750666	5.56120299968047	-0.106799183965975	0.754531204512328	0.938987682003926
Merged-chr8-11007270-4	chr8	11006776	11007776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046017)	promoter-TSS (NR_046017)	-574.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	5.19088857813357	4.83624100433418	4.53376849869337	4.58864708975231	4.04055508898401	4.21703900073818	-1.42577480693475	0.0038143798103012	0.0501638873487502
Merged-chr15-102517195-4	chr15	102516672	102517672	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009582)	promoter-TSS (NM_009582)	-168.0	NM_009582	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	5.66925161059172	6.05785037327432	5.95683021370527	5.52888223229328	5.89721703423803	5.64029364745991	-0.352086331015106	0.29171834128123	0.689198857889432
Merged-chr9-7337304-4	chr9	7336788	7337788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7109.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.39053669109576	6.55407049339397	6.57667140059168	6.27027059721749	6.26247435449984	6.5696923575285	-0.230694442321552	0.406221032960781	0.780583800069297
Merged-chr16-55750201-4	chr16	55749729	55750729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71909.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.74759407210578	3.92905221782592	3.77457072182133	3.69957771094952	3.50536080162993	3.74153691220841	-0.592118172597397	0.277065816838966	0.674343034039447
Merged-chr2-117413626-3	chr2	117413138	117414138	+	725.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70761.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	3.03019866271609	3.19466984302864	2.96441947788049	3.62312241325043	3.22054161764271	3.29107983492348	1.31733567585963	0.0520351312633938	0.291388330450533
Merged-chr14-52256139-2	chr14	52255639	52256639	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-18567.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	3.07765937489273	3.3619111037058	3.1463870388317	3.36818401988073	3.38696071880224	3.33716354511448	0.642131665103712	0.30925776672569	0.704851546338096
Merged-chr2-11772478-2	chr2	11771978	11772978	+	955.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5107.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	4.74547239199475	4.8775017613566	4.95672812276438	5.1627643954731	4.83900026232603	5.44831256739744	0.646726411220985	0.111422280891999	0.445882034745417
Merged-chr13-14115415-3	chr13	14114909	14115909	+	906.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194262, intron 2 of 23)	RMER16|LTR|ERVK	51625.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	3.00188793054359	3.03884238700418	3.01871546340799	3.1504722578308	2.97633601274996	3.09120099948245	0.234981233420669	0.721380233745801	0.928468816889347
Merged-chr4-19673171-4	chr4	19672654	19673654	+	931.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_074089, intron 4 of 23)	intron (NR_074089, intron 4 of 23)	35850.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	5.8217681553009	6.10208012955882	5.91728350633414	5.54891138611711	5.41549617285585	5.44121720876746	-0.891419737329183	0.00519348995640623	0.0627745369396644
Merged-chr11-73024657-4	chr11	73024152	73025152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	5644.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	5.84985964131347	5.78910764337257	5.69243324082895	5.62660034239713	5.63590905909376	5.22685932113215	-0.475945375669402	0.156265549217178	0.526631989439569
Merged-chr16-32610983-2	chr16	32610483	32611483	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357298, intron 1 of 18)	intron (NM_001357298, intron 1 of 18)	1861.0	NM_001357298	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	3.56818545375603	3.47633905051571	3.62905781991692	3.58556084082333	3.14390524809992	3.43143735191878	-0.600791129713013	0.329210974572352	0.721152738507735
Merged-chr5-72262166-4	chr5	72261665	72262665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	58822.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.89342403721732	6.72993735964049	6.55100148611016	6.61988263047882	6.8069363099833	6.64505991723699	-0.0655349737084241	0.805123194721404	0.953787743121181
Merged-chr2-29935437-4	chr2	29934950	29935950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028923)	promoter-TSS (NM_028923)	41.0	NM_028923	74412.0	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	6.26183673716496	6.6067348898988	6.57137307786457	6.34217392611377	6.4472881586951	6.32294504265988	-0.180410740581183	0.519852671361299	0.846048097455962
Merged-chr2-30794831-4	chr2	30794324	30795324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_198000)	TTS (NM_198000)	6913.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	4.26212652353606	4.23935777934944	4.38933264033753	4.17315363453779	4.1376253815579	4.49470937856226	-0.0723825525300942	0.876642641892242	0.971344419120637
Merged-chr9-40241598-4	chr9	40241101	40242101	+	767.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27615.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	3.97593883437099	4.01117463336072	4.27488524527593	4.65410702430599	4.53093455562466	4.38803108161668	1.20713906974561	0.00920793017687885	0.095070536562568
Merged-chr7-114276156-4	chr7	114275655	114276655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-39.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	6.34445980581836	6.38494711290578	6.43433635436904	6.45208953833893	6.68294673622287	6.49383841762996	0.271569668501749	0.310234696239295	0.705802171069044
Merged-chr17-8164126-3	chr17	8163635	8164635	+	812.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	5.14664858476533	4.83303936903283	5.4561365057218	4.71994437353046	4.73955141728203	4.79466325643059	-0.89163090378015	0.0305240930865502	0.211266739107109
Merged-chr2-127444595-4	chr2	127444139	127445139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029629)	promoter-TSS (NM_029629)	-74.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	6.74744664085931	6.9374401312045	6.79825981541019	6.46912033250516	6.88017878163316	6.52659911299608	-0.284101783951209	0.303357543585822	0.699902971652469
Merged-chr5-124094949-2	chr5	124094449	124095449	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	849.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	2.31766847854349	2.31074087463634	2.42117392263325	2.1579090026047	2.2647903126339	2.17052149385896	-1.02656803615495	0.241879514261697	1
Merged-chr3-127780492-4	chr3	127779992	127780992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	35.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	7.80701841341	7.90856193057438	7.58006943039393	7.59049346866358	7.93423563073718	7.57737970030902	-0.0845994696695342	0.730441159523332	0.930884711548651
Merged-chr13-56171531-2	chr13	56171031	56172031	+	541.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7354.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	2.64755791767714	2.98568935036632	2.94084398043575	2.79770764812285	2.71984521413012	2.77125795734068	-0.528127326346483	0.474903199029778	0.821727753368561
Merged-chr4-45523071-3	chr4	45522515	45523515	+	820.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	MER58A|DNA|hAT-Charlie	7813.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.88616006086079	4.27050998299688	4.14459694198335	3.71047237585634	3.68300162923279	4.21185067230838	-0.68456862326812	0.214812452281963	0.608025122613788
Merged-chr17-74454849-4	chr17	74454357	74455357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	4251.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	6.78091059945211	6.93397893827309	6.87060236129896	6.81609912638012	6.86485812484478	6.77976263418421	-0.0619433831405746	0.801607309550974	0.952995299515894
Merged-chr1-127774644-1	chr1	127774144	127775144	+	1000.0	f0_c57.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	480.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	8.35093756135462	8.81222293006129	8.41988937577753	8.54107908613449	8.67467568904309	8.63469251964765	0.0964162014186579	0.675474484087082	0.912168917206654
Merged-chr13-60606632-2	chr13	60606132	60607132	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	4421.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.89079808591468	3.64880031235179	3.79915239571001	3.64313342477399	3.46956115423044	4.14050276495174	-0.027899925429894	0.962289389784924	0.990814379307595
Merged-chr13-64151743-4	chr13	64151240	64152240	+	902.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	intron (NM_001361047, intron 1 of 5)	633.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	6.1787917477143	6.20869879434725	6.06449514455	6.54848772372338	6.81550002294981	6.14946158405026	0.64252754402285	0.037193701642025	0.237971051613196
Merged-chr7-83399941-3	chr7	83399445	83400445	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184986.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.51130598030214	3.73731862773996	3.99742962525536	3.76163001978303	3.46549756291105	3.83437844801941	-0.21986709037111	0.70482388822133	0.922557478283525
Merged-chr7-125470132-3	chr7	125469635	125470635	+	843.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	21407.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	2.3581352976083	2.41065252021321	2.4667937294956	2.39260089438104	2.01246455515297	2.28049184411914	-1.18869449013586	0.215375070130908	1
Merged-chr5-99543719-2	chr5	99543219	99544219	+	612.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	MLT1K|LTR|ERVL-MaLR	185341.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.0459024711424	2.68505600416281	3.30105763577948	2.79541794370067	2.7014303946368	2.67717439235408	-1.51017911079671	0.0550260009177615	0.301402375377862
Merged-chr1-105999198-4	chr1	105998685	105999685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8779.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	6.66808278460922	6.54906189397808	6.68596914527335	6.50060717957566	6.51775740319633	6.63270509243144	-0.136302583362827	0.597815342048041	0.880469749736855
Merged-chr11-83733255-4	chr11	83732762	83733762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	-13678.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	6.09824325942728	5.83985881859269	5.49886363631697	5.77735750706841	5.90841018914102	5.79226432506771	-0.0327008968583823	0.92198542914776	0.982542868764899
Merged-chr2-79618308-3	chr2	79617795	79618795	+	941.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17130.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	5.05345549404943	4.71985563460484	4.72955572623454	4.12484940169048	4.02961891399549	4.38289056416676	-1.72396585904189	0.000168850978810447	0.00436327709467692
Merged-chr9-122865938-4	chr9	122865431	122866431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173364)	promoter-TSS (NM_173364)	75.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	7.51666874921773	7.69517287549815	7.18535768174879	7.51257069427353	7.57948635151066	7.20467734370134	-0.0615869242381581	0.815439720428458	0.956370078970016
Merged-chr2-151575351-1	chr2	151574851	151575851	+	554.0	f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	2728.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	4.21785698876845	4.24500690071259	4.39907757141226	4.37763042989914	4.33399287226829	4.58581511414145	0.381452741452509	0.394701546785953	0.772514857254462
Merged-chr7-145257257-2	chr7	145256710	145257710	+	986.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132642, exon 19 of 24)	non-coding (NR_132642, exon 19 of 24)	26801.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	2.3172609975504	2.17140614548173	2.54720430983531	2.14285742576526	1.99156578195673	2.43916804337112	-1.0112988234521	0.293077397820373	1
Merged-chr16-90224366-2	chr16	90223866	90224866	+	638.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_011434, exon 3 of 5)	exon (NM_011434, exon 3 of 5)	3624.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.32494201012439	3.4404246820832	3.29729691995022	3.19352780975301	3.03473873225313	3.6301722645456	-0.209073825588285	0.75296754845019	0.938522159046144
Merged-chr4-21878210-1	chr4	21877710	21878710	+	550.0	f1_c57bl6.idr	Intergenic	Intergenic	-1436.0	NM_172687	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	3.46736536845886	3.56801047990782	3.82443870170505	3.60897275859466	3.46533754856048	3.69871510218218	-0.112160360656981	0.84473622222847	0.96373428957366
Merged-chr2-92483762-4	chr2	92483262	92484262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-23244.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	6.57860124640202	6.76909603995868	6.94408539460951	6.75417413397699	6.96291408812434	7.11602858918858	0.284288492110939	0.289562638185731	0.687278660414705
Merged-chr2-75964221-3	chr2	75963706	75964706	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	13973.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	4.94975192252672	4.9490400151429	4.48019895156412	4.73757985498447	4.46860948033007	4.54934971221078	-0.547871852170275	0.20751578613854	0.59831527723439
Merged-chr8-64945490-2	chr8	64944990	64945990	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1695.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	3.35339580497275	3.15645218383809	3.2984469100331	3.57245302303224	3.29268433136732	3.25316997773262	0.437547998048634	0.483674841094131	0.826415659002453
Merged-chr5-65986490-3	chr5	65985974	65986974	+	844.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	17811.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.43137203987943	4.49249957833145	4.24625400269958	4.29948773272672	4.4486620601494	4.06408573451742	-0.281544838124436	0.550180907413569	0.860631826326949
Merged-chr11-71850592-4	chr11	71850104	71851104	+	959.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	89518.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	5.55143816941858	5.88454116491277	5.1310089465398	5.51827626153917	5.54339520392297	5.04177060371345	-0.32880930874615	0.416585059159	0.787478068119906
Merged-chr9-100525398-4	chr9	100524893	100525893	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	L1M4c|LINE|L1	-18537.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	3.16621334947846	3.38756174207174	3.16262060538624	3.16692993629616	3.22258561112471	3.23494188984435	-0.163361104562812	0.796251937458184	0.951410019719943
Merged-chr17-42937673-4	chr17	42937171	42938171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61247.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.42440672454893	4.29754753571404	4.32534804124064	4.40366346357213	4.53275803499162	4.71821651655298	0.507335104129038	0.247156611097863	0.644145276280485
Merged-chr18-6516137-4	chr18	6515597	6516597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007935)	promoter-TSS (NM_007935)	11.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	7.72366971932947	8.11701665001985	7.93359097265949	7.74684367026806	7.88214624095256	8.06229862892506	-0.0509932861236149	0.830831804838112	0.960370002015736
Merged-chr11-76589320-4	chr11	76588781	76589781	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11542.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.01888983145361	8.18048686146938	7.92727689409244	7.93334366733175	8.30376117612427	7.70831001517271	-0.0475068226685444	0.851743163490932	0.96531854415899
Merged-chr15-31367431-11	chr15	31366934	31367934	+	877.4560550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026153, exon 1 of 2)	5' UTR (NM_026153, exon 1 of 2)	325.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.27358221840188	4.07919015218917	3.92797776144047	3.93786498755688	3.5448421340467	3.48644029304194	-1.35927879162133	0.01821839056541	0.152062979452967
Merged-chr12-70912059-4	chr12	70911554	70912554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25803.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	5.33522327759865	5.26150189187353	5.26224693921287	5.09609365897366	5.37016491462127	5.50308925575323	0.0833522928346367	0.813849506200354	0.955953496123874
Merged-chr14-32801522-3	chr14	32801005	32802005	+	724.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15542.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	3.12482003500241	3.2034886416764	3.40532383087329	3.00391094671015	2.93293249813686	3.09780254088186	-1.07388379589829	0.107372272683881	0.437437919383098
Merged-chr6-72149195-2	chr6	72148695	72149695	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-25998.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.26870855838905	3.52074919696096	3.988369749382	3.27796426934596	3.38887826180349	4.01338898440271	-0.0841227260970958	0.902935596680244	0.977658983455749
Merged-chr18-23868527-4	chr18	23867993	23868993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	64523.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	8.15232722826405	8.28048521971345	8.02469590478434	7.85705995361378	8.14696010560615	7.64020877298476	-0.356352249702068	0.144417879429019	0.507201164636624
Merged-chr5-74618690-4	chr5	74618185	74619185	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359074, intron 5 of 10)	intron (NM_001359074, intron 5 of 10)	59187.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.64330803589243	3.20868799694512	3.50978661122096	3.31980574591525	3.0345223904761	3.18572696120533	-1.14280790957144	0.0823192882638374	0.379332363801987
Merged-chr14-75075428-4	chr14	75074923	75075923	+	967.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	55460.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	4.39608405965205	4.24869369645056	4.11563078216836	4.68596149240171	4.57891876301797	4.59753991211772	0.898503415665406	0.0430957028579045	0.260395559029883
Merged-chr5-77293021-4	chr5	77292523	77293523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17063.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	3.92829435037048	4.29823036562521	4.85084010535076	4.20572126977695	4.05615177803006	4.37585056722619	-0.505190494684915	0.350635999205996	0.738611374521169
Merged-chr10-80677328-4	chr10	80676831	80677831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1038.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	9.59404860809007	9.86892076744695	9.17353422372723	9.37302282253225	9.93001847201981	9.21687597810505	-0.0411965402061742	0.884969488177532	0.973538624783452
Merged-chr10-4405102-4	chr10	4404597	4405597	+	732.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358796, intron 12 of 13)	intron (NM_001358796, intron 12 of 13)	-16989.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	2.34720087975794	2.44737242690288	2.62761224045079	2.23783155607974	2.45254454826778	2.5183347295366	-0.417627201807518	0.620878502217201	1
Merged-chr15-78174297-4	chr15	78173794	78174794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025931)	promoter-TSS (NM_025931)	-186.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	5.41012620338175	5.39753963083663	5.69552121501096	5.36887383364877	5.57361011592864	5.51814310300274	-0.0100155492212884	0.976344486219647	0.994694354430036
Merged-chr4-132817028-2	chr4	132816528	132817528	+	887.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20664.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	5.53398995606964	5.14342885409432	5.58924108918279	5.49418455498422	5.18182164087357	5.6509538867257	0.0294990896989213	0.936801498620826	0.986037792257163
Merged-chr5-130278335-4	chr5	130277836	130278836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 8 of 15)	intron (NR_153350, intron 8 of 15)	21299.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	4.8202502931448	5.2075919219901	5.57079763155634	4.94566640188368	4.91901562379545	5.2213311868129	-0.40881122859391	0.325802991402154	0.718259738003882
Merged-chr14-50842697-4	chr14	50842201	50843201	+	944.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 28 of 54)	MTE2b|LTR|ERVL-MaLR	27853.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	6.01938709690482	6.03533300803571	6.09600924752131	6.42036326577091	6.5746259433166	6.3043160026283	0.665202985570511	0.0171945607284913	0.14600937687724
Merged-chr2-132104693-2	chr2	132104193	132105193	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	40415.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.9449236579424	4.62589065777526	4.87981574565865	4.81695827146257	4.99522101325663	4.98046343423143	0.251681741009883	0.524060350686811	0.848564132870479
Merged-chr19-3909853-2	chr19	3909353	3910353	+	721.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271443, intron 5 of 6)	PB1D9|SINE|Alu	-2720.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.30763225420073	5.00245913213382	5.35232610290497	5.17616478793273	5.15308087265246	5.16517988139938	-0.11995192521483	0.741292821523193	0.934802565252866
Merged-chr3-142496794-4	chr3	142496295	142497295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153564)	promoter-TSS (NM_153564)	-139.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	6.7279488253531	6.97509178152114	6.62256244740479	6.88983446804786	6.84640442491332	6.73120689598573	0.0546513857233822	0.834791320593008	0.96138272464184
Merged-chr2-37423067-4	chr2	37422557	37423557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290642)	promoter-TSS (NM_001290642)	-154.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	6.85633816644783	6.78776609538932	7.23600877534472	7.07576244952964	6.9134962587048	7.29340665843543	0.19845270713289	0.468757661510185	0.818701612865445
Merged-chr12-99394930-2	chr12	99394430	99395430	+	830.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	55144.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.06125036702627	4.05181635247757	4.25053338992537	4.08144054179543	4.12247869727889	4.27411099639736	0.112779393039635	0.812433884689154	0.955578304935189
Merged-chr1-131526077-2	chr1	131525577	131526577	+	851.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 1 of 22)	CpG	1284.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.9078306331659	5.86854484929928	6.38417783156248	6.19208509075322	6.31672385275409	6.39009917885436	0.404491166042116	0.192202388451325	0.57920205203809
Merged-chr8-10909958-3	chr8	10909465	10910465	+	659.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	10043.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	4.21701817536845	4.56743089894985	4.20692573456461	3.936990289333	3.87208217074279	4.03562741627337	-1.15727199536078	0.0192836516574115	0.15758731949616
Merged-chr11-29788312-2	chr11	29787812	29788812	+	760.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 24 of 41)	(CA)n|Simple_repeat|Simple_repeat	37356.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.28570562745005	3.5366218065909	3.66775156639839	3.58718366837388	3.59873072698688	3.47232139437423	0.203464932064347	0.729578142551817	0.930635866770147
Merged-chr11-59180849-4	chr11	59180339	59181339	+	836.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080454, intron 1 of 1)	L1MD3|LINE|L1	1987.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	3.07402455557936	2.86443912419776	3.29000909363777	3.11488053326065	3.01445853520877	3.25300113982406	0.19888484201649	0.770439773786076	0.943392092118189
Merged-chr16-48994107-4	chr16	48993598	48994598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	14.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	7.94487651385322	8.13071509689706	7.58431635948014	7.80748823639354	7.88972744227099	7.66052990796829	-0.173645227377308	0.485506049490814	0.827495041704636
Merged-chr18-34504872-2	chr18	34504372	34505372	+	833.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	1951.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	4.87376014365115	4.7756449341985	4.81719027569024	5.21445707278266	5.32121101217474	5.17237186992713	0.894728045905924	0.0147827230719569	0.131321061148137
Merged-chr4-108327184-4	chr4	108326749	108327749	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027250)	promoter-TSS (NM_027250)	-903.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	6.3328617168122	6.45590846480498	6.57277901090791	6.75523847068918	6.72138752818575	6.45383507015398	0.330625846844893	0.222450381640014	0.617420572917785
Merged-chr11-3187719-8	chr11	3187172	3188172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 2 of 32)	B1_Mus1|SINE|Alu	5791.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.51428632564644	6.8690523872549	6.78471651348328	6.63392461513378	6.54661178630226	7.49059693619196	0.353924869685889	0.307910362666183	0.703947279446131
Merged-chr17-47772113-2	chr17	47771613	47772613	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-13631.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.98042099254535	3.11483440860245	3.40226702144057	3.12285163937829	2.78829678213792	3.26295301906675	-0.450348815159621	0.529373340291508	0.850900393266202
Merged-chr1-36059022-4	chr1	36058519	36059519	+	843.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-9381.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	2.6984545581321	2.62440140362309	3.00765857366138	2.66037612434084	2.73433545360252	2.46350014575185	-0.827247332045188	0.310129472549775	0.705697846471454
Merged-chr7-100537622-3	chr7	100537086	100538086	+	669.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183270, intron 1 of 1)	intron (NM_183270, intron 1 of 1)	486.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	7.2043025988664	7.26445458603836	6.87749053962543	6.8264848264328	6.86198532875606	6.34580405092789	-0.646448470606124	0.0248146241646637	0.186217103850409
Merged-chr11-35308668-4	chr11	35308175	35309175	+	944.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	187219.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	2.82292596481757	2.89401053699816	2.93025653150585	3.19346805571558	3.33605399433855	3.40708635461675	2.00929692724259	0.00357981665664673	0.0479815374301322
Merged-chr7-80802014-2	chr7	80801410	80802410	+	635.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	1421.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.41220729452336	6.29297486170101	6.20950947063931	6.36111799872668	6.53866584312592	6.29084270864636	0.159202110368049	0.566284048801394	0.867280749726972
Merged-chr11-98963862-3	chr11	98963352	98964352	+	902.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	-1020.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.39418060852944	3.01321585641915	3.25173425843314	3.10269195166009	3.17934678476553	3.6338761970993	0.362128153503826	0.594951270250085	0.87924603206665
Merged-chr13-69537533-2	chr13	69537033	69538033	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3669.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.05919544783359	4.05175378074586	3.69427808894401	3.36872161359231	3.20844319463291	3.35806490718144	-2.43521149846845	8.85950476340686e-05	0.00256232767589002
Merged-chr16-85173228-2	chr16	85172745	85173745	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001198825, intron 1 of 15)	CpG	462.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.34060203922747	7.64545023050793	7.60053162482191	7.48331942720973	7.26294119384951	7.26281321400679	-0.285485128802392	0.238290007548598	0.634951642748382
Merged-chr10-10424555-4	chr10	10424041	10425041	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 10 of 36)	MLT2B4|LTR|ERVL	47773.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.18902821226093	3.3959196056848	3.23355214262852	3.62966383977058	3.2725677090245	3.63730412541932	0.913413299972996	0.145654951176881	0.50882173592994
Merged-chr2-129100994-4	chr2	129100519	129101519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009086)	promoter-TSS (NM_009086)	23.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	5.09419259014724	4.8839626663711	5.13247072649469	5.24496390915407	4.89898654483488	4.836143551876	-0.058935068156461	0.880192470358079	0.972457465737931
Merged-chr4-33251914-3	chr4	33251414	33252414	+	937.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.89654888775135	4.12096264518937	4.15200218790337	3.68129400278806	4.10057369698847	4.03663379199946	-0.303059698428903	0.564716197724387	0.866552552710737
Merged-chr19-46620142-2	chr19	46619642	46620642	+	557.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-3259.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	3.20625403681228	2.82780446786502	3.22602034100788	3.27935226758066	2.94273847992114	3.45743419645353	0.592849015276473	0.40691481887623	0.781142268902047
Merged-chr15-85010396-3	chr15	85009936	85010936	+	818.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6705.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	4.08024585476981	3.4736718065413	4.14713583742281	4.16983582454115	4.18852201771628	3.87461213334341	0.4515010989389	0.438429057026803	0.800536502226035
Merged-chr9-50459701-4	chr9	50459198	50460198	+	995.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34827.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.80445559095213	4.24789973634636	3.64972954432675	3.83992814669972	4.17908492377943	3.89063580505822	0.143867767999896	0.801492301134601	0.952995299515894
Merged-chr7-73620421-2	chr7	73619921	73620921	+	919.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-62026.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	2.65277743753902	3.03472350676176	2.95646999431948	3.09261327540844	3.05788475614139	3.02965386596026	0.784185610727602	0.27967337293257	0.677347473156491
Merged-chr4-139381693-2	chr4	139381193	139382193	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1034.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	7.4778934677848	7.43324371707595	7.12325525244953	7.93986921189485	8.23390206458186	7.46228457153511	0.819017968785142	0.00403029555980079	0.0522112459816137
Merged-chr2-150824772-1	chr2	150824272	150825272	+	544.0	f1_balb.idr	intron (NM_153781, intron 15 of 19)	intron (NM_153781, intron 15 of 19)	17798.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.18167264113688	3.33404839654671	3.72143766805176	3.16022749358131	3.10115044094979	3.5521628927769	-0.562615993856347	0.402463692631884	0.77803538256851
Merged-chr17-86142495-3	chr17	86141983	86142983	+	816.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 1 of 20)	intron (NM_030133, intron 1 of 20)	2692.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	3.62376020619914	3.37687008773809	3.28591352583304	2.98547015014016	2.94632741450371	3.18241154207388	-1.78388119205606	0.00840859267648686	0.0892084890252605
Merged-chr17-24644094-4	chr17	24643563	24644563	+	792.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	894.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	3.9995313411676	4.04928322550503	4.1130130402718	3.81093929577229	3.96943021763363	4.08942221967392	-0.280925523280714	0.571521368883936	0.869547320544841
Merged-chr4-105271403-4	chr4	105270904	105271904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	114057.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.5124464399456	4.42437291128435	4.77501571650523	4.95999116651008	4.70554154900918	4.47247135969364	0.389672875382808	0.373475774418293	0.757431872687979
Merged-chr10-80578583-4	chr10	80578115	80579115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1319.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	5.51755341619854	5.76004684210053	5.99741075051231	5.79919319804976	5.96980152259435	5.9464337402596	0.261086723600751	0.417787574110795	0.788328494227065
Merged-chr15-100728750-4	chr15	100728263	100729263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	613.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	7.85985777515019	7.81726589127697	7.4474253038969	7.39572423704288	7.5621720694664	7.01675640334133	-0.541034814541642	0.0454170498443266	0.26904216105214
Merged-chr5-30848665-5	chr5	30848105	30849105	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	L1MC4a|LINE|L1	-13202.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	6.16052146668506	6.21406114370738	6.03837165433805	6.14674127833051	6.31644732238892	6.09944821418784	0.0900536224898582	0.752611706186805	0.938346259574037
Merged-chr2-158115993-3	chr2	158115431	158116431	+	778.733337	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009373)	TTS (NM_009373)	-24134.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	2.66445772811284	2.83784848276353	2.80161895809092	2.77675171719355	2.75204727386217	2.87430904905211	0.151308098445531	0.833498221926557	0.96108264611081
Merged-chr11-69654690-3	chr11	69654232	69655232	+	930.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009235)	promoter-TSS (NM_009235)	-305.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	5.72400447558315	5.64734147496434	6.03695210889106	5.63963012561462	5.77200664932219	5.87533358814864	-0.071041785093068	0.825497801099752	0.958821343666982
Merged-chr7-100817365-1	chr7	100816865	100817865	+	632.0	f0_balb.idr	intron (NM_178764, intron 4 of 8)	ID_B1|SINE|B4	46048.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	4.90636970397328	4.85240555335066	5.17330615697146	4.67819887686814	4.75727661649556	5.17545054646144	-0.218403902134071	0.595359939980475	0.879484259518443
Merged-chr10-49051050-3	chr10	49050560	49051560	+	785.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	736877.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	3.70431495372759	3.30929711734291	3.67030028093875	3.10288440869024	3.3891571987703	3.58938348048454	-0.734745182556545	0.257569219880711	0.654973161886306
Merged-chr12-26436564-3	chr12	26436105	26437105	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19847.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	4.92813301591577	4.89259660624367	5.0468517108376	3.90299620905149	3.76906694941283	4.12710968185643	-2.85044431944061	7.0141619591241e-09	6.60219896261084e-07
Merged-chr2-172437778-4	chr2	172437272	172438272	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2806.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	5.37810969042523	5.43633467679199	5.27368137881813	4.80516142139993	5.00534483667169	5.03616098027585	-0.863032027766114	0.0172789394648727	0.146484563932055
Merged-chr10-21607158-2	chr10	21606650	21607650	+	798.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	14005.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.14518407428043	3.85055424496238	4.06380714474502	4.80973559459162	4.54624562074237	4.81354245567455	1.84599386809832	9.70474217228999e-05	0.00276225213784043
Merged-chr3-145942163-4	chr3	145941667	145942667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	4153.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	3.91308863837679	4.03921213452272	3.54105599976057	3.68083618822766	4.0198907863659	4.03998653172944	0.20844363010704	0.715257955157223	0.926349618390309
Merged-chr14-57423504-2	chr14	57423004	57424004	+	665.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	-567.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	6.89583671149696	7.28019558406484	6.82332254355796	6.89874135591157	7.06158180008407	6.72183088463767	-0.174616354464927	0.528321257339584	0.85053360857083
Merged-chr1-24101277-2	chr1	24100823	24101823	+	882.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-982.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	2.76860187966461	2.74971727143774	2.79607959633962	2.57383303769921	2.7411104122002	2.61867029484055	-0.647413916217986	0.388936729298984	1
Merged-chr2-165034817-4	chr2	165034280	165035280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144892)	promoter-TSS (NM_144892)	-1.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	7.20744287598622	7.06493358854829	6.59842104936625	6.7927842070166	6.87747974118061	6.4277836046498	-0.41446479910649	0.166859950476787	0.54240433228749
Merged-chr4-8712433-4	chr4	8711932	8712932	+	856.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	MLT1H|LTR|ERVL-MaLR	22026.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.13724728013486	3.15712329039677	3.50175803358555	3.61458841548738	3.34945325460668	3.46615808028256	0.827600662517011	0.187318355128357	0.572271506774537
Merged-chr7-55843239-6	chr7	55842801	55843801	+	855.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	1230.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.03112436131518	5.88509575893399	6.23250420403927	6.00604801810485	6.22568436080943	6.63319283823541	0.432362378439031	0.180386044002068	0.562197990460863
Merged-chr11-116087583-4	chr11	116087072	116088072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-577.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	8.1588880941867	8.16711464382191	7.4522919106714	7.69902921166886	8.16304827673576	7.64559793472881	-0.157378070164052	0.596795116499922	0.880057563068895
Merged-chr18-23415358-3	chr18	23414844	23415844	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010087)	promoter-TSS (NM_010087)	-65.0	NM_010087	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	2.76833336741765	2.75166444680992	2.88790417788564	2.6982739689077	2.52186131661118	2.84261459830738	-0.609802898701802	0.418233346553294	0.788569493100235
Merged-chr5-92496288-2	chr5	92495788	92496788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	RSINE1|SINE|B4	9369.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	3.79930531852191	4.00004759558293	4.33894607679432	4.00464568041959	3.67956578656041	4.32547051385024	-0.104836674868156	0.852175139351387	0.96531854415899
Merged-chr16-91880048-4	chr16	91879530	91880530	+	837.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	MLT1B|LTR|ERVL-MaLR	51600.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.10860429756639	6.89011867663563	6.95676342164006	6.92102683904245	7.01330994491955	6.87192014799664	-0.074183433141602	0.76358498033513	0.941793063578371
Merged-chr11-110399068-4	chr11	110398586	110399586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011943)	promoter-TSS (NM_011943)	-16.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.65345598756172	3.84545831724029	3.83354203988751	4.18238788821269	3.73478279590523	4.04983902949352	0.676896922238966	0.208364446577997	0.599253037151319
Merged-chr7-49462686-4	chr7	49462185	49463185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 9 of 37)	intron (NM_175272, intron 9 of 37)	174150.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	5.64805052813137	5.99082953437179	5.71651253548716	5.65981462650587	5.35188281838688	5.43657306372859	-0.577963690158	0.0859561550762856	0.388223402897876
Merged-chr2-133457744-2	chr2	133457244	133458244	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-94415.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.15511749158409	3.09698314642114	3.19576131424219	3.07659013497304	2.75568213602963	3.03611142961413	-0.877121185591431	0.206544197682864	0.597141275948059
Merged-chr11-98018947-4	chr11	98018438	98019438	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159320)	promoter-TSS (NM_001159320)	-566.0	NM_001159320	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	3.6398898565623	3.19282590054411	3.72357549891823	3.84216979070272	3.96729503880524	4.03424815274701	1.38236175286693	0.0222463931487326	0.173247498476195
Merged-chr6-125430992-1	chr6	125430492	125431492	+	551.0	f1_balb.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-50488.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	2.38314730644102	2.20564614477413	2.26526356250666	2.4541180124954	2.38901064905611	2.66049375021039	1.37747475694926	0.108504774887985	1
Merged-chr6-100675120-4	chr6	100674501	100675501	+	928.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-3844.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	5.20722849604862	5.42918729971772	5.14514145691761	5.12792254494493	5.29625025298218	5.42867949736924	0.0229548942072103	0.948968839854186	0.988169196639905
Merged-chr1-170175051-4	chr1	170174547	170175547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-83.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	8.26344779788527	8.38810945222244	7.96511743405326	8.17006030367445	8.25926890748361	7.90011949456592	-0.139298533632819	0.560981299639703	0.865355332315314
Merged-chr2-24367599-4	chr2	24367088	24368088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-87.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.95051347238678	6.60902086250538	6.68468890246676	6.96682372537765	7.22377622623301	6.80802838747171	0.402026967254643	0.142567485029609	0.503998466557196
Merged-chr17-35049767-4	chr17	35049274	35050274	+	994.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033444)	promoter-TSS (NM_033444)	-469.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	7.14467247071738	6.86716551547368	7.12762023314758	7.31471797215392	7.65653588502616	7.60973198711161	0.724683993549029	0.0039572936006323	0.051506098220149
Merged-chr10-127566107-2	chr10	127565595	127566595	+	908.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 41 of 88)	intron (NM_008512, intron 41 of 88)	-31536.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.86122296781315	2.63084953842805	3.28693488914502	3.04815482688285	2.66405319267024	3.25391744048506	0.25092832635232	0.755954301676763	0.939495792549816
Merged-chr6-24707304-3	chr6	24706804	24707804	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25941.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	5.61059822489905	5.8420797236831	5.23376271096783	4.62768861942838	4.61740289804159	4.5354639409164	-2.12750192326915	1.59864245763914e-07	1.08058360369811e-05
Merged-chr4-130841139-4	chr4	130840581	130841581	+	796.354187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48544.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.93469822468326	4.64017938616476	4.76115353333926	4.24170253076142	4.11037407383797	4.368592248151	-0.646489796440245	0.21943269911064	0.613691719131423
Merged-chr10-81143290-2	chr10	81142790	81143790	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	7019.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.74915637624185	3.48731579756544	4.12453542598654	3.4731945733476	3.74591028397596	4.06483410472793	-0.0902918972737468	0.882690842137468	0.973231787904583
Merged-chr14-66811173-4	chr14	66810680	66811680	+	883.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	57420.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	2.68378423288614	2.54264216043703	2.94389339817424	2.43708338107285	2.74486085102689	2.72534187023967	-0.458359922086042	0.57109869243135	0.869376721278598
Merged-chr19-5599396-3	chr19	5598905	5599905	+	931.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2468.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	3.49613254796095	3.67927585445596	3.62106607796887	3.05363841346817	2.87632523202571	3.25882511495945	-2.40044450045167	0.000601656120222989	0.0121777189130417
Merged-chr15-68011382-4	chr15	68010897	68011897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	247459.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.6264050382245	4.83238927696081	4.49148018700769	4.34800726463847	4.31532220032669	4.79376193935822	-0.42098137362202	0.353534336868275	0.740736914917923
Merged-chr4-148045002-4	chr4	148044480	148045480	+	953.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027809, intron 4 of 12)	intron (NR_027809, intron 4 of 12)	3791.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	4.47650104104265	4.32392782119968	4.97163209747234	4.83995398216577	4.91498611549448	4.89991413080505	0.648088386356819	0.140846131706277	0.501450363202116
Merged-chr4-136893016-4	chr4	136892518	136893518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-104.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	6.66884014818419	6.5919303929626	6.95292286510867	6.94755775783622	6.97835399805227	6.91532256824884	0.32925152820975	0.201253006511392	0.590817080593818
Merged-chr1-172312353-4	chr1	172311856	172312856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-11.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	8.11735870812208	7.9095247187018	7.97303803057686	7.7861491193819	7.82523480263521	7.48787165162723	-0.411208562931335	0.0754826043958357	0.361732220616754
Merged-chr7-63822179-4	chr7	63821686	63822686	+	921.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94671.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.66105543284403	2.74745401745366	2.73992832484497	2.51041766031559	2.42279021701552	2.35803073782211	-1.74149341305725	0.036771539200089	1
Merged-chr17-8305454-2	chr17	8304954	8305954	+	605.333313	f1_balb.idr|f1_c57bl6.idr	intron (NR_073374, intron 1 of 4)	intron (NR_073374, intron 1 of 4)	-5634.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	3.86307340795288	3.68096419760523	4.19789902443713	4.37116190621099	4.24326470992362	4.3930174746138	1.19379821848118	0.0191832492146522	0.157208782391174
Merged-chr17-87246558-1	chr17	87246058	87247058	+	723.0	f1_balb.idr	Intergenic	Intergenic	19389.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	7.09201305822346	7.06335325137889	6.94260894460693	6.36074682611969	6.3384777924999	6.46063570611735	-1.03297902817898	4.4195555997614e-05	0.00142478910928596
Merged-chr2-73511206-3	chr2	73510707	73511707	+	958.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	RSINE1|SINE|B4	18280.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.82982784154614	5.47401317914554	5.74887894768881	5.85673517601164	5.86582320138626	5.73253069077653	0.24291903683358	0.447675712413668	0.806613123979916
Merged-chr11-117325736-4	chr11	117325260	117326260	+	973.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5955.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.1481365489816	4.72846623744864	4.89685393160993	5.12665044064663	4.62701143499626	4.88797282145154	-0.0999739123672248	0.812426579884268	0.955578304935189
Merged-chr2-68364679-3	chr2	68364196	68365196	+	673.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 8 of 17)	intron (NM_016866, intron 8 of 17)	107285.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	2.06133230659604	2.09933663114707	2.26629645980862	2.10351054932097	2.03042187373988	2.00942264507244	-0.705103048801405	0.441142390819503	1
Merged-chr11-51922548-3	chr11	51922077	51923077	+	786.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45054.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.27066626068432	7.39327070862099	7.30130138940417	7.35584169780768	7.52916231630938	7.38081164079531	0.153922288036062	0.502697168164994	0.836618716496446
Merged-chr11-55471780-2	chr11	55471280	55472280	+	832.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	2028.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	3.80163725351273	3.75350019725783	3.59013342446849	3.96411755336389	3.62477035754152	3.92419438209188	0.37822933096092	0.491099376766495	0.830387418199578
Merged-chr7-83645645-4	chr7	83645143	83646143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 18 of 18)	intron (NM_001360088, intron 18 of 18)	9852.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.1869011736784	6.29749071379048	6.42939847994865	6.23863028096599	6.09804992014667	6.69735580754427	0.0893815508423972	0.773402909017021	0.944067559391607
Merged-chr19-41969594-2	chr19	41969116	41970116	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 2 of 30)	intron (NM_028152, intron 2 of 30)	11520.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	4.12267648375258	4.10802987716388	3.82137145432149	3.58993970079225	3.61324102211909	3.94200269363964	-1.00416743450603	0.0652758280387436	0.333055622973251
Merged-chr6-71444349-4	chr6	71443853	71444853	+	893.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3716.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.47948862819756	5.37923109283687	6.1037270114939	5.7297638599607	5.82098955076655	5.76669911657878	0.169907511153382	0.639900337763773	0.898255496259518
Merged-chr14-21662597-3	chr14	21662091	21663091	+	764.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 15 of 16)	intron (NM_017479, intron 15 of 16)	51985.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	2.96391011146996	2.9704935792223	3.06006488884336	2.87011484775103	2.97950937955968	2.89406813562629	-0.370818194553573	0.586565920362308	0.875602825595287
Merged-chr7-79848210-4	chr7	79847711	79848711	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008486)	promoter-TSS (NM_008486)	-1.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	3.08811161677981	2.63485180590327	3.03507128132443	2.73143364028039	2.56017523781352	3.05090991178691	-0.68140848313601	0.394118022883644	0.77206906441863
Merged-chr16-21636346-4	chr16	21635854	21636854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	58311.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	7.57296645021088	7.87307367006164	7.75147751468502	7.70921705773244	7.9404469367808	7.88185560325264	0.157678082315132	0.493093525476986	0.831208279358962
Merged-chr11-11686211-4	chr11	11685707	11686707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001301868, exon 1 of 8)	5' UTR (NM_001301868, exon 1 of 8)	282.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	7.66929596497122	7.92123201142515	7.37261416810995	7.73395608385209	7.43030857101188	7.74487133952338	-0.0608708114527774	0.815298917931068	0.956370078970016
Merged-chr19-47168368-4	chr19	47167854	47168854	+	841.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10466.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.08458817482706	2.90771379187739	3.25994104259173	3.41763346974007	3.44367538764214	3.09355114696772	1.04016755952357	0.123789004067749	0.470898704816255
Merged-chr9-113931668-4	chr9	113931181	113932181	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001083319, exon 2 of 17)	exon (NM_001083319, exon 2 of 17)	747.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	6.61884096362617	6.59621932511628	6.68220429828385	6.65960246989167	6.51191396144263	6.66106972147832	-0.0356045421735648	0.889667206255497	0.97427586662772
Merged-chr4-151058094-4	chr4	151057607	151058607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009498)	promoter-TSS (NM_009498)	-154.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	8.37488416480723	8.70155865837016	8.25355983707541	8.28584658368976	8.33833041734324	8.04474704513066	-0.319644563416489	0.177327969066928	0.558255726686941
Merged-chr7-116334177-4	chr7	116333685	116334685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026533)	promoter-TSS (NM_026533)	5.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	8.05365677323767	8.22639778022838	7.85927502832988	8.00599844182371	7.93358363400791	7.89917219674479	-0.161310142485341	0.471448221631233	0.81999367601546
Merged-chr13-9764086-4	chr13	9763571	9764571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347476)	promoter-TSS (NM_001347476)	-261.0	NM_001347476	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	8.178932203441	8.05705306975191	7.82902056296602	8.31067977722881	8.09197848738675	7.87677107140051	0.105462596531284	0.66048483272313	0.905981809862142
Merged-chr11-69685404-4	chr11	69684888	69685888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011614)	TTS (NM_011614)	166.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	7.95715212503029	7.87465754330436	8.01338636164806	7.99683872134153	8.21332233017791	7.82648886582993	0.116765704807985	0.607495775814833	0.884581207370863
Merged-chr18-34512065-3	chr18	34511578	34512578	+	853.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5255.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	2.82442432392207	2.42228449168998	2.99424091691877	2.24507402662323	2.19868903449856	2.53817926090879	-2.98616097281462	0.00365889243393003	0.0487206898120727
Merged-chr5-21211037-2	chr5	21210537	21211537	+	746.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	24770.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.44878398963021	4.56931346216781	4.76517002430581	4.31350903009718	4.1181089007605	4.53065655443787	-0.70219338610863	0.124143087925482	0.471505936292233
Merged-chr7-4738951-2	chr7	4738444	4739444	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-1183.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	4.75002486502034	4.22083447956272	4.28664120265574	4.41199341045688	4.42446277629131	4.69138328122231	0.150441413807789	0.750956461212425	0.937674068369247
Merged-chr2-4969298-4	chr2	4968776	4969776	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-6846.0	NM_001311208	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	3.05661141143401	3.5884809377138	3.46901988110223	3.61723580138028	3.48083917478989	3.59381776035811	0.62274919991242	0.332938073531272	0.723927708416112
Merged-chr17-83729408-2	chr17	83728908	83729908	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	23245.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	3.74640359124739	3.75729575331554	3.93874027991936	3.94795088597726	3.8967388653222	4.05384233973136	0.477330725823512	0.349652174713412	0.737704147134326
Merged-chr17-10372434-6	chr17	10371924	10372924	+	982.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	47822.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.7555230298783	4.53201892992163	4.27826845353994	4.20942357301845	4.40143997949924	4.52523540829721	-0.413419908652967	0.369828482133755	0.754352114878
Merged-chr12-40637583-2	chr12	40637083	40638083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 6 of 52)	intron (NM_172803, intron 6 of 52)	191530.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	3.81454401277597	3.69647108898173	3.96254870206817	3.77990224547873	3.6807200699688	3.84007735045591	-0.192139257277068	0.716728979966201	0.926809750393356
Merged-chr9-107630790-1	chr9	107630290	107631290	+	722.0	f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	4552.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	4.39903194785486	4.62602673549607	4.99843740029076	4.70949982654197	4.59087685826473	5.35047826437786	0.512981339826116	0.285006405409181	0.68257469790491
Merged-chr3-69195948-2	chr3	69195452	69196452	+	814.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-26467.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.3776620579511	3.47088049172849	3.73625228418614	3.65186818503143	3.64061800226047	3.80503914621128	0.591967502249639	0.298770763827195	0.695485178809155
Merged-chr18-12974140-6	chr18	12973576	12974576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357396)	promoter-TSS (NM_001357396)	-384.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	8.12431943279162	8.31189551969763	7.76468861591134	7.93986119551955	8.20130597478981	7.76692589897932	-0.1486807650016	0.565759074479738	0.86688237163883
Merged-chr11-67559168-1	chr11	67558668	67559668	+	690.0	f0_balb.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	26170.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.24916324583717	2.97138947865486	3.27970615255858	3.79740917681616	3.31998200623592	3.1696381662572	1.1275153122553	0.0998568368744535	0.421428671264431
Merged-chr10-80032019-2	chr10	80031519	80032519	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001142701)	TTS (NM_001142701)	7640.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	3.28074068678934	3.55237691802511	3.15995093534426	3.2655611161908	3.02335040225025	3.51424220977625	-0.269725321146303	0.688811762704074	0.917235946766438
Merged-chr1-45904573-2	chr1	45904073	45905073	+	741.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21021.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.06086344313555	5.20119097156475	5.53462432777201	5.1287916725483	5.11379498006429	5.3482347473569	-0.152004691969165	0.683653620974016	0.915479407206029
Merged-chr14-27379089-2	chr14	27378589	27379589	+	765.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17700.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.90699524925484	6.87085712590592	6.98617094216291	6.82049298416783	6.7767719943997	6.60449019533667	-0.272729187888755	0.276000436695638	0.673374705661065
Merged-chr15-51865548-4	chr15	51865035	51866035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080635)	promoter-TSS (NM_080635)	-74.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	6.74757912320542	6.99853739286434	6.60512992037946	6.88171206582299	6.88447274842375	6.68152009093901	0.0334445506298043	0.900352915539621	0.976731943826834
Merged-chr10-128097351-3	chr10	128096875	128097875	+	970.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	CpG	4592.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	7.30584849839437	7.43735210916635	7.55611198845254	7.67558852789888	7.70135873024277	7.77297927793674	0.412886623787632	0.0664762956009275	0.336764663888096
Merged-chr13-59856556-2	chr13	59856070	59857070	+	764.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-33423.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.28427132118936	5.53051281001809	5.47761358547348	4.64114304547274	4.23440741892108	4.3843396833482	-2.28515024063576	5.43875281584285e-08	4.16710630111097e-06
Merged-chr14-120763724-2	chr14	120763224	120764224	+	616.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-147470.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	3.12598715651522	3.21344725618939	3.16462779999613	2.91409590525345	2.72817293942787	2.94109073892076	-1.5193450732409	0.0311607209609178	0.213823294550226
Merged-chr10-67137489-2	chr10	67136989	67137989	+	729.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 1 of 25)	intron (NM_207221, intron 1 of 25)	10231.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.66470511934608	3.69019027644761	3.55109478153486	3.52204100707211	3.53976976282783	3.92217649665956	0.0858279103020411	0.880429293140047	0.972540920690587
Merged-chr3-31446589-4	chr3	31446079	31447079	+	895.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136260.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.52196226688739	3.43579605213545	3.70504975331762	3.8680353022085	3.86690179926848	3.44001132792816	0.664822167759831	0.255541555773033	0.652642780011128
Merged-chr11-121789779-2	chr11	121789279	121790279	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40439.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	3.6150494530206	3.46973664044905	3.81468125640204	3.64326126848535	3.49643933454935	3.88287252317593	0.142240136535965	0.804405654258743	0.953645244705356
Merged-chr4-139429598-2	chr4	139429098	139430098	+	609.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001160319, exon 47 of 106)	exon (NM_001160319, exon 47 of 106)	48939.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	2.7876026463561	2.52408751960566	2.75222425674004	2.418640149988	2.6750443260514	2.76490559588414	-0.356436438258107	0.656781050767534	1
Merged-chr17-71214337-2	chr17	71213837	71214837	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	9683.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.48847669936668	5.60391600243404	5.65199152408047	5.59548386015479	5.67363192366728	5.63346536699859	0.106286003672551	0.737355284849505	0.933692850573981
Merged-chr1-58424099-4	chr1	58423616	58424616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-28.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	9.01433486719965	9.34737237140558	8.92541076024099	8.50215222616958	8.85922958403171	8.61410791756697	-0.604900796345085	0.00943215067188395	0.0965675258624616
Merged-chr8-60891537-3	chr8	60891023	60892023	+	713.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151662, intron 1 of 2)	intron (NR_151662, intron 1 of 2)	1130.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	2.81305140998639	3.13598645198872	3.18408614532791	2.92981244176927	3.01708454405843	2.77392646939012	-0.634960768185544	0.384961461782106	0.766074969021339
Merged-chr14-75018202-2	chr14	75017702	75018702	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	2175.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	3.99206084679174	3.92287468786106	4.29705557523152	4.63139440851102	4.92148223590161	4.27255160869249	1.51517107205727	0.00215463435126449	0.0326562504735911
Merged-chr9-120133630-4	chr9	120133102	120134102	+	825.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3168.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	3.34296090543926	3.20531850054732	3.17119963729301	3.21683277982395	3.11470057781937	3.35603237491105	-0.0763406673044684	0.903771661611357	0.977858102400597
Merged-chr4-117182709-4	chr4	117182223	117183223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-99.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.84619545744541	6.84666743435181	6.6270904501318	6.702453805709	6.632520183679	6.4513823197385	-0.280680314580772	0.284942740457525	0.682535905581946
Merged-chr6-87499999-4	chr6	87499494	87500494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-3667.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.32521403941719	7.20353778543363	6.89427421405168	7.03803647483239	7.31749328325354	7.27899863712082	0.0834179787451603	0.748006711182677	0.936880860325556
Merged-chr8-33929341-4	chr8	33928843	33929843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	520.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	7.2822523068028	7.00857309569041	7.12198790258237	8.01126084679068	7.65136975206858	7.65690702622336	0.941621314006407	0.000159229813325192	0.00416641330413919
Merged-chr17-83680433-4	chr17	83679941	83680941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-25722.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.81506382705579	5.76777639530434	5.80355575890174	5.87713974897535	6.3147673766474	6.26354875096019	0.649114642603746	0.035985923685753	0.233256737403142
Merged-chr13-56172054-3	chr13	56171583	56172583	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6802.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	3.80273135969736	4.01985259377875	3.85228779716064	3.68007781121511	3.32837129444544	3.55064018409789	-1.29108216499	0.0245097367526385	0.184549795264984
Merged-chr10-10654926-2	chr10	10654426	10655426	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3c|LINE|L1	48981.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.73202224587887	3.68792427745296	3.56810207212838	3.7096562908346	3.74862174079881	4.03880727571325	0.537596284816957	0.325626399314823	0.718159390122652
Merged-chr3-96503263-3	chr3	96502769	96503769	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21916.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	4.33809701408511	4.31440380723208	4.38897959303786	4.37895070017296	4.62507828570723	4.41273029620977	0.359437504877865	0.413663148368325	0.785359020041643
Merged-chr3-27208200-2	chr3	27207700	27208700	+	618.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	25196.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.57638399320478	4.39075976187582	4.79870972564469	4.37893161469412	4.31958514360862	4.60656485260958	-0.393958188251268	0.377109514874725	0.759616521190546
Merged-chr11-6560144-1	chr11	6559644	6560644	+	573.0	f0_balb.idr	promoter-TSS (NM_001190344)	promoter-TSS (NM_001190344)	-39.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	5.83673685368621	5.7146981633984	5.8539350483306	5.87741121610972	6.02320249928979	5.89093660007049	0.245061923521497	0.414415210696072	0.785805817831719
Merged-chr17-31294891-2	chr17	31294391	31295391	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-592.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	5.69070010171522	5.30890720579387	5.28997360303521	5.82506398401629	5.79164527872262	6.16642123480633	0.875151687436274	0.0121243849901479	0.115098341476419
Merged-chr5-114772063-4	chr5	114771567	114772567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1424.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	6.07624673147448	6.06065234968033	6.38003386418241	5.95688529003949	5.7932313752121	6.25642326994308	-0.288825044587416	0.358518750958268	0.74482243657584
Merged-chr11-75538119-3	chr11	75537660	75538660	+	787.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	6048.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	5.13394981467039	4.96724920293705	5.50204121961547	5.07267274241144	4.86916940456946	5.19345841579011	-0.344684424026562	0.381186284618882	0.763032822617589
Merged-chr8-120101410-4	chr8	120100904	120101904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133967)	promoter-TSS (NM_133967)	68.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	7.76424043153845	8.00263495177664	8.01445241510654	7.74669273335419	7.9870684557306	7.84134004059122	-0.0924784795224814	0.682888988573245	0.91523316791368
Merged-chr10-7923645-4	chr10	7923152	7924152	+	948.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	29413.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.56799356600369	4.43957471700884	4.14798221038835	4.25003545076825	4.37602373237327	4.65274845006411	0.0607472442687497	0.897225265479201	0.975963394862323
Merged-chr5-66114320-4	chr5	66113800	66114800	+	941.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16121.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.48816475068553	6.6412753925179	6.73281526014997	6.82905390803383	6.93207294172865	6.88027708942288	0.412719399490701	0.103915479356655	0.429838276142397
Merged-chr11-97837916-2	chr11	97837326	97838326	+	691.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2954.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	5.02420776629789	4.96497397333941	4.77562488902442	5.17244430128762	5.18749514436263	5.03503665377755	0.432959769568664	0.246232192324841	0.643326659772837
Merged-chr14-52446123-2	chr14	52445647	52446647	+	718.25	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-4246.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	3.57674231335667	3.36749117030274	3.59928247803449	2.88446720186822	2.80083695050544	2.86021428696637	-3.45053139820705	2.45271013078572e-05	0.000868816962802973
Merged-chr14-120357018-3	chr14	120356495	120357495	+	741.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	RMER5|LTR|ERV1	50543.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.71373248277199	3.23437255361396	3.68548365476683	3.90287430363559	3.60330467068004	3.95136119777337	0.879459764888804	0.147848726712357	0.513107343244259
Merged-chr11-29707750-7	chr11	29707261	29708261	+	796.3095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-10802.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	6.00002133949073	6.46147951851532	5.92824592904312	6.43265242638658	6.59187377853229	6.38756936570028	0.514887173726871	0.0967110984946311	0.414629899193181
Merged-chr5-100500796-4	chr5	100500290	100501290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-151.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	6.60650667404236	6.52344622838839	6.1963486902944	6.45975612000246	6.33658517267162	6.09786125366086	-0.245297021889649	0.404816018309231	0.779791650050306
Merged-chr8-39655648-2	chr8	39655152	39656152	+	671.625	f0_balb.idr|f0_c57.idr	Intergenic	Lx7|LINE|L1	-12974.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.73454405525172	2.54391154372592	2.84725267855686	2.95442906239512	2.64322947729176	3.3071578121539	1.37257954055553	0.0840955005979473	0.383736839141468
Merged-chr11-19925234-2	chr11	19924734	19925734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	CpG	792.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	8.88946677632629	9.14559183561655	8.51211180862357	8.63998048596046	8.6925521805025	8.30888499694931	-0.438197331756355	0.0851290990602137	0.386252608791229
Merged-chr11-113649565-4	chr11	113649094	113650094	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013581)	promoter-TSS (NM_013581)	65.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	6.1027946316734	6.40247919613495	6.274965402203	6.24339767643816	5.96098751333545	6.0832619027856	-0.285200740223831	0.333070079590431	0.723964294628694
Merged-chr10-61696058-3	chr10	61695557	61696557	+	960.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	471.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	6.07990276254417	6.16606165778471	6.07561753114096	6.11929294546936	5.93741895131963	6.19966588202175	-0.0497355064686334	0.863575833457402	0.968269312109804
Merged-chr15-99032282-7	chr15	99031797	99032797	+	916.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2406.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	5.74630853164929	5.39294617352106	5.50677069786394	5.32621753346593	5.57563607006476	5.67847052826719	-0.0523822451348722	0.87923366553544	0.972083703102674
Merged-chr1-36814741-2	chr1	36814241	36815241	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	35757.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	4.19349162582465	3.93982219704074	3.90416701497208	3.44911142268021	3.51804989258478	3.66716964009779	-1.68716035914537	0.00270205938675371	0.0388860803757606
Merged-chr9-50856964-4	chr9	50856467	50857467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	43.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	5.44811514432296	5.65203524279155	5.68371606956462	6.00117447550102	5.63328756228567	5.60904517178457	0.307716022154452	0.3562150701786	0.743117973232815
Merged-chr15-58622199-2	chr15	58621699	58622699	+	879.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	201228.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.97749943497464	4.61266561796444	4.49640019514419	4.5611921278917	4.9855583236464	4.65252024513325	0.0826883738407919	0.852972075780214	0.965595746053526
Merged-chr14-118137037-4	chr14	118136537	118137537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021434)	promoter-TSS (NM_021434)	-90.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	6.40878041149751	6.54483875804086	6.1668734317649	6.13465293145427	6.28765619178224	6.26970477950412	-0.264558807432171	0.354466055190334	0.74162462962729
Merged-chr6-84737143-4	chr6	84736637	84737637	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-143229.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.34254338776809	3.43301027005972	3.19671044920626	3.25766532064653	3.2400359442148	3.59760930009527	0.138399589911644	0.826041495871847	0.959063571361885
Merged-chr6-17408816-2	chr6	17408316	17409316	+	721.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-55141.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	3.16480700875762	3.08605844444522	3.35146676859604	3.81284901921341	3.69085762949698	3.69771908794394	2.12248370824494	0.000614483482928721	0.0123532113185632
Merged-chr17-45598031-4	chr17	45597548	45598548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	1555.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.77186047249387	5.09920960522618	5.4296887339431	5.68136964910723	5.34873998989239	5.68729655991774	0.206201563602442	0.588891487693582	0.876650937479947
Merged-chr17-57246959-2	chr17	57246459	57247459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030084, intron 1 of 16)	intron (NM_030084, intron 1 of 16)	511.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	5.08505461384801	5.15854568622038	5.18295615520322	5.32404193845175	5.46769890404368	5.46213809064776	0.560281420609407	0.102750608157882	0.427448179248844
Merged-chr11-106612181-2	chr11	106611681	106612681	+	783.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 1 of 11)	intron (NM_198292, intron 1 of 11)	749.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.9555119813401	5.9164067378056	6.18889171911789	6.20544483389758	6.06192177476646	5.84008980285636	0.0596356342843993	0.844927817784743	0.963760118842549
Merged-chr6-97496193-4	chr6	97495727	97496727	+	816.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-8407.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.82355233357151	2.74290003877742	2.99147763486905	2.53426058174464	2.47550347638528	2.83436215906	-1.30328328341958	0.10064581767151	0.423170146377512
Merged-chr5-3490565-4	chr5	3490063	3491063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-53270.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.73943374279412	7.16462300774736	7.02752095654031	6.63648542351285	6.818238925413	6.83773596494516	-0.344183467090418	0.19890892388294	0.587343866831168
Merged-chr6-31215236-3	chr6	31214743	31215743	+	804.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	3231.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.88143719401998	4.8189440687759	4.60642012339265	4.47307823882605	4.2869008961005	4.6324321566376	-0.778923413972334	0.0691054247075219	0.34395473619309
Merged-chr5-63970588-7	chr5	63970114	63971114	+	998.880981	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1717.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	5.79515870461602	5.77738813223898	5.59851325232259	5.98030955814836	5.86642128468613	6.3728657031882	0.609537552748526	0.0615477379380663	0.321848224926048
Merged-chr18-34931476-1	chr18	34930976	34931976	+	1000.0	f0_balb.idr	intron (NM_144866, intron 2 of 10)	CpG	527.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	9.33442849972884	9.51907647862767	9.12203953954485	9.22483556735203	9.56652260305117	9.35855752573135	0.0736302895017198	0.739406160534182	0.934242013601522
Merged-chr18-11691043-3	chr18	11690544	11691544	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 4 of 18)	RLTR13B1|LTR|ERVK	33695.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	3.94382286742211	4.19712193502895	4.37386651986371	5.73694880366296	6.18580856064751	6.06607511707934	4.28058810515378	1.3857863050541e-19	8.47856668168691e-17
Merged-chr12-99874837-3	chr12	99874340	99875340	+	893.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030172, intron 3 of 5)	intron (NM_030172, intron 3 of 5)	8602.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	3.40439225792501	3.14501187320615	3.29512917456106	3.68834830440691	3.44776020141244	3.36845718835593	0.860610107979211	0.16380921638769	0.537798828885102
Merged-chr5-53594540-1	chr5	53594040	53595040	+	913.1666869999999	f0_c57.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	4054.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	5.32978656135426	5.16565329346987	5.10614052094163	5.27659848169192	5.51092889631067	5.20612634782206	0.279296498709458	0.435050697826799	0.798753078814766
Merged-chr1-36691455-4	chr1	36690956	36691956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-31.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	6.34529259768328	6.30955437469003	6.32453303049868	6.50052343658812	6.2195834479158	6.32572869206432	0.0404692019008862	0.883416993797909	0.973362870329156
Merged-chr2-125802128-2	chr2	125801667	125802667	+	654.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19297.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	2.72174739808959	2.76825179989744	2.93467364929504	2.46973637843294	2.46610860281871	3.00641831009798	-0.729521058582793	0.380315978656237	0.762464628759352
Merged-chr7-25768867-2	chr7	25768367	25769367	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 12 of 19)	PB1D10|SINE|Alu	-14108.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	3.21768940382664	3.39214951999473	3.827053641218	3.48518252404208	3.53207382445063	3.80289876771765	0.398647418818221	0.525737911792412	0.849127238910141
Merged-chr12-4236515-4	chr12	4236017	4237017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001204912, exon 2 of 2)	exon (NM_001204912, exon 2 of 2)	2490.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	6.67631122903471	6.68362750975296	6.81359048041321	6.66564772069128	6.9770887486317	7.00967051808287	0.266116478221532	0.307951946275091	0.703957844660927
Merged-chr11-69060452-6	chr11	69059952	69060952	+	919.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028005, exon 1 of 1)	exon (NM_028005, exon 1 of 1)	677.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	7.1251768706817	7.34238610908025	7.41472912502533	7.28585048753105	7.50710980427707	7.66116016542248	0.287117962036619	0.246235633225381	0.643326659772837
Merged-chr14-121878474-4	chr14	121877982	121878982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	22.0	NR_131000	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	8.01992362061192	8.23170821832025	7.83141602872631	8.05038183226542	7.97183700286593	7.810794285516	-0.13206945847509	0.569884036160832	0.868910326260025
Merged-chr14-99044956-4	chr14	99044470	99045470	+	807.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175245, intron 1 of 2)	PB1D10|SINE|Alu	1166.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	4.39029828357555	4.30587226084928	4.40383010013741	4.54761708485827	4.83650692961398	4.51552981995008	0.714186951843892	0.100197278069967	0.422118658012372
Merged-chr7-75653875-3	chr7	75653390	75654390	+	637.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-194448.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.77473208772959	5.76257160212323	5.57224028550951	5.45899819447876	5.30737965395675	5.46004667021399	-0.583611237861854	0.0730412441694563	0.355125385348377
Merged-chr7-44997293-4	chr7	44996808	44997808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	271.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	5.82119266216254	6.3773532425424	6.53937948972329	5.92117500593499	6.19749024438922	6.30317788084689	-0.213279223466577	0.528306259062746	0.85053360857083
Merged-chr8-94181982-3	chr8	94181576	94182576	+	927.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	2987.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	3.21338805344999	3.15542035545902	3.14709207554748	3.17831986054713	2.93457142566841	3.16097385124721	-0.362273675818104	0.579633906047491	0.872572319921262
Merged-chr12-4230832-2	chr12	4230332	4231332	+	970.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361641, intron 2 of 5)	intron (NM_001361641, intron 2 of 5)	3133.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	3.38174844103541	3.76190307959818	3.60111580480065	3.46571849768583	3.48713924736047	3.72198710370836	-0.124727753157679	0.831799381479656	0.960487873555148
Merged-chr11-5261222-1	chr11	5260722	5261722	+	837.0	f0_c57.idr	intron (NM_032396, intron 1 of 8)	CpG	388.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	5.5864219322837	4.58912583357389	5.03962427319542	5.2030190797998	4.56924634402335	4.80386533479437	-0.54009186642788	0.270638540615504	0.667629387731657
Merged-chr2-136919558-1	chr2	136919058	136920058	+	546.0	f0_balb.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	20207.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	3.36072298067678	3.04273509173798	3.25237595191285	3.09085091100494	3.10588353716743	2.89887549606232	-0.80433396325831	0.240731140276291	0.637793066855662
Merged-chr3-28013541-3	chr3	28013003	28014003	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	29332.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.26193536119743	5.43708801901998	5.20800774100187	5.52187770941254	5.82061799351352	5.46703010938098	0.596346838185785	0.0855564561937513	0.387334498729472
Merged-chr11-69662755-4	chr11	69662264	69663264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	-115.0	NM_011900	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	8.31701099731788	8.24969944868356	8.19353980246711	8.1577236318418	8.56207563805971	8.20968990547413	0.102689967558362	0.652041107559732	0.902896807825606
Merged-chr15-101983264-2	chr15	101982764	101983764	+	791.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21078.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	4.67701540917379	5.02366312870297	5.1886886414738	4.77835074882412	4.81232470990355	5.22147321367928	-0.0655085825580569	0.875781243903969	0.97112175992166
Merged-chr9-66114498-4	chr9	66114000	66115000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10386.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	5.80734919855768	6.05179875361629	6.04074297447627	5.87255515570564	5.8387301735106	5.94352227518183	-0.153376166726242	0.609936626112467	0.885346570120127
Merged-chr10-12869414-4	chr10	12868900	12869900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7665.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	7.7274306871613	7.59334677142609	7.27065751419634	7.74129985818578	7.68001088328121	7.50743710707673	0.140594293090813	0.568269992360342	0.868531823304055
Merged-chr2-148687031-2	chr2	148686531	148687531	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355689, intron 3 of 5)	intron (NM_001355689, intron 3 of 5)	5911.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	5.38224813609141	5.78116853089775	5.63102024834083	5.54594356374494	5.67838308729782	5.69310373440956	0.056493682071657	0.865244022247016	0.968641183477245
Merged-chr7-41599241-4	chr7	41598755	41599755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34276.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	5.09749637010025	5.46194309499174	5.40329900490836	5.48464376221028	5.34777915182844	5.24713412547246	0.0746636959648235	0.833935721470453	0.961129638343139
Merged-chr2-157094086-3	chr2	157093563	157094563	+	990.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177439, intron 4 of 5)	intron (NM_001177439, intron 4 of 5)	7008.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	3.89718064752605	3.51344918769773	3.76042144721224	3.75795984344558	3.62662003913146	3.72724301314391	-0.101799091519899	0.854623753309812	0.965987623019113
Merged-chr2-167976224-2	chr2	167975724	167976724	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 8 of 8)	intron (NM_011201, intron 8 of 8)	34369.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	2.40865005628592	2.20246749092273	2.44974739489231	2.17525293153123	2.16718984491732	2.39841975041554	-0.736686219133583	0.400161801390106	1
Merged-chr19-53039247-2	chr19	53038747	53039747	+	741.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-593.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	4.39379914341305	4.61860250834856	4.88450906036768	4.30081040958274	4.76376606942588	4.31207706092571	-0.362101016613568	0.448289592681239	0.807187517914313
Merged-chr4-44756646-4	chr4	44756130	44757130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	71.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	8.05661424002302	8.34813394783258	8.12455280268815	8.08111853473931	8.24857395539123	8.11845283801163	-0.0441197624717187	0.840760496388755	0.962819298477451
Merged-chr6-122821406-1	chr6	122820906	122821906	+	549.0	f1_balb.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1222.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	5.29394399816431	5.23688225209562	5.24550603292399	5.54939385954238	5.50063015598222	5.17334068482466	0.333447605751406	0.340034550156736	0.72967866276074
Merged-chr7-121109535-2	chr7	121109035	121110035	+	957.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139310, intron 9 of 28)	(CAAAA)n|Simple_repeat|Simple_repeat	26097.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	3.14802017180522	3.0910090112813	2.91689744240184	3.09787642008156	2.83389153081675	3.39154039964438	0.281126757588306	0.694708362513097	0.919217788511748
Merged-chr14-31129716-2	chr14	31129216	31130216	+	731.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-786.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	4.27598591474893	4.51922637431044	4.33013942161043	4.437223188374	4.77874100464486	4.39893860879386	0.446876884914566	0.325159960392922	0.717970213571373
Merged-chr6-38905214-2	chr6	38904714	38905714	+	617.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13772.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.12501775953103	3.89872241484337	3.84111327784821	3.93101150502809	3.97935971776082	4.01240391523918	0.0214828525774129	0.966064678791049	0.992210797624133
Merged-chr7-27553906-2	chr7	27553406	27554406	+	746.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	616.0	NM_175107	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	5.30910080256736	4.89288433656963	5.41442147990474	5.41423771148588	5.36176291054867	5.44840405974144	0.380366084865285	0.302427825527787	0.69908919064663
Merged-chr4-88696629-4	chr4	88696126	88697126	+	979.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5358.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	3.11232000470251	3.02942911049122	3.15008543749743	2.80656960899501	2.96465367500708	2.92863553806175	-0.905363398923484	0.188122363442122	0.573548498361867
Merged-chr4-129618492-2	chr4	129617917	129618917	+	801.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025455)	TTS (NM_025455)	676.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	5.16422131359438	5.27590766790687	5.32685336739531	5.12330810785065	5.51363155640758	5.4485499818694	0.244518221872519	0.493340205045624	0.831208279358962
Merged-chr5-20860716-4	chr5	20860196	20861196	+	816.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	21428.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.86435314263679	3.78950805106576	3.84665637398576	3.79308514225386	3.52528889751195	3.76461050512185	-0.463618408277701	0.389030550925547	0.768867573000832
Merged-chr3-67557926-2	chr3	67557424	67558424	+	788.083374	f0_balb.idr|f0_c57.idr	Intergenic	Lx8|LINE|L1	-24844.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	6.35737583267279	5.98020402250656	5.86817588340447	6.94718346342334	7.14820828053151	6.58883174412867	1.32652950324998	2.48000965520637e-05	0.000878113376129412
Merged-chr5-138262270-4	chr5	138261759	138262759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153161, exon 6 of 11)	exon (NM_153161, exon 6 of 11)	-1786.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	5.2076838953635	5.38769932545489	5.53134628107231	5.10424313926612	5.20228746593175	5.21043631304602	-0.405253967006541	0.251621579447489	0.649115979262858
Merged-chr16-23228685-2	chr16	23228185	23229185	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	RMER2|LTR|ERV1	2664.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	2.82435314647013	3.02082761275058	2.93918656253936	2.86134365952346	2.76507010978376	3.28908125364316	0.253647138237971	0.728795586121061	0.930478966998914
Merged-chr16-94724421-4	chr16	94723836	94724836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112917.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	6.05942154718998	6.2083810817221	5.74594666534321	5.45720650274676	5.11345598400197	5.26252787627409	-1.38875301235724	5.22952167853749e-05	0.00164265020697526
Merged-chr17-57671811-2	chr17	57671311	57672311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97759.0	NM_001081653	620292.0	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	3.7587842372675	3.6665881351134	3.5716992327167	3.74776347979237	3.99913383713854	3.75396532998854	0.568507703097013	0.29624506638766	0.693022144754045
Merged-chr1-191182531-4	chr1	191182007	191183007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	CpG	826.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	8.42418228762419	8.55559354841025	7.96863938089547	8.21835496415453	8.37556478917249	7.91874465087414	-0.218409366289682	0.403383662856881	0.77875989555314
Merged-chr8-84988604-3	chr8	84988066	84989066	+	747.777771	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2029.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	3.51775299398158	3.50956502875813	3.67044218589304	3.63686943841329	3.4337715050547	3.78895462488687	0.196750440217048	0.730445041224941	0.930884711548651
Merged-chr11-21239145-6	chr11	21238653	21239653	+	974.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_139061, exon 1 of 23)	5' UTR (NM_139061, exon 1 of 23)	121.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	7.84845937291236	7.54047209115514	7.61737212021954	8.13361514679682	7.79006841608237	7.98347600063392	0.425638962021264	0.0740919102582775	0.358067195895583
Merged-chr1-15799902-3	chr1	15799590	15800590	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5556.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	3.96138590533285	4.23984845348321	4.16728615446233	3.61020093385632	3.46351692040701	3.58626517791656	-1.93010608216496	0.000497255718895869	0.0104536649144207
Merged-chr14-70598343-2	chr14	70597843	70598843	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194345, intron 1 of 16)	intron (NM_194345, intron 1 of 16)	1492.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	2.55181672096219	2.5498291586352	2.7469301193364	2.79477628470972	2.47468383008237	2.75970048504347	0.35876143304167	0.644944459011997	1
Merged-chr13-50417887-4	chr13	50417390	50418390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175401)	promoter-TSS (NM_175401)	26.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	5.91091128768625	6.00474140031991	6.06500473454291	6.22474804704983	6.29322141714184	5.93842605912015	0.309845740461633	0.295838879869663	0.692708934886082
Merged-chr2-155100867-4	chr2	155100397	155101397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040634)	promoter-TSS (NR_040634)	-818.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	5.98767440058369	5.28663485957921	6.16446116757699	6.67398501849653	6.94807256945719	6.44191348280856	1.40744002464714	0.000108122235366626	0.00302815044105896
Merged-chr12-73907872-4	chr12	73907356	73908356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010431)	promoter-TSS (NM_010431)	-11.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	7.76631197939946	8.10281221003861	7.7027245146518	7.93667964567292	7.87902508511203	7.7320385545003	-0.0297628112074377	0.900326360157892	0.976731943826834
Merged-chr12-110682050-3	chr12	110681544	110682544	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025488, intron 1 of 5)	intron (NM_025488, intron 1 of 5)	575.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	2.13200761763989	2.09811424085988	2.26438554393371	2.00019163772784	2.05865930032083	2.00847421563831	-1.0742670509775	0.246434776524105	1
Merged-chr9-24511296-2	chr9	24510796	24511796	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8156.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	5.44889106278504	5.79815872535773	5.52618149612826	5.49942793693576	5.34655987490584	5.50238924956997	-0.303488219758626	0.369915009652458	0.754390532662477
Merged-chr12-33147685-4	chr12	33147186	33148186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015602)	promoter-TSS (NR_015602)	0.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	7.66304006100825	8.04926242365275	7.38379132284298	7.59911811809938	7.64430586308615	7.33687555826124	-0.287104952788883	0.292223338651131	0.68951252554772
Merged-chr19-46478390-3	chr19	46477875	46478875	+	766.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-23273.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.31189408168909	5.31195033895861	5.54675678394731	4.91944672651133	4.527883979375	4.77720168644406	-1.38144777716641	0.00040181292572316	0.008816996287862
Merged-chr7-19849786-4	chr7	19849247	19850247	+	898.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2256.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	3.05047204774017	3.0026161409856	3.13045812628734	3.1624276820147	3.1180898191244	3.20215120704604	0.44275585455874	0.490855804623309	0.830181469396006
Merged-chr18-84086659-4	chr18	84086169	84087169	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081300)	promoter-TSS (NM_001081300)	-107.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	6.11263927706844	6.19412139177937	5.94707454331355	6.32380873089792	6.48815543198009	6.29798475488489	0.46980242632726	0.09823015565256	0.417784440377132
Merged-chr15-83012383-2	chr15	83011883	83012883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 3 of 5)	(GGAGA)n|Simple_repeat|Simple_repeat	10755.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.04671581789283	3.94635901332513	4.51917751023386	4.00688701281977	3.91811915225872	4.04522283775483	-0.562634304092349	0.278448797223353	0.675623815920472
Merged-chr10-119063583-4	chr10	119063102	119064102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13103.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	7.71288346323967	7.58386004547478	7.0550528378353	7.44185643547207	7.36433619112676	7.35200606809027	-0.154244027988208	0.565837436559773	0.86688237163883
Merged-chr5-5320346-4	chr5	5319856	5320856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54288.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.43963264981979	6.8236879086876	6.21260181580641	7.1176504334438	7.43693314733672	7.39654084627877	1.21446846072697	3.79514131703323e-05	0.0012557861944553
Merged-chr2-128128072-4	chr2	128127574	128128574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284410, intron 1 of 3)	CpG-8520	499.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	7.04799968760393	7.04451095462618	7.30010388602093	7.04289223122271	7.00131455907166	7.26973212831233	-0.0399937173602054	0.872875484392069	0.970324308510602
Merged-chr3-51183730-4	chr3	51183224	51184224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-40723.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.17895849346788	6.19677582203913	5.99904419221411	6.46198825027793	6.68851347443917	6.89519454868594	0.900991452321026	0.00171288311268209	0.0274298649037821
Merged-chr4-32555759-4	chr4	32555262	32556262	+	991.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 2 of 4)	L1MA9|LINE|L1	15900.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.22775845932283	6.20681586567294	6.11359843125537	5.47314499347885	5.4541442990959	5.67184188922455	-1.18109725473047	9.92193149149735e-05	0.00281673174870185
Merged-chr19-5931075-2	chr19	5930575	5931575	+	899.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-6259.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	7.8241367734947	7.56666956638535	7.31487673201278	7.47304667298943	7.57732431479689	7.10608209133701	-0.266261913466193	0.324847885893826	0.717755195025185
Merged-chr8-18936896-4	chr8	18936392	18937392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176951, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	13979.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	6.5166157924205	6.37970504589944	6.18001062629132	6.00335695718059	6.26861005278026	6.0617003596343	-0.415924472912771	0.155842604042824	0.525909534703951
Merged-chr7-27590219-2	chr7	27589719	27590719	+	952.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1333.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	2.44747443945427	2.52255722817816	2.59245328185074	2.58947233019152	2.61718979586731	2.90427089812382	1.05523593684069	0.177252978348533	1
Merged-chr11-54068268-6	chr11	54067772	54068772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	745.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	7.42745731810245	7.30629350708615	7.60590483265063	7.59561103501868	7.70961706624871	7.52907538129122	0.250959841834606	0.28035605653523	0.678217620115832
Merged-chr1-91046412-4	chr1	91045877	91046877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7067.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.01959563885474	5.84744907960742	5.7906170559475	5.6827925055007	5.85693033941113	5.82699787943267	-0.181894534546993	0.553322294613332	0.86224512118178
Merged-chr1-87230659-4	chr1	87230154	87231154	+	768.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023314, intron 6 of 6)	intron (NM_023314, intron 6 of 6)	16715.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	4.41903911150265	3.94368041864772	4.02077227604726	3.81492200104709	3.97427072254387	4.27279468958853	-0.348541023361747	0.512031292590914	0.841654532746362
Merged-chr11-23667089-3	chr11	23666585	23667585	+	842.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028304, intron 1 of 17)	intron (NM_028304, intron 1 of 17)	1109.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	6.19458394903446	6.13621659973819	5.76313344870308	6.25520197455932	6.18715169939088	6.16715498956654	0.246464838011671	0.412360060686163	0.784461927725322
Merged-chr14-36962608-4	chr14	36962096	36963096	+	936.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	6168.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	3.66435252829181	3.66195750557209	3.44244068084481	3.58901611562487	3.59621994134961	3.51443808391624	-0.108634436837692	0.848018760194245	0.964318271116593
Merged-chr11-116095760-4	chr11	116095241	116096241	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8746.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	6.25675712683365	5.94459778627957	6.03145590252294	5.79921439378721	6.51666895596888	6.34090888336082	0.292253500801096	0.385817948150409	0.766674506964127
Merged-chr5-88630242-3	chr5	88629754	88630754	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45326.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	7.13018537410994	7.48810055331906	7.42900271080359	7.33554206478501	7.64291507917995	7.20298061556665	0.087299196239658	0.739078848463678	0.934159689508642
Merged-chr13-43795090-2	chr13	43794541	43795541	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	RMER12C|LTR|ERVK	9929.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.71966422525775	4.60664008500323	4.35529798879726	4.70942599179125	4.76704561065482	4.68818013158364	0.341289062441795	0.417703899507543	0.788267850635573
Merged-chr3-16004075-3	chr3	16003570	16004570	+	926.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	intron (NM_001081687, intron 1 of 3)	2262.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	4.7514487858253	5.25507908673424	4.99978958036636	4.77843534670647	4.97444708279122	4.63500947067097	-0.455655186131135	0.276896168532264	0.674252251447813
Merged-chr7-74696534-1	chr7	74696034	74697034	+	610.0	f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-141754.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.91989679062967	3.26008384481318	2.99153329323757	3.3243000145917	3.11470296086727	3.41260460546822	0.903178330274425	0.186345995968496	0.570809808295781
Merged-chr1-151599056-4	chr1	151598560	151599560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	27687.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.57676722582731	7.58851700635994	7.27534372913325	7.41580455582637	7.59371256584112	7.52818769606085	0.0294410810288981	0.901079137489452	0.977068600768154
Merged-chr8-70673255-4	chr8	70672766	70673766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015816)	promoter-TSS (NM_015816)	35.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	7.80550216178141	8.14282557925739	7.77570757553477	7.90961140112183	8.11505569253798	7.75262852758135	0.0237456172135393	0.922448829454271	0.982603914806961
Merged-chr11-116168255-4	chr11	116167754	116168754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172571)	promoter-TSS (NM_172571)	-76.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	5.17340945949317	5.07916214911848	5.02110757106778	5.06901819475989	5.33507938423322	5.01342772222626	0.130564104746602	0.724659836245561	0.929455493022176
Merged-chr17-30963279-2	chr17	30962779	30963779	+	966.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 2 of 21)	intron (NM_177465, intron 2 of 21)	8596.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	2.11397226280451	2.01106354554885	2.24824370816652	1.97783873275491	1.94532822918259	2.12933976989278	-0.844255450909128	0.365495544503799	1
Merged-chr9-85330566-2	chr9	85330066	85331066	+	697.1999509999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3416.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.38011911931111	4.21455219775743	4.56090015814314	4.3153038247784	4.22188407798454	4.15289975002149	-0.400466559089471	0.386654171395743	0.767131316757601
Merged-chr5-114596419-1	chr5	114595919	114596919	+	558.0	f0_balb.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28168.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	4.66711540406395	4.72695796376076	4.53998603545832	4.31975231822151	4.37312728359296	4.83457567679861	-0.326139268210258	0.465888287401603	0.817254134547215
Merged-chr4-155694774-4	chr4	155694290	155695290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178699, exon 1 of 1)	exon (NM_178699, exon 1 of 1)	448.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	5.88193259877223	5.63821100604561	5.52873225106015	5.45005830931889	5.1123727393534	4.89353400237221	-0.998400618915572	0.00772019891850639	0.083861920575859
Merged-chr3-135418042-2	chr3	135417542	135418542	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	5391.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	3.04996232635666	3.05925179466309	3.07049491762702	3.16110345497692	3.1170879464204	3.20057338513954	0.433875807073496	0.498562462550831	0.833948453751387
Merged-chr2-160665239-2	chr2	160664739	160665739	+	629.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	(T)n|Simple_repeat|Simple_repeat	19342.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.5684535088342	4.641606558503	4.29234724184288	4.91256507939099	4.83925867616791	4.98180343643662	0.898147974688567	0.032894220597083	0.221016013197843
Merged-chr9-106223739-1	chr9	106223239	106224239	+	780.0	f1_balb.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	1141.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	5.49192133590781	5.44486802844498	5.25995948925158	5.5060908558138	5.43272215040695	5.38880515812965	0.0659152786827446	0.844171316754216	0.963721522987745
Merged-chr16-97463556-1	chr16	97463056	97464056	+	626.166687	f0_balb.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-650.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	6.50596016702825	6.26225978206293	6.25495802832521	6.33495525133916	6.47800231572271	6.60609506573815	0.200906324169086	0.472146431314486	0.8205191831757
Merged-chr12-77288703-4	chr12	77288221	77289221	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252614, intron 3 of 12)	intron (NM_001252614, intron 3 of 12)	49982.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	3.99032878649653	3.72694280540804	4.07274175410635	3.84008567284108	3.62210793628998	4.05057906472414	-0.291685611872851	0.59174378211531	0.877726471452175
Merged-chr17-24169597-4	chr17	24169097	24170097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	81.0	NM_001361532	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	9.1091582880471	9.18191718780013	9.1635229233122	9.20472677942213	9.51855224130802	9.08425937278846	0.184403437306027	0.390494082453369	0.76961112307546
Merged-chr1-180835840-4	chr1	180835313	180836313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-15338.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	6.52101530311787	6.63644410508866	6.57190218637292	6.20143133129897	6.53949132472175	6.5635047912593	-0.213782918288798	0.438550011554264	0.800615097962194
Merged-chr17-29432836-3	chr17	29432348	29433348	+	827.4111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-58197.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.87103814198592	6.59060355991101	6.22015290635053	7.49431684554339	7.55008193757517	7.16371454618849	1.23997286626502	2.81682905108936e-05	0.000977037715570072
Merged-chr15-62077746-2	chr15	62077249	62078249	+	782.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	38492.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.01474598809054	3.30543063875178	3.05882946736022	3.0105574172601	2.73513011920762	3.0115600629173	-1.00732617568041	0.157786959643012	0.529315325672301
Merged-chr2-50982918-4	chr2	50982428	50983428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73244.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.54740137487575	4.74516087618386	4.57090954331195	4.40970359101892	4.49381204556682	4.59660233376196	-0.317393226745814	0.452324275579745	0.809370729412253
Merged-chr10-80141439-4	chr10	80140931	80141931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	-844.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	7.17871018131309	6.92596389920169	7.04645323902496	6.85118182379012	6.75516745753933	6.57246694258727	-0.488912969506011	0.0572501231534578	0.308627680424549
Merged-chr3-89270537-4	chr3	89270037	89271037	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009057)	promoter-TSS (NM_009057)	33.0	NM_009057	19729.0	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	5.43321346588598	5.29284783861431	5.52020466786124	5.34360844983852	5.01152420782322	5.80441994053399	-0.00140789082772007	0.997140424509068	0.999338276935267
Merged-chr1-181840184-4	chr1	181839679	181840679	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133815, intron 1 of 13)	intron (NM_133815, intron 1 of 13)	2222.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	4.35709784964416	4.7664528229198	4.46775904894777	4.60637046469957	4.73183587041849	4.6613226990836	0.288451422634018	0.50568786905722	0.838177729332582
Merged-chr6-142751604-2	chr6	142751104	142752104	+	897.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41A2|LTR|ERV1	-5082.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	3.67042943977809	3.59842130807402	3.79986025443718	3.38337859616436	3.35780461042573	3.27766794289954	-1.28384746683564	0.0305200519670725	0.211256341741633
Merged-chr8-8649771-4	chr8	8649294	8650294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10979.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.25385549489567	3.42789500007954	3.35443830745889	3.04560238224262	2.88168320210124	3.14305300388574	-1.46210291012703	0.0288572081364361	0.203815514355027
Merged-chr1-87853240-4	chr1	87852811	87853811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	24.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	7.09302810753427	6.84164659155895	7.00452998068754	6.7709378620918	6.30319268733327	6.43332419145699	-0.730677910841191	0.00913488180005986	0.0945392095546493
Merged-chr10-67537600-6	chr10	67537099	67538099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010118)	promoter-TSS (NM_010118)	-270.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	7.87025215142179	8.10257814337385	7.80872351803253	8.00375328169894	8.20542989809481	7.49851934365576	0.0136262241052099	0.959717660502254	0.990242512723989
Merged-chr1-152888008-4	chr1	152887512	152888512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	14633.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.86269403975013	4.86206263679878	5.00790385109379	4.94485878882975	5.01082929441425	5.13786313336901	0.266915960670843	0.475843223319101	0.82218949187564
Merged-chr1-194992785-4	chr1	194992296	194993296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15837.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	6.29311216202388	6.4776992576237	6.32920468279629	6.68602623451889	6.67641031010743	6.75260899624572	0.529791338961801	0.04342096775874	0.261828529985451
Merged-chr5-102028959-1	chr5	102028459	102029459	+	1000.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	ORR1E|LTR|ERVL-MaLR	40962.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.45428721602246	5.37446797843269	5.44566437922012	5.17495112503279	5.38890898509481	5.35953735366804	-0.217482844347867	0.521925268147319	0.84736361149322
Merged-chr7-67308296-4	chr7	67307790	67308790	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	64568.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.19744674451213	4.32876302312375	4.04155508910449	4.24737920928849	4.28420511176972	4.39040331947428	0.276109900565177	0.553454071602973	0.862251545920931
Merged-chr11-100356252-4	chr11	100355764	100356764	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-123.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	6.72499028500851	6.93865390323209	6.77983640678723	6.41616102953721	6.84393034541267	6.59614402679418	-0.282428534519479	0.305171276282154	0.701455567869764
Merged-chr18-6107971-4	chr18	6107459	6108459	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	28139.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	4.07824364521656	4.24976730202237	4.1737959412181	3.98177205119362	3.96857217168101	4.103511412302	-0.452459864852667	0.346448693827729	0.734677492075457
Merged-chr7-88255069-4	chr7	88254581	88255581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-23004.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.57312650613693	5.71814242931567	5.79907855728668	5.6487730840858	6.12278129620925	5.95583101523158	0.420853257192017	0.19717291734783	0.58511894383854
Merged-chr9-116134843-4	chr9	116134303	116135303	+	891.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	B3A|SINE|B2	40560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.44722356449669	5.08568110978103	5.15977480252962	4.50283501382665	4.41561626502267	4.4471417021005	-1.80286822888623	1.16037683905081e-05	0.000454579265648493
Merged-chr6-94283891-4	chr6	94283318	94284318	+	932.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	99.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	4.51654101164954	4.65210805058987	4.79412782352181	3.73823161004703	3.56359554600842	3.82722407755464	-2.92633586618045	6.2746933883052e-08	4.69813819753622e-06
Merged-chr1-191070433-4	chr1	191069881	191070881	+	903.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	7360.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	6.56066661665569	6.30809377520113	6.42705501420401	7.56594711327007	7.95915322103816	7.45788237311124	1.89490459973674	2.55080491784601e-12	4.554664712535e-10
Merged-chr2-73548733-4	chr2	73548180	73549180	+	994.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19193.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.24213164371426	4.02601914750802	4.66510466241741	4.33846970961806	4.11589429974156	4.11180340097461	-0.360963581926423	0.475398064457285	0.821929811663097
Merged-chr19-37548178-3	chr19	37547684	37548684	+	912.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2234.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.73482533291658	5.71127610398432	5.81443147802457	5.98038640013087	5.75277953364891	6.01573450910201	0.290652039563604	0.344023658379472	0.732785187549638
Merged-chr4-147235617-2	chr4	147235117	147236117	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	Lx8|LINE|L1	59751.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	3.22248165495865	3.30099313352985	3.1288852637181	3.1495357782633	3.17947444743178	3.58108586346104	0.355080460532106	0.585288598023779	0.87495182739014
Merged-chr1-171682137-6	chr1	171681676	171682676	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	184.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	6.51353037908902	6.89816728069491	6.92140753655121	7.14276122181913	7.27906267306912	6.87879025834208	0.507795307537538	0.0653838900077284	0.333402544414945
Merged-chr3-145738153-4	chr3	145737674	145738674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20518.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	4.43063515506238	4.7142901226356	4.71727592351967	4.66500777820075	4.81999137100109	4.30368018149332	0.00545409247841205	0.990341386948953	0.997824350058709
Merged-chr1-64753315-4	chr1	64752821	64753821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15571.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	5.63752979151548	6.14345701427384	5.65564090200052	5.88929123977206	6.20562534572774	5.82793981029808	0.262211818234854	0.445884842262075	0.805432049659428
Merged-chr4-145268941-2	chr4	145268441	145269441	+	620.299988	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009401)	TTS (NM_009401)	-22071.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.38799762314095	4.53280068359782	4.67247894345341	4.08100322092727	4.58393849663746	4.28137729278064	-0.473372768647022	0.320726446101626	0.714532129212091
Merged-chr18-68052917-4	chr18	68052383	68053383	+	860.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	119710.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.14492007876427	3.05870891633909	3.0140122205526	2.77913659249347	2.72323183468399	3.08629937228942	-1.02222479410558	0.155471662670687	0.525159710522295
Merged-chr10-96732202-4	chr10	96731686	96732686	+	946.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115185.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.3186380022311	4.19318305674131	4.34037934477706	4.37980334735068	4.03493002668596	4.36453759150537	-0.0597217844231995	0.89898226198141	0.976432549466174
Merged-chr17-50410084-4	chr17	50409587	50410587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99460.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.26130489392099	3.89133237831687	4.08084468024002	4.38745845745776	3.50822198887626	3.60897272134104	-0.523520095955467	0.409006142517648	0.782473112145764
Merged-chr17-42855427-2	chr17	42854874	42855874	+	764.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	21050.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.67835103153528	3.8248890290963	3.70977444438186	3.9987751097998	3.77349378942493	3.72687364211731	0.318094950743879	0.551131478860743	0.860993840889537
Merged-chr3-75275488-2	chr3	75274988	75275988	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-5410.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	2.3101035626518	2.27604593774121	2.49363268589443	2.37035218815221	2.13828557357177	2.50578290565985	-0.112670729074299	0.896717001311059	1
Merged-chr10-81070664-2	chr10	81070164	81071164	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022653, intron 1 of 12)	B3A|SINE|B2	581.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	5.01453467955184	4.88046586034789	4.77101632108862	4.55451654868957	4.55194842314046	4.75967340326042	-0.650360907346655	0.10673421029674	0.436012576482454
Merged-chr10-80264846-4	chr10	80264350	80265350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122605)	promoter-TSS (NM_001122605)	-141.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	6.49984928698146	6.13928540801244	6.18075474880281	6.45654276603622	6.36387291735824	6.36358743681403	0.175114036249007	0.540274901299057	0.85632302227606
Merged-chr12-85704783-4	chr12	85704307	85705307	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18087.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	7.53407813556487	7.43515489940156	7.56981866579793	7.47162308079532	7.64551697389766	7.52974573559875	0.0621359499786213	0.781999034873706	0.94634558043998
Merged-chr14-21502008-2	chr14	21501508	21502508	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	intron (NM_017479, intron 1 of 16)	2223.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	3.35991839449751	3.24473285960301	3.60000046771087	3.18374395562516	3.25488158303197	3.57015766230792	-0.244068036634363	0.699281950223561	0.920558737649758
Merged-chr9-13296622-4	chr9	13296129	13297129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49673.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	6.63687723789607	6.52365629597176	6.28129639527668	6.48738335475345	6.32476196101329	6.56608163139824	-0.0682537327675301	0.806707415235058	0.954313608673529
Merged-chr9-103336696-4	chr9	103336178	103337178	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 19 of 27)	Tigger1|DNA|TcMar-Tigger	28301.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	5.31521543765983	5.27161585467578	5.25302237963782	5.26327740587153	5.68794666025881	5.66395083876325	0.528537960817107	0.131394389178135	0.484600165539392
Merged-chr7-128053305-2	chr7	128052805	128053805	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4c|LINE|L1	-9335.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	3.64281178229627	3.16556386941836	3.34371694998597	3.51656864967744	3.18910554979274	3.41613155139109	-0.0913138720341071	0.887484058166365	0.973836995667151
Merged-chr13-98959982-1	chr13	98959482	98960482	+	573.0	f0_c57.idr	Intergenic	Lx|LINE|L1	24583.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	3.52896306963777	3.31795928001186	3.5401784696094	4.25090323951347	4.50087165930775	4.87261456301259	3.62799345608234	8.09757645425722e-09	7.50315302456386e-07
Merged-chr13-55067436-4	chr13	55066983	55067983	+	759.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_121592, intron 6 of 13)	L1M2|LINE|L1	26923.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	4.09461157837375	3.88075813435061	3.72870377456977	4.23531844060289	4.04834842653602	4.29513953811205	0.793330966257891	0.122921027897076	0.469100941508007
Merged-chr17-6782169-4	chr17	6781651	6782651	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	629.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.92055122114939	8.44436652232503	7.76644915744972	7.86261298198175	8.15741925845948	7.66472811600649	-0.237629804875961	0.401059077059894	0.777158973264623
Merged-chr8-22192870-4	chr8	22192354	22193354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027338)	promoter-TSS (NM_027338)	-6.0	NM_027338	70160.0	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	6.51584938109202	6.51475714866288	6.45881576601483	6.30543243056182	6.22789796095067	6.35053020449746	-0.340528620528485	0.200135526351428	0.589002825191866
Merged-chr13-97559091-4	chr13	97558576	97559576	+	946.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-924.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	6.09195557536547	6.37911900002435	6.16347962571681	6.08667876749122	6.10940777234656	6.07081793588714	-0.222114842846656	0.440762651473112	0.801967806487315
Merged-chr2-126932648-2	chr2	126932156	126933156	+	811.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	579.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	7.19209978706323	7.09258441646426	7.23136171406	7.5343945820994	7.71910929587969	7.45523744742223	0.606096145335398	0.00946836809474676	0.0967629541178689
Merged-chr15-81801754-2	chr15	81801254	81802254	+	560.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	859.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	5.1594060813139	5.03704229956097	5.18794114274916	5.05484578004106	4.84036489059384	4.74410641374743	-0.508018243018214	0.181641414547408	0.564123050256684
Merged-chr16-18251185-2	chr16	18250685	18251685	+	872.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001080999, exon 5 of 12)	exon (NM_001080999, exon 5 of 12)	2302.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	2.64501776062399	2.89513407986283	3.13163512717506	2.97005275951153	3.03805385210288	3.14761994785545	0.70551650168065	0.335823920515583	0.725949204464841
Merged-chr19-47463923-8	chr19	47463353	47464353	+	926.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	558.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.98719883721371	7.04398539583595	6.36677969063918	6.51536994578748	6.00801099947567	5.99166042621474	-1.03316446460443	0.00205973258576412	0.0316561191348838
Merged-chr4-53265540-3	chr4	53265039	53266039	+	845.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033140)	promoter-TSS (NR_033140)	-47.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.03394644573887	2.95667466611265	3.27636079114821	3.06262738503672	3.07917926614289	3.12667352081067	0.000278265198485519	0.999664777288513	0.999920050950963
Merged-chr18-4234487-4	chr18	4233993	4234993	+	894.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	68661.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.18429196922057	3.12986969772143	3.2331317058119	3.12404987633201	3.09036858176358	3.24824434809143	-0.12709997002441	0.840958774634051	0.962832831784718
Merged-chr2-164803607-4	chr2	164803123	164804123	+	908.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1258.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	5.88656970949247	5.65213149720062	5.70493303285634	5.77048033117095	5.79725449816215	5.79294521233292	0.0591065537354396	0.84830738199585	0.964356989789491
Merged-chr5-124474984-2	chr5	124474484	124475484	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	3251.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	5.57957724727457	5.3601166346585	4.7776345734721	5.44662917801214	5.38443916057985	5.46352537795691	0.260556412132836	0.516733256474635	0.844297183847098
Merged-chr11-115630630-3	chr11	115630132	115631132	+	860.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2337.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.84144793029408	6.74982249099072	6.71002555142334	7.06063430839207	7.30226183882201	7.23320521121449	0.661174208097615	0.00723628859526174	0.0800474742667561
Merged-chr7-39545021-4	chr7	39544555	39545555	+	932.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27289.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	5.81870215719234	6.16716738110116	6.3748907115399	6.49943094586478	6.33261528368993	6.4874654809487	0.51150228836527	0.091859883880243	0.403690568179321
Merged-chr7-127392503-6	chr7	127392115	127393115	+	844.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198011, intron 2 of 2)	intron (NM_198011, intron 2 of 2)	1006.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	4.86960523506968	4.55642759866831	4.72238616105284	4.47731648566159	4.57121035615674	4.86093047934231	-0.200390942802529	0.638157531428529	0.897380718500389
Merged-chr6-94509034-1	chr6	94508534	94509534	+	579.0	f0_balb.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	8720.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	5.90373742596409	6.23639483556548	5.76202283006017	5.06722688536939	5.55880400668767	5.21593851462842	-1.25277698562766	0.000703966118854678	0.0137235557934922
Merged-chr18-5819898-4	chr18	5819387	5820387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227240.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.26407202652283	5.28662666161707	5.68050680352473	5.84377212986763	5.80004808105736	5.49343514516546	0.59910590549689	0.0846528574496389	0.385367250114053
Merged-chr17-74396878-2	chr17	74396378	74397378	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252478, intron 1 of 13)	B3|SINE|B2	1270.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	3.42166136424503	3.11546985479378	3.03574030046422	3.35032814389518	3.44451942874893	3.46594649812852	0.839511533659216	0.198195418671618	0.586445873078056
Merged-chr2-124710325-4	chr2	124709805	124710805	+	966.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	56724.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.29579615922197	7.52294673181848	7.62686955344173	7.74157515402161	7.85120011497006	7.68358351492365	0.405997515805455	0.0803020177170929	0.374965206495505
Merged-chr4-128728610-4	chr4	128728100	128729100	+	954.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1029.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.61844592440743	7.74836569128858	7.59361047235112	7.95814200345811	8.22679936641934	7.86446043862949	0.536347753101693	0.0202161771968508	0.16258918153833
Merged-chr4-34270053-3	chr4	34269517	34270517	+	572.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219950.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	3.7119063054347	4.01066231183628	4.3008278029884	3.97182918163839	3.83355467285494	4.02056665479073	-0.242188957467553	0.651055710793367	0.902735752871093
Merged-chr3-27446208-2	chr3	27445708	27446708	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	74857.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	2.50465462586705	2.61668157818283	2.71240309175202	2.3280206847528	2.60904240200887	2.47397643822579	-0.771283983640656	0.351916267469869	1
Merged-chr9-59656411-4	chr9	59655898	59656898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011099)	promoter-TSS (NM_011099)	30.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	6.86071648763091	7.12092313609747	7.21693172524114	7.00720895790975	7.03079246540594	6.98843570844898	-0.0904466135372393	0.717860978729992	0.927216085145081
Merged-chr19-7057860-4	chr19	7057346	7058346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1078.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	5.25745834165526	4.84598035097604	5.39715546831168	5.14321858850686	5.16487742883939	5.22044881988524	-0.00585997844643292	0.987794159932575	0.997233411338816
Merged-chr1-37013181-4	chr1	37012656	37013656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73629.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.30088953039896	4.28446018375966	4.07175319146914	3.94309352907308	4.00025914389069	4.27863265625919	-0.440785382261464	0.366245066967073	0.751283584197618
Merged-chr1-43462886-4	chr1	43462400	43463400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	17149.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.42823479284831	6.68369610197993	6.23289319038242	6.52489248561091	6.56664333874653	6.29358984105268	0.00379203042567611	0.989552567779676	0.997611022725407
Merged-chr19-4144602-2	chr19	4144102	4145102	+	628.666687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-4061.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	6.85297572835724	6.5735541510255	6.85121133616479	6.50241905506058	6.6458218346738	7.09062470499663	-0.000567594423371122	0.998452062185603	0.999665481732462
Merged-chr8-11103952-4	chr8	11103438	11104438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95508.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.72774808277991	5.85630815331796	5.45424511693524	4.94646841866001	4.84701241143682	4.80683727650337	-1.67810702197409	4.27381790569751e-06	0.000192954878077742
Merged-chr4-16196839-4	chr4	16196339	16197339	+	920.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	32729.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	4.22169999493394	4.62017780007626	4.3968929672129	4.89610770770801	4.6767437253046	5.00550627973928	1.02348473912981	0.0204717565079048	0.163958376656784
Merged-chr19-12467677-4	chr19	12467275	12468275	+	843.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6996.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.57020681100751	4.60157594418902	5.2340169272286	4.29538464150911	4.46708460536448	4.44482634045173	-1.01046559886817	0.0318172937238138	0.216312883092663
Merged-chr7-35027196-4	chr7	35026709	35027709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	29357.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.39030844515158	7.48699318196808	7.42621199699939	7.50433285087547	7.52286890796402	7.20864322550459	-0.0113340447706229	0.961675470667154	0.990660492306069
Merged-chr5-145185371-4	chr5	145184937	145185937	+	693.020813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020582, intron 2 of 3)	RLTR11B|LTR|ERVK	6155.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	3.75904363994104	3.95139781015458	4.39375004676744	3.95234905069605	3.99734097908275	4.25938327487966	0.0552979302463147	0.91808144891051	0.981747877135909
Merged-chr11-75154357-4	chr11	75153872	75154872	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	13780.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	6.72827754184961	6.52820459121395	6.49131249322496	6.61040047221068	6.53314015117732	6.20936472783134	-0.190175481313959	0.498959097048161	0.834166852012946
Merged-chr11-109413288-4	chr11	109412775	109413775	+	790.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-12671.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.93733685714692	4.59082240977814	4.09717667603965	4.36252589790069	3.9610065058639	4.06181217279283	-1.17876353986472	0.0262124470345143	0.19225079707782
Merged-chr9-121374606-4	chr9	121374105	121375105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	7647.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	3.99258750004681	3.91627836083768	4.03456987387359	3.9940124420092	3.80524063734747	4.00826923899314	-0.142063472351513	0.776717167134886	0.944892922631445
Merged-chr4-136124748-4	chr4	136124269	136125269	+	907.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A4|LTR|ERVK	-19053.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	5.67727335211206	5.1182213792162	5.29572442588775	6.06821312430464	5.87641977639342	5.69524172014678	0.92368698136751	0.0103621743574779	0.103012640852691
Merged-chr6-91686725-2	chr6	91686225	91687225	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	2658.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	4.7495977928211	4.36826698734505	4.40750852575935	4.08994233046984	4.45487187500297	4.55850697005297	-0.361210965667042	0.446543232522968	0.805986318693516
Merged-chr15-62127992-4	chr15	62127501	62128501	+	868.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88744.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	4.56479716635792	4.76595116349025	4.42043610930554	4.71397450220811	4.48900178360564	4.19547029397423	-0.263206217188217	0.568173972681128	0.868528648409077
Merged-chr18-36687906-1	chr18	36687406	36688406	+	742.0	f0_balb.idr	intron (NM_172831, intron 9 of 12)	URR1B|DNA|hAT-Charlie	8019.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	2.7674452307746	3.29753531038638	2.9831790720895	2.51736054783756	2.40361757949931	2.74967946609839	-2.90128038669192	0.00161358402598708	0.026202790717083
Merged-chr17-34187591-6	chr17	34187085	34188085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	29.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	7.45749016031289	7.81575542536695	7.79079557447434	7.93713010357217	8.35717912484867	7.95149823423208	0.580136981321838	0.0217048872901279	0.170494882391814
Merged-chr7-19764134-4	chr7	19763676	19764676	+	906.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_020486, exon 8 of 15)	exon (NM_020486, exon 8 of 15)	6356.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	2.89216821310807	2.78342828234181	3.11000916619202	3.03487135817802	2.84836549529579	3.01026892646167	0.165641929559139	0.812962881562404	0.955850910466599
Merged-chr4-125099755-3	chr4	125099229	125100229	+	868.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151472, intron 4 of 7)	intron (NR_151472, intron 4 of 7)	14595.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	3.78522890691569	3.44699377363135	3.46845302932489	3.65226347649298	3.58144535309563	3.75535659804586	0.27370576647016	0.634186547676683	0.896306748317281
Merged-chr17-31109411-1	chr17	31108911	31109911	+	1000.0	f1_balb.idr	intron (NM_009593, intron 10 of 14)	intron (NM_009593, intron 10 of 14)	20200.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.58881515115742	3.43645808648366	4.28765020603395	3.32398626805766	3.18744663242429	3.62482201783769	-1.49941012530681	0.0259585066394283	0.191078858851163
Merged-chr8-71291059-4	chr8	71290568	71291568	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	18354.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.1783980688787	6.33172837360666	6.20373972274082	5.36772592691068	5.64696685942177	5.8444525778144	-1.08151533516945	0.000607710659529098	0.0122607981796892
Merged-chr8-13107407-2	chr8	13106907	13107907	+	782.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_146207, intron 2 of 19)	RSINE1|SINE|B4	1686.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	2.2165167644137	2.36630636777355	2.39038671646964	2.44138183876971	2.26056401455414	2.5899526120998	0.683946684992267	0.419361904555994	1
Merged-chr5-101996242-1	chr5	101995742	101996742	+	770.0	f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	73679.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.87174075011552	5.16124923524386	4.86068009132665	5.3291606477455	5.63794847178413	5.18920151892491	0.876671268707969	0.0223595862998497	0.173699603850051
Merged-chr12-85475137-4	chr12	85474650	85475650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010234, exon 2 of 4)	exon (NM_010234, exon 2 of 4)	1260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.74085508657106	6.78724397472829	6.66787614049121	6.36633066728067	6.44299919588129	6.50659830767619	-0.477145486052336	0.064094394675667	0.329862519040475
Merged-chr16-87455122-5	chr16	87454664	87455664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024258, intron 1 of 17)	CpG	179.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	8.37937186585262	8.49931298452197	8.15256937877856	8.24721858618833	8.24505163934597	8.13922760426262	-0.201386837465376	0.354247724468578	0.741447482268431
Merged-chr17-65716226-2	chr17	65715726	65716726	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 3 of 6)	Lx9|LINE|L1	56526.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	3.2371968187583	3.24127050931265	3.56008153526321	3.24064648313906	3.39854270983917	3.2534949343522	-0.170648888645244	0.785374543530473	0.947890183314723
Merged-chr16-36711480-4	chr16	36710988	36711988	+	992.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	17510.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	8.60882408572769	9.06675802341268	8.12917768313277	8.45839986338277	8.84221638101913	8.15534331191716	-0.197947525961854	0.524366945670078	0.848666791348536
Merged-chr14-54449163-4	chr14	54448698	54449698	+	944.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14949.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	2.79439979273995	2.56252038878013	2.82342227917455	2.78414154421923	2.89945597937135	2.57609410814579	0.182652921993331	0.814135209366349	1
Merged-chr8-25010421-2	chr8	25009921	25010921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	6501.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	6.38419203083732	6.48449422634296	6.56949492516241	6.83418800163191	6.86818835864341	6.86245812282	0.59847631427777	0.0182131516699327	0.152062979452967
Merged-chr10-68251466-1	chr10	68250966	68251966	+	958.0	f1_balb.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	27260.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	3.40595890208767	3.29268766927859	3.4174828864901	3.51320371612041	3.56351985785718	3.64805957609521	0.757388177956127	0.190152193533613	0.576299386028668
Merged-chr7-30729538-4	chr7	30729053	30730053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027215)	promoter-TSS (NM_027215)	-19.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	6.75451966996116	6.8890084578527	6.81300285480087	6.87783069442395	6.75095763558209	6.50395422137775	-0.144814027207154	0.580630625421893	0.87291295065866
Merged-chr12-38788785-4	chr12	38788279	38789279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	5068.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	6.13864473576247	5.93555420911628	5.72028047318985	5.70072985838368	5.74635344749186	5.55320393852735	-0.493951294021869	0.123791441557912	0.470898704816255
Merged-chr7-4134323-4	chr7	4133834	4134834	+	815.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001305822, exon 14 of 14)	3' UTR (NM_001305822, exon 14 of 14)	2592.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	4.61930759286094	4.82240815211465	4.89613591760747	4.90100060942711	4.453043321165	4.65904359782661	-0.232232795367971	0.585337673545533	0.874958242973642
Merged-chr5-41525680-4	chr5	41525185	41526185	+	959.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	182006.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.70728028490184	4.78050392619104	4.92629790431124	6.32495877597627	6.51483445036096	6.13003793134896	2.96351941149304	1.60210362865316e-17	7.24499123548761e-15
Merged-chr4-132307608-2	chr4	132307108	132308108	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-1070.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	3.55930253924339	3.38431889337347	3.61066023868427	3.71619222027824	3.72457251791423	3.92781200745168	0.93528825266874	0.0939406897194853	0.408306357614863
Merged-chr3-94838261-4	chr3	94837763	94838763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165948, intron 1 of 18)	CpG	696.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	6.86119869380113	7.12893273012558	7.28211858431017	7.36282996792745	7.45392833477348	7.4250679979458	0.476747356746241	0.0540562363616948	0.298289761601161
Merged-chr17-33782011-5	chr17	33781470	33782470	+	889.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020581)	promoter-TSS (NM_020581)	-395.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	6.19338435634385	5.77293323043806	6.14191322761353	5.48651187868224	5.35906806034569	5.80568494175797	-0.894761291017068	0.00856277065227817	0.0904061693230253
Merged-chr10-117819891-2	chr10	117819391	117820391	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	26083.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.05895554200833	6.11329680760208	6.29563862701728	5.9941684375001	6.03554138132373	6.33655625996981	-0.0537479139550706	0.856273243290776	0.966439022119812
Merged-chr6-29248616-3	chr6	29248140	29249140	+	813.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23848.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	3.54645614677491	3.10978690256861	3.09555839973712	3.24489661319863	3.02279650318267	3.28864281191658	-0.354111957210142	0.601740882322818	0.882067073080069
Merged-chr18-32378348-4	chr18	32377857	32378857	+	863.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045403)	promoter-TSS (NR_045403)	-73.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.38497827315083	5.63299231236798	5.44032241051566	5.50107689759566	5.35970767695481	5.14210024430253	-0.279167577804833	0.423849232008147	0.792272050905538
Merged-chr12-40017178-4	chr12	40016667	40017667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20209.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	5.5941065592876	6.1005070692755	5.65888394731998	5.71195079217494	5.59009373203161	5.39083647936285	-0.432971497239855	0.216131569185192	0.609553034390023
Merged-chr2-26492593-2	chr2	26492093	26493093	+	739.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	11229.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	5.2556770240081	4.77199939876458	4.946461841692	5.08919806472821	4.84513779068182	5.0117702239645	-0.0630893639835731	0.874784677780712	0.970780587478737
Merged-chr5-76905522-4	chr5	76905013	76906013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	1.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	8.3425173171451	8.8572359676327	8.45287183497314	8.60033023330233	8.93945492213182	8.33035727637965	0.111575795738626	0.676182519778072	0.912421384593547
Merged-chr15-73034790-4	chr15	73034285	73035285	+	907.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164643, intron 4 of 8)	intron (NM_001164643, intron 4 of 8)	21027.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	3.64957069688598	3.81004418141334	3.68613717842365	3.87195245999309	3.94318958458162	4.00836580261576	0.702558023357445	0.177953198350946	0.558949444278644
Merged-chr18-36744615-4	chr18	36744107	36745107	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011879)	promoter-TSS (NM_011879)	-20.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	8.15638991858747	8.30659963883432	7.89713779788282	8.18479735760774	8.43752322414273	8.02424162044264	0.13536203102291	0.576500657472255	0.871585692229598
Merged-chr1-178318667-5	chr1	178318157	178319157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025511)	promoter-TSS (NM_025511)	-496.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	9.31719258971174	9.45761251823549	8.96131771780547	9.07818964585742	9.25014001708205	8.91500176734526	-0.237435005285102	0.305729307435311	0.701883343337569
Merged-chr10-117846077-4	chr10	117845607	117846607	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024457)	promoter-TSS (NM_024457)	-133.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	8.67793997324389	8.18947605918521	8.03028968562412	8.28102550633457	7.94205997477465	7.93068686304156	-0.383128475442688	0.15275358119872	0.52113255570558
Merged-chr2-164860984-4	chr2	164860471	164861471	+	975.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3263.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.95702935292542	6.80454247216223	7.0220752351939	6.78185513475929	7.14692159013975	7.04098625002795	0.115833233238818	0.654438431657125	0.903779343778232
Merged-chr7-143053551-4	chr7	143053084	143054084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110354, exon 1 of 5)	non-coding (NR_110354, exon 1 of 5)	102.0	NR_110355	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	7.31326314368187	7.41505558120113	7.30613546432738	7.21458040427887	7.62723327756628	7.63525939269604	0.235332732608981	0.343251959946349	0.732134758996586
Merged-chr4-125116715-4	chr4	125116201	125117201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11180.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.38934772620309	7.46262804973388	7.62775213425614	7.39572554338937	7.52892220451781	7.19949125676094	-0.15025083819135	0.532393874129091	0.851971173271146
Merged-chr19-9951690-2	chr19	9951190	9952190	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MURVY-LTR|LTR|ERV1	-28910.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.52079847213034	5.66212082054303	5.93339252176141	5.77548896917805	5.89102297504644	5.673340281866	0.154168977206803	0.634978404421088	0.896393504194572
Merged-chr7-126861883-4	chr7	126861392	126862392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172746)	promoter-TSS (NM_172746)	-80.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	6.83371341620361	7.12025019238995	6.81163078566246	7.11082771373478	7.11369847768207	6.98704738129924	0.211173780711538	0.40381734402923	0.779031412271333
Merged-chr7-135716588-4	chr7	135716088	135717088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081117)	promoter-TSS (NM_001081117)	-209.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.07221520081137	5.91672975888888	5.7937580675974	6.30575076839769	6.29106519583253	6.36725227919217	0.641596957859822	0.0262254315892189	0.19229518079624
Merged-chr5-117138740-4	chr5	117138222	117139222	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	5134.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.14904982795407	5.17903080565279	5.16118337089592	4.91667769144282	4.66496824050502	4.98906125722488	-0.67329412329124	0.0753996816848058	0.36159125428477
Merged-chr6-129238036-4	chr6	129237530	129238530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	15.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.61534097170256	7.53494368440864	7.12623423447918	7.77446802064941	7.60617345149088	7.35805890575779	0.209455073728252	0.42718460156673	0.794128157443352
Merged-chr16-57353866-4	chr16	57353365	57354365	+	952.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	588.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.46151763986261	4.99652125793158	5.42506212494403	5.4131760495648	5.53163376495446	5.45880526790267	0.322478655723983	0.371106289295329	0.75531854434738
Merged-chr14-19418821-4	chr14	19418324	19419324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	183763.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	7.51865321842329	9.25112853673533	7.38938180361836	8.15516732445048	8.15817792774398	7.41030924638343	-0.588721035268763	0.499093340413868	0.834241837468002
Merged-chr17-28524139-2	chr17	28523639	28524639	+	770.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6722.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	3.72903071388844	3.46076456739873	3.72056246923384	3.14417013066065	3.25458544674208	3.83614103638143	-0.70530485724909	0.289140952552986	0.686633011876864
Merged-chr8-95888469-4	chr8	95887965	95888965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010325)	promoter-TSS (NM_010325)	-100.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	5.34877722889614	5.59193183584966	5.52182226817432	5.58517123656354	5.55539376588983	5.46791467519687	0.093592828965019	0.776151753418762	0.94480820353868
Merged-chr9-108094568-4	chr9	108094075	108095075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146226)	promoter-TSS (NM_146226)	-95.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	5.69733915106974	5.93787457474435	5.55473870904517	5.89868449014961	5.83440671623096	5.55818012751103	0.0549367243085213	0.867783442973607	0.969442397421746
Merged-chr12-9007224-4	chr12	9006721	9007721	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 15 of 27)	intron (NM_172470, intron 15 of 27)	-22776.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	5.13978170185476	5.39142287483514	5.2373909636868	5.49586754962232	5.19553624714105	5.09534795013592	0.0291063352919452	0.936521289801998	0.986037792257163
Merged-chr7-101908498-4	chr7	101907978	101908978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-2119.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	6.30317049957919	6.41506451061381	6.40998048042237	6.78800035227801	6.73992885512947	6.8738475996997	0.673293242657387	0.00904782740029477	0.0938662037283452
Merged-chr16-35022355-4	chr16	35021870	35022870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023587)	promoter-TSS (NM_023587)	-51.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	5.46897312875433	5.18837936968017	5.2387595939865	5.20350099453085	4.9539851931059	5.17169299155317	-0.414908492572125	0.255830773585244	0.65280036212337
Merged-chr4-126023756-4	chr4	126023347	126024347	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	-812.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	7.41101270908073	7.91068473488888	7.53929874684328	8.17800588438665	8.62583255983903	7.8405732240304	0.881855478647204	0.00253694406311737	0.0371496734556618
Merged-chr9-7220145-2	chr9	7219645	7220645	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35640.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	3.09848474784489	3.20058470092047	3.3661200704612	3.19806790079868	3.29691517460718	3.43624105942475	0.366833283802282	0.558561450540772	0.864727024268474
Merged-chr1-7398061-4	chr1	7397557	7398557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	309137.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	6.26964042805468	6.13842335149228	6.27578376364276	6.15855507366493	6.28819777473659	6.21471196946429	-0.00314123352830263	0.99097684973019	0.998113069044251
Merged-chr5-21366745-2	chr5	21366245	21367245	+	695.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5928.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.64876213398389	4.89331241776301	4.66398100042387	5.40326686618369	5.40505733753177	5.40586307521831	1.38307873768032	0.000229781739719846	0.0056053002048106
Merged-chr2-43556064-2	chr2	43555564	43556564	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	739.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	4.36059973204317	4.42588159170667	4.13948898391515	4.38891232603067	4.04000014121205	4.10974671833116	-0.363141242493144	0.449793294646912	0.808012616706586
Merged-chr9-32500263-4	chr9	32499748	32500748	+	754.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	41204.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.7573448337511	5.56174321284338	5.66627051276511	5.43185653086448	5.23663372957889	5.84974206972694	-0.277592306399826	0.436187426272496	0.799468773190049
Merged-chr13-45006706-2	chr13	45006206	45007206	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4610.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.51231252523665	5.73091004913193	5.30178232047034	4.91680403174071	5.09199932997465	5.01900708570497	-1.04897013951648	0.00409487598858602	0.0528585853642981
Merged-chr14-65834046-4	chr14	65833541	65834541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028039)	promoter-TSS (NM_028039)	-72.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	4.55187108021685	4.42312012888988	4.7365619822014	4.60267478472383	4.71674142100037	4.8015379172721	0.334155916291904	0.423101277280127	0.791826793817611
Merged-chr18-75019567-4	chr18	75019062	75020062	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 1 of 16)	intron (NM_027727, intron 1 of 16)	790.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	4.96533434348051	5.11441948336189	5.41475307030019	5.21484484643818	4.95586357390562	4.96914345881964	-0.240500840441454	0.532176972003771	0.851971173271146
Merged-chr17-26572100-3	chr17	26571583	26572583	+	946.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	10571.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	6.57515014467713	6.57679426100269	5.95361808673159	5.99163993476576	6.12330138463927	5.58666955361163	-0.802157340046475	0.0214467865371365	0.169199223872386
Merged-chr3-90267924-4	chr3	90267417	90268417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356483, intron 2 of 27)	MIR3|SINE|MIR	1403.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	6.29728480417834	6.08569968452074	6.31909252161899	6.10096368244673	6.20632106227079	5.89683307189643	-0.250995295746216	0.395106329459341	0.772579826044138
Merged-chr12-35533305-4	chr12	35532645	35533645	+	777.4375	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	1844.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	4.95120542845399	5.20620784635182	4.94263695313952	5.0531061047808	5.05779664638539	5.04429343409423	0.0122918302595854	0.973658474841961	0.994039095662068
Merged-chr6-3388929-2	chr6	3388429	3389429	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	MTD|LTR|ERVL-MaLR	10642.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	3.03429762821023	3.39428520548431	3.49681694561479	3.71262702412878	3.66139648706075	3.72412824854071	1.40576850236045	0.026066258687388	0.19156697163577
Merged-chr17-48262016-4	chr17	48261488	48262488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2307.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.54087882685911	5.54676790433891	6.11400676133042	5.7214128187908	5.33280573152546	6.13522477627798	0.0144694185629019	0.970777456630828	0.993560292853483
Merged-chr8-11758351-4	chr8	11757833	11758833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113518)	promoter-TSS (NM_001113518)	3.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	7.30956466172181	7.53939076386528	7.44035730159318	7.629255449521	7.47639022313889	7.57693299188111	0.185214444403918	0.419155797401769	0.78883406136263
Merged-chr6-108702018-3	chr6	108701514	108702514	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-41080.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.61628110390851	3.4403165057429	3.35811214241358	3.06561070606793	3.15708001353085	3.31682083253525	-1.25692236418319	0.0484863306443379	0.279334013019773
Merged-chr11-85139111-2	chr11	85138611	85139611	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	844.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	5.72239032991537	5.43318036213958	5.56746613991646	5.37813136907034	5.79468646156594	5.71053027813706	0.118566677625412	0.728660368889261	0.930478966998914
Merged-chr18-60381917-4	chr18	60381417	60382417	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	intron (NM_021792, intron 2 of 2)	5888.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	5.78908032678997	6.08277741061673	6.60878188504976	5.96482401221687	6.10014489236998	6.32070432219167	-0.106303596313842	0.760793786250249	0.941003513539023
Merged-chr17-29245886-4	chr17	29245366	29246366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8076.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	3.30365562278468	3.26397427000303	3.32159070549806	3.01582789484543	2.91426208492828	3.04777821223069	-1.38776246912995	0.0358207068849858	0.232574496480101
Merged-chr11-115163254-4	chr11	115162769	115163769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-72.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	7.66118717635688	7.59005365609516	7.41795159028865	7.58362913704032	7.68372324223908	7.00762957175168	-0.136722724169521	0.619464630553065	0.889785897704524
Merged-chr16-96145328-4	chr16	96144815	96145815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207301)	promoter-TSS (NM_207301)	-104.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	4.61509407189161	4.48694042373427	4.41637589895696	4.44550449236187	4.66188390916109	4.48428850318654	0.0683540383367665	0.873617548868127	0.970440430875665
Merged-chr14-105175794-2	chr14	105175294	105176294	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	1533.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	3.61008217680242	3.67037227696252	3.25783140682274	3.45593026506229	3.44033891554442	3.56411565576503	-0.17634314951284	0.770706242828202	0.94345245755247
Merged-chr4-99184802-2	chr4	99184312	99185312	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30|LTR|ERV1	-9122.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	4.08906357508138	4.09759797816765	4.16703066310828	4.15112618266479	4.05645031716419	4.32214803801777	0.160411735959451	0.734963500119773	0.932617455907478
Merged-chr11-115629796-2	chr11	115629315	115630315	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1520.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	5.09984041283678	5.11334464744604	5.05668168058284	5.22345108420769	5.44204900001566	5.52455691152194	0.620854232243009	0.0784776270961473	0.369927849275789
Merged-chr6-97444332-3	chr6	97443819	97444819	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14967.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.6867243160901	5.87267428293097	6.23585705900324	5.93160340405605	5.78748416135572	6.01155285769216	-0.057020335855476	0.861137164820527	0.967789299492425
Merged-chr2-122418522-4	chr2	122418023	122419023	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22297.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	5.00085716863624	4.69692576161198	4.85576272685165	4.46332877498856	4.19660234085108	4.39765137496648	-1.24236182013822	0.00418304234595039	0.0537465391479061
Merged-chr1-120073998-6	chr1	120073516	120074516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019432)	promoter-TSS (NM_019432)	-236.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	8.25076668389113	8.51975812628335	8.14376509287052	8.51348132229661	8.90218259149798	8.24055197126162	0.37561187883016	0.150498638515913	0.517334494681425
Merged-chr14-76174519-4	chr14	76173996	76174996	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63605.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	3.15229727635837	2.96089319515095	2.99408805035566	2.96211039423593	2.90361381449499	3.12439986954834	-0.213303325696877	0.752883370317757	0.938437724415593
Merged-chr11-114916405-2	chr11	114915905	114916905	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17981.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	6.54272677708831	6.39147389495204	6.32591972584622	5.61418376607572	5.89056196816465	5.71983327996157	-1.14878595384164	0.000128488813779991	0.00350764344389943
Merged-chr8-84970446-2	chr8	84969951	84970951	+	776.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_011563, exon 3 of 6)	exon (NM_011563, exon 3 of 6)	829.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	4.44824869989227	4.07195324969426	4.14345352136735	4.54509730204774	4.21393499513481	4.52403806607293	0.508055814761932	0.28998194766432	0.687700879517227
Merged-chr18-42510169-3	chr18	42509671	42510671	+	978.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-1316.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	3.31488286006321	3.25846674514059	3.62644844349801	3.16947793548578	3.43612796123279	3.27272073473019	-0.388983048651848	0.540417907886627	0.85632302227606
Merged-chr5-115535113-4	chr5	115534603	115535603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-24364.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	7.30694361132115	7.35968828245394	7.52044734302128	7.24091624715749	7.49950737255932	7.37379822482334	-0.021806488136245	0.926597431078303	0.983551822187064
Merged-chr11-101735167-4	chr11	101734713	101735713	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 2 of 22)	URR1B|DNA|hAT-Charlie	2257.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	5.24963552769464	5.22385487500716	5.15878997036549	5.4775693185248	5.67325387639796	5.38831831585741	0.614872900991912	0.0725021818743718	0.353703186526895
Merged-chr18-80390870-4	chr18	80390380	80391380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26626.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.62022484573492	4.71170072306648	4.50807728941495	4.45042395554694	4.38079300040809	4.48973099353818	-0.459890653113391	0.277480177681696	0.674707488501667
Merged-chr9-95546975-4	chr9	95546553	95547553	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12764.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.7727266520592	4.25802076933229	4.37299218467985	4.71840367365717	4.50643605328739	4.08948607034082	-0.0548344411553835	0.913324534251453	0.980567054346919
Merged-chr2-124672391-2	chr2	124671891	124672891	+	577.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18810.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.32648529318157	3.41098921242	3.3256059078371	3.03006218938703	3.33048119673029	3.28389979960463	-0.531443714201012	0.403672456049409	0.778948248020816
Merged-chr4-20032654-2	chr4	20032154	20033154	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-9398.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	2.51887120218912	2.5547091758167	2.75364374996676	2.67039576744069	2.53896940026004	2.88459927622496	0.50188101262024	0.51665630397501	0.844296391152365
Merged-chr1-156615763-4	chr1	156615257	156616257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	56970.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	7.04242343924723	7.06467031107427	6.67419697162774	6.30118066310232	6.18174054446231	5.86279158518856	-1.2944106677444	1.25002968680694e-05	0.000484454914670851
Merged-chr2-90582929-2	chr2	90582429	90583429	+	778.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2282.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.31923623932697	4.15769938250132	4.07308343323646	3.98270646524239	4.07540873812501	4.27874937539694	-0.229611804770764	0.634687580062954	0.896354115104213
Merged-chr1-43445888-8	chr1	43445401	43446401	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010879, exon 1 of 5)	5' UTR (NM_010879, exon 1 of 5)	150.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.69130467497579	6.71350124052768	6.16896982726361	6.8897130665422	6.66432621466328	6.2758207482637	0.131535770632802	0.680899600572237	0.914504446345046
Merged-chr17-24008481-1	chr17	24007981	24008981	+	589.0	f1_balb.idr	Intergenic	Intergenic	-10381.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	4.44965365983873	4.26979995973187	4.41953671023597	4.15192515487222	3.78472176810957	3.8148358182656	-1.2932386255122	0.0105415110840551	0.104238165978496
Merged-chr9-118671096-2	chr9	118670596	118671596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	intron (NM_133721, intron 9 of 27)	-40596.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.52454443069686	6.23462750827726	6.47640175711415	6.51834398828687	6.54561460998808	6.32810110643083	0.0967855757690483	0.727290407799932	0.930141386998351
Merged-chr8-61606995-4	chr8	61606502	61607502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	(CA)n|Simple_repeat|Simple_repeat	-15833.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.50371300096929	6.43136507246988	6.45595840881278	6.53820091243667	6.44740964986001	6.73021567352133	0.16759122012454	0.53002465450835	0.851070276054813
Merged-chr8-122376516-4	chr8	122376007	122377007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-102.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	6.94466232292823	6.96768631288298	6.60977779871465	7.17032713404116	6.64541704834567	6.80139858604679	0.0501832717986935	0.861487702575488	0.967834587941689
Merged-chr16-76366071-4	chr16	76365588	76366588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6961.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.88000497354721	5.45256721499046	5.83242546105568	6.0019362310199	6.07591749050715	5.68365637655453	0.374571443911025	0.263006719997457	0.661016194688385
Merged-chr5-63875064-4	chr5	63874576	63875576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	62581.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	4.32533617193286	4.44603384788674	4.33039919314469	4.42366624229014	4.31869365157715	4.48390135588294	0.0864384368595426	0.844072534011468	0.963711687630021
Merged-chr13-37291519-4	chr13	37291012	37292012	+	857.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53833.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.12785454340477	5.44845550521618	5.23212160478789	4.82280855444718	4.98201996821744	4.87502621039649	-0.799869092608215	0.0336665530510812	0.224244161521952
Merged-chr8-105289207-4	chr8	105288720	105289720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177788)	TTS (NM_177788)	308.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	7.1177094173021	7.03048488992291	6.74571752873511	7.27689685683655	7.20095051892961	6.82092346706829	0.212844698682261	0.433663250438467	0.797909324825555
Merged-chr1-153488359-2	chr1	153487859	153488859	+	711.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-699.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	5.94328625376566	6.36884538760627	6.55524942372505	6.2490656353821	6.64090489804076	6.54807330896921	0.30330437866689	0.337005873830882	0.726949528325002
Merged-chr11-20201852-4	chr11	20201362	20202362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	CpG	450.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	9.27187367270372	9.58808578071917	9.11673321674883	9.28641669151083	9.46059232580616	8.97509977483756	-0.113575932790914	0.637834575607014	0.8973803061326
Merged-chr16-23506042-3	chr16	23505546	23506546	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 2 of 10)	intron (NM_001359083, intron 2 of 10)	14769.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	3.8922492058876	3.96722983477703	4.06642169682235	3.93870204985523	3.54571018652493	3.84727355682078	-0.607013068017137	0.258190743099949	0.655659776470938
Merged-chr11-75510805-4	chr11	75510325	75511325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029938, exon 4 of 8)	exon (NM_001029938, exon 4 of 8)	731.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	5.65574985620313	5.91133206238367	5.98523785615403	5.66554305321862	5.48049863322352	5.86478614752384	-0.337026334036053	0.30498921462015	0.701230797737315
Merged-chr1-134080268-5	chr1	134079785	134080785	+	853.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1130.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	5.26894935883999	4.70137216976038	5.12697233039892	5.21180695717083	4.93415658929637	5.12479132727768	0.0805946924369655	0.842179320534113	0.963002495523594
Merged-chr1-106231521-4	chr1	106231019	106232019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	Lx7|LINE|L1	59650.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	7.05397802728542	7.21496682285978	6.87893314728748	6.94405415502548	6.90566110397484	6.86288251236073	-0.242487113392536	0.332338994032929	0.723521765316285
Merged-chr17-17838364-4	chr17	17837904	17838904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001162909, exon 8 of 9)	exon (NM_001162909, exon 8 of 9)	7429.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	8.55235339084655	8.43528845936905	8.08390487930496	8.18516184701492	8.04397818796467	7.95816649159366	-0.436425332534967	0.0626162556934647	0.325473101183272
Merged-chr7-127016781-4	chr7	127016317	127017317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001102563)	TTS (NM_001102563)	535.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	6.50873457178397	6.67575345066541	6.93679373997932	6.63003102879906	6.88091544374963	6.95499149398593	0.183309505892264	0.506107434856451	0.838289047715586
Merged-chr5-86804178-4	chr5	86803700	86804700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-66.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	8.48282414094933	8.55769908166072	8.23410732118867	8.50431705884709	8.18479178393607	8.27688537125245	-0.15065905116222	0.50534422033086	0.838055364884185
Merged-chr3-100641307-4	chr3	100640799	100641799	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 5 of 12)	intron (NM_010763, intron 5 of 12)	44174.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	3.67074155870878	3.55347297097225	3.63896244000044	3.41611125053894	3.58451731779264	3.85579116731929	0.0114842722225703	0.98399720747137	0.996464361754829
Merged-chr18-24205477-3	chr18	24204976	24205976	+	939.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	132.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	4.85603470080647	4.63797544922444	4.77707888585686	5.07310917488279	4.26019688311766	4.9859834741103	0.132555717222609	0.779502005415891	0.945782278345346
Merged-chr18-62090392-3	chr18	62089889	62090889	+	787.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89592.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.89334801688527	3.98546547748769	3.99270692156633	4.13915911411837	3.95014780908735	4.24406430742691	0.446964257732664	0.365556466713847	0.750706881219779
Merged-chr4-133339430-4	chr4	133338925	133339925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199306)	promoter-TSS (NM_199306)	-110.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	6.0967395237784	6.23342990401794	5.98356246153074	5.77754836410864	5.74335616915231	5.53671329279189	-0.733997675206609	0.0170070892963113	0.144918165506141
Merged-chr2-126073898-4	chr2	126073402	126074402	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	39244.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	5.05151849184255	5.29580889703417	5.13498756850442	4.87080393359485	4.80615929780641	4.95731720500343	-0.63258245005281	0.0908776280259761	0.401217470832781
Merged-chr6-108659819-3	chr6	108659325	108660325	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-804.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	9.2689418824702	9.13847833353938	8.68298194582242	8.86363250954128	9.07868375247665	8.56434715586645	-0.274452763115705	0.286170489472566	0.683463892237707
Merged-chr10-78185164-4	chr10	78184654	78185654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-5.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	6.45876119990705	6.81989778399264	6.80825403298872	6.91772170137968	7.08711010927617	6.88139532792767	0.414165253823742	0.120181800565995	0.463632401200581
Merged-chr17-47629014-3	chr17	47628490	47629490	+	854.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1700.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	5.92511693562375	6.46340689069324	5.85217304470557	6.51530305892932	6.43040316865971	5.9674541344781	0.352554974798983	0.308259829580824	0.70433269900764
Merged-chr2-25460306-2	chr2	25459806	25460806	+	863.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153557, exon 4 of 7)	exon (NM_153557, exon 4 of 7)	788.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	4.48383449260112	4.82775974121387	4.59426991140602	4.72128378131035	4.76566726675051	4.57680834104415	0.113424652559851	0.787626904941805	0.94877064431094
Merged-chr2-25628042-4	chr2	25627538	25628538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-64.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	7.28722379202906	7.40777868230542	7.36413056161856	7.6511605378212	7.70313871180993	6.95664337109499	0.20169784253764	0.477906209876568	0.823464515587694
Merged-chr3-30968946-3	chr3	30968471	30969471	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165954, intron 1 of 14)	CpG	444.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	7.29181049242312	7.48717517005093	7.2277668401552	7.49782023139217	7.14274796494643	7.10921454151229	-0.119129407793325	0.640251446395862	0.898404369829977
Merged-chr3-79075230-4	chr3	79074713	79075713	+	921.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099624, intron 19 of 23)	intron (NM_001099624, intron 19 of 23)	69674.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.88861165297582	5.11385230900194	5.16466003836157	4.75490163323779	4.48540082425824	4.74068389036568	-0.903033815314141	0.0246951561902454	0.18556052962913
Merged-chr12-99479602-2	chr12	99479102	99480102	+	926.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-29528.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.04792903922897	3.09968990268648	3.59959876897315	3.30834563533225	3.24029496090373	3.19391752624872	-0.0667545073399763	0.920725849294905	0.982463724790289
Merged-chr2-129374262-2	chr2	129373760	129374760	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015474, intron 2 of 2)	MTC|LTR|ERVL-MaLR	-3121.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.53835333225091	6.3953261786209	6.08184134842148	6.48941422496512	6.60328539819506	6.74333374909714	0.399440080041444	0.16451431333846	0.539123991728306
Merged-chr1-39586075-2	chr1	39585575	39586575	+	998.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-8728.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	5.11545066377107	5.40228343700478	5.10802517199767	4.9060942129692	4.77961122806565	5.20483967089009	-0.547789092510282	0.157718109547466	0.529198725332145
Merged-chr6-71419073-1	chr6	71418573	71419573	+	567.0	f0_balb.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	21564.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	3.95783661948913	3.92234828305544	3.97136318936728	3.8304058159042	3.54106620470065	3.99272177695517	-0.504830084732143	0.348034323164054	0.735982909356061
Merged-chr2-153704446-3	chr2	153703936	153704936	+	787.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-36851.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	3.79470245519928	3.62145204136491	3.60705488632619	4.28408057968747	4.24384577827122	3.74106884665309	1.35720695019442	0.0147162005329447	0.130879180626898
Merged-chr1-53792224-2	chr1	53791724	53792724	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7009.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	3.57360152511226	3.50205860982195	3.32049584194446	3.21822345919865	3.14473925075208	3.33504543815421	-0.985929430329542	0.111092970294557	0.445222471421143
Merged-chr13-20784476-4	chr13	20783976	20784976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9637.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	5.77804723898723	5.42886528421435	5.26700607822523	5.42012630493335	5.28686192911469	5.42718889839801	-0.279093232444893	0.43328453250343	0.797786002648364
Merged-chr16-94370831-4	chr16	94370260	94371260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	21.0	NM_009441	22129.0	Mm.213408	NM_009441	ENSMUSG00000040785	Ttc3	2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119	tetratricopeptide repeat domain 3	protein-coding	7.76656084945631	7.82491939081092	7.70802933152452	7.86966905657371	7.70031905828558	7.36942078586535	-0.142407066328434	0.556759993410257	0.8637300661975
Merged-chr11-80154869-5	chr11	80154342	80155342	+	849.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 1 of 10)	intron (NM_172133, intron 1 of 10)	680.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	7.42678462375026	7.71960161786107	7.72097563992252	7.76096348919672	7.74079382906172	7.63386384796743	0.127380218160547	0.580349777036913	0.872806789923022
Merged-chr10-8736152-4	chr10	8735682	8736682	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 16 of 19)	L1MB2|LINE|L1	149888.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.9469106882515	3.85024607204531	3.88975056564027	3.81903796866791	4.10777303632996	4.14815812006867	0.410112109364241	0.419497065625444	0.789056939588171
Merged-chr10-128702805-4	chr10	128702310	128703310	+	797.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183417, intron 3 of 7)	RSINE1|SINE|B4	2241.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	3.87618493311537	3.87148527432662	3.83812410300547	3.91359285414824	3.7815134179081	4.05233698258371	0.152112607576363	0.766485715669848	0.942467872936068
Merged-chr7-3712545-4	chr7	3712068	3713068	+	922.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011095)	TTS (NM_011095)	7814.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	4.57052132883473	4.41669896457492	5.16636294850131	4.61000861827572	4.562311706199	5.2001270313846	0.148166811182452	0.763154147247585	0.941711234953909
Merged-chr11-79307207-4	chr11	79306701	79307701	+	941.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32691.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	5.33552943156156	5.37274445144479	5.55226310932795	5.32507812675054	5.23225904037944	5.35751234929437	-0.226797545871683	0.505055601067288	0.837928144581384
Merged-chr5-64212366-4	chr5	64211906	64212906	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17951.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.393310642226	7.73135976506355	7.4552369402104	7.31665059344617	7.59157670685592	7.02694246347845	-0.284832524280739	0.291384686792448	0.689051679650718
Merged-chr14-60910342-4	chr14	60909826	60910826	+	715.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	125760.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	4.12439333282434	4.21400211710886	4.43747699885658	4.49887726719445	4.42874037926234	4.80429237804457	0.825757924340667	0.0709926674680084	0.349525855612934
Merged-chr5-43356403-2	chr5	43355903	43356903	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121049.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	2.54014084680518	2.40245820368179	2.62212399716	2.44964519357148	2.42132247858446	2.57221120940332	-0.253329283966162	0.74965090109182	1
Merged-chr2-166652293-2	chr2	166651793	166652793	+	761.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MIRb|SINE|MIR	61539.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.60302972177459	4.71598371368611	4.80679139450367	4.74043920293523	4.74632539830036	4.55300904541403	-0.0377678161438076	0.926109350381046	0.983305773102619
Merged-chr8-123849539-2	chr8	123849040	123850040	+	766.666626	f0_balb.idr|f1_balb.idr	intron (NM_028536, intron 2 of 3)	RLTR17|LTR|ERVK	10669.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	2.94582787473763	3.41412601277637	3.26324137213411	2.62992339848641	2.46662019855248	2.86995451987718	-3.37518477983944	0.000365128213951942	0.00817808571373167
Merged-chr12-4769133-4	chr12	4768644	4769644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361147)	promoter-TSS (NM_001361147)	123.0	NM_175431	207921.0	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	5.11370346011364	5.27475192403873	5.27027496320555	5.2040392586887	5.30395864312359	5.06506822621419	-0.0316645739670673	0.929231598100385	0.983987942057929
Merged-chr6-98997906-4	chr6	98997412	98998412	+	845.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	30386.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.14541308979163	4.02458566548795	3.8953876611934	4.03162607912823	3.79259256885338	3.91405953052097	-0.360972226142045	0.477568081067964	0.823237639056184
Merged-chr10-62793288-2	chr10	62792788	62793788	+	838.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	-920.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	6.39369972903503	6.97677003803795	6.49965132033982	6.63714513458093	6.99135360641595	6.52243103375724	0.133464682977753	0.669776001699127	0.909740802307883
Merged-chr1-87619450-2	chr1	87618950	87619950	+	883.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010566)	promoter-TSS (NM_010566)	-862.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	2.20742188525868	2.23995812635705	2.38162382085061	2.05710278460337	2.19590098468762	2.26507267377003	-0.71222789681605	0.421982731308944	1
Merged-chr4-102585666-3	chr4	102585164	102586164	+	724.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-1894.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.97467436236697	4.63212337063141	4.96721314376842	5.27217424316718	4.95904613741881	4.96023420830739	0.456018310689894	0.252473362607774	0.649921954382832
Merged-chr3-138527996-4	chr3	138527489	138528489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	CpG	721.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	6.95889306079314	6.50396768859125	6.31274002004967	7.21698747617708	6.31018492008324	6.58613489838902	0.216951883888416	0.546964836824229	0.859168905101902
Merged-chr7-81849858-2	chr7	81849339	81850339	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9162.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.66301576332848	7.6190927707033	7.46420959429582	7.39842207934295	7.52385137349262	7.72770683759997	-0.0534160170501301	0.819606759441515	0.957283576025177
Merged-chr13-92963714-3	chr13	92963258	92964258	+	768.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109546.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.20782136310568	3.16472772247488	3.31782648391791	3.99278904705545	4.18140255474475	3.69177945873108	2.87451557656852	6.72401739811199e-06	0.000285164138461826
Merged-chr19-17339782-3	chr19	17339282	17340282	+	998.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136484)	promoter-TSS (NM_001136484)	-277.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.66169033214308	3.4063321606933	3.55291244894455	3.27798620545986	3.04498244766024	3.29327554636727	-1.37642655954003	0.0297039054635067	0.207569917286725
Merged-chr1-91052349-3	chr1	91051862	91052862	+	926.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1082.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.68305765003908	6.53212546008725	6.59485544280291	6.35774459903293	6.56984401879409	6.63733448034094	-0.128154620529636	0.630509533662736	0.894734411238057
Merged-chr5-136186934-4	chr5	136186436	136187436	+	860.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025774, intron 5 of 5)	intron (NM_025774, intron 5 of 5)	12018.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	2.74784575583785	2.42703390782976	2.76398200124537	2.47545389383214	2.38692921844646	2.39441121970611	-1.41970035443175	0.0903253456431913	1
Merged-chr16-91455651-2	chr16	91455151	91456151	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-9453.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	6.69737746198141	6.18992852856419	6.78566754716149	7.14255620827983	6.39619807150134	7.40627793057281	0.719119617663093	0.0454366189756804	0.269088269873909
Merged-chr18-39446818-4	chr18	39446322	39447322	+	947.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	40423.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	4.64370410125448	4.826687332136	4.8248953913713	4.74772748864681	4.95764544251078	5.06410919229902	0.360786698966162	0.361716222486992	0.747458707295016
Merged-chr10-86992615-2	chr10	86992115	86993115	+	860.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	15327.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	3.21244174201946	2.94398330053712	3.09151970266412	2.94450482497431	2.91214646048736	2.85901286646	-0.84616846040229	0.221449394888712	0.616101419349337
Merged-chr18-43509148-4	chr18	43508634	43509634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70848.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	5.06814065523868	5.17875892607431	5.41825554350063	5.38411338286607	5.22642373345781	4.9910570693382	-0.00558334616449517	0.988032546018068	0.997273215777763
Merged-chr6-17410454-6	chr6	17410012	17411012	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81|LTR|Gypsy	-53445.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.43590169819861	4.34870269349417	4.45189629973789	4.4960426670258	4.44796217661644	4.85848297642755	0.475786903953456	0.280560687956223	0.678591178520477
Merged-chr18-6240848-3	chr18	6240360	6241360	+	988.388855	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_008448, intron 1 of 25)	CpG	664.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	7.23340719410018	7.52367344136991	7.248130446434	7.22258797715562	7.16241658131569	7.31697046430215	-0.171900283485805	0.477473551854311	0.823237639056184
Merged-chr10-86948694-2	chr10	86948194	86949194	+	766.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 17 of 68)	L2a|LINE|L2	59248.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	5.04270039771178	4.92154690343565	5.2426951793113	4.745341134524	4.54361688202262	5.1552317359313	-0.534804307120717	0.203680328122206	0.593848111693788
Merged-chr9-37248572-3	chr9	37248063	37249063	+	881.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	7175.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	6.25860461428741	6.46202804260924	6.31102058108279	5.81076171399353	6.14512494036466	6.05803505851937	-0.560073220842273	0.0573898650903974	0.309178750083676
Merged-chr1-82283286-4	chr1	82282809	82283809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010570, intron 1 of 1)	CpG	8130.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	5.50784155144028	5.88518070051607	5.74091696171826	6.07696466085327	5.86639957761572	5.97432533780977	0.445843355122653	0.160646851316294	0.53337460660229
Merged-chr4-154907972-4	chr4	154907484	154908484	+	846.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8941.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	3.20610414110751	3.12373337456512	3.17304883411782	3.17669306597435	3.23299211654179	3.5152346397334	0.584653999004989	0.35674093754673	0.743448231367782
Merged-chr2-27688166-4	chr2	27687668	27688668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10967.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.67159530441111	7.8395561671286	7.33755485392796	7.44668090334007	7.5814055988634	7.5534316731003	-0.165312885431762	0.504232682917565	0.837539115920757
Merged-chr18-9492285-4	chr18	9491790	9492790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-42136.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.88071548734104	7.03893343990829	5.75719609142337	6.58839033191166	6.57880788038878	5.3963867808367	-0.602816336124783	0.517264001066045	0.844527100635531
Merged-chr9-47530194-4	chr9	47529690	47530690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	20.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.99231738507153	6.8652595378835	6.8332947613103	6.73546220868811	6.92358713051191	6.78553775923436	-0.123215309540466	0.622474497941142	0.891170991477745
Merged-chr4-141031226-2	chr4	141030726	141031726	+	865.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	20589.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	3.34263474914523	3.32257564208819	3.54246249315993	3.93360875315605	3.62637684121595	3.61427863854701	1.20472590027708	0.0391045249442697	0.245171594457532
Merged-chr15-79757284-4	chr15	79756792	79757792	+	952.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	14594.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	5.22185103893243	5.22104476363621	5.17896468251439	5.23836197563121	5.34547517250804	5.42924727860105	0.256124493546138	0.456866602947554	0.811921067428292
Merged-chr18-60747158-5	chr18	60746691	60747691	+	819.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348101)	promoter-TSS (NM_001348101)	-445.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.64565490378428	6.63472299373514	6.8014510022576	6.81872342968827	6.95238491761745	6.33091532711029	0.0782388350480747	0.787660609768661	0.94877064431094
Merged-chr11-16507581-4	chr11	16507100	16508100	+	961.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011343, intron 1 of 3)	intron (NM_011343, intron 1 of 3)	884.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	7.48095105846456	7.30173621160475	7.15740368862108	7.42711713870259	7.42115447159242	7.21505136294248	0.0544884880115064	0.822137689370884	0.958041123079214
Merged-chr1-136129434-3	chr1	136128932	136129932	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046167, exon 3 of 4)	non-coding (NR_046167, exon 3 of 4)	1751.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	3.29051644266406	3.48818808793051	3.48575078800792	3.59864330640196	3.31410360484835	3.75938844754393	0.507474821159943	0.402105806291805	0.77787096574423
Merged-chr10-60281848-2	chr10	60281348	60282348	+	969.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2613.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.66517683769479	7.77531380151432	7.73652210362116	7.89263571449571	8.33336709743681	7.85272555804675	0.467726195466376	0.0557692595496139	0.30397278583809
Merged-chr12-24786619-1	chr12	24786119	24787119	+	720.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-44980.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	4.04731173324235	4.51854068228644	4.01661183171925	3.28096383650729	3.50924619510076	3.41790031682451	-2.79408742763594	1.64537130895686e-05	0.000616702954394967
Merged-chr6-28621691-4	chr6	28621197	28622197	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	141349.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	5.4917984154238	5.47528830260217	5.36252833558986	5.79531478603474	5.87897117698484	5.69182126060773	0.64470709292751	0.0429227583782445	0.2597844689509
Merged-chr10-71238131-4	chr10	71237627	71238627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009360)	promoter-TSS (NM_009360)	-83.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	6.18661318582496	6.46942101477688	5.97125957000859	5.93908088940137	6.23626206781158	5.9080380254123	-0.319623722648882	0.314720007985299	0.709062506762149
Merged-chr6-127237385-2	chr6	127236885	127237885	+	698.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	70582.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.65169183094294	4.78800589228264	4.75613657527895	5.10161350031386	5.03058143837881	4.82278439374981	0.589396619070963	0.129978363462419	0.482177426080294
Merged-chr5-140618781-2	chr5	140618223	140619223	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	11382.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.40133256443617	6.40493484969087	6.53055599696913	6.42132069923835	6.60181845511902	6.31046297859844	0.0291352923285645	0.914936608186315	0.980959026698783
Merged-chr12-111435351-2	chr12	111434851	111435851	+	724.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7310.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.76162974038794	4.59879403994635	4.61302295114914	4.48064057257173	4.5888165285012	4.71829638729259	-0.162416063021459	0.695236593553389	0.919230570201314
Merged-chr4-95711487-4	chr4	95710982	95711982	+	795.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	132061.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.00482532270623	3.09991784190166	3.05617395523683	3.14746924317269	3.05827045357363	3.18634320030486	0.327925163814917	0.61299597985905	0.886978895339216
Merged-chr3-51228218-4	chr3	51227738	51228738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	B3|SINE|B2	3791.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.71959443409351	3.57512261383795	3.66433683904412	3.64313050415559	3.34552527178038	3.97345758180044	0.0562721669710509	0.924919350452051	0.983070278897208
Merged-chr9-123016057-3	chr9	123015583	123016583	+	655.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 32 of 34)	ORR1E|LTR|ERVL-MaLR	-5243.0	NM_025339	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	4.20258002567173	4.22408644974224	4.19600412556769	4.34204584689858	4.14009860176801	4.43829702884827	0.257939951970033	0.576572145950214	0.871614678249799
Merged-chr6-56716306-2	chr6	56715806	56716806	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030235, intron 1 of 15)	intron (NM_030235, intron 1 of 15)	1401.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	3.0287761602668	3.18611592981223	3.12053496693551	3.1693597038672	3.06676247991573	3.46483784110902	0.518293770780456	0.431060249027569	0.796644918588116
Merged-chr7-135647699-1	chr7	135647199	135648199	+	541.0	f1_c57bl6.idr	TTS (NR_015548)	TTS (NR_015548)	-4200.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	3.09390231953475	2.68259160480463	3.28820565323192	2.87137720904133	2.70918257072402	3.14622341413833	-0.565883484932279	0.465094828703953	0.816792117070463
Merged-chr11-115697979-2	chr11	115697479	115698479	+	871.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	RMER15|LTR|ERVL	1555.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.3159727626133	6.48713243869975	6.35535476671058	6.64151567636766	7.06456313825148	6.7324245252373	0.705646902342114	0.0113465924139574	0.109986866446944
Merged-chr1-85896278-2	chr1	85895778	85896778	+	886.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1768.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	6.80002334721444	6.33155069709975	6.55923623934532	6.80530773194712	6.87815321763498	6.73462443855294	0.364044672306401	0.188342246043327	0.573856303406978
Merged-chr11-69584680-2	chr11	69584180	69585180	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	4321.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	3.28393692020242	3.07995750274504	3.54759279785073	3.30989039375469	3.30216446960895	3.29911427975916	-0.0240346723597888	0.969899626072976	0.993248265719985
Merged-chr10-81408296-2	chr10	81407796	81408796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 4 of 8)	intron (NM_026756, intron 4 of 8)	-1279.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	8.39656808244903	8.42947635502003	7.89906661668603	8.02258732119793	8.16032327001319	7.67679745408714	-0.414274111994147	0.116503224390016	0.455679603553968
Merged-chr10-10429251-4	chr10	10428746	10429746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43068.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.65612285182758	8.18188162456006	7.73657483013175	8.1042469447342	8.32693799425213	7.91226442823422	0.347784038209311	0.184271661955137	0.567896082682157
Merged-chr3-27316191-2	chr3	27315691	27316691	+	692.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	-886.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.40145245434005	4.65597010896912	4.29985937787015	4.58215460595859	4.61981747936912	4.78630987154872	0.46058556858978	0.291599201207525	0.689180216265016
Merged-chr2-57116106-4	chr2	57115607	57116607	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-1069.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	5.1234751689672	4.41463100431915	4.75250989129817	4.86692567787334	4.43563638688529	4.38796028176889	-0.501062604865646	0.297995749197235	0.694758301901232
Merged-chr1-39578695-4	chr1	39578196	39579196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1349.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	8.04557913509046	8.20357423978755	7.74961590434224	8.00157472694155	8.17681864372491	7.98018297126941	0.0545133054714112	0.817101858270954	0.956754861188725
Merged-chr8-115701948-3	chr8	115701450	115702450	+	889.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4944.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.6866747803524	6.06186641314477	6.0087150876146	5.86700390895849	5.98270725250548	6.09101743891558	0.0917314781322813	0.768283462890267	0.942864224975033
Merged-chr17-25761496-2	chr17	25760995	25761995	+	688.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Cheshire|DNA|hAT-Charlie	-7117.0	NM_001356286	56047.0	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	3.94905585513598	3.97943512076779	4.01205869767827	3.9727664341558	3.7652068705579	3.88469217554536	-0.326629807526391	0.517356238300238	0.844527792582824
Merged-chr12-113141527-4	chr12	113141017	113142017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347443, intron 1 of 6)	intron (NM_001347443, intron 1 of 6)	912.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	5.89180558691178	5.35707335275235	5.18325143038631	5.68292634789837	5.62009275979664	5.51333478767839	0.153735989732644	0.682100475451807	0.914935862547256
Merged-chr2-73553064-4	chr2	73552570	73553570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23583.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.60588063556671	6.10995817352782	5.63192725994084	5.68658195581538	5.73375962645271	5.60937517472306	-0.241897278973753	0.47723928538843	0.823211450952012
Merged-chr18-77713490-3	chr18	77712909	77713909	+	928.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027978)	promoter-TSS (NR_027978)	601.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	7.00082498729604	7.12989259164034	6.9785459639467	7.02798924547718	6.55524422675117	6.77458339120416	-0.374477760983799	0.162501304666676	0.53593556847568
Merged-chr11-121704249-5	chr11	121703807	121704807	+	816.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1880.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.69289483023211	7.62122477424882	7.37053391878989	7.54590409075345	7.73705505011684	7.47122794756437	0.0293427604403999	0.902194959289488	0.977426235982703
Merged-chr16-91462888-4	chr16	91462374	91463374	+	985.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2230.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	7.77161692304687	7.58487668785756	7.51684661921957	7.88864663573298	7.99498344262842	7.58381067209448	0.301135777073599	0.211084484674325	0.603477171445767
Merged-chr17-46829728-2	chr17	46829228	46830228	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100452, intron 3 of 10)	intron (NM_001100452, intron 3 of 10)	1685.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	5.79323782741829	5.68089555837466	5.82891486698706	5.53356460069336	5.87906149032307	5.572266755234	-0.149318567655825	0.646200693197074	0.900938614137053
Merged-chr5-12044757-4	chr5	12044257	12045257	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	126714.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	3.05556373305617	3.22924468694261	3.59825317922073	3.35207571821581	3.30431343456619	3.30150594456005	0.0525273600654844	0.935544024624456	0.985869643214979
Merged-chr9-106892048-4	chr9	106891564	106892564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029103)	promoter-TSS (NM_029103)	-126.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	8.15766815991246	8.25466132753893	8.04010844658802	7.92340177329246	8.18745587316436	7.97677252573242	-0.167068049768485	0.448841111368867	0.807454029128485
Merged-chr17-24707017-2	chr17	24706511	24707511	+	999.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145396, intron 1 of 21)	B1_Mus2|SINE|Alu	642.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	5.85203168815772	5.94905129062423	5.57983943786604	5.85594890895211	6.12205059954586	5.75537142779223	0.211773004374501	0.514900720329194	0.843311862380436
Merged-chr18-66476532-4	chr18	66476031	66477031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17927.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.1154794577124	7.36048708015504	7.18420019287272	7.4642993813979	7.93555723748059	7.40516615473641	0.59942068452708	0.0242897845805021	0.183486554278204
Merged-chr4-115847639-4	chr4	115847186	115848186	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8488.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	7.87120536678171	8.06609268605648	7.68898664413898	7.50920987696218	7.91518670500941	7.81524302173033	-0.185804571724128	0.452066629302866	0.809286173636239
Merged-chr5-125172987-2	chr5	125172487	125173487	+	623.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	6227.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	3.24545130421755	3.12873192854187	3.20549007596375	4.05294298733011	3.86771913863415	3.69844384648212	2.68391608684393	2.64829181030374e-05	0.000926657127635633
Merged-chr17-14826912-4	chr17	14826402	14827402	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175173, intron 24 of 24)	intron (NM_175173, intron 24 of 24)	116222.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	2.94276442639654	2.90505131490196	3.14796141444378	3.64850097922462	3.37910093335245	3.22271572425993	1.89588892104182	0.00531595905071578	0.0638099135447142
Merged-chr17-67330429-2	chr17	67329929	67330929	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24030.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.06153188464897	6.35985792944077	6.1104107790219	6.54785038552875	6.77100736671462	6.42073697370516	0.665055511042337	0.0213845827730964	0.168780828818472
Merged-chr19-5849996-4	chr19	5849504	5850504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-4524.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	8.35830734038772	8.42483341479418	7.99136430593581	8.13833418738494	8.38158196003929	7.57583200202901	-0.268518931744315	0.34758913433098	0.735652974422286
Merged-chr3-8664727-4	chr3	8664230	8665230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010423, exon 5 of 5)	exon (NM_010423, exon 5 of 5)	2308.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.18615097022844	3.64973935643253	3.79872673516896	3.51743304812848	3.5697085620578	3.86868017969398	-0.805498984222095	0.165870192669058	0.541084333635215
Merged-chr3-115818905-4	chr3	115818421	115819421	+	968.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69138.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	4.88724277317595	4.71165545371727	4.71761393893131	4.52187021829693	4.3055151855592	4.15381980522241	-1.07308493935081	0.0153602418021878	0.134934016034252
Merged-chr9-111035837-4	chr9	111035336	111036336	+	956.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	16544.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	5.02341350244923	4.68133952234128	4.9184116553667	5.05159644212381	4.64611952642343	4.94762680417326	0.0121165515105329	0.976472606839596	0.994723308989508
Merged-chr4-62849096-2	chr4	62848596	62849596	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116478.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	2.65854776885835	2.58539168095819	2.78358290650846	2.86987581741448	2.51055558071358	2.73424249783653	0.192735733050403	0.801915689143099	0.953103181908311
Merged-chr14-21848388-4	chr14	21847925	21848925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	485.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	6.41707365196227	6.56787042680022	6.42271946127798	6.1990067927446	6.15125605421558	5.59753553999183	-0.744098875945211	0.0195350839603488	0.158877457352429
Merged-chr11-59941632-4	chr11	59941129	59942129	+	733.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6518.0	NR_045273	100504121.0	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	2.62895890684395	2.74376111853033	2.73725795574841	2.41206970303013	2.48168451933408	2.43344643815495	-1.60433975220683	0.049786775659268	1
Merged-chr13-58129287-1	chr13	58128787	58129787	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-731.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	8.38418687676453	8.61618374797207	8.40274441894912	8.57596394479247	8.35215080368376	8.40641376594317	-0.0366342288723178	0.863856086075993	0.968269312109804
Merged-chr15-31331949-4	chr15	31331463	31332463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027496, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	35796.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	6.29280047328044	7.01831911980151	6.10797916396028	5.9004838634412	5.86856572811116	5.24093998546108	-1.40266901439737	0.000556460412337475	0.0114269392867168
Merged-chr1-136570747-4	chr1	136570255	136571255	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-54146.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	6.85885499624564	6.85910795177992	6.86221952172998	7.4034721645047	7.55755621448073	7.00819060167011	0.745933603120957	0.00451857055609197	0.056984119253001
Merged-chr11-73023957-2	chr11	73023457	73024457	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018883, intron 1 of 15)	L2a|LINE|L2	4949.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	5.38212275181816	5.20801293579138	5.19021566160009	5.02296894231556	4.92269967116559	4.97606767463669	-0.615978270196102	0.0886998719497577	0.395357775080107
Merged-chr12-4593028-4	chr12	4592546	4593546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	38.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	8.33904714181936	8.4057079428672	8.05591451187517	8.43360531879802	8.09919792037453	7.79393964362546	-0.194292347436427	0.453673626155263	0.809939157597879
Merged-chr14-10453122-4	chr14	10452619	10453619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	339.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	3.59140188611615	3.9808625466767	3.6538064875261	3.8743556095351	3.77261600124426	3.83131909707121	0.206486700659082	0.706924048518884	0.923161381966479
Merged-chr11-120579873-3	chr11	120579372	120580372	+	862.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 3 of 5)	intron (NM_133796, intron 3 of 5)	1748.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	4.95010572052148	4.89466694546319	5.3155959114572	4.79341942760902	5.13285594360624	4.77028572118349	-0.288418204570015	0.481609272592677	0.825159653544888
Merged-chr18-32398813-2	chr18	32398313	32399313	+	645.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-20529.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.07276759540477	2.93145678226278	3.02841570476374	3.03862167497904	2.95808434336642	3.32347486570788	0.433870204682534	0.521528108366094	0.84708604060785
Merged-chr7-16243619-3	chr7	16243030	16244030	+	883.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	624.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	6.48625319272682	6.60112127557368	6.75249588117217	6.76423439446487	6.90694261818695	6.82593491826553	0.354097442328569	0.168308000573161	0.544820987957296
Merged-chr4-41589944-3	chr4	41589446	41590446	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	20152.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	2.68941189409124	2.65948072764493	2.83240678404611	3.2186541786737	3.21446228080376	3.26493834259704	2.67296307012034	0.000434375992658394	0.00940259042588961
Merged-chr17-71616131-4	chr17	71615608	71616608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175639)	promoter-TSS (NM_175639)	-107.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	7.76718359696311	7.99077296871945	7.67768354552887	7.6780541184978	7.89206034288349	7.65048741782586	-0.105714117923723	0.650703930447343	0.902668504553081
Merged-chr9-121717927-2	chr9	121717427	121718427	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1254.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	6.49121538346056	6.58251466990476	6.34750391926667	6.54637406494779	6.58665902980773	6.34755846011877	0.0342669531582577	0.899484416073581	0.976646126949534
Merged-chr3-116594910-4	chr3	116594399	116595399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289571)	promoter-TSS (NM_001289571)	-12.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	6.79740733492778	6.87654652953224	6.73952160869466	6.84246816718491	7.19055144206391	6.88976249170751	0.282630246421248	0.276240504528493	0.673585157097843
Merged-chr1-80671945-4	chr1	80671438	80672438	+	743.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-6586.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.27675273714802	4.01483780620427	4.50231914527278	4.29275225409193	4.05176685615565	4.4901515297951	0.0270316776176973	0.95653158698642	0.989887454023164
Merged-chr6-7738071-4	chr6	7737564	7738564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13D5|LTR|ERVK	-44882.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	3.75085026549273	3.97178263465656	3.81303738579073	3.78416833980509	3.77939180481802	4.02756016378047	0.0310226155421456	0.952878090551078	0.989332436906667
Merged-chr11-121753198-1	chr11	121752698	121753698	+	560.0	f0_balb.idr	Intergenic	L1MEg|LINE|L1	50771.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.94708489735869	5.07860810539316	5.04450347552022	5.09274006881484	5.07595587207131	4.96628847977202	0.0563182633403053	0.877847705603912	0.971748379457442
Merged-chr3-8746844-4	chr3	8746357	8747357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79819.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	7.62561942928323	7.98479454372244	7.26827588192293	7.58480200738903	7.70738428543212	6.90150888351793	-0.308531427948602	0.338684881730161	0.728588578553954
Merged-chr2-57239301-4	chr2	57238820	57239820	+	838.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010274, intron 1 of 16)	intron (NM_010274, intron 1 of 16)	938.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	5.26647606768743	4.92919635986684	4.94546713379965	4.79895473323512	4.99467345036946	4.97436677190429	-0.290974660762717	0.453824283980592	0.809979841654596
Merged-chr17-70851864-4	chr17	70851369	70852369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-135.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.89452452413582	8.98727287844685	8.52329262169241	8.58284707384237	8.99119688860139	8.21859642561386	-0.241143985345081	0.382638578502739	0.764118986456982
Merged-chr9-44089053-4	chr9	44088577	44089577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	4157.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	7.48918297330796	7.61331070529158	7.21979435688734	7.10730323695658	7.10985557665207	6.8818286500707	-0.618551994471874	0.0140940612286179	0.127402351625295
Merged-chr15-97963593-2	chr15	97963085	97964085	+	885.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-644.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	5.72731795012978	6.05552889126425	5.844637413839	5.93628084365619	6.12950683074491	5.69409480078603	0.103948733051407	0.748128505516958	0.936880860325556
Merged-chr17-7915083-4	chr17	7914564	7915564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10936.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.22768684262336	5.42941865521805	5.35114822879641	5.53684550345766	5.41897315096319	5.50357380513314	0.282364280189047	0.399894524280143	0.776248940201881
Merged-chr17-5783758-2	chr17	5783258	5784258	+	684.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14899.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.58965288358834	5.43744222170372	5.46309274353329	5.26337171084206	5.35877521910332	5.60872687999666	-0.175280146531747	0.605883927993515	0.8836723261728
Merged-chr4-62519072-2	chr4	62518572	62519572	+	863.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008525, intron 1 of 11)	intron (NM_008525, intron 1 of 11)	837.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	3.43639251077475	3.29162522040064	3.70845251724257	2.90391948158368	2.8177371188863	3.09601901649429	-2.56984832479559	0.000491717376092451	0.0103713103751332
Merged-chr6-129472171-4	chr6	129471596	129472596	+	929.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	683.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	7.3394288531209	7.29562623365153	7.3652091668408	7.50050878905299	7.87942847794876	7.19769955080189	0.346901722351533	0.197687268864211	0.585816672731807
Merged-chr7-102333861-1	chr7	102333361	102334361	+	560.0	f0_balb.idr	intron (NM_009287, intron 1 of 11)	RMER6A|LTR|ERVK	66037.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	3.78804280907823	3.84262487881479	3.76575420158134	3.61651730121201	3.69323111730988	3.62376023574648	-0.514347770835941	0.336851200415636	0.726861060604748
Merged-chr6-134927284-5	chr6	134926826	134927826	+	945.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1766.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	5.81027393263726	5.66606364719374	6.08015400091616	6.25161915169175	6.45378079037674	6.37836087924521	0.880902331724685	0.00325355119174626	0.0447867397511415
Merged-chr1-156684238-3	chr1	156683731	156684731	+	998.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145413, intron 7 of 7)	LTR41B|LTR|ERVL	-9892.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	4.20046045065527	4.10525898749168	3.78442448817365	3.25545218645587	3.38325992585847	3.32900493611129	-2.64187061838569	3.44359272088091e-05	0.00115724742778295
Merged-chr15-79690609-4	chr15	79690116	79691116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013818)	promoter-TSS (NM_013818)	-280.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	6.8109470768178	6.71728543616736	6.48348485524777	6.87891365286843	6.94942777341005	6.7671005213501	0.288655881018076	0.2686213318072	0.665858598184161
Merged-chr15-58988977-4	chr15	58988473	58989473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55163.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	7.60060084113377	7.69526225100496	7.33550092448314	7.0810958025342	7.20765466973032	6.76180832463293	-0.766570568282434	0.00358981782502999	0.0480768648937865
Merged-chr9-58271358-4	chr9	58270853	58271853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18189.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.5998409986001	6.41408667921028	6.17861420730099	7.02623785416969	6.98731606266196	6.67096174692806	0.774460436163991	0.00624464890800149	0.0718281374532745
Merged-chr1-38129226-2	chr1	38128752	38129752	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001359288, intron 1 of 25)	CpG	414.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	7.31068963687283	7.01690858661914	6.51038025812316	7.39302489034622	6.54463902813085	6.83092824703223	-0.0289767935484523	0.934324496508089	0.985707838096286
Merged-chr4-141734481-1	chr4	141733981	141734981	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-11062.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	3.81459256973885	3.9685563392725	3.94760963729035	4.05033347939077	4.06284460804437	4.4117138173636	0.776386952190247	0.122975523083467	0.469148413250216
Merged-chr2-75733424-4	chr2	75732945	75733945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28782.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.60535654385065	7.35936513907348	7.38244338121524	7.76134857573662	7.80458766325176	7.33760071073265	0.298180394153854	0.239182298433124	0.635962973481514
Merged-chr10-85917076-4	chr10	85916545	85917545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302886)	promoter-TSS (NM_001302886)	-59.0	NM_001302886	72843.0	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	6.65122078209713	6.84493838106736	6.46791547653529	6.81429075674969	6.42622117390241	6.61670785531389	-0.0741797498377303	0.792934688022913	0.950137663930683
Merged-chr1-172632627-3	chr1	172632119	172633119	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026725, exon 1 of 2)	exon (NM_026725, exon 1 of 2)	355.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	8.06237574227363	8.05923173497289	7.8275079468077	7.96627351126671	8.19846798037962	7.87509643506143	0.0495469540598061	0.828571280790089	0.959833682782168
Merged-chr11-59526876-4	chr11	59526373	59527373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14696.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	6.49774103586908	6.41241273585547	6.68173955276795	6.09513219691711	6.72393545352628	6.84212939579329	0.099379049954796	0.754632938498534	0.939008487312488
Merged-chr3-79287311-4	chr3	79286801	79287801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-58075.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	7.93881324479422	7.9323000237814	7.48460674236301	7.58422546039831	7.39535350094386	7.61150261700646	-0.406030557201731	0.101982811660147	0.42592499918641
Merged-chr5-95935227-4	chr5	95934722	95935722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21717.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	5.73477338855142	5.90104896749049	6.06524280876631	5.44865854317455	5.42385858206475	5.95624682663791	-0.513173044428405	0.137988322030089	0.496485603418127
Merged-chr10-8842518-2	chr10	8842018	8843018	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	ORR1F|LTR|ERVL-MaLR	43552.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.62383526945633	5.20949238859104	5.15519108170058	4.95062425305879	5.15311446142157	4.92665774918138	-0.678905209121581	0.0786801988596461	0.370609792624593
Merged-chr7-67973640-4	chr7	67973141	67974141	+	872.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	21384.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.35174384817727	5.37053855556575	5.33380473313581	4.52963923627436	4.5075306395954	4.61479164426314	-1.79524422092031	3.11957502686382e-06	0.000146734651687555
Merged-chr2-144005964-2	chr2	144005464	144006464	+	856.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	5299.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	5.02404287657541	4.98440174061132	5.17904544446274	5.35397647725636	5.07768886143678	5.30479173965517	0.38801087316985	0.287234849253989	0.684545951100586
Merged-chr9-118783387-2	chr9	118782887	118783887	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 2 of 13)	intron (NM_001113514, intron 2 of 13)	71695.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.465960995066	2.58301561660923	2.79033168695182	2.58543586836158	2.18445462575491	2.3594260262967	-1.42307595190345	0.11629278211125	1
Merged-chr3-88140974-5	chr3	88140472	88141472	+	835.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1400.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	6.51821313618841	6.78237603981776	6.90009102591405	6.23695368532918	6.36398282329293	6.79278410627674	-0.416829349744968	0.164234492850569	0.538525523372876
Merged-chr19-7012640-2	chr19	7012140	7013140	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362399, intron 6 of 14)	B4A|SINE|B4	6829.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	3.12988449845008	3.08512638482336	3.59790251191028	3.39526203142374	3.40965601550802	3.56782673489753	0.674579173534655	0.297524233344081	0.694195401494427
Merged-chr16-30603621-2	chr16	30603121	30604121	+	664.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177632)	TTS (NM_177632)	3898.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.67643304503331	4.72503093337964	5.17740148927473	4.89206611773236	4.75259277633044	4.76618841084679	-0.137088589985042	0.741539103730446	0.934868190792048
Merged-chr15-9131180-4	chr15	9130661	9131661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9293.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	8.13315975888981	8.25851247017172	7.99305091789072	7.80992435546324	8.27645367565697	7.71443577749609	-0.236856020354448	0.354530944226516	0.74168645124508
Merged-chr12-17881767-4	chr12	17881227	17882227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	190918.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.06769415572066	5.14191349307569	5.66528690209226	5.56506124544212	5.39881311282466	5.75065695557901	0.516452117564408	0.171358850708303	0.549373015709966
Merged-chr2-158160099-4	chr2	158159572	158160572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	7.16812560220539	7.26389249178916	7.11976546039374	7.44736098689677	7.58535909395631	6.99989107493276	0.284863014429165	0.282139640508165	0.680038097659561
Merged-chr5-145113476-2	chr5	145112976	145113976	+	794.333313	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	-780.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	3.59140855633724	3.49972137093931	3.77697153625579	3.48549974227988	3.29987425036235	3.59753328066698	-0.592676652008624	0.312058084418613	0.706880086573454
Merged-chr12-80814042-4	chr12	80813548	80814548	+	992.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	23516.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.48040019487639	6.6329131035413	6.37285144639494	6.59519921070317	7.11456926385779	6.65241023944682	0.497588615070768	0.0891418910208738	0.396669258680404
Merged-chr4-140964217-4	chr4	140963722	140964722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	2951.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	7.01025648551216	7.11039086116047	7.30456376703	7.14177265010994	7.55473751791302	7.21258762687623	0.272676097703221	0.293902471151818	0.690457148203017
Merged-chr3-126693570-3	chr3	126693068	126694068	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	96617.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.40259230797067	6.69633363942782	6.38816989688864	6.59690147726765	6.75554596741534	6.36899216946361	0.134261688532834	0.637576617227977	0.89735407749672
Merged-chr17-50499580-4	chr17	50499066	50500066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9981.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	4.28903427916843	4.76714956386333	4.42642812367728	5.10963867131113	5.28897189284422	4.68016173091207	1.22505621792896	0.00727562898892655	0.0803971496561223
Merged-chr5-135188147-4	chr5	135187667	135188667	+	904.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	CpG	844.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	6.94313823704601	7.33397129796567	7.31685583245412	7.30183233542421	7.25541222994898	7.58305793575463	0.258895508159105	0.320397674114316	0.714253897125111
Merged-chr8-14888749-4	chr8	14888227	14889227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_012000, exon 1 of 3)	5' UTR (NM_012000, exon 1 of 3)	191.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.49283498303895	8.60730474843023	8.23829157300952	8.36984442986144	8.5162206045617	8.0999601613467	-0.158074682341798	0.502203515268084	0.836366262631032
Merged-chr8-104247953-4	chr8	104247485	104248485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 1 of 8)	intron (NR_045642, intron 1 of 8)	573.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	8.82307626772786	9.19810276533115	8.75616348980103	8.93352320400405	9.22034303544535	8.51657206292402	-0.0208692527336514	0.937425833506609	0.986057836872162
Merged-chr11-46457927-4	chr11	46457425	46458425	+	930.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 2 of 6)	RMER6B|LTR|ERVK	2994.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	2.91431030753403	3.03115623913783	2.92494735182334	2.93938457915028	2.72843618563299	3.05663516790181	-0.244349885775995	0.729278489537531	0.930601789377265
Merged-chr6-125572671-4	chr6	125572185	125573185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011708, intron 6 of 51)	MTD|LTR|ERVL-MaLR	19737.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	7.67815444872315	7.96800513296194	7.63120522748047	7.69523102278444	8.19745013913297	7.82195464309216	0.225378663534016	0.3806996694629	0.762737668167609
Merged-chr1-171841569-3	chr1	171841081	171842081	+	831.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	1884.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.55073450237125	7.85422079598743	7.2934605851829	8.09679433304836	8.3480240731398	7.63752353391352	0.67726678560063	0.0188876031631724	0.155499046960775
Merged-chr19-40641049-4	chr19	40640567	40641567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-18703.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.78564958533037	6.69437729409256	6.59763720929841	6.31879349117292	6.25595312947102	6.51996053495603	-0.5454879439165	0.041603105484064	0.255062467163282
Merged-chr6-136814926-4	chr6	136814460	136815460	+	822.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021714, intron 11 of 11)	B2_Mm1a|SINE|B2	6712.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.24170844367483	4.23615222333803	4.42395733530402	4.16164923200045	3.93804735209955	4.28106025216602	-0.482713094731044	0.3120677470939	0.706880086573454
Merged-chr15-59552654-4	chr15	59552172	59553172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-95982.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.19032063440761	5.99782984395434	5.92250288449758	5.80170914498927	5.90922981543437	5.64209023397618	-0.438758462025314	0.155558814631355	0.525328914111153
Merged-chr13-119754850-3	chr13	119754375	119755375	+	727.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175538, intron 1 of 3)	intron (NM_175538, intron 1 of 3)	1007.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	2.61464701598657	2.63545245875172	2.79385516477516	2.74181727319995	2.46940084825586	2.5545763408884	-0.492469781993432	0.52626481806146	1
Merged-chr9-114688698-4	chr9	114688197	114689197	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146229)	promoter-TSS (NM_146229)	-134.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	7.07780478509349	7.2713586879606	7.05792669797995	7.07855185655216	7.10154771304546	7.1787531617768	-0.039078085378212	0.870359956588994	0.970065609722504
Merged-chr5-65880740-3	chr5	65880247	65881247	+	582.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17178.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	4.90892706528478	4.49705393349365	4.85753188103609	4.88451190588863	4.62395930241837	4.88645491791424	0.0773157993827559	0.854195331275049	0.965960851905444
Merged-chr11-120041054-2	chr11	120040586	120041586	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	695.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	8.61200997781418	8.9483943745431	8.44917494873866	8.33049376987387	8.68600829683274	7.75668368905329	-0.507688563270399	0.0899318871949524	0.398609781123968
Merged-chr4-145019447-3	chr4	145018910	145019910	+	980.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	126273.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.65397717517582	6.13444111650842	5.54290916120579	4.97738226879372	5.15991689425316	5.19453146757109	-1.35037066977888	0.00026910915484913	0.00637768002184175
Merged-chr2-22777620-1	chr2	22777120	22778120	+	664.5	f0_balb.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	3293.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.62849755976745	4.64175026153556	4.77714944492652	4.74664451527053	4.78946790817511	4.6468626879793	0.131406043454045	0.743188975166255	0.935528839299546
Merged-chr9-110667442-4	chr9	110666976	110667976	+	851.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	10973.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.76897692403121	4.78474989770624	4.82874550598148	5.49002531160812	5.41902620670784	5.01255250292787	1.14371430011246	0.00270805085912611	0.0389375316893322
Merged-chr16-18425410-2	chr16	18424910	18425910	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111062, intron 1 of 5)	MER67A|LTR|ERV1	-1007.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	5.88478768309192	6.21047926094903	5.87210565793427	5.8857891062901	6.07965329943883	5.80520914382896	-0.119122415506635	0.70449181344947	0.922442166763761
Merged-chr6-113713703-2	chr6	113713203	113714203	+	622.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3989.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	4.215230273459	4.34102954152776	4.27580842438073	4.27288379786247	4.2326391171263	4.10831014046081	-0.186241603097644	0.685113118438582	0.916158929855081
Merged-chr15-89182532-5	chr15	89182034	89183034	+	801.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027081, exon 20 of 20)	3' UTR (NM_027081, exon 20 of 20)	-1746.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	4.16270632532347	3.952333221313	4.23334939196406	3.95315912837435	3.79635084461376	4.2143116040803	-0.377098446520336	0.460606656426119	0.814564932348408
Merged-chr5-88981816-4	chr5	88981318	88982318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-46148.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	5.29907355987292	5.12444783673216	4.99148504978787	5.24441732369096	5.15373167989456	4.94355722446337	-0.0525899579961927	0.887746592003428	0.97386444861465
Merged-chr7-101848090-4	chr7	101847584	101848584	+	969.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303239, intron 2 of 5)	ORR1B1|LTR|ERVL-MaLR	-2753.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	4.8841671680531	5.05920172604005	5.11616326987597	5.3022275156898	5.20224355994647	5.39715140619724	0.574468511499994	0.111210064996744	0.445472081717353
Merged-chr11-44544241-4	chr11	44543765	44544765	+	838.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 4 of 5)	RSINE1|SINE|B4	24888.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.18036741255949	5.0588162024326	5.21428604706673	5.29209982457727	5.28032771073463	5.27802686909414	0.275308849746246	0.428950119208538	0.795570481157701
Merged-chr5-90020300-4	chr5	90019784	90020784	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136950.0	NM_001081401	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	3.93170319840806	4.14412110215255	3.878633144963	4.084490242626	4.16038354389958	4.36783141993669	0.590829347279464	0.233863169981769	0.630121355137759
Merged-chr6-70793477-2	chr6	70792977	70793977	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1302.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	3.69561085631849	3.73882374555591	3.89659611880195	3.9210552367612	4.08523696982114	4.06070711635961	0.78539578004109	0.123821655289229	0.470970574753435
Merged-chr2-59393366-4	chr2	59392861	59393861	+	960.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-6679.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.11640832783293	5.21961217597531	5.58932723313229	5.2500678358189	5.54973178558833	5.57247225392543	0.30073820828315	0.4103902566779	0.783241260554492
Merged-chr2-15054643-2	chr2	15054143	15055143	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	229.0	NM_001165941	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	7.34314673874523	7.5776977121613	6.97889364024636	7.32813182081021	7.5141580547666	6.97836219754997	-0.0453004193033978	0.875039225988813	0.970842352575132
Merged-chr8-70608403-4	chr8	70607916	70608916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133772)	promoter-TSS (NM_133772)	-102.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	7.43176259862845	7.25188035643859	6.85902828023352	7.50851856924691	7.5015494624002	7.1867297162843	0.295949702786211	0.27709123206082	0.674343034039447
Merged-chr8-79450369-3	chr8	79449866	79450866	+	845.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50898.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.12910583332139	4.33606230607817	4.39356759757127	4.3334187045229	4.35395207525437	4.19151067421826	0.0367873432527885	0.936139974607681	0.986034863960057
Merged-chr6-84027821-4	chr6	84027331	84028331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	8445.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.92684543657188	4.7438277519365	5.0517821809806	4.99305984666388	4.85696531912632	5.01450672067437	0.10151640322498	0.79227925741646	0.949929758256028
Merged-chr11-69669953-2	chr11	69669453	69670453	+	847.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 4 of 10)	intron (NM_001159375, intron 4 of 10)	2470.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	5.27368530956269	5.01470217104866	5.37987742767628	5.57563069360349	5.39177534764294	5.4720875631876	0.507904609649086	0.148255558200996	0.513762236213799
Merged-chr7-30244672-3	chr7	30244177	30245177	+	741.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152437, intron 22 of 32)	intron (NR_152437, intron 22 of 32)	-7912.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	2.49819690978289	2.42568853010397	2.77093298923505	2.31366536031651	2.47398097121912	2.72750708173138	-0.326903757632191	0.697134614053313	1
Merged-chr7-141491105-4	chr7	141490602	141491602	+	979.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252588, intron 4 of 7)	intron (NM_001252588, intron 4 of 7)	14722.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	4.41568274899378	4.30637985485478	4.27922174864502	4.00260326964007	3.91993889002655	4.16560868794805	-0.88624764813683	0.0616770571323917	0.322181214757489
Merged-chr8-40598550-4	chr8	40598072	40599072	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040699, intron 3 of 13)	intron (NM_001040699, intron 3 of 13)	36220.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.13349239217195	5.43164076365858	5.51675450281962	6.60977460615851	7.03199753786702	6.80866111874922	2.52833053384633	1.46379963648932e-15	4.44524964062056e-13
Merged-chr8-92855853-4	chr8	92855345	92856345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	512.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	7.71654718604051	7.75614626746266	8.14263397057837	8.06697624496462	8.17971172349609	8.0495973862187	0.316312006265701	0.178079522206675	0.559118345790044
Merged-chr14-32513516-4	chr14	32513025	32514025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081221)	promoter-TSS (NM_001081221)	4.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	6.26788861074134	6.52040867415913	5.9022990625571	6.02673492044114	6.04618098008919	5.68843478854969	-0.555033320397232	0.0935029702446999	0.407254771153737
Merged-chr9-118693417-2	chr9	118692917	118693917	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-18275.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.58016424049303	2.54195003301857	2.85340249469748	2.65608999410541	2.49719548290164	2.68848898984089	-0.261520091827573	0.7357849772142	1
Merged-chr9-119984656-2	chr9	119984156	119985156	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153287)	promoter-TSS (NM_153287)	86.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	3.87155020837069	3.90593662847661	3.9058499238236	3.77803924089533	3.73360074023634	3.87636354832206	-0.325255967628409	0.526018565377079	0.849272421520383
Merged-chr2-4570536-4	chr2	4570030	4571030	+	907.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	10776.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.88349249712528	5.69747600120065	5.63131671555074	6.10323057965936	6.0322776350747	6.06943181954642	0.560929349972204	0.0626988987017107	0.325597576182484
Merged-chr14-75188673-2	chr14	75188173	75189173	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	52248.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	4.85848765390933	4.93024001280965	5.30729846190058	5.23725076850409	5.04408797427217	5.28105840443833	0.317237677444113	0.40826712257121	0.781982251625038
Merged-chr17-83265477-2	chr17	83264977	83265977	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50194.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	1.77665998475125	1.98121695474761	1.87736173690787	2.03159599132009	1.91143408269646	2.15654749809715	1.23560989350245	0.214862693403157	1
Merged-chr7-102224672-2	chr7	102224172	102225172	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_111938, intron 2 of 4)	intron (NR_111938, intron 2 of 4)	1644.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	3.8642368264997	3.96580486859745	4.34530876820535	4.38539516028057	4.42215751202485	4.68232589053354	1.17809340145162	0.0161438819543174	0.139723333644148
Merged-chr1-189807127-2	chr1	189806640	189807640	+	611.700012	f0_c57.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	78872.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	2.20159521125048	2.18013931639514	2.20684170349352	2.79717757045485	2.53560573328515	2.56212891609878	3.3236351227755	0.00105437762096422	1
Merged-chr15-73724700-4	chr15	73724202	73725202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-95.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	6.98202425502768	7.09376567917414	6.91476870989732	7.12348181130561	7.10060687144077	6.9869904590901	0.108916299920263	0.651190436152524	0.90274227832685
Merged-chr7-16005165-3	chr7	16004660	16005660	+	947.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5665.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.81662368198443	3.88348955895062	3.92705752091838	3.96908433151646	3.75207677563997	3.89769313766449	-0.00771778216443705	0.987993886573204	0.997268471577753
Merged-chr19-32266372-2	chr19	32265872	32266872	+	639.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	B4|SINE|B4	-55359.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.36606577040631	3.48666889881377	3.8161081565459	3.31141863530521	3.26527132197373	3.26579865339122	-1.07624981044868	0.0835001080871337	0.382519080921008
Merged-chr5-31728292-2	chr5	31727792	31728792	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	30242.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.07509442249455	4.94006957183669	5.06247875546049	4.66518404217885	5.27335067404372	5.02338881108638	-0.00737764310503577	0.985540821597864	0.996910741481358
Merged-chr2-128711017-4	chr2	128710510	128711510	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	12095.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.62813846135142	6.83866871256622	6.73077858073642	6.31658666731219	6.72287644586422	6.30799937450543	-0.409543667262418	0.152164774819437	0.520121865964577
Merged-chr17-43060266-1	chr17	43059766	43060766	+	557.0	f0_balb.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	43711.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.90032704179095	7.10350886575418	6.88931707754856	6.25149752583058	6.23388014371254	6.02835684116556	-1.25912608561691	3.4283347029e-06	0.000159099204661965
Merged-chr14-61687896-4	chr14	61687395	61688395	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5522.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.63084163652871	5.92209046952437	5.60397736976312	5.97194830592937	6.25814840609809	5.69650108341376	0.487123026124669	0.149539917119936	0.515961080764456
Merged-chr7-140122947-2	chr7	140122447	140123447	+	630.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-2710.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	5.2354783614027	5.20393975821041	5.71663012573593	5.66373513467837	5.68261693426343	5.70318281913158	0.554458449886855	0.112620128928065	0.448338447691312
Merged-chr10-80826440-4	chr10	80825948	80826948	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027656)	promoter-TSS (NR_027656)	-208.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	8.18836293869805	8.09143852486675	7.99710122368914	7.92645910441341	8.14234968089661	7.77701402678998	-0.187183411116446	0.410199985931884	0.783116615634315
Merged-chr4-117915144-4	chr4	117914643	117915643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-144.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	6.71966959656567	6.9380912248183	7.05441047820998	7.07375187239156	6.76252900398041	6.91219318175385	0.0209561337987427	0.936525402951946	0.986037792257163
Merged-chr17-34648889-2	chr17	34648404	34649404	+	867.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 4 of 17)	intron (NM_017406, intron 4 of 17)	1758.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	4.20381495846836	3.61918045417113	3.97631564211208	3.76122877828848	3.8510799906395	3.84752060278509	-0.420492166499779	0.447705297825184	0.806631496902278
Merged-chr2-152686982-4	chr2	152686489	152687489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-159.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	4.64666111373139	4.83974804245754	4.91219636186438	5.0576726810519	5.06672096573154	5.0474465791071	0.569956610919628	0.134035511771126	0.489430895003259
Merged-chr7-116456488-2	chr7	116455988	116456988	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-13030.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	4.9450992322731	4.55306413098177	4.63945075113828	4.46721797336954	4.53339848077391	4.49601407473888	-0.547047358764893	0.202708776926116	0.592593609614878
Merged-chr14-31380464-4	chr14	31379951	31380951	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37226.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.79335747094373	6.50377394635982	6.585787954312	6.93063630580296	7.27732933602642	6.95692909167566	0.67546144388876	0.0121806360340933	0.115396375170766
Merged-chr5-102010539-4	chr5	102010037	102011037	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	MER3|DNA|hAT-Charlie	59384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.23990621750215	7.36725477412925	6.92283554744125	7.28403284561729	7.30401906748194	6.92128446714576	-0.0137154577671596	0.959247541043117	0.990174309444982
Merged-chr1-85299550-1	chr1	85299050	85300050	+	636.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	-28984.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.58489145900651	2.60805994125522	2.9478739441436	2.29195911014749	2.19917246883212	2.9656497659746	-0.753695273245492	0.731885281176984	0.931586031668086
Merged-chr3-86999806-2	chr3	86999334	87000334	+	587.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007639)	promoter-TSS (NM_007639)	-494.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	7.03750362955946	7.4482214790824	7.24880688511087	7.12103623001925	7.49303318797271	7.17389595793755	0.0345406518825894	0.896350490424355	0.975806926657291
Merged-chr19-55831314-2	chr19	55830814	55831814	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-64007.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.44832719076951	3.5435678050408	3.22544856631495	3.4788981643383	3.21777898825701	3.35862866742212	-0.252197072323065	0.684731597658026	0.915957882425817
Merged-chr11-61659635-2	chr11	61659135	61660135	+	580.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	6314.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	3.02853775984422	3.19471815956478	3.48470743173612	3.07252724413726	3.19797085103719	3.3482023415799	-0.142747487378123	0.829179632751468	0.959990063227229
Merged-chr1-152548172-4	chr1	152547676	152548676	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	77041.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.05203958732098	4.81350407695531	4.97019261462797	4.83547859529913	4.80555759187561	4.96449293012558	-0.185058495104637	0.63054431233281	0.894734411238057
Merged-chr3-5575928-1	chr3	5575428	5576428	+	1000.0	f0_balb.idr	intron (NM_008994, intron 1 of 5)	CpG	320.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	8.01983007815467	8.28194745028581	8.01398722831245	8.17816090901769	8.24173917549735	8.13400311190742	0.101480823886241	0.640532251631206	0.898483031109382
Merged-chr4-93520945-4	chr4	93520433	93521433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-185422.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	4.42882496003587	4.64606435477688	4.65398521439085	4.61470901703009	4.41896414527056	4.64164552107209	-0.0555727463888686	0.896238388747287	0.975793383188212
Merged-chr2-158121876-6	chr2	158121431	158122431	+	930.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 10 of 12)	(GA)n|Simple_repeat|Simple_repeat	24461.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.63550974629179	4.39049142647411	4.73983900037414	4.54162368603469	4.28470354696242	4.90821844664813	-0.000214882012828541	0.999630070556056	0.999920050950963
Merged-chr5-90247831-3	chr5	90247339	90248339	+	788.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23843.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	5.34732391094799	5.09422076749984	5.51264991212651	5.45401732868406	5.42733183588112	5.49136218842035	0.268977555619042	0.440316528182993	0.801751735698024
Merged-chr4-128785133-4	chr4	128784622	128785622	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 6 of 8)	intron (NM_001081098, intron 6 of 8)	20990.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	6.04910367713418	5.93577215513899	5.41623663965395	5.79752692238196	5.89643918581451	5.23195733276319	-0.272881975412088	0.480743852537408	0.82478653093858
Merged-chr1-170165101-4	chr1	170164611	170165611	+	984.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 2 of 10)	MTEa|LTR|ERVL-MaLR	9853.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	4.03074478594144	4.14613433272839	4.01036875791907	4.1392970261424	4.36818163417873	4.08034712215913	0.406664344948493	0.400167287550838	0.776372018141352
Merged-chr15-84325959-4	chr15	84325396	84326396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	-223.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	6.85064716512178	6.65347083534548	6.3755757655046	6.80126207425094	6.72317362077488	5.91060822297492	-0.154822613560689	0.658387223988662	0.905014667687917
Merged-chr13-34652645-4	chr13	34652143	34653143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105041)	promoter-TSS (NR_105041)	38.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	7.86058035734143	7.97234329932114	7.99913742369592	7.65990969901619	7.53039043982619	7.49959529543629	-0.543661857246264	0.0128741276619216	0.120146973361729
Merged-chr12-54657371-2	chr12	54656871	54657871	+	631.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-799.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	3.68069437649994	3.49001506582958	3.57003528848135	3.60457839264381	3.5080599017821	3.74313223733492	0.113805574026728	0.839630138961694	0.962784121274377
Merged-chr4-132538382-2	chr4	132537882	132538882	+	842.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	2823.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	3.89260860917662	3.67530699204148	3.90300608686818	3.91420682153022	3.68730183826804	3.97164991070773	0.10089680167955	0.849244363422266	0.964611884188925
Merged-chr6-28623188-4	chr6	28622703	28623703	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142855.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	5.69718162563576	5.62883242154556	5.45919558244266	5.74992575994344	5.84467481112689	5.32716849129466	0.127911324290454	0.710881113152492	0.924511716032697
Merged-chr6-54116447-4	chr6	54115940	54116940	+	941.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	L3|LINE|CR1	76508.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	6.26922707849688	6.50723214406994	6.09236237345075	5.53217867657268	5.7816952599922	6.04253345493833	-0.88658688049857	0.00597445017496153	0.0695843843992769
Merged-chr1-65068725-2	chr1	65068225	65069225	+	779.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4807.0	NM_007775	12966.0	Mm.491115	NM_007775	ENSMUSG00000025952	Crygc	Cryg-5	crystallin, gamma C	protein-coding	4.85098728144483	5.08468753838685	4.485651084946	4.5514493816213	4.45609582628583	4.7638337231711	-0.592288118871233	0.17963473352429	0.561125246422419
Merged-chr19-53554621-3	chr19	53554103	53555103	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25285.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	2.92713989500734	2.9780944477644	2.90076042212144	2.76824811117251	2.55931823187997	2.85250577533467	-1.11108790315417	0.136189580439997	0.493146752362964
Merged-chr1-173879433-3	chr1	173878928	173879928	+	947.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	759.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	8.0822841240501	8.5046306399823	7.67186127471871	7.43162936843538	7.80843878425255	7.05659165554163	-0.941386155611725	0.00326068427658364	0.0448454574026399
Merged-chr1-43828633-2	chr1	43828117	43829117	+	566.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-909.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	4.95574977421095	5.10515683226147	4.87248319144189	4.87965662009125	5.09519492739695	5.0115971629338	0.0301710598095816	0.936504751577631	0.986037792257163
Merged-chr16-55802677-3	chr16	55802166	55803166	+	613.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19472.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.92773281711379	5.8742438538321	5.89093961678426	5.58970869051779	5.81653727048111	5.67111889411817	-0.350820233149295	0.254189069017064	0.651179145391095
Merged-chr15-83452119-1	chr15	83451619	83452619	+	723.333313	f0_balb.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-4239.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	2.99478083275246	2.91597575427717	2.94896637802924	3.14711754364423	2.91656791012901	3.30754868743066	0.781376630702765	0.2539895575085	0.651117231535132
Merged-chr15-34068086-1	chr15	34067586	34068586	+	920.0	f1_balb.idr	Intergenic	B1_Mur4|SINE|Alu	-14633.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.4275763974795	3.63771204220463	3.80199708851578	3.63209756866909	3.55410583184652	3.77375300364466	0.0896424993758749	0.87447570522262	0.970754540400126
Merged-chr18-67201993-1	chr18	67201493	67202493	+	775.0	f0_balb.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-3366.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	4.99506561557502	5.22416715791144	5.03924153577524	4.78626448605661	4.82135485919561	4.60062374564171	-0.76856045627244	0.0503073007315705	0.285420010859984
Merged-chr13-110538450-5	chr13	110538025	110539025	+	905.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143481.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.29983495945331	3.18743421873889	3.23840919948064	3.07653712069181	2.88843157736295	2.95174358450022	-1.22998130463435	0.0670440595660415	0.338479650848351
Merged-chr6-31183285-2	chr6	31182785	31183785	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	35189.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	2.72083994948643	2.84796318784007	3.08449095086082	2.68290433212467	2.53723692828589	2.4852425950112	-1.76023560953386	0.0305613101775902	0.211387268730679
Merged-chr1-173767040-4	chr1	173766543	173767543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008329)	promoter-TSS (NM_008329)	-124.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	6.68547668786019	6.84431977073555	5.95180035711209	7.08629064562193	7.32386148585086	6.86816477932629	0.843981623801769	0.013138727946083	0.121634098235167
Merged-chr9-61707905-3	chr9	61707408	61708408	+	915.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206602.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	3.9496683392561	3.93705071697544	3.89183710216989	4.10182637923474	3.78482839323754	3.6931987533532	-0.162646010923896	0.758031241747775	0.940045956799095
Merged-chr10-19551797-4	chr10	19551289	19552289	+	824.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40160.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.64223559372413	4.8358641457612	4.94429425114582	5.01131650515686	4.52790277747246	4.86689718554471	0.00661934811614516	0.987478636769055	0.997218304929226
Merged-chr18-34854648-2	chr18	34854148	34855148	+	874.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6559.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.26259374629584	4.50251497183856	4.42948625669674	4.98554085612473	4.63677923393768	4.85798563339648	1.02781053295203	0.0171457564738938	0.145741557327587
Merged-chr2-84562368-3	chr2	84561872	84562872	+	883.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-55499.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	3.22794236234678	3.59428288901899	3.34463547608605	3.14242928625138	3.23850685110227	3.3028771547932	-0.695628598683147	0.272222415432617	0.669543037120097
Merged-chr15-33263906-3	chr15	33263405	33264405	+	933.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176073, intron 3 of 7)	intron (NM_176073, intron 3 of 7)	142034.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	4.25149132336466	4.68516716787322	4.98006669952349	4.48531723217821	4.66725878306144	5.10501147808712	0.243812509657783	0.615241317039916	0.887866671887744
Merged-chr15-97663857-4	chr15	97663350	97664350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	41972.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.66757283423082	4.95819860152877	4.85742839499686	4.65508429922486	4.7903513831393	4.73294031975148	-0.237304522387143	0.554629457519892	0.862883680820358
Merged-chr1-84437757-4	chr1	84437269	84438269	+	802.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-153124.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	3.89830834688201	3.96067660481419	4.16917875687957	3.74011523271375	3.94184615970963	4.05864288751141	-0.273927979441517	0.594110166594826	0.87882660002802
Merged-chr7-101902476-2	chr7	101901976	101902976	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	intron (NM_001081679, intron 1 of 3)	1309.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	3.54053096641753	3.33940498449718	3.76163828436478	3.47624542670453	3.81481664015287	3.57514730037025	0.296302010837316	0.619060902375702	0.889605366990958
Merged-chr10-80986216-2	chr10	80985716	80986716	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038655, intron 2 of 3)	L1MB5|LINE|L1	15149.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	5.0310585178901	4.96623625222767	4.83869656718297	4.95735527959566	4.88701636339226	4.52103665211964	-0.307267900256527	0.449732599236461	0.808012616706586
Merged-chr6-145304244-1	chr6	145303744	145304744	+	805.0	f0_c57.idr	Intergenic	RSINE1|SINE|B4	53692.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	8.07625172800978	8.1870372019979	8.07452219426281	8.52040714286978	8.81731579967503	8.37871891769105	0.665453630415123	0.00326387238189932	0.0448795137620107
Merged-chr9-120881318-3	chr9	120880800	120881800	+	979.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	33950.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	4.24459070887931	4.37131832572364	4.45024301906465	3.35931893181751	3.22500333126541	3.44872328108972	-3.97601863811331	1.33320657115525e-08	1.17018409675829e-06
Merged-chr13-74009375-4	chr13	74008878	74009878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-41.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	4.95637243137078	5.23037368670418	5.01193022617329	4.72563750589043	4.38403095284599	4.52802017694599	-1.2063688732269	0.00348268100509799	0.0470128035483766
Merged-chr6-29522586-2	chr6	29522086	29523086	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4039.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	6.84548905535037	7.08166955140462	7.08075564601231	6.84299835236618	7.2395163914272	7.21104524927474	0.161331020610842	0.539110395662723	0.85576064580405
Merged-chr8-46811493-4	chr8	46810984	46811984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	71739.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	5.45777351482328	5.82634720519055	5.97113513252499	5.51840476864457	5.34801392714765	5.48287414272451	-0.587731021851768	0.0883749508743454	0.394628255465951
Merged-chr17-53586096-2	chr17	53585596	53586596	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	1970.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	3.86214364505513	3.92013466266221	3.71621877472517	3.93160999405586	3.88198493617882	3.89249344236408	0.186978856556484	0.715956160096559	0.926518401339303
Merged-chr18-65686331-2	chr18	65685831	65686831	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 8 of 8)	intron (NM_001361052, intron 8 of 8)	-11937.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.45381397628326	4.38676266473125	4.59553554381343	4.54224413577905	4.66015124919046	4.58121280041065	0.30694850904152	0.466322164351286	0.817498201823315
Merged-chr19-42639730-4	chr19	42639209	42640209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26903.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	2.85882230172321	2.66026636611963	2.85979870388663	2.72966163775189	2.77549795166335	2.81166133260526	-0.113789340508681	0.875025297062369	0.970842352575132
Merged-chr5-105064606-2	chr5	105064106	105065106	+	922.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11045.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	2.69485037592832	2.74470161778662	2.69783168335153	2.78224802828825	2.546209654081	2.95145578978714	0.268200253649172	0.723274573466168	0.929000340406704
Merged-chr4-141713814-4	chr4	141713310	141714310	+	889.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	RLTR30D2_MM|LTR|ERV1	9609.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	4.64778439834943	4.19497124548228	4.14436026059566	3.91772822467178	3.65951724525867	4.11850433124956	-1.30768949707368	0.0145183663493516	0.129743768359665
Merged-chr8-10849712-4	chr8	10849261	10850261	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32693.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.94150443409639	5.63311134960912	5.38424473087925	4.87184654441444	4.53015499857816	4.45850016894845	-2.19342255950938	1.37339367844263e-07	9.46788245201773e-06
Merged-chr14-103777582-3	chr14	103777081	103778081	+	986.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66120.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.57937427744407	3.48677258858525	4.00880565134151	3.4574195740249	3.28127752328301	3.55768332670668	-0.972251339455402	0.111186838581539	0.445419833321467
Merged-chr3-108890938-4	chr3	108890447	108891447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177091)	promoter-TSS (NM_177091)	-939.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	5.05136232258963	4.84509808889343	5.23155613957812	5.28869546138285	5.37359466148502	5.70318027561188	0.842312907304663	0.0242633413921366	0.183424326177483
Merged-chr8-25715437-3	chr8	25714931	25715931	+	815.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081269, exon 23 of 23)	3' UTR (NM_001081269, exon 23 of 23)	-4617.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	2.91511511268179	2.92569927255676	2.79849417562645	2.98232818583829	2.86593498806962	3.11271783366518	0.481864905643832	0.489024715496091	0.829458966651013
Merged-chr3-89393040-4	chr3	89392522	89393522	+	856.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	356.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	5.85957986462075	6.17072669533554	6.35065979675585	6.51810508795472	6.65722783621698	6.56937449037276	0.743058807211526	0.0106681691866593	0.105187465538991
Merged-chr8-56294576-4	chr8	56294074	56295074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008278)	promoter-TSS (NM_008278)	22.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.93026930949082	6.85698280282146	6.49548521431607	6.99761324755831	7.24277154487032	6.5555432741241	0.296113741914514	0.330880981284954	0.722226411767471
Merged-chr11-116615350-1	chr11	116614850	116615850	+	704.75	f0_balb.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8902.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	7.12931160353845	6.81424976427476	7.02823937494294	6.76321565790521	7.03358552205766	6.67141776065504	-0.235560518904001	0.380424117232681	0.762534569734688
Merged-chr2-166964988-3	chr2	166964490	166965490	+	821.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_111895)	promoter-TSS (NR_111895)	-273.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	4.21084509269698	4.06474838386829	4.17819824142908	4.22380762891227	3.88570284962696	4.41638532437972	0.0857566719649484	0.863979413965682	0.968269312109804
Merged-chr19-3387054-2	chr19	3386510	3387510	+	897.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1847.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	3.80841305546656	3.96224478068747	4.26095066147015	3.94010223390196	4.0216905320626	4.20052640296021	0.116619373158628	0.820105081240238	0.957462412479658
Merged-chr10-94960951-3	chr10	94960451	94961451	+	766.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16373.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.97383351847452	4.71140346160213	4.2895339604337	4.34047619850974	4.08327101959086	3.98898560720116	-1.40773358488686	0.00500114680471599	0.0612233961051653
Merged-chr6-38871919-2	chr6	38871419	38872419	+	680.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	4271.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	7.0385598527548	7.14094713324752	7.05087192497467	6.8699316037339	7.24013723185435	7.0958098791253	0.00517968578649427	0.983551914251693	0.996376635146826
Merged-chr3-95497843-3	chr3	95497338	95498338	+	692.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009709)	TTS (NM_009709)	-1372.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	3.38767877945395	3.39332031153968	3.19068964886763	3.23558203629698	3.02705394242286	3.32113328401234	-0.571090600874639	0.373255183992595	0.757119947091876
Merged-chr1-171130733-2	chr1	171130233	171131233	+	767.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 5 of 5)	ID_B1|SINE|B4	9072.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	5.62684468616326	5.58546951516637	5.50133433783922	4.91271508694953	5.11461587961156	5.45067327025982	-0.805244872951281	0.0258446692034789	0.190594797719096
Merged-chr7-100497551-3	chr7	100497049	100498049	+	686.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011671, intron 4 of 7)	intron (NM_011671, intron 4 of 7)	4191.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	5.48913613761957	5.2253953476739	5.45837595817026	5.22762179310004	5.1865777354805	5.43519674386638	-0.226309143402192	0.518854704476245	0.845497711286192
Merged-chr17-5806974-2	chr17	5806474	5807474	+	731.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7484.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.4626357744719	4.42723868643257	4.30287762051639	4.43999928149805	4.48380719066154	4.37121410149437	0.0818825795677819	0.850903110189027	0.964998582426176
Merged-chr15-50819617-2	chr15	50819117	50820117	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69432.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.47705970452723	6.52797736265041	5.95245026857969	5.80453875915222	6.01900716330199	5.68905016152417	-0.850928406727793	0.00955178118635391	0.0973762079091075
Merged-chr18-13007008-1	chr18	13006508	13007508	+	540.0	f1_c57bl6.idr	promoter-TSS (NM_153087)	promoter-TSS (NM_153087)	18.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	4.27045973553616	4.69336696407379	4.1504544066368	4.36029515922043	4.34905942377091	4.17060907016223	-0.269506026119851	0.579192420276355	0.872437416842052
Merged-chr10-96875903-4	chr10	96875404	96876404	+	943.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159864.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	4.51437934244949	4.65772542502789	4.92390799523863	4.3061721355192	4.0528819782118	4.56012089866037	-0.988481971732499	0.0350971775481056	0.2298837125257
Merged-chr10-75213271-2	chr10	75212771	75213771	+	728.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	881.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.1984944403738	3.85888600386913	3.93558603004556	4.64012022383879	4.17871757028176	4.2570637638834	1.00443907565605	0.0484761780507721	0.279316240097545
Merged-chr11-23211232-3	chr11	23210735	23211735	+	888.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44806.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	4.00471002773173	4.02848699073636	4.15436663532389	3.84455095240877	3.89328687548467	3.72904337296215	-0.702602381743185	0.16830861810694	0.544820987957296
Merged-chr14-77912308-2	chr14	77911808	77912808	+	693.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029495, intron 1 of 11)	MIRc|SINE|MIR	8069.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	5.35415238928554	5.65157848291913	5.71137362801765	5.70502617794918	5.47332613796437	5.84564288729473	0.180433947253277	0.596386919517192	0.879911021114935
Merged-chr10-88350036-4	chr10	88349545	88350545	+	946.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	7030.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	5.31531212249775	5.19016022357126	5.33201123811163	5.28763417286387	4.88269683874092	5.24081475385633	-0.283421701641076	0.444105372119697	0.804030822375159
Merged-chr15-81847968-2	chr15	81847468	81848468	+	909.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020507)	TTS (NM_020507)	10358.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.16075335066946	4.10424974604026	4.22048735585823	4.29226986164788	4.32989630276168	4.24279838435579	0.36601105246805	0.422800554289384	0.791548847368906
Merged-chr13-13524298-4	chr13	13523771	13524771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66138.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.46551209699473	3.80642545685664	3.42467755367295	3.64495885111631	3.50067969215021	3.4974052422715	-0.12467124428146	0.832904350775768	0.96086493572934
Merged-chr5-63827934-2	chr5	63827441	63828441	+	993.5833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	15446.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	7.533685457425	7.48027874868903	7.4851552051175	7.98168399240668	8.00375149703159	8.03479095676886	0.727789322138718	0.000611409454217856	0.0123152161381165
Merged-chr10-123061016-4	chr10	123060513	123061513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	RMER19B|LTR|ERVK	15492.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	5.91670701235219	6.0725088545073	5.63392396221835	5.42291571081522	5.72614965904237	5.97281830427214	-0.3160424248305	0.358169959756148	0.744596677605421
Merged-chr17-15774888-3	chr17	15774362	15775362	+	794.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	51724.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.12828893713643	4.00658842938784	4.01523941315529	4.26374108858884	4.31874592197834	4.08530760835653	0.508845756156454	0.285600690697075	0.683136294349102
Merged-chr5-145117049-4	chr5	145116557	145117557	+	947.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2801.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	6.46826609973944	6.41139158122089	6.42264805343415	6.45826412459544	6.38286969907248	6.74575036763599	0.150276568573799	0.584329112079703	0.874561879083458
Merged-chr2-118562591-4	chr2	118562083	118563083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12897.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.51214288200101	6.44415330915938	6.54204803124673	6.85744191287176	7.20185238273016	6.82936187716662	0.761891049575801	0.00428060214117953	0.0547464406645046
Merged-chr17-25833010-4	chr17	25832500	25833500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019719, exon 1 of 7)	5' UTR (NM_019719, exon 1 of 7)	361.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	8.40339407676288	8.5450759257493	7.92514892907921	8.31534471372271	8.49770343579388	8.16281848805076	0.0156700789437796	0.951109619443661	0.988640991339789
Merged-chr10-75645027-2	chr10	75644527	75645527	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	2.57062791252309	2.53307741764144	3.05366068646191	2.58940811198254	2.45615737186384	2.84936870473356	-0.516188471751278	0.530664025854825	0.851304720575858
Merged-chr17-24740741-2	chr17	24740241	24741241	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013759, intron 3 of 4)	B2_Mm1a|SINE|B2	4148.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	2.4807685761758	2.66043479237119	2.85644365191774	2.7582471453784	2.60862162162158	2.87061856555534	0.405533082067153	0.599843533146649	0.881262559681411
Merged-chr4-75401656-2	chr4	75401156	75402156	+	820.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123364.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.83001558005902	5.73909060861195	4.72679667529589	5.45624248419691	5.41165868352044	4.88570924788611	0.160395369409087	0.744858010751149	0.936032341688524
Merged-chr13-74350216-4	chr13	74349718	74350718	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023281)	promoter-TSS (NM_023281)	22.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	7.15963446381026	7.42329900519703	7.26612908375763	7.33486426083447	7.28584325563229	6.76981443361865	-0.184219014760224	0.499892458950578	0.834822914688603
Merged-chr1-163403318-2	chr1	163402818	163403818	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178883, intron 1 of 4)	intron (NM_178883, intron 1 of 4)	351.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	3.8654490318799	3.74745867051884	3.9459271053001	3.94225896295269	3.8066254381861	3.70921782060949	-0.0795655620367566	0.879220898468753	0.972083703102674
Merged-chr7-5063321-2	chr7	5062821	5063821	+	961.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	1178.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	6.54089135715486	6.82725246467202	6.76307646716145	6.86929444366347	7.0239881319046	6.71088550939454	0.261082640036976	0.324881663490582	0.717772647648144
Merged-chr5-31241401-4	chr5	31240885	31241885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147201, intron 1 of 17)	GC_rich|Low_complexity|Low_complexity	467.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	7.43602872143845	7.64404616584156	7.53234183088384	7.36225450133085	7.27533922940581	7.59866019908282	-0.189783660984527	0.425257098940164	0.792989841078687
Merged-chr15-82806852-2	chr15	82806352	82807352	+	985.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-12607.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	3.74298059832844	3.90293472904811	3.75120006023146	4.03684491388715	3.90009867682494	3.7129142952148	0.284705789682954	0.59037732192277	0.877218317361274
Merged-chr17-35167722-2	chr17	35167222	35168222	+	753.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2845.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	3.69078077461299	3.56996235280376	4.17146262780024	3.81311982526962	3.95724929374951	4.19626651980906	0.509309430285626	0.368579542979642	0.753532349195332
Merged-chr10-41595773-4	chr10	41595245	41596245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358562, intron 30 of 47)	intron (NM_001358562, intron 30 of 47)	27729.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.95915102451334	5.63539126037584	5.80404529795351	6.28092511786933	6.62435569281521	6.2384581268668	1.01565198838393	0.00103553812773419	0.0185062406641981
Merged-chr16-44026459-4	chr16	44025959	44026959	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	L1M4|LINE|L1	1486.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	6.27932423605775	6.60584950760791	5.99593647944892	6.53427212925372	6.80508019794758	6.48809494379832	0.470124499343762	0.128974537231616	0.480255574973539
Merged-chr9-22054932-4	chr9	22054451	22055451	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2928.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	3.92348434170467	3.55608482919677	3.39416842619956	3.42874416038069	3.28658675267464	3.52481456737264	-0.866985171789337	0.159153811966003	0.531158781765317
Merged-chr8-104384188-4	chr8	104383691	104384691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	11616.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	6.73312323046529	7.18768102236491	7.02037268955143	6.9822322903429	7.0418664895747	6.97047018956068	0.00768909701136245	0.976577636328317	0.994723308989508
Merged-chr12-55368620-4	chr12	55368130	55369130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-15592.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	3.25545580166427	3.17383713021565	3.25355440827494	3.27982417459201	3.35567197832913	3.26772640405649	0.318391720466677	0.603360574131081	0.882544198306255
Merged-chr2-118353656-2	chr2	118353156	118354156	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	19763.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	2.5597239403452	2.5997754710919	2.57461303716884	3.06832921457182	2.8008085742381	2.90803568186076	1.92447159310867	0.0129907816973593	0.120883131679028
Merged-chr7-4660090-2	chr7	4659590	4660590	+	562.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360629)	TTS (NM_001360629)	-1140.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	4.46723042289837	4.74396197123159	4.69660864021398	4.60069656664531	4.57881752330942	4.72385183111689	-0.0221622067691121	0.957577539682034	0.98996830630481
Merged-chr11-118473128-2	chr11	118472628	118473628	+	660.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-3704.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.2109331445898	4.49887723096277	4.8130250316858	4.25794079066584	4.35111607675999	4.73922237595903	-0.159523846137286	0.741814819680504	0.934976596408911
Merged-chr11-32556621-4	chr11	32556193	32557193	+	974.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	23427.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.55313128533266	6.35478030494587	6.69260867337195	6.37684076289536	6.2305636811044	6.32097935739982	-0.367639379800639	0.185070925673674	0.569139411019522
Merged-chr5-43672331-3	chr5	43671840	43672840	+	992.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	9961.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	3.56456319540759	3.38412829281465	3.16411088984965	2.92276238382899	2.82612970421013	3.05340720872759	-2.13883515280932	0.00278774503840138	0.0397673048440428
Merged-chr2-68864536-2	chr2	68864036	68865036	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	3095.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.54513994241578	3.58238814624892	3.6685628416408	3.70523723560993	3.41030177312134	3.63464520413549	-0.0447747879016993	0.937051696919952	0.986037792257163
Merged-chr19-57610068-4	chr19	57609597	57610597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-937.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	6.81759067569201	7.10953505458577	7.28751622110387	6.93677265678799	7.10529020128515	7.23402633220933	0.0231129679690803	0.930606305205697	0.984625325121825
Merged-chr2-72286560-3	chr2	72286057	72287057	+	980.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	856.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	7.22067947399471	7.23713495366204	7.03692982425715	7.30048304531143	7.31303696467124	6.74519534003088	-0.0217753231196156	0.936741041199932	0.986037792257163
Merged-chr7-42692789-4	chr7	42692292	42693292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-74.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	5.28896774243298	5.15162790172709	5.36260707129637	5.14658388313017	5.43402667982783	5.20553968832199	0.0252680168778676	0.943522407419552	0.987442772039771
Merged-chr3-115997119-4	chr3	115996640	115997640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023214, intron 2 of 10)	U6|snRNA|snRNA	10266.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	4.98308164746481	5.0342217341877	5.02758210492303	4.90759001496518	4.97554280367308	4.75388683661205	-0.268395486118732	0.47819626935594	0.823624523176113
Merged-chr5-21567380-4	chr5	21566872	21567872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	23845.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	5.45704641313545	5.00614676054311	5.62209486863589	5.75889951644344	5.83237977684661	5.92691422363462	0.863875580836533	0.0151317543259897	0.133469513285133
Merged-chr3-8916497-4	chr3	8916010	8917010	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	7347.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	2.09010115375475	2.06116907248856	2.29896451585237	2.02958009083185	2.11684605570412	2.18122347011113	-0.296676160828733	0.742073201623692	1
Merged-chr15-8716682-6	chr15	8716158	8717158	+	856.511108	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5851.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	5.08708952843989	5.39292489396743	5.20259692409838	5.748493993249	5.87622958433481	5.76737744640896	1.06756015018218	0.00147882880983387	0.0244632977353194
Merged-chr17-34304450-4	chr17	34303952	34304952	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1415.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	6.36616361091663	5.52596150178332	5.83546521267545	7.14049371615955	7.01802924398716	6.61366393090802	1.5799492199616	9.5051601665222e-06	0.000383038304213902
Merged-chr16-18413202-4	chr16	18412713	18413713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	281.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	6.58745560168558	6.47737369994975	6.88180619660803	6.49684060697568	6.42003106946151	6.45565809014911	-0.309850302057962	0.259900408787239	0.657478815954292
Merged-chr10-80087664-4	chr10	80087151	80088151	+	905.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	ID_B1|SINE|B4	-12212.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.31416633316744	3.92026671333479	3.84029000902388	3.70126476722604	3.90717187330293	4.1075086499976	-0.408221560110554	0.452936018131381	0.809500186796314
Merged-chr2-68787184-2	chr2	68786684	68787684	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74257.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	2.90216479116128	2.7931884226085	3.04394662879673	2.99584238812705	3.06189511207581	3.22739444277023	0.854814525695053	0.212043526544318	0.604420229358776
Merged-chr17-12318090-2	chr17	12317590	12318590	+	842.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	570.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	5.65233176130784	5.64138704156613	5.51647333140521	5.74231913997006	5.62418624317668	5.84380472978519	0.224880254637575	0.477419658519261	0.823237639056184
Merged-chr16-85152646-4	chr16	85152145	85153145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 1 of 15)	URR1B|DNA|hAT-Charlie	21062.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.09876231954959	6.2716886709663	6.36313262601099	5.42522766322248	5.48347360674024	5.47909582012927	-1.39591763700223	6.58986709618097e-06	0.000279902838866272
Merged-chr13-21180129-7	chr13	21179621	21180621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009054, exon 1 of 8)	5' UTR (NM_009054, exon 1 of 8)	190.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	6.79052278261486	7.00377358335438	7.20679570728038	6.79955444279342	6.88947086582508	7.18472351864273	-0.0662761234910505	0.806907480112527	0.954399610026228
Merged-chr11-79087178-2	chr11	79086678	79087678	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-27342.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	5.21927960788074	5.26686796008732	4.97436655329668	5.18894730949266	4.92751122203693	5.00287391353526	-0.266691164002816	0.475667366602741	0.822085995228598
Merged-chr1-134416395-3	chr1	134415916	134416916	+	853.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	752.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	7.5106333687604	7.90708767013268	7.74558635293542	7.55513937575181	7.87942759946105	7.70613447204048	-0.0119483286951902	0.961119701190823	0.990437155200768
Merged-chr6-76266898-3	chr6	76266408	76267408	+	906.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-975569.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	5.11965947413975	5.38616796740905	4.893834204191	4.77661270742585	4.48663173185617	4.72179141553281	-1.10800061857533	0.00690573300638882	0.0773263668410175
Merged-chr5-139399535-2	chr5	139399035	139400035	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-6852.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	3.03584246651938	3.05303017681025	3.35558920935029	2.99556884988541	3.238538613236	3.4253499592253	0.325012989907858	0.628563079133598	0.893783616313365
Merged-chr3-116167026-2	chr3	116166526	116167526	+	666.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-37338.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.63585487455904	4.87213212338799	4.64687540823666	4.67043427254692	4.28785942529609	4.59110651552789	-0.502421336853635	0.247403290932569	0.644290344040439
Merged-chr1-7090903-2	chr1	7090403	7091403	+	925.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	1983.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.675744405114	3.85651747351061	3.3786892862925	3.9963861901906	3.90116349256732	3.63797435352413	0.637894978963744	0.285013163445921	0.68257469790491
Merged-chr5-147418944-4	chr5	147418438	147419438	+	856.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033625, intron 1 of 2)	intron (NR_033625, intron 1 of 2)	318.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	4.9225443875765	4.87290758730128	4.80454717148135	4.73784463121063	4.20273102798894	4.59294454686699	-0.821022888226198	0.0611948155554966	0.320796915307427
Merged-chr10-82764067-4	chr10	82763528	82764528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010914, exon 1 of 8)	5' UTR (NM_010914, exon 1 of 8)	113.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	6.06332686136803	5.60421752649775	5.96211669885035	6.28024628200154	5.40145295688342	6.06736417514158	0.132242776552348	0.730576120153307	0.930911472656386
Merged-chr10-40314753-3	chr10	40314258	40315258	+	924.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12570.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	2.81163889038569	2.76429657642834	2.89888140978807	2.84388856570459	2.65594066509752	2.59370322762239	-0.630844232162193	0.398202479347486	0.774929344051196
Merged-chr14-33158475-4	chr14	33158001	33159001	+	860.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	26565.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.94164692062407	3.69805673643807	3.74957499023063	4.20234977274667	3.87593076374008	4.02569083536994	0.721103827404716	0.169572856766853	0.546439877378084
Merged-chr19-10948399-4	chr19	10947925	10948925	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023731, exon 1 of 4)	exon (NM_023731, exon 1 of 4)	841.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	7.94606398164614	8.19149929558308	7.80513585133663	8.10651810009541	8.34831077009797	7.81785368140506	0.171230896988606	0.498817218189626	0.834135868113764
Merged-chr18-11822518-4	chr18	11822016	11823016	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045421, intron 3 of 3)	intron (NR_045421, intron 3 of 3)	-16758.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	4.73675433062504	4.60725544245588	4.72126904900773	4.85065652990796	4.85282870456688	5.03674063407458	0.509797676464669	0.194622421517716	0.582041564520222
Merged-chr3-69679461-4	chr3	69679010	69680010	+	908.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-42545.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	5.81046187939535	5.52026073509793	5.84840338005263	5.89523495424333	5.74828562732659	6.00121812137876	0.269745525888269	0.397887324832996	0.774623503151706
Merged-chr6-108874615-2	chr6	108874072	108875072	+	952.0	f0_balb.idr|f1_balb.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	45931.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	2.52769397425207	2.45217039677895	2.51028543692896	2.29254309062158	2.19998963534153	2.25682700324041	-1.7348224674705	0.0471391456449721	1
Merged-chr4-139199858-4	chr4	139199341	139200341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5730.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	8.17044060681329	8.17183468069378	7.9761344839704	8.10514710698655	8.44719465297334	7.99363247981939	0.129565312143252	0.583747934230769	0.874225271981634
Merged-chr14-63124923-3	chr14	63124431	63125431	+	902.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	2469.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.07084477338337	8.40163485165458	7.93089059441378	8.32643150813813	8.42115574786362	7.88784540123771	0.117338720785635	0.65257186443592	0.902986290245403
Merged-chr19-55862016-2	chr19	55861516	55862516	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-33305.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.23893313804847	3.29534903834702	3.40921912718157	3.40042076386526	3.33691735369205	3.25477871228821	0.0886098583534225	0.883780443836868	0.973446302281334
Merged-chr15-89211291-4	chr15	89210802	89211802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-257.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	7.11462862718486	7.58873239745754	7.25005120566611	7.52234963319379	7.60596603563793	7.46293841439699	0.286795208246364	0.257195779449445	0.65447682070026
Merged-chr2-169087442-3	chr2	169086929	169087929	+	871.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109160.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	3.79712542000594	3.83420528498234	4.28584010504911	3.48482673445665	3.23399549032301	3.73908361610744	-1.68189346005185	0.00657034934205039	0.0746152078686132
Merged-chr17-26240630-2	chr17	26240130	26241130	+	659.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	3612.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	4.14554944503697	4.40451132033283	4.37051275087214	4.51385427188248	4.30939871858524	4.16003687506653	0.0785254269018113	0.866128062984842	0.968757596344316
Merged-chr6-97278127-4	chr6	97277620	97278620	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25340.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.74559917234893	4.38916914645727	4.55821143486668	4.69973025451144	4.54136372154897	4.31041686192851	-0.098360676686921	0.825731572384552	0.958905162102576
Merged-chr9-35050201-4	chr9	35049712	35050712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-66516.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	7.41651345268104	7.44698628808662	7.35621978717852	7.27303014490207	7.62811668454429	7.11036876992705	-0.0595196231138938	0.816411077487156	0.956664796338092
Merged-chr6-92544025-2	chr6	92543525	92544525	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	-9164.0	NM_001134459	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	2.41269286990529	2.27551572620308	2.26146050284584	2.53540214502578	2.30039469476053	2.5350208016643	0.877354970660443	0.300247650342779	1
Merged-chr5-125059621-3	chr5	125059135	125060135	+	831.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 17 of 46)	intron (NM_011424, intron 17 of 46)	56160.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	3.32672980966593	3.07992014269287	3.21077712152224	3.1437239162325	2.84885319816791	3.22599956061394	-0.580241067540547	0.395162973497488	0.772579826044138
Merged-chr2-144214698-4	chr2	144214212	144215212	+	823.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25422.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	6.92855749899453	6.49283529090197	6.27277956385522	6.86335315069526	6.92234323310756	6.43796784568344	0.255013813042726	0.420911031346413	0.789984325715531
Merged-chr16-33915233-4	chr16	33914750	33915750	+	985.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	51788.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.85608253252282	5.85647454942352	6.04198159799272	5.68246682095574	5.68510921095902	5.90157200633958	-0.290458820547893	0.344890476362571	0.733373712840888
Merged-chr2-24571085-4	chr2	24570572	24571572	+	815.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95473.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	2.68997109618894	2.61278369064085	2.96961560507904	2.66375782437878	2.37430396513148	2.56177495024293	-1.28516552471172	0.116282733589101	0.455244812559434
Merged-chr16-16536637-1	chr16	16536137	16537137	+	760.0	f0_balb.idr	intron (NM_001301817, intron 1 of 16)	Lx7|LINE|L1	-9226.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	2.87021248744192	3.14561215463299	3.00627477716034	3.00250561742268	2.83417103888091	2.89599297082373	-0.486251062047552	0.48544348929804	0.827466595462693
Merged-chr6-89258337-4	chr6	89257833	89258833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27392.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	7.46712314623096	7.53050368041984	7.50670276200103	7.37633241868576	7.51029493976016	7.34208049733807	-0.124866471393744	0.579122738314744	0.872437416842052
Merged-chr1-156470511-3	chr1	156470055	156471055	+	854.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3773.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.61777085998336	7.84431996130219	7.35115919584146	7.54881897909396	7.746966576782	7.38555852077061	-0.0758492645803876	0.768173514075356	0.942831449939876
Merged-chr2-6251321-4	chr2	6250822	6251822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 2 of 6)	intron (NR_040333, intron 2 of 6)	-38328.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	4.54266830672075	4.43205252958079	4.20227751055582	4.36253289140559	4.20470049738568	4.27166644424866	-0.341140531700785	0.455623645879948	0.811069747178527
Merged-chr19-46600063-1	chr19	46599563	46600563	+	658.0	f1_balb.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	957.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.39254637143364	5.6798056885188	5.58285087418691	5.58094602249374	5.63537112936854	5.58969558576249	0.0872130411701742	0.788944568506677	0.949092571737679
Merged-chr7-4865867-2	chr7	4865364	4866364	+	944.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026158, intron 1 of 5)	intron (NM_026158, intron 1 of 5)	315.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	5.82899021732075	5.83367212003223	5.81633670997967	7.36128602504632	7.45639263345837	7.24163885468712	2.44795549067731	2.36896746090758e-20	1.64264203739331e-17
Merged-chr11-101010226-2	chr11	101009726	101010726	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 1 of 20)	intron (NM_001243049, intron 1 of 20)	774.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	6.49818198131335	6.30460164300807	6.24836483357619	6.78619424720812	6.81828098465824	6.00204007987863	0.389807173629694	0.241828339253996	0.638862793574907
Merged-chr5-108031468-4	chr5	108030966	108031966	+	976.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34208.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	3.78940302527896	3.79969944184754	4.16510265053039	4.05643897309035	4.07433138228027	3.8518054530485	0.254672252961792	0.625443298283383	0.892513881101067
Merged-chr9-110685776-4	chr9	110685280	110686280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	29277.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.83874393414397	4.69177622769286	4.60463965891535	4.70585825821524	4.55816497998614	4.67152313868783	-0.185226815243985	0.650215804843248	0.902576889668442
Merged-chr17-71489892-4	chr17	71489415	71490415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-14572.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	5.95073333195897	5.66463161092531	5.78237561498556	6.20055625147106	6.32618264986259	6.33178739691875	0.82778690250828	0.00515418751609357	0.0624628072879571
Merged-chr5-125314137-3	chr5	125313640	125314640	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	26954.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.33133168592457	5.39136382385495	5.22376135418727	5.30015693271867	5.40205090959132	5.472564772877	0.133156048868198	0.694929294079099	0.919230570201314
Merged-chr2-128755678-2	chr2	128755178	128756178	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	56763.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	3.93438455641373	3.71621556376025	3.94900422577778	3.6592916255107	4.05766653565524	4.1092504040018	0.273127145233266	0.611740919881613	0.88631119885618
Merged-chr15-89478858-2	chr15	89478358	89479358	+	776.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_077233, intron 4 of 4)	intron (NR_077233, intron 4 of 4)	-1434.0	NM_009713	11883.0	Mm.620	NM_009713	ENSMUSG00000022620	Arsa	AS-A|ASA|AW212749|As-2|As2|TISP73	arylsulfatase A	protein-coding	2.70345479778477	2.59867049892373	2.99560282539983	2.65222853729873	2.74751176271516	2.78150763814612	-0.22492516652655	0.766073650555085	0.942366894267556
Merged-chr10-81106187-8	chr10	81105727	81106727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347144, exon 1 of 11)	exon (NM_001347144, exon 1 of 11)	312.0	NM_001358539	26396.0	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	8.1310534046781	8.0611606842953	7.91225378510115	7.99479345868597	7.87023241674158	7.96061364174347	-0.143729855838398	0.502602456804637	0.836562439638842
Merged-chr13-108158668-4	chr13	108158166	108159166	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362403)	promoter-TSS (NM_001362403)	-41.0	NM_001127346	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	5.80888703439243	5.97058840838307	5.41160082072911	5.68808169232405	5.29740385797986	5.34474269181391	-0.571736290714688	0.113301098980035	0.449643790023599
Merged-chr2-52925288-4	chr2	52924789	52925789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	67421.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.48542625099099	6.30218063754871	6.15689287259856	6.13545834363048	6.14332980040496	5.58837005495779	-0.558203660903479	0.0866426282075637	0.389905884688748
Merged-chr6-108659516-4	chr6	108659010	108660010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104577, intron 1 of 6)	CpG	-1119.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	9.0678274114126	9.04626168830766	8.4770999689794	8.78425097139721	9.09453076060123	8.47367120921026	-0.111839664177154	0.681643664371904	0.914780265556875
Merged-chr1-177483769-4	chr1	177483263	177484263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	37942.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	3.34374775298505	3.09634256781322	2.98156358283271	3.21810820530045	3.53166539756605	3.24508460456531	0.770337352290648	0.25579286268264	0.65278369937424
Merged-chr10-44495607-3	chr10	44495111	44496111	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36863.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	2.71079984840816	2.66845064551856	2.54595385308742	2.84542698361665	2.6969891660392	2.81401497829889	0.735061292822483	0.327760960971811	1
Merged-chr2-26903552-1	chr2	26903052	26904052	+	585.0	f0_balb.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-665.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	5.99840522134807	6.42981143890972	6.31094520312809	6.32510100433996	6.61481321892795	6.42775045600376	0.340831313612615	0.249944340483164	0.647127035998604
Merged-chr5-137836224-4	chr5	137835713	137836713	+	898.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153510)	promoter-TSS (NM_153510)	65.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	4.19098948919595	4.32440774517504	4.46344303340026	4.39902462851842	4.50072265179761	4.48865071865592	0.363619245616065	0.410224385196227	0.783122275986134
Merged-chr7-118740163-4	chr7	118739654	118740654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027815)	promoter-TSS (NM_027815)	-117.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	6.34907256810333	6.1610717420029	6.35766248141573	6.42057221919627	6.25371066650068	6.41724961890198	0.11989358463704	0.664989856121336	0.907721942545399
Merged-chr6-72374542-2	chr6	72374042	72375042	+	598.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5926.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	4.08979470015397	4.1367593634704	3.87784264495378	3.91643158465661	3.96549882815241	3.67119388098861	-0.54274948886496	0.302268362906696	0.698958713820873
Merged-chr1-154117606-3	chr1	154117096	154118096	+	963.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83591.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.95846692381784	7.10221975334991	6.89016565616644	6.76238130572049	6.94828599008824	6.9197889293168	-0.171120854844026	0.492014865964186	0.83087234321328
Merged-chr3-131702094-4	chr3	131701582	131702582	+	918.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136050.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	3.29314932202359	3.32683775130236	3.50033207110954	3.55880216011473	3.60963262089293	3.34745085918241	0.555161470348447	0.35178145551821	0.739445861272404
Merged-chr10-60349868-2	chr10	60349368	60350368	+	650.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3017.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	7.4246221069968	7.37162348301037	7.10220149268422	7.49035388171286	7.79859453197075	7.19939884384843	0.319297896777185	0.23797531800014	0.634568444188813
Merged-chr6-115853498-4	chr6	115853012	115854012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031177)	promoter-TSS (NM_031177)	-16.0	NM_001167763	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	6.57428968755408	6.61235771379412	6.8050422684804	6.42205758620807	6.73757984341078	6.64920842778601	-0.0764007041542911	0.777015920297111	0.944960604705842
Merged-chr2-104146133-2	chr2	104145633	104146633	+	586.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033347, exon 21 of 21)	3' UTR (NM_001033347, exon 21 of 21)	23364.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	2.18983129109494	2.15575024774513	2.32424207850541	2.05982486232887	2.17148349219642	2.06981291496218	-0.861337783026953	0.342238496169829	1
Merged-chr12-83692951-2	chr12	83692451	83693451	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	4388.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	3.11069414525717	2.70345468585783	3.12317502641491	3.25398173466951	2.90957308589823	3.07905645284421	0.425146643340367	0.561435718914671	0.865407801976397
Merged-chr2-103761294-4	chr2	103760786	103761786	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153126)	promoter-TSS (NM_153126)	-16.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	7.62860361911847	7.89470812897749	7.41453298600012	7.47013656270949	7.72523030375852	7.50350675731587	-0.134824361261652	0.591586998601419	0.877710165381539
Merged-chr7-27178564-2	chr7	27178064	27179064	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_029391, intron 1 of 7)	intron (NM_029391, intron 1 of 7)	319.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	6.95458419238771	6.84103612874991	6.99184216956366	7.11857053850387	7.05524154712369	7.15177191877614	0.272939264325293	0.253911493577493	0.651117231535132
Merged-chr2-124679732-2	chr2	124679232	124680232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26151.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.66751381401568	3.92583244781853	4.12732832508012	3.42543681682887	3.44512035200646	4.06743951634239	-0.774986769620812	0.21024080634159	0.602276286375783
Merged-chr15-34083399-2	chr15	34082899	34083899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_026002, exon 1 of 12)	exon (NM_026002, exon 1 of 12)	680.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	7.89907034397473	8.20757698490153	7.99927946887356	7.84624559043265	8.01427013775111	7.91866932509405	-0.161818471224504	0.469526276753427	0.818977178978635
Merged-chr11-101316646-1	chr11	101316146	101317146	+	829.0	f0_c57.idr	intron (NM_011192, intron 1 of 10)	intron (NM_011192, intron 1 of 10)	433.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	7.54508249140568	7.5934938487524	7.31005358284328	7.37460021509454	7.49400602845931	7.26124733363216	-0.160288806653414	0.500259240589233	0.834978949366358
Merged-chr5-145201504-2	chr5	145201005	145202005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_023322, exon 1 of 3)	exon (NM_023322, exon 1 of 3)	377.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	8.42266184111554	8.80212127105266	8.4370950202732	8.36926967315235	8.63878943496826	8.31406327941673	-0.161761450041188	0.491943624786965	0.830836346741775
Merged-chr3-103915838-2	chr3	103915338	103916338	+	646.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	1718.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	5.39655939344938	6.27955294788806	6.33925895296783	6.32890553283984	6.74250440116458	6.34250091386347	0.690516090704686	0.0691290528524142	0.343993860226086
Merged-chr5-93194033-2	chr5	93193533	93194533	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12462.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.5835401960206	5.73333214340984	5.63368501617031	5.8377656749686	5.55514910980895	5.72260875591492	0.0954794131120719	0.76544458622347	0.942148336413151
Merged-chr2-71388457-2	chr2	71387957	71388957	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-803.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	4.87097727631882	4.92347015403243	4.36703262534397	4.86135671622485	4.91182113870753	4.48735439632839	0.0467547179266046	0.91816662549605	0.981747877135909
Merged-chr17-34203589-2	chr17	34203089	34204089	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	-890.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	3.05929791229803	3.01245456667018	3.23369498962239	3.20688271363419	3.13655548382377	3.35885603460372	0.569297923222867	0.376720611548466	0.759336465825071
Merged-chr13-73604782-4	chr13	73604274	73605274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146047, intron 1 of 16)	intron (NM_146047, intron 1 of 16)	772.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	6.92305340182011	7.00480734549915	6.72749322919436	6.98562493260674	7.00634601823199	6.50207933010547	-0.0500785024656767	0.85787903731138	0.966785186918462
Merged-chr16-57563422-3	chr16	57562947	57563947	+	954.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	14205.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.5267808185564	6.07500584994887	6.23025798530281	6.02343591897725	6.13193996784137	6.27030680860487	-0.256352366808589	0.396623259205868	0.773701467493871
Merged-chr4-135899280-4	chr4	135898770	135899770	+	815.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009924, intron 1 of 1)	intron (NM_009924, intron 1 of 1)	4081.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	4.53858728211872	4.78481435811863	4.11423046383839	4.45969079563536	4.21526258974949	4.02300269530827	-0.6892471915438	0.17793439109039	0.55892688546374
Merged-chr1-192742097-1	chr1	192741597	192742597	+	544.0	f0_c57.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	29122.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.6525012914234	2.61885283529474	2.63279204625087	3.05123274979461	2.94504630377646	3.02194442503361	1.98637470027017	0.00827149971233284	0.0881474062581699
Merged-chr11-69122767-4	chr11	69122248	69123248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033041, exon 4 of 4)	exon (NM_033041, exon 4 of 4)	2295.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	5.82631243740052	5.37903671668841	5.45918163436617	5.88280083144411	5.89135110068506	6.01581674497509	0.635016030450856	0.0559296483283207	0.304457880879889
Merged-chr16-92430912-4	chr16	92430407	92431407	+	984.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30829.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.55447930373129	5.71952025408811	5.51984007812072	5.14405145813464	5.15639742355834	5.31361220936297	-0.793910708924159	0.0190290433877061	0.15628947213545
Merged-chr3-55627302-4	chr3	55626790	55627790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 57 of 57)	intron (NM_030595, intron 57 of 57)	-155220.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	4.08194996859917	4.08798516174936	4.22269949467463	4.24088416412775	3.80365774350867	4.15568928686685	-0.159243383904812	0.75175344482556	0.937978356481604
Merged-chr10-119052643-3	chr10	119052159	119053159	+	940.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR81A|LTR|Gypsy	-2160.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.50545328067561	5.23120064740877	5.0903754589948	4.86766553160521	4.83734017145509	5.15509893664589	-0.721880467806141	0.0595812904272055	0.315934234888282
Merged-chr11-51900001-4	chr11	51899490	51900490	+	891.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-42360.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	3.46104123760122	3.50284177893868	3.70433003140659	3.50231110397293	3.48957525231347	3.40215466574813	-0.313251442839134	0.587863631524393	0.876125397214482
Merged-chr4-58898507-2	chr4	58898007	58899007	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172381, intron 1 of 48)	intron (NM_172381, intron 1 of 48)	13423.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	3.39168349910801	3.25457994512711	3.28323457012013	3.18378109679047	3.45812713239707	3.23830533062116	-0.0231916893157756	0.970440122841914	0.993459421031373
Merged-chr10-30778940-4	chr10	30778443	30779443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	Lx7|LINE|L1	24383.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.32641693950637	5.93027239062016	5.69177583951249	5.80050420318544	5.92335211183494	5.78232324412036	-0.316611579486103	0.342805068294979	0.731706747112552
Merged-chr12-72310299-4	chr12	72309809	72310809	+	720.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	-73582.0	NM_001007596	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	2.40830532012068	2.52389366669736	2.52654801814642	2.80923002168265	2.56503873456057	2.85024974957529	1.47885628244599	0.0634340090750972	1
Merged-chr5-35105737-4	chr5	35105237	35106237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-40.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	6.63554186437315	6.74594232738031	6.62209130502538	6.68254365146267	6.60883532998211	6.48795321335255	-0.114422119633086	0.657477938236514	0.904798742244684
Merged-chr10-20655190-3	chr10	20654704	20655704	+	901.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 1 of 12)	Lx8|LINE|L1	69874.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.92532471481162	3.63204600152848	3.72308930831315	3.72252736912611	3.45981494474341	3.52021520267532	-0.673633264417805	0.235255752938903	0.6315179111056
Merged-chr4-134120411-4	chr4	134119981	134120981	+	756.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026257, intron 8 of 14)	ID_B1|SINE|B4	8272.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	3.40152890812716	3.28551671562414	3.33163981583521	3.87727318372769	3.87907849603583	3.84632945060649	1.90854713590677	0.00098763255613401	0.0178300997463221
Merged-chr4-116808312-2	chr4	116807812	116808812	+	887.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026654)	promoter-TSS (NM_026654)	578.0	NM_001159581	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	5.13993791244378	4.93825872329217	5.46326757170967	5.47976701127979	5.42139148750335	5.32027540043393	0.45488273614963	0.215479807153758	0.608899282194137
Merged-chr10-56107348-4	chr10	56106850	56107850	+	768.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163833, intron 1 of 1)	intron (NM_001163833, intron 1 of 1)	433.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	6.74671374082504	7.39799949303759	6.52461829355103	6.77070405629645	7.33815871782159	6.46632660356675	-0.0508026276674932	0.890512440152995	0.974528422443459
Merged-chr12-98375557-7	chr12	98375062	98376062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	106927.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.93509869639495	6.34485965269453	6.04671909057388	6.10631215092062	6.13494173632073	6.21480077515451	0.0390159916979433	0.896624893911437	0.975838835430135
Merged-chr11-23255763-4	chr11	23255258	23256258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134014)	promoter-TSS (NM_134014)	-283.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	7.86941156598318	8.06911045841597	7.72060735335437	7.84058323731536	8.05468568968172	7.72257111528082	-0.0190702914710597	0.93600432474778	0.986014061025137
Merged-chr15-76766879-3	chr15	76766360	76767360	+	893.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-43015.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	4.91096732431614	5.22140202095014	4.94566505202412	4.34924400235663	4.53060257375638	4.53998758432202	-1.3053885353234	0.00173847427400281	0.027738248780676
Merged-chr13-11907035-1	chr13	11906535	11907535	+	552.0	f0_balb.idr	intron (NM_023868, intron 3 of 104)	intron (NM_023868, intron 3 of 104)	199910.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	2.87907679417251	2.96841405029252	2.90738625706351	3.20952414095406	3.06368666703076	3.38272579383232	1.35223497048152	0.0475678880610276	0.276280775230824
Merged-chr12-3823833-4	chr12	3823319	3824319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16659.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.85845432902225	6.81614655057482	6.45797579615408	7.06659313526006	7.24079777330026	6.37383325164058	0.351974573043919	0.281366940828808	0.679520750186356
Merged-chr18-75018725-4	chr18	75018223	75019223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027727)	promoter-TSS (NM_027727)	-49.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	6.55548067436956	6.80692755070454	6.79735555207076	6.51468995466733	6.26711189772619	6.3087380743695	-0.570472662140742	0.0370030587367625	0.237207281307283
Merged-chr10-85502410-4	chr10	85501909	85502909	+	904.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	-96002.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.53675081113673	3.41594392544408	3.48525194837641	4.36649519499273	4.02035831634867	4.04862854843818	2.23953607205799	7.56494594152008e-05	0.00224192530571387
Merged-chr1-74235333-2	chr1	74234833	74235833	+	758.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-1184.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	2.91256236808393	2.95515797634275	3.12924995017847	2.97072484344375	2.89486086551633	2.96985240727241	-0.253009785419135	0.709318401821166	0.923955477167413
Merged-chr7-97078585-3	chr7	97078037	97079037	+	844.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3214.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.31369551990028	3.14975534725413	3.16930011030853	3.07319196960786	3.00795718407701	3.24103995007879	-0.476451400761922	0.462272879631621	0.815159087955196
Merged-chr10-128337656-4	chr10	128337147	128338147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026444)	promoter-TSS (NM_026444)	-80.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	7.45254035311427	7.47503956385294	7.58785488204223	7.27772040275664	7.56300609451851	7.49031461099656	-0.075877446758027	0.744609301627905	0.936032341688524
Merged-chr10-69184984-2	chr10	69184484	69185484	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23568.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.52874833290682	5.57509615595182	5.47353301089483	5.31640667141342	5.20075402202749	5.74656440254132	-0.195410870222879	0.583331422798434	0.87400013033251
Merged-chr2-49451582-4	chr2	49451133	49452133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172663, exon 1 of 14)	5' UTR (NM_172663, exon 1 of 14)	147.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	8.15778871374669	8.08228231565656	7.74202019177569	8.14038310301877	7.77346170368615	7.78953064646143	-0.14045137136108	0.571476487137617	0.869547320544841
Merged-chr13-9763225-4	chr13	9762714	9763714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	596.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.03297071214891	6.09412236988602	5.81586975965303	6.6393918359915	6.5267441456335	5.93272034517065	0.700922983218125	0.0329318097542253	0.221123872473418
Merged-chr6-135350365-3	chr6	135349855	135350855	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12576.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	4.64421939739529	4.33979916102498	4.10244244964258	3.61574709887077	3.5184396803296	3.69105530697556	-2.51086708922825	7.68021687518759e-06	0.000318730915586339
Merged-chr2-3526505-4	chr2	3526001	3527001	+	879.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177647)	TTS (NM_177647)	13436.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	4.68521186589448	5.18030945141309	5.0781787756511	4.70179764266017	5.01880303598473	4.20880013030534	-0.667758552317074	0.180508879755158	0.562412299358467
Merged-chr8-80874359-4	chr8	80873859	80874859	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	6120.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	5.59573683146943	5.29479377496591	5.31609799289742	5.0954125200314	4.49851140793469	4.93820264231119	-1.15604290065426	0.00465301762271857	0.0582646035140958
Merged-chr15-101131522-1	chr15	101131022	101132022	+	920.0	f1_balb.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	3000.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	3.00451953138927	3.33358677311912	3.31362870890185	3.59148222357153	3.30601179286495	3.49592450957023	0.950576649200669	0.138921359022151	0.497943722067999
Merged-chr11-103251418-2	chr11	103250918	103251918	+	830.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	GA-rich|Low_complexity|Low_complexity	15983.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.18845543495655	4.22919684161924	4.39650165890507	4.17491303164435	4.2600157141849	4.15298292289153	-0.182715906320376	0.692380059664957	0.918654186605676
Merged-chr2-5653741-2	chr2	5653241	5654241	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	22305.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	3.1359745991794	3.15649222923565	3.20502155038778	3.00099048867348	2.91358558172561	2.98417769609521	-0.92106152269222	0.164753398290795	0.539419247854745
Merged-chr7-16405241-2	chr7	16404741	16405741	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4045.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	5.61171149406375	5.98854163842156	6.36383339107939	6.20196804423257	6.27383253947888	6.57299003434459	0.572956293080404	0.0917020237170706	0.403261817071069
Merged-chr13-9634976-3	chr13	9634480	9635480	+	697.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 30 of 36)	intron (NM_001081426, intron 30 of 36)	128830.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	3.90408084290791	4.05258617444522	4.20325872914169	3.7317117982749	4.07598508089447	4.09321469397751	-0.221734909254378	0.66816286540858	0.908976375106763
Merged-chr2-53005425-1	chr2	53004925	53005925	+	574.0	f0_balb.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	147557.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.33552326884584	3.24908938999533	3.33168350860687	3.20904473994237	3.10705661805045	3.11353269883231	-0.678771313159576	0.280040257898816	0.677746132434911
Merged-chr4-88868287-6	chr4	88867715	88868715	+	958.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	11986.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	5.0267161444151	5.22124778896289	5.0656930763646	5.51287423257265	5.20789426752357	5.13111722384334	0.380489506433958	0.300959878517109	0.697653874358754
Merged-chr8-66438059-4	chr8	66437556	66438556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	48474.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	6.30036214294047	5.72264233842877	6.20773435761087	6.1448244709182	6.2091304328753	6.36365355623316	0.237576075417192	0.457504956685897	0.812307535537887
Merged-chr10-60294466-2	chr10	60293966	60294966	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 4 of 14)	intron (NM_011179, intron 4 of 14)	10005.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	3.18321876511733	3.34039743760117	4.01265521118759	3.45288629825219	3.54208091868808	3.81786090080921	0.167342039905212	0.803827843501691	0.953557286986578
Merged-chr2-125247513-6	chr2	125247006	125248006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023595)	promoter-TSS (NM_023595)	-9.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	4.09797378247952	3.67623095719784	3.7817381055961	3.84125823946042	3.6918931445705	4.22468550409276	0.190776898458751	0.735563936072521	0.932744628746236
Merged-chr16-35869322-4	chr16	35868840	35869840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	2042.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	7.90200060844205	8.15917045245159	7.64564165823164	7.77176733763911	8.34174054850733	7.61346322751286	0.0490063687501978	0.866484742652614	0.969039306290674
Merged-chr8-61576061-1	chr8	61575561	61576561	+	595.0	f1_balb.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15108.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.57110785566211	4.57482582501656	5.19344517597128	4.39766265172867	4.80771417800732	4.73368722237966	-0.326288529382269	0.483283140105168	0.826119594918973
Merged-chr1-191278929-2	chr1	191278429	191279429	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	39189.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	3.21648519452493	2.77479783725091	2.79717656666876	3.02277720243439	2.78532030374424	2.99805670145992	-0.0611830654783055	0.934468221704055	0.985708863052331
Merged-chr13-37601502-1	chr13	37601002	37602002	+	569.0	f1_c57bl6.idr	Intergenic	Intergenic	-224536.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.67507137346106	3.36200904383576	3.61807182518772	3.79097492331478	3.69307551491655	3.8414720381135	0.740230526739519	0.188317894234845	0.573809654777037
Merged-chr9-64786105-4	chr9	64785648	64786648	+	896.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24863.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.29425320091072	3.90240256758403	3.97212899543313	3.72450858374521	3.88963593043728	3.83808069856315	-0.762316915467927	0.148362069493237	0.513915084072171
Merged-chr17-42840802-2	chr17	42840309	42841309	+	564.5	f0_balb.idr|f1_balb.idr	intron (NM_009847, intron 3 of 17)	intron (NM_009847, intron 3 of 17)	35615.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	3.38744823117079	3.47011612136861	3.77407216478293	3.35325405972676	3.48512540085494	3.74770098254757	-0.0492352974522473	0.934768189881843	0.985727536128156
Merged-chr10-86990766-4	chr10	86990264	86991264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17178.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	7.57658724893253	7.17787348241191	6.4889283551362	7.42997794613759	7.46533977811935	6.66776001741184	0.117470269488105	0.844770695041605	0.96373428957366
Merged-chr11-59191907-4	chr11	59191430	59192430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	22.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	7.00001470175559	7.09364964587929	7.13130924442817	7.04776847095455	7.41540970581525	7.24879112540186	0.266115544960658	0.283499151298889	0.681376161050487
Merged-chr13-73799015-2	chr13	73798515	73799515	+	760.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011390, exon 14 of 24)	exon (NM_011390, exon 14 of 24)	35318.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	2.40498996267846	2.36477020253695	2.51806669709619	2.2908476346189	2.08506348772152	2.59189254687288	-0.582579557114177	0.523688752066104	1
Merged-chr14-8092717-4	chr14	8092201	8093201	+	731.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001348727)	TTS (NM_001348727)	-5510.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.51664860044457	4.68110115599349	4.58048838373346	4.56550369306259	4.42370954609938	4.68614778805207	-0.103972098505102	0.805432609262095	0.95390124680061
Merged-chr10-118709870-4	chr10	118709346	118710346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153321.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.68293828715191	5.488553757087	5.65826905053858	5.31198033882459	5.31248175179098	5.06899042800581	-0.706083429563856	0.0403678750864016	0.250311509813645
Merged-chr15-97247964-4	chr15	97247453	97248453	+	831.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-666.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	7.09449479236995	6.93999227444356	6.94568889611558	6.82447334614093	6.69232418152037	6.22920676147063	-0.586754686167967	0.0397202353808585	0.247815338147581
Merged-chr19-3855993-2	chr19	3855493	3856493	+	792.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	4220.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	3.40298223843272	3.13586618880385	3.09298859821519	3.24109594848389	3.12333618614064	3.28432778579527	-0.0355001565425221	0.956187582163886	0.989807313282509
Merged-chr6-97510395-2	chr6	97509895	97510895	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-22575.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.20134877146962	5.47675360905008	5.73701337115275	6.6020825666943	6.86672176160616	6.58874419829276	2.10337472088892	2.53418288361043e-11	3.81607500423458e-09
Merged-chr3-144933266-4	chr3	144932738	144933738	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033199)	promoter-TSS (NM_001033199)	-709.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	4.661659516738	4.84962041754006	5.07163071677832	4.87605241468311	4.65300274614127	4.70755941331894	-0.260751317136893	0.523855872722225	0.848428438699863
Merged-chr5-64228309-2	chr5	64227809	64228809	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MER21B|LTR|ERVL	-2048.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.56172575830131	3.52929145304863	3.79971786321625	3.84914423655594	3.63733246144771	3.81965652580738	0.472587123493452	0.390490794351525	0.76961112307546
Merged-chr16-30416060-4	chr16	30415561	30416561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27531.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	7.56940909143396	7.43242458629607	7.36963608464504	7.69545158956962	7.92084513602743	7.43787176144173	0.358324805708689	0.147425924634699	0.512321096600569
Merged-chr6-50188189-4	chr6	50187701	50188701	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 11 of 13)	intron (NM_001361248, intron 11 of 13)	73568.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	5.88195640673226	6.15426165294774	5.49590930191115	6.2544780557039	6.52540804777787	6.19486930464321	0.76461304400702	0.0231499947182973	0.177896634698936
Merged-chr16-76356129-4	chr16	76355612	76356612	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	16937.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.69913117605462	5.45950089694511	5.16279832093086	5.64796336195962	5.74394389964241	5.30043427256974	0.222466684397221	0.545757201922066	0.85834429351586
Merged-chr19-5690585-2	chr19	5690085	5691085	+	863.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_022012, exon 3 of 12)	exon (NM_022012, exon 3 of 12)	1454.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	5.81499515501071	5.75885520753258	6.08924938144857	5.99324304247527	6.01472853336715	6.51314189906066	0.515587607541992	0.114924691014842	0.452587804955148
Merged-chr7-74908504-4	chr7	74908005	74909005	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121706.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	3.79652906353115	3.50420268927179	3.77213378819462	3.48940549363576	3.57033480088599	3.84079232541045	-0.203149472287568	0.721865846703824	0.928606209603791
Merged-chr7-140912430-4	chr7	140911947	140912947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6383.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	3.04702655078584	3.08414497209694	3.12734999946617	3.15969327194226	2.9687917220387	3.25531308377869	0.183085206375955	0.779958838420734	0.945949149660645
Merged-chr19-32788762-4	chr19	32788248	32789248	+	697.958313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	31171.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.68411581961752	5.8454336367405	5.82382435964912	5.87227864102717	5.94417129347635	5.95701076631836	0.248620785787484	0.407233425455831	0.781408565727585
Merged-chr10-27378250-3	chr10	27377758	27378758	+	965.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-11608.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	4.24341058793288	4.20332800079132	4.27072792615545	3.66797302169482	3.39775403397837	3.77046230095297	-2.06855901357618	0.000183595989676326	0.00466320363522215
Merged-chr10-59302887-2	chr10	59302387	59303387	+	933.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-20409.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.78553395805041	4.99477091286996	4.55097276377201	4.80974996663581	4.61495855436441	4.61924416758181	-0.26907898516107	0.521658365533578	0.847183372504239
Merged-chr7-35044964-2	chr7	35044464	35045464	+	672.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008820)	TTS (NM_008820)	11602.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	3.59780438593027	3.47859783097152	4.01778406821155	3.50543631680403	3.40485366532886	3.7691430996127	-0.509323260292708	0.397834791410573	0.774593722474986
Merged-chr1-64599284-1	chr1	64598784	64599784	+	599.0	f0_balb.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	17884.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	5.07416194429684	5.37962449609879	5.13614982422812	5.09582044290103	5.46540200917748	5.39191849377376	0.244065765018056	0.508074996627041	0.839590576913845
Merged-chr10-81399961-2	chr10	81399461	81400461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	6897.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	2.68266932652987	2.60743276309433	2.70521099744977	2.4831031476179	2.52895062620226	2.59220808051368	-0.756484444789145	0.324865437336686	1
Merged-chr11-53783436-4	chr11	53782930	53783930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12957.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	7.08234473129471	6.81336936866735	6.99425011996882	7.33084398096975	7.53499087587832	7.28981328174297	0.643023514768736	0.00909959232938505	0.0942865055428202
Merged-chr11-32650548-4	chr11	32650048	32651048	+	975.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	7993.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	5.47467933524083	5.38618930638193	5.51360999905222	5.59555539601195	5.70646256173631	5.97212356501399	0.56610823822734	0.0849357170916639	0.385892421128607
Merged-chr7-80115382-4	chr7	80114872	80115872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173011)	promoter-TSS (NM_173011)	-22.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	5.93118927011366	6.05653561721604	6.45069868189547	6.05051344635432	5.96048247839896	6.13696393059695	-0.182667243855096	0.558051675273773	0.864474137025359
Merged-chr10-54115477-2	chr10	54114977	54115977	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	39555.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	2.87435381850095	2.88178507712469	2.58043211359821	2.82201994922613	2.79514076893467	3.09025583941115	0.566712726986666	0.461014838847804	0.81482056822397
Merged-chr15-101174425-2	chr15	101173925	101174925	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007395, intron 1 of 8)	CpG	353.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	5.59402119879079	5.15479535750181	5.52360627937857	5.85369233414054	5.02331091614849	5.61352596704643	0.196446741320908	0.631203996026911	0.895063064307722
Merged-chr3-106759334-2	chr3	106758834	106759834	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007651, exon 8 of 8)	3' UTR (NM_007651, exon 8 of 8)	30815.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	3.7865092128161	3.50379155021211	3.55728929225212	3.81218212869284	3.80746523569049	3.4549058036658	0.288568431968438	0.62007591529835	0.890023686663772
Merged-chr16-23592685-3	chr16	23592203	23593203	+	833.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17216.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	5.38006007362665	5.34481860229602	5.4942139160817	5.37201934050662	5.42084688900255	5.73859239426165	0.206809364148185	0.544845397213574	0.857895653540487
Merged-chr12-40536206-7	chr12	40535642	40536642	+	866.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	MLTR11A|LTR|ERVK	90089.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.72868685760344	5.38581881508998	5.70609585767316	5.70726164905359	5.66467180016607	5.79292030622516	0.198188508908631	0.543780090764761	0.857551302506722
Merged-chr7-80090456-2	chr7	80090012	80091012	+	910.5499880000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-15255.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.61368033254997	3.4306958500607	4.03386607369476	3.59262927702303	3.33172993934157	4.18232846446815	0.11568494954083	0.860793076358322	0.9676427717189
Merged-chr6-108702794-4	chr6	108702306	108703306	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41872.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.71903472540447	3.34888225993082	3.61256395940914	3.78231965814288	3.22900708850612	3.40529784876393	-0.266305057136816	0.675383326825741	0.912152821313949
Merged-chr3-115816075-4	chr3	115815567	115816567	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71992.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	6.75879593972548	7.06406247570409	6.28392315433298	5.94028011418415	6.24505399833844	5.4360985285356	-1.33768920652911	0.000465694067055517	0.00994412978533557
Merged-chr11-100849257-2	chr11	100848757	100849757	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	MIR3|SINE|MIR	1328.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	4.85862953063521	5.00384632702139	4.9730328863471	5.65855544892382	5.64559332856493	5.25441695577216	1.20512146074443	0.000906910754600021	0.0167136722189941
Merged-chr7-19267223-4	chr7	19266721	19267721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	4633.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	7.34811012969084	7.17591382563632	7.40172785002462	7.54569492883638	7.56964592654133	7.61598600009412	0.394862257790195	0.0829392439392815	0.380987557121549
Merged-chr15-99342820-4	chr15	99342322	99343322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	27660.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	4.96472907522771	4.72291875547746	4.71787773720818	4.89528304354073	4.54067760055696	4.93383499259956	-0.0443851223376107	0.915077636929547	0.980959026698783
Merged-chr12-54655628-4	chr12	54655122	54656122	+	945.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134054, intron 1 of 1)	intron (NM_134054, intron 1 of 1)	950.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	6.10671239532198	6.61546008455773	5.98488863456353	6.41484600044622	6.47450971511965	6.27383137020898	0.189181539350759	0.552021845498639	0.861546661145201
Merged-chr2-4591142-3	chr2	4590658	4591658	+	720.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	31404.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.08824556463824	4.14196263084074	4.58216388803413	4.4919464638145	4.61568250914855	4.79336532305857	0.912215373711085	0.0502800821429411	0.285358738448019
Merged-chr14-55781884-2	chr14	55781384	55782384	+	735.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_001361604, exon 3 of 26)	exon (NM_001361604, exon 3 of 26)	2188.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	3.70777937602271	3.63971544857601	3.85643408726823	3.60719642097528	3.58131707067359	3.87728068871849	-0.1522588373523	0.781714378968289	0.946284883776141
Merged-chr5-121564595-4	chr5	121564100	121565100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18708.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	4.25257766416989	4.41905541586191	4.06233474288687	4.07662019173878	3.95365971035985	4.03185305917933	-0.68947429818284	0.156234087487884	0.526547286309362
Merged-chr6-125330760-2	chr6	125330260	125331260	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	9420.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	5.57834242917686	5.6974850634342	5.93868428787515	5.82752419708956	5.69393296312323	5.78631582792238	0.0567727360925089	0.858155190103302	0.966839848129809
Merged-chr17-72918280-4	chr17	72917793	72918793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-12.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	8.38030892611473	8.71113868978506	8.14019677752489	8.34073694591709	8.52777869927998	8.35670286336587	-0.0362394800452995	0.881094766505493	0.97262624933271
Merged-chr9-108640012-4	chr9	108639511	108640511	+	859.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	9397.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	4.34275929308544	4.25749260777184	4.36708656746849	4.34774218465915	4.35240947995319	4.20755121094824	-0.029229936690902	0.948020000190619	0.988024000499268
Merged-chr15-78587475-4	chr15	78586969	78587969	+	997.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5880.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	4.90729639297662	4.60489008450576	4.81823544787273	4.98309566039316	4.91715393440395	4.76741507006557	0.260846291551895	0.512331859668666	0.841860053306022
Merged-chr4-8535628-4	chr4	8535129	8536129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021518)	promoter-TSS (NM_021518)	-15.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	7.65393026522202	7.36822109068121	7.31058681611521	7.61000452632193	6.97615384426275	7.47512468198835	-0.116136139974266	0.6797034717031	0.914024131867986
Merged-chr9-99075185-2	chr9	99074685	99075685	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 8 of 23)	(CAAA)n|Simple_repeat|Simple_repeat	-39495.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	4.98203570199728	5.11652349381558	5.32079045687427	5.21030048992394	5.05770803544085	5.13353296062373	-0.0100918085829247	0.97804249763879	0.994994154947079
Merged-chr12-71831734-5	chr12	71831237	71832237	+	907.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026102, intron 1 of 25)	CpG	669.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.96224062446906	6.18254032706324	5.5410872090429	6.33216888651522	6.2028760848575	5.60617305358139	0.27518579593	0.458613307326693	0.813149567986521
Merged-chr17-17881491-4	chr17	17881018	17882018	+	730.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	2421.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	6.12972417138948	6.34374945004276	6.03648118819812	6.49338135890876	6.57611214202152	6.65653452631247	0.635647017788056	0.0229879406517813	0.177192333301331
Merged-chr2-4501879-4	chr2	4501414	4502414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	HAL1|LINE|L1	-57840.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.25181627493942	5.93669276548585	6.20556615401922	6.41407727053725	6.39071727551248	5.99637827220745	0.261072792327488	0.391829910742627	0.770775156449779
Merged-chr16-35056965-4	chr16	35056399	35057399	+	844.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 3 of 6)	intron (NM_023587, intron 3 of 6)	34478.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	3.53951410569422	3.75851103181091	3.35536865654443	3.52663958232339	3.38126207800875	3.69978508970209	-0.121180803678706	0.84057295354575	0.962819298477451
Merged-chr13-59676962-4	chr13	59676398	59677398	+	880.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1114.0	NM_027307	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	2.72435870067557	2.82499995877914	3.03822368693889	2.88590652496399	2.74002492478281	3.32247060701031	0.632428581687787	0.399637387827671	0.775995820989774
Merged-chr10-41304280-1	chr10	41303780	41304780	+	608.0	f0_balb.idr	Intergenic	Intergenic	-1039.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	5.20329142146028	5.38295322079556	5.44228727394132	5.34390809254435	5.67215470541899	5.1138809328692	0.139659510272044	0.706150447393519	0.922878730238431
Merged-chr9-85328547-4	chr9	85328055	85329055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1405.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	7.60852781082664	7.66916434511747	7.52262114804904	7.66106169488323	7.82882326906263	7.6089134604266	0.150102777616399	0.503017136674029	0.836699382463869
Merged-chr15-58888999-4	chr15	58888485	58889485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175226)	promoter-TSS (NM_175226)	-244.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	8.32262592882605	8.09029756562261	7.80939358101983	8.20043753777551	8.01510973161655	7.85704960395085	-0.0890270464027495	0.718728819560169	0.927452430414108
Merged-chr4-55624238-2	chr4	55623738	55624738	+	688.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-91763.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.87779709663556	5.14636671444046	5.04045085911994	4.70287983863841	4.77959941828019	5.26088091034291	-0.218959499862853	0.594225705358783	0.878932228095167
Merged-chr7-67230953-2	chr7	67230453	67231453	+	818.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001291191)	TTS (NM_001291191)	8337.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.59315957335674	2.55458493479382	2.81186251851744	2.62280887251745	2.50937731764146	2.82589592046331	0.00181870599978632	0.998122494633258	0.999590080903912
Merged-chr1-173420520-4	chr1	173420030	173421030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-74.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.14490733790764	7.31558921347295	7.050980123178	7.2837046752238	7.58494153771743	7.1485656096134	0.270607164674753	0.293298682800246	0.690221391260893
Merged-chr9-109017332-4	chr9	109016830	109017830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-21237.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	5.41641961637603	5.25369128690409	5.40456834339979	4.95917168880266	5.10426326812863	4.97636382635592	-0.690729994039305	0.0542497481096982	0.299079907288926
Merged-chr18-40267194-2	chr18	40266694	40267694	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	8833.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	3.89787838588875	3.93074935152628	3.84548971791942	4.42221948677005	4.41160444838073	4.26772428081053	1.36245224077679	0.00460681296732298	0.0578689150641622
Merged-chr17-6778446-4	chr17	6777939	6778939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	4341.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	7.23479934084842	7.40551267080821	7.07564790008317	7.11982486581029	7.62690059667206	7.44733975076067	0.25023496454155	0.345756637254191	0.734164857545786
Merged-chr16-33746318-2	chr16	33745818	33746818	+	829.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-47719.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	4.36787091578185	4.65142818506347	4.85832998444695	4.72275263237332	4.63634160034791	4.74164358754703	0.157367062619023	0.712708942965494	0.925266716922386
Merged-chr17-26113320-4	chr17	26112815	26113815	+	995.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021793)	promoter-TSS (NM_021793)	-1.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	5.10720094356835	4.82514760609647	4.66025897188287	4.88906206186665	4.27206314904354	4.46313163948617	-0.730434076170943	0.114245093422751	0.451407710729328
Merged-chr15-64092750-4	chr15	64092244	64093244	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 27 of 28)	intron (NM_001276461, intron 27 of 28)	-32296.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.22653899107452	4.77072546574154	5.04142176601738	4.72706506441083	4.55412671111921	4.82164030561406	-0.739757177305273	0.072161376785509	0.352826644703763
Merged-chr11-4710235-4	chr11	4709662	4710662	+	861.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	5506.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	2.50991164350676	2.50823500829654	2.509901726822	2.57510152734201	2.52177327815565	2.94444654066143	1.00195562797916	0.208379504677655	1
Merged-chr2-165319702-4	chr2	165319174	165320174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1152.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	8.5892585349586	8.63635502304217	8.30560261158727	8.29432236678501	8.85588082885775	8.36107529836718	0.0198520336161475	0.937713319616815	0.986132276939678
Merged-chr13-49215590-1	chr13	49215090	49216090	+	1000.0	f0_c57.idr	intron (NM_026738, intron 1 of 5)	CpG	436.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	8.05267405457155	7.98599026923067	7.60735265191666	7.76367516034813	7.6771814112535	7.46838821614536	-0.369463062769942	0.133061402906774	0.488044309841613
Merged-chr19-9910746-2	chr19	9910246	9911246	+	750.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-11213.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	2.88053252215776	2.56631503428067	2.91545279509364	2.78078588120397	2.89825477245929	3.0451314948369	0.57257499270329	0.444363738270513	0.804158035358769
Merged-chr5-121835544-4	chr5	121835005	121836005	+	979.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	599.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	7.46094666234657	7.50009239569504	7.73667054669445	7.69504398120203	7.93009152310813	7.50358712495151	0.236955722098026	0.334338404828006	0.724883973366998
Merged-chr1-165682161-4	chr1	165681639	165682639	+	935.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25955.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.72145962829885	7.60518256328886	7.66796513534356	7.54694139028818	7.8114662871579	7.79365792461901	0.0839022950442097	0.710288983123	0.924293540432205
Merged-chr14-27339136-2	chr14	27338636	27339636	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	3099.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.65470841523576	2.61850116406413	2.66445058076484	2.85718627042878	2.81896210764966	3.03927444117355	1.37134415492046	0.0633909301794317	0.327963223177899
Merged-chr11-115658863-4	chr11	115658474	115659474	+	820.363647	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-30679.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.09007983295245	5.89688486201722	5.84695234886639	6.30465056776766	6.38257176234679	6.21130496160022	0.596505723371505	0.0391520101185529	0.245405684214279
Merged-chr3-144716060-4	chr3	144715544	144716544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	4291.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.35560508036563	6.50295200183235	6.28885509082019	6.92921179329814	6.75744800095441	6.69655634268775	0.649429756390459	0.0145665450902892	0.129951011458431
Merged-chr15-43282417-2	chr15	43281917	43282917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 1 of 12)	CpG	319.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	7.50824785304337	7.86293222971006	7.45298272423304	7.42740477003539	7.58126707254977	7.00067162166011	-0.374144276480146	0.176124259702813	0.556291656595492
Merged-chr16-30071896-2	chr16	30071396	30072396	+	747.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	6539.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	2.43386144630164	2.43290591176342	2.49538681189186	2.49579504855146	2.33020931079047	2.80408131489337	0.596517086266492	0.471383188302843	1
Merged-chr9-110682557-4	chr9	110682054	110683054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	MIR|SINE|MIR	26051.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.15973396848302	5.19292533710455	4.9014400923441	5.98403983338909	5.86677078878554	5.80303234943293	1.49173416153872	1.46670508795042e-05	0.000557013222082055
Merged-chr17-81702754-2	chr17	81702254	81703254	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	PB1D10|SINE|Alu	35633.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.07580574696522	6.3557810290629	6.65540300001304	5.9147867027352	6.23431321073511	6.31142613507173	-0.352914816972196	0.268223176068276	0.665319558653313
Merged-chr12-8947862-4	chr12	8947389	8948389	+	893.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-40.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	3.95729392164717	3.98438124463519	3.79778784698991	3.95732914665956	3.81240304895955	3.91982040441103	-0.0838520191596087	0.86928047861587	0.969788171765313
Merged-chr9-100456491-4	chr9	100455982	100456982	+	902.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	29991.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	5.35914125993248	5.48313797029321	5.83992894805662	5.37378429609375	5.3391658220077	5.63584384905125	-0.224616630917754	0.526187961245589	0.849338088345222
Merged-chr3-21935665-4	chr3	21935148	21936148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141004.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.79147251278797	8.17827284746899	7.75909300961749	7.94514558277731	8.38741997140039	7.77985751967226	0.203592793043254	0.454311632316705	0.810166358804294
Merged-chr10-20000525-2	chr10	20000025	20001025	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	65999.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	4.79958281464197	4.57852521864576	4.39539959716181	4.89002365469868	5.27397392832256	4.77851382581708	0.898511995022918	0.0390942099569623	0.245171594457532
Merged-chr16-44989267-4	chr16	44988759	44989759	+	751.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45581.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	4.53578184623299	4.25833445848287	4.08647096064557	3.86827761088014	3.59525864531554	4.24813508792919	-1.1223890091842	0.0429756325271847	0.260009920113574
Merged-chr1-59475789-4	chr1	59475279	59476279	+	915.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6368.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	4.80518064293303	4.83519649182076	4.57643550179573	5.60331748688095	5.63652437146839	5.07019197611336	1.49195220503121	0.000208270712994668	0.00517616173442663
Merged-chr18-46280737-4	chr18	46280237	46281237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172627, exon 1 of 9)	exon (NM_172627, exon 1 of 9)	113.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	7.94826775019883	8.1141452869083	7.94719124835545	8.3057249192066	8.29100869064117	8.29159974702459	0.405483486609237	0.0509683170606605	0.287660023467642
Merged-chr15-76870913-2	chr15	76870413	76871413	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001007568, exon 1 of 4)	5' UTR (NM_001007568, exon 1 of 4)	522.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	5.27280244552521	5.56193628479605	5.16301442430181	4.78580600498333	4.842431794728	4.78054903337554	-1.15605140525334	0.00242999854838309	0.0359202912087156
Merged-chr9-71953853-1	chr9	71953353	71954353	+	684.0	f1_c57bl6.idr	intron (NM_011544, intron 5 of 20)	B1F2|SINE|Alu	-57757.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	3.93504876651688	4.21109667247615	4.00928495576532	4.05989293218398	4.00183285784238	4.12596364596552	-0.00559498890371815	0.990912662394589	0.998113069044251
Merged-chr19-10306370-2	chr19	10305870	10306870	+	867.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1493.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.07515183582252	3.85808494838351	3.80816507644025	3.56688288998673	3.46542307036013	3.49411780687642	-1.42528889522335	0.0109357176724598	0.106989282083005
Merged-chr19-16128928-4	chr19	16128422	16129422	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3909.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.74631675220674	3.3367436063462	3.3156646517319	3.45245597758227	3.45829747134993	3.66505529856804	0.131844012770881	0.830239270795453	0.960219727001139
Merged-chr7-28380297-4	chr7	28379806	28380806	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1078.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	8.53619168411091	8.82152525302143	8.59693031871006	8.62493349951416	9.20265641171742	8.85744608905789	0.360984270487026	0.137968940569171	0.496459073122278
Merged-chr15-11716324-4	chr15	11715792	11716792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	189382.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	5.54613577711242	5.84066324445699	6.18624176613238	5.84403037886087	6.17053819647788	6.01777884246152	0.260896842652801	0.440534141740995	0.801871784087343
Merged-chr11-29172245-2	chr11	29171781	29172781	+	942.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-626.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	5.42740776615242	5.8827853355978	5.49042952664227	5.24722434363773	5.66237533775282	5.66486664439701	-0.156513524756509	0.666579393791309	0.9082780021178
Merged-chr8-70619030-4	chr8	70618521	70619521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	2177.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	7.27995952644612	7.04725444723916	6.93233249467241	7.27215130350266	7.44565151915421	7.21643583639195	0.327576306509434	0.190076197004269	0.576216758852106
Merged-chr15-78582042-4	chr15	78581533	78582533	+	921.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	-444.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	5.76154264292192	5.70886613987834	6.10967789852435	6.20012415312672	6.12913603092803	5.99454174712271	0.445471404328587	0.148385316466641	0.513916562437307
Merged-chr14-47362896-1	chr14	47362396	47363396	+	583.0	f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.66931120167552	5.53670365016692	5.55593706079266	6.86885403991936	7.02852593802252	6.74051538729054	2.1729823322392	4.37506994516826e-14	1.05825819766733e-11
Merged-chr15-25531114-4	chr15	25530608	25531608	+	994.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91442.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.59774763238685	4.29158476271522	4.31884314377738	4.26159943755894	4.32466858476072	4.43049116257568	-0.20178777926009	0.655946389336315	0.904511343918715
Merged-chr15-64242148-3	chr15	64241645	64242645	+	907.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	70528.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	7.0343218413631	6.74733688372273	6.71694610431113	6.94134001420588	6.86678085918921	6.9265286155119	0.0980379430055703	0.702402115195695	0.921908665861083
Merged-chr5-30013065-8	chr5	30012569	30013569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031168)	promoter-TSS (NM_031168)	-45.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	6.48557827364729	5.98895408610779	6.80645014886536	6.89083586945906	6.89372978756191	6.74677329876247	0.612502082443864	0.0523555950152099	0.292592138493222
Merged-chr12-84996286-4	chr12	84995801	84996801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178363)	promoter-TSS (NM_178363)	-20.0	NM_001347421	56531.0	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	5.9064284560814	6.32367719907499	6.094012043066	6.33657204132558	5.90295106604947	5.97077579796609	-0.0645989956631198	0.840691109021512	0.962819298477451
Merged-chr1-91269170-3	chr1	91268667	91269667	+	596.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 5 of 10)	intron (NM_001355764, intron 5 of 10)	18601.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.06292267395022	3.29307072130598	3.42916135674394	3.28313010609505	3.12445992724737	3.10616106890616	-0.380019063309624	0.559161744783862	0.864901733108576
Merged-chr11-63134772-2	chr11	63134272	63135272	+	727.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	1969.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	2.84181336926274	2.83693047172156	3.05700964618987	2.86829097068057	3.22111824478124	3.29385451318872	1.04583118079057	0.138718218416664	0.497674888449209
Merged-chr5-45450388-4	chr5	45449905	45450905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-176.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	6.47513529077633	6.52885780428825	6.10185905712989	6.28230653813881	6.19460972091346	6.2502962057991	-0.253560056803578	0.380021380433175	0.762279329390436
Merged-chr3-87885747-4	chr3	87885243	87886243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033573)	promoter-TSS (NM_033573)	-181.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	6.56479754463246	6.92046828265777	6.53347820323535	6.81307774883288	6.6050779009003	6.80468525544491	0.0724529489633305	0.7928971523083	0.950117552895212
Merged-chr15-98514659-2	chr15	98514159	98515159	+	695.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5175.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	4.35676400126448	4.37346047793655	4.77815419177649	4.45153827499498	4.46395052037028	4.45934059939784	-0.115823614367921	0.795275496009828	0.951079860758379
Merged-chr16-36634745-2	chr16	36634245	36635245	+	765.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	31332.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.76999989867581	4.58984188888014	4.98557403319516	5.51752577587464	5.83187905660833	5.44594259929445	1.73055215934112	4.50213772667334e-06	0.00020227531099408
Merged-chr11-89025247-2	chr11	89024747	89025747	+	940.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	25844.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.64468103965824	7.75718163631103	7.90339372061483	7.6057678536065	7.78742098905565	7.76815862188007	-0.0649334703875204	0.773123274593517	0.943981747443949
Merged-chr19-36927261-2	chr19	36926761	36927761	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	1182.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	7.22105839557709	7.67010866552873	7.09193762029129	8.25128973930656	8.66411024683466	7.72305181384111	1.30996564748845	3.55782204768462e-05	0.00118700584179528
Merged-chr13-119596955-4	chr13	119596431	119597431	+	913.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26888.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.0995529820112	2.98302841128194	3.44855033272312	3.16824554648863	3.01986114860803	3.66221566119367	0.479010558129414	0.498441802457214	0.833865667012175
Merged-chr8-95852497-4	chr8	95851986	95852986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	1005.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	6.81953608575166	7.21167007826064	7.13068781465458	6.81887832202794	6.98817215669184	6.7584926267501	-0.303678536091427	0.250752441546681	0.648153521953385
Merged-chr11-69999469-2	chr11	69998969	69999969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001291127, exon 4 of 4)	3' UTR (NM_001291127, exon 4 of 4)	-1157.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	4.5683805680069	4.71085510201523	4.68536581279439	4.63508186559691	4.8226497471468	5.03608002865809	0.413916293932633	0.312192479631987	0.707047137866586
Merged-chr13-80885635-4	chr13	80885142	80886142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	-453.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	9.60731974916501	9.80896223107372	9.06881288771856	9.16655329154796	9.6331235394499	8.98496143850979	-0.323289674353556	0.2529429247216	0.650358193791754
Merged-chr19-32309008-2	chr19	32308508	32309508	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	RLTR11A|LTR|ERVK	40308.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.83872333972981	3.11795467454643	3.03176702591299	2.88516290010143	2.71851224021857	2.92654080294464	-0.783186489171069	0.27274362310942	0.669951714189667
Merged-chr7-98362257-4	chr7	98361725	98362725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-897.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	5.49963716519455	5.4816311570798	6.03241750140065	5.55776975402707	5.7748193639123	5.2830135453987	-0.221507764406759	0.553437992782196	0.862251545920931
Merged-chr13-59557382-4	chr13	59556887	59557887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284218)	promoter-TSS (NM_001284218)	-40.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	5.17154994220814	4.53008134008577	5.25926299551417	5.24276173935885	4.57233309900275	5.03754830392855	-0.0936324216326906	0.841614259346689	0.962988975342446
Merged-chr6-86548118-4	chr6	86547600	86548600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20699.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	5.23660814812591	4.76945119833553	4.94936428758669	5.77059863063602	5.99042617238019	5.31188945935517	1.42406961594591	0.000327075979924232	0.00748085160460019
Merged-chr9-103202092-4	chr9	103201586	103202586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009275)	promoter-TSS (NM_009275)	-21.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	6.15121783858842	6.32529759461836	5.8916640375715	6.36585557134488	6.11371376745776	6.12150861731288	0.0998801836399186	0.742055890354593	0.935102057855142
Merged-chr10-13948383-1	chr10	13947883	13948883	+	588.5	f0_balb.idr	Intergenic	Intergenic	-17692.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.63298482021762	2.35509298578934	2.624977056887	2.60588400959573	2.53540970080533	2.69847967051946	0.40121268634068	0.614014004576123	1
Merged-chr10-77968963-2	chr10	77968463	77969463	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	909.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	6.1801619606023	6.55556415853007	6.72019252783865	7.11655281036924	7.16801728771577	6.80994143732312	0.858871486293876	0.00281441645032689	0.0400653488449614
Merged-chr17-47694925-4	chr17	47694447	47695447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290337)	promoter-TSS (NM_001290337)	-211.0	NM_001290337	381104.0	Mm.392206	NM_001290337	ENSMUSG00000096549	Prickle4	Gm939	prickle planar cell polarity protein 4	protein-coding	5.44944182778301	5.0908852150017	5.18760139611755	5.15574607652186	4.77723364289318	5.0109818729148	-0.564479383735348	0.143787149784839	0.506187221158269
Merged-chr6-122635558-4	chr6	122635089	122636089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9165.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.83052695982651	6.78019527028422	6.80806503113203	6.98170417866171	7.5147950460105	7.0115108613969	0.607612739824213	0.027407563882586	0.197367795619689
Merged-chr19-55587936-4	chr19	55587450	55588450	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	114254.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	5.57632127668771	5.13553216954704	5.3311603524504	5.04863846686913	5.13951412321069	5.33356748361145	-0.38105511031626	0.303333345161311	0.699902971652469
Merged-chr7-122310388-4	chr7	122309893	122310893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	21268.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.37016074232158	6.55950897398008	6.23858760493556	6.65115457719474	6.73653390581096	6.25613563226155	0.277999641886567	0.344154826785085	0.732933245300436
Merged-chr2-152780021-2	chr2	152779521	152780521	+	633.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289717)	TTS (NM_001289717)	25848.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	3.37477460321422	3.13897379780404	3.35174715987422	3.88944045275495	3.34006228080118	3.24296445525382	0.874315786116436	0.185670623347796	0.569911016727934
Merged-chr19-4865335-3	chr19	4864821	4865821	+	799.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013456, exon 12 of 21)	exon (NM_013456, exon 12 of 21)	10192.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	2.56429072721131	2.52223298858553	2.70588216035175	2.47440025910318	2.38650412167362	2.53284216771839	-0.809792037694698	0.306888804428176	1
Merged-chr7-98953830-4	chr7	98953320	98954320	+	910.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	114975.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.82062597350681	3.59316334492447	3.43645573581599	3.46863390570212	3.44548347521933	3.67291913418785	-0.374301684772695	0.522517471738087	0.847644119032093
Merged-chr10-75677044-4	chr10	75676548	75677548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33040.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	7.07218265162579	6.94782958768209	7.05978798452786	6.66710637006595	6.88425335340879	6.91774242107453	-0.306333439441561	0.219536752382216	0.613735463896719
Merged-chr11-49859419-2	chr11	49858919	49859919	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016961, intron 2 of 11)	L1MEg|LINE|L1	12668.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	3.93537247267045	3.86895668307325	4.28370906139557	5.20873902909288	4.8385182008666	5.17855873941612	2.70961853954062	1.31806900044946e-08	1.15934339735094e-06
Merged-chr8-46000001-4	chr8	45999505	46000505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039562)	promoter-TSS (NM_001039562)	-155.0	NM_001039562	654824.0	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	5.58970471848181	5.62491357974329	5.77656067307163	5.50373406053777	5.49701032214845	5.66135199878356	-0.206510410282351	0.519437450363143	0.84582839931823
Merged-chr2-101628441-2	chr2	101627939	101628939	+	840.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_009020, intron 2 of 2)	intron (NM_009020, intron 2 of 2)	547.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	5.1313512011317	5.46236904936181	5.3444735331617	5.33480934431732	5.36783880864033	5.40767114095819	0.0953038826330014	0.784077504348211	0.947434735607995
Merged-chr12-59133209-2	chr12	59132709	59133709	+	948.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165253, intron 1 of 22)	B3A|SINE|B2	1756.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	5.99911987638164	6.30165585022863	6.16466186245797	6.35191299888537	6.70018218165496	6.26767940102586	0.500604590192832	0.0953338605993263	0.411545518689948
Merged-chr8-111892491-2	chr8	111891991	111892991	+	982.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019950, intron 1 of 1)	intron (NM_019950, intron 1 of 1)	-15816.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	2.38131643030463	2.44515228613842	2.68420025444075	2.4429528434454	2.20939461600137	2.45040059161731	-0.863371415734122	0.310500212180673	1
Merged-chr17-28694889-4	chr17	28694382	28695382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	2314.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.34094202830484	6.12970189615554	6.12883367145431	6.13375430784954	6.42503036063106	6.42675541946897	0.214568651039364	0.457269068981108	0.812185298776444
Merged-chr14-68611528-2	chr14	68611028	68612028	+	726.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_102399, intron 17 of 21)	MTEa|LTR|ERVL-MaLR	-29456.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	3.42357031591739	3.41130803240644	3.50614508555642	3.28628868417122	3.35716548438778	3.3012082138944	-0.497591919103421	0.403093060782577	0.778546630802364
Merged-chr18-84854073-4	chr18	84853519	84854519	+	858.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	2681.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	3.59450542680139	3.4540389378642	3.3885791886145	3.64715094167954	3.35651555075598	3.62593200892672	0.212698565573485	0.718211724905872	0.927293456311605
Merged-chr11-75534511-3	chr11	75533972	75534972	+	867.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	2360.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	7.03135480493377	6.94069174904005	6.99619085944851	7.02559771816241	7.40983935400078	6.99935576344878	0.273216392694245	0.29158786479921	0.689176056077622
Merged-chr15-99818715-5	chr15	99818236	99819236	+	765.700012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	1413.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	6.12522426629964	6.43031565572939	5.99035486029	6.46542454515785	6.95218745835614	6.68510866712628	0.833960906334888	0.00658189942706059	0.0747157827458196
Merged-chr15-80784667-2	chr15	80784167	80785167	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144812, intron 3 of 24)	intron (NM_144812, intron 3 of 24)	-13943.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.18079760840764	4.17829196926749	4.07528907825563	4.21435114656223	4.20946453840004	4.0451580018763	0.0415094549924239	0.929890255026448	0.984318296592424
Merged-chr1-16797495-2	chr1	16796948	16797948	+	678.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	108992.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	3.01308896243288	2.63761921574085	2.98693090946797	2.87493392917379	2.65421270781389	2.62288772149522	-0.846647135082161	0.275527332288824	0.673068880587683
Merged-chr6-83647692-2	chr6	83647192	83648192	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	MER5A|DNA|hAT-Charlie	8424.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.57760888518873	6.07615884212198	5.95258681209327	5.76098329644179	5.63551025611594	5.69305443757165	-0.342003932491558	0.300532000813951	0.697311691851564
Merged-chr2-30414960-2	chr2	30414460	30415460	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007760, intron 1 of 13)	intron (NM_007760, intron 1 of 13)	788.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	6.12131997182489	6.04197464339542	5.91668725601595	6.00904159863243	6.00242143998789	5.90431309604843	-0.102405922939073	0.725902358708675	0.929743505822386
Merged-chr16-93882678-2	chr16	93882178	93883178	+	716.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1223.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	2.89591089139142	2.90656995857547	3.02105821218374	2.87657302023488	2.89650261567577	2.85382350381997	-0.301879079175524	0.661081954199766	0.906260725325043
Merged-chr16-20424318-4	chr16	20423791	20424791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	2103.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	7.05216598526385	7.41372111677148	6.84000888700804	7.27171476471201	7.63139127543901	6.97512896885838	0.295804569343559	0.32645677872647	0.71871363873492
Merged-chr6-83641246-2	chr6	83640746	83641746	+	934.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	14870.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.01769894457128	4.70911944279708	5.25371774748764	4.7861946851778	4.68456699417344	4.74569982280326	-0.589918884700292	0.152263369758366	0.520263755512759
Merged-chr10-96614319-2	chr10	96613819	96614819	+	596.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-2682.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	2.59456117218214	2.61547541113086	2.45541529789231	2.58803844366045	2.56315543813919	2.84275496151537	0.589308537610903	0.453543817771426	1
Merged-chr13-58214872-4	chr13	58214386	58215386	+	912.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	767.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	6.71552289395929	6.83253365634937	6.47408953028761	7.01579909543407	6.72090823655736	6.70991396986118	0.20729877836914	0.447916616425974	0.806889928979702
Merged-chr2-153197285-2	chr2	153196785	153197785	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 12 of 17)	intron (NM_133847, intron 12 of 17)	28156.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	3.78899001361565	3.7982152966403	3.76430493736046	3.64259129639195	3.35096006926996	3.57016856133921	-0.924129277718087	0.101367472383674	0.424638626949352
Merged-chr4-63883443-1	chr4	63882943	63883943	+	601.0	f0_balb.idr	Intergenic	Intergenic	-22159.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	2.72794866812276	2.55525105902216	2.84491720575077	2.60852377780631	2.62853550739126	2.7994665239134	-0.175454478733392	0.816457360510529	0.956666864565081
Merged-chr10-118868613-2	chr10	118868100	118869100	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001014390, intron 1 of 2)	CpG-1533	303.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	9.02874783529462	8.82175524244978	8.63614127544425	8.94087229264254	8.8063686236903	8.90162078303526	0.0548270751964052	0.797641100681347	0.951799370596145
Merged-chr2-49393566-2	chr2	49393063	49394063	+	564.166626	f0_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-57923.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.12761860569827	3.10424821582525	3.5916100007075	2.98600737490488	2.98455397946831	3.25629132693846	-0.888251088351497	0.197391006703603	0.585372770414756
Merged-chr12-4163967-2	chr12	4163467	4164467	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	B1_Mus2|SINE|Alu	29814.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.09705700174463	4.49477495723748	4.43220113134812	3.65972899042032	3.58706482301054	4.022691218676	-1.80498698445757	0.000918154348995486	0.0168611315540094
Merged-chr16-97540416-3	chr16	97539913	97540913	+	749.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	4330.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	3.5210278339294	2.96611957509733	3.6408909694218	3.17427879793107	3.12589710721666	3.35262819941073	-0.734665111170583	0.290242569394267	0.687911348567469
Merged-chr11-113165351-2	chr11	113164904	113165904	+	830.5	f0_c57.idr|f1_balb.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	36434.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	2.20438217091382	2.06292124969285	2.22523946316804	2.29992185925221	2.31264150423822	2.49271204033345	1.43741906072613	0.10502435544429	1
Merged-chr7-134692053-2	chr7	134691553	134692553	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	MLT1C|LTR|ERVL-MaLR	21366.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	4.43538224285634	4.56795744755998	4.2889813319163	4.59968979029721	4.51295061933724	4.84635303691888	0.507132270129457	0.248329230994548	0.645476029382554
Merged-chr2-49424997-4	chr2	49424505	49425505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26481.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.92135260664512	4.74946557893618	5.23956324484415	5.26873119264339	4.8232960833844	5.54862483375554	0.541804128627714	0.204779522117665	0.595467219163608
Merged-chr14-70577715-4	chr14	70577222	70578222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-102.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	8.67478631945366	9.00517555529236	8.42015275916801	8.5031195837294	8.58652384885566	8.2505426538144	-0.372922579902312	0.13213462396323	0.486188104304079
Merged-chr19-55834980-3	chr19	55834466	55835466	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-60355.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.60959325476493	3.30206609788617	3.78813644459308	3.48982169113598	3.20989958094503	3.56105344416507	-0.559794583328102	0.370269890568849	0.75468690157258
Merged-chr19-40666025-4	chr19	40665533	40666533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	6263.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.30776449805523	5.97144797922606	5.97278671982443	6.23198806904936	6.02871104431823	6.21036740361355	0.0934871526232804	0.756276412070664	0.939545863427369
Merged-chr1-190927945-4	chr1	190927445	190928445	+	972.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-545.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	7.84673353364734	8.33245390456484	7.77326474733213	7.83354641302444	7.99322770679394	7.35944733733552	-0.356364476774229	0.214610450583658	0.607763473288578
Merged-chr7-122415605-4	chr7	122415097	122416097	+	939.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	126472.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.54795605306877	3.48394325543776	3.33399903890787	3.54552432880543	3.51542975570906	3.68117755057097	0.413365018558732	0.474939230264486	0.821727753368561
Merged-chr7-64061340-4	chr7	64060860	64061860	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92475.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	3.23541295764903	3.14522467348668	3.0844886301197	2.88757425459121	2.56369323264694	2.97837425884858	-1.71526947057107	0.0281056178721168	0.200480094667476
Merged-chr3-96172475-4	chr3	96172005	96173005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-1.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	7.70666930384239	7.95836793282789	7.71503068683369	7.68539745600045	7.87173580663489	7.75395803251127	-0.0389468463246247	0.863691623923124	0.968269312109804
Merged-chr18-32394554-4	chr18	32394033	32395033	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	LTR16B|LTR|ERVL	-16249.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.02203887286746	3.98702006386067	4.06778664039447	4.05767025521095	3.53711637109833	4.34954830675379	-0.0177980582462293	0.975144828810455	0.994454548709104
Merged-chr15-65810952-1	chr15	65810452	65811452	+	640.0	f0_balb.idr	intron (NM_133766, intron 1 of 22)	intron (NM_133766, intron 1 of 22)	23932.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	3.90225963181601	3.75756692008688	3.89074179913875	3.77117875057303	3.84151050934311	4.18616975816199	0.267994871671894	0.611179922503268	0.885964478139286
Merged-chr4-144892373-4	chr4	144891886	144892886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-441.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	7.30138084520221	7.80136031132957	7.52150241830183	7.35658900023452	7.58140585135393	7.43547846055393	-0.141720157767222	0.578742351341772	0.872437129840066
Merged-chr3-101600051-1	chr3	101599551	101600551	+	860.0	f0_c57.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4656.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	6.92882549469271	6.57502374551284	6.77994142546849	6.76154146059655	6.62412665570154	7.09373209050869	0.0977415318928948	0.729016059265106	0.930508277706248
Merged-chr7-74497401-4	chr7	74496884	74497884	+	979.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038643, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	57396.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.62604730509502	3.61122670200119	3.72820511863046	3.49388996024686	3.57476768027258	3.98406560933994	0.133188210619914	0.815838343081333	0.956495686206055
Merged-chr17-24720491-1	chr17	24719991	24720991	+	1000.0	f1_balb.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	-298.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	8.05071164517052	8.46670905487341	7.80915224646103	7.67717806951531	8.15568282014379	7.81364738679216	-0.341564401006187	0.217711173241844	0.611656200779633
Merged-chr10-53597391-2	chr10	53596891	53597891	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025541, intron 1 of 3)	CpG	430.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	7.40563869406276	7.2783011329655	7.06238300940901	7.44108110861823	7.13604307022685	7.15889535249451	-0.0144342898972718	0.954561075299205	0.989606357454991
Merged-chr7-122217719-1	chr7	122217219	122218219	+	678.5	f0_balb.idr	Intergenic	Intergenic	-1777.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	4.55214638043801	4.73534960131569	4.79410927462592	4.62348560704034	4.66981994081808	4.6686768214204	-0.0918211886884977	0.821630562638574	0.958023303204974
Merged-chr2-160452166-4	chr2	160451681	160452681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85116.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.38171801733612	4.13538774524458	4.7055767826821	4.09150326418862	4.03578975287682	3.91821401190018	-1.09652814726938	0.030255260114045	0.210087597727569
Merged-chr3-27211859-2	chr3	27211359	27212359	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	MLTR14|LTR|ERV1	28855.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.78485365710381	3.8056623409345	3.91173466272914	3.58061126940802	3.81268268411823	3.83459607481186	-0.271575029090725	0.610108653188693	0.885428451824695
Merged-chr1-151264978-3	chr1	151264481	151265481	+	969.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79505.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	3.34931059731866	2.87021667591791	3.31391685810594	2.90360784153253	2.85072557460996	3.10866988579323	-1.07882077121735	0.134039410096797	0.489430895003259
Merged-chr1-178342249-4	chr1	178341756	178342756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4441.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	6.53156641409702	6.58444253505645	6.25321505586351	6.57332934965486	7.02852236057183	6.35641445741921	0.361300376150604	0.246891083115992	0.643991010781048
Merged-chr9-118670603-2	chr9	118670103	118671103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 9 of 27)	intron (NM_133721, intron 9 of 27)	-41089.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.49980927420672	7.41563033577679	7.37689509372334	7.29273929323254	7.77133708543903	7.23711998110995	0.0526705607175702	0.84106377691996	0.962832831784718
Merged-chr11-107322931-4	chr11	107322438	107323438	+	953.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-133557.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	7.36329132450099	7.10742223611697	6.77320177152577	7.0953144819617	7.26567252625504	6.76602851283749	-0.0669965907568803	0.817960191298162	0.956835450074313
Merged-chr5-67260678-4	chr5	67260174	67261174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028975, exon 1 of 8)	5' UTR (NM_028975, exon 1 of 8)	109.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	8.23816384181546	8.96082391179011	8.1991118392314	8.36647932474247	8.80606732788211	8.28128696030485	-0.0185398369718091	0.950402345398699	0.988433104826972
Merged-chr11-100841016-4	chr11	100840485	100841485	+	687.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	9600.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	3.76602408561514	3.72056772634561	3.69152203622981	3.92039642032891	3.92941899567797	3.53435681065792	0.287903045969598	0.602581956450338	0.882397657327329
Merged-chr12-83921336-1	chr12	83920836	83921836	+	666.0	f0_balb.idr	intron (NR_073564, intron 1 of 12)	CpG	598.0	NR_073563	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	5.85081361674935	5.77856079975904	5.94066710058332	6.15188602638589	5.79583480358939	5.8823103028409	0.171929458586613	0.578796419525251	0.872437129840066
Merged-chr18-75259273-4	chr18	75258778	75259778	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	38039.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.19918669869323	4.31780345071197	4.21057249030931	4.24138454484601	3.80997036325496	4.09099501570231	-0.543264151778471	0.273491115404033	0.67077311591519
Merged-chr12-100471477-3	chr12	100470927	100471927	+	852.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 3 of 19)	L1MEc|LINE|L1	49395.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.37828015835226	4.58253867045323	4.74537735011714	3.80644310265917	4.02729652550443	4.06971808674453	-1.64789211738679	0.000843324852499085	0.0157616242717017
Merged-chr9-66939041-4	chr9	66938541	66939541	+	933.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7045.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	2.7677685310145	2.56761175158462	2.82084634852072	2.76793057386477	2.4938019296446	2.58154147284519	-0.56142639964803	0.47115771017743	1
Merged-chr5-90771545-4	chr5	90771052	90772052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-883.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	6.55388070961636	6.48675781304387	6.3186053021449	6.0580885422753	6.54056554936173	6.25661782352676	-0.24661495241785	0.406279892524264	0.780624793265574
Merged-chr18-65502978-4	chr18	65502466	65503466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	RLTR19-int|LTR|ERVK	71969.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	7.51654037474571	7.09606204839118	7.18571835403003	6.51230804951511	6.70030989570043	6.66825278229529	-0.998846931601343	0.000176961188190024	0.00453203648720084
Merged-chr8-105500081-4	chr8	105499565	105500565	+	933.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3163.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	6.16384576640282	6.53032062360177	5.75185986685464	6.29595073544646	6.34858559028752	6.21151851316066	0.142006233264332	0.668085743632134	0.908976375106763
Merged-chr5-76183363-2	chr5	76182863	76183863	+	925.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	-517.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	5.41775227760023	5.4624477578309	5.25014432496829	5.51986171838232	5.41542983978509	4.98503940131075	-0.0913363548110281	0.80407290005178	0.953557286986578
Merged-chr12-12269330-4	chr12	12268827	12269827	+	880.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	7188.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.52129405089823	6.71461138267003	6.42868612668022	6.67594552828075	6.67083236985003	6.50711999193809	0.0914701951958806	0.732061160865594	0.931655063903171
Merged-chr11-113752476-4	chr11	113751981	113752981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163346)	promoter-TSS (NM_001163346)	-666.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	7.83979305840569	8.26023270473339	7.90869314719513	8.0062051747508	8.3912071176651	8.2083514504947	0.273148832679975	0.267689779873728	0.66495301679951
Merged-chr4-137612702-1	chr4	137612202	137613202	+	569.0	f1_c57bl6.idr	intron (NM_001355588, intron 8 of 26)	intron (NM_001355588, intron 8 of 26)	18530.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	3.01122044490567	3.05345940774454	2.86848571788583	3.07344053644225	3.15766554687111	3.4576599845386	1.09082916133373	0.113335194415143	0.449708862989758
Merged-chr4-126440422-2	chr4	126439922	126440922	+	549.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001317173, exon 17 of 19)	exon (NM_001317173, exon 17 of 19)	-10880.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	4.34104305798697	4.41358641036097	4.41700133651492	4.43456842213013	4.46293864600931	4.6455637308273	0.308145461926253	0.475183355805563	0.821758256966855
Merged-chr13-58158745-4	chr13	58158253	58159253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198004, intron 1 of 4)	B3|SINE|B2	1104.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	5.85825027698367	5.58604996385778	5.60684002150919	6.16585052830042	5.8465633421448	5.69849114098473	0.410589042832226	0.214051385111791	0.607279519630221
Merged-chr10-127620357-6	chr10	127619896	127620896	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	752.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.02823999966312	7.24295708343235	7.76647543500423	7.40827502442509	7.16768240843303	7.26893152826446	-0.13773240847285	0.632412903702983	0.895534618336993
Merged-chr2-145822143-4	chr2	145821648	145822648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	36032.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	8.37782560237179	8.33597995343678	7.72407467896617	8.02916557420317	8.52714259285739	7.54566042659829	-0.10874058099983	0.737642671535995	0.933843097300415
Merged-chr1-152292521-3	chr1	152292008	152293008	+	596.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94174.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	3.3735911095611	3.42288895001832	2.98507761911196	3.13696955319636	3.16742376341746	3.36138882894157	-0.239275642972292	0.722699081268242	0.928916602109613
Merged-chr11-119042501-2	chr11	119041960	119042960	+	594.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-2901	-1547.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	2.86530163085028	2.63645239170825	2.83523963073438	2.83773890903062	2.6206014946983	2.72272470647483	-0.279218911625855	0.707312653396156	0.923331470541526
Merged-chr5-3198578-4	chr5	3198069	3199069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145324.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.6485514268412	6.76255795695717	6.35450904533292	6.14446426261363	6.10508573622649	6.16519154900161	-0.777780348108889	0.00582824323874723	0.0682941083522997
Merged-chr2-124671684-4	chr2	124671198	124672198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	18117.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.54384065494784	4.43211344478543	4.33888110072551	4.17088774662817	4.02957916214163	4.49043462477665	-0.566915985220732	0.229156282401098	0.624625428681258
Merged-chr19-53365118-2	chr19	53364618	53365618	+	651.93335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008543, intron 3 of 5)	intron (NM_001008543, intron 3 of 5)	24923.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.38627004862365	3.32204285242722	3.41017248530515	3.05455898358267	3.10315847312942	3.26131197248324	-0.983153687692602	0.119294488415253	0.461750746246286
Merged-chr16-8672885-2	chr16	8672385	8673385	+	640.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-732.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	3.07225055538954	3.17392091979744	3.28171313677518	3.03373800024572	3.51393010405188	3.29708830009168	0.518053597710142	0.43480178960752	0.798660466628143
Merged-chr4-140961969-2	chr4	140961469	140962469	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	698.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	7.79916062340166	8.11577454153749	7.88616175706612	8.15197087002449	8.35469753388	8.18249271358355	0.412547874647604	0.0668320013195116	0.337922099480089
Merged-chr10-117216264-4	chr10	117215780	117216780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8227.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	7.56136328296219	7.90786384355119	7.74358176833845	7.58538482617605	8.10975105292933	7.51566478799095	0.0426595270561754	0.875270324326626	0.970953455305683
Merged-chr4-132617427-2	chr4	132616941	132617941	+	599.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-21605.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.22631016422764	5.92787534502561	5.94630258948597	6.01448185008182	5.94973644745106	6.00754142683016	-0.0985686332346317	0.741466744321287	0.934858168974705
Merged-chr13-30630185-4	chr13	30629681	30630681	+	765.799988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15138.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.40165703297652	4.31655169426473	4.56066669908484	4.56364215984209	4.59084793685247	4.46062244190066	0.306643356285088	0.475629185067131	0.822063360316711
Merged-chr10-53504889-2	chr10	53504389	53505389	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	14100.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	3.58506494434991	3.68465362265687	4.04176224599046	3.73218691349526	3.71039214462067	3.92880231161062	0.0437953919678377	0.936960991621744	0.986037792257163
Merged-chr12-99942707-4	chr12	99942208	99943208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 14 of 15)	intron (NM_028354, intron 14 of 15)	-21791.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	6.45694039590767	6.63413036705737	6.08615630143357	5.94885614064507	6.04426729567338	6.1472920348655	-0.633168188340497	0.0373248650780266	0.23848017917626
Merged-chr11-109427276-2	chr11	109426776	109427776	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252193, intron 2 of 7)	intron (NM_001252193, intron 2 of 7)	1056.0	NM_001252193	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	2.73335462728099	2.94502148115729	2.97670259774857	2.97414889397983	2.85697783086414	3.04879156346468	0.34161667548036	0.625819301173482	0.892672753660696
Merged-chr4-33242691-4	chr4	33242203	33243203	+	823.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	6084.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.73198020312604	3.54477784105202	3.6017174962709	3.69039441969901	3.34867890783103	3.50801255554718	-0.388974524966585	0.502941980795751	0.836691193058519
Merged-chr5-114640265-2	chr5	114639765	114640765	+	552.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_022017, exon 3 of 16)	exon (NM_022017, exon 3 of 16)	18156.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	2.47469890523117	2.30844882419197	2.54447760379405	2.21633981001007	2.29559995912991	2.23185935476886	-1.29603857586356	0.137719539207415	1
Merged-chr3-81099443-3	chr3	81098943	81099943	+	676.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	RSINE1|SINE|B4	63027.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.82778231840464	4.76175648166118	4.997337515095	4.66138353704601	4.8602924157807	4.92387120449113	-0.0906746523496507	0.818527588044981	0.956987321171514
Merged-chr14-50062348-5	chr14	50061875	50062875	+	978.2999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	22304.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	3.66431137734888	3.6487344820396	4.03371995116585	5.23409731210031	5.44108889811057	5.1840749993387	4.42487254056422	8.00431373059176e-15	2.14155285175267e-12
Merged-chr9-114789804-3	chr9	114789331	114790331	+	585.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 3 of 3)	intron (NM_027294, intron 3 of 3)	-7838.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.15686509678655	4.32136821768071	4.25961573450979	4.62970453186449	4.62183122805539	4.54857854402575	0.908030014813825	0.0372254181525297	0.23808244378445
Merged-chr14-13361838-4	chr14	13361355	13362355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	77075.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	6.42860175096694	6.70944784630648	6.441723385855	6.06718250348763	6.29475955786028	6.18423831482189	-0.571860898919144	0.0440279772578612	0.263958493527784
Merged-chr4-99200889-2	chr4	99200383	99201383	+	920.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175029, intron 1 of 10)	MTD|LTR|ERVL-MaLR	6736.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.56884124206313	5.69896616317254	5.88443797083645	6.92851494635317	7.14756388430522	6.43576090388849	1.93181114890631	1.08253945334345e-09	1.18833697669923e-07
Merged-chr15-72929334-1	chr15	72928834	72929834	+	840.0	f0_balb.idr	intron (NM_029640, intron 14 of 21)	intron (NM_029640, intron 14 of 21)	-119010.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.01837595878179	1.98237784078106	2.11112894224334	1.84849999499679	1.78962918535853	1.7766576196693	-2.15314001041865	0.0430788045507344	1
Merged-chr17-23739560-4	chr17	23739074	23740074	+	886.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023824, intron 1 of 2)	intron (NM_023824, intron 1 of 2)	756.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	3.78761625235457	3.83437473063039	4.12137803899061	3.76743438709628	3.51370728247558	3.96664868697366	-0.521583252875117	0.348538367517728	0.736407000264463
Merged-chr13-34252873-2	chr13	34252373	34253373	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	ORR1F|LTR|ERVL-MaLR	89909.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.20413752493343	4.06015838480067	4.2593491094144	4.09017517407366	4.11349265799175	4.19336580116627	-0.119217655404596	0.800092389410425	0.952408432552781
Merged-chr16-33890809-2	chr16	33890309	33891309	+	815.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	ID_B1|SINE|B4	61144.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.22719847542084	5.34731209810912	5.40166886283359	5.26501666238774	5.11526073865684	5.3459657581032	-0.174344043536237	0.617129527894949	0.888717787419226
Merged-chr16-21643352-2	chr16	21642852	21643852	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	51313.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	7.18843464029008	7.25814209695002	7.23477845481865	6.99888333126468	6.99516738905172	6.84157346048193	-0.415551703889612	0.0801823494227775	0.374652567990256
Merged-chr10-20505655-4	chr10	20505167	20506167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	42661.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.86884047076463	6.04772678492456	5.53999389841567	5.23810382115307	5.23164698079883	5.35719817908691	-1.08791846833344	0.00150944193904663	0.0248413063418101
Merged-chr18-39138019-4	chr18	39137523	39138523	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144878.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.73222902926526	6.93513430086102	6.72647108890012	6.68552028625357	7.05824771262039	6.50750867736664	-0.0294046322316395	0.91800489203363	0.981747877135909
Merged-chr3-52031474-3	chr3	52030982	52031982	+	766.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	73524.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	2.91160526715599	3.10057173546031	2.85972671502853	2.89259245572946	2.75545941482975	3.05319542120547	-0.313776860523504	0.659400128638414	0.905402077619558
Merged-chr9-20897359-3	chr9	20896824	20897824	+	919.93335	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016876, intron 5 of 10)	B4A|SINE|B4	1266.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	4.54998540194325	4.14334237701739	4.37811747803837	4.76615569337401	4.73222520115484	4.61899875703581	0.841090839816204	0.0567360924586667	0.307050197157772
Merged-chr19-45790774-4	chr19	45790278	45791278	+	971.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7225.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	5.44979562038451	4.97021924636425	5.26674660628507	5.3502282925573	5.32770124021169	5.16522069364412	0.0897671126855438	0.809000849613152	0.954721853010197
Merged-chr18-80934046-4	chr18	80933550	80934550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	8.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	7.74790745715694	7.72716323340958	7.2298039580584	7.60500815464661	7.29781495048352	7.21194658103723	-0.311179692852088	0.249501702897788	0.646403390563225
Merged-chr9-35278786-2	chr9	35278286	35279286	+	733.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR73|LTR|ERV1	-2319.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	4.85863922362901	5.02500946371969	4.94861128841076	5.03589693532097	4.88194437835262	4.82626626996621	-0.0586674794478676	0.877586339868234	0.971669595710979
Merged-chr12-86896291-2	chr12	86895791	86896791	+	787.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11477.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.10693357538892	5.30569583105724	5.14278931628322	5.42313286633137	5.55851173647755	5.87017527740605	0.835084741879765	0.0188191407141	0.15529484059659
Merged-chr2-43555763-4	chr2	43555249	43556249	+	890.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	424.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	4.74891613290116	4.89972678488753	4.61420053972092	4.76487541500887	4.58132280372686	4.55268008457834	-0.304211769665842	0.461066052421143	0.814864376583716
Merged-chr10-125372195-2	chr10	125371695	125372695	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43232.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.91623257004656	5.17992430876918	5.1833696269441	4.88009868394393	4.66306981013641	4.83343990033728	-0.673600206501043	0.0831628947975481	0.381505377849687
Merged-chr19-34607875-4	chr19	34607395	34608395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-62.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	7.18654124400706	7.28747768289891	7.03997466999587	8.07382344789441	8.30259548683084	7.84616714058927	1.32155449525064	7.75860868874928e-08	5.68791464117577e-06
Merged-chr7-141460098-2	chr7	141459598	141460598	+	577.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-996.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	5.66378199197608	5.92121918874489	5.96268876383376	5.80368129095978	5.8053309017529	5.67662174145345	-0.149452926322371	0.632567922528299	0.895571551612667
Merged-chr7-142372159-4	chr7	142371608	142372608	+	915.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 1 of 2)	CpG	151.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	3.90426164243161	3.48677792336673	3.86233340198767	5.51389356098492	5.32455423461152	4.75354782599157	4.15898169816032	3.45850908357306e-12	6.04570638289806e-10
Merged-chr14-17933762-1	chr14	17933262	17934262	+	734.0	f0_balb.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-47882.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.38905335398842	3.05645082104202	3.25873002458447	2.74586724281333	2.67513989444771	2.85760580914511	-2.56298082730982	0.000982821069272712	0.0177702250178279
Merged-chr15-59823338-3	chr15	59822843	59823843	+	962.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28384.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	3.61304784748689	3.70271763993366	3.60396072752162	3.75790288311735	3.37611070570945	3.39013142806681	-0.426621148371766	0.46855684477834	0.818673566064062
Merged-chr5-100570833-3	chr5	100570355	100571355	+	648.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1350.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	6.6510359007911	6.41126903791298	6.15727637535794	7.50102046649275	7.5559970452307	6.74504745261444	1.37349422675118	2.56913020927441e-05	0.00090496247202395
Merged-chr16-24934380-2	chr16	24933880	24934880	+	589.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125259.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.78753941326595	7.0443026954148	6.5900961270138	6.79427719022584	6.86997333222446	6.75014679714822	-0.0349626381344515	0.896196078152587	0.975793383188212
Merged-chr15-58262263-4	chr15	58261768	58262768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47376.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	8.10110800037194	8.02279257741217	7.49465768622369	7.39032134784804	7.56754664615831	7.18704987487559	-0.736697184332903	0.0066804577606788	0.0755171141872328
Merged-chr5-120527698-4	chr5	120527198	120528198	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	16506.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	5.95124889412471	5.75063898509727	5.55120212807141	5.85171166168872	5.9451111692836	5.39086523743857	-0.00701570462855112	0.983992387382888	0.996464361754829
Merged-chr16-48993734-2	chr16	48993234	48994234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172616)	promoter-TSS (NM_172616)	378.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	8.03415268177764	8.26253745515101	7.67533933016281	7.96607096888842	8.05068684129587	7.8134549643166	-0.100539479388186	0.688585720670246	0.9172299553909
Merged-chr11-100396728-4	chr11	100396263	100397263	+	909.9097289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	1027.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	6.50285468555769	6.5329142411261	6.49691308896486	6.69734409795701	6.83477299609257	6.64301519050062	0.352440551627595	0.170155147407713	0.547454547424832
Merged-chr16-45608673-2	chr16	45608173	45609173	+	838.299988	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1767.0	NM_008099	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	2.33612402271583	2.37316304844085	2.43210760586981	2.48152761262512	2.30000311854666	2.63082899599933	0.577325526194709	0.483123978291853	1
Merged-chr12-16864664-4	chr12	16864155	16865155	+	827.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30323.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.64644561345044	4.44063962428116	4.78402960502411	4.14201377275759	4.19626823477757	5.01015211750865	-0.291926954160579	0.574527740035418	0.870773088875341
Merged-chr5-113735707-4	chr5	113735216	113736216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001010825)	promoter-TSS (NM_001010825)	-66.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	7.60006489106228	7.94242740699702	7.78445801035557	8.06966234441132	7.78068257103826	7.5429110405226	0.0524728069921284	0.836575562873126	0.962001762335242
Merged-chr5-137115428-2	chr5	137114928	137115928	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201373, intron 1 of 2)	intron (NM_201373, intron 1 of 2)	779.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	5.34911125757671	5.5778244899351	5.58967203089682	5.76272739273825	5.88465332801749	5.70643762794069	0.529600431107975	0.0990591584205321	0.419687756705699
Merged-chr19-56556174-4	chr19	56555647	56556647	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	7886.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	4.20485696492906	4.16637848324188	4.10069551046434	4.45407023155672	4.15985204444311	4.48146886941487	0.550114996893704	0.240309883431108	0.637374243928843
Merged-chr19-3943044-2	chr19	3942544	3943544	+	652.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 7 of 10)	intron (NM_019449, intron 7 of 10)	7858.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	3.53857039103678	3.56248387909546	3.80876830719782	3.92116693369766	3.55743779686677	3.87778326097858	0.515869840154678	0.359305166923231	0.745475101759799
Merged-chr4-62507053-2	chr4	62506553	62507553	+	973.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008525, exon 12 of 12)	3' UTR (NM_008525, exon 12 of 12)	-4853.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	2.66577771199274	2.5236865265427	2.7212690517381	2.54201523079032	2.38331908037745	2.85271959031216	-0.197127938556141	0.807740498392519	0.954558605173196
Merged-chr1-191115076-4	chr1	191114585	191115585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16671.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	7.18348280254567	7.08631440296296	7.08548418182091	7.09640340487436	7.46120177864154	7.3114141158434	0.272548829916639	0.267818824231762	0.664975925109882
Merged-chr15-81586743-2	chr15	81586243	81587243	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177821, intron 1 of 30)	CpG-5131	529.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	6.9207722555143	7.50167356359424	7.26381187483847	7.17420864498087	7.45909938446321	7.46070042892016	0.175435277623273	0.521400533329006	0.847043003128525
Merged-chr3-136322788-4	chr3	136322276	136323276	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3290.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	6.26404830407565	6.40899482572358	6.00811092768261	6.12687189541998	6.05304259347719	6.02203101786997	-0.303767169255825	0.301900149870563	0.69860692114216
Merged-chr9-62351410-2	chr9	62350910	62351910	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	10067.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.51154458969436	3.26208958117865	3.51744271808239	3.20231577656118	3.27196936152914	3.58696340528901	-0.289962297812207	0.641739426437898	0.899171520014446
Merged-chr1-191096510-1	chr1	191096010	191097010	+	809.0	f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-1904.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	5.98292574785	6.16090147457954	6.35651033731856	6.73463263012831	6.51355524084171	6.19399559856053	0.566651850841453	0.0637008328056268	0.328860272341698
Merged-chr8-70840715-2	chr8	70840215	70841215	+	726.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-995.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	6.35279348649743	6.56056264983623	6.65980326136981	6.44941802449352	6.66399630363242	6.24239666052607	-0.0796100356173884	0.781778804595803	0.946286689231939
Merged-chr13-112331383-3	chr13	112330848	112331848	+	852.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 5 of 11)	intron (NM_001168403, intron 5 of 11)	42830.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.76689295259739	3.84761211760563	3.68827425056981	3.26504038357371	3.06040347945896	3.65629052207296	-1.61542237409802	0.0136500337179144	0.124634259365766
Merged-chr11-97511530-2	chr11	97511071	97512071	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-11231.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	4.97689388008481	4.74903744151624	5.32975482362169	5.53590497943108	5.52468885142957	5.09919175481716	0.777456204038732	0.0501632028493317	0.285159854855906
Merged-chr12-91709956-2	chr12	91709456	91710456	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	76480.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	3.61449165644453	3.69795079547375	3.79515089572056	3.93794836452522	3.40112087574908	3.71186035409309	-0.00719581875036878	0.990101854934886	0.997703818943275
Merged-chr2-18766606-2	chr2	18766106	18767106	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5744.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	7.29365218922793	7.33763596723353	7.17474510119783	7.3232287557165	7.65912069448736	7.08906023165856	0.173884207817199	0.508948011899482	0.840148914298538
Merged-chr2-60046215-4	chr2	60045714	60046714	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	79526.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.00076262546699	4.82659071583136	4.55742835769503	4.30092212091037	4.31645841995264	4.62485786899237	-0.980316879860843	0.0262054820430775	0.192233602207563
Merged-chr9-92458579-3	chr9	92458064	92459064	+	754.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 1 of 8)	intron (NM_178711, intron 1 of 8)	1186.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	3.20433754079912	3.37739650967775	3.05084086302721	2.91318495112808	2.72820986366844	2.80387044394334	-2.02837690438874	0.00615376481462345	0.0710479343270693
Merged-chr9-35049208-1	chr9	35048708	35049708	+	651.0	f1_c57bl6.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-67520.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.4195480263158	4.65876315781877	4.77808526074978	4.48775394765167	4.53943582105326	4.6561003977558	-0.14877073512464	0.727165050259954	0.930115108449853
Merged-chr8-111659252-4	chr8	111658776	111659776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	15833.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	5.78678698571819	5.66427896847352	5.86800385042501	5.65556543461314	5.51606645790229	5.70692108955715	-0.273394758199027	0.386082339561689	0.766911105785506
Merged-chr10-88731812-2	chr10	88731312	88732312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037166)	promoter-TSS (NM_001037166)	398.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	7.53398143317241	7.56293811297899	7.45742060491724	7.1472734305705	7.12119341469556	7.03083560368993	-0.619952575583975	0.00666179061292991	0.0753758870438771
Merged-chr10-75860254-4	chr10	75859693	75860693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	57.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	7.84554596906769	7.8147524049636	7.21845978438829	7.37968519021346	7.59209475050875	7.19920979977221	-0.377243822733848	0.177732662735347	0.55882263155115
Merged-chr6-13069799-4	chr6	13069319	13070319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	60.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	7.13623905827458	7.2297395423283	6.81086148377578	7.40008496742666	7.29954670875034	6.83762361114125	0.196598248335374	0.486101394886719	0.827646803246881
Merged-chr6-38346018-4	chr6	38345492	38346492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	8611.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	4.99592037873295	5.10760512822664	5.06999810510736	5.50139101691494	5.55391246173599	4.98569721705122	0.661333764906536	0.0812869182771058	0.377202226967148
Merged-chr7-99378500-2	chr7	99378000	99379000	+	671.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3018.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	4.91385539264925	4.81344300023136	5.07481761297362	4.76270512637145	5.08812382446686	5.17039299573347	0.186145185852838	0.634901427672139	0.89636184389676
Merged-chr7-142400223-3	chr7	142399710	142400710	+	647.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12340.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.99514237783289	6.20497080470167	6.188195105816	6.61731097541698	6.68377272936294	6.72983332514856	0.890900920424442	0.000994242457596081	0.0179377550762478
Merged-chr9-57561940-4	chr9	57561441	57562441	+	947.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	997.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	7.30181507131778	7.15977027552482	6.97919256026831	7.14737009803555	7.46993873135761	6.96553113878326	0.0953931876712938	0.722691802640666	0.928916602109613
Merged-chr8-127441329-4	chr8	127440844	127441844	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141692.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	4.85304544546571	4.73067978800081	4.93647541745678	6.33600811977959	6.77571313393721	6.42869114035971	3.20130608608642	6.09747917678042e-20	3.99495312867359e-17
Merged-chr12-100429160-3	chr12	100428645	100429645	+	812.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	91677.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.93647898007073	4.03381608406494	4.53568970931487	3.72123676936385	3.4921815031622	3.94891432990521	-1.42103615571887	0.0132740880067275	0.122383414389339
Merged-chr5-100614275-4	chr5	100613771	100614771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42066.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.53895419331244	5.19282139752501	5.16322648027354	5.98670222047466	5.76400719219094	5.82436990203417	1.0108275659462	0.00323733244358385	0.0446630614615829
Merged-chr1-94582213-4	chr1	94581704	94582704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-215238.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	5.87790211474357	5.99337755385963	5.95770056456668	5.57108293280698	5.76331266534322	5.87863130541947	-0.364161502603065	0.236276200413012	0.632665167625613
Merged-chr11-58224497-4	chr11	58223980	58224980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	9503.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	4.89982514376299	4.99034333355554	5.51572301799122	5.13172159108101	5.1739926271591	5.72243440763161	0.419070201088621	0.317891648404293	0.711697556777644
Merged-chr6-97509611-4	chr6	97509116	97510116	+	943.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-21796.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.71418792559402	6.07155542588115	6.28009900080069	7.0863037773233	7.25817763223755	6.73546909406587	1.63462549460864	1.07908201468949e-07	7.64806271535628e-06
Merged-chr15-99820108-4	chr15	99819617	99820617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023063)	promoter-TSS (NM_023063)	32.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	6.52621487035467	6.61977111730521	6.34440684103053	6.64933547906454	6.89157582577289	6.69332080064431	0.387777976926546	0.148522011904033	0.514111804913504
Merged-chr10-84917262-4	chr10	84916857	84917857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183172)	promoter-TSS (NM_183172)	-256.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	7.64345711285203	7.89805784662185	7.72436029167607	7.80697579661358	7.71217620812666	7.43859830520774	-0.134939395137263	0.570430251918862	0.869196267207969
Merged-chr10-34416110-4	chr10	34415608	34416608	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	RMER6A|LTR|ERVK	2443.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	4.86333699115617	4.82996172376386	5.02270146351811	4.77430577970908	5.1224204279063	5.01860138920737	0.183324230052047	0.637395678428689	0.897347930665099
Merged-chr4-105265248-4	chr4	105264754	105265754	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107907.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.25234344113485	4.18939887120521	4.26952828193168	4.23670565239692	4.1943025323346	4.24728445383132	-0.0307898790436611	0.946046631730014	0.98796006280508
Merged-chr7-101615796-3	chr7	101615324	101616324	+	726.533325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34663.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	5.71200483287654	5.88045937560929	6.16926415574743	6.48355518654621	6.77064063425182	6.25085788801385	1.01614124987264	0.00124245272166576	0.0213551465868352
Merged-chr11-97801180-4	chr11	97800695	97801695	+	947.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	1630.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	5.61406193935574	5.55333364514502	5.75609080191062	5.8172324416388	5.85767455271584	5.38585357305853	0.147001176166852	0.662232917176903	0.90668833008286
Merged-chr16-52039049-2	chr16	52038549	52039549	+	924.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	7500.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	3.41111500020157	3.57400478365963	3.58415589419944	3.31581120355117	3.44782601522237	3.54971941557247	-0.315297941240375	0.589489199862586	0.876882582082885
Merged-chr9-121708980-3	chr9	121708510	121709510	+	836.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1379.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	3.24135712850951	3.05031683425918	3.02988102905579	3.25629025633895	3.06635148457965	3.16309675580998	0.20873131847512	0.749711357675055	0.93745630986217
Merged-chr2-103965714-4	chr2	103965217	103966217	+	961.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-3840.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	4.80212298257276	4.85061202938924	5.1522034329025	4.92420728258058	4.98116027037353	4.62944378648061	-0.15310130368643	0.706478325751127	0.922980821621915
Merged-chr4-86857381-4	chr4	86856863	86857863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009096)	promoter-TSS (NM_009096)	4.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	8.08860583967652	8.40860317001824	7.87962768290411	7.92424726559964	8.08907178325745	7.97548004598534	-0.21437091398464	0.374985197867463	0.758351441305921
Merged-chr4-142041782-2	chr4	142041282	142042282	+	860.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	23884.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	3.64006250217971	3.82097904944013	3.63767822565718	3.70470865361443	3.56864686650496	3.76010430477034	-0.109098124341125	0.841949416001913	0.963002495523594
Merged-chr4-156108859-10	chr4	156108380	156109380	+	962.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1118.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	5.92593372956056	6.20342197362508	6.47037614741666	6.6699063577529	6.74092852191359	6.78425001820405	0.849592488396049	0.00328332004869275	0.0450515352993535
Merged-chr7-127769846-4	chr7	127769350	127770350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	35.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	7.37115820503023	7.57770161506405	7.64350774899928	7.54492998148665	7.73218554448409	7.66417400247003	0.172685427917699	0.453678592827895	0.809939157597879
Merged-chr2-20961486-4	chr2	20960985	20961985	+	834.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	6236.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	3.95455283485305	3.91473000469197	3.69939053465327	3.68954686330352	3.76402370428214	3.60286535378232	-0.568560526251619	0.293654596252371	0.690424156263798
Merged-chr1-127859290-4	chr1	127858768	127859768	+	946.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9505.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	4.12662164090984	3.89449858714859	4.19018440533814	5.21978756035751	5.36373813541345	5.18841577324772	2.98077120345853	3.77924014178589e-11	5.46892197769948e-09
Merged-chr11-118200532-4	chr11	118200030	118201030	+	660.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	L1MB3|LINE|L1	12212.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.06027618172604	4.77866206493039	4.78465700997656	4.77245975454045	4.68744193872307	4.96061075840728	-0.188091785913165	0.639167402126896	0.897939062613691
Merged-chr8-70616860-4	chr8	70616369	70617369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	25.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	8.28532047677073	8.0734745079759	7.89357462408546	8.55155228403688	8.60077501685216	8.16242048641136	0.502643720131735	0.0386615430904584	0.24380065763326
Merged-chr7-134689633-4	chr7	134689165	134690165	+	884.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18978.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	5.3154410971626	4.5988786806338	4.94840756823293	5.1035807730603	5.2019951583825	5.1539271593931	0.338793755686559	0.417092051034355	0.787792972496192
Merged-chr3-101601830-2	chr3	101601330	101602330	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	2877.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	6.00481964153356	6.08173188975699	6.24696274991567	6.46022833331662	6.51152044175228	6.74848275734369	0.767202184013792	0.00634914962725909	0.0727986829523184
Merged-chr19-17314710-4	chr19	17314168	17315168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24837.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.08231776125559	3.95944157030667	4.33229510326897	4.20663016518828	4.01246596646779	4.22825808120029	0.0644715009995726	0.895224606002255	0.975665889379756
Merged-chr2-30124551-4	chr2	30124027	30125027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290503)	promoter-TSS (NM_001290503)	84.0	NM_178694	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	7.42373487753722	7.35311028214518	7.17914419727664	7.3158717361634	7.36241611586188	7.10846387136682	-0.0809085448500117	0.736610227770465	0.933215757921375
Merged-chr2-154891805-2	chr2	154891305	154892305	+	609.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	1101.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	6.26174472460122	6.84951621193299	6.41990095702441	6.46702760617784	6.52857842713434	6.32298284452459	-0.153964135976193	0.61205067552971	0.886473391147181
Merged-chr2-3424014-4	chr2	3423515	3424515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146114)	promoter-TSS (NM_146114)	-116.0	NM_146114	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	8.41944518699318	8.46378013369083	8.04041147932434	8.3666481271688	8.66076614667211	8.01116276563463	0.0767807940152633	0.771700361206827	0.943614978016208
Merged-chr10-120857809-4	chr10	120857312	120858312	+	870.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038023, intron 1 of 2)	intron (NR_038023, intron 1 of 2)	183.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	4.51200720701368	4.77722951386536	4.53413326477769	4.58804025242144	4.35193110911651	4.64170157345872	-0.230817461533535	0.594289250679657	0.87898947489373
Merged-chr11-62557266-3	chr11	62556787	62557787	+	759.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5556.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	3.62771773450878	3.50669704149897	4.06428533469484	3.50677737210495	3.26751825036796	3.82326559174425	-0.68980408846648	0.272826843716339	0.669957480476964
Merged-chr10-36916963-4	chr10	36916462	36917462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57582.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	5.43571708501168	5.56795763467594	5.84801117735227	5.2969678382781	5.09470797853537	5.36393063093408	-0.72180412341626	0.0409220668590575	0.252300188145262
Merged-chr2-118537445-4	chr2	118536942	118537942	+	875.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7145.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.34968569815065	4.14973744833651	4.43558677071023	4.77995649813505	4.67028595181484	4.92178389163429	1.18109826939296	0.00641293626433073	0.0733586344513711
Merged-chr13-112811081-2	chr13	112810614	112811614	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	10337.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	3.50880361962815	3.48380623489953	3.63368951515617	4.09844969296486	4.12562743850365	3.70674494027882	1.52539149196817	0.00603859995958552	0.0700976318969296
Merged-chr8-4322648-4	chr8	4322155	4323155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	intron (NM_010485, intron 1 of 5)	2445.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	3.82017541675919	3.87426414381044	4.13074056504534	4.09473326111785	3.67136927542497	4.19791406464727	0.170702078049332	0.752839033841876	0.938425517908624
Merged-chr5-20938345-2	chr5	20937845	20938845	+	856.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	B1_Mus1|SINE|Alu	-12644.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	4.29863988625246	3.85408942194209	4.10043912108059	4.83837380126141	4.77994070820267	4.66892828501601	1.71898045750848	0.000273615338575496	0.00645322706694724
Merged-chr9-70679521-1	chr9	70679021	70680021	+	970.0	f0_balb.idr	intron (NM_007399, intron 1 of 15)	CpG	539.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	6.84672126170583	6.99366077406668	6.86719373030441	7.01051429045734	6.90372473230142	6.82098884182531	0.0157956709155274	0.948969221125762	0.988169196639905
Merged-chr10-85003728-2	chr10	85003228	85004228	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	86115.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	3.01691036348473	2.88307422302542	2.85402000107633	2.62888271168961	2.66800784395228	2.60693444342198	-1.54873311880398	0.0424521778410179	0.258213170908409
Merged-chr18-12170167-1	chr18	12169667	12170667	+	572.0	f1_balb.idr	intron (NM_029623, intron 2 of 19)	B1_Mus1|SINE|Alu	1437.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	2.63372798190017	2.49626729351021	2.7551941447265	2.67394760678545	2.74951251046125	2.64238957095252	0.352652966723054	0.64249102129546	1
Merged-chr9-21030957-4	chr9	21030484	21031484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023892)	TTS (NM_023892)	-1054.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	6.41866447991047	6.42301543039167	6.5585353309679	6.42430842021999	6.79823829327019	6.45830505790435	0.191273686531579	0.49337939828961	0.831238089043545
Merged-chr19-38931511-4	chr19	38930983	38931983	+	894.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008234, exon 2 of 22)	exon (NM_008234, exon 2 of 22)	493.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	3.54714107341826	3.3812544386006	3.5044799148549	3.52817203183966	3.23561599264848	3.46665880639458	-0.254588363209347	0.670330212482847	0.910029595108128
Merged-chr7-128345118-4	chr7	128344605	128345605	+	825.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46974.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	2.43920876641151	2.36422577855691	2.50751688797839	2.22930536452836	2.07050495831178	2.19108807698261	-2.0651492106845	0.0268258173970155	1
Merged-chr8-83740299-4	chr8	83739798	83740798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1013.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.02226135061917	7.94062867198017	7.36165930692955	8.08207788974801	8.54886890874072	8.00817328328158	0.603094119133602	0.036102838142112	0.233658037838344
Merged-chr18-67205367-4	chr18	67204880	67205880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024190)	promoter-TSS (NM_024190)	21.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	7.23142621098256	7.59322059766697	7.17640992127326	7.32237119399976	7.38302597050905	6.78572330153488	-0.22479919906349	0.434504895301364	0.798440839184216
Merged-chr17-65724440-4	chr17	65723951	65724951	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	48301.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.71545154065028	4.6881746521927	4.98659513448299	4.58688668484426	4.48715330450255	5.11260359191556	-0.117796794119643	0.790866273572377	0.949642127848798
Merged-chr6-39782959-2	chr6	39782459	39783459	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27977.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	4.68186332691992	4.75598097571105	4.77891507837574	4.67784483781336	4.79850832163906	4.91675545995044	0.136913359255627	0.72926271782656	0.930601789377265
Merged-chr15-76948461-4	chr15	76948036	76949036	+	987.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_054099, exon 1 of 4)	5' UTR (NM_054099, exon 1 of 4)	275.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	6.17629746402643	6.51443250759728	6.57270099344458	6.65217377794764	6.69453319250541	6.68049128686407	0.399108480217797	0.146637811077764	0.510883849774258
Merged-chr14-33203958-4	chr14	33203446	33204446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-12877.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.47785450504841	5.32633184700701	4.83691226859134	4.37382366726909	4.51873932931647	4.65568139631641	-1.65092687190171	0.000114426202483732	0.00317584238034234
Merged-chr2-160250486-4	chr2	160249992	160250992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77002.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.98090976647126	5.83576769534633	6.17847141419969	6.34893338453259	6.31204196566326	5.89552255700856	0.366280895804815	0.240562789811872	0.637600439407184
Merged-chr5-99344965-2	chr5	99344465	99345465	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	Lx|LINE|L1	-92038.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.01026698558085	6.72527212621188	7.18752433029336	6.67642317915647	6.92359876633548	6.8306506603709	-0.252354793715577	0.351478883983392	0.739315814209263
Merged-chr15-6591623-1	chr15	6591123	6592123	+	693.0	f0_balb.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	11776.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	4.53597144817511	4.4265776587666	4.38194137930399	4.87993949850045	4.55053986726775	4.89042622128071	0.771054153968137	0.0726045665541416	0.354018766695052
Merged-chr2-5795235-1	chr2	5794735	5795735	+	548.0	f1_balb.idr	intron (NM_133837, intron 12 of 12)	intron (NM_133837, intron 12 of 12)	-49799.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	3.78550939401641	3.7722591781301	3.68609503828807	3.41245770839769	3.37645857833762	3.6522605298047	-0.978658020497483	0.0853212699795088	0.386568778687067
Merged-chr17-5843590-7	chr17	5843108	5844108	+	912.357117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	2228.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	6.78265429836064	7.02417571507365	6.6415980335122	6.78218063988062	6.65012157834405	6.44624608826786	-0.304397166702085	0.267906100498788	0.665075242857499
Merged-chr13-92968630-3	chr13	92968126	92969126	+	873.355591	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104678.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.28827504504713	3.23968176584292	3.46548968380292	3.70325245371332	3.68398710997283	3.84330450862673	1.53577099294242	0.008655537224065	0.0911687918197924
Merged-chr4-43285678-2	chr4	43285224	43286224	+	796.083374	f0_balb.idr|f1_balb.idr	intron (NM_177195, intron 2 of 28)	Lx2B|LINE|L1	18565.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	3.49222292595479	3.39705369518946	3.39005766751544	2.97666791769271	2.80722749472224	3.29685063924255	-1.75818660283896	0.0136029746828466	0.124368346051016
Merged-chr4-9669812-2	chr4	9669317	9670317	+	672.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-473.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.34990156142004	6.51373134811389	6.41401327351186	7.07236857804884	7.07711587595576	6.73843856106352	0.865754240915016	0.00111766684029056	0.0196241448505797
Merged-chr7-44304073-1	chr7	44303573	44304573	+	582.0	f0_c57.idr	3' UTR (NM_009131, exon 4 of 4)	3' UTR (NM_009131, exon 4 of 4)	2886.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	4.98949075971541	5.49236240226868	5.45459782275774	5.70452716391549	5.98231178915166	5.68634480364857	0.893328983920354	0.0129100963255986	0.120374640862887
Merged-chr12-102382998-2	chr12	102382498	102383498	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	B1_Mur1|SINE|Alu	56815.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.78383444188374	5.87420197967347	6.14266946878952	5.79056216543315	5.96555989772704	5.99010578836417	-0.0248170294366388	0.936016922413425	0.986014061025137
Merged-chr14-46821514-4	chr14	46821010	46822010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022023, intron 1 of 6)	intron (NM_022023, intron 1 of 6)	732.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	8.11665584943114	8.30952576079695	8.15574163370421	8.28543155530467	8.43001552940697	7.77202270774269	0.00546952586817927	0.982932753714027	0.996186021741961
Merged-chr2-153092864-4	chr2	153092362	153093362	+	921.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15606.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	5.23995033181695	4.90239800132606	5.55057991847957	5.68349379019656	5.62690024956487	5.44344033829898	0.676917543564599	0.0697956939902086	0.345852793326422
Merged-chr10-70150907-4	chr10	70150392	70151392	+	941.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 2 of 8)	intron (NM_001111121, intron 2 of 8)	53771.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	4.55540113836232	4.7912454850699	4.47555461344765	4.50604917785581	4.36890915029189	4.1626264677094	-0.653162668156763	0.148695539358773	0.514500897687118
Merged-chr7-126696907-2	chr7	126696407	126697407	+	708.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175103)	TTS (NM_175103)	907.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	3.4217389560924	3.74666600771583	3.89239087070914	3.5094491864007	3.40953777073088	3.82122784905472	-0.386344989732677	0.518774724874425	0.845451305547744
Merged-chr4-128735176-2	chr4	128734676	128735676	+	633.266663	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	7605.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.26768453483922	4.02332226914485	4.13005181359915	4.05124316518059	3.98771527956075	4.1045712321117	-0.289345564027196	0.548983396673967	0.860131595139289
Merged-chr1-79848872-4	chr1	79848365	79849365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009255, intron 1 of 8)	intron (NM_009255, intron 1 of 8)	9800.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	4.97681090861319	4.9100176735378	4.43325531221917	4.76175437811508	4.74301558495811	4.30305399926694	-0.405794939398904	0.382237928047562	0.763851614318208
Merged-chr9-120129182-2	chr9	120128682	120129682	+	815.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011029, exon 3 of 7)	exon (NM_011029, exon 3 of 7)	-1252.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	3.90487486309797	3.97186437829671	4.11305354956492	3.64510873660804	3.60897384644291	3.69819151246988	-1.13133967553845	0.0328317132248816	0.220792143701281
Merged-chr1-37890504-4	chr1	37890022	37891022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026913)	promoter-TSS (NM_026913)	45.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	6.36246771552098	6.58918167005792	6.32175538127071	6.5515610087262	6.69330883673017	6.2998620608403	0.161880080602331	0.569227930202547	0.8688875602138
Merged-chr9-99379723-4	chr9	99379227	99380227	+	821.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21197.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.99353470344338	4.15605028477547	3.7872749637494	3.84579499924184	3.65454288016598	3.90998368776388	-0.608245092149298	0.25209601059743	0.649632907970228
Merged-chr17-34030309-2	chr17	34029833	34030833	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 4 of 7)	intron (NM_001077709, intron 4 of 7)	1357.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	4.4835645763209	4.19799330579378	4.69709945119399	4.14584520373203	4.2114647665357	4.37429633921687	-0.58692929342452	0.2144654633062	0.607538973573768
Merged-chr4-140983535-4	chr4	140983019	140984019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3354.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	8.05753711933413	7.90285452237685	7.94476153900311	8.05317338743886	8.31760501203423	8.13120126523487	0.290106026329404	0.183044003046631	0.566085379224821
Merged-chr12-40557000-2	chr12	40556500	40557500	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	L1_Mus3|LINE|L1	110947.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.76342646969044	5.62050166835653	5.82023079136718	5.64565979857549	5.92718156027705	5.99714814674	0.235841988452912	0.456119378359966	0.811360279461309
Merged-chr13-20182408-4	chr13	20181911	20182911	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91904.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.84806699213653	4.37544409443591	4.63662757455159	4.47017915952467	4.76867691786855	4.88907410083248	0.19393061535028	0.662479130463861	0.906804932599005
Merged-chr5-110810755-2	chr5	110810255	110811255	+	942.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-674.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	4.75601297300671	4.70438757005128	4.77661914419609	4.489735096219	4.41039067346791	4.72991367346797	-0.494422575016871	0.23470192944796	0.630784177826417
Merged-chr1-43465180-4	chr1	43464696	43465696	+	792.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	19445.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.19839354068231	5.14273552189403	4.95983540508663	5.10311280282595	5.35464957186054	5.06284976861835	0.16329033886337	0.659247711737913	0.905282710592665
Merged-chr19-28991081-2	chr19	28990581	28991581	+	988.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302380, intron 1 of 6)	intron (NM_001302380, intron 1 of 6)	729.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	6.19455579603702	6.24937387142678	6.3232030306349	6.19835018822705	6.0439068445462	5.95356485481992	-0.305116886667593	0.284080196183137	0.681792470839529
Merged-chr17-5206972-4	chr17	5206466	5207466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	211801.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.96736595341825	5.81259319146037	6.05431893105776	5.55846327024642	5.18587311148754	5.30393125205301	-1.09280474517983	0.00110917595202905	0.0195079925209117
Merged-chr1-80720292-1	chr1	80719792	80720792	+	561.0	f0_c57.idr	intron (NM_175291, intron 1 of 55)	Charlie22a|DNA|hAT-Charlie	38261.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	4.67927481243326	4.82247948692945	4.61647796267561	5.08988093404512	4.78207329704336	5.02663180596779	0.563597209572783	0.160116685204619	0.532706483106994
Merged-chr16-91355400-4	chr16	91354929	91355929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17354.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	8.68262148925387	8.68383675906012	8.22155233888818	8.43283459948104	8.94172923594313	8.32939134909666	0.0723986999795251	0.788207539600291	0.948904207939777
Merged-chr7-88206941-2	chr7	88206441	88207441	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71144.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.44193317090257	6.66078753673033	6.30289031975545	6.66963483601316	6.7018830688889	6.95344964849991	0.457004134777398	0.0988850252106663	0.419360626745723
Merged-chr1-157039268-4	chr1	157038791	157039791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69359.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.45149051574165	6.16846941083203	6.38478285267619	6.28952634901276	6.17822784657505	6.09748758622433	-0.240263169499937	0.398819971030224	0.775423220616012
Merged-chr2-154892850-4	chr2	154892265	154893265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026030, exon 1 of 9)	5' UTR (NM_026030, exon 1 of 9)	141.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	7.65900265692541	8.02667137689141	7.49742489950893	7.40682241011966	7.63514180275068	7.5843502104366	-0.301610986827378	0.236749916646692	0.633159356678492
Merged-chr12-4232953-4	chr12	4232454	4233454	+	904.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1011.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	5.53299684998504	6.08063606481717	5.87040991734473	5.84578754483944	6.12065675633682	5.95574960277426	0.2342271577469	0.480948887731379	0.824891904452147
Merged-chr5-88632898-2	chr5	88632398	88633398	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 10 of 13)	B3|SINE|B2	42682.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	4.00261800751621	4.09078889900898	4.20208219771789	4.09202830079058	3.95430324242677	3.71856918953534	-0.472110928984584	0.357730755386219	0.744281766663579
Merged-chr12-55652941-3	chr12	55652440	55653440	+	863.8444210000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	54023.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	4.08823493597367	4.26813509225735	4.60737698332049	4.25925956627595	4.10799135298103	4.27164296736608	-0.317238546441184	0.511627540121385	0.841483749252242
Merged-chr5-64267487-1	chr5	64266987	64267987	+	885.0	f0_balb.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37130.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.45978037005547	4.3326926111686	4.56240124858328	4.62883027639982	4.84165073791117	4.45815657162944	0.527732733560152	0.22451424645141	0.619347592040876
Merged-chr11-11711318-2	chr11	11710818	11711818	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	CT-rich|Low_complexity|Low_complexity	21141.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.57693572788055	3.45885245052417	3.56841328622009	3.39729304725181	3.56933666084317	4.01780537769542	0.500441086524371	0.404438040125508	0.7795881215457
Merged-chr3-54361115-4	chr3	54360621	54361621	+	839.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	14.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	4.35865728016759	4.65140384308409	4.54106808491134	4.89355249044166	5.11043645764334	5.18940410439062	1.23851302449173	0.00255807248130599	0.0373373653783545
Merged-chr2-123887807-3	chr2	123887258	123888258	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202211.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.0627908515171	3.34996453094112	3.34106085255798	3.03664262513592	3.16153005913443	3.06925903592497	-0.695182555647611	0.291900500995789	0.689235268138963
Merged-chr13-111792629-3	chr13	111792132	111793132	+	708.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16361.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.65260205021563	3.58088806200212	3.42991073514163	3.32177256598699	3.29205075139416	3.66067367066296	-0.49961661022258	0.407279384484197	0.781419523604339
Merged-chr7-98321264-4	chr7	98320780	98321780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-72.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	7.23241791085188	7.27153683919325	6.87897420453674	6.50679219973929	6.65231542438878	6.63589887422528	-0.84631606408244	0.00126882020570777	0.0216788483935384
Merged-chr2-6478053-2	chr2	6477553	6478553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125317.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	6.02719926706347	6.02890638814475	5.65607832024564	5.69283982887676	5.36584927859019	5.24210361098251	-0.865612495079352	0.012477900147924	0.117490224681278
Merged-chr12-12301358-4	chr12	12300848	12301848	+	962.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	Lx8|LINE|L1	39209.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.31686377710296	7.18480387475534	7.18092099992972	7.51461692961322	7.42253987537014	7.35496620448462	0.301626817912473	0.190097366711002	0.576220867868763
Merged-chr11-54533001-2	chr11	54532501	54533501	+	750.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	MTEb|LTR|ERVL-MaLR	10156.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	2.96278766258181	2.99232351671079	2.8482261358174	3.04867175722301	2.65560815078606	2.98379231053312	-0.162912745292286	0.824057256507088	0.958461473318254
Merged-chr17-14954432-2	chr17	14953932	14954932	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024250, intron 6 of 11)	intron (NM_024250, intron 6 of 11)	6828.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	4.37575631198842	4.39221289707868	4.65892584201606	4.41173624905245	4.4523287874845	4.79577176834129	0.202602351323347	0.648951335555009	0.902010268756869
Merged-chr5-41738996-4	chr5	41738512	41739512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25208.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	5.55192082254637	5.85043272231175	5.96622474601584	6.18158232648898	6.5859538986357	6.20317424006579	0.948004039678677	0.00295677749358782	0.041657220062048
Merged-chr1-156066772-2	chr1	156066256	156067256	+	922.900024	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25895.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	3.75552199625704	3.44350039329373	3.92514692952221	4.84246924096827	4.7878807065712	4.30534148342573	2.82582653781817	3.86093106624443e-07	2.34325566856358e-05
Merged-chr7-29214557-3	chr7	29214064	29215064	+	706.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164658)	promoter-TSS (NM_001164658)	-531.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	3.00171401544598	2.88571004289706	3.4819064862246	3.14819036430045	2.89943737175675	3.45283082109333	0.156724552998128	0.831134480416727	0.960421040267127
Merged-chr5-142222355-3	chr5	142221845	142222845	+	845.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-179152.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	2.85224720515468	2.68560951642111	3.1603291142722	3.41636619220311	3.36225828284268	3.88627082754724	3.07762594592736	0.000137988604469209	0.00371457644796957
Merged-chr17-47508155-4	chr17	47507666	47508666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	3115.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	6.74435087625618	6.59958549482366	6.74002485252092	6.7182889669452	7.23948432373271	6.81419440572106	0.405852112085665	0.147341260084818	0.512227670074211
Merged-chr16-76416599-4	chr16	76416098	76417098	+	610.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-42771.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	3.52461972390974	3.72801747257597	3.3676079997746	3.67124358538034	3.83448480136446	3.72476165306249	0.649081154266329	0.260984167264413	0.658521360261207
Merged-chr2-113819607-3	chr2	113819105	113820105	+	871.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	9486.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	4.51122450742628	4.71742345895386	4.42529750528203	4.47085545202282	4.45524429140449	4.20900057530882	-0.431440443092308	0.334696211503766	0.725169314831928
Merged-chr5-3152205-4	chr5	3151705	3152705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191688.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.81828695752644	4.00496317552723	3.56154695180716	3.49019622778759	3.40839855055325	3.68835537758785	-0.996641408740498	0.0863989578566888	0.389377917204103
Merged-chr14-62837398-4	chr14	62836918	62837918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175546)	promoter-TSS (NM_175546)	-272.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	6.590004719932	6.16469247064747	6.35136216989746	6.77053157942977	6.64575139153461	6.72456120385759	0.528754506016296	0.0584297950206944	0.312496875182025
Merged-chr1-37491827-4	chr1	37491275	37492275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3170.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	8.02870601413374	7.848465568253	7.50917069709853	7.94150273120267	7.90380967431388	7.71337390905542	0.0550424057150578	0.823448087814149	0.958366850481353
Merged-chr14-51057617-3	chr14	51057117	51058117	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001011875)	promoter-TSS (NM_001011875)	-375.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	3.76704797114232	4.10840652835457	4.14072912683183	3.75349812019211	3.87985350686625	3.88044442496652	-0.530330983764738	0.312568908745948	0.707190484237326
Merged-chr13-64308194-4	chr13	64307708	64308708	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025370, intron 4 of 5)	MTD|LTR|ERVL-MaLR	4502.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	5.65245898612114	5.89741103543684	5.719929561866	5.34923962274117	5.34459310230973	5.28573743277066	-0.822474588372094	0.0123239656671729	0.116356806448896
Merged-chr19-60580243-4	chr19	60579764	60580764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	759.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	7.93179547611231	8.28378940344555	8.00631367458328	8.06926050801043	8.11883077729138	7.89137192511125	-0.0737736171553788	0.748281364196097	0.936917346693066
Merged-chr6-126853236-4	chr6	126852728	126853728	+	988.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009650, exon 1 of 6)	5' UTR (NM_009650, exon 1 of 6)	130.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	3.8795690249968	4.1731943912153	3.94767983901472	4.00204596486719	3.85362142016549	3.96742026574585	-0.216481160341046	0.669570954667018	0.909692012644768
Merged-chr15-82047427-6	chr15	82046904	82047904	+	955.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011482, intron 1 of 2)	CpG	194.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	7.92150094678076	8.38801562737988	8.00866222973202	7.93286532671371	8.1694078953719	7.92671120979286	-0.153074421596572	0.531747750680084	0.851792887243639
Merged-chr14-31397854-3	chr14	31397391	31398391	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	19786.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.87625708023631	5.63389702460973	5.87939119823705	5.60540326661383	5.19343938784172	5.58771535594414	-0.620821793677286	0.0702527875761274	0.347189985560543
Merged-chr18-34851831-2	chr18	34851331	34852331	+	752.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9376.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.12750432159742	3.83811033691705	4.03824959312986	3.98438835969491	4.19527887172995	4.41171024425943	0.562910228780929	0.263067792643218	0.661069850515128
Merged-chr4-116683240-4	chr4	116682742	116683742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	6.86729940538896	6.65019850466078	6.52218320095511	6.41937518525051	6.74053534207753	6.35331249096848	-0.265700988364064	0.353438871388311	0.740735826287885
Merged-chr14-61689560-4	chr14	61689054	61690054	+	937.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7181.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.42778908068119	3.69656663399366	4.08145695588922	3.89076046772736	3.80291405905753	3.85281704825158	-0.770724075268887	0.168090238575019	0.544431785572215
Merged-chr3-14611346-4	chr3	14610847	14611847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347206)	promoter-TSS (NM_001347206)	-91.0	NM_001099674	69126.0	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	7.83126029826035	7.82163156685942	7.39762100799471	7.79662033549343	7.89403314489544	7.37417033355448	0.0141403744515411	0.957837725083145	0.990000537228272
Merged-chr7-80787530-3	chr7	80787014	80788014	+	859.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	LTRIS_Mus|LTR|ERV1	15817.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.98410930816282	5.96735903819873	5.89299428144768	6.10546598825527	6.05101270401312	6.00220171327222	0.178994499502542	0.534745759544092	0.853099778747719
Merged-chr5-67427141-2	chr5	67426641	67427641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164806, exon 1 of 5)	exon (NM_001164806, exon 1 of 5)	658.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	5.07962595106718	4.92934841342695	5.01592118003243	5.35189716220398	4.84647469454678	5.04561796354019	0.182288937972653	0.641226279120875	0.898855375479536
Merged-chr10-111004331-4	chr10	111003828	111004828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359624, intron 1 of 16)	MTE2a|LTR|ERVL-MaLR	5681.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	4.18697026485631	3.94034987292071	3.77812573971601	4.00885226407259	4.30632771866451	3.95908608371972	0.354853068823554	0.500367840285061	0.834978949366358
Merged-chr6-88500229-4	chr6	88499668	88500668	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	18632.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	3.86721252481354	3.74891332505355	3.85007812172416	3.86381415338347	3.68446076392337	3.60081601343267	-0.320568083355334	0.549741955128078	0.86042385916162
Merged-chr1-97659577-4	chr1	97659077	97660077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133825, intron 1 of 2)	intron (NM_133825, intron 1 of 2)	2099.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.46676588046706	6.71826398165901	6.61871773813795	6.45023067959718	6.80562231692823	6.42858249260139	-0.0324092445078346	0.908523992238475	0.979266532095756
Merged-chr11-93995901-5	chr11	93995460	93996460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-131.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	9.37314489571258	9.48710701587826	8.86554895814991	8.94161045116001	9.37502905886414	8.77190183230594	-0.288832341008245	0.285667379145411	0.683152802436807
Merged-chr10-7204133-3	chr10	7203497	7204497	+	671.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	8240.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.18003684475374	3.30933206219365	3.34493893985207	3.68428941732851	3.2394220960872	3.52704575824526	0.826092507267498	0.186097057929128	0.57061089624098
Merged-chr9-123717672-4	chr9	123717202	123718202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033322)	promoter-TSS (NM_033322)	-77.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	5.65260623534546	5.63801528760561	5.35129489615863	5.62348598351661	5.72291669420467	5.56933280372958	0.148839039274768	0.650150527585911	0.902544402889903
Merged-chr10-115384888-4	chr10	115384393	115385393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033261)	promoter-TSS (NM_001033261)	-66.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	8.51360874584739	8.66021780007932	8.27516819311397	8.31617895493217	8.29709841585452	8.49375436048066	-0.17947003242386	0.418364705381288	0.788591657834186
Merged-chr11-113684546-4	chr11	113684036	113685036	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	102.0	NM_001361593	276852.0	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	6.72105012955944	6.69304739455678	6.46652149907003	6.81311254926644	6.84839655615195	6.25916098719939	0.0678145098473246	0.819315415595075	0.957264866871257
Merged-chr10-34235560-4	chr10	34235071	34236071	+	974.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28020.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.5693166197917	5.12569961334833	5.09474233782553	5.0811713083253	5.10310385283679	5.12482206341428	-0.385015906881599	0.308692282230598	0.704643548588986
Merged-chr13-51639026-4	chr13	51638497	51639497	+	993.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-6235.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	4.34531958614479	4.54147898088721	5.19971122102641	4.56214596700741	4.7872659515817	4.89053330775707	0.0289444394496526	0.951991182062494	0.989013170479262
Merged-chr2-39190832-4	chr2	39190319	39191319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178778)	promoter-TSS (NM_178778)	-89.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	4.47865578649506	4.6310861917322	4.62737781619391	4.49211012305786	4.04985406137617	4.16792190052356	-0.854727550272953	0.0663315889409694	0.336318253159477
Merged-chr7-84103938-2	chr7	84103438	84104438	+	975.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-17433.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	2.43131827089253	2.68618434092554	2.73094727973955	2.88065207061105	2.54407124504315	2.92420749554883	0.900264946068938	0.260798567434513	0.65830988954893
Merged-chr1-107399533-4	chr1	107399020	107400020	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23169.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	4.44163801080161	4.50606933863295	4.29615358660613	4.6581743021341	4.56235545502407	4.8534305553657	0.643763026429958	0.135779874075287	0.492522418678081
Merged-chr15-64042728-2	chr15	64042228	64043228	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	B1_Mur4|SINE|Alu	17036.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.50298159484272	3.49782155510039	3.68548468875816	3.72152468057223	3.51602772091714	3.75486629305018	0.361254894329078	0.519813349461881	0.846048097455962
Merged-chr18-9735017-4	chr18	9734500	9735500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	27352.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	5.41148321705586	5.30478779554338	5.02173768056848	4.65761117079709	4.74798759089566	5.18782103958213	-0.830364700153118	0.040109497662862	0.249322507211372
Merged-chr8-46894467-4	chr8	46893923	46894923	+	885.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92464.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	5.25043095117245	5.05845210953911	5.34779748043305	5.08306325305092	5.28489611599316	5.09088638482692	-0.108537353396794	0.765647116180528	0.942216449650956
Merged-chr18-25241822-4	chr18	25241311	25242311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	72791.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	4.62082851081477	4.71240930378711	4.42208727021318	4.56419853960094	4.3130388920911	4.5335172799823	-0.323483010497955	0.457451618800736	0.812284129261024
Merged-chr2-152810366-4	chr2	152809888	152810888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	18101.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	8.01607255750342	8.06998325909304	7.74082583446835	7.78886180667876	7.92945974606041	7.30474970208055	-0.346925215106376	0.192130895411127	0.579131441007207
Merged-chr1-66859673-4	chr1	66859169	66860169	+	760.104187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007381, intron 1 of 10)	RMER16|LTR|ERVK	3640.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	3.08840124318701	3.14712463483365	3.19489303734279	3.12893237134043	2.95211441109848	3.2099605498006	-0.208971679573626	0.748786373894089	0.937087780077821
Merged-chr3-81933017-2	chr3	81932541	81933541	+	977.833374	f0_balb.idr|f0_c57.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	440.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	7.4586540157492	7.8980360858622	7.55435053503228	7.70999159649667	7.97638354153287	7.51983242285712	0.146020184425247	0.576547393084819	0.871593093944544
Merged-chr6-39781130-4	chr6	39780617	39781617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29819.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	8.00054900166971	8.3808226127912	8.10685514181265	8.12561339003473	8.41316472971273	8.00221209295461	0.0321547175835227	0.89469887825574	0.975576532925631
Merged-chr3-16006442-4	chr3	16005952	16006952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081687)	promoter-TSS (NM_001081687)	-120.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	6.45987493838306	6.72584017646011	6.50939410121087	6.60856270518782	6.90121308251623	6.68832525271712	0.269587323420093	0.320110744230095	0.713961851821314
Merged-chr7-80994801-2	chr7	80994301	80995301	+	675.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	1117.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	5.04643939221901	5.41796274731237	5.67983790217468	5.45231084110741	5.50667581141506	5.66605810848451	0.277000198752093	0.4500437491248	0.808117861931044
Merged-chr5-43808185-4	chr5	43807675	43808675	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10718.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	3.69294647581565	3.40341134390844	3.36060276736282	3.59005108394691	3.11434246156839	3.70281877529498	-0.0219877346107356	0.973233434849977	0.994009507000273
Merged-chr7-141539886-4	chr7	141539378	141540378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-21.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	6.52322310563479	6.56679609961273	6.80097846598976	6.64677428678393	6.79443316215534	6.84489950895159	0.21388006683829	0.414358001612278	0.785785276982346
Merged-chr11-53769043-4	chr11	53768608	53769608	+	921.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008390)	promoter-TSS (NM_008390)	-906.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.30707803328369	6.15116011432469	6.14433293922468	6.25498325329878	6.52027379005217	6.42454147765078	0.333884549754239	0.23361009278642	0.629836294896575
Merged-chr5-24036919-1	chr5	24036419	24037419	+	585.0	f0_balb.idr	Intergenic	MER21C|LTR|ERVL	-6229.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.40936911775396	4.5485693217967	4.81616682857017	4.3604682390908	4.23941903658395	4.84617629509852	-0.24102688744381	0.611275084654977	0.886007771523372
Merged-chr6-72550024-4	chr6	72549513	72550513	+	800.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	366.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.04366751259417	6.47539829949674	7.16267814263636	6.060591784956	6.33078973746173	6.45769976307306	-0.56185228168027	0.133613425988328	0.488819290786001
Merged-chr8-70618519-1	chr8	70618019	70619019	+	1000.0	f1_balb.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	1675.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	8.01298574061343	8.02972122041568	7.77627754763145	8.13598761230599	8.2569548798184	8.27738945539561	0.38684712435011	0.0745369815033367	0.359248908533923
Merged-chr12-69363316-1	chr12	69362816	69363816	+	577.0	f1_balb.idr	Intergenic	Intergenic	-6140.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	3.04143585230711	2.90466993181356	2.83827186157498	3.01893280888576	2.92650350871494	3.14963779745699	0.447888620629651	0.515835992243262	0.843966720312586
Merged-chr10-14131780-2	chr10	14131280	14132280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	165401.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.59068369043031	4.48037693277859	4.53633658870358	4.62943528167416	4.41816438735574	4.38610444502851	-0.131222366202977	0.75953638240211	0.940480684153832
Merged-chr4-108833653-4	chr4	108833139	108834139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027453)	promoter-TSS (NM_027453)	1.0	NM_027453	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	8.0349106864538	8.11533626656717	8.14229540260405	8.13813185525616	8.00850101679669	7.84810763584777	-0.126795520606262	0.558274367697876	0.864595191540967
Merged-chr17-84334464-4	chr17	84333957	84334957	+	979.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 27 of 37)	intron (NM_183021, intron 27 of 37)	131751.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.58030548580639	4.39843604425962	4.58349057579181	4.37812928746221	4.40566089705107	4.39948451180571	-0.317473157739606	0.462159164935748	0.815111700283474
Merged-chr2-124605054-2	chr2	124604554	124605554	+	753.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-5242.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.79358127301507	3.2215325284136	2.96509879334106	2.8753392593243	2.61336474942588	2.97852871715098	-0.878154577111602	0.248744291346574	0.645819769301048
Merged-chr1-23184888-4	chr1	23184331	23185331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82578.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	5.49265318447682	5.40244505004128	5.45919426053099	5.51804331297652	5.60255877337954	5.88257609230209	0.407734410463597	0.218583311534189	0.61273880821229
Merged-chr16-91829786-2	chr16	91829286	91830286	+	586.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001110276, exon 16 of 16)	3' UTR (NM_001110276, exon 16 of 16)	100415.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.42101807280837	2.98836189852491	3.4525922159837	3.47963852310624	3.2826127587983	3.62584482494097	0.625828066282933	0.342884695345589	0.731790413709574
Merged-chr19-24961751-4	chr19	24961243	24962243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033744)	promoter-TSS (NR_033744)	-127.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	6.14207516958299	6.45942200309172	5.9953443103533	6.42407596381251	6.50257600559356	6.1513226687864	0.250822272713114	0.411726307825241	0.784025679251701
Merged-chr8-106576010-3	chr8	106575517	106576517	+	783.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11126.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	3.97198387529842	3.57715077015858	4.08547717829357	4.0628832963542	3.71281658290905	4.36156149496246	0.513850042453812	0.370831762913235	0.755074250223784
Merged-chr7-47025638-4	chr7	47025148	47026148	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17234.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	3.59724456952627	3.17811636587379	3.40590299150908	3.61717678019663	3.33978573314067	3.1811447208735	-0.0443818736640857	0.945864079123359	0.98796006280508
Merged-chr7-45014570-2	chr7	45014070	45015070	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008422, intron 1 of 10)	intron (NM_001008422, intron 1 of 10)	1679.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	3.08940085967638	3.1022998729886	3.48209382415334	3.19992242358322	2.9539626634997	3.45111591735238	-0.081625681419375	0.905272748581539	0.978279198518346
Merged-chr6-34907978-4	chr6	34907472	34908472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	2859.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	7.19806632115029	6.9463399509048	6.65381728461003	6.49843714168041	6.61108881194366	6.35775713578563	-0.721077828807843	0.0111907835663297	0.108856993101141
Merged-chr3-96300843-4	chr3	96300307	96301307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6838.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	7.92410295179861	7.96973185625311	7.57150836972682	8.025602846785	8.42252530927382	7.84623093947243	0.41701762705054	0.115724704868631	0.454101449785855
Merged-chr13-23517224-4	chr13	23516723	23517723	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Gly-GGY|tRNA|tRNA	-13821.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	5.87327360473707	6.10107640067492	5.42350339892053	6.22258159181145	6.37512146048834	6.05181363729054	0.657750970467752	0.0539953649052247	0.298092245424226
Merged-chr7-12834986-10	chr7	12834510	12835510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360576, exon 1 of 8)	5' UTR (NM_001360576, exon 1 of 8)	249.0	NM_001360576	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	7.54325204247709	7.71401820876097	7.71568169485811	7.89657734239509	8.01618667328833	7.9809989811527	0.441734251491772	0.0419074854545678	0.256136186991603
Merged-chr12-110889812-4	chr12	110889300	110890300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	536.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	8.77245855277352	8.73133909865795	8.39532681661235	8.50780419062021	8.70557368203088	8.28929210870413	-0.180539717084834	0.443246978170713	0.803721182942431
Merged-chr2-129572299-2	chr2	129571796	129572796	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20543.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.76311297051704	4.7037829045809	4.62407678908116	5.21578623735293	5.37016910538643	4.86138982691169	1.03763759310708	0.00942419846439694	0.0965368343993033
Merged-chr11-82991167-2	chr11	82990667	82991667	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172796, intron 1 of 4)	intron (NM_172796, intron 1 of 4)	663.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	5.57312784632096	5.71224817087838	5.79391651674506	5.77485141540028	5.73869420488481	5.85521770859371	0.173716096541891	0.575108873663738	0.87094931637326
Merged-chr17-24960362-1	chr17	24959862	24960862	+	1000.0	f1_c57bl6.idr	TTS (NM_020608)	TTS (NM_020608)	261.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	5.99995991871403	6.0831049685592	6.04985136859506	5.67559169440792	6.06222676599407	5.79973872995154	-0.309247571140069	0.318070585949415	0.711817713144205
Merged-chr1-58803727-2	chr1	58803227	58804227	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080126, intron 1 of 8)	intron (NM_001080126, intron 1 of 8)	1225.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	6.23479304286769	6.6687543496826	6.81719651861652	6.62165010304628	6.79691520794798	6.63031869388044	0.157778926881224	0.589239782259385	0.876778680297548
Merged-chr16-17111128-4	chr16	17110633	17111633	+	985.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252445, intron 1 of 19)	CpG	119.0	NM_001252445	66053.0	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	6.38207064724585	7.17886488255305	7.18172959033115	6.95555009591664	6.88801066865454	7.03290642132524	-0.0112341197090756	0.971546619152615	0.99377981119604
Merged-chr15-10920417-3	chr15	10919920	10920920	+	903.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31912.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	3.02258026325902	2.9116593582703	3.15999362872161	2.86219148698325	3.15927382479114	3.33821252811324	0.438629519988124	0.527778159325875	0.85011740836245
Merged-chr7-107665319-3	chr7	107664765	107665765	+	838.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357436)	promoter-TSS (NM_001357436)	-213.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.13176380771906	3.07501969138248	3.35473908074267	2.99377262808912	2.81873608541464	2.97661040960778	-1.20449152730548	0.0804334919602112	0.375320210802224
Merged-chr6-134425665-4	chr6	134425151	134426151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	11223.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.81834528470299	5.67522710833686	5.97565164760319	5.44876632886134	5.63750981618	5.6528537869635	-0.439355144569473	0.1724768987464	0.551046605394348
Merged-chr9-66877188-3	chr9	66876669	66877669	+	797.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42463.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	6.4079973984439	6.1852032978482	5.89643241968152	5.57549100488197	5.54831004801275	5.51459713648691	-1.14197874817544	0.000375606135320916	0.00837220340417432
Merged-chr18-20742549-3	chr18	20742049	20743049	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3855.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.59903026896048	6.71422537512155	6.4885807363504	6.65717900257131	6.46681093336169	6.13500795762318	-0.259134351919742	0.36914831146705	0.753878426844475
Merged-chr2-144004943-4	chr2	144004445	144005445	+	981.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6318.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	6.12542675496856	6.03218429730061	5.94372209129014	6.31031777370471	6.45468114232333	6.12299420206456	0.458881222041341	0.113962424496121	0.450859089500984
Merged-chr5-62853435-4	chr5	62852950	62853950	+	816.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	39627.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	6.1808737932089	6.40830743141819	5.89206531627166	5.30302028082724	5.20371328696056	5.7801602929763	-1.35030675474368	0.000139463555434487	0.00374458971300186
Merged-chr11-70764448-4	chr11	70763919	70764919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177565)	promoter-TSS (NM_177565)	-28.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	6.49054960967233	6.37412701173186	6.12417771624677	6.28672886983585	6.39000820722317	5.86234098633056	-0.219527476887599	0.482529552679598	0.825695582331598
Merged-chr16-91847069-2	chr16	91846569	91847569	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	84561.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.57247730873039	7.69712862531505	7.4012674448135	7.68782295386513	8.02815177101151	7.40227648829497	0.25356560281765	0.33967637672611	0.729350397606009
Merged-chr16-87636019-4	chr16	87635529	87636529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62925.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.41556919246823	6.71373328043116	6.45234179819982	6.16554442663927	6.50454762101346	6.02688900405644	-0.447538801932923	0.139925774186089	0.499868788359785
Merged-chr5-3309417-3	chr5	3308930	3309930	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34463.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.22593766901401	3.41436712583263	3.12934133208401	2.88932238926456	2.79493125447143	3.20200014811529	-1.37147181490404	0.0547021016064555	0.300379625847683
Merged-chr13-37954490-4	chr13	37953996	37954996	+	878.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39712.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.51220242425267	3.15466322576858	3.74219716077904	3.22004050853776	3.15549570801097	3.76441225952087	-0.301620533192016	0.660541454196196	0.905981809862142
Merged-chr4-133613775-4	chr4	133613272	133614272	+	950.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 4 of 7)	intron (NM_001017968, intron 4 of 7)	-11604.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	7.22107335567167	7.23843805719985	6.69720521582874	5.61852772749356	5.09735074172115	5.23438049978325	-3.00243298199313	3.28941806854487e-18	1.64883071474386e-15
Merged-chr6-17694446-8	chr6	17693841	17694841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289626, exon 1 of 15)	exon (NM_001289626, exon 1 of 15)	347.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	8.11610051993066	7.83532735311859	7.59540427485745	7.90232650299455	7.3783941879306	7.51080728001014	-0.366214464826961	0.178709150461231	0.560034309715957
Merged-chr6-93757576-4	chr6	93757059	93758059	+	936.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029850, intron 9 of 23)	intron (NM_001029850, intron 9 of 23)	155404.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	5.79582188490647	6.24058202756714	5.71156482477069	5.5090674736964	5.47202170838747	5.00823210816421	-1.07651993828402	0.00427123516298795	0.0546434402585949
Merged-chr15-51083314-1	chr15	51082814	51083814	+	638.0	f1_c57bl6.idr	Intergenic	Intergenic	-193273.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.84719217525788	2.99696641185627	2.75949060403759	2.81357469216778	2.77820167140246	3.13012402444189	0.171968769035253	0.813565635220608	0.955940138311315
Merged-chr14-19950952-4	chr14	19950436	19951436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285909, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	25757.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.95045576676098	6.81082169546819	6.04766229524036	6.34099942950786	6.37913035148647	6.20495468557861	-0.57715169726932	0.0857789692271461	0.387863424636076
Merged-chr7-100232878-2	chr7	100232378	100233378	+	935.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	5271.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	2.96296296148607	3.06450615837464	3.16194239966431	3.0124860048037	3.22130561147954	3.0590194363652	0.194103840500272	0.769797596004764	0.943253986717194
Merged-chr17-84271754-2	chr17	84271254	84272254	+	642.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-83807.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.78347136359241	5.69126996394923	5.43492636302282	5.72005869617139	5.90427760974521	5.61983875800547	0.196239319066575	0.549895697586989	0.86050509437616
Merged-chr10-94505536-4	chr10	94505068	94506068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9289.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	8.14756014014418	8.09031157972824	7.81591680272631	7.81505352119347	8.10239574301506	7.49736050856431	-0.271706039950739	0.296929405754856	0.693511179566253
Merged-chr2-52988063-4	chr2	52987548	52988548	+	937.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	130180.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.42177911492008	5.65117159069246	5.20656763889901	4.9366523697324	4.92107250110761	4.735384161596	-1.18688635100733	0.00183649801049933	0.0289251043834239
Merged-chr17-84143202-2	chr17	84142702	84143702	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44745.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	1.98607750455516	1.9920929109151	2.25189181562341	2.02786176037162	1.85906791082777	1.92944469318029	-1.12315504069665	0.247964357137236	1
Merged-chr5-92331354-1	chr5	92330854	92331854	+	543.0	f1_balb.idr	promoter-TSS (NM_001310664)	promoter-TSS (NM_001310664)	-473.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	3.46241534586212	3.4004962674574	3.44339715465941	3.23711077915158	3.49752952344021	3.56676457668772	0.0189723704694213	0.974642009265733	0.994296985713596
Merged-chr7-45898343-3	chr7	45897849	45898849	+	863.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144801, intron 2 of 7)	intron (NM_144801, intron 2 of 7)	1280.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	4.20100157636222	4.45697513202508	4.43742742116336	4.36504251715234	3.96290742185356	4.33486022815852	-0.384260124693672	0.424585720947876	0.792697196836987
Merged-chr3-81933591-3	chr3	81933083	81934083	+	694.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	982.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	3.88761804082796	4.09573165834823	3.85103324904826	3.74497326962286	4.04063606459909	3.81634100877874	-0.221476911765683	0.674715240760896	0.911853445810291
Merged-chr3-87408370-4	chr3	87407861	87408861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27421.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	4.06228395767371	3.7983976544871	4.1553929662457	4.65771070397565	4.77444822527681	4.17669735161421	1.51503503135064	0.00255737831314697	0.0373373653783545
Merged-chr16-4969627-4	chr16	4969126	4970126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_073370, intron 4 of 8)	intron (NR_073370, intron 4 of 8)	5338.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	3.80859069542407	3.59843475796147	3.68658547141842	3.53831732787649	3.35050010849511	3.70528960582595	-0.603697808378267	0.293884461131266	0.690446346156095
Merged-chr6-137558994-4	chr6	137558491	137559491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	12018.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	5.63163060296937	5.16704195041602	5.20802744434917	4.8204018715064	4.52241395551038	4.53334553937158	-1.5766376337443	0.000137916887674213	0.00371384737527377
Merged-chr18-53850018-1	chr18	53849518	53850518	+	893.0	f0_balb.idr	Intergenic	L1MB4|LINE|L1	-12095.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	2.96832101115785	3.5221995320417	3.38227023061357	3.21368109457877	3.28996358793994	3.34339959918314	-0.124463024862736	0.852990012473729	0.965595746053526
Merged-chr16-30948423-4	chr16	30947892	30948892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	133040.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.89248499040367	5.38350694904095	5.4072945721664	4.92987072883539	5.02948176093209	4.78801176409491	-1.33278780406075	0.000634399882651155	0.0126739844983523
Merged-chr9-72531272-2	chr9	72530772	72531772	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033536)	promoter-TSS (NM_001033536)	586.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	5.16906202432745	4.83534210280064	5.06970161325181	5.11621006826525	5.21310784983301	5.06484307015639	0.226910987072661	0.543851674541937	0.857551302506722
Merged-chr2-31716818-2	chr2	31716318	31717318	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	28281.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.49085778890279	4.40041892303117	4.44481551429317	4.53160087807029	4.24007962588228	4.46941804783274	-0.0847977434127142	0.847602133020021	0.964318271116593
Merged-chr2-22795569-4	chr2	22795076	22796076	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	RLTR13C1|LTR|ERVK	21249.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.57142259477395	6.24934963800793	6.12668702262923	6.56209090953713	6.81992861144244	6.16504331850993	0.355180269554672	0.268311352989601	0.665391603019622
Merged-chr11-80157389-2	chr11	80156889	80157889	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	3227.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.98116859913339	6.09492697693982	6.3203798122782	6.17380755352119	6.3626010982533	6.24402820283053	0.229868329494405	0.427683505438887	0.794559469584267
Merged-chr10-122039774-4	chr10	122039299	122040299	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	L1M5|LINE|L1	7516.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.72731949827161	4.05088974849768	3.9174492619948	3.58713620453551	3.89584688314428	3.98597970136685	-0.23095012365232	0.67199766260314	0.910719060610024
Merged-chr16-70386369-4	chr16	70385896	70386896	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	MLTR14|LTR|ERV1	72447.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.76173146863048	4.56339287475437	4.84558587227066	5.42811383798056	5.4293524606537	5.46804079512665	1.52764190444636	3.6021954251149e-05	0.00119748892102661
Merged-chr10-98878964-3	chr10	98878404	98879404	+	896.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35738.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.66554619181092	7.5120270218006	7.39411287930767	7.25830216858619	7.63632644100832	7.42972322305266	-0.112218422842507	0.647811096813572	0.901538008768873
Merged-chr16-94521223-2	chr16	94520723	94521723	+	752.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007834, intron 1 of 7)	intron (NM_007834, intron 1 of 7)	5406.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	5.34808081858886	5.41025165192479	5.29156953196645	5.48742801995846	5.33289492377975	5.6432265781756	0.249920919430249	0.462424017039181	0.815216103160031
Merged-chr5-113016218-4	chr5	113015716	113016716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177078)	promoter-TSS (NM_177078)	-678.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	6.46744911717957	6.4882080791789	6.60317027969408	6.67477316956782	6.58724395407639	6.67827863413964	0.204953879576841	0.425924249883608	0.793463399937346
Merged-chr10-39771844-3	chr10	39771350	39772350	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	39690.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	5.77317890255374	6.00936997080685	5.60464563210015	6.72695161160562	6.61233388896769	5.92804332869616	1.11365892205555	0.00148952610898857	0.0246060131976814
Merged-chr5-34170931-4	chr5	34170409	34171409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1383.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	6.00172245044491	5.95171490759155	6.64650883724875	6.72968374930187	6.72801394790286	6.65862251767715	0.779967995918059	0.0137345901706373	0.125166603047722
Merged-chr14-103481764-4	chr14	103481259	103482259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31582.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	6.40388791624344	5.99548989635108	5.99800930225141	6.21412770264191	6.39730636750767	6.37640367801957	0.296068585289246	0.325364135115294	0.718124347934101
Merged-chr1-177711561-4	chr1	177711072	177712072	+	937.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-18242.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	3.65949950753578	3.45695413031341	3.76497242959543	3.8957423908901	3.60729099091656	3.93099939406665	0.617644556596864	0.270382728859527	0.667299602638099
Merged-chr15-41832406-5	chr15	41831920	41832920	+	999.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	1462.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.86757752627845	7.13509279056256	7.02656404761582	6.91400020365452	7.30253328073037	7.00387636377321	0.118091138323239	0.65278100265124	0.903019146610213
Merged-chr4-63423590-2	chr4	63423090	63424090	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001008792, intron 7 of 11)	(TG)n|Simple_repeat|Simple_repeat	-20145.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	2.87826422695356	2.74190218886068	2.59257909937059	2.85111544349023	2.63389034032556	2.92059965433081	0.291869023901094	0.701321190846289	0.921233461961292
Merged-chr14-73441353-4	chr14	73440858	73441858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56069.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.29365911214173	6.07976450489835	6.24522761334876	6.03762550406575	6.33619214847752	6.4717527391424	0.138913372606109	0.638094771736807	0.897380718500389
Merged-chr5-145119666-4	chr5	145119171	145120171	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	5415.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	5.18775223172046	5.10975067271141	5.22460169071981	5.24980339317183	5.42189982102867	5.57859092577325	0.492948735297392	0.15826682848124	0.530001615434394
Merged-chr7-90020698-2	chr7	90020198	90021198	+	626.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8461.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.39469025523956	7.27317090145993	7.35845635390501	7.18079894874124	7.52442320419214	7.7276711475991	0.222915634001523	0.382182202082456	0.763819347060188
Merged-chr2-166729210-2	chr2	166728710	166729710	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER58A|DNA|hAT-Charlie	-15378.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.99816510377972	4.51116788597497	4.22015322352524	5.35786508771923	4.89862153851798	4.64392820065458	0.838503656710682	0.0992501585816896	0.42004541385646
Merged-chr2-132602816-4	chr2	132602305	132603305	+	841.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4609.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	6.04928949741133	5.54869538993353	5.89780116551742	5.61093687108874	5.52100191000792	5.93583123673545	-0.283610397423643	0.41233205824037	0.784428320958084
Merged-chr11-106255969-6	chr11	106255475	106256475	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008950)	promoter-TSS (NM_008950)	109.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	7.07195639821436	6.90324785717709	7.02995199624359	7.16142120002239	7.21203485271253	6.71382952840617	0.0869999394329573	0.744855207108146	0.936032341688524
Merged-chr16-38455526-4	chr16	38455037	38456037	+	925.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2848.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	5.40956629485614	5.31240551494898	5.77193670583745	5.55136512218699	5.41299621575479	5.85430706908057	0.205405855399233	0.567072889449538	0.867742628008279
Merged-chr10-61679632-2	chr10	61679132	61680132	+	841.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-653.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	6.880205352847	6.90302651522357	6.80122026706016	6.90788908305562	7.06554164919982	6.53789654476783	0.00773686458887474	0.977318560382383	0.994771164142869
Merged-chr15-73422989-8	chr15	73422501	73423501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 1 of 34)	CpG	190.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	7.89734525736119	7.7863217515906	7.61877971688379	7.99769328151129	7.65241999622637	7.6371434164091	-0.00265932760814216	0.991178452892662	0.99819885759976
Merged-chr14-34297166-4	chr14	34296654	34297654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13363.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	5.42967321810241	6.00649176564682	5.82015175542181	5.68135703014358	5.906014538092	5.92915881990881	0.119891343216544	0.725731254939019	0.929707128236285
Merged-chr2-32960467-4	chr2	32959979	32960979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199302, intron 1 of 24)	MIRb|SINE|MIR	776.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	5.50154675750698	5.07733153363746	5.06720733599264	5.37682302803266	5.30027835205569	4.85860130458426	-0.0612791787444038	0.87849182278815	0.971925535382153
Merged-chr9-4375847-2	chr9	4375347	4376347	+	740.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-705.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	5.7383332618594	5.60691671924618	5.86503105016498	5.696321593853	5.90329405661114	5.9260253382785	0.202224959062386	0.517699145476828	0.844716414341769
Merged-chr2-34776065-4	chr2	34775577	34776577	+	846.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022310, exon 8 of 8)	exon (NM_022310, exon 8 of 8)	3987.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	4.7906859675132	4.47833217227218	4.44711002956202	4.66504949443748	4.63731532219875	4.37693634978991	-0.0343198306652037	0.937858854858716	0.986179368327002
Merged-chr5-110108265-4	chr5	110107771	110108771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145147)	promoter-TSS (NM_145147)	-74.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	7.49040243685668	7.61982359736655	7.55841859913162	7.6813020456024	7.78784970503568	7.5258496363065	0.171680243375379	0.447692436923576	0.806625791250637
Merged-chr14-60636332-4	chr14	60635837	60636837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	1632.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	4.25849996793445	4.26463217569037	4.2141234654132	4.65706854099229	4.62491179095048	4.55216705415032	0.935481844789332	0.0306810081572802	0.21178905979351
Merged-chr6-72345874-4	chr6	72345377	72346377	+	788.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-702.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	6.67203311279974	6.85528296997302	6.78777328252287	7.08217861190275	7.37605072760645	6.83101453578761	0.542087481497722	0.0464508144874997	0.272755998081786
Merged-chr10-127738323-2	chr10	127737823	127738823	+	898.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1215.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	5.07734233735275	5.0753851625917	5.21687816311889	4.89450674343545	5.32324798147755	5.39941784184968	0.211476801042031	0.576783466696803	0.871728248059351
Merged-chr2-27353371-2	chr2	27352871	27353871	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	74237.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	3.72995255958191	3.97017972996076	4.04790298260875	3.74452240860958	3.77297421892499	4.20161315387928	-0.0164366666608144	0.975818122105041	0.994547767716175
Merged-chr3-107332597-2	chr3	107332097	107333097	+	677.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	692.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	7.59922763611655	7.84418253895585	7.49608792432696	7.40702573101132	7.7498149110324	7.32400737143607	-0.209816370765177	0.412765064531574	0.784588360697731
Merged-chr13-94098542-4	chr13	94098058	94099058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40762.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.51874974392882	4.29819876883539	4.18364595809917	4.74159680592466	4.29881169879798	4.25429907792662	0.271849006151391	0.571173091383168	0.86942358019557
Merged-chr4-106301410-4	chr4	106300916	106301916	+	795.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14797.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	4.56874075983156	4.7205057197454	4.76321168849532	4.3783436705564	4.23775910746835	4.71842960259872	-0.585352331864512	0.187376012851278	0.572279521264466
Merged-chr10-60389705-4	chr10	60389175	60390175	+	893.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-10051.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	4.24310003971137	4.10177319379669	3.84499460774154	3.96854557677375	3.85363883297723	3.80754378494974	-0.608001199251552	0.239666671123374	0.63661666643112
Merged-chr2-128752256-2	chr2	128751756	128752756	+	836.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	53341.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.18673881013792	5.24233834997997	5.49599443813805	5.59584163705312	5.60993184647583	5.63986349005005	0.599299068676776	0.0730204447751229	0.355092419106101
Merged-chr1-170589822-4	chr1	170589334	170590334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109985)	promoter-TSS (NM_001109985)	15.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	6.2069156545501	5.70381167103997	5.84343832222501	5.78211308980986	5.41840230259085	5.80571106962919	-0.482707838228291	0.16241575401976	0.535842287006085
Merged-chr16-75866378-2	chr16	75865878	75866878	+	958.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 7 of 7)	Lx4A|LINE|L1	42888.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.62365737542349	4.90767090547159	4.63797453964652	4.73668661808634	4.70081515543511	4.78398045717773	0.00267973558137205	0.994742147911463	0.998961028701257
Merged-chr16-57389839-4	chr16	57389331	57390331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	36554.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.83096863863402	6.70124380800932	6.75664680172885	6.44312078597884	6.53488725105331	6.67520596911781	-0.339942431601312	0.187874264880562	0.573220587256787
Merged-chr13-30698096-4	chr13	30697602	30698602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	38043.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	6.4403665432988	6.1960217768503	6.15767206311827	5.98652051534722	6.19951496422643	6.41367895625626	-0.117868180193684	0.693350614808516	0.918930871220844
Merged-chr1-91249332-5	chr1	91248899	91249899	+	802.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-905.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	4.8455487706618	4.44088778999189	4.72279583777931	4.40375240471156	4.26018043817206	4.33254396123776	-0.872757849571857	0.0501447045181056	0.285159854855906
Merged-chr15-98567824-4	chr15	98567320	98568320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-184.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	8.57553810752891	8.77038599173398	8.36528140548496	8.39203614762004	8.73386968343501	8.55010894131319	-0.0232173346214102	0.919688655228685	0.982077636922415
Merged-chr7-29766753-2	chr7	29766253	29767253	+	628.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1799.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	4.32354041214589	3.83616581372455	4.32165480504779	4.23528288949875	4.11216046838042	4.25889212567459	0.0673943528239147	0.893407431327225	0.975237866709772
Merged-chr16-21644733-2	chr16	21644233	21645233	+	645.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285894)	TTS (NM_001285894)	49932.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.57129193014747	5.08818136692339	5.08926651404123	4.65508798876281	4.58869982831297	4.99043212241888	-0.423606569789858	0.330903803020358	0.722226411767471
Merged-chr13-60709008-2	chr13	60708508	60709508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	77356.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.75015740702183	3.67513775417893	3.90516551707673	3.59937077380282	3.15913001442476	3.46283039294705	-1.30680208313495	0.0329461755924374	0.221186491745646
Merged-chr8-27030540-4	chr8	27030031	27031031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153592, intron 6 of 11)	MTD|LTR|ERVL-MaLR	6732.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	6.46824052539767	6.36592449150717	6.03089172050653	6.36784359520309	6.32714492266677	5.94259869219278	-0.124398497636274	0.687814803373165	0.917193226920892
Merged-chr13-23762584-7	chr13	23762070	23763070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013550)	promoter-TSS (NM_013550)	-184.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	7.40351150079717	7.4540407409554	7.23578487127188	7.33425809969395	7.77046931365456	7.51324090167076	0.272110748996071	0.274812684801511	0.672203259945391
Merged-chr4-62286503-4	chr4	62286007	62287007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	78.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	7.11374508559746	7.28942124003481	7.15766132898415	7.75290832755087	7.54261075406473	7.36944936942285	0.557216673634906	0.0218361280094354	0.171215655805607
Merged-chr5-135958471-2	chr5	135957979	135958979	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	15997.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	6.15112173131054	6.17861185960338	6.54175401833227	6.44183771596152	6.52957199893086	6.27048337635137	0.221418594479044	0.446200864786385	0.805727221359847
Merged-chr14-29973373-3	chr14	29972877	29973877	+	709.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019979, exon 4 of 5)	exon (NM_019979, exon 4 of 5)	-4960.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	4.0874323550477	4.24087502908725	4.55738129791333	4.72950017059875	4.13862794471017	4.37661793547768	0.349195057094896	0.483862248490224	0.826584678003739
Merged-chr12-79626376-3	chr12	79625862	79626862	+	842.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	MamRep137|DNA|TcMar-Tigger	298371.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.99431897291374	6.83613293225131	7.20510979772537	6.83447705239302	7.06970501752142	6.89130320393395	-0.109869959747846	0.672189101159453	0.910743828330741
Merged-chr17-34377749-5	chr17	34377315	34378315	+	778.606689	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111094, intron 1 of 9)	intron (NM_001111094, intron 1 of 9)	683.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	3.57647015639516	3.8520053587171	3.39295112308148	4.12312708397797	3.98028688334906	3.65379884664026	0.986402757274118	0.102295717821192	0.426508096831475
Merged-chr2-27425053-2	chr2	27424553	27425553	+	940.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	2555.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.06891780231864	5.45514241565823	5.45595470320094	5.24266568302345	5.43300082380908	5.03096997460595	-0.153990092461777	0.68316774251142	0.91523316791368
Merged-chr11-76033595-3	chr11	76033086	76034086	+	724.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5804.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	2.23429676587385	2.37029974123816	2.22594252922614	2.36604416411034	2.37589814696861	2.49719926307513	0.853030882420671	0.313117638201057	1
Merged-chr10-77976221-2	chr10	77975721	77976721	+	843.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2429.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	3.11870989514277	3.00946958290529	3.21707826042616	2.92047208237654	3.16106921298291	3.05951679149163	-0.262598995043197	0.694859625031252	0.919217788511748
Merged-chr13-102658603-3	chr13	102658104	102659104	+	973.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34943.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	4.01106148831558	4.01487304977463	4.35527431093482	5.93024075124018	6.07029879225567	5.93980398134586	4.50091564661831	2.87252522018233e-21	2.34330469138168e-18
Merged-chr11-100627722-2	chr11	100627222	100628222	+	605.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028024)	TTS (NM_028024)	4767.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	5.55163581612191	5.68293773998512	5.86832920258782	6.27953750509969	6.31105799619591	6.00187185063666	0.901286641547027	0.0033151007972935	0.0453376512259943
Merged-chr19-12436328-4	chr19	12435853	12436853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	8448.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	8.3780951172483	8.49159519786591	8.09147413056278	8.20165053100018	8.52297426479047	7.99659740183766	-0.0968068220444527	0.699535202987818	0.920619136555148
Merged-chr11-55458818-3	chr11	55458339	55459339	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2369.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	5.89230269604089	5.85125030148001	5.74866596132785	5.90939019027661	5.7727008700711	5.64653402832369	-0.0919170841826573	0.765315060280737	0.942137701159565
Merged-chr5-105702593-2	chr5	105702093	105703093	+	713.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	PB1D7|SINE|Alu	1783.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.94824625364512	3.45778376501863	3.47949767542998	3.60875001488118	3.33586742180259	3.49484552188658	-0.609600194465657	0.320526882981816	0.714352298545988
Merged-chr7-35067406-2	chr7	35066906	35067906	+	663.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10840.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.7566496244188	5.4723858296626	5.33909727382136	4.87943373993363	5.02792797685636	5.1774788126476	-1.06005067314623	0.00404776745142262	0.0523805029701359
Merged-chr16-91414117-2	chr16	91413617	91414617	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 3 of 6)	L1MD|LINE|L1	7882.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.61389551797186	6.4142644683233	6.839230569567	6.8748831834951	6.7005869310875	6.66994479376333	0.202715215315367	0.457474806651635	0.812307535537887
Merged-chr2-139919073-4	chr2	139918578	139919578	+	951.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110352, intron 9 of 12)	Lx8|LINE|L1	147727.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	3.48167515168904	3.31257383141285	3.48907464677408	3.58451695002458	3.16619345632931	3.50622381190018	-0.00605859614836356	0.992192202940447	0.998427455457837
Merged-chr12-84764042-3	chr12	84763433	84764433	+	709.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	URR1A|DNA|hAT-Charlie	9179.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	5.47008891720495	5.65279159106259	5.88056347644248	6.05540213000417	6.05129204365361	5.8193368022497	0.570766886987576	0.0735030705271368	0.356246708552073
Merged-chr1-134557081-4	chr1	134556572	134557572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3106.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	4.68029836820701	4.81049980861846	4.55200401545123	4.65646726464075	4.82768950521331	4.85788211954708	0.206999921147169	0.610401543691324	0.88555733136329
Merged-chr6-3183927-3	chr6	3183411	3184411	+	916.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104608.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	3.81166328305074	3.71391515676888	3.63830393097886	3.54149281026743	3.30031172035586	3.708640396019	-0.735373966887902	0.206269045920093	0.596855755513016
Merged-chr6-38823990-4	chr6	38823483	38824483	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	13328.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	5.59421904650557	5.77252678421867	5.61748807860363	5.28286789688455	5.54993499035558	5.41994463546877	-0.450095569654123	0.1756525100509	0.555698392534067
Merged-chr18-60775324-3	chr18	60774819	60775819	+	912.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	723.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	7.30565555810136	7.4790453099065	6.9262224270766	7.27356664492445	7.11156457867966	6.99913267418043	-0.197451833212136	0.462075794384924	0.815107818354545
Merged-chr6-145275547-1	chr6	145275047	145276047	+	557.0	f1_balb.idr	Intergenic	Intergenic	24995.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	6.1467497492291	6.27083863899718	5.98912046779861	5.83702092989653	5.63055941334493	5.85745240507429	-0.661502142517204	0.0291904128808809	0.205245553066786
Merged-chr18-64958314-4	chr18	64957837	64958837	+	976.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65190.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.95784480809696	4.98253450259492	4.58197074834426	6.00309616846521	6.17155880331387	5.57477894580279	2.09726296709033	1.46059712354329e-07	9.96992333517555e-06
Merged-chr2-44829577-2	chr2	44829077	44830077	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172662, intron 2 of 10)	MTEb-int|LTR|ERVL-MaLR	32045.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	3.1884563597501	2.92095494876959	3.00977049977446	2.9639708442917	2.86406528099211	2.83396385300379	-0.745186850604972	0.286385800222639	0.68363782585898
Merged-chr18-46335147-4	chr18	46334652	46335652	+	813.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23224.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	4.33989549315642	4.51683216469169	4.79302518347648	4.37387094512729	4.33748058862917	4.34837943628885	-0.50747358803207	0.25936510965878	0.656942348467668
Merged-chr17-64622481-4	chr17	64621960	64622960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	20811.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.34375086950487	7.44271620560987	7.27377841852047	7.23951438651029	7.66316083044575	7.18542687188207	0.0508792332916452	0.844141974239092	0.963711687630021
Merged-chr14-77878053-5	chr14	77877544	77878544	+	949.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3127.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	5.49792932392074	5.21047311255215	5.52026216990325	6.2935891583789	6.62566108559106	6.5139584518129	1.89126766507466	1.69984846216491e-09	1.79721716441954e-07
Merged-chr8-54529541-4	chr8	54529035	54530035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029701, intron 1 of 4)	CpG	463.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	7.30417521345378	7.39600134473106	7.48406126851312	7.14054067103605	7.28650348825662	6.70197552049154	-0.468464125573005	0.0822481204781312	0.379215471199886
Merged-chr3-96770166-4	chr3	96769653	96770653	+	928.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	CT-rich|Low_complexity|Low_complexity	42542.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	4.63135173298162	4.87908961714295	5.04204207058491	4.80884378786944	4.89540551097244	4.89973992527652	0.0353708407291723	0.929220543819719	0.983987942057929
Merged-chr18-4746289-2	chr18	4745789	4746789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66197.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	2.25505861168808	2.11804630913714	2.3232326795589	2.15694611858696	1.95103457106092	2.13604875165254	-1.14441794557489	0.219605812755676	1
Merged-chr7-80339373-2	chr7	80338750	80339750	+	779.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133952, intron 3 of 19)	intron (NM_133952, intron 3 of 19)	969.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	3.51154364226859	3.4820697019181	3.46285140940636	2.94804803701026	2.92853536100665	3.19965368614596	-2.0836505751053	0.00218080307666809	0.0329913770884609
Merged-chr19-8763519-4	chr19	8763032	8764032	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016813, intron 3 of 20)	intron (NM_016813, intron 3 of 20)	6415.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	5.35912314165928	5.39208378357639	5.59026519652478	5.48859188442769	5.41564721815004	5.98000161354893	0.368328867908646	0.304952880177107	0.701230797737315
Merged-chr8-109565757-4	chr8	109565253	109566253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175646)	promoter-TSS (NM_175646)	108.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	7.80257027429025	8.45841550131037	8.03828313262717	8.05499842795888	8.53958012952977	8.17138963886207	0.200990547723822	0.466806108993157	0.817652165708111
Merged-chr11-113733753-4	chr11	113733258	113734258	+	815.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	17402.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	2.81851448162738	2.89597372786308	3.1207967807709	2.99379466902557	2.69731323589481	2.84127924659726	-0.481017090950869	0.506726933230318	0.838542828803423
Merged-chr4-32239473-4	chr4	32238949	32239949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-177986.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.6607235200366	6.71348522429787	6.82089259558029	6.3027881317614	5.69036151005407	5.9617140152071	-1.19298105611325	0.000115196918842621	0.00319510174101892
Merged-chr9-99491248-3	chr9	99490758	99491758	+	908.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	20837.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	5.35063892597183	5.22555909007497	5.17304938952066	5.62610961308547	5.88827671388058	5.46841968952347	0.820643714043844	0.0176757348384602	0.148816855055354
Merged-chr14-57826206-4	chr14	57825673	57826673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198605)	promoter-TSS (NM_198605)	-10.0	NM_198605	219114.0	Mm.30173	NM_198605	ENSMUSG00000021965	Ska3	F630043A04Rik	spindle and kinetochore associated complex subunit 3	protein-coding	7.48717532058612	7.70011019179425	7.82055656892199	7.80290756951014	7.83667517071432	7.68962877004474	0.157342989050777	0.491969665638946	0.830854971962696
Merged-chr19-28010884-6	chr19	28010365	28011365	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166414, intron 1 of 18)	L1M4b|LINE|L1	301.0	NM_011265	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	5.14192035139214	4.9227921872915	5.07508617456216	5.01511798534203	4.82545390441861	4.85187436225238	-0.324605454766381	0.39254100973553	0.771179872929924
Merged-chr12-9006318-4	chr12	9005810	9006810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172470, intron 14 of 27)	intron (NM_172470, intron 14 of 27)	-23687.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	5.39949712118984	5.66564767984936	5.09706434443603	5.13890987841643	5.07520028426369	5.12686519964335	-0.622169068082589	0.0950416932245736	0.411104001609782
Merged-chr6-89644551-4	chr6	89644050	89645050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153162, intron 1 of 15)	CpG	562.0	NM_001178059	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	6.71636597129073	6.89704192870027	6.86260240522133	6.76363233117483	6.63422473442148	6.6087348595216	-0.243125202386488	0.339032352637348	0.729021190775492
Merged-chr13-91461978-4	chr13	91461482	91462482	+	953.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360776, intron 1 of 15)	CpG	885.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.55014457383181	3.03388709036811	3.46990739876654	3.02334382843164	2.84081275075747	2.98977394989855	-2.00775562424973	0.00619055469330376	0.0713531182277849
Merged-chr4-8666860-4	chr4	8666363	8667363	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23543.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.98946345964509	3.38810256895971	3.68525706952428	3.45472630845569	3.62025944607154	3.53983845347401	-0.589371801993995	0.331509303942029	0.72287602301969
Merged-chr6-28261484-2	chr6	28260984	28261984	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081678, exon 1 of 6)	5' UTR (NM_001081678, exon 1 of 6)	117.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	7.15824943529269	6.28103278591226	6.95371437669501	6.96408449007863	6.31663701845041	6.5544666260845	-0.328089819342641	0.352117611549539	0.739835187306448
Merged-chr5-151195526-4	chr5	151195045	151196045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5352.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	4.36869589396107	4.08514053729816	4.0262905018781	4.48206001067389	4.62991513105683	4.75220157109856	1.147420200795	0.0139907630949488	0.126688289976622
Merged-chr11-51605332-2	chr11	51604832	51605832	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001048061, intron 3 of 7)	intron (NM_001048061, intron 3 of 7)	1549.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	6.08347164788766	6.16548684158267	5.65379658387857	5.8177895362178	6.08935659147942	5.880041825577	-0.102144968351503	0.753485847295057	0.938549578325581
Merged-chr11-60707879-4	chr11	60707375	60708375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008502, intron 11 of 20)	intron (NM_008502, intron 11 of 20)	8185.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	4.3557723357988	4.02321294210306	3.90919849665434	3.95984891148199	3.98542899025716	4.12822142025385	-0.277079167031844	0.585644092927468	0.87509310509708
Merged-chr14-14703153-3	chr14	14702656	14703656	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001360516, exon 1 of 25)	5' UTR (NM_001360516, exon 1 of 25)	131.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	6.35776429730943	6.54545349786588	6.31026723822472	6.46274847311838	5.99396315826187	6.42707934423481	-0.181812062054658	0.545309713166746	0.858059274547204
Merged-chr4-97815116-2	chr4	97814616	97815616	+	846.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37490.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	2.74589474259201	2.73272727842035	2.83877258141272	2.95900467640134	2.67991050892104	2.59058324561101	-0.0851895395650027	0.910215333493368	0.97984424692051
Merged-chr4-132211669-4	chr4	132211167	132212167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145393, intron 1 of 4)	CpG-10406	589.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	7.58733352813729	7.75276712895867	7.70436916729748	7.76319932879938	7.50927081111606	7.53659125462106	-0.108464781230612	0.635041831849308	0.896427381752102
Merged-chr13-59879392-4	chr13	59878905	59879905	+	938.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56258.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	4.77447867320669	4.3444537642021	4.44633193637621	5.36946618590195	5.26702235175195	5.0526975292438	1.54798308208282	0.000223197828046737	0.00546874112959744
Merged-chr12-51844693-1	chr12	51844193	51845193	+	729.0	f0_c57.idr	Intergenic	Intergenic	-15157.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	7.49219734876202	7.93038094892017	7.14171853975754	7.12916703877022	7.33030441535551	6.51292930946315	-0.77207233194578	0.0221074307748414	0.172622407173025
Merged-chr19-5661169-4	chr19	5660667	5661667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164568, intron 1 of 15)	intron (NM_001164568, intron 1 of 15)	2540.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	6.07282864439913	5.97329080237118	6.18381537632026	6.0864391175931	6.2600829579146	6.32231549599196	0.257321384774262	0.369967993304777	0.754416738955496
Merged-chr9-20879670-2	chr9	20879170	20880170	+	969.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145154)	promoter-TSS (NM_145154)	40.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	2.86469445877976	2.97547409757985	3.15205072625022	3.03458820156209	2.9144660842601	3.05319985263224	0.00836167789518458	0.990187812516091	0.997742104481084
Merged-chr4-149954300-4	chr4	149953808	149954808	+	860.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029035, intron 1 of 2)	CpG	698.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	4.42973392836678	4.1549347706129	4.01325009106233	4.41821530595217	4.19631781905123	4.03195121999178	0.0288844615274007	0.953700203437059	0.989446911725587
Merged-chr5-32122560-4	chr5	32122048	32123048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13924.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.10638378979946	4.68489309072335	5.39321691500043	4.91906210429011	4.61888258588643	4.82143851228159	-0.646493198960267	0.134344114972094	0.49007036907488
Merged-chr2-129911603-3	chr2	129911069	129912069	+	922.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-100771.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	4.32228345835746	4.19310462042746	4.03775954687352	3.36042452926253	3.36466823796996	3.69961518646032	-2.51818319732012	2.09954766686782e-05	0.000759561575064077
Merged-chr15-80219859-2	chr15	80219359	80220359	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14221.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	6.73898196308154	6.80566488405273	6.80979673513247	6.76709166481891	6.77087346472571	6.6474717432772	-0.0782307504519614	0.753470699168869	0.938549578325581
Merged-chr9-85749407-4	chr9	85748883	85749883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-49.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	8.23079436313302	8.49196408480679	8.12698474645612	8.3210436481784	8.26297159444287	8.38459018802729	0.0335448687637175	0.879043086834187	0.972074795996392
Merged-chr4-129740607-1	chr4	129740107	129741107	+	552.0	f1_balb.idr	intron (NM_011317, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	1696.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	5.25032023470281	4.6669849973231	5.02408299616688	5.83053037551233	6.02812944524512	5.61213858642247	1.62349576080598	2.32959213683904e-05	0.000831577445397268
Merged-chr17-46520789-4	chr17	46520340	46521340	+	910.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081335, exon 23 of 41)	exon (NM_001081335, exon 23 of 41)	24051.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	5.29178961532201	5.32396895012148	5.37770888747573	5.05916448052891	4.87237730299414	5.19579174041671	-0.604499199374647	0.0937678439576312	0.407917329430992
Merged-chr2-27687355-2	chr2	27686855	27687855	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10154.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.77835675333172	7.17413627746791	6.93030978227001	6.80320968761147	6.94681244160847	7.1430126922649	-0.0120156448674486	0.964235535154449	0.991383573363743
Merged-chr8-69189105-4	chr8	69188602	69189602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-19944.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	6.40804629095086	6.6887067842158	6.20435438305831	6.4368872604502	6.34292360871469	5.95619963591351	-0.306128729487528	0.326799191357611	0.71916934654343
Merged-chr17-33997071-1	chr17	33996571	33997571	+	736.0	f1_c57bl6.idr	exon (NM_001347346, exon 5 of 8)	exon (NM_001347346, exon 5 of 8)	3262.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.0521579596129	3.11461448363421	3.38435374324684	3.53892245632457	3.44634163656612	3.61266774969763	1.3960885205813	0.0262914561370665	0.192524815827953
Merged-chr6-86664817-2	chr6	86664317	86665317	+	637.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	4342.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	2.80426655436682	2.57628100266724	2.77059139517118	2.68869057517564	2.56107040282117	2.65765022963686	-0.46600369597411	0.537949291388048	1
Merged-chr5-92349657-6	chr5	92349183	92350183	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-794.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	7.29281914872622	7.23169711224028	6.99014235963851	7.5602119620517	7.87040258522121	7.44369992847103	0.677300240137356	0.00790017834958455	0.0853157741871812
Merged-chr5-34189202-2	chr5	34188702	34189702	+	746.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1492.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	3.06968457708827	3.15978137092754	3.36637428667816	3.05578471664811	3.06682847990076	3.10511301816179	-0.53667399454547	0.410819001139815	0.783635895772505
Merged-chr7-143107249-10	chr7	143106782	143107782	+	898.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008434)	promoter-TSS (NM_008434)	28.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	4.26873075274393	4.24612325134933	3.91368252450312	4.65553960356089	4.38472189352324	4.28941027848875	0.788267571087346	0.107737872654514	0.43845163570163
Merged-chr17-83277603-7	chr17	83277045	83278045	+	972.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62262.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	8.16502552845629	8.14926131118778	8.09195757344396	8.43429017364759	8.58235917309776	8.2687035608957	0.424341511924509	0.0465260498160234	0.272937080731223
Merged-chr7-83062252-4	chr7	83061747	83062747	+	924.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86223.0	NM_177895	330578.0	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	3.34592013073896	3.56942486237637	4.0537164816183	3.46528507815757	3.55194019961579	3.44731122942765	-0.665685888731429	0.287747216293695	0.685154630160178
Merged-chr18-3337588-8	chr18	3337111	3338111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110852)	promoter-TSS (NM_001110852)	-22.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	8.89616057916756	8.83483281651317	8.2764240396962	8.70177645511397	8.69332870907002	8.44942719699137	-0.113541037723392	0.650987484455155	0.902735752871093
Merged-chr4-5645233-4	chr4	5644731	5645731	+	895.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	1141.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	3.88832577557952	4.43776338179718	3.93603417193575	4.00527933773904	4.03441933874829	3.84667440629237	-0.442074823488764	0.410979803069305	0.783785606749474
Merged-chr11-69035993-4	chr11	69035498	69036498	+	990.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 22 of 22)	intron (NM_001281465, intron 22 of 22)	-9639.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.28317825624449	4.89935168725244	5.11690175214505	4.91066970701746	4.87484307438906	5.18032873400055	-0.265186823408967	0.494956869463574	0.832153667472614
Merged-chr18-20787240-4	chr18	20786730	20787730	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40826.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.24127550823598	4.97146956969078	5.64456594795597	5.11721967298356	4.79939573006047	5.21727732101638	-0.527939933575897	0.198824983650435	0.587343866831168
Merged-chr10-80103324-2	chr10	80102824	80103824	+	562.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	-622.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.90597829970351	4.68397878609566	4.98326469352672	5.11145601476936	5.09707792745712	5.14884847077593	0.565801223525872	0.133484103769229	0.488692066303093
Merged-chr6-47318990-2	chr6	47318490	47319490	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74594.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.19950277871977	3.70988733019358	3.49196369433672	3.35168081021993	3.12175603927084	3.28295863341397	-0.911923133556228	0.159024357543841	0.531013709888191
Merged-chr8-82398721-4	chr8	82398229	82399229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3857.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.94100164917257	6.74112095539957	6.69695965417798	7.49303950962355	7.5277897688646	7.09970846723076	0.896127430636075	0.000620511284623251	0.0124413260170919
Merged-chr17-12770131-3	chr17	12769621	12770621	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	-415.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	4.50961173478488	4.4963304901978	4.42258761819579	4.8269990056844	4.89128343432477	4.44552750198909	0.642221719886174	0.136216818447116	0.493146752362964
Merged-chr12-116434928-3	chr12	116434427	116435427	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133762, intron 17 of 28)	intron (NM_133762, intron 17 of 28)	29525.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	4.71346357521561	4.64575451235906	5.10884425226812	6.41126089379668	6.5985715215825	6.01820113412182	2.98567755045354	4.09813204282738e-16	1.39753020909664e-13
Merged-chr2-140718442-3	chr2	140717944	140718944	+	786.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-46968.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	2.79817418844776	2.58538334870181	2.73619587054332	2.72766502008238	2.69496760170952	3.15367882989849	0.81062160585546	0.289383000576548	0.687028666741993
Merged-chr9-21859750-3	chr9	21859245	21860245	+	887.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7110.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	3.38706238973232	3.30316024228405	3.53911883683464	3.63138664551823	3.51561310035707	3.55638295780179	0.596428853827866	0.302580390704894	0.699228182013852
Merged-chr7-19573345-4	chr7	19572819	19573819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027189)	promoter-TSS (NM_027189)	24.0	NM_027189	69731.0	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem nuclear organelle associated protein 7	protein-coding	6.28717312398855	6.24413150687122	6.46923957584236	6.51643752890461	6.37472720406091	6.38279244985699	0.159264910948319	0.559167388362663	0.864901733108576
Merged-chr5-105139621-4	chr5	105139114	105140114	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256005)	promoter-TSS (NM_001256005)	-28.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	5.92853822779882	5.55169091821596	5.72934199754011	6.542815613132	6.63992184010439	6.68514502401154	1.47304743403302	6.52536207615567e-07	3.70875906852979e-05
Merged-chr9-113793324-4	chr9	113792865	113793865	+	902.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	35.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	7.0392549382775	7.38357271439902	6.97774545281868	7.10533153534378	7.38950077899678	6.65243383363111	-0.0812499669664418	0.787884195135908	0.94877064431094
Merged-chr17-24205127-2	chr17	24204584	24205584	+	861.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010947, exon 6 of 6)	3' UTR (NM_010947, exon 6 of 6)	478.0	NM_001163851	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	5.51234635374674	5.20968634665198	5.41435442587252	5.59654639927316	5.07569116083267	5.35658749485917	-0.0547598583212794	0.882718211486933	0.97323691769342
Merged-chr9-21617293-2	chr9	21616793	21617793	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357764, intron 1 of 34)	MIRb|SINE|MIR	1124.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	5.38115730996582	5.59589325481756	5.52636286155253	5.55430098416536	5.50536614670485	5.56072086429335	0.064854989980903	0.842322893605735	0.963014702903935
Merged-chr2-129092371-4	chr2	129091873	129092873	+	773.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027192, intron 6 of 6)	intron (NM_027192, intron 6 of 6)	-8623.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	3.63016327927005	3.51227112828214	3.43990589279079	3.08188633574859	3.09405019569005	3.40131695267844	-1.38406697707596	0.0301117049606947	0.209475357108058
Merged-chr9-83562466-4	chr9	83561979	83562979	+	959.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	14141.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.98294668221669	5.82680326389977	6.25118294691511	6.45950505842442	6.65691984528438	6.36961228422667	0.81473183581143	0.00582318912268911	0.0682444958479881
Merged-chr4-126051801-4	chr4	126051317	126052317	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025544, intron 5 of 7)	intron (NM_025544, intron 5 of 7)	4889.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	3.52400911943647	3.19791539963681	3.51026414786205	3.54866913809235	3.51771758792825	3.83024536915654	0.78474350113479	0.193478778010396	0.580624739809178
Merged-chr2-180276081-4	chr2	180275574	180276574	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2609.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	3.04593994857783	2.93591235856795	3.02762531464869	2.89033717431165	2.85087119589586	3.15598197682242	-0.176017170663151	0.797855736915173	0.951826291180216
Merged-chr3-105900475-3	chr3	105899963	105900963	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3958.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	5.98422599407651	5.80433886509099	5.20470614649161	5.6332265436608	5.74052678395638	5.53976623017171	-0.13712295715576	0.711500550932132	0.924661173262022
Merged-chr9-22312476-2	chr9	22311976	22312976	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-4838.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	5.16522707198625	5.15860070028395	5.31120199622088	5.19889386297165	5.50132621412203	5.34382605646357	0.306642038507305	0.38352868915924	0.76494131641868
Merged-chr17-31855617-3	chr17	31855116	31856116	+	978.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	188.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	5.08538862971346	4.59047775544268	4.55413206966143	5.07521140977746	4.64050047164428	4.9060700836695	0.238783365091758	0.590918825979688	0.877301111216348
Merged-chr17-45623667-4	chr17	45623169	45624169	+	914.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21567.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	3.28792370156789	3.55337658378598	3.64516852425864	3.88550295948809	3.73779992631089	4.09582864868247	1.38335570175019	0.0170886127450205	0.145461642430651
Merged-chr7-43274580-2	chr7	43274080	43275080	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	38720.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	3.43240497901795	3.76037515831721	3.67318308059727	3.63961483703982	3.43797055953996	3.63929003580962	-0.206007131328313	0.72038636183235	0.928155640080294
Merged-chr11-120453366-2	chr11	120452866	120453866	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126089, intron 1 of 3)	intron (NR_126089, intron 1 of 3)	134.0	NR_126089	18588.0	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	3.46210317370951	3.71786899152038	3.62024489582624	3.67360055639346	3.46038971487727	3.63779741910595	-0.0555315908955212	0.92215662867173	0.982542868764899
Merged-chr1-191638931-4	chr1	191638437	191639437	+	800.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	63301.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	4.68641697650829	4.82809957577606	4.88654580861689	4.52668672728775	4.4436871325913	4.88132638153806	-0.428315642170107	0.310967696149913	0.706228303558147
Merged-chr11-69044809-2	chr11	69044309	69045309	+	682.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	-828.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	4.9080786741876	4.77424627214207	4.91525790018292	5.12939507472766	5.38937951098793	5.25387752740501	0.852148113896637	0.0209897068380172	0.166683673084342
Merged-chr11-109312386-2	chr11	109311886	109312886	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14205.0	NM_011268	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	3.02044820788186	3.33915680028715	3.37741999692712	3.01617864873791	3.06737949457475	3.44729395976008	-0.280419202429948	0.679992632123896	0.914097821153594
Merged-chr8-105564939-4	chr8	105564390	105565390	+	979.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	B2_Mm1t|SINE|B2	1174.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	7.31871129827244	7.34946657159981	7.04627008891275	7.29845583756685	7.48976372162774	7.17010544683485	0.120522702760093	0.629244913797899	0.894140935964882
Merged-chr15-80221160-2	chr15	80220660	80221660	+	601.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12920.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	3.01768465096905	2.94002214202364	3.34779477191014	3.08002822544749	3.14165386701189	3.1455504605441	0.075121594283931	0.910790724702158	0.979969158480567
Merged-chr15-25632366-4	chr15	25631892	25632892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9842.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.66553504532795	6.80988974316104	6.56935316836162	6.91595427266775	6.88119579804573	6.68024660444696	0.224769060420242	0.385740653201401	0.76666449726431
Merged-chr1-174050558-2	chr1	174050058	174051058	+	901.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146716, exon 1 of 1)	exon (NM_146716, exon 1 of 1)	183.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	2.10464958682311	2.07394717860856	2.27059417707831	2.15757864132306	2.06694725997261	1.94353570060634	-0.672022580601337	0.475377693435185	1
Merged-chr15-76069268-3	chr15	76068744	76069744	+	768.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133691)	TTS (NM_133691)	540.0	NM_134089	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	4.31684303088389	3.96455230747861	4.06892101906161	4.37678039643086	4.14045913955952	3.98571227935052	0.148488386368664	0.767025000487032	0.942573703853445
Merged-chr13-13394234-4	chr13	13393731	13394731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	-607.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	5.21154614053251	4.76259001871958	5.2586515669291	4.78986074179707	4.8528498632084	4.36334758258065	-0.868195694100032	0.0528461448188717	0.294305737105192
Merged-chr7-141266108-1	chr7	141265608	141266608	+	1000.0	f0_balb.idr	intron (NM_001252601, intron 1 of 9)	intron (NM_001252601, intron 1 of 9)	316.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	7.926842484306	7.92315027201171	7.55752243715989	7.9159995972159	8.32706565909221	8.1683522938199	0.468300207847347	0.0572084519946304	0.308462834699913
Merged-chr6-87842885-4	chr6	87842393	87843393	+	861.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4134.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	4.59404325746322	4.35876743975426	4.32802869150491	4.37547167147446	4.53331289083375	4.52637237576544	0.108820358350846	0.804591049564143	0.953651704501661
Merged-chr15-73593736-2	chr15	73593236	73594236	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	2790.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.23966723212881	4.07523223314279	4.25298559945069	4.01514916810745	4.1415614201787	4.13955646575234	-0.247909540717047	0.60111058766524	0.881873332130566
Merged-chr17-28408483-2	chr17	28407983	28408983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-43267.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	6.27290936715032	6.18976854184081	6.30740578208216	6.2408915260755	6.70825165208455	6.06532727426091	0.213963991837016	0.495608599849435	0.83254120142987
Merged-chr18-84685680-4	chr18	84685194	84686194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023149)	promoter-TSS (NM_023149)	8.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	7.84635528786665	8.19328309217563	7.88914945640305	7.61550551324314	7.98945660046259	7.6616518735789	-0.310617155660435	0.210381889512825	0.602493762264089
Merged-chr5-138231669-3	chr5	138231169	138232169	+	964.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013773, intron 2 of 5)	intron (NM_001013773, intron 2 of 5)	5765.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	3.44260432512962	3.00798197112091	3.46034714868015	3.04372614953894	2.76484389298268	3.02935329277563	-1.6712330735915	0.0217786766715567	0.170877899904468
Merged-chr16-49049442-4	chr16	49048924	49049924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8062.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	4.44540969517143	4.62538574288832	4.4165134788124	4.37445890898895	4.32188295839026	4.52596272012889	-0.257765644841696	0.55520395333269	0.863191483122339
Merged-chr19-37157159-4	chr19	37156660	37157660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	intron (NM_198300, intron 2 of 10)	-16683.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	6.94389032337776	6.48712229796913	6.67684031757058	7.05452844465975	7.24232329207046	6.71934603881672	0.484935320626647	0.0946920973813912	0.410179605336602
Merged-chr10-77626909-4	chr10	77626392	77627392	+	774.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	4571.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	4.83026849724606	4.54972167443826	4.80595524637936	5.09207809940291	4.96304545295659	5.01688155903993	0.652883366313334	0.0951448234346946	0.411148363215922
Merged-chr5-139283159-2	chr5	139282659	139283659	+	946.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	29662.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	3.51758793834701	3.42733131537791	3.59974552445821	3.51227271945485	3.57506576713896	4.21083581386157	0.948363561350817	0.120293016210156	0.463771641846234
Merged-chr8-128552286-3	chr8	128551771	128552771	+	766.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-133383.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.6315513900565	3.7827427694944	3.43946203553203	3.07846270057229	3.00136129945008	3.21818453381902	-2.29856754064138	0.000594782046457893	0.0120679406295217
Merged-chr12-100728805-3	chr12	100728305	100729305	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	-3685.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	4.67787367694241	4.74339302290096	4.6336690025543	4.40256672502577	4.51616644916982	4.98626453962409	-0.0954488112211768	0.828320072052398	0.959674411441762
Merged-chr15-59951091-4	chr15	59950594	59951594	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	65524.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	5.43883321839192	5.47997736779033	5.48619880169719	5.46991131311955	5.59199910597863	5.52010707759633	0.122135667409818	0.70611698705987	0.922878730238431
Merged-chr10-127659789-2	chr10	127659161	127660161	+	878.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 21 of 22)	exon (NM_009284, exon 21 of 22)	7042.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	2.53756275818088	2.56785916679091	2.60532394694552	2.81755300136682	2.4916872986456	2.74238479744036	0.661551877294154	0.393349852589901	1
Merged-chr14-73388717-4	chr14	73388189	73389189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3400.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.47216530323327	7.54128812773917	7.17865255543882	7.2586622294842	7.60454512089595	7.30889270419416	-0.0106054094561769	0.966771360924655	0.992353001983873
Merged-chr5-24034282-4	chr5	24033787	24034787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3597.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.41965601414735	6.27119751770117	6.42137202512655	6.53135843783871	6.37332581709383	6.32851371135552	0.0758840665990969	0.780069287727162	0.945949149660645
Merged-chr12-37996858-2	chr12	37996347	37997347	+	871.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178681, intron 2 of 24)	intron (NM_178681, intron 2 of 24)	116330.0	NM_178681	217480.0	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	2.36064879670227	2.4240159057723	2.66019931103906	2.26814983557699	2.31734795224662	2.42780690300313	-0.932522049627706	0.26750243305217	1
Merged-chr11-114723341-4	chr11	114722842	114723842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4070.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	4.45141252387038	4.25883232154849	3.86687064965711	4.16746385088272	3.83651596841223	3.8841486158729	-0.720389098893592	0.177423537932262	0.558360731628882
Merged-chr6-83433812-2	chr6	83433312	83434312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	7866.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	3.59442166895808	3.42511289593883	3.58330055423398	3.44796721891174	3.42546288122078	3.80128760030975	0.0929559147397683	0.873896950710288	0.970492962848917
Merged-chr6-34863625-2	chr6	34863125	34864125	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	479.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	8.00530075428229	8.38101211638318	7.80698417522667	8.17999819559353	8.72429412614774	7.97242705129244	0.348523320559751	0.233994815346346	0.630244930563503
Merged-chr7-81850400-3	chr7	81849892	81850892	+	875.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8609.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.52496110052052	7.72807649118873	7.55389952625979	7.23135296183658	7.53292232387191	7.66614762106953	-0.176121853661703	0.472441609314279	0.820550293768681
Merged-chr11-80382726-1	chr11	80382226	80383226	+	645.0	f0_c57.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-553.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	7.7265679784623	7.64805296135099	7.41201536982704	7.65399173917953	7.82806628689013	7.70633486887608	0.180611074807903	0.433822813942522	0.798035255289929
Merged-chr11-114915226-4	chr11	114914720	114915720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19166.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	7.48266285615765	7.15440883921769	7.38390973099224	6.90708413553975	7.18694243661252	6.96913713582526	-0.46924096829562	0.0652449409572804	0.333020552519531
Merged-chr7-6155186-2	chr7	6154692	6155692	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001013012, intron 1 of 2)	CpG	779.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	8.27274723491228	8.30424668252103	8.10874642384604	8.20984617342146	8.51956864899923	8.19201802196607	0.122302191247499	0.584904435900822	0.874754719025748
Merged-chr10-83344003-4	chr10	83343514	83344514	+	816.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6197.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	3.10292253956171	3.07622643744574	2.96950995183592	2.99749796741897	3.05810600900238	3.16023244202649	0.0752358511376765	0.90919763722198	0.979384717565381
Merged-chr15-76818196-4	chr15	76817707	76818707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-37.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	6.6995928058322	6.70740424587124	6.29366850835213	6.35788830724885	6.43408573262927	5.93021552350622	-0.514399427687851	0.0974065472955747	0.416135657941618
Merged-chr9-51028856-4	chr9	51028351	51029351	+	875.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19778.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	4.88856974804502	4.82446893539274	4.41074516026781	4.4823814162326	4.44251548928517	4.43361639325034	-0.68566373228882	0.117296040526194	0.457331522238446
Merged-chr6-122652143-2	chr6	122651643	122652643	+	730.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB5|LINE|L1	25719.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	5.17214787648968	4.87734474140432	5.44012916518351	5.18021039604876	5.33118990206845	5.20360678734508	0.149281621118637	0.69496365116977	0.919230570201314
Merged-chr13-76017560-1	chr13	76017060	76018060	+	798.0	f1_c57bl6.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	1002.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	4.22640771860327	4.26352088455609	4.04934360364599	4.3711314864798	4.29082605374971	4.35549945211233	0.395825906925119	0.388967380681695	0.768839329819819
Merged-chr6-17610262-2	chr6	17609762	17610762	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26748.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	4.45288068315939	4.61898372323659	4.73394676181363	4.35079760985431	4.38765277663001	4.90208154033091	-0.104362731927125	0.819201551595138	0.957209935971094
Merged-chr6-11925866-4	chr6	11925364	11926364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029404)	promoter-TSS (NM_029404)	-17.0	NM_001362122	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	6.74480843683202	6.98174542443957	7.17579880508307	7.07628950495504	6.87339576441107	7.05015685654166	0.0413214484943755	0.8746929613812	0.970754540400126
Merged-chr16-33747665-4	chr16	33747140	33748140	+	919.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 10 of 14)	L1MA6|LINE|L1	-46397.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	5.02402281591534	5.30820611061182	5.35988960990071	5.13469434905215	5.03010839299436	5.07290381479315	-0.321559584299627	0.380131479885452	0.762308048682461
Merged-chr16-85068373-2	chr16	85067839	85068839	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 5 of 15)	Lx5|LINE|L1	96128.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	2.46632580729958	2.32649961959199	2.51037769087736	2.23240168513101	2.15553849624727	2.52254122114039	-0.834946234533923	0.341393420379976	1
Merged-chr14-21822945-4	chr14	21822455	21823455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8606.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	6.6680559250163	6.9431834020404	6.71439691005748	6.66975871021091	6.82678859682097	6.39791202367715	-0.201829128701435	0.467700007810816	0.818138252358197
Merged-chr11-79530531-4	chr11	79530037	79531037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033711)	promoter-TSS (NM_001033711)	72.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	7.27459975423761	7.31606906720147	6.94541627499448	7.06104030244944	7.6958422124374	6.88238679392574	0.123405409988507	0.692739216100905	0.918720528734386
Merged-chr15-50402768-3	chr15	50402280	50403280	+	758.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	486269.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.23561894878607	2.39118113341124	2.44565501936264	2.18010266132416	2.28686791175796	2.26424534028023	-0.768249315424712	0.372958545430897	1
Merged-chr19-41339393-4	chr19	41338910	41339910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	45660.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	8.65740613717369	8.54103205010164	8.14721133675784	8.2678395202721	8.45397009181196	8.02601551706817	-0.285997026610788	0.252264851372359	0.649735854202467
Merged-chr10-14206853-2	chr10	14206353	14207353	+	606.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	240474.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.97017450034772	2.80919707115267	2.57510092363548	2.70187531130991	2.58972613576069	2.84353350916603	-0.456435636207528	0.557760265871818	0.864328451488262
Merged-chr11-16999017-2	chr11	16998517	16999517	+	868.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9701.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	4.08338820348398	3.89920056617329	4.01505435234496	3.90857298145193	3.84863614334155	3.83464942961116	-0.417240874413463	0.407827488340867	0.781919160576668
Merged-chr6-72899969-4	chr6	72899502	72900502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	-23.0	NM_019715	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	7.68340596110326	7.33570856672537	7.48453628533627	7.72913961445973	6.98201509358538	7.29336788642378	-0.201373880412427	0.488939930050479	0.829423271678195
Merged-chr4-134005774-4	chr4	134005287	134006287	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4923.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	4.09491830139209	3.87565728598973	4.0019927579158	4.33851350057481	4.02051016381434	4.38682339070623	0.729566767906763	0.141886829566705	0.502858817385908
Merged-chr3-126663589-4	chr3	126663061	126664061	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	66610.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	5.85225805126275	5.98896728446503	5.34924902577018	6.29557467491255	6.65291389326272	5.93462627235363	0.966323295776383	0.00895170661483447	0.0931886547786385
Merged-chr15-80564366-4	chr15	80563861	80564861	+	918.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3891.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	4.36007645818708	4.23511012328965	4.29909063299672	4.27510063047342	4.38421123893459	4.49357308474125	0.223812243123899	0.615881080285973	0.8881342463256
Merged-chr7-122296371-2	chr7	122295871	122296871	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	7246.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.93106394558419	4.06801430402042	4.00736577429537	4.68781476695121	4.39696246811277	4.61445321906889	1.52198154447328	0.00123600684916768	0.0212622819734432
Merged-chr6-143079235-5	chr6	143078702	143079702	+	961.8666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362118, intron 6 of 25)	intron (NM_001362118, intron 6 of 25)	20950.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	6.4858162738516	6.66914723130443	6.23426216341256	6.66648225545001	6.94981219368937	6.67420829168525	0.459896999054052	0.105056303261968	0.432406256520669
Merged-chr7-25133250-4	chr7	25132761	25133761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-801.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	4.55063072914489	4.7466090567508	5.08289766316156	4.81636211478875	4.96189895404477	5.08244888984793	0.345617840649659	0.402424240997767	0.778019718782707
Merged-chr4-84884927-4	chr4	84884398	84885398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175275, intron 1 of 25)	CpG	589.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	5.20134531757078	5.18950582064095	5.30057799800516	5.35276758778703	5.18516831220043	5.33309574603814	0.121461645385121	0.726126409897714	0.929743505822386
Merged-chr1-34853943-2	chr1	34853443	34854443	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	3954.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	4.93166893615	4.78239785475406	4.80555644044094	5.08501309325965	5.01793200635704	5.01978481050784	0.431416706238238	0.250744126358043	0.648153521953385
Merged-chr12-73780091-4	chr12	73779508	73780508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121316.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	6.301849725811	6.46114207213705	5.98503197608585	6.40485577575441	6.37616769635449	5.68684909722541	-0.104886122279129	0.763051637402533	0.941682496514445
Merged-chr3-144606657-2	chr3	144606157	144607157	+	795.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	36230.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.06943982414773	2.98774164902783	2.96177844605104	3.03505134142918	2.9009737057167	3.37087061052097	0.449751062670651	0.515808638018435	0.843966720312586
Merged-chr5-139791930-3	chr5	139791421	139792421	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	CpG	385.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	8.96174937042651	9.22289791254976	8.475726601041	8.62856468074821	8.77508253586019	8.3940397516007	-0.435631591292969	0.100095716353067	0.421955278715811
Merged-chr17-71165181-4	chr17	71164673	71165673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18359.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.68728179914849	7.16491777360241	6.56077665134567	6.60247348565414	6.66435411476341	6.98675746875068	-0.133261199690167	0.658712505952305	0.905040375741474
Merged-chr8-72713504-2	chr8	72713004	72714004	+	667.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-9766.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	3.2780903647183	2.99956226035258	3.32209721093892	3.10729568559669	3.18828599707268	2.98449733492118	-0.441727884776454	0.51109811858116	0.841331921585713
Merged-chr11-70648797-2	chr11	70648297	70649297	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316728, intron 3 of 9)	intron (NM_001316728, intron 3 of 9)	1510.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	4.74523651468889	4.70527132342788	4.90987346550443	4.91939628513245	5.32859292881935	4.93869277783115	0.669932672607275	0.092533625412502	0.405215908567243
Merged-chr19-12439753-4	chr19	12439242	12440242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	11837.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.9295028388566	7.96610303705103	7.78546813354937	7.98709299856957	8.24482440355616	7.77155736732062	0.178129690763652	0.453895539571562	0.809979841654596
Merged-chr1-184035981-2	chr1	184035481	184036481	+	679.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 1 of 3)	intron (NM_022019, intron 1 of 3)	1600.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.72758592584588	3.76274188492347	3.76510846360112	3.86064926241803	3.93141757156467	4.12163452157292	0.689031029628913	0.18202325508253	0.564649559348511
Merged-chr17-23740411-4	chr17	23739895	23740895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-65.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	4.76689613288814	5.20176862941709	5.63026794634514	4.91156804474052	4.71157384343007	5.08496900725744	-0.702269161530352	0.1092167029393	0.441614418226498
Merged-chr4-148153018-2	chr4	148152518	148153518	+	777.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163707)	promoter-TSS (NM_001163707)	-883.0	NM_001163707	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	2.43977693474008	2.47562877025125	2.72396907151289	2.63084821653353	2.48922962813726	2.55064827423559	0.0597106011245665	0.939610673529175	1
Merged-chr4-130917805-4	chr4	130917316	130918316	+	975.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	4482.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	7.15297519276852	7.06217108619849	7.20177977852253	7.32114752400437	7.2530747016273	7.12386755213049	0.153298485151282	0.51520001082258	0.843376573195867
Merged-chr10-77033895-4	chr10	77033392	77034392	+	866.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031196, intron 1 of 5)	intron (NM_031196, intron 1 of 5)	680.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	3.61999996717779	3.90546674822357	3.69073042345779	3.41978629986497	3.66409022586918	3.42716373781466	-0.797208375729612	0.173867139946504	0.553140727918843
Merged-chr7-34958001-4	chr7	34957493	34958493	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	45586.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	3.8902926366207	3.9737995420599	3.72469305991798	4.06497424751482	3.60336979427673	3.56978901715013	-0.325876587309163	0.569306596862029	0.8688875602138
Merged-chr6-3397407-2	chr6	3396893	3397893	+	798.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	2178.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	5.10770826229178	5.53934829535335	5.25796899275944	5.41913580247035	5.62177705645589	5.18662548142579	0.224647549689207	0.54730001861538	0.859256588783723
Merged-chr19-8890402-2	chr19	8889902	8890902	+	829.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_104416, intron 2 of 2)	intron (NR_104416, intron 2 of 2)	1519.0	NR_104416	66276.0	Mm.27503	NM_025463	ENSMUSG00000071653	1810009A15Rik	-	RIKEN cDNA 1810009A15 gene	protein-coding	2.02175166568565	2.01984267671494	2.1474401187112	1.83707475174368	1.95124001408595	1.82097908347725	-1.61456972422224	0.117165648799492	1
Merged-chr2-35329131-2	chr2	35328631	35329631	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	7878.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.7867633436876	4.93920738865664	5.15869864318498	4.91405039409269	4.98116901636842	5.2521644330064	0.189145208172804	0.627597220002072	0.893330206932885
Merged-chr19-5963494-2	chr19	5962994	5963994	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 1 of 17)	intron (NM_001164057, intron 1 of 17)	712.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.16461082821103	6.24717355380297	5.88266083049686	5.98605962405861	6.08245163778248	5.51204803906936	-0.373445692347955	0.265096980316845	0.662860627571611
Merged-chr12-32642676-4	chr12	32642160	32643160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177675.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.89425864118396	3.77622644495728	3.46255084640612	3.66446179352351	3.70546326384918	3.59442887995339	-0.24641614588552	0.665760867431871	0.907920503949149
Merged-chr10-75838701-2	chr10	75838201	75839201	+	894.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3820.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	3.81047685367802	3.63991522505565	4.09001328447595	3.6999939368463	3.60797899076765	3.88642769217027	-0.393999545406	0.476951176750762	0.823048451178624
Merged-chr11-78265520-2	chr11	78265020	78266020	+	659.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002004, intron 6 of 38)	B1F1|SINE|Alu	3766.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	2.88462928390097	2.96036800282235	3.18732094151114	2.93222512539299	2.99688311579051	2.9120058206441	-0.284284220088579	0.67974558304416	0.914046291535714
Merged-chr10-60280052-4	chr10	60279568	60280568	+	952.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	B4A|SINE|B4	2440.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.73937911076548	6.96653980169002	7.01068239757261	7.32867728696049	7.49493949544671	6.8825127529632	0.549804111903974	0.0479250318857778	0.277543572741634
Merged-chr4-154159180-4	chr4	154158636	154159636	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151647, intron 3 of 3)	intron (NR_151647, intron 3 of 3)	1548.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	2.8346979739863	2.61741680302834	3.10744418364014	2.84717123435937	2.76322073986179	3.06889743501892	0.15421561110501	0.837584018172831	0.962141375366527
Merged-chr10-77975646-2	chr10	77975146	77976146	+	571.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3004.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	3.6743813549218	3.70959121765014	3.85677589791658	3.9630555273155	3.85911738247441	3.60882047103006	0.263373428347681	0.62650555300324	0.892916235446326
Merged-chr1-170901745-4	chr1	170901248	170902248	+	936.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11193.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	4.77480496246346	4.81344268863556	4.86272539127474	4.90985367234417	5.11728681486076	4.96468833194301	0.422612844193663	0.266550204759394	0.664166899200562
Merged-chr8-90908305-4	chr8	90907811	90908811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	CpG	-23938.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	8.29534710151255	8.17723768186309	8.14464132631692	8.27012686793818	8.05391790281669	8.03832044138898	-0.117044847850563	0.585418934583725	0.874991904941749
Merged-chr2-29101022-3	chr2	29100533	29101533	+	806.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-23959.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	5.00085532418095	5.38800672546855	5.23528563972532	4.96212635837004	5.12870676294305	5.13641146496548	-0.291735802252727	0.434523080963115	0.798440839184216
Merged-chr2-93849913-4	chr2	93849423	93850423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	20.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	5.7248690383289	5.95064297463514	5.8497885598882	5.66460854963504	5.70419068123556	5.65261336818769	-0.307432082469264	0.320444692099251	0.714304595483135
Merged-chr3-79842319-4	chr3	79841835	79842835	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	327.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	7.34736915305299	7.84929237881094	6.8160762538297	7.41651525427813	7.8833916299113	7.07683235554577	0.136726670050218	0.69966707029797	0.920673966305366
Merged-chr11-8608095-2	chr11	8607595	8608595	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	B1F1|SINE|Alu	56440.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.34002441246386	5.40037342848802	5.37401342093869	5.19663644349718	5.04238397269023	5.04246008579037	-0.560707104214464	0.108544416298234	0.440230249139377
Merged-chr5-93204817-2	chr5	93204317	93205317	+	719.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1678.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	4.94891081429991	5.40030598677997	4.71985161977699	5.18189122534678	5.08407902522786	4.70027468023354	-0.11530585625051	0.792076469874403	0.949889007628694
Merged-chr14-20661168-4	chr14	20660664	20661664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	3410.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	5.30136488379773	5.33353936705499	5.41633311641387	5.13834869806429	4.74134794332541	5.30363451305998	-0.577534884121128	0.131485097533956	0.48479293843552
Merged-chr5-65956061-4	chr5	65955660	65956660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10964.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	7.30931906608428	7.07424135641437	6.28235285036822	7.12035432610942	6.96438291269075	6.61139429179412	-0.0758866015198163	0.827752296373758	0.959510695872191
Merged-chr19-25052471-4	chr19	25051955	25052955	+	965.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	52926.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.77858644007615	5.35154430174301	5.03996361494351	4.97455464920965	4.94259030422414	5.07011161003288	-0.19375746851979	0.628495156520437	0.893765060420619
Merged-chr7-118283383-3	chr7	118282884	118283884	+	825.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	39477.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	3.87643914241882	3.60699517805528	4.02289348844565	4.02241648488295	3.73420445101597	3.63422774765713	-0.0970070019301617	0.862278899258553	0.967996224966109
Merged-chr2-153784199-4	chr2	153783702	153784702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 3 of 7)	MLT1E1A|LTR|ERVL-MaLR	3323.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	6.30072561162356	6.76483157430488	6.18215699109926	6.4642384616714	6.55092606303506	6.3687513153388	0.0225375927980272	0.940949202069933	0.986888338850358
Merged-chr11-69671391-4	chr11	69670883	69671883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159375, intron 1 of 10)	CpG	1040.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	8.53018594827071	8.50007878005443	8.03566615509369	8.21460770611722	8.46779518093092	8.12093746581392	-0.139539906783261	0.572640369815727	0.869896838396072
Merged-chr11-86484488-4	chr11	86483955	86484955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	-202.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	8.2408065775172	8.43902241653976	8.16811604318302	8.04327577607978	8.3895931021321	7.90422484251003	-0.215100301120817	0.374178388001759	0.757933699438553
Merged-chr11-102409544-2	chr11	102409044	102410044	+	704.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2027.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	6.4115243658285	6.5170220467151	6.31868722524844	6.33226171821042	6.49021283134082	6.14528064126297	-0.132864552637169	0.637361568219793	0.897347930665099
Merged-chr9-119417368-1	chr9	119416868	119417868	+	580.0	f1_balb.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	15190.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	2.74103641265856	3.04317476011542	3.24302110258903	3.29657528664089	3.11646762865589	3.6209994915297	1.41015591929654	0.0554186752908135	0.302736156354911
Merged-chr19-37443028-4	chr19	37442462	37443462	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8121.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	3.17438203355571	3.29461161488517	3.355264419974	3.28296645162377	3.39817891155151	3.42593736678832	0.383152210692079	0.527688777090526	0.850108008834301
Merged-chr6-83634810-3	chr6	83634312	83635312	+	885.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21304.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.91956870449937	7.28690456045476	7.20551072096188	6.94705099862877	7.03003772537113	6.82211451348298	-0.310149072050559	0.228181858327967	0.623147576440797
Merged-chr17-33566405-4	chr17	33565910	33566910	+	925.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	10703.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	4.21835399799028	4.57169154163586	4.87348331642774	4.56703973072957	4.59042932832981	4.64910584553147	0.0717282758780767	0.875036480276568	0.970842352575132
Merged-chr10-95502440-2	chr10	95501940	95502940	+	541.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	-491.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	3.58263314197384	3.4216177484492	3.41275728705821	3.29709839343641	3.34574718174908	3.31266183171105	-0.607603903842307	0.309036962708766	0.704802606494279
Merged-chr3-95457907-4	chr3	95457334	95458334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	23444.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	4.99823465852717	4.56734510566624	5.07574174184433	4.93813695981701	4.7086525287784	5.20131954944605	0.135448495315177	0.751477400095306	0.937886504040509
Merged-chr3-126630799-1	chr3	126630299	126631299	+	767.0	f1_balb.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33848.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.07676323671352	6.03708594365966	5.67237226604905	6.30063319188262	6.39954990817773	6.18608484225394	0.591071759782523	0.0513778283505357	0.288991167538118
Merged-chr11-106658209-2	chr11	106657709	106658709	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-45279.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.26042281903136	5.94658130438493	5.84876940698834	5.76594850546862	5.83887322346074	5.78138435728203	-0.424154260993142	0.174551542889575	0.553857442838487
Merged-chr1-131138900-4	chr1	131138406	131139406	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	-672.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	5.95753725938099	6.17283883891708	6.03617288584257	6.06211660377303	6.21208114980415	5.90652639118223	0.0279408503517745	0.925305985525701	0.983166193538686
Merged-chr11-115677751-2	chr11	115677251	115678251	+	992.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	21783.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.5064099204623	5.65275012955258	5.27662353180231	5.73314083466169	5.77851728006609	5.94902818685757	0.585053774849683	0.0775645867805902	0.367539529432765
Merged-chr11-82007930-4	chr11	82007397	82008397	+	763.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D|LTR|ERVK	-27680.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	5.65456229155388	5.51319997934007	5.56559058480546	5.65948983051532	5.48236237198642	5.70833642164982	0.0610436386227046	0.850012473401794	0.964784152666354
Merged-chr10-62483686-2	chr10	62483186	62484186	+	622.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	2912.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	3.20336535203173	3.40501375903561	3.20319042369026	3.20551567814217	3.19107403114041	3.44199262537936	0.00153074508573634	0.998060324405968	0.999579683478894
Merged-chr7-143056122-4	chr7	143055629	143056629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-2443.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	5.44167485461194	5.41527755876402	5.7640304043163	5.25653977479787	5.60015912343628	5.7282645436292	0.000450803707614949	0.998983629617197	0.999836773677036
Merged-chr17-31856027-4	chr17	31855572	31856572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-268.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	5.22561263588327	5.06402538485588	4.77373301995996	5.09255780321847	4.85589626330206	4.71451318128687	-0.30856151641367	0.446213426436631	0.805727221359847
Merged-chr6-51510276-4	chr6	51509735	51510735	+	839.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13668.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	2.89902908033547	2.86249118630841	3.21524216479812	3.41084245928101	3.36896666468177	3.11067398425711	1.38320355118129	0.0449860915472679	0.267525108508703
Merged-chr11-3176659-2	chr11	3176117	3177117	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	16846.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.5521872591363	6.96590541852991	7.26848289070928	4.56057920895359	4.20752112298702	7.46462952113859	-0.879288853927945	0.70876547402748	0.92375127577894
Merged-chr10-62544621-2	chr10	62544121	62545121	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-17176.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.41973292216889	4.36679793484954	4.58319190972808	4.33623409510235	4.11435327882881	4.2259922373545	-0.605937923297981	0.181965853115291	0.564609853313466
Merged-chr4-66843468-4	chr4	66842982	66843982	+	964.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	15931.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.91201780007119	5.85869601452222	5.91301657660289	5.19885528917121	5.19313418097455	5.03660584214903	-1.41345816612917	2.23129591016319e-05	0.000801301985726624
Merged-chr12-85974221-4	chr12	85973706	85974706	+	943.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	MLT1F|LTR|ERVL-MaLR	104835.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.39062046507719	6.69461269353587	6.47622441939272	5.98730683984359	6.33321177213853	5.99660950366336	-0.660910698417236	0.0270659680235525	0.195919308469009
Merged-chr18-80714998-4	chr18	80714515	80715515	+	896.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1944.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	3.1872876923483	2.77203111522028	3.05854988271317	3.28187089571694	2.82118419891907	3.01084801175195	0.150838831864351	0.837496424622579	0.962133986386607
Merged-chr17-36967021-4	chr17	36966500	36967500	+	921.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8408.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	2.94525604866738	3.14674576070587	3.38240002345648	3.02292572905656	3.19541383570628	3.2389113659113	-0.0386450693763341	0.95410927329616	0.989495550016789
Merged-chr16-16983902-4	chr16	16983401	16984401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	CpG	519.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	7.65081214780447	7.84481932875108	7.393924464384	7.5795804572882	7.17373487037589	7.44028988140584	-0.357476699697409	0.16765947481158	0.543689617009274
Merged-chr3-144039649-4	chr3	144039098	144040098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162734.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.96883601679544	3.98151724596667	4.01284126130999	3.98479234481615	4.03202655380184	3.98430433982544	0.0477457167372074	0.921994656939097	0.982542868764899
Merged-chr17-34157108-4	chr17	34156606	34157606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010387, intron 2 of 5)	intron (NM_010387, intron 2 of 5)	3915.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	3.98231013611452	3.59103841653231	3.84789639212791	4.16415606104427	3.91421136161672	4.37032675817893	1.00715936429207	0.0626256311291473	0.325483233030526
Merged-chr2-133550642-4	chr2	133550131	133551131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1528.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	6.55559844499151	6.68336002023258	6.46479353200166	6.13444854701054	6.45788571281012	6.16271193750232	-0.494681628619027	0.0819239172969483	0.378679448943503
Merged-chr17-26242216-4	chr17	26241720	26242720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2022.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	6.64835080441941	6.51162180145683	6.57310784590841	6.96049410077306	7.09304208232438	6.79665010266044	0.600743266584221	0.0193452958698734	0.157982469206048
Merged-chr19-3934770-2	chr19	3934270	3935270	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	-416.0	NM_019449	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	5.04082109363758	4.53621170955164	5.12624562655875	5.10688375706132	5.26404947241411	5.28373958213897	0.636440359118305	0.116444410225747	0.455614901065739
Merged-chr9-48580988-3	chr9	48580446	48581446	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	24177.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	3.22038236179153	3.01102867187248	2.91994462141713	3.23424969575861	3.48961568853534	3.6747837992785	1.69707723124808	0.0148993290576462	0.132013989162882
Merged-chr10-80267983-2	chr10	80267483	80268483	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	2992.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	2.30164373509339	2.26939154610089	2.47801865106339	2.3590928074166	2.31646410738143	2.29589844615062	-0.157165128713744	0.850507293259245	1
Merged-chr10-78148699-2	chr10	78148199	78149199	+	812.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21069.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	6.82448212537119	6.81937045384266	6.72146311506359	6.46746111178735	6.81164601110712	6.6842181930413	-0.19605992074277	0.456361565836291	0.811572799080346
Merged-chr3-27291155-4	chr3	27290658	27291658	+	973.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25919.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.36053787519854	5.63089674927318	5.66650070048767	5.83916819706852	6.26927714439005	5.70193554445603	0.755526735370614	0.0286336025012223	0.202821554177382
Merged-chr17-5765949-4	chr17	5765457	5766457	+	933.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32700.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.66512112947795	3.30025225229682	3.27491781067882	3.3735156343797	3.42210402371629	3.62473932119057	0.154903062107368	0.802577768050686	0.953250127383257
Merged-chr10-7142472-4	chr10	7141971	7142971	+	982.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	69766.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.60749311113062	2.68569587304336	2.84165416359355	2.55341135192094	2.52083166586835	2.54696752963482	-0.982297784089629	0.204170403600589	1
Merged-chr8-72316497-3	chr8	72316027	72317027	+	612.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2535.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.74975974495527	4.32192518229204	4.81232419737898	3.88142014817051	3.58131057613695	4.21871800988978	-2.07039855659961	0.000169970082183922	0.00438810753905051
Merged-chr17-32966883-2	chr17	32966383	32967383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153063, intron 1 of 3)	RMER21A|LTR|ERV1	1052.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	5.00515440387162	5.31678610992902	5.27836122862096	5.14598338736283	5.26141034549855	5.31082804973954	0.0698758274511449	0.846189243012583	0.963969175908205
Merged-chr13-95893490-2	chr13	95893001	95894001	+	699.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.98577868444059	2.9957880285756	3.0613504313317	3.09640503492449	2.88250088925635	3.13329910380584	0.107389577637393	0.872853253839769	0.970324308510602
Merged-chr16-91885213-2	chr16	91884724	91885724	+	881.349976	f0_balb.idr|f1_balb.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	46406.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.39574010384717	3.3932251846872	3.38889625733747	2.86999682665589	2.72017759665078	3.18353018454059	-2.22895846504904	0.00304470956889031	0.0425717011944588
Merged-chr11-82022845-4	chr11	82022322	82023322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12755.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	6.3364794876102	5.59220697420322	5.77758855723471	5.76373056707616	5.92699965971434	5.78740144547019	-0.210665179476694	0.55560183984098	0.863289501518253
Merged-chr1-165705598-2	chr1	165705098	165706098	+	616.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	2496.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.60841939074834	4.69135915948463	4.85726589078169	5.04177210103583	5.06263232809403	5.1289121684167	0.802900512892311	0.0359389065801065	0.23304274771801
Merged-chr4-32983475-4	chr4	32983016	32984016	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027491, exon 1 of 7)	exon (NM_027491, exon 1 of 7)	518.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	5.47856345832349	5.38959103692998	4.7076515841249	4.52391336541452	4.1268160465606	4.06501425628011	-2.32037662769311	3.55482387184145e-06	0.000164419002072364
Merged-chr9-35199953-4	chr9	35199460	35200460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177847)	promoter-TSS (NM_001177847)	5.0	NM_001177846	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	6.57260050378642	6.88217094706872	6.89733487061531	6.57431072970412	6.90955736623831	6.54698219871333	-0.142406161373796	0.611524660676978	0.886146894079858
Merged-chr2-23042399-2	chr2	23041899	23042899	+	677.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2158.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	4.05760791812695	4.06658322851993	4.17770299292082	3.70242162628507	4.37808230427953	4.20057213782487	0.0908859064531968	0.865566719761348	0.968641478520565
Merged-chr19-21733954-2	chr19	21733454	21734454	+	654.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44386.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.25188624557439	3.30367164772502	3.33708217573342	3.26614304524899	3.3408512138006	3.29554981278901	0.0266393380212483	0.964881261479447	0.991685174040957
Merged-chr18-83853985-4	chr18	83853486	83854486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	232576.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.14492103471904	4.5709858513217	4.57642325030787	5.15211055461763	4.59094434785134	4.60098833422161	0.0241774407360865	0.959271734365551	0.990174309444982
Merged-chr5-145114300-4	chr5	145113796	145114796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	40.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	7.71004218278084	7.83430641312081	7.85554014569721	7.60083333338495	7.7463280887032	7.51760560003534	-0.243495834284377	0.275793608309407	0.673242318833586
Merged-chr9-118703420-3	chr9	118702916	118703916	+	797.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8276.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.21896459928562	3.31792431671308	3.76666514397845	3.19932178061924	3.13613173615338	3.74387489202162	-0.247579289310172	0.718300309687145	0.927293456311605
Merged-chr6-71272505-2	chr6	71271980	71272980	+	644.0	f0_balb.idr|f0_c57.idr	TTS (NR_106192)	TTS (NR_106192)	461.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	7.77913179067633	8.39137028909755	7.92368177576245	8.01302735193921	8.29327689714869	7.89953339506015	0.0283995368713465	0.915720154864863	0.981200822249461
Merged-chr10-89741221-4	chr10	89740722	89741722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3769.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	3.5543048094992	3.55290228002174	3.19856668097843	3.27555386344524	3.56244423614349	3.39351708048183	-0.11773463140644	0.852164854063788	0.96531854415899
Merged-chr9-95512031-4	chr9	95511539	95512539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-43.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	8.5127053739133	8.99621368651273	8.51946152261806	8.45464110997407	8.91179856375144	8.50361061233817	-0.0771178037319642	0.765130102008831	0.942123616786297
Merged-chr10-78351890-4	chr10	78351333	78352333	+	738.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-133.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	6.08699611510727	6.22940032194466	6.17788966340739	6.2076187772481	5.87173813515034	5.97175499672166	-0.245373624155472	0.407467605299381	0.781607370135804
Merged-chr12-57231823-2	chr12	57231323	57232323	+	864.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164370, intron 1 of 9)	MTD|LTR|ERVL-MaLR	1398.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	4.08644297441727	4.04839134158594	3.83869801358998	4.01263836610502	4.21302140702855	4.0140502423016	0.253415287373306	0.612035022137147	0.886473391147181
Merged-chr14-77867946-2	chr14	77867450	77868450	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	6967.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.07101960069709	3.39204776185893	3.2508769801759	3.60936629323587	3.78152813267758	3.90744489143344	1.9525985718771	0.00211006319654732	0.0321682188454214
Merged-chr7-88270124-2	chr7	88269624	88270624	+	747.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7961.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.19101596121377	6.08618119013206	6.13171628645889	6.17771477606695	6.08409133345696	6.36995639350768	0.117074872364064	0.682139540413859	0.914973512569823
Merged-chr3-27692402-4	chr3	27691884	27692884	+	934.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18068.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	5.38226331666486	5.37860974924565	4.8153021099004	5.09566201953383	5.24589050630889	5.07946487860505	-0.173616627577151	0.658466927041873	0.905014667687917
Merged-chr12-99902681-4	chr12	99902147	99903147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18132.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	7.94062610016697	8.19562825188735	7.73307472326046	7.96851576119994	8.28878184024925	7.72499517249739	0.0670207612118626	0.799389952484386	0.952248176414355
Merged-chr13-51647916-1	chr13	51647416	51648416	+	542.0	f1_balb.idr	intron (NM_025415, intron 1 of 2)	intron (NM_025415, intron 1 of 2)	2684.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	2.28527486126184	2.18300510780453	2.42584799307784	2.20787972070334	2.2373940944169	2.30946929857097	-0.31904294753492	0.708932792783059	1
Merged-chr3-142473450-2	chr3	142472950	142473950	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGAA)n|Simple_repeat|Simple_repeat	-23484.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	2.14582991854854	2.18341327041864	2.09259892500887	2.23799333600878	2.14299945855189	2.36643446613293	0.745285557194746	0.398829824736016	1
Merged-chr2-27411868-4	chr2	27411386	27412386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15722.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.58417155332843	6.11700656007896	6.432833301458	6.64613513144206	6.64278750613558	6.6146969427588	0.392699215081734	0.165704856052585	0.540863657924297
Merged-chr17-47754005-1	chr17	47753505	47754505	+	662.0	f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B1_Mur3|SINE|Alu	16074.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.89148653233999	6.94226415022393	6.76194007576388	6.80627537986934	6.91054457289291	6.88069137915205	-0.00832901849504502	0.973063178565575	0.993943197210219
Merged-chr17-47773698-2	chr17	47773198	47774198	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-12046.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.31827775919836	2.21325129602263	2.23445309983962	2.59855805258519	2.21327797314712	2.57445243113474	1.38386264085257	0.118080998693821	1
Merged-chr8-26693951-4	chr8	26693451	26694451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	130472.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.31701986249749	5.14161528127912	5.23916465419931	6.12283617471272	6.31294358236666	6.27054338055098	1.82975619930966	7.20118349242103e-09	6.77057713036575e-07
Merged-chr12-85385045-3	chr12	85384543	85385543	+	826.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10326.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	7.61886173681668	7.53588083108831	7.75728705526346	7.22696595801629	7.52753684202179	7.63291534428379	-0.240714790323971	0.32118720710004	0.714789344506301
Merged-chr5-101827116-4	chr5	101826604	101827604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61974.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	4.27207653791869	4.00325077503369	4.01166843645229	4.23242977272053	4.04742028441517	4.22409558782368	0.167879611371547	0.729742269432752	0.930635866770147
Merged-chr10-13553148-4	chr10	13552651	13553651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347361)	promoter-TSS (NM_001347361)	-9.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	6.08126225078535	5.98042452776006	6.20184382983776	6.28382706668439	6.32043989712075	5.73103581103602	0.114443282134203	0.721663552304426	0.928575329923248
Merged-chr6-99026310-3	chr6	99025807	99026807	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1991.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.31189419388513	3.03840040642132	2.84713691780929	3.15819750883249	3.29841655133334	3.29494774871031	0.698681158216197	0.323058427805905	0.716464875419754
Merged-chr13-44229542-4	chr13	44229017	44230017	+	973.1875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13030.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	4.50345435227407	4.20599223089658	3.87167032888822	3.76159672938491	3.67832012607703	3.59675523434518	-1.68111283410885	0.00272558053456761	0.0391152302725598
Merged-chr8-47670791-1	chr8	47670291	47671291	+	544.0	f0_balb.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	4368.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	3.81437877271533	4.29168002025865	4.28195621031579	3.9661027751382	4.40601079538898	4.34898660662702	0.301265030561874	0.564363895058197	0.866317215437451
Merged-chr17-62576106-4	chr17	62575617	62576617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	305200.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	5.25727354934895	4.94264399675029	5.08196005830688	5.0963210065836	5.14368329242712	4.72195361517843	-0.185472114360108	0.638568531569716	0.897621994373951
Merged-chr15-53349112-4	chr15	53348605	53349605	+	865.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-2922.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.11179392719941	2.97443749782393	2.94657527163046	3.0797164558142	3.2433009837301	3.30871066123469	0.872316206303892	0.188702098941848	0.574222837446979
Merged-chr11-82570214-4	chr11	82569706	82570706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-63147.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	7.1249267393367	7.37472335340361	7.28987999081518	7.36899713083341	7.58485229677496	7.48608924725065	0.322146529271279	0.173749226724067	0.552967131660208
Merged-chr19-44118028-3	chr19	44117525	44118525	+	818.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081077, intron 10 of 13)	intron (NM_001081077, intron 10 of 13)	-10548.0	NM_001162410	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	3.79950775689844	3.60218974020462	3.83190683032416	3.59358966297593	3.94970040960757	4.08615316645722	0.460504464787141	0.404961183484161	0.779879311621003
Merged-chr2-103569955-4	chr2	103569476	103570476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	3666.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	2.7873142003271	2.640944750911	2.89998469269505	2.87046582314327	2.9639732991304	3.25167187480296	1.26352563611091	0.084111985631783	0.383747675208323
Merged-chr1-39615597-1	chr1	39615097	39616097	+	667.0	f0_balb.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	35585.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	4.10825580759523	4.08710509681	4.30264328546665	3.90302222683369	3.63886006919499	4.15661079503026	-0.774565972420912	0.141491023569739	0.502183459290427
Merged-chr19-36083103-4	chr19	36082597	36083597	+	905.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	-619.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	3.56738697346798	3.72831157660113	3.850425729619	3.64253834370825	3.77587796082926	3.6667197531105	-0.0491328276909813	0.928332556136335	0.983802612059568
Merged-chr19-60790103-3	chr19	60789610	60790610	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010123, intron 1 of 21)	CpG	583.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	8.61855653580523	9.21968217730697	8.65572438306565	8.72218021910325	8.80164774048699	8.7060067713339	-0.169216959613598	0.494848425900396	0.832128327998775
Merged-chr6-39232871-4	chr6	39232374	39233374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26101.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.80845243930851	6.53582734523592	6.65954383117455	6.4859666059081	6.63817178453535	6.73395228391227	-0.0842435606021593	0.751872188827058	0.938016588905039
Merged-chr8-119557310-2	chr8	119556810	119557810	+	872.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019709, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	1451.0	NM_001167910	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	3.95847879090734	3.79434401106696	3.9254311845075	3.9351674657798	3.88525033276745	3.7360014716653	-0.104527351337157	0.839531909809356	0.962784121274377
Merged-chr5-140616368-4	chr5	140615847	140616847	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	9006.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	7.92165268544236	7.81907795522017	7.64267456532587	7.88588096840419	8.04912544809213	7.70856890973061	0.130208433493535	0.576101436565936	0.871520614035206
Merged-chr13-102700986-4	chr13	102700487	102701487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	7429.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	5.66866147400997	5.67926184867699	5.8848120970525	5.8640666421174	5.82181993787925	5.48877677802248	0.0103977479981354	0.974433449110668	0.994276686350905
Merged-chr12-111933491-4	chr12	111932984	111933984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10998.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	4.94039176697318	5.09394101255995	4.79540858961944	5.19069760661485	4.89933122105337	5.01287844099401	0.171258973199081	0.657683668907425	0.904859102731141
Merged-chr11-60208659-2	chr11	60208159	60209159	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1812.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	3.78645651946964	3.73407526380542	3.66143425556468	3.74682876752285	3.40223505966266	3.56853887840603	-0.53231190366911	0.346548593395078	0.734711689104559
Merged-chr7-31117156-2	chr7	31116658	31117658	+	998.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011322, intron 5 of 5)	intron (NM_011322, intron 5 of 5)	-1832.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	5.10939184978984	5.04605052056944	5.60613890594913	5.03116732324649	4.72124092697249	5.2962482349576	-0.501583801176099	0.230915494211862	0.626639372590848
Merged-chr2-167981923-2	chr2	167981423	167982423	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080708, intron 20 of 21)	intron (NM_001080708, intron 20 of 21)	28670.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	2.55149716353113	2.24733486420905	2.56059335581756	2.32747771556955	2.07327869393511	2.38221701855117	-1.30254143440067	0.159767776121809	1
Merged-chr2-158132640-2	chr2	158132140	158133140	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13752.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.62073892384353	6.73411496702222	6.69968183356107	6.54696852415144	6.58229179500688	6.57791128307754	-0.18446326683161	0.467932022256285	0.818205691164444
Merged-chr13-43753241-1	chr13	43752741	43753741	+	920.0	f1_balb.idr	Intergenic	Intergenic	-31871.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.51833121623252	4.65102812536593	4.5361435679026	4.36951413864792	4.15382201588224	4.43542418324877	-0.659435423188725	0.135160419056219	0.491294119824757
Merged-chr16-17529644-2	chr16	17529144	17530144	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026909, intron 3 of 4)	B3|SINE|B2	1408.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	3.58691710265488	3.80437627477989	3.84532533950325	3.54767944418403	3.26793701682558	3.38721093561833	-1.2538302109454	0.0344355082256854	0.227315332680907
Merged-chr7-25686935-4	chr7	25686505	25687505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	3.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	7.07299014688234	6.87313862834513	7.06923265944596	7.09584406686114	7.0051625892776	6.99537889516127	0.0428245697588903	0.860155232564873	0.967441103100897
Merged-chr2-180170786-2	chr2	180170286	180171286	+	820.575012	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-802.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	4.68769507456511	4.6344197048562	4.69987777515713	4.28514466837703	4.12318432617006	4.35673628011233	-1.08933562251705	0.0127297388664464	0.119207043403267
Merged-chr17-7430486-4	chr17	7429983	7430983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45178.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.84496821249864	3.75035288798857	4.06775107664032	4.18038581471354	3.87123134915283	4.30858321606101	0.706183580766818	0.176199006892628	0.556439830724144
Merged-chr10-37233000-5	chr10	37232458	37233458	+	792.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94032.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.85564772152688	6.85526365231946	6.86271809228434	6.75300712951229	7.27095025747657	7.0049934037253	0.272069120226373	0.310681162594308	0.706022433069834
Merged-chr11-63138104-2	chr11	63137604	63138604	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	5301.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	3.12479549426329	3.28260633093387	3.502695609969	3.27021508210607	3.13476337172515	3.52162616938447	0.0193279272797379	0.976064209068442	0.994572735300192
Merged-chr3-152189469-2	chr3	152188969	152189969	+	907.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356364, intron 1 of 2)	intron (NM_001356364, intron 1 of 2)	4376.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	2.78975588245594	3.04516231123738	2.92161852295727	2.69161059475501	2.75485751721414	2.93475926481028	-0.655823193998432	0.366229413894784	0.751283584197618
Merged-chr15-73644146-4	chr15	73643652	73644652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19408.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.05810810811464	6.19434917578212	5.92070397402092	6.13923813804958	6.30738994843408	6.05366193672465	0.185877431263301	0.52789279141503	0.850219758590516
Merged-chr4-135920659-4	chr4	135920173	135921173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024243)	promoter-TSS (NM_024243)	-53.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	6.55770456530299	6.62191368482869	6.60418955859287	6.700536795403	6.64690670885949	6.6297363994278	0.1040019361076	0.681212300913878	0.914599647187446
Merged-chr5-63826112-2	chr5	63825598	63826598	+	830.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	13603.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	6.29979037076549	6.27166357794318	6.2140623532681	6.25982022205113	6.18800989245046	6.0783313772459	-0.139367254273809	0.615362467652379	0.887909553269967
Merged-chr11-70684350-2	chr11	70683850	70684850	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190379, intron 3 of 20)	ID4_|SINE|ID	3755.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	6.00726995565913	5.77345149622567	6.08978762294926	6.18855678017275	6.03868268428863	5.81929262242818	0.129082358450151	0.677068056029512	0.91268374750576
Merged-chr12-51866492-4	chr12	51865994	51866994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36958.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	8.022974958057	7.77390007582629	7.48312023737083	7.76114924186509	7.5985047636612	7.46522712451364	-0.24481294986992	0.33578205571514	0.725879995869482
Merged-chr5-96177197-4	chr5	96176695	96177695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15205.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	5.25755020588051	5.47873795292877	5.56374188539726	5.13426871370375	5.14004915257526	5.1471542449667	-0.588946145467008	0.0937380636559721	0.407830420950909
Merged-chr6-131244688-4	chr6	131244180	131245180	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 2 of 7)	intron (NM_008462, intron 2 of 7)	2682.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	6.2777975131011	6.52734416835154	6.51724594361178	6.04310934850249	6.34609791565981	6.28279290524482	-0.345982099344451	0.227814752838229	0.622917746842476
Merged-chr3-8957031-4	chr3	8956534	8957534	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	7112.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.44405913848965	4.26071864010568	4.39285705075484	4.45597624735109	4.47482220883822	4.07754811793355	-0.0181771219677687	0.968928218872529	0.992882522302438
Merged-chr3-127786445-2	chr3	127785983	127786983	+	762.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-3389.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	4.71052789948499	4.41656817415894	4.95864021922906	4.1204038373789	4.47678303303322	4.67788326572822	-0.644447787862402	0.177364371466235	0.558275118873952
Merged-chr8-23038649-4	chr8	23038266	23039266	+	894.3583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	3667.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	2.81277910625627	2.77788631286698	2.99187194796717	3.34566875861854	3.13013914959108	3.50843548816661	2.22240825868074	0.00195422746547452	0.0304052653229626
Merged-chr13-85509928-2	chr13	85509423	85510423	+	858.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-220437.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.8053665540639	2.67151946300462	2.77278578754961	2.55070973653181	2.61971518244802	2.6610699878756	-0.782215317918222	0.298651701068496	1
Merged-chr9-110653457-2	chr9	110652957	110653957	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	704.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	7.01198362903868	6.79677825307019	6.59583825838116	6.85599851331247	6.85163410710748	6.54685011988594	-0.0832423214288693	0.762054973465425	0.941406354590576
Merged-chr13-111725527-4	chr13	111725057	111726057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	39379.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	5.44031827037899	5.22990451269974	5.05843219201145	6.15484918785453	5.89990494128269	5.41532720379254	1.131240305208	0.00277979571326109	0.0397015519582954
Merged-chr17-26237939-4	chr17	26237459	26238459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	6283.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	7.68561561518805	7.42339171321901	7.26990437105829	7.58064135650413	7.73812712535492	7.18983739178889	0.0817416019907269	0.761657666007756	0.941258867861232
Merged-chr13-28958009-4	chr13	28957511	28958511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4312.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	5.49945450639722	5.09696387338558	5.35182174403758	4.3509611966039	4.44440594931798	4.27107136255291	-2.20373162063146	4.21742407258076e-07	2.53374312080361e-05
Merged-chr15-34046006-1	chr15	34045506	34046506	+	781.0	f1_c57bl6.idr	Intergenic	RLTR41|LTR|ERV1	-36713.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	5.18362737245394	4.66490927635207	5.2725632646364	4.95691774727051	4.66990447023446	5.21676343944361	-0.222999420675441	0.608282517689206	0.884952472844764
Merged-chr1-138963452-6	chr1	138962888	138963888	+	998.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166501)	promoter-TSS (NM_001166501)	-321.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	8.06135754173372	8.02477637258341	7.95510910199085	8.21716314603255	8.11905637762754	7.6462008641887	0.0138083305434619	0.955199802968007	0.98974202431386
Merged-chr16-36745205-3	chr16	36744702	36745702	+	806.144409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	39760.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	3.93718437190294	4.00358580660815	3.97375826144189	3.75907999770407	3.61836462736263	3.94688716952877	-0.63774169999984	0.222696904975455	0.617630960242573
Merged-chr16-23235536-4	chr16	23235020	23236020	+	847.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	9499.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.8424172394147	3.5356683123657	3.67400018432523	3.7918424230875	3.57467928932615	3.58136480056911	-0.128605273083558	0.818902264365343	0.95713841971837
Merged-chr4-128797045-4	chr4	128796549	128797549	+	927.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081098, intron 1 of 8)	L1M5|LINE|L1	9063.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	4.49705939692524	4.07744940315651	4.16797939877812	4.0171509477197	3.94137258557747	4.19020856199579	-0.61599270774674	0.215250696527905	0.608619363299426
Merged-chr4-118621511-2	chr4	118621011	118622011	+	598.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026932, exon 3 of 9)	exon (NM_026932, exon 3 of 9)	712.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	4.19106768978139	4.12808614183197	3.99021170800607	4.23946209011293	3.99233891481638	4.05996337164762	-0.032856018388948	0.946105065760397	0.98796006280508
Merged-chr6-33059769-1	chr6	33059269	33060269	+	1000.0	f1_c57bl6.idr	intron (NM_001355667, intron 1 of 8)	intron (NM_001355667, intron 1 of 8)	491.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	6.35663469935887	6.94519063644039	6.20112664307523	6.33220554949726	6.58821018563162	6.17223236806628	-0.27465639621009	0.413164244247838	0.784773447973478
Merged-chr16-92865075-3	chr16	92864594	92865594	+	853.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39020.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.16092989940719	6.82585224662518	6.85197589167923	6.64735863997706	6.36147156264433	6.68046899582147	-0.621227475422019	0.023729969158758	0.180784038982048
Merged-chr2-158139644-2	chr2	158139144	158140144	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	6748.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.0784859807209	4.05152834508832	4.56849976295737	4.25073365780191	3.95654223501293	4.93173301205804	0.48917120726501	0.386477642632991	0.767131316757601
Merged-chr7-75784045-2	chr7	75783545	75784545	+	806.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64293.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.1259210192594	4.22669353260607	4.5392515165188	4.3288884111147	4.26759738846067	4.48736215923477	0.159103372741047	0.732663049238835	0.931839011711124
Merged-chr1-52844910-4	chr1	52844395	52845395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-143.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	6.25050385936982	6.43364987691439	6.4593214191018	6.29326945919941	6.51561699450699	6.42831916819736	0.0619300767716755	0.821648816398164	0.958023303204974
Merged-chr7-126652832-4	chr7	126652316	126653316	+	895.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029339, intron 1 of 9)	intron (NM_029339, intron 1 of 9)	3507.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	4.08222555253356	4.3575368244065	4.26848865556182	4.57446160626599	4.29682065117379	4.19552169159675	0.337168440083693	0.474712895461722	0.821664499521211
Merged-chr2-132844192-2	chr2	132843692	132844692	+	849.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025676)	TTS (NM_025676)	-2474.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	4.2407750627315	4.54915315740176	4.32165312820422	5.26574349396165	5.70369326024581	5.08040552781416	2.24044915877692	4.05864990066165e-07	2.45252099443903e-05
Merged-chr11-80208560-2	chr11	80208060	80209060	+	718.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-495.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	3.5251742355304	3.16467620310485	3.24438513744358	3.3846369082535	3.12738948450053	3.07120254607321	-0.48882474581049	0.460307218805852	0.814434869915739
Merged-chr1-91250222-4	chr1	91249713	91250713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-91.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	8.21583293938504	8.05896837430204	8.1204165438253	8.0323121157697	7.82248610430272	7.73212900307925	-0.372552646810431	0.0923143268359899	0.404737931465454
Merged-chr10-59224118-4	chr10	59223594	59224594	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	2172.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	5.92963559788972	6.22122414154378	6.01513715831267	6.9316600963121	6.74598180423081	6.46033224477063	1.08801223153803	0.000218479862102699	0.00538166736703414
Merged-chr1-88235241-3	chr1	88234741	88235741	+	846.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 10 of 42)	exon (NM_001281466, exon 10 of 42)	8221.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.28996915766765	3.30396727671742	3.63546161353572	3.40100314468975	3.65323658422647	3.9817196596474	1.00186935789208	0.105907009748455	0.434427294799758
Merged-chr17-33780719-4	chr17	33780214	33781214	+	946.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020581, intron 2 of 6)	intron (NM_020581, intron 2 of 6)	861.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	6.38786825234714	6.54864976919297	6.10173118322657	5.11705760402791	5.14220039931099	5.91769526353622	-1.65548892699887	1.55426239196125e-05	0.000586251428423896
Merged-chr14-54382819-4	chr14	54382304	54383304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21963.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	8.66223874743989	8.76430125050885	8.32781639201625	8.3099052880092	8.62196396468855	7.5863609791474	-0.482144244019319	0.120227758267895	0.463702820804366
Merged-chr11-49062207-2	chr11	49061707	49062707	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145164, intron 1 of 1)	Lx2B2|LINE|L1	2005.0	NM_001145164	100039796.0	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	TGTP	T cell specific GTPase 2	protein-coding	4.58298994890381	4.45384992039991	4.4605546669727	4.79379563288723	4.77763977109524	4.88514799118751	0.742628670103093	0.0683192228294972	0.341854945769246
Merged-chr13-74167079-3	chr13	74166640	74167640	+	840.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41560.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	3.3224402201814	3.13705787098746	3.15634072185024	2.9139716411775	2.91865000932739	2.98989626313361	-1.25198144650662	0.0639401628557174	0.329514001665957
Merged-chr9-57521666-3	chr9	57521177	57522177	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007747, intron 1 of 4)	CpG	445.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	8.31821639080688	8.62007815743254	8.29907379823282	8.48553454568811	8.79956467457111	8.2649550487231	0.164299168090853	0.503997498316439	0.837420592739604
Merged-chr12-76614176-2	chr12	76613676	76614676	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013675, intron 15 of 35)	B4A|SINE|B4	-66251.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.75303975047034	3.6357267027626	3.80264271602251	3.71600549426924	3.59963523478478	3.72027927998961	-0.17800844878558	0.740919748022221	0.934712654423072
Merged-chr2-129614973-1	chr2	129614473	129615473	+	619.5	f0_balb.idr	intron (NM_001177647, intron 2 of 5)	intron (NM_001177647, intron 2 of 5)	19511.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.98151230863963	3.98049786246285	4.15856213833297	4.0771418216734	4.13591699860283	4.47464405611897	0.55137765918994	0.260407158716028	0.657803047902843
Merged-chr14-31414314-2	chr14	31413814	31414814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3363.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.71875680731746	6.75514954653465	6.9606627517826	6.79316935181894	6.8942174613428	6.85193390400502	0.062133247730337	0.804829273211301	0.953651704501661
Merged-chr3-107334020-4	chr3	107333517	107334517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-728.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	8.73383972129204	9.07237036963646	8.5870595274784	8.84580859009574	9.11858219896936	8.39631962193382	0.0134309742214257	0.960378811156992	0.990380695859216
Merged-chr6-120179874-4	chr6	120179376	120180376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13947.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	7.44769619212661	7.30491213445836	7.43949014470811	7.530620615703	7.52553263691979	7.34552452467032	0.114643884653672	0.616663664150767	0.888421011873208
Merged-chr15-86203552-5	chr15	86203049	86204049	+	983.2666630000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10910.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.62334170199664	7.57645683133873	7.64044665598991	7.59137382135459	7.89756540361984	7.64160210429983	0.160781333536473	0.482634588341035	0.825747658710697
Merged-chr11-121747166-4	chr11	121746667	121747667	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44740.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	7.0546849690749	7.21540188450346	7.42489355202818	7.34507421445076	7.59410751568991	7.52170529659181	0.383553098491631	0.118547063163227	0.460013245893103
Merged-chr13-100860162-2	chr13	100859662	100860662	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-26735.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	3.28497139282706	2.97481430074406	3.2772088200475	2.9778208223633	3.2973598594932	3.1199545389095	-0.174554672111845	0.797295401076345	0.951717269897722
Merged-chr12-84624876-2	chr12	84624376	84625376	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7410.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	4.32770061941233	4.40055074209263	4.32790988095172	4.47514879843444	3.87269948383048	4.11495719538171	-0.475757037863928	0.342066034841568	0.731142095278512
Merged-chr7-45570378-4	chr7	45569885	45570885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243052)	promoter-TSS (NM_001243052)	232.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	6.19668802624991	6.34588316764906	6.13648386726528	6.43804674950783	6.21869809242953	6.06084731268604	0.0320927328655608	0.912158880514731	0.980295639910637
Merged-chr11-79145527-2	chr11	79145027	79146027	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	946.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	5.84120194201055	5.51605301645125	5.82244222093259	6.00157182382281	6.06957986921036	5.85922111984049	0.455839260267706	0.146304072291474	0.510202082371576
Merged-chr11-51349829-4	chr11	51349335	51350335	+	912.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	59915.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	2.68495959304095	2.67448056145722	3.19291110565876	2.57784994123312	2.46105523491354	2.76593703756801	-1.41650766313	0.0831291122250802	0.381505377849687
Merged-chr1-120069351-2	chr1	120068851	120069851	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	4429.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.68249220234806	2.5756497323115	2.61380677073085	2.70135810086862	2.43841305425147	2.81065254745018	0.161706781068547	0.836344141210165	1
Merged-chr16-93091062-4	chr16	93090565	93091565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	262124.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	4.17341824616315	4.03061029593089	3.96979211221391	4.30383026318218	4.25070860257787	3.70253777400211	0.165599075726961	0.759162328940053	0.940311236380535
Merged-chr1-182506746-3	chr1	182506253	182507253	+	920.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	10857.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.03415452516378	3.1723526423328	3.39879932957311	2.78572537555077	2.80719052679055	3.09481067922422	-1.44786158755643	0.044304387290819	0.265004633577346
Merged-chr11-115641361-4	chr11	115640843	115641843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13048.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	7.21036051009743	6.69460736979036	6.3494627466322	6.8054718423032	6.87987430774217	6.77399249331847	0.0125572598301906	0.968254095048728	0.992742019778661
Merged-chr2-3429213-2	chr2	3428713	3429713	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	5082.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	4.78244557073878	4.93563042936857	4.69132342584227	5.07603754089542	5.11635079126796	4.71677838509575	0.394002460578432	0.326950123172946	0.719267796022909
Merged-chr1-106714394-4	chr1	106713891	106714891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177410)	promoter-TSS (NM_177410)	-101.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	5.76316716454905	5.4064733384222	5.22735246455892	5.45938525871156	5.19761438964542	5.11449408211454	-0.442225994849758	0.23707790659854	0.633466441419714
Merged-chr2-102948297-2	chr2	102947797	102948797	+	635.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46632.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.36158804437544	4.88141484746801	4.91247182361471	4.77961066170164	4.38340205402047	4.5284807644389	-1.14650635777816	0.00838961592058497	0.089041219581637
Merged-chr15-67514248-4	chr15	67513747	67514747	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287478.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.9191984310579	6.12408038420732	5.97149019293341	5.99397803913513	6.29085270463932	6.10093972600612	0.22357247389682	0.452343614832721	0.809370729412253
Merged-chr2-166180360-2	chr2	166179860	166180860	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24677.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	7.49241757795655	7.68183583464397	7.4826201615201	7.55135953723772	7.86834003096146	7.46633688357236	0.132041394813616	0.588984674402827	0.876716948268319
Merged-chr8-117158525-4	chr8	117158024	117159024	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081151, intron 1 of 10)	CpG	389.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	6.25456850221117	6.28238345693246	6.18297737886532	6.23704963819678	6.04961534244363	5.60610674395859	-0.406193654768493	0.202718311974119	0.592600664092976
Merged-chr9-123933342-2	chr9	123932842	123933842	+	570.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35350.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.01601103378255	5.96206842235077	6.38934929082009	5.8532253203172	5.83961197191246	6.12867769148522	-0.323063184648106	0.305422235899897	0.701557468278683
Merged-chr9-103337157-4	chr9	103336657	103337657	+	966.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176979, intron 19 of 27)	intron (NM_176979, intron 19 of 27)	27822.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	4.28277163316614	4.26368380107371	4.23869542981826	4.48104599521174	4.55174557269661	4.52702316707044	0.666979127521332	0.12540504915856	0.473876111606682
Merged-chr10-58529483-4	chr10	58528963	58529963	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 10 of 15)	MTD|LTR|ERVL-MaLR	31526.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	5.60468451802353	5.89172745124907	5.34993425980219	6.41705679141891	6.49756288488283	6.34060274326114	1.32266341692113	4.47648258857044e-05	0.00144092519624669
Merged-chr6-90370402-2	chr6	90369902	90370902	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_030260, exon 1 of 6)	exon (NM_030260, exon 1 of 6)	908.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	4.84546066378451	4.66758742542732	4.69603982106245	4.70570610173375	4.42268516554669	4.46847761482627	-0.486908524275015	0.246855452892186	0.643986348521616
Merged-chr4-155566146-2	chr4	155565646	155566646	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	B3|SINE|B2	2331.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	2.6989098149052	2.4805915411394	2.73975709964382	2.98687037316919	2.87430357021647	2.93688833225518	1.56318958476365	0.0407595928408588	0.251802227418678
Merged-chr5-121396925-2	chr5	121396388	121397388	+	739.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-1094.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	4.45607423015595	4.36680744945185	4.71587471621304	4.56227741250742	4.22406384140206	4.28944003798056	-0.372752244792743	0.415507934439182	0.786473510786138
Merged-chr12-91711073-2	chr12	91710573	91711573	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	75363.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.01492184536996	7.25087669897036	7.06068168614891	6.9780234648343	7.29639659088094	6.99730473590524	-0.0124856964336781	0.96104281301327	0.990394718798249
Merged-chr7-25317468-2	chr7	25316968	25317968	+	959.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001160400, exon 1 of 41)	5' UTR (NM_001160400, exon 1 of 41)	304.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	3.77869514820024	3.80641055730894	4.17898296473715	3.82250155401473	3.67503971262831	3.88605216412869	-0.418019089908342	0.436942388336091	0.799707503875008
Merged-chr12-102439829-4	chr12	102439317	102440317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-4.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.1661378933803	8.09820886628265	8.07176875485277	8.08857887711522	8.32049159712191	7.86529321428416	-0.000181086496382124	0.999372457101592	0.999920050950963
Merged-chr17-74338698-4	chr17	74338162	74339162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162870)	promoter-TSS (NM_001162870)	-325.0	NM_001357738	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	6.63120934032895	5.9705229346581	5.75654112164384	6.63876944604495	5.9641256275743	6.05531136170818	0.12059673200433	0.756901664806312	0.939748351653247
Merged-chr19-34565356-2	chr19	34564866	34565866	+	795.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	(TC)n|Simple_repeat|Simple_repeat	14278.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	3.18899097184249	3.33359670148034	3.49109539137054	3.41081868386114	3.7420653942206	3.81200493027955	1.205194521354	0.0477318176993836	0.276739308053052
Merged-chr3-86758795-3	chr3	86758292	86759292	+	804.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077688, intron 53 of 54)	intron (NM_001077688, intron 53 of 54)	162092.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	5.81869396217999	6.20806677874724	5.5127801759841	5.66687303927423	5.86960009516008	5.27229285640728	-0.448693818975966	0.240068376617396	0.637057344576547
Merged-chr10-34195061-4	chr10	34194555	34195555	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12496.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.44750532620245	6.59528578145497	6.24641286466029	6.40211578797118	6.62147122781402	6.60654360601901	0.161564571820374	0.560811715200463	0.865302277080554
Merged-chr11-83058096-3	chr11	83057595	83058595	+	861.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7017.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	4.64478072623633	4.33859646810987	4.57602036426773	4.73022165821622	4.86764777553988	4.64307758425392	0.55716181790131	0.186674358783323	0.571352903907996
Merged-chr2-170317983-2	chr2	170317483	170318483	+	699.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38378.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.51167429521789	3.5191692965313	3.46797792985313	3.4308954260065	3.27666866638732	3.59162679731077	-0.264159959527095	0.653778711967053	0.903558101607058
Merged-chr10-120191373-1	chr10	120190873	120191873	+	731.25	f0_c57.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	10224.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	2.64324806640674	2.68874728804291	2.6389251410189	3.05959506177932	3.13318940489657	3.36852741742232	2.81711894211056	0.000443697460029346	0.00956472067337451
Merged-chr8-84687021-6	chr8	84686510	84687510	+	876.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	852.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	5.77312644473301	5.7177272006227	6.06294156065062	5.93420955957112	5.87025746046075	6.20384459008072	0.267515243568749	0.39673441104811	0.773734965167923
Merged-chr15-6501045-4	chr15	6500570	6501570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55737.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	4.43262964243874	4.60177605375876	4.33538407243242	4.47031084957171	4.53973574944518	4.40393761352312	0.021284513942248	0.961067356046923	0.990407745091864
Merged-chr7-19716508-1	chr7	19716008	19717008	+	640.666687	f0_c57.idr	TTS (NM_008990)	TTS (NM_008990)	-1079.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	6.56741091515893	6.06227454752683	6.00746991840849	6.30053315755832	6.05107435297886	6.20344212163336	-0.103308851966661	0.746442717218025	0.936300236930265
Merged-chr1-148920530-1	chr1	148920030	148921030	+	1000.0	f0_balb.idr	Intergenic	Intergenic	1001909.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.54008736780133	2.56140518242735	2.65693801346683	2.43429100464456	2.45468636329341	2.60740536791336	-0.520559486700179	0.505536925782523	1
Merged-chr17-12858183-2	chr17	12857683	12858683	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008552, intron 3 of 8)	B3|SINE|B2	9960.0	NM_008552	17171.0	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|MasR|Mgra	MAS1 oncogene	protein-coding	1.81195476082253	1.90368057658447	1.7927142559205	2.02097340569195	1.87130588050347	2.26187521203108	1.87835606283905	0.072135709748558	1
Merged-chr8-71294202-4	chr8	71293685	71294685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	21471.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.79391050279861	7.03373272411789	6.91371304862158	7.27011234102588	7.46844012913674	6.94299891791083	0.510222612408976	0.0563536179196629	0.306040507448238
Merged-chr11-19955874-4	chr11	19955367	19956367	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	B4|SINE|B4	31425.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	5.22575289922427	5.32358414693941	5.27768174543352	5.04710707142473	4.8900223971378	5.21577588993911	-0.479877798978202	0.185711957123751	0.569987977664253
Merged-chr4-141872247-4	chr4	141871738	141872738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2682.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	7.77434653951844	8.02137391798153	7.8904338605766	8.1564078111818	8.377696637024	8.19852284801384	0.495625384581911	0.0243374497173809	0.183696527220957
Merged-chr8-69808855-8	chr8	69808367	69809367	+	993.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198101, intron 1 of 20)	intron (NM_198101, intron 1 of 20)	180.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	6.31821027325797	6.59830944569095	6.72356933847868	6.36875584126004	6.44985240062447	6.31784025522668	-0.269924740250679	0.335995830068255	0.726090328603253
Merged-chr2-126673561-4	chr2	126673050	126674050	+	865.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1802.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	5.8274864415101	5.71107880981017	5.15005725356054	5.20699304271491	5.53257429430585	5.4510242741279	-0.381260405276883	0.313699259251909	0.708132564679568
Merged-chr5-99342662-4	chr5	99342164	99343164	+	946.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	ORR1B1|LTR|ERVL-MaLR	-89737.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.83971710541549	5.62905795302747	6.1822798946079	5.93362089619344	6.26350884086707	5.70567555742835	0.188279835758397	0.588707720817774	0.876650937479947
Merged-chr7-16816277-4	chr7	16815767	16816767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133789, exon 1 of 18)	5' UTR (NM_133789, exon 1 of 18)	378.0	NM_001039878	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	6.07092538428752	6.05736887140396	6.55505140159936	6.06027063271902	5.7140251382513	6.27193890899716	-0.364956624698852	0.279657746918404	0.677333692015015
Merged-chr15-80035054-4	chr15	80034562	80035562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20254.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	7.05711039551916	6.93409052196402	7.18220949841291	6.71567660458624	6.99960689762176	7.1208486808361	-0.157652906158681	0.544575444307779	0.857827718417388
Merged-chr5-139380956-1	chr5	139380456	139381456	+	1000.0	f0_c57.idr	TTS (NR_033147)	TTS (NR_033147)	317.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	8.73753190732605	8.79095508143824	8.24863863132669	8.38025850718106	8.69051186436203	8.0688912989616	-0.287427973590916	0.288040880878279	0.685406818122851
Merged-chr9-92250575-4	chr9	92250028	92251028	+	993.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011636, intron 1 of 8)	CpG	334.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	6.31014759121923	6.73555519453863	6.11204308127559	5.43959488149383	5.4080958590647	5.0739009450008	-1.94170561698102	6.57350975420848e-08	4.89238461205885e-06
Merged-chr1-52765405-4	chr1	52764911	52765911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38053.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.99056829338784	5.98529449521995	6.24379693368082	5.79594037949603	5.74484636225001	5.63333905234983	-0.599572955610154	0.0502895799635769	0.285377846935096
Merged-chr4-56757466-4	chr4	56756974	56757974	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026079, intron 34 of 36)	intron (NM_026079, intron 34 of 36)	14052.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	4.08485216320369	4.07283837127366	4.15760281847001	5.43581719311515	5.45165744973387	5.02679687524772	2.97931748433553	2.86892419310126e-11	4.26281150463518e-09
Merged-chr2-154658068-4	chr2	154657556	154658556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	1030.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	8.81900567335653	8.87430225869843	8.41670315950695	8.54779787745983	8.94155586846138	8.58878016329727	-0.0199319849848613	0.934759912249443	0.985727536128156
Merged-chr14-79481142-5	chr14	79480659	79481659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-35.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	8.16221503828415	8.04130050891271	8.0759072851309	8.24673082655602	7.97239213367884	7.92283930727775	-0.0526202838620552	0.812663749362933	0.955699295706164
Merged-chr2-29788252-4	chr2	29787745	29788745	+	923.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	-574.0	NM_001290495	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	5.29145711520505	5.38085497930569	5.58898312492545	5.55439974423384	5.5163059159711	5.56977086720014	0.246951169099469	0.456725832226648	0.811822155193116
Merged-chr17-71598773-4	chr17	71598301	71599301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015549)	promoter-TSS (NR_015549)	-40.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	8.56072854119691	8.85418654066218	8.18345192168806	8.3481717024371	8.49078394139918	8.1034403706869	-0.333494046031452	0.200861384663402	0.590177367224668
Merged-chr15-76758583-3	chr15	76758085	76759085	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 2 of 10)	intron (NM_198420, intron 2 of 10)	-34740.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	4.15786672604646	3.79793372342859	3.78030855144689	3.75327515156127	3.62459071454259	3.74472770723278	-0.722537239501949	0.184286559758471	0.567896082682157
Merged-chr17-23807138-2	chr17	23806638	23807638	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 1 of 13)	CpG	3951.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	3.47006150411005	3.61930699079626	3.95995535707423	3.45132711373298	3.51331030970931	3.65000306021648	-0.532355462507251	0.363761199917524	0.74933829766087
Merged-chr8-79354755-2	chr8	79354255	79355255	+	800.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008539, intron 3 of 6)	intron (NM_008539, intron 3 of 6)	44713.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	2.36707562746547	2.47426697970656	2.36796583307215	2.72209640084068	2.42773875569789	2.70287873945569	1.28755615567973	0.11920806025463	1
Merged-chr2-39005110-4	chr2	39004589	39005589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	42.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	7.1656469403447	7.33286034312408	7.24526259007713	7.28596667370637	7.07636714016013	6.9687988352486	-0.194386315692655	0.426615691178189	0.793840707522572
Merged-chr2-11596834-4	chr2	11596311	11597311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152824, intron 3 of 11)	intron (NM_152824, intron 3 of 11)	6388.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	6.62638537670232	6.54432028676619	6.47476184476584	6.47880013700906	6.66442010446717	6.07026442323311	-0.174267161514048	0.557372436760171	0.864207623582794
Merged-chr16-55754594-4	chr16	55754091	55755091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67547.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.63909100079768	7.7780584276873	7.1883152636915	7.52485697992474	8.00633303106514	7.70827927980742	0.287184945371702	0.299120651794513	0.695929739249464
Merged-chr10-127744742-3	chr10	127744265	127745265	+	907.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5227.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	3.635906220262	3.79616776610982	3.61360936536698	3.85722699213517	3.99319701590518	3.94624713103911	0.787123772867173	0.13672464916194	0.493946882922312
Merged-chr17-74433454-2	chr17	74432954	74433954	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	intron (NM_001033367, intron 8 of 8)	25654.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	6.01483309528609	6.07473248494276	6.28081679047224	5.78086049128544	5.74290862769246	5.99326937872329	-0.500555503636059	0.0979367855679334	0.417291460898387
Merged-chr10-44632313-3	chr10	44631771	44632771	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-173523.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.93800118272553	8.05534402148299	7.84299123734826	7.88376636380229	7.98327216308294	7.66005628470622	-0.136096205908232	0.549004771390343	0.860131595139289
Merged-chr2-133494717-2	chr2	133494217	133495217	+	552.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57442.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.14323609356187	4.11637941819948	3.9122446599494	3.91385553470853	3.7840406712791	4.07960519764218	-0.436415798933357	0.389510025692112	0.769203119372908
Merged-chr8-84845925-5	chr8	84845322	84846322	+	880.453369	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007591, intron 3 of 8)	intron (NM_007591, intron 3 of 8)	1109.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	5.69209618160465	5.58467917105315	5.74291971477523	6.06650126066511	5.80621584045041	6.18664112375539	0.621211027768915	0.0485386302387614	0.279559932505493
Merged-chr10-94147011-2	chr10	94146444	94147444	+	679.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-987.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	3.15812876041728	3.16643591402797	3.30422176295321	3.05456140616765	3.42963400438852	3.42864558413551	0.44240820741825	0.49233300139648	0.83104217378051
Merged-chr9-105803600-2	chr9	105803111	105804111	+	772.0	f0_balb.idr|f1_balb.idr	intron (NM_001102607, intron 1 of 36)	ORR1E|LTR|ERVL-MaLR	6037.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	1.69464840493266	1.55964540236737	1.77699140650879	1.39998348432011	1.43055551924672	1.43353472048849	-3.35363276500108	0.0149588750135128	1
Merged-chr6-72132982-1	chr6	72132482	72133482	+	565.0	f0_balb.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-9785.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.49406093164488	4.4532123043455	5.19890806083793	4.95663386446146	4.89744888437078	5.17285091748852	0.57558499318879	0.206296188522533	0.596855755513016
Merged-chr17-12318807-4	chr17	12318311	12319311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	-15.0	NM_001357722	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	7.29676722611211	7.35355831376895	6.87633562636525	7.36161801293767	7.19963263917691	7.17086532149945	0.0657032619735458	0.800523050519411	0.952563996979043
Merged-chr9-55310366-4	chr9	55309850	55310850	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16563.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	6.30574719405882	6.52737243537804	6.24327286693569	5.54471519299167	5.46495606817964	5.75592122873996	-1.38282282067102	6.12809659116264e-06	0.000263422375134699
Merged-chr9-63605620-2	chr9	63605120	63606120	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	2974.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	4.91833978062433	4.3505308517862	4.68195367846931	4.95179714096267	4.85573026961786	4.66679135158002	0.369683343079337	0.398811445278778	0.775423220616012
Merged-chr2-90467164-2	chr2	90466664	90467664	+	661.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	MTB_Mm|LTR|ERVL-MaLR	12010.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.65732354671303	2.55051471111415	2.79780355875432	2.86075374765743	2.82227100893656	2.98862364281132	1.17680965894025	0.112348933592536	0.447687566666004
Merged-chr6-91740535-2	chr6	91740035	91741035	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 7 of 14)	intron (NM_009320, intron 7 of 14)	56468.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.18484458796023	5.03556479981691	4.76428272824579	4.70817426419882	4.52882723768992	5.01500047158665	-0.583673746241841	0.163993269441489	0.538031384105647
Merged-chr11-119927806-2	chr11	119927306	119928306	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 2)	B1_Mus2|SINE|Alu	13996.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	4.52078875410897	4.3755128675663	4.37115893828868	4.54311943621237	4.44643512450728	4.43897607726929	0.126974086063234	0.768456444147118	0.942871018290895
Merged-chr3-116424028-4	chr3	116423565	116424565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080818)	promoter-TSS (NM_001080818)	-33.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	6.2745951616865	6.18391608164183	6.32830068923318	6.34165920823446	6.25699578736782	6.42487829812252	0.128898019632679	0.637852851349971	0.8973803061326
Merged-chr5-38563052-1	chr5	38562552	38563552	+	614.0	f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1457.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	3.06572257177352	3.09460378482367	3.13812912781682	3.03154182536757	2.81449757476021	3.15304822749068	-0.452226683837088	0.506220090746983	0.838348406755321
Merged-chr16-32163230-2	chr16	32162730	32163730	+	948.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146069, exon 2 of 4)	5' UTR (NM_146069, exon 2 of 4)	2364.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	6.58973031741144	6.91361920093573	6.49661571274239	6.4637953782732	6.47133084203677	6.76987841745428	-0.189768040972119	0.504895737614776	0.837897934451231
Merged-chr10-54173781-2	chr10	54173281	54174281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	97859.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	2.93677988666565	2.86082669199669	2.78822616362892	2.95183112824053	3.26092578249824	3.22507864673998	1.33532865318955	0.0587756248530013	0.31372135433758
Merged-chr11-69672502-4	chr11	69672011	69673011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-88.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	8.29681214164279	7.8971959168241	7.75899082677045	7.92635717982921	8.00995282324627	7.94793408071304	-0.0698978180965502	0.775205681952271	0.944594834759211
Merged-chr10-121596752-4	chr10	121596180	121597180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-9886.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	7.05188873765086	6.7974005435642	6.90522797499718	7.07168264716377	7.09101904362985	6.90570472063064	0.16449703214046	0.509883841301434	0.840593094527851
Merged-chr17-17648943-4	chr17	17648425	17649425	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24436.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.02003048510373	3.20269555262278	3.33038026463598	2.8279792591403	2.91082648425252	2.88655857984917	-1.45723036444883	0.0387396688319833	0.244052874331592
Merged-chr8-106894326-2	chr8	106893826	106894826	+	545.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145412)	promoter-TSS (NM_145412)	686.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	6.30514409179506	6.33566058612655	5.84292924173236	6.42413450607191	6.23835984253428	5.87880444122708	0.0276735919026612	0.93284482341609	0.98531684549485
Merged-chr7-29491211-3	chr7	29490710	29491710	+	955.361084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	14250.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	3.35695611595558	3.17750239233225	3.51056798186106	3.49717783674751	3.3338253836372	3.82387039407722	0.77878883424625	0.212256296674782	0.604656850070705
Merged-chr9-90113121-4	chr9	90112649	90113649	+	923.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	1671.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	7.29178836839911	7.31407625774317	7.02874358365043	7.486923935834	7.88222040261424	7.54375832823324	0.633388747392328	0.0125252059545929	0.11778225790599
Merged-chr7-30323158-4	chr7	30322660	30323660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-785.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	7.72565878096375	8.01885497747242	7.80084877688913	7.19045961928395	7.29686968237104	7.04521338951944	-0.975760916959069	4.68288910581998e-05	0.00149349879922219
Merged-chr17-47612259-2	chr17	47611759	47612759	+	731.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016859)	promoter-TSS (NM_016859)	663.0	NM_020048	56771.0	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	5.84616893644913	6.02895069670783	6.13874379813748	6.2024877752475	6.22687020397728	5.8489058355093	0.190723989252285	0.53448434777276	0.853068627162717
Merged-chr1-93819331-1	chr1	93818831	93819831	+	556.0	f1_c57bl6.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-5909.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	3.50217274623592	3.72358358056151	4.16103626515533	3.34572642045851	3.4987293427375	3.74308339157172	-0.951921913909301	0.123340298049459	0.469934498836915
Merged-chr11-70674715-4	chr11	70674212	70675212	+	918.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_178116, exon 15 of 23)	exon (NM_178116, exon 15 of 23)	-5296.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	3.91457361604088	3.60029959187438	3.94537976802043	3.83153084617983	3.44818330435308	3.87135148247446	-0.331172516062766	0.563389656823764	0.865939139929528
Merged-chr14-103234378-1	chr14	103233878	103234878	+	744.0	f0_balb.idr	intron (NM_207215, intron 26 of 84)	L2a|LINE|L2	112422.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	3.13270230367264	3.40799705316747	3.34627056855084	3.1887904285362	3.36992190047493	3.4169744590632	0.108162933116844	0.862581802412826	0.968083292979043
Merged-chr9-105073190-1	chr9	105072690	105073690	+	1000.0	f0_balb.idr	intron (NM_053159, intron 7 of 9)	L1MC4|LINE|L1	19922.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	2.91005482406789	3.18290401501157	3.26046708566102	2.90148584637482	2.84862141866481	3.27779533925632	-0.474288382141038	0.505302377004848	0.838055364884185
Merged-chr13-35741305-4	chr13	35740810	35741810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-92.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.76416341035479	5.3907505405526	5.49095616312183	5.96571745747138	5.1652495339365	5.26662764992036	-0.0714128753340726	0.859930315224089	0.967441103100897
Merged-chr1-131431630-4	chr1	131431126	131432126	+	775.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95735.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	6.5158629476087	6.45002283086553	6.25092141891638	6.01587473170415	6.25761607370899	6.33099006587128	-0.349534378906508	0.221612885046832	0.616411998628675
Merged-chr16-30071282-2	chr16	30070782	30071782	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	5925.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	2.78657686643106	2.97890870926632	3.1216646912274	2.86714983906305	2.78534596230199	2.84376767886358	-0.656558835451639	0.356482182940153	0.743309425646156
Merged-chr13-105294298-4	chr13	105293713	105294713	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 1 of 7)	CpG	272.0	NM_001360890	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	7.00415537759034	6.86607838804134	6.89369299027886	6.83894146082289	6.56105489353438	6.80613323765119	-0.294265222688631	0.251209880440147	0.648731936769727
Merged-chr12-91592316-4	chr12	91591803	91592803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1816.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	5.65977567350822	5.53989563487661	5.58829273323076	5.46837672283992	5.56537937226168	5.38517907802673	-0.216356534743989	0.505788764396815	0.838177729332582
Merged-chr1-31034132-4	chr1	31033627	31034627	+	914.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_136907, intron 2 of 3)	intron (NR_136907, intron 2 of 3)	62327.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	2.58803571245227	2.8392653057064	2.95710754217184	3.07707081869825	2.83678362386574	3.0875412329466	0.984765941478626	0.185675869537515	0.569911016727934
Merged-chr3-69060852-2	chr3	69060352	69061352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16110.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	2.43688236343694	2.36824845604827	2.68277613987766	2.45039661995631	2.50411864695924	2.57385790241795	0.0718807216578837	0.928621475982802	1
Merged-chr6-115901257-4	chr6	115900741	115901741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30686.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	5.35173589131564	5.07559815985556	5.03678491154702	5.1809754948676	5.00663013552712	4.83373313487175	-0.30918074880106	0.419105459436328	0.788801788481746
Merged-chr11-68691318-1	chr11	68690818	68691818	+	1000.0	f0_balb.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-597.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	6.34007692696252	6.56706553104901	6.09598155991286	6.24393673431393	6.28882132011326	5.91146238877305	-0.314533981577345	0.308709209694535	0.704643548588986
Merged-chr16-21639898-2	chr16	21639398	21640398	+	757.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	54767.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	5.95606640532447	5.65796662104458	5.97869398178129	5.77330495784122	6.04463771872488	5.90000767331352	0.0878443971468489	0.780365054144587	0.945998237130197
Merged-chr2-3659698-3	chr2	3659180	3660180	+	637.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53778.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.93627504569668	4.64521800217624	5.14036007035623	4.54833373931738	4.97304130215185	5.26254300578662	0.0853546483122545	0.84720474209182	0.964181639106262
Merged-chr6-114893993-4	chr6	114893507	114894507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27814.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	8.14494229972553	8.40514179702086	7.90780918698694	8.13327091644736	8.35036842088802	7.65722320450782	-0.121281352935181	0.66120795778778	0.906299831450979
Merged-chr17-28692092-4	chr17	28691614	28692614	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	-454.0	NM_001168513	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	7.11581850456227	7.1921301562393	7.14845850397014	6.9529290422554	7.17940630947335	7.02635940776529	-0.137874062630321	0.565786787423821	0.86688237163883
Merged-chr10-81520227-4	chr10	81519736	81520736	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	3989.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	4.96785680745817	5.16039043558723	5.44341768249899	5.35137435374723	5.13709148701929	5.47802241246863	0.255697653451261	0.495477805923964	0.832500902975543
Merged-chr9-53703212-4	chr9	53702721	53703721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175562, intron 1 of 1)	PB1D10|SINE|Alu	3011.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.4387521803786	6.58610792305461	6.5746676694847	6.80364219481798	7.07828372214587	6.59918296886874	0.505301893005716	0.0666802702374692	0.337428202026354
Merged-chr5-134455629-4	chr5	134455135	134456135	+	949.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	627.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	6.11153819493163	6.20417113824166	6.11033230411202	6.61424437749743	6.50085228349833	6.1027466964087	0.479667749855288	0.104392337123657	0.431059381042392
Merged-chr1-107402295-4	chr1	107401790	107402790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20399.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	4.08897223172174	4.53738847207151	4.64190269603538	4.65534071480514	4.61468233755183	4.74505976978541	0.565978205093044	0.214566163376485	0.607679418728065
Merged-chr14-36863686-2	chr14	36863186	36864186	+	596.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55849.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.3880623456225	4.70127796412126	4.3299288968446	4.29326946363774	4.10323903344768	4.10976377166563	-0.847782427358637	0.0709713530434771	0.349456291841498
Merged-chr7-81860759-4	chr7	81860249	81861249	+	965.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1748.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.30037984237787	7.25024538097659	7.11812275221616	6.89265079961546	6.76207914239276	7.18796139680265	-0.423930024005628	0.0984768469870015	0.418427687285513
Merged-chr5-45856171-4	chr5	45855664	45856664	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	388.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	6.48548009031356	6.54368287836658	6.19154833406562	6.56937012431225	6.52515782664206	6.13907895359495	0.0168073307988883	0.954695676999297	0.989617250984245
Merged-chr11-118222552-4	chr11	118222051	118223051	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9809.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.30311463148243	6.12361316890163	6.19981549175611	5.98326214080597	6.2072925755084	6.29964041589916	-0.0742479152419323	0.79712394380996	0.95167643470176
Merged-chr3-81150016-2	chr3	81149516	81150516	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	113600.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.44486113738044	3.23450700795575	3.14651153090451	3.10783225006424	3.01414785594607	3.27723294107729	-0.654868871806845	0.316472310372243	0.710557877168509
Merged-chr3-96661681-4	chr3	96661195	96662195	+	765.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-8436.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	4.25897396588815	4.04028216962241	3.9621020741872	3.7196082453496	3.88529666914116	4.07935725933266	-0.600725044007973	0.245088075012429	0.642381314494918
Merged-chr7-46825182-3	chr7	46824666	46825666	+	714.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-20638.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	2.25519769690957	2.32884393027115	2.24792123713224	2.38700649426535	2.42150967595541	2.57709444616878	1.20008305491423	0.154622429659597	1
Merged-chr15-98089553-4	chr15	98089057	98090057	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144851, intron 1 of 17)	intron (NM_144851, intron 1 of 17)	-3032.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	6.03372867192379	6.35973473624509	6.39533749387721	6.44433826716003	6.62000359528402	6.64289795446052	0.494249530075492	0.0810749825110937	0.376750091856533
Merged-chr15-43259540-2	chr15	43259040	43260040	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008388, intron 10 of 12)	intron (NM_008388, intron 10 of 12)	23196.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	2.31170458860092	2.41706585623398	2.37743711053056	2.44563400190541	2.50293744247252	2.57939667210959	0.869068183509722	0.282532615726409	1
Merged-chr5-120519369-2	chr5	120518869	120519869	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	8177.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	5.20345391746065	4.47277530943007	4.5927666980739	4.64277481224588	4.43439263376538	4.61838370089276	-0.564699535984546	0.228069965208275	0.623077135802944
Merged-chr11-85250511-4	chr11	85249991	85250991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	15325.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	5.59076835630571	5.76979684932082	6.21142871156336	5.56442337916109	5.54049774240843	6.03710126400876	-0.268966382255033	0.460263276562062	0.81439175596853
Merged-chr17-65883749-2	chr17	65883267	65884267	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009067, intron 1 of 9)	intron (NM_009067, intron 1 of 9)	1156.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	3.5228157224454	3.66661664097007	3.98906901871956	3.93975967880548	3.8939352135744	3.96427508638659	0.643191407280662	0.236093031079777	0.632437001255673
Merged-chr1-91022990-2	chr1	91022490	91023490	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	24263.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.39203269545429	3.48603324287194	3.34413989001387	3.60298576397629	3.36368435929123	3.5278276236663	0.32251773545339	0.584310254947507	0.874561879083458
Merged-chr10-77531912-4	chr10	77531406	77532406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	1558.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	7.12541755209512	6.94145947824967	6.93649260783546	7.39831003216737	7.43880072150752	6.95108771960036	0.42753595360164	0.105050826568837	0.432406256520669
Merged-chr15-74920838-4	chr15	74920353	74921353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34198.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	5.69950800676933	5.48326685306903	5.96892150102956	6.78598707093617	6.97177937316143	6.4692435959475	1.75598366280194	1.78562800070781e-08	1.5270147449424e-06
Merged-chr1-135741514-2	chr1	135741014	135742014	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153810, intron 2 of 3)	intron (NR_153810, intron 2 of 3)	12347.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	3.13663964744225	2.82728063258139	2.96963836886066	3.26721896611775	3.27169101107651	3.39219650936748	1.41665620169698	0.0376293894105764	0.23983655565494
Merged-chr4-41377800-4	chr4	41377298	41378298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355509, intron 3 of 5)	intron (NM_001355509, intron 3 of 5)	25835.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.27784538844341	6.42562847231598	6.57839864821176	6.22429072456146	6.09210483798231	6.13249784405457	-0.459862829412916	0.10225945198923	0.42642099233837
Merged-chr18-9495166-4	chr18	9494678	9495678	+	999.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-45024.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.74967793748059	4.95782575742934	3.97756224975915	4.54157812671087	4.28957587800064	4.41985872914181	-0.515597870893954	0.337813510188192	0.72769978571614
Merged-chr9-107976210-2	chr9	107975710	107976710	+	673.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 3 of 23)	intron (NM_023738, intron 3 of 23)	643.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	6.15074933100373	5.98656443666206	5.66342489387015	6.32707439503421	6.31795242533866	6.11293489893244	0.507290909521825	0.101489624981109	0.424935777961461
Merged-chr15-38672136-2	chr15	38671636	38672636	+	851.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 1 of 12)	ID_B1|SINE|B4	10232.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.86934482623009	5.00851326689288	4.56304650399017	4.83827008612623	4.60204632298043	5.05115940184137	-0.0106984524961622	0.979967512529322	0.995416130723271
Merged-chr4-136180161-4	chr4	136179651	136180651	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-631.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.63346394100573	4.77411709836956	4.64120361154392	4.42515933550832	4.02627227543736	4.41777584284405	-1.00309423355868	0.0272935286893755	0.196816893054317
Merged-chr8-79492047-1	chr8	79491547	79492547	+	898.0	f0_balb.idr	Intergenic	Intergenic	-92579.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	2.77469860747358	2.93232153829296	3.01862336558381	2.81916950256044	2.68477582965409	2.79362018391585	-0.739348743762199	0.305371032250404	0.70154336825049
Merged-chr5-88720843-4	chr5	88720327	88721327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026735)	promoter-TSS (NM_026735)	-44.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	7.51871549674197	7.5839321174375	7.48755445542135	7.58356344074592	7.51174449455399	7.58377162711681	0.0371628231854977	0.865603979343577	0.968641478520565
Merged-chr8-126696599-4	chr8	126696096	126697096	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103160.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.6910023049521	3.57459234964548	3.76867973376988	3.86574776579279	3.71463772189203	3.73562584589143	0.325389617748575	0.544072568700076	0.857551302506722
Merged-chr18-34934125-2	chr18	34933625	34934625	+	655.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-2122.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	3.4513324411312	3.14778639421619	3.61769170906935	3.15820916716477	3.11228709637042	3.15018026286633	-1.12644735075783	0.0854058117948392	0.386850668907184
Merged-chr11-97998114-2	chr11	97997614	97998614	+	816.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1941.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	4.6169531120703	4.52626548804093	4.49935458823105	5.08866162129163	5.1110625646925	4.93458526561138	1.13837344229597	0.00390975088358136	0.0510630280208817
Merged-chr10-130231631-4	chr10	130231114	130232114	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20486.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	3.29065072131522	3.54909052202383	3.70226261800324	3.28539690939462	3.30686631432728	3.52140141940117	-0.561900938279236	0.358930768233354	0.74519810754794
Merged-chr8-72216044-4	chr8	72215506	72216506	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3169.0	NM_001080812	234421.0	Mm.211247	NM_001080812	ENSMUSG00000074240	Cib3	C730014M21Rik|Gm1107|KIP3	calcium and integrin binding family member 3	protein-coding	3.06387595524619	2.83363541557744	3.23265521408814	3.01155080491532	2.83924775459624	2.83673132727169	-0.703701355383747	0.32408589289315	0.717287790132387
Merged-chr3-87521380-4	chr3	87520875	87521875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4203.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	7.43335681033119	7.31589400267259	7.09932706458936	6.64775700714055	6.5665018510467	6.72814170059369	-1.00134623543136	6.96003196636448e-05	0.00207944831633603
Merged-chr16-90316060-4	chr16	90315558	90316558	+	854.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31555.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	2.54356740628224	2.5731005815124	2.54444852649044	2.77843084406308	2.6072538215227	2.74467065962168	0.881095881598194	0.246644606929224	1
Merged-chr16-33944920-2	chr16	33944420	33945420	+	938.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 12 of 14)	intron (NM_001145884, intron 12 of 14)	22118.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.84907589014461	3.70527681067434	3.85892253615457	3.98295283466992	3.71335605050803	3.97659135069663	0.274586525100807	0.601319356967924	0.881933867638998
Merged-chr1-45922522-3	chr1	45922015	45923015	+	907.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016917, intron 2 of 7)	URR1B|DNA|hAT-Charlie	3079.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.10891400774952	7.69442016939661	7.24445326402708	7.78109812135634	7.9597469048579	6.8753568303393	0.363996417554656	0.293510809283006	0.690340231295885
Merged-chr2-31142016-4	chr2	31141522	31142522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177649)	promoter-TSS (NM_001177649)	-14.0	NM_001038700	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.66090480789219	6.6841851354786	6.47494058025432	6.61431062796097	6.51259684010081	6.7043595777399	-0.0165938404285232	0.949553881369508	0.988236286738052
Merged-chr7-28820368-2	chr7	28819847	28820847	+	597.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177301, intron 9 of 12)	intron (NM_177301, intron 9 of 12)	-4991.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	3.01823719206803	2.87259676010535	3.31879303800339	3.13325075143617	2.85288382123808	3.22947379549716	-0.00121390462652489	0.998630624583935	0.999766741353215
Merged-chr6-115375525-4	chr6	115375009	115376009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	13160.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.51141151946377	6.57747009574034	6.21827204064837	6.40040287509369	6.72383563505831	6.09589010081146	-0.00773303622900606	0.980297585310226	0.995500659055379
Merged-chr10-87832274-4	chr10	87831771	87832771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25994.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.15820163377781	7.14683240372184	7.11275375497889	7.2643621637803	7.81882049632834	7.18340060175155	0.485154799291203	0.0796368292596023	0.373195188533358
Merged-chr18-53881179-1	chr18	53880679	53881679	+	656.0	f0_balb.idr	intron (NM_152809, intron 1 of 12)	Tigger20a|DNA|TcMar-Tigger	19066.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.44660720926885	3.72708955860574	3.7823791691328	3.27639525395779	3.38788915434325	3.32349506815895	-1.20828956006826	0.0464351026404568	0.272691934540697
Merged-chr5-120512069-4	chr5	120511580	120512580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	888.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	8.23618960277311	8.38950008268874	8.16507282349355	8.38759973429318	8.60341433854378	8.26046199324066	0.224104972036583	0.311531165274851	0.706536150429674
Merged-chr5-113647929-3	chr5	113647468	113648468	+	943.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	B4|SINE|B4	2422.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	7.94246619920491	8.03240178174194	7.85937901559078	8.09566930242712	8.14503533863605	7.75186142317092	0.0953509574399198	0.679481121707829	0.913863725020095
Merged-chr2-167807072-2	chr2	167806572	167807572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	115895.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.35362603894093	4.13519948469316	3.94476264448917	4.33125862827476	3.83500970274796	4.06735341051037	-0.196882905574321	0.706493464897684	0.9229861083545
Merged-chr12-33216077-1	chr12	33215577	33216577	+	781.0	f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	68391.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	2.79459421764406	2.71407442604333	3.19595019788157	2.78327452647408	2.43816605836644	2.48821319206544	-1.82277969526677	0.0333783553307576	0.222961114688827
Merged-chr19-32112116-4	chr19	32111671	32112671	+	906.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9031.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	5.37853806456455	5.47731078354244	5.34322636355692	5.25738488914146	5.34331714662967	5.57885019108844	-0.0254792818289447	0.940635027454679	0.986881313555047
Merged-chr11-117964293-2	chr11	117963793	117964793	+	912.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5073.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	3.98594821659371	3.7797177629878	3.83544336807544	3.82900714706279	3.7147969909374	3.74945475123767	-0.345403955815139	0.50966153046302	0.840476252363464
Merged-chr18-65690823-7	chr18	65690330	65691330	+	994.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7438.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.86548421671718	8.09934920166938	7.86831182355098	7.79082141659778	8.05630817468296	7.71027617906945	-0.119750903919783	0.609674688758343	0.885308220347415
Merged-chr5-72554646-4	chr5	72554213	72555213	+	856.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	4932.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	4.99109449288586	5.29755699898722	5.51045313788662	5.27178709644326	5.65406788655402	5.57259057075931	0.465236500779242	0.210000201763468	0.60193932923403
Merged-chr9-41122910-4	chr9	41122397	41123397	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	MIR3|SINE|MIR	35165.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.57709676273017	5.86550425300534	5.74188009110726	5.53506047675138	5.5915940905998	5.50128406889739	-0.347997996292874	0.280750717460684	0.678846264691369
Merged-chr5-99364295-3	chr5	99363807	99364807	+	919.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111380.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.47216966513511	7.62395916542622	7.59170618443783	7.38394252622713	7.45938155192793	7.22115525341748	-0.290695607257435	0.207935609544149	0.598764749409937
Merged-chr18-53746408-2	chr18	53745862	53746862	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1815.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	5.34254707150587	4.77327971992117	4.91288580061541	3.66544695625105	3.36502087161576	3.98843509566366	-4.45703044827967	4.9415051119066e-11	7.04062940670418e-09
Merged-chr2-73160950-3	chr2	73160465	73161465	+	983.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030091, intron 4 of 7)	ORR1D2|LTR|ERVL-MaLR	53482.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	2.78323009050557	2.82617731959226	2.93461234004841	2.83679273300244	2.81689438392742	2.63171224613203	-0.394520835676691	0.590396812131133	0.877218317361274
Merged-chr18-58583279-2	chr18	58582776	58583776	+	567.5	f0_balb.idr|f1_balb.idr	intron (NM_001081072, intron 4 of 9)	intron (NM_001081072, intron 4 of 9)	27036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.43367642072433	4.39429648692035	4.85670638126653	4.10656127753105	3.78526091419405	4.19227368147275	-1.47269941986543	0.00352728005714693	0.0474301743689531
Merged-chr4-137818547-4	chr4	137818045	137819045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22161.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	4.57850199061268	4.26861101288652	4.1140336580712	4.15790412394702	4.09292054588296	4.03146593778485	-0.676442131887032	0.165125686856906	0.539852192526402
Merged-chr18-14784690-2	chr18	14784183	14785183	+	983.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 1 of 14)	intron (NM_001100449, intron 1 of 14)	1438.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	3.39163208227437	3.14496923137192	3.4160555593064	3.39392536545478	3.23013943650157	3.01223708607828	-0.384765096917143	0.56064641027307	0.865261302076164
Merged-chr6-51567824-4	chr6	51567322	51568322	+	776.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22529.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.54957287697586	3.62389594891528	3.23085064075288	3.33031382602125	3.14896911981289	3.4193343170376	-0.744760505430948	0.240604385211874	0.637667527223519
Merged-chr8-68205588-3	chr8	68205086	68206086	+	577.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70942.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.57430032692568	5.51256530168647	5.2798630968226	5.44267645950366	5.67607739859977	5.64366003630733	0.229730949993916	0.4939376450386	0.831755865067393
Merged-chr9-119403135-3	chr9	119402624	119403624	+	818.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007397, intron 1 of 9)	CpG	946.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	4.38435296153055	4.29756605754317	4.18270417401405	4.67556226645496	4.22982487384863	4.52169723738857	0.483199180119043	0.298676361182875	0.695427199902635
Merged-chr8-11038525-4	chr8	11038020	11039020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30090.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	6.52985136859843	6.37841627563874	6.13079356123452	5.7627927250744	5.69635156407394	5.40263339969838	-1.2542213715722	8.82713507109901e-05	0.00255563067152403
Merged-chr14-32201944-4	chr14	32201436	32202436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016897)	promoter-TSS (NM_016897)	-35.0	NM_001359915	26430.0	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	7.23130924667745	7.63511012865456	7.62163894490617	7.40268181116437	7.28444703088296	7.31623890301473	-0.253672197130859	0.305844213030311	0.701935878577467
Merged-chr6-56832112-4	chr6	56831601	56832601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012056)	promoter-TSS (NM_012056)	42.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	5.79790044761693	5.46685897192136	5.33590148675714	5.25006112649372	4.65292721704648	4.77211822833724	-1.28918527823465	0.00172754257574326	0.0276220912072339
Merged-chr9-113729161-4	chr9	113728650	113729650	+	835.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12323.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	2.72072649493697	2.77655178992727	2.94897781484542	2.89104703250909	2.53811598412578	3.02119045346343	0.0627711243659143	0.934809778884118	0.985727536128156
Merged-chr16-4935455-2	chr16	4934955	4935955	+	585.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037666, exon 3 of 3)	non-coding (NR_037666, exon 3 of 3)	-3656.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	2.96203756963644	3.08482291694929	3.51804924740349	3.22652658967129	2.87045668652301	3.4892370061308	0.0445695656968871	0.951373145518304	0.98878162243676
Merged-chr5-3212952-3	chr5	3212459	3213459	+	641.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130934.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.89351520842752	3.92341119165669	4.59166897829978	4.00831667346787	3.93863047389607	4.14602874930947	-0.389147632778576	0.474995065739875	0.821727753368561
Merged-chr4-126083990-3	chr4	126083443	126084443	+	929.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 6 of 9)	ID_B1|SINE|B4	-12710.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	4.03284959081806	3.68265065708723	3.93435865500592	4.57812471140734	4.45856387722856	4.389091544136	1.66107374870036	0.00081153560731416	0.0153364194443326
Merged-chr10-77960545-2	chr10	77960045	77961045	+	711.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	9327.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	3.6100045015837	3.80525885686718	3.76088321011229	3.92390265516251	3.87430236375152	4.1560767144459	0.818549442091493	0.121285799028208	0.465732094953117
Merged-chr11-3663606-4	chr11	3663095	3664095	+	719.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159288, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	4895.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	5.2193499194243	5.15459725698825	5.74801159545035	5.34594379730471	5.10072151382252	5.61642909710267	-0.0562222498086795	0.88690583770583	0.973794308941933
Merged-chr8-124229429-2	chr8	124228933	124229933	+	714.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1961.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.9975204451956	4.72000075907059	5.32712886465311	5.68230450946945	5.71070087610016	5.76765093212045	1.37733925586033	0.000186608272010893	0.00472960740099982
Merged-chr19-55588953-2	chr19	55588453	55589453	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	113251.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.52564593301032	3.30544870098224	3.63138581447233	3.39121249704126	3.23812285259362	3.38502905684264	-0.587515744249828	0.332559685095289	0.723654123936882
Merged-chr2-38602899-3	chr2	38602370	38603370	+	810.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41036.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	3.9647005114383	4.14472286501494	4.40869740169899	4.11421893938483	4.25075075435566	4.26572086046384	0.100994780314147	0.834855382756353	0.96138272464184
Merged-chr16-36530795-4	chr16	36530273	36531273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	31361.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	5.53290015211823	5.23956462296035	4.94243697355624	5.15367931739597	4.93123195585776	4.84901841501196	-0.590124081553908	0.137869155587965	0.496296223517512
Merged-chr7-100952867-4	chr7	100952386	100953386	+	861.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	11480.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.42064652869606	6.60543379738067	6.62774968878361	6.52283162914462	6.23396210891573	6.96973319831875	0.0758546121055344	0.807952607851293	0.954583809755663
Merged-chr18-88771208-3	chr18	88770761	88771761	+	934.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122946.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.46506849594552	4.86975682679505	4.15544321930632	4.32204300069047	4.2323005520892	4.46182018052825	-0.519198443941661	0.288510623118034	0.685936108589217
Merged-chr11-75166685-2	chr11	75166185	75167185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	1467.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	2.52923839112941	2.57585770245558	2.79167336074252	2.97933725246141	2.7138226483194	3.0412216282245	1.50835270315847	0.0502795040902545	0.285358738448019
Merged-chr3-116290318-4	chr3	116289809	116290809	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-36825.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	4.79099145499741	4.50295124550381	4.90046555396967	4.62575383605212	4.79982333509882	4.44890028859234	-0.213192855426232	0.62301922679708	0.891251075175817
Merged-chr10-13301236-4	chr10	13300743	13301743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23046.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	7.6950151427256	7.57875843789326	7.38444817154985	7.5938835523153	7.95950033953788	7.47435453624009	0.20041407376537	0.432967684405511	0.79758551656855
Merged-chr5-36462975-4	chr5	36462446	36463446	+	920.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126490, intron 1 of 1)	intron (NR_126490, intron 1 of 1)	1908.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	2.83210086592475	2.60237400765066	2.88866862104763	2.7918979277323	2.79735377798127	2.58349609638393	-0.237158229886405	0.756289343823119	0.939545863427369
Merged-chr19-53387377-1	chr19	53386877	53387877	+	561.0	f1_balb.idr	intron (NM_172429, intron 2 of 5)	intron (NM_172429, intron 2 of 5)	2664.0	NM_001356986	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	2.64891577935044	2.76789381325045	2.84629348838897	2.76167079875068	2.71167589507598	2.85920958335989	0.113078663564192	0.875922758617484	0.971136321106511
Merged-chr2-120027502-4	chr2	120026977	120027977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114637)	promoter-TSS (NM_001114637)	-6.0	NR_104353	102238433.0	Mm.41467	NR_104353	ENSMUSG00000033852	Gm28042	Jmjd7-pla2g4b	predicted gene, 28042	ncRNA	5.36620407777849	5.55780756070318	5.39332463545816	5.58634596664752	5.66518888544747	5.73609694389472	0.405368912726701	0.212685759589915	0.605237916688018
Merged-chr8-26979676-2	chr8	26979176	26980176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	2340.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.80887277163621	5.61972610488314	6.18496245913453	5.93607274322691	5.87191220666974	6.16638241661792	0.194329649192268	0.556640150428984	0.863705610149867
Merged-chr3-69606667-4	chr3	69606153	69607153	+	909.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7693.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	5.81666575151011	5.78813678751749	5.77218112875889	5.46440431620158	5.43265190594292	5.90464613781608	-0.348503154504785	0.295298283811441	0.692165401824907
Merged-chr11-51585792-2	chr11	51585292	51586292	+	848.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028398, intron 2 of 12)	intron (NM_028398, intron 2 of 12)	1035.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	4.5078314725578	4.74419097790284	4.57032061237051	4.40945016220466	4.65985437183763	4.46659397065152	-0.219249225858825	0.610640674802822	0.885733148541533
Merged-chr4-135943510-2	chr4	135943010	135944010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2938.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	5.49839992793141	5.42197491627416	5.23080426513654	4.93483457660421	5.03413782271998	5.01762476476797	-0.817708354799522	0.0224715699125278	0.174422984074777
Merged-chr11-9118690-2	chr11	9118190	9119190	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159402, intron 1 of 8)	intron (NM_001159402, intron 1 of 8)	183.0	NM_001159402	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	2.24155837483725	2.23825245315687	2.61348497297719	2.15953474594747	1.95782805406011	2.11814257947598	-2.26912681866835	0.0239441529313721	1
Merged-chr5-99334208-4	chr5	99333695	99334695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-81268.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.19290817757566	6.17266957740257	6.01626330613127	6.13974021185684	6.12836247991766	6.03073211340874	-0.0542063304603284	0.848893006702816	0.964454098988612
Merged-chr7-43673231-2	chr7	43672731	43673731	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	1200.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	3.87598584400045	3.55087090340534	3.46387607773098	4.02908018622656	3.59959815032501	4.14940223317504	0.933881690847558	0.119589744425643	0.462205557813598
Merged-chr10-128459111-4	chr10	128458710	128459710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114096)	promoter-TSS (NM_001114096)	-26.0	NM_001114096	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	7.31116820966612	7.30297055665246	7.318479418886	7.42435242329893	7.50129423590272	7.09370003167512	0.0759914692488183	0.755504196729701	0.939323333778519
Merged-chr3-59210135-4	chr3	59209643	59210643	+	909.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028808, exon 2 of 2)	exon (NM_028808, exon 2 of 2)	739.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	6.92534684017696	6.73370239742988	6.52808591093121	6.95215864556604	7.01637641819002	6.83822852628204	0.299350887975888	0.255170187719416	0.652232019717434
Merged-chr5-88769863-2	chr5	88769363	88770363	+	564.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007832, intron 2 of 6)	B3|SINE|B2	4850.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	6.92324410062425	6.77104043115975	6.83897408950398	7.16622252617198	7.48949643787989	6.98518218642822	0.601256586726439	0.0232689732807337	0.178556806980045
Merged-chr19-40703850-1	chr19	40703350	40704350	+	548.0	f1_balb.idr	intron (NM_009848, intron 1 of 9)	B4A|SINE|B4	44080.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.00541195120684	3.99657547943125	4.39043352228926	3.87946456231108	4.01621641172869	4.02559502940698	-0.459734342352757	0.364518356152222	0.74990409323904
Merged-chr8-4274895-2	chr8	4274395	4275395	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011592, intron 1 of 12)	7SK|RNA|RNA	1010.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	3.79143852360463	4.14267276978941	3.92020511154399	4.17763507527062	3.85278526500352	4.13447384305188	0.275396480538993	0.59674870836483	0.880046639147099
Merged-chr19-44265523-2	chr19	44264988	44265988	+	767.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28188.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.01183793320082	4.1977683287176	4.13679776404531	4.58755486875793	4.55946635639431	4.3932965065515	1.07058415748538	0.0186433732960884	0.154343080993761
Merged-chr2-127077811-2	chr2	127077310	127078310	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 1 of 7)	intron (NM_026678, intron 1 of 7)	7153.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	5.50170864317237	5.23986534432599	5.84446653445126	4.85499936302442	4.9861870046682	5.13050372093287	-1.11124821613539	0.00403977237677521	0.0522933073937013
Merged-chr2-66142429-4	chr2	66141869	66142869	+	955.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17576.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	4.75712296194142	4.7235683415816	4.74195234177689	4.67038137978432	4.51123463640964	4.84427498336649	-0.164913426471079	0.686223474401399	0.916610846457002
Merged-chr1-9547991-4	chr1	9547480	9548480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	32.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	6.60834850511156	7.28258247561741	6.54653519031142	6.85868135635101	7.00957081606517	6.69442251776299	-0.00699880405420438	0.982404254355506	0.995997217680293
Merged-chr7-135651111-2	chr7	135650611	135651611	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	-788.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	4.76206827043289	4.33281167917028	4.71490146677377	4.12488728436836	4.1322946852466	4.19874997171583	-1.21517293638124	0.00943115671533007	0.0965675258624616
Merged-chr16-87439862-2	chr16	87439362	87440362	+	688.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_016924, intron 1 of 4)	B1_Mus1|SINE|Alu	730.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	5.4277327941681	5.53888733498089	5.72763669183997	5.82883072843622	5.75838716854722	5.65814349746929	0.355977852416119	0.266500439799316	0.664166899200562
Merged-chr9-37244617-2	chr9	37244117	37245117	+	719.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	L2|LINE|L2	11121.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	3.18340038151682	3.13058878171827	3.50893350974446	3.18513892078455	3.06829259105234	3.42625570676508	-0.202643573306079	0.757225196804567	0.939819795914786
Merged-chr10-43954121-3	chr10	43953629	43954629	+	824.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 19 of 19)	intron (NM_172393, intron 19 of 19)	50717.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	1.88923704541942	1.85952252252375	2.04742942986639	1.84117048940413	1.7650110423633	1.71646493314931	-1.42603048693156	0.169427258457178	1
Merged-chr14-45075042-4	chr14	45074556	45075556	+	964.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86945.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.9943891424143	4.79471160842314	5.18584645173766	5.07455052184403	4.82366296602942	5.12256807993831	0.0285246916788264	0.94196774671401	0.987092317509512
Merged-chr10-88417851-4	chr10	88417347	88418347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 5 of 20)	intron (NM_001004164, intron 5 of 20)	38435.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	4.64863847076848	4.24483678993362	4.48579266348489	4.55726078658928	4.50641240914056	4.12996212570324	-0.126532513884993	0.789436103086954	0.94921167421876
Merged-chr11-106136143-2	chr11	106135643	106136643	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	23784.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.75761519757741	5.75679134110647	5.51990896527052	5.29430143344742	5.71796660484426	5.33292858055671	-0.394350271286434	0.26018680731336	0.657649400461384
Merged-chr19-55561998-3	chr19	55561502	55562502	+	704.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	140202.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	3.7786552363825	3.92692989434854	3.54851264052359	3.18941497863091	3.41991981973427	3.5650464516943	-1.33289430412657	0.0301928272026958	0.209776617057608
Merged-chr2-148572935-4	chr2	148572442	148573442	+	947.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99673.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.72001502295964	4.80404631736373	4.64235106590278	5.2323571347505	5.06935191007968	5.25281875367207	0.982626172821338	0.0101193849360482	0.101264435569296
Merged-chr5-124474417-2	chr5	124473917	124474917	+	659.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	3818.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	3.88084909901106	3.37097018602472	3.35363683970289	3.63602177094027	3.53299903792389	3.48708341541078	-0.0442352670976051	0.943182876250174	0.987335800407922
Merged-chr8-78820107-4	chr8	78819616	78820616	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001191004, intron 1 of 4)	MIR3|SINE|MIR	1036.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	5.45851621200822	5.60797298935049	5.49477414129318	5.61296023051468	5.78104562812334	5.46781564516012	0.213491082628141	0.516262351188052	0.844051513295388
Merged-chr7-30090498-4	chr7	30089991	30090991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	19.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	6.10060570419753	5.8935194641312	6.20057211373599	5.58984078783778	5.74709447418176	5.76982849876782	-0.638574439961871	0.0390569681531262	0.245142822245998
Merged-chr9-106361350-2	chr9	106360849	106361849	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7283.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.45454965527016	2.31184476927527	2.53354557731339	2.45635947716882	2.06198838342372	2.54586604378796	-0.379450092292553	0.689186874280667	1
Merged-chr19-32906249-4	chr19	32905740	32906740	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	148663.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.83205322635144	5.79106892354111	6.03235593700125	5.8159615296659	5.81473949525417	6.15469767606617	0.0813004543506147	0.794966904718028	0.950960215791829
Merged-chr6-125231289-3	chr6	125230796	125231796	+	831.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015604)	promoter-TSS (NR_015604)	20.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	7.33959953072618	7.70943930142001	7.46886130137202	7.32716151439301	7.61803265085891	7.1173446821052	-0.199936368731553	0.450973773322196	0.808744879805816
Merged-chr12-84180134-2	chr12	84179634	84180634	+	850.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	13881.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	3.72947737395084	3.65999319952109	3.67754722152941	4.21961714149072	3.37537129354181	3.80301338658171	0.505666445847432	0.411127778146537	0.783860060341936
Merged-chr7-113722189-4	chr7	113721697	113722697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-43801.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	3.14034763517235	3.19059496322263	3.18664624156676	3.24074401778033	2.69106802346581	3.20188346623228	-0.447605189592171	0.547284146127831	0.859256588783723
Merged-chr11-117949822-4	chr11	117949264	117950264	+	875.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	19602.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	5.70020149933734	5.47441659407836	5.51091672193846	5.32042043979253	5.35150025908897	5.26545207229132	-0.48665694528267	0.14695254389161	0.511487796876645
Merged-chr9-35210427-4	chr9	35209925	35210925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	630.0	NM_172291	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	8.44134960090243	8.74151345678652	8.50133287694227	8.32449910187809	8.75856123371326	8.42895247958687	-0.0654269521638938	0.780757957054159	0.946078518476608
Merged-chr12-69485823-4	chr12	69485330	69486330	+	933.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10280.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	5.91771565344688	5.67697433754268	5.56326694617484	5.86562089307706	5.80201670698117	5.40755905923995	-0.0302615078136842	0.929182508865702	0.983987942057929
Merged-chr1-185362925-4	chr1	185362376	185363376	+	987.6785890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029735)	promoter-TSS (NM_029735)	-168.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	8.6076777070708	8.79569721113143	8.11082722838622	8.36518853359005	8.7098421541346	8.30975097219923	-0.0893907989535302	0.737262781934737	0.933677151386322
Merged-chr11-115708661-4	chr11	115708155	115709155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-58.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	7.95824069635113	7.31901319789434	7.52846129392104	7.8583230645186	7.46539981857988	7.69839334813074	0.0691559023874583	0.803133902409699	0.953422605427866
Merged-chr15-78327411-2	chr15	78326911	78327911	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	B2_Mm1a|SINE|B2	1421.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	5.53536897796937	5.7104502703889	6.0695880443215	5.89739275594933	5.85281671949835	5.78718436699343	0.127081993123935	0.698403264854053	0.920332843065367
Merged-chr6-17636959-4	chr6	17636453	17637453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007604)	promoter-TSS (NM_007604)	-57.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.73687709760702	7.29212854668569	7.26888899465314	7.57463884542915	7.27278450673524	7.52072687100369	0.00258882253571304	0.992175549486531	0.998427455457837
Merged-chr13-63431726-4	chr13	63431214	63432214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042673)	promoter-TSS (NM_001042673)	31.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	7.1040973707965	7.35674321853852	7.39105733218856	7.09305167143079	7.46545539288616	7.33023886389508	0.0325158219901584	0.897742107162645	0.976134735553722
Merged-chr10-34022027-2	chr10	34021527	34022527	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-2411.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	3.50172503313006	3.66658951450694	3.54004081774293	3.40714210186082	3.21286533590961	3.61029305227967	-0.604728498214337	0.314974544601252	0.709312911700361
Merged-chr16-23224819-4	chr16	23224318	23225318	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145933)	promoter-TSS (NM_145933)	78.0	NM_145933	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.6334839502803	5.95790555480889	5.93566092035878	5.90526680306019	5.63116231405367	5.69858090432514	-0.17828104364829	0.580107566584104	0.87276422265422
Merged-chr8-13600954-4	chr8	13600431	13601431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-38470.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	6.76172111978956	6.58639231630068	6.69705029736663	6.50432668253823	6.46762776131683	6.24356467036818	-0.423809990369215	0.114370106186558	0.451640064333496
Merged-chr5-136978062-2	chr5	136977546	136978546	+	556.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8858.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	2.70672962363498	2.59825313327184	3.09535843487395	2.91773604608009	2.70689303902892	2.7594131554527	-0.0740556990597163	0.923074117086152	0.982678716169247
Merged-chr8-122431732-4	chr8	122431236	122432236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	1204.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	8.70544865211847	8.70095583120525	8.65219801442919	8.75893653970741	9.05471206765189	8.57456101396522	0.180323893844355	0.41889287162257	0.788758778768065
Merged-chr10-70097038-4	chr10	70096520	70097520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111121)	promoter-TSS (NM_001111121)	-101.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	6.40510336598165	6.47307385895743	6.30703577073868	6.45130951401163	6.40049363194453	6.56804078987357	0.109482988827162	0.682602291507649	0.915155649724165
Merged-chr16-55976122-2	chr16	55975622	55976622	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173026, intron 1 of 10)	intron (NM_173026, intron 1 of 10)	-1505.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	4.06662136268412	4.00471904957925	3.94972216533474	3.62030364868973	3.92453709968179	3.86918559209454	-0.602747157296958	0.249160361812202	0.646134245609601
Merged-chr10-85353067-3	chr10	85352552	85353552	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-33762.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	3.90953792779223	3.99256957258974	4.099127681462	5.9408726740586	6.30537266564913	5.51283324254516	4.92215517177875	3.77760210837378e-19	2.19808892471025e-16
Merged-chr16-13672531-6	chr16	13672020	13673020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	662.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	8.77249586114374	9.15301678609228	8.57480378648329	8.73504521786209	9.04327855917746	8.5431601966936	-0.090091129828081	0.726963427765973	0.930086065338964
Merged-chr19-47512070-4	chr19	47511558	47512558	+	903.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045322)	promoter-TSS (NR_045322)	-924.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	4.50594718740691	4.4134866753998	4.83973125576015	4.32345164556209	4.11762398811442	4.32774784119361	-0.866129551355015	0.0602288583414208	0.317741973578996
Merged-chr18-75378778-2	chr18	75378278	75379278	+	684.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	11413.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	2.91448609961153	2.90544568176305	3.03583004239002	3.13062003048767	3.03948709929307	3.38342450147101	1.0637283759699	0.11532221281709	0.45342015234534
Merged-chr19-40612351-4	chr19	40611850	40612850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026260)	promoter-TSS (NM_026260)	-16.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.82651464266132	5.72145685742653	5.63597077860098	5.65721885720625	5.4956282657588	5.43428367236149	-0.371406168193972	0.247458343616439	0.644379854028811
Merged-chr12-36028428-1	chr12	36027928	36028928	+	789.0	f1_balb.idr	intron (NM_025359, intron 1 of 5)	MLT1D|LTR|ERVL-MaLR	14050.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	3.66909356847738	3.92784086572408	3.74915248195973	3.13344231404615	3.08043793453609	3.06959647374248	-2.95842017611181	2.42343446642715e-05	0.000860277880044667
Merged-chr11-118474068-4	chr11	118473567	118474567	+	966.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII|LTR|ERVK	-2765.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.9270752875796	4.61396232506088	5.26561761671747	4.73940890656667	4.80244393703618	5.24176804505827	-0.0311661257504146	0.943416401635095	0.987380806962619
Merged-chr2-153299154-4	chr2	153298676	153299676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008444, intron 1 of 8)	MIRb|SINE|MIR	7760.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	6.24976363070016	5.84515301415914	6.09711479903355	6.23739361080435	6.28280290015812	6.45047256478902	0.416939729965146	0.161829960511538	0.534962748966829
Merged-chr4-11254232-4	chr4	11253737	11254737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178112)	promoter-TSS (NM_178112)	22.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	6.7352129788487	6.58411257358087	6.61857086931432	6.58795264439436	6.47894691745855	6.72521979648364	-0.0886113111350704	0.735124367640574	0.932617455907478
Merged-chr6-134792685-4	chr6	134792161	134793161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001048054)	promoter-TSS (NM_001048054)	-33.0	NM_001048054	70686.0	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	8.26771062743616	8.52022982221279	8.28709435694353	8.14184429857021	8.18379443440415	8.04711696222457	-0.333986294260641	0.119412325921142	0.461906210278851
Merged-chr7-66109385-4	chr7	66108891	66109891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081163)	promoter-TSS (NM_001081163)	-124.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	5.66873116119061	5.52670841685812	5.84637307381355	5.702953483506	5.44651188463652	5.73752186736303	-0.0964306936164187	0.770504113286378	0.943392092118189
Merged-chr5-114770203-1	chr5	114769703	114770703	+	1000.0	f1_balb.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	3288.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	3.73733011480194	3.35792481664826	3.39717555235318	3.22657080433402	2.93350180548334	3.17560922044235	-1.6701020543167	0.0133084669388824	0.122591710068696
Merged-chr1-156450720-4	chr1	156450182	156451182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	23646.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	7.16896079983741	7.33762752590554	7.02566243707023	6.62690229369932	7.18744588827381	6.4631631229079	-0.56532454050654	0.0657769215425069	0.334670917986116
Merged-chr9-22165021-4	chr9	22164502	22165502	+	941.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8156.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	5.56528418880493	5.79655307438042	5.57257551420904	5.06691152316766	4.98809769733039	5.10625850081699	-1.20106085671594	0.000514634441572611	0.0107215079154666
Merged-chr11-4236520-4	chr11	4236081	4237081	+	765.5625	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013365)	promoter-TSS (NM_001013365)	-204.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	3.76654059807345	3.6883789474151	3.84964363207066	3.38323127344595	3.13958940291371	3.27661306454114	-1.94414375693482	0.00164684622454659	0.0266234273658584
Merged-chr6-142387131-4	chr6	142386628	142387628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204907)	promoter-TSS (NM_001204907)	-41.0	NM_023042	19691.0	Mm.27407	NM_023042	ENSMUSG00000030243	Recql	RecQ1	RecQ protein-like	protein-coding	7.3522877255968	7.4640815393824	7.02608971908397	7.44041661273759	7.315769870675	6.96912416343242	-0.0564688100362488	0.834192015868869	0.961273502395445
Merged-chr8-4493422-4	chr8	4492918	4493918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026058)	promoter-TSS (NM_026058)	13.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	5.08608657545321	4.86115694053414	5.07479642277621	4.89533773621986	4.76727565527862	5.13847843273967	-0.168340959147563	0.665839966900466	0.907921929236243
Merged-chr16-17508312-2	chr16	17507812	17508812	+	696.916687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025808)	promoter-TSS (NM_025808)	-371.0	NM_001331227	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	6.40317921685272	6.79370651222572	6.43554014844388	6.45856012375764	6.79670892627333	6.73381641765058	0.173627244220307	0.545795429529075	0.85834429351586
Merged-chr4-89458786-4	chr4	89458267	89459267	+	958.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147735.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.56601722998482	4.88644061678125	4.809317834269	4.70559439899654	4.79907794146005	5.14373342130497	0.284581745290029	0.494265764946809	0.831893381268053
Merged-chr5-29947037-4	chr5	29946506	29947506	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66108.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	5.86802145774292	5.30879910431676	5.39217031200905	5.94848368644757	5.79225520506935	5.35739695889722	0.323925365776188	0.393483925390651	0.771604147212602
Merged-chr18-89149306-4	chr18	89148805	89149805	+	838.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48122.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	3.3979963415698	3.07639621745231	3.47989366072081	3.37965004194337	3.28568833531273	3.44439232096017	0.170363958777728	0.786641746637449	0.948539061157129
Merged-chr11-5511551-4	chr11	5511052	5512052	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9089.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	7.39708954316625	7.69162568822614	7.21830605947434	7.5245374808664	7.95672730735303	7.47172930346693	0.320495058218378	0.239969295906072	0.636956753865794
Merged-chr7-98970866-2	chr7	98970366	98971366	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	132021.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.40620730000719	3.19303795320239	3.27257500005496	3.16218866052972	3.10213079433726	3.17060357264065	-0.638053810158267	0.313122242204715	0.707746598467115
Merged-chr17-43575511-2	chr17	43575011	43576011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	7060.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	3.77243819021389	4.05124868962665	3.96081869065814	3.65905233089968	3.37862812055134	4.28562341629989	-0.31146503314053	0.619349468779966	0.889749463061948
Merged-chr11-101301557-2	chr11	101301057	101302057	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359821, intron 2 of 3)	intron (NM_001359821, intron 2 of 3)	729.0	NM_019584	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	6.15879894361451	6.68512466134526	6.23949512553213	6.3812892776375	6.42798781354507	6.34055826770251	-0.0100196953005779	0.973451395998745	0.994039095662068
Merged-chr6-28423534-4	chr6	28423033	28424033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-71.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	7.38600013604728	7.44090973959897	7.53373219381721	7.56282934356854	7.34097053378131	7.60940239066117	0.0761930893218631	0.742892384378065	0.935368371900894
Merged-chr13-115900416-4	chr13	115899843	115900843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	409345.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	5.99765231465099	6.08423359299624	5.74059050532324	5.72677663904272	5.93915840128131	5.87982941203193	-0.186133673114926	0.548672876461844	0.859903049510983
Merged-chr19-40647693-4	chr19	40647171	40648171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	T-rich|Low_complexity|Low_complexity	-12099.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.63633485036212	6.61423480950029	6.93443011580584	6.67496197012798	6.6092929281146	6.67182153525736	-0.120808125017589	0.646495711223889	0.90100465546023
Merged-chr6-91693664-4	chr6	91693166	91694166	+	942.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	9599.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	3.65696283605551	3.56558559423525	3.54298483759231	3.70367845267496	3.53284343962175	3.82091763347751	0.316973701709906	0.569642728279794	0.8688875602138
Merged-chr5-122767227-2	chr5	122766727	122767727	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	12183.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	2.83125731732798	2.66661569648176	2.79629869463406	2.40557036621473	2.50042681107445	2.62420921553433	-1.50372715034327	0.0610645935871776	1
Merged-chr18-56432045-4	chr18	56431566	56432566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-66.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	6.58697852274324	6.48113733618391	6.12176641098204	6.38197216111704	6.18378526034399	6.66925909024731	-0.00818240789295442	0.978770586993416	0.995160277495735
Merged-chr5-92370583-4	chr5	92370094	92371094	+	935.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-7298.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	3.39564171896162	3.4845492445098	3.43052497284226	3.31385638618694	3.38326907602607	3.5008941928316	-0.153448427153331	0.793896094127374	0.950531747588938
Merged-chr1-85249191-1	chr1	85248691	85249691	+	738.5	f1_balb.idr	intron (NM_175219, intron 6 of 7)	intron (NM_175219, intron 6 of 7)	21375.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.21162901641075	3.1812064248174	3.37861124916785	2.83601823361993	2.83805096091344	3.78039200833353	0.0273579113619573	0.982744646180642	0.996084390562607
Merged-chr4-119845828-2	chr4	119845328	119846328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	31150.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.81227423585655	3.52114727948784	3.68868777631593	3.83927429560563	3.49697904453037	3.75898388585576	0.074272185611618	0.895641125379021	0.975665889379756
Merged-chr1-9907256-4	chr1	9906762	9907762	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1376.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	3.98932632978549	4.11743489561954	3.93511517539932	3.80633031441208	3.83871926120374	3.62801391906782	-0.785421846394972	0.135091282488395	0.491223853222672
Merged-chr15-38285059-2	chr15	38284559	38285559	+	943.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14841.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.21102355885471	5.11747280166946	5.11411717032442	5.41912120781887	5.57452604182543	5.248022787342	0.5619796618907	0.109400627262138	0.441960722570073
Merged-chr13-101908605-2	chr13	101908105	101909105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-140388.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	8.49800707248418	8.72688053131931	8.46353170537667	8.45703586557872	8.87155802409564	8.28419479539575	-0.00071324950997397	0.997705739492785	0.999535504317229
Merged-chr13-75842527-1	chr13	75842027	75843027	+	577.0	f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	B4A|SINE|B4	2641.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	2.88038508724249	3.18117008673654	2.97210774525183	3.00018625176212	3.08453916287013	3.27507393414057	0.442184883426059	0.518624219549999	0.845421284780118
Merged-chr2-128761518-2	chr2	128761018	128762018	+	804.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 7 of 18)	L1MEc|LINE|L1	-56785.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	3.67965553794819	3.61292814249657	3.90103125507821	3.60495161050013	3.57905979497341	3.87567082372235	-0.149112147922944	0.788192379887376	0.948904207939777
Merged-chr7-19619418-7	chr7	19618938	19619938	+	855.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290457, intron 3 of 10)	intron (NM_001290457, intron 3 of 10)	10000.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	3.66471047887242	3.34475305589571	3.81274806216615	3.3056951315426	3.32578762829504	3.36954798969737	-1.05787619249399	0.0850159093179396	0.386129323574646
Merged-chr15-9955224-3	chr15	9954752	9955752	+	710.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-206384.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	2.1545230122321	2.12281180749619	2.32582542076423	2.11091925798275	2.11526114560492	2.14067083622077	-0.570507450325366	0.519446648383696	1
Merged-chr2-119898489-4	chr2	119897990	119898990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013720, intron 1 of 23)	intron (NM_013720, intron 1 of 23)	1262.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	6.21703717841736	6.26988809274989	5.90606018313296	6.45773271127374	6.50387411062351	6.49934661405173	0.549142037513923	0.053563473342152	0.296810701242261
Merged-chr18-49834607-2	chr18	49834107	49835107	+	773.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1610.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	6.57727811769794	6.62009869018417	5.89217260453204	5.98152168955982	6.41581062830607	5.84598263574327	-0.491029231277116	0.170685615732102	0.548292040066275
Merged-chr11-20732496-3	chr11	20731996	20732996	+	975.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	L1MD2|LINE|L1	9060.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.15740393970759	4.28459140737954	4.029316596352	3.68439596150824	3.40801634793791	3.74140087253422	-1.83070374995179	0.000936803558382091	0.0171129638827348
Merged-chr17-27961683-2	chr17	27961184	27962184	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MIRc|SINE|MIR	52378.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.57741542484034	5.48701607476274	5.34912177807046	4.87668983230227	4.9520391295407	5.19072207355027	-0.970853975552136	0.00685682055501012	0.0769547241355923
Merged-chr9-85389190-4	chr9	85388699	85389699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62049.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.30115865873442	6.22416910919948	6.14699814025669	6.33155825451125	6.42522412372575	6.4085855775868	0.263633193579826	0.332507229579002	0.723636403333698
Merged-chr18-60789467-4	chr18	60788948	60789948	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14401.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	4.23041063602666	4.04470010318941	4.13867942559249	4.90931885279278	4.93167287131426	5.18129449823525	2.14675240774077	1.41707636378677e-06	7.35571366674794e-05
Merged-chr7-123369563-2	chr7	123369063	123370063	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	CpG	352.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	8.25408762158752	8.35834124487161	8.14032101744851	8.01945828564141	8.39139435170005	7.99315789546819	-0.142289591115883	0.542342403588657	0.857068480766623
Merged-chr9-105656375-1	chr9	105655875	105656875	+	698.0	f0_balb.idr	intron (NM_001081309, intron 6 of 19)	MTD|LTR|ERVL-MaLR	13380.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	3.88984967970306	4.04421140496035	4.25707926944499	3.9382138708198	3.98373069772615	4.05840670754633	-0.211924122974987	0.671461302680296	0.910528012497292
Merged-chr18-20713615-4	chr18	20713103	20714103	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32801.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.00545965973044	4.90255364990219	5.29383136215159	5.12035076905795	4.89290687820784	5.29772473697379	0.0759817859967528	0.845354301659298	0.963773214686551
Merged-chr2-78037705-3	chr2	78037196	78038196	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13481.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.49667139065918	3.80082879040646	3.62492829833496	3.44846406278476	3.65085994515215	3.58827748336213	-0.284305366120831	0.619571322029463	0.889853069353322
Merged-chr13-99197128-2	chr13	99196628	99197628	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	12305.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	5.42531619852888	5.44532697544112	4.89445856110658	5.44927460244002	5.60920502771089	5.00433891938444	0.196075797686594	0.631386113547665	0.895122791781359
Merged-chr8-40321223-2	chr8	40320731	40321731	+	830.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	13180.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	2.70987154175925	2.86511541571543	3.09008563888704	3.03945398786662	3.32901328808191	3.32836597456567	1.60641489274289	0.0257931021625785	0.190417216284609
Merged-chr10-80597290-4	chr10	80596784	80597784	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5596.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	6.74056429483683	6.37734395045899	6.62867312853894	6.99565431356471	7.33042702265598	6.83259791771441	0.759710170074423	0.00737491757049074	0.0811923976191312
Merged-chr7-30393264-5	chr7	30392724	30393724	+	902.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-20564.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	5.96754198758437	5.59558415419803	5.97221350600763	7.14367902349542	7.3107503298932	7.26388922700007	2.24161831849614	1.24073077423581e-15	3.83787086478116e-13
Merged-chr1-131977932-5	chr1	131977408	131978408	+	810.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145977, exon 3 of 5)	exon (NM_145977, exon 3 of 5)	7299.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	5.70740551198021	6.06895419150164	6.05488760374341	5.91186426560213	5.85583614115462	5.86187558904059	-0.131030111019621	0.672760254169465	0.910949422492829
Merged-chr2-37419198-2	chr2	37418698	37419698	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001100591, intron 2 of 21)	intron (NM_001100591, intron 2 of 21)	3705.0	NM_001100591	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	4.51516801089403	4.80181149441359	4.38743040827048	5.41278419659775	5.61431157337876	4.99336511660756	1.68246794565173	0.000107397510193083	0.00301151458060249
Merged-chr2-143975005-1	chr2	143974505	143975505	+	603.0	f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	B2_Mm2|SINE|B2	36258.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	4.54196826849514	4.35569097302013	4.62249627587549	4.47390000885012	4.42319690779782	4.68786325379732	0.0482926726252649	0.911369314436691	0.980089251983496
Merged-chr8-75153931-4	chr8	75153294	75154294	+	751.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44285.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.95427154863277	4.81919937103911	5.29408549464309	5.53005376986163	5.2589052715317	5.29620226930042	0.703647826793227	0.0627067254907698	0.325608916309714
Merged-chr3-97993353-2	chr3	97992853	97993853	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20185.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.97453619644577	4.76375773171588	4.80391101060647	4.98254005684403	4.80109133454275	4.90728044228675	0.0944305862291571	0.807897806453979	0.954583809755663
Merged-chr5-21515090-4	chr5	21514583	21515583	+	802.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199632, intron 17 of 20)	B1F|SINE|Alu	-28444.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	3.96740454844795	3.79244877979163	4.14312285925728	4.30691314987741	4.12239542221589	4.34160317211065	0.829285298084762	0.0924925109910016	0.405144075307394
Merged-chr11-52080174-4	chr11	52079664	52080664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-18660.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	5.64652127673346	5.43104183831137	5.48893447718389	5.03995118503805	5.30851354815945	5.1416347397736	-0.691106203885164	0.0496800864057551	0.283594078238178
Merged-chr11-78537019-2	chr11	78536519	78537519	+	666.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	658.0	NM_018854	55978.0	Mm.358671	NM_018854	ENSMUSG00000001105	Ift20	0610009H04Rik|AU015496|mIFT20	intraflagellar transport 20	protein-coding	6.6748502549698	6.83201974764984	6.33600653540424	6.38466796050889	6.66525252698579	6.13210008251255	-0.341766139739979	0.269703695483015	0.66686579973798
Merged-chr7-35124947-4	chr7	35124442	35125442	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5649.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.26394239412402	3.75001441856561	4.12912548978449	3.92853901599343	3.59438025292361	4.10724449033565	-0.534630593878556	0.341431369819184	0.730861271883589
Merged-chr5-120891265-4	chr5	120890764	120891764	+	845.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3651.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	3.60397944625054	3.8077098026985	3.91890776705452	3.74840284275588	3.76078350099362	4.32752278104784	0.573040506216857	0.31150127535381	0.706523409477924
Merged-chr17-78835464-4	chr17	78834965	78835965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	-51.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	5.54709100109139	5.65650619902252	5.78889011560682	5.66460843110498	5.76110018590444	5.67063559138071	0.077991136792754	0.804419955231241	0.953645244705356
Merged-chr10-84109888-4	chr10	84109375	84110375	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9178.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	3.11800162530953	3.23267657325723	2.9528440383443	3.10873241234844	2.75090350960657	3.08797750796176	-0.548687604918225	0.44291700320861	0.803436014387
Merged-chr11-79119020-4	chr11	79118506	79119506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	27467.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	6.05587295160592	5.8122838370512	5.70343502020775	5.93091404640289	5.72968365511972	5.6830375551115	-0.153325029724301	0.629959014741097	0.894468272389631
Merged-chr6-84060430-2	chr6	84059930	84060930	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 4 of 54)	B4|SINE|B4	41044.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	2.28341109751296	2.28356701055522	2.46269376209221	2.24225398844592	2.21163506251291	2.41165344441478	-0.367605402739458	0.664021925212447	1
Merged-chr8-120495092-3	chr8	120494631	120495631	+	934.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	6265.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.62411345142186	3.53279141188259	3.39589953725529	3.68523357664417	3.40980265808338	3.46861939675412	-4.21470251846027e-05	0.999942602625175	0.999986582743456
Merged-chr15-86446303-3	chr15	86445812	86446812	+	947.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358062, intron 8 of 9)	MTC|LTR|ERVL-MaLR	168637.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.42562051501559	3.41863264294666	3.61764596604185	3.34480761948519	3.47545215851194	3.47928799222758	-0.186286840844158	0.749929019785121	0.937463855381525
Merged-chr11-84179576-4	chr11	84179060	84180060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12084.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	6.49895846265152	6.10571941191737	6.01860230747759	6.37144754329816	6.01345698813728	5.70965579108508	-0.276826439892928	0.418694090285647	0.788741178729639
Merged-chr8-70744442-4	chr8	70743953	70744953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201607, intron 3 of 16)	CpG	-10226.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	6.65581695721359	6.76294770458154	6.38439200202181	5.87841974712943	5.95754404965302	5.65734734405518	-1.28619197276645	1.98943298929311e-05	0.000726994906337731
Merged-chr3-31104473-4	chr3	31104152	31105152	+	807.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	B1_Mus1|SINE|Alu	9594.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	5.99735601335506	5.9329534551581	6.15107907591561	6.40861225552786	6.6295380439888	6.4819986272316	0.819683287266776	0.00338583975307727	0.0460191039160492
Merged-chr9-119261951-4	chr9	119261445	119262445	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 9 of 18)	intron (NM_001359582, intron 9 of 18)	-30253.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	3.62214233488514	3.7423321076425	3.77089599568272	3.6124463288397	3.5932616085735	3.63465210272876	-0.340626282791743	0.530857350381853	0.851363932161699
Merged-chr8-120669053-4	chr8	120668539	120669539	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010926)	promoter-TSS (NM_010926)	719.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	7.41899336515291	7.67019929757701	7.45636599816832	7.55974705819393	7.63617361575208	7.51326575989276	0.0732094997588692	0.749746277411439	0.93745630986217
Merged-chr11-21095059-2	chr11	21094559	21095559	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	3735.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.9176554033621	5.09468986358664	4.96596767742775	5.27543236259162	5.18523119485076	5.4423987855591	0.624184089184622	0.086720872867013	0.390131400817389
Merged-chr5-107646137-4	chr5	107645634	107646634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359917, intron 11 of 12)	B1_Mur1|SINE|Alu	-12284.0	NR_046195	78443.0	Mm.490703	NR_046195	ENSMUSG00000085900	A930041C12Rik	-	RIKEN cDNA A930041C12 gene	ncRNA	5.55389930022471	5.66590907654805	5.82468420856972	5.68268585445624	5.61625248998066	5.32334922162962	-0.22195454171034	0.506604195458619	0.838499472353014
Merged-chr6-120912027-2	chr6	120911572	120912572	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	4752.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	1.76606073123777	1.9048253075952	1.86817725110351	2.11807938011815	1.87150123981271	2.15015090660233	1.69549908302039	0.0953073469084837	1
Merged-chr17-57104576-3	chr17	57104074	57105074	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-811.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	2.52787734018484	2.41942924728574	2.63889848762015	2.97134919471298	2.54791866563445	2.89849707176205	1.60738885350738	0.0469619711721487	0.274334266827086
Merged-chr11-62576698-4	chr11	62576190	62577190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011706, intron 2 of 15)	intron (NM_011706, intron 2 of 15)	2204.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	7.12235646298742	7.29454747523349	7.16668270125179	7.038842173649	7.21271191048356	7.08579774818079	-0.120412781818644	0.614233332894439	0.887435546271868
Merged-chr5-119240781-1	chr5	119240281	119241281	+	765.5	f0_balb.idr	Intergenic	Intergenic	-40763.0	NR_046033	665194.0	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA	2.05352718207563	2.16095187664683	2.44639478865435	1.98950284773026	1.80666542581954	2.07489683803065	-2.27660651248916	0.0352447642875495	1
Merged-chr4-59596795-4	chr4	59596285	59597285	+	913.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301367, intron 5 of 11)	intron (NM_001301367, intron 5 of 11)	15222.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	5.27700082972667	5.15356893666955	5.54485140622592	5.93771777910091	5.84805116212587	5.57954582242486	0.907923443690804	0.0077999882175147	0.0845630514140669
Merged-chr13-112131334-4	chr13	112130764	112131764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157187.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.88236453186914	5.29629667472994	5.40316031975813	4.8228253979617	4.95732126903641	5.13739320121215	-0.490125488108491	0.216405548519592	0.609899501463833
Merged-chr11-76605838-4	chr11	76605354	76606354	+	938.462524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-28115.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.72099337483746	6.84479828042183	6.41982374350908	7.1071856571563	7.29109024467135	6.75320765269778	0.6089320689274	0.033585400086642	0.223870381351383
Merged-chr17-71300553-4	chr17	71300075	71301075	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10436.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.41601020235166	7.03237433669483	7.22313304977736	6.99796355536837	7.29355183874981	7.12208963574516	-0.129289130849597	0.616061978155279	0.888241151224974
Merged-chr5-29378446-4	chr5	29377926	29378926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020295)	promoter-TSS (NM_020295)	-36.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	6.84206780793322	7.17429842404821	6.83014448980464	6.69468069045335	6.70634631675154	6.38342197606584	-0.548092896800198	0.0473459507600854	0.275609477462235
Merged-chr9-102615309-3	chr9	102614813	102615813	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001301689, exon 6 of 15)	exon (NM_001301689, exon 6 of 15)	10811.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	2.8285207139643	3.07759619095436	2.95937281283757	3.36372771501327	3.58150913207213	3.50494788674641	2.31203383757755	0.0010116306253746	0.0181844374759493
Merged-chr5-23435349-7	chr5	23434794	23435794	+	987.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040469)	promoter-TSS (NR_040469)	865.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	7.88020608072381	8.37466969289697	8.13122227981595	8.07681192261134	8.53486674395003	8.51234067440297	0.343990704019233	0.180262712840075	0.561960953504812
Merged-chr4-89363503-1	chr4	89363003	89364003	+	718.0	f0_balb.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-52471.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.65822037469326	3.82171970780258	3.57213411220003	3.44788347983249	3.41837246147143	3.69548921285905	-0.617616312961256	0.28152429455906	0.67967073158435
Merged-chr9-78588055-5	chr9	78587499	78588499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	46.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	8.4496157626614	8.61569752097662	8.30299732910434	8.28167995635244	8.622474612033	8.3462623021021	-0.0504147244267096	0.824289522604846	0.958538023027357
Merged-chr8-25993212-2	chr8	25992712	25993712	+	934.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029037, intron 1 of 4)	B3|SINE|B2	909.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	6.93480019203668	7.07819762639321	7.02776228755238	7.27328207151374	7.09756970711596	7.07250245158437	0.207667521507742	0.388993449501064	0.768839329819819
Merged-chr17-50522657-3	chr17	50522136	50523136	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	13089.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	3.74248291911524	3.51189220185436	3.59125736067343	3.32110376384787	3.26587922683876	3.50173634901412	-0.980431630818611	0.0985822982706337	0.418682925403373
Merged-chr3-94955181-2	chr3	94954721	94955721	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355705, intron 2 of 9)	intron (NM_001355705, intron 2 of 9)	705.0	NM_001355705	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	4.1884787910424	3.86880506589477	3.91153816365101	4.09586348728461	4.23118124297886	4.08266976505232	0.405468914310915	0.416421668727285	0.787340667542254
Merged-chr2-118263570-4	chr2	118263089	118264089	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6623.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	6.17668427248744	6.05382142076504	5.48430996630877	5.93038258082939	6.19753592597436	6.08722091682041	0.21549368274297	0.528641784882083	0.850585575598857
Merged-chr6-83613451-4	chr6	83612962	83613962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40958.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	4.27248569816144	3.9615355684983	4.45483216404744	4.02130839731958	3.83234176371734	4.05991142598105	-0.791472417070344	0.122436190404378	0.468054329282712
Merged-chr4-63365822-2	chr4	63365322	63366322	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011016)	TTS (NM_011016)	3373.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	2.09343059515162	2.13256255115977	2.36535115537328	2.03211728983888	1.997070613708	2.18613906440683	-0.958467868543024	0.298571511647211	1
Merged-chr13-102887681-2	chr13	102887181	102888181	+	728.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	B1_Mur1|SINE|Alu	127426.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.05363169032976	2.87500826762866	3.28342798290368	3.0730807687448	3.38065495716728	3.29984998179592	0.787607502771276	0.247101625850016	0.644145276280485
Merged-chr5-20257327-1	chr5	20256827	20257827	+	595.0	f0_balb.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349809.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	5.63405670520025	5.4140787336945	5.51915739023466	5.14533265959428	5.36845941029027	5.63502063670899	-0.26185902393299	0.45703624737548	0.811993709825292
Merged-chr16-25026045-2	chr16	25025545	25026545	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-33594.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.05195214799293	4.07270828168095	4.28469518706877	4.31146939715869	4.09802913748446	4.69897496792491	0.66612190318773	0.179539438950264	0.561093620137974
Merged-chr10-128371235-2	chr10	128370735	128371735	+	799.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1198.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	5.76342054151588	5.73743570196006	5.93875088830144	5.92903481801994	5.91294087120825	5.80628059406992	0.141799163136973	0.638987830657787	0.897847437626511
Merged-chr13-74639108-4	chr13	74638617	74639617	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030711)	promoter-TSS (NM_030711)	-736.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	4.92021582952009	5.2951352902246	5.17855496147988	5.30021382122805	5.48149669403828	5.45816974289449	0.551023405160166	0.126864362164346	0.475994491904717
Merged-chr18-38253124-4	chr18	38252635	38253635	+	836.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024179, intron 4 of 12)	intron (NM_024179, intron 4 of 12)	-2570.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.22254212456607	4.19646737333831	4.33980981177759	3.98112511550001	3.96179743962949	4.19027252342839	-0.597944783630148	0.209996179839779	0.60193932923403
Merged-chr15-97824133-4	chr15	97823638	97824638	+	895.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	7629.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.89738944668447	4.92205849008776	4.59051410715876	4.57473727463253	4.17199110176638	4.39157636824334	-1.0611815550188	0.0169888723764168	0.14482226131512
Merged-chr1-45906816-4	chr1	45906301	45907301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18793.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	5.55209578215962	5.66106144596809	5.8408878063912	5.59868112921296	5.79611806373999	5.70311984182925	0.0443805056704808	0.889587572359339	0.974248428244699
Merged-chr10-91167074-4	chr10	91166573	91167573	+	813.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080129, intron 1 of 8)	B3|SINE|B2	3477.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	2.92477628271083	2.90718497963467	2.74147179463951	3.10977236372824	2.92484345886728	3.0666574362999	0.798981935287299	0.256603038114166	0.653682511929703
Merged-chr1-127977202-2	chr1	127976702	127977702	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	108429.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	5.35128312150774	4.95304435157489	4.64625956268913	5.07002707383853	5.28599674370687	4.88708498898053	0.150218859991387	0.726364749208573	0.929807668258622
Merged-chr13-88730444-2	chr13	88729944	88730944	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-91028.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	2.86964508300912	3.09285089365873	2.91153786041045	3.31527218838398	3.30197153726938	3.4535850574724	1.70684826148005	0.0127365048951322	0.119237072380081
Merged-chr12-35532259-3	chr12	35531730	35532730	+	938.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	2759.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	3.6104209842556	3.49446485370762	3.54639094314831	3.32869580391954	3.394091378516	3.61629388050634	-0.390514906332738	0.502644067009507	0.836563806935235
Merged-chr13-95892100-4	chr13	95891569	95892569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027711)	promoter-TSS (NM_027711)	-147.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	7.9163949306228	8.02202157455464	7.76649151213607	7.83498924330613	7.91003648887145	7.71645195021362	-0.11949938954301	0.590452602004978	0.87721930044775
Merged-chr4-116666892-4	chr4	116666368	116667368	+	907.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-15194.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	5.08535094106465	5.17479733220474	4.89678517806788	4.369830843845	4.75403084288085	4.41381781883975	-1.19167809758454	0.00589581555659708	0.0689112264128852
Merged-chr2-69790483-4	chr2	69789997	69790997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028521, intron 2 of 3)	intron (NM_028521, intron 2 of 3)	760.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	6.72966518713708	7.1404342879649	6.70900913705039	6.97076972674464	7.45323606890232	6.8793243566005	0.38780997426868	0.195059028776941	0.582787221560878
Merged-chr3-88627733-4	chr3	88627237	88628237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	6343.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.50491647650985	5.00185018586711	5.62104957198634	5.29928193113262	5.39242856580857	5.55179522351747	0.0386350527134917	0.918452646161132	0.981774101853545
Merged-chr11-82908404-4	chr11	82907915	82908915	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145431)	promoter-TSS (NM_145431)	-20.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	3.75789046670846	3.77009118683487	3.5469089267932	3.7068646687725	3.39690417988666	3.67312078660896	-0.370830763245337	0.516581882337156	0.844296391152365
Merged-chr11-73049482-2	chr11	73048982	73049982	+	726.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_025818, intron 1 of 12)	intron (NM_025818, intron 1 of 12)	1615.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	3.70936359120771	3.45336535385419	3.78914367506277	3.7851810693244	4.07606240457898	3.70197870737592	0.719802641946125	0.201071275451764	0.590566137938241
Merged-chr10-7816684-3	chr10	7816198	7817198	+	640.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-15772.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	3.8675184476228	3.59327559623732	3.74784589050815	4.25474655870698	3.7481659079633	3.81962743929923	0.688664359388465	0.216936886144124	0.610549109497049
Merged-chr15-12205605-2	chr15	12205105	12206105	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356498, intron 1 of 15)	CpG	577.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	7.16993515664563	6.90041881273947	6.51505554721884	6.92502254868451	6.35482586862312	6.66350515518985	-0.360986276030839	0.251539684174896	0.649003529938392
Merged-chr1-128615109-4	chr1	128614602	128615602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22803.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.78999361544447	6.11365089943365	6.0740514548708	4.90603676011954	4.81579939009513	5.63620063379128	-1.59677383362539	7.81179241665901e-05	0.0023013042493106
Merged-chr13-119808578-2	chr13	119808078	119809078	+	766.875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-17456.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	5.09561246321152	4.79666006911215	5.30548683356313	5.33112702516951	5.03082630049966	5.0812943936136	0.171446634054978	0.661337208091434	0.90634186627476
Merged-chr5-90654607-2	chr5	90654112	90655112	+	945.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14085.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	4.61341298908633	3.8351843344365	4.12284947676151	3.85430267011101	3.83788671958347	3.83798329607899	-1.14898536934231	0.0391058239789487	0.245171594457532
Merged-chr7-12478312-4	chr7	12477832	12478832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039951)	promoter-TSS (NM_001039951)	27.0	NM_026112	67370.0	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	5.87780203617584	6.31402674982345	6.04567961216427	5.53134406789483	5.74069227038724	5.82589269004663	-0.695172738813572	0.0313722979658056	0.21461318107652
Merged-chr11-8605985-4	chr11	8605548	8606548	+	886.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	58487.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.67385434971457	5.7092020516011	5.37594652461614	5.62184876110567	5.52216252194635	5.20071468954936	-0.252464256274646	0.470885995380898	0.819784379107259
Merged-chr11-97700335-4	chr11	97699693	97700693	+	850.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163307)	promoter-TSS (NM_001163307)	304.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	4.40764717016599	4.26051550327716	4.41703328552462	4.6324787087962	4.12029362734393	4.48413700895104	0.161247493690812	0.731375017393631	0.931363959034745
Merged-chr16-22440807-2	chr16	22440307	22441307	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1237.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	5.79755439131202	5.82823524494125	5.74785752890974	5.64313817389957	5.7739828462168	5.7044466910798	-0.150405196162335	0.623284220015149	0.891364030370049
Merged-chr7-34188794-2	chr7	34188294	34189294	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026549, intron 5 of 6)	B3A|SINE|B2	7876.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	3.77754322513436	3.89864704863295	4.1254870159412	3.65308499623117	3.82557388734071	4.10564651775447	-0.207416884399073	0.701078253097782	0.921132469347233
Merged-chr13-34709773-3	chr13	34709280	34710280	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29862.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	6.06455664233014	6.2857936828783	5.67837839164402	5.47122060330104	5.55942836310833	5.22578907644915	-1.10053580250907	0.00182094687704445	0.0287182236059732
Merged-chr1-84881745-4	chr1	84881252	84882252	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025386, intron 2 of 3)	RMER15|LTR|ERVL	41911.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	3.92447296526655	3.61118086664017	3.83877839948696	3.96342440912486	3.77688691650979	3.80626860616988	0.172599853849736	0.746493562002029	0.936300236930265
Merged-chr14-51093642-4	chr14	51093142	51094142	+	999.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	-2358.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	5.20778476766388	5.22930032571421	5.34658747159766	5.42384047865761	5.65457530049344	5.55537893803383	0.574696833035666	0.0875532670070841	0.392363379455369
Merged-chr13-48513468-4	chr13	48512956	48513956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164575)	promoter-TSS (NM_001164575)	-20.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	6.35811556404087	6.59067346480034	6.33663050737578	6.37905967744543	6.66675017937106	6.41604877685701	0.101188328250532	0.718513122315154	0.927393968295076
Merged-chr10-60933042-4	chr10	60932539	60933539	+	938.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5093.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	6.89865988177657	7.38923344934461	6.73350849412252	7.17141915662503	7.34867496702132	6.72457553370946	0.104181057224176	0.739984075863074	0.934390478699992
Merged-chr12-111760845-1	chr12	111760345	111761345	+	544.0	f1_balb.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	1977.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	3.6728585223447	3.83651649545499	3.92475588774085	3.93502657267496	3.63528930320738	4.21450486290672	0.396769624156699	0.473770703398558	0.821127552925227
Merged-chr12-3904795-2	chr12	3904295	3905295	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 15 of 17)	intron (NM_153743, intron 15 of 17)	13051.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.95509192979613	7.17824925204675	6.49854991714904	6.78703799095769	6.8754324488414	6.26548727114031	-0.366665691589194	0.257006851067759	0.654236426213667
Merged-chr8-126929695-4	chr8	126929200	126930200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024214)	TTS (NM_024214)	16221.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	5.69319936872965	5.39588853163041	5.42324703187557	5.44692524837247	5.55435699321637	5.42551644531855	-0.0651114358758015	0.846769970860969	0.964111312125802
Merged-chr7-67360057-3	chr7	67359574	67360574	+	771.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 1 of 11)	L1MC4|LINE|L1	12784.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	4.5198182657186	4.41079476848327	4.57653230178117	4.43150616334409	4.35262591835104	4.39278668474647	-0.277718077306381	0.519483877977584	0.84582839931823
Merged-chr16-17222373-4	chr16	17221869	17222869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-11218.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	3.6299029300399	3.72042290511625	3.94449581327205	3.59868347720586	3.4639028096174	4.22264771973483	0.0984100396111215	0.871736883227575	0.970250220039897
Merged-chr12-54697258-1	chr12	54696758	54697758	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-1364.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	5.41587142424037	5.28933950062281	5.22903632879461	5.26302799164664	5.34884117911898	5.64027017404268	0.195382397258817	0.577691577061589	0.87219514592351
Merged-chr11-69758263-2	chr11	69757753	69758753	+	1000.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_001291068, exon 1 of 29)	5' UTR (NM_001291068, exon 1 of 29)	380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	6.27555244764257	5.83118489788376	5.85869410279403	6.04340101817025	5.98095717575616	5.89540099309084	-0.0609471618854723	0.847250918217275	0.964194627756209
Merged-chr19-58942994-4	chr19	58942491	58943491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178689)	promoter-TSS (NM_178689)	-434.0	NM_178689	226265.0	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	5.89468092754262	5.96825092582134	5.27819393435016	5.5039663713357	5.78689292851535	5.47803098897224	-0.286539233817839	0.439031012647668	0.800937323779458
Merged-chr18-74215540-1	chr18	74215040	74216040	+	662.0	f1_c57bl6.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-672.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	4.69238333873464	4.76619886735658	4.82763959562407	4.74252435721406	4.91610888494468	4.77941161742597	0.139412206615088	0.722875031401412	0.928972897683858
Merged-chr10-78465063-4	chr10	78464588	78465588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-140.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	9.01657353326257	9.23853620712523	8.73015684968277	8.90753412778458	9.12603125999713	8.66102333078168	-0.135624422298601	0.578567825144502	0.872437129840066
Merged-chr17-80729325-2	chr17	80728825	80729825	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1300.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.54102254522173	4.60722350874158	4.78038591773371	4.83376595534411	4.90809332388738	4.95349593583555	0.597317779654549	0.131487441527411	0.48479293843552
Merged-chr2-79257124-4	chr2	79256638	79257638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	1712.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	6.63627265768805	6.766860007565	6.62928878401946	6.6341894627197	6.83466457047741	6.63795940401574	0.0478947416376682	0.853044915174385	0.965597129346461
Merged-chr4-125065658-4	chr4	125065154	125066154	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	3.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	4.6537713103346	4.81829369658864	4.75913001702976	4.44318423867091	4.52467130107448	4.50340007334384	-0.611054062994135	0.139307049547802	0.498729067153151
Merged-chr11-58928484-4	chr11	58927994	58928994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10412.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	7.08026479416599	7.20114705605128	7.01238876651521	7.52346360903021	7.65328569170231	7.33397283645651	0.61184797441827	0.0111089909389399	0.108276551253053
Merged-chr6-86849374-4	chr6	86848880	86849880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	60.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	8.3793832190322	8.57707958878629	8.28184059535997	8.3810202832567	8.42933293408367	8.14488591754431	-0.130170952037526	0.556930540854832	0.863895388752263
Merged-chr16-8736168-4	chr16	8735656	8736656	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003918, intron 1 of 30)	intron (NM_001003918, intron 1 of 30)	2186.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.09566512137371	4.19646929581511	4.14805040872859	4.00037217910226	4.20633378323012	4.07405532595746	-0.129819396645164	0.785865760082393	0.948198559524928
Merged-chr16-92038131-4	chr16	92037622	92038622	+	958.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20200.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	4.75790685583769	4.72291574085379	4.93338444918195	4.70601358840312	4.60210421883269	4.34888017553826	-0.547046207297895	0.1958205724418	0.583465154167297
Merged-chr16-90223527-3	chr16	90222961	90223961	+	749.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011434, intron 2 of 4)	intron (NM_011434, intron 2 of 4)	2719.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	4.09423331276043	3.81283542828544	4.13870337848724	3.66612683027648	4.03959806957919	4.11713573640399	-0.191655240407728	0.720228594177109	0.928078002637153
Merged-chr4-6373903-6	chr4	6373366	6374366	+	843.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	8186.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.56983283437393	7.73646150046639	7.30319279542269	7.48971996089395	7.88692391442851	7.07459941585328	-0.0216409883207566	0.942000162742593	0.987092317509512
Merged-chr8-60993089-5	chr8	60992576	60993576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293637)	promoter-TSS (NM_001293637)	-117.0	NM_001293637	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	7.64153710906514	7.68545995176416	7.5399168462974	7.65503310664385	7.63909394071157	7.51637046344069	-0.0276061050910459	0.900540750419052	0.976862077000417
Merged-chr19-12007072-2	chr19	12006572	12007572	+	721.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29668.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.07576235052461	4.95579110062107	5.13009457533023	4.87044694458726	5.17766188428149	5.19375637594945	0.0801314878559291	0.830814828148024	0.960370002015736
Merged-chr14-44987074-2	chr14	44986574	44987574	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER115|DNA|hAT-Tip100	-1037.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	6.07836413494997	6.18484737974135	5.99196496788185	6.12004426608425	6.24161222742418	6.36572822154463	0.250808424492725	0.380995142244806	0.762943872639242
Merged-chr2-153110635-1	chr2	153110135	153111135	+	545.0	f1_balb.idr	intron (NM_001172117, intron 1 of 12)	MER5A|DNA|hAT-Charlie	2167.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.29510493913754	5.90510508393045	6.37973440229487	6.49582785693327	6.56887405957585	6.62789272105156	0.594460274502152	0.041609195381146	0.255062467163282
Merged-chr15-99120456-2	chr15	99119956	99120956	+	644.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17D2|LTR|ERVK	-6389.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	3.22457343493877	2.73795812569365	3.01466220948738	2.81586462812622	2.48479461861075	3.08764609135795	-0.88189914325225	0.293754350159122	0.690424156263798
Merged-chr9-45520720-2	chr9	45520220	45521220	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-89488.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	3.60890723243764	3.61732192184226	3.58183481019727	4.44955505138919	4.63646027818965	4.33946881992636	2.7234598234863	4.54432821231342e-07	2.70088901350125e-05
Merged-chr2-75685612-4	chr2	75685098	75686098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	19065.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	6.83031741580347	6.76014493161441	6.5819903899743	6.48985998370319	6.81027468256506	6.45913738226283	-0.198818175075937	0.470104248196322	0.819289842432989
Merged-chr16-12772690-3	chr16	12772202	12773202	+	652.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38688.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	3.63527625692339	3.89870216633779	3.91933226577785	4.23527907732993	4.10461028989725	4.22353942934506	1.09367726007682	0.0312421536463095	0.213993836071956
Merged-chr2-84727666-1	chr2	84727166	84728166	+	1000.0	f1_balb.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-398.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	7.41048787573293	7.39653137414841	7.18670637375266	6.98077763417178	7.34965292619378	6.93485433092253	-0.33736160633699	0.194619787425444	0.582041564520222
Merged-chr8-41015469-4	chr8	41014998	41015998	+	756.69165	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1970.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.55640305826007	5.67746840400813	5.72916507638852	6.6037029067648	6.78890563215793	6.34841167292625	1.61548877993098	6.28428494118091e-08	4.69813819753622e-06
Merged-chr2-30594971-4	chr2	30594464	30595464	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030137)	promoter-TSS (NM_030137)	-80.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	5.94776510368396	6.01634297966605	6.12717926247996	5.95281499468452	5.80260002597161	5.76857748481793	-0.320734356513446	0.282284916439381	0.68023062053542
Merged-chr4-43382775-1	chr4	43382275	43383275	+	544.0	f1_balb.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	793.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	7.50283990127694	7.46428845462131	7.15964146309244	7.24393988746179	7.50620773021426	6.95484961657602	-0.183521125216658	0.497890167514709	0.833817084327451
Merged-chr17-29392577-1	chr17	29392077	29393077	+	589.0	f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	31663.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.96362979315964	2.75991727985361	2.84785963477688	2.96898034828825	2.79824518964213	3.15473763617928	0.552534518050295	0.439060282140965	0.800937323779458
Merged-chr15-83563566-4	chr15	83563072	83564072	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009775)	promoter-TSS (NM_009775)	-1.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	4.89838464133856	5.02082223556899	4.89927950128178	4.87607081199131	4.56718538098951	4.81530743613741	-0.43262988835172	0.275186496085117	0.672631395518784
Merged-chr9-121284674-3	chr9	121284180	121285180	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7508.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	2.26439540945523	2.29622310980127	2.10594878634119	2.41155180347997	2.22385887278161	2.45156071493022	0.901964488243428	0.31167564648432	1
Merged-chr11-70489839-4	chr11	70489320	70490320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15454.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	8.06313449441465	7.77925649636381	7.74130185771195	7.68861422901538	8.02073023841916	7.56270973208138	-0.132201524406811	0.599763850186853	0.881197893564797
Merged-chr1-165461099-4	chr1	165460621	165461621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-87.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	8.31384924444062	8.54845420546475	8.10384163692314	8.18130361801721	8.62444698135061	8.15250926392778	0.00744484461353511	0.976633314358269	0.994723308989508
Merged-chr12-110771081-4	chr12	110770563	110771563	+	906.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	33131.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	3.62375026748503	3.48315616149959	3.79114133746595	3.62412437330086	3.68652595585406	3.55102409659562	-0.0193268839235964	0.972547016860126	0.993868590220018
Merged-chr7-110117001-3	chr7	110116500	110117500	+	889.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5059.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	3.18245465756764	2.95435383398545	3.225028879114	3.29735678492974	2.87190853426692	3.00189608044465	-0.236842516406636	0.734020771280322	0.932325051544019
Merged-chr5-24447785-4	chr5	24447277	24448277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022418)	promoter-TSS (NM_022418)	69.0	NM_022418	64295.0	Mm.150098	NM_022418	ENSMUSG00000028958	Tmub1	2010004O20Rik|AB030183|Hops	transmembrane and ubiquitin-like domain containing 1	protein-coding	5.61906300812995	5.71871623643327	5.60659351421955	5.44107077707549	5.48569457513935	5.23811472754565	-0.471599440609873	0.153867631306656	0.522977732354242
Merged-chr4-135878007-2	chr4	135877507	135878507	+	868.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4161.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	5.04460928178876	5.09891520342402	4.72797736678481	4.61735508396435	4.75644755398122	4.62682864584339	-0.685578292387057	0.0909164787038586	0.401303822608385
Merged-chr8-120783860-3	chr8	120783363	120784363	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45224.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.99725174025728	3.6768101039437	3.72206531859917	3.81938247474878	3.80302783944454	3.7928136540829	-0.0177029482980369	0.973581215797981	0.994039095662068
Merged-chr11-90227670-4	chr11	90227153	90228153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21823.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.84205069883965	6.77177715878325	6.67154930785227	6.50897490116546	6.56767717432927	6.68194829757992	-0.291465177553519	0.25485539460622	0.651959356603444
Merged-chr14-121992773-3	chr14	121992185	121993185	+	998.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-27492.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	3.38453868617662	3.44254432435863	3.5834154509138	4.28380515522026	4.21706212485252	4.25695646542693	2.65439084763517	2.336644359868e-06	0.000114638858429184
Merged-chr14-10432324-3	chr14	10431830	10432830	+	851.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	21128.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	2.73099086039114	2.84689205153942	3.01807459443458	2.71601580360933	2.57970932689848	3.08945051073443	-0.29596007611149	0.700252178464757	0.920919335036368
Merged-chr7-44384631-4	chr7	44384137	44385137	+	793.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016663, intron 1 of 10)	intron (NM_016663, intron 1 of 10)	511.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	3.55658456954393	3.4893517964886	3.81821209443946	3.55420883702512	3.00697466786242	3.74531058713455	-0.540429464497073	0.431047369040541	0.796644918588116
Merged-chr9-47651617-4	chr9	47651126	47652126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	121274.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	7.39861224809607	7.03060916519044	7.17639629874521	7.04480905768463	7.13720768215162	7.09678765662048	-0.17732811893294	0.476213512196207	0.822449073721372
Merged-chr3-96244167-2	chr3	96243667	96244667	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1290.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	7.08436030561328	7.16658111465698	6.87309224786835	7.01351161043705	7.04777491928073	6.58255696724222	-0.218862528603564	0.421838776016234	0.790756682370678
Merged-chr4-74297113-4	chr4	74296596	74297596	+	953.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 3 of 20)	intron (NM_001356561, intron 3 of 20)	45217.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	3.67262274060556	3.87287597285733	3.72614019259858	3.93435912084088	3.75986907950634	3.45239874206018	-0.0820693244905325	0.885726080599389	0.973636976161493
Merged-chr4-109665281-4	chr4	109664749	109665749	+	923.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007671, exon 1 of 2)	5' UTR (NM_007671, exon 1 of 2)	123.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	5.47353173799929	5.72920617843524	5.70814450506275	5.9643494684689	6.1339848638844	5.96861612215191	0.697199174044934	0.0243205372275358	0.18363079107517
Merged-chr11-110427361-4	chr11	110426864	110427864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	28262.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	7.3818311512956	7.3510575324714	7.46561409769263	7.49229461327975	7.7696819301934	7.41781056272366	0.263476041793486	0.267982825096464	0.665158787855372
Merged-chr6-108065786-2	chr6	108065286	108066286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	741.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	4.58355299542317	4.18900001179493	4.50685895837446	4.69087658346109	4.69156020022951	4.48843222299572	0.487196803391868	0.271966832810192	0.669408969842249
Merged-chr4-155549011-3	chr4	155548506	155549506	+	893.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-13375.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.51638914215911	3.62288545643021	3.66362918532871	3.8683148826236	3.6106191220586	4.06842518757217	0.839303776909942	0.133957518040855	0.489359523952737
Merged-chr15-95802953-4	chr15	95802440	95803440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	12097.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	6.43422605465235	6.19775318349524	5.96750618694549	6.28367626757616	6.2496876449751	6.1683791245726	0.0200721065358745	0.945960700661193	0.98796006280508
Merged-chr2-129602068-4	chr2	129601560	129602560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	6598.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.53238738922335	5.5269005737796	5.58800162390835	5.18475601811284	5.57670357972693	5.4823091139953	-0.223070818250831	0.51364471937399	0.842702640331072
Merged-chr2-167351097-4	chr2	167350596	167351596	+	975.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1918.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.03233457675729	6.8175436726023	6.5298203311149	7.00170982995971	6.99542216259722	6.36971319585018	0.0238970847526635	0.938847772827104	0.986550175078409
Merged-chr2-167907880-2	chr2	167907380	167908380	+	656.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24447.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	2.34275158952438	1.99943338466221	2.4528129901543	2.37768228492804	2.16239836773623	2.46495533988886	0.392257590119058	0.683512684737966	1
Merged-chr2-45194480-4	chr2	45193953	45194953	+	970.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77011.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.01900091693737	7.01845449551244	7.07191709543409	7.03529238708984	7.2981273729528	7.12970766233131	0.195465987023615	0.418491513255747	0.788591657834186
Merged-chr14-122852926-3	chr14	122852414	122853414	+	860.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-60116.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	3.55373308389187	3.78572199277469	3.51423676889442	3.39368417911856	3.43664292014856	3.47391050670375	-0.710208272099993	0.221263208304304	0.615748128313864
Merged-chr7-25827394-4	chr7	25826892	25827892	+	883.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10862.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	3.2479433813578	3.11093073553653	2.97180180479124	3.22541181172068	3.07180886900905	3.22704872862949	0.227549248557282	0.729632123057988	0.930635866770147
Merged-chr18-14681909-1	chr18	14681409	14682409	+	1000.0	f1_c57bl6.idr	intron (NM_009280, intron 1 of 10)	intron (NM_009280, intron 1 of 10)	1005.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	6.18330006308472	6.403844654671	6.09934183863975	6.09238992632403	6.18669405308485	6.2242718103904	-0.12723464434218	0.657507629442948	0.904798742244684
Merged-chr9-63556530-4	chr9	63556029	63557029	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	45964.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	5.90410784918839	4.6528026125576	5.00630973387694	6.46096763559621	5.91671164789407	4.80374224342958	1.03549597553323	0.343113153145291	0.732007570045469
Merged-chr6-137688318-2	chr6	137687818	137688818	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39033.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.58696503471282	3.08681158983987	3.31493611727209	3.2435205471217	3.0583480857032	3.33055341539925	-0.553235229098065	0.40500683768836	0.779908884056912
Merged-chr19-4856340-3	chr19	4855839	4856839	+	922.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019861, intron 4 of 13)	intron (NM_019861, intron 4 of 13)	1210.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	4.92865469691139	4.66712168559182	4.98223232879975	4.73165646201854	4.82288467063169	4.75635474466058	-0.196131070822005	0.623054002008307	0.891251075175817
Merged-chr5-20792224-3	chr5	20791667	20792667	+	662.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 8 of 17)	RLTR17|LTR|ERVK	89957.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.5334336637188	3.41713197568071	3.56119852382286	3.32332566912714	3.03957042196885	3.05545302720745	-1.47032360661766	0.0240970998340494	0.182577989709669
Merged-chr11-79877368-4	chr11	79876863	79877863	+	887.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	85024.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	6.22775629919597	6.28788387320758	6.24811204439519	6.00004041457189	5.95294400755406	5.98364271801401	-0.473421017170224	0.0915701266853445	0.402843395184502
Merged-chr11-8601773-2	chr11	8601273	8602273	+	876.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	62762.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.59322808893177	4.7327107206758	4.70068301804393	4.71002027640756	4.5076889241193	4.60679855924234	-0.164761522461539	0.68852521591764	0.9172299553909
Merged-chr2-60124841-4	chr2	60124341	60125341	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	899.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	7.98091717040418	8.09277084012193	7.84329797513487	8.03526077024521	7.96155408140559	7.60834922061687	-0.130451910491925	0.583101252154363	0.873907285988058
Merged-chr16-4879317-4	chr16	4878810	4879810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	CpG	541.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	8.15852623917002	8.28647492138757	8.20528578985247	8.34914823369133	8.47185688578727	8.19501348028625	0.182436371304782	0.389998698805413	0.769411213081462
Merged-chr11-70844228-2	chr11	70843728	70844728	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	-533.0	NM_001291143	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	4.96505664061913	4.83252797416154	4.85144902071503	4.86503509005167	4.72360694087931	4.72277268880219	-0.257704998353831	0.507886684618921	0.839513705470194
Merged-chr19-32311230-4	chr19	32310719	32311719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	38097.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.34496628531549	4.17986990206733	4.42916822135384	4.20604780609695	4.20755488082964	4.32745433852622	-0.194848616226503	0.669759085305949	0.909740802307883
Merged-chr2-71328962-4	chr2	71328487	71329487	+	897.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	38567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.6897761728911	5.0040078706458	5.33192268321466	5.47694169872276	5.58963885375352	5.51621685954961	0.293007426877193	0.437986911256058	0.8003671068918
Merged-chr17-24142300-2	chr17	24141818	24142818	+	747.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-724.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	4.55914452547574	4.62210055056189	4.50069842573836	4.64869748583711	4.8700330171854	4.28645984560423	0.180156574807701	0.689018277721327	0.917235946766438
Merged-chr16-4586790-4	chr16	4586285	4587285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-7928.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	7.22132895173811	7.39460995708939	7.1850392351468	7.41186335286316	7.49758030655441	7.12826907380469	0.133917885193734	0.587633393731042	0.876017619062143
Merged-chr3-65891805-4	chr3	65891292	65892292	+	896.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	66457.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.78957499811683	2.78545664934437	2.99741780764688	2.86120710625013	3.18261032781961	3.06954399206714	0.915098833390407	0.195657142112507	0.583395666913835
Merged-chr1-88281556-2	chr1	88281056	88282056	+	656.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3977.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.31446144646714	3.36657586403519	3.51276107356697	3.15288319528823	3.44488536368683	3.53075063281585	-0.0448973755112075	0.941994886920507	0.987092317509512
Merged-chr4-33239935-3	chr4	33239414	33240414	+	842.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8873.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	4.54712358924448	4.2741379612086	4.22418305998675	4.89660836389427	4.30744766816479	4.90651312045192	0.887194277577215	0.0660861698674335	0.335503235041452
Merged-chr11-70655955-6	chr11	70655457	70656457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-2177	-1219.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	8.0849554532154	8.08343636298646	8.11292734087113	8.08267914971345	8.2990305136368	8.08531261825979	0.100403288212931	0.635388983337157	0.89649427032154
Merged-chr4-12140288-4	chr4	12139786	12140786	+	941.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_028226, exon 1 of 3)	5' UTR (NM_028226, exon 1 of 3)	169.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	4.93215074761858	5.10366520954024	4.70513619373673	5.20724802870155	5.06786343916718	4.44475115490873	0.0570402097800805	0.89988977172753	0.976728292075907
Merged-chr3-100160799-4	chr3	100160266	100161266	+	988.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175552, intron 2 of 26)	intron (NM_175552, intron 2 of 26)	1641.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	5.25220042614406	5.42372974682887	5.49091553124395	5.49564408397356	5.29234475917111	5.4384698009448	0.0370262349182215	0.913486788325115	0.980690639214464
Merged-chr12-12288067-2	chr12	12287567	12288567	+	763.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25928.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.91879965276304	6.23722157647303	5.98547769303532	6.36060846830537	6.57846673080341	6.1401597532433	0.541002267207697	0.0758676210318122	0.362566633737632
Merged-chr9-53248200-4	chr9	53247709	53248709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029936)	promoter-TSS (NM_029936)	-97.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	5.96225653206305	6.39521056482378	6.14749666895928	6.19896854902353	6.68159041238527	6.16446726848176	0.330338975517593	0.307202567929507	0.703285276522147
Merged-chr11-118146552-4	chr11	118146037	118147037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17318.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	8.97059218209631	8.93746834542654	8.58821293653058	8.35839346326763	8.70403498636423	8.27025137849487	-0.527892585408954	0.028163062969324	0.200667249833149
Merged-chr6-28864804-4	chr6	28864342	28865342	+	978.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-33095.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	4.7443373183528	4.66522481655025	4.76678842072079	4.72034696628708	4.7625332764509	4.8320535215506	0.10758182870386	0.784732187480052	0.947746351052687
Merged-chr2-25549095-2	chr2	25548595	25549595	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2155.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	3.15481379190235	2.92459689940588	2.89297532711834	3.21530247766283	3.36989414117114	3.2164117760196	1.18309273673116	0.0821046354596195	0.379100078093559
Merged-chr2-90544003-2	chr2	90543503	90544503	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	36644.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.29125934737905	6.11902682780781	6.36567443104024	6.31272590751717	6.09545850933092	6.36971128482342	-0.00124732703197875	0.996528823198331	0.999103012741004
Merged-chr12-70991954-4	chr12	70991468	70992468	+	964.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045055, exon 4 of 4)	non-coding (NR_045055, exon 4 of 4)	17345.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	5.44506266320354	5.5195479755807	5.51296251485416	5.77204839603481	5.76219551174411	5.9783588859454	0.630587724134337	0.046095374908887	0.271482443050586
Merged-chr9-123462000-4	chr9	123461509	123462509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001348167, exon 21 of 21)	3' UTR (NM_001348167, exon 21 of 21)	-16692.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	4.56158745975034	4.27533456056616	4.69231840586853	4.37364258169229	4.40801172495946	5.43768310687623	0.728125680902665	0.17524732237646	0.555038794164908
Merged-chr10-20312423-4	chr10	20311934	20312934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-35.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	8.89048334711985	9.21502038860573	8.8086166080279	8.83377420454711	9.15740216262278	8.889783184246	-0.0219014851026344	0.923848978143428	0.982786900372783
Merged-chr10-96376730-4	chr10	96376226	96377226	+	778.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150519.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.54192660810006	5.33030086531149	5.55865403612709	5.33580912024097	5.30478747673006	5.48220278634685	-0.207897321985381	0.538798911731549	0.855481812146676
Merged-chr16-30942642-2	chr16	30942142	30943142	+	586.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138790.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.28213610241714	2.99758117962763	3.07086148827931	3.13809625199906	3.26030649905311	3.37221213903927	0.556496381011422	0.394665095420251	0.772514857254462
Merged-chr18-83982077-2	chr18	83981577	83982577	+	890.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	104485.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	4.58023809345121	4.7081160009047	4.62937978440354	5.36572528513734	5.41893184729952	4.9070642325453	1.34768146120837	0.000764269603355739	0.0146596000820711
Merged-chr12-20233729-2	chr12	20233229	20234229	+	798.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	582050.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	3.18257006349778	3.09312885765419	3.40108248340231	2.86173392740817	2.73697745726889	3.70839777487621	-0.0789902354613066	0.949503548146678	0.988208623424793
Merged-chr9-35125505-2	chr9	35125005	35126005	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027030, intron 5 of 5)	intron (NM_027030, intron 5 of 5)	-8641.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	4.80484819117598	4.68834583894103	4.63376525320832	4.36258532290316	4.41774135798295	4.30675086021107	-0.857083010891592	0.0445114107477654	0.265898877557618
Merged-chr13-73468700-2	chr13	73468200	73469200	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	1317.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.90249363304866	3.59603279673761	3.63300093204754	3.97782924026826	3.894662340328	3.53006487932956	0.322365426243043	0.573953687827979	0.870439588393367
Merged-chr17-34307198-3	chr17	34306716	34307716	+	898.9111330000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	1349.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	5.29871408711289	5.04115865138489	5.07916164640739	6.03167055789381	6.4455731725093	5.59226153693349	1.73098179876185	5.07885782198756e-06	0.000224549203853316
Merged-chr2-145720335-4	chr2	145719835	145720835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19140.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.56121411241958	3.39715854622052	3.32559256730628	3.58722924204295	3.2522754134484	3.45561840681804	-0.000299700644934081	0.999607145312263	0.999920050950963
Merged-chr4-53196175-4	chr4	53195695	53196695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36300.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.41512478214529	6.51588567844199	6.62676459632763	6.54606521502652	6.69364917953871	6.09811205261213	-0.0525583393104126	0.860323216346281	0.967467627140602
Merged-chr9-110609576-2	chr9	110609076	110610076	+	969.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081340, intron 18 of 20)	RLTR49|LTR|ERVK	14817.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	4.04126027287889	3.9663619788461	4.34084572023672	4.24449386397369	4.01939390309378	4.28128002789055	0.181394102253559	0.712198909087623	0.924979269005305
Merged-chr11-97435271-4	chr11	97434752	97435752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14908.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	9.31860808896321	9.48964983862326	8.68890050500387	9.05612440695794	9.27704805782366	8.60577619952716	-0.272926062034068	0.349212368321016	0.737211397896543
Merged-chr7-46546668-4	chr7	46546189	46547189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 9 of 10)	MTE2a|LTR|ERVL-MaLR	93118.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	4.19999487668118	4.1174975994713	4.61122855625998	4.02262084465351	3.97837788711263	4.37192354223742	-0.52353778428075	0.30099979703997	0.697687645888401
Merged-chr8-126516829-2	chr8	126516329	126517329	+	995.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41764.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	5.71554045458507	5.86679217502595	5.93021072519577	5.72348502205023	5.59807187858355	5.58304236207722	-0.362389655862851	0.245799594208841	0.642821080898342
Merged-chr12-32820996-6	chr12	32820433	32821433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021524, intron 1 of 10)	CpG	598.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	8.70668192375607	8.5631528221562	8.16871452492253	8.59332789356097	8.63731374465371	8.25156779842038	0.00653126330086588	0.979056694199715	0.995160277495735
Merged-chr5-53378808-4	chr5	53378310	53379310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111704.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	3.19959345006298	2.7913172376771	2.7121161024636	2.87896253156247	2.84945341573626	3.03908366751532	-0.00818331118850181	0.991327516908203	0.998222399926149
Merged-chr3-14592313-3	chr3	14591809	14592809	+	704.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007892, intron 3 of 7)	Lx3A|LINE|L1	13638.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	2.84748141842565	3.42215972283204	3.24105081920055	3.13036062314966	3.16657738846144	3.25635631706999	-0.046172381975871	0.947545405994605	0.988008807662239
Merged-chr19-9897821-2	chr19	9897279	9898279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	1754.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.78254066225427	4.96938785711829	5.31372962297213	4.61782205967806	4.99900813819676	4.86200235605956	-0.412183063567075	0.325802265295629	0.718259738003882
Merged-chr3-27984098-4	chr3	27983589	27984589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008875)	promoter-TSS (NM_008875)	-82.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	6.74450476144623	6.86577811112472	6.63813928472567	6.90784735359315	6.8313680758033	6.53799557237746	0.0293259855640939	0.912285672806678	0.9803366405399
Merged-chr15-103255381-4	chr15	103254857	103255857	+	957.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008685)	promoter-TSS (NM_008685)	82.0	NM_008685	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	3.53678315078788	3.31655790275864	3.49287169943695	3.51729675902125	3.19749909589457	3.50999750439194	-0.151825064933426	0.803576119152322	0.95351077179348
Merged-chr7-125594059-4	chr7	125593538	125594538	+	932.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9391.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.2789790027951	3.42127744832415	3.58722424684822	3.79587676774081	3.89025391039765	3.76295869254931	1.39309570101563	0.0146961483928631	0.130742768680995
Merged-chr16-17720868-2	chr16	17720368	17721368	+	721.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	2032.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	6.4700454436339	6.10791154265684	5.99310456809602	6.18785504897061	6.11555144956501	6.12366639698984	-0.124651310510696	0.680395818401613	0.914217125833247
Merged-chr4-40854820-2	chr4	40854320	40855320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022305)	promoter-TSS (NM_022305)	-283.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	4.70552914562619	4.47128669131463	4.62674427323002	4.62545660301685	4.64837508496777	4.43753674678975	-0.0537702903791189	0.898867529266343	0.976432549466174
Merged-chr4-115856491-2	chr4	115855991	115856991	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 4 of 14)	intron (NM_001285487, intron 4 of 14)	17293.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	3.57949606129276	3.59585897226171	4.01260802613466	3.70141219159869	3.56216795804123	3.64998987594838	-0.329616370480862	0.562065220924477	0.86560636450104
Merged-chr10-127596901-4	chr10	127596399	127597399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24249.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	9.16878593876887	8.90332594708355	8.58219301972709	8.83224098538817	9.04904352458219	8.65283057442205	-0.0729355323482353	0.768099689690611	0.942808405195185
Merged-chr5-103753564-4	chr5	103753057	103754057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133919)	promoter-TSS (NM_133919)	-605.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	8.70762446274281	9.00651647253875	8.67794167429948	8.74258051072264	9.17231433197954	8.67886363997223	0.111030431497992	0.647209750206245	0.90127575470547
Merged-chr13-95884200-3	chr13	95883705	95884705	+	584.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	ORR1D2|LTR|ERVL-MaLR	7717.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.14940142823303	4.35592093844985	4.27797084852132	4.01979312829388	3.53489249493672	3.6394358708194	-1.57365349228225	0.00440085104840128	0.0559404237756452
Merged-chr17-48336598-2	chr17	48336098	48337098	+	698.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9803.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	5.21329568882102	4.95854662457052	4.81429877826288	5.43244646804371	5.46472288184315	5.1152852084767	0.693067071053582	0.0691567359134822	0.344038279792654
Merged-chr6-89632494-4	chr6	89631988	89632988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11500.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	4.90324693740187	4.40677318586933	4.4756702318854	4.80752573899569	4.67453470103566	4.82888428765938	0.340289570749277	0.436479537053496	0.799486950869076
Merged-chr5-113673124-2	chr5	113672624	113673624	+	965.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22734.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.67118626075064	4.67949683241738	4.82042125398543	4.75275976304657	4.41175573587515	4.95437262258935	-0.0213131058655026	0.960474544608042	0.990385598955896
Merged-chr14-51896023-3	chr14	51895527	51896527	+	983.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039676, exon 4 of 4)	3' UTR (NM_001039676, exon 4 of 4)	2417.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	3.60453800571469	3.73704655121312	3.5358391939516	3.0636579884185	2.72321671731143	3.01411784255346	-3.56613203617944	2.03823363084068e-05	0.00074222032365423
Merged-chr18-62172902-4	chr18	62172402	62173402	+	996.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7079.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.02764064308508	5.12877694327345	5.30633366714205	5.04661327387954	5.34930334189693	5.11284043956033	0.0706485150095668	0.848391799616023	0.964356989789491
Merged-chr17-33919596-4	chr17	33919122	33920122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020625)	TTS (NM_020625)	144.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	8.47137426357913	8.59361914075607	8.09979102418918	8.11124432903268	8.73661626579089	8.11191328821962	-0.063355283368386	0.82034444932557	0.957607510268964
Merged-chr11-121562773-2	chr11	121562290	121563290	+	826.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029878, intron 17 of 38)	intron (NM_029878, intron 17 of 38)	-43448.0	NM_178763	319530.0	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	2.60312025657385	2.59401778724981	2.78194285135416	2.49871736456424	2.57142808111687	2.67457115649808	-0.436264527418907	0.568817248958192	1
Merged-chr19-47915506-2	chr19	47915011	47916011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	3788.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	2.60705309612548	2.63675714756039	2.80346558357613	2.52266680946795	2.84021283319104	2.87563421988043	0.389531144272598	0.612306889666813	0.886694626735313
Merged-chr13-24445415-3	chr13	24444909	24445909	+	815.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	30287.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.68794197592878	5.90271493253259	5.8030802048222	5.96459405315618	5.9823986590695	5.83951894157371	0.236770895806326	0.43418067170071	0.798234723057794
Merged-chr13-113418319-4	chr13	113417819	113418819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84525.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.89514999659929	6.8951428493283	6.79233285888072	6.64207751462234	6.85132847897898	6.88026149705561	-0.109187637981641	0.664609650219424	0.907708448846662
Merged-chr15-74934953-3	chr15	74934464	74935464	+	645.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-20087.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.56379218689473	4.55183859084062	4.82862883871649	6.00784786901205	6.11420370835212	5.71750335759758	2.70434362260304	2.49666572481771e-13	5.3131089931108e-11
Merged-chr18-39317651-1	chr18	39317151	39318151	+	710.0	f1_c57bl6.idr	intron (NM_001361073, intron 20 of 21)	MTE2b|LTR|ERVL-MaLR	169594.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.32397155716171	2.62947180972643	2.477556510522	2.58910856066961	2.5719869611538	2.74024014586971	0.853709123139781	0.295256339495194	1
Merged-chr4-63409493-4	chr4	63408990	63409990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6045.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	5.6522495895536	5.27405866867028	5.10570265961163	5.70548664680086	5.19521905466492	5.0588673331355	-0.0327811502020958	0.935841250418497	0.985953563515988
Merged-chr8-81342463-4	chr8	81341956	81342956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-106.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.93178346833004	6.0036304915871	5.76543289690961	4.62648145063338	4.42004161032615	4.98476188553494	-2.57739371383168	2.69609721439725e-11	4.03483555783393e-09
Merged-chr11-115492909-2	chr11	115492413	115493413	+	669.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136931, exon 1 of 1)	non-coding (NR_136931, exon 1 of 1)	-1099.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	4.78765601142314	4.43647808377017	4.7760834215677	4.54580766025928	4.59629509906334	4.39301062474664	-0.367274296692952	0.398993674241977	0.775565728016755
Merged-chr13-30987899-4	chr13	30987383	30988383	+	971.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13836.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	4.17649958388796	3.95328369977146	3.90612019070799	4.16231098018737	3.88091149614857	3.81657679328428	-0.17127604811492	0.740921626305094	0.934712654423072
Merged-chr2-61579581-4	chr2	61579080	61580080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	994.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	7.87644199730377	7.98632657858958	7.00554805829563	7.90123777348829	8.21892326720906	7.41331688413189	0.276827251200922	0.608806886054961	0.885034476656438
Merged-chr10-42272638-2	chr10	42272138	42273138	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	4104.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.31474812983846	3.99293757372671	4.38921541199223	4.34803042201437	4.55291713681018	4.86618218118223	0.925984744967363	0.0525522587861932	0.293218557572693
Merged-chr16-30947956-1	chr16	30947456	30948456	+	552.0	f1_c57bl6.idr	Intergenic	Intergenic	133476.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.22869794479018	4.57834890868952	4.40920439336652	4.23307995848777	4.01469406010291	4.18625204167911	-1.65878493387719	0.00101366824063929	0.0182131951991177
Merged-chr17-34030766-2	chr17	34030272	34031272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 2 of 7)	intron (NM_001077709, intron 2 of 7)	918.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	6.5407776613777	6.21366439396966	6.2285415049709	6.20209614918886	6.29841013462316	6.30902101161197	-0.118527229372211	0.678175636790755	0.913379457468915
Merged-chr13-44415305-4	chr13	44414860	44415860	+	980.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-24367.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	6.27489124890705	6.90919608188507	6.72827944364176	6.7886829913449	6.9927800516879	6.7399746680614	0.287539885074909	0.333856830059069	0.724614206827878
Merged-chr3-87527307-3	chr3	87526816	87527816	+	873.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012051, exon 2 of 5)	exon (NM_012051, exon 2 of 5)	1738.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	4.55021395717749	3.93286414198222	3.70054364802118	3.66158819626282	3.54942364829169	3.71731190700915	-1.49811435094612	0.0121293017486437	0.11510798295433
Merged-chr2-172345457-4	chr2	172344955	172345955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-122.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	5.19442712558471	5.26111992099657	5.4268667782181	4.97981230789185	5.00476660931897	4.90256397524459	-0.674146192369507	0.064073493849531	0.329853818983591
Merged-chr4-99185170-1	chr4	99184670	99185670	+	612.0	f1_balb.idr	Intergenic	Intergenic	-8764.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.20577125112564	5.39292107992028	5.1068442037263	5.36982767804722	5.40191675444546	5.5178802552997	0.350355979830762	0.313636188876935	0.708132564679568
Merged-chr4-32563762-2	chr4	32563262	32564262	+	981.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109661, intron 3 of 4)	MTC|LTR|ERVL-MaLR	7900.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.05708947879464	8.40578755620539	7.95641185736114	7.46617301655206	7.74933262166261	7.55820300529364	-0.798262067550521	0.00119406802954799	0.0206776300941997
Merged-chr4-118360572-3	chr4	118360097	118361097	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	598.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	7.23622582148151	7.7209566173221	7.30607725533534	6.03329490857961	5.94590573574556	6.02719552001749	-2.28485690103893	7.2187387664113e-16	2.35551692264922e-13
Merged-chr9-42995471-2	chr9	42994971	42995971	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359232, intron 22 of 40)	HAL1|LINE|L1	-51100.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	2.97424334644938	2.7939150756455	3.02589142862645	3.16201819921117	3.00574476462891	3.37495541766931	1.14022831001406	0.0992764454756849	0.42004541385646
Merged-chr14-30614641-1	chr14	30614141	30615141	+	735.0	f1_balb.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-4331.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.83320365938644	4.70264590797803	4.90412850902496	4.86500355539512	5.01603196115138	5.16714510858811	0.45888808183687	0.235184661215495	0.631443917750293
Merged-chr5-92442528-3	chr5	92441937	92442937	+	623.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-7238.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	6.13043302944892	5.98395138162454	6.23803052650876	6.42217828872652	6.65333368427403	6.21508436839258	0.56390146831152	0.0550767681889098	0.301531468685179
Merged-chr7-115001310-2	chr7	115000809	115001809	+	789.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	50035.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.05084073213081	3.0796867317069	3.1219148219675	2.87921916488337	2.91215969249749	3.13672517248931	-0.499761486700893	0.458202510539344	0.812940883536061
Merged-chr3-146109114-1	chr3	146108614	146109614	+	591.0	f0_balb.idr	Intergenic	B4|SINE|B4	-1078.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	3.56479293815448	3.39943762077994	3.49520216494512	3.08263587567428	3.12227808305664	3.51325710353705	-0.963287793737696	0.133830417247804	0.489097037875759
Merged-chr2-18884520-4	chr2	18884023	18885023	+	875.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-82705.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	3.16647163912113	3.27294880974426	3.59891899278272	2.99369246545796	2.87286173253536	3.20465469117538	-1.43971377473256	0.0378687584676492	0.240680083606489
Merged-chr9-78427546-4	chr9	78427066	78428066	+	985.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15671.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	6.71578430026894	6.80449680628521	7.01715499364274	6.71330406949062	6.91453034900338	7.09920423198084	0.106856172585457	0.687496269745071	0.917163788391121
Merged-chr6-33405698-2	chr6	33405198	33406198	+	862.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 7 of 9)	intron (NM_001347089, intron 7 of 9)	156570.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	2.77203667393155	2.88284868378634	2.85723268169412	2.57430800478473	2.5599260582302	2.62021961153702	-1.44084660997894	0.0591952075706073	1
Merged-chr8-84893903-4	chr8	84893383	84894383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	38.0	NM_001044744	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	4.08498752222179	4.13885694119795	3.96780870959321	3.9538958874365	3.81014135638728	4.03701313557894	-0.423953461711647	0.394683536815732	0.772514857254462
Merged-chr2-76673126-4	chr2	76672635	76673635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-37.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	6.6310341532162	6.94439932821407	6.50468905533753	6.76392295068899	6.85501948780378	6.94494031320574	0.213293225833491	0.432549653588956	0.797386699146392
Merged-chr7-16782153-3	chr7	16781581	16782581	+	950.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009201, exon 1 of 9)	exon (NM_009201, exon 1 of 9)	735.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	3.89749882669929	4.14013092487358	4.12563241581947	4.39686935450553	3.72201047616424	4.23929343093699	0.253373959888707	0.64038566166799	0.898479245541262
Merged-chr8-68880552-4	chr8	68880035	68881035	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008509)	promoter-TSS (NM_008509)	-20.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	5.86963591168558	5.79535361577252	5.8060135502901	5.8320615701141	6.20675514099399	5.7077144648582	0.220934658359975	0.494290380633747	0.831912336248161
Merged-chr14-65097701-3	chr14	65097211	65098211	+	871.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018788, intron 1 of 6)	CpG	395.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	6.68554770193579	6.76922393076528	6.6318884416161	6.61571933209186	6.57525289124911	6.90158400620608	-0.00646192228828073	0.98047762904331	0.995512982807197
Merged-chr12-112829556-4	chr12	112829043	112830043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359292)	promoter-TSS (NM_001359292)	-22.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	6.26023443205188	6.50881741976455	6.37789474331936	6.14625030118381	6.36833614813944	6.32279943045141	-0.170121881592414	0.544041906470222	0.857551302506722
Merged-chr7-5014792-4	chr7	5014298	5015298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-70.0	NM_001110328	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	7.63321612429266	7.77933169205812	7.60784441449151	7.81536925944618	7.91778338148131	7.63587030511319	0.176488296449119	0.435911714598388	0.799403653016169
Merged-chr15-50745538-4	chr15	50745035	50746035	+	828.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	143514.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.66870068955514	3.83465285908744	3.83322490083575	3.41173177665353	3.29520056378165	3.65420170276166	-1.17834699998344	0.0432330965008963	0.261069337340562
Merged-chr11-21015107-4	chr11	21014674	21015674	+	991.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76150.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.10475636703727	5.98414491001714	5.77027192549656	6.08748696266035	5.89051120733574	5.90973749227948	-0.00802764743554993	0.978995046152687	0.995160277495735
Merged-chr7-30417869-6	chr7	30417407	30418407	+	909.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011662)	TTS (NM_011662)	1947.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	6.3870150692151	6.42355353806335	6.58047504473648	6.84592996507315	6.73510281020656	6.93886538838792	0.597732521813404	0.0212784635658874	0.168222080605676
Merged-chr12-40604288-2	chr12	40603788	40604788	+	590.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	158235.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.50727203113822	2.57705505606861	2.91687365645312	2.56323457098181	2.46647858850641	2.81867511405809	-0.295858051649894	0.712709351116557	0.925266716922386
Merged-chr11-97664251-2	chr11	97663751	97664751	+	975.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 1 of 19)	intron (NM_139311, intron 1 of 19)	839.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	4.37669288881018	4.33055357901445	4.45258940987161	4.54008291943104	4.12814872588364	4.81906588246543	0.327454612147078	0.494875420814319	0.832153667472614
Merged-chr16-8671702-4	chr16	8671198	8672198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	CpG	455.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	6.10509029395771	6.12149153667827	6.4111846398156	6.18534491894422	5.93041112075394	6.20745543863694	-0.178482207756535	0.549729389225266	0.86042385916162
Merged-chr11-78246194-4	chr11	78245681	78246681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009297)	promoter-TSS (NM_009297)	430.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	7.94864214774205	8.04760020196705	7.76619174175301	8.04124655787549	7.9925141179765	7.84818985696272	0.0494043135822598	0.823787729703709	0.958451755471188
Merged-chr17-83513846-1	chr17	83513346	83514346	+	923.0	f0_balb.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	487.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	7.73159211965302	8.02666543128281	7.61373183986905	7.98509028160226	8.22543006982077	7.97182597022883	0.371224386897852	0.122114828865422	0.467427117500877
Merged-chr9-32502621-3	chr9	32502110	32503110	+	744.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	38842.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	6.0816240467333	6.17200175763597	6.25853021787187	6.07454397571013	5.68923512708744	6.05021769883856	-0.395566728014125	0.196190245798987	0.583940557712492
Merged-chr19-59071607-4	chr19	59071096	59072096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4473.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.2212613338379	4.55328970735094	4.42864918795315	4.34552351401134	4.34404722218002	4.5364256811366	-0.0101847552725226	0.981953804732304	0.995885283313411
Merged-chr3-32397007-4	chr3	32396529	32397529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31364.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	7.43137247190231	7.49333877197978	7.37717419924613	7.56507326554686	7.3846464510358	7.34572908361262	-0.000675129709901942	0.997649255074377	0.999535215906236
Merged-chr10-122534804-5	chr10	122534281	122535281	+	935.711121	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35110.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.61782514809937	7.12136019962749	6.68802666099086	6.7535617988234	7.26058859025613	6.35015381283131	0.0355251652962081	0.917232073455279	0.981588017376699
Merged-chr11-107402384-4	chr11	107401892	107402892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	68328.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.54551005295873	4.56003986703456	4.52757709716298	4.52654664594854	4.36279303791609	4.82199099044494	0.0626101630483676	0.88591412672387	0.973636976161493
Merged-chr5-115276262-1	chr5	115275762	115276762	+	580.666687	f1_balb.idr	Intergenic	B3|SINE|B2	-3367.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	2.50937070924841	2.46834208745991	2.33053607844672	2.51271489410383	2.36461119935091	2.60108907481496	0.308698262359703	0.706124246137079	1
Merged-chr4-59468796-2	chr4	59468296	59469296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30163.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	3.89162487287076	3.91162695110332	4.16588986145925	3.81091110829624	3.66259383018133	4.27371096962624	-0.176101832239011	0.749422037997119	0.937332345328427
Merged-chr1-184700911-3	chr1	184700412	184701412	+	627.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11585.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	2.361245566882	2.44160135954927	2.52806103496686	2.14218103875275	2.18885370687673	2.28449713628124	-1.69947869172682	0.0567818495291836	1
Merged-chr11-110379812-4	chr11	110379300	110380300	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19302.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.22459238870065	4.4955745138782	4.19575569533243	4.31266280539994	4.04687195479737	4.26447183315055	-0.303457039378953	0.522658929811239	0.847682942091387
Merged-chr7-139400488-4	chr7	139399989	139400989	+	941.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-5.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.65779500315865	3.5857352526462	3.57350070232082	3.50832990177282	3.37365112994009	3.10530509348252	-0.976134548249049	0.122771198326254	0.468818075737998
Merged-chr3-95993112-2	chr3	95992618	95993618	+	878.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	2721.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	6.08477783049997	5.88326800357069	6.06026625934048	6.17051925539856	6.12153320525013	6.05390027230296	0.187768917668203	0.515923580178386	0.84400489988974
Merged-chr9-109083267-2	chr9	109082767	109083767	+	587.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183250)	promoter-TSS (NM_183250)	771.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	4.11466422261492	3.83165827009068	4.00032040411315	3.98438821785576	4.12952970235721	4.20790592134933	0.354465451977216	0.475342225340182	0.821899629825777
Merged-chr13-75840974-1	chr13	75840474	75841474	+	752.0	f1_balb.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	1088.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.26679673806578	4.56052571635287	4.47432942647969	4.21081701569995	4.14157842441721	4.0887821144307	-0.778684716983508	0.0931722480737387	0.40657919757719
Merged-chr1-88282348-6	chr1	88281791	88282791	+	829.438904	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-4712.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.6562697935898	3.49039361898227	3.57036175452433	3.56727585929309	3.57132987528664	3.74331676464758	0.178175979343425	0.74952962121959	0.93736827370126
Merged-chr11-97434075-2	chr11	97433575	97434575	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2A1|LINE|L1	-16085.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	5.04342075558018	4.6585381131782	4.5475466631935	4.25586158816059	4.41308352511191	4.61493714861242	-0.835008755705113	0.0641619422176481	0.330043699805024
Merged-chr19-44069778-4	chr19	44069260	44070260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164359)	promoter-TSS (NM_001164359)	15.0	NM_001164359	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	7.28138759864185	7.21608553365656	7.1556240247088	7.1463020491206	7.24108948573052	7.09905780520034	-0.0802798280875194	0.731089816377615	0.931307266655708
Merged-chr7-110122982-4	chr7	110122472	110123472	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009516, intron 1 of 10)	CpG	913.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	5.63135801392615	5.8446354289468	5.30525183193368	6.04147413356842	5.89601570710797	5.50467927653493	0.391333932706091	0.276713187034658	0.674041208769616
Merged-chr6-54952736-4	chr6	54952232	54953232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	18929.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.71533464178881	5.76805471174359	6.07788367344055	6.11489890296582	6.23516882543933	6.40747550869103	0.692063441442649	0.023016838892986	0.177331956537739
Merged-chr14-63130012-6	chr14	63129490	63130490	+	803.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	7528.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.89550668297671	9.32013056073734	8.78641782800049	8.85738120618299	9.24649456518272	8.69260747351019	-0.0915023732319844	0.725535752087916	0.929698613727862
Merged-chr17-71230245-2	chr17	71229745	71230745	+	674.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 5 of 19)	intron (NM_001357791, intron 5 of 19)	25591.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.21610414034399	3.42097787924181	3.49199411773997	3.12884268322454	3.1018067076904	3.4055007414336	-0.677200178573897	0.288453969844829	0.685895051202827
Merged-chr13-17803611-4	chr13	17803101	17804101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	1496.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	7.10713281809082	7.41919117015032	7.35840026869804	7.42143750903268	7.12361576221393	7.46727224618437	0.057836697805003	0.819455845293491	0.957283576025177
Merged-chr16-38712898-4	chr16	38712380	38713380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020260, exon 1 of 12)	5' UTR (NM_020260, exon 1 of 12)	155.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.93110775860169	5.51043054681688	5.88601463722308	6.84388265697227	6.93003693194217	6.93927326430923	1.84883777807929	2.24951348152551e-10	2.76889819187536e-08
Merged-chr15-100082174-2	chr15	100081674	100082674	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	43510.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.76268930920442	6.76095929435117	6.50705212336184	6.98164379532466	7.06954955547644	6.32389714746003	0.246171493464931	0.426572292259208	0.793840707522572
Merged-chr3-121891646-3	chr3	121891100	121892100	+	806.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61629.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	3.55240845369163	3.67826609337527	3.45867501133157	3.64151003585329	3.63095316329579	3.6414104033647	0.228669776626673	0.682373082087604	0.915072334923495
Merged-chr16-95833510-6	chr16	95833011	95834011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	65202.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.62471300956506	6.49876329413042	6.34474796682165	6.26292546570945	6.35967364699008	6.22023271495486	-0.349533093661615	0.203477316544055	0.593443412372862
Merged-chr13-101696063-4	chr13	101695572	101696572	+	885.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3442.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.86769477542409	4.96736310230406	4.88663282593276	4.69290794532578	5.35614022662564	4.91491096882097	0.268065445714097	0.523139633598713	0.848000018982857
Merged-chr19-53939551-4	chr19	53939046	53940046	+	846.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-4760.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	3.26841215468622	3.26593865599179	3.37716782880454	3.29328538289468	3.26489129929186	3.22235128386095	-0.161081079070947	0.791796965630947	0.94981786289531
Merged-chr1-157048321-4	chr1	157047796	157048796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60354.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.72959773527319	6.6946212726121	6.80624887225254	6.62708605666194	6.97439634346657	6.87913987068349	0.151927335099634	0.559541924109118	0.864986578702902
Merged-chr2-25334112-2	chr2	25333612	25334612	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029983, intron 2 of 12)	B1_Mus1|SINE|Alu	1369.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	3.46094295196353	3.2698094101942	3.32885859429855	3.17035341747059	3.04360502734743	3.45373697179506	-0.534256730187574	0.406785455891238	0.781073132890231
Merged-chr2-25254786-2	chr2	25254286	25255286	+	868.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177344)	promoter-TSS (NM_177344)	628.0	NM_001252541	78797.0	Mm.40020	NM_178239	ENSMUSG00000006471	Ndor1	4930447P04Rik|NR1|Ndor|Tg(UBC-cre/ERT2)1Ejb|Ubc-cre	NADPH dependent diflavin oxidoreductase 1	protein-coding	6.19006103886327	6.43021912794703	6.1806607258206	6.28635635719772	6.44349535151731	6.17625591795151	0.0621269990393822	0.828298121502445	0.959674411441762
Merged-chr3-51270165-4	chr3	51269669	51270669	+	903.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6592.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	6.11202502531214	5.73709132849273	5.92879824391356	6.09500316587775	6.36646912752315	5.60818971447818	0.242469593972967	0.490152633641432	0.830031090218234
Merged-chr4-135318190-4	chr4	135317691	135318691	+	926.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35023.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	3.07259159560228	2.79843390333893	2.94076552154679	2.8537622325641	2.72069464595557	2.89327484358636	-0.61558395352917	0.390185892588643	0.769532774366338
Merged-chr10-20770676-4	chr10	20770174	20771174	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVL-E-int|LTR|ERVL	-45596.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.85742452423484	7.64361461987849	7.40621562142476	7.86195280918762	8.05865561281006	7.44086753525643	0.239699973988842	0.37855440573691	0.761004928427842
Merged-chr10-44607472-4	chr10	44606972	44607972	+	974.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148724.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.4056740315835	5.86855562893304	5.27562429066721	5.4964442959927	5.53872819610222	5.49913589013223	-0.0832761271620773	0.817421571273733	0.956767881392089
Merged-chr11-102294755-2	chr11	102294255	102295255	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001098836, intron 2 of 12)	intron (NM_001098836, intron 2 of 12)	1874.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	2.77739148737215	2.80561278338616	3.04406063968855	2.89571901849833	2.96315329871498	3.11539792675286	0.559326469322697	0.423906491227395	0.792272050905538
Merged-chr10-75229227-4	chr10	75228735	75229735	+	899.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 3 of 18)	URR1A|DNA|hAT-Charlie	16845.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.64128211242341	4.61873495303858	4.52847339444825	4.78995706693831	4.68071818551249	4.90645798242031	0.437890610604169	0.280498288478414	0.678459974643525
Merged-chr3-146652902-2	chr3	146652402	146653402	+	852.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1585.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	3.48716948431798	3.34810037833717	3.27143422426542	3.27050390696066	3.17980349958531	3.60808105116077	-0.0690995840849166	0.912899611703399	0.980493376461863
Merged-chr10-127479989-4	chr10	127479464	127480464	+	898.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-21722.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	5.14525442965369	5.00954584370756	5.31005235328877	5.02269615672577	5.159830167446	5.05087756807498	-0.141917030903179	0.698961536742981	0.920502541060903
Merged-chr1-16797974-4	chr1	16797427	16798427	+	901.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109471.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	5.31414190732802	5.25414652870121	5.31609538108646	5.42298935799436	5.31398589452589	5.11231555137452	0.00617955196692242	0.985857518393382	0.996976572562914
Merged-chr10-122535334-4	chr10	122534833	122535833	+	979.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34558.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.358607731207	6.86880126608318	6.47787190926434	6.44121811503126	6.90186062507335	6.11714364332738	-0.0789389858671021	0.816181718198328	0.956616423430214
Merged-chr17-36020158-2	chr17	36019658	36020658	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008207, intron 1 of 5)	B3|SINE|B2	402.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	5.78700255618479	6.06054059578026	6.05264502490582	6.01428028393974	6.38373558519386	5.97526618945256	0.309617048871908	0.324441320547436	0.717544999689449
Merged-chr5-139459943-2	chr5	139459443	139460443	+	750.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 1 of 4)	intron (NM_028469, intron 1 of 4)	591.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	5.19962934649948	5.28265170031754	4.7443878967303	5.24145266937556	5.4787676346672	5.23451066992746	0.441081513311065	0.258202099320922	0.655659776470938
Merged-chr2-174674180-4	chr2	174673681	174674681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30647.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	3.58776140384365	3.67289692415436	3.66483531476376	3.90864212691523	4.35728994763133	4.09433412728766	1.56523173169261	0.00356553658447865	0.0478363702227184
Merged-chr11-55451451-2	chr11	55450951	55451951	+	711.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	9757.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	3.37093994272509	3.07551170622715	3.20567612563923	3.13895045417066	2.84532457281584	3.16250436896628	-0.756981033113928	0.26885081880898	0.666007887447011
Merged-chr8-126665932-4	chr8	126665397	126666397	+	960.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72461.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.1149884898494	5.99118572016219	6.01710943456173	5.46115503955984	5.28790764078795	5.55193815442228	-1.12920549068878	0.000330608212817722	0.00755126219383393
Merged-chr10-10321341-4	chr10	10320831	10321831	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150983.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.92548439837048	4.89941289757153	5.15003421356487	4.34818041861631	4.16428160731598	4.31318124843773	-1.76392667719032	4.48071214070447e-05	0.00144172890875382
Merged-chr1-165769868-2	chr1	165769368	165770368	+	748.099976	f1_balb.idr|f1_c57bl6.idr	exon (NM_011804, exon 2 of 4)	exon (NM_011804, exon 2 of 4)	6110.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.97653522123225	6.20810770581122	5.94248497204347	6.0609982809136	6.0925871403983	6.05062468673027	0.0250781336935096	0.93172849908041	0.984929477721491
Merged-chr5-115479782-2	chr5	115479282	115480282	+	858.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001167691, exon 4 of 5)	exon (NM_001167691, exon 4 of 5)	4515.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	4.65790445370318	4.62724572702176	4.11665158711963	4.17374783713642	4.10057631954453	4.0296484804164	-1.05835959552699	0.0310984601470899	0.213501705603883
Merged-chr8-106138270-4	chr8	106137768	106138768	+	885.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040344, exon 5 of 5)	non-coding (NR_040344, exon 5 of 5)	-1294.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	4.65601565288702	4.54407808663215	4.8317025056962	4.72297601018438	4.51140526829613	4.45967000514135	-0.24707834710293	0.559845824727775	0.86514349306247
Merged-chr11-77408821-2	chr11	77408321	77409321	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291190, intron 4 of 13)	ORR1C1|LTR|ERVL-MaLR	-55092.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.41484547594696	4.58751404290413	4.68023065899303	4.46071992866427	4.18517767212952	4.95108523098022	-0.00488002470985146	0.991929748084795	0.998351393644539
Merged-chr5-64370471-4	chr5	64369988	64370988	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	97454.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.4845887639609	5.49320375993494	5.47983794783685	5.15947201730272	5.39883516264307	5.5699438573603	-0.203812930316396	0.551881365172444	0.861540020511223
Merged-chr17-10940366-2	chr17	10939866	10940866	+	755.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	100007.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	2.60770034394099	2.62824943504039	2.72704910773163	2.60156734434325	2.57656586305656	2.61457177574	-0.317141304046969	0.673059927905428	1
Merged-chr2-31080817-2	chr2	31080317	31081317	+	662.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	15683.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	3.66735988369691	3.45610250365735	3.42134934909345	3.43976056973811	3.28493474397967	3.60095810878491	-0.306681862316754	0.607764891733381	0.884709874063631
Merged-chr7-100532756-2	chr7	100532256	100533256	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4344.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	5.51204287341306	5.66300649719496	5.46761550309137	5.40117093928561	5.72066287267339	5.34320507825742	-0.0780018072611167	0.820472028547946	0.957648957783354
Merged-chr6-47943183-4	chr6	47942684	47943684	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027963)	promoter-TSS (NR_027963)	9.0	NR_027963	232785.0	Mm.482185	NR_027963	ENSMUSG00000072653	Zfp783	A230106D06Rik|Gm20494	zinc finger protein 783	ncRNA	2.70491725804283	2.69196684756836	2.53829926047799	2.71309679347543	2.66540268730741	2.92378850863383	0.620628515059406	0.414431756558558	1
Merged-chr16-5049974-4	chr16	5049469	5050469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	-59.0	NM_028720	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	8.78258032810491	9.35694887030755	8.73819485109013	8.72027524256485	9.00618757007684	8.75559685442313	-0.220571155815736	0.38956708288192	0.769244170164916
Merged-chr13-24103341-4	chr13	24102839	24103839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-112125.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	5.26179102915059	5.24047731948382	5.30267322069645	5.22674796016929	4.85326247881523	5.36564153783494	-0.234726085870521	0.532331482472665	0.851971173271146
Merged-chr12-80229136-4	chr12	80228603	80229603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	31268.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.14632043616012	6.0319041314142	6.11642053296854	5.6591289139486	5.58934020619711	6.17650833237099	-0.487975164315187	0.138221248327532	0.496960021384664
Merged-chr18-9450175-4	chr18	9449683	9450683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-29.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	7.33477470577625	7.4053237204244	7.20456311625287	7.50464201109434	7.04286762719139	7.07003535278435	-0.142216540665489	0.58629413308283	0.875450945538768
Merged-chr8-123860084-3	chr8	123859624	123860624	+	971.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028536)	promoter-TSS (NM_028536)	85.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	5.11940649650232	5.12571794310473	4.96318532391591	4.80933413376161	4.90691146006629	4.80010209862176	-0.506559933291211	0.179341144132946	0.560853474677651
Merged-chr13-5988645-4	chr13	5988141	5989141	+	933.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	127152.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	2.87122375618991	3.22876615989274	2.99883185923094	3.02560163257896	3.06213489631105	3.39931885013967	0.545434352785075	0.437157603908636	0.79976715856888
Merged-chr9-106858225-4	chr9	106857720	106858720	+	949.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001015507, exon 14 of 23)	exon (NM_001015507, exon 14 of 23)	28780.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	3.14909931631612	3.18057440600039	3.20268292423482	3.14926716765796	3.24889054224158	3.27396503021632	0.202887159332812	0.745152176570952	0.936032341688524
Merged-chr8-125462410-3	chr8	125461904	125462904	+	898.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	30429.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.41381142743606	4.72533023944237	4.83032820509944	5.42378882087579	5.7406202347013	5.67456493999929	2.01380955714774	2.0627425326262e-07	1.34934497370095e-05
Merged-chr10-75317251-6	chr10	75316944	75317944	+	930.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331095)	promoter-TSS (NM_001331095)	-156.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	2.77067263619424	2.95711348414601	2.98994964582023	2.75692789381971	3.00075191188514	2.75866735478648	-0.279848093011802	0.701986162365323	0.921655904413245
Merged-chr1-64530874-6	chr1	64530346	64531346	+	899.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1958.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	4.39424308223448	4.03301211992287	4.12559793202685	4.42408225838985	4.26600188124777	4.54524421051313	0.563373570762653	0.235319348642691	0.631536893333007
Merged-chr14-25749384-3	chr14	25748887	25749887	+	923.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	19469.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	3.74734116637792	3.77940581538922	4.29574838264629	3.74330307584569	3.57441619982116	3.98373468041661	-0.581003619192281	0.30976644962958	0.705458703461281
Merged-chr17-27853921-2	chr17	27853421	27854421	+	605.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-2586.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	3.01318441286753	2.66061182572162	2.93240985706283	2.97233038058008	2.81720314403858	2.82082043613885	-0.0226107508868136	0.97531480498437	0.994454548709104
Merged-chr10-121587609-4	chr10	121587104	121588104	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-810.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	7.67170037723347	8.1091474426094	7.33194018246049	7.89471871525342	8.28064569643455	7.72618838269621	0.344017780953808	0.24806321305537	0.645132606072547
Merged-chr5-5380354-7	chr5	5379938	5380938	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011074)	promoter-TSS (NM_011074)	-187.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	5.78111241054004	5.71261880664091	5.80343934928995	6.35131686819358	5.53265311816933	6.0082958206702	0.423353965527497	0.237222229804068	0.633648592261465
Merged-chr7-127013680-2	chr7	127013180	127014180	+	846.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	B1F|SINE|Alu	914.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	6.06573569250442	5.92944064810369	6.20682807818421	6.36382211285675	6.1448002076801	6.22639684366442	0.308349958022673	0.286980005221599	0.684323804399215
Merged-chr13-91702519-4	chr13	91702021	91703021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015501, exon 2 of 2)	non-coding (NR_015501, exon 2 of 2)	-39000.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.51049603208233	4.4861800047443	4.69198574722813	3.98400310381786	4.50348484363233	4.21397060235224	-0.761429019466347	0.116429453991168	0.455577804265088
Merged-chr11-44539420-3	chr11	44538923	44539923	+	708.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	20046.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	6.34934649455591	6.41319384686508	6.24064258414931	6.74648421366702	6.82677593045266	6.57131554839721	0.616084929987696	0.0210131927815494	0.166774679985422
Merged-chr9-65681108-4	chr9	65680593	65681593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	4545.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.08838263348243	5.14089855707482	5.48585538552554	5.0349914987422	5.02004209205741	5.35434107060144	-0.213612610632666	0.572966640547099	0.869934493236159
Merged-chr12-112693635-4	chr12	112693119	112694119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	14779.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	7.8826658762686	8.07222303392703	7.6654985164865	7.63818330694132	7.75057692947391	7.09259928311955	-0.508132679876667	0.0673014911972305	0.339148648227904
Merged-chr5-123848274-4	chr5	123847672	123848672	+	876.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17344.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.75251766385703	4.65770034996539	4.61126784045594	5.57959128121848	5.66921349237623	5.12865551617434	1.70624047339302	1.34312216733762e-05	0.000516682890891487
Merged-chr11-118457159-4	chr11	118456670	118457670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-2175.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	8.16617506446429	7.90729049176338	7.6260365930594	8.06003712729436	8.11042274970794	7.73021006018349	0.081699157504836	0.750003038321588	0.937476275940627
Merged-chr8-84709305-4	chr8	84708772	84709772	+	969.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081982, intron 9 of 9)	intron (NM_001081982, intron 9 of 9)	7815.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	4.29966658156332	4.31312380718747	5.07399891787081	4.71363527885725	4.42117626297828	5.04663578200624	0.32240709337645	0.527882621206358	0.850219758590516
Merged-chr10-128705078-4	chr10	128704571	128705571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016756)	promoter-TSS (NM_016756)	-20.0	NM_016756	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	7.04646143737626	7.05364172132897	7.2988055104344	7.14647457923842	7.15455295726688	7.17280927523012	0.0400496036546503	0.86739090984916	0.969329865332858
Merged-chr9-57073601-4	chr9	57073103	57074103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110351, intron 1 of 21)	intron (NM_001110351, intron 1 of 21)	1563.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	7.15882965652723	7.22720485645684	7.4077951620207	7.1741597025415	7.35001998832681	7.18544443038015	-0.0286673432110381	0.904706984351557	0.978159081111766
Merged-chr5-148548175-4	chr5	148547647	148548647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	3526.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	7.03293718529742	6.71891434756576	6.83051761239334	7.40241342949093	7.45836690218095	7.08857183453932	0.701656964283684	0.00693699521877496	0.0775918516430578
Merged-chr10-18235185-4	chr10	18234666	18235666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144820)	promoter-TSS (NM_144820)	-185.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	6.91977483691322	7.28787826192533	7.04321022875065	7.14170362680795	7.19483291188981	6.93501843400942	0.00780517135933091	0.975851146140121	0.994568517612701
Merged-chr10-119066153-3	chr10	119065657	119066657	+	833.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15658.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.35022636141611	6.4912743071753	5.95463122632361	6.74173938641339	7.22022285475292	6.14548351560821	0.789329926678998	0.0326042788846661	0.219759970630644
Merged-chr4-101069027-4	chr4	101068550	101069550	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183024)	promoter-TSS (NM_183024)	12.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	3.87116652405713	3.7075660480694	3.93905028507111	3.38466381396386	3.4414948919682	3.50119591025423	-1.41073390128177	0.0135575637786392	0.12406222004762
Merged-chr5-67958645-1	chr5	67958145	67959145	+	707.0	f0_balb.idr	intron (NM_001256184, intron 2 of 3)	(CAAAA)n|Simple_repeat|Simple_repeat	-15564.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	4.13857031419784	4.41133392319818	4.37547388837391	3.35386298422422	3.46535680636866	3.69421422345377	-2.74298465535875	3.64883103390801e-06	0.000168112919529024
Merged-chr3-36151352-2	chr3	36150852	36151852	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101478, intron 1 of 3)	CpG	272.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	4.49540947997288	4.09254701028296	3.98801607284162	3.99716516006301	4.12501996859558	4.33997181952344	-0.172347030207103	0.735086188127863	0.932617455907478
Merged-chr15-64003333-4	chr15	64002823	64003823	+	955.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	GA-rich|Low_complexity|Low_complexity	-5257.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.46533562713347	4.27861187390751	4.61780499645157	4.49103351684603	4.46258002792401	4.39558467940996	0.000664843400267977	0.998793562416644	0.999777890446572
Merged-chr11-55206127-3	chr11	55205670	55206670	+	786.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153139, intron 1 of 10)	L3|LINE|CR1	1830.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	4.84203017020859	4.85494057901407	4.99881838203351	4.83057209507906	4.93892834860203	4.92280157410664	0.0107338235424619	0.977482815353087	0.994843070843726
Merged-chr14-34518451-4	chr14	34517951	34518951	+	659.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030062, intron 1 of 2)	intron (NM_030062, intron 1 of 2)	4350.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	2.45546491582801	2.55985519276315	2.5301758126535	2.72543509761619	2.6928232488802	2.73163221416147	1.14945502206801	0.134551911579021	1
Merged-chr3-51915449-2	chr3	51914949	51915949	+	622.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	189557.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	2.19597603089703	2.3479043805153	2.37104739741643	2.37552735391681	2.20914460542935	2.63114233171509	0.673610116032715	0.436830676841725	1
Merged-chr5-140620225-2	chr5	140619725	140620725	+	814.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175274)	TTS (NM_175274)	12884.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	3.88894294075467	3.9059600686994	4.29551946238834	3.78130814336811	3.56020221136846	4.0228129044619	-0.755241349764539	0.172969136126408	0.551687207865922
Merged-chr11-87109002-4	chr11	87108456	87109456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175563)	promoter-TSS (NM_175563)	-242.0	NM_175563	270906.0	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	5.17043888081847	5.19949308625522	5.21978322723167	5.31647666524411	5.34274168091312	5.11442511479242	0.152365418073079	0.663720598708387	0.907297356021587
Merged-chr4-132963681-4	chr4	132963196	132964196	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10399.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	5.04456123816414	4.7562085389591	4.79377438299641	4.86806515971375	4.95022842951623	5.10773990766059	0.216664617459426	0.579340112705663	0.872501938425571
Merged-chr5-105701099-2	chr5	105700599	105701599	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	289.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.65418613701399	7.81270177812654	7.33483617546732	7.46858465948387	7.57137644659262	7.17044738945932	-0.292880803025092	0.262169944299091	0.660045546680462
Merged-chr2-27714875-2	chr2	27714375	27715375	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4292.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	8.09025299861078	8.60481688575975	8.36466391456021	8.01241079921392	8.33342042886916	7.9810704546543	-0.347253977304415	0.165790724382906	0.540926797264843
Merged-chr1-155071778-2	chr1	155071278	155072278	+	848.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	11486.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.28689875412404	4.30965276509403	4.40553055638183	3.88832322671768	3.96267734567246	4.26208735163778	-0.828805022820285	0.0863302251043085	0.389215722284314
Merged-chr9-32672563-4	chr9	32672066	32673066	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23476.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.15154497523978	6.10492888536836	6.16944428001318	6.21850424856561	6.07644532543777	5.98412160416002	-0.0685437560728195	0.809990202645772	0.95488459921438
Merged-chr12-73678243-3	chr12	73677781	73678781	+	670.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	93485.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	3.50358602201448	3.49020657768675	3.59437266165602	3.48905878218025	3.21282295241068	3.66393314272603	-0.253190300006084	0.674587200859842	0.911852710156386
Merged-chr4-117787172-3	chr4	117786696	117787696	+	893.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21530.0	NM_029416	75753.0	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	2.91982406620327	3.00962064684496	2.93063531187087	2.90122639434128	2.87115819537025	3.0029526898415	-0.15816622619977	0.816452173048366	0.956666864565081
Merged-chr4-145201154-1	chr4	145200654	145201654	+	561.0	f0_balb.idr	Intergenic	ID_B1|SINE|B4	-6149.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.97507195926891	6.2961223931378	6.17818067561991	5.70041970512884	5.96065416395879	5.9055258463087	-0.509096490960023	0.0967905254631014	0.414735364474677
Merged-chr10-42225302-4	chr10	42224792	42225792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	51450.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.36833681287382	4.3306976657585	4.15265744871942	4.01093896093358	3.98937828344323	4.31132466926266	-0.532833659127782	0.267254849966418	0.664581053738824
Merged-chr1-125560949-4	chr1	125560445	125561445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028787)	promoter-TSS (NM_028787)	-57.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	8.0758955381371	7.92029232024664	8.04611096755791	8.05259295135421	7.94019079711587	7.66888135274034	-0.159043766890128	0.486042656955353	0.827641640456729
Merged-chr4-88552821-2	chr4	88552321	88553321	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4A|LINE|L1	5424.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	2.15401267700315	2.15886339920707	2.17139622798304	2.24639887255266	2.12185567574005	2.37484725216571	0.611405797835377	0.484021970908702	1
Merged-chr2-52072801-4	chr2	52072311	52073311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175238)	promoter-TSS (NM_175238)	-26.0	NM_001355415	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	4.5905693326713	4.44463241480198	4.40839771845098	4.65444910985951	4.46372377511851	4.4764104220253	0.115716376661351	0.787291276936407	0.948765654678185
Merged-chr18-24470863-4	chr18	24470387	24471387	+	933.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026529)	promoter-TSS (NM_026529)	16.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	5.30151308516898	5.3858162401224	5.23670051637885	5.34344403392865	5.58465568024291	5.80115506170523	0.518142882100884	0.136396913546021	0.49344845140597
Merged-chr14-30876227-4	chr14	30875737	30876737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3020.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	6.18991104889233	6.14485850483216	6.18240586930655	5.37525785624502	5.71176115291499	5.43958432811506	-1.14130233955599	0.00035622734777543	0.00801974165413907
Merged-chr18-9378290-2	chr18	9377807	9378807	+	609.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	71847.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.71423217043082	4.74296740922638	4.94630250450225	4.64659214679913	5.035136234688	5.10955886800403	0.326140532079634	0.423285304113319	0.791868419997774
Merged-chr13-9783906-4	chr13	9783406	9784406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18585.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.1118870448505	6.21796100863892	6.0998080907993	6.22190585851766	6.24387569933467	6.60557672706582	0.353105514726364	0.226190454006943	0.621140322788657
Merged-chr10-96163495-4	chr10	96162990	96163990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62717.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.11666089644219	6.52488984699315	6.43929221648095	6.42605188447377	7.16726263616819	7.0157173766575	0.853305214438054	0.00793154750321253	0.0855767900216945
Merged-chr1-162207413-4	chr1	162206939	162207939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-10184.0	NR_002870	474332.0	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	5.06804273543045	4.89391583827805	4.74616481655426	4.25593268471666	4.34132657703783	4.61353258073403	-1.23485886912178	0.00406982223489768	0.0526168067932514
Merged-chr3-88746986-2	chr3	88746496	88747496	+	908.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	25603.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	3.93968314724981	3.82110441260854	3.90457007925552	3.69554252917739	3.65038555017142	3.66721118378704	-0.721808670614463	0.17122659474661	0.549224104532435
Merged-chr2-132008273-4	chr2	132007765	132008765	+	918.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	21723.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	5.63088958529017	5.49968359422741	5.77965966290652	5.39993130274971	5.04946129259129	5.7453500907386	-0.42259349140056	0.258114440799921	0.655571758801008
Merged-chr10-39261339-4	chr10	39260846	39261846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97552.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	4.65136120188288	4.74432340534398	4.58547277770393	4.21349907160145	4.16113058071955	4.40023906322418	-1.06148424683148	0.0154970182149641	0.135741963915657
Merged-chr4-141723467-4	chr4	141722979	141723979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001017966)	promoter-TSS (NM_001017966)	-60.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	7.38250710131095	7.23524801997657	7.04014873686367	7.24579279359249	7.19377920277927	7.24943509543163	-0.00918359733643484	0.969655519593725	0.993198925979166
Merged-chr16-10785150-4	chr16	10784674	10785674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271603, intron 1 of 1)	CpG	362.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	6.60376518096762	6.50546078370789	6.24052955668544	6.65237861029516	6.62020938579723	6.51776075677214	0.210769574790466	0.439983168419659	0.801567033070239
Merged-chr2-27679486-2	chr2	27678986	27679986	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2285.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.25954110196715	7.70793719736612	7.36893585206308	7.48567895496953	7.5895763604987	7.22838922235722	-0.0217521268465974	0.933658391871354	0.985581479569838
Merged-chr4-45478963-3	chr4	45478412	45479412	+	799.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	51916.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	2.86181656872195	2.59302933652798	2.92055945580691	2.82153698671682	2.69940210816889	2.81402561957587	-0.0959989520189927	0.89691020106407	0.97587199430405
Merged-chr1-136346803-2	chr1	136346303	136347303	+	839.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	-699.0	NM_001347110	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	3.4645818280919	3.21949561814062	3.33400000119858	3.50421859201592	3.32486463699642	3.34851804156222	0.198186941677249	0.744374297899455	0.935957092897997
Merged-chr5-97320302-4	chr5	97319802	97320802	+	870.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	72028.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	3.09047732009373	3.17668077472222	3.19919378327997	2.89873379642056	2.95062255057598	3.42831886287469	-0.203907079242377	0.769474354783895	0.943125565788486
Merged-chr10-80427180-2	chr10	80426680	80427680	+	670.275024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164153, intron 3 of 18)	intron (NM_001164153, intron 3 of 18)	6473.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	2.67172157753407	2.6019870987044	2.87080138013046	2.7393622825503	3.06464556421272	2.82239946044184	0.892459680624567	0.235234713567822	0.6315179111056
Merged-chr13-55209024-2	chr13	55208524	55209524	+	916.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008739)	promoter-TSS (NM_008739)	-758.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	2.80247109010021	2.79774645414461	3.13508364664819	2.92550832335915	2.86452479168782	3.31139748786405	0.58549583584108	0.420499028364207	0.789742624867499
Merged-chr18-36471125-4	chr18	36470659	36471659	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-16664.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	6.92836016645514	6.95687788145266	6.59439856524669	6.76670855863091	6.83158593292479	6.29968084617958	-0.277556957293264	0.343707250010606	0.732572352000629
Merged-chr6-38737145-1	chr6	38736645	38737645	+	550.0	f1_balb.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	74076.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.74234121165419	3.71874480468586	4.12716151788077	3.52992436850701	3.38824497508174	3.83997925335565	-0.933799702769794	0.112053648314464	0.447085656443716
Merged-chr18-82763492-2	chr18	82762992	82763992	+	865.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-4453.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	4.60104041380591	4.47106679721898	4.63532693943905	5.01027704831483	4.72586063572524	4.9284630512892	0.747581615005605	0.0664689390591284	0.336764663888096
Merged-chr6-114876207-2	chr6	114875707	114876707	+	613.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	45614.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.66788865636696	5.79063085403297	6.13963382142168	5.64230934707962	5.45991445550272	6.03881342339252	-0.267858769610256	0.44922023733181	0.807594795348397
Merged-chr1-53816618-4	chr1	53816127	53817127	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001883, intron 28 of 28)	MTE2b|LTR|ERVL-MaLR	-31412.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	6.20152756704275	6.10458203230306	6.23631132691059	6.2919257081448	6.10670897667587	6.12910451165011	-0.000715041610520669	0.997976918467475	0.999579683478894
Merged-chr9-21264639-1	chr9	21264139	21265139	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-646.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	3.11730062858945	3.28155805955334	3.36626389480748	3.30927722434947	3.03772246257451	3.0937904066836	-0.438606988565927	0.500107498490331	0.834921806675451
Merged-chr8-13674475-4	chr8	13673977	13674977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3110.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.56427826452147	7.41958431721114	7.45982884266637	7.3200410037705	7.66390522192412	7.52683675643326	0.0466324255514485	0.843970434939531	0.963698950090763
Merged-chr19-10858056-2	chr19	10857556	10858556	+	780.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023044)	TTS (NM_023044)	11723.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	3.29646369988513	3.01293416855481	3.36458578299303	2.90280878836956	2.92634388816498	3.27612323840875	-0.831808395338017	0.231923325383848	0.628103303982846
Merged-chr19-44254213-2	chr19	44253713	44254713	+	566.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39463.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	2.72093115848299	2.8952720200429	3.03567403251895	2.69265653006587	2.92801043635354	2.87500040267584	-0.238381792727403	0.744077946308367	0.935881456525231
Merged-chr3-96558835-2	chr3	96558335	96559335	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023719, intron 1 of 7)	intron (NM_023719, intron 1 of 7)	878.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	6.64900826478348	6.54971130110413	6.99957060654061	7.30638017088653	7.44922670376829	7.28771064780097	0.939675364312345	0.000293945961961309	0.00685308366569813
Merged-chr2-4607491-2	chr2	4606991	4607991	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 11 of 11)	intron (NM_001177844, intron 11 of 11)	44644.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	2.9303267942705	2.75786349281757	2.87973674670929	2.9558604663257	3.06608876516819	3.12974836502585	0.926488270696845	0.180223180069519	0.561900868076458
Merged-chr15-81729551-2	chr15	81729051	81730051	+	996.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011241, intron 1 of 16)	CpG	368.0	NM_011241	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	5.12117413164853	5.40335647899043	5.0451470593557	5.29315586609464	5.31065821003624	5.14592790594927	0.0973297838212486	0.789423285812016	0.94921167421876
Merged-chr11-97665086-2	chr11	97664580	97665580	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139311, intron 2 of 19)	intron (NM_139311, intron 2 of 19)	1668.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	2.08010690229376	2.08951328500667	2.06356085413832	2.25683918356946	2.08638968552522	2.39768314765631	1.26064407937703	0.167118534039471	1
Merged-chr6-124307056-2	chr6	124306556	124307556	+	922.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 3 of 17)	exon (NM_053094, exon 3 of 17)	2405.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	5.83593830249589	5.90135784378769	5.73256289657219	5.53474400990232	5.48364581402481	5.8193670610118	-0.405312865111776	0.205574492417483	0.596131993192832
Merged-chr5-140503186-3	chr5	140502684	140503684	+	744.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-2425.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	3.48304516134414	3.36868421278857	3.66302437850885	3.70001664826737	3.65802032711506	3.62904035041467	0.571700361183724	0.311636718946977	0.706631105711982
Merged-chr10-62488476-4	chr10	62487972	62488972	+	818.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1667.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	4.18634065114427	3.76604846299077	4.30642803615678	4.22075857032165	4.18340683160759	4.28794014450671	0.362614680468569	0.473598618200883	0.82098320465123
Merged-chr1-173962858-2	chr1	173962383	173963383	+	721.333374	f0_balb.idr|f1_balb.idr	intron (NM_008327, intron 6 of 6)	intron (NM_008327, intron 6 of 6)	19961.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	6.08968389714231	6.04376477831438	5.44148282462948	4.29556684382286	3.84703065954014	4.35600019691808	-4.23789312099946	6.22395886674518e-17	2.51399596788414e-14
Merged-chr12-80242828-3	chr12	80242321	80243321	+	754.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	ID_B1|SINE|B4	17550.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	3.74839693593521	3.69783306935841	3.74552782293399	3.50817204032047	3.45934261115491	3.60819602335057	-0.735451899981859	0.183382839067067	0.566491618839527
Merged-chr11-115188825-4	chr11	115188325	115189325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	1338.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	9.01680365460835	9.00565660687229	8.39372440165715	8.73161867577044	9.03730366040574	8.3803981734633	-0.125826324691549	0.653516750329538	0.903421138732039
Merged-chr3-87364815-4	chr3	87364310	87365310	+	856.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	6929.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.20392406193303	5.28943437280256	5.14243687051449	5.74684601983946	6.0084954612781	5.85269540296376	1.24300889100372	0.000170269949100992	0.00439448570868343
Merged-chr7-100121556-4	chr7	100121042	100122042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-42.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	7.79703409688297	7.72066705880042	7.52366772656741	7.39838242233518	7.57640306250408	7.36861247356025	-0.34227617942626	0.141917838423572	0.502906663928196
Merged-chr8-111876787-4	chr8	111876246	111877246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025781)	promoter-TSS (NM_025781)	-71.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	6.22835935541222	6.34135078587117	6.26681599780496	6.24124976045157	6.095614480794	6.04765806258328	-0.248626109241803	0.374718819583041	0.758118627242714
Merged-chr6-125039045-2	chr6	125038542	125039542	+	741.849976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-806.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	5.93522489149112	6.06470026380562	6.06026782434736	6.24893464142789	6.49244655502768	6.16534519541301	0.50747473484955	0.0805853128826226	0.375607366924561
Merged-chr5-53594161-4	chr5	53593655	53594655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3669.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	5.49566666094161	5.33039479098014	5.33970275687651	5.51285089704287	5.85248934552617	5.52625972873909	0.489252815071027	0.150354069733286	0.517246479850651
Merged-chr15-73604754-1	chr15	73604254	73605254	+	653.5	f0_balb.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-8228.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	2.97748762514761	2.95925368833024	3.26648989999257	2.81930595610085	3.00049950542787	3.06599777226185	-0.485232402882772	0.48571036217811	0.827565480713329
Merged-chr2-174339145-2	chr2	174338645	174339645	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201616, intron 3 of 11)	intron (NM_201616, intron 3 of 11)	9056.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	2.51613501114657	2.54596259231241	2.58091762299753	2.62417359025793	2.60585715902987	2.71604196853904	0.577233799249531	0.446089725040388	1
Merged-chr17-17592577-2	chr17	17592077	17593077	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	31912.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	4.50921767225967	4.53158386728193	4.5951369473019	4.57911974172127	4.52933635321936	4.84762348478285	0.256351157263696	0.542329403694761	0.857068480766623
Merged-chr1-33909309-2	chr1	33908809	33909809	+	772.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	1084.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.82379701518395	4.69268486533964	4.6057435941821	4.78138608509969	4.58883707471745	4.58832932418067	-0.140353956196673	0.732161055373365	0.931715588770791
Merged-chr6-120486112-1	chr6	120485612	120486612	+	700.0	f1_balb.idr	Intergenic	MIR|SINE|MIR	7695.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	2.27393779601131	2.35684443548061	2.57689849092061	2.45245935477997	2.43256201805538	2.589184236833	0.536931835061639	0.513246712894129	1
Merged-chr2-59438597-4	chr2	59438101	59439101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46052.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	7.26148207135244	7.23787628565406	6.66451489211973	6.96109065820701	6.91867311522874	6.67140392474209	-0.354240127921995	0.217855869900308	0.611901565759233
Merged-chr5-66138242-3	chr5	66137746	66138746	+	690.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12732.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.27464126264698	6.13502045599629	5.88544026406675	6.59645073903436	6.71473755435136	6.33997545039412	0.737462679350027	0.0128382204338856	0.119879098402284
Merged-chr6-97807472-2	chr6	97806972	97807972	+	934.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	414.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.43778630167122	6.60203774500632	6.63718169527868	6.63689729117933	6.56327671030469	6.64736346934453	0.0882356693359065	0.734243855682856	0.932334733380016
Merged-chr5-65956759-2	chr5	65956259	65957259	+	634.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10365.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	5.03427459314178	4.94532692341297	4.868010313369	4.88545970136527	5.36366711127148	5.18193074742473	0.444602461338532	0.251511012111498	0.649002304030686
Merged-chr2-27684189-3	chr2	27683690	27684690	+	674.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	6989.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.13126037643737	6.4518545049789	6.71013765760414	6.2797169145108	6.43202069148265	6.56623087441781	-0.0255598973983489	0.932454644790362	0.985140380452988
Merged-chr11-63052996-4	chr11	63052484	63053484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8675.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	4.90501939071017	4.9393092812696	4.87478926066954	5.54528443289701	5.5281070947529	4.98215004851645	0.989992965558412	0.0102384190653392	0.10208728263496
Merged-chr19-56818071-5	chr19	56817578	56818578	+	785.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4395.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	3.44034486014219	3.52904207515509	3.42359080901057	3.44183805403281	3.44831368029435	3.60221794177097	0.100660618295096	0.861305771743397	0.967789299492425
Merged-chr1-91095113-3	chr1	91094614	91095614	+	727.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41670.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	4.31356031636802	4.49648665696766	4.89932873734079	4.717495204834	4.46624735323149	4.51605520352777	-0.0259231036529749	0.954658979386988	0.989617250984245
Merged-chr10-14960081-3	chr10	14959585	14960585	+	676.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199796.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	5.15550631072801	5.28938654011186	5.09057198411349	4.8790173216206	4.52733590381412	4.70463563988444	-1.05675360597453	0.00714708092568586	0.0793560594695048
Merged-chr5-112195946-2	chr5	112195446	112196446	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10817.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	2.98082099550251	3.14210221693564	3.05419417141491	3.04856436350296	3.07006335376928	2.8122689490992	-0.335069854474255	0.62965357679558	0.894364606069187
Merged-chr8-79058711-4	chr8	79058211	79059211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	30274.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	5.16787163396637	5.51164580640784	5.2946277258096	4.33469009051159	4.23576087438573	4.70458742502499	-2.10243173086745	7.98702820860059e-07	4.46029961866602e-05
Merged-chr12-3903643-3	chr12	3903143	3904143	+	843.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	11899.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.28070094747577	6.33616370089784	5.87855882079123	6.19742954613042	6.42874320538103	6.01701967762389	0.0736256812838173	0.814707685287833	0.956369939298364
Merged-chr10-44070828-4	chr10	44070322	44071322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65976.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	6.14868566239764	6.5734067013001	6.68442638995681	6.43252514076294	6.60288067429621	6.40344070135145	0.00840596346180592	0.977349224047114	0.994771164142869
Merged-chr5-108567683-2	chr5	108567157	108568157	+	586.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17630.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	3.17217132525453	2.96309181930809	3.43345960681697	2.96726820372147	2.96698015789002	3.40216330915654	-0.3201678920767	0.649426799707254	0.902160587683553
Merged-chr2-32606980-4	chr2	32606466	32607466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	-19.0	NM_001289547	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	6.56562068226512	6.3518496851578	6.47142874737039	6.9011010313994	6.24968102768682	6.530953868385	0.194914259564265	0.523851651900982	0.848428438699863
Merged-chr8-84844097-2	chr8	84843597	84844597	+	898.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007591, exon 7 of 9)	exon (NM_007591, exon 7 of 9)	2834.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	4.22770351560614	3.93035016931952	4.41685105905342	4.11411964424326	3.90514471131434	3.94742957507396	-0.596984270763199	0.242017160661074	0.639104507431288
Merged-chr17-45581549-5	chr17	45581105	45582105	+	834.676208	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8344.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.06307386521023	3.82694206625731	3.58679196552523	3.84518020401927	3.43099766226849	3.41843861525894	-0.874955428270714	0.150420832494258	0.517247822505929
Merged-chr4-133139173-3	chr4	133138681	133139681	+	734.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	8548.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.87287497894501	5.69602420871469	6.01251621106574	6.09500192347281	6.18077525655855	6.17981884610359	0.512230954231295	0.0838671120728665	0.383281960858959
Merged-chr5-67823207-2	chr5	67822707	67823707	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	24224.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.97083366817191	5.93326601813449	5.39320548631002	5.96960582093182	6.08506696096373	5.89496166112712	0.320892803756924	0.339792662088228	0.729430815176009
Merged-chr1-165606251-3	chr1	165605738	165606738	+	891.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 2 of 5)	intron (NM_001083897, intron 2 of 5)	28303.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.23121056393119	3.23868264878328	3.48776244524771	3.49818653370006	3.46152454049357	3.21858490559984	0.333926615739329	0.590096671523037	0.877100187719802
Merged-chr1-121464244-1	chr1	121463744	121464744	+	543.0	f1_c57bl6.idr	intron (NM_029955, intron 11 of 23)	MTE2a|LTR|ERVL-MaLR	33177.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	5.74265016101784	5.76943915218085	5.73876232593723	6.74147271887072	6.90615445940322	6.70799187030507	1.73034976272323	4.62784328829962e-10	5.34082641238329e-08
Merged-chr12-73304873-4	chr12	73304384	73305384	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	18036.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	5.18316183233065	5.38230600325316	5.30469055867501	5.50573118382581	5.40623620371506	5.51709375746938	0.35270736896361	0.296313441543057	0.693022144754045
Merged-chr17-17634256-4	chr17	17633749	17634749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9760.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.78376687691201	5.85195445877592	5.96814126762599	6.19819587724391	6.26842269128906	5.98234301982213	0.519684225010189	0.0792570134043755	0.372147032975074
Merged-chr12-59052632-3	chr12	59052134	59053134	+	815.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306217, intron 1 of 4)	Lx9|LINE|L1	8838.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	3.38357125319087	3.32910241356565	3.81284819950363	3.55428315210063	3.56385205565	3.53287590932903	0.124279708883726	0.835864941575688	0.961873866737315
Merged-chr3-100430518-4	chr3	100429994	100430994	+	899.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	4089.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.11904683855956	3.88966214411917	4.05402072661005	3.79816082635242	4.02718699922954	4.02791196185231	-0.199123930363577	0.693674809581835	0.918993212493267
Merged-chr1-52655369-4	chr1	52654875	52655875	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133829)	TTS (NM_133829)	24670.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	2.40590371621038	2.2679417335967	2.50615029606968	2.2770641715592	2.06540051380975	2.26014275400695	-1.36807131077435	0.130025619680103	1
Merged-chr14-57827527-3	chr14	57826987	57827987	+	638.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026401, exon 2 of 2)	3' UTR (NM_026401, exon 2 of 2)	1248.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	4.15325027346901	4.28968893316932	4.54002314165936	4.60866221587009	4.75763360378959	4.72278846998351	0.931550043530129	0.0331531143612697	0.222078216430533
Merged-chr10-80561539-7	chr10	80561062	80562062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025852)	promoter-TSS (NM_025852)	-2.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	7.79688959312226	7.82832879330844	7.32626056834048	7.83690295609514	7.69462838744547	7.38353792960899	-0.0306161219184665	0.908582525849155	0.979266532095756
Merged-chr11-77513329-4	chr11	77512812	77513812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024920)	promoter-TSS (NM_001024920)	-39.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	5.29106205589931	5.28014083999304	5.40662344338168	5.32378415107138	5.17593907400353	4.96841729016301	-0.304969930913859	0.394612891342883	0.772514857254462
Merged-chr2-44275475-3	chr2	44275000	44276000	+	739.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-210176.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	6.53703700683071	6.63573008189472	6.14151799897617	6.45905861775961	6.54565244223453	6.06003270205685	-0.133770692857004	0.667873479996543	0.908907404460966
Merged-chr15-98992701-4	chr15	98992206	98993206	+	987.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6741.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	6.64005195666594	6.48320804670082	6.59739337914598	6.58909483587045	6.64097447851164	6.46242154658281	-0.00189656581127585	0.994215990997814	0.998918571480046
Merged-chr14-79426488-4	chr14	79425990	79426990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024135)	promoter-TSS (NM_001024135)	-21.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	6.30688351131648	6.1349743061237	6.10339335236405	6.42638267599574	6.28307355860298	6.29120312624038	0.242657361519523	0.384932220114216	0.766070343813858
Merged-chr13-95843001-3	chr13	95842458	95843458	+	761.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	48964.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.05070788412295	3.08516512627503	3.24835114763121	3.74488552783736	3.75339074260385	3.60755920093135	2.38868436553435	0.000181304692981664	0.0046191062136002
Merged-chr16-20426420-4	chr16	20425921	20426921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013790)	promoter-TSS (NM_013790)	-27.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	5.82588313950622	5.45440248843636	5.68294997298186	5.67152317798753	5.26675975018364	5.19919394244404	-0.497406290700632	0.16865268727677	0.545319530695791
Merged-chr19-4396544-4	chr19	4396061	4397061	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001001984, exon 1 of 21)	5' UTR (NM_001001984, exon 1 of 21)	516.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	8.89499134031035	9.0972006156576	8.65740359969024	8.80564497909205	8.88551391353938	8.72220988605659	-0.126981208732574	0.562473942163834	0.865745518569294
Merged-chr6-87535814-4	chr6	87535329	87536329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2570.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	8.27413534937374	8.03855348379139	7.82306938365845	7.91864610923851	8.2104195838518	7.792800631981	-0.100903198714318	0.686971286426462	0.916965854132552
Merged-chr10-26777635-3	chr10	26777159	26778159	+	729.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	5147.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.23972409216015	4.28572483418149	4.22789036145626	3.82986601556272	3.43637668238823	3.86822899290328	-1.68861718695685	0.00198200014431962	0.030762594293704
Merged-chr17-33818897-2	chr17	33818446	33819446	+	958.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_030697, exon 5 of 11)	exon (NM_030697, exon 5 of 11)	5616.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	2.59584659234677	2.75240301193269	2.76953082929029	2.87393745056504	2.64228022257656	2.84279903060638	0.421000803605753	0.569729543072485	0.868895247713032
Merged-chr11-22657167-2	chr11	22656667	22657667	+	647.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	144884.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	5.29529035228315	5.04882650858624	4.93821107987959	5.43266257162078	5.0722351301323	5.21811466675388	0.2778871497298	0.462736636941494	0.815421548245998
Merged-chr17-32284406-1	chr17	32283906	32284906	+	1000.0	f0_c57.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-273.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	8.83272007486852	8.3212970513383	8.36581603056663	8.68701261948315	8.04039469392788	8.43870490745548	-0.160826946844602	0.557892076029439	0.86443214373182
Merged-chr4-133468252-4	chr4	133467753	133468753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11880.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	7.63187148088428	7.41918480112567	7.2880996141344	5.86327619420828	5.46201544192349	5.53613024278259	-2.98484805735623	2.2433441333682e-23	2.87175659460464e-20
Merged-chr10-62582422-4	chr10	62581920	62582920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 15 of 15)	exon (NM_019553, exon 15 of 15)	-3963.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	6.62455698680131	6.56564961797024	6.66477192476	6.71166499632973	6.80227979502673	6.57219217467982	0.14276069877505	0.578985562792541	0.872437129840066
Merged-chr7-55853561-4	chr7	55853043	55854043	+	992.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 1 of 30)	L1ME3G|LINE|L1	11472.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	6.81343258749866	6.44550049396962	6.57746052781231	6.81985851796239	6.95588276538341	7.0372265019588	0.490914451239773	0.0659831883794564	0.335249310954298
Merged-chr8-11016360-4	chr8	11015854	11016854	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7924.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.84619795180597	6.14958318326373	5.5923304822479	4.75418178625469	5.1785543018485	4.76862233380818	-1.86682887750283	4.10797422244665e-06	0.000186377491331156
Merged-chr15-100598616-1	chr15	100598116	100599116	+	621.0	f1_balb.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	1368.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	5.74540439910568	5.71528831569563	5.77510741534744	5.33689674268468	5.68927616857795	5.95273495334664	-0.123033527724927	0.717685404472729	0.927155544393689
Merged-chr9-111220746-4	chr9	111220241	111221241	+	874.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027742, intron 11 of 13)	intron (NM_027742, intron 11 of 13)	50867.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	3.1666034084308	3.38979395568703	3.16318894654744	3.07888747656507	3.20122485632628	3.34856210153062	-0.156099456776725	0.808038586853974	0.954605755203254
Merged-chr13-38528408-4	chr13	38527925	38528925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	59.0	NM_145367	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	7.52277128712029	7.49021160445872	7.43697360147261	7.2606623954918	6.63175948569098	7.14595098269916	-0.671986448466413	0.0145400160654344	0.129870835972437
Merged-chr3-94949962-3	chr3	94949461	94950461	+	869.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA8|LINE|L1	-4147.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	3.64069662897214	3.4749547188711	3.3173116314555	3.47226746918974	3.88380397562511	3.67628214830137	0.70844853370789	0.239833695085121	0.636770540094307
Merged-chr18-54849325-2	chr18	54848825	54849825	+	733.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	140855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.60996027245048	5.81021760510332	5.87502049651784	5.84353492703541	5.77099426128931	6.24921157995113	0.345070374191373	0.292610264461475	0.689849199032898
Merged-chr4-6381092-2	chr4	6380592	6381592	+	666.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_016807, exon 4 of 9)	exon (NM_016807, exon 4 of 9)	15412.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.05564821655525	4.16772883183112	4.44332912047549	4.28032788084796	4.23390017673334	4.62338291444452	0.421431408744768	0.379678909720321	0.762032001543936
Merged-chr2-4573874-3	chr2	4573387	4574387	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	14133.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.0707454051028	6.06664873536209	6.25995064120444	6.07007505838337	6.19746154883201	6.20025001352028	0.0496916852651077	0.861356693124127	0.96779377844034
Merged-chr2-112261935-4	chr2	112261433	112262433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025403)	promoter-TSS (NM_025403)	7.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	5.47582577763782	5.71403778519848	5.33805348175009	6.04613066785054	6.15059755493392	5.89354720795053	0.915460169638136	0.00487549953120532	0.0601989263974673
Merged-chr12-54795741-4	chr12	54795256	54796256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026998)	promoter-TSS (NM_026998)	-94.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	7.29099643611552	7.45642849033994	7.30812468074273	7.42687412758889	7.45635651848035	7.40931960173012	0.111461704531827	0.623359911847239	0.891380356166716
Merged-chr2-163747161-2	chr2	163746661	163747661	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	3078.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	2.42926289854204	2.39729205180912	2.77334745919022	2.53058345518533	2.5074026436536	2.60716575906192	0.0540320779400763	0.946430090084697	1
Merged-chr11-54100424-2	chr11	54099924	54100924	+	552.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	-500.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	3.39312276569086	3.39588836618191	3.1069099603132	3.33250287779045	2.9197881518126	3.24161394749619	-0.560391636351058	0.41106848877118	0.783840094880781
Merged-chr18-12735150-2	chr18	12734650	12735650	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 12 of 13)	intron (NM_028341, intron 12 of 13)	-6205.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	3.93809198016402	4.119973906522	4.39888136180895	4.2764921996047	4.34320524551416	4.69175141470493	0.761627642599513	0.119412370076295	0.461906210278851
Merged-chr9-25508975-4	chr9	25508440	25509440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	27343.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.89508802579773	6.5806942834706	6.27791786158042	6.72417909745466	6.97114784710791	6.53882286395628	0.228660126458894	0.45286060221645	0.809457484278845
Merged-chr13-60892982-4	chr13	60892485	60893485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	4462.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	7.25749049587295	7.56190504368157	7.47664192619292	7.44355613780638	7.84092001605918	7.31597896135502	0.184003265342043	0.485501556871972	0.827495041704636
Merged-chr5-122343936-4	chr5	122343468	122344468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	10227.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	5.42012248633274	5.66527771683287	5.31439093903336	5.28151699397955	5.5144072262177	5.21075110691625	-0.252073154067712	0.477987249097976	0.823548314517321
Merged-chr2-61586592-2	chr2	61586092	61587092	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011529, intron 1 of 7)	B3|SINE|B2	-6505.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	3.06358173634236	3.28712143464838	3.45335226903476	3.31571495637854	3.50432770036235	3.24542945537952	0.36791536791981	0.565839171420103	0.86688237163883
Merged-chr11-103174367-2	chr11	103173867	103174867	+	695.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	3229.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	3.58035614523277	3.46441292932994	3.80876456503674	3.43422640922513	3.45764000820787	3.4140607451667	-0.658463924031446	0.260013361483113	0.657579648868986
Merged-chr15-53474771-3	chr15	53474258	53475258	+	575.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128575.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.08859782666894	4.23283624595226	4.37934334135037	3.90309044462598	3.99927235641133	4.28002408137864	-0.484417524812838	0.325581164378128	0.718159390122652
Merged-chr11-80184854-1	chr11	80184354	80185354	+	862.0	f1_c57bl6.idr	intron (NM_028019, intron 1 of 4)	L1MB4|LINE|L1	982.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.65204008858643	6.76236065174049	6.57757636315904	6.66224656133589	6.62367462995003	6.33466886692711	-0.179515017821255	0.505057866975787	0.837928144581384
Merged-chr5-142368633-2	chr5	142368133	142369133	+	923.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32864.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	5.86697147289452	6.06817304610415	6.07389497515672	6.16309463193835	6.19552759132401	5.89979377129412	0.169950613673346	0.56934273945594	0.8688875602138
Merged-chr14-103349565-4	chr14	103349060	103350060	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2760.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	4.32521358377827	4.72222749682533	4.39903356322645	4.19414436560331	4.53151594383074	4.37787870793686	-0.300615946104019	0.51909709737178	0.845629761325035
Merged-chr17-5566897-3	chr17	5566396	5567396	+	805.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	74296.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.45262860447024	4.73954604861933	4.68559358036406	4.30693759569792	4.29581948746453	4.51514978462861	-0.658374294128159	0.133120564897455	0.488153715745778
Merged-chr7-122396126-3	chr7	122395614	122396614	+	811.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	106989.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.52671579600547	4.41606321387095	4.52620797829057	4.5424281644397	4.11465014821692	4.81614002213256	0.0543605328162858	0.90924538562648	0.979384717565381
Merged-chr4-105268530-4	chr4	105268022	105269022	+	912.5166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111175.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.82760158051175	4.48054059491699	4.47067919441445	4.82935543606051	4.70942744659534	4.30017256746881	0.0751747012872455	0.869664068299711	0.969866749756942
Merged-chr1-36070599-3	chr1	36070109	36071109	+	855.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2209.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.64970366392102	6.75205828166312	6.91546063744728	6.72105517296669	6.62078127395763	6.59301189953086	-0.193904568693651	0.452659829032208	0.809456767794566
Merged-chr11-48856606-4	chr11	48856116	48857116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	5.94075843524543	6.07396938122195	6.12962867813584	5.9866738019516	6.44791940589291	6.14740479589361	0.291921515341584	0.339515917220514	0.729313720985741
Merged-chr10-127593668-3	chr10	127593155	127594155	+	886.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 9 of 88)	intron (NM_008512, intron 9 of 88)	27493.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.78285091769065	6.6620579346536	6.8304618415332	6.91109119631516	6.90844355960199	6.76786648227946	0.174713096506574	0.484160059158076	0.826718452748311
Merged-chr14-45318153-2	chr14	45317653	45318653	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 1 of 15)	CpG	419.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	6.3025942274582	5.87937183002759	5.93233403820046	6.25589241704061	5.67497332092222	5.84455450497017	-0.190639655894557	0.58014634698854	0.87276422265422
Merged-chr11-46128737-3	chr11	46128250	46129250	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311209, intron 1 of 11)	intron (NM_001311209, intron 1 of 11)	846.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	2.42424489817839	2.44615334549741	2.2022895004246	2.50353588026422	2.28398827438543	2.54625940637957	0.510050239147906	0.558968898509586	1
Merged-chr1-171827867-4	chr1	171827362	171828362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11835.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	6.1836354049367	5.75331993580504	5.62383369008211	6.08362516696005	5.99234906476989	5.68745661723558	0.0918739966934346	0.788298631124433	0.948908830222811
Merged-chr9-65630214-2	chr9	65629714	65630714	+	946.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028030)	promoter-TSS (NM_028030)	-368.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	3.36702440029563	3.03115539731302	3.06990643948792	3.1445003598008	2.71233971288185	2.89221247551745	-1.09464154744386	0.140210753358423	0.500490762370556
Merged-chr8-109869145-4	chr8	109868648	109869648	+	950.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122594, intron 1 of 18)	CpG	545.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	6.39851950896999	6.22067455384369	6.0823081443016	6.37673782855865	5.85659406512039	6.027885260008	-0.239792700445416	0.446851217348908	0.806122541261987
Merged-chr17-36218918-4	chr17	36218439	36219439	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-28788.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	3.51374149684807	3.56571491448595	3.29753598819961	3.30977603554785	3.44072628189856	3.69116944435165	0.0557683512530393	0.927036316657225	0.983578869536024
Merged-chr3-93552519-4	chr3	93552032	93553032	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2585.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	4.44394090647147	4.45517556939989	4.49288471233546	4.22688530056348	3.93152512429138	4.35095367877688	-0.791416924068617	0.0918851485055537	0.403758947869144
Merged-chr14-64949017-3	chr14	64948362	64949362	+	799.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	995.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.24860023243329	5.02923491308822	5.21167539518213	5.10545158132784	4.75540550632029	5.24392891421356	-0.266429163898278	0.49297037811493	0.831208279358962
Merged-chr16-91613920-2	chr16	91613420	91614420	+	611.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_138664)	TTS (NM_138664)	5079.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	4.61480178346716	4.44779078130566	4.70360906623431	4.71277953045811	4.7078183494554	4.69169969860838	0.283685262771517	0.488843672695648	0.829423271678195
Merged-chr2-164078112-3	chr2	164077571	164078571	+	914.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	3893.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	4.66243127011306	4.48044040062178	4.53579466477744	4.80973543037907	4.65278817148728	4.27860422577063	0.110344517686431	0.804414208555795	0.953645244705356
Merged-chr10-19053764-4	chr10	19053271	19054271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-38361.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.30038292758835	5.24892093727754	5.32966797712967	5.11073174485221	5.00390891708111	4.9166794010503	-0.569140471293919	0.111986490597493	0.446979033416614
Merged-chr7-125613853-4	chr7	125613365	125614365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021887, intron 1 of 8)	L1MA9|LINE|L1	10436.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	6.0931663319606	5.9117173924377	6.15397503663599	5.87058668060925	5.91267633357389	6.02245426195013	-0.206831729393563	0.484684814718464	0.826994448591038
Merged-chr7-44849082-4	chr7	44848575	44849575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	4.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	7.80387957372724	7.7987353791672	7.57228738121734	7.94310091246463	7.87767588092618	7.27078380725307	0.0112411945456058	0.966908147814196	0.992418870149749
Merged-chr1-180822480-4	chr1	180821960	180822960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8855.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.6546580896878	4.82696084985548	4.79125687490663	4.81924651369494	4.9827355564159	4.65645161215883	0.179601722802573	0.655453244474633	0.904280301867709
Merged-chr11-97546487-4	chr11	97545977	97546977	+	810.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018873, intron 3 of 19)	CpG	28649.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	4.13750454326833	3.83620189932217	4.14050365034694	5.12836724924402	4.78585418682785	4.41076331356263	1.98768824002747	5.95550231484496e-05	0.0018252133945253
Merged-chr14-21194526-4	chr14	21194022	21195022	+	973.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134079, intron 4 of 10)	MER76|LTR|ERVL	118370.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.50138067817502	4.39075470009102	4.18376265495253	4.14539960743884	4.05604146729034	4.15662852144874	-0.703185198214582	0.132674080829367	0.487461691069456
Merged-chr17-7874373-1	chr17	7873873	7874873	+	585.0	f0_balb.idr	Intergenic	RLTR20A4|LTR|ERVK	-51627.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	3.87344903511034	3.96268656232807	3.67517218352674	3.79178565615367	3.67096028349635	3.90217267616911	-0.208368983002877	0.696572646399126	0.919511799366159
Merged-chr4-155488449-4	chr4	155487946	155488946	+	931.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2915.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	6.52644098936187	6.83558529658176	6.86353815328458	6.83190758333428	7.16478579305557	6.93597581642846	0.377362883226835	0.161364359146977	0.534230119599796
Merged-chr13-113612614-4	chr13	113612080	113613080	+	881.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5984.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.36340150561134	4.00495185661922	4.30183026693834	4.22552333864462	3.9363740149132	4.45116638385865	-0.0534038889254054	0.915684750291128	0.981189351373729
Merged-chr19-6401607-4	chr19	6401120	6402120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 1 of 16)	CpG	1037.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	6.39921992085522	6.39215283564803	6.83947216344976	6.82347995875121	6.83356550919101	6.82643645211207	0.442205274230494	0.108205996640826	0.439398218728357
Merged-chr2-4598112-2	chr2	4597612	4598612	+	953.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 7 of 11)	(TC)n|Simple_repeat|Simple_repeat	38358.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.30752894800277	2.39818564729104	2.72010032901574	2.62582209794357	2.53656547067895	2.67325803001773	0.758961782998351	0.35731026903029	1
Merged-chr2-119594264-4	chr2	119593780	119594780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015473)	promoter-TSS (NR_015473)	-16.0	NR_027832	66602.0	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	6.36283002628929	6.27230008616972	6.05595580564186	6.18931535217139	6.16873738245821	6.16170378470771	-0.121495611522193	0.668670899860794	0.909323356850588
Merged-chr14-67359269-4	chr14	67358767	67359767	+	955.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045961, intron 3 of 5)	intron (NR_045961, intron 3 of 5)	38475.0	NR_045961	73977.0	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	4.12470421729095	4.35525675930377	4.24002025647593	4.29385166833935	4.35802511061257	4.55831616138596	0.418055503885116	0.360870456235084	0.746938274913623
Merged-chr7-141170697-2	chr7	141170197	141171197	+	620.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	-1761.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	5.41708751200223	5.51189314033212	5.65858108384404	5.71169988032381	5.68126079690066	5.43563241679266	0.183954559728881	0.576602195612004	0.871628433480191
Merged-chr4-43046200-4	chr4	43045711	43046711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	9.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	6.84460933905637	6.56565272371716	6.20863607103332	6.64390151531191	6.71843949952155	6.33483744744108	0.0114957168991072	0.970209957061795	0.993401776171655
Merged-chr19-10022033-2	chr19	10021496	10022496	+	815.5	f0_balb.idr|f1_c57bl6.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	3802.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.27430516644737	5.51139642124408	5.71985265927249	5.53708679721796	5.27016200630403	5.37097241141157	-0.212977178370775	0.546108245618178	0.85849711034619
Merged-chr13-49364883-1	chr13	49364383	49365383	+	636.0	f0_balb.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	23334.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	2.20684964959614	2.17670294013742	2.42317820728836	2.39535168964129	2.1093457606882	2.30521054376401	0.0254161347376447	0.97693713428519	1
Merged-chr1-149892487-3	chr1	149891995	149892995	+	776.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	29944.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.02746359823006	4.02667549768642	4.04506539264448	3.57732601562599	3.90909185352399	3.87176814130122	-0.726145121179102	0.168186320124493	0.544615789419319
Merged-chr11-50286570-4	chr11	50286071	50287071	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	5765.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	6.10499315480035	6.22808635176689	6.58319977767754	6.34751020377877	6.29718240056457	6.70108671942384	0.234631302550169	0.444188469748081	0.804125800987714
Merged-chr11-94405465-3	chr11	94404969	94405969	+	957.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12493.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.72074821022239	3.10135730791493	3.34613796155034	3.16758221475289	2.83235815982766	2.85463443876698	-2.00004349720148	0.00875807133820052	0.0918504663358948
Merged-chr2-170131220-4	chr2	170130762	170131762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-42.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.24918341056868	6.77251605088457	7.04895325225078	7.34556429025732	7.03246398457556	7.16999990666514	0.224173642278718	0.405023460307941	0.779916895199977
Merged-chr16-31759556-4	chr16	31759051	31760051	+	947.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	5201.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	5.7747645955423	5.35716830076801	5.43795270334278	5.51689990096741	5.13381434480933	5.21243536808061	-0.471786754614134	0.198334923523603	0.586636393460951
Merged-chr4-43040366-4	chr4	43039868	43040868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-67.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	7.10382617933361	7.0051389291203	7.16946720025647	7.1254109089868	7.14898248817474	7.21514986220458	0.107309191742596	0.648234946172299	0.901726822360623
Merged-chr11-77983325-2	chr11	77982825	77983825	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_174852, exon 1 of 15)	exon (NM_174852, exon 1 of 15)	509.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	7.39252604888833	7.46601810341517	7.84293301474035	7.66584496389543	7.72906538123689	8.21700075123085	0.451692946103939	0.0988218983511486	0.419333642002316
Merged-chr1-131528968-1	chr1	131528468	131529468	+	581.0	f0_balb.idr	intron (NM_175382, intron 1 of 3)	intron (NM_175382, intron 1 of 3)	1065.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	4.6403816190883	4.44458063785475	4.41195134807158	4.40045967856794	4.47277617725489	4.29668856461409	-0.27513893629863	0.531313186804439	0.851563330256521
Merged-chr7-118114067-3	chr7	118113682	118114682	+	695.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1965.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.835317791586	4.6372375201027	4.77353592755511	4.91953582420859	4.84297093975302	4.54873623479814	0.0899031589925429	0.826325898164476	0.959130347937145
Merged-chr11-80173124-1	chr11	80172624	80173624	+	558.0	f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-10748.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.25422650607086	5.98700821606132	6.33346010365285	6.11851258789576	6.4957855047306	6.17295066373349	0.152933029258701	0.615253574219084	0.887866671887744
Merged-chr1-120099657-4	chr1	120099155	120100155	+	937.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21264.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	3.54557875276638	3.4164243150912	3.55644461667101	4.7115678606374	4.27886284404476	4.59762148194776	3.34830938216125	1.63713961233965e-08	1.40871885070897e-06
Merged-chr11-116616974-4	chr11	116616476	116617476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	7276.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	8.45424068075572	8.46653297779683	8.16506307182052	8.39232218204217	8.82675100472992	8.27428541932391	0.215071066664187	0.389063180958562	0.768867573000832
Merged-chr16-38404387-3	chr16	38403878	38404878	+	807.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	28767.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.98573411295255	4.01975635316965	3.83349752089363	3.67846427163615	3.50671383074726	3.85282719608212	-0.905066092586323	0.0947256921202317	0.410282410594984
Merged-chr1-36074528-2	chr1	36074028	36075028	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	6128.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	6.30027310603953	5.98805663253215	6.26806732222048	6.04511616094286	6.23046426358404	5.88186324818875	-0.198939458925334	0.514266743507953	0.843017108487006
Merged-chr2-172473210-2	chr2	172472710	172473710	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029608, intron 1 of 1)	intron (NM_029608, intron 1 of 1)	656.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	2.5021705464697	2.59468258723413	2.69341490573684	2.30107820766845	2.64487364744788	2.76584708814584	-0.0743416619736892	0.930048497260758	1
Merged-chr19-10202922-2	chr19	10202422	10203422	+	776.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271615, intron 1 of 1)	ID4_|SINE|ID	1021.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	5.38380622514687	5.37617647621836	5.191833325339	5.13905888019995	5.10862644907936	5.57915336009028	-0.0924327473686774	0.802171466960936	0.953161751100363
Merged-chr1-157445586-4	chr1	157445090	157446090	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12978.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	5.79271158870303	5.64970550442289	5.70456782354004	5.53295394309981	5.75898183946815	5.84155584626667	-0.00447855566783748	0.988741358445504	0.997426973334006
Merged-chr12-79135168-3	chr12	79134678	79135678	+	756.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	4390.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	5.88666734424728	5.70316162458035	6.19193068167723	4.77900410117708	4.62509709292564	4.72371189831614	-2.50409276522628	7.25371842124744e-11	9.89454758024848e-09
Merged-chr2-127336047-4	chr2	127335546	127336546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-113.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	7.73477452124841	7.48210488424236	7.3229197827463	7.64075143218601	7.82893211618442	7.39167798532718	0.160339618310279	0.532253613187249	0.851971173271146
Merged-chr5-72764150-3	chr5	72763679	72764679	+	954.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001113460, exon 14 of 19)	exon (NM_001113460, exon 14 of 19)	-11402.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	3.16265695287282	3.23520982578233	3.20976682284185	3.10193969924469	3.02033216934771	3.10728256344684	-0.564534518526095	0.378464188067298	0.7608986275521
Merged-chr2-90504206-4	chr2	90503695	90504695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25021.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.40419444214605	6.02611112449201	5.98152868319436	6.11868480392891	6.31167845088379	6.32258011152998	0.15792030397207	0.60224551579516	0.88229386901216
Merged-chr5-139387993-4	chr5	139387477	139388477	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1927.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	6.25232119643012	6.10438093504466	6.46781785079511	5.99292793614111	5.78564058422844	6.21800783141804	-0.471783753044994	0.127402772800403	0.47713250153821
Merged-chr13-56609545-4	chr13	56609065	56610065	+	979.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009369)	promoter-TSS (NM_009369)	-21.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.07280760581414	5.05101775569769	4.9730220137557	5.13391111540499	4.95829899782486	5.00198549332387	-0.00962423430809294	0.97911063847486	0.995161162196021
Merged-chr2-11547812-3	chr2	11547327	11548327	+	744.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6102.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.94595792942722	3.9147764952574	3.96169247929445	3.96945682876485	3.86221147408237	3.88148048035349	-0.10874674358674	0.827754809888312	0.959510695872191
Merged-chr1-132416650-6	chr1	132416163	132417163	+	668.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	-790.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	5.06088836432605	5.21050774902389	5.38401663968402	5.22126121178507	4.89094855955584	5.41812610870134	-0.075206157715667	0.845238038593417	0.963762476399877
Merged-chr7-90370448-4	chr7	90369976	90370976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-16505.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	3.87009991840862	3.46755559745039	3.40380721060396	3.43774936969214	3.52364369118301	3.47666808857696	-0.439448569004006	0.46652345624688	0.817586753758551
Merged-chr10-20040350-4	chr10	20039858	20040858	+	871.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	105832.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.84246777803872	5.93229204532634	5.3562155796085	5.65343911536234	5.86553426899508	5.75026655363051	0.0241621087897107	0.943873388100134	0.987495247303971
Merged-chr16-92672214-2	chr16	92671714	92672714	+	840.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 4 of 6)	MLT1C|LTR|ERVL-MaLR	25115.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	2.8465443890852	2.76943074840535	2.72548115949692	2.71813065167522	2.68830038974453	2.85971945769854	-0.160493109536787	0.824736391848872	0.958596193929081
Merged-chr4-117042012-1	chr4	117041512	117042512	+	862.0	f1_c57bl6.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22610.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	6.6704286536055	6.77919566995455	6.6314485181716	6.79749145964108	7.23131324596037	7.09676134631796	0.554939896590943	0.0364916054675533	0.235057398023003
Merged-chr19-44069391-4	chr19	44068886	44069886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164359, exon 2 of 12)	5' UTR (NM_001164359, exon 2 of 12)	300.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	7.27420955124903	7.1930514317439	7.20515517156564	7.13281135863665	7.26593244172437	7.10103546877906	-0.0772470169321109	0.741192300384609	0.934767099601415
Merged-chr4-47349923-4	chr4	47349411	47350411	+	956.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3311.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.23065661630164	4.38434493063951	4.50755255497734	4.47703574139515	4.32328335236206	4.12407375212893	-0.134519814087089	0.771225429501404	0.943589735529798
Merged-chr3-145691657-3	chr3	145691152	145692152	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-41667.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	4.96008630804401	5.12678865325274	5.40270798674313	5.14414017095539	4.85908848037026	5.29303761716341	-0.138263091001597	0.724030673286535	0.929178878081464
Merged-chr4-135239351-2	chr4	135238851	135239851	+	817.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	33409.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.94689517425142	4.65208497651891	4.53497125625422	4.62789384028309	4.57887888689461	4.46924840815962	-0.398092659612374	0.351921207979556	0.739579355531693
Merged-chr2-167747645-4	chr2	167747144	167748144	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56467.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.69324802715624	4.63390930963468	4.88051716865084	5.10454463638206	4.50197025140121	4.71947018807917	0.147645778145272	0.734839252112359	0.932617455907478
Merged-chr7-19698241-4	chr7	19697727	19698727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009696, exon 2 of 4)	exon (NM_009696, exon 2 of 4)	171.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	5.66279592011295	5.49613825808726	5.72320609144437	5.83525812390989	6.1358172823862	5.97985704453005	0.664181319300696	0.0339713241728873	0.225474403344775
Merged-chr19-4135709-3	chr19	4135235	4136235	+	753.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144532, exon 6 of 6)	3' UTR (NM_144532, exon 6 of 6)	3874.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	4.25539584701786	4.17410545501383	4.10652545111493	4.50696235489916	4.41655049548391	4.61421169112066	0.852084250714074	0.0584996222376279	0.312769810907186
Merged-chr6-88027569-1	chr6	88027069	88028069	+	622.0	f0_balb.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-7774.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.68578066299427	4.61892561699932	4.56727152602796	4.23567655335511	4.42530983075609	4.42249021178354	-0.658026847006262	0.126942334555882	0.476201152956395
Merged-chr4-3796894-2	chr4	3796394	3797394	+	891.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38761.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.1047167782044	2.9317455165343	3.14831726060871	2.94876096223311	2.90490977018168	3.32702695149673	0.019233059967016	0.977823804558772	0.994946721895498
Merged-chr2-128815705-4	chr2	128815204	128816204	+	894.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2599.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	5.51138532207817	5.43552822664577	5.1609041102576	5.32337557094389	5.08273485400079	4.92634701588569	-0.523312138164174	0.159416408403867	0.531609510679263
Merged-chr12-98284682-2	chr12	98284182	98285182	+	585.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16047.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	3.41759464338127	3.38478137874012	3.706237679526	3.33528304869981	3.38226910205459	3.47118171105745	-0.404393050488276	0.4974522179548	0.833640755144374
Merged-chr7-63999844-4	chr7	63999330	64000330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60915.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	5.52856692886669	5.85537986111138	5.80698474634642	5.49258343995212	5.58802947266815	5.74472899867938	-0.238341676134133	0.467103186739569	0.817784491371879
Merged-chr2-28479370-3	chr2	28478876	28479876	+	572.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17B|LTR|ERVK	11310.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	4.47408268320653	4.97090837276347	4.66656927065159	4.06367980753038	4.22020046325376	4.40459555303535	-1.25152573466832	0.00754964285022583	0.0825788196542018
Merged-chr7-78864602-4	chr7	78864111	78865111	+	893.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17400.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	3.64507495515324	3.84480517386184	4.05202098756969	3.96685831286656	3.87688582653452	4.11949666911482	0.417916764639881	0.426723234415397	0.793849313274879
Merged-chr7-80928570-4	chr7	80928070	80929070	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019951, intron 2 of 5)	intron (NM_019951, intron 2 of 5)	18980.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	2.55213370675628	2.44858496160286	2.69191899710737	2.41331944302462	2.54071032527013	2.45291454699752	-0.541619422646401	0.499299845414255	1
Merged-chr10-79924888-2	chr10	79924388	79925388	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2155.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	3.95052291309352	4.16273756832238	4.28234051247282	4.03688670188399	4.09579074950299	4.21942912983512	-0.0484469664873445	0.920422558239565	0.982360480259154
Merged-chr19-46520258-2	chr19	46519758	46520758	+	814.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18610.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	3.5196834880151	3.45975638308479	3.94042602156791	3.63350044903036	3.50977403957474	3.77648595523455	-0.0306369159301139	0.958269210270116	0.990000537228272
Merged-chr6-140811203-4	chr6	140810716	140811716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184331.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	2.91665566559204	2.86919773125999	2.98795963402203	2.80317801047112	2.86647126675546	3.17139834344374	0.129028239591104	0.854204334918871	0.965960851905444
Merged-chr18-60763091-4	chr18	60762612	60763612	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11484.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	7.16036172298427	7.20216425420229	7.12060105715658	6.93767174881813	7.08301804022418	6.84708800675747	-0.296656763478237	0.220300341924116	0.614692694772872
Merged-chr13-115130320-3	chr13	115129822	115130822	+	607.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28358.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.76309372541957	2.72227966417942	2.83266990920995	2.80672911667635	2.89932436601173	2.90528006011386	0.512785578924473	0.467596044371096	0.818056375344009
Merged-chr2-35135684-4	chr2	35135181	35136181	+	890.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_012018, exon 13 of 44)	exon (NM_012018, exon 13 of 44)	3447.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	3.97347964406586	4.01402263273383	4.48352174704022	3.97196856376086	3.99675905785664	4.04568368126431	-0.466851023613013	0.362087590285538	0.747675323428227
Merged-chr10-75772848-4	chr10	75772375	75773375	+	902.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010027, exon 2 of 3)	exon (NM_010027, exon 2 of 3)	499.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	5.09071247347164	5.31464893283182	4.93967072327103	5.11613115238394	5.04399915857423	4.72029501511686	-0.320666484815891	0.416648068694143	0.787543501962751
Merged-chr10-62502302-3	chr10	62501871	62502871	+	911.351868	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	5386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.49209757498754	4.40709214500239	4.90631380573524	5.02056803996618	5.1156125021823	5.19930699479653	1.14355168491143	0.00547185434550957	0.0653043683851349
Merged-chr11-58126770-4	chr11	58126216	58127216	+	919.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166669, intron 24 of 27)	intron (NM_001166669, intron 24 of 27)	22487.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	6.87286743811829	6.78823302175619	6.73837987861493	5.6817837483722	5.58264093169766	5.57884726406682	-2.00807002439803	1.94002288906829e-12	3.53327351640794e-10
Merged-chr8-105564433-2	chr8	105563933	105564933	+	759.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	1631.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	5.66039512403937	5.29190427560588	5.2738606050593	5.60207281715775	5.57252200647937	5.66478962475801	0.343213912151259	0.317293684812317	0.711216102754224
Merged-chr2-52859238-4	chr2	52858737	52859737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	1369.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.77250337377235	6.94487938337454	7.01987198022363	6.74084520785427	6.78674668771629	6.63611242793752	-0.286351361218011	0.259540215804485	0.657131020381498
Merged-chr7-109518179-2	chr7	109517679	109518679	+	870.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-1016.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	6.33228699083144	6.85535078768487	6.59816238004918	6.55817881469964	6.65600050395288	6.42406808989278	-0.097140140420714	0.737960053973115	0.933858424870961
Merged-chr2-127008702-4	chr2	127008189	127009189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175550)	promoter-TSS (NM_175550)	-22.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	5.51088552619422	5.39500489922808	5.66792551187695	5.40679661093409	5.46297042475218	5.48564393740349	-0.132841369218665	0.68825081980655	0.917193226920892
Merged-chr15-12326351-1	chr15	12325851	12326851	+	540.0	f1_balb.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	4855.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	2.3379036211038	2.30451484776898	2.63455933844024	2.29822319050454	2.3798368934608	2.33454519872217	-0.567505890260475	0.502218035369563	1
Merged-chr15-88860974-2	chr15	88860474	88861474	+	846.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1220.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	4.61069896878869	4.367313619486	4.1865722333312	4.3479456315073	4.25880025926862	4.10526803345476	-0.428488295919739	0.364778747256341	0.750028369485675
Merged-chr5-64336917-4	chr5	64336416	64337416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106559.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.92489897506322	7.16717655535348	7.11597598715258	6.5377159147117	7.15277343305594	6.58215157452191	-0.409990348417999	0.169230697613372	0.545943761877053
Merged-chr11-46479498-4	chr11	46478997	46479997	+	904.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	24566.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	5.14191452086496	5.38601935051099	5.38562578514361	4.68680064605574	4.84804069522381	4.85603935142691	-1.08173040208362	0.00427267232918109	0.0546534233922368
Merged-chr10-80034984-2	chr10	80034484	80035484	+	990.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025554)	TTS (NM_025554)	4675.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	3.81560561922259	3.86236460117373	4.23409941653452	3.63497791682976	3.61335016039405	4.09175957005598	-0.583137730365666	0.302397720322347	0.699062610540422
Merged-chr1-153488744-2	chr1	153488244	153489244	+	665.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1084.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	6.00014474173606	5.91592854516624	6.44330054125454	6.20534403793356	6.4816684007094	6.6009141565402	0.513854204102621	0.101755009112668	0.425704198212422
Merged-chr10-8778117-4	chr10	8777640	8778640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	107930.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.807075650334	6.61415381117365	6.65083777574916	6.4654183555006	6.42088870660636	6.77149139671166	-0.228388039069748	0.400604293941339	0.776877481303073
Merged-chr1-37472481-4	chr1	37471973	37472973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	16132.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	6.08159818748028	6.13592289081766	5.85290159572904	5.98356028619696	6.26107767247681	6.1491890132861	0.173963588351114	0.560269091203635	0.865206445804495
Merged-chr18-67390705-4	chr18	67390215	67391215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-16.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	7.80628107255394	7.94153549025135	7.65457503248899	7.47534792628205	7.55504788579279	7.30363295980056	-0.51554254391953	0.0271345945241214	0.196229388246401
Merged-chr4-107237887-2	chr4	107237387	107238387	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029985, intron 6 of 7)	intron (NM_029985, intron 6 of 7)	15646.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	3.4363424522011	3.7287217221031	3.61454531207991	3.34062592595897	3.25629203575062	3.73375674785517	-0.537639888386181	0.382630738292245	0.764118986456982
Merged-chr16-30364820-3	chr16	30364332	30365332	+	783.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128096, intron 3 of 33)	intron (NM_001128096, intron 3 of 33)	23698.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	3.68774992036678	3.46624622087455	3.80649976261234	3.67376743255809	3.55922955300573	3.67546164314821	-0.0702148222659535	0.900298719677897	0.976731943826834
Merged-chr10-99599561-1	chr10	99599061	99600061	+	974.3333130000001	f0_c57.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-9610.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.58202224769805	3.81901062627319	4.04896390947942	5.3779071420118	5.52448972314804	5.63417402444847	4.83429919602441	5.20527311229038e-16	1.73248146050983e-13
Merged-chr5-104946835-4	chr5	104946333	104947333	+	748.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030239, intron 13 of 15)	Lx8b|LINE|L1	35884.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.29418998797528	3.34587218428704	3.26909795218105	3.26832865501028	3.46239482450196	3.50654711206056	0.429279866237247	0.476841146147932	0.822962649471119
Merged-chr4-139213331-4	chr4	139212840	139213840	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	19229.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.99407837324104	6.91522505157284	6.57055052870179	7.38562428494737	7.50286736197394	6.85419541007173	0.663789031203463	0.0241829415136055	0.183011750565174
Merged-chr18-84354958-2	chr18	84354458	84355458	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234546.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	4.32073873852059	4.0448561967469	4.51872797036228	4.3610863024113	3.99483050460221	4.20644759555328	-0.295529387338103	0.550493721239101	0.860709619458349
Merged-chr2-122407723-6	chr2	122407176	122408176	+	794.236084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-33144.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	4.97706339509409	5.13507379441921	5.3549058330539	4.93684574436647	4.98858481231148	5.17727032772328	-0.260200329194525	0.489669769583861	0.829842607538523
Merged-chr12-104175832-3	chr12	104175342	104176342	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21970.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	4.59284207934411	4.48023496543642	4.22469949013136	5.39411141235623	5.54823574646806	5.05848757320426	1.99669127420153	4.12241664449955e-06	0.00018689322585862
Merged-chr12-16875016-1	chr12	16874516	16875516	+	882.0	f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-19962.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.14518907323234	7.48108039932421	7.08620164711441	6.5188618178188	6.83256024185683	6.9152775111997	-0.747895120374691	0.00617663677236814	0.0712480490962076
Merged-chr17-57285170-4	chr17	57284661	57285661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	6061.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.12597978234318	7.15145399080668	7.25675171693647	7.15363875910768	7.36234531848469	7.22101230207317	0.115638790723423	0.624283825476377	0.891935778467452
Merged-chr5-76522176-4	chr5	76521657	76522657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7150.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	5.25080929130472	5.35491637890027	5.58477890925877	5.45397504805936	5.58455126019943	5.32747059137423	0.144819218675975	0.674904497736354	0.911890915873117
Merged-chr7-99134081-4	chr7	99133584	99134584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	7060.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.82078972717555	7.05030363594889	6.80673075814736	6.74253892880772	7.05754682262937	6.93798976573233	0.0317453724034227	0.903030053765096	0.977727351806562
Merged-chr2-60881796-2	chr2	60881296	60882296	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141931)	promoter-TSS (NM_001141931)	-358.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.45823646524676	6.00073712273528	6.55920148062852	6.66094206421542	6.22019223787269	6.46418974995069	0.16784423969789	0.595698825018357	0.879596630230779
Merged-chr16-4370751-2	chr16	4370251	4371251	+	934.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49747.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	6.08072071525263	6.03961241548717	5.47996032626235	5.56487974484329	5.4480996144892	5.34786945841974	-0.821181323095166	0.0191925059873043	0.15722771318274
Merged-chr7-126794877-2	chr7	126794377	126795377	+	715.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001177308)	TTS (NM_001177308)	-2330.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	4.25961535765167	3.95555599697046	4.42307513747681	4.399785415522	4.44626539114926	4.88949511210107	0.950017399544492	0.0510309731903859	0.28783848663294
Merged-chr15-12322988-4	chr15	12322491	12323491	+	665.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1495.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	5.71727130638506	5.67422448897709	5.45083926652226	5.49144040394566	5.7088615778956	5.21461088304753	-0.229707139672123	0.51336930321669	0.842549813251827
Merged-chr5-72330530-4	chr5	72330052	72331052	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 15 of 21)	intron (NM_001122756, intron 15 of 21)	127209.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.88930160647889	3.97147066110931	3.93033295587635	4.10890933169227	3.93253476066635	3.84558223452111	0.116718259185528	0.816755435238913	0.956754861188725
Merged-chr12-73716035-4	chr12	73715534	73716534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	131238.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.66092400111921	5.79780883244889	5.56183756591959	4.83305207173493	4.86403342616746	4.94257234056064	-1.6336357598563	3.95944557500374e-06	0.000180425820046501
Merged-chr7-110006591-4	chr7	110006047	110007047	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037959)	promoter-TSS (NR_037959)	99.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	6.29893571281232	6.20744215351961	6.40162728756258	6.33441737058715	6.43374226304406	6.38701180766857	0.145664409648656	0.591184098041697	0.877431158663006
Merged-chr1-93826376-2	chr1	93825876	93826876	+	610.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_178882, exon 2 of 10)	exon (NM_178882, exon 2 of 10)	1136.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	3.29549665678802	3.73585564108972	3.550933781794	3.67758381779442	3.62446748228828	4.01344732824626	0.789698299773944	0.188347462335888	0.573856303406978
Merged-chr11-58217761-2	chr11	58217224	58218224	+	695.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_019440, intron 1 of 1)	intron (NM_019440, intron 1 of 1)	2747.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	3.65048219399114	3.20924420272957	3.44614587134792	3.80539182325473	3.54221231766881	3.88176471837603	1.03448907845235	0.0906745518231653	0.400621283981532
Merged-chr6-89338401-2	chr6	89337901	89338901	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	24212.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.957080342766	3.98148092048422	3.97062712757215	4.11539254643889	3.63952143396914	3.55010578451447	-0.535983144621563	0.342325115512872	0.731283521951228
Merged-chr16-4874480-2	chr16	4873980	4874980	+	629.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_145359)	TTS (NM_145359)	5371.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	2.62513092887439	2.40961718676188	2.71388725939846	2.63136720492687	2.40748585299362	2.84587385079321	0.275655037252417	0.734980439538537	0.932617455907478
Merged-chr3-95493927-3	chr3	95493382	95494382	+	622.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037737, intron 20 of 21)	intron (NM_001037737, intron 20 of 21)	-5328.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	4.99483223684995	4.95643062492382	4.91654442568008	5.30556922561637	5.31589969431783	5.29200088630928	0.719045871477189	0.0428494791550162	0.259542830197797
Merged-chr5-24166294-4	chr5	24165801	24166801	+	891.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153092, intron 1 of 6)	RMER6A|LTR|ERVK	1338.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	5.25615469511945	5.30736956120313	4.79988614875096	5.65306079916699	5.76110454097734	5.48622132680687	0.944061908373192	0.0116494380944428	0.111957316350473
Merged-chr3-16184680-4	chr3	16184158	16185158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1493.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	7.78937354025926	8.23635243428031	7.26738371974797	7.83456829779976	8.18240205213983	7.45725099545411	0.0452685816834443	0.89068866509518	0.974547949258886
Merged-chr3-59225592-3	chr3	59225084	59226084	+	770.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14702.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	4.62478193072878	4.54871735049674	4.69437170568606	4.48063911821192	4.43518733896445	5.00095832086898	0.0725020871982804	0.870758442415822	0.970219723031357
Merged-chr8-71668815-3	chr8	71668304	71669304	+	969.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	2953.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	5.31453715412085	5.0324675806196	5.19832691591812	5.94171177752881	5.78476505840991	5.76488936855665	1.23194954847731	0.000241780085616312	0.00583469761135792
Merged-chr19-59073259-4	chr19	59072739	59073739	+	949.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	2830.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	5.18354802502508	5.33256046928815	5.05459678217136	4.80771913686798	5.07359347799565	4.85814185984084	-0.578919830697232	0.128773172987083	0.479799601167289
Merged-chr7-44374468-4	chr7	44373957	44374957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027049, exon 2 of 6)	5' UTR (NM_027049, exon 2 of 6)	573.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	5.79496473374383	5.82729857565767	5.65072089954865	5.96444793024948	5.52475610958872	5.84356121584926	0.0320043004261487	0.922092275826868	0.982542868764899
Merged-chr12-86045637-2	chr12	86045137	86046137	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	33404.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	5.70987271396945	6.03263888695742	5.66706047863691	5.89939521782831	6.18036304261543	6.00926409705767	0.379791714046949	0.232469574571611	0.62876506179153
Merged-chr7-80827862-1	chr7	80827362	80828362	+	657.0	f0_balb.idr	Intergenic	Intergenic	-24531.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.09568094492294	3.93424223194438	3.67449807026104	3.9786111598815	3.74101224741672	3.90810321816479	-0.14012641153046	0.793943323652557	0.950531747588938
Merged-chr13-112137773-4	chr13	112137246	112138246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-150705.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.73571622918714	5.37859283816732	5.39481641124644	5.79450950366655	6.16267317658776	5.61327984285182	0.675950246133895	0.0561409519288986	0.305199028361414
Merged-chr3-105050058-4	chr3	105049534	105050534	+	950.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2919.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.7601955409146	5.89363498759337	6.14985822349578	6.33508678904953	6.73815995790974	6.12361273490253	0.844786767205402	0.00901947319941161	0.0937796626019023
Merged-chr13-21974324-4	chr13	21973827	21974827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6854.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	6.55897632789828	7.1219826374377	6.85832085079188	6.88143795072316	7.35523954632131	7.22832941620662	0.459882983951686	0.115909841459695	0.454570678615181
Merged-chr19-5837696-4	chr19	5837194	5838194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	7784.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	6.05971765002192	6.18654462799425	6.27099498760737	5.83994188186192	5.92989790042612	5.71273408828131	-0.574108837776981	0.0543525090173578	0.299381422526807
Merged-chr18-32816789-4	chr18	32816284	32817284	+	883.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033206)	promoter-TSS (NR_033206)	-76.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	4.34244139553172	4.47088506366916	4.34666026143482	4.14503832132058	4.35700377593417	4.41386940753248	-0.214459961499599	0.634398298060595	0.896346727934273
Merged-chr7-100963325-1	chr7	100962825	100963825	+	750.666687	f1_balb.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	1041.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.28365616012838	6.63145884229741	6.48283926381481	6.17599652898762	6.34837458431497	6.2991058350213	-0.322330967071879	0.254205789805656	0.651179145391095
Merged-chr5-100416300-4	chr5	100415784	100416784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-50.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	7.32969885466879	7.27370882973418	7.28702914140185	7.04042129686832	6.91476500295673	6.81810997038288	-0.552793395508027	0.0203761858761201	0.163461149109742
Merged-chr14-64842676-1	chr14	64842176	64843176	+	636.5	f0_balb.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	107181.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	4.20457112795501	4.42392898236841	4.07730038603351	3.82159499232673	3.74731187742933	4.2376734557532	-0.892177501746599	0.0891374566630583	0.396669258680404
Merged-chr19-8786328-4	chr19	8785845	8786845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177798)	promoter-TSS (NM_001177798)	-29.0	NM_146092	225895.0	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	7.28016927834165	7.42700321224528	6.78726470824643	7.4219243074366	7.3173769700313	6.87861076306636	0.0461722088176175	0.876843599627573	0.971407825796496
Merged-chr5-66106596-4	chr5	66106097	66107097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	PB1D7|SINE|Alu	-8418.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.76804335142237	7.65083505782241	7.66591263523717	7.71906020089206	7.93450564267819	7.86733270739319	0.212861054785378	0.332988795937324	0.723927708416112
Merged-chr12-84172018-2	chr12	84171498	84172498	+	675.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	22017.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	4.65021937732512	4.83108151119223	4.77468859531532	4.60558931573877	4.56903333323273	4.42848919734232	-0.508375133381658	0.219479984755614	0.613724448754633
Merged-chr10-80317866-2	chr10	80317366	80318366	+	636.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025521)	TTS (NM_025521)	2682.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	2.19859071544575	2.12932232173137	2.19138776736225	2.34281053904491	2.20262353586458	2.82540672364678	2.0105707486832	0.0316576039068028	1
Merged-chr15-88513835-2	chr15	88513335	88514335	+	689.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-86467.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	5.39895468144631	5.75348172946876	5.68359943061674	5.66680581102547	5.97204513236529	5.87120343277071	0.412114364961624	0.210503982497491	0.602621125710907
Merged-chr2-46251755-4	chr2	46251252	46252252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	555147.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.2566358990839	3.53714651023197	3.32772873298629	3.40523224008762	3.60250022990136	3.45619145059415	0.420421140034447	0.487027350223038	0.828231456470534
Merged-chr7-123321346-2	chr7	123320846	123321846	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 6 of 19)	intron (NM_001316713, intron 6 of 19)	48569.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.55775464568571	4.52083202456846	4.69865118224284	4.5394905981766	4.54808538554367	4.60833161904409	-0.0606410522008264	0.883760190377457	0.973446302281334
Merged-chr12-80924405-4	chr12	80923906	80924906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033786)	promoter-TSS (NR_033786)	41.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	5.70477864047704	5.50511703064458	5.65034070459067	5.77719194429115	5.74222659482809	5.88833856186046	0.325642710033188	0.298093223516074	0.6948994492723
Merged-chr4-134923576-4	chr4	134923067	134924067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-58.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	8.46290507303409	8.41326682805835	8.18077348669398	8.29528353852415	8.66664812474621	8.33301457475825	0.119817369560809	0.603343064996312	0.882544198306255
Merged-chr11-37043361-4	chr11	37042873	37043873	+	988.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99132.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	5.17302941968193	5.09531235057143	5.10490122362865	5.54865880255959	5.56740100576766	5.09802624295404	0.61792945737911	0.090063108586738	0.398976262539812
Merged-chr10-78160155-4	chr10	78159655	78160655	+	974.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9613.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.21469200134308	3.98150867710772	4.31312685455642	4.1660892159587	4.23759281390457	4.10888558933197	0.0174561028284245	0.970916351610245	0.993599367110128
Merged-chr13-94387063-1	chr13	94386563	94387563	+	750.0	f0_balb.idr	intron (NM_009680, intron 1 of 26)	L1MD2|LINE|L1	28103.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	3.57192272577149	3.37787336392525	3.39139054734234	3.46650736335591	3.55340305748858	3.72834739632527	0.470249005460516	0.419249276771002	0.788894025815503
Merged-chr9-72528230-1	chr9	72527730	72528730	+	792.666687	f0_balb.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	3628.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	3.55815950242513	3.43975647186807	3.75055841333179	2.93274856829084	3.26525953579078	3.36281010279237	-1.52479138929194	0.0256385833826439	0.189750824355992
Merged-chr15-89429955-4	chr15	89429454	89430454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-27.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	8.48006176618101	9.10651638863785	8.51846845337105	8.5222630181225	8.92870084611869	8.4322743797107	-0.122738707532146	0.655813873281421	0.904417939008229
Merged-chr8-105859605-2	chr8	105859105	105860105	+	835.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-928.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	6.39616281469664	6.47156260075332	6.58909907532125	6.69269502578691	7.14949531234624	6.4874856222891	0.533868946062483	0.0743543869676522	0.358689738575861
Merged-chr15-79441824-11	chr15	79441275	79442275	+	901.0985109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289899)	promoter-TSS (NM_001289899)	43.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	7.66507387741459	7.43695810204755	7.0389470729767	7.58784413015047	6.89497759435715	6.93753446594428	-0.33575691330745	0.289132094930054	0.686633011876864
Merged-chr7-107594576-4	chr7	107594066	107595066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-485.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	7.52019244436286	7.4001180820943	7.56071552069313	7.60303467747562	7.93004751603297	7.51848823902593	0.308694548719059	0.202560889803046	0.59252027125208
Merged-chr12-91788694-2	chr12	91788194	91789194	+	954.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2258.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	2.38094229571044	2.2332655761698	2.61158205467378	2.53182521091184	2.40391285805923	2.74459793716727	0.901678973156473	0.288940571020124	1
Merged-chr15-97373973-4	chr15	97373468	97374468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172293, exon 5 of 6)	5' UTR (NM_172293, exon 5 of 6)	-126681.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	7.74000809746406	7.79119265816181	7.42428039324892	7.93718802549521	8.27017061767199	7.70007896784093	0.480150488328801	0.0678563068961803	0.340891600810081
Merged-chr3-127790529-4	chr3	127790042	127791042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356430)	promoter-TSS (NM_001356430)	-115.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	8.64567395355392	8.45274872828546	8.38155244694863	8.45744299130892	8.6432167911397	8.30321886799963	-0.027943788561231	0.899570901089618	0.976656120908248
Merged-chr17-71144480-4	chr17	71143980	71144980	+	912.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39052.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.95174687889312	4.95798580977518	4.87072770935731	4.51443453641454	4.45415410907473	5.03785750386114	-0.568602839984337	0.185295215846153	0.569470877644115
Merged-chr13-113488437-2	chr13	113487937	113488937	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	RMER19C|LTR|ERVK	14407.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.24196151633235	3.21842080992498	3.41421573431775	3.5782201781888	3.31948823675385	3.1961182720395	0.344798774538712	0.581915816403578	0.873484978987509
Merged-chr6-122627708-2	chr6	122627228	122628228	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139218, intron 1 of 3)	intron (NM_139218, intron 1 of 3)	1304.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	4.36783921148413	4.41605617367453	4.56502103059214	5.32521876213768	5.54510264056117	5.80640184213021	2.45608369441393	1.19838362944904e-09	1.30517153192665e-07
Merged-chr10-117792298-1	chr10	117791798	117792798	+	854.6666869999999	f0_balb.idr	intron (NM_134010, intron 1 of 27)	CpG	407.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	6.44970784970832	6.55315068443051	6.49927727424029	6.41217159548253	6.54542916126276	6.24899520331484	-0.134871742707281	0.619692709177303	0.889868376148509
Merged-chr5-86071769-4	chr5	86071265	86072265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019992)	promoter-TSS (NM_019992)	19.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	5.24278834345135	5.19744468479811	5.47372317312741	5.85753701582351	5.90974600515555	5.85320208651469	1.08387703196099	0.000770001104645469	0.0147491371812477
Merged-chr4-130823832-2	chr4	130823332	130824332	+	932.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011520, exon 5 of 5)	3' UTR (NM_011520, exon 5 of 5)	31295.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.05918299506786	3.93427566677323	4.50881791335138	4.29227077072727	4.04141310431089	4.49809531238396	0.27740765755031	0.591314384057596	0.877543113160171
Merged-chr15-77839061-4	chr15	77838556	77839556	+	978.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	3119.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.27492495390372	6.36281247607878	6.45125748212435	6.47351490831208	6.46075956133911	6.75294592677103	0.324851142991675	0.235931169863249	0.632261024837056
Merged-chr4-150582195-1	chr4	150581695	150582695	+	548.0	f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	69979.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.02571700462895	4.82986694365351	4.9365319415606	4.99100622937518	5.03258224350486	5.00159750124687	0.16708695058564	0.654589171050343	0.903872559164033
Merged-chr6-83327137-2	chr6	83326637	83327637	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145571, intron 1 of 5)	L1M4|LINE|L1	1098.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	3.65774812854463	3.75524461998824	3.88738537050053	4.09955076046703	3.96474548625599	3.95687865359816	0.767435178265263	0.134865094103269	0.490893184533435
Merged-chr11-103967350-2	chr11	103966847	103967847	+	986.0	f0_balb.idr|f0_c57.idr	5' UTR (NM_007477, exon 1 of 5)	5' UTR (NM_007477, exon 1 of 5)	476.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	8.442244369945	8.46424740018396	8.12135002586178	8.02181717487729	8.3350725936883	8.47068423943033	-0.0959750522101657	0.688977360907417	0.917235946766438
Merged-chr19-45060356-4	chr19	45059857	45060857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	12781.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	5.0930995094281	4.79771092040632	5.1289941421436	4.87717698943593	4.49822578351328	4.69182592069566	-0.7122853086718	0.0847423350058229	0.385482189545403
Merged-chr5-99381161-4	chr5	99380657	99381657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	RMER1B|Other|Other	-128230.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	8.22202173438193	8.56992823177701	8.06368411144845	8.17699440096572	8.52242464458458	7.86426723165908	-0.116466429783235	0.669956972600168	0.909823240621416
Merged-chr2-181193734-2	chr2	181193234	181194234	+	628.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	6487.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	4.72675764311976	4.87499096265792	4.58236123764024	4.92620752038965	5.06840830694023	4.93151750323049	0.530693942018882	0.178828324299098	0.56015461558046
Merged-chr4-116644481-3	chr4	116643955	116644955	+	835.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021473, intron 2 of 8)	B3A|SINE|B2	7219.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	3.15852209781415	3.19409492497929	3.35712658201817	3.38713769038659	3.17763946305594	3.26103714055146	0.173837684539555	0.780592335835545	0.946078518476608
Merged-chr7-101385501-4	chr7	101385003	101386003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-23.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.96893942795388	6.76741950037573	6.79489008741136	6.88479364103086	7.04934623767226	6.53121057644733	0.00650403550914822	0.98117984999956	0.995687678606673
Merged-chr10-85871852-4	chr10	85871349	85872349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133993)	promoter-TSS (NM_133993)	18.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	6.17328534376925	6.24842556330109	6.26318694171473	6.28695623431802	6.20448070749562	5.99488033463012	-0.0869753666615833	0.759432574706757	0.94043121249196
Merged-chr5-35584438-4	chr5	35583931	35584931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030721, intron 2 of 18)	intron (NM_030721, intron 2 of 18)	1397.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	7.05618370384205	7.25292759071807	6.89344579217893	7.07499777441144	7.36398525236891	6.92212782124042	0.0921711934793888	0.731285366472471	0.931357644172417
Merged-chr11-84513586-4	chr11	84513079	84514079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019816)	promoter-TSS (NM_019816)	-78.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	6.90871205124675	7.50471058308164	7.00604152335571	6.92097042682034	6.96239946063309	6.61062575229909	-0.496584100899261	0.090912757920529	0.401303822608385
Merged-chr1-52630689-4	chr1	52630188	52631188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	-17.0	NR_024590	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	6.07828680809654	6.01181532163932	5.94878216786416	6.29408410065696	6.22297210339312	5.85861982723377	0.226552694672302	0.45342525130739	0.809761744660326
Merged-chr5-139388726-2	chr5	139388226	139389226	+	918.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1178.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	6.27028225377498	6.74003389210045	6.72004242889647	6.1655865371899	6.06685197859109	6.3240718421885	-0.67148896644219	0.0247080325591007	0.185634850851256
Merged-chr3-95694591-4	chr3	95694098	95695098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6681.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	5.38074587332546	5.22870178455471	4.91638556553609	5.69676191566177	5.43554280127016	5.40959726109977	0.624349705259582	0.0900434459060663	0.398938091847133
Merged-chr16-14361576-4	chr16	14361055	14362055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-3.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	7.70168785262351	7.91547810132781	7.87228606454365	7.95261803849022	8.05777908437638	7.66884969355319	0.112306258367787	0.631007169731995	0.894974662240063
Merged-chr18-34958726-8	chr18	34958223	34959223	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4372.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	7.27444518734046	7.54873714608263	7.54524544455859	7.23316578858065	7.62782544818054	7.34424780348571	-0.0598139430559127	0.81289267762275	0.955841430155734
Merged-chr2-127831525-2	chr2	127831025	127832025	+	560.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009772, intron 1 of 24)	CpG	334.0	NM_001113179	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	4.68815455248372	4.19837226218626	4.07557095593757	5.02782942469968	4.64386550651505	4.671935166816	1.04353601695858	0.0346258320928141	0.228119258652326
Merged-chr11-114542322-3	chr11	114541820	114542820	+	986.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93460.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	2.93414253761483	2.8571958321472	3.04058915104366	4.02428818984926	3.59003538365427	3.55058978257257	3.73860853922051	2.20008613935923e-06	0.000108708294230287
Merged-chr1-167349322-4	chr1	167348845	167349845	+	986.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	-646.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.98939636185229	6.4474020303438	6.54295491524872	6.07862527895574	5.95566267159944	5.98068487951478	-0.569521724142855	0.0683891089577449	0.342122345827935
Merged-chr3-144982855-4	chr3	144982345	144983345	+	911.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-7800.0	NM_207208	99663.0	Mm.442050	NM_207208	ENSMUSG00000068547	Clca4a	9130020L07Rik|AI504701|Clca4|Clca6	chloride channel accessory 4A	protein-coding	3.03379774842028	3.02928059798485	3.53733887643173	3.46019689486138	3.25935351144896	3.75056750039511	1.1027231596581	0.106881506649053	0.436442872123196
Merged-chr5-129002791-4	chr5	129002298	129003298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	5774.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	7.13320513407608	7.33551326995708	6.918642289987	6.81892448276132	7.09880528330861	6.73005588040805	-0.376501655301668	0.165614276994204	0.540769640942341
Merged-chr6-97431736-4	chr6	97431222	97432222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	27564.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.15352743782448	7.99462893724628	7.93629033302917	7.87203767790366	8.25723172551013	7.59267653380744	-0.121268009301235	0.642353331498102	0.899398873915991
Merged-chr11-70808145-2	chr11	70807645	70808645	+	839.6749880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	LTR85a|LTR|Gypsy?	4416.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	4.38850938286195	4.92861585704679	5.19036033866774	4.69187945764625	4.94008132486535	5.25296403805055	0.228321079191985	0.623798918506738	0.891609729641994
Merged-chr6-82774541-4	chr6	82774039	82775039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-85.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	7.85513007003396	8.26028805760688	7.63165606944463	8.02742225880038	8.31415598465212	7.61823583935069	0.108625013731793	0.70933556796534	0.923955477167413
Merged-chr5-134184511-4	chr5	134184005	134185005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359852, intron 1 of 14)	CpG	467.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	8.05313957897723	8.58160979917033	7.92583898107075	8.00460145181444	8.12968634044207	7.79654188515294	-0.336118217970806	0.210497972111644	0.602621125710907
Merged-chr4-150586423-3	chr4	150585914	150586914	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	65760.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.89822753567176	6.04771937886353	5.75246247669996	6.39444050497313	6.46348486424397	6.02262166794212	0.686919257384723	0.0260340148231092	0.191431451520084
Merged-chr6-16889644-4	chr6	16889176	16890176	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	8765.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.93722905439949	6.28563896414494	6.20347462988585	5.97594728075445	5.99760011877357	5.95723146780661	-0.29388447800403	0.323870423751651	0.717120257969349
Merged-chr11-51263537-3	chr11	51263068	51264068	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358279)	promoter-TSS (NM_001358279)	94.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	9.2455122143067	9.72964234913711	9.12815917911975	9.14080036911467	9.46525230795864	9.08161493723982	-0.211279220381109	0.402673435419999	0.778169663804428
Merged-chr9-123942224-4	chr9	123941753	123942753	+	957.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26439.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	6.48353510230892	6.48089746077327	6.65592264888959	6.2303037607211	6.19732193005068	6.37369760876867	-0.448912411805983	0.0977653534244132	0.416979831243968
Merged-chr1-155417474-4	chr1	155416957	155417957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-13.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	6.48042591760267	6.08890254533386	6.14210169143518	6.19396979606307	6.1320556144156	6.43743097402567	-0.00255781750412618	0.993230717744851	0.998651348330892
Merged-chr10-26373116-4	chr10	26372596	26373596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172787, intron 1 of 21)	intron (NM_172787, intron 1 of 21)	976.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	3.39402650919372	3.30741694073088	3.64992123678047	3.28175936848933	3.33189218446015	3.29701805991656	-0.565871968526716	0.354854805621726	0.741885223458274
Merged-chr3-159495391-4	chr3	159494898	159495898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029523)	promoter-TSS (NM_029523)	-35.0	NM_029523	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	4.00507413122011	3.71157810290813	3.67877440489105	4.16053305588308	4.19371968561166	4.11630902888687	1.03224621308208	0.0466873036811227	0.273397853419545
Merged-chr2-160176812-2	chr2	160176312	160177312	+	699.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150682.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	3.49238034106863	3.37726376301931	3.41825280563818	3.30039035351532	3.2309989926835	3.59362874762898	-0.21176081177479	0.727647797276446	0.930204882969987
Merged-chr1-121307324-3	chr1	121306832	121307832	+	687.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271532, intron 2 of 4)	intron (NM_001271532, intron 2 of 4)	20346.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	3.11270309374803	2.64957703047625	3.03756250824871	2.88084684515484	2.72817787237126	2.74417244052817	-0.799614066032935	0.292739527984696	0.689885476081214
Merged-chr10-75289607-3	chr10	75289107	75290107	+	835.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-27270.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	3.32506456438784	3.06427530025538	3.43086342346493	3.20968622525485	3.26416930527332	3.39509504594079	0.0481060147256513	0.939580912580935	0.986720663284284
Merged-chr7-122322622-2	chr7	122322122	122323122	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	33497.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.22965962392102	4.29238503212888	4.20424704094903	4.55329856308711	4.30659515694767	4.45225962452272	0.504661712410552	0.261482360175717	0.659232278973625
Merged-chr16-91376839-3	chr16	91376340	91377340	+	994.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	4057.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.26480799994326	6.37401240117206	6.61608800936916	6.12228884481657	6.37288890337606	6.30787633442043	-0.23580777373757	0.411349776500857	0.783877099438722
Merged-chr17-5800569-4	chr17	5800082	5801082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	1092.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.08302763996264	6.0694037276652	6.03327383668102	6.31635188654144	6.28961400547661	6.11698706393267	0.314702502161535	0.263473211820831	0.661389537791888
Merged-chr17-44710069-4	chr17	44709574	44710574	+	969.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	26102.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	2.54877658655504	2.83550203194944	2.91522977960564	2.66211188864278	2.33854470516896	2.56021840213958	-1.42710571247495	0.0902870150071765	0.399521481850518
Merged-chr9-100876150-4	chr9	100875661	100876661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	158723.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	3.77032029606861	3.46476047643408	3.42895273969813	3.50169995739172	3.54617795263112	3.66510553763544	0.000242428581305514	0.999667691549584	0.999920050950963
Merged-chr15-79883471-4	chr15	79882956	79883956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-8952.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	4.75209993015178	4.72442902650314	4.80427526306737	4.34904155112169	3.99276809665724	4.48320168300582	-1.22144849070986	0.00739976971384751	0.081433677866661
Merged-chr15-5460135-2	chr15	5459635	5460635	+	694.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36183.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	2.8190821819285	2.82152069772939	3.23451691702781	3.19435841071159	3.1542530196517	3.35886888915309	1.21402212189295	0.0845207647295281	0.384916194604268
Merged-chr11-4200209-2	chr11	4199709	4200709	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	13376.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	2.64038449454795	2.47092187545036	2.43460068313677	2.65807837825118	2.54389291111204	2.76504070969148	0.760587993838617	0.33678114443583	1
Merged-chr14-47395194-2	chr14	47394694	47395694	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 14 of 18)	intron (NM_144553, intron 14 of 18)	21334.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	3.90581726570931	3.61095607774816	3.98856906872008	3.34286153982843	3.03895313766734	3.28076253147482	-2.46165700847737	0.000200528373949132	0.00502880197093411
Merged-chr8-11471524-4	chr8	11471036	11472036	+	886.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	L1M2|LINE|L1	-6393.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.66938942187804	4.74719686502552	4.74849228796312	4.7649176221027	4.69907847009594	5.05900243287575	0.269255213766026	0.504683719354722	0.837806481766929
Merged-chr5-64804185-4	chr5	64803695	64804695	+	984.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	CpG	672.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.47057111246652	7.51952478272935	7.71708172295517	7.72139844138854	7.63849321999158	7.86337090863907	0.249053502440924	0.275820254318156	0.673242318833586
Merged-chr4-152165434-8	chr4	152164949	152165949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6582.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	5.47658221145908	5.41488392735415	5.78526745219188	5.72795263990658	5.7657332923338	5.87016849015808	0.424625854365748	0.191061471402716	0.577620278039356
Merged-chr10-44474416-4	chr10	44473912	44474912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15664.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.46705041954119	4.15967920618489	4.24000433570459	4.26291892184822	4.10175103350114	4.70864339161106	0.194865561062931	0.694306435235313	0.919210273513843
Merged-chr3-88745159-4	chr3	88744673	88745673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	27426.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	5.37305579614128	5.38137831753384	5.32191206558516	5.45657132598612	5.38438039757597	5.2217784565335	0.00545088972379426	0.987176620273842	0.997161899445921
Merged-chr11-98769703-2	chr11	98769203	98770203	+	677.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001313983)	TTS (NM_001313983)	5674.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	2.48926649520284	2.45611825681232	2.78408933703111	2.73161626743785	2.44915410019958	2.7981441039682	0.470089024804774	0.558651707710081	0.864744077984264
Merged-chr13-91701773-2	chr13	91701273	91702273	+	639.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360775)	TTS (NM_001360775)	-39748.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	3.94835838613429	3.80459323312832	4.00684382330396	3.58140551191243	3.75871222800299	4.02898183752489	-0.3905007632796	0.469287053056352	0.818943090863774
Merged-chr11-67604614-4	chr11	67604123	67605123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	8068.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.62472893231033	3.50929681039892	3.56560634490683	3.8243542840754	3.7320411270213	3.74385160394332	0.682842089139307	0.208782006061131	0.599873382608238
Merged-chr11-63093607-4	chr11	63093130	63094130	+	955.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	31971.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	5.56997437570996	5.31551836972254	5.68072491088066	6.19632336625627	6.30153777780719	5.92327504710077	1.13827360604059	0.000402696319523831	0.00883172255006298
Merged-chr7-17023092-2	chr7	17022592	17023592	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	4822.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	5.34189170586694	4.84381374560204	5.36240044835791	5.5924421641619	5.40522911266517	5.3650622558566	0.517833459692039	0.169240302717946	0.545946619700505
Merged-chr10-79767054-4	chr10	79766545	79767545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-93.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	5.614464957109	5.26852167993935	5.68940995395728	5.49430352688752	5.01232268832432	5.51517766762951	-0.348816275191899	0.356431795941556	0.74326734997459
Merged-chr13-51842581-2	chr13	51842081	51843081	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4094.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.48585494458316	4.42946579156411	4.65034877345595	4.20436242952812	4.15957500831435	4.39837147251174	-0.70562979501556	0.115848940463502	0.454417509927265
Merged-chr10-26375969-4	chr10	26375462	26376462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	-743.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	4.78859886064007	4.67400782876545	4.90158578141683	5.14629635117412	4.92867505572202	5.40482862982829	0.81801783359694	0.0390215693430483	0.245012582394836
Merged-chr8-22139877-3	chr8	22139393	22140393	+	758.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011848, intron 11 of 15)	intron (NM_011848, intron 11 of 15)	-14826.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	5.61993388559085	6.09176094521192	5.52332540690453	3.87851272439622	3.69573067070582	4.0974948635921	-5.61219246517483	3.21691125152865e-16	1.12467542612267e-13
Merged-chr7-139225471-2	chr7	139224970	139225970	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-12163.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	4.82420642075147	4.98210242088461	4.67365710500447	5.34880926598761	5.41063923018735	4.78690824396864	0.808917254192232	0.0515502396695789	0.289549908358737
Merged-chr1-182381432-2	chr1	182380932	182381932	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27735.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	4.64185173173001	4.4296002998053	4.39489361289921	4.41387806770659	4.35230430193116	4.279207235634	-0.373616405292711	0.397709525581957	0.774593722474986
Merged-chr6-92209921-3	chr6	92209425	92210425	+	719.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030081, intron 2 of 11)	intron (NM_030081, intron 2 of 11)	4886.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	4.17058443687231	4.13119759190988	4.26992287159384	4.03124181713277	4.20524161790223	4.20394680922279	-0.10467611762848	0.823601770085925	0.958451715155168
Merged-chr2-129369247-4	chr2	129368747	129369747	+	784.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015474)	promoter-TSS (NR_015474)	-655.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	5.26499166518795	5.11281421179145	5.53703041424316	5.24713547056063	5.34433482567674	5.49066664177347	0.109621884059647	0.759602910649377	0.940523183674791
Merged-chr7-45920088-2	chr7	45919588	45920588	+	890.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146346, intron 2 of 4)	intron (NM_001146346, intron 2 of 4)	761.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	4.58024184802477	4.29737955729341	5.11062639625284	4.55449842615244	4.31842620080147	5.08515093325477	-0.0319895588204332	0.950652950088078	0.988462504713506
Merged-chr2-75613303-4	chr2	75612803	75613803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45956.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	5.08016779381382	5.1599600018386	4.99673164005697	5.65353934450246	5.8965071467292	5.28276685955479	1.10166066004551	0.00286523505133628	0.0406219932103577
Merged-chr2-29661915-4	chr2	29661430	29662430	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	42210.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.73232631020455	5.50379181959534	5.46803884757305	5.50724583327194	5.54801054832439	5.69785948488124	0.00435736337664941	0.989410832530682	0.997597007948949
Merged-chr9-124068297-3	chr9	124067798	124068798	+	936.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33885.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	5.94758519965362	6.20690679803991	6.47092423866425	6.32153804780599	6.00763619891882	6.37243683751467	0.031802212560957	0.919426990898139	0.982034101943453
Merged-chr2-128724250-1	chr2	128723750	128724750	+	608.0	f0_balb.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	25335.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.81762444436803	4.80201715907091	4.64718332759818	4.94497339908348	5.01210569225169	5.08824663292865	0.550779346699851	0.151862248207951	0.519634796559235
Merged-chr12-3821403-2	chr12	3820903	3821903	+	673.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	14243.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.29406171064366	4.31133285164889	3.91403057348752	4.61671842865838	4.78824602686237	4.29570252117521	1.04536941584634	0.0372466008194711	0.238163003226508
Merged-chr3-19627252-4	chr3	19626758	19627758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17202.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	5.31766734144397	5.40082333676963	5.10175400122789	5.15314484865732	5.25820722230002	5.71763367151778	0.199638059280007	0.597723361385923	0.880455475375358
Merged-chr5-123344411-4	chr5	123343928	123344928	+	849.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029850)	promoter-TSS (NM_029850)	-20.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	3.81190247405653	3.69227892940902	3.45828999574462	3.51411889701258	3.15291475513191	3.53077639821092	-0.962459765150693	0.121556230910339	0.46638882246556
Merged-chr4-107923625-4	chr4	107923101	107924101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009949)	promoter-TSS (NM_009949)	-12.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	7.80614724975641	7.92032724213484	7.5545256035314	7.81352188567653	8.1852362872775	7.56003510075166	0.16386303917839	0.539031368714273	0.85572026801956
Merged-chr16-97560596-2	chr16	97560096	97561096	+	552.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003508, exon 14 of 14)	non-coding (NR_003508, exon 14 of 14)	24513.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	2.87127085676372	2.8866482685432	3.03721998186899	2.73581722609907	2.67784510932136	3.32106659216536	0.0444909618301748	0.953783629512631	0.989446911725587
Merged-chr2-28590796-2	chr2	28590296	28591296	+	701.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7517.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	4.05586687290349	3.33460020927095	3.607761452503	3.58967048842888	3.55661206934165	3.32705972586212	-0.711826404233762	0.271051749495045	0.668316412480627
Merged-chr6-134321697-3	chr6	134321317	134322317	+	810.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153848, intron 3 of 8)	MTEa|LTR|ERVL-MaLR	-74512.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.06735379062925	2.90756813065439	2.99260408780531	2.70950398219144	2.74444004717091	2.82565873483845	-1.20555648272243	0.093646533940591	0.407602698965774
Merged-chr11-101583190-6	chr11	101582591	101583591	+	976.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 1 of 7)	MT2B|LTR|ERVL	792.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	6.28581524018954	6.53762533169124	6.3701989820999	6.49566661329731	6.77404685731393	6.48647504472667	0.316059834653652	0.256084262653133	0.653115451305932
Merged-chr6-29848962-4	chr6	29848421	29849421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	RSINE1|SINE|B4	-4820.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.5653944793054	5.55799993380788	5.39683154337844	5.44307359023711	4.90823697077317	5.09520988531119	-0.688948890524088	0.0635728869900265	0.328618548839295
Merged-chr2-181601263-4	chr2	181600767	181601767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-52.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	8.16942276956416	8.23071731680276	8.01761445304535	7.96978899242712	8.1252419397729	8.0067588679797	-0.15302057808194	0.473919362232215	0.821179948202206
Merged-chr9-70841193-4	chr9	70840686	70841686	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	93622.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.62338770851674	6.37648600932561	6.35913314301331	6.66581914515234	6.61348663083795	6.71606758056186	0.317602971386535	0.23412085544724	0.63036877369004
Merged-chr16-10962244-4	chr16	10961740	10962740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30881.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.07208683787606	4.98019772810827	4.78503804663539	5.14341177625201	5.13015203481604	4.72607988408219	0.142720530829977	0.719933607677257	0.927969809283981
Merged-chr6-113642364-2	chr6	113641864	113642864	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	B1_Mus1|SINE|Alu	3897.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.03843354785534	4.90291130210849	5.36878359530126	5.13783878650236	4.94879300861222	5.31648653557127	0.0563760284809068	0.884917807475782	0.973538624783452
Merged-chr1-131366070-4	chr1	131365565	131366565	+	870.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 4 of 22)	ORR1E|LTR|ERVL-MaLR	-86502.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.2844787762232	4.42241723529661	4.32898864410471	4.1285208170688	4.40065046788265	4.35242192277306	-0.121500635588538	0.789738879306803	0.949306100353451
Merged-chr13-119818894-2	chr13	119818394	119819394	+	873.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11323.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	3.12704553225492	3.1015897451791	3.14709309403304	3.04985294583043	2.92865871950822	3.43329282095253	0.0959147475621331	0.887674348380604	0.973836995667151
Merged-chr12-3859965-2	chr12	3859465	3860465	+	695.666687	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045884, exon 4 of 4)	non-coding (NR_045884, exon 4 of 4)	2279.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.46494401405914	4.18567751789403	4.43640799687657	4.42005846096388	4.21341844692518	4.03626612644541	-0.339474323809723	0.476089538626542	0.822337374256063
Merged-chr11-20213920-2	chr11	20213420	20214420	+	847.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	MLTR14|LTR|ERV1	12508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.1630952797223	4.1734389675779	4.89791654204464	4.08202725167372	4.13160824493314	4.43821387802027	-0.593393894591193	0.260061518697941	0.657626465516434
Merged-chr10-115383791-4	chr10	115383258	115384258	+	866.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025780, intron 1 of 2)	intron (NM_025780, intron 1 of 2)	677.0	NM_025780	66816.0	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	6.46107716110522	6.82947992696527	6.29083416931718	6.13478119238958	6.31229999868224	5.79621166833568	-0.728540706910019	0.024954012029947	0.186874424221059
Merged-chr12-85129811-3	chr12	85129305	85130305	+	583.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030225, exon 12 of 15)	exon (NM_030225, exon 12 of 15)	18972.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	2.71056104432221	2.78083031305531	2.80054443723496	2.76210006238414	2.6717669184478	2.55386480089828	-0.513172136442916	0.494223646469512	1
Merged-chr2-84622975-4	chr2	84622507	84623507	+	980.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	26473.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.00170079136463	6.61329667812192	7.01358338080025	6.85272388647675	6.94744348054405	6.77379088435813	-0.0304893491967054	0.909316653247864	0.979433534093496
Merged-chr1-173694487-4	chr1	173694036	173695036	+	910.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162938, intron 5 of 6)	ERVB2_1-I_MM-int|LTR|ERVK	20856.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	3.24960250793268	3.70539088505488	3.3353063818295	3.6528536998753	3.64982394817025	3.5253420900035	0.56658675297147	0.358008266561226	0.744545257134442
Merged-chr7-121981023-4	chr7	121980530	121981530	+	838.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033318, intron 1 of 16)	intron (NM_001033318, intron 1 of 16)	663.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	4.94232881464886	4.99725840526238	4.73261315289337	4.82482761034203	4.53633916311022	4.49840557726015	-0.627586290933258	0.129527847234279	0.481429093343005
Merged-chr4-126609817-4	chr4	126609331	126610331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145950)	promoter-TSS (NM_001145950)	-23.0	NM_001013755	230757.0	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	5.88767053327296	5.91021641715674	6.00091833333552	5.89596375794043	5.51354417065843	5.82792892389222	-0.328089120458548	0.299804901089111	0.696508996253706
Merged-chr4-6454769-2	chr4	6454269	6455269	+	895.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010945)	promoter-TSS (NM_010945)	-498.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	4.51448430882941	4.61647496435447	4.49441661668438	4.66804478318139	4.57240905949321	4.561678326175	0.135507507015049	0.744209465723546	0.935908101256887
Merged-chr5-120509024-4	chr5	120508519	120509519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2173.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	3.69359194659464	3.5013745354738	3.71546030599502	3.81482983331725	3.8103050857385	3.38850519198744	0.190555150066236	0.745038107035143	0.936032341688524
Merged-chr9-79785181-4	chr9	79784685	79785685	+	778.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133718, intron 1 of 6)	L2|LINE|L2	8245.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	3.45081486685957	3.85060676383269	3.58618372387863	3.5437271456038	3.80347841041728	3.48798323232727	-0.059048971546628	0.920830763840919	0.982463724790289
Merged-chr10-34233704-2	chr10	34233204	34234204	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR24|LTR|ERV1	-26153.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.39375238729185	4.12645346060199	4.19989216816024	4.5452584502296	4.50215686848126	4.22074457820618	0.504454893551311	0.277072905691638	0.674343034039447
Merged-chr10-70040474-4	chr10	70039967	70040967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56654.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	4.86397915886074	4.61827523836089	4.65542917925932	5.0844468702735	5.34020416051816	5.29564283282977	1.13323829647422	0.00338245802210569	0.0459806513810439
Merged-chr10-87839628-4	chr10	87839125	87840125	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18640.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.93787182204701	4.51663112889315	4.67880345704094	4.67405703744148	4.66685030394719	4.53639754560207	-0.221610331364446	0.602045992958615	0.882203490104614
Merged-chr5-121721985-4	chr5	121721472	121722472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	Tigger15a|DNA|TcMar-Tigger	10363.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	7.79213696077242	7.7681664405796	7.70861570758662	8.00392982587886	8.27604791611594	7.68173040580281	0.373791275800751	0.132111449171551	0.486188104304079
Merged-chr2-44926437-1	chr2	44925937	44926937	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-64815.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	8.33707258697125	8.65943484411486	8.33601597775746	8.33295130753919	8.70622212920903	8.30512867961206	0.0149264447972785	0.950354360306549	0.988425934178221
Merged-chr17-35174656-4	chr17	35174153	35175153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	MER21C|LTR|ERVL	1399.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	6.33031655716077	5.99888755413414	6.42902028781387	6.42961322159001	6.86576180399254	6.93247980183055	0.807473877653053	0.00782854853070236	0.0847843116156036
Merged-chr7-4067295-4	chr7	4066792	4067792	+	968.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4088.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	4.34460914239058	4.17817969932661	4.36924250570632	4.32008012577598	4.24329717828767	4.4359551305747	0.0877181959468149	0.846075151082738	0.963952023053746
Merged-chr6-87843658-2	chr6	87843158	87844158	+	623.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4899.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	3.72470444106699	3.89527916062145	3.72625664312198	3.77435771155395	3.40389614695239	3.89595419005383	-0.289201094156186	0.613658970904904	0.887300906025089
Merged-chr3-19011647-4	chr3	19011146	19012146	+	905.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	151449.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	2.50111990726198	2.70689207047134	2.79534213741763	2.83208049937003	2.97599926512669	3.3159097783795	1.95371282775663	0.0137000740386999	0.125011126435039
Merged-chr11-73084523-3	chr11	73084020	73085020	+	957.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025818)	TTS (NM_025818)	-6063.0	NM_001361245	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	4.19331246789301	3.92067333614596	3.97070240496944	3.45457585971668	3.66342809358909	3.62505363080733	-1.47331031652736	0.00818086488542099	0.0874278712286296
Merged-chr10-24493875-4	chr10	24493366	24494366	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101576.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.74314544731695	3.75404816808162	3.67030687173108	4.00717975104762	4.17485483051759	3.95448033558289	1.02615100329501	0.0469266351896028	0.274300769993429
Merged-chr5-65955046-2	chr5	65954546	65955546	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12078.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	3.39305291064232	3.38110864400102	3.2549412273133	3.21204811629117	3.40954239133338	3.38405712547886	-0.0339240179154312	0.955606587710433	0.989763164889919
Merged-chr7-64360787-2	chr7	64360287	64361287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13308.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.57896219365491	6.54382985951926	6.87190472504416	6.5173121905191	6.75769081751523	6.72718519846312	0.0138559056479453	0.959211141058687	0.990174309444982
Merged-chr11-86750838-2	chr11	86750338	86751338	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	B1_Mus1|SINE|Alu	6729.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	7.12109088791545	7.02764363386545	7.02217557607723	7.10729172706345	7.51817963906297	7.48183972174391	0.484889550709966	0.0543255391757166	0.29933483422739
Merged-chr19-8820548-2	chr19	8820048	8821048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001081196, exon 1 of 14)	exon (NM_001081196, exon 1 of 14)	1147.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	7.79005389707073	7.87298871016971	8.01637608671779	7.78034845221563	7.81336352140088	8.12029554111619	0.0220963927375825	0.923800253744379	0.98277276115275
Merged-chr17-17870411-1	chr17	17869911	17870911	+	665.333313	f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	13528.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	6.22274368760762	6.30572626049026	6.64690635617472	6.492313645409	6.83965634344464	6.921474633681	0.58811494625927	0.0442639054669049	0.264823254969037
Merged-chr13-43780114-2	chr13	43779614	43780614	+	669.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-4998.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.40821664038818	3.78683465273919	4.15039194167262	3.95712452863308	3.96422256580314	4.0790328638446	-0.414397276748739	0.433234553216561	0.797764416846518
Merged-chr6-134220447-4	chr6	134219976	134220976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-175853.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.66259512597125	7.2379730908243	6.98772843748728	7.36874760700047	7.55236138726459	7.29367710877775	0.113522703755721	0.684143149656293	0.915773756389094
Merged-chr8-86873284-4	chr8	86872778	86873778	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11980.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.97275468818785	6.03449947621637	6.44006491239193	5.96745016450951	6.27750618661699	6.2025911262215	0.00759578639754444	0.980595026879056	0.995526488488927
Merged-chr18-30503946-3	chr18	30503474	30504474	+	880.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	231109.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.54427703955038	4.43514339280415	4.43890199944251	4.95313809336192	5.18762075991918	4.64332925537865	1.12614635233153	0.00823585061962488	0.087859422099777
Merged-chr5-146772168-4	chr5	146771676	146772676	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	22780.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.35149895404242	5.40870378922007	5.17121044208458	5.72007756497304	5.79551102149066	5.66936804092434	0.773723805948184	0.018876235320865	0.155448712250449
Merged-chr2-3512181-4	chr2	3511680	3512680	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	634.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	7.54068534030753	7.91400289145103	7.47841387362914	7.55929268444136	7.83462637762344	7.14229198676939	-0.159353893312068	0.577397103435348	0.872117086580778
Merged-chr9-111046393-4	chr9	111045892	111046892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	10852.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	5.47362450646496	5.18278618714368	5.6831742664488	5.65547646387143	5.52225263837641	5.58739864630071	0.260773258075232	0.451808827855623	0.809245753174589
Merged-chr4-48044355-4	chr4	48043844	48044844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-961.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	8.52757673136296	9.04311082468859	8.57080811150829	8.64854251571363	8.93741335008209	8.26479404390128	-0.119500053472182	0.662368662686447	0.906777186880082
Merged-chr7-126429062-4	chr7	126428544	126429544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030566, exon 1 of 13)	5' UTR (NM_030566, exon 1 of 13)	277.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	6.61761508840328	6.64131643820886	6.84685580610036	6.56888704244038	6.46497724672276	6.45545773267715	-0.320541320947407	0.22174218145102	0.616585509091023
Merged-chr8-64850011-4	chr8	64849512	64850512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-88.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	5.10887202012879	5.07845298870185	4.6310700908534	5.1223800805791	4.67405883045558	4.97984513718307	-0.0751466170140566	0.858728517868156	0.966967311483659
Merged-chr13-44957263-2	chr13	44956763	44957763	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 6 of 9)	intron (NM_025772, intron 6 of 9)	44833.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.35430127348743	4.22814393928044	4.15707165658536	4.05068880259421	3.97210303910117	4.44093458261879	-0.259897419689002	0.596968446291721	0.88011264230803
Merged-chr16-4937771-2	chr16	4937271	4938271	+	856.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001357061, exon 16 of 16)	3' UTR (NM_001357061, exon 16 of 16)	-1340.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	3.90281836464562	3.97894153309884	4.16554176835738	3.51003611129472	3.64807394223076	4.14761141253253	-0.704379397261809	0.218533947769578	0.61273880821229
Merged-chr17-26931941-4	chr17	26931425	26932425	+	873.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053173, intron 10 of 10)	intron (NM_053173, intron 10 of 10)	-1202.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	3.01037712280604	2.9596832900805	3.02142224942641	2.97520397795798	2.92498640985613	2.97453835497134	-0.185811869376488	0.781241048390394	0.946170805022375
Merged-chr10-37348914-2	chr10	37348414	37349414	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-209988.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.50269845708997	3.38995508011572	3.16805979735192	3.48283925009735	3.40182069793147	3.36349353964857	0.190317761475057	0.757145389190319	0.939819795914786
Merged-chr5-105595367-3	chr5	105594877	105595877	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75906.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.30960943634541	7.31820839150886	6.78064961089862	7.16887046617462	7.46369468406092	6.96429012163612	0.0821850710598599	0.776269598850035	0.94480820353868
Merged-chr7-113518329-1	chr7	113517829	113518829	+	659.0	f0_balb.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	4495.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	5.51917571634913	5.5412214327741	5.65479712324358	5.53757479322329	5.37518066068523	5.74171148451261	-0.0395285363241876	0.905326350536019	0.978279198518346
Merged-chr19-9938320-3	chr19	9937834	9938834	+	939.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38801.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	7.81207738029759	7.51280902601491	7.52414621611603	7.4889139548352	7.56215619050325	7.14511553723355	-0.30136910210735	0.234364935354263	0.630452522567377
Merged-chr1-171915881-5	chr1	171915436	171916436	+	910.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151536, intron 1 of 2)	RMER15-int|LTR|ERVL	-1526.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	4.20311471927647	4.28114085149778	4.1486899293166	4.52654801355827	4.12271546326305	4.26534340824915	0.263562129387254	0.577483675751194	0.872148719828391
Merged-chr3-20005812-4	chr3	20005297	20006297	+	957.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276250, intron 19 of 19)	intron (NM_001276250, intron 19 of 19)	29513.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	5.72078313940838	6.15316884723537	6.26770450800255	6.18565981859963	6.51666080545524	6.12109713300311	0.394197656445902	0.224721200809747	0.619609949365475
Merged-chr9-60181053-4	chr9	60180545	60181545	+	893.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-39825.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	4.10932161110873	4.18341808439675	3.85306213470493	3.89332516609892	3.71128090087856	3.70487437173696	-0.902501624180576	0.0865323110337592	0.389672092588409
Merged-chr11-79306558-2	chr11	79306058	79307058	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-33334.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	6.56823181672378	6.78844214894638	6.71929948048904	6.74736740828101	6.69283802990285	6.54390753439879	-0.0407472147118317	0.875580757185636	0.971054644903929
Merged-chr14-27186160-5	chr14	27185715	27186715	+	870.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	42222.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.20515409849054	7.39475438569942	7.66659985975837	7.20354538692883	7.08616501044224	7.07401035199302	-0.456029209114108	0.0714434161738113	0.350618370922116
Merged-chr11-16980781-1	chr11	16980281	16981281	+	604.0	f0_balb.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27937.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	3.46628887249222	3.6793998688449	3.80165584229724	3.42371740428594	3.73720020627635	4.0936929087539	0.399223508588075	0.506185418256402	0.838347465097765
Merged-chr17-65749986-2	chr17	65749477	65750477	+	828.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	22775.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	3.68711072744277	3.62860016330789	3.83864902034021	4.96269963077105	5.22808887551274	4.61826272789323	3.64942977337905	2.81621040937673e-11	4.1994845115308e-09
Merged-chr7-99093178-2	chr7	99092678	99093678	+	786.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 4 of 14)	ORR1E|LTR|ERVL-MaLR	47966.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.32820047336384	3.55868072870247	3.54033928918576	3.32413714541485	3.74736811292355	3.44627252495562	0.175494733425292	0.774082772711659	0.944274081186197
Merged-chr2-91412510-4	chr2	91411989	91412989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 2 of 8)	intron (NM_175123, intron 2 of 8)	32225.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	5.74765678252116	5.76375406857475	5.66335888599345	5.71589832638168	5.71413507802101	5.49485212335	-0.137531409913373	0.662740515000856	0.906804932599005
Merged-chr3-28039975-2	chr3	28039475	28040475	+	644.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 7 of 25)	intron (NM_008875, intron 7 of 25)	55804.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.01522490729391	3.18726947639841	3.18378926993444	3.1185193241495	2.99549450477105	3.14089659880218	-0.2088449076289	0.748797992168731	0.937087780077821
Merged-chr7-127478434-3	chr7	127477923	127478923	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-6798.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	8.3113118031788	8.24539046456949	8.03295952235929	8.24447591663836	8.47619578418353	8.05878825560376	0.101691516389942	0.661974453577324	0.9065134513884
Merged-chr9-119246695-2	chr9	119246201	119247201	+	688.25	f0_balb.idr|f0_c57.idr	intron (NM_001359582, intron 14 of 18)	intron (NM_001359582, intron 14 of 18)	-15009.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	4.95868407466061	4.74905647167729	5.04420396352433	4.55336808461536	4.46781570030888	4.75977249689939	-0.76371790239024	0.0636190814712695	0.328754192136956
Merged-chr10-34234206-3	chr10	34233689	34234689	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-26638.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	5.03784677878357	4.61348218955184	4.62572605453337	5.15628346397958	4.85419260806618	4.81816471577932	0.379779878769736	0.367500187268621	0.752455260811988
Merged-chr13-75820130-4	chr13	75819630	75820630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19755.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.55220549174224	3.22097868476596	3.24715838800224	3.23336034669398	3.0236374080723	3.2614826516707	-0.745569134470015	0.251910215075108	0.649428218365646
Merged-chr15-89089570-2	chr15	89089070	89090070	+	952.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_027905, exon 1 of 9)	exon (NM_027905, exon 1 of 9)	532.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	4.73724745725792	4.37463020174456	4.52406591130555	4.75505678953857	4.28868988596566	4.63207488485814	0.0283908383362441	0.950327963574502	0.988425934178221
Merged-chr17-74489497-4	chr17	74489014	74490014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026417)	promoter-TSS (NM_026417)	21.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	7.38952941079016	7.37713963246279	7.06421106192128	7.43854987143681	7.07696217256741	6.74226324754026	-0.247578281696254	0.38956022650892	0.769244170164916
Merged-chr11-97984445-2	chr11	97983945	97984945	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	2001.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	1.80739060330285	1.81427254752964	2.00371302930379	1.62816184132951	1.8087048765624	1.74288312163312	-1.31837994670571	0.220099478682073	1
Merged-chr1-80615621-4	chr1	80615118	80616118	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	49734.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.83721392503982	5.92257879392639	6.11626590127239	6.15666479584022	6.05720671687165	5.90392957135334	0.161844409904234	0.589170034105608	0.876753289776615
Merged-chr16-4912292-2	chr16	4911792	4912792	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	26192.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	5.5173163829504	5.8122757531298	6.16828701867854	5.89229845129578	5.94149280316456	6.28449568051997	0.341351215664507	0.32193878196179	0.715361348756705
Merged-chr16-91811488-2	chr16	91810988	91811988	+	833.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 8 of 15)	intron (NM_001110276, intron 8 of 15)	82117.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	3.16298301637414	3.22449175232958	3.59212730602815	2.91399630146777	2.89256391702735	3.56597595329365	-0.701127973579316	0.347782362678758	0.735747481116546
Merged-chr3-54248552-5	chr3	54247988	54248988	+	900.742859	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	92431.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	4.23881066685916	4.29129948194802	4.32172938873956	4.33399506449069	3.9782645236509	4.30167647226659	-0.210314412841303	0.656722934250354	0.904693205515276
Merged-chr5-38598832-3	chr5	38598319	38599319	+	840.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-37224.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	2.70904190060377	2.59162459309574	2.84073442188305	3.44874672742158	3.35917528735367	3.55591407823041	4.45265991689135	6.573656991298e-06	0.000279356920802821
Merged-chr4-87893156-4	chr4	87892654	87893654	+	590.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-86831.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.47288725134339	4.51302022737185	4.53110254034542	5.13621145396117	5.30398780224683	4.68895096550028	1.31202340593954	0.00188247105953558	0.0294817714891467
Merged-chr16-22264282-2	chr16	22263782	22264782	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1723.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	6.15116736205322	6.44214239193162	5.64483773587435	6.31844979620609	6.35294362806519	6.19714610208007	0.262143091241906	0.436030642121049	0.799445556036584
Merged-chr13-21721428-3	chr13	21720910	21721910	+	667.399963	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-634.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	6.274772959605	6.1763415701715	6.21893013800674	6.39710313916029	6.51916267900276	6.35943582424242	0.344073627115224	0.204942144956781	0.595607069175504
Merged-chr2-27030383-2	chr2	27029883	27030883	+	579.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2385.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	2.90917974914116	2.76591708690869	2.85612172439169	3.06046832823955	2.74784304364348	3.21863091882419	0.819251336920247	0.259650021903476	0.657223042078191
Merged-chr16-23415103-2	chr16	23414603	23415603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14030.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	2.5918157814293	2.62615837349567	2.5669394016159	2.94769332783491	2.81489279365826	2.89719824133226	1.57525987656321	0.0371765596847594	0.237941361651563
Merged-chr17-32193186-4	chr17	32192688	32193688	+	925.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-3718.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	3.62659285654425	3.50897043498877	3.5108151580243	3.95037942997513	3.87939779832035	4.04531182695919	1.33988564274493	0.013607210394614	0.124379738824019
Merged-chr7-44825053-4	chr7	44824562	44825562	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-8404.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	3.80790956715682	4.17189274533035	4.34965350203479	4.01509765386049	3.66222330904291	3.92853614959557	-0.748243034314221	0.16863567278276	0.5452857055496
Merged-chr2-84623982-4	chr2	84623480	84624480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25500.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.36385880696599	7.0835552010305	7.04085950017298	7.07110278099922	7.25911649172146	7.09878261320983	-0.0390632095557003	0.875976321187559	0.971162730906517
Merged-chr10-80261072-4	chr10	80260558	80261558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-46.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	6.7233225514726	6.53868164699792	7.18432364227835	6.71418637275787	7.04435768397151	7.0899310855232	0.191817442635335	0.520703638129508	0.846662720861138
Merged-chr14-61971284-4	chr14	61970770	61971770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-288897.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.33948383518966	7.17164426332582	7.03679579808122	7.08330361543801	7.17802667327727	7.0407180289458	-0.133593493945332	0.58362608301302	0.874162675559328
Merged-chr16-64854302-2	chr16	64853802	64854802	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357416, intron 2 of 2)	intron (NM_001357416, intron 2 of 2)	2301.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	3.01002300949864	2.95958700031561	2.76950309242737	3.09579206594156	2.99546032496923	3.03435655992694	0.554243378222588	0.425492843736981	0.793128932002089
Merged-chr10-61678723-2	chr10	61678223	61679223	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_126477, intron 1 of 1)	RLTR18B|LTR|ERVK	-1562.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	2.65712540280696	2.7668721906109	2.81438165682795	2.81730960123836	2.68433190720436	2.6368777575671	-0.15682538734772	0.831787614517755	1
Merged-chr12-54696519-4	chr12	54696049	54697049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331162)	promoter-TSS (NM_001331162)	-655.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	8.4523388073842	9.03934185946144	8.55974757812261	8.8893749220459	9.38765628180326	8.62012707157038	0.408423125385472	0.15641469435928	0.526963879190499
Merged-chr5-99203637-4	chr5	99203123	99204123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49304.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.75343216990362	6.05276409422262	5.74607996384514	5.6828802795571	5.72100821186508	5.83344400188217	-0.221247349128683	0.48292093304631	0.825873702536581
Merged-chr7-74645776-4	chr7	74645261	74646261	+	974.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90981.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.61487288422284	2.5072741156917	2.73856208218044	2.55978820005309	2.5254890802805	2.86932264594723	0.191515581969024	0.805861812755352	0.954032150754035
Merged-chr5-137628914-4	chr5	137628421	137629421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168652)	promoter-TSS (NM_001168652)	-202.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	7.65128652174399	7.41780932479067	7.40467541590206	7.60376085478629	8.01230652846658	7.56591568427173	0.36714532659847	0.147660648001186	0.512708529414233
Merged-chr17-5802259-4	chr17	5801761	5802761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045079, intron 2 of 2)	intron (NR_045079, intron 2 of 2)	2771.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.50179064546812	4.4745643644665	4.04231843973441	4.32681317742228	4.29877098149185	4.31159324468173	-0.146891316453112	0.755974940659374	0.939498205669344
Merged-chr11-17183407-3	chr11	17182900	17183900	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 2 of 5)	ORR1C1|LTR|ERVL-MaLR	24102.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	4.33525632847328	4.34777983348696	4.24932985039494	4.00798110410112	3.64947298653167	4.22847212665398	-0.983141934791319	0.058735485904023	0.313627819489312
Merged-chr10-44271873-4	chr10	44271372	44272372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358596, intron 1 of 6)	L2|LINE|L2	3533.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	6.13443435846419	6.03725590295122	6.01683763707596	5.74031644463447	5.96124968887771	5.91423082044972	-0.328205539622091	0.268316039073048	0.665391603019622
Merged-chr7-105642635-6	chr7	105642181	105643181	+	810.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360053)	TTS (NM_001360053)	2236.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	3.6625850915797	3.59605889091225	3.9272122139779	3.46069090400303	3.64727874706415	3.80814581989882	-0.291787241723489	0.606706188169659	0.884254358240743
Merged-chr19-3685301-2	chr19	3684801	3685801	+	888.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	1263.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	6.0256567404404	6.14623998622152	6.16327760898267	6.14890079521514	6.2363140074117	5.90145554115274	0.00696330897566176	0.981102310846577	0.995687678606673
Merged-chr5-76929344-4	chr5	76928848	76929848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172146, intron 1 of 10)	intron (NM_172146, intron 1 of 10)	-21954.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	2.71980358749645	2.68347054944007	3.14650297628314	2.97251450556814	2.76534443128508	3.21755338648834	0.619753923776662	0.414823404550779	0.786052044028208
Merged-chr2-60089340-4	chr2	60088838	60089838	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	36402.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	5.11992417882757	4.79995118302347	4.86631593386745	4.94892123376659	4.72176943169616	4.65118356824388	-0.350059757463013	0.386547637972294	0.767131316757601
Merged-chr9-5303152-2	chr9	5302652	5303652	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009807, exon 5 of 10)	exon (NM_009807, exon 5 of 10)	4635.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	3.95390607390561	4.25908295897618	4.17069112263091	4.29044475007701	4.11749551930893	4.53234532983409	0.491912838787882	0.313679065327392	0.708132564679568
Merged-chr13-34793266-4	chr13	34792752	34793752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53610.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	7.17796230946771	7.48161599585507	6.99643429038675	6.95828914660091	7.18911596280103	6.60504168090904	-0.436002885840702	0.134569498242387	0.490430403023745
Merged-chr12-79191893-4	chr12	79191391	79192391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-36.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	4.14973608009354	4.43432649100431	4.46974651634541	4.27022177699339	4.35090005139235	4.03062837936505	-0.323713710257393	0.498905528885408	0.83416518313324
Merged-chr17-65733164-2	chr17	65732664	65733664	+	609.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	39588.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	4.3234115834217	4.24177243960118	4.75230802690782	4.57538354905987	4.5294529589237	4.85134039146272	0.507584193268275	0.266784715316457	0.664211800725645
Merged-chr2-118554543-4	chr2	118553978	118554978	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4792.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.07734307644367	4.00316273258567	4.16763998134219	5.93395350188612	6.0278566631273	5.47274883630896	4.2348875506806	1.91122264024774e-18	9.87757847513876e-16
Merged-chr19-32907433-3	chr19	32906933	32907933	+	743.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	149856.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.24095272328279	5.2031739600636	5.45040865883433	5.55346102207062	5.50277550429309	5.2996193605567	0.333227465530045	0.33249545153473	0.723636403333698
Merged-chr8-120621429-2	chr8	120620929	120621929	+	800.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	12953.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	4.60503362380495	4.96163473113763	4.84476634203963	4.14072957558884	4.17523033978483	4.44487351391043	-1.41410777502392	0.00165394302241384	0.0266894850997616
Merged-chr14-101662097-4	chr14	101661599	101662599	+	868.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016723, intron 2 of 8)	CT-rich|Low_complexity|Low_complexity	8132.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	3.68692022426929	3.78074208710823	3.66013736333925	3.6134829389394	3.69114243932931	3.88135010293511	0.0484072062553022	0.928696408136464	0.983855604295977
Merged-chr4-119331524-4	chr4	119330987	119331987	+	750.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001270435, exon 12 of 15)	exon (NM_001270435, exon 12 of 15)	-10964.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	2.23781367320012	2.35182539703522	2.27171885783884	2.50325348150124	2.309768734372	2.71618755883026	1.47748845600416	0.0899097711594495	1
Merged-chr1-136579524-2	chr1	136579014	136580014	+	850.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-45387.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.35830613391412	4.43063036453905	4.19951400928087	4.80203772830644	4.64245986575428	4.46053818858078	0.76252181420822	0.0850116048622948	0.386129323574646
Merged-chr11-117242344-2	chr11	117241844	117242844	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-23902.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.30437853304181	4.19780792690183	3.94537259520986	4.04664242544332	3.98971804868349	3.7397748655413	-0.658346815350112	0.204035848841461	0.594262340917239
Merged-chr19-10803937-4	chr19	10803437	10804437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	26121.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	3.85322440117138	3.99927132452327	4.27632791503098	4.02602021422779	4.10452656205647	4.07796955747208	0.076760647193905	0.878011842909556	0.971816559882595
Merged-chr4-55386952-4	chr4	55386443	55387443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 9 of 9)	RMER10B|LTR|ERVL	31899.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	5.44517402763133	5.34304523156931	5.43470120990339	5.28551720944935	5.36935488779386	5.85299558023078	0.206455643282889	0.566905476214134	0.867657559224987
Merged-chr11-78534504-2	chr11	78534004	78535004	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159392, intron 1 of 6)	B3|SINE|B2	1756.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	3.90755470414679	4.02679036889303	4.22509739804461	3.83221245861399	4.24277093920763	4.37462637317711	0.323054964245055	0.531997469040669	0.851867550687707
Merged-chr7-46987470-2	chr7	46986970	46987970	+	716.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10838.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	5.8128703299226	5.59021066312756	5.81421703196635	6.08389444658767	6.30614925244669	5.71583596403604	0.586085823728517	0.0756137503660367	0.362068765636024
Merged-chr16-3723184-2	chr16	3722684	3723684	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5060.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	5.07093498567078	5.01145146640661	5.07684548492148	5.47685081239693	4.88320655316285	5.39336705384133	0.445085206037833	0.257978210615824	0.65544583050142
Merged-chr7-114887973-1	chr7	114887473	114888473	+	730.0	f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-60677.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.92956866247362	2.84947886975971	3.54212713188859	3.19866268526848	2.73347930919159	3.03115589480091	-0.600551060978263	0.437826360338728	0.800251642893088
Merged-chr4-59036836-7	chr4	59036357	59037357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1701.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	5.79499404078429	5.97074637306893	6.04060639401685	5.68453286975272	5.8536803047646	6.20263200910476	-0.0239232471082789	0.940829490531499	0.986888338850358
Merged-chr6-67037450-4	chr6	67036952	67037952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007836)	promoter-TSS (NM_007836)	-45.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	6.5441838870127	6.10026635396328	5.86531517633805	5.99514149180607	5.924953179479	6.20408540617996	-0.293432852886606	0.375766557386993	0.758939358878027
Merged-chr2-159646806-4	chr2	159646301	159647301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-300540.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.57322518953581	4.69936127218271	4.60771170212605	4.91586269041967	4.73802454458879	4.97580357097859	0.56025077715658	0.162885860315155	0.536280088042711
Merged-chr12-84004032-4	chr12	84003530	84004530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-5472.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	6.59971916258677	6.95364254451681	6.3521095945174	5.98564289769527	6.12834417844693	5.85786032774944	-1.09406854355258	0.000452898290342112	0.00972509959813844
Merged-chr7-44887134-4	chr7	44886639	44887639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	5285.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	3.91683934672233	4.04289461374031	4.70912502134255	4.22634448282334	4.1019921596502	3.9990330381363	-0.406447061127031	0.456131755992706	0.811360279461309
Merged-chr2-3664307-4	chr2	3663790	3664790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49168.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.70945142669535	4.92891515740942	5.11189717142397	4.70697447028303	4.70523483528079	4.75940734321155	-0.444570488542711	0.268793158366579	0.66596594566353
Merged-chr13-54611125-7	chr13	54610665	54611665	+	994.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347512, exon 1 of 6)	exon (NM_001347512, exon 1 of 6)	208.0	NM_028870	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	6.94071531030417	7.11676544331394	6.49405747966244	6.70221427283932	6.49034004233506	6.19744272160842	-0.628175969745161	0.0423131087589334	0.25780106565229
Merged-chr2-160616827-2	chr2	160616327	160617327	+	770.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-29070.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.05852911314654	4.15006791347904	4.32880767560613	3.97435560845826	4.21614655859127	4.08464526434228	-0.216204431953663	0.65601679845314	0.904520810952906
Merged-chr10-127667793-4	chr10	127667306	127668306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	683.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	7.86993944602337	7.65007433216478	7.67894915175518	7.95818628062526	7.95800328400151	7.72624176980843	0.217773050544384	0.335694132717331	0.725819493689421
Merged-chr11-94322037-4	chr11	94321547	94322547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-84.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	8.40413326194462	8.67892039935456	8.3097221177974	8.40855948801833	8.52716273089933	8.30287735462334	-0.0820833383395487	0.712947701838898	0.92531822516521
Merged-chr2-160249698-2	chr2	160249198	160250198	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77796.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.34090249460549	5.17459691497917	5.01480034727345	5.72601639955239	5.65727976284791	5.33176630330657	0.774700194099035	0.030601619691037	0.211558942778361
Merged-chr14-47294491-3	chr14	47293975	47294975	+	914.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3799.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	5.19158393881181	5.43625996129138	5.31455445583655	5.61610718236023	5.32510074048121	5.52700660856472	0.330246890023645	0.340518579693559	0.730173453949955
Merged-chr10-84366055-3	chr10	84365663	84366663	+	919.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74308.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.36314626349145	4.30793449485386	4.48002295273379	3.92462981928536	3.85086172361816	4.1658214752123	-1.15476926244145	0.0170887406380579	0.145461642430651
Merged-chr10-89733097-2	chr10	89732597	89733597	+	925.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-802.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	4.46173652166251	3.90035349287411	4.21542702678264	4.23995271235863	4.61443385975591	4.28449765122777	0.481277060153357	0.342671898227803	0.731516324791908
Merged-chr12-111758860-4	chr12	111758347	111759347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	-2.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	7.69999617630018	8.18551933878423	7.69061348286351	7.9202338601501	7.93324191026894	7.63357618797848	-0.0657236462619181	0.799512316882094	0.952248176414355
Merged-chr19-10845640-4	chr19	10845143	10846143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3099.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	6.21309871915541	5.98384356109703	6.05190718129466	6.61508710450226	6.6411212744108	6.28888272931884	0.735713660869933	0.0106371740301101	0.104975156885889
Merged-chr9-74935472-4	chr9	74934934	74935934	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17446.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.70376692820028	4.94631405200237	4.49158298556141	4.82116928309582	4.51074406979304	4.76876893670723	-0.086461700417836	0.841057394361478	0.962832831784718
Merged-chr14-32084954-4	chr14	32084453	32085453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145460)	promoter-TSS (NM_145460)	333.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	7.63075507864175	7.89267819698368	7.50241498456343	7.73870522949555	8.14469011366075	7.35871477402784	0.156440619521895	0.586612486585341	0.875615538765309
Merged-chr4-145194201-4	chr4	145193716	145194716	+	850.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 1 of 69)	intron (NM_001276465, intron 1 of 69)	789.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.60216671486326	6.02758641053118	5.77709831208041	5.96925647767593	6.02037934384484	5.46049721675415	0.0631378195124208	0.856883392190103	0.966628636076984
Merged-chr10-20534053-4	chr10	20533558	20534558	+	900.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	UCON26|Unknown|Unknown	14270.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.26133323111155	4.81708350795688	5.04029505991924	4.57937707344492	4.69390403014456	4.73912067252001	-0.856389526824378	0.0355321062514705	0.231414800952752
Merged-chr1-130428866-4	chr1	130428344	130429344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151525, intron 2 of 3)	intron (NR_151525, intron 2 of 3)	-5801.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	4.01407668832492	3.89349001913394	3.62936476794462	4.22481123739543	4.15758453445317	4.03211112941341	0.822108123019308	0.116719029434801	0.456196016779131
Merged-chr5-101239539-4	chr5	101239052	101240052	+	886.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	393323.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	5.13107458894542	5.58999272988479	5.01691193272278	5.57147072976553	5.61961857626532	5.33336138586219	0.456125928382079	0.230412873114231	0.626271502694957
Merged-chr8-109737735-4	chr8	109737190	109738190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080930)	promoter-TSS (NM_001080930)	49.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	7.01455587573083	7.09395806034462	7.25619201135155	7.37444277615626	7.00863783264158	6.94507038227111	0.00906651600561115	0.972335196340722	0.993868590220018
Merged-chr18-23845309-2	chr18	23844809	23845809	+	658.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	41339.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.8266769246828	5.64053256299669	5.63459442931014	5.90483766926346	6.26217107399212	5.48472086916198	0.416566116351236	0.242997836090463	0.640258516320938
Merged-chr7-132811103-4	chr7	132810595	132811595	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	2101.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.89450163413379	3.65753685330526	3.64607470724553	3.83500946319204	3.64505866731316	3.96975649715993	0.238886629621741	0.662418303179784	0.906792941744266
Merged-chr15-97865481-2	chr15	97864981	97865981	+	824.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 7 of 9)	intron (NM_009504, intron 7 of 9)	-20979.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	3.06238420652118	3.18234879906272	2.92480714108588	2.99842166557239	2.81555820482027	3.05919692372351	-0.50680262184442	0.464615382162443	0.816459397744841
Merged-chr11-32566701-1	chr11	32566201	32567201	+	1000.0	f1_balb.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	33435.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	3.20650652199974	3.01338811408618	3.25045230581114	3.08967410292305	3.1493456061343	3.03196455647675	-0.27353920158997	0.676519086521887	0.912525597578286
Merged-chr13-58488700-3	chr13	58488196	58489196	+	763.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85353.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	4.45337300109815	4.36510356175026	4.35929813595616	4.3924446640762	4.54828358503469	4.47058340947495	0.204290717153975	0.636791893299976	0.89723915288953
Merged-chr7-102020500-2	chr7	102020000	102021000	+	677.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-2345.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	6.10755797962084	5.82658354980165	6.08124477762795	5.85512603285192	5.82110701427532	5.84189462470235	-0.296597373409124	0.327072087012945	0.719317370353337
Merged-chr2-165945953-2	chr2	165945453	165946453	+	730.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-46684.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.05141518437909	5.59219397522822	6.02517671987379	6.11106888872943	5.93793754952256	5.62961903895091	0.0239978896875516	0.943658563035298	0.987453245208137
Merged-chr5-105005241-4	chr5	105004733	105005733	+	861.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22516.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.72244947209223	3.45517966441243	3.64286527879282	3.58573438030189	3.73960455740595	3.60634437860474	0.136870916774173	0.80754629984501	0.954557080558103
Merged-chr7-75704215-2	chr7	75703715	75704715	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-144123.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.86348935610676	5.80023357652531	6.13366680939495	5.86340120161043	5.88445723688003	5.8846794537401	-0.0915275555903021	0.764191590455411	0.941958626520407
Merged-chr7-120981641-4	chr7	120981134	120982134	+	785.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028955)	promoter-TSS (NM_028955)	678.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	4.16168217440236	3.8397776300399	3.99589256302577	3.73622717523646	3.59688112395564	3.71066854421142	-1.05618497156597	0.0483460982302171	0.278875711718537
Merged-chr10-127537098-2	chr10	127536598	127537598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2539.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.53932274674112	2.4376191245712	2.65441776094139	2.70258124934332	2.50940421245356	2.40528191222342	0.0205435731792075	0.979660655058426	1
Merged-chr13-75992876-3	chr13	75992376	75993376	+	999.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029343, intron 3 of 4)	intron (NM_029343, intron 3 of 4)	25137.0	NM_029343	75571.0	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	4.15032087607341	3.93064878415955	4.05065841064174	4.888516564635	5.04205520225028	5.13281303986305	2.47562305739199	6.26111773885503e-08	4.69770139598421e-06
Merged-chr18-38372171-4	chr18	38371673	38372673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33180.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	6.93841714333811	6.54025762009784	6.77823081536633	6.40175773066523	6.80866012123023	6.80702233426914	-0.11798930491529	0.680972372290696	0.914522966124234
Merged-chr3-28171458-4	chr3	28170956	28171956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-91758.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	3.06871230039242	3.15746740003434	3.20570028330112	3.05485653412267	3.15754694726337	3.16322889361683	-0.0715592501197025	0.91108010715445	0.980017061055921
Merged-chr5-64161037-4	chr5	64160597	64161597	+	917.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 1 of 19)	intron (NM_019636, intron 1 of 19)	837.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.81116101733747	3.80727352392424	3.71482234119374	3.87813756459824	3.91644118143443	3.61922652631846	0.12359226016069	0.817675660576649	0.956767881392089
Merged-chr5-136565627-2	chr5	136565127	136566127	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291233, exon 1 of 24)	exon (NM_001291233, exon 1 of 24)	354.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	3.4781062364459	3.52779733273228	3.58427925821878	3.79066488062826	3.47600848443274	3.85313669498792	0.634934291457152	0.266698810004846	0.664172509867066
Merged-chr14-16250817-4	chr14	16250339	16251339	+	881.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362432, intron 1 of 11)	intron (NM_001362432, intron 1 of 11)	-1031.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	3.59550471428027	3.81534117040262	3.64163454143756	3.69337061626008	3.56735456749873	3.42966654701798	-0.411493912634765	0.4690308564766	0.818883765302854
Merged-chr14-47568478-4	chr14	47567962	47568962	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-28.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	5.79043737304255	6.15604970262258	5.73371561008591	6.04995623557208	6.22369528227926	6.02346640668535	0.327228817329397	0.298633387059421	0.695418304893102
Merged-chr5-91977035-2	chr5	91976537	91977537	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10436.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	3.31049728723401	3.14566541124476	3.40616503292859	3.09709781969308	3.03140929213215	3.14791677919555	-0.861874192902324	0.18207111254441	0.564677675828242
Merged-chr2-33762143-2	chr2	33761643	33762643	+	828.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-43673.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	3.63414500360489	3.330420439744	3.21919860477373	3.39977472654297	3.23631498607086	3.40997666406003	-0.252077265335444	0.687995772891116	0.917193226920892
Merged-chr11-59548649-2	chr11	59548149	59549149	+	836.875	f1_balb.idr|f1_c57bl6.idr	exon (NM_145827, exon 4 of 10)	exon (NM_145827, exon 4 of 10)	5963.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	3.89741995655579	3.43617156917671	4.30361892062977	3.89239633013069	3.77797030313206	4.48183621745085	0.45624951910928	0.471729264462002	0.820254709994237
Merged-chr11-59229535-2	chr11	59229038	59230038	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-1271.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	5.16207251731888	5.46728458123837	6.14883646478102	5.53746799672147	5.7638150150664	6.0332256331234	0.248892828297466	0.545742176147864	0.85834429351586
Merged-chr17-33562485-4	chr17	33561993	33562993	+	956.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6786.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	6.22039995411828	6.55359006545961	6.51009512823128	6.42939632894924	6.44028634486578	6.4634195642587	0.01530844073228	0.955794733792692	0.989783387008628
Merged-chr11-34032776-2	chr11	34032276	34033276	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	MLT1A0|LTR|ERVL-MaLR	-14152.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.87064924499476	6.66718309488096	6.5986929005107	6.6728737639161	6.83881966900546	6.78697602572235	0.073194274920152	0.777860118698313	0.945251190347279
Merged-chr11-118159446-2	chr11	118158946	118159946	+	894.5833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30227.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.73783268590689	3.69809032829816	4.07298640996777	3.72300279590359	3.79456691734485	4.26446632076664	0.312757049751015	0.576429205542532	0.871585692229598
Merged-chr1-157446541-4	chr1	157446036	157447036	+	883.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12032.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	5.07087891361619	5.07043288556313	5.0579367600582	4.80271828217985	4.90089557454313	4.75072932394232	-0.525281734951661	0.16378181420766	0.537798828885102
Merged-chr2-49313283-4	chr2	49312775	49313775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290656, intron 8 of 9)	intron (NM_001290656, intron 8 of 9)	67375.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	3.78129060969608	3.79578240465398	3.5452986589376	3.64861634812672	3.83079811174265	3.67265570320161	0.0195225452912868	0.971765468825059	0.993783614343214
Merged-chr8-71528438-2	chr8	71527938	71528938	+	930.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	8999.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	3.72224865193314	3.28858074276534	3.72948433305356	4.43021591042006	4.47546828039101	4.79518119246136	3.05708303232629	3.38968617345133e-07	2.08925190459658e-05
Merged-chr2-143035553-3	chr2	143035064	143036064	+	991.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27505.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	6.16044403347069	6.37467091763745	5.92664143792274	5.78608332125233	6.28268621123131	5.91331488373613	-0.258296323763838	0.432585458079495	0.797386699146392
Merged-chr5-135615481-4	chr5	135614971	135615971	+	900.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17183.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	5.72429426383817	5.34744621314912	5.55066827306608	5.13937006161111	4.72135260741898	4.77016511760936	-1.34930071773203	0.000514975363847377	0.0107259249249093
Merged-chr8-84238327-1	chr8	84237827	84238827	+	643.0	f1_balb.idr	Intergenic	B3|SINE|B2	-1285.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	7.04255925909131	6.45635021114039	6.75979018051512	6.59331289495077	6.57985798333921	6.55722814812926	-0.315011671820632	0.274084857235254	0.671556325112809
Merged-chr4-127243724-4	chr4	127243236	127244236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-48.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	5.70267720150836	5.94007103896174	5.57684536485911	5.92092640853426	5.58737084961142	5.66842933241231	-0.0471082872983252	0.886721176509246	0.973794308941933
Merged-chr1-21078642-4	chr1	21078187	21079187	+	965.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	538.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	4.34942255123074	4.62268941758917	4.49615040470648	4.09364123217676	4.21374562716392	4.16352158079917	-0.89094389551779	0.0524147554877897	0.292785108393394
Merged-chr10-44434833-4	chr10	44434314	44435314	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23934.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.99469267722358	3.54359416045703	3.61544408839253	4.01325895859887	4.27389971749136	3.91060735046132	1.04513683263092	0.0642780827076385	0.330363398151031
Merged-chr7-25719044-4	chr7	25718529	25719529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	24.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	7.45752346102676	7.49891267629023	7.46588234389508	7.62627512531636	7.74309026803386	6.91274934406397	0.0220231837027289	0.939624975930821	0.986720663284284
Merged-chr1-105096281-2	chr1	105095781	105096781	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-259726.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	2.5096105849117	2.60779305486053	2.54836921466663	2.65734626393922	2.6374483629408	2.86769472411648	0.912487880652556	0.23352662269355	1
Merged-chr15-78586793-2	chr15	78586293	78587293	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5204.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	2.86360427483287	2.69783489026145	2.8859348291361	2.68902390466073	2.40480841238254	2.51859185137391	-1.59649793403953	0.049885362589097	1
Merged-chr19-3937810-2	chr19	3937310	3938310	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	2624.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	4.36398900748861	4.29945935579529	4.6319009267285	4.52449937297571	4.26896764190514	4.41813621262844	-0.0673736673041673	0.881269392211708	0.972635980891511
Merged-chr8-119605208-4	chr8	119604706	119605706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021441)	promoter-TSS (NM_021441)	34.0	NM_021441	21341.0	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	5.38056171205757	5.58264581708328	5.85597363694349	5.61900936859284	5.58672238578112	5.47411839417455	-0.0832487359364419	0.806270334652201	0.954125791654011
Merged-chr7-127228965-3	chr7	127228425	127229425	+	918.095215	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4136.0	NM_001360912	233887.0	Mm.258371	NM_146201	ENSMUSG00000045598	Zfp553	2600009K23Rik|AI431057|BC026401|C330013F15Rik|Znf48	zinc finger protein 553	protein-coding	2.92701259394068	2.97436114691712	3.23399325396111	3.06290041303916	2.99156116739924	3.02187837958223	-0.0907437525114275	0.892819980365034	0.975146620821922
Merged-chr18-34930990-4	chr18	34930504	34931504	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	999.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	8.66638174687163	8.81287564914231	8.42414686422218	8.71255102361594	9.10901058022947	8.85014260772584	0.351153877032353	0.129366989791248	0.481110596520523
Merged-chr3-22091304-4	chr3	22090804	22091804	+	943.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	14652.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.49034836752081	5.38466336304086	5.04740320954771	5.38739106632765	5.2537492365227	5.18578181564195	-0.104897094882316	0.772475605981491	0.943738624280671
Merged-chr19-38055459-2	chr19	38054959	38055959	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028760, intron 1 of 9)	intron (NM_028760, intron 1 of 9)	418.0	NM_001164362	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	5.01688701711249	5.35538238842596	4.99877238616216	5.25237708266988	5.39202064813592	4.82563454123303	0.103703102650366	0.796593787506887	0.95143561822849
Merged-chr3-104781717-4	chr3	104781166	104782166	+	814.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027982, intron 1 of 9)	CpG	610.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	2.99775723829524	2.91623792060652	2.78668519645143	2.83976404250537	2.77506506948815	3.21127878743013	0.209172026186687	0.774599226149962	0.944485094095756
Merged-chr15-8447385-2	chr15	8446885	8447885	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2922.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.4565364720307	5.60920952089788	5.69759722625183	5.75558722284377	5.70893690874149	5.35048825048229	0.0785193227841351	0.815649306980153	0.956465653447018
Merged-chr11-117326419-4	chr11	117325907	117326907	+	960.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5308.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.92821976165957	4.39415187973581	4.50156000692763	4.54179437688012	4.29322620594209	4.83599305826988	-0.170534775712294	0.720804673234074	0.928324696220711
Merged-chr13-45455786-3	chr13	45455295	45456295	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51649.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	7.01383136839063	7.37964123199957	7.10388028591987	6.91826494811702	7.16180557674543	6.9016860759365	-0.260970506680944	0.317324611255932	0.711230390378978
Merged-chr9-44235916-2	chr9	44235416	44236416	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1870.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	3.12338862251939	2.98345733292345	3.08354190437962	3.21380767823947	3.0829769805789	3.27038594014674	0.536941985540997	0.407150027588208	0.781340425184151
Merged-chr10-60261665-3	chr10	60261167	60262167	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15961.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.60061810219659	7.4113566772253	7.41776874730266	7.75600698978633	7.46001737473472	7.29449050419128	0.0597973187479603	0.810040886963682	0.954923881842298
Merged-chr10-80756889-2	chr10	80756389	80757389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1686.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	3.98634746205274	3.41619634374069	3.69668343728842	4.23443315194334	4.02021842180997	3.71321587614568	0.876970829674687	0.141671181749791	0.502372712168617
Merged-chr2-167760177-4	chr2	167759683	167760683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69006.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.83281370106727	7.67861584487472	7.80935298739946	7.72862092597959	7.66606936001794	7.5599363831602	-0.169795880186531	0.440335107162789	0.801751735698024
Merged-chr4-125114857-4	chr4	125114345	125115345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13036.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.49050736772653	5.5087876654097	5.93444443661088	5.89538922012864	6.20105806510882	5.99536964123303	0.707322814929564	0.0312836564077664	0.214138913845164
Merged-chr8-85298709-4	chr8	85298212	85299212	+	966.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019716)	promoter-TSS (NM_019716)	785.0	NM_022997	65114.0	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	6.66070208340121	6.87999490504113	6.88433874933494	6.46675759465567	6.1853941159837	6.67937935358848	-0.578872078758301	0.0414480911277844	0.254487364710794
Merged-chr7-26264052-3	chr7	26263556	26264556	+	690.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2775.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	2.74079811428984	2.97217352825544	2.86914869683824	2.82804422400185	2.59407841948895	2.75702296103365	-0.720313673207164	0.331976998124471	0.723284088925227
Merged-chr1-180943947-2	chr1	180943447	180944447	+	892.4166869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	1429.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.1460089919964	5.05500843741054	5.31977279880144	5.38036165570692	5.28116722106071	5.25854765017082	0.283329048482745	0.420260898698762	0.789521469804967
Merged-chr7-102153859-3	chr7	102153368	102154368	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_022979, exon 16 of 23)	exon (NM_022979, exon 16 of 23)	-37155.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	3.20775874952743	3.35628261380511	3.2337772079046	3.09012116350713	3.18916568018869	3.3606432578859	-0.231828352240943	0.713511449172972	0.92557476402444
Merged-chr12-112615861-2	chr12	112615361	112616361	+	786.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-4186.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	3.28575300679718	2.92030713333893	3.24975979100523	3.34043416015614	2.83957489906844	3.48163068133048	0.351406856172875	0.630477099195325	0.894734411238057
Merged-chr4-102792794-8	chr4	102792212	102793212	+	935.9739380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	32577.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	6.21810870358278	6.29994202877361	6.20769157775038	6.08523133088702	6.16048695999725	5.70736535656475	-0.389680233801621	0.199757601769703	0.588352275982348
Merged-chr2-113478648-3	chr2	113478150	113479150	+	905.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	37586.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.85209857958256	3.7342022290929	3.73640476302466	3.587993365211	3.64711652676134	3.53521911895022	-0.618538433671733	0.257956920784417	0.655431765745382
Merged-chr11-90224307-3	chr11	90223774	90224774	+	952.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-25202.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.94260263100948	5.7255845520291	5.81696775501708	5.47654049818501	5.28847326297502	5.31318776101601	-0.882879314737201	0.00682833316101578	0.0767488782469
Merged-chr2-165880793-2	chr2	165880292	165881292	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	1486.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.53842194653202	5.51055697505205	5.69805480552032	5.9169047546304	5.77612346457639	6.08390895666833	0.625742852500659	0.0477797115668843	0.2769525768065
Merged-chr11-114967772-1	chr11	114967272	114968272	+	617.0	f1_c57bl6.idr	Intergenic	Intergenic	-7355.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	5.97971982067875	6.10007116000783	6.42639075056293	6.13777408503206	6.49190591130279	6.51973289939202	0.36951597930848	0.227496172252528	0.622644333537758
Merged-chr15-85089668-4	chr15	85089187	85090187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080470, exon 18 of 25)	exon (NM_080470, exon 18 of 25)	42270.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	7.15462792087815	7.27180428135783	7.20566547944596	7.58917692223292	7.91313860427062	7.065838864156	0.543733448073627	0.0601760847080927	0.31765093296904
Merged-chr10-37112894-4	chr10	37112387	37113387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26039.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.08247017321416	4.193392248139	4.18594494482298	4.13677992700743	4.10877300766902	4.34082219449881	0.106081093758579	0.821432916707498	0.958007382080696
Merged-chr10-77520583-2	chr10	77520083	77521083	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4770.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	3.68665754587647	3.5673126781826	3.85763745378019	4.01465350818049	3.79226708739164	4.15585715253788	0.910202038628961	0.0909302574330453	0.401322063358024
Merged-chr9-44361247-2	chr9	44360700	44361700	+	975.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_027889, intron 1 of 15)	intron (NM_027889, intron 1 of 15)	470.0	NM_001357393	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	7.51711095724804	7.93705078984168	7.5338579156348	7.61838414504577	7.7230918019148	7.06520351114194	-0.249459220422591	0.383566323070983	0.76494131641868
Merged-chr4-135434257-2	chr4	135433757	135434757	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-452.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	6.92099564588233	6.84191033114173	6.63396030866156	6.91969198936463	7.10418312191202	6.30059571426286	0.0375341557797361	0.904473009482818	0.978131323042371
Merged-chr9-66598575-2	chr9	66598075	66599075	+	583.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5460.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	2.64032121862431	2.71185256138336	2.72695753351478	2.73287891555761	2.46443264425544	2.47714508162076	-0.727826248599612	0.355769216110489	1
Merged-chr8-120437457-4	chr8	120436953	120437953	+	917.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51413.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.42778475922588	5.48659973733794	5.30134183877128	5.88557399593067	5.81448672135975	5.46374816467438	0.617017282770965	0.0672292488179171	0.339092643246727
Merged-chr9-110781546-4	chr9	110781043	110782043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16642.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	4.60429939549701	4.50683749005876	4.41794325314323	4.35619305854788	4.12491014050555	3.94329534948403	-0.944958353562991	0.0466623104161392	0.273350994445657
Merged-chr7-97799833-3	chr7	97799360	97800360	+	818.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	11319.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.64129475801359	5.342902466353	5.97419043723456	6.1720856242989	6.41800020760069	6.28344450480355	1.10669741052434	0.000773564315690567	0.0148037579530774
Merged-chr12-69502129-4	chr12	69501624	69502624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26574.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	7.61037823089428	7.44636688618049	7.32921036639166	7.20626626437573	7.37924597783863	6.97736242326576	-0.388791003574211	0.12292444474957	0.469100941508007
Merged-chr2-121452218-4	chr2	121451711	121452711	+	964.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	3013.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	4.75680246104074	4.45022494947343	4.97820120074872	4.85340981293047	4.81798964862765	4.97483442406148	0.328876676597589	0.430367441365875	0.796220434934334
Merged-chr6-72551370-2	chr6	72550870	72551870	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	1723.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.738371348452	4.53527282455006	5.13459288241479	4.46542982215	4.10668580082229	4.66874428796524	-0.949749307957079	0.0475660920196089	0.276280775230824
Merged-chr2-25983442-4	chr2	25982934	25983934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276361)	promoter-TSS (NM_001276361)	-152.0	NM_001276361	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	4.20505386727775	3.85843565570814	3.87316846287607	4.1325699372649	3.77114938059942	3.78285257636696	-0.259370647800558	0.630282558574408	0.894683393050929
Merged-chr15-6564585-2	chr15	6564085	6565085	+	748.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15262.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.46927207561819	6.52625482043321	6.50329833442904	6.48294722360554	6.53835111952172	6.75653055393679	0.1460520755822	0.581002792080512	0.873188482316179
Merged-chr11-20331658-4	chr11	20331154	20332154	+	787.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	1059.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	3.20596127058816	3.23331188143867	3.17303923553178	3.25952393391576	3.13990199535095	3.41243417730156	0.258032370303642	0.680846756248241	0.914504446345046
Merged-chr6-146724880-4	chr6	146724388	146725388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346666)	promoter-TSS (NM_001346666)	-42.0	NM_001346666	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	6.19978951889779	5.73388964016073	5.91356070231624	6.3076176463501	6.00651794364915	6.11346341974497	0.308857985341096	0.330407070682937	0.721886788700559
Merged-chr4-58911682-4	chr4	58911201	58912201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355697, intron 1 of 49)	CpG	229.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	7.68128279970015	7.94215227543162	7.71542727877902	7.62210533488995	7.33932763334496	7.59915827005469	-0.386087182526584	0.103196969071427	0.428296315983601
Merged-chr4-135972102-4	chr4	135971600	135972600	+	868.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011942, intron 1 of 9)	intron (NM_011942, intron 1 of 9)	494.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	5.75151284306192	5.54797396777898	5.27125884523218	5.63284470619255	5.56127888617689	5.26721536403291	-0.0839788553397434	0.813686080595502	0.955940138311315
Merged-chr14-34314605-3	chr14	34314108	34315108	+	754.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	3881.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	3.97197251368808	3.97113622595499	4.05153412663513	4.33644240179002	4.07420202601229	4.30257052477461	0.688697343389327	0.152417767121674	0.520473491470443
Merged-chr2-102901544-4	chr2	102901068	102902068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	97.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.48286886673092	7.27504034311768	7.32091654513135	7.50010004201478	7.57060912215756	7.42208252555811	0.203469589018245	0.376343154112581	0.759174422146618
Merged-chr19-16781037-4	chr19	16780526	16781526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-93.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	6.51422212005525	6.84941599860687	6.39661170257563	6.83633616566735	6.69762204794906	6.60460681735619	0.168822210310535	0.547430823973047	0.85926739735431
Merged-chr15-31627496-4	chr15	31627015	31628015	+	875.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25399.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	5.39504680981147	5.45642064245171	5.52641563806714	5.72016794350894	5.52368373094358	5.50263959692466	0.247861961717279	0.448578064426758	0.807277523678988
Merged-chr18-75367322-4	chr18	75366819	75367819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	-46.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	6.84137133933096	7.06881654590835	6.96450502008559	6.8530814073201	7.03102275896652	6.910801963883	-0.0378812868778493	0.879100755440695	0.972074795996392
Merged-chr8-105564027-3	chr8	105563526	105564526	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	2038.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	4.72190843259227	4.72940136088234	4.68486100362481	4.92368774642331	4.91476866326425	4.86782061677915	0.431860798444422	0.263440058452837	0.661383847170923
Merged-chr7-112103140-4	chr7	112102656	112103656	+	820.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133758, intron 22 of 27)	intron (NM_133758, intron 22 of 27)	55540.0	NM_001360260	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	3.32610280287867	3.41911794650293	3.67689933577762	3.63135797052019	3.62573773339665	3.53807211218796	0.460888349316535	0.426907919154181	0.793904265858508
Merged-chr5-64205864-4	chr5	64205363	64206363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-24494.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.32114310312575	7.09511744551175	7.12084253216281	7.32978935120011	7.23393770897995	7.28687160625202	0.144884644137217	0.540440158886652	0.85632302227606
Merged-chr15-78875611-1	chr15	78875111	78876111	+	723.0	f1_c57bl6.idr	Intergenic	Intergenic	-1579.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	3.00405971457808	2.9253072300985	3.34808053233542	2.94166526016543	3.05057474994293	3.03438260455879	-0.391133635296176	0.570449223103067	0.869196267207969
Merged-chr1-139067436-2	chr1	139066936	139067936	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	89779.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	3.37569533606273	3.51077725124911	3.352976916199	3.15652512376008	3.36361447809653	3.58393105015866	-0.163986705159383	0.791395699621372	0.949737938863565
Merged-chr3-116613961-4	chr3	116613467	116614467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001289571, exon 7 of 16)	exon (NM_001289571, exon 7 of 16)	620.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	5.93552735706201	5.93311257470347	5.67351129565508	5.68988293872219	5.80864856652245	5.84083886577517	-0.147398863242303	0.633787583633712	0.896127330268889
Merged-chr5-122706154-2	chr5	122705503	122706503	+	655.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1541.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.30208416666425	5.1527121360753	5.0655453318181	5.05428884738417	4.98225889634784	5.22962669618831	-0.207858984090398	0.569594749285138	0.8688875602138
Merged-chr17-5202058-3	chr17	5201557	5202557	+	711.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206983.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	2.72576420228817	2.52816759673978	2.62343914664478	2.22776648961914	2.26041254253667	2.63591470889831	-1.55621399090407	0.0861836152224035	1
Merged-chr19-12005700-4	chr19	12005217	12006217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31023.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	7.01325272245927	7.18297666381243	6.95308177173251	7.10285245819738	7.26857559604792	6.84821850606514	0.0568542719286147	0.826351979536415	0.959130347937145
Merged-chr2-103971111-3	chr2	103970576	103971576	+	792.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	789.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	6.88750376824025	7.0253249461129	6.83389257616797	7.01808703445558	7.17561487077376	6.90726231586678	0.188586314391762	0.450662715060346	0.808443910792592
Merged-chr5-104509638-4	chr5	104509129	104510129	+	742.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166581, intron 1 of 1)	URR1B|DNA|hAT-Charlie	1277.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	3.52447115141563	3.83435278678767	3.4338748575936	3.84154621395489	3.70112193790445	4.07382567288294	0.839882316211216	0.150978934212206	0.5182047532504
Merged-chr2-122569656-4	chr2	122569190	122570190	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41587.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	5.46912763210366	5.5617303337332	5.1808200661813	5.80228273967614	5.72145079624277	5.48044559870723	0.479700686206155	0.163713365181171	0.537749158771312
Merged-chr1-51499017-3	chr1	51498519	51499519	+	790.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20620.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.0191890205948	4.94586627386028	5.24322613623007	4.93711301878468	4.92782236412662	5.21487007335113	-0.0908804887834268	0.811101347784877	0.955118634851824
Merged-chr2-170127920-2	chr2	170127420	170128420	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	3300.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.86503309239446	4.91533260805724	4.86826960870695	5.37102527705637	5.08283597085032	5.18285456082249	0.701773593112457	0.0589808726299113	0.314359769663284
Merged-chr9-13484690-1	chr9	13484190	13485190	+	588.0	f0_balb.idr	Intergenic	Intergenic	53329.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	3.82570102827123	4.20223594470316	3.67394898176329	3.45300758995334	3.42863464110258	3.84956732998005	-1.14041207478497	0.0566013015377506	0.306759662499391
Merged-chr12-17455360-3	chr12	17454859	17455859	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-89514.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.29973192248729	2.36268262661083	2.47855874515321	2.30968852667443	2.19787627910987	2.36251471892394	-0.610779932330776	0.468028968389985	1
Merged-chr3-55660466-4	chr3	55659952	55660952	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-122058.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	3.33710127256138	3.47020716330887	3.40921870885337	3.57971827199464	3.24574668166666	3.73947458697701	0.45181053818992	0.46171058249518	0.815107818354545
Merged-chr12-85958655-2	chr12	85958155	85959155	+	624.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	120386.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	3.90813595338126	3.95356964574335	3.54738001514024	3.5591100744272	3.6397533806721	3.2435950746386	-1.09860484175926	0.0840531751909823	0.383661081936741
Merged-chr5-32136535-4	chr5	32136057	32137057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	85.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	8.70283674534225	9.27672031211376	8.83161358671229	8.72595084383066	9.08625420682206	8.92058033611402	-0.0606201888763201	0.807288368595055	0.954539455664999
Merged-chr10-60081250-4	chr10	60080773	60081773	+	786.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-24984.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	3.94715445115237	3.9066286057727	3.93356835926368	3.51027127560357	3.46622823989933	3.75685257687821	-1.20393075629193	0.0282007789562421	0.200867181594846
Merged-chr1-43224384-3	chr1	43223878	43224878	+	718.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27617.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	1.94323639045102	1.95815255473688	1.96238789318539	2.20712318509863	1.99137404065134	2.24154746907267	1.52956049977847	0.108128749027954	1
Merged-chr2-103504602-4	chr2	103504094	103505094	+	903.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19441.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	5.33691246999543	5.68721904705712	5.69239361980587	5.21056298660245	5.45296193257055	5.54356210270188	-0.328247292630934	0.349062608701135	0.73710287140402
Merged-chr11-98587259-4	chr11	98586759	98587759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025661)	promoter-TSS (NM_025661)	-14.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	6.85928771789362	7.08994874665628	6.49650619649163	6.8569592660621	6.91386578108311	6.30977626947908	-0.178613811000502	0.571564749504318	0.869547320544841
Merged-chr6-113484121-2	chr6	113483621	113484621	+	837.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_134159)	TTS (NM_134159)	765.0	NR_145485	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	4.95377855494204	4.82013151797551	5.23526555582987	4.92711518363843	5.10485282198573	4.85788390192339	-0.0578637653667881	0.882990635968529	0.973343819056613
Merged-chr7-101418828-2	chr7	101418328	101419328	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2863.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	1.9486698400526	2.17208889107384	2.25671821768912	2.40496787975795	2.10006227783365	2.46097840207206	1.38474437345531	0.153083966722306	1
Merged-chr2-25500722-4	chr2	25500217	25501217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027062)	promoter-TSS (NM_027062)	-33.0	NM_001356407	30839.0	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	7.50066097283707	7.67946752177715	7.39666323534603	7.23762849345962	7.31905781003224	7.24975612884004	-0.390948295547898	0.0937089728830203	0.407789143645748
Merged-chr13-112928161-2	chr13	112927661	112928661	+	866.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028151)	promoter-TSS (NM_028151)	368.0	NM_172594	218629.0	Mm.35094	NM_172594	ENSMUSG00000042426	Dhx29	3732415M03|AU043276|Ddxx|E130202M19Rik	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding	5.98547060073292	6.228359803732	6.27605023257436	6.09914942832717	6.40978941401872	6.0844486314448	0.0884712145703231	0.768186450205195	0.942831449939876
Merged-chr1-51492055-4	chr1	51491628	51492628	+	919.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13729.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.12360473673249	5.21953488519317	5.63785619260113	5.56887348180593	5.41841210994328	5.88693249336984	0.56679957303081	0.127098141501025	0.476399034101412
Merged-chr4-43530581-5	chr4	43529951	43530951	+	746.65332	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6897.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	3.84659876511838	3.47498403035864	4.04550538231353	3.81257506357126	3.77080073982573	4.11272320981278	0.306503535427115	0.590810244606001	0.877301111216348
Merged-chr5-151210558-4	chr5	151210080	151211080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20387.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	7.6081758940774	7.64161088885731	7.1817872078779	8.09499291804071	8.27078976987009	7.62786964009723	0.762737770110764	0.00614358255955491	0.0709796192190287
Merged-chr6-72149888-2	chr6	72149340	72150340	+	556.0	f0_balb.idr|f1_balb.idr	intron (NM_001035228, intron 6 of 6)	MER5B|DNA|hAT-Charlie	-26643.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.67140722483147	3.70424313355268	4.01255360735094	3.45070541477144	3.59615609599841	3.99179547330365	-0.350183537879133	0.548420749476678	0.85972663155395
Merged-chr15-89177783-4	chr15	89177267	89178267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	3021.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	7.40746595067952	7.34778695878759	7.28339709016016	7.6316922005037	7.85626631008067	7.59485666223137	0.519263306646332	0.0241083483667105	0.182602223702284
Merged-chr19-55774999-4	chr19	55774511	55775511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	33201.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.65229756095043	5.47890784694161	5.00313993625163	5.41455634100143	5.63230180821712	5.35827920663952	0.115884305212129	0.759239380530906	0.940311236380535
Merged-chr11-97800178-4	chr11	97799650	97800650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010688, intron 1 of 6)	CpG	585.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	6.55416008377729	6.49821828305768	7.03262065882851	6.83233505307109	7.00067711328808	6.78920657485164	0.274419129715861	0.334686542793126	0.725167248723549
Merged-chr18-62164523-7	chr18	62163982	62164982	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER103C|DNA|hAT-Charlie	15499.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	6.69186752549015	6.57808159767468	6.57173523700001	6.54302959779282	6.52674110689911	6.61391274131364	-0.0936675379636262	0.715540545376876	0.926402055104375
Merged-chr6-136813311-3	chr6	136812821	136813821	+	870.955566	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021714)	TTS (NM_021714)	5073.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.1009739493535	3.97881175880976	4.03482009945956	3.88378194808607	3.67946867968318	3.69395882862304	-0.891911016302542	0.085560844823607	0.387334498729472
Merged-chr5-101958851-2	chr5	101958351	101959351	+	767.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	111070.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.71363908764632	4.40436592125412	4.68016768672649	5.09171752424734	5.42835994725317	5.36644772048883	1.53723532551037	0.00011574740934771	0.00320823132478489
Merged-chr1-144299350-4	chr1	144298830	144299830	+	986.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67B|LTR|ERV1	-50226.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.68910958766886	5.95762455096301	5.67184281330275	5.66317656153064	5.61500865022168	5.93259508529994	-0.0948410496649292	0.770286466559762	0.943392092118189
Merged-chr11-118250778-2	chr11	118250278	118251278	+	850.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-2186.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.00444935294183	2.99406418836548	3.51455309251291	3.18482512104048	3.07859639138439	3.38268745263152	0.124892146010616	0.856096008755118	0.966375464211684
Merged-chr2-3331803-1	chr2	3331303	3332303	+	541.0	f1_c57bl6.idr	intron (NM_001013376, intron 1 of 1)	intron (NM_001013376, intron 1 of 1)	825.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	7.02568782371984	7.1398029252094	6.38856081346919	6.94346237197859	7.05618307316755	6.42839845718641	-0.085220644723257	0.797330489542626	0.95172471395921
Merged-chr1-97386357-3	chr1	97385853	97386853	+	673.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-258050.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	3.00313067711908	2.81632450729519	2.89557970514234	2.50760673641038	2.73100470211518	2.59001305031735	-1.56890645189114	0.0500008763296382	0.284710389217583
Merged-chr4-95049401-4	chr4	95048924	95049924	+	910.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2798.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.97756237710894	3.70616339899717	3.50251480696715	4.02605727987071	3.53278861756379	3.69234696305719	0.0584127953493132	0.92192149261231	0.982542868764899
Merged-chr11-6456276-4	chr11	6455766	6456766	+	977.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-11823.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	2.54682218379048	2.94802516598067	2.55944172091766	2.90138763821684	2.60349513382557	2.83024636021416	0.409891948066399	0.611937386967704	0.886472363634617
Merged-chr5-65776821-3	chr5	65776332	65777332	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 3 of 19)	RMER4B|LTR|ERVK	13311.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	3.68082645913132	3.61787034877644	3.84988979637426	4.1765314480112	3.76603835982777	3.91978646077388	0.793682086990543	0.141172094059759	0.501979601184758
Merged-chr8-22706573-4	chr8	22706139	22707139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010546)	promoter-TSS (NM_010546)	-56.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	8.02088035659592	8.23612361188463	7.71752001591141	8.00113381057451	7.93578238285825	7.79102298216315	-0.145843643380154	0.548359367384175	0.85965540331284
Merged-chr12-117481186-4	chr12	117480686	117481686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35293.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	7.99699042302284	7.8524789977071	7.4999583419418	8.0740520775661	8.00131325540175	7.54620629107284	0.134958573997903	0.613748262200359	0.887300906025089
Merged-chr11-103979611-4	chr11	103979121	103980121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	12750.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	8.16047991884196	8.31789411563211	8.12088178474805	8.08407071438534	8.30574986949766	8.04866231380203	-0.0686830086703187	0.753484825148162	0.938549578325581
Merged-chr10-69240672-3	chr10	69240130	69241130	+	772.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	27436.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	3.91725115820461	4.07819626504026	4.71098953278293	4.43279912153393	4.08432677517516	4.36096740290838	0.0649668120557284	0.903701175302326	0.977858102400597
Merged-chr16-94498220-4	chr16	94497740	94498740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007834, exon 8 of 8)	3' UTR (NM_007834, exon 8 of 8)	28389.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	6.59641730550953	6.46352045847327	6.08810359933763	6.3109289778806	6.22169375444792	5.6643511910707	-0.497708163048883	0.141770311271352	0.502595716427364
Merged-chr4-136144878-4	chr4	136144360	136145360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008321, intron 2 of 2)	CpG-10505	1038.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.45273643117231	8.52506572697539	8.22909126742857	8.33526714019639	8.59205788172968	8.13420965479383	-0.0523333154131712	0.823823309749423	0.958451755471188
Merged-chr10-98754470-3	chr10	98753970	98754970	+	809.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-160172.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.61858251819405	3.76882543301874	3.69859555199742	3.81702937401644	3.37774092901042	3.91627787737666	0.0657177550687457	0.910387462025174	0.97984424692051
Merged-chr6-127582109-4	chr6	127581632	127582632	+	936.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4157.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.59192198264627	3.58292881097202	3.69908203551724	3.84881205692393	3.65856904836416	3.81958362865616	0.513892983809419	0.341379353235152	0.730816878642537
Merged-chr5-25528747-2	chr5	25528247	25529247	+	829.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1271.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	4.54311396978582	4.36002171935126	4.44028614482127	4.64233788131807	4.56667835464507	4.3735450204269	0.221210554288774	0.609630792418021	0.885304181219566
Merged-chr4-133879370-3	chr4	133878844	133879844	+	757.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-4613.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.09094439383016	3.920334586579	4.16954850935474	4.24543428629095	4.11146500561556	4.36688904785845	0.507156055445508	0.290916643559818	0.688708829270508
Merged-chr10-51497522-3	chr10	51496918	51497918	+	644.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013532)	TTS (NM_013532)	6520.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.76209484602995	3.66826634485664	4.41045327154789	3.81086455191078	4.0816037083098	4.36132974006113	0.330841561570067	0.572886537631038	0.869934493236159
Merged-chr12-40606027-3	chr12	40605461	40606461	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	159908.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.71602939036493	4.89020807086239	4.6963766441773	4.54984108540027	4.38434599568652	4.94306235232553	-0.3319896607595	0.44694960771352	0.806159145464037
Merged-chr11-31850549-4	chr11	31850058	31851058	+	913.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20382.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	3.7397782960283	3.80107219785374	4.05587808895562	3.54437704906417	3.3076113054939	3.64926744971364	-1.28036427781021	0.027528003318023	0.197845557453629
Merged-chr3-152568889-3	chr3	152568405	152569405	+	975.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-98008.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	4.35753497192962	4.21432290656421	4.03186682150598	4.0812113526388	3.79999172444662	4.05210675005684	-0.688986895001401	0.16881159630177	0.545438812408496
Merged-chr16-44349510-3	chr16	44348983	44349983	+	942.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144550, intron 1 of 17)	intron (NM_144550, intron 1 of 17)	2082.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	3.94313879539029	4.1589217781352	3.88794938321033	3.93999268452823	4.05491891137442	4.19732433272171	0.162066519045353	0.746446038539011	0.936300236930265
Merged-chr19-47050802-2	chr19	47050302	47051302	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	104.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	3.72844402869915	3.58624353269039	3.7264494284466	3.76024220532929	3.46145053112938	3.74528690574481	-0.0818838690776524	0.883442140061268	0.973362870329156
Merged-chr1-144006707-4	chr1	144006215	144007215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2566.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.76601080057718	7.06975717450124	6.46874677082347	6.80342771058736	7.12206009725458	6.44961864365586	0.0499058673984721	0.875465883537361	0.971052726689041
Merged-chr8-123064608-2	chr8	123064108	123065108	+	646.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-900.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	6.18861196935369	6.38137764675402	5.92493473150022	6.04707515491261	6.02970620709556	6.1700145540477	-0.189485793187206	0.528907207545785	0.850585575598857
Merged-chr17-71187906-3	chr17	71187375	71188375	+	857.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	3897.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.64298427674024	3.27582970052529	3.44120167802458	3.66292596432919	3.72766866678019	3.72946690705947	0.856344444279249	0.142403217659318	0.503768764353502
Merged-chr7-127299268-2	chr7	127298768	127299768	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 2 of 30)	B1_Mus1|SINE|Alu	3008.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	3.61963968318754	3.41983559788584	3.76226797151184	3.66588234158326	3.24055982100708	3.78295113335668	-0.0915203714035699	0.882088631927658	0.973002238292341
Merged-chr10-78185982-2	chr10	78185482	78186482	+	877.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-833.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	5.9518063046755	5.9451555504973	5.59262080472428	6.06911397048868	6.16244965556557	5.95288971330588	0.378164082317184	0.22290200485917	0.617776133760918
Merged-chr11-78536299-4	chr11	78535807	78536807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	-47.0	NM_009395	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	7.91986166967363	8.08637634102485	7.80185809529179	7.8897450653093	8.29021110196038	7.68665305332793	0.0651568045584499	0.800926523407988	0.95272776419586
Merged-chr19-41054862-3	chr19	41054353	41055353	+	752.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001043228, intron 9 of 10)	intron (NM_001043228, intron 9 of 10)	22260.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	2.55134743635459	2.40792102665612	2.55396350417832	2.66405051119566	2.76575842310936	2.9322949043618	1.63424244873901	0.0389486367426591	0.244739069615078
Merged-chr11-90252047-1	chr11	90251547	90252547	+	554.0	f1_balb.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	2571.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	3.12096334580803	3.29703855630555	3.30680320605364	2.99725954354163	2.80294068691359	3.21346079458778	-1.05884729418299	0.126879405087085	0.476008004801215
Merged-chr15-78771928-4	chr15	78771434	78772434	+	899.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	1511.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.45109152420046	5.29860837739951	5.70645792078246	5.51118498259981	5.39553186157561	5.44476641810718	-0.0665620227240927	0.845879880383254	0.963945177091542
Merged-chr2-57114657-2	chr2	57114157	57115157	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	CpG	381.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	3.97675505815151	3.62155121581013	3.60563182008707	4.22643122571474	3.68119511140387	3.67955706930947	0.44006764697197	0.457061278668248	0.811993709825292
Merged-chr4-135286999-4	chr4	135286514	135287514	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14254.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	4.30858391437877	4.3928475481469	4.45899411223591	4.16395417519885	4.0220253744195	4.60194819573529	-0.298681871514998	0.537876823439058	0.854882331952652
Merged-chr4-134548232-4	chr4	134547711	134548711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029100, intron 2 of 11)	intron (NM_029100, intron 2 of 11)	3955.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	6.81645287255834	6.7667797460432	6.65171827240638	7.27408433137773	7.34651485962116	6.93268997502988	0.694092590570093	0.00739028748044649	0.0813400847451047
Merged-chr17-10317397-4	chr17	10316907	10317907	+	814.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	1954.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	6.25343257745104	6.3324123940605	6.03900593544385	6.29222727930185	6.54675911195954	6.1466571357045	0.213225914950861	0.471782130573607	0.820329492221521
Merged-chr7-27591518-4	chr7	27590995	27591995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-57.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	7.23346100832749	7.30227406335668	7.3127593996838	7.65924915624084	7.71582034062335	7.40347292897646	0.477440103819053	0.0406393474727605	0.25139534789335
Merged-chr2-34961679-1	chr2	34961179	34962179	+	551.0	f1_c57bl6.idr	promoter-TSS (NM_001326601)	promoter-TSS (NM_001326601)	93.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	4.02244467972965	3.84452359812757	3.5392808320832	3.76946139891888	3.25317237087027	3.36917772499928	-1.159727277481	0.0689767281151745	0.343611592199544
Merged-chr2-102898862-4	chr2	102898389	102899389	+	983.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2776.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	5.68743603368761	5.57872749015226	5.79699191317349	5.4652198610676	5.75241003202927	5.90501414747364	0.0564033023684802	0.863842505613273	0.968269312109804
Merged-chr3-90248081-4	chr3	90247587	90248587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013901)	promoter-TSS (NM_013901)	-105.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	9.10607345089716	9.37483636467371	8.92732526847129	9.03526128741046	9.40098005268346	8.93149751521327	-0.0127512088955713	0.957863041181322	0.990000537228272
Merged-chr5-112323893-2	chr5	112323385	112324385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2484.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	6.14188729585044	5.90708158982709	5.89633388688939	5.65992185770704	5.46864021561523	5.1844889030721	-0.961311629452526	0.00452878804271102	0.0570884167761553
Merged-chr2-129502847-1	chr2	129502347	129503347	+	625.5	f0_balb.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	33755.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	3.86936223110776	3.75079132307305	3.80557502116504	4.14616140657786	4.04797787998024	3.87661475116219	0.686507785653197	0.178080886454761	0.559118345790044
Merged-chr19-10692024-2	chr19	10691524	10692524	+	733.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	3289.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	5.6670391709434	5.29943263837184	5.85538041715334	5.49039553498535	5.4113243996778	6.02313537770711	0.0739945598969839	0.845421196759583	0.963773214686551
Merged-chr11-106972484-2	chr11	106971924	106972924	+	687.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27101.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	5.63549718665253	5.34273093614575	5.3160568188502	5.99650873291407	6.00262714567087	5.65923786489855	0.839252844046887	0.012598165742977	0.118247961098887
Merged-chr8-70635200-1	chr8	70634700	70635700	+	585.0	f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-2744.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.83531060172194	6.44574658694077	6.07749110953451	6.31994632720772	6.58534836898221	6.529685726408	-0.0293934082943866	0.926728148562776	0.983568563710725
Merged-chr8-11554031-2	chr8	11553506	11554506	+	770.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1756.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	3.5900526404309	3.76884833454259	3.90065369589585	3.84352788121337	3.72512930485205	4.19049701478971	0.53975581758932	0.326243822362592	0.718568901772104
Merged-chr8-94093611-3	chr8	94093093	94094093	+	700.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5218.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	4.63923565595133	4.6101808385446	4.16328202431585	4.06607877730074	4.28722805765172	3.91101468644616	-1.03015083816907	0.043566839080027	0.262365893187442
Merged-chr3-87330947-4	chr3	87330361	87331361	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27020.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.53265390889075	6.27492461440681	6.37924569851344	6.65242293421032	6.43517830189545	6.2580254520142	0.103038723104992	0.71719824872891	0.926979087819795
Merged-chr2-150837041-3	chr2	150836553	150837553	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 10 of 12)	intron (NR_151505, intron 10 of 12)	5517.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.85460007038983	6.26362030631567	5.90916454361574	5.23106285212105	5.3146967795002	5.55769721254361	-1.22037639327716	0.000307993821933341	0.00712470112188754
Merged-chr13-10107497-4	chr13	10107004	10108004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033269, intron 3 of 4)	MER105|DNA|DNA	253299.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	5.02693930582451	4.98390973972784	4.52131059005369	4.87117414250079	4.67095961331995	4.44881814233183	-0.439804481242369	0.318099377246227	0.711822638282703
Merged-chr4-136285504-4	chr4	136285003	136286003	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-564.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	6.63828491431933	7.04732103343335	6.77291454033198	6.75951323771647	6.8389578878508	6.83147703843954	-0.0389674110640152	0.883284686558881	0.973347392063704
Merged-chr4-6376741-4	chr4	6376224	6377224	+	890.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	11044.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.69822065704624	5.93554704663203	5.65589452450289	5.81325888712748	5.65507531984642	5.57622637225451	-0.160266992506357	0.617049822282964	0.888695288754818
Merged-chr19-29940443-4	chr19	29939898	29940898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5392.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	5.5654828836138	5.51950627041084	5.49950667129095	5.67790597849765	5.77983797668799	5.77879350727186	0.401717600125635	0.199686978485602	0.588248843885427
Merged-chr17-73951770-2	chr17	73951270	73952270	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1574.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.25804464579933	6.23637469322542	6.72510114401106	6.34510668194368	6.55078061054638	6.6788696083891	0.185540602458622	0.535702298314666	0.853668337370661
Merged-chr5-23433413-4	chr5	23432929	23433929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	924.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	9.57825042005817	9.98427406410152	9.18827779089965	9.34957230764334	9.76065645387833	9.22823424828847	-0.214533382078157	0.439069264671527	0.800937323779458
Merged-chr11-118145349-2	chr11	118144849	118145849	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16130.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.21072212533458	6.25201110876196	5.97414642621542	5.64305707645066	5.51605225869453	5.65087013170032	-0.996475401855572	0.00110293536020073	0.0194187569724042
Merged-chr5-30913550-2	chr5	30913050	30914050	+	659.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133918)	promoter-TSS (NM_133918)	-236.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	3.36124614124863	3.37415937438088	3.5471073813914	3.67477628797387	3.860677260105	4.05420685529102	1.55450678016428	0.0067311041080237	0.0759535815867149
Merged-chr19-24992368-2	chr19	24991891	24992891	+	693.833374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-7138.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.72969043769919	3.68212646716251	3.62273234479188	3.40663137007235	3.63812443706676	3.93823309932906	-0.0277342722756896	0.961646615663612	0.990648883228567
Merged-chr2-119163339-4	chr2	119162834	119163834	+	905.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4454.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	4.72220740100391	4.86019028542714	4.66787075659017	3.90319830842277	3.69360920537482	3.90740352976539	-2.68210860272513	9.92759908626814e-08	7.10280021298538e-06
Merged-chr10-20040916-4	chr10	20040446	20041446	+	901.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 7 of 29)	MTD|LTR|ERVL-MaLR	106420.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.58388418469387	5.63107715780398	5.55046447475004	5.54809052867735	5.81108117759953	5.61323270181585	0.147004199363979	0.647526100275924	0.90148998195926
Merged-chr10-70197071-2	chr10	70196571	70197571	+	759.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	-7593.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	6.01214916729821	6.2794757437824	6.06571028030369	6.30773498438581	6.40912916834455	6.58525305207207	0.505337081465045	0.078739557668384	0.370805428404035
Merged-chr3-95708444-2	chr3	95707944	95708944	+	699.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RodERV21-int|LTR|ERV1	-20527.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	2.55408959957633	2.51748152419274	2.58396530804476	2.62712133040792	2.60868714076414	2.71909979642847	0.569941001222249	0.451296143152432	1
Merged-chr5-33008700-2	chr5	33008200	33009200	+	958.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10116.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	3.72056988927508	3.83717381680282	3.83577642937318	3.54055417731452	3.17863485853893	3.60111970650808	-1.27230932194189	0.0346006119691485	0.228038186628083
Merged-chr2-16135622-4	chr2	16135141	16136141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310455, intron 33 of 38)	intron (NM_001310455, intron 33 of 38)	-220663.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.70973253594888	3.6364605710746	3.25927485360563	3.71548923110465	3.22022961260192	4.06400166425435	0.54968784142038	0.425905914894371	0.793463399937346
Merged-chr11-20143907-4	chr11	20143401	20144401	+	848.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-30950.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.73470599462062	2.86961633107389	2.76021298152819	2.67883538370665	2.4331671368561	2.51024072518778	-1.4325480023174	0.0731855281516317	1
Merged-chr15-50840651-4	chr15	50840135	50841135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 2 of 5)	MIR|SINE|MIR	48414.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.33104779079702	5.1163412747584	5.1365080115132	5.0568607624793	4.9452791197577	5.2329776127782	-0.266732919801458	0.467806174455023	0.81815434317961
Merged-chr3-139110245-4	chr3	139109741	139110741	+	991.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35040.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.37076670439091	3.28531717937845	3.1434085553615	3.24732922953647	3.32227996476081	3.27552408061466	0.0344442110951766	0.955794525871391	0.989783387008628
Merged-chr7-19315421-2	chr7	19314921	19315921	+	838.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-5376.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	4.65143663965818	4.04979716158464	3.98796958413861	4.26071693487701	3.93511700848849	4.16048023257814	-0.4139322405452	0.43925334663135	0.801063133660301
Merged-chr11-116614699-2	chr11	116614199	116615199	+	852.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	RMER1C|Other|Other	9553.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.48917108532851	4.49186761656355	4.54967175049452	4.42037520374165	4.51957542161052	4.69369291932526	0.0865684400200717	0.838257511040444	0.962493207106836
Merged-chr11-95749837-4	chr11	95749325	95750325	+	942.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_201609, exon 1 of 5)	exon (NM_201609, exon 1 of 5)	758.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	5.88321583677074	5.82711998643019	5.83476258424655	5.81946910758261	5.84260036391789	6.0573355508857	0.095086590010729	0.752230083138741	0.938157651950668
Merged-chr10-95939941-2	chr10	95939441	95940441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-722.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	6.1182789654218	6.06605598108294	6.26007280905321	6.13454615651405	6.26451309831881	5.76138685842741	-0.100920716296298	0.744548078182542	0.93602001132266
Merged-chr8-88118686-4	chr8	88118198	88119198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029074)	promoter-TSS (NM_029074)	-61.0	NM_029074	382030.0	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	5.42788782570702	5.54499999347523	5.48183906778747	6.00006712311701	6.09698414567564	5.79797790023429	0.896318873505303	0.0043598391302686	0.0555548248257001
Merged-chr5-72205295-2	chr5	72204795	72205795	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1952.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.72361136114214	5.88287250261405	5.441639325727	6.1962992018157	6.08228422492178	5.69105129184341	0.546149555810604	0.107815554902491	0.438599623170356
Merged-chr11-115185612-2	chr11	115185112	115186112	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025400, intron 2 of 6)	intron (NM_025400, intron 2 of 6)	1704.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	4.66621912585676	4.46863335553344	4.75860452786543	5.33224987174022	5.1033461170646	5.27311177602693	1.33744138474964	0.000608706897993661	0.0122696907868839
Merged-chr11-43433717-4	chr11	43433233	43434233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_148673)	promoter-TSS (NM_148673)	2.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	6.83258660216641	7.18658914350139	6.72598673320772	6.92181261546089	6.99435134032536	6.96525976954421	0.032089278884954	0.903875021803655	0.977904183050599
Merged-chr4-133820975-5	chr4	133820404	133821404	+	761.119995	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53827.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	4.46278630591281	4.39491643904398	4.54249117303088	4.41405092988102	4.63564759412602	4.64783869179258	0.266402225775122	0.532529751584646	0.851971173271146
Merged-chr6-136810818-2	chr6	136810318	136811318	+	629.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177688)	TTS (NM_177688)	2570.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	4.87087846374536	4.65409946394469	4.4712213434046	4.97899145847781	5.02398882674738	4.95130301919361	0.672751924346	0.0965936199786813	0.414325490079944
Merged-chr2-11426505-2	chr2	11426005	11427005	+	996.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-28005.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	4.82473842794786	4.93524999834998	4.46565931340391	4.78062351450919	4.38407230317892	4.18557749384866	-0.678889694134227	0.154205858842384	0.523391948075144
Merged-chr15-58014391-2	chr15	58013891	58014891	+	823.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	19903.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	3.03447095258368	3.08200753302369	3.247820065989	3.63296824916668	2.90469209711791	3.20412929402157	0.659518596939995	0.353774357919886	0.740929143625235
Merged-chr2-167633785-1	chr2	167633285	167634285	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-1780.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	5.92860849680285	6.1179318858719	5.93430848170033	6.04754196467149	6.38044501553907	6.13358401344565	0.345286465519801	0.248428752839355	0.645533060591377
Merged-chr5-148535083-1	chr5	148534583	148535583	+	658.0	f0_balb.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	16590.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.84759820342387	3.72787553620126	3.6972337048862	4.03430773456511	4.02122811763922	4.20799232253879	0.992178797796448	0.052999612113344	0.294943266768802
Merged-chr16-44187304-3	chr16	44186820	44187820	+	914.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	13923.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	3.578485862834	3.87131867232769	3.45844502069122	3.83134596919856	3.73924944219186	3.59067792144696	0.235336891256356	0.683693102429924	0.915479407206029
Merged-chr16-92788420-1	chr16	92787920	92788920	+	637.0	f0_balb.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	37654.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.39279826502673	3.42884952573218	3.66896033240339	3.15740495924342	2.98168541882951	3.38267668484363	-1.31947520228395	0.0440161744414272	0.263942566584918
Merged-chr17-51220100-4	chr17	51219587	51220587	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40735.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.86936359070497	7.24167308255169	6.939323563168	7.371274667741	7.69400805080052	7.19911754615229	0.61867456664059	0.0230407988342669	0.177411230015354
Merged-chr5-66014146-4	chr5	66013642	66014642	+	720.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9857.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	4.80511843287459	4.78481215978287	4.76052294034778	4.40419428462637	4.03268401513363	4.23006814838982	-1.42442888620149	0.00145194251253534	0.0241481576220348
Merged-chr19-4334836-2	chr19	4334336	4335336	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-28614.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.09938668185306	4.56947426158908	4.73223725936698	4.55699398206774	4.48296599495294	4.64848625982721	0.181072867194696	0.698846024340085	0.920452394037037
Merged-chr2-120562411-3	chr2	120561901	120562901	+	867.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	B2_Mm1t|SINE|B2	1458.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	4.61967683270506	4.66988627368002	4.91420126332835	5.66401081615609	5.96096924151753	5.88722684226494	2.26945325622787	4.05795814432098e-10	4.73568837689565e-08
Merged-chr10-98797026-3	chr10	98796546	98797546	+	732.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117596.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.56168861909364	3.59467546484723	3.65588094624839	3.69266318715484	3.55474633956473	3.39189274710318	-0.161815939227394	0.776521121185912	0.944879784908856
Merged-chr18-77938394-4	chr18	77937883	77938883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-84.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	7.49446150705376	7.58207645213394	7.42575238107984	7.81953417579108	7.86128649114323	7.63313004619342	0.399006657968144	0.0759066961340251	0.36265757762517
Merged-chr2-75658042-2	chr2	75657553	75658553	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-1206.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	7.10100725421651	7.23635044419373	6.51954740948172	7.6635206779682	7.98290140001525	7.09901710078773	0.947689022347056	0.00469990187094966	0.0586594866414163
Merged-chr12-95747538-3	chr12	95747039	95748039	+	793.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	55313.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	5.20392311219915	5.33441577657198	5.46790191492746	5.62924108873067	5.61006751180254	5.53070702551538	0.503372155178329	0.128975472050268	0.480255574973539
Merged-chr2-131235115-4	chr2	131234618	131235618	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1055.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	6.38562979071113	6.79714411499379	6.22545697298677	5.93156555714982	6.64322065356833	6.05922305321405	-0.382165730704234	0.278966780931835	0.676449294675764
Merged-chr9-21901656-4	chr9	21901135	21902135	+	991.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16548.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	3.78360570686727	3.56070683769558	4.0012178826085	3.97177301518332	3.98122758442278	3.42059099229347	0.0985783334928846	0.871481486684482	0.970222087171093
Merged-chr13-100750950-4	chr13	100750445	100751445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6286.0	NM_025369	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	4.53286275704899	4.25731118702678	3.9263424691171	4.06063642991805	4.18388854116303	3.99852492594317	-0.507692674785917	0.323347910580363	0.71668986599242
Merged-chr18-70436023-3	chr18	70435512	70436512	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-36442.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	5.7032453016736	5.57226097859544	5.75719974699703	5.98076472072376	6.35608901966117	6.22660395063238	0.923223240429891	0.0026997004930057	0.0388769966133939
Merged-chr1-58725990-4	chr1	58725488	58726488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-4564.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.85484591531517	7.52149835561566	7.47562041281326	7.70241385874903	7.89330089099625	7.52213872532136	0.127535846516347	0.610322227631805	0.885531676978709
Merged-chr3-53465714-2	chr3	53465214	53466214	+	705.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	1897.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	3.09123033566808	3.10043924324576	3.17791975642484	3.43417612635301	2.7973309774836	3.41632696024963	0.518382951579102	0.473859901703949	0.821131043651886
Merged-chr5-147077557-4	chr5	147077123	147078123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181730, exon 1 of 3)	5' UTR (NM_181730, exon 1 of 3)	277.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	7.86555087532504	8.03870749819508	7.64786737296073	7.29513234347424	7.20743545919204	7.39410450136424	-0.831576611796566	0.000464208675346569	0.00991933113976306
Merged-chr5-146805185-4	chr5	146804694	146805694	+	971.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10238.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	7.44486461257977	7.2855871653657	7.30774252589701	7.46814982600555	7.70186468196631	7.33068787126463	0.248218380651605	0.3041986033211	0.700749076303039
Merged-chr3-8973439-1	chr3	8972939	8973939	+	690.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9293.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.23698840541636	4.06424800056703	4.37766605949618	4.53614558694913	4.65376426007512	4.4879175695305	0.889816818972089	0.0466491456899769	0.273328668065552
Merged-chr8-119347669-3	chr8	119347175	119348175	+	870.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024219, intron 3 of 3)	intron (NM_024219, intron 3 of 3)	3137.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.21685394966883	3.1054346438748	3.06183180776661	3.02671492650839	2.93727519652954	3.24868290792865	-0.27464164655894	0.680168388223658	0.914139397449033
Merged-chr4-47262809-4	chr4	47262343	47263343	+	801.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 10 of 39)	intron (NM_009928, intron 10 of 39)	54831.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	3.84456535059429	3.61510260399777	3.65295370678798	3.66912200445723	3.49033441317437	3.56016705781983	-0.4755887173693	0.394866976681578	0.772579826044138
Merged-chr7-145285410-2	chr7	145284910	145285910	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1399.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	5.84310347206703	5.74458434905318	5.50496423545443	5.52463397301594	5.14016120432202	5.44855970364325	-0.64574347459106	0.0627503205214398	0.325745253934391
Merged-chr6-39222720-4	chr6	39222209	39223209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-15936.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.00640754926284	5.46358132241812	5.3404097043494	5.56796449241916	5.35288375524151	5.33912400657083	-0.420952377467248	0.261286811981462	0.658881274511238
Merged-chr14-16244506-3	chr14	16244001	16245001	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-1170.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	7.09800835847525	7.23137350716255	6.96007826433015	7.44088493689838	7.86035042508085	7.55009232915441	0.77984144452656	0.00214927086653976	0.0325927702320103
Merged-chr4-46560297-4	chr4	46559742	46560742	+	920.9791869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	6198.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.17476545924598	5.28006961270832	5.45279063504763	5.89343918692429	5.80178814144744	5.68428288981058	0.948285163647667	0.0038256028633207	0.0502955858826337
Merged-chr11-3172506-7	chr11	3171985	3172985	+	984.228577	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	20978.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.67921656203399	6.86843591564335	6.89349959818036	5.14718559912817	4.98649597039291	7.33360007861251	-0.678370870149432	0.580392377044028	0.872817517129402
Merged-chr14-17885495-4	chr14	17884859	17885859	+	968.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-96285.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.72128075262619	5.01385616198775	5.01189139299408	4.55270720607937	4.63999280384721	4.90536663953614	-0.50290418018885	0.220651793189061	0.615219256211797
Merged-chr1-69686436-2	chr1	69685936	69686936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011770)	promoter-TSS (NM_011770)	-476.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	3.81060414666837	3.75831932369372	3.68884523511301	3.83739241646186	3.60942576144167	3.4142542053564	-0.399160575674129	0.483343934028749	0.82615562668524
Merged-chr13-55571120-4	chr13	55570613	55571613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145382)	promoter-TSS (NM_145382)	7.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	5.30633534431988	5.33123756669272	4.98081461499784	5.43835711575586	4.71265306379237	4.89133199837839	-0.344226815379609	0.4194294845297	0.789006446666644
Merged-chr10-34019713-4	chr10	34019212	34020212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025614)	promoter-TSS (NM_025614)	-96.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	7.53309963789855	7.41891617875898	7.67594640030336	7.43071775825441	7.46677388008225	7.489469381086	-0.116700068603636	0.607649871119278	0.884653673877384
Merged-chr2-132221741-4	chr2	132221269	132222269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26019.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	6.66934789324028	6.64858843677483	6.58760814845724	6.52941877824763	6.85241645545971	6.72845412368254	0.121257008060277	0.644671841644556	0.900287351502017
Merged-chr4-134187180-4	chr4	134186682	134187682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-97.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	7.05231564269465	7.15906457868129	7.03789082456247	6.94715500144645	6.6581072074272	6.33248221249491	-0.625698533278546	0.0258226712176043	0.190546347674661
Merged-chr3-145107057-3	chr3	145106555	145107555	+	669.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA7|LINE|L1	-7949.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	3.57075842028183	3.09784302810966	3.29533156943529	2.99295003688309	3.09232044013905	3.42107080489779	-0.655429596563467	0.339116113237819	0.729057813336113
Merged-chr4-62359551-7	chr4	62358962	62359962	+	814.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	1134.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.82032771608901	6.92183071298665	6.6692273000441	6.94127114207099	7.12732793873244	7.03969793782984	0.346095589123134	0.167415303681364	0.543260767050892
Merged-chr2-32586352-2	chr2	32585852	32586852	+	720.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-726.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	5.29595944895342	4.99506476874223	5.48314124949648	5.24135932816407	5.03660515740419	5.62233037024946	0.0913160552430081	0.817238406757658	0.956754861188725
Merged-chr6-142573042-4	chr6	142572552	142573552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-1438.0	NM_001330366	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	3.19797254905014	3.62726597599441	3.42152919406308	3.15592818286152	3.001170050581	3.21096688503845	-1.28959555529656	0.0506479333697114	0.286668474241681
Merged-chr3-129969539-4	chr3	129969028	129970028	+	912.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	678.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	3.93671866681178	4.05583575434075	3.98676522815564	3.42354591479429	3.25829624115926	3.54503349113503	-2.15088644778374	0.000253338037887816	0.00608011290930757
Merged-chr11-80094681-4	chr11	80094186	80095186	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001029856, exon 2 of 23)	exon (NM_001029856, exon 2 of 23)	5286.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	4.70971984983007	4.52474155691445	4.54349306260588	4.96112774320088	4.95639521354088	4.61190368944027	0.612441578662493	0.139351796163361	0.498803418014323
Merged-chr17-65772661-4	chr17	65772192	65773192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133685)	promoter-TSS (NM_133685)	60.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	7.49437186517025	7.26774739430855	7.06368411915309	7.48550911407269	7.35521995224014	7.2973375974939	0.129728494151844	0.602671909237896	0.882397657327329
Merged-chr7-118741841-3	chr7	118741337	118742337	+	692.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	1566.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	5.55225149206523	5.51217418428047	5.65940080620111	5.95916893284944	6.06175859819314	5.97058632469106	0.777174393757889	0.0104006984352425	0.103284558467557
Merged-chr8-82401279-4	chr8	82400787	82401787	+	994.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	1299.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.63665312241826	6.80966695148566	6.70925193406635	7.44750505357141	7.66580350254017	6.8966369991772	1.00763947122743	0.000531275676762078	0.011005123723915
Merged-chr11-87026077-2	chr11	87025577	87026577	+	688.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-32315.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	7.37378231692369	7.52991903612097	7.59868265631684	7.36230804360443	7.48117767136999	7.37561617092211	-0.13286768378533	0.562158588912044	0.86560636450104
Merged-chr10-122055744-2	chr10	122055244	122056244	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8429.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	2.92740422605197	2.92477979863475	2.6152184626435	2.74056145492891	2.62611337232491	2.94246676580833	-0.319583997836607	0.677640965988251	0.91306068429495
Merged-chr5-20884370-2	chr5	20883870	20884870	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177601, intron 1 of 1)	RSINE1|SINE|B4	1917.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	2.93743512395505	3.07566412041668	3.23062577964154	2.97731583154292	3.10699316830196	3.24679570037602	0.132733264743839	0.842330959781008	0.963014702903935
Merged-chr17-71289917-1	chr17	71289417	71290417	+	1000.0	f1_balb.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	21094.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.97482361572998	3.78309896269241	4.23666964174703	3.55407908848688	3.4777141038253	3.91220370573271	-1.14221228815974	0.0461998760211408	0.271905452254002
Merged-chr5-90324405-3	chr5	90323925	90324925	+	661.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_198010, intron 1 of 32)	B1_Mur1|SINE|Alu	41760.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	4.19580440937098	4.0220902816521	4.03682831030683	4.57185001932217	4.44833605597716	4.67532037922771	1.25181661928223	0.00659598159176129	0.0748552149873532
Merged-chr5-72558210-2	chr5	72557710	72558710	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_153351, intron 2 of 21)	intron (NR_153351, intron 2 of 21)	1435.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	4.95640083788485	5.17768845443867	5.14754532943747	5.31850561228634	5.29971242484986	5.03680653998636	0.282816926125362	0.439123060447364	0.80095471312154
Merged-chr13-100148529-3	chr13	100147986	100148986	+	852.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 15 of 15)	ID4_|SINE|ID	23631.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	4.42458698016281	4.27394037133892	4.7867055081299	4.7852240325198	4.56007966375027	4.77945508492521	0.501918824087564	0.258039689322506	0.655513341978737
Merged-chr11-22971979-4	chr11	22971486	22972486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011663)	promoter-TSS (NM_011663)	-19.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	6.75655364339012	7.3342349633061	6.40799884514022	6.20915211126207	6.75867709922558	6.61665893483028	-0.54563587526265	0.117750801202091	0.458141245039914
Merged-chr4-99126991-4	chr4	99126496	99127496	+	856.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-6081.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	3.55265956008272	3.98457066291431	3.73342867934079	3.83024005573635	3.99964875714727	3.80432342787046	0.352120984517618	0.523235539260516	0.848099094240826
Merged-chr4-130800727-4	chr4	130800234	130801234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8197.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	8.82786843645295	8.48849573692938	8.33674106684789	8.6765349229713	8.865532229512	8.34839793884745	0.112048217570872	0.657782595027443	0.904859102731141
Merged-chr11-117175175-4	chr11	117174677	117175677	+	934.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24484.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.4694828287474	6.50674595507692	6.10358346345698	6.24572698015363	6.38836690819244	6.14193989227188	-0.186623410917635	0.524183077475321	0.848618613697136
Merged-chr2-167225152-4	chr2	167224634	167225634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 3 of 9)	MTC|LTR|ERVL-MaLR	15403.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	7.50379205703351	7.53996002684291	7.58421439155854	7.55813038941082	7.74690299398476	7.51371816357843	0.109174028335744	0.628141325277943	0.893508518159715
Merged-chr12-102451701-4	chr12	102451193	102452193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11880.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.76993108128965	7.97262971947512	7.56265847659363	7.91636922582123	8.10549603001092	7.65878728597685	0.183327093288263	0.464679769948096	0.816459397744841
Merged-chr12-91765362-4	chr12	91764869	91765869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21067.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	8.20250698685917	8.43954585239159	8.30988074363754	8.50008936219076	8.66016256251492	8.03686323926809	0.155906453741751	0.531850254013188	0.851844929566887
Merged-chr16-91476843-2	chr16	91476343	91477343	+	722.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8372.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	6.58661428998719	6.47248647832701	5.99415183567461	4.82347675876816	4.8251500100983	5.03328355199112	-2.85959281612847	2.85663040144688e-15	8.25328133484693e-13
Merged-chr6-71144053-6	chr6	71143551	71144551	+	905.5610960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178413, intron 1 of 9)	CpG	329.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	4.98498925459567	5.03863218503178	5.11261162487725	5.06429935487395	4.86925969963828	4.81612635537114	-0.258957568969906	0.492014639475569	0.83087234321328
Merged-chr15-75903504-4	chr15	75902994	75903994	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029663, exon 3 of 10)	exon (NM_029663, exon 3 of 10)	5850.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	4.23650483597334	4.11259635218082	3.97144818805995	4.22437440517586	3.81349239832738	4.09109203635152	-0.195435796012718	0.700671270193561	0.920989221500556
Merged-chr4-129508105-4	chr4	129507600	129508600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5481.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	5.81756642257665	5.554780350799	5.95705126612797	5.92739335896986	5.66504794571451	5.55764761209885	-0.0882721461063671	0.79114164100607	0.949694766870106
Merged-chr8-82774156-4	chr8	82773661	82774661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145600)	promoter-TSS (NM_145600)	-35.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	7.90702452267674	8.28457563954062	7.79614237962694	7.75461346978306	7.70399877915428	7.33903682249147	-0.573235666424284	0.0281056038543975	0.200480094667476
Merged-chr16-34121010-4	chr16	34120530	34121530	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-153992.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	2.99268585516204	2.99580730652581	3.05957801493361	3.03971817835551	2.74574669070436	2.89152370669396	-0.574087826769994	0.411451578116311	0.783936227145585
Merged-chr18-12154302-4	chr18	12153814	12154814	+	927.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 12 of 12)	intron (NM_024182, intron 12 of 12)	-14416.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	2.44322538674779	2.23585899090829	2.48606544034936	2.31460576475944	2.13451908498555	2.43473391507668	-0.623964430250467	0.475075717569292	1
Merged-chr11-101587881-4	chr11	101587396	101588396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 4 of 7)	RMER19B|LTR|ERVK	5597.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	6.08009961753923	6.05262075638085	6.07755272766976	6.26793914693217	5.72586346280121	5.82828164552282	-0.184100683824335	0.565563065150843	0.866815789886591
Merged-chr12-84761450-4	chr12	84760915	84761915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023409, intron 2 of 3)	MLTR14|LTR|ERV1	11697.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	7.9214408035201	7.8448734612373	7.56756676518556	7.79310986725257	8.02192963339643	7.38627274512628	-0.0302143838858071	0.910032899560945	0.979763851187084
Merged-chr4-127022309-4	chr4	127021785	127022785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023603, intron 1 of 9)	CpG	984.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	8.2509668401541	8.49290571443131	8.19343758574259	8.10098735696619	8.1314087557713	8.38928962311955	-0.158439996149443	0.48284755617942	0.825853985496863
Merged-chr13-23552146-2	chr13	23551646	23552646	+	848.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	-503.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	4.79349029903332	4.84342926853615	5.24661528444719	5.01480668384752	5.05264992810368	5.67433639775223	0.633963261731544	0.135417648861675	0.491765885151759
Merged-chr7-64358189-2	chr7	64357689	64358689	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	L1MB8|LINE|L1	15906.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	6.95187779715117	7.10787876924412	7.25907442499666	7.22610828940631	7.53076289794612	7.04310907468613	0.278660205031447	0.292593075874089	0.689847122785084
Merged-chr19-53516452-1	chr19	53515952	53516952	+	796.5	f0_balb.idr	Intergenic	Intergenic	-12866.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	2.35007039695908	2.53895792247757	2.63111103951004	2.18267000365542	2.42882077707281	2.52168907554437	-0.771981272745475	0.380288582474296	1
Merged-chr7-45896834-4	chr7	45896345	45897345	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	-134.0	NM_021482	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	5.2533049060795	5.33406994879786	5.39428602910846	5.31899188513355	5.51274643992784	5.79772268200967	0.433476967085849	0.214297458382859	0.607446165658035
Merged-chr14-93701247-3	chr14	93700750	93701750	+	841.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	189419.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.85798325619117	4.13337925064199	4.36654739477227	5.10927636945229	4.85068357059817	5.28429704119351	2.38711119105763	4.80081465721177e-07	2.83711779827611e-05
Merged-chr10-99460965-4	chr10	99460473	99461473	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148198.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	7.34577204934435	7.56221624215597	7.42126902775092	7.24622325166465	7.62520974677181	7.07065145081087	-0.146295714020801	0.58049258884575	0.872884157869997
Merged-chr2-35452606-3	chr2	35452096	35453096	+	972.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	8853.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.45388346404675	5.84043445513407	5.70029298408648	5.16970851391028	5.5515401677957	5.30013875867008	-0.596509870169647	0.09484806130198	0.410577332473996
Merged-chr2-103945993-4	chr2	103945510	103946510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11985.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	5.97930606334738	6.11438793023647	5.96941086342198	6.07766066033952	6.08856783311779	6.14209855280761	0.127709444339625	0.655386084335732	0.904253611535387
Merged-chr2-158132117-2	chr2	158131608	158132608	+	990.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 5 of 12)	intron (NM_009373, intron 5 of 12)	14284.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.74440573227082	4.96486411515926	4.87850406058059	5.13751701474876	5.04726729919944	5.21738158236917	0.567222540633478	0.131051801452574	0.483837071958386
Merged-chr5-34636686-4	chr5	34636218	34637218	+	940.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356979, exon 2 of 13)	exon (NM_001356979, exon 2 of 13)	494.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	5.34800724607079	5.31325705220811	5.48592139415194	5.64187749362651	5.53515592645205	5.01105909726631	0.111335166425052	0.764778883398768	0.942053609620203
Merged-chr8-121850135-4	chr8	121849657	121850657	+	939.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20588.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	2.82471545229434	2.59414407823732	2.53223519288532	2.75293589733998	2.57851761954173	2.92042605054629	0.496659706010385	0.527154463712359	0.849836645417483
Merged-chr11-98787025-4	chr11	98786530	98787530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8486.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	6.83010538940012	5.63866121276394	6.28089020068173	6.71841948218575	6.44467980180566	6.05232174706005	0.140839652789539	0.728701509316113	0.930478966998914
Merged-chr6-38968149-4	chr6	38967674	38968674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	49188.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.94616651144636	5.7068015261116	6.21804194403554	5.95294927145104	6.09296612998158	6.11680607602883	0.163268718975792	0.603228037351736	0.882544198306255
Merged-chr5-92436621-2	chr5	92436121	92437121	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1422.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	4.85094341449715	4.88369517180661	5.34889607698385	5.1104235530369	4.74430057213698	4.97465917526292	-0.190886434551684	0.642557575643822	0.899438418121699
Merged-chr17-74457818-3	chr17	74457292	74458292	+	946.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	1316.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	7.01327006626249	6.89973257595718	6.63229279369597	6.73403208269573	6.85101322286543	6.82027003138089	-0.0994068061436382	0.702556100997788	0.921908665861083
Merged-chr7-25268140-4	chr7	25267649	25268649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	450.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	8.40466918092107	8.48927798739371	7.81276526842063	8.18502736684781	8.38763836634705	7.89495311257703	-0.139153592467707	0.614549786403164	0.887509542539593
Merged-chr1-43520788-2	chr1	43520293	43521293	+	618.75	f0_balb.idr|f0_c57.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75042.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.60069573048078	5.71915371212366	5.69251147012702	5.5216608825538	5.79501858988658	5.80501041838067	0.0788619548050448	0.804712171987875	0.953651704501661
Merged-chr1-75435976-4	chr1	75435477	75436477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357171)	promoter-TSS (NM_001357171)	41.0	NM_001357169	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	6.36041719640092	6.25474261266616	5.82775164371202	6.13648354449392	6.35659651432906	5.89056571162648	-0.0424904443248521	0.896423205376782	0.975830842039735
Merged-chr19-56719795-2	chr19	56719295	56720295	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-2577.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.97447694903186	4.35683755525387	4.66325540776691	4.79756099961218	4.80348556379501	4.64792904352076	0.142814082635117	0.747308226904081	0.936600911319824
Merged-chr18-11353259-3	chr18	11352742	11353742	+	874.622192	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-280034.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	6.07727097862728	6.57699527739798	6.00499262285984	4.83188617236384	4.78571521818354	5.0900268056143	-2.61803883457497	1.55440865196112e-12	2.89998285005338e-10
Merged-chr15-64179165-1	chr15	64178665	64179665	+	848.0	f0_balb.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118717.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.15234370419458	3.52709708820291	3.27660217737506	3.21903743327049	3.12909417363114	3.45780459189337	-0.249133950296451	0.700263635886717	0.920919335036368
Merged-chr14-70932151-1	chr14	70931651	70932651	+	793.666687	f0_balb.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	42044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	3.90301005409642	3.75604484563426	4.35685867603789	3.80845766924648	3.6718538513994	3.85869206349714	-0.750695218717357	0.175106876602809	0.554840197075627
Merged-chr3-148248830-4	chr3	148248344	148249344	+	957.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	705791.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.93184380587358	3.0183552932834	3.08354507755669	2.78617960249739	2.68225742028006	2.98363254883999	-0.971527069870806	0.175758997769469	0.555774586970482
Merged-chr11-120632726-4	chr11	120632281	120633281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	CpG	766.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	8.93962221797508	8.76741859491717	8.50346732027294	8.70163751995935	8.71208198885485	8.59027414603519	-0.115554144012908	0.598755956496255	0.880808927175713
Merged-chr1-191093427-2	chr1	191092927	191093927	+	679.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4987.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.19584784693138	6.45289615210363	6.24897601435793	6.42792224306953	6.50150412381904	6.24673609703887	0.158479989758345	0.5736348969865	0.870251558775855
Merged-chr15-77832211-4	chr15	77831703	77832703	+	815.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9972.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	4.43601757922297	4.57026380314853	4.60636725467111	4.30223180078729	4.31321711474689	4.38494751381967	-0.529147048549767	0.222999067303735	0.617835308211147
Merged-chr11-83533425-4	chr11	83532924	83533924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2906.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	6.4448866930546	6.08912493986793	5.79108245535111	6.21900894462388	6.31101680156441	5.85420020937628	0.00841292733206059	0.98016535992671	0.995483481682754
Merged-chr11-97662430-4	chr11	97661893	97662893	+	683.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1019.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	5.89385312424427	5.91716386093038	5.83088026708283	6.3346527939064	6.1028911076524	6.10669890456649	0.520192189408803	0.0756228920176635	0.36207086708129
Merged-chr16-14365707-4	chr16	14365215	14366215	+	930.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	4157.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.97834519931445	3.67349267208756	4.20429954030284	3.92498743116508	4.09279873143608	4.18501657558789	0.320918235994429	0.543137129793426	0.857493820124684
Merged-chr17-31074389-1	chr17	31073889	31074889	+	664.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16695.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	8.24539436139399	8.2534994478659	8.23418331220306	8.13003869675781	8.37357142565399	7.63037427209802	-0.214382693675078	0.412857757931101	0.784692850954362
Merged-chr7-98671636-4	chr7	98671118	98672118	+	704.270874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15049.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	6.18668290607741	6.17198836667715	6.43287878377274	5.72017228813019	5.54297193055711	6.26142557002862	-0.689972506980337	0.0439091639149141	0.263607049858021
Merged-chr10-111161497-3	chr10	111161015	111162015	+	764.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3287.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.39364158045614	3.30465024991179	3.46842434903302	3.28114893457878	3.0008863409445	3.14554410334989	-1.01720390739737	0.113129212429565	0.449362970586178
Merged-chr8-47715536-2	chr8	47715036	47716036	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-1605.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	3.70086708592413	3.53226299514448	3.82092629058486	3.7575482094079	3.48183424320417	3.68986793131617	-0.13940853464012	0.804066316134126	0.953557286986578
Merged-chr16-4910117-2	chr16	4909617	4910617	+	814.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	24017.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	3.98098325755581	4.05544958477556	4.61441217515448	4.26212444739115	4.13599465238307	4.28774107493042	-0.0251718684376944	0.960593543458781	0.990386809359123
Merged-chr19-44146431-4	chr19	44145937	44146937	+	971.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028607)	promoter-TSS (NM_028607)	9.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	4.93960770683901	4.79077233534174	5.05607528175953	4.93009037247473	4.52942711164054	4.41031951464018	-0.640389391954991	0.137510677689835	0.495624554674513
Merged-chr16-77083124-3	chr16	77082617	77083617	+	773.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013918, intron 16 of 23)	RLTR11A2|LTR|ERVK	69048.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	4.73746573503912	4.97563334452166	5.39391699541031	5.18523825080132	5.11448699181906	5.86184474211014	0.738851855190638	0.0930445314208193	0.406374548333771
Merged-chr1-125467665-2	chr1	125467165	125468165	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-31938.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.91839576166285	6.23334738061229	6.02673495145279	6.45360016552842	6.85217503516787	6.63372787070051	0.969718072482589	0.000987384848783155	0.0178300997463221
Merged-chr9-13774900-4	chr9	13774403	13775403	+	952.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_024025, intron 1 of 15)	RodERV21-int|LTR|ERV1	25722.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	3.15462926493653	3.43234620431775	3.50479704194498	3.22466334020559	2.88814777318779	3.62380478067988	-0.35160095425583	0.62349985269284	0.891427938597819
Merged-chr10-95530924-4	chr10	95530400	95531400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080560, intron 1 of 3)	MTD|LTR|ERVL-MaLR	15738.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	6.74268662048706	6.3454637715524	6.45820987404266	6.70305259444187	6.99840984152542	6.7087023085155	0.454439265709913	0.107088436056122	0.436731001427041
Merged-chr15-40047998-4	chr15	40047525	40048525	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155348, intron 1 of 2)	intron (NR_155348, intron 1 of 2)	2837.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	3.21820969971442	3.40971116632923	3.24478728453328	3.27146336460924	3.17651769737987	3.19946502709834	-0.3331637412727	0.593207780680223	0.878425958157711
Merged-chr13-45965232-5	chr13	45964742	45965742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009124)	promoter-TSS (NM_009124)	-251.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	8.32504547478398	8.07168564621538	7.88424463074154	7.93526517311813	8.19244534498111	7.89125919272777	-0.131912424112829	0.584159547679735	0.874520926995472
Merged-chr4-117190863-3	chr4	117190404	117191404	+	805.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.0852309944874	6.15433836705087	6.04352912830031	5.21502003334604	5.11946637759221	5.34471758833878	-1.64182006017124	2.82088548388542e-07	1.77147350447651e-05
Merged-chr11-54626263-4	chr11	54625667	54626667	+	849.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 10 of 28)	intron (NM_001252494, intron 10 of 28)	30021.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.75393388466654	7.05295388051996	6.42538788805353	6.76077573286958	6.99693883243647	6.92033750445589	0.178389056188369	0.53647857610014	0.854030292527893
Merged-chr19-8837484-4	chr19	8836966	8837966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136064)	promoter-TSS (NM_001136064)	-1.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	7.11194581895441	7.22345614215461	6.90755587181014	6.92249714048864	7.06142248602964	6.86188756059659	-0.209605220026999	0.404897931481927	0.779791650050306
Merged-chr17-56763572-4	chr17	56763077	56764077	+	981.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1174.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	4.25718537200645	4.33988790082723	4.55677229131605	4.78679446630284	4.76125001112555	4.92079559729652	1.06848058672322	0.011306144236728	0.109709813370223
Merged-chr14-14800074-4	chr14	14799566	14800566	+	955.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20749.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.70992102197634	5.9451980494632	6.07462957654374	5.84411850458732	5.39950777723346	6.19415622978152	-0.1295182184462	0.722165823614215	0.928718955384557
Merged-chr19-4123255-4	chr19	4122757	4123757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016666, intron 1 of 6)	L1MB2|LINE|L1	-1682.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	7.25577235263935	7.01512778234315	6.98554392207351	7.43612708659999	7.72621536997616	7.17822448980095	0.566889185764257	0.0337453474881411	0.224594694752299
Merged-chr6-137754591-4	chr6	137754106	137755106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172733)	promoter-TSS (NM_172733)	29.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	5.95428219164961	6.2213346907982	5.91706649236325	6.03777819719098	5.96713458343777	5.90466298850461	-0.1259059169313	0.675054117935718	0.911995407960456
Merged-chr19-41932751-4	chr19	41932246	41933246	+	957.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023740)	promoter-TSS (NM_023740)	568.0	NM_001164561	66583.0	Mm.289086	NM_025644	ENSMUSG00000034321	Exosc1	2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561	exosome component 1	protein-coding	5.89696665858627	6.11502832489482	5.91039945245707	6.16397647193596	5.74528545354159	6.08622416826571	0.0359698713715798	0.909037988201753	0.979384717565381
Merged-chr17-57340203-2	chr17	57339703	57340703	+	925.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-18483.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.05542569881371	5.03399830305104	5.45650559776115	5.38913074252029	5.21646699018408	5.83633798483779	0.611487498131652	0.118936032084704	0.461021248053436
Merged-chr17-65766086-4	chr17	65765588	65766588	+	951.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6664.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	5.20991114344504	5.01789147356616	5.11100844896876	6.05746306911775	6.10818951991631	5.86546839807088	1.70384532615822	2.38427500043481e-07	1.52961260012474e-05
Merged-chr7-73594222-2	chr7	73593722	73594722	+	850.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35827.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.88366171758955	5.72946007218214	5.89548155619403	5.86264547800282	6.11509052263285	5.93287092059385	0.259151501029308	0.393237490268056	0.771515439837752
Merged-chr10-58255437-4	chr10	58254929	58255929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-97.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	5.89662364021333	6.24278527878268	5.75612613094504	5.89824969944987	5.98985999053919	6.12869263515146	0.0190291833572828	0.952294003293629	0.989068549972429
Merged-chr13-67755156-4	chr13	67754639	67755639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001130)	promoter-TSS (NM_001001130)	-5.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	6.3087989249016	5.82353933381247	6.18909451739914	6.52967466456388	6.68677537534289	6.29141745007339	0.660000226244274	0.0324057856034068	0.218794272029234
Merged-chr15-95827674-3	chr15	95827178	95828178	+	861.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155276, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	2394.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.01855652567566	7.11427840898033	6.79547240222982	7.36505100514101	7.48191402717215	6.88383951835204	0.44074347429348	0.115291755898478	0.453364670359193
Merged-chr13-74261659-2	chr13	74261159	74262159	+	609.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	30672.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	5.34274358478631	5.11035887350626	5.66705404368578	4.80166844449234	5.16053787990959	5.17425744112878	-0.662043427856766	0.0939804334304952	0.408372442680278
Merged-chr9-75433711-2	chr9	75433211	75434211	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-7813.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	6.77486391892197	6.65890683821736	6.49307763807546	6.63746592354187	7.02222441623662	6.60678995041902	0.200545243389461	0.474755513856391	0.821664499521211
Merged-chr7-101837899-4	chr7	101837372	101838372	+	987.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-48.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	6.160408759258	6.10280024757973	6.51509433882189	6.43202380984054	6.41150478610237	6.34113783207767	0.227840973576713	0.42790112220148	0.79474992357457
Merged-chr19-11916068-2	chr19	11915568	11916568	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	3669.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	4.49660816125728	4.44559298952619	4.55789249091103	4.64991162669177	4.46740865657405	4.62406411598005	0.198921461766831	0.636480270919346	0.897160081657505
Merged-chr10-60273579-4	chr10	60273080	60274080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4048.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.93649129414222	6.51085244532165	7.00143566594307	6.6642009202584	6.86397254399385	6.8260102728529	-0.0613140220762925	0.82586725187104	0.958980508812612
Merged-chr2-133430783-4	chr2	133430289	133431289	+	833.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-121370.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.96354668330292	4.28316652558618	4.15374708432145	4.09609785465739	3.84890316138241	4.03344836485714	-0.435842564166794	0.383715414683917	0.764985318183371
Merged-chr18-39140732-4	chr18	39140234	39141234	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	147589.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.41635909217677	6.66043873906023	6.70872120497207	6.3615095762285	6.53728467509934	6.75220410752365	-0.0693426258121541	0.803977494580512	0.953557286986578
Merged-chr17-67329044-2	chr17	67328544	67329544	+	921.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	25415.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.96103206243046	7.26255533370527	7.00309710811249	7.33899060651687	7.40524572080022	6.99096376323438	0.269288850038847	0.304127677484965	0.700676242432783
Merged-chr10-82795508-4	chr10	82795006	82796006	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16617.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	3.91236184741437	3.88959185790241	3.77952319469339	3.45424938548156	3.4151095993357	3.58530065199675	-1.35377365755973	0.0153868731004906	0.135053896302281
Merged-chr8-22935793-4	chr8	22935275	22936275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081149, exon 17 of 18)	exon (NM_001081149, exon 17 of 18)	-39061.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.24643913800388	4.51105999868579	4.28680086777356	4.34179114534071	3.98617139706367	4.168673568121	-0.510357108467944	0.285823827383639	0.68325755656567
Merged-chr1-170998419-4	chr1	170997904	170998904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20522.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	8.19595269309844	8.43282917996349	7.98746942930587	8.37423733041418	8.81692357244523	8.3154039539669	0.425118534822989	0.0959026430889321	0.412887003991507
Merged-chr1-136639352-2	chr1	136638852	136639852	+	931.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14451.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.476676064374	4.31154290019852	4.40765215223542	4.36624576783886	4.46924337136198	4.59701730773606	0.196401466287764	0.652316269603273	0.902943650908013
Merged-chr4-120845224-1	chr4	120844724	120845724	+	575.0	f0_c57.idr	Intergenic	Intergenic	-9575.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	2.4764655531813	2.58363696073263	2.59036412565457	2.20354744747152	2.39151729457947	2.5402722441486	-1.04473109859631	0.225404710418783	1
Merged-chr9-122956438-2	chr9	122955938	122956938	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010620, intron 1 of 34)	B1_Mus2|SINE|Alu	5357.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	2.60730682206505	2.63218616986734	2.57500189228776	2.80927855470372	2.60950560252112	2.77613185124589	0.68592814467993	0.36214336208165	1
Merged-chr12-69458549-4	chr12	69458056	69459056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16994.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.80887151588691	6.8171067059308	6.58325867336182	6.79064823881107	6.93383097603602	6.53409891524361	0.0422303279449046	0.875838409383751	0.971136321106511
Merged-chr9-110458060-2	chr9	110457560	110458560	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	18634.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	4.99667582137603	5.11475742961823	5.15739105124887	4.83582223154244	4.8263204493479	5.09140872881725	-0.377482766213524	0.316886986167174	0.710824527206257
Merged-chr19-6331220-5	chr19	6330675	6331675	+	757.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3804.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	3.20592734124372	3.09583299997613	2.94872974558075	3.18839849274628	3.36580495525398	3.37982206877078	0.924025489782542	0.16052758338724	0.533208683746259
Merged-chr9-36768646-4	chr9	36768128	36769128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1050.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	8.50756437789556	9.2714998525796	8.57047860627876	8.86465035046323	9.2688633483752	8.57693696753175	0.138556010935591	0.646662368152046	0.901026195271032
Merged-chr7-111478299-1	chr7	111477799	111478799	+	623.5	f0_balb.idr	intron (NM_001360903, intron 10 of 10)	intron (NM_001360903, intron 10 of 10)	301678.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	4.05773310738276	4.41122854585003	4.51874838453474	4.27978172675377	4.28310045139662	4.24654485719302	-0.177116619409808	0.707731724379728	0.923528816860664
Merged-chr6-43666219-4	chr6	43665706	43666706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311111)	promoter-TSS (NM_001311111)	72.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	6.77221965631765	6.86977257155672	6.70101200480828	6.57741597842052	6.79437062980682	6.53840692864157	-0.213618016427349	0.413298253102693	0.784902566398158
Merged-chr16-32396402-4	chr16	32395899	32396899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	5.47667065648211	5.56428345269461	5.51344196620482	5.36994747915056	5.53052228171223	5.51896836189031	-0.0825659778894779	0.800344279464244	0.952473566258486
Merged-chr15-58889453-4	chr15	58888991	58889991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175151)	TTS (NM_175151)	262.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	8.50891171609574	8.62826097488498	8.15647329739923	8.47407230214137	8.4697591849935	8.30481120848554	-0.0448345934031747	0.845399548315474	0.963773214686551
Merged-chr15-25635266-2	chr15	25634766	25635766	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	(TG)n|Simple_repeat|Simple_repeat	12716.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.39297339862913	3.20142311897479	3.10163368219613	3.42181038973785	3.34345081111424	3.35537950729311	0.518132954762658	0.408232214327109	0.781982251625038
Merged-chr10-99459460-2	chr10	99458960	99459960	+	808.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-149711.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.54316036651942	6.55865905669484	6.21348786507309	6.07097959336976	5.99091464706058	5.92677580058788	-0.766452067392295	0.00812117100745026	0.0869686482867338
Merged-chr3-51373191-3	chr3	51372709	51373709	+	794.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	23338.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	5.46506664559097	5.77492733152999	5.81026816486661	6.02152485470944	5.86115588372151	5.7170365148	0.341116305850166	0.291653464798941	0.689194067334723
Merged-chr14-31415367-2	chr14	31414867	31415867	+	906.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2310.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.98485570065038	6.13177981741278	6.06691137823384	6.24637941231466	6.05193733858358	6.27276074818057	0.211318194909362	0.462915234020499	0.815511746112333
Merged-chr7-16056710-4	chr7	16056274	16057274	+	931.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-15071.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	4.64950645447677	4.63388418795534	4.86965698455341	5.10202317866535	5.27785678512106	4.60781472452737	0.719055782128152	0.0915610827576029	0.402843395184502
Merged-chr11-116625680-4	chr11	116625182	116626182	+	857.154785	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1337.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	4.77339875798893	4.6407048209849	4.78452779116496	5.14996526526138	5.45562395971784	4.63817297736026	0.883864378757197	0.0412815076751925	0.253782910279824
Merged-chr11-119227001-2	chr11	119226501	119227501	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347625, intron 1 of 11)	RSINE1|SINE|B4	1498.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	4.95819487495732	4.56527437516076	4.49578931496335	4.27821476883868	4.31800231078531	4.43216708686403	-0.887965330060487	0.0483274283819265	0.27880667411796
Merged-chr14-120401271-2	chr14	120400771	120401771	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-77190.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	2.52551433327658	2.38100888580693	2.79954492255632	2.60129727316106	2.4110272614282	2.69544005368896	-0.0239101775381624	0.976623805659092	1
Merged-chr2-45106629-6	chr2	45106165	45107165	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	3612.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.78798084125431	6.75887726222033	6.96203429497026	7.09595407711855	7.1823677842481	7.05988815737784	0.435549361230368	0.0735742335366795	0.356446277969143
Merged-chr7-7121498-4	chr7	7120993	7121993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172738)	promoter-TSS (NM_172738)	-17.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	6.1106264351176	6.42539771346459	6.47511543574382	6.32958643201944	6.23311485917978	6.05373153362703	-0.209272071079399	0.476492127369805	0.82257619929543
Merged-chr10-78069746-4	chr10	78069246	78070246	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015790, intron 1 of 6)	CpG	378.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	4.47866945382234	4.5236840632207	4.29925678401508	4.37893757594384	4.40880192726644	4.36775958756716	-0.148892390865555	0.734059062391385	0.932325051544019
Merged-chr11-4660030-4	chr11	4659542	4660542	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22249.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	3.90893895135545	4.2465868884867	4.16348347427242	4.11577997774367	4.28021606719235	4.13829449832733	0.198556320048753	0.683454614880264	0.915437828512898
Merged-chr2-156177361-2	chr2	156176862	156177862	+	952.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001291114, exon 3 of 17)	exon (NM_001291114, exon 3 of 17)	2218.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	4.4735110626038	4.46606263432287	4.15505428552802	4.14094403478946	4.57075819984575	4.22523727560512	-0.110697602198639	0.819190891733079	0.957209935971094
Merged-chr18-78808088-4	chr18	78807597	78808597	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053099, intron 4 of 5)	MIRb|SINE|MIR	-211147.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	4.17474434444002	4.09616639622862	4.4738124852816	4.14169093322878	4.38332882555658	4.45999082728801	0.229131584381176	0.628955646904529	0.89397074295706
Merged-chr19-47225685-2	chr19	47225185	47226185	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021360, intron 1 of 5)	PB1D10|SINE|Alu	-3158.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.96829402877628	4.30153566460702	4.17067049373892	4.44795963265758	4.24570818726905	4.61687579184446	0.748843584738866	0.11796154856503	0.458660959485934
Merged-chr17-57361698-2	chr17	57361198	57362198	+	608.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355723, exon 2 of 22)	exon (NM_001355723, exon 2 of 22)	3012.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.06722810460425	3.94336858750588	4.38396689041803	4.08824506169005	4.02050636919702	4.41000462493508	0.112205068589727	0.824283000010119	0.958538023027357
Merged-chr15-97487623-4	chr15	97487134	97488134	+	796.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218188.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.3143216185798	4.49877641031664	4.72607117418881	4.23980719577944	4.19107472934827	4.71962722640897	-0.311137794933099	0.515673373576039	0.843867879491712
Merged-chr17-71268145-2	chr17	71267646	71268646	+	972.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	42865.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.09841821378793	3.32037046749351	3.38415445023642	2.87456571937748	2.81094061992521	3.06859893366662	-1.66589494206516	0.017891172240615	0.150118668192637
Merged-chr2-90461686-2	chr2	90461186	90462186	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 7 of 23)	B1_Mur1|SINE|Alu	17488.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.77228433121128	2.86463485621444	3.2586652620896	2.69219913790968	2.88804940962841	3.11774216427351	-0.325093451532376	0.667031898317473	0.908475303551909
Merged-chr10-84646820-4	chr10	84646325	84647325	+	872.142822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027423, exon 10 of 28)	exon (NM_027423, exon 10 of 28)	24388.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	5.13597268966844	5.39602658786516	5.66573523967092	5.23058290966772	5.56008099062082	5.33917919916506	-0.0297478605960551	0.935840276655154	0.985953563515988
Merged-chr2-118011033-4	chr2	118010473	118011473	+	822.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	100229.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	3.50498688037555	3.86025382400446	3.44075409313026	3.60884280357289	3.65059478755957	3.88347404530377	0.306793808295802	0.601003377083615	0.881855262262798
Merged-chr15-6707682-4	chr15	6707180	6708180	+	821.908325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-701.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	5.08259625896837	5.20728685271657	5.13346530828536	4.75575630234438	4.67628216910114	4.59282154804472	-1.02598535623551	0.00778232840101591	0.084426594731647
Merged-chr3-138143820-4	chr3	138143319	138144319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163457)	promoter-TSS (NM_001163457)	20.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	8.62757777269078	9.27349574483358	8.66522212154602	8.69391465638213	9.2093448677742	8.75885946262421	0.0221460398943358	0.936596572575745	0.986037792257163
Merged-chr5-137837299-4	chr5	137836782	137837782	+	817.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	4.3888336706159	4.03389536374719	4.19658633083468	4.39844944006714	4.17570210111651	4.35504743812483	0.249644455384035	0.598417945932147	0.880780437003557
Merged-chr15-36649935-4	chr15	36649439	36650439	+	966.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40966.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	4.2330053740268	4.21879726589345	4.4153564059608	4.47741033031743	4.48130689449315	4.48217124145168	0.510140180738514	0.244625410598121	0.64198815440115
Merged-chr17-28738937-2	chr17	28738437	28739437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-30380.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	4.77914058454796	4.78100791951439	4.59726323908397	4.52494892107359	4.39075143935793	4.53851092574437	-0.606246797160301	0.145843233043212	0.509245645617272
Merged-chr11-29647954-4	chr11	29647440	29648440	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44958.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	4.44297309588072	4.72651489645348	4.65454748832541	5.12908549156388	5.50053259849809	4.9629188598081	1.35240465136292	0.00107466245786089	0.0190540195597036
Merged-chr17-83727857-4	chr17	83727358	83728358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	21695.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.9783815037425	5.86094468420322	5.66261674836262	5.77380093464035	5.95547530912031	5.85749283703918	0.0327681632589049	0.915778779331664	0.981200822249461
Merged-chr9-121574611-4	chr9	121574117	121575117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12403.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	4.09891208759833	4.6052784236991	4.9035261011545	4.38272317181773	4.43915051135885	4.69150626731409	-0.155881809020375	0.752444293406933	0.938249434524264
Merged-chr10-128493054-4	chr10	128492596	128493596	+	989.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317220)	promoter-TSS (NM_001317220)	-87.0	NM_001317219	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	7.60522193733256	7.72454482306161	7.537146864996	7.7083929779377	7.97184759147433	7.43613099870977	0.154650666342867	0.5364386140938	0.853999353349474
Merged-chr10-40057773-4	chr10	40057227	40058227	+	819.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-32459.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	3.45556564894986	3.24250230006259	3.18073268024734	3.39857515583059	3.33563973558163	3.31294416664914	0.184670072315905	0.765093230317669	0.942123616786297
Merged-chr15-27883058-4	chr15	27882566	27883566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	142782.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.46977928521756	5.50458433198169	5.09117950787884	4.92829396098463	5.17830779666085	4.88944180027099	-0.738579005290886	0.0534760331217591	0.296510881562352
Merged-chr13-100201904-4	chr13	100201430	100202430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	192.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	7.20911428846105	6.7693010269676	6.78956080578334	7.61475951736286	7.41669176473679	7.09740868871191	0.680108637795031	0.0160506912401696	0.139148355564912
Merged-chr14-52016671-2	chr14	52016171	52017171	+	592.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033805)	promoter-TSS (NM_001033805)	-194.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	2.85151962166195	3.05018790626064	3.14695228535103	2.73611574023388	2.81989387335758	3.32282296738972	-0.172902231500952	0.81787848109369	0.956835450074313
Merged-chr19-56680780-2	chr19	56680280	56681280	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-41592.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.01911606943839	2.84531089664764	2.73478055592906	3.09922771335288	3.12386789340076	3.34916346572507	1.44484432789114	0.0461330169611118	0.271646456393757
Merged-chr7-81828952-1	chr7	81828452	81829452	+	841.0	f0_balb.idr	intron (NM_146193, intron 1 of 7)	CpG	479.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	7.82324982219001	7.5185217307962	7.57956486951037	7.65636732275687	7.41550279317157	7.70938434761584	-0.0799203223922183	0.739605399461804	0.934245371298156
Merged-chr7-106760661-2	chr7	106760161	106761161	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx|LINE|L1	-7275.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	3.98323390882635	3.88688103190813	4.10236121370735	4.1816494989183	4.1967832223307	3.97638287480884	0.411647002117371	0.400814841947291	0.777027234158915
Merged-chr2-129604299-4	chr2	129603793	129604793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8831.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.69304455436006	5.84509537767065	5.80901970634528	6.02555437090094	6.11621573641222	5.7664069487083	0.363922488727629	0.238284986267417	0.634951642748382
Merged-chr8-80335898-3	chr8	80335410	80336410	+	890.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-158135.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	4.17319910971194	3.98062431488423	4.39019815016671	3.86892701139274	3.77494092993319	4.41689802828696	-0.409543017145771	0.45228115542436	0.809355464332877
Merged-chr7-35098970-4	chr7	35098485	35099485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20308.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.14788874320787	4.9222538023361	5.46902546959728	4.81159074952864	4.93441290705672	5.09133228068913	-0.510848857495691	0.198238431492276	0.58648010923278
Merged-chr2-35680514-3	chr2	35680021	35681021	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-11473.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	3.45842969419055	3.29801023126248	3.19526419001107	3.09807978358297	2.94988812088948	3.14917524663437	-1.14647457186698	0.0811845593331786	0.376985591438982
Merged-chr13-60897522-4	chr13	60897009	60898009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145801)	promoter-TSS (NM_001145801)	-62.0	NM_001145801	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	6.55559724623323	6.86519628642918	6.64267682392448	6.74572784523396	6.93456111719002	6.59908527308304	0.122576460683255	0.651978413634481	0.902896807825606
Merged-chr10-12921826-2	chr10	12921326	12922326	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_038028, intron 1 of 2)	intron (NR_038028, intron 1 of 2)	1301.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	4.1093642869255	3.84410691378855	3.94100409592003	4.43029371857022	4.19891622670658	4.11305359760753	0.812900595276974	0.100499554526806	0.422832933865928
Merged-chr14-32781665-4	chr14	32781150	32782150	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4313.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	4.00429049762109	3.83666715300568	4.07287349023399	4.21109412822142	4.17065690977204	3.78045237779358	0.312067420095528	0.547049817772408	0.859171786281739
Merged-chr9-116079346-4	chr9	116078856	116079856	+	843.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96007.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.72985076170497	3.71948652778778	3.49243294558313	3.38291752253862	3.53063520692861	3.56395172672371	-0.581986157737376	0.311179433279475	0.706465219571547
Merged-chr15-78610422-3	chr15	78609867	78610867	+	780.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 7 of 12)	intron (NM_028195, intron 7 of 12)	13320.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.38993358070268	4.45240538256945	4.3089656111987	4.11815161383927	4.38778055390686	4.90666175013359	0.291944140124533	0.554701404150878	0.86290101194412
Merged-chr7-67445564-4	chr7	67445043	67446043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72685.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	7.23226350614996	7.20171709270738	7.43398238077931	7.25358589564109	7.58806880690208	7.42940900157452	0.218081856803676	0.370906289958578	0.755116600398165
Merged-chr14-59201982-4	chr14	59201478	59202478	+	797.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027764, intron 1 of 11)	intron (NM_027764, intron 1 of 11)	750.0	NM_001360610	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	5.76342273666233	6.18510119750852	5.2500848045908	5.72615214328676	5.51221738244572	5.57861789020947	-0.355486527687594	0.357673211124028	0.744246280500086
Merged-chr10-16088972-2	chr10	16088472	16089472	+	827.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	297195.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	3.19998192165997	3.17022583383667	3.16336771213617	3.06898936801407	3.19161602710831	3.11764684283585	-0.209763924818753	0.74224811349255	0.935165347690577
Merged-chr13-111802491-2	chr13	111801991	111802991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	6502.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.14378509234946	3.17616312188916	3.25581009988654	3.26789270365099	2.94786864154752	3.38125739945995	0.0587592882358824	0.929115185766328	0.983987942057929
Merged-chr2-25263221-3	chr2	25262735	25263735	+	848.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	637.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	4.56711520860065	4.45739801334117	4.35720235664767	4.43271761809355	4.69882251232363	4.47051744522252	0.196927975787987	0.651615739504539	0.902867999699131
Merged-chr16-32010547-3	chr16	32010061	32011061	+	715.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7274.0	NM_177103	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	3.12125724931196	3.00995357345189	3.2427518577244	2.93766527210165	2.86784992195749	3.09098455151496	-0.74266005723966	0.272925928566433	0.670097983598577
Merged-chr7-110250896-4	chr7	110250407	110251407	+	889.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009302, intron 2 of 11)	L1MB8|LINE|L1	29204.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	5.23530652990984	5.11106198425981	5.48381416094252	5.10313976747845	4.7774075386594	5.38135485656049	-0.372669351709306	0.349154389977349	0.737203138400752
Merged-chr8-86883660-2	chr8	86883160	86884160	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	B2_Mm2|SINE|B2	1598.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.47584756864701	3.41084335148574	3.26192791708019	3.30301695677423	3.2445815503576	3.39096504388486	-0.321386836142603	0.596484460166231	0.879926938418789
Merged-chr8-125699771-4	chr8	125699272	125700272	+	887.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR41C|LTR|ERV1	29954.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	3.11675965268738	3.03559991425743	3.16064447634195	3.21415441426585	2.94911394242051	2.99437376964327	-0.204828493624272	0.758262126603296	0.940104678746179
Merged-chr4-137047783-3	chr4	137047275	137048275	+	765.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198248, intron 1 of 18)	intron (NM_198248, intron 1 of 18)	920.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	4.29074423576567	4.3082430847241	4.31592155926116	4.56892695107388	4.4701132824491	4.24384030662887	0.356216061993594	0.42556737174774	0.793186380294816
Merged-chr15-25533241-3	chr15	25532698	25533698	+	942.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89352.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.47734076354895	3.69860372647598	3.45975519410218	3.20749332469526	3.47223042833511	3.41900843399131	-0.670017479016509	0.270457578400452	0.667405147944625
Merged-chr2-156311008-3	chr2	156310490	156311490	+	820.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_020255)	TTS (NM_020255)	-1483.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	5.75955174714456	5.48855555055918	5.78759849965708	6.98177521154749	6.96748216128691	6.51274245077207	1.94624277122405	1.46385053996379e-10	1.89725974656242e-08
Merged-chr2-73509779-4	chr2	73509264	73510264	+	834.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	19723.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.4439742285936	5.57002994708231	5.49015591343183	5.59765752439639	5.2254304108641	5.05641105217909	-0.35652686963786	0.324577245114934	0.717544999689449
Merged-chr10-60348129-4	chr10	60347632	60348632	+	895.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	1281.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.86417799067683	6.59795117689647	6.89124027887368	6.89383816315593	6.91623532297401	6.55048610950383	0.0317447456711939	0.907144292972125	0.978868492078838
Merged-chr2-181591547-1	chr2	181591047	181592047	+	542.0	f1_balb.idr	intron (NM_001164597, intron 1 of 16)	intron (NM_001164597, intron 1 of 16)	914.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	2.85129432764804	2.8905529752655	2.91807703952155	2.73553892230086	2.66416630314044	3.04735401960383	-0.336828843800716	0.644310206123577	0.900160672024687
Merged-chr7-125582906-3	chr7	125582388	125583388	+	701.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20541.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.9521207694431	3.89823188748483	3.86793141216928	4.10239808952199	3.55057351468	4.2163123959033	0.223271264735988	0.691761558417873	0.918492623872381
Merged-chr9-86478935-2	chr9	86478435	86479435	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	11781.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	6.93815934795892	6.4308230338512	6.51042040780673	6.57770966555783	6.77911825003971	6.67303771195518	0.0460688672950246	0.873091425011172	0.970371929331986
Merged-chr16-52082061-4	chr16	52081590	52082590	+	933.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	50541.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	4.62868129757439	4.66679843634734	4.33090820055952	4.40404890649608	4.81809563252742	4.77974469733847	0.292406638832757	0.51144534100217	0.841400291314575
Merged-chr7-141469146-2	chr7	141468646	141469646	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111050, intron 1 of 6)	intron (NM_001111050, intron 1 of 6)	357.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	3.84135008186119	3.43528808355745	4.00267502030409	3.61892246357896	3.84519848732767	3.62702116974194	-0.226771015219067	0.699836391687252	0.920753377048759
Merged-chr14-8081434-3	chr14	8080942	8081942	+	802.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025938, intron 1 of 5)	RMER10A|LTR|ERVL	1129.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	4.83808625526786	5.28937455778686	4.90996338927999	5.05561551186665	4.71532491791215	4.73941185591998	-0.411968546568911	0.31961308615354	0.713540438213725
Merged-chr7-126378052-4	chr7	126377549	126378549	+	864.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023712)	promoter-TSS (NM_023712)	-115.0	NR_045537	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	5.55628154134063	5.44048306253037	5.97907277924154	5.72529656330955	5.83878905493181	5.68164022854997	0.164593552787188	0.627654438968733	0.893330206932885
Merged-chr8-41394600-2	chr8	41394115	41395115	+	948.5	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-19918.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	3.32060634746029	2.98133087184283	3.43893765636792	3.07824145241921	3.18136717550711	2.99934793168721	-0.694655378299286	0.311187258708324	0.706465219571547
Merged-chr10-126928344-3	chr10	126927844	126928844	+	986.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26973.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	4.50694365537563	5.13651013445572	4.74180320607441	3.93560799049712	3.65889150675286	4.12058369462354	-2.55917361596163	1.39895827561605e-06	7.27983240759604e-05
Merged-chr19-29430680-4	chr19	29430146	29431146	+	920.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	19727.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.28874479798052	6.29999145654507	6.54072965933485	6.57714170084324	6.46489143718422	6.40400060931304	0.184625043183047	0.498240399948985	0.833856267944725
Merged-chr1-39944532-3	chr1	39944035	39945035	+	820.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	43622.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	3.40885395383637	3.48868395227181	3.32892225350768	3.35193798209566	3.12483040613914	3.45596417142417	-0.406109119323781	0.511482869751338	0.84141212364859
Merged-chr16-94328799-2	chr16	94328299	94329299	+	663.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133229, intron 1 of 3)	intron (NM_133229, intron 1 of 3)	377.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	5.68966566939167	5.8351897790255	5.72508072622569	5.6914225137792	5.97559588554179	5.29943434042579	-0.0887348084504928	0.801551229727383	0.952995299515894
Merged-chr9-108340546-4	chr9	108340048	108341048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001329528)	TTS (NM_001329528)	1468.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	8.32005131099741	8.2458589718168	8.06069339003437	8.48411687370337	8.69543515138056	8.40389176479347	0.44685391392348	0.0415821591472227	0.255041194181252
Merged-chr4-95084152-3	chr4	95083654	95084654	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31932.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.99020070593141	3.99247898585795	4.49263436687033	3.6751604265466	3.32602716814816	3.79190828768828	-1.83755714121919	0.00206397427760629	0.0317095959547754
Merged-chr4-136125724-4	chr4	136125232	136126232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18090.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	6.30573113814205	6.22409400254117	6.32404602733371	6.69195407721428	6.90592493187238	6.40408235664553	0.666750902458149	0.0187080495617362	0.154737513711028
Merged-chr18-68300326-4	chr18	68299846	68300846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026440)	promoter-TSS (NM_026440)	-9.0	NM_026440	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	8.52293677951393	8.58683374684056	8.29599146179142	8.55105314855857	8.72861661714925	8.16391093241886	0.0441934535181728	0.856174621770063	0.966380145257578
Merged-chr16-21204562-4	chr16	21204060	21205060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010143)	promoter-TSS (NM_010143)	-235.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	4.17046185420211	4.38505508351636	4.65972901298446	4.2810046216338	4.55962528053183	4.36314895867395	0.00624872847590909	0.989349174056574	0.997597007948949
Merged-chr12-32730931-3	chr12	32730437	32731437	+	624.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-89398.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.05419769546139	2.86444376657258	2.76331722879668	2.86182570880835	2.83360648795054	2.96187496520873	-0.0991467396432973	0.889189268162464	0.974207858658472
Merged-chr2-11428970-2	chr2	11428470	11429470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30470.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	7.31924204208187	7.2682388610723	6.89752681474214	6.85879805402045	6.9551643424982	6.63072247909852	-0.536871760602829	0.0458096983353689	0.270414713002574
Merged-chr17-28801679-4	chr17	28801185	28802185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 1 of 12)	CpG	559.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	6.37058681139073	6.10310836822925	6.18207456286348	6.62926621844909	5.85169070460975	6.30370729902603	0.121812598597564	0.717565570755845	0.927113669510706
Merged-chr13-37526368-4	chr13	37525853	37526853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	181008.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	5.72987349228307	5.65830822193364	5.40540421065653	5.75866763690389	5.41222160685341	5.46896029878601	-0.111313733562859	0.744195150507785	0.935908101256887
Merged-chr11-102247329-2	chr11	102246829	102247829	+	626.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1553.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	3.31669306443275	3.25960252267927	3.34498833061607	3.39033605575102	3.23940714299112	3.30339631744328	0.0201436719893829	0.973459016736251	0.994039095662068
Merged-chr9-70260462-4	chr9	70259955	70260955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	53105.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	5.63348590445318	5.71457841438673	5.39848189894237	4.86562214036997	4.9421861681107	4.77898956463114	-1.47832871346076	5.64868963053749e-05	0.00174619576316732
Merged-chr4-155219968-3	chr4	155219454	155220454	+	798.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	2581.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.0799806665106	5.02680543834675	4.91474618208609	4.97079736115718	4.85804879275094	4.74514071962191	-0.324506426543118	0.394589388861463	0.772514857254462
Merged-chr5-114698530-1	chr5	114698030	114699030	+	544.0	f1_balb.idr	Intergenic	Intergenic	-7595.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	6.92138585267123	6.48165429274136	6.73593075840059	6.45334289327792	6.13584557104913	6.44547377281607	-0.611182278579078	0.0359711043871702	0.233208789667543
Merged-chr11-118151736-2	chr11	118151236	118152236	+	808.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22517.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.13320422589135	2.99229927262691	2.99901391979068	2.97993416063127	3.08654320143981	3.40573941769094	0.517718771568126	0.444887433572701	0.804541708256239
Merged-chr19-5845465-6	chr19	5844971	5845971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_003513)	promoter-TSS (NR_003513)	7.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	8.4827092353036	8.36376713587051	8.16823314970061	8.42680559405758	8.78486587288007	8.14670575068606	0.194693371389515	0.443519112771816	0.80383358753004
Merged-chr1-174032855-2	chr1	174032355	174033355	+	796.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3A|LINE|L1	-1100.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	3.01042015207633	2.89848565887381	3.09509274248947	2.74233032402841	2.54170612607933	2.87783068431306	-1.47820550684706	0.0525959186097946	0.293383468236495
Merged-chr6-116142422-4	chr6	116141909	116142909	+	926.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	Lx8|LINE|L1	50965.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.08529498914816	4.97850866230303	4.72538523437578	4.77599757829478	5.10467690441024	4.98567598340189	0.0422320986953613	0.915356702141237	0.980959026698783
Merged-chr15-83171341-4	chr15	83170823	83171823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	885.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	6.69307993299458	6.93192379272654	6.38879787997034	6.57920650066439	6.7569577302163	6.40866715453885	-0.164531446623262	0.575179500577192	0.87094931637326
Merged-chr15-81803073-2	chr15	81802573	81803573	+	995.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155271)	promoter-TSS (NR_155271)	400.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	5.45459330876952	5.87405576858594	5.60248156978125	5.50056222283233	5.54187585557032	5.39951658956924	-0.325990829082583	0.337241040902401	0.727188944229835
Merged-chr12-85526252-4	chr12	85525769	85526769	+	903.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	52379.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.94931887886663	3.63878451366906	3.6536050792291	3.86822486492298	3.41855523483107	3.30821362727672	-0.674832813508835	0.281161995570942	0.679316418491107
Merged-chr6-39232289-2	chr6	39231789	39232789	+	780.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25516.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.04504136452833	6.29796377014095	6.38427879955663	5.93191971295861	6.23494055497629	6.1727666869824	-0.206098615396364	0.490675182005462	0.830143152867115
Merged-chr6-22398593-4	chr6	22398063	22399063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	5.16994931152122	5.41720833280263	5.3470008047964	5.1124164550652	5.19871519082904	5.49551903120193	-0.0917607429124234	0.799101179132533	0.952192623704135
Merged-chr8-120114568-3	chr8	120114076	120115076	+	998.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	CpG	424.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	7.051803073366	6.88300685262058	6.95672743313294	7.23380046318153	6.83147329576569	6.58662046590982	-0.0713239815167208	0.801598380688429	0.952995299515894
Merged-chr1-175692838-4	chr1	175692319	175693319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-187.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	6.0825749667306	6.02662227138641	5.95514881905179	5.95874863087383	5.67664641370227	5.59471900138505	-0.47551212833279	0.125674643657036	0.474301999544486
Merged-chr6-13073182-4	chr6	13072673	13073673	+	938.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027992, intron 3 of 8)	L2|LINE|L2	3414.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	3.59965798643321	3.40551033271087	3.56119518702171	3.54541444605746	3.30988346459368	3.6824826180256	-0.0369191559889189	0.950184232812945	0.988400419899929
Merged-chr10-121459960-1	chr10	121459460	121460460	+	559.0	f1_balb.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16290.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.77578531459869	6.85476937463325	6.54471435309089	6.77851078134198	6.93497047021635	6.53078109728351	0.0471856739105046	0.863348701587931	0.96822816879546
Merged-chr7-89216856-4	chr7	89216352	89217352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	121935.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.89084136125138	6.99270786379094	6.89314232648239	6.79619873524545	6.82041707660993	6.78852261528917	-0.194394604728085	0.424873027293696	0.792848465017231
Merged-chr16-10441516-4	chr16	10441037	10442037	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	L1MB2|LINE|L1	5825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.96463166918287	4.90624669373371	4.9381434863576	4.73128482411591	5.03611777738692	4.89354568219103	-0.0799136192227883	0.836056649322922	0.961926836287561
Merged-chr4-133585055-1	chr4	133584555	133585555	+	690.0	f0_balb.idr	TTS (NM_172876)	TTS (NM_172876)	682.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	5.42101134556546	5.54145245669997	5.06627070223032	5.11065309385275	5.01199044367343	5.02108083224758	-0.658040523852131	0.0758549384710319	0.362556018168626
Merged-chr10-70201045-4	chr10	70200563	70201563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3601.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	5.95650593332813	6.1377522376198	5.87609047818358	6.54613903885256	6.60808610105311	6.34490762412733	0.845408679388858	0.00325001408925803	0.0447666985800164
Merged-chr17-46874268-4	chr17	46873762	46874762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16359.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	3.54284129912715	3.40453965257489	3.10190155781063	3.31107810253033	3.05908267838559	3.41315230026229	-0.409033227108481	0.53841888090922	0.855172143290341
Merged-chr2-90613179-4	chr2	90612671	90613671	+	841.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32524.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.53235892000567	2.72995975368795	2.86498605649772	2.76711714839403	2.59011385954691	2.8194591821176	0.0696384802999178	0.927059581127364	0.983578869536024
Merged-chr5-118647606-4	chr5	118647129	118648129	+	931.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	86910.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.13769341936412	4.01505299228697	4.18634894964417	3.71534692351329	4.20769720366412	4.02230040619169	-0.307597438050065	0.555382577599178	0.86322787018872
Merged-chr15-34096551-3	chr15	34096064	34097064	+	902.3666380000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357925, intron 1 of 10)	intron (NM_001357925, intron 1 of 10)	13845.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	4.11959010065972	4.44691498191021	4.31129318860775	4.37759396609267	4.31808196321467	4.58566336997523	0.320543601313649	0.48574321114561	0.827570845088965
Merged-chr14-31252032-2	chr14	31251532	31252532	+	657.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	543.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	7.76252849685725	7.94933293499679	7.62164375917186	7.76945090589578	8.03991018453897	7.82933313905729	0.141745851735945	0.54436533754364	0.85765692399006
Merged-chr3-81036257-4	chr3	81035806	81036806	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019971)	promoter-TSS (NM_019971)	-110.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.70392244242143	6.73476054441972	6.59713340172916	6.50257239074377	6.57183960666214	6.29869972090962	-0.3369784075505	0.205074217524312	0.595694220420628
Merged-chr10-75765252-4	chr10	75764672	75765672	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-815.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	6.47382019415021	6.41695274447791	6.37237292074573	6.60273062387479	6.64381210785865	6.4700728820002	0.250908279645944	0.339534401402594	0.729313720985741
Merged-chr5-150665710-4	chr5	150665216	150666216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201369)	promoter-TSS (NM_201369)	-104.0	NM_201369	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	6.93680123530715	7.06428297749299	6.75327622335171	7.1737587744509	7.25600344553763	7.12654639769837	0.388827265939618	0.115675400790998	0.454036452144789
Merged-chr13-70935287-2	chr13	70934787	70935787	+	819.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52339.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	3.24328237476845	2.99053308591068	3.20652097768141	3.14032706634235	3.06565853755025	3.16375088554837	-0.122263409675598	0.850941265674824	0.965007006719441
Merged-chr9-78451585-4	chr9	78451070	78452070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026658, intron 3 of 11)	RSINE1|SINE|B4	3360.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	6.13791922848457	6.42358528554034	6.32642919094172	6.22468064280974	6.67899219111942	6.53154838982089	0.322088919837821	0.275103000245084	0.672466816815303
Merged-chr17-78200805-4	chr17	78200270	78201270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015800, exon 1 of 17)	exon (NM_015800, exon 1 of 17)	522.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	6.06570165506567	5.92835179829232	6.17293270567322	5.84977293987781	5.577309784034	6.09025879706891	-0.373565425083478	0.245301860335084	0.642393755173178
Merged-chr12-80237224-2	chr12	80236724	80237724	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	23147.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	3.67806115394275	3.61608904514315	4.15208393453547	4.07357516947858	3.76025439877668	4.30116160581657	0.687137034305689	0.228002426522247	0.623000982072215
Merged-chr7-114577125-3	chr7	114576621	114577621	+	808.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14149.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	4.88466017438583	4.86016605978791	4.71190871262827	4.725368023954	4.89099868781488	5.03415011006957	0.129302614109526	0.742432122454222	0.935219340999573
Merged-chr7-121034436-6	chr7	121033884	121034884	+	920.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021554)	promoter-TSS (NM_021554)	-61.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	6.90946148957531	7.21772800366461	7.33352158433933	7.07505648222051	6.96492204696756	7.06408265346861	-0.192436367819015	0.451265542895758	0.808957790071745
Merged-chr9-32668228-4	chr9	32667720	32668720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27822.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.25547223915296	5.36642300930605	4.93825352807038	4.74109451779263	4.90902528344952	5.00410877104573	-0.689286283637835	0.0750396541244604	0.360668873636097
Merged-chr8-11461117-4	chr8	11460582	11461582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16847.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	7.90471699759279	7.91439878288951	7.71580388699687	7.94880481088706	8.20966723501561	7.66968797948933	0.170149613811206	0.490155737282941	0.830031090218234
Merged-chr15-44617115-4	chr15	44616603	44617603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2124.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	3.00400978278686	3.36747930291121	3.4338207459532	3.07468781854199	3.4319540881774	3.39800975920341	0.129127549530526	0.847650365352099	0.964318271116593
Merged-chr11-86760088-2	chr11	86759588	86760588	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2521.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	3.70146444500826	3.93701130424007	3.61981653916045	3.31138557054217	3.73112197708702	3.69071171950021	-0.572991894754452	0.337249402146746	0.727188944229835
Merged-chr3-89913207-4	chr3	89912709	89913709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-13.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	7.73041461186331	7.97584176185516	7.65448312758501	7.58996332341754	7.62117665294058	7.82362279535913	-0.175016062639099	0.454082845568346	0.810100289331925
Merged-chr4-142094509-4	chr4	142094005	142095005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10201.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	7.31618952176502	6.96594957188839	6.83489200271971	6.71727785535644	6.52756705698029	5.663855141124	-1.06425547941052	0.0904146801423349	0.399958782843349
Merged-chr7-100856440-4	chr7	100855934	100856934	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	6979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	6.66077272721074	6.22203791480479	6.46326806264381	6.52338407919471	6.75173487994037	6.59295595170884	0.270870693178897	0.340520922231272	0.730173453949955
Merged-chr8-104110937-4	chr8	104110437	104111437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5064.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	7.07120891743807	7.26678608990853	7.25949645533487	7.45659925263472	7.67004896207411	7.37311589776967	0.465487968983667	0.0531121644859009	0.295381489872188
Merged-chr11-70777394-4	chr11	70776884	70777884	+	952.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12937.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	3.30050220068658	3.16177606669765	3.32748152986884	3.37362472794445	3.3321783830357	3.22626496210985	0.213291556114962	0.728509326134233	0.930478966998914
Merged-chr19-21271365-4	chr19	21270861	21271861	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-917.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	7.41844463043656	7.58951878234531	7.34259432618197	7.41669862721542	7.49993993520333	7.48498890843634	0.0122859806838968	0.957260661625669	0.989929968588261
Merged-chr13-41596544-3	chr13	41596028	41597028	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9688.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.18826472150046	6.45528284043414	6.35973126904305	6.35248299947347	6.6740769912019	6.49306748216508	0.294664173997153	0.29639203421049	0.693108548777091
Merged-chr10-13988414-4	chr10	13987887	13988887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	22008.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.08228687981634	8.46045179073129	8.02642769097428	8.05422569515147	8.32759488759844	7.74196958183267	-0.193028279782713	0.465463455772528	0.817020164214671
Merged-chr11-98951271-2	chr11	98950771	98951771	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-9200.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.92984600434976	3.91517226670132	4.59201048262195	4.14128479120964	4.29436270019471	4.5472162811085	0.424551413086256	0.426382326723225	0.793775990271191
Merged-chr11-116145587-2	chr11	116145138	116146138	+	553.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172571, exon 28 of 31)	exon (NM_172571, exon 28 of 31)	-6770.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	5.4541628688846	5.74755029039734	5.59886621654409	5.37326760580532	5.3808087528127	5.46321744909507	-0.390580959552812	0.240123114190924	0.637109682764418
Merged-chr9-118748547-3	chr9	118748024	118749024	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36832.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.17284509927101	5.02208606636286	4.50643636494995	3.96214834823501	3.94532383872341	4.13879922635501	-2.44255282219347	6.62406823061578e-07	3.75716066348383e-05
Merged-chr8-88228984-4	chr8	88228488	88229488	+	999.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	29775.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	3.92801935153469	4.03525542027616	4.39302223836741	4.32291987299887	4.25564029745184	4.41857536904769	0.57190389908362	0.237494976438868	0.633929426090698
Merged-chr15-76700792-4	chr15	76700282	76701282	+	840.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-760.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	6.35618450565729	6.76613768499626	6.37258796133658	6.40625479185261	6.75101400705184	6.33256174997843	0.00177606930266874	0.995315151277719	0.998961028701257
Merged-chr16-31081407-4	chr16	31080911	31081911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198626)	promoter-TSS (NM_198626)	21.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.56984554706135	4.60310045146041	4.77004457938551	4.93151854884822	4.37447450963216	4.55934820276958	-0.00850870831556088	0.984747361375726	0.996726090469923
Merged-chr12-102697230-2	chr12	102696730	102697730	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	7639.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	2.56351060915303	2.74961958986926	2.86481696101631	2.96620002057453	3.01784286285883	2.99770996604749	1.36542588690347	0.0642069046300866	0.330132121390363
Merged-chr2-119873064-8	chr2	119872481	119873481	+	976.2604369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-24247.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	6.96032910237605	6.89088498998038	6.27237637037956	6.32645927221353	5.86452941319904	5.81666516866611	-1.1831611966436	0.000486433987576347	0.0102859464392002
Merged-chr11-106663876-3	chr11	106663389	106664389	+	822.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50959.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.128258161138	5.91723909567744	6.56184282109351	5.77942657092209	6.02853966373338	6.20313748896977	-0.355512174901983	0.28974613924705	0.687430963346381
Merged-chr11-77492567-2	chr11	77492067	77493067	+	622.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-845.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	4.46355690401298	4.31756728527055	4.32503294751337	4.66807681207207	4.57156160894649	4.34736371163411	0.427957680442034	0.330805255418103	0.722226411767471
Merged-chr3-126611089-3	chr3	126610585	126611585	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14134.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.29857403231399	6.08387209531958	5.72830563264886	5.97837614667112	5.71272192183876	5.76369346086612	-0.432476023169708	0.187258912607675	0.572185054142865
Merged-chr8-71463656-4	chr8	71463144	71464144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022419)	promoter-TSS (NM_022419)	13.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	6.05307882148026	6.02044213290836	6.13995197645196	5.93834219103294	5.95496421541567	5.93264109297787	-0.21678494189338	0.451745381873333	0.809245753174589
Merged-chr6-97401845-2	chr6	97401345	97402345	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	57441.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.95787502758013	4.09570098257903	4.85336291756784	4.39323823248188	4.1812781069687	4.53565824640467	0.0407755271769821	0.94035877424998	0.986825235058548
Merged-chr3-27233028-2	chr3	27232528	27233528	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	B4|SINE|B4	50024.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.74134687352573	3.46288274284302	3.76780403529317	3.7994418716982	3.73287265444873	3.83715274334167	0.426405937565677	0.435945427641735	0.799430009957291
Merged-chr12-40486653-4	chr12	40486171	40487171	+	780.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	40618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.19496745307168	4.1994714138592	4.46859728726667	4.23757324492416	4.13710073754614	4.45491483878447	-0.031705338106446	0.946105066763493	0.98796006280508
Merged-chr11-101642091-4	chr11	101641631	101642631	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14182.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	7.02335953849577	6.84465921477713	6.46928545918579	6.74705439393408	6.7788913610139	6.81818611614454	-0.0483543289911351	0.861085661474004	0.967789299492425
Merged-chr5-67426378-2	chr5	67425878	67426878	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	1421.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	3.9303407770342	3.67227032009754	3.82097481176129	3.88275453621248	3.68080275777861	3.78835704039637	-0.0912636376319085	0.863981800447716	0.968269312109804
Merged-chr4-105242649-3	chr4	105242165	105243165	+	924.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	85318.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	2.37477936298017	2.43508295030132	2.58772439955931	2.98724482464955	2.82349877259346	2.91504821566902	2.77920312557046	0.0012497288255903	0.0214362211638898
Merged-chr1-182960266-4	chr1	182959763	182960763	+	984.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	5475.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.40241669120643	4.91404436999677	4.87823124153861	4.78907560812479	4.77281158143156	4.47043801072713	-0.884980347848891	0.0402980698585237	0.250046368142285
Merged-chr11-94348664-2	chr11	94348164	94349164	+	549.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 29 of 30)	RSINE1|SINE|B4	20663.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	4.63970790569308	4.32175398767455	4.91812408244503	4.33663242936386	4.29216113611806	4.46944588838043	-0.688453414913365	0.136449196953416	0.493487407315159
Merged-chr7-141394306-4	chr7	141393791	141394791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011528, intron 1 of 7)	L1MC4a|LINE|L1	2131.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	6.55329564287433	6.55870253902304	6.55971043635152	6.35245381646104	6.35964907984173	6.71445167651247	-0.131249017477105	0.632290129175594	0.895486061213964
Merged-chr9-47595449-4	chr9	47594955	47595955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	65103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.60569268587765	5.47493546861944	5.56914116075997	5.16349456807848	5.18993680995102	5.06646390503885	-0.797075427394819	0.0198235803526331	0.160455299025476
Merged-chr9-106242947-4	chr9	106242445	106243445	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020559, intron 3 of 10)	intron (NM_020559, intron 3 of 10)	4785.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	5.31443287731191	5.12301374334617	4.9762487666063	5.41358174097693	5.22665641330381	5.34923194568539	0.350831816844738	0.330903419321689	0.722226411767471
Merged-chr10-67047904-4	chr10	67047401	67048401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	42826.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	5.2999674407864	5.33780785474557	5.41288733261982	5.4755381913419	5.91331185645828	5.38330816972583	0.535545483560018	0.132515086058118	0.487114122668487
Merged-chr10-53374863-2	chr10	53374363	53375363	+	986.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204983, intron 1 of 12)	B1_Mur1|SINE|Alu	4988.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	5.11490098290026	5.07158843484121	5.36681574589168	5.21696081506699	5.32618354091493	5.53835178674211	0.36542777104613	0.309174887889409	0.704802606494279
Merged-chr1-152569867-1	chr1	152569367	152570367	+	554.0	f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	L2|LINE|L2	55350.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.99419242539861	3.22234435137312	3.160222148968	3.40049441153495	3.10230361537461	3.45452841431664	0.798366624809348	0.223514530269515	0.618229466298768
Merged-chr6-34351187-1	chr6	34350687	34351687	+	558.0	f0_balb.idr	Intergenic	RMER10B|LTR|ERVL	-2959.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.61441923686759	4.38641533274066	4.49081416450407	4.19298850121089	4.0991703967357	4.1051859778005	-0.986956194468193	0.0309404308250167	0.212924046172824
Merged-chr1-138297933-4	chr1	138297417	138298417	+	811.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	24179.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	2.97889747360419	2.76858555193829	2.89651917460893	3.24890032213868	2.75407128371516	3.20663195686671	0.926196065090295	0.208291984718841	0.599165811939819
Merged-chr4-108780736-4	chr4	108780244	108781244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347163, intron 1 of 18)	CpG	344.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	5.78394289141294	5.77618776877014	5.22148393128524	5.07228101917885	4.38101286864776	4.79018664337672	-1.75864339203532	5.12930431460599e-05	0.00161605131923413
Merged-chr16-30009800-3	chr16	30009304	30010304	+	965.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1137.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	5.81665762539044	5.82361826899237	6.08200460857194	6.28047436019581	6.01288718883876	6.35836263607573	0.538167150980217	0.0770934129311675	0.365994676965629
Merged-chr5-143112565-3	chr5	143112089	143113089	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080561, intron 1 of 16)	CpG	431.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	7.06076759498673	6.62969962600563	6.93308217718638	7.05668760850128	6.53212676990291	6.95024932765801	-0.0397277703527712	0.892152595415689	0.97498214708721
Merged-chr13-8871106-4	chr13	8870601	8871601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-57.0	NM_172445	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	7.45693956639302	7.85753193585265	7.77508349306537	7.76510860582327	7.84457552886574	7.38422263368254	-0.0281427542926088	0.913267562708336	0.980560320145079
Merged-chr2-22803998-2	chr2	22803498	22804498	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	PB1D10|SINE|Alu	29671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.68519227661243	5.00955942737782	5.11140274973475	5.07642384292259	4.75788955207915	4.90051289751774	-0.0583010974638347	0.885330833370749	0.973576084147613
Merged-chr2-60209836-4	chr2	60209352	60210352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-84.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	8.47188928688792	8.24506901084141	7.84732431363497	7.95776333909608	7.92574120843677	7.92817251661557	-0.401676578779289	0.10437083686276	0.431013380002805
Merged-chr1-43461462-2	chr1	43460962	43461962	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	15711.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.11792477917872	3.15380556470791	3.14392562237813	3.23125083757612	3.2276605404406	3.3289297082073	0.516482519095389	0.408324640209018	0.781982251625038
Merged-chr6-59023746-2	chr6	59023246	59024246	+	975.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	756.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	5.52890042606337	5.79961541031442	5.5008706293701	5.82143928224912	5.88938209744257	5.30314108760806	0.161383471880418	0.65128467214466	0.902765246794264
Merged-chr9-114753000-4	chr9	114752492	114753492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	21789.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	6.65396914975396	6.45688976090988	6.26808139329513	6.7701863395926	6.78739624946746	6.59741305520901	0.392817958820419	0.151249800141731	0.518506648409409
Merged-chr9-21169694-1	chr9	21169194	21170194	+	592.0	f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	B3A|SINE|B2	3980.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	4.03961348572309	3.87070185376577	4.31475431219475	3.95087730274113	3.76086050544217	4.03505768081452	-0.494746208696132	0.342552446354771	0.731471837188352
Merged-chr6-116073118-4	chr6	116072604	116073604	+	993.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-78099.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.99331616983567	6.93693575753018	6.67560549768613	6.61273885692611	6.28200376916232	6.12489812798115	-0.825519406439022	0.00426986003965588	0.0546342479132226
Merged-chr8-78509330-4	chr8	78508814	78509814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	-14.0	NM_001282109	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	7.7611711379703	8.13887260507852	7.76632847606601	7.96747812636498	8.20072905388835	7.81400457244665	0.147857224729011	0.550756117025975	0.86076850085457
Merged-chr11-80183443-1	chr11	80182943	80183943	+	1000.0	f1_balb.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-429.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	6.08422639719594	5.89346578709416	6.01886888409964	5.77723322834762	5.97733701011358	6.07945021138196	-0.0920137041614355	0.759942559754228	0.940572672765463
Merged-chr3-88950466-2	chr3	88949972	88950972	+	1000.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-190.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	7.93884978945908	7.82295366047634	7.7991101591881	7.91203176909449	7.49789023952875	7.56396560577562	-0.265778147369851	0.266395204927475	0.664166899200562
Merged-chr2-45233486-2	chr2	45232986	45233986	+	676.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-116044.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.74847571870417	4.96464269314313	5.33983228138612	4.78935004244623	4.93917230574871	5.03755898849539	-0.227810265500941	0.577648594759054	0.872189231230624
Merged-chr7-45458383-7	chr7	45457933	45458933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010240, intron 3 of 3)	intron (NM_010240, intron 3 of 3)	1453.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	7.49047520679238	7.39129481901128	7.71535805669926	7.51743768578895	7.65788754096325	7.81313144560681	0.192192492001861	0.420048023863915	0.789438387352498
Merged-chr16-31200198-9	chr16	31199647	31200647	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	1091.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	7.57412222669197	7.66866700952684	7.80524681004264	7.67660633224663	7.69587370759689	7.77957092437078	0.0497332763368471	0.821981388249845	0.958041123079214
Merged-chr16-65378471-4	chr16	65377939	65378939	+	980.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142190.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	2.70523975169831	2.56494802366864	2.76275684492564	2.63301190251746	2.48981264437754	2.83539858764783	-0.128357031575726	0.867820367577866	0.969442397421746
Merged-chr16-10495589-2	chr16	10495089	10496089	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	5808.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	4.44094938016617	4.45376885295729	4.58894437432793	4.82170052943121	4.88649056414967	4.34152584236111	0.543736641749375	0.220528819542899	0.615020847852445
Merged-chr19-32220689-2	chr19	32220189	32221189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-9676.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.84404044120275	3.05521573040897	3.1534125743571	3.04613565296442	3.08673010915414	3.22452672921592	0.440322040894155	0.513015878066003	0.842268802551568
Merged-chr5-45857845-4	chr5	45857308	45858308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-268.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	7.43703591432886	7.61947344709171	7.64241892844966	7.39223097884724	7.58033872031458	7.35903986680513	-0.166223944020579	0.475051729041225	0.821727753368561
Merged-chr2-145806485-4	chr2	145805967	145806967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20351.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.68720629858334	6.52339225956495	6.78295888752426	6.06798770137824	6.18074849787624	6.36701098027818	-0.748870249696634	0.00707391049558484	0.0787748855081134
Merged-chr2-83723636-2	chr2	83723136	83724136	+	614.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	-761.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	5.57822604798089	5.89601604123814	6.02586076353845	5.53307158195465	6.11721890855004	5.93017137626461	0.0859623801153723	0.805393213819851	0.953884542531097
Merged-chr16-10489762-4	chr16	10489235	10490235	+	819.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-46.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.12870546589344	5.37160795118894	5.59880163074202	5.73134431768642	5.64965540398477	6.17112625248791	0.911856591826393	0.0117072049687681	0.112304947087994
Merged-chr5-99235133-4	chr5	99234626	99235626	+	940.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17801.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.22191157188974	6.25244540639206	6.51260296289844	6.28864718697626	6.29482687838104	6.35822758085939	-0.022799651502888	0.934713886107047	0.985727536128156
Merged-chr7-118491192-1	chr7	118490692	118491692	+	1000.0	f1_balb.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	783.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.81580847548385	8.12592122404086	8.0186753948653	7.9705869885686	8.00039231172423	8.05332631842747	0.0198054750290068	0.928303220773634	0.983802612059568
Merged-chr18-50033022-4	chr18	50032520	50033520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	2036.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	6.58943496205375	6.35125501521928	6.69575535784313	6.21239160446941	6.17964820505165	6.32920936092383	-0.507719654123618	0.0696798721138936	0.345526189262129
Merged-chr4-124849823-2	chr4	124849323	124850323	+	561.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153566)	promoter-TSS (NM_153566)	741.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	4.76020495780316	4.91935455451099	5.17796608714904	4.98873045184309	4.56656781232473	4.87527533844067	-0.310190052022911	0.455923329952467	0.81123938862117
Merged-chr10-80245860-4	chr10	80245374	80246374	+	962.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023431)	TTS (NM_023431)	-3578.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	2.82775615380357	2.87653537108192	2.96409970469108	2.77991584766145	2.84448732765734	3.14781869697882	0.189511111055781	0.789262098710453	0.949154090987258
Merged-chr10-84409481-3	chr10	84408964	84409964	+	811.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31007.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.03463987448044	6.3605215225794	6.009887155942	6.24479583325016	6.03312374690234	6.22414853234662	0.0199992390556364	0.946868068409179	0.988007649185823
Merged-chr9-14784432-6	chr9	14783855	14784855	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310728)	promoter-TSS (NM_001310728)	218.0	NM_019683	56503.0	Mm.272618	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	7.68696226040918	8.24079436321532	7.55037649409437	7.70175186710332	7.89090446946666	7.5138435150895	-0.220937447188098	0.432469009164831	0.797386699146392
Merged-chr12-71017105-3	chr12	71016620	71017620	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081195, exon 2 of 24)	5' UTR (NM_001081195, exon 2 of 24)	1153.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	6.1286960987707	5.90616050697278	6.21492788785603	6.389846856676	6.34989800018763	6.33417299423832	0.464428159106942	0.101406665355173	0.424674255939937
Merged-chr6-50110759-3	chr6	50110256	50111256	+	996.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361247)	promoter-TSS (NM_001361247)	-104.0	NM_001361247	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	6.5084179391828	6.52221113868381	6.3915885726947	6.10403612248364	5.85957275690309	5.7741569279458	-0.933483643573466	0.00128255870280103	0.0218613052338786
Merged-chr11-109369366-4	chr11	109368852	109369852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-5698.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	8.11538841147997	7.96140835955262	7.74605638916681	7.67579477068525	8.15680730490054	7.61480312222029	-0.148955977409546	0.57196650620452	0.869773807126863
Merged-chr1-156035638-2	chr1	156035132	156036132	+	1000.0	f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-32.0	NM_172843	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	8.27681070518501	8.4325155517832	8.03566776238479	8.2401631325903	8.26809557066376	8.1833961662366	-0.0457281740655096	0.836457468654009	0.962001762335242
Merged-chr1-177713825-4	chr1	177713325	177714325	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-15989.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	5.054574799698	5.14499180102528	5.38439537948835	5.28966823094656	5.27642504904581	5.35903215615004	0.23237262356465	0.511349258971772	0.841345315498442
Merged-chr18-80853534-3	chr18	80853039	80854039	+	735.0	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_015805, intron 8 of 28)	RMER6A|LTR|ERVK	80519.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	3.97599970890988	4.03713186112474	3.87061021183743	4.48555759683721	4.18439424610123	3.94311395365176	0.743035549308965	0.146217125587822	0.510064920685029
Merged-chr7-132347117-2	chr7	132346617	132347617	+	708.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29889.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	3.19210066948897	3.32571050491148	3.03505475691066	3.0154882581886	2.99715168337051	3.28048719072473	-0.426673816425247	0.524615419286206	0.848752537154544
Merged-chr16-58499365-2	chr16	58498865	58499865	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24061.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	8.0352692991	8.17663182871152	7.67629970342912	7.74072995955163	7.99505321339812	7.51209886055579	-0.304438781901964	0.244970320746559	0.642381314494918
Merged-chr14-121797849-4	chr14	121797346	121798346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-112.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	4.8065679946309	4.61878407856413	4.29439301775944	4.39159846510615	3.89334480484283	4.00549711945284	-1.27183278366653	0.0123547656791239	0.116572501366269
Merged-chr11-98660664-4	chr11	98660152	98661152	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3699.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	3.41367647389547	3.37947341495952	3.41996446088066	3.46175348205232	3.37387508921742	3.3789985526753	0.00630355680916359	0.991402605303727	0.998240857500334
Merged-chr6-6217149-4	chr6	6216645	6217645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015829)	promoter-TSS (NM_015829)	28.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	4.76425844247307	5.03590760077266	4.86388637480604	4.04011875772065	3.77786642908312	4.18563838439067	-2.43308515780244	4.9033559951379e-07	2.88746246032155e-05
Merged-chr8-124520732-4	chr8	124520228	124521228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029746)	promoter-TSS (NM_029746)	-39.0	NM_029746	76332.0	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	5.52636062718931	5.54033118829267	5.33690871731303	5.48073701046465	5.47075150076577	5.3032314002148	-0.0992956916515645	0.767016224102234	0.942573703853445
Merged-chr2-129565142-4	chr2	129564578	129565578	+	880.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27761.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.88293333904623	3.26224421880093	3.33067668090365	3.50596312014196	3.53397804260332	3.57691875808401	0.0260247683613095	0.967530499758595	0.992568985241011
Merged-chr2-60884203-4	chr2	60883712	60884712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	MLT1M|LTR|ERVL-MaLR	-2774.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.99632265014875	6.02179897200361	6.19053173789303	5.96374337979577	5.94963376526625	6.06213212723144	-0.133260120774444	0.646298391460875	0.900976246381167
Merged-chr1-16226741-2	chr1	16226241	16227241	+	775.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D11|SINE|Alu	120859.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	3.89394580572569	3.71588331782867	4.2962381551942	3.92527310202508	3.5561961560673	4.36202337374662	-0.00267162390803559	0.996455144682926	0.999072655485924
Merged-chr18-62068186-4	chr18	62067695	62068695	+	777.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	111786.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.83532068332356	5.61942841391792	5.82997746174603	5.57256350645224	5.598925264888	5.84322978672518	-0.170537991567758	0.594163381741271	0.878855666582425
Merged-chr8-126569578-3	chr8	126569097	126570097	+	929.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23839.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	3.30229107944369	3.53686335881439	3.51575545005761	3.34129853481673	3.36522792510491	3.68652401450895	0.0428128149852411	0.943427599230315	0.987380806962619
Merged-chr11-76763626-4	chr11	76763127	76764127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016810)	promoter-TSS (NM_016810)	-49.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	7.74614769907067	7.76097656409092	7.57133144115893	7.85937387119845	8.15835786565658	7.68586190157716	0.323286131689491	0.182584902949506	0.565408433368907
Merged-chr18-23749799-4	chr18	23749298	23750298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_126066)	TTS (NR_126066)	2507.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	5.56360995693394	5.46408002049871	4.81065119686026	5.13083190705154	5.18390662649263	5.2556091080187	-0.290716254238389	0.470387487610649	0.819495618343931
Merged-chr1-46849950-4	chr1	46849447	46850447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3671.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	3.11428660562872	3.21344968692047	3.60461317984159	3.18242502793683	2.94707975345169	3.42639735919185	-0.515920918933854	0.453765523543975	0.809979841654596
Merged-chr19-8941886-4	chr19	8941389	8942389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-31.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	7.84344064249406	8.35687835510567	8.01977579288171	7.81988044102346	8.03785220639614	7.79035542610122	-0.288585265278041	0.245327423307358	0.642393755173178
Merged-chr16-14352275-4	chr16	14351788	14352788	+	831.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9270.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	6.83832513120292	6.93436275396075	6.91984274757596	7.01910413221595	7.53109911846069	7.04731694928375	0.50807594563945	0.0615237107889861	0.321804433450463
Merged-chr6-28802618-2	chr6	28802118	28803118	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	29129.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	2.66054650681456	2.88996065715615	2.91799520104422	2.68028761724653	2.66950236168775	2.87308903996685	-0.44704457739601	0.545197044572473	0.858043421312395
Merged-chr7-25783286-2	chr7	25782786	25783786	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	B1_Mur4|SINE|Alu	5447.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.66057501631116	4.67202924905325	5.08594234742373	5.35568187855825	5.22944766037396	5.27714310403215	1.02950670230571	0.0074892718999672	0.0820712941199092
Merged-chr13-47234728-3	chr13	47234210	47235210	+	910.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 4 of 7)	PB1D7|SINE|Alu	40707.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	4.23743512357928	4.59266001080318	4.3477445370336	3.78208027644645	3.45983888161675	3.78892517180077	-2.28895048634767	3.22131791000313e-05	0.00109359208753791
Merged-chr6-86370253-2	chr6	86369753	86370753	+	795.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025591)	TTS (NM_025591)	-1287.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	4.36001721434775	4.23491382071828	4.22879046948404	4.47129377144948	4.56793385932418	4.38993598195351	0.533512542305392	0.227593751346514	0.622804645707919
Merged-chr11-5521577-4	chr11	5521042	5522042	+	975.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013842, intron 1 of 4)	CpG	901.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	9.50659282695005	9.82860400442215	9.2616620978163	9.15703205660161	9.50574801038475	9.27618471715855	-0.316542806956169	0.184496408915903	0.568219165454137
Merged-chr15-102074437-3	chr15	102073932	102074932	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145625, intron 1 of 14)	CpG	659.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	7.18946065754266	7.47402245599552	7.35305861660609	7.57432646765422	7.63189883207436	7.3315762366382	0.265881963114988	0.272225152495073	0.669543037120097
Merged-chr14-27367704-1	chr14	27367204	27368204	+	746.0	f0_c57.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	6315.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.90086068923123	3.04272218520717	3.30294217597737	3.42533723200502	3.53766927431329	3.31859037420936	1.46946031119064	0.0273891972833404	0.197316045675514
Merged-chr2-68242263-4	chr2	68241790	68242790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	137618.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	3.17587115695692	2.80851277862715	3.04803625192017	2.80431809098564	2.72871715221914	3.06275102862133	-0.730683634236513	0.317753942352968	0.711531250433619
Merged-chr9-53007651-4	chr9	53007137	53008137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	240475.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	5.23566832998527	5.05969526783292	4.78880456174779	5.28116687575597	5.07227290352956	4.85669806445972	0.075924730709773	0.848640099855305	0.964356989789491
Merged-chr10-81605192-4	chr10	81604705	81605705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1103.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	6.00253156381374	6.11601539617425	5.98379270589177	6.31427693197278	6.46231808971091	5.99698886665722	0.416814988611926	0.164616066884033	0.539208350811795
Merged-chr5-124049017-4	chr5	124048533	124049533	+	873.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-16773.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.15216268548468	4.94143963705943	5.22873573595624	5.05360542718037	5.2083419802513	5.19704571735818	0.103709755313005	0.776538782354193	0.944887457440119
Merged-chr11-82991761-2	chr11	82991261	82992261	+	869.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172796)	promoter-TSS (NM_172796)	69.0	NM_172796	237886.0	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	5.94623576538456	6.22740781361632	6.31045258429039	6.22108970869882	6.27941434680245	6.31283214159956	0.17839967231338	0.536953139177541	0.854250636315698
Merged-chr11-77981857-4	chr11	77981344	77982344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-972.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	7.389703460329	7.5870233306462	7.27046691358248	7.26922371541353	7.92328676691062	7.25542837162025	0.158958518924744	0.584491680369563	0.874568023559098
Merged-chr10-17989286-4	chr10	17988798	17989798	+	976.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33792.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	3.56412055435856	3.44761083718469	3.66961746430427	3.97335672487136	3.56912165991142	3.74024901313429	0.718484454542464	0.205588449147456	0.596131993192832
Merged-chr7-99947600-3	chr7	99947101	99948101	+	810.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	32857.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	3.38987083467546	3.38042823522668	3.39412748872551	3.36041956533249	3.18455030259827	3.51820187609554	-0.136656823473421	0.821974957037895	0.958041123079214
Merged-chr5-100656500-4	chr5	100655980	100656980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	17776.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.3049116487398	4.9844678488661	5.19052015382649	5.67332484558351	5.60312933836336	5.3857855492799	0.786070168626811	0.025623522784387	0.189703895706315
Merged-chr14-22019606-7	chr14	22019113	22020113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028275)	promoter-TSS (NM_028275)	-99.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	7.8965575859448	8.2709840541098	7.81376930099698	7.99324909703711	8.15934912271222	7.76483880381143	-0.0379201810331532	0.880210304703914	0.972457465737931
Merged-chr4-3683067-4	chr4	3682571	3683571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	4950.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.18590305191097	6.73660879344219	7.17914601880784	7.02778410166422	7.29736897093275	7.30492489336106	0.255903302217738	0.343013211503195	0.731856773485056
Merged-chr2-174077349-4	chr2	174076833	174077833	+	941.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	282.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	6.34767984587922	6.32727281374605	6.51152858305116	6.76207608092024	6.91514256796653	6.53541079471643	0.583957281848219	0.0318376516718849	0.216377404445066
Merged-chr12-80846386-3	chr12	80845851	80846851	+	827.0476070000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	55819.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.69859723973784	6.45407561066013	6.59449164114214	7.27074558933264	7.63461965701437	6.82236969610123	1.08747130873861	0.000306363772841654	0.00709685880028072
Merged-chr17-43073113-3	chr17	43072581	43073581	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	56526.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.17857812003934	5.01451942059098	5.11341694480735	3.90744213772659	4.01969005593026	4.39368337136757	-2.54404743368716	5.93050108797319e-08	4.4738452813062e-06
Merged-chr4-12083436-4	chr4	12082952	12083952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	4505.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	6.23243320587747	6.28317327512758	6.3311255476245	6.4214084986063	6.57333168970175	6.83128436271929	0.539431430180581	0.0527058061191788	0.293760112235557
Merged-chr6-91687154-1	chr6	91686654	91687654	+	551.0	f1_c57bl6.idr	intron (NM_009320, intron 1 of 14)	B1_Mus1|SINE|Alu	3087.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	4.01281849653267	3.81296998463899	4.3415524532727	3.64521923008943	3.90334618359963	4.44483958773415	-0.0954417176319396	0.870589525589993	0.970084781962666
Merged-chr8-46136516-3	chr8	46136024	46137024	+	847.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	-12378.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	5.03771183389287	5.2626025546196	5.29778823980975	5.04457884962783	5.20394336452247	5.68171519858348	0.253730862693776	0.513800530557705	0.842787325048798
Merged-chr16-48992811-8	chr16	48992283	48993283	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027341, intron 1 of 30)	intron (NM_027341, intron 1 of 30)	1329.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	6.06832292262501	6.04096898230042	5.66675767776351	6.01352206953762	6.3966673398624	5.67126442096275	0.225337918243231	0.522577307811078	0.847663852239783
Merged-chr16-90219827-3	chr16	90219336	90220336	+	778.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-906.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	5.72612261694787	5.24706935740995	5.3972637119102	5.55812140703264	5.36771051604764	5.00781246140884	-0.264390488135058	0.491340483627352	0.830479151309655
Merged-chr11-75574163-2	chr11	75573663	75574663	+	938.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-13916.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	3.74444176589646	3.3422784863425	3.57140044473805	3.38858939836581	3.37029631376601	3.36557500607071	-0.703445815085333	0.243659557699708	0.64086208327192
Merged-chr3-79173491-4	chr3	79173016	79174016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27641.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.6467480120621	7.70389975140858	7.26804955611185	7.38958561906972	7.91398001973095	6.93836603561655	-0.0991399371286166	0.757374767096179	0.939861209437025
Merged-chr19-5843830-5	chr19	5843321	5844321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	1657.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	8.0674549041388	8.20198728369019	8.17605198310676	8.12833741488915	8.34547569048704	8.16558833651519	0.100059307222492	0.637329782575279	0.897338937840938
Merged-chr11-118211989-4	chr11	118211507	118212507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	735.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.14118877946523	7.96377704792649	7.63356246376514	7.56116139175765	7.55201707793533	7.32299248267528	-0.654484828751617	0.00897616339092032	0.0933960989660745
Merged-chr7-105745038-4	chr7	105744524	105745524	+	896.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-686.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	6.47250691205772	6.74691747957754	6.59592071192711	6.96497764293751	7.07101139418855	7.07984139039054	0.662200969264261	0.00935331679523283	0.0960353879439454
Merged-chr7-107597775-4	chr7	107597286	107598286	+	954.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	2735.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	5.47337238179376	5.91770843614125	5.91439725276298	5.71625305496478	5.71116142128231	6.0409039012581	0.0750714824440562	0.82434408217737	0.958538023027357
Merged-chr2-66257428-2	chr2	66256928	66257928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-811.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	3.41791685479451	3.59568661200507	3.75503623849147	3.47054653145489	3.59549029272143	3.62349425484021	-0.092075781080089	0.872198127899142	0.970261003150518
Merged-chr14-65112975-4	chr14	65112501	65113501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-14895.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	5.36677663961172	5.17217912307406	5.45061625488239	5.47440658528701	5.46486519261121	5.64900346755886	0.38497149465822	0.256693193083265	0.653737977781352
Merged-chr10-70197854-4	chr10	70197353	70198353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6811.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	6.45681792682132	6.4020139100789	6.60675155105845	6.58818065826345	6.43413878057156	6.58314934915751	0.0768490468500497	0.772445007597753	0.943716660313239
Merged-chr9-53376961-4	chr9	53376466	53377466	+	748.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_176846, exon 6 of 6)	exon (NM_176846, exon 6 of 6)	-7057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	2.62799325750044	2.49481898671873	2.39261042496992	2.52530572589863	2.50355969151894	2.65977303987548	0.288926937450315	0.717441043617464	1
Merged-chr1-155095921-3	chr1	155095483	155096483	+	856.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010500)	TTS (NM_010500)	3653.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	4.25566092660464	4.60932043788221	4.51192782170127	3.99205001023662	4.29393441846817	4.41456190385284	-0.588024633985139	0.218460267548454	0.612681315250658
Merged-chr2-118390240-4	chr2	118389762	118390762	+	907.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177806, intron 1 of 37)	MER46C|DNA|TcMar-Tigger	1150.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	5.76679584456285	6.07185174855858	6.15114738576129	6.76637216852877	6.85972938824988	6.29734777956784	1.10634343062294	0.000366686683992884	0.0082063651430016
Merged-chr4-99227408-1	chr4	99226908	99227908	+	650.0	f1_c57bl6.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	33261.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	2.82044287141196	2.62829190189685	2.7583711972793	2.58493128366313	2.60588374394199	2.57959219381062	-0.817918581444074	0.282307479504437	1
Merged-chr2-4499497-4	chr2	4498999	4499999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-60255.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.7876373906029	5.77006988889324	5.88418678461861	5.7707561300955	6.11760936322165	5.94539004107224	0.262990923884946	0.393314061196824	0.771515439837752
Merged-chr4-130783120-4	chr4	130782612	130783612	+	998.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9425.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	5.79971167428408	5.72272415591506	6.13329023573191	6.14091774596179	6.10663620535823	6.04404844934054	0.375496655753252	0.218823286712889	0.61307949900017
Merged-chr9-70839232-4	chr9	70838728	70839728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95580.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	7.46767723540979	7.30825620554987	7.26433187694038	7.55345689736098	7.74389413529899	7.24924314005385	0.277566418256733	0.271790206889643	0.669165567962878
Merged-chr10-81559533-6	chr10	81559052	81560052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_074087, exon 1 of 7)	non-coding (NR_074087, exon 1 of 7)	108.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	6.85335291495647	6.50274978053713	6.78738790149127	6.60984017695882	6.43351688010755	6.55894143373669	-0.298576880956234	0.272099318410822	0.669529543069504
Merged-chr2-51981890-4	chr2	51981403	51982403	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8695.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	5.90876397920108	5.85653133538484	5.28746793384159	5.64881594000078	5.47516769817967	5.05097941725113	-0.558140707528214	0.154341438427823	0.523641596057681
Merged-chr14-52305106-4	chr14	52304630	52305630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019721)	promoter-TSS (NM_019721)	-6.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	6.62424821497323	6.50789902979295	6.69560270224406	6.8000524261062	6.60069864003593	6.94195095632322	0.271919267659434	0.305952903641093	0.702020471196356
Merged-chr4-32518525-1	chr4	32518025	32519025	+	993.0	f0_balb.idr	intron (NM_001109661, intron 2 of 4)	L2a|LINE|L2	53137.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	2.6675654528415	2.59261431021679	2.81638987972749	2.4204461715147	2.62774856459959	2.83038864578438	-0.320193875094368	0.686758875509995	0.91687527626078
Merged-chr19-53310486-4	chr19	53309983	53310983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008542)	promoter-TSS (NM_001008542)	-23.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	6.27567641276356	5.80839284861904	6.39167267665331	6.13719779806599	5.87300368720493	5.96412019531705	-0.308850944441025	0.342921888179789	0.731824685090122
Merged-chr2-174614131-4	chr2	174613634	174614634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29400.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	2.70027811145779	2.62754994638023	2.99332839794139	2.64876818878248	2.83915674790585	2.64640775542714	-0.305427239814333	0.690676207078165	0.917915728386653
Merged-chr9-70657877-2	chr9	70657377	70658377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-703.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	5.62086174903326	5.72770596321321	5.93931913554173	5.67053212001402	5.96968897228952	6.16500420565103	0.331681411207924	0.311365100955179	0.706465219571547
Merged-chr8-81341790-3	chr8	81341255	81342255	+	704.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-807.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	4.41686437268865	4.22567583336225	3.90686193400189	3.74574042090392	3.48457107009862	3.70445227733939	-1.79881354417376	0.00120834248756558	0.0208770269321754
Merged-chr9-106428854-4	chr9	106428391	106429391	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	-520.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	6.54753856214922	6.86234389938295	6.56405797399208	6.65434171459094	7.21994655662338	7.14401574468495	0.55724377278522	0.0564023549165198	0.306140061832602
Merged-chr8-57429415-4	chr8	57428915	57429915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26508.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	3.42373983407508	3.56224425954401	3.43634831019304	3.49243393601976	3.61481789672029	3.45124900842486	0.176573262580424	0.759772962247471	0.940572672765463
Merged-chr10-12955999-3	chr10	12955498	12956498	+	797.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	8261.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	3.55997465525901	3.47254182742997	3.74804758637621	3.78087890324034	3.75281475203073	3.86627968101742	0.70354568466514	0.197334088949985	0.585333483293539
Merged-chr9-44581613-3	chr9	44581128	44582128	+	936.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23264.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	4.54738890971553	4.63700498873377	4.41910218813025	4.67289501691142	5.05821136066934	4.66393757375435	0.655531954757107	0.126699585454692	0.475633616355245
Merged-chr11-53519296-2	chr11	53518796	53519796	+	889.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	-440.0	NM_033144	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	5.30145549451287	4.9928182563185	4.94579471911903	4.83695114625165	4.45253613705933	4.65783572566305	-0.991444568713892	0.0164617541579925	0.141811742638387
Merged-chr12-98283295-4	chr12	98282792	98283792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1c|LTR|Gypsy	14657.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.18324852284106	6.95056476457698	7.19839191099601	7.06789479250629	7.21634598692291	7.2442560709299	0.0993727580571387	0.683540271687979	0.915479407206029
Merged-chr3-90445626-3	chr3	90445125	90446125	+	661.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-11989.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	4.29009628558746	4.56868176132967	4.42018635198933	4.0979919116949	4.28440092263364	4.3136859301552	-0.523778198695973	0.25386780187932	0.651117231535132
Merged-chr19-6331867-4	chr19	6331358	6332358	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3121.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	3.29497550063992	3.18489496028391	3.11711124604098	3.13845908580637	3.46828256184529	3.25004471762971	0.387720853456433	0.547227085540387	0.859256588783723
Merged-chr2-91441848-4	chr2	91441370	91442370	+	881.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175123, intron 1 of 8)	intron (NM_175123, intron 1 of 8)	2844.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	3.49544084905644	3.4349217764416	3.50895910454372	3.47017844586468	3.57561735503453	3.63172694953042	0.294938938212802	0.602610422055487	0.882397657327329
Merged-chr5-38081967-3	chr5	38081440	38082440	+	786.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	42710.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	4.75288038046185	5.00115464000669	4.77376574101173	5.15094419308509	5.3320674099036	5.6014576104906	1.06980704427011	0.00572264994433151	0.067350814224602
Merged-chr5-140831458-2	chr5	140830958	140831958	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1027.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	2.93859102421307	3.00432433176054	3.71246912241073	3.06131346115266	3.21495401561822	3.34503851083342	-0.218144785342267	0.765916165870149	0.942315053650124
Merged-chr6-119947013-2	chr6	119946513	119947513	+	908.3333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_198703, intron 19 of 27)	B2_Mm2|SINE|B2	44315.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	3.22357248902487	3.50008088993224	3.60274237986641	3.32757691754073	3.46068746485517	3.51785499293304	-0.039841340881153	0.947616328484698	0.988008807662239
Merged-chr9-61682551-3	chr9	61682048	61683048	+	877.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	231962.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	2.37103211201379	2.40279858027669	2.49333211761308	2.43156532339884	2.26689518983369	2.56700991597576	0.0056603761910895	0.994505518552131	1
Merged-chr4-134098824-4	chr4	134098317	134099317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3744.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	7.45842214787118	7.30768688018656	7.28553943052029	7.67671328410487	7.98329628878835	7.65513657854222	0.628717988419141	0.00828561210238747	0.0882187091254583
Merged-chr3-8992920-2	chr3	8992420	8993420	+	947.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	MLT1F1|LTR|ERVL-MaLR	11284.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.69328203701303	6.55710777303583	6.40346314448559	5.61324925858558	5.86940555093783	5.93387522867098	-1.26860074590427	1.83610294455794e-05	0.000679317269056366
Merged-chr12-111427920-4	chr12	111427411	111428411	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289487, intron 9 of 13)	intron (NM_001289487, intron 9 of 13)	10466.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	3.71610193742347	3.45596663877541	3.69226249547917	4.07457629357113	3.67860224948297	3.96376267724004	0.939952750406503	0.0930188098340405	0.406374548333771
Merged-chr1-13659105-4	chr1	13658599	13659599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	1410.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	5.88685328929974	6.02509213230102	5.82738923720493	5.71196271162524	5.9328610570892	5.78671020789567	-0.17978529680255	0.557002180164678	0.863958195677929
Merged-chr16-55697130-2	chr16	55696630	55697630	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125008.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.83255895379964	2.85124004818809	2.8445835599287	2.92131057077863	3.03133012676169	2.97863951543463	0.664888721873669	0.333412621094072	0.724368713961084
Merged-chr5-54005688-3	chr5	54005172	54006172	+	856.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	7149.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.18945893283769	4.04044318660765	4.21244675545844	4.53817723264029	4.55766210891251	4.58240350578933	1.09038978365129	0.014345964078658	0.128825704625186
Merged-chr8-4616251-3	chr8	4615769	4616769	+	781.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	3099.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	3.71992302110685	3.60245519705767	3.61358332615628	3.92418363732259	3.99509595548574	3.99437103983737	1.04464162494047	0.0465247616923388	0.272937080731223
Merged-chr3-100409441-4	chr3	100408972	100409972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16933.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.42580044741579	4.29980680450811	4.28233711434367	4.5554993385717	4.34851497984843	4.39607442848399	0.244610716423001	0.580684066968853	0.872961748980909
Merged-chr6-116124270-3	chr6	116123768	116124768	+	930.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MT2B2|LTR|ERVL	69106.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.66224051775838	5.69320173082809	5.36857853406843	5.50153744228174	5.46770662964732	5.69176856431381	-0.0831083058545102	0.803456351734791	0.953504424667369
Merged-chr10-8760696-4	chr10	8760129	8761129	+	991.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	125441.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.76923818752245	6.81841559814265	6.24204265685	6.80349479201496	6.62893845069514	6.52532932179061	0.0184255835662421	0.950329989072976	0.988425934178221
Merged-chr9-21137420-4	chr9	21136926	21137926	+	827.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6151.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	5.17134660279762	5.0800188470955	5.30567293029601	5.28643629007085	5.44569308586105	5.67101706925603	0.572435915444732	0.10540350661737	0.433339508714069
Merged-chr4-141994190-4	chr4	141993656	141994656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	GA-rich|Low_complexity|Low_complexity	11164.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	4.65652911453444	4.4013670236878	5.16690073490556	4.80385615052572	4.58279536353852	4.94908645500792	0.0245515365054255	0.957598165700626	0.98996830630481
Merged-chr10-127310119-4	chr10	127309704	127310704	+	793.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 3 of 20)	intron (NM_001003913, intron 3 of 20)	1582.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	3.66304797584979	3.68496454158886	3.63118255033226	3.64839974865009	3.49381111323625	3.53839249419591	-0.355013751524589	0.521357175922162	0.847005640590649
Merged-chr2-160375036-4	chr2	160374550	160375550	+	925.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7985.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.03549596634201	3.36422132164377	3.60736112605219	3.99454038055263	3.41630715734003	3.93821005599875	0.330021660470634	0.608517372949882	0.885006356798728
Merged-chr3-9833641-4	chr3	9833159	9834159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195031)	promoter-TSS (NM_001195031)	20.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.30797751170716	6.41789008595363	6.24743620637484	6.48881741105221	6.50766909969707	6.36780455701447	0.211980881480352	0.431541901590314	0.796919527665518
Merged-chr2-27424337-2	chr2	27423837	27424837	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	3271.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.76738949628684	4.89390570415021	5.15805940866232	5.05533325389103	5.02774603006158	5.12553017824877	0.27734144324741	0.466918985477782	0.817700312412083
Merged-chr17-35749994-4	chr17	35749499	35750499	+	924.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22451.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.31599154803257	4.26625602378083	4.59972764725742	6.94271423870768	6.78644613596478	6.0106869968517	4.74913687736037	4.52116754352325e-25	8.00419806301027e-22
Merged-chr10-81607356-2	chr10	81606856	81607856	+	984.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030677, intron 2 of 2)	ORR1B1-int|LTR|ERVL-MaLR	1048.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	2.84121917079416	2.73454355453224	2.90656503355321	2.94752054892504	2.74121591079356	2.85850961903482	0.116896863457535	0.869449803067543	0.969788171765313
Merged-chr19-29362555-2	chr19	29362055	29363055	+	735.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-684.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	5.46821642094303	5.48659593734563	5.43077479181341	5.84331079691775	5.65418915529572	5.49449596007257	0.400119664164289	0.222108388001498	0.617038101491437
Merged-chr18-49521708-4	chr18	49521215	49522215	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45-int|LTR|ERVK	-1574.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	3.23962543467404	3.1264607441441	3.38114592701831	3.54955111769691	3.06710012170324	3.34196912985944	0.33251638469242	0.610262397396238	0.88548880861851
Merged-chr7-120102893-1	chr7	120102393	120103393	+	647.0	f0_c57.idr	intron (NM_145586, intron 1 of 4)	intron (NM_145586, intron 1 of 4)	467.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	3.54947178304924	3.30045961220288	3.36717192723257	3.66008962318682	3.47089179985781	3.55187736865361	0.548802511575382	0.35134191623174	0.739233270938645
Merged-chr7-3275998-4	chr7	3275476	3276476	+	976.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13062.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	3.66059815574578	3.32109563372228	3.62762782921277	3.78262173804466	3.487612690115	3.74911352368516	0.460381319409614	0.432265357670491	0.797270167804312
Merged-chr1-185206347-2	chr1	185205847	185206847	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163754, intron 1 of 34)	L2a|LINE|L2	2179.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	3.6600542495343	3.92930636026905	4.35777811230604	3.84454237839263	3.83489018735455	4.04894248655215	-0.28912153389258	0.60384736363902	0.882837513989345
Merged-chr15-36794215-3	chr15	36793747	36794747	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011740, exon 1 of 7)	5' UTR (NM_011740, exon 1 of 7)	291.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	8.69437523907619	8.78477384940193	8.56552877857899	8.39408215504162	8.46825031946691	8.44845973879907	-0.346768397498101	0.0862133793547236	0.388962905674123
Merged-chr19-12474408-2	chr19	12473909	12474909	+	614.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	MLT1A1|LTR|ERVL-MaLR	13630.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.29275697838673	4.27969623901269	4.55134298084303	4.69428186266217	4.74307746415885	4.61792386763404	0.795111707262135	0.0624913959249016	0.324929165610799
Merged-chr5-64718997-4	chr5	64718488	64719488	+	875.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84535.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.37098370459234	5.55916182070153	5.71528130072306	5.32094276138768	5.29932911134894	5.36643348437724	-0.429145142339713	0.206553414543309	0.597141275948059
Merged-chr5-113770593-2	chr5	113770093	113771093	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151532, intron 1 of 16)	intron (NR_151532, intron 1 of 16)	1807.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	2.41699852392302	2.41987866850547	2.82063616696507	2.56773664750557	2.34627257578761	2.59709985026309	-0.321341602990173	0.698674109913365	1
Merged-chr10-40137846-2	chr10	40137346	40138346	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4408.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	5.99819999709594	6.06916749491077	5.72977446932153	6.18893772086027	6.09206741576517	5.84677347411836	0.18444326941043	0.551961617675941	0.861546661145201
Merged-chr18-34624903-4	chr18	34624409	34625409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289606)	promoter-TSS (NM_001289606)	-27.0	NM_009004	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	5.67808520163904	5.96003482277667	6.02836444495145	5.90682704698688	5.91173810896787	5.90640193954102	0.0300324076514414	0.922061712625898	0.982542868764899
Merged-chr10-98778484-4	chr10	98778009	98779009	+	673.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-136133.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.08209741210691	4.90217810791652	4.96619474589051	5.14906471019418	4.88870607362322	5.13438685812412	0.146505245526513	0.697785642373383	0.920111182740464
Merged-chr19-29431159-4	chr19	29430641	29431641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	20222.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.51108410827916	6.36934903923275	6.76723259362635	6.73125071117836	6.92894057388411	6.79598990463147	0.435441525793769	0.106729129056921	0.436012576482454
Merged-chr3-60586890-2	chr3	60586390	60587390	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	85711.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.78878822097697	3.4579645737777	3.50785897801854	3.44028352413477	3.76665751419292	3.57949677187804	0.039717559289435	0.94635439744281	0.987995843244392
Merged-chr16-17233576-4	chr16	17233067	17234067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-20.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	7.50847157699497	7.5830482044075	7.03796076420265	6.9980322174998	6.85079798022526	6.67727766931665	-0.834507237840719	0.00234664140729417	0.0348971784759314
Merged-chr3-87015760-3	chr3	87015275	87016275	+	717.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-16435.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	3.79472216647346	3.86823907197407	3.55997903707492	3.83642081640715	3.7002355118494	3.63193806015245	-0.0922306484926423	0.867092958959248	0.969281921467367
Merged-chr11-21567903-4	chr11	21567404	21568404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	4030.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	6.16918281202312	6.36831641219107	5.8016465883836	6.45445692920536	6.88974880617549	6.28042822815265	0.707517785373927	0.0340295093675619	0.225673660273857
Merged-chr13-73804023-4	chr13	73803528	73804528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40331.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	7.27248560218314	7.12148907163128	7.13998655352377	6.77097737382794	7.00715358165877	6.76412333433322	-0.487160505693981	0.051038860695849	0.28786291064734
Merged-chr12-8432968-5	chr12	8432382	8433382	+	964.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.33071559427152	3.06388290999515	3.10547137829102	2.96512378587344	2.83671540679139	3.17774608713017	-0.817196696084329	0.23696630282007	0.633412320506677
Merged-chr11-68030839-3	chr11	68030341	68031341	+	724.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018768, intron 6 of 7)	HAL1ME|LINE|L1	64383.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	2.66194291775721	2.38677359791368	2.59268842251707	2.63587932035275	2.66643328485923	2.7288793037477	0.705625464252553	0.368251743004456	1
Merged-chr3-88146373-2	chr3	88145873	88146873	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	4001.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	3.99432636396598	3.66295529565792	4.23831101942722	4.02046143990717	3.84647368075059	4.22094588786111	0.156596426352367	0.773032611580861	0.943967710106858
Merged-chr10-91121900-2	chr10	91121400	91122400	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133668, intron 3 of 7)	intron (NM_133668, intron 3 of 7)	2063.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	4.03001116967452	3.75509917527911	3.93336440863789	3.76777237914621	3.96144665482747	3.85293498686511	-0.13379650656216	0.797563444396789	0.951799370596145
Merged-chr8-70654316-4	chr8	70653863	70654863	+	847.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	5375.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	4.52351763232339	4.39639447459628	4.52151022964726	4.44486156645553	4.41617447721343	4.23187210130555	-0.268735882711462	0.541091365607529	0.856717981848775
Merged-chr6-125193181-2	chr6	125192640	125193640	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025595, intron 2 of 2)	intron (NM_025595, intron 2 of 2)	940.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	6.02516162960905	6.01738645995653	5.91213706225537	5.98296577000395	5.84396361921076	5.84989355373189	-0.169190801197232	0.565754331774763	0.86688237163883
Merged-chr5-102070023-4	chr5	102069544	102070544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-123.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	8.65791783826148	8.58580856701258	8.48918233745371	8.50180213973339	8.62877268735245	8.40928480569685	-0.0852303614152991	0.678696445137456	0.91354683395069
Merged-chr1-58392191-2	chr1	58391691	58392691	+	714.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-945.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	5.72249927736414	5.60193156910466	5.63253937424227	5.64449926012859	5.67782828826104	5.77304953788785	0.0764651029493685	0.806341532245862	0.954125791654011
Merged-chr6-38913919-1	chr6	38913419	38914419	+	556.0	f1_c57bl6.idr	Intergenic	Intergenic	-5067.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	3.15919902638113	2.84389197989065	2.87253593806233	3.0942296971595	2.98279985953554	3.1868539959344	0.526270051266398	0.45027203732084	0.808244958990181
Merged-chr10-86952838-2	chr10	86952338	86953338	+	848.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 15 of 68)	B3|SINE|B2	55104.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	3.8427996174541	3.79104255585234	3.94167579118225	3.75928842350367	3.55002946567096	3.7121911351503	-0.610403594924664	0.254181825485645	0.651179145391095
Merged-chr6-51919193-4	chr6	51918699	51919699	+	875.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 6 of 12)	intron (NM_018773, intron 6 of 12)	93350.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	3.72301172797934	3.54479776955161	3.84601683957496	4.0817208751133	4.0568929955419	4.15204608142452	1.23382930092254	0.0177194436920545	0.149079825149491
Merged-chr13-25791486-4	chr13	25790984	25791984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	174832.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	4.83885336551902	4.8300003967506	5.22616450714249	5.06788788121199	5.20004643591371	5.25877188127889	0.448992524032515	0.238956317827435	0.635631523582239
Merged-chr15-88101594-2	chr15	88101104	88102104	+	1000.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-213270.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	3.69547246084196	3.91388531006734	3.35871502080276	2.81827732919825	2.80841718492514	2.9137928038046	-4.74561227923361	3.29866933070344e-06	0.000154157842338749
Merged-chr11-118998778-3	chr11	118998282	118999282	+	935.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10601.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	5.47801284879537	5.86598552948532	4.89458724407649	3.73155851474321	3.45195188739689	4.00341278354082	-5.85165370626666	7.04376852537129e-13	1.38230634778088e-10
Merged-chr11-101010601-2	chr11	101010083	101011083	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243049, intron 1 of 20)	intron (NM_001243049, intron 1 of 20)	1131.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	4.84602724637022	4.79677440373918	4.89896517118986	5.12796221009956	5.22233216533734	4.54422169810851	0.364077043507992	0.39034146510193	0.769585097056154
Merged-chr19-60890209-4	chr19	60889706	60890706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018869, exon 1 of 16)	5' UTR (NM_018869, exon 1 of 16)	457.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	6.74385602874884	7.10629069911716	7.19412786263925	6.50376420640695	6.47830632007323	6.71078546447065	-0.722469531439949	0.00858726372023826	0.0906072837476015
Merged-chr7-132672699-3	chr7	132672212	132673212	+	992.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	62069.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	3.75521228278032	3.84310202823416	3.42237823754595	3.22366297639032	3.38142353572169	3.25152612839239	-1.50504291033679	0.0171063699086401	0.145540575394491
Merged-chr1-85592182-1	chr1	85591682	85592682	+	1000.0	f1_balb.idr	intron (NM_030194, intron 3 of 11)	Lx7|LINE|L1	6628.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	4.71549592686634	4.96223555492386	4.86880991205121	3.77052099473149	3.50743929763816	5.11824621883883	-0.967822733982812	0.509472601123375	0.84034801955108
Merged-chr5-139734325-4	chr5	139733849	139734849	+	945.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1984.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.06789861197345	5.96012137116536	5.77176358947656	6.68509110858576	6.75141621575957	6.35381034072307	1.10688952379533	0.000186519422437795	0.00472879588732603
Merged-chr2-13270836-3	chr2	13270327	13271327	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009105, intron 2 of 8)	intron (NM_009105, intron 2 of 8)	588.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	5.10944247977718	5.04797553306115	5.24822149775818	5.14011991856516	5.40410954781232	5.04207435189694	0.177741921016477	0.629997411132318	0.894507526670954
Merged-chr2-93822539-4	chr2	93822031	93823031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010163)	promoter-TSS (NM_010163)	37.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	4.20565722289288	4.43748974170886	4.33366900975181	4.34516392979847	4.03003586307558	4.22117873069853	-0.35232915384396	0.453742034828886	0.809979841654596
Merged-chr14-60443941-1	chr14	60443441	60444441	+	758.5	f0_balb.idr	Intergenic	RMER4A|LTR|ERVK	65655.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	5.18729066440327	5.71219333194895	5.6468162411849	5.8983451094511	5.80148077236889	5.65491964220212	0.475035982314616	0.172359237679148	0.550874360596261
Merged-chr13-60650145-4	chr13	60649621	60650621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	47910.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.68531240397531	5.9581454917197	6.09313598533206	5.47918691101162	5.63165227552812	5.79625609486256	-0.505636400453716	0.122714707431963	0.468688395116074
Merged-chr9-123863808-4	chr9	123863322	123864322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1793.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	5.71736913008588	6.22191258698722	6.41056465484341	6.36645555370638	6.75530155276267	6.71484031475755	0.789578843249039	0.015712466491102	0.137188133451376
Merged-chr9-118881740-2	chr9	118881240	118882240	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 12 of 13)	intron (NM_001113514, intron 12 of 13)	-44796.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.44872870332582	2.63505595319066	2.6135189340014	2.54853970318735	2.44101935256055	2.6867715945313	-0.0584194702952711	0.940717550161038	1
Merged-chr13-21453054-2	chr13	21452554	21453554	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347491, intron 1 of 5)	L2a|LINE|L2	673.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	6.07439543539719	6.31857882208453	6.27916440043108	6.06272873585431	5.85076966145555	5.77022673105181	-0.554873429637074	0.0644806326018172	0.331036297278656
Merged-chr11-20159137-4	chr11	20158636	20159636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42276.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	3.62775752884659	3.4401327277698	3.40604288756412	3.1499840142767	3.11095511855307	3.58280435318154	-0.803489835841618	0.213813402754596	0.606900020244801
Merged-chr11-8700960-2	chr11	8700455	8701455	+	690.900024	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36420.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.19113116050921	4.23190576448795	4.25181966945796	4.56954743041848	4.74712583829823	4.94716745084704	1.34066101863752	0.00231294073549748	0.0345273004519689
Merged-chr10-120233790-3	chr10	120233295	120234295	+	749.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	6735.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	2.94568042651081	3.27882407822569	3.2824828550741	3.71463251519918	3.51823187412208	3.52536822634119	1.6284957867593	0.0126409408103112	0.118475715582831
Merged-chr16-30070539-9	chr16	30070050	30071050	+	992.607422	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5193.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	4.57181316446428	4.31371702139339	4.20117017054476	4.86468042322008	4.19074248486031	4.32092926966429	0.298115531121713	0.552393469500064	0.861703174022806
Merged-chr9-82976138-3	chr9	82975639	82976639	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-650.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	6.32206218155795	6.82588363040541	6.69738923590977	6.76108549405739	6.84780028215234	6.98555992477149	0.363232291300702	0.196930657498317	0.584803931089222
Merged-chr11-59224633-4	chr11	59224115	59225115	+	844.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	3547.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	5.29939783167363	5.23154520654434	5.51080370189207	5.58350734568003	5.59835355516611	5.39729661086672	0.375101498153961	0.267559588457812	0.664793041950336
Merged-chr8-83748839-4	chr8	83748329	83749329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7518.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.79017524226629	8.77664895421692	8.49148473028491	8.60981165184753	9.06890260205145	8.25063419471832	0.000910160507329704	0.997341459225143	0.999438741884046
Merged-chr12-86079077-4	chr12	86078581	86079581	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-40.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	7.00080257292902	7.43475995512612	6.89860952182165	6.84110714323023	7.14038775322387	6.63179859286212	-0.366881245266315	0.215164393736083	0.608503802392494
Merged-chr2-4492718-4	chr2	4492230	4493230	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-67024.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.24755824921177	4.23516207062735	4.37230670871065	4.82912941334195	4.46311856401326	4.56837367859924	0.878015603183356	0.0478725390273593	0.277355398091388
Merged-chr10-120979441-4	chr10	120978937	120979937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-107.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	8.57094693594381	8.62793803809199	8.03556200278834	7.99134775487073	7.91298930917037	7.45444186559391	-0.886403940589359	0.00130807662227373	0.0222308904383482
Merged-chr9-21148372-2	chr9	21147872	21148872	+	814.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	1534.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.46399898268768	3.40458239774286	3.68375220540866	3.53073387058919	3.41241545187661	4.15152834936347	0.722433940510552	0.249215224397344	0.646143532974884
Merged-chr11-47275015-2	chr11	47274515	47275515	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	104287.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	2.53074333687122	2.63733514414132	2.70563106728319	2.52254860588051	2.32464779263564	2.46484141734287	-1.15265023317046	0.156409821566548	1
Merged-chr11-88997359-4	chr11	88996745	88997745	+	790.919678	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2158.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.39999337008164	3.44255781634817	3.54120110490905	3.43917350577119	3.27246740942363	3.45151601775847	-0.283517714232592	0.630630343001033	0.89479314930704
Merged-chr4-3786200-2	chr4	3785700	3786700	+	926.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	49455.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	2.85037103820821	3.02683307862872	3.28379956994137	3.059557708355	2.88300722060434	3.07943209931834	-0.239135044253898	0.731287001141541	0.931357644172417
Merged-chr17-57279811-4	chr17	57279264	57280264	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	CT-rich|Low_complexity|Low_complexity	664.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.70518451554943	7.42709862747854	7.76550398550997	8.01935120790998	8.01931297972728	7.58353657385754	0.373275430316224	0.137770255972993	0.49616173447565
Merged-chr13-45002194-4	chr13	45001682	45002682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025772)	promoter-TSS (NM_025772)	-86.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	7.55574137429256	7.89634451410256	7.24920183986629	7.70755399507539	7.69682186864944	7.05060299731622	-0.106697365405726	0.725510916936972	0.929698613727862
Merged-chr7-45107223-3	chr7	45106718	45107718	+	870.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3396.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	2.88910629225396	3.00322617416079	3.35760876323174	3.09145986182759	3.23428458672089	2.85647069216956	-0.0915374090470506	0.900393076775298	0.976740549805995
Merged-chr9-113800306-2	chr9	113799806	113800806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	L2|LINE|L2	6976.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	5.97695908392057	5.78492186530191	5.92522463799273	5.74882938651828	5.87673172439169	5.89151854767619	-0.0998420506480199	0.741053882975969	0.934742147011145
Merged-chr2-75657451-2	chr2	75656951	75657951	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1808.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	4.21304803776935	4.21291024436955	4.23759636843387	5.00494302971326	5.30144564098662	4.83987973427045	2.05758820346169	2.16106510413526e-06	0.000106843675095001
Merged-chr5-105649950-5	chr5	105649473	105650473	+	743.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49996.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.8145081325497	4.84759666838144	5.10520843356239	5.0494072359805	4.84804945219874	4.81618157951476	-0.0199534259952475	0.95925943396117	0.990174309444982
Merged-chr3-95740274-2	chr3	95739774	95740774	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-705.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	6.79197045028502	7.01670133089518	6.91063937948695	6.49683955573485	6.82569137664982	6.76416440792672	-0.317946667066797	0.228328862751869	0.623401627899248
Merged-chr7-6152413-3	chr7	6151903	6152903	+	825.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3568.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	5.36999551107283	5.2928845116034	5.30459599354871	5.14749836879939	5.00676413042591	5.48352890717025	-0.223398280507236	0.540710221966914	0.856522543204063
Merged-chr13-48958741-2	chr13	48958241	48959241	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	9087.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	4.08802930616032	4.34625756350823	4.27550445916935	4.25285373501274	4.36411825443587	4.51125106391191	0.358080949434127	0.436204218537301	0.799470052648526
Merged-chr4-119232813-4	chr4	119232315	119233315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286148)	promoter-TSS (NM_001286148)	-91.0	NM_001012400	230696.0	Mm.473722	NM_001012400	ENSMUSG00000078584	AU022252	AI450326	expressed sequence AU022252	protein-coding	5.24581424884889	4.74612418209157	4.82222546413555	4.96724386743563	5.06526834326848	4.96476308709121	0.0816520011483016	0.839449007050918	0.962784121274377
Merged-chr12-85605350-2	chr12	85604850	85605850	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	5332.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	2.86633262200905	2.65790985856536	2.93407989827479	3.05336643845461	2.76421802582287	2.94737588141053	0.509232867521843	0.483086613424785	0.826004252216208
Merged-chr2-128767682-2	chr2	128767180	128768180	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	B1F1|SINE|Alu	-50623.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.08426878942386	3.73376964637121	3.96799704646141	3.97556112813206	3.78707939113767	4.03666941272789	-0.0155622348266298	0.976241073136345	0.994625532184756
Merged-chr3-146658459-4	chr3	146657946	146658946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7129.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	5.27799434037496	5.08934341057101	5.03732316449518	4.93065495679332	5.08836535790855	5.06701649958112	-0.236349782664052	0.521038007022535	0.846922225237145
Merged-chr19-46562340-2	chr19	46561840	46562840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	B2_Mm2|SINE|B2	10842.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	4.38843266306429	4.36213394252407	4.23559538134155	4.72142318402783	4.60387595437555	4.44564628704869	0.663334537818825	0.128912264714472	0.480106155329057
Merged-chr4-126197643-4	chr4	126197136	126198136	+	589.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	3371.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	4.78793412099909	4.69224352552687	4.76047265991388	5.16296916785944	5.1806766774796	5.01592219797373	0.833877459985403	0.0267714460183172	0.194783206310326
Merged-chr1-54250673-4	chr1	54250147	54251147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030025)	promoter-TSS (NM_030025)	-36.0	NM_030025	78016.0	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	3.54116067950949	3.79530473719562	3.79515096120311	3.33442131665608	3.37648284774873	3.20392689598086	-1.49871342430241	0.0151625854666365	0.133677517642285
Merged-chr6-82844047-4	chr6	82843554	82844554	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37799.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	2.97857575085837	2.72591423024747	2.77429265965686	2.81048003583014	2.75883627771325	2.90913298777466	-0.0463547862756912	0.948771599569927	0.988169196639905
Merged-chr6-4798549-4	chr6	4798024	4799024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51218.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	4.58568768102913	4.17135875569116	4.18133996482574	4.10809585079952	3.90584717634613	4.46637019167083	-0.437344144276807	0.395959468038905	0.773231268695054
Merged-chr8-84723011-4	chr8	84722524	84723524	+	874.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	21567.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	3.2360446775521	3.09148940936275	3.63779744694969	3.21900479652126	3.05919970007473	3.18561180281302	-0.73876546694814	0.268801873438968	0.66596594566353
Merged-chr8-83742435-4	chr8	83741930	83742930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1119.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	8.29422131535791	8.45182395808982	7.79476737002806	8.27328174690214	8.57936395236269	8.10939539463047	0.1727754210882	0.52289495939332	0.847832023484924
Merged-chr18-9212752-2	chr18	9212252	9213252	+	782.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-104.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	3.53384737767566	3.27664473852161	3.38819079803226	3.16781130865806	2.87996644514254	3.11344199394174	-1.52539105619896	0.0238756024896044	0.181644064364543
Merged-chr4-132757224-4	chr4	132756712	132757712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133888)	promoter-TSS (NM_133888)	-41.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	5.35706038115368	5.37696240568923	5.50406586927804	5.22093312912676	5.3096243970645	5.16806243843362	-0.335749749978694	0.327229274051976	0.719396012109034
Merged-chr19-56396323-3	chr19	56395813	56396813	+	931.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	-816.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	3.52102556452987	3.47449526601427	3.1953535892602	3.41480103562288	3.11364694148314	3.32903217797474	-0.480474079738672	0.451296801613618	0.808957790071745
Merged-chr10-52426096-4	chr10	52425595	52426595	+	885.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	MTD|LTR|ERVL-MaLR	8548.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	5.34053415323676	5.79121535119127	5.65242381795315	5.44803972127837	6.02167191473597	5.71469279625402	0.274717131668212	0.448128232318145	0.807078936705445
Merged-chr11-23768703-2	chr11	23768203	23769203	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2267.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	6.42869289291395	6.62509925642423	6.29418412275342	6.84647354342151	7.13487584963003	6.58818578407114	0.66648567460478	0.0220814621654825	0.172456758387973
Merged-chr8-122898505-5	chr8	122897960	122898960	+	890.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 7 of 12)	intron (NM_001081379, intron 7 of 12)	50086.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.07394253481834	5.16865656782583	5.29266283520275	5.19631364215418	4.99639025527284	5.4136169204786	0.0503229695132086	0.891765517925725	0.974942585822634
Merged-chr1-152795858-2	chr1	152795358	152796358	+	916.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	5.31090056147276	5.24349031439986	5.33151059121883	5.67718769311875	5.67286034065924	5.73309313993957	0.763180744854704	0.01842339204209	0.153043831734001
Merged-chr15-76344218-2	chr15	76343718	76344718	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025567, intron 1 of 6)	intron (NM_025567, intron 1 of 6)	695.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	5.4217093677894	5.20538026829729	5.40844820564923	5.39776005003802	5.38149662074	5.28618367606597	0.0290242908596425	0.932335039027048	0.985087224393733
Merged-chr11-117779598-4	chr11	117779094	117780094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_154387)	promoter-TSS (NR_154387)	54.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	8.29814329823307	8.20339506570993	8.13268450827505	8.25252838119282	8.44820214653704	8.20198914328467	0.132444511143784	0.534715980654489	0.853068627162717
Merged-chr4-132813701-3	chr4	132813200	132814200	+	784.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17336.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.33617268894552	4.4291660305015	4.74568260790941	4.66495573816266	4.82298848177297	4.91668611878113	0.715153797695862	0.0933914914677385	0.407088157154892
Merged-chr7-29908222-2	chr7	29907700	29908700	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243908)	promoter-TSS (NM_001243908)	-317.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	6.82798235159698	6.86244495128994	6.96991572932078	7.08546291454283	7.01647343227023	6.77989763371678	0.13835069214583	0.581938541181655	0.873484978987509
Merged-chr12-99994224-2	chr12	99993766	99994766	+	942.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	29767.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	7.76345696876649	7.62965750168294	7.17851646690746	7.01248973943498	6.97872868237153	6.354910145572	-1.08499596161841	0.000499215747545389	0.0104816411611801
Merged-chr1-45894380-3	chr1	45893900	45894900	+	993.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31194.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	4.63856326029791	4.5943365454407	5.033936072606	4.48634898214149	4.34333385269326	4.43770622588204	-0.824053774648519	0.0606741033817591	0.319101837203376
Merged-chr15-88515253-4	chr15	88514753	88515753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-85049.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	7.41406361279464	7.32784434415572	7.18686172712951	7.4602436577839	7.75347761698	7.36312062788545	0.334648005189846	0.175216530979031	0.554966360305257
Merged-chr4-9630695-4	chr4	9630190	9631190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	13027.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	8.14588341314976	7.96951356496059	7.77453095846841	8.10610588353761	8.24773787907075	8.04727500500901	0.228724171192841	0.313934601578719	0.708312869876137
Merged-chr1-39580961-4	chr1	39580487	39581487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-3640.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	5.86223278449211	5.8523800110156	5.9513018724914	5.82933015092937	5.7826700590361	5.6875385535623	-0.204013565828215	0.498423225570889	0.833865667012175
Merged-chr6-115375083-4	chr6	115374586	115375586	+	805.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	L3|LINE|CR1	12737.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.44224956561469	6.5546881495536	6.24775303271621	6.3530341955231	6.54846862029751	6.20063891220207	-0.0695972119902364	0.807979799265474	0.954583809755663
Merged-chr5-121721522-3	chr5	121721016	121722016	+	847.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	ID4|SINE|ID	9907.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	7.5855100201524	7.5040178276354	7.50043103932674	7.78334670993303	8.14791243574036	7.5263731459472	0.468061017082316	0.068605041875144	0.342625792230177
Merged-chr16-88480346-4	chr16	88479845	88480845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26633.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	4.6226946046551	4.61762650735421	4.34518695678032	4.28584236675641	4.0946197192633	4.49969118274895	-0.647121557669853	0.160059759856371	0.532632297979799
Merged-chr11-121259897-4	chr11	121259372	121260372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080932)	promoter-TSS (NM_001080932)	-115.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	7.22504867083799	7.43531876329639	6.86071709265888	7.21339203952262	7.10876147675685	6.91931302211604	-0.173676225409438	0.524953939186301	0.84884700169621
Merged-chr13-102688362-4	chr13	102687877	102688877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-5170.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	7.57239531701917	6.98049526639806	7.2590112574568	7.44593531766936	7.4535190127294	7.18317972325224	0.111793947762015	0.682035458204914	0.914930546030715
Merged-chr2-3658033-4	chr2	3657540	3658540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55418.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	6.5880532155871	5.85978821379041	6.54979533941754	6.3328049414972	6.42217757898086	6.47268410729791	0.0630390760908504	0.847701355327737	0.964318271116593
Merged-chr6-128889573-2	chr6	128889073	128890073	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289706, intron 2 of 6)	RLTR53B_Mm|LTR|ERVK	1551.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	7.03963553032588	7.18115569034116	6.96066977038084	7.28574806256328	7.28019127227799	7.20190960795354	0.284233509559051	0.230854778122299	0.62655634346664
Merged-chr16-4673318-2	chr16	4672818	4673818	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030205, intron 3 of 27)	PB1D11|SINE|Alu	6402.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	2.69026759232837	2.75225214336817	3.12147098397756	2.80926950203341	2.60809774401593	2.9721631225197	-0.310685644194633	0.68378196421555	0.915479407206029
Merged-chr3-106496149-4	chr3	106495647	106496647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	10107.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	5.2774499488384	5.50726471635164	5.66837381454855	5.13813497173155	5.12626656154195	5.6299674748113	-0.354529992941658	0.344582965247336	0.733150745942016
Merged-chr4-32189833-1	chr4	32189333	32190333	+	578.0	f0_balb.idr	Intergenic	Intergenic	225726.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.92745211838867	3.89964794092991	4.29749555890727	4.09732222489294	3.62506019523847	3.96612143033203	-0.41894768947117	0.443027489743098	0.80353074331471
Merged-chr15-25986431-4	chr15	25985875	25986875	+	816.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144523, intron 1 of 5)	MLT1A1|LTR|ERVL-MaLR	2009.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	4.72969498632025	4.40118660276642	4.59471903523052	4.63281722939419	4.52914432753162	4.70043312057089	0.0853091432718926	0.840842177721334	0.962832831784718
Merged-chr4-140699329-2	chr4	140698829	140699829	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2144.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	3.48828191120687	3.59542054492971	3.386264135516	3.22620572242327	3.06879420844093	3.40208578199883	-1.06872587608368	0.0893188589946444	0.397032086074383
Merged-chr12-104124889-2	chr12	104124389	104125389	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3107.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	3.81046637467762	3.99746175053208	3.51305395825436	3.75039480259906	3.54196940829503	3.90730318849804	-0.199953599052544	0.729392666450442	0.930622521015005
Merged-chr5-16468388-4	chr5	16467895	16468895	+	918.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-85100.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	5.29248527147843	5.15511636914245	5.32261323034788	5.42908572706517	5.45083923057778	5.15541846552987	0.213939684833326	0.541852744126066	0.85701585686177
Merged-chr9-63569085-2	chr9	63568585	63569585	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	33408.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	4.1524623709248	3.89750070988133	3.9172160759494	4.30400082253514	4.333231835989	3.82313419521922	0.52863528679281	0.314659757029386	0.709026161423921
Merged-chr6-97399258-2	chr6	97398758	97399758	+	755.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60028.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.35847835086669	5.56185244477049	5.71643836539807	5.74193957095733	5.52611634159111	5.89696263212745	0.323954451943307	0.337020538946559	0.726949528325002
Merged-chr16-92860947-2	chr16	92860447	92861447	+	817.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-34873.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.52413445557336	3.89274319806229	3.68796305084741	4.22869557278942	3.80350618980758	3.821830938356	-0.35597762162389	0.556057465190243	0.86357390983939
Merged-chr15-81044606-4	chr15	81044049	81045049	+	895.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	60498.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.6365536590254	5.71714413820294	5.53697305833224	5.43913748826752	5.37034190237815	4.90553831306713	-0.696028161590626	0.0568447782652436	0.307396417762347
Merged-chr10-127289371-4	chr10	127288870	127289870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-352.0	NM_033072	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	9.02419893945355	8.81460226399944	8.37573839547301	8.65305963176287	8.95737755676717	8.13910125336465	-0.187406944375848	0.523373944698601	0.848188188060079
Merged-chr5-99632971-4	chr5	99632474	99633474	+	939.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	96086.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.49473393254677	3.38241991951167	3.36761244333177	3.46430499222497	3.41859390465028	3.32341275820436	-0.0463153690878252	0.937529043370963	0.986057836872162
Merged-chr17-74265134-2	chr17	74264639	74265639	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 1 of 8)	intron (NM_133771, intron 1 of 8)	29724.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	2.84001470925804	2.78927752979958	2.64828518616034	2.7074035677679	2.53018299368766	3.02361985938413	0.00821436015607914	0.991619021854142	0.99832587896332
Merged-chr18-56468048-2	chr18	56467535	56468535	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35903.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.04286031547331	3.81492521401996	4.49884691188184	4.12241708357796	4.11248903837597	4.32886106116529	0.132903077360251	0.8001521955345	0.952408432552781
Merged-chr3-37419756-4	chr3	37419254	37420254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163511)	promoter-TSS (NM_001163511)	-158.0	NM_153561	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	7.83119642932085	8.2424595497008	7.80602106197693	7.82433357448761	8.32091881539702	7.72908939924873	0.0194495233480478	0.943780256487472	0.987495247303971
Merged-chr16-56717527-4	chr16	56717022	56718022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252443)	promoter-TSS (NM_001252443)	-72.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	7.03614296779997	7.38742912697319	7.24595960027781	7.04802679014406	7.18357042713577	7.18559300133604	-0.137398398027637	0.578976666678929	0.872437129840066
Merged-chr1-86435498-2	chr1	86434998	86435998	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9169.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	4.10445107588183	4.07117079591908	3.72956069033101	3.59737419541563	3.62644868908412	3.7468482525471	-1.08086734434265	0.0471254384598464	0.274844990773596
Merged-chr18-62033290-6	chr18	62032879	62033879	+	650.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80304.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	4.57101060152587	4.31871129699905	4.17881257870997	3.69624702027465	3.58023168462406	3.84759890010193	-2.07701450974924	9.39729418517539e-05	0.0026898178691437
Merged-chr3-69632130-2	chr3	69631632	69632632	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-33172.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	4.13020805494874	4.06923085996343	4.20191918910902	3.99969762095561	3.78480268456828	4.22549711754358	-0.374998853723908	0.4564264183234	0.811641875260239
Merged-chr6-119902582-4	chr6	119902067	119903067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011236)	promoter-TSS (NM_011236)	-131.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	7.04886549561468	7.0917704368172	6.7672614606985	7.00544457404831	7.013692932779	6.84164826611208	-0.0387395692155896	0.878859052884369	0.972021640402517
Merged-chr19-4204970-2	chr19	4204470	4205470	+	754.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3367.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	3.33179202572123	3.21953853749025	3.27486938007577	3.2178262808566	3.24899626631155	3.45505036349791	0.119218763803079	0.846318773521014	0.963987423586105
Merged-chr4-155121400-4	chr4	155120892	155121892	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	34788.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	5.22221773905926	4.9902524322478	4.70708405986828	4.55916997342861	4.3356761006749	4.4697122381902	-1.28219159268304	0.00278203467944214	0.0397198938927628
Merged-chr1-74363688-4	chr1	74363125	74364125	+	882.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033345, intron 4 of 9)	intron (NM_001033345, intron 4 of 9)	1517.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	4.82200766405027	4.77459260627834	5.06162958309172	4.87807993966014	4.79852736645228	5.02657447756847	0.0319122540491883	0.934929574971313	0.985727573165395
Merged-chr13-89385868-4	chr13	89385382	89386382	+	851.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-154754.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	4.13888014916601	4.14416097037713	3.70756623806482	4.4346036210626	4.40777274185946	4.3090073224253	0.992717481577195	0.0532950530950377	0.295991930878587
Merged-chr3-142766369-4	chr3	142765863	142766863	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	1116.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	6.00439185312371	6.13971501378348	5.96671831995805	5.69898547830103	5.99218440037099	5.93349427565815	-0.277728782819274	0.359543697316794	0.745797276919176
Merged-chr3-101030772-1	chr3	101030272	101031272	+	798.25	f0_balb.idr	Intergenic	Intergenic	-1277.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	2.20122863525052	2.06167170457237	2.26736833012963	2.04783500397765	1.81732558483899	2.14729684176678	-1.34010666763744	0.190144671720178	1
Merged-chr10-122561547-1	chr10	122561047	122562047	+	940.0	f1_balb.idr	Intergenic	IMPB_01|Satellite|Satellite	8344.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.57230099868403	4.36599911104214	4.30849238921904	4.66848204991435	4.78826538413674	4.72147683481538	0.732881843906071	0.0846872680507721	0.385394912984962
Merged-chr3-88335907-1	chr3	88335407	88336407	+	890.6666869999999	f0_balb.idr	promoter-TSS (NM_178246)	promoter-TSS (NM_178246)	-353.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.68596993078458	7.05373920849835	6.93871376438785	6.95525194484059	6.85404672748916	6.98319033189706	0.040843729135574	0.874428094675595	0.970754540400126
Merged-chr11-90232757-2	chr11	90232257	90233257	+	878.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16719.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.5042885353624	4.27279543144012	4.16597810425384	4.16156188132604	3.89533054532021	4.28071368839516	-0.59587028535896	0.224451128109759	0.619214530942504
Merged-chr2-168578225-3	chr2	168577735	168578735	+	869.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	12130.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	3.83656015810246	3.75562000535681	3.94429980946983	3.33529853497578	3.0426410409537	3.57222938443607	-1.98246449497938	0.00233122282738701	0.0347378920166938
Merged-chr7-19845294-4	chr7	19844806	19845806	+	995.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6697.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	5.68475929666423	5.42230447479681	5.18713565768254	5.23373295595673	5.061904256236	5.49798164072324	-0.384425274827783	0.30667005463442	0.702920001818656
Merged-chr18-46535361-4	chr18	46534845	46535845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9374.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	6.18152247059746	6.10886190167953	6.21387385468927	6.03437058230246	6.16596209718788	6.06058537841421	-0.124636907568412	0.659135810714348	0.905229020277098
Merged-chr7-19228767-4	chr7	19228269	19229269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	CpG	380.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	8.70757597923475	8.72854262702093	8.27798686295264	8.49013440291587	8.89972715999685	8.2675456914259	-0.00695788613588033	0.979063997049429	0.995160277495735
Merged-chr2-6336311-3	chr2	6335835	6336835	+	784.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	13578.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.69034712391695	5.81327206754914	5.36194938665637	5.8533923844504	5.53768278454073	5.05950898827863	-0.2037776632589	0.603184083940528	0.882544198306255
Merged-chr19-6869606-4	chr19	6869083	6870083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-11372.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	6.50906092722461	6.46240123307221	6.65807994576675	6.92113278500595	6.9531492658046	6.82551614929281	0.574746106208633	0.0230704100434635	0.177612193692557
Merged-chr17-31855167-3	chr17	31854659	31855659	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	645.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	4.81767946730562	4.39503147387628	4.24511264764298	4.75706346399012	4.32513485294433	4.78566107239038	0.277568044010448	0.565374177248685	0.866621003251577
Merged-chr3-96152081-3	chr3	96151577	96152577	+	808.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025613, intron 10 of 12)	intron (NM_001025613, intron 10 of 12)	-9893.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	4.32216495109523	4.52917275824016	4.29952301887646	4.2542281455385	3.77456569279988	4.08536595226334	-0.955650795939713	0.0566620305928453	0.306868930068307
Merged-chr4-19707491-2	chr4	19706991	19707991	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	1513.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	5.76274503038623	5.9425683755843	5.26867696041772	5.16208416637498	5.42194942384749	5.07821187668828	-0.878841823360555	0.0219220443013673	0.17166285170602
Merged-chr6-13872720-2	chr6	13872220	13873220	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	1151.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	5.69351091540321	5.72393000555088	5.60643999951042	5.6977517223697	6.12985545729345	5.90411103281516	0.450804999439304	0.160062381153073	0.532632297979799
Merged-chr8-69085962-2	chr8	69085462	69086462	+	722.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-2774.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.06146741642937	4.2768021518738	4.18254022115716	4.35477181217838	3.68471782376184	4.06175323867139	-0.32666279612169	0.543441070261886	0.857551302506722
Merged-chr1-58669864-4	chr1	58669337	58670337	+	935.1375119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347056, intron 7 of 13)	intron (NM_001347056, intron 7 of 13)	17196.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	3.62592697059895	3.71917195088261	3.71625696148888	3.91613103055865	3.72050651154762	4.07512780146459	0.698677606743281	0.19269335097665	0.579689372286238
Merged-chr8-120487112-4	chr8	120486614	120487614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1752.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	7.4522550578096	7.49996405395328	7.16513321645504	7.18628531683083	7.4337892345385	7.39710355900004	-0.0649433761162831	0.791405104552673	0.949737938863565
Merged-chr15-78863317-3	chr15	78862801	78863801	+	949.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7772.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	8.0888149532542	8.19043610716494	8.1097282258323	8.21328721317515	8.60159456831128	8.15172441205212	0.301100266850103	0.195967099111183	0.583755070448692
Merged-chr3-146685234-4	chr3	146684705	146685705	+	880.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-33888.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	3.96577790317909	3.80331914747954	3.95321907234078	3.65240425988468	3.4455635023304	3.50038273792339	-1.2783009644249	0.0216390701460949	0.17021375617691
Merged-chr18-88866029-3	chr18	88865525	88866525	+	874.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28182.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.41447170790556	4.49398234066852	4.83959515783556	4.28721544524758	4.16403231548683	4.62020052802042	-0.57333622311464	0.221245050260661	0.615738783266074
Merged-chr1-85591292-2	chr1	85590804	85591804	+	897.5	f0_balb.idr|f1_balb.idr	intron (NM_030194, intron 4 of 11)	intron (NM_030194, intron 4 of 11)	7506.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	4.49465465439249	4.37501668139506	4.87708686627854	3.5713163220422	3.28907336803528	5.08601456235194	-0.632801755706004	0.755415992181728	0.939315847504439
Merged-chr16-92724712-2	chr16	92724212	92725212	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-27383.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.35633373800347	3.45511419161977	3.09378374399877	3.17569948783084	3.31307790077753	3.34452624734019	-0.155353656243717	0.808569181118899	0.954713910404609
Merged-chr7-19497162-2	chr7	19496662	19497662	+	584.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	11169.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	4.62987682960569	5.10521324881315	5.60150820683887	5.1861631037051	5.4182855830794	5.08078485622006	0.152712823307607	0.73127126014147	0.931357644172417
Merged-chr3-69560145-4	chr3	69559661	69560661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38799.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	4.4945933522524	3.97972485515059	4.39431356270469	3.91852249487474	4.28351705725343	3.94893560243999	-0.649100806695303	0.21895657897944	0.613128894826908
Merged-chr12-40521994-2	chr12	40521494	40522494	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	75941.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.05258690575218	4.71198840836221	5.20268119020017	5.02838686572293	5.23609524969879	5.26589472924316	0.389870645310587	0.316279172009738	0.710339942934364
Merged-chr10-7681573-4	chr10	7681070	7682070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	361.0	NM_010690	16798.0	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	8.21908750845996	7.90281800355122	7.65153768174979	8.03167306892595	7.43415500781583	7.61178011031046	-0.332455641944514	0.237379655280311	0.633784256587971
Merged-chr7-131812964-2	chr7	131812464	131813464	+	824.974976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153496.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	2.55423464988828	2.7225032905404	2.63888908731219	2.87534082746767	2.6679557059086	3.01546528902545	1.12513250630214	0.139634908053872	0.499301307664228
Merged-chr17-5211841-2	chr17	5211341	5212341	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206926.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.23651482587705	5.65930512902862	5.31792358480127	4.87356691374766	5.05250401459467	4.62720841954413	-1.12693702214018	0.00531489218235847	0.0638063120342929
Merged-chr11-3167564-4	chr11	3167102	3168102	+	950.05835	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25861.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.4930121901477	7.10408602593042	6.99783974133068	5.39281948074111	4.93506209992934	7.48579116424019	-0.567918583581943	0.64629435413846	0.900976246381167
Merged-chr10-60741699-3	chr10	60741199	60742199	+	796.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	11083.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	3.79644016474635	3.70285362192213	3.72432688969708	3.70063056336533	3.84630857278384	3.63290606804251	-0.0176096140738966	0.973870863270571	0.994171649042264
Merged-chr5-64296575-4	chr5	64296050	64297050	+	903.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	66193.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.74433150976504	5.59190940270738	5.45265743653314	5.52060110945267	5.57816662126318	5.73731866546978	-0.000434987917784239	0.998937821671533	0.999827005384619
Merged-chr9-119335079-4	chr9	119334593	119335593	+	878.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010851)	TTS (NM_010851)	4947.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	4.86059854037534	4.77822372122253	4.58525699312204	4.97224971312833	5.11237739913895	5.29907982282599	0.813230057013158	0.039060195394297	0.245142822245998
Merged-chr9-100415469-3	chr9	100414957	100415957	+	945.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71016.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.50301925871288	2.42960311138673	2.51634892913944	2.19521606831438	2.37981615764755	2.26502182134525	-1.29132658613778	0.139781179186954	1
Merged-chr5-142822478-2	chr5	142821978	142822978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5091.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	5.36370255878193	5.1362619418789	5.28534919102446	4.95502803329046	5.1003691321791	5.22361288224537	-0.35147255634159	0.331715645532517	0.723003238653287
Merged-chr1-13978863-4	chr1	13978344	13979344	+	945.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-191915.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.87573747823688	3.04022274310707	3.16237096159505	2.8655274497311	3.06738487431241	3.06403158799568	-0.110005619342898	0.872648595811484	0.970261003150518
Merged-chr2-22722010-4	chr2	22721508	22722508	+	921.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52319.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	2.80094737660354	2.96423563680624	2.90923058707295	2.92414045024843	2.9003038184756	2.98175718490186	0.194719483243305	0.77720416320783	0.945038115626604
Merged-chr16-44778948-4	chr16	44778444	44779444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13208.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	7.60142660185814	7.89951769111599	7.27787902376623	7.42480504142953	7.59886450634649	7.22412320879693	-0.284399040710185	0.296575530229793	0.693171366955017
Merged-chr12-75670552-2	chr12	75670052	75671052	+	999.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14-int|LTR|ERV1	-1015.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	6.52622011657343	7.25570150746394	6.94126563948575	6.764207583968	6.96444674505934	6.84216755673399	-0.130116337453443	0.663470067367847	0.907232705551985
Merged-chr17-74458500-2	chr17	74458000	74459000	+	855.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	608.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	8.18634665120662	8.21178910081666	8.12240949645803	8.14627628427188	8.46981196599848	8.06456617743588	0.0999711570103561	0.659285383715827	0.905304280946374
Merged-chr19-34515264-2	chr19	34514764	34515764	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	12210.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	7.58060462616969	7.65916503663907	7.46767431531805	7.44467318520623	7.66005704908137	7.46202638484454	-0.0646842498954907	0.778289614491997	0.945439632982223
Merged-chr9-107872300-2	chr9	107871800	107872800	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029169, intron 1 of 20)	intron (NM_029169, intron 1 of 20)	519.0	NM_011251	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	7.53354616025636	7.65001839752185	7.77608359551151	7.73796623234764	7.54877775425736	7.70505373220277	0.0153291651670525	0.946084290415458	0.98796006280508
Merged-chr10-67538248-3	chr10	67537770	67538770	+	873.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010118, exon 1 of 2)	exon (NM_010118, exon 1 of 2)	340.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	5.24913087644824	4.95146014621444	5.05850778256845	4.98426053724272	5.05900603003052	4.69738032656742	-0.339462964250821	0.3877485665567	0.767721672469137
Merged-chr12-100319929-3	chr12	100319399	100320399	+	806.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43290.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	4.36506408093736	4.31519495798336	4.52998702749658	4.22569074550223	4.01759932818187	4.43658496341064	-0.469694571528715	0.317534085476369	0.71134200749314
Merged-chr8-92858694-3	chr8	92858193	92859193	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	3360.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	3.07056946710355	2.99128220205424	3.08589359188991	2.94867242245228	3.14226693947134	3.09948397987155	0.089223145857806	0.892603019066042	0.975146620821922
Merged-chr6-52471764-4	chr6	52471245	52472245	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20706.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	3.04167277559888	3.05111439899844	3.00005106021316	3.02683818948939	3.17496954882308	3.30171082560849	0.602302993232621	0.358893310125174	0.74519810754794
Merged-chr13-20099710-4	chr13	20099203	20100203	+	799.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	9196.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.23764073688664	4.21285706939538	3.73635326514695	3.65438050201625	3.58403178523046	3.96558508911525	-1.10197044943822	0.0500434479001042	0.284874817874521
Merged-chr17-74222009-2	chr17	74221509	74222509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133771, intron 6 of 8)	intron (NM_133771, intron 6 of 8)	72854.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	2.37365238550241	2.30507592044096	2.48022964519866	2.36204404099448	2.29251220486176	2.22905729053116	-0.584909044833537	0.48810160191	1
Merged-chr12-55820415-3	chr12	55819896	55820896	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003719, intron 1 of 39)	intron (NM_001003719, intron 1 of 39)	1120.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	5.01932641046497	5.19489302377095	5.28417006847666	4.99330504821596	4.61749292283018	4.99312358367009	-0.640323343347218	0.10327298376826	0.428371806250717
Merged-chr10-51498517-4	chr10	51498011	51499011	+	912.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	7613.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.52804234718613	4.57972994637309	4.86515081812185	4.74290483804292	4.98479175498772	5.03201607635518	0.617134520354944	0.13051021173424	0.482772903795795
Merged-chr15-51733750-5	chr15	51733230	51734230	+	839.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	131731.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	4.2693916848558	4.56882127766444	4.52339306215536	4.48411941978662	4.52526248026041	4.54886734691557	0.150085600862663	0.72967793957423	0.930635866770147
Merged-chr3-90085560-4	chr3	90085137	90086137	+	949.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	6116.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	4.89286846968267	4.95541519629794	4.7800314846591	4.85566688592512	4.84019373748158	5.06263736540105	0.0689978803668953	0.857926890259987	0.966785186918462
Merged-chr13-73771057-2	chr13	73770557	73771557	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	7360.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	3.39223903232831	3.35379686657919	3.84563204567007	2.99577756555502	2.96836459003006	3.43885736346655	-1.61112471820388	0.022233673518049	0.173190367542578
Merged-chr7-34166981-4	chr7	34166463	34167463	+	664.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016682, intron 1 of 16)	RSINE1|SINE|B4	1566.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	2.84086909100691	3.23518574543284	2.86460866001001	2.95982753086942	2.95125309277148	3.23396299361174	0.233307763832669	0.746523384349986	0.936300236930265
Merged-chr16-85114881-3	chr16	85114380	85115380	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	58827.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	6.41246811496721	6.56205032007144	6.21572777629832	6.42018190694712	6.65334577625407	6.21091781260245	0.0665721354826319	0.821288314722977	0.957943285366418
Merged-chr1-9859156-4	chr1	9858660	9859660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037759, intron 1 of 16)	intron (NM_001037759, intron 1 of 16)	10879.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.28622185189655	4.49659093892479	4.43184046517162	4.38869723214396	4.62568232341699	4.62170949338815	0.358376214381408	0.411328159634239	0.783877099438722
Merged-chr18-36376414-2	chr18	36375914	36376914	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	27790.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	3.84245976172294	3.86811686606992	3.52956824725875	3.59682417713065	3.43048754738949	3.9129995587069	-0.359908743742348	0.540405470656783	0.85632302227606
Merged-chr8-72325593-3	chr8	72325029	72326029	+	830.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6467.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.02830476921922	3.97262428059307	4.20611671240771	4.12594771226852	3.75184887847427	3.99833529041499	-0.310271259569657	0.544104738994004	0.857551302506722
Merged-chr9-64281576-4	chr9	64281056	64282056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324557)	promoter-TSS (NM_001324557)	-29.0	NM_025372	66131.0	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	4.65942470633777	4.63498225986028	4.8413640694891	4.54910585868522	4.63859208317669	4.83465997785793	-0.0837360910161469	0.838444064088796	0.962518552953479
Merged-chr6-116140975-4	chr6	116140452	116141452	+	918.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	52422.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	4.52840700265446	4.38384145169577	4.05171081146959	4.24275777111858	4.38377048178142	4.45241525692865	0.0348768218238015	0.941267329105993	0.986929673509898
Merged-chr4-125146361-4	chr4	125145860	125146860	+	900.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18479.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.15610082888828	4.96763527771099	4.98189867688515	4.70621770336207	4.61013638221701	4.78878548915244	-0.77374827797008	0.0466088720910382	0.273157199311941
Merged-chr19-8018787-4	chr19	8018284	8019284	+	730.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR50A|LTR|ERVK	-52757.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	3.60234011504694	3.61181841766125	3.7491360182778	3.62927647635223	3.65361671923908	3.55663595422209	-0.119151893990805	0.828277831123032	0.959665558818164
Merged-chr11-118484765-1	chr11	118484265	118485265	+	563.0	f1_balb.idr	intron (NR_153103, intron 8 of 13)	intron (NR_153103, intron 8 of 13)	7933.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	4.29560647534875	3.96002345672877	4.59064633483391	3.90890386201545	3.9384667377352	4.68970908700381	-0.201470022266612	0.724335079316226	0.929317175139469
Merged-chr8-45331459-2	chr8	45330959	45331959	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	1737.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	4.70780641232669	4.28593536962868	4.31194858052069	4.49320138561124	4.53379801219386	4.67743019408493	0.269540975327187	0.550542432485437	0.860709619458349
Merged-chr5-92526849-2	chr5	92526349	92527349	+	731.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-21192.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	2.90409532528975	3.12916600110727	3.11852182859711	3.15106640715405	3.0843511008894	3.19031726417079	0.383283017701901	0.560267704324868	0.865206445804495
Merged-chr2-127246274-2	chr2	127245774	127246774	+	804.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025296, intron 4 of 6)	intron (NM_025296, intron 4 of 6)	1542.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	3.3570296439575	3.34794853573378	3.24359111603116	3.20041276715754	3.27366368767401	3.53326841347155	0.0664901817362765	0.914398655924171	0.980912729144991
Merged-chr9-104663667-3	chr9	104663170	104664170	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	94187.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.53073614596605	4.08900957914995	4.14183021585748	3.26347744635784	3.2922673875735	3.40369985922933	-3.61621408001627	1.30728764534309e-07	9.05718487874338e-06
Merged-chr5-124075736-3	chr5	124075242	124076242	+	758.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20056.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	4.96881201801924	4.43791416253115	4.16495151571126	4.10205369329312	3.95295099786196	4.08166291110102	-1.42347192532926	0.00587597665745125	0.0687759552276275
Merged-chr17-25135795-2	chr17	25135306	25136306	+	911.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317404)	promoter-TSS (NM_001317404)	-825.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	4.08116078202233	4.23234250406646	4.14747999929246	4.72333107909478	4.95192449659344	4.82009660228994	1.71646050853273	9.79143425746277e-05	0.00278253299759209
Merged-chr7-127771371-2	chr7	127770871	127771871	+	691.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	1556.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	3.50650520773157	3.24284479550275	3.29966469351159	3.15423924590092	3.4174528682507	3.31404952648915	-0.209292621150643	0.739153895783451	0.934160003144178
Merged-chr15-6584527-2	chr15	6584027	6585027	+	815.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	B3|SINE|B2	4680.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	4.92938870079598	4.97100955050804	4.71230296593689	5.31174941799774	5.11557033646901	5.37525265962128	0.79710908818939	0.0354150873761313	0.231015610591791
Merged-chr2-125667300-3	chr2	125666797	125667797	+	957.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 5 of 11)	intron (NM_199022, intron 5 of 11)	-5803.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	2.64625782082006	2.82853739333462	2.93256904001114	2.54457525677703	2.50322627779339	2.58884078754129	-1.53535602267729	0.0516341405277878	0.289864631293764
Merged-chr16-4877367-4	chr16	4876877	4877877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	2474.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	6.52202754976982	6.76591579170817	6.90293279651567	6.7566722098832	7.16775234246028	6.56685228350326	0.208375382954551	0.482596199187117	0.825742639151998
Merged-chr6-88903919-4	chr6	88903418	88904418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1667.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	7.78610012759342	8.04178428612237	7.63255410484487	7.7608557604423	7.88238351645296	7.39619672206198	-0.189698522988116	0.461465324229771	0.814992635038861
Merged-chr4-133206115-3	chr4	133205689	133206689	+	837.188904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	6347.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	3.47966946474953	3.23459699869246	3.55525396957177	3.27624798430169	3.08933337344915	3.24646408989072	-0.904283187324594	0.153024363866843	0.521667128344488
Merged-chr12-111671684-4	chr12	111671218	111672218	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021273, intron 2 of 7)	CpG-3541	620.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	7.82112118341178	8.01982761759926	7.8187201922428	7.58403788302304	7.86306740840526	8.10429308114152	-0.0397337971703168	0.871239809828082	0.970222087171093
Merged-chr6-56894492-1	chr6	56893992	56894992	+	598.0	f0_balb.idr	intron (NM_026004, intron 1 of 8)	intron (NM_026004, intron 1 of 8)	7394.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	3.56932888428586	3.61052333136611	3.67539637277636	3.53556310265858	3.63716272780378	3.9824375681373	0.362752890757372	0.520112213022259	0.846172588154387
Merged-chr18-67698668-4	chr18	67698182	67699182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25939.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	5.47077738847529	5.62207232048044	5.85649306573247	5.66617726633176	5.87572839743906	5.84640882932183	0.277179996431794	0.391971461477377	0.770782330002482
Merged-chr15-6565374-4	chr15	6564869	6565869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14478.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.81585874934301	6.53042536357023	6.55139619579758	6.67544626101846	6.61061059032728	6.80288603430202	0.0785624021828091	0.768091209505725	0.942808405195185
Merged-chr13-34082742-4	chr13	34082269	34083269	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4761.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	5.44772946643322	4.85520193709268	4.96762810313037	5.16363215492376	4.94668511954536	5.13920449688687	-0.0882910845885331	0.827452558239246	0.959467071709035
Merged-chr4-149789422-2	chr4	149788922	149789922	+	617.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15155.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.62435072491302	5.56166674599104	5.31991707526739	5.09116854802113	5.17880937679241	4.99898111668944	-0.831508047754917	0.0190481259921003	0.156399888252485
Merged-chr4-43578188-2	chr4	43577688	43578688	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-547.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	4.98042838104392	5.0789377438173	5.5534624650282	5.20853010451696	4.96102509909135	5.25374894951623	-0.155051751239816	0.69439866158241	0.919210273513843
Merged-chr2-30134629-4	chr2	30134136	30135136	+	884.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 1 of 11)	intron (NM_146252, intron 1 of 11)	890.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	7.44374343010257	7.44645884471993	7.63275486253438	7.77077909902795	8.06959530870442	7.63349937756896	0.491452892145266	0.0424458664465174	0.258213170908409
Merged-chr4-108461750-4	chr4	108461261	108462261	+	968.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175472, intron 2 of 30)	intron (NM_175472, intron 2 of 30)	2335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	6.34103919621297	6.62854059412179	6.3120423803246	6.75512830776915	7.27105550312897	6.567404593947	0.742825552487761	0.0176107633450895	0.148390521156274
Merged-chr11-115705716-4	chr11	115705222	115706222	+	758.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	RMER15|LTR|ERVL	2875.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	5.58734832305255	5.57956419132827	5.64138215014381	5.83563129045375	6.14793233872239	6.04604658723301	0.752223960985623	0.0150041295811948	0.132758785005535
Merged-chr15-101308999-3	chr15	101308497	101309497	+	696.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15785.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	2.60514077120744	2.59591713547173	2.72700583547171	2.64544835674663	2.42712081180711	2.7396643093577	-0.204974218261714	0.792037901199891	1
Merged-chr14-76505526-1	chr14	76505026	76506026	+	587.0	f0_balb.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1016.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	5.45850187238724	5.71102346795194	5.15708728600082	4.29106304265059	4.20559169109862	4.46274592141805	-2.69241744702934	4.67271473477187e-10	5.38514193422296e-08
Merged-chr14-61698907-3	chr14	61698417	61699417	+	894.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16544.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.21265233081509	4.20072192195011	4.18935383530347	4.58922011288267	4.38472481347364	4.78850857194016	0.996168407074765	0.028435130233281	0.201878806167816
Merged-chr19-16110791-4	chr19	16110241	16111241	+	802.674988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22090.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.27807141578936	3.56617944122861	3.62860702562928	3.89863023296926	3.795509162492	3.90111747136682	1.26325786136111	0.026980999465815	0.19557151161254
Merged-chr1-165724395-4	chr1	165723876	165724876	+	880.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-16282.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	4.91381000507471	5.1186103075128	5.11265000532378	4.98036760035216	4.9848999061234	5.11036759144354	-0.0586791658118719	0.874021354768918	0.970541268701535
Merged-chr6-124919867-4	chr6	124919351	124920351	+	879.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152158, intron 1 of 1)	intron (NR_152158, intron 1 of 1)	-1905.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	3.05323517577428	2.72834944660099	2.81846070522659	3.04216997650994	3.02562411984156	3.07668054530198	0.800864663928194	0.259397986825695	0.656962698323131
Merged-chr10-81128214-2	chr10	81127714	81128714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-8057.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	2.85147573650001	2.86620771746454	2.82972773277215	2.94945032231817	2.83516877857043	3.02227057206614	0.40816118835809	0.556129225358122	0.86357390983939
Merged-chr16-58686324-3	chr16	58685830	58686830	+	804.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16122.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	4.12344596887192	4.41551998208336	4.38731049319618	4.23661575429069	4.33356624987873	4.18510308891816	-0.146805907342256	0.751864419893739	0.938016588905039
Merged-chr7-102021622-2	chr7	102021122	102022122	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-3467.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	4.58157545449999	4.79753529450926	4.59019949271587	4.5849027440275	4.76258018034711	4.61547765403391	-0.00669987972540427	0.987094621639643	0.997161899445921
Merged-chr17-13544206-4	chr17	13543725	13544725	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	RLTR11B|LTR|ERVK	9869.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	3.8423939770204	3.74905417582755	4.06233935236968	4.05251919278391	4.10048138280791	4.17526859815749	0.680736148664012	0.173906186714525	0.553140727918843
Merged-chr13-3544146-2	chr13	3543646	3544646	+	738.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	6071.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	4.38177472238604	4.2549841329029	4.39084638294698	4.59936889678935	4.22910124834138	4.62075607491689	0.370530804868421	0.416193582425801	0.787077788278962
Merged-chr4-145234057-4	chr4	145233592	145234592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	12778.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	7.2904563441544	6.99697781853094	7.24294948610647	7.38562817366722	7.36938233278343	7.53158121114163	0.366561296537733	0.12807643662225	0.478707399984916
Merged-chr2-127587277-4	chr2	127586806	127587806	+	983.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029963)	promoter-TSS (NM_029963)	-120.0	NM_029963	77721.0	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	5.49426078633941	5.76364779486369	5.96870062146132	5.59386543466734	5.60251026640293	5.67104432201748	-0.232330477169395	0.482427065119002	0.82559879164146
Merged-chr10-127560793-2	chr10	127560293	127561293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-26234.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.73095309413383	2.68974774362214	2.8597871439428	2.72824641333222	2.74940348333509	2.93186024825686	0.227164002692585	0.753098242637525	0.938549578325581
Merged-chr7-27361591-4	chr7	27361081	27362081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032610, exon 33 of 36)	exon (NM_032610, exon 33 of 36)	-5573.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	4.30766839368291	4.18235066355209	4.19356082713533	4.64095089434391	4.08255261165938	4.11564668399062	0.20858835690914	0.674801709278985	0.911865018776908
Merged-chr2-27730220-2	chr2	27729720	27730720	+	708.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	19637.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.13950810788524	5.14152811134823	5.37659842951876	5.07882111248192	4.90360085420922	5.16628549701882	-0.357125512921623	0.332038470688872	0.723328544064292
Merged-chr7-19806484-2	chr7	19805984	19806984	+	586.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9675.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	2.96788041569278	2.65822677656062	2.97575653174241	3.01506421701495	2.80095040224638	3.10561968101053	0.488585845946697	0.502829236249681	0.836691193058519
Merged-chr9-119983835-4	chr9	119983318	119984318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-39.0	NM_001357562	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	8.21305184951538	8.12339193746781	7.7153453833531	7.99061716091723	8.05726744694367	7.92603607935113	-0.0689285579190628	0.772733255591497	0.943848608021176
Merged-chr8-115612327-4	chr8	115611819	115612819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_B_Mam|LINE|RTE-X	94575.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.54782186536498	6.94102665787124	6.78099372626911	7.10630986185374	6.99319692148125	6.88455570443994	0.358424061165488	0.175004452085427	0.554700648631989
Merged-chr4-139206009-4	chr4	139205504	139206504	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	B3A|SINE|B2	11893.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.53700992121109	5.40848827408482	5.4953519421223	6.30124294912314	6.17749554110164	5.98660243727427	1.22766200224929	7.06993172668725e-05	0.00210775664318951
Merged-chr12-73585415-3	chr12	73584867	73585867	+	750.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008856, exon 1 of 14)	exon (NM_008856, exon 1 of 14)	571.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.53445221111141	6.85242692599212	6.65877586558506	6.50039002403206	6.46882313884353	6.35998130594431	-0.388780412939842	0.149921156655669	0.516526835452151
Merged-chr8-95321026-2	chr8	95320526	95321526	+	767.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_199455, intron 7 of 7)	intron (NM_199455, intron 7 of 7)	9428.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	2.00115074017904	2.00705040520724	2.20708163807648	2.04304665614221	1.87459840306623	2.01858473459802	-0.742802790087427	0.431874118954318	1
Merged-chr10-58449356-2	chr10	58448856	58449856	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011240, intron 1 of 28)	B2_Mm2|SINE|B2	2504.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	3.99206521989996	3.8020088257263	3.83589494934934	4.11711221900766	3.9923974120973	4.00768403937032	0.47820883461895	0.340533115600544	0.730173453949955
Merged-chr10-52418733-4	chr10	52418258	52419258	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	1211.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	7.44277172899463	7.75625439473029	7.43859211874939	7.31310862299937	7.30580031573974	7.32124293684722	-0.363415361419416	0.126843521489477	0.475937758662356
Merged-chr2-6471951-4	chr2	6471477	6472477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	119241.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	5.7268913752056	5.88846689302933	5.0587558712994	5.07538354849599	5.02707767350004	5.12587414065341	-1.07312761686974	0.00678302734537313	0.0763944422514629
Merged-chr9-32476550-2	chr9	32476050	32477050	+	631.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	64902.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.78123555163372	4.96876833707439	5.29574804212378	4.92986414978529	4.85418503020964	5.38575752423325	0.0929411808714381	0.823861333093775	0.958451755471188
Merged-chr11-110562536-4	chr11	110562049	110563049	+	837.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83209.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.71413860897011	3.6958483836319	3.74361248709644	3.79084440324538	3.56723355495302	4.04987599658871	0.293819183731813	0.594978450447408	0.87924603206665
Merged-chr7-83665251-4	chr7	83664745	83665745	+	760.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 10 of 18)	intron (NM_001360088, intron 10 of 18)	-9750.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	2.99321817322964	3.06404129031905	3.27261326544973	3.13987238335786	2.83378189312311	3.17899935045811	-0.249164019321338	0.717161286930234	0.926979087819795
Merged-chr10-26785718-2	chr10	26785218	26786218	+	815.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	13206.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	2.993614516132	3.18195392801945	2.74447128230945	3.18134595433613	2.91711699870599	3.19675358353644	0.49826896719696	0.501324960616053	0.835571726918265
Merged-chr14-8093587-4	chr14	8093083	8094083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4628.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	6.50486989915677	6.7323914562856	6.661740379918	6.83070914051735	6.84029878647498	6.81404627367018	0.302627285419883	0.233337738485524	0.629682827928185
Merged-chr9-110663051-4	chr9	110662556	110663556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	L1MB4|LINE|L1	6553.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.21068383727621	3.9585554395303	4.30513634826264	4.66121445267491	4.27952121705062	4.69415314818467	1.02463691386402	0.0322078171017261	0.218023758981486
Merged-chr9-20886271-2	chr9	20885771	20886771	+	583.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1904.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	3.1006985798324	3.20436809494516	3.47669811221041	3.32684906556174	3.08470459635539	3.4435088476544	0.0957932216695807	0.882865042507312	0.973321423742277
Merged-chr2-132606359-3	chr2	132605879	132606879	+	800.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	8183.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	4.69112023058934	4.62310162746025	4.66818377466703	4.22265207258814	4.36616900157402	4.2644465621023	-0.935353241195533	0.0315483444297621	0.215142077237881
Merged-chr9-58560416-4	chr9	58559910	58560910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19470.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.69984243071812	4.86552320000417	4.6213108679263	4.21306526947153	4.45338839761875	4.2412670508893	-1.04506505145588	0.0188093286705317	0.155266529763651
Merged-chr8-69022958-2	chr8	69022499	69023499	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-65737.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.05738090556195	3.81613797979943	3.90730237974177	4.56860041258787	4.78382372655547	4.74257092125048	2.08310635781182	1.37158507473991e-05	0.000526658287489424
Merged-chr15-83021443-3	chr15	83020972	83021972	+	860.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	1666.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.31677765798345	4.1894862312317	4.84618257982584	4.54021154736046	4.68531384038972	4.62050856711761	0.365947327619857	0.435050266513618	0.798753078814766
Merged-chr9-121839445-4	chr9	121838941	121839941	+	911.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	20.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	2.70979876943461	2.60518338875229	2.57948548690099	2.95678464539475	2.82453984703545	2.84874601539341	1.29292781183659	0.0841676285877341	0.383836881804084
Merged-chr17-66121763-3	chr17	66121215	66122215	+	768.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1805.0	NM_001003919	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	3.2430398704689	3.46079425470863	3.79197414348354	3.32448411008978	3.04091589026764	3.41757568664312	-0.953524145817866	0.149172614033471	0.51537803021029
Merged-chr19-16048086-3	chr19	16047640	16048640	+	754.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	63065.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.62372622324101	5.02867845858388	4.60195128750736	5.17506615344231	5.16534289094874	4.71521571619535	0.584898251623823	0.172898528607857	0.551631164432615
Merged-chr2-52931989-2	chr2	52931489	52932489	+	883.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	74121.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.24917026642542	3.16357354451341	3.21268579605005	3.14610227496711	2.91345248541759	3.16985599658975	-0.586255943765696	0.371532160616065	0.755652770238368
Merged-chr4-128983478-4	chr4	128982990	128983990	+	949.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9734.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	7.22109254738243	7.09961588104541	7.06914826039605	7.30316564096767	7.51560165769524	7.17851138927036	0.319932702398822	0.190026670327498	0.576208563267027
Merged-chr8-106150336-4	chr8	106149842	106150842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133792)	promoter-TSS (NM_133792)	-12.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	8.29356565052802	8.29847000602902	8.19381644906733	8.18591192117114	8.5575519360149	7.90908252563533	-0.0122078232626527	0.961139221874171	0.990445004999703
Merged-chr2-60315983-3	chr2	60315490	60316490	+	962.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013825, intron 27 of 34)	intron (NM_013825, intron 27 of 34)	-31506.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	3.96470297440926	4.21698291126041	3.74733529456202	4.07666762470509	3.94052795617405	3.97970716996664	-0.00593686189085768	0.990933185642876	0.998113069044251
Merged-chr8-45332793-2	chr8	45332293	45333293	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133969, exon 1 of 11)	exon (NM_133969, exon 1 of 11)	403.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	7.58935927068088	7.85858073871553	7.87698770223287	7.76150734725622	7.96131296008285	7.7695507144038	0.0846938409501223	0.712815897292123	0.92531822516521
Merged-chr3-69155544-1	chr3	69155044	69156044	+	553.0	f1_balb.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	24311.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	7.14801647734066	7.2733253292928	6.80753847127305	7.28300814314001	7.18862065604361	6.9577159995146	0.0815454850823314	0.759250922116415	0.940311236380535
Merged-chr2-154550284-2	chr2	154549784	154550784	+	904.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029305)	TTS (NM_029305)	1380.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	3.92974254046228	3.83167497712159	3.61818173285632	3.73737787379948	3.77694810460215	3.51563711008164	-0.383999739179107	0.492641889661538	0.831177181177099
Merged-chr8-13159137-4	chr8	13158596	13159596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	-65.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	8.04715368767433	7.83328507915434	7.57726360048838	7.95930800666938	7.6116213033315	7.66227023989518	-0.123854002057798	0.623079938083637	0.891251075175817
Merged-chr10-21993373-6	chr10	21992873	21993873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161850)	promoter-TSS (NM_001161850)	-517.0	NM_001161850	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	8.00812628620261	8.00939416437935	8.09695099356075	8.03294689463434	8.18305763285892	7.5770838852828	-0.100730224641137	0.686485386006283	0.916761528494478
Merged-chr5-121832832-2	chr5	121832332	121833332	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	3272.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	4.51685431562659	4.1795958657464	4.63304187588444	4.53208459502872	4.27998310930427	4.6982009391054	0.138904814949306	0.765852691267359	0.942315053650124
Merged-chr4-133754418-4	chr4	133753917	133754917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-806.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	6.8396761181074	6.11422136163743	6.54361111833624	6.51177547657069	6.23000817507715	6.61930347965615	-0.125370064516187	0.699685942568122	0.920677322048879
Merged-chr11-30954003-4	chr11	30953457	30954457	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023906)	promoter-TSS (NM_023906)	174.0	NM_025745	66753.0	Mm.294641	NM_025745	ENSMUSG00000020311	Erlec1	4933407N01Rik	endoplasmic reticulum lectin 1	protein-coding	5.77408038745069	5.5778053235686	5.70752352628387	5.88574725145104	5.73753579615871	5.63356299948233	0.132879513541092	0.673663991455363	0.911599177118521
Merged-chr3-75751064-2	chr3	75750564	75751564	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95333.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	2.32528760528902	2.22597011952073	2.39500091394664	2.18454705728696	2.26699869291429	2.07234944462345	-0.942075586267057	0.3010956537571	1
Merged-chr3-135420735-4	chr3	135420236	135421236	+	973.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	2697.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	7.2970194930296	7.49475386569507	7.11227457215441	7.54043332205184	7.81565966397061	7.29623748793015	0.381454621214798	0.150310991175183	0.517246479850651
Merged-chr8-88655501-4	chr8	88655002	88656002	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8155.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	3.35740179638308	3.78147998101964	3.59174097790822	3.54846011453465	3.72469675897843	3.76562471012884	0.309130008378083	0.595649481361183	0.879568440346791
Merged-chr9-101034892-1	chr9	101034392	101035392	+	1000.0	f0_c57.idr	promoter-TSS (NM_025835)	promoter-TSS (NM_025835)	-8.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	8.47693730538378	8.88603701312565	8.30184388449685	8.3159088111034	8.3416635194658	8.1518408517527	-0.431588987854804	0.0779690829769245	0.368721310391812
Merged-chr12-80116490-3	chr12	80115984	80116984	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3471.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.33273405596223	7.21140320929128	6.97157618396189	7.25361361124959	7.44017196916831	7.1515031183621	0.157910251550016	0.530918172300614	0.851363932161699
Merged-chr4-6517806-4	chr4	6517288	6518288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63517.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	2.7923665733844	3.0173438144359	2.81135674694996	2.86294638212111	3.0824838556053	3.12493702295166	0.686035054234597	0.334305002279373	0.724883973366998
Merged-chr4-145268455-2	chr4	145267955	145268955	+	943.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009401)	TTS (NM_009401)	-21585.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.92962057033636	4.93530168928329	5.16740220736421	4.78973857323527	5.1385223094608	4.84914591542285	-0.131502276823429	0.738287085503717	0.934032187674406
Merged-chr2-167686838-3	chr2	167686373	167687373	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2042.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	3.77175688592187	3.83151182144929	4.19893960792302	3.87487836827878	3.59914252182289	4.34479343406397	0.0818150588511047	0.888210176607817	0.97401529899353
Merged-chr1-134679630-4	chr1	134679126	134680126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009307, intron 2 of 9)	MLT1G1|LTR|ERVL-MaLR	-29674.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	3.80528601045418	3.43195788328017	3.57260205330898	3.65960348804156	3.73894496987523	3.85037925987567	0.450852945835069	0.425221997201137	0.792988748085012
Merged-chr6-87187080-4	chr6	87186594	87187594	+	904.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	82348.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.10472804298831	3.10683087233812	2.87277026637224	3.19289198922891	3.19566374443356	3.13607356798975	0.601582390508725	0.369935060418715	0.754412933368963
Merged-chr1-54476696-2	chr1	54476196	54477196	+	744.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001163314, exon 27 of 27)	3' UTR (NM_001163314, exon 27 of 27)	-37670.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	3.29390260165209	3.0607059485994	3.35156919002937	3.43377865496567	3.45311714170072	3.30976353434169	0.666467068147528	0.284857594727462	0.682457480121006
Merged-chr12-33136676-2	chr12	33136176	33137176	+	732.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 3 of 5)	intron (NR_015602, intron 3 of 5)	10910.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	3.11469769077713	3.03178165055306	3.24745432987889	3.03669102242201	2.88659378790764	3.37079349600592	-0.107627962267614	0.875363666923476	0.970995160803709
Merged-chr9-45229535-4	chr9	45228997	45229997	+	929.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-25422.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	2.9036310789929	2.76643141227354	3.05109931103159	2.89617613792188	2.82429205784873	2.82847261782686	-0.282212385196363	0.689835045863813	0.917495512399022
Merged-chr5-146785570-4	chr5	146785061	146786061	+	846.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	(GGA)n|Simple_repeat|Simple_repeat	9395.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.91830842933189	5.92408331625615	6.24909983233685	6.08753206190266	6.36546390254359	6.16787577436299	0.324025363174465	0.28161964964813	0.679734270520554
Merged-chr19-41379830-3	chr19	41379352	41380352	+	782.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	5218.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.72628468503233	5.4366329143358	6.05264733623543	5.94392306753304	6.02316432372243	5.70895740807686	0.278795932852814	0.416144138808008	0.78703200622012
Merged-chr6-115676602-4	chr6	115676090	115677090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356334)	promoter-TSS (NM_001356334)	45.0	NM_001356333	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	8.69768257429499	8.86863805897953	8.74895048373569	8.49721236407964	8.69623287260988	8.64399393170183	-0.218682708649673	0.282156162497807	0.680058221160313
Merged-chr7-38107983-1	chr7	38107483	38108483	+	1000.0	f0_c57.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-493.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	7.68804918158322	7.88549262869778	7.61489577843441	7.88949857058438	7.74444041361507	7.35369547554909	-0.0702523599340497	0.781751809831486	0.946284883776141
Merged-chr14-50931829-4	chr14	50931336	50932336	+	931.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-987.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	7.0398447937457	7.38230340939125	6.90156474645513	7.06118247516257	7.35582428286104	6.71972220268586	-0.0711415000442973	0.810180337788563	0.954976703432846
Merged-chr7-127904802-2	chr7	127904302	127905302	+	624.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009739, exon 2 of 12)	5' UTR (NM_009739, exon 2 of 12)	729.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	3.87177975970128	3.59867610672485	3.75299760654106	3.9498702532881	3.83097753544884	4.06667705821975	0.634873898587692	0.230629721016394	0.626381219532661
Merged-chr17-26705623-4	chr17	26705089	26706089	+	785.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10061.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	4.51666284951082	4.47713677548316	4.75276245620629	4.42751013654857	4.28083712991122	4.19093161600972	-0.697170201745369	0.119483073661443	0.462083733545572
Merged-chr6-131243833-2	chr6	131243333	131244333	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008462, intron 3 of 7)	intron (NM_008462, intron 3 of 7)	3529.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	5.24037679102689	5.49416061537275	5.54160235104812	5.27340474905477	5.25574728628963	5.24812490360306	-0.331457162988828	0.338562479346683	0.728543936569625
Merged-chr8-128680777-4	chr8	128680302	128681302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4852.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.73943326320718	6.53795128865783	6.6974009309205	6.70308998713999	6.9580290057634	6.80242503683161	0.269745893508523	0.299463513587669	0.696241066794673
Merged-chr3-100530385-7	chr3	100529880	100530880	+	985.253967	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41188.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	5.61457080574533	5.61768956693509	5.06964398890127	6.27599803744291	6.55136742128848	6.14527237138124	1.51651084541194	2.07668399462217e-05	0.000753583610224689
Merged-chr9-118621536-2	chr9	118621036	118622036	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	RMER30|DNA|hAT-Charlie	14827.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.73105687379793	3.66028451955696	4.1524706122601	3.60270161207739	3.4317249170533	3.66766579843755	-0.98267777268414	0.0894950456123409	0.397460832795159
Merged-chr12-55465738-4	chr12	55465239	55466239	+	935.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26908.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	5.51821601346254	5.75675646302996	5.81854854562	5.68196184228939	5.62236112225892	5.47513915875099	-0.180406166105185	0.579369584324944	0.87250443698034
Merged-chr7-101663656-4	chr7	101663170	101664170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009191)	promoter-TSS (NM_009191)	-98.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	5.56046419118701	5.62199962033892	5.7847237797515	5.67265774819092	5.64805988756189	5.46541726529875	-0.0866784226557586	0.787977611963545	0.948776817409006
Merged-chr17-88581726-4	chr17	88581248	88582248	+	933.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 19 of 21)	intron (NM_028658, intron 19 of 21)	-44807.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	3.64551156783728	3.63819594808349	3.473434818162	3.2110703930455	3.07563809537226	3.79654761427018	-0.70264229283602	0.299673876843095	0.696379589028967
Merged-chr18-56451822-4	chr18	56451313	56452313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	19681.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.87093719761648	4.59804236514537	4.72821121315752	4.41637266999393	4.54425163749894	4.59646651501941	-0.523409284127098	0.211824730704021	0.604236512672024
Merged-chr16-17927280-2	chr16	17926780	17927780	+	826.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_153150, exon 4 of 9)	exon (NM_153150, exon 4 of 9)	939.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	3.66981803254004	3.83836968688232	3.75351699027812	3.76437969794121	3.60189939613376	4.0124745845831	0.121798164449915	0.8239086445558	0.958451755471188
Merged-chr17-35001020-4	chr17	35000544	35001544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033075)	promoter-TSS (NM_033075)	137.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	7.98615199135178	7.97191705087145	7.67786576737511	7.96968708052063	8.07893503937647	7.64843490577028	0.0392182168160648	0.872061157237179	0.970261003150518
Merged-chr8-47675234-4	chr8	47674722	47675722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-63.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	8.13389355238485	7.99777986990339	7.8482372394044	7.94616417106986	7.96267442245506	7.87988867274312	-0.101798649748508	0.64031226781319	0.898436868574414
Merged-chr10-81570970-4	chr10	81570471	81571471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4316.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	5.27254400795035	5.88095898731588	5.90790188266072	5.57810241610719	5.90370233672722	5.58846776408536	-0.0155832833724108	0.966263795675357	0.992284576568462
Merged-chr9-107982189-2	chr9	107981689	107982689	+	895.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_023738, intron 21 of 23)	(TG)n|Simple_repeat|Simple_repeat	3727.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	5.47522960098112	5.29663055515602	5.5397913832671	5.48618070715295	5.42627293323574	5.7316334833634	0.209415708484936	0.536255612745643	0.85392789486322
Merged-chr10-13268274-4	chr10	13267747	13268747	+	836.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	GA-rich|Low_complexity|Low_complexity	56042.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.00214223443071	4.05015779203482	4.46928861489924	4.22797247270978	3.91125800498857	4.64401210793381	0.280053766008854	0.602458740581421	0.882349532183277
Merged-chr11-80144345-1	chr11	80143845	80144845	+	669.0	f0_balb.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2192.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	5.06503104445661	5.0336968387474	5.01641977754791	5.06478975340943	5.1554759638718	5.30904786275468	0.28183845711333	0.435413367748465	0.799018051377594
Merged-chr16-36041140-4	chr16	36040624	36041624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027113)	promoter-TSS (NM_027113)	-66.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	6.4228557799092	6.84852058042753	6.78949959701054	6.62888843445179	6.8395663327671	6.69377639852533	0.0458775219713646	0.868380485126771	0.969642939011354
Merged-chr14-75754605-4	chr14	75754113	75755113	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177381)	promoter-TSS (NM_177381)	-120.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	7.0958089702766	7.1027304811334	7.03040394168009	7.22816519237952	7.03545959496484	7.034746493248	0.0366869781051987	0.878142258525784	0.971823068448181
Merged-chr12-51811916-4	chr12	51811412	51812412	+	766.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144788, intron 2 of 42)	intron (NM_144788, intron 2 of 42)	17624.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.34785895707196	4.09436593850788	4.28518642582205	4.51636815170929	4.32693806456821	4.3532690082065	0.413426216003461	0.364459454483119	0.749825494229833
Merged-chr2-22950288-2	chr2	22949788	22950788	+	656.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 8 of 10)	intron (NM_001077190, intron 8 of 10)	54766.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	3.15366120899558	3.18518622767574	3.26405569669176	3.27531028215393	3.14257641931098	3.22185883574685	0.0556306440856131	0.929027969679529	0.983986741644278
Merged-chr7-126941309-4	chr7	126940812	126941812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172747, intron 2 of 5)	intron (NM_172747, intron 2 of 5)	7847.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	4.3977111391299	4.11748160427327	4.58886262124649	4.69114804613467	4.22372520662234	4.4094817573865	0.203631716475096	0.671403948076253	0.910510287522677
Merged-chr9-44512208-4	chr9	44511746	44512746	+	969.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_030256)	TTS (NM_030256)	13110.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.53018826813298	5.63500611291066	5.95848622230379	5.58520107694186	5.58409960309344	5.93131135447852	-0.0168947281398774	0.960291236912457	0.990368404469599
Merged-chr2-165980264-1	chr2	165979764	165980764	+	771.0	f1_c57bl6.idr	Intergenic	Intergenic	-12373.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	3.63153883153595	3.56657898169555	3.92306430181251	3.58275723167416	3.55830635052171	3.80381986550747	-0.207840245225749	0.711918835195521	0.924889808252387
Merged-chr15-25860530-2	chr15	25860030	25861030	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	17232.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.05503998839024	3.76449388912873	3.87978976181901	3.93254389701106	4.48593431394955	4.00281116280944	0.781749984815465	0.146437424735351	0.510394244878424
Merged-chr11-115626298-2	chr11	115625855	115626855	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252395, intron 1 of 7)	intron (NM_001252395, intron 1 of 7)	1940.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	3.26242329487472	3.23864351861927	3.00587083708645	3.6618528053533	3.57131910981581	3.39814886622257	1.45278078433304	0.0261665370206693	0.192083388832453
Merged-chr13-23556228-4	chr13	23555684	23556684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145713)	TTS (NM_145713)	1152.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	6.69329287586881	6.8673624387235	6.82609223166567	6.96174915438883	7.28685923015142	7.091081728172	0.503234044182333	0.04769770194198	0.276650661033617
Merged-chr18-65507034-3	chr18	65506523	65507523	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-73207.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.91485928825065	4.97927614646786	4.96195999934005	4.08053950125178	4.04727354216962	4.05622135155953	-2.31421783698971	3.83753184870862e-07	2.33245690334074e-05
Merged-chr4-128628474-2	chr4	128627974	128628974	+	873.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9855.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	2.83981311526823	2.76196423402731	2.55510172632697	2.68191288721467	2.67959504672082	2.82180719857789	-0.0146623940022223	0.984577331212158	1
Merged-chr10-119056724-4	chr10	119056216	119057216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6217.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	7.73141451627222	7.34140162213716	7.18385377725209	7.34308526783851	7.53263474804683	7.1109599989537	-0.145480329708336	0.59646515816757	0.879914064265073
Merged-chr5-124628496-3	chr5	124627994	124628994	+	798.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-558.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	6.20523378051157	6.36842748948288	6.53711217431024	6.51163424456827	6.55916643287364	6.34101387484682	0.18149828025429	0.513987779425484	0.842918670363435
Merged-chr1-125561448-3	chr1	125560951	125561951	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028787, intron 1 of 15)	intron (NM_028787, intron 1 of 15)	449.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	7.56676698370761	7.52345223448904	7.50387948575044	7.55035027032745	7.49660928807005	7.21439477193986	-0.141144134252991	0.546765366115834	0.85898091530532
Merged-chr1-136661121-3	chr1	136660619	136661619	+	728.799988	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22277.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	3.29877427034948	3.29594442392047	3.24172188350921	3.47522036626469	3.15112275848359	3.48132512698806	0.360895467508682	0.562961494539344	0.865755360453189
Merged-chr4-155505199-4	chr4	155504714	155505714	+	944.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	13853.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	3.86086649140282	3.81690298483604	3.9058197367419	4.07428918273149	4.07505646342939	4.16455674254832	0.734066039687947	0.135527160329832	0.492077669709152
Merged-chr2-6309695-3	chr2	6309190	6310190	+	650.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 4 of 6)	MLT1I|LTR|ERVL-MaLR	-13067.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	2.67096059925049	2.63066517860169	2.90784135303416	2.75666024202636	2.58378991080632	2.6822760341018	-0.340667252078822	0.651068991396171	0.902735752871093
Merged-chr9-124142041-4	chr9	124141522	124142522	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20479.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	6.69331795830692	6.61276336790522	6.49755037147955	6.83120295423793	6.87408689653289	7.0302014912575	0.469751839205283	0.0658384660585054	0.33487660293497
Merged-chr14-26534979-4	chr14	26534470	26535470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347494)	promoter-TSS (NM_001347494)	-346.0	NM_001310445	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	7.54252393256321	7.85923247523472	7.36113431500705	7.54912704444068	7.51202195355701	7.45120741228557	-0.15601341047677	0.529413410004051	0.850904712036958
Merged-chr15-50870317-4	chr15	50869824	50870824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18725.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.87000874150844	6.84613803113387	6.60942645115952	6.30879344536003	6.75329138655276	6.45266951127198	-0.406396894559005	0.151868085578785	0.519634796559235
Merged-chr8-120750772-4	chr8	120750256	120751256	+	983.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	12117.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.27983511932132	5.07512534698609	5.30702494308219	4.97353481262457	5.30324203052313	5.04084915243141	-0.195707471950286	0.599393514383552	0.880985224772602
Merged-chr3-65973510-4	chr3	65973014	65974014	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15265.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.12784148439856	3.80390853647354	4.10889904294406	4.1453341341327	4.10112056583587	3.71084881074426	-0.0334906054955557	0.950135115182299	0.988400419899929
Merged-chr7-51987076-4	chr7	51986594	51987594	+	899.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	18620.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	2.27682084917223	2.27330991917097	2.59341327088574	2.14246830393149	2.06844142675466	2.23068822691698	-1.74398010444798	0.0595510037017446	1
Merged-chr4-145236336-2	chr4	145235836	145236836	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	10534.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	4.8531656053686	4.84388781505168	5.36209032335861	5.25501970356412	4.82925675811912	5.47808706973326	0.359880092512919	0.39926077343218	0.775736478675217
Merged-chr8-108599821-3	chr8	108599291	108600291	+	696.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15114.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.6752862133272	3.58283755538524	3.50873488948798	3.56133077311135	3.43610288802556	3.78532051982306	-0.00287586881784863	0.995995047823358	0.998961028701257
Merged-chr2-143956967-2	chr2	143956467	143957467	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 11 of 23)	intron (NM_024281, intron 11 of 23)	41636.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.08429494767095	2.89886061465174	3.47925687598418	3.19556265748582	3.0877984069305	3.49909362901448	0.393137422424266	0.575161538029862	0.87094931637326
Merged-chr16-10545339-4	chr16	10544852	10545852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204229)	promoter-TSS (NM_001204229)	13.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	5.75631709546239	5.59125701349565	5.90628188602455	6.01008381166145	5.89909012402575	5.51110030501728	0.151994963146801	0.648166789725523	0.901703040183932
Merged-chr14-74919332-4	chr14	74918838	74919838	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	28539.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	6.1489640632719	6.10456771370661	5.97458333504809	6.30414140928154	6.47951886614618	6.0601659979513	0.37250148867654	0.207502199051119	0.59831527723439
Merged-chr9-99386825-3	chr9	99386330	99387330	+	925.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008624, exon 6 of 6)	3' UTR (NM_008624, exon 6 of 6)	-28300.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	4.39279183085525	4.28515994700952	4.31480257367579	4.03760640538247	4.12688938454177	4.24926366995201	-0.538766766788567	0.243324310482501	0.640502592040103
Merged-chr2-158134533-2	chr2	158134033	158135033	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	11859.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	6.42380165710428	6.65448516353488	6.76695091847392	6.24086524601317	6.5473268384144	6.79644516819067	-0.12096283008944	0.681942352203287	0.914908045004202
Merged-chr5-122989822-2	chr5	122989312	122990312	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003953)	promoter-TSS (NM_001003953)	458.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	6.27227446595913	6.35143420222915	5.68387522552816	5.85192967520029	5.92589324253918	5.62858971110084	-0.575985876225805	0.0922732772691698	0.404702775708351
Merged-chr2-69128986-4	chr2	69128481	69129481	+	956.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-6819.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	4.50787660910781	4.58509627270563	4.07211222719231	4.46664505000065	4.25339291429372	4.86122764406907	0.317800426319995	0.526797839381553	0.849687525994762
Merged-chr11-70289512-3	chr11	70289009	70290009	+	897.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33021.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	3.16559000978144	2.8138345639402	3.17751637699001	3.25178517578749	2.8842124127761	2.8867456751065	-0.183139453177089	0.800834078562924	0.952702190453274
Merged-chr4-3778245-2	chr4	3777731	3778731	+	857.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	57424.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.71489926267662	3.28607276208237	3.65816612218428	3.42140296906784	3.35321941887586	3.62641584529539	-0.357090361703295	0.557619861939366	0.864290289364679
Merged-chr1-173740805-5	chr1	173740298	173741298	+	772.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	1011.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	7.80849918467491	7.99023420956333	7.12801232235435	7.99864870146111	8.15965233968174	7.60269308619903	0.347510145849813	0.259920646559439	0.657488646922558
Merged-chr12-79755274-3	chr12	79754769	79755769	+	999.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	169464.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.88848003383713	4.78215074790944	4.19750147333902	4.39155522289754	4.30301430411966	4.31934539916841	-0.819597626227196	0.0855906522701959	0.387392678094999
Merged-chr2-129547554-2	chr2	129547054	129548054	+	604.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10952.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.22402986891405	5.75474502478769	5.1689239498078	5.672121157985	5.90632766392807	5.23691018947222	-0.277228113041686	0.524123691742945	0.848572432574534
Merged-chr12-65074720-3	chr12	65074238	65075238	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	-800.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	7.70712098145295	8.28013909802572	7.90563617057168	8.10692426283111	8.67235862687042	7.88790210466227	0.400769714643932	0.178745265828051	0.560054633198232
Merged-chr11-116071607-4	chr11	116071116	116072116	+	940.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009573, intron 13 of 32)	intron (NM_001009573, intron 13 of 32)	6345.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	3.80245836291645	3.84443383061379	4.15979683911867	4.06866672899741	4.19379059925306	4.3537927603008	0.791741598084165	0.114894498042654	0.452572495414372
Merged-chr18-67699752-4	chr18	67699260	67700260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24861.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	6.75108656384557	6.59366940217748	6.70165796685758	6.88739211370014	7.03919075525417	6.77631001260544	0.359194451697044	0.159192019752369	0.531158781765317
Merged-chr9-107556402-5	chr9	107555825	107556825	+	970.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	1742.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	5.9135925043367	5.88521277280739	6.21503445562139	6.29773607206061	6.3888050312884	6.62503244320436	0.732438467067458	0.0132379493524683	0.122226286031978
Merged-chr11-109468373-4	chr11	109467871	109468871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	4858.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	4.49894648367794	4.30019455946653	4.41432349439459	4.19771003762035	4.45721990518024	4.05660116894899	-0.379824761076571	0.423632897161832	0.792082736807957
Merged-chr1-176810266-2	chr1	176809766	176810766	+	735.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3142.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	4.74483012571415	5.0046317480728	5.26577987365694	4.71648994218009	4.79489058963132	4.80027595755505	-0.534220290539185	0.188711629466051	0.574222837446979
Merged-chr2-11779415-2	chr2	11778915	11779915	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177268, intron 1 of 6)	intron (NM_177268, intron 1 of 6)	1662.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	2.85679075982161	2.77677104849477	3.1627303179897	2.89132431128699	2.50432441456409	2.70652316268132	-1.17489151332835	0.137304400007466	0.495095532840233
Merged-chr9-75441515-4	chr9	75441014	75442014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039522)	promoter-TSS (NM_001039522)	-10.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	7.22991698370356	7.03895473731304	7.1082531478411	7.15405744668459	6.96976598695027	6.84687671959749	-0.194481470826177	0.434508720286586	0.798440839184216
Merged-chr17-45584246-4	chr17	45583752	45584752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001199116)	TTS (NM_001199116)	8141.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	7.11324628678801	7.34105990651402	6.93784308747931	7.47063662384948	7.69945177991111	7.45373708513099	0.591950372897983	0.0188393398355719	0.155343709884524
Merged-chr9-90211618-2	chr9	90211143	90212143	+	759.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	URR1B|DNA|hAT-Charlie	48665.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.60695512956719	3.64591200900445	4.29898415219644	4.16522569807073	4.18258166077241	4.24095394392852	0.92277250191681	0.101057391447926	0.423988776066131
Merged-chr2-152742632-4	chr2	152742127	152743127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6376.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	5.02678765475621	4.79788473782304	5.16924777364544	4.89594284078639	5.17014784706823	4.76788994487536	-0.0643898219938415	0.872881395306168	0.970324308510602
Merged-chr2-45231776-4	chr2	45231269	45232269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114327.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.71646072098965	7.69559747655438	7.59659553997801	7.71871502101983	7.96553726933538	7.49163938111125	0.11108271226521	0.64520582954889	0.900459345953675
Merged-chr1-133024149-1	chr1	133023649	133024649	+	551.0	f1_c57bl6.idr	intron (NM_008575, intron 1 of 11)	L1_Mus3|LINE|L1	1267.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	4.07137120810837	3.92729778738366	4.12141124578881	4.28410804115216	4.19854399098425	3.88787657062444	0.29752225789344	0.550635426039793	0.860709619458349
Merged-chr12-34547265-4	chr12	34546760	34547760	+	862.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	L1M5|LINE|L1	-18371.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.18115732780888	3.28309745052783	3.16045300829782	3.4840461727526	3.46239810472549	3.72334791146766	1.33581656386779	0.0306927146331356	0.211824824941478
Merged-chr6-134135113-4	chr6	134134616	134135616	+	989.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	99416.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.27488658030493	3.35092336142096	3.24810723430866	3.36867972254781	3.36323490465193	3.37726553768641	0.295829866950673	0.622082819017205	0.890937721901588
Merged-chr2-122771196-4	chr2	122770686	122771686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027888)	promoter-TSS (NR_027888)	-527.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	5.33692537200041	5.28005227376508	5.60080342116151	5.35022607998074	5.6392212000786	5.52704441530518	0.217604137276063	0.527703961750096	0.850108008834301
Merged-chr4-147431720-2	chr4	147431220	147432220	+	886.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-121557.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	4.08483872418221	4.28409710431989	3.90935457727502	3.89757299472718	4.05169035707778	4.62411526474812	0.317970570242678	0.560435349851747	0.865236087802179
Merged-chr18-20738649-2	chr18	20738149	20739149	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	7755.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	2.78473507380708	3.11090153394369	3.1041964585299	2.85598575752899	2.84505295493546	2.94398873158372	-0.607116194546541	0.391546132294911	0.770571678713221
Merged-chr2-60809007-3	chr2	60808516	60809516	+	840.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	72422.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.51662776079834	5.79907460082959	5.98434938398784	5.19675253026068	4.83146182920308	5.17990317731435	-1.38018007153303	0.0001873680613485	0.0047416428371916
Merged-chr1-105790507-7	chr1	105789986	105790986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	9763.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.66533938252224	6.24926426077685	6.64919636434037	6.87354778860565	6.62329097199821	6.88701624041723	0.417916957202215	0.140427536729616	0.500760820920022
Merged-chr5-121501675-4	chr5	121501164	121502164	+	731.424988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	1316.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	4.5912257930617	4.95219672124404	4.71074423483584	4.42548188302677	4.14195713725839	4.40453058265697	-1.10203440988902	0.0135160926345579	0.123778014080595
Merged-chr17-34165296-4	chr17	34164841	34165841	+	822.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	12150.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	4.06498960167487	4.03961192229043	4.20457759111958	4.53642510646582	4.32839034584312	4.44810976694124	0.918004475059673	0.0453236171363	0.268753799778025
Merged-chr11-78094670-4	chr11	78094161	78095161	+	997.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346762)	promoter-TSS (NM_001346762)	-6.0	NM_001346762	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	5.75105938866998	5.74382871376689	5.66303620887058	5.86033820442085	5.65780691271344	6.08117848399931	0.255959887257262	0.423096496808358	0.791826793817611
Merged-chr4-149518124-4	chr4	149517622	149518622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023465)	promoter-TSS (NM_023465)	-119.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	4.76542943281408	4.2169970496271	4.80412643995808	4.75362552869725	4.3634537288795	4.86878891172489	0.12826420916055	0.788328294236279	0.948908830222811
Merged-chr9-104285099-4	chr9	104284589	104285589	+	849.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22159.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	3.02228772316881	3.07158532281945	2.75063699673018	3.0397273806957	2.83218026026209	3.01631357292026	0.00923395586153027	0.989746265246269	0.997611022725407
Merged-chr15-97880718-4	chr15	97880192	97881192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	27604.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	4.59617489799045	4.63197645768029	4.79687238451881	4.28648245737953	4.39124378028394	4.39183841676347	-0.792324808131531	0.0652911190033764	0.333092791540953
Merged-chr19-5039887-1	chr19	5039387	5040387	+	997.0	f1_balb.idr	exon (NM_175383, exon 1 of 2)	exon (NM_175383, exon 1 of 2)	1061.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	2.95986757429601	2.81752608849158	2.63255336600156	3.08676460760632	2.70528360096063	3.25628374304858	1.04153478461468	0.188683326734855	0.574222837446979
Merged-chr2-27734623-3	chr2	27734076	27735076	+	856.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	23993.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.51500304289644	5.55337493836342	5.86204501493678	5.5553760772201	5.42906984231605	5.92259024025263	-0.00659520676795762	0.984915062786647	0.996832016727915
Merged-chr7-100227421-4	chr7	100226977	100227977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027629)	promoter-TSS (NM_027629)	-130.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	7.38354639722352	7.15757579786658	7.24637695177546	7.06218308843352	6.99555499206925	7.0576304929071	-0.345770095951274	0.146255124291009	0.510127279594495
Merged-chr14-75175153-5	chr14	75174516	75175516	+	844.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	38591.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.62469938517808	5.60041365605581	5.38301503987132	5.54116879926906	5.41354591421245	5.62148331377745	-0.0540605326745229	0.870094581782874	0.969998326624549
Merged-chr12-87374344-4	chr12	87373845	87374845	+	821.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	14010.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	3.55958425239547	3.69175094955992	3.76250391257142	3.64182116703391	3.6263201143773	3.6260871110213	-0.133052547001525	0.807661120762391	0.954557080558103
Merged-chr7-132714351-3	chr7	132713852	132714852	+	936.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	62564.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	5.71249234998379	6.21859769420046	5.87872841715993	5.40896790606342	5.35717974306727	5.17808187715764	-1.17601140953315	0.000755093425901721	0.0145103496033326
Merged-chr2-157064205-4	chr2	157063710	157064710	+	909.658325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15055.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	6.04920439170327	6.05934849503725	6.2910586533342	5.90072025025112	5.50921606765398	5.49674572449253	-0.850103267776856	0.00886857086728435	0.0926178862976062
Merged-chr5-43877592-4	chr5	43877070	43878070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8761.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.40742638988581	7.11063181839951	7.18946083303498	7.36883765678968	7.43643306164004	6.9953210754153	0.0697240667561517	0.788881213054179	0.949092571737679
Merged-chr16-91867881-2	chr16	91867381	91868381	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	63749.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.5222966861407	4.39336879544905	4.6735008865463	4.7209506181944	4.72834840912947	4.92038657251412	0.621373478178684	0.1336422693785	0.488881823197318
Merged-chr9-22306392-2	chr9	22305892	22306892	+	751.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_145612, intron 1 of 7)	intron (NM_145612, intron 1 of 7)	1246.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	3.34934249433275	3.69364813239642	3.63944494574219	3.6196999069882	3.5637809554618	3.85700192724818	0.382500524125796	0.509622483325658	0.840445299624642
Merged-chr8-75155741-2	chr8	75155241	75156241	+	635.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46232.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.65467373608363	4.45406581686647	4.50628191625496	4.73879208141141	4.1773151864903	4.61439324082091	-0.0420594741784009	0.92750683454263	0.983584626679457
Merged-chr1-127248762-4	chr1	127248284	127249284	+	946.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	43798.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.40706118141677	4.43746190495015	4.39272499561871	4.17458265058955	3.89063739430572	4.41774932226254	-0.672552466684172	0.164047729784227	0.538101489858471
Merged-chr17-35242775-4	chr17	35242295	35243295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	-22.0	NM_001252457	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	8.33645798807544	8.31856161063409	7.95180588914176	8.07265394492855	8.16945263334479	7.69475843638931	-0.305872388857338	0.222319103833634	0.617243444438087
Merged-chr1-151343718-4	chr1	151343236	151344236	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-750.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	7.93924156663599	8.11972185884976	7.82639812719224	8.08635373592256	8.42589046849682	7.74046806172743	0.217340040797011	0.409882794389287	0.783037226945994
Merged-chr11-120630112-4	chr11	120629568	120630568	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	3479.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	8.08657924976813	8.11023816702324	7.95058388446454	8.03110673477111	8.48971199862979	7.99892480530167	0.209470573223336	0.390378464144941	0.76958978415218
Merged-chr8-71272604-4	chr8	71272086	71273086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	4.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	7.22370947736572	7.02673258103962	7.36848754925203	7.30768868439151	7.18319906514175	7.23755406304208	0.0531771064818012	0.826897780414673	0.959278302444461
Merged-chr13-51107046-4	chr13	51106549	51107549	+	989.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283029, intron 1 of 5)	MTE2b|LTR|ERVL-MaLR	5502.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	3.3978581962918	3.66101990626336	3.59957350528478	3.70466636637647	3.69498839201927	3.77333495266057	0.569520914156642	0.30701863632765	0.703099001056797
Merged-chr3-69004546-4	chr3	69004045	69005045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133786)	promoter-TSS (NM_133786)	25.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	6.44996397456678	6.53287907271084	5.92558820903981	6.56042634678561	6.66394343367681	6.33720233597702	0.307880459458667	0.323391984750019	0.71668986599242
Merged-chr10-99190958-4	chr10	99190436	99191436	+	993.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B3|SINE|B2	-72295.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.4792641866754	3.22666853801048	3.12673392721337	3.64735778185458	3.48810549918185	3.55643278177907	1.02486303598621	0.102205561315054	0.426280562694693
Merged-chr8-3493152-4	chr8	3492661	3493661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080461)	promoter-TSS (NM_080461)	23.0	NM_080461	140482.0	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	5.06576744199578	5.30217000846852	5.32467032513989	5.33058627191866	4.75993438362498	5.06484845988901	-0.341575793920184	0.387752194525278	0.767721672469137
Merged-chr4-149436893-1	chr4	149436393	149437393	+	592.0	f1_balb.idr	Intergenic	MMVL30-int|LTR|ERV1	-10262.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	3.47965046891937	3.41590459224344	3.53884090538744	3.27158071879593	3.31760418011538	3.50401513455443	-0.43610670626341	0.461792044302507	0.815107818354545
Merged-chr3-149083652-3	chr3	149083148	149084148	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-129013.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.94897931996353	5.35031107112384	5.38399989542292	4.11981948035569	4.0162615313817	4.15018023654564	-2.89072593004949	8.36538028122039e-10	9.31816013975617e-08
Merged-chr5-142448252-4	chr5	142447759	142448759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-15672.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	3.3711054170247	3.1308288541392	3.36434539127947	2.90956479573594	2.98750876126569	3.03855159178435	-1.4031195993363	0.0379603347532627	0.241041173240955
Merged-chr11-69042323-2	chr11	69041873	69042873	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3264.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	3.931159718876	4.02731044870956	4.20437998838033	4.07852521268035	4.34774499380154	4.2273137689202	0.496073298410868	0.304740293357814	0.701067097814987
Merged-chr11-114209076-4	chr11	114208582	114209582	+	955.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10824.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	2.26637761685994	2.3141011744975	2.22935266336267	2.69698761644323	2.52523226791946	2.57740880967297	2.18708101733215	0.0135066670466723	1
Merged-chr11-8590623-2	chr11	8590123	8591123	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	73912.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.38890254695902	5.60047928808157	5.77359398787034	5.53033600112189	5.31921234227953	5.43480583441675	-0.307887214023248	0.366321525022589	0.75135282621967
Merged-chr5-72264420-2	chr5	72263920	72264920	+	655.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_153389, exon 12 of 23)	exon (NM_153389, exon 12 of 23)	61077.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.68328230684557	4.51784633905757	4.24999872729863	4.8275266989714	4.90245499339771	4.6458840778275	0.696734005764535	0.110453025107826	0.444096415229377
Merged-chr8-72548398-4	chr8	72547899	72548899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-89.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	6.92163323262453	7.37270268845592	6.99934096432125	7.0970496148075	7.16178067274972	7.12319473878263	0.0123726425639042	0.962112000400288	0.990748057984322
Merged-chr1-127976704-4	chr1	127976199	127977199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	107926.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	6.46544537865149	6.49288433333268	6.09640353881143	6.37725809103008	6.87530630133455	6.41418019099497	0.345254879800304	0.265367848638826	0.663104836467744
Merged-chr11-5762275-6	chr11	5761784	5762784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	92.0	NM_001361588	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	8.04667076878743	8.38650199301826	7.96054047392836	8.13869151296606	8.26549653555798	7.91292793567915	-0.0433889242736956	0.858086891517486	0.966810565896068
Merged-chr14-105896228-4	chr14	105895619	105896619	+	843.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011897, intron 1 of 1)	CpG	700.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	3.22325897742415	2.96046838905225	3.1849402697332	2.88751148961196	2.76850603409077	2.84681081355212	-1.47062413782779	0.0394605405290472	0.246707690761211
Merged-chr10-59616702-4	chr10	59616208	59617208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033259)	promoter-TSS (NM_001033259)	-16.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	5.19957877914202	4.81575151345418	4.90303274223536	5.33354174594597	4.71014090695831	4.89287836012409	0.041695661265086	0.922091363009455	0.982542868764899
Merged-chr11-115001668-4	chr11	115001130	115002130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134158, exon 1 of 4)	5' UTR (NM_134158, exon 1 of 4)	250.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	8.01726505589481	7.77518222843813	7.68466258960295	8.06574314163627	8.2147749070278	8.04393174839269	0.39042717850977	0.0846682928242575	0.385394912984962
Merged-chr3-121953777-3	chr3	121953277	121954277	+	836.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172525, intron 1 of 22)	CpG	548.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	3.75278555321512	3.92737707179286	3.87672272232208	4.27178652267297	3.92987178963205	3.89551075752324	0.578094682738359	0.265855417837848	0.663674403642054
Merged-chr18-12737772-2	chr18	12737272	12738272	+	750.916626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028341)	TTS (NM_028341)	-3583.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	5.00780933498488	5.17009408937302	5.62407444711347	5.89461940041784	5.81375345757495	6.11541578911122	1.24129396284872	0.000557565248652006	0.0114439785914741
Merged-chr6-125256746-4	chr6	125256236	125257236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8789.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	6.56278809112238	6.75863525042453	6.64291365114291	6.27887129694231	6.70821408399186	6.42047449409222	-0.265123159761574	0.34773238261924	0.735721282615637
Merged-chr9-61373691-3	chr9	61373239	61374239	+	989.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 1 of 19)	CpG	1373.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.55622155873321	4.1822253061061	4.47917986991033	4.37600760455994	4.3636683830354	4.18732670452475	-0.249968092594491	0.589460336423966	0.876882582082885
Merged-chr3-100442207-1	chr3	100441707	100442707	+	1000.0	f1_c57bl6.idr	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	15802.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.19629907860226	4.26313525281996	4.03862698426857	4.63791166237966	4.53789787646059	4.26241601313285	0.836245256590984	0.0732072120736465	0.355560261955779
Merged-chr17-24672378-4	chr17	24671873	24672873	+	924.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	2686.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	3.15897196524556	3.21821970432441	3.52915184329653	3.20278565340925	2.96100173374941	3.22983182720871	-0.731067039244212	0.26976284084202	0.66686579973798
Merged-chr19-41316615-2	chr19	41316115	41317115	+	752.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-52611.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	3.28370179530581	3.10719438149442	3.34212752112039	3.49941578022122	3.02016279763295	3.57139337094604	0.532894128636944	0.424825651907557	0.792848465017231
Merged-chr2-117105497-4	chr2	117104992	117105992	+	883.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15579.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.64587520058915	6.75764925718544	6.76501170192894	6.71002632251369	6.54245668374161	6.65044371484448	-0.141320073880868	0.579896281531035	0.872644657556124
Merged-chr11-98917673-4	chr11	98917189	98918189	+	947.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	9538.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	6.84587351786981	6.90077498635327	7.01588414351256	7.01087756144274	7.25715338334694	6.83188235687411	0.210548722178946	0.417659217061673	0.788219281770644
Merged-chr7-99434465-1	chr7	99433965	99434965	+	641.0	f1_balb.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-31539.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	4.53204293658277	4.26478328743843	4.33308886221027	4.1926504844158	4.12504648360232	4.12162335904552	-0.643536525799279	0.164825368841164	0.539526193324456
Merged-chr4-129883082-4	chr4	129882507	129883507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-23219.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	6.02889117714943	5.92139280481587	6.03824022519305	6.28917479798031	5.98120286737438	6.41538716614949	0.401028903449179	0.184373516331302	0.568008869150839
Merged-chr2-173349095-2	chr2	173348595	173349595	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-72562.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	1.93020612530891	1.89682951517872	2.05611101270629	1.73635056216041	1.73385594700814	1.79468778311501	-1.97690548366198	0.0621878888403843	1
Merged-chr7-99053615-2	chr7	99053115	99054115	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	87529.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	6.21533687078835	6.20399735440492	5.98464526079845	5.93920156379989	5.90163429965871	6.02255628963991	-0.338207258104749	0.245547257791334	0.642645689440908
Merged-chr1-152832532-4	chr1	152832019	152833019	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 11 of 15)	RSINE1|SINE|B4	32366.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	4.92537279854631	4.35051069556075	4.77208461071712	4.60808002650415	4.87978060514668	4.64090206167359	0.0410311027788705	0.926879573794693	0.983578869536024
Merged-chr17-28011172-2	chr17	28010672	28011672	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	69412.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	2.84179120756731	3.01805256646061	3.27404555360412	3.00732281212626	2.90163793102555	3.06979634085649	-0.268544415698121	0.699289188867856	0.920558737649758
Merged-chr15-99825504-2	chr15	99825004	99826004	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-5355.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	4.41523562596345	3.87824490291666	4.22662434591703	3.83508812481119	4.04599667207363	3.85880139512856	-0.78278238257498	0.141077382378259	0.501841092894255
Merged-chr2-28433060-2	chr2	28432560	28433560	+	811.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14881.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	2.99276449107159	2.98176329796967	3.61175364266019	3.13466284936764	2.86069565288141	3.53918056904606	-0.0783520683453082	0.917542797649905	0.98166801957001
Merged-chr9-4319067-2	chr9	4318567	4319567	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164574, intron 2 of 2)	intron (NM_001164574, intron 2 of 2)	9251.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	4.88527202785832	4.90171147820317	4.694073692517	4.95463348805788	4.86374996671744	4.63380477284521	-0.0126004978610725	0.974873918245531	0.994382735882691
Merged-chr17-35779168-3	chr17	35778677	35779677	+	847.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	6727.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.82617323796485	3.28547545320848	3.39580362068477	3.78347993382814	3.43890963027577	3.89255428863847	0.629921546754445	0.321555547153149	0.714923018504187
Merged-chr5-28311069-1	chr5	28310569	28311569	+	671.5	f0_c57.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-6120.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	3.29415818056598	3.09973420453979	3.39481676039146	3.94608103073852	3.96540731824702	3.94622223230151	2.6307831253926	2.20189430013084e-05	0.000791768456894067
Merged-chr1-118389981-4	chr1	118389482	118390482	+	891.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 1 of 39)	intron (NM_001359330, intron 1 of 39)	924.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	5.31108694419291	5.65324417977846	5.54658140983119	5.48036522443202	5.62815031031457	5.74084870149612	0.198278456975957	0.555653149826677	0.863297992583056
Merged-chr6-84031467-4	chr6	84030964	84031964	+	846.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	MTD|LTR|ERVL-MaLR	12078.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.29068592241697	4.71212042352285	4.32196196278251	4.2734071655235	4.22829199178376	4.85566822197204	0.0334717438937974	0.946628740606247	0.988007649185823
Merged-chr1-151963585-4	chr1	151963103	151964103	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	126717.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	4.04428327804222	3.96142451966196	3.94807571478259	3.80822390243882	3.44127878775285	3.81849470594284	-0.953956351813447	0.0821453920242523	0.379123019025808
Merged-chr4-138068314-3	chr4	138067726	138068726	+	999.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	70292.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	6.50370964233088	6.12321579300993	6.43902478141862	7.14191343876805	7.29121085895886	6.76045047044837	1.14337136275026	8.110984558936e-05	0.0023755677690248
Merged-chr9-15717568-3	chr9	15717117	15718117	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	7879.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	2.74517650867119	2.97156500356408	3.09473507805414	2.8965533920037	2.98499302358179	3.27407144131032	0.528327643045764	0.458651996075928	0.813172231997942
Merged-chr10-78096801-3	chr10	78096300	78097300	+	743.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27432.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	3.67495834642819	3.91328717044939	3.80650729857289	3.82755843289996	3.89736194498843	4.40411757674639	0.774673596004574	0.158783574340388	0.530592366400552
Merged-chr14-54410330-6	chr14	54409838	54410838	+	984.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	-866.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	7.54286350287034	7.47670788174148	7.564794855739	7.63698156907176	7.78578157459954	7.42741440206805	0.154951531971003	0.505531510591926	0.838177729332582
Merged-chr19-47127731-3	chr19	47127239	47128239	+	822.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011053, intron 30 of 35)	(TG)n|Simple_repeat|Simple_repeat	10555.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.33384616020188	3.99783510381641	4.48684738466317	4.49463213770922	4.33810698923117	4.55290167697888	0.469440766886649	0.318945258259418	0.712986863931269
Merged-chr16-55907249-4	chr16	55906732	55907732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028815, intron 10 of 10)	intron (NM_028815, intron 10 of 10)	-11953.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	3.58917696671866	3.74212631400961	3.38252853065594	3.47332718247109	3.65175038058515	3.62319778043904	-0.00525453758125246	0.992812305394101	0.998584818828585
Merged-chr4-126149195-2	chr4	126148695	126149695	+	799.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172145, intron 2 of 2)	CpG-10311	1192.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	4.36945849034205	4.37143887350005	4.30978351161521	4.24367771608159	4.3094789909314	4.14273448076586	-0.300362541441824	0.506852323394378	0.838597859957521
Merged-chr9-106299455-4	chr9	106298940	106299940	+	898.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 7 of 10)	PB1D10|SINE|Alu	18379.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.44053604212572	4.585066431094	4.79894744987159	4.85141242056492	4.9366971401345	5.19469565929613	0.885587345193519	0.0310324177262042	0.213206623248452
Merged-chr2-165325291-2	chr2	165324791	165325791	+	818.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1188.0	NM_080287	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	4.11602567327638	4.08437032069134	4.22297065626876	4.29479921259215	4.45593031458683	4.19829163876557	0.524342207135021	0.258090808621402	0.65554518843855
Merged-chr8-114439547-4	chr8	114439056	114440056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-96.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	5.76233752171532	5.77552299911613	5.45413554444821	5.53134062981972	5.79352343951458	5.69111612307907	-0.00468927978440473	0.988615116123591	0.997426973334006
Merged-chr2-73037444-3	chr2	73036941	73037941	+	798.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56995.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	4.87458989815534	4.92344443430911	4.94422587426056	4.81125116834224	4.96696339799888	4.6591149476538	-0.182759957731292	0.641309374439041	0.8989154097126
Merged-chr13-60618915-2	chr13	60618415	60619415	+	812.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	16704.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.40908794605392	5.29035725493334	5.63035989788556	4.73102812901783	4.38934823770914	5.06940484256578	-1.50137639895952	0.000349509774971021	0.00790271993363824
Merged-chr10-75676464-4	chr10	75675950	75676950	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172549, intron 29 of 36)	MIR3|SINE|MIR	-32442.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	7.04069211228346	7.33350719678692	7.31911121949642	6.8927207972959	7.20301251433843	6.88280242040799	-0.339360321410584	0.193312788628121	0.58042547704774
Merged-chr17-21488956-4	chr17	21488472	21489472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013843)	promoter-TSS (NM_013843)	-16.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	5.3710209121837	5.32553606434202	5.74627700953071	5.35039946072536	5.68252768778774	5.52104037971476	0.0931674063341548	0.791923104652189	0.949839887482488
Merged-chr11-21403064-4	chr11	21402561	21403561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31794.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	3.92241587640523	4.22705660540693	4.4091569217928	3.93611394163184	4.10292278200271	3.88553990269973	-0.60149567757026	0.244001052940157	0.641155801586704
Merged-chr15-97576416-2	chr15	97575916	97576916	+	716.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	129406.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	6.69315618728674	6.82150760826857	6.54178866437963	6.20536288595027	6.31413204746043	6.25939735620524	-0.709875542453836	0.00858470614625362	0.0905917855443844
Merged-chr6-53996785-3	chr6	53996292	53997292	+	966.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	18101.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	4.02054007813119	4.05162483040981	4.09791108929574	4.76356248670164	4.44211215753838	4.64932227628399	1.50325174886586	0.00111043512003431	0.0195177620337589
Merged-chr3-96223111-4	chr3	96222598	96223598	+	875.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178214, exon 1 of 1)	3' UTR (NM_178214, exon 1 of 1)	2026.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	4.87599733732254	4.55734627694983	4.79903673728025	5.16187430337093	5.14051609183953	5.04903735426026	0.815937118453141	0.0350389838374736	0.22970829966663
Merged-chr1-72583222-4	chr1	72582724	72583724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018817)	promoter-TSS (NM_018817)	-27.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	5.41040612378992	5.24332595950053	5.68711159555491	5.79781809220397	5.50727593467321	5.50487191482669	0.310777810071887	0.37338442514576	0.757289797872773
Merged-chr6-117909263-2	chr6	117908763	117909763	+	582.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166428, intron 1 of 3)	B1_Mm|SINE|Alu	1459.0	NM_001166429	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.07024525130524	4.17080395594601	4.31446017306634	4.35523832948124	4.29109249616614	4.20185698326061	0.287047172636468	0.534446367238487	0.853068627162717
Merged-chr16-44794587-3	chr16	44794089	44795089	+	863.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021325, exon 7 of 7)	3' UTR (NM_021325, exon 7 of 7)	-26139.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	3.8593290196587	3.91450376800101	3.89259939673921	3.60572755068311	3.67810149208597	4.00786878501906	-0.393858390183858	0.462836390685976	0.815459173697222
Merged-chr10-7271626-4	chr10	7271172	7272172	+	937.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-59435.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	3.62062422963556	3.54634909207685	3.45307846574282	3.09335056073312	3.07585920986336	3.47013953994728	-1.31940995579026	0.0406322946166143	0.251370406725594
Merged-chr19-36904483-2	chr19	36903983	36904983	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	15116.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	3.56323697688513	3.56928476299346	3.79348357523396	4.53576945579364	4.33178246925093	3.63229830449168	1.77888960013654	0.00274774555634871	0.0393789893649093
Merged-chr17-28698934-2	chr17	28698434	28699434	+	761.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	6366.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.04241099273669	5.90631459934206	5.83376512150564	6.10994633505906	6.0954537362976	5.89547671994704	0.188711307572533	0.525784058203719	0.849157429300966
Merged-chr5-117140522-3	chr5	117140010	117141010	+	764.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	6922.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	4.12096818785825	3.74188891131706	4.20660831340367	3.80927292653274	3.63623423154715	4.18895637372832	-0.433708955489499	0.439845465153895	0.801408375858453
Merged-chr1-161251576-2	chr1	161251070	161252070	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-360.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	4.71799869471537	4.74413949416719	4.61658937527172	5.22162281247877	4.90731819419271	4.80916392429494	0.662279204483718	0.100012546606919	0.421843317698826
Merged-chr10-12729194-3	chr10	12728703	12729703	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 13 of 73)	intron (NM_011682, intron 13 of 73)	132532.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	3.431658475665	3.46929953836281	3.32668823155965	3.36447780386213	3.53070245855109	3.45520551962221	0.151547573460269	0.796979274758168	0.951597367479313
Merged-chr16-17911394-4	chr16	17910889	17911889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022408)	promoter-TSS (NM_022408)	-41.0	NM_001081633	27886.0	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2	DiGeorge syndrome critical region gene 14	protein-coding	4.87398446065897	5.30817190681089	5.40031426247926	5.25203448057492	5.14579090505931	5.08569727938955	-0.0874451588591469	0.819429151466391	0.957283576025177
Merged-chr2-116972754-4	chr2	116972252	116973252	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72600.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	8.23653093003582	8.33806220083201	8.04342150931116	8.08420044373521	8.45251563619992	8.14911030243231	0.0396346451172796	0.864452299243583	0.968278303984855
Merged-chr2-37358886-4	chr2	37358403	37359403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026176, intron 1 of 3)	intron (NM_026176, intron 1 of 3)	429.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	6.36658373869053	6.48384126604875	6.70804008642392	6.60032727725985	6.56267353141885	6.70530499846028	0.162837585144201	0.545016700535467	0.858001414574823
Merged-chr14-70024896-4	chr14	70024396	70025396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-52549.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	3.09849906295513	2.84997734099758	3.08971054747673	3.30096867001604	2.98422158005766	3.48892314831622	1.08403912636155	0.119561700555474	0.462186289791579
Merged-chr14-70432535-3	chr14	70432033	70433033	+	761.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3439.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	3.10695671457257	3.2462838000468	3.52408032076398	3.37163180350755	3.15182649754028	3.59341071013807	0.313812612892421	0.629343323535737	0.894177193823197
Merged-chr1-85736618-4	chr1	85736115	85737115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177055)	promoter-TSS (NM_177055)	-9.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	7.27830072167629	7.83967756662343	7.84203129340727	7.66312149380027	7.93567713195994	7.5933532914727	0.0956514480374513	0.723811395686886	0.929128417950564
Merged-chr5-105526755-3	chr5	105526265	105527265	+	946.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	7294.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.55660971368915	4.01022906155241	4.2613236403678	3.51237887356375	3.46724252689433	3.63229600930291	-2.52181993317601	1.4881255716384e-05	0.00056437535353185
Merged-chr6-127446752-4	chr6	127446258	127447258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346513)	promoter-TSS (NM_001346513)	-82.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	6.42978784592867	6.42533227107832	6.31471248970773	6.7288553509026	6.88479475826976	6.22526491863955	0.421792346290643	0.160291020805392	0.532965919658045
Merged-chr3-75957011-4	chr3	75956523	75957523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175193)	promoter-TSS (NM_175193)	-74.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	5.97119797150695	5.89092039550574	6.19934420883921	5.78867835261182	5.55614800408319	6.12075885524044	-0.337768333770897	0.308598434310311	0.70458397876447
Merged-chr8-85034873-4	chr8	85034354	85035354	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	5.00945186190615	5.30252803460993	5.46249977808007	5.74694521998121	5.71869974743744	5.81327087395001	0.94602612724921	0.00570830381718409	0.0672104915834518
Merged-chr2-150782545-4	chr2	150782050	150783050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4246.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	6.39789863870045	6.23422368949877	6.21398963304236	6.16702005689927	6.5490346203779	6.31511855654247	0.121965996230633	0.673015217157615	0.911106504445705
Merged-chr10-81495693-3	chr10	81495223	81496223	+	783.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	640.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	5.14612371436949	4.96788655842269	5.12640708766298	5.06301696940297	5.04415112959839	5.01903116962829	-0.0771307348085501	0.832491609309364	0.960616839788396
Merged-chr10-60252753-4	chr10	60252244	60253244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24884.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.04065264569048	6.72756465599135	6.68464809280076	7.05373979649367	6.73600260423604	6.74363379205506	0.0320712967791899	0.906782218441625	0.978838075044546
Merged-chr15-59439557-4	chr15	59439068	59440068	+	987.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	65370.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	6.18192420805803	6.37664651921514	5.98202961654718	5.63408504092101	5.90589370005805	5.55831558698292	-0.831179043678192	0.010033358758323	0.100633524055273
Merged-chr1-40230509-4	chr1	40230035	40231035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	5455.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	2.98593598970346	2.64986505904581	2.84773344900075	2.71848764969706	2.73986993829992	2.66962111574124	-0.645401229613029	0.389577753956289	0.769244170164916
Merged-chr19-5803671-4	chr19	5803157	5804157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-985.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	8.8543898235856	9.12998752164797	8.67423126130217	8.62606760770782	8.95828884975466	8.85273772038064	-0.115200151927362	0.619175202439923	0.889687002184222
Merged-chr5-124582300-2	chr5	124581800	124582800	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181410, intron 1 of 12)	intron (NM_181410, intron 1 of 12)	3152.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	3.09937407456821	2.99113676193281	3.14182025534169	3.11896499850711	3.00784495758165	2.97638154056303	-0.179008668401287	0.786513622021726	0.948530822116986
Merged-chr11-86811565-2	chr11	86811065	86812065	+	855.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3905.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	5.35924980888742	5.26039560867317	5.5891382660092	5.35591572378272	5.43485957027781	5.30449412077416	-0.0553619792286549	0.872315034153251	0.970261003150518
Merged-chr3-108899460-2	chr3	108898960	108899960	+	882.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-9452.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	5.35083569333443	5.33908593896041	5.22999231226642	5.32681746706168	5.30891685460192	5.64115110410233	0.218362771375171	0.530221610502321	0.851070276054813
Merged-chr9-65790268-3	chr9	65789757	65790757	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	37307.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	4.64730535605371	4.27516280236219	4.5096782660301	4.21102256947109	4.19009104075568	4.22765416389182	-0.731841735654486	0.111363684774951	0.445840525536667
Merged-chr11-69396134-4	chr11	69395628	69396628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045525)	promoter-TSS (NM_001045525)	337.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	7.77995775922527	7.54847413341659	7.77210590727703	7.77840800460558	7.95299953521837	7.81183489591721	0.217269284272624	0.333478833194634	0.724434307441351
Merged-chr14-73410296-4	chr14	73409779	73410779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24990.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	5.92959648122647	5.80490332210018	6.14974300672658	5.93990183859974	5.89103665763004	5.92609275162819	-0.07160017150946	0.81304592795554	0.955886703779984
Merged-chr5-38259753-1	chr5	38259253	38260253	+	815.333313	f1_c57bl6.idr	promoter-TSS (NM_001356960)	promoter-TSS (NM_001356960)	-432.0	NM_001356960	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	5.957205292096	5.77917171489656	5.93000725468243	6.35704431435173	6.70022123139843	6.43355479192493	1.04919339551849	0.00032255849130618	0.00739175074211088
Merged-chr1-136675108-4	chr1	136674603	136675603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-8293.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	7.95452615012073	8.13472479881004	7.7189035395419	8.21774156627842	8.40084676771194	7.83803618128965	0.321828243407872	0.211532384556001	0.603945120913907
Merged-chr13-40953416-4	chr13	40952914	40953914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	MER20|DNA|hAT-Charlie	35780.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.11172762167598	4.0463843558078	3.78401108227456	3.84233594545967	3.96253719715751	3.56606696215438	-0.563378682154907	0.310568304912669	0.705943493284526
Merged-chr14-73237923-4	chr14	73237434	73238434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175116)	promoter-TSS (NM_175116)	43.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	7.19089737863851	7.38306671908651	7.1838118853689	7.13780247715928	7.59237326736059	7.33501346949444	0.172423697532093	0.499948158081866	0.834866436005229
Merged-chr2-150909723-4	chr2	150909219	150910219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001163476, exon 1 of 5)	exon (NM_001163476, exon 1 of 5)	125.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	6.96285234914307	7.02699513372929	7.01365304238499	7.28609593135814	7.49736290830705	6.68430841613799	0.32057813492084	0.276826787742354	0.67416522827482
Merged-chr16-11144931-2	chr16	11144431	11145431	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027502, intron 19 of 22)	intron (NR_027502, intron 19 of 22)	-10399.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	3.52928394844994	3.44221252223737	3.27390090082362	3.87604022948501	3.93655010556519	3.59344549481113	1.36186702597264	0.022267886312088	0.173373805159997
Merged-chr10-94545682-4	chr10	94545186	94546186	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	-5186.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.07535466935481	5.06522925504385	5.06287432998064	4.98839140440971	5.19761932772255	4.65600943475842	-0.178753430673247	0.653513118508758	0.903421138732039
Merged-chr18-60774528-4	chr18	60774047	60775047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020600)	promoter-TSS (NM_020600)	-49.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	7.72316442675385	8.09873118450774	7.61483783539576	7.94048783778878	7.94152115476068	7.6991033273495	0.0463757313164772	0.852364015167735	0.965378390789581
Merged-chr17-34604007-7	chr17	34603494	34604494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019403)	promoter-TSS (NM_019403)	-433.0	NM_019403	54197.0	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	6.93340466603255	6.48586240794507	6.7482985756535	7.20323377888203	7.25759288686599	6.60297973654042	0.504304392550637	0.0974854379468455	0.41630522958796
Merged-chr14-57387165-4	chr14	57386658	57387658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	11325.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	5.91439885500928	5.82564089434522	6.09850311140772	5.7113050855314	5.35753963402414	5.80155832263682	-0.579367506829673	0.0799005148534482	0.373776468202941
Merged-chr13-36116866-3	chr13	36116367	36117367	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	490.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	4.28379419351465	4.64829789647246	4.19069496737656	4.50852415778618	4.32095953827327	4.4011179318501	0.025095630583557	0.957120648217618	0.989887454023164
Merged-chr10-94461777-2	chr10	94461277	94462277	+	849.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 2 of 4)	B1_Mm|SINE|Alu	-53080.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.13299739622884	6.2057132591252	6.07585858145724	6.0859113848744	6.11628471762704	5.67660596582941	-0.262475569551902	0.393521597941867	0.771648798641347
Merged-chr8-70872893-2	chr8	70872395	70873395	+	725.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 1 of 4)	PB1D10|SINE|Alu	595.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	7.18520586920888	7.15018326443466	7.22787812667594	7.20714817896283	7.29461516159727	7.100637014837	0.0345698381245412	0.882529340466404	0.973184220613163
Merged-chr3-107760287-4	chr3	107759799	107760799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001113530, exon 1 of 9)	5' UTR (NM_001113530, exon 1 of 9)	170.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	5.2330147557141	5.14744632487012	4.84138196171762	5.31061397293281	4.85876398760701	5.02356421172804	-0.0391111745012114	0.921586677612838	0.982542868764899
Merged-chr18-56701000-4	chr18	56700492	56701492	+	946.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6821.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.83433744212698	3.65461045461239	4.04028840748015	4.2568329665285	4.03939233322831	4.36922077768135	1.12289775611949	0.0297488223714024	0.207732461554184
Merged-chr12-32207058-4	chr12	32206560	32207560	+	838.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146200, intron 1 of 10)	intron (NM_001146200, intron 1 of 10)	1278.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	4.57535056289306	4.46354855375375	4.95593424674324	4.27766468056959	4.35201811113305	4.43278797891689	-0.790626240012971	0.0803434774132627	0.375089494956111
Merged-chr2-11741188-2	chr2	11740688	11741688	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	35476.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	4.17561743457579	3.83883155614216	4.72509871870804	4.1282375423257	4.04002262310769	4.36847850609335	-0.308914280635177	0.579395590936314	0.87250443698034
Merged-chr18-53744699-4	chr18	53744208	53745208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-161.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	7.82667170375054	7.70475414704697	7.14646527212119	7.72429787910879	7.63970418659517	7.54179329242295	0.0522438452230731	0.846437149373428	0.964017504522256
Merged-chr19-34521602-4	chr19	34521103	34522103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5871.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	8.05557870649935	8.20219210166254	8.1459070470928	8.15122122949626	8.51227089420759	8.06861360042609	0.183656871511593	0.430444251004157	0.79626959019857
Merged-chr10-57793153-4	chr10	57792651	57793651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1393.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	7.3337657231454	7.42486404004603	7.30302345744474	7.16463841691953	7.54476372052314	7.10375176960042	-0.0872419302483525	0.731924509857792	0.931621712908389
Merged-chr3-53464304-3	chr3	53463829	53464829	+	880.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	512.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	6.87925493814221	7.05780763142436	6.87794867705056	7.03108047920533	6.94565483566845	6.59537688911557	-0.0981248475973793	0.711647284557792	0.92478339732604
Merged-chr18-37644256-4	chr18	37643776	37644776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175770)	promoter-TSS (NM_175770)	-72.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	8.40191584436193	9.04751404801218	8.04207411358878	8.39594360544199	8.77654571379719	8.06671881232712	-0.170562735968804	0.599295016796197	0.880934255570735
Merged-chr4-3692988-4	chr4	3692490	3693490	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	ORR1G|LTR|ERVL-MaLR	14869.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	5.56241884700298	5.67986307523983	5.67825759983945	6.33198172793752	6.29294753233316	6.10994137957597	1.07491142548084	0.000288510958943863	0.00674527110755857
Merged-chr9-20493580-4	chr9	20493106	20494106	+	818.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	-860.0	NM_001110309	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	6.0139152463701	6.39711207501306	6.49399330045491	6.65600704125393	6.85879384235699	6.46332740294236	0.59091344486491	0.0474695064118051	0.276000467438577
Merged-chr8-46470197-2	chr8	46469697	46470697	+	619.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-840.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	3.71617945861078	3.62518754897502	3.95381423795508	3.84932045062018	3.90365263704915	4.0217996237496	0.510965098125614	0.331927280260267	0.723275680508466
Merged-chr7-114193885-4	chr7	114193398	114194398	+	883.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60782.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	5.61260702975521	5.56376600596182	5.39990362817572	6.03456400771606	5.90336665356339	5.61781262859515	0.61229439206725	0.0615807730512567	0.32196122928363
Merged-chr8-25052127-4	chr8	25051616	25052616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-13154.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	6.4833374006801	6.43181564930112	6.81475238260178	6.23376570007586	6.34108877832449	6.58820168811092	-0.306489764219808	0.288635722544266	0.686115906795316
Merged-chr8-125567879-1	chr8	125567379	125568379	+	605.0	f1_balb.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1984.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.24283465438886	5.09329105109105	5.08004511633167	4.93175102917097	4.87059075266607	5.00507791127456	-0.454433058738704	0.217039020809095	0.610703221688078
Merged-chr2-30328843-1	chr2	30328343	30329343	+	589.0	f0_balb.idr	intron (NM_198304, intron 24 of 43)	ID_B1|SINE|B4	30473.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	3.78770395017279	3.46641750107762	3.56882769350937	3.55281589406288	3.50196138672739	3.29102120999953	-0.568352504174717	0.343202403308061	0.732122577951311
Merged-chr13-94285406-4	chr13	94284881	94285881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029153)	promoter-TSS (NM_029153)	-100.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	7.68652726506227	7.57641362177294	7.18850018556491	7.56802487950863	7.13852899156371	6.95638932524373	-0.376057923984658	0.190683028210519	0.577168185207017
Merged-chr11-29714972-2	chr11	29714472	29715472	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-3591.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.84457625338091	4.09449255790651	3.88747119230726	4.05673948247486	3.80432696904394	4.05508393978059	0.059862879635653	0.907352828000154	0.978893925942884
Merged-chr2-129310023-4	chr2	129309529	129310529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010554)	promoter-TSS (NM_010554)	-57.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	7.93524501595637	7.75108299493048	7.87353185424278	7.6790694264161	7.77047697845315	7.45194858548951	-0.297027117900959	0.196063808624466	0.583855035001952
Merged-chr4-149308824-2	chr4	149308324	149309324	+	681.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1091.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	5.27186581652356	5.07017204990921	4.92678795732397	4.66917982576843	4.87272771256563	5.28835154733342	-0.307817530151701	0.455381779651895	0.810916340573998
Merged-chr2-156295904-3	chr2	156295395	156296395	+	925.9111330000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-16578.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	5.96119552733009	6.10802400449761	5.95960718889355	6.40345349542485	6.42255771347485	6.02135895330534	0.491920363164768	0.0987256495017598	0.419120604272573
Merged-chr8-36252189-2	chr8	36251692	36252692	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2676.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.03133048705918	6.41812261826655	6.02759077549155	5.31189684547084	4.96548575365995	5.23289166620011	-1.88261798552004	5.15378605672951e-08	3.98917423449627e-06
Merged-chr17-63895369-4	chr17	63894888	63895888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286415, intron 1 of 17)	intron (NM_001286415, intron 1 of 17)	17322.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.80909302281662	5.49913095701322	5.48298827481386	5.97382170647371	5.63003641428663	5.96446989307845	0.446138334993595	0.184114029048755	0.567763528958023
Merged-chr1-105789680-2	chr1	105789180	105790180	+	772.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	B4A|SINE|B4	8957.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.1969040137304	6.33829852204487	6.32994133701983	6.50181587706923	6.59730353564425	6.40892177423146	0.365716280203001	0.175298898725818	0.555104320042256
Merged-chr11-103262593-4	chr11	103262094	103263094	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	4807.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	7.43018796509132	7.4429130115573	7.32760723370914	7.19063947430793	7.68535644469388	7.41767967393658	0.0746230350553287	0.767417210118419	0.942617496111852
Merged-chr16-38396315-4	chr16	38395805	38396805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_134102, exon 11 of 11)	3' UTR (NM_134102, exon 11 of 11)	34115.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	5.61480081915071	5.18289328476654	5.48013620541091	5.28133669784888	5.14612154876748	4.9456901734149	-0.597323999641959	0.11016646025384	0.443473920929912
Merged-chr2-36236603-4	chr2	36236107	36237107	+	918.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	6181.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.39925968639033	6.25058758465302	6.67533015258976	6.825404939218	6.72702460896421	6.28044574448519	0.314907985014453	0.297428399292235	0.694108042302854
Merged-chr19-6856921-4	chr19	6856428	6857428	+	940.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081291, exon 6 of 27)	exon (NM_001081291, exon 6 of 27)	1283.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	5.65563605685458	5.76841108965233	5.95190170420942	6.06542977923288	6.07287032081088	5.73858861622968	0.334232417751933	0.287874268246898	0.685245511851696
Merged-chr1-24677391-2	chr1	24676891	24677891	+	872.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1153.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	3.91261440770787	3.86182025031197	3.79938270049923	4.16795479785929	3.83321712131069	3.87041371587776	0.320559288345375	0.536867936711375	0.854215768737235
Merged-chr16-57215714-4	chr16	57215166	57216166	+	918.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14195.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	7.3064213101893	7.39893885681585	7.01843972430687	7.17063074578104	7.48330998823872	7.06270252889802	0.00351646033648343	0.989404944687365	0.997597007948949
Merged-chr17-34262633-2	chr17	34262134	34263134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	-593.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.29344702348027	6.1527020316013	5.95075358878147	7.26953388522993	7.6151564311686	6.77942357168838	1.76554214330128	3.14617454952511e-08	2.56151557648616e-06
Merged-chr5-150840815-4	chr5	150840309	150841309	+	957.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-111798.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	5.62228307977242	5.83459923121649	5.90283390218168	5.93068030212916	6.14601552676163	6.07687807417554	0.475779151453253	0.118264672529019	0.459496025018426
Merged-chr11-44373029-4	chr11	44372502	44373502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27061.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.70431205646231	4.5689299969448	4.39734301921024	5.14859899125316	5.43636990714622	5.58477727452079	1.78163029638858	1.44067885503925e-05	0.000548882812134183
Merged-chr19-29675651-4	chr19	29675138	29676138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22303.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	4.27601386382473	4.15202715585237	3.9004767474236	4.3893589854767	4.22574794761951	4.27295851672395	0.45978519638538	0.341753444399429	0.730980941894702
Merged-chr2-174069825-4	chr2	174069318	174070318	+	799.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7233.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	4.33707203348217	3.90353160610596	3.97717997699373	4.04408206655034	3.96140909253005	4.27870831448674	0.00561675846975323	0.991287792392031	0.998222399926149
Merged-chr5-117149509-1	chr5	117149009	117150009	+	633.0	f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	15921.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.86589811418814	3.62997708948994	3.64240608372774	3.82951644946126	3.98112265482044	3.6583108627793	0.37932949292731	0.489535457762318	0.829739482756292
Merged-chr8-111562035-4	chr8	111561526	111562526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	23683.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	6.60534118050558	6.59938655809045	5.78627127601794	5.86152069664668	5.67627590750693	5.79419567415933	-1.05693698268997	0.00254294363101665	0.0372064803322724
Merged-chr3-107696636-4	chr3	107696154	107697154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357112)	promoter-TSS (NM_001357112)	-94.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	7.36321257507793	6.74755119410002	6.51715865912382	7.13360475692843	6.50756915657037	6.57718102501117	-0.249986786586673	0.473458575115972	0.82090428702971
Merged-chr10-39417804-4	chr10	39417320	39418320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48021.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.50697857444715	7.37393088839718	7.21952814817845	7.46238596723486	7.61553715737264	7.25259587410029	0.121849845440314	0.620223362352155	0.890026802452616
Merged-chr17-28515280-2	chr17	28514780	28515780	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	IMPB_01|Satellite|Satellite	-15581.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	3.71038495757013	4.03892223699766	3.85205325148311	3.73357988937413	3.54336580111768	4.1499965168563	-0.160367009888889	0.77972560022531	0.945896107312523
Merged-chr1-135266084-4	chr1	135265592	135266592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 7 of 9)	intron (NM_001159624, intron 7 of 9)	-7620.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	5.65818210567087	5.10099150076899	5.36905679461065	5.78855795427924	5.56145496934346	5.55290415356971	0.454983427090037	0.208442417771615	0.599337828187015
Merged-chr9-20898618-4	chr9	20898125	20899125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016876)	promoter-TSS (NM_016876)	-35.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	6.34969653771746	6.33495851963435	6.59633235325876	6.79942069947559	6.45006194789611	6.62248876729424	0.328667997531699	0.238275531225722	0.634951642748382
Merged-chr2-167754888-3	chr2	167754412	167755412	+	996.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63735.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.19534336227959	6.83853135305457	6.88003147759887	6.80772742990274	6.7274074104564	6.30247658589701	-0.532176832474645	0.0653996310912892	0.333454509521337
Merged-chr4-102605163-1	chr4	102604663	102605663	+	551.0	f0_balb.idr	exon (NM_001177980, exon 10 of 10)	exon (NM_001177980, exon 10 of 10)	15320.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.32415969508968	4.4052815765743	4.74256897811986	3.9673586626351	4.01346803454739	4.43788390790033	-0.933019012967041	0.0599956936705108	0.317073284320274
Merged-chr7-80026644-2	chr7	80026144	80027144	+	866.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	416.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.135991675499	5.97059177399599	6.0723471450226	6.45229691339261	6.17642746049494	6.63266787534924	0.605379695824304	0.0417834052930463	0.255715915535731
Merged-chr2-36235092-4	chr2	36234591	36235591	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	4665.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	6.70905021930534	6.55166272082196	6.45582760368208	6.93656933547099	6.78829952422962	6.47761176542343	0.275283296010611	0.321336281389847	0.714837665357421
Merged-chr15-31223832-2	chr15	31223332	31224332	+	882.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-553.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	5.16203548725794	4.92017530844904	4.94050765338856	4.78132897057847	4.68095325941779	4.65416195722773	-0.690652598910638	0.0784477452412488	0.369913864933913
Merged-chr13-89889235-4	chr13	89888697	89889697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-146685.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.50195270169696	4.62124130227309	4.77098650484575	4.18498299098485	4.13463692127987	4.27479861879577	-1.13678505591537	0.0110632175831156	0.107944208332068
Merged-chr9-121352408-4	chr9	121351916	121352916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-14542.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.05517696335861	4.60009902620947	4.77135584069195	4.69798285469402	4.86499925267916	4.54616791451794	-0.242244420412326	0.571332247463475	0.869428183241799
Merged-chr4-10998925-3	chr4	10998421	10999421	+	669.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	8698.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.71097529914999	3.92386004629166	3.81630441459313	4.05638240067832	4.33635074662729	4.17760458438439	1.151266248071	0.0236306615898125	0.180275060930148
Merged-chr18-12956188-3	chr18	12955698	12956698	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14357.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	7.15101600516006	7.38007602750531	7.36335139268551	7.17300663532129	7.21775622443995	6.79424195669596	-0.32148527048866	0.214768337984108	0.607977993080214
Merged-chr13-52621573-2	chr13	52621073	52622073	+	895.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 4 of 13)	intron (NM_011518, intron 4 of 13)	24691.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.76729316013541	2.95161633719764	2.95652094618468	2.85626845687745	2.58726522714995	2.8502344932478	-0.652728035302194	0.377966309844431	0.760263512208655
Merged-chr10-117866336-4	chr10	117865829	117866829	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20355.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	7.06837376668273	7.18716190002945	6.3855560590793	7.20412236503325	7.54543787009045	6.8215511487386	0.445280251036138	0.186812772607499	0.571637546216283
Merged-chr2-129598151-2	chr2	129597651	129598651	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	2689.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	6.04898312818122	6.09169106761814	6.20059041265976	6.30794000919311	6.51206955459366	5.96590738103638	0.311195582435809	0.306880535103966	0.703091920100449
Merged-chr5-143511739-3	chr5	143511249	143512249	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	16244.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	5.52776375296591	5.58997351181696	5.38655989313756	5.22482372476795	5.40379221839082	5.38851577624461	-0.325930185927104	0.333192035332728	0.724131786290038
Merged-chr6-124736566-2	chr6	124736066	124737066	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077705, intron 1 of 15)	intron (NM_001077705, intron 1 of 15)	2143.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	5.37146662960121	5.40016156566176	5.32944449321865	6.49411615856902	6.78999718074836	6.58428447131068	2.19257840147677	5.5905322902128e-13	1.12361596812567e-10
Merged-chr2-3723979-4	chr2	3723511	3724511	+	788.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	10553.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.48122834323139	4.51848377744233	4.49354838124048	4.22919109481271	4.14022964762432	4.05454119730638	-0.939408014279967	0.0385139502057093	0.243127893840881
Merged-chr3-105799118-5	chr3	105798631	105799631	+	815.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	2250.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	5.69192499557022	5.77714111567594	6.16798744507988	6.50368780560027	6.36646384014623	6.45460679273578	0.949494558531363	0.00164957893632744	0.0266468965509482
Merged-chr15-89173468-2	chr15	89172968	89173968	+	902.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	CpG	483.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	6.57935879192409	6.91988796276771	7.00941589576421	6.76456791009336	6.95556351432242	6.90607889182551	0.0548731140116209	0.837758137267669	0.96222208690411
Merged-chr11-11777009-4	chr11	11776500	11777500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31962.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.56678649076785	4.85116889252767	5.43495650212941	4.91028839869132	4.89288188873369	5.06309793769589	-0.0803177314473376	0.857065117367908	0.966681760410265
Merged-chr19-11818854-3	chr19	11818369	11819369	+	975.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153434, exon 1 of 12)	non-coding (NR_153434, exon 1 of 12)	534.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	8.01367829867013	8.21614384104963	7.70595424886302	8.03861938995882	8.2147292502515	7.83395504959729	0.0586288474931996	0.815161145775631	0.956370078970016
Merged-chr10-21804531-3	chr10	21804039	21805039	+	810.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77645.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.4985461209577	4.64797063943505	4.13380263503969	4.74902515613682	4.87117871760364	4.36183288576013	0.559471336296439	0.243787755949722	0.640939416634473
Merged-chr3-90101246-1	chr3	90100746	90101746	+	642.0	f1_c57bl6.idr	TTS (NM_022314)	TTS (NM_022314)	-2886.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	2.95392078815803	3.01225804627361	3.11891046354728	3.28941334253345	3.13847341442293	3.51524258428005	1.24715956772457	0.0592762636853725	0.315364173762253
Merged-chr3-27743504-3	chr3	27743005	27744005	+	766.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33053.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	3.14619360333202	3.18689358454388	3.13164195303841	3.10907989292817	2.78269761160937	2.89859055963105	-1.02524208441004	0.141445228704473	0.502183459290427
Merged-chr9-66856753-4	chr9	66856287	66857287	+	740.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 3 of 7)	B1_Mur1|SINE|Alu	-22081.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	4.41738775906498	4.91364371154521	4.76467947025408	4.46992945492714	4.265230265465	4.23688819872847	-0.959761765724211	0.0364259460684473	0.23482839702978
Merged-chr3-27766249-4	chr3	27765746	27766746	+	962.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55794.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	4.89662736284486	5.02661860575835	4.65837169408126	4.55236460988823	4.59875007487159	4.46272757708076	-0.781901301442837	0.0605034548365251	0.318564324858752
Merged-chr11-114924358-2	chr11	114923858	114924858	+	845.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_199221, exon 4 of 4)	3' UTR (NM_199221, exon 4 of 4)	10028.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	3.17403399988068	3.47193500817232	3.74364819839811	3.17720021813843	3.29468241764686	3.71884909481201	-0.24355384685947	0.715362839589045	0.926392907650078
Merged-chr1-173877357-4	chr1	173876852	173877852	+	810.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	2835.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	5.17719085018791	5.12528490618965	4.79692871799087	4.61485022152133	4.79502714611956	4.65690540916072	-0.793542551925985	0.0489475010625968	0.281097637408831
Merged-chr3-28807580-2	chr3	28807080	28808080	+	557.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026517)	TTS (NM_026517)	2072.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	3.05913688831031	2.77392185936515	3.00864240686913	2.81599534425632	2.72450879190817	2.96421964576167	-0.583551352185859	0.41741464408473	0.787972178978226
Merged-chr1-119503333-2	chr1	119502833	119503833	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	1449.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	4.91679119174661	5.19164282970123	5.33387578834558	5.25587303621948	5.46999944537589	5.42613881002982	0.479922457274818	0.186290157588368	0.570803258887202
Merged-chr13-42049617-4	chr13	42049114	42050114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2407.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	7.80985316367182	7.72723040131712	7.60450183671844	8.07419716489744	8.15512975726682	8.01527201202562	0.519904114758641	0.0161133499872922	0.139517130670407
Merged-chr12-16920276-3	chr12	16919753	16920753	+	729.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25275.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	4.66944463554883	4.1890070560682	4.47214215371435	4.34710623996817	4.31293074720109	4.45509925122808	-0.23135028470703	0.616138565874401	0.888272754285876
Merged-chr8-70041720-2	chr8	70041216	70042216	+	893.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028993, intron 1 of 18)	intron (NM_028993, intron 1 of 18)	1018.0	NM_001167939	74549.0	Mm.269061	NM_028993	ENSMUSG00000031858	Mau2	9130404D08Rik|A930019L04Rik|C77863|C79014|Mau-2|mKIAA0892	MAU2 sister chromatid cohesion factor	protein-coding	5.86760458797273	5.80714724743202	5.9259153935491	6.27392696654111	6.23313882508241	6.01112290219881	0.554733443635128	0.057924654709612	0.31103481959634
Merged-chr2-118905930-3	chr2	118905428	118906428	+	804.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	4313.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	2.75628390141765	3.00749431009679	3.10209747186578	2.9963734682605	2.99273846180666	3.17340138947424	0.430172669485704	0.536192594523087	0.85392789486322
Merged-chr6-142757266-4	chr6	142756755	142757755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	569.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	7.90951192703963	7.97907820619796	7.28571648666921	7.52914762406846	7.55556400489334	7.31894990553382	-0.426669694339498	0.121895225999545	0.467016206140995
Merged-chr5-21039534-4	chr5	21039020	21040020	+	943.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	CYRA11_Mm|Unknown|Y-chromosome	-4273.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.96623325761543	5.19834399651149	5.23358785094931	5.36837531890896	5.19204118102413	5.55616783978321	0.476790970239535	0.190736485740896	0.577277371721487
Merged-chr7-99102703-4	chr7	99102222	99103222	+	927.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178635, intron 3 of 14)	RMER17C|LTR|ERVK	38422.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.64258390182136	7.34186536974888	6.96926200726165	7.79114765838389	7.73769437891889	7.29704342709828	0.403233280951965	0.16368185997315	0.537749158771312
Merged-chr11-75644447-2	chr11	75643947	75644947	+	773.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_008916, intron 7 of 11)	intron (NM_008916, intron 7 of 11)	-7062.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	3.54850601373157	3.43387366954351	3.50547632320913	3.28449064061771	3.26567647496684	3.23751733917512	-0.915189111550195	0.128541946647338	0.479607116121776
Merged-chr3-100161248-2	chr3	100160741	100161741	+	816.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355657, intron 1 of 26)	intron (NM_001355657, intron 1 of 26)	1166.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	5.40747829573951	5.5952046067041	5.87394134680504	5.86866130521843	5.63240111459316	5.88862220736132	0.305285463756504	0.361504678967123	0.747413912465046
Merged-chr10-127746050-4	chr10	127745538	127746538	+	944.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5760.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	4.93350693087055	4.88493125839465	4.84551676548728	5.50863157373258	5.36320644448732	5.36350566611897	1.07888746426773	0.00257392054080319	0.0375145875563411
Merged-chr2-27746829-2	chr2	27746329	27747329	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	36246.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.85397229899878	4.20755700977888	4.58178955145385	3.78047032473514	4.02490768866008	4.53889518118575	-0.255825072807007	0.658682676030806	0.905029279003473
Merged-chr2-152756226-2	chr2	152755726	152756726	+	763.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2053.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	5.19347743653118	4.63994813327686	4.67877834279764	4.72197893879025	5.03093951655369	4.52525584857481	-0.183021461272676	0.688080036056132	0.917193226920892
Merged-chr17-57409883-4	chr17	57409362	57410362	+	979.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 7 of 22)	intron (NM_001355722, intron 7 of 22)	51176.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.2706164330369	3.88973855435779	3.98822963883043	3.86096937810029	3.68310688474593	4.4805324965162	-0.0349853970597142	0.9517062781836	0.988927145527245
Merged-chr10-84412803-4	chr10	84412315	84413315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	27656.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	6.30739528172171	6.12815499741558	6.28465329486808	6.04632322642702	5.96836820785918	6.20592788761772	-0.290802270678049	0.311018622193907	0.706253241151397
Merged-chr8-8661992-4	chr8	8661491	8662491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1218.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.23538737677585	3.00995275268583	3.11182708237388	3.02947380859025	3.2816729874761	3.2978416339289	0.364546028885016	0.578465730809974	0.872437129840066
Merged-chr12-3737788-1	chr12	3737288	3738288	+	900.0	f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	B3A|SINE|B2	-69192.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.37486263253615	5.41958920063396	4.95277414377917	5.18605673421014	5.60803512193381	4.97937346050767	0.0553446765949145	0.892547272773351	0.975146620821922
Merged-chr12-84038344-4	chr12	84037847	84038847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134247)	promoter-TSS (NM_134247)	-32.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	6.124274521057	5.93112342040838	5.19410701042101	5.60774157207691	5.72591410143277	5.22360045682629	-0.498682268569653	0.224383067148434	0.619153519154732
Merged-chr17-23676765-4	chr17	23676250	23677250	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013749, intron 1 of 3)	CpG	699.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	5.33792878625948	5.2967535029409	5.14000966541712	5.36088758598791	5.05304606227575	5.0254247207312	-0.223314454501511	0.540825120549033	0.856546234535532
Merged-chr2-60817492-4	chr2	60816994	60817994	+	905.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63944.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.91307427813575	5.97397764485806	5.90494351158369	6.08136735601499	6.24331963981089	5.73002675252487	0.205895542135022	0.511292559355167	0.841331921585713
Merged-chr10-128459914-2	chr10	128459414	128460414	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114097, intron 1 of 27)	intron (NM_001114097, intron 1 of 27)	678.0	NM_001114097	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	4.71271527705838	4.50673382645622	4.82581367713845	5.00811344752518	4.43323874679497	4.85468104462206	0.229207080324535	0.604202427893018	0.883003945319161
Merged-chr17-35865111-4	chr17	35864693	35865693	+	771.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146711)	promoter-TSS (NM_001146711)	-402.0	NM_001146711	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	4.41667729010742	4.30975028379199	4.93392545758058	4.6768977972236	4.64130668636731	5.06061022171952	0.536581472577733	0.247383458917101	0.644265503899033
Merged-chr2-150844926-4	chr2	150844389	150845389	+	960.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-2319.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.96942599979858	6.35992424832636	6.23110090385358	6.00565361474144	6.24259787093581	6.18906615833529	-0.0769085491878466	0.79767746996025	0.951799370596145
Merged-chr18-46516040-7	chr18	46515545	46516545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173423, intron 2 of 2)	L1MB8|LINE|L1	9926.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	7.19348176982747	7.06212018724516	6.65127484859478	7.34523323024062	7.54051547323679	6.81410418155905	0.422273943528419	0.170304242246882	0.547658952227191
Merged-chr4-155221964-8	chr4	155221536	155222536	+	822.473206	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011385, exon 1 of 7)	exon (NM_011385, exon 1 of 7)	499.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.86245205290511	5.71860338497482	5.98284862738876	5.7655242055855	5.61562938634067	5.59310564084685	-0.345692681261089	0.271079491452051	0.668361183862025
Merged-chr2-118534119-4	chr2	118533600	118534600	+	886.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	10487.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	3.39689693091979	3.50360910929421	3.58385709515557	3.91945266941552	3.44926648656566	3.42975564895786	0.450772001200003	0.454403111159367	0.810258970761208
Merged-chr18-75372008-2	chr18	75371508	75372508	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042660, intron 2 of 3)	intron (NM_001042660, intron 2 of 3)	4643.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	4.25706821141837	4.13124174126855	4.59185031367667	4.68252385875132	4.74441331171308	4.40643824551642	0.750427831440998	0.102097936205868	0.426069687497354
Merged-chr13-43560811-2	chr13	43560311	43561311	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-620.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	7.73764649125607	7.58110107425516	7.56254053778863	7.74890464156094	8.06575828266417	7.56951368514134	0.273039062943573	0.2682531667274	0.66531966666826
Merged-chr1-95451955-2	chr1	95451446	95452446	+	688.233337	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	138318.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	2.90286440645514	2.99463006673681	3.08549035285495	2.63388428681837	2.90331963913298	2.98611333302445	-0.702128508910969	0.337675837809074	0.7275708402926
Merged-chr2-167960455-4	chr2	167959955	167960955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28128.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.0947990148789	7.25671534880852	6.78034440405183	6.76127317834479	6.90528153077309	6.44661897007007	-0.518507299846465	0.0694410256991772	0.344832910929395
Merged-chr2-127376285-1	chr2	127375785	127376785	+	698.0	f0_c57.idr	Intergenic	Intergenic	12999.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	3.91949888347248	3.50555347319703	4.00739690375327	4.35346041062498	4.28130090097331	4.72745166242446	1.83074669843098	0.000793601550456452	0.015078317864377
Merged-chr1-156560646-4	chr1	156560118	156561118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1831.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	7.13345542831423	7.08593137839242	6.76992733044142	7.64370934028699	8.07143666222237	7.50557825467678	1.11458851764313	5.10210826774729e-05	0.00160922580113595
Merged-chr10-8876860-1	chr10	8876360	8877360	+	628.333313	f1_balb.idr	intron (NM_175155, intron 1 of 19)	B3|SINE|B2	9210.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.47871561931792	5.56484636727953	5.75580683412987	5.70073038100693	5.60924959514434	5.58061137011057	0.0679216526896304	0.832941800786128	0.960881495096454
Merged-chr5-28065679-4	chr5	28065144	28066144	+	795.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-5768.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	3.04748103474775	2.85440278081812	2.99679378832229	2.9792116382367	2.62639592303789	2.76044353159251	-0.859954003065787	0.246652555854994	0.643775908190167
Merged-chr11-86816393-2	chr11	86815893	86816893	+	904.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-8733.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	5.77994989168585	5.79988481827254	5.86287577399894	5.73394944079788	6.03028458149052	5.79970214072685	0.104387921406208	0.735388415856877	0.932740485166675
Merged-chr3-101594458-4	chr3	101593941	101594941	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144900, intron 2 of 22)	intron (NM_144900, intron 2 of 22)	10266.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	4.10727454879416	4.03288682534247	4.58689121596299	4.48036154249858	4.35574506224085	4.49751140307954	0.501084052578496	0.297976325973646	0.694758301901232
Merged-chr17-6317482-4	chr17	6316989	6317989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166629)	promoter-TSS (NM_001166629)	-15.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	4.91292437732559	5.25623072630342	5.08556229687009	5.66791198633499	5.87796905911149	5.82489014794918	1.34609374313348	0.000111653337339988	0.00310821374820533
Merged-chr5-65096253-3	chr5	65095756	65096756	+	968.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-11312.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	3.67557016989516	3.73239693894045	3.92927407214884	4.21752688296909	4.35754456898025	4.19067204907668	1.46721394311421	0.00345048744882213	0.0467374506986149
Merged-chr11-70700261-4	chr11	70699757	70700757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	-102.0	NM_001252485	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	7.71033079989385	7.66932083080691	7.30648849001499	7.51077964520211	7.52949748689802	7.38665687726236	-0.149993703026988	0.535451311862881	0.853554403568845
Merged-chr1-97705497-3	chr1	97704987	97705987	+	772.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_173760)	TTS (NM_173760)	-43469.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.7770069007486	3.72502285173337	3.6520365353859	3.55602805832642	3.55568899862912	3.55955961361419	-0.573962149486996	0.295863979580801	0.692709629999205
Merged-chr13-47215104-4	chr13	47214622	47215622	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21119.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.70695838094042	7.19325075032068	7.21373525699279	6.70093453034788	6.73590584209187	6.69317040496816	-0.531120855497532	0.0544180404071148	0.299590863186133
Merged-chr11-80169822-4	chr11	80169331	80170331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 6 of 10)	B3|SINE|B2	-14041.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.69640219317338	7.30833099800534	7.54228821198979	7.51231801006819	7.6575063482575	7.65533854291782	0.123652386075483	0.605808788527025	0.883652954766237
Merged-chr2-125122394-4	chr2	125121899	125122899	+	831.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162418, intron 1 of 14)	intron (NM_001162418, intron 1 of 14)	1261.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	3.78169336080613	3.8481676686023	3.30716588462743	3.60056238887286	3.76950501235242	3.56598693267048	-0.0757442964369285	0.902117313554819	0.977397387787646
Merged-chr10-18056696-1	chr10	18056196	18057196	+	545.0	f1_c57bl6.idr	intron (NM_009048, intron 1 of 19)	intron (NM_009048, intron 1 of 19)	756.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	4.03479041758494	3.77045975189078	3.52563277435107	3.95719087936205	3.66316037285579	3.65819320658763	-0.106499061200394	0.853574855686094	0.965729404686806
Merged-chr5-135710205-2	chr5	135709705	135710705	+	781.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	MTD|LTR|ERVL-MaLR	21060.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	5.84668975914004	5.6660383147381	5.60331701207706	5.33083733137586	5.18208752322773	5.12947737425374	-0.953987248335551	0.00480912946423051	0.0596183022138993
Merged-chr2-84650766-4	chr2	84650268	84651268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007615)	promoter-TSS (NM_007615)	-28.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	7.81671488191458	7.77852068921394	7.49674379399517	7.75671845136292	8.16429282833005	7.71057646338615	0.274269870365191	0.278837189955041	0.676248136249515
Merged-chr2-160213317-3	chr2	160212839	160213839	+	786.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	114155.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.12963708322112	6.12438594639955	5.89234688441978	6.15024609169386	6.22567200371374	6.11913056840556	0.181810336344089	0.528268654961412	0.850495873730805
Merged-chr2-164879913-4	chr2	164879426	164880426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146129, intron 1 of 16)	CpG	558.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	8.33581024946885	8.21894830406311	7.90437705095129	7.96083842907386	8.05096052821222	8.05959362409907	-0.209359352210181	0.359287209615102	0.745474962829682
Merged-chr12-117728878-1	chr12	117728378	117729378	+	612.0	f0_balb.idr	intron (NM_175930, intron 21 of 27)	intron (NM_175930, intron 21 of 27)	-114983.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.932600900041	5.06809677210969	4.90314960651477	5.17914356089558	5.18376056544027	4.9692264870047	0.311782229002142	0.400745931318689	0.776971070978061
Merged-chr16-57423143-4	chr16	57422616	57423616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	PB1D11|SINE|Alu	69839.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.06720017937763	7.10677252418955	6.74894959149667	6.91925095030197	7.03448850236348	6.85472769313779	-0.0769366918290858	0.764853812057969	0.942093382415686
Merged-chr6-97292164-2	chr6	97291665	97292665	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 23 of 23)	MER58A|DNA|hAT-Charlie	-39385.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.76438727250025	3.43947016403956	3.76246724232091	3.60178774779073	3.49410975150682	3.83125751126496	-0.0640779759604752	0.911441561133189	0.980098870307889
Merged-chr4-150582632-1	chr4	150582132	150583132	+	584.0	f0_balb.idr	intron (NM_001085492, intron 12 of 22)	B1_Mus2|SINE|Alu	69542.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.84508070191193	5.99610752697426	5.65268193033217	5.80706820036618	5.99850741937908	6.01750265432652	0.166567941501998	0.592195099936842	0.878003422897225
Merged-chr4-53087420-2	chr4	53086920	53087920	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 11 of 49)	intron (NM_013454, intron 11 of 49)	72475.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.9037700074102	2.68926577649567	2.97556643525533	2.88388579885104	2.79801519115041	3.26668445199216	0.63241620909392	0.390169616919318	0.769518914518539
Merged-chr3-61268955-3	chr3	61268475	61269475	+	781.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95532.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	2.69260209886862	2.7164628296798	2.62146559025039	2.23434103217683	2.30014595888048	2.43846521621708	-2.47813817190505	0.0068109473995559	1
Merged-chr5-73548397-4	chr5	73547903	73548903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190733, intron 8 of 9)	intron (NM_001190733, intron 8 of 9)	57377.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	5.61312461078834	5.84552452973079	5.32404151649575	5.27618848420242	5.40093054889287	5.42017756735172	-0.492092978892225	0.160699145877577	0.533407313315039
Merged-chr11-83665469-2	chr11	83664969	83665969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013652)	TTS (NM_013652)	2885.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	3.90712971862768	3.89718714660351	4.14011544002793	3.86155412567329	3.7017910937108	3.66927460671371	-0.73274371119534	0.164985644107789	0.53962757369972
Merged-chr13-93230344-1	chr13	93229844	93230844	+	603.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37927.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	5.34574404784779	5.23543356127802	5.66083665637324	5.74558925056976	5.58230616981084	5.86755383553331	0.595450609881743	0.0817197927055439	0.37819004598279
Merged-chr7-31208355-4	chr7	31207869	31208869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	46011.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	6.25258792789531	6.50838768927522	6.37634381315091	6.01713908113079	5.89715236457666	5.899686967485	-0.754398570985402	0.00867383425002197	0.0912545707770677
Merged-chr10-40489552-2	chr10	40489052	40490052	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80810.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	5.59330312641875	5.98063751836859	5.46397378164794	5.41766699289636	5.45394080373502	5.15823031202016	-0.660463425500019	0.0671749961261672	0.338860083520226
Merged-chr2-165956490-4	chr2	165955990	165956990	+	896.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36147.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	7.2752714582344	7.36866006621605	7.19887951087727	7.64427074046992	8.1261343187393	7.53787623141719	0.757762495096449	0.00411960639753402	0.0530872245820057
Merged-chr4-132566873-2	chr4	132566373	132567373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	2806.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	7.16995518362327	7.0101077155347	6.62387476875106	6.62914455278363	6.49705433020969	6.13071020136307	-0.812859011889711	0.00719817176139367	0.079765886524955
Merged-chr17-35172649-4	chr17	35172150	35173150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001361501, exon 3 of 8)	5' UTR (NM_001361501, exon 3 of 8)	3402.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	7.2780433062488	6.94540133253706	7.32812447956792	7.35279920946774	7.60804182633963	7.41751582401618	0.412921866550713	0.101377427777972	0.424658327152108
Merged-chr13-36531687-4	chr13	36531211	36532211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 5 of 5)	MIRc|SINE|MIR	202766.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	4.89264781331722	4.8405559380922	4.75877177354752	5.03614690472073	5.03431411875496	5.01315886981769	0.420640801409679	0.262377415790484	0.660368420241499
Merged-chr17-22424203-4	chr17	22423694	22424694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331195)	promoter-TSS (NM_001331195)	-8.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	5.53929609300773	5.84153116592519	5.7348267088377	5.27453994479135	5.43987648183177	5.31138672390136	-0.685933151598009	0.0414354953552398	0.254466358957767
Merged-chr5-41708348-4	chr5	41707846	41708846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310589)	promoter-TSS (NM_001310589)	-167.0	NM_001310590	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	7.78493563510503	7.7083259494656	7.4573352490042	7.76159759503378	7.66884394528945	7.63456004751018	0.0369430279180665	0.872135898748101	0.970261003150518
Merged-chr2-157077734-4	chr2	157077241	157078241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1524.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	7.13978291226041	6.86679183330619	7.09426765597789	6.96107885440767	6.96368104897375	6.68938281919337	-0.231142042348577	0.371000323774101	0.75519717544329
Merged-chr3-38202053-4	chr3	38201554	38202554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6065.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.49421455926103	5.34112443073451	5.33476770611175	5.8438297231153	5.72584297516109	5.63819830247696	0.649379824015454	0.0454568266527871	0.269188786002783
Merged-chr12-70476340-6	chr12	70475788	70476788	+	799.777771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23134.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	6.0035738670508	5.59775725177107	5.80077404612642	6.41791024420713	6.06085359674311	6.26788016697917	0.759602413149901	0.0165285998792373	0.142268722328703
Merged-chr5-20945536-4	chr5	20945041	20946041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080977, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	-5448.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	6.6439959011992	6.74577558303114	6.90631868904697	7.11252465507051	7.1223221054455	7.08428086692969	0.529862154263639	0.0309479429730695	0.212924046172824
Merged-chr6-137413188-4	chr6	137412679	137413679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011216, intron 13 of 26)	MTE2b|LTR|ERVL-MaLR	2458.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	5.79274844061824	5.46300037503805	5.616305903983	5.11038619315568	5.33040579697429	5.59852420118885	-0.532944826039336	0.134151955924797	0.489755877000285
Merged-chr7-128132253-3	chr7	128131752	128132752	+	730.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021334, intron 5 of 29)	intron (NM_021334, intron 5 of 29)	2684.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	4.69501074394512	4.47494611962616	4.39363892725145	4.65000916140423	4.68449696467127	4.86510501137567	0.467747296128697	0.26917521053612	0.66629407200667
Merged-chr11-118450390-2	chr11	118449890	118450890	+	718.166626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	4605.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	3.23525910836322	3.35120483068057	3.54832932184506	3.31485215968048	3.17730123716376	3.56738424437233	-0.0930562723599863	0.881945999588456	0.972991471105994
Merged-chr12-100790346-2	chr12	100789846	100790846	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	11289.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	2.87554775253422	2.76737190398231	2.84969248213935	2.77670097585632	2.74298492298389	3.03857898357811	0.10931016033983	0.878736053176508	0.972000507462599
Merged-chr13-98778081-2	chr13	98777581	98778581	+	987.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 6 of 25)	intron (NM_172591, intron 6 of 25)	37368.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.26072948575339	4.31402148469874	3.94765166512861	4.19114502540412	3.90213105263468	4.06967809075419	-0.389987667655486	0.435777757842321	0.799370838506028
Merged-chr12-104225109-4	chr12	104224593	104225593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	10460.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	5.68935569410637	5.97565589385424	5.59749702424088	6.25964848474889	6.14959758221461	6.07314171960713	0.676721707761258	0.0293870069818137	0.206124945957961
Merged-chr1-182928624-4	chr1	182928086	182929086	+	973.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26202.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.94731660440114	5.15970322114925	4.80021758771959	5.27319918338683	5.07081302015928	5.16218236201948	0.378583430137461	0.318114396809666	0.711837104470585
Merged-chr2-132113845-3	chr2	132113331	132114331	+	915.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	31277.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.95318001931254	6.18110804096092	5.83424060776173	6.0879025633128	6.70455199937384	6.16210658838173	0.599385415875079	0.0719443051418691	0.35227273184106
Merged-chr3-27298459-4	chr3	27297962	27298962	+	935.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18615.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	2.97086245834036	3.02888339203372	3.0740307047206	3.45015843805388	3.15465796641417	3.48394019387637	1.46603978569491	0.0263519844482555	0.192764476656743
Merged-chr1-51476572-4	chr1	51476097	51477097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	1802.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.23029865170687	5.12121064487855	4.85179776635531	5.44734492296837	5.47826054848397	5.25312924243789	0.6306604278094	0.0851595073833646	0.386281742823539
Merged-chr3-88403089-2	chr3	88402589	88403589	+	959.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	7308.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	5.63240718416387	5.55950920738707	5.94582959622593	5.59220634662067	5.61886165660299	5.72321538523217	-0.12694483691778	0.697293529047096	0.919874864928276
Merged-chr7-45020345-2	chr7	45019845	45020845	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009101, exon 3 of 6)	exon (NM_009101, exon 3 of 6)	748.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	2.45747857990058	2.42676277500121	2.9100101448892	2.78678862006911	2.45666275566077	2.74965675668744	0.31076214902122	0.708453982785902	0.923708659245088
Merged-chr8-79029447-4	chr8	79029028	79030028	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	CpG	1091.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	5.72752661918359	5.58792615584098	5.43114926068143	4.49414290740771	3.99658380301576	4.24794253232924	-3.16123549931726	2.91396409607824e-12	5.1478795011991e-10
Merged-chr15-55114164-4	chr15	55113696	55114696	+	705.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-614.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	5.28853684485215	4.90848379625383	5.09335430059118	4.91310886969483	4.8667319054934	4.94768099050717	-0.431248878117867	0.26020568558635	0.657649400461384
Merged-chr17-57338612-2	chr17	57338112	57339112	+	564.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20074.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	6.31462590821198	6.16644041128145	5.7802315484562	6.20789781577963	6.45399705821112	6.36982718310217	0.383251343695547	0.214223446649582	0.607432426267453
Merged-chr1-55027528-4	chr1	55027037	55028037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031179)	promoter-TSS (NM_031179)	-59.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	8.67266194261751	8.8358729483244	8.28611460174382	8.49873147597134	8.45684487756505	8.25071144178942	-0.30073725521152	0.21052955648505	0.602667744727974
Merged-chr14-18238481-4	chr14	18237995	18238995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011584, intron 1 of 7)	CpG	611.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	9.30567693416544	9.36179517825158	8.79465045007255	8.959817211052	9.17570329317403	8.75455536619142	-0.278511685585956	0.264342751046616	0.662253684674278
Merged-chr7-128110487-2	chr7	128109987	128110987	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008401, intron 16 of 29)	Lx8b|LINE|L1	-19081.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	2.9573820392568	2.90956088882465	2.7467559544507	2.90862457169852	3.09872780893153	3.06676649340181	0.711618371271542	0.313592585622434	0.708121563861612
Merged-chr5-109996441-4	chr5	109995953	109996953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145563)	promoter-TSS (NM_145563)	-74.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	4.41289746035134	4.43126918262441	4.35823219938835	4.32011562641822	4.36704670464854	4.29033191442462	-0.194196532559487	0.65843730588736	0.905014667687917
Merged-chr15-76672444-1	chr15	76671944	76672944	+	738.0	f1_balb.idr	intron (NR_152559, intron 1 of 8)	intron (NR_152559, intron 1 of 8)	801.0	NM_033371	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	4.37331281260023	4.57828792308881	4.42399645181418	4.24642393556483	4.27499205138751	4.49051461827984	-0.339808375622936	0.445937293812664	0.805486700463772
Merged-chr12-80112103-2	chr12	80111608	80112608	+	973.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	905.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	6.68713139864168	6.92198798471312	6.66354273220937	6.90768280954416	7.01265136506802	6.46907036359798	0.0971823434177029	0.732778499462888	0.931881910183524
Merged-chr4-137953602-4	chr4	137953168	137954168	+	892.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-39788.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.0936536268858	3.86763173299181	4.18013486071023	4.32832113828248	4.6417535051434	4.29530344969838	1.07652829794517	0.0257089253156621	0.190066068195298
Merged-chr11-96400068-4	chr11	96399506	96400506	+	889.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34248.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	5.34753909600351	5.49485867991898	5.58237446375366	4.70178705530541	4.69527622254331	4.69650889007375	-1.65324966816662	1.09125572993915e-05	0.000431975293895226
Merged-chr11-101972935-4	chr11	101972437	101973437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5922.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	6.6786778715313	7.06313683797134	6.57428791727711	6.80537126033228	7.0093311354635	6.7358724406066	0.0965438010104088	0.731645668089394	0.93149477860307
Merged-chr5-139252613-4	chr5	139252123	139253123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	299.0	NM_026269	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	7.05126341582414	6.56887739135388	6.60032453735154	7.05440444959142	6.82319301699723	6.89727933095054	0.248598928875323	0.377563292869155	0.759978294360939
Merged-chr11-49846131-4	chr11	49845617	49846617	+	884.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-634.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	6.71785593694226	6.96756291650297	6.90398984828912	7.51903692006006	7.97715233791165	7.40346435962695	1.19037650690434	1.19257960421349e-05	0.000465223458543817
Merged-chr7-13009943-4	chr7	13009426	13010426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-74.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	5.78573690062625	5.9485453916039	6.40145253591481	6.1355795099587	6.04810741156659	6.49400067986037	0.290544362312038	0.385764700166596	0.76666449726431
Merged-chr18-15202413-4	chr18	15201919	15202919	+	962.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50973.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	4.12625199958789	4.37845881524534	4.19687667892517	4.26750129533158	4.30084659284948	4.71205845287251	0.499567417826951	0.293729273999307	0.690424156263798
Merged-chr8-3280583-2	chr8	3280083	3281083	+	718.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	-966.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.5031163668702	3.91812372831128	3.73240576804366	3.91107546007704	3.70822420398676	3.69645935495608	0.143689783949072	0.797598218619497	0.951799370596145
Merged-chr15-67145597-3	chr15	67145102	67146102	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009177, intron 2 of 8)	(TG)n|Simple_repeat|Simple_repeat	31280.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.73383583455624	2.7583425263589	3.07155578245347	2.71893969196098	2.73346561411195	2.97587274018047	-0.237252986364582	0.747395825448484	0.936600911319824
Merged-chr1-37488548-2	chr1	37488048	37489048	+	773.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024017)	promoter-TSS (NR_024017)	57.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	3.66626479602851	3.71072070205638	4.01337398472166	3.78711096428388	3.7401388367054	4.24974482108846	0.430407929579548	0.440193783326138	0.801690691713389
Merged-chr9-104039157-4	chr9	104038653	104039653	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028721, intron 23 of 26)	intron (NM_028721, intron 23 of 26)	23968.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	6.22569972245098	6.46769009239627	6.20207701338163	6.35863374197901	6.28143654485929	6.17663523905231	-0.0542312300539127	0.84781203586585	0.964318271116593
Merged-chr16-91452186-6	chr16	91451709	91452709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12895.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	7.15311623461572	7.24768654395306	7.10735209944	7.26578688117774	7.45377500493737	7.35427256223259	0.282066990965389	0.227151936315281	0.622281668659856
Merged-chr11-89004056-2	chr11	89003572	89004572	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	4669.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.87536059721003	7.03819694031772	6.90731403322877	6.36547139056149	6.67221201694217	6.25751026377056	-0.762185242325179	0.00592101249362266	0.0691280493292205
Merged-chr2-173771908-4	chr2	173771403	173772403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34332.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.51666013572638	5.70198038154012	5.64933308591035	5.33019448825186	5.43981753052435	5.36714694361887	-0.46005899601027	0.161672830247265	0.534783258167936
Merged-chr15-25303708-2	chr15	25303208	25304208	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110056.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.49902286379754	5.45876851760339	5.10769725956095	5.38966094203378	5.56729068965199	4.9803754008317	-0.0499682338123405	0.897170852262048	0.975955240159241
Merged-chr7-19255918-2	chr7	19255418	19256418	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15936.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	2.66291610709833	2.66322907970039	2.97484753656336	2.82389147430336	2.68005889755697	3.2612312693182	0.819845687605668	0.289307415580431	0.686908016425067
Merged-chr1-131931017-4	chr1	131930500	131931500	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145804, intron 6 of 6)	intron (NM_001145804, intron 6 of 6)	20542.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	6.83673373966386	7.52369954858727	6.84356355506247	6.85380451435349	7.4753283394829	6.96195771292959	0.0237362501074174	0.942705012630492	0.987202156853573
Merged-chr2-114200340-4	chr2	114199825	114200825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	1107.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	8.08961476891171	8.12080962176619	7.64226979120295	7.91646275774281	8.1661410979973	7.60945888994764	-0.0707096301130057	0.791679503678326	0.949801788897381
Merged-chr16-94574801-4	chr16	94574309	94575309	+	867.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3902.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.47003513494379	4.3974161604118	4.26856752444939	4.40845889625102	4.25544367439244	4.38199619838139	-0.108112896449088	0.808103866959364	0.954615579876099
Merged-chr6-87539904-2	chr6	87539404	87540404	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6645.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.19768161150492	3.74567841060552	4.07553119125044	4.02186118807926	3.71231160206447	3.95337810858918	-0.366905565939978	0.494142679750627	0.831815174927983
Merged-chr11-120598523-4	chr11	120598027	120599027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011568)	promoter-TSS (NM_011568)	-5.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	8.26150846593554	7.62333244904915	7.57738850551468	7.96109696109701	7.37375760597153	7.3896037421977	-0.371440658010748	0.23034869761312	0.626192360633515
Merged-chr1-165765295-7	chr1	165764718	165765718	+	876.397949	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	B4|SINE|B4	1460.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	7.51806517637977	7.86998554158372	7.52842930132115	7.48343052974156	7.85411562403281	7.39431185749669	-0.0746986630087031	0.775348160860216	0.9446501619605
Merged-chr13-41552834-4	chr13	41552305	41553305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-53411.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	7.56921725938819	7.62473340327909	7.43282214505336	7.70798292471839	7.76900034964136	7.4682534891048	0.164006912945812	0.479656244756343	0.824363039494411
Merged-chr18-20740308-3	chr18	20739819	20740819	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	6085.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.85809348112252	5.41054204999791	5.39730179689694	4.94919713376433	5.08443515071702	4.94295207612367	-1.1627126027524	0.00198045371284474	0.0307443269661167
Merged-chr4-124646792-3	chr4	124646303	124647303	+	737.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10843.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	3.49126429152721	3.37495465458971	3.68903785477586	3.90411731841378	3.80088910932817	3.85973735085782	1.16320744788631	0.0363201108807186	0.234527687890954
Merged-chr6-49263435-5	chr6	49262950	49263950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	CpG	602.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	9.19606955281712	9.76906658961438	9.14051362151185	9.11433546842241	9.43769259619233	9.32363098844147	-0.144637900503015	0.568417655807683	0.868549528189122
Merged-chr5-148499820-3	chr5	148499365	148500365	+	766.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51808.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	2.92852263195577	2.79190196249652	2.78055439066384	2.90272816971697	2.68348600694706	2.91567767164732	-0.0185643081119698	0.979460938875953	0.995242497433086
Merged-chr16-92713991-4	chr16	92713500	92714500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-16671.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.39384875182539	5.02205751089372	5.04955744175346	4.86447958495412	4.4707531032104	4.4142130058945	-1.26843361682527	0.0031391810829342	0.0436068413270099
Merged-chr19-5232821-4	chr19	5232315	5233315	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	40304.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	4.44471483117216	4.1917725272742	4.56925588193839	4.60933751303749	4.5217557256215	5.00857949474208	0.794923485028804	0.0829238271153255	0.380987557121549
Merged-chr10-80741251-4	chr10	80740776	80741776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	999.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	7.15662054680834	7.25047095480792	7.31756148034521	6.88674270425616	7.55087212188842	7.39623425013466	0.107239675712474	0.698845754698293	0.920452394037037
Merged-chr19-11966445-5	chr19	11965954	11966954	+	968.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	610.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	5.08486348388607	4.89072901918656	5.0734395012635	4.91894674085355	4.73708244809138	5.10439305679521	-0.217527723668901	0.575112361857427	0.87094931637326
Merged-chr1-157412676-4	chr1	157412196	157413196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-101.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	5.93284923478137	5.82775300773593	6.30680002178231	6.18212802437451	5.62720450852695	6.11379569749718	-0.0687699396430837	0.841573254194138	0.962988397967269
Merged-chr19-29469245-2	chr19	29468745	29469745	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	52742.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.78188706729675	6.52498268677508	6.4733231630192	6.87046297052937	6.83364967732267	6.4170085446577	0.200549164766924	0.481811359204606	0.825208669475694
Merged-chr5-76304888-4	chr5	76304366	76305366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289826)	promoter-TSS (NM_001289826)	-10.0	NR_152171	665055.0	Mm.425276	NR_152171	ENSMUSG00000098449	Gm7467	EG665055	predicted gene 7467	ncRNA	7.68621885896754	7.7630149488478	7.62584651761277	7.66097184286926	7.30561614041955	7.33156648486651	-0.365737848732173	0.125405633804191	0.473876111606682
Merged-chr14-45691066-5	chr14	45690548	45691548	+	734.616638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32905.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.47948087710728	3.48703420564657	3.58127667115267	4.16126163466268	3.89093411091185	4.01482374056885	1.71190363950161	0.00177725237788447	0.0281894044717901
Merged-chr15-58016442-2	chr15	58015942	58016942	+	679.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	17852.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	5.22557740557707	5.15969701353201	5.16599250354821	5.39727695125974	5.5568660384008	5.36080297874756	0.522896369663677	0.126558477670576	0.475549804679232
Merged-chr19-36926077-4	chr19	36925556	36926556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-23.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	8.70908591779166	8.8877670126237	8.6391015349162	9.5522046153414	9.39144840591414	9.17765835979925	0.862905303715839	6.11880985306492e-05	0.00187250434076435
Merged-chr15-91180067-4	chr15	91179564	91180564	+	866.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	11943.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.53791257702353	6.91100801112003	6.51007018654555	6.73458862660032	6.82723914577728	6.6394150529028	0.103438502412259	0.707814605601907	0.923566531330147
Merged-chr13-58274469-4	chr13	58273979	58274979	+	931.8875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019832)	promoter-TSS (NM_019832)	-291.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	4.34610754691616	4.03362777408292	4.42689156524371	4.34632479105167	4.2358100615429	3.92767881559837	-0.232572183640327	0.64232863457313	0.899398873915991
Merged-chr9-120054999-4	chr9	120054515	120055515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	13281.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	5.0718287498142	4.86782771343278	4.93139506861498	4.73974817376274	4.39300191922205	4.69492558117082	-0.811943721077457	0.0483672719088433	0.278939836497854
Merged-chr15-80034480-2	chr15	80034020	80035020	+	823.333374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19712.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	6.43012991333481	6.56099873247214	6.72573016344925	6.93116180218125	7.01507112219696	6.97151070596414	0.631772252150329	0.0130882760648091	0.121389369274906
Merged-chr11-60880139-2	chr11	60879639	60880639	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1101.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	4.05000284299386	3.66447198238369	4.42814292680899	4.08681366546707	3.93754840942205	4.1209501420037	-0.0832456090879163	0.880032995762761	0.972376510655563
Merged-chr2-166806140-1	chr2	166805640	166806640	+	1000.0	f0_balb.idr	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	559.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	8.44777022154304	8.75960142530687	8.18861284930637	8.27257630375492	8.36344559733215	8.08141907810748	-0.34131372480828	0.164467697695818	0.539056532472275
Merged-chr5-148497410-1	chr5	148496910	148497910	+	786.0	f1_c57bl6.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	54263.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	3.12154906763628	3.35680738852945	3.50030906819846	3.26735580330093	3.04932049180026	3.51926626011988	-0.18061128618431	0.78405043160508	0.947434735607995
Merged-chr17-26503142-4	chr17	26502634	26503634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.45434615770142	8.41899004621593	7.95030896947018	8.20085684708781	8.29250929640503	7.94173004962709	-0.200080029515636	0.421744616656419	0.790692759739247
Merged-chr10-117082283-2	chr10	117081783	117082783	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 5 of 9)	intron (NM_177798, intron 5 of 9)	-18431.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	5.04447299498207	5.05031572258767	5.08621649534923	5.43033718375301	5.4273965514689	5.34790679282636	0.702660346807521	0.041746700733904	0.255528871168654
Merged-chr13-45964036-9	chr13	45963577	45964577	+	997.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 1 of 6)	CpG	914.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	8.08332458303571	8.18185569616125	8.05541233859693	8.0015130183478	7.9790911266202	8.12527355799794	-0.108152075047304	0.605716037767868	0.883581756351046
Merged-chr17-35972294-4	chr17	35971799	35972799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145487)	TTS (NM_145487)	-2549.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	4.80476722543376	4.7240147470147	4.77705571950319	4.84145157272872	5.05561356361319	4.76437342317723	0.305106437201836	0.438399928112248	0.800526273226035
Merged-chr3-89730697-4	chr3	89730179	89731179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-39.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	7.59868373811031	7.90284370759879	7.66147151474269	7.74992211407779	8.10799672053488	7.67154562552602	0.193732038983451	0.437497614924191	0.799984650974884
Merged-chr11-70865790-4	chr11	70865290	70866290	+	946.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	21029.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	4.01972481888202	4.22439300321566	4.41039457418754	4.30230728240513	4.08457102424261	4.12544129762159	-0.129170976747446	0.78901888401872	0.949092571737679
Merged-chr18-14812402-3	chr18	14811900	14812900	+	614.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001100449, intron 6 of 14)	CT-rich|Low_complexity|Low_complexity	29155.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	3.18752925331606	3.523597945132	3.49739659798345	3.41517751273987	3.36921675462757	4.03601501973876	0.796125846314374	0.222147984517036	0.617070381781888
Merged-chr13-112506010-1	chr13	112505510	112506510	+	1000.0	f1_balb.idr	3' UTR (NM_010560, exon 17 of 17)	3' UTR (NM_010560, exon 17 of 17)	41940.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	3.43286516544265	3.3161844009899	3.74451016918537	3.4124469523104	3.58368735297574	3.85917292352254	0.435569965426208	0.472692355757306	0.820550293768681
Merged-chr11-32231320-1	chr11	32230820	32231820	+	594.0	f0_balb.idr	TTS (NR_104306)	TTS (NR_104306)	4815.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	2.60773528596101	2.37806317912463	2.70683168400442	2.37404478036557	2.33957926040222	2.41218900390879	-1.24081418917983	0.138272155729948	1
Merged-chr17-31296686-4	chr17	31296203	31297203	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001242427, exon 1 of 20)	5' UTR (NM_001242427, exon 1 of 20)	479.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	6.16116476915922	6.23262403429409	6.24155547253015	6.64475778781283	6.43375352979779	6.26047487229406	0.41273971550478	0.142276715717945	0.503575692775482
Merged-chr9-79792256-2	chr9	79791756	79792756	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133718, intron 1 of 6)	intron (NM_133718, intron 1 of 6)	1174.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	3.66277067334105	3.84269688465289	3.46593719579465	3.61206160944513	3.53718265214481	3.53852404291089	-0.388060900248677	0.497871469753397	0.833817084327451
Merged-chr13-13955116-2	chr13	13954616	13955616	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001362405, intron 1 of 12)	CpG	442.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	5.69580198247209	5.85217391874884	5.73158716111655	5.66123897969819	5.11251246202486	5.33246026586978	-0.711524207366529	0.0436256127396505	0.26245390679205
Merged-chr2-49349898-4	chr2	49349379	49350379	+	929.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-101607.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.64712118934659	4.21606880625523	4.00103927880205	3.73496772211478	3.55906410523385	3.54787963564362	-1.17162251943129	0.0421602453523291	0.257095617096123
Merged-chr4-138345130-4	chr4	138344658	138345658	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028176, intron 2 of 3)	intron (NM_028176, intron 2 of 3)	-18862.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	2.98176824669854	3.07447132783789	2.98597989566213	2.74851443990208	2.64892683926032	2.75049461665746	-1.60057050750337	0.029348939486226	0.205977273681671
Merged-chr19-5925685-3	chr19	5925145	5926145	+	893.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-829.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	5.45778816199712	5.16859373236846	5.54754703685432	5.77911192756135	5.30608099791315	5.46798669065014	0.262724390949657	0.469782635124234	0.819126978705139
Merged-chr3-28107658-3	chr3	28107157	28108157	+	925.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	123486.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.34377149294474	4.40161025719039	4.4013569623883	4.51826113608442	4.53103212309536	4.78346916416619	0.566299605347973	0.188158368255858	0.573574205225435
Merged-chr16-55814360-5	chr16	55813828	55814828	+	677.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 10 of 12)	exon (NM_001159394, exon 10 of 12)	7810.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.95257439428356	3.01730185213485	3.08284601607651	2.97877397193329	2.82295581967299	3.03915816672473	-0.339339729926357	0.617874636404977	0.889003221204315
Merged-chr6-29212352-4	chr6	29211851	29212851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011829)	promoter-TSS (NM_011829)	-54.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	7.1655582360083	6.85378510816322	6.61351989117855	7.03559169230994	6.60739824205162	6.65551384453191	-0.192404761152266	0.514531674083022	0.843107848235413
Merged-chr18-12926626-3	chr18	12926127	12927127	+	900.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15214.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.6872805072117	4.90587890515087	4.44257126122409	4.97373713924556	4.96671752545217	4.69239148610708	0.420280271094862	0.321534762134592	0.714904288597718
Merged-chr12-85622987-2	chr12	85622487	85623487	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	22969.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	2.34016206692799	2.19918209546795	2.43559496215311	2.48455930547124	2.54539575308193	2.57324585133961	1.35977808188652	0.105642972586093	1
Merged-chr7-123367842-4	chr7	123367314	123368314	+	791.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	2101.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	5.97457146541022	5.91386541316682	6.04311877403429	5.78051503619136	5.96515306671244	6.18581691657103	0.0102110961467727	0.97323527215899	0.994009507000273
Merged-chr9-63706520-4	chr9	63706000	63707000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	51494.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	4.33785851248181	4.11352351478944	3.95872830918736	4.3921322264129	4.16259930558166	4.27577923370059	0.336368056451552	0.48743553565133	0.828445729506224
Merged-chr16-17368197-1	chr16	17367697	17368697	+	678.0	f0_balb.idr	intron (NM_001001983, intron 7 of 54)	intron (NM_001001983, intron 7 of 54)	36826.0	NM_001331047	15160.0	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	2.81328189336869	2.76816792003346	3.02833887064656	2.7291724060499	2.686363945632	3.04400153066215	-0.234774289820168	0.749743506643827	0.93745630986217
Merged-chr2-44925716-2	chr2	44925216	44926216	+	858.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64094.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	6.36581970414958	6.64601311218795	6.53483888243993	6.70310670346992	7.11959542458574	6.90822953532991	0.636528578171834	0.020930068117406	0.166400640924242
Merged-chr5-150522645-4	chr5	150522165	150523165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009765)	promoter-TSS (NM_009765)	44.0	NM_001081001	12190.0	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	6.50728312019256	6.80524911621092	6.59730044784471	6.71921833575123	6.82150575679298	6.45751939681221	0.0618053647042353	0.822598677580136	0.958134952997982
Merged-chr12-91581368-2	chr12	91580868	91581868	+	892.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	8281.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	5.86706273149645	5.9338409078351	5.67814175214099	6.23982576208446	6.06645642798009	5.84995766123396	0.399394104945089	0.198410779658448	0.586736605505465
Merged-chr9-107696296-4	chr9	107695829	107696829	+	823.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 2 of 17)	intron (NM_011349, intron 2 of 17)	9262.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	2.17406057977566	2.14332557767129	2.51158144283536	2.11392457968649	2.1073728913769	2.34031314096658	-0.646823669726454	0.475159833855207	1
Merged-chr7-139434223-4	chr7	139433694	139434694	+	661.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	33700.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	4.29845185438536	4.13354688935886	4.29562155940404	3.94361201693697	4.28962732360981	4.27540546356361	-0.167691429304556	0.727291339877851	0.930141386998351
Merged-chr6-29266890-2	chr6	29266390	29267390	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5598.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	2.44688142927729	2.51493028813436	2.67363243648609	2.54730040937228	2.49633405837471	2.68611889188712	0.178788422305048	0.818419937476205	1
Merged-chr6-52401636-4	chr6	52401144	52402144	+	891.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86812.0	NR_038163	70593.0	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	3.3452718539258	3.04117410479656	3.0230100030381	3.01865392546391	2.67001687833516	2.77494740723431	-1.54722079217193	0.0411159125476801	0.253064046990707
Merged-chr11-93885293-4	chr11	93884812	93885812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	454.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	7.80955258039149	7.87460734522929	7.82151995081881	7.68017231506236	7.58788321379152	7.28453000003768	-0.433265240229764	0.0637433353224379	0.328994954702847
Merged-chr11-87470991-4	chr11	87470482	87471482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	43391.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.0108946215696	6.96996067534007	6.63014521693206	6.87822197485103	7.03777642166562	6.65456689699585	-0.0220321205389871	0.935815903592463	0.985953563515988
Merged-chr17-37046052-4	chr17	37045567	37046567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019439, exon 1 of 23)	5' UTR (NM_019439, exon 1 of 23)	101.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	5.53402052330655	5.51665912960663	5.46607648012506	5.70632038031589	5.4016801808136	5.13060010928676	-0.123615778471645	0.728187898887309	0.930438087415967
Merged-chr14-47373884-4	chr14	47373381	47374381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	21.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	8.4359777689332	8.37868172894274	8.16444298199265	8.24068973112268	8.48951373003814	8.05593846830746	-0.0750456040972854	0.747189257943468	0.936581057740955
Merged-chr3-89912466-4	chr3	89911944	89912944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	752.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	8.02668213018802	8.34304145777232	7.80712125905683	7.92182683807888	8.15597176030105	8.15865356776988	-0.00274340839195635	0.991115307120998	0.998181077898837
Merged-chr8-125083985-4	chr8	125083546	125084546	+	716.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	29851.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.15105543882408	6.14552870764319	6.39451469376192	6.30891269069093	5.9148031009588	6.05214415267928	-0.216858965853343	0.472385191291979	0.820550293768681
Merged-chr5-143550298-2	chr5	143549798	143550798	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133703, intron 1 of 1)	intron (NM_133703, intron 1 of 1)	1592.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	3.27532032002126	3.31846042788424	3.3002670719576	3.30987758949605	3.17615936584546	3.13699485096095	-0.359731899586051	0.562593728877931	0.865745518569294
Merged-chr2-31768784-1	chr2	31768284	31769284	+	545.0	f0_balb.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	8611.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	6.94427874864256	7.11629353425191	7.0767465866708	6.67283775646099	7.14060292721671	6.87595258932053	-0.194862558211605	0.465211217796813	0.816844646665488
Merged-chr8-120702217-4	chr8	120701716	120702716	+	861.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	33896.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	3.65681139924153	3.40803228517324	3.67537281357467	3.44551311544072	3.66913235112688	3.74459046570273	0.147530821419734	0.797458719149571	0.951799370596145
Merged-chr16-17796514-4	chr16	17796011	17797011	+	924.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-771.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	4.09577777285234	3.85899072240982	4.23001292669671	3.98742347818662	4.10009015785933	4.02365343790114	-0.0643894001021689	0.897305265968625	0.975979061797612
Merged-chr2-118513137-4	chr2	118512633	118513633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31454.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	4.96273957790172	4.2172339802197	4.10146770339107	5.30639993221702	5.01903667030312	5.09834249082007	1.50854351000346	0.104571360003331	0.431563025650091
Merged-chr5-113626623-4	chr5	113626122	113627122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16981.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.55159736665735	4.64266065167507	4.59414774812785	4.64658447883261	4.3684146582863	4.40383780035873	-0.293871596182775	0.492515535544377	0.831122310740083
Merged-chr12-34847492-4	chr12	34846990	34847990	+	878.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69605.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.40700741020837	4.43594425729566	4.48503966507272	4.54220884029989	4.48481727018085	4.59234712346016	0.241111292644957	0.568334983471495	0.868549528189122
Merged-chr4-132533665-4	chr4	132533158	132534158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007512, exon 2 of 4)	5' UTR (NM_007512, exon 2 of 4)	1756.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	6.0612386829968	6.00190755749999	6.34627154659378	6.07420566151466	6.85112972918956	6.46077928009356	0.61429565172922	0.0654794007915191	0.333766845200975
Merged-chr5-99460216-4	chr5	99459710	99460710	+	852.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-207283.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.50940976471042	4.76101930571489	4.53122816512604	4.27792987019655	4.58187251410975	4.71650739391692	-0.183485086877615	0.678288718536042	0.913379457468915
Merged-chr2-26237448-4	chr2	26236880	26237880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	19.0	NM_153559	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	5.28542102596394	5.4437298998412	5.20399163132844	5.16540222716752	5.11505515361972	5.33157150840827	-0.247690602201105	0.482881453043153	0.825867492178998
Merged-chr4-135921587-3	chr4	135921099	135922099	+	858.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	873.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	5.64428971222242	6.01128967901774	5.79263510514607	5.69653925575871	5.89614231243743	5.6966743513848	-0.0984219674493317	0.759749254693225	0.940572672765463
Merged-chr3-104220539-4	chr3	104220049	104221049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159354)	promoter-TSS (NM_001159354)	-143.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	4.14179262557048	4.01919296005846	3.96560139701339	3.67726920448981	3.82628533215277	3.93653150551245	-0.719830347807511	0.160944979790163	0.533655406039239
Merged-chr13-37946979-4	chr13	37946475	37947475	+	814.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033615, exon 9 of 10)	non-coding (NR_033615, exon 9 of 10)	47233.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.501795058993	3.14522279885915	3.55276522594963	3.39254292504194	3.08584767067927	3.17999397136426	-0.732494317837578	0.26376378916367	0.66173965412563
Merged-chr2-6359830-4	chr2	6359333	6360333	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181399, intron 1 of 13)	MER3|DNA|hAT-Charlie	7097.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	3.48957642516304	3.40337809110606	3.41960025256522	3.77321236701233	3.61659732664881	3.60394147766746	0.820314614469094	0.148080869490432	0.513526720248328
Merged-chr12-70946818-4	chr12	70946301	70947301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019785, intron 4 of 12)	intron (NM_019785, intron 4 of 12)	8944.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	7.12078579641482	6.94707830433136	6.93987551078733	7.33263939022275	7.4098708447811	6.86338662327561	0.342624368184021	0.203240615863439	0.593108413920774
Merged-chr2-60928069-4	chr2	60927562	60928562	+	942.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	35142.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	2.68426408120518	2.70047386243595	2.58504323432827	2.81962665816615	2.5058208690689	2.78668512332512	0.259960245548817	0.735881887214119	1
Merged-chr6-125365814-2	chr6	125365272	125366272	+	921.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	14732.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	3.67325274922666	3.36561228852829	3.81141342155004	3.47530661791706	3.40268965182734	3.78522343704026	-0.234178609668831	0.697132600162583	0.919859963548202
Merged-chr2-35444663-4	chr2	35444197	35445197	+	831.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	16752.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.41466161627262	5.66299054092968	5.6384754632885	5.18071632995454	5.08817444093642	5.01974763956275	-0.940483821829945	0.00717351353741329	0.0795646113597821
Merged-chr18-10129353-2	chr18	10128853	10129853	+	726.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009071, exon 9 of 33)	exon (NM_009071, exon 9 of 33)	52439.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	4.06949531752365	4.19902681914756	4.21600853953766	4.05618047754904	4.09604216258817	4.28290887619204	-0.0523616549129027	0.911935185345955	0.980211734893551
Merged-chr19-34725551-3	chr19	34725048	34726048	+	972.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	21563.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.67019877857501	4.86557874065973	4.9936115344658	4.54105997148025	4.41584039386565	4.5875733467809	-0.80352811118461	0.054028023774549	0.298173628854061
Merged-chr7-137406251-2	chr7	137405751	137406751	+	866.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	intron (NM_029886, intron 1 of 3)	4505.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	3.60506619377747	3.57122325354431	3.94694030421799	3.68482581071609	3.65945670623975	4.14386072510288	0.416176160201224	0.468923093771153	0.818798418516974
Merged-chr17-34030009-2	chr17	34029509	34030509	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077709, intron 5 of 7)	intron (NM_001077709, intron 5 of 7)	1681.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	3.6858030356276	3.20568309828305	3.83694220116697	3.3648094445214	3.20580139381827	3.66922111266879	-0.635944196875006	0.334325978995753	0.724883973366998
Merged-chr7-30394615-4	chr7	30394196	30395196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19092.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	6.80674410435679	6.76829553742205	6.43994110338027	6.83086061188281	6.99070373664199	6.69772503452971	0.250464881632603	0.355750111856433	0.742537446565912
Merged-chr6-124274925-2	chr6	124274425	124275425	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29726.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	5.58757237794639	5.43348057189045	5.96073538061078	5.36512451775206	5.26822201916014	5.84721161199745	-0.306355112303965	0.416031518137588	0.786932270088484
Merged-chr7-140942525-2	chr7	140942025	140943025	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145387, exon 2 of 14)	exon (NM_145387, exon 2 of 14)	1134.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	7.55904490155905	7.53534054247358	7.38025163062908	7.6368447823976	7.5006881214029	7.60985245765321	0.120474300840075	0.59222722256948	0.878003422897225
Merged-chr2-38164742-2	chr2	38164242	38165242	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 2 of 21)	intron (NM_146122, intron 2 of 21)	122642.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	3.99502231603353	4.01594880736017	3.73560275507074	4.01353546423471	3.74491036003744	3.86083314244814	-0.167169901431953	0.75069719534116	0.937588367655538
Merged-chr3-142562217-2	chr3	142561717	142562717	+	965.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355403, intron 3 of 11)	RMER17C|LTR|ERVK	1861.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	6.28230001745114	6.19168340546084	6.58599971515637	6.2724300316452	6.3271014214248	6.40617079486346	-0.0316143253473079	0.911722776403554	0.980175314017171
Merged-chr5-118633598-2	chr5	118633098	118634098	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72879.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.24156299092997	4.13320963658165	4.17046278384104	3.77739049042877	3.58418285351808	3.50430410665648	-1.7716135458206	0.00118372568563928	0.020563731807796
Merged-chr9-98601708-4	chr9	98601188	98602188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025485)	promoter-TSS (NM_025485)	-9.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	4.93117241527382	5.29049180818517	5.03604324007385	5.33013168829202	5.05997388546181	5.20367761674296	0.202977955054509	0.589509839908837	0.876882582082885
Merged-chr7-88192918-4	chr7	88192415	88193415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-85170.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.52922181736916	5.63389750002515	5.71572002624534	5.6191135227622	5.56029409816349	5.44349973440153	-0.142918074929734	0.657275873575922	0.904798742244684
Merged-chr15-27783276-4	chr15	27782764	27783764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-101722.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.66671967702566	6.85052940731261	6.5087522193502	6.23360466348023	6.56379876294886	6.27651667098729	-0.502246752323393	0.0783140102715473	0.369491504120827
Merged-chr11-29544157-1	chr11	29543657	29544657	+	651.0	f1_c57bl6.idr	intron (NM_001282118, intron 12 of 13)	B3|SINE|B2	-3793.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	2.63326711742566	2.8113947424453	2.83298062063321	2.87761345950217	2.49143401505261	2.84599451957658	-0.0719707497565408	0.926081576595031	0.983305773102619
Merged-chr19-37428762-3	chr19	37428301	37429301	+	939.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-6040.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	2.77324616267961	2.63535247689312	2.86812677983596	2.7376749278772	2.92079345895976	2.82002527618004	0.374727452395713	0.60684942010727	0.884349416059017
Merged-chr17-10392891-4	chr17	10392400	10393400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63316.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	8.18444826505212	7.84605849822977	7.77056320098285	7.6869158612482	7.55855106347778	7.56832228202789	-0.497049610113284	0.0366525755982378	0.235623604658837
Merged-chr14-55680830-3	chr14	55680327	55681327	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145705, exon 4 of 9)	exon (NM_145705, exon 4 of 9)	990.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	5.95582080394182	5.99448510515414	5.79200299395619	6.08074514885277	6.40254325178029	5.80056810970895	0.36454669172801	0.261000383039155	0.658521360261207
Merged-chr2-5712658-2	chr2	5712158	5713158	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	2104.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	6.0989943548705	6.22314845901115	6.02149231049703	5.80449949617469	6.26594313820811	6.03658064196555	-0.107771150708036	0.72733062543048	0.930141386998351
Merged-chr17-43567498-2	chr17	43566998	43567998	+	570.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	-953.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	3.80279216893908	3.38583041450126	3.70966638025499	3.09765634867488	3.3603627452265	3.3550064013645	-1.38469477398405	0.031485229820029	0.214968655359397
Merged-chr11-87434756-2	chr11	87434256	87435256	+	579.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	RMER17C|LTR|ERVK	7165.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	4.37442066987538	4.09542161358284	4.50938387990011	4.93974925743922	4.68314790959039	4.9843438860196	1.31641195801069	0.00297298894250606	0.0418289590679818
Merged-chr16-90196606-2	chr16	90196106	90197106	+	623.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24136.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	3.89330550721097	3.77175833577073	4.06883079932667	3.87161653557144	3.56846434814251	4.09195523861098	-0.186432214267833	0.735208476572255	0.932617455907478
Merged-chr8-34149346-2	chr8	34148846	34149846	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2607.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	5.3353367784048	5.73875142272483	5.64552828762395	5.82951587515489	6.13363605160704	5.86351949838431	0.673383509895367	0.0426247864759438	0.258891842517983
Merged-chr2-163712852-5	chr2	163712350	163713350	+	879.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	18813.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	5.34257632304955	5.72316685629683	5.65771114793116	5.31401151766637	5.45391916670848	5.31611514167007	-0.411898979610037	0.233874082271869	0.630121355137759
Merged-chr19-3769913-2	chr19	3769413	3770413	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167889, intron 2 of 10)	intron (NM_001167889, intron 2 of 10)	2492.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	4.55734768521005	4.57403741286868	4.86021513755022	4.53081718890306	4.60918722389531	4.54506349586103	-0.231763293664123	0.581625387005107	0.873381838073181
Merged-chr17-78937141-4	chr17	78936684	78937684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	49.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	6.95396913155664	7.58331086256574	6.9534785354456	7.07453555609	7.44429096144973	6.82881237047446	-0.0855006303811399	0.787083933154599	0.948693859994902
Merged-chr19-6118520-4	chr19	6118016	6119016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133678)	promoter-TSS (NM_133678)	70.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	7.11235483021161	7.36903392585049	7.30190925950348	7.06087367597647	6.99071564909597	6.90245008164627	-0.416079044524683	0.087364736315385	0.391922236990443
Merged-chr10-60285122-3	chr10	60284627	60285627	+	915.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	666.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.27338059117305	7.5649416424104	7.56861228663896	7.87360254866366	8.00021183439067	7.39574125484059	0.458649230044639	0.0848168472230453	0.385694623660245
Merged-chr11-101550950-2	chr11	101550450	101551450	+	758.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009764, intron 1 of 22)	B1_Mur1|SINE|Alu	1005.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	3.9502776989632	3.57976134911483	3.66990592726117	3.80455130124154	3.69976076857423	3.68682562908013	-0.0502752432140512	0.927519337915282	0.983584626679457
Merged-chr3-75298081-3	chr3	75297593	75298593	+	862.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28015.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	6.0619380791613	5.75187803991137	5.39598095289167	5.92799480965219	6.08440429321778	5.65036714308874	0.232779339118513	0.514100578992193	0.842928757124913
Merged-chr1-34850956-6	chr1	34850431	34851431	+	970.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	942.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	7.33578779467796	7.47061349831549	7.47381559948753	7.76919598894067	7.70799212246685	7.62831529872179	0.405789042640656	0.0676956304386336	0.340372108135708
Merged-chr3-30969353-4	chr3	30968838	30969838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	77.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	7.40651724220195	7.46544491984412	7.29481649714922	7.56800373059428	7.30874120494856	7.07574184840609	-0.0807860445915291	0.748801536726131	0.937087780077821
Merged-chr1-179834238-4	chr1	179833737	179834737	+	965.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30222.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	3.86400862241239	3.59439378736531	3.2771749580049	3.64710678761495	3.67370835394402	3.593388066454	0.106051655205529	0.862951395068007	0.968145666951861
Merged-chr19-10740900-3	chr19	10740398	10741398	+	944.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027805)	promoter-TSS (NR_027805)	-49.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	3.57124187877093	3.2064427468059	3.32008595688058	3.38207828444807	3.3962825642657	3.21348036778232	-0.156932736689924	0.803068197931165	0.953422605427866
Merged-chr10-125331552-4	chr10	125331053	125332053	+	926.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2590.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.14692058157262	6.33197459339617	5.94550750639342	5.89939121489864	6.04105117047324	6.00696756632227	-0.30215154040541	0.313229887270724	0.707836272539716
Merged-chr4-135314637-4	chr4	135314161	135315161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38553.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	8.77053967955561	8.68085423713151	8.258429860753	8.29140408341163	8.7540219398467	8.2272932657057	-0.194238877809478	0.460764087827561	0.814723494835218
Merged-chr7-127848727-2	chr7	127848181	127849181	+	869.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009294, intron 10 of 10)	intron (NM_009294, intron 10 of 10)	6873.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	5.57246220781704	5.13215183074705	5.61875165515001	5.3830138734827	5.27748539401619	5.65474641732458	-0.0276623241130871	0.940199116406851	0.986792088790777
Merged-chr8-70762032-3	chr8	70761542	70762542	+	883.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_023065)	TTS (NM_023065)	-1121.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	5.8032501986467	5.58204212993803	5.86451695565677	5.92473132508817	6.05108261923892	5.80130021763857	0.337698065555487	0.278437607872871	0.675623815920472
Merged-chr4-109124809-3	chr4	109124312	109125312	+	820.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	MTE2a|LTR|ERVL-MaLR	-6776.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.81490648973597	4.01935205588098	3.82553180486155	3.96635194862668	3.81025402591847	3.79057023837547	-0.111140116617672	0.830379136376322	0.960291707438312
Merged-chr5-100655692-1	chr5	100655192	100656192	+	777.0	f1_c57bl6.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	18564.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	3.58153902578861	3.41003648706251	3.62726688782286	3.84469941331838	3.4649190379646	3.69772506569818	0.472408869193842	0.412606365464864	0.784551818322662
Merged-chr11-103402376-3	chr11	103401883	103402883	+	828.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	10281.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	6.39055533589212	6.41203158814083	6.43120484132261	6.79939788595126	6.77812822368432	6.20276037954008	0.35995876406924	0.2242110386056	0.619024225240386
Merged-chr12-40719133-3	chr12	40718648	40719648	+	652.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 16 of 52)	Lx6|LINE|L1	273095.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.69114401191261	2.8082234704639	2.88873883104031	2.88924876497662	2.85033799358053	2.77749878462248	0.2358062286752	0.741064075958411	0.934742147011145
Merged-chr11-106106369-4	chr11	106105856	106106856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	21454.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	5.42841718103031	5.16800454380565	5.69147802443151	5.41803835191893	5.17536716209328	5.46415273062614	-0.165688517709918	0.651276448905102	0.902765246794264
Merged-chr16-23311195-4	chr16	23310690	23311690	+	703.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	L1Md_F2|LINE|L1	20720.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.87780655491254	3.56282430451846	3.83617492435509	3.85096207338127	3.56119662284464	3.80590261732427	-0.0776732750915409	0.888709939889126	0.974150661023507
Merged-chr13-62964801-4	chr13	62964277	62965277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289924)	promoter-TSS (NM_001289924)	-116.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.08776411046124	6.25925261770991	5.78786925043164	5.90969808437709	6.28700937454406	5.9519093510373	0.00182719781166196	0.9954925521076	0.998961028701257
Merged-chr11-37079645-4	chr11	37079156	37080156	+	895.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135415.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	2.66257461835525	2.68292915513092	2.89876822124387	2.70378206848009	2.54738697437222	2.67329028930076	-0.593849183376416	0.431416544316213	0.796881045962937
Merged-chr10-16989773-3	chr10	16989272	16990272	+	799.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038020, intron 2 of 8)	intron (NR_038020, intron 2 of 8)	106010.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.62892090722809	2.65780556314565	2.56729433420431	2.78309215180452	2.9592798085732	2.83511939263476	1.3050343595829	0.082874265553321	1
Merged-chr14-79535518-4	chr14	79535029	79536029	+	940.5125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	19855.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.38169603937327	6.46191483004777	6.23338202354068	6.43712430142269	6.69732878797049	6.52570780504157	0.313784653261163	0.252352553254758	0.649830747012104
Merged-chr13-37680512-4	chr13	37680026	37681026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-145512.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.36993653143958	5.09839461733353	5.17685327384106	5.23632021241141	5.27410716206459	5.45489947786722	0.194548368569876	0.583732888648426	0.874225271981634
Merged-chr3-96269628-4	chr3	96269142	96270142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	-58.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	7.23856077620812	7.54944443120475	7.38431085938511	7.59200817226865	7.90929901058009	7.43059953228587	0.394037337706987	0.124113102459724	0.471452334100897
Merged-chr11-119615399-2	chr11	119614924	119615924	+	779.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028898, intron 1 of 33)	intron (NM_028898, intron 1 of 33)	12519.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	3.49695590265126	3.40541762521318	3.2783460664969	3.54696849275752	2.98137273198541	3.51968210005636	-0.092587573627482	0.891146606540893	0.974773916701158
Merged-chr5-122951749-4	chr5	122951205	122952205	+	923.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37394.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	3.76100547427365	3.54974484045637	3.43674284625236	3.84017030443402	3.62446556847088	3.67771247975658	0.414273558250159	0.467043454803445	0.817749374019291
Merged-chr5-114784784-4	chr5	114784299	114785299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	9659.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	4.97068891778545	4.53463279842074	4.80292153519258	4.94707509362956	4.88049565801784	4.7105911618633	0.164835275980731	0.689923293749518	0.917545271014766
Merged-chr14-54578387-4	chr14	54577896	54578896	+	955.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010590)	promoter-TSS (NM_010590)	-735.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	4.58667175333684	4.40446190382411	4.95487539757827	5.10002331231826	5.4422361083107	5.5286628342563	1.54226798847803	0.000192443580095023	0.00485384826085076
Merged-chr6-146641833-4	chr6	146641215	146642215	+	690.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-864.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	5.15662422964595	5.59205915869	5.35518598639074	5.17203653472474	5.41525148723902	5.47724932094113	-0.0481795455673543	0.894475273556512	0.975548196585404
Merged-chr8-106611331-4	chr8	106610782	106611782	+	874.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	7932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	3.78053889019026	4.15842911537759	3.99150913932327	3.70013351967193	3.74766979109396	4.01273175170636	-0.529699526802118	0.322860914072175	0.716236827826531
Merged-chr15-100462742-2	chr15	100462242	100463242	+	911.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6269.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	4.90849682103028	4.44683113523034	4.24182756364556	5.07388456623786	5.20890390195848	4.93938660599213	1.13056415161224	0.0137092456858329	0.125051404848364
Merged-chr9-21165763-2	chr9	21165263	21166263	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	49.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	6.84150025142893	6.90649743736019	6.66844882297152	6.98312942025632	7.03759943795773	6.8082708719974	0.210922045215795	0.405366829521298	0.780134157220244
Merged-chr3-40846823-4	chr3	40846318	40847318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038067)	promoter-TSS (NR_038067)	36.0	NM_028140	72175.0	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding	5.1965974435648	5.50042691971516	5.52553743849012	5.87890135361663	5.54097564592738	5.4714797157298	0.44281191079281	0.206675520116745	0.597309359759271
Merged-chr4-109657445-6	chr4	109656969	109657969	+	985.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7903.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	3.64142862765509	3.64752955394743	3.66318644194362	3.64248380195187	3.58622098063835	3.7328597399576	0.000645666735490199	0.999050618524788	0.999864283693757
Merged-chr5-92491014-4	chr5	92490527	92491527	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	14630.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	5.74034773013709	5.81612467330905	5.71853835947972	5.82190125775805	5.68057435617086	5.67306844607063	-0.0625148599566021	0.839067670098611	0.962691988776977
Merged-chr12-59012776-6	chr12	59012319	59013319	+	816.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-572.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	7.0602758765202	7.46858322143161	7.27567199850621	7.36137429749774	7.82354467026917	7.59345485807174	0.485021476155517	0.0658520571678976	0.334886809242539
Merged-chr15-103454523-2	chr15	103454023	103455023	+	764.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 1 of 30)	intron (NM_153505, intron 1 of 30)	698.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	6.38599134447406	6.68080373384409	6.77163641481179	6.62574429045173	6.84919450417736	6.85904603573758	0.259677105501719	0.340917452956327	0.730599337545402
Merged-chr19-55571577-2	chr19	55571077	55572077	+	977.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	Tigger5b|DNA|TcMar-Tigger	130627.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.12599460611188	3.78737366258941	3.74398592177122	3.42579853689728	3.71832942289004	3.76215190459987	-0.842380230837571	0.141365372218567	0.502119843364898
Merged-chr1-85897754-4	chr1	85897187	85898187	+	776.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	3177.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	4.5429028915624	4.15810909851564	4.37752591922636	4.53561605925033	4.25345818732125	4.48752629538533	0.144834665322384	0.754090068362963	0.938697959552771
Merged-chr9-108578076-2	chr9	108577576	108578576	+	592.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028944)	TTS (NM_028944)	594.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	3.13290704518645	3.35179748004923	3.49885130380813	3.27235286797465	3.2770918440302	3.66700460385435	0.30605203498429	0.631033533576768	0.894985993418144
Merged-chr19-29418076-4	chr19	29417577	29418577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7158.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	6.25421746778106	5.59667321500891	5.70325460715846	5.97389565363853	5.79523728799748	5.59395591216022	-0.162794225862111	0.650927565496794	0.902735752871093
Merged-chr1-118387719-2	chr1	118387219	118388219	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-1339.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	5.72538928332163	5.76025103974122	5.7136982097101	5.6771440559567	6.06056783645464	5.77585699436751	0.224490245574095	0.480427200888891	0.824543506620807
Merged-chr10-123197025-4	chr10	123196558	123197558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027604)	promoter-TSS (NM_027604)	-39.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	7.0735153467707	7.13577729715277	7.38770277409593	7.26023459444826	7.08652591052441	7.03463105551629	-0.09980345333762	0.687974619488561	0.917193226920892
Merged-chr16-57571325-4	chr16	57570815	57571815	+	897.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	22073.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.98962862501317	6.6155742350665	6.53456432450008	6.63167860306547	6.85043114291196	6.64649350608416	-0.0279372217029086	0.9207044669047	0.982463724790289
Merged-chr4-34510574-4	chr4	34510073	34511073	+	915.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-40042.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	2.56555299624665	2.72442968100015	2.67580708774957	2.66984815269454	2.64072781591335	2.9853021341804	0.590693249343796	0.436919252617694	0.79970034033156
Merged-chr9-111562321-2	chr9	111561839	111562839	+	830.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001324546, exon 10 of 10)	3' UTR (NM_001324546, exon 10 of 10)	123258.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	4.51853061753653	4.370942136187	4.76289774792569	4.37835710581715	4.46541638561698	4.56429998463057	-0.20387195077135	0.64237349257088	0.899398873915991
Merged-chr2-92459329-4	chr2	92458811	92459811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_211358, exon 1 of 2)	5' UTR (NM_211358, exon 1 of 2)	483.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	7.66426074820775	8.18768839265248	7.74545752501338	7.75181968188776	7.8924218670459	7.69422122972726	-0.153961003567122	0.543252602265578	0.857545957833401
Merged-chr14-21750569-4	chr14	21750063	21751063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	32.0	NM_001359954	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	7.78728362063912	7.95565026905811	7.70493629689248	7.63870368959102	7.90620568297832	8.00226736253572	0.0461859893183626	0.843648766992723	0.963587687251108
Merged-chr1-80723422-3	chr1	80722914	80723914	+	725.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35139.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	3.36058517198495	3.59524483520877	3.39973347041119	3.45810533334501	3.3614253056363	3.52604042151108	-0.0532359423514057	0.928153060641878	0.983802612059568
Merged-chr10-26176374-2	chr10	26175874	26176874	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53333.0	NM_001013766	268288.0	Mm.213322	NM_001013766	ENSMUSG00000051354	Samd3	Gm623	sterile alpha motif domain containing 3	protein-coding	2.53767712171776	2.61078107044057	2.67746007129492	2.39741957006993	2.33077575024513	2.4368349631141	-1.41197956718959	0.0848653118748543	1
Merged-chr5-72802739-2	chr5	72802239	72803239	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-49962.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	4.5057609083175	4.31123837874436	4.38821279150537	3.98772600268435	3.88397816782613	3.88400309095341	-1.39012753835033	0.00412238427920083	0.053111955753694
Merged-chr6-86586192-4	chr6	86585753	86586753	+	810.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41921.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	6.3199153222014	6.07912885234077	5.712856836402	6.32959242482383	6.07923578763699	5.91246589994788	0.0841322955880903	0.799563748288663	0.952263864378888
Merged-chr17-78366282-4	chr17	78365800	78366800	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	51852.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.75648909602845	4.50719006254406	4.72210305058915	4.40478244168499	4.19239209586292	4.75048980374457	-0.513001626524026	0.261043176859107	0.658567723609624
Merged-chr19-7485335-4	chr19	7484804	7485804	+	904.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2013.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	4.19826888182729	4.11115185667924	4.22518879411813	3.7919493293361	3.63443875322046	3.92265397549127	-1.2333054380178	0.0160339713329181	0.13906734278929
Merged-chr5-32135090-4	chr5	32134598	32135598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1374.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.85694035932409	7.8168475069975	7.60938895817999	7.60838579688649	7.62430939946609	7.55900114526398	-0.248523286946628	0.264130098049006	0.661984744638823
Merged-chr17-34898434-5	chr17	34897921	34898921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286573)	promoter-TSS (NM_001286573)	-71.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	6.14979863518508	5.9289384466909	6.30523988815786	6.44803797540641	6.207843482587	6.18440012671064	0.266977624513242	0.36777362285054	0.752809535304988
Merged-chr4-43562489-4	chr4	43561977	43562977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013497)	promoter-TSS (NM_013497)	106.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	7.38878838500817	7.41006889116831	7.41224940979222	7.46576804523672	7.57609224813215	7.58864730121214	0.206878488564272	0.350862474628845	0.738815453164556
Merged-chr2-165855112-2	chr2	165854612	165855612	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3061.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.73885072994474	5.49564871768792	5.62607810943372	5.56636379466998	5.63834414896392	5.91070177457184	0.149262249141665	0.648939716280086	0.902009186178998
Merged-chr2-75696645-4	chr2	75696142	75697142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	8021.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.82704673968205	5.9396420652135	6.08514589073828	5.74291950704214	5.92006829841997	6.33763034424837	0.112727675492735	0.730483911951828	0.930884711548651
Merged-chr17-46704498-2	chr17	46703998	46704998	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357684, intron 1 of 14)	intron (NM_001357684, intron 1 of 14)	504.0	NM_009358	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	5.37346367743587	5.4967810525506	5.71661598006352	5.40929138104279	5.56592656199909	5.6510387746707	0.0308238828315391	0.926841724622534	0.983578869536024
Merged-chr15-80798539-4	chr15	80798054	80799054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-56.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	6.70255979190093	7.07898017868035	6.82239008379634	7.09165227412302	7.82580129650343	6.64453485119642	0.625785834976112	0.0785841589830951	0.370262214080712
Merged-chr5-138155804-4	chr5	138155303	138156303	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019747)	promoter-TSS (NM_019747)	-59.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	5.04673929960231	4.76032985940201	5.16507379260395	5.11303636793214	4.9386341145234	5.40471567739347	0.339740985821526	0.392463972288126	0.771172125304963
Merged-chr14-31830000-2	chr14	31829500	31830500	+	703.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024604, intron 1 of 27)	CpG	415.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	3.5108701669463	3.58385131650605	3.35510202195473	3.35031094325236	3.45911404545552	3.53788805603507	-0.161445689816728	0.783659296493314	0.947273157369161
Merged-chr5-122662712-4	chr5	122662203	122663203	+	982.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038845, intron 5 of 12)	Lx8|LINE|L1	12279.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.25222011177347	3.94716242974555	4.43941897110553	4.60554418763035	4.7745530813829	4.50694647315993	1.08300440896047	0.0202783963605459	0.162947832387089
Merged-chr5-52191344-2	chr5	52190844	52191844	+	806.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	663.0	NR_015537	414108.0	Mm.383512	NR_015537	ENSMUSG00000097145	9230114K14Rik	-	RIKEN cDNA 9230114K14 gene	ncRNA	3.41172608312495	3.38161635346729	3.53336001628415	3.48109071396648	3.4269134402937	3.65362516287009	0.292243981683238	0.613884025884517	0.887317203673931
Merged-chr13-62129960-4	chr13	62129488	62130488	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039239)	promoter-TSS (NM_001039239)	98.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	3.56090464759345	3.82516515147018	4.07466810580159	3.9788765691896	3.87631000062184	4.00580061989738	0.383826997358268	0.47697673923876	0.82305988476216
Merged-chr10-117835551-2	chr10	117835051	117836051	+	561.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	B4A|SINE|B4	10423.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.23525443951595	5.26968940005552	5.46789106137167	5.52675712074426	5.55989871386509	5.71655428155845	0.537866864180833	0.107119829856226	0.436794413538999
Merged-chr11-72782728-4	chr11	72782227	72783227	+	742.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001024926, exon 3 of 4)	exon (NM_001024926, exon 3 of 4)	13112.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	4.13696057116043	4.07878156921637	4.38020508361919	4.1531599636892	4.05829192887993	4.09480892274152	-0.267230482978714	0.576357764230309	0.871585692229598
Merged-chr1-171504782-2	chr1	171504267	171505267	+	614.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019484)	TTS (NM_019484)	1289.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	5.57861186730391	5.62687633854254	5.54335655391452	5.81086596554948	6.03680324244338	6.11904438088189	0.730721421528083	0.0189261064734018	0.155705306252602
Merged-chr8-122428822-2	chr8	122428322	122429322	+	866.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	ID_B1|SINE|B4	4118.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	5.72387394909793	5.691235041675	5.83961286980676	5.98078548964618	5.92962876856467	5.85174289396471	0.316828854102449	0.291639320677188	0.689180216265016
Merged-chr11-31870762-4	chr11	31870162	31871162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290676)	promoter-TSS (NM_001290676)	-278.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	7.58876882236813	7.79503929520902	7.35203251533094	7.55968032729334	7.53112871233596	7.09547268607113	-0.258560966172146	0.33122215831475	0.722596533854639
Merged-chr12-35534367-4	chr12	35533853	35534853	+	933.88092	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	636.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	5.63861344838731	5.65546647715705	5.39995557687105	5.10582193057436	4.928226089019	4.94668975784493	-1.17229756915102	0.00093874028131556	0.0171370560174869
Merged-chr9-65551636-2	chr9	65551136	65552136	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_153119)	TTS (NM_153119)	28451.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.88518138325821	7.95225862966632	7.80308511626762	7.54114752958148	7.73613561129354	7.23782257861275	-0.505951332564276	0.0392110373859918	0.245654070206352
Merged-chr9-22308954-4	chr9	22308449	22309449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1311.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	5.7540604951337	5.68881452809714	5.47746676346898	6.11986410064806	6.3912687593301	6.02934220884948	0.952800156955744	0.00251733758529223	0.036929235859837
Merged-chr1-43457136-3	chr1	43456644	43457644	+	873.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	11393.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.37186367665883	3.17578032760594	3.19941619705606	3.38106852305274	3.35402570681926	3.59650590122506	0.746332810133842	0.226859293324865	0.621858279656575
Merged-chr13-55320658-1	chr13	55320158	55321158	+	546.0	f1_balb.idr	intron (NM_009000, intron 5 of 7)	intron (NM_009000, intron 5 of 7)	1322.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	2.61519485709897	2.94170747351303	3.25706943899908	3.03152618312526	3.00878865912166	3.10992962796633	0.393982312492148	0.607160452210599	0.884448083779426
Merged-chr14-51091073-2	chr14	51090573	51091573	+	945.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-4.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	6.01956799219748	6.45117372960915	5.80179555619268	5.77579628629414	5.87949914483099	5.88993820905367	-0.492719331901726	0.136448531997504	0.493487407315159
Merged-chr12-84001218-2	chr12	84000716	84001716	+	886.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8286.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	3.34870094374602	3.31143419211163	3.11853519966006	3.1826045636281	3.19285130518513	3.30800435027026	-0.178675770289817	0.7766031017298	0.944890351789015
Merged-chr16-57538219-3	chr16	57537722	57538722	+	768.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-11020.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.46398363790678	4.56440279341653	4.41470244298242	4.19657567298512	4.02254349840759	4.26075510100418	-0.890361515514004	0.0507891901120402	0.287018943958343
Merged-chr7-102687280-4	chr7	102686766	102687766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001307998)	promoter-TSS (NM_001307998)	61.0	NM_198012	101700.0	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding	4.48772118136276	5.03250316239083	5.03679683491434	4.79884018681612	4.7613407047738	4.66037049472948	-0.293206951184966	0.495883709072591	0.832791580844309
Merged-chr10-70245147-4	chr10	70244684	70245684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025807)	promoter-TSS (NM_025807)	-92.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	6.11293380700682	6.35714685195807	6.40532840649109	6.34989221809664	6.49955376836499	6.39074410231669	0.206274941267676	0.459327356015655	0.813583469343522
Merged-chr8-24421523-2	chr8	24421023	24422023	+	732.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17423.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.63645211275738	5.43800080773367	5.35122224522498	5.48592349274634	5.92710067280917	5.35003549699322	0.267803819287825	0.461812250092335	0.815107818354545
Merged-chr9-48817503-4	chr9	48817004	48818004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	18441.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	5.5444381091586	5.41526240139184	5.24526951401005	5.49834034098161	5.31426956881017	4.97981013788933	-0.240487591312437	0.515084090735639	0.84337265078831
Merged-chr12-109509153-4	chr12	109508675	109509675	+	887.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31821.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	3.79830781099755	3.96551038822499	4.14159487958413	4.52973629932584	4.32004956850867	3.90578957687393	0.884210474209216	0.0910330439555925	0.401574986117974
Merged-chr5-33021914-2	chr5	33021414	33022414	+	662.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011738, intron 1 of 1)	ID4|SINE|ID	3098.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	3.42349788466575	3.41121674284601	3.40133489795295	3.48047567020516	3.26719352794011	3.30094139441533	-0.234158840268473	0.695380836958127	0.919289041383579
Merged-chr7-44962849-4	chr7	44962331	44963331	+	831.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001252470, exon 13 of 19)	exon (NM_001252470, exon 13 of 19)	12020.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	2.86205861281017	2.57785423146656	2.83411811856407	2.80702012843052	2.66692453796455	3.18876474634889	0.679125106338413	0.379152855598506	0.761674249055766
Merged-chr5-145115907-2	chr5	145115407	145116407	+	929.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	BC1_Mm|scRNA|scRNA	1651.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	6.93834584212293	6.94301858690728	7.12226338198793	7.31979174469898	7.5248420723093	7.35430806325263	0.61313228692079	0.0101715510226012	0.101583009266027
Merged-chr7-136327285-4	chr7	136326817	136327817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22098.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.60692491562198	4.4964403734449	4.61930019317978	4.84278636287305	4.67144642595279	4.97973106705258	0.598730718237417	0.143722639076605	0.506028730682277
Merged-chr7-4527340-2	chr7	4526840	4527840	+	673.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033548, intron 6 of 11)	intron (NM_001033548, intron 6 of 11)	-4812.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	5.48037148344053	5.82638698487322	5.71973067785492	5.91203041606744	5.94014586302964	5.58707391143712	0.269952591958213	0.413118276639772	0.784770288990094
Merged-chr11-59536896-2	chr11	59536396	59537396	+	907.0833130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4673.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	3.02554208216616	2.82505607757639	3.03765259391566	3.03269328803701	3.0105124127899	3.05114571178692	0.312636048675862	0.643351233404472	0.899757453091288
Merged-chr15-11993260-2	chr15	11992760	11993760	+	566.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011294, intron 2 of 4)	intron (NM_011294, intron 2 of 4)	2747.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	2.59128547130437	2.33337431813847	2.51448472133915	2.12836040852221	2.29124166497722	2.39845797165469	-1.38271424522387	0.124781030888884	1
Merged-chr10-44527740-3	chr10	44527245	44528245	+	824.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68997.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.48104664556233	6.72906009232472	6.1794706442198	6.51294035813332	6.72611774325359	6.59348568498412	0.19358831621639	0.506690793225416	0.838542828803423
Merged-chr9-70258106-2	chr9	70257606	70258606	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	MER90a|LTR|ERV1	50756.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	6.78828884400605	7.19088473435272	6.3051720083259	5.8552921774334	6.11492251482063	5.77629097940775	-1.45218084658093	2.50340177076426e-05	0.000885210260131608
Merged-chr8-85084615-5	chr8	85084008	85085008	+	956.14447	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010764, intron 2 of 23)	intron (NM_010764, intron 2 of 23)	1239.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	6.69850491271148	6.42871867541236	6.38358100069131	6.92926655702078	6.99848608355651	6.51898103148374	0.518965920611238	0.0708624609151463	0.349122129659986
Merged-chr10-40525955-4	chr10	40525437	40526437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44425.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	4.96476042449963	4.54577036752838	4.87419402931941	4.73794317873355	4.60788525072536	4.40668574394321	-0.485408672150013	0.263134645725018	0.661098088755315
Merged-chr5-148489494-4	chr5	148489000	148490000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	62173.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.90998847474011	7.12791084075845	6.71247802401564	6.44184424995645	7.01973020322819	6.70603730290843	-0.279848745600726	0.343688974756039	0.73255987016498
Merged-chr17-27615571-4	chr17	27615061	27616061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019837, intron 1 of 4)	L2|LINE|L2	7403.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	5.99827498996061	5.62471104054677	5.5330402746846	5.86505593640539	5.76292976410904	5.44025958558877	-0.0597567338396823	0.86356430193583	0.968269312109804
Merged-chr9-47647746-3	chr9	47647246	47648246	+	933.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	117394.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.2658649315027	4.04270405066009	4.25869331353394	3.94454090438005	4.14212491539293	3.89473236401077	-0.523437333091227	0.292946399108167	0.690053425164737
Merged-chr19-46516503-2	chr19	46516003	46517003	+	954.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_053100)	TTS (NM_053100)	14855.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.81085193750928	5.09597381797586	4.91500554056831	4.70888613283904	4.760426235999	4.94412697165747	-0.329422206847886	0.403029617928029	0.778460234651581
Merged-chr9-104239287-4	chr9	104238788	104239788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	23642.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.98186647065338	6.13534030807401	6.15737215443686	6.3915010903686	6.60288633702462	6.41644025549204	0.645831750569252	0.0205911731390433	0.164523750197188
Merged-chr6-115485876-3	chr6	115485349	115486349	+	735.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	-58855.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.57338463748543	3.65129499923372	3.56453232066503	3.52298097019763	3.50325740917434	3.73743087036635	-0.0490671183947825	0.93024937671964	0.984485771257693
Merged-chr17-48185436-4	chr17	48184935	48185935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-18178.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	5.08191871338365	5.09040031241413	4.74555065860463	4.93415967120174	4.63081459701059	4.96531944174618	-0.329699833274283	0.414723672452005	0.786019635735451
Merged-chr8-35679674-2	chr8	35679174	35680174	+	677.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081279)	TTS (NM_001081279)	-90654.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.49445218042642	4.34444850528265	4.95140314730702	4.0967538591119	4.01413965211592	4.49379456492215	-1.04568013133469	0.0372801371786794	0.238285885263755
Merged-chr10-6418358-3	chr10	6417846	6418846	+	702.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-340247.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	3.14486617560249	2.76297022856147	3.16886841732956	2.55190769471772	2.41992862228841	2.50796852929843	-3.55917095801924	0.000272767792762007	0.00643592149273011
Merged-chr13-55017588-2	chr13	55017057	55018057	+	984.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	3262.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	5.37099498571213	5.29023312933068	5.40825972658532	6.34937467811389	6.21958037018824	6.03577812388756	1.54960261560366	6.53065095749643e-07	3.70923143256903e-05
Merged-chr7-4950785-1	chr7	4950285	4951285	+	1000.0	f0_balb.idr	Intergenic	Intergenic	13563.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	3.75932804948594	3.80358834320359	3.76843120850951	2.87314524741022	2.7398564026563	3.05069007273631	-6.01402605310012	6.38868031785647e-07	3.64288095652611e-05
Merged-chr15-81851641-2	chr15	81851054	81852054	+	765.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_020507, exon 2 of 2)	exon (NM_020507, exon 2 of 2)	6772.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	2.67464920504007	2.56636030511371	2.91768071018118	2.6213231623947	2.61276235558657	2.87536266895873	-0.0967741133277754	0.899396313971165	0.97662115673637
Merged-chr19-5072741-2	chr19	5072220	5073220	+	769.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	4642.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	4.11528705549883	4.01477314500298	3.75482648625027	4.41179901612478	4.29874402550871	3.88674920031198	0.699292631580968	0.189225386527566	0.574868493270401
Merged-chr13-55511100-2	chr13	55510600	55511600	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114088, intron 2 of 12)	intron (NM_001114088, intron 2 of 12)	2346.0	NM_026131	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	3.22117002856507	3.1623758195086	2.87754165419159	3.19807567552628	3.04672301014562	3.14134240536666	0.115589730897016	0.86538460403799	0.968641478520565
Merged-chr2-118388478-4	chr2	118387963	118388963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177806)	promoter-TSS (NM_001177806)	-154.0	NM_001355383	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	7.1116839072468	7.29578098342651	6.78089997130279	7.32865919585108	7.41343659899785	7.07752838670075	0.294039241581003	0.275352458727929	0.672878924694082
Merged-chr1-131555320-4	chr1	131554823	131555823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27420.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	4.79109758831527	4.33211667954801	4.21816814222953	4.70642108339486	4.83242666865688	4.18458884144245	0.320161413996293	0.530246596322033	0.851070276054813
Merged-chr6-116207182-2	chr6	116206682	116207682	+	836.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	811.0	NR_131013	78739.0	Mm.417032	NR_131013	ENSMUSG00000108030	9530062K07Rik	-	RIKEN cDNA 9530062K07 gene	ncRNA	6.73267338291782	6.91720452077745	6.43907912053972	6.38897769268541	7.02181450231471	6.17876075493221	-0.185692925717054	0.58854160115734	0.876539217617999
Merged-chr17-83278545-4	chr17	83278192	83279192	+	804.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63409.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	5.37215739076809	5.39624277858318	5.36991636133925	5.9045348099884	5.83076680952342	5.91922287742462	0.931130249669395	0.00303872931152143	0.0425023682220667
Merged-chr7-90144319-1	chr7	90143819	90144819	+	738.0	f1_balb.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	14106.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	4.88252901245708	4.95958291474863	4.82733787302079	5.09897290451638	5.38851203810558	5.11543244798599	0.681181051101488	0.0692818129316064	0.344435917102623
Merged-chr2-51090795-4	chr2	51090316	51091316	+	711.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	58295.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	4.35508038770418	4.41708454430956	4.06316010744064	4.30797865807042	4.10986618658172	3.97597190322485	-0.420524483762627	0.390350140904468	0.769585097056154
Merged-chr10-24164736-4	chr10	24164258	24165258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	15441.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	7.70922063966509	7.42219611368374	7.46477392635021	7.5982211369416	7.68275921520808	7.34683739298016	0.0245259251557091	0.919680654323709	0.982077636922415
Merged-chr4-32658134-2	chr4	32657634	32658634	+	951.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081392, intron 1 of 101)	URR1B|DNA|hAT-Charlie	1015.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	3.43149052465221	3.42730695900832	3.26406081345629	3.74119751035026	3.7268517592338	3.46008967700881	0.990515964511252	0.0959225145950002	0.412929825361932
Merged-chr8-106007342-3	chr8	106006843	106007843	+	732.127747	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-4135.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	2.64599904355183	2.54070638309627	2.69240519789609	2.46324249627428	2.3770705104781	2.38245310906216	-1.35550487324065	0.0968477846725868	1
Merged-chr11-87449609-2	chr11	87449109	87450109	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	B2_Mm1t|SINE|B2	22018.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.74098639454744	5.75857472569149	5.64120039421835	5.59898088821318	5.85533346216852	5.56129485208666	-0.0514244043596797	0.872609007682898	0.970261003150518
Merged-chr12-86885615-2	chr12	86885115	86886115	+	676.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	-801.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	3.95401166726906	3.75665636025113	3.76008638529648	4.34429483289735	4.05944998307111	4.18453243704506	1.09225551325122	0.0320575176147923	0.217377713771627
Merged-chr11-69992747-2	chr11	69992247	69993247	+	820.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019749, intron 3 of 3)	intron (NM_019749, intron 3 of 3)	1377.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	5.43391910902723	5.44967075080395	5.79220920986296	5.76003915154862	5.69543789735002	5.70348219128478	0.304348632426233	0.351323622061397	0.739233270938645
Merged-chr4-122840425-3	chr4	122839931	122840931	+	878.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008917, intron 1 of 8)	L1MB5|LINE|L1	4204.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	4.89002596135803	4.79985714468748	4.53228302647372	4.57046024433424	4.27583387538442	4.72201353289616	-0.559436041714882	0.204793522872295	0.595480247510696
Merged-chr10-19559941-4	chr10	19559448	19560448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32001.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.15010260810518	6.27525337223283	6.21813729300541	6.16001254564591	6.45833573381001	6.10579631730422	0.0795228689984981	0.784406398614442	0.947576747080331
Merged-chr5-142814974-2	chr5	142814474	142815474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	2413.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	4.92019123250805	5.04947964711917	5.30186840740062	5.06628901247341	5.01273268328969	5.87722130491024	0.558844632636475	0.201208056728109	0.590759350184633
Merged-chr2-27351095-2	chr2	27350595	27351595	+	739.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	RMER19B|LTR|ERVK	76513.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.36729367353642	6.34826679250446	6.43300952643975	6.13065601519761	6.12898196791207	6.34573948717	-0.304306732867603	0.270160716753247	0.667167238072184
Merged-chr8-56301968-4	chr8	56301465	56302465	+	709.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	7413.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.21200543515604	6.16395595557071	6.22768350242521	6.0846710767898	6.371813649589	6.43907633904896	0.17644648052405	0.536267725379213	0.85392789486322
Merged-chr10-96164570-2	chr10	96164070	96165070	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-61637.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.31553513292819	4.94287205703924	5.14993995848785	5.21027175787657	5.47589242015569	6.00901270717833	0.884676481464766	0.0282156281907109	0.200921351347255
Merged-chr15-4734291-4	chr15	4733780	4734780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016704, intron 3 of 15)	intron (NM_016704, intron 3 of 15)	7070.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	5.64289165823233	5.59414251364131	5.7771198834496	5.94556700470115	5.60753885544374	5.97802301039221	0.322081648584497	0.31964946278121	0.713586133471515
Merged-chr2-167378350-2	chr2	167377850	167378850	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29172.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.45090425287326	6.19511653130487	6.22466484327488	6.07298717625778	5.96626569569761	5.9995319846025	-0.484853884953953	0.0919897826816885	0.404026700310263
Merged-chr11-118158369-2	chr11	118157869	118158869	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29150.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.61666201473728	4.65828633877906	4.83158830647514	4.15364461121611	4.44256698715833	4.99422127194073	-0.315266766338134	0.515435903362409	0.843675244921588
Merged-chr17-35836385-4	chr17	35835880	35836880	+	959.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011655, intron 2 of 3)	intron (NM_011655, intron 2 of 3)	1921.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	4.74999056677123	4.53352773171984	4.5563622222027	4.52441062987741	4.33375411227082	4.91891326672374	-0.0415317853399764	0.92668412364262	0.983552081840569
Merged-chr4-147938917-3	chr4	147938422	147939422	+	944.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1973.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	5.51076555304604	5.8011849148947	5.78729332604857	5.87004080105427	6.09605624111924	6.24218822028964	0.654861687636407	0.0390993776617766	0.245171594457532
Merged-chr3-90323437-4	chr3	90322951	90323951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18203.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	6.66045719849838	6.73717088601684	6.22186731777744	6.22704974076554	6.63429806204742	6.09948482292138	-0.344669767615446	0.28204512852157	0.679908771156903
Merged-chr1-171001974-2	chr1	171001474	171002474	+	590.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-16952.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	3.76888198938213	3.39810887131714	3.7467861962905	3.98705877570203	3.86874064250113	3.81731507325161	0.812926069490779	0.144210301101901	0.506955860361989
Merged-chr1-79760868-3	chr1	79760370	79761370	+	851.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	899.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	6.03964131895618	5.92955977818546	5.72911333701796	6.17625092167304	6.04911271501202	5.64848720894951	0.129709757634871	0.690415588879257	0.917823389001164
Merged-chr8-105413605-4	chr8	105413110	105414110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177791)	promoter-TSS (NM_177791)	-12.0	NM_001170788	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	3.63741082735099	3.24617507749669	3.36516577322851	3.49976660040067	3.30744274776758	3.37990987840736	-0.12632965556771	0.837744681430634	0.96222208690411
Merged-chr1-121334476-4	chr1	121333983	121334983	+	949.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1894.0	NM_178082	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	4.29010267221376	4.14750838979775	4.13454857342716	3.87591776809591	4.25422593128504	3.90192288937383	-0.450460980694009	0.376278628361292	0.759143697747295
Merged-chr17-69226167-4	chr17	69225670	69226670	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 3 of 21)	RLTR16|LTR|ERVK	51036.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	6.01965428922521	6.21232875173234	5.96660115539817	6.39892158364047	6.55084868233272	6.14562602812697	0.517502752254646	0.0806849300631885	0.375903228482519
Merged-chr16-24859952-4	chr16	24859431	24860431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138076.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.75662265188121	5.78034055245736	5.57896898548157	5.74652929268129	5.72052599327201	5.49281203743873	-0.0897104682603109	0.779170593262285	0.945710994231145
Merged-chr8-83719442-1	chr8	83718942	83719942	+	756.0	f1_c57bl6.idr	exon (NM_197982, exon 2 of 11)	exon (NM_197982, exon 2 of 11)	4265.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	3.35536926683629	3.16534302769485	3.6391778563664	3.35418000318207	3.61821203906294	4.14996260381029	1.20378307074472	0.0690084207420603	0.343687428296505
Merged-chr3-79789095-4	chr3	79788603	79789603	+	878.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51152.0	NM_212452	381489.0	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	2.42096880678631	2.6776415408214	2.58904275964835	2.74506617613857	2.6222690833313	3.077450351645	1.37538851713221	0.089022489576823	0.396349901691278
Merged-chr10-14200506-3	chr10	14199966	14200966	+	656.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234087.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.57980923801855	2.56787276829213	2.6631941296041	2.27997353425383	2.66358193278091	2.54982098620563	-0.529590517601211	0.533747758870469	1
Merged-chr9-108460584-4	chr9	108460108	108461108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	90.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	7.05911298748579	7.13722326381804	7.0463691359749	7.28193102743124	7.19318086669435	7.2870848447901	0.253535992620137	0.275535348517669	0.673068880587683
Merged-chr7-100965293-4	chr7	100964791	100965791	+	917.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-925.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	5.13269712470612	5.07679392168373	5.07952784805273	4.82298253625083	4.86838473524446	4.89538794024676	-0.511768029472135	0.166969877234322	0.542555923962723
Merged-chr11-70897919-4	chr11	70897414	70898414	+	853.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019400, intron 5 of 17)	intron (NM_019400, intron 5 of 17)	53153.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	4.52437598592873	4.27797599160613	4.52372328276548	4.42618292705627	4.58039151013529	4.58997551020109	0.229571773908793	0.596995382998321	0.88011264230803
Merged-chr14-75184515-3	chr14	75184020	75185020	+	866.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	RMER1B|Other|Other	48095.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	5.12995768118342	5.17918741594062	5.01753283279422	5.41618194366593	5.33939678951031	5.35206627420704	0.508923771133194	0.143660446751532	0.505976654107998
Merged-chr12-83928047-4	chr12	83927560	83928560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6126.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	6.10553407405719	5.84578645267251	6.07340525984704	6.06215836934163	6.44148155170336	6.02044522575116	0.326775852050956	0.293645756417101	0.690424156263798
Merged-chr1-155095442-2	chr1	155094942	155095942	+	748.400024	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010500)	TTS (NM_010500)	4194.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	3.50251559663104	3.43939894166874	3.45863492723381	3.49854796878753	3.40876274254121	3.41798966608546	-0.0953717611598422	0.868731511220777	0.969714280155861
Merged-chr18-67700542-4	chr18	67700043	67701043	+	928.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24078.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	5.75591174102629	5.57384383231878	6.00718432476249	6.18511939426737	6.54039971586281	6.51082380024454	1.10054106660263	0.000397712281917362	0.00874777783605073
Merged-chr9-98298963-4	chr9	98298475	98299475	+	896.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	2405.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	3.04725581693956	3.02256064466554	3.3290306137998	2.76943881160559	2.90566015846105	3.07484242459889	-0.999649880797563	0.157106617319855	0.528076243746738
Merged-chr11-100861448-2	chr11	100860948	100861948	+	612.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001164062, exon 2 of 18)	exon (NM_001164062, exon 2 of 18)	964.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	3.08629401993237	2.76157010048958	3.12222468616487	3.12528651817442	2.77680247325084	2.89688551037381	-0.265237655284322	0.716055709716362	0.926567177471454
Merged-chr12-12316912-4	chr12	12316438	12317438	+	971.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	MLTR14|LTR|ERV1	54799.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.66401473829536	5.77657032885431	5.65687274514351	5.53263280608531	5.43468354697072	5.95673312626132	-0.103573670854399	0.760901783178903	0.941046607439565
Merged-chr6-112728886-4	chr6	112728376	112729376	+	975.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 20 of 21)	intron (NM_080448, intron 20 of 21)	-32206.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	4.77243265497703	4.39946679376441	4.3565904849195	4.50398173931837	4.20229481455212	4.33307988706214	-0.459713498804881	0.321506531542713	0.714890448587853
Merged-chr5-43849420-3	chr5	43848932	43849932	+	720.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-19377.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.70760941718767	4.47151130900022	4.96756252762699	4.44738274930397	4.064891414433	4.48749593832509	-0.960010905055414	0.041231487436084	0.253512865335231
Merged-chr5-62711187-4	chr5	62710686	62711686	+	952.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 7 of 32)	intron (NM_178407, intron 7 of 32)	54991.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.15772083421325	4.11384107086511	3.89987477085016	3.9860382100305	3.95876743869843	4.1643890691527	-0.106136036447581	0.830229796090497	0.960219727001139
Merged-chr16-10356273-3	chr16	10355763	10356763	+	842.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-24978.0	NR_126064	381033.0	Mm.263108	NR_126064	ENSMUSG00000116270	Gm1600	Gm1776	predicted gene 1600	ncRNA	3.38903930389858	3.60519856097432	3.64405633001121	3.4890938297531	3.26736747026395	3.55939871648145	-0.409485939171936	0.491214405810862	0.830448151501811
Merged-chr7-80197502-2	chr7	80197002	80198002	+	853.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	-939.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.31006480138004	4.20588484984803	4.26605792864649	4.4192469350348	4.26286176606477	4.28862650465962	0.1704659142115	0.705089801933861	0.92270290989203
Merged-chr13-106813395-4	chr13	106813008	106814008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	123450.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	6.04439520189876	5.79651633945736	5.98391131280072	5.55593255720452	6.04270355482302	5.95342371734028	-0.12636056429532	0.698589169054841	0.920392761604545
Merged-chr8-109608515-4	chr8	109608001	109609001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_020046, exon 1 of 9)	5' UTR (NM_020046, exon 1 of 9)	172.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	6.8104813049018	7.3347524010252	7.36698550871094	7.23721281208421	7.42105479027756	7.14896175194883	0.12986006086624	0.637690910353333	0.89735407749672
Merged-chr10-80696121-4	chr10	80695615	80696615	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	5705.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	7.58190626923823	7.45105674126042	7.16086226751907	7.43907930222991	7.87836892904656	7.42083356399774	0.276532811083176	0.302222532882272	0.698958713820873
Merged-chr7-99858986-4	chr7	99858464	99859464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025668)	promoter-TSS (NM_025668)	-81.0	NM_025668	66624.0	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	7.12946753151118	7.21575524063357	6.7088563183498	7.01155732154613	7.05727541385309	6.75122740580434	-0.141965198613457	0.606180010244073	0.883895524399136
Merged-chr6-88899683-2	chr6	88899183	88900183	+	874.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	-903.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	3.61208513105607	3.92949247173395	4.17617068709933	3.96335114421626	4.03109177546326	3.76399113001917	0.0323259605900526	0.953254346671282	0.989402101559525
Merged-chr11-101725180-4	chr11	101724683	101725683	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7773.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	4.60340820383359	4.50757033695679	4.13346401586479	4.41976963646128	4.58372283243754	4.04313656752123	-0.14867051491137	0.767478423903635	0.942617496111852
Merged-chr15-98762275-4	chr15	98761789	98762789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	703.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	6.85656814062314	6.64922570914266	7.03331042648393	6.98678500065024	6.95632877694207	7.24539428611744	0.329506478928021	0.211733187127646	0.604097347226619
Merged-chr14-46822249-4	chr14	46821759	46822759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022023)	promoter-TSS (NM_022023)	-17.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	8.19257367310392	8.42121333928558	8.17180262355389	8.23781766605039	8.4324502412821	7.93189868733959	-0.0623359815871866	0.794912079455218	0.950945932101356
Merged-chr8-34865698-4	chr8	34865166	34866166	+	803.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 11 of 26)	intron (NM_175091, intron 11 of 26)	58056.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.3739775579207	3.41338679259206	3.26320972610726	2.91023241258693	2.81468423021708	3.0400332352161	-2.08824595210796	0.00296810309156247	0.0417884808870947
Merged-chr1-131360954-4	chr1	131360451	131361451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-81388.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	6.51992960168271	5.88734825464654	5.83660577068738	5.87615294784498	5.7502052828009	5.7385953622943	-0.593666639550869	0.0877435387049212	0.392989792688076
Merged-chr13-93305315-2	chr13	93304815	93305815	+	807.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_147176, intron 1 of 9)	intron (NM_147176, intron 1 of 9)	1558.0	NM_011982	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	3.87176596080284	3.84349502057909	3.70037321648337	4.03974955735582	3.9030267784297	3.71656251658307	0.269214698067396	0.610589519067348	0.885676255187154
Merged-chr11-34030690-4	chr11	34030184	34031184	+	890.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16244.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.41456508860763	6.68035014617988	7.00278806717722	7.31446942876064	6.94937759927843	7.15133957687643	0.109336066376116	0.71620241912784	0.926569584146506
Merged-chr16-31064745-2	chr16	31064245	31065245	+	699.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	MTE2a-int|LTR|ERVL-MaLR	16687.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	2.1495727740534	2.25193230254066	2.42090431346951	2.56428681167695	2.34592873538111	2.74192159515169	1.83613621674714	0.0400138356820079	1
Merged-chr9-110880211-4	chr9	110879735	110880735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146228)	promoter-TSS (NM_146228)	61.0	NM_001146059	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	4.43299443778692	4.40326534795524	4.1256174640982	4.21768975839285	3.92568925403534	3.82268961673463	-0.930283641861036	0.0659663056393395	0.335221959181517
Merged-chr5-118408189-4	chr5	118407664	118408664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-152555.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.43869801053666	5.02926976686623	4.68016011979887	4.71262360284488	4.34258348738156	4.21270917311005	-1.49164184151359	0.00192585859238566	0.0300368962990115
Merged-chr2-4458484-4	chr2	4457989	4458989	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	57513.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.76895019709998	4.43664134270582	4.39961232061318	5.61643044523926	5.78816527921472	4.89552999796937	2.00186644447258	1.18082119453579e-05	0.000461501972545487
Merged-chr14-103102729-6	chr14	103102271	103103271	+	851.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3205.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	2.49822342126432	2.62594056876907	2.78363384418548	2.64489045581779	2.57345258794739	2.6119364939154	-0.150855063929465	0.843871746758541	1
Merged-chr1-91258112-3	chr1	91257652	91258652	+	655.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355764, intron 3 of 10)	intron (NM_001355764, intron 3 of 10)	7586.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	3.85110769692174	3.8888332895684	3.95637724485023	3.85325151594596	3.83484728121487	3.72026658383783	-0.281174152352634	0.58503384756234	0.87477909583779
Merged-chr15-102073212-2	chr15	102072712	102073712	+	957.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-561.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	4.40546919148819	4.5314027350914	4.19084407088152	4.38027580838017	4.29455937655206	4.10974265835192	-0.316077731789872	0.498245685431176	0.833856267944725
Merged-chr9-96326618-4	chr9	96326091	96327091	+	919.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37124.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	4.26431043296993	4.11223970277047	4.50795655160673	4.71829428946646	4.79000608115935	4.76959106474046	1.16826904643969	0.0073403294560265	0.0808972362088812
Merged-chr18-36734467-3	chr18	36733966	36734966	+	727.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-604.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	6.6988673620227	6.92448413771463	7.01055670384451	6.93771353977048	7.24092191866723	7.39016984247307	0.48651323484816	0.0678446622094735	0.340874262008687
Merged-chr7-19471912-2	chr7	19471412	19472412	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-13418.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.85391414975811	4.66986273975139	5.25590807258853	5.89622708596682	5.96476911826318	5.88856689231158	1.94318291235785	8.38645404668653e-08	6.11586387657049e-06
Merged-chr8-70626314-4	chr8	70625802	70626802	+	917.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	5793.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	5.11840554322764	4.98205605414257	5.24589975210479	4.72113021131214	4.59989655046349	5.02533447965843	-0.734484107758893	0.0651640268457203	0.332860707068093
Merged-chr2-113494887-2	chr2	113494387	113495387	+	796.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 3 of 16)	intron (NM_001285459, intron 3 of 16)	53823.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.32322499974444	3.25921066104624	3.13071540565721	2.94698558785572	2.92430035451921	3.08475724561905	-1.21379386621368	0.0697446420234828	0.345682164253631
Merged-chr11-79296315-2	chr11	79295816	79296816	+	925.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41621.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.67912057789706	3.4512887016612	3.4452963296978	3.32855561780282	3.49851593195342	3.22022911155289	-0.636894792201609	0.302399290111456	0.699062610540422
Merged-chr13-37486462-3	chr13	37485949	37486949	+	864.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	141104.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.9085896394543	2.87579636208876	2.84844545380088	2.56170906247907	2.38739604607004	2.60820385257151	-2.23699478295439	0.00734322698838861	0.0809184520262004
Merged-chr2-102899861-2	chr2	102899369	102900369	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1796.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.35739686680029	7.16776395291202	7.04670074257483	7.31139699519347	7.49920470246729	7.52719471185548	0.36369858289521	0.133670700037256	0.488926137304149
Merged-chr4-150087295-4	chr4	150086806	150087806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177366)	promoter-TSS (NM_177366)	-197.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	6.91128296482354	6.84699501645469	7.19456575160955	7.25333079095348	7.09973178970403	6.34100783688132	-0.0340203572213626	0.916845513191104	0.981431795618389
Merged-chr14-77537165-4	chr14	77536589	77537589	+	867.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-30221.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.93672765519599	2.85507685635404	2.85131054430099	2.67381480839971	2.57820914780242	2.73920335953157	-1.20927950899973	0.103592737332548	0.429151916144304
Merged-chr19-26853910-4	chr19	26853411	26854411	+	838.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30004.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	2.30113953700826	2.33938294233549	2.75306137040357	2.18758565646742	2.32544804924677	2.40726108412063	-1.05207279899169	0.235519367860204	1
Merged-chr11-77404186-3	chr11	77403673	77404673	+	719.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 4 of 14)	intron (NM_177710, intron 4 of 14)	55893.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	5.05997533852939	4.92529515968124	5.04561640513217	4.73565138950206	4.78489889225447	4.97284774102024	-0.401486393926186	0.293872913213785	0.690438710263513
Merged-chr1-86417783-2	chr1	86417283	86418283	+	785.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8546.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	6.68277120062659	6.76138120485357	6.40389302025895	6.40552343681441	6.40487358397555	6.50089911204177	-0.322056326091714	0.235483777424	0.631661320177181
Merged-chr1-88224255-4	chr1	88223754	88224754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2766.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	6.17700754627418	6.05696011061478	6.21803788845061	6.33827266428474	6.36566334455676	6.78240524793638	0.58203362106866	0.0479769438534595	0.277689856856444
Merged-chr11-115004249-4	chr11	115003751	115004751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2371.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	7.31297595469832	7.40660062099619	7.19420769223344	7.5156122700507	7.67673577580999	7.31201091434202	0.303331410967965	0.210199576639525	0.602200074865266
Merged-chr12-54791245-3	chr12	54790761	54791761	+	751.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026998, intron 2 of 13)	RMER17D|LTR|ERVK	4401.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	5.46304711059783	5.40060497998853	5.65443446152055	5.82383408078376	5.46836539471078	5.86365797832346	0.406954949151424	0.22969094558202	0.62537627040963
Merged-chr7-83651649-2	chr7	83651149	83652149	+	944.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 14 of 18)	intron (NM_001360088, intron 14 of 18)	3846.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	4.97804341997283	5.03197596265609	5.19728253810332	4.78887776912402	4.80817111348787	5.00050510538915	-0.444728906451669	0.241834645030908	0.638862793574907
Merged-chr8-39427465-2	chr8	39426962	39427962	+	882.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	129482.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	3.6300732326203	3.82026857916001	3.61451563808258	2.93770434008401	3.21797051007384	3.10568979723651	-2.48391358163468	0.000550054858635024	0.0113233460359483
Merged-chr2-26502490-3	chr2	26502010	26503010	+	792.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008714, intron 1 of 33)	CpG	1312.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	5.42358602760208	5.59372647330567	5.51241153785692	5.38950447319178	5.38718103134149	5.65532868554109	-0.0747983181865826	0.822985499291741	0.958203585272257
Merged-chr10-20058278-4	chr10	20057773	20058773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 9 of 29)	intron (NM_008580, intron 9 of 29)	-90647.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	6.53206212602399	6.63746092069825	6.52704986453994	6.38664675724473	6.58940307217878	6.19242697521497	-0.250177129953683	0.369376107780448	0.754116709983023
Merged-chr9-32562621-4	chr9	32562139	32563139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21187.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.49554590679326	4.14142902975647	4.24037037060002	4.42352906631624	3.96253422156439	4.26297179538691	-0.211209317588767	0.669319499138796	0.909615408611738
Merged-chr10-77970647-4	chr10	77970129	77971129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-757.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.67858034650793	7.63488716565561	7.70015720820992	7.82643786011463	8.01804264449194	7.55736843401838	0.220841714753202	0.351555915406288	0.739384389685474
Merged-chr19-4215360-5	chr19	4214820	4215820	+	939.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310039, intron 1 of 2)	CpG	931.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	5.99040847020991	5.91124283952346	5.78022835628934	5.65589522518129	5.22028885247386	5.41781529001724	-0.855798176955778	0.0105165505429701	0.104037705098021
Merged-chr1-9944918-2	chr1	9944371	9945371	+	792.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-753.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	5.4894332284593	5.61092698490592	5.6665235548136	6.15798196597424	6.12247619258456	5.75661033486647	0.802296115193563	0.0114646942070352	0.110744633802993
Merged-chr12-79168539-3	chr12	79168056	79169056	+	998.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	3902.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	6.8388595414223	6.88384357369191	6.77562162645088	4.40444217975538	3.96927072655718	4.80477656493089	-5.73660808700973	1.79409075488e-27	5.52898901970573e-24
Merged-chr18-11773763-2	chr18	11773267	11774267	+	655.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65507.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	3.29108767555709	3.45866406639489	3.30649030656136	3.4814360392389	3.60556762966692	3.74736375778647	0.952625691498525	0.108187338352448	0.439398218728357
Merged-chr2-29346728-4	chr2	29346213	29347213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026896)	promoter-TSS (NM_026896)	-97.0	NM_026896	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	4.99720918014644	5.46264214876833	5.15506124857273	5.36312913140191	5.33495712125359	4.70448799120527	-0.0904730575881101	0.830721758037391	0.960370002015736
Merged-chr5-136087505-4	chr5	136087029	136088029	+	828.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	3613.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	5.47037725761158	5.45996321649795	5.66452018474552	5.74945743682043	5.99080347270578	5.77815580402272	0.602659456917237	0.0589453546196392	0.314224169850147
Merged-chr2-45238336-2	chr2	45237836	45238836	+	944.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120894.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.45139080408728	6.41638700372557	6.49229637759405	6.39822630386092	6.44929509018415	6.65130505085118	0.0742816228825846	0.780791279845289	0.946078518476608
Merged-chr4-126753051-2	chr4	126752551	126753551	+	774.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355413)	promoter-TSS (NM_001355413)	378.0	NM_011986	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	5.72698216825173	6.07490792617981	5.78033713655774	5.72571751000005	5.90708491051016	5.68151634417914	-0.166112276250121	0.604636021450975	0.88314896167691
Merged-chr11-117338687-3	chr11	117338170	117339170	+	956.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	6357.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.74932774303618	3.22805912710647	3.31721755225106	3.25681193020395	3.02189340389317	3.50047050933639	-0.718492751159055	0.290861881595132	0.688664305177637
Merged-chr2-30132125-3	chr2	30131611	30132611	+	879.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1635.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	4.89221803992433	4.79467872306023	5.16053570483826	5.49130629709913	5.4809727497291	5.25762301831585	0.978927077368897	0.00754890357140594	0.0825788196542018
Merged-chr1-105991352-5	chr1	105990900	105991900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001122676, exon 1 of 14)	exon (NM_001122676, exon 1 of 14)	994.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	8.31472184320053	8.61161814130669	8.22172101121112	8.22456396153566	8.30592724285509	8.31523563112134	-0.16288029919507	0.463672975897149	0.816038286358001
Merged-chr2-165855800-4	chr2	165855309	165856309	+	975.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	2364.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.89306327463781	6.57743767060121	6.48973199374862	6.60293014971998	6.94243448027182	6.63822007728866	0.114766040859386	0.68607691311548	0.91659539440007
Merged-chr5-115559415-4	chr5	115558897	115559897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-70.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	7.73027479364918	7.58017927816348	7.61371400775074	7.60904564892957	7.53938225496407	7.57545812954338	-0.101861504822495	0.642932254228344	0.899548231805501
Merged-chr15-88862022-4	chr15	88861526	88862526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145478)	promoter-TSS (NM_145478)	-168.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	8.46875675598123	8.59173924221141	8.20804094443672	8.32146954142636	8.31376319082407	8.07451494262224	-0.268601447730666	0.236342457431687	0.632720263621021
Merged-chr10-26862883-2	chr10	26862383	26863383	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 5 of 14)	intron (NM_176837, intron 5 of 14)	90371.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	2.30510082858562	2.20251724713435	2.44678607398756	2.2785479748586	2.22807425411598	2.33040972434247	-0.270792482256866	0.749195940555746	1
Merged-chr15-91191436-4	chr15	91190944	91191944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	563.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.43971669660342	6.78244641921018	6.47748020200173	6.58544042886414	6.90504426184856	6.50011602381291	0.166067752929411	0.564156179501207	0.866201054824694
Merged-chr9-50834164-3	chr9	50833645	50834645	+	801.518494	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045601, intron 13 of 13)	intron (NR_045601, intron 13 of 13)	-22779.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	2.85071713658187	2.8584101593408	2.88347132156643	2.79726969630961	2.57389575441622	2.89654596483987	-0.556118372120019	0.450640250365318	0.808443910792592
Merged-chr11-69555433-2	chr11	69554933	69555933	+	666.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	4804.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	3.50337829457027	3.7735911279003	3.70343792403891	3.51871300305498	3.6408876522985	4.09622282348803	0.338353228201234	0.563669186712148	0.865992481769395
Merged-chr4-108295362-4	chr4	108294848	108295848	+	820.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	5742.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	3.0073093076514	2.89933032322033	2.86556305773536	3.02439065251049	2.81625217044152	3.00008862379877	0.0881792218557009	0.898739663891731	0.976432549466174
Merged-chr9-45095311-3	chr9	45094813	45095813	+	978.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16130.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	6.67400096172959	6.74666333485053	6.78826939537667	4.61334718611483	4.43303726962792	5.02166902066542	-4.1336612801736	5.8989891843298e-27	1.44365615308739e-23
Merged-chr10-25284123-2	chr10	25283623	25284623	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	15040.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.97176455279852	6.0819230682944	6.01849947880187	5.4847681551207	5.86206896630667	5.56895773255871	-0.646473376271909	0.043582350531649	0.262366077221601
Merged-chr15-75940981-4	chr15	75940476	75941476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030199)	promoter-TSS (NM_030199)	24.0	NM_030199	78834.0	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	5.77629329560852	5.8828691783963	5.85778123872955	5.78970855465956	5.59555257616978	5.7438900782034	-0.239539495279655	0.436164034303937	0.799461119181469
Merged-chr13-107758995-2	chr13	107758495	107759495	+	773.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71598.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	6.10102361406138	6.22651933070367	5.97026930284199	5.92587333216053	5.92020124497689	5.93577468693464	-0.319222150309035	0.274893446360518	0.672250812190037
Merged-chr12-111699463-4	chr12	111698977	111699977	+	953.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13476.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	4.13078082024195	3.88786535233239	4.23262280635385	4.34697793466528	4.30211605671403	4.16256283811188	0.537173189968922	0.263364820310425	0.661383847170923
Merged-chr6-131387734-4	chr6	131387244	131388244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011733, intron 1 of 8)	intron (NM_011733, intron 1 of 8)	706.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	4.46518295734299	4.19381781548281	4.23153863447825	4.10343515634048	3.80205573585569	4.25472421888557	-0.700911531607333	0.161866523571052	0.535019849578936
Merged-chr13-52614381-2	chr13	52613881	52614881	+	593.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	17499.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.75048984762064	6.94806074400097	6.82340915281666	6.81703827648227	6.56106740853932	6.40353397298225	-0.366855056497485	0.175013894439665	0.554700648631989
Merged-chr19-55742648-4	chr19	55742145	55743145	+	798.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 1 of 15)	CpG	835.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.00892991599532	7.45945544188054	7.52858926819475	7.51408566785249	7.4402841868038	7.65866962493914	0.277171464763844	0.286995190689447	0.684323804399215
Merged-chr15-67088303-1	chr15	67087803	67088803	+	561.5	f0_balb.idr	Intergenic	MER53|DNA|hAT	88579.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.4570746453162	3.54588036360902	3.20879032659097	3.34945738631718	3.17923945173335	3.39761688874664	-0.442747737051619	0.479137089208904	0.8240495282712
Merged-chr2-60870693-2	chr2	60870193	60871193	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	10745.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	3.50886851348852	3.42146498630969	3.6288484562339	3.66738556658311	3.46640817021287	3.54008850369572	0.150379595066503	0.792155204952865	0.949928666249466
Merged-chr5-72867602-5	chr5	72867091	72868091	+	808.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	857.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	3.03074018577126	3.37983852359835	3.02283824791619	3.13378896349204	3.0357640606492	3.15677642452726	-0.235889519631949	0.726052447204295	0.929743505822386
Merged-chr9-46120108-4	chr9	46119638	46120638	+	991.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	107318.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	3.83973598941283	3.90977208445498	3.39666971842895	3.89118648494265	3.83142918450229	3.71059870921768	0.229879336749072	0.695067068355277	0.919230570201314
Merged-chr15-38303502-2	chr15	38303002	38304002	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-2791.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.06251910520594	2.68211912461917	2.83374530965701	2.82203624386835	2.95818380858463	3.02756890194986	0.316093839189494	0.665038759031014	0.907721942545399
Merged-chr17-5496392-2	chr17	5495892	5496892	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	3792.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.97976436835129	4.97872646078423	4.6034182967434	4.74374490401669	4.53055102478629	4.62840109963841	-0.55996869598885	0.17764480641849	0.558706727133464
Merged-chr11-85671301-3	chr11	85670792	85671792	+	820.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48452.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.5108123374093	5.86410083684478	5.39884373681626	5.13222360562823	5.14778958566444	4.93388244371329	-1.05198181261043	0.004300818882567	0.0549374482008957
Merged-chr12-85599318-4	chr12	85598820	85599820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030887)	promoter-TSS (NM_030887)	-96.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	8.35193959015382	7.95234696613306	7.81002835720583	8.20815706379382	7.98163974207753	7.68413527540031	-0.119233657517019	0.655928508220099	0.904511343918715
Merged-chr19-14635463-4	chr19	14634978	14635978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37295.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	5.36873651045863	5.29503944509724	5.37812266932905	5.48064208739985	5.19359013908959	5.71123264475733	0.231679836697816	0.516587638095965	0.844296391152365
Merged-chr6-116487019-4	chr6	116486532	116487532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-6579.0	NM_146912	258914.0	Mm.391507	NM_146912	ENSMUSG00000053391	Olfr211	MOR253-9	olfactory receptor 211	protein-coding	5.96428339937053	5.7817906418508	5.85088270752798	5.93416127398287	5.89589086132089	5.73143693117903	-0.0101622684419374	0.973310923139704	0.994013566033857
Merged-chr17-34649843-2	chr17	34649356	34650356	+	888.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2710.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	3.96399986199546	3.67317678918811	3.95614250825677	3.96427378425306	4.10845473742049	3.82215605377151	0.337593521239897	0.520498378883811	0.846502924186701
Merged-chr12-85702834-2	chr12	85702334	85703334	+	747.458374	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16114.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	3.19380990940904	3.25748840046037	3.55309720776789	3.42955968815304	3.05508364420263	3.36112267458607	-0.19823020422667	0.760209069176162	0.940679065118234
Merged-chr9-108847023-2	chr9	108846523	108847523	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359572, intron 33 of 35)	intron (NM_001359572, intron 33 of 35)	-7020.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	2.84468068716907	2.66542217322382	2.88623051605353	3.06818533366277	2.71656798758864	3.13333153705728	0.878596757651041	0.234679603099652	0.630784177826417
Merged-chr18-84681501-1	chr18	84681001	84682001	+	541.0	f0_balb.idr	intron (NM_023149, intron 2 of 11)	intron (NM_023149, intron 2 of 11)	558.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	8.15105215946288	8.50028514983603	7.81284118834425	8.26557403271239	8.58543241938062	8.02605645750456	0.176634840381592	0.527193045035438	0.849865911564412
Merged-chr3-138512669-2	chr3	138512169	138513169	+	875.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13522.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	3.03238062232391	3.09209549272303	3.13546440614506	3.29937937273678	2.75027410112732	2.96679044087131	-0.265707882727124	0.712881734907428	0.92531822516521
Merged-chr2-122234427-2	chr2	122233928	122234928	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	-411.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	5.56087407763645	5.55205966728689	5.09204434632005	5.02245588045451	4.80792634126915	4.67064531171322	-1.21321340789716	0.00213981438375264	0.0325026789418199
Merged-chr10-8868807-2	chr10	8868307	8869307	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	17263.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.37319300625376	5.13696820406554	5.21128614214048	4.83282128426906	5.0741183610045	4.96557212936127	-0.583761316082026	0.116781172219885	0.456293525778212
Merged-chr19-40659699-4	chr19	40659210	40660210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-60.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.50381555697002	7.83195262136596	7.36404421395316	7.30031255057016	7.87804331479908	7.25593837918271	-0.0946844335744857	0.745026423603217	0.936032341688524
Merged-chr10-79853447-6	chr10	79852815	79853815	+	943.6555789999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-1117.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	7.51637841923402	7.72412531800159	7.84385586845137	7.73165396929031	7.79279868470923	7.72582098389325	0.0788496486747236	0.727922866751193	0.930342312248606
Merged-chr16-22119720-4	chr16	22119248	22120248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43551.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	8.75970033707537	9.16342733735749	8.37916040387124	8.81110675376846	9.34458053298175	8.55223168814234	0.190857680328063	0.530244761693299	0.851070276054813
Merged-chr4-117129327-2	chr4	117128832	117129832	+	625.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175030)	TTS (NM_175030)	2519.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	2.45725013128042	2.45977648428812	2.91461773992351	2.45959115216299	2.53597829362801	2.63942344771303	-0.434113095122419	0.595524722781828	1
Merged-chr8-47676041-1	chr8	47675541	47676541	+	1000.0	f0_balb.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-882.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	7.70021535975322	7.50514701878209	7.50560219605565	7.67883250042941	7.87355957092484	7.87434960170795	0.340731501441159	0.132329678889087	0.486626062712829
Merged-chr12-77092642-4	chr12	77092144	77093144	+	922.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130396.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.4505860611539	3.5682418054986	3.62725192474117	3.44198293894163	3.48643799840393	3.64563272977222	-0.0898178610541396	0.874702291772544	0.970754540400126
Merged-chr16-33382558-2	chr16	33382058	33383058	+	979.2000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	1256.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	5.20405228804392	5.57360519175143	5.73028729054847	5.59692240247424	5.67539241234438	5.88611908980609	0.385393339424268	0.268882372423646	0.666046394707712
Merged-chr18-75247056-2	chr18	75246556	75247556	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027727, intron 16 of 16)	MTD|LTR|ERVL-MaLR	50261.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	2.2137286831564	2.27121933066385	2.35028959667231	2.02801788578915	2.10937084318328	2.16564020680982	-1.31526464885724	0.148158708624761	1
Merged-chr2-32876875-3	chr2	32876364	32877364	+	787.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	730.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	4.40293541391851	4.50977862126084	4.66523185226223	4.07580133393431	3.70620031721595	4.10680653638704	-1.5792896338178	0.00160305057428253	0.02606735043676
Merged-chr11-106074254-2	chr11	106073754	106074754	+	598.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027346)	TTS (NM_027346)	8147.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	3.31430556094583	3.13362208497718	3.6511051492954	3.48524522970412	3.34661678506779	3.67140096407496	0.472485173170658	0.455855970541135	0.811181856218708
Merged-chr1-33994425-3	chr1	33993940	33994940	+	856.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-17385.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	2.83619188187434	2.81855578452857	3.01872478341348	2.7668057319265	2.51496594179526	3.03444041506532	-0.535402537484985	0.490642696812072	0.830121950311893
Merged-chr8-46072315-3	chr8	46071855	46072855	+	584.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 5 of 17)	MTD|LTR|ERVL-MaLR	51791.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.1946172170615	3.39251002665494	3.32354110426339	3.26344835240923	3.29219075761454	3.65414527354045	0.392037154299966	0.530535097511467	0.851204116136432
Merged-chr7-141326797-2	chr7	141326297	141327297	+	913.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282073, intron 1 of 11)	intron (NM_001282073, intron 1 of 11)	928.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	4.03805430217528	4.02651982970885	4.24199358546695	3.85063167827804	4.0599358638185	4.17861464686465	-0.191417947841471	0.699531670253559	0.920619136555148
Merged-chr5-124327591-4	chr5	124327092	124328092	+	891.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	380.0	NM_001081323	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	6.83083397137505	6.98145774874943	6.87137903443294	6.74052214287425	6.82233757690706	6.81182067351222	-0.163522594428087	0.507266805126114	0.838904804247997
Merged-chr4-53118927-4	chr4	53118413	53119413	+	921.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	40982.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.42730169205459	5.91665084339355	5.9077774992053	6.32377077744742	6.24859341388086	6.36220054911681	0.321322118682569	0.30632896132503	0.702504893198242
Merged-chr16-55820690-4	chr16	55820190	55821190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1448.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.58422394322871	7.80228485048223	7.11935522727367	7.49973309483931	7.77580322677553	7.12246289324343	-0.0556499223212261	0.853452087871885	0.965687837146459
Merged-chr10-57785955-4	chr10	57785384	57786384	+	983.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021272, intron 2 of 3)	intron (NM_021272, intron 2 of 3)	961.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.46247767546658	7.85619265559916	7.76885821856346	7.14988418084646	7.69230249611794	7.43431300582974	-0.371485928783919	0.166436391665781	0.541710904663653
Merged-chr7-64142154-1	chr7	64141654	64142654	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-11681.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	8.3140941057165	8.65434642689382	8.2679148340198	8.3539672147176	8.59827245592074	8.09797155455437	-0.0762052116704726	0.758593667545124	0.940238956833371
Merged-chr6-143050393-4	chr6	143049863	143050863	+	931.724976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362117, intron 11 of 26)	intron (NM_001362117, intron 11 of 26)	49789.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	4.78717794834841	5.09884483841201	5.32576604200357	4.57085009538687	4.83957220182575	4.76471849070675	-0.765559640114567	0.0662746264815898	0.336131849340493
Merged-chr1-171847139-1	chr1	171846639	171847639	+	830.0	f1_balb.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	7442.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	4.99850705426535	4.84600665417796	5.37112569988322	5.12186355743595	5.29957571148839	5.40519784109996	0.414235444836803	0.280603796242168	0.678675716586294
Merged-chr2-73467270-4	chr2	73466724	73467724	+	646.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-13335.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.56960753924588	4.23761219325896	4.25688139441089	4.1791145190445	4.19183683563476	4.65307373453759	-0.0476804738316348	0.921697350624202	0.982542868764899
Merged-chr4-150341392-2	chr4	150340899	150341899	+	817.25	f0_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 1 of 22)	MTA_Mm|LTR|ERVL-MaLR	59483.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	5.88019105977064	6.38577040461898	6.08762072282235	5.48933991632939	5.82148150108291	5.40705963698223	-0.953770749138496	0.00612942424498001	0.0708652400411695
Merged-chr19-55866433-4	chr19	55865923	55866923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-28898.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.70382377121946	5.40492965601829	5.38348964865968	5.09853148277165	5.33595945800954	5.22225581129324	-0.556522740881482	0.116611860263153	0.455969909247013
Merged-chr11-19493444-5	chr11	19492905	19493905	+	969.753357	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	428130.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	4.79384018725698	4.47200065808565	4.43724383573377	4.67416484988059	4.43189789421703	4.93136597962769	0.238606606126867	0.595889215720406	0.879742965115467
Merged-chr18-53227767-4	chr18	53227240	53228240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17922.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	5.81854012347561	6.10001616578891	6.06659361475599	6.48862004026763	6.4504464084773	5.82945832906548	0.510568809111105	0.121758862347102	0.466829283395647
Merged-chr7-126117056-3	chr7	126116533	126117533	+	803.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 14 of 23)	intron (NM_028816, intron 14 of 23)	-34622.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	4.37542153185268	4.51243068956403	4.4735324450034	4.4761583590093	4.38331967266473	4.62024812542901	0.0856148969945318	0.842788493969508	0.963161613177542
Merged-chr2-84801124-2	chr2	84800631	84801631	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	2303.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	3.76786900087319	3.81022869046495	4.28793831638095	4.06380962390492	4.26028429470129	3.8928494033749	0.355150824192201	0.510812499668595	0.84113866701804
Merged-chr10-108179722-2	chr10	108179222	108180222	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	17322.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	3.79258195831908	4.01666027123316	3.99312402247877	3.84435812488691	3.72874954833114	3.65172326461031	-0.605618002087919	0.252076431382626	0.649617120850337
Merged-chr13-52631672-2	chr13	52631172	52632172	+	926.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001198977, exon 8 of 14)	exon (NM_001198977, exon 8 of 14)	34790.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	2.65342924505148	2.75366946885426	2.83786555295779	2.85637758037624	2.67076651696863	3.19184437940038	0.840516507131827	0.264391831926673	0.662276944757498
Merged-chr2-117027341-4	chr2	117026846	117027846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93725.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	6.33219925052008	6.23482587710738	5.84785509427969	6.18294701039433	6.10565996517343	6.03497943975892	-0.0957556347160972	0.753147977200292	0.938549578325581
Merged-chr4-88450288-4	chr4	88449759	88450759	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11333.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	4.03711007888933	3.7447980605573	4.05867234023986	4.04906577050885	3.84449988620509	4.21532554618573	0.256721141958691	0.621370662452117	0.890674900862132
Merged-chr4-118152557-2	chr4	118152066	118153066	+	998.5	f0_balb.idr|f0_c57.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17620.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	4.83730067581435	5.2559424875254	5.30688010539231	4.60532872820456	4.94590359906281	4.80161815213961	-0.751945918617933	0.0689465924686828	0.343589151711934
Merged-chr12-111674804-2	chr12	111674303	111675303	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-2465.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	5.09319971508827	5.19335755358993	5.25790171151633	5.37126821499474	5.42230241444097	5.4425692274436	0.465724390469939	0.172523713374467	0.551113031062711
Merged-chr2-167741797-2	chr2	167741297	167742297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50620.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.70869009488553	4.39870049723555	4.89300930650395	4.4990888923185	4.53740052953509	4.32162282880129	-0.513980525571886	0.252711434371487	0.650078537173211
Merged-chr3-116130952-5	chr3	116130491	116131491	+	951.080017	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	5.57966271305055	5.49075611800175	5.55198682630873	4.91485975227517	5.20832855721142	5.12386082125088	-0.890299335569892	0.0116286709662445	0.111848162496737
Merged-chr9-118637023-2	chr9	118636523	118637523	+	553.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	MIR3|SINE|MIR	30314.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.64276970647322	3.79811732036	4.00945236576361	3.78885496646521	3.91603955729426	4.3688910229709	0.669867330030038	0.225265121669091	0.620082712843778
Merged-chr19-32389210-4	chr19	32388720	32389720	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	4.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	7.20974089831148	7.27207193183315	7.02002443264806	6.91669101518525	6.82816347061993	6.89579385064408	-0.456161489248257	0.0609709681750515	0.319944583485273
Merged-chr4-148497824-3	chr4	148497332	148498332	+	865.361084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039554, intron 2 of 4)	intron (NM_001039554, intron 2 of 4)	2630.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	3.88701330048324	3.5131197633169	3.71439210834402	3.19910063200017	3.12630293784104	3.2938952193703	-2.03886036828444	0.00137076698469428	0.0230833635842807
Merged-chr10-41810481-4	chr10	41809973	41810973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-101.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	7.43524841140641	7.80965752436678	7.74257747154484	7.40796214003352	7.52029641552101	7.41001065853042	-0.323467295338572	0.176410326188704	0.556666935473838
Merged-chr5-114130071-2	chr5	114129571	114130571	+	802.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040691)	promoter-TSS (NM_001040691)	-364.0	NM_001040691	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	2.82926322971423	2.66538840143958	2.76707187014708	2.68550203270439	2.50087065324915	2.58744380750915	-0.920572549125491	0.229544805219561	1
Merged-chr11-44416992-1	chr11	44416492	44417492	+	597.0	f1_c57bl6.idr	Intergenic	Intergenic	16929.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.0263594357098	6.04181442472082	5.80145406395999	6.16560106799299	6.27966038702055	6.17209345445449	0.409115923439882	0.159121787778146	0.531158781765317
Merged-chr7-90039667-4	chr7	90039178	90040178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	10519.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	8.25544002609245	8.16761158193628	7.82533203535173	7.95888352642609	8.30117081044802	7.60987953920625	-0.145487994554274	0.595418554957209	0.879492777122762
Merged-chr7-19936200-4	chr7	19935701	19936701	+	871.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR53_Mm|LTR|ERVK	14542.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	5.11111850766035	5.28752893246778	5.29218925892968	5.10350146088273	5.08155871299791	4.9500334585859	-0.371609811505166	0.304014572645884	0.700538481327022
Merged-chr3-131350782-2	chr3	131350282	131351282	+	801.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-5859.0	NM_028943	74442.0	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	2.35492188207037	2.39291530227616	2.36037766957951	2.03460340509091	1.95242198786581	2.10171938108919	-3.15333227078976	0.00426033649972091	1
Merged-chr4-116557589-4	chr4	116557098	116558098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-129.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	8.1518370566841	8.28655252488444	8.33967537258409	8.23865576243912	8.47314713956224	8.31188816693055	0.123980583708164	0.559653406223048	0.865015267733769
Merged-chr10-117373233-2	chr10	117372733	117373733	+	999.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 1 of 9)	intron (NM_001013391, intron 1 of 9)	3740.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	4.32831739650865	4.4368096756535	4.78265186170742	4.39629749313931	4.78020988446966	4.84701997525155	0.405079568398315	0.37104360964781	0.755248334635754
Merged-chr3-37312492-4	chr3	37311928	37312928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	18.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	6.84250488420583	6.81247353575088	6.61637187600997	6.7403788517486	6.41558310441833	6.51742847912012	-0.322516330098322	0.2305421963361	0.626341302534829
Merged-chr4-141618012-4	chr4	141617507	141618507	+	904.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001013780)	TTS (NM_001013780)	626.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	5.56818540154506	5.12939417786925	4.61167672946619	5.3091312242465	5.25202725398194	4.94736408108422	0.020214852197008	0.964346210762524	0.991465915893937
Merged-chr3-130804023-3	chr3	130803537	130804537	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73639.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	3.76599856215467	3.43522286757322	3.33512617326131	3.62122756188848	3.28780491121557	3.6857085046573	0.026582135634192	0.966029899000634	0.992207077743977
Merged-chr7-80081361-3	chr7	80080828	80081828	+	894.31665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6071.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.00996667342372	3.8889168513572	4.09912217025749	4.0444157520597	3.84216938382268	4.027574282333	-0.0844989943234086	0.865862156144062	0.968641478520565
Merged-chr5-92491931-2	chr5	92491421	92492421	+	817.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	13736.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.86385530776836	4.9848466067561	5.11486586849342	5.26198553392807	5.38405513737631	5.3377862058934	0.7166947091188	0.0451672184016305	0.268161702472049
Merged-chr9-59731297-4	chr9	59730816	59731816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19333.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	8.18811232063489	8.10902806461259	8.03566626664015	8.00964419044455	8.35154283139445	7.89836706521084	-0.00617809596796491	0.979008318351813	0.995160277495735
Merged-chr19-53424841-4	chr19	53424320	53425320	+	977.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34186.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	5.59264923190948	5.99057659529877	5.68644219421506	4.71167074967513	4.62458181924728	4.48340944749386	-2.41871483442302	1.30987933860926e-09	1.41732691816644e-07
Merged-chr15-38651666-4	chr15	38651168	38652168	+	939.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-10236.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	4.98880849437297	4.66276051010399	4.64865354533407	4.62901423969976	4.49824698059654	4.67481012200117	-0.437864881165979	0.296126079870293	0.692837106451674
Merged-chr16-91380455-3	chr16	91379984	91380984	+	986.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	7701.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.2419829042826	5.69843359070021	6.38940821672037	6.19913636796989	6.08493901877368	5.80302159565297	-0.154168046551176	0.654312189487193	0.90374091983316
Merged-chr12-40499706-2	chr12	40499206	40500206	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	53653.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	2.80841443906418	2.88989484463853	2.91742816638727	2.84291142906667	2.97750466479844	3.10380725409903	0.50847995186384	0.462897646364148	0.815511746112333
Merged-chr7-119895281-1	chr7	119894781	119895781	+	565.0	f1_c57bl6.idr	promoter-TSS (NM_001285959)	promoter-TSS (NM_001285959)	177.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	6.34612102237951	6.25886185845738	6.13017538421661	6.61260593108478	6.28777763953117	6.27691170741294	0.246460896982382	0.391330035307466	0.77033345281914
Merged-chr7-100507417-2	chr7	100507010	100508010	+	602.349976	f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 4 of 8)	exon (NM_153527, exon 4 of 8)	7305.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	3.16602485907738	3.08595211897404	3.31303082955778	3.51210129374374	3.58603667090367	3.84517180037595	1.82598781319683	0.00348173863398197	0.0470077086250806
Merged-chr17-56029778-2	chr17	56029278	56030278	+	816.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	6859.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	2.82804690430852	2.97126486113645	3.00623316754248	2.76021190888844	2.58219842852365	2.78013004821996	-1.21786794002607	0.10063779172333	0.423170146377512
Merged-chr14-49019978-4	chr14	49019459	49020459	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 13 of 17)	intron (NM_207214, intron 13 of 17)	-46590.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	3.74399054041702	3.76528159791632	3.61121736801248	3.69579466781311	3.61460712595409	3.93473070224591	0.111517143224571	0.838427473902674	0.962518552953479
Merged-chr2-90444796-2	chr2	90444296	90445296	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 20 of 23)	intron (NM_008982, intron 20 of 23)	34378.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.37051508293554	2.37782875331168	2.51049196344315	2.55745474479484	2.51508268164919	2.76736551308634	1.18296400213424	0.140749826729305	1
Merged-chr16-21915646-3	chr16	21915146	21916146	+	730.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172821, intron 9 of 12)	Lx8|LINE|L1	23677.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	4.37516820667405	4.16045903370825	4.08134959194176	3.74561855730893	4.23425135271265	3.94939384464145	-0.602116834560483	0.254318170073811	0.651297476085736
Merged-chr4-11455363-4	chr4	11454855	11455855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30603.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	5.64939730416946	5.93557004903081	5.69781222351869	6.16169888028918	6.27253980934739	5.81532251811098	0.588645495087467	0.0667876000976011	0.3377659167885
Merged-chr10-7781010-4	chr10	7780502	7781502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-85.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	6.58297293994368	6.6012917017743	6.25361913968816	6.56434411809645	6.6415306518045	6.37612021844333	0.06470900942939	0.817213453497997	0.956754861188725
Merged-chr7-128412169-3	chr7	128411656	128412656	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	6016.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.57902249976864	5.81877756787915	6.14251092889256	5.78777834677055	5.87455113492945	6.08077077216936	0.104107756294115	0.753649285594901	0.938570691167124
Merged-chr14-54876897-6	chr14	54876457	54877457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167908, exon 1 of 2)	exon (NM_001167908, exon 1 of 2)	581.0	NM_001167908	105651.0	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	5.05774657669041	4.82203854748611	4.92795675177854	4.79532211898467	4.56110580754098	4.84749048208569	-0.473717764950215	0.235968258687122	0.632279217060081
Merged-chr2-90476860-2	chr2	90476360	90477360	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2314.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.71490626155633	3.76096393575638	3.66286573231849	3.7631569665841	3.75018530906732	3.67963886773459	0.0580475726233975	0.913142537711053	0.980548785332713
Merged-chr1-55525735-2	chr1	55525234	55526234	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	MTC|LTR|ERVL-MaLR	119788.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.68638022345566	6.73452974193479	6.407486777392	5.63609539629909	5.66586294549373	5.98856830474177	-1.46315702594315	9.88010782660957e-07	5.36971921643716e-05
Merged-chr4-135946433-4	chr4	135945942	135946942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-6.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	8.90312099768279	9.05433193902088	8.53514410191009	9.04520650691249	9.09557299378249	8.46960398342052	0.0718800187036092	0.787231973257218	0.948742059742286
Merged-chr12-79612943-4	chr12	79612452	79613452	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311781.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.56107725602268	5.17817484745351	5.17160624962412	5.47501774034611	5.33889380915867	5.2020609581224	0.0460745595710045	0.899437944464733	0.97662115673637
Merged-chr13-90089125-4	chr13	90088625	90089625	+	983.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	483.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	6.44748989617381	6.85139411494143	6.84365910373238	6.78941060545091	7.16665478347773	6.9719341508802	0.410211346778791	0.14212067235186	0.503269265578591
Merged-chr1-74250318-4	chr1	74249835	74250835	+	963.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	13818.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	6.29140401544517	6.22309796425474	6.49734266828489	6.1713436607631	6.63648584522976	6.12504350904894	0.0192871946052148	0.950225995887305	0.988400419899929
Merged-chr12-117476772-4	chr12	117476264	117477264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-39715.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	4.03076878882036	3.77697906159019	3.84683210632051	4.37419586576826	4.63608718950033	4.13166806802196	1.45453547370951	0.00432742427975202	0.0552120779802898
Merged-chr7-102247153-4	chr7	102246648	102247648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	2970.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	6.05446194223629	5.91824390814382	6.55654286635606	6.07782466057736	6.58186480512141	6.66174607367853	0.442367900484965	0.193918226204278	0.581293600619842
Merged-chr17-50588184-4	chr17	50587694	50588694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	78647.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.46638941841074	5.36435853552884	5.74695151768128	5.50893911151011	5.4592628946549	5.4623494129583	-0.0895495517689698	0.79073117462457	0.949584063682145
Merged-chr15-79659083-4	chr15	79658567	79659567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029407)	promoter-TSS (NM_029407)	-111.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	7.15192293255915	7.08761998488071	6.78789518555586	6.97719630507248	6.74551013982344	7.09847905029128	-0.132159684562647	0.618921682623016	0.889524760662882
Merged-chr12-91749012-2	chr12	91748512	91749512	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	B1_Mur4|SINE|Alu	37424.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.33658288162378	7.19336623692155	7.09643289750367	6.87710985828277	7.04891286097724	7.00911251543412	-0.355780619700634	0.143534134962251	0.505745852294686
Merged-chr10-44003137-2	chr10	44002637	44003637	+	720.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	1709.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	6.73302791059885	7.19573756337566	6.90043563503961	7.27770902324723	7.21697765004243	7.35599394959419	0.480968090517358	0.0653716049672021	0.333380761590522
Merged-chr3-153570745-2	chr3	153570245	153571245	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 1 of 4)	MTD|LTR|ERVL-MaLR	154388.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	5.08169947401411	5.56704311004118	5.01772705223112	5.41445362236403	5.57170997781116	5.19454476284804	0.299532813475639	0.442140281516525	0.803105441601984
Merged-chr6-34906286-2	chr6	34905786	34906786	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013366, intron 4 of 14)	B3A|SINE|B2	4545.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	4.93631905298605	4.84469111642947	4.75217061741204	4.33814600996052	4.57963634402625	4.53320299531926	-0.853409580275513	0.0407028434171088	0.251590337019958
Merged-chr2-167944328-3	chr2	167943797	167944797	+	747.099976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	11970.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.69109977612866	5.44355539976	5.3232731215656	5.39239279656173	5.30099588813821	5.35539892151636	-0.301727757347114	0.37973983551553	0.762043995600429
Merged-chr7-16453421-4	chr7	16452948	16453948	+	854.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026938, intron 1 of 2)	intron (NM_026938, intron 1 of 2)	669.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	5.20780883640518	5.11186586259553	5.46815913392352	5.01822650151693	4.91290923943608	5.21127326069076	-0.453404371956035	0.225167246470595	0.620063864646258
Merged-chr12-112615564-2	chr12	112615064	112616064	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198411)	TTS (NM_198411)	-4483.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	2.77130800535608	2.55694083287162	2.79906302104824	2.56144890357022	2.44654887135398	3.0956785027189	0.097868978421915	0.906148739641956	0.978582776260923
Merged-chr1-105747374-4	chr1	105746815	105747815	+	965.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-33408.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.02255670360875	6.308078177073	6.17448011635559	6.21068776762605	6.24568447231134	6.37262212618763	0.165251188631214	0.562512813028512	0.865745518569294
Merged-chr11-118184072-2	chr11	118183572	118184572	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 6 of 12)	intron (NM_001112700, intron 6 of 12)	28670.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.78535805679505	3.71302912263432	3.46121552722825	3.66425173128021	3.66717648262993	3.80559444533761	0.140307586720793	0.801713357610445	0.953080523195889
Merged-chr11-26639084-2	chr11	26638598	26639598	+	731.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-45178.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	5.77792805754094	5.47765960741367	5.65049212321999	6.17048721121972	6.08350627973242	6.14501028685154	0.868351560132502	0.00451531755541128	0.0569613723616079
Merged-chr2-29624136-4	chr2	29623629	29624629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4409.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	8.50571139840028	8.61275438275263	8.10366081398022	8.31677362063027	8.64677242717786	8.1521393486973	-0.0503886719381685	0.844267892617092	0.96373428957366
Merged-chr5-77174962-4	chr5	77174456	77175456	+	989.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36249.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.20715081144354	3.19155654669199	3.25418506530337	3.51229597404381	3.60280439292986	3.75350357801714	1.58188190768715	0.0089466137403082	0.0931701922532622
Merged-chr14-63446106-1	chr14	63445606	63446606	+	692.0	f0_balb.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9712.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	4.51546445834843	4.65297053301803	4.60126214709927	4.52865792267868	4.72425464665073	4.62705306530182	0.101874636814841	0.805728729595591	0.953956034266138
Merged-chr7-75796556-4	chr7	75796023	75797023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51815.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.44630627739138	5.56835972768685	5.5886436006774	5.90616235088056	5.90088219696553	5.78515869602636	0.615534292683184	0.0472879024624338	0.275433047684817
Merged-chr8-122557897-4	chr8	122557398	122558398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6569.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	6.97158715044956	7.25889464272951	7.27858725513583	7.17577756445059	7.56892207720697	7.00935947953632	0.164614111498158	0.55019610784046	0.860631826326949
Merged-chr1-91498808-4	chr1	91498305	91499305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028718, intron 2 of 14)	PB1D10|SINE|Alu	4137.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	4.24242957167013	4.30518767118531	4.19093685189244	4.14187985388208	4.19721576968575	4.0146734305698	-0.34176432764618	0.466789315779026	0.817652165708111
Merged-chr4-45409539-4	chr4	45409039	45410039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-773.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	7.6603463631146	8.24689592884312	7.93324741935524	8.18249147692855	8.58385251155909	8.02773238730985	0.451108267005189	0.100167199114747	0.42207486220387
Merged-chr7-98805057-4	chr7	98804558	98805558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30054.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	6.2697500977716	5.9796297649052	5.6595108226369	5.88774204489239	5.58052161362996	5.34149422121861	-0.666854156993626	0.0642210779323366	0.330164192313492
Merged-chr13-51645667-4	chr13	51645165	51646165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025415, intron 1 of 2)	CpG	433.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	7.33358772875857	7.53470554621304	7.49162868205348	7.55268533648855	7.76754512891546	7.66286363275075	0.307809372988953	0.178525306083637	0.559794804155803
Merged-chr16-87634981-4	chr16	87634520	87635520	+	878.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4B|LTR|ERVK	-63934.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.60814669948316	6.34957345868237	6.36153079881423	6.22981108681134	5.82089167103136	5.86676602909481	-0.775682940644603	0.010861741870127	0.106502924526223
Merged-chr11-11529317-4	chr11	11528722	11529722	+	768.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39956.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.20781748854299	2.8791234688575	3.2093435753265	3.52411391563908	3.19439781502461	3.7032458482626	1.5327103585678	0.0260030502702671	0.191254468919684
Merged-chr17-57363031-4	chr17	57362540	57363540	+	815.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355722, intron 2 of 22)	RLTR22_Mur|LTR|ERVK	4354.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	3.85335605548233	3.92371016896484	4.13140040111526	4.03396168475172	3.91068871154988	3.96701258761886	0.00891698233235813	0.985825602476543	0.996968530237344
Merged-chr19-44284283-4	chr19	44283778	44284778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-9398.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	6.71780506093445	6.37062411879608	6.27449362782714	6.71140680675952	6.74488455745246	6.20340379163657	0.178518132494884	0.565679039001591	0.86688237163883
Merged-chr15-97373378-4	chr15	97372917	97373917	+	960.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-126130.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	7.72608883512144	7.8734748252611	7.54377348602193	8.00170719939457	8.20688683025348	7.66016120165033	0.36812921857525	0.147049734417473	0.511715514631757
Merged-chr13-56177665-2	chr13	56177166	56178166	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168615, intron 1 of 2)	intron (NM_001168615, intron 1 of 2)	1219.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	6.07610260797804	6.29081525820581	6.25964060394068	6.13412974272728	6.45476174190007	6.1749628402846	0.103327802593582	0.723565156738977	0.929080851011554
Merged-chr9-110841586-4	chr9	110841071	110842071	+	837.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153172)	TTS (NM_153172)	-2935.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	4.06209583616336	4.18883224208382	4.49658951221608	4.34742919266769	4.17933814738627	4.31593495509139	0.076346492666485	0.872206810849512	0.970261003150518
Merged-chr19-5407397-4	chr19	5407017	5408017	+	866.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027938, intron 1 of 3)	intron (NR_027938, intron 1 of 3)	702.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	7.02135500330361	6.82236359877731	7.10352008605638	8.64141426619278	9.07623306527641	8.5016372261242	2.56093492766984	1.12241953704799e-23	1.48244896569348e-20
Merged-chr14-54386145-3	chr14	54385647	54386647	+	872.477783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	23325.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.02883315206397	6.34320941737543	6.06348985863014	5.37536213195872	5.14188674222532	5.52356395934145	-1.49516198693813	6.12904670537422e-06	0.000263422375134699
Merged-chr4-109271973-4	chr4	109271477	109272477	+	969.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8298.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.35706289659469	3.45217977260574	3.62348229190249	3.25947432129427	3.4159929409452	3.31916537794426	-0.534797163153753	0.376316575592287	0.759165728116254
Merged-chr15-83172303-4	chr15	83171808	83172808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-100.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	8.8719891752549	9.02478694975144	8.57525980299746	8.64192443568705	8.90222678203039	8.59883729721043	-0.160607178717075	0.48669258496804	0.827985697457807
Merged-chr10-30771293-3	chr10	30770771	30771771	+	613.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32055.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.11104497812366	6.59707111223968	6.37909833214963	6.20798796472912	6.05515677623903	6.13741505072162	-0.413074950360592	0.168362450651066	0.544889256856239
Merged-chr9-96636661-4	chr9	96636119	96637119	+	958.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5116.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	4.52917679436717	4.2346226272633	4.2052974826651	4.36579797256106	4.25846892372987	4.45301404462901	0.0466397381787847	0.919245148544006	0.982007322121577
Merged-chr2-133467930-4	chr2	133467437	133468437	+	945.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84222.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.00045201080563	5.1217866210461	5.24003534885602	4.74484616891494	5.03501762680881	5.11393504360122	-0.311842841270726	0.414731169077904	0.786019635735451
Merged-chr4-62848254-2	chr4	62847754	62848754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-117320.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	4.23582954425804	3.98445159737097	3.93632343522718	4.44265680297245	4.22234057946738	4.20560119846019	0.647049779691532	0.184461536812359	0.568167187813126
Merged-chr18-32165993-2	chr18	32165493	32166493	+	895.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	2904.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	3.48871158295139	3.86408712925375	3.66279726048988	3.79794426874339	3.78715921477432	3.73360324195153	0.29571053224383	0.593316860138647	0.878446784669333
Merged-chr10-128411620-4	chr10	128411104	128412104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-12.0	NR_104288	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	7.48314804340372	7.56422304352683	7.42220412408076	7.56853911928525	7.67390160860561	7.48959748344802	0.131573985820364	0.558171847571696	0.864563721011647
Merged-chr5-142932478-4	chr5	142931963	142932963	+	975.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25709.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.56536342412952	5.39776336282604	5.65711129215618	5.73532889988532	5.84841981582283	6.14985818740326	0.686825050386714	0.0361696787316228	0.233950999916784
Merged-chr8-70631612-4	chr8	70631121	70632121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330687, exon 2 of 3)	5' UTR (NM_001330687, exon 2 of 3)	474.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.02010069249204	5.60289110591674	5.40040069368915	5.9022719706221	5.97790281102868	5.62160557543	0.247359200890557	0.484919439553095	0.827217268924573
Merged-chr4-130816941-3	chr4	130816462	130817462	+	699.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011520, exon 2 of 5)	exon (NM_011520, exon 2 of 5)	24425.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.77101366835029	5.29111178679598	5.39140859747614	5.51624526495287	5.40752595955736	5.20450082402617	0.427330941135885	0.276165402767768	0.673477736428367
Merged-chr3-79842771-4	chr3	79842271	79843271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-109.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	7.8769153288192	8.3303165674203	7.44516753445369	8.00743485762608	8.33419094790576	7.56801657379604	0.101203364435657	0.753067547281591	0.938549578325581
Merged-chr12-51835247-3	chr12	51834766	51835766	+	638.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5730.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	4.25010526928506	4.21127122773238	4.46568993438962	4.33326511440984	4.15061334203047	4.60639930750467	0.156164800789793	0.740293055289965	0.934509856785078
Merged-chr2-170252727-6	chr2	170252194	170253194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103667.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.48589026965226	5.57324243855776	5.46653789170658	5.56954148645619	5.5914812231992	5.40782372944945	0.0383779238510413	0.90625003717667	0.978628664227637
Merged-chr3-108840650-4	chr3	108840182	108841182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011504)	promoter-TSS (NM_011504)	-180.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	6.32581250195973	6.30142756395748	6.3289017189974	6.49046681630343	6.34509188935731	6.56827075731147	0.238688365769263	0.375986213836593	0.758951282467405
Merged-chr2-43784012-4	chr2	43783547	43784547	+	774.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	35223.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	4.04683639096141	4.22365496377613	4.10514739123316	4.1813129738291	4.33913043902637	4.266533362366	0.380508772256854	0.415221230727757	0.786190894237809
Merged-chr11-3428990-3	chr11	3428488	3429488	+	793.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110959, intron 1 of 5)	intron (NR_110959, intron 1 of 5)	-19750.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	3.17634174219557	3.26516171979125	3.37755019615325	3.20999740175829	3.26410084702632	3.39416483729385	0.0683775223816878	0.911603410077532	0.980154516820379
Merged-chr7-19692711-4	chr7	19692227	19693227	+	939.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-68.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	7.50837703357253	7.58219831309708	7.82582484489214	8.05286344608457	8.56412993377684	7.65992944793971	0.731426759449129	0.012585617436005	0.11820489590085
Merged-chr2-128738154-2	chr2	128737645	128738645	+	593.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 3 of 18)	intron (NM_008587, intron 3 of 18)	39230.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.95088283213091	5.02618056117322	4.8854999136631	5.03526198161456	5.06360444971885	5.09432078040687	0.220979926993568	0.547787472648599	0.859445606128575
Merged-chr10-59325586-2	chr10	59325086	59326086	+	589.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	2290.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	4.64943945731545	5.10578493927528	5.15933944044586	5.17142195064076	5.38077402457434	4.90401086626297	0.399887898202993	0.331449756586713	0.722784059178322
Merged-chr17-88540571-3	chr17	88540081	88541081	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 1 of 21)	intron (NM_028658, intron 1 of 21)	10457.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	3.98493567924411	4.20446330723807	4.68936901512369	4.23391416692589	4.12171697965788	4.75334763233576	0.187814770422033	0.725986959734787	0.929743505822386
Merged-chr10-80074337-4	chr10	80073853	80074853	+	767.479187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1086.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	6.91400611759438	6.80992473574955	6.50204227151166	7.1492096920122	7.01083427056635	6.50413314030632	0.254721427282705	0.39514007061875	0.772579826044138
Merged-chr16-11069112-2	chr16	11068612	11069612	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	2814.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	3.85624463954135	3.64432083380202	3.60370189647772	3.688882414955	3.58622584931627	3.92797526426719	0.0773812989519626	0.889454984090277	0.974240173857916
Merged-chr18-9392797-4	chr18	9392294	9393294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026484, intron 1 of 9)	intron (NM_026484, intron 1 of 9)	57360.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	5.08045950726666	5.41648269247027	4.96198080763916	5.23906510549405	4.84830231779833	4.91304548947486	-0.347371741782055	0.384186662005142	0.765357842816299
Merged-chr8-79294965-4	chr8	79294442	79295442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133823)	promoter-TSS (NM_133823)	14.0	NM_133823	109136.0	Mm.26510	NM_133823	ENSMUSG00000037022	Mmaa	2810018E08Rik|AI840684	methylmalonic aciduria (cobalamin deficiency) type A	protein-coding	7.32759117334419	7.63116058079046	7.37546913253729	7.73176822803202	7.67360763824799	7.39939552923519	0.232767577221117	0.341603851427569	0.730935106878357
Merged-chr10-40058827-2	chr10	40058327	40059327	+	811.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-33559.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	3.04375637012169	2.98450002507468	2.99147159596753	2.69916652582332	2.55011904020816	2.94663070609904	-1.43354450797331	0.0612251319463755	0.320807353840933
Merged-chr4-119110294-2	chr4	119109770	119110770	+	962.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	1525.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	3.58558838435982	3.64371113342746	3.77465503041159	4.25600964073152	4.20108294398692	3.79238350733846	1.38754338048185	0.00997853993894708	0.100180302997093
Merged-chr2-26915576-2	chr2	26915076	26916076	+	767.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-845.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	6.91567678695369	7.14852417101624	7.08939622522299	6.87435339737819	6.88510425920072	7.12238432158037	-0.14563489475488	0.561884226287989	0.865592777682614
Merged-chr16-23498854-1	chr16	23498354	23499354	+	608.0	f1_c57bl6.idr	intron (NM_001359083, intron 2 of 10)	MIR3|SINE|MIR	21961.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	4.34975777924467	4.49735622059482	4.4521227650667	4.40750071299683	4.57798725576543	4.7541065349414	0.36652649580006	0.397671545283875	0.774584001029533
Merged-chr14-118700180-4	chr14	118699663	118700663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	MTC|LTR|ERVL-MaLR	6056.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.25566573640502	4.02707919362135	4.28872444083365	4.75532008087972	4.72437945963808	4.76991152775127	1.42364931591895	0.00119140664708383	0.0206520772070223
Merged-chr16-33967473-3	chr16	33966936	33967936	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	-398.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	6.60317653271608	6.76264800523518	6.62582939024655	6.49912230846989	6.48422113309797	6.37922769599984	-0.33472507864849	0.199885471004325	0.588516693369941
Merged-chr15-6242303-4	chr15	6241789	6242789	+	977.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57500.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.61061492606958	4.15779771311042	4.28132995098268	4.25840520311229	4.06410804487609	4.5159425511978	-0.231815016535653	0.63821610001929	0.897399197342002
Merged-chr13-64274817-7	chr13	64274303	64275303	+	970.789124	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172587, exon 1 of 14)	5' UTR (NM_172587, exon 1 of 14)	185.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	6.37099556027075	6.51002351601336	5.71545387638282	5.90305550522397	5.80283537719898	5.46538814699008	-0.879819526839693	0.0153733715991726	0.134990666104763
Merged-chr13-75709229-10	chr13	75708761	75709761	+	865.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	1777.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	3.12691577485504	3.17999164379244	3.08768076471476	3.21654424473211	3.01406967697389	3.16025313655841	-0.0208615418473531	0.974255737231317	0.994260005145451
Merged-chr7-34126047-4	chr7	34125535	34126535	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207212, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	7233.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	4.32170756310073	4.10882509488239	3.90374000676018	3.97510397935792	3.7549547840685	3.81384182474656	-0.843927794195653	0.105133586572435	0.432617351838148
Merged-chr1-153894444-4	chr1	153893955	153894955	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2809.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	3.55661188384315	3.41494353688204	3.48563837072243	3.01954980551891	2.8808139727521	3.34160214666343	-1.73916634889541	0.011698539512406	0.112253151236917
Merged-chr11-72301593-4	chr11	72301110	72302110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037713)	promoter-TSS (NM_001037713)	-19.0	NM_001291153	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	6.330687212445	6.28933483789479	6.04741287815307	6.44852174817037	6.62464793153741	6.30716051081799	0.39100603544339	0.171385342777812	0.549436779112162
Merged-chr4-46490029-2	chr4	46489529	46490529	+	697.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053179, intron 1 of 5)	intron (NM_053179, intron 1 of 5)	700.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	5.19294441600067	5.34435799189791	5.31833929010333	5.05744205790444	4.92707751413138	5.25925658188411	-0.432966169359414	0.232733071318706	0.629027915230523
Merged-chr10-81401891-4	chr10	81401395	81402395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7680.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	8.00625510787008	8.07643473384318	7.55705392815243	7.62353729354677	7.90960235316962	7.53134117338758	-0.289648510961747	0.266355337144598	0.664166899200562
Merged-chr15-78249933-2	chr15	78249433	78250433	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	5122.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	2.95993087385431	3.06463142613551	3.42116236686273	3.09892247981649	2.94751409952597	2.99503972797605	-0.627141155070603	0.363382372501305	0.748998500113665
Merged-chr6-97365282-2	chr6	97364782	97365782	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	PB1D9|SINE|Alu	94004.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.98196962761022	2.76691304880716	3.20767115044157	3.12856685131443	3.08501636538483	3.2238832652171	0.688520982216843	0.321524599099119	0.714904288597718
Merged-chr3-98087059-2	chr3	98086559	98087559	+	936.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	73521.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	4.96325654139272	4.76609328514916	5.05364614896823	4.79334527742635	4.67668101842865	5.01820127776759	-0.225399852004556	0.572229210205485	0.869807909725036
Merged-chr9-77963480-4	chr9	77962970	77963970	+	675.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	46105.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	2.76654429876046	3.04308347972645	2.72909077036723	2.44782744509876	2.29192960386752	2.47353608857442	-3.20668174012588	0.00096831220323997	1
Merged-chr3-138145019-5	chr3	138144334	138145334	+	974.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001348197, intron 1 of 8)	intron (NM_001348197, intron 1 of 8)	1035.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	7.12243628322354	7.43229699825186	6.88435548376271	7.33094592038424	7.81961968723268	6.81379901636071	0.336063838802115	0.31479891968121	0.709090105815759
Merged-chr7-116460580-2	chr7	116460080	116461080	+	711.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17122.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	3.80659540307237	4.03928275691093	3.94527651384853	3.77708621077332	3.76723252578267	4.0602756975971	-0.211308090562697	0.685457922892805	0.916264475254709
Merged-chr8-80948933-2	chr8	80948446	80949446	+	1000.0	f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	65960.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	7.44915513136603	7.09811770252315	7.38401182764593	7.38750209370195	7.23913610788204	7.05949994489182	-0.114426550521633	0.652211440333321	0.902896807825606
Merged-chr2-148440051-4	chr2	148439554	148440554	+	909.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010740, exon 2 of 2)	3' UTR (NM_010740, exon 2 of 2)	3481.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	3.06819830020743	3.03937643644008	3.021749335761	2.79148490292232	2.97302165949866	2.97488519850736	-0.599796433993498	0.382120751154995	0.76380089031673
Merged-chr3-51789015-4	chr3	51788534	51789534	+	848.1845089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	127855.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.19909925377864	5.41605993811682	5.63707117622165	4.73283785357316	5.20872184947633	4.98076342653213	-0.862244366207842	0.0298946001044587	0.208470676831117
Merged-chr5-64229739-2	chr5	64229239	64230239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-618.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.68141758039876	7.83771987838083	7.69263013435525	7.62190765261002	7.82583987724051	7.4548494297978	-0.128681972029179	0.583336918433765	0.87400013033251
Merged-chr10-115248068-3	chr10	115247617	115248617	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025706, intron 1 of 16)	MTD|LTR|ERVL-MaLR	3376.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	2.73100246902219	3.16600785564053	3.21808528188668	2.59237442158634	2.6146471988897	2.95707946688973	-1.65577520977377	0.0402821532305205	0.250003535914459
Merged-chr16-10489269-4	chr16	10488782	10489782	+	975.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-499.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.24638352519109	5.39057313339564	5.72937781921935	5.85466684762146	5.98127646721804	6.06495379121965	0.935498565415293	0.00476914005119057	0.0592726819088074
Merged-chr4-41361235-4	chr4	41360731	41361731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	9268.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	6.04391337016457	6.06775505043451	6.06766598931964	6.00254086625769	5.93122623406687	5.79123247390463	-0.247852665668424	0.396456399994683	0.773652887901204
Merged-chr11-110448736-7	chr11	110448255	110449255	+	943.3952640000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-29760.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.83165448251477	5.7201447640222	5.65823857120222	6.31637412699641	6.11333774534842	6.11721984466783	0.770594670597832	0.00986564367535163	0.099503088356201
Merged-chr10-128551705-2	chr10	128551212	128552212	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B1|LTR|ERVL	-2544.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	2.09716425864201	2.12630479575279	2.2308807488098	1.84530300992886	1.89524205000932	2.11169270461083	-1.66791410708564	0.097636736602179	1
Merged-chr4-133631612-4	chr4	133631098	133632098	+	808.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1831.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	6.6438884147347	7.00184801538948	6.92413543261948	6.56346547652891	6.72561911775764	6.5284485878832	-0.390906679151239	0.146712517036363	0.510992979414413
Merged-chr10-80674849-5	chr10	80674377	80675377	+	926.957153	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	1416.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	4.43942841765369	4.1416418709288	4.14552645863008	4.30975198008476	4.46934304556088	4.00941271398161	0.0908806882661888	0.853964152969714	0.965878769929691
Merged-chr9-108726287-4	chr9	108725772	108726772	+	851.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 4 of 10)	L1MA5|LINE|L1	34129.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	3.35489544403291	3.00840921052868	3.13576332256188	3.12687751772664	3.05349509358832	3.02687333694591	-0.46236334760889	0.488537165176899	0.829274371979016
Merged-chr7-118344961-2	chr7	118344461	118345461	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19A|LTR|ERVK	98599.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	2.37799368605138	2.27009624716621	2.7551636177074	2.24524143622643	2.2649470600668	2.40848165518443	-1.09843418427372	0.211000899920861	1
Merged-chr16-78236963-4	chr16	78236462	78237462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18492.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	7.33547624000838	7.42039130234486	6.69882818645619	7.06497370703759	7.45584026691676	6.55252711138459	-0.162638401988932	0.637823010667528	0.8973803061326
Merged-chr11-51911708-4	chr11	51911225	51912225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-54095.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.80571345873668	5.68285840063744	5.73321594627568	5.495998539305	5.7294301391589	5.86854660167648	-0.0720148656400523	0.82177417285926	0.958023303204974
Merged-chr5-43234601-6	chr5	43234151	43235151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	703.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	6.8032527944165	6.56328064029768	6.88238248650929	6.98070631592507	6.47568895421817	7.08335717864376	0.174473449081549	0.55607594003485	0.86357390983939
Merged-chr17-81380076-3	chr17	81379585	81380585	+	809.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104580, exon 9 of 9)	non-coding (NR_104580, exon 9 of 9)	-315000.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	2.51334344109141	2.4105601223161	2.59309235692424	2.56072504179663	2.39700624766137	2.34148681246514	-0.411778190455426	0.613692807540425	1
Merged-chr7-12961919-4	chr7	12961432	12962432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3906.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	7.54233322209028	8.03685111517064	7.54276434251511	7.74250952189303	7.94142883603927	7.63885068437923	0.0702534273762873	0.787634603047606	0.94877064431094
Merged-chr14-14120969-4	chr14	14120486	14121486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025550)	promoter-TSS (NM_025550)	-82.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	6.88084929430392	7.19472403304763	6.80840449658245	6.78821040435303	6.66994757957112	6.86692319100084	-0.32173416028594	0.223958203002585	0.618716230799134
Merged-chr11-113777969-3	chr11	113777468	113778468	+	771.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-26153.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.18315052088144	2.94416253655325	3.14803862320797	3.38814552479703	3.18791481261846	3.38988396998679	0.958637466861692	0.139906223949109	0.499868788359785
Merged-chr11-117989177-2	chr11	117988677	117989677	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	B3A|SINE|B2	2320.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	4.76316561045792	4.43373790973643	4.71067826618725	4.79282513667143	4.54632402906228	4.6988056268171	0.0914307591375935	0.828900486939789	0.959925957873127
Merged-chr5-102032942-4	chr5	102032444	102033444	+	900.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36977.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.30425912593556	7.3975238634527	7.59182310097273	7.40844240465394	7.4835667418867	7.41279131517093	0.00972680716026945	0.9665492852274	0.992333155556122
Merged-chr11-17166834-4	chr11	17166334	17167334	+	827.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	7536.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	4.18319920682151	4.17202472339502	3.88410858369537	3.93627555096761	3.96345047300677	4.0058807001955	-0.378059357813452	0.448091356923476	0.807047460483746
Merged-chr5-34520548-2	chr5	34520048	34521048	+	841.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5236.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	3.1886472776969	2.88512586551302	3.09215616742251	2.98819937220307	2.88616618671908	2.92483539504498	-0.597919267123668	0.386208889979033	0.766979386557564
Merged-chr13-47245019-2	chr13	47244519	47245519	+	910.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001170643, exon 8 of 8)	3' UTR (NM_001170643, exon 8 of 8)	51016.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.86555728343544	2.88489709506676	2.83221402600968	2.49395931152572	2.40728527158618	2.59210641120714	-2.29987648729635	0.00582253661425087	1
Merged-chr6-28410211-3	chr6	28409697	28410697	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	11527.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	2.39485433133386	2.65466769507133	2.35625492014179	2.53578424340947	2.38857964533854	2.62408067976815	0.218509758450061	0.793201452285606	1
Merged-chr4-132783605-3	chr4	132783105	132784105	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12759.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	5.93117683669995	5.90125381925113	5.60333005308879	6.11861117571806	6.3689554182047	5.88959690396905	0.558571545556443	0.0830589573625011	0.381326954547506
Merged-chr15-25269844-4	chr15	25269350	25270350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143914.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.78532417325615	7.83974346757638	7.35588085348916	7.352763705697	7.7271736660388	7.12530815871333	-0.359429618201896	0.203175571159191	0.593047970473348
Merged-chr3-67584482-2	chr3	67583982	67584982	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025813, intron 1 of 15)	intron (NM_025813, intron 1 of 15)	1714.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	3.48543829987084	3.44627607616742	3.38385866365331	3.1872881610493	3.51343085179559	3.56289062305169	-0.035822464089852	0.953095908413933	0.989359300570295
Merged-chr6-146172444-4	chr6	146171918	146172918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 50 of 56)	intron (NM_019923, intron 50 of 56)	238296.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	5.08544975724187	5.25400742630093	5.36068125076915	5.26003239566537	5.50976865105688	5.42362044836383	0.345678457983983	0.323877146978887	0.717120257969349
Merged-chr3-20295123-4	chr3	20294626	20295626	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19393.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	4.75590182157366	5.15263560474085	5.17552183063568	4.90159613441654	4.93305680943302	4.97259575659518	-0.221833400892383	0.570857339172998	0.869268752259116
Merged-chr8-126943104-2	chr8	126942604	126943604	+	543.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	2817.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	2.3042494570841	2.67863009720452	2.34379938199988	2.57377153065052	2.31551929910259	2.67904282419981	0.427827362931957	0.625612254670985	1
Merged-chr14-70153641-6	chr14	70153125	70154125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001004155)	TTS (NM_001004155)	166.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	5.48445521052024	5.33191796525018	5.72501424620155	5.26491907933966	5.41064038843844	5.52804615288325	-0.214751071176521	0.53586923381462	0.853668337370661
Merged-chr6-87042753-4	chr6	87042262	87043262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013528)	promoter-TSS (NM_013528)	-84.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	7.80950466668474	7.85438330726189	7.54861464172289	7.51221379118807	7.53691417354541	7.22512289215337	-0.450791478381778	0.0622194886762139	0.324099111917516
Merged-chr7-105629716-1	chr7	105629216	105630216	+	1000.0	f1_c57bl6.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	3855.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	3.94651888889853	3.80028067965661	4.09047435950721	4.01327559414919	4.12528198546525	4.24649882543149	0.544813106735853	0.272213948812475	0.669543037120097
Merged-chr6-137410680-4	chr6	137410168	137411168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-53.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	7.26858398815007	6.8325040073717	6.73483067315595	7.02157844994167	6.77942126995566	7.13098801524288	0.00660922415003995	0.981495122511104	0.995717195177154
Merged-chr1-66818274-2	chr1	66817749	66818749	+	915.166626	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	-654.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	6.8123481725384	6.88371531378823	6.62514276095199	6.90981489082364	6.94306790601194	6.66720252802773	0.105746593988081	0.684602284733924	0.915930759709583
Merged-chr2-165287006-3	chr2	165286521	165287521	+	786.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	766.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	6.73881147930271	6.78350524168186	6.63172819641915	6.66217065356888	6.88797822878379	6.72351846323332	0.0672813664447724	0.79297274787245	0.950155903474372
Merged-chr2-128124681-4	chr2	128124147	128125147	+	916.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028765)	TTS (NM_028765)	-1391.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.87687599819537	3.86729832697114	3.67796636504845	3.99234501123929	3.58356426670203	3.90597080180342	0.0571428963075505	0.917049222916818	0.981520635663402
Merged-chr12-35889982-2	chr12	35889487	35890487	+	626.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-35634.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	4.49803246404234	4.68724570676214	4.69052717805078	4.27982232848283	4.60549056055064	4.2887357908747	-0.526218109628051	0.240806086228206	0.637816101317097
Merged-chr4-127148033-4	chr4	127147554	127148554	+	954.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21150.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	3.69893225730029	3.66328283235844	4.14150094439059	3.78406336750573	3.83477338479832	4.3677345583138	0.512079278960632	0.372050586427514	0.755997445123458
Merged-chr14-73239521-2	chr14	73239021	73240021	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1630.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	7.53059029124397	7.67202586467162	7.40728640171093	7.75040420430543	7.98532503691755	7.54892321002416	0.341821777930496	0.162217406824912	0.535591771804088
Merged-chr19-5692098-5	chr19	5691473	5692473	+	917.6611330000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	2842.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	6.18808971883029	6.20426542979121	6.68078222672711	6.17388352329385	6.42028212358355	6.70918530205743	0.130286381328075	0.682531282774321	0.915100674772977
Merged-chr2-118746788-1	chr2	118746288	118747288	+	548.0	f0_c57.idr	3' UTR (NM_001301269, exon 1 of 1)	3' UTR (NM_001301269, exon 1 of 1)	1030.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	3.25818710171814	3.45462350053555	3.22976663332603	3.39253995963279	3.00014830829999	3.52285420346361	-0.00733063044902917	0.991212271973267	0.998206241771275
Merged-chr5-73558262-2	chr5	73557762	73558762	+	589.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153313, exon 10 of 10)	non-coding (NR_153313, exon 10 of 10)	67236.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	3.08694010883444	3.49445219764061	3.20317125564667	3.23172084933186	3.1617903871402	3.03008170379491	-0.544565693400389	0.415684076827686	0.78656116488557
Merged-chr13-60709756-2	chr13	60709256	60710256	+	564.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	76608.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.50878944532982	4.52196144723664	4.62831156581906	3.99665019978614	3.67355022117042	4.10256272460156	-1.79249217925185	0.000340098564954909	0.00772772293631022
Merged-chr2-128717623-3	chr2	128717135	128718135	+	729.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	18720.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.82097545640026	6.11408000589538	6.5413943024656	6.28591107685248	6.02222143636255	6.18721828850903	-0.0257868658575887	0.937993779645978	0.986246463939529
Merged-chr15-60835154-4	chr15	60834683	60835683	+	812.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-10103.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	2.96278076390467	3.48117513316072	3.33694075553914	3.21211486094591	3.08187647457417	3.29762494846778	-0.340258532601653	0.614839870164955	0.887639829057119
Merged-chr17-17839660-2	chr17	17839150	17840150	+	584.0	f0_balb.idr|f1_c57bl6.idr	TTS (NM_001162909)	TTS (NM_001162909)	8675.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	3.5081214897013	3.2725515072056	3.38487894577319	3.25992220888558	3.15477434818044	3.16716370485122	-0.808094174538789	0.195726419689735	0.583438527663774
Merged-chr17-80776040-4	chr17	80775532	80776532	+	798.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48007.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.75224841846022	4.87000097727396	4.69963700903475	4.99679334555891	5.1107982438116	4.95913440848987	0.549247903460735	0.151526111804981	0.518952882025607
Merged-chr16-15863397-4	chr16	15862910	15863910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029354)	promoter-TSS (NM_029354)	-41.0	NM_001359003	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	6.67625061488571	6.85746072972786	6.78354172741882	6.74572322981745	6.91388424134789	6.84200126230723	0.0986838070524486	0.69500779460643	0.919230570201314
Merged-chr2-57117757-4	chr2	57117249	57118249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-2711.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	3.95089992466488	3.38534072151259	3.74902325219874	3.8480168195028	3.59426981894494	3.66104895942143	-0.0423550117951193	0.942951581532197	0.987217876821358
Merged-chr7-51879362-3	chr7	51878849	51879849	+	957.1904910000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008087, exon 1 of 8)	5' UTR (NM_008087, exon 1 of 8)	382.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	2.63503793520328	2.56486328503468	2.65852833571885	3.25984574347988	2.90571652616764	3.11109326092038	2.62001782923465	0.00103770598001593	0.0185290642028253
Merged-chr4-156200876-4	chr4	156200392	156201392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-74.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	7.6614465426003	7.89506745713331	7.41285652806651	7.77028104135899	8.18853165536287	7.65605246514022	0.31899314015391	0.236996187797714	0.633436049796627
Merged-chr8-121580201-4	chr8	121579702	121580702	+	867.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1396.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	4.5088483150932	4.58467665280968	4.33318023198611	4.34947996266364	4.3762859999541	4.61152532152736	-0.11201675243711	0.799379962575858	0.952248176414355
Merged-chr14-20394721-2	chr14	20394221	20395221	+	796.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_029698, intron 27 of 28)	intron (NM_029698, intron 27 of 28)	-1087.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	2.82179697823235	2.62202217353999	2.85252543469469	2.76848408669341	2.83985075165285	2.74095045918907	0.103336008946317	0.887593894673456	0.973836995667151
Merged-chr9-66975423-4	chr9	66974924	66975924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030717)	promoter-TSS (NM_030717)	60.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	7.68609620106383	7.70682952319007	7.25891660963603	7.38097059040066	7.23562518005324	7.42924712730115	-0.33562820700907	0.180684684005375	0.562665089323325
Merged-chr18-31804107-4	chr18	31803625	31804625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170966)	promoter-TSS (NM_001170966)	68.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	7.65573330492165	8.26525654519319	7.60439371662491	7.4336709796474	7.53601101548581	7.3201106970306	-0.650855612138061	0.018967596279183	0.155948459863662
Merged-chr5-24038401-4	chr5	24037892	24038892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7702.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	6.06389005825094	5.77176516554237	6.11112764119084	6.14560098823498	6.04359246889762	6.06330208255465	0.173612276407924	0.562188768781306	0.86560636450104
Merged-chr11-69100638-2	chr11	69100138	69101138	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011065, exon 2 of 23)	5' UTR (NM_011065, exon 2 of 23)	486.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	5.77827896789064	5.42310603766144	4.98680930148675	5.51388608197621	6.00043983373681	5.13624508414739	0.310996870999257	0.480383673257878	0.824543506620807
Merged-chr16-57231583-4	chr16	57231075	57232075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358433)	promoter-TSS (NM_001358433)	-109.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	7.6110591728115	7.60560087555151	7.48065377077162	7.60738067123963	7.81642388724406	7.38638519752367	0.0799447459794265	0.739361318961781	0.934213727972483
Merged-chr11-16977737-3	chr11	16977235	16978235	+	831.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 9 of 9)	ORR1G|LTR|ERVL-MaLR	26325.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.72569086811773	5.79592846158307	5.49465685963247	5.29262691517944	5.2774933623689	5.49924336417398	-0.640083118717727	0.055935097887353	0.304457880879889
Merged-chr9-114805338-4	chr9	114804816	114805816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-23323.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.4181969220222	5.48783618477873	5.03160905949785	5.48158763387833	5.31245686678151	4.85384431602436	-0.167893117604417	0.675703532664368	0.912283739388921
Merged-chr11-105421462-2	chr11	105420962	105421962	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35273.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	6.627485246714	6.33673709132091	6.45996305042604	6.20949077632755	6.23754306098579	6.02722717764111	-0.518782793263571	0.0681754732225679	0.341651895496422
Merged-chr8-22411355-4	chr8	22410856	22411856	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020560)	promoter-TSS (NM_020560)	16.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	5.00300455497892	5.32648040119302	5.26840656648037	5.3140199765928	4.936654681541	5.03107299887211	-0.212995458913695	0.575882195590203	0.87142885060749
Merged-chr7-130812589-4	chr7	130812122	130813122	+	920.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081038, intron 10 of 15)	intron (NM_001081038, intron 10 of 15)	38553.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	2.76890797001796	2.97838402147526	2.89083154221209	3.08882623004659	2.98747438965892	3.0842163520172	0.797443834013435	0.247380971449923	0.644265503899033
Merged-chr18-83983301-2	chr18	83982801	83983801	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103261.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	3.54852904006347	3.86383256728526	3.61621145034859	4.36219438150835	4.66598986466003	3.8724138670127	1.95051731941284	0.000846294307331465	0.0158066120593573
Merged-chr14-26491291-4	chr14	26490732	26491732	+	858.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	43392.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	2.35245235025177	2.17850017339568	2.26693357252104	2.43173731366861	2.17895834462596	2.4725031891613	0.62987655440036	0.467564798327769	1
Merged-chr6-124746306-2	chr6	124745806	124746806	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007881, exon 5 of 10)	exon (NM_007881, exon 5 of 10)	-5227.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	6.89564440453378	6.91622845043993	6.11759087409435	6.42948001080761	6.65674478597453	6.33705446783472	-0.346148737250119	0.295513896722594	0.69243671872078
Merged-chr4-99929890-4	chr4	99929375	99930375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028132, intron 1 of 10)	CpG	424.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	6.51734760603114	6.83296192975534	6.80079728986762	6.83965996295221	6.60346432325127	6.35811124186709	-0.15862501130267	0.578234439265687	0.87240568986712
Merged-chr11-90558832-3	chr11	90558312	90559312	+	830.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011505, intron 12 of 17)	intron (NM_011505, intron 12 of 17)	79296.0	NM_011505	20913.0	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	2.56141961402476	2.60649207499945	2.70170422857599	2.52015556448778	2.38604439908344	2.39213121880789	-1.1503170381095	0.154530157950866	1
Merged-chr9-60600525-2	chr9	60600025	60601025	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311095, intron 13 of 15)	intron (NM_001311095, intron 13 of 15)	-54643.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	3.08067566208822	2.94282819284275	3.14012379402199	2.68950821342932	2.80221569387906	2.86241106604447	-1.34285394091767	0.0627548370371576	0.325745756717892
Merged-chr12-102367311-4	chr12	102366864	102367864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	72449.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.51734342262286	7.93523142846714	7.84695211643928	7.5962551357681	7.87348057916775	7.18504870907052	-0.26724130314674	0.341951418684226	0.731142095278512
Merged-chr14-19904180-4	chr14	19903697	19904697	+	922.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	65272.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	4.60634565690899	4.55916657128731	4.5737155076849	4.33768454354109	4.28249022668146	4.29464071641127	-0.705464191274802	0.101904076432284	0.425800000330024
Merged-chr6-115321546-4	chr6	115321031	115322031	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-39420.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.61206223095763	5.86289542869076	5.83896287257777	5.4809668318638	5.83151500370455	5.49643645187689	-0.269830003540186	0.420042978106833	0.789438387352498
Merged-chr15-25370417-4	chr15	25369914	25370914	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	43350.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.60923887146082	4.5151595386983	4.49575232083073	4.57883161261372	4.37021237588624	4.47729738496383	-0.171479287176844	0.687530355960812	0.917163788391121
Merged-chr16-55731073-3	chr16	55730593	55731593	+	802.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91045.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.32954256467379	5.61194556666841	5.21061589972263	4.94591393202162	5.21571006294513	4.95045206171852	-0.70742112658006	0.0610163370161221	0.320078834851767
Merged-chr6-125351083-2	chr6	125350586	125351586	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1363.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	7.71867327643249	7.69810414845531	7.67412868807757	8.29273235000722	8.28922443037921	8.28743506039118	0.840209203891243	4.48332070185661e-05	0.00144201062605367
Merged-chr11-4704632-3	chr11	4704135	4705135	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	-21.0	NM_001356391	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	5.6334279320655	5.86804610863466	5.85723693397492	6.25689245080919	6.19375539056613	6.06062598623782	0.676981274159951	0.023195573987744	0.178164619253411
Merged-chr3-123333303-4	chr3	123332796	123333796	+	980.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	52694.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	5.54045166040991	5.87329835440973	5.946116704672	6.43479569902711	6.40815442635138	6.18623805931141	0.962496512576423	0.00165262010481568	0.0266768569542263
Merged-chr7-16928487-4	chr7	16927983	16928983	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4451.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	3.59646410437005	3.81316807608419	3.97556423082596	3.98277990414399	4.14299539976188	4.13624390315538	0.897281802834772	0.0840451828778778	0.383661081936741
Merged-chr17-24739522-2	chr17	24739007	24740007	+	946.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001346668, exon 2 of 4)	exon (NM_001346668, exon 2 of 4)	2914.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	3.27172617703367	3.095718216065	3.36130086759986	3.2445743931612	3.36324803602733	3.63658765130835	0.694382739063508	0.270872262473849	0.667992626653745
Merged-chr7-115084887-4	chr7	115084374	115085374	+	995.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	133600.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.55142493665989	3.69361627864914	3.72494497534571	3.3492381053792	3.09937524096623	3.0536127779024	-1.9365125507377	0.00325913895449095	0.0448316141718107
Merged-chr4-40174459-4	chr4	40173968	40174968	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 4 of 20)	intron (NM_007386, intron 4 of 20)	31203.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.78067875247437	3.73007092797211	3.45588525532938	3.83024823707687	3.55975052159682	3.6986316824406	0.0927821091009815	0.87038708325862	0.970065609722504
Merged-chr13-93243281-4	chr13	93242790	93243790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-50873.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.12415152666549	5.82852596125699	6.06948343697022	6.55142022123752	6.56755118410983	6.26053462360776	0.77605163865148	0.00797381926303323	0.085899217146358
Merged-chr15-73061883-2	chr15	73061383	73062383	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	-679.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	4.26560669099871	4.37442272121962	4.79414310848923	4.93823779568042	4.65391206339689	4.99564532304553	0.897770567807915	0.0441250082540117	0.264311690072695
Merged-chr14-26636485-2	chr14	26635985	26636985	+	856.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1649.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	5.84417282099627	5.80486158617195	5.88746338578046	5.89993863499167	6.24990951001398	6.25144407674107	0.52294730004263	0.0841060592696853	0.383747675208323
Merged-chr13-8867558-4	chr13	8867064	8868064	+	776.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	URR1B|DNA|hAT-Charlie	3480.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.37420130734333	5.28963378602613	5.1804321801771	5.59894212607816	6.11486827990362	5.68035071275482	1.01561965917467	0.00401332648317839	0.0520481405879532
Merged-chr15-98145132-2	chr15	98144632	98145632	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	570.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	5.76840838918091	5.94957440680848	5.99228675187807	5.98681864460386	5.92547059646854	5.86395925172906	0.0457766997915068	0.878375622809049	0.971848664619312
Merged-chr5-24046666-5	chr5	24046078	24047078	+	854.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15888.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.90919417923772	6.1246603795441	6.14746333457776	6.10756445523719	6.1108379548402	6.00988838514357	0.0336402416919681	0.907894856405697	0.979069714243211
Merged-chr2-102914338-3	chr2	102913879	102914879	+	862.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12714.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.64473049086842	2.67935687111248	2.62510207621936	2.9309093618063	2.82421574522101	3.17778858976693	1.70594319628732	0.0242241314010215	0.18322659370205
Merged-chr15-86224302-2	chr15	86223802	86224802	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	9843.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.17159080569181	6.51233456464008	6.53564147359501	6.0887482065492	6.1577401376479	6.09670039327025	-0.492912371900354	0.0892393070359683	0.396826862967553
Merged-chr3-132171753-4	chr3	132171247	132172247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	MER121|DNA|TcMar?	86455.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.96993286238624	4.36435292478844	4.48761889223654	3.85309619790276	3.60589683152326	4.18973742496292	-1.14202677417877	0.0394848514883671	0.24684113618663
Merged-chr10-94372497-2	chr10	94371997	94372997	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	MIRb|SINE|MIR	60548.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.81439260037139	6.49180460727477	6.23807098791016	6.54055482103202	6.65703729515788	6.06605362037277	-0.140358749392051	0.664959189273073	0.907721942545399
Merged-chr5-20955306-3	chr5	20954822	20955822	+	572.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	-3500.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	3.41822339564649	3.40867921055579	3.25157469460856	3.42891902919471	3.51794993124514	3.4406134128981	0.373996034952747	0.528525310247922	0.850579927956001
Merged-chr11-116099763-3	chr11	116099121	116100121	+	693.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10614.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	3.50358278103679	3.57338111532702	3.52449103110846	3.57637088018497	3.69577047301452	3.80209374552307	0.545977942518087	0.325090311132742	0.717970213571373
Merged-chr12-102365270-4	chr12	102364767	102365767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	74546.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.92631221299775	7.25932689123458	6.97318905862087	6.69569373672413	6.99264467416256	6.96265695678489	-0.269097595132436	0.309097461831977	0.704802606494279
Merged-chr15-59481919-3	chr15	59481417	59482417	+	965.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107719.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.60721085937369	4.79666496675936	4.91861430573513	4.39892616903191	4.29457448871274	4.57942773588677	-0.868361782962549	0.0434957820216541	0.262064280351023
Merged-chr5-74795008-3	chr5	74794534	74795534	+	700.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92131.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	2.96564561191938	2.60120847715803	2.76645652721999	2.53774689993635	2.43088348505548	2.71690446831808	-1.28096254190204	0.112725176960045	0.448425976142792
Merged-chr12-69295252-2	chr12	69294752	69295752	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-1429.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	2.78328349923382	2.97851038486921	2.89399996701515	2.90991782512088	2.66584575250915	3.13920590614321	0.121426489878566	0.869243028869709	0.969788171765313
Merged-chr8-72420977-4	chr8	72420472	72421472	+	939.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122832, intron 1 of 15)	CpG	502.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	6.30865897465144	6.58483520400744	6.42133898480795	6.15281912884895	6.1213012330041	6.49829234144524	-0.309604529024194	0.2879366753545	0.685252288160501
Merged-chr3-26991223-4	chr3	26990714	26991714	+	967.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162640.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	3.93632282057215	4.01050944363159	4.21055266106923	4.21159519292948	4.22258035812629	4.27789906307601	0.530176942506442	0.263985488816572	0.661879105198449
Merged-chr2-145827321-6	chr2	145826816	145827816	+	781.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	B1F|SINE|Alu	41200.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.25112710106877	6.1958719758096	6.54559047771883	6.06950185236345	6.55229152364271	6.7858584243314	0.270801376854809	0.399185995387147	0.775712434823128
Merged-chr3-96601530-3	chr3	96601036	96602036	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163170, intron 1 of 5)	intron (NM_001163170, intron 1 of 5)	403.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	4.8830631960393	4.57120354949712	4.71967195060039	4.97816911841058	4.29583391704203	4.58209532719468	-0.192932642736028	0.67607373881262	0.912421384593547
Merged-chr4-66830581-5	chr4	66829974	66830974	+	832.34668	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021297, intron 1 of 2)	Lx2|LINE|L1	2923.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.5301864624525	5.56286621244328	5.584883459471	5.15627418029752	5.29321564718614	5.42199409602441	-0.521851485072231	0.11959996270542	0.462223580900723
Merged-chr9-45093023-3	chr9	45092542	45093542	+	774.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005421, intron 5 of 10)	intron (NM_001005421, intron 5 of 10)	13859.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	4.79155913539934	5.01851371486202	5.20444911068826	3.70768306213263	3.31220252879633	3.91354937989188	-4.35706412295816	3.32257858858503e-05	0.0011224730783556
Merged-chr5-32133184-4	chr5	32132694	32133694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3278.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.61810321967742	5.39261735919852	5.89184926347561	5.53964790560065	5.28796435591369	5.66697022910235	-0.267734793742559	0.450631660627915	0.808443910792592
Merged-chr19-46505466-8	chr19	46504950	46505950	+	923.6875	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	3802.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.90176059249866	6.75528802028808	6.9985498666792	7.15380203440367	7.18123110498416	6.5889736912142	0.198121512828643	0.485329755853146	0.827436882501367
Merged-chr15-36716105-8	chr15	36715608	36716608	+	989.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74824.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	5.72254785804007	5.64565561550886	5.27049287345724	6.16071309206592	6.05328157593584	5.82454555902084	0.805187161853288	0.0162215661529185	0.140132568664996
Merged-chr12-36364523-4	chr12	36364025	36365025	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16925.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	3.83333412855915	3.8905450517014	3.93566606824297	4.40189887512031	4.13338175729484	3.95480396328385	0.869536500292228	0.0851309450552728	0.386252608791229
Merged-chr6-129397005-4	chr6	129396492	129397492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-305.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	7.43602696335166	7.30104908059056	7.19594047081762	7.46939683575059	7.68541030425918	7.35979563865689	0.294702829036614	0.222446517779002	0.617420572917785
Merged-chr6-124311696-3	chr6	124311188	124312188	+	848.788879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053094, exon 5 of 17)	exon (NM_053094, exon 5 of 17)	7037.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	4.44924815452188	4.48722686290525	4.69599315052206	4.46700166636228	4.1196459075383	4.5309755179589	-0.42761599167561	0.348809086587742	0.736698390151353
Merged-chr3-137852593-1	chr3	137852093	137853093	+	1000.0	f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-11894.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	4.28100365322016	3.94583802515347	4.31590327932606	4.25024069851246	3.97986239264738	3.90953689228905	-0.367675687334377	0.46931040313976	0.818943090863774
Merged-chr3-87525587-4	chr3	87525055	87526055	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012051)	promoter-TSS (NM_012051)	-23.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	8.17187344593663	8.35721074831881	8.11299693129862	7.72575477516643	8.01166209198424	7.97488292180593	-0.438858780181721	0.0512581674713434	0.288513129875908
Merged-chr11-89019575-3	chr11	89019087	89020087	+	788.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20184.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	4.44570992567539	4.54975877238395	5.15362810920413	4.81456922116828	4.37974883053906	5.32643827350992	0.319640026583486	0.533517785379932	0.852484319020423
Merged-chr4-155568273-4	chr4	155567761	155568761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	B1_Mur1|SINE|Alu	4446.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	5.10613800502969	5.1265410761879	4.39734668481544	4.80837694096205	5.29206670891995	4.99250802268429	0.263193700235542	0.571650692637569	0.869547320544841
Merged-chr2-68434716-4	chr2	68434213	68435213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	37268.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	5.84754768918476	5.71339877256497	5.42163985071794	6.1143103060133	6.45858648078285	5.64694000814456	0.783899311152817	0.0321200007066791	0.217632745575798
Merged-chr9-44231150-4	chr9	44230631	44231631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	2915.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.53434350540526	5.77105937565205	5.66175482727852	6.06671229917594	6.360646280652	6.05026431619924	0.905725998451068	0.00358452082042225	0.0480291156885177
Merged-chr4-53030257-2	chr4	53029757	53030757	+	879.333374	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013454)	TTS (NM_013454)	18377.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.76187066447532	2.98244828345532	3.2412057675397	2.7750690723018	2.80615201039145	3.25946381494231	-0.201750356362601	0.789359275512442	0.94921167421876
Merged-chr6-108696055-4	chr6	108695559	108696559	+	958.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35125.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.58345942208126	3.60589545015019	3.43656200332878	3.45408991468836	3.39500989389346	3.50782725218089	-0.368902685598446	0.521668401999142	0.847183372504239
Merged-chr2-117019340-4	chr2	117018822	117019822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101749.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	7.23933432053158	7.34678468229416	7.3586076803259	7.28242518283025	7.71898466269428	7.32687997883195	0.225849669254939	0.370802020183293	0.755054550130175
Merged-chr11-80087026-4	chr11	80086550	80087550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2350.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	5.13233180882648	4.69328801871332	4.93039004319079	5.00754704238973	5.17933004651986	5.59443533568164	0.714681121332444	0.0817409167655334	0.37821821732895
Merged-chr2-19388905-4	chr2	19388405	19389405	+	920.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029619, intron 3 of 4)	intron (NM_029619, intron 3 of 4)	17269.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	5.02340337759247	5.46599365327622	5.24868773264564	4.83624852844892	4.74922898067346	5.01607241998874	-0.84935542964127	0.0289241238842685	0.204062955753961
Merged-chr11-70657000-2	chr11	70656500	70657500	+	828.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-176.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	5.38946023207747	5.22438489387003	5.5142466846833	5.4181215523141	5.42884055620819	5.37301330978057	0.0707450575521942	0.834854954357664	0.96138272464184
Merged-chr3-105914265-1	chr3	105913765	105914765	+	731.0	f0_balb.idr	exon (NM_027025, exon 2 of 7)	exon (NM_027025, exon 2 of 7)	9844.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	3.39452529266922	3.33223783832802	3.341383012073	3.27004117188023	3.18904553713257	3.29975827679372	-0.432261350123491	0.476475358050671	0.82257619929543
Merged-chr15-102403857-2	chr15	102403357	102404357	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2459.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	3.69342979378453	3.8079413069913	4.16601743772014	3.61312367575314	3.67928023659801	4.41060497207125	0.157388121472987	0.799233403887444	0.952241087526368
Merged-chr16-75872415-4	chr16	75871912	75872912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	36854.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	5.52646703994329	4.99217385075479	4.86933764230704	5.55425122638708	5.6038080561458	5.4950464885073	0.736957548915286	0.0595265944627801	0.315843040992919
Merged-chr11-120903464-4	chr11	120902975	120903975	+	980.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 5 of 18)	intron (NM_027745, intron 5 of 18)	29397.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	5.5708482352654	5.56092936678714	5.80874664247312	5.18653170684302	5.37355378138329	5.42397036918102	-0.600285916900643	0.0758189816650833	0.362539808419832
Merged-chr4-6386857-1	chr4	6386357	6387357	+	609.0	f0_balb.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	21177.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.44167753461966	3.66505504300966	3.99775977131316	3.89543316673412	3.40874016671451	3.88285372834274	0.0944011757392875	0.876916027819852	0.971447974901603
Merged-chr18-67500743-3	chr18	67500247	67501247	+	701.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176832, intron 9 of 13)	intron (NM_176832, intron 9 of 13)	35898.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	2.90408607718435	3.16770516857812	3.00678898280082	2.87270272527261	2.91161414311389	2.8969322347263	-0.658575824606284	0.342227160633833	0.731283521951228
Merged-chr17-28709204-4	chr17	28708698	28709698	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	16630.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	6.40983788170082	6.6468175964128	6.65968350074724	6.31724097407804	6.39745527019282	6.50364004217529	-0.274664827952243	0.310912718529533	0.706156013400206
Merged-chr7-143600156-4	chr7	143599660	143600660	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013742)	promoter-TSS (NM_013742)	-70.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	5.32290698026809	5.29090732649082	5.64481957716646	5.45748116108533	5.52062364626068	5.13323303168772	-0.0497860517791222	0.890339352120481	0.974513293810689
Merged-chr11-98786684-4	chr11	98786184	98787184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8832.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.62816793150418	7.04260060368945	7.27494299178384	7.65126469088215	7.80926841858076	7.36706060333781	0.419667553266923	0.130290838545849	0.48249766761863
Merged-chr10-82629808-4	chr10	82629322	82630322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-16.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	7.86111527059104	7.58114561682105	7.54414156806146	8.10426109378619	7.76850239234522	7.61088521272662	0.251148656284832	0.322580858858008	0.715983797441848
Merged-chr19-17124432-5	chr19	17123930	17124930	+	768.56665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181348, exon 8 of 20)	exon (NM_181348, exon 8 of 20)	168312.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	3.25497227865933	3.22668506594492	3.25303718205125	3.4956644244178	3.20682427721512	3.14533596494715	0.198850737084649	0.753177535129589	0.938549578325581
Merged-chr7-102025447-4	chr7	102024943	102025943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-7288.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	7.90083769311309	7.54090203103273	7.3028264934798	7.59205494005615	8.00958243343452	7.52709396339957	0.17718750408253	0.527331438101526	0.849922098680457
Merged-chr10-8122138-3	chr10	8121644	8122644	+	998.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166021.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.5009547738598	4.57531800759042	4.84458493364381	4.72730032587607	4.24880162702955	4.61242345769611	-0.248223208619557	0.582768538509987	0.873826743013405
Merged-chr3-108902137-2	chr3	108901637	108902637	+	641.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001356292)	TTS (NM_001356292)	9592.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	4.9521807642504	5.23475839050066	5.20683949134708	5.49229553205393	5.50202106757548	5.94943147805097	1.01223104700381	0.00579596724262983	0.0680212753631513
Merged-chr13-20220593-4	chr13	20220089	20221089	+	644.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	130082.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.51602347159505	3.27516382947888	3.321414296428	3.8409585994346	3.58642028081369	4.016000648297	1.55926165984178	0.00997559216687362	0.100180302997093
Merged-chr1-106321610-4	chr1	106321111	106322111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	149742.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	5.86681077317202	5.93998025990096	5.57631812723521	5.93243467016775	5.64804537220733	5.77820838272637	-0.0481667780265688	0.881295549462788	0.972635980891511
Merged-chr9-44228347-4	chr9	44227862	44228862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	5684.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	6.45375114006077	6.09693841621712	5.62406674250708	6.29691131954264	6.32227592916892	5.30338474958179	-0.0878069949020845	0.903839801296822	0.97787879266534
Merged-chr2-158138859-2	chr2	158138359	158139359	+	921.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009373, exon 3 of 13)	exon (NM_009373, exon 3 of 13)	7533.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.20814837992777	4.12792772910071	4.62678097335472	4.42804577735924	4.07374852308229	4.61829750641128	0.140373197201782	0.77917623270477	0.945710994231145
Merged-chr6-134092194-3	chr6	134091660	134092660	+	788.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	56460.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.76734496720794	3.57838070406217	3.7661746319235	3.78424797677184	3.52358480203383	3.51408296082062	-0.309022776330737	0.582496998909608	0.873777001717516
Merged-chr19-38846630-3	chr19	38846132	38847132	+	808.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145952, intron 1 of 12)	intron (NM_145952, intron 1 of 12)	10053.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	3.74064393288127	3.97879538876498	3.66209459994827	3.57405140521053	3.44633606075261	3.93246157314469	-0.491561148303611	0.396797958846944	0.773765492504153
Merged-chr8-123342483-3	chr8	123341987	123342987	+	796.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	9774.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	5.53519036838672	5.79279423869905	5.5228775027064	5.6213489397602	5.84791245721599	5.43277013473174	0.0547175837676156	0.872049447828803	0.970261003150518
Merged-chr13-45031469-4	chr13	45030979	45031979	+	775.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29383.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	7.22027227271828	7.30035470033789	6.87073859024849	6.92321306468567	7.05961313569543	6.12828296099581	-0.562420325195498	0.0975184056849443	0.416374769100618
Merged-chr1-180778329-4	chr1	180777839	180778839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	35266.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	6.85247644934336	7.21662517094913	7.15763682746653	7.18502977987632	7.39225463655228	6.96449523376337	0.177302670840066	0.506669673822585	0.838542828803423
Merged-chr6-116311565-2	chr6	116311065	116312065	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290338, intron 5 of 8)	ORR1C1|LTR|ERVL-MaLR	-26457.0	NM_027920	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	3.32686582858695	3.35635978210845	3.33739981561935	3.56231856728128	3.56000821990568	3.5208736466031	0.792030287505319	0.172112328839638	0.550728974500212
Merged-chr5-3342411-4	chr5	3341908	3342908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1485.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.5254927633781	7.88033996750651	7.25294489806004	7.34698973560081	7.32220199843702	6.86373971425019	-0.562510622791546	0.0513842245305311	0.289007608134137
Merged-chr2-156300112-2	chr2	156299625	156300625	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 15 of 17)	L1MB2|LINE|L1	-12348.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	2.43334999826406	2.43248416028742	2.4274409647072	2.58337932687095	2.47291442794615	2.62846896811978	0.783297214240449	0.321267247161473	1
Merged-chr1-34485952-4	chr1	34485378	34486378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12534.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	7.44127159619528	7.54403673843906	7.40032830060478	7.41424020791812	7.84481199310042	7.55026547549009	0.229398801831515	0.348166529198886	0.736087868121677
Merged-chr1-173738414-2	chr1	173737914	173738914	+	826.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204910, intron 1 of 7)	Lx8|LINE|L1	3395.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	6.93420069282038	6.85512245332116	6.36018899508435	6.46104472401487	6.53457881859089	6.51676587848839	-0.393868219409014	0.170996680959789	0.548963962743078
Merged-chr7-83768010-2	chr7	83767510	83768510	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	26829.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	2.808106586789	2.89113939092647	2.85643650792611	2.97677634510858	2.8591480370207	3.1622834313758	0.702261818305766	0.314622314805532	0.708960991451517
Merged-chr3-39269574-3	chr3	39269060	39270060	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6C|LTR|ERVK	382620.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	3.95798062978354	4.22201072125716	4.33719435086026	6.25804629187208	6.71534712738507	5.98386430107295	5.05659401175813	1.38706250614032e-22	1.6029819029295e-19
Merged-chr10-111725036-3	chr10	111724488	111725488	+	646.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-130715.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	2.90829829408278	3.33992511889782	3.09015253738119	2.99481990477267	2.75528885342341	3.27488825789586	-0.461100696016539	0.532273556423859	0.851971173271146
Merged-chr4-154939128-4	chr4	154938573	154939573	+	737.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10996.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	4.7530781649445	4.48503618321442	4.84073890396212	4.28660324616242	4.50368215008966	4.6090443238773	-0.547148485583322	0.212024148294355	0.604420229358776
Merged-chr12-28727284-4	chr12	28726802	28727802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	23092.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	6.58531811372792	6.83889163634274	6.49543060913482	6.84764388065483	6.94344902990738	6.51779773259564	0.214683729688929	0.444787965061061	0.80451094486883
Merged-chr15-83435462-3	chr15	83434968	83435968	+	886.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-2618.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	4.40295141619987	4.33472158924456	4.41177358109787	4.3300187881835	4.36106455705882	4.43613767122284	-0.0209543982084392	0.961721629445208	0.990669330070468
Merged-chr15-58823629-4	chr15	58823134	58824134	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175212)	promoter-TSS (NM_175212)	-207.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.55860993505081	7.07982944076686	7.0965119024602	7.54752635819747	7.13959156761339	7.20523163510069	0.0596837134643285	0.830534443503064	0.960314466809374
Merged-chr12-72664827-4	chr12	72664327	72665327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	1.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	5.652735858762	6.10722537005055	5.97717546008186	5.88966548464775	6.24258132946536	5.70793362126253	0.0936651722446409	0.783730880486748	0.947280426244754
Merged-chr4-120815830-4	chr4	120815353	120816353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-140.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	5.69068710218802	5.77952205025327	5.57395215389768	5.93060883423412	6.13276202871165	5.6078955581657	0.417211086097973	0.205948268008541	0.596518913737799
Merged-chr6-15730408-3	chr6	15729927	15730927	+	694.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	9766.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.40959634110635	4.42990089851144	4.13783520763803	3.92126104576987	3.97648485380296	4.15926557830922	-0.91221251431791	0.0590705699088187	0.314644824497861
Merged-chr12-35711782-6	chr12	35711251	35712251	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16633.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	5.23416701635177	5.06955214674804	5.40759248688989	4.68063902401151	4.70921563471061	5.14746143777507	-0.82997800254297	0.0380897634347823	0.241568066759251
Merged-chr19-48049494-4	chr19	48048981	48049981	+	992.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111769.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	3.09256334385166	2.98217169714364	3.28881185413904	3.03364989490089	3.30867571617088	3.30518096355809	0.430915240365757	0.513894226999025	0.842830426324247
Merged-chr3-40694651-4	chr3	40694143	40695143	+	887.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175515, intron 13 of 15)	LTR16A|LTR|ERVL	-14228.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	3.21004737447586	3.5135048154312	3.41700634839833	3.20146592380814	3.09947300333341	3.53927077645907	-0.397645502630806	0.538645434981343	0.855352379891364
Merged-chr6-72512656-4	chr6	72512196	72513196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31695.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	8.30881415840385	8.61419907978221	8.06016576242858	8.17494717949091	8.39406835613778	7.65967113498228	-0.324642076654478	0.25390646716858	0.651117231535132
Merged-chr12-91719279-4	chr12	91718788	91719788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	MTD|LTR|ERVL-MaLR	67148.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.61829228325158	7.53560458666275	7.49262837828488	7.42312570808331	7.78214896065648	7.50889052042837	0.0523189998283086	0.825515371204009	0.958821343666982
Merged-chr1-106815033-2	chr1	106814537	106815537	+	803.166626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-18312.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	6.01470365943839	5.9520572823095	5.79372556829535	5.62047174630015	5.36301069573105	5.70002628250129	-0.679282190622344	0.0343494652905149	0.226919580058729
Merged-chr8-120700116-3	chr8	120699603	120700603	+	848.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31783.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	4.11127889271368	4.2830081206182	3.86013147906488	4.11781570438409	4.22212196587318	4.27724246031354	0.274978182479717	0.578691088885057	0.872437129840066
Merged-chr4-155201726-2	chr4	155201226	155202226	+	986.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	20809.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	6.43764808437522	6.26668691248204	6.33131740619774	6.30686484316203	6.53117695794072	6.51918138686926	0.179027043806716	0.512768519169384	0.84210398297292
Merged-chr3-109340028-3	chr3	109339518	109340518	+	854.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020505)	promoter-TSS (NM_020505)	-665.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.27693248870004	4.39778350384512	4.37559137918475	4.5732654239634	4.62601719889853	4.48673841060936	0.553894068907362	0.197113076938986	0.585032456070594
Merged-chr3-121171690-4	chr3	121171180	121172180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025637)	promoter-TSS (NM_025637)	15.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	6.54109252217508	6.5619649835765	6.46051617559035	6.12590835059099	6.18528243142821	6.02403752141495	-0.668163576568938	0.014541349783842	0.129870835972437
Merged-chr3-57732056-4	chr3	57731544	57732544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4013.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	5.16661387113104	5.04425786426679	4.82148216669878	4.8936538793222	4.98544231470239	4.88798860962389	-0.21878964295985	0.567866388763889	0.868401919464844
Merged-chr11-82845903-4	chr11	82845397	82846397	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	-16854.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	6.66665418329469	6.7354833246477	6.51310607803266	6.62037300944198	6.38496292525603	6.50042902617984	-0.233155571101598	0.381511930511698	0.763170610491811
Merged-chr11-24185135-4	chr11	24184641	24185641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104446.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	2.71284184939686	2.78452108772865	2.74418535318165	2.67539258733398	2.56327282557805	2.81709815414662	-0.349607121727122	0.638064819464338	0.897380718500389
Merged-chr4-105253802-4	chr4	105253316	105254316	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	96469.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.66992304848157	5.59588184388342	5.60782393170802	5.69024280340591	6.16382748580966	5.69862041550176	0.470279511587578	0.159601819794115	0.531877190382303
Merged-chr16-92439937-2	chr16	92439437	92440437	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	26232.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	5.96476521560894	5.52427290934847	5.55236046690162	5.19151998135444	4.80781530241175	5.11022967992877	-1.31417943954982	0.000463874227137913	0.00991473071967415
Merged-chr11-105474545-3	chr11	105474059	105475059	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17824.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	4.4978554211231	4.55546751812767	4.29963640217128	4.40871067732641	4.33158140775405	4.36820407242493	-0.244496375069753	0.578544849165654	0.872437129840066
Merged-chr16-75874716-4	chr16	75874220	75875220	+	901.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	34546.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.63832700581824	4.37252317158998	4.43358815635194	4.41012028183644	4.39543293589387	4.22518838080225	-0.3504263816091	0.433085979800983	0.797623786395605
Merged-chr3-88620119-1	chr3	88619619	88620619	+	641.0	f1_balb.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-987.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	4.74072822091945	4.07345959249744	4.47775040285623	4.30568162221087	3.91356512813833	4.2408403708397	-0.799625072647196	0.121797376345231	0.466849055144701
Merged-chr10-25286470-3	chr10	25285983	25286983	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 2 of 7)	ID_B1|SINE|B4	12680.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.70342995849323	5.87479448631749	5.38426482987212	5.54517101938892	5.80378460601318	5.63046062880351	-0.0235580073573884	0.944862146109908	0.987875414328125
Merged-chr6-16896643-4	chr6	16896152	16897152	+	965.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	Lx3C|LINE|L1	1789.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.93315298936164	6.33890152316364	5.95175171561399	6.17235038102934	6.10105768393532	6.2744107462634	0.138350794438283	0.650317447781058	0.902576889668442
Merged-chr16-87704668-2	chr16	87704168	87705168	+	998.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	ORR1C1|LTR|ERVL-MaLR	5714.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.26757709368869	3.31484595928647	3.14781710673461	3.33109625061238	3.28568320323177	3.33780855534361	0.270021316356393	0.660544325272415	0.905981809862142
Merged-chr19-55233743-4	chr19	55233269	55234269	+	970.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	7467.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	4.47187570768684	4.54931715587241	4.44831972061157	4.85276110455058	4.57076361548593	4.51654359733201	0.398303261722113	0.350609188221443	0.738606748025972
Merged-chr17-26514484-2	chr17	26513984	26514984	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6012.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	3.75916025736188	3.57443179729429	3.44717233430129	3.46426902571958	3.20086380073322	3.62744405326341	-0.620753373978982	0.311350452744339	0.706465219571547
Merged-chr12-110447472-3	chr12	110446986	110447986	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135001, intron 1 of 13)	CpG	307.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	5.3117296524749	5.2435440356247	5.57914970928456	5.72446777658388	5.42337536424444	5.50262088707373	0.346234113658192	0.316679157901258	0.71072796684148
Merged-chr1-85658707-4	chr1	85658198	85659198	+	892.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 1 of 19)	intron (NM_013673, intron 1 of 19)	8710.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	3.42978151163887	3.41971968930221	3.54523342550198	3.31696198351339	3.13653507589171	3.71317314017624	-0.229761100324102	0.717287879084219	0.927005250411664
Merged-chr19-53314318-4	chr19	53313842	53314842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	CpG	2897.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	7.34556338069551	7.03442321942335	6.87694348886354	6.8939269760741	6.9371440085592	6.51183471939774	-0.462186559062038	0.102660456063196	0.427236732425048
Merged-chr5-123377452-8	chr5	123376990	123377990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17308.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	8.10849963971021	8.26224655157238	7.9196684943997	8.29234718662302	8.81370153738104	8.19808852174124	0.509025652059227	0.0517955075187874	0.290515712141777
Merged-chr10-79929071-2	chr10	79928571	79929571	+	802.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	1730.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	3.00269647194856	2.76785509054833	3.03889761601029	2.97823296461568	2.72066663173444	3.05357329050689	-0.0915737370048477	0.898787664407966	0.976432549466174
Merged-chr2-163472642-4	chr2	163472137	163473137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028122)	promoter-TSS (NR_028122)	-8.0	NM_173397	228859.0	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	4.61563583418201	4.88596402337932	4.96924950335197	4.96025903441258	4.70457066082302	4.61370998067136	-0.126554684995147	0.760104451472344	0.940612302172975
Merged-chr1-143710596-4	chr1	143710101	143711101	+	974.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-7708.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	4.30305958533647	4.39081601942328	4.69611329102334	4.11025017845171	4.2804470367603	4.32860125540257	-0.583661455215637	0.209275229963129	0.600688997025494
Merged-chr4-138083302-4	chr4	138082796	138083796	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355700, intron 2 of 30)	intron (NM_001355700, intron 2 of 30)	55222.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	5.03791045243164	4.84272643524741	5.0036792026766	4.86681384541677	5.18536432538453	4.84669982820042	0.0582940612949244	0.881496984765425	0.972779855548561
Merged-chr6-50163031-7	chr6	50162521	50163521	+	904.892883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 5 of 13)	intron (NM_001361248, intron 5 of 13)	52161.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.47374286397267	5.44114600493818	5.52366181429177	5.67656315989193	5.34176234655241	5.31293314484323	-0.0402068177683103	0.906314434116259	0.978646898549161
Merged-chr1-165461975-4	chr1	165461463	165462463	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027430, intron 1 of 4)	intron (NM_027430, intron 1 of 4)	755.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	5.91177708723369	5.93529993869042	5.8801638232176	5.90164437927254	6.08479131570175	5.81540971749054	0.0672371342659976	0.822716736984049	0.958145398000878
Merged-chr15-93251955-6	chr15	93251419	93252419	+	842.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	23260.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	6.35373583194164	6.39392768073075	6.23880419915125	5.86578776199761	6.09151382605524	5.89101532176407	-0.630654530905173	0.0294190490462303	0.206260552160325
Merged-chr11-52366160-2	chr11	52365660	52366660	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	5298.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	2.97895005805223	2.99713537801635	3.24773863779511	3.07888690492136	2.84814888513255	3.52158467012932	0.415069715434995	0.564173711256421	0.866201054824694
Merged-chr9-63758168-4	chr9	63757671	63758671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016769)	promoter-TSS (NM_016769)	-177.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	6.97177039498132	6.73859230127351	6.61904670751985	6.85477249528249	6.51697334811282	6.79071034831291	-0.106953858478125	0.69671584709831	0.919584129006226
Merged-chr5-116023545-3	chr5	116023078	116024078	+	742.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031869, intron 1 of 6)	intron (NM_031869, intron 1 of 6)	850.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.58042663791121	5.50912688894561	5.667935171663	5.6038600018752	5.51636820626674	5.65078004206389	0.00778263879963831	0.980562261932479	0.995512982807197
Merged-chr18-79293966-4	chr18	79293479	79294479	+	980.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-184588.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	4.55931918240316	4.53617847624365	4.79716422449818	4.38224462852009	4.28978208565686	4.52535340722489	-0.59238523076085	0.173227519490428	0.551957215225209
Merged-chr5-105654832-4	chr5	105654314	105655314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45155.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.42938047269644	4.40635311577302	4.28189495338702	3.75703013737123	3.40601324465043	3.69981543829191	-2.45473008558988	1.02904923137143e-05	0.000411263825379223
Merged-chr5-77191271-1	chr5	77190771	77191771	+	683.0	f1_c57bl6.idr	Intergenic	Intergenic	19934.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	3.14979916874088	3.64233694857561	3.75122766005067	4.02325482509546	4.01525078818201	4.50963576076117	2.06705820551587	0.0939789687339495	0.408372442680278
Merged-chr2-126490815-4	chr2	126490334	126491334	+	931.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	719.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	4.01729414956161	4.14279807188469	4.16237304775076	3.60682390028882	3.67487519882234	3.74844277968831	-1.37753355203994	0.00857405790126203	0.0904908941968812
Merged-chr6-113334249-4	chr6	113333743	113334743	+	984.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_149720)	TTS (NR_149720)	7267.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	6.6092619331626	6.55374273957774	6.84325657181018	6.71993334632556	6.69767578584414	6.96938682325687	0.200457987985459	0.451229714314765	0.808957790071745
Merged-chr7-19001266-4	chr7	19000758	19001758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_145579, exon 3 of 3)	3' UTR (NM_145579, exon 3 of 3)	-2807.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	5.59377836398386	5.5019639590547	6.19543498684656	5.79747968185528	5.83067267247023	5.83039517318053	0.0583301468919297	0.868751813117971	0.969723933058598
Merged-chr14-47371866-4	chr14	47371377	47372377	+	898.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1983.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	2.86167332151441	3.13872696676523	2.88702531105773	3.10851433535993	2.99607907204993	3.2556408202479	0.655783627349646	0.344843820551954	0.733368210920794
Merged-chr8-94667098-1	chr8	94666598	94667598	+	969.3333130000001	f0_balb.idr	promoter-TSS (NM_024269)	promoter-TSS (NM_024269)	7.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	5.33888380209067	5.21064012740676	4.47057366685198	4.86644899629897	4.69418976720528	4.38952589072788	-0.876698757901954	0.0704219538311698	0.347734255200521
Merged-chr8-88237534-3	chr8	88237034	88238034	+	775.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164499, intron 2 of 11)	(TTTTTG)n|Simple_repeat|Simple_repeat	-34869.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	3.41653964844054	3.4185278014068	3.55049973576995	3.82112293766768	3.66966865502675	3.56696790491881	0.834630514114683	0.140172511754509	0.500409770025813
Merged-chr7-29998262-1	chr7	29997762	29998762	+	612.0	f0_balb.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	14307.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	4.63912085200697	4.71015126040772	4.11837271389049	3.77393614710668	3.8202279391752	4.23740408219705	-1.59638541932983	0.0027021358130546	0.0388860803757606
Merged-chr6-87525360-4	chr6	87524835	87525835	+	986.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	7924.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.35257359595947	5.37677078136268	5.14213997040219	5.11640992065601	5.04257152310717	5.20662527610711	-0.379902985127555	0.285025259548155	0.682584020621179
Merged-chr5-105139204-2	chr5	105138725	105139725	+	797.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359079, intron 1 of 11)	intron (NM_001359079, intron 1 of 11)	361.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	5.61841534277827	5.28115267608453	5.54382820567274	6.61670772806731	6.51339661357609	6.36691239902352	1.77428311042388	7.85697559796464e-09	7.31278775789084e-07
Merged-chr18-53746828-3	chr18	53746328	53747328	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2281.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	5.73480488565613	5.54376480729212	5.42373806978735	4.17047405934306	3.82389057768566	4.37749999513224	-3.69182714094612	2.91876695342449e-14	7.33730394744848e-12
Merged-chr17-19766315-1	chr17	19765815	19766815	+	555.0	f1_c57bl6.idr	Intergenic	L1Md_F|LINE|L1	-7048.0	NM_001104565	627636.0	Mm.469855	NM_001104565	ENSMUSG00000091771	Vmn2r103	EG627636|Vmn103	vomeronasal 2, receptor 103	protein-coding	2.16148348197908	2.02172510631924	2.32189784796315	1.87257128150951	1.98745459013934	2.14187973649248	-1.30840766488358	0.183901140699843	1
Merged-chr12-108631241-4	chr12	108630721	108631721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163395, intron 1 of 12)	L1MEc|LINE|L1	-4532.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	6.56895449444943	6.35814894585453	6.31707855554102	6.2864466104303	6.44755748057912	6.48918937174114	-0.0250513475925835	0.92754829916173	0.983591049443068
Merged-chr2-66256645-4	chr2	66256146	66257146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-29.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	5.13627613203934	5.01471991410923	5.16264040244576	5.03760036859277	4.9366154263552	4.79361597319453	-0.36588906789446	0.328568579771467	0.720753466910815
Merged-chr4-130782129-2	chr4	130781629	130782629	+	676.166626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001159604)	TTS (NM_001159604)	-10408.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.80722603804236	3.66002853971129	4.25030874133507	4.02142260583013	3.80827078708696	3.86593008920538	-0.0585929273106976	0.915427772555494	0.980989788385869
Merged-chr8-34965761-4	chr8	34965258	34966258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175091)	promoter-TSS (NM_175091)	-68.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	6.53253739817954	6.52682590829702	6.40260659007684	6.61615566471736	6.03279420632392	6.75962500048993	0.00793873993976918	0.980012820752455	0.995416130723271
Merged-chr18-3983162-4	chr18	3982653	3983653	+	881.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182679.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.044187515545	4.838551568839	5.40344633803219	5.33977053275317	5.27808818329163	5.49328357834283	0.540073767857012	0.154941488766238	0.524250626108535
Merged-chr5-129725038-4	chr5	129724584	129725584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008095)	promoter-TSS (NM_008095)	9.0	NM_008095	14467.0	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	7.4882297390726	7.08486655804986	7.21547936432766	7.63882142806445	6.97066194799454	7.14958755164198	0.0160052877427622	0.956407204093182	0.989887454023164
Merged-chr14-55107151-2	chr14	55106651	55107651	+	826.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	-558.0	NM_007455	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	3.57745369108182	3.36300071375615	3.53615499919746	3.26916115169827	3.31534268045751	3.44640131632559	-0.582807530749503	0.329139449201378	0.721152738507735
Merged-chr7-123366157-6	chr7	123365588	123366588	+	864.0639039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3827.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	5.58051040286991	5.508483275109	5.51909246078557	5.44212524238738	5.70929349675657	5.60984953138803	0.111202243769747	0.732549505492642	0.931782229960786
Merged-chr15-102624381-2	chr15	102623881	102624881	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	1083.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	5.09582528217665	5.32140342146975	5.38326503107799	5.07025847948971	5.52904466654395	5.41679597150132	0.179270527650103	0.626991193866401	0.892988961867358
Merged-chr1-165762094-4	chr1	165761602	165762602	+	988.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-1656.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.43801751787975	5.42362951716573	5.47156489226925	5.57458048373263	5.45072869141512	5.79664167861474	0.305388637666967	0.358095493665063	0.74454984718519
Merged-chr12-85169591-4	chr12	85169032	85170032	+	916.520874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001271705, exon 5 of 7)	exon (NM_001271705, exon 5 of 7)	6450.0	NM_001271705	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	3.19316489631916	3.23734889433944	3.15545414369577	2.96808159852662	3.07109338317244	3.22697625142141	-0.473401592338305	0.466322162011113	0.817498201823315
Merged-chr8-41004259-2	chr8	41003759	41004759	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-13209.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.52282271747609	5.50769111253734	5.44954138398779	6.75547945295893	6.78420269511378	6.47718415695355	2.03135745443983	7.2932267697183e-12	1.21245179257292e-09
Merged-chr7-113513724-4	chr7	113513229	113514229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-105.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	6.80991249289746	6.76441361241434	6.74880221635503	6.85072957436653	6.4589529367483	6.6472749561272	-0.184392399249719	0.488774639412306	0.829423271678195
Merged-chr1-180983233-4	chr1	180982737	180983737	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR22_Mus|LTR|ERVK	34332.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	3.8637287686827	4.03671877189412	4.09886853355343	4.27974811310787	4.45115119438863	3.96684487395322	0.733721720302084	0.144358292008337	0.507146496154939
Merged-chr5-65435964-4	chr5	65435466	65436466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009466)	promoter-TSS (NM_009466)	-124.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	6.83430157135496	7.04203656853347	7.24884547145019	6.7858943028623	6.97650608374514	6.7705406672101	-0.294262694697259	0.264457887387371	0.662362648056359
Merged-chr5-143058459-1	chr5	143057959	143058959	+	674.0	f0_balb.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54561.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	5.80340580111768	5.80174662206028	6.45057232366958	6.1173270984936	6.03981173268099	6.14121853635142	0.0957511184656641	0.775587186620555	0.944685135119386
Merged-chr8-94365719-4	chr8	94365195	94366195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-20734.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	7.27421925325931	7.23111748502077	7.00340726940716	6.71774925331373	6.91037975136337	6.73389867905169	-0.587470933895878	0.0197871956311667	0.160289878192576
Merged-chr2-131178936-13	chr2	131178414	131179414	+	879.367004	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007682, exon 1 of 1)	exon (NM_007682, exon 1 of 1)	1153.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	5.81281287516791	5.92780843834491	6.05334482115211	5.65609762906359	5.60175367148709	6.11344580679978	-0.237115582097062	0.472807385188341	0.820550293768681
Merged-chr1-181014908-4	chr1	181014428	181015428	+	975.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	2641.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	6.97557009561917	6.71922297100251	6.98407186255	7.05007431304639	7.46657903684913	6.79138183418537	0.3812426983126	0.18890008906514	0.574404276090199
Merged-chr8-26961298-2	chr8	26960798	26961798	+	683.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16038.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.91559547667029	4.90575615505109	4.90039974371459	4.44260799232564	4.21417645889766	4.66902371412988	-1.12590732016089	0.00832869176994341	0.0885643370565255
Merged-chr17-34587533-4	chr17	34586978	34587978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010929, exon 30 of 30)	exon (NM_010929, exon 30 of 30)	-2328.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	7.70570981580265	7.6911438184395	7.30475353130294	7.46237350456902	7.7395909573033	7.58630306244602	0.0227984516449646	0.926641296703786	0.983551822187064
Merged-chr13-30659928-4	chr13	30659431	30660431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-128.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	8.06677836740754	7.67201928154973	7.72646691754157	7.99203444763893	7.83214878959725	7.6149069190823	-0.0156559017160267	0.949671996583761	0.988243921877722
Merged-chr4-63553942-4	chr4	63553445	63554445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4818.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	5.70878856721221	5.89676712526183	5.85175586343303	5.94301492217842	6.09429213846141	5.98476781805651	0.33839367080832	0.25744405620195	0.654748449688293
Merged-chr15-11399800-4	chr15	11399300	11400300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-142.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	6.04782393575868	6.29313654602246	6.37356594607725	6.40077193149997	5.87873359246914	5.6741652018832	-0.360311053325998	0.292471738611445	0.6896822727195
Merged-chr11-119946922-3	chr11	119946423	119947423	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	3831.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	2.61774148762717	2.63428151892846	2.76009713400686	2.57809146210909	2.4720115051045	2.52330355016153	-0.855411302918826	0.269221761504025	1
Merged-chr12-3235856-3	chr12	3235368	3236368	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	77.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	8.70452839533824	8.89486360208798	8.27666155358497	8.69941266075407	9.05496994583434	8.22988371638411	0.0788242704550747	0.787106189447942	0.948693859994902
Merged-chr18-44393583-4	chr18	44393043	44394043	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	13043.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	3.27643839626119	3.5674588312971	3.70371740843016	3.88232484878294	3.36739239033969	3.61882072524789	0.399938252782421	0.517883183444285	0.844840133424329
Merged-chr9-50661673-4	chr9	50661164	50662164	+	970.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1884.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	3.2740220099931	3.45464503745403	3.5701369710823	3.95826745477575	3.89612010565919	3.90026135280677	1.7008027671789	0.00277057182852075	0.0396304169072196
Merged-chr8-84420722-3	chr8	84420211	84421211	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252060, intron 1 of 47)	L1ME1|LINE|L1	5347.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	6.99905897925349	6.98764621728729	6.9577901115825	4.37518130946234	4.01779056513528	4.66137095042062	-6.49261367511898	3.38145212869203e-27	9.1081286498174e-24
Merged-chr11-68503019-4	chr11	68502527	68503527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	8.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.23012640479924	5.07605006858134	5.53049398454941	5.55982757477341	5.29019636525435	5.83710142499139	0.559510749804704	0.136012193275445	0.492905159738987
Merged-chr4-133813571-5	chr4	133813048	133814048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-59937.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	8.14040088396362	7.82604324094548	8.02361359449699	7.92488731494577	7.84788327281371	8.04412932075866	-0.0926639925365775	0.68029651354656	0.914210928957366
Merged-chr2-118743615-3	chr2	118743173	118744173	+	816.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Plat_L3|LINE|CR1	-2085.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	3.3492945810031	3.14556542171233	3.50955870481311	3.18790652176061	3.11247468387798	3.57879244310066	-0.144862468252333	0.825052381489032	0.958678376748211
Merged-chr1-131287480-4	chr1	131286983	131287983	+	855.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7920.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.91358217046449	4.54684513948829	5.01930808227803	4.91582548256933	4.70315741406817	5.14675391474928	0.199078867883664	0.637670243762959	0.89735407749672
Merged-chr7-142374255-2	chr7	142373755	142374755	+	840.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-509.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.34060648646748	4.06779084223585	4.29505837999998	5.42746161450036	5.36046889014741	4.90061300328585	2.40440285025523	5.23711102686587e-08	4.03461236724028e-06
Merged-chr3-95623728-2	chr3	95623228	95624228	+	827.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-1252.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.6937764452692	3.55009341961108	3.71576961361141	3.75049382137063	3.37413782088905	3.83447829939051	0.0244255495305854	0.966404651028187	0.992302763946523
Merged-chr17-69177264-4	chr17	69176743	69177743	+	974.991699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17887.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.99465403779811	6.45554258601582	6.12382237999026	5.99055977163648	6.31562802411768	6.34620324535044	0.0240648135582075	0.938685505669734	0.986515091506254
Merged-chr2-156542944-4	chr2	156542436	156543436	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-4640.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	3.80525921800829	3.83214587100183	3.79109848661633	3.91827755145019	4.06580466375612	3.96285287513838	0.547518837598222	0.278984117457314	0.676449294675764
Merged-chr15-30468998-4	chr15	30468463	30469463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	296370.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	6.94681354100992	7.32873596305897	7.16740790798296	7.06710520925362	7.52639922024011	7.09861376715908	0.149217930630414	0.586810553570438	0.875655897836385
Merged-chr5-104046824-4	chr5	104046306	104047306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028794)	promoter-TSS (NM_028794)	-58.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	7.89579195409876	7.93845958323087	7.91833680249287	8.05917365194629	8.13054614803751	7.81090478349084	0.137161331087331	0.533418940860353	0.852457858765356
Merged-chr4-8667340-4	chr4	8666855	8667855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23051.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.76354687703324	3.92442224480599	4.38160850670869	4.23660223103417	4.28600507146392	4.40614488559681	-0.25324436795423	0.627829983852124	0.89339186113949
Merged-chr10-118080163-3	chr10	118079649	118080649	+	730.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-61638.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.75840974838452	5.35420853452721	5.7716124310976	5.02611747305811	4.93114942086042	5.09019164920056	-1.25031676007115	0.000616467902075353	0.0123751655478615
Merged-chr5-123059303-1	chr5	123058803	123059803	+	1000.0	f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-12287.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	5.26940061596205	5.11812122041903	4.86324262688141	4.39856831681828	3.98913734922381	4.69873648641212	-1.70983241447134	0.000295748801318106	0.00688739609853818
Merged-chr11-117989621-4	chr11	117989149	117990149	+	814.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	2792.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	5.80329728201665	5.54561777359452	5.46073618142027	5.735576304593	5.56734007787627	5.61211250827919	0.0361852689407951	0.912431769283898	0.980363124210176
Merged-chr5-99327252-4	chr5	99326735	99327735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-74308.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.96731920417778	8.1956474798558	7.6611407839458	7.7982178183708	8.14623905863386	7.77284705292685	-0.0619127269053874	0.81066441831874	0.955084033068073
Merged-chr14-120360347-3	chr14	120359842	120360842	+	926.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53890.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.70865104903504	3.72138001880623	3.54760602313647	3.42435202391674	3.34744937864883	3.6711572546984	-0.672190534553795	0.2463238825191	0.643402690863389
Merged-chr1-149946693-4	chr1	149946184	149947184	+	885.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14606.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.31898825171908	6.38060306586785	6.28447166706048	6.0710975715101	6.15510085043371	6.5249408171971	-0.126888914154054	0.664103388745999	0.90751097049737
Merged-chr2-143837425-4	chr2	143836951	143837951	+	931.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	25722.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	2.45475143937409	2.34958077973846	2.41216451546275	2.52738696334373	2.40343422231567	2.73574798399	0.913580062246699	0.261989122218975	1
Merged-chr7-48876701-4	chr7	48876169	48877169	+	858.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013368, intron 4 of 12)	intron (NM_001013368, intron 4 of 12)	4372.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	4.44594659942386	4.14084031254	4.19351419314123	4.1649870510009	3.86211476243464	3.91445816576701	-0.810017831249087	0.105419172700482	0.433345887945289
Merged-chr12-111471336-4	chr12	111470823	111471823	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	14500.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	3.24031893734016	3.12688255262576	3.38215318924215	3.21195915362506	3.19646027349341	3.55459329221914	0.300791463297183	0.636354542420127	0.897104328239736
Merged-chr7-19561147-2	chr7	19560647	19561647	+	884.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199149, intron 1 of 12)	intron (NM_199149, intron 1 of 12)	1251.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	3.43164780889213	3.40725392813369	3.81337749808257	3.71439344662793	3.56039455447588	3.97288292245478	0.676175958375821	0.25115849074419	0.648722079702291
Merged-chr11-80177407-4	chr11	80176907	80177907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6465.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.35607559919131	7.10750076772437	7.31934715226581	7.28689061080728	7.54268010318424	7.35453874203657	0.208919957909372	0.387683511799513	0.767721672469137
Merged-chr10-127320965-2	chr10	127320465	127321465	+	615.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285785)	promoter-TSS (NM_001285785)	-999.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	4.87105607787	4.87188770078224	4.61854137738402	4.80682597914619	4.70598919612278	4.72685405279778	-0.127016693775131	0.750741106367427	0.937615268276031
Merged-chr16-97960668-2	chr16	97960168	97961168	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1954.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	3.35401427780222	3.18978534107095	3.29777392727668	3.4846610774351	3.24146781734989	2.9295382396735	-0.161180586541136	0.81582343850819	0.956495686206055
Merged-chr4-123996006-4	chr4	123995501	123996501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78568.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	5.68591883345512	5.62388831168509	5.75579384102029	5.27180368122034	5.39717185882075	5.09717572478602	-0.789369859198304	0.020545190623331	0.164288896679722
Merged-chr17-36020900-4	chr17	36020395	36021395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008207)	promoter-TSS (NM_008207)	-335.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	6.8402061272239	6.38933137864654	6.74554374323652	6.91847069953273	7.08250094793286	6.72504549977591	0.396238769755207	0.159198260485113	0.531158781765317
Merged-chr6-88047997-4	chr6	88047497	88048497	+	927.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2727.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.20589927645241	3.79975461878935	4.23838577956644	4.22654320011316	4.04025234757127	4.21757497460802	0.195940376488961	0.697842887236397	0.920111182740464
Merged-chr14-21654033-4	chr14	21653535	21654535	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 12 of 16)	MTD|LTR|ERVL-MaLR	60541.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	3.68276134881043	3.56774043500842	3.44278361076522	3.53560684770607	3.52624196285102	3.27436878839195	-0.417081682924992	0.48550990212504	0.827495041704636
Merged-chr10-21651652-4	chr10	21651149	21652149	+	947.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39196.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	5.41794088962149	5.75131362879424	5.46547071600736	5.44664209174425	5.7593200055833	5.58682046492192	0.0943327144250186	0.782240036302439	0.946484752418558
Merged-chr6-29264541-4	chr6	29264051	29265051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7937.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	5.71410064034846	5.3913651351705	5.01652392717049	5.75674106736015	5.30353480958752	5.08432634932368	0.0057325736154319	0.989011425970665	0.997508825363283
Merged-chr13-94295093-3	chr13	94294588	94295588	+	785.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9257.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	2.99173819312758	2.82719935165735	2.99271686762464	2.48697352985089	2.76790360341686	2.76695709541408	-1.3417673740168	0.0896480729990382	0.397815415610046
Merged-chr1-131866562-4	chr1	131866048	131867048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-729.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	7.51988848723234	7.55608388128059	6.6953002690331	7.10005413980415	7.42571687012438	6.99640827151014	-0.195230749981794	0.542966827810891	0.857468369859798
Merged-chr13-21441034-4	chr13	21440473	21441473	+	660.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162919)	promoter-TSS (NM_001162919)	80.0	NM_001012311	319207.0	Mm.434384	NM_001012311	ENSMUSG00000055313	Pgbd1	4921509E05Rik	piggyBac transposable element derived 1	protein-coding	3.56034822027722	3.78885368180653	3.78074889981588	3.49769314861369	3.4504577039368	3.59649705600867	-0.717235396007038	0.20337785044185	0.59329888789978
Merged-chr8-22185756-4	chr8	22185226	22186226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004140)	promoter-TSS (NM_001004140)	93.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	3.95272585918992	3.85622926963423	4.41610063749438	4.08045851288029	4.12462773971157	4.10075763910846	0.0479059006184475	0.925855974068396	0.983305773102619
Merged-chr5-149265054-4	chr5	149264560	149265560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308462)	promoter-TSS (NM_001308462)	56.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.23987742618158	5.31824371124424	5.68224478823072	5.35072411625125	5.22565238215314	5.4251463848785	-0.16736973066434	0.639568062206922	0.898199312621371
Merged-chr3-52269169-3	chr3	52268677	52269677	+	949.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019739, exon 1 of 3)	exon (NM_019739, exon 1 of 3)	840.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.43937943999699	6.17543254237127	6.2272080613747	6.65048143180166	6.22171251713852	6.3482313220403	0.213161733712476	0.470956312975738	0.819784379107259
Merged-chr8-120114023-4	chr8	120113521	120114521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-131.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	7.91778980513746	7.99402321076051	7.72574052420048	8.01555268524944	8.01872030834481	7.70905632368781	0.056305033006698	0.807710947978433	0.954557080558103
Merged-chr2-119741761-2	chr2	119741218	119742218	+	718.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-619.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	5.32391600535739	5.30587399789917	5.29613264137989	5.47328946257805	5.51784550475582	5.6476847710543	0.453458700573661	0.170634589672417	0.548149291076461
Merged-chr8-71368520-4	chr8	71367963	71368963	+	816.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025917, intron 4 of 7)	intron (NM_025917, intron 4 of 7)	1246.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	5.42952565840782	5.46718873942797	5.74599693612583	5.96525861869709	6.16288764727926	6.02143802226454	0.925772745992273	0.00312576332965485	0.0434567276748406
Merged-chr9-118686092-2	chr9	118685592	118686592	+	908.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-25600.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.98177547653699	3.03069744635295	3.50391354086732	3.12618213142793	2.78647259655151	3.26774349565845	-0.493396949561429	0.500279465254375	0.834978949366358
Merged-chr17-24360104-2	chr17	24359599	24360599	+	586.0	f0_balb.idr|f1_balb.idr	intron (NM_013855, intron 2 of 32)	intron (NM_013855, intron 2 of 32)	8076.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	3.49459724831564	3.3023543948929	3.52690159042176	3.46354111848398	3.33075014445437	3.32088900582804	-0.259353304964088	0.664441011896494	0.907585158243155
Merged-chr5-122697493-3	chr5	122697044	122698044	+	968.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10000.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.18796485096684	4.75724347087213	4.5885190837374	4.13607903039037	4.23058251946088	4.24231208421446	-1.68265905200383	0.000306006505513459	0.00709055675599106
Merged-chr2-90641633-4	chr2	90641157	90642157	+	997.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-35558.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	6.25016495756618	6.34283009322665	6.04976356539914	5.55579712690769	5.79844330019527	5.94985701425559	-0.789645975954728	0.0106904071380074	0.105346244913753
Merged-chr6-148443574-1	chr6	148443074	148444074	+	561.0	f0_balb.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	778.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	3.17826215811679	3.03893997905376	3.0818003585096	3.41407605565817	3.26917703036192	3.21589986123384	0.851189062710866	0.182238372890836	0.564974338265291
Merged-chr7-83723110-2	chr7	83722610	83723610	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	9288.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	4.54782028812489	4.25803609747651	4.32911611927331	4.61734110516278	4.79828330936687	4.61634405451727	0.733495930438723	0.0914229622040909	0.402491241466694
Merged-chr16-31275253-4	chr16	31274759	31275759	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025800)	promoter-TSS (NM_025800)	18.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	7.35769546328732	7.61359308678532	7.41986867307696	7.35669435735732	7.20879024993174	7.29026471341045	-0.275613185826242	0.24077309035583	0.63779309813394
Merged-chr15-27678737-2	chr15	27678237	27679237	+	862.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	2805.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.61415589842282	4.66629146678607	4.69044973322292	4.93702607489509	4.80185420770868	4.79587455861598	0.441673215951733	0.262793708095509	0.660760123749194
Merged-chr5-140798414-3	chr5	140797914	140798914	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	ID|SINE|ID	32017.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.47547184101408	5.27617611984977	5.51063991619462	5.32575591078033	5.16173928545913	4.95091763359416	-0.514976457849706	0.154696706621927	0.52390421792532
Merged-chr11-44355071-4	chr11	44354592	44355592	+	821.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44971.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.48755037764016	3.55699922268846	3.44894667861937	3.55909842417718	3.84525151266945	3.6322116372309	0.665472850652034	0.242068000767211	0.639144323406679
Merged-chr9-66978100-3	chr9	66977607	66978607	+	819.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M5|LINE|L1	-2623.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	3.4446466886115	3.50648644954829	3.33888297988781	3.29068043571539	3.38131402021402	3.72527738702345	0.134945118369823	0.824849071770443	0.958596193929081
Merged-chr4-141767830-2	chr4	141767257	141768257	+	908.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172338, exon 11 of 15)	exon (NM_172338, exon 11 of 15)	21082.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.81626800161027	6.11083843154002	6.22332905287772	5.76124854778897	6.00013557297695	5.94276826843717	-0.255612014944201	0.413147782150424	0.784770288990094
Merged-chr16-23308458-2	chr16	23307958	23308958	+	868.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17988.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.09961394960104	5.12229069865122	5.44286671822321	5.03510449871649	4.42109725821048	4.67193607534793	-1.06962230037309	0.0127382775990274	0.119240252273582
Merged-chr14-70823284-4	chr14	70822786	70823786	+	925.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29647.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	4.27320627614856	4.20768417468695	4.33188619049063	4.24562177779076	4.1055871380703	4.02534075152216	-0.380278589169134	0.416663038122517	0.787553906594394
Merged-chr6-90736828-4	chr6	90736322	90737322	+	928.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	CpG	-20293.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	3.57281345974555	3.32902339370884	3.18144165774922	3.64091716662504	3.12722721691063	3.59964587008033	0.369577739117707	0.579224356294429	0.872437865758865
Merged-chr2-60823369-2	chr2	60822869	60823869	+	728.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	58069.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.68506315447774	4.67930168095784	4.50371938144405	4.25264166834903	4.47129330827538	4.52860575342058	-0.519405959587622	0.229825477277026	0.625509726187777
Merged-chr14-103474961-2	chr14	103474461	103475461	+	710.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38380.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	4.04912296476247	3.71170128072801	3.79438690249024	3.97289957115732	4.26149545831458	4.06893787743763	0.740064300322482	0.15601288704489	0.526206741192997
Merged-chr4-24899389-4	chr4	24898891	24899891	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026742, intron 2 of 2)	L2a|LINE|L2	1308.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	3.44851429227496	3.33341674119935	3.6770516128403	3.66616346155798	3.4406588069804	3.64547948588261	0.352323238872536	0.547359830562148	0.859266262227511
Merged-chr2-45069497-3	chr2	45068990	45069990	+	651.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	40787.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.04246107520584	4.4265472688655	4.67952200206127	4.16304583690532	4.23003386183487	4.39986123873598	-0.359201632618285	0.465404611610256	0.816993516517273
Merged-chr2-22816466-4	chr2	22815958	22816958	+	788.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	42131.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.05045251638017	4.98860556228123	5.28356516652882	4.86935609779813	4.84644682347069	5.06494072970141	-0.391571233915214	0.302356333005477	0.699046259697346
Merged-chr2-50669468-4	chr2	50668978	50669978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-240206.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.6269326124878	4.59945260504108	4.96109345339217	4.38103865585992	4.41856263294608	4.4249538373106	-0.785923731190345	0.0697030901194082	0.345567209627193
Merged-chr13-59003913-4	chr13	59003411	59004411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	196214.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	7.96771025827754	8.20525525106704	7.99978377090211	8.10059247486932	8.47972071769138	7.84718030124	0.162035923063998	0.527203553003133	0.849866385847389
Merged-chr5-139449292-4	chr5	139448807	139449807	+	875.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	11227.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	3.45678874021615	3.60789644709692	3.74471892283148	3.85621552225526	3.66868679226644	3.43351447350879	0.228368986797873	0.694551346083871	0.919210273513843
Merged-chr12-105010581-3	chr12	105010066	105011066	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-757.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	2.39727052746038	2.25291565886027	2.62902116768661	2.38516954179286	2.07525977667469	2.45808358459007	-0.749022470555152	0.415337480214211	1
Merged-chr3-79158421-4	chr3	79157938	79158938	+	978.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-12563.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.10154577111186	4.89168063305845	5.32944199638414	4.96064208093699	4.85165580042333	4.86788826978334	-0.463770282598936	0.231993705530192	0.628192660020054
Merged-chr5-64322566-2	chr5	64322100	64323100	+	742.875	f0_balb.idr|f1_balb.idr	intron (NM_001289514, intron 13 of 18)	Lx7|LINE|L1	92243.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.66594042887402	5.09509648637659	4.43534286743813	4.35962629415089	4.0649918563234	4.26783289830336	-1.35928961510082	0.00451355601235565	0.0569554092623732
Merged-chr10-26576381-3	chr10	26575881	26576881	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98270.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.16017229938686	2.32735537451958	2.14783187741448	2.29125372834737	2.19462148867116	2.42095423562501	0.573585059021847	0.5132995554429	1
Merged-chr3-68981012-4	chr3	68980500	68981500	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 5 of 19)	RSINE1|SINE|B4	23570.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	5.18641991008331	5.23286249267758	4.71927664988993	4.83643908219481	4.99256178306132	5.05715060654835	-0.247833600699778	0.535536007537195	0.853574947134468
Merged-chr7-109479252-3	chr7	109478752	109479752	+	760.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170913, intron 7 of 19)	intron (NM_001170913, intron 7 of 19)	14486.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	2.9464506581546	3.0811660176312	2.97005991152123	3.2100845041082	2.75532365045756	3.43437375394986	0.689567226244628	0.350126793649126	0.738177163457543
Merged-chr4-62369340-3	chr4	62368830	62369830	+	754.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175090, intron 1 of 4)	intron (NM_175090, intron 1 of 4)	8629.0	NM_175090	20529.0	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	2.85821117755572	2.78348341249622	3.09386524808543	3.1519618645325	2.90887086696957	3.1656874610088	0.767584220215505	0.272494274273714	0.669749152678636
Merged-chr13-95960922-8	chr13	95960413	95961413	+	818.144043	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029210, exon 13 of 13)	3' UTR (NM_029210, exon 13 of 13)	-68991.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.70095859173602	5.70207485220869	5.44825499222516	7.3626724596759	7.42703927885721	6.81306953023902	2.60751737970698	2.45634213744122e-16	8.697332620094e-14
Merged-chr9-85569053-4	chr9	85568574	85569574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	180260.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	5.87724574641634	5.90551420839606	6.19484007540505	5.80217513977358	5.80914366052994	5.88841997296633	-0.280825272436064	0.357834958062047	0.744373220152849
Merged-chr14-20829975-4	chr14	20829472	20830472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6690.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	7.95739418935011	7.92020316187903	7.707086224383	7.92431323655049	8.19106301237636	8.00208012462913	0.250912665552561	0.266214352702245	0.664003712819197
Merged-chr9-21526596-2	chr9	21526096	21527096	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198794, intron 1 of 6)	intron (NM_001198794, intron 1 of 6)	419.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	7.22863857806426	6.88884211541336	7.39445615117643	7.37183748069479	7.36540248961019	7.54965140976727	0.368649708995194	0.153787027519811	0.522858730489425
Merged-chr18-61639967-2	chr18	61639467	61640467	+	598.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045420, intron 1 of 2)	intron (NR_045420, intron 1 of 2)	314.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	4.44925781547233	4.87688662476078	5.02416043606139	4.78553572204162	4.50944088057547	4.99002462677796	-0.0745168097093445	0.867649877418136	0.969417251892744
Merged-chr2-6740164-4	chr2	6739652	6740652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-18490.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.67604708996094	4.65729618991503	4.46982374752262	4.36150805813721	4.41671882206562	4.61981030999039	-0.364884360724469	0.394901324972356	0.772579826044138
Merged-chr16-18418744-2	chr16	18418244	18419244	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-5250.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	4.2257856936357	4.13715705295663	4.19221909152935	4.01640517613352	3.44555608989709	3.92990919884971	-1.12153959703278	0.0447914306585009	0.266843657351797
Merged-chr8-70353354-4	chr8	70352843	70353843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-64.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.9815668028894	6.98614145480628	7.03079996329927	7.12108468839966	6.71336500985022	7.06285845292494	-0.041923337895935	0.871622275102732	0.970227816594767
Merged-chr1-156996657-4	chr1	156996156	156997156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57030.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.35160887127417	5.0705346995382	4.89108709652799	5.23934197947143	5.3720242856793	4.99750540744611	0.192448628587399	0.61937972428097	0.889749463061948
Merged-chr12-76551505-3	chr12	76551009	76552009	+	948.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3584.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	5.7337520767264	5.79901941462055	5.89131785426589	5.56524446431551	5.45580991475879	5.76038657366739	-0.399217671619359	0.210112501915082	0.602074559520288
Merged-chr3-109451633-4	chr3	109451129	109452129	+	963.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	110946.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.32547697687777	6.61222005270486	6.50897537116272	6.127658920802	6.4515831785767	6.32909517979181	-0.282858107334671	0.321717577409009	0.71514950259267
Merged-chr7-25084821-4	chr7	25084301	25085301	+	754.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7994.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	3.26161530704076	3.42743055380594	3.47334035465547	3.535253047797	3.12146254695784	3.59569222958969	0.15011784487459	0.812816665755511	0.955806234089663
Merged-chr2-159591779-8	chr2	159591268	159592268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-355573.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	5.77420697616119	5.7303188673154	5.85407673151047	5.69336415195273	5.24943186493737	5.71900906244259	-0.416002093374264	0.220153830720765	0.614507907782981
Merged-chr16-91734965-4	chr16	91734461	91735461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	Lx8|LINE|L1	5590.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.95261921898982	6.23595732715034	6.20895307223224	6.01086344088365	5.98792865919278	6.03510935320857	-0.217241338287866	0.45850231634842	0.813056725672258
Merged-chr2-92457140-2	chr2	92456640	92457640	+	844.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	2654.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	2.77320363220822	2.69790761617141	2.98335276602496	2.68883573743133	2.73178931728908	2.88263515838157	-0.262773281694958	0.719115499274953	0.92766367653205
Merged-chr10-13185085-2	chr10	13184585	13185585	+	643.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_181470, intron 4 of 10)	Lx9|LINE|L1	-7062.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	4.82875207517197	4.76238626636194	5.09422742065139	4.66161632543654	4.70111961461974	4.99587314532323	-0.243979298636366	0.548491544814453	0.859764603751126
Merged-chr16-49781818-4	chr16	49781325	49782325	+	962.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73829.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.11626897765796	3.75242146000395	3.95933463110511	3.96730645154336	3.84039686807029	3.87874291607634	-0.171874265703165	0.740714760986592	0.934646495187849
Merged-chr3-27317047-4	chr3	27316534	27317534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	-43.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	7.28952239213224	7.25630210566189	7.05001785191386	7.25667547345242	7.4700139459909	6.96708960271817	0.0763065827354343	0.770629439953809	0.943422411129892
Merged-chr16-4782683-4	chr16	4782192	4783192	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	6770.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	4.43898193596814	3.96872914328479	3.94589549261953	4.24818002007316	4.10521542591106	3.96426283692083	-0.0911903923221842	0.860851551268031	0.9676427717189
Merged-chr8-25599918-2	chr8	25599418	25600418	+	609.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1683.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	3.60084892436007	3.48516882351468	3.76773701964049	3.60034769158233	3.52503075076118	3.58196674939139	-0.170233113228098	0.761972373374479	0.941355820818144
Merged-chr4-63396914-3	chr4	63396428	63397428	+	915.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 2 of 21)	intron (NM_001045514, intron 2 of 21)	1312.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	3.80774167141716	3.23405690189683	3.60660742419968	3.58840274321278	3.39642600372605	3.82643480368181	0.130671215220843	0.835705970819845	0.961816681235686
Merged-chr3-95930202-4	chr3	95929723	95930723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253758, intron 1 of 4)	CpG	966.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	6.12151941965831	5.8418918659368	5.54991730194589	5.93798710665169	5.52202187343421	5.45734084228672	-0.375064953947678	0.295297959711327	0.692165401824907
Merged-chr10-20919808-4	chr10	20919309	20920309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B2|LTR|ERVK	-32738.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.95832832878066	4.8245936848906	4.89860937396582	4.81025113024848	4.4023462307357	4.48085245247219	-0.742708787139435	0.0771440878417735	0.366130804308595
Merged-chr2-38286113-4	chr2	38285617	38286617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	1267.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	7.09558720467679	7.52890779809701	7.23536729944758	6.98423459758922	7.30279266401373	6.56518928610029	-0.45334786311446	0.135181459395585	0.491294119824757
Merged-chr5-113918882-4	chr5	113918380	113919380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10174.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	7.35977192862809	7.51615098484365	7.34114994710323	6.43962932259592	6.74628564687227	6.57478766162887	-1.23542660515959	1.31294634493651e-06	6.89259555012473e-05
Merged-chr7-126588037-2	chr7	126587537	126588537	+	549.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_138310, exon 3 of 4)	exon (NM_138310, exon 3 of 4)	-2220.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	3.33149802446183	3.24596034306068	3.73687268017035	3.35939654084341	3.25607754464729	3.29074110209679	-0.558847631980646	0.376444202313757	0.759220718571954
Merged-chr9-57723383-4	chr9	57722891	57723891	+	686.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153799, intron 3 of 6)	intron (NM_153799, intron 3 of 6)	14822.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	3.5289237989781	3.46544815898845	3.70462554590608	3.54442831243954	3.25899470245246	3.91329991282865	0.0899370177267566	0.884614811037662	0.973538624783452
Merged-chr12-3238774-6	chr12	3238248	3239248	+	926.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015551, intron 4 of 6)	intron (NR_015551, intron 4 of 6)	2957.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	4.70776837288064	4.34643796083568	4.74351149676941	4.8351943754847	4.57176725132894	4.69398619566769	0.229960897706342	0.594101456690016	0.87882660002802
Merged-chr19-12437998-2	chr19	12437509	12438509	+	884.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER12C|LTR|ERVK	10104.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	6.14476767850857	6.16362703679616	6.21190402889665	6.20134705330905	6.09586901778735	6.18974681676944	-0.0199991727228752	0.942706365444569	0.987202156853573
Merged-chr11-78600230-4	chr11	78599725	78600725	+	850.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49490.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	5.2427706273497	5.34805531325805	5.40232279245016	5.15754239516782	5.31245247415309	5.25082537865341	-0.168682637753238	0.625372051667803	0.892493785592319
Merged-chr16-65470781-4	chr16	65470303	65471303	+	973.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-49826.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.84902716288148	3.68280193412454	3.61767001185849	4.07286456558294	3.64895591136365	3.99522348763355	0.609445640188771	0.272084974338453	0.669529543069504
Merged-chr11-61175255-4	chr11	61174754	61175754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	-195.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	7.40082422124417	7.58020744918889	6.98219119456152	7.2188032155252	7.30383296971419	7.28614630259334	-0.12754161109329	0.628740705329041	0.893882423650945
Merged-chr10-19934250-2	chr10	19933750	19934750	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-276.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	6.49221158781586	6.19961274379533	6.21904691670263	5.82619588843107	5.48581531361052	6.07061425079233	-0.885375175305775	0.00664119286458578	0.0751814036243104
Merged-chr1-149959954-4	chr1	149959482	149960482	+	898.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1308.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.74376403196796	7.26072750009491	6.23132485744133	7.13870493090285	7.11981613090526	6.81191606253219	0.316240813458423	0.355070335494946	0.74208656659542
Merged-chr17-7925906-4	chr17	7925400	7926400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-100.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	7.21960135743957	7.30769583127336	6.80811646968907	7.45820658418196	7.69404709277022	6.96140409678971	0.414057557910119	0.169088346841428	0.545689142612633
Merged-chr9-99009170-3	chr9	99008598	99009598	+	839.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080776, intron 7 of 7)	ID2|SINE|ID	22725.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	6.22049470072245	6.74929900259933	5.81488253312695	6.11413284576177	6.53082486552012	5.26929231691712	-0.420521279585041	0.604841655355532	0.883235893698306
Merged-chr18-12132900-4	chr18	12132361	12133361	+	951.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4011.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	5.00289862294627	4.98259134793862	5.2465820720852	5.47659128726391	5.14217389029519	5.45737801219252	0.583479933566013	0.112784495101224	0.448540764710779
Merged-chr19-34879098-6	chr19	34878569	34879569	+	910.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001114339, exon 1 of 7)	exon (NM_001114339, exon 1 of 7)	386.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	6.33376776070105	5.85890859655792	5.88244964842788	6.10981777940299	5.76835847876597	5.91949255801329	-0.1978508382384	0.547702057475135	0.859417530330976
Merged-chr10-61695486-4	chr10	61695008	61696008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-6.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	6.99868066442233	7.08753791113621	6.84395923008373	7.01919639660188	7.08285261148437	6.97491653824465	0.064217522134111	0.79256373136079	0.949977808464961
Merged-chr13-24757982-4	chr13	24757487	24758487	+	932.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020567, intron 2 of 6)	intron (NM_020567, intron 2 of 6)	3950.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	6.2550000288826	6.60242798407072	6.18842709889937	6.49003649450414	6.83619925455183	6.66347222748722	0.487565542153348	0.0956456764283044	0.412335394241042
Merged-chr5-36668748-1	chr5	36668248	36669248	+	570.0	f0_balb.idr	intron (NM_001081232, intron 2 of 8)	RLTR26_Mus|LTR|ERVK	27273.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	4.01964062611184	3.65986031725394	4.19996704905568	3.8706641169603	3.33366751428227	3.86209203834405	-0.837312733183737	0.169324454423645	0.546091054406303
Merged-chr1-171440478-2	chr1	171439978	171440978	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	2917.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	2.80840633970668	2.77160599298596	3.06704558982137	3.22226061528104	2.96127689599859	3.35856803587886	1.40262919501757	0.0490654724171303	0.281464310850367
Merged-chr17-10328598-4	chr17	10328165	10329165	+	981.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	4063.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	4.49023461564377	4.32945269099754	4.14347928681145	4.33671833987486	4.13645757187448	4.06154333222921	-0.406161108741756	0.393985203641991	0.772046311610617
Merged-chr13-41461767-4	chr13	41461271	41462271	+	858.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	25589.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.56330487428755	5.83518604543327	6.14536131556327	5.36687606782923	5.52385220229426	5.89425140549926	-0.466130402732425	0.196793975226403	0.584752815435436
Merged-chr12-85362675-3	chr12	85362174	85363174	+	847.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 1 of 4)	L1MC3|LINE|L1	12043.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	4.22715651489245	4.16349401715994	4.48468229786917	3.96884360805087	3.98457236910599	4.30943469341946	-0.569102038714655	0.245300376412664	0.642393755173178
Merged-chr16-35870378-9	chr16	35869879	35870879	+	819.4259030000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	1003.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	7.43619202191314	7.64540396582528	7.17688843399139	8.01207153168658	8.23252832903142	7.61082826735906	0.782548829212451	0.00432564769906539	0.0552037567091768
Merged-chr17-28410816-2	chr17	28410316	28411316	+	994.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 7 of 10)	intron (NM_010220, intron 7 of 10)	-45600.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	2.69470515715027	2.65369307813174	2.63138308458725	2.69094447738758	2.73914847514498	3.00493204607581	0.801662087568356	0.282682235298945	0.680597768538116
Merged-chr14-64658537-4	chr14	64658048	64659048	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	6017.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.78081756505517	4.64981550930223	4.71109216348813	5.00379627388798	4.65319747475919	4.5235663476097	0.0756044337108334	0.857544775711455	0.966767080388296
Merged-chr5-120500275-4	chr5	120499776	120500776	+	994.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	3347.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	4.93187114155348	4.89703207789064	5.31582998255132	5.02366553918507	5.01487197367079	5.26089888226755	0.101937249031283	0.79182328624844	0.94981786289531
Merged-chr13-55429478-4	chr13	55428978	55429978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2674.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	7.20582918791815	7.1675520800549	7.39263014612296	7.59827143216708	8.11747817010023	7.20353832408621	0.659615932522211	0.0279715043410229	0.199798517744685
Merged-chr18-36491763-4	chr18	36491241	36492241	+	999.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24064.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	4.59408399834912	4.28123314972289	4.24301566155472	4.22253050763941	4.14111714948948	4.06699221202767	-0.651636268214841	0.169068463526831	0.545689142612633
Merged-chr16-91003494-2	chr16	91002994	91003994	+	904.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045515, intron 2 of 32)	MER119|DNA|hAT-Charlie	7601.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	4.96013244154408	4.9713246065182	5.45547390818459	5.00550560078105	5.10087321014071	5.29308583099884	-0.00581845338506465	0.988130471825326	0.99731652667245
Merged-chr4-136053047-2	chr4	136052547	136053547	+	878.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025919, intron 1 of 5)	CpG	324.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	7.42776886373169	7.66318395867554	7.24698136125671	7.55470186705755	7.32397960725454	7.07164490810634	-0.185980684366671	0.482219900161336	0.825427202167635
Merged-chr4-132569751-2	chr4	132569251	132570251	+	800.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	5684.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.37366526425728	3.01337712608743	3.26376384929964	3.19549326376898	3.23213376220978	3.16157909826322	-0.110955996084115	0.86437407149058	0.968278303984855
Merged-chr4-150031526-5	chr4	150031160	150032160	+	699.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22637.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	3.01525633521789	2.90719714958944	2.71127755992965	2.96277876237485	2.8226474573595	3.03618833543909	0.243151227621033	0.736079846797924	0.933046642264646
Merged-chr11-51756564-4	chr11	51756070	51757070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175255, exon 1 of 23)	5' UTR (NM_175255, exon 1 of 23)	264.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	8.80054028527672	8.75963894249081	8.27921214593263	8.53066931827253	8.68387610667133	8.0885688956547	-0.24079940330394	0.366614790848344	0.751704072179051
Merged-chr15-61994181-3	chr15	61993719	61994719	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8878.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	3.0675771342299	3.23398725983212	3.15010538907735	2.91014600018264	3.06469753461004	3.38434323381648	-0.103703983247498	0.878678664484707	0.972000507462599
Merged-chr19-38223574-2	chr19	38223073	38224073	+	595.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_001081075, intron 1 of 13)	intron (NM_001081075, intron 1 of 13)	559.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	4.39799357951064	4.72036002508361	4.51514058558826	4.99823784437055	4.96476359489375	4.4456109598181	0.654783065481961	0.142813219309948	0.504423225755249
Merged-chr15-59887978-4	chr15	59887387	59888387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-92928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.12712730206984	6.15526436293684	6.63747124151953	5.85086606781073	6.03794944165816	6.06866977026815	-0.555832176109939	0.0782634760483275	0.369397427163379
Merged-chr14-66873495-4	chr14	66872960	66873960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4610.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	5.7863431066026	5.41837540725974	6.31801849246537	5.78128178504189	6.03393188451688	6.09282599328617	0.159596929466939	0.668465749586962	0.909204788456481
Merged-chr3-98066647-4	chr3	98066161	98067161	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 2 of 33)	B3|SINE|B2	53123.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	3.96317527311634	3.58214065399289	3.92856245197602	3.41949322860608	3.50191609509434	3.3631050309108	-1.40158223163759	0.0188874098488995	0.155499046960775
Merged-chr2-18906824-2	chr2	18906324	18907324	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 2 of 9)	intron (NM_008845, intron 2 of 9)	91297.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.12398258596947	2.62514166068202	2.67062414520446	2.72845484981032	2.66989616771104	2.87277015947819	-0.372671796773743	0.634524288059813	0.896350313439852
Merged-chr15-12014275-4	chr15	12013778	12014778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-18271.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	4.36254038668275	4.15296693105746	3.72927027921467	3.74350362422087	3.88832628358292	3.91177044227611	-0.797673277925537	0.144950015435837	0.507831616184637
Merged-chr19-29384237-2	chr19	29383737	29384737	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 6 of 6)	PB1D10|SINE|Alu	16799.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	7.24139013084991	7.00653227667861	6.71080722853665	7.41480919687515	7.55717204546484	7.04835668546258	0.526510639204211	0.0631891538403817	0.327325893985747
Merged-chr14-72603038-4	chr14	72602509	72603509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106994.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	8.60465637972836	8.76609556935365	8.27644790862142	8.73031478213436	9.25217637950284	8.48560079423496	0.41546534415161	0.13605108743987	0.492921904596115
Merged-chr10-37335310-4	chr10	37334783	37335783	+	627.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-196357.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.94714104986594	2.99585713166493	3.21072569831089	3.04470914401529	2.81901713787134	3.38617097154501	0.200328043177183	0.778381264749877	0.945441651271158
Merged-chr1-172526823-3	chr1	172526324	172527324	+	832.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027972, intron 1 of 11)	MLT1N2|LTR|ERVL-MaLR	5694.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.17026237843609	4.23732378030206	4.20658889713408	4.81677528869537	4.74030130503393	4.82270577186111	1.47173015098066	0.000627666539883288	0.0125515206562385
Merged-chr15-36790556-1	chr15	36790056	36791056	+	556.0	f1_balb.idr	intron (NM_001356569, intron 3 of 6)	intron (NM_001356569, intron 3 of 6)	376.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	3.21504287405462	3.18395011637466	3.0550735087862	3.12397075856437	2.92771050328358	3.51214276717456	0.206070023071915	0.765790664152614	0.942281613989481
Merged-chr19-31950985-4	chr19	31950487	31951487	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	82226.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	4.54616336438501	4.3694376311605	4.12983087633626	4.26640786252378	3.97094900007563	4.09992004141507	-0.691262545671647	0.155029733362459	0.524424135755442
Merged-chr14-50926182-2	chr14	50925682	50926682	+	888.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009687, exon 4 of 5)	exon (NM_009687, exon 4 of 5)	1233.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	5.76844681323799	5.98674103791279	6.07146571710832	6.28437070717102	6.7726872737452	6.24040962948852	0.880899937035843	0.00538319666040897	0.0644496442761596
Merged-chr7-137414233-2	chr7	137413733	137414733	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-3477.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	4.36864223973106	3.97208224420295	3.9068413327292	3.74609055169284	3.51312736105166	3.97709436100543	-1.10119518404359	0.050027614376562	0.284823656315085
Merged-chr17-26561467-4	chr17	26560951	26561951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-61.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	7.01910157657643	6.81883218226273	6.68436500009695	7.09786619622235	6.79182947879122	6.82312162628126	0.0880940162122939	0.740558595218433	0.934580867046263
Merged-chr13-98960975-2	chr13	98960482	98961482	+	923.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23583.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	4.20387058569132	4.39597583643552	4.5814075701854	4.91930174879291	5.09081657156247	5.08519567329819	1.5125779490757	0.000289219330480434	0.00675803483589328
Merged-chr13-67278531-3	chr13	67278026	67279026	+	900.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033540)	promoter-TSS (NR_033540)	-68.0	NR_033540	100038627.0	Mm.387089	NR_033540	ENSMUSG00000114442	F630042J09Rik	-	RIKEN cDNA F630042J09 gene	ncRNA	2.99799033666009	2.70338208719505	2.77734836348414	2.5509656955439	2.47711962365703	2.59643730027392	-1.71518184135366	0.0316548223323048	1
Merged-chr18-74208334-4	chr18	74207822	74208822	+	862.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-504.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	5.14936833932979	5.51965193268834	5.7174914308461	5.44640923015707	5.70876965908214	5.39315836889511	0.111044254875926	0.761124146191229	0.941142869178598
Merged-chr16-92398076-6	chr16	92397626	92398626	+	924.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1952.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	6.57726232263384	6.30930189458552	6.47402448587629	5.95128207320164	5.72985678222969	6.08741746237714	-0.911256809762074	0.00210625400069389	0.0321160313156931
Merged-chr8-77483880-4	chr8	77483362	77484362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-33194.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	5.28785429449838	5.25194844926961	4.96262028685674	4.93497602051253	4.75838900164204	4.52258015832151	-0.923597366885382	0.0221866884930093	0.172905308244481
Merged-chr5-115160921-3	chr5	115160430	115161430	+	881.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2754.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	4.72209465142931	4.44071555866548	4.53184915505865	4.57413048223595	4.34886250409885	4.38087932581934	-0.335356821316383	0.443422038729755	0.803800173379074
Merged-chr8-126583818-2	chr8	126583318	126584318	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9618.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.58835583311604	7.0743114119733	6.87716739635866	7.05739918577881	6.69388951412227	6.54674958682459	-0.662268390040227	0.0340386212837222	0.225697692690508
Merged-chr19-46502947-4	chr19	46502438	46503438	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_053100, exon 1 of 6)	exon (NM_053100, exon 1 of 6)	1290.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	8.10698604940211	7.95422281852162	8.17243213947634	7.97346802169786	8.05239283452585	7.87445914491403	-0.149619772408042	0.488754018541461	0.829423271678195
Merged-chr9-64172907-4	chr9	64172374	64173374	+	951.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	57.0	NM_026507	68014.0	Mm.335237	NM_026507	ENSMUSG00000032400	Zwilch	2310031L18Rik	zwilch kinetochore protein	protein-coding	7.36696923860542	7.50210196452631	7.41655774958608	7.66299640823307	7.70374789654789	7.45234783794825	0.272238690495554	0.234183726712654	0.63036877369004
Merged-chr18-62186632-4	chr18	62186116	62187116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6516.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.44319022864198	6.41578615094787	6.36322312536083	6.53247107619639	6.45966791091769	6.63452965295211	0.20693717047033	0.432563997552413	0.797386699146392
Merged-chr10-128194364-4	chr10	128193864	128194864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285779)	promoter-TSS (NM_001285779)	-271.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	3.58244146367855	3.73170632493168	3.60460167378657	3.77788361308559	3.39696381480553	3.77892998794945	0.0453114692443994	0.937247110828536	0.986057836872162
Merged-chr10-94526382-2	chr10	94525882	94526882	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	11525.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.4692910249193	4.14006921259809	4.16812762982953	4.19560388333187	4.33881416873664	3.98376635454892	-0.22000371566496	0.654935994330913	0.904043908222953
Merged-chr9-89255866-2	chr9	89255366	89256366	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	44482.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	4.34611666345634	4.63245459556542	4.53843047380441	4.2049408789347	4.25091755591143	4.35286549585319	-0.634784503583621	0.156772249916623	0.527613063058663
Merged-chr8-46889914-3	chr8	46889395	46890395	+	934.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96992.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.15493788895276	6.95114796284966	7.10121335388756	7.25784154548088	7.32690086029121	7.26762264486762	0.323976711601583	0.169283559186993	0.546001488209603
Merged-chr9-121331634-2	chr9	121331134	121332134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	L1M4|LINE|L1	34132.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.45340891630699	5.26700527681516	5.09081431760581	5.43364466828925	5.1410799871726	5.04605792720178	-0.132750775216145	0.721316306117276	0.928451291671431
Merged-chr6-72552892-4	chr6	72552384	72553384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	3237.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.83889579998418	7.13915276608651	7.32752509702992	7.11048343318225	7.10218464605446	7.12099814742448	0.000622064418053705	0.998078055505203	0.999579683478894
Merged-chr16-33756188-4	chr16	33755691	33756691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37846.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	8.28516394659832	8.47365357042693	7.78124865987223	8.03967063731605	8.43803611256438	7.73539198007694	-0.149878772668609	0.611422231307112	0.886096334104367
Merged-chr1-54438963-4	chr1	54438460	54439460	+	983.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033194)	promoter-TSS (NM_001033194)	66.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	5.31718726727103	5.49144372833517	5.33571692014504	5.37489784168325	5.40570189078702	5.36811281556707	-0.00644454917159488	0.984694766111259	0.996716154138789
Merged-chr15-81106398-4	chr15	81105891	81106891	+	892.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-1344.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	4.85012680538298	4.87799862246364	5.07418494526411	4.8893016808559	4.7533534298968	5.03899279217574	-0.0911167766295897	0.814537982633482	0.956366417809675
Merged-chr6-34861597-2	chr6	34861097	34862097	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-1549.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	3.91443324233809	3.98105317660164	4.03874623414079	3.73530630888501	3.59633849119863	3.76581370470556	-0.911339427223433	0.081721192995512	0.37819004598279
Merged-chr5-35728506-4	chr5	35728029	35729029	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	747.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	8.87153738343927	9.2193619173784	8.56782921574821	8.90414293757695	9.31243314582289	8.34801672678881	0.00590601776372772	0.984639997162887	0.996713348248997
Merged-chr14-31392983-4	chr14	31392482	31393482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	24695.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	8.74810038163298	8.84419873190903	8.29573856460623	8.54012750957728	8.7652134281526	8.15257376758945	-0.191741240202038	0.47374063120107	0.82109253543115
Merged-chr5-30516573-4	chr5	30516078	30517078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028483, intron 3 of 6)	intron (NM_028483, intron 3 of 6)	29258.0	NM_028483	73259.0	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	2.54609893844047	2.72962877453459	2.58643466848384	2.82039078220003	2.6200303724106	2.78762430771292	0.634567800136097	0.403861140049046	1
Merged-chr16-3699484-4	chr16	3698986	3699986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18638.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	4.97684387462315	5.42537553004792	5.68839507659041	5.49787436164668	5.65800201608228	5.62214376492449	0.399278321907931	0.285713852658015	0.683171305266476
Merged-chr15-81016383-3	chr15	81015852	81016852	+	735.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153049, exon 10 of 13)	exon (NM_153049, exon 10 of 13)	38587.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	1.8558579435342	1.78886997641902	2.02034214207146	1.69117036272064	1.61700383448094	1.89780360234773	-1.43783518324259	0.183421916380613	1
Merged-chr11-100624649-2	chr11	100624149	100625149	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028024, intron 2 of 3)	PB1D9|SINE|Alu	1694.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	6.72963529723132	6.84441269288222	7.16348782693767	8.15031549040827	8.25643366401044	7.43317803136075	1.58704848723543	1.10254703619808e-07	7.78783818234042e-06
Merged-chr7-6330707-2	chr7	6330207	6331207	+	736.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-273.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	3.81266486330499	4.19615264205362	4.21509799255112	4.11188435589181	3.86011782615812	4.32422064205097	0.0535126335371644	0.9186452758425	0.981830247255695
Merged-chr11-118419063-4	chr11	118418535	118419535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267592)	promoter-TSS (NM_001267592)	83.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	7.94138223804269	8.03365052109834	7.69663323853089	7.81196426683153	7.88251972248199	7.64047124996425	-0.16754805294024	0.468563256618923	0.818673566064062
Merged-chr16-93031801-4	chr16	93031276	93032276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-205702.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.49136896990939	7.51128581325867	7.13891713683099	7.15028620527309	7.44249809929579	7.17103060878351	-0.194078988960708	0.447570654477292	0.806548958484392
Merged-chr4-128722900-2	chr4	128722400	128723400	+	734.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-4671.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	3.09011957739911	3.12795678616938	3.29085046030448	3.28765345770379	2.79644184111917	3.41497854731392	0.0866734810901281	0.903654461635122	0.977858102400597
Merged-chr1-170608842-3	chr1	170608362	170609362	+	912.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19013.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.56275604822309	3.25750676815442	3.1042828755555	3.35020728392135	3.25999694853421	3.30092457118391	-0.102731286289482	0.873496973419408	0.970409437516545
Merged-chr15-59648499-4	chr15	59647968	59648968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-186.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	8.36984019901252	8.6421353329249	8.35372192507182	8.36891325725464	8.52626995842716	8.41510971805145	-0.0354891636382733	0.86909243911662	0.969772902205443
Merged-chr11-58026546-2	chr11	58026046	58027046	+	872.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	17482.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	3.31757819270387	3.44281424685172	3.46362238572285	3.29248057656453	3.29635240578527	3.53357581542211	-0.137239784272622	0.8189751331928	0.957177330711949
Merged-chr8-88288950-4	chr8	88288460	88289460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-106.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	6.11411038836936	6.26266578374845	5.70847432391588	5.93634877139511	6.11070022985029	5.87974849090376	-0.132107245315184	0.681580104092062	0.914739226459981
Merged-chr7-47035158-4	chr7	47034665	47035665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15475.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	7.20475468389364	7.37296679186932	6.83468390245235	7.32786097974815	7.58105324946882	7.02894197594275	0.261384264377754	0.360837427409168	0.746938274913623
Merged-chr10-70183396-3	chr10	70182888	70183888	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111121, intron 7 of 8)	intron (NM_001111121, intron 7 of 8)	-21276.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	3.17810509058483	2.88475780152985	3.16509809881544	3.21976057323066	2.8654772121258	3.18019772240931	0.0582859723181854	0.933175679532467	0.985356091252617
Merged-chr5-99219332-3	chr5	99218882	99219882	+	727.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	33545.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.05960197042693	4.00637191889258	4.41120139990305	4.0799399885014	4.1382005350701	4.13567940221094	-0.117244078182591	0.810532922771853	0.955054272231421
Merged-chr16-5011414-4	chr16	5010915	5011915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 5 of 10)	intron (NM_133185, intron 5 of 10)	2138.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	5.16779564434391	4.96741477788541	4.89725276730535	4.66336010352275	4.6283755855947	4.73189375434914	-0.791530209386735	0.0438178531345959	0.263229797388164
Merged-chr11-87444952-2	chr11	87444452	87445452	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	17361.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	3.20930819485079	3.34232070292293	3.32560067392747	3.25407854625951	3.12238451614886	3.45002596821887	-0.0757627065723632	0.903663094840917	0.977858102400597
Merged-chr5-122952348-3	chr5	122951841	122952841	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003953, intron 6 of 22)	CpG	36758.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	3.06077777041002	3.18321849664979	2.92334693153896	3.32226610615957	3.11394465085069	3.41024004700199	0.919978776248681	0.171961917494841	0.550436900592833
Merged-chr1-66649990-8	chr1	66649505	66650505	+	937.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175510, intron 47 of 64)	intron (NM_175510, intron 47 of 64)	-50826.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	3.26947645438581	3.41145836769841	3.4313667928849	2.976231909905	3.33024998785546	3.28315376538418	-0.653563900325679	0.316933641166131	0.710858116721964
Merged-chr11-21421786-4	chr11	21421264	21422264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50497.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	4.74369828192246	4.66381164954166	4.97612506797718	4.66535719529041	4.53072669542231	4.90488309601903	-0.219465169495362	0.59866315979385	0.880808927175713
Merged-chr3-142598105-4	chr3	142597592	142598592	+	833.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	3245.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	4.35592130934117	4.05651483676237	4.37021865053033	4.66608860282479	4.84288238665832	4.83661662986813	1.30005715809854	0.00313340397740332	0.0435484012279565
Merged-chr1-170176204-2	chr1	170175704	170176704	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1240.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	5.2687061309664	5.17020809328436	4.71161368794506	5.17063576534322	5.32058351414183	5.2029825575387	0.305816307382754	0.43403200076981	0.79814689082248
Merged-chr1-184480829-4	chr1	184480338	184481338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76853.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.80908805402307	4.33802399827307	4.63246707826123	4.34435500279437	3.76945738817138	4.23300450893625	-1.24819927335811	0.0155950191029483	0.136391670119626
Merged-chr5-143033404-2	chr5	143032904	143033904	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	B1_Mur2|SINE|Alu	73049.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	5.02845030374101	5.19139191812191	4.84784493975424	4.7217780659429	5.00930540559029	4.87543706394773	-0.34477617304085	0.381152310730778	0.763032822617589
Merged-chr8-80963280-2	chr8	80962762	80963762	+	602.0	f0_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51644.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	2.88070747325261	2.6747031210658	2.72548702254848	2.78131541843474	2.87465533956446	3.15188564598905	0.867421469619053	0.23941384078697	0.636282788382435
Merged-chr4-46451576-4	chr4	46451064	46452064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	CpG	638.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	7.04768038601561	7.23919087936776	7.32109813754122	7.21356544049619	7.01580006847048	7.05726699001587	-0.15962785217377	0.514485778870023	0.843107848235413
Merged-chr11-115634271-4	chr11	115633773	115634773	+	968.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5978.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.61151104962489	6.23042409738517	6.74208269087537	6.67449058622868	6.50855523518132	6.72536647224672	0.154395098742011	0.592028767727397	0.877880937493524
Merged-chr10-62231267-4	chr10	62230770	62231770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197996)	promoter-TSS (NM_197996)	-52.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	5.91825910073411	6.05667929821314	6.06727035764195	5.95339509607029	5.85898722170284	5.76867445428262	-0.258302475273831	0.384694422333118	0.765859059066255
Merged-chr17-86446861-1	chr17	86446361	86447361	+	725.0	f1_balb.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-159683.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	4.2947375737484	4.29323194787888	4.04564252932392	4.15681647468792	4.0690393385972	3.79157744007085	-0.567082633975741	0.261874900473756	0.659718531523246
Merged-chr19-47228846-4	chr19	47228386	47229386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163480)	promoter-TSS (NM_001163480)	43.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	5.25376052987128	5.05654105466968	5.21553466977746	5.39281778863801	5.62592306800509	5.4943426402334	0.666110903735609	0.0534772954476278	0.296510881562352
Merged-chr16-57424367-4	chr16	57423871	57424871	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	71094.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.82892650484962	5.71206045693659	5.33616199594238	5.36427635124156	5.33288941855916	5.08116999907276	-0.728086294828337	0.0430818018922086	0.260330469996143
Merged-chr4-45499418-4	chr4	45498934	45499934	+	883.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	31394.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	4.50148125410399	4.40898949133396	4.14595247962944	4.51824705682239	4.43219337772905	3.94540837299312	-0.0922482530468062	0.855111538767025	0.966071348898544
Merged-chr9-118681865-3	chr9	118681374	118682374	+	827.555542	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-29818.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.75343601669725	2.86431514409886	2.9766817105985	2.87640894658823	2.77932102614608	2.87133322827823	-0.115906390913673	0.869436082637885	0.969788171765313
Merged-chr5-99236437-2	chr5	99235935	99236935	+	854.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	16492.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.36490357637368	5.52489225696406	5.54702843768736	5.48633577860548	5.42891504492359	5.3751877405344	-0.0870579348265525	0.792510839783185	0.949977808464961
Merged-chr17-81538356-4	chr17	81537863	81538863	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	ORR1E|LTR|ERVL-MaLR	200024.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.2186809759386	5.15202932186572	5.24111185483918	5.42985437734117	5.18763546746494	5.36685877489333	0.250155032289068	0.473642976338245	0.820993116047837
Merged-chr7-29906925-1	chr7	29906425	29907425	+	796.0	f1_c57bl6.idr	promoter-TSS (NM_001285798)	promoter-TSS (NM_001285798)	-393.0	NM_001285798	22689.0	Mm.86747	NM_011754	ENSMUSG00000062040	Zfp27	Zfp-27|mkr-4|mszf76	zinc finger protein 27	protein-coding	5.72377215169155	5.96797622059552	5.87979119487777	6.36858233103869	6.48027167756667	6.40982682030705	0.950080657360919	0.000920191360877813	0.0168799124241449
Merged-chr2-27744543-3	chr2	27743970	27744970	+	904.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	33887.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.25777784247122	5.58200391074609	5.70479519232269	5.31326437042596	5.54665065814505	5.66540153195399	-0.0151693146720014	0.965681551740196	0.992029810084177
Merged-chr17-56267050-2	chr17	56266596	56267596	+	816.150024	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	9671.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	7.27765029854917	7.39096126609036	7.06184648875332	7.24655762204851	7.64200728773895	6.86992239400876	0.074178600244924	0.80088540493003	0.95270876613224
Merged-chr1-65536469-4	chr1	65535972	65536972	+	867.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	225215.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	3.3792941772067	3.43538124407074	3.6170179358059	3.38858054356519	3.57856330793521	3.73553167682522	0.347535378517816	0.55220978009591	0.861546661145201
Merged-chr13-100602413-4	chr13	100601916	100602916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	14528.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	7.34988002334218	7.21888365695077	6.30148473919366	6.53430652830551	6.64384943336271	6.61994986885749	-0.688797754764319	0.0429513295080549	0.259915257955647
Merged-chr8-14851438-4	chr8	14850945	14851945	+	900.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37091.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.51170259094437	3.32601840358721	3.38853337604041	3.1329347613628	3.18227327145675	3.2330304416515	-0.941473065213948	0.129925811783946	0.482137076320509
Merged-chr5-146807244-1	chr5	146806744	146807744	+	683.0	f1_balb.idr	Intergenic	L1MB4|LINE|L1	-12288.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.91095204302617	6.80794236902906	7.28552034887759	7.42459444524978	7.62005651018502	7.33188984914069	0.690522902734328	0.00847291615160837	0.0897378253866452
Merged-chr1-177702482-5	chr1	177701979	177702979	+	822.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27335.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.8049482378194	4.45815016703762	4.48851830000936	5.05440278044108	4.72544483552031	4.68689905276514	0.545800671317841	0.205598514878171	0.596135891490343
Merged-chr10-57804927-1	chr10	57804427	57805427	+	558.0	f0_balb.idr	intron (NM_020561, intron 3 of 7)	AT_rich|Low_complexity|Low_complexity	10383.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	3.52166215652572	3.80031455713412	3.90720534348059	3.65401119410526	3.73011401992614	4.06501455903495	0.234790417478802	0.676146978665041	0.912421384593547
Merged-chr7-51861289-2	chr7	51860789	51861789	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-726.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	4.68651898254255	4.48620707678337	4.62398323479393	4.56875415322429	4.39315317558616	4.72812565125611	-0.0991083185175871	0.816732402604174	0.956754861188725
Merged-chr2-155019456-3	chr2	155018973	155019973	+	890.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	5903.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	3.22570522225621	3.22988828213392	3.03620742834227	3.3495331895774	3.63056502768883	3.3571462717582	1.13886226010532	0.0775842432431991	0.367590804679428
Merged-chr6-97488610-3	chr6	97488120	97489120	+	871.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-800.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.45704748963741	7.48427753936263	7.45402861826075	7.65024425311184	7.88090439423959	7.65778449003476	0.397943090158908	0.0770569647378884	0.365926031383987
Merged-chr10-24638137-4	chr10	24637632	24638632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	42690.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.56643147608387	6.84245589717156	6.95709976472926	6.73168431970491	6.9969706963866	6.81782039218266	0.102103051225302	0.704077958257987	0.922364738817472
Merged-chr2-71366774-2	chr2	71366274	71367274	+	835.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172436, intron 1 of 17)	intron (NM_172436, intron 1 of 17)	780.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	5.58984969183532	5.39652615599288	5.67012519787379	5.91586567737747	6.05382002056414	5.88472886850607	0.743174343153575	0.0176332631694742	0.14856506296128
Merged-chr13-43790814-4	chr13	43790310	43791310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5698.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.89600453402836	7.8427940508324	7.39280765963648	7.6577649643146	7.78714735658903	7.25852867606434	-0.203924735076208	0.455990647500777	0.811256559277932
Merged-chr19-45016768-4	chr19	45016150	45017150	+	919.380554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145503, intron 1 of 4)	intron (NM_145503, intron 1 of 4)	1440.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	4.75490373246247	4.40629211716641	4.5700581494739	4.12446661644815	4.0592195698842	3.99394046722393	-1.40427204074511	0.00297599915460069	0.0418571564665338
Merged-chr3-106785938-2	chr3	106785438	106786438	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	Lx9|LINE|L1	4211.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	6.84722499434482	6.98831191945107	6.81978018404647	7.24566918586761	7.25474470163238	6.95268772770879	0.418214267934481	0.095475339177959	0.411857121795822
Merged-chr10-128804481-4	chr10	128803959	128804959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178066)	promoter-TSS (NM_178066)	-12.0	NM_178066	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	7.71726473652205	7.47443807988402	7.70560099588143	7.52403674244729	7.63092179096099	7.19803843064743	-0.235251489709754	0.344228810209341	0.732980075743821
Merged-chr3-83817852-4	chr3	83817334	83818334	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23774.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	4.25544986650489	4.23086977860735	4.39894871842352	4.10950944321846	4.12785609099185	4.29628971599283	-0.321878444793018	0.485798869035908	0.827573679263522
Merged-chr11-46813384-3	chr11	46812875	46813875	+	761.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178759, intron 1 of 8)	B3|SINE|B2	2576.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.86086104889641	7.00118711201695	6.9107156534452	7.1147044614684	7.35854588996923	6.66637101723633	0.25188225814812	0.375944125838698	0.758951282467405
Merged-chr15-88716547-2	chr15	88716047	88717047	+	832.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 3 of 12)	intron (NM_001033274, intron 3 of 12)	17672.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	2.74086827363993	2.66833241532153	3.16994406925588	2.81273578571828	2.9759646952382	2.96302348968657	0.224856889159883	0.763673615153946	0.941793063578371
Merged-chr7-34133314-4	chr7	34132814	34133814	+	983.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207212)	promoter-TSS (NM_207212)	-46.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	4.33956411181613	3.96328170983111	4.21066537068752	4.40715457331913	3.80640719620871	4.13982351876547	-0.114257689918377	0.828701175985536	0.9598352930318
Merged-chr12-76370441-4	chr12	76369938	76370938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	172.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	8.76664476363313	8.96040378333491	8.89763260495353	8.67781632789159	8.76154380999163	8.94082640599097	-0.112066541671949	0.586402235545687	0.875537170614123
Merged-chr8-119813187-4	chr8	119812689	119813689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	27390.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.16477727713173	7.00128594651224	7.04839113046139	7.19047245132135	7.29382916114738	6.90987265420486	0.116691690880655	0.643317808397604	0.899740952048069
Merged-chr2-33370703-2	chr2	33370203	33371203	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	791.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	1.92462720340651	1.89626879544221	2.12888390564033	1.96540776644649	1.76337833577673	1.93846059339113	-0.788626183331147	0.424192892375928	1
Merged-chr11-87423732-2	chr11	87423232	87424232	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-3859.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.49737463543303	5.69669988437757	5.65129918952471	5.46744079465527	5.64544991298471	5.99674436583863	0.174804637967633	0.607038309130961	0.884425830858661
Merged-chr10-68844295-2	chr10	68843795	68844795	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	120549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	2.90194486804509	2.63636299076956	2.68347683702231	2.9949865523598	2.62393317353249	2.94580190607359	0.575490390205616	0.452025517760633	0.809286173636239
Merged-chr6-120795697-4	chr6	120795186	120796186	+	922.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007510, exon 9 of 9)	3' UTR (NM_007510, exon 9 of 9)	21918.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	3.73102888941358	3.92575178543869	4.20875522118708	4.03058203908321	3.74371497145365	4.43382424306052	0.373325810412451	0.506291597460086	0.838365362350894
Merged-chr5-123376796-4	chr5	123376295	123377295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18003.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	7.52138103285693	7.61007442397454	7.25525681382399	7.80658525444313	8.21782353624072	7.70502794416918	0.663129988837076	0.011011587806037	0.107566588185575
Merged-chr10-20834734-4	chr10	20834240	20835240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-109662.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.51066139895706	7.71963539808346	6.98237378080616	7.39665340326236	7.69786171073914	7.19306346311734	0.00478143913450663	0.987172790490548	0.997161899445921
Merged-chr7-28372839-4	chr7	28372338	28373338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-176.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	7.32674932135633	7.00015147032306	7.05795113510503	6.87955112946739	7.21816662605836	7.2846255082985	-0.00143608845763783	0.99566885724297	0.998961028701257
Merged-chr4-132779846-2	chr4	132779346	132780346	+	848.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	11486.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	4.5703481798806	4.60380899332698	4.39896704918292	4.75682570599041	4.54969706888036	4.93878002616427	0.506976351253688	0.236200233879521	0.63260425713426
Merged-chr7-97944153-3	chr7	97943640	97944640	+	787.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177696, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	24182.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	4.34046142604417	4.39884731468073	4.36452493527477	4.2548479097685	4.28868931191234	4.20502159318269	-0.307459231275168	0.491418491065217	0.830520225936327
Merged-chr7-127274524-4	chr7	127274020	127275020	+	877.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-461.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	6.85396410682943	6.84821853047501	6.27679217870097	6.74241537243648	6.76131507592129	5.88409202664564	-0.251612625618553	0.490735567546106	0.830165664658055
Merged-chr12-111160170-4	chr12	111159655	111160655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130987, exon 4 of 4)	non-coding (NR_130987, exon 4 of 4)	-6215.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	6.74419189128147	6.39294133360234	6.23844054051686	6.3378298965675	6.27056887954053	5.94803157183275	-0.458735952192407	0.138766039335371	0.497691577630065
Merged-chr4-54494981-1	chr4	54494481	54495481	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-452964.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.36515788387674	2.29498769816686	2.58788762018274	2.14689789686435	2.36355024958085	2.21713923632551	-1.11262633131265	0.216841807087825	1
Merged-chr5-64759238-4	chr5	64758733	64759733	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44290.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.76651452162801	4.75347992676385	4.88471569986539	4.9095199975078	4.89961074519453	4.71999977255162	0.123889052518737	0.750685598548343	0.937588367655538
Merged-chr13-36740155-3	chr13	36739659	36740659	+	869.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-5682.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.62138391495585	3.03320330678374	2.79746418392583	2.77245458795993	2.58044051209775	2.87095124272723	-0.452312931995846	0.557473101434259	0.864245693030104
Merged-chr2-60255676-1	chr2	60255176	60256176	+	555.0	f1_c57bl6.idr	intron (NM_001290660, intron 4 of 5)	RMER13B|LTR|ERVK	28808.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	2.19905010504365	2.16464249438613	2.33422634943203	2.12056829763946	2.06573322146893	2.1503711582319	-0.903133435331036	0.310202317583088	1
Merged-chr16-20716485-8	chr16	20715988	20716988	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009900, exon 1 of 24)	5' UTR (NM_009900, exon 1 of 24)	148.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	4.61942143947341	4.1320177457058	4.00431864977914	4.29343329413866	4.26754210659145	4.32103684677609	0.00557996141365287	0.991109060323798	0.998181077898837
Merged-chr1-135789969-1	chr1	135789469	135790469	+	609.5	f0_balb.idr	Intergenic	Intergenic	-9452.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	1.78165274051968	1.95741467753775	1.80950337535099	2.04330539437013	1.91986060522395	2.29191683387815	1.9454530082007	0.0648211006493659	1
Merged-chr12-65074009-4	chr12	65073403	65074403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	35.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	7.8846162231669	8.25810318040483	7.77879180140064	7.98714613901445	8.38339631981374	7.75421852214683	0.114473350248198	0.676681437360085	0.912549881054299
Merged-chr6-123207654-2	chr6	123207154	123208154	+	708.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-22189.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	2.70296223309309	2.9197524206168	2.86540595546637	2.78039670590062	2.64857182378123	2.81715615081044	-0.44588426878165	0.541096472514712	0.856717981848775
Merged-chr16-95842943-4	chr16	95842451	95843451	+	858.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040484, intron 2 of 3)	intron (NR_040484, intron 2 of 3)	55762.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	3.46635985802483	3.32685336085981	3.44777037082255	3.56002938061502	3.37695234824186	3.46370146576263	0.202199214907249	0.729808394618978	0.930635866770147
Merged-chr7-125503600-4	chr7	125503107	125504107	+	945.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12065.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	3.96018135247712	3.69073718819321	4.30300032638125	4.36183212888311	4.01638664239028	4.56454200540608	0.908449158335797	0.0941171691345823	0.408642801522903
Merged-chr6-108127890-4	chr6	108127370	108128370	+	820.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145937, intron 7 of 8)	intron (NM_145937, intron 7 of 8)	57713.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	3.36809299396945	3.3993449094651	3.13741524363821	3.11284837786688	3.21027343138561	3.38316778918201	-0.310483949002064	0.626516330653198	0.892916235446326
Merged-chr3-41582539-4	chr3	41582045	41583045	+	902.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	17665.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	3.35398427810844	3.7777363131954	3.48228623172326	3.40395034078819	3.33800650185104	3.55330784578222	-0.462082051812548	0.445824839535357	0.805423449738546
Merged-chr11-5100055-4	chr11	5099562	5100562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	-103.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	8.07090295199315	8.50877864492661	8.11199441239805	8.10506959307985	8.29612844379387	7.77025828116086	-0.235347290091303	0.364819342624117	0.750028369485675
Merged-chr10-121475654-7	chr10	121475085	121476085	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	CpG	665.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.94833115111783	8.1734491204376	8.11168439074102	7.92072811338244	8.17512967437283	7.8690863464031	-0.112148397587001	0.62070200037504	0.890303081264007
Merged-chr8-47688674-4	chr8	47688178	47689178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13519.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	5.18855943229	5.06589745686287	5.32316360665912	4.82716301253526	5.16750295743243	4.9594979713056	-0.394415903914497	0.299593675342641	0.696314831841331
Merged-chr3-133547050-4	chr3	133546533	133547533	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2643.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.33240555370208	5.27283431477102	5.49588403558555	5.16929357440114	5.33495782959389	5.53063576401237	-0.0328682176302219	0.925179619793528	0.983147283355899
Merged-chr10-117910056-6	chr10	117909548	117910548	+	899.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15411.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	7.85700666558781	7.65970458010179	7.10052567946012	7.63991666634188	7.86212382398272	7.15850614550821	0.0129585257289348	0.966921332474909	0.992418870149749
Merged-chr11-85524394-4	chr11	85523932	85524932	+	813.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	171268.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	7.91039573917541	7.86532462156179	7.48844800402056	7.42501729038018	7.91173683317946	7.04998367594695	-0.357728524282947	0.240287068078822	0.637355287657274
Merged-chr6-16964518-2	chr6	16964018	16965018	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66077.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.05474262053232	4.80895946937236	4.87640406757147	4.98173388495318	4.86218972546623	5.38884364380831	0.353475403547852	0.380607111986514	0.762644044072963
Merged-chr1-182539549-4	chr1	182539043	182540043	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21933.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	3.89465143282396	3.84446778187427	3.83235100272704	3.87363623565714	4.03954573400611	3.79752016069039	0.178036871186296	0.729169439249646	0.930601789377265
Merged-chr9-32656966-3	chr9	32656450	32657450	+	790.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39092.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.75591790086415	4.83426351384171	4.88029327828113	4.32503848284292	4.45965502794184	4.60783442456178	-0.861273466936086	0.0386758155022212	0.24385327833523
Merged-chr4-34550448-4	chr4	34549930	34550930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007589)	promoter-TSS (NM_001007589)	-185.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.88783757936055	6.55498620433492	6.48953762589917	6.726199029958	6.62367787452376	6.58496862296308	-0.0255073844488648	0.925769426425286	0.983283624589872
Merged-chr6-6216591-3	chr6	6216096	6217096	+	965.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177572, intron 1 of 17)	intron (NM_001177572, intron 1 of 17)	577.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	4.46683367077329	4.83043889379424	4.72901886672683	3.85623827634969	3.74834094612477	4.07888359608853	-2.25415453865929	7.03628200850277e-06	0.000296743514122402
Merged-chr10-117718462-2	chr10	117717962	117718962	+	835.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7704.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	7.37440037808296	7.16852698193677	7.25274408631426	7.19402218037104	7.3482353543389	7.2518365203027	0.000862249737853736	0.997075742417462	0.99930956102084
Merged-chr16-4738904-2	chr16	4738404	4739404	+	839.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	-2709.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	4.22723622120677	4.5276147093616	4.2449156567924	4.19228033428673	4.10639885724273	4.26741959783368	-0.439426439048192	0.347418138471136	0.735497468013591
Merged-chr8-25101246-2	chr8	25100746	25101746	+	922.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155282)	promoter-TSS (NR_155282)	565.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	7.01082992737337	7.15464728674105	7.09332463289177	7.14956715031541	7.25966629387417	7.25982522512767	0.204782579693776	0.383120397173972	0.764535004943228
Merged-chr15-36179711-4	chr15	36179179	36180179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_012031, exon 1 of 19)	5' UTR (NM_012031, exon 1 of 19)	149.0	NM_012031	26942.0	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	4.16566277618261	3.99630613180878	4.21756654960262	4.01212600004303	3.6958335511117	4.44660846830876	-0.136930508664973	0.801983501194204	0.953115707820826
Merged-chr14-120277198-4	chr14	120276699	120277699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	1530.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.44897474021694	8.5674083183282	7.99516285030118	8.43887785258555	8.69475031236514	8.2727330948126	0.164648027949585	0.51980169150321	0.846048097455962
Merged-chr10-81393663-4	chr10	81393168	81394168	+	858.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099917, intron 1 of 3)	intron (NM_001099917, intron 1 of 3)	604.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	5.72109658687775	5.48967394858682	5.98508432349167	6.2326735906599	6.01637195802592	6.23278478206079	0.74518195566042	0.0195237431440028	0.15884099146844
Merged-chr15-51955205-4	chr15	51954716	51955716	+	867.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36544.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	4.51525516800306	4.95585112021244	4.3043747645225	5.04650974983273	4.85990708420358	4.65791834289623	0.531382167342189	0.251493430632936	0.648977062369525
Merged-chr16-11012801-3	chr16	11012265	11013265	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	3867.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	3.5980893109134	4.01117452635775	3.78715496183594	3.74809399185802	3.7118094292315	3.64450702571222	-0.358772916691835	0.516504648282658	0.844296391152365
Merged-chr13-44997008-2	chr13	44996508	44997508	+	854.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5088.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.32884028019232	5.03170224008933	5.13526903294155	5.62371317494087	5.52864811521553	5.26929268599561	0.624894505784429	0.0807206264861066	0.375953974313704
Merged-chr17-35979679-4	chr17	35979247	35980247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	78.0	NM_001282013	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	8.33875511608452	8.20678782346299	7.9470653220025	8.02491842045772	7.95398174512177	7.97996351358811	-0.27480886986161	0.219285808443789	0.61342523277831
Merged-chr9-22092778-4	chr9	22092269	22093269	+	861.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6484.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	3.59888518005509	3.50891590153215	3.38440333362454	4.21170637384828	3.73572697149882	3.58297085415714	1.23541814028528	0.0407520010685975	0.251792715891873
Merged-chr15-99032876-2	chr15	99032376	99033376	+	943.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2985.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.08600314488497	5.73075734511109	5.86078588455569	5.84349363392115	5.88792051471477	6.18644845259772	0.122097039588595	0.700746697757656	0.921002460903367
Merged-chr5-143579954-4	chr5	143579470	143580470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31264.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	4.87504546782142	4.57681910458149	4.7071797067289	4.77715097129971	4.46417385120088	4.88425773923102	-0.0392871563465851	0.926603562324682	0.983551822187064
Merged-chr17-45433703-4	chr17	45433215	45434215	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_152810)	promoter-TSS (NM_152810)	-8.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	8.20213442137816	8.43002244621895	8.03283397085287	8.03599661356962	8.20645600901642	7.76967634292763	-0.300013898191433	0.219146795744357	0.613227215079062
Merged-chr8-69919211-4	chr8	69918716	69919716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-16658.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	5.14362947548434	5.32027357072772	4.8790450924383	5.30467297743259	5.47331980007857	5.10071920854601	0.349483324314757	0.358741605501477	0.745080785526968
Merged-chr16-84836224-4	chr16	84835725	84836725	+	934.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016755)	promoter-TSS (NM_016755)	-600.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	5.25698115455969	5.16248337099026	5.61175357811473	5.60497332496773	5.36501606280575	5.26745312970531	0.152744529801135	0.674330859873312	0.911841916826811
Merged-chr15-76722280-3	chr15	76721787	76722787	+	924.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-114.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	2.92512528014797	2.69771898089562	2.89480736853237	2.75110941553943	2.46173521028252	2.78724086407258	-0.919890795530258	0.239187407205408	0.635962973481514
Merged-chr5-34661482-1	chr5	34660982	34661982	+	599.0	f1_balb.idr	intron (NM_001080743, intron 1 of 5)	B1_Mus2|SINE|Alu	1103.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	5.43791683766322	5.58658327510671	5.62973610894476	5.56321218492364	5.68545810084369	5.79360311499395	0.242885685285699	0.449915135964687	0.808013574003465
Merged-chr9-110623214-4	chr9	110622707	110623707	+	815.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026012, exon 2 of 5)	5' UTR (NM_026012, exon 2 of 5)	1186.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	4.33828713147296	4.21262675402021	4.3451386130097	4.34906692477777	4.63898642239484	4.58007653196348	0.600633992097908	0.175201551810087	0.554957201378573
Merged-chr11-11692670-2	chr11	11692170	11693170	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	2493.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	5.14603945273875	5.42544208671873	5.05660510246591	5.1243513753297	5.15696599462621	5.15670544388658	-0.170190779911151	0.641281119972591	0.898914298204935
Merged-chr14-50998574-1	chr14	50998074	50999074	+	854.0	f0_c57.idr	Intergenic	Intergenic	-9177.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	3.37209611615707	3.60967450137795	3.34919360605994	3.37109867018018	3.24644461137931	3.36380789806674	-0.500794309043171	0.409034522212284	0.782473112145764
Merged-chr16-55823272-2	chr16	55822772	55823772	+	860.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	-1134.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.69061119233975	4.78881091333376	4.78475043422055	4.36765921652798	4.67868366819532	4.98819438630799	-0.139199594106696	0.748097676341299	0.936880860325556
Merged-chr14-118691932-6	chr14	118691393	118692393	+	841.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	14326.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	5.04180956976	5.04359827069302	4.97684328743734	5.95251782133797	5.83336625407105	5.95028407521668	1.70101432929932	3.77978183642791e-07	2.30577776426315e-05
Merged-chr11-20712384-4	chr11	20711873	20712873	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 2 of 8)	intron (NM_181411, intron 2 of 8)	29183.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	5.78027196082519	6.00990885095098	5.72404335941481	5.97787974366235	6.0018992063475	5.6751643560063	0.092384834150998	0.770774164876386	0.94345245755247
Merged-chr3-87356795-4	chr3	87356284	87357284	+	948.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1097.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	6.13975295565717	6.03343423124045	6.48652922088442	7.06589442144356	7.47487592756609	6.92812020122314	1.51741413545813	3.16564997079414e-07	1.96866519259969e-05
Merged-chr13-55622972-4	chr13	55622483	55623483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-22.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	7.74420514411555	7.99001847927471	7.75387186455385	7.98411967093342	8.04646589392786	7.57417908529445	0.0796643338800334	0.746607795788516	0.936300236930265
Merged-chr5-21784590-4	chr5	21784083	21785083	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011188)	promoter-TSS (NM_011188)	582.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	5.5764651254441	5.2441770339769	5.44189365680567	5.82651041534092	5.56177290023542	5.50536399121287	0.404214443485145	0.238345433885317	0.6350320428813
Merged-chr15-59816327-4	chr15	59815823	59816823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-21364.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.59651239872918	5.37686994943389	5.34334969300365	5.47640991649152	5.52965949601265	5.05671166963637	-0.121791935919059	0.73730748744998	0.933692850573981
Merged-chr4-139240546-1	chr4	139240046	139241046	+	783.5	f0_balb.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	46435.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.06780624046723	4.98937270606789	5.22423896538646	5.03313794481438	4.79230906731297	4.67427212583471	-0.531215962030576	0.174265519321873	0.553403760466163
Merged-chr5-135449643-2	chr5	135449143	135450143	+	600.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 8 of 30)	intron (NM_146001, intron 8 of 30)	-55097.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	2.56016357949417	2.35535485950129	2.72360914066046	2.38610729666206	2.46395984738361	2.4254721362429	-0.747245321277885	0.365697520824537	1
Merged-chr2-150828733-3	chr2	150828239	150829239	+	941.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153781, intron 18 of 19)	intron (NM_153781, intron 18 of 19)	13831.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.40529656459476	3.51028190436364	3.35541119289525	3.25308093575406	3.40770134088026	3.42654855495116	-0.247383690875428	0.679001107998182	0.913553914280182
Merged-chr4-40971970-4	chr4	40971459	40972459	+	975.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290448, intron 1 of 15)	B3|SINE|B2	1016.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	5.97142156867401	6.33563724700246	6.19324184323047	6.13675960800077	6.15706065000925	6.23299017291768	-0.00500190092788051	0.986342378778089	0.997033990984076
Merged-chr13-18800610-4	chr13	18800116	18801116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	83324.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	6.89609547771244	7.08297515271206	6.69346594210413	6.76925455567834	7.10211875645015	6.83212018756647	0.0120006128777477	0.964636291730693	0.991519129389361
Merged-chr19-8929492-4	chr19	8929006	8930006	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009073)	promoter-TSS (NM_009073)	-150.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	6.85962912527062	6.8369130774701	6.96553891063742	6.76336583897412	6.59079760443208	6.61847339857628	-0.352529802765389	0.161657830876015	0.534783258167936
Merged-chr16-4684025-4	chr16	4683496	4684496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-74.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	8.17998031321249	8.38407082375916	8.19646891277101	8.41961321399464	8.67774872636777	8.14963722664545	0.254963350253128	0.284158023378859	0.681880917355677
Merged-chr10-127622974-2	chr10	127622475	127623475	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1827.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.05365683464115	5.47513196737882	5.85816619983929	5.85029468986054	6.00111433646589	6.01264265643844	0.245564512497096	0.461466369506843	0.814992635038861
Merged-chr16-29451892-4	chr16	29451397	29452397	+	891.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164613, intron 14 of 21)	intron (NM_001164613, intron 14 of 21)	-73165.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	2.54703336141048	2.4098462429335	2.54037163113304	2.5393042717383	2.59326763265953	2.67628430194616	0.606532548689179	0.435116271677293	1
Merged-chr17-5025584-4	chr17	5025091	5026091	+	936.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	30517.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.64251035139465	3.95731122003724	3.76598177536086	3.82586558645809	3.94851493876786	4.0330788854702	0.428914919044109	0.417130357444443	0.787792972496192
Merged-chr2-139380328-2	chr2	139379828	139380828	+	614.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113585.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	3.212117377634	3.50240107820128	3.55768535130757	3.59360878270663	3.71524913398451	3.92233512591424	1.12117744416088	0.0594722547711907	0.315718219663216
Merged-chr12-3896182-2	chr12	3895682	3896682	+	944.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 3 of 17)	intron (NM_153743, intron 3 of 17)	4438.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.88138924634872	5.54217206147412	5.77829117044762	5.41936343408429	5.13072254528784	5.340713534581	-0.848489385666641	0.0136963828428873	0.125002591158382
Merged-chr17-42875735-4	chr17	42875230	42876230	+	950.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	694.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	6.98159022261408	7.11079728043157	6.84058273184171	7.27698226967645	7.08569935102415	6.89911987839053	0.171209641008505	0.505755323908132	0.838177729332582
Merged-chr2-164679346-4	chr2	164678847	164679847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-5260.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	6.37682769261605	6.72243982911107	6.53450867471728	6.755790530737	7.00741079199492	6.34311382080339	0.300135545117744	0.324618915822679	0.717544999689449
Merged-chr6-65115794-2	chr6	65115294	65116294	+	645.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	28936.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	4.77967120533853	5.16266913493065	4.96374941002265	4.59865811684213	4.53223051845952	4.65096738455928	-0.898310479837133	0.0277692562598693	0.198866019009485
Merged-chr5-28037799-4	chr5	28037310	28038310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33602.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	7.1668099845158	7.50662916141723	7.3709680082771	7.18010444114697	7.60641493493636	6.91832379139952	-0.112241560440031	0.695642291028004	0.919291538728398
Merged-chr10-4389163-2	chr10	4388663	4389663	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1055.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.9546584033557	5.31641962384454	5.30433647622602	5.02614409885957	5.46225544189078	5.53777471984421	0.319996781145705	0.405167859135692	0.780049815379569
Merged-chr1-120265399-4	chr1	120264889	120265889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-109.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	5.48436259686161	5.69234545227406	5.59167466265007	5.72976006983991	5.61132470214459	5.13603256574961	-0.118584535467489	0.740273316597707	0.934501571762959
Merged-chr1-105990414-4	chr1	105989912	105990912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	6.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	8.06217548144906	8.13212114539012	7.83106485365621	7.73548983606679	7.74933880254944	7.62773014711796	-0.446487209805862	0.0454321673077502	0.269088269873909
Merged-chr7-141562160-4	chr7	141561631	141562631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007459)	promoter-TSS (NM_007459)	-49.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	7.21274471347007	7.26581533465516	7.35658579209589	7.15636247319648	7.31551394949926	7.01304980103547	-0.149529739465576	0.535792149968561	0.853668337370661
Merged-chr3-51708798-4	chr3	51708274	51709274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	47595.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	7.16727198593331	7.44572338326163	7.11325521153059	7.27381879660186	7.49599920545576	6.97840836400165	0.0326896779604402	0.903281441110576	0.977795961230811
Merged-chr6-72038451-2	chr6	72037951	72038951	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	ORR1C2|LTR|ERVL-MaLR	4077.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	5.48187209064785	5.12268186997469	5.47773578816903	5.22014399217169	5.35892286358228	5.27070404037383	-0.154484142839969	0.665279136893399	0.907762144972922
Merged-chr3-108883742-1	chr3	108883242	108884242	+	822.0	f0_balb.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	6266.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.06410828712513	3.96468054617506	4.45516961227131	4.1506452805025	4.05511237554421	4.18894442479896	-0.105374215826789	0.832263362860536	0.960616839788396
Merged-chr4-135270692-2	chr4	135270207	135271207	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013885, intron 1 of 5)	PB1D7|SINE|Alu	2053.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	2.76329085110706	2.72189326295639	2.77090123265654	2.85178030006019	2.80632027044329	3.02229348257509	0.713650183756017	0.316463921171503	0.710557877168509
Merged-chr17-47777957-2	chr17	47777447	47778447	+	909.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	B1_Mus2|SINE|Alu	-7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.4047816113566	3.52266880321631	3.88719596036136	3.40593337996613	3.36570480164098	4.12320352879921	0.195195801298178	0.766290935309504	0.942437273046488
Merged-chr9-80067623-5	chr9	80067152	80068152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311110, intron 1 of 23)	CpG	749.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	7.47621986617557	7.3511965147776	7.34427104564011	7.55072467818675	6.92561566309209	7.56333043200308	-0.0289700272315019	0.917249317466897	0.981588017376699
Merged-chr9-65562742-2	chr9	65562242	65563242	+	794.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17345.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.53776434699584	6.39438891438084	6.76167035072967	6.45577218849056	6.0727240033043	6.27679312056861	-0.476906726412235	0.103194727043253	0.428296315983601
Merged-chr3-15128539-3	chr3	15128029	15129029	+	970.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	157328.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	3.24738590372524	3.31606128736715	3.47764244213693	3.1139410676969	2.96182198062318	3.16675407128457	-1.15850661411165	0.075011303031185	0.360571832859606
Merged-chr7-127915479-2	chr7	127914979	127915979	+	765.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026370, exon 3 of 11)	exon (NM_026370, exon 3 of 11)	2465.0	NM_001360699	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	2.78490485517147	2.78789280787428	3.24708773332905	3.23192392567277	3.13909261000915	3.09343173814873	0.933636607240381	0.193909690070892	0.581288953828539
Merged-chr7-45708367-4	chr7	45707890	45708890	+	936.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016974, exon 3 of 4)	exon (NM_016974, exon 3 of 4)	3143.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	7.3252610708935	7.4165590146307	6.89368340063707	7.46045740881195	7.81416886480947	7.13991082314535	0.399620563450329	0.17517327461615	0.554890477587384
Merged-chr17-32810868-4	chr17	32810366	32811366	+	946.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	-935.0	NM_183177	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	3.63873537985809	3.48720197801223	3.80123119868163	4.35888241655598	4.26901859717444	3.9265249935908	1.77490114529046	0.00105183342692292	0.0187250654230642
Merged-chr17-47006195-4	chr17	47005678	47006678	+	726.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146078, intron 1 of 46)	L1MB5|LINE|L1	4354.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	4.03200829411517	3.67864500526208	3.93402506904205	4.00721680897091	3.79818885669537	3.85299747880093	-0.00228687481751219	0.996547484136022	0.999103012741004
Merged-chr13-70636977-2	chr13	70636477	70637477	+	545.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144837, intron 1 of 18)	intron (NM_144837, intron 1 of 18)	657.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	5.14626215031051	5.11780904181798	4.98856689785544	4.66097324771908	5.01977889538664	5.42491389488254	-0.0529896427363667	0.898527141487359	0.976358424928243
Merged-chr7-12979759-4	chr7	12979285	12980285	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175558, intron 3 of 5)	intron (NM_175558, intron 3 of 5)	1937.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	5.12167773501399	5.03656774570182	5.28227120491492	6.65773986109287	6.7607422618329	6.63015544654155	2.76554802562159	2.66348908080483e-19	1.59441438442883e-16
Merged-chr8-69867391-2	chr8	69866892	69867892	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151668, intron 3 of 5)	intron (NR_151668, intron 3 of 5)	20000.0	NM_026818	68709.0	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	4.46101765573813	4.25863766698585	4.70776879254955	5.2833437517351	4.58911034481996	4.99174053125599	1.16271224188419	0.0115919780777286	0.111572621387119
Merged-chr11-95840249-4	chr11	95839736	95840736	+	872.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-2059.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.37420324930378	6.19124477297962	6.39284635683436	7.14772921689367	7.03438452941014	6.43359151906515	0.948876010836353	0.00176941503870417	0.0281079584842491
Merged-chr2-73338632-4	chr2	73338136	73339136	+	927.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029022)	TTS (NM_029022)	25984.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	4.2605728836641	4.27340360577446	4.5560234606522	4.24515685988899	4.07708702011464	4.05659161313756	-0.633671524974626	0.180602652363025	0.562557013357639
Merged-chr10-51482710-2	chr10	51482210	51483210	+	569.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008147, intron 4 of 8)	intron (NM_008147, intron 4 of 8)	2098.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.08821346489258	6.39909077137361	6.26807865376571	5.26741175840769	5.47157716029598	5.46470173101767	-1.53042574405808	1.7088053713133e-06	8.64880032458862e-05
Merged-chr10-40097637-4	chr10	40097138	40098138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	MTC-int|LTR|ERVL-MaLR	44616.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.3019226375557	6.14600723606285	6.35063582821055	6.402100534929	5.97055711690237	6.17138286030863	-0.126541068400493	0.671069880675639	0.910289924720412
Merged-chr16-4875948-2	chr16	4875448	4876448	+	729.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145359, intron 2 of 2)	intron (NM_145359, intron 2 of 2)	3903.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	3.26141030423182	3.15174103518059	3.33879105051966	3.2166071691129	3.31381870258689	3.12208820170274	-0.0971200463310061	0.877745349335817	0.971719841773455
Merged-chr2-126152078-4	chr2	126151582	126152582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026981)	promoter-TSS (NM_026981)	-59.0	NM_001355583	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	6.47780788470572	6.72368810291791	6.50503543437252	6.34912991022204	6.46041602456731	6.52917889799463	-0.21283774500996	0.43004906011352	0.796088071540842
Merged-chr2-80065326-4	chr2	80064802	80065802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	RMER19C|LTR|ERVK	-26400.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	3.35531732516609	3.18929769226772	3.29838716378756	3.26900033323031	3.07299927187164	3.31381631682956	-0.270893614122294	0.667100020413807	0.908538341275894
Merged-chr10-117821996-4	chr10	117821520	117822520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 3 of 7)	intron (NM_024457, intron 3 of 7)	23954.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	6.16656749520974	6.10369522168077	6.39197940328923	6.04579783097745	6.08413561153221	6.14101001119603	-0.218017592489462	0.4480482987789	0.806987377046511
Merged-chr2-116977168-4	chr2	116976654	116977654	+	887.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	77002.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.91534996053195	6.8305604471719	6.95326834113629	6.91296119476536	7.23540422668375	7.07761417087079	0.288529203116725	0.249239379527405	0.646150295359371
Merged-chr6-86583770-4	chr6	86583273	86584273	+	911.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44401.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	5.87585451727034	5.65747446883192	5.80102997602208	5.59836050393444	5.93960980439368	6.28563876843396	0.324878606679315	0.340823540464069	0.730550636413463
Merged-chr6-134026586-2	chr6	134026086	134027086	+	595.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9114.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.94323925825997	2.99013167330985	3.085584739416	3.26956797711939	3.00706366866822	3.03870408189577	0.476384227760644	0.475652598445694	0.822077546765315
Merged-chr15-84979478-4	chr15	84978967	84979967	+	927.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8504.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.49709074383389	4.74990467649121	4.75441641980292	4.80944531088224	4.77735502079161	4.78194605515089	0.279185398538404	0.488971092223952	0.829435643931475
Merged-chr8-26960241-6	chr8	26959705	26960705	+	717.527771	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17131.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	4.28467386964874	4.3638717265317	4.33860332044064	3.782751806585	3.92421828124427	3.83263928346516	-1.39798831699755	0.00495106302821291	0.060816069154346
Merged-chr2-71390122-4	chr2	71389605	71390605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	845.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	7.96115726624182	8.27127769337661	7.91538952228469	8.01846604746923	8.4215518389016	8.00266138932799	0.149325562390467	0.5485326801798	0.85981288622562
Merged-chr9-102835322-4	chr9	102834831	102835831	+	857.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284258, intron 1 of 13)	CpG	411.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	3.79261563395144	3.69355466840343	3.53679527874696	3.49561559082249	3.10578348279959	3.71324515264396	-0.802823275877044	0.210959835689836	0.603297566953529
Merged-chr5-139702396-4	chr5	139701918	139702918	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33915.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.74325280521955	5.29588701930285	5.28156051057569	5.78302865695434	5.23131430826236	5.44203752969528	0.0733212107406033	0.847939829335227	0.964318271116593
Merged-chr11-54975807-3	chr11	54975336	54976336	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12896.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	2.97327944669308	3.00355036676787	3.2514687248574	2.84354320943649	2.62409481808084	2.8679066590206	-1.51434932711579	0.0409915623666709	0.252578933753403
Merged-chr5-45384391-3	chr5	45383968	45384968	+	682.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131933, intron 1 of 5)	RMER6B|LTR|ERVK	39932.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	3.29558358796116	3.28106117129353	3.71883410202365	2.73705273148434	2.65487072617198	3.24299420870299	-2.2809929576944	0.130824402381757	0.483397880606654
Merged-chr1-92659574-4	chr1	92659079	92660079	+	877.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10738.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.89437282020396	4.46572680439315	4.68256493209949	4.47004475769012	4.37454159202218	4.78546598337729	-0.360030897216914	0.419684563065725	0.789150628972688
Merged-chr2-180023858-2	chr2	180023345	180024345	+	646.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1142.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	2.97195711067578	2.92568081693005	3.35014126030836	3.07624782422501	2.95249787603876	3.03539709196588	-0.303788090413648	0.659271548210836	0.905300222518809
Merged-chr6-4997769-3	chr6	4997263	4998263	+	857.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	94443.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.13229979047918	3.35564863951974	3.14649371004126	2.79951616076036	2.82109214126392	3.10288700114203	-1.46421718123322	0.0392016945509354	0.24562459338812
Merged-chr4-6354178-2	chr4	6353670	6354670	+	666.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11510.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	3.93309416239703	4.1895491730583	4.16047878398913	4.1449963472166	4.17057680809962	4.22829374970957	0.232510985236824	0.626241055321795	0.892830487315867
Merged-chr12-4235790-2	chr12	4235290	4236290	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204912, intron 1 of 1)	MTD|LTR|ERVL-MaLR	1763.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	5.95886531725993	6.19527713203682	6.06143233116486	5.83804020152985	6.34220089332547	6.28746481449827	0.171229712385654	0.585570116362309	0.875050597792612
Merged-chr9-7869407-4	chr9	7868869	7869869	+	902.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	3801.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	7.0978408321392	7.12670522020755	7.21413635360216	7.41839122034977	7.58493310483851	7.28342663005727	0.443658717351598	0.0615426988160759	0.321848224926048
Merged-chr12-33303142-4	chr12	33302624	33303624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	609.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	8.33907070167647	8.7494649936447	8.00795496506259	8.42694089763086	8.8927659456414	8.10211425557867	0.15953856842804	0.59929921761107	0.880934255570735
Merged-chr18-62188165-2	chr18	62187665	62188665	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8065.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	6.69564241059994	6.7380524731826	6.84103821400087	6.5413739724157	6.71773155951334	7.0452658399573	0.0324380196814935	0.905617697016969	0.978425344945364
Merged-chr1-164088073-4	chr1	164087587	164088587	+	916.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26011.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	3.42304439887842	3.55361410263738	3.6117827005846	3.47597179718309	3.65835834652821	3.78135711235219	0.397382155773389	0.484195457011062	0.826727999240278
Merged-chr6-39379955-4	chr6	39379408	39380408	+	942.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1445.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	6.51437113069791	6.2973195997803	5.76990740408113	6.27448344127766	6.06350429779855	6.24303688843677	-0.0856790818094325	0.795054157026422	0.950977844444051
Merged-chr16-88487952-4	chr16	88487451	88488451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19027.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	3.6353869539372	3.61835651754199	3.80434421261862	3.55990935655443	3.67927579384068	3.5637868835783	-0.263770739780451	0.63321551205211	0.895973137551133
Merged-chr8-95808103-4	chr8	95807616	95808616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-654.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	7.21915249304916	7.68838774369096	7.58623211165419	7.40066218173718	7.71421952873968	7.70596099503499	0.148906387989609	0.564260442302784	0.866244877704675
Merged-chr1-163974840-2	chr1	163974340	163975340	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19956.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	3.2074992062271	3.31419016972669	3.08376844360169	3.2512974324928	3.32693239669717	3.49427717754698	0.595170791950257	0.346887280656547	0.735064987110549
Merged-chr10-96876539-1	chr10	96876039	96877039	+	546.0	f0_balb.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-159229.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	3.77518939840853	4.1997762226592	4.20935199652069	3.91921502212865	3.41296685142553	3.86140867955115	-1.02007717904207	0.0801876333505994	0.374656218532016
Merged-chr2-59347545-2	chr2	59347045	59348045	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	39137.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.34451996766523	3.90967282988488	4.17596378408965	3.94501472150214	3.94814726782587	4.24346505565496	-0.316750907189544	0.534440340899347	0.853068627162717
Merged-chr17-31576841-1	chr17	31576341	31577341	+	540.0	f0_balb.idr	intron (NM_016670, intron 1 of 10)	ORR1F-int|LTR|ERVL-MaLR	12068.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	4.09602332868188	3.97444001691676	4.1875481521357	3.95322115306325	4.0152302550591	4.07342864245022	-0.207270298669328	0.670056633794645	0.909877715716983
Merged-chr3-96267314-2	chr3	96266814	96267814	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1340.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	3.94110518204905	3.91774024601965	4.28455017444405	3.96458830285941	4.26462574989576	4.03702030984239	0.155541635833444	0.759737376188572	0.940572672765463
Merged-chr8-122437330-2	chr8	122436830	122437830	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_028354, intron 7 of 10)	intron (NR_028354, intron 7 of 10)	-4390.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	2.86328010019739	2.87823709235561	3.18393134665488	3.00521123012596	2.7372047514134	2.7858394128012	-0.629236078037935	0.386882412242986	0.76724843120478
Merged-chr8-117802863-1	chr8	117802363	117803363	+	546.0	f1_balb.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-889.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	4.05418834956526	3.89280730359158	3.72301177541056	3.35426849334885	3.52574664185384	3.8443176312881	-1.06498118599872	0.0689800023567587	0.343611592199544
Merged-chr2-132604065-3	chr2	132603559	132604559	+	821.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	5863.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	5.22718125235342	5.5502667020148	5.69954625187749	4.80649367060011	4.8096401857203	5.24983120773699	-1.10825329758392	0.00469098951111488	0.0585813980550573
Merged-chr6-8494600-4	chr6	8494096	8495096	+	956.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14565.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.40639586383886	4.63828447758301	4.62800983711648	4.50856732664859	4.67954629241619	4.30168914265226	-0.101917519717972	0.818036712148239	0.956842917576288
Merged-chr17-32283506-4	chr17	32282998	32283998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	625.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	7.50220712432141	7.4118242460596	7.33165752426218	7.63847722862382	7.47808384350352	7.58505734058243	0.213931196960283	0.344508312744708	0.733150745942016
Merged-chr6-114902343-2	chr6	114901843	114902843	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	19478.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	3.1492298433446	3.20272786180259	3.04967853906398	3.02870244553453	3.13172552326842	3.40302981194012	0.223499779399833	0.73439503128178	0.932426757820458
Merged-chr16-91727115-2	chr16	91726615	91727615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 1 of 11)	B3|SINE|B2	1687.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	7.1584787833082	7.3101432098029	7.23588156797137	7.21829739250677	7.56560043149004	7.00930298552801	0.0914704493778346	0.729164113050191	0.930601789377265
Merged-chr6-71980658-3	chr6	71980146	71981146	+	916.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61882.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	5.29948217654916	5.21200173037703	5.17679720819514	5.35257297332691	5.02787608539861	4.83130015294598	-0.282232412551181	0.458262558594914	0.812960749095292
Merged-chr19-4755786-4	chr19	4755271	4756271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-754.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	7.53989831828975	7.61574852765652	7.17739522577802	7.45585596434212	7.59394835128743	7.38967131124551	0.0283194445017821	0.909204477124554	0.979384717565381
Merged-chr17-70850591-3	chr17	70850115	70851115	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	595.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.27253880163269	8.56732480765039	8.21985222976854	8.32201713365497	8.77400216449978	8.44599288643722	0.232078356560883	0.336591900039348	0.726578163839891
Merged-chr12-8922152-6	chr12	8921705	8922705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008640, exon 1 of 7)	exon (NM_008640, exon 1 of 7)	898.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	8.9025076438516	9.21747482452936	8.82839187517906	9.07309068615215	9.28771296228822	8.71898240968116	0.0764615002361754	0.755932364340238	0.939495792549816
Merged-chr6-122921643-4	chr6	122921137	122922137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199311)	promoter-TSS (NM_199311)	-211.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	6.6141413688021	6.64467499558009	6.72314466095435	6.61591503051683	6.87175613889657	6.88487416014459	0.217114290328473	0.400513721834181	0.77677425276504
Merged-chr13-24684693-4	chr13	24684187	24685187	+	898.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	46039.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	1.97335819632089	1.93859949807448	2.10350864495469	1.77374840553185	1.65924319796066	1.98173075376514	-1.84593040687044	0.0973838887886808	1
Merged-chr19-4855849-1	chr19	4855349	4856349	+	544.0	f1_balb.idr	intron (NM_019861, intron 2 of 13)	intron (NM_019861, intron 2 of 13)	720.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	5.97570516876876	5.85019274146774	6.03339063707619	6.00479646192336	5.96396063527637	5.90898719487324	0.0206010100809767	0.944094238367833	0.987556802178748
Merged-chr7-142421948-2	chr7	142421444	142422444	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-12906.0	NR_153437	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	3.8695588842575	3.70207406251494	3.90375678702582	3.77553106036527	3.82903304880103	3.97217505888099	0.105044223829351	0.839911276559904	0.962784121274377
Merged-chr9-50482939-4	chr9	50482434	50483434	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11591.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	2.9675682108984	3.15519656516798	3.35902161645785	3.00698206490493	3.19839456240454	3.10051905196917	-0.249494274495905	0.710690961472458	0.924434859419411
Merged-chr5-72225710-2	chr5	72225210	72226210	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	22367.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	5.69031027221998	5.62633212394466	5.82592417344728	5.79800320406206	5.81625259421273	5.78812818514187	0.167581706277459	0.584474351359344	0.874568023559098
Merged-chr12-85702343-2	chr12	85701843	85702843	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	15623.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	4.32994392670098	4.3232591984471	4.39934999060863	4.25454916405322	4.26920882104582	4.58590058821906	0.0517478068064073	0.908812172038185	0.979318923423343
Merged-chr5-96913883-2	chr5	96913383	96914383	+	859.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7389.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.42589481178214	5.4305024682439	5.73023440175046	5.04247338944691	4.84375807344286	6.00423257149484	-0.252163575886851	0.586581545733857	0.87561044199029
Merged-chr9-105033866-1	chr9	105033366	105034366	+	714.0	f0_c57.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19402.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	5.41720800177741	5.64989029632842	5.88487472964415	4.86487185098616	4.96597930403628	5.24450568123519	-1.2572263898147	0.000735623170633699	0.0142050899935226
Merged-chr9-7336933-4	chr9	7336454	7337454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7443.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	6.42353410481683	6.58065683050721	6.6756478706368	6.38126351957381	6.29461845417089	6.80774720121388	-0.0928560089929961	0.751150554151021	0.937718261890661
Merged-chr8-106936174-1	chr8	106935674	106936674	+	982.0	f0_balb.idr	exon (NM_009229, exon 1 of 7)	exon (NM_009229, exon 1 of 7)	424.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	6.82678862883113	6.93123663294737	6.73059410640853	6.56881093985191	6.18623516128622	6.52382746669461	-0.648635673099146	0.018390454709253	0.152946822133686
Merged-chr8-13156587-2	chr8	13156087	13157087	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2574.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	5.76424669580782	6.03250611240451	6.02313910146329	6.17757061120992	6.39173289628178	6.08416262467107	0.497179482269541	0.0982404083175681	0.41779495994137
Merged-chr12-51667372-2	chr12	51666872	51667872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-23594.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	3.75909478686084	3.6395638227774	3.92231139745486	3.62075037959918	3.36174920081788	3.75189970315784	-0.667583404495324	0.244967418115067	0.642381314494918
Merged-chr16-95839141-3	chr16	95838620	95839620	+	734.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	59593.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.33671734291027	4.38308921708086	3.93856875514709	4.20076392877464	4.24042740589565	3.95605547516585	-0.27051553508339	0.592336612282575	0.878003422897225
Merged-chr5-64391614-4	chr5	64391130	64392130	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76312.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.60194197946979	4.29176856580248	4.56840315093356	4.29389884784918	4.00689193981803	4.47529651091119	-0.603785875047585	0.204869667093876	0.595562843152264
Merged-chr17-73934880-2	chr17	73934380	73935380	+	751.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 5 of 35)	intron (NM_011723, intron 5 of 35)	15316.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.96408541916278	6.07771664776917	5.60905464096067	5.47886461001121	5.76252980333917	5.21204929493196	-0.702806084375078	0.0523961076920654	0.292739899875201
Merged-chr10-117864842-2	chr10	117864342	117865342	+	844.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18868.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.16896220649487	4.88304212608233	5.08154478799878	5.67172880336554	5.3829410188724	5.55083426695683	0.976211545175911	0.00654119110759196	0.0744161101559354
Merged-chr18-80470983-3	chr18	80470475	80471475	+	788.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1308.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.15773303990431	5.32614696880793	5.27147716532653	5.19081458393672	5.24069271727669	5.39504842012599	0.0385046121479885	0.912097423848755	0.980261455963514
Merged-chr15-79946192-4	chr15	79945734	79946734	+	890.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13588.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	2.72239545676728	2.61610143497138	2.71502690666697	2.58871903762908	2.42052024292097	2.60139635723697	-0.870897431818291	0.263172562060169	1
Merged-chr7-100230748-3	chr7	100230256	100231256	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	3149.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	4.83023199238587	4.69912621908156	4.72973853897676	4.74741168100362	4.90760712461652	4.58883995107621	0.0252013283397513	0.950453132434653	0.988433654388255
Merged-chr11-70447598-4	chr11	70447109	70448109	+	963.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4322.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	5.87689668298632	5.87823352212347	5.8756071398523	5.94245383263161	5.8250259828621	6.0734342883043	0.114518349068122	0.701274672752151	0.921225520800058
Merged-chr8-13153376-2	chr8	13152872	13153872	+	714.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5789.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	2.84036735692333	2.76596623166039	3.05193833381705	2.896365429751	2.82410440568058	2.89214865585536	-0.0776036974161914	0.912351155364199	0.980351280084664
Merged-chr4-132564155-4	chr4	132563657	132564657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	90.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	6.78362544215101	6.43087626967179	6.11130082208025	6.06915812871638	5.99244266807825	5.65978655467293	-0.953043395866574	0.00473658136256747	0.059026727874272
Merged-chr7-83643600-3	chr7	83643111	83644111	+	914.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001360089, exon 7 of 7)	3' UTR (NM_001360089, exon 7 of 7)	11594.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	4.64932687770435	4.69027320201411	4.93359836381425	4.56644828757793	4.31547741423266	4.8967196124803	-0.369524986995322	0.406035112686164	0.780519739017044
Merged-chr3-94588174-4	chr3	94587677	94588677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-5461.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	6.24578184503227	6.31836454574738	6.01431863692516	5.80634263946079	5.66147358326529	5.72302804629648	-0.836573712500654	0.0054008691431557	0.064614740426125
Merged-chr3-8981053-1	chr3	8980553	8981553	+	813.0	f0_balb.idr	intron (NM_009412, intron 1 of 5)	MTD|LTR|ERVL-MaLR	-16907.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.59529927584501	6.39409854403446	6.22256556294303	6.26782598677366	6.24554704878053	5.70373689578361	-0.509804074464803	0.113373537935312	0.449785072835135
Merged-chr3-108147570-2	chr3	108147070	108148070	+	718.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1418.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	3.674968657844	3.65987945832434	3.67619972771261	3.90779357915837	3.72483131378133	3.79901723926201	0.465528875720399	0.38048302608132	0.762579045047077
Merged-chr2-27735284-2	chr2	27734784	27735784	+	790.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	24701.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.32888773857547	5.28607545753214	5.58268496298619	5.53066227986233	5.30213708586514	5.79298095819343	0.28431461823064	0.425337933294731	0.793032706839624
Merged-chr17-4908397-4	chr17	4907902	4908902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-86672.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	7.37656540877718	7.07159320070148	7.07936081087108	7.28514104669833	6.93822733802602	6.94527617132177	-0.180338151856621	0.493210172039995	0.831208279358962
Merged-chr10-86701483-2	chr10	86700983	86701983	+	704.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011631, intron 5 of 17)	intron (NM_011631, intron 5 of 17)	3961.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	4.15474072508984	3.91964750233715	4.11580314654179	4.10287853068303	3.83130997798819	4.31406813885236	0.0619141229390662	0.903720251015281	0.977858102400597
Merged-chr18-12947923-4	chr18	12947444	12948444	+	965.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6103.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	3.42855419708033	3.46274119813705	3.4602819759905	3.29141582750072	3.31819282514672	3.36577092581232	-0.493019900624171	0.403869689230557	0.77907073817134
Merged-chr9-21181640-4	chr9	21181131	21182131	+	974.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183408, intron 1 of 14)	CpG	-2470.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	4.98054427142582	4.96027147975399	5.60708252185935	5.47585379687173	4.6883514773143	5.3504230623084	0.00347680410225643	0.99391487603506	0.998860681737346
Merged-chr7-19253887-4	chr7	19253383	19254383	+	890.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17971.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	4.41688633836977	4.70889068462451	5.18985538645305	4.77633756950661	4.85394176169336	4.86546818753846	0.0734902542164614	0.86923164439207	0.969788171765313
Merged-chr8-108580687-2	chr8	108580187	108581187	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	3990.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.93820997287716	2.73153592542402	2.91665636262771	2.9315873642911	2.85634981301392	3.16080068539394	0.573415329421579	0.417657851387617	0.788219281770644
Merged-chr19-18713094-4	chr19	18712609	18713609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-127.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	6.27646767411678	6.33859326439339	6.60745049975201	6.51310460100654	6.25408907912094	6.39023763022002	-0.0318214523090426	0.910570049454766	0.979885578167044
Merged-chr4-109665920-6	chr4	109665413	109666413	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007671)	promoter-TSS (NM_007671)	-541.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	5.83917170904018	6.28840495479721	6.38826315531267	6.59619160272658	6.76286257276651	6.51999555339251	0.731828789370818	0.0152734080676083	0.134313014002278
Merged-chr16-91387019-3	chr16	91386512	91387512	+	735.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	14229.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.06708880703979	5.74314026935687	6.06501041542948	5.79085499034172	5.83077227197483	5.82499281000548	-0.2583424450147	0.403571254360811	0.778882003719199
Merged-chr3-9829247-4	chr3	9828765	9829765	+	837.837524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195031, intron 1 of 8)	MIRb|SINE|MIR	4414.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.96586922362588	6.03625490515159	6.0241128473833	6.06464973047872	6.54653257088587	6.1521416477021	0.467467650997463	0.12703556358552	0.476314670819392
Merged-chr17-86969801-4	chr17	86969346	86970346	+	938.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	6735.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	3.99471973818671	4.1935812744749	4.13554985711743	4.38638423253783	4.33911680071822	4.38478038216498	0.704825625137944	0.125839760387292	0.4745139364226
Merged-chr6-128754924-1	chr6	128754424	128755424	+	565.5	f1_c57bl6.idr	Intergenic	Intergenic	-31878.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	3.00268148513494	3.29985091601408	3.08960549721484	3.0536581231605	3.13451789160106	3.21985309254019	-0.0207248812129645	0.974917114051945	0.99438462381292
Merged-chr6-48445015-3	chr6	48444493	48445493	+	926.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	97.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	5.45381147344054	5.39484423343325	5.94507389072467	5.84314363869164	5.65335924868826	6.02677437589004	0.427170013108488	0.224399248595679	0.619153519154732
Merged-chr11-30057665-2	chr11	30057165	30058165	+	641.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS-int|LTR|ERV1	-31632.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	2.29879549658257	2.42870166809311	2.51660528260865	2.39506755157232	2.23332314536797	2.40076296926169	-0.472594481071197	0.571221358734387	1
Merged-chr8-106140986-4	chr8	106140469	106141469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3995.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	4.31724858981348	4.0040549114692	4.27262229002545	4.22897863075787	3.95510565327867	4.2521274435096	-0.161616699558901	0.741520102247286	0.934868190792048
Merged-chr15-83037040-2	chr15	83036540	83037540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3643.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.41612957324613	4.73751536041617	4.86680634303034	4.53691539722066	4.72084899753305	4.46100963452002	-0.224413813777122	0.608960716201494	0.885053989692691
Merged-chr10-54132845-4	chr10	54132332	54133332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56910.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	4.19485199851625	3.93255503794102	4.13866429511761	3.93315577343159	3.5964595015071	3.70869564498841	-1.06182696879619	0.0470051912803321	0.274489996214041
Merged-chr16-20265263-2	chr16	20264763	20265763	+	749.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23905.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	3.1968873017987	3.05979027595078	3.10041233948988	2.85887010007241	2.8113093486853	2.99611395885529	-1.12986621026749	0.100899829431374	0.423596014496758
Merged-chr4-154934595-2	chr4	154934095	154935095	+	624.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6518.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.92852993001186	6.009222123546	6.29682633927248	6.47255578702847	6.47744821604265	6.72460860139764	0.795866857060929	0.00595132881513158	0.0693749184714861
Merged-chr17-48411190-2	chr17	48410690	48411690	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207219, intron 2 of 5)	intron (NM_207219, intron 2 of 5)	740.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	5.46677593060143	5.84303260175626	6.02684826406025	5.91507059341629	5.77475409040827	6.06597436828744	0.224339964372253	0.502898411047295	0.836691193058519
Merged-chr4-102575321-2	chr4	102574821	102575821	+	976.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	5261.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.377322232305	5.36111221964851	5.43051733069638	5.16022452250225	5.23183391517189	5.46447615167731	-0.207483991974328	0.547212937781397	0.859256588783723
Merged-chr15-12322044-4	chr15	12321582	12322582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025673, intron 1 of 3)	CpG	586.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	8.54303331849568	8.89138437236824	8.51044667743223	8.63058938759602	8.45586561262714	8.57109912665053	-0.153674276068323	0.490080878479203	0.829981473103019
Merged-chr9-57651923-2	chr9	57651423	57652423	+	722.166626	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001304761, exon 2 of 15)	5' UTR (NM_001304761, exon 2 of 15)	1708.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	8.1761769125847	8.03951122039226	8.1913903199324	8.26158739050093	8.69986146669549	8.27922745077863	0.421137948233248	0.0726888083291507	0.354177570032908
Merged-chr19-36834229-4	chr19	36833733	36834733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	1.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	8.45378959635607	8.17470712762873	7.95593951422717	8.4276285786078	8.2102475999722	7.84554498418661	-0.0386268803858528	0.883376630644656	0.973362870329156
Merged-chr7-46958518-4	chr7	46958061	46959061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-43.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	5.49045858317801	5.55300856307674	5.50052438309646	5.53036755762349	5.50146540139139	5.24886592580735	-0.140678672134984	0.673426912767491	0.911417287047018
Merged-chr1-20817391-3	chr1	20816915	20817915	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008563, exon 3 of 17)	exon (NM_008563, exon 3 of 17)	2897.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	4.13216998432311	4.09783269043686	4.46695211724641	4.3472294727514	3.93906914205687	4.32932746174178	-0.0626058368801428	0.900138749966849	0.976728292075907
Merged-chr1-91540542-4	chr1	91540054	91541054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-11.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	5.50306948467531	5.43195924917414	5.56780075726577	5.31941824530882	5.40090727628027	5.13230226453321	-0.386459278499951	0.25868896233546	0.656251800083823
Merged-chr11-35833429-4	chr11	35832965	35833965	+	900.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025936, intron 1 of 14)	intron (NM_025936, intron 1 of 14)	1063.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	5.51391935156123	5.65432856034476	5.18112963653308	5.89209252563336	5.76776023038183	5.63314064593508	0.541420870941234	0.115209843888005	0.453063977042068
Merged-chr16-96083933-2	chr16	96083433	96084433	+	618.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	4.11272258516945	3.97170646133975	3.96008760301303	3.78493988730059	3.76031849425549	3.54126893690162	-0.987891913548618	0.0661164194467726	0.335574907242104
Merged-chr10-117896931-1	chr10	117896431	117897431	+	694.0	f1_c57bl6.idr	Intergenic	Intergenic	-28528.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.60183524411427	5.39078266306662	5.55940971983574	5.52311819237884	5.69519487530923	5.41590181769308	0.0807995899203285	0.808457507158289	0.954683711776353
Merged-chr13-22051141-4	chr13	22050662	22051662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	7932.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	5.0417623524265	4.93669002996354	4.79116665827718	4.89027636342165	4.89973145056942	4.93320069567632	-0.062108478562862	0.870519862181997	0.970084781962666
Merged-chr15-79436768-4	chr15	79436248	79437248	+	965.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	5070.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	4.00674818336955	3.90707126144534	3.62285102266617	3.89695734365043	3.77564486074078	3.69557244276852	-0.221533140965804	0.683628060685747	0.915479407206029
Merged-chr2-90507756-2	chr2	90507256	90508256	+	745.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-28582.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.35463058326229	5.3321262466732	5.43665545005368	5.61649655413119	5.5412973968135	5.13814593145935	0.172337525037487	0.625078286925853	0.892380655043003
Merged-chr6-38433782-4	chr6	38433295	38434295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177185)	promoter-TSS (NM_177185)	-130.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	7.86981733498124	8.1618049982302	7.98846920259979	7.8050666118343	7.86475213460159	7.98569148812328	-0.184140237235471	0.40851709920311	0.782141987816208
Merged-chr6-88306549-3	chr6	88306043	88307043	+	814.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84275.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	4.53586576366012	4.33020441695242	4.66974819917181	4.18608638333155	4.46009303215654	4.66032597309664	-0.170706949519166	0.709730138900723	0.924051782967209
Merged-chr9-15279969-4	chr9	15279478	15280478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-111.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	7.45165884926698	7.73308927255233	7.41150329177767	7.2167589667394	7.50672739308145	7.50978477839883	-0.185891673379511	0.452162107936482	0.809286173636239
Merged-chr3-133547612-1	chr3	133547112	133548112	+	547.0	f1_c57bl6.idr	Intergenic	Intergenic	-3222.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.62573146375811	4.68824055863902	4.7376623662325	4.55293589028002	4.65673731401777	4.94498844648838	0.0871406018172416	0.833017918520957	0.960900298881182
Merged-chr3-136230828-4	chr3	136230322	136231322	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 6 of 16)	intron (NM_001033350, intron 6 of 16)	95244.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	4.05406600853776	3.82285633353776	3.9095410119484	3.62715030465317	4.06514367476909	4.02676273133506	-0.0281861181462851	0.958228796215262	0.990000537228272
Merged-chr15-58017021-2	chr15	58016521	58017521	+	984.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	17273.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	4.89071278916191	4.90944323411993	4.97449410653145	5.25109317027433	5.20368024050841	5.36321414401132	0.727900854679708	0.0433557625632686	0.26158699814114
Merged-chr10-8251750-4	chr10	8251216	8252216	+	768.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 5 of 7)	intron (NM_177387, intron 5 of 7)	267109.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.31241991952347	3.74351384602596	4.02010565861965	4.00283881036935	4.13135582585109	4.22838557355419	0.20541530747114	0.695808329162533	0.919291538728398
Merged-chr3-144699234-4	chr3	144698749	144699749	+	878.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21086.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	7.97561833337179	8.1201241237852	7.9127052188157	7.98600358946663	8.40932293802459	7.98444048852687	0.200496280291838	0.403633290970356	0.778946945820614
Merged-chr4-130918782-6	chr4	130918226	130919226	+	920.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIRb|SINE|MIR	5392.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	7.5584239938571	7.69967836592869	7.6236528469132	7.55177059723739	7.64361164413192	7.58614029309591	-0.0483230304547472	0.825811125277936	0.958953374592769
Merged-chr9-110659683-2	chr9	110659183	110660183	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	B4A|SINE|B4	3180.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	4.08681876136226	4.14933170550622	4.34794412333185	4.74485109326784	4.83989892981255	5.22859273998851	1.86796374157519	3.55309290514221e-05	0.00118590354773796
Merged-chr13-60687003-2	chr13	60686553	60687553	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	84842.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.17609659405284	2.84919460748913	3.18804066916326	2.88199629522009	2.82976946895513	3.31221117568943	-0.256569022076058	0.724368823938268	0.929340093472545
Merged-chr6-99242340-4	chr6	99241855	99242855	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24160.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.96591721275507	5.86881891017955	5.90744847273377	6.31378624839683	6.24623279184552	5.57884613370352	0.320323329158744	0.34643370363041	0.734677492075457
Merged-chr2-58199619-4	chr2	58199088	58200088	+	840.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35614.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	3.86962604123831	3.7493311255681	3.9093832771335	3.93320096048792	3.83839990062628	4.20478094234294	0.462796163183779	0.372029274169574	0.755997445123458
Merged-chr13-9096656-2	chr13	9096156	9097156	+	860.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	2775.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.25915401762451	5.43870937013503	5.34696590818275	5.97880585251246	6.09797092503675	5.41227414307592	0.973487357156078	0.00662199887806767	0.0750363610169556
Merged-chr19-56599595-3	chr19	56599113	56600113	+	628.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025811)	TTS (NM_025811)	51352.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	5.15838187149405	5.48914561004585	5.38683740463238	4.80055305163689	5.17996835489402	5.20503023568138	-0.563463684543955	0.138331883578119	0.497020805986067
Merged-chr2-91084663-4	chr2	91084173	91085173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12005.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	7.90773939139408	7.9340024106834	7.81615970842206	7.97253407358082	8.17472817313706	8.12726269419051	0.292900709923454	0.170768153501742	0.548493650759398
Merged-chr7-100208565-2	chr7	100208065	100209065	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-19042.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	4.2676758633828	4.36388500705529	4.70603725753027	4.32163265004148	4.20266294530444	4.33878930934798	-0.427472161217718	0.355120082758117	0.742113945138654
Merged-chr7-125637861-2	chr7	125637364	125638364	+	903.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34435.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.15462129492328	2.19826185963288	2.28182587611576	2.33601391851464	2.1287120289454	2.42064910222332	0.58837417014128	0.498868416117877	1
Merged-chr1-178369469-4	chr1	178368968	178369968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31653.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	7.72607137297828	7.79716041566943	7.58077005693312	7.50909081733393	7.89820975694675	7.38532729409578	-0.115782533280267	0.648370890979246	0.901766609676507
Merged-chr14-79586155-2	chr14	79585655	79586655	+	694.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1505.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	3.3211921991087	2.90215652938529	4.14864807942113	3.39446077560255	2.9306751597079	3.46406172840517	-0.975024407521378	0.43810780241043	0.800419903410376
Merged-chr1-39536198-2	chr1	39535698	39536698	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_028043, exon 1 of 7)	exon (NM_028043, exon 1 of 7)	497.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	6.69027368766105	6.88644271731855	6.54643624962392	6.97606278816823	6.8420911980356	6.77411957353602	0.225071366121284	0.390818926824002	0.769975715333663
Merged-chr10-128096849-4	chr10	128096358	128097358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	CpG	4075.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.50512062615242	6.59948947803529	6.79428075553353	6.89949713503244	6.84406666345156	6.88158956466056	0.382150147884503	0.134363632218499	0.490077109965232
Merged-chr2-153140183-2	chr2	153139683	153140683	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 10 of 12)	L2c|LINE|L2	-21118.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.00743542756342	3.30120517705703	3.39055584198564	3.07984776412305	3.38180722825226	3.6121282535256	0.516773365747378	0.4429191113348	0.803436014387
Merged-chr2-180710102-4	chr2	180709621	180710621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177852)	promoter-TSS (NM_177852)	-105.0	NM_001289652	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	7.55747108184599	7.779370883582	7.75973613598639	7.60419541813859	7.57078162236734	7.83235582430049	-0.0471101784225137	0.838263217265382	0.962493207106836
Merged-chr5-99268200-2	chr5	99267718	99268718	+	769.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15291.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.09383615966117	5.81746250364069	5.76094284193164	6.07687701832751	6.22328138102253	5.99981245529743	0.352482705851904	0.248916383668419	0.64587234789453
Merged-chr14-61668194-3	chr14	61667689	61668689	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	14184.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.79703439987064	5.62181663918358	5.55466258467049	5.69469766468092	5.75745817648779	6.05974301303733	0.308380229584236	0.341500305557679	0.730861271883589
Merged-chr10-84387552-3	chr10	84387063	84388063	+	706.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	L2c|LINE|L2	52908.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	4.65071387466627	4.67432974047108	4.54580067740493	4.31505620090357	4.12116896423102	4.44502607721626	-0.871230842674621	0.0486821066821011	0.280076106810777
Merged-chr19-12016373-4	chr19	12015879	12016879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20361.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.43301977965157	5.32061684211132	5.74344960520739	5.89272599254828	5.7887587833789	5.64873908526394	0.532386708776464	0.110095918330549	0.443374081115101
Merged-chr1-136136250-1	chr1	136135750	136136750	+	546.5	f0_c57.idr	intron (NM_001039472, intron 1 of 34)	URR1B|DNA|hAT-Charlie	4860.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	6.51137291235577	6.63884770988377	7.09393843490171	7.19382647804665	7.53913920143668	6.92513075036822	0.744654674875829	0.0143490830525825	0.128825906629184
Merged-chr1-9772939-4	chr1	9772444	9773444	+	924.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24562.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	3.78777655398671	4.03442397367749	3.88374500672329	4.0833694332053	3.91770323980579	4.00329043066759	0.278312613095692	0.582721206609487	0.873826743013405
Merged-chr9-40642835-7	chr9	40642305	40643305	+	918.9541019999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43159.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	5.19927496742898	5.08382305528385	5.03064197278509	4.70695914097747	4.19071829350499	4.14492836214931	-1.71701641520192	0.000197991914676706	0.0049726867601628
Merged-chr18-46551010-2	chr18	46550510	46551510	+	694.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	23523.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	3.11206084600885	3.05384855944508	3.06678579745254	3.04667583963058	2.8113957252452	2.69290664817208	-1.03631381666217	0.157091422275075	0.528046500148035
Merged-chr10-91139675-4	chr10	91139183	91140183	+	996.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15720.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	6.3363880672729	6.58993684156925	6.36065764505133	6.46274951676654	6.36855457367968	6.14898551457718	-0.160599407407705	0.570688349411532	0.869253690275099
Merged-chr11-82915153-3	chr11	82914651	82915651	+	703.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178680, intron 5 of 19)	intron (NM_178680, intron 5 of 19)	3898.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	2.19103519602624	2.19574779218417	2.46961441954927	2.23807422998245	2.05807107488692	2.35713914979606	-0.46715834474445	0.60198440459056	1
Merged-chr8-4370349-4	chr8	4369848	4370848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20760.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	5.30720288827785	5.32140865219643	5.43845616249265	5.8099348832812	5.49559183586648	5.74581192083566	0.631231019525503	0.0588347065051889	0.31391968577017
Merged-chr1-24100433-4	chr1	24099930	24100930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-89.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	5.60462421450186	5.57946568195783	5.23399733905514	5.24953320876419	5.05111163212818	4.80046498209625	-0.877033761716706	0.0208630791616847	0.165996131543049
Merged-chr8-69953431-3	chr8	69952933	69953933	+	701.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	20950.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.96068133513608	3.741163349127	3.53736068905324	3.46774323241743	3.46052079964534	3.60939775389102	-0.890028153144347	0.122536435405684	0.468308456606476
Merged-chr7-90426457-4	chr7	90425959	90426959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027298, exon 1 of 1)	5' UTR (NM_027298, exon 1 of 1)	147.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	3.94961494889245	3.71392582330379	3.73720522135849	3.51597126096747	3.97357980958508	4.05076467994543	0.188796463387366	0.738951255629355	0.934121144256679
Merged-chr11-50207343-3	chr11	50206847	50207847	+	872.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290769, intron 3 of 7)	intron (NM_001290769, intron 3 of 7)	3473.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	3.18976319837528	2.67062970644078	2.95076778392132	2.81437652976969	2.69184418039422	3.02371372460796	-0.524754217222416	0.491841488891647	0.830778358974458
Merged-chr5-63827181-4	chr5	63826677	63827677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	14682.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	7.57116134297077	7.39646608991473	7.39129851853121	7.75100719374099	7.73603030690332	7.76493256097558	0.423532524109825	0.0560627289576457	0.304927032177447
Merged-chr2-77281211-4	chr2	77280739	77281739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-647.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	7.18112415656522	7.11831791341487	6.93098327379625	6.94835153655767	6.81331326104027	6.79521954752908	-0.3557032962172	0.15106224765768	0.518347890904894
Merged-chr10-67052607-3	chr10	67052130	67053130	+	734.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44358.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	3.63935365100556	3.59478687088073	3.70589714448361	3.62366870091708	3.37601371432843	3.51122303678822	-0.504800249280726	0.373979656057358	0.757702871295154
Merged-chr2-132114184-4	chr2	132113711	132114711	+	844.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	(CAAAAA)n|Simple_repeat|Simple_repeat	30897.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.8394676861228	6.98573247474782	6.59205233806497	7.01740004723178	7.51228235642015	7.02803904207616	0.597084919078486	0.0366540709872127	0.235623604658837
Merged-chr2-21205709-4	chr2	21205219	21206219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	-5.0	NM_001001297	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	6.94741942977457	6.77376198819864	6.33957550673239	6.45398339031648	6.41102551424674	6.43948536898744	-0.462476360583938	0.111232913202631	0.445472081717353
Merged-chr2-31094947-3	chr2	31094533	31095533	+	743.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	B1_Mus2|SINE|Alu	1467.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	2.90099267099601	2.79546251780973	2.81591165845913	2.85023818608944	2.93999153046833	2.9496247061969	0.369971929949912	0.594948494211034	0.87924603206665
Merged-chr14-51065974-1	chr14	51065474	51066474	+	558.0	f1_balb.idr	Intergenic	Intergenic	5468.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	3.71309859257441	3.76919480608994	3.5790328518392	3.36699414259557	3.53736877289743	3.70209272615783	-0.545068313735385	0.340552366000616	0.730195100630795
Merged-chr2-128719507-4	chr2	128719021	128720021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20606.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.18018271893845	7.01190056660964	7.19395772009825	7.14507376235463	7.38889538279625	7.06248802875846	0.130524557955613	0.599311931131383	0.880934255570735
Merged-chr7-44247249-3	chr7	44246736	44247736	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025880, intron 1 of 5)	intron (NM_025880, intron 1 of 5)	514.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	6.9507602927121	7.24252367761676	7.08379394852425	6.88715985224991	6.82185819834199	6.95673438148556	-0.327185196803028	0.189090625661532	0.574710624978806
Merged-chr15-83031624-2	chr15	83031124	83032124	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1674.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	5.1328711019708	4.97816172234046	5.69072962373219	5.33620074083276	5.426933308935	5.75167798392934	0.427576856080333	0.282586602697001	0.680464941027697
Merged-chr15-57898138-4	chr15	57897628	57898628	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5710.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	4.01793020421898	3.73338391990422	4.01308978512998	3.79756354926252	4.07189212537495	3.93704114299983	0.0635027596983886	0.903172804898093	0.977756599430303
Merged-chr7-140948397-4	chr7	140947827	140948827	+	909.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_053088)	TTS (NM_053088)	1912.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	5.28020732591493	4.6748112469564	4.90480007072317	4.65924528809574	4.42174308657792	4.48446450030685	-1.05740015826059	0.016495119876215	0.142068723181876
Merged-chr18-39251097-4	chr18	39250574	39251574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	236171.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.12971757914464	6.01649351317666	5.89643846560409	5.94679050573636	5.94224369449297	5.80521451462162	-0.2076454490708	0.484948557661696	0.827243194947601
Merged-chr13-55100223-4	chr13	55099645	55100645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 1 of 12)	CpG	155.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	7.13215485394896	7.30009140774586	7.06492751442093	7.23810710832291	6.86812469965859	6.8536276057824	-0.260878057668513	0.317495861202643	0.711322568148047
Merged-chr7-35554923-4	chr7	35554437	35555437	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033080, intron 1 of 2)	intron (NM_033080, intron 1 of 2)	991.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	7.00042389350484	7.09691690288189	7.02067926709259	6.85037959765811	7.10458059156114	6.86798880511385	-0.132504544370691	0.593563527698866	0.878561868734297
Merged-chr6-53589943-4	chr6	53589392	53590392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16518.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	7.6206269630555	7.81191790478597	7.44629367238079	7.45023405660224	7.7751391141967	7.15795148292702	-0.206437160463206	0.447247392152594	0.806316645191341
Merged-chr4-156198063-4	chr4	156197591	156198591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-603.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	8.2231508802996	8.08044194420499	7.95843319558815	8.00256279845033	7.93439130467756	7.88841755468931	-0.215964427696594	0.317513875814292	0.711335036179844
Merged-chr6-120037098-4	chr6	120036611	120037611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1544.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	6.60572425575827	6.80555641033837	6.74343366796547	6.56722479767532	6.49585058025713	6.52217624415705	-0.306286518655239	0.235547019225997	0.631769860289359
Merged-chr13-42015693-4	chr13	42015197	42016197	+	933.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36324.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	5.11078825022991	5.18296203484718	4.72913125646829	5.04088233373838	5.0236733270767	5.03101406332486	-0.010463075374209	0.978446862717364	0.995146803081243
Merged-chr10-18188739-4	chr10	18188226	18189226	+	858.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195036, intron 3 of 20)	L1MC5|LINE|L1	22164.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	4.12035530414128	4.20816036896343	3.8946214715282	4.04917202557273	4.3305236906085	4.59002068162375	0.674516598936525	0.182789739841828	0.565650567468555
Merged-chr9-45272377-4	chr9	45271884	45272884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3235.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	6.27273857891231	6.35210913856061	6.38951441722269	6.14823408032513	6.09986374991463	6.13075531064742	-0.354665159086325	0.196916757999837	0.584803931089222
Merged-chr2-144219454-4	chr2	144218920	144219920	+	879.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30130.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	3.43170002595454	3.16087911389968	3.41410176268478	3.72058453922636	3.34860359813067	3.74652372411866	1.00937957635283	0.103595151760341	0.429151916144304
Merged-chr2-59881755-2	chr2	59881255	59882255	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159636, intron 1 of 10)	intron (NM_001159636, intron 1 of 10)	851.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.48603586273136	4.43767126572197	4.63162106557053	4.70658132146813	4.85620404878913	4.4420220094656	0.427075573927823	0.320428474095588	0.714287579300391
Merged-chr10-18996579-2	chr10	18996065	18997065	+	675.25	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	15398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.61112932576529	3.54344594237936	3.44058226985486	3.49635679430144	3.52432153699912	3.39692305950502	-0.218534592652301	0.704834889096745	0.922557478283525
Merged-chr6-87536295-4	chr6	87535785	87536785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3026.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	7.83406937097303	7.52616026251333	7.6909264737659	7.58885050582449	7.64337227192464	7.63894484275134	-0.0955204999501257	0.674833991355037	0.911865018776908
Merged-chr3-144677676-4	chr3	144677202	144678202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42633.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.82592350700537	6.79868291726122	6.35179649555775	5.71240187959207	5.33615917180242	5.26620300739534	-2.11857695314713	2.71323867606558e-10	3.27667871927525e-08
Merged-chr14-33392975-3	chr14	33392473	33393473	+	810.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016700, exon 6 of 12)	exon (NM_016700, exon 6 of 12)	18051.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	6.09247758869074	6.25350293078928	6.08773219475715	6.80733404441964	7.22468833535346	6.50630223005408	1.1904967101044	0.000112203330670346	0.00312143588713412
Merged-chr17-29382617-2	chr17	29382105	29383105	+	636.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21691.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	1.89408272657022	1.75051511357112	1.94126788972185	2.07369177510884	1.87137126195723	2.15201614608987	1.44336357043898	0.150655297440619	1
Merged-chr5-43737698-3	chr5	43737226	43738226	+	755.866699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359906, intron 36 of 37)	intron (NM_001359906, intron 36 of 37)	44423.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.43014782053132	5.67363147357769	5.72018397316479	3.85155659175207	3.78639621728494	4.06261784082259	-4.87272102851667	3.71978846644074e-16	1.289650661315e-13
Merged-chr2-35447644-2	chr2	35447144	35448144	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	13805.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.28792632417665	3.5427268345407	3.26226696240476	3.42007525459268	3.24455012117663	3.33488464862119	-0.168900810870828	0.784410968171537	0.947576747080331
Merged-chr6-149355333-1	chr6	149354833	149355833	+	947.0	f0_c57.idr	Intergenic	Intergenic	45919.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	3.40058878114738	3.64425601308367	4.0770701553269	4.48014488087863	4.49819838639211	4.41225183695694	2.22218352946868	9.67769296953905e-05	0.00275774478290892
Merged-chr10-87830191-4	chr10	87829723	87830723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-28042.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.25874883741673	7.16867141399372	6.98380672531052	7.02277912015878	7.26342058418872	6.94240260825544	-0.0837347236533676	0.741529788053339	0.934868190792048
Merged-chr8-88635053-2	chr8	88634527	88635527	+	731.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	1101.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	5.12008651724536	4.93930832583428	5.42937926591265	6.16630876574322	6.32824633912695	6.18083280932002	1.97995010052802	2.42992040055727e-09	2.49308035375548e-07
Merged-chr16-38394374-4	chr16	38393879	38394879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32189.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	6.20447132370007	6.29220387966271	5.72436743198633	5.86276027924872	5.83478513324406	5.94334078755842	-0.405358258709094	0.205924403130892	0.596518913737799
Merged-chr11-95823337-2	chr11	95822837	95823837	+	874.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1163.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	3.62387099583786	3.43506834392717	3.45423142276237	3.63601074378329	3.1290447235513	3.4129788831544	-0.376083400013375	0.551011613495882	0.860923422556561
Merged-chr5-101968105-4	chr5	101967610	101968610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	MTD|LTR|ERVL-MaLR	101811.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	8.16231598997082	8.11658731991849	8.01412996466868	8.06137733615411	8.30683451088579	7.65190226496527	-0.0786128273630734	0.75692162445679	0.939748351653247
Merged-chr4-154944397-4	chr4	154943885	154944885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16308.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	7.23337995878852	7.4645110103823	6.97758860685524	6.66219088590156	6.87315308902209	6.45304590184504	-0.858612610340457	0.00226886196689012	0.0340157597371159
Merged-chr17-67346589-2	chr17	67346089	67347089	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7870.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.27539170791073	8.58670512299603	8.2196322130999	8.25963272880375	8.57140561025808	8.1675786265877	-0.0337000561050788	0.888505699877079	0.974043020158646
Merged-chr4-150487084-2	chr4	150486584	150487584	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165090.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.86524389614802	7.17959162577265	6.6138153186236	6.7813313603722	6.9484065344183	6.54612906008934	-0.214709795007356	0.46091672250505	0.814802506471053
Merged-chr13-8866889-4	chr13	8866378	8867378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	4166.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	5.88805915847572	6.07063297181257	5.72193400501652	6.34173057339117	6.47684665194358	6.43462529450679	0.853474143009336	0.00365219986822939	0.0486626175544528
Merged-chr5-19896053-4	chr5	19895569	19896569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170746, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-11449.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.93068715670671	4.79636751104869	4.71716352763641	5.03265578935736	5.12648166692312	5.42039994524973	0.795112268703688	0.0404379038939893	0.250559022057567
Merged-chr19-5882174-4	chr19	5881662	5882662	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	4340.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	4.70280759458102	4.95352960892398	4.97857205284942	4.61550811485179	5.00846376250178	5.26278181251538	0.222593558703187	0.596782620487455	0.880054732574571
Merged-chr2-162939812-4	chr2	162939321	162940321	+	986.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3644.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	4.45958098686528	4.41867950194078	4.70612075921346	4.00289434338578	3.87306456484545	4.390381578559	-1.17780110893862	0.0170888521487212	0.145461642430651
Merged-chr9-113706310-2	chr9	113705810	113706810	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164678, intron 1 of 17)	RSINE1|SINE|B4	1949.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	4.26518253498366	4.5840126808705	4.5490426178386	4.17722515969928	4.18536870927491	4.65232113136691	-0.324673483641698	0.495616431329672	0.83254120142987
Merged-chr14-72601956-6	chr14	72601478	72602478	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	108025.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	7.87829537110952	7.84466596759824	7.42813842215467	8.16258974173354	8.50168693116747	7.45070959738138	0.542281418319745	0.088919558845185	0.395997572917478
Merged-chr12-85375004-4	chr12	85374404	85375404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-187.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	8.79345346861862	8.6818187538635	8.38116850007671	8.57433197059733	8.74593099618583	8.17511790096937	-0.148141484759034	0.555904106918936	0.863466091383778
Merged-chr12-77790175-2	chr12	77789675	77790675	+	889.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	380034.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	2.7156898755366	2.67460829985933	2.84352070702026	2.66454135535949	2.75966091345449	2.91554077438218	0.196627895440976	0.787581333441202	0.94877064431094
Merged-chr17-47507414-2	chr17	47506914	47507914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	2363.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.69237855647697	4.79807442457082	4.85275458789518	4.46374092482822	4.37977105751482	4.73589378400385	-0.616562569369477	0.142554791311071	0.503981095998112
Merged-chr6-71442236-4	chr6	71441758	71442758	+	926.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1621.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	5.56479109048456	5.50401183087004	5.47221587913533	5.53929069288033	5.46107817649848	5.61935101944021	0.0352915786093473	0.913070918082091	0.980541282138254
Merged-chr2-160157291-4	chr2	160156767	160157767	+	962.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140614.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.05118814176942	4.95802575058008	5.2190206491554	4.80576549629406	4.48906326536983	4.88746398801131	-0.776032670302269	0.0546252420341623	0.300164475742871
Merged-chr4-136172725-2	chr4	136172225	136173225	+	938.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177733, exon 1 of 7)	5' UTR (NM_177733, exon 1 of 7)	451.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	3.05328796425701	2.75897692564594	2.84115324291379	3.39284118243549	3.57173296443237	3.35705537317437	2.53867908814922	0.000682892504370418	0.0134299502490319
Merged-chr15-76698758-1	chr15	76698258	76699258	+	1000.0	f1_balb.idr	exon (NM_182805, exon 8 of 11)	exon (NM_182805, exon 8 of 11)	2032.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	4.05064933261801	3.8808518835694	4.21375715586304	4.07890552743139	4.05477833447628	4.23734512354345	0.212823519664946	0.66441004025021	0.907585158243155
Merged-chr2-131494626-3	chr2	131494173	131495173	+	922.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	2811.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.29318095133523	4.12810080983115	4.0051154180414	4.41299941942207	4.0304587715351	4.31362174666266	0.283358445057151	0.563040109109863	0.865762574483528
Merged-chr7-127195018-2	chr7	127194518	127195518	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357817, intron 3 of 6)	intron (NM_001357817, intron 3 of 6)	1059.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	3.70543666788686	3.4636580577711	3.30318430564412	3.50138433138753	3.50418143986639	3.90409824941942	0.477844536101173	0.437104819941961	0.79976715856888
Merged-chr7-19077296-1	chr7	19076796	19077796	+	1000.0	f1_balb.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1096.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	4.8526527940082	4.65014933939224	5.28937556816698	7.00082021813512	6.92478280512482	6.49938333647687	3.49489471392783	2.80513168482679e-22	2.88159749667984e-19
Merged-chr2-159593021-4	chr2	159592525	159593525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-354316.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	5.37449900901018	4.95577888575932	4.87725029091528	4.70456071131006	4.29004129296547	5.01430548568993	-0.889776890317141	0.0524430673879796	0.29282906585402
Merged-chr17-71190758-4	chr17	71190157	71191157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6679.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.07279743090244	6.98858053541702	6.7129658333021	7.02218930324234	7.36229556877967	7.04184685279851	0.329390783073804	0.215466261200619	0.608899282194137
Merged-chr11-115005296-4	chr11	115004790	115005790	+	907.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3410.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	5.89377847928223	5.78987950701461	6.03000234512642	5.92362761002888	5.92074632019389	5.85840921315391	0.00551031000621969	0.985300026292925	0.996873682039026
Merged-chr19-4283266-4	chr19	4282767	4283767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-130.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	5.04452002256653	4.62763541004667	5.07687180836955	5.03064033157826	4.64927675593794	5.0753395567428	-0.00711170228349794	0.986552965681298	0.997063455776714
Merged-chr6-113382077-2	chr6	113381577	113382577	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026552, intron 3 of 5)	intron (NM_026552, intron 3 of 5)	3964.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	2.87900973030838	3.04235232189469	2.94604698335906	2.90263371816992	2.77992756981633	2.76981856487662	-0.692490549847543	0.32750769515258	0.7197087001184
Merged-chr16-13287233-2	chr16	13286733	13287733	+	662.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	22154.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	5.55788489062871	5.6954643173763	5.66671950174408	5.08456560358783	5.36204119082218	5.54234387419226	-0.581570641237551	0.0919355384992583	0.403852406686004
Merged-chr6-136814464-2	chr6	136813964	136814964	+	673.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_021714, exon 12 of 12)	exon (NM_021714, exon 12 of 12)	6216.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	3.79186544261175	3.79625654509382	4.15792631839156	3.90842298487438	3.48699518235117	4.13987698403852	-0.168528005873805	0.771487464593857	0.943614978016208
Merged-chr3-90265110-4	chr3	90264618	90265618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-117.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	8.24160763366566	8.08712020117554	7.76496648885811	8.10134832331	8.1271797877443	7.95516931347905	0.0176739719052986	0.940230779192259	0.986792088790777
Merged-chr15-101259914-1	chr15	101259414	101260414	+	543.0	f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-6932.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	4.20696495144703	4.12853987284144	4.41472281230947	4.44965047575256	4.42389135236096	4.67650197459221	0.697682802575798	0.122197998018826	0.467637907333417
Merged-chr4-114998179-2	chr4	114997679	114998679	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1939.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	2.32455147172175	2.43974840428792	2.43578046632487	2.5030097660381	2.58418962225159	2.75804537039207	1.30920013872002	0.106734297053996	1
Merged-chr11-117655534-3	chr11	117655016	117656016	+	835.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 1 of 21)	CpG	1227.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	5.80574945302762	5.32483136408252	5.78284345220538	6.25772067295745	5.33884673298534	5.79466516555015	0.3582580943409	0.371889187623267	0.755841610252976
Merged-chr3-65527809-1	chr3	65527309	65528309	+	1000.0	f0_balb.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-638.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	7.87077848056232	8.07488595788126	7.89398054814121	7.91562836818613	7.91195252061432	7.76718441504215	-0.117279756456923	0.591240004342518	0.87747968039476
Merged-chr8-60982381-2	chr8	60981881	60982881	+	896.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	930.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	6.44063333175592	6.80189065052815	6.48740280794287	6.69299607382501	7.06986203273679	6.61877174680139	0.357439464962159	0.219192912110392	0.613227215079062
Merged-chr5-146753166-2	chr5	146752666	146753666	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 4 of 8)	intron (NM_011669, intron 4 of 8)	41790.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.92030484326793	3.12757427714032	3.06181242250006	2.92358913751833	2.93504485504785	3.18985498750611	-0.108163435916202	0.873693180250839	0.970440430875665
Merged-chr8-120511033-4	chr8	120510533	120511533	+	940.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	PB1D7|SINE|Alu	22167.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	2.79773413880643	2.55810901546954	2.80026794655974	2.77534611276605	2.89219515937087	2.87323400761158	0.659774836056033	0.371397326631682	0.755584361766938
Merged-chr10-95298620-4	chr10	95298094	95299094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25115.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	7.72515432549616	8.08038438618301	7.66954891333472	7.57267498564657	8.27069385708621	8.0353580528419	0.218697704851532	0.433078315329664	0.797623786395605
Merged-chr8-61643390-4	chr8	61642929	61643929	+	695.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-52260.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.46694464124399	3.5158398496916	3.4452748546829	3.35800913294668	3.13130703110994	3.29035258965721	-0.870503024095042	0.153467345695011	0.52244360796471
Merged-chr9-105122521-2	chr9	105122028	105123028	+	751.666626	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	9277.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	6.70763383272068	6.61498213130315	6.65249455571624	5.59730116359037	6.01472891112936	5.88249819723536	-1.34874019193617	6.0600783550349e-06	0.000260997411887031
Merged-chr1-171391193-2	chr1	171390698	171391698	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	2238.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	5.65571516441872	5.44043820784	5.68755458847105	6.02876846471353	5.94225741258473	5.6397189207383	0.536918768227643	0.0978911604638179	0.417248724505521
Merged-chr15-53399307-4	chr15	53398824	53399824	+	786.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-53141.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.76531080454094	5.82438881362402	5.78514830975188	5.81278971599415	5.89662883758182	5.8716554417132	0.12412812640874	0.67812182659979	0.913351670094672
Merged-chr8-75031571-4	chr8	75031058	75032058	+	912.883301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2128.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	5.2666277414894	5.24806562869554	5.14691766757229	5.28180622251485	5.57184797554743	5.14163232767981	0.266781899878062	0.460950326553259	0.814802506471053
Merged-chr5-3474135-1	chr5	3473635	3474635	+	770.5	f0_balb.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-69698.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	3.42547202276026	3.58363169127622	3.71555996947431	3.4265118523765	3.19160061536244	3.42240699206007	-0.873088539836753	0.148601885646361	0.514324100530861
Merged-chr2-73371719-4	chr2	73371223	73372223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14757.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	6.26567060637514	6.71586043948008	6.61214870669383	6.36527143254923	6.62587585731578	6.32743637100559	-0.144204381388556	0.624091339719758	0.891819943546416
Merged-chr11-80085867-4	chr11	80085360	80086360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3540.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	6.02834471546028	6.15074846703802	6.19728044136732	6.051822819207	6.10345592904451	6.27675587867781	0.0299279579891446	0.916779818889571	0.981431795618389
Merged-chr4-135973837-4	chr4	135973310	135974310	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1216.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	6.66568711441047	6.94843677515362	6.59288634327755	6.52971538860966	6.71282456573448	6.39250851165563	-0.300960158504233	0.280075124347093	0.677810800612905
Merged-chr7-27804820-4	chr7	27804322	27805322	+	916.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2374.0	NM_027703	71163.0	Mm.440493	NM_027703	ENSMUSG00000030604	Zfp626	4833408D11Rik|4933426I21Rik|7630402I04Rik	zinc finger protein 626	protein-coding	5.5477318899145	5.54756474022511	5.98418913063464	5.5302943090796	5.30180518908223	5.84784852226861	-0.246246333578643	0.497689179931911	0.833770467452658
Merged-chr12-80812693-2	chr12	80812193	80813193	+	894.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	22161.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.41664024510084	6.47295806060075	6.61255453501934	6.30272397939989	6.61195059889868	6.50259305727082	-0.0238234183676511	0.930700346069761	0.984649701786071
Merged-chr4-123750975-4	chr4	123750458	123751458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-659.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	6.71019151020136	6.57898291726449	6.78424306024862	6.8124134604105	7.16291479404319	6.78153043887638	0.391605093137061	0.144473440180015	0.507214386763159
Merged-chr12-112861008-3	chr12	112860500	112861500	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019925)	promoter-TSS (NM_019925)	-84.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	2.91563850225669	3.03651308505473	2.83462640570692	3.13076182382513	2.89833909530989	3.03207781671478	0.40207274240128	0.561919815724425	0.865601232581785
Merged-chr10-76442853-4	chr10	76442357	76443357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282992)	promoter-TSS (NM_001282992)	55.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	7.15746716685506	7.59655431239131	7.08208943622978	7.24795469637994	7.37446653014045	6.92720890583429	-0.151663894194369	0.589674362889164	0.876939185846215
Merged-chr13-41550733-4	chr13	41550231	41551231	+	844.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-55485.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.84634773139773	5.89069994802554	6.22508524944817	6.31058354661351	5.99402854415711	6.37818297533138	0.413186843778619	0.186046991844506	0.570545022570215
Merged-chr1-85687597-2	chr1	85687090	85688090	+	843.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 11 of 19)	intron (NM_013673, intron 11 of 19)	37602.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	3.56471025766544	3.74202839689756	3.7210144321747	3.57132456498538	3.52581214359138	3.83901349518989	-0.114106423174939	0.838148730529834	0.962431352564932
Merged-chr1-143922084-2	chr1	143921582	143922582	+	607.5	f0_balb.idr|f0_c57.idr	Intergenic	B3A|SINE|B2	82067.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.36687927251277	3.2561088008515	3.07522370234322	3.2827821143255	3.35813666252985	3.27090866109808	0.251185761157353	0.691362613753592	0.918275389711443
Merged-chr13-6241654-4	chr13	6241167	6242167	+	883.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-306490.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	3.95218156328055	4.04719805687504	3.77832358922929	3.6287098857623	3.44410727753771	3.57913418432397	-1.35917450441535	0.0145033633546927	0.129679331400953
Merged-chr6-124993539-4	chr6	124993022	124994022	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3198.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	5.59428044080133	5.34357326601586	5.22375787849254	4.4195142665763	4.42778475719857	4.70747549976232	-1.98612011665056	8.50981118754588e-07	4.70800777455663e-05
Merged-chr15-91190267-3	chr15	91189798	91190798	+	793.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 1 of 9)	intron (NM_011994, intron 1 of 9)	1709.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	5.63167554942666	6.02566867362095	5.54299313947265	6.0563709280606	6.57258917102478	6.03817594968826	0.854821353321659	0.0144606633355646	0.129436625949404
Merged-chr15-30467449-2	chr15	30466949	30467949	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	294856.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	2.99366955246692	3.05846534734119	2.88262751200719	3.06396083216933	2.91622444723189	3.30433836449651	0.512574397342397	0.458885607130406	0.813236440920954
Merged-chr1-80659994-1	chr1	80659494	80660494	+	597.0	f0_balb.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5358.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	6.27546874104164	6.57450870175084	6.56082000341457	6.54362235993237	6.70771967129161	6.70107067671618	0.285774347102949	0.292018385362412	0.689253845324812
Merged-chr8-119834656-2	chr8	119834156	119835156	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5923.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	3.62029452196508	3.39570103758129	3.89604284967511	3.43290504838119	3.63957338207028	3.51716617740755	-0.381241553743742	0.522877222972556	0.847822517072047
Merged-chr4-136120874-1	chr4	136120374	136121374	+	584.0	f1_c57bl6.idr	Intergenic	Intergenic	-22948.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	4.99520491823607	4.76314503874707	4.55651530398662	4.82335949054504	4.38939588301843	4.490849392673	-0.49592607906575	0.263281764895544	0.661289238308673
Merged-chr2-165921948-2	chr2	165921448	165922448	+	854.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-37110.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.36227601402681	5.98584808033158	5.89891610348472	5.75498206421337	5.76148029701611	6.00759185124401	-0.467280967857825	0.144390921845794	0.50717662222064
Merged-chr11-106151780-2	chr11	106151280	106152280	+	768.6999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 14 of 15)	intron (NM_011947, intron 14 of 15)	8147.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.2694829188674	3.28582471850287	3.01912545648129	3.10712088719746	3.01122872403424	3.53877381289665	0.137225102822551	0.842473628974892	0.963031568058414
Merged-chr2-120730879-3	chr2	120730413	120731413	+	888.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026891, exon 2 of 28)	exon (NM_026891, exon 2 of 28)	604.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	5.6728283631615	5.58537911030905	5.90519840087004	5.75975498662759	5.28427015021956	5.62080913798954	-0.292157986235087	0.399191407838981	0.775712434823128
Merged-chr18-64962057-1	chr18	64961557	64962557	+	659.0	f1_balb.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-61470.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.67964196816623	4.76937628080307	4.3832176082422	4.75541508196021	5.12080044313672	4.87896600231587	0.685426444248581	0.107532259271644	0.437961048921927
Merged-chr11-46449036-3	chr11	46448544	46449544	+	649.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5887.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	3.82423809162632	3.72699480846301	3.70099352382998	3.51791596121699	3.48258651395707	3.96363969621845	-0.303457632714771	0.596441945641339	0.879911021114935
Merged-chr19-53313877-4	chr19	53313389	53314389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	2444.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	8.6570373335308	8.64865694113244	8.18829088330358	8.03962572745063	8.37402219521547	7.93900569867596	-0.535089002448527	0.0350007871054456	0.229571613863307
Merged-chr18-38445133-2	chr18	38444633	38445633	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 2 of 7)	B4A|SINE|B4	26226.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.53697623022483	3.75936117853947	3.70614507231404	4.4830894466904	3.73894551319929	3.93949830423031	1.30156499422752	0.0250750027931429	0.187326345161774
Merged-chr9-62058281-4	chr9	62057787	62058787	+	941.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033320, exon 3 of 3)	3' UTR (NM_033320, exon 3 of 3)	12319.0	NM_033320	93683.0	Mm.24411	NM_033320	ENSMUSG00000032252	Glce	1110017N23Rik|AI747411|C130034A12Rik|Hsepi	glucuronyl C5-epimerase	protein-coding	4.44665826503999	4.7519535909121	4.46759460176374	4.8484519559223	4.62853323349384	4.44525235163395	0.207381747155984	0.636643503475393	0.89720767300409
Merged-chr5-101968675-4	chr5	101968180	101969180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	101241.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.8593178755373	7.76999360167539	7.58127480797059	7.81271257018799	8.16795109547211	7.24045710381255	0.0906137977616376	0.7604066182718	0.940748149958152
Merged-chr5-121500916-4	chr5	121500392	121501392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	2088.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	5.6380731555309	5.95519042436214	5.78945278728329	5.58485894422606	5.38479014843079	5.15875647230628	-0.759889013555395	0.0277637297875916	0.198843555531582
Merged-chr1-165935092-2	chr1	165934592	165935592	+	804.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198934)	promoter-TSS (NM_198934)	-144.0	NM_198933	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	3.06878532611049	2.90411768739082	2.77009549049747	3.01800218169546	3.01914779957356	3.09343165625126	0.542272117596314	0.43813557789195	0.800419903410376
Merged-chr1-118559722-4	chr1	118559212	118560212	+	908.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-68233.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	5.71189678411147	5.6035364957827	5.77654202923501	6.1000558574886	6.039216594116	5.61892696758059	0.452924197790976	0.16129054154274	0.534085481473864
Merged-chr5-121190609-2	chr5	121190109	121191109	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011202, intron 1 of 15)	intron (NM_011202, intron 1 of 15)	788.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	5.89461062004669	5.61613211845768	5.77989546209472	5.46292359340912	5.11255164994971	5.52554333615717	-0.758687410850966	0.0281975532120993	0.200867181594846
Merged-chr17-47783691-2	chr17	47783191	47784191	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-2053.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	3.24326248906646	3.00070307185209	3.57497310630048	3.05708446900748	2.91446489684603	3.44826636698434	-0.54638072689291	0.445859052800664	0.805424390221004
Merged-chr1-157382118-1	chr1	157381618	157382618	+	550.0	f0_balb.idr	intron (NM_177644, intron 1 of 17)	B4A|SINE|B4	-30234.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	3.54112303762198	3.56614123768172	3.29118307878766	3.04238737998808	3.01173970072367	2.99092768079982	-2.03027550694978	0.00282638384140362	0.0401944533713061
Merged-chr2-73428463-5	chr2	73428043	73429043	+	799.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25346.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	2.2085749436554	2.21308771266267	2.48066299994022	2.34934823056951	2.2047714268452	2.16476164699557	-0.403031129108353	0.64622003109832	1
Merged-chr4-12424182-4	chr4	12423681	12424681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-252166.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.22514768333808	5.19717694674988	5.09722773659845	5.38437948312398	5.23391138946154	5.35733764793125	0.289773666939937	0.404883194825277	0.779791650050306
Merged-chr1-191574513-2	chr1	191574013	191575013	+	897.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305233, intron 1 of 15)	intron (NM_001305233, intron 1 of 15)	1031.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	4.86819763494434	5.22442883988891	5.35924193463816	4.91487329561414	5.01700244513072	4.93891814771777	-0.420512159379135	0.279658193793576	0.677333692015015
Merged-chr7-97480922-4	chr7	97480412	97481412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027256)	promoter-TSS (NM_027256)	-44.0	NM_027256	101861.0	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	4.79992190196485	4.91070701791216	4.99854376060732	4.66054004108876	4.88132412706606	4.46965695631669	-0.464973243327931	0.264305314022179	0.662221571944713
Merged-chr1-60658573-3	chr1	60658030	60659030	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87858.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	4.61236758500337	4.31309480222384	4.54016357708369	4.75374333777839	4.46700191705884	4.38913832983436	0.139041131403138	0.754751080924467	0.939085277630849
Merged-chr5-140387515-2	chr5	140387015	140388015	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172277, intron 1 of 10)	(GGA)n|Simple_repeat|Simple_repeat	1793.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	5.35829232928287	5.40265931788241	5.57318272576893	5.36061848497873	5.20558264658665	5.21968738449847	-0.35049847703246	0.306375952621175	0.702555538381268
Merged-chr19-5570917-2	chr19	5570417	5571417	+	684.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	2893.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	4.89639916833867	5.02793665641608	5.31968034168439	5.47635977011147	5.26545968616593	5.1258710449605	0.450118469072783	0.231279522061552	0.627115927646807
Merged-chr2-38602164-3	chr2	38601665	38602665	+	957.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41741.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	4.44955219082837	4.74720338433295	4.58139349881859	4.60455453383418	4.86028530687105	4.60666793785841	0.245677348162923	0.56295943421019	0.865755360453189
Merged-chr8-70869670-4	chr8	70869186	70870186	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026964, intron 2 of 4)	intron (NM_026964, intron 2 of 4)	3804.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	2.29124858192154	2.34908391642305	2.43272329957961	2.21351637046692	2.08893487352433	2.31586395022412	-1.07962403917801	0.21984009669886	1
Merged-chr3-36572156-4	chr3	36571651	36572651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027810)	TTS (NM_027810)	887.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	6.04151368816668	5.69768097703739	5.76885334262908	6.12556646138197	6.1175534902629	5.98120985965834	0.40331476837856	0.188239103596802	0.573673198259632
Merged-chr14-46916185-2	chr14	46915701	46916701	+	717.966675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	33236.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.15314980459993	6.19810728500383	5.93603595578084	5.51096025912934	5.71498119141699	5.82625755586372	-0.745765546261081	0.0161564415686551	0.139773881268939
Merged-chr5-20812090-4	chr5	20811586	20812586	+	877.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172992, intron 3 of 17)	intron (NM_172992, intron 3 of 17)	70038.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.12193013723701	3.07221025880008	3.42550785070563	3.15429686625281	3.14222629663366	3.3382888281563	0.00918332681338209	0.988685244291671	0.997426973334006
Merged-chr18-30530306-4	chr18	30529799	30530799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	257434.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	2.49782416476523	2.74812304019383	2.64201131983565	2.77034546240562	2.58331618099775	2.77810252771978	0.411802591703757	0.591193512059254	1
Merged-chr4-148075541-4	chr4	148075032	148076032	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12532.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.17738972007863	4.0996579006091	4.46372078973585	4.33098504536664	4.39456449340269	4.5295763935383	0.455530453922459	0.321956273572295	0.715374322030644
Merged-chr8-71470598-2	chr8	71470098	71471098	+	986.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	1404.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	2.96012152924766	2.77352141996032	3.22685044166104	3.10322675962683	3.00073667829944	3.45284898815563	0.872948399590589	0.223623605972414	0.618387271709959
Merged-chr12-102379936-2	chr12	102379436	102380436	+	829.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59877.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.35158246355128	5.70857555457176	5.99184680110321	5.66695666193009	5.67420321114903	5.72729027176311	-0.0200934616022209	0.953752858396897	0.989446911725587
Merged-chr7-97174365-4	chr7	97173862	97174862	+	826.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	L1MA4A|LINE|L1	92611.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.76952976175058	3.53024952367431	3.47352125311389	3.58351989991984	3.47755955477954	3.90397990572773	0.196868352721125	0.737377550824977	0.933692850573981
Merged-chr11-68472668-4	chr11	68472185	68473185	+	885.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-30334.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.00855719797121	3.82528271689308	3.78655587979119	3.83069449249328	3.6529043905305	3.80480692095772	-0.387794020923506	0.462569546460653	0.815299769575674
Merged-chr5-124621626-4	chr5	124621125	124622125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026486, intron 13 of 18)	L1MB5|LINE|L1	-7427.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	4.37484419279981	4.14954252951497	3.89381507493071	4.30735850505266	3.88331992942721	4.59346381994231	0.345589242216331	0.525981861717281	0.849272421520383
Merged-chr1-138517166-3	chr1	138516677	138517677	+	821.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 5 of 9)	ID_B1|SINE|B4	102580.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	4.32323099130136	4.50669713645689	4.62620536525696	4.34137210216375	3.97169614023389	4.32709907257197	-0.716351404688713	0.130060868992828	0.482195010397444
Merged-chr10-121586836-4	chr10	121586330	121587330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-36.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	9.2157056749786	9.09333978314832	8.55510772352217	9.12113474400249	9.08143996605219	8.66341951475823	-0.0219207512495678	0.933807800746704	0.985607953495783
Merged-chr17-5849662-4	chr17	5849115	5850115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	8235.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	7.04012728492267	7.31864124695716	6.87485801348369	6.93168750185502	6.91897060989019	6.71202260251594	-0.360372715645501	0.174639943583014	0.553958540166797
Merged-chr8-45330475-4	chr8	45329995	45330995	+	826.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2701.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	3.59316913104589	3.53175192726172	3.75263304905234	4.00213894568858	3.61876160598224	3.71919498490656	0.555476753335641	0.319722890591688	0.713651544620236
Merged-chr2-164913664-4	chr2	164913167	164914167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1917.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	6.48690621911578	6.58809984124772	6.67994331833549	6.56441994032608	6.83810094957184	6.53746919357692	0.128414277236588	0.633294749157924	0.896008987803129
Merged-chr11-98753665-2	chr11	98753165	98754165	+	659.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	11880.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	4.99071282991368	4.91884166624818	4.96791136544389	5.10875252417528	4.95378971332563	5.20043576096614	0.265704709583492	0.47378116195917	0.82112857580293
Merged-chr2-167504767-2	chr2	167504267	167505267	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1324.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	7.34632767964383	7.43671708892845	7.29655798163231	7.68662675249539	8.07768531220329	7.30632664394717	0.54973052214052	0.0477521776858384	0.276831547473228
Merged-chr4-123914794-4	chr4	123914304	123915304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	5.32866829360785	5.45774651274778	5.50690402684172	5.13284068774927	5.44105216684451	5.39657092726312	-0.188446166465624	0.586894833507616	0.875701838845342
Merged-chr16-11418471-4	chr16	11417964	11418964	+	961.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 9 of 20)	intron (NM_028964, intron 9 of 20)	12816.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.2781329983061	3.21797284154982	3.51670429641749	3.04457617640974	2.88512364137481	3.58592901973527	-0.54451852252178	0.448168016052544	0.807085901041859
Merged-chr10-80017028-3	chr10	80016536	80017536	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347074, exon 1 of 23)	exon (NM_001347074, exon 1 of 23)	121.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	6.00160745562431	6.28470597858992	6.1605364011806	6.27803465886193	6.32610967453193	5.81048228639671	0.028896241161744	0.926761141981417	0.983571096425981
Merged-chr4-74310225-3	chr4	74309713	74310713	+	766.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	58334.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	3.60974214186077	3.81085689884208	3.96893124161672	3.8272774205265	3.80477604186359	4.16893367800335	0.429731362791034	0.426947059220039	0.793904265858508
Merged-chr6-53590626-2	chr6	53590126	53591126	+	791.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	17252.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.05041488078921	6.27666822438538	5.99045470687393	6.35237845239758	6.71049768560098	6.23435683395107	0.566733761706818	0.0630232707467793	0.326665595491863
Merged-chr8-121642825-2	chr8	121642325	121643325	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	9108.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	5.44057214523257	5.34045001135417	5.05494446379689	4.92429308427221	4.44388189189565	4.39803263479051	-1.49103379127118	0.00056138301325076	0.0115024766723884
Merged-chr16-23104096-4	chr16	23103604	23104604	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3364.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	4.55079518856996	4.48675373818059	5.23294277024962	5.01617587548389	5.2517516414526	5.29577715528362	0.869645565976805	0.0492550312656111	0.28212311030067
Merged-chr10-88574177-5	chr10	88573677	88574677	+	987.4466550000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	30975.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	5.5389522702519	5.47672836529698	5.32346383384905	6.59567657873348	6.54301917850146	5.90593716176238	1.63921493088848	1.74107628601178e-06	8.79608230761797e-05
Merged-chr16-91840364-4	chr16	91839905	91840905	+	863.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	91225.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	8.50770855092562	8.19709539389395	8.1411721565835	8.30691863748384	8.67978575108619	7.99142307445287	0.0994776284707708	0.709668110911899	0.92401439884764
Merged-chr7-7282318-2	chr7	7281789	7282789	+	858.75	f0_balb.idr|f1_balb.idr	TTS (NM_001302386)	TTS (NM_001302386)	-4000.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	5.78016422757946	6.15101218842683	5.96734193220275	6.15596079391542	6.33648903804769	5.9564390013163	0.328627991011081	0.291376602273257	0.689051679650718
Merged-chr5-124540680-4	chr5	124540168	124541168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-123.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	7.24904136102237	6.91197162858483	6.99095827946889	7.09046842807763	6.61762220489401	7.02230526451046	-0.215469111715169	0.438832065806416	0.80080572256114
Merged-chr2-158162440-2	chr2	158161940	158162940	+	700.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16048.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.5979441117191	4.54478221302513	4.7513620270287	4.67879306409633	4.70951359223864	5.05633121909282	0.437963733563244	0.291419306540097	0.689051679650718
Merged-chr7-55911571-4	chr7	55911060	55912060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	50933.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.98018511872632	8.09215393915238	8.11207619796681	8.09449303650492	8.3827774225993	8.06992934612903	0.190491920701292	0.390758797018642	0.769924051020271
Merged-chr5-21768690-4	chr5	21768210	21769210	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009584, exon 8 of 17)	exon (NM_009584, exon 8 of 17)	16455.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	6.00446155307617	5.90778942880821	5.90041767518377	6.45821293677017	6.37896410857851	6.10541299498443	0.661446969041094	0.0232596248226603	0.178524754380953
Merged-chr2-16491545-4	chr2	16491025	16492025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	135221.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.71526817783328	4.83115799453838	4.63570657467658	4.40474786954693	4.47005088335264	4.92230983002911	-0.300752161760489	0.491031308755967	0.830342687115936
Merged-chr11-75487767-2	chr11	75487267	75488267	+	978.6666869999999	f1_balb.idr|f1_c57bl6.idr	exon (NM_138659, exon 2 of 42)	exon (NM_138659, exon 2 of 42)	990.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	6.71882703336521	6.84046295872223	6.20991430757174	6.64514629339704	6.92625294779197	6.31563438494425	0.0569026910043114	0.860659456269895	0.967588655430938
Merged-chr3-142529798-2	chr3	142529298	142530298	+	612.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-538.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	4.42181249698028	4.27376189584769	4.74508607846392	4.48110628768853	4.46458442689079	4.50371332526914	-0.00112145231628015	0.997997812614768	0.999579683478894
Merged-chr19-29488602-4	chr19	29488117	29489117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33370.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	8.65969585062168	8.7794498249043	8.28992544648329	8.36413432383824	8.83405439017303	8.17686217644359	-0.138428106416388	0.608856144353514	0.885053989692691
Merged-chr10-98898198-4	chr10	98897678	98898678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16464.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.74974296809587	8.07385924368983	7.64405498718536	7.48962107453444	7.90218727505601	7.51281380175081	-0.264868587692253	0.309358664451464	0.704972356009282
Merged-chr5-125391778-4	chr5	125391265	125392265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1748.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.7810396067671	9.32698436850704	8.57965222008958	8.86745488203517	9.38480450312437	8.74190156230563	0.126284584059594	0.665459595436596	0.907852501192998
Merged-chr13-47224813-3	chr13	47224330	47225330	+	802.288879	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30827.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.89106879719642	7.26393510385302	7.37302975154763	6.60912926555015	6.63951069620883	6.92741370943247	-0.708416475371538	0.0102974694439035	0.102500439493126
Merged-chr1-171327495-1	chr1	171326995	171327995	+	546.0	f1_c57bl6.idr	Intergenic	Intergenic	-1313.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	4.35911564087015	4.06523597429769	4.30864382748487	5.67096524210275	5.79143463270539	5.51713066919793	3.24928129010295	2.97551093693211e-14	7.43502444565307e-12
Merged-chr5-140106645-2	chr5	140106145	140107145	+	568.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	RMER4B|LTR|ERVK	68273.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	5.28814875260061	5.68052347708654	5.55252926333676	5.30831056225549	5.23239027390869	5.41562244017545	-0.396068235316361	0.256795901657997	0.653899482362475
Merged-chr19-17337224-4	chr19	17336724	17337724	+	794.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	2281.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.2602639967436	4.29647165529516	4.39925410396463	4.58805025449549	4.80156771387984	5.05592795390827	1.23799538820014	0.00455569762792067	0.0573459282715489
Merged-chr18-80225060-3	chr18	80224587	80225587	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	18220.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	6.69983513009602	6.97754361674302	6.64144355019324	5.32411816308786	5.17658042296457	5.7492921102468	-2.38267585125774	2.34516608662744e-13	5.02929329216742e-11
Merged-chr5-135575667-3	chr5	135575164	135576164	+	966.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2615.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	2.5909642295548	2.42559567100584	2.54494657063717	2.15969727798772	2.32062460799428	2.4295300029725	-1.42015015593709	0.107766613222802	1
Merged-chr3-105849539-1	chr3	105849039	105850039	+	651.5	f0_balb.idr	Intergenic	Intergenic	-21319.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.26724162206896	3.23685371243084	3.23580736741149	3.22278742758063	3.2992062041783	3.19059730495482	-0.0213767871869548	0.972411102197885	0.993868590220018
Merged-chr1-134094474-4	chr1	134093958	134094958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-15303.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.38701833723631	8.19466666448619	8.19637696667845	8.16672619004101	8.64667983271687	8.28425961608441	0.174270425966197	0.462723611924102	0.815421548245998
Merged-chr8-111636479-3	chr8	111635980	111636980	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-6158.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	2.53840608655673	2.84234906461317	2.72961538141267	2.45222608399833	2.52165488984221	2.68035554542509	-0.901035986493021	0.256263271473409	1
Merged-chr8-126587973-4	chr8	126587447	126588447	+	877.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001164598)	TTS (NM_001164598)	5489.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.36828111937282	6.36577772665628	5.75117585231311	6.40968024296471	6.3197011352381	6.07650753406303	0.12305820262043	0.706761558621739	0.923133439601251
Merged-chr16-94527616-2	chr16	94527116	94528116	+	880.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-987.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	6.30484859938947	6.7070672039479	6.62595280792947	6.49527617367464	6.70674874987499	6.27791094739421	-0.0635846129315085	0.82921552992898	0.959990063227229
Merged-chr3-95627672-1	chr3	95627172	95628172	+	658.0	f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	intron (NM_001026212, intron 2 of 2)	2692.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.70094170128706	3.55287350932182	3.72974201666671	3.62590082411136	3.59741607465554	4.24351935213792	0.602978539174904	0.305763536082199	0.701883343337569
Merged-chr9-95512697-2	chr9	95512215	95513215	+	654.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-719.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	7.94757719363568	8.26271641226495	7.68905531686024	8.04465669335633	8.39743806244533	7.71703685080586	0.13759804357591	0.627057336644149	0.892997633492257
Merged-chr8-41299597-3	chr8	41299094	41300094	+	801.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 22 of 37)	intron (NM_023662, intron 22 of 37)	59835.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	3.71052137543595	3.47683108656277	3.6022366290568	3.88446735744592	3.94135212633556	4.16101231137358	1.28515813005325	0.0183336294558527	0.15277500957987
Merged-chr16-36933651-2	chr16	36933151	36934151	+	588.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030035)	TTS (NM_030035)	-1332.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	5.2660009677584	5.10200683763628	5.09873317038773	5.25798804494359	5.05952378147116	5.35434177637288	0.120655918014541	0.738822177949431	0.934103186309056
Merged-chr16-67160233-2	chr16	67159733	67160733	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	460675.0	NM_001347247	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	2.17136457416632	2.29767315915396	2.32007437623445	2.43939415200018	2.37438430999653	2.64648849613035	1.47236466021017	0.0866999446299427	1
Merged-chr10-59381819-3	chr10	59381316	59382316	+	971.822205	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-21869.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	4.64527405957106	4.36936214852071	4.71406470371317	3.93904487662185	3.22209057862538	3.69955590628612	-2.80169565061711	0.0367009419984548	0.235815597050767
Merged-chr4-141676670-4	chr4	141676119	141677119	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	9097.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	6.077129117464	5.84114324466529	5.6062567972488	6.09384761966903	5.9882800689108	5.86255409821669	0.211947660213788	0.505900417298107	0.838177729332582
Merged-chr7-125482558-3	chr7	125482108	125483108	+	752.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360659, intron 2 of 7)	MER21C|LTR|ERVL	8934.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	2.96084755527718	2.85098795622462	3.02241146130149	3.3294364816376	3.28085642434097	3.32831937870239	1.67463937360767	0.0120142472294447	0.114371359091104
Merged-chr10-39261734-1	chr10	39261234	39262234	+	888.0	f0_balb.idr	Intergenic	Intergenic	-97940.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	4.28181058346565	4.11908918697988	4.17057406798126	4.00404049935824	3.61057656764184	3.95326603960463	-1.00253666002047	0.0538928375525274	0.297763295290219
Merged-chr6-106443396-3	chr6	106442957	106443957	+	781.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	305580.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	3.23578261015576	3.2467170600361	3.47720520755414	3.38810650187116	3.6090104050958	3.49422456692653	0.714501563894973	0.234776748389045	0.630938811197406
Merged-chr19-5041386-4	chr19	5040926	5041926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134155)	promoter-TSS (NM_134155)	72.0	NM_134155	107392.0	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	7.07056499795631	6.98805026074531	7.37779269044707	6.99710282629061	7.10558897604274	7.09476470673636	-0.121728056540162	0.629760124645259	0.894377678440432
Merged-chr16-91404120-2	chr16	91403620	91404620	+	741.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_010509, exon 9 of 9)	exon (NM_010509, exon 9 of 9)	-2115.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	4.81803418624445	4.47111630124133	5.25968285253687	4.58585284794019	4.45750164712775	4.94543409123095	-0.495345911134985	0.298721426624973	0.695444616697123
Merged-chr15-86200446-2	chr15	86199946	86200946	+	787.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-14013.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	6.52622277495836	6.00608052389618	5.79528864874359	6.09771330239738	5.87261730502359	5.77597066962046	-0.400218583309354	0.248946976521566	0.645891304368634
Merged-chr13-46929131-2	chr13	46928631	46929631	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	587.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.45567001305153	4.66195107741817	5.02502169161353	4.9902409601021	4.77681775848883	5.38154498494687	0.746866825981197	0.0920986768434688	0.404248916114963
Merged-chr1-171559012-4	chr1	171558495	171559495	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018729)	promoter-TSS (NM_018729)	-198.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	6.05478210945508	5.98447855765554	6.18533381453289	5.18660954948828	4.9737912819043	5.24045793578642	-1.79380607263202	6.84644601054434e-08	5.07735365102829e-06
Merged-chr1-172321573-3	chr1	172321072	172322072	+	997.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008429, exon 4 of 4)	3' UTR (NM_008429, exon 4 of 4)	7750.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	4.28022300650692	4.24791228231873	4.52516884455389	3.85699195928946	3.84826021241504	4.0876626459561	-1.21968739151997	0.0134665508068375	0.1235003548474
Merged-chr6-24956164-6	chr6	24955689	24956689	+	886.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177013)	promoter-TSS (NM_177013)	-64.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	5.09885945975076	4.97745784266695	5.36965512731265	5.06558429980244	4.74876999627219	4.88137532413007	-0.529760828719283	0.176279027917465	0.556484761930209
Merged-chr18-38944621-3	chr18	38944144	38945144	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25945.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.29640842477165	3.18301907644585	3.39238834463274	3.07947155077247	2.93000253269148	3.13032930616682	-1.08395940043718	0.0988978616637324	0.419360626745723
Merged-chr14-27230219-4	chr14	27229691	27230691	+	793.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 3 of 12)	MLT1N2|LTR|ERVL-MaLR	-7819.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.93972359145787	5.70149234428909	5.27920273221247	5.11632919900139	5.33293973811819	5.0133893211116	-0.979922784550452	0.0104573234820453	0.103664948751996
Merged-chr4-145036445-2	chr4	145035945	145036945	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	143308.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	3.73076615876396	3.38424311561284	3.39752857307534	3.37688535615248	3.38182550683668	3.41235990959928	-0.484630548428881	0.421118081124036	0.790131900416752
Merged-chr18-38418166-4	chr18	38417665	38418665	+	824.858337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-742.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.96845059348039	5.10401534954703	4.78232658631046	5.33296912619336	5.19937668873332	5.28145204258552	0.624158409353199	0.0923565798380571	0.404825701689146
Merged-chr10-63164786-3	chr10	63164279	63165279	+	910.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_182992, intron 4 of 19)	intron (NM_182992, intron 4 of 19)	39173.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	4.80479520136922	5.06552096688081	5.3666455744745	4.4271954639254	4.46575256694594	4.84388488417491	-1.15537303370187	0.00806771390912358	0.0865685687740829
Merged-chr11-101589537-3	chr11	101589009	101590009	+	864.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359325, intron 6 of 7)	intron (NM_001359325, intron 6 of 7)	7210.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	3.76520873722138	3.64628985314648	3.81625106972998	3.89669980611458	3.42012890688055	3.78573081681867	-0.10084296800673	0.859655929702471	0.967422477970803
Merged-chr9-59485873-4	chr9	59485363	59486363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019927, intron 1 of 13)	CpG	511.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	8.556469272231	8.75245339286816	8.52015615032864	8.45380070417128	8.64408221354753	8.65661087540638	-0.03974646349758	0.849911736734564	0.964746847431705
Merged-chr4-59821713-4	chr4	59821210	59822210	+	909.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	L1MA9|LINE|L1	16060.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.69735263095508	4.56761669820289	4.73179495633616	4.75342807291821	4.77428072220128	4.26622008158566	-0.0777617440037966	0.860957336515684	0.967722186967053
Merged-chr2-91270609-2	chr2	91270109	91271109	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023854, intron 10 of 15)	intron (NM_023854, intron 10 of 15)	5494.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	2.75808877532017	2.61455866268292	2.92748394882444	2.88374084604032	2.93255575643681	3.05714332460309	0.957582679380752	0.186918129216592	0.571769078346716
Merged-chr5-5336719-1	chr5	5336219	5337219	+	631.0	f0_c57.idr	intron (NM_011074, intron 2 of 14)	L1MB8|LINE|L1	43532.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.44285315077149	3.49298952770604	3.4320592680606	3.58105466289096	3.78409787867551	3.66818281844649	0.805624447816351	0.153716295582298	0.522762313434906
Merged-chr15-25406182-4	chr15	25405664	25406664	+	877.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	7600.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.30444691486601	4.31176032049539	4.19080480114986	4.11830628710589	4.22124011525384	4.34855436338132	-0.125177669842591	0.785261617273084	0.947850129107983
Merged-chr19-41323979-4	chr19	41323467	41324467	+	940.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 7 of 16)	MIR|SINE|MIR	-59963.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	5.65317356942875	5.52242182160538	5.71126364686999	5.68527997467323	5.58415547064909	6.20686372611523	0.388855730698662	0.265694550467013	0.663462942058076
Merged-chr1-138972645-4	chr1	138972105	138973105	+	948.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4884.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	6.00831179457849	6.25070572812693	6.3606553369476	6.52699927005079	6.49373242593829	6.62737763332512	0.55627107711331	0.0464603336737864	0.272755998081786
Merged-chr11-70890871-2	chr11	70890371	70891371	+	757.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291142, intron 4 of 16)	RLTR30D2_MM|LTR|ERV1	46110.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	3.91240213421316	3.651565295701	3.84933548378628	3.60532381987666	3.61720163835624	3.96498393428043	-0.251063332830298	0.649609368988749	0.902251703507615
Merged-chr11-83040522-2	chr11	83040022	83041022	+	669.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073523)	promoter-TSS (NR_073523)	10.0	NM_001355513	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	4.23005861546955	4.10614316225499	4.28446128243643	4.13865918396618	3.92990643170833	4.07924280435069	-0.451277221876554	0.346833373873284	0.735006911502857
Merged-chr19-41368392-2	chr19	41367892	41368892	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	B3A|SINE|B2	16678.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.30492010528668	5.34263394623071	5.41834126150653	5.65405145816285	5.54172390469213	5.62288480486698	0.483543867301556	0.137912657061836	0.496333880789271
Merged-chr1-36508414-4	chr1	36507925	36508925	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_033570, exon 7 of 7)	3' UTR (NM_033570, exon 7 of 7)	-3442.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	2.937144553933	3.08646533925754	2.75735695095934	2.81109153470747	2.75002317112077	2.9563524521288	-0.501580294442178	0.489563836761994	0.829747590465569
Merged-chr2-164815543-4	chr2	164815048	164816048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	-7138.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	3.36959282016141	3.55475790849577	3.12818262121378	3.43741829879202	3.38576554192366	3.65703072127329	0.462577141249594	0.46761621680732	0.818060470704192
Merged-chr17-56251197-4	chr17	56250625	56251625	+	910.8511960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-5668.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	3.34128377602555	3.03301442257351	3.16947337058456	3.25547203684435	3.35254895139725	3.2420788330637	0.40358014888821	0.528414730457799	0.85053360857083
Merged-chr8-117294631-2	chr8	117294101	117295101	+	823.916687	f0_balb.idr|f0_c57.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37582.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.68963085214695	4.63001016576856	4.97851656015887	4.34900721312875	4.77624112486797	5.07361512553796	-0.0165455895877398	0.970943769954588	0.993608279552101
Merged-chr11-120070680-1	chr11	120070180	120071180	+	550.0	f1_balb.idr	intron (NM_009734, intron 14 of 25)	intron (NM_009734, intron 14 of 25)	16147.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	4.08565551141292	3.85365466413913	4.08540415573225	4.1233130104228	3.78868868573341	3.859102143842	-0.237278403853035	0.646652947713373	0.901026195271032
Merged-chr17-47630349-2	chr17	47629849	47630849	+	802.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198421)	promoter-TSS (NM_198421)	-341.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	4.57200770183936	4.40823513384957	4.32093274083756	4.51307477321791	4.28290404595632	4.56128356918368	0.0154977600911631	0.972231475254386	0.993868590220018
Merged-chr13-20114461-3	chr13	20113941	20114941	+	861.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	23934.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.06820331875196	3.09290552809397	3.05184796681707	2.96045892843042	2.84803067288426	3.06538103065412	-0.548142584857458	0.415626716897727	0.78656116488557
Merged-chr9-66060122-4	chr9	66059605	66060605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-64.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	6.71442384038432	6.81604930820128	6.77469578232563	6.7616382307822	6.86888471268057	6.51385463900422	-0.0540709862936385	0.836414644104241	0.962001762335242
Merged-chr15-86171361-2	chr15	86170861	86171861	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	B4A|SINE|B4	-14367.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	7.05581525346053	6.73343653079508	7.00041170676639	6.78463038684906	6.68773278078032	6.7274248431727	-0.31341620380305	0.225032006005257	0.619934301718101
Merged-chr6-114916068-1	chr6	114915568	114916568	+	596.0	f0_balb.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5753.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.79507496725388	4.86135398991163	4.86471535396727	5.06851066735609	4.98002621440153	4.89278646132773	0.321589205603053	0.394719955821241	0.772514857254462
Merged-chr5-147506964-2	chr5	147506464	147507464	+	616.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359433, intron 6 of 19)	intron (NM_001359433, intron 6 of 19)	76808.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	2.23146853196664	2.2399686914201	2.29606677270178	2.54883721513459	2.2037916032668	2.56523100862454	1.24721251927447	0.152283238487046	1
Merged-chr9-110857058-4	chr9	110856548	110857548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	-919.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	4.49309692798471	4.56283296512394	4.22638190886803	4.32512066546442	4.32522319367564	4.2957008264815	-0.334345401028871	0.458227622713913	0.812946292086582
Merged-chr10-22003002-2	chr10	22002502	22003502	+	685.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8336.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	2.21216534537944	2.14458109962663	2.40771654966256	2.13330192920281	2.1368424821222	2.09184534027068	-0.962448219897922	0.285231809045471	1
Merged-chr4-47315641-4	chr4	47315116	47316116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37606.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.73718451789037	6.39639587225072	6.29046458799041	6.32433576431009	6.2106510973038	6.13610039800174	-0.441058591887922	0.131368620609027	0.4845480820797
Merged-chr9-96395331-4	chr9	96394804	96395804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30873.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.30791930945327	7.15345381703642	7.3258484830474	7.17270247396483	7.33884046201663	7.5916760295134	0.165809339399839	0.503551158711154	0.837070472600639
Merged-chr3-87365347-4	chr3	87364845	87365845	+	751.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	7464.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.69632234728473	4.76407856397291	4.7410854552148	5.36361299822126	5.53252279416351	5.66608224053235	1.64348468534282	8.4441726830561e-06	0.000345949148504053
Merged-chr5-112950988-4	chr5	112950496	112951496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-54634.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	6.22025809512464	6.59549550084811	6.23646803894575	6.38289794422773	6.13123752348279	6.33685972320035	-0.144288313739845	0.62519831676868	0.89246806537449
Merged-chr2-32289722-2	chr2	32289222	32290222	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080968, intron 1 of 25)	B3|SINE|B2	1469.0	NM_001080968	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	3.5497657817798	3.48907960301038	3.75437550729958	3.86850962379543	3.55514860108579	3.6164082966288	0.312412316364974	0.581269520628839	0.873263270263929
Merged-chr5-125475301-2	chr5	125474801	125475801	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-572.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	2.54882368426293	2.60594749370689	2.92940801811564	2.47684150600683	2.43487766023217	2.59003322671666	-1.16428408089448	0.148421297439951	1
Merged-chr5-92352428-2	chr5	92351928	92352928	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	RLTR13D2|LTR|ERVK	-3539.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	3.93999530084763	3.79423371495421	4.03594338160207	4.32853673035413	4.05267268801674	4.00733081060637	0.641491650700077	0.201835321205014	0.59145972305094
Merged-chr3-38116222-4	chr3	38115731	38116731	+	923.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91888.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.45096814469283	4.63312735656463	4.78698466680304	5.0411544855595	4.59555369569079	4.81506638003173	0.478517311925202	0.263433822084594	0.661383847170923
Merged-chr1-120055644-4	chr1	120055162	120056162	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012322, intron 11 of 13)	intron (NM_001012322, intron 11 of 13)	18118.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	4.77593446953893	4.40929689486836	4.4080292289719	4.98502816806039	4.62953049759732	4.69433306992515	0.538171649622723	0.221707387765315	0.616551195520748
Merged-chr3-142528604-2	chr3	142528104	142529104	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1732.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	3.24684770739893	3.31368123345373	3.48871309463981	3.47640420265304	3.50953624899641	3.5057552509098	0.574113254789896	0.329794274097813	0.721504110160967
Merged-chr7-80038714-2	chr7	80038214	80039214	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	12486.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.91875868711924	4.75252786218919	4.99403686811259	5.10960474042573	5.03258186885519	4.87630134250422	0.281865881431379	0.460380068657432	0.814477170345238
Merged-chr6-124769515-4	chr6	124769011	124770011	+	872.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302555)	TTS (NM_001302555)	162.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	2.8137103771556	2.55611813653215	2.78129377269329	2.82592972032272	2.70316004995646	2.46003948438924	-0.250408891116287	0.756741403794355	1
Merged-chr1-138620215-4	chr1	138619724	138620724	+	921.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	-467.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.58152011834253	6.7348211870395	6.5780754507056	6.31301378651384	6.21162634034722	6.46330118770788	-0.506163509140544	0.0601996817647674	0.317728010996667
Merged-chr13-60710807-1	chr13	60710307	60711307	+	568.333313	f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	75557.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.44403363799732	3.37864463602209	3.64936129963916	3.13270139177696	3.03360703832317	3.57156999379617	-0.91253030838736	0.168893894797371	0.545531802905646
Merged-chr18-80195461-10	chr18	80194944	80195944	+	722.549988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199197, intron 3 of 5)	intron (NM_199197, intron 3 of 5)	5175.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	6.39385718773989	6.44650322187627	6.65153903385886	6.37066617131372	6.37787637006432	6.56511579967413	-0.096830881933523	0.72193194182908	0.928606209603791
Merged-chr7-80075969-2	chr7	80075469	80076469	+	692.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	-712.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.47424091779271	5.35809546945733	5.63855730136075	5.08446821403325	5.21783132236638	5.51672686161592	-0.417606367489078	0.24197540601708	0.639062070204697
Merged-chr18-58576171-5	chr18	58575676	58576676	+	897.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 2 of 9)	intron (NM_001081072, intron 2 of 9)	19936.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.71560943959256	4.72016200792284	4.73087835722946	4.41233562001954	4.32214462553801	4.18675898359418	-1.01458463692873	0.0190716941450331	0.156547057948102
Merged-chr17-69201143-4	chr17	69200645	69201645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	41789.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	8.09941278068548	8.13349901898397	7.9407950858493	7.93942984552226	8.40002861331284	7.96567500884065	0.0906827588794203	0.708368124595548	0.923684652799343
Merged-chr8-119352994-2	chr8	119352494	119353494	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8456.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.87030586966283	3.9683701169824	3.88224504901767	3.97258575761196	3.73537909405709	3.85020236311016	-0.176709737911349	0.731094023464366	0.931307266655708
Merged-chr9-45275509-4	chr9	45274955	45275955	+	868.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B2|LTR|ERVK	-6306.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	6.67783928151377	6.55045436499815	6.39339440853462	6.39655347556812	6.30955979267784	6.1399874273473	-0.423301241453629	0.127411275352589	0.477142868695183
Merged-chr7-24364992-4	chr7	24364493	24365493	+	908.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5270.0	NM_001163510	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	2.41686943115562	2.31184981355797	2.6084564373141	2.21829404918826	2.23954391098885	2.30700225451276	-1.29827635958176	0.133917891119931	1
Merged-chr2-32449004-2	chr2	32448504	32449504	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	B1_Mur2|SINE|Alu	-1453.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	5.05021597653132	4.91501018720887	5.3138400649405	5.32873551597358	5.21969391935983	5.22233198662556	0.344326587288413	0.347085249635477	0.735209070313411
Merged-chr1-195015138-1	chr1	195014638	195015638	+	679.0	f0_balb.idr	Intergenic	Intergenic	-2261.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	4.56625433995402	4.50317366475366	4.70920947396021	4.12180819980832	4.12972270211058	4.19484940442513	-1.17289271389728	0.00924073171642348	0.095290966000764
Merged-chr4-147587317-2	chr4	147586817	147587817	+	809.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34040.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	2.50382157296441	2.61669763163155	2.65478474181597	2.32598199001568	2.53404317565393	2.60530525979192	-0.581716245071635	0.472451593149704	1
Merged-chr12-85472254-4	chr12	85471752	85472752	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1638.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.30581984918989	8.29299186528863	7.7177698769182	7.92870318724394	8.14016899151686	7.68878241788934	-0.285862978218484	0.289037059821438	0.686559967845339
Merged-chr12-102393823-2	chr12	102393323	102394323	+	569.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011175)	TTS (NM_011175)	45990.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.11366389269943	4.05798160623141	4.24035610543985	4.29878239477384	3.98402816398681	4.43315524343256	0.296542864370731	0.543600722926889	0.857551302506722
Merged-chr12-112631012-3	chr12	112630519	112631519	+	952.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	MTD|LTR|ERVL-MaLR	10972.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	6.65350724119801	6.44986933622287	6.80800341982249	6.59969418058037	6.6508455861563	6.25459315828072	-0.181751655305508	0.525045467844217	0.848874487604023
Merged-chr9-110646134-2	chr9	110645634	110646634	+	873.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8027.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	3.35495891180583	3.41101398329246	3.73352766100309	3.52285207336594	3.51411288437861	3.38307445119614	-0.0867164715862053	0.884457031827679	0.973510728214101
Merged-chr8-120565446-2	chr8	120564946	120565946	+	746.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	23629.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	5.68065550388036	5.42975915751742	5.76121538932528	5.34060122083279	5.10916305339281	5.29886688782504	-0.734867449824547	0.0342113672674938	0.226320515788967
Merged-chr15-83035700-2	chr15	83035200	83036200	+	598.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2303.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	5.25529009406663	5.37522976938703	5.44317097695604	5.51270410989825	5.67734762912853	5.56328110487638	0.451873358299321	0.171026737888049	0.548963962743078
Merged-chr17-44078839-4	chr17	44078341	44079341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329619)	promoter-TSS (NM_001329619)	39.0	NM_001329619	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	3.74569783367167	3.49038422134364	3.8233991631351	5.37736936579952	5.04580168274286	4.39833867704353	3.79706041361069	1.81724854189413e-10	2.2910547980898e-08
Merged-chr9-106370087-3	chr9	106369529	106370529	+	856.711121	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 1 of 2)	intron (NM_153459, intron 1 of 2)	1397.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.30929190763835	5.6217145995525	5.49278342345843	5.81443458603961	5.86917142793783	5.6421816078683	0.56205679770817	0.0866192968359396	0.389875727323211
Merged-chr15-59717229-4	chr15	59716724	59717724	+	934.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68570.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.72034795083799	4.32590265224295	4.35913544382286	4.28950293912861	4.20272393396119	4.29075438942934	-0.595033509620635	0.197029034599171	0.584870414852249
Merged-chr15-82998403-2	chr15	82997903	82998903	+	655.875	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001271411, exon 6 of 6)	3' UTR (NM_001271411, exon 6 of 6)	24735.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	2.7387880419385	3.1889116433874	3.44517004145766	2.98010987543534	3.01414668902347	3.25705391469041	-0.284150432973933	0.705296182492399	0.922756484933722
Merged-chr2-174109892-3	chr2	174109404	174110404	+	973.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_213733)	promoter-TSS (NM_213733)	-447.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	5.83188738997586	6.05598785589552	6.28735927379766	6.56773537442072	6.49260387440178	6.26791706435307	0.655932509041171	0.0278765762842791	0.199393567353258
Merged-chr17-65931174-4	chr17	65930679	65931679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	20008.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	2.98066980310554	2.80761733579236	2.86542916993018	2.98651777036901	2.75705194422198	3.22645622182072	0.518746288642695	0.472803786331589	0.820550293768681
Merged-chr17-86770024-4	chr17	86769448	86770448	+	893.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	16084.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.3585818427391	4.52586857490088	4.1530462618579	3.3684696300122	3.80062326915442	3.76134448382333	-2.15143078018957	0.000313616514106432	0.00722464089306978
Merged-chr13-101698774-2	chr13	101698274	101699274	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-6144.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.26479911239767	3.24774721544851	3.55665382397208	3.41903758086887	3.57200075802917	3.99903175667589	1.16377970874718	0.0623699162529769	0.324537301705816
Merged-chr11-58905020-2	chr11	58904520	58905520	+	786.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-795.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	4.69854150281469	4.49798719574912	4.42441981405601	4.46491975512408	4.64454991272758	4.88402093794767	0.281886992330923	0.516582807106765	0.844296391152365
Merged-chr11-117809716-4	chr11	117809210	117810210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009304)	promoter-TSS (NM_009304)	43.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	7.16048385352087	7.23927424416456	7.29431554703398	7.20994271469459	7.0910742713708	7.3514618067312	-0.022592556659221	0.92430300770775	0.982943160694065
Merged-chr18-70415606-3	chr18	70415110	70416110	+	914.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-56844.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	2.49317376640283	2.69216556824674	2.63898306986991	3.19884247304199	3.03686084117869	2.91322662152745	2.43579556660562	0.00257549190555839	0.0375298073774396
Merged-chr5-108668493-1	chr5	108667993	108668993	+	543.0	f1_c57bl6.idr	intron (NM_008325, intron 1 of 14)	intron (NM_008325, intron 1 of 14)	6303.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	6.40624657846242	7.26310621669278	6.93407269443478	6.71450963266427	7.02244772606678	6.6217826580023	-0.177829222837787	0.586278354688215	0.875450945538768
Merged-chr11-60930565-2	chr11	60930065	60931065	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	1302.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	2.42609640705391	2.42520326183817	2.67081560835448	2.53429840219506	2.38212385906621	2.49673072435633	-0.222300059491617	0.78180523802961	1
Merged-chr4-129335953-4	chr4	129335448	129336448	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-78.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	7.32510713094143	7.69449894469653	7.47071960245129	7.62573296940233	7.98886442925159	7.22026604475694	0.225845377734491	0.43408493651188	0.79814689082248
Merged-chr11-119913782-4	chr11	119913316	119914316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085498)	promoter-TSS (NM_001085498)	6.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	6.4386826136416	6.65360186056539	6.35163335981321	6.48283488844676	6.29988284479536	6.18236277358403	-0.265461241793911	0.347673774974477	0.735701120697733
Merged-chr19-32172524-1	chr19	32172024	32173024	+	659.0	f0_balb.idr	intron (NM_144792, intron 5 of 9)	ORR1C2|LTR|ERVL-MaLR	38489.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.95034617715212	2.7796867319376	3.01482505941756	3.03649612374232	2.70116604694643	2.90896826027969	-0.139984881216805	0.846025739239147	0.963949453265197
Merged-chr12-100028115-2	chr12	100027615	100028615	+	672.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164426, intron 2 of 2)	Lx5b|LINE|L1	63616.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.13321012350145	2.9400566236165	3.19591564666	3.02673349109418	2.85570817394874	2.78479684885418	-0.923288503615668	0.19237868049514	0.579434056564092
Merged-chr4-88721191-2	chr4	88720691	88721691	+	958.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	1317.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	6.3006061141074	7.04648371565841	6.04648000922379	6.42266935283192	6.64449164184887	6.59973925497303	0.0101557999162797	0.977318304287823	0.994771164142869
Merged-chr13-45088790-4	chr13	45088331	45089331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-86735.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.72518452322937	5.61407902937351	5.18190251301991	5.71356708048651	5.83337352972839	5.57672273335263	0.326168976322409	0.352386344429732	0.740064688220826
Merged-chr13-51908355-4	chr13	51907867	51908867	+	882.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61692.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.24323141823643	4.63034374147358	3.99472479812516	4.35020137508096	4.09556969208782	3.78006805591113	-0.604205331142361	0.276596490908053	0.674003097641857
Merged-chr15-98134734-2	chr15	98134234	98135234	+	862.416626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001170710)	TTS (NM_001170710)	10968.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	3.98141037462698	3.91060266061881	4.58262133642503	4.20090314426622	4.25566139485702	4.41963860623699	0.296424967756499	0.568376086702729	0.868549528189122
Merged-chr5-92312469-3	chr5	92311957	92312957	+	946.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2433.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	2.89075219735594	2.95462700646963	3.02579560317167	3.22006805217323	3.32257776603083	3.38337708870953	1.58771679822261	0.0165384413449067	0.14230195042805
Merged-chr3-32708534-4	chr3	32708038	32709038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019673)	promoter-TSS (NM_019673)	-8.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	5.62310110741751	5.74360617143426	5.7574951892249	5.83426344854347	5.83615924795908	5.81918146384291	0.223558420826157	0.462057566804896	0.815107818354545
Merged-chr6-99786076-1	chr6	99785576	99786576	+	545.0	f1_balb.idr	Intergenic	Intergenic	-59684.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	3.45225814906622	3.08111323865272	3.15148752385613	2.6881772050787	2.6724906630939	2.92349397888411	-2.52454126900429	0.0013761429025111	0.0231466673675995
Merged-chr3-40951519-2	chr3	40951019	40952019	+	731.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040399, intron 1 of 9)	intron (NM_001040399, intron 1 of 9)	888.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	3.86679817632447	3.67751916625998	3.85197504601893	3.91142046944116	4.01115652879553	3.71136584879919	0.297994088844413	0.573857578279117	0.870357285068878
Merged-chr7-138846218-4	chr7	138845721	138846721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	46.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	8.38935294526147	8.58057396583086	8.21391814205256	8.46511405293582	8.34995276888936	8.21637176183756	-0.0815826938696236	0.714618950789627	0.92601294778158
Merged-chr5-122704699-4	chr5	122704193	122705193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2851.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	6.1576357848052	5.94258066398687	5.61024051639917	6.26973664696671	6.07068516934753	5.84421756616079	0.247900611252905	0.454412254477596	0.810258970761208
Merged-chr7-45098997-3	chr7	45098504	45099504	+	981.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357117, intron 4 of 6)	B3|SINE|B2	4818.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	5.67169737995519	5.67123331501678	5.96666461892054	4.36688078174065	4.61684162227349	4.73816419072401	-2.52545341848999	3.39904346593929e-10	4.03463065212377e-08
Merged-chr11-85352736-4	chr11	85352248	85353248	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-416.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	5.31412670687104	5.17565614971203	5.68343590727134	5.59948647977774	5.62961443670931	5.41451623625395	0.312573844660507	0.37783337194235	0.760218641134828
Merged-chr10-26374239-4	chr10	26373807	26374807	+	964.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347467)	promoter-TSS (NM_001347467)	-235.0	NM_001359254	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	5.46682246885442	5.40957663775993	5.59384124126291	5.33985867714135	5.1406577716829	5.40478063783042	-0.385723722826876	0.259932100223837	0.657488646922558
Merged-chr5-148707548-4	chr5	148707033	148708033	+	805.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34307.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	1.91455265687607	2.01623371219041	2.09677077860079	2.31403787421241	2.07995218455391	2.30594238530348	1.75860964717611	0.0660395733416083	1
Merged-chr15-57973068-2	chr15	57972568	57973568	+	732.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-12835.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	2.32478400733005	2.34752098016681	2.43060841293153	2.21349096305214	2.12314163132868	2.24646716652668	-1.24560129793202	0.153538447558661	1
Merged-chr11-74840433-3	chr11	74840038	74841038	+	723.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	9614.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	3.70256517119526	3.58376169583282	3.67725908559832	3.81386355852824	3.60086225123608	4.08077535424989	0.597559788630567	0.283555706402232	0.681376161050487
Merged-chr8-122284205-3	chr8	122283702	122284702	+	849.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	2061.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.46464583150946	2.46338605611709	2.59344941570418	2.62058937232297	2.35757063433659	2.72801107864123	0.389764565478137	0.628390333477246	1
Merged-chr16-57123299-4	chr16	57122806	57123806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	1592.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	3.89368195893943	3.75323012960848	3.70272422747883	3.99136808685201	3.76712460153359	3.54548705295132	-0.00908342249782511	0.986941046390656	0.997139169567538
Merged-chr10-60346829-4	chr10	60346349	60347349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-2.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.46846314143609	6.38161261340534	6.31627970124979	6.46802969606123	6.4516103985224	6.0951335639083	-0.0538423270371383	0.849571870085087	0.964686793473289
Merged-chr2-148673413-3	chr2	148672908	148673908	+	753.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019761, intron 1 of 1)	intron (NM_019761, intron 1 of 1)	767.0	NM_001110159	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	3.79002869145681	3.8613517505601	4.08484166431934	4.37566770785807	4.31126100183039	4.15402100692849	1.09836355272286	0.0249667446813184	0.186874424221059
Merged-chr5-117873497-2	chr5	117872997	117873997	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 1 of 27)	B1_Mus1|SINE|Alu	6658.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	3.91591657404095	3.76707804405174	4.31487803745636	3.91167808317953	3.77764611169945	4.26013482650911	-0.0599935703417399	0.913235601644872	0.980560320145079
Merged-chr9-90209413-2	chr9	90208913	90209913	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 11 of 12)	intron (NM_194334, intron 11 of 12)	46435.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.81031466768511	3.79510890368032	4.15444163874992	4.14762120095297	3.6868458143013	4.38516342089817	0.507783293751042	0.365150198182418	0.750338480639737
Merged-chr15-12376334-4	chr15	12375845	12376845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54849.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	6.91302904479587	7.04704283623298	7.04273322632882	6.66099070249309	6.76606637968778	6.84071880216921	-0.379438185018504	0.124983483821518	0.473054299573367
Merged-chr19-32186997-3	chr19	32186498	32187498	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24015.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.91332672001907	6.03308289336717	5.6309558121203	4.98503890123559	5.03457455894883	5.16538455516434	-1.59293736079879	4.15126449149669e-06	0.000187846294906789
Merged-chr15-79443230-2	chr15	79442730	79443730	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1087.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	3.09490208765023	2.98621091549982	3.02073809573244	2.79043136343688	2.99511433295427	2.97385457362786	-0.519127365894089	0.451289264705237	0.808957790071745
Merged-chr5-86190931-4	chr5	86190423	86191423	+	781.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6978.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	3.68484103798444	3.69154928576577	3.80146408962832	4.34884226282057	4.82608110049883	4.65401290446126	2.64522354605872	3.57064212523945e-07	2.19590532118938e-05
Merged-chr17-55960295-2	chr17	55959795	55960795	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	-894.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	6.23009210064802	5.97647906365281	5.84328799527256	5.9054170473416	6.20248721400066	5.85358319593363	-0.0457901271804932	0.885212250724666	0.973549591486895
Merged-chr13-67061734-2	chr13	67061234	67062234	+	656.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	-564.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	4.90283923701914	5.17214081084236	5.20328781973375	5.35896699311052	5.18807283830729	5.35946900956346	0.417954955292069	0.249362566912994	0.646297222702376
Merged-chr8-104240451-2	chr8	104239951	104240951	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 4 of 8)	L2a|LINE|L2	8107.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	7.24281843212232	7.66800180296221	7.20108038490585	7.15472506670072	7.41776002045716	7.02191877915894	-0.264046230293812	0.333844173204525	0.724614206827878
Merged-chr5-54060251-3	chr5	54059754	54060754	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	61731.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	3.18570366683093	3.49057637879567	3.09192003526904	3.38364692061594	3.01853320169661	3.61220599963458	0.337289574762227	0.627969461539979	0.893474066598445
Merged-chr17-80565230-4	chr17	80564738	80565738	+	935.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-1404.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	5.51884192471945	5.63103792172856	5.35940457550928	5.2504825175691	5.47255385283568	5.32765333980167	-0.301144854854265	0.377912217064197	0.760222685045705
Merged-chr2-11495801-2	chr2	11495301	11496301	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6289.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	3.39069958997462	3.47464940164812	3.22057747430755	3.40051012580995	3.28470695678838	3.46537319205792	0.0329721918814671	0.95677938549584	0.989887454023164
Merged-chr7-90130232-4	chr7	90129726	90130726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	13.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	8.55547162298065	8.46391799474283	8.14680216674662	8.41989933413601	8.44134692228502	8.05699640826752	-0.114507361515866	0.633240791483037	0.895978434527964
Merged-chr5-64680216-4	chr5	64679731	64680731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69532.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	6.04651433094045	5.71026330872692	6.32240045570339	6.18428287588647	6.26332975795618	6.417741615683	0.42279751560828	0.182478814724123	0.565353435438242
Merged-chr15-57818919-2	chr15	57818419	57819419	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	73499.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	2.70875336012765	2.90627242017966	3.07313610304735	3.32002590905361	3.47132958363807	3.20688406924639	2.05374414137534	0.00459313025920517	0.0577231811822903
Merged-chr2-144165510-4	chr2	144165020	144166020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	23770.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	6.50933529077112	6.35977091565026	6.29503871330345	6.3285168399931	6.43413253717232	6.23113781997629	-0.089605626407018	0.744918369008413	0.936032341688524
Merged-chr15-77970955-4	chr15	77970409	77971409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018749)	promoter-TSS (NM_018749)	-85.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	8.11372321289682	8.22686118602254	7.85988709653141	8.10933631924595	8.30421107973534	7.99598745725971	0.09344230305763	0.687531142448998	0.917163788391121
Merged-chr9-16115400-2	chr9	16114900	16115900	+	695.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240844.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	4.11297469677476	3.82989153367583	4.09374586332138	4.17387013496992	3.97392044895425	4.06788701150853	0.167162238274303	0.737229980821061	0.933661566530072
Merged-chr5-117520180-2	chr5	117519680	117520680	+	965.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	106178.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	2.55523137004822	2.33600546467873	2.71278523787277	2.63098462148541	2.61186491128351	2.78579070004436	0.77404369572527	0.336898829623669	1
Merged-chr11-83595917-4	chr11	83595406	83596406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 1 of 8)	MLTR14|LTR|ERV1	-2819.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.67951480994468	6.15808852704553	6.28949815317983	6.17109134790139	6.07251678348907	6.16330387403741	-0.443905526639305	0.144431199573244	0.507201164636624
Merged-chr11-118197794-2	chr11	118197294	118198294	+	611.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	14948.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.91360658891335	4.30374615076212	4.36340840070207	3.92697248829497	3.91160745634861	3.98471631802296	-0.770754502446479	0.129672272795417	0.48172009397354
Merged-chr2-167860711-4	chr2	167860222	167861222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71605.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.9499565242491	4.88459491569369	4.90642342133131	4.65710309510621	4.26290515459999	4.45206877529336	-1.07611360605014	0.0109328794749537	0.106986126702569
Merged-chr10-8872650-2	chr10	8872150	8873150	+	611.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	B1_Mus2|SINE|Alu	13420.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.16152717093759	5.93944536296825	6.00032678788548	5.75967720045931	5.85670861621852	5.87212128488908	-0.366831920796786	0.219527394644806	0.613735463896719
Merged-chr13-54578332-4	chr13	54577828	54578828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 2 of 3)	intron (NM_019968, intron 2 of 3)	3315.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	5.92885712377237	6.26827282684456	6.36453172132842	5.97735602350166	6.26294884164473	6.23368472685085	-0.0484255600836486	0.874353185651189	0.970754540400126
Merged-chr16-13160468-4	chr16	13159978	13160978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50742.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	4.26226054490207	3.83133863660263	4.15132352274625	3.83678521898323	3.57853307678317	3.94077288209332	-0.948983323824153	0.0812667720736841	0.377154899019943
Merged-chr15-76659822-4	chr15	76659332	76660332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-26.0	NM_001358910	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	7.07879845098159	7.22211606095904	7.06742573490925	7.15525136733661	7.30665965358694	6.66813406137937	-0.0628707020235738	0.821235651399975	0.957942312428027
Merged-chr1-69687208-4	chr1	69686689	69687689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1229.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	5.28005804021067	5.05598812753757	4.9174090769883	4.97367234570752	4.52679483771943	4.87001149342262	-0.665309445492969	0.104305579830235	0.430850808504477
Merged-chr9-60999260-4	chr9	60998778	60999778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-17791.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.54525272528226	4.31144262068173	4.10437852178077	4.6010837989581	4.35343829665882	4.12363093368258	0.0990249468762562	0.839367369276866	0.962784121274377
Merged-chr16-36828371-4	chr16	36827865	36828865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113401)	promoter-TSS (NM_001113401)	-35.0	NM_177128	320299.0	Mm.222934	NM_177128	ENSMUSG00000022837	Iqcb1	6820449I09Rik|AV128382|NPHP5	IQ calmodulin-binding motif containing 1	protein-coding	5.46392217154146	5.37870659363502	5.04952008465542	5.18357978035518	5.2151426327241	4.7030154504064	-0.50827729355106	0.206430063484358	0.597067005556624
Merged-chr2-127524583-4	chr2	127524057	127525057	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2463.0	NR_110989	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	3.47273176012777	3.1609145115495	3.37094003646602	3.91501185252656	3.68962161554773	3.82371172195659	1.70302792216212	0.00471556339244237	0.05880884273956
Merged-chr17-5303366-7	chr17	5302893	5303893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	115374.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.14968039257166	5.19125253653292	4.84830161503321	5.12386192508635	5.20026200689698	4.56111194433102	-0.154283298341772	0.717752412255639	0.927170222606377
Merged-chr1-87657070-1	chr1	87656570	87657570	+	541.0	f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	36758.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	4.63759271071226	4.48445379535371	5.30012992472087	4.72190277760174	4.6184134298086	5.0418324290203	-0.105918708781523	0.822638678698308	0.958134952997982
Merged-chr7-80641591-4	chr7	80640937	80641937	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	5420.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	6.99498798621117	6.99873079196382	6.73602130406314	6.99647814425883	7.20254345854073	7.11003387202421	0.280388165440959	0.263004690740242	0.661016194688385
Merged-chr16-4558086-4	chr16	4557579	4558579	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	1641.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	5.47814847611475	5.69867902616694	5.48709333155793	5.41921937423811	5.75985608477881	5.49077364378251	0.0228436151091542	0.94626918669322	0.98796006280508
Merged-chr17-53479836-1	chr17	53479336	53480336	+	1000.0	f0_balb.idr	intron (NM_025887, intron 1 of 5)	CpG	602.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	8.48691364319476	8.8403585786889	8.40141548589678	8.53441228507032	8.51424761747473	8.51297327932533	-0.104489985921932	0.641091337293608	0.898770428668406
Merged-chr6-124683825-4	chr6	124683301	124684301	+	838.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149320, intron 1 of 11)	MIR3|SINE|MIR	20697.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	4.28003105695434	3.99317444225926	3.99998710161803	4.22079165842115	4.1236012386274	4.07002861141275	0.108091346239678	0.82451645118767	0.958596193929081
Merged-chr18-23997051-4	chr18	23996554	23997554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011755, intron 2 of 2)	intron (NM_011755, intron 2 of 2)	7420.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	4.21771136162863	4.32270793226575	4.4405678149071	4.37736277435932	4.25169830400775	4.54680894384479	0.166965488660663	0.711700352419497	0.92478339732604
Merged-chr2-113645241-1	chr2	113644741	113645741	+	612.0	f1_balb.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39849.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	3.86771914879529	4.11473078537983	4.03369490731701	3.60229187785247	3.79996184827921	4.31472860492965	-0.22665038720655	0.688650006888524	0.9172299553909
Merged-chr11-23679377-4	chr11	23678837	23679837	+	978.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	13361.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	3.28153220006976	3.00735095472917	3.42567556770177	3.29735366607919	3.70940083385306	3.32913643292759	0.856397630273375	0.196274001332582	0.584104688944259
Merged-chr1-136569736-4	chr1	136569250	136570250	+	982.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55151.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	7.65464479762499	7.48043391613335	7.40092525956644	7.79001917505021	8.14633922730638	7.90258110992761	0.632181844739353	0.00774549257787509	0.0840927644075979
Merged-chr9-7343311-3	chr9	7342812	7343812	+	782.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1085.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	3.40328188094621	3.45022903908564	3.52502860582017	3.30688984972094	3.44047574565767	3.69538867623495	0.0977314430134892	0.869077523594035	0.969772902205443
Merged-chr11-29719761-1	chr11	29719261	29720261	+	597.0	f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	1198.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	5.74827355468255	6.08174216293843	5.45409904133911	6.69087985606976	6.60988714714806	5.88763928531111	1.09950590367599	0.0033341420850996	0.0455171935384689
Merged-chr17-56279065-2	chr17	56278565	56279565	+	609.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_025836, exon 8 of 8)	3' UTR (NM_025836, exon 8 of 8)	-2298.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	2.53357443715073	2.90259919332457	3.07100136239061	2.76548389172634	2.73094823982467	2.97475828662015	-0.131597995545544	0.866095726012381	0.968757596344316
Merged-chr3-157534354-6	chr3	157533846	157534846	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	181.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	8.57621515696271	8.86540205811651	8.20501814329055	8.60446392775884	8.62784403387947	8.21928498243515	-0.113788777850646	0.664698761960163	0.907719555092983
Merged-chr15-74918630-4	chr15	74918118	74919118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36433.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.31917815331532	4.46740876622418	4.48798540678691	5.64561558742179	5.52605752075759	5.29249322199989	2.38092617716663	2.31568674414801e-09	2.3965629677496e-07
Merged-chr9-50773784-2	chr9	50773284	50774284	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-1441.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	4.57330537463436	4.55920908753546	4.34983602128312	4.38358739724643	4.51284370456481	4.12339664204628	-0.359148350707367	0.435253298601433	0.798935749708325
Merged-chr18-65696526-2	chr18	65696037	65697037	+	939.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-1731.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	6.57997527196759	6.71021604496748	6.27573825280241	6.11065510235997	6.16443526116117	6.04822511212125	-0.713010165398034	0.013440440196459	0.123411348720628
Merged-chr4-95050104-4	chr4	95049610	95050610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2112.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.73573339457243	6.77846305845648	6.46820619563866	6.3475176861704	6.51288873115028	6.18017134554005	-0.498580697073914	0.07652049114554	0.364316766331941
Merged-chr2-84961520-4	chr2	84961035	84962035	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18926.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	3.28316573808641	3.14518780805578	3.10323946178426	3.32719351736232	3.20214856129295	3.29414621603836	0.374558319967321	0.551498049755545	0.861262369052689
Merged-chr2-25228712-4	chr2	25228143	25229143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_080854)	TTS (NM_080854)	-3941.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	5.31044719586342	5.19727058829539	4.99602013946487	4.95038534327756	5.02602499306278	4.94996041011369	-0.429443520074342	0.246325306703011	0.643402690863389
Merged-chr13-51734797-4	chr13	51734300	51735300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	58947.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.45035305492347	3.52852428753178	3.06003107771653	3.57697136074508	3.50431590281587	3.38989886455369	0.466362037134004	0.479071388711094	0.823998431318037
Merged-chr7-89248288-4	chr7	89247765	89248765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	90522.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	6.55115628790244	6.68857116615805	6.07265752186701	6.46996984717552	6.50533908032418	6.43329243145802	-0.0111433485519656	0.970263037207616	0.993405767524074
Merged-chr7-105777906-4	chr7	105777413	105778413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	9637.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	5.90788666292065	5.89309534033863	5.88922278516875	6.03670687267672	5.77148434046659	5.54220622379138	-0.159529435349589	0.617405115023412	0.888810836054056
Merged-chr2-13538430-4	chr2	13537947	13538947	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010067, intron 1 of 10)	MIR|SINE|MIR	6217.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	6.4812846977702	7.01729655956247	6.71168928129875	6.80221397361201	7.0271518948262	6.62001677833157	0.118067955962938	0.6869034246682	0.91694383648776
Merged-chr16-91062479-2	chr16	91061979	91062979	+	822.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	6666.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	6.09936922654037	6.38622140320119	5.53836080901219	5.97996604588537	6.0898970008209	5.69548863058102	-0.220938729089502	0.544666523730181	0.857889984601743
Merged-chr11-121235690-2	chr11	121235190	121236190	+	863.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1546.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	4.75840502418361	4.80464197251643	4.85567834797208	4.76105303159389	4.77618117195392	4.69026628115374	-0.131910662940583	0.736053934483039	0.933046642264646
Merged-chr5-28071209-4	chr5	28070715	28071715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153526)	promoter-TSS (NM_153526)	-197.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	8.60069463698147	8.94921378387546	8.50683043498462	8.60862420703369	8.69809856736046	8.27431078541786	-0.220038947963225	0.365205102900298	0.750391410706862
Merged-chr16-96021139-2	chr16	96020639	96021639	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145125, intron 32 of 41)	intron (NM_145125, intron 32 of 41)	-30179.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	3.69093830370332	3.93230496637915	3.73993497666672	3.62986337522846	3.65023919895754	3.47792451964155	-0.680928957404261	0.22254683370321	0.617502899118872
Merged-chr17-84182767-6	chr17	84182127	84183127	+	840.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5320.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.75375230501469	7.28142577456418	7.3271382758953	6.75151660781745	7.33839369918558	7.35285599663196	0.0508304378044473	0.869050738162678	0.969772902205443
Merged-chr2-169928777-7	chr2	169928278	169929278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34409.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	7.29055106183221	6.81004521424166	6.9389022809506	7.49122846899452	7.51719950547302	7.25894807993761	0.594001718604522	0.0250700108749376	0.187323328717708
Merged-chr1-85703816-4	chr1	85703326	85704326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013673, intron 17 of 19)	intron (NM_013673, intron 17 of 19)	32780.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	7.9391240567127	7.93344644867997	7.90320573623421	8.02978766007799	8.10622331530234	7.84586828203974	0.111372189812735	0.605438825394786	0.8835807030334
Merged-chr5-31754810-4	chr5	31754301	31755301	+	883.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	ORR1E|LTR|ERVL-MaLR	56751.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.82331053398141	5.24767138609645	5.07225173132569	5.14079930698428	4.70575307628255	4.80647276906287	-0.354358531308117	0.388165347510933	0.768151407607909
Merged-chr11-97438850-2	chr11	97438350	97439350	+	823.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11310.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.76881362180656	3.94482515500046	3.98564387541499	3.28665237301923	3.11032207762285	3.3890321908074	-2.53869002609569	6.77129275742157e-05	0.00203256034545287
Merged-chr10-86885069-6	chr10	86884573	86885573	+	910.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	106068.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	7.92233180077914	8.2435669631637	8.16025352027799	8.25823044736985	8.76825407523478	8.06825189750299	0.410513955727436	0.12582686915232	0.4745139364226
Merged-chr8-105265418-4	chr8	105264918	105265918	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033161)	promoter-TSS (NM_001033161)	770.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	4.97244836100633	4.80502128211486	5.12151379669016	5.03543118971764	5.25883396308192	5.11929781873682	0.388478578794415	0.300871565311292	0.697653874358754
Merged-chr7-31151688-4	chr7	31151220	31152220	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360351)	promoter-TSS (NM_001360351)	-549.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	8.05000906096913	8.28656667923385	8.3817372593661	8.2145544346285	8.35729137188051	8.33360342886134	0.0838955294395352	0.700504019280484	0.920919335036368
Merged-chr5-21219808-2	chr5	21219308	21220308	+	717.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	33541.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	2.90982691953472	3.09464623179789	3.2278727190261	3.3175904932758	3.05697851404619	3.35383930504397	0.706462776340845	0.289804199480104	0.687499011556393
Merged-chr6-37867066-4	chr6	37866551	37867551	+	854.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3760.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	3.49003561185842	3.45644219872811	3.68959195275093	3.41088210554629	3.55939079035162	3.70904263807994	0.0660857255484053	0.908607252963669	0.97927672033099
Merged-chr5-123682569-4	chr5	123682054	123683054	+	938.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	1807.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	6.59230170128721	6.57901496125676	6.51750955156591	6.62029871416883	6.9158679277383	6.52270230334707	0.22815813450881	0.400569953987434	0.776861179903924
Merged-chr12-108642264-4	chr12	108641760	108642760	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	6507.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	6.92922787636077	6.68462358147445	6.7185638720558	7.02363682300486	6.94656192665778	6.95616950164371	0.293864696408171	0.241057420570157	0.638142589692613
Merged-chr2-4563144-2	chr2	4562644	4563644	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	3390.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.00243138027918	5.22889175527294	5.23018925468512	6.03826238804784	5.81100332166479	5.68684551196671	1.33720233111235	8.67203508667988e-05	0.00252125330360748
Merged-chr3-100440169-4	chr3	100439679	100440679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13774.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	5.8694355160551	6.47108551984654	5.7083895365087	6.38308903727397	6.82580758668139	6.29167633235958	0.749084099180549	0.0381939644330571	0.241822545416415
Merged-chr3-104994779-4	chr3	104994243	104995243	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33034.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	5.70653378540726	5.64663450405817	5.7191750527161	5.65605359476301	5.42914104342872	5.38097299684866	-0.361163891688804	0.266102248704948	0.663886553006065
Merged-chr9-45440242-2	chr9	45439749	45440749	+	638.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 1 of 32)	intron (NM_001081270, intron 1 of 32)	-9017.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.50554754394206	2.44060390686934	2.47427445398933	2.92588877984334	2.63140175354287	2.80240515997961	1.91169603937442	0.0182641408989682	1
Merged-chr15-27715547-4	chr15	27715054	27716054	+	968.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34012.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.5733017942976	3.64662369462218	3.48012618667924	3.60817481193992	3.41039480772562	3.60613466486946	-0.119367922595397	0.834217289377858	0.961273502395445
Merged-chr9-78109867-4	chr9	78109375	78110375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081490)	promoter-TSS (NM_001081490)	683.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	6.76414640483555	7.30445763795612	7.07026085374887	6.87042295097982	6.97812761412444	7.14046805665897	-0.107081246474533	0.696838594756157	0.919671765388842
Merged-chr8-27019182-2	chr8	27018682	27019682	+	754.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4617.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	6.15410137595282	6.30891441581396	5.59561927900112	5.8255719422261	6.03475274187835	5.43217948291058	-0.461130735916522	0.216136101416249	0.609553034390023
Merged-chr3-108885099-2	chr3	108884599	108885599	+	853.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	4909.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.65026402332909	4.96006555207441	4.79334055349113	4.97319659510193	4.89292880142939	4.85931953003784	0.223036395884614	0.57075311239521	0.869253690275099
Merged-chr6-71544860-2	chr6	71544360	71545360	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355675, intron 1 of 5)	B1_Mus1|SINE|Alu	507.0	NM_001355675	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	6.1322957402973	6.54373402364846	6.25490329641575	6.72161074212757	6.77903041030398	6.31558193386113	0.490161450945291	0.104019635391715	0.430096691595796
Merged-chr1-151619452-3	chr1	151618968	151619968	+	640.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	48095.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.0551861854759	5.62611787965061	5.64563640272563	5.78198056594239	5.75340892280578	5.68058164172375	-0.103077352356148	0.753971396356041	0.938606402573212
Merged-chr11-121680971-4	chr11	121680437	121681437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7786.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	5.10305173630595	4.96854104400877	5.11094730353245	5.16561147010035	5.23858765339027	4.96188486546322	0.164168473546123	0.655127361427012	0.904151934338327
Merged-chr18-36018300-4	chr18	36017790	36018790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001167891, exon 10 of 10)	exon (NM_001167891, exon 10 of 10)	53460.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	7.1473363363589	7.54135883139457	7.05765086226202	7.34549626034064	7.00293231984581	7.10235222330779	-0.174639528061562	0.520039181644194	0.846136492496092
Merged-chr11-64837955-4	chr11	64837455	64838455	+	913.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-141080.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	3.59198745317125	3.78430608209814	3.76201428706077	4.16085922840011	4.26386656180891	4.03920085605672	1.38633797108031	0.00722627147444171	0.0799898359512233
Merged-chr3-94886198-2	chr3	94885698	94886698	+	662.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008945, exon 3 of 7)	exon (NM_008945, exon 3 of 7)	760.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	5.78464753917544	6.14379946070464	5.83499402300528	6.18636556947517	6.2915025512003	5.99663578950819	0.400770748997048	0.195116883843324	0.582787221560878
Merged-chr3-53466709-4	chr3	53466232	53467232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	2915.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	3.6861265715831	3.29818592437564	3.6766124558632	3.30302807262658	3.39031729623373	3.84028626203336	-0.132554711898262	0.833984239666444	0.961151270989425
Merged-chr5-9101624-3	chr5	9101122	9102122	+	968.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	885.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	5.58627224987826	5.46952534495534	5.74154524695752	5.88536393051983	5.6477179578368	5.7779764769521	0.322057373195655	0.315381461985078	0.709692649130764
Merged-chr7-100958483-2	chr7	100957983	100958983	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183168, intron 1 of 2)	B1_Mus1|SINE|Alu	5883.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	4.36675274784882	4.25809155845483	4.83097777521589	4.14273167267188	3.96629541656236	4.54503363885402	-0.703019039710185	0.171078838207335	0.549046475471744
Merged-chr2-129197848-3	chr2	129197385	129198385	+	951.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-888.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	8.47513651784672	8.36396778779131	7.71423049534761	8.10538668930688	8.34717489241441	7.692963686008	-0.210229315520171	0.482233047781816	0.825427202167635
Merged-chr1-119495201-4	chr1	119494764	119495764	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	9518.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	3.6422151933427	3.68293511601377	3.90743312171526	3.80417185582886	3.52892137335668	4.10883566166929	0.264068527738427	0.64331544004533	0.899740952048069
Merged-chr16-90934934-4	chr16	90934437	90935437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026502)	promoter-TSS (NM_026502)	-88.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	6.44417610987992	6.76280483863188	6.15285207731573	5.9654215676685	5.99987154864406	6.00597280199055	-0.834151455462167	0.00671455851594892	0.0758080033914624
Merged-chr19-5778241-2	chr19	5777741	5778741	+	742.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A2|LTR|ERVK	-6822.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	4.58310631980041	4.27468864162625	4.27588449012403	4.54936635635768	4.52899596620212	4.03774559366007	0.0316322489656426	0.948476568764032	0.988140911675735
Merged-chr7-100706412-7	chr7	100705926	100706926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362169)	promoter-TSS (NM_001362169)	-209.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	5.86041652645049	6.11515674166588	6.09144454649428	6.17928843921328	6.1678104229196	6.08619910278586	0.210368233092227	0.469207998570323	0.818916814788452
Merged-chr2-59238775-2	chr2	59238275	59239275	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	ORR1A4|LTR|ERVL-MaLR	77925.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.73019123626847	4.54912115328097	4.81794186901743	4.40016298433129	4.5588886821287	4.53603384747918	-0.474188687842861	0.261530870227587	0.659274772798192
Merged-chr5-145118402-2	chr5	145117902	145118902	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	4146.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	3.99515467467333	3.72689378170922	4.12734342324648	3.89336376894876	3.92376305650823	4.10569849342484	0.0597794936469923	0.908132004026083	0.979136079392054
Merged-chr2-30392273-4	chr2	30391779	30392779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	25.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	4.56922505965645	4.51513047942332	4.77137968403262	4.73187429951544	4.35070213760361	4.87140035568738	0.0991525864291717	0.822685534411302	0.958135961464233
Merged-chr7-80406379-3	chr7	80405841	80406841	+	688.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081454)	promoter-TSS (NM_001081454)	-905.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	2.11036278446971	2.08443636582175	2.0214156026273	2.37598447188959	2.22952733774916	2.37071917804972	1.85829061342745	0.0463556111804289	1
Merged-chr12-108894231-4	chr12	108893743	108894743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-29.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	6.73398715307157	6.84683804389777	6.61656503052251	7.03747991824428	6.7247601111797	6.49458761234595	0.0585651086303144	0.834780336519482	0.96138272464184
Merged-chr10-117217445-4	chr10	117216962	117217962	+	794.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026570, exon 5 of 7)	exon (NM_026570, exon 5 of 7)	7045.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	4.66319375909637	4.78323143174556	4.79532717195386	4.83674648816838	4.54105107951072	4.78559034886113	-0.0622242255359095	0.878527801023773	0.971939493791947
Merged-chr5-24039036-4	chr5	24038540	24039540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8350.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	7.38734783431021	7.50764133848079	7.3080889352664	7.38457099784941	7.48942261660389	7.0779470865051	-0.100650380535605	0.684380900589078	0.915853993305035
Merged-chr7-133775469-2	chr7	133774969	133775969	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286031, intron 1 of 11)	intron (NM_001286031, intron 1 of 11)	1334.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	3.35687959674832	3.21441063279329	3.56498221899492	3.00302368629223	3.3813584824142	3.42986400327749	-0.378164211931523	0.567619299258775	0.86820710758684
Merged-chr17-27178224-3	chr17	27177722	27178722	+	967.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-10458.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	4.12136574452768	3.91071887618524	4.37699147366824	3.47428153031822	3.63697752565792	3.97979756348856	-1.36551300374864	0.0168325404343426	0.143961560742192
Merged-chr1-60973205-2	chr1	60972705	60973705	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4709.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	4.04496777964496	3.94335442297347	4.04050551836647	3.85258895158451	3.56160260464304	3.96790210540449	-0.673406779634348	0.204846531061161	0.595546000502448
Merged-chr10-78160964-3	chr10	78160460	78161460	+	904.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8808.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	3.42413602246627	3.18325388169475	3.26369050236831	3.28944416592104	3.34492030882117	3.15678316648264	-0.0984800140978701	0.875558212833082	0.971054644903929
Merged-chr19-6475504-4	chr19	6474984	6475984	+	959.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	56746.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	4.84106848375687	4.97651266053041	5.1965686543231	4.98893108157605	4.72025381893969	5.06938641882715	-0.173873612998415	0.660476923193902	0.905981809862142
Merged-chr2-167717010-4	chr2	167716527	167717527	+	985.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25850.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.03298119996386	6.6595042564059	6.51001407505993	6.74737810824761	6.71192758924861	6.24309078369244	-0.257295637125014	0.401945957171689	0.777823507457637
Merged-chr15-12052404-3	chr15	12051889	12052889	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56382.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	3.73439858322864	3.51336959739211	3.30650480525306	3.15773617772177	3.01697585576016	3.26083294013032	-1.62712764834811	0.013109959977462	0.121490652339442
Merged-chr2-79653733-4	chr2	79653237	79654237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 9 of 17)	intron (NM_080558, intron 9 of 17)	18312.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	5.18116445638993	5.35344261886445	5.31619651534583	5.29625955785737	5.35040493763817	5.57904263795882	0.239852425523535	0.488274919100842	0.829082921160372
Merged-chr15-90678691-4	chr15	90678194	90679194	+	952.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	694.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.25724500803264	5.30208008755511	5.05229888916422	4.92999283125644	4.70162350487881	4.68920727251526	-0.943971986867744	0.0139618365933044	0.126509473947041
Merged-chr10-62500396-4	chr10	62499905	62500905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	7352.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.98056465627234	5.99416801822258	5.64003286077507	5.91652524886649	6.3496741827403	5.64428445353931	0.226913097758105	0.519571277937598	0.845844974891895
Merged-chr14-55726535-2	chr14	55726035	55727035	+	784.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-4272.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	4.19355362371933	4.48705315840856	4.53103580372576	4.16159208426603	4.27807443096105	4.25945834848211	-0.45860996589776	0.32082691949318	0.714582320177434
Merged-chr10-117865231-2	chr10	117864731	117865731	+	874.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-19257.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.30741489074175	4.99630063047579	5.11804260745163	5.87783709325185	5.48187919376197	5.77186742699012	1.09485015901303	0.00225618771859194	0.033860794516442
Merged-chr17-10310774-2	chr17	10310274	10311274	+	586.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	8587.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	3.2692102535477	3.75052731054687	3.9168178186435	3.64892474361881	3.53453622750011	3.53653032689147	-0.327509012612206	0.595193567641215	0.879394612218161
Merged-chr15-89212217-1	chr15	89211717	89212717	+	601.0	f0_balb.idr	intron (NM_026813, intron 1 of 24)	intron (NM_026813, intron 1 of 24)	658.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	5.54277640959658	5.65955087296661	5.22857698045018	5.52699495292169	5.11855736032665	5.48282839532275	-0.231524308476388	0.527040849031136	0.84973580123976
Merged-chr14-121053177-1	chr14	121052677	121053677	+	591.0	f1_c57bl6.idr	intron (NM_134082, intron 1 of 26)	intron (NM_134082, intron 1 of 26)	17603.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	2.93990240584538	2.97092849036894	2.94634174781976	3.58145338269827	3.54847625558039	3.21702492113513	2.26086131383149	0.00105992569684094	0.0188498237923409
Merged-chr8-41017749-4	chr8	41017241	41018241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015457, exon 1 of 3)	non-coding (NR_015457, exon 1 of 3)	273.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.86973791518344	6.0042986511055	5.90233150777499	7.09993635660906	7.27979066836069	6.8584337053194	1.88012014677808	1.61939022064813e-11	2.52333748089306e-09
Merged-chr14-25371157-3	chr14	25370664	25371664	+	632.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88021.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	2.61299896539721	2.37259438806742	2.71485941238006	2.36907534945155	2.19745698566336	2.54610201598592	-1.24353740785155	0.156424240519662	1
Merged-chr2-35451815-4	chr2	35451331	35452331	+	914.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	9618.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.99290606584949	5.95093957014343	5.98990230465336	5.57894829387475	5.51364171443715	5.86680753427977	-0.591790920628823	0.0580424782120623	0.311305822294011
Merged-chr12-111745852-1	chr12	111745352	111746352	+	552.0	f0_balb.idr	intron (NM_001163388, intron 4 of 5)	RSINE1|SINE|B4	-12997.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	3.93148590791495	4.22847656594379	4.46609635101945	4.23686941432163	4.42568742203341	4.7177001292258	0.653740044160279	0.186607610972971	0.571305862532512
Merged-chr17-69159340-2	chr17	69158840	69159840	+	619.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355734)	promoter-TSS (NM_001355734)	-16.0	NM_001355736	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	3.24022058525072	2.87347562896178	3.22601455832522	2.96651144001465	2.82248102116691	3.01208777159324	-0.876056240665405	0.213455555598804	0.606412300531439
Merged-chr15-8722629-4	chr15	8722132	8723132	+	846.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11825.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.83031690049439	3.73724251494052	3.94706539418591	4.44297667181478	4.44622514283124	4.30477707676419	1.65604160922443	0.00065746701483386	0.013039631836374
Merged-chr1-178330752-4	chr1	178330190	178331190	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_016805, exon 11 of 14)	exon (NM_016805, exon 11 of 14)	7125.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	4.70022144695333	5.00380126759463	5.22981514790883	5.00119638260527	5.26223394705996	5.26245791891504	0.411555894175602	0.29591091666616	0.692709629999205
Merged-chr14-14065012-4	chr14	14064505	14065505	+	913.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52514.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	4.02639513195467	4.32766477712397	3.97852256132927	4.28594272390769	3.94382657408493	3.9448358355708	-0.165071874415223	0.747523000719213	0.936632541920315
Merged-chr7-55867573-2	chr7	55867073	55868073	+	828.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	25502.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.49559540331826	5.68492538637327	5.66844137131963	5.72887113306724	5.91451668757596	5.99650861391632	0.480563866026517	0.12666778199363	0.475603035080468
Merged-chr2-27427881-2	chr2	27427381	27428381	+	724.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009500)	promoter-TSS (NM_009500)	-273.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	2.66411050641627	2.59474794067874	2.67372677573852	2.94417992177782	2.95766799858734	2.87496575186494	1.52636193239312	0.0384155016519114	0.242617376983179
Merged-chr2-4565815-2	chr2	4565315	4566315	+	835.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	6061.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.29875225113493	4.31798145101304	4.67810477235204	4.99492102725808	5.07157029352138	5.03353181634751	1.42418248511461	0.00057841258209425	0.0117817757970375
Merged-chr4-41378373-2	chr4	41377873	41378873	+	874.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355509, intron 3 of 5)	BC1_Mm|scRNA|scRNA	26410.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.72687001720342	5.70227693143914	6.01290517233156	5.24352154126002	5.09439476844084	5.58135532609823	-0.962182786814359	0.00638410516897203	0.0730886932993705
Merged-chr1-111864257-1	chr1	111863757	111864757	+	943.0	f0_c57.idr	5' UTR (NM_001081316, exon 1 of 2)	5' UTR (NM_001081316, exon 1 of 2)	661.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	5.12426083519903	5.07045029862751	5.16504732557808	4.97020738160592	4.93874641459176	4.83816984381021	-0.421446232405291	0.25302988111828	0.650400369098572
Merged-chr1-38064258-2	chr1	38063758	38064758	+	749.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019570, intron 12 of 22)	intron (NM_019570, intron 12 of 22)	65408.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	2.72557336120622	2.95507319787703	3.09659353887817	2.74747854362856	2.78747183127286	2.88154064193319	-0.622856938013067	0.390748207370437	0.769924051020271
Merged-chr16-10991177-4	chr16	10990686	10991686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	1935.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	7.63970778226663	7.52686907976911	7.60005847500557	7.71839375635246	7.9624180956267	7.628274670204	0.283122713531551	0.219116866655857	0.613224645184221
Merged-chr1-181842028-1	chr1	181841528	181842528	+	1000.0	f0_balb.idr	intron (NM_133815, intron 1 of 13)	CpG	373.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	7.84888498341234	7.74273546239611	7.87844374074839	7.66542881115673	7.53687773611376	7.7388680716218	-0.256389369114656	0.244137423379164	0.641392609387897
Merged-chr9-90042490-2	chr9	90041990	90042990	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-11777.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.52515648230478	5.42560440288666	5.83226358303525	6.51688259767798	6.64275805640647	6.29581925050759	1.57158718731231	3.25859153959489e-07	2.02042388097326e-05
Merged-chr1-88234058-2	chr1	88233558	88234558	+	819.416626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 8 of 42)	exon (NM_001281466, exon 8 of 42)	7038.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.31355871706981	3.2861923666764	3.56442675538223	3.33075690606577	3.24349659362904	3.5835155815724	-0.00502612202490443	0.993485437801654	0.9986799625278
Merged-chr8-69017609-4	chr8	69017118	69018118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71118.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	6.42851792532134	6.03820671337583	5.80787591556442	6.83479966568675	7.13724132178508	6.62073299256134	1.21665552642698	0.000172313788166866	0.00443760002655171
Merged-chr13-113442409-4	chr13	113441888	113442888	+	891.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60456.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.8513908894723	3.57513850539784	3.86148590112807	3.8181310600812	3.97525217067527	4.02583803895492	0.55719766788739	0.292548336713286	0.689761185606503
Merged-chr17-35867175-4	chr17	35866673	35867673	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175242, exon 1 of 3)	5' UTR (NM_175242, exon 1 of 3)	558.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	6.36788209373954	6.14031725045284	7.02561530945134	6.48060244503892	6.47080515069503	7.12917689720955	0.260038208645053	0.478550748430962	0.823834402333981
Merged-chr7-45719653-2	chr7	45719153	45720153	+	997.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009077, intron 3 of 5)	intron (NM_009077, intron 3 of 5)	-1567.0	NM_001033170	73813.0	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	3.03427431842849	2.86522217582899	2.98365554709618	2.98088156384388	2.6632994847375	3.0561380891425	-0.270968696752253	0.708766864319611	0.92375127577894
Merged-chr4-62502265-4	chr4	62501763	62502763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024257)	promoter-TSS (NM_024257)	-63.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	7.77363227573755	7.75429552043082	7.58804479492466	6.72624502195696	7.06541943403322	6.79714393638208	-1.23300447248333	7.95373073384793e-07	4.44468789054411e-05
Merged-chr9-95559945-4	chr9	95559497	95560497	+	984.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	180.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.32333461528465	7.52464786283779	7.346697446974	7.14425152809447	7.02541256081075	7.14783494298191	-0.451240073824579	0.0555131342778216	0.302994020075731
Merged-chr17-12372203-4	chr17	12371709	12372709	+	944.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6400.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	3.82463197759598	3.70708566196375	3.77988173369018	3.90699267370938	3.70553106212896	3.51854477615281	-0.150905721813025	0.784194627232392	0.94750955958744
Merged-chr16-76371336-4	chr16	76370808	76371808	+	884.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	1741.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.88905794952129	6.70087331700625	6.54103064768757	7.29917579118412	7.42673874016756	6.91720261944582	0.786685840009171	0.00440022422829008	0.0559404237756452
Merged-chr7-80017230-2	chr7	80016730	80017730	+	820.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7584.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.18520421559372	4.22622777102022	4.84916946283576	4.29306292955687	4.52347354502869	4.81313552637971	0.268123011465666	0.593292100145769	0.878446409826645
Merged-chr17-87300399-2	chr17	87299899	87300899	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	17513.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	3.03237894167695	3.26568105024564	3.29669581946927	3.0860280883723	3.01837313253188	3.36709658793329	-0.18063117060983	0.784857617872678	0.947770123968912
Merged-chr11-77214931-3	chr11	77214426	77215426	+	625.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1499.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	3.5884173018638	3.59821605735266	3.52506210024857	3.41150438068482	3.62125206592452	3.94177416979834	0.332810932981455	0.568519796436305	0.868604344991255
Merged-chr12-102457386-2	chr12	102456881	102457881	+	798.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11753.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	5.34520283350025	5.2691654936588	5.04444400147794	5.12324510406453	5.38411439074683	5.14519826347821	-0.00439449880581036	0.990390385502817	0.997861635852981
Merged-chr10-33951791-2	chr10	33951291	33952291	+	872.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-532.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	5.56682115410158	5.90014639817595	5.53027740417425	5.55603944611741	5.84729451733743	5.44028241355589	-0.0837313776379181	0.809486572679012	0.954749848816598
Merged-chr16-87706296-4	chr16	87705792	87706792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	7338.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.05608803157567	5.07205989512782	5.04112275945826	5.03641269804733	4.7237509946546	4.88971092498898	-0.376750433462402	0.322230833530701	0.715659500771988
Merged-chr4-135876799-4	chr4	135876283	135877283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2937.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	8.48055341547993	8.35189292658922	7.92173443369138	8.29758232587471	8.47939943521252	7.94480867751995	-0.0184529212602141	0.9444603463236	0.987726163699689
Merged-chr15-83430470-4	chr15	83429978	83430978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	2372.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	5.19545929918708	4.79439426585289	4.78484890269364	4.84939889630971	4.36257056493579	5.06448542457442	-0.361409677125192	0.427488169268095	0.794365779350231
Merged-chr6-125088841-6	chr6	125088345	125089345	+	984.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7136.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	4.24753344579256	4.23971950177036	4.24079161735357	4.00656036124481	3.9647151314588	4.43326771901014	-0.28765157642243	0.55733081415961	0.864206014246523
Merged-chr15-36792637-4	chr15	36792115	36793115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253806, intron 1 of 5)	CpG	-1683.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	7.79072672669904	7.97215338911488	8.04102796581177	7.67941979234308	7.90953413956102	7.94520171565645	-0.123967010518322	0.584441661448333	0.874568023559098
Merged-chr3-152478146-6	chr3	152477652	152478652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	81468.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	6.45833393110507	6.61982284846148	6.75686667965292	6.60859912354324	6.79778695503609	6.48401629567599	0.0561201372958934	0.836843816706667	0.962001762335242
Merged-chr1-171033964-2	chr1	171033464	171034464	+	778.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Asn-AAC|tRNA|tRNA	15038.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	3.61530112684765	3.77018005619459	3.34688747986745	3.72074137482558	3.5814254525147	3.65202568607202	0.182137048281519	0.755518140520877	0.939323333778519
Merged-chr15-28416815-1	chr15	28416315	28417315	+	715.0	f0_balb.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	213049.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	2.96971272978346	3.08596519228205	2.85714311789102	2.99643450360021	2.89337627269382	3.22549845746976	0.278733881809305	0.689018241587613	0.917235946766438
Merged-chr9-104261513-4	chr9	104260952	104261952	+	899.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 1 of 56)	intron (NM_001359740, intron 1 of 56)	1478.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	5.05520119246663	5.5787491790863	5.36499013095577	5.45966791584429	5.7080906831622	5.45906206488615	0.385074028151405	0.291187449305308	0.688953904178097
Merged-chr1-45861303-2	chr1	45860803	45861803	+	718.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64291.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.77607459954379	7.07927506533716	6.83497724078764	6.94741357107805	7.09415271939507	6.89330506892273	0.120748531618832	0.637804362084949	0.8973803061326
Merged-chr4-8910530-4	chr4	8910022	8911022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	159198.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.14990409241056	4.12870928727425	4.04036902179594	3.9514740333051	4.17947583081611	4.15669817123987	-0.0256680935283747	0.957501920918881	0.98996830630481
Merged-chr10-79746638-4	chr10	79746139	79747139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172551)	promoter-TSS (NM_172551)	-58.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	4.69977267691811	5.02001349335822	5.05717205604214	4.85695980526631	4.87528845357238	5.46953811128954	0.332515015059814	0.433881843780464	0.798056017818821
Merged-chr2-18971762-4	chr2	18971233	18972233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	URR1B|DNA|hAT-Charlie	26388.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	4.34159685925935	4.74022109325734	4.15817251843141	4.27700143801434	4.22644035801663	4.32406608220549	-0.455471662652346	0.34296041801003	0.731850600409781
Merged-chr9-108559209-2	chr9	108558709	108559709	+	770.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 9 of 9)	intron (NM_175143, intron 9 of 9)	-1292.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	4.06978522752927	3.84985148763486	4.27720317063579	4.09891362489643	4.1899310569178	4.21409352829207	0.287443184731059	0.559562633041436	0.864986578702902
Merged-chr2-27712305-2	chr2	27711805	27712805	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	1722.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.56467369708814	5.83405520928592	6.62710581228611	5.69855761674679	5.71618443471626	6.07889440275981	-0.427294410676114	0.288795229915864	0.686161831210965
Merged-chr9-66883856-4	chr9	66883330	66884330	+	898.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	35875.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.95870819906449	6.08697018304842	5.80133608163735	5.36205882956355	5.67774185256235	5.65161535807728	-0.700911679092966	0.0303344442448781	0.210427550373688
Merged-chr1-36244271-4	chr1	36243773	36244773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198899)	promoter-TSS (NM_198899)	29.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	7.17064091943293	7.37032523073377	7.23474499163165	7.2278405441094	7.05902917265285	6.8328928441677	-0.309837249182167	0.218901309021571	0.613128894826908
Merged-chr10-99466843-2	chr10	99466343	99467343	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-142328.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.24800491639888	6.33092516750122	6.38087403948305	5.89613055066946	6.26549767619768	6.14351350270245	-0.338250705871459	0.246180472820456	0.643286900808482
Merged-chr19-8713026-4	chr19	8712540	8713540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 2 of 9)	intron (NM_001161413, intron 2 of 9)	857.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	8.08158973721396	8.43371645739649	7.93210091669112	8.06058006656273	8.4966809575766	7.90663413905086	0.0221839272552393	0.934754024328848	0.985727536128156
Merged-chr17-26942623-4	chr17	26942116	26943116	+	904.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281491, intron 1 of 18)	intron (NM_001281491, intron 1 of 18)	1164.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	4.10899223586437	3.79410619259941	4.1134036249297	4.47973173561	4.04469480779236	3.87734375121536	0.432949768374486	0.417949973729845	0.788440971405969
Merged-chr4-129671656-4	chr4	129671179	129672179	+	812.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008468, intron 1 of 13)	intron (NM_008468, intron 1 of 13)	1088.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	6.63314194110959	7.04786758034415	6.54072521646176	6.71082135106863	6.80178439103368	6.35019964916123	-0.197694668265316	0.511942180685734	0.841619835183182
Merged-chr1-165678302-2	chr1	165677802	165678802	+	763.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	29792.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.66362854398646	3.23947491263274	3.57577549346296	3.59650749983197	3.34463978192773	3.79558925725465	0.286236624360196	0.644389306409466	0.900210434145893
Merged-chr9-40759801-1	chr9	40759301	40760301	+	1000.0	f1_balb.idr	intron (NM_133733, intron 1 of 6)	(GA)n|Simple_repeat|Simple_repeat	-41472.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.77856890724149	4.74923643811227	4.84926483134669	4.42542992825338	4.11964314068062	4.30588427665845	-1.27341866291743	0.00354348855242489	0.0476000462196728
Merged-chr6-17764506-4	chr6	17763996	17764996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	15326.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.18902689440719	5.15829985959087	5.29830304934437	5.69458578096203	5.6294171248082	5.62490845850495	0.852257631283411	0.0097058978685569	0.0984050830291209
Merged-chr7-80232055-2	chr7	80231555	80232555	+	839.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178752)	promoter-TSS (NM_178752)	750.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	4.96232784365831	5.01268364706967	5.28171135389301	5.01916179663902	5.02268986193141	5.09257531745179	-0.0837879301343772	0.821616992853278	0.958023303204974
Merged-chr2-172443671-2	chr2	172443171	172444171	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	RSINE1|SINE|B4	3093.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	2.78430878088923	2.70592560121496	2.83838083999768	2.55292353374656	2.50913339309206	2.731170097223	-1.01230389328138	0.185101922826457	1
Merged-chr17-70989678-4	chr17	70989183	70990183	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	833.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.0939727942054	7.29844669195517	7.15596017360811	7.21013520078626	7.3418517760411	7.24960634093344	0.124425386986181	0.598017178214732	0.880533230077179
Merged-chr7-19083292-3	chr7	19082757	19083757	+	766.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190491)	promoter-TSS (NM_001190491)	-592.0	NR_126095	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	3.70898581966181	3.75057630714543	4.20592953301691	5.15693414905555	4.51087904425525	4.3256663717055	2.21043728063928	5.88184404041497e-05	0.00180529870496071
Merged-chr13-76130093-3	chr13	76129589	76130589	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081352, intron 18 of 43)	intron (NM_001081352, intron 18 of 43)	31355.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	3.61705037794334	3.6707833733799	3.60290361620395	3.09144622624841	3.3056278444284	3.34563918489669	-1.47501841967029	0.017426967966879	0.147364141319926
Merged-chr3-89203961-2	chr3	89203461	89204461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077411, intron 2 of 10)	intron (NM_001077411, intron 2 of 10)	1036.0	NR_122037	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	4.20969165108234	4.08684007992494	4.20113258406771	4.15132550355825	4.35574613105783	4.1763177446112	0.201707895633375	0.666053807834442	0.907960570164785
Merged-chr10-111176520-2	chr10	111176020	111177020	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	11718.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	2.84038521340149	2.79155332049873	3.04024176795188	2.78613838477246	2.56089835344764	2.75887245345534	-0.995340503834316	0.1837095971116	0.567076278248332
Merged-chr9-44986611-4	chr9	44986102	44987102	+	998.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_013487, exon 5 of 5)	3' UTR (NM_013487, exon 5 of 5)	4816.0	NM_013487	12500.0	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	5.68890166369266	5.60027792365545	5.20293860728611	4.82364925421443	4.84447614095547	5.02021595519745	-1.30028451055006	0.000519798013580896	0.010799339104629
Merged-chr17-69156192-2	chr17	69155692	69156692	+	705.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013813)	promoter-TSS (NM_013813)	-552.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.57193765756261	5.56958331842037	5.33449286690383	5.78563971211957	5.25548622832572	5.11902631223338	-0.146048921463392	0.700789278073848	0.921002460903367
Merged-chr4-62481425-4	chr4	62480914	62481914	+	993.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	1347.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	3.68705147013661	3.66260432148601	3.7784618054301	3.68290407610855	3.422618536861	3.41619028511914	-0.681755651406239	0.232137113875498	0.62841737877322
Merged-chr9-57769517-2	chr9	57769017	57770017	+	820.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3657.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	3.72385553750357	3.68183593332151	3.70089853497814	3.76469693410348	3.80326142120454	3.96882840272832	0.460568607533538	0.381565759708483	0.76320489744768
Merged-chr2-160220725-4	chr2	160220217	160221217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106777.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.31401340694454	5.17609632319507	5.4024699714727	5.10675968344657	5.07918906173536	5.31810853209144	-0.26780797723439	0.451935187563202	0.809286173636239
Merged-chr7-123370001-4	chr7	123369482	123370482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122643)	promoter-TSS (NM_001122643)	-67.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	8.63662862143471	8.75520868303835	8.4088001795824	8.35464656197904	8.69569317950521	8.35692307260025	-0.176716330954935	0.443820071762912	0.803884349333946
Merged-chr6-54955858-5	chr6	54955407	54956407	+	899.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15754.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	6.70482497744359	7.00532018684119	6.72595822680572	7.54373447014849	7.8298715063203	7.71991861162905	1.30758924053219	2.08118813834398e-07	1.36034173303477e-05
Merged-chr4-120032532-4	chr4	120032056	120033056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-128650.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	5.65911635080289	5.20204550390053	5.04729577418753	4.89801250286945	4.2945903174994	4.7680943021402	-1.43623841057098	0.00132679516465859	0.0224771411566475
Merged-chr11-94087015-4	chr11	94086561	94087561	+	844.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 10 of 26)	B1_Mm|SINE|Alu	42856.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	5.08855355075202	4.98142312254184	4.87160288957172	4.94169703171495	4.82649358968027	4.82158675786597	-0.274209123587043	0.471392507664763	0.81999367601546
Merged-chr5-74016965-3	chr5	74016467	74017467	+	798.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177561, intron 4 of 8)	intron (NM_177561, intron 4 of 8)	51444.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	2.21935308934101	2.08189507710461	2.01871189462195	2.37415716164239	2.11378939467283	2.36874320177089	1.25260661287239	0.180733346277384	1
Merged-chr5-143033084-3	chr5	143032587	143033587	+	590.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	72732.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	5.32390362437586	5.58476960142559	5.41749334032203	5.19822035219527	5.350107929289	5.328072903115	-0.303227948151078	0.377914583378004	0.760222685045705
Merged-chr17-21961884-2	chr17	21961375	21962375	+	599.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	589.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	5.23923990460455	5.32741968611432	4.82545298530408	5.82210609281694	5.42506649919885	5.40796516958503	0.791069937380138	0.0410276582128955	0.25274161363627
Merged-chr10-81299757-4	chr10	81299290	81300290	+	903.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	6827.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	6.43438240150708	6.33198783597446	6.18139787197559	5.96558813211118	6.05888200834139	5.89350911074439	-0.584125064182714	0.0426244959642536	0.258891842517983
Merged-chr12-33332220-4	chr12	33331698	33332698	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 2 of 7)	intron (NM_001033436, intron 2 of 7)	29683.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.3770232158442	3.36775105387116	3.38020439101068	3.34725611556957	3.19838173780632	3.45096490928811	-0.180355042858187	0.76498871612391	0.942108083032718
Merged-chr4-128668816-2	chr4	128668316	128669316	+	600.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	14114.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.54691072559593	5.29582957305306	5.50999168739895	5.42007484080341	5.10826518552313	5.72715750997269	-0.0471174785635364	0.898967104760173	0.976432549466174
Merged-chr11-114898247-4	chr11	114897730	114898730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 4 of 6)	intron (NM_170758, intron 4 of 6)	8189.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	7.99271446146518	7.81500058606916	8.01418165306305	7.73563502574214	7.98681792753286	7.80686669290816	-0.127849589941073	0.567871902244028	0.868401919464844
Merged-chr7-28389037-2	chr7	28388537	28389537	+	884.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	intron (NM_026042, intron 3 of 3)	3653.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	2.62424574000273	2.48398418508873	2.74702878568892	2.79434098915448	2.53619176988152	2.69754213715865	0.328263206327095	0.670503550067202	1
Merged-chr7-45523972-4	chr7	45523479	45524479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	2289.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	6.75039527260687	6.18846328741107	6.2514778134957	6.48246090081788	6.37672646887057	6.35252002942746	-0.0398563825599036	0.896244099214359	0.975793383188212
Merged-chr6-32396002-2	chr6	32395502	32396502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115139.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.10340478683255	4.95558010090219	4.50168921909107	4.84799566139032	4.94350629421923	4.42546627637589	-0.265469556145711	0.5625346052577	0.865745518569294
Merged-chr19-29806600-4	chr19	29806102	29807102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172836)	promoter-TSS (NM_172836)	-593.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	7.13127239043473	7.27579856547894	7.14685769458742	7.43309413157552	7.07195253166426	6.93365119000858	-0.0291102294959478	0.911265191279057	0.98004232415071
Merged-chr5-99906353-4	chr5	99905850	99906850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	72588.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	4.6650378187215	4.84434886360066	4.73038184478384	5.27766890414532	5.47479568953782	5.65474979057884	1.5066819512604	6.78903958257107e-05	0.0020364181888485
Merged-chr19-55756785-2	chr19	55756285	55757285	+	939.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	14975.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.95713430953217	3.62302820296748	3.82497354798062	3.8871890759059	3.57099078975064	3.94313768707937	-0.0180674153744982	0.974007206254701	0.994199951152398
Merged-chr19-42145532-2	chr19	42145032	42146032	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1857.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	4.65722096816096	4.47431336202895	4.96013475721421	4.21459079440227	4.18049298520729	4.30779980029882	-1.20130760482342	0.00870229965650841	0.0914499810329316
Merged-chr15-96695954-2	chr15	96695454	96696454	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	3774.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.9922948015756	3.15636212993242	3.17665177164816	3.16593341978495	3.15999971574907	3.35814852166607	0.501099132156678	0.435901384965113	0.799403653016169
Merged-chr1-37000493-4	chr1	37000005	37001005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-60978.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.45779075448715	6.30894012397184	6.18591491074033	6.38959761247744	6.61029380784609	6.40802818177052	0.246895550192176	0.375294123615183	0.758646622209238
Merged-chr4-148674747-1	chr4	148674247	148675247	+	601.0	f1_c57bl6.idr	Intergenic	Intergenic	31430.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	3.90546482861883	3.71264599539451	4.17933196085448	4.64321682628755	4.51381426655313	4.90579603675706	2.06717412341539	3.60002714559332e-05	0.0011972464377719
Merged-chr11-53529070-3	chr11	53528553	53529553	+	750.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	8865.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	3.72777498765577	3.66131783658905	3.90553296851216	3.69478504175935	3.86062937602598	3.82825056787478	0.118185645984007	0.823912810851638	0.958451755471188
Merged-chr14-73381833-4	chr14	73381307	73382307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	3482.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	7.70053749308429	7.79778483333456	6.92864607275697	7.75507958827595	7.97362924950545	6.74530466549383	0.0918522797373365	0.887675418306588	0.973836995667151
Merged-chr5-137783946-2	chr5	137783446	137784446	+	788.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144913, intron 1 of 3)	intron (NM_144913, intron 1 of 3)	2755.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	3.24596484516182	3.44556448983646	3.73859793592553	3.51838457238921	3.16547548337611	3.45485242641786	-0.378851082043173	0.551816292796231	0.861486924293384
Merged-chr11-59809212-4	chr11	59808697	59809697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	404.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	8.24716818816258	8.77116245795049	8.0520694009	8.13462091093207	8.53857104391668	8.15838377775994	-0.147641779482118	0.595471321568869	0.879539491694225
Merged-chr6-28869371-3	chr6	28868872	28869872	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-37625.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.72503092601014	3.71659674643708	4.24602637922053	4.1740295550694	3.83811180654751	4.00339636259345	0.30322322645058	0.581335008627411	0.873278833301446
Merged-chr4-109121387-2	chr4	109120887	109121887	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	-3351.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.55558337453295	4.64477669564881	4.79856901749155	4.65451558831009	4.60340291278129	4.82698466735894	0.0656050507089264	0.872986678229972	0.970350599422374
Merged-chr4-32251183-4	chr4	32250685	32251685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-166250.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	8.18612021427963	8.38399132305611	7.94170476938451	7.91147433897868	8.18002035380707	7.89323808116574	-0.257453585423039	0.28311468978161	0.681105823209534
Merged-chr11-119046586-2	chr11	119046086	119047086	+	702.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5673.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	2.12539794049338	2.02378956329566	2.22273404182875	1.84311876662113	2.0168868354434	2.03606468466124	-1.23665309873862	0.208218584412926	1
Merged-chr5-67831540-3	chr5	67831100	67832100	+	704.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	15831.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.21094998126074	4.68097917293108	4.58561162242759	4.89873364447506	4.84685259001051	5.08637027528121	1.00732012773945	0.0203431541539086	0.163294729967049
Merged-chr1-88220474-2	chr1	88219974	88220974	+	721.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_201641)	TTS (NM_201641)	-6546.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.49349081126666	4.403697353919	4.57276288955216	4.4339668344238	4.34813970180104	4.75093862111639	0.057105096195646	0.897023175220553	0.975903813874861
Merged-chr17-51178207-3	chr17	51177723	51178723	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1129.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	7.73776717125054	7.8958989911561	7.65965983942757	7.98731079269817	7.88014405260776	7.65982110903654	0.117883900168485	0.608910369974952	0.885053989692691
Merged-chr6-5361650-2	chr6	5361150	5362150	+	984.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-21736.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.02981669063511	4.26406739911446	4.42130740422213	4.58782848387418	4.52809961671712	4.52969980965038	0.801616559229122	0.0759586669660862	0.362702805768179
Merged-chr7-30958441-2	chr7	30957941	30958941	+	702.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_017405, exon 9 of 10)	exon (NM_017405, exon 9 of 10)	-1638.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	2.64256536284748	2.60456042285365	2.80224470224687	2.71887868737555	2.69642977281016	2.81505031910735	0.326837555784932	0.656738645758492	0.904693205515276
Merged-chr15-91172371-4	chr15	91171860	91172860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	19647.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	5.64508027047307	5.56670615501549	5.27993926840582	5.33058121818482	5.44896145778892	5.46907767030042	-0.194127391199486	0.569136047924638	0.8688875602138
Merged-chr1-134556386-4	chr1	134555879	134556879	+	843.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3799.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	3.58568999695337	3.41672485859329	3.37429465756918	3.58461139364818	3.6498299973382	3.81879811441291	0.769190577056502	0.180987775409123	0.563208452681188
Merged-chr9-13622485-1	chr9	13621985	13622985	+	683.0	f0_balb.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	2496.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	2.97372710101303	3.13475193672553	3.01529477563665	3.01129833547825	2.5899879007857	3.08810656796246	-0.612459553843634	0.423172139465197	0.791863924096789
Merged-chr7-16399638-2	chr7	16399142	16400142	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG	-1554.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	8.41355576778199	8.52911642954111	8.45101810489971	8.42614488148528	8.78152981110492	8.3306118931094	0.0957884014989951	0.673872637872647	0.911675494180418
Merged-chr5-31880619-4	chr5	31880131	31881131	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	MTD|LTR|ERVL-MaLR	182581.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	4.97706180945842	4.82759907885818	4.98612284500702	4.76484254263311	4.61304441195101	5.08307742924234	-0.242936069234639	0.548594515036638	0.859834070202846
Merged-chr5-38558126-2	chr5	38557626	38558626	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	3469.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	2.83578199308578	3.06532614821206	3.36126588905461	3.17300989058902	2.91690981692933	3.37989588205076	0.277412422815876	0.699080201658776	0.920515737149593
Merged-chr18-69627805-4	chr18	69627315	69628315	+	918.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	281655.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.30096783049286	4.09073745117144	4.23690198716576	4.82313662403823	4.84546105929474	4.44449321012855	1.3459230584242	0.00296917565999497	0.0417950703311466
Merged-chr18-30507187-4	chr18	30506673	30507673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	234308.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	6.51971266119424	6.83617767161147	6.19985517888277	6.91696756324003	7.40730467880951	6.64584203595917	0.751716282647907	0.0243426705559036	0.183719268173753
Merged-chr11-76579110-1	chr11	76578610	76579610	+	724.0	f0_balb.idr	Intergenic	Intergenic	-1371.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.29109580087785	4.32094099519353	4.43926231679226	3.66535355881104	3.50514704185048	4.12902523293935	-1.7321024267516	0.00189710148457365	0.029682967342686
Merged-chr10-79908743-4	chr10	79908235	79909235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198107, intron 1 of 14)	CpG	203.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	7.83607701937519	7.78887613306023	7.81032153436183	7.99041504481856	7.95367120312473	7.67260409113873	0.10642482512237	0.633904191663619	0.896246516345178
Merged-chr7-64392295-4	chr7	64391782	64392782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	-46.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	7.62001853284273	7.90888973969576	7.42304262715544	7.64308640744874	7.73231638096994	7.6514708506383	0.00395684495783021	0.987037669266255	0.997161899445921
Merged-chr12-4476571-4	chr12	4476028	4477028	+	767.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	654.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	5.32416432034801	5.59454875656227	5.66263073314297	5.41714370189242	5.11891834584338	5.45433613992063	-0.391914642298329	0.268732976089666	0.665953881361316
Merged-chr11-85521145-4	chr11	85520623	85521623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	167959.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	6.35508764409952	6.21130649999659	5.69691071956519	5.7136213235863	5.60291491552436	4.93571158309277	-1.16471368655484	0.00460300104634542	0.0578297615981142
Merged-chr11-106823430-2	chr11	106822930	106823930	+	654.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_025481, intron 17 of 18)	B1_Mus1|SINE|Alu	34178.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	3.22817641383106	3.19921255552083	3.53759558351404	3.07697241397297	3.02540717871007	3.29710802748058	-0.804851712257933	0.219349409016437	0.613520643565823
Merged-chr17-88441547-4	chr17	88441035	88442035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355742, intron 1 of 5)	CpG	831.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	8.07813572565961	8.38029435113134	8.27164586146852	8.11088166097069	8.10815844509454	7.94745301466226	-0.265857884784682	0.226236462084676	0.621140322788657
Merged-chr10-118796100-4	chr10	118795580	118796580	+	871.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72823.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	8.32718325057631	8.35375430311715	8.04184696788982	8.24980488229693	8.60421784962371	7.98205004014892	0.0846437516824113	0.740931298571125	0.934712654423072
Merged-chr10-39266766-4	chr10	39266276	39267276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-102982.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	5.31203675717524	5.63107815246006	5.46327678930672	4.95550878563998	4.24888454648168	4.9161022633521	-1.57015896395831	0.000355995893958788	0.00801900392540175
Merged-chr9-61251888-4	chr9	61251396	61252396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41913.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	3.33220365828561	3.60854182757846	3.54631105250532	3.5679845871145	3.37086715799715	3.56358327011941	-0.0053014712722076	0.992804449783252	0.998584818828585
Merged-chr6-38551333-4	chr6	38550825	38551825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-9.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	8.74249068848591	8.85997662774641	8.32492492270317	8.5981536300244	8.66323690151813	8.61184375467719	-0.0608190037243404	0.792460689888325	0.949977808464961
Merged-chr7-7280080-3	chr7	7279560	7280560	+	612.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1771.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	2.99885829082665	2.95493097588303	3.08733876811408	3.21820876445323	3.19921686255701	3.32892288862966	1.04038202243227	0.108044515867631	0.439058804273972
Merged-chr3-107330806-3	chr3	107330268	107331268	+	739.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2521.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	3.78903217091747	3.96406661354184	4.06459173910564	3.84504599745899	4.11825689376739	4.22070489483544	0.383346083526022	0.453546610417251	0.80983494973791
Merged-chr2-145888576-4	chr2	145888075	145889075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_028724)	TTS (NM_028724)	-14666.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	7.62109248737244	7.62242210468916	7.34464137365705	7.72914112299172	7.78430752996531	7.67758969223957	0.275146362088667	0.228105492456485	0.623077992788366
Merged-chr18-33720386-2	chr18	33719902	33720902	+	936.416626	f0_c57.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-74490.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	2.23655763211663	2.2172267188018	2.57957457236825	2.73838569281672	2.57174008026387	2.77671582143283	2.27760251320253	0.0128837029004317	1
Merged-chr10-80682318-2	chr10	80681818	80682818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6025.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	2.7236366619734	2.75824654822389	3.3051369445878	2.93276567402191	2.7085291529524	3.11311778487201	-0.123768363055177	0.872661197886963	0.970261003150518
Merged-chr7-24885520-2	chr7	24885020	24886020	+	597.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_001360119, exon 3 of 6)	exon (NM_001360119, exon 3 of 6)	607.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	5.57504127457179	5.33159350017555	5.81173076063062	5.78722492407038	5.69198648571779	5.58868196894128	0.222165088610066	0.509859330601861	0.840593094527851
Merged-chr6-129623930-4	chr6	129623442	129624442	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286018)	promoter-TSS (NM_001286018)	-78.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	6.38813500457525	6.62811560900245	6.31993180694539	6.73294722789778	6.69916939895866	6.6035998168333	0.354023518885361	0.188472301565977	0.574089449187164
Merged-chr11-103939755-3	chr11	103939247	103940247	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008740, intron 1 of 20)	L1M4|LINE|L1	14309.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	4.55714055247875	4.32966214724336	4.3084233689505	4.05814428990282	3.60448725747984	4.1004856868748	-1.36626417559707	0.00931524739338337	0.0957831975897678
Merged-chr17-45593683-3	chr17	45593148	45594148	+	824.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199113)	promoter-TSS (NM_001199113)	-8.0	NM_001199113	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.0669197501816	5.2793009290816	5.47793774469535	5.45456608450307	5.53554259576822	5.74730446835692	0.588539480849861	0.0938600829727037	0.408098365287193
Merged-chr12-110770089-2	chr12	110769589	110770589	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	32157.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	3.30370506228043	3.24848527099301	3.24766604898161	3.47782310751452	3.38347962103175	3.32022090521537	0.512023107044877	0.395830251532247	0.773144649859171
Merged-chr2-25608436-4	chr2	25607899	25608899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024616)	promoter-TSS (NM_001024616)	47.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	7.93696224179134	8.33372901519882	7.99542549491683	8.0159226785119	8.02400622167929	7.78427904472416	-0.21908058442303	0.356350366882185	0.74323101460165
Merged-chr9-122125947-4	chr9	122125506	122126506	+	794.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	8547.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	4.33742726867143	4.34440549236753	4.07785334238975	4.39939660741399	4.11141258792739	4.54813827666865	0.235727098685113	0.623419602940406	0.891419753943245
Merged-chr4-8646275-2	chr4	8645778	8646778	+	573.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-44128.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.09958356402025	5.63916160655943	5.33535740477603	5.54009373669989	5.6296754129883	5.04750710704611	0.115498630496173	0.769917407307578	0.943288660483433
Merged-chr7-16315392-2	chr7	16314892	16315892	+	955.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133234, intron 3 of 3)	B1_Mur4|SINE|Alu	5809.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	3.51703510573166	3.66456031699789	3.58563328550979	3.53134506428983	3.45317929710109	3.54873493714315	-0.300084068859984	0.594404708253998	0.879040735171041
Merged-chr4-133584736-2	chr4	133584236	133585236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_172876)	TTS (NM_172876)	363.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	6.51251089243081	6.75290146467416	6.49731991194992	6.11757659371399	6.4123750215371	6.13689866775758	-0.58218931793809	0.0421693080798115	0.257132037718376
Merged-chr13-52605210-2	chr13	52604710	52605710	+	802.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	8328.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.26324790860987	3.89051918344386	3.96049402070376	4.0931242189264	3.92845606155594	4.21696991862278	0.0714586840075306	0.888500918962706	0.974043020158646
Merged-chr4-150080490-4	chr4	150080002	150081002	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7001.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	6.94207737722738	6.96338867479781	6.86415842021065	7.08722532402661	7.35943111734585	6.87752449639897	0.317539048966531	0.224814012623076	0.619740315016701
Merged-chr9-41068081-4	chr9	41067583	41068583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	MLT1E3|LTR|ERVL-MaLR	11423.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.001878251085	4.92680196840984	4.98011362627615	4.79241867910333	4.86621927627088	4.97448996059216	-0.206100267064406	0.584972775585197	0.87477799647552
Merged-chr11-116869857-4	chr11	116869377	116870377	+	966.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15877.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	6.20040249015905	6.31309659908254	6.00183146557214	6.10712883417938	6.20514907048671	5.9666724222067	-0.139593344305323	0.635117075530656	0.896439353901449
Merged-chr4-22350258-2	chr4	22349758	22350758	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	IAP-d-int|LTR|ERVK	-7285.0	NR_104379	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	3.26015381019457	3.17990144707605	3.31260488552627	3.67195628372604	3.87867603697536	3.66677064850254	1.90791598306049	0.00149586105772814	0.0246719277077732
Merged-chr4-88702453-1	chr4	88701953	88702953	+	606.0	f0_balb.idr	Intergenic	Intergenic	-11185.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	4.76346835785881	4.75013213662234	4.91938512094087	4.58728211803253	4.54818135125282	5.34456719548175	0.133978978513946	0.771450839865034	0.943614978016208
Merged-chr11-97782459-4	chr11	97781964	97782964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028078)	promoter-TSS (NR_028078)	-25.0	NM_022891	65019.0	Mm.140380	NM_022891	ENSMUSG00000071415	Rpl23	2810009A01Rik	ribosomal protein L23	protein-coding	8.25576780540742	8.30456186241821	7.86647713161423	8.03118929981168	8.18203363356848	7.93890033316112	-0.148317852345444	0.531030961623512	0.851378188817981
Merged-chr1-91065086-4	chr1	91064580	91065580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	11636.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.64511703337773	6.63767241026109	6.2599662672125	6.3575189512027	6.28282789747822	6.04902961201811	-0.478307672316038	0.101566166516475	0.425149289843186
Merged-chr13-101768794-2	chr13	101768294	101769294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-577.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	7.13311593662855	6.72094335931312	6.69039016537912	7.20987607956367	7.15525741005828	6.68101307068723	0.266415308326389	0.364136895603466	0.749588154903966
Merged-chr17-43072486-3	chr17	43071997	43072997	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	55942.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.27401185986109	5.03960911159601	5.30124357466822	4.0122659036044	4.20890744979279	4.34909443881218	-2.48087483029362	4.11410366526383e-08	3.24479941023007e-06
Merged-chr7-30411806-2	chr7	30411266	30412266	+	842.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2022.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	5.51819167858456	5.53257998738295	5.95799585988339	5.5261296815703	5.5284723882603	5.63815438422662	-0.206394854060124	0.541950139745597	0.857018905554292
Merged-chr9-55938167-4	chr9	55937669	55938669	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081341)	promoter-TSS (NM_001081341)	-50.0	NM_001081341	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	5.57599894109802	5.52307955409127	5.68540976861958	5.68273208382154	5.08636057050023	5.28403729326415	-0.419219023618406	0.25153823972882	0.649003529938392
Merged-chr10-20595622-3	chr10	20595078	20596078	+	903.0277710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013875, intron 2 of 12)	MER102b|DNA|hAT-Charlie	-47250.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	2.81965676557163	2.70794651682525	3.19589342054671	2.96434221683899	2.56324976502768	2.87218069526126	-0.536519545561536	0.491903673168366	0.830829065918357
Merged-chr4-46039235-4	chr4	46038729	46039729	+	966.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021883)	promoter-TSS (NM_021883)	7.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	3.2744513182006	3.44965559712672	3.70920917658391	3.20286241599326	3.09994210995054	3.26115061176875	-1.20000249060033	0.0606106984434669	0.318852816342163
Merged-chr12-4133730-6	chr12	4133397	4134397	+	870.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138305)	promoter-TSS (NM_138305)	-256.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.11813436447566	4.37965102594918	4.57353754923891	3.90759856750663	3.32557593552586	3.96671250372182	-1.82582827024439	0.00265490139939846	0.0383722486783302
Merged-chr2-132570987-3	chr2	132570489	132571489	+	745.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355651, intron 2 of 19)	B2_Mm2|SINE|B2	7259.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	4.3727767389462	4.03611159259533	3.94782707097625	4.06482087403786	4.05500466917562	4.21221623624485	-0.0905283865541199	0.856022576870679	0.966352723941166
Merged-chr7-98307470-3	chr7	98306953	98307953	+	930.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2089.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.33204989576883	6.42806920609393	5.99965876741592	6.1937534093224	6.09382384581537	6.03729119748365	-0.279451427097189	0.345678569609584	0.734097053592995
Merged-chr13-35512154-2	chr13	35511654	35512654	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-147708.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	3.38301236837303	3.5298540970155	3.83996048520654	3.54418777791619	3.58685017121676	3.86155468092399	0.26208158746764	0.655270225180381	0.904177720420701
Merged-chr13-60699049-2	chr13	60698549	60699549	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	87315.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.5976348910398	3.87966175126664	4.61802013965545	3.62062682881398	3.49058186246719	3.99670340488787	-1.14823185783881	0.0735540438770283	0.356389965813764
Merged-chr16-5013591-4	chr16	5013080	5014080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133185)	promoter-TSS (NM_133185)	-27.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	6.00573669946037	6.18372703142262	5.93074819074446	6.07783154284773	6.14054801309944	5.84027762507604	-0.025753166358521	0.931885243574541	0.984959488143389
Merged-chr4-136142297-4	chr4	136141819	136142819	+	918.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-1503.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	8.03872346557223	8.18707656947038	7.87547666095454	8.09819587208738	8.38846353636752	8.13338594434835	0.244822991821861	0.284502766331373	0.682238657188254
Merged-chr6-3344515-4	chr6	3344019	3345019	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55052.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	4.51526084400721	3.96878591274469	4.61605087211802	5.59349647481893	5.50862035680423	5.3648732417598	2.48540923484269	3.02147260749208e-08	2.47208154104426e-06
Merged-chr5-102037705-4	chr5	102037180	102038180	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	32241.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.90247548939393	5.60641355957399	5.71569965063457	5.65471719546501	5.89506162161275	5.64176733316011	-0.00646326905352366	0.984056113215533	0.996464361754829
Merged-chr9-110304627-2	chr9	110304127	110305127	+	698.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	-565.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	5.78372377568061	6.09346440682791	5.98742197436724	5.73323075730346	6.1097869545619	6.00280819822389	0.00222576391807603	0.994369666451665	0.998918571480046
Merged-chr3-90220894-3	chr3	90220446	90221446	+	702.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026677, exon 1 of 8)	exon (NM_026677, exon 1 of 8)	162.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	5.13071725023641	5.48359954178904	5.36837068681411	5.12770529263304	5.0226127709095	5.51509786594425	-0.221508595540533	0.55893164233742	0.86489961641779
Merged-chr5-96806867-2	chr5	96806364	96807364	+	574.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	13479.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	4.60785454808529	4.877828203033	4.94106853629014	4.54875382740835	5.09298671832364	5.07239355410419	0.261011237857263	0.542139479748542	0.857034750433211
Merged-chr9-40760554-4	chr9	40760090	40761090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-40683.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.50836348433412	6.5496460041711	6.51498057056097	5.40468528609099	5.15446373324623	5.72589929922136	-1.94366672165935	1.31665769304138e-09	1.42281108211152e-07
Merged-chr8-56305395-4	chr8	56304915	56305915	+	918.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	Lx7|LINE|L1	10863.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.1073784261678	5.09085742546473	5.5067422537975	4.9532082619989	5.32432924243959	5.37565520836726	-0.0149485229027909	0.969009894280037	0.992925679234087
Merged-chr8-72583257-3	chr8	72582762	72583762	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357280, intron 4 of 4)	ORR1D2|LTR|ERVL-MaLR	11439.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	3.73469886076654	3.80705698856537	4.30791145742494	5.9952212548594	6.10772814527672	5.99741955096457	5.8929885756415	3.19065843420657e-19	1.88289579427986e-16
Merged-chr3-81050750-2	chr3	81050230	81051230	+	691.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	14314.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.91547929144873	6.88927024963181	7.00812436550514	6.67278900195435	6.9103319896136	6.71902006777062	-0.242501195513452	0.336582367481824	0.726578163839891
Merged-chr12-34701664-4	chr12	34701176	34702176	+	879.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-172787.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.33582954907109	4.21187007697737	4.34225673843994	4.61741252651048	4.39163298910036	4.53674097228639	0.569759844473305	0.196116076037367	0.583906195832012
Merged-chr8-84895598-1	chr8	84895098	84896098	+	730.0	f1_c57bl6.idr	Intergenic	Intergenic	-1677.0	NM_008097	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	3.4134894481794	3.29375414447076	3.71208627583193	3.41426339190185	3.01415458483969	3.8265863139836	-0.0775860858990375	0.911147531526143	0.980026994912141
Merged-chr10-45276619-4	chr10	45276078	45277078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12727.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	6.54100486946921	6.56938631371912	6.37799845494506	6.3449681824716	6.43929586294065	6.51115664319258	-0.120504484449346	0.65172912914642	0.902896807825606
Merged-chr12-12294545-4	chr12	12294038	12295038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	32399.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.42793437753969	7.46996205012861	7.20682615489578	7.46584119982991	7.68266953123247	7.3579869690595	0.202601050028915	0.404287063916314	0.77945770433258
Merged-chr3-152346464-4	chr3	152345950	152346950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252486)	promoter-TSS (NM_001252486)	-28.0	NM_133247	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	6.36204700041606	6.54756332659021	6.57875041959546	6.2569855102802	6.28192792675625	6.39308874313803	-0.307957339441222	0.256494845170065	0.653552886970565
Merged-chr9-105764852-3	chr9	105764371	105765371	+	848.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102607, intron 10 of 36)	intron (NM_001102607, intron 10 of 36)	44777.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	3.41657445518372	3.06439896233339	3.31330699581093	2.57427458842198	2.584107979167	2.65445777781896	-4.35004803510046	3.57303447911337e-05	0.00119112601337366
Merged-chr14-31387423-2	chr14	31386923	31387923	+	969.5714109999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	30254.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.72145918316794	6.50424413360401	6.98697750422509	6.65012938761293	6.94369371647832	6.76477293016892	0.0838292483570578	0.764177381231525	0.941958626520407
Merged-chr9-110655276-2	chr9	110654776	110655776	+	581.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1115.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	3.89779613874374	3.43029910099199	3.80676265866937	3.72844558874951	3.64257576475032	4.14827742471263	0.399582423283626	0.497799739824619	0.833791434757709
Merged-chr5-32138012-2	chr5	32137512	32138512	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	1540.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	6.05768550561029	6.80562879669964	6.92427824031069	6.68652461774078	6.53074299443478	7.16313652575937	0.264184546009733	0.455836007107249	0.811163679278426
Merged-chr6-50377129-3	chr6	50376605	50377605	+	735.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	5732.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	5.63895329925411	5.5882243905583	5.68107266268104	6.55911217724291	6.68301961268856	6.71474336282035	1.72994791586308	1.04352415545571e-09	1.15006036989614e-07
Merged-chr3-79593675-1	chr3	79593175	79594175	+	552.0	f1_balb.idr	exon (NM_026352, exon 2 of 10)	exon (NM_026352, exon 2 of 10)	2338.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	3.89042122529116	3.83184638763033	3.68074198847469	3.62186998271284	3.55985023597463	3.46930931380408	-0.869489238593626	0.117768371687234	0.45816676039608
Merged-chr7-75781482-2	chr7	75780983	75781983	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66855.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.32312300320707	5.39010083487284	5.29520981985859	5.43476155530024	5.65638642284519	5.45249640782955	0.361121049894244	0.281637807788513	0.679734270520554
Merged-chr4-120914719-4	chr4	120914217	120915217	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10288.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	5.10348241693647	5.34108733649631	5.17891607633853	4.77466332669872	5.18856194805995	5.33530731122416	-0.198842854307921	0.609036380751721	0.885053989692691
Merged-chr9-58623602-2	chr9	58623102	58624102	+	886.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357751, intron 2 of 8)	intron (NM_001357751, intron 2 of 8)	41362.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	4.12643174643315	4.17758058768385	4.09102817737438	4.41494823019908	4.35583867159556	4.30141093147463	0.614728213208688	0.177506614090739	0.558517567618611
Merged-chr1-36546727-2	chr1	36546227	36547227	+	900.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026241, intron 1 of 3)	intron (NM_026241, intron 1 of 3)	525.0	NM_001310533	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	4.37131632284249	4.30452726182325	4.50513364137373	4.30752432207585	4.16229921924775	4.72020732253205	0.0352541719115038	0.940474222914398	0.98684811092327
Merged-chr5-28243242-4	chr5	28242745	28243745	+	822.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	2543.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	2.94363513967973	3.13237598875693	3.43410391807575	3.15704991980425	3.06671670346479	3.55294192203855	0.365832258333951	0.597731580478783	0.880455475375358
Merged-chr2-30942230-2	chr2	30941730	30942730	+	811.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10771.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	6.09029177223124	5.96196141427661	5.92094940708	5.90839597046227	6.26240366831536	5.90858490271327	0.0930652110667092	0.762306405880249	0.941552504399722
Merged-chr7-19359575-4	chr7	19359052	19360052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-69.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	6.22467830746887	6.04191047770912	6.24150234355145	6.55867673352722	6.47058357985193	6.43679131010209	0.532972297682874	0.0514454275228546	0.289206589557218
Merged-chr5-107754905-4	chr5	107754395	107755395	+	985.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-29090.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	2.6840205368345	2.88445963341579	2.62646787712136	2.96394312446725	2.74588432268205	2.95426910184819	0.744267231705038	0.320506680722091	0.714329206729224
Merged-chr13-93497103-3	chr13	93496597	93497597	+	740.866699	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021310, intron 1 of 10)	intron (NM_021310, intron 1 of 10)	2711.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	2.86231430088928	3.06226419309502	3.1313965410543	2.98155087606688	3.06685384592752	3.14623767044112	0.201844208250846	0.764042018013085	0.9419268117882
Merged-chr15-76770600-6	chr15	76770110	76771110	+	996.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	Lx7|LINE|L1	-46765.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	7.74782900932956	7.95668675416157	7.37971520687899	7.69811887968081	7.97831911174524	7.43686528779684	0.0108033675625811	0.968810966591367	0.992866574393222
Merged-chr2-50690294-4	chr2	50689783	50690783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-219401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.49638069199325	3.03839693163842	3.39290604504701	3.22082545705727	3.07371053780393	3.56665904219548	-0.0989292494660729	0.884114755469983	0.973466734537782
Merged-chr18-84683312-2	chr18	84682812	84683812	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	ID_B1|SINE|B4	-1253.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	4.25991597295649	4.13560746926654	4.01963809794917	4.04945771553444	4.035996448133	4.36098084281914	0.00128360298042533	0.99790171986035	0.999579683478894
Merged-chr15-72810840-4	chr15	72810335	72811335	+	937.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002864)	promoter-TSS (NR_002864)	-511.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	7.32979517814298	7.84197900155283	7.37641902890785	7.49061322543381	8.04275507771278	7.46647278880266	0.233136540121885	0.425000241385006	0.792848465017231
Merged-chr4-151861978-4	chr4	151861475	151862475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-207.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	7.34244103062769	7.68939565612578	7.64943335874977	7.61710729498775	7.30160712546862	7.55810211277578	-0.106635471377961	0.667545541665655	0.90879890451381
Merged-chr14-20348133-4	chr14	20347606	20348606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360365)	promoter-TSS (NM_001360365)	15.0	NM_027475	70601.0	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless cell cycle regulator	protein-coding	7.19470918415205	7.54304738063089	7.49704921798979	7.31412190728507	7.31034660603568	6.85080580438578	-0.346244479926817	0.197500318712926	0.585555193994839
Merged-chr13-59769874-4	chr13	59769370	59770370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015349)	promoter-TSS (NR_015349)	-81.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	8.94324192917204	9.42058318773697	8.74673464099282	8.88949616706641	9.21730749786614	8.61485384044232	-0.188120640605803	0.494484131221785	0.832036472279676
Merged-chr1-134302929-4	chr1	134302423	134303423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 25 of 28)	intron (NM_001144855, intron 25 of 28)	12919.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	6.60328079553234	6.82865317911589	6.85577250570964	6.69884372253901	6.93821273149284	7.11045483110152	0.245301930858914	0.359289761012868	0.745474962829682
Merged-chr11-103223600-4	chr11	103223096	103224096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016896, intron 14 of 15)	intron (NM_016896, intron 14 of 15)	-5164.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	5.66903838094566	5.5269485867058	5.93462489087421	6.00226231212274	5.88985521428733	5.72502661732081	0.31174691284414	0.333776293369342	0.724610149725429
Merged-chr17-67342281-4	chr17	67341834	67342834	+	876.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	RMER15|LTR|ERVL	12125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.20950317134925	7.08633996910363	6.92097457281919	7.15902956773207	7.22019439448616	6.71002006001632	-0.0332286410305407	0.902778892154604	0.977585531827525
Merged-chr7-100215517-3	chr7	100215018	100216018	+	726.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12089.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	6.04006053916186	6.02496772986361	6.07374057308402	5.87181408945928	6.09593326231843	5.87766103812123	-0.143495403578018	0.626761682311237	0.892930161146364
Merged-chr17-56586603-2	chr17	56586103	56587103	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163300, intron 1 of 20)	intron (NM_001163300, intron 1 of 20)	1621.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	3.36413522923073	3.19285997415671	3.42080202316679	3.33341331511634	3.15690797041089	3.54287357422508	0.0778359896510121	0.901135901466318	0.977088121586474
Merged-chr1-149842032-4	chr1	149841534	149842534	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	80405.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.32116922516677	7.47364002762052	7.38582892098702	7.33637788434608	7.81215767941109	7.42144172520647	0.225720953518634	0.373773982856173	0.757546812967132
Merged-chr7-19229898-2	chr7	19229398	19230398	+	802.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_207525, intron 1 of 1)	B1F1|SINE|Alu	1509.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	5.00272938639975	4.94738618594295	5.12355399176379	5.09056062898977	5.00949685837147	5.50704403434198	0.388166580776461	0.313078232623287	0.707746598467115
Merged-chr8-124231303-4	chr8	124230809	124231809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-85.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.95113865291512	5.84772800301814	6.34347533027857	6.19067481495206	6.1500430160859	6.74936710632003	0.549838151844939	0.10355321131242	0.429063619504224
Merged-chr9-120927414-4	chr9	120926921	120927921	+	972.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	3381.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	5.23765292714249	5.03522573393238	5.10712254769174	5.08914820496345	4.8921605988473	4.80167050476364	-0.412968383729209	0.274262474736209	0.671699134465491
Merged-chr9-121317136-4	chr9	121316672	121317672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	19670.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	7.69516758491501	8.06282543136998	7.81000579377375	7.80117598121633	7.97113332261356	7.55256578033065	-0.105740160963473	0.669358222850077	0.909615408611738
Merged-chr10-99428526-4	chr10	99428002	99429002	+	758.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	165271.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.10042541885512	4.50044306688182	4.31745937954405	4.38303993540436	4.52572493513442	4.38547302967169	0.304777881625745	0.508227965540774	0.839777201102046
Merged-chr5-123391162-2	chr5	123390662	123391662	+	838.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3636.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.3685671300023	5.00506293692113	5.06887525991136	5.43431664652859	5.0811584634867	4.86643457473083	-0.0132229420977032	0.973570374479833	0.994039095662068
Merged-chr14-29969769-2	chr14	29969269	29970269	+	706.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019979, intron 1 of 4)	intron (NM_019979, intron 1 of 4)	1389.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	3.77529040798224	4.02581102316663	4.04703905250942	3.78190840926152	3.7573370312574	3.71942024052442	-0.627137095631554	0.232673461230385	0.628965135652341
Merged-chr14-64867051-3	chr14	64866545	64867545	+	918.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	82812.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	5.38223794448099	5.6196546796439	5.3308428545332	5.63630965117286	5.83945618435266	5.91275765524333	0.629775056754148	0.0577042301685808	0.310391982925029
Merged-chr12-20232995-5	chr12	20232320	20233320	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMERGLN-int|LTR|ERV1	582959.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	3.29844817753299	3.40757301496304	3.63085188191908	3.2603253566896	3.25879579036513	3.6012554593788	-0.2708796324854	0.661967970707247	0.9065134513884
Merged-chr17-17549128-4	chr17	17548613	17549613	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172827, intron 11 of 17)	intron (NM_172827, intron 11 of 17)	75376.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	3.33819887759852	3.44999629948534	3.4977214486001	3.57234991473234	3.6571120930522	3.51386894862519	0.58390079743947	0.308342002875114	0.704435206887286
Merged-chr14-79559004-2	chr14	79558504	79559504	+	928.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	B3|SINE|B2	-28656.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	4.88974580188179	5.49152914800777	5.21255209745302	5.678007162547	5.60120547493472	5.13667190141473	0.535989515923382	0.180065723871447	0.561720159111581
Merged-chr7-75704635-4	chr7	75704127	75705127	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-143711.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.41220962477334	5.54753152124981	5.71199434811014	5.44570072878008	5.40230493835115	5.64682027930431	-0.117013245007789	0.726646478190334	0.929939403815271
Merged-chr9-123853045-4	chr9	123852543	123853543	+	996.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1144.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	8.34394561359137	8.46309415035551	8.03967186912566	8.53775724068078	8.97346421640706	8.46821402492702	0.535758507846376	0.0335966611430579	0.223926976085107
Merged-chr8-69189665-4	chr8	69189177	69190177	+	886.1749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19369.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	6.83234224976549	7.05194558236665	6.78875329141402	6.76536147818601	6.75998088800379	6.46950836998908	-0.342848215525901	0.197331571660268	0.585333483293539
Merged-chr17-71133864-2	chr17	71133364	71134364	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49668.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.20556609554639	5.26097382374983	5.51788607362318	5.01454813556675	4.62621386045691	5.27311293606476	-0.717086866186887	0.076759303702296	0.365054191955912
Merged-chr4-129787111-1	chr4	129786611	129787611	+	906.3333130000001	f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-33368.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.87294529712677	3.85387335437675	4.51287800261306	3.875900390864	3.7169119045902	4.50609351501609	-0.102886463054906	0.864435370032702	0.968278303984855
Merged-chr16-30067023-4	chr16	30066544	30067544	+	980.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008235, exon 4 of 4)	exon (NM_008235, exon 4 of 4)	1687.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	6.37191277306075	6.17849518219274	6.23994396720932	6.24683694831692	6.11653673702297	5.96558789230819	-0.246865935831171	0.390376134975076	0.76958978415218
Merged-chr11-69995618-4	chr11	69995122	69996122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-144.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	6.57126686582842	6.31052615765869	6.35789421329297	6.60277223781179	6.95103332619097	6.83853954648121	0.615266666082184	0.0254956917229421	0.189279578594091
Merged-chr12-85648177-4	chr12	85647693	85648693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-38527.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.14178948631319	5.8671557026161	5.94946779754431	5.99560475439248	6.36772564849386	6.10277992480433	0.308729177289088	0.31382948867631	0.708219088981505
Merged-chr11-29796789-2	chr11	29796305	29797305	+	805.0	f0_balb.idr|f1_balb.idr	intron (NM_146016, intron 21 of 41)	RodERV21-int|LTR|ERV1	28863.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.22300843028104	3.02504177812503	3.29200553606294	3.15861071086382	2.78995665437719	3.13974815233328	-0.646023796793014	0.354820620492822	0.741862808502317
Merged-chr10-51524136-2	chr10	51523636	51524636	+	903.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR15|LTR|ERVK	33238.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	2.99131490123796	2.73852380023428	3.09501266010578	2.93991196760056	2.75921375320066	3.42801480748999	0.541864771487671	0.474773833512738	0.821664499521211
Merged-chr9-63124329-4	chr9	63123835	63124835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22645.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	6.82443606379667	6.79631105640291	6.74092417684505	6.32792696632749	6.68525452665105	6.55318602891871	-0.400487023965637	0.133693411212176	0.488926137304149
Merged-chr11-76483395-2	chr11	76482895	76483895	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11100.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.74564425263815	6.9439400990183	7.18807995702888	6.86747629578433	7.07081077286327	7.10277428321538	0.0814481610099866	0.757562562025472	0.939883186830738
Merged-chr13-9454540-4	chr13	9454045	9455045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178020.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.83327944623404	6.50303239339027	6.35620554559136	6.46238022640125	6.76175739462765	6.39648002848429	-0.0448420606332801	0.879731579935502	0.972203905732983
Merged-chr17-17448000-3	chr17	17447508	17448508	+	796.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025681, intron 4 of 5)	MIR|SINE|MIR	45322.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	3.48412942680621	3.39770548298509	3.49664302272195	3.49728288769239	3.52555191664843	3.61955667642738	0.322171043842721	0.571044573125464	0.869351752937534
Merged-chr14-48130983-1	chr14	48130483	48131483	+	699.0	f0_balb.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10114.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	4.49854513501641	4.77636261367627	4.80191154621388	3.67513292936819	3.52951937286957	4.15264157000193	-2.67726815495433	1.9868254470252e-06	9.90531886135845e-05
Merged-chr17-46341438-4	chr17	46340939	46341939	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13416.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	6.9412059688746	7.07719697371506	7.19157681376648	7.21300210414843	7.40010687319801	7.31771281231737	0.368999413150071	0.124076705645136	0.471380445773012
Merged-chr4-59810980-2	chr4	59810480	59811480	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 1 of 8)	B1_Mus2|SINE|Alu	5330.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	2.63874677806785	2.56299158008625	2.80725902959183	2.35714698088985	2.48430447386888	2.64221744054962	-1.01411166578639	0.210575021181495	1
Merged-chr12-103341834-4	chr12	103341330	103342330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14171.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	7.54755663248866	6.98188237585118	6.6499254795898	7.55242224465302	7.77659177312515	6.67251348314671	0.44304686304314	0.470590044427079	0.819523993651913
Merged-chr10-127323639-4	chr10	127323120	127324120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-87.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	6.97493327771234	7.04850410288511	6.9768683165959	7.24596778683535	7.70940832179044	7.2656424797215	0.648122367622532	0.0128563434950721	0.12002138780859
Merged-chr18-58570590-1	chr18	58570090	58571090	+	546.0	f0_balb.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	14350.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	3.50281242760428	3.25123980467302	3.72612762724428	3.3938128178409	3.35916944163593	3.26506020081825	-0.597565806058004	0.337529775154222	0.727414835127997
Merged-chr11-54954273-4	chr11	54953765	54954765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 1 of 18)	intron (NM_001271456, intron 1 of 18)	8675.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	4.33936782461244	4.11642165113795	4.18810696272066	4.23265776905039	3.98018359865924	4.21034864467172	-0.224074799640192	0.639413355279775	0.898099398492928
Merged-chr8-85514663-2	chr8	85514163	85515163	+	933.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22046.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.82514874796305	4.72634138207001	4.70325247001461	4.75934049821818	4.88444124864538	4.72958906183695	0.100113914197144	0.799680815289126	0.952265144270204
Merged-chr10-80271361-2	chr10	80270861	80271861	+	878.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133188, intron 1 of 11)	intron (NM_133188, intron 1 of 11)	6370.0	NM_133188	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	2.63099053638168	2.95937740584342	2.82849161129685	2.74406463159262	2.52293148313539	2.7796419296928	-0.697488828275129	0.365018795427514	0.750215732491851
Merged-chr11-70806092-2	chr11	70805592	70806592	+	776.083313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 1 of 4)	L2b|LINE|L2	6469.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.80160485020988	6.67050496500317	7.17945920541677	7.23728544344164	7.47982259746011	7.56610388597548	0.81538259152606	0.00247933569794499	0.0365004537782389
Merged-chr8-72272610-4	chr8	72272109	72273109	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32591.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	5.15157106502848	4.3328422428962	4.51864407757515	4.38015729490792	3.8768482457116	4.22018036614877	-1.39237918691863	0.00877684462543907	0.0919777944072461
Merged-chr19-41328135-2	chr19	41327635	41328635	+	718.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_031376, exon 5 of 17)	exon (NM_031376, exon 5 of 17)	56935.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	3.48096369273951	3.77372373828793	3.75283315361413	3.76391702159675	3.64050073645748	4.22672974015532	0.698224711571798	0.228635459524243	0.623870247133639
Merged-chr15-86170401-4	chr15	86169908	86170908	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15320.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	8.30006067665042	8.41152885688488	8.29946606431321	8.2431503949962	8.34051052034941	7.98325784510723	-0.188743784880809	0.389915729384916	0.769401696657453
Merged-chr4-63556923-4	chr4	63556427	63557427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1836.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	6.50003392343955	6.60727748877374	6.42123297147136	6.74471442133858	6.88528531606461	6.25429226094797	0.245545917837254	0.408122422496659	0.781926100186554
Merged-chr14-13912476-4	chr14	13912035	13913035	+	816.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	48778.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	3.19926092318528	3.46673128947325	3.14302576207347	3.39070410555676	3.29633887588293	3.65750382393383	0.642627238049592	0.316650736025894	0.71068334798626
Merged-chr3-84922015-6	chr3	84921528	84922528	+	883.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-30183.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.66074787965587	4.10501191775198	4.03127871164597	3.88029681878638	3.85997276984132	3.80396839254127	-0.297019420003019	0.579159568077494	0.872437416842052
Merged-chr15-100150749-4	chr15	100150242	100151242	+	901.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 1 of 3)	intron (NR_037311, intron 1 of 3)	-3654.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.58931757709219	4.63488134045108	4.45411017222674	4.40000969808033	4.44328092071591	4.1411786925864	-0.558696898635719	0.212830680688874	0.605443257393499
Merged-chr7-98971659-1	chr7	98971159	98972159	+	573.0	f1_c57bl6.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	132814.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.46583093297566	3.17271676916598	3.3618323397185	3.09515379758035	2.78241552436687	3.26843717984189	-1.21528239823071	0.0880891597639757	0.393838203516248
Merged-chr12-69583092-4	chr12	69582585	69583585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033236)	promoter-TSS (NM_001033236)	-57.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	7.13153552190258	7.2621215115156	7.11635169055177	6.06735782965997	5.94945144670505	5.66204020414076	-2.02255895915634	1.62683185386386e-12	3.0081205532512e-10
Merged-chr1-16659626-4	chr1	16659132	16660132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	2080.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	5.19302847530051	5.36144701507988	5.45899722257593	5.20608619386339	5.3167060900472	5.49333996415624	0.00273466018585095	0.993754645080831	0.998777772262979
Merged-chr5-72263846-4	chr5	72263337	72264337	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	60494.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.25553241089191	6.08252657410269	5.67579625193774	6.51371979806441	6.68111383084098	5.91209446307393	0.637396251207017	0.0735305471447154	0.35633769386571
Merged-chr14-56382590-2	chr14	56382090	56383090	+	915.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_138652, exon 15 of 23)	exon (NM_138652, exon 15 of 23)	17522.0	NM_138652	192113.0	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	2.86813384456562	2.79518527289502	2.78724023126094	3.15621288039924	3.29579684122493	3.11448459353794	1.80673682552873	0.0104597704832839	0.103664948751996
Merged-chr14-69136044-4	chr14	69135537	69136537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35765.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	3.81033402394906	3.73842257383207	3.71136182879051	3.7750988254837	3.5858009715945	4.11325282889289	0.246743317239874	0.65708737540089	0.904749338441592
Merged-chr14-48465142-3	chr14	48464646	48465646	+	721.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	18794.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	3.89136136675442	3.62457985919418	4.00900622381068	3.53314020398815	3.33379999347468	3.98802097505054	-0.683788205527215	0.263568555855059	0.661476013554917
Merged-chr11-44405296-2	chr11	44404796	44405796	+	649.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001303244, intron 2 of 7)	intron (NM_001303244, intron 2 of 7)	5233.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.49410542690878	3.32903587568485	3.39312910222835	3.43669182688627	3.15851227516425	3.40892275504522	-0.283944195384494	0.642808722768878	0.899532469670737
Merged-chr16-45178132-1	chr16	45177632	45178632	+	544.0	f1_balb.idr	intron (NM_001356366, intron 5 of 10)	L2a|LINE|L2	19303.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	3.5433289068039	3.72465960136236	3.58473765630181	3.49200918224678	3.51640697373694	3.4329602289188	-0.498159877773612	0.381753030556503	0.76334093111637
Merged-chr14-47396440-3	chr14	47395924	47396924	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144553, intron 13 of 18)	intron (NM_144553, intron 13 of 18)	21983.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	3.507067919037	3.38966115336547	3.38254257420732	3.02251619899895	2.83927046194295	3.17019990788016	-1.90785613352972	0.00561201441043354	0.0665191588409337
Merged-chr11-34010391-4	chr11	34009896	34010896	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17203.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	7.21092229625914	7.22008364176064	7.61610664065053	7.25606951320295	7.1400284270231	7.47881377655682	-0.0930019096300776	0.720979206263945	0.928326413116233
Merged-chr19-46979661-6	chr19	46979107	46980107	+	963.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10040.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	5.62751027161544	5.31423693008069	4.93033020835134	4.42738359441849	4.71165647210139	4.37211905041655	-1.77211551156735	9.07555004102818e-05	0.00261572001321051
Merged-chr7-101609915-1	chr7	101609415	101610415	+	757.0	f1_balb.idr	Intergenic	Lx3C|LINE|L1	-28754.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	4.1671630684333	3.9722111715362	4.61048466614261	3.94931632210866	3.98656895735257	4.29230757343132	-0.525315654747246	0.316201051048467	0.710322935001732
Merged-chr1-132346553-2	chr1	132346053	132347053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21395.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	3.62243749666284	3.92910947350451	4.51733561496096	3.43561067856984	3.33322993806553	4.00306599072478	-1.39929246676665	0.0357016478760672	0.232246322920163
Merged-chr14-95154832-2	chr14	95154332	95155332	+	584.166626	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-726422.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	1.87970743191684	2.14856856128222	1.9108670113653	2.18516060813328	2.01369784383734	2.32674665318692	1.43459781622843	0.157688541651404	1
Merged-chr8-69790571-2	chr8	69790071	69791071	+	630.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133224)	promoter-TSS (NM_133224)	-592.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	4.79295073274712	5.19477629808644	5.60660148338636	4.95895914799893	5.25379841204649	5.02587078377896	-0.286392845540743	0.498996624557483	0.834177355483594
Merged-chr10-7207590-4	chr10	7207083	7208083	+	961.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	4654.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.25707341767969	4.42153646359107	4.37553262723824	5.24675950066555	5.09294838526229	5.20948944146223	1.92189767294542	2.74966053013604e-06	0.000131490662868712
Merged-chr13-85295251-2	chr13	85294751	85295751	+	791.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5765.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.01102073777499	2.84619143291298	2.90007154684273	2.81336790014462	2.55787427672517	2.85173022583148	-0.932447614428745	0.212482553118957	0.605052814069408
Merged-chr17-67340513-4	chr17	67340026	67341026	+	949.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	ID_B1|SINE|B4	13933.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.42806142407159	6.53180776731443	6.15293123514291	6.6821289204633	6.73472288271482	6.32323448841342	0.340739129996066	0.243455193067867	0.640680222488828
Merged-chr5-64379143-4	chr5	64378637	64379637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88805.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	7.91808403414757	7.74882794853366	7.63091570227909	8.03479766015007	8.20985674750373	7.96962666648063	0.432485871827126	0.0557890979907922	0.30404108367945
Merged-chr8-13104903-4	chr8	13104417	13105417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	426.0	NM_178708	234069.0	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	8.48534488114822	8.99435468718889	8.48236532684234	8.60027929296092	8.86816030004609	8.48150001796451	-0.0249407463501328	0.921412162147868	0.982542868764899
Merged-chr1-152599513-4	chr1	152599036	152600036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	25681.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.83452905259939	6.6986561356612	6.60468453458811	6.55356198532346	6.34160053737238	6.48859079396437	-0.417283076404594	0.115457417018999	0.45366277255564
Merged-chr16-70329257-4	chr16	70328766	70329766	+	915.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15317.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.67244786265178	5.78324096963765	5.55906344450084	6.62020211040526	6.9275794069401	6.38459300173539	1.66629090455663	8.63119655687357e-08	6.27235461226494e-06
Merged-chr8-81015007-4	chr8	81014508	81015508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027554)	promoter-TSS (NM_027554)	-102.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	8.47546887027279	8.88103033265818	8.45914057894567	8.54917104614149	8.82351016993881	8.68499188581275	0.0931330230162649	0.689761268680715	0.917488557497671
Merged-chr1-72225996-4	chr1	72225514	72226514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13700.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	3.88526467303176	3.86483924320189	4.29254415686344	4.06889441519488	4.06669141317214	3.95247466603137	0.0470131369963338	0.92690162023644	0.983578869536024
Merged-chr14-73387961-2	chr14	73387461	73388461	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2672.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.82194754737121	6.80661528063202	6.67141751236035	6.54614609431786	6.87994752103133	6.55905134518931	-0.141643874014736	0.597526018238309	0.880433364120803
Merged-chr14-64633590-4	chr14	64633090	64634090	+	933.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18941.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.73287245331421	4.86572778172318	4.96355312871985	4.65416918798245	4.48826385732666	4.66057156711091	-0.597913254889583	0.140407442446895	0.500760820920022
Merged-chr9-118686604-2	chr9	118686103	118687103	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-25089.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.08794186057275	2.94652319435901	3.18568734528986	2.97841943345157	2.83315070383398	3.2017878460129	-0.307558863116773	0.655613781804752	0.90429384180742
Merged-chr13-45330641-1	chr13	45330141	45331141	+	790.0	f0_balb.idr	Intergenic	Intergenic	-59101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	2.74455440290419	2.77941063829806	2.77064119988364	2.54679939627974	2.5622641217491	2.658205458495	-1.00284720530281	0.18398983175821	1
Merged-chr4-141681981-4	chr4	141681484	141682484	+	978.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3732.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	3.04564506605329	2.86906772610013	3.11797205272013	2.96442132635026	2.78662731359949	3.34956455005116	0.162727658084702	0.82168289709239	0.958023303204974
Merged-chr14-31019506-4	chr14	31019018	31020018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	-187.0	NM_001359855	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	7.61544664310497	7.46244760599305	7.11797704459687	7.68773718326783	7.66550677753197	7.32665570096061	0.222604813551056	0.395330907427963	0.772683786180258
Merged-chr7-101029581-4	chr7	101029073	101030073	+	961.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17520.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	4.6246683847375	4.4320800549273	4.3262416170089	4.18471548183037	3.82147418243654	4.11247005194163	-1.18948240710517	0.0146697005820043	0.130577283486031
Merged-chr17-35051381-4	chr17	35050861	35051861	+	851.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1118.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	7.08189810488487	7.09591036713134	7.52602419632698	7.51164142299107	7.64758821438205	7.69980427429986	0.558521072922003	0.0269800971549396	0.19557151161254
Merged-chr16-91916816-4	chr16	91916312	91917312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14818.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.51821538875859	5.03886461044955	5.38219968238949	5.31458285824385	5.39669033738651	5.15519113123344	-0.0530417092536817	0.886124289700323	0.973689401087943
Merged-chr19-14636941-5	chr19	14636462	14637462	+	627.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38779.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.77786686788832	3.97262278431689	4.09518968633794	4.0721415904085	4.0402963448151	3.9229753209432	0.204023648351524	0.685892256176367	0.916538830253462
Merged-chr2-31761861-4	chr2	31761351	31762351	+	968.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	1678.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	6.73680852099958	6.66555585513306	6.6438453547287	6.93779424078696	6.77050708516553	6.85834300586466	0.265842289183984	0.288123699764462	0.685486270086388
Merged-chr14-54433172-2	chr14	54432672	54433672	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008608, intron 1 of 9)	intron (NM_008608, intron 1 of 9)	1574.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	3.2756717315374	3.16079770658882	3.3781550706569	3.74932532981857	3.31655372829901	3.66334173615349	1.19782399396549	0.0542412114215477	0.299079907288926
Merged-chr16-95840050-4	chr16	95839548	95840548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	58665.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.28255201796785	4.03904477274442	3.69799080317513	3.73964119958767	3.77283426905604	3.53226292777116	-1.08080762054951	0.0605092491271914	0.318564324858752
Merged-chr19-41367372-4	chr19	41366886	41367886	+	985.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	17684.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	5.53499736074826	5.89311878662557	5.65809000075419	6.12622716035469	5.92423577820111	5.90288162140573	0.497831475115244	0.117760465267255	0.458157422450917
Merged-chr10-118819627-2	chr10	118819125	118820125	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	49278.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	5.59569220610306	5.30521432853828	5.12853012287355	5.445786364801	5.39127494842752	5.36232510026045	0.0627286072195604	0.859957444721004	0.967441103100897
Merged-chr8-31123428-6	chr8	31122891	31123891	+	923.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	11545.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	3.01142844100913	3.19223327015326	3.05510782783005	2.76954673126136	2.95462142195495	3.12689129162539	-0.622972660767146	0.373095428981909	0.757006149061447
Merged-chr13-118387252-4	chr13	118386762	118387762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021556)	promoter-TSS (NM_021556)	-10.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	6.22951628459022	6.23730534857695	6.54118896630188	6.82013958220433	6.73073853395808	6.51308873084843	0.590131773886333	0.0335540248245084	0.223732935138849
Merged-chr8-25241147-7	chr8	25240630	25241630	+	952.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39588.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	5.56889769860319	5.34228722967979	5.38552112535276	5.56151375568005	5.78769537112346	5.56856196421405	0.401285406351247	0.227483444345582	0.622644333537758
Merged-chr11-14443530-3	chr11	14443027	14444027	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR10-int|LTR|ERVK	155698.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	3.14937396458478	3.024448375303	3.35604779566805	4.22968447668978	4.07989515683353	4.07562536405219	4.04401859438811	4.67725320215822e-08	3.65775267335696e-06
Merged-chr19-10841820-4	chr19	10841316	10842316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-728.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	8.81498205547826	8.90613250326403	8.41020296573999	8.59490377497911	9.0440928981075	8.28878991581986	-0.0594721092488489	0.830496154686837	0.960308134590845
Merged-chr10-88622781-4	chr10	88622303	88623303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17651.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	7.62519268361869	7.93574389201847	7.35775729455022	6.95168463211046	7.2037441988346	6.80919526635819	-0.976966358749782	0.000420701937638333	0.00916381330550011
Merged-chr5-142900316-2	chr5	142899816	142900816	+	685.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5078.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	3.38275375405372	3.35242601662074	3.55546531428337	3.4519452804081	3.28221751594508	3.62493113201596	0.0913805917273933	0.878738174864865	0.972000507462599
Merged-chr15-62044896-4	chr15	62044386	62045386	+	884.6416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	5629.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	6.65197968689666	6.8699299240545	6.63725162696292	7.3762533882785	7.74378350192513	6.93110977907733	1.05112510146183	0.000503491029587345	0.0105501086854454
Merged-chr10-24869892-4	chr10	24869396	24870396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027347)	promoter-TSS (NM_027347)	-90.0	NM_001166416	70208.0	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	5.43108181496806	5.16412199490163	5.0470191946313	5.47773328255299	5.5149583320729	5.11341150040802	0.315255180204706	0.397107318688445	0.774010442104196
Merged-chr5-114769727-3	chr5	114769232	114770232	+	918.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019834, exon 2 of 19)	exon (NM_019834, exon 2 of 19)	3759.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	4.10391204396179	3.68843582996929	3.8848662279643	3.55007902281346	3.46222735477328	3.80641491948092	-0.997984710457969	0.0798576088447684	0.373680796128416
Merged-chr7-137405397-4	chr7	137404888	137405888	+	915.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029886, intron 1 of 3)	L1MEc|LINE|L1	5368.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	4.76870113656555	4.75916156561036	4.73834435902202	5.10282002399637	4.91439680217352	5.09512049713995	0.614815089507406	0.107963836343455	0.438859545406263
Merged-chr15-98508203-2	chr15	98507703	98508703	+	558.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	10729.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	2.7107736283261	2.73472060957659	2.87282999179731	2.78793579117897	2.85869669853617	2.82483230519134	0.282098110630963	0.692195784281116	0.918590542007936
Merged-chr8-108692432-4	chr8	108691940	108692940	+	840.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-22204.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.78186036304105	6.34836161890279	6.66450246041677	6.41058222925214	6.6159464389325	6.41120857148844	-0.193036819078051	0.498892659962271	0.83416518313324
Merged-chr1-34011509-2	chr1	34010991	34011991	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-334.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	5.87268345604947	5.84166061879456	5.76313850056075	5.80836762858196	5.59819315242743	5.79941090748375	-0.178133582002185	0.563648024515861	0.865992481769395
Merged-chr4-149701596-4	chr4	149701124	149702124	+	986.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	5.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	7.12392816990566	6.84119576939645	6.95758623276529	7.57614644715139	7.64150061163689	7.00160520639492	0.6971211372034	0.0129583886179147	0.120676172369272
Merged-chr14-31597658-4	chr14	31597160	31598160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20277.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.02975886719191	5.16750053776456	5.10064305180596	5.8671190979594	6.1252286881079	5.09124131810976	1.29312908264404	0.00166764614660155	0.0268397486588824
Merged-chr13-9472864-4	chr13	9472354	9473354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	196329.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.45855115940895	3.72091914105776	3.66627442121807	3.80185871180994	3.87716868940045	3.83964845022572	0.735583445548844	0.176093902031167	0.556287990375801
Merged-chr3-105893395-4	chr3	105892925	105893925	+	881.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10996.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	6.64371198561451	6.56083357953318	6.71708628908941	6.72144652295256	6.98400255558646	7.11656820051453	0.482345823570827	0.0666999851136182	0.337507032189311
Merged-chr13-23575748-4	chr13	23575240	23576240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-23.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	6.9122373743316	6.66531649328029	6.8680992865196	6.78375823826601	7.26017294030556	6.96869561807722	0.322407555859344	0.237041994632445	0.633451851153821
Merged-chr13-92030889-4	chr13	92030390	92031390	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42848.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	4.57035696811439	4.53476416148358	4.31312890689255	4.11225269109155	4.04925452803177	4.19531934552891	-1.00147225552938	0.0293922757882801	0.206124945957961
Merged-chr16-24629871-2	chr16	24629371	24630371	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-91984.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	7.90855063375995	7.98793301179172	7.57645071028545	7.79624129465998	7.96173534903066	7.46514980490194	-0.109914594540885	0.669639957091351	0.909715790834065
Merged-chr7-102338015-4	chr7	102337507	102338507	+	887.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	70183.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	5.73262242422229	5.80783655639551	5.77669941335989	6.26651346239255	6.41570056704225	5.83943949341409	0.758748570417889	0.0168896062360027	0.144242056418486
Merged-chr19-43674996-4	chr19	43674469	43675469	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	-88.0	NM_001356944	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	7.57439037794438	7.71551354991326	7.71893040671582	7.72893288487619	7.70999695857718	7.83379508971387	0.124272827140316	0.569336627277105	0.8688875602138
Merged-chr4-101356266-4	chr4	101355765	101356765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-17.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	8.63285054788162	8.50495152977588	8.23650432398495	8.55797107827474	8.34232090749171	8.39726525301323	-0.0534285512575618	0.811071578482268	0.955104401946399
Merged-chr19-5922083-1	chr19	5921583	5922583	+	548.0	f1_balb.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	2733.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	3.03740153869192	2.89772530602704	2.86353223986557	2.94110177731547	2.6970479551662	3.17050164256303	0.0374019525210565	0.959126392160023	0.990174309444982
Merged-chr13-114376718-4	chr13	114376224	114377224	+	868.8583369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010887, intron 1 of 4)	L1MD2|LINE|L1	11370.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	4.57290067122472	4.39499478913098	4.72674015643931	5.25192809924327	5.06672227266434	5.27232280110698	1.41968969178598	0.000354717006178152	0.0080008925589785
Merged-chr18-60746228-2	chr18	60745728	60746728	+	852.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	518.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	5.82127849779728	5.63534104388917	6.05587801683994	5.75962395593499	5.60662747759061	5.79898984760944	-0.216877075357317	0.501816575002302	0.836022696421896
Merged-chr9-9238501-3	chr9	9238000	9239000	+	947.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	513.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	4.98157476005695	4.98279036769751	4.88343410206999	5.09868130853469	5.02795450934217	5.05774829540429	0.228209218384352	0.534534649730854	0.853068627162717
Merged-chr2-160731341-4	chr2	160730904	160731904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021280)	promoter-TSS (NM_021280)	94.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	6.27312319991425	5.85620698932325	5.99714247552976	6.27753042524152	5.64673829300279	5.78500791226362	-0.212177583397367	0.542435052809264	0.857182335469627
Merged-chr15-82340365-2	chr15	82339865	82340865	+	646.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	-487.0	NM_001357717	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	2.83086060208107	2.83876850850529	3.08114554055974	2.6316607166287	2.64258766729591	2.68120153987213	-1.42682323358269	0.0584422108711712	0.312543189290341
Merged-chr4-48042047-2	chr4	48041547	48042547	+	995.916626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3258.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	4.57708509558478	4.63627295708705	4.52368822572095	4.94291674484736	4.83152552558217	5.04646092375773	0.810387451208412	0.0426910543612774	0.259060476319514
Merged-chr12-85487954-4	chr12	85487489	85488489	+	948.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14099.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.9259210763817	5.66300076592155	5.9078436963035	5.94244685209732	6.08997898057924	6.35791998010164	0.522308971874322	0.0947195142261577	0.410277008835509
Merged-chr18-54847113-4	chr18	54846631	54847631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	143049.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.2524417621689	7.21596648251622	7.04619449918466	7.2653412785559	7.33154516930967	7.33549783813317	0.194434133685074	0.404806924699863	0.779791650050306
Merged-chr4-139578338-1	chr4	139577838	139578838	+	665.0	f1_c57bl6.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	3618.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	2.72296826146184	2.53514304896752	2.66895387855762	3.3008557778683	2.91471849300183	3.06503516467742	2.42844090383348	0.00227490397951728	0.0340879183013999
Merged-chr9-119334504-4	chr9	119333995	119334995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5545.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	5.45035706670471	5.49339028061755	5.42551568963658	5.41767268486575	5.8445635441057	5.68619219062527	0.393379563723753	0.242628747298053	0.639785480506262
Merged-chr14-74847787-4	chr14	74847277	74848277	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 2 of 19)	ORR1D1|LTR|ERVL-MaLR	100100.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	5.3996437690379	5.40604394883109	5.42701086438711	5.29489760000177	5.26487954015617	5.51774266113328	-0.109719499447525	0.745745155361394	0.936251303305737
Merged-chr5-65832391-4	chr5	65831879	65832879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31190.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	6.42635085919567	6.48150003170205	6.26718108445562	6.31522136861514	6.64172101029092	6.19945131895809	0.0210181590859523	0.942549776656392	0.987202156853573
Merged-chr5-124022546-4	chr5	124022046	124023046	+	981.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9714.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	7.73796929825758	7.76410129050832	7.38813980206908	7.9351918054112	8.15788698480336	7.56457060185107	0.387060855873666	0.144772436104211	0.507621952799257
Merged-chr9-78588631-4	chr9	78588139	78589139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	-594.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	8.27753215212745	8.46821315879342	8.21021932674686	8.1656057484363	8.57692414141404	8.32278831617796	0.0621462217591321	0.787467712628449	0.94877064431094
Merged-chr14-45107242-4	chr14	45106742	45107742	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112183.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	4.72004973466728	4.70316519888094	4.87493200296051	5.13547798697524	5.24987786648662	5.27562375800075	0.995198434825752	0.00747407960960741	0.0819317459514774
Merged-chr11-98962067-2	chr11	98961567	98962567	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	1596.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	3.92284957644957	3.58299498043461	3.99905136457129	3.87414551792577	3.53357082756931	3.77779951245732	-0.357041243714151	0.52652742912795	0.849517069783573
Merged-chr12-55080362-6	chr12	55079829	55080829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028314)	promoter-TSS (NM_028314)	-167.0	NM_011899	24067.0	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	8.09677433349275	8.16337905285402	7.71801868609339	8.4889382384964	8.50730873533441	8.13941195982316	0.532481409583406	0.0301299659496036	0.209532319827381
Merged-chr8-105637253-1	chr8	105636753	105637753	+	872.5	f0_balb.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	97.0	NR_151743	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	7.83604896705091	7.85915453172764	7.82311573238968	7.93939054417464	7.86073142003321	8.12971067095989	0.194310814813887	0.372218719886272	0.756099728816208
Merged-chr7-45434686-4	chr7	45434162	45435162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011304)	promoter-TSS (NM_011304)	-177.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	5.76144645292827	5.54147715059908	5.70522090017991	5.94063618660973	5.76741656918365	5.57224870230365	0.190614670205564	0.554972272018191	0.863029749567153
Merged-chr19-41293282-2	chr19	41292782	41293782	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 12 of 16)	L2c|LINE|L2	-29278.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.74583349837381	2.66520778127783	2.90664387542755	2.54608888712582	2.4445345028236	3.24686931280014	0.123904209744734	0.885213739088981	0.973549591486895
Merged-chr15-76294307-2	chr15	76293807	76294807	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195537)	promoter-TSS (NM_001195537)	-127.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	5.15969497094686	5.46534309442904	5.34786821763163	5.17696737564348	4.95231340099109	5.32060228353822	-0.374403416631871	0.309011320991439	0.704802606494279
Merged-chr14-14603669-4	chr14	14603166	14604166	+	883.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99359.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	3.91291618859157	3.65551208957221	3.91985473382649	3.40646484596993	3.72126000790046	3.79568265680142	-0.598323147867134	0.293244569343234	0.690199330852636
Merged-chr2-117304505-2	chr2	117304005	117305005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38372.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.49769828502464	5.79191598841335	5.83232151632895	6.31685202342846	6.47125604293019	6.31179657703469	1.14231542773587	0.000142145036607426	0.0037982030205622
Merged-chr19-5649679-4	chr19	5649239	5650239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12249.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	7.96986942623521	7.84289781139688	7.77145124782096	7.67086693504432	7.97526226368733	7.71352051764453	-0.0959893107686069	0.676145118074827	0.912421384593547
Merged-chr12-51680593-2	chr12	51680093	51681093	+	761.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172098, intron 1 of 15)	B1F1|SINE|Alu	-10373.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	4.97892128636294	4.89725383951626	5.19365287606278	5.72555871973557	5.63332117877618	5.76571755151761	1.36032167474057	7.74007499955706e-05	0.00228462632338824
Merged-chr16-15888623-2	chr16	15888123	15889123	+	974.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146068)	TTS (NM_146068)	1337.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.82139302882544	6.76768813821145	6.25353273253655	6.43702580043977	6.66272532686616	6.79483363722367	0.462863995612945	0.190759498217389	0.577285852673513
Merged-chr11-120728697-2	chr11	120728197	120729197	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007621)	TTS (NM_007621)	-1413.0	NM_001347608	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	3.05543583759993	3.0886972024962	3.16070209430183	3.00804783989771	2.86150572744829	3.28637971963128	-0.20018080982906	0.768906124508551	0.942983923980385
Merged-chr17-81669392-6	chr17	81668847	81669847	+	986.138916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69040.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.99290073344069	6.19578364242388	6.36644298293083	6.14600620007572	6.06136286893922	5.81638572946318	-0.278296438294015	0.362321221912669	0.74782499303743
Merged-chr11-103025758-2	chr11	103025258	103026258	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-2785.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	6.21115213439633	6.15019133839135	6.02155247209993	6.04118342873382	5.96714028117998	6.059752116747	-0.19929848863216	0.486592669947473	0.827964820259562
Merged-chr19-24280420-4	chr19	24279886	24280886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008044, intron 1 of 4)	CpG	200.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	5.2342191255508	5.121706631842	5.13715758143276	5.12141810555979	4.8213728085935	4.36902814574929	-0.748713513434391	0.0872279186477242	0.391565637399646
Merged-chr14-27355255-4	chr14	27354739	27355739	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	L1MC4a|LINE|L1	-6150.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.37308457161218	6.07269615343759	6.12106479263223	6.46526666769446	6.16630861725337	6.2868278786701	0.183038206279705	0.532605260973188	0.851971173271146
Merged-chr12-3861421-3	chr12	3860880	3861880	+	791.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	864.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	5.18339471468221	5.10419127106049	5.39742186533975	5.42636409641206	5.23235532196103	4.99828741113252	0.0255503343552922	0.944950183870755	0.987875414328125
Merged-chr17-35779712-4	chr17	35779228	35780228	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	7278.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	4.46225406613233	3.62418697830253	3.96783518194057	4.72897640449495	4.69439810365417	4.39290337521277	1.39988728113612	0.0145863846930541	0.13004434774881
Merged-chr2-35696561-4	chr2	35696062	35697062	+	909.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290639)	promoter-TSS (NM_001290639)	-170.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.25490209829843	4.60013530226256	4.51478578776913	4.03606853443075	4.01185063828886	3.99412754822927	-1.24118607082588	0.00961882388834388	0.0978790258929859
Merged-chr1-132318665-4	chr1	132318167	132319167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	2542.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	6.36155017845143	6.12032160777447	6.28374739051022	6.18789735621155	6.16740923838209	6.06913505736525	-0.187094467582234	0.509154755822209	0.840256821151416
Merged-chr17-44076192-4	chr17	44075698	44076698	+	976.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-2604.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	4.37020201070979	4.11534804862617	4.34283315168465	5.43343559464758	5.66241543851749	5.51263697374858	2.89388560851296	4.64161688025132e-12	7.96329190457632e-10
Merged-chr1-161969140-4	chr1	161968638	161969638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204905)	promoter-TSS (NM_001204905)	10.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	6.93312246563341	6.87429922076618	6.6139984575842	6.70016458217652	6.37043059263088	6.41740723206645	-0.502260557736753	0.0684487737014627	0.34221507914146
Merged-chr2-45236358-4	chr2	45235852	45236852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118910.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	8.00444937502642	7.74001386961636	7.28262604899935	7.66321987273748	7.76181492577103	7.48862020292162	-0.104406633268293	0.702975455452259	0.922070010099175
Merged-chr4-19709161-4	chr4	19708646	19709646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276292)	promoter-TSS (NM_001276292)	-142.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	7.71284161135476	7.83202230887778	7.64517975504767	7.62714829795891	7.39235916927155	7.35448511237066	-0.392578935517102	0.0896068407462312	0.397759722849422
Merged-chr8-67813793-4	chr8	67813283	67814283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	4512.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.9159661159925	4.13591773726369	4.35456110360736	4.1283943143909	4.07084031050375	4.06804794085274	-0.140769206826616	0.775378409640607	0.9446501619605
Merged-chr11-94549676-2	chr11	94549176	94550176	+	686.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	-469.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	5.31559238184269	5.29104181768105	5.13988611643098	5.4639970823655	5.51859179424884	4.85377744015201	0.143025216345019	0.715585373276915	0.926402055104375
Merged-chr10-8776131-4	chr10	8775622	8776622	+	970.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	109948.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.43645597059283	5.28509874553039	5.53165547360929	4.95335964014623	5.11141472390041	5.03808946491621	-0.764789099264219	0.0326686977407757	0.220033754380319
Merged-chr7-98053879-2	chr7	98053379	98054379	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256082, exon 46 of 49)	exon (NM_001256082, exon 46 of 49)	55369.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	2.72227166677494	2.85510599738673	2.90888851513176	2.67119648427499	2.60358606781	2.86388524572739	-0.620653632779138	0.401715555629539	0.777753227258936
Merged-chr19-9912431-2	chr19	9911931	9912931	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12898.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	5.66947780000497	5.75997310946104	5.73231048720049	6.01395768575145	5.88176675181485	6.22071273455013	0.558024662433756	0.0696399942170123	0.34541038619511
Merged-chr6-97356992-2	chr6	97356492	97357492	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	102294.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	2.61007842483628	2.92449176969789	2.95652812590819	2.7134773443854	2.70951878542043	2.66410026288911	-0.73326628811836	0.332990495792047	0.723927708416112
Merged-chr11-78183562-4	chr11	78183060	78184060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	24.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	5.52908385528394	5.7245526366802	5.71781052928575	5.94873778708107	6.20427833304626	5.64144895296701	0.552722020040567	0.0963686066932948	0.413843880353823
Merged-chr1-52800513-4	chr1	52800008	52801008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17180.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	6.25501822526026	6.28128165033636	6.08420923388698	6.74038988259515	6.70324617322999	6.83290032358528	0.867921176916464	0.00117030699078526	0.0203508681482258
Merged-chr17-31057988-9	chr17	31057475	31058475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	CpG	281.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	8.51890965602985	8.55073189703637	8.2488805731637	8.21787285324108	8.32856860156505	7.66696583654965	-0.472287177999981	0.0720101572862188	0.35241860766214
Merged-chr2-5711705-3	chr2	5711221	5712221	+	727.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	B4A|SINE|B4	3041.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.06659420851111	5.10978484463761	5.10266174340975	5.0408206350031	5.00031947678918	4.79760783548451	-0.286917878308975	0.440492259775563	0.801865714660242
Merged-chr13-117034019-7	chr13	117033509	117034509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-8493.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	6.32673527280156	6.03701013309291	6.25555381061133	6.27969002188116	6.37298399523255	6.33517526227975	0.202191071783745	0.473018437377477	0.820601745007875
Merged-chr7-102229869-4	chr7	102229359	102230359	+	978.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	6831.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	5.468385364743	5.52238842543967	5.38331560845453	5.49607995956398	5.79174850197201	5.89945225019014	0.508899562330274	0.126001660619825	0.474770012084154
Merged-chr14-79558033-4	chr14	79557531	79558531	+	968.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-29629.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	6.52755307759433	6.65960967385757	6.585941964167	6.78410134417444	7.10245785799437	6.85194681744874	0.522835778151355	0.0454963063582515	0.26930436162134
Merged-chr18-62069026-4	chr18	62068522	62069522	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110959.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	5.46260081370847	5.4279249585746	5.5633737733014	5.31498661122771	5.19656290296377	5.33702741833058	-0.398403401931029	0.236166786113351	0.632555396218363
Merged-chr6-125449866-4	chr6	125449351	125450351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44909.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.91069955850469	4.59494583225106	4.49129513863252	4.9319134213634	5.14753918280322	4.60691364162987	0.540490116549988	0.218009872085634	0.612156710919465
Merged-chr3-133623443-8	chr3	133622907	133623907	+	991.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79017.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.4764493622072	4.29171515555791	4.4072087765293	4.47007897034486	4.07196614717516	4.51543167965646	-0.0938275531502631	0.841283641427329	0.962909549034125
Merged-chr18-60848991-4	chr18	60848473	60849473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198984)	promoter-TSS (NM_001198984)	-9.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	6.60200529231454	6.97996740363425	6.31691684014267	6.40431426139015	6.73722170974779	6.29290780346754	-0.270640346803253	0.394621908405363	0.772514857254462
Merged-chr2-124665093-2	chr2	124664593	124665593	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172537, exon 17 of 17)	exon (NM_172537, exon 17 of 17)	11512.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.05517908817165	3.34310317944328	3.79594492167989	3.63414695494128	3.10030197494573	3.67651908231466	0.225510575000995	0.751463378087448	0.937886504040509
Merged-chr15-91190883-2	chr15	91190383	91191383	+	835.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	1124.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.10184099276171	6.33200292307211	5.95656301357266	6.15474840504219	6.66111069117679	6.287487693712	0.411961524750017	0.190081667466863	0.576216758852106
Merged-chr12-79749359-2	chr12	79748859	79749859	+	678.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	175374.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.37052919319861	5.34932171712954	5.21448280736689	5.16725192893072	5.29031251947478	4.91411880441108	-0.345006910791034	0.344816284674409	0.733368210920794
Merged-chr8-75099951-4	chr8	75099468	75100468	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010442, exon 5 of 5)	exon (NM_010442, exon 5 of 5)	6350.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	3.94935043812969	3.96549262056317	4.15751154856451	3.92022907320948	3.71890355122962	4.30786810954253	-0.0852527840217242	0.873114842035651	0.970371929331986
Merged-chr11-85004342-2	chr11	85003842	85004842	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	ID_B1|SINE|B4	46588.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	4.49714283565406	4.16647121909414	4.34286789584465	4.40700327235013	4.37693108722531	4.65450383723539	0.344819685611729	0.448368132960214	0.807231443134637
Merged-chr6-87469527-2	chr6	87469027	87470027	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 6 of 10)	MTEb|LTR|ERVL-MaLR	26800.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	2.35092779499344	2.3779839491731	2.55329542781397	2.42027880040359	2.18156166442682	2.23859130531552	-0.952202183576724	0.271588673654645	1
Merged-chr7-5058047-1	chr7	5057547	5058547	+	627.0	f0_c57.idr	exon (NM_001290432, exon 4 of 6)	exon (NM_001290432, exon 4 of 6)	1321.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	3.2619527417121	3.42119324151735	3.43986171602788	3.46736084862899	3.0005427035109	3.56268618367476	-0.0520823408908654	0.937284142609869	0.986057836872162
Merged-chr7-43347911-2	chr7	43347411	43348411	+	727.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-3430.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	2.97560833849198	2.77811813985591	3.00434472760225	2.60483213129753	2.63756784084502	2.90335535698275	-1.06786383144954	0.156133665156688	0.526443391294178
Merged-chr9-94431651-2	chr9	94431151	94432151	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	106430.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	4.8494827380971	4.56372881310115	4.65258629860376	4.69773305151617	4.93305511976521	4.83645669699612	0.305805756375973	0.452776637690281	0.809457484278845
Merged-chr7-141435296-4	chr7	141434799	141435799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177576)	promoter-TSS (NM_001177576)	76.0	NM_001360723	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	5.74505964536912	5.80421429253149	5.90092057025888	6.095357839133	6.185478104908	5.75765939786237	0.394747732013182	0.204452091984946	0.594962496294183
Merged-chr4-3627196-4	chr4	3626674	3627674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-29332.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	7.75911009120867	7.57907881564987	7.5137361639084	7.66530102040143	7.75021630867425	7.29361564641558	-0.0444247087719676	0.858133894665189	0.966834185575413
Merged-chr5-96210100-4	chr5	96209603	96210603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-12.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	6.60232935629818	6.81073157946531	6.63798055869305	6.76011116498914	6.7952347250071	6.66365020854345	0.0858684845177293	0.737665236653948	0.933857456015058
Merged-chr2-168227889-2	chr2	168227389	168228389	+	853.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	2490.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	3.42795347446394	3.33731191561329	3.20343738340039	3.32905355079908	2.9156607372044	3.44500640373987	-0.332533287303968	0.625809367512162	0.892672753660696
Merged-chr3-60501849-4	chr3	60501357	60502357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	678.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.50857811006911	7.42577279197427	7.58629713652822	7.61659995768205	7.37780850054602	7.633867948065	0.0545364343788151	0.81373623099448	0.955940138311315
Merged-chr12-100440282-3	chr12	100439771	100440771	+	952.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	80551.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	6.02739703788225	5.77948559864744	5.73521048972291	5.09626376885409	5.13896567096732	5.64228050938611	-1.05100089638692	0.00342058320538091	0.0464306504654705
Merged-chr7-16272950-4	chr7	16272453	16273453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001136270, exon 1 of 1)	exon (NM_001136270, exon 1 of 1)	739.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	5.09674884768707	5.02063375812102	5.20345982504199	5.4535148306811	4.86401450856252	5.20293874504485	0.17861038835179	0.64826885634654	0.901726822360623
Merged-chr11-45884214-4	chr11	45883701	45884701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 2 of 11)	intron (NM_001045520, intron 2 of 11)	32237.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	3.65225134159661	3.74572073146748	3.72575985657632	3.72498993495619	3.57619325606877	3.58275953515792	-0.26933865236437	0.620882659580996	0.890378028340753
Merged-chr2-167271314-4	chr2	167270824	167271824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30787.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	5.4206529628976	5.22857121093095	5.32974889575052	5.67701810349596	5.59524750383056	5.3293372821605	0.428810790813232	0.209945567191426	0.601865659082314
Merged-chr12-8674583-4	chr12	8674127	8675127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030723)	promoter-TSS (NM_030723)	-54.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	7.7639087042867	7.76119798964992	7.86452357160608	7.96154844229432	7.66452325359454	7.7107752110227	-0.0133412477131849	0.952876789724786	0.989332436906667
Merged-chr10-123209709-2	chr10	123209199	123210199	+	845.333374	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-12680.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	2.03665127598802	2.00167068478859	2.16908308033922	1.89645486265381	1.72316621879104	2.0480979329729	-1.52887811402259	0.149930712053087	1
Merged-chr5-123058001-4	chr5	123057521	123058521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11005.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	6.88984986304761	7.16173772745269	6.82320461373408	6.85349039901554	7.2125051527916	6.73869797192238	-0.0146288399425616	0.958174466295579	0.990000537228272
Merged-chr4-89212419-3	chr4	89211923	89212923	+	846.194458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEb|LTR|ERVL-MaLR	69769.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	2.8145047421478	2.67690542278425	2.83880958663741	2.55308464340358	2.50919407031704	2.73151257116138	-1.01651926914282	0.184723722109303	0.568561495497185
Merged-chr7-114889856-2	chr7	114889356	114890356	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-58794.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	3.65331322376227	3.67983170866757	4.13890321226882	3.32238182937457	3.32367448532495	3.6656598996891	-1.39256619337839	0.023149104879205	0.177896634698936
Merged-chr12-101075788-2	chr12	101075288	101076288	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160214, intron 1 of 14)	B1_Mus1|SINE|Alu	-6663.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	5.13029033716233	5.36714417836051	5.60484903095531	5.55801545389056	6.01835357965667	5.71959940002359	0.781104251738198	0.0285269750885118	0.202290143443403
Merged-chr13-111797208-4	chr13	111796698	111797698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11795.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.42319650918945	7.2964939911402	7.29298051530854	7.53113293734144	7.4928473700282	7.24409251333345	0.139646154238568	0.553422001953164	0.862251545920931
Merged-chr6-116677707-2	chr6	116677207	116678207	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3871.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	4.1917044917063	3.81856549292044	4.15852181975219	4.12091285667447	4.33420523568001	4.59542485003248	0.808295507166864	0.10810838568196	0.43923254667112
Merged-chr7-106236873-4	chr7	106236394	106237394	+	963.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21554.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	5.69834780876424	6.30484937501247	5.82023114755843	6.80149783795916	7.39538399500236	6.67518764031485	1.64732619474633	2.87392711242807e-06	0.000136578822121839
Merged-chr11-115171457-2	chr11	115170957	115171957	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	8116.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	2.63481222718621	2.43085825902783	2.68770649525809	2.51393389565128	2.56447690138692	2.63828751379703	-0.0813655965938968	0.916858078122571	1
Merged-chr1-171233538-4	chr1	171233037	171234037	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	812.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	7.65394984952114	7.47969191886076	7.50951971401203	8.05927222514149	8.24461128070955	7.63662740427723	0.66406517301716	0.00909133432358201	0.0942291662178141
Merged-chr10-98895185-2	chr10	98894685	98895685	+	656.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-19457.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.80228415152027	7.83319266843	7.52324768770763	7.45886354359685	7.87341326509859	7.42074223825609	-0.17508931529267	0.495510476964587	0.832500902975543
Merged-chr16-11132994-2	chr16	11132494	11133494	+	652.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029582, intron 1 of 11)	intron (NM_029582, intron 1 of 11)	1538.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	3.48214091685667	3.58138484475101	3.74291272263432	3.50557486287421	3.77434788568232	3.65985418932823	0.190046007456741	0.736450543074508	0.933157348908809
Merged-chr12-84219426-4	chr12	84218923	84219923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-542.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	7.6199156151256	7.50378599776664	7.08140016621385	6.91726006509377	6.90744181933733	6.91490290500825	-0.778749430055216	0.00285596172635135	0.0405457879758135
Merged-chr7-126695863-4	chr7	126695366	126696366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	-83.0	NR_033446	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	5.59378071562454	5.29214356342373	5.75284193825757	5.39800500973349	5.4250508109615	5.61234958810078	-0.141864931942316	0.682886023972282	0.91523316791368
Merged-chr1-85990161-2	chr1	85989661	85990661	+	773.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-29106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	3.70843718616879	4.0802451478124	3.68834074497986	3.73047942846383	4.06675603879568	3.70449170326893	0.0258078543075721	0.963716003861977	0.991124145615921
Merged-chr2-181533362-2	chr2	181532862	181533862	+	597.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MTE2a|LTR|ERVL-MaLR	12877.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	4.38647238201228	4.28094173660279	4.49472964117647	4.64495778742198	4.73188896720153	4.9010066251619	0.917141261849344	0.0302391253982158	0.210010612314059
Merged-chr18-67406582-4	chr18	67406078	67407078	+	967.654785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027130, intron 16 of 16)	MIR|SINE|MIR	15847.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	4.82790819260269	4.51933976282066	4.72223309630885	5.24467602377785	5.24252734974043	5.08931496573537	1.10051892383434	0.0044847079084657	0.0567462858344912
Merged-chr6-128764273-4	chr6	128763768	128764768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24373.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	4.83324811538338	4.83824022401366	4.69418938352248	4.67161055131668	4.8644328669854	4.6369075887731	-0.132587269573143	0.741583826035856	0.934878295206222
Merged-chr11-98360729-2	chr11	98360229	98361229	+	840.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	2361.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	6.8006981179834	6.86134762330244	6.87811652988511	6.98861344337187	7.30477778166533	6.78428898913448	0.323356498771939	0.227954181455177	0.622981752321771
Merged-chr1-177191808-4	chr1	177191295	177192295	+	800.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	56972.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.328768266473	4.58393825883886	4.31310757222239	4.53280710650543	4.2760911493894	4.55373725410904	0.0799227183363602	0.859531729032742	0.967372405020639
Merged-chr9-119936792-3	chr9	119936345	119937345	+	913.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028735)	promoter-TSS (NM_028735)	713.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	5.70830114390274	5.98799509564596	6.03724189969566	5.84486977925074	5.69858923453392	5.6868779297619	-0.300735115562163	0.338481767906946	0.728496183337242
Merged-chr2-25022286-4	chr2	25021793	25022793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-32086.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	4.9338165245872	4.84673211462391	4.71331634559374	4.8311776431959	5.01668422661177	4.78025531793197	0.107451074058394	0.784656347350336	0.947710697182936
Merged-chr15-95793966-4	chr15	95793463	95794463	+	982.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3120.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	7.56029999399962	7.59568026515946	7.43506208803319	7.52983344432453	7.80134279195696	7.32433145129214	0.061336730784751	0.804076012401389	0.953557286986578
Merged-chr10-127625369-2	chr10	127624869	127625869	+	584.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4221.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.023307940117	2.70852254015927	2.91355013520113	2.73294884272088	2.77351765939051	2.92668828400386	-0.388469432684578	0.593207315099261	0.878425958157711
Merged-chr12-69356712-3	chr12	69356207	69357207	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025441, intron 1 of 32)	MIRb|SINE|MIR	469.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.89587967555536	5.94684639219241	5.69163714732555	5.99800187556395	6.07931307041058	5.83507011441659	0.21871601017637	0.47380086980728	0.821131043651886
Merged-chr14-46881112-4	chr14	46880614	46881614	+	944.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1851.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	4.74126881465141	4.32667589785388	4.28567617399391	4.88376785087851	4.56827323615323	4.89445343172897	0.731599102921311	0.108574724276678	0.440273571814211
Merged-chr9-77912551-2	chr9	77912053	77913053	+	629.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4812.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.74711979850732	6.76777162482185	6.71610882737148	6.532473036209	6.70823349940818	6.77472898007101	-0.11270488604885	0.658581331829218	0.905014667687917
Merged-chr9-20607430-4	chr9	20606934	20607934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033729)	promoter-TSS (NR_033729)	-41.0	NR_033729	66662.0	Mm.477847	NM_175110	ENSMUSG00000062470	Fbxl12os	5730577I03Rik	F-box and leucine-rich repeat protein 12, opposite strand	pseudo	7.49862904213673	7.9928875252264	7.88896163766139	7.7179250347393	7.95908361593085	7.84216159770561	0.0499632762846188	0.840739399334352	0.962819298477451
Merged-chr10-12959234-2	chr10	12958734	12959734	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	5025.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	4.72565098151588	4.61271787657073	4.99419929663457	4.74451047855729	5.06850189737531	5.18549179137153	0.516158216452684	0.207520657881267	0.59831527723439
Merged-chr6-8744557-3	chr6	8744048	8745048	+	959.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 3 of 11)	intron (NM_001252266, intron 3 of 11)	13910.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	4.00191072816618	4.25839209730633	3.9001717711243	3.81900291146045	3.86936371794155	3.57861689319917	-0.91824200187989	0.0928826078601799	0.406104568064203
Merged-chr5-35235615-3	chr5	35235115	35236115	+	686.266663	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42951.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	2.937039120523	2.96837888056056	2.87223410207343	3.42278416231082	3.46806110452592	3.5400239889113	2.45019699037043	0.000468543490358017	0.00999399301351188
Merged-chr13-67683574-4	chr13	67683045	67684045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001187)	promoter-TSS (NM_001001187)	-33.0	NM_001001187	408068.0	Mm.435551	NM_175676	ENSMUSG00000048280	Zfp738	3830402I07Rik|6720487G11Rik	zinc finger protein 738	protein-coding	5.74212473842106	6.19958440297907	5.92334280111555	6.70681807646979	6.52321740868332	5.64616101123306	0.677772226196888	0.0785619891192622	0.370220648504025
Merged-chr19-6117548-2	chr19	6117048	6118048	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133678, intron 1 of 1)	intron (NM_133678, intron 1 of 1)	1038.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	4.92185842244636	4.8805319970164	4.99497824903648	4.79976992387404	4.62060011843724	5.1240090760503	-0.178485379034486	0.659005311010222	0.905178188485902
Merged-chr12-88408416-3	chr12	88407910	88408910	+	967.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361601, intron 3 of 8)	BC1_Mm|scRNA|scRNA	-31087.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	2.86991448674279	2.95138783563407	2.92205579069104	2.90677970011574	3.20435869394055	3.17100208719113	0.862768241479916	0.208699483647482	0.599699554405517
Merged-chr16-90282355-2	chr16	90281851	90282851	+	641.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	2135.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.19646549100511	5.0744504621309	5.04748424372212	5.24329021778021	5.33025171372154	5.07687888518967	0.244783198165979	0.496138461866141	0.832884389427821
Merged-chr8-46138358-4	chr8	46137773	46138773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14127.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	6.83810107904384	6.85937911965392	6.86186172822143	7.2627565795744	7.14963705987843	7.08571960538926	0.483520149731133	0.0430668165811038	0.260283925357336
Merged-chr7-127393744-4	chr7	127393259	127394259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198011)	promoter-TSS (NM_198011)	-138.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	6.98133078384906	7.13517101403318	7.19515545826647	7.19433893912242	7.4722257841614	6.82707759219421	0.150920686255163	0.585830427057183	0.875131338300747
Merged-chr1-172081984-2	chr1	172081484	172082484	+	830.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009938)	promoter-TSS (NM_009938)	-545.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	7.61286303544296	7.73320081647353	7.27558073032803	7.4890005501975	7.82874707758911	7.45809986602409	0.0691758277392673	0.79003707770307	0.949368241827272
Merged-chr5-64291076-3	chr5	64290581	64291581	+	862.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	L1MB8|LINE|L1	60724.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.89952607336657	3.9873309935778	3.86752475835815	3.99102126612889	3.93090417699963	4.34528971388433	0.501410531007856	0.327197652524719	0.719396012109034
Merged-chr5-134688827-4	chr5	134688332	134689332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010717)	promoter-TSS (NM_010717)	-242.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	5.90453069081412	5.333271187791	5.9085872841645	6.02029024919968	5.89928119298476	5.92295744253665	0.376547648172506	0.270378297615169	0.667299602638099
Merged-chr14-20294179-2	chr14	20293679	20294679	+	899.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-511.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	3.88410742791684	3.9089716163459	3.57992603467318	3.89018410875723	3.59425808334432	3.7087636896855	-0.235200576433389	0.672454044314083	0.910850661228817
Merged-chr10-77963408-2	chr10	77962910	77963910	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	B2_Mm2|SINE|B2	6462.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.79375201265075	7.6793614465623	7.64047169000786	7.99652604504275	8.35587075759626	7.52566687204089	0.438825067660798	0.11449885363321	0.452019766243401
Merged-chr1-167331326-4	chr1	167330832	167331832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-18659.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	8.0964101077824	8.25931246047613	7.71791085159559	8.1321880932775	8.28419402350525	7.75570349117248	0.0454726310614434	0.864117340879461	0.968269312109804
Merged-chr2-127832331-4	chr2	127831840	127832840	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-481.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	5.17836953050997	5.01264768781062	5.09477917078221	5.5073755976234	5.18130987863006	5.12486220520273	0.384394913423519	0.29574098415124	0.692640185104654
Merged-chr2-170159071-6	chr2	170158483	170159483	+	937.7222289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	-16308.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.93690013523076	5.70326998304918	6.07294075511552	6.3466776941122	6.46106714139499	6.31854119876047	0.811394584880799	0.00559638514852967	0.066371867562564
Merged-chr10-127737183-4	chr10	127736678	127737678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2360.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	7.24396721893287	7.23686368425671	6.9212833424498	7.00523147515007	7.2645829260323	7.10333038636014	-0.0267205285188426	0.916044859055895	0.981201223155309
Merged-chr7-46832107-2	chr7	46831607	46832607	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13697.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	6.57357725790366	6.50448668270472	6.60664988493076	6.6385307323546	6.70030926736436	6.52777677059342	0.112728994188302	0.662231881778258	0.90668833008286
Merged-chr8-66486574-4	chr8	66486057	66487057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025465)	promoter-TSS (NM_025465)	-27.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	5.0310553905795	4.85300598776989	4.85509716734716	5.05949121126437	4.88886112479422	4.67803706235649	-0.0593879249288131	0.880528838593898	0.972540920690587
Merged-chr16-30062131-2	chr16	30061631	30062631	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR28B|LTR|ERV1	-3226.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	2.80528739277335	2.66356015089166	2.99739574323188	3.05839135751763	2.84781892145117	2.89126081458019	0.551048096511118	0.445533309399617	0.805194667777499
Merged-chr4-135070005-4	chr4	135069510	135070510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50635.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	3.05436147743625	3.03007370507252	3.18052020809889	3.21814607356931	2.8336921746717	2.89151618023232	-0.427769038515397	0.540543030073361	0.85637977208932
Merged-chr4-101692996-4	chr4	101692505	101693505	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24402.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	5.41939313298966	5.31519101083624	5.53948847166909	5.0858621791191	4.85178495058737	5.22510860392854	-0.760108595070029	0.0370186104480937	0.237260170074307
Merged-chr15-98830885-4	chr15	98830432	98831432	+	885.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001033276)	TTS (NM_001033276)	576.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	7.92014334041306	8.06138481002324	8.09160691594026	7.79730743417061	8.12604407112413	7.93720529773525	-0.0850092004104008	0.705560338362156	0.922833138890237
Merged-chr17-6654311-2	chr17	6653811	6654811	+	872.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166630, intron 1 of 4).2	intron (NM_001166630, intron 1 of 4).2	1520.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	4.36860970027049	4.50082527968083	4.34732567378204	4.9837004964175	5.09877066023367	4.98901911630015	1.43613447213115	0.000437524496413483	0.00946581859011262
Merged-chr12-111930537-4	chr12	111930066	111931066	+	990.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13916.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	5.175097953593	4.9125658648419	5.4444000217338	5.04482201287655	5.15951505453821	5.50619452626574	0.118742287668122	0.762648143527588	0.94165939644819
Merged-chr10-118096993-2	chr10	118096493	118097493	+	570.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-44794.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.02705709512606	8.09254488949547	8.16789132044597	8.09767763413449	8.22655456916484	7.92877863361228	0.00180673042191088	0.993375782126053	0.998651348330892
Merged-chr16-57546567-4	chr16	57546069	57547069	+	972.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-2673.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.38285527022933	7.48226926371033	7.49290593421762	7.26319971180121	7.49751875131509	7.19530582924704	-0.174468191580075	0.462370120302749	0.815190019496792
Merged-chr6-116014770-2	chr6	116014270	116015270	+	815.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19765.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	4.69694274628818	4.75602637309149	4.65533658916481	4.59826566331594	4.43779274860422	4.64153321438689	-0.365640202562432	0.37445770645299	0.758087520776938
Merged-chr17-17398855-4	chr17	17398354	17399354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3832.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	5.35770871339969	5.24314526597901	4.97173198090786	4.93648719719216	5.04812515725716	5.00040009794842	-0.446493122793354	0.231947553870643	0.628108571043983
Merged-chr1-74433878-2	chr1	74433376	74434376	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009509, intron 19 of 19)	B1_Mus1|SINE|Alu	24492.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	3.88252564075429	3.80934312593889	4.12686798997172	3.81342699157653	3.65466745486756	4.10698884060175	-0.242354727355193	0.653568447468853	0.903427295126087
Merged-chr14-33243498-4	chr14	33242994	33243994	+	906.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	26671.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	3.25844874280721	3.01844433544781	3.16762053588257	2.77039239579145	2.95536773014279	2.94537316672933	-1.20382598373264	0.0873143186003472	0.39180552349122
Merged-chr10-29313429-4	chr10	29312916	29313916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025855)	promoter-TSS (NM_025855)	-84.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	6.90011428244616	7.01113203653398	6.76118912280672	6.89030929517817	6.89258538680485	6.48825536652471	-0.183351291772489	0.497864804972198	0.833817084327451
Merged-chr4-32363701-4	chr4	32363167	32364167	+	963.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53768.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	5.59035089560814	5.39896838689964	5.02738924558885	4.09702498680607	3.61194929608061	4.12861123218107	-3.87691617966895	1.61219088568281e-12	2.98768773309343e-10
Merged-chr11-116140207-2	chr11	116139707	116140707	+	771.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1339.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	3.53441619557898	3.59423089655841	3.49628242589172	3.75709560541631	3.6132800284035	3.45293049192137	0.257829784683419	0.650453468720359	0.902613484298836
Merged-chr1-43827923-4	chr1	43827421	43828421	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-213.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	6.45292767141564	6.6930611789042	6.51131046649587	6.49147311116152	6.2718566493063	6.46343363922517	-0.247736179595219	0.36435074131625	0.749738197211813
Merged-chr6-97319430-2	chr6	97318872	97319872	+	991.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 12 of 23)	intron (NM_145148, intron 12 of 23)	-66592.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.69653875090661	2.90523030549309	2.93366571014143	2.84678077315748	2.95960222991978	2.886064490484	0.261752018317764	0.712229872834662	0.924990607920001
Merged-chr8-70834284-2	chr8	70833784	70834784	+	764.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027560)	TTS (NM_027560)	5436.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	6.35443224501811	6.31009268143367	6.52397230481303	5.85678442510214	5.84844695046484	5.82643044119429	-0.934957424791285	0.00113919349629788	0.0199431963896389
Merged-chr2-144047108-4	chr2	144046608	144047608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	14006.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	4.85784511930515	4.88555130895301	5.01702516163751	4.74012643003287	5.02313773959752	5.04733558520487	0.0606786080728971	0.875300069332482	0.970953455305683
Merged-chr18-6773458-4	chr18	6772972	6773972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	8305.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	3.59349389038514	3.28948206109286	3.75427646725719	3.88575492387288	3.881228013228	3.82421946638972	1.05951063080248	0.0648319264746259	0.331889684883762
Merged-chr9-118619997-2	chr9	118619497	118620497	+	931.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	B4A|SINE|B4	13288.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.29534311810834	5.22839196230085	5.40409741544826	4.93032536895097	4.73875630847681	4.62184742941565	-1.13896194435993	0.0029403705391466	0.0414901746673091
Merged-chr11-4987444-2	chr11	4986944	4987944	+	932.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	620.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	6.64158180812914	7.05530228819858	6.67916300073722	6.39633336502609	6.2709026030859	6.16909992193907	-0.844153963888364	0.00310847164208891	0.0432826821674741
Merged-chr13-41491868-2	chr13	41491368	41492368	+	660.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4508.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.5614345210416	5.9673591298081	5.76670127693626	5.48006484261004	5.87400797540501	5.46342046360976	-0.262424226123713	0.452515475483419	0.809456767794566
Merged-chr9-118150158-4	chr9	118149658	118150658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026442)	promoter-TSS (NM_026442)	38.0	NM_026442	67899.0	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	6.18545476284507	6.55345816471675	6.16527469294429	6.22168336777166	6.37716046615812	5.99413607456087	-0.171989825915824	0.575014100301019	0.87094931637326
Merged-chr18-69345944-4	chr18	69345358	69346358	+	863.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361126)	promoter-TSS (NM_001361126)	137.0	NM_001361127	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.95168539978864	5.75247207447401	5.89886638916716	6.63816983816803	6.44582641820306	6.05865124421545	0.918742888407628	0.00309055790585844	0.0430608074733204
Merged-chr6-17800936-4	chr6	17800436	17801436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51766.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.0145468846751	5.28029081468686	5.08677614879153	5.20608299616979	5.34298905149524	5.08091957312112	0.17889300528603	0.624828447940804	0.892226791537215
Merged-chr4-139201050-2	chr4	139200544	139201544	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	6933.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.38108055429246	6.44574018723827	6.71816400821394	6.6939937669266	6.72010773628978	6.84984738061034	0.380624856042808	0.153950293043928	0.523087753015605
Merged-chr13-23718075-4	chr13	23717575	23718575	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7221.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	6.54682766379385	6.31976434458368	6.17567355781194	6.43578026560268	6.64068059551248	6.42059739440246	0.234481917303181	0.408291024497002	0.781982251625038
Merged-chr13-24805257-2	chr13	24804757	24805757	+	631.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 2 of 4)	intron (NM_024473, intron 2 of 4)	3600.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	5.51948894163587	5.49283957875873	5.45869175953182	6.2713257311875	6.34202435626984	5.38989278661381	1.0512446261641	0.00576390157500556	0.0677213671636631
Merged-chr8-14883716-3	chr8	14883233	14884233	+	815.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4803.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.77619259097413	2.81947504969332	2.85576987973232	3.50309091644973	3.35275893390268	3.24663058390362	2.73793174481128	0.000208846816176796	0.00518892979409938
Merged-chr3-88144111-3	chr3	88143582	88144582	+	762.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	1710.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	5.64887481899895	5.46243339842499	5.5882851673827	5.64668879502838	5.32030453619598	5.53907950310387	-0.12339100139571	0.712848231748803	0.92531822516521
Merged-chr7-73523611-2	chr7	73523111	73524111	+	632.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 2 of 38)	(GGGA)n|Simple_repeat|Simple_repeat	18135.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	4.7474436592023	5.07976568603367	5.09021754994825	4.69156265701335	4.84894843774279	4.88038524195715	-0.378344892296965	0.341909919294551	0.731127687208599
Merged-chr2-45088781-2	chr2	45088281	45089281	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	21496.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.65111708572811	7.62760744515536	7.58389365442023	7.4913436799132	7.6481006052368	7.43884158714316	-0.127335740171303	0.569203567510742	0.8688875602138
Merged-chr4-83417665-4	chr4	83417158	83418158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152448)	promoter-TSS (NR_152448)	-66.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	5.48194458596295	5.47302094321693	5.65262877240679	5.65031400793245	5.38274217255981	5.40297417248882	-0.0905116986698812	0.786555352289664	0.948530822116986
Merged-chr6-72386823-2	chr6	72386323	72387323	+	550.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016794, intron 2 of 2)	ID_B1|SINE|B4	3844.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	3.23677806671457	3.12580848897418	3.17230229658388	3.1618480480176	3.03670982896442	3.24396398451475	-0.149831195562845	0.814683290544339	0.956369939298364
Merged-chr7-43445133-2	chr7	43444633	43445633	+	870.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	1061.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	3.90497785105544	3.70889510399841	3.92077996547631	4.13137385573229	3.84862181636641	4.08507804403616	0.542437189761049	0.292974103332545	0.690053425164737
Merged-chr3-142578687-2	chr3	142578187	142579187	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16160.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	4.45907762667349	4.66534556711209	4.63324519001427	4.66858007460984	4.78922888253374	4.73872867377184	0.349752009461661	0.392186808470107	0.770943461123581
Merged-chr7-122206332-4	chr7	122205839	122206839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13157.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	6.21077596693739	5.89674014201471	6.59791591026091	6.34635871050925	5.97774426245327	6.31666495558065	-0.0638981416034433	0.848141549947501	0.964318271116593
Merged-chr13-48871410-4	chr13	48871083	48872083	+	762.525024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011078)	promoter-TSS (NM_011078)	-698.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	6.65846104499677	6.87796111303296	6.5381835127473	6.94495795118636	6.43986285756968	6.59764349076893	-0.044548662000873	0.878055579056892	0.971816559882595
Merged-chr18-26932540-2	chr18	26932095	26933095	+	697.75	f0_balb.idr|f1_balb.idr	Intergenic	RLTR45|LTR|ERVK	-1178438.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.12525069262254	2.98567017282967	3.25603178040812	3.09329392657758	3.15347479526069	3.15869510602236	0.0623751797600711	0.923420409587733	0.982699256056545
Merged-chr10-36970941-3	chr10	36970414	36971414	+	879.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3630.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	3.92483904314694	4.009494613214	3.86436545824598	3.70906086957415	3.74011979386882	3.88370540195551	-0.518236455711383	0.315917954553516	0.710133165572133
Merged-chr7-126779148-2	chr7	126778648	126779648	+	762.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025347, intron 4 of 4)	intron (NM_025347, intron 4 of 4)	2173.0	NM_025347	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	3.54772234410142	3.12133632047459	3.5295468130546	3.30408599029741	3.39717300674131	3.54768011523036	0.0201980376969582	0.974446696427919	0.994276686350905
Merged-chr13-119805856-4	chr13	119805348	119806348	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-14726.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	2.91497650073124	2.86002834364512	3.02392833926987	2.57178113281921	2.54507330053446	2.7419281674301	-1.76868552484578	0.0222855124704943	0.173431521306327
Merged-chr13-67609238-3	chr13	67608763	67609763	+	810.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163246, intron 1 of 3)	intron (NM_001163246, intron 1 of 3)	444.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	4.58628525769354	4.97811772994819	4.61408874686887	6.64324116686431	6.6874899074285	5.92850567941365	3.26033176620354	1.06298306322896e-14	2.79900932674543e-12
Merged-chr10-127615806-3	chr10	127615259	127616259	+	834.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5389.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.5737851664911	5.77545523317019	6.31820162913122	5.96794683016159	5.71518809338545	5.86786019529822	-0.114003949003268	0.747976502085621	0.936880860325556
Merged-chr4-132921413-2	chr4	132920878	132921878	+	685.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_145553, intron 1 of 8)	MT2B|LTR|ERVL	1173.0	NM_145553	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	3.52285337424477	3.32878659261808	3.55746383140245	3.72836261796524	3.31040507431325	3.22345536921717	-0.10448295592058	0.868714620612709	0.969708434868159
Merged-chr2-160020592-2	chr2	160020092	160021092	+	963.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	3939.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.58770681703535	5.3580471931011	5.94485555908716	5.53313799472099	5.64246796929509	5.72634088719716	-0.00994279930324619	0.977215595675769	0.994771164142869
Merged-chr10-51521677-4	chr10	51521190	51522190	+	803.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	30792.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.23026063316504	4.08239537026506	4.38993752052915	3.94667624802633	3.81042232675055	4.49420090468605	-0.355962812378006	0.504642546841909	0.837806481766929
Merged-chr1-181247350-4	chr1	181246850	181247850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35372.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	6.19087858078229	6.24506148537966	6.48813552530949	6.28768048046995	6.64444582161943	6.44111388232553	0.273425852334375	0.341433878045554	0.730861271883589
Merged-chr14-31482565-4	chr14	31482056	31483056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359849, intron 4 of 4)	intron (NM_001359849, intron 4 of 4)	12202.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	6.14681822553027	6.08955589019727	6.20458306533487	5.97354157665351	5.81002452257855	5.88752042156492	-0.442643726632285	0.127292023441768	0.476932397628901
Merged-chr9-114753941-2	chr9	114753441	114754441	+	623.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	22738.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	5.18058112341196	4.76946049614276	4.95291754422689	5.12069568124741	5.15515396405242	5.59071905484442	0.65320368025789	0.100845345066643	0.423513683621661
Merged-chr1-74245044-4	chr1	74244485	74245485	+	714.575012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 2 of 10)	B3A|SINE|B2	8468.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	5.22520895657752	5.11780797721275	5.42821059365598	5.55284446329037	5.50741749010895	5.82519479538494	0.723257567251414	0.0368667554876459	0.236628823853337
Merged-chr12-87389399-2	chr12	87388899	87389899	+	615.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1044.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	4.50061599093875	4.59901059370661	4.45654950950258	4.60761584634093	4.67103441614564	4.24130110096659	0.0231141987972892	0.958606582983349	0.99015359851262
Merged-chr1-120451725-2	chr1	120451277	120452277	+	760.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	53247.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.19145254804429	3.38387688097705	3.45551681485042	3.60636137448843	3.28537094902063	3.77791486502601	0.815608796872901	0.19065895971703	0.577134837486971
Merged-chr11-74995084-4	chr11	74994601	74995601	+	825.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	69229.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.87197530752747	7.10466725593771	6.9020493632865	6.82540413939276	7.41089973773411	6.88691861102889	0.175283674138592	0.54193244567708	0.857018905554292
Merged-chr13-43480411-3	chr13	43479890	43480890	+	905.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	583.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	6.16866367951644	6.26823409266354	6.23942804420681	6.52631671763483	6.5041817786633	6.23709497328645	0.349041274317342	0.208421130415632	0.599337828187015
Merged-chr17-73935448-4	chr17	73934946	73935946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 5 of 35)	URR1A|DNA|hAT-Charlie	14750.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.19122802457655	7.33277520025541	6.89056838551281	6.98044241950705	7.19687738875024	6.45849675870629	-0.346079210262946	0.258093645519423	0.65554518843855
Merged-chr2-170153819-4	chr2	170153326	170154326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11151.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.3212145408398	7.40668717655188	7.41630940584971	7.50183630411008	7.96598285712072	7.6781044142182	0.51765398482538	0.0345523224264898	0.227833397611805
Merged-chr12-65036397-4	chr12	65035936	65036936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_177806, exon 1 of 14)	5' UTR (NM_177806, exon 1 of 14)	102.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	7.99889327077627	8.1414239478836	7.94351757883032	8.05861493759667	7.72596663393699	7.78802014371903	-0.238566350641068	0.296778931255718	0.693409185183101
Merged-chr7-126791957-3	chr7	126791457	126792457	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019674, intron 2 of 8)	CpG	407.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	8.17281902457659	8.50998005814204	8.12499706512252	8.13709196466841	8.23485164476861	8.34050532517663	-0.0666999512805873	0.770421446006414	0.943392092118189
Merged-chr7-105736515-4	chr7	105735995	105736995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	89.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	7.57840105253858	7.84443525254369	7.41267176962911	7.68349399371031	7.62488637031248	7.45889298129283	-0.0519961890484241	0.831353121468735	0.960444904168444
Merged-chr3-54316977-3	chr3	54316454	54317454	+	819.68335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-44153.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	4.31654106664643	4.51754065537848	4.87126690680822	4.44718124771625	4.5304250743841	4.76214511662603	0.00778493830212105	0.986286491600412	0.997033990984076
Merged-chr2-174437879-4	chr2	174437384	174438384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1155.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	9.12750487803984	9.31796401316345	8.75308319808515	8.92873006544314	9.43142607216394	8.69944854302428	-0.0364068491235434	0.895563323339386	0.975665889379756
Merged-chr14-48459506-2	chr14	48459017	48460017	+	745.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	13165.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	5.4037960381856	5.67430740018714	5.94199977080223	5.348970953678	5.42765382419721	5.45219910207169	-0.513922468366947	0.140173431878685	0.500409770025813
Merged-chr2-158117034-2	chr2	158116534	158117534	+	943.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009373, exon 13 of 13)	3' UTR (NM_009373, exon 13 of 13)	-25237.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	2.83144654425329	2.82202147663541	3.54319469982076	2.65037394123399	2.66471477371697	3.32661449746565	-0.746356983410564	0.570598823131947	0.869253690275099
Merged-chr11-59546322-2	chr11	59545822	59546822	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	3636.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	4.0405660418488	3.7251803779366	3.72436401575707	3.92833665493647	3.99535456562971	4.35570129712892	0.761872316594803	0.156948361686418	0.527816433819287
Merged-chr14-54463666-1	chr14	54463166	54464166	+	999.0	f1_c57bl6.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-481.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	6.70879824007892	7.08656426321576	6.75732099689411	6.90299783853143	7.19694931972073	6.94969037302278	0.248341374406897	0.358267505486679	0.744602774931622
Merged-chr11-115482255-2	chr11	115481755	115482755	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	6588.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	3.06941011116892	3.08613503485452	3.28187305286953	3.2928155758969	3.1798431151885	3.45917816914549	0.691263887966179	0.277783449215975	0.67503300845077
Merged-chr10-93068224-1	chr10	93067724	93068724	+	557.0	f1_c57bl6.idr	intron (NM_001347060, intron 2 of 67)	RMER5|LTR|ERV1	13372.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	2.60361540492478	2.78092197166612	2.60953220442263	2.67010391363676	2.6136685794858	2.98439867515979	0.477641573058696	0.534650601971164	0.853068627162717
Merged-chr4-102573499-4	chr4	102573048	102574048	+	775.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	3488.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.84213129399065	6.96818570988575	7.12415093835093	7.09718792008535	7.44296896167831	7.34266391118236	0.493651675595796	0.0510599385079806	0.287962272154809
Merged-chr15-76195806-4	chr15	76195319	76196319	+	963.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-109.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	3.83749657637553	3.69608249747513	3.88600076338955	3.70603404175397	3.47661539046072	3.54001582229383	-0.783792493119576	0.157465557003613	0.528765125333521
Merged-chr1-52499239-2	chr1	52498739	52499739	+	868.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008667, intron 1 of 7)	intron (NM_008667, intron 1 of 7)	1209.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	4.39648666086596	4.53903574012245	4.2432236708216	4.82196538655527	4.51742191117709	4.78238105553483	0.73284104900085	0.0970566051931766	0.415426234820671
Merged-chr8-110997771-4	chr8	110997241	110998241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	82.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	6.78717440642649	7.23805259850845	6.70420259363549	7.07037086366266	7.39246716853352	6.87576740332288	0.30167056921548	0.30880241714499	0.704759634817202
Merged-chr8-83081259-3	chr8	83080774	83081774	+	919.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-84078.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.94296140650311	6.45164087395415	6.34456347284205	6.00776610150935	6.10438390571592	6.40402828740893	-0.148268247691162	0.640451238967893	0.898483031109382
Merged-chr17-15743535-3	chr17	15743021	15744021	+	858.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 17 of 35)	intron (NM_007690, intron 17 of 35)	38554.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	4.31735962207356	4.33877277418969	4.07973541379131	3.96833737094899	3.58215536133329	3.84225999952568	-1.37708403270054	0.00889165895302326	0.092783691768643
Merged-chr7-39552694-4	chr7	39552235	39553235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	34969.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	7.28218966678083	7.62394785611805	7.22062618453167	7.5632638597641	7.53220000347095	7.22877276014486	0.0898648246026622	0.727111043808057	0.930106435835116
Merged-chr17-74866514-2	chr17	74866014	74867014	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139015.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	5.68756389530586	5.32754311328344	4.74341843084842	5.87534243308641	5.75930848864969	5.30533736283261	0.663621337988948	0.133743073815131	0.489009343331084
Merged-chr9-47634939-4	chr9	47634461	47635461	+	947.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	104609.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.01962775367226	5.92349661730122	5.96657260971712	6.44307665369259	6.61524346284763	6.33275367404758	0.848172785131016	0.00264467495358985	0.0382377260709477
Merged-chr13-23740916-2	chr13	23740463	23741463	+	707.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACCC)n|Simple_repeat|Simple_repeat	2156.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	6.12531598582152	6.44639762230234	5.87633470225508	5.76777247120675	6.23670047858273	5.98807529714521	-0.274886476911658	0.411321082556718	0.783877099438722
Merged-chr13-112660683-4	chr13	112660190	112661190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178746)	promoter-TSS (NM_178746)	-76.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	6.43043718463913	6.43946597654104	6.06893262117461	6.88273250714891	6.88612652667313	6.3136798790893	0.635907606466331	0.0402225342149421	0.249782567874984
Merged-chr5-67830739-2	chr5	67830239	67831239	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	AT_rich|Low_complexity|Low_complexity	16692.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	4.9721271016413	5.15509156910578	5.29271649126402	5.31549306793922	5.57802712482282	5.50264660830627	0.667023219038188	0.0596843532817151	0.316241084429673
Merged-chr14-47181656-2	chr14	47181156	47182156	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	7757.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	2.62051768206406	2.35048375668877	2.66549589164934	2.48141774304986	2.28176286348429	2.49024178043664	-0.809721479124265	0.333546269875169	1
Merged-chr17-33992022-4	chr17	33991556	33992556	+	961.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	8277.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	2.88993780235749	2.77708396165164	3.13388225732212	2.62160870494963	2.43520963398738	2.80872173893125	-1.72894473684176	0.0340539714676764	0.22573815419722
Merged-chr19-47146621-1	chr19	47146121	47147121	+	572.0	f1_balb.idr	Intergenic	Intergenic	-2447.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	2.27391269958587	2.40008369275988	2.4982255566907	2.6357448056855	2.44835249837166	2.75703778151996	1.37123790522853	0.0985918160844776	1
Merged-chr9-66898038-2	chr9	66897538	66898538	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	21667.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	4.50694707544529	4.41730877883316	4.39791455078955	4.48625964520814	4.54101109223973	4.59148188922065	0.236673630633631	0.576690879864537	0.871688505677889
Merged-chr15-99498139-4	chr15	99497628	99498628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-23398.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.78435428672101	4.65217280372888	4.88578126364263	4.73557431898512	4.73441723006153	5.14667907358886	0.232831539250903	0.570432253561711	0.869196267207969
Merged-chr5-88586431-2	chr5	88585931	88586931	+	605.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	2918.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	3.48803560031496	3.1218194389559	3.70145083734631	3.10058625411733	3.26977263388794	3.2528112137614	-0.953581555529686	0.151735854653135	0.519381175448518
Merged-chr16-94625912-4	chr16	94625401	94626401	+	991.008301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	14482.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.41606311585493	5.31331444513022	4.96650250732819	5.17977653155945	5.46132538702447	5.37752443698669	0.177672324408653	0.630529160226979	0.894734411238057
Merged-chr5-122649495-3	chr5	122649008	122650008	+	896.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-916.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	4.13860139676399	3.91894796288752	4.0355820797596	3.37434716991487	3.15602492886661	3.60704093266421	-2.43183881285972	0.000101485553730284	0.00286976863560254
Merged-chr11-98782100-5	chr11	98781610	98782610	+	729.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-6733.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	5.13905590163912	5.3005169287374	5.23693896503886	5.14290388241686	5.17273298098843	5.55890053171901	0.132596328050076	0.716129186079224	0.926569584146506
Merged-chr17-34882110-2	chr17	34881610	34882610	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013484)	promoter-TSS (NM_013484)	-10.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	4.66917767436096	5.1157048661151	4.62581470189774	4.65677671632905	4.87765626266008	4.7348190806718	-0.158242842001308	0.711214866236347	0.924624886173991
Merged-chr4-147586882-2	chr4	147586382	147587382	+	797.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33605.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	2.63654057279562	2.66177322560013	2.96663348875246	2.61857085871618	2.61041649219397	2.74857120273706	-0.535530538337353	0.480039782719642	0.824474204175932
Merged-chr18-3281104-4	chr18	3280600	3281600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	32.0	NM_001311066	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	8.27152789568208	8.85750110232547	8.270081206707	8.378526174262	8.8023136837414	8.0028546705826	-0.0807576911115345	0.787371244862586	0.94877064431094
Merged-chr2-52918343-3	chr2	52917843	52918843	+	889.544434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	60475.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.37811276124226	3.43418747651934	3.61561954362596	3.78455346929775	3.38507028753966	3.52608576732499	0.360635068647337	0.543234427183531	0.857545957833401
Merged-chr7-126760751-2	chr7	126760251	126761251	+	987.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011952, exon 2 of 9)	exon (NM_011952, exon 2 of 9)	1125.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	3.21740742210297	3.33396781801927	3.62638610084505	3.16297818560919	3.21085565103305	3.49722635694587	-0.409181865077954	0.521921803749942	0.84736361149322
Merged-chr4-115737708-4	chr4	115737209	115738209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172698)	promoter-TSS (NM_172698)	-364.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	6.761251469155	6.9646854543527	6.69174912234504	6.77991540067707	6.97558783595619	6.42377916325924	-0.0866820215665026	0.760877762153492	0.941046607439565
Merged-chr10-99933118-2	chr10	99932618	99933618	+	648.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-82703.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.92701805170069	3.85030399214005	3.81833071502678	3.70457471889649	3.77826103426533	3.67679530468669	-0.46543207980867	0.375612330752878	0.758851065703868
Merged-chr1-62736701-4	chr1	62736193	62737193	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	33376.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.38208555682394	3.16794735185035	3.09850341014393	3.24581640400776	3.07949857611455	3.34399151772647	-0.0194143032203172	0.976114160649792	0.994572735300192
Merged-chr12-4640992-3	chr12	4640510	4641510	+	832.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001198969, exon 17 of 17)	3' UTR (NM_001198969, exon 17 of 17)	48002.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	4.00616045919999	3.78528705207198	4.07589377964049	4.03265639357068	3.87933950575455	4.31569011374244	0.359539814720704	0.487054344794759	0.828231456470534
Merged-chr11-5837326-1	chr11	5836826	5837826	+	797.666687	f1_c57bl6.idr	intron (NM_017401, intron 1 of 10)	intron (NM_017401, intron 1 of 10)	690.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	5.10345826987647	5.35057720783311	5.4011118012815	5.49226921078684	5.32013272426977	5.67992889146073	0.407893479558192	0.248688195629656	0.645819769301048
Merged-chr2-131430628-4	chr2	131430130	131431130	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61232.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	3.66908675109761	3.90278381740325	3.53000054933542	3.58123291209842	3.54319396788559	3.48691191092269	-0.619076182724734	0.279727435678888	0.677383093273448
Merged-chr5-43081981-4	chr5	43081466	43082466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151497.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.20347713243493	2.95349542852979	2.92365042796131	3.10029276120269	3.14135212501943	3.17924803765609	0.45022899206312	0.502633191607829	0.836562439638842
Merged-chr5-138171996-4	chr5	138171499	138172499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	-22.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	5.87733054413954	5.95129597621085	6.22848646005777	6.10909537986083	5.9195968071044	6.34415674300613	0.182983506841775	0.558025292182139	0.864474137025359
Merged-chr9-106222494-4	chr9	106221967	106222967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-131.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	7.10262453896813	6.92919675698159	6.30040163673102	7.1110123116485	6.87253602246746	6.63930553216378	0.0913976819688504	0.776242155989135	0.94480820353868
Merged-chr3-27270324-4	chr3	27269844	27270844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46733.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	6.77056755121141	6.51302845800476	6.44831732133008	6.81365567835572	6.91587118426315	6.34813470620023	0.217626727131165	0.461989150031326	0.815107818354545
Merged-chr8-109694883-2	chr8	109694383	109695383	+	549.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1589.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	4.72387034238272	4.6743976940559	4.52516689424322	4.6709592718355	4.57037335724529	4.54953646489409	-0.123799748584917	0.764244809641519	0.941958626520407
Merged-chr13-46930515-4	chr13	46930011	46931011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-793.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	6.81331186727198	7.13529934351206	7.21728623438467	7.12039552105324	7.08247940221417	7.04116529282879	0.0319171190751835	0.900126320677041	0.976728292075907
Merged-chr1-167350619-2	chr1	167350119	167351119	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019993, intron 1 of 10)	intron (NM_019993, intron 1 of 10)	628.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	6.79453370394613	7.06758586871497	6.90660776286392	6.86903088534982	6.93796231712455	6.59997492801212	-0.168999324058111	0.521753442578674	0.847186270857377
Merged-chr4-82867307-4	chr4	82866822	82867822	+	892.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7649.0	NM_026647	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	2.7586879256928	2.74544656353183	2.85219519591459	2.85395488173004	2.69273842243892	2.74070173675977	-0.107361487538418	0.881549306163962	0.972798889530801
Merged-chr14-57378307-3	chr14	57377809	57378809	+	761.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	20174.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	4.17372125941824	4.42217329656479	4.34054126134201	4.09230291533982	3.99867739920922	4.23256745593285	-0.592247767453705	0.210202198450781	0.602200074865266
Merged-chr14-19777618-4	chr14	19777119	19778119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	26362.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.67801213015529	5.71666508098346	5.91643370679385	5.54323959879245	5.3584813046713	5.22980306890218	-0.712043251724056	0.0333529247993542	0.222874250458133
Merged-chr5-140508861-4	chr5	140508359	140509359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	3250.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	6.42696162534033	6.41154205494482	6.1835642317995	6.56205471901899	6.42906474621721	6.32817924001376	0.15146942448691	0.583700044666828	0.874225271981634
Merged-chr10-60341777-4	chr10	60341270	60342270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	ORR1E|LTR|ERVL-MaLR	-5081.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.62074707572384	4.11160550775964	4.35577445586961	3.91843928931607	4.06985681397878	3.94910126894842	-1.10499945855968	0.0290898907766439	0.204837770984063
Merged-chr5-110387100-4	chr5	110386585	110387585	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028596)	promoter-TSS (NM_028596)	42.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.78214657678342	4.45575789193771	4.46453758256051	5.1414122906852	4.9573092360952	5.11500337790888	1.0949156939531	0.00772547675745121	0.0839082978767785
Merged-chr11-100628232-2	chr11	100627732	100628732	+	893.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_028024)	TTS (NM_028024)	5277.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	3.86037922717505	3.869655483371	3.91397829664956	4.1922237158734	4.26575426294477	4.31061170041544	1.09954258590888	0.0225989371554601	0.175084949984313
Merged-chr2-59616664-4	chr2	59616162	59617162	+	928.8624880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4620.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	6.53587626370372	6.57304563903204	6.40433602399838	6.37782670125844	6.48885220019252	5.98088034392016	-0.316663031549461	0.281961583566418	0.679908771156903
Merged-chr13-63563354-6	chr13	63562859	63563859	+	913.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008957, intron 2 of 23)	CpG	2376.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	3.93953923312641	3.6685942152691	3.52021366272191	3.89928716529306	3.42320314881605	3.65022902985173	-0.184207316981172	0.757322061801595	0.939861209437025
Merged-chr1-167246469-4	chr1	167245984	167246984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030724, intron 1 of 6)	L1M4|LINE|L1	38643.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	3.62799854690813	3.3613634644023	3.72973750908111	3.26578695231008	3.13078584216779	3.38825698318426	-1.24420343773011	0.0467314824887819	0.273525126261013
Merged-chr11-108215020-4	chr11	108214516	108215516	+	889.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	128872.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	6.52262598056855	6.99264918525435	6.46730130599734	6.69706806839512	6.79680454210968	6.06767210697077	-0.188225207006532	0.575401627558073	0.871089076039513
Merged-chr1-43447824-4	chr1	43447321	43448321	+	808.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	2070.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.39114004802921	4.2623478068353	4.1828769404192	5.00563763984564	5.061741359668	4.35919673223298	1.37882604555715	0.00360074247118059	0.0481456820732757
Merged-chr17-72835273-2	chr17	72834773	72835773	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1355.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	6.86506615155773	7.08318652494553	7.12247348123863	7.23345178851158	7.33899259550541	7.35298899942791	0.427498160272375	0.0754503640130745	0.361702707195938
Merged-chr17-29614866-4	chr17	29614366	29615366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132314)	promoter-TSS (NR_132314)	77.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	6.5875149817618	6.49380739711934	6.57257260849008	6.37565059588109	6.05494524832227	6.24310057122025	-0.533154817954045	0.0545293688800854	0.299897180661191
Merged-chr16-33885828-4	chr16	33885337	33886337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	56172.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	6.39922544058569	6.83483642065043	6.52997161615641	6.77784767516181	6.64634038926515	6.48013462738342	0.0607206269770665	0.830836426446932	0.960370002015736
Merged-chr3-142620652-4	chr3	142620141	142621141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-22.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	8.42361109489322	8.54318991285491	8.20132073874954	8.08069566570565	8.33934161849779	7.99967341599745	-0.346061193715921	0.134386968541056	0.490106421162394
Merged-chr1-54910970-3	chr1	54910471	54911471	+	697.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	15416.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	5.66042380425444	5.65439865713031	5.44231571371125	5.37087280249738	5.68003945747754	5.70233266923383	-0.00773107591060008	0.981525882810235	0.995717195177154
Merged-chr4-59177748-4	chr4	59177243	59178243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11807.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	5.52167689517711	5.15346159984486	5.35849132597902	5.53731828769587	5.66029723213548	5.67746407515965	0.520819467159984	0.126215410478188	0.47505911589402
Merged-chr1-131973405-3	chr1	131972839	131973839	+	708.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2730.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	6.64957449762066	6.53925280295868	6.78414756474604	6.7280204786131	6.73831075066596	6.92733822061281	0.221035242370282	0.393044788983341	0.771429661681589
Merged-chr12-36041167-3	chr12	36040663	36041663	+	616.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	1315.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	5.75369320913249	5.90149302739306	5.45670249251563	4.18651921224239	4.22211059453111	4.20417771167098	-3.55519115647448	1.48921351994701e-14	3.84827573191771e-12
Merged-chr11-93955917-4	chr11	93955374	93956374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077529)	promoter-TSS (NM_001077529)	-91.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	7.42400510755084	7.57160208605958	7.75842056979769	7.40514198601801	7.46130688673653	7.40405613114444	-0.235623522711153	0.311823838027233	0.706723622367304
Merged-chr16-20677573-2	chr16	20677073	20678073	+	581.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145941, intron 6 of 32)	intron (NM_145941, intron 6 of 32)	4846.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	2.65141644532168	2.51615031901252	2.67221368090872	2.59350615239746	2.44211340227365	2.49160726569412	-0.610040836593281	0.436062884027491	1
Merged-chr7-127745940-4	chr7	127745436	127746436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172748)	promoter-TSS (NM_172748)	-839.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	4.96802831676426	4.86519656451844	5.01075362190303	4.76211725699315	5.20949438655934	4.69219919836429	-0.0423834989894688	0.918291079529264	0.981747877135909
Merged-chr8-3517480-2	chr8	3516980	3517980	+	827.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152827, intron 2 of 31)	intron (NR_152827, intron 2 of 31)	617.0	NR_152827	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	2.83481301289968	2.86253462171838	3.31649178682116	2.95561643068699	3.0887447764009	3.00088211912153	0.00629375275549038	0.992968736644854	0.998634783457053
Merged-chr8-108316380-4	chr8	108315908	108316908	+	954.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	268269.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.88438241170906	4.69414852790223	5.18659567369826	4.98820049868474	5.06307955601608	5.50103470445842	0.566306315767789	0.16791021324339	0.544130536211812
Merged-chr11-94986446-1	chr11	94985946	94986946	+	548.0	f0_balb.idr	Intergenic	Intergenic	-4766.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	3.62793116878545	3.761762662824	4.4796757965613	3.85437249265832	3.60141771781104	4.11788076828726	-0.402766186972467	0.51228897164956	0.841860053306022
Merged-chr12-112865609-2	chr12	112865109	112866109	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4693.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	5.23621445970303	4.73933729383334	5.0800955591652	5.03373056171523	4.71433691399569	4.73848449704864	-0.429916481193884	0.299744744222621	0.696408127471824
Merged-chr19-47440234-4	chr19	47439722	47440722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	24189.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.97707373894614	6.44807627575775	6.27087488167825	7.00142967249552	7.03837690981664	6.47765967841292	0.404560306698526	0.220637263550271	0.615199565226559
Merged-chr7-80073493-2	chr7	80072993	80073993	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045695, intron 1 of 2)	intron (NR_045695, intron 1 of 2)	1764.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	4.83050874520547	5.29305335117107	5.25100895533285	5.07394633543282	5.19628465667808	5.37374523485092	0.15665842133513	0.683748921909295	0.915479407206029
Merged-chr4-128727540-4	chr4	128727040	128728040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-31.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	7.60788659613334	7.21142475389739	7.24463839515018	7.66079792687289	7.60645282258185	7.32580074547328	0.252790272107358	0.324632933800375	0.717545667286724
Merged-chr17-71214755-3	chr17	71214245	71215245	+	863.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	10091.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	6.79274443857267	6.89456488721353	6.89773465055519	6.82301284207021	7.29422663509662	6.77529612191273	0.2124374009816	0.443547673909714	0.803857432556438
Merged-chr5-85915199-4	chr5	85914674	85915674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150409.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	4.78746334187282	5.00167238732147	4.73783698668097	4.61893763029163	4.63298900295308	4.80377348927715	-0.397655247157071	0.323739029588893	0.716980574752671
Merged-chr1-157502958-4	chr1	157502455	157503455	+	719.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151610, intron 1 of 2)	intron (NR_151610, intron 1 of 2)	-3841.0	NM_033354	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	3.13254978059292	3.08100477311956	3.18627478710631	3.04196818115186	3.16857816730908	3.47067411826634	0.424776084049167	0.515928191839524	0.84400489988974
Merged-chr7-101653875-3	chr7	101653401	101654401	+	787.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9867.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	2.64512169048872	2.63237439463618	2.95451088155518	2.45285482194374	2.55121322845859	2.55030088217139	-1.29698920988204	0.105166258238471	1
Merged-chr9-64021054-5	chr9	64020450	64021450	+	925.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008542, exon 1 of 4)	exon (NM_008542, exon 1 of 4)	1109.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.65051715898832	5.76832810817994	5.9846459420943	6.03467147713135	5.71512100422481	5.6757455389167	0.0377464995155412	0.907525725091746	0.978939051225517
Merged-chr11-100473193-2	chr11	100472693	100473693	+	691.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-411.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	4.74047554549226	4.98502737479649	5.03281426831226	5.0938908278647	4.6520002458274	5.22379487884873	0.171386638494312	0.680515845385468	0.914280879868547
Merged-chr9-92457927-3	chr9	92457447	92458447	+	988.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178711, intron 1 of 8)	CpG	569.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	4.48898395130181	4.58227690535444	4.4615996322445	4.04970390953958	3.56076353493292	3.74604287515701	-2.11609000084606	7.80263042388003e-05	0.00230064235404043
Merged-chr5-31602597-4	chr5	31602113	31603113	+	972.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11338.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	4.27999180967557	4.34622930111592	4.80428781658124	4.44365001598658	4.39488392810586	4.53712341603707	-0.0725443311032211	0.874572638302704	0.970754540400126
Merged-chr2-27538332-2	chr2	27537832	27538832	+	742.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23185.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	2.68775222202958	2.87536936825677	3.100339889026	2.69716704262705	2.84013165257912	3.00510135344382	-0.210562631945104	0.776253182234002	0.94480820353868
Merged-chr8-39619980-4	chr8	39619462	39620462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031195, exon 5 of 9)	exon (NM_031195, exon 5 of 9)	22716.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	6.55991994302387	6.81302388218122	6.58939338213769	6.58604697399696	6.84575862874301	6.64852890426577	0.0646843209407483	0.809163231668086	0.954721853010197
Merged-chr6-15748049-3	chr6	15747545	15748545	+	687.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	27384.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.21325816005595	3.20832779643355	3.11763448388763	3.20688363215364	2.96032814179027	3.30430290821906	-0.105449375428651	0.872168243378918	0.970261003150518
Merged-chr16-92706666-2	chr16	92706166	92707166	+	841.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-9337.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.4500153685249	4.42809059009501	4.61126790071736	4.29678136412867	3.95934631286987	4.21583640707938	-0.901352626150532	0.0534183290876828	0.296322155115194
Merged-chr11-69752508-2	chr11	69752008	69753008	+	801.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291068, intron 1 of 28)	B1_Mur2|SINE|Alu	6125.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	3.38855126770335	3.13982592103245	3.15987256349901	3.38082343021652	3.35940798583048	3.35047189337865	0.50291176261307	0.418814256467845	0.788755230826602
Merged-chr9-35559501-4	chr9	35559000	35560000	+	850.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023292, exon 2 of 5)	5' UTR (NM_023292, exon 2 of 5)	940.0	NM_023292	67049.0	Mm.425574	NM_023292	ENSMUSG00000032103	Pus3	2610020J05Rik|5730412F04Rik	pseudouridine synthase 3	protein-coding	3.44210007520436	3.58714292152385	3.77042329439657	3.51508236791024	3.11219727510908	3.74373601264961	-0.448398548330969	0.486542072420161	0.827914533261145
Merged-chr4-156033681-4	chr4	156033234	156034234	+	935.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7412.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	4.01083983464125	4.00943191930273	4.04497094276419	4.40334249244553	4.2287112292269	4.3872482582173	0.886223448158898	0.058307461618954	0.312055552011159
Merged-chr16-52089616-2	chr16	52089116	52090116	+	595.25	f0_balb.idr|f0_c57.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	58067.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	2.95427988312835	3.15788505631669	3.4457354498801	3.28843735783069	2.98445689342147	3.1929828924386	-0.153663816494013	0.822030878848815	0.958041123079214
Merged-chr13-90924473-2	chr13	90923959	90924959	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_024175, intron 3 of 3)	AT_rich|Low_complexity|Low_complexity	1337.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	4.20096025389048	4.5320143476693	4.17536451403869	4.32372731620453	4.51276243501986	4.47175905813627	0.303700530663671	0.511311897377683	0.841332560741837
Merged-chr17-50025792-3	chr17	50025309	50026309	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	ORR1G|LTR|ERVL-MaLR	164688.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.83536523419749	6.68335914467026	6.86586956777098	6.75350731343076	6.63450677228875	6.54254270150828	-0.226099071722164	0.379272863848349	0.761713124353586
Merged-chr4-140952450-4	chr4	140951927	140952927	+	962.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008812, exon 16 of 16)	3' UTR (NM_008812, exon 16 of 16)	5475.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	4.91776741625519	4.80142860497524	5.03113009750475	5.22357010536043	5.13951818776053	4.95240264002583	0.435735450695433	0.24609380400963	0.643210051835899
Merged-chr7-75576934-2	chr7	75576434	75577434	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 3 of 36)	ORR1D1|LTR|ERVL-MaLR	121400.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.56078653303633	4.46129669913942	4.16700445118903	3.82137610970316	3.93940165902376	3.93222803705187	-1.47330883356433	0.00311163339034831	0.043296453368579
Merged-chr6-123229822-4	chr6	123229318	123230318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020001)	promoter-TSS (NM_020001)	-25.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	6.8568271299003	6.77615146385591	6.67848629295286	6.75816308732325	6.70243850758873	6.620288609663	-0.124621087747379	0.621959160058113	0.890924463951533
Merged-chr1-180313077-4	chr1	180312572	180313572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17404.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	6.60187481120693	6.34237807633846	6.2500611947666	6.43296026734981	6.57788455762684	6.46725668738738	0.13470130398061	0.628267290677022	0.893577294752216
Merged-chr10-24040321-2	chr10	24039821	24040821	+	720.599976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	2707.0	NM_001010835	276742.0	Mm.377870	NM_001010835	ENSMUSG00000100689	Taar7e	Gm697|taR-7e	trace amine-associated receptor 7E	protein-coding	2.96811660677585	2.8277191919498	3.08950751598292	2.79157070032076	2.80243867960117	3.04858962101909	-0.39290221548311	0.578632798853554	0.872437129840066
Merged-chr6-115815163-2	chr6	115814663	115815663	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110506, intron 6 of 8)	RSINE1|SINE|B4	-6420.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	2.92099040136984	2.8880274753382	2.7849593474135	2.61400243335273	2.49721395538628	2.47001666189832	-2.07552966174148	0.0116665204852031	1
Merged-chr7-79781495-2	chr7	79780995	79781995	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12095.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	5.12335538419658	5.18352568645378	5.05037328376722	4.85860808257709	5.1962131880992	4.8541148654478	-0.273571380124731	0.475824532134379	0.82218949187564
Merged-chr9-124033269-2	chr9	124032769	124033769	+	818.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	11298.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	3.99869976018166	4.19259336436245	4.56638664728149	4.25065853304039	4.0900473679237	4.13241714226294	-0.287199202298576	0.56395975997146	0.866064332128256
Merged-chr9-58247290-4	chr9	58246826	58247826	+	933.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001311088, exon 2 of 9)	exon (NM_001311088, exon 2 of 9)	2460.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	5.73324766110731	5.53245005799882	5.87221670858798	5.98077987092449	5.79689901735934	5.90973731450602	0.330923765348043	0.292393646369496	0.689626231469153
Merged-chr1-160212976-4	chr1	160212488	160213488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	-96.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	8.16964583961408	8.42327030910815	7.92967612921446	7.85763296114422	8.12034839655264	7.9138578542881	-0.316319374114535	0.191495189907427	0.578091345710453
Merged-chr8-123024951-2	chr8	123024451	123025451	+	917.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17333.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.61254262241418	5.27544895271458	5.48918441260665	5.72752351821241	5.51613966237775	5.40102848523533	0.178281412451839	0.604241650069914	0.883017336250368
Merged-chr17-27026712-1	chr17	27026212	27027212	+	715.0	f1_c57bl6.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1915.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	5.48438979695528	5.33086882591419	6.0075531248207	5.49587463282963	5.45449446386319	5.30505203503651	-0.383731686295441	0.302988491161122	0.69972220909689
Merged-chr3-61416694-4	chr3	61416197	61417197	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52190.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	7.88449343296376	7.87010907564837	7.59200551828654	7.55042797184552	8.03512114910088	7.51715233395587	-0.0859228655689438	0.743187182168339	0.935528839299546
Merged-chr1-131095133-2	chr1	131094633	131095633	+	978.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2710.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	6.16026111354906	6.18554024783067	6.0774754181478	6.04582557611826	5.99491598550494	5.8509577022712	-0.297735770354895	0.302358846342989	0.699046259697346
Merged-chr17-48270025-4	chr17	48269529	48270529	+	942.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	5734.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.32080120222946	4.97137696301913	5.68497908924773	5.40805908765194	5.17144584265743	5.43279269682646	-0.018205882946735	0.962847471043568	0.991002577440419
Merged-chr17-34924580-6	chr17	34924075	34925075	+	991.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	intron (NM_023557, intron 13 of 20)	-6678.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	6.45164242040971	6.67433594067299	6.7708451725255	6.48044783925982	6.92437764098726	6.85827602833491	0.215760641471194	0.444834919931636	0.804512062173139
Merged-chr10-95841545-1	chr10	95841045	95842045	+	551.0	f0_balb.idr	Intergenic	Intergenic	-99118.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	2.9360149279773	2.95367908191723	3.13245912554632	3.18642542575218	3.09047362776408	2.96674968587289	0.374793869197851	0.57602289726187	0.871496930818991
Merged-chr14-75180802-4	chr14	75180247	75181247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44322.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	7.55925331969472	7.49319960861442	7.33065397191362	7.41977693827159	7.65271681859495	7.47426828629016	0.0799235612715702	0.732073875627116	0.931655063903171
Merged-chr9-7566600-2	chr9	7566100	7567100	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008611, intron 8 of 9)	intron (NM_008611, intron 8 of 9)	-4796.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	4.97097816199119	5.12544811650438	4.77388054919554	5.04946098462418	5.08949543143867	4.71477518245507	-0.00213988569601134	0.99573260422916	0.998961028701257
Merged-chr11-60305788-3	chr11	60305281	60306281	+	893.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	47124.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	3.21799329476522	3.50783763520049	3.28946844934021	3.52129631349936	3.19297425290647	3.58084794167116	0.338651931258859	0.592475453297592	0.878046778323738
Merged-chr13-80899892-4	chr13	80899388	80900388	+	673.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13793.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	3.21382929385754	3.4650063113904	4.00528591166546	3.21976924302857	3.33503584067408	3.72088647240332	-0.562909089505479	0.409802533222609	0.783037226945994
Merged-chr4-32562916-2	chr4	32562416	32563416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001109661, exon 3 of 5)	exon (NM_001109661, exon 3 of 5)	8746.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	5.97473544345697	6.06712893795259	6.42396453924427	5.64373460476437	5.09306977984873	6.08289836845875	-0.889766974832257	0.0248814758814376	0.186487051067628
Merged-chr10-98776840-4	chr10	98776363	98777363	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-137779.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.2197672232125	6.32630647688756	6.81169770022703	7.03975439125613	6.9227379873682	6.94264771266634	0.194157124576928	0.542083416247417	0.857034750433211
Merged-chr2-5771077-4	chr2	5770569	5771569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56307.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	6.16097483575593	6.19225949856548	5.8058395891263	5.90301654230364	6.05033319728578	6.08553432519187	-0.107669987109971	0.723646436110992	0.929086587602393
Merged-chr7-64141511-4	chr7	64140999	64141999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12336.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	8.24729905836767	8.5356322472713	8.25146925906244	8.30220860480927	8.50623515406758	8.11175668490568	-0.0451445291492017	0.846165418482616	0.963961283421434
Merged-chr14-74946837-4	chr14	74946319	74947319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	1058.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	6.38764879211147	6.58708890287868	6.56553146917594	6.83770748188674	6.81763048511994	7.00937355721262	0.584065736212688	0.0241392646784626	0.182747696785144
Merged-chr11-79398571-3	chr11	79398065	79399065	+	846.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010897, intron 5 of 57)	Lx8|LINE|L1	58673.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	2.99959156721906	3.20258518379897	3.35377553881557	3.66265251689867	3.65266142251055	3.48277880504701	1.65862387727702	0.00893473624651903	0.0930697963946364
Merged-chr15-99382268-2	chr15	99381768	99382768	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10679.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.6478500639865	3.45674488865001	3.5872347037083	3.60683783804984	3.40792686244705	3.60465173286593	-0.0995023929207161	0.861724392564219	0.967996224966109
Merged-chr2-101762640-4	chr2	101762147	101763147	+	775.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	35060.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.21275642130619	6.29770321284109	6.33332016601169	5.91681000427295	5.97770801184038	6.11261771254925	-0.476356359003604	0.0928508926399601	0.406029907230702
Merged-chr4-126023360-1	chr4	126022860	126023860	+	781.0	f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1299.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	6.40044487117177	6.61985067782502	6.57826363088998	6.95782125974492	7.06811307984176	6.51125364899504	0.540693276074335	0.0578626009311549	0.310868315476699
Merged-chr15-83009743-4	chr15	83009225	83010225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13413.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	6.99343930603514	6.9130750192525	6.98086621389014	7.05786736589356	6.88942161094181	6.88433448828135	-0.0227958013478504	0.925368985558999	0.983172053608371
Merged-chr3-79528145-4	chr3	79527642	79528642	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39537.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.07201059820461	5.10699155541469	4.53260985964132	5.55558831113325	5.31609478983411	4.95997354349848	0.748831588924011	0.0842209154236213	0.383991996195544
Merged-chr10-24641574-4	chr10	24641080	24642080	+	983.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	46138.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	7.21060779042678	7.36483448046012	7.34359965615015	7.31355137355853	7.66848321463635	6.92301411813153	0.0655722995546853	0.816367477162726	0.956664796338092
Merged-chr4-118360046-4	chr4	118359526	118360526	+	955.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026601)	promoter-TSS (NM_026601)	27.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	7.19866252876503	7.70244623681376	7.43185180532248	6.18370765695042	6.02607781259974	5.98935412467265	-2.18679076593194	1.34047401712092e-14	3.50748937159111e-12
Merged-chr2-157141347-1	chr2	157140847	157141847	+	541.0	f1_balb.idr	Intergenic	MusHAL1|LINE|L1	-6125.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	3.57524534500158	3.66356677792067	3.68113875328277	3.65931160727797	3.57997424527744	3.89750035191825	0.241673926392773	0.661071096398334	0.906260725325043
Merged-chr9-108490691-4	chr9	108490171	108491171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168371)	promoter-TSS (NM_001168371)	-5.0	NM_001168372	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	7.54312969869478	7.71015935729103	7.47095034165191	7.48281857673891	7.55814069434391	7.75132765161151	0.0215361639577408	0.926235133772084	0.983383377195576
Merged-chr5-3300930-4	chr5	3300425	3301425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42968.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.26591966384971	5.43018059275436	5.22071240425239	4.65968219945564	4.27623646806215	4.53153598530805	-1.86650717466457	5.04149675009793e-06	0.000223134500841568
Merged-chr2-142699490-4	chr2	142698984	142699984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	201980.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.71910458138531	5.72896529195229	5.87155533367774	5.916563891867	5.90040059312651	5.97918911122994	0.286728240818385	0.337804594297759	0.72769978571614
Merged-chr2-119476983-7	chr2	119476476	119477476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026574, intron 1 of 35)	CpG	653.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	8.50236503482809	8.22005765112626	8.15857260724682	8.3421105667587	8.24367078017902	8.05073734301032	-0.119154536194206	0.601671753979966	0.881998497315248
Merged-chr6-58902117-2	chr6	58901617	58902617	+	670.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361966, intron 23 of 25)	MIR|SINE|MIR	5009.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	2.55830365051385	2.64742788112006	2.5600568507845	2.75254538565243	2.62159281107743	2.75984015908955	0.663770458317491	0.379092818740709	1
Merged-chr7-27725846-4	chr7	27725421	27726421	+	772.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-5488.0	NM_029531	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	3.36659259369183	3.04836521809307	3.46802568438662	3.56596676125807	3.05120258876991	3.0753357350001	-0.192921627765356	0.78235123742766	0.946484752418558
Merged-chr17-33823576-2	chr17	33823076	33824076	+	919.1666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	986.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	5.83305427108194	5.87572034347616	5.18832887033151	5.70339265931477	5.7582212902723	5.36270321433789	-0.0993789155519949	0.793096160460372	0.950243729178677
Merged-chr17-17865373-4	chr17	17864875	17865875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10187.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	6.90986219051749	6.59728868382316	6.40759802583775	6.60832947494238	6.7435243892037	6.79301957120317	0.0796306920438094	0.77627076309877	0.94480820353868
Merged-chr6-125332969-4	chr6	125332442	125333442	+	996.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	11602.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	6.53592970819017	6.52418435571053	6.59588952033108	6.57636101096993	6.82869037564728	6.82610590826274	0.315893561079806	0.224849170677523	0.619740315016701
Merged-chr2-53192733-2	chr2	53192233	53193233	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022989, intron 1 of 3)	intron (NM_022989, intron 1 of 3)	649.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	5.12102234371177	5.15918031353148	5.38426451705929	5.40425124963802	5.24579037558317	5.19850051626977	0.142925184440621	0.686543994828286	0.916761528494478
Merged-chr16-22445065-4	chr16	22444556	22445556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-5486.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	7.16835275174335	6.94273857813013	7.16323174384287	7.44069633795993	7.56503544145063	7.40341863421933	0.570281438718848	0.0160985591919145	0.139447107353822
Merged-chr17-12768869-7	chr17	12768306	12769306	+	839.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	900.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	4.64547962057139	4.4981977436982	4.27890406928458	4.91525308773501	4.82812080772306	4.44770440511953	0.623898496156691	0.164053439509779	0.538101489858471
Merged-chr10-19009566-4	chr10	19009065	19010065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	2398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.71466159400327	6.55719717758908	6.33482606402494	6.72785203389769	6.89921910936227	6.35388921144099	0.221699847392429	0.453579959348529	0.809836570182111
Merged-chr15-6304010-4	chr15	6303511	6304511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	4222.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.15320744323294	4.36441926711107	4.14404609504194	4.39301090064328	4.1888520852902	4.26034410866912	0.138837317371591	0.765431531314301	0.942148336413151
Merged-chr10-79766700-2	chr10	79766200	79767200	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_027505, intron 1 of 7)	CpG	252.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	4.81024357320587	4.3976469117419	4.60521222642378	4.59516951961004	4.15816830018775	4.37367484227391	-0.579378892969766	0.21216599035514	0.604576945822415
Merged-chr5-112284548-1	chr5	112284048	112285048	+	625.0	f1_balb.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7857.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	5.04002751219146	5.26448195067144	5.62275497807944	5.14268366932547	5.14976675204576	5.33261958305422	-0.228040540246681	0.547036421667412	0.859168905101902
Merged-chr10-49151711-3	chr10	49151216	49152216	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358866, intron 14 of 16)	ERVB4_3-LTR_MM|LTR|ERVK	636221.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	3.04305747384628	3.40511517295669	3.67348158797111	2.76608757516903	2.80821398931228	2.94366253078431	-2.66450687352636	0.00066993721200286	0.0132382996875113
Merged-chr5-66125095-3	chr5	66124610	66125610	+	861.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	ID4|SINE|ID	25868.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.27677967199884	3.88835954601719	4.1232503507633	4.06738265941275	3.9786880201186	3.78565864153573	-0.445099785544366	0.390132951528958	0.769518914518539
Merged-chr9-58274104-8	chr9	58273705	58274705	+	759.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	21041.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.53493680397393	6.23829512962828	6.52282826108834	7.05807235750849	7.26316676542326	7.03858024708442	1.08349015598014	3.9814728957281e-05	0.00130374239656904
Merged-chr1-74249775-2	chr1	74249275	74250275	+	793.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	B1F1|SINE|Alu	13258.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	7.5817251343652	7.66563501778262	7.69740624131608	7.56185473075907	8.18222567946836	7.51395159577306	0.222513453077076	0.417957556287222	0.788440971405969
Merged-chr18-39249201-4	chr18	39248690	39249690	+	839.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	238055.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.96640100380857	3.86995384498215	3.8594562882775	3.98230325768354	4.18564350792772	4.07852585066804	0.558204158441726	0.260208699141394	0.657649400461384
Merged-chr6-129462198-4	chr6	129461710	129462710	+	971.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_132130, exon 6 of 6)	non-coding (NR_132130, exon 6 of 6)	-10210.0	NM_175526	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	4.790275895715	4.65761594509161	5.29551150549504	4.97468945013742	5.00657450414759	4.9096882219143	0.081024509545284	0.845975464619849	0.963945177091542
Merged-chr13-95019541-4	chr13	95019023	95020023	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172590, intron 12 of 12)	intron (NM_172590, intron 12 of 12)	43179.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	4.75079122900349	4.74791013583775	4.94484775505478	4.69015919479506	4.40274739477735	4.64090431153963	-0.555692023506891	0.180720363775501	0.562755137496049
Merged-chr17-71300078-4	chr17	71299571	71300571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10940.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	7.11359558903152	6.68933670098613	7.04097817230959	6.6264899617402	6.78746453394062	6.98250855794323	-0.241414990049208	0.381271657440698	0.763080052613635
Merged-chr2-30133739-4	chr2	30133229	30134229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-17.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	8.73358181727042	8.81215472729081	8.49010088838246	8.66088012748121	9.07813506523479	8.29623108417656	0.0531835537912393	0.842668632509231	0.963157971003253
Merged-chr11-103266078-1	chr11	103265578	103266578	+	540.0	f1_c57bl6.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	1323.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	5.23677418161552	5.38579036454962	5.29543251962833	5.59824119336602	5.52422517166114	5.15492694809235	0.277849134395541	0.432304092367894	0.797278260882748
Merged-chr1-191071126-5	chr1	191070645	191071645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	8124.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	7.69799816990383	7.77466652216813	7.70000197602978	8.23088360546547	8.58152568430985	7.93647705540589	0.794311137386449	0.00160744900265169	0.0261206677252407
Merged-chr5-115522759-1	chr5	115522259	115523259	+	611.0	f1_balb.idr	intron (NM_011223, intron 1 of 10)	PB1|SINE|Alu	16083.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	4.88973440107667	4.80742423559299	5.11817767698689	4.95517878478866	5.08704855331527	5.08349430937933	0.236580408926979	0.531994697173417	0.851867550687707
Merged-chr5-92092745-2	chr5	92092245	92093245	+	956.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-9001.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	4.82400001041935	4.63761129765291	5.03250381283028	5.14369900442817	4.90298146712464	4.84647445887262	0.314140939035907	0.432824615683227	0.797521383182824
Merged-chr13-113878854-2	chr13	113878354	113879354	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	84346.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	2.63190255598419	2.45471810858092	2.56372301900196	2.67311358281972	2.67788281676836	2.94090937124199	1.18371272424116	0.128060393380047	0.478707399984916
Merged-chr10-27366223-3	chr10	27365728	27366728	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008481, intron 5 of 63)	intron (NM_008481, intron 5 of 63)	-23638.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	3.09255055442295	3.23993804491738	3.29644633771106	2.83624907512757	2.71045845344257	3.09106555405758	-1.59189883817728	0.0284484007263303	0.201922249222596
Merged-chr13-66591865-2	chr13	66591365	66592365	+	611.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150747.0	NM_001290196	76803.0	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	2.71475777344252	2.9368831392573	3.22608396251205	2.4955871957283	2.41715639676745	2.79838445429471	-2.25708031270031	0.00943647909801552	0.0965675258624616
Merged-chr12-21265799-3	chr12	21265297	21266297	+	820.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004364, intron 25 of 26)	intron (NM_001004364, intron 25 of 26)	20487.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	3.00222302822187	3.01599513239378	3.116785769238	3.15038183755851	2.87070151616482	3.4047745268975	0.475820683123214	0.491270406159688	0.830448151501811
Merged-chr11-118226706-2	chr11	118226206	118227206	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-13964.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.51460463674192	5.41034022671009	5.5549318254639	5.37784989795647	5.42600719890435	5.5341708740565	-0.0912625435083137	0.781405987596484	0.946174647340264
Merged-chr11-17170135-3	chr11	17169658	17170658	+	931.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	10860.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	4.89800920887641	5.28793778889916	5.02411287988375	4.687937078653	4.72246117579282	5.01998512772486	-0.604913946725962	0.131837341845923	0.48558813422671
Merged-chr4-53124853-4	chr4	53124344	53125344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	L3|LINE|CR1	35051.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.55639013462189	7.49278383485238	7.3366651698437	7.44944208124592	7.65424953947095	7.16269768335249	-0.0298402362500924	0.906003417212927	0.978576016264467
Merged-chr18-62231176-1	chr18	62230676	62231676	+	585.0	f1_balb.idr	Intergenic	Intergenic	51076.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	3.75066250326062	3.51111021564169	3.62117937072573	3.82296070240835	3.6564331928492	3.63781079687225	0.263850780315379	0.633372434966881	0.896027569728552
Merged-chr8-71286488-4	chr8	71285990	71286990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	13776.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.54058847183731	6.79531276751878	6.64995569528548	6.92749665982615	6.98460422870579	6.55252445577534	0.279940404596141	0.308406487805099	0.704469935667044
Merged-chr13-34667402-4	chr13	34666901	34667901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_105041)	TTS (NR_105041)	14478.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	5.36711324270733	5.70116420562301	5.40737736111657	5.37289250781244	5.46899864155894	5.44044315851859	-0.150725108299237	0.658617659205534	0.905014667687917
Merged-chr12-69448070-4	chr12	69447575	69448575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27475.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	8.36410542755304	8.17585155958344	8.01776018537922	8.28530519008114	8.63742461333913	8.04329607702499	0.218762798556738	0.388572277372744	0.768440363567345
Merged-chr16-49852198-2	chr16	49851698	49852698	+	747.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-3456.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	3.60135609547099	3.56311818123076	3.64804414314069	3.6643791265183	3.76122599289045	3.55556121093827	0.23285905229824	0.672637137939664	0.910949422492829
Merged-chr3-87617525-4	chr3	87617001	87618001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-58.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	6.73664803318099	6.84680087277336	7.17733266382399	6.91924083923114	6.54339111295733	6.49596235666427	-0.404790173848338	0.160416298645208	0.533005464258189
Merged-chr18-65501558-1	chr18	65501058	65502058	+	727.666687	f0_balb.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	70561.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	5.40794048871867	5.08750400144361	5.05861499430593	3.846508449193	3.98431489393111	4.2286996482502	-3.06596091148648	3.78093751018385e-10	4.44622603906756e-08
Merged-chr17-34743939-2	chr17	34743439	34744439	+	773.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009780)	promoter-TSS (NM_009780)	-42.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	3.98258566403376	4.07116515698779	4.17274287957242	4.69628334226751	4.63285511528068	4.6710312175993	1.56911092620461	0.000463738703500673	0.00991438079159404
Merged-chr7-101386955-2	chr7	101386479	101387479	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 8 of 33)	intron (NM_001040111, intron 8 of 33)	1453.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	3.27097034180827	3.3061801096857	3.53603089606257	3.61400817306898	3.21214280167584	3.55426140773445	0.364835412999977	0.556739945490711	0.8637300661975
Merged-chr5-140615519-2	chr5	140615019	140616019	+	943.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	8178.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.09763493062129	4.90909259687264	5.78713697264618	5.29934995482137	5.29383003521587	5.48045118062829	0.0928273181358171	0.824194818020873	0.958523256704056
Merged-chr9-72958795-4	chr9	72958290	72959290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	5.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	5.99073432267379	6.31086191789684	6.18861605460873	6.54861251153331	6.53123189734041	6.24923683881474	0.473647928815347	0.102138439075375	0.426143111329095
Merged-chr8-36253795-2	chr8	36253293	36254293	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4277.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	3.41749035702294	3.30349021201055	3.19445612325848	3.15342051929779	3.08313728792159	3.43406238365299	-0.35777413544999	0.577515167746499	0.872148719828391
Merged-chr8-119828285-2	chr8	119827785	119828785	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	12294.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	5.70982207139115	5.55581145134092	5.9925228825764	5.75812855898566	5.74506666872514	5.89634303824995	0.0794026420310267	0.805598183461016	0.953956034266138
Merged-chr5-134228581-2	chr5	134228081	134229081	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010876, intron 1 of 10)	intron (NM_010876, intron 1 of 10)	1044.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	6.48698926712106	6.49993247073155	6.59999076709259	6.90738781370215	6.8011756392369	6.40293964499567	0.325486430593489	0.242451935322645	0.639569496697418
Merged-chr2-118896433-4	chr2	118895980	118896980	+	873.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5135.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	2.05512845178644	2.01985605437461	2.24959240653988	1.7971157524346	1.8138152900413	2.06742613483788	-1.8709989217676	0.0752892153146111	1
Merged-chr11-101466852-2	chr11	101466352	101467352	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	-653.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	4.74793146454476	4.67775403179884	4.50216815276612	4.47424352332302	4.3590645885191	4.34491700248393	-0.643615515911614	0.133462993961627	0.488692066303093
Merged-chr7-127406667-7	chr7	127406115	127407115	+	982.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167832, exon 1 of 3)	5' UTR (NM_001167832, exon 1 of 3)	207.0	NM_146203	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	6.18390372939739	6.44238951060415	6.63521328878787	6.11141212574522	6.35740901870851	6.16758866210292	-0.334532808207801	0.259578776848544	0.657164659506912
Merged-chr6-112696671-4	chr6	112696165	112697165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021385)	promoter-TSS (NM_021385)	5.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	8.10430932023729	8.29527517879831	7.32862729957537	7.98956035501965	7.87965908180207	7.16067271435353	-0.352634441046087	0.513629596359576	0.842702640331072
Merged-chr7-28371687-5	chr7	28371242	28372242	+	824.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290542, exon 1 of 19)	5' UTR (NM_001290542, exon 1 of 19)	920.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	4.13401765141592	3.79897061389732	3.90861853709041	4.08922877830266	3.79919956964692	3.76767369076798	-0.189708408995844	0.721307588524354	0.928451291671431
Merged-chr10-19596798-4	chr10	19596270	19597270	+	900.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010511, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	4821.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.86619444394135	5.81799227488714	5.45136153401736	5.79616755332915	5.82929940745269	5.97145432355321	0.224178564406861	0.487630556057859	0.828546758458319
Merged-chr11-97151113-2	chr11	97150613	97151613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1401.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	6.40508769699551	6.1809577613699	6.32642687813134	6.38038099789226	6.0427933994683	6.1844908428684	-0.166267558777865	0.566308657089146	0.867302474445044
Merged-chr18-84088170-4	chr18	84087646	84088646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-12.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	7.63000836570848	7.47064043773971	7.97440535773619	7.74443271330805	7.57984370281093	7.77846977403245	-0.00205853659988174	0.993395461603818	0.998651348330892
Merged-chr15-3232757-4	chr15	3232258	3233258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38009.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	4.92517332510269	4.88112371506308	5.06089317614378	4.62816736805546	4.45461640911117	5.06027443107018	-0.519160066030725	0.223056599178383	0.617907697321133
Merged-chr11-69902155-1	chr11	69901655	69902655	+	805.0	f0_balb.idr	exon (NM_001291119, exon 1 of 28)	exon (NM_001291119, exon 1 of 28)	339.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	5.73200304667626	5.23265964323137	5.67318494036332	5.75685371762275	5.43188223864406	5.76026397228235	0.169177861400453	0.63586330725618	0.896829421389054
Merged-chr10-30674928-4	chr10	30674404	30675404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-19037.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.28289078482123	6.22870130500389	6.12602306932911	6.17244626282491	6.46976195333673	6.27132206440676	0.164814619184889	0.561773608665452	0.865580593452079
Merged-chr5-76973663-4	chr5	76973188	76974188	+	902.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	3.62079447584897	3.60381363137987	3.69211924742162	3.7275711245648	3.43155054825595	3.65840119631766	-0.10710793529547	0.848628873061378	0.964356989789491
Merged-chr1-171130037-3	chr1	171129522	171130522	+	922.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025321, intron 5 of 5)	intron (NM_025321, intron 5 of 5)	8361.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	7.1367871388079	6.75851211516649	6.96258485651694	6.50438339823177	6.39766592030996	6.41469418801256	-0.823613529049636	0.00212445183781818	0.0323283446454234
Merged-chr9-120932660-2	chr9	120932160	120933160	+	549.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-740.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	2.99618794328372	2.7907094057995	3.09643764189242	3.11492088354554	2.93920223088693	3.05262788582359	0.338333581376683	0.622868446368978	0.891249034616027
Merged-chr14-55736488-4	chr14	55736003	55737003	+	883.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	9181.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	7.75186734630787	7.43606680950342	7.67568349886606	7.81239505270822	8.20363624904831	7.74125761859804	0.454744567232772	0.0717230716941802	0.351391188813814
Merged-chr4-106770976-4	chr4	106770509	106771509	+	952.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025590, intron 2 of 15)	intron (NM_025590, intron 2 of 15)	28822.0	NM_025590	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	4.03123388023907	3.91049599562192	4.05596590223168	4.02534950597085	4.18195780407403	4.12437392815204	0.342129615670425	0.479554551781779	0.824318283402365
Merged-chr14-50897592-4	chr14	50897123	50898123	+	776.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4368.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.41739769092991	4.07449305187445	4.27139201557729	4.25987812455346	4.52771173236536	4.66702941637912	0.595074254523765	0.203866350202728	0.594065140719514
Merged-chr11-80383876-4	chr11	80383312	80384312	+	968.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	533.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	7.78172235965966	8.21711063682649	7.83553710099515	7.72983799148025	8.41517577393066	8.01733681027661	0.181571162584745	0.514758224491677	0.843210843733192
Merged-chr11-78551707-2	chr11	78551207	78552207	+	870.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-972.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	3.48906063321317	3.51891700811542	3.389006679387	3.5207377997709	3.35252142459374	3.34496509842489	-0.232744901297401	0.692888152471652	0.91880752705484
Merged-chr7-104398648-4	chr7	104398149	104399149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40003.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	5.90646857294144	6.05566309233206	5.84432032489513	6.1544019502505	6.37538652354574	6.36379640930247	0.606266123279585	0.0373515954745375	0.238614322936301
Merged-chr5-104938706-2	chr5	104938176	104939176	+	663.5	f0_balb.idr|f1_balb.idr	intron (NM_030239, intron 14 of 15)	intron (NM_030239, intron 14 of 15)	44041.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	4.15475131565825	4.27206296122592	4.67457852738968	3.51210032450438	3.31506183125162	4.0358085224337	-2.30838328600792	0.000269816754377312	0.00638535622816477
Merged-chr12-40381381-4	chr12	40380885	40381885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	64405.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	5.7349061542167	5.80206191253347	5.16801278220199	5.97488160810155	5.92055613570773	5.77432362177482	0.505313106515594	0.153919337024641	0.523087753015605
Merged-chr17-71257826-1	chr17	71257326	71258326	+	595.0	f1_balb.idr	intron (NM_001357338, intron 4 of 7)	HAL1|LINE|L1	53172.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	5.63706472663785	5.72508081670239	5.54985580843739	4.07327842590188	3.84912188378867	4.25877217416777	-4.1426960556366	1.29723563075808e-16	4.91357471806816e-14
Merged-chr5-140749740-4	chr5	140749239	140750239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	25612.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	4.78146658640224	4.46983189417998	4.88236570183698	4.36460549500991	4.21440130355577	4.22127434384675	-1.12953894169064	0.012525901358164	0.11778225790599
Merged-chr2-80081493-7	chr2	80080958	80081958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	MER31A|LTR|ERV1	-42556.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	6.70259865728624	7.10686032695707	6.39353571880682	6.91372000747569	7.1052172265569	6.82651938585667	0.273158497843541	0.363943755180694	0.749357676652347
Merged-chr19-17125570-4	chr19	17125090	17126090	+	977.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_181348, exon 9 of 20)	exon (NM_181348, exon 9 of 20)	169472.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	5.85110205891949	6.22288464663082	6.07446920398578	5.83605137619565	5.84928466815593	5.88204338975419	-0.358561993225719	0.240529413001655	0.63757036720849
Merged-chr11-117991286-2	chr11	117990786	117991786	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	ID_B1|SINE|B4	4429.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	7.13594672933829	7.21151741817909	6.87258209051023	6.57397825357262	6.77701914230601	6.73094570755318	-0.602321651072397	0.0199320397989397	0.161066831852984
Merged-chr18-35919001-2	chr18	35918501	35919501	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45829.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	2.82930567814494	2.98329189878401	3.07863124788623	3.22784472432358	3.07080011657948	3.09233508701573	0.766226054101199	0.255176920126446	0.652232019717434
Merged-chr2-180040520-4	chr2	180040022	180041022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011969, intron 1 of 6)	intron (NM_011969, intron 1 of 6)	1942.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	6.16058148523986	6.38616316429954	6.28155663837237	6.54047650941183	6.84147900382774	6.59883300563483	0.642811927311133	0.0205217362707774	0.164173890166219
Merged-chr10-81250047-2	chr10	81249547	81250547	+	681.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001034895, intron 16 of 17)	intron (NM_001034895, intron 16 of 17)	-2888.0	NM_001285855	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	1.63319067968518	1.56860667461589	1.78803637101066	1.40748506070846	1.4377934780719	1.52028464300314	-2.53428406841006	0.043401699110467	1
Merged-chr6-97456433-4	chr6	97455927	97456927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2859.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.19278738812645	8.34929371690971	7.83329630056205	8.08792958994432	8.17854866540501	7.78400082715787	-0.163863108673673	0.515941087381818	0.844007195495258
Merged-chr11-69420364-4	chr11	69419872	69420872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6697.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	7.62648382833747	7.57656047924106	7.19773083820603	7.1588032713477	7.36021069094962	7.14076016156147	-0.384022255811302	0.129821001572385	0.482001958807507
Merged-chr1-107497027-4	chr1	107496537	107497537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14386.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	4.48310674261688	4.57940309143181	4.24096674648512	4.49204794080054	4.14286308504981	4.00127386932786	-0.565138976335019	0.247658246679117	0.644638139008226
Merged-chr4-48279688-4	chr4	48279224	48280224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	-36.0	NM_010569	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	6.78169921085821	7.10306123929849	6.84259439866599	6.9608757041344	7.0061512550976	6.58840742559223	-0.0699129843576663	0.798843473195608	0.952063885260145
Merged-chr5-21190556-2	chr5	21190056	21191056	+	702.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	4289.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.04632542530644	4.9704142471181	5.35327099544324	4.82607502011407	4.70824084256634	5.33162622363799	-0.330177711899617	0.430485689651678	0.796279860940263
Merged-chr9-35116932-4	chr9	35116419	35117419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-55.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	7.55420610139427	7.520756157625	7.77580890963819	7.28223159640837	7.4791562810352	7.5897122121472	-0.237660401384576	0.317346378583455	0.711242432534033
Merged-chr11-6525524-2	chr11	6525024	6526024	+	780.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_045893)	TTS (NR_045893)	3236.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	4.34748883565351	4.03164676590048	4.5047326804102	4.06202219802335	4.04168696365138	4.32978801614937	-0.434845329999558	0.378117247117326	0.760495811314425
Merged-chr10-42678889-4	chr10	42678400	42679400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172416)	promoter-TSS (NM_172416)	-16.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	7.20217691180803	7.563179415044	7.01032072329168	7.11505504300439	7.05695621239454	6.9098433817622	-0.383470215058571	0.153918275318606	0.523087753015605
Merged-chr9-88858970-4	chr9	88858466	88859466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037982)	promoter-TSS (NR_037982)	-96.0	NR_037983	319673.0	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA	4.55085341685452	4.78220655603089	4.71282188454578	4.3356519409392	4.60284190692051	4.62260359786927	-0.381368865899098	0.371712995321544	0.755815136565724
Merged-chr8-25445291-4	chr8	25444819	25445819	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-73440.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	3.80833049289285	3.88018043482577	3.85837907259032	3.64806600894247	3.3620711629643	3.72754402353388	-0.923733054162043	0.100331785547977	0.42242610999727
Merged-chr17-80083429-4	chr17	80082935	80083935	+	936.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21167.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	5.62253320320567	5.55857886343672	5.66228601221996	5.46879333313493	5.42327902567652	5.72391059244107	-0.147133092635274	0.652609579481996	0.902986290245403
Merged-chr7-25249368-5	chr7	25248884	25249884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010155, intron 1 of 3)	CpG	1374.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	6.98907864804472	6.89534802840596	6.98559699372875	7.09494486651546	7.04639747580917	7.21837230417096	0.245160822098528	0.305959382201853	0.702020471196356
Merged-chr2-180044373-2	chr2	180043873	180044873	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1890.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	3.42344170179783	3.39083637207442	3.40510086580267	3.50139192541303	3.38829156910782	3.63562676607338	0.369875479219795	0.525560934847967	0.849027787811941
Merged-chr13-58114006-2	chr13	58113506	58114506	+	752.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362415)	promoter-TSS (NM_001362415)	-359.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	2.45674266378377	2.3538521774438	2.27418773411166	2.45889857566394	2.31229951436649	2.5458109010015	0.453225435186313	0.58720955314091	1
Merged-chr11-115051366-4	chr11	115050855	115051855	+	890.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172050)	TTS (NM_172050)	-3060.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	3.61476157447	3.77524208390755	4.05401814227156	3.96867686772349	3.98652416325044	4.12156492147855	0.637231581989023	0.225887858143499	0.620790596836024
Merged-chr19-12567170-4	chr19	12566676	12567676	+	769.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6334.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.1729305651557	4.17639695439382	4.6828232390392	4.71957150373722	4.7673070574852	5.14406389681303	1.28131286799426	0.00570213250551131	0.0671663422308303
Merged-chr2-160374422-3	chr2	160373919	160374919	+	900.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7354.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.62195440497683	4.1457538826752	4.40069685572027	4.76926205134032	4.32785084869713	4.7129917016016	0.509399401965691	0.281991322544824	0.679908771156903
Merged-chr5-139282414-4	chr5	139281909	139282909	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	28912.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	3.55311982717907	3.20925764245338	3.33745941260382	3.41699902539017	3.3089641096665	3.86541054963839	0.619665893411865	0.333908357691994	0.724647993058489
Merged-chr10-68446043-3	chr10	68445543	68446543	+	964.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95832.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	5.12969231288315	5.49956109267712	5.17580589206088	4.91736080226262	5.41555560129417	5.10232801295731	-0.225073567523536	0.566099868912603	0.867186733679279
Merged-chr11-69395007-2	chr11	69394507	69395507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	339.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	7.52960252920193	7.52291900858424	6.95726379632081	7.09114693426202	7.30600392043731	6.72691572776009	-0.443919213513678	0.137033338643544	0.494589660876726
Merged-chr1-91039934-2	chr1	91039434	91040434	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-13510.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	2.86311533943204	3.09516243890539	2.81275420777409	3.0380322816778	2.77121044621931	3.12860099668111	0.231768951371277	0.749054493555344	0.937140288382646
Merged-chr16-55837204-2	chr16	55836704	55837704	+	899.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	(CAAA)n|Simple_repeat|Simple_repeat	1437.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.54749302716187	3.38313702496868	3.50543846818086	3.63164797581025	3.38073343525847	3.2257100759579	-0.194808218947572	0.749833074479276	0.937463855381525
Merged-chr8-25187701-4	chr8	25187245	25188245	+	796.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	13797.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	3.56068805288967	3.71999155424444	3.69388862148476	3.70784580913922	3.81884964304774	3.65791252789369	0.257206093852907	0.635398963192755	0.89649427032154
Merged-chr12-85975002-2	chr12	85974502	85975502	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	L1MB3|LINE|L1	104039.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	3.90478992136287	4.01848166233664	4.08004132889848	3.47035636834926	3.93590357074663	3.96324887889702	-0.586426565938022	0.293171392649636	0.690196017357506
Merged-chr1-166138340-4	chr1	166137847	166138847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8126.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	4.94328887489952	4.97572607306152	4.79865943415613	4.50506269074877	4.24745925968117	4.2549089248263	-1.38917374379354	0.00119280540480104	0.0206600649714165
Merged-chr5-105519277-4	chr5	105518783	105519783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133897)	promoter-TSS (NM_133897)	-188.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	7.85481266337487	7.91715224556045	7.56740610497733	7.15001056644051	7.15745263087033	6.98759530051902	-1.01227503955717	2.61568459132396e-05	0.000917562746521435
Merged-chr9-96517654-4	chr9	96517162	96518162	+	896.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38987.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.59216108578915	3.58049856022842	3.66857855621207	3.44519539946687	3.83211830988933	3.83770730642836	0.362081356355811	0.522762828637561	0.847733418668009
Merged-chr17-27571450-4	chr17	27570924	27571924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20A2|LTR|ERVK	-5697.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	5.80510088228667	5.89318810012487	6.21137535821983	6.09714710376116	5.75635737373183	5.93015023163591	-0.06927976872593	0.828181962720722	0.959634657485947
Merged-chr15-96631372-5	chr15	96630894	96631894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	L1M2|LINE|L1	10568.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	5.9805751837234	5.74927102596802	5.90622419551969	5.86639529238187	5.98734108476087	5.7668061308137	0.00777116659545726	0.979744418765466	0.995332945386782
Merged-chr17-35239790-2	chr17	35239290	35240290	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-1956.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	4.31874957859486	3.99094228216664	4.07209722960106	4.0172671292693	4.15957890397787	4.32041650937514	0.0813024125425828	0.868460308877896	0.969652123135977
Merged-chr9-55326759-4	chr9	55326271	55327271	+	982.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357568)	promoter-TSS (NM_001357568)	-142.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	4.03856212304736	4.01266145234465	3.84560680648746	4.031409739871	3.4650244265729	3.58308035469877	-0.800069925239206	0.1671219405101	0.54278714822368
Merged-chr15-82128697-2	chr15	82128197	82129197	+	965.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 1 of 5)	MIRc|SINE|MIR	722.0	NR_137170	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	5.78651116793913	5.60145223783033	5.25439750158047	5.92290716020195	5.78916719247296	5.69458336930412	0.416064133749634	0.223444593882933	0.618138764805209
Merged-chr3-67556298-2	chr3	67555798	67556798	+	717.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-26470.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	2.35151038057362	2.41926367325536	2.31014991010535	2.44800891359911	2.48055036266196	2.64148436708296	0.989209785784627	0.227647560979956	1
Merged-chr2-69885962-2	chr2	69885462	69886462	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	-347.0	NR_110977	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	5.6209529779108	5.85052240710369	5.92713268346049	5.67614734217303	5.99300090101503	5.87030859123837	0.10302905986375	0.746381484665019	0.936300236930265
Merged-chr9-70833265-4	chr9	70832766	70833766	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101542.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.42992138164337	6.14865166701996	6.44226935379163	6.66940209756627	6.38739990139277	6.31126738471535	0.207439002039584	0.47322485512227	0.820796984658325
Merged-chr9-89293516-3	chr9	89293023	89294023	+	704.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	82139.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	2.67260597255932	2.41266038208568	2.63140598160972	2.35785241535151	2.48605501513687	2.51722424257819	-0.721735937790417	0.375017217910831	1
Merged-chr8-105900404-4	chr8	105899899	105900899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173432)	promoter-TSS (NM_173432)	-75.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	7.5099596871603	7.74576014193214	7.26730754851613	7.57881019034762	7.40225464181523	7.13462984376232	-0.204760208568947	0.439248675416731	0.801063133660301
Merged-chr10-98893734-4	chr10	98893284	98894284	+	886.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20858.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.93455736890764	5.84242061157847	5.59680272407427	5.58326661588317	5.75949139722723	5.23868156476784	-0.44834574400406	0.199749258483314	0.588352275982348
Merged-chr2-28495237-4	chr2	28494734	28495734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_I-int|LTR|ERV1	-1657.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	5.97085656314955	5.97989551771814	5.87763521298068	5.89088550089364	5.96873053554514	6.12064198543794	0.076157248895733	0.796098631734439	0.95140420098761
Merged-chr2-163761601-4	chr2	163761087	163762087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11348.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.33609698053419	6.36718273543677	6.30572214889564	5.53126778050164	5.97323080394994	5.69855245472357	-0.992224010738315	0.001496125665447	0.0246719277077732
Merged-chr2-129597278-10	chr2	129596823	129597823	+	965.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1861.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	7.62541772323142	7.63504357335624	7.70371854459636	7.70681875462063	7.76284729772999	7.72522877111902	0.115261077485295	0.590745455356009	0.877301111216348
Merged-chr8-120564035-4	chr8	120563546	120564546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	25029.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	7.98265889423052	7.60222310498555	7.73706763706817	7.74094497701041	7.79722882415442	7.75889482001739	-0.0274382338882341	0.905697007677326	0.97846321234504
Merged-chr5-123864224-5	chr5	123863684	123864684	+	904.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_030701, exon 1 of 1)	3' UTR (NM_030701, exon 1 of 1)	1332.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.7536170993765	6.56300905339563	6.34827973238682	7.08616649912006	7.3142338991807	6.95537680378065	0.863229280185156	0.00163297872976565	0.0264351934136849
Merged-chr1-74248937-4	chr1	74248427	74249427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	12410.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	7.35089452617763	7.45749243229797	7.4338489217533	7.44535740451884	8.06883713707859	7.65773509162628	0.501036717691579	0.0566660633004143	0.306870796947665
Merged-chr3-121630800-4	chr3	121630293	121631293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12692.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	4.45170466985699	4.16673327973196	4.28257688506837	4.64827449669707	4.78236432502581	4.8776917802113	1.14066403037395	0.00891033580083762	0.0929086743503881
Merged-chr5-29435611-2	chr5	29435111	29436111	+	551.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	944.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	5.32634093221501	5.72056300077879	5.34743630663508	5.47201363208777	5.47058741724168	5.44231266444557	-0.0472738870731847	0.891555161696235	0.974819081679788
Merged-chr5-125141682-2	chr5	125141185	125142185	+	911.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	37529.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	5.06991068039321	5.30304854377573	5.04088510141351	5.29101861119178	5.12962525258836	5.45475665586539	0.280582604170287	0.443922297492709	0.803884349333946
Merged-chr14-40927205-2	chr14	40926705	40927705	+	591.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	21004.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.49193104112085	3.46709302447471	3.49389372285644	3.17915570428673	3.05300417524441	3.10644835114123	-1.56966930729143	0.0136398660838703	0.124585073723389
Merged-chr8-79679204-2	chr8	79678694	79679694	+	707.083374	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	32546.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	3.42728097927993	3.31232246292173	3.46580042839106	3.46799047699968	3.36871957127839	3.73881750928251	0.465665576477907	0.434211072314419	0.798241587091421
Merged-chr11-34827992-4	chr11	34827504	34828504	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027411, intron 2 of 11)	Lx7|LINE|L1	5637.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	5.78043102366797	6.12030783915885	5.16858410485804	6.09286871385825	5.78330423592964	5.45390987807863	0.08584670432641	0.835650384740739	0.961787999211487
Merged-chr8-106416588-2	chr8	106416088	106417088	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011764, intron 1 of 3)	B3A|SINE|B2	1249.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	6.23820017575973	6.07367717505847	6.20641603771825	6.3152857449465	6.61246273602953	6.32757730310831	0.434662643163834	0.126465545746662	0.475355519288444
Merged-chr9-105396295-1	chr9	105395795	105396795	+	1000.0	f1_balb.idr	intron (NR_152139, intron 1 of 5)	intron (NR_152139, intron 1 of 5)	933.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	6.46629652731577	6.76818160055015	6.52625350299011	6.43742664058923	6.71915064268352	6.18607304822334	-0.186252795344087	0.531832804693367	0.851833378497126
Merged-chr5-140758824-2	chr5	140758324	140759324	+	929.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34697.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.36620314287714	2.44854061384526	2.53600450324075	2.25250545001301	2.0147220209758	2.35790493737564	-1.70898790940779	0.0769565281763396	1
Merged-chr4-70535048-4	chr4	70534548	70535548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172694)	promoter-TSS (NM_172694)	-120.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	5.26157334238572	4.83256659920786	4.90310975225872	4.87295488668201	5.01298082089676	4.96874794458576	-0.138820489471844	0.724761031536378	0.929459725191008
Merged-chr17-29033885-3	chr17	29033376	29034376	+	847.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	B1_Mm|SINE|Alu	1216.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	5.91242281381378	6.08218337923244	5.69149726971982	6.0414582018493	5.86246075254393	5.51507493397593	-0.141746218417794	0.672548744060472	0.91091961936035
Merged-chr3-135414097-2	chr3	135413597	135414597	+	549.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	9336.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	4.06469106419298	4.37327436873422	4.20190285516835	4.37490609036009	4.35421083452209	4.22355293523851	0.269735624812333	0.562406760651829	0.865738912855472
Merged-chr1-64539248-2	chr1	64538748	64539748	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	6444.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.6029966321162	3.79215163542324	3.56344317617712	3.24906693040707	3.21481948159532	3.29422783542007	-1.60389256860492	0.00847151902833013	0.0897378253866452
Merged-chr2-136891116-3	chr2	136890656	136891656	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028201)	promoter-TSS (NM_028201)	-62.0	NM_028201	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	8.1709974549194	8.27896995137193	7.90593635806868	8.19776275306689	8.29744656151809	7.86198652064957	0.00801557370481602	0.973647840371302	0.994039095662068
Merged-chr2-132247768-4	chr2	132247262	132248262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	26.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	8.03779635316756	8.00011951854805	7.77360618001543	7.81684579321122	8.15298877421449	7.52152868818147	-0.111855612824158	0.667606929527812	0.90879890451381
Merged-chr5-115535842-4	chr5	115535338	115536338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-23629.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	7.13846190956922	7.28836609763438	7.35178703125823	7.11742522880436	7.42668680582628	7.27601560253134	0.0367887877981881	0.879970612276062	0.972364498183256
Merged-chr19-7558928-3	chr19	7558417	7559417	+	927.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362425, intron 2 of 4)	MER97c|DNA|hAT-Tip100	1432.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	5.31661879584129	5.62963315704887	5.60602626241837	6.1909997695445	6.11467419345418	5.90532347131695	1.00345979183386	0.0016792868340044	0.0269905541595206
Merged-chr12-119157904-4	chr12	119157410	119158410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80366.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	5.85270033507263	5.98243141328411	5.5739208560087	6.2112842319474	6.50273129939491	6.11048924123499	0.802096785661885	0.0117171182084243	0.112361181501276
Merged-chr3-35932439-4	chr3	35931945	35932945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	-111.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	7.33187557377176	7.24636858627143	7.11631337197089	7.43907722628227	6.9978924310165	6.97032811368226	-0.121404156871249	0.646412301589034	0.90099114147517
Merged-chr7-80841553-2	chr7	80841053	80842053	+	790.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20555.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	3.72296199412955	3.38465207871961	3.43737407141089	3.75493805445536	3.58817776574806	4.061813416376	0.948369176769319	0.111867429519649	0.446760982743988
Merged-chr9-7244988-3	chr9	7244523	7245523	+	927.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27491.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	3.56466640488885	3.64884826376112	3.69112509261185	3.58129550007395	3.377983242636	3.85718148427089	-0.0837338097170411	0.885195823942397	0.973549591486895
Merged-chr13-44484098-4	chr13	44483591	44484591	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	44364.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.9725086788017	4.56514391058661	4.75857558702523	5.5927452996773	5.87655382853469	5.68205143850496	1.9208716264947	3.7965145888522e-07	2.31016884163133e-05
Merged-chr13-98316854-6	chr13	98316282	98317282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_137279)	promoter-TSS (NR_137279)	185.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	8.4374459597737	8.54057722337855	8.34050881379113	8.31220667176654	8.23240785631169	8.07239192544447	-0.324421966481018	0.125780443386063	0.474437113587777
Merged-chr13-26792036-4	chr13	26791542	26792542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21877.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	3.44121020992532	3.18421400162012	3.79482205326247	3.62050194338766	3.60542733392984	4.08380057327557	0.994555432289525	0.118484206439024	0.459921210483695
Merged-chr10-8913069-6	chr10	8912647	8913647	+	787.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-27077.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.98913728321855	5.77242457868666	6.14495604862182	5.99191019498929	6.15353272278908	6.32152380510695	0.325031766617057	0.287669459549124	0.685014682030254
Merged-chr10-19031153-4	chr10	19030654	19031654	+	976.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15744.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	3.30948089670961	3.28461496685122	3.43587444039741	3.58644212980221	3.26966641930565	3.66219880111063	0.637615150764674	0.295147792218033	0.691990077927385
Merged-chr1-131245163-4	chr1	131244619	131245619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	59.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	5.14708980907805	4.95908735016737	4.64395329768347	4.9179650851967	4.89322124414377	4.7123063623506	-0.209315418617074	0.608693301318859	0.885006356798728
Merged-chr4-109126267-3	chr4	109125770	109126770	+	850.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	Charlie29a|DNA|hAT-Charlie	-8234.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	3.0690177372881	2.71898085511405	2.77293832030912	2.82653241382635	2.89301994320016	3.14445032495435	0.434260313609164	0.55620624247652	0.86357390983939
Merged-chr8-120509391-4	chr8	120508982	120509982	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	20616.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.55247075279282	5.54806610495272	5.72517277917186	5.67185641139781	5.39243320085078	5.42690052379445	-0.19292743524941	0.56052297769108	0.865261302076164
Merged-chr16-91405242-2	chr16	91404742	91405742	+	979.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-993.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	7.45204459263714	7.41183634745011	7.3179093523544	7.404206337221	7.70089522262227	7.23284321854784	0.108758571262829	0.662830371853088	0.90684977442783
Merged-chr4-155869043-2	chr4	155868541	155869541	+	817.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	399.0	NM_024472	79554.0	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	4.67621562286727	4.62707231096178	4.63264336836085	4.4843424897493	4.47935202530179	4.30655274955587	-0.526021935446166	0.2152019826565	0.608548056852407
Merged-chr12-32820262-4	chr12	32819767	32820767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-68.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	8.00834045777665	8.08345334626645	7.59202161943042	7.77112854597721	7.97105221575352	7.37738650118075	-0.256752334353355	0.348078651138488	0.735982909356061
Merged-chr11-62470631-4	chr11	62470135	62471135	+	950.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 1 of 6)	L1MB4|LINE|L1	12175.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	2.9030142126959	2.73402607456357	2.96421001988385	2.94777284956875	2.68551070731667	2.79442513760692	-0.279133669887737	0.700570202289755	0.920931647342565
Merged-chr9-99110388-3	chr9	99109871	99110871	+	653.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	29840.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.90208616093942	5.97558503074251	5.97785470671428	6.16130366221745	6.37658445063014	6.40697452021592	0.623767373553536	0.0290995729277158	0.204837770984063
Merged-chr7-7133091-3	chr7	7132651	7133651	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029584, exon 4 of 4)	exon (NM_029584, exon 4 of 4)	3604.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	4.23664759982478	3.99259633702417	4.26525932094795	3.90392187123405	3.55304626800712	3.92107839601391	-1.14195088233344	0.0324823638732734	0.219145800685309
Merged-chr6-17590446-2	chr6	17589971	17590971	+	654.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46539.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	3.89686544463781	3.56685832209977	3.85585345647927	4.80336474760116	4.83460114076228	4.52057231957855	2.72541607364842	1.44493799498189e-07	9.87924409913336e-06
Merged-chr7-4137141-7	chr7	4136642	4137642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033548)	promoter-TSS (NR_033548)	86.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	8.28608056260804	8.45901291726332	7.83476301208687	8.14177693621356	8.26849819863456	7.78417220973775	-0.196134535926257	0.465718820110817	0.817146354802119
Merged-chr2-22744388-4	chr2	22743900	22744900	+	907.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29927.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.74000919976877	6.676091653743	6.94968793376937	6.87650917738339	6.84972835477488	6.91206698321452	0.143170779355842	0.569687890535014	0.868895247713032
Merged-chr1-155902209-2	chr1	155901712	155902712	+	900.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001039184, intron 23 of 37)	intron (NM_001039184, intron 23 of 37)	71043.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	5.48422270713823	5.75858543061211	5.56961025701516	6.87458830975836	7.10609111670517	6.34269263998173	2.02140050761932	1.09744677927286e-09	1.20311398695304e-07
Merged-chr5-125405141-4	chr5	125404643	125405643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15126.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	7.92355127776193	8.2771009471045	7.72441511725988	8.04288697424143	8.41259759007603	7.81681089852063	0.169917850345775	0.536556257522181	0.854055228150433
Merged-chr4-33249376-3	chr4	33248868	33249868	+	800.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033225)	promoter-TSS (NM_001033225)	-581.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	7.19777275087761	7.15624841201607	7.14876464313175	7.46215131822285	7.63896738347148	7.25564806868277	0.448367163363266	0.0632333043877999	0.327453123693058
Merged-chr10-111544128-4	chr10	111543634	111544634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37848.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	4.50866063137457	4.36125144814956	4.48607945330616	4.85178636221995	4.32715749362833	4.42239613947741	0.255326249177682	0.576376304506976	0.871585692229598
Merged-chr4-117191912-3	chr4	117191419	117192419	+	874.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-9295.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.37184405909219	6.7615526397333	5.91008616074447	4.43204337694649	4.06414352087018	4.6768127702466	-4.45495687163493	8.75318504710305e-21	6.44544266725089e-18
Merged-chr14-60988308-4	chr14	60987756	60988756	+	807.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49731.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.73794420688576	3.67839980440409	3.92428890871869	4.81083168768123	4.79168785594284	4.60566150297042	2.79057744844638	2.38686261065704e-08	1.9920367513295e-06
Merged-chr5-27792540-2	chr5	27792042	27793042	+	677.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-992.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	5.6758231722552	6.42104177615104	5.90544949084294	6.28868951226792	6.28636505712078	5.91690483235952	0.223553267406619	0.52690839963615	0.849703362861444
Merged-chr1-131980744-1	chr1	131980244	131981244	+	760.5	f0_balb.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	10135.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	4.6371539380092	4.70686393680826	5.32435654154588	4.72128845610956	4.46904817458003	4.93783878816363	-0.454024841506185	0.323712725850999	0.716941402518231
Merged-chr11-21241512-4	chr11	21241016	21242016	+	800.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	2484.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	5.27314798187418	5.04967008561324	5.27704870420264	6.13874231996615	6.09657178390598	5.70665637897582	1.50261825721202	8.95745713191569e-06	0.000363576630747532
Merged-chr2-126677122-2	chr2	126676622	126677622	+	564.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271470)	promoter-TSS (NM_001271470)	-785.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	4.46627270754805	4.35875447239155	4.72352420654849	4.67941021102147	4.77633620597774	5.06127905980931	0.77300225048077	0.0707502504659589	0.348796471191581
Merged-chr5-121251966-4	chr5	121251371	121252371	+	984.28125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	31652.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	7.08307842969628	7.07481581674555	6.85501893364483	7.31013418197123	7.43523888647313	6.91363553392362	0.353668307502739	0.185334875916146	0.569470877644115
Merged-chr11-70788680-2	chr11	70788180	70789180	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23881.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.34633223379748	6.30627561700936	6.61942454732173	6.37874793868561	6.48505015882699	6.4218855971318	0.0164658960990362	0.952275715742344	0.989068549972429
Merged-chr1-16217946-1	chr1	16217446	16218446	+	557.0	f1_c57bl6.idr	Intergenic	Intergenic	112064.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	2.64139151910623	2.76221376747547	2.84101881957746	2.80045706296613	2.59312421185381	2.91350096941356	0.114197030069781	0.878083715288347	0.971816559882595
Merged-chr4-43383406-4	chr4	43382915	43383915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1433.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	7.08253988780781	7.17060419392196	6.94377447298149	7.26965359078967	7.67834855369105	7.00215003418392	0.428608584047384	0.126697301568377	0.475633616355245
Merged-chr5-124112840-2	chr5	124112340	124113340	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025671, exon 2 of 7)	exon (NM_025671, exon 2 of 7)	519.0	NM_001347478	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	5.79885862253538	5.76332929626802	5.53303311762409	5.52850727060335	5.78595244405692	5.81218522968684	0.00406915635931632	0.989961555006258	0.997671181117432
Merged-chr6-114907657-3	chr6	114907171	114908171	+	667.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	14150.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.23406611097486	5.33578519307645	5.59428236887052	5.66036940686528	5.71063854250573	5.42737850918423	0.435766681124234	0.202532532790249	0.59252027125208
Merged-chr7-142342021-3	chr7	142341516	142342516	+	977.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177265, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	30243.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.70540756997738	4.24590837446315	4.52977113450655	5.33526970343382	5.70022986808454	5.6436802208809	2.28867107977962	3.79802016173103e-08	3.0212778357296e-06
Merged-chr19-15925073-4	chr19	15924582	15925582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	-23.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	4.63570355700836	4.35368539484301	4.27979019875389	3.99516394048928	3.7138461234657	3.7275314338011	-1.81107482916752	0.000508648007300933	0.010623389405496
Merged-chr19-32911502-4	chr19	32911021	32912021	+	718.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	153944.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.99365112377384	3.73493379513229	4.34188331650175	4.72646240926776	4.66080331180383	4.99860711856833	2.01035414918171	5.8589998815281e-05	0.00179895078281251
Merged-chr15-28374608-4	chr15	28374122	28375122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 52 of 78)	intron (NM_133365, intron 52 of 78)	170856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	5.59077267931498	5.73073414328356	5.64179705129971	5.81520920457805	5.88317591928312	5.50103413770428	0.181782397460865	0.574982880050684	0.87094931637326
Merged-chr4-56802406-4	chr4	56801869	56802869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-38.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	6.97011483325786	7.45337646811885	7.17328857839893	7.33453031421698	7.25278773298186	7.05017746404513	0.00629521160804744	0.981009192826083	0.995657460731624
Merged-chr9-83575571-4	chr9	83575063	83576063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	27225.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.35500267511428	6.28906851156696	6.02928033644116	5.57349086147984	5.56649217732787	5.29675955512362	-1.31961172219504	4.06493607945395e-05	0.00132641255411453
Merged-chr6-148761605-4	chr6	148761113	148762113	+	936.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	69854.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	3.58491067870603	3.73313602941568	3.49399714990771	3.77918599613166	3.5186228508178	3.78045589795202	0.270830897980533	0.63216767301715	0.895435008062156
Merged-chr12-8519632-4	chr12	8519103	8520103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19594.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	7.92739912977326	8.27954776327735	8.03132896001419	7.93696670258015	8.05994673960172	7.72125539270959	-0.242004479696375	0.306866352565509	0.703091920100449
Merged-chr15-95823813-2	chr15	95823313	95824313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_155276)	TTS (NR_155276)	6259.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.85576330320185	7.47672680603105	7.33632779165199	7.68030635601746	7.85256802437292	7.23517000477952	0.0618885666674752	0.827442081240671	0.959467071709035
Merged-chr14-78631104-3	chr14	78630611	78631611	+	916.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104044, intron 1 of 27)	B1F|SINE|Alu	-1821.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.74127576745228	3.88961852855388	4.15636617483759	3.80346843678158	3.75633195671998	3.95485104851007	-0.300422468480696	0.570626951821235	0.869253690275099
Merged-chr5-140815221-3	chr5	140814720	140815720	+	711.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	15211.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.05999730260026	5.05656998918553	5.30031525341449	5.08233676312426	4.84377690824588	5.24310561642787	-0.171793508485882	0.651619219136765	0.902867999699131
Merged-chr8-106210518-2	chr8	106210018	106211018	+	668.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	415.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	6.78619960720967	7.03073789045366	7.06890122132889	6.9432059949146	6.94257264014101	6.92715142272861	-0.0397877965072939	0.873031227636154	0.970371929331986
Merged-chr15-80014418-11	chr15	80013926	80014926	+	749.674255	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011057, exon 1 of 7)	5' UTR (NM_011057, exon 1 of 7)	382.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	5.72385431352889	5.75741274832533	6.14330960237578	5.78168298220501	5.21910458090158	5.91099846848018	-0.399498725944902	0.282020124451964	0.679908771156903
Merged-chr11-84879405-2	chr11	84878905	84879905	+	621.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	790.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	5.07495677735643	5.59637753633197	5.50895232902095	5.34894125405873	5.39136805203242	5.05813626519031	-0.252497922079757	0.506434850210894	0.83842879061576
Merged-chr15-88821704-2	chr15	88821204	88822204	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029720, intron 4 of 9)	intron (NM_029720, intron 4 of 9)	2058.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	3.29332922362925	3.17957271840559	3.50741160729146	3.49420372027475	3.52702154410732	3.6790463362273	0.910085517801994	0.129568182808751	0.481557502016732
Merged-chr11-116868322-4	chr11	116867847	116868847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	14347.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	7.62493558432098	7.89917515435326	7.32382199056012	7.49009839456465	7.82112505583409	7.25992275095423	-0.131812575735575	0.639932172142445	0.898255496259518
Merged-chr15-100405619-4	chr15	100405109	100406109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146161, exon 8 of 16)	exon (NM_001146161, exon 8 of 16)	17446.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	6.99205773559705	7.28801871352358	7.21965953472721	6.70821421329963	6.8000842299766	6.87970605658139	-0.576028820535822	0.0220565522315023	0.172326910617732
Merged-chr16-24879326-4	chr16	24878832	24879832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	157477.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.47921514547878	6.47041454563804	5.94710309663379	5.95477157845201	6.12407238904808	5.7397039885029	-0.629853011624155	0.0531329959392339	0.295408948691152
Merged-chr10-80293001-2	chr10	80292501	80293501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009091, intron 2 of 3)	B1_Mus1|SINE|Alu	492.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	7.31705795599716	7.2894272208861	7.04431243819075	6.97585502548026	6.8850139623702	6.60523126141775	-0.590594342330489	0.022945609511665	0.176930615906461
Merged-chr2-60284799-2	chr2	60284293	60285293	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-309.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	6.91082956740163	7.02054935582736	6.97330518652478	7.15919713928273	7.24772036447892	7.3883101130323	0.445899050706614	0.0621406985930376	0.323850886166195
Merged-chr8-117341957-2	chr8	117341457	117342457	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-7213.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.37702018124091	5.25182632214129	5.56138677796267	5.5881865017917	5.51547791290929	5.59641539756475	0.329902923471883	0.321892943882604	0.715327005443768
Merged-chr8-82370839-4	chr8	82370328	82371328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	31758.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.06488535007245	6.25641641422091	6.10159898949256	6.21042003410644	6.54153177753807	6.34850132845043	0.388776191707743	0.177291618640274	0.55822004025504
Merged-chr10-52256040-3	chr10	52255550	52256550	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347444, intron 1 of 9)	intron (NM_001347444, intron 1 of 9)	22431.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	3.52682193486491	3.63325265277985	3.58422155722758	3.26731396571995	3.21604755499472	3.26536915327728	-1.3168676213272	0.0289609054529445	0.204183953645874
Merged-chr18-3386895-2	chr18	3386395	3387395	+	721.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_029402, intron 1 of 20)	B1_Mus1|SINE|Alu	3670.0	NM_029402	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	3.08381213159133	3.10416093867779	3.33183404580265	3.45109862807743	3.49097714005113	3.2897364560807	1.00848470199141	0.107912480258282	0.438735808719558
Merged-chr5-43845231-3	chr5	43844707	43845707	+	950.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23602.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.80403804378444	5.67028348978648	5.56044552456975	5.62966523259508	5.25008693943256	5.9465853183123	-0.111759985380858	0.757675896002735	0.939883186830738
Merged-chr19-10280747-2	chr19	10280247	10281247	+	959.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	24130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	5.77565838073632	5.82352836299452	5.57320955668097	5.45986308326891	5.61032587029812	5.1047354370949	-0.577826677018886	0.101872910565237	0.425769307464577
Merged-chr11-69041090-4	chr11	69040590	69041590	+	993.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4547.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	6.57439729357599	6.55336969895415	6.47247916873733	6.64616898690062	7.10655978364348	6.81511815995395	0.536650348364728	0.0502403766076322	0.285234801908287
Merged-chr6-58832947-4	chr6	58832493	58833493	+	806.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028705)	promoter-TSS (NM_028705)	-707.0	NM_028705	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	3.22274906386407	3.13922567679181	3.12975423894454	2.99208695125827	3.0951230993497	3.08378967633568	-0.475812657587038	0.463803129143549	0.816038286358001
Merged-chr17-46644880-3	chr17	46644383	46645383	+	811.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357130, intron 1 of 15)	intron (NM_001357130, intron 1 of 15)	1197.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	4.70361496989486	4.51214977221196	4.28499095486019	4.27282214221227	4.25215929186197	4.30712993387892	-0.634516059350736	0.161950006082698	0.535193761745733
Merged-chr5-97084245-1	chr5	97083745	97084745	+	718.0	f1_balb.idr	intron (NM_198422, intron 6 of 6)	intron (NM_198422, intron 6 of 6)	27351.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	2.41575707594253	2.18776176165021	2.54461653842874	2.6189522781822	2.36973634400746	2.74074812131765	1.17356840144831	0.178897122749129	1
Merged-chr16-94594744-2	chr16	94594244	94595244	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	Lx7|LINE|L1	-16675.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.31805299030475	4.35150490441786	4.57093970900639	4.12568390995312	4.26107499083473	4.6359142272612	-0.163525966512784	0.728484255641629	0.930478966998914
Merged-chr1-152901873-2	chr1	152901373	152902373	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	772.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.00158737794109	5.55516500114186	5.82569483262174	5.97682088894141	5.78705867592776	6.0047303523547	0.201842930158197	0.532541414872958	0.851971173271146
Merged-chr5-97007066-4	chr5	97006578	97007578	+	871.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	9389.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	4.96235462002577	4.88474196585568	4.41681421912733	4.951526100892	4.58964924974954	4.62471829233793	-0.124928023056444	0.778677564732593	0.945520893795831
Merged-chr7-28807058-4	chr7	28806544	28807544	+	957.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3846.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	2.95939148568412	2.75990069625477	2.84254881779926	2.81568413325835	2.58852965003593	3.03289988329638	-0.188331999378933	0.802182615927029	0.953161751100363
Merged-chr19-5613284-4	chr19	5612866	5613866	+	826.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3272.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	4.45007454576314	4.30236237003243	4.80945617927057	4.38814296338298	4.27116588691946	4.33070318332638	-0.504128089135847	0.274184715700053	0.671685022607599
Merged-chr9-107757566-3	chr9	107757073	107758073	+	728.3222049999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153191, intron 5 of 23)	intron (NR_153191, intron 5 of 23)	13429.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	3.48938750090392	3.50725075196618	3.49055303352352	3.07905189241088	2.95653799774501	3.22900369178832	-1.78500425472539	0.00637204835646388	0.0729992454908167
Merged-chr14-120335164-1	chr14	120334664	120335664	+	540.0	f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	28712.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.06089322789871	2.94961601951224	3.25648737940999	3.13416842786159	3.03300561415402	3.3270404954506	0.327525666104547	0.622059960568104	0.890937721901588
Merged-chr10-80621474-2	chr10	80620974	80621974	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	5.73130090305926	5.66367254381687	5.46163211793951	5.86985687729685	6.22759702456024	5.52630209395635	0.525099281861999	0.13792816977215	0.496333880789271
Merged-chr13-97198395-4	chr13	97197894	97198894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010422)	promoter-TSS (NM_010422)	-37.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	5.91485167703782	6.0622845503727	6.06717470748328	6.02202746515425	6.02844516511124	6.08406278913431	0.0496935609170828	0.86311526871898	0.968190422117753
Merged-chr7-98334155-4	chr7	98333670	98334670	+	975.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12962.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	5.63105888509436	5.35687946459766	5.45435412158767	4.83301632236997	5.12189329003253	5.57101568857835	-0.565035220510201	0.151174565763769	0.518506648409409
Merged-chr15-17604546-4	chr15	17603982	17604982	+	873.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	765145.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	2.39965097730085	2.52685731606724	2.61972451501221	2.34776981191881	2.59986269585988	2.50595043815464	-0.143530922553492	0.860058809634111	1
Merged-chr4-53077656-2	chr4	53077156	53078156	+	585.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 19 of 49)	intron (NM_013454, intron 19 of 49)	65776.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	3.08393245350273	3.180058987129	3.06901049810306	2.9778797174995	2.94418390048788	2.95992922324752	-0.710637554445087	0.286334846211339	0.683634696330879
Merged-chr5-149247749-4	chr5	149247245	149248245	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17259.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	6.84338373412725	6.79930387838802	7.01138273392572	6.70769818521119	6.96141848912933	6.84966026716446	-0.0531953682816388	0.83466703108713	0.961378916719009
Merged-chr4-150864144-3	chr4	150863642	150864642	+	804.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	9072.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	4.0014970843421	3.59608075993725	3.65983941372844	3.72580002168825	3.65081746856496	3.67672945474897	-0.28486920705578	0.610145268706996	0.885428451824695
Merged-chr8-70601429-4	chr8	70600938	70601938	+	960.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 4 of 16)	CpG	6876.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	4.59786637576897	4.68605383178832	4.69408818253818	4.80121494057485	4.81724409350733	4.94374023848999	0.446311977135045	0.257842258583198	0.655300508619143
Merged-chr9-40744416-4	chr9	40743927	40744927	+	963.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-56846.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	7.39717045636425	7.29559641503963	7.12829739848838	5.72266746543363	5.46900169363104	5.56650622737387	-2.80661674405616	1.52427499130247e-22	1.71394423616616e-19
Merged-chr16-38758693-4	chr16	38758188	38759188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	16429.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.91792053984883	6.08920023465367	5.807859896123	6.22215868742176	6.21655526253523	5.97161418284941	0.339184299747538	0.257941177921699	0.655431765745382
Merged-chr11-97781235-2	chr11	97780735	97781735	+	803.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_028078)	TTS (NR_028078)	531.0	NR_028078	100302498.0	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	5.08804671343743	5.02702555619259	5.28379868105305	5.00199000084437	5.17321440159187	5.15927270750233	-0.0291235113599331	0.936389635724885	0.986037792257163
Merged-chr11-74650411-3	chr11	74649912	74650912	+	714.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	917.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	5.79770695433766	5.89124837659235	5.59769074924353	5.92514348657717	5.83075145157224	5.60232952992161	0.0421711630051125	0.895053793199753	0.975642051805398
Merged-chr17-21474875-4	chr17	21474379	21475379	+	869.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	-14109.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	5.01215449557067	4.81045457565047	5.04658400492279	5.32634009748185	5.18277130714307	5.21163200278127	0.600850912636457	0.100137800894757	0.421993726860012
Merged-chr1-155074160-2	chr1	155073660	155074660	+	579.833313	f1_balb.idr|f1_c57bl6.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	9104.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	2.32277246755213	2.28678260669632	2.63606009084662	2.29642564970647	2.24473517298938	2.1319689213185	-1.2849084662979	0.156771188481589	1
Merged-chr11-68657122-4	chr11	68656610	68657610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34805.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	6.39878232451737	6.15352206428914	6.45936693774094	6.14307609588823	6.3980667388442	6.82562903508743	0.226899138041374	0.472406603682152	0.820550293768681
Merged-chr6-56901221-7	chr6	56900567	56901567	+	874.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	819.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	6.92118242734413	7.24212261047913	6.53496205136982	7.25172792661259	7.68345437322589	6.93700886255225	0.592840109237599	0.0679438401014313	0.341125387507385
Merged-chr13-104132553-6	chr13	104131916	104132916	+	907.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144838, intron 8 of 10)	AT_rich|Low_complexity|Low_complexity	22675.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	5.31406240206968	5.40590170273542	5.73269392895328	5.59417789761056	5.83045505605197	5.52673205042828	0.342437773992823	0.319609397143565	0.713540438213725
Merged-chr12-110486233-4	chr12	110485723	110486723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	484.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	8.35890551682853	9.05000099456709	8.65694064465378	8.45815139110739	8.95249434191161	8.46689329112586	-0.09918450117626	0.721162536223224	0.928418800211379
Merged-chr19-11061042-4	chr19	11060551	11061551	+	905.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-10485.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	5.24930523870926	5.20986726025112	5.7907309599452	5.51435827478123	5.08794706972941	5.32555139432296	-0.225089768162983	0.56354982758796	0.865992481769395
Merged-chr11-23305418-4	chr11	23304910	23305910	+	981.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-1485.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	6.20901549449062	6.52412593144913	6.54724294315055	6.62579568063432	6.92347801346547	6.84108789791355	0.593223659565492	0.0323350784490854	0.218547413499431
Merged-chr4-141536764-5	chr4	141536245	141537245	+	811.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 1 of 14)	CpG	1852.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	5.90594777893477	5.39063790995029	5.9238468702545	5.71307393471415	5.5445196081252	5.58253678365118	-0.261388065383823	0.452085484761507	0.809286173636239
Merged-chr2-145814753-2	chr2	145814253	145815253	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	B1_Mur1|SINE|Alu	28637.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.32328936458857	3.97339260315111	4.25523237561907	3.93729444314149	3.99118234286316	4.7716470386641	0.251098655246909	0.652107962539909	0.902896807825606
Merged-chr8-128602104-4	chr8	128601547	128602547	+	899.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83607.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	4.25083444887635	4.41073404647108	4.63281833801877	4.46973163753018	4.23116516049645	4.50348904908045	-0.083833730557288	0.854046564825006	0.965896967163733
Merged-chr3-109130342-4	chr3	109129853	109130853	+	930.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	7204.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	3.49000382931126	3.90412431387795	3.59065553582257	4.23884565966163	3.730021396826	3.72146070552217	0.766442278601875	0.197021347732897	0.584870414852249
Merged-chr7-7171293-4	chr7	7170795	7171795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146179)	promoter-TSS (NM_146179)	-58.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	4.24240360477587	4.66678893185355	4.50695149286531	4.34252613777805	4.47578618767086	4.16420753731963	-0.363012985243723	0.439344527737448	0.801090064804651
Merged-chr13-18810198-4	chr13	18809700	18810700	+	907.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	92908.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	2.82255768833842	3.19761773432607	2.99151122961042	2.85748987232902	2.89724050594591	2.88117337398064	-0.650537856383241	0.360191620989482	0.746468561887568
Merged-chr1-191575055-1	chr1	191574555	191575555	+	673.0	f0_balb.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	489.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	6.49021654709382	6.87086461484719	6.74816623741996	6.56738063500283	6.72820410996989	6.86529518832584	0.0144438516393367	0.957925501269305	0.990000537228272
Merged-chr1-194991136-2	chr1	194990636	194991636	+	583.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14177.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.28218220290472	4.7170792937023	4.57852564588925	4.49811127901132	4.41908460781361	4.5640264981786	-0.121834493277738	0.78389963140984	0.947360539866523
Merged-chr4-63398678-2	chr4	63398178	63399178	+	689.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305432)	promoter-TSS (NM_001305432)	-438.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	5.22371681206535	5.08678818050858	5.0038221906264	5.02035185080623	4.67195621988944	5.13663025951303	-0.359291255491379	0.36094513606535	0.746938274913623
Merged-chr3-88140120-3	chr3	88139657	88140657	+	865.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	6.6899289870979	7.09944446376586	7.09044215901133	6.53620861090908	6.89936257595854	6.74858323890059	-0.35556028477885	0.20448736793563	0.595033569196988
Merged-chr7-100607533-4	chr7	100607033	100608033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163663)	promoter-TSS (NM_001163663)	-53.0	NM_024287	19346.0	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	7.49199823310212	7.78207038404505	7.49228666083343	7.73195915822137	7.73228196036713	7.30447173697993	0.0186968183895861	0.941373390999528	0.986966884208524
Merged-chr17-27911468-4	chr17	27910981	27911981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	2175.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	8.30304583076769	8.2841084074536	8.19226807326725	8.20309231176505	8.66575460799499	8.14588878356953	0.148888736722454	0.537711303704742	0.854779024899439
Merged-chr15-82148758-3	chr15	82148265	82149265	+	827.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	1496.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	3.99663220976237	3.79252078271504	3.63667754381901	3.94057049999827	3.82445799295484	3.8171500104222	0.118291636080835	0.824805742045602	0.958596193929081
Merged-chr19-5842416-4	chr19	5841989	5842989	+	911.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2989.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	7.34269831399125	7.12850780599547	6.81476455196689	7.10382781431276	7.1250914738394	7.00665796314348	-0.0627668006585775	0.811537136782687	0.955304895434479
Merged-chr19-57359832-2	chr19	57359332	57360332	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	1067.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	5.36843266864499	5.5745976892118	5.5039119554617	5.47442063337527	5.73712738568492	5.87458191062591	0.404605562823832	0.22619384820349	0.621140322788657
Merged-chr12-4430705-2	chr12	4430205	4431205	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010881, intron 1 of 22)	MLT1J|LTR|ERVL-MaLR	46477.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	4.36059483738893	4.12042329941842	4.54034695707339	4.57112824381724	4.46156395310854	4.64507517465614	0.546368516329579	0.22426802277642	0.6190426237005
Merged-chr19-6126409-2	chr19	6125909	6126909	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	B3|SINE|B2	1806.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	4.9228547081119	4.74279352491449	4.70024333375007	5.00437081447501	5.07853458457175	4.54776448597799	0.25541843897147	0.543212612942917	0.857545957833401
Merged-chr19-38931965-2	chr19	38931465	38932465	+	593.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008234, intron 2 of 21)	intron (NM_008234, intron 2 of 21)	975.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	2.25213976876112	2.31613493420679	2.54617644064705	2.10123254986663	2.21065686890009	2.24367499760965	-1.29857278218636	0.147817805417014	1
Merged-chr16-94590478-4	chr16	94589975	94590975	+	964.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	19568.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.19415074523109	4.18917656459588	4.2049563658455	4.11174957685989	3.8029271013582	4.31560704404636	-0.324894420778964	0.516991855014842	0.844460030891516
Merged-chr18-88838359-6	chr18	88837833	88838833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus1|LINE|L1	55874.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.4256485123979	3.54543875840295	3.93018764954078	3.62778727955371	3.72749490882339	3.85963058383449	0.326072824684039	0.572014777674397	0.869773807126863
Merged-chr12-51970503-2	chr12	51970003	51971003	+	733.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	818.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	5.9199449584064	6.09588280472163	6.13429332287442	6.47414379370186	6.86824360573405	6.45270240156607	0.965749372664019	0.00109258369623032	0.0192977508375998
Merged-chr11-103992849-4	chr11	103992358	103993358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25987.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	4.59224290731152	4.24824263395124	4.54000876397271	4.33014026035383	4.10838894536653	4.16870901321296	-0.693455598915656	0.13721988253833	0.495027571456897
Merged-chr13-9180463-4	chr13	9179944	9180944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	86563.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.35318388200816	5.59704652283432	5.09049809885021	5.69491198816152	5.57721435853221	4.91438215205916	0.148671868385108	0.720042971600316	0.928011269666193
Merged-chr7-118490758-4	chr7	118490251	118491251	+	884.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1224.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	6.63247794558267	6.91685510408379	6.77431076604613	6.82630731096643	6.98924104462387	6.77092519147778	0.14062048963966	0.587608855860707	0.876017619062143
Merged-chr3-22080788-1	chr3	22080288	22081288	+	573.0	f1_balb.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	4136.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.14678738550204	3.0360729921912	3.32006096480653	3.0974110376846	2.9487293241325	2.92848395150419	-0.778637416797457	0.249334362293304	0.646251553365766
Merged-chr13-35783784-4	chr13	35783278	35784278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	42376.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.79918572396152	6.03640693036262	5.79830353806608	6.0114998464539	6.09781329428237	5.69723370815331	0.124077958218105	0.695228274746513	0.919230570201314
Merged-chr4-35130816-4	chr4	35130332	35131332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-21223.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.99202800825137	4.84335975940039	5.01839616272628	4.46253336872995	4.79952108265629	4.79877766624499	-0.569923350777161	0.161062525167177	0.533698004623889
Merged-chr3-41743986-4	chr3	41743509	41744509	+	998.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1391.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	6.23633361497228	6.43583622956357	6.07295670134937	6.62769539614407	6.97081607073342	6.39591371682344	0.698384851392507	0.0222096102856645	0.173035323281795
Merged-chr1-88228514-6	chr1	88228115	88229115	+	902.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	1595.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.93184242826955	3.74850615162276	4.37446529698437	4.27496692048761	4.20485440650843	4.62915870480099	0.940051543488564	0.0755563124970417	0.361882008485931
Merged-chr16-11421746-2	chr16	11421246	11422246	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	16098.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.89358984687811	4.11191129412623	4.11600697815158	4.13435936471046	4.14729257031409	4.04134022860213	0.202408677213883	0.676692286433663	0.912549881054299
Merged-chr1-95665225-4	chr1	95664776	95665776	+	997.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2318.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	4.02263569288159	3.66211453734524	3.80890969446706	3.76879614893192	3.80683345662952	3.60872357364555	-0.339086377690724	0.536830077073388	0.854215768737235
Merged-chr7-114316595-4	chr7	114316106	114317106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-40490.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	5.5358292159345	5.78344016480804	5.62906996032606	5.17185988069655	5.05766784617801	5.28461298216727	-0.961029887946763	0.00497550066919349	0.0610171642862567
Merged-chr18-35703118-4	chr18	35702625	35703625	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029669)	promoter-TSS (NM_029669)	19.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	4.71166994348153	4.96728362698603	4.41428729644254	4.66772563864843	4.70075128383126	4.48395524532054	-0.241188739489987	0.584479732460229	0.874568023559098
Merged-chr19-61084665-4	chr19	61084160	61085160	+	999.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56180.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.63871680176123	3.47696946491564	3.50420713665847	3.18570323918975	2.93686851145642	3.11303388071186	-2.01372719648144	0.0025169029273319	0.036929235859837
Merged-chr16-36711002-3	chr16	36710502	36711502	+	850.1222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	B3A|SINE|B2	17024.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	7.46687887656519	7.54790854064669	6.75507852371788	7.27598298169101	7.29344379611636	6.79731080228833	-0.24427975357349	0.440406717355487	0.801772140845611
Merged-chr8-77423053-4	chr8	77422556	77423556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94000.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.27091591913755	7.37190391586614	6.83560962522803	7.25355114409721	7.29449607578243	6.83032563145043	-0.0568580186868658	0.841827193450241	0.963002495523594
Merged-chr11-70465968-2	chr11	70465468	70466468	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001348337, exon 14 of 14)	exon (NM_001348337, exon 14 of 14)	-5984.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	5.25913883017068	4.7941278336017	4.89733202539325	4.86727993609244	4.7199765636805	5.26012831553345	-0.0995441744925635	0.814217071824775	0.956174647698565
Merged-chr4-86886300-4	chr4	86885783	86886783	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290543, intron 2 of 5)	intron (NM_001290543, intron 2 of 5)	11869.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	3.94402347517286	4.02741811350812	3.83587069947821	4.09390468262716	3.71969560369813	3.68910336301264	-0.287930848632308	0.59290025809873	0.878314455943299
Merged-chr15-76661167-4	chr15	76660550	76661550	+	826.320801	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276322)	promoter-TSS (NM_001276322)	469.0	NM_001358911	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	3.26670275683373	3.18384418291093	3.32206423163638	3.16570445552525	3.34793717787696	3.39270921388874	0.19941038168209	0.746698088747514	0.936300236930265
Merged-chr2-32452113-4	chr2	32451606	32452606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-636.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	7.54061531818757	7.72892347602281	7.63746535706424	7.67920562147112	8.096080011106	7.56869815974371	0.250411155528645	0.32263255034996	0.715997472916187
Merged-chr8-83159124-4	chr8	83158620	83159620	+	856.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6232.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.85607882043625	4.51711592657641	4.30941607165632	4.71910446401416	4.38851077107178	4.64499905603405	-0.00931723510177395	0.9837974757235	0.99644342633169
Merged-chr6-83651281-3	chr6	83650784	83651784	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 4 of 6)	L1_Mus1|LINE|L1	4832.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.38504320698809	6.89911259187175	6.55019795696838	6.61251443611446	6.62441815911546	6.38627690901677	-0.133661537518342	0.646934948139531	0.90114476203283
Merged-chr1-88230045-2	chr1	88229545	88230545	+	912.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	3025.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.92884560725561	3.85241898253025	3.84361642128346	3.76513914903588	3.65797599908294	3.91275898715688	-0.329752358202786	0.528198049741882	0.850495873730805
Merged-chr5-137745927-4	chr5	137745418	137746418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-51.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	6.63033788654824	6.40830497450405	7.00836863466629	6.74654727124855	6.83934846963046	6.88104911957445	0.199738876545835	0.48337298855127	0.826174950723369
Merged-chr13-56614525-1	chr13	56614025	56615025	+	603.5	f0_balb.idr	intron (NR_155548, intron 2 of 16)	(TG)n|Simple_repeat|Simple_repeat	4939.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	4.90334900420296	4.87629349975541	5.54548252518073	5.32458460279586	5.26394511361126	5.30210678585986	0.335941385914008	0.402388149567131	0.778019718782707
Merged-chr19-3833050-4	chr19	3832633	3833633	+	898.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18640.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	2.74304385584068	2.40296197874504	2.61217036208541	2.60859661320583	2.63511588110272	2.80860040201715	0.495870807779425	0.531141205477524	1
Merged-chr6-143166207-2	chr6	143165707	143166707	+	619.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1023.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	5.9466873093438	6.28803184845224	5.77808512211016	6.02291885895109	6.34226664629117	5.81367258741965	0.100740563046033	0.765474858996219	0.942148336413151
Merged-chr7-45742566-3	chr7	45742092	45743092	+	834.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360784)	promoter-TSS (NM_001360784)	-114.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	2.9856459212074	3.20397722988677	3.1371146448536	3.76926857395852	3.89624690499144	3.68262491909533	2.74988777704629	4.06166341601377e-05	0.00132586461168958
Merged-chr7-47054363-2	chr7	47053863	47054863	+	573.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026436, exon 3 of 3)	3' UTR (NM_026436, exon 3 of 3)	3723.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	5.55170043447947	5.80789643951722	6.38680300255002	5.94382656365709	6.05132024110554	5.9546473617174	0.0589893393167245	0.868630355065854	0.969708434868159
Merged-chr4-107892814-2	chr4	107892314	107893314	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028754, intron 4 of 6)	B2_Mm2|SINE|B2	2915.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	1.94339317656146	2.00020482005229	2.00701956193873	2.1579302579518	2.14858223442678	2.34731637434292	1.84873104668487	0.0516133016884131	1
Merged-chr4-74280199-2	chr4	74279699	74280699	+	911.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356561, intron 2 of 20)	MTE2b|LTR|ERVL-MaLR	28320.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	3.04069788560586	3.03723188486086	2.8712139706988	2.90345696294774	2.79476289074326	3.00547041940429	-0.436550218048829	0.530398022653446	0.851124499430081
Merged-chr14-45552382-4	chr14	45551870	45552870	+	997.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045809, intron 3 of 6)	intron (NR_045809, intron 3 of 6)	8660.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	4.02143490387998	4.41646851362454	4.38312784746572	4.17018556462938	4.30352155205829	4.71680122622173	0.325552626949945	0.51041309231075	0.840886591313675
Merged-chr11-85518582-4	chr11	85518058	85519058	+	794.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	165394.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	3.79180036955463	4.00508111792728	3.97565311611426	3.72297672707295	3.81295150894795	3.94888691538051	-0.310791225024688	0.548888978695149	0.860071455679488
Merged-chr4-3640076-3	chr4	3639582	3640582	+	861.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16424.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.4761190915103	4.57199870491434	4.69704332191809	5.34119471261015	5.26554849347333	5.51454781232645	1.73298307995342	6.99776542531378e-06	0.000295268795897317
Merged-chr3-40745298-4	chr3	40744802	40745802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011020)	promoter-TSS (NM_011020)	-311.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	6.37923791822905	6.44996113270383	6.23072659899096	6.38896109144033	6.32968415140986	6.04393165983604	-0.14933612710689	0.601496148613471	0.881943853341137
Merged-chr4-99152355-4	chr4	99151853	99152853	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31438.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	6.12790364421206	6.02986479654174	6.46297242976404	6.70011866223377	6.72568378161709	6.64029064350533	0.788489043859324	0.00491983873162247	0.0605576836066335
Merged-chr7-28391465-2	chr7	28390965	28391965	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 1 of 3)	B1_Mus2|SINE|Alu	1225.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	4.39546077810964	3.92098351766576	4.04039645806427	4.47349049373891	4.40937531072494	4.74954784582357	1.05733901131553	0.0324263159358836	0.218861850778148
Merged-chr6-116139356-2	chr6	116138856	116139856	+	588.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 1 of 5)	B2_Mm2|SINE|B2	54018.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	3.7598781708226	3.46793069175405	3.49166970050629	3.63725537944208	3.73549818215558	3.77768707827221	0.452736748339089	0.421845536550307	0.790756682370678
Merged-chr3-9853268-3	chr3	9852764	9853764	+	800.472229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19585.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	2.50361234646515	2.47194300847672	2.47230456228601	2.65038323204674	2.87685925602853	2.80303638351473	1.73877226602476	0.0285224275598301	1
Merged-chr15-33185303-2	chr15	33184803	33185803	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	102174.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	5.67171419400793	6.09751956663851	5.95836610143951	6.08162005772591	6.1874158930015	6.2344892952778	0.422829138964378	0.16834163958852	0.544864752581325
Merged-chr1-138261689-4	chr1	138261154	138262154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12084.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	6.01597851878764	5.96524246518125	5.89455965965136	5.70725380079861	5.71778129400957	5.80799230014341	-0.396634503009002	0.184593693007196	0.568329460805994
Merged-chr6-142748464-4	chr6	142747960	142748960	+	964.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TGGGGG)n|Simple_repeat|Simple_repeat	-8226.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	6.34743011542036	6.80387544624646	6.41044935597441	6.39264823688414	6.74895253281287	6.83212508397588	0.200119860302313	0.505257878723629	0.838055364884185
Merged-chr8-103970180-3	chr8	103969694	103970694	+	968.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131431.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.425631014735	4.31847997483244	4.09174124057883	4.29323419162031	4.63134604532492	4.16285016199218	0.254428369072989	0.600816814542777	0.881855262262798
Merged-chr11-60768693-2	chr11	60768193	60769193	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	8672.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	4.98399532482412	4.72152541383491	5.12193963077261	4.62982477420483	4.95784633978703	4.91738461633109	-0.219325905012621	0.59074000437107	0.877301111216348
Merged-chr1-75190056-4	chr1	75189581	75190581	+	994.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003917, intron 4 of 15)	intron (NM_001003917, intron 4 of 15)	1929.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	4.29552425672698	4.29604212415535	4.81271354884493	4.14627287577157	4.08929634170973	4.87611490147749	-0.17357190835203	0.746426685343948	0.936300236930265
Merged-chr8-120711373-4	chr8	120710854	120711854	+	919.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-25004.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.65918700195331	5.72776264996062	5.33155140389904	6.08368692590412	6.14502383245203	6.01239620557432	0.862891211039524	0.00687238884723143	0.0770786508263735
Merged-chr11-78347375-2	chr11	78346875	78347875	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313985, intron 2 of 4)	intron (NM_001313985, intron 2 of 4)	665.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	4.97065804701773	4.97398250766572	5.57557554175542	5.18822250708171	5.43668989116773	5.68604781472483	0.506309256458739	0.207962496581847	0.598797906704598
Merged-chr12-76535762-2	chr12	76535262	76536262	+	895.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	2202.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	5.28016095115189	5.54200614256864	5.64489932226002	5.40852445127968	5.50183633630382	5.57407908407419	0.00615720238248111	0.985500317784237	0.996904015210561
Merged-chr8-84257284-4	chr8	84256808	84257808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026423)	promoter-TSS (NM_026423)	16.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	6.1405987969201	6.21903670776213	6.23603533149817	5.84234051251735	5.63621833448563	6.19772423963518	-0.520015189361377	0.0995548834774692	0.420731832330245
Merged-chr5-137535513-2	chr5	137535013	137536013	+	690.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2207.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	3.94457062864735	4.06725802380084	4.18561498849376	4.13451247330657	3.83428209911036	4.87540878159584	0.764645968011473	0.181243734178567	0.563574247882485
Merged-chr7-139131678-4	chr7	139131138	139132138	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	45637.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	2.44585965512984	2.47266881136932	2.59634629153538	2.42246873239972	2.27180555156956	2.60868245977514	-0.419571943105582	0.610438737830034	1
Merged-chr13-45903797-4	chr13	45903317	45904317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	61174.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.45303793030695	6.34692024743066	6.1875684627353	6.39218094123134	6.35341077170805	6.66736532033461	0.209860162713679	0.457559038550562	0.812344696037543
Merged-chr17-17887940-4	chr17	17887412	17888412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008039)	promoter-TSS (NM_008039)	88.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	6.14945816484887	6.43367992311715	6.20903466267566	6.56512618688266	6.67349613941068	6.67264471246742	0.587316064413413	0.0318702001384726	0.216461937673224
Merged-chr13-49242423-4	chr13	49241926	49242926	+	900.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5868.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	5.28891208872429	4.9728195771763	4.94963622279059	4.62192146864606	4.70268833551101	5.04926797918848	-0.639802149223541	0.115806797203548	0.454316453640397
Merged-chr4-59862190-3	chr4	59861701	59862701	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	52855.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	5.91450011659589	5.85865474013319	6.00588707261732	4.8882024416748	4.79087165003915	5.27106600634523	-1.85830497128277	1.88380070974693e-07	1.246995142853e-05
Merged-chr10-121476425-4	chr10	121475930	121476930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-180.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	7.41489589632191	6.92618432611689	7.18431538022587	7.11046823256337	6.94687867075971	6.65050283076781	-0.406263362906789	0.148826582862253	0.51474266265846
Merged-chr2-120136466-2	chr2	120135966	120136966	+	839.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	18109.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.26049956395532	6.17013205463906	6.16021230497014	6.22372745282395	6.52500577119747	6.38164940248027	0.312035051547177	0.26637393609556	0.664166899200562
Merged-chr8-104250892-4	chr8	104250381	104251381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	20.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	6.73212268203152	6.49954077228114	6.5411272466629	6.63006212665609	6.62646554296399	6.54759870902084	0.011006581201262	0.966484020716405	0.992315915860502
Merged-chr15-76710589-4	chr15	76710109	76711109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145471)	promoter-TSS (NM_145471)	-32.0	NM_145471	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	6.44301311233353	6.51950255717277	6.66590045330442	6.51829365657933	6.55042398503003	6.78500617128077	0.121693419517991	0.649460562019802	0.902160587683553
Merged-chr11-115474129-2	chr11	115473629	115474629	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1538.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	5.85649596663567	5.74518799793042	6.15858586501851	6.23863101494425	6.26123610180756	6.02377600987687	0.458815645366342	0.133569132997275	0.488819290786001
Merged-chr7-122067148-4	chr7	122066673	122067673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138589)	promoter-TSS (NM_138589)	-25.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	7.85257050219089	8.34213807861502	8.01560173924308	7.90966963923496	8.04401839367124	7.62280193435041	-0.301444138329717	0.238783975577323	0.635494547891825
Merged-chr16-24712410-4	chr16	24711929	24712929	+	724.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 7 of 12)	intron (NM_178665, intron 7 of 12)	-9426.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.562031852755	3.71790485554672	3.55746900701599	3.60768796842523	3.5671015217726	3.92849706635331	0.286998392457242	0.611629258409636	0.886202416377889
Merged-chr5-123664905-4	chr5	123664420	123665420	+	802.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	19441.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	5.41853109507598	5.08992448556712	5.27906514477915	5.11792029505942	4.90490419754145	5.18394986768558	-0.422162486487103	0.255531505206832	0.652637143105991
Merged-chr8-36812573-4	chr8	36812059	36813059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-79505.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.77954166770812	5.82205265266651	5.80226313420904	5.4852826056488	5.60787193673292	5.17399938359121	-0.648944399900466	0.054365531657439	0.299402499821927
Merged-chr1-88225875-2	chr1	88225375	88226375	+	979.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1145.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.68994754017386	4.84315859704332	5.02285928368199	4.77054019819276	4.88492592537399	5.41049525977885	0.409924963635413	0.333322212184007	0.724266846801245
Merged-chr16-94574149-4	chr16	94573658	94574658	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3251.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.92176231427888	5.01415636679195	4.67716330015771	4.81013831161259	4.99811567198463	4.74415414694184	-0.0536497171574611	0.893608893396015	0.975265071347118
Merged-chr17-29986819-4	chr17	29986355	29987355	+	767.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18184.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	3.63618089947126	3.62673447885734	4.02703444069941	4.01470423785542	3.57389799612374	3.71144806663899	0.0344201893801683	0.952295151054891	0.989068549972429
Merged-chr5-86068485-4	chr5	86068027	86069027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2944.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	5.25408658195624	5.44020810573937	5.45328743490111	5.56540373005572	5.56400895323866	5.33198932959925	0.226491087062369	0.502955580647379	0.836691193058519
Merged-chr11-106429841-4	chr11	106429358	106430358	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 4 of 21)	intron (NM_023913, intron 4 of 21)	-47077.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	6.74980517872169	6.74353818110674	6.63929827059609	6.50057042901981	7.04542735726054	6.61335498342156	0.0634154903148914	0.82469442978099	0.958596193929081
Merged-chr12-85698190-2	chr12	85697690	85698690	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016767, intron 2 of 2)	CpG	11470.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.11768999736121	5.78017005330441	5.74078799915226	5.58598448155135	5.74974011826469	5.75028813318932	-0.359627654572022	0.264301913274231	0.662221571944713
Merged-chr5-44212058-4	chr5	44211580	44212580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173764, intron 2 of 13)	ORR1D1|LTR|ERVL-MaLR	14526.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	5.15797571893699	5.12502305803586	5.01146307241789	5.76083501649896	5.58462017312698	5.15336106134592	0.848615836842494	0.0224293428989584	0.174127707028973
Merged-chr17-78917965-4	chr17	78917460	78918460	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	1461.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	5.73552595101854	5.56854642113699	6.08144607636346	5.87051539838829	6.26206620639791	6.01194822621396	0.465738462280478	0.160270157556588	0.532965919658045
Merged-chr5-93195870-4	chr5	93195355	93196355	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	10640.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	5.77851973390081	5.81101505065257	5.76342428834189	5.80102715378339	5.61372621036021	5.60954341535121	-0.195867612483528	0.527434781095303	0.849959198694232
Merged-chr10-128499505-2	chr10	128499018	128500018	+	816.125	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_172259)	promoter-TSS (NM_172259)	271.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	6.70492734202362	6.8281097414939	7.04817734939967	7.23637204099311	7.2070356234166	7.15597543631786	0.520769110816436	0.0356058386050758	0.231760340424208
Merged-chr9-40783301-6	chr9	40782830	40783830	+	943.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133733, exon 7 of 7)	3' UTR (NM_133733, exon 7 of 7)	-17943.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	6.94456594864856	7.14579470604047	6.7532803533055	7.51150699687765	7.99113917334279	7.32649903195055	1.01514908245869	0.000420063007548361	0.00915229189109295
Merged-chr14-70213235-4	chr14	70212729	70213729	+	957.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5558.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	7.24832847599086	7.53549676905036	7.31345498863683	7.38703232315641	7.62117690332254	7.33667623078585	0.126731574400607	0.604387761658985	0.883069006867914
Merged-chr9-7349708-1	chr9	7349208	7350208	+	569.0	f0_balb.idr	intron (NM_001320077, intron 3 of 10)	intron (NM_001320077, intron 3 of 10)	2334.0	NM_008605	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	2.73521221303039	2.78288705321644	2.86078288715869	2.77732940071985	2.86950065317324	2.684645905708	-0.0363175033454308	0.960067592404139	0.990335445597503
Merged-chr6-114849142-2	chr6	114848642	114849642	+	798.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	72679.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.74785591293244	4.43280487732943	4.39469769720419	4.33183137108236	4.2704523152765	4.74236764770603	-0.215787544612426	0.642908957474496	0.899548231805501
Merged-chr5-108131954-4	chr5	108131459	108132459	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028481)	promoter-TSS (NM_028481)	661.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	8.44044363672499	9.01241297672394	8.46527046882411	8.340664789239	8.67981494606457	8.28693562912613	-0.304924961698617	0.246243298048599	0.643326659772837
Merged-chr15-101274611-2	chr15	101274111	101275111	+	868.916626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010444, exon 7 of 7)	3' UTR (NM_010444, exon 7 of 7)	7765.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	2.8052075738633	2.95390924420335	3.07496777897205	3.20757011529569	2.75304373984295	3.03059865909776	0.288501506764444	0.689264279517845	0.917319650405699
Merged-chr2-84059459-4	chr2	84058949	84059949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-118223.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	4.3175712993091	4.23154235312053	3.99413060764553	4.17068755400315	4.28545348197735	4.06429662558571	-0.0354408312099172	0.94154622155731	0.987024728112131
Merged-chr2-6048083-3	chr2	6047581	6048581	+	867.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081132, intron 19 of 21)	intron (NM_001081132, intron 19 of 21)	82104.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	4.68425451453934	4.83579712992174	5.0124348287985	5.09530905100729	4.99678770723527	4.89880921971723	0.353386859884301	0.361253817169033	0.747183883146927
Merged-chr5-86079462-1	chr5	86078962	86079962	+	544.0	f0_balb.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7716.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.98201437387451	4.92640682577724	4.90224280084565	5.11643505434989	5.33291869093953	4.96840802413706	0.468838559985512	0.212535512306041	0.605079620294493
Merged-chr9-109932650-7	chr9	109932127	109933127	+	825.080933	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205332, intron 1 of 17)	intron (NM_001205332, intron 1 of 17)	853.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	5.03672817402936	5.00840939535494	5.33860306586593	5.21988230269419	4.86616373567246	5.22133308615769	-0.0475715463170511	0.901680402363697	0.977334309271934
Merged-chr4-139228079-4	chr4	139227566	139228566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	33955.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.75962262671321	6.66756990146836	6.48976149734874	6.69486472103434	6.92702065872983	6.60342002806177	0.169630176722743	0.528661345369652	0.850585575598857
Merged-chr19-60889748-4	chr19	60889261	60890261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	12.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	7.03719349013264	7.43987233139226	7.6217999807165	6.61069415082473	6.75599731545319	7.04730682284315	-0.86751753097473	0.00243430307883716	0.0359519862591201
Merged-chr4-155705562-4	chr4	155705063	155706063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026899, intron 1 of 4)	CpG	748.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	9.30283197374514	9.60430575808391	8.78956417659621	9.0301632937069	9.22406302103977	8.96791052329545	-0.273247848303061	0.299155993148552	0.695964214930834
Merged-chr5-139323755-2	chr5	139323255	139324255	+	856.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 1 of 10)	MIRb|SINE|MIR	1709.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	3.65140930370057	3.99812380029328	4.07964662531124	3.76955202645146	3.63796952756355	3.86869766056927	-0.516286878764138	0.343870996126377	0.732645864957409
Merged-chr4-141619110-3	chr4	141618600	141619600	+	959.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-467.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	3.96209369389753	3.70089985831806	3.57007809500042	3.60492255757131	3.23132248323833	3.52970791166564	-1.06404841023867	0.0793971513640177	0.372594787135367
Merged-chr7-141009903-2	chr7	141009403	141010403	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025378, intron 1 of 1)	intron (NM_025378, intron 1 of 1)	841.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	5.24639793966557	5.1377246021745	5.92460616746704	5.5255900083136	5.37469455199136	5.32436898636381	-0.115818350269264	0.771045286800401	0.943565600102578
Merged-chr10-7122569-2	chr10	7122069	7123069	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172546, intron 12 of 12)	ORR1E|LTR|ERVL-MaLR	89668.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.98872022258248	2.99862927755094	3.17509795663383	3.0579914283786	2.93833721785883	3.01706722422187	-0.224901531528899	0.735780814135877	0.932891187813218
Merged-chr7-140947172-4	chr7	140946662	140947662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153832, exon 12 of 12)	non-coding (NR_153832, exon 12 of 12)	3077.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	6.64349135251914	6.63389586041568	6.19474566762891	6.22270544695395	6.08834765031804	6.12196371548893	-0.617361236485647	0.0348972111708784	0.229090899179996
Merged-chr16-36531302-4	chr16	36530793	36531793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30841.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	5.7992931729197	5.57984649319291	5.25781382266358	5.19992409652127	5.22310346088125	5.44876745539276	-0.558421646650628	0.121484988483587	0.466267788719735
Merged-chr6-31314204-4	chr6	31313700	31314700	+	970.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	84573.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	4.05669166365609	3.91489358155967	3.98548123592798	4.02393856952324	3.95628859789516	3.7973826646743	-0.158806026228725	0.752606040760243	0.938346259574037
Merged-chr7-3694265-4	chr7	3693788	3694788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	-220.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	6.67224017907894	7.00730550335127	6.98052726562249	7.12570083656693	7.34516611585484	7.23844929195592	0.528868483476443	0.0379537401061903	0.241017691120803
Merged-chr11-32558291-4	chr11	32557770	32558770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	MER5A|DNA|hAT-Charlie	25004.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.5757564235742	7.54817891370929	7.58580585061268	7.59436505728296	7.54770259983073	7.62382927425547	0.0258029954389077	0.905443199640281	0.978354146449914
Merged-chr14-101609247-4	chr14	101608742	101609742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081278)	promoter-TSS (NM_001081278)	-51.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	4.15911602614414	4.40789560105108	4.17660242325987	4.47321248687603	4.46802786179918	4.09615050383757	0.290028324108	0.543098962464595	0.857486639982385
Merged-chr11-120234077-3	chr11	120233618	120234618	+	826.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 1 of 27)	CpG	1171.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	3.31767405677127	3.07844651318584	3.28972755101198	4.24342418221041	4.08527280257315	3.88839449710302	3.28182995214026	7.99974211501355e-07	4.46440336623774e-05
Merged-chr6-116679782-4	chr6	116679297	116680297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5961.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.11636661676364	6.0507283647343	6.23154488291584	6.19370237521064	6.45272207667311	6.23059005594938	0.295637996374347	0.300112174116924	0.696853182193974
Merged-chr10-84774819-4	chr10	84774316	84775316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	18768.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	2.99458248739886	2.94251565240293	2.85311327273532	2.88595860137296	2.85674658614267	2.98674482743725	-0.131443741624399	0.848679412780919	0.964356989789491
Merged-chr12-36381946-7	chr12	36381408	36382408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289503)	promoter-TSS (NM_001289503)	-239.0	NM_001289503	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	7.76550964906585	7.77111188735357	7.60521063506056	8.11890449336829	7.94286424329024	7.48713042256524	0.23659356062019	0.356981448751451	0.743660865917135
Merged-chr17-12119937-3	chr17	12119434	12120434	+	704.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	650.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	4.313791397949	4.22224265931422	3.96301692708136	3.76145392030586	3.7616836752111	3.93146402169095	-1.11512272818779	0.0294988717619878	0.206559128298534
Merged-chr14-30592334-1	chr14	30591834	30592834	+	739.0	f1_balb.idr	Intergenic	RLTR12E|LTR|ERVK	17976.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	5.57316955674775	5.38403661137551	5.25760749124821	5.63516882181871	5.79200589361493	5.62900010494402	0.512694190178241	0.123450256159289	0.470220248592576
Merged-chr11-3170179-2	chr11	3169684	3170684	+	1000.0	f0_balb.idr|f1_balb.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23279.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	5.53718839303217	5.96308358329708	5.8414906526398	4.17941426311356	3.7902301725722	6.84133400658306	-0.0243396843184354	1	1
Merged-chr15-97786175-4	chr15	97785644	97786644	+	971.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	1779.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	7.75861657112523	7.90921800457384	7.83682082464866	7.5694799529687	7.88589303856948	7.38751197140361	-0.279710263044453	0.256053617876607	0.653115451305932
Merged-chr11-89021688-3	chr11	89021223	89022223	+	955.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	22320.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.93718628546206	7.92963789294372	7.68147043568356	7.66755734199996	7.78965049718871	7.55512407290661	-0.259219202628033	0.256370608192462	0.653496479076016
Merged-chr9-70783408-4	chr9	70782913	70783913	+	802.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	104431.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.76075988033757	4.75928438574716	4.45652437201146	4.28300135798628	4.52583172439233	4.29210276332236	-0.723579273791583	0.1050991041447	0.432539630906728
Merged-chr1-152437509-2	chr1	152437009	152438009	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	IAP-d-int|LTR|ERVK	37642.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	6.20381001741972	6.29923584512911	5.9255635519026	5.9734581787392	5.98146130408957	5.72499345767664	-0.442853452256813	0.150432054082603	0.517258992359404
Merged-chr10-62600562-2	chr10	62600062	62601062	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019553, intron 1 of 14)	B2_Mm1t|SINE|B2	1736.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	3.37935341020541	3.1885761405411	3.35093971623372	3.22726022795141	3.14833004223941	3.19503612031239	-0.48908147825767	0.433346013301856	0.797793107392544
Merged-chr5-125363495-1	chr5	125362995	125363995	+	744.5	f0_balb.idr	Intergenic	Intergenic	-22401.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	5.44825211159006	5.51374836773911	5.69898992093513	5.12210181626553	5.27373492514046	5.38095615552614	-0.56905015343383	0.0974454152037191	0.416233989130958
Merged-chr3-87619292-4	chr3	87618794	87619794	+	944.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1735.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	6.61193557194693	6.70178482573147	6.51895481434279	5.69385944632169	5.77002400487776	5.76361819843617	-1.47789639594667	1.93533340380652e-07	1.27805731638042e-05
Merged-chr11-22842591-1	chr11	22842091	22843091	+	762.5	f0_balb.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	17144.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.66625780799458	6.51555174957792	6.43630868047718	6.69262119482871	6.86252062554372	6.45797513091923	0.230727105538226	0.402137071116734	0.77787096574423
Merged-chr10-12842702-4	chr10	12842181	12843181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	19054.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.29352594486893	4.09495011173316	4.05043842250804	4.17653864416215	3.92088455319992	3.7460109623834	-0.550484603778174	0.287072079165984	0.684323804399215
Merged-chr13-98868724-3	chr13	98868219	98869219	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	22323.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.73807038728105	5.80525889423093	5.7349094328114	4.99979639154521	4.79769865998268	5.1955223183839	-1.53440713420014	1.24616365168888e-05	0.000483858073400507
Merged-chr10-62451033-1	chr10	62450533	62451533	+	551.0	f1_c57bl6.idr	non-coding (NR_027926, exon 1 of 1)	non-coding (NR_027926, exon 1 of 1)	-1295.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	4.53273204891548	4.91660984438768	4.93939461099448	4.54652138623342	4.87509543588567	4.96942932740115	0.0039488777236992	0.992617947303628	0.998523796268552
Merged-chr7-101617081-2	chr7	101616638	101617638	+	747.0	f0_balb.idr|f0_c57.idr	Intergenic	MLTR11B|LTR|ERVK	-35977.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	6.18734016081791	6.15630851638785	6.02008680835239	6.76481674344116	7.02478522405763	6.55932372559553	1.09646978459404	0.00012079003397074	0.00332584286784823
Merged-chr14-19916056-3	chr14	19915574	19916574	+	947.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	60619.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	3.99669172567907	3.94494597342317	3.94539692588454	4.28141369331648	4.20057203510636	3.85638872809048	0.496743995987027	0.324140146385643	0.717287790132387
Merged-chr1-64600844-4	chr1	64600349	64601349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	16319.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	6.27944864479885	6.13977441776627	6.13763259723265	6.04417097360951	6.36427537711444	6.15496962785574	0.0222883302698885	0.938787401786294	0.986544861427556
Merged-chr16-59570970-2	chr16	59570476	59571476	+	688.25	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15224.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	2.48154543862894	2.81963677552424	2.67490090602653	2.9343256049794	3.25316822919463	3.06498466186423	2.19793981756477	0.00823665678215405	0.087859422099777
Merged-chr6-120155641-4	chr6	120155132	120156132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38191.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	7.86728297579048	7.68906367271525	7.54771127754735	7.49585074102728	7.73045864680083	7.66154811495113	-0.114130967684035	0.625403635333915	0.892508244243549
Merged-chr1-71557105-4	chr1	71556603	71557603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026195)	promoter-TSS (NM_026195)	-53.0	NM_026195	108147.0	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	5.65479859393877	5.88287876500875	5.68591373803215	5.69586286162114	5.64397169464411	5.49085133623924	-0.239943474371261	0.453311874807267	0.809745581877009
Merged-chr8-35379371-4	chr8	35378876	35379876	+	994.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3635.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.02743782422887	4.81651102213444	5.05876462461192	5.02207334903034	4.98549415258133	4.75158542037932	-0.0734446843895706	0.849681586565375	0.964686793473289
Merged-chr19-5836955-2	chr19	5836455	5837455	+	890.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	8523.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	5.01723159014088	5.28102226973344	5.28716062171748	4.61473010125935	4.55066289090838	4.77863255470173	-1.23815094611555	0.00164814204335764	0.0266378495723892
Merged-chr17-83527871-4	chr17	83527374	83528374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-13541.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	5.81425863987019	5.93360551742352	6.1890632837606	5.83478689312546	6.2417563340109	6.14772190244414	0.19153321648959	0.544035392495182	0.857551302506722
Merged-chr19-9986073-8	chr19	9985610	9986610	+	865.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010239)	TTS (NM_010239)	3464.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.53101317780511	5.63847433255651	5.40666389253652	5.38453758268861	5.23905479236916	5.21097663776281	-0.495012742260095	0.144341652422113	0.507146496154939
Merged-chr5-151142400-4	chr5	151141901	151142901	+	908.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	47792.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	3.18789181450347	3.07541566793222	3.18033322026656	3.03607626676365	3.09165216298598	3.46509509263808	0.237193934386111	0.719511395170193	0.927884839305547
Merged-chr9-107975434-4	chr9	107974915	107975915	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-152.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	6.76528766018334	6.85500731443609	6.73396018420687	7.38856431487242	7.47449668002911	7.05991546468776	0.818237375373297	0.00131197826910945	0.0222699077552141
Merged-chr1-33901891-4	chr1	33901391	33902391	+	908.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 1 of 6)	Lx9|LINE|L1	5730.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.18576225668967	5.42832755074506	5.65274564720133	5.16927693066175	5.00587629739974	5.71378051479988	-0.214873100081862	0.59306293695652	0.878398361724896
Merged-chr11-115765387-4	chr11	115764895	115765895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028014)	promoter-TSS (NM_028014)	-38.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	6.21651920092009	6.48356749676166	6.58295943327419	6.22657685093546	6.25439344279034	5.80707945360543	-0.509753511901063	0.0997522595209255	0.421136841555491
Merged-chr13-42829102-4	chr13	42828565	42829565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-37182.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	7.65199557177368	7.7815669314944	7.20488786409664	7.49334744664858	7.83888218761115	7.27508573347321	-0.0160513049689745	0.95496753811853	0.989683851514547
Merged-chr17-87311462-2	chr17	87310962	87311962	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	28576.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	2.80346498181343	2.63383464727215	2.91451497260066	2.51950173768239	2.64156218048326	2.75139231054893	-0.792930744714845	0.300216560912338	0.697037211908973
Merged-chr4-135921937-2	chr4	135921437	135922437	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	1211.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	4.66049637141999	5.1966449751054	4.96337017871648	4.88666734046307	5.21929151387336	4.79979620510669	0.0660120871606835	0.875880203111112	0.971136321106511
Merged-chr17-56269345-4	chr17	56268848	56269848	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_174989)	TTS (NM_174989)	7419.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	7.95076181675131	8.14586412794778	7.87682226580231	7.96391226369459	8.3711960804596	8.00354148929015	0.18831705437555	0.432035080786482	0.797216457194801
Merged-chr8-84843543-2	chr8	84843043	84844043	+	640.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007591, intron 7 of 8)	intron (NM_007591, intron 7 of 8)	-2878.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	3.98582718919193	3.69260254336392	4.09260199874652	4.05861441863655	3.61461443388709	4.02368102155759	-0.0638750150813493	0.90802818664725	0.979100266360983
Merged-chr2-19048405-4	chr2	19047910	19048910	+	878.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50091.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	3.76979472029211	3.59762373284225	3.95266590442612	3.88283425602109	3.88496789753045	3.97390742398525	0.443873979517964	0.399528730675052	0.775915942094585
Merged-chr6-114268919-4	chr6	114268430	114269430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13705.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	5.3577513761487	5.01476170381364	4.98833245053496	5.49522407713047	5.56362269344006	4.7152172710483	0.374122105793116	0.393012669080721	0.771429661681589
Merged-chr17-67448236-4	chr17	67447753	67448753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93762.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.23584975864511	4.17224152261288	4.13750372700229	4.10226653019149	4.22237078297936	4.15874998209002	-0.0558219043784008	0.904603843513397	0.978142219404953
Merged-chr4-132049258-4	chr4	132048782	132049782	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128606)	promoter-TSS (NM_001128606)	-204.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	5.14502727740444	4.8518772579333	5.11076326223625	5.13735009660571	4.78520956714917	4.503279720496	-0.429942814633494	0.313706257283881	0.708132564679568
Merged-chr13-81222049-4	chr13	81221562	81222562	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	L1_Mur3|LINE|L1	257988.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.56597807349644	3.80456614257709	3.52457360532163	3.35013909699449	3.14307277825401	3.42933639541376	-1.29462230744194	0.0350955227654702	0.2298837125257
Merged-chr18-61639603-2	chr18	61639103	61640103	+	605.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045420)	promoter-TSS (NR_045420)	-50.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	4.62256373942918	4.99625684491413	5.1281583928873	4.85161915370014	4.548062974548	4.928694656265	-0.334983840057074	0.43115137296491	0.796688090876857
Merged-chr7-101108456-4	chr7	101107958	101108958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146010)	promoter-TSS (NM_001146010)	-317.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	6.40923295091351	6.12772344370292	6.26196951502661	6.44763490946276	5.91105051176143	6.53934843813535	0.0765220163034633	0.811935216074087	0.955363785551963
Merged-chr19-24995042-4	chr19	24994530	24995530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4499.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.70381742837318	4.88945033680933	4.50313167566014	4.84084311558244	5.25041673819148	5.62425014564971	1.18098696962097	0.0075913173397294	0.0828947943837538
Merged-chr7-29954997-3	chr7	29954485	29955485	+	730.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178384)	promoter-TSS (NM_178384)	-920.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	4.69039320520829	4.96329830881985	4.86021243968737	4.15848996120579	4.34227716859697	4.31708312968261	-1.40231744351147	0.00141868844911437	0.0237231166547243
Merged-chr12-103434185-4	chr12	103433673	103434673	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026790)	promoter-TSS (NM_026790)	-16.0	NM_026790	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	6.97506326518535	7.06053270539433	6.9350424063407	6.99039027744328	7.33524603965881	6.78095798245872	0.116275465072593	0.667861115654066	0.908907404460966
Merged-chr17-35236489-4	chr17	35235992	35236992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-104.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	6.43824306004216	5.7687880194399	6.16078037331018	6.69540175101647	6.48014502681483	6.49535450131225	0.667108817970462	0.0363881120380639	0.234693591695467
Merged-chr17-6793665-4	chr17	6793226	6794226	+	859.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10946.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	4.94811066462435	4.66751022296865	4.66888096956968	5.03586272240752	4.81578896656046	4.96646852511226	0.367114328240715	0.35810856530686	0.74454984718519
Merged-chr13-60683493-4	chr13	60682940	60683940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	81229.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.189013056641	6.95360757194333	7.16946265183271	7.47644619506798	7.73821666541015	7.26354703927987	0.609989381911339	0.017451421000388	0.147480991123327
Merged-chr17-83397879-4	chr17	83397386	83398386	+	826.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46955.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	5.78630071446372	6.15836633049816	6.10542576886347	5.79316281141794	5.94645200800741	5.79262243393162	-0.303355027436252	0.331390215753104	0.722673159460747
Merged-chr3-28011058-2	chr3	28010558	28011558	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	26887.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.80281491711745	4.403814191855	5.325843350718	4.97362334114144	4.86315319835372	4.99356658456145	0.11474363801993	0.802730440870463	0.953336204900582
Merged-chr5-63968436-2	chr5	63967936	63968936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	CpG	461.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	7.88248491077807	7.92242578221088	7.92855417897227	8.0531588388625	8.08563393178677	7.93035778730746	0.167413567748835	0.424956554572825	0.792848465017231
Merged-chr11-32225642-2	chr11	32225128	32226128	+	768.791626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-877.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	2.93416861454291	2.91598964689917	3.00695795308446	3.04481737614343	2.71439822045206	3.13635256998128	0.096462596672058	0.892360743539128	0.975093438798399
Merged-chr7-83809886-4	chr7	83809374	83810374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15035.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	4.38444184912797	4.2186209056554	4.42981100987618	4.32875699125859	3.95598393774119	4.37127294931245	-0.32881314381025	0.493080884515351	0.831208279358962
Merged-chr17-87055062-3	chr17	87054584	87055584	+	965.644409	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29523.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	3.4180496115394	3.36353527287223	3.49726304667923	3.85542977076819	3.65432384382738	3.67739942076916	1.10479424793396	0.0511204966504398	0.28818660469443
Merged-chr9-13301379-4	chr9	13300944	13301944	+	788.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54488.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	3.45502914704347	3.31485953081449	3.29085922444689	3.46709660469256	3.71109765652636	3.5354000879206	0.822964945012932	0.165570578273621	0.540690607417246
Merged-chr10-111986630-4	chr10	111986142	111987142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028608, exon 4 of 6)	exon (NM_028608, exon 4 of 6)	10622.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	4.65072683350663	4.7500886505414	4.76781802020492	4.13842481436937	4.45419095007955	4.34361442293803	-0.987595757527336	0.0256010452956222	0.189658350170773
Merged-chr16-22046139-3	chr16	22045639	22046639	+	864.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027488, intron 16 of 16)	PB1D10|SINE|Alu	36655.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	3.43293986967165	3.51752018402603	3.32630013492284	3.32248955193601	3.32453379889931	3.66472178091901	0.0268735076885766	0.964690547642016	0.99156264855159
Merged-chr9-7595405-4	chr9	7594905	7595905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24009.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	5.7657745066824	5.96940070941752	5.97665682140406	5.89908883980748	6.04929328141449	5.62505423719299	-0.0373634408248825	0.90647004178846	0.978739219832012
Merged-chr10-88371948-2	chr10	88371448	88372448	+	970.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7464.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	2.48254926928394	2.58584480876912	2.48965550016592	2.7099931739249	2.69514339312567	2.92736018931335	1.46801659684237	0.0617784273082708	1
Merged-chr13-99196437-4	chr13	99195965	99196965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	11642.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.12292899274208	6.37520454602859	5.59889542225362	6.2916885902058	6.36531721029604	5.78427870391796	0.163371222630436	0.654945087390489	0.904043908222953
Merged-chr3-116712238-4	chr3	116711733	116712733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362374)	promoter-TSS (NM_001362374)	47.0	NM_144902	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	6.92054554754607	7.07029903293454	6.81494224815029	6.74326316054523	6.50708683759464	6.56270993951161	-0.528049190082838	0.0421133554401044	0.256960619035029
Merged-chr7-24387384-4	chr7	24386900	24387900	+	997.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12228.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	3.91162151998452	3.81481979705282	3.70772706304011	4.46701550856018	4.20581306364041	4.57423454782351	1.71603757768432	0.000843506788792995	0.0157616242717017
Merged-chr18-9506065-5	chr18	9505614	9506614	+	840.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55960.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.83952231017017	4.79321834446517	4.10856869866561	4.97300268707809	4.61308186191766	4.23936991027894	0.0480554958022313	0.928800817704362	0.983903580480019
Merged-chr11-109367040-4	chr11	109366538	109367538	+	916.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3384.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	6.44925364782199	6.81629590892372	6.4197887533196	7.04318936782762	7.18255786580098	6.6295945807176	0.622086455444694	0.0356350373547775	0.231893682785169
Merged-chr1-45868893-4	chr1	45868388	45869388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56706.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.52613342511752	7.30511506838495	7.21956148117451	7.41985719777722	7.54419133838462	7.20296073845768	0.0633162012653929	0.798421976255448	0.951930937621884
Merged-chr3-39268980-3	chr3	39268468	39269468	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	382028.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	3.77552130229034	3.92666308689887	4.18283585196537	6.27733742363159	6.8120687668457	5.75713207888476	6.66742027653539	2.94530168303945e-10	3.52622535888269e-08
Merged-chr17-50130539-4	chr17	50130045	50131045	+	980.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	59952.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.89307931298167	3.77479821423862	3.90359709095787	3.97753465497481	3.79172874531819	3.71403577625686	-0.0668951089767699	0.89813346088222	0.976261391798139
Merged-chr7-96849133-3	chr7	96848629	96849629	+	983.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 22 of 32)	L1MA5A|LINE|L1	-47580.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	4.37220253683421	4.52468658604981	4.03349826171321	3.6018528751483	3.82065838808185	3.78411885213832	-1.78279307398783	0.000983150374080593	0.01777106351172
Merged-chr1-182959355-4	chr1	182958853	182959853	+	944.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	4565.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.24061443412753	3.81551178906497	3.85085573772034	3.92575929066111	3.68579687886764	3.92125460031676	-0.447622707628226	0.406920485087455	0.781142268902047
Merged-chr3-27291601-4	chr3	27291096	27292096	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25481.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	5.28748629249895	5.41076094950505	5.68511933233013	5.90608064473909	6.27868483127197	5.79971868020984	1.0232105461483	0.00265569142217482	0.038374032310874
Merged-chr15-6390872-4	chr15	6390325	6391325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4077.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.71591299362167	5.741226973901	5.89855783986825	5.76866181753058	5.77200817964224	5.68370793115515	-0.0639508451329357	0.835046424188089	0.961451138529569
Merged-chr13-113616628-7	chr13	113616049	113617049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2015.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.61046493296405	8.85725452577925	8.52454404749439	8.56954370244862	8.88244736485604	8.66699850623653	0.0558437477371371	0.802132002587695	0.953161751100363
Merged-chr9-100644234-4	chr9	100643731	100644731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009282, intron 1 of 33)	CpG	783.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	7.71359781502215	7.7844541781685	7.51370924336572	7.87202617415934	7.39738063161821	7.6388108603728	-0.0459565047687723	0.85405490523793	0.965896967163733
Merged-chr8-14090437-4	chr8	14089935	14090935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034862)	promoter-TSS (NM_001034862)	-108.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	4.81874291205076	4.6543680669408	4.50545789881513	4.87991422263578	4.65767809813206	4.85689612443734	0.282246820410634	0.493802818253784	0.83163003018319
Merged-chr2-164806316-2	chr2	164805816	164806816	+	762.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	1202.0	NM_178375	67538.0	Mm.33184	NM_178375	ENSMUSG00000045822	Zswim3	4921517A06Rik|C86566	zinc finger SWIM-type containing 3	protein-coding	3.28556670023049	3.28909276947012	3.61131244358164	3.45075946715322	3.27140610559848	3.42361246011826	-0.0595871305361097	0.922369055210537	0.982542868764899
Merged-chr19-12501045-3	chr19	12500532	12501532	+	983.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_172442, exon 1 of 9)	exon (NM_172442, exon 1 of 9)	964.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	5.5882890307017	5.24230156125494	4.87007594532068	4.80636062955202	4.23403837479697	4.401589376822	-1.72803630072614	0.000216222485045902	0.00533395805979823
Merged-chr17-50470636-4	chr17	50470123	50471123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38924.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	8.13574258577195	8.60388271719826	8.14358936132619	8.37878008824694	8.84767502043848	8.40120564732797	0.349538644496226	0.183471171310607	0.566680172941153
Merged-chr4-128659655-1	chr4	128659155	128660155	+	544.0	f1_balb.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	4953.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	5.17157862577088	5.37408916550594	5.43924680848549	5.01710161157377	5.02633187956924	5.16891564291448	-0.536447436810817	0.134742166545101	0.490659614455871
Merged-chr1-164586318-4	chr1	164585822	164586822	+	880.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	83015.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	4.76831403213602	5.05903233684111	5.22756187851731	4.89442127972558	4.86265590661755	5.00136539802924	-0.232647616080066	0.553356995859191	0.862251545920931
Merged-chr15-102203510-4	chr15	102202989	102203989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-156.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	7.02592789529162	6.94465183730615	7.09392364251539	7.09578821048812	6.83568089695164	7.11438189559084	-0.00773327069248934	0.975256902907569	0.994454548709104
Merged-chr11-31817624-3	chr11	31817071	31818071	+	911.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_102310)	TTS (NR_102310)	6976.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.9690974244002	3.88098427377993	3.78100545044949	3.30884654198038	3.0885906014476	3.2249290866352	-2.74492950262847	2.73909701795871e-05	0.000954417021232445
Merged-chr13-102895051-4	chr13	102894541	102895541	+	929.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134786.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.25057228512139	5.37476740551373	5.00930959528723	4.94553440094228	5.19070979846204	5.17978708210684	-0.24552974682282	0.509153668777562	0.840256821151416
Merged-chr2-156257678-2	chr2	156257178	156258178	+	578.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-54795.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.52901589386017	6.48714435753331	6.43362775590727	6.56612421959816	6.75879569707708	6.27309979891538	0.122445756851512	0.664368349585941	0.907585158243155
Merged-chr19-10841010-2	chr19	10840510	10841510	+	615.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	7.52600584932021	7.43891380070538	7.17335892092164	7.31766771260089	7.78017595021316	7.04200390718706	0.0546164678674387	0.850769589350769	0.964981271430729
Merged-chr12-40858744-2	chr12	40858244	40859244	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR45|LTR|ERVK	-165346.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	1.62283696603943	1.59624371832302	1.8155052529209	1.60664268436332	1.43104707168947	1.4715056520471	-1.93221796805488	0.105474304658586	1
Merged-chr2-84296554-4	chr2	84296058	84297058	+	936.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	128708.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.65352994171372	3.84207364876635	3.84234294836275	3.46957315424826	3.55128356974028	3.43458977094118	-1.01384818276878	0.0740315922128214	0.357899300529169
Merged-chr14-121422114-4	chr14	121421624	121422624	+	944.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42894.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.73658073409783	5.86836321574503	5.8778879650538	5.87734438675257	5.96972520110923	5.86607733730339	0.146621696731938	0.624035836492412	0.891775603426165
Merged-chr18-60804337-3	chr18	60803826	60804826	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042605, intron 1 of 8)	B1_Mm|SINE|Alu	477.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	6.61891175282027	6.61304064070838	6.7629074244212	7.83970851946659	8.26453966523323	7.51296693716378	1.86600245218459	2.53616176009726e-11	3.81607500423458e-09
Merged-chr17-75551209-2	chr17	75550709	75551709	+	916.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357860, intron 1 of 6)	intron (NM_001357860, intron 1 of 6)	737.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	5.97965084428921	6.15540043663703	5.98131652347016	6.3247166301549	6.19440108194507	5.89414670966639	0.193883441041858	0.521127836024672	0.84693755135567
Merged-chr13-54579000-2	chr13	54578500	54579500	+	765.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019968, intron 3 of 3)	intron (NM_019968, intron 3 of 3)	3987.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	5.40683289025956	5.76491915026208	5.90714539038808	5.45977215696793	5.63838389180077	5.67846758493203	-0.198637018113287	0.560911229284379	0.865331098437164
Merged-chr2-156417416-4	chr2	156416912	156417912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3497.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	5.6064809273209	5.15111312262789	5.87481811357696	5.79773969829713	5.79620720442028	5.49264913763366	0.262352206429086	0.480120808683583	0.824491110103264
Merged-chr8-11459966-2	chr8	11459466	11460466	+	996.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B1_Mur2|SINE|Alu	-17963.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	7.55302153451668	7.47933116444646	7.80272500805767	7.72808583923779	7.7524928919371	7.24240414274662	-0.0146925727740382	0.955102279103039	0.989721943182288
Merged-chr7-16913942-4	chr7	16913440	16914440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7450.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	2.43568134914256	2.49473383192703	2.7069584192443	2.35922549996761	2.14937740611752	2.60137388516761	-1.04807162803537	0.243429515571161	1
Merged-chr7-3290911-2	chr7	3290411	3291411	+	767.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093765, intron 1 of 2)	intron (NM_001093765, intron 1 of 2)	355.0	NM_001093765	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	3.30462735099054	3.25850581630482	3.56780195009016	3.80195539254866	4.11858295608213	3.99310551854717	2.16860014687566	0.00023965546819599	0.00579519099030861
Merged-chr7-27195813-4	chr7	27195312	27196312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243888)	promoter-TSS (NM_001243888)	31.0	NM_001243888	414069.0	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	7.63393422632369	7.90054178776152	7.60312604575857	7.68057340588789	7.8386132454345	7.30425328492867	-0.124736827918741	0.6288744910285	0.893945342282012
Merged-chr14-50838207-4	chr14	50837713	50838713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 35 of 54)	intron (NM_009351, intron 35 of 54)	30297.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	7.18949920902717	7.46490673475946	7.24789372077715	7.70797698205702	8.14079435429199	7.81234561823547	0.866170108825866	0.000549842535028568	0.011321776207537
Merged-chr11-79224154-2	chr11	79223654	79224654	+	984.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	18870.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.66560631809733	6.12305742717134	6.50226986998912	6.87261130276437	7.10833807856305	6.79377760047652	0.769255276701604	0.00856168103848741	0.0904061365292463
Merged-chr14-87415313-1	chr14	87414813	87415813	+	782.0	f1_balb.idr	Intergenic	Intergenic	-1270.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	4.42566836696264	4.81032127909292	4.94912264042711	4.80827156673525	5.08975954240673	4.79505056057195	0.39038551810148	0.359962528174203	0.746219593510366
Merged-chr5-103752492-2	chr5	103751992	103752992	+	822.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1670.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.45669646374042	5.43509878974383	5.52672790301401	5.63470270507133	6.11308226516369	5.99270853361297	0.847309660150473	0.0103147518958262	0.102617795654601
Merged-chr4-9658417-8	chr4	9657885	9658885	+	877.6478880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	10777.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.31604663619965	6.88209595943336	6.55619513801787	7.26355227155633	7.11743747079425	6.57819404352242	0.0921344312238592	0.779929604833478	0.945949149660645
Merged-chr11-4595444-2	chr11	4594944	4595944	+	770.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-629.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	7.97619718156377	8.49244206442653	7.59296789343914	8.02513588098323	8.39724280552783	7.79404826366838	0.0273524560072992	0.929691635840713	0.984210069653274
Merged-chr9-13668978-4	chr9	13668490	13669490	+	842.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	6530.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	2.78770191916571	2.58493406365574	2.8492877414363	2.89191225960315	2.83687772103663	2.67087097845152	0.331308278359452	0.657233154975422	0.904798742244684
Merged-chr1-165195203-2	chr1	165194703	165195703	+	550.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-765.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	4.29292797558651	4.37340695897071	4.36883005139208	4.5676671918554	4.68222308028625	4.39196243644059	0.550868577506438	0.206396054904034	0.597017414185317
Merged-chr6-134094772-4	chr6	134094239	134095239	+	890.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	59039.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.02058178867377	3.81550643697281	3.82639943247679	3.78502222751307	3.52583641232716	3.84567440781501	-0.57128571442656	0.29239993085078	0.689626231469153
Merged-chr10-34215848-3	chr10	34215331	34216331	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	3.37481604995649	3.14852541004055	3.60012184174428	3.3939788856165	3.30829335212504	3.0485633198916	-0.472054181602702	0.47897032964384	0.823939232913004
Merged-chr6-97827518-2	chr6	97827014	97828014	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	20456.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.01315982628721	5.80344463374575	5.73050197714537	5.58117316649757	5.66003130672711	6.13503318802273	-0.100129182890822	0.767757175906977	0.942693923190753
Merged-chr11-107124626-4	chr11	107124127	107125127	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	7295.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	3.5728698651277	3.45528874214887	3.77517966433191	3.39752477142694	3.17302277187929	3.49323358266498	-0.935850791034435	0.125027758907618	0.473174984192042
Merged-chr13-94711504-4	chr13	94711009	94712009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-77434.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	5.36266696781609	5.61817178670782	5.73700261023066	5.27648894528594	5.38113656595524	5.51150098378617	-0.357346663196621	0.297455877062578	0.694133231024007
Merged-chr15-79544750-4	chr15	79544244	79545244	+	907.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040187, intron 1 of 12)	intron (NM_001040187, intron 1 of 12)	1815.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	4.69852077279897	4.24706562466089	4.35721595086812	5.05513630445906	4.96767974235671	5.06418124424819	1.32162529035486	0.00218386863841856	0.0330091447167178
Merged-chr7-112213476-4	chr7	112212968	112213968	+	890.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12368.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	3.27310447032932	3.36365192601203	3.52904936219647	2.84542928853925	2.78034166294395	3.44899845665801	-1.40681916615597	0.0688624065698545	0.343354693544131
Merged-chr5-92486254-2	chr5	92485754	92486754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	19403.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	6.02347236901203	6.10131552456565	5.83661738201455	6.14159746374666	5.84977588571243	5.65109623761811	-0.166689870461285	0.602342968129671	0.882303107092216
Merged-chr17-81581396-3	chr17	81580871	81581871	+	725.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	L2|LINE|L2	157016.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.6249366517665	5.37946822617997	5.63949843367952	5.20751168754843	5.41120695770778	5.62315198214314	-0.250801231634435	0.470446570702162	0.819495618343931
Merged-chr4-98436333-2	chr4	98435833	98436833	+	922.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25306.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	4.62255098930702	4.7281094163668	4.63047360632136	4.36018779542122	4.59127697786099	4.25276381250944	-0.589896073497916	0.180147952095364	0.561849644263301
Merged-chr5-137830393-4	chr5	137829884	137830884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	5894.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	6.21602497523498	6.11037552489354	6.09721401374701	6.07610975572194	6.33950665768981	6.3222593259734	0.181300613627849	0.52514341072495	0.848874487604023
Merged-chr6-97511845-4	chr6	97511350	97512350	+	836.696411	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-24030.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	5.08505113598307	4.85451168375107	5.6172332430277	5.72805110368267	5.59090657866368	5.72898255561159	0.911645055053974	0.0183253352368869	0.152741109324941
Merged-chr5-135708486-2	chr5	135707986	135708986	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008898, intron 1 of 15)	B1F2|SINE|Alu	19341.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	7.43616403728131	7.5518668443528	7.1354461876408	7.16556776512006	7.2683618487449	6.65765360683113	-0.480936870453195	0.0929161295518578	0.406165763475229
Merged-chr12-92927670-2	chr12	92927170	92928170	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	517153.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	3.40870599148497	3.34816260674299	3.08281439071334	3.35272170124759	3.57101762207253	3.40108609099852	0.59440883272939	0.350156989960761	0.738196404451908
Merged-chr3-133582163-4	chr3	133581694	133582694	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37804.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	4.68056261825322	4.4840183380674	4.27196165225775	4.60805209713743	4.55398896193256	4.48094067742194	0.125768610394483	0.774954735866285	0.944517829695789
Merged-chr1-184051998-2	chr1	184051498	184052498	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022019, intron 2 of 3)	MER77B|LTR|ERVL	17617.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	2.8361192222942	2.8404549675009	2.57873233687181	2.79564917649282	2.56323797526982	2.90711491000809	-0.00875641370702208	0.991009013625927	0.99812235073275
Merged-chr18-52750921-3	chr18	52750432	52751432	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16879.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	4.92800978481301	4.80918110214193	4.43990257488666	4.72538623357272	4.64355153518321	4.20690686698316	-0.462085144498367	0.324482147791139	0.717544999689449
Merged-chr1-45824625-4	chr1	45824144	45825144	+	840.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	29478.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	5.88131327222467	6.08141933952979	5.86757935262788	6.05096995691248	6.13425863220817	5.97779794981981	0.188337288998749	0.524126665702043	0.848572432574534
Merged-chr5-4876767-4	chr5	4876263	4877263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-118547.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	5.01222144154455	5.26382557835475	5.12908487328274	4.89610071401403	5.03472345805935	5.05765906625801	-0.303370026370745	0.412651556135623	0.784551818322662
Merged-chr1-189657670-3	chr1	189657179	189658179	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	30407.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.52117839005314	4.50836271984545	3.98639646088636	3.64975906984119	3.72619727344676	4.20352510336485	-1.42436304640542	0.0110535377197993	0.107885178678064
Merged-chr18-76944213-4	chr18	76943717	76944717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039201)	promoter-TSS (NM_001039201)	102.0	NM_001039202	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	7.44793049375599	7.49432124954276	7.68914140033225	7.67119080782063	7.5664432568927	7.7022323187567	0.149149293752475	0.509757476605649	0.840534651396129
Merged-chr10-117222570-2	chr10	117222070	117223070	+	710.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 1 of 6)	B4A|SINE|B4	1937.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	2.45205329798595	2.44737873116372	2.66085551454588	2.37825963697846	2.37197300925765	2.55173944273713	-0.532325308164223	0.509784427875299	1
Merged-chr5-92436232-4	chr5	92435750	92436750	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5A|LINE|L1	-1051.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	5.93673447905576	6.08825517993727	5.8725951995863	6.24767315901906	5.99986427912978	5.60042111988789	0.0232821633996871	0.943805078537065	0.987495247303971
Merged-chr7-30973954-4	chr7	30973435	30974435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017405)	promoter-TSS (NM_017405)	131.0	NR_038860	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	5.15835461039092	4.97784981277693	5.10636170782967	5.38502618851049	5.02415793402735	5.20412230445707	0.262725276287098	0.477803155923247	0.823367525497911
Merged-chr8-35428300-4	chr8	35427806	35428806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52565.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	4.0299788724191	4.11653916244513	4.38583628397611	4.09389683753706	4.13135832436228	4.52919601985872	0.216188640916501	0.661668654407459	0.906495637422278
Merged-chr1-52113810-4	chr1	52113234	52114234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5704.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	6.93479970262976	7.13913120250781	6.78857664837938	7.25179763070469	7.13909844065502	6.60756059982801	0.108006265068977	0.710092372723417	0.924219711396372
Merged-chr1-107389939-4	chr1	107389431	107390431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	27617.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	3.32310251893489	3.0178353705781	3.29038674506945	3.12668799901258	3.13992232020425	3.13335854742701	-0.34745845148199	0.59327040952025	0.878440533763274
Merged-chr7-28709680-4	chr7	28709184	28710184	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-7098.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	4.29856335591831	4.34478331127168	4.44785568545376	4.54838366781056	4.47493256679835	4.88828530701835	0.691991004373856	0.117637738805621	0.457872624686039
Merged-chr4-133108062-4	chr4	133107569	133108569	+	929.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22564.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	5.48187413675518	5.43154977402189	5.65612344221737	4.39006518853995	4.50865827458937	4.80600247313827	-2.08474812793889	1.67664110777952e-07	1.12417367684221e-05
Merged-chr4-53270764-2	chr4	53270264	53271264	+	766.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033139)	promoter-TSS (NR_033139)	-532.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.42604619160561	3.48376130926227	3.56000569082441	3.32871958247964	3.1399348002823	3.36202669319943	-0.847476367231579	0.16300256079234	0.536473264710429
Merged-chr15-6402946-4	chr15	6402444	6403444	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	16196.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.64223797191556	4.98432001834652	5.28949801117521	5.34165051365812	5.45855736004549	5.41528068441798	0.134717781113525	0.723449743486269	0.929080239793919
Merged-chr16-55789113-4	chr16	55788616	55789616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33022.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.25071264023888	6.95906778709553	6.54012835711386	7.24579959908967	7.04699486543529	6.70886857191987	0.099604079929549	0.74696472409481	0.936426570480179
Merged-chr2-31172270-4	chr2	31171809	31172809	+	985.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178760, intron 5 of 17)	intron (NM_178760, intron 5 of 17)	19993.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	5.72150856906296	5.39313074614212	6.11458867515605	5.70781926247421	5.73706227729883	5.98918436592621	0.0850882551598581	0.811636501353615	0.955304895434479
Merged-chr9-61965197-2	chr9	61964697	61965697	+	678.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18398.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	6.54306349872999	6.58539156170505	6.81107212105677	6.28437424203512	6.40377248567782	6.41735083071254	-0.443097458711882	0.100208133069866	0.422124098222477
Merged-chr14-79563755-2	chr14	79563255	79564255	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286412, intron 3 of 7)	RSINE1|SINE|B4	-23905.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	4.9048452557569	4.99406903591257	4.83302863380992	4.86837554662106	4.95038186266189	4.97252254156945	0.0283520847932804	0.940189132164117	0.986792088790777
Merged-chr19-9924763-4	chr19	9924251	9925251	+	789.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25218.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.73920857797646	4.66112362889567	4.40882835479791	5.13190194893632	5.06608049488333	4.82982928760064	0.899655387942374	0.0287153399408975	0.203135245729856
Merged-chr1-165693893-2	chr1	165693393	165694393	+	747.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	14201.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.08954141796494	3.07714526002816	3.71625866465812	3.18897707861871	3.07896340220095	3.78431005320405	0.218314049178185	0.765765045272912	0.942266152000567
Merged-chr9-31030380-4	chr9	31029906	31030906	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-238.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	7.72670443217072	7.73979988058554	7.7184860904714	7.64455795459851	7.57130497175817	7.71390533349037	-0.127314040975879	0.55555756999077	0.863289501518253
Merged-chr17-67353098-4	chr17	67352599	67353599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1360.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.63636543246821	9.15035476120522	8.29657867852267	8.6661503742323	8.85839336781561	8.38984543666314	-0.130384716678633	0.648281418138098	0.901726822360623
Merged-chr11-101986121-4	chr11	101985506	101986506	+	919.3020630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1050.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	3.30950709639149	3.52568378835445	3.09984874776869	3.26644147504372	3.29904545882754	3.29570459405782	-0.175290188002087	0.784481193817671	0.94762294289129
Merged-chr6-139882237-3	chr6	139881731	139882731	+	615.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207683, intron 25 of 31)	intron (NM_207683, intron 25 of 31)	40786.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	2.06363870777002	1.92485505184546	1.89100884970882	2.11764516617917	2.02482383577319	2.30541532910647	1.44498405965911	0.139025100511875	1
Merged-chr18-69574504-2	chr18	69574004	69575004	+	705.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	228344.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.48694025316361	3.44938841016407	3.41386449276316	3.61695310047953	3.2523838780485	3.59391253380627	0.148759876837316	0.804280779388732	0.953639350937323
Merged-chr2-58159302-4	chr2	58158810	58159810	+	891.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	812.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	6.6683129575035	7.03619334602931	7.10312911730607	6.11166754268756	6.44574911815672	6.40701809289759	-0.9734763882849	0.000772801042334955	0.0147925532851638
Merged-chr11-115711839-1	chr11	115711339	115712339	+	542.0	f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-3242.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	2.65461878605132	2.82677036761727	2.84955820038683	2.7657570781775	2.79054647290713	2.73815154793732	-0.0594431299992367	0.934671239466143	0.985727536128156
Merged-chr1-46850349-2	chr1	46849849	46850849	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3269.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	3.527890362685	3.72266972255972	4.02298654952139	3.63476761634236	3.50048865585567	3.76701159789833	-0.447078787646598	0.436107402690826	0.799461119181469
Merged-chr9-99496984-2	chr9	99496484	99497484	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028768, intron 17 of 21)	intron (NM_028768, intron 17 of 21)	26563.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.90157114347311	4.98064436809483	5.09287981435163	4.77777055501626	4.9029711484151	5.02350662498964	-0.191997860192739	0.613782851772272	0.887300906025089
Merged-chr19-4149536-4	chr19	4149037	4150037	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011778, exon 2 of 11)	exon (NM_011778, exon 2 of 11)	874.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	6.13435717886779	6.410102123155	6.46736302029108	6.30568326268831	6.5755594956129	6.10544506504645	0.0261918656939101	0.930899242604053	0.984709883914494
Merged-chr17-50025322-4	chr17	50024858	50025858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165139.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	7.17761467885495	7.19565904360447	7.02586856992592	7.04050892000998	6.92650636652868	6.87181327675527	-0.289358724841721	0.231134074021618	0.62693690919749
Merged-chr19-37048094-4	chr19	37047646	37048646	+	951.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 9 of 10)	B3A|SINE|B2	122067.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	5.62359682943761	5.82073647188706	5.55831864543762	6.90840116514745	7.50007088138497	6.9660686247158	2.41136961284694	3.89601705171623e-14	9.53469961291778e-12
Merged-chr15-6435938-3	chr15	6435428	6436428	+	855.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008702, intron 11 of 13)	intron (NM_001008702, intron 11 of 13)	-9405.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	2.78446975398995	2.8286584888639	2.9949713294787	2.59821489140917	2.74293942810656	2.89450164775656	-0.621494655384152	0.40017820787581	0.776372018141352
Merged-chr7-46607463-3	chr7	46606954	46607954	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	32353.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	4.98614282817489	4.95078239299267	4.70368659962464	4.87127419309324	4.87192774532878	4.64354165040801	-0.194611620310751	0.62605545320774	0.892797621675774
Merged-chr16-57550319-4	chr16	57549803	57550803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1061.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.91264405845236	7.94938496553353	7.27332084927477	7.64944652705328	7.86676941433229	7.34298536123738	-0.160287202558648	0.581561632050845	0.873316817586325
Merged-chr5-24451789-4	chr5	24451295	24452295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139153)	promoter-TSS (NM_139153)	-382.0	NM_001359881	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	7.93891029211621	8.03234404991908	7.74362507739492	7.85564897887054	7.6839458970504	7.64495632850822	-0.26345539999617	0.245265207490285	0.642393755173178
Merged-chr7-89235499-1	chr7	89234999	89235999	+	552.0	f0_balb.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	103288.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	3.70140948652783	3.77336877458945	3.64505759398434	3.2830967216366	3.45924175742455	3.49989688314062	-1.06443911681307	0.0664728265074913	0.336764663888096
Merged-chr10-4388095-4	chr10	4387618	4388618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359811)	promoter-TSS (NM_001359811)	-10.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	7.76160297310923	8.02411828835351	7.77039527559309	7.72999990819683	7.44195673680387	7.8836448989137	-0.244209485095908	0.319607673140968	0.713540438213725
Merged-chr11-70237867-4	chr11	70237381	70238381	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177603)	promoter-TSS (NM_001177603)	33.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	8.3464228423122	8.32106395545269	8.1151106436208	8.13350669041586	8.29612098100125	7.97907169227317	-0.168542616580095	0.448450519848055	0.80725470300829
Merged-chr7-68799192-3	chr7	68798718	68799718	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49980.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	3.51948213230398	3.40519309602373	3.34378283575439	3.09591744015487	3.23824873866536	3.24265239720303	-0.945390900934286	0.129929527307179	0.482137076320509
Merged-chr8-22397768-2	chr8	22397268	22398268	+	585.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	509.0	NM_001358971	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	3.71218253497082	3.80885309503762	3.73167037243164	3.68339143906111	3.17459235343759	3.53543491541889	-0.971848408262236	0.111873392879633	0.446763355477467
Merged-chr13-110395867-4	chr13	110395371	110396371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152804, intron 1 of 13)	intron (NM_152804, intron 1 of 13)	827.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.47363291931047	5.37560552265903	5.14474571613056	4.96045567095811	4.7201301908599	4.88097828163394	-1.04566974578295	0.00533017077142112	0.0639528261785737
Merged-chr15-102246290-6	chr15	102245785	102246785	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042727, exon 1 of 8)	5' UTR (NM_001042727, exon 1 of 8)	215.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	5.10070509956692	4.94487463715795	5.55444233070961	5.85738221394652	5.75310312941179	5.58974391936137	1.02350784143492	0.00516522606975997	0.0625436158889588
Merged-chr11-20898763-2	chr11	20898263	20899263	+	886.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67655.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.75988662125819	3.77242277877494	3.6550094714726	3.67151258705531	3.16107506238307	3.82646524224291	-0.515773752413123	0.415059589916125	0.786136540436176
Merged-chr17-24139909-1	chr17	24139409	24140409	+	545.0	f1_balb.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	1685.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	3.22811662115257	3.50262581877771	3.37771876075268	3.34506988295828	3.31387203397208	3.33635790639717	-0.175151749128667	0.773140827432053	0.943981747443949
Merged-chr1-87650715-4	chr1	87650261	87651261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	30449.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	7.51755220477803	7.41652135765244	7.53865424430658	7.50577837749483	7.6241070851759	7.87820196057491	0.267356970810475	0.255282308089063	0.652364778963479
Merged-chr6-24965047-4	chr6	24964513	24965513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CTG)n|Simple_repeat|Simple_repeat	-8888.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	5.61930276929815	5.6471320203587	5.71356297250284	5.90626703628156	5.89329267865837	5.61055372646885	0.295520751132604	0.347032630889327	0.735199858635661
Merged-chr2-167241152-4	chr2	167240648	167241648	+	858.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-611.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.865345968115	4.56505041933849	5.19955908232515	5.7637441897197	5.10069527233463	5.29529654580633	1.08204417471404	0.0119062344045641	0.11363775548692
Merged-chr8-37037645-3	chr8	37037157	37038157	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13419.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	4.20917744916062	4.11220589258535	3.97185478061604	3.29523610826148	3.05301860586441	3.38866713241311	-3.60740085283878	3.79808549100045e-07	2.31016884163133e-05
Merged-chr13-70638167-4	chr13	70637690	70638690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-556.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	7.02377787339481	6.81341260022355	6.93903260047729	6.89632024157986	6.87747402650896	6.49505180853997	-0.228285854387414	0.393846766840738	0.771958960126358
Merged-chr7-91675578-2	chr7	91675078	91676078	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-386816.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	2.979846980983	2.81519929340462	2.95788237653908	2.9140892749715	2.89086068857653	2.84779128735757	-0.158093306471973	0.819654261691993	0.957285308539088
Merged-chr18-20743565-2	chr18	20743065	20744065	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	RSINE1|SINE|B4	2839.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.27142569036254	5.68987126380063	5.26897143218171	5.31154640109227	5.59523246740696	5.12340273810703	-0.120981373039151	0.750056375793803	0.937491601830361
Merged-chr3-51327738-5	chr3	51327267	51328267	+	883.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	L1M4c|LINE|L1	12877.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.31124979538732	7.62909920568425	7.38446007359219	7.48201130905347	7.69916209767629	7.40890462668975	0.131719155107834	0.590008684864362	0.877060163469295
Merged-chr9-119249390-3	chr9	119248887	119249887	+	681.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-17695.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	4.14992873083167	4.30119248337645	4.39619042474805	3.99495443277149	3.89041023352951	4.29694579237575	-0.626252773414044	0.202607666124904	0.59252027125208
Merged-chr17-46521200-2	chr17	46520700	46521700	+	604.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081335, intron 21 of 40)	intron (NM_001081335, intron 21 of 40)	24411.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	5.32635994934508	5.46241646257542	5.4827679750938	5.05760572994447	4.97603970725348	5.07867948447246	-0.794542319233547	0.0235543172575761	0.179874048308406
Merged-chr9-83555804-4	chr9	83555316	83556316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	7478.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.46115882800189	5.29054322640506	5.03187746981102	6.12979544611599	6.39107771445928	5.56537215558761	1.45972319861151	0.000145961821569847	0.00388303993120002
Merged-chr3-61592527-4	chr3	61592027	61593027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	228020.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.46860408896609	3.29881601922807	3.50401849131228	3.5279204874601	3.28389755613029	3.57424754733764	0.143091594823405	0.810959683662476	0.955096593239846
Merged-chr9-107633509-4	chr9	107633011	107634011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1831.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	6.22048967979308	6.29541868485556	6.52769249806543	6.39498040728794	6.42977263885983	6.75764343089115	0.29792135071994	0.298475064901866	0.695174900936234
Merged-chr11-120625932-2	chr11	120625432	120626432	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153056)	promoter-TSS (NM_153056)	-930.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	3.70791149702778	3.71938386146892	4.0365819701679	3.84144466299028	3.68131216246819	4.01418510512999	0.0739015490539584	0.891284457981251	0.974795270136864
Merged-chr6-49258024-2	chr6	49257529	49258529	+	740.666626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	6023.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	3.77099607400827	3.50782632937704	3.95670442184449	4.48750192949798	4.50368114470716	4.59653102480044	2.31755139234776	9.13800234310291e-06	0.000370002383924529
Merged-chr3-79181851-4	chr3	79181356	79182356	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31063.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.41141294687094	6.38904356776517	6.16992483953823	6.79594067991979	6.83174435652621	6.49641225164449	0.62335200190731	0.0243892831395585	0.184015894654413
Merged-chr7-27489912-2	chr7	27489412	27490412	+	802.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018820, exon 2 of 2)	exon (NM_018820, exon 2 of 2)	2959.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	4.79726325066158	4.80157802328847	5.0098917243431	4.93853960297521	4.80937620063755	5.13872590023185	0.205494641637159	0.598776024249959	0.880808927175713
Merged-chr5-144013910-3	chr5	144013407	144014407	+	892.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 1 of 14)	intron (NM_177682, intron 1 of 14)	946.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	4.76433530023049	5.0882967296962	5.21627298694804	5.18235237284283	5.24504253121879	5.4820569205859	0.564885210846186	0.137820956364665	0.496248480556973
Merged-chr2-13558802-4	chr2	13558292	13559292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14128.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	5.90547786166427	5.68637101085798	5.39364044943514	5.54329564376226	5.40794822521831	5.74241742556069	-0.237869364706767	0.493540000048639	0.831372506357744
Merged-chr12-110447014-4	chr12	110446539	110447539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-140.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	7.54345793601023	7.78599117705958	7.76577144486547	7.73090262695311	7.98095134984328	7.71815412205643	0.173447919417558	0.455275795259344	0.810850567748235
Merged-chr8-46876133-4	chr8	46875636	46876636	+	935.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110751.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.23701999937819	4.48276731965328	4.5802036000136	4.36816347115466	4.19969412237661	4.48771927936234	-0.226098336906794	0.620302399810339	0.89005211387168
Merged-chr7-115019455-6	chr7	115018905	115019905	+	871.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	68131.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.32180152420103	5.46012612686646	5.64220597636205	5.59935753680921	5.92173584878216	6.22975453088749	0.843254341222169	0.0157081003072235	0.13717880041598
Merged-chr15-63625010-4	chr15	63624528	63625528	+	933.224976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5|LINE|L1	-145420.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.15673935375344	4.12970015386895	4.1179713235755	3.85400297067985	3.81778161248642	3.9972532180535	-0.753663673688401	0.125988966606051	0.474743679619431
Merged-chr1-171282349-2	chr1	171281849	171282849	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013919, intron 12 of 12)	intron (NM_013919, intron 12 of 12)	-1163.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	4.88101018025122	4.92033817044957	4.69301371254693	4.72403605323407	4.55238952654923	4.75946768437678	-0.389282387140797	0.333543546407511	0.724468518545896
Merged-chr6-121272087-4	chr6	121271510	121272510	+	898.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26104.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	3.98943933556186	4.21064405150207	4.43952941270249	4.14163926505854	4.12572056243831	4.50498852047514	0.11460092920787	0.816605608339732	0.956754861188725
Merged-chr7-46794919-2	chr7	46794419	46795419	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005247, intron 1 of 22)	B1_Mus1|SINE|Alu	962.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	5.77628531760458	6.08946291816984	6.07311197182838	6.16401847295537	6.40000457285127	6.33713195754351	0.545267026877509	0.0660213612383266	0.335347795471846
Merged-chr13-60645316-2	chr13	60644816	60645816	+	818.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	MTD|LTR|ERVL-MaLR	43105.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	5.60012485229788	5.47742285174442	5.32158783118461	4.72953744770798	4.76857336915449	4.90354232766553	-1.43032494272678	0.000101501407251445	0.00286976863560254
Merged-chr9-120029623-3	chr9	120029118	120030118	+	858.7333369999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6020.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	4.86314447805576	4.41986039673679	4.4876920142174	4.63700505558198	4.53836698016407	4.42121633791148	-0.176824993096672	0.690943943004654	0.91808248978516
Merged-chr7-129576377-2	chr7	129575877	129576877	+	768.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15486.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	5.88775657386196	6.16007878786422	5.78015154770594	5.75927701440905	5.8779955773417	5.42957285256452	-0.433927755830998	0.195980920750576	0.583775343803749
Merged-chr2-152687637-1	chr2	152687137	152688137	+	573.0	f1_balb.idr	TTS (NM_001159552)	TTS (NM_001159552)	489.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	4.0190633340758	4.21920792140475	4.61752958721452	4.26909914369324	4.28917489057751	4.28222330021121	-0.0455348517678933	0.925624569333837	0.983230173300268
Merged-chr7-126701261-4	chr7	126700742	126701742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301374, intron 6 of 10)	intron (NM_001301374, intron 6 of 10)	2978.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	5.12607301591095	4.66542372359075	4.84346403412739	4.85768396788196	4.71600206362734	4.67141061397932	-0.323166191819849	0.434521759779634	0.798440839184216
Merged-chr18-80311155-4	chr18	80310637	80311637	+	914.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	53117.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	4.74239485472461	4.70370462795159	5.30681269366634	4.86293157074302	5.21366620865013	4.92113615716061	0.175686556589804	0.681381661122911	0.914693263933768
Merged-chr4-86667796-3	chr4	86667279	86668279	+	686.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	2280.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	5.46956911360003	5.60152282870841	5.18077418953122	5.32119688431341	5.12431045148984	4.95135609299939	-0.591847532521387	0.111633598330074	0.446313714155454
Merged-chr10-118768002-4	chr10	118767497	118768497	+	960.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	100906.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.74862724180948	3.53118153185194	3.38005530415585	4.00017498613879	3.57059762994281	3.74074689021357	0.715445265704364	0.22831602098409	0.623387021297594
Merged-chr4-137909641-4	chr4	137909128	137910128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 2 of 19)	intron (NM_199307, intron 2 of 19)	47391.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.64326321272742	3.41425006157429	3.52810450169267	3.8447834571689	3.91993901455303	3.81529326064289	1.1231264426188	0.0415533496154811	0.254983120560837
Merged-chr16-65562723-4	chr16	65562229	65563229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026879)	promoter-TSS (NM_026879)	-32.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	7.35578103722136	7.47145039774868	6.97695032904883	7.02108717286452	7.21454922532264	6.7212035510125	-0.421239607336476	0.134453254213011	0.490248031745282
Merged-chr4-149120140-3	chr4	149119628	149120628	+	921.1333619999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104263, exon 4 of 4)	non-coding (NR_104263, exon 4 of 4)	6635.0	NM_007745	12854.0	Mm.6204	NM_007745	ENSMUSG00000028971	Cort	CST|PCST	cortistatin	protein-coding	2.85290156311002	2.59170487571003	2.98676428767067	2.64473754222365	2.63606711362534	2.70910151984052	-0.832399185705809	0.276219668940133	0.673554090002947
Merged-chr19-4067914-2	chr19	4067414	4068414	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-8467.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	3.0253477476625	2.94511008190844	3.00603378112995	2.87113865185284	2.88537362546329	3.01938964100128	-0.328481653965044	0.628281001443495	0.893577294752216
Merged-chr15-51692920-3	chr15	51692421	51693421	+	990.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	172540.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	2.41849995766273	2.60934478894301	2.53126210527763	2.25238106837902	2.0660298699023	2.47988768267685	-1.71278909171283	0.0767493704502644	1
Merged-chr9-45301315-2	chr9	45300815	45301815	+	969.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17785.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	6.48006093302184	6.33714747073499	6.18970608022614	6.11112057823123	6.21623547206943	5.92391726616233	-0.414236465365243	0.155862351222227	0.525912186557138
Merged-chr1-85735090-2	chr1	85734590	85735590	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177055, intron 1 of 5)	L1M5|LINE|L1	1516.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	5.37696035141119	5.79338005587009	5.70228840059072	5.80740073829931	6.06570775039401	5.50718125088281	0.347497690673894	0.324541627613527	0.717544999689449
Merged-chr4-117886947-4	chr4	117886450	117887450	+	998.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033617, intron 1 of 7)	CpG	379.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	7.63355258761269	7.98575244282553	7.7905531613025	8.06519764943391	8.22514293352499	7.92081270027957	0.381488992759506	0.103789697292149	0.429572877650473
Merged-chr7-24270409-4	chr7	24269894	24270894	+	929.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009567)	promoter-TSS (NM_009567)	-24.0	NM_009567	22755.0	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	2.64408559377947	2.43112975097139	2.81556778336504	2.46679971378747	2.39242168041575	2.77223676802374	-0.488452432052101	0.553577995655663	0.862344245296573
Merged-chr11-117117504-3	chr11	117116991	117117991	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	2319.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	6.37571596953642	6.56742882559662	6.61133104314634	6.84370154574488	7.16372349985257	6.30819862221835	0.494023710836913	0.120843873325231	0.464929397687784
Merged-chr10-94190346-1	chr10	94189846	94190846	+	684.5	f0_balb.idr	intron (NM_011629, intron 11 of 13)	(TTTTTG)n|Simple_repeat|Simple_repeat	-8663.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	3.09613405789554	3.13748032462443	3.02056103241563	2.83639143620765	2.73126679108158	3.0340588520446	-1.08258770244028	0.125571410308865	0.474177845108014
Merged-chr13-101905889-4	chr13	101905385	101906385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137668.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.07569003831871	6.28485014531529	6.08141464263029	5.87033866117478	6.26767457049672	6.07524744754626	-0.112233681047552	0.711391352392018	0.924661173262022
Merged-chr17-8901659-4	chr17	8901173	8902173	+	935.7374880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	MTC|LTR|ERVL-MaLR	51688.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.76498026022944	5.99811351146279	6.00662293118615	5.82431856523391	5.90743563294245	5.61073724489736	-0.22603977565567	0.471431003077887	0.81999367601546
Merged-chr1-184441397-4	chr1	184440904	184441904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116287.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.30201739047946	3.83291919930042	3.82178546197203	3.74396865638754	3.72171077850519	3.35844041459494	-1.22905915771349	0.0459376759096356	0.27087055833601
Merged-chr1-156681973-2	chr1	156681462	156682462	+	635.0	f0_balb.idr|f1_balb.idr	intron (NM_145413, intron 7 of 7)	L1ME4c|LINE|L1	-7623.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	5.97768992846672	5.63248949962399	5.75855196284348	5.15258186990601	4.70631609897154	5.039852850322	-1.64520540428701	9.25578373695313e-06	0.000374407026341466
Merged-chr11-83544462-4	chr11	83543938	83544938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13920.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	6.63113835364276	6.00408950965436	6.33228268539032	6.56670790270857	6.50221490710593	6.37280622175262	0.220263957097633	0.474663993648783	0.821664499521211
Merged-chr12-52480747-4	chr12	52480267	52481267	+	953.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136881)	promoter-TSS (NR_136881)	-158.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.54952697578513	4.78024786128698	4.75078195801996	5.04054190522542	4.89213719854495	4.69648786045725	0.44118287732088	0.276105407680829	0.673410731557322
Merged-chr7-102210364-4	chr7	102209945	102210945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022979)	promoter-TSS (NM_022979)	110.0	NM_001291358	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	8.27155284038731	8.3089708876046	7.73664406682439	7.9898410599591	8.01388306688486	7.59881646622034	-0.35584661073236	0.182728982583736	0.565548610698318
Merged-chr3-90491508-3	chr3	90491018	90492018	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	-505.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	5.41446164058568	5.43028226089493	5.02429620658369	5.54314732553252	5.64769252864064	5.27366338107555	0.37138326294275	0.308628028160113	0.70459916731452
Merged-chr9-108561070-3	chr9	108560577	108561577	+	838.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001114119)	TTS (NM_001114119)	576.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	6.05554574787619	6.16810182450571	6.04576220209057	6.04100486034503	6.45026793123578	6.3161869123097	0.322228592402507	0.275376187995607	0.672917149297773
Merged-chr2-167933334-2	chr2	167932834	167933834	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	1007.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	6.85250040677352	7.01512344887929	7.07565017555665	7.2700235152407	7.18301604437859	7.02843893293692	0.284920194814829	0.245136074225051	0.642381314494918
Merged-chr5-30851032-3	chr5	30850545	30851545	+	856.5833130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133350, intron 1 of 6)	MIRc|SINE|MIR	-10762.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	5.36353497695182	5.6459130562299	5.82471548547976	5.61441326519461	5.52583290121024	5.68916772980252	-0.0178803439828657	0.957642762027455	0.98996830630481
Merged-chr17-3156354-4	chr17	3155857	3156857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	41385.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	5.66262830562102	5.76860057420931	5.74369966949819	5.32929830377514	5.52631125838808	5.50837139068668	-0.498300530890807	0.122169323927748	0.467549678289947
Merged-chr5-102003560-4	chr5	102002973	102003973	+	980.107178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	66448.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.92095271799557	5.62581306582908	5.84923514954578	5.76558377115481	5.61576621691745	5.76165271643263	-0.165182257210417	0.601616329734821	0.881993261880913
Merged-chr5-4962167-4	chr5	4961679	4962679	+	968.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 10 of 14)	intron (NM_011074, intron 10 of 14)	-203963.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	1.85659621956188	1.59115084279875	1.66926291859733	1.90802831362692	1.75654549761023	2.09467646102475	1.91912410997772	0.0954799296031816	1
Merged-chr16-33899012-2	chr16	33898512	33899512	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	68026.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.24611807642335	3.03902055983052	3.35650267067081	3.27112939622592	3.06931876149917	3.53000514811367	0.325659275157052	0.621420402479395	0.890719347634072
Merged-chr14-65336998-4	chr14	65336505	65337505	+	732.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21671.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.81438214465787	3.57926365973539	3.76747181511159	3.48741092687349	3.60977219908314	3.68465338534512	-0.439359180395792	0.429393941358316	0.795682190695026
Merged-chr16-36477122-4	chr16	36476638	36477638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21746.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	5.37480235970102	5.2006186290227	4.7329547450385	5.38150819568795	5.07546667914181	4.84550749705563	-0.0341534402972071	0.93575184435715	0.985944885089269
Merged-chr17-10318836-4	chr17	10318332	10319332	+	956.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159517, exon 1 of 8)	exon (NM_001159517, exon 1 of 8)	529.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	7.09775325849106	7.08814205570266	7.09530913100531	7.32086471685103	6.98329786782207	7.16552582174136	0.100742550785787	0.681444336077667	0.914693263933768
Merged-chr6-29534503-2	chr6	29534003	29535003	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252382, intron 3 of 8)	intron (NM_001252382, intron 3 of 8)	5221.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.19738167510538	3.83572193054033	4.52481000439431	4.08098484485924	4.06961691005398	4.13737990569925	-0.313012199516161	0.548064248884097	0.859503669232264
Merged-chr13-38950694-2	chr13	38950194	38951194	+	796.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001170430, intron 3 of 9)	L1M2|LINE|L1	9843.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	2.87124523991088	2.76578045132753	2.78396411160294	2.8195715060928	2.86546959002556	2.91790673146284	0.293259813815111	0.676617766633795	0.912549881054299
Merged-chr12-73603697-4	chr12	73603159	73604159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	18863.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.96362840560274	5.69793217888777	5.47123756425	5.22433228296476	5.32307391998007	5.13435876611516	-0.954607997015357	0.00690482297957586	0.0773263668410175
Merged-chr14-40963538-2	chr14	40963038	40964038	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	3358.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.46872662001612	3.26608094768531	3.77787501261829	3.35827662606533	3.46980934651202	3.55197683817033	-0.190534941678465	0.755546092200399	0.939330014938602
Merged-chr6-50261765-4	chr6	50261300	50262300	+	999.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018769)	promoter-TSS (NM_018769)	-31.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.29215326987536	4.27972990234556	4.00475941310747	4.38538517097027	3.99134866561998	4.22287904881775	-0.00232472226812139	0.996230613549662	0.998961028701257
Merged-chr18-9495802-1	chr18	9495302	9496302	+	626.0	f1_balb.idr	Intergenic	Intergenic	-45648.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	4.03126441793146	4.09652279215269	3.59200885038558	3.4757650351192	3.53111489200442	3.48760848106135	-1.47623819041068	0.0116991073878299	0.112253151236917
Merged-chr12-21286234-4	chr12	21285680	21286680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	104.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	7.14938758931141	7.68851325163137	7.48063949465188	7.33157435423288	7.60276295562274	7.53761467842841	0.0536919681941277	0.8377577862222	0.96222208690411
Merged-chr4-101069632-3	chr4	101069182	101070182	+	755.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183024, intron 1 of 11)	CpG	644.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.08291180416909	3.98215315792552	4.23180666044528	3.88030335940403	3.80867341593941	3.98507118994745	-0.638623936641807	0.202637837597035	0.59252027125208
Merged-chr2-181536598-4	chr2	181536088	181537088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MYSERV6-int|LTR|ERVK	16103.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	7.06452449448281	6.95550711272755	6.79883697972476	6.91301824534666	7.15479586614185	6.88777991363295	0.0739766906423869	0.772324211532779	0.943716660313239
Merged-chr13-95494576-2	chr13	95494081	95495081	+	870.75	f0_c57.idr|f1_balb.idr	Intergenic	L1MC5|LINE|L1	-15926.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	3.72749835825731	3.87416956570475	4.10823218599709	5.93013898322412	5.95261087199744	5.61524773329438	5.35295758639444	8.37393105021645e-19	4.67636278406987e-16
Merged-chr9-103360775-2	chr9	103360275	103361275	+	813.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175833, intron 2 of 4)	intron (NM_175833, intron 2 of 4)	4204.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	2.6920676764668	2.58821322582606	2.62924115998443	2.77737206520812	2.87251512748764	2.82926231134798	1.02449489760543	0.165046808437665	1
Merged-chr8-25974445-3	chr8	25973940	25974940	+	737.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029884, intron 1 of 17)	(CA)n|Simple_repeat|Simple_repeat	2304.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	5.32883649348234	5.07471921648939	5.48038135903794	6.56527174905741	6.59424674332431	6.57550657238239	2.27895032913832	1.65121015106791e-13	3.65409293218242e-11
Merged-chr8-104129964-3	chr8	104129470	104130470	+	669.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	-24097.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.86704864063754	3.79166530197587	3.98742994674026	3.47545791271911	3.66067972759881	3.81910032182248	-0.742993896285204	0.175002493156263	0.554700648631989
Merged-chr6-108571372-4	chr6	108570867	108571867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51800.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	7.01744997761294	7.1808643565542	6.92107664620115	6.42833739212003	6.43623975485611	6.13384928078891	-1.09728505470017	5.24087923957838e-05	0.00164373569456026
Merged-chr1-151065637-2	chr1	151065137	151066137	+	790.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72202.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	2.76059026557988	2.8472695438009	2.93480078707385	2.69492047287311	2.70132281863133	3.27790645311849	0.323265455388345	0.672757868522928	0.910949422492829
Merged-chr2-145829712-4	chr2	145829265	145830265	+	854.607178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	43649.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.34146345765866	6.11482642429475	5.96217725549825	6.22930963726393	6.37667786142662	6.20627492507375	0.20098635450232	0.492532725472063	0.831122754432761
Merged-chr19-45559729-2	chr19	45559229	45560229	+	606.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356947)	promoter-TSS (NM_001356947)	835.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	4.21288739579585	4.5457830860222	4.29398053259137	4.5588650493938	4.61251416612793	4.62123110954681	0.58092351415302	0.18831835944442	0.573809654777037
Merged-chr10-74143843-2	chr10	74143343	74144343	+	953.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142748, intron 3 of 25)	RLTR41C|LTR|ERV1	321976.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	2.60344371009459	2.72144879209333	2.85320763423218	2.71365235905925	2.6662367511113	2.68374808082139	-0.205877635232383	0.781295380047228	1
Merged-chr2-157129271-4	chr2	157128774	157129774	+	763.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 2 of 16)	intron (NM_001139520, intron 2 of 16)	5948.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	6.37312235652086	6.38355309734255	5.86876254153101	6.23841794107692	6.59650406887311	5.90477786851392	0.0859733556013324	0.802871639720467	0.953400450869743
Merged-chr3-139042681-4	chr3	139042185	139043185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	32516.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	6.45250277331279	6.03834937301504	6.55296686312281	6.26256304798072	6.51353361096736	6.69060641834328	0.223277394511538	0.467825978273343	0.81815434317961
Merged-chr12-116282108-4	chr12	116281611	116282611	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	889.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	4.37371729800916	4.70176378021695	4.45367508794428	4.6312090194943	4.37033246029324	4.52117094451921	-0.0368519462382303	0.933490669707935	0.985496677684483
Merged-chr3-123332538-1	chr3	123332038	123333038	+	716.5	f0_balb.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	53452.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	4.80834847435208	5.57056082430658	5.54032939590994	5.73009032954175	6.24042911203034	5.73988250601469	1.06836928990354	0.00903235006337207	0.0938269683812471
Merged-chr18-65689812-2	chr18	65689312	65690312	+	843.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_207255)	TTS (NM_207255)	-8456.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.99871892643995	6.07590214526707	6.1413712030621	5.68432853774881	5.9531317443138	5.93784523429143	-0.356463449161426	0.235601365526051	0.631841167422156
Merged-chr17-73925297-2	chr17	73924797	73925797	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 8 of 35)	intron (NM_011723, intron 8 of 35)	24899.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	2.62096353793461	2.65683552368611	3.04364547047089	3.03679819952344	2.43828736861073	2.94508772199814	0.233590771604425	0.781089815674675	0.946145838976425
Merged-chr17-56185122-2	chr17	56184622	56185622	+	855.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1202.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	3.09887313176272	3.53411008552284	3.59055995245415	3.47509828953202	3.26631878734494	3.55819970244861	0.0412875940024269	0.948728574130907	0.988169196639905
Merged-chr7-122405250-2	chr7	122404750	122405750	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	116125.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	3.58914585359146	3.68189248652117	3.8276646614548	3.80938327743745	3.7232440373233	3.79747003235694	0.25917066847818	0.627368195779963	0.893213626166477
Merged-chr9-116102068-4	chr9	116101571	116102571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73292.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	6.98138426231944	6.99568396852194	6.90124464637041	6.49121756186444	6.87531496009518	7.06551399168956	-0.206199260475248	0.452681431580629	0.809456767794566
Merged-chr17-63492825-4	chr17	63492317	63493317	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7763.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	4.96696385739592	5.08627614524974	5.09350623406837	4.34943733692593	5.02143392210371	5.15710524308656	-0.346594690235025	0.438934160831319	0.800937323779458
Merged-chr3-88144729-4	chr3	88144281	88145281	+	843.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	2409.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	4.83566019266849	4.91262529433929	4.82954861789894	4.86855390299189	4.55480911003583	4.74121008231917	-0.319650587024752	0.424480078445451	0.792697196836987
Merged-chr2-129592095-4	chr2	129591596	129592596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291020)	promoter-TSS (NM_001291020)	-743.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.54403790887404	8.52254934117234	8.34337913953478	8.32534389058417	8.810401228506	8.28012779427909	0.0387342992393946	0.874143026314614	0.970637516461866
Merged-chr11-4980384-3	chr11	4979916	4980916	+	998.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 1 of 22)	MLT1E3|LTR|ERVL-MaLR	-6408.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	4.93689170397888	4.44073837112993	4.62771168192422	4.02402248646879	3.81555470089407	4.22633576632085	-1.81082918997798	0.000273830876390721	0.0064564804654914
Merged-chr17-35667579-4	chr17	35667096	35668096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175137)	promoter-TSS (NM_175137)	-4.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	6.39123998752094	6.6716571857872	6.26451241067175	6.2031397807971	6.11668976093266	6.36414596450632	-0.393792027242283	0.175363070909225	0.555215189841132
Merged-chr18-69290131-3	chr18	69289634	69290634	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54358.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.07425476122962	3.19721866958026	3.2242530661821	2.76745653725249	2.79073875389585	3.07147990653015	-1.38802841958137	0.0508630366855671	0.287250348411391
Merged-chr11-58094537-3	chr11	58094066	58095066	+	722.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9404.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	4.8995286990835	4.53333770190355	4.67411638971153	4.15184490310729	4.09630419688807	4.17557727778451	-1.49628467001681	0.00105585578746544	0.0187926520563475
Merged-chr14-20837865-2	chr14	20837365	20838365	+	660.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008873, exon 4 of 11)	exon (NM_008873, exon 4 of 11)	1203.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	3.2757764425137	3.04863471002683	3.32509046708958	3.52529087394181	3.21638362253213	2.89836062820131	0.0795730933372723	0.911935694247391	0.980211734893551
Merged-chr12-102356972-2	chr12	102356468	102357468	+	949.5	f0_c57.idr|f1_c57bl6.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	73327.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.01419869136321	2.97457146458662	3.03139691008206	3.76089188346449	3.51342967397434	3.58045051711926	2.66958138269386	8.95773669454176e-05	0.00258714111377796
Merged-chr7-73572760-4	chr7	73572261	73573261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14366.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	3.86791595664844	3.72845323546103	3.54736977342347	3.4776421962558	3.55849398514543	3.67318616917544	-0.547681892251284	0.331619776385412	0.72297130356206
Merged-chr4-33031403-4	chr4	33030908	33031908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036602)	promoter-TSS (NR_036602)	28.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	8.52764720290991	8.31038361908149	8.00709811337656	8.41006278747935	7.9727700532395	7.94544513152951	-0.244864842600872	0.347254943332239	0.735382424511812
Merged-chr2-150910289-2	chr2	150909789	150910789	+	708.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 1 of 6)	intron (NM_027014, intron 1 of 6)	695.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	6.21869287789656	6.03585646145087	5.98927112031497	6.5650127561905	6.77096156612641	6.0266674871745	0.687224992355442	0.0337930206959331	0.224804098662232
Merged-chr18-23871345-2	chr18	23870845	23871845	+	917.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	67375.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.35180673408216	5.68799019897455	5.57554025904826	5.52634563595165	5.81614643293632	5.74425172884587	0.292998467036338	0.380890183988833	0.762863284905926
Merged-chr11-69340561-7	chr11	69340073	69341073	+	999.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027827)	promoter-TSS (NR_027827)	-196.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	6.23010568828684	6.35959871184991	5.58892288861013	6.1328807194628	5.74400189853632	5.59104225613936	-0.458577015679468	0.215830060115281	0.609232929845416
Merged-chr8-77437165-2	chr8	77436665	77437665	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	RSINE1|SINE|B4	-79891.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.51764345087688	3.45534245672907	3.60829480899943	3.50390155920309	3.47016981913811	3.51978502318168	-0.102471370951275	0.856671121877461	0.966560323116284
Merged-chr7-19701206-4	chr7	19700705	19701705	+	885.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016871)	TTS (NM_016871)	-2017.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	4.94080992334822	5.14171492491622	5.18799180299138	5.2486507986536	4.73512472369603	5.08795985944564	-0.119747472366733	0.762751982065368	0.941663714620562
Merged-chr18-24152118-3	chr18	24151617	24152617	+	939.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30298.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	3.68459040466682	3.52023551080082	3.62645003857355	3.44096552413137	3.34851252486318	3.59222971892265	-0.565021582045623	0.326456852871766	0.71871363873492
Merged-chr6-71543896-4	chr6	71543375	71544375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025783)	promoter-TSS (NM_025783)	23.0	NM_025783	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	8.16451184903646	8.59441702311976	8.09139267699949	8.23279247225176	8.53135694527557	8.06669338253196	-0.015548278885821	0.952054708136668	0.989045247635785
Merged-chr10-77545114-4	chr10	77544588	77545588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 3 of 15)	intron (NM_008404, intron 3 of 15)	14740.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	6.15110101336544	5.74917694703894	5.9876450859651	5.6929617759375	5.58904449544126	6.25112445008047	-0.189037551352355	0.5932574630334	0.878436995890793
Merged-chr15-101377839-2	chr15	101377339	101378339	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7714.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	4.73399069487326	4.8253613797282	5.20176834353168	4.56824591812604	4.56795476423887	4.47978286644433	-0.888905993170416	0.0365545018463894	0.235292565145384
Merged-chr17-72934314-3	chr17	72933797	72934797	+	768.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	15992.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.97651157442226	3.51272467078461	3.5675928032615	3.63900784021213	3.41408040742421	3.46827848440673	-0.690329598401018	0.24796224639937	0.645106161833394
Merged-chr11-32552833-3	chr11	32552299	32553299	+	804.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	19533.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.69301616147625	5.82473022598823	6.34242502677459	5.75701235156219	5.59636315721013	5.88315985685228	-0.406715340209556	0.241727030833952	0.638803036215977
Merged-chr15-84126627-4	chr15	84126145	84127145	+	917.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	3.56384877401291	3.77106908742076	4.29720220991172	4.03017660220543	3.77811271325627	4.32369988764917	0.4391335491467	0.456619702397398	0.811759688005184
Merged-chr11-59662452-4	chr11	59661970	59662970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012027)	promoter-TSS (NM_012027)	-25.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	5.50440892266357	5.46406870782863	5.34639253791241	5.43277701215281	5.10713002142906	5.21515810855919	-0.373052551878652	0.285269264115291	0.682814628441307
Merged-chr17-43580741-4	chr17	43580239	43581239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10770.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	7.17054389816439	6.79872239127656	6.8187104988519	7.03406102133209	7.08876071917148	6.9364365013882	0.120137029303238	0.644674066996913	0.900287351502017
Merged-chr2-79636192-4	chr2	79635697	79636697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080558, intron 2 of 17)	CpG-8223	772.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	8.50829797338021	8.70904138358458	8.16236248632111	8.43597203538987	8.79569968109358	8.45741872592348	0.127857748004191	0.607688182221352	0.884675594273116
Merged-chr1-80757031-4	chr1	80756544	80757544	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	1509.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.87908598906394	5.97674014119596	5.29180809878865	6.05414902076482	5.77076009583307	5.9403564368167	0.281449245220672	0.428944652011905	0.795570481157701
Merged-chr13-113611397-4	chr13	113610904	113611904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7160.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.65638333392626	4.32667497680448	4.81847208455042	4.71767223541046	4.6315468392326	4.77438515020074	0.234641000706088	0.586245269375397	0.875449865187773
Merged-chr7-126898277-4	chr7	126897798	126898798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028389)	promoter-TSS (NM_028389)	-20.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	7.77688853182797	7.87731267464399	7.96705922730332	8.15711493601881	8.36200879715664	7.96997356523837	0.434659663076476	0.0566542136121462	0.306868930068307
Merged-chr4-109546715-3	chr4	109546213	109547213	+	920.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15416.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	3.58228443822919	3.22798938109242	3.65110482827271	3.32898996291913	3.78945677724112	3.81828245333539	0.580952666817883	0.355432096217496	0.742376471260239
Merged-chr13-104110195-4	chr13	104109715	104110715	+	857.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	474.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	4.90905045414674	4.97100335595501	5.30076963040121	5.06007734173456	5.10782158722662	5.24360251191413	0.159715301183464	0.671110174886714	0.910289924720412
Merged-chr2-90589573-4	chr2	90589056	90590056	+	975.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8909.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.17315501927003	3.76228993528619	3.74061929411189	3.63960046824465	3.75416357533308	3.46587986777497	-0.910573834878793	0.118279632898593	0.459528645854937
Merged-chr8-70792498-4	chr8	70791994	70792994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-61.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	6.61775018325851	6.62810603616169	6.57819304617341	6.53342091025203	6.61451489881377	6.40081451114729	-0.132128915156064	0.612370291875187	0.886696834959703
Merged-chr10-118982028-1	chr10	118981528	118982528	+	547.0	f1_balb.idr	Intergenic	Intergenic	-54885.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	5.16843051149828	4.74550477791061	4.80200900213283	4.98130919738295	4.81256192137665	4.70606619847079	-0.185276006546409	0.651518647983802	0.902848924330689
Merged-chr19-44930987-4	chr19	44930498	44931498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-121.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	7.86083399026763	8.02279213069012	7.72687620231777	7.87233525680311	8.04668101748135	7.70143862229196	0.0105886420141627	0.963918023755116	0.991222546396483
Merged-chr6-87723800-3	chr6	87723300	87724300	+	806.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-7069.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	5.97343393999884	5.70687766968313	5.33916777068321	5.26728495219643	5.27479625680389	5.49684876573166	-0.697076627825723	0.0534447681666729	0.296449054703854
Merged-chr10-120163703-4	chr10	120163224	120164224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37873.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	5.41545997280738	5.44551239244739	5.26618769777726	5.97129313783897	5.8158748766767	5.87333960032856	0.926541865329666	0.00384521279016531	0.0504259205428014
Merged-chr5-103817963-4	chr5	103817453	103818453	+	873.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 6 of 19)	intron (NM_133919, intron 6 of 19)	63380.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	2.80473069525921	2.85843839026086	2.91567665902406	3.01462218645295	2.82981404958464	3.10455715818555	0.598003617392277	0.390313971616813	0.769585097056154
Merged-chr4-136355162-4	chr4	136354673	136355673	+	930.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43575.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	5.38441611024853	5.72270420012532	5.49641961411331	5.19567564299379	5.24197162581038	5.41360556422374	-0.51794266109886	0.135515429598401	0.492056548526085
Merged-chr14-70160252-3	chr14	70159750	70160750	+	840.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-748.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	4.64800350430086	4.38777351139454	4.58008866086218	4.75725521469289	4.89951364555595	4.56248509973593	0.519941918763326	0.220121962819656	0.614507907782981
Merged-chr17-64945841-4	chr17	64945326	64946326	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109755.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	2.41361590570395	2.3423539181627	2.69436821947785	2.24998722486838	2.35716135537262	2.26747920759549	-1.23861584999824	0.155977820184677	1
Merged-chr16-44063330-4	chr16	44062797	44063797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-21289.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.27790544247065	4.57122871076018	4.01999724751099	4.79118320554337	4.58012719037736	4.53330202023215	0.790648846803252	0.0994263469691883	0.420486275914217
Merged-chr7-49253190-4	chr7	49252724	49253724	+	998.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	7035.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.31293149482281	4.93972367847338	4.54380701047734	3.93588621530365	4.04371404707204	4.21833604121984	-1.50048068035087	0.00262439394279749	0.0380436535178211
Merged-chr8-3676985-2	chr8	3676485	3677485	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025701, intron 1 of 1)	intron (NM_025701, intron 1 of 1)	508.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	5.67445101129015	6.27349630336162	6.10481370217485	6.21722571215159	5.95854525248678	6.4506753744357	0.29279289017225	0.387349787324114	0.767583116195701
Merged-chr11-101678884-2	chr11	101678384	101679384	+	971.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13343.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	4.37676913473441	4.39855598076726	4.74559686440608	4.80294680907211	4.7547622631641	4.48844736674585	0.459208041954364	0.29197138596635	0.689240668505676
Merged-chr13-98874399-4	chr13	98873897	98874897	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	16645.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	5.87355654799152	5.40932689690909	5.72613611399704	5.31275335837099	5.63851070872071	5.65860634514313	-0.253978662573041	0.469635529230696	0.819030003012138
Merged-chr16-38714184-3	chr16	38713696	38714696	+	825.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1161.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.32633839349911	3.89984118001691	4.46731589005402	6.51835063980711	6.75245858227428	6.21079130705397	5.24073984764148	6.75610729291724e-25	1.14726974618175e-21
Merged-chr4-101155254-4	chr4	101154756	101155756	+	965.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86218.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	6.3302416081561	6.60909001533053	5.96708334454994	5.79581127913234	5.84954134320423	5.79724783275822	-0.899048401989447	0.00496857115990262	0.0609501502393008
Merged-chr10-34331114-1	chr10	34330614	34331614	+	830.0	f1_c57bl6.idr	intron (NM_001347463, intron 5 of 10)	L1_Mus3|LINE|L1	33693.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	2.34754381173951	2.24534912933235	2.26675219075125	2.40678499479368	2.49053068283545	2.59995699010641	1.37145454112015	0.103569860397108	1
Merged-chr7-90209758-2	chr7	90209258	90210258	+	636.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_146194)	TTS (NM_146194)	55674.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	2.41909985765848	2.2751802528535	2.50775186849754	2.44444782512745	2.27449813454168	2.70262036849597	0.48220906586041	0.568577741054179	1
Merged-chr6-8508530-4	chr6	8508012	8509012	+	893.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040452, exon 2 of 2)	non-coding (NR_040452, exon 2 of 2)	649.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.58144731855275	4.79649345846084	4.707274401814	4.96801547408788	5.16309588761527	4.85333839244848	0.697596417093592	0.0787334171367068	0.370797496780117
Merged-chr16-17232966-1	chr16	17232466	17233466	+	586.0	f0_balb.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-621.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	4.52962563538043	4.8735791465969	4.46772203729234	4.43214775608908	4.58740548053786	4.70065333588089	-0.170943684762956	0.696075426714306	0.919291538728398
Merged-chr9-65346113-4	chr9	65345605	65346605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	37.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	8.39996738226225	8.06118296655878	8.3094968537869	8.32861119361288	7.97032818834873	8.23655475291552	-0.111555462866623	0.633492311620792	0.896059441151508
Merged-chr17-27588624-1	chr17	27588124	27589124	+	599.5	f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-22897.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	3.93755556087041	3.55212120725993	4.11104588199538	4.38373499091202	4.37547630107051	4.03490333849598	1.15581673381213	0.0328064775622018	0.220670372307262
Merged-chr6-82775444-2	chr6	82774944	82775944	+	853.583374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-990.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.75240467476146	5.92182641598937	5.17316948165674	6.19224748621315	6.10613292770629	5.31817208524462	0.483301874498845	0.252951656956922	0.650358193791754
Merged-chr16-84835373-4	chr16	84834882	84835882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	243.0	NM_016755	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	8.08593587548884	7.98857480230583	7.95150570929133	8.01407606991324	7.87588011580071	7.60847826272996	-0.230357060346479	0.315510867788747	0.709834518424648
Merged-chr6-72153607-4	chr6	72153114	72154114	+	969.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011375, exon 7 of 7)	exon (NM_011375, exon 7 of 7)	-30417.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.30285000393125	6.7604759880166	6.46034435948401	6.39176722313305	6.44321861574582	6.03553389813981	-0.346439178439624	0.256128603199659	0.653139712382384
Merged-chr19-42564151-4	chr19	42563636	42564636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177464, exon 2 of 7)	exon (NM_177464, exon 2 of 7)	45331.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	5.25640508230647	5.37566807172932	5.28388773456884	5.33625503796562	5.43479621593176	5.37873516451651	0.153804120690982	0.648574186434513	0.901862679938551
Merged-chr16-91406972-4	chr16	91406477	91407477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	742.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.38032557332306	8.2970855649107	8.16949724430004	8.49518270286942	8.52366907106586	8.25128732874717	0.203289122751156	0.3451895282988	0.733666487940844
Merged-chr5-146845087-4	chr5	146844588	146845588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	17.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	4.44862487743379	4.7616082214328	4.58947715263772	4.80578325744375	4.9479797504386	4.77797175887594	0.559957977773762	0.173050974764391	0.551792788730798
Merged-chr10-80323041-4	chr10	80322536	80323536	+	949.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008793, exon 12 of 15)	exon (NM_008793, exon 12 of 15)	-2488.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	5.73955435138769	5.67700714561063	5.72038262598426	5.67378959228554	5.65865604592223	5.08179272680429	-0.364760326462595	0.308017102646339	0.70399988465522
Merged-chr11-75652591-2	chr11	75652097	75653097	+	888.8333130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	447.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.57710173990594	5.67587677767564	5.61439916118256	5.91483253846782	5.96290605919922	5.75877677381609	0.479061192957279	0.119907360946657	0.462917073708971
Merged-chr8-3461136-3	chr8	3460627	3461627	+	840.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026951, intron 3 of 4)	B1_Mur1|SINE|Alu	6521.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	3.20722756071561	3.33982541979549	3.35592418665058	2.89768987296817	2.8334470148215	3.09153903286241	-1.69927044021083	0.0139409950773393	0.126391176864286
Merged-chr6-88008865-3	chr6	88008345	88009345	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10950.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.17662127743849	4.25567917935232	4.25875381196657	4.12915388672883	3.980057770591	4.49033428297966	-0.0697720971409639	0.886328624439316	0.973769270121239
Merged-chr1-171619874-4	chr1	171619377	171620377	+	838.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12467.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	6.35976941333364	6.31018611082037	6.42405236235155	6.26770089843879	6.63135425293299	6.3904971864681	0.139386207262924	0.618988271302652	0.889547082531106
Merged-chr16-91694899-4	chr16	91694392	91695392	+	903.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026994, intron 8 of 11)	intron (NM_026994, intron 8 of 11)	5994.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	3.65113515226429	3.33317795781083	3.75431250728586	3.4601858913293	3.29015401206003	3.22817276345401	-0.958208927526656	0.124720163850438	0.472401465480119
Merged-chr10-8926367-6	chr10	8925833	8926833	+	898.7777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-40263.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.93820310078269	3.71024779199573	4.05789200311608	4.77066805608448	4.95105800023794	4.78319952137712	2.57096066872217	9.79150237521435e-08	7.01749637930091e-06
Merged-chr2-33371009-3	chr2	33370505	33371505	+	978.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	(CCA)n|Simple_repeat|Simple_repeat	489.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	4.27142823943286	4.22620219987562	4.12901989981148	4.40579509777025	4.14151818348076	4.19833296769563	0.103343814777171	0.82467269001543	0.958596193929081
Merged-chr9-106353979-4	chr9	106353482	106354482	+	958.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14650.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.93892224924276	5.03583735292132	5.01421707475625	4.91851824160648	4.51879346280587	5.11127346950962	-0.303865913918901	0.462148878071568	0.815111700283474
Merged-chr13-38037956-4	chr13	38037432	38038432	+	860.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	943.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	6.31217031945856	6.375355162488	5.95020241457582	6.58404253209783	6.68203075466176	5.85014505980912	0.330439014848808	0.345571693284191	0.733978187022436
Merged-chr18-65679470-4	chr18	65678881	65679881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	Tigger7|DNA|TcMar-Tigger	-18887.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.61552195827343	8.54678548636603	8.09976484947318	8.59314615316969	8.70679079926455	7.84399634942396	-0.00212433159548836	0.994318160461257	0.998918571480046
Merged-chr11-103953980-4	chr11	103953473	103954473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008740)	promoter-TSS (NM_008740)	83.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	7.06315342336175	7.03912554343479	7.26513842554906	6.93960127592328	6.82122768514493	6.80439551287252	-0.402027340218985	0.102804485777247	0.427516364806677
Merged-chr17-74432770-4	chr17	74432254	74433254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 8 of 8)	MLT1A0|LTR|ERVL-MaLR	26354.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	7.39153078082755	7.34239187144608	7.14597246199951	7.01670266793333	7.16368438474935	6.91746398680063	-0.388684597447723	0.112651669751859	0.448338447691312
Merged-chr9-66885410-2	chr9	66884910	66885910	+	572.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	34295.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	4.61929929644806	4.84012279700907	4.6071814766948	4.36892473174179	4.41021860086754	4.11760503821264	-0.952785120232736	0.0345126397335251	0.227643894327956
Merged-chr7-102429432-2	chr7	102428932	102429932	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009287, intron 10 of 11)	intron (NM_009287, intron 10 of 11)	-12263.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	3.96954106868544	3.73432364239976	4.0496157352689	3.85562275852963	3.73865606026393	3.77742794102532	-0.406923274647239	0.438974988796591	0.800937323779458
Merged-chr19-55643620-4	chr19	55643100	55644100	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045318, exon 3 of 4)	non-coding (NR_045318, exon 3 of 4)	58604.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.91443094017815	7.94016041657602	7.74758610524608	7.76564273126837	8.41979229221144	7.83864079073167	0.255994759433671	0.340683777965191	0.730363944990792
Merged-chr11-69090486-2	chr11	69089986	69090986	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009497, intron 4 of 4)	intron (NM_009497, intron 4 of 4)	1958.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	2.92702161779756	2.94612815408738	3.25243516246522	2.9319578550803	2.69369719232865	3.52248134483696	0.212230288413309	0.785648912223739	0.948152561943419
Merged-chr9-65826784-4	chr9	65826274	65827274	+	772.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 1 of 9)	intron (NM_172536, intron 1 of 9)	790.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	5.38524997858501	5.45386182012642	5.90566332237672	5.55310394666748	5.53755067683877	5.73348731091752	0.0318917445383459	0.927111267144744	0.983578869536024
Merged-chr2-167953147-4	chr2	167952632	167953632	+	846.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	20805.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.79673156800359	4.57300079500279	5.01624573575009	5.01703125211922	4.49673745622726	4.98020462606017	0.10136184682355	0.817172266866378	0.956754861188725
Merged-chr5-90899599-2	chr5	90899104	90900104	+	819.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4295.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	5.65770548923743	5.48451128215423	5.5251522733395	5.22036017459535	5.29823828143669	5.28609633892034	-0.564624606766427	0.0917041642945242	0.403261817071069
Merged-chr1-134083807-4	chr1	134083299	134084299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4644.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	6.20763007735462	6.27227816315128	6.44470165142952	6.09435624704661	6.0144816923475	6.39829013875267	-0.231504077728892	0.430913024160988	0.796614699034595
Merged-chr4-53186378-2	chr4	53185878	53186878	+	667.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-26483.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.76543404967644	3.05728455817782	3.15083956238346	2.79945900976175	2.76461052814494	2.68362108360057	-1.23280564504987	0.100071416803028	0.421923070303867
Merged-chr2-163919114-4	chr2	163918663	163919663	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	-480.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	4.37326523824587	3.94569060117516	3.68083936117693	3.85314029952003	3.25670677067089	3.38486500215199	-1.65929957641998	0.012816208081301	0.119727297858863
Merged-chr10-123063068-4	chr10	123062553	123063553	+	909.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	13452.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	5.19403048460702	5.3204038034174	5.36102789057601	4.9167518830775	4.89983022812513	5.24421993352102	-0.568862930460192	0.122977389968452	0.469148413250216
Merged-chr9-70012603-4	chr9	70012101	70013101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	53.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	7.47622000199155	7.37609018413126	7.47178953452115	7.58589456786525	7.37282545384097	7.70555254667662	0.167448401494552	0.474957896104822	0.821727753368561
Merged-chr4-142098006-4	chr4	142097498	142098498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13694.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	7.55603100758575	7.21530282437499	7.33625246692146	7.56785474223146	7.62122720662303	7.3483658518555	0.21283833624073	0.384325723264195	0.765450112053405
Merged-chr9-22054504-4	chr9	22054001	22055001	+	941.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2478.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	3.66988009156649	3.27341309976248	3.18448492890172	3.36831620051556	3.10229772227418	3.37687437564778	-0.445549974447749	0.498785935847626	0.834135868113764
Merged-chr17-10702984-4	chr17	10702488	10703488	+	993.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	137203.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	6.6019557773941	6.78355676323624	6.61636318479859	4.94371852335853	4.89672643495042	5.03953141183951	-3.19682887963091	9.73631750883543e-22	8.71117749758257e-19
Merged-chr3-98031386-4	chr3	98030929	98031929	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17891.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.65690138650411	5.333363857483	5.61457984054359	5.4192647115353	5.4191452172944	5.15423648030349	-0.372658777488284	0.287941712277361	0.685252288160501
Merged-chr18-77777754-2	chr18	77777254	77778254	+	580.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007505, intron 3 of 11)	intron (NM_007505, intron 3 of 11)	-3869.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	2.25259408721502	2.32257008787119	2.52944427013093	2.30001544360391	2.18692513101882	2.35306577576538	-0.602978793647607	0.480111011085764	1
Merged-chr17-45599614-4	chr17	45599144	45600144	+	968.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199115)	promoter-TSS (NM_001199115)	-41.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	5.94571721303908	5.48770629768546	5.81117247192048	5.87543102649879	5.72444187742351	5.51655791587755	-0.0740597658953478	0.827253613840214	0.959401967627617
Merged-chr6-116674410-1	chr6	116673910	116674910	+	1000.0	f0_c57.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.01631481603965	7.16693390191059	7.38407658488494	7.40076271014151	7.41404132166405	7.59672900672619	0.414053294570257	0.0901839544553197	0.399341518935567
Merged-chr10-34250245-2	chr10	34249745	34250745	+	641.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	-31945.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	5.19366305932406	4.56550526110353	4.80090311228976	4.95824776182474	4.89970320245992	4.78839974879144	0.00203117930095701	0.99620044909867	0.998961028701257
Merged-chr14-118944771-2	chr14	118944271	118945271	+	624.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	6839.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	3.23522804196302	3.29663191523916	3.38556806370039	3.31229093040517	3.58969012896048	3.34424252343837	0.485754078579621	0.426070378795186	0.793574876043977
Merged-chr3-51215607-2	chr3	51215107	51216107	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8840.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.40668879216785	4.48643335670124	4.623076466774	4.37605170792923	4.05113512620435	4.79568818643961	-0.183134899565173	0.708501904567243	0.923708659245088
Merged-chr6-101555875-4	chr6	101555381	101556381	+	742.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177984.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	6.14170831226897	6.03854438647072	5.73578746574089	5.47263777392394	5.52277265257339	5.12254326775097	-1.08455651063218	0.00180625427545762	0.028565662602216
Merged-chr2-29870306-2	chr2	29869806	29870806	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_207298, intron 1 of 11)	intron (NM_207298, intron 1 of 11)	812.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	3.55391062789061	3.26322173116642	3.43134602945679	3.06673444618493	2.9105362963309	3.44929648373984	-1.09855029906044	0.111473360197716	0.445979197775341
Merged-chr13-41268017-4	chr13	41267513	41268513	+	995.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	18169.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	4.70904299709761	4.98041148794035	4.51566235320737	4.76013606872032	5.07133704226889	4.87496048348135	0.342997027779082	0.414968661170383	0.786115461363139
Merged-chr10-41576049-4	chr10	41575543	41576543	+	846.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045341, exon 3 of 4)	non-coding (NR_045341, exon 3 of 4)	8027.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	3.16618326913337	2.69072727863739	2.83555992094449	3.44866718284535	3.08493259083866	3.16714998437025	1.43928348454494	0.0605099167675293	0.318564324858752
Merged-chr6-34874642-4	chr6	34874116	34875116	+	995.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347101, exon 4 of 4)	exon (NM_001347101, exon 4 of 4)	3449.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	6.80825351704896	7.05076854611554	6.47066779674392	6.08165912325487	6.44437834246929	6.20519710569135	-0.877271739684999	0.00395683101360632	0.051506098220149
Merged-chr13-44731205-4	chr13	44730712	44731712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360281)	promoter-TSS (NM_001360281)	-59.0	NM_001360281	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	7.61195225050137	7.50645783314478	7.53952383454856	7.65475139632191	7.86385411300284	7.49494671671049	0.195686038321854	0.402156837618713	0.77787096574423
Merged-chr1-88226655-2	chr1	88226155	88227155	+	860.375	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001281466)	promoter-TSS (NM_001281466)	-365.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	5.62590457746314	5.65134451634126	6.11143528654341	6.02212731603343	5.82711841779479	6.15130842613434	0.348508142543063	0.292108663008227	0.689330051945222
Merged-chr17-36843918-3	chr17	36843421	36844421	+	846.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	6775.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	5.26402791427461	5.44361099143389	5.0393506965846	5.7978657446373	5.92465360927048	5.48809583854529	0.922276867036972	0.0100429712629388	0.100685252919027
Merged-chr13-59667947-4	chr13	59667452	59668452	+	660.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035122, intron 1 of 9)	MTD|LTR|ERVL-MaLR	7832.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	3.11760200106585	3.28062833605136	3.52638017237816	3.33677268681193	3.39121046153204	3.38523710822289	0.236856779975558	0.703331622054034	0.922108924938678
Merged-chr3-144617241-4	chr3	144616729	144617729	+	915.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46802.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.01661756193199	2.90965920426177	3.05350189061457	3.03387671329564	2.99581729907542	2.68121104533316	-0.353069855726364	0.630843891659402	0.894912420650784
Merged-chr15-101246999-3	chr15	101246508	101247508	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19838.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	7.41317735529827	7.24984974422341	7.16691662693002	7.68469488206535	7.76225718727606	7.53906060200871	0.563120502658751	0.0158236732048098	0.13789863846102
Merged-chr12-110992336-4	chr12	110991851	110992851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2047.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	5.08670480026012	4.95242767322789	4.95538329180542	5.096503136041	5.04852014127906	4.86967984287105	0.0278883546743334	0.940521045980002	0.986852666940686
Merged-chr7-43310626-3	chr7	43310116	43311116	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	2684.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.14464551046709	4.12714219348275	4.26768294058838	4.25418222470273	3.7678707213777	4.41752371317917	-0.034467194582029	0.947269506288271	0.988008807662239
Merged-chr16-30787690-4	chr16	30787186	30788186	+	921.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187963.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.72372809914451	6.31423801886955	7.03217137521003	6.71653598037204	6.65975127945399	7.05328975402563	0.156969649067935	0.613629626865627	0.887300906025089
Merged-chr3-132035403-4	chr3	132034970	132035970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49822.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	4.06108163050525	4.02279787706242	4.06046828140677	3.80283605064575	3.8474427311233	4.1730945633865	-0.318238709312978	0.529790581375024	0.851048470960073
Merged-chr11-110997481-5	chr11	110997077	110998077	+	930.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252209)	promoter-TSS (NM_001252209)	90.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	6.85815277975742	6.74828199136765	6.84964602093358	6.51653648420747	6.26291036990064	6.39822802840775	-0.678826100137199	0.00983401496166372	0.0993044559381208
Merged-chr13-96437156-1	chr13	96436656	96437656	+	892.0	f0_balb.idr	intron (NM_001042714, intron 7 of 13)	MLT1H1|LTR|ERVL-MaLR	34004.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	3.41783635209214	3.80245337820069	3.8616442205244	3.8298753172551	3.67080488761175	3.73114870539577	0.130540052065603	0.817935653880885	0.956835450074313
Merged-chr3-106788774-5	chr3	106788382	106789382	+	885.9799800000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1267.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	8.06213199447478	8.4877503463543	8.03182228723295	8.40992191818891	8.74157128616089	8.20886376520119	0.365827467451733	0.160189266781799	0.532820135528459
Merged-chr4-126131499-2	chr4	126130999	126131999	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16504.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	6.21288414732647	6.10023641053478	6.61279939826471	6.37540920430702	6.3276391176412	6.15957599480074	-0.0327022051854964	0.91378297676224	0.980796798598326
Merged-chr10-41490406-4	chr10	41489908	41490908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009213)	promoter-TSS (NM_009213)	-31.0	NM_028430	73075.0	Mm.359762	NM_028430	ENSMUSG00000078451	Ppil6	2900084F20Rik	peptidylprolyl isomerase (cyclophilin)-like 6	protein-coding	5.73190920618397	5.63718062990007	5.25855947531034	5.33228992255049	5.33289446886961	5.22016509853704	-0.522639026296179	0.137994213900719	0.496485603418127
Merged-chr10-128923536-1	chr10	128923036	128924036	+	1000.0	f0_c57.idr	promoter-TSS (NM_015740)	promoter-TSS (NM_015740)	-12.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	7.63782507440845	7.93759501047743	7.65103508286749	7.7776147350229	7.8041856969524	7.52209372357499	-0.059061419417862	0.804248345348359	0.953639350937323
Merged-chr13-111966759-3	chr13	111966271	111967271	+	888.644409	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98835.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.31863326279434	5.54852476436121	5.14691155772711	4.54851375599783	4.69429026520995	4.63476901851454	-1.5794902657059	6.47668801741887e-05	0.00196468194149978
Merged-chr2-164793414-2	chr2	164792914	164793914	+	558.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133924)	TTS (NM_133924)	7393.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	3.36426428982482	3.22064962376392	3.66527302420691	3.64251758556346	3.55267470462533	3.29737519420795	0.320950780617203	0.607364792309138	0.884581207370863
Merged-chr14-55562099-2	chr14	55561599	55562599	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199009, intron 2 of 14)	MTE2b|LTR|ERVL-MaLR	1176.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	3.05297338180808	2.58056760495949	3.05605057198213	2.8494692357581	2.6459300693783	3.07193144248687	-0.235416161109639	0.765400495801877	0.942148336413151
Merged-chr8-92856453-4	chr8	92855954	92856954	+	965.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	1121.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	6.5612171302907	6.48666876489836	6.91320195654705	7.06897535270767	7.30835458740772	7.16346734789191	0.818518073591554	0.00205823502208579	0.0316389469273443
Merged-chr6-87807932-2	chr6	87807432	87808432	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	1825.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	6.33897447427885	6.06275251051755	6.24480554517292	6.37451518327749	6.65894641928784	6.63024465699005	0.560349011383362	0.0474446485869105	0.27591377688144
Merged-chr2-129558745-4	chr2	129558266	129559266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-22164.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.07743688859246	4.91494095280095	4.40152374307084	5.02718530957791	5.0275193306243	4.79204275674554	0.253964875632367	0.562821856340784	0.865755360453189
Merged-chr19-3948314-2	chr19	3947814	3948814	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 10 of 10)	PB1D9|SINE|Alu	-10494.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	2.34612430545195	2.34960303790034	2.75292411321268	2.44935554964995	2.16992460145515	2.59005691720416	-0.482165917746394	0.588043343484655	1
Merged-chr7-30430246-1	chr7	30429746	30430746	+	743.0	f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	6971.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	3.2323078841675	3.07170242760043	3.41733494815101	3.634184273223	3.29336889548529	4.21932210564966	1.87860514251297	0.00617709145971592	0.0712480490962076
Merged-chr6-87512450-2	chr6	87511950	87512950	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037727, intron 1 of 10)	L1M5|LINE|L1	-16123.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.1937020984397	5.11417415615475	5.40934672248789	5.26614721147806	5.0724910405828	5.41490092834756	0.0242950538597943	0.946746657662938	0.988007649185823
Merged-chr6-48602011-4	chr6	48601531	48602531	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	8148.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	3.4656198202101	3.21256855359824	3.41770314756329	3.42219950580778	3.34915004506918	3.54171697141731	0.256852825969783	0.669222156079819	0.909570225267722
Merged-chr10-40525170-2	chr10	40524670	40525670	+	895.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45192.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	3.90855983338171	3.92198342597603	3.89786038335597	3.81683651276647	3.84852932916545	4.01454069295808	-0.0613419938685768	0.903465307178248	0.977829235846862
Merged-chr1-58727948-2	chr1	58727448	58728448	+	787.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2604.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.94928865750879	7.91816974573929	7.8646073548516	7.82030851400524	7.87475975116721	7.74413024517147	-0.136413622109192	0.520104389901191	0.846172588154387
Merged-chr1-78914112-2	chr1	78913593	78914593	+	596.0	f0_balb.idr|f1_balb.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	97182.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	3.85037714994609	4.11437143815049	3.94277929683641	4.14748522068585	3.97860228089725	3.74732756784795	-0.00876422896742344	0.986645753176946	0.997070852223121
Merged-chr5-64206848-2	chr5	64206348	64207348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	MTE2b|LTR|ERVL-MaLR	-23509.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.6123608479128	5.84154609659039	6.17832772656103	6.10177473361146	6.11323618869421	5.91044635967143	0.287234675999929	0.374414598955358	0.758067254297817
Merged-chr14-122633322-6	chr14	122632810	122633810	+	966.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	98982.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	5.28308939377396	5.29402706615758	5.40618915397537	5.5486202975884	5.37544074173429	5.49796814769073	0.289533606405587	0.387235595082194	0.767497960926093
Merged-chr1-171409836-2	chr1	171409336	171410336	+	708.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001005508, exon 12 of 12)	3' UTR (NM_001005508, exon 12 of 12)	-1477.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	6.0267415556589	6.22597708135384	5.80185021501782	5.97038083352925	6.23402060486219	6.23396453420803	0.188738638823482	0.540307901266557	0.85632302227606
Merged-chr5-117417163-4	chr5	117416671	117417671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	MTC|LTR|ERVL-MaLR	3169.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	7.46631349983611	7.12747239424481	7.03472891781571	7.6197427641336	7.55857647581558	7.36643118783589	0.431537911546498	0.0900473771837416	0.398938091847133
Merged-chr6-83914389-4	chr6	83913892	83914892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008717)	promoter-TSS (NM_008717)	39.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	7.7268136090046	8.22158549935091	7.85402125059005	7.75411268879005	7.73413689964187	7.38195058331601	-0.451737967093161	0.0821980323678101	0.379123019025808
Merged-chr15-95850744-4	chr15	95850229	95851229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	L1MB3|LINE|L1	-20657.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.06655899104537	7.11059509804864	6.9050229278266	7.43223334887933	7.46712650787873	6.77327838574494	0.358875333334416	0.212880754898058	0.605482203163822
Merged-chr8-75076473-4	chr8	75075930	75076930	+	860.7583619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17188.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.82503100521038	5.18799839619784	4.76178642945344	5.01015640650599	4.99290212370716	5.25135118485819	0.28331575753379	0.476716392215618	0.822788167672208
Merged-chr2-116945124-1	chr2	116944624	116945624	+	542.0	f1_balb.idr	Intergenic	Intergenic	44972.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	4.2844142599069	4.13862942857219	4.27702108356685	3.87789935566311	3.56895663360116	4.17109659896044	-1.03893940948754	0.0536376431769126	0.296944844541886
Merged-chr3-108050221-2	chr3	108049708	108050708	+	589.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5349.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	5.04932063656291	4.76019662534638	4.91256447660752	4.99161225230724	5.0340787841713	4.82576718909857	0.105068983151963	0.786236772523448	0.948394331310521
Merged-chr19-12433932-3	chr19	12433467	12434467	+	849.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	6062.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	7.06789999118988	7.12920146740086	6.93321238339915	6.69918299872732	6.76759640783141	6.78534677073004	-0.46342935621506	0.0590964840759979	0.314707215807721
Merged-chr14-121379945-3	chr14	121379413	121380413	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-683.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.67387635393164	6.72023871446666	7.19328897168867	6.85645213256139	6.79800795682204	7.02413297636281	0.0274492323218108	0.921939123372488	0.982542868764899
Merged-chr2-32570437-2	chr2	32569937	32570937	+	569.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	-421.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	5.16900858475223	5.03329247302725	5.06772833582576	5.288433650752	5.18983066134807	5.06169390530381	0.197739176470603	0.582546863760233	0.87378634860748
Merged-chr11-70597562-3	chr11	70597068	70598068	+	678.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-18326.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	4.10494041399431	3.90331232877385	3.7193732971064	3.90239934909948	3.70952910089215	3.89642438312693	-0.287493754277666	0.589150621321322	0.876753289776615
Merged-chr15-41778868-1	chr15	41778368	41779368	+	665.0	f0_balb.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-10127.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.20818993216318	2.80109718295154	2.89792001963641	3.11765880598544	3.14082310812622	3.15538226390158	0.676965216575618	0.335718573705158	0.725853477481065
Merged-chr6-15758035-2	chr6	15757535	15758535	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	L1_Mus3|LINE|L1	37374.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	6.33341377311699	6.37235478730533	6.20223675562869	6.2490800101161	6.29347643088073	6.26252631076002	-0.0680130073436354	0.803305366209166	0.953447441859101
Merged-chr7-17027021-4	chr7	17026523	17027523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	L2b|LINE|L2	891.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	7.14308848482245	7.19570045052861	7.13496465298619	7.66214428591293	7.87520823093137	7.26793788787247	0.70321787578252	0.00689067926639032	0.0772305550104803
Merged-chr13-91224662-4	chr13	91224189	91225189	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	-702.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	7.49195474126758	7.90270023773637	7.00087486980158	7.51957694337465	7.97320893960494	6.93530220421989	0.0406777718874052	0.942844767630158	0.987202156853573
Merged-chr19-16047175-4	chr19	16046649	16047649	+	906.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62074.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	5.11311553168785	5.29852651380321	5.55872245500753	5.8007921701922	5.58091588943186	5.823179806075	0.777189000898633	0.0243663029342255	0.183880948172595
Merged-chr7-122329786-4	chr7	122329289	122330289	+	946.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40664.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.53961153755635	5.42912392967956	4.94912546602055	5.02431186912129	4.92344928452268	4.85570812085641	-0.83803322395672	0.032273640937378	0.218291750537908
Merged-chr10-44634283-2	chr10	44633783	44634783	+	554.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175535.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.33175000539487	6.09498815647572	6.54989725618639	5.93194228711646	6.01409861943558	6.39005764419246	-0.357147337624034	0.256631723123865	0.653682511929703
Merged-chr16-5203413-4	chr16	5202903	5203903	+	915.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013796, exon 2 of 10)	exon (NM_013796, exon 2 of 10)	609.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	7.08861140213618	7.71021162032138	7.56163539878605	7.22186928482865	7.36667932188307	7.42137498456652	-0.20996583852085	0.438306524728161	0.800485853918719
Merged-chr14-34675156-2	chr14	34674656	34675656	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004436, intron 1 of 18)	intron (NM_001004436, intron 1 of 18)	1228.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	5.69131317306885	5.93723366372507	5.71503940857752	5.83627313888389	6.18487174639176	5.69476998104346	0.259568032683506	0.431720493559358	0.797036548625926
Merged-chr1-21070242-4	chr1	21069746	21070746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8979.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	5.90135000366637	6.09789131262296	5.67447289631034	5.23939484248715	5.33570008276589	5.35059170349386	-1.1283896257	0.000721684973415185	0.0139911377604685
Merged-chr2-167823593-4	chr2	167823065	167824065	+	795.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-108762.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	3.0758522738885	2.96844299937218	2.84074888892217	3.16346816605615	3.22691464597394	3.10506168280084	0.888626429343149	0.191346638524665	0.577915466365166
Merged-chr4-155847812-2	chr4	155847312	155848312	+	995.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_010091, exon 1 of 15)	exon (NM_010091, exon 1 of 15)	410.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	5.59773996208623	5.1212892001864	5.28715886887389	5.65463204104062	5.22659539688666	5.21807826719443	0.0597577332148908	0.875716502448011	0.971117457237427
Merged-chr18-82784801-4	chr18	82784245	82785245	+	799.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25706.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	5.56075412707098	5.55331471823385	5.17394377337305	6.1120382229693	6.24607211015406	5.83401043806233	1.12941278000586	0.000900216513339897	0.0166050134431359
Merged-chr11-117145010-2	chr11	117144510	117145510	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	29838.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	4.34775566088186	4.3775959608484	4.46046826689274	4.42510041270131	4.28680183950084	4.44339076244321	-0.0291327302867333	0.946987687823688	0.988007649185823
Merged-chr6-120091106-4	chr6	120090594	120091594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2286.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.72911992124125	6.00072454973213	5.27237246951816	5.66280192743856	5.80441879002708	5.37326888666296	-0.145857537074346	0.698248840481417	0.92027766015836
Merged-chr15-76805076-3	chr15	76804523	76805523	+	785.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	B4|SINE|B4	13147.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	4.05736523603354	3.89562544021901	3.98718678233738	3.60881724364754	3.72274909498178	3.70305215197177	-0.970521609246514	0.065983775183859	0.335249310954298
Merged-chr15-27647936-3	chr15	27647442	27648442	+	929.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-17249.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	3.43432641704933	3.37669770910438	3.4486111930437	3.54275924774481	3.55282987553398	3.72809159546831	0.683857076527518	0.231258677329179	0.627100516604393
Merged-chr8-46835770-4	chr8	46835256	46836256	+	839.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	96011.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.61996743337395	4.62513387513615	5.18570215627238	4.69036348412231	4.83727504082296	5.09744036921124	0.122286082171541	0.779643989136842	0.945858003792295
Merged-chr4-59547649-3	chr4	59547188	59548188	+	819.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	1676.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	6.48931224751723	6.8178378326049	6.69582440376649	6.66590864697235	7.08702204511494	6.90450716381074	0.35378396851381	0.200914514347185	0.590247860859073
Merged-chr6-31320491-2	chr6	31319991	31320991	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	78282.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	2.80363701026307	2.93510219938908	2.93696814477857	3.09231299720151	2.65433405850787	2.82484893634017	-0.112666435256738	0.878698050835952	0.972000507462599
Merged-chr4-129840254-1	chr4	129839754	129840754	+	939.0	f0_balb.idr	intron (NM_008974, intron 2 of 5)	intron (NM_008974, intron 2 of 5)	19546.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.63701797707394	4.43728832361387	4.46474761158715	4.66606082834019	4.45927233951642	4.48890396961548	0.0538436019112098	0.899965612346576	0.976728292075907
Merged-chr10-121740305-4	chr10	121739755	121740755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359720, intron 1 of 2)	intron (NM_001359720, intron 1 of 2)	325.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	7.55956825666367	7.5809934090446	7.21847450711793	7.4130844453383	7.45801943273489	6.9779866242624	-0.234976654692418	0.378474093802595	0.7608986275521
Merged-chr4-106316655-4	chr4	106316148	106317148	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183225, exon 1 of 68)	exon (NM_183225, exon 1 of 68)	435.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	7.22158183789451	7.09528662095583	6.92183378228894	6.90984533004433	6.42512181747908	6.4066381706563	-0.749612282472685	0.00880643239950836	0.0921717769934958
Merged-chr3-135441789-2	chr3	135441289	135442289	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	2663.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	4.17450588608317	4.13825558958148	3.93120358721473	4.56875612512371	4.37355560962305	4.30445800338528	0.886264333443262	0.0616118572843852	0.322094319043676
Merged-chr13-3771659-4	chr13	3771157	3772157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32661.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	3.95585374562926	3.87464572733861	3.77626826298338	3.35600196256421	3.55070396819887	3.8947555947372	-0.872441220636198	0.133347597479882	0.488442392114254
Merged-chr14-67188506-4	chr14	67188014	67189014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44778.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	6.10585328659881	6.42119497764559	6.4494381828757	5.97717365068774	6.35706341133925	5.95011485719853	-0.349356890944839	0.263385043348984	0.661383847170923
Merged-chr13-24791504-4	chr13	24791011	24792011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-10146.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	6.4979273751052	6.44378460488284	6.67599768949312	6.66838706599664	6.69137291230133	6.89435212211924	0.340747612538364	0.195665112418949	0.583398526325149
Merged-chr10-117776107-4	chr10	117775608	117776608	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134010, intron 11 of 27)	MTC|LTR|ERVL-MaLR	16597.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	4.87358034131572	4.80522329003963	4.54233946051852	4.93154369743775	5.15198983004023	4.86323092592387	0.527995923501156	0.190953386732086	0.577487433640144
Merged-chr5-64619993-4	chr5	64619493	64620493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9294.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	4.0745264588805	3.905628358996	4.05590898910231	4.16704215988718	4.36630658338023	4.17271610159477	0.663637411840097	0.166371469636909	0.541630182071597
Merged-chr10-94514040-2	chr10	94513540	94514540	+	897.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172051)	promoter-TSS (NM_172051)	-817.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.3723009833545	4.7827804525979	4.49480697327117	4.60432106403913	4.35232602291332	4.43146403259444	-0.253476912964886	0.571811995944134	0.869711287709558
Merged-chr3-95754931-4	chr3	95754414	95755414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163618)	promoter-TSS (NM_001163618)	63.0	NR_151589	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	4.76646314571036	4.95166597643731	4.86487665863351	4.86779229668542	4.7175470106262	4.56743984437052	-0.307935177603432	0.443085920194824	0.80359529750813
Merged-chr2-128763732-3	chr2	128763179	128764179	+	852.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54624.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.56870300095259	4.49309126473583	4.42822523367183	4.4156717767408	4.45775868896227	4.45211985263161	-0.149925300257454	0.72529964012859	0.929616950952244
Merged-chr5-114697635-2	chr5	114697135	114698135	+	825.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-6700.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	6.42358708768322	6.46362212614821	6.44257278733157	5.07646832926659	4.87077052072451	5.51280596092706	-2.37827287477434	4.61403388717523e-12	7.93232503479498e-10
Merged-chr1-172302549-1	chr1	172302049	172303049	+	548.0	f0_balb.idr	Intergenic	Intergenic	-4485.0	NM_178405	98660.0	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	2.77657779480535	2.69690963778694	2.95984887172877	2.46076364037092	2.53006156295841	2.41177217732314	-2.01800813550571	0.0174036118760411	1
Merged-chr6-16885007-2	chr6	16884507	16885507	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	13434.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.33202440778624	5.47813251228358	5.94618417306441	5.79370128758009	5.85008502634972	5.66894577458059	0.330533259405851	0.343575526886483	0.732393104503009
Merged-chr4-149756623-4	chr4	149756163	149757163	+	782.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027460, intron 2 of 6)	B1_Mm|SINE|Alu	17604.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.96765771823882	2.97422916089819	2.94880261059768	2.91872516984637	2.9366577256909	3.02109254578648	-0.0341021638358949	0.959573885814906	0.990233913483689
Merged-chr3-122247344-3	chr3	122246830	122247830	+	926.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	1773.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.95421211983413	4.15146691330422	3.95238206981608	3.91555052951355	4.14650221170582	4.16491013763091	0.154672461453319	0.755264967910536	0.939269406300643
Merged-chr1-37317312-4	chr1	37316821	37317821	+	810.270813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	17483.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.22726078460316	4.47173894827848	4.36568549264063	4.54971040080404	4.24372479538189	4.38937934765958	0.0954489823050987	0.83353744830484	0.96108264611081
Merged-chr11-20735166-2	chr11	20734666	20735666	+	698.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_181411, intron 1 of 8)	RSINE1|SINE|B4	6390.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.59783254718008	4.97987159816125	5.21118013809693	4.68898903058922	4.6705936319678	4.88799753908352	-0.444874134780263	0.295353681014264	0.692233149289309
Merged-chr11-70562908-4	chr11	70562423	70563423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	42.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	6.96542593856979	6.78619133332076	6.61189723684204	6.73858626605937	6.64337544602975	6.63687022890414	-0.203468478843858	0.43719851245446	0.79982441405164
Merged-chr14-31127347-2	chr14	31126847	31127847	+	945.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	1583.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	2.58179734785683	2.35005688384873	2.56646430227238	2.49012182853851	2.24891384122598	2.38292668016341	-0.796492474287438	0.34432068444807	1
Merged-chr2-25428577-4	chr2	25428066	25429066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007379)	promoter-TSS (NM_007379)	-108.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	4.27710606614845	3.82764080558227	3.64793090130628	4.01939443934635	3.58246967770605	3.77803593576721	-0.452174724003422	0.44146764531465	0.802629232779521
Merged-chr5-105020960-2	chr5	105020460	105021460	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029509, intron 5 of 9)	L1_Mus2|LINE|L1	32601.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	3.49545983938332	3.18929074089693	3.33692483161509	3.23250579949888	3.34921070928215	3.61884846242316	0.218570276752555	0.727440836252834	0.93019773943732
Merged-chr2-28591669-4	chr2	28591175	28592175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-8396.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	4.45069272035098	4.38978717384493	4.099426058639	4.00697730555174	4.2618152536103	3.90567343251959	-0.687772520458853	0.172653721960266	0.551230561617291
Merged-chr10-80071836-2	chr10	80071336	80072336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359635, intron 5 of 31)	intron (NM_001359635, intron 5 of 31)	3603.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	6.66396964969342	6.39273106219583	6.62011362639987	6.52682627238991	6.7331737718407	6.33171616866196	-0.0138146623906006	0.960963836073894	0.990386809359123
Merged-chr9-65549323-3	chr9	65548821	65549821	+	864.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30766.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	5.93381970787529	5.71395909194218	5.94536520279469	5.41295040727404	5.41327253455553	5.64020379882957	-0.703093722317532	0.0293247384190032	0.20587688443878
Merged-chr9-107554579-4	chr9	107554081	107555081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-2.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	8.32883317780777	8.26573713403363	8.15268099915653	8.09347559476097	8.3436159382994	8.21506420118391	-0.0419074126960342	0.844492094564866	0.96373428957366
Merged-chr12-24573439-2	chr12	24572939	24573939	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161406, intron 1 of 15)	intron (NM_001161406, intron 1 of 15)	1152.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	3.22931126660946	2.94873247506989	3.0749163625088	2.93438061015974	2.80580468256039	3.25874048038004	-0.374343558021345	0.59791487396786	0.880491661353492
Merged-chr6-87120908-2	chr6	87120408	87121408	+	544.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	16162.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	2.55212483127015	2.80656434718748	2.9108608458461	2.61645505807319	2.56309567271928	2.41763906290779	-1.2641448805944	0.125040296913102	1
Merged-chr4-144890788-4	chr4	144890276	144891276	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2051.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.32800805866918	5.16622466632482	5.0965944252933	4.91580303525651	4.71154370577967	4.8317818800542	-0.836701478875061	0.0265438087734048	0.193639947432708
Merged-chr9-118644358-2	chr9	118643858	118644858	+	755.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	37649.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.28231029446796	4.92955443671535	5.4340234322881	5.12694104567561	4.93286318706407	5.13542042985685	-0.33319996496293	0.386698970094474	0.767154667509758
Merged-chr18-58568525-4	chr18	58568059	58569059	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	12319.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.33548861036838	5.40883328352044	5.39558867380003	4.81117352804314	4.69742832291865	5.05035722961147	-1.12740341277812	0.00235217553095371	0.0349562103196279
Merged-chr16-4863089-4	chr16	4862608	4863608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030192, exon 12 of 16)	exon (NM_030192, exon 12 of 16)	16743.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	3.6583432940035	3.44496202908412	3.49260751314444	3.45430458409601	3.32317963910894	3.61628959194766	-0.275159488054553	0.639775451846744	0.898199312621371
Merged-chr1-131200214-4	chr1	131199709	131200709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311094)	promoter-TSS (NM_001311094)	-24.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	7.75801222701045	8.14478949536977	7.95828403224747	7.51368924842732	7.82750140745273	7.75016850853284	-0.370955362914011	0.12451784478453	0.472172484565974
Merged-chr9-31163289-5	chr9	31162796	31163796	+	859.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357698, intron 9 of 17)	intron (NM_001357698, intron 9 of 17)	-31497.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	4.88482151732707	4.62151464104886	4.66632523586138	4.14196990406233	4.07903984699019	4.40439265584128	-1.36001989950652	0.00262957786078223	0.038065747153787
Merged-chr5-138264016-4	chr5	138263517	138264517	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153161)	promoter-TSS (NM_153161)	-28.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	6.78417397166348	7.26554956922712	7.26857189737198	7.15870630647811	7.38001885834903	7.23439479254833	0.211556565009118	0.42968656354413	0.795845510948914
Merged-chr2-152830679-4	chr2	152830170	152831170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	47.0	NM_001289716	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	7.86345868627685	8.06450621370722	7.38348264184388	7.59491137308509	7.95352709068637	7.40616277631333	-0.185618089429374	0.519904842068633	0.846082496556008
Merged-chr3-62496056-4	chr3	62495558	62496558	+	839.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028136, intron 5 of 24)	intron (NM_028136, intron 5 of 24)	10930.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	4.10099090848178	4.00098467285702	4.0093520887918	4.23107906778238	4.08113262737497	4.35136115200677	0.506434868268671	0.290764996887424	0.688568107958343
Merged-chr9-121313342-2	chr9	121312842	121313842	+	810.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	B4A|SINE|B4	15840.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.94720105062734	5.23239501028262	5.30162885431858	5.77229200089314	5.52462754596451	5.61184369968196	0.170886418501481	0.657064778030453	0.904749338441592
Merged-chr10-60268962-4	chr10	60268470	60269470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-8658.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	6.00221496054253	6.04462104076076	6.4098946067067	6.25120828195486	6.27223406075723	6.202756274384	0.154907715301648	0.598724168600105	0.880808927175713
Merged-chr2-23037538-2	chr2	23037038	23038038	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	2703.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	3.91340073118015	3.89045266576675	3.93540155654965	4.10192538988404	4.068160735426	4.23695719993576	0.652819772810099	0.180436707936432	0.562271649838012
Merged-chr6-136832451-2	chr6	136831951	136832951	+	863.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039558, intron 1 of 1)	intron (NM_001039558, intron 1 of 1)	2999.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	4.37228433366842	4.5730447413621	4.91685964121063	5.28365141762915	4.98889276310869	4.75567010689493	0.907585007959742	0.0377614297415456	0.240254858994841
Merged-chr17-12781413-4	chr17	12780897	12781897	+	939.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-11691.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	3.00464345426222	2.8301852220521	3.02223381455752	3.26776465148979	3.0272677486552	3.15426721648856	0.905073057884581	0.18077525130723	0.562841800215978
Merged-chr2-143035175-4	chr2	143034661	143035661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27908.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	6.25678960518351	6.33884158758729	5.99954494619542	5.84443517184065	6.34224138028369	5.98898693662633	-0.212433252556809	0.50501079867049	0.837928144581384
Merged-chr6-97486994-3	chr6	97486499	97487499	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	821.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.99079256071129	8.16794469909322	7.794310907562	8.1879243271602	8.5557289850137	8.1319042831069	0.441025804789029	0.071444265923763	0.350618370922116
Merged-chr14-73234710-4	chr14	73234215	73235215	+	958.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-3176.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	4.27572816236187	4.2742684639885	4.34424362799267	4.45171550757635	4.13347720921673	4.57461773126967	0.242536558856923	0.601219290454409	0.881892866060192
Merged-chr2-153208323-4	chr2	153207823	153208823	+	927.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 17 of 17)	MTC|LTR|ERVL-MaLR	17118.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	5.12151832699554	5.01459695297935	5.28371309969956	5.17487933419748	4.95116653072434	4.86811391162815	-0.272754233332124	0.469635228384686	0.819030003012138
Merged-chr8-105715195-4	chr8	105714703	105715703	+	857.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027469)	TTS (NM_027469)	6914.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	3.82302609537414	3.48693531779312	3.7263680102533	3.30539360249478	3.41217042849199	3.84315912796181	-0.528560737767121	0.388713854501759	0.768597082015644
Merged-chr4-134924586-4	chr4	134924124	134925124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023665, intron 2 of 4)	intron (NM_023665, intron 2 of 4)	999.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	7.50290367753239	7.74387779832012	7.38623363355762	7.54948840065751	7.756456458729	7.56760883169804	0.105497568560605	0.659638585364458	0.905580059577724
Merged-chr4-105478455-4	chr4	105477972	105478972	+	957.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	321125.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	5.56032851551302	5.72994480794469	5.59287654755592	5.45311061612822	5.70913973490263	5.2147544647435	-0.262595729984766	0.451404787865058	0.809039968738977
Merged-chr11-53794089-4	chr11	53793573	53794573	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	23600.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	7.23786355282712	7.18210882398422	7.05063830394379	7.41372367954086	7.61463109804546	7.02529189841017	0.331477536453516	0.212542870180361	0.605079620294493
Merged-chr18-84806629-3	chr18	84806110	84807110	+	688.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44728.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	4.13184656753828	4.09620905010379	4.14226909291958	4.17155665856507	4.1456887665694	4.38519298003036	0.301831022437435	0.519347911955655	0.845789072045214
Merged-chr17-55957351-3	chr17	55956849	55957849	+	775.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_015766)	TTS (NM_015766)	-1838.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	3.23554401388405	3.09687653316572	3.08105073938537	3.26908162968983	3.18241532224076	3.32792877644934	0.483826590179812	0.445285001677473	0.805077450340689
Merged-chr7-38227321-2	chr7	38226821	38227821	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024413, intron 1 of 1)	intron (NM_024413, intron 1 of 1)	673.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	3.17666711427305	3.41845698464829	2.98359863052699	3.13478244417673	3.46424524210098	3.24602023210305	0.329383309994227	0.631441958816345	0.895122791781359
Merged-chr15-11715865-2	chr15	11715365	11716365	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	189809.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	5.54081430171514	5.69534858691145	6.11545399434727	5.7451618169855	5.96599775337727	5.86998885459443	0.130523544412765	0.697621811807307	0.920014174184201
Merged-chr1-154034315-4	chr1	154033809	154034809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	134380.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.97778999322684	6.87322199308158	6.89000055557673	6.33523609560215	6.41532275135122	6.56140410366068	-0.759733039107953	0.0030780715873426	0.0429299665839094
Merged-chr2-35327500-4	chr2	35326995	35327995	+	894.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9514.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	7.0076533657886	7.22321283100972	7.06486752660185	7.17936821169688	7.3577055773913	6.83486629156072	0.0757939174183695	0.775768556151731	0.9447881648961
Merged-chr5-24814160-4	chr5	24813664	24814664	+	992.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053075, intron 2 of 7)	intron (NM_053075, intron 2 of 7)	28197.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	4.50247391816348	4.09001273573096	4.56103415563012	4.48131468449187	4.59162350183552	4.66569066236983	0.464491518864665	0.30870779153587	0.704643548588986
Merged-chr4-44020206-3	chr4	44019712	44020712	+	713.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 4 of 5)	intron (NM_001080384, intron 4 of 5)	7562.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	4.33151579147518	4.39807389579962	4.73899367645913	4.22217019632056	4.06436895336108	4.42648811192645	-0.674074864596334	0.1541027054105	0.523241150332653
Merged-chr14-93701696-3	chr14	93701194	93702194	+	967.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	188975.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.75680292557845	3.81282965231194	3.97321115283804	4.67779336651522	4.23294591922904	4.49644873940943	1.81048366013005	0.000317771623734899	0.00730216549785515
Merged-chr16-94566232-4	chr16	94565723	94566723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-3983.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.16707920723856	4.08334970846929	3.69733270139659	4.1441496836717	3.96587292538361	3.93695546181154	0.0339324585804674	0.948863083407155	0.988169196639905
Merged-chr1-85900687-3	chr1	85900190	85901190	+	874.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	6180.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	4.16683029636417	4.04304145101163	4.41051609268176	4.51295466390138	4.49484779039823	4.25637892390559	0.60480981115257	0.194044787206629	0.581296921414137
Merged-chr6-114458392-4	chr6	114457872	114458872	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-150.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	7.74453918396949	7.7159295624265	7.50366577381142	7.77987599715517	8.0884868874349	7.64040440882576	0.280118612959653	0.252046343344956	0.649617120850337
Merged-chr15-50872826-2	chr15	50872326	50873326	+	686.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	16223.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.69808800814982	4.09930238154466	4.09871356812928	3.53809714346059	3.24651284598344	3.74526487837443	-1.57013569548466	0.00995661414142968	0.100121053728559
Merged-chr3-133091824-4	chr3	133091314	133092314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027927)	promoter-TSS (NM_027927)	11.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	8.63814241216811	8.86576039763398	8.65457436100221	8.64863872899362	8.74825148782796	8.43874652311945	-0.141693851118026	0.510538116021832	0.840913896104428
Merged-chr1-74589039-2	chr1	74588539	74589539	+	561.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025784, intron 1 of 7)	intron (NM_025784, intron 1 of 7)	750.0	NM_025784	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	3.99316608424779	4.14190260573948	4.17194804458469	4.0895889028287	4.00267535182313	4.52538718244898	0.313052659057675	0.532921957062152	0.852019794470699
Merged-chr7-4867042-2	chr7	4866548	4867548	+	956.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-869.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	4.80060937918048	5.2134631138373	5.0923335570438	7.14194054725462	7.26930519235584	6.94255432328526	3.6603344818588	6.25832973293314e-27	1.48783742976543e-23
Merged-chr15-68258164-4	chr15	68257655	68258655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	701.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.64788732653155	8.77831976389714	8.48128341073164	8.62173111281997	8.76216918067498	8.37349722561563	-0.0604270588718775	0.787862749545559	0.94877064431094
Merged-chr6-122872990-4	chr6	122872470	122873470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1587.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	7.68454675508874	7.821602583443	7.37391019436751	7.59897230576539	7.92929318723562	7.48607481158193	0.0669274207379392	0.797214878373791	0.951678829711438
Merged-chr13-45267560-4	chr13	45267063	45268063	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-122179.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	7.7116163707773	7.86092302622036	7.18388376425242	7.42105357991504	7.45159947415684	7.20238838234271	-0.38298530488567	0.164203900431735	0.538467649843298
Merged-chr7-99535052-4	chr7	99534575	99535575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177231)	promoter-TSS (NM_177231)	-411.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	5.59664925344026	5.42033444447809	5.77919220531122	5.51721706637282	5.26784921298441	5.53103559665178	-0.308898946151524	0.367077533295249	0.752113401392775
Merged-chr2-180678830-4	chr2	180678349	180679349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111965, intron 5 of 12)	intron (NR_111965, intron 5 of 12)	13199.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	3.7115893356129	3.48750178255624	4.11780492029353	3.25327839302324	3.45986959999421	3.58894267176134	-1.22829274832123	0.0499520323844855	0.284528703732479
Merged-chr18-25461311-4	chr18	25460800	25461800	+	911.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033532, intron 10 of 10)	intron (NM_001033532, intron 10 of 10)	218448.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.23827908757388	3.49463268328477	3.44521665990011	3.23070761226904	3.27936454301107	3.51525691262345	-0.214457900962374	0.72749509006948	0.930204882969987
Merged-chr8-105854977-4	chr8	105854477	105855477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021513)	promoter-TSS (NM_021513)	-126.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	6.24619696578352	6.45764327483601	6.19152632236447	6.4417024571008	6.46303796062364	6.65562529944102	0.337240257531014	0.224717162818107	0.619609949365475
Merged-chr2-43867604-2	chr2	43867104	43868104	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	118780.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.58298510051508	3.57386913221647	3.33076845376377	3.27142144162277	3.12760206334401	3.28579072677675	-1.12684065421516	0.0694250188790303	0.344832910929395
Merged-chr11-48826160-3	chr11	48825651	48826651	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053166)	promoter-TSS (NM_053166)	13.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	4.77239245354027	5.11042300713959	5.64490653157336	4.11694532119671	4.01155863461789	4.3220154289979	-2.62175063505455	1.45118579623608e-07	9.91381508482855e-06
Merged-chr1-32252478-3	chr1	32251977	32252977	+	861.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133235, intron 2 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	79755.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	2.71621068152168	2.94052595736634	2.72905740939707	2.95550304503647	2.8271928151068	2.92839428584469	0.492061312542287	0.494777691825313	0.832098209532918
Merged-chr4-47294042-1	chr4	47293542	47294542	+	682.0	f0_balb.idr	intron (NM_009928, intron 28 of 39)	intron (NM_009928, intron 28 of 39)	-59180.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	3.20969189521323	3.6135014896718	3.30429779013299	3.15529186804512	3.15295162375487	3.537601657992	-0.404241111606258	0.538173531307946	0.855027269644122
Merged-chr1-161058692-4	chr1	161058188	161059188	+	855.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172644, intron 7 of 16)	intron (NM_172644, intron 7 of 16)	11972.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	3.31953681961483	3.80023582758073	3.7881747224996	3.77189110807258	3.56142638895504	3.85720461760334	0.259011914643067	0.663082240454289	0.907000494217101
Merged-chr10-75836228-4	chr10	75835716	75836716	+	888.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1335.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	7.54067937484063	7.48966869999321	7.17706163713809	7.52917271868258	7.43348661979221	6.95755298973408	-0.116558109102831	0.669901522878542	0.90979248409737
Merged-chr13-112530002-4	chr13	112529472	112530472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139299, intron 14 of 16)	intron (NM_139299, intron 14 of 16)	50690.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	5.23855791047243	5.46459480849495	5.53614717291116	5.88870605640496	5.790309498895	5.31974263070137	0.53734505569531	0.131232945036244	0.484219364576994
Merged-chr10-16652591-4	chr10	16652091	16653091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	443191.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.9238277955258	4.89777962730559	5.2851809127709	5.47899346571286	5.354097581465	5.79314122156221	1.02323333389262	0.00641297359628009	0.0733586344513711
Merged-chr1-66818929-2	chr1	66818429	66819429	+	772.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1334.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	3.17473420572284	3.19831339446358	2.98297654882655	3.23548609083411	3.10536380947769	3.23761696142308	0.27056596610528	0.677533969531455	0.913010966021872
Merged-chr7-101965760-2	chr7	101965260	101966260	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-4083.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	3.86972156951535	3.79590505230016	3.92521981276162	3.7136119823226	3.68757334644726	3.84815384388692	-0.374603307307585	0.473037806449817	0.820602170733294
Merged-chr16-91549258-3	chr16	91548756	91549756	+	768.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	IMPB_01|Satellite|Satellite	2162.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	7.37091736314441	6.99677653354572	6.86752980001166	7.81958934327755	7.98361812873617	7.38045756541807	0.961789411749171	0.000753851322620168	0.0144931748735164
Merged-chr10-17767102-3	chr10	17766603	17767603	+	960.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29116.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.08461994279617	4.3084243815422	4.51161494717337	3.36448135207485	3.45405418048135	3.37989028440532	-3.16834179650038	1.05761802595789e-06	5.68123180786986e-05
Merged-chr13-93772207-4	chr13	93771707	93772707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	528.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	7.27833264971146	7.16961094511824	7.18969251634254	6.6000802832559	6.54462088036235	6.22217675187498	-1.14014225970746	1.58435968601588e-05	0.000596305005944837
Merged-chr5-147866360-4	chr5	147865899	147866899	+	672.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 2 of 5)	ORR1A2-int|LTR|ERVL-MaLR	5771.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	3.39468827650063	3.65536503718911	3.43849997607705	3.53411176678394	3.21824461232102	3.76828387205878	0.0545758683175281	0.930408025413568	0.98452482441856
Merged-chr14-31172159-1	chr14	31171659	31172659	+	558.0	f0_balb.idr	exon (NM_022656, exon 21 of 21)	exon (NM_022656, exon 21 of 21)	-3518.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	4.02796216162393	4.0400158484561	4.17073169920689	4.26118243628075	3.92515511049773	4.09997337295056	0.0631407402995239	0.897554214043212	0.976055448838318
Merged-chr7-139377047-2	chr7	139376547	139377547	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12062.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	4.86663400673725	5.03696250907609	4.94157703792688	4.97240588021871	5.08031521559361	4.97037485763142	0.132927671276303	0.721800803835571	0.928606209603791
Merged-chr3-116598233-4	chr3	116597781	116598781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	3323.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	5.03388796364199	5.19914929734855	5.1904128320785	5.2500903774589	5.4426362979075	4.93008346387085	0.201689668073259	0.593900839807828	0.878686007801027
Merged-chr4-59464627-3	chr4	59464217	59465217	+	916.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F|SINE|Alu	-26084.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	5.84436827677597	6.10172195696038	5.69850178216106	5.89764842282629	5.50121593001528	5.81348966288939	-0.287542154322589	0.387958762592346	0.767919582968549
Merged-chr19-24281841-4	chr19	24281345	24282345	+	971.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1259.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.6575376881894	2.7247524652361	2.95977278864657	2.90162970295358	2.7035799801562	3.03169801400744	0.496931296338011	0.500385542732785	0.834978949366358
Merged-chr2-91182927-4	chr2	91182450	91183450	+	868.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	97.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	6.01135230381865	5.78533337369802	5.90693948423839	5.56076408673007	5.43740941437346	5.69624561939416	-0.630954074685935	0.0465615927800749	0.273010852797158
Merged-chr8-13501397-4	chr8	13500892	13501892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19C|LTR|ERVK	-6857.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	5.25634243875002	5.26628560061516	5.47194428261689	4.9459568433925	4.72957628640844	5.01154741977533	-0.924365118548108	0.0130885388467592	0.121389369274906
Merged-chr6-46144667-4	chr6	46144192	46145192	+	972.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004357, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	1084631.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.42043960336502	3.43191949795548	3.50372075307996	3.32309012152856	3.16176931889672	3.41345795434446	-0.608104464264599	0.314456051452669	0.708778283922248
Merged-chr9-53540224-2	chr9	53539724	53540724	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081152, intron 1 of 17)	intron (NM_001081152, intron 1 of 17)	3177.0	NM_001081152	244879.0	Mm.116713	NM_001081152	ENSMUSG00000033054	Npat	6820401K01|AI427561|BB112559	nuclear protein in the AT region	protein-coding	4.02002053578762	3.94516600351325	3.64985379378111	4.16209970469008	4.49061019794429	4.42349244121037	1.34843994806356	0.0102234428432564	0.101962391478087
Merged-chr5-115319848-4	chr5	115319347	115320347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131932, exon 2 of 2)	non-coding (NR_131932, exon 2 of 2)	-7330.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	2.73930742560348	2.57379213939532	2.54519526611981	2.60727447818598	2.52786320976662	2.80402711464266	0.120244810627219	0.876738820542904	1
Merged-chr2-93457916-4	chr2	93457406	93458406	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	3945.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	6.41796231096271	6.12530196542638	5.96377957233084	6.10007095296549	5.95718046470763	5.7369856356056	-0.418939503628957	0.185311870140941	0.569470877644115
Merged-chr11-17002634-4	chr11	17002145	17003145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	6073.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.7120743961861	7.44088788731486	7.44277477503977	7.27953167493355	7.51323873666537	7.626511096746	-0.0919217872253549	0.706843336519909	0.923161381966479
Merged-chr5-113783863-4	chr5	113783361	113784361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11049.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	4.34149351070586	4.19744428156601	4.11792929175	4.42209815106855	4.05949393795046	4.1385545467357	-0.031693608327581	0.947438640225043	0.988008807662239
Merged-chr4-89351282-4	chr4	89350756	89351756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40224.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.81358670591406	4.37939025702873	4.39883696905529	4.19344061948875	4.4324723972642	4.33098924717431	-0.573174950363658	0.218927077904154	0.613128894826908
Merged-chr17-80112825-5	chr17	80112413	80113413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14558.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	5.99105296246807	5.87648886121292	5.66949549701328	5.1840429093582	5.06223832872061	5.14257308668178	-1.41155494799246	2.83540574437452e-05	0.000980991439409209
Merged-chr11-49085037-4	chr11	49084532	49085532	+	923.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-1985.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	5.38059087586185	5.84993665317902	5.6797604611886	5.64565298851081	5.97521628312597	5.7680856240329	0.285282250776566	0.402214793401605	0.77787096574423
Merged-chr7-101382450-4	chr7	101381959	101382959	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-3067.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	8.62383241260943	8.44134227393489	8.25822850468884	8.26902321766161	8.57928487705562	8.42272537835775	-0.0301096434286853	0.894221816482721	0.975424158569389
Merged-chr1-134078402-3	chr1	134077914	134078914	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	741.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	8.33350258862781	8.62306135696448	8.2545955896198	8.0992763651236	8.41618603418089	8.417959385795	-0.136646772031111	0.558568263873449	0.864727024268474
Merged-chr11-94676704-3	chr11	94676225	94677225	+	767.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145828, intron 1 of 10)	intron (NM_145828, intron 1 of 10)	768.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	5.43180770766585	5.31727650340784	5.23278244141356	5.72375265192599	5.25811808625051	5.2639204988628	0.198884824723893	0.58500548285138	0.87477799647552
Merged-chr5-122398026-4	chr5	122397543	122398543	+	992.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	6165.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	6.18165441151962	6.06855429858065	6.0228084002258	6.15892835883293	6.18493456590853	6.15042314356885	0.117927148970578	0.675477263863119	0.912168917206654
Merged-chr16-57222235-2	chr16	57221735	57222735	+	713.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	L1MB7|LINE|L1	9231.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	4.91092281471961	5.13329613054657	4.71196684048633	5.2717669925476	5.27491684287478	5.09301376799934	0.581629150714348	0.130556583050106	0.482880035668456
Merged-chr9-88523034-4	chr9	88522518	88523518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040721)	promoter-TSS (NR_040721)	-121.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	6.38864965092562	6.52541588020612	6.47411122273046	6.33650040658347	6.66374657893523	6.46104073533654	0.0611255471833937	0.823737811386878	0.958451755471188
Merged-chr5-43102203-4	chr5	43101700	43102700	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-131263.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.68822212064993	4.23022507575658	4.46202018262346	4.89190721958887	4.2893573099214	4.57246881403495	0.319794152931354	0.504943718117212	0.837927424057615
Merged-chr8-10834312-3	chr8	10833814	10834814	+	601.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	48140.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.73081089099136	4.43608258374354	4.19574363755355	4.05036451348914	3.96286265787009	4.16848062998993	-1.16009951554438	0.0173975506664371	0.147235089081865
Merged-chr12-113140271-4	chr12	113139743	113140743	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347443)	promoter-TSS (NM_001347443)	7.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	6.06843396020255	6.0259971151013	5.63247783091581	5.52701868293861	5.92380693704448	5.5472121834786	-0.430260989414904	0.209883495618826	0.601787200098326
Merged-chr6-145632427-2	chr6	145631927	145632927	+	677.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16464.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	3.62614884095464	3.79483178988738	3.74892488229955	3.81010656802048	3.951310512789	4.10613058109669	0.735477004678584	0.162205177606631	0.535591771804088
Merged-chr11-114229965-4	chr11	114229482	114230482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	31724.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	6.05594198448558	5.95672418647987	5.50652283657882	6.55286662561477	6.81052027775392	6.21800562378164	1.14020189330712	0.000755313643062945	0.0145112301112864
Merged-chr2-51013246-4	chr2	51012725	51013725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103541.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.02571719068516	4.69320741302697	4.35532160991036	5.02984748985162	5.0430262505563	4.66419239188114	0.441476922567072	0.331239750903019	0.722608352547837
Merged-chr4-137883914-4	chr4	137883388	137884388	+	933.55835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	21651.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	3.38830022251321	3.18875499704932	3.47646077842545	3.53677788749257	3.5358929868593	3.3220389344146	0.465265793210609	0.443570800393511	0.803864598143122
Merged-chr6-125366935-2	chr6	125366435	125367435	+	896.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	13569.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	5.79069330708971	5.60067821557325	5.84019031608708	5.99915433361048	6.10034859714991	6.32313929691918	0.699851576551407	0.0224127684897595	0.174015269244743
Merged-chr4-126253892-2	chr4	126253392	126254392	+	919.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	2427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	4.94303263479668	4.77449305701061	4.79623122295885	5.05065203012394	4.93928194144206	5.46800564763669	0.680933281309519	0.0895869549380097	0.397744215403551
Merged-chr13-112757051-3	chr13	112756549	112757549	+	594.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43728.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	3.40681363957305	3.24043491294647	3.55842771049495	3.32233645627147	3.26967463376478	3.12464589910025	-0.626080925971014	0.321110535754887	0.714716602265478
Merged-chr5-140116664-2	chr5	140116164	140117164	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	B4A|SINE|B4	58254.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	7.34329030612209	7.26276692606044	6.99056272571506	7.0492287219121	7.02785228501978	6.85839167505914	-0.346378082556087	0.168283367032712	0.544781636542735
Merged-chr11-97315713-4	chr11	97315195	97316195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-21.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	7.18273197488736	7.76620893136527	7.20109567047594	6.98280979409101	7.37940355903815	6.79049922100072	-0.496907395266409	0.105408033558946	0.433339508714069
Merged-chr18-53914383-1	chr18	53913883	53914883	+	662.0	f0_balb.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	52270.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	3.22234709576721	3.55584587557813	3.64003278040767	3.22541616675726	3.13417141101405	3.0391711922705	-1.40002471519315	0.0350725324714153	0.229824797754097
Merged-chr10-30777916-4	chr10	30777431	30778431	+	912.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	25395.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.42047990734496	5.58920531005771	5.1487754684594	5.16742307566588	5.25062593063477	4.73388355278744	-0.649226892637396	0.102790192217359	0.427502614185397
Merged-chr4-139249456-4	chr4	139248957	139249957	+	761.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	55346.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.41477020898268	6.22825896020909	6.46094414029101	6.57394207293458	6.28122079484757	5.94617236336989	-0.109289273649084	0.723588913591868	0.929080851011554
Merged-chr11-32588298-1	chr11	32587798	32588798	+	1000.0	f1_balb.idr	intron (NM_009288, intron 5 of 18)	intron (NM_009288, intron 5 of 18)	-54257.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.48408798905283	2.44596474177025	2.91426228782696	2.51107439813931	2.37046514258472	2.3785499305722	-1.21422704953421	0.152695771417451	1
Merged-chr7-24904267-4	chr7	24903772	24904772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	-74.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	5.75045286735892	5.60720603801145	6.20280693674293	5.96461617637133	5.94596834151102	6.10327347258131	0.242901110144264	0.461514398581495	0.814992635038861
Merged-chr11-77802282-1	chr11	77801782	77802782	+	558.333313	f0_balb.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	984.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	6.57015946457289	6.73368872055898	6.87318298259916	6.67956124395324	6.63383368122952	6.72572776402269	-0.0751050685236095	0.772156283888705	0.943680976839558
Merged-chr16-25010357-2	chr16	25009857	25010857	+	574.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-49282.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.23893039695929	5.23787148406507	5.49741232388066	5.29800577931728	5.21829950142174	5.35937003622632	-0.0650144122318187	0.851862303324902	0.96531854415899
Merged-chr2-14631769-4	chr2	14631233	14632233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	27427.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	3.26388450280818	3.40319407909787	3.4191668180991	3.11564738786188	3.62331898340708	3.5946626315686	0.389926835744932	0.542679381348459	0.857318248006765
Merged-chr11-32541486-4	chr11	32540978	32541978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	MLT1A0|LTR|ERVL-MaLR	8212.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.97742805561262	7.31140228802712	7.29732103146459	6.82269233846893	6.92821046336135	6.78351482401913	-0.534638252084597	0.0362932959006655	0.234409110091017
Merged-chr19-5932840-2	chr19	5932340	5933340	+	868.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-8024.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	4.131588310063	3.92406067327847	4.0208878604606	4.24826329687204	4.34133472292242	3.77018584392156	0.364023425693799	0.491644240432263	0.830622340874258
Merged-chr13-34255936-2	chr13	34255436	34256436	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89246.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	6.84347322032942	6.62783315204876	6.61759337572507	6.51480019606804	6.68251269346503	6.67657075863778	-0.121890117883229	0.641896475482448	0.899212233198401
Merged-chr4-155560284-2	chr4	155559784	155560784	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2097.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	4.75221733109752	4.9694308956453	5.24098655251659	5.08162496295687	5.17170238243309	5.36242217683077	0.448668442344108	0.245579460751367	0.642645689440908
Merged-chr6-115808631-4	chr6	115808129	115809129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028546)	promoter-TSS (NR_028546)	114.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	7.69136848437891	7.95718310659184	7.32318608616774	7.69462808548567	7.76697280040741	7.17852967385493	-0.159383391642925	0.583324800575133	0.87400013033251
Merged-chr4-137724327-4	chr4	137723803	137724803	+	973.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138592)	promoter-TSS (NR_138592)	-158.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	5.61666088643087	5.83853668345227	5.79747302476808	6.10433676535605	6.02666668462825	6.04886754271089	0.540414799659885	0.0710341140916691	0.349641876680191
Merged-chr2-30603982-2	chr2	30603482	30604482	+	966.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	8938.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	2.87116166511536	2.55071231555413	2.6565418817564	2.74207814196112	2.50957640329738	2.79315890065229	-0.0960748943297298	0.902051530221993	1
Merged-chr5-31221674-2	chr5	31221174	31222174	+	933.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1129.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	5.06002437959681	5.01783326480331	5.51628497167029	5.03931413532108	5.15437831015967	5.38868008571054	-0.0181692986547081	0.962573428748366	0.990904376638262
Merged-chr1-84283743-2	chr1	84283243	84284243	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	902.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.06242161500822	4.3498609447413	4.54315752858883	4.32162383749566	4.02547038558689	4.04156411295851	-0.516389368958321	0.298104511515808	0.694906294837019
Merged-chr5-130283217-4	chr5	130282709	130283709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153350, exon 9 of 16)	non-coding (NR_153350, exon 9 of 16)	26172.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	4.90958189883161	4.92579251711605	4.98096877887254	4.95786283384375	4.64148828945419	4.78827833785566	-0.31123687647082	0.426830096335601	0.793904265858508
Merged-chr1-95323201-4	chr1	95322693	95323693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	9565.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	6.80686395512697	7.00265538248434	6.30239298654464	6.60845600238014	6.68290461482994	6.32037967159932	-0.30703598832895	0.323236750537346	0.716612052081198
Merged-chr3-5576307-4	chr3	5575803	5576803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-55.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	8.38522348402588	8.52986811340517	8.28084204962527	8.45521019510733	8.35756204142033	8.40821817608954	0.000340133816821262	0.99869166302185	0.999767255399497
Merged-chr5-96909449-4	chr5	96908964	96909964	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-11808.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.78547665882896	5.79867280340149	5.96483556189474	5.74598092553954	5.72837632744757	6.3919397176493	0.234422437077321	0.50007307507159	0.834921806675451
Merged-chr8-46871272-1	chr8	46870772	46871772	+	551.0	f0_balb.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-115615.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.43408473323592	4.24698498661132	4.59975270301721	4.15396965337029	4.20095551020336	4.55092353810346	-0.322862882472055	0.491919343831528	0.830829065918357
Merged-chr4-41310769-4	chr4	41310281	41311281	+	921.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026893, intron 2 of 8)	RSINE1|SINE|B4	4120.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	6.73038499851187	6.54170414716647	6.78822053633007	6.11416531853969	6.73148430803675	6.63169379427965	-0.259081357485472	0.391926446742251	0.770782330002482
Merged-chr4-148657867-4	chr4	148657344	148658344	+	790.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	14527.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.04482899312202	3.81056196581803	3.97784219674001	4.5461053686088	4.5205781672263	4.54910735865736	1.63392549416495	0.000547709932281795	0.011283448389528
Merged-chr3-95693199-1	chr3	95692699	95693699	+	1000.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-5282.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	2.90129500166044	2.79190791067231	3.15695556701971	3.19640775252334	2.91654446460579	3.05721860045679	0.495281982460945	0.479896470130084	0.824391932626821
Merged-chr13-20494715-2	chr13	20494215	20495215	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21725.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.04662460221248	3.36754276514401	3.5398744643682	3.38668247581023	3.16571406723684	3.60928151870569	0.247697464212413	0.70800336204921	0.923606271223831
Merged-chr11-5730075-2	chr11	5729575	5730575	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077661, intron 1 of 5)	L1MC4|LINE|L1	11101.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	4.26276524988694	4.4579873310353	4.00183263681871	4.81963337394563	4.48362128988218	4.59822942335299	0.939742901105067	0.0488890284411343	0.280922097513771
Merged-chr11-83192285-3	chr11	83191760	83192760	+	920.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	930.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	4.99596636664702	4.94107834427344	4.93717694593668	5.25060967048598	5.46374605665517	5.00353051369482	0.640769114048426	0.0883002305924963	0.39441942997915
Merged-chr5-147450458-1	chr5	147449958	147450958	+	555.0	f0_balb.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	20302.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.17012943287416	4.16544040724277	4.3456578686018	4.01883179137153	3.77931657084524	4.1072408839736	-0.754583097655856	0.127912306140417	0.478287294716748
Merged-chr6-129238432-4	chr6	129237945	129238945	+	842.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	37.0	NR_040266	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	6.72209319681833	6.88498600813499	6.27312290425862	6.66201924991145	6.75306065847728	6.31241228855524	-0.102381922630064	0.739743490609808	0.934245371298156
Merged-chr9-13584694-3	chr9	13584174	13585174	+	940.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.08817810698791	4.99005983887102	4.90418057664769	4.65882426748973	4.24711725965876	4.53184577562037	-1.21625029099155	0.00396247934037578	0.0515574637926486
Merged-chr9-90274698-4	chr9	90274183	90275183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3914.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.79210204948368	7.70845761541623	7.8304336048435	8.1270830226546	7.98433161916239	7.98790702154827	0.371300431632565	0.0815782062937295	0.377796165557895
Merged-chr11-106957572-4	chr11	106957062	106958062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36847.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	4.64339392820087	4.72826321005594	5.0612205171265	4.47950429999419	4.18845300163089	4.68241984224381	-0.871752445836813	0.0543466797921981	0.299381422526807
Merged-chr4-40703156-4	chr4	40702652	40703652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025545)	promoter-TSS (NM_025545)	42.0	NM_001025444	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	8.49200087474046	8.58583878266582	8.42167852837358	8.52352271479179	8.72965197728865	8.37135466623146	0.0722078175453376	0.738661386919655	0.93406400924634
Merged-chr5-139337217-2	chr5	139336717	139337717	+	633.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_197980)	TTS (NM_197980)	7949.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	4.06825815884778	4.26018518145828	4.18914571895354	4.38077329887103	4.41511340964364	4.59631231662158	0.75933847258243	0.0950905684853216	0.411148363215922
Merged-chr5-74704148-2	chr5	74703648	74704648	+	881.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1245.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.1777954757471	3.92690621117141	3.84444060358859	3.41569643759775	3.18670622157985	3.59759265035552	-2.1701968734566	0.000411064742217258	0.00898211005000358
Merged-chr11-49248885-3	chr11	49248402	49249402	+	795.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110149, intron 1 of 1)	intron (NM_001110149, intron 1 of 1)	1425.0	NM_001110149	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	5.3243276077797	5.46164509315865	5.48705594048958	5.06324935023417	5.17555954143927	5.52179702832499	-0.33130465190711	0.355676306100786	0.742489966989298
Merged-chr13-47190158-4	chr13	47189674	47190674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3829.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.22710553003974	5.21557015123254	5.2028190477957	5.07524654651371	4.90689837967208	4.87724688873939	-0.544969895146038	0.134488980748143	0.490254933413278
Merged-chr3-51276221-4	chr3	51275729	51276729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-532.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	7.61571344641096	7.71412882743355	7.53559816642322	7.49362910993778	7.64823176347659	7.59238156689715	-0.0676870546033873	0.761690573268009	0.941273212547852
Merged-chr10-10660172-4	chr10	10659674	10660674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54229.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	4.32539162392371	4.20043242774019	4.33052714305726	4.50620583815225	4.66088945415816	4.30682118481986	0.583214606717092	0.19386120213469	0.581206417353292
Merged-chr15-83433456-1	chr15	83432956	83433956	+	571.0	f0_balb.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-606.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	4.68595280903006	4.62472738427716	4.68274077430976	4.50720715613241	4.58512999275853	4.96231528338337	0.0584705579596567	0.890019939486542	0.974360328989611
Merged-chr8-35633533-2	chr8	35633030	35634030	+	894.5	f0_balb.idr|f1_balb.idr	intron (NM_001081279, intron 1 of 2)	B4A|SINE|B4	-44510.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.51406080243255	4.44292872880943	4.59548597734887	4.81290115981663	4.40174302953088	4.45095034755436	0.132015462523332	0.763910947306985	0.941838906550437
Merged-chr2-60907838-2	chr2	60907338	60908338	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-26400.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.86491787415032	5.19640378566312	4.74485203132293	5.20508843724618	5.25800725801603	4.58769637515693	0.221578227805853	0.615832093575156	0.88811014762473
Merged-chr10-61648598-4	chr10	61648112	61649112	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026438)	promoter-TSS (NM_026438)	-9.0	NM_026438	67895.0	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	5.38261846142532	5.05429309177394	5.32599409475152	4.93581618600095	4.93684574031624	4.92240899674463	-0.686707029864608	0.0655431440787252	0.333907667452554
Merged-chr6-117908726-2	chr6	117908226	117909226	+	860.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166428, intron 1 of 3)	intron (NM_001166428, intron 1 of 3)	922.0	NM_001166429	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	5.49864961670763	5.5403827355301	5.4523548565248	5.38703759629805	5.69242396688563	5.36086264833439	0.00421429583058114	0.990084711075744	0.997703818943275
Merged-chr7-16001555-2	chr7	16001055	16002055	+	721.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-2060.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	3.85640122708176	3.54286770018594	3.86060466340222	3.68903101049643	3.62925429928253	3.73047530762033	-0.257167176596122	0.640227186449117	0.898404369829977
Merged-chr7-101450090-4	chr7	101449610	101450610	+	839.645874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243758)	promoter-TSS (NM_001243758)	-410.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.96831659212413	3.40401511611016	3.71469295570083	3.24492002442029	3.25338489657734	3.52438260645202	-1.38709758943038	0.0282460141461601	0.201103306671831
Merged-chr11-17007332-14	chr11	17006843	17007843	+	897.535706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	1375.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	7.1904481219154	7.09270564014164	6.93104613145119	7.4068673839494	7.42482239827573	7.12728004495086	0.376525973557989	0.128350816512227	0.479211071095037
Merged-chr4-146524206-2	chr4	146523706	146524706	+	830.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_045468, intron 2 of 2)	RMER17B2|LTR|ERVK	9286.0	NM_001243139	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.44684905739983	3.43436570038402	3.48005527103918	3.31055148963481	3.42201001517813	3.38581592553079	-0.296071818966013	0.613728950759068	0.887300906025089
Merged-chr2-124683576-2	chr2	124683076	124684076	+	653.3000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29995.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.35973545802576	6.47668366945982	6.48343759451206	5.94572382591328	6.05595892544207	5.95074665240317	-0.754297109448198	0.00706992145799697	0.0787515427947807
Merged-chr2-32360968-4	chr2	32360481	32361481	+	897.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-2029.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	6.26437130644366	6.58262204051356	6.01282022421759	6.08286852442351	6.13223607999178	6.18719869987623	-0.314300199285946	0.304592956655654	0.700973852740454
Merged-chr6-5256632-2	chr6	5256132	5257132	+	708.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	-399.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	3.52819574605956	3.86747505190818	3.48936518602292	3.42263764867813	3.52794028379192	3.56104620968095	-0.504413675827473	0.389860662322721	0.769390875251541
Merged-chr11-83604828-4	chr11	83604320	83605320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-11733.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	6.52535921888957	6.39368203903932	6.5892544666849	5.64512748938818	5.87006985745652	6.18298974309423	-1.00148725587897	0.00103301559901542	0.0184690936748765
Merged-chr13-54295915-4	chr13	54295467	54296467	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75382.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	3.86679382270506	3.71387874982945	3.9013043584448	4.63882853050686	4.27940232090755	4.39991243201751	1.7908005446181	0.000340361569530206	0.00773158762693677
Merged-chr2-79619213-4	chr2	79618716	79619716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16209.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	5.76355723293113	5.75126869615767	5.43611871371412	4.75003646550714	4.51708127211528	4.88717982753063	-2.00782073744767	1.24261917241787e-07	8.68143208216171e-06
Merged-chr4-116655291-4	chr4	116654794	116655794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3620.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	7.90197835353796	7.94525049394917	7.56219199477957	7.76696189262347	8.19210633593814	7.25144976143427	-0.0175314914200213	0.954157991113533	0.989495550016789
Merged-chr5-142895291-4	chr5	142894774	142895774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033312)	promoter-TSS (NM_001033312)	-36.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	6.31317746314414	6.46901306730305	6.61303069844992	6.59881709896195	7.00547350914196	6.40244312956967	0.386855784307884	0.197176441662219	0.58511894383854
Merged-chr12-71055692-4	chr12	71055191	71056191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	39724.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	3.76713327558222	3.64863626625854	3.92108303363896	3.8183737602254	3.70328786931133	3.94218337033724	0.133708732539685	0.801600283881318	0.952995299515894
Merged-chr5-142820920-2	chr5	142820420	142821420	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3533.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	5.85775603180631	5.59056280714458	6.21278419285864	6.54668650390351	6.29739452089487	6.50923979226377	0.936056599208315	0.0033444525254521	0.0456280055316967
Merged-chr10-117148529-4	chr10	117148010	117149010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-36.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	7.30513892346552	7.03741187099882	7.21194470695988	7.41339277481432	7.13727364128237	6.98527982016531	0.0105252959095941	0.967470344841937	0.992556222842093
Merged-chr7-16250937-4	chr7	16250445	16251445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	URR1B|DNA|hAT-Charlie	-6791.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	6.02221809032753	5.93572444052396	5.92897950852465	5.48202073822804	5.58764473106251	5.71909875304392	-0.669633189955038	0.0296626586847767	0.207374433191304
Merged-chr4-129808537-2	chr4	129808052	129809052	+	664.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-11927.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	4.72679551131017	4.5623655933121	5.07486117886836	5.85711457544449	5.88525994230222	6.04368724431959	2.2895283616613	4.62594406178583e-10	5.34082641238329e-08
Merged-chr8-84067864-2	chr8	84067364	84068364	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1028.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	6.00531476587074	5.69237985143073	5.8892147543804	5.90305314757122	5.8080150721977	6.04152050532891	0.0810398160437622	0.793881647907399	0.950531747588938
Merged-chr5-113899349-4	chr5	113898863	113899863	+	880.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011779, intron 1 of 10)	intron (NM_011779, intron 1 of 10)	9343.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	4.68063830853689	4.69570053253159	4.59725727312412	4.71158580503289	4.38847704708932	4.53828595116028	-0.273823833232593	0.516520899863827	0.844296391152365
Merged-chr1-92658761-3	chr1	92658255	92659255	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9914.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	4.35873743256487	3.94648175296014	4.37690618828663	3.85716139270602	3.71631922326523	4.2367446606481	-0.84886401420976	0.11509447760083	0.452824308109597
Merged-chr6-37617560-4	chr6	37617047	37618047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87374.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	4.76288616072938	4.71359742513788	4.45201582426357	4.80396995579771	4.62342491516775	4.9554236676412	0.307117301667233	0.464835414895518	0.816595063921171
Merged-chr4-63544154-2	chr4	63543654	63544654	+	825.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-611.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	5.1098157841784	5.39743765464057	5.74070201522722	5.4235715203465	5.48877551045828	5.49100041067215	0.0754579760178392	0.835933395824716	0.961873866737315
Merged-chr6-124807108-1	chr6	124806608	124807608	+	542.0	f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-1553.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	5.37507531048137	5.66823820981566	5.67799004883917	5.31183678138861	5.51799903144873	5.49590695733815	-0.249292585575156	0.462146529607495	0.815111700283474
Merged-chr5-3502279-2	chr5	3501779	3502779	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41554.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	8.62755705406628	8.90141426190017	8.33290727438715	8.42624377344402	8.97828277793458	8.32500596779938	-0.0394556960277973	0.887152225745457	0.973824354172309
Merged-chr5-143488187-4	chr5	143487673	143488673	+	908.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	23680.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	5.36794016758606	5.62388920786642	5.84580907161336	5.75098013590427	5.67696528464023	5.65669151209751	0.147599798522172	0.657225793745478	0.904798742244684
Merged-chr3-31090705-2	chr3	31090205	31091205	+	674.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4353.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	3.60923311639471	3.71312373959436	3.70899656281074	4.02268838616592	4.07542801418882	4.03261070011603	1.16957026600201	0.023282135017499	0.178580428636446
Merged-chr6-129416638-2	chr6	129416138	129417138	+	682.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 4 of 6)	RMER17C|LTR|ERVK	7776.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	3.61037895406893	3.60362412252	3.99564555615201	3.80129995200997	3.62048917353524	4.01850713839208	0.244085451921273	0.664882984939851	0.907721942545399
Merged-chr7-49252622-3	chr7	49252131	49253131	+	789.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	6442.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.60213846621088	5.16594725112931	4.90386045186789	4.30988434407764	4.30524726926532	4.45968950445377	-1.35116040703954	0.00247243841276032	0.0364156132836597
Merged-chr16-31944199-4	chr16	31943702	31944702	+	914.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 2 of 2)	intron (NM_172822, intron 2 of 2)	4319.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	3.40400079802541	3.41869381204363	3.23482358668434	3.4142816126366	3.34246315348188	3.53251554657065	0.254995831215116	0.671307911497105	0.91042706437241
Merged-chr7-80771180-2	chr7	80770680	80771680	+	657.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	32151.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	4.91619347822665	4.99879709174902	5.33630732062153	4.81041203429639	4.74059453907196	5.25570833573861	-0.309235943711088	0.453885076792907	0.809979841654596
Merged-chr15-64039032-3	chr15	64038541	64039541	+	678.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	20723.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.98300868551252	3.93195212194727	4.23614564401124	3.91904307771911	3.96279405451537	4.30244155497119	0.0424845360610652	0.933372448061842	0.985421880379249
Merged-chr5-29731804-2	chr5	29731304	29732304	+	705.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4094.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	4.65318337618626	4.4419013403674	4.15210252977963	4.21993171470467	4.62515896480676	4.36800773713571	-0.0435483402955626	0.927968396503606	0.983759092435667
Merged-chr6-39680810-4	chr6	39680302	39681302	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139294, intron 2 of 21)	Lx7|LINE|L1	44661.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	5.1214322628524	5.16212766839476	5.08167683534647	5.44090126489295	5.45390107520833	5.46630371338201	0.655282452217701	0.0546056303151416	0.300134177817371
Merged-chr2-128762746-3	chr2	128762270	128763270	+	803.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	MTD|LTR|ERVL-MaLR	-55533.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.33210598497406	4.62156618986204	4.36358135475256	4.12580971151457	4.31293947849486	4.88348255754949	0.0597448408745223	0.904963241752401	0.978186201733838
Merged-chr3-88502838-3	chr3	88502340	88503340	+	944.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001111102, exon 1 of 10)	exon (NM_001111102, exon 1 of 10)	512.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	6.98562100225324	6.74110373959378	6.4293959302962	6.24619503953122	5.65769765498091	5.61724373811915	-1.4311238416869	3.31670385705127e-05	0.00112094351964875
Merged-chr19-41829847-4	chr19	41829309	41830309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008043)	promoter-TSS (NM_008043)	-161.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	6.05380531408219	5.87500124749988	6.11454486631082	6.99395501322949	6.56025757706508	6.75619583913276	1.25359282744187	1.53255383719058e-05	0.000579113259241387
Merged-chr2-34771959-4	chr2	34771525	34772525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-65.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	8.46637662865831	8.29644390745563	8.09456590055336	8.21518154528712	8.60939257703869	8.19903761438733	0.0879585276978679	0.716412526144303	0.926569584146506
Merged-chr18-53921624-4	chr18	53921215	53922215	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59602.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.5692387943374	6.18431376084586	6.18663628497271	6.78268640930994	6.89692342328959	6.39542736081018	0.619117063458147	0.0408450905872792	0.252004450806929
Merged-chr11-106202180-2	chr11	106201680	106202680	+	807.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026009, intron 11 of 12)	intron (NM_026009, intron 11 of 12)	-8577.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	5.80109194011421	5.86332592141357	6.01626896609206	5.95104423228858	6.02389522589255	6.14079861576997	0.257471918821367	0.384782534591834	0.765926259647846
Merged-chr12-38780287-4	chr12	38779780	38780780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007960, exon 1 of 13)	5' UTR (NM_007960, exon 1 of 13)	198.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	8.06714870087475	8.42725916402932	7.9517919385038	8.09932274783473	8.58706901582656	8.30622573492284	0.252128432019615	0.325375061331499	0.718124347934101
Merged-chr6-106794252-4	chr6	106793744	106794744	+	946.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175357, exon 4 of 11)	exon (NM_175357, exon 4 of 11)	5843.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	7.83206903503021	7.96407556549509	7.45693110962046	7.94818997258912	8.26040081074929	7.70676815322178	0.31898111074532	0.23542043799343	0.631597709612866
Merged-chr19-4151535-2	chr19	4151035	4152035	+	547.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011778, intron 7 of 10)	intron (NM_011778, intron 7 of 10)	2872.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	3.89853522355573	3.84904047907239	4.80038511363044	3.84409279475654	3.57823348352672	4.09782237150809	-1.13803148742683	0.0650032120247244	0.332512189838145
Merged-chr1-173961649-4	chr1	173961198	173962198	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011940)	TTS (NM_011940)	-19026.0	NM_001302650	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	7.46614047159404	7.51432245408059	6.59443049176346	5.57511823444088	5.37146008967902	5.29153310757187	-3.08311127294719	1.81166825130453e-17	7.91939335921653e-15
Merged-chr8-70806079-2	chr8	70805628	70806628	+	891.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2321.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	5.33601655913846	5.38806075496921	5.66668383191986	5.52965332553789	5.60486760026297	5.98222326216074	0.466825153576732	0.178901629127718	0.560236602177532
Merged-chr10-99269380-2	chr10	99268880	99269880	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6149.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	5.67266472160898	5.34739114241478	5.79171803086631	5.57311446275428	5.56521175421875	5.87603821187883	0.114934520893794	0.73768285373014	0.933858424870961
Merged-chr13-94050245-4	chr13	94049731	94050731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7565.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.98930777209654	2.99928531546031	3.06514615370482	2.97269266454403	2.96351843378182	3.19306683925276	0.114033344795404	0.864063618709075	0.968269312109804
Merged-chr7-139683905-3	chr7	139683422	139684422	+	847.333374	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-107.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	2.24654234794905	2.27067072708116	2.4109951074107	2.01857492753245	1.93338029662523	2.23134382091784	-1.99507772048883	0.045337881143461	1
Merged-chr2-50842087-4	chr2	50841560	50842560	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67624.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.93199655731646	3.06556206635631	2.78349354906001	3.00818676502611	2.71733142970674	2.98313857045148	-0.146632846888696	0.840146952751105	0.962819298477451
Merged-chr7-111081249-2	chr7	111080749	111081749	+	887.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013507, intron 2 of 21)	intron (NM_013507, intron 2 of 21)	1781.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	4.05551403116698	3.72270718936592	4.07579399350774	3.85112375363248	4.05573919463715	3.95442836406118	0.0105154677690591	0.983881772859935	0.996443902142547
Merged-chr1-43467128-4	chr1	43466624	43467624	+	843.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	21373.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.53316653361649	4.45534283364775	4.32947155406249	4.23020819145413	4.2632199167121	4.11047624731048	-0.631177906348422	0.165075425069731	0.539772702841285
Merged-chr3-20538712-4	chr3	20538188	20539188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-171511.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	4.72926032015837	4.76378772506925	4.76404130994026	4.58808088438508	4.45089955571345	4.10902631612352	-0.835806527121284	0.0628297996631275	0.325992515456102
Merged-chr16-70330855-4	chr16	70330356	70331356	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	16907.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.75537390830286	3.84433313667145	3.89783853583696	4.60316715341146	4.80546843832088	4.37113391893617	2.21197118565288	7.54365169439033e-06	0.000314317561435569
Merged-chr18-80483200-2	chr18	80482700	80483700	+	725.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-13533.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	4.68919054622115	4.98063381884338	4.83956845321064	4.66578444446875	4.59439822972785	4.71455561572728	-0.438320866856969	0.277793485054517	0.675037681923261
Merged-chr2-53191327-4	chr2	53190832	53191832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-145.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	8.07144445381379	8.25424301452413	8.0929614914156	8.13277456041017	8.17008170295628	8.03417767432606	-0.0393148202755891	0.852322679672965	0.965371685862846
Merged-chr2-129199546-2	chr2	129199046	129200046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159593, exon 2 of 6)	5' UTR (NM_001159593, exon 2 of 6)	773.0	NM_001159593	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	6.14023927216606	6.17299250723798	6.03302508077672	6.03874658938009	5.94598046080182	5.68462494486711	-0.368462312419329	0.221130162817712	0.615632797217854
Merged-chr18-49979329-4	chr18	49978820	49979820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-107.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.49276267776731	5.40964575743167	5.64325578984632	5.03968392101832	5.1299433982954	5.34737092635103	-0.678873610823911	0.0526136080799119	0.293462468233899
Merged-chr2-25707104-2	chr2	25706604	25707604	+	837.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_023326, exon 1 of 1)	exon (NM_023326, exon 1 of 1)	225.0	NM_023326	107771.0	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	2.94400499358577	3.1163936650797	3.19271305002198	3.32413058088121	2.68057249758396	3.42630693426533	0.416675941334004	0.591656129056437	0.877718735408096
Merged-chr18-30513333-4	chr18	30512815	30513815	+	963.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	240450.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.68365615052007	4.55183227475108	4.6447069531779	5.07698326626652	5.32695419506778	5.02231624741365	1.17914197297762	0.0025446067666324	0.0372111845057907
Merged-chr11-60935477-4	chr11	60934978	60935978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	3421.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	7.96887955579758	8.06182037283927	7.67901781940548	7.54400814323291	7.79554522772691	7.63238292671973	-0.365590654988322	0.123607900902756	0.470544707581506
Merged-chr12-71807500-4	chr12	71807018	71808018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-23550.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.48845529952776	5.82754478998635	5.39465275008078	5.32665018337575	5.40706539849694	5.51801538682172	-0.340737684891636	0.32574629328077	0.718251132260576
Merged-chr10-81644911-2	chr10	81644411	81645411	+	661.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027480, intron 17 of 19)	intron (NM_027480, intron 17 of 19)	-4158.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	3.09731414314494	2.85154279791689	2.96444764014144	2.72363204327844	2.52590717081955	2.85750573189725	-1.44877358666652	0.0602654943612423	0.317793643593879
Merged-chr8-46842802-4	chr8	46842290	46843290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103045.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	7.3314024707956	6.97388249278261	7.02651781156547	6.8992084080003	7.0123312444889	7.22074091982543	-0.118558931974758	0.650170825565134	0.902544402889903
Merged-chr11-77802767-4	chr11	77802268	77803268	+	982.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	1470.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	6.2440926450774	6.30944872216448	6.32242106172429	6.20650950242731	6.09702854003534	6.28531782312894	-0.166373531621778	0.5473415621111	0.859266262227511
Merged-chr7-102066611-2	chr7	102066111	102067111	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_104582, intron 1 of 21)	B3|SINE|B2	1120.0	NM_001286689	102443350.0	Mm.292904	NM_001286689	ENSMUSG00000099481	Xndc1	Xndr	Xrcc1 N-terminal domain containing 1	protein-coding	3.05950123631006	3.57797156904837	3.27136715948834	3.35374270135137	3.29847499299195	3.61349648002518	0.374821368386977	0.570141847904467	0.869072933274727
Merged-chr6-100670600-4	chr6	100670097	100671097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181590, intron 1 of 10)	CpG	560.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	7.17252146693134	7.39672412810518	6.94404912842622	6.97354799534412	6.88213461709732	6.85464462057241	-0.437778394598063	0.0898538993045161	0.398367649232111
Merged-chr12-65173834-2	chr12	65173335	65174335	+	951.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1255.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	3.80400098966303	3.8502103251548	3.81396880412833	3.70756246139895	3.75939676851685	4.2024367843665	0.235331161477605	0.663973593914212	0.907458933714624
Merged-chr5-136088825-2	chr5	136088325	136089325	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4909.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	4.26343626832865	4.068780830237	4.23935133701385	4.32463450404717	4.29616308497674	4.74231313113419	0.707781500368615	0.13494563554244	0.490990947514131
Merged-chr6-143175395-3	chr6	143174868	143175868	+	671.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029250, intron 1 of 7)	PB1D11|SINE|Alu	8138.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	2.59982833672028	2.40156210055584	2.39465373204123	2.46269181035503	2.29922601905348	2.59778747807906	-0.100820477093006	0.903197480253656	1
Merged-chr19-21942486-3	chr19	21941994	21942994	+	688.444458	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	164154.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.24916950723496	4.71232306430639	4.48770805891668	4.7778020772325	4.72541050635834	4.83307349424957	0.65335899003671	0.133184920256011	0.488240127919411
Merged-chr11-59534537-4	chr11	59534052	59535052	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	-7017.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	4.78034931351671	4.85701818245123	5.21501792320738	4.8299218948391	4.90120138557424	5.39041964832512	0.212801909924694	0.611718429789544	0.886294046768734
Merged-chr11-87433853-2	chr11	87433353	87434353	+	591.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_031386, exon 2 of 31)	exon (NM_031386, exon 2 of 31)	6262.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.4263499757417	5.6797519207336	6.09474023393938	6.00639317704872	5.91160160302585	6.0507583851175	0.422958706749164	0.212373292912447	0.604853065009053
Merged-chr7-25269192-1	chr7	25268692	25269692	+	618.0	f0_balb.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	1493.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	8.07634652522295	8.06185712376789	7.66944752782314	8.22024270373668	8.34407617523572	8.02293942987287	0.353501954957914	0.140759002255049	0.501285627912947
Merged-chr6-24708290-1	chr6	24707790	24708790	+	573.0	f0_balb.idr	Intergenic	Intergenic	-24955.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	5.4825790820702	5.73022157281902	5.56757092913638	4.66541095253465	4.6862372295506	4.72854275445081	-1.91227145423038	2.97763349373875e-07	1.86428087093314e-05
Merged-chr2-167763523-2	chr2	167763023	167764023	+	901.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72346.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.87383910277476	4.98688438228487	5.0997486278634	4.98520485305172	5.00464822021729	4.80292528797468	-0.0921944231921775	0.808500158595884	0.954683711776353
Merged-chr11-120988561-4	chr11	120988067	120989067	+	909.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	2766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	4.38708070870959	4.44410519838238	4.57793884166626	4.56310121671249	4.93869987866308	4.51856746150415	0.568005209394549	0.194060439382721	0.581296921414137
Merged-chr1-170173152-2	chr1	170172652	170173652	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133806, intron 1 of 10)	B1_Mus2|SINE|Alu	1812.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	2.92638627482026	3.104916389362	2.88120976875187	3.13857892694751	3.05864062470408	3.07890261295002	0.510183648332235	0.450819744295777	0.808622732738337
Merged-chr5-53589322-5	chr5	53588764	53589764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080928, intron 1 of 10)	CpG	-1082.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	7.51935163755643	7.50658944934781	7.33238113528453	7.46991465841755	6.97335210750968	7.20238660574432	-0.341023947593207	0.185193634073965	0.569354956734767
Merged-chr2-73456630-2	chr2	73456130	73457130	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	L2b|LINE|L2	-2741.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.75322710435365	5.74846782839323	5.71887575780339	5.77509009021926	5.96404969731374	6.14905442572983	0.398406569736296	0.197263598427091	0.585249572057385
Merged-chr6-87731441-2	chr6	87730941	87731941	+	637.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159697, exon 1 of 8)	exon (NM_001159697, exon 1 of 8)	572.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	4.62252983771419	4.44543135116583	4.42806284406589	4.02268535169091	3.74758590692583	4.03515118465492	-1.62999791448011	0.000864014719429263	0.0160870299338264
Merged-chr2-124709496-4	chr2	124708940	124709940	+	735.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55859.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.81701225456785	6.89741093303476	7.10925927960565	7.31876253520987	7.1832320329634	7.03834342546121	0.378269688437261	0.131613058939806	0.485084133959222
Merged-chr10-111411750-4	chr10	111411256	111412256	+	939.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61471.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	4.22723784441497	3.88833849158141	4.35165456561978	4.2934028466375	4.17296691732841	4.41811399906628	0.356445412298961	0.466178533949324	0.817401400334113
Merged-chr8-119123075-1	chr8	119122575	119123575	+	707.0	f0_balb.idr	intron (NM_019707, intron 7 of 13)	GA-rich|Low_complexity|Low_complexity	-221463.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.01809543632157	3.03174265451053	3.30234895844123	3.08191346013628	2.88549179678247	3.37251726750096	0.0123040384465935	0.985811746423515	0.996966634617303
Merged-chr7-141476384-4	chr7	141475888	141476888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	8.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	7.49760433002515	7.19940361363184	7.6801247713878	7.70104009432528	7.43568956818038	7.42100433325048	0.0862371355695387	0.736314190479137	0.933126673998417
Merged-chr8-3499895-2	chr8	3499395	3500395	+	603.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-624.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	4.94213561319973	5.39693888092221	5.39087910919959	5.41905091949089	5.48494335439384	5.26789233777148	0.283294845350911	0.44234337098534	0.803209439640776
Merged-chr4-34882966-4	chr4	34882408	34883408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	40.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	7.80360241723167	7.42464796699261	7.34619248492355	7.73531824151104	7.28446132579246	7.03352730813262	-0.226205161672891	0.44007845488106	0.801567033070239
Merged-chr2-131423167-6	chr2	131422676	131423676	+	920.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68686.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	6.07342691688995	5.96327976054724	6.06914343165142	6.2564693559483	6.14236020315897	5.69970605228222	0.055662380667156	0.859743371728874	0.967435965660262
Merged-chr17-88066127-4	chr17	88065636	88066636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-845.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	7.68017444036745	7.38200325935608	7.63066186243798	7.81053674750704	7.51861182797139	7.44035969225232	0.049588235437081	0.840511949328618	0.962819298477451
Merged-chr14-25470840-1	chr14	25470340	25471340	+	719.0	f0_balb.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11655.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.7963058545984	7.74756352222963	7.32968254235411	7.34877761546955	7.37855107251479	7.12593527488332	-0.519004466826575	0.041765276787809	0.255623769838912
Merged-chr11-21570226-3	chr11	21569732	21570732	+	624.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	1702.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	5.55191365200254	6.09665030421567	5.81509682376955	6.27823250839502	6.54166540217823	6.0508284620275	0.801405732789404	0.0167267805396837	0.143484548808463
Merged-chr2-168955545-4	chr2	168955025	168956025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	62.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	7.30695228334961	7.61813812546383	7.1074033466807	7.12043378678593	6.96462853230653	6.8361847037433	-0.581360273546163	0.0292306978379901	0.205442005718682
Merged-chr6-29544135-3	chr6	29543643	29544643	+	917.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14861.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.94641035860177	5.02936407385436	4.76392682795569	5.04053206220331	4.89855342966259	4.94635975251331	0.0752654761171723	0.843889976089877	0.963679834808661
Merged-chr1-120123192-3	chr1	120122762	120123762	+	984.0888669999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	2075.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	5.07145924495661	5.37031085320317	4.92293016708426	4.65665021615861	4.53390530162578	4.75723781865274	-1.11845840479214	0.00561297970875924	0.0665211245700668
Merged-chr7-7300707-4	chr7	7300211	7301211	+	957.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126157, exon 1 of 3)	non-coding (NR_126157, exon 1 of 3)	140.0	NR_126157	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	3.35014335099705	3.22479684374392	3.32923545525544	4.62173745975984	3.89524565351874	3.83316483455371	3.03389655641136	4.41661031832262e-06	0.000198862181475643
Merged-chr16-56715744-4	chr16	56715259	56716259	+	876.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357126, intron 1 of 8)	intron (NM_001357126, intron 1 of 8)	1691.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	5.12144915983218	5.2898955888469	5.37442319036023	5.30740788619049	5.44424662920465	5.1830508396121	0.130220113846248	0.712086131934715	0.924891945289204
Merged-chr1-184534244-4	chr1	184533729	184534729	+	897.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	23462.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.27892730647057	5.01082118800192	4.97370841088157	4.79771979354122	5.06450669038033	5.07410738676161	-0.245023108247275	0.523935762116068	0.848428438699863
Merged-chr5-147532095-4	chr5	147531606	147532606	+	906.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 13 of 18)	intron (NM_028291, intron 13 of 18)	101950.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	4.80850210547878	4.95792651486935	5.2558685918619	4.75536467744155	4.82911278051894	5.48077954003919	0.0847239550662078	0.84705046797062	0.96415075979756
Merged-chr14-59185921-2	chr14	59185421	59186421	+	944.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7172.0	NM_001004158	380907.0	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	4.04021694336922	3.91749622126585	4.35419927747058	4.2958789697402	4.57011923458818	4.1984849613257	0.730122052886323	0.138416716490043	0.497188985235095
Merged-chr4-101698131-2	chr4	101697631	101698631	+	689.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19276.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	2.41490760493337	2.37926729354681	2.61740203185312	2.52866093276821	2.33785873251843	2.30811474819558	-0.470090215042387	0.572917014274508	1
Merged-chr8-68193440-3	chr8	68192866	68193866	+	766.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83162.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.60953026052812	5.5708944261683	5.70072956103544	5.6168134545904	5.79485777632226	5.62875784956099	0.12221529213511	0.699063784731707	0.920515737149593
Merged-chr19-40659171-3	chr19	40658664	40659664	+	865.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-606.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.83873334024589	6.33585397199125	6.07036785158426	5.44842911354792	5.83467962402191	5.85557561049277	-0.659107586602662	0.0512581190834578	0.288513129875908
Merged-chr1-173673683-3	chr1	173673172	173674172	+	665.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162938)	promoter-TSS (NM_001162938)	-8.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	5.37740152273237	5.5215785109931	5.34395890550556	4.95449659593615	4.86210665100313	5.31656862576574	-0.769752231781176	0.0376513520020134	0.239866296407896
Merged-chr7-99376994-2	chr7	99376494	99377494	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4524.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	6.93498895463105	7.13675137424349	6.76739473514346	7.03479188935603	7.44192797800691	6.9632470123339	0.321679838785041	0.246288719758659	0.643378471612549
Merged-chr19-6125375-2	chr19	6124875	6125875	+	805.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	2840.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	2.19737681158114	2.23567458816849	2.14649701885785	2.29319925949554	2.13200449351111	2.54471333483118	0.903910865198188	0.311886480455952	1
Merged-chr10-62493177-2	chr10	62492677	62493677	+	679.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011157)	TTS (NM_011157)	-6372.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	3.1756970271615	3.09340153709999	3.63055216084936	3.37542000381847	3.09152996957513	3.34311337803287	-0.163106756034353	0.807036232407139	0.954421557180913
Merged-chr11-100376116-2	chr11	100375616	100376616	+	726.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 9 of 13)	ID_B1|SINE|B4	-19975.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	3.86133468223431	3.78775075710755	4.30309359997398	3.67154896612409	3.63183267885828	3.9433123678331	-0.77079854313468	0.166869959104044	0.54240433228749
Merged-chr2-117086712-1	chr2	117086212	117087212	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-34359.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	4.06933225348194	4.1206952365822	4.23556230893855	3.59493232973658	3.8324685402761	3.78320123223448	-1.22384462106875	0.0197809610049614	0.160281838864624
Merged-chr14-118937819-4	chr14	118937319	118938319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008929)	promoter-TSS (NM_008929)	-113.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	8.06334579897844	8.42307618663993	7.85967058238911	7.98597253086775	8.03986852376912	7.92401659670323	-0.224397672987255	0.358907753121503	0.74519810754794
Merged-chr6-142748118-4	chr6	142747606	142748606	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8580.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	7.23686266937443	7.73227007548396	7.50094988555985	7.18556607661653	7.80388895490925	7.51810746899383	0.037085924344427	0.895932163808775	0.97569173539301
Merged-chr7-28813957-2	chr7	28813457	28814457	+	918.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_177301, exon 3 of 13)	exon (NM_177301, exon 3 of 13)	3067.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	3.57303969885345	3.26734963499121	3.50403191275908	3.32858315490062	3.25590698954854	3.72400845887582	-0.0337750680602839	0.957030716748007	0.989887454023164
Merged-chr11-83603641-3	chr11	83603125	83604125	+	933.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	MLT1G|LTR|ERVL-MaLR	-10538.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	5.28102108123009	5.1189072122894	5.08849696227807	4.9264384153434	4.50750994372636	4.7024235767749	-0.991335281416716	0.0130152112199739	0.121002200580066
Merged-chr17-21567832-1	chr17	21567332	21568332	+	610.0	f1_c57bl6.idr	intron (NM_001002008, intron 1 of 5)	Lx5b|LINE|L1	854.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	3.92291469280291	3.58822509185253	3.70915198988085	3.65978342814816	3.94719757362011	3.88190031909489	0.282636864435654	0.606740644317868	0.884270848132016
Merged-chr16-23492979-4	chr16	23492474	23493474	+	927.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359083, intron 4 of 10)	MIR3|SINE|MIR	27841.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	3.99494316683749	3.83132723079876	3.73587640068961	4.04385310148773	3.89936113825262	3.86092560068634	0.228251622624039	0.659162347520743	0.905239905139645
Merged-chr5-92502216-2	chr5	92501716	92502716	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	3441.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	4.23085392963078	4.10662514094014	4.24570220160237	3.97491078219014	4.22199896743095	4.39730665910714	0.0311720419166434	0.948235281810281	0.988083630162243
Merged-chr8-22859317-4	chr8	22858839	22859839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-200.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	6.70784435495665	6.92261629405108	6.73480301247983	7.04691559020297	6.6747742284005	6.92669381687084	0.142565364767596	0.592149813519812	0.877953024417892
Merged-chr17-10326762-4	chr17	10326262	10327262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	2160.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	5.53469875894766	5.79632081479891	5.67178416341761	5.39817158989545	5.57454494271221	5.59939612179326	-0.27602400296016	0.398845013753716	0.775429226349887
Merged-chr16-91648261-4	chr16	91647733	91648733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019973, intron 1 of 4)	CpG-5863	409.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	7.92440305892608	7.97826204163996	7.57492444414575	7.94100521754324	7.88096807779844	7.9070053864089	0.0899484901275512	0.697206512333496	0.919859963548202
Merged-chr17-5454418-4	chr17	5453905	5454905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14145.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	4.94996042210408	4.73494571609373	4.70738785081131	5.19004824760317	5.0043783739462	4.89463980840167	0.50701051630504	0.194938680174175	0.582652311503027
Merged-chr7-30395904-2	chr7	30395404	30396404	+	542.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17884.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	2.60388044402092	2.56213291595147	2.56564895878027	2.56376607351121	2.48601567714911	2.70085176396616	0.0205752227814736	0.978629141205149	1
Merged-chr11-11682868-4	chr11	11682406	11683406	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	4.37607465908111	4.38485556315932	4.34012097145724	4.37456387029208	4.53150001197771	4.40793765784244	0.195458627445677	0.653711097300018	0.903509675334118
Merged-chr17-36042836-4	chr17	36042318	36043318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	-76.0	NM_001359756	15039.0	Mm.195061	NM_010396	ENSMUSG00000056116	H2-T22	27b|H-2T17|H-2T22|H2-T17|T22b	histocompatibility 2, T region locus 22	protein-coding	7.47721309372047	7.4468838100547	7.26779075775078	7.61749801302633	7.76380772310333	7.27699894324837	0.253794204873889	0.312241365853923	0.707056878336701
Merged-chr11-69324781-2	chr11	69324281	69325281	+	793.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	795.0	NM_001024206	245828.0	Mm.28073	NM_001024206	ENSMUSG00000049299	Trappc1	BET5|D11Ertd172e|MUM2	trafficking protein particle complex 1	protein-coding	7.23226773067324	6.9714536804006	7.04184606316618	7.27009275130791	7.58094047321335	7.05919781763368	0.365197051960187	0.172044951337147	0.55057560520216
Merged-chr5-117485582-3	chr5	117485079	117486079	+	737.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	71577.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.79993814138415	4.78102687874968	5.06348501752135	4.37071723329952	4.6724945726097	5.03152300582689	-0.387365739675841	0.378471461311336	0.7608986275521
Merged-chr14-68582142-4	chr14	68581643	68582643	+	947.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021475)	promoter-TSS (NM_021475)	-71.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	5.13492501295202	5.06717356599918	4.80876816441117	4.81469317921416	4.96025131169385	5.28202823972758	0.0109785760340561	0.977980204108808	0.994994154947079
Merged-chr11-21081279-4	chr11	21080780	21081780	+	993.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA5|LINE|L1	-10044.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.78246597979914	5.01880982960648	5.02166067086206	5.19529629743539	5.0452864258366	4.90446273526579	0.24860866361735	0.514773306154565	0.843210843733192
Merged-chr13-99344041-4	chr13	99343511	99344511	+	834.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173757)	promoter-TSS (NM_173757)	667.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.90131015251857	6.17844544846631	5.81687327392624	5.84943359191579	6.0754080497521	5.85318102834859	-0.0796403128572402	0.799003860292946	0.952147379219007
Merged-chr6-114908170-4	chr6	114907662	114908662	+	906.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	13659.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.93412229559154	5.98146109162818	6.00935050039554	6.09779530460954	6.02468891087556	5.65965325076948	-0.0358828123699464	0.907636044594305	0.978981903953683
Merged-chr4-97772783-4	chr4	97772253	97773253	+	958.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4873.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.82079138044526	6.51817133338537	6.62785364047125	7.15213235657953	7.19258226720454	7.11009836463993	0.754163512396115	0.00281285451909842	0.0400628932447645
Merged-chr1-52630244-2	chr1	52629744	52630744	+	663.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	-461.0	NR_024590	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	4.16350485664216	4.15895497826977	3.93197875891963	4.25972083290875	4.07484931715316	3.949975739491	0.0249724886811928	0.959763693151357	0.990242512723989
Merged-chr2-132591745-3	chr2	132591238	132592238	+	949.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-6458.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	3.12296609049661	3.01407530192001	3.05179871287971	2.97257394377865	3.1222564015144	3.23709042496326	0.214197865146879	0.74491145162072	0.936032341688524
Merged-chr5-135572578-2	chr5	135572078	135573078	+	993.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_019577, exon 2 of 3)	exon (NM_019577, exon 2 of 3)	471.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	7.76088231219348	7.51764340599863	7.54276367124755	7.28252308806545	7.77012021030882	7.33396968307721	-0.177544403988216	0.495639106953682	0.832548829364543
Merged-chr5-65120089-4	chr5	65119563	65120563	+	967.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347355, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	-11168.0	NM_001359401	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	4.25526475689839	4.25410589651778	4.08142581353428	4.25366650575958	4.45012394933219	4.55048368169862	0.569097874362458	0.216246095389854	0.609708172523565
Merged-chr10-87675214-4	chr10	87674717	87675717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153422.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	4.69501370190473	4.62631671684329	4.23172241369335	4.21191150829023	4.75508611674182	4.20067859823042	-0.26851412468426	0.595384930814341	0.879485821168365
Merged-chr14-64050668-4	chr14	64050183	64051183	+	906.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34727.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	3.50534915468516	3.67408337673738	3.85087712956008	3.51925107876461	3.41949840095511	3.23087978978672	-1.03413683799151	0.0911103953601771	0.401699290355094
Merged-chr6-17612834-4	chr6	17612313	17613313	+	952.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24197.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.28651327267956	5.62033910039246	5.63572369200797	5.38656586041503	5.70008067545185	5.82164914558032	0.235009914492153	0.500418252317377	0.834978949366358
Merged-chr6-53370148-4	chr6	53369636	53370636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 2 of 10)	intron (NM_001327821, intron 2 of 10)	82833.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	5.72924899801399	5.58699833352253	5.63265149083686	5.44583158108649	5.72054786011206	5.30153904074872	-0.251268858453127	0.459668498275214	0.813819730244683
Merged-chr10-128703397-2	chr10	128702897	128703897	+	795.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183417, intron 3 of 7)	B1_Mus1|SINE|Alu	1654.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	3.8928757736152	3.88553891334364	3.83001570127487	3.68458783748815	3.97467507428756	3.99741881705815	0.0682076680956061	0.895795791562646	0.975665889379756
Merged-chr4-11322754-2	chr4	11322254	11323254	+	942.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-623.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	5.24377217747229	5.41965660563635	5.52924668321841	5.21833411597998	5.16653753772747	5.33367238938602	-0.321947503372848	0.355038521940614	0.742052720053678
Merged-chr8-41016367-4	chr8	41015892	41016892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1076.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	6.09860453415642	6.35494947287132	6.2396659480691	6.67163417517431	6.80666286098486	6.36171566774327	0.651215042529938	0.023724663132091	0.180760165726127
Merged-chr5-93266322-4	chr5	93265832	93266832	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1241.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	6.7494956364459	7.12396028748267	6.96694733302821	7.11576681514928	7.36591862986098	7.27465308023983	0.454346086087545	0.0765315006324685	0.364316766331941
Merged-chr1-58450575-2	chr1	58450075	58451075	+	709.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_022988, intron 3 of 6)	intron (NM_022988, intron 3 of 6)	-5089.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	3.65626697329029	3.77844532436438	3.85870114495057	3.48229631380401	3.58246317914897	3.92669118215753	-0.31696369401161	0.57382601152537	0.870325272361113
Merged-chr10-91137564-4	chr10	91137081	91138081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13618.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	7.10967030320806	7.35215895963193	7.26689369432814	7.14813516643704	7.38608217477036	7.18201821301724	0.00322155484943195	0.989439319388914	0.997597007948949
Merged-chr14-62249119-2	chr14	62248619	62249619	+	805.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43860.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	4.49578721341083	4.48805254522266	4.1779780825945	4.26340980340752	4.22586431495036	4.59475046393857	-0.109706026657751	0.814549068165076	0.956366417809675
Merged-chr1-37544066-2	chr1	37543566	37544566	+	728.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3050.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	2.96221961050955	2.7675799610775	2.93909141598733	2.89597839277649	2.94229096392607	2.76306902137041	-0.083917484262307	0.90612579296635	0.978582776260923
Merged-chr4-6370802-4	chr4	6370312	6371312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	5132.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.20460757437124	7.3809283128698	7.18529302630495	7.10839010934693	7.38895417066406	7.16884824423032	-0.0437531618378652	0.857845307300734	0.966785186918462
Merged-chr8-85081018-3	chr8	85080532	85081532	+	904.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	69.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	7.3634901204438	7.28964134878586	7.65854357617847	7.40713647259216	7.54725759596467	7.42911279089663	0.038353028144437	0.873484309687425	0.970409437516545
Merged-chr19-8942439-3	chr19	8941942	8942942	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144872)	TTS (NM_144872)	522.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	8.24488461799074	8.6886408227949	8.36371996980266	8.18933881782054	8.4530337610745	8.23406392301372	-0.20773329130323	0.378752821243868	0.761238278986952
Merged-chr6-54992972-4	chr6	54992468	54993468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026637)	promoter-TSS (NM_026637)	-101.0	NM_026637	110175.0	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	5.65505543550162	5.99420820121652	5.6867309668688	5.8770615535911	5.82021225041074	5.35040702016416	-0.140863531028181	0.685783541859512	0.916492835935985
Merged-chr10-118797514-3	chr10	118797002	118798002	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71401.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	6.21727263444486	6.08679535778566	6.07163627569517	5.80460177152846	5.92735712218291	5.84982090904434	-0.461212472792598	0.11492778047508	0.452587804955148
Merged-chr5-64290100-4	chr5	64289574	64290574	+	982.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59717.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.88654886475311	5.11917254009983	5.04364214593495	4.76197677975409	4.8758456105024	4.818851282728	-0.43458785081806	0.25722201857196	0.654503829281539
Merged-chr1-165706387-4	chr1	165705930	165706930	+	758.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	1664.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.79216049653365	5.75844853898023	6.03260669669425	6.07966547043543	6.0516209295926	6.29462163688506	0.490642473499238	0.103220334237386	0.428302875939981
Merged-chr13-99189744-2	chr13	99189244	99190244	+	778.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	4921.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	4.82208554195422	5.07954879484714	4.73752584533741	5.32921458306269	5.24123743554073	5.00405498159773	0.647910871319345	0.0949626382272882	0.410893868516428
Merged-chr10-115329341-4	chr10	115328861	115329861	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13770.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	4.96740991496055	5.59820118902765	5.54012535539545	5.53080237997816	5.81615890817031	5.83234859525868	0.629443287973994	0.0935859079523458	0.407445386610443
Merged-chr7-98361428-4	chr7	98360912	98361912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-84.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	6.76202602813046	6.71128760409322	6.8360449725436	6.78350187821494	6.79981091978957	6.6097780548316	-0.0420613082845355	0.867832504872538	0.969442397421746
Merged-chr6-91683420-4	chr6	91682922	91683922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-645.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.6140751546055	7.64358442049531	7.61170338818347	7.79430182664218	8.02028984859716	7.77648609009609	0.360535279865545	0.104170960322502	0.43049308738373
Merged-chr5-64360767-4	chr5	64360264	64361264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107178.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.23417445157872	5.1931444848684	4.9622778946543	4.67043791516759	4.77488052089797	4.8797666979625	-0.81867466151099	0.0330869151978724	0.221831802179178
Merged-chr6-82781077-4	chr6	82780563	82781563	+	914.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6609.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.54533091126499	4.79828764043757	4.72151210337872	4.40721367820054	4.70909820329518	4.16059498172161	-0.558161547558162	0.232183129614019	0.62845798488942
Merged-chr8-94812896-6	chr8	94812333	94813333	+	894.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011332)	TTS (NM_011332)	2380.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	2.6884540162821	2.64726965221265	2.81537672471155	2.73100109650867	2.5990076865223	2.88776549082647	0.12320183108946	0.868198137910902	0.969642939011354
Merged-chr5-121586647-4	chr5	121586124	121587124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	7200.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	6.09606883223979	6.36000332231522	6.77508395598222	6.54162355262579	6.90806328518062	6.65118866531012	0.454339397563273	0.145539870243646	0.50872008079115
Merged-chr19-44397989-3	chr19	44397504	44398504	+	913.43335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 6 of 6)	exon (NM_009127, exon 6 of 6)	9705.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.55735385359625	5.21180484072035	5.38578344962022	5.5124272093322	5.31780472767097	5.19031035779282	-0.0825647652901313	0.816702921125472	0.956754861188725
Merged-chr15-73731057-4	chr15	73730559	73731559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6129.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	6.38728764466652	6.21443008227324	6.61566054350841	6.66083859764787	6.3329140265019	6.75089293413368	0.287207092730971	0.328569614782966	0.720753466910815
Merged-chr6-129514412-3	chr6	129513913	129514913	+	807.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	1856.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	2.90359834145962	2.73440718543054	3.02011530638799	2.6251017554773	2.8906218028355	2.85904417681959	-0.442498618860913	0.550677776025526	0.860724721466829
Merged-chr11-58979462-2	chr11	58978960	58979960	+	921.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	1367.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	5.07206717579145	4.88344145177756	5.18333027353842	6.61442422831469	6.84116190845112	6.21778505375758	2.81620521057642	2.21837773907874e-16	7.92217918082676e-14
Merged-chr2-38927315-4	chr2	38926797	38927797	+	975.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-836.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	5.0665657722169	4.68270237189333	4.91149202659448	4.69499531913741	4.65497909548561	4.49525745520482	-0.62760053632554	0.131659233203066	0.485211332994983
Merged-chr15-35147004-3	chr15	35146484	35147484	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	8822.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	2.55540869970875	2.35431779681411	2.3793957883968	2.49442452892791	2.284703140976	2.58301447789652	0.131352531197435	0.874709877412951	1
Merged-chr5-129501877-4	chr5	129501385	129502385	+	713.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359952, intron 1 of 17)	CpG	654.0	NM_172276	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	6.00374268318333	6.53550279065551	6.24521916698494	6.61103519678618	6.17294223479091	6.4587505534061	0.226589521836687	0.473573444994536	0.82095667016199
Merged-chr16-3722660-2	chr16	3722160	3723160	+	545.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4536.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	3.72721497586253	3.67998785603848	3.72517930728923	3.7922630638757	3.43722027882774	3.63747296258602	-0.287732492727966	0.606943910383303	0.884412183163299
Merged-chr7-5058330-4	chr7	5057857	5058857	+	917.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	1631.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	3.57762914468826	3.83772051246482	4.11094613273173	4.06528970887511	3.50756766979847	4.13503418426105	0.22214407762141	0.709466975442138	0.92399831101738
Merged-chr13-23571817-4	chr13	23571324	23572324	+	977.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	424.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	7.14175004100758	7.22027497693555	7.33383759343802	7.09979063235073	7.4951069548014	7.55076523878093	0.247045241318503	0.331379208121264	0.722673159460747
Merged-chr1-5083170-4	chr1	5082677	5083677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310442)	promoter-TSS (NM_001310442)	91.0	NM_001310442	108664.0	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	7.96244900237699	8.40100868031703	7.79904603314255	7.96170884090867	7.86446643308581	7.63411988564812	-0.364351582098862	0.163970170697915	0.53801075971892
Merged-chr9-57566812-2	chr9	57566312	57567312	+	577.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	5868.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	3.25738064989776	3.38437109903709	3.64361889876418	3.31339055750433	3.13861191458787	3.11320560054235	-0.964356382461116	0.134070320923435	0.489522281074078
Merged-chr8-56865765-3	chr8	56865280	56866280	+	923.1333619999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	314646.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	3.74954487222161	3.57262855551383	3.42347949196796	3.48024270338045	3.21637897485886	3.4383203945965	-0.825323150145881	0.174155691918339	0.55334916165878
Merged-chr17-5493511-4	chr17	5492971	5493971	+	972.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_146073, exon 1 of 9)	exon (NM_146073, exon 1 of 9)	871.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	8.0034878563522	8.06985682624181	8.18927715559992	8.28597425081917	8.16446102321651	8.00161945542147	0.102610170546712	0.636895163973793	0.897256731014262
Merged-chr14-10228196-4	chr14	10227723	10228723	+	928.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	225235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	3.02955152465839	3.18815793711516	2.95267372865635	3.18756374141784	2.74859604292232	3.14701338845279	-0.102502374712053	0.886984478621783	0.973794308941933
Merged-chr1-120948559-4	chr1	120948056	120949056	+	959.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-138849.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	4.0382439794549	4.21995972887923	4.40728201802053	4.04013282350303	3.94025891105031	4.47281551816484	-0.176806062467687	0.728656383592296	0.930478966998914
Merged-chr12-87266739-4	chr12	87266233	87267233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	5.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	7.28852609173955	7.69237467521053	7.47850650432198	7.55073366874417	7.60084659390871	7.14144234929721	-0.0634874062957734	0.809917575935517	0.954862887748354
Merged-chr15-25550471-4	chr15	25549976	25550976	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72074.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.91482218372015	6.70325470811341	6.54255185184639	6.38444874001331	6.48754635616262	6.56689544931617	-0.410507841945563	0.129683014420157	0.48172009397354
Merged-chr4-107347593-4	chr4	107347085	107348085	+	950.839294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205156, intron 7 of 8)	intron (NM_001205156, intron 7 of 8)	-20199.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	5.11268858096588	4.88022819171286	5.18948177620466	5.07532473528521	5.31791537880429	5.45975007112846	0.471802402153673	0.205680495189964	0.596232672929434
Merged-chr2-125673042-4	chr2	125672545	125673545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025613)	promoter-TSS (NM_025613)	-55.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	5.91204687549181	5.49613236217957	4.9200556840825	5.07026531019518	4.80389506721725	5.06635950393559	-1.07436938157089	0.0123853954507841	0.116804259851393
Merged-chr1-38011859-4	chr1	38011377	38012377	+	907.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	13867.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	5.74125293208143	5.9490734202848	6.10713777644799	6.11648911998279	5.89615846770245	5.79437808359219	0.0229370200200042	0.941707810220605	0.987044948326294
Merged-chr5-115475862-3	chr5	115475386	115476386	+	877.9166869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8411.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	2.43795767069829	2.6594471754297	2.51133484532962	2.66461964961428	2.57691275546206	2.71260654080766	0.612394952257418	0.432583642616616	1
Merged-chr11-106156410-1	chr11	106155910	106156910	+	544.0	f1_balb.idr	TTS (NM_011947)	TTS (NM_011947)	3517.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.43310410959106	3.19054895268952	3.55996992650201	3.6533201067639	3.42540777002827	3.82710619744596	0.875186039374795	0.151521030323349	0.518952882025607
Merged-chr1-106030547-4	chr1	106030053	106031053	+	929.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001122676, exon 13 of 14)	exon (NM_001122676, exon 13 of 14)	40147.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	3.08219080361754	2.77025797311912	3.33771740742045	2.96989557514179	2.82067355969512	3.19725172938506	-0.349184213835409	0.635068711512922	0.896439353901449
Merged-chr6-97389758-2	chr6	97389249	97390249	+	620.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	69537.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.53555195817575	4.01779140442203	3.44194013873468	3.60960788922184	3.61106608219278	3.73822481196225	-0.162455327109603	0.786613948450208	0.948530822116986
Merged-chr6-66536143-2	chr6	66535643	66536643	+	760.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	922.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	5.56629158075967	5.94015260646452	5.62696335221469	6.20489788262073	6.58586785798737	6.20821442467586	1.07320224384199	0.000885890323506461	0.0163938783057205
Merged-chr17-27827166-4	chr17	27826663	27827663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	7.36871256292933	7.24859894534449	6.95947428855384	7.01776836162102	7.13103889277504	6.97494352286638	-0.248669622838431	0.325925427780164	0.718362020415656
Merged-chr11-117721953-4	chr11	117721455	117722455	+	839.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198022, exon 5 of 22)	exon (NM_198022, exon 5 of 22)	57693.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.45177751330067	4.43366336163627	4.58020705370267	4.34036848786637	4.35509491642058	4.21466532664899	-0.454298386913987	0.303598545313293	0.700122713774969
Merged-chr3-88939955-4	chr3	88939461	88940461	+	829.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164533, intron 2 of 11)	B3|SINE|B2	10321.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	3.12598907331702	2.9852023935923	3.31021646378263	3.13631732626144	3.06113792604427	3.15969309678677	-0.101446563304558	0.876811325547711	0.971407825796496
Merged-chr17-29441746-2	chr17	29441246	29442246	+	914.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-49299.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	5.34293677411051	4.67803865513411	5.05924317859753	5.54644145994936	5.4621883427504	5.83217078235563	1.09901487875537	0.00607978268844544	0.0704479261857914
Merged-chr9-7570499-3	chr9	7570052	7571052	+	606.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-844.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	5.75238690464654	6.1238012019556	6.41509578678703	6.17865071760252	6.53001880836184	6.24944650728817	0.367033842405127	0.261910885260477	0.659756628141008
Merged-chr7-132713155-2	chr7	132712655	132713655	+	693.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63761.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.53628487602004	4.33879388290411	4.37707871342056	3.93747039486169	3.98669561970721	4.40205492604173	-0.841156154758337	0.084125210529521	0.383754347094289
Merged-chr4-86692061-2	chr4	86691562	86692562	+	674.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-22003.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.16711482495084	3.29805717404966	3.44562115564986	3.54482507903757	3.12174744372895	3.61885732605109	0.522443938716782	0.418062800390184	0.788473936634102
Merged-chr11-117724715-4	chr11	117724207	117725207	+	997.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54941.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	6.18559917804629	6.14128555989881	5.9884057297518	5.95803598979446	6.01641639631146	6.0263066023412	-0.196182033635105	0.495561126273778	0.832520627461371
Merged-chr10-16651817-2	chr10	16651317	16652317	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	443965.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.91844264456474	4.0858656450318	4.35066530415995	4.12893705875482	4.11868691045038	4.37599789056013	0.239723418766594	0.626603694806045	0.892916235446326
Merged-chr12-83753245-2	chr12	83752745	83753745	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10389.0	NM_001205343	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	2.02891108224538	2.00016729305466	2.23617483154388	1.96668742730884	1.99758362476347	2.11748451865114	-0.476444965945645	0.606013967725273	1
Merged-chr14-50893273-1	chr14	50892773	50893773	+	735.0	f1_c57bl6.idr	promoter-TSS (NM_001166651)	promoter-TSS (NM_001166651)	-18.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	2.84724949417594	2.79677734614317	3.05194120823581	2.79144709652585	2.37832004445143	2.95446190735129	-0.849403591898946	0.32656414347754	0.718798752757166
Merged-chr2-156840775-4	chr2	156840332	156841332	+	909.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291124, intron 1 of 3)	CpG	825.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	5.06834374783237	4.50268868586844	4.32717601355519	4.94099547105974	4.52665042804549	4.71285942527877	0.122070857068845	0.799835850511902	0.952304344924511
Merged-chr19-61244897-4	chr19	61244394	61245394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16476.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.60147246691139	5.61145718004106	6.00025262701537	5.67784717860477	5.842767498808	5.75777724146827	0.0478650473080617	0.883204579806848	0.973347392063704
Merged-chr6-129713798-4	chr6	129713292	129714292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	3340.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	4.76941105228056	4.59664676388169	4.97538148527196	5.017278232705	5.05864274287833	5.43201851511856	0.853500535594063	0.0333606111921701	0.222907711882927
Merged-chr7-34168526-4	chr7	34168019	34169019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016682)	promoter-TSS (NM_016682)	10.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	6.72354385732236	7.0612943225884	6.95448761624773	7.01780974558072	6.72440713653048	6.81127175849179	-0.100330159190119	0.704927781434861	0.922606499899836
Merged-chr9-32430655-1	chr9	32430155	32431155	+	546.0	f1_c57bl6.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	36670.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	2.73092126448927	2.65314489848245	2.8497427295192	2.70577965183126	2.37811251615217	2.86395142518694	-0.444811135954944	0.584479956847796	0.874568023559098
Merged-chr11-69759485-4	chr11	69758986	69759986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-853.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	8.65832575286723	8.45057830212438	8.09487968273475	8.46646181972186	8.70981819602063	7.92923940857668	-0.0139047334286275	0.961278015848162	0.990497927102774
Merged-chr17-63932724-2	chr17	63932224	63933224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-5248.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	3.29058224703434	3.37713003176728	3.38977440701413	3.44872638520077	3.49947292209371	3.61898872477746	0.644227144737939	0.27014140635215	0.667139350599521
Merged-chr10-78136153-4	chr10	78135675	78136675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33593.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	5.45478127679567	4.98218349945651	4.88478653565618	5.1878683096658	5.35701224530318	5.42752014417356	0.367541267706794	0.347915543757506	0.735894571925431
Merged-chr1-36308211-4	chr1	36307740	36308740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	507.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	7.55497884969396	7.58411639403955	7.27118679802023	7.19644531119526	7.11638004004752	7.18394028204689	-0.476274702455109	0.0455190497162944	0.269384714707925
Merged-chr18-34247577-4	chr18	34247076	34248076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-118.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	6.32480136153332	5.93214648616892	5.6096717337907	6.36306296828979	6.14734142331316	5.90014093487432	0.262255576506911	0.452122601985075	0.809286173636239
Merged-chr11-20500745-4	chr11	20500247	20501247	+	940.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16D1|LTR|ERVL	-42506.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.41872486120009	2.34803164073467	2.52960492406315	2.40778180526474	2.24565895995173	2.41391350130657	-0.493025896529846	0.550977701464408	1
Merged-chr3-95043099-4	chr3	95042610	95043610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-496.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	6.92854137760349	7.56086544079345	7.24256069570492	7.30602725682474	7.6608670057955	7.11225581778766	0.170008411344675	0.565075732320332	0.866552670637515
Merged-chr2-148572353-2	chr2	148571853	148572853	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-100262.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	3.49738451863825	3.3567824597977	3.1471031918323	3.69755837590742	3.40254112459631	3.57607463852301	0.792504594103491	0.205474953836618	0.596080597722807
Merged-chr16-4728131-4	chr16	4727561	4728561	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	1700.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	5.85034148080349	6.11224314103067	6.12735494648438	6.31363361490224	6.38537510885446	5.90678761085572	0.336329214867128	0.27979025201941	0.67745634482849
Merged-chr9-106230495-4	chr9	106230047	106231047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7949.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	7.05854863121006	6.95635411678226	6.89885136780217	7.2079720932374	7.33540427839188	6.95722502889246	0.317507895300232	0.207178753983671	0.597920729067479
Merged-chr5-123945455-3	chr5	123944952	123945952	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134767, intron 5 of 12)	intron (NM_001134767, intron 5 of 12)	14763.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	4.63139578509657	4.69931561745786	3.77878312881766	3.53823826471296	3.20766041236075	3.47567872839024	-3.62456928005188	2.3720726878709e-07	1.52295852015712e-05
Merged-chr16-91731915-3	chr16	91731421	91732421	+	563.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	2550.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	6.1752354429809	5.98523297805661	5.91948918523101	6.2284344681579	6.23937998353611	6.12121087540277	0.278528827037794	0.334856227941932	0.725198429760335
Merged-chr2-157371611-7	chr2	157371058	157372058	+	899.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	ID_B1|SINE|B4	3964.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	6.38700772663647	6.15020108528179	6.55549527937569	6.51934802672213	6.45978068189964	6.24224225471357	0.0866635240481851	0.763831932766685	0.941835266614065
Merged-chr8-126919456-5	chr8	126918961	126919961	+	692.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26460.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	3.83362091113434	3.67110904344405	3.81064244010765	3.39261766297532	3.35766345779591	3.46100468300741	-1.35421787135864	0.0184096574541755	0.153043831734001
Merged-chr5-5213623-4	chr5	5213126	5214126	+	909.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	52442.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.01371028797323	2.84285441673114	2.83700808675874	3.24801290673865	2.84836266859004	3.09713176871625	0.783959281580909	0.270807507094558	0.66785272822537
Merged-chr7-31132303-4	chr7	31131821	31132821	+	914.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153431, intron 18 of 18)	intron (NR_153431, intron 18 of 18)	-5298.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	5.59189275596959	5.41772141832915	5.69639531366607	4.94777790075303	4.63099151828067	4.74647197581796	-1.64962014386657	1.29486970369723e-05	0.000499738025534504
Merged-chr2-32535215-4	chr2	32534702	32535702	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-157.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.53565580756328	6.77726763064592	6.71383908762726	6.65623778896845	6.52605573180507	6.30609411495745	-0.267067790753118	0.328765541286386	0.720905796252831
Merged-chr8-25980422-4	chr8	25979904	25980904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_029037)	TTS (NM_029037)	-3660.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	7.40879010537423	7.24981876418023	7.35692377714803	7.34983571542486	7.39128213299811	7.48670345557803	0.101572202024685	0.656528090844735	0.904656053867324
Merged-chr4-86668342-3	chr4	86667839	86668839	+	843.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	1720.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	6.28857776694508	6.48484429698968	6.18930458173954	5.87278637332443	5.81722138389347	5.78037815222451	-0.883903857406575	0.00262926535815869	0.038065747153787
Merged-chr17-10874486-6	chr17	10874042	10875042	+	828.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	34183.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	4.29271794796301	4.84084114090036	4.75144531133458	4.3002930971743	4.28945088007744	4.46543695786566	-0.750293540103711	0.10524597449911	0.43295135443328
Merged-chr2-143915425-4	chr2	143914913	143915913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019771)	promoter-TSS (NM_019771)	82.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	6.46015817050007	6.61526913606017	6.12786410599767	6.32912926676444	6.42378433084646	6.21034507317927	-0.162464404133926	0.58026737375518	0.87276455172875
Merged-chr11-82032813-4	chr11	82032319	82033319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2758.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	4.5989186888358	4.44959130010319	4.56778748159503	4.85738970872359	4.71751341613184	4.9375018003894	0.695276177992549	0.0881508968216201	0.39405070499266
Merged-chr9-83535729-2	chr9	83535229	83536229	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12609.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.41715866607822	5.30139563160743	5.15243225069968	5.09495177393321	5.13975959889521	4.88314521652495	-0.507840399245587	0.1661383753735	0.541291434201739
Merged-chr17-45575830-2	chr17	45575330	45576330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-2569.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	2.8183528835298	2.67124293070719	2.98055883789391	2.92098366470706	2.56014745671752	3.16342779650421	0.362384565794065	0.642906609922635	0.899548231805501
Merged-chr7-45123936-2	chr7	45123436	45124436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_000004)	promoter-TSS (NR_000004)	453.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	7.0268672676092	7.42773443663714	7.28218694539697	7.03644175467845	7.28057853390161	7.27167391354444	-0.0829147569584822	0.745794942063864	0.936251303305737
Merged-chr10-95843401-4	chr10	95842909	95843909	+	994.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97254.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.43532463851098	4.28589569364697	4.63907790438844	4.75040875501864	4.40420499479649	4.7421775304874	0.448124751496159	0.313927749743143	0.708312869876137
Merged-chr4-133132257-4	chr4	133131770	133132770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	1637.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.88691973801376	6.60109490904653	6.56739195791645	6.71964102589562	6.79298869790489	6.66089120734542	0.0477463266908093	0.856883259000341	0.966628636076984
Merged-chr3-105024242-2	chr3	105023742	105024742	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	28711.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.1139247314178	7.1017896562355	6.98579325861848	7.04921412336904	7.1893059364709	7.23292782592773	0.129580522793683	0.586303002445139	0.875450945538768
Merged-chr14-121992156-1	chr14	121991656	121992656	+	747.0	f1_c57bl6.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-26963.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	3.01531780285586	3.06085084840088	3.43329615106309	3.74588551965362	3.9075679781603	3.81979391172321	2.65668704170414	6.71146176654943e-05	0.00201970094275242
Merged-chr11-83571323-2	chr11	83570823	83571823	+	747.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	7313.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	5.48857786073391	5.11681910434157	5.71625733652461	5.23287231226657	5.50567272276975	5.57471655882462	-0.0170971113641023	0.963419300661772	0.991116725160803
Merged-chr3-69204221-2	chr3	69203721	69204721	+	702.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18198.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.65879688059211	3.88005461914457	3.70751640642035	4.10469545838221	4.09413309186869	4.17610013272423	1.1207891725121	0.0292718142586055	0.205592058819114
Merged-chr5-64385110-4	chr5	64384624	64385624	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	82818.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.05901093286678	4.00057307322082	4.05823771116875	3.8400652561104	3.86614731118496	4.12604044202344	-0.291011247470844	0.5603018723842	0.865206445804495
Merged-chr5-44127694-3	chr5	44127178	44128178	+	749.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25942.0	NM_001163577	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	1.88607516592757	1.9250458783657	2.14147640388292	1.71107976375043	1.85738922624168	1.82557130540732	-1.66956291567944	0.116213149989752	1
Merged-chr11-72961340-2	chr11	72960840	72961840	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001163336, exon 1 of 21)	5' UTR (NM_001163336, exon 1 of 21)	171.0	NM_001163337	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	2.67299234322361	2.90272291713633	2.79619799044316	2.66859065166009	2.58649991527578	2.61755152293557	-0.940091359246961	0.213510723112175	1
Merged-chr19-8716569-2	chr19	8716069	8717069	+	719.400024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161413, intron 1 of 9)	ID_B1|SINE|B4	-2672.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	1.99283691249469	2.13052420274009	2.20371545518793	1.87041615019544	1.75103560749662	2.15011476498347	-1.47795782795825	0.17038889309805	1
Merged-chr2-130733330-2	chr2	130732830	130733830	+	639.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-35811.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	5.08186413228418	4.96169972491466	4.86493317313468	5.50222597383898	5.27794722747531	4.97181355818879	0.618336656645443	0.107669870541218	0.438371316141982
Merged-chr1-131659728-4	chr1	131659224	131660224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	21410.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	4.41204541554437	4.24844596164659	3.82554774688985	4.6248889621512	4.41165120613677	4.0718511889952	0.526693481816542	0.327132490388722	0.719345672839978
Merged-chr10-59615919-2	chr10	59615419	59616419	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	773.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	3.94516167620868	3.86774644620508	3.7339216103144	3.89819691631245	3.60817455330545	3.8566165148568	-0.221053318537738	0.679571943007342	0.913926664382454
Merged-chr10-128546485-4	chr10	128545974	128546974	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	1270.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	6.25192389203554	6.39905547535033	6.0936372801593	6.26216604676686	6.44944309145246	6.26295488293963	0.117648443998331	0.679230749878674	0.913693374830142
Merged-chr11-68443490-4	chr11	68443019	68444019	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	11394.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.66551797433948	4.90406898003966	4.7525966145093	4.61068090042753	4.29993693595649	4.40157003016038	-0.822116820333814	0.0554454010031783	0.302796955835999
Merged-chr12-8522336-2	chr12	8521836	8522836	+	998.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	17230.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	5.79748935812958	5.74020436790742	6.12571700195919	5.77602846281243	6.08245470791304	6.06051369601868	0.165515254583655	0.602720299973447	0.882397657327329
Merged-chr18-75368090-2	chr18	75367590	75368590	+	982.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001042660, exon 1 of 4)	5' UTR (NM_001042660, exon 1 of 4)	725.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	5.88092108714344	6.10183725245193	6.26235625651245	6.17249999486355	6.39906710003314	6.34129010577	0.382470209060763	0.193575113558281	0.580793707892799
Merged-chr8-111536045-2	chr8	111535545	111536545	+	733.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-595.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	5.34156453396037	4.90788616895844	5.06417337066953	5.34361938639097	4.76888207098842	5.3523194409387	0.112866479370645	0.786379275136256	0.948483724840008
Merged-chr5-63969828-3	chr5	63969349	63970349	+	750.888855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-952.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	5.45484163521142	5.20210319341602	5.39943379302603	5.64475981547511	5.67188771491559	6.01391276325726	0.797621322271666	0.0191787420834218	0.1572042661743
Merged-chr10-128549268-4	chr10	128548771	128549771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-103.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	7.16230820215578	7.39027926540651	6.85845254933945	7.14965264177647	7.56724768493867	7.34833742955925	0.305756463392851	0.266003457084916	0.663824402864358
Merged-chr10-62507198-3	chr10	62506682	62507682	+	937.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358965, intron 2 of 3)	ID_B1|SINE|B4	575.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	8.66605932884008	8.93083881191354	8.51160998156643	8.42268158504764	8.87952733537966	8.3258562367967	-0.199546641335188	0.434113904526247	0.798164879083877
Merged-chr19-4204140-4	chr19	4203643	4204643	+	909.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2540.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	5.29408584563036	5.34339985314873	5.30882942989812	5.12874938346161	5.14668249048735	5.43102785241597	-0.169236869229916	0.629933165442891	0.894462096078022
Merged-chr19-53194281-1	chr19	53193781	53194781	+	551.0	f0_balb.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	50284.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	2.43212592689648	2.48817484971519	2.24622581070316	2.63077971168666	2.32460676249555	2.59115833161133	0.754813986804176	0.383845127730755	1
Merged-chr13-112016197-2	chr13	112015697	112016697	+	969.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME3|LINE|L1	148261.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.14956775175385	3.3363825163529	2.95357581458688	3.21020775803526	2.8700419393201	3.21098836694078	-0.245644950277043	0.726745241152457	0.930008582107804
Merged-chr4-102515165-4	chr4	102514650	102515650	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-54910.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	3.63796736665498	3.48735492003114	3.87936224440177	5.60553652557071	5.54651769338649	5.60433148547933	7.08550212466073	3.26529220707222e-12	5.73203447185792e-10
Merged-chr9-35124456-4	chr9	35123940	35124940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027030)	TTS (NM_027030)	-7576.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	7.23661788557325	6.87518945858546	7.37245892266324	7.1363469971568	7.24963113562173	7.36700395481378	0.120311911673736	0.646342125178822	0.900987344019692
Merged-chr7-126798456-2	chr7	126797956	126798956	+	832.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177307, intron 1 of 9)	intron (NM_001177307, intron 1 of 9)	722.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	7.24481151304757	7.51545293797521	7.2946434870682	7.0444540664636	7.29526830417521	7.5279290099275	-0.0894211419341705	0.729281899984629	0.930601789377265
Merged-chr10-127655468-4	chr10	127654979	127655979	+	687.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009284, exon 13 of 22)	exon (NM_009284, exon 13 of 22)	11224.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	3.97915544762954	4.17832963324688	4.16627438127036	4.34277888688035	4.24829049727877	4.36768399620814	0.572381239576635	0.218624146198101	0.612741862631882
Merged-chr1-164275633-4	chr1	164275132	164276132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029115)	promoter-TSS (NM_029115)	34.0	NM_029115	74895.0	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	3.42569990934548	3.42148964308704	3.78973047296979	3.49589655881497	3.54443000363274	3.33267070161494	-0.300682239078478	0.617899595802885	0.88901128365408
Merged-chr11-29547831-4	chr11	29547321	29548321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028504)	promoter-TSS (NM_028504)	-129.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	7.34142723221647	7.6853141204809	7.59601354962326	7.63450927265062	7.67863710413701	7.55688989939581	0.113925580285289	0.626903681227112	0.892975730763041
Merged-chr17-70833655-4	chr17	70833192	70834192	+	875.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13085.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.57102269610236	8.8530199653794	8.47978437522747	8.60386116885518	8.92511356286182	8.42595841891235	0.0367115567431079	0.879774757272682	0.97222027734734
Merged-chr11-6680136-7	chr11	6679720	6680720	+	878.9761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-19984.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	4.45691166442119	3.90711134288617	4.61683044949324	3.66401611827706	3.64327963090507	4.08254809443567	-1.62004203904522	0.00464442421285623	0.0582095571476639
Merged-chr12-117483134-2	chr12	117482634	117483634	+	830.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33345.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	3.40317330483111	3.31608132003321	3.32361580159468	3.36221850840486	3.36781575551175	3.8046376362609	0.635963523932092	0.300704863873576	0.697410152504161
Merged-chr9-118677498-2	chr9	118676998	118677998	+	954.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-34194.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.81700009322153	3.95719498486663	4.03292679392799	3.88969802871837	3.93848755170242	4.10070541893931	0.120910382474523	0.810046477213209	0.954923881842298
Merged-chr10-117323963-4	chr10	117323450	117324450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31082.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	5.12569654479945	4.97652143222222	4.89261561236925	5.22748896937344	4.83663373818088	5.066893394433	0.0873950460470741	0.82135519419309	0.9579800868
Merged-chr2-127788910-4	chr2	127788409	127789409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-18.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	5.82533452836933	5.97638646453607	5.35672956129002	5.64182667004243	5.97509056809169	5.24365661372105	-0.155496774192964	0.692007743188163	0.918541547639936
Merged-chr2-6469369-4	chr2	6468847	6469847	+	994.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	116611.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	2.89260553468031	2.59042925592212	2.97753449267659	2.82171599367656	2.61254105376206	2.81406539913647	-0.395904103371921	0.602065630791962	0.882216729892358
Merged-chr6-83053427-2	chr6	83052927	83053927	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013586)	TTS (NM_013586)	-1094.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	6.59721854088077	6.70855570592414	6.57654254010864	6.81799431909762	6.67550489554581	6.22156671791003	-0.0371601933538318	0.897958504173327	0.976213110836171
Merged-chr14-54617993-4	chr14	54617461	54618461	+	967.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011186)	promoter-TSS (NM_011186)	34.0	NM_011186	19173.0	Mm.8911	NM_011186	ENSMUSG00000022193	Psmb5	-	proteasome (prosome, macropain) subunit, beta type 5	protein-coding	7.06526608664487	6.82307446840215	6.76235443579429	7.21562235452068	7.12310805479962	6.70542773504052	0.225055819871116	0.414770245539603	0.786019635735451
Merged-chr2-27540298-4	chr2	27539791	27540791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	25144.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	7.85514608689667	8.31180337495358	7.79857239417577	7.88013726926186	8.34830505703893	7.58002848071287	-0.0409877175243744	0.889513164948732	0.974240173857916
Merged-chr4-6384731-4	chr4	6384247	6385247	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016807, intron 4 of 8)	intron (NM_016807, intron 4 of 8)	19067.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	6.10365299583919	6.1415941015984	5.64424186086216	6.02361302578938	5.99929709498494	5.3102771459868	-0.280093614042404	0.455241640808475	0.810850567748235
Merged-chr3-129643332-4	chr3	129642771	129643771	+	878.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81815.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	4.37327513228886	4.39745660207472	3.99825422819978	3.70393986053892	3.67748631859716	3.68738241951956	-1.82383007923931	0.000622682990235913	0.0124818612988557
Merged-chr6-136808847-4	chr6	136808327	136809327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	579.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	8.91969421385134	9.13942190631773	8.63545763579017	8.62608109364677	9.03916502933371	8.7633641603618	-0.129748350468693	0.591724054942366	0.877726471452175
Merged-chr2-156864505-4	chr2	156864025	156865025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 1 of 3)	B4A|SINE|B4	1403.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	7.50093624173415	7.19135416658729	7.33775776945091	7.44441208572437	7.3652123166255	7.25765156307114	0.0159088738020838	0.947112327080878	0.988008807662239
Merged-chr7-80900574-2	chr7	80900074	80901074	+	769.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152101, intron 2 of 6)	intron (NR_152101, intron 2 of 6)	695.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	3.38881408860366	3.48519831252407	3.44077941037605	3.13307131871712	3.15791645156664	3.17085754747481	-1.17912445581227	0.0584260615041972	0.312496875182025
Merged-chr5-117357023-8	chr5	117356519	117357519	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021539)	promoter-TSS (NM_021539)	-286.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	7.07531349067702	6.18982162229631	6.36144708674496	6.95366909990769	6.23433135630783	6.58869792570393	0.0240526989906504	0.948280286649683	0.988083630162243
Merged-chr8-122550979-2	chr8	122550479	122551479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357349, exon 1 of 51)	exon (NM_001357349, exon 1 of 51)	350.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	7.08416308739295	6.83823016045139	7.08637415986731	7.21616152914738	6.65973710729409	6.69799995170283	-0.182304099183122	0.526334105172673	0.849395505429032
Merged-chr12-33315411-4	chr12	33314922	33315922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	12907.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.24919142217156	6.40416597199115	6.39578793668761	6.53782585493287	6.68915844571136	6.49213476628585	0.378247627926734	0.158291313710033	0.530002962906299
Merged-chr18-40439862-4	chr18	40439356	40440356	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	181495.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.64896791618071	2.72859516759811	2.71600851841583	2.9310496646534	3.34364640065091	3.16210176841274	2.36673607781363	0.00204785085797715	0.0315299477224167
Merged-chr15-9130576-2	chr15	9130076	9131076	+	683.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9878.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	6.20725118309813	6.29758656224991	6.42169823327048	5.94940872437725	5.94080274659725	5.82064772749783	-0.676446349326213	0.0191844290981634	0.157208782391174
Merged-chr2-132096027-4	chr2	132095524	132096524	+	946.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355431, intron 2 of 6)	Lx8|LINE|L1	49084.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.63596458496083	5.40919122802935	5.40493059533446	5.18619616543443	5.24547909099632	5.17878552864291	-0.563180287600076	0.101902124531125	0.425800000330024
Merged-chr3-27200237-2	chr3	27199737	27200737	+	626.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	B4A|SINE|B4	17233.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	3.41232379617738	3.65462438834661	3.48881250538373	3.50365415180682	3.56815245481274	3.76524793495399	0.307991347683586	0.592610249415457	0.878142077122388
Merged-chr13-40944260-4	chr13	40943772	40944772	+	989.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133219, intron 1 of 2)	RMER10A|LTR|ERVL	26638.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	3.98962940236477	3.71907033242116	3.51770485663076	3.71774613308841	3.69745569113842	3.91078861148089	0.0297163742080385	0.958001681095089	0.990000537228272
Merged-chr2-155071230-3	chr2	155070708	155071708	+	689.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016661, intron 1 of 9)	L2|LINE|L2	3289.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	3.93614432111136	3.88018503686313	4.12208909953435	3.65414264033626	3.6624877118172	3.76407821962658	-0.923455229093614	0.0799843929236588	0.37406370089882
Merged-chr8-13874981-4	chr8	13874476	13875476	+	882.3541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181854, intron 1 of 1)	PB1|SINE|Alu	5335.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	4.33741304046254	4.06091610281081	4.36123932331787	4.34216706598763	4.33213683896034	4.38545432562238	0.259036094271342	0.571822001826922	0.869711287709558
Merged-chr2-163685955-2	chr2	163685455	163686455	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-8082.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	4.42193044161674	4.41195656263271	4.47837879407147	4.45202009019465	4.5358989327089	4.58563642936624	0.223628240107803	0.597992021155691	0.880511769533228
Merged-chr3-103172854-4	chr3	103172370	103173370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356330, intron 2 of 5)	RCHARR1|DNA|hAT-Charlie	1215.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	6.1220902555469	5.94298386536537	5.45470800616627	5.90669963734574	5.96898075096088	5.38399869364509	-0.160005594853361	0.669366660473817	0.909615408611738
Merged-chr13-60705136-1	chr13	60704636	60705636	+	815.5	f1_c57bl6.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	81228.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.14777881636679	4.44189507156321	4.37192714613382	3.92803479928636	3.58343076491458	4.31475707813924	-1.02159280894067	0.0651240247928419	0.332770809074109
Merged-chr1-87849499-4	chr1	87848975	87849975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3812.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	6.73447005379836	6.67125273006823	6.2057530711252	5.99123464242189	5.99349815241848	5.88489103128102	-1.01181695535138	0.000819658027318059	0.0154198745505496
Merged-chr7-105744386-4	chr7	105743876	105744876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-38.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	7.63890059495953	7.74063056279152	7.571582271847	7.95976874318775	7.82289507776033	7.69459268038644	0.255937769812047	0.253372298226071	0.650818120355465
Merged-chr10-111178102-6	chr10	111177586	111178586	+	832.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	13284.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	5.84054850421432	6.09153005349102	5.46822480641038	5.53526753171043	5.47888018114714	5.4047470076952	-0.668302070996368	0.0545470740682739	0.299944021878994
Merged-chr3-96500489-4	chr3	96499974	96500974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24711.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	6.48904742651256	6.28045238669396	6.39501407924194	7.30196749886487	7.4651107311636	7.18840007641518	1.45084727137246	1.34884672975572e-08	1.18266426437844e-06
Merged-chr4-53232591-1	chr4	53232091	53233091	+	742.0	f0_balb.idr	Intergenic	Intergenic	-13605.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.06950971260801	4.48482033436713	4.35819182342636	3.92079795825201	4.1960615980809	4.38301505018038	-0.380277546513175	0.446731977202991	0.806122541261987
Merged-chr5-146299652-4	chr5	146299153	146300153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359990, intron 11 of 12)	intron (NM_001359990, intron 11 of 12)	68403.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	3.84059962264369	3.92380821335313	3.92565262514884	3.86808864639401	3.7299794563387	3.94600515259075	-0.164828798340079	0.747887359790123	0.936842040609005
Merged-chr9-70692172-2	chr9	70691672	70692672	+	761.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	13190.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.90017086162922	4.91224942142668	4.88576987092738	5.20338694861163	5.16935430663994	4.98915474483686	0.491766344665331	0.18292082213577	0.565905788268466
Merged-chr17-32114238-2	chr17	32113738	32114738	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22815.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	5.87681410415071	5.86819405282491	5.01370684214516	5.71788378467233	5.07990047678088	4.72201383014627	-0.757595505228417	0.366724923374628	0.751883683820127
Merged-chr11-102495797-2	chr11	102495313	102496313	+	694.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-25930.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	5.06858458847743	4.60593098950045	5.10292252392866	4.81035656731728	5.01351803617428	4.85322490402312	-0.0836991896013322	0.83933578179364	0.962784121274377
Merged-chr12-12176809-4	chr12	12176297	12177297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85342.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.80690313446001	5.00156348549561	5.08331079632163	5.24056190384807	5.08042678578257	5.04449311833034	0.346504886130399	0.353519571376654	0.740736914917923
Merged-chr18-56466632-4	chr18	56466138	56467138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	34506.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	5.88079292126274	5.84181236059543	6.38937002888643	6.04171621502187	6.11407041100387	6.19071989376991	0.115195618506494	0.718657459844074	0.927415661027328
Merged-chr8-68191950-4	chr8	68191438	68192438	+	883.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84590.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	3.93275306216429	4.03445126275685	4.0479518187302	4.59942897696136	4.48352619346106	4.01466995689621	1.08371458189928	0.0295831861867924	0.20695794150249
Merged-chr15-102247150-4	chr15	102246640	102247640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042727)	promoter-TSS (NM_001042727)	-640.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	6.80151635726777	6.54340453937208	6.87890089029052	7.23896486727084	7.25147789259639	7.14916043065822	0.725459549244701	0.00387388794698464	0.0507140447282407
Merged-chr17-57287056-2	chr17	57286556	57287556	+	924.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	7956.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	4.60273046201837	4.49058405248375	5.15874938967506	4.86499789117395	4.30443794209513	4.7639165174859	-0.260748615806843	0.587679441089066	0.876033486335519
Merged-chr11-97127235-4	chr11	97126705	97127705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11874.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	6.79247086576331	6.59902547867657	6.39544195032004	6.77332102879539	6.80733795368155	6.51312383778653	0.153866097559607	0.578524111566532	0.872437129840066
Merged-chr8-18846928-4	chr8	18846435	18847435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026792, intron 1 of 7)	CpG	656.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	7.45615849407446	7.69340062666069	7.679661154212	7.5762771340641	7.52166456609215	7.31188863240022	-0.193147338634283	0.411554542045954	0.783993055982259
Merged-chr17-70849161-6	chr17	70848698	70849698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	592.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.52895977430647	8.41772968467092	8.30072161214677	8.2678473604527	8.60189549368685	8.208515518266	-0.060774744947804	0.79021467414848	0.949368241827272
Merged-chr18-50016920-4	chr18	50016340	50017340	+	908.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-14144.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.83253844636251	5.90663602258495	5.9532331052511	5.83088885403225	5.69158035221229	5.77164244427291	-0.237328330053578	0.431222408461646	0.796745026686968
Merged-chr5-66141700-1	chr5	66141200	66142200	+	645.0	f0_balb.idr	intron (NM_001127382, intron 2 of 7)	RMER15|LTR|ERVL	9278.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.06985197382158	4.45686373093266	4.24338741855744	4.01098559538733	4.20398884532313	4.1736821930649	-0.37508943490057	0.439353729297186	0.801090064804651
Merged-chr1-127976254-2	chr1	127975754	127976754	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_027678, exon 13 of 21)	exon (NM_027678, exon 13 of 21)	107481.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	6.52075682456385	6.54444023484958	6.18225902667675	6.69893542280532	6.99087672092152	6.33127790982218	0.446245746137719	0.150053949261983	0.516770374164608
Merged-chr17-29436072-2	chr17	29435572	29436572	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-54973.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	6.46175640298517	6.10130016868004	6.01677449608298	6.72589885633119	6.98411505680961	6.37047942992802	0.826423987247573	0.00902289473205755	0.0937796626019023
Merged-chr5-127611327-4	chr5	127610830	127611830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6062.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	7.29158605841817	7.31323497847304	7.1652157136802	7.33251809631109	7.57455291974326	7.24739672780854	0.205355199227697	0.394947647742514	0.772579826044138
Merged-chr1-52119391-4	chr1	52118886	52119886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-52.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	7.23220658797682	7.56989549222379	7.22639613437477	7.19431353517866	7.49079190202883	7.41835232991791	0.024581646516935	0.922663038719453	0.982621045978137
Merged-chr14-32160826-2	chr14	32160326	32161326	+	748.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033988, intron 1 of 9)	intron (NM_001033988, intron 1 of 9)	939.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	6.42860127999353	6.62278320475385	6.38791392911829	7.02685520783809	6.66226136201981	6.64759501115861	0.480316794701318	0.0847787827560417	0.385584747502854
Merged-chr1-60580058-4	chr1	60579559	60580559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-13294.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	5.44812221496875	5.36024209249064	5.67356279953551	5.47468828861971	5.59756409544988	5.73501604684493	0.211724034130084	0.52555133817909	0.849027787811941
Merged-chr13-111805897-4	chr13	111805419	111806419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3074.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	8.07086645485618	8.12505764040464	7.76460218889132	7.9444641210823	8.39955371178854	7.80316434696719	0.11756482108091	0.655957696688864	0.904511343918715
Merged-chr7-129995704-4	chr7	129995201	129996201	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	33536.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	4.13983193852409	4.03883935875222	4.38352971108459	4.12394947241954	4.09676074193411	4.14718728823679	-0.181563577190493	0.704677227802447	0.922514359670029
Merged-chr7-127260813-4	chr7	127260306	127261306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023203)	promoter-TSS (NM_023203)	-139.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	5.59841459600426	5.68739752029485	5.92490380325071	5.55780780318146	5.89942988796222	5.43171566832897	-0.139201454739898	0.686345267086301	0.91669877499987
Merged-chr19-4306409-4	chr19	4305899	4306899	+	935.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-177.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.55577624303685	4.61928826574637	4.73368214194261	4.69657044593225	4.28356564956488	4.56435666247253	-0.279998870556924	0.520739088375042	0.846662720861138
Merged-chr10-98937930-3	chr10	98937419	98938419	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	22767.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.43752501180831	3.29765612364071	3.41632373369134	3.38176536589978	3.32602083938383	3.53957977077141	0.112393708668224	0.849915908375802	0.964746847431705
Merged-chr3-95626910-2	chr3	95626410	95627410	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 2 of 2)	intron (NM_001026212, intron 2 of 2)	1930.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.93352911523796	3.70828572727767	4.12140434175715	4.15751502559904	4.12825350021484	4.04985986864056	0.570598189371158	0.260415947997399	0.657803047902843
Merged-chr16-50779586-4	chr16	50779080	50780080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3829.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	5.28634559830256	5.20142426037099	5.34433783829006	5.05883785829711	5.34512381160978	5.15212740347976	-0.151701506051029	0.671011987288697	0.910289924720412
Merged-chr5-3381888-4	chr5	3381337	3382337	+	979.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	37944.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.74317239355105	5.58138568147834	5.24894949291432	5.3440760775864	5.31441279641761	5.17409716274096	-0.519518257255597	0.144563936331873	0.507348668044083
Merged-chr9-95514487-1	chr9	95513987	95514987	+	601.0	f0_c57.idr	Intergenic	MERVL-int|LTR|ERVL	-2491.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	3.01761201475431	2.82362701224246	2.6812145334615	2.89357375551816	2.76938220171615	3.06479755773726	0.280506350858697	0.704629832118568	0.922488097794635
Merged-chr9-77911676-4	chr9	77911171	77912171	+	996.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5694.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	8.70130072050943	8.95839970235938	8.32301871287881	8.73490304872778	9.2688916633406	8.40965223832623	0.233942996973648	0.432174748571112	0.797270167804312
Merged-chr9-21616585-1	chr9	21616085	21617085	+	1000.0	f0_c57.idr	intron (NM_001357764, intron 1 of 34)	CpG	416.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	7.62272408200238	7.89212066083411	7.49352422408399	7.64725849779169	7.68324721168569	7.39950561558444	-0.142240036036266	0.562028382364632	0.86560636450104
Merged-chr11-118360784-3	chr11	118360288	118361288	+	797.488892	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5377.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	4.22589121083012	4.25835294297012	4.66251094979831	3.9226168262538	3.69554354379792	4.35296175087808	-1.06452421819114	0.0497038430033029	0.283620722028448
Merged-chr10-77609790-2	chr10	77609290	77610290	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	3192.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	6.10743410915015	6.19532880277421	5.98607722853875	5.61739341445405	5.80416038612307	5.69385192532414	-0.691224026145173	0.0224883606319211	0.174504477428042
Merged-chr5-90696286-4	chr5	90695785	90696785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55758.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	6.05087701880068	6.42952034611772	6.20806375195207	5.56750215897338	5.54151302170914	6.3427081752814	-0.650385776049728	0.0787172188766512	0.370763180589177
Merged-chr2-165329955-4	chr2	165329478	165330478	+	927.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3499.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	4.65117605453673	4.30090967715453	4.7204420657327	4.61410135533324	4.42424504731075	4.95817835748787	0.260584690439785	0.568886249101508	0.868767898077656
Merged-chr14-54402875-3	chr14	54402414	54403414	+	772.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	ORR1D1|LTR|ERVL-MaLR	6558.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	6.03027981250041	6.21341655020938	6.09428584745263	5.65605582156921	5.62081610171746	5.55158700911383	-0.895532388287902	0.00312386827918136	0.0434493049782285
Merged-chr11-69923212-2	chr11	69922737	69923737	+	919.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1279.0	NM_001166593	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	4.66688967647423	4.5365220933643	5.04455986945364	4.64222195533379	4.79122480780362	4.56013924233776	-0.185074359859758	0.668515302187916	0.909204788456481
Merged-chr2-128750240-2	chr2	128749740	128750740	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	intron (NM_008587, intron 5 of 18)	51325.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.98271921711747	6.84112653653995	7.01313911057498	6.92434653841979	7.12233515111964	6.9346582239251	0.0899825116263102	0.716074995006821	0.926567177471454
Merged-chr13-104109643-4	chr13	104109151	104110151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	-37.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	6.89958286491095	7.26452895367338	7.36470813971259	6.82909985687797	6.96261243241874	6.74639498218231	-0.504892081815661	0.0591505875810433	0.314914715685166
Merged-chr18-46153820-4	chr18	46153315	46154315	+	904.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	45003.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.19589464347617	3.03003275613655	3.10016225767831	3.14890297021491	3.2293763666432	3.17253907123765	0.322721942703758	0.614403024956853	0.887435546271868
Merged-chr4-106429325-4	chr4	106428847	106429847	+	931.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183225, intron 62 of 67)	intron (NM_183225, intron 62 of 67)	34978.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	3.8812042020935	3.4067724476209	3.92463998212248	3.27784550654349	3.50211658769284	3.37688059359563	-1.28676756234896	0.0408674763062944	0.252075683357609
Merged-chr9-54734042-3	chr9	54733554	54734554	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025376, intron 1 of 10)	intron (NM_001025376, intron 1 of 10)	495.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	7.47438740438044	7.59487685091064	6.94788981205167	7.42401219606427	7.56137383923365	7.17401595043516	0.034532014087256	0.902518865092108	0.977534352809461
Merged-chr10-8065892-4	chr10	8065404	8066404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-109781.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.27686213632051	6.43534036500869	6.49858046645577	6.41589090616681	6.54481397053598	6.77913276557727	0.289454132253908	0.295861766939391	0.692709629999205
Merged-chr11-107011159-1	chr11	107010659	107011659	+	988.0	f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	-11634.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	4.72559475025562	4.06273648620064	4.24722339776496	3.85181145155778	4.02780577604311	4.27063329665102	-0.888724881753925	0.0938134351674499	0.408020484310726
Merged-chr17-50205364-2	chr17	50204864	50205864	+	995.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14867.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.48442663425713	2.4511458130758	2.66931435057191	2.49847268402635	2.69125921827762	2.55660077278486	0.319341059153018	0.685050895046499	1
Merged-chr7-19474264-4	chr7	19473751	19474751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-15757.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	6.32791774626409	6.07432318532583	6.27947028023507	6.7957569790914	6.94710607181065	6.38066385179222	0.825799481888242	0.0052537041550823	0.0633459231033311
Merged-chr7-55920879-4	chr7	55920345	55921345	+	765.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 24 of 30)	MTC|LTR|ERVL-MaLR	41648.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	4.83161242550216	4.59159306943273	5.00216529061753	4.6054516993465	5.11688939271531	4.92853349919606	0.215218570046474	0.612808606550922	0.886962349908489
Merged-chr11-120159013-4	chr11	120158507	120159507	+	998.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7656.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	4.35392216111429	4.15890659082541	4.75487157804758	4.39652301834644	4.29540325898131	4.67743390558646	0.0585804087862	0.90305886911886	0.977740257615482
Merged-chr1-34466551-2	chr1	34466051	34467051	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	B3A|SINE|B2	6805.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	4.34121359454196	4.49237058888628	4.78780033881157	4.72209950054927	4.70342262276745	4.92207306474928	0.566443088096634	0.185236779759811	0.569445522970938
Merged-chr14-26642415-2	chr14	26641915	26642915	+	780.916687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007479, intron 1 of 5)	B1_Mus1|SINE|Alu	4281.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	4.97263671651558	5.42789431823014	5.2720765272999	5.45195985536562	5.52436162978752	5.65087763736213	0.588149441843182	0.101367621467827	0.424638626949352
Merged-chr11-117330918-2	chr11	117330418	117331418	+	642.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017380)	promoter-TSS (NM_017380)	-797.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.24120579085919	3.49733579996069	3.8535321522515	3.79965095716874	3.34424248753318	3.73142807619544	0.303786234530046	0.633627781780596	0.896059441151508
Merged-chr15-25557260-2	chr15	25556760	25557760	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65290.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	2.55371615124049	2.61547573868485	2.55630015115585	2.66583738217803	2.56471234754827	2.93305464564758	0.8113135930026	0.294577590535006	1
Merged-chr17-5493959-4	chr17	5493440	5494440	+	975.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	1340.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.39445894561018	7.4339771547625	7.49937763314439	7.65977745478551	7.6661273802413	7.29588398393743	0.174752093405268	0.46492357459332	0.816631332252401
Merged-chr16-30598795-3	chr16	30598312	30599312	+	809.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-911.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.24650423001941	5.96263657702	6.35392321714095	6.5741050263667	6.55594138179444	6.21253767549936	0.455840000949852	0.125291638056016	0.473617418651869
Merged-chr2-34755139-4	chr2	34754682	34755682	+	735.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356441)	promoter-TSS (NM_001356441)	50.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	5.29306492207766	5.24470927005833	5.33676479667229	5.05172224061493	5.27039265184298	5.10866294127404	-0.273817161802504	0.43907744476733	0.800937323779458
Merged-chr4-9646555-1	chr4	9646055	9647055	+	1000.0	f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-2838.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	4.6057243866635	4.68639263353548	4.76144766121019	5.46554744747757	5.7947831553027	5.20731766270543	1.77075234311343	5.47798243911254e-06	0.000239271371545237
Merged-chr5-63967005-2	chr5	63966505	63967505	+	995.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1892.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	5.14980329236538	5.14177792850082	4.96611014827375	5.47479704702114	5.19713953910725	5.36983598356947	0.510112456061529	0.156344944989078	0.526826496267448
Merged-chr3-89385695-2	chr3	89385195	89386195	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001355206, exon 2 of 4)	exon (NM_001355206, exon 2 of 4)	1976.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.97880711638178	3.85517193235167	4.50619032068453	4.26020623136215	4.34412925586447	4.37364993540783	0.529310813946572	0.300914681784138	0.697653874358754
Merged-chr3-105802015-6	chr3	105801518	105802518	+	994.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	-637.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	7.03916684921403	7.38721226496909	7.16794634761877	7.15786964648152	7.55080020284614	7.45965654903224	0.287149660019787	0.267073698103774	0.664533604611669
Merged-chr2-70825706-4	chr2	70825230	70826230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172664)	promoter-TSS (NM_172664)	-250.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	7.43463125116855	7.03184217757314	7.09951028814693	7.33135928475064	6.818004355814	7.10608887716738	-0.158031804252141	0.571846486108739	0.869731184538705
Merged-chr7-80842655-2	chr7	80842155	80843155	+	622.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19453.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	2.93559460745356	2.82943027532874	2.68892978994659	2.98054647986388	2.89937285528302	2.95470978981549	0.573279921434141	0.422867757722551	0.791602902730015
Merged-chr4-128811569-4	chr4	128811058	128812058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-5446.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.98515053992055	6.24786815786022	6.315963799176	5.99390891603293	6.14346722485726	5.92652974877498	-0.260734705463926	0.383102826488269	0.764535004943228
Merged-chr12-32953977-4	chr12	32953495	32954495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_044986)	promoter-TSS (NR_044986)	50.0	NM_013635	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	7.34400647310742	7.48947093418009	7.40358280339535	7.50461651878175	7.49231156286585	7.08799186297128	-0.0428533430694253	0.862779502155478	0.96809238390547
Merged-chr5-137747621-3	chr5	137747109	137748109	+	967.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029805, exon 2 of 6)	exon (NM_029805, exon 2 of 6)	1640.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	5.05467693005699	5.423648936762	5.93866322032788	5.55849679870243	5.30366071833852	5.89256157432819	0.159042523719245	0.701511456117888	0.921353558219906
Merged-chr1-144247696-4	chr1	144247198	144248198	+	939.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1406.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.95250106331085	7.29233082008117	6.72936806484597	6.77687015388162	6.90583221222508	6.5236590834146	-0.412213147652564	0.153505586276599	0.522476745799114
Merged-chr7-27688500-2	chr7	27688000	27689000	+	808.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	-840.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	3.51384336813332	3.65201027239468	3.74296139976518	3.82456291231306	3.58903793758121	3.43170775861077	-0.0230212684137856	0.968097971562971	0.992673830751364
Merged-chr9-48390089-3	chr9	48389580	48390580	+	804.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172921, intron 4 of 8)	intron (NM_172921, intron 4 of 8)	28039.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	3.37805238927696	3.45472832984721	3.54012143648507	4.71387462891421	4.84070218166111	4.6966879410316	4.53633898201579	2.40390501171343e-11	3.63020196396827e-09
Merged-chr10-127421710-4	chr10	127421208	127422208	+	948.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	841.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	6.83521725581164	6.92171070254233	6.54245258884412	7.02266586565313	7.23771328618016	7.22653621469756	0.577965436539942	0.0266769621060596	0.194383863963785
Merged-chr16-16599938-4	chr16	16599385	16600385	+	797.841675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301817)	promoter-TSS (NM_001301817)	93.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	2.88539941596407	2.80484784030555	2.70319462998579	2.6964626521113	2.52353469903735	2.83889909549686	-0.62147098428268	0.413837918619186	0.785389689181307
Merged-chr8-40644999-2	chr8	40644493	40645493	+	824.833374	f0_c57.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-10201.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	3.01601900812703	3.05132684976127	3.00637443707378	3.62289777818483	3.77618774893748	3.77102285923761	2.99679302571853	1.64875885571469e-05	0.000617694402819937
Merged-chr1-149949540-2	chr1	149949040	149950040	+	556.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	RSINE1|SINE|B4	11750.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.87147177350584	4.99865600493882	4.7735754205965	5.15459780446765	4.802001289898	5.12923023229066	0.301327037750949	0.443976913691598	0.803900227062943
Merged-chr11-110372001-4	chr11	110371498	110372498	+	733.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27104.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.37280932667525	6.48031781154163	6.22662222608782	6.68885463706831	6.92929701506352	6.56148067321608	0.597363396808095	0.0313754935724021	0.21461318107652
Merged-chr11-23304911-2	chr11	23304411	23305411	+	928.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1984.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	3.89878020542896	4.10175451575207	4.22039306340331	4.23261750999824	4.36097151556797	4.53570115134226	0.833494725609908	0.0807360662587188	0.375953974313704
Merged-chr6-24966321-1	chr6	24965821	24966821	+	544.0	f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10196.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	3.85550618531963	3.80995587721693	4.27008686001876	3.66026830961527	3.87533636867958	4.41282315890336	0.076919611589507	0.894625814954511	0.975576532925631
Merged-chr9-69993182-4	chr9	69992689	69993689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	3723.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	5.79314439118211	6.0009573815666	5.829402749001	5.9883664590501	6.05744241880624	5.84018571612085	0.160419891552561	0.595467350792472	0.879539491694225
Merged-chr17-12915325-2	chr17	12914825	12915825	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026310, intron 2 of 3)	intron (NM_026310, intron 2 of 3)	766.0	NM_026310	67681.0	Mm.290166	NM_026310	ENSMUSG00000057388	Mrpl18	1010001C05Rik|C79879|HSPC071|MRP-L18	mitochondrial ribosomal protein L18	protein-coding	4.97820719922856	5.04233901097953	5.08030558274259	5.12608556606014	5.04982784057889	5.30320559787666	0.258814041429144	0.477356225742218	0.823237639056184
Merged-chr5-32133730-4	chr5	32133217	32134217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2755.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.9079096493385	5.79401411909632	6.68897881956632	5.86803220572007	5.92537188501965	6.22923493206714	-0.295183907164144	0.430932949500792	0.796614699034595
Merged-chr12-111446115-2	chr12	111445615	111446615	+	975.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_009396, exon 3 of 12)	exon (NM_009396, exon 3 of 12)	3454.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.60324368322734	4.29202902401631	5.23260894991704	5.06043115300308	4.65062979114913	4.81135600068981	0.197764955036939	0.686682904459413	0.916855391040596
Merged-chr12-80939985-2	chr12	80939463	80940463	+	629.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	5436.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	7.22161172949736	7.56425396846896	7.1593320602773	7.55878287631852	7.79825697677566	7.38472778422741	0.387665001440434	0.137864930996294	0.496296223517512
Merged-chr12-102445643-4	chr12	102445152	102446152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5839.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.58184831889506	7.46129775598436	7.25995298907901	7.53717903591644	7.70835532303153	7.16635450066724	0.0794912417019167	0.762064465195575	0.941406354590576
Merged-chr7-66389356-4	chr7	66388837	66389837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	-996.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	6.27802744681045	6.39736587806272	6.36208449434406	6.54942969398476	6.81279110459466	6.7157284273212	0.568823500793625	0.0328990111952555	0.221016733027037
Merged-chr11-107482616-2	chr11	107482134	107483134	+	938.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025894, intron 1 of 10)	intron (NM_025894, intron 1 of 10)	3106.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	4.15874733109719	4.34156402189664	4.17687538740989	4.55157841766505	4.52308874477974	4.04106170763994	0.449826728546338	0.353710179202882	0.740929143625235
Merged-chr7-13023260-4	chr7	13022767	13023767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011588)	promoter-TSS (NM_011588)	-885.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	4.54501839725623	4.60520228331282	4.66311319695351	4.35548847226364	4.57334500250513	4.39641073434853	-0.36873642547474	0.389683040609036	0.769291741623303
Merged-chr9-118614010-2	chr9	118613510	118614510	+	848.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	7301.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.42466744227732	5.21829524578389	5.61798273915397	5.40255921466448	5.34163118372734	5.62794675733037	0.0657204575518138	0.851286114299681	0.965211450762173
Merged-chr14-63860874-2	chr14	63860374	63861374	+	983.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028228, intron 1 of 6)	intron (NM_028228, intron 1 of 6)	562.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	6.10405364611843	6.40561348211961	6.60636396030161	6.4761538590714	6.25191963579343	6.29301932562778	-0.0597299574775963	0.840445314218299	0.962819298477451
Merged-chr19-11818037-2	chr19	11817543	11818543	+	974.5	f0_balb.idr|f0_c57.idr	intron (NM_011502, intron 1 of 10)	MIRb|SINE|MIR	1360.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	8.06546042587495	8.38506363086223	7.80289411113694	7.8780523670495	8.02432414119095	7.38246968247208	-0.445180847159266	0.116246765781004	0.455184041746154
Merged-chr7-30563727-4	chr7	30563220	30564220	+	947.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025498)	promoter-TSS (NM_025498)	380.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	6.38543151924391	7.17476389945788	6.82785494166392	6.86164794505782	6.95885743711013	6.84183856013581	0.074778983005039	0.80705101388387	0.954421557180913
Merged-chr2-73397122-4	chr2	73396628	73397628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10648.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	4.86384582630802	4.81001605720878	4.55853609405442	4.8569827560245	4.95160937255928	4.8334982338536	0.280501254669264	0.481535894903087	0.825121444939066
Merged-chr3-108878606-4	chr3	108878044	108879044	+	765.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	11464.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	4.35698301512964	4.46973678600287	4.65369514634036	4.92809818765333	4.70673112405868	5.03943638077221	0.941436062842638	0.0249689073020622	0.186874424221059
Merged-chr7-132569007-4	chr7	132568518	132569518	+	913.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 2 of 9)	intron (NM_016978, intron 2 of 9)	7380.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	3.8209829350489	3.95393720222665	3.89805412981134	3.52256865559523	3.59712613759925	3.82040358556932	-0.818102896557171	0.130726473064961	0.483186228268893
Merged-chr17-86114404-4	chr17	86113914	86114914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030133, intron 10 of 20)	Lx8|LINE|L1	30761.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	4.69704092287476	4.41243802819899	4.17896184908375	4.04400371392197	4.33150809833617	4.14955803727343	-0.706359975010601	0.149403733916693	0.51586399831582
Merged-chr13-117020727-4	chr13	117020225	117021225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4791.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.57893696477348	3.29512583688349	3.4276284214003	3.8717373674189	3.69749400239377	3.50102338372921	0.930066755288303	0.116157028396584	0.455084593523009
Merged-chr3-21953077-4	chr3	21952584	21953584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123568.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.36438199902636	7.56639734303023	7.1843679499721	7.41053822688879	7.62875166452945	6.88817580352309	-0.0417798390508048	0.885765827739436	0.973636976161493
Merged-chr15-103333889-4	chr15	103333377	103334377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	461.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	6.14821968709124	6.19524970024011	6.94779001486132	6.66579871664541	6.58345023808037	6.80616180606331	0.335550856627287	0.313362943140075	0.707942154711635
Merged-chr15-57921568-4	chr15	57921077	57922077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081396, intron 3 of 20)	Lx9|LINE|L1	9378.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.46142210006485	7.50461972618133	7.31258904316645	7.57615793418148	7.74921918678576	7.41482901893391	0.236217097740708	0.318025232124524	0.711817713144205
Merged-chr9-70194825-4	chr9	70194344	70195344	+	863.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12506.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	4.2872029388917	4.35604840411494	3.87183784907559	3.73208168382471	4.02398124221758	3.77693021571823	-0.991922256757313	0.0681588659608153	0.341651895496422
Merged-chr15-59568812-4	chr15	59568321	59569321	+	774.383301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-79833.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.68534317153112	3.24626463581838	3.62724005778412	3.44167637650748	3.6802250699296	3.53829495663636	0.10058586007359	0.868649082577357	0.969708434868159
Merged-chr16-5050951-3	chr16	5050466	5051466	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356320, intron 1 of 16)	intron (NM_001356320, intron 1 of 16)	909.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	6.79534949228656	6.99513883791227	6.98881918802011	7.02969010744944	6.80486287573453	7.02034102540015	0.0345793588150762	0.890942340128543	0.97464608132071
Merged-chr15-55380206-4	chr15	55379703	55380703	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 10 of 47)	intron (NM_181277, intron 10 of 47)	72453.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	5.06599965512332	5.00527673930366	5.16812560016674	4.97866072869163	5.15167008569682	5.10004679705795	0.0115025089201355	0.974816822165265	0.994379842575515
Merged-chr7-25787121-4	chr7	25786617	25787617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 2 of 19)	MIR|SINE|MIR	1616.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	7.42035097379863	7.69180474980236	7.33250441672019	7.82666882511176	8.12030119683909	6.98582168213223	0.355243015035955	0.284313015569374	0.682056145293253
Merged-chr7-143023695-4	chr7	143023196	143024196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110354, intron 4 of 4)	intron (NR_110354, intron 4 of 4)	18037.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	5.86255302874913	5.25544839807622	5.52757813548418	5.94607719126034	5.87542445399807	6.06458859913326	0.690143478445213	0.0467066812160284	0.273399193149721
Merged-chr19-5850876-2	chr19	5850376	5851376	+	691.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026169)	TTS (NM_026169)	-5396.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	4.42580638671722	4.03816541177446	4.17556748618204	4.3232583604346	4.06711367855938	4.33430024568611	0.0399798430854968	0.934362170587737	0.985707838096286
Merged-chr2-167817081-2	chr2	167816581	167817581	+	636.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-115246.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	2.32945024434932	2.19397038776317	2.43517431112724	2.36273693815286	2.21932375822726	2.18038513222634	-0.422594578539761	0.626338649853204	1
Merged-chr14-21847793-5	chr14	21847274	21848274	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	196.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	4.8848331864778	5.03357456451046	4.79463144887267	4.62968663764631	4.57158535500286	4.4841801633341	-0.80758627174192	0.0463855393434789	0.272537548233249
Merged-chr5-125405887-8	chr5	125405368	125406368	+	893.064575	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15851.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	7.08595240999311	7.38370642462345	7.00276757776133	7.49971814880336	7.75899740764584	7.38523499343432	0.574095592284818	0.026482764937036	0.193432049234629
Merged-chr8-82403218-4	chr8	82402696	82403696	+	993.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-610.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.81594175552624	7.29466228344461	7.2429082772897	7.10731465132588	7.52033632682737	7.44030525094879	0.351967395434798	0.201189985633565	0.590750207399366
Merged-chr4-19849395-2	chr4	19848895	19849895	+	738.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30668.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	3.7219180094182	3.9325570677944	4.05022365796436	3.58082551548857	3.85508816447707	3.98134919462672	-0.282928925477619	0.60317039453308	0.882544198306255
Merged-chr16-8672195-4	chr16	8671699	8672699	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-46.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	5.81270742423191	5.78935714757739	5.89775526420686	5.85228783543903	5.66488567998758	5.83878082744804	-0.0871404247235036	0.775231682731783	0.944594834759211
Merged-chr2-166655501-2	chr2	166655001	166656001	+	811.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	MTE2b|LTR|ERVL-MaLR	58331.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.47025769517063	4.57674130072103	4.64681732678277	5.02208197238497	4.87150324332548	4.49787721478843	0.61250995333909	0.150987357439221	0.5182047532504
Merged-chr11-104441222-2	chr11	104440722	104441722	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1069.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	8.43256148563939	8.65224563323388	8.2660682269071	8.29640028395078	8.85982588840753	8.49918491070403	0.158976691470457	0.526841264830516	0.849687525994762
Merged-chr1-176824052-4	chr1	176823555	176824555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	9395.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	8.32463298043822	8.29123740553643	7.77011415516549	8.38795170070295	8.90250896903393	8.2270310500935	0.539797217083297	0.0577700670486094	0.310585497123518
Merged-chr9-47616580-3	chr9	47616086	47617086	+	835.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	86234.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.84320118560684	4.85243565733453	4.61457375116544	4.59725371102068	4.31346276704335	4.5556626962677	-0.710479845855352	0.0939980186692524	0.408384875596865
Merged-chr11-117192908-2	chr11	117192408	117193408	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2B2|LTR|ERVL	-6753.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	2.97152491869142	2.83482984318316	2.85878981377336	3.09417359252028	2.81048561828037	2.9931038896951	0.372163963340505	0.595570841073856	0.879549293510723
Merged-chr7-25788774-4	chr7	25788265	25789265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-32.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	6.24867517242306	6.33459993855571	6.50445638941697	6.74144560618828	6.57486516918526	6.37940972700953	0.355626366101394	0.201010015290847	0.590427892979412
Merged-chr12-86833936-4	chr12	86833450	86834450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50864.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	6.15416250289074	6.22086293809076	6.18392422690188	5.8791729826291	5.69275818234992	5.96119785266838	-0.605042202228869	0.0396677525530421	0.247606219779753
Merged-chr1-170644502-4	chr1	170644027	170645027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177068)	promoter-TSS (NM_177068)	-5.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	4.11153768058847	4.09067725192592	4.26420471205627	3.834156779553	4.02655643275452	3.91264044017979	-0.64857089304318	0.191551808667801	0.578163985386394
Merged-chr2-164877971-3	chr2	164877484	164878484	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1384.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	4.44297357143604	4.59113801199411	4.72074230180389	5.34576198605749	5.47486158414178	5.53844527614971	1.88754796870937	7.54591025404729e-07	4.24243311093761e-05
Merged-chr2-143844629-1	chr2	143844129	143845129	+	583.5	f0_balb.idr	intron (NM_001291061, intron 4 of 7)	MLT1A1|LTR|ERVL-MaLR	18544.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	2.50626439028495	2.40189129100152	2.586350504396	2.31238474288257	2.41606708616415	2.53632421560438	-0.463699531442897	0.568172785775777	1
Merged-chr9-21316981-4	chr9	21316478	21317478	+	998.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-3741.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	4.3725605564391	4.30576210269364	4.35742394784403	4.31920996552375	4.35104730038309	4.46676215763371	0.0828505542796098	0.850524387925503	0.964967504399978
Merged-chr2-150833264-2	chr2	150832777	150833777	+	546.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	9293.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	3.72153767660599	3.98425238454463	4.36146810281049	3.71632563742464	3.82401789499333	4.38861797330667	-0.112212372366423	0.848189521073465	0.964318271116593
Merged-chr15-99971913-2	chr15	99971413	99972413	+	894.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-867.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	6.58547510272988	6.81544406833266	6.58194669267285	6.84001144424682	7.29726091970842	6.86770924868656	0.555845332735495	0.0467772742446715	0.273714539580438
Merged-chr6-148533147-1	chr6	148532647	148533647	+	545.0	f1_balb.idr	Intergenic	B4A|SINE|B4	81162.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	3.56366013724368	3.61319841070213	3.78605805577353	3.94647866185998	3.62617447239326	3.95180165672374	0.631909846411521	0.250706813301656	0.648153521953385
Merged-chr11-20204137-3	chr11	20203644	20204644	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	2732.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	7.04559760445972	7.00956596103424	6.79095934338169	6.98822088449655	7.2272912588837	6.83402510554276	0.117725285808836	0.653054329914258	0.903111979316685
Merged-chr7-35051696-4	chr7	35051210	35052210	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	4856.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.54944159547286	6.35953850874629	6.05495666736886	6.20432417276859	6.4509303927586	6.20691969409554	-0.0794352381430853	0.791657429400615	0.949797147757395
Merged-chr5-97024984-1	chr5	97024484	97025484	+	583.0	f1_c57bl6.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	27295.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	3.29609786385486	3.10029150931523	3.08511895235749	3.19418605948799	3.11608811865121	3.43884461112284	0.34499731019173	0.595710855968117	0.879596630230779
Merged-chr11-79088212-4	chr11	79087709	79088709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28373.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	7.18713000304865	6.98602254458449	6.90617675013243	7.05452993682584	7.04135357084497	6.89110610033106	-0.0534948293911644	0.829795014038228	0.960134151531511
Merged-chr5-121220896-2	chr5	121220396	121221396	+	932.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 1 of 75)	CpG	677.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	4.39644869857932	4.52938702888379	4.59445304662902	4.77585595564856	4.33372755434782	4.21334306196398	-0.0933770508738545	0.841031325964711	0.962832831784718
Merged-chr11-106153088-2	chr11	106152588	106153588	+	824.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 15 of 15)	B4A|SINE|B4	6839.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.10726445213249	4.78719729022988	5.20665930666887	5.02166369920811	4.84354375651843	4.93628192286234	-0.226164457006978	0.563107860227735	0.865794723268218
Merged-chr2-27762711-4	chr2	27762212	27763212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	52129.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	7.90258473176541	8.03574749642096	7.83116650534794	7.81396912903344	8.04166362768335	7.82055272323644	-0.0397449137557397	0.85840887605376	0.96690833694794
Merged-chr2-69015393-4	chr2	69014887	69015887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-120413.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	5.66128710614569	5.75608891197875	5.46098712993505	5.50074143801847	5.59499667863969	5.39987658722583	-0.248366271472478	0.45185043940335	0.809246047392897
Merged-chr3-89350054-4	chr3	89349566	89350566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009614)	promoter-TSS (NM_009614)	-38.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	4.65516671891069	4.52450519343805	4.30989816449176	3.9923347152058	3.94381849777733	3.93001840127957	-1.54948688543466	0.00131006938700501	0.0222556663033713
Merged-chr9-118868949-4	chr9	118868439	118869439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-57597.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	6.19735830606829	6.41319776897952	5.98865661112805	5.81973334464015	6.17547722347724	6.02623105513323	-0.343386555614136	0.270654777041813	0.667629387731657
Merged-chr4-147404290-1	chr4	147403790	147404790	+	1000.0	f1_balb.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-148987.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	4.04914540760745	4.30962788156396	4.27852380461329	4.11357371455547	4.16698842048458	4.54782479391847	0.174478167746928	0.718940238759341	0.927624546615504
Merged-chr17-74017847-4	chr17	74017350	74018350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	30066.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	6.38701075377282	7.04014600042986	6.38974347440787	6.53959097399939	6.38087917651168	6.221354210261	-0.423730233499438	0.189532004460359	0.575424009078179
Merged-chr3-8983266-3	chr3	8982773	8983773	+	870.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19127.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	8.60163335266897	8.68248834258623	8.29898083912662	8.69049900196321	8.98257587254062	8.53162526130574	0.291433487661168	0.22093553828072	0.61561513090473
Merged-chr11-114764585-2	chr11	114764085	114765085	+	734.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-804.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	3.05415540030422	3.07515456014075	3.00665804965197	2.91749340642785	2.80827915817206	2.89664327054072	-0.847855231065252	0.216393512061581	0.609896749639353
Merged-chr13-119600173-4	chr13	119599590	119600590	+	936.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-23729.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.39411582596663	2.85359546386385	2.9500656645983	3.14775517297271	2.80556953271652	3.08663705242096	-0.31464090438058	0.671521383685847	0.910546279207362
Merged-chr4-134119929-1	chr4	134119429	134120429	+	600.0	f0_c57.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	8824.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	2.83539135588108	2.72647654166266	2.85998239915884	3.40564495196984	3.17417881585682	3.06339042385614	2.02569070082037	0.00489949514453457	0.06035098658923
Merged-chr6-122928869-4	chr6	122928373	122929373	+	777.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 3 of 5)	intron (NM_199311, intron 3 of 5)	7025.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	4.59389411384309	4.7197815832243	4.71427221750658	5.16015583804042	4.77136820097926	4.78103023254312	0.550363279013109	0.178262907156368	0.559389924835031
Merged-chr5-118575123-4	chr5	118574608	118575608	+	881.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347445, intron 1 of 30)	intron (NM_001347445, intron 1 of 30)	14389.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.05762431950032	2.07659510101759	2.27027437483916	2.32570197660736	2.23628157358203	2.47219304043503	1.521698829082	0.0921126953674625	1
Merged-chr11-35290418-3	chr11	35289905	35290905	+	934.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	168949.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	2.17633704446653	2.07370367093615	2.34776354025292	2.35286431683774	2.53427038303677	2.4867048190912	1.85490663767434	0.0420081111570148	1
Merged-chr2-119547631-4	chr2	119547139	119548139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	-12.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	7.39252791110534	7.67234852911441	7.68098503753675	7.2538966401971	7.43403786700631	7.22981573855934	-0.401234237974438	0.095643099774611	0.412335394241042
Merged-chr6-5298332-4	chr6	5297818	5298818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183308)	promoter-TSS (NM_183308)	55.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	6.90693704030282	7.00513641121803	6.87206372583312	7.21842633463476	6.83781324786577	7.14404086351442	0.212059129345121	0.410321846912883	0.783164588552063
Merged-chr17-73948941-4	chr17	73948516	73949516	+	868.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1180.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.53638169281197	7.80473011237003	7.57841615571186	7.90379037286419	8.19886265499419	7.71107995956162	0.449864103269027	0.0702533144274933	0.347189985560543
Merged-chr11-83064142-4	chr11	83063641	83064641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-971.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	7.79204298031447	7.72731225135757	7.40022725383701	7.69074657532358	7.77951042224582	7.76886921407194	0.126270789744049	0.589881219530929	0.877024090368969
Merged-chr6-88518920-4	chr6	88518423	88519423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016906)	promoter-TSS (NM_016906)	-123.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	7.8286359025983	8.09007352893126	7.81729785312054	7.60513257978086	7.65699058892416	7.57642985264044	-0.441730022844822	0.0499708504474256	0.284578367259557
Merged-chr6-39243566-3	chr6	39243070	39244070	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36797.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.34003910976551	4.48567808309162	4.23436755107626	4.02983590723124	3.69083198318097	3.90904533663969	-1.4177443259188	0.00499274044913898	0.0611654810500524
Merged-chr11-115190561-4	chr11	115190050	115191050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	RMER17C2|LTR|ERVK	3063.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	7.36413820020249	7.33558361686251	7.22942815606911	7.81803965202752	8.08534791361868	7.84227473947263	0.886467179895523	0.000111263268392897	0.0031004668574803
Merged-chr17-26538241-4	chr17	26537746	26538746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23266.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	7.89510590835787	7.89396714744617	7.41707537279658	7.61520201510204	7.79377869004914	7.26090407838864	-0.255794175821233	0.34870884371263	0.73663625549368
Merged-chr8-90870539-4	chr8	90870047	90871047	+	953.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	41712.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.94481405871948	5.56682112068415	5.73456372951292	5.78230352861151	5.40004102273329	5.29156391052222	-0.455192802789506	0.198111705947715	0.586385843358618
Merged-chr3-90212872-2	chr3	90212372	90213372	+	825.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293741)	promoter-TSS (NM_001293741)	775.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	6.18203698340621	6.31435998221361	6.05564062871162	5.9208440245069	6.2484820331217	6.18204740682058	-0.113834171909606	0.700918677758186	0.921065601246484
Merged-chr7-133636907-4	chr7	133636408	133637408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-767.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	7.05743186578753	7.34574155890258	7.06964992050649	6.98493374484134	7.55439167404353	7.16604366355978	0.147024271321927	0.596314029859482	0.879909519357116
Merged-chr11-118488788-2	chr11	118488288	118489288	+	888.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285436)	TTS (NM_001285436)	11956.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	3.53029167666577	3.38157734950497	4.09645181654536	3.54607113477977	3.3119762196798	3.56527734863017	-0.774292467753299	0.221741472740635	0.616585509091023
Merged-chr14-103100651-2	chr14	103100151	103101151	+	681.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1085.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	3.22653142741542	3.72586208523183	3.63423095356082	3.40475621014348	3.57431183520272	3.70374897852209	0.0593128159109073	0.923426836590948	0.982699256056545
Merged-chr13-98264708-2	chr13	98264208	98265208	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271391, intron 1 of 7)	B1_Mur2|SINE|Alu	1632.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	3.55614143913109	3.59287800463614	3.40261516478435	3.7150174025605	3.67248115977749	3.6978216255401	0.587710943738363	0.293790519430166	0.690424156263798
Merged-chr2-91205620-4	chr2	91205161	91206161	+	948.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	2749.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	7.70833009996446	7.67123088146594	7.70153639449392	7.58639179801697	7.80733643009401	7.96616201747592	0.143263367305729	0.531668540044431	0.851792887243639
Merged-chr7-97189462-1	chr7	97188962	97189962	+	608.0	f1_balb.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	107711.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	2.27770722882174	2.38043613203468	2.55926187156148	2.16453394260746	2.24191108521324	2.51162573495703	-0.629567458615269	0.472444433514987	1
Merged-chr6-113493901-2	chr6	113493401	113494401	+	767.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133930)	TTS (NM_133930)	7917.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	5.33712627082413	5.64928718348895	5.42810416209605	5.66946158978957	5.83122440553566	5.79487850136736	0.528002118087018	0.107451469685722	0.437717707314675
Merged-chr12-34997939-1	chr12	34997439	34998439	+	848.0	f0_balb.idr	Intergenic	Intergenic	13178.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	2.35648113840657	2.41660289179092	2.73483733172998	2.1644749455715	2.10625691013323	2.38579779247729	-2.04266723540003	0.0304617455705993	1
Merged-chr10-128626378-4	chr10	128625866	128626866	+	980.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013765, intron 1 of 3)	CpG	140.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	6.86093678708067	7.06172258886737	6.79379560254285	7.09470492316854	7.09484866161451	6.78936747982699	0.141348220368506	0.585483102849317	0.875038222902718
Merged-chr10-128547847-4	chr10	128547346	128548346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	-102.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	8.02909553709333	7.7800536713345	7.79098749116323	7.44927462767606	7.78773726500927	7.39249153906285	-0.445782770899041	0.0702780612950868	0.347250411178241
Merged-chr2-150915355-4	chr2	150914904	150915904	+	886.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027014, intron 2 of 6)	intron (NM_027014, intron 2 of 6)	5810.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	6.29716770864112	6.42309643717971	6.00642408740472	6.88104846236074	6.86940154774826	6.38463929049693	0.76448239287233	0.0119164684050578	0.113696308112378
Merged-chr1-170215365-4	chr1	170214879	170215879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360809)	promoter-TSS (NM_001360809)	28.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	6.99564621326887	6.65882701039948	6.60340046264714	6.81271164116076	6.24100821329884	6.19005588498521	-0.503749616469587	0.113045739194752	0.449191427529329
Merged-chr9-116086465-3	chr9	116085929	116086929	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	88934.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.27093893487542	3.96590888352047	4.41211247253992	3.60904666762855	3.6467583346939	3.91421778853181	-1.55134365690843	0.00425839810735275	0.0545547020348895
Merged-chr16-93839296-1	chr16	93838796	93839796	+	595.0	f0_c57.idr	intron (NM_001045529, intron 1 of 16)	RMER6D|LTR|ERVK	7175.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	4.01801207479323	3.87192220873978	4.04647621450229	4.33111643994516	4.1860378352561	4.20967717309458	0.7640050840524	0.110388825433069	0.443967005975873
Merged-chr2-150878897-3	chr2	150878372	150879372	+	776.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	25859.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.07036153636514	4.17713105737046	3.79407435819265	3.90318091308443	3.79528481761844	4.11446802917267	-0.288454541039315	0.581335783282862	0.873278833301446
Merged-chr7-30282050-2	chr7	30281543	30282543	+	850.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_144498, intron 2 of 2)	RLTR19|LTR|ERVK	-1622.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	4.46145820634689	4.64291180353698	4.37327005927388	3.62170555077176	3.50622738060611	3.81238799589667	-2.75368012454	5.38181485145768e-07	3.13373023205102e-05
Merged-chr14-46742577-3	chr14	46742073	46743073	+	711.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-17968.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	4.977580231793	4.86883740267127	4.93885168549004	4.19924688969868	4.18568055403718	4.59740166500587	-1.47890590068428	0.000710371125453541	0.0138168678370122
Merged-chr19-11244420-4	chr19	11243919	11244919	+	958.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	21732.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	5.30006099879196	5.29343700376069	5.37700137304351	5.21061100529062	5.39870190272804	5.49694511142391	0.0988693896894119	0.772887716179566	0.943931380748419
Merged-chr6-100370506-4	chr6	100370013	100371013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-83155.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	3.88839587470486	3.68900864466578	3.90763552023458	4.13704678008976	4.16999614680867	4.12223023904588	0.956680019519972	0.0552731561313452	0.302176069159414
Merged-chr13-49252317-4	chr13	49251806	49252806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-3600.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	4.45360932731659	4.72449593438422	4.852523988393	4.43081790369769	4.57308812221814	4.88219707475004	-0.112273744103617	0.798254366468044	0.951930937621884
Merged-chr7-141575765-3	chr7	141575273	141576273	+	598.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357068, intron 1 of 21)	(T)n|Simple_repeat|Simple_repeat	13593.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	4.1772118856633	4.15934689344796	4.38668135616556	3.98604099220449	4.09651284914121	4.49174546983815	-0.108927768708581	0.824851790410583	0.958596193929081
Merged-chr17-5731391-2	chr17	5730891	5731891	+	787.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67266.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.3221040606967	5.19527885845226	4.8370627391512	4.84687977881278	4.67148506953805	4.69765059170544	-0.88695308824611	0.0267282198967657	0.194575828623804
Merged-chr9-63612165-4	chr9	63611678	63612678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9532.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	6.93937466316974	6.83212226388769	6.98704755723633	7.19918747576489	7.48851664648517	6.80842274797082	0.439206907561196	0.117503326189158	0.457641878705313
Merged-chr11-94544135-4	chr11	94543646	94544646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001013381, exon 5 of 9)	exon (NM_001013381, exon 5 of 9)	5061.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	3.55582494882157	3.48974630534683	3.16017721790072	3.34422482121672	3.7223165248284	3.47763290816015	0.402838648755356	0.53076066705192	0.851361637507349
Merged-chr7-143004917-2	chr7	143004417	143005417	+	712.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128080)	promoter-TSS (NM_001128080)	-129.0	NM_001128080	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	2.89365196390604	3.11755509940382	3.36113474813009	3.77773325598617	3.16968653449016	3.64453489823563	1.65599597962533	0.0191792212562418	0.1572042661743
Merged-chr5-65938162-4	chr5	65937667	65938667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28957.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.42175686320659	4.80966516204489	4.29829894849487	4.43674612695715	4.76696223108642	4.59259418590312	0.171057149782211	0.710382369533939	0.924293540432205
Merged-chr4-148675243-4	chr4	148674722	148675722	+	830.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31905.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.21323010249047	4.05425471994456	4.3936507136013	5.10420921185029	5.01623999796322	5.04392318287557	2.05284469865802	1.64541721993577e-06	8.35889238293474e-05
Merged-chr17-45555610-4	chr17	45555106	45556106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-94.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	7.21140614556855	7.08895824082833	7.03487888682327	6.93482702807458	7.2770896490142	7.05283195458331	-0.0207949246523676	0.934010770369853	0.985696081600636
Merged-chr8-117346046-3	chr8	117345540	117346540	+	718.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3130.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.76925495598164	3.60990510189442	3.45518606776807	3.19363990188723	3.07959632616042	3.17024859283667	-1.96757601804657	0.00222588894886885	0.033510361436128
Merged-chr6-83028739-4	chr6	83028236	83029236	+	825.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4735.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.30963249155222	4.96728454810994	4.93965386461646	4.97070304211252	4.8920367356185	4.77032148245857	-0.443556831594028	0.257203538564784	0.65447682070026
Merged-chr1-173634380-4	chr1	173633808	173634808	+	726.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175026, intron 1 of 6)	intron (NM_175026, intron 1 of 6)	3449.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	4.64932628822896	4.83218721069455	4.62808084056492	5.03835493773791	5.2405657726423	4.73923897436411	0.717416404496001	0.0803964634532206	0.37523159810498
Merged-chr1-33768210-4	chr1	33767697	33768697	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-10447.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	5.21703177310668	5.4769915367346	5.34418834847143	5.76159091083058	5.82455280417092	5.47012156309489	0.674602228847719	0.047572258897289	0.276280775230824
Merged-chr14-69088659-3	chr14	69088159	69089159	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	59370.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	5.67981426747522	5.97164663778372	5.93302806960485	5.52746957290147	5.86657925248271	5.75065323985648	-0.24834022015058	0.443386947132684	0.803776494488375
Merged-chr5-34487595-4	chr5	34487071	34488071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26408.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	6.92651873647669	6.84352367660023	6.72552509035645	6.71421237432923	6.87708388096454	7.02703904843971	0.0547339505745849	0.830936385631579	0.960370002015736
Merged-chr3-116053532-4	chr3	116053043	116054043	+	930.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45246.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	3.64121378353435	3.67027553940354	3.85791540753	3.64228193125888	3.47455571127138	3.62646865217973	-0.492183498683824	0.37480041982273	0.758128885281656
Merged-chr4-43924894-3	chr4	43924390	43925390	+	611.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016678, intron 11 of 20)	intron (NM_016678, intron 11 of 20)	-32812.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	4.07652446442055	3.43628776970679	3.51652494434276	3.60771149786126	3.34039545801083	3.64468135278244	-0.618300297861382	0.325263075355226	0.718077478450679
Merged-chr5-92099576-4	chr5	92099116	92100116	+	794.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15872.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	3.78942159692011	3.58688984511321	3.89999380604377	3.47028451921352	4.03248433977623	4.23148855247361	0.572285761683937	0.33711800529773	0.727031888346252
Merged-chr19-53800723-1	chr19	53800223	53801223	+	572.5	f0_c57.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-91508.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	2.31232931496536	2.24539209542275	2.49153041899447	2.54631546214993	2.27056161434032	2.23564665131351	0.0562981100391722	0.948105905714039	1
Merged-chr8-105504809-1	chr8	105504309	105505309	+	671.166687	f0_balb.idr	Intergenic	Intergenic	-7907.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	3.62946360010285	3.8176083998189	4.18548734669361	3.78646396236865	3.46754035528737	3.94886104251602	-0.471677278630992	0.420284132627932	0.789521469804967
Merged-chr12-41196629-4	chr12	41196157	41197157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172567.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	6.25956511493041	6.21580854380859	6.13718056156885	6.41528820573622	6.69529372119344	5.98399408036	0.340445242677131	0.28153796636763	0.67967073158435
Merged-chr15-98833489-2	chr15	98832989	98833989	+	689.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033276, exon 55 of 55)	3' UTR (NM_001033276, exon 55 of 55)	-1981.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	3.46641496364775	3.47771253110617	3.65448499540939	3.32586876305403	3.08565460562506	3.62488330305852	-0.67001377270371	0.29249829009228	0.6896822727195
Merged-chr2-129489668-4	chr2	129489177	129490177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46925.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	8.09511777276466	8.19618705915173	7.9468389563232	8.17922723819252	8.37373441576852	7.93941333220835	0.136715594663633	0.558082996279882	0.864488862508624
Merged-chr10-98744347-4	chr10	98743853	98744853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-170289.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.69760237277074	6.6507532195047	6.09196256138205	6.29399861127763	6.6446896865656	6.61151180079665	0.0100857286038905	0.974166814695945	0.994260005145451
Merged-chr5-141081555-2	chr5	141081055	141082055	+	706.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-80959.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.27003155188798	6.76876802203464	6.88434828515913	6.86485717937323	7.18868404924916	6.74106025286804	-0.0631637069392972	0.827549259105015	0.959467071709035
Merged-chr7-75681284-4	chr7	75680776	75681776	+	919.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-167062.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.91911128013163	5.07813501107108	4.77277305117048	4.89790036273966	4.76746380605212	4.87784793535807	-0.207125387364994	0.594768851735961	0.87924603206665
Merged-chr1-127240138-4	chr1	127239631	127240631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	35145.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.56074925157624	5.56569454426015	5.19726669940721	5.34793197335723	5.45486940166121	5.08028738122646	-0.286145936803687	0.431854373324895	0.797114750192572
Merged-chr9-116178342-4	chr9	116177836	116178836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2973.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.67218259229813	7.71630230725787	6.88424307989403	7.31777590238735	7.51463420712165	7.04873718235965	-0.254768442411974	0.415503902124949	0.786473510786138
Merged-chr10-18139101-1	chr10	18138601	18139601	+	696.5	f0_c57.idr	intron (NM_001195036, intron 17 of 20)	intron (NM_001195036, intron 17 of 20)	71789.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	2.36997183976951	2.3963138892853	2.50580505410327	3.3534670211445	2.77147928599189	3.27407726266758	5.67449327201044	1.84287592042844e-05	0.000680914829427218
Merged-chr3-9033970-4	chr3	9033464	9034464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28000.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	7.28240398613351	7.32170357691016	7.15173768909751	7.6040002818962	8.11939858263641	7.52998625745433	0.775698543280016	0.00366067316310946	0.0487355668089619
Merged-chr1-59593638-4	chr1	59593093	59594093	+	891.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	69299.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	4.1964487086267	4.55179063921352	4.29435891622791	4.46101567259937	4.4199466848948	4.49400617024125	0.2404554607821	0.593679807509046	0.878589727861081
Merged-chr11-70084800-4	chr11	70084303	70085303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7841.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	4.78577678645016	4.55152822684594	4.89497829881971	4.44008707906578	4.55131875153734	4.78279873113286	-0.363197910065225	0.393665411340057	0.771846165930398
Merged-chr9-44191359-4	chr9	44190861	44191861	+	910.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	42685.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	4.91757477703396	4.87276735247031	4.71614353659718	4.66377280437562	4.58717331752937	5.000664829873	-0.214686081824845	0.601132743135103	0.881884913086671
Merged-chr19-42714027-3	chr19	42713510	42714510	+	935.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38765.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	3.00959376529199	3.47107031388824	3.35835271372784	3.49443554605452	3.56651547668023	3.48593348906149	0.839668896993054	0.192854214960859	0.579895624649198
Merged-chr5-34781934-3	chr5	34781453	34782453	+	737.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	20213.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	3.99856211251747	4.29249081845714	4.32037198623981	4.71584777666781	4.69689776278708	4.64235853809528	1.22318328716279	0.00617672949728917	0.0712480490962076
Merged-chr3-109476845-4	chr3	109476371	109477371	+	666.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-97136.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.97669346793592	4.06809030093057	3.59025792122711	3.1684012737784	3.22061891710802	3.30433257054799	-2.62067189598747	6.23082040084661e-05	0.00190468076382676
Merged-chr11-79253367-4	chr11	79252873	79253873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	1322.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	7.67522160586201	7.77885557714634	7.57250723444665	7.64002192711433	7.92639908405878	7.32670493819806	-0.0220744228591455	0.931826914919578	0.984952412812859
Merged-chr16-32162414-2	chr16	32161914	32162914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146069, exon 2 of 4)	5' UTR (NM_146069, exon 2 of 4)	3180.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	5.16171004071231	5.1973465895412	5.32519116857925	5.61675803035799	5.20583165495763	5.32663745154912	0.334626442826357	0.350595653395008	0.738596934645462
Merged-chr6-31321695-3	chr6	31321194	31322194	+	817.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	77079.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	3.50787867172237	3.15309276850892	3.25817002376541	3.23060944077071	3.08893080888987	2.95961919852415	-0.911422968683821	0.177262573046117	0.558213078682258
Merged-chr16-35754970-4	chr16	35754476	35755476	+	967.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	14380.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	5.73596749733716	5.66849752433361	5.55995482164744	5.82912477339255	6.04274324767875	5.70846002395345	0.390888777527417	0.217855152863648	0.611901565759233
Merged-chr4-147398127-2	chr4	147397627	147398627	+	706.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	MLT1B|LTR|ERVL-MaLR	-155150.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	2.34842874734856	2.35191209382406	2.57177356330303	2.44742600111309	2.34218793652918	2.58404936068523	0.208200181074782	0.798714804855598	1
Merged-chr9-67845230-4	chr9	67844728	67845728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	4832.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	5.58389307983426	5.62089797035482	5.89530115628059	5.36933774624733	5.65540892248215	5.61326564369621	-0.269252211847052	0.420226954997261	0.789521469804967
Merged-chr14-122010650-3	chr14	122010216	122011216	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-23958.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	4.63267018810971	4.30003285226253	4.16282627713097	4.01110322723227	3.75573011249655	3.98274497156436	-1.35613843303285	0.00767327304282	0.0835281793853729
Merged-chr15-84925730-2	chr15	84925230	84926230	+	647.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	(TC)n|Simple_repeat|Simple_repeat	2302.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	3.10614186077394	2.78110834844106	3.06181889335833	3.09659608967654	3.0993856859127	3.01487647067056	0.378718065705852	0.583115854980257	0.873907285988058
Merged-chr15-73184545-4	chr15	73184046	73185046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	CpG	401.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	7.84360572101228	7.7122224835654	7.59951776507363	7.75326391810135	7.34229288407638	7.30561023343119	-0.347317099157952	0.167252387492513	0.542880306552643
Merged-chr2-117374418-4	chr2	117373909	117374909	+	827.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31532.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.48679927130383	5.11077636488677	5.31369064537862	5.9825114838037	5.75017671454262	5.12983114040195	0.689953460053608	0.0817621625415308	0.378285105145633
Merged-chr9-47471984-3	chr9	47471468	47472468	+	909.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58202.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.57137178165376	3.77542512048509	3.71729402519866	3.47984972211448	3.35959640504825	3.63358169249823	-0.726869611258546	0.204217871198817	0.594665288773796
Merged-chr5-138265176-4	chr5	138264681	138265681	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347507, exon 4 of 4)	3' UTR (NM_001347507, exon 4 of 4)	-1129.0	NM_153161	231807.0	Mm.164493	NM_153161	ENSMUSG00000036948	BC037034	-	cDNA sequence BC037034	protein-coding	4.71923031560456	4.20453277933399	4.73457758830788	4.53128308014866	4.26824252746961	4.65072277416528	-0.210958019999069	0.655716540271543	0.904343663112686
Merged-chr7-16256156-3	chr7	16255644	16256644	+	890.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	ID_B1|SINE|B4	3194.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	6.3729678190972	6.58909466219092	6.68001030728566	6.22491464945783	6.25158504067525	6.22214569865945	-0.514374788935801	0.0620407055914062	0.323491855548924
Merged-chr8-27177345-4	chr8	27176877	27177877	+	862.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2731.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	3.39590794016851	3.00904887091727	3.20389236699057	3.27200112050146	3.11457345436135	3.21801606898157	-0.0542760953560627	0.93392860761603	0.985658877773171
Merged-chr1-91049334-2	chr1	91048834	91049834	+	657.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-4110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	2.58322688849232	2.60933929543716	2.74378989488756	2.51197992706436	2.4678018796943	2.931204847949	0.0171625206902914	0.982824966247284	0.996125312636321
Merged-chr5-137787772-4	chr5	137787271	137788271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005426)	promoter-TSS (NM_001005426)	-31.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	7.32964976456324	7.35472124465035	7.26137764852521	7.25326883710929	7.66236086360423	7.27167740724076	0.150898366423871	0.546991350166602	0.859168905101902
Merged-chr3-154177922-3	chr3	154177425	154178425	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 2 of 21)	intron (NM_001081263, intron 2 of 21)	152635.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	2.42833967336453	2.38854600657773	2.54156976988099	2.36790509383642	2.14944772529017	2.5538219291475	-0.567065905699196	0.513897707403951	1
Merged-chr16-92412445-6	chr16	92411852	92412852	+	934.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-12274.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.0557189270809	7.25613904624382	7.21911174692751	6.86816571775789	6.8027258980221	6.87704417753635	-0.508298136665998	0.0359946265186003	0.233279265354067
Merged-chr13-101678596-5	chr13	101678016	101679016	+	808.608337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14114.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.33250078171265	2.11289440055814	2.20995302301947	2.35561080511338	2.31113112085116	2.66692933474285	1.49932714720094	0.0950836422501107	1
Merged-chr2-173738302-4	chr2	173737792	173738792	+	941.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	721.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	7.63429721486674	8.01765401225204	7.52208016821362	8.10329755743195	8.47879938005244	7.80941010453277	0.594806572669401	0.0336507388191976	0.224162250874053
Merged-chr6-54816656-4	chr6	54816157	54817157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199143)	promoter-TSS (NM_199143)	-259.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	7.12000957420138	6.62619276062317	6.88808996407982	6.99089329121987	6.55699549527128	6.91823909443702	-0.100092727553069	0.730173620513595	0.930759951830614
Merged-chr2-25333159-4	chr2	25332608	25333608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	365.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	6.92462328533778	6.76604967494869	6.52965647220331	6.54088903342971	6.85727530960061	6.05027871416666	-0.337374434214997	0.301486497322199	0.698211950745639
Merged-chr17-57078558-4	chr17	57078071	57079071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153551)	promoter-TSS (NM_153551)	-61.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	7.92838335100189	7.96912540462555	7.70723433382131	7.96639893605698	8.13140885308306	7.83394663893325	0.156883422978282	0.491390872001729	0.830509661958074
Merged-chr19-5637398-4	chr19	5636863	5637863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-127.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	9.65812739281671	9.63930898553037	9.13850097108828	9.33087536757812	9.52077825496721	9.038417524903	-0.254835781734551	0.304577821577936	0.700973852740454
Merged-chr17-80061402-4	chr17	80060965	80061965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152119, intron 1 of 13)	CpG	803.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	7.50642637324896	7.74963627653104	7.42286334727045	7.14617431758635	7.15027874122318	7.14416126995653	-0.630324628307205	0.00801421974982111	0.0861893753319264
Merged-chr19-5608873-2	chr19	5608373	5609373	+	738.900024	f1_balb.idr|f1_c57bl6.idr	exon (NM_178637, exon 5 of 14)	exon (NM_178637, exon 5 of 14)	834.0	NR_037603	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	3.14745424098479	3.03805542603073	3.20129757145314	3.34391615487999	3.24794509867166	3.21537569870571	0.609242934865668	0.334009523965925	0.724748007849347
Merged-chr6-53571045-2	chr6	53570560	53571560	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-2314.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.19507235673549	5.89949693592474	6.12254545521111	5.79297063897681	5.60125670635851	6.45711254312116	-0.144021554091159	0.693212729896266	0.91884092896984
Merged-chr2-126675330-9	chr2	126674859	126675859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355109)	promoter-TSS (NM_001355109)	-7.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	9.06277254745417	9.15733872252783	8.83907213589324	9.04274556860841	8.83200894410903	8.85454734113419	-0.160030064772312	0.447605859026733	0.806548958484392
Merged-chr3-138529307-2	chr3	138528807	138529807	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	2039.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	3.97904096096918	4.27163149445597	4.06755602660781	4.22423688737888	4.40663692322125	4.32350675212081	0.56456098707661	0.234419732777021	0.630514517872716
Merged-chr2-174464119-4	chr2	174463617	174464617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025983)	promoter-TSS (NM_025983)	-16.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	6.91962366873761	7.1991164472258	6.84354142805358	7.01885073124542	7.04539452865583	6.97453289450745	0.0159965865971805	0.949659251172741	0.988243921877722
Merged-chr2-160018553-4	chr2	160018056	160019056	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	1903.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	7.26095830733172	6.96890292622408	7.46161978064091	7.04684761808222	7.20944322312065	6.97389736376834	-0.229640458839598	0.384203628361234	0.765357842816299
Merged-chr9-103108599-1	chr9	103108099	103109099	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-3475.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	3.78944803853332	3.85883019595908	4.48815351000639	5.93959698233846	6.23207488620704	6.28603430538449	5.16449867819108	2.60545503499856e-06	0.000125823971301312
Merged-chr3-69202532-4	chr3	69202027	69203027	+	944.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19892.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	3.87836848353091	3.89695470387852	3.98279625739996	4.50292237630509	4.64639360857848	4.59318728008894	1.85047386940605	7.81317241647732e-05	0.0023013042493106
Merged-chr18-68197521-1	chr18	68197021	68198021	+	622.0	f0_balb.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-30425.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.42384035553797	3.45154101258783	3.22885760020067	3.18618923473176	3.08722601964632	3.46829616593207	-0.510897496737828	0.424963335007595	0.792848465017231
Merged-chr10-121586148-4	chr10	121585667	121586667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	627.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	8.75872428346607	8.51038062563534	8.03794584087807	8.65889654211725	8.57982331985995	8.24493732646114	0.0463201459474656	0.863119280980803	0.968190422117753
Merged-chr9-96391495-4	chr9	96390972	96391972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27041.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	7.15127316192991	6.79886577925168	7.04523174069842	7.32786352100852	7.51394320237288	7.15492393761168	0.514388640366575	0.0465565472823277	0.273008865361788
Merged-chr6-94509457-4	chr6	94508938	94509938	+	961.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9124.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	6.11877159617253	6.60568819748844	6.32963741633915	5.5627444238686	5.75261606513977	5.43041742442629	-1.33778394955169	5.34856287496186e-05	0.0016730948109016
Merged-chr7-127007721-2	chr7	127007221	127008221	+	642.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6873.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	4.93744266671885	4.90480401818015	5.10139079085377	4.66590295250379	4.32032837458244	4.86370592079773	-0.82316720821791	0.0531874992934979	0.295652711685041
Merged-chr9-90213938-2	chr9	90213438	90214438	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 10 of 12)	intron (NM_194334, intron 10 of 12)	50960.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	2.39101298439269	2.40693395305367	2.81596604579906	2.88673692505262	2.59498937354059	2.83020364814175	1.26301761077649	0.129486380236774	0.481317968583494
Merged-chr6-72142751-3	chr6	72142242	72143242	+	875.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-19545.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.79711027092492	4.52728161787295	4.65192416763123	4.60406161244951	4.65035805946612	4.90344963248526	0.125721994307814	0.762834390204935	0.941663714620562
Merged-chr4-150078816-4	chr4	150078328	150079328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8675.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	4.72481211754115	4.73669449270934	4.73152651460986	5.21241101992965	4.99006381341604	4.91518456606666	0.701926400886978	0.0692903665077974	0.344435917102623
Merged-chr11-78349833-4	chr11	78349396	78350396	+	839.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011676)	TTS (NM_011676)	3186.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	3.50437764948036	3.36435292768523	3.43365230009217	3.45137629609803	3.64922549516822	3.55966860135565	0.45378486584768	0.43189502689263	0.797114750192572
Merged-chr11-4194295-2	chr11	4193795	4194795	+	753.299988	f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	Lx9|LINE|L1	7462.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	5.60680661028501	5.455409262286	4.838165861609	5.2845760467053	5.39698734777091	5.10771565900121	-0.156499361456488	0.700379106943067	0.920919335036368
Merged-chr16-8671003-4	chr16	8670505	8671505	+	937.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	1148.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	4.89469148953871	4.79352101117279	5.16054340844122	4.69489944378936	4.70211858616902	5.16259759081747	-0.199875864524451	0.631287180910151	0.895122791781359
Merged-chr14-25457786-4	chr14	25457305	25458305	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1380.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.18605817751497	5.03697590524863	4.97204631589494	4.90304039568585	4.55187711841735	4.45831553944427	-0.930696448659942	0.0245007728256751	0.184527543924581
Merged-chr3-10288708-4	chr3	10288180	10289180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029310, intron 1 of 5)	RMER17D2|LTR|ERVK	12503.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	5.02229645382969	4.69564528844204	4.68641532196254	4.95521509579479	4.82317261652124	4.28439212203892	-0.196347772792726	0.670474887617945	0.910029595108128
Merged-chr5-142932970-2	chr5	142932470	142933470	+	593.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-26216.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.96819215466814	4.04362928456392	4.15996922512279	4.18860308910866	4.10698416026766	4.76806190763633	0.875020392401994	0.0879184156993058	0.393468252059807
Merged-chr17-24169078-4	chr17	24168584	24169584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	-275.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	9.1538682025675	9.35374376861791	9.13757989596099	9.13435432477718	9.48195659895866	9.19232950468445	0.0836549536808154	0.695617462545139	0.919291538728398
Merged-chr2-155729459-4	chr2	155728940	155729940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145537)	promoter-TSS (NM_145537)	35.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	5.61160889120521	5.76197912656674	5.35402698445058	5.71496161358891	5.23767275829766	5.17758099439144	-0.36389995731655	0.328769015604343	0.720905796252831
Merged-chr11-109480622-3	chr11	109480116	109481116	+	986.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5276.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	5.28905574739542	5.09760137961081	4.98451232995573	5.58511067226522	5.15868694939356	4.97387286710496	0.274245525217681	0.48649342222956	0.827855940662378
Merged-chr2-165877272-2	chr2	165876772	165877772	+	562.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	1165.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.65775959785651	4.50038952304824	5.01877901459153	5.34296929676406	5.18274971503893	5.60205056127626	1.38515254015628	0.000643172724718965	0.0128154013597739
Merged-chr2-29889664-4	chr2	29889154	29890154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	-66.0	NM_001177661	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	7.42311324715247	7.35094059625534	7.46167885370803	7.47241950910927	7.29055302652351	7.28033792174869	-0.0870217390357203	0.704990162814956	0.922673631462744
Merged-chr3-59312778-4	chr3	59312271	59313271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	31485.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	6.83976222359174	7.3030858946103	6.32544014651675	5.49746927814984	5.81812416214882	5.422196248506	-2.15239493387834	7.80965677631838e-09	7.27688601392945e-07
Merged-chr11-32347801-4	chr11	32347292	32348292	+	988.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177364)	promoter-TSS (NM_177364)	-19.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	4.09475642091989	4.39541474863723	4.57893934144304	4.35805256370301	3.85711941685163	4.6803062230176	-0.0805822864686899	0.881011205083925	0.97262624933271
Merged-chr3-8098911-4	chr3	8098406	8099406	+	985.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-144019.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	3.68737980001175	3.86846986428588	3.88939987956389	3.6803643052809	3.77457109149598	3.65090827190386	-0.354443896092314	0.508235212924913	0.839777201102046
Merged-chr2-71376673-6	chr2	71376236	71377236	+	959.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9182.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	4.90763940211776	4.78968155682063	4.65618338419285	5.7543471070388	5.56018041137155	5.16963521214853	1.49626406295175	0.000132782905198393	0.00360358772855443
Merged-chr6-50299197-4	chr6	50298684	50299684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 21 of 21)	intron (NM_027881, intron 21 of 21)	-37415.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.59563460804203	4.34667762124886	4.27149280571691	4.41140683530348	4.29108454379059	4.29350449892419	-0.222695847644114	0.622611678464236	0.891225289534451
Merged-chr11-3195757-4	chr11	3195244	3196244	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2281.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.39048421746642	6.74100521677841	6.85129106771539	6.57201377509561	6.58412124474332	7.59502106369121	0.519809286868075	0.159624262460928	0.531877190382303
Merged-chr2-118927031-2	chr2	118926531	118927531	+	992.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028117, exon 1 of 1)	exon (NM_028117, exon 1 of 1)	534.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	4.86411308002624	5.12494123174131	5.46106683639232	5.30352499662474	5.35888475621164	5.32180475336397	0.342930099828916	0.363823291763561	0.74933829766087
Merged-chr1-24679169-4	chr1	24678692	24679692	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	274.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	8.94706203950284	9.22809809761943	8.59936266530264	8.7812953824655	9.08252359956252	8.47617941822914	-0.199276994064108	0.458582602225341	0.813129779571806
Merged-chr18-26908395-1	chr18	26907895	26908895	+	629.0	f0_balb.idr	Intergenic	Intergenic	-1154238.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.4993856108059	2.5204400372363	2.6117449383538	2.49065956714995	2.4702842023278	2.36331510395126	-0.592680864974381	0.45980021560671	1
Merged-chr18-9744627-1	chr18	9744127	9745127	+	735.0	f0_balb.idr	intron (NM_130449, intron 2 of 9)	PB1D10|SINE|Alu	36979.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.80989700124752	3.89466582471876	3.53410906305518	3.27851433955807	3.11631037501628	3.25956148177462	-2.33698113084322	0.00031600295203738	0.00727156350473626
Merged-chr7-129528503-4	chr7	129528014	129529014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63349.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	4.21122982223894	3.9969160496319	4.24784637258446	4.38902781701416	3.99086318182752	4.35848221699763	0.271754559149997	0.57963881023587	0.872572319921262
Merged-chr4-139238758-3	chr4	139238249	139239249	+	906.7000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	44638.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	5.07118283356752	5.11369404558235	4.98252032220616	4.48718065547503	4.13319150169099	4.40843028471246	-1.73059400711567	4.92525870003937e-05	0.00156181755302163
Merged-chr13-12410818-2	chr13	12410318	12411318	+	671.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144835, intron 15 of 44)	B2_Mm1t|SINE|B2	15443.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	5.72205656295204	5.94597136252043	5.84861002245581	5.59393152247353	5.98524906618049	5.73166837474103	-0.09262210054205	0.774100895048268	0.944282344384805
Merged-chr19-32255153-3	chr19	32254625	32255625	+	937.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-44112.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.35668938036536	4.30212546996172	3.77743539004916	3.60330275957617	3.08006552394842	3.46386009658619	-1.60807570556299	0.0228266885237308	0.176340460373465
Merged-chr5-99254849-4	chr5	99254348	99255348	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1921.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.07954979581334	5.91577583750851	6.14901924371749	5.87774319254258	5.63344745276175	5.97316580644299	-0.390611780728624	0.20638179440987	0.596996918103824
Merged-chr2-124576224-4	chr2	124575722	124576722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-34074.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.81964445967848	4.821594004352	5.23129753898227	4.91930966135482	4.74356035848786	5.01083081444447	-0.157338283496813	0.6960594088148	0.919291538728398
Merged-chr11-50379206-2	chr11	50378706	50379706	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347487, intron 2 of 12)	B1_Mus1|SINE|Alu	1487.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	4.39774099347025	4.17055286205717	4.1535343727639	4.27259709123255	4.66554906867485	4.36447183813245	0.534584933658749	0.255626625693779	0.652679746869433
Merged-chr7-19149797-4	chr7	19149271	19150271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-67.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	5.32258241240505	5.58999092394289	5.59775616990385	5.41738086590172	5.96199457417673	5.42664251620458	0.257332190451692	0.481940398036254	0.82522727772513
Merged-chr4-154942092-2	chr4	154941583	154942583	+	748.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-14006.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.28485645976925	5.29630267171419	5.33660136673615	4.05751645183459	3.54375017994773	4.363301928256	-3.23041699430317	0.000874281964466132	0.0162418516854874
Merged-chr13-17993331-4	chr13	17992839	17993839	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025904)	promoter-TSS (NM_025904)	12.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	6.80456616311244	7.33112421725808	7.19957592406324	6.92792127672619	7.15551029780869	7.07295520948919	-0.111098089439292	0.682365209397885	0.915072334923495
Merged-chr2-48816584-4	chr2	48816070	48817070	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	2461.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.88671450631195	3.74170498427153	3.7698766229822	4.04797832104926	4.0340672824803	4.18013473980155	0.860713587865048	0.0882458963508595	0.394284730900624
Merged-chr12-102453718-4	chr12	102453213	102454213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13900.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.85812861918292	7.96410846520054	7.68330572863975	7.72455148068727	8.16356416005775	7.52479909214275	0.000726820609787438	0.9978214947101	0.999572789544564
Merged-chr18-60733169-3	chr18	60732681	60733681	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-40.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.8623698928011	6.9679598980868	7.11838770907466	7.16777289217119	7.53081102779176	7.07354066545894	0.453876460083551	0.0851295341342377	0.386252608791229
Merged-chr9-110622827-4	chr9	110622308	110623308	+	842.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026012, intron 2 of 4)	intron (NM_026012, intron 2 of 4)	1585.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	4.31069685684743	4.47424413926987	4.57025946890594	4.58331509926269	4.78202594490632	4.63665673432811	0.551288090025446	0.193978751108566	0.581296310830689
Merged-chr3-95644980-2	chr3	95644497	95645497	+	900.791626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-13724.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.64351817106115	5.69759759056001	6.06200555679724	5.95758071996834	5.69246036674124	6.2210095712872	0.282907132893821	0.404208929250576	0.779435115494192
Merged-chr5-22923615-3	chr5	22923105	22924105	+	865.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-176721.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	2.1569981434835	2.24710607102543	2.15736198587967	2.5087401731685	2.4836265404919	2.56735812059191	2.32416343701703	0.0115324335095783	1
Merged-chr1-191421788-6	chr1	191421286	191422286	+	847.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24745.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	3.58908736377058	3.64277811226281	3.6303438782086	4.22864129140129	3.8969345866718	4.01478218713855	1.38225366843707	0.00977804228700739	0.0989535319480711
Merged-chr2-127792476-4	chr2	127791987	127792987	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015476)	promoter-TSS (NR_015476)	1.0	NR_015476	67885.0	Mm.27359	NM_175125	ENSMUSG00000051319	1500011K16Rik	-	RIKEN cDNA 1500011K16 gene	ncRNA	5.34731320902664	5.28983736173022	5.07910308176186	4.83017158358716	4.91154950970983	5.10944336757846	-0.638531623858374	0.0857832252136538	0.387863424636076
Merged-chr8-71310588-4	chr8	71310063	71311063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	RLTR17|LTR|ERVK	37849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	7.24412402969984	7.5375595184065	7.28351359616337	7.33530388950026	7.29187672953704	7.03797818264209	-0.194371374801345	0.435025639513648	0.798753078814766
Merged-chr5-134224887-1	chr5	134224387	134225387	+	545.0	f1_c57bl6.idr	intron (NM_010876, intron 7 of 10)	intron (NM_010876, intron 7 of 10)	4738.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	2.97030946788806	3.11119273401489	3.27190135095599	3.10454794100962	2.96447305211995	3.44615692074352	0.25827812036888	0.705210695182814	0.922730041431786
Merged-chr8-81010528-2	chr8	81010022	81011022	+	610.375	f0_c57.idr|f1_c57bl6.idr	intron (NM_027554, intron 2 of 9)	Tigger5|DNA|TcMar-Tigger	4384.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.0686544217796	3.222905413549	2.89847330527198	3.36260343244061	3.38520589812138	3.40084265629571	1.26948992537732	0.0605651716618935	0.31867375766048
Merged-chr9-121536300-4	chr9	121535807	121536807	+	789.516663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-40613.0	NM_031161	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	3.13858206229109	3.14041043608387	3.26977494726188	3.10718859393513	3.05006379080955	3.17300909007128	-0.320364501181634	0.616145012263398	0.888272754285876
Merged-chr2-124753844-4	chr2	124753335	124754335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	100254.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.8571215369463	5.67029778465937	6.07587766594212	5.58084700421875	5.78930466021996	6.21436080403173	0.015365896699498	0.964622811269574	0.991519129389361
Merged-chr9-120933398-4	chr9	120932884	120933884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-16.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	5.91792773735666	5.22432779157826	5.62490761698752	5.91082617141523	5.00426661975915	5.63360459024478	-0.0963728864286607	0.822394351117859	0.958041123079214
Merged-chr2-132121306-4	chr2	132120798	132121798	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	B3|SINE|B2	23810.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	3.90107923577937	3.61839848274166	3.78888886425208	3.55540689446013	3.84249024331962	3.80791861139878	-0.100162370325979	0.855679670774161	0.966244542232428
Merged-chr4-149586896-5	chr4	149586436	149587436	+	757.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023051, intron 1 of 18)	CpG	468.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	3.02778360518177	2.59945781818991	2.83367706875211	2.79346989870434	2.52669733355331	2.72004981625593	-0.789596222252226	0.314221088590583	0.708637665307082
Merged-chr9-70237776-1	chr9	70237276	70238276	+	827.0	f0_balb.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	30426.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	4.37920356743584	4.4995226748366	4.30084014491694	3.82150398090976	3.69680433770741	3.83054164627345	-1.86810424448739	0.000208012843428383	0.00517129748311589
Merged-chr16-44172394-4	chr16	44171906	44172906	+	886.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-991.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	6.14443386942014	6.4310846982842	6.15980539830457	6.09393932057203	6.41534491571237	6.17728991385946	-0.0218886647532248	0.941163826725832	0.986908937621943
Merged-chr14-79521888-2	chr14	79521388	79522388	+	973.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6214.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.66692397925047	6.89856244546474	6.50437972785147	6.73018344204613	6.55405651510142	6.73316491401534	-0.0620611196769019	0.818912828013986	0.95713841971837
Merged-chr8-14678092-1	chr8	14677592	14678592	+	660.0	f0_balb.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-210444.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	3.64628573215965	3.71027348597454	4.08184811904403	3.69550539109403	3.94613541208039	3.60833707904187	-0.167144759490111	0.768971727404577	0.942983923980385
Merged-chr4-58551998-4	chr4	58551511	58552511	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	1282.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.71701179176468	2.6742565268483	2.47962692388795	2.76946921691943	2.75220360670219	2.93612988435865	0.990436484545036	0.203146874828533	1
Merged-chr17-71004473-4	chr17	71003947	71004947	+	997.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1914.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	3.85805842809584	3.76420428642909	3.80033411883695	4.22167243176898	4.45020429264009	4.31120042301076	1.54565701798871	0.00176244507954824	0.0280293444531824
Merged-chr6-67168493-4	chr6	67168020	67169020	+	836.145874	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42|LTR|ERVK	-98459.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	3.26016963776923	3.29158021791839	3.54192996153128	3.26487864062591	3.16994871169382	3.61098376575429	-0.0422011645628618	0.946970649909016	0.988007649185823
Merged-chr4-119004429-3	chr4	119003915	119004915	+	916.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42448.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	2.89633149849899	2.787674303017	3.07485752469388	3.39636880968705	3.13391053727143	2.96333124180017	1.18473225189288	0.0936199454850343	0.407509223933344
Merged-chr6-120357421-4	chr6	120356900	120357900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026028)	promoter-TSS (NM_026028)	69.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	6.53623537738053	6.60306700985294	6.35781873132237	6.42237697191635	6.56577174786035	6.56455428513584	0.0136175189081357	0.959361175960132	0.990174309444982
Merged-chr11-115687079-2	chr11	115686579	115687579	+	606.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	L1M4|LINE|L1	12455.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.4291773234723	4.61280456698775	4.86570134601429	4.65832509464314	4.75640513149764	5.40525347287515	0.747860240008068	0.105431402260309	0.433371344132578
Merged-chr7-4227152-3	chr7	4226620	4227620	+	649.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10634.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	2.89768928439794	2.86676029065592	3.10157500287117	4.18233692726511	3.88578894592409	4.19619087734881	7.47680752832168	3.61481106903164e-09	3.63701571259957e-07
Merged-chr18-36738979-2	chr18	36738479	36739479	+	615.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_028036, exon 8 of 12)	exon (NM_028036, exon 8 of 12)	3909.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	3.29329196586923	3.12256195713311	3.34427025915004	3.0855979154829	3.11318566006927	3.46658651515842	-0.114886104594871	0.859574901782356	0.967383530375476
Merged-chr11-89028902-4	chr11	89028434	89029434	+	931.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29531.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	6.42350847968426	6.16758256098788	6.51246350827725	7.58034410717533	7.95849425252182	7.69098653441943	2.11163194410863	8.63377644192259e-16	2.77374235590539e-13
Merged-chr13-85556313-3	chr13	85555803	85556803	+	822.438904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266817.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.59146701508846	2.51884419527147	2.67585471850403	2.59674285445331	2.44427427842726	2.56201692653834	-0.355987017151361	0.646036675287371	1
Merged-chr10-99204721-4	chr10	99204195	99205195	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58536.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.5998180313467	6.44959856284822	6.44776692835474	6.67648126197184	6.94073920989543	6.41118961497456	0.325801434352223	0.252508705276076	0.649921954382832
Merged-chr12-71015362-1	chr12	71014862	71015862	+	1000.0	f0_c57.idr	promoter-TSS (NM_001081195)	promoter-TSS (NM_001081195)	461.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	7.87548878186006	7.98876773690718	7.45634637391232	7.73779096863503	7.82998581587074	7.87573168832848	0.0171019932633445	0.944677753180811	0.98786315338489
Merged-chr11-44527848-2	chr11	44527348	44528348	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	8471.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	4.96167012517685	5.25682102360239	5.11918105290749	5.99143683074679	5.91302416813855	5.76322494434985	1.47538100397092	1.38636069068129e-05	0.000531350991940159
Merged-chr17-27914806-1	chr17	27914306	27915306	+	651.0	f1_c57bl6.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	5500.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	3.46051476680202	2.96068655743174	3.0546886110704	2.96210931625782	2.7902389398668	2.87652479802064	-1.42397151933651	0.0514461777453925	0.289206589557218
Merged-chr6-97398563-4	chr6	97398070	97399070	+	978.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60716.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.41858823782918	6.43543874790822	6.37033351860503	6.75185416466914	6.5448004355839	6.4302634327179	0.283531993270159	0.292758201394222	0.689885476081214
Merged-chr19-5817010-2	chr19	5816510	5817510	+	895.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14338.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	5.27367040337307	4.74191726396691	5.08986648364096	4.88402954304023	4.90238909697636	5.08738555835984	-0.209943560726304	0.601398914395449	0.881938496212464
Merged-chr3-94821411-3	chr3	94820883	94821883	+	661.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16184.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	4.62094636857538	4.59527132068656	4.7787696563242	4.32866793488567	4.52501432292647	4.69610803765804	-0.345327303528546	0.419023616571431	0.788801788481746
Merged-chr2-156720920-4	chr2	156720439	156721439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	-26.0	NM_001042488	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	8.33131482092447	8.09220099860965	7.8992558731241	8.22210051801369	8.12316662653261	7.76593082217667	-0.0951865370279668	0.702841358000619	0.922007657641071
Merged-chr13-37793127-3	chr13	37792606	37793606	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32932.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.21204318550938	5.31337326820793	5.20298854068807	4.51848797964487	4.16303099139832	4.47928466365268	-2.0199344476111	1.35318400036793e-06	7.0770417537784e-05
Merged-chr19-11263747-4	chr19	11263278	11264278	+	931.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2373.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	5.26463774805393	5.28524417024757	5.38107092568589	5.62801468339534	5.68038642521495	5.93390871667181	0.833715478537938	0.011800687611709	0.112875949560505
Merged-chr16-91877597-2	chr16	91877097	91878097	+	573.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	54033.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.44878633457026	3.19190917128307	3.89649445886083	3.70329372736183	3.54738446182795	4.00825343627474	0.748750170048237	0.244944687494635	0.642357387785736
Merged-chr4-34552827-2	chr4	34552327	34553327	+	881.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001007589, intron 1 of 4)	B1_Mus1|SINE|Alu	2212.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.18569294277874	3.0100469580709	3.35573933556314	3.27118222405551	3.26553663015329	3.4261206437116	0.554814637699218	0.383851193403138	0.765036051179388
Merged-chr3-105041752-2	chr3	105041252	105042252	+	807.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	11201.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.23980263647916	5.24909016497729	5.12677938816961	5.83508984649513	5.86867158155324	5.74183910188242	1.15309338739951	0.000418561459930214	0.0091219648920569
Merged-chr10-80739794-2	chr10	80739294	80740294	+	652.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	B3|SINE|B2	2481.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	3.77623174071447	3.77799138616361	4.06787755999163	3.71714001184956	3.50168319544603	4.04749306229189	-0.352795486318139	0.533939004111011	0.852777001391163
Merged-chr11-58106130-2	chr11	58105591	58106591	+	683.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	1862.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.97475957725699	4.17090066360812	4.15898969967112	3.55186576085181	3.26739116472372	3.80708435686239	-1.88190714587001	0.00154878165244645	0.0253184722469084
Merged-chr17-28257020-4	chr17	28256525	28257525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-14683.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	5.93527602313367	5.39830417413977	5.27448744451554	5.83703620794836	5.49283289334299	5.53238477465633	0.0920992274030251	0.807120639387355	0.954472851360829
Merged-chr17-12250099-4	chr17	12249593	12250593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	68567.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	6.99183537432914	7.28589435396272	6.73201718136948	6.92497861538014	7.37669775636006	6.6707221914415	0.0100440885728298	0.974350685907713	0.994276686350905
Merged-chr1-92911668-7	chr1	92911350	92912350	+	818.852356	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181405, intron 1 of 10)	intron (NM_181405, intron 1 of 10)	1025.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	4.58652212946742	4.47524662633097	4.55133803684257	4.21979514500951	4.39549425048887	4.57745238006862	-0.349027934102585	0.426572773294842	0.793840707522572
Merged-chr5-124112090-7	chr5	124111602	124112602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025671)	promoter-TSS (NM_025671)	-219.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	7.12164458859021	7.16135426960681	6.89420714425518	7.30489754936943	7.36544878216723	6.96740068881101	0.24375431196279	0.344306113624533	0.732980075743821
Merged-chr17-43030352-3	chr17	43029866	43030866	+	650.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	13811.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.0099112601361	5.13074910800542	5.0230206651001	4.65727910421268	4.72178011970028	5.08709561802739	-0.514991795067671	0.19170122621325	0.578482470107785
Merged-chr4-132336055-4	chr4	132335559	132336559	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 4 of 9)	intron (NM_133878, intron 4 of 9)	-6521.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	4.9471150700346	5.06792963869267	5.27914502556844	6.50229104815028	6.70880262647699	6.00591140360905	2.46637674092267	1.9405658073724e-12	3.53327351640794e-10
Merged-chr11-69323282-3	chr11	69322767	69323767	+	860.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001024206)	promoter-TSS (NM_001024206)	606.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	7.12049031850781	6.90874655278595	6.66517496180024	6.87031457060631	7.03134889315299	6.60132413517545	-0.0968383710312874	0.730244378883644	0.930835888263098
Merged-chr15-81081501-4	chr15	81080966	81081966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	23581.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.94722196530452	6.65188281780358	6.4183477743429	6.61055924964767	6.49076967649489	5.98056013703895	-0.476687133320678	0.138319653886505	0.497020805986067
Merged-chr8-104115709-3	chr8	104115191	104116191	+	853.8666380000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 2 of 11)	MTE-int|LTR|ERVL-MaLR	-9818.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	5.10255439429275	5.21930340397943	5.92775211269827	5.82639542566736	6.17785069591704	5.82698342622633	0.916426150541954	0.0191596896049018	0.15708340256623
Merged-chr17-33948661-2	chr17	33948161	33949161	+	997.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_020603, exon 12 of 15)	exon (NM_020603, exon 12 of 15)	2827.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	2.49632015962985	2.52790619239653	2.69157065342075	2.46032619317525	2.41831785196461	2.87983511650184	0.143380795158533	0.860121330961093	1
Merged-chr7-19084658-4	chr7	19084145	19085145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	796.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	7.84288784437625	8.04288577571186	8.19448624533802	8.39024737139279	8.56909670873901	8.41255067983068	0.605882572173784	0.00608190165224328	0.0704626667613282
Merged-chr12-102437691-2	chr12	102437208	102438208	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_011175, intron 1 of 13)	B1_Mur2|SINE|Alu	2105.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.57793154446227	8.50447929791017	8.08935200758678	8.45175215121774	8.69627348614547	8.30237629740819	0.117374265308233	0.632907718796583	0.895781348284166
Merged-chr2-11501458-4	chr2	11500943	11501943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	CpG	647.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	7.99762397000832	8.41280916700238	7.6861670575956	7.79395971596715	8.02224139185788	7.24139721759515	-0.4804993307944	0.122270293568852	0.467742475623053
Merged-chr7-67529258-3	chr7	67528746	67529746	+	729.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	115990.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	4.10630919918088	4.03807558238483	4.20469495878165	3.56479958184017	3.51496652085633	3.58456369410521	-1.87483054272416	0.00060491631205067	0.0122228937574337
Merged-chr18-36727706-4	chr18	36727195	36728195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009841)	promoter-TSS (NM_009841)	-880.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	7.87565875387704	8.38761611828438	7.82227081924378	7.94211679856349	8.29692322335553	7.73623783656199	-0.0574689280738099	0.8371437497028	0.962060896155883
Merged-chr1-128632788-4	chr1	128632345	128633345	+	956.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40546.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.43120526787687	5.64751940135859	5.82531915610518	5.36432874208236	5.47973222401296	5.66812843494007	-0.251438888472042	0.459675595238958	0.813819730244683
Merged-chr15-25364833-4	chr15	25364423	25365423	+	805.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48841.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.54083998385751	5.34290673215143	5.1156922209021	5.47104999067127	5.1805247835953	5.4413826266699	0.0167705100148959	0.963106082711541	0.991042187277023
Merged-chr7-80583095-4	chr7	80582621	80583621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48002.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	5.60450516090846	5.42456307064715	5.45133277322987	6.19564081159394	6.02592748258012	5.66572307682013	0.889428931822293	0.00735980315978905	0.0810689040666835
Merged-chr7-140857403-4	chr7	140856956	140857956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053194)	promoter-TSS (NM_053194)	59.0	NM_053194	101489.0	Mm.281916	NM_053194	ENSMUSG00000025485	Ric8a	AI114950|RIC-8|Ric8	RIC8 guanine nucleotide exchange factor A	protein-coding	7.02580008721857	6.95574252861221	7.18240560496125	7.06566255823238	6.97675578355392	7.19297701892069	0.0354936669086321	0.884698518744956	0.973538624783452
Merged-chr7-27167171-4	chr7	27166679	27167679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053208)	promoter-TSS (NM_053208)	-377.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	8.35762176269317	8.3797168998415	8.10203203722542	8.4035849356314	8.62991863876201	8.29235118515676	0.229228754480209	0.308774162901945	0.704725876675794
Merged-chr6-97449385-2	chr6	97448885	97449885	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	B4A|SINE|B4	9901.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.94383952249058	7.43038702001997	7.44916158733639	7.42705572416021	7.55629819906414	7.50618610244924	-0.201392773291788	0.43696138897782	0.799714006663132
Merged-chr6-4903606-3	chr6	4903137	4904137	+	960.380981	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 1 of 15)	CpG	317.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.44470261624596	6.60728910512054	6.15230971589289	6.47234430217426	6.31778626817095	5.91965393373534	-0.257860393112138	0.413411658874984	0.785010436140338
Merged-chr18-36699733-4	chr18	36699243	36700243	+	960.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3818.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	6.05956539292257	6.25152141253219	6.24468465249498	5.76291225855742	5.62675744816752	6.18739982231418	-0.5561333854305	0.0841102861142704	0.383747675208323
Merged-chr9-56075438-4	chr9	56074943	56075943	+	897.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.42616046561035	4.53343427225944	4.3277296323314	4.40558884056138	4.41850070645074	4.60718931443815	0.090303706866459	0.83595117884368	0.961873866737315
Merged-chr10-121463829-5	chr10	121463280	121464280	+	839.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	RMER19B|LTR|ERVK	12470.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	4.98824811439958	4.58106197375096	5.24310566353441	5.39328681461995	5.38408486127711	5.33703792563433	0.867246940237423	0.0284083082610999	0.201822609202602
Merged-chr5-31758961-4	chr5	31758453	31759453	+	982.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	60903.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.15017183614749	6.31877248131795	6.31889598046883	6.30222501113501	6.42118937338041	6.43466051454575	0.205364081240832	0.452914045404378	0.809478303333781
Merged-chr11-75325451-4	chr11	75324855	75325855	+	726.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026653, intron 5 of 16)	intron (NM_026653, intron 5 of 16)	23028.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	5.94359163340497	5.71473942063204	5.67743366437152	6.36532333684142	6.27092619232636	6.0250567349535	0.768040277624829	0.0121041691011961	0.115012413220546
Merged-chr1-88705308-4	chr1	88704782	88705782	+	933.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-3091.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	4.44934887664201	4.56773526966041	4.33168480973826	4.37888180070351	4.45153655912978	4.57064373934499	0.0125904199222115	0.976937415152317	0.994769134402338
Merged-chr4-141146747-2	chr4	141146247	141147247	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1175.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.16653362402916	6.16184598665014	6.35049034622393	6.10277358432919	6.38909562000967	6.17139859025479	0.0211684841669872	0.941383361758599	0.986966884208524
Merged-chr16-91850316-2	chr16	91849816	91850816	+	985.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	81314.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.29566880272774	7.07660918759068	7.50366208266882	7.24383417449085	7.45585237349859	7.25390242252221	0.0445939423873587	0.859708838777276	0.967423539737178
Merged-chr3-109448462-4	chr3	109447960	109448960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	L3|LINE|CR1	107777.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.71568970693133	5.77423843158255	5.48835912678528	5.16690737141994	5.37610812832084	5.16155418511946	-0.81657897571767	0.0178333831784301	0.149750746544638
Merged-chr6-31169562-4	chr6	31169050	31170050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48924.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.44880835885378	5.98433133916467	5.93179486662347	6.5688513035771	6.69302061673808	5.88787485988948	0.477610772104199	0.18168001459399	0.564138920563373
Merged-chr18-75501721-3	chr18	75501218	75502218	+	755.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-12927.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	4.52865237307017	4.60302500782419	4.84304102841048	4.57211701175972	4.29326158389651	4.97339103528292	-0.0672714823767783	0.884208739511485	0.973466734537782
Merged-chr16-17177688-2	chr16	17177188	17178188	+	570.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009456, intron 1 of 3)	intron (NM_009456, intron 1 of 3)	23804.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	3.2539566474508	3.17003900181239	3.24747070041611	3.13823548149175	3.10401320211253	3.20523051127569	-0.327984920312547	0.602012779354902	0.882187830872038
Merged-chr18-75599947-4	chr18	75599458	75600458	+	981.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 6 of 11)	RMER1C|Other|Other	85313.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	3.22518315137737	3.08588597735709	3.03803162709439	3.01751490521577	3.12130535823074	3.39200838640105	0.252031169428352	0.704187775754392	0.9223772679418
Merged-chr10-61146957-4	chr10	61146499	61147499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316674, intron 1 of 14)	(CAGCT)n|Simple_repeat|Simple_repeat	685.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	8.83115688401217	8.66799966109624	8.72224830697688	8.8804384108956	8.67201795415541	8.76368420074671	0.0431932458593945	0.830834138128499	0.960370002015736
Merged-chr3-96498944-1	chr3	96498444	96499444	+	544.0	f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-26241.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	2.55505921968219	2.48600684199248	2.68976963075124	3.05058173480162	2.89543887830654	3.18105329258781	2.6728442439664	0.00107063673788697	0.0189988359322028
Merged-chr12-32693117-3	chr12	32692606	32693606	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127229.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	4.80444757959258	4.96300202588173	4.77543716880386	4.54639111962972	4.10838693281479	4.64791516227045	-0.992202617644702	0.0271883080007219	0.19636183769847
Merged-chr1-174042255-2	chr1	174041735	174042735	+	710.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	302.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	5.07337622446603	4.48992843963273	4.82141387393039	5.05042465338003	4.90850581103875	4.68657346144415	0.169675623923363	0.694729748928038	0.919217788511748
Merged-chr19-34621105-4	chr19	34620620	34621620	+	955.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053217, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8691.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	3.36775408851463	3.01107480037916	3.39477176525325	3.1340870307813	3.38542213059627	3.51708335691997	0.339142414110187	0.606656327595802	0.884244059153911
Merged-chr9-44733703-2	chr9	44733203	44734203	+	962.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153537, intron 1 of 21)	CpG	1495.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	3.84678179978466	3.40065362879453	3.75956272800877	3.63019670411709	3.40849540590489	3.46005396016798	-0.643355475051317	0.282020968439695	0.679908771156903
Merged-chr6-108660115-1	chr6	108659615	108660615	+	1000.0	f0_c57.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-514.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	9.15735807135774	8.94282173816453	8.56004285262822	8.65702930179995	8.76948913907937	8.21674437557481	-0.46670592227716	0.0774214761154977	0.367028611247626
Merged-chr2-4456742-2	chr2	4456242	4457242	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	B4A|SINE|B4	55766.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.04900615041958	2.23675631197228	2.11558356283736	2.26026773743706	2.27383744152532	2.38931372463878	1.19316946187384	0.183812899278992	1
Merged-chr10-108162075-4	chr10	108161577	108162577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027892)	promoter-TSS (NM_027892)	-323.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	8.16009532287403	8.19183651945876	8.18310196358055	8.01864286610824	7.99773201373819	8.04065616829097	-0.226647933443127	0.265460006151206	0.663161206920213
Merged-chr3-58556832-2	chr3	58556288	58557288	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001005509, intron 13 of 13)	intron (NM_001005509, intron 13 of 13)	-19848.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	3.67456015828558	3.44936729578386	3.9447230914966	4.93453914128559	5.34690832604644	5.04487502733663	4.39645250982768	5.12085149541346e-13	1.03672946771378e-10
Merged-chr2-131517745-4	chr2	131517246	131518246	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177840, intron 3 of 3)	intron (NM_001177840, intron 3 of 3)	25884.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	4.75342490180365	4.44283635430866	4.94220145571654	4.70907054551432	4.56619489429683	4.42328202900033	-0.342819127139621	0.436479615628421	0.799486950869076
Merged-chr6-89277783-4	chr6	89277291	89278291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	7934.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.9475844257993	6.1664311653211	5.82875790767061	5.76437209164716	5.74834543361906	5.73351377419903	-0.440334747606559	0.152304287882708	0.520263755512759
Merged-chr16-43966018-4	chr16	43965538	43966538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13012.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	6.66625001561251	6.84538575684141	6.45488408770429	6.17614419012312	6.4903798387991	6.45901296958475	-0.464922065655578	0.102547745440584	0.427066706837844
Merged-chr13-45966713-4	chr13	45966215	45967215	+	868.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1724.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.31576913076339	5.12497537742976	5.07432075696396	5.53661561141609	5.21514409206249	4.9903020557294	0.188368744521902	0.62010718445225	0.890026802452616
Merged-chr15-97927993-4	chr15	97927502	97928502	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19706.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	3.88022440664424	3.46254413071477	3.39545275438907	3.83830062159372	3.48494423121254	3.52909192358924	0.080250459597875	0.89616769723921	0.975793383188212
Merged-chr15-58344944-6	chr15	58344556	58345556	+	831.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 7 of 8)	intron (NM_027211, intron 7 of 8)	-20887.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	5.28706764583931	5.46549059159808	5.30378937174738	5.42348941691797	5.5671210932506	5.60241284872525	0.333959266631821	0.318152457856408	0.711883984008282
Merged-chr10-98608633-4	chr10	98608133	98609133	+	978.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-256766.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	5.55386224272806	5.36975180850797	5.15741671514664	5.34224677321903	5.52703798707679	5.18706604471949	-0.0179356998022858	0.960407761279404	0.990380695859216
Merged-chr6-39259379-4	chr6	39258855	39259855	+	893.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52582.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.33328017681212	5.77448182177006	5.81802637301569	5.64730268078848	5.63898276701471	5.65179223768218	-0.0165937571505893	0.960982197537615	0.990386809359123
Merged-chr8-36122117-2	chr8	36121574	36122574	+	938.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27246.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	5.53067965808245	5.88778172883882	5.43472722134318	5.06689337330575	5.12990169121466	5.34505194718003	-0.905689351039031	0.0117803091453759	0.11274625757631
Merged-chr11-5759125-3	chr11	5758622	5759622	+	701.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361588, intron 1 of 6)	Lx8b|LINE|L1	-3028.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	5.19283530212392	5.71815928922039	5.55204972445888	5.0716305109989	4.83703291113935	4.90776222768062	-1.15535905865615	0.0025922444876978	0.0376958195268016
Merged-chr9-75558117-1	chr9	75557617	75558617	+	541.0	f1_balb.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	1540.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	4.57869983211468	4.15461627957582	3.97515155499464	4.45821438989109	4.35168564984189	4.34662711295096	0.297571011809511	0.548729358586195	0.859959175598752
Merged-chr11-117848489-4	chr11	117848024	117849024	+	925.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-713.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	7.3637833734504	7.49612605450001	7.70725086234438	7.61424246887449	7.84588570965007	7.72068689328167	0.303625378082818	0.197510876048688	0.585565630095462
Merged-chr2-28539377-3	chr2	28538861	28539861	+	872.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	5897.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	6.5236156029783	6.4538493798787	5.73568684795954	6.22054554371141	6.255233484708	5.91120492288088	-0.254006289757932	0.465473532950786	0.817020164214671
Merged-chr11-106674057-2	chr11	106673557	106674557	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	B4A|SINE|B4	41224.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	7.37293804604848	7.13654321045814	7.40738506490605	6.98442542932762	7.22019355382076	7.19951944985077	-0.250479400919576	0.309054395406823	0.704802606494279
Merged-chr11-95896665-2	chr11	95896165	95897165	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008081, intron 1 of 10)	intron (NM_008081, intron 1 of 10)	18206.0	NM_008081	14422.0	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	4.42696310227451	4.11692354649065	4.21070062493747	4.14998983909681	3.98058010916487	3.98786579693383	-0.618236604547091	0.203196295138171	0.593047970473348
Merged-chr10-10287669-4	chr10	10287074	10288074	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	184740.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	3.25496296633811	3.38830870690426	3.10575476373762	2.86995736008234	2.86829298711992	2.99574675571641	-1.65203442731057	0.0174693368666055	0.147557644203318
Merged-chr2-35399098-2	chr2	35398598	35399598	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1924.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	2.44182944095252	2.36962130898226	2.67141439182996	2.47838721851536	2.19928783612814	2.36900117248487	-0.916696516385707	0.28612439474978	1
Merged-chr8-111337772-7	chr8	111337297	111338297	+	952.7023929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310613, intron 1 of 10)	intron (NM_001310613, intron 1 of 10)	408.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	6.74526314041786	6.73993754028654	7.14941887186254	6.94553900379742	7.3334326458136	7.12257114759999	0.404585040770542	0.139736265858621	0.499492018625488
Merged-chr14-51128377-2	chr14	51127877	51128877	+	659.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-660.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	3.12712882080225	2.58750721060765	2.78054501407959	2.90299464450013	3.0673750924723	3.57855160694302	1.57336566290739	0.0599745182543974	0.317073284320274
Merged-chr3-105802702-4	chr3	105802189	105803189	+	862.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1308.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	6.93588810322683	6.59729669845054	6.7420019099063	6.99889869887893	7.00756598648424	7.09466594822383	0.407836561852544	0.110818886056989	0.444841551070303
Merged-chr12-83688635-4	chr12	83688138	83689138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	75.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	8.87594737537127	9.15852088322769	8.83085897771772	8.86963708120621	9.18887797219993	8.69048179045	-0.0374480402066593	0.874581317692498	0.970754540400126
Merged-chr5-53998369-4	chr5	53997865	53998865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081103)	promoter-TSS (NM_001081103)	-158.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	6.07402979031739	5.98102146163677	6.00320367389997	6.39063912330933	5.63228230181785	6.13043109737208	0.109745712984141	0.748137838136312	0.936880860325556
Merged-chr5-36742635-4	chr5	36742101	36743101	+	850.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6078.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.79820860194758	3.8126178108036	3.5632377150887	3.87189915227402	3.68375205728419	3.69087494418865	0.0499098231480368	0.927220708124221	0.983584626679457
Merged-chr5-36562975-1	chr5	36562475	36563475	+	1000.0	f0_balb.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19422.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	7.27960287940656	7.45711165337778	7.21596483032016	7.22913283205879	7.46808226759182	7.30865550471533	0.0252301484680521	0.916165349354788	0.981243905880233
Merged-chr3-51518627-4	chr3	51518116	51519116	+	998.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_080793, exon 8 of 8)	3' UTR (NM_080793, exon 8 of 8)	34650.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	3.71472837554436	3.83462404885771	3.920069417963	3.63018291606864	3.85612517286412	3.84302451226936	-0.128508489379023	0.808821064749627	0.954721853010197
Merged-chr12-85647498-4	chr12	85646988	85647988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39232.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	5.90065228840752	5.64176055992183	5.79486779077042	5.72183771512169	5.9550045609313	6.06440121394266	0.241226755429667	0.443643781232416	0.803884349333946
Merged-chr6-39527476-4	chr6	39526963	39527963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30371.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	7.64846646805836	7.87634493341881	7.34805267792517	7.92044257351622	8.076413728765	7.38174632034329	0.266814644581326	0.353027003520352	0.74042924884689
Merged-chr15-74909707-2	chr15	74909207	74910207	+	776.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28003.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	2.56491207687952	2.68187241676208	2.4991856506303	2.62775788515493	2.74730658273089	2.82340894812284	0.808028621232685	0.29449093527137	1
Merged-chr6-88040620-1	chr6	88040120	88041120	+	542.0	f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	B1_Mur2|SINE|Alu	4397.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	3.56377441057554	3.42288494426143	3.69944158808203	3.45799378472572	3.41993314698753	3.45570294927862	-0.431370951434496	0.456220405703207	0.811465926717096
Merged-chr9-25571692-3	chr9	25571185	25572185	+	658.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	90088.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.43104197793364	4.28816935250954	3.86067781556168	3.91471861171596	3.76195087982257	3.70469678161286	-1.27329849638556	0.0186333304085884	0.154303558582586
Merged-chr12-8901259-4	chr12	8900724	8901724	+	938.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20083.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	3.58920473611851	3.71387425283058	3.91441430675537	3.97621594778729	3.5106881612774	4.02872003929392	0.357231447673562	0.53314579829258	0.852197548492566
Merged-chr13-55428914-3	chr13	55428393	55429393	+	678.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2089.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	6.991574959415	6.96993407172059	7.24796654361043	7.61171995709951	8.04167911873799	7.45000754426967	0.980401028298843	0.000271863343098556	0.00642465352244949
Merged-chr16-91853717-4	chr16	91853170	91854170	+	988.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	77960.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.53495299020339	6.37166030214565	6.26530163793066	6.31947709558509	6.33025026443979	6.19923153430691	-0.185470314192433	0.5027423998343	0.8366663412982
Merged-chr13-5866425-4	chr13	5865932	5866932	+	847.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	4943.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.15422270220425	5.04516216738509	5.13552619912629	5.06353416390201	4.61967225611397	5.10093133619686	-0.381146843882761	0.336598053930767	0.726578163839891
Merged-chr15-58251056-2	chr15	58250556	58251556	+	694.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36164.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	5.52390294418457	5.40722543217387	5.16447198297194	5.4780621578803	5.75080867488235	5.29993659035177	0.293804427939983	0.414609478940353	0.785903946139118
Merged-chr17-5596102-2	chr17	5595602	5596602	+	775.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	103502.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.08718538411621	5.14071507222716	5.10907890077215	4.7946563519204	4.78173891102051	5.26615504209478	-0.343237179271547	0.381775505348228	0.763352232333761
Merged-chr9-35052458-1	chr9	35051958	35052958	+	667.333313	f1_balb.idr	intron (NM_009178, intron 8 of 10)	intron (NM_009178, intron 8 of 10)	-64270.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.22577624052434	4.2841788331091	4.76345368195746	4.40558806118828	4.46245274051392	4.89441617069286	0.398378243094864	0.407072455453504	0.781263634491412
Merged-chr15-81523415-4	chr15	81522924	81523924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57108.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	8.2164241307351	8.12899716347282	8.08723159182088	8.27495652857907	8.58927117280645	8.1640208654577	0.302787347622296	0.183862608819342	0.567257651230328
Merged-chr13-3770189-1	chr13	3769689	3770689	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	34129.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	3.32164405393963	3.39756541223723	3.20554617089448	3.15147932786217	2.92990779659303	3.21968500689165	-0.925865280052893	0.158668040707378	0.530447689219215
Merged-chr17-35023880-4	chr17	35023370	35024370	+	933.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001347347, exon 13 of 17)	exon (NM_001347347, exon 13 of 17)	4146.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	4.12149480448258	4.08076134946128	4.10300032272365	4.12236560505383	3.73106226084316	4.17110777114275	-0.259527767963724	0.61129818256442	0.886009147952765
Merged-chr11-88955474-4	chr11	88954986	88955986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029023)	promoter-TSS (NM_029023)	-44.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	8.09709278401183	8.23804800794542	7.50834636089484	8.06084444921901	8.24081891071624	7.55432109416216	-0.00196008487511962	0.994813957144192	0.998961028701257
Merged-chr11-72796153-4	chr11	72795656	72796656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	-70.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	7.29471980380633	7.43969189977054	7.17896681287442	7.54207897914635	7.50352510385634	7.19886805164122	0.171960690041441	0.483882526106318	0.826584678003739
Merged-chr5-43780926-2	chr5	43780456	43781456	+	621.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_178729, intron 1 of 8)	intron (NM_178729, intron 1 of 8)	1193.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	4.01503873318643	4.62221420470871	4.44627816734427	4.22568933198059	4.38496610457433	4.51276538017387	-0.029324122637735	0.952331245018287	0.989068549972429
Merged-chr7-46059112-4	chr7	46058597	46059597	+	950.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153057, intron 15 of 30)	intron (NM_153057, intron 15 of 30)	25401.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	4.03942096670641	4.31382847043664	4.51524603802374	4.49421684415098	4.48304690221953	4.62010289261391	0.605890550020265	0.186760892351367	0.571554685011313
Merged-chr6-73436759-3	chr6	73436280	73437280	+	941.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_108032)	TTS (NR_108032)	32887.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	2.23256344697492	2.1290516540937	2.40774345383331	2.54751459217457	2.52112429093316	2.54688669773467	1.9493767752434	0.0287910973782138	1
Merged-chr7-19694813-2	chr7	19694313	19695313	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2154.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	5.69402675644855	5.83020878817532	6.19282080546551	5.96998052530049	6.00760235590814	5.75433232005579	0.0213127497274805	0.947606053709073	0.988008807662239
Merged-chr7-37490507-4	chr7	37490009	37491009	+	925.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172385, intron 5 of 5)	intron (NM_172385, intron 5 of 5)	279243.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	3.48376676519519	3.46580767434698	3.29450596105521	3.29233073313344	3.2239214797173	3.58407472023059	-0.207247154437925	0.7366577841372	0.933222784298367
Merged-chr10-60289124-2	chr10	60288624	60289624	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001146124, intron 1 of 13)	B1F|SINE|Alu	4663.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.45565075977532	5.7074202833224	5.6711140513145	5.887509910969	5.84487699333251	5.95485257104862	0.505010657221321	0.105831997313308	0.434277059864578
Merged-chr10-127619377-4	chr10	127618886	127619886	+	926.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	1762.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.0822130821561	7.16398381430862	7.61999876433333	7.27284191867192	7.40981572610188	7.29004370338483	0.0387381267043317	0.883226608035469	0.973347392063704
Merged-chr13-75822192-2	chr13	75821682	75822682	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A|LTR|ERVK	-17703.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	3.39791041425156	3.58416101803641	3.6692983470564	3.34504662495437	3.2976257419058	3.48122981567634	-0.678563716077565	0.25236312324475	0.649830747012104
Merged-chr2-166703133-3	chr2	166702627	166703627	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	10705.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.79451777892366	4.96289648860344	4.91222967497358	4.8553049716411	4.49722372423572	4.83150088654921	-0.371823587569017	0.361306678574518	0.747252891113536
Merged-chr4-133841224-2	chr4	133840712	133841712	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33519.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	2.10939395888473	2.11454256684868	2.31709319340472	2.10241856098135	2.1355624506628	2.13190364930758	-0.407494913804737	0.646474136467051	1
Merged-chr17-70831815-4	chr17	70831326	70832326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	14951.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.89370494163893	7.47527692093007	7.98607856282022	7.57740123634915	7.77787930427378	7.55951521554541	-0.221181196885778	0.382382201868014	0.763956450562662
Merged-chr15-86226846-2	chr15	86226346	86227346	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	12387.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.77245296380705	3.57507297535494	4.02485236965495	3.50808277674044	3.36752302606397	3.91505936128721	-0.631463324484099	0.29560652483767	0.692574399499983
Merged-chr13-113484324-4	chr13	113483827	113484827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	18517.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.53079135809262	4.87536133753005	5.31593130964019	5.41360189948793	5.25739562828367	5.00280913893777	-0.0574258474026655	0.886969846039388	0.973794308941933
Merged-chr5-101959640-4	chr5	101959152	101960152	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	110269.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.35726198051171	5.36883810549542	5.35249342387818	5.91609268516177	5.80876938457645	5.78530537598944	0.893336556065612	0.00480790443920298	0.0596119971058265
Merged-chr5-24781268-4	chr5	24780762	24781762	+	972.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-23419.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	4.0247167966034	3.9017905377839	4.49474046476049	4.30972786098105	4.47068980914356	4.02789701047339	0.362746914463354	0.488419802421621	0.829176645377721
Merged-chr11-87442884-4	chr11	87442393	87443393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	15302.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	6.89576306537429	6.84759292448876	6.423320177466	6.53793285429861	6.68082807399037	6.06065860586734	-0.444612345581161	0.159402092320204	0.531583074737667
Merged-chr7-118855751-4	chr7	118855257	118856257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168220)	promoter-TSS (NM_001168220)	-18.0	NM_001081446	434232.0	Mm.458509	NM_001081446	ENSMUSG00000073856	Iqck	A230094G09Rik	IQ motif containing K	protein-coding	5.80471130828992	5.98366623309961	5.86523357786949	5.92503834665601	5.37438776314081	5.49121447254963	-0.487191076861337	0.154641183044475	0.52390421792532
Merged-chr8-57576376-4	chr8	57575829	57576829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167981, intron 2 of 11)	Tigger9a|DNA|TcMar-Tigger	64486.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	4.15566181772378	3.85080505931436	3.48986003395178	4.12918643412346	3.86033740705017	3.85802775581357	0.266111025688799	0.651713064667642	0.902896807825606
Merged-chr13-60729034-2	chr13	60728534	60729534	+	823.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 15 of 26)	intron (NM_134062, intron 15 of 26)	57330.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.64038700060758	2.35937257985731	2.7443293823501	2.33811483305082	2.21622710915988	2.70010093754936	-0.931008699156312	0.298987007192449	1
Merged-chr19-44931570-4	chr19	44931044	44932044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172638, intron 1 of 19)	CpG	425.0	NM_001081225	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	7.03715769587688	7.27828094332007	7.04456307681693	6.95916556550471	6.98584905649422	6.81650308022516	-0.306230352769107	0.217852496246642	0.611901565759233
Merged-chr2-103672812-4	chr2	103672249	103673249	+	880.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88521.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	3.75200869208085	3.58149062523192	3.73206521160017	3.96057784307826	4.01486209923264	3.85499330499151	0.840690562259106	0.108716556710421	0.440527039920339
Merged-chr1-160212298-2	chr1	160211798	160212798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	594.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	8.0085112111308	8.54635308022779	8.02779755294944	7.85053927871549	8.1674491328395	7.97873730387306	-0.305785079601766	0.2370290550781	0.633445447752582
Merged-chr14-54603480-4	chr14	54602988	54603988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028890, intron 1 of 6)	CpG	2420.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	6.58799197222034	6.92336494828389	6.82798790204211	7.07104733153458	7.04712685159907	6.82621196357843	0.315335583635759	0.227962400355796	0.622981752321771
Merged-chr2-84592950-4	chr2	84592440	84593440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56540.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	6.11238554230993	5.90088523392232	5.41283191640083	5.94191221859694	5.73597580703486	5.18831459427845	-0.32480747168956	0.414596799977893	0.785897816032452
Merged-chr8-68062476-4	chr8	68061967	68062967	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-87893.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.09637709817978	2.92278801728781	2.85671638758194	3.33497672431361	2.98068217648746	3.34946793881441	1.15134134795448	0.101921811589261	0.425845347663533
Merged-chr3-28806522-2	chr3	28806022	28807022	+	897.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_026517, exon 2 of 4)	exon (NM_026517, exon 2 of 4)	1014.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	5.49590290119336	5.66305598312374	5.10011214420107	5.5582635731392	5.60657794376495	5.30975100611696	0.0965874948764916	0.791842777586013	0.94981786289531
Merged-chr13-41484467-2	chr13	41483967	41484967	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	2893.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.25869518623454	4.26419479349294	3.96771700924962	4.11604521515066	4.01743927475201	4.23136278742197	-0.174147524327716	0.719875241151284	0.927960661644538
Merged-chr5-134614542-3	chr5	134614051	134615051	+	723.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	474.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	3.47760380191511	3.53477164719986	3.7548809172179	3.46224631269956	3.34119843674708	3.16362949811979	-0.964782057066886	0.119575433459989	0.462189722861664
Merged-chr14-70075589-4	chr14	70075131	70076131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1814.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	5.51447879350588	5.34510511705372	5.28098008132422	6.09430436755729	6.10836347157556	6.05524659488391	1.26281539156623	5.80060070278622e-05	0.00178167730999423
Merged-chr2-167765997-2	chr2	167765497	167766497	+	924.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74820.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.31211367131209	6.78349764661506	6.21190391720391	6.38703174503638	6.33177438226652	6.11589965772883	-0.299229139362693	0.335896650232751	0.726012117114756
Merged-chr2-144009663-4	chr2	144009167	144010167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	1596.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	8.14947683333695	7.86158383755264	8.04535026692019	8.16948144957557	8.24616155480578	7.89482442069889	0.133696398252071	0.562871675325272	0.865755360453189
Merged-chr7-144940365-4	chr7	144939842	144940842	+	990.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007631)	promoter-TSS (NM_007631)	-417.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.0535762707927	5.74892440343614	5.72126388458282	6.35661589435088	6.31026384779628	5.99233215423872	0.653099587764476	0.036526162928416	0.235164729568836
Merged-chr7-104443686-2	chr7	104443186	104444186	+	817.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009099, intron 1 of 7)	L1_Mus4|LINE|L1	2439.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	3.93588089886828	3.91219453382579	4.32307377931	4.1590348809784	3.82330894457032	4.22243247482217	0.0320410974220957	0.951114912046766	0.988640991339789
Merged-chr11-30773059-3	chr11	30772599	30773599	+	858.694458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	1324.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	6.45327723536866	6.65578511671961	6.35301439225913	6.65044146944823	6.71971210964748	6.43274124024108	0.181787694812747	0.508896769416535	0.840113154094644
Merged-chr9-37252569-1	chr9	37252069	37253069	+	548.0	f1_c57bl6.idr	intron (NM_001145960, intron 1 of 18)	MER92-int|LTR|ERV1	3169.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	4.08985762641259	4.20068372666902	3.71148172976237	3.70054843240959	3.54015459016034	3.48881358028887	-1.45823583679535	0.0108953722633666	0.106719497974127
Merged-chr5-16552801-4	chr5	16552306	16553306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-689.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	7.00672440733995	7.24714680817654	7.02169065928218	6.75377881853215	7.24038452233939	6.6872256390335	-0.253203106632596	0.374251723277244	0.757958802250284
Merged-chr6-140620456-2	chr6	140619956	140620956	+	753.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2207.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	4.92007632804868	4.77006999607689	4.50796712047944	5.32022080056606	5.22322183655523	4.57926718837127	0.733227514414834	0.103910291214825	0.429838276142397
Merged-chr3-95644385-2	chr3	95643885	95644885	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-14336.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.55826785130078	4.63978180602129	4.99278655914877	4.95168065586451	4.3003675650506	5.17968040543702	0.264839322413314	0.584608119120601	0.874617003309743
Merged-chr19-6339223-2	chr19	6338723	6339723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168490, intron 7 of 7)	intron (NM_001168490, intron 7 of 7)	-1937.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	2.35425507896134	2.21383998123057	2.52300004338461	2.34148829846817	2.11236004640964	2.34533155429103	-0.656090012309517	0.455921022448113	1
Merged-chr8-75213931-3	chr8	75213455	75214455	+	818.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	11.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	3.83017619351768	3.91571237013264	3.60140645002537	4.00682691322728	3.56263902562358	3.36752646112225	-0.372314992683518	0.547606911842766	0.859389836719927
Merged-chr2-28698821-4	chr2	28698330	28699330	+	992.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027283, intron 1 of 4)	MIR3|SINE|MIR	821.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	5.62250248730763	5.61822258323465	5.61047433034461	5.52062324038583	5.37036076413053	5.41285032151146	-0.34778149044082	0.281534175716409	0.67967073158435
Merged-chr8-39602187-1	chr8	39601687	39602687	+	594.0	f1_balb.idr	intron (NM_001113326, intron 8 of 9)	intron (NM_001113326, intron 8 of 9)	40491.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.93271335028942	3.99037771959043	4.04672434621836	3.82974626570678	3.98643304813346	4.06826213674887	-0.0759055482592111	0.87879781193196	0.972000507462599
Merged-chr18-69416298-4	chr18	69415795	69416795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	70135.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.78130389272153	6.68525877222906	6.69930158181499	6.36485814343254	6.30892984182683	6.45388911296423	-0.565343440981266	0.0293754237439513	0.206076237997361
Merged-chr1-182755189-2	chr1	182754689	182755689	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6009.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	2.14913046694075	2.15417108481227	2.48551607670491	2.19556782397549	1.98030675509091	2.24636765557107	-0.890031896136491	0.339290012853645	1
Merged-chr12-76306349-4	chr12	76305858	76306858	+	977.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 21 of 27)	intron (NM_138745, intron 21 of 27)	-18533.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	2.82878262168113	2.84362593644937	2.92643839649829	2.92556644473357	2.83766917850038	2.81588907872149	-0.016418392895115	0.981202207017494	0.995687678606673
Merged-chr16-95723734-2	chr16	95723234	95724234	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	21327.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.3466493114747	4.40191969302758	4.26192645661498	4.24038108850082	4.2752462625207	4.18931276363891	-0.277534235199007	0.538811158370601	0.855482662171341
Merged-chr1-45861781-4	chr1	45861295	45862295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	63799.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.7035040662904	6.67897069744302	6.79220863108635	6.59674000150095	6.74698937919699	6.52417203099376	-0.139187956319322	0.589384843384098	0.87684682813475
Merged-chr9-123769646-4	chr9	123769142	123770142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	2431.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	5.87554843397952	5.93903174711735	6.13760966314586	5.5254088742584	5.4370988732745	5.80220967872887	-0.720477632959333	0.0252451546085408	0.188107712426566
Merged-chr16-55734527-4	chr16	55734019	55735019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	87619.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.20778721753861	6.37983334916929	5.65150189728424	5.61479648536968	5.40659355025631	5.36783438896812	-1.18324258818866	0.000831170210032317	0.0155976569319732
Merged-chr11-31812389-4	chr11	31811898	31812898	+	989.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	12149.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.86680017843887	3.70225204443471	3.53157726774988	3.99957832062942	3.38033876135537	3.71663333505057	0.0411723026822407	0.945847142820208	0.98796006280508
Merged-chr10-87718782-4	chr10	87718274	87719274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-139491.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.19720361136158	5.48006994680775	5.50801101035758	5.29197179799139	5.432758410909	5.36660946193511	-0.0591421052867607	0.864330009449426	0.968269312109804
Merged-chr11-23657935-4	chr11	23657431	23658431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-7743.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	6.20841132330266	6.46466465726377	5.95873130808308	6.52072095442001	6.33182974929035	6.37238455003627	0.279145795153218	0.349805158728286	0.737846979503733
Merged-chr18-9513393-2	chr18	9512893	9513893	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_F3|LINE|L1	-63239.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	2.95200005134846	2.5099731182943	2.83660857656531	2.59841211948326	2.47142012022243	2.72810451231457	-0.984377328164316	0.221545852059414	0.616307955540093
Merged-chr19-37435482-4	chr19	37434986	37435986	+	957.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	CpG	645.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	6.71475496809324	7.07557605078318	7.36704253606015	6.85043848776415	6.98502069492392	7.11431310911468	-0.133284313009564	0.638994533702869	0.897847437626511
Merged-chr15-11996059-4	chr15	11995570	11996570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011294)	promoter-TSS (NM_011294)	-63.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	7.72778377971594	7.91086511036697	7.4265813186081	7.56929968481798	7.7019207194383	7.32393812813499	-0.235889201440485	0.358281187904404	0.744602774931622
Merged-chr1-161520210-5	chr1	161519761	161520761	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25604.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	6.63666442699776	5.96522622692836	6.14354707233751	6.3759077843404	6.26829947092005	6.40581258060348	0.098918775318474	0.758066911993047	0.940048180528243
Merged-chr11-103178320-4	chr11	103177804	103178804	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	7166.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	4.10396938982318	3.73436051486227	3.90775900567231	3.69619223586243	3.58326418282584	3.66777372933177	-0.912247214504891	0.0945675523797357	0.409952075987455
Merged-chr6-49412854-1	chr6	49412354	49413354	+	774.0	f1_c57bl6.idr	intron (NM_029916, intron 6 of 23)	RMER15-int|LTR|ERVL	17250.0	NM_029916	77485.0	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	2.97036010842873	3.08811136344095	3.00677201047619	3.37638945287707	3.22098354659702	3.47935315783101	1.42892221144931	0.0295551603676343	0.206814042878657
Merged-chr16-91561241-4	chr16	91560734	91561734	+	841.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 5 of 6)	intron (NM_008338, intron 5 of 6)	14140.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	5.72372811271605	5.38906827107289	5.75188358026012	6.04872825254862	6.1842413010949	6.09529162588613	0.867966878622835	0.00557816997666615	0.0662123206017742
Merged-chr1-95314909-4	chr1	95314417	95315417	+	994.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	1289.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	7.21395711484901	7.53201976838635	7.09999862214204	6.88842509464504	7.48207620009826	7.03723469417556	-0.192408748492838	0.50639944275412	0.83842879061576
Merged-chr11-117990172-4	chr11	117989674	117990674	+	969.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3317.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	5.79042228761323	5.66696264846265	5.2708102588764	5.6957453346607	5.58948747016364	5.40344379005935	-0.063235427925248	0.856862251813372	0.966628636076984
Merged-chr3-61366442-2	chr3	61365942	61366942	+	661.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	1935.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	4.86001694039394	5.05014086043144	5.08657117404553	5.33986996497149	5.48956059654305	5.57236751822269	0.953083938041653	0.00737353726797103	0.0811879434952141
Merged-chr8-85482024-4	chr8	85481521	85482521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10596.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.70980701781547	4.78664385651989	4.97050093374853	4.57281054124587	4.39640550203239	4.67577387726156	-0.656823476012348	0.114679529226361	0.452186398382538
Merged-chr4-147127284-2	chr4	147126784	147127784	+	556.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-48582.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	2.9614013172831	3.18025623485529	3.20308699913362	2.85254064675565	3.19849822167766	3.38076558533867	0.176123453334576	0.801734896535904	0.953083301080086
Merged-chr1-156424328-2	chr1	156423802	156424802	+	808.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-3387.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	2.56457328156355	2.61695927018694	2.80375690920189	2.34465383116053	2.34857424810133	2.76037997813183	-0.984505629997153	0.24552651923999	1
Merged-chr2-70877537-4	chr2	70877010	70878010	+	992.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52030.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	6.15827285017982	6.05326559268339	5.79507615067176	6.21085015649502	6.44736536226971	5.74554670075706	0.277650888033205	0.411654443727111	0.784017205335022
Merged-chr6-71487056-3	chr6	71486557	71487557	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6820.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	3.79139507775128	3.78166741813041	4.05921292838572	4.0614967795343	4.09076242003853	4.57257724248465	1.09503326146813	0.0363448909194183	0.234602958693481
Merged-chr11-83534860-4	chr11	83534365	83535365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4347.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	7.52171893595025	7.15966818354406	6.81314439592101	7.13780987172144	7.51220652683599	7.11957362008808	0.10284904733423	0.728074460697869	0.930391495870939
Merged-chr10-77904918-2	chr10	77904418	77905418	+	833.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-2382.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	2.55599504534834	2.67536663651278	2.68694573387933	2.62005522177012	2.59390018485669	2.75981955995869	0.0911536066645362	0.903335725738847	1
Merged-chr15-100041768-4	chr15	100041238	100042238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	3074.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	7.60249989370513	7.58250894124294	7.54344304698018	7.32445334812282	7.79614720982277	7.19935476009654	-0.141699125925732	0.592324509784374	0.878003422897225
Merged-chr14-105262544-4	chr14	105262038	105263038	+	688.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029561, intron 1 of 7)	B3A|SINE|B2	3865.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	2.46315213314495	2.62826308576893	2.60456628114808	2.69137770690092	2.62789240030429	2.74039331768473	0.665212075564161	0.382640969019602	1
Merged-chr3-41575334-4	chr3	41574844	41575844	+	870.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	10464.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	4.9978982801223	5.01285363394289	5.26405881082736	4.95668474183845	5.18234650591009	4.80933851019979	-0.178574207881843	0.645680778006444	0.900684093484663
Merged-chr17-88557257-4	chr17	88556758	88557758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 9 of 21)	intron (NM_028658, intron 9 of 21)	27134.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	3.99918649512216	3.67504108971186	3.66585973420089	3.70958587836004	3.72487139019734	4.03469908920481	0.0950491807184577	0.863591824246097	0.968269312109804
Merged-chr4-126489934-4	chr4	126489407	126490407	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153177, exon 18 of 18)	3' UTR (NM_153177, exon 18 of 18)	-21324.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	3.47042799472651	3.14523270666072	3.13487157922448	3.2827353834732	3.08402821980615	3.4892114647782	0.104103275387898	0.875013001885148	0.970842352575132
Merged-chr16-91851036-2	chr16	91850536	91851536	+	968.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	80594.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	7.28300286038741	7.42246207190698	7.3611224828119	7.23295747847489	7.28695736760536	7.17561521064222	-0.179969625008713	0.433447665493503	0.797815674529737
Merged-chr8-68391262-3	chr8	68390760	68391760	+	873.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	22801.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	2.96031265195402	3.09625923958618	3.26738108703068	2.86375220825038	2.76945680990671	2.75110095354661	-1.54603474658014	0.033524795630771	0.223573871511196
Merged-chr11-22843046-4	chr11	22842557	22843557	+	915.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	16678.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.74079285882941	6.62065369922578	6.61705454122079	6.82653759375483	7.08598949835887	6.57076923648228	0.305907636135986	0.267048847122831	0.66453138559114
Merged-chr15-99295106-4	chr15	99294641	99295641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018786)	promoter-TSS (NM_018786)	-100.0	NM_018786	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	5.11789856823117	4.77145214243227	4.8338977703109	4.79950992944531	4.55789886227958	4.70410466655884	-0.534057789987832	0.191628108760638	0.578324749691893
Merged-chr4-59565990-4	chr4	59565498	59566498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-15565.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	5.28408798472881	5.28891384796051	5.40737656268544	4.73915370708782	4.82493410083847	4.99824521774343	-1.00174734724227	0.00661491098304611	0.0749780020538483
Merged-chr7-126780776-4	chr7	126780216	126781216	+	745.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-767.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	4.50597268397173	3.79671986864401	4.38409339725394	4.19265253790002	4.11192955838294	4.28018588933566	-0.192324249050831	0.715414318445877	0.926392907650078
Merged-chr6-8510408-4	chr6	8509974	8510974	+	805.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133236, intron 1 of 7)	intron (NM_133236, intron 1 of 7)	874.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	5.52336423049845	5.15686757732797	5.35334155381996	5.33859743016763	4.76783950626796	5.01897693680766	-0.598597598350842	0.131240850032793	0.484227059663384
Merged-chr7-89236823-4	chr7	89236331	89237331	+	780.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	101956.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.88718085812609	6.01744348302033	5.6511278594662	5.72117769210302	5.67425325402878	5.6577786784146	-0.336299480003487	0.286140849151683	0.683463892237707
Merged-chr10-69308095-3	chr10	69307598	69308598	+	646.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER30|DNA|hAT-Charlie	44814.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.40442353887241	4.32016627165333	4.61305553859803	4.66457968389921	4.66296265583952	4.71737969331815	0.586157998508677	0.164527880974078	0.539123991728306
Merged-chr9-35112358-2	chr9	35111858	35112858	+	806.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-4370.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	3.77079884509173	3.59383630501684	4.01546729929965	4.1594829242782	3.95819035504715	4.08388747077912	0.839471089994767	0.110695809641453	0.444642864042771
Merged-chr17-5977646-2	chr17	5977146	5978146	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2060.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	3.78094150670558	3.73831610694079	3.96335219240563	3.92658555665297	3.91234163644933	3.83519618911428	0.22286485999722	0.664976750955141	0.907721942545399
Merged-chr4-145139983-2	chr4	145139483	145140483	+	857.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276465, intron 24 of 69)	Lx8|LINE|L1	50683.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	3.6705742410383	3.78983678160157	3.67119250212491	3.66285696333369	3.81158295944845	3.79326946732033	0.146321666530836	0.784081223374729	0.947434735607995
Merged-chr19-29462061-2	chr19	29461561	29462561	+	946.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	B1_Mm|SINE|Alu	51142.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	7.35281696975184	7.13731577938604	7.2969710009761	7.32706788254687	7.22693166340662	7.23928234896298	0.00157589892950514	0.99463527015067	0.998961028701257
Merged-chr8-70718538-5	chr8	70718077	70719077	+	997.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195253)	promoter-TSS (NM_001195253)	34.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	5.00653814261041	5.00044796000026	5.42184737556644	4.65054371013064	4.6383857553106	4.86554055470419	-0.953653990899251	0.0183391203780382	0.15277500957987
Merged-chr15-78258439-4	chr15	78257945	78258945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13634.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	8.59553415444411	8.62658751725145	8.25790067698373	8.45478400212399	8.69526053395977	8.33875366514853	0.00133176894953507	0.995424407323966	0.998961028701257
Merged-chr16-3895678-4	chr16	3895190	3896190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153801, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	11071.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	6.05381605830106	6.19677983534376	6.49548451724644	6.30340596060785	6.35009428777145	6.75509174386312	0.368933764132265	0.22942390991549	0.624976418276251
Merged-chr2-165318622-4	chr2	165318132	165319132	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2194.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	8.33059352486054	8.53536408617777	8.29911088190392	8.16118751583227	8.57967963667779	8.02554117015107	-0.150906020389258	0.541875534131175	0.85701585686177
Merged-chr4-150473775-4	chr4	150473176	150474176	+	952.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	178498.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	7.16671726936037	7.37942857997923	6.67621766246946	6.29838378320593	6.64168241214279	6.20122721247021	-1.10627601544328	0.000446981027862192	0.00961789432799516
Merged-chr8-79407400-4	chr8	79406876	79407876	+	673.299988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-7908.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.35799548585274	3.58489867910285	3.88603894244828	3.94996181908074	3.66784425752307	4.04556017949755	0.892176870999999	0.127582618730818	0.4774836746887
Merged-chr4-53082088-4	chr4	53081594	53082594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013454, exon 16 of 50)	exon (NM_013454, exon 16 of 50)	70214.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	6.06221688184266	5.72992936915286	5.90888140954996	6.15047099915712	6.40478579133004	5.64375596465493	0.365422403667568	0.293248448990881	0.690199330852636
Merged-chr17-21707701-4	chr17	21707224	21708224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008501)	promoter-TSS (NM_001008501)	-17.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	6.08302362148357	6.66065784619157	6.68833723879017	6.06090366683663	6.25720212775338	6.06713978617693	-0.603519053337267	0.0583102974480635	0.312055552011159
Merged-chr16-32159177-4	chr16	32158667	32159667	+	888.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	6427.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	4.71062783935802	4.57602431956526	5.14365409338893	4.70081970868906	4.58541558546444	5.47591109388326	0.326994813050972	0.503131276749077	0.836805598267749
Merged-chr7-109959757-4	chr7	109959255	109960255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	667.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	8.05674969324864	7.98448763682633	8.01107088257394	7.91008316615704	8.00133281759035	7.73571821396243	-0.177167805709188	0.414090022886618	0.785615201854629
Merged-chr3-105054060-2	chr3	105053571	105054571	+	753.099976	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030249)	promoter-TSS (NM_030249)	-925.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	4.59065033214033	4.14318884324966	4.88060801547132	4.36093416028891	4.66173620049159	4.5816044099709	-0.0522865922667654	0.913906153607036	0.980811835491594
Merged-chr16-16558087-3	chr16	16557625	16558625	+	854.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2094.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	4.53036307591746	4.57023419673567	5.03543593649082	4.38827586011758	4.50366369950358	4.80268882842187	-0.362390292924296	0.42324443958169	0.791868419997774
Merged-chr5-9107502-4	chr5	9106992	9107992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	6755.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	3.98768400885957	3.78507884575321	4.09105475374588	4.35820583469793	3.95244703293781	4.45739738973858	0.884865763930164	0.0867411220892518	0.390201399513568
Merged-chr5-90363249-2	chr5	90362749	90363749	+	602.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	2936.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	3.03680795947513	2.81103396031326	2.76837157620853	2.82211054440529	2.8128386144096	3.13932227506284	0.226829941942083	0.75553880172461	0.939330014938602
Merged-chr12-3235386-4	chr12	3234899	3235899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-392.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	7.98897582609286	8.01157572031889	7.6048245615356	7.90975427152221	8.118989778516	7.40288253606133	-0.0459472324754174	0.869753240613675	0.969901645415424
Merged-chr17-31296189-3	chr17	31295582	31296582	+	918.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001242427)	promoter-TSS (NM_001242427)	-142.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	6.33453282179387	6.49840418164906	6.61321480411547	6.81908680748698	6.94376038637243	6.68866192012277	0.550486971181398	0.0377256326359386	0.240137273590206
Merged-chr9-59741906-2	chr9	59741406	59742406	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172069, intron 1 of 2)	MIRc|SINE|MIR	8743.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	4.45904272456492	4.66257501661088	4.90905749412242	4.77017004093783	4.66575791587185	5.00630632209656	0.307230392337831	0.468646246291358	0.818694631884688
Merged-chr17-17877225-2	chr17	17876725	17877725	+	847.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_013521, exon 2 of 2)	exon (NM_013521, exon 2 of 2)	6714.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	4.23184395707176	4.1762098239796	4.63441398200799	4.55995215949877	4.3305131614357	4.90670094909961	0.643250217106843	0.181492190022453	0.563787133106409
Merged-chr4-33246903-4	chr4	33246401	33247401	+	897.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033225, intron 1 of 1)	intron (NM_001033225, intron 1 of 1)	1886.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	7.94646990577001	8.28800281883424	8.00377966012193	8.31573780620325	8.7113053757933	7.99015650014157	0.407838038929867	0.129889365769346	0.482062192102398
Merged-chr17-35439062-4	chr17	35438558	35439558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201460)	promoter-TSS (NM_001201460)	-97.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	6.14225236037321	5.42186422154085	5.12491878877192	7.01261208221727	6.87282558371813	5.96855394925437	1.76871127986091	0.0300900597167638	0.209457363340963
Merged-chr6-82993102-2	chr6	82992602	82993602	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B3|SINE|B2	40369.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	3.66475761153176	3.68347742783045	3.25371597022101	3.62493952229849	3.61529788238038	3.62391342325563	0.221946598259511	0.712708754026627	0.925266716922386
Merged-chr3-146521201-8	chr3	146520727	146521727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027332, exon 1 of 5)	exon (NM_027332, exon 1 of 5)	196.0	NM_027332	70285.0	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	7.90343371334055	8.14594930912979	7.93836078832388	7.99063026709856	8.07818763505556	7.78927611328416	-0.0551612647307748	0.807404247738225	0.954557080558103
Merged-chr6-54939938-4	chr6	54939428	54940428	+	888.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	31733.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.58120712738304	4.35821655884503	4.58566524098985	4.53293499760541	4.45654532006576	4.61193393078287	0.0536568419346433	0.900175819494893	0.976728292075907
Merged-chr3-40947915-2	chr3	40947415	40948415	+	903.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2716.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	2.19939697827378	2.55588614254292	2.52827096238808	2.55756314442231	2.32838672642832	2.60248810494219	0.368983056615683	0.671181364075987	1
Merged-chr2-144265398-2	chr2	144264898	144265898	+	596.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_030762)	TTS (NR_030762)	804.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	7.23831243423828	7.11175290180449	7.27804683286374	7.14018598498044	7.58565934087582	7.09037604469699	0.141851268473957	0.591820000402436	0.877776841651413
Merged-chr17-55761228-4	chr17	55760722	55761722	+	990.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139138, intron 2 of 16)	MERV1_LTR|LTR|ERV1	11238.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	5.15710441535029	4.91041763203543	4.88703865816542	4.95600116423493	5.15774095802806	4.61944390770697	-0.10648141839778	0.796280105366732	0.951410019719943
Merged-chr19-12564406-4	chr19	12563924	12564924	+	836.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-9086.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	3.66878819900471	3.60133377527953	3.52961789941048	3.81999585578443	3.60419017014074	3.48651243325369	0.149525376736006	0.79164190191493	0.949797147757395
Merged-chr5-129887420-4	chr5	129886913	129887913	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024166)	promoter-TSS (NM_024166)	57.0	NM_024166	14004.0	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	6.34125020650077	6.67947605026142	6.63213848603374	6.52584436552035	6.16846351577059	6.39630453246479	-0.309960594577163	0.283366236458467	0.681317011102843
Merged-chr5-137079990-4	chr5	137079491	137080491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7719.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	4.04542587397555	4.02003703760633	4.48247294493847	4.68109516789275	4.16433597314329	4.05203468454867	0.373141560468665	0.478158811469654	0.823624523176113
Merged-chr11-94390109-2	chr11	94389609	94390609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 1 of 30)	MIRc|SINE|MIR	2867.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.95733788963082	6.27477001469044	6.29407063197941	6.08064017385867	6.14349354191092	6.06421649081231	-0.137143585765762	0.641111672233254	0.898770428668406
Merged-chr5-45919818-4	chr5	45919312	45920312	+	879.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Arthur1|DNA|hAT-Tip100	12597.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	4.16867771443976	4.13749478102628	4.21697784039684	4.59347894733935	4.35011355534447	4.69816598263651	0.979535257762895	0.0313012084495259	0.214204371467074
Merged-chr10-67062051-2	chr10	67061551	67062551	+	822.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	34937.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	5.63972804842314	5.6405143970848	5.82955084483203	5.69237562689653	5.65785370399404	5.54864914249827	-0.110935778154465	0.725543334828523	0.929698613727862
Merged-chr19-34878061-4	chr19	34877566	34878566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023792)	promoter-TSS (NM_023792)	-149.0	NM_023792	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	5.87899100969671	5.75565034095682	5.8779843434121	6.02968148049042	6.0443182475529	5.9151147998174	0.292694681391999	0.321842548796581	0.715274433767786
Merged-chr1-87853980-5	chr1	87853490	87854490	+	737.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_136921, exon 1 of 2)	non-coding (NR_136921, exon 1 of 2)	309.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	6.3355157711054	6.0454643223928	6.30213030007835	5.74722412818104	5.40474204569543	5.60441937789133	-1.14110285735921	0.000326214234323762	0.00746319329381678
Merged-chr4-53080379-4	chr4	53079857	53080857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 17 of 49)	MIRb|SINE|MIR	68477.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	6.29858548104161	5.71519486680513	5.66179993809351	6.4327058239047	6.55191017698905	5.53486661423033	0.54437941309155	0.18479309335369	0.568693903493971
Merged-chr9-88710006-4	chr9	88709510	88710510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9577.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	7.52031361649232	7.7534349455103	7.07978917864657	7.32773554599704	7.59162284636821	7.19098907017514	-0.150631848674338	0.594442348979502	0.87905784425982
Merged-chr4-47272935-2	chr4	47272435	47273435	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64923.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.09493907424417	3.89528506342754	3.79480252444616	3.61030673480673	3.82087539980141	3.7595202715483	-0.647094531468377	0.227845753333766	0.622974105854565
Merged-chr3-107130809-3	chr3	107130317	107131317	+	709.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29250.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.5434220066476	4.3759558664869	4.50475632382006	4.70335151760652	4.78573728339397	4.61411287223825	0.56745995880661	0.17268613201467	0.551282299348207
Merged-chr3-14913502-4	chr3	14912999	14913999	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27211.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	5.80201025366927	5.71827101326266	5.9064490407353	5.61425942248951	5.68272305730719	5.39772227170951	-0.410717772415837	0.201935361085998	0.591579675571021
Merged-chr15-84183823-2	chr15	84183323	84184323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054088, intron 7 of 7)	RSINE1|SINE|B4	-8410.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	6.16519622179606	6.51453749115166	6.77975004971774	6.92775922803468	7.11463389710096	6.79347968093732	0.716350305114114	0.0145419500379193	0.129870835972437
Merged-chr10-98954755-4	chr10	98954132	98955132	+	976.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	39480.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.29447969840611	6.16162263116431	6.17523106671537	6.04526871866497	5.94061274105729	5.89256943575673	-0.42864945630265	0.134796326692731	0.490730344393104
Merged-chr9-50761711-4	chr9	50761218	50762218	+	918.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311073, exon 4 of 4)	3' UTR (NM_001311073, exon 4 of 4)	4215.0	NM_001311073	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	2.72470509047277	2.52852789542703	2.3897051191465	2.72407273425647	2.59406604778676	2.7303491750282	0.686058367471429	0.398606251803138	1
Merged-chr17-86961729-3	chr17	86961199	86962199	+	897.0499880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1412.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	5.39635697972409	5.45762434962361	5.0778868644419	4.50855845168216	4.25269138765581	4.45385709334625	-2.13784868013861	2.66438845509079e-07	1.6859196545338e-05
Merged-chr7-136331557-3	chr7	136331069	136332069	+	887.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040459)	TTS (NR_040459)	17846.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.06985865824032	3.94736042572146	4.19953025303911	4.38543935047924	4.25249535876099	4.31201080429075	0.68905158678683	0.14135202929066	0.502119843364898
Merged-chr2-27710763-6	chr2	27710182	27711182	+	775.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290482)	promoter-TSS (NM_001290482)	99.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.327976996725	5.78430509897269	5.73148975474438	5.55733305880184	5.37630077514458	5.61168560011134	-0.21849820509647	0.529894026787314	0.85106707928144
Merged-chr11-120730871-2	chr11	120730371	120731371	+	664.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007621, exon 3 of 8)	exon (NM_007621, exon 3 of 8)	1150.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	2.9117184518143	2.93852611473417	3.00827154101226	3.27980533944193	3.16355157893151	3.36645121075592	1.42637950528762	0.0315172645510197	0.215063846872335
Merged-chr9-56079797-4	chr9	56079296	56080296	+	877.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10180.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	4.11988977924203	4.01658697493862	4.19099083815943	4.15167582744792	3.56817164458294	4.25835700151884	-0.252460144699791	0.649852638318921	0.902373685049826
Merged-chr2-51933766-3	chr2	51933215	51934215	+	727.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355607)	promoter-TSS (NM_001355607)	-380.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	3.62002791152	3.88499315304107	3.87987583712537	3.76123608403163	4.02395645995545	4.08918941433584	0.514906871449629	0.332688656577812	0.723759614529559
Merged-chr1-171060482-3	chr1	171059999	171060999	+	877.3999630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR9B|LTR|ERVK	-1096.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	5.67335937602176	5.44205666878283	5.60518693243936	5.2927167499263	5.33295462995141	5.74317236964732	-0.220902506897392	0.526955037298506	0.849710825989052
Merged-chr18-6145088-4	chr18	6144569	6145569	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8971.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	5.33962293541301	5.31983226751641	5.45192911909814	5.20591662578622	5.38917374229864	5.88549669296221	0.281949021067977	0.44883320436328	0.807454029128485
Merged-chr16-8767136-2	chr16	8766636	8767636	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-28794.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	4.22536249592518	4.39693192615042	4.69434661642114	4.74417330695371	4.37247915954965	4.30266033838041	0.116115141512272	0.805526677640476	0.953956034266138
Merged-chr17-17893467-4	chr17	17893033	17894033	+	863.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008039, exon 2 of 2)	exon (NM_008039, exon 2 of 2)	5709.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	5.49919516229158	5.71897675075429	5.51106166642748	5.50059987620192	5.64629121883739	5.73627329439285	0.0793822724935628	0.807644732192063	0.954557080558103
Merged-chr5-134454922-2	chr5	134454422	134455422	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	1340.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	4.88926706502489	4.85530987545799	4.98359791590918	4.93036021518581	5.22700769900929	5.0483330877245	0.378950426055143	0.315526352674442	0.709834518424648
Merged-chr11-115510088-1	chr11	115509588	115510588	+	1000.0	f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	4305.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	3.0031373280741	2.8625244530621	3.23121265642147	2.87602691334321	2.86374481492705	2.9656959019586	-0.635711613484414	0.362962421698063	0.748522285730455
Merged-chr5-135188825-2	chr5	135188325	135189325	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	1502.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	4.81341055577498	4.81079655877443	5.43479879157362	5.14858243433989	5.33107011232126	5.29819852703099	0.463118581995843	0.252403606007339	0.649835540406508
Merged-chr5-139791465-4	chr5	139790981	139791981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-55.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	8.4721749224035	8.72386304753518	7.94988089280756	8.21125647926566	8.28403984766879	7.91510010040663	-0.388902410782992	0.156508888639391	0.527153157622508
Merged-chr16-19969639-4	chr16	19969154	19970154	+	947.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	13395.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.60520642291974	3.82317441130488	3.71362735177109	3.92470502319905	3.5196644259935	3.73163541874025	0.0473592133183286	0.932630792430298	0.985254864630157
Merged-chr17-65681122-3	chr17	65680619	65681619	+	861.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133685, intron 5 of 6)	(GGA)n|Simple_repeat|Simple_repeat	-38915.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	3.23164396771457	3.18132090859888	3.43809263672452	3.53550863210026	3.36225889485118	3.39967588214775	0.599858316650898	0.323768529860672	0.717026824035101
Merged-chr3-84772065-4	chr3	84771562	84772562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43515.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	7.54881731582332	7.54702302560531	7.22301597943369	7.39163390628256	7.57736664583219	6.99800757268017	-0.144705206329347	0.593582918839724	0.878574941935994
Merged-chr2-60855211-4	chr2	60854744	60855744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	26194.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.72061699736035	6.65224463733966	6.83982257125468	6.9448817950892	7.07506512836003	6.77735292639558	0.329077195075813	0.197708198774812	0.585816672731807
Merged-chr4-120053796-1	chr4	120053296	120054296	+	830.666687	f0_c57.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107410.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	7.42035034326579	7.31783054426023	7.06487467829457	6.60524599608984	6.74384044057385	6.67835732249162	-0.923154327141464	0.000277223634684207	0.00652431845562914
Merged-chr3-55113177-7	chr3	55112666	55113666	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	1000.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	7.26979915117427	7.6778493531887	6.91512255437251	7.46693555262513	7.83165536463546	7.2380276585392	0.304302144588712	0.323573266106642	0.716793539347754
Merged-chr8-53505682-4	chr8	53505162	53506162	+	854.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6040.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	3.51401180862493	3.60217826187173	3.76140487358118	3.47819195577402	3.64038844432235	3.51969492073708	-0.252508950446915	0.656169127008444	0.904578029757755
Merged-chr19-40671418-3	chr19	40670894	40671894	+	844.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	11624.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.00365759992217	4.93124931367786	5.12010756409134	5.05674464440589	4.84809620997597	5.33562868927006	0.141020700695075	0.716394116108412	0.926569584146506
Merged-chr14-103034798-2	chr14	103034298	103035298	+	624.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-995.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	3.28162321732003	3.17130765828594	3.068339860364	3.39044194566406	3.33391610584021	3.32240602041697	0.684177881695816	0.275446148639274	0.672930007809293
Merged-chr15-83349042-2	chr15	83348542	83349542	+	614.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357756, intron 1 of 15)	intron (NM_001357756, intron 1 of 15)	1205.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	2.80025053743542	2.78611967829368	2.63802680927168	3.13081838959464	2.58303441196691	3.02936512229894	0.929868044984125	0.239132351787243	0.635872578534862
Merged-chr2-126466857-3	chr2	126466291	126467291	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	24762.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	3.04298263286396	2.80541842514622	2.82669319991845	2.49463521689019	2.64085422802436	2.64730295733206	-1.66971754978759	0.0349325501192463	0.22926862520289
Merged-chr2-30246725-4	chr2	30246233	30247233	+	811.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8964.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	5.92457626485003	5.84847116399185	5.51041994889643	6.44961302503283	6.46659275314131	5.67075683862803	0.814822126457208	0.0258243337506869	0.190546347674661
Merged-chr13-51846170-1	chr13	51845670	51846670	+	1000.0	f0_c57.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-505.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	7.20008799531833	7.42781347076278	7.17641753889379	7.5161132544182	7.76406377354552	7.67576657376715	0.556499097681993	0.0193290949048318	0.157891960179678
Merged-chr1-165710126-3	chr1	165709600	165710600	+	756.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2006.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.32851631144559	3.16390075050523	3.12380095914553	3.26967086900779	3.30603359266559	3.3140944223759	0.344787229211371	0.58050436947687	0.872884157869997
Merged-chr1-91414230-5	chr1	91413766	91414766	+	833.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360900)	promoter-TSS (NM_001360900)	-228.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	3.71184786288911	3.50003994263686	3.55279879137755	3.72687564791303	3.51430108851956	3.45408627928513	-0.0736019434489998	0.897940428800738	0.976213110836171
Merged-chr5-64701946-4	chr5	64701471	64702471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A_|LTR|ERVL	-91272.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	6.06999005386602	6.34877749288608	6.91083011018281	6.88678610748169	7.25696245447572	7.1083232267939	0.954809939917248	0.0031096779737692	0.0432837211176627
Merged-chr16-10521343-4	chr16	10520812	10521812	+	923.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007575, intron 15 of 18)	intron (NM_007575, intron 15 of 18)	21742.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	2.42751634177658	2.11527142102061	2.09424796557035	2.31495662906848	2.18435160058211	2.5668116202077	0.907111035009826	0.336686831506822	1
Merged-chr1-36307247-4	chr1	36306756	36307756	+	971.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-477.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	5.06702350041846	4.76751016332179	4.98853649492541	4.98735657274673	4.89392342596212	4.57705637323282	-0.231163545177688	0.570774087767557	0.869261481348614
Merged-chr1-191403310-4	chr1	191402830	191403830	+	872.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6289.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	3.05068461487196	3.27918015271589	3.21056722055744	3.00324250177384	2.76700134684534	3.11171887234912	-1.02108357729462	0.144048877688205	0.506679870421043
Merged-chr1-34465669-4	chr1	34465178	34466178	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	5932.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	6.21486208650212	5.5877108025012	6.21327712921858	6.13120518610445	6.11297418712746	6.48950824682311	0.36626886663282	0.285117372971639	0.682707750175219
Merged-chr7-141534447-2	chr7	141533947	141534947	+	797.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026522, intron 1 of 10)	PB1D10|SINE|Alu	5410.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	3.28562646206696	3.09626907715366	3.1111979151455	3.06096145326737	2.84396689244822	3.12500063379133	-0.722228821344324	0.286725386025337	0.683987960229425
Merged-chr11-17165471-2	chr11	17164971	17165971	+	552.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024459, intron 1 of 5)	URR1A|DNA|hAT-Charlie	6173.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	3.45867134239543	3.60215253159866	3.38322585153981	3.58732353161979	3.14612228483459	3.39808749129702	-0.379849134788356	0.543426622241492	0.857551302506722
Merged-chr18-25548585-4	chr18	25548065	25549065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	131183.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.00917424195329	2.95360085741889	2.92969551853209	2.88689915352552	2.73851288189232	2.68444759551423	-0.968187185700454	0.180843199380605	0.562948033447864
Merged-chr2-166001578-2	chr2	166001078	166002078	+	954.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	8941.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.86283547890549	5.00100421728323	5.14748607222266	5.02988658215143	5.16493028536433	5.04378168689877	0.180342561483763	0.627704459100669	0.893339236443994
Merged-chr6-84121019-2	chr6	84120519	84121519	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 30 of 54)	intron (NM_001077694, intron 30 of 54)	101633.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	2.54171969131539	2.62564690668796	2.75180721434109	2.56889505469991	2.51813888758459	2.51348492166255	-0.607400599352427	0.432467554854483	1
Merged-chr19-11807449-3	chr19	11806947	11807947	+	966.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	11956.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.18168335620533	5.17981427639497	5.2455842551975	5.06938800903848	5.00808383640351	5.27790163434862	-0.180477774817663	0.615112594294222	0.887772023929758
Merged-chr1-36253030-4	chr1	36252535	36253535	+	913.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8733.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	2.56573905838178	2.64366314274296	2.74110507158619	2.5108658519494	2.48049517351853	2.50265070070946	-0.89469128985601	0.251372406242029	1
Merged-chr6-136940594-2	chr6	136940094	136941094	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	909.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	6.86811752730568	6.81290119716657	7.18473976291473	7.27909951500239	7.4154878920689	7.26548356522354	0.557173940833369	0.0261544541021251	0.192011630221425
Merged-chr15-88732570-4	chr15	88732080	88733080	+	928.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	1639.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	5.68540863508035	5.87410117608692	6.00746197403858	6.15976206590714	5.93116805570556	6.02350163987367	0.323262765456769	0.289743107748788	0.687430963346381
Merged-chr5-120587296-2	chr5	120586796	120587796	+	858.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_145853, intron 1 of 27)	intron (NM_145853, intron 1 of 27)	1317.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	3.16890861316907	3.08550529261445	3.21721434380699	2.96858227081249	3.04819864467502	3.39460276702232	-0.056710914493637	0.932165924876644	0.985074623409702
Merged-chr7-111122762-4	chr7	111122240	111123240	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015573)	promoter-TSS (NR_015573)	-65.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	7.33139941292322	7.42592688994294	7.31984004224608	7.37865487599026	7.47284798400817	7.23727301992926	0.0166222997978028	0.942787455915497	0.987202156853573
Merged-chr1-138323252-4	chr1	138322756	138323756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49518.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	7.30936469704989	7.13740168271174	7.12501075111899	7.24910978213562	7.37960976303259	7.46348241043915	0.251403969600692	0.288009186409448	0.685370599518315
Merged-chr17-57280583-4	chr17	57280084	57281084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	1484.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	7.01824867950833	6.6232687209924	6.90613356313186	7.23004881846136	7.24321025476795	7.04710828183397	0.491549669717114	0.0580833091487838	0.311391279569129
Merged-chr2-145794688-4	chr2	145794193	145795193	+	911.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	8577.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	3.22068280801594	3.08356044093314	3.23687049957815	3.03230080116092	3.04464177404677	3.01706720032331	-0.655474188406041	0.315839999298015	0.710103428795101
Merged-chr7-118111222-2	chr7	118110775	118111775	+	847.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	4872.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	3.6388189459497	3.78057971139656	3.67644766444807	3.93357960901368	3.62534034329694	4.25815668528055	0.798788776423899	0.15866813109824	0.530447689219215
Merged-chr2-113396107-3	chr2	113395592	113396592	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-44972.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.69388195660764	4.69326509990254	4.82089052756619	4.19850363572638	3.86368237611759	4.03555114398	-1.88311179833763	6.68301968824246e-05	0.00201259754693912
Merged-chr6-123122718-3	chr6	123122226	123123226	+	795.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	36.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	5.6445918738434	5.65559022766563	6.1065165100886	5.4965830089284	5.42478247726453	5.75012771292352	-0.467081830043484	0.176167287557361	0.556364203251713
Merged-chr1-95664599-2	chr1	95664099	95665099	+	813.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2995.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.31484287103775	3.01673807013358	3.14495574221061	3.09371097092396	2.98725439729598	3.2164149563403	-0.303893910031179	0.646760359679236	0.901132552046046
Merged-chr9-21715460-4	chr9	21714951	21715951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8125.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	5.85472663536084	5.79897787673481	6.24733054684196	6.23553826403624	6.54392415686264	6.26800983725993	0.667955155420113	0.0308400210904348	0.212543449961301
Merged-chr2-45270229-4	chr2	45269729	45270729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-152787.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.9265012389853	6.85658841490638	6.84669759750267	6.9668309990855	7.14673806617624	7.0707879501707	0.286589261708332	0.236529033526806	0.632745673713476
Merged-chr5-105732668-4	chr5	105732183	105733183	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	31873.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.08798029795804	5.67532896228044	5.58819223514878	5.58588051522775	5.4272602681615	5.15960039776209	-0.743283014540298	0.0395565742287875	0.247146225744187
Merged-chr1-52231661-2	chr1	52231161	52232161	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	intron (NM_001081081, intron 1 of 17)	1571.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	5.10006150769061	5.16788251501292	5.16256454610859	5.24437688173425	5.34133183756463	5.44198957594434	0.401234175893673	0.247991456930052	0.645121275572369
Merged-chr9-90253124-2	chr9	90252624	90253624	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	Lx8|LINE|L1	17645.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.00737434018118	5.41439785991852	5.36410564369534	5.39254144988338	5.34494025540339	5.74592699850839	0.438042391204682	0.2360481339362	0.632359727255743
Merged-chr7-113378104-4	chr7	113377605	113378605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-8766.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	3.01429744519841	3.09864680588934	2.99874628878996	3.01011915277237	2.88075682873315	3.12960522430235	-0.163370667552303	0.808145252396344	0.954620911486066
Merged-chr11-116274166-4	chr11	116273655	116274655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	62.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	7.08335377112269	6.89000135236876	6.91477702994934	7.04191257274968	6.80484799131698	6.57102717941267	-0.215708782701026	0.420670127973441	0.789802348657862
Merged-chr10-7792874-4	chr10	7792358	7793358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026141)	promoter-TSS (NM_026141)	-36.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	8.29951048864957	8.55042202773352	7.94791721635592	8.44034495146644	8.50073382827509	8.08140948359986	0.0867432736153038	0.737936560712556	0.933858424870961
Merged-chr15-38693374-4	chr15	38692852	38693852	+	872.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025494)	TTS (NM_025494)	31448.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	2.78261767191298	2.892059343315	2.94870738785244	2.86149648877145	2.95132630561681	2.90129856179899	0.16319640911738	0.813984798677443	0.955984497572397
Merged-chr8-13156049-3	chr8	13155548	13156548	+	957.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3113.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	7.30992148932039	7.43007530479198	7.2884398026235	7.5477971296036	7.99192326542207	7.23662342859727	0.433582697251115	0.120729412652598	0.464753780615192
Merged-chr7-128523556-4	chr7	128523027	128524027	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013863)	promoter-TSS (NM_013863)	-56.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	7.83226955483271	8.25933651169238	7.78002880338484	7.76047722739228	7.78002459961011	7.69403596741533	-0.336824881543591	0.167929325814646	0.544130536211812
Merged-chr2-84637675-1	chr2	84637175	84638175	+	720.0	f0_balb.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	11805.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	5.51925519381143	5.27265315553182	5.58964712303562	5.79851595343552	5.68252849932017	5.67891085632235	0.490481503203559	0.134123912974249	0.48967498357954
Merged-chr16-35022921-3	chr16	35022423	35023423	+	847.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023587, intron 1 of 6)	CpG	502.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	5.33150944414536	4.92978142191652	5.03389420928575	5.08320410783227	4.76072889170463	4.95509105401904	-0.382861635943814	0.332146549067199	0.723387053255178
Merged-chr4-66828868-4	chr4	66828378	66829378	+	986.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021297, intron 1 of 2)	intron (NM_021297, intron 1 of 2)	1327.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	7.30674685533732	7.80434536534428	7.27037547012835	7.42893068596484	7.96684728192808	7.32785613061816	0.181961182306834	0.54405866983255	0.857551302506722
Merged-chr11-79287699-4	chr11	79287192	79288192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32997.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	6.7655334980874	6.67963725362992	6.57578849681346	6.63681901185489	6.85060863445752	6.84122497421967	0.156270317174818	0.544434061569007	0.857686194006474
Merged-chr5-21425276-2	chr5	21424776	21425776	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	373.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	5.33893744201693	5.4173282276843	5.03468321251512	5.09408086903568	4.98016246551262	4.59974452637076	-0.758072837588361	0.0603095839557193	0.317871657806264
Merged-chr17-35188788-1	chr17	35188288	35189288	+	681.0	f1_balb.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-348.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	6.80938761623445	6.55007386072763	6.91628139621863	6.74050303682006	6.98852081915857	6.89092239496023	0.185884142266167	0.484105480216216	0.826659185639282
Merged-chr3-51343369-2	chr3	51342869	51343869	+	892.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-2725.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	3.6200587628247	3.39521420482953	3.71317518433599	3.38872665075792	3.60028835229461	3.78183034816706	0.0631276372010355	0.914320296641453	0.980912729144991
Merged-chr18-14657040-4	chr18	14656547	14657547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25867.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	7.70286972610898	7.94676740487288	7.4869906653019	7.96376809054651	8.29017881397891	7.73209141970126	0.415645298401647	0.117046573572676	0.456832463710081
Merged-chr2-90470385-2	chr2	90469885	90470885	+	805.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 3 of 23)	MIR3|SINE|MIR	8789.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	3.05859347644998	2.97969654727464	3.40480413454613	2.95071184699921	3.31401413754645	3.02976494895167	-0.176797860786435	0.801804243026906	0.953086016975963
Merged-chr2-113445690-3	chr2	113445256	113446256	+	962.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	4692.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.52335354737961	4.20722728455612	4.37174927237198	4.00718723232775	3.77648285146729	3.92294650930156	-1.37056474900652	0.00589420115815144	0.0689020356796102
Merged-chr11-26640660-4	chr11	26640150	26641150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46730.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.44956119249969	6.6197663786335	6.28119687412042	6.66925339396641	6.94872802433756	6.75605401569633	0.530024898707639	0.0532176173682661	0.295751195809548
Merged-chr3-95283034-4	chr3	95282540	95283540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173347)	promoter-TSS (NM_173347)	105.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	7.55872788404463	8.00788957664828	7.76528363562194	7.38291338534607	7.62146397644076	7.41132413911883	-0.451807252834495	0.0693866859658901	0.344770534208156
Merged-chr2-75695835-2	chr2	75695335	75696335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_132727, intron 1 of 1)	B1F|SINE|Alu	8828.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	5.0497840090299	4.94363448330856	5.47563501692098	4.76951852261284	4.85686280026225	4.8172433035676	-0.750039399987752	0.0624046225695381	0.324636688638082
Merged-chr6-59024551-4	chr6	59024059	59025059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153574)	promoter-TSS (NM_153574)	-57.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	5.8199309442372	6.2234350300755	6.15517190003446	5.9826455833368	6.18783546507146	5.87149270512442	-0.0784628607585247	0.80283749570103	0.953400450869743
Merged-chr5-149006297-4	chr5	149005729	149006729	+	830.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-733.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	4.45700017468819	4.3291459631394	4.27177360877983	3.87721204822427	3.80821275755961	3.90450434854378	-1.46478655059172	0.00278610021878818	0.039757473333035
Merged-chr8-94387504-4	chr8	94386984	94387984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	1055.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	8.52489155462563	8.44980309742937	8.04075565896547	8.24501468041416	8.36308514129303	7.91430963355568	-0.233916925331637	0.353499184899921	0.740736914917923
Merged-chr4-109360914-3	chr4	109360408	109361408	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007943, intron 13 of 24)	L2|LINE|L2	17852.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	3.2262940559531	3.59555771022608	3.35463185066248	3.29419150942738	3.25105658651296	3.63290804191051	-0.0302879938043875	0.961988783983457	0.990694737894915
Merged-chr17-49430020-2	chr17	49429520	49430520	+	703.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	1656.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	5.06771833607626	5.14764424297024	5.68036360848082	4.98768905516771	4.72609422262262	5.2718809661085	-0.648796962328718	0.122302776021603	0.467779583548445
Merged-chr19-11602177-4	chr19	11601678	11602678	+	987.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026835, intron 2 of 6)	intron (NM_026835, intron 2 of 6)	2626.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	3.8680426560903	4.23164482498906	4.32485325158184	4.74695959500007	4.75157731979235	4.79574175474336	1.57188655625008	0.000687682385100366	0.0134996094787348
Merged-chr19-8819921-4	chr19	8819447	8820447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027412)	promoter-TSS (NM_027412)	546.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	7.73488539382871	7.82345325252881	8.04992343618366	7.78706099053035	7.81902107970189	7.90227571268853	-0.0509818022274205	0.819863663434648	0.957355184078563
Merged-chr9-108003737-2	chr9	108003237	108004237	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	1089.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	5.7765790113693	6.0223436085002	5.74822231824663	5.51227071642219	5.87917096458721	5.56077847396844	-0.340481621794524	0.30549683095889	0.701604675920959
Merged-chr17-36043565-1	chr17	36043065	36044065	+	545.0	f1_c57bl6.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	604.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	7.3602910066858	7.39966296520612	7.16968957908699	7.51637739278337	7.61720592617496	7.1499197578799	0.197812597980598	0.435986414042334	0.799430009957291
Merged-chr10-12548645-5	chr10	12548170	12549170	+	642.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	313065.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.92414359638231	3.08765063572826	2.97995131872886	2.6321506665328	2.41520066955237	2.68251403879332	-2.57955472402071	0.00255817132994422	0.0373373653783545
Merged-chr6-122571889-2	chr6	122571389	122572389	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18080.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	7.64018199757898	7.34055742863272	7.51271750473163	7.5655412063188	7.76629909856226	7.53974498573903	0.188899978122274	0.424386010392788	0.792697196836987
Merged-chr2-90524720-2	chr2	90524171	90525171	+	810.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-45497.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.77099359529957	4.60139138431336	5.01483318305979	5.00301952827955	4.69946217799131	5.11083866801742	0.319030497256413	0.441635566937084	0.802789517411278
Merged-chr1-131678222-4	chr1	131677720	131678720	+	844.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10475.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	3.04113013967472	3.08685039118273	3.13148241874703	3.36886959323947	3.27922620069653	3.20433856406723	0.86589067273048	0.17194056647259	0.550414849720006
Merged-chr7-25239394-4	chr7	25238917	25239917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1566.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	7.05255838644327	6.80075554479003	7.24475490966885	7.1329222492657	7.3488727744405	6.91794091982498	0.175585652830093	0.51982471783579	0.846048097455962
Merged-chr11-43634225-3	chr11	43633751	43634751	+	680.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32689.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	3.20252002181208	3.20374001184837	3.16905481548094	3.1285349975989	3.13533486073726	3.560893823034	0.366692334172105	0.57289571042989	0.869934493236159
Merged-chr8-75109456-4	chr8	75108943	75109943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-66.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	4.57179318769548	4.86907388966319	5.09911343346583	5.23336683983651	5.163568770721	4.80026873356079	0.501488301425141	0.226723629925072	0.621670724273559
Merged-chr9-45386950-3	chr9	45386447	45387447	+	793.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-12762.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	2.79940078190551	2.77454199057546	2.82285974006201	2.81119001322927	2.36606727474208	2.43781313022299	-1.37278225850196	0.11238705141641	1
Merged-chr11-121738726-2	chr11	121738226	121739226	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	36299.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.20355458017098	4.05758403107183	4.17008322680741	4.08811414828138	3.94202112414895	4.44752716821944	0.0569572124156511	0.908937610535178	0.979380714967749
Merged-chr2-153445019-4	chr2	153444519	153445519	+	821.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	-540.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.15040932760519	2.97925877840167	3.22873404080529	3.4208077913181	3.13288074336959	3.06250242649702	0.410412329396929	0.5365758333523	0.854055228150433
Merged-chr5-135196005-2	chr5	135195505	135196505	+	732.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	8682.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	6.44279628957324	6.76730899480683	6.47113328597032	6.78038142758066	6.93115208089607	6.75270821625046	0.397463968171966	0.139344327098088	0.498798140209838
Merged-chr4-130107508-4	chr4	130107014	130108014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026441)	promoter-TSS (NM_026441)	-42.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	7.61559613876705	7.84714688346323	7.34670032125922	7.65684839764626	7.91322730263197	7.43789129574883	0.0941873172013356	0.722620479371477	0.928872966192021
Merged-chr5-150674853-2	chr5	150674353	150675353	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175310, intron 1 of 34)	intron (NM_175310, intron 1 of 34)	1026.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	4.54118970838707	4.16001521753788	4.47913884313243	4.76175006879633	4.20993531815192	4.74123416114885	0.462671083662523	0.33755473373045	0.727422932876912
Merged-chr15-88511529-2	chr15	88511015	88512015	+	702.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88787.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	2.65660023766141	2.78852316613973	2.52195017268363	2.65175233062704	2.59709518545138	2.90811622311568	0.304417993981978	0.696407136021684	1
Merged-chr12-100777742-2	chr12	100777242	100778242	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-1315.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	4.43007474956309	4.26285735388375	4.59046506691934	4.20956425712825	3.78870464531548	4.46361163132761	-0.687365623126853	0.183089804754586	0.566085379224821
Merged-chr4-122833666-2	chr4	122833166	122834166	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2561.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.43579701998277	3.51591237314762	3.57069667882368	3.808256374989	3.74028116682741	3.53070556434204	0.693817966728078	0.217596915521522	0.61162058395145
Merged-chr12-55301047-2	chr12	55300580	55301580	+	801.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_021529, intron 2 of 13)	RMER10A|LTR|ERVL	-1557.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	3.32536230122279	3.29647998880527	3.38504423094437	3.27054859809988	3.48201770788471	3.40066771799906	0.222657329034506	0.71052081659061	0.924358113435436
Merged-chr11-101464452-4	chr11	101463956	101464956	+	865.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1743.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	6.37680633021638	6.53807140910982	6.07505886484442	6.04337477960326	5.81108698543671	5.43608418646753	-0.946770725090651	0.00514535405813214	0.0623871741340272
Merged-chr10-41923645-7	chr10	41923123	41924123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 15 of 17)	B1_Mus2|SINE|Alu	36184.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	6.5918283565457	6.95736661686647	6.65017090209001	6.71951106357112	7.03344353629492	6.75796528007234	0.160379152674561	0.56136918589455	0.865407801976397
Merged-chr3-152210916-4	chr3	152210401	152211401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356364)	promoter-TSS (NM_001356364)	479.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	8.81041877878859	9.12616213081067	8.6990107478255	8.76469653280631	8.69240871260196	8.53953169027779	-0.309098411014141	0.167893924318523	0.544130536211812
Merged-chr2-105835075-3	chr2	105834570	105835570	+	671.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023876, intron 4 of 9)	intron (NM_023876, intron 4 of 9)	69494.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	2.55905047700974	2.62122759984016	2.62950058227553	2.67218002591635	2.5118207290367	2.94102109571727	0.603897128718122	0.436852724401379	0.799681606793859
Merged-chr10-34187937-3	chr10	34187444	34188444	+	675.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	19607.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.36862694689392	6.5280058981648	6.20991233136678	6.36835229927517	6.33559847360791	6.58674891179114	0.0709016096169814	0.80111955573852	0.952769367015763
Merged-chr17-33999651-4	chr17	33999122	34000122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 2 of 7)	CpG-6270	711.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	8.04339081307621	7.90957991800754	7.5164776806464	7.98971063402138	8.26635687944879	7.92220941225174	0.316766248817927	0.21259952769491	0.60512503641463
Merged-chr8-47714140-4	chr8	47713647	47714647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-216.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	7.50185011695361	7.71032385780546	7.68400545621867	7.94712102126618	7.78438239780066	7.48870094009846	0.182311720638272	0.452786474943042	0.809457484278845
Merged-chr4-141977537-4	chr4	141977045	141978045	+	897.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-5447.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	2.6920160422895	2.79575996963316	2.91439215622871	2.92935279368481	3.08361689587526	3.10340359158875	1.18655079281454	0.0930506474558875	0.406374548333771
Merged-chr6-143073602-3	chr6	143073087	143074087	+	780.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362115, intron 7 of 26)	intron (NM_001362115, intron 7 of 26)	26565.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	5.50536569232742	5.42180948467088	4.87536213625724	5.53961306625387	5.55736068112034	5.18046634427789	0.261860992464063	0.50619429614913	0.838347465097765
Merged-chr1-149937989-4	chr1	149937519	149938519	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-15580.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.42633457354344	5.76887019547112	5.79144376330628	5.55114536364181	5.5265442751311	5.47792479478766	-0.276171337552152	0.406918359385304	0.781142268902047
Merged-chr3-135424058-4	chr3	135423586	135424586	+	967.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	-653.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	8.20175757031719	8.42348659190918	8.09623671930703	8.16740413904101	8.58923947996875	8.15905383345016	0.107265277587	0.659521700217806	0.905467486247391
Merged-chr4-141656332-4	chr4	141655825	141656825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	7790.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.78213236137553	6.44675028785658	6.61222378404528	7.1242496808887	7.10940072132746	7.10775592987513	0.760292087624376	0.0029327183674309	0.0414236285757984
Merged-chr8-124924480-1	chr8	124923980	124924980	+	935.3333130000001	f0_balb.idr	intron (NM_053207, intron 1 of 4)	MIRc|SINE|MIR	24774.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	2.83032673760637	2.9240324926101	2.76769597563947	2.59219201001201	2.40603339027923	2.51685198470722	-2.07715285764902	0.011923402709716	1
Merged-chr2-52424913-4	chr2	52424425	52425425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-51.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	7.01863408317909	7.12985302148752	7.08872410075573	7.48364401796375	7.3007099299409	7.25724606152761	0.407956250371586	0.0843043578811252	0.384210789380924
Merged-chr11-70410149-4	chr11	70409617	70410617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029231)	promoter-TSS (NM_029231)	-86.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	6.58924620834101	6.53119771385981	6.63313080246672	6.5923037677309	6.61498838608811	6.50347072155074	-0.0113282296477785	0.964854128361317	0.991681785548977
Merged-chr6-124903796-4	chr6	124903299	124904299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008479)	TTS (NM_008479)	7906.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	6.83131949376114	6.43449279636529	6.67464364735263	6.73463770415654	6.7224646417605	6.45352724448047	-0.0094655555376625	0.972928404541925	0.993897323428832
Merged-chr9-119976590-2	chr9	119976090	119977090	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357562, intron 2 of 4)	PB1D9|SINE|Alu	6433.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	3.90194737126311	3.68832877394175	3.65157058839229	4.10230174354113	3.85641561253715	3.93346239868201	0.665722826742317	0.210206965369456	0.602200074865266
Merged-chr11-113787398-7	chr11	113786930	113787930	+	843.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172800, intron 44 of 44)	intron (NM_172800, intron 44 of 44)	-35615.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.14254977106112	3.7929858818208	3.91496472996789	4.64664614780273	4.72423027101638	4.71373759052648	1.96893257976977	4.55144337020482e-05	0.00145831376059079
Merged-chr4-62397739-1	chr4	62397239	62398239	+	613.0	f0_balb.idr	intron (NM_139291, intron 3 of 3)	intron (NM_139291, intron 3 of 3)	10884.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	3.67658085207801	3.5850410390239	4.1569851068721	4.0069793719373	3.70702071078471	4.13891168985927	0.418142544794044	0.464944389170816	0.816631332252401
Merged-chr4-43559878-4	chr4	43559394	43560394	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2689.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	7.5891698307167	7.38853857240611	7.4402071254167	7.41206369848998	7.7213477530784	7.23587844953323	0.0101034444056164	0.968153911947228	0.992682259282642
Merged-chr2-158140552-2	chr2	158140052	158141052	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009373, intron 2 of 12)	intron (NM_009373, intron 2 of 12)	5840.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	4.04248854566846	4.26487542066863	4.50212344943056	4.57535527610792	3.97709611633651	4.60629947051864	0.348528431792837	0.499770850583655	0.834715972162707
Merged-chr17-62649788-4	chr17	62649291	62650291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	231526.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	2.70184821511124	2.71404313490664	2.4297879435587	2.72094810010038	2.57839429285501	2.82939706733154	0.459112018414221	0.567756495226779	1
Merged-chr4-140967141-2	chr4	140966641	140967641	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 2 of 7)	intron (NM_001355515, intron 2 of 7)	5870.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	2.61483027139337	2.50646172485386	2.9099326309637	2.50803314303218	2.52477756225324	2.75200897954541	-0.48029627100355	0.544767117833675	0.857894224757806
Merged-chr11-74501006-4	chr11	74500504	74501504	+	793.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	89154.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.30633282494279	5.13949904096872	5.64256251231723	5.3588412096387	5.58569513945806	5.30760710965219	0.126851743521259	0.727983862247224	0.930348818287287
Merged-chr18-36465666-2	chr18	36465166	36466166	+	572.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4|SINE|ID	-11171.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	5.12590957857198	5.05409833557477	4.5883260067008	5.08355543922579	4.7550336830734	4.56544301851951	-0.285310423823756	0.516250138768823	0.844051513295388
Merged-chr10-20312951-4	chr10	20312474	20313474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025392, intron 1 of 12)	CpG	505.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	8.34783461515077	8.69135993443706	8.27753874993238	8.30732032627159	8.59755126205157	8.38198492370321	-0.0259681961717392	0.911647325074769	0.980154516820379
Merged-chr1-35995418-4	chr1	35994935	35995935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72965.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.25904526219085	5.24491572700114	5.46481656473247	5.29834954038901	5.48204810789234	5.35071683995461	0.13194303159477	0.700948834123179	0.921065601246484
Merged-chr2-181240619-4	chr2	181240127	181241127	+	967.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_183162, exon 2 of 19)	exon (NM_183162, exon 2 of 19)	1400.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	5.20645748224225	4.78091916167448	5.21075997086062	6.22429787039509	6.30604069791279	6.40674432609466	2.2943045819621	1.88667968115858e-11	2.91255738237186e-09
Merged-chr17-13056357-4	chr17	13055858	13056858	+	916.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4078.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	2.40865753451584	2.50686094692107	2.74425149086265	2.59705656734478	2.51147531025751	2.30316202786641	-0.463744128444459	0.585482342072801	1
Merged-chr9-65032390-4	chr9	65031924	65032924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-34.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	8.00186520186611	7.92342175074307	7.84245084306979	8.0793220286872	8.0238796679359	7.78819952849283	0.0684973953452452	0.756914551570533	0.939748351653247
Merged-chr17-26513295-4	chr17	26512808	26513808	+	972.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4836.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	5.80119369898558	6.06825582675845	5.87219928566663	5.3155185316862	5.32760822641438	5.57367892903287	-0.966984856823503	0.00302062770599242	0.0423495807374621
Merged-chr4-11558872-4	chr4	11558395	11559395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001256145)	promoter-TSS (NM_001256145)	-25.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	5.44615523741061	5.7796113002372	5.52754429546419	5.87697165084167	5.88040326683346	5.30000666343329	0.2379249294462	0.509351226481512	0.84026772146894
Merged-chr5-105557969-4	chr5	105557448	105558448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	38477.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	8.10120391256978	8.07353359217736	7.54454493485836	7.7700794775749	8.3418539575902	7.56990465373469	0.0153149734400867	0.959621752072955	0.990242512723989
Merged-chr2-52952479-2	chr2	52951979	52952979	+	768.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	94611.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.54993429761161	4.9208475293572	4.66370868124296	4.89017687278566	4.66052239545036	4.56139390862629	-0.0270305032513144	0.949263775428095	0.988169196639905
Merged-chr17-74440704-4	chr17	74440209	74441209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033367, intron 5 of 8)	intron (NM_001033367, intron 5 of 8)	18399.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	5.59336940470714	5.57642198669607	5.68274040169517	5.3640798459061	5.644550695726	5.84227552270041	0.0198330222942762	0.952673411109098	0.989243363345054
Merged-chr12-102386314-2	chr12	102385814	102386814	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 8 of 9)	RSINE1|SINE|B4	53499.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.27578530374422	3.41357776840737	3.708369195306	3.13999807909895	3.06874544514006	3.68321855257381	-0.575371628361087	0.399218653757152	0.775712434823128
Merged-chr12-69367737-2	chr12	69367237	69368237	+	796.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4413.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	4.23496623174808	3.89444148780968	4.48001605064525	4.03704739835579	4.35448250198467	4.42726679474557	0.177180965561125	0.728451337877982	0.930478966998914
Merged-chr17-47792672-4	chr17	47792181	47793181	+	833.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001161723)	TTS (NM_001161723)	6937.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.08028704700766	6.22795433655393	5.64328306036947	6.11384581642539	6.39109982958636	5.84982829833982	0.220832162927638	0.519085588840322	0.845629761325035
Merged-chr2-59220206-2	chr2	59219706	59220706	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	59356.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	4.00184863279338	4.13735425663307	4.21161420834811	3.90236328843639	4.15361595092484	4.09750380127283	-0.164479114840492	0.736786269750468	0.933284983163126
Merged-chr11-4188187-3	chr11	4187702	4188702	+	855.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	1369.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	6.00525712132714	5.99250315603481	5.45725185325072	5.70212478370756	5.67787475463723	4.8633508560662	-0.67254182324083	0.116766944302947	0.456276129499372
Merged-chr3-126770250-4	chr3	126769725	126770725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025439, intron 5 of 19)	intron (NM_001025439, intron 5 of 19)	173161.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.43423723418815	4.55495187568935	4.5576662440226	4.91154893730244	4.9926293252559	5.00450793062489	1.05472492401114	0.00799254484835505	0.0860432703621096
Merged-chr7-48314608-2	chr7	48314108	48315108	+	913.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	-73918.0	NM_207539	404240.0	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	2.50956698427267	2.50118603760771	2.73795021887119	2.40298975376059	2.36705841699543	2.51025521697675	-0.987065497715785	0.22326871480279	1
Merged-chr2-103050819-2	chr2	103050319	103051319	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22694.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.24629987799714	3.97655416559406	3.73401774083031	3.98117650296611	3.78435760930079	3.63235945077383	-0.610754076753463	0.273177866917287	0.670444855009706
Merged-chr16-58524142-1	chr16	58523642	58524642	+	551.0	f1_c57bl6.idr	promoter-TSS (NM_018784)	promoter-TSS (NM_018784)	111.0	NM_001357435	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	4.08860726068931	4.18397690148714	4.02197150037196	3.73211885935661	3.8936789723593	3.73171614599912	-0.957264747659033	0.0637727684334056	0.329042216404573
Merged-chr4-125125737-6	chr4	125125228	125126228	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2153.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	7.17967725711083	7.04120367579959	7.30417935627593	7.49367329254127	7.61872221668779	7.25772453437295	0.443969479402139	0.0712277713120961	0.350092763620822
Merged-chr6-57581006-4	chr6	57580510	57581510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025992)	promoter-TSS (NM_025992)	18.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	7.75922555222123	8.04404317072814	7.58197171918921	7.67768298217591	8.24662088787556	7.66790080734076	0.126323243045828	0.65064838558957	0.90265185343381
Merged-chr15-76700482-2	chr15	76699982	76700982	+	741.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_182805)	TTS (NM_182805)	-1060.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	5.38524844059752	5.67399869041397	5.39683477552458	5.34263418612168	5.60746955533225	5.23177238578949	-0.155831205105926	0.660787921780823	0.906145159206461
Merged-chr17-81574961-2	chr17	81574461	81575461	+	605.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	163426.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.63429706933027	4.55810603525706	4.68371881539642	4.5029284922023	4.52348957399386	4.78560283717781	-0.0531036298345413	0.898855698759003	0.976432549466174
Merged-chr12-72664220-1	chr12	72663720	72664720	+	551.0	f0_balb.idr	intron (NM_025522, intron 1 of 6)	intron (NM_025522, intron 1 of 6)	608.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	3.87639308957296	4.23735446180955	4.44278985743775	4.17555267778339	4.4184340975879	3.95975693262329	0.0187587827527582	0.971550130478153	0.99377981119604
Merged-chr9-22229677-3	chr9	22229205	22230205	+	717.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028420, intron 1 of 4)	MERV1_LTR|LTR|ERV1	3993.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	4.18604612581836	4.17919845457171	4.26567608079069	4.56261934276967	4.56579048642024	4.84777950896261	1.15153926520405	0.00933595498964093	0.095939995402994
Merged-chr14-65102226-4	chr14	65101713	65102713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4107.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	6.40721479116266	6.50636687141813	6.17442176713082	6.51968760587137	6.7697314639406	6.77830327623904	0.503212736477153	0.0702043092786675	0.347092107335672
Merged-chr15-74999029-2	chr15	74998529	74999529	+	694.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271417)	promoter-TSS (NM_001271417)	-998.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	3.11039892981429	3.07188514166681	3.3596554493731	4.71319444032114	4.98394990943127	4.00861061452676	8.02125992470768	2.15733245572949e-10	2.66331333792789e-08
Merged-chr12-21347074-3	chr12	21346519	21347519	+	887.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277266, intron 6 of 19)	intron (NM_001277266, intron 6 of 19)	26613.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	5.22756361869684	5.09033522762861	4.64681757431055	4.7457240731992	4.60821744858365	4.16687799511988	-1.09323190772231	0.0221375581343958	0.172712808256558
Merged-chr3-107686956-2	chr3	107686456	107687456	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	9100.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	3.98216486416016	4.22732442427094	4.06524015898768	4.67001943683468	4.59270053984203	4.66774748278538	1.4176968845414	0.00191952855646808	0.0299606325504776
Merged-chr2-155710764-4	chr2	155710274	155711274	+	851.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145537, intron 8 of 10)	intron (NM_145537, intron 8 of 10)	-18390.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	3.58656286585458	3.67365878089095	3.69214567640273	3.66994120027415	3.71103902705311	3.81184097495845	0.269021167902549	0.616677872112788	0.888421011873208
Merged-chr6-140611167-2	chr6	140610667	140611667	+	624.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-11496.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	5.14793393144961	4.78160196496656	5.14487836159914	5.42598194924742	5.01519026970523	5.39311798830648	0.520969858965722	0.182696336315967	0.565521995170527
Merged-chr16-93028878-4	chr16	93028361	93029361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202787.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.29244885529983	7.12820656557516	6.81908841581699	6.59503947432346	6.76440013355485	6.31303212868141	-0.802180609509771	0.00527887270205521	0.0635205263619103
Merged-chr12-79017480-4	chr12	79016990	79017990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10213.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	6.98273990184213	6.88808344257578	7.17896943119156	6.2816975512605	6.3606055909494	6.61387758270939	-0.942849129422744	0.000465727739802095	0.00994412978533557
Merged-chr10-21849860-1	chr10	21849360	21850360	+	675.0	f1_balb.idr	Intergenic	Intergenic	-32324.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.63592791900695	3.62398141907537	3.47039446465302	3.11131666437273	3.12138173742667	3.43202343729026	-1.44703090769594	0.0219835575849733	0.171916082694557
Merged-chr17-56612098-4	chr17	56611592	56612592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1303.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	4.77078266750988	5.09448208448651	5.00716386400036	5.16666411477418	5.0706347322222	5.44276765983584	0.547709823367192	0.154297450404197	0.523602796670256
Merged-chr3-51720445-3	chr3	51719955	51720955	+	966.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	RMER19A|LTR|ERVK	59276.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.57418751327837	4.51347059047941	4.57655457127627	4.24087680271732	4.24856792158434	4.52263265138004	-0.56381750823346	0.199113594183312	0.587491363597214
Merged-chr6-135169433-1	chr6	135168933	135169933	+	946.3333130000001	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1218.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.10373009618615	3.25763256301849	3.43779408165486	2.87983946725027	2.8463455896061	3.07434570798549	-1.56254090711769	0.025017921738749	0.187057386438797
Merged-chr11-70654633-4	chr11	70654135	70655135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	15.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	6.96513458661546	6.89661281521528	7.33439629248883	7.04742913489908	7.24695585772646	7.44241015478219	0.271960853713155	0.311231988076622	0.706465219571547
Merged-chr11-82969924-2	chr11	82969424	82970424	+	610.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9243.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	4.36211845080803	4.44873091606766	4.61815231233423	4.54544304652349	4.25168686629273	4.48409577580466	-0.12033006177222	0.786566846499329	0.948530822116986
Merged-chr14-27340862-3	chr14	27340390	27341390	+	785.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	PB1D10|SINE|Alu	4853.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.24451392516504	4.26839161598898	4.12011895457802	4.54550043595012	4.35316705963598	4.6643827579459	0.78225265312401	0.0855355535964992	0.387288581798505
Merged-chr2-101781477-4	chr2	101780983	101781983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	16224.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.77019676773639	6.49258195625688	6.68355845938267	6.82087477070268	7.06264609062329	7.14256294395697	0.560604009670202	0.0335110940580577	0.223500409937709
Merged-chr11-73327497-2	chr11	73326997	73327997	+	826.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2244.0	NM_001045531	380709.0	Mm.340910	NM_001045531	ENSMUSG00000112920	Spata22	Gm882	spermatogenesis associated 22	protein-coding	6.05113940831851	6.48549808846412	6.08604967857732	5.99576859962503	5.84717969110396	5.96256380255875	-0.510799237712494	0.0988380274158889	0.419333642002316
Merged-chr7-135914438-4	chr7	135913943	135914943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-198064.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.95281305510983	5.17552429347187	5.51664282561292	4.96630556154893	5.15525761619202	5.14175372999264	-0.273309893998871	0.480441524658557	0.824543506620807
Merged-chr7-16108735-2	chr7	16108235	16109235	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025898, intron 2 of 10)	intron (NM_025898, intron 2 of 10)	10155.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	2.12884012898189	2.06167519761051	2.61840593167418	2.36630212625025	2.18816898373743	2.6923233018888	0.826370966920678	0.394623438169333	1
Merged-chr7-19699133-4	chr7	19698595	19699595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	93.0	NM_001305843	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	7.09532121882806	6.96191874156442	7.43491229202291	7.19802709616846	7.34332209642472	6.57879661503207	-0.123096687146325	0.69152130416208	0.918349474539044
Merged-chr18-39615993-2	chr18	39615493	39616493	+	888.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-128748.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.56673684951264	3.71618655824211	3.81590158645444	3.66341324860577	4.03908666038489	3.93261133646204	0.6319139739303	0.247199725081357	0.644145276280485
Merged-chr4-24620588-4	chr4	24620099	24621099	+	978.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355618, intron 9 of 9)	intron (NM_001355618, intron 9 of 9)	124148.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	3.90790506221592	3.43786891297696	3.94701207148966	3.84988594874768	3.82498072857058	4.43155343824635	0.836633264969529	0.159445128706681	0.531641365234441
Merged-chr15-9747616-2	chr15	9747116	9748116	+	706.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	1252.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	3.60020867380639	3.79526031375465	3.80626160531395	3.64643574743756	3.74253051862254	3.67066810482044	-0.150946680816208	0.780301961995845	0.945976443458414
Merged-chr14-54900560-4	chr14	54900038	54901038	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6395.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	4.14745889812204	4.2480252503807	4.17117917874895	4.5960024061951	4.36869185185659	4.66507078701428	0.912835452857915	0.0438143375197451	0.263229797388164
Merged-chr10-95506254-2	chr10	95505754	95506754	+	543.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4305.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	2.49638637852521	2.61392937866471	2.68111927748254	2.60281085423374	2.60994460773537	2.43254985274163	-0.242225876101579	0.758757488807328	1
Merged-chr10-21918860-4	chr10	21918369	21919369	+	762.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	36685.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.15101520201314	3.30208557019181	3.28476605403145	2.88074401033881	3.06056388668597	3.30112564789045	-0.688037106512617	0.307720098765263	0.703816371678414
Merged-chr2-38483522-4	chr2	38483017	38484017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28180.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	7.68042616150016	7.4140805221177	7.4477330824017	7.34562174287171	7.58018247361258	7.45262386878174	-0.0817472511646718	0.730445586590956	0.930884711548651
Merged-chr12-71008023-3	chr12	71007531	71008531	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	7792.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	4.84667805621771	4.63077918407638	4.66789666393753	4.93152879274739	4.75316164320559	4.85164351553874	0.280718544738848	0.481201102906971	0.824953741430059
Merged-chr3-138964066-3	chr3	138963567	138964567	+	842.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 5 of 13)	intron (NM_001356388, intron 5 of 13)	111134.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	3.64934491813196	3.70390586888704	3.75122219003712	3.74916636277962	3.80818170555615	3.55049417029478	0.0507108304279535	0.925919943810197	0.983305773102619
Merged-chr7-140882352-4	chr7	140881855	140882855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	-39.0	NM_011875	23997.0	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	6.31672414186926	6.31416894107542	6.54863004783271	6.45937840823209	6.2568070235595	6.31912262971182	-0.0714460928796008	0.796546704254327	0.951430675491237
Merged-chr5-102052369-4	chr5	102051858	102052858	+	896.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	17563.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.83899993909718	6.60641599532085	6.95548224189407	7.11669597456137	7.02638996165325	6.76441358107698	0.281410646257148	0.290618030375493	0.688467858771324
Merged-chr7-45593275-4	chr7	45592761	45593761	+	977.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18085.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	5.33724261254122	5.23840431514513	4.91242363530528	5.37230071083039	5.69897751207813	5.46456258382477	0.662705558839855	0.0716155341369759	0.351070414632015
Merged-chr13-22022470-3	chr13	22021971	22022971	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	tRNA-Ser-TCG|tRNA|tRNA	-12730.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	2.94885133212836	2.95579631353571	3.10192664585652	2.94255552334716	2.66718861943439	3.00198992787698	-0.6227545944497	0.385322333843237	0.766341662207074
Merged-chr10-12867742-3	chr10	12867173	12868173	+	942.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5938.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	6.37036269337446	6.0285681249288	5.88326519372217	6.25280148163099	6.57746812133599	6.09350090151209	0.36000442500468	0.264258463453058	0.662208359386194
Merged-chr4-3686451-2	chr4	3685951	3686951	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	8330.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	6.05794241263009	6.12679545445955	6.31885006294359	6.33244208013752	6.697613665619	6.68630577956949	0.687018615635213	0.0168619832557109	0.144113252167782
Merged-chr9-13526435-5	chr9	13525863	13526863	+	921.3666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93626.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.4938830265763	5.33092390103676	5.47977974611868	4.74933906405464	5.29398948628166	4.99768950526943	-0.783408552449209	0.0438333711833367	0.263304010209578
Merged-chr15-89075990-4	chr15	89075496	89076496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040417)	promoter-TSS (NR_040417)	-68.0	NM_026485	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	7.54840695012719	7.76420349654841	7.70432485521906	7.64208676836528	7.73094245267717	7.46209133074919	-0.0753857539644075	0.743290126238682	0.935574668962892
Merged-chr18-32067888-4	chr18	32067371	32068371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173441, exon 1 of 14)	5' UTR (NM_173441, exon 1 of 14)	137.0	NM_173441	73473.0	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	8.57351491175741	9.06116045978832	8.52881233603956	8.60250382463745	8.82887762842614	8.49600673073953	-0.132615170632486	0.593720732220473	0.878591467713705
Merged-chr5-101937380-2	chr5	101936880	101937880	+	975.625	f1_balb.idr|f1_c57bl6.idr	exon (NM_172882, exon 14 of 67)	exon (NM_172882, exon 14 of 67)	132541.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.0437191691065	3.02714407345412	3.52163707193442	3.06303770469907	3.12215646577957	3.11379535935751	-0.464721281798484	0.495436830009679	0.832500902975543
Merged-chr5-105354230-3	chr5	105353706	105354706	+	835.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7730.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	3.39395752248451	3.6150655298352	3.28820237318769	3.66740902319249	3.62733534127916	3.64750816617801	0.711029862384831	0.227696885081365	0.622842513404052
Merged-chr9-56592870-4	chr9	56592362	56593362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42786.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	2.95676533031699	2.90557386704583	3.180737776095	2.91929212315432	2.76554744206219	2.71498352755222	-1.03689712184795	0.153536823075013	0.522515009178965
Merged-chr7-19714705-2	chr7	19714205	19715205	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109748, intron 1 of 8)	intron (NM_001109748, intron 1 of 8)	724.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	5.50671141491759	5.71459704747418	5.88166648778822	5.49487906317887	5.46929828314738	5.4780859099396	-0.414389210859502	0.208845443040095	0.599958314648662
Merged-chr2-35231212-3	chr2	35230723	35231723	+	782.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25136.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	3.16230820620544	3.26406701847134	3.63442768446147	3.34822945786072	3.38142992566214	3.33957961896799	-0.0118514366629697	0.984971593367533	0.996843917206
Merged-chr1-131525303-4	chr1	131524825	131525825	+	902.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081011, exon 2 of 23)	5' UTR (NM_001081011, exon 2 of 23)	2036.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.13355368478996	4.93818993800496	5.26570175431651	5.1363719230275	4.55387710774265	5.17579647480249	-0.294308467026073	0.485708980491135	0.827565480713329
Merged-chr15-62038992-5	chr15	62038439	62039439	+	825.617798	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132746)	promoter-TSS (NR_132746)	-318.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.57690274856893	7.88895489339379	7.47882141897799	7.88699894988291	8.03819975473147	7.16145446046664	0.136906816784284	0.652324916919448	0.902943650908013
Merged-chr16-62826580-6	chr16	62826074	62827074	+	891.1527710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026577, intron 3 of 9)	intron (NM_026577, intron 3 of 9)	11898.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	2.74772608465233	2.73152402284721	2.68435085919916	2.76805447723974	2.56662713175006	2.81979589848455	-0.0290011819860087	0.968892713424889	1
Merged-chr1-128615634-3	chr1	128615159	128616159	+	980.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23360.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.50525797274226	5.8416179050952	5.81018152895258	4.72441895486999	4.59094253457795	5.09206989116536	-1.90366375126395	8.09975234067873e-07	4.50812169072372e-05
Merged-chr16-58408349-4	chr16	58407816	58408816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028523)	promoter-TSS (NM_028523)	-219.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	4.05475714569891	4.252701386773	4.41858064951854	4.1158026439609	3.82150761105987	3.89372731525795	-0.856390907949241	0.0905352884426017	0.400236971667835
Merged-chr2-145825410-4	chr2	145824908	145825908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	39292.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	7.88438803251331	7.71811231598874	7.89238375159143	7.66452943384834	7.99353155323892	7.66945339489761	-0.056503343029617	0.809363028330468	0.954721853010197
Merged-chr19-24965549-2	chr19	24965056	24966056	+	604.0	f0_c57.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	-3940.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	6.28214166563044	6.27853798747241	5.92443248180119	6.6117918074725	7.04690184864619	6.33771988615154	0.85742367877854	0.00807574647238224	0.0866271383877764
Merged-chr9-44346647-2	chr9	44346147	44347147	+	576.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2419.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	2.40835564113569	2.4710409421131	2.70901813149452	2.31759646691528	2.42184410147477	2.47808377439446	-0.761956453885021	0.354687998922818	1
Merged-chr7-64140567-2	chr7	64140076	64141076	+	643.0	f0_balb.idr|f0_c57.idr	Intergenic	MER2|DNA|TcMar-Tigger	-13259.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	4.28166030527567	4.71331413476065	4.52460306313259	4.3054900322951	4.74387480005114	4.74775550321387	0.229757244056648	0.618796451107676	0.889515655407396
Merged-chr1-88589660-2	chr1	88589160	88590160	+	565.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38143.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	5.5598648289755	5.31844657064822	5.76796608473315	5.66721755237691	5.31183640108643	5.62769283297303	-0.0270240004584243	0.939031741657369	0.986603666382121
Merged-chr19-56681419-4	chr19	56680819	56681819	+	917.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41053.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.6020533635979	3.60024129599759	3.48508844495893	3.36625792509344	3.43252529417301	3.44464047253351	-0.56487634697634	0.327284222576528	0.719432161047941
Merged-chr4-141794311-1	chr4	141793811	141794811	+	1000.0	f1_balb.idr	intron (NM_001355176, intron 1 of 8)	MIR3|SINE|MIR	699.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	7.0280390282387	7.17762845258215	6.96614551458643	7.22172963160726	7.45157143874567	7.19513875526377	0.354098597796598	0.148414896433993	0.513953991981574
Merged-chr2-116971825-3	chr2	116971332	116972332	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71680.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.35379330045726	6.92149081093374	6.84789252541189	7.16501471946648	7.26294465038095	7.25257140667946	0.237544432152647	0.372778389272353	0.756577008990047
Merged-chr8-117337313-2	chr8	117336813	117337813	+	812.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-11857.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.30762632056242	4.37439091812837	4.93754404371504	4.61562326543652	4.12662080392615	4.76815162374837	-0.0922191601528897	0.855814125130357	0.966258544020232
Merged-chr1-155144905-2	chr1	155144405	155145405	+	909.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008209, intron 1 of 5)	LTR33|LTR|ERVL	1909.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	6.33370520939615	6.53681845171699	6.23448172266882	6.17523222549905	6.2372342224137	6.07547790471222	-0.351834136936652	0.215487282533436	0.608899282194137
Merged-chr12-52525058-4	chr12	52524555	52525555	+	974.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	8978.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	5.46103454280511	5.55291450316734	5.30593896567815	5.92033247805171	5.96801825007058	5.62089597222989	0.741253174913442	0.0246926132717114	0.18556052962913
Merged-chr17-30550169-3	chr17	30549668	30550668	+	891.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172618, intron 1 of 11)	B3A|SINE|B2	26119.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	4.62284644754111	4.67206268159184	4.41175797298276	4.94781550098401	5.11239736285331	4.62007104860908	0.777693223544921	0.0687013954074877	0.342942254787785
Merged-chr13-33964596-4	chr13	33964058	33965058	+	974.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163241)	promoter-TSS (NM_001163241)	-101.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	5.49937334701759	5.70483147873003	5.6834678091262	5.78287629157547	5.875925002534	5.79718845533102	0.349606893955247	0.261488894905145	0.659232278973625
Merged-chr2-166674848-3	chr2	166674346	166675346	+	784.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	GC_rich|Low_complexity|Low_complexity	38986.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	3.89459171827021	3.90545607876562	3.80533239265415	4.17933341863512	3.62360564423731	3.65559319607589	-0.0706352296888631	0.900327166776916	0.976731943826834
Merged-chr3-21934945-4	chr3	21934447	21935447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-141705.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.50416170149201	6.62546857684459	6.25041646084653	6.66760670361217	6.98440525892679	6.20051545229544	0.316507643437678	0.329609238352384	0.721408142613596
Merged-chr1-154062778-1	chr1	154062278	154063278	+	822.333313	f0_balb.idr	Intergenic	Intergenic	-138409.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.95731687696229	3.89347575834658	3.73338440652183	3.26467432565555	3.51316038195458	3.69975286426305	-1.27330118878469	0.0308823183863565	0.21267589753933
Merged-chr7-98336735-2	chr7	98336235	98337235	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15527.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	5.51005348510146	5.1223383580228	4.92762309020269	5.15332033207026	5.10959226139431	5.0694180472545	-0.224575629582036	0.562121605496879	0.86560636450104
Merged-chr17-31060394-2	chr17	31059894	31060894	+	555.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	2700.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.66523507833179	7.70843414449427	7.47979561010093	7.50837348970624	7.74860257633185	6.84261715302762	-0.27577355950667	0.360789898456776	0.746938274913623
Merged-chr17-4995533-9	chr17	4995012	4996012	+	942.2037349999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001085355, exon 1 of 20)	exon (NM_001085355, exon 1 of 20)	438.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	6.57846797993833	6.27368064375917	6.69890873633128	6.83341663698362	6.17162836926042	6.72718959977066	0.126606631476327	0.692701615544446	0.91870248759071
Merged-chr4-66794438-1	chr4	66793938	66794938	+	638.0	f0_balb.idr	Intergenic	Intergenic	-33113.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	3.63411273645692	3.40373344244662	3.49875824775756	3.47318479034987	3.18453140709051	3.02499758009287	-1.06009946615572	0.110851386819583	0.444841551070303
Merged-chr1-153443229-1	chr1	153442729	153443729	+	575.0	f0_balb.idr	intron (NM_001033162, intron 6 of 9)	RLTR40|LTR|ERVK	18020.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	2.95570887713081	2.96607446715043	3.19557584533197	3.02504242285365	2.79619387923806	2.98194347965791	-0.489614050057065	0.479429204017417	0.824256068595422
Merged-chr7-96977888-2	chr7	96977402	96978402	+	648.666626	f0_balb.idr|f0_c57.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	26375.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	5.52697653696786	5.58743799344698	5.14408629716441	5.14975290731299	5.04774876925106	5.17445821381043	-0.654133560400199	0.0710393900484966	0.349641876680191
Merged-chr10-30787882-4	chr10	30787363	30788363	+	790.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	15463.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	4.17576244826409	4.15057261461965	4.07072017238445	3.97083739226913	3.99553598567392	4.09165758067019	-0.348402407676299	0.467425753800148	0.817990683108999
Merged-chr18-39491590-4	chr18	39491084	39492084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-4339.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.81185184541328	7.73309117980013	8.04240554658281	8.00203311593252	8.2373765029148	7.8043120494041	0.241832052225483	0.315319282749877	0.709692649130764
Merged-chr16-31838281-7	chr16	31837808	31838808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 13 of 22)	intron (NM_001357281, intron 13 of 22)	-40502.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	8.21139454331663	7.99889430281575	7.52688254170237	8.00621807046859	8.22790742517056	7.30261821236514	-0.052100050574035	0.871336739481766	0.970222087171093
Merged-chr3-135670710-3	chr3	135670219	135671219	+	901.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	20828.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.44873337994163	3.3332834556336	3.21675655746062	3.60733491778018	3.33844701913981	3.77768925938248	0.884418911569444	0.154300000106092	0.523602796670256
Merged-chr14-62218250-4	chr14	62217752	62218752	+	924.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	74727.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	3.65436358864727	3.49242614272282	3.5442292412621	3.1361918099464	3.34560415510549	3.39736291048205	-1.03229448665161	0.0911243071369552	0.401708887647408
Merged-chr11-62542814-4	chr11	62542316	62543316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB4|LINE|L1	-3555.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	6.71299771897794	6.40388766974132	6.53736108823878	7.04442738248686	7.01884704938327	6.59696746982847	0.552833515151331	0.0487138893938358	0.280200837044262
Merged-chr18-39490283-2	chr18	39489783	39490783	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-3038.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.67813506524684	7.50057202931695	7.76945246636728	7.8611960620586	7.36708067066879	7.80137092317821	0.0567382084993413	0.824016889126009	0.958461473318254
Merged-chr5-99487134-4	chr5	99486655	99487655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	LTR33A|LTR|ERVL	-234228.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.75213162348225	4.54047105860711	4.60555562187721	4.43580118955604	4.51903120253654	4.46179535031674	-0.397254192884499	0.346682044417909	0.734817218634266
Merged-chr8-61540044-4	chr8	61539529	61540529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081390, intron 10 of 19)	intron (NM_001081390, intron 10 of 19)	51140.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	2.64123401733215	2.51252940176693	2.5443712785427	2.22702131305615	2.26959248846248	2.29597610214728	-2.19669458710601	0.0149543238222071	1
Merged-chr19-5724208-2	chr19	5723708	5724708	+	916.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	2109.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	4.9840080989578	4.86578740743274	5.23725120775623	5.23528489559637	5.07247154318719	5.47196488226402	0.481800528076747	0.206216436006973	0.596809057329073
Merged-chr13-49108627-4	chr13	49108115	49109115	+	893.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	39713.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	2.28147435739826	2.50330319466343	2.50291676917443	2.72112214957036	2.39565432638301	2.64132046054799	0.94096838151417	0.258659385976974	1
Merged-chr5-18011312-2	chr5	18010812	18011812	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	48742.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.9613144300138	3.79160800625481	3.62013579088887	4.19285144707213	4.12286519709995	4.20832029519868	1.09270664364815	0.0357523267864578	0.232435134274611
Merged-chr12-102375165-2	chr12	102374665	102375665	+	992.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	64648.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	4.25000380973219	4.19108766286296	4.53138615581498	4.3576500143968	4.32694006900559	4.59676993727494	0.267356169411597	0.558877300014025	0.864883618129129
Merged-chr9-121332207-4	chr9	121331709	121332709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	34707.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.5489145445153	4.74528977400824	4.84424850063172	5.31888656324232	4.61004281259713	4.98846389394622	-0.210727861543706	0.659487620262347	0.905465938176062
Merged-chr12-85335946-2	chr12	85335446	85336446	+	699.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 2 of 21)	B1F|SINE|Alu	3416.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	2.64677653746713	2.80415011620024	2.99966336895888	2.75287426818358	2.77293653130139	2.89906040408308	-0.06151826142993	0.932903649929015	0.985339513877805
Merged-chr6-31177033-4	chr6	31176542	31177542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41432.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	7.93561432092477	7.93281090974867	7.65363808870571	7.63304610369266	8.10814634056372	7.6239258653637	-0.0477616247348727	0.852828858997452	0.965544656676077
Merged-chr2-128803638-4	chr2	128803136	128804136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008587)	TTS (NM_008587)	-14667.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	6.59418553120314	6.11619393594441	6.20066381478818	6.11611058239326	6.21427042523344	5.8866608819361	-0.397347513182666	0.205978453517229	0.596556044561839
Merged-chr7-142397410-2	chr7	142396919	142397919	+	665.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9549.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	7.67737972942832	7.79816419753183	7.68485904236878	8.0491485093706	8.22053171080697	7.69504218507207	0.418256609268129	0.084568066468193	0.385068385393751
Merged-chr4-129854146-2	chr4	129853646	129854646	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33438.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	5.29775940211579	5.29115257295131	5.21669110633067	5.35468853550673	5.33831652767501	5.5498259392538	0.271862495783247	0.425471116325088	0.793122312144138
Merged-chr5-43883960-3	chr5	43883433	43884433	+	782.122253	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	MTD|LTR|ERVL-MaLR	15124.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	6.91981176268409	6.92244652624672	7.34202973021103	7.09689270430238	7.17867700019988	7.07562130415798	0.0810111238878222	0.75485498967002	0.939123558849015
Merged-chr14-33215061-4	chr14	33214571	33215571	+	796.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1752.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	3.82908579429479	3.75067246471391	3.98378437897743	3.37838370797907	3.21628187539975	3.67111995731126	-1.55317977206471	0.010160356815675	0.101491352931414
Merged-chr6-119388806-4	chr6	119388327	119389327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355692)	promoter-TSS (NM_001355692)	-93.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	7.71552299455303	7.67216994867103	7.28479827677221	7.6270562370659	7.68402844106118	7.36568140666682	-0.0110014549908885	0.965244662489476	0.991840962282624
Merged-chr4-35131727-4	chr4	35131205	35132205	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-20350.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.21928912323643	4.45792896488795	4.60707998787583	4.29444102508865	4.24757041761364	4.11082890717383	-0.546238100356406	0.242014265435781	0.639104507431288
Merged-chr15-100085114-4	chr15	100084617	100085617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 2 of 3)	B1_Mur2|SINE|Alu	46453.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	8.07661396365168	8.11762209482116	7.37687572098437	7.9542173735059	8.27531702949346	7.57921943251804	0.0958431249668113	0.755430651283719	0.939315847504439
Merged-chr4-151977944-4	chr4	151977440	151978440	+	838.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172704, intron 11 of 15)	intron (NM_172704, intron 11 of 15)	11046.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	2.93845451932352	2.82542354347257	3.23598029793588	3.09308474347792	2.61163834173062	3.08743334216707	-0.269030745596833	0.726607569588199	0.929918214751674
Merged-chr6-83634227-4	chr6	83633721	83634721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21895.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	6.72599125883811	7.07011689959047	6.85309296586933	6.88925656310222	7.09710490583667	6.58416992028336	-0.0115337150271862	0.967331260384277	0.992555129128888
Merged-chr19-59943543-4	chr19	59943039	59944039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033172)	promoter-TSS (NM_001033172)	115.0	NM_001164367	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	7.89703902711555	7.85909740701087	7.71012993789071	7.86235105617016	7.46333421151196	7.48595600435161	-0.301338801609078	0.212523553452782	0.605079620294493
Merged-chr7-135653263-2	chr7	135652763	135653763	+	694.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-949.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	6.01948544125833	6.22821810478322	6.04991518454522	6.11589274130605	6.24791901004765	5.86774584047974	-0.0115204908103588	0.969495564202005	0.993164504846051
Merged-chr2-128741159-4	chr2	128740686	128741686	+	981.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	42271.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	6.04517776731712	5.91729463830444	5.66894607203011	6.16044076970487	5.81213207507323	5.91659935376222	0.128084820885571	0.687792783465457	0.917193226920892
Merged-chr7-101381747-4	chr7	101381270	101382270	+	825.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	3648.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	7.99030853076361	7.98500530724223	7.84052034227347	7.9797652090871	8.10825005388692	8.17444222884667	0.205481915411976	0.336779959468641	0.726845122878733
Merged-chr5-120529684-2	chr5	120529184	120530184	+	752.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 13 of 13)	intron (NM_001177595, intron 13 of 13)	18492.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	2.6632424256139	2.51508216225482	3.12130825142946	2.70707757953348	2.44064170146579	2.74241784986752	-0.802299690357992	0.331671493787105	0.722983381930143
Merged-chr6-84020214-4	chr6	84019714	84020714	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	828.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	6.20157644554389	6.20652500917797	6.20613846003272	6.28915596557488	6.4068505694067	5.89291405766977	0.0424942201919322	0.887620731528015	0.973836995667151
Merged-chr3-158035683-2	chr3	158035183	158036183	+	784.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	956.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	6.30997997738784	6.91666817293617	6.20049690846091	6.63735981304431	6.83865953902663	6.30563100579847	0.147622766750931	0.661622472256621	0.906493864324557
Merged-chr3-154596695-4	chr3	154596209	154597209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357674)	promoter-TSS (NM_001357674)	-2.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	6.24383951953608	6.54569258777038	6.49884766871884	6.34811028649328	6.21388902647123	5.8773239106437	-0.435357565109792	0.150148801158378	0.516968653402835
Merged-chr3-31409029-3	chr3	31408529	31409529	+	907.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98710.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	4.0142650072266	4.21598973531456	4.01502285432926	4.29991852055384	3.97019024889239	3.87618291468792	-0.069711163182287	0.8910401355615	0.974714927935992
Merged-chr19-8967029-4	chr19	8966520	8967520	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-21.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	7.60649309105569	7.79455839961021	7.13336739457211	7.4818368904774	7.6523721718045	7.24301975294853	-0.107672230820523	0.700385939540557	0.920919335036368
Merged-chr7-90139767-3	chr7	90139280	90140280	+	712.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	L1MB7|LINE|L1	9567.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	5.6855171827457	5.91243494210148	5.73289273368318	5.36550789043095	5.51171000187559	5.79444678225814	-0.4136803196366	0.212801183919162	0.605400742325823
Merged-chr5-105531539-1	chr5	105531039	105532039	+	1000.0	f0_balb.idr	intron (NM_133897, intron 1 of 3)	L1MEf|LINE|L1	12068.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	4.69854906446124	4.28192852151889	4.67906215486003	3.68339173577964	3.48255108350455	3.76782098688976	-2.9243511742356	2.57180224562067e-07	1.63854916733235e-05
Merged-chr5-76322459-1	chr5	76321959	76322959	+	601.0	f0_balb.idr	intron (NM_001310637, intron 2 of 4)	intron (NM_001310637, intron 2 of 4)	8697.0	NM_001310637	79455.0	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	3.09003585298299	3.21003565686229	3.553462532379	3.31452561915942	3.22487482887948	3.80974778947643	0.662500907529484	0.323679346515492	0.716910464718615
Merged-chr13-58443968-4	chr13	58443479	58444479	+	864.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40636.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.49706473940809	3.15402673513904	3.26333699186026	3.20718494796742	3.26103236675936	3.27761578529381	-0.269447466303067	0.669496223247203	0.909692012644768
Merged-chr10-8796095-2	chr10	8795595	8796595	+	736.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	89975.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.04053935472224	3.48164224367344	3.23865054851562	3.0872512952553	2.91154009188144	3.71708505785031	0.0837799227233921	0.910464894586088	0.979856358918468
Merged-chr3-145650755-4	chr3	145650262	145651262	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	-777.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	3.60219811591162	3.48435745258538	3.9660227720247	3.62052651551628	3.57840810585966	3.80285129834853	-0.084044673213056	0.883730469844278	0.973446302281334
Merged-chr16-55818275-5	chr16	55817760	55818760	+	708.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159394, exon 5 of 12)	exon (NM_001159394, exon 5 of 12)	3878.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.59071036030691	3.27142279145977	3.14729384607525	3.2725731178601	3.20376199385233	3.71129593530565	0.212969748714195	0.750885811719106	0.937674068369247
Merged-chr2-90569370-2	chr2	90568891	90569891	+	703.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	11256.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.8120123263745	4.5031874680665	4.82597021356622	5.17182429635827	4.92170043478057	5.22885911042381	0.860515898911047	0.0320759555904285	0.217447575507504
Merged-chr1-144140037-4	chr1	144139521	144140521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153171, intron 5 of 5)	intron (NM_153171, intron 5 of 5)	37351.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	3.86703539925901	3.74598243828507	4.25835439362372	3.8604527188863	3.77462190894226	3.97695370037157	-0.296639671179155	0.580962946858066	0.873185386905448
Merged-chr2-119034850-4	chr2	119034336	119035336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173450)	promoter-TSS (NM_173450)	46.0	NM_173450	271842.0	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	6.60900955314183	6.97843688174863	6.47674477904254	6.53067067755948	6.53032253323727	6.55447966180118	-0.284083109379684	0.313187100515723	0.707835513355939
Merged-chr2-144301061-6	chr2	144300570	144301570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	30166.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	6.09290760681062	5.75620303231507	6.04027838626196	5.82696671905081	5.80719148607882	6.29929006237075	0.0307299580043377	0.925765461864816	0.983283624589872
Merged-chr15-80563839-4	chr15	80563338	80564338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-3368.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	5.08754108237823	4.78040996040006	4.91895274774768	5.17973987964353	5.02651397545466	5.02087765963731	0.304474947635396	0.422833693101987	0.791567180556068
Merged-chr12-4906609-2	chr12	4906109	4907109	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145441, intron 1 of 6)	intron (NM_145441, intron 1 of 6)	911.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	5.85228601054932	6.20388592212779	5.50172278082612	6.11302155900542	6.13028624759785	5.93338706722561	0.286367961389948	0.400877158100669	0.777044437562385
Merged-chr5-29735847-4	chr5	29735314	29736314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011847)	promoter-TSS (NM_011847)	-84.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	9.16082860595262	9.52667248430791	8.78704985012801	9.14636255708642	9.29415825415016	9.04705410121751	-0.0432363189658477	0.864739229568841	0.968375729297123
Merged-chr6-147091496-4	chr6	147091007	147092007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001081237, exon 1 of 3)	5' UTR (NM_001081237, exon 1 of 3)	432.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	5.27212368847194	5.52541319116518	5.49789738618005	5.07165205868396	4.94786509157758	5.23561270014013	-0.720797979702841	0.0446710414094554	0.266412558314074
Merged-chr9-22117696-3	chr9	22117220	22118220	+	935.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	-525.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	6.56442658880494	6.79591868068788	6.52317005509034	6.76614828135827	7.03216063893063	6.68683415508509	0.323525263630216	0.233935790967055	0.630165756456608
Merged-chr17-65609598-2	chr17	65609098	65610098	+	566.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	3957.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.46983633843658	4.23523610633045	4.84263192254372	4.56565124555709	4.61811545610593	4.44618272708825	0.0538474224078376	0.906793588198306	0.978838075044546
Merged-chr7-79935761-4	chr7	79935239	79936239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	-475.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	7.01159814802005	7.12007528050955	6.3017168654749	6.20052224383087	6.1929901672252	6.0129759895444	-1.16970738477804	0.000317904706416178	0.0073032067397784
Merged-chr2-164680070-4	chr2	164679552	164680552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5055.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	6.33490114944622	6.34129909656191	6.45104598281897	6.60968302149467	6.67736568628232	6.3587141466536	0.312438429053278	0.2505303507572	0.647918487779112
Merged-chr13-45897810-4	chr13	45897309	45898309	+	978.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	67182.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.91208867600532	6.12037468196824	6.17169871076862	5.92120737297292	5.95232542074103	6.38218596810437	0.0376409715640892	0.90447515002027	0.978131323042371
Merged-chr11-49210722-1	chr11	49210222	49211222	+	632.5	f0_balb.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	7222.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	4.87121745849862	4.83749273879597	4.96330865366175	5.00562063023064	4.91926681321642	5.1287543305365	0.275171765726145	0.464556469077973	0.816459397744841
Merged-chr11-114750300-4	chr11	114749839	114750839	+	818.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001034878, exon 9 of 13)	exon (NM_001034878, exon 9 of 13)	-15050.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	2.59657336369723	2.24668272900691	2.42081350387477	2.5807220796528	2.41146944297167	2.68646405709551	0.775369180128525	0.360995136837431	1
Merged-chr2-27317033-2	chr2	27316533	27317533	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-69730.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	3.0581549282349	2.88311656630291	3.2921285494266	2.8826890554921	2.91544253808774	3.20304400502001	-0.359620406644102	0.608745093967954	0.885006495769744
Merged-chr1-87632436-3	chr1	87631983	87632983	+	943.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	B1F|SINE|Alu	12171.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	5.49042955540117	5.54665762375777	5.6869245966894	5.48331776257225	5.53497136771668	5.41287163814963	-0.166449920904593	0.609578167383237	0.885289561762565
Merged-chr2-127443597-2	chr2	127443096	127444096	+	605.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029629, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	969.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	2.50903771649513	2.43972904860755	2.68198345521745	2.87266717324818	2.52935510418108	2.81711577904516	1.13236927179541	0.153390248366933	0.522293889843917
Merged-chr11-101980653-2	chr11	101980153	101981153	+	738.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	4138.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	5.69250444461297	5.71675335272202	6.05956475143118	6.40170932919923	6.39610683170381	6.09843449532524	0.846994648228438	0.00566101207085256	0.0668528883319275
Merged-chr16-91548788-3	chr16	91548258	91549258	+	876.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	B3|SINE|B2	1664.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	7.17767105355299	7.19364497429238	7.01669359306059	7.81364456710413	8.09993853972338	7.54070903977548	1.03965888419129	5.49703217208071e-05	0.00170670542154661
Merged-chr10-87863412-3	chr10	87862913	87863913	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	2302.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.61922894825507	5.80165277739474	5.87771102214801	5.75955966120278	6.02172689837488	5.81669166651678	0.204497373840937	0.514562384015061	0.843107848235413
Merged-chr6-113644293-4	chr6	113643798	113644798	+	805.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 1 of 11)	MIRb|SINE|MIR	5831.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	7.45183335534354	7.73546938116774	7.599860012002	7.41876413960071	7.64836658380346	7.54147615110836	-0.0871090884507299	0.710129130781003	0.924238639711345
Merged-chr13-5804786-4	chr13	5804257	5805257	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53335.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.05974252927335	8.37961275661753	7.71339833652906	7.86510565425034	8.21953891714853	7.92510048797864	-0.0999269737885787	0.708285881406157	0.923674318414978
Merged-chr9-114754838-2	chr9	114754338	114755338	+	568.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23635.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	2.87573325625836	2.64970938891084	3.13799313168207	2.92639191140028	2.89184912885659	3.36579098418773	0.798723001329277	0.291622105277616	0.689180216265016
Merged-chr6-5092931-4	chr6	5092423	5093423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101023.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.44413960067212	6.51444818148156	6.69565033728384	6.64636402546482	6.95556382238837	6.91501142188372	0.470890390916855	0.0775931722728602	0.367597492390671
Merged-chr7-132575841-4	chr7	132575334	132576334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	564.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	8.58463942917669	8.48170752876304	8.32008481760302	8.38047861890193	8.35688871571452	8.35144658724775	-0.149965806267041	0.468220081836402	0.81842859839597
Merged-chr4-32571660-4	chr4	32571153	32572153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	9.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	8.1483550582491	8.26632164429157	7.92100416841749	8.11942449275824	8.23558171857937	7.7065696982929	-0.107144906916074	0.668909972829783	0.909385924601941
Merged-chr6-97806914-4	chr6	97806397	97807397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113198)	promoter-TSS (NM_001113198)	-161.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.86479749969876	6.82531202441353	6.82340370331658	7.05761185856511	7.13355028086224	6.74040745994336	0.246421782947827	0.337540527170957	0.727414835127997
Merged-chr19-56253524-3	chr19	56253048	56254048	+	927.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34364.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	4.53466030823788	4.9003376622068	5.11464226156971	5.01444449614568	5.06726709613972	4.94122802823925	0.328497770401841	0.421461981865828	0.790322303942262
Merged-chr12-35036340-4	chr12	35035830	35036830	+	905.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10859.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.63942707045202	5.57620895477219	5.58443736463082	5.07892391196243	4.8583198200687	5.20220328262501	-1.12568902018442	0.0013502635433579	0.0228034765406381
Merged-chr1-191098793-1	chr1	191098293	191099293	+	681.0	f0_c57.idr	intron (NM_030060, intron 1 of 2)	intron (NM_030060, intron 1 of 2)	379.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	6.17064296229645	5.65057740067774	5.90153571980468	6.04033782834094	5.54422002865067	5.59231585377784	-0.320356102809391	0.365708458019831	0.750755886042233
Merged-chr9-63603496-3	chr9	63602975	63603975	+	787.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	829.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	7.23438101809286	7.30932718729867	7.09220287561072	7.58940663030919	7.80961419670261	6.96469760157666	0.436355231198746	0.138288890639448	0.496965622023286
Merged-chr1-184844987-6	chr1	184844457	184845457	+	758.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133684, intron 1 of 7)	intron (NM_133684, intron 1 of 7)	890.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	5.24071325572477	5.36643831697925	5.29986181424279	5.42845036826015	5.60956936240936	5.29917839022355	0.311114147400867	0.364923252979087	0.750149069466966
Merged-chr8-95132139-4	chr8	95131650	95132650	+	871.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	10390.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	4.25080605345229	4.41630538814575	4.42131537627211	3.69368083381253	3.77194445762904	4.00178126271682	-1.6146996405398	0.00143373762127891	0.0238883540231029
Merged-chr13-58542987-4	chr13	58542478	58543478	+	844.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	67899.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.77054398110107	4.39384833456758	4.45858500529974	4.70123094851688	4.89385164586159	4.28763639475572	0.258575111187112	0.581321052775496	0.873278833301446
Merged-chr1-106796719-4	chr1	106796214	106797214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	11.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	8.51903257920282	8.92912437024344	8.42701914107835	8.37221005738637	8.70068619266477	8.40071098013716	-0.20103000943492	0.413399277974557	0.785010436140338
Merged-chr4-155163450-3	chr4	155162954	155163954	+	862.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59081.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.42409810012449	5.10320153274511	5.17134129278514	5.18260550617801	4.70003959990376	4.91627362716468	-0.628795976547117	0.112287305287555	0.44763602190707
Merged-chr4-116667399-2	chr4	116666899	116667899	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15725.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	6.43339302257095	6.59277910563685	6.20777636583131	5.97830989318816	6.22555243993544	6.06879420365598	-0.547270417302147	0.0624158345021279	0.324674716007318
Merged-chr7-48998871-4	chr7	48998338	48999338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39765.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.49008184850552	6.25680859879296	5.92561567082892	6.26682687106382	6.36654148350971	6.10925243719373	0.00260064729122045	0.993279675985377	0.998651348330892
Merged-chr11-83834433-4	chr11	83833951	83834951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16418.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	5.90056891827394	5.8286016676184	5.53556165139461	5.73279772563254	5.48608360971115	5.4141670401458	-0.408195317466087	0.222770417367778	0.61771534824776
Merged-chr15-50869673-4	chr15	50869174	50870174	+	976.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	CpG	19375.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.61133502934546	6.86611203075825	6.8609891141023	6.35921992387445	6.43087832197492	6.47513742673115	-0.575943250314045	0.0297295570095421	0.207650212343657
Merged-chr14-10430093-4	chr14	10429601	10430601	+	966.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	23357.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	5.25660273046286	5.36295760112517	5.44811870466624	4.91511617564785	5.15221505356725	5.7609723962714	-0.0778179891969385	0.84839404692709	0.964356989789491
Merged-chr9-108460151-4	chr9	108459649	108460649	+	995.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	-369.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	6.01508809009456	5.83216301800932	5.9451626419932	6.07474520431907	6.02781923498707	5.85952610328003	0.112863531649168	0.704283566986584	0.9223772679418
Merged-chr13-52620263-2	chr13	52619763	52620763	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	23381.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.38234511176084	5.30524585840044	5.48956906317602	5.04099681246972	5.42989829662057	5.11461975614727	-0.337342769120057	0.354523066929835	0.74168645124508
Merged-chr19-8841682-2	chr19	8841182	8842182	+	761.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008144, intron 2 of 10)	PB1D7|SINE|Alu	1179.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	2.35287028516136	2.49396032893	2.61996965009083	2.49339136283036	2.32299545392281	2.69314435478162	0.0980109390477703	0.905368469754527	1
Merged-chr1-120071560-2	chr1	120071060	120072060	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	2220.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	3.29417922011276	3.38125826815508	3.45021650556727	3.49087107482984	3.5230262646243	3.52091421036327	0.523263678403098	0.367008065816167	0.752075043478182
Merged-chr3-108258092-3	chr3	108257594	108258594	+	903.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1168.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	6.67130023908686	7.02650876584242	6.56276888886933	7.06564685449008	7.74281112866107	7.05036190425875	0.851069404616795	0.00707274925416918	0.0787724963111912
Merged-chr5-96866561-3	chr5	96866078	96867078	+	855.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-54694.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	5.16779280778872	4.84466449350256	5.07298338972435	5.03535310013897	5.00928370645662	4.67773360051742	-0.228742683018117	0.565318049028179	0.866599059240356
Merged-chr7-110061550-4	chr7	110061025	110062025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-177.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	8.32525618938831	8.66066908186012	8.06318257767884	8.23617613839655	8.48827811686419	8.29390624204844	-0.0476854498635099	0.847977481454957	0.964318271116593
Merged-chr5-34336300-4	chr5	34335799	34336799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011278)	promoter-TSS (NM_011278)	49.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	8.61886583191261	8.89216964831249	8.65324261334132	8.5468198323214	8.83098600920315	8.62427327952277	-0.0735165568833996	0.735265040016997	0.93263515373305
Merged-chr4-132334959-4	chr4	132334460	132335460	+	946.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133878, intron 6 of 9)	intron (NM_133878, intron 6 of 9)	-5422.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	4.72041860551201	4.44396887976402	4.61853931556222	6.42745556205163	6.33999919117161	5.74031770631914	3.22321151246325	9.05478928822823e-16	2.88670845630228e-13
Merged-chr7-118114734-3	chr7	118114228	118115228	+	635.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1419.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	5.12817196643893	4.79098894685349	5.00430202126656	5.32370759686862	5.23602323547353	4.66495778982902	0.286738985426382	0.494201558922863	0.831830146957693
Merged-chr10-84330046-3	chr10	84329538	84330538	+	914.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110433.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.66603934996454	3.52620295111448	3.60622761700342	3.33109717865393	3.18166442961936	3.34924175728523	-1.23207198029918	0.0401619027340629	0.249499149073907
Merged-chr16-62854333-4	chr16	62853842	62854842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011173)	promoter-TSS (NM_011173)	35.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	6.31238696467934	6.03535855533537	6.1333755281694	6.06372045441532	5.84441468852602	6.38746355780885	-0.105865248770444	0.737361712164777	0.933692850573981
Merged-chr1-131076897-4	chr1	131076406	131077406	+	729.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008551, intron 1 of 9)	ORR1D2|LTR|ERVL-MaLR	20937.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	4.20267086630311	3.94877239344461	4.29563687834596	4.31440421411858	3.79277260458409	3.94202434897571	-0.335691510808469	0.524323311063612	0.848650426908011
Merged-chr9-78110325-4	chr9	78109834	78110834	+	962.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163780, intron 1 of 13)	intron (NM_001163780, intron 1 of 13)	1142.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	6.35476677237854	6.87741920569604	6.63407888330626	6.38599174151	6.32447479448289	6.66098648107777	-0.297428734749467	0.31683344572762	0.710777474639496
Merged-chr14-67760701-1	chr14	67760201	67761201	+	563.5	f0_c57.idr	intron (NM_177780, intron 48 of 51)	intron (NM_177780, intron 48 of 51)	15520.0	NR_133010	14714.0	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	3.21089099838979	3.33316620066225	3.66292170927459	3.76797467751648	3.7835767425518	3.73305109246048	1.28521928180688	0.0307774875098513	0.212192627974509
Merged-chr15-81948732-4	chr15	81948243	81949243	+	780.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145473, intron 3 of 3)	intron (NM_145473, intron 3 of 3)	11984.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	2.02177656661026	2.04141428230727	2.16878193619542	2.3445125998028	2.08148926330539	2.56340364581522	1.91049338747538	0.0449269423423079	1
Merged-chr19-46564235-2	chr19	46563735	46564735	+	752.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	8947.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	3.06864763005666	2.84002884904715	3.14313107124317	3.37396028579334	3.66185384394552	3.60509086702567	2.31466624903995	0.000774168180771106	0.0148064036655531
Merged-chr13-113602081-4	chr13	113601587	113602587	+	764.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	ORR1B2|LTR|ERVL-MaLR	16477.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.98544989943835	6.76127412456717	6.76453643477821	6.9967889347657	7.00171401406341	6.96998046139089	0.223285564711358	0.367654554346997	0.752612310816183
Merged-chr4-119538849-2	chr4	119538349	119539349	+	889.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-80.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	6.72615824079796	6.7396044617807	6.33183034918622	6.23866725621601	6.57570405736866	6.35172203506692	-0.351720205662473	0.227517197719585	0.622644333537758
Merged-chr10-24928192-4	chr10	24927729	24928729	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007482)	promoter-TSS (NM_007482)	-759.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	5.2331181240472	5.47405529290763	5.23466677415376	6.12565790082749	6.01038545746183	5.78379803627797	1.21587939827573	0.000248890114123141	0.00599064177493732
Merged-chr4-45532499-4	chr4	45532009	45533009	+	870.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1681.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.68868492133883	3.46939735764276	3.80107384243715	3.28736617219562	3.46569794001628	3.72567042227634	-0.553259742856896	0.356266463456681	0.743149157465617
Merged-chr6-39417287-2	chr6	39416787	39417787	+	935.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	2489.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	4.71513495634775	4.76107284278345	4.45751263272729	4.17632044392735	4.45294606246495	4.52510673993567	-0.662090685903255	0.13740487015923	0.495350480317544
Merged-chr10-125735946-4	chr10	125735442	125736442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-230277.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	3.3461231683794	3.50029433291367	3.5265764603578	3.39525220804263	3.42094395243616	3.64669390771597	0.106797503651027	0.855386486869632	0.966184375148922
Merged-chr8-83572631-3	chr8	83572111	83573111	+	827.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025843)	TTS (NM_025843)	5853.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	4.26958815942643	4.19982890707249	4.0158824221601	3.99905195357952	3.8304487617825	4.08526272663093	-0.599553794548613	0.225621176306323	0.620672689459997
Merged-chr10-51524981-2	chr10	51524481	51525481	+	767.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34083.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	5.14979245103301	5.15336906820038	4.9873222590552	5.29524140067324	5.47266905612182	5.05358402220865	0.393484039679481	0.286047853691793	0.68342985932029
Merged-chr19-60790735-4	chr19	60790256	60791256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010123)	promoter-TSS (NM_010123)	-63.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	9.21541843467866	9.51167546271524	8.92580068358743	9.10914484807002	9.1841087574665	8.797865661992	-0.272169186204333	0.267168528836779	0.664550966981069
Merged-chr5-147471431-4	chr5	147470920	147471920	+	982.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	41264.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.3954608761457	5.28172125624866	5.22932623756065	5.09025180337132	5.24218030904363	5.22802396601849	-0.239971442037848	0.492336036889392	0.83104217378051
Merged-chr1-180261982-4	chr1	180261462	180262462	+	901.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5662.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	5.60357644829691	5.42535961874665	5.22015784980815	5.90981579120808	5.54533716772785	5.97537009145387	0.702129153868882	0.0457232776462964	0.270089622355711
Merged-chr1-46873980-4	chr1	46873480	46874480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20362.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	5.5430468069184	5.08548016173537	4.92506199556829	5.47382470125798	5.15201110259189	5.10646997309863	0.0674486701918516	0.866784924118537	0.969114221403526
Merged-chr14-103008738-2	chr14	103008238	103009238	+	997.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	RMER13B|LTR|ERVK	25065.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	4.35689906037364	4.03715199358668	3.97396549020997	3.98435866134038	4.22487509772824	4.32240037576696	0.117081765464483	0.815331732541631	0.956370078970016
Merged-chr2-90484585-1	chr2	90484085	90485085	+	1000.0	f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-5411.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.34323422628744	4.53252287272327	4.51021825666458	4.95725088674577	4.61020318815889	5.05612689207136	0.97972422759668	0.0230369068078521	0.177411230015354
Merged-chr13-5862354-8	chr13	5861845	5862845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	856.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	8.8519423553874	9.47903085226725	8.53209216267107	8.89196699576973	9.41933806665641	8.88004903071364	0.0939738251130028	0.7591722613257	0.940311236380535
Merged-chr6-134994347-3	chr6	134993883	134994883	+	969.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12382.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	3.71549232272106	3.78689000566175	3.66086655391109	3.43409594267537	3.49632334032972	3.39664972802455	-0.995163183098066	0.080977436261267	0.376570195966439
Merged-chr10-41477892-4	chr10	41477386	41478386	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-124.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	6.99883696553029	6.92051073830059	6.76873957325592	6.78892988927635	6.91948889062789	6.66429984081789	-0.157492756572273	0.538005661590666	0.854944075396138
Merged-chr2-30196885-4	chr2	30196429	30197429	+	720.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356475, intron 1 of 13)	intron (NM_001356475, intron 1 of 13)	8918.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	4.26818167634559	4.26231633980657	4.19611910914858	4.31328471255946	4.06602281663874	4.43848199624432	0.0705711057084703	0.880343643616245	0.972509150541233
Merged-chr10-34244895-4	chr10	34244409	34245409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37281.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	6.02897282286437	6.05534204125562	5.93096018925017	6.36708615506202	6.39849593507724	6.04125004823888	0.471482330456479	0.107763663081273	0.438517159510296
Merged-chr11-103370321-1	chr11	103369821	103370821	+	637.0	f1_balb.idr	intron (NM_183034, intron 9 of 11)	intron (NM_183034, intron 9 of 11)	-6629.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	3.45285044537029	3.24765016121217	3.83554203238044	3.37131757057745	3.58337761895708	3.51044129884902	-0.122282387577763	0.844703202626828	0.96373428957366
Merged-chr9-13312948-2	chr9	13312424	13313424	+	748.0	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	65968.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	3.33128189519802	3.23931452755037	3.24129056634077	2.88327765650291	2.68421106347758	3.25772567465833	-1.4381571612129	0.0573111355574489	0.308876544301069
Merged-chr1-171020869-2	chr1	171020369	171021369	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144559, intron 3 of 4)	RLTR12D|LTR|ERVK	1943.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	4.08980020468434	3.90376516125663	4.02203932872739	3.95961836586126	4.07312042479654	3.99358928095049	0.0187102927729101	0.969684535285665	0.993198925979166
Merged-chr2-131086842-4	chr2	131086337	131087337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-72.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	7.23855265970083	7.35717339634599	7.4591962208173	7.20339488684619	7.37625383837845	7.2576388598192	-0.0980707961631957	0.676053063069869	0.912421384593547
Merged-chr15-103515241-4	chr15	103514748	103515748	+	967.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001285890, exon 1 of 15)	5' UTR (NM_001285890, exon 1 of 15)	271.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	3.85789181934122	3.95488275436006	3.82536482912428	4.15880102075048	4.12949701108198	4.19006035559118	0.808310469366276	0.0994000938296032	0.420396615196382
Merged-chr5-65198542-3	chr5	65198040	65199040	+	849.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-1156.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	4.18849639065558	4.28653888242895	3.87800062991577	4.01672325701969	3.86701652014057	4.32748398556021	-0.176762462265721	0.734673617151451	0.932581576444515
Merged-chr7-114461819-6	chr7	114461318	114462318	+	980.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	46564.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	5.58314254149939	5.31408413678232	5.50017978945384	5.48627059909021	5.36286683943475	5.25521514089924	-0.181802009393914	0.595418237905065	0.879492777122762
Merged-chr6-84043638-4	chr6	84043128	84044128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	24242.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	8.53851813990379	8.45534354280082	7.9858216441254	8.4531466907536	8.74242479681238	7.91766215751473	0.0970041313852562	0.740153344810071	0.934499978758628
Merged-chr4-141641282-1	chr4	141640782	141641782	+	577.0	f1_balb.idr	intron (NM_001347237, intron 5 of 18)	intron (NM_001347237, intron 5 of 18)	-17448.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	3.98733963126955	4.03849115800533	4.83225396421977	4.85487362576685	4.72647354343668	4.89686541906011	1.18451731970475	0.0220418052716844	0.172276397994205
Merged-chr11-35834562-4	chr11	35834076	35835076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025936)	promoter-TSS (NM_025936)	-48.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	7.46008948356925	7.72841254341348	7.50627700877843	7.63455903351021	7.47856920297495	7.26529560347302	-0.145723959570307	0.549943693392007	0.860509903840749
Merged-chr4-88458844-3	chr4	88458340	88459340	+	792.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-19914.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.62627560661504	3.76365111651464	4.02667686078117	4.05113366431907	3.85407779733346	4.34807078320753	0.85855103805202	0.113700990307856	0.450458333979919
Merged-chr2-27401729-3	chr2	27401223	27402223	+	680.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009500, intron 1 of 27)	ORR1A2-int|LTR|ERVL-MaLR	25885.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.66290721539499	4.27751013001342	4.30276892087681	4.39802559677843	4.31075690470422	4.12823505973167	-0.373024128837643	0.429001625854922	0.795570481157701
Merged-chr7-25130458-2	chr7	25129958	25130958	+	801.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2002.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	5.94176552132285	6.06313816967266	6.11821840967442	6.3964316089811	6.66106306722467	6.57658324019929	0.850428700545047	0.00233936724760904	0.0348103551676584
Merged-chr4-8648551-4	chr4	8647979	8648979	+	758.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41927.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.76116664397794	4.59659493851372	4.50268450550626	4.76677486092697	4.44923745460464	4.8468561068537	0.138104347489658	0.748057934667167	0.936880860325556
Merged-chr15-76925655-4	chr15	76925103	76926103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172817)	promoter-TSS (NM_172817)	-155.0	NM_001168276	239546.0	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	5.25582056718591	5.18575409549861	4.86226593447295	4.54147651257736	4.71717387433668	4.50395949152599	-1.16744102426624	0.00459978478212353	0.0577980809651065
Merged-chr5-135134317-3	chr5	135133824	135134824	+	710.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152882, intron 14 of 16)	ZP3AR|Satellite|Satellite	-15387.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	4.0679312270981	4.09693145841002	4.31442658448412	4.12881171151694	4.27688580305848	3.79341056860313	-0.18250269721605	0.723201255953569	0.929000340406704
Merged-chr18-66438519-2	chr18	66438019	66439019	+	677.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-20085.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.71633568315286	4.56852084668979	4.31970077342442	4.59042856969336	4.98019117005353	4.81795541743125	0.59888163513964	0.171007351409555	0.548963962743078
Merged-chr7-97749851-2	chr7	97749368	97750368	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11621.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	5.59262109688388	5.55794574457171	5.77717101095155	6.3317609577574	6.73232520919738	6.59234246378425	1.58740880365476	1.24916759634089e-07	8.71255132911426e-06
Merged-chr15-31601780-4	chr15	31601273	31602273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	73.0	NM_007637	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	7.57392789545212	7.6306896262062	7.44594563889927	7.79611857669656	7.57641418149417	7.41655782493377	0.0780318570894408	0.742180826060916	0.935149189479947
Merged-chr17-70968983-7	chr17	70968473	70969473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21543.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.89800092362986	7.91437604304464	7.29950424970139	7.9275361313705	8.13722958570635	7.48531837177891	0.205004375255433	0.485571530846278	0.827504186777075
Merged-chr15-101259333-4	chr15	101258821	101259821	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-7525.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	6.04594436952793	5.90993435925168	6.26240537113085	6.08229425396203	6.19521371165899	6.14065379344301	0.122756107739281	0.67592106411781	0.912421384593547
Merged-chr2-45117305-4	chr2	45116818	45117818	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355288, exon 1 of 11)	5' UTR (NM_001355288, exon 1 of 11)	124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	8.19428959182471	8.30235078376543	7.96617950827023	8.3016851674814	8.18068378946307	8.31564205179516	0.136873343315095	0.531910567365663	0.851867550687707
Merged-chr5-140751420-5	chr5	140750964	140751964	+	823.07666	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 7 of 7)	B1_Mus2|SINE|Alu	27337.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.54943659431038	2.38473501437594	2.501534461226	2.23000590836605	2.18909493765251	2.31777276775374	-1.65606648871217	0.0586585965537575	1
Merged-chr15-78327095-2	chr15	78326595	78327595	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	1105.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	5.58416063102674	5.55444346843028	5.90751709146747	6.07170768646819	5.91283593942714	5.94539473173645	0.535347140788082	0.088243217009836	0.394284730900624
Merged-chr5-92149417-3	chr5	92148900	92149900	+	705.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	11462.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	3.41180831970723	3.07977632721882	3.1888227140374	3.38858605356995	3.15409271999325	3.31958258332776	0.208229519738128	0.746119914383635	0.936284397599588
Merged-chr3-108997939-4	chr3	108997431	108998431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	29676.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.15955067158241	5.08316319630945	5.19466536020605	5.25305014219717	5.4162736592601	5.70621724620103	0.636643444159019	0.0753969618339376	0.36159125428477
Merged-chr10-87721055-2	chr10	87720581	87721581	+	893.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137184.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.40161182094128	3.81481563663766	3.96889159520478	3.88795996613789	3.89347512161685	3.84504898580199	0.419682327391506	0.460504871178205	0.814520074002194
Merged-chr14-25466465-3	chr14	25465927	25466927	+	841.1555789999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	7242.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.05260950057677	4.16761027946984	3.9339505545953	3.64714164099489	3.75809930417298	3.74371768487201	-1.07892265250504	0.0389960343708508	0.244889209655076
Merged-chr5-122109983-4	chr5	122109469	122110469	+	906.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183307, intron 11 of 12)	intron (NM_183307, intron 11 of 12)	9018.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	3.80277122303859	4.07742129205325	4.18892797156942	3.6380128271117	3.55401699946916	3.63219093314201	-1.38309687833353	0.0117785784348514	0.112742661268506
Merged-chr1-13297399-3	chr1	13296906	13297906	+	849.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	RSINE1|SINE|B4	75023.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.43110829928466	4.32362574161268	4.9116228449282	4.39289495161527	4.49448903427253	4.66215801015161	-0.125689389331573	0.78580734074804	0.94816498272858
Merged-chr1-131198493-4	chr1	131197988	131198988	+	912.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	1697.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	7.31204454335806	7.28473465415148	7.17007012668472	7.06527112584375	7.39749292158232	7.15289270408563	-0.059746866901409	0.807581285016622	0.954557080558103
Merged-chr16-33782134-4	chr16	33781637	33782637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11900.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.25043762319006	3.23192009187619	3.32442669431736	3.74696925901632	3.62369341935997	3.39795213692916	1.28324948483303	0.0332790368943196	0.222580335719478
Merged-chr8-46941504-4	chr8	46941009	46942009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45378.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.85112287287553	7.95566483968839	7.49946289909091	7.73384718495996	7.9459718981865	7.59722119705779	-0.0250920631925779	0.920084691156229	0.982235825946236
Merged-chr5-151322128-4	chr5	151321623	151322623	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46552.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	3.60976588055199	3.87363124132087	3.96342421473057	3.92659313514086	3.89473577419046	3.8866620839114	0.264924313978833	0.61418470935071	0.887421941740887
Merged-chr4-155216863-4	chr4	155216353	155217353	+	791.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	5682.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	4.69420743985622	4.72882311488673	4.56968322443194	4.92302063722844	4.71812171036692	4.504517457287	0.144398937111998	0.729851084925045	0.930635866770147
Merged-chr5-8357438-4	chr5	8356934	8357934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	10726.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	6.69158334956586	6.69661071679906	6.22252450417148	6.15747380164512	6.32287729607486	6.49781660718532	-0.386818136348337	0.193795701993912	0.581051915952343
Merged-chr18-3507330-2	chr18	3506828	3507828	+	991.5	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-629.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	3.43896974650068	3.48491955863202	3.4533444874095	3.71821331773068	3.49585527987656	3.52509300499348	0.447338877792086	0.434229900895026	0.798254680283528
Merged-chr3-127498982-6	chr3	127498524	127499524	+	939.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001327938)	promoter-TSS (NM_001327938)	91.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.15884270149373	4.1820912225868	4.39065122174187	6.10591467291336	6.24515652331046	5.55513903658124	3.98199179127479	8.56855763694793e-19	4.72167247586201e-16
Merged-chr15-34456352-4	chr15	34455862	34456862	+	893.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173421, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3050.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	4.19228222941407	4.4078045661365	4.49552052430902	4.3047834467805	4.47241327626235	4.78513905236216	0.40821910521995	0.374633055717849	0.758118627242714
Merged-chr7-144581758-4	chr7	144581371	144582371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010175, intron 1 of 1)	intron (NM_010175, intron 1 of 1)	565.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	7.0948264973346	7.56348752065386	7.37420108484331	7.46082841739329	7.41799289525303	7.26195051895467	0.0386980988760832	0.878960903539617	0.972069683693405
Merged-chr8-9977203-2	chr8	9976703	9977703	+	891.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	-514.0	NM_001081119	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	4.66768133030522	4.65744586344488	5.34146846424893	5.10667476475159	5.1338545547515	5.19893068733835	0.491701032665435	0.245961213335622	0.643057268875461
Merged-chr7-100700015-4	chr7	100699519	100700519	+	772.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6616.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	3.90884025103638	4.08196243102512	4.27570474471483	3.95748621028759	3.9457885134962	4.17211481510446	-0.198188612638361	0.692313194670691	0.918648603655029
Merged-chr4-147936702-4	chr4	147936201	147937201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011122)	promoter-TSS (NM_011122)	75.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	7.00399586906808	6.72348189910443	6.9420870044216	7.0154516312325	7.04561983005993	6.79455422060733	0.108261431720186	0.673523093314491	0.911512280606219
Merged-chr4-45342063-4	chr4	45341506	45342506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153167)	promoter-TSS (NM_153167)	-95.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	7.23706660118951	7.34283401021302	7.02560419474105	7.37206893191371	6.97238958928431	7.38318298394424	0.0518885897222399	0.843606090496436	0.963565396615292
Merged-chr11-98795143-4	chr11	98794623	98795623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361932)	promoter-TSS (NM_001361932)	-393.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.57844301103618	7.44551364573036	7.57295505100417	7.87738105799605	7.53316611606049	7.74712948510877	0.278349713679606	0.233119072159459	0.629519668711194
Merged-chr1-144265828-4	chr1	144265325	144266325	+	750.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16721.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.96194090014229	3.90274017595577	3.77820385607942	3.712855576521	3.44781291763363	4.04049148092398	-0.448146692079881	0.432695191086075	0.797470602909747
Merged-chr11-80043589-4	chr11	80043066	80044066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1M8|LINE|L1	37425.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	7.12465244292695	6.8314550315144	6.54641849219557	6.82942433872437	7.03912480301864	6.90026206563784	0.0955932683900731	0.732510969580789	0.931782229960786
Merged-chr11-16986783-5	chr11	16986355	16987355	+	938.042847	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 6 of 9)	intron (NM_019549, intron 6 of 9)	21863.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	5.61641385783258	5.49810103102688	5.79065698141122	5.4549807319433	5.66552467898083	5.50795884742667	-0.1483972211003	0.652567261890025	0.902986290245403
Merged-chr17-15577530-4	chr17	15577024	15578024	+	942.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14201.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	3.77717523765451	3.5365350808984	3.27305457816949	3.18228431936642	3.06922799034479	3.34683848058872	-1.41539060911345	0.03043799876184	0.210851545003886
Merged-chr7-49250252-4	chr7	49249806	49250806	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	4117.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	2.33119838986618	2.15596969155503	2.57589250532692	2.18117318275881	2.08798231127142	2.14088243282835	-1.60933413373321	0.0833890788391061	1
Merged-chr4-130914846-4	chr4	130914323	130915323	+	934.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	MIR3|SINE|MIR	1489.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	8.01231112374686	8.13096372124072	7.7803263654967	8.13554899023223	8.22969134039371	7.9449500073882	0.176669625428603	0.442556325000859	0.803268256673243
Merged-chr4-155490562-4	chr4	155490066	155491066	+	985.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-795.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	7.79214759425083	8.01303398948022	7.79654427524298	7.89428760084576	8.15131115645322	7.9262677609945	0.179138459053132	0.429088694036575	0.795570481157701
Merged-chr18-20741047-4	chr18	20740552	20741552	+	969.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	5352.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	7.5387698796917	7.61393106925914	7.47537495451432	6.96696942358443	7.30111592727062	6.76004483387286	-0.744565609775618	0.00483195416207655	0.0597970590254548
Merged-chr16-93192921-4	chr16	93192412	93193412	+	920.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	160277.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	3.35607527616024	3.68106491176081	3.41877128508665	3.49748188208747	3.20846255247529	3.25607122291193	-0.651790306923016	0.29665560710515	0.693257309330038
Merged-chr1-86396143-2	chr1	86395643	86396643	+	703.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6782.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	3.50115052863456	3.46573887500587	3.45964858136806	3.65889171407661	3.39219042500696	3.6887336684969	0.375789712045392	0.516132409639124	0.844051513295388
Merged-chr14-72595491-3	chr14	72594992	72595992	+	870.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	114511.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.24502798948061	5.20837335209254	5.38441117593812	5.60689664658682	5.60545767022241	5.44777106879139	0.557168267976288	0.0948558826933075	0.410589829222532
Merged-chr11-73109291-3	chr11	73108790	73109790	+	726.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	18695.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	3.47627874258762	3.08328335415764	3.49827664836341	3.02684284873208	2.83517578401707	3.46710640205611	-0.939809052956147	0.200024065511194	0.588819237293881
Merged-chr12-101957309-2	chr12	101956809	101957809	+	617.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029705, intron 1 of 10)	intron (NM_029705, intron 1 of 10)	934.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	6.33496424875733	6.25906652403092	6.66481176263343	6.34406660703681	6.62724678027589	6.54592668942254	0.150972253589262	0.599049742121092	0.880902871165758
Merged-chr19-10970665-2	chr19	10970165	10971165	+	586.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_023529, intron 1 of 8)	intron (NM_023529, intron 1 of 8)	4005.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	3.05997576824335	2.69168479368938	2.9168764526509	2.88653563589042	2.71282154164649	3.26959733011418	0.345814731625548	0.649663415611571	0.902262496828066
Merged-chr10-79793590-4	chr10	79793098	79794098	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161747)	promoter-TSS (NM_001161747)	26.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	3.7488698524051	3.62954735448467	4.09419653085303	3.88999734952711	3.77779350423423	3.98196525483819	0.165760621721158	0.759354641021317	0.940397410143401
Merged-chr2-14494358-4	chr2	14493825	14494825	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001012305, intron 12 of 12)	intron (NM_001012305, intron 12 of 12)	105927.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	3.21695173515103	3.43821878279038	3.65650910942154	3.44766448416389	3.24241152380559	3.30216784493926	-0.424787072747975	0.496302161795345	0.832976113266569
Merged-chr15-90645091-4	chr15	90644569	90645569	+	940.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033851, intron 3 of 3)	intron (NM_001033851, intron 3 of 3)	34319.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.01133959289729	4.4926843762646	4.12079492600288	3.88498351647398	3.58771644747238	3.60617052120854	-1.63590620319761	0.00333747788823739	0.0455477874568569
Merged-chr14-14350979-2	chr14	14350500	14351500	+	686.650024	f1_balb.idr|f1_c57bl6.idr	intron (NM_008369, intron 8 of 11)	intron (NM_008369, intron 8 of 11)	4505.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	3.12474880800783	2.97210800378292	3.40683269928187	3.08811072298447	3.47818368251904	3.8132521954785	1.21268186958857	0.083610902837857	0.382678548038086
Merged-chr12-26469915-2	chr12	26469450	26470450	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020557, exon 1 of 5)	exon (NM_020557, exon 1 of 5)	735.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	5.8077549076632	6.08988184435039	6.25164761922572	6.09540864538836	6.22911572500184	5.76070000504288	0.000384339604401776	0.99905466513436	0.999864283693757
Merged-chr7-19719274-2	chr7	19718774	19719774	+	563.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008990, exon 8 of 9)	exon (NM_008990, exon 8 of 9)	-3845.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	2.03392060473844	1.96403408246651	2.12862968299975	1.8587006798462	1.68888200154441	1.93769001220729	-2.00529552230538	0.0672179964476309	1
Merged-chr18-60381408-4	chr18	60380903	60381903	+	999.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	MTC|LTR|ERVL-MaLR	5374.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	5.11852211402432	5.07662199063512	5.64837809642719	5.27979515594402	5.11777453419621	5.63680759014093	0.114738361183016	0.774701851072968	0.944493464665915
Merged-chr11-34047130-4	chr11	34046637	34047637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010696, exon 1 of 21)	5' UTR (NM_010696, exon 1 of 21)	209.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	7.72864894886959	7.38826377440262	7.53038660397336	8.02502755643104	7.7943759486367	7.75502814709534	0.443090185389628	0.0629271546027443	0.326375533265919
Merged-chr11-58030111-3	chr11	58029602	58030602	+	638.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028451, intron 1 of 18)	PB1D9|SINE|Alu	21038.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	3.52910488974243	3.53659373626077	3.59308067184598	3.52580948966883	3.09201048798044	3.66298788949538	-0.399004202104509	0.52946870324641	0.850904712036958
Merged-chr9-15709546-4	chr9	15709035	15710035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357565)	promoter-TSS (NM_001357565)	-203.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	8.75609034401582	8.81098497136134	8.56642074615268	8.41949853430348	8.58070698847112	8.24034872333944	-0.403686220872852	0.0648792869402809	0.332083970194424
Merged-chr6-90713321-4	chr6	90712832	90713832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	3197.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	6.18800161426892	6.41239717391173	6.45010768144095	6.41687658800278	6.36161858482896	6.41899126770167	0.0763904007741089	0.780225241184455	0.945966807104547
Merged-chr6-71437219-5	chr6	71436719	71437719	+	745.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	3418.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	4.25303790991841	4.52264913125966	4.46578698039885	4.43999495187743	4.32614410322733	4.76188261608938	0.233478606734942	0.608122478637381	0.884889830936802
Merged-chr3-144587289-1	chr3	144586789	144587789	+	690.0	f0_balb.idr	intron (NM_053102, intron 2 of 4)	L1MB3|LINE|L1	16862.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.43660960039739	5.60791748730625	5.43967416901323	5.32107375390552	5.03393318059872	5.28841651069399	-0.571762583847278	0.101273237993157	0.424440130792152
Merged-chr7-97164454-4	chr7	97163959	97164959	+	982.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	82708.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.27725406808191	5.60861019053728	5.15899404217772	5.0684680699499	5.38606736848256	5.29059906126726	-0.225750900042697	0.543830951153844	0.857551302506722
Merged-chr9-99140327-4	chr9	99139824	99140824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029094)	promoter-TSS (NM_029094)	-113.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.0727403680398	6.84893074696077	6.79678691260985	7.09325561669974	6.53599316155826	6.6791574808878	-0.190860274461852	0.506424179829983	0.83842879061576
Merged-chr12-111945228-2	chr12	111944728	111945728	+	578.75	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-746.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	4.31690692768273	4.16690243185599	4.44201893429189	4.72007556277659	4.55643204200219	4.74613786107365	0.92166473506057	0.0342605749533323	0.226554940635537
Merged-chr6-70805490-4	chr6	70804995	70805995	+	768.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13320.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	2.82154387954501	3.34649636399367	3.19739042279668	3.18579670535369	3.40192090876792	3.21152655835923	0.528892240850651	0.457061970268452	0.811993709825292
Merged-chr14-29967228-2	chr14	29966728	29967728	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1152.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	4.95239995659647	5.17035881851692	5.22935378955684	5.7556227483099	5.88037433345853	5.5985717136698	1.24055633309261	0.000288158908188836	0.00674082834764596
Merged-chr6-97459076-3	chr6	97458613	97459613	+	716.133362	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	173.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.173261116165	6.89240108718955	6.89646899335878	7.18981482918277	7.29435350078784	7.40753975956397	0.449334442261436	0.070967392806286	0.349456291841498
Merged-chr3-79177778-1	chr3	79177278	79178278	+	617.0	f0_c57.idr	Intergenic	L1M3|LINE|L1	-31903.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.32400714245265	7.67791594468227	7.5217699276696	7.57754500117957	7.89530209594662	7.70959949194274	0.320120606079751	0.1887422772663	0.574222837446979
Merged-chr17-56215398-2	chr17	56214898	56215898	+	908.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360284, intron 2 of 20)	intron (NM_001360284, intron 2 of 20)	3087.0	NM_001360284	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	1.95704166922054	1.99221734000695	2.2429717361683	1.73632958611827	1.7904859065854	1.85811399033888	-2.5816413679244	0.0215185712734522	1
Merged-chr2-137854693-3	chr2	137854169	137855169	+	921.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-401915.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	2.51496078139535	2.56983378655809	2.40809330484803	2.63057042316826	2.51868043034016	2.67728523177417	0.606825371312989	0.441568469586461	1
Merged-chr14-52196409-2	chr14	52195947	52196947	+	734.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_033618, intron 1 of 25)	intron (NM_033618, intron 1 of 25)	792.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	5.60148472394281	5.34342579193113	5.61289243312264	6.16796153660284	5.75022376572584	5.67580942869457	0.669018910384787	0.0501509249969813	0.285159854855906
Merged-chr4-43420983-2	chr4	43420483	43421483	+	615.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8151.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	3.6806193158433	3.62917582921083	3.59724217878654	3.32811504700413	3.29826042437832	3.45120255764673	-1.06398696772034	0.0676732678386844	0.340320674019776
Merged-chr8-122559235-4	chr8	122558741	122559741	+	989.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7912.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	5.17922062969532	5.30764671784627	5.79810133955562	5.26915958964827	5.22703638713248	5.48660468049784	-0.229797012752042	0.543490703767203	0.857551302506722
Merged-chr8-120718746-2	chr8	120718246	120719246	+	885.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-17612.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.22230470061085	4.30954176370014	4.21518532612028	4.13197291351384	4.23440125158878	4.19054185697042	-0.175294726207502	0.702857095532879	0.922010618774232
Merged-chr11-70475350-4	chr11	70474854	70475854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-15370.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	6.01071063050646	5.90151764609996	5.74397668185991	6.14075915098834	5.78894772192012	5.83276757103732	0.0586340570885026	0.852193139393439	0.96531854415899
Merged-chr18-24205880-4	chr18	24205377	24206377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	-82.0	NM_001361200	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	5.85824955465226	5.23396825005754	5.67813502314005	5.89431806645621	5.11428160251281	5.86243724776315	0.0932961732425229	0.821421495309361	0.958007382080696
Merged-chr19-17358294-1	chr19	17357794	17358794	+	676.0	f1_balb.idr	intron (NM_010265, intron 1 of 2)	ID4|SINE|ID	-1627.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.78492399764777	5.03971842339416	4.48715838349329	4.23329536132945	4.19791085917427	4.22486672398371	-1.46873946019703	0.00130637613866228	0.0222065261993485
Merged-chr1-121508944-4	chr1	121508441	121509441	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010483)	TTS (NM_010483)	19524.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	6.03741009858886	5.94265420653089	6.30044740529493	6.70860886050923	6.87077333329976	6.38041058342956	0.962579150161527	0.00119141392531995	0.0206520772070223
Merged-chr1-9876994-4	chr1	9876499	9877499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133220, intron 6 of 17)	intron (NM_133220, intron 6 of 17)	28718.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	5.85164855540213	5.67753001307992	5.79613914193175	5.92319574390121	6.13730320207981	6.02458447449632	0.460799344111426	0.125913171693511	0.474643086904141
Merged-chr5-66052242-2	chr5	66051742	66052742	+	818.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	ORR1F|LTR|ERVL-MaLR	45937.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.74770780021272	4.49809401351973	5.00951839376723	4.72745515457665	5.12378958700166	5.04028319364228	0.491277851979055	0.244597380759364	0.64198815440115
Merged-chr17-43568514-4	chr17	43568040	43569040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	89.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.77185331347634	8.00879905849692	7.95630750472584	7.11767853144183	6.97833050057655	7.58221004895708	-0.98218819031108	0.000214569217766376	0.00529631429009333
Merged-chr1-131688679-4	chr1	131688170	131689170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311096)	promoter-TSS (NM_001311096)	-25.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	7.086605150658	6.85069622159488	6.82200359411291	7.12863072008939	7.16160913708094	6.84989343859023	0.201871897529676	0.43415494198211	0.79820505573484
Merged-chr15-79109334-7	chr15	79108812	79109812	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177461, exon 1 of 16)	exon (NM_177461, exon 1 of 16)	329.0	NM_177461	27008.0	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	7.70879305552014	7.50952334794021	7.30604480760291	6.87048152893994	6.59215770401906	6.80852654053142	-1.1582562754984	6.76362845517302e-06	0.00028640610508806
Merged-chr11-76497898-4	chr11	76497415	76498415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3420.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	5.9688203260289	5.71147014165821	6.10006829895534	5.93477044535365	5.94498684606541	6.11857859698088	0.120608563410899	0.695554275771392	0.919289041383579
Merged-chr16-93027805-3	chr16	93027360	93028360	+	807.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-201786.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.17968705730134	4.76112788793582	4.32054402409269	4.74658762695692	4.65369603856119	4.83291027909365	-0.158103164726399	0.735999560374139	0.933046642264646
Merged-chr9-40785906-3	chr9	40785333	40786333	+	868.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15440.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.31744418106363	4.25661997712736	4.5404886318412	4.51793892594395	4.50514963482448	4.5665796450767	0.409775088296274	0.346238767335417	0.734515828466387
Merged-chr5-123718554-2	chr5	123718054	123719054	+	747.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027494, intron 2 of 13)	B1_Mus1|SINE|Alu	2490.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	3.12278239150448	3.07196714188886	3.17509946398398	2.98533139916172	3.28642162979261	3.35630026453128	0.407771633292634	0.533585299856068	0.85249065168533
Merged-chr12-111907725-4	chr12	111907225	111908225	+	883.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011625, intron 1 of 16)	C-rich|Low_complexity|Low_complexity	330.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	5.80766013515395	5.33206967397705	5.51089652531733	6.03445095653678	4.83112573696077	5.42475430135835	-0.0656083514133119	0.885854179620509	0.973636976161493
Merged-chr14-70054349-4	chr14	70053858	70054858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-23087.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	5.60455365145573	5.18647525529974	5.17655879917823	5.6447576330263	5.56758576447814	5.58572146649837	0.481082528356576	0.172593217110783	0.551226813025854
Merged-chr4-133887832-8	chr4	133887300	133888300	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285505)	promoter-TSS (NM_001285505)	-3.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	7.24356829968463	7.27120898141683	7.08136357447435	6.7930431985797	6.54444019595764	6.36187217712289	-0.955475685924597	0.00031597562162625	0.00727156350473626
Merged-chr5-115897270-4	chr5	115896793	115897793	+	945.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007708, intron 8 of 46)	intron (NM_007708, intron 8 of 46)	51637.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	2.75552115039258	2.55053438227733	2.84067246573758	2.90761128086338	2.47791317861796	2.59971699663405	-0.232717167646956	0.771111304083504	0.943576844936255
Merged-chr10-22157598-3	chr10	22157103	22158103	+	638.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359809)	promoter-TSS (NM_001359809)	-966.0	NM_001359809	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	3.10761429231473	3.182618053283	3.11148881910126	2.70629894585206	2.48365171537403	2.68906405365458	-3.11002696704153	0.000376221333712924	0.00838367025591456
Merged-chr2-173772528-2	chr2	173772028	173773028	+	721.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34957.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.01659438419287	5.11685344239608	4.80977574051919	4.42634843854853	4.58357836189725	4.5918978330314	-1.06075511936159	0.00937616806664248	0.0961869304018231
Merged-chr4-19895844-4	chr4	19895340	19896340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	26726.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	7.65209367625955	7.70079381332657	7.5238908007165	7.51964769506199	7.86951363363107	7.47765972032206	0.0182948775452131	0.939826642732937	0.986738777817436
Merged-chr8-72522096-1	chr8	72521596	72522596	+	564.0	f1_balb.idr	intron (NM_027485, intron 1 of 2)	RMER6A|LTR|ERVK	26214.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	3.37608872773476	3.55529151585874	3.86622461799098	3.68552621826268	3.69168830435197	3.79155929475744	0.395473890393831	0.490980488040304	0.830305153117851
Merged-chr15-11398756-2	chr15	11398256	11399256	+	700.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033074, intron 1 of 18)	intron (NM_033074, intron 1 of 18)	902.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	2.64367292874647	2.86657890640092	2.86183994553723	2.78842137318064	2.92723658615362	3.05064313174907	0.645485062178245	0.372556181398086	0.756402770460239
Merged-chr9-121308263-2	chr9	121307763	121308763	+	744.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10761.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	2.66758892902928	2.56181930764782	2.53301025465221	2.83799126870994	2.68717058064217	2.92135240799482	1.21674038893872	0.111743346436464	0.446458291092157
Merged-chr17-65838911-1	chr17	65838411	65839411	+	760.0	f1_balb.idr	non-coding (NR_104465, exon 18 of 19)	non-coding (NR_104465, exon 18 of 19)	46012.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	2.78943236067622	2.74762204909736	3.13867672310407	2.72459563300469	2.78753796755529	3.26138523645182	0.198440840275285	0.795031806815398	0.950977844444051
Merged-chr10-117983508-3	chr10	117983010	117984010	+	898.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	58051.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	5.52279086589099	5.39480583561672	5.70117988901105	5.35338062208645	5.5501311715656	5.24461664608624	-0.264042752022065	0.446015308080146	0.805519011576263
Merged-chr13-33084779-2	chr13	33084279	33085279	+	634.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	676.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	3.90496724583197	3.83825131216611	4.04998101336085	4.46240584401619	4.5720687575237	4.30971726686994	1.5010874391342	0.00162343950228426	0.0263474066912558
Merged-chr7-120984655-4	chr7	120984151	120985151	+	923.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	2142.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	5.13114014615185	5.04772615702514	4.78084351658811	4.80523274494829	4.90342640910495	4.72451211357595	-0.40626307099149	0.302250388092595	0.698958713820873
Merged-chr2-52945469-3	chr2	52944973	52945973	+	712.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87605.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.66724266703154	4.45390454894748	4.50655186096311	4.37996268457925	4.31002632152176	4.44641030952223	-0.438979612909938	0.311366894371741	0.706465219571547
Merged-chr15-74933639-6	chr15	74933136	74934136	+	798.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21415.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	4.91251904752587	5.03253979561344	5.69323553105106	7.12157016273451	7.72309727196346	7.19676959885647	3.67763718110502	7.84512967786725e-24	1.05286701650964e-20
Merged-chr4-133625792-2	chr4	133625317	133626317	+	770.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	7612.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.60120653214207	3.74517078323486	3.76494141382612	2.94136323545284	2.8312607829338	3.12773733685575	-3.75477638591393	4.60607003346589e-06	0.000206276574458896
Merged-chr17-83668129-4	chr17	83667644	83668644	+	977.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-36249.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	4.39670305823495	4.5331133870425	4.31888796367688	4.52612181778787	4.56589697115119	4.71822618803767	0.436429550092187	0.310362450628145	0.705829393476587
Merged-chr12-99333671-4	chr12	99333184	99334184	+	720.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	116390.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.41368368747406	3.14502943063719	3.76675024922084	3.29922645266883	3.25271246894514	3.54690962184509	-0.345247832982373	0.595884828921511	0.879742965115467
Merged-chr12-73671719-4	chr12	73671202	73672202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	AmnSINE1|SINE|Deu	86906.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.4800089840551	5.53515614239564	5.64225518917857	5.22998360326227	5.14155917270982	5.02487651210535	-0.81134222534577	0.0187854934457017	0.155168984406751
Merged-chr1-152770990-3	chr1	152770500	152771500	+	691.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026369, intron 2 of 3)	intron (NM_026369, intron 2 of 3)	4458.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	3.76864619213728	3.83259302799717	3.84725930183189	3.72114315275431	3.49922835810004	3.91592000485585	-0.339908854920913	0.535425728127718	0.853546325121679
Merged-chr3-137867778-7	chr3	137867244	137868244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033155)	promoter-TSS (NM_001033155)	69.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	6.91872019825708	6.87874908140009	6.8385964819873	7.33419754507119	7.08998774818603	7.35082090470747	0.570980733695898	0.0197906603528602	0.160289878192576
Merged-chr9-90262754-4	chr9	90262233	90263233	+	855.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	L1MA4|LINE|L1	8036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.18953647933876	4.85306799026011	5.38205517646069	5.53438861510937	5.61620473486673	5.22450583401414	0.654359594017647	0.0841778398319015	0.383858699881233
Merged-chr5-148547315-2	chr5	148546815	148547815	+	819.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	PB1D10|SINE|Alu	4358.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.8415162066256	5.76294848604222	5.64976051479611	6.36264527800625	6.54700705657345	6.24881158332223	1.09289131440361	0.000218991226842842	0.00539107159856189
Merged-chr4-11485893-4	chr4	11485409	11486409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347055)	promoter-TSS (NM_001347055)	-49.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	6.59989564977906	6.80357198496298	6.47720947266095	6.77640825441426	6.84833128410064	6.72677623223029	0.228392792290362	0.384202884189808	0.765357842816299
Merged-chr2-83724923-3	chr2	83724434	83725434	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 1 of 29)	CpG	537.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	7.04591263218658	7.10064427279077	6.97927662011144	7.11424160815282	7.07985394634841	7.25016216437645	0.149573029081485	0.529486442598345	0.850908857518262
Merged-chr3-144588904-2	chr3	144588404	144589404	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053102, intron 2 of 4)	MTD|LTR|ERVL-MaLR	18477.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.08617133998485	5.22020536834652	5.09272328301668	5.07069965764921	5.11733663467084	5.12300391654435	-0.0711359715833559	0.842371467166046	0.963014702903935
Merged-chr15-99449488-3	chr15	99448994	99449994	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	8254.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	3.6197560180518	3.86527177484681	3.76080322297593	3.69733389728321	3.82751315178702	3.92896207815924	0.209715854420842	0.694810349184448	0.919217788511748
Merged-chr4-117914231-2	chr4	117913731	117914731	+	563.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146152, intron 1 of 19)	intron (NM_146152, intron 1 of 19)	768.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	3.38517209218145	3.35118036478438	3.33326050067931	3.31572840618117	3.34588833007218	3.45932975001894	0.0540217921838411	0.927511943534444	0.983584626679457
Merged-chr14-54748479-3	chr14	54747976	54748976	+	834.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	33410.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	3.72807503210903	3.73923495206556	4.05677224789502	3.92956496713362	3.78417280818602	3.93966981527803	0.131737606728631	0.802418918917209	0.953198534492307
Merged-chr8-25597064-4	chr8	25596571	25597571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173012, intron 1 of 10)	CpG	416.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	8.71634580264047	8.81309102727605	8.54377211142952	8.48499239016588	8.82330456883469	8.58330685357143	-0.078365441954926	0.721310818135633	0.928451291671431
Merged-chr2-172399480-5	chr2	172398975	172399975	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5681.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	4.06466429885217	3.77371565018276	3.57994173626066	3.81162333426342	3.84713090838128	3.97119699200168	0.140891166333854	0.797814908923978	0.95181421173875
Merged-chr2-155273525-3	chr2	155273008	155274008	+	957.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2856.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	3.51786371262931	3.4534988602923	3.97024536493325	3.37952392478106	3.35302916721352	3.40150939522682	-1.02560525196399	0.0939653638453865	0.408370938830404
Merged-chr11-114909667-2	chr11	114909167	114910167	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	19626.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.52160371907713	6.34409348326081	6.3477700716971	6.58293091365236	6.40218756700826	6.15537132488737	-0.0164084718927206	0.954121600591591	0.989495550016789
Merged-chr12-11277405-3	chr12	11276903	11277903	+	874.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361252, intron 4 of 9)	intron (NM_001361252, intron 4 of 9)	11517.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	4.00982974284165	4.33844765549612	4.22214994069786	3.94747151568665	3.86880653267137	4.2012326505627	-0.560408274410037	0.263441308438829	0.661383847170923
Merged-chr19-11803220-4	chr19	11802709	11803709	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286543, intron 2 of 11)	B3|SINE|B2	16194.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	5.507860343744	5.78881504498038	5.35369907657058	5.4298446370345	5.38504059796593	5.75386852250389	-0.0955488557059411	0.786739443330193	0.948588132335696
Merged-chr11-118462473-2	chr11	118461973	118462973	+	656.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7478.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	5.06551220451666	5.17287969260917	5.36915242919103	4.90184929515435	5.01423091618986	5.50935411645115	-0.0931014777398613	0.814671788864794	0.956369939298364
Merged-chr1-91758848-3	chr1	91758341	91759341	+	807.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42620.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	3.88021478608495	4.05179779323085	3.87439457345664	4.15071775268444	4.1065976429608	3.99571999622084	0.435213889142532	0.379319092507395	0.761750809705925
Merged-chr6-29793916-2	chr6	29793416	29794416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	B1_Mus2|SINE|Alu	25473.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.97975161871696	6.31102855494028	6.30048848365828	6.72552119661061	6.65840815875743	6.54587215056537	0.72547856383108	0.00956125728956111	0.097425066929929
Merged-chr2-75776306-2	chr2	75775806	75776806	+	815.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55871.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	5.83512292721394	5.79019337371623	5.91753082924059	6.26462160455222	6.39929697886109	6.44914207372767	0.900136192628147	0.00155624743851102	0.0254205411981988
Merged-chr9-77835945-4	chr9	77835444	77836444	+	773.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	81409.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.07819645040416	2.99580697154728	3.14357007903022	3.02677209937457	2.77115693961913	2.92047867335465	-0.780042262831745	0.26017006058411	0.657649400461384
Merged-chr13-62558558-4	chr13	62558072	62559072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162911)	promoter-TSS (NM_001162911)	57.0	NM_175252	77117.0	Mm.440905	NM_175252	ENSMUSG00000074865	Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding	4.19788647411075	4.15642050037461	4.1879284517936	4.10561125330612	4.07484656791815	4.34279384691919	-0.0270308671967962	0.954186000226602	0.989495550016789
Merged-chr5-88722331-2	chr5	88721831	88722831	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026735, intron 1 of 5)	intron (NM_026735, intron 1 of 5)	1460.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	3.04266136041846	3.19588572733529	3.13238410006235	3.13799408686448	3.23863661784386	3.37040164926703	0.525279475061936	0.410749371228352	0.78361591427629
Merged-chr15-12375728-4	chr15	12375203	12376203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54207.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	6.23340849984541	6.46013985241423	6.49553381768142	6.06994042633263	6.21858243797244	6.2192185167515	-0.377718433624602	0.180596986250486	0.562557013357639
Merged-chr6-54867546-3	chr6	54867036	54868036	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50620.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.62840953005993	4.5574262154395	4.2440063412098	4.08888948887291	4.0275504058137	4.01225080587616	-1.23454923909947	0.00944202090959107	0.0966123556130415
Merged-chr3-108445231-4	chr3	108444722	108445722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001204979)	promoter-TSS (NM_001204979)	37.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	7.10613374154569	7.51196537673884	7.02097798625897	7.19466572748993	7.20019203489105	6.77704983709311	-0.237475996388996	0.400132794823456	0.776372018141352
Merged-chr6-134920395-4	chr6	134919920	134920920	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	19.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	8.41451685784612	8.47565324148167	8.25737474412445	8.1497168969019	8.43674948665527	8.21611299954132	-0.155563572094993	0.475895206885882	0.82219557869602
Merged-chr4-123916401-2	chr4	123915901	123916901	+	974.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-1032.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	6.48594314208724	7.02554426117824	6.54776356886952	6.7370967960683	6.85077084119496	6.55319764125658	0.0114179427388401	0.969154537083474	0.992995172144871
Merged-chr1-44101643-3	chr1	44101151	44102151	+	903.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029368, intron 2 of 7)	intron (NM_029368, intron 2 of 7)	790.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	6.08953210984493	6.05644935846885	6.22020621466444	6.1061620230186	5.95306150103972	6.1581816546181	-0.0860358846752308	0.765391711106466	0.942148336413151
Merged-chr1-134065476-4	chr1	134064971	134065971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13684.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	7.26606453448879	7.12031265785641	7.13119736366129	6.9800066929521	7.28580486393605	7.15150834476493	-0.0396115970364523	0.87158281932775	0.970227816594767
Merged-chr2-80079789-4	chr2	80079266	80080266	+	952.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-40864.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	6.21337954887307	5.90047493501187	5.69840268622223	5.96156842977412	6.02660764750505	5.73337502701094	-0.0770016611299477	0.813481944391607	0.955940138311315
Merged-chr11-23067851-4	chr11	23067354	23068354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	54467.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	4.17470361881787	4.19937820813419	4.40675853116571	4.18425836096392	4.13530352372285	4.39099703088286	-0.0655748875482285	0.888142842386721	0.97401529899353
Merged-chr12-102437181-4	chr12	102436684	102437684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	RSINE1|SINE|B4	2629.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.48029115219486	8.29998051259933	7.81811036144683	8.31081475135072	8.53621197000796	8.15726720353654	0.156319047227944	0.552442172360352	0.861725957173409
Merged-chr2-72978624-4	chr2	72978120	72979120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	661.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	7.42346293742064	7.27887074117466	6.98576720131161	7.34229740117486	6.90123146146829	6.97281917143678	-0.242640749399525	0.376023309551994	0.758951282467405
Merged-chr6-51881365-4	chr6	51880852	51881852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018773, intron 9 of 12)	intron (NM_018773, intron 9 of 12)	131197.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	4.02817179751157	3.90671605880441	4.08980598424655	3.62139117746141	3.89122170315201	3.92382613767743	-0.579727946512718	0.267796364499814	0.664975925109882
Merged-chr9-40241240-2	chr9	40240740	40241740	+	563.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27976.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.89108978417074	2.74875698427526	2.9712096354216	3.06778135086471	3.09369894452272	3.15984010276361	1.12820060123716	0.100347067260086	0.422447699093208
Merged-chr14-122009703-4	chr14	122009185	122010185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 8 of 8)	ORR1D2|LTR|ERVL-MaLR	-24989.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	6.06492872700326	6.32733346610239	6.15380624463846	5.77182652415821	6.08985216973877	6.08567993583613	-0.337588041058426	0.264608551280216	0.662558796858873
Merged-chr12-112808879-4	chr12	112808349	112809349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145450)	promoter-TSS (NM_145450)	-126.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	3.06379302371363	2.7439074486632	2.98627186220091	2.89695776094457	2.91609250100253	2.99962090945816	-0.00473514786036302	0.994626615954513	0.998961028701257
Merged-chr16-37868329-4	chr16	37867834	37868834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177093)	promoter-TSS (NM_177093)	-66.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	8.72760634591817	8.67447704763416	8.48696535618719	8.66824369573817	8.32659886703172	8.23425713575959	-0.291280204298574	0.204822636475959	0.595509344697286
Merged-chr11-74469195-3	chr11	74468684	74469684	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 3 of 24)	ID_B1|SINE|B4	104513.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	3.35123688991008	3.29099324567182	3.73155235147712	3.17232291634933	3.08449190511616	3.51072202435803	-0.797687534754131	0.22492350232666	0.619819002536735
Merged-chr2-151979953-7	chr2	151979449	151980449	+	962.507935	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146127, intron 1 of 1)	CpG	270.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	5.4418714880959	5.60871488907831	5.96790391511067	5.43735770569829	5.57415285322274	5.54099760162346	-0.29717626608358	0.388741000841868	0.768632492884303
Merged-chr2-37451475-2	chr2	37450975	37451975	+	575.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-779.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	5.08606149351042	5.12073132518592	4.86960625456196	5.02350463397344	5.12850973586913	5.48306007040348	0.369890073454757	0.335521958423137	0.725694211280635
Merged-chr2-167775421-4	chr2	167774930	167775930	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84253.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.43383255068133	8.04403552291394	7.97173251307257	8.24280884405285	8.1017056972257	7.84021738294	-0.133480934425924	0.59409924727469	0.87882660002802
Merged-chr1-45881534-4	chr1	45881033	45882033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44061.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	7.72921499929174	7.46675514677604	7.26632011409729	7.51838572666953	7.65562944324105	7.39314733124331	0.0338246774423142	0.89272382343949	0.975146620821922
Merged-chr2-31759906-4	chr2	31759405	31760405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283045)	promoter-TSS (NM_001283045)	-34.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	7.0078644726538	7.07117225710483	7.3144453187742	7.07092312284317	7.1166630415206	7.19137452622915	-0.00776405506964427	0.974651948643685	0.994296985713596
Merged-chr6-145746558-7	chr6	145746045	145747045	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-61838.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	5.73749736378184	5.55562138187276	5.58906581824564	5.08041358687845	4.60415471850068	4.82867037660869	-1.61161575056045	2.15432917891688e-05	0.000777154050636566
Merged-chr8-36250234-2	chr8	36249705	36250705	+	672.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-689.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.71122650238408	6.56606024552642	6.26776299709647	6.55609288484372	6.61537433619965	6.50519005526613	0.0373554610300085	0.89295857097306	0.975146620821922
Merged-chr12-86949698-3	chr12	86949184	86950184	+	791.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	2341.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	5.08039908185813	5.31078736624484	4.87324961015783	4.88032816780521	5.09668326116187	4.69058489168657	-0.420007365154585	0.30168278045523	0.698377118776631
Merged-chr7-143056757-2	chr7	143056257	143057257	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3071.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	4.69376053315358	4.58131696762082	4.99196793849336	4.79107552834392	4.79091816640899	5.11939785386906	0.327103886107618	0.429278723332979	0.795682190695026
Merged-chr2-116943372-6	chr2	116942847	116943847	+	864.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	43195.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.3385426558677	7.29718834455287	7.26843000514865	7.1494861548342	7.33903422353368	7.0784637478601	-0.150884869764511	0.524539906296685	0.848725345027108
Merged-chr7-35031423-2	chr7	35030923	35031923	+	931.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008820, exon 12 of 15)	exon (NM_008820, exon 12 of 15)	25143.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	2.77037026491494	2.8832872098623	2.81647262253241	2.85153171547648	2.76933427146332	3.17715602503121	0.546780869754474	0.449750319802073	0.808012616706586
Merged-chr15-100612061-4	chr15	100611547	100612547	+	805.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3063.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	4.80809244968632	4.50870330575855	3.86799223790733	4.04263234855185	3.99704074969783	4.25807809418682	-0.951657074195859	0.0841901442246973	0.383893770311739
Merged-chr6-89282275-3	chr6	89281776	89282776	+	853.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	3449.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	5.98269199331112	6.25118430726635	6.49550963564418	6.01981741882653	6.007699345319	6.45428214876856	-0.142311474594443	0.658655913676485	0.905024110242537
Merged-chr19-34517415-4	chr19	34516901	34517901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10073.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	6.77245212852761	7.07134575366826	7.14011162659758	6.94199079170857	7.37207519362059	6.97732336062003	0.184028688615729	0.503708216870459	0.837146033423024
Merged-chr6-136555785-4	chr6	136555296	136556296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36945.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	5.83629527438133	5.69254372412938	5.26881085955334	5.34176650210367	5.49633414329843	4.99623196078901	-0.616028230174818	0.108955827778555	0.441063868269437
Merged-chr6-145857647-3	chr6	145857139	145858139	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_024469)	TTS (NM_024469)	7781.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	2.7346000949665	2.9071354433232	2.63967516426826	2.69814418772053	2.64231210797387	2.83931049604616	-0.236467477469843	0.752215471942375	1
Merged-chr8-123859374-6	chr8	123858790	123859790	+	967.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_028536, exon 2 of 4)	exon (NM_028536, exon 2 of 4)	919.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	6.13719943770003	6.37791335733264	6.2141140570367	6.2662595027241	6.22470430825951	6.37225578984441	0.0566114443288394	0.839925239920525	0.962784121274377
Merged-chr4-47273528-2	chr4	47273028	47274028	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	PB1D10|SINE|Alu	65516.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	2.98815098589053	2.93956129319093	3.0297072242085	2.98321500646536	3.00336818422582	2.98291108315801	0.0297685302956613	0.964370767244289	0.991466661735029
Merged-chr1-173763276-2	chr1	173762781	173763781	+	705.599976	f0_c57.idr|f1_balb.idr	intron (NM_008329, intron 1 of 8)	Lx8|LINE|L1	3638.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	2.77803575566836	2.92090990858276	2.94622235966998	3.67710250720821	3.93493984411278	3.58176947236905	4.44097882999816	1.02223225356416e-06	5.51965615539045e-05
Merged-chr4-134767113-2	chr4	134766613	134767613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	891.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	6.15297106935018	6.44416978952509	6.37315287036769	6.44106404666154	6.37937424549775	6.65499891083725	0.262362426125695	0.351789537836859	0.739445861272404
Merged-chr5-64751395-3	chr5	64750882	64751882	+	761.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52141.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	2.61941330649235	2.65843578393599	2.83535616982077	2.89599945898713	3.03006681074689	2.90863822996869	1.28692751146596	0.0779948114819311	0.368771853778895
Merged-chr12-25096200-4	chr12	25095724	25096724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010496)	promoter-TSS (NM_010496)	-132.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	7.81799673297328	7.94651383981639	7.81643150248101	7.58615330741451	8.05813911910251	7.78883300395842	-0.0446155757234531	0.852878057226898	0.965546660322955
Merged-chr1-165768490-4	chr1	165767991	165768991	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 2 of 4)	B4A|SINE|B4	4733.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	6.21002428297557	5.84249062135753	6.25745525868247	5.96974653936235	5.72729520682863	6.05270356359831	-0.339186712613687	0.286084816724173	0.68342985932029
Merged-chr17-34304916-4	chr17	34304425	34305425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-942.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	7.12115425653296	6.51396928796247	6.58463804897046	7.84858954717303	8.01385085068277	7.31067272226225	1.46343123462356	3.30805791819779e-06	0.000154378509959283
Merged-chr1-46853614-4	chr1	46853105	46854105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	13.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	8.43431778342227	8.49091841558758	8.1538958805976	8.26240251189694	8.2771778557922	8.20286111267673	-0.174285338732635	0.420258032684015	0.789521469804967
Merged-chr11-90234672-4	chr11	90234148	90235148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3b|LINE|CR1	-14828.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	6.59842391969688	6.53096690185699	6.62973592260742	6.45021562503941	6.53397922040696	6.19790068000421	-0.275761646741588	0.312259925250482	0.707056878336701
Merged-chr19-5367641-2	chr19	5367177	5368177	+	633.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_104482)	promoter-TSS (NR_104482)	-801.0	NM_011793	23825.0	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	4.83545337747826	4.90737095300784	4.99027554613376	5.1918537783228	5.22550728146458	5.22279480040424	0.648656275624012	0.0731220513090807	0.355393670871845
Merged-chr2-31130935-3	chr2	31130458	31131458	+	845.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	11050.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.39579381534629	4.13327267343892	4.58980858776747	4.17272898234604	4.16112986831827	4.95714166450912	0.243652524483413	0.645621073025957	0.900657290738149
Merged-chr1-79768388-3	chr1	79767890	79768890	+	784.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6621.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	3.9653967168751	4.37167686560237	4.32417980781179	3.68841315297514	3.75459101395337	3.6069057606548	-1.6713152019136	0.00231025990161808	0.0344970986001264
Merged-chr9-45183981-2	chr9	45183481	45184481	+	745.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145403, intron 4 of 12)	intron (NM_145403, intron 4 of 12)	-11785.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	4.13311097782684	3.94526131854338	3.89369973339585	4.08066121237083	3.89537968711385	4.28968430143964	0.261316324024512	0.607404726839506	0.884581207370863
Merged-chr5-75045506-2	chr5	75045006	75046006	+	652.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	-865.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	3.38239226557122	3.11286011722196	3.18862292875923	2.99853255770068	3.10042445679845	3.31620704440528	-0.400417789368367	0.542946238439099	0.857468369859798
Merged-chr2-156310383-1	chr2	156309883	156310883	+	554.0	f1_balb.idr	TTS (NM_172674)	TTS (NM_172674)	-2090.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	4.94062555937357	4.76891343854078	4.70008274921477	5.59323867404104	5.5149573758156	5.26231094603206	1.35862929742108	0.000282583036848447	0.00662529426037914
Merged-chr16-30510875-5	chr16	30510527	30511527	+	999.159973	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_172614)	TTS (NM_172614)	39551.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	8.57787903153518	8.82889748415856	8.19622772225231	7.91465787954218	8.05476899424171	7.78706287771648	-0.895823201891289	0.000388479547554357	0.00859925676852966
Merged-chr2-151536065-4	chr2	151535586	151536586	+	848.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6397.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	4.16008142831372	4.10156740455171	4.51211624215101	4.02846280601986	3.98339005192639	4.57693754693692	-0.130936934612005	0.801368425548883	0.952929144440384
Merged-chr7-27447842-4	chr7	27447346	27448346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144923)	promoter-TSS (NM_144923)	-132.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	6.7437800330868	6.4992071582122	6.4910125237395	6.52145865776866	6.8743077280731	6.22752120901609	-0.00313652645501713	0.991787679447046	0.998351393644539
Merged-chr16-36717659-4	chr16	36717188	36718188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	23710.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	7.23275532231679	7.17938291108	6.95357445687063	6.87197787740198	6.9591519191992	6.95544557588581	-0.312078134330458	0.203447026995614	0.593417471947666
Merged-chr6-72958439-4	chr6	72957946	72958946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039392)	promoter-TSS (NM_001039392)	37.0	NM_025284	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	4.35799482252007	4.04347588552283	4.10651028631114	4.21545538961526	3.71008493167141	3.92622767497585	-0.619534322258258	0.241366548289467	0.638385260200477
Merged-chr9-43108294-1	chr9	43107794	43108794	+	644.0	f1_c57bl6.idr	TTS (NM_001034863)	TTS (NM_001034863)	-2576.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	3.21701272621549	3.04944562250739	3.1479187898635	2.74379181522865	2.9326043860671	3.27385085136855	-0.638136302549073	0.377594135756154	0.759978294360939
Merged-chr5-86085163-4	chr5	86084663	86085663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310639, intron 3 of 7)	intron (NM_001310639, intron 3 of 7)	13417.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	4.52140286041883	4.12964606908064	4.36602904761672	4.86884334048591	4.37118202171629	4.83260729889271	0.871128910950021	0.0645060874444299	0.331036297278656
Merged-chr1-37891534-2	chr1	37891034	37892034	+	692.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356482, intron 1 of 4)	B3|SINE|B2	1057.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	3.31230678420801	3.54259122977227	3.57415496365514	3.50887813836138	3.50091950047166	3.3694476535583	-0.0507328270452946	0.931494082490261	0.984925910690137
Merged-chr8-95333591-2	chr8	95333131	95334131	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	1347.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	4.03036899558753	4.13142497169472	4.27019757545025	4.34104733170023	4.23675808439285	4.00465073533852	0.184944687417883	0.700849904283479	0.921028048562707
Merged-chr10-14209620-4	chr10	14209112	14210112	+	719.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	243233.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.96938218459803	2.72791368099841	2.88713665607715	3.08820503152951	2.91243645013362	3.19410941124758	0.945099437883596	0.180657093262151	0.56265140611016
Merged-chr19-37147359-4	chr19	37146865	37147865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198300, intron 2 of 10)	PB1D9|SINE|Alu	-26478.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	6.05561598840975	5.82492722297502	5.64403293491825	6.08806471414857	6.26096696387735	6.06585470338799	0.490204801085572	0.113200547817152	0.44938889230771
Merged-chr11-115703645-2	chr11	115703145	115704145	+	736.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	ORR1A4|LTR|ERVL-MaLR	-3717.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.71940154414683	4.47011862231927	5.17300367423464	4.64933321589059	4.58818976747975	5.02297755996796	-0.114272316867666	0.802968919593426	0.953422605427866
Merged-chr9-21241513-4	chr9	21241009	21242009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2177.0	NM_001110306	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	2.97805429631	2.87213957614503	2.77251106861666	2.82515491777326	2.97970055731692	2.96931622494581	0.225491062958901	0.748911599398137	0.93711275444937
Merged-chr13-90058558-2	chr13	90058058	90059058	+	813.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31050.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	4.87312602235901	4.99411091189101	4.54607405757699	5.32648728145878	5.43066209540257	4.99972973845089	0.932680799782453	0.0221844993416295	0.172905308244481
Merged-chr11-106562267-2	chr11	106561767	106562767	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	50663.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.55225045418411	5.74456192185576	6.12362816368693	5.43579718426724	5.37389033203867	5.59147288626273	-0.657048054346442	0.0592482862062191	0.31531380867586
Merged-chr5-112266391-7	chr5	112265908	112266908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-10283.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	7.72082152482041	7.6612133267023	7.74571068175769	7.76703701878867	8.01231485728285	7.71423360695644	0.196160112769886	0.384205810672493	0.765357842816299
Merged-chr9-46009121-6	chr9	46008654	46009654	+	723.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357241, intron 1 of 5)	RMER10A|LTR|ERVL	3536.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	5.87843805021467	5.29078283068622	5.30191847589634	5.83434445126092	5.94295717830663	5.95230456204179	0.685626123985222	0.0555132179123944	0.302994020075731
Merged-chr4-133873089-4	chr4	133872577	133873577	+	982.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	1654.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.37472434317777	6.30210584423825	6.54275788138161	6.08740391228452	6.30978118877954	6.75120262170542	-0.00251978774938663	0.99354795576859	0.998702045803685
Merged-chr11-32542957-4	chr11	32542456	32543456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9690.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	6.79582735809501	6.75604224909174	6.91484021938365	6.94949036243785	7.00670781655658	6.66610852004817	0.112852965436353	0.661897691102836	0.906495637422278
Merged-chr2-171633556-3	chr2	171633057	171634057	+	946.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	329242.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	3.29593078038153	3.10851839612339	3.23201236093305	2.77366442240894	2.61816887282167	2.7599711171972	-2.74773876323805	0.000573398537394258	0.0117054331451181
Merged-chr19-10880260-4	chr19	10879750	10880750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	1493.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	5.52069688358669	5.40273212502629	5.44173580558031	4.94115062923222	5.37073627469821	5.15778076643575	-0.550059399377102	0.129902665463073	0.482090048965319
Merged-chr4-117156631-2	chr4	117156131	117157131	+	583.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	-499.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	6.21695850956631	6.41364284245067	6.37566422322459	5.98989467989161	6.2025154465907	6.24272311877417	-0.314923736345023	0.268238332696426	0.66531966666826
Merged-chr13-52599576-2	chr13	52599076	52600076	+	797.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	2694.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.96418761284766	6.0536357689023	6.45639347638544	5.85697769238147	5.55760771299495	5.67638467352239	-0.818615749113609	0.0126430482896562	0.118482122095474
Merged-chr18-73749613-3	chr18	73749119	73750119	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	4860.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	3.41592975046543	3.35798340290518	3.90997782325053	3.51514482994089	3.26073565436803	4.06168684084856	0.241534549550527	0.718557069174227	0.927402544945102
Merged-chr18-84293143-4	chr18	84292636	84293636	+	913.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	204978.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	5.64623916376547	5.95835884962913	5.43430408857684	5.70778009617975	5.69949299714796	5.33331202258288	-0.198261418570104	0.576413243507658	0.871585692229598
Merged-chr8-92854902-4	chr8	92854401	92855401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	-432.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	7.44024866104988	7.77594209726693	7.79891382295087	7.87298648010937	8.18613343281381	8.073980248156	0.534008665916715	0.0260102790610744	0.191290728311285
Merged-chr1-157444476-2	chr1	157444017	157445017	+	745.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14051.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	6.00256510860759	6.02978069390133	6.14152676446939	5.46643823908753	5.85443286191317	5.26892170341141	-0.861387796397313	0.0132692626477166	0.122363687938141
Merged-chr4-143210901-3	chr4	143210395	143211395	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1814.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	4.62172457884205	4.47280961867258	4.8215417774493	4.64196986890759	4.54678102764676	4.85066623170499	0.094112702990022	0.824145156041162	0.958519061691713
Merged-chr13-5863741-4	chr13	5863223	5864223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	2234.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	8.07301970253788	8.20555136244045	7.54468187397372	8.1116048376903	8.23801017435352	7.97992478958915	0.192427206158671	0.461906541514573	0.815107818354545
Merged-chr9-123808766-4	chr9	123808273	123809273	+	941.9833369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030712, intron 1 of 1)	intron (NM_030712, intron 1 of 1)	2296.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	6.18110674793341	6.42788361514453	6.29191928497577	6.18701804200113	6.48096151739153	5.99956794898438	-0.087247655626048	0.772963939808686	0.943947157209128
Merged-chr9-111552053-4	chr9	111551533	111552533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	112952.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.17854544525503	4.48091719608746	4.5605148768551	4.79556797914189	4.70823521141325	4.75410746980272	-0.0861635615734785	0.849878638935729	0.964746847431705
Merged-chr19-46152391-4	chr19	46151889	46152889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178930)	promoter-TSS (NM_178930)	-169.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	5.61508411229155	5.52864171773935	5.16666349247179	5.76024407075849	5.64686537158674	5.33836635084928	0.261291397562848	0.465971018157726	0.817283042094577
Merged-chr11-71251506-3	chr11	71251020	71252020	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027858, intron 8 of 12)	RMER21A|LTR|ERV1	-20787.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	3.45551844352337	3.31172991523941	3.65027152977062	5.2945847668278	5.21830695717221	4.751580073388	6.66616382355101	1.18538485365115e-10	1.57059717997778e-08
Merged-chr16-87623929-4	chr16	87623436	87624436	+	831.895813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL4|LINE|L1	70606.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	5.32310186853646	5.53172841234924	5.51213564284566	5.35213890627055	5.19772544381267	5.10077627971002	-0.459391795936237	0.187258146302575	0.572185054142865
Merged-chr11-121434952-4	chr11	121434451	121435451	+	985.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022014)	promoter-TSS (NM_022014)	-2.0	NM_001038699	63828.0	Mm.266448	NM_022014	ENSMUSG00000025175	Fn3k	2310074G21Rik	fructosamine 3 kinase	protein-coding	2.40123224686883	2.59245131770169	2.68838175032998	2.54968601135154	2.23110692725797	2.57821657349893	-0.621056213340886	0.467517614885871	1
Merged-chr11-115187344-4	chr11	115186847	115187847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	-31.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	8.8063581996086	8.52928601649455	8.28491830238936	8.4354123070073	8.81113333860219	8.26206479333728	-0.0443948181923704	0.864434330245087	0.968278303984855
Merged-chr2-32882801-4	chr2	32882274	32883274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	6640.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	5.4047935865997	4.84932236271776	5.35751791854471	4.72013001648105	4.61436265009736	4.75242224635709	-1.16125947300646	0.00497986532215731	0.0610526939334117
Merged-chr15-8433607-6	chr15	8433170	8434170	+	859.952759	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	10793.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	5.25099409456822	5.37840678488297	5.58950106340246	5.61450078595816	5.34077588651233	6.0407278753005	0.524705812991859	0.160851708904487	0.533594426285713
Merged-chr9-89221015-4	chr9	89220519	89221519	+	886.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	9635.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.60816846662914	5.84191366715459	5.147679061386	4.82426876606708	4.55458282479424	4.60041911244235	-1.92255049899302	2.99539167106068e-06	0.000141775056977029
Merged-chr17-33941706-1	chr17	33941206	33942206	+	856.6666869999999	f1_c57bl6.idr	exon (NM_020603, exon 5 of 15)	exon (NM_020603, exon 5 of 15)	983.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	4.7196424628122	4.6365072966899	4.78808069744246	4.46344666874529	4.2308074688795	4.45928983116511	-0.824795343009315	0.0542476456382534	0.299079907288926
Merged-chr5-143818182-1	chr5	143817682	143818682	+	1000.0	f0_balb.idr	Intergenic	CpG	-53680.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	7.1239971531692	7.31517258544705	7.51942614278689	7.46957567174109	7.33106110855132	7.3516606800547	0.0926059551526027	0.703974468661825	0.922296896558746
Merged-chr6-145123916-4	chr6	145123427	145124427	+	864.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	2188.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	4.19364261910478	3.9562657466391	4.22826934548718	4.10053179076613	4.12325611831756	4.42078232116326	0.245001925030226	0.613953562029823	0.887338990172734
Merged-chr1-180904239-4	chr1	180903744	180904744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133705)	promoter-TSS (NM_133705)	-30.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	5.91272405163551	6.1381202500931	6.41336695263195	6.1804100967548	6.40825096139196	6.41948808857872	0.301239293057869	0.318985326974476	0.71299004032015
Merged-chr6-89257066-4	chr6	89256571	89257571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28654.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	7.69696422627853	7.92930391131159	7.56006345056791	7.52021399054434	7.7606990310031	7.74577449832626	-0.0924056076835119	0.698601644609391	0.920392761604545
Merged-chr3-96302816-4	chr3	96302316	96303316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8847.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	5.63407262760923	5.46564994106527	5.54730830300054	6.05919432680446	6.37134191857205	6.07115657878617	1.12319411786653	0.000310704098140899	0.00717741993284507
Merged-chr10-8011756-2	chr10	8011256	8012256	+	563.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	-55633.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	3.82606933209542	4.1716399861449	3.83357274066947	3.63784579983475	3.55523632700466	3.85293670829224	-0.908161030469253	0.0991183609363551	0.419760617939327
Merged-chr9-65357130-4	chr9	65356558	65357558	+	994.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016688, intron 4 of 4)	B1_Mus2|SINE|Alu	-4002.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	5.99464762226562	6.09355223252368	6.00210825358191	5.57125776771947	5.94621798461953	5.44231089409424	-0.605464271511758	0.0681935218873837	0.341659453091987
Merged-chr3-109254154-4	chr3	109253655	109254655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86528.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.53873044390784	6.96275899298921	6.37910054205237	6.61112722701346	6.81896260595667	6.62430051157241	0.0469390803132486	0.873376219264736	0.97040331531529
Merged-chr1-156985922-2	chr1	156985422	156986422	+	769.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46296.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	3.9888105299897	3.64321966024726	3.63216223923288	4.17741071756653	3.89502017610711	4.16228583270847	0.938756475516809	0.0849987649163676	0.386115016084723
Merged-chr12-73610243-4	chr12	73609740	73610740	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	25444.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.65180916792371	5.31212733239572	5.33581370092145	5.06798917472558	4.63076703613553	4.95958853050723	-1.15535593918328	0.00299838913711922	0.0421151187240742
Merged-chr12-79351467-2	chr12	79350967	79351967	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54116.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	4.23080827441898	3.77005675706121	3.93000657484829	5.14504808758227	4.65133063595561	4.37388208833771	1.99484902788722	0.000187810825503772	0.00474995840988384
Merged-chr17-5541318-3	chr17	5540818	5541818	+	728.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	48718.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	3.71910832834138	3.23182291235314	3.49206137842271	3.44170126254167	3.34529178159702	3.33739747298505	-0.45860718425914	0.461004256174259	0.814819171734557
Merged-chr10-80744447-4	chr10	80743977	80744977	+	990.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2202.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	5.06359598973479	4.64457935455462	4.94491137870614	5.10900127211652	5.06232940078642	5.08001148201341	0.407761782645732	0.294355142658248	0.691050220322492
Merged-chr14-8109157-3	chr14	8108673	8109673	+	745.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	RMER15|LTR|ERVL	10962.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	4.34303471894919	4.15656101697397	4.38688560892397	4.43851164840387	4.11649256063791	4.23264390898063	-0.0751300864757944	0.872346798674231	0.970261003150518
Merged-chr5-27790378-1	chr5	27789878	27790878	+	1000.0	f1_balb.idr	intron (NM_018878, intron 1 of 20)	intron (NM_018878, intron 1 of 20)	1172.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	3.38002504433481	3.26826354136029	3.03330688112583	3.07447597297025	3.26072018139441	3.28699303123333	-0.125529810364315	0.848453989188523	0.964356989789491
Merged-chr14-73138744-4	chr14	73138224	73139224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3786.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	7.29766623590115	7.09459812106179	7.21864100405892	7.24047147435446	6.98861173314685	6.78218494378158	-0.274673557555292	0.289090714560741	0.686633011876864
Merged-chr5-137683914-3	chr5	137683458	137684458	+	806.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303271, intron 1 of 12)	ID_B1|SINE|B4	795.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	5.09891712742533	4.90176939622392	5.37558363142403	5.24279042176145	5.13306888239595	4.7460199585356	-0.131950563257223	0.744822142163572	0.936032341688524
Merged-chr5-130030024-3	chr5	130029531	130030531	+	797.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007761, intron 1 of 5)	MTD|LTR|ERVL-MaLR	725.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	6.09861534751346	6.28252544856993	6.23042855151656	5.76988237161587	6.3061121936807	6.03356764958898	-0.236376950060743	0.451711037189535	0.809240235595461
Merged-chr7-132315625-4	chr7	132315127	132316127	+	921.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-37.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	5.16678008169034	5.15595029794872	4.60513649813485	5.27381221037134	5.00792210697584	4.58061265152033	-0.0388742909084555	0.931791226457189	0.98494489810252
Merged-chr4-46536116-4	chr4	46535626	46536626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	15.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	6.13408751362279	5.90440929232822	6.29633319370277	6.30053187798286	6.21470891847119	5.99460266225941	0.1194742257791	0.692143625076149	0.918590542007936
Merged-chr2-118025986-4	chr2	118025484	118026484	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	Tigger6a|DNA|TcMar-Tigger	85218.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	3.61552354379936	3.52257990924653	3.64972193115196	3.28605146984827	3.48107366327432	3.08208631596806	-1.10290072004377	0.0920608321754324	0.404182833376811
Merged-chr9-75369426-2	chr9	75368927	75369927	+	774.416687	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	21669.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	3.29319281778966	3.05443130749255	3.48995421842052	3.42778057708425	3.5383254229298	3.34165162755042	0.615819828049179	0.331370029841991	0.722673159460747
Merged-chr10-30620689-2	chr10	30620189	30621189	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2323.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	3.60266596588812	3.2637312493481	3.80641390150139	3.51005904421357	3.47524159586392	3.46910490423595	-0.30443207501461	0.616780798540599	0.888523142052738
Merged-chr6-8688452-2	chr6	8687952	8688952	+	756.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	RLTR51A_Mm|LTR|ERVK?	70006.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	3.42432945848347	3.12662524095424	3.20481987832192	2.96196962894681	3.06314214903803	3.43936668138304	-0.392471349047073	0.564627551138399	0.86651662271215
Merged-chr8-77550347-4	chr8	77549846	77550846	+	990.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081240, intron 1 of 11)	MER20|DNA|hAT-Charlie	949.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	5.65660068442431	5.74256760432937	5.32950063072274	5.62126826815336	5.47200817032169	5.48877140600715	-0.136007436006812	0.687223177181632	0.916996560772578
Merged-chr1-39961438-2	chr1	39960938	39961938	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252202, intron 2 of 29)	(T)n|Simple_repeat|Simple_repeat	60525.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	2.58834957775109	2.51597048161518	2.48316969100942	2.59353876895204	2.44209402468234	2.74325363987357	0.359157950107322	0.64867258790894	1
Merged-chr17-12119227-4	chr17	12118721	12119721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026644)	promoter-TSS (NM_026644)	-63.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	5.7745840415916	5.91788539464943	5.4090997414999	5.09827356098289	5.08045253077663	5.50264998515855	-0.961399211413873	0.0087831982367664	0.0920327866622413
Merged-chr14-50843457-1	chr14	50842957	50843957	+	787.5	f1_c57bl6.idr	intron (NM_009351, intron 27 of 54)	intron (NM_009351, intron 27 of 54)	27097.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.18394084096123	5.12443370565824	5.31221148166246	5.39244309318556	5.9116294231941	5.8348825271112	1.0215124200646	0.00399022765348666	0.051821267768272
Merged-chr17-72920253-1	chr17	72919753	72920753	+	599.0	f0_balb.idr	intron (NM_029999, intron 1 of 2)	intron (NM_029999, intron 1 of 2)	1948.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.9713434862099	3.98988688800399	3.79115939345411	3.6057737568477	3.67794379927083	3.91115155493311	-0.6267153112659	0.240513560066972	0.63757036720849
Merged-chr9-41137248-4	chr9	41136755	41137755	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20807.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.74435187464364	6.39458823853995	6.37947147372308	6.32552932249233	5.99500757894899	5.90587522420831	-0.711530461981432	0.0203037859367451	0.16310459743432
Merged-chr12-34682856-3	chr12	34682332	34683332	+	822.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	Lx8b|LINE|L1	-153943.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.57454339902463	4.51612174798031	4.53812435942808	4.28004140708803	4.46518102959263	4.68231254027847	-0.159898719416733	0.713378128637099	0.92549344587396
Merged-chr17-32364506-4	chr17	32364005	32365005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13928.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	4.7286778769715	4.4337114517313	4.74587521981628	5.03440719572708	4.07849414417581	4.53084836240315	-0.0707967135100951	0.890359042064025	0.974513293810689
Merged-chr11-120086332-2	chr11	120085832	120086832	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 1 of 25)	intron (NM_009734, intron 1 of 25)	495.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	4.7826679483809	4.42945114709971	4.71628265256589	4.57597738807841	4.18887133065188	4.58814487659954	-0.479182972941931	0.292004335789697	0.689253845324812
Merged-chr4-154011812-4	chr4	154011328	154012328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201226)	promoter-TSS (NM_201226)	25.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	7.03817772074415	7.09925743678734	7.31400873080315	7.5425581026774	7.07515101884856	7.05742190335416	0.145759322881555	0.589446107384746	0.876881835468685
Merged-chr11-22858684-2	chr11	22858184	22859184	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1051.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	7.08271178595736	7.16316662120752	6.65537479717994	7.09589414868595	7.25341527371566	7.13083063056302	0.251121005440953	0.345742171486965	0.734152876156979
Merged-chr10-13273927-4	chr10	13273380	13274380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	50409.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	5.40713307241388	5.56337010823829	5.46685047397384	5.67038741167128	5.37701809630832	5.61407525639052	0.134067617690442	0.688295727476504	0.917193226920892
Merged-chr18-4349790-4	chr18	4349332	4350332	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	3121.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	7.33466840529712	7.92220647158943	7.36721263755548	7.67812201888549	7.69354297036098	7.19421232792071	-0.0422326490508403	0.88485177865878	0.973538624783452
Merged-chr15-67092484-3	chr15	67091972	67092972	+	907.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84410.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.65943162817819	4.09942653487101	3.98965249365556	3.46561717171932	3.35457085131141	4.01267548079561	-0.948567684624109	0.126674291696151	0.475603035080468
Merged-chr12-51939363-2	chr12	51938863	51939863	+	667.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 12 of 35)	intron (NM_177171, intron 12 of 35)	31958.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	6.88862528123206	6.81565012941924	6.50361331587541	6.65742680093403	7.03836619509602	6.44783845150461	-0.00259798458294206	0.993066103198239	0.998646946749805
Merged-chr14-45690271-1	chr14	45689771	45690771	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-32128.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	2.41548969391304	2.45689966888324	2.62124624893702	2.73231644925497	2.50384378496079	2.69509579113869	0.86311498797179	0.273341311766818	1
Merged-chr7-46639817-4	chr7	46639316	46640316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013789)	promoter-TSS (NM_013789)	-9.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	4.79905079669383	5.04621087061084	4.94698895214428	4.91728599194095	4.46691687389283	4.34258631241484	-0.756466446089006	0.0869871598110272	0.390918197208789
Merged-chr1-120467528-3	chr1	120467026	120468026	+	758.0888669999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37498.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	2.08021256192736	2.1303605452044	2.03194406794018	2.34883475616411	2.18654734186756	2.50674722596376	1.93163221425749	0.0408939221730653	1
Merged-chr7-132347813-4	chr7	132347284	132348284	+	902.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30556.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	5.07580947171463	5.06883610325003	5.33918900423545	4.92234442656838	4.97528200968046	5.02247213123641	-0.392919900194686	0.289197715444091	0.686706338298952
Merged-chr4-88438085-4	chr4	88437597	88438597	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025760, intron 1 of 6)	intron (NM_025760, intron 1 of 6)	829.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.53004435590358	6.28291540591858	6.2938837722211	6.81744081835855	6.94301933666872	6.43505906278893	0.611369813759336	0.034322524989107	0.226836342777091
Merged-chr3-89807349-4	chr3	89806834	89807834	+	933.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24036.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	4.06381884309706	3.98708237111026	4.59711449829733	4.01460479995282	4.12603797672179	4.09165006701175	-0.429390130739347	0.40593471795662	0.780439975167702
Merged-chr5-101990493-3	chr5	101989992	101990992	+	757.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	79429.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.56234257970783	4.50420163373295	4.35088808426355	4.54061870823078	4.34251986939388	4.6302624107546	0.0478446251895698	0.912834419067176	0.980471757869349
Merged-chr3-65387089-3	chr3	65386590	65387590	+	824.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026155, intron 3 of 4)	Lx9|LINE|L1	5463.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	3.31712474633967	3.4005829438474	3.78715820907898	3.32405851534379	3.32562009015428	3.46076634852825	-0.527267129228102	0.391911541210573	0.770782330002482
Merged-chr1-167343881-1	chr1	167343381	167344381	+	777.200012	f0_balb.idr	Intergenic	Intergenic	-6110.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	2.36816477537617	2.43601799082586	2.40741070976698	2.14071886702255	2.10431723804659	2.07872537689231	-2.29635603140173	0.0173282803729379	1
Merged-chr11-121734414-4	chr11	121733901	121734901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31974.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.70981308579713	6.77631997141401	6.8511189618514	7.02287944535074	7.36734399365086	6.92417169198567	0.540745636327879	0.0403228479759048	0.250110931380528
Merged-chr10-54040704-7	chr10	54040219	54041219	+	941.214294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	35077.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.96649646569093	4.43374762776984	4.40206115618738	3.77024849788694	3.60999687455764	3.53748335793095	-1.99085181877942	0.000438209532669807	0.00947571174490367
Merged-chr19-56703891-4	chr19	56703390	56704390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18482.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.13357770453088	7.02361385317104	6.86292607319314	6.81794567354748	6.86654872070341	6.21852798312699	-0.515877913853965	0.0835968540537086	0.382673436762277
Merged-chr5-104859809-2	chr5	104859308	104860308	+	968.333374	f0_c57.idr|f1_c57bl6.idr	5' UTR (NM_001039231, exon 1 of 5)	5' UTR (NM_001039231, exon 1 of 5)	219.0	NR_155269	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	4.525816028592	4.71240227184724	4.60858364282283	6.73542105291087	7.04922781558172	6.51032466953874	4.20132782511534	4.51860488718922e-26	8.95200179650573e-23
Merged-chr1-125470966-4	chr1	125470436	125471436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35209.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.60306800529673	6.26249246226621	6.71110188216024	6.8951972650778	6.82409562683966	6.87323596071603	0.523816248898967	0.0543294370038354	0.29933483422739
Merged-chr4-139169084-2	chr4	139168584	139169584	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	11571.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	7.24679699182916	7.12538144086567	7.0357907468084	7.53181609252732	7.72421510338053	7.29714785796736	0.584974896285815	0.0188505382663052	0.155375491635733
Merged-chr11-86959113-1	chr11	86958613	86959613	+	547.0	f1_c57bl6.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	34649.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	3.62832127947834	3.70617731010487	3.461074297189	3.51541945491536	3.56143357881186	3.29504946370019	-0.501681013274073	0.399945913198512	0.776270108360668
Merged-chr5-137502540-4	chr5	137502021	137503021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-92.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	6.90137049661036	6.61858816174842	7.09593071089588	6.87421714407739	6.83459746058536	6.64020323542216	-0.133989675822487	0.624289209831611	0.891935778467452
Merged-chr18-3890073-4	chr18	3889575	3890575	+	768.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1Md_A|LINE|L1	-275757.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	2.09404351617348	2.15148051344831	2.17016982159142	2.31923758327542	2.30408075389658	2.68852583982215	2.15105013376025	0.0205043743220936	1
Merged-chr3-97628735-4	chr3	97628243	97629243	+	987.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161765)	promoter-TSS (NM_001161765)	-61.0	NM_010232	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	4.95330883076579	5.11583370347691	5.40196603791075	5.14009832373112	4.85012760429069	5.03084950384258	-0.320702505114101	0.407842003886028	0.781926100186554
Merged-chr19-4303745-2	chr19	4303245	4304245	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	2477.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	4.81879234874837	4.76073333372689	5.18609756422384	5.36902261008571	5.26859370486315	5.24982270063758	0.791473480032915	0.0354426905553381	0.231103784635105
Merged-chr11-85709408-2	chr11	85708908	85709908	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	10336.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	3.2036435953612	3.14277017121303	3.4197807248059	3.00879364523109	2.76962867475205	2.92515689715264	-1.67196066785819	0.0182417974712124	0.152212543520321
Merged-chr1-45825380-4	chr1	45824873	45825873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	30207.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	5.91786440144144	6.08864308396763	6.0175979982997	6.18041485393528	6.24742196086668	6.24940844424023	0.366994781296747	0.195171375314317	0.582845343184642
Merged-chr11-97127771-2	chr11	97127271	97128271	+	615.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12440.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	5.76000933360061	5.62776303962444	5.38702086775964	5.68980547142642	5.96471834379492	5.54574943984078	0.270139664655822	0.428429285712371	0.795300891260009
Merged-chr6-120083182-4	chr6	120082677	120083677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10203.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.89567413386238	5.90405815443688	5.38011864784781	5.43566094776925	5.22047786233908	4.96681851343191	-1.0100830613656	0.0073308049459836	0.080842370266879
Merged-chr9-108663037-3	chr9	108662530	108663530	+	750.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020520, intron 1 of 8)	intron (NM_020520, intron 1 of 8)	932.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	3.90315507895799	3.91955041570024	3.96719389691044	3.90749026597062	3.84756679669803	4.03540555458133	-0.00709263993500445	0.988701446623948	0.997426973334006
Merged-chr5-43233743-4	chr5	43233238	43234238	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	275.0	NM_001177379	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	8.29841342211246	8.40056502656374	8.42037511513094	8.16045439731922	8.12635406622669	8.33963765414815	-0.231176115998784	0.267809551129188	0.664975925109882
Merged-chr13-45912080-4	chr13	45911572	45912572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	52919.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	5.99674115896277	5.81623588955229	5.93809023124976	5.3161954647851	5.13190253480007	5.48957387683387	-1.15027570427511	0.000502584786801421	0.0105337720252324
Merged-chr19-32215041-4	chr19	32214538	32215538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4025.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.70334786015917	5.62924695939748	5.3252528623592	4.78729878985397	4.38975814004248	4.98408288454833	-1.78521365155505	1.12642101766279e-05	0.000443364427803621
Merged-chr17-44077047-4	chr17	44076573	44077573	+	589.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1729.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	2.21111216097261	2.06931745071755	2.20223373655855	2.48118336188323	2.48051323151126	2.47873383970758	2.356045454717	0.0113955722916274	1
Merged-chr8-45411221-2	chr8	45410721	45411721	+	805.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126166)	promoter-TSS (NM_126166)	-602.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	4.4568368717012	4.69726372775766	4.41252849711937	4.40140399698036	4.96904911558714	5.01820875897503	0.678724787558313	0.137913340525749	0.496333880789271
Merged-chr7-4518706-3	chr7	4518195	4519195	+	560.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009406, intron 7 of 7)	intron (NM_009406, intron 7 of 7)	-2720.0	NM_011618	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	3.84835285600638	3.59760230629393	4.08905097047871	3.81469390303507	3.75297118703764	3.97677046259864	-0.0165673268852315	0.975774380318197	0.994540154302743
Merged-chr19-32789737-4	chr19	32789239	32790239	+	871.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	32162.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.62903408315062	5.67895758159693	5.68522945558914	5.83989278122954	5.93461129895484	5.92189525617568	0.427715371169839	0.157001918953404	0.527852263617716
Merged-chr19-36768294-4	chr19	36767787	36768787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31683.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	4.45502113976504	4.28561652545914	4.33636759210899	4.67507728452294	4.90100632262396	4.58313441652361	0.917967509699201	0.0332815608964345	0.222580335719478
Merged-chr11-98925229-2	chr11	98924729	98925729	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12467.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	2.46179214271282	2.32275149679615	2.63417350280977	2.45180019657761	2.34744925926308	2.4595038222402	-0.345543404008908	0.67281421459349	1
Merged-chr10-117940411-2	chr10	117939894	117940894	+	870.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045342, intron 3 of 3)	B1_Mur3|SINE|Alu	14935.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	6.12591785211396	5.75861852944787	5.32222078109111	6.64001018303157	6.7929113118475	6.07957942646623	1.26501901781254	0.000931829697364554	0.0170333228159732
Merged-chr7-118479327-4	chr7	118478798	118479798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12677.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.33261938283968	7.35150405148302	7.47711085124925	6.97733261446863	7.37300538997186	6.8452081597563	-0.427118727205324	0.108957098945369	0.441063868269437
Merged-chr6-70791412-2	chr6	70790912	70791912	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	763.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	5.51560744188024	5.66962141812164	5.62466378998623	5.6050542356914	5.3288117590353	5.57776123153228	-0.195067620366726	0.555167590077977	0.863184776736198
Merged-chr5-139327296-2	chr5	139326796	139327796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1832.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	6.0042265330593	6.23668551446286	6.44584895680991	6.17625493837955	6.18814004757827	6.16180662071047	-0.0934888880294649	0.750391526336788	0.937550343416037
Merged-chr12-4494363-3	chr12	4493844	4494844	+	714.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17162.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	2.77572493008769	2.96986114539418	3.06495094363022	3.14012468270727	3.03520038432288	3.19378094133498	0.841925097202662	0.218175622562417	0.612414823722149
Merged-chr12-11215718-3	chr12	11215201	11216201	+	782.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6753.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	3.77547075056919	3.91533814195083	3.95079104471856	3.29660351072637	3.15346117429526	3.46192793386997	-2.23696535620874	0.000296181580275971	0.0068936159249239
Merged-chr18-38396951-4	chr18	38396379	38397379	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22028.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	5.91324795001858	5.76863297150051	6.13213730032822	6.04296239535035	6.32930283681949	6.29174952238531	0.502000301556687	0.0974025569147396	0.416135657941618
Merged-chr6-13839982-3	chr6	13839482	13840482	+	721.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330666)	promoter-TSS (NM_001330666)	-40.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	3.41896348496075	3.25667300987512	3.28602773673751	3.03955210001614	3.16230063350405	3.24392324693605	-0.73013884274492	0.250220169200611	0.647478537095548
Merged-chr10-37204575-4	chr10	37204094	37205094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65668.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.82890110505774	6.91249983285352	6.42061476223413	6.1026634412942	6.68108690795359	6.1873505841918	-0.608540660756199	0.0590779042953707	0.314644824497861
Merged-chr1-43735530-4	chr1	43735020	43736020	+	981.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024283, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4918.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	4.0095054834346	4.01347249236235	4.50090655620827	4.32140194558451	4.2813487126657	4.48872567270742	0.484788039169013	0.321306459191106	0.714837665357421
Merged-chr1-178337820-4	chr1	178337344	178338344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-29.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	8.45455686061747	8.74318627860883	8.38057746721233	8.39616942190227	8.59651413991113	8.53097838360979	-0.0398492333312537	0.856946398047566	0.966648789939674
Merged-chr1-149911277-4	chr1	149910774	149911774	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	11165.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	5.4059145106001	5.60662456313045	5.56639121198314	5.41385059671019	5.64610740736794	5.62862617318001	0.0760983128161516	0.817474263973454	0.956767881392089
Merged-chr7-83571287-4	chr7	83570793	83571793	+	905.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13638.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	3.85289472228688	3.73332160859763	3.70336208480646	4.26512265866322	3.99270008686096	4.03663129377139	1.02439299165065	0.0472513095341098	0.275328218747494
Merged-chr10-120210746-2	chr10	120210246	120211246	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026617, intron 1 of 6)	Lx8|LINE|L1	1920.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	2.96128538375464	2.88452635748812	2.91324879421063	2.94383733266457	3.09575138724788	3.16193526114942	0.690883972469442	0.306856951616849	0.703091920100449
Merged-chr1-84363406-4	chr1	84362898	84363898	+	962.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78753.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.42480043910011	4.31528778187509	4.63278636592238	4.11924297810913	4.02242364872483	4.00675574471947	-1.11288761285367	0.018924343339277	0.155705306252602
Merged-chr8-67515982-4	chr8	67515452	67516452	+	840.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11B|LTR|ERVK	-7902.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	2.38477422179329	2.28006518788722	2.19259382444304	2.54458179664251	2.30530690159387	2.66226238649883	1.38066563835233	0.11846210796475	1
Merged-chr8-106959757-4	chr8	106959264	106960264	+	943.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009229, intron 1 of 6)	MTC|LTR|ERVL-MaLR	24014.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	3.77425021082442	3.92984081026151	3.50172060648082	3.77338205962718	3.64221984983138	3.79562063243539	-0.0703075901863992	0.900181411032351	0.976728292075907
Merged-chr1-138145764-4	chr1	138145240	138146240	+	932.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	29386.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.08109192628492	5.04566009789385	4.98223675734562	5.10021241625886	4.92837269553613	5.15007661680957	0.0312590484197595	0.932354825133183	0.985087224393733
Merged-chr1-52226650-2	chr1	52226150	52227150	+	869.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	intron (NM_001081081, intron 1 of 17)	6582.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	3.06916053094268	3.31870926699964	3.63071523089912	3.42195139133269	3.07458804132597	3.88239701575517	0.518071031093716	0.46497929869563	0.816675408672634
Merged-chr1-152019301-4	chr1	152018798	152019798	+	989.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	71022.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.08132491299133	5.28796766940061	4.98259455981342	5.01037033575646	4.95398266655248	4.97454591447907	-0.324963010628698	0.382476644350769	0.764034496138375
Merged-chr9-102622506-5	chr9	102621874	102622874	+	904.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081122, intron 2 of 16)	intron (NM_001081122, intron 2 of 16)	3750.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	4.41215477761509	4.48619200774808	4.52065254427279	4.61460180681909	4.82100487337227	4.81953141103119	0.69115126816362	0.0949124996647782	0.410749429037648
Merged-chr16-91872806-2	chr16	91872306	91873306	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010587, intron 28 of 38)	MER20|DNA|hAT-Charlie	58824.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.48524187441781	3.34348752235825	3.71845511129405	3.30451212119896	3.52018377943728	3.42698225678521	-0.346920656529042	0.565605231681331	0.866847419836075
Merged-chr16-94238797-2	chr16	94238297	94239297	+	833.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	51494.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	3.77960503003921	3.90420432924448	3.47006456919958	3.90519199666377	3.60460292722761	4.01949742099552	0.354245040185321	0.542076030951456	0.857034750433211
Merged-chr1-171193817-2	chr1	171193317	171194317	+	595.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	2451.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	2.69792587382863	2.52990546017309	2.39044680905888	2.59496370739356	2.64673830131291	2.84930218496588	0.828127980784259	0.310129886808418	1
Merged-chr7-121077536-2	chr7	121077036	121078036	+	929.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_021554)	TTS (NM_021554)	-3006.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	3.20341445995281	3.02985557537684	3.44458526823847	3.17385802707388	3.25258682831394	3.30206614576482	0.0558095036834792	0.931069289399028	0.984765710287914
Merged-chr8-126591699-4	chr8	126591205	126592205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	1731.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.25138025457112	8.36422689694345	8.02751485119161	7.92665876313398	8.3793713651216	8.04644505141008	-0.123712842694557	0.610849244436434	0.885849400663435
Merged-chr12-59216393-3	chr12	59215892	59216892	+	938.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	3091.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	7.07030369933942	7.3847208152709	7.35852540133264	7.20093098511053	7.33925844006347	7.3621214273524	0.0374470483118443	0.87783747679172	0.971748379457442
Merged-chr5-115563887-1	chr5	115563387	115564387	+	662.0	f1_c57bl6.idr	TTS (NM_007475)	TTS (NM_007475)	-1376.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	2.77903264405465	3.03754509546204	3.45341351988891	3.25193939422932	2.97599142109309	3.52316435270033	0.604927899445607	0.422114402577654	0.79098189652931
Merged-chr12-110708015-2	chr12	110707515	110708515	+	915.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-11620.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	3.47867287499713	3.06587817526433	3.14637760816463	3.12085839742971	3.42766894387898	3.44725414396708	0.367942946813825	0.581272948356384	0.873263270263929
Merged-chr1-191876725-2	chr1	191876225	191877225	+	746.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-30056.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	6.60306701624741	6.25385545461809	6.1768067954494	6.62515492273034	6.40005345411893	5.89446790671113	-0.0201430276549026	0.951774609929436	0.988956184730673
Merged-chr9-44538051-3	chr9	44537470	44538470	+	629.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11549.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	3.22280323428223	3.13800594848875	3.18478735302131	3.07760789473697	2.94495334593617	3.0817893630449	-0.671430540592246	0.303296763752844	0.699902971652469
Merged-chr13-60717486-2	chr13	60716986	60717986	+	999.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 4 of 26)	intron (NM_134062, intron 4 of 26)	68878.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.11274293100029	2.88266387632088	3.83081762924049	3.1367740004884	3.11523424517078	3.43365039365224	-0.404804417067984	0.591526922547462	0.877670687791177
Merged-chr16-78205454-2	chr16	78204954	78205954	+	652.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50000.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	3.70596587216922	3.6837645177229	3.62561245655454	3.82686601575958	3.78788752649021	3.40421182155162	0.0707605861860514	0.901944024430485	0.977365418427752
Merged-chr16-16555929-1	chr16	16555429	16556429	+	649.666687	f0_balb.idr	intron (NM_001301817, intron 1 of 16)	B1F|SINE|Alu	4290.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	4.88357178710674	5.11190819986145	5.27255345368771	4.77650899069191	5.09423481711892	5.15065164071896	-0.159129220540966	0.684512615314983	0.915930759709583
Merged-chr3-87516860-1	chr3	87516360	87517360	+	578.0	f1_balb.idr	Intergenic	Intergenic	-8718.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	6.24890658928183	6.06480778134332	5.82479610670649	5.13729267405126	5.14075318876781	4.91718894905238	-1.86401894559044	1.2344083511145e-07	8.64584596629082e-06
Merged-chr5-9102659-2	chr5	9102159	9103159	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	1922.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	2.97692142900378	3.20378788282653	3.06104932188755	3.06977701196337	3.08582778372034	3.19090612702662	0.121338202415748	0.853338690539971	0.965672676480491
Merged-chr13-36314453-4	chr13	36313947	36314947	+	930.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	196804.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	4.35481054550893	4.46274927141235	4.70581923555778	4.449002625356	4.51940098650405	4.36513407381461	-0.137781775985962	0.754319015949795	0.938859012739919
Merged-chr2-6642488-3	chr2	6642034	6643034	+	874.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	79128.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.19120732945617	3.22243618069636	3.41064549767357	3.14947783258871	3.37176941704052	3.20293086940983	-0.091182515723744	0.885238883848497	0.973549591486895
Merged-chr12-86883258-9	chr12	86882774	86883774	+	933.648132	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145836, exon 1 of 1)	exon (NM_145836, exon 1 of 1)	1540.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	5.31360577434789	5.34922751754718	5.18024987582014	5.84180061283354	5.50973674584846	5.61694013634019	0.711344993644535	0.0369657421371775	0.237041112187906
Merged-chr9-104235074-2	chr9	104234574	104235574	+	736.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	27856.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.0934703527008	6.17002624163124	5.99221684465128	6.85103331117111	6.77948368473923	6.10363077647258	0.881905446724867	0.006104361256254	0.0706638413203093
Merged-chr1-128103699-3	chr1	128103196	128104196	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357573)	promoter-TSS (NM_001357573)	390.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	7.1989507870927	7.28635821984653	7.11961396751391	7.31817071605507	7.35218364195803	7.50963334395747	0.274431281339633	0.239983608186805	0.636956753865794
Merged-chr11-55204307-4	chr11	55203740	55204740	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153139)	promoter-TSS (NM_153139)	-100.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	6.48110058802861	6.94814491265468	6.55149293832038	6.63831006354586	6.56104129392278	6.04448514076263	-0.368704946814485	0.246249809078032	0.643326659772837
Merged-chr16-38713441-3	chr16	38712895	38713895	+	682.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020260)	promoter-TSS (NM_020260)	-360.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	5.45497246528071	5.01866946548805	5.3695959776122	6.71669147271798	6.76709524217956	6.72250413751127	2.52528324912326	1.39783155863052e-15	4.27613118862236e-13
Merged-chr12-100158339-2	chr12	100157839	100158839	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290303, intron 1 of 13)	MTB|LTR|ERVL-MaLR	1314.0	NM_001290303	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	2.71764652517803	2.85757865703212	2.94040813679066	2.96470166455585	2.60348078035551	2.76968320975581	-0.268952710036834	0.718535088105668	0.927402544945102
Merged-chr5-65863602-4	chr5	65863089	65864089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	20.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	7.71354576407331	7.59838285050109	7.34053917549808	7.28470975988004	7.55992902778828	7.61312818394459	-0.108081992751378	0.662369517420288	0.906777186880082
Merged-chr9-22457643-3	chr9	22457187	22458187	+	788.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018739, intron 2 of 5)	intron (NM_018739, intron 2 of 5)	10669.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	4.88349046952769	5.00824363764644	5.28960088895152	5.50453787783298	5.31121828691622	5.44121211227221	0.729101108637527	0.0448415470457952	0.267036307229204
Merged-chr16-38395623-4	chr16	38395124	38396124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_134102)	TTS (NM_134102)	33434.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	6.46538181060126	5.94976314770271	6.17771191227781	5.98061659649995	5.81064049835926	5.62047843634518	-0.689565926919548	0.0351809300401062	0.230154479658555
Merged-chr6-134156362-4	chr6	134155885	134156885	+	655.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	120685.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.72303014197497	3.27290592624289	3.43001462234611	3.5628603192443	3.2906636780749	3.6622398226572	0.0615338797887726	0.921401867739757	0.982542868764899
Merged-chr13-44407581-3	chr13	44407072	44408072	+	961.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie4a|DNA|hAT-Charlie	-32155.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.01507652492312	3.98821955849537	3.8577211841092	4.24417247112869	4.22515792503778	4.55714361515726	1.07245049479613	0.0291242452755899	0.204936169208565
Merged-chr4-6365939-4	chr4	6365432	6366432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	CpG	252.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	9.23366698055196	9.30960735204806	8.88678452513244	8.92512139210627	9.26433649643315	8.5587993290376	-0.277534903637725	0.289815863973734	0.687502508222654
Merged-chr7-127842510-4	chr7	127842025	127843025	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009294, exon 3 of 11)	exon (NM_009294, exon 3 of 11)	717.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	8.26751998438259	8.31565618063385	8.10555597259703	8.19112940994943	8.74399865278046	7.92322229139903	0.152714961881547	0.581494581391775	0.873299082500526
Merged-chr16-91387367-2	chr16	91386867	91387867	+	694.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 4 of 7)	MTE2b|LTR|ERVL-MaLR	14584.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	5.17243860753977	4.65597060150121	5.26002868031038	4.89659658131898	4.78196814492746	5.07443717135505	-0.287480790508735	0.492145671961652	0.830934592569652
Merged-chr5-113621229-4	chr5	113620712	113621712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	L4_B_Mam|LINE|RTE-X	22391.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.77978573542336	4.59639749154759	4.82199287938835	4.91923269316858	4.41384157493898	4.77569835948729	-0.0445738590323587	0.917689923544969	0.981718564389729
Merged-chr5-96979547-2	chr5	96979047	96980047	+	895.8000490000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18142.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	6.99138682436779	6.82777096680116	6.71716240553559	6.82373615326035	6.96723748889117	7.16210483970356	0.200569819783796	0.439892086581251	0.801456990152239
Merged-chr5-96162240-1	chr5	96161740	96162740	+	1000.0	f0_balb.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-250.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	7.57018177663418	7.48019234045831	7.50021356847624	7.37130463754861	7.00068441001706	7.34968242793336	-0.404349072857221	0.0979597261742104	0.417291460898387
Merged-chr2-93346387-8	chr2	93345785	93346785	+	918.2802119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11798.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	4.75484150069241	4.49251746150117	4.72126717692131	4.69997638781015	4.20136181369124	4.11804743972385	-0.715263133933883	0.136182827428177	0.493146752362964
Merged-chr17-65839759-2	chr17	65839259	65840259	+	774.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 20 of 20)	MTB_Mm|LTR|ERVL-MaLR	45164.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	3.14815681980505	2.98142678406504	3.18831015949624	2.7896896216029	3.06882604233239	3.09015768603246	-0.523180119266206	0.451145535858418	0.808949729821197
Merged-chr4-137610475-4	chr4	137609966	137610966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	16294.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	6.17318325624888	6.22335758196109	6.48865290482987	6.24048383329706	6.31499511772176	6.14478420436323	-0.0857631657884338	0.763869866767247	0.941838906550437
Merged-chr16-75768415-2	chr16	75767915	75768915	+	691.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1597.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	4.70520003267854	4.72432191192878	4.66498545396557	4.61657181645247	4.89693395807479	4.64975698620485	0.0864565169875086	0.832202456673186	0.960612217066934
Merged-chr5-140641622-2	chr5	140641122	140642122	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	7409.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	7.57595696878017	7.79994549803142	7.42083489518389	7.59040920332626	7.69795519110852	7.09667840753436	-0.167900123522804	0.538037361470782	0.854955261281313
Merged-chr13-44538394-4	chr13	44537894	44538894	+	984.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98667.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.53506392311643	3.26064766012276	3.32325064273721	3.51574568874176	3.36735412554827	3.56129807169761	0.370412369846316	0.53807720105368	0.854955846037171
Merged-chr4-149690216-4	chr4	149689731	149690731	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	8477.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.02040759268045	4.95699400882292	4.76686813646401	4.93907799716186	4.73501531488326	4.83313371114609	-0.205421516375058	0.598498380266022	0.880808927175713
Merged-chr11-82764309-4	chr11	82763808	82764808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	13.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	7.72098148443202	7.96078046122279	7.86605021953106	7.87282310473141	7.91968714518431	7.7098440358684	-0.0163319368827405	0.941682726006297	0.987044445549883
Merged-chr6-91718708-1	chr6	91718208	91719208	+	658.0	f0_balb.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	34641.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	3.54835608835629	3.690175634555	3.53715338255951	3.49699188216704	3.45699337519574	3.60774516632253	-0.2867845347455	0.611931569912567	0.886472363634617
Merged-chr1-86217916-1	chr1	86217416	86218416	+	963.0	f0_balb.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	63136.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	4.19255235306058	3.99665892075876	4.01457965268095	3.54558812621134	3.64088006801576	3.43213586702108	-1.72727993285739	0.00243157812299542	0.0359308741712312
Merged-chr1-135688141-4	chr1	135687643	135688643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31920.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.37744653262737	4.94197778823037	4.91033522697131	4.87049882378984	4.58901238493124	4.86279935352347	-0.721840177900936	0.0796480701260625	0.373225016559633
Merged-chr1-91250707-2	chr1	91250207	91251207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355764, exon 1 of 11)	5' UTR (NM_001355764, exon 1 of 11)	141.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	8.98694248408811	9.0396071533063	8.95942839455457	8.93495120368131	9.0281863739421	8.79770543186111	-0.0948556226119428	0.630940591369598	0.894950326243773
Merged-chr9-63712828-4	chr9	63712322	63713322	+	975.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	45172.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.25917676879268	3.24834998338114	3.2238952212652	3.19773469362852	2.95384534513737	3.05868122459461	-0.756999085960772	0.245409086187649	0.642506808909437
Merged-chr6-134921610-4	chr6	134921121	134922121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009875, intron 1 of 2)	intron (NM_009875, intron 1 of 2)	1220.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	7.87030612234544	7.86235515055144	7.89939171465039	7.89031119732599	8.16193263773169	8.00121251904598	0.213171202792146	0.326387199559859	0.718675437322416
Merged-chr1-182955278-3	chr1	182954784	182955784	+	695.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	496.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.56975751242598	3.43290846983752	3.24547545025652	3.1017013976285	3.1034394790644	3.07236893330508	-1.41076783763302	0.0305495359644111	0.211372508608575
Merged-chr6-81958229-3	chr6	81957726	81958726	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177884, exon 17 of 17)	3' UTR (NM_177884, exon 17 of 17)	7723.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	3.63942850714368	3.7074928414636	3.55053315631181	2.80702728079571	2.79889992149411	2.90091619728298	-4.66827787342492	3.36493319532299e-06	0.000156768959303715
Merged-chr10-99444288-2	chr10	99443788	99444788	+	600.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-164883.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	3.17590902804927	3.27429356940402	3.22477050893489	3.02371636650204	2.89056771668597	3.35025617511973	-0.570408698243959	0.39991629822935	0.776248940201881
Merged-chr12-59131826-1	chr12	59131326	59132326	+	1000.0	f0_balb.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	373.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	8.47907686778601	8.566364641552	8.32628707684783	8.56584932885925	8.47578118740004	8.42910006199953	0.038156924328295	0.853513538847551	0.965695174735892
Merged-chr12-59078197-2	chr12	59077697	59078697	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11278.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	4.55497358681795	4.73406308520376	4.95566589538085	4.87126856665638	5.02188382089304	5.15048621534057	0.595495268679429	0.136527175308641	0.493640690178656
Merged-chr17-34123663-4	chr17	34123160	34124160	+	990.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010386, intron 1 of 5)	intron (NM_010386, intron 1 of 5)	828.0	NM_010386	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	6.82962182919934	6.77842900200225	7.24943254681397	7.19532686770726	7.58090648803164	7.31802007626279	0.63079358339211	0.0208983825581627	0.166196958498254
Merged-chr19-34562670-4	chr19	34562159	34563159	+	679.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	11571.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	3.81823010362479	3.87262816304527	3.94181020864148	3.92900164140568	3.78248913091273	4.43418393515547	0.571071691737623	0.29372510463422	0.690424156263798
Merged-chr1-170996995-4	chr1	170996504	170997504	+	986.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20933.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	5.8011511286434	5.83798697513901	5.96628424338231	5.69218457578032	5.89553093753985	5.95904926182277	-0.0231634822395164	0.939589919253383	0.986720663284284
Merged-chr10-96331357-4	chr10	96330870	96331870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105163.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.20339516658165	5.87399119282411	6.32158468760345	5.8031266484253	5.78239608173351	5.97509256354421	-0.502388561829462	0.108416253753043	0.439865944548625
Merged-chr16-32707464-3	chr16	32706933	32707933	+	874.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28453.0	NM_080457	140474.0	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	3.30132119058444	3.21840628992929	3.27256705494099	3.29793129349309	3.41144133332143	3.22754275816738	0.225862612784614	0.712826841867012	0.92531822516521
Merged-chr7-102223071-4	chr7	102222600	102223600	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	72.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	5.87108175584504	5.9398031235264	6.34899888783085	6.37294109609767	6.2787037871846	6.75841695923145	0.697445443577298	0.0287142732513818	0.203135245729856
Merged-chr4-24898055-4	chr4	24897588	24898588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	5.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	5.8284658957846	6.04066331041251	5.59960851815854	5.92152066805291	5.99646900414325	6.00048259205359	0.218603966868653	0.48582720318976	0.827573679263522
Merged-chr6-54180018-4	chr6	54179505	54180505	+	878.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 2 of 12)	intron (NM_001163640, intron 2 of 12)	-84853.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.12296833342043	3.26795914267687	3.16771132020674	2.81959797801154	2.89742068825083	3.23900964822838	-0.891338326511921	0.201876519503253	0.591490595965587
Merged-chr13-89838858-1	chr13	89838358	89839358	+	909.0	f0_balb.idr	Intergenic	Intergenic	-96346.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	3.1538593975656	3.33731905113231	3.58263657646518	3.11862909794652	3.33199301588256	3.55266404750129	-0.0840450861138856	0.896912358899553	0.97587199430405
Merged-chr4-72201051-4	chr4	72200564	72201564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	-171.0	NM_001285530	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	7.56859412342911	7.66365195392083	7.49620348696334	7.35810008013384	7.4665190277049	7.33981997458638	-0.276512447915297	0.220458337610269	0.614989183179403
Merged-chr18-4346456-4	chr18	4345971	4346971	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	6482.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.19245793738044	5.4587379303204	5.28310025139565	5.53279256547853	5.66932820883894	5.28126349862256	0.380875611744742	0.279089843849948	0.67658480298895
Merged-chr12-31951653-2	chr12	31951152	31952152	+	936.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1407.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	6.24164061831232	6.38219130096157	6.45120494701916	6.70888908331464	7.01973673768687	6.77706383970241	0.783855317288687	0.00360161872764752	0.0481496611648609
Merged-chr16-21690573-2	chr16	21690073	21691073	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	4092.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.41884320573677	4.43202225013494	4.52318674150048	4.55057242074219	4.56101054049882	4.81759233439543	0.45566476469642	0.282523870423782	0.680451612659422
Merged-chr12-17690517-4	chr12	17690163	17691163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361645)	promoter-TSS (NM_001361645)	-146.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.05719372804716	6.96585096495003	7.078338235317	7.20158330286676	7.07435235075981	7.30169812503193	0.237898258527181	0.320736294849083	0.714532129212091
Merged-chr11-83593024-4	chr11	83592516	83593516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	71.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	7.46798221846185	7.42077446958035	7.35129176792449	7.57597180007342	7.69392652683731	7.39738874269677	0.222585570705317	0.335783180956305	0.725879995869482
Merged-chr11-85003669-4	chr11	85003159	85004159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	45905.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	4.95754519164604	5.04341524839206	4.94868810940447	4.88116958557641	4.96183354961414	5.14944584056214	0.0190989855481222	0.95936523715442	0.990174309444982
Merged-chr2-31088995-2	chr2	31088495	31089495	+	764.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 4 of 15)	PB1D10|SINE|Alu	7505.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	5.12929227176423	5.15630708489746	5.64831822327554	5.21162496629957	5.1599270146189	5.53250040428834	-0.0363207413896463	0.924642230159456	0.983027504754402
Merged-chr1-134097720-2	chr1	134097220	134098220	+	716.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13522.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	4.98379333485324	4.95231253532716	4.97706485768512	4.78981526749375	4.94942384614839	4.85923406113226	-0.216480002741572	0.566879953371515	0.867634455258659
Merged-chr17-24478876-4	chr17	24478397	24479397	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252463, intron 1 of 8)	CpG	181.0	NM_001252464	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	8.07792809262482	7.86168697628907	7.71863287977117	7.57770506438865	7.59866008544476	7.44132132752774	-0.511693997935595	0.0276630629038017	0.198498459649839
Merged-chr17-65886313-5	chr17	65885764	65886764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009067)	promoter-TSS (NM_009067)	-509.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	6.93436622842281	7.47626434716042	6.97216987142301	6.9957154882764	7.54603008872775	6.9877373029676	0.0827150859333639	0.787734666647587	0.94877064431094
Merged-chr18-79936877-3	chr18	79936377	79937377	+	941.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-110018.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	4.56442570639999	4.50388599648003	4.62832686351255	3.60970174539843	3.28260196025102	3.80519700457988	-3.41763187658607	3.79045306700951e-08	3.01814372057156e-06
Merged-chr8-110845970-2	chr8	110845470	110846470	+	578.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	-630.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	5.44808483052634	5.65962991478526	5.26298199011501	5.59162666717775	5.61341062636086	5.36129394452761	0.10738174609924	0.756138648625978	0.939527320894303
Merged-chr10-24930365-4	chr10	24929880	24930880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2910.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	5.52541400834853	5.22763771769427	5.43883958531846	5.64006847473456	5.81643153700092	5.472131257961	0.492286858985069	0.148812909794267	0.51474266265846
Merged-chr13-49184574-2	chr13	49184074	49185074	+	824.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2973.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	3.86796266195543	4.1496397169273	4.48749987153671	3.89054365729074	3.96881954057995	4.43949037080754	-0.197150165714157	0.717552649825333	0.927113669510706
Merged-chr8-75072854-2	chr8	75072354	75073354	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20764.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	2.88113132863762	2.83335690063473	3.26895258301581	2.71431810764183	2.80441446842568	2.83676863353343	-1.05997798149164	0.151628886599338	0.519079091424247
Merged-chr16-91044547-4	chr16	91044034	91045034	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026110)	promoter-TSS (NM_026110)	-155.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	7.6490565503938	7.54039194061375	7.22688041042566	7.7442728618713	7.55008915320551	7.47836200716948	0.152975395167633	0.535877767109816	0.853668337370661
Merged-chr17-78797363-4	chr17	78796831	78797831	+	861.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081179, intron 21 of 35)	intron (NM_001081179, intron 21 of 35)	38050.0	NM_001081179	320473.0	Mm.46309	NM_028084	ENSMUSG00000039414	Heatr5b	2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414	HEAT repeat containing 5B	protein-coding	3.26288513298671	3.52841943463896	3.26159032631961	3.11794395929599	3.25948715982857	3.21637043929475	-0.65254337363694	0.304296098291699	0.70084663420418
Merged-chr5-88595043-2	chr5	88594543	88595543	+	764.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	11530.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	6.92241515981728	7.04319731231675	6.87790706913538	6.94308336663349	7.10641057249064	6.95056999539476	0.0817012220590471	0.738745385055891	0.934087954164916
Merged-chr4-141130218-2	chr4	141129718	141130718	+	776.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277195, intron 1 of 3)	(TTTA)n|Simple_repeat|Simple_repeat	9578.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	3.13862506533219	3.21396967687948	3.34537223754264	3.07500480565688	2.72264587641705	3.14101747745944	-1.11185729226983	0.120436199389793	0.464050035016398
Merged-chr16-8665515-2	chr16	8665015	8666015	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	6638.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	3.18463173851147	3.39903650798085	3.63497131068732	3.2194110960789	3.10165992507816	3.23148425272905	-0.933911029003195	0.146689034209128	0.510979493291873
Merged-chr3-8768313-2	chr3	8767813	8768813	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101275.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.33951430064259	4.19503400134797	3.93171922746566	3.45183232373322	3.38604103168533	3.56464450117698	-2.4656514148129	2.36525663293228e-05	0.000842861986779569
Merged-chr8-81012329-2	chr8	81011829	81012829	+	679.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027554, intron 1 of 9)	intron (NM_027554, intron 1 of 9)	2577.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.81842494723055	3.49427402441767	3.36483225335876	3.86984433202372	3.84558418540329	3.98249834211109	1.03839614908721	0.0760806578645891	0.363110266412448
Merged-chr2-46366044-4	chr2	46365539	46366539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	669434.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.79450495475725	6.63710400059926	6.62810756014068	6.79678769358826	6.57736963545429	6.68703845792679	-0.00716166372750025	0.97795839129637	0.994994154947079
Merged-chr11-87448286-4	chr11	87447806	87448806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 2 of 30)	CpG	20715.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	7.0038578302869	6.92754549384836	6.16467326503377	6.51094342418749	6.91135790599999	5.85189259718175	-0.401467673200654	0.5367885689654	0.854215768737235
Merged-chr11-53300572-4	chr11	53300086	53301086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-107.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	8.90416809495855	9.14867078176885	8.73228094551092	8.6677375659589	8.98486383760983	8.7965531157353	-0.162248029534505	0.473404352984146	0.82090428702971
Merged-chr19-40640048-4	chr19	40639558	40640558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19712.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.61232421927831	6.52719531157049	6.40108661622135	6.10436546019742	5.92570285427983	6.22623493304175	-0.733086215120067	0.00937505909187404	0.0961869304018231
Merged-chr13-101805854-4	chr13	101805349	101806349	+	911.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37632.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.25056657088991	2.95651163549345	3.29189337263211	3.95045174624885	3.47024608721516	3.42636883468863	1.81866241932125	0.0068524726914978	0.076926679400182
Merged-chr9-118625786-2	chr9	118625286	118626286	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	19077.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.09769669457144	3.97436390913619	4.43985720652561	3.96425118375124	4.09531373906834	4.17346018958716	-0.272575180815248	0.58577155651447	0.875131338300747
Merged-chr4-125113987-2	chr4	125113487	125114487	+	593.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290701)	TTS (NM_001290701)	13894.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.01003260396642	3.77008478326669	4.25283245159028	4.56589966659113	4.58852419496558	4.45191993896548	1.43859011743805	0.00292778256970541	0.0413748186243287
Merged-chr11-52097202-4	chr11	52096701	52097701	+	951.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	4.87074984730869	4.90127945467526	4.903379811925	4.57731966533122	4.6922642243807	4.82270314979265	-0.446295050723857	0.256725126289066	0.653799293247043
Merged-chr12-87408085-4	chr12	87407575	87408575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19720.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	7.19959813613018	7.28770038902409	7.47101005894571	7.4226469117738	7.65715059443639	7.23060303105398	0.205122988578622	0.414099128591204	0.785615201854629
Merged-chr18-80483733-4	chr18	80483240	80484240	+	984.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14073.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.34049339213934	5.79953921080462	5.79988623051936	5.5550076588212	5.34172933809256	5.52287202371656	-0.35620208538132	0.309162088239834	0.704802606494279
Merged-chr12-77238804-4	chr12	77238331	77239331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045554)	promoter-TSS (NR_045554)	92.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	7.04852042140393	7.2002893354901	7.04671544507006	7.05563756598841	6.65390323268344	6.94268506608954	-0.326878801075847	0.208458754994236	0.599337828187015
Merged-chr2-27676927-4	chr2	27676423	27677423	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-278.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.60453271843006	5.57830926420857	5.42550356997154	5.54951480536928	5.30983453105014	5.15704820490364	-0.364581865965711	0.291372925029806	0.689051679650718
Merged-chr7-28803454-3	chr7	28802938	28803938	+	858.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7452.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	4.0542403037493	3.88478292511222	4.2596976770325	3.98003681706178	4.22057013680958	4.15052793769279	0.165484729444103	0.739078627994605	0.934159689508642
Merged-chr8-71613644-4	chr8	71613154	71614154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	2630.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	7.48867315764206	7.36777796032433	7.14151624400937	7.49601964378479	7.88695672984904	7.22504872065193	0.33779497521726	0.224148935841984	0.618975994077385
Merged-chr4-126261603-2	chr4	126261103	126262103	+	999.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-802.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	7.2207559481061	7.34235983464205	7.1046283339519	7.27467703061485	7.20253475722605	6.97138919989535	-0.103502350246718	0.673873781295938	0.911675494180418
Merged-chr10-59310318-3	chr10	59309804	59310804	+	892.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12992.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.66012003912411	5.68167978399572	5.51789579196123	5.48009196529128	5.35309204908945	5.66306986576876	-0.253136794388344	0.442484645957501	0.803210868548523
Merged-chr6-35134722-3	chr6	35134190	35135190	+	863.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-953.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	4.47763040887672	4.61158701173469	4.40885759887096	4.37757066475799	4.56433794807108	4.60260584922765	0.0243133746741288	0.954954379475225	0.989683851514547
Merged-chr1-165682642-4	chr1	165682151	165683151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25443.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.20447410540262	7.28840360620944	7.16626607289531	7.06449751553875	7.42867913599423	7.37283730371097	0.115160532985448	0.639740921769602	0.898199312621371
Merged-chr6-89448996-4	chr6	89448502	89449502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-86389.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.06398092278132	3.94153567079346	3.70370762282612	3.94263475086014	3.72280401120334	4.21411289511741	0.146414819630193	0.788588764213816	0.94895503373255
Merged-chr1-16689572-4	chr1	16689032	16690032	+	878.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159711, intron 1 of 4)	B1F|SINE|Alu	1076.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	6.43550239689138	6.41820062848845	6.51750097729354	6.62843339695954	6.79866996214118	6.43017382197421	0.296105656570787	0.274339051576065	0.671721462492876
Merged-chr9-77920343-1	chr9	77919843	77920843	+	885.0	f1_c57bl6.idr	intron (NM_134255, intron 1 of 7)	ID_B1|SINE|B4	2978.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	2.98760143314131	2.93922956450398	2.8450605608139	2.98266846802923	3.06839367995175	3.09962677664524	0.568777756634143	0.401467184211647	0.777568046382993
Merged-chr3-58468762-2	chr3	58468262	58469262	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54042.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	3.72581895015688	3.37950615504049	3.59343532516532	3.41570942584187	3.47979699637379	3.76375092895634	-0.066305025630298	0.910844007396171	0.979969158480567
Merged-chr13-23438100-4	chr13	23437561	23438561	+	989.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7044.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	4.92358194966446	5.16330338688069	4.95337134085065	5.07487442653218	5.38572563331733	5.25899745743338	0.471564975592194	0.205061621748008	0.595694220420628
Merged-chr9-13467184-2	chr9	13466693	13467693	+	750.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	35832.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	5.8163972038343	6.10020447213268	5.86759942164649	5.76082168635301	6.02218847391249	5.8025876054661	-0.111616547680897	0.721220885934197	0.928451291671431
Merged-chr14-118090121-3	chr14	118089619	118090619	+	927.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37873.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	5.13128182693668	5.29804482394768	5.29490070404113	4.82635603071117	5.32327376546853	4.65526613552062	-0.527695728908449	0.210775431965167	0.603098348627511
Merged-chr7-80206179-2	chr7	80205679	80206679	+	735.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	7738.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.0020844710128	4.02861111050618	3.99820634150659	4.18239179227357	3.87585961991525	3.75434843542521	-0.167989544615849	0.745064446595266	0.936032341688524
Merged-chr15-81077759-4	chr15	81077274	81078274	+	899.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	B3A|SINE|B2	27273.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.34399340744028	3.31265765916738	3.47944477006975	3.3420202776122	3.45379912021171	3.14737037246277	-0.187246822196685	0.763654566454916	0.941793063578371
Merged-chr3-109452604-2	chr3	109452104	109453104	+	588.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	111921.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.60975617411956	4.30051629615803	4.29170576164531	4.04837476743841	3.76478047545326	4.17729678208038	-1.17175839118212	0.01944371541928	0.158413068893317
Merged-chr15-95833663-2	chr15	95833163	95834163	+	587.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-3591.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	2.28657658161596	2.25357754114255	2.339655620336	2.34490238967002	2.21507049788935	2.47739687388378	0.350987312997844	0.676271419375186	1
Merged-chr6-86480549-6	chr6	86480069	86481069	+	978.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131125, intron 1 of 4)	intron (NR_131125, intron 1 of 4)	261.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	6.8269990861923	6.72140518890358	6.74414960095709	6.87453420696285	6.92608982296621	6.58542365675249	0.0753321948793388	0.771895848672953	0.943666769877029
Merged-chr12-36039598-4	chr12	36039103	36040103	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	2875.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	7.4252643598885	7.66049997378287	7.15872479262545	6.77588805471214	6.78669722233369	6.3757030714317	-1.1623208880775	3.91273570720618e-05	0.0012881122059341
Merged-chr2-165884757-4	chr2	165884256	165885256	+	981.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	82.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.53715542829746	7.62260916844722	7.76527533210327	7.88072533819672	8.16068001763297	7.8630749171635	0.48858991107894	0.0340219590282366	0.225642520434378
Merged-chr16-38198396-4	chr16	38197903	38198903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347232, intron 7 of 11)	MTC|LTR|ERVL-MaLR	96421.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	5.06054388461604	4.59393797112791	4.80680029091113	4.64705508937751	4.79695363234466	4.97970209191207	-0.06123011334381	0.8838914504808	0.973466734537782
Merged-chr4-55349830-4	chr4	55349334	55350334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009011)	promoter-TSS (NM_009011)	-208.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	7.82783613879334	7.94874156026957	7.46966635496275	7.76281608862061	7.61060416805842	7.617789854592	-0.154939135273381	0.52428113783895	0.848650426908011
Merged-chr6-88905747-2	chr6	88905247	88906247	+	599.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011906, intron 1 of 11)	L2a|LINE|L2	3496.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	4.9574558611509	5.20220742470771	4.74449674555803	4.77169281606329	4.67217919756674	4.68747964866998	-0.633452965844101	0.117699284395995	0.458026473483394
Merged-chr11-26586756-4	chr11	26586245	26587245	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7175.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	7.02140517080211	7.21240189376114	7.18466431568095	7.30759309479241	7.38089057285307	7.11728919064052	0.208588959802441	0.387854211709997	0.767809603349006
Merged-chr17-25727578-4	chr17	25727104	25728104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	-113.0	NM_028009	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	4.75500736410122	4.68848183690435	4.58325565281579	4.63339926460064	4.64019730547725	4.56564690248065	-0.157514534931199	0.699291855222646	0.920558737649758
Merged-chr11-4160314-4	chr11	4159843	4160843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164620)	promoter-TSS (NM_001164620)	-11.0	NM_026175	67465.0	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	6.00288905502245	6.24145582892971	6.1713277245205	6.19517740133771	5.86689405038873	6.25156951505537	-0.0630366912943462	0.83546211008778	0.96170894730835
Merged-chr6-134567048-6	chr6	134566545	134567545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008514)	promoter-TSS (NM_008514)	-132.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	7.51741134619993	6.82870002965682	7.07324846453825	7.75625971514275	6.85651338034584	6.99433869764957	0.14321581146977	0.681163892025759	0.914599647187446
Merged-chr16-18406085-3	chr16	18405581	18406581	+	779.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_007744)	TTS (NM_007744)	7413.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	3.57540855966634	3.68029338133351	3.97547555186604	3.89420045772218	3.78983991978571	3.95063173909122	0.421909481211778	0.433983070736104	0.79814689082248
Merged-chr14-50838659-3	chr14	50838147	50839147	+	996.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 34 of 54)	intron (NM_009351, intron 34 of 54)	30731.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	6.78263315371454	7.03767495151103	6.8181436117417	7.1673710494342	7.46892510406321	7.30727370734566	0.656961826920107	0.00934139874129487	0.0959840832879308
Merged-chr17-5597218-2	chr17	5596718	5597718	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104618.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	4.94608555606639	5.20981074610915	5.29685577522353	4.43773323486937	4.67186548946204	4.50139916459587	-1.36516084112931	0.00104539709263375	0.018634404730906
Merged-chr12-81782147-2	chr12	81781647	81782647	+	621.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-977.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	4.55484901886439	4.99940883967001	4.98781722209091	4.73964470880042	5.04133450993264	4.94781720552196	0.129637384272508	0.754658880968326	0.939026725600222
Merged-chr8-56326284-2	chr8	56325784	56326784	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31732.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	3.06171233940316	3.2238515089368	3.25019132240791	3.23630420029084	3.41217884530717	3.37727995441698	0.681663564235277	0.275428320461484	0.672925967905546
Merged-chr1-191277850-4	chr1	191277296	191278296	+	996.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40322.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	4.07268351527417	3.71829443130383	3.61420307580532	3.60876789835881	3.47926216838439	3.45424090749844	-1.0529756141334	0.0708065847063155	0.34888764076429
Merged-chr6-125334584-4	chr6	125334083	125335083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011324, intron 3 of 11)	L1MB7|LINE|L1	13243.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	6.40906534363355	6.18071178679443	6.10708229606298	6.51320215975316	6.78725605165653	6.54737938450399	0.621340418590673	0.0280747011682489	0.2003292800624
Merged-chr9-16312245-4	chr9	16311772	16312772	+	856.44165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65959.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	5.56111590383056	5.80634546493433	5.75585184614823	5.20172619387199	5.47616074942281	5.30849409747219	-0.700094430688736	0.0392914080666119	0.24603849205348
Merged-chr6-83268380-4	chr6	83267877	83268877	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001166067, exon 10 of 25)	exon (NM_001166067, exon 10 of 25)	31002.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	4.32953619069201	4.06212321306937	4.03896553335703	3.74322612897017	3.86889336732401	3.7447307575926	-1.10107885602667	0.0343019354808055	0.2267393904899
Merged-chr19-5528590-2	chr19	5528090	5529090	+	954.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18073.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	3.97838474738857	3.77578778783779	3.78231698521473	3.77868672396688	3.62611603401611	3.52083196177003	-0.668658981041499	0.2234010584824	0.618087468987021
Merged-chr6-43623636-3	chr6	43623135	43624135	+	955.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	Lx7|LINE|L1	42643.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	3.73838933388569	3.79419193976214	3.4941044661882	3.56312854667333	3.51880632596424	3.77996950437003	-0.241735458665367	0.670163507254201	0.909925511342583
Merged-chr10-40448187-3	chr10	40447684	40448684	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	98876.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	3.73317394062053	3.90337896809758	3.93007467953462	3.71079619366807	3.46468476661435	3.7537688469625	-0.718270981487476	0.191008770215901	0.577558823376959
Merged-chr15-64059899-4	chr15	64059395	64060395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360038)	promoter-TSS (NM_001360038)	-131.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.33725630180886	8.40175882594349	8.51309130778428	8.31615741360067	8.49665353461663	8.41112091110142	-0.00722606867085858	0.972035872570582	0.993868590220018
Merged-chr1-37474250-4	chr1	37473735	37474735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	14370.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	8.0572111374229	8.20100145110104	7.96594524369231	8.18194204970206	8.53734350916814	8.16686904920097	0.325473936385473	0.160002370305547	0.532560391551019
Merged-chr12-51348223-4	chr12	51347711	51348711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167963)	promoter-TSS (NM_001167963)	-19.0	NM_001167964	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	6.37676575515132	6.22054580242284	6.56884661872404	6.51683309866154	6.41959998115272	6.17258765437635	-0.00480113352644157	0.986702962568275	0.997073310870088
Merged-chr5-31253737-2	chr5	31253237	31254237	+	666.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027221)	TTS (NM_027221)	2031.0	NM_027221	69815.0	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	2.75726300547989	2.61886251298562	3.0174459438725	2.72092732350793	2.71656289316132	2.80337465503123	-0.293050887660607	0.69462717464837	0.919217788511748
Merged-chr14-75283842-2	chr14	75283342	75284342	+	983.666626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-524.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	5.69728587518223	6.34881552723757	6.27018675085369	6.02569780196683	6.04571077418436	5.84372363954526	-0.267529214878518	0.426337831408493	0.793775990271191
Merged-chr13-23571272-4	chr13	23570770	23571770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	-50.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	7.56576188952967	7.64340093421275	7.66622762955857	7.05187101969222	7.44867011836809	7.45832968225078	-0.426478748680323	0.0818873620148153	0.378577494186969
Merged-chr6-34864382-4	chr6	34863838	34864838	+	824.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	1192.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	6.53732322284665	6.91871384297505	6.50683606875542	6.85762647099796	7.27783667941519	6.5852327054686	0.428617239111569	0.16836089896813	0.544889256856239
Merged-chr19-18631895-4	chr19	18631414	18632414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	-101.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	7.5996435805159	7.85618043389918	7.7999468547424	7.30775224050254	7.60988174795998	7.77463579931414	-0.26124258944996	0.290425052698662	0.688207846988308
Merged-chr8-126474901-6	chr8	126474366	126475366	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159907, exon 1 of 30)	exon (NM_001159907, exon 1 of 30)	199.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	5.2163638298592	5.09222618672688	5.40590538150482	5.05399728813437	4.65091552676987	5.10548252624099	-0.627995384568026	0.111256897283369	0.445541626198602
Merged-chr8-124020918-2	chr8	124020418	124021418	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357315, exon 1 of 5)	5' UTR (NM_001357315, exon 1 of 5)	138.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	7.08856910586998	7.17212853114451	6.96848136566524	7.33303371875511	6.95158614006891	6.8810682461272	-0.0135811827583985	0.958909740013157	0.990174309444982
Merged-chr12-34789227-4	chr12	34788734	34789734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	MLT1F|LTR|ERVL-MaLR	127861.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.88785201908782	5.98014414694659	6.15248452927846	5.81907080250541	6.03329548392097	6.06573284941301	-0.0476279167645172	0.874236623318251	0.970702584142637
Merged-chr19-55818143-4	chr19	55817650	55818650	+	894.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	76340.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.36955215268573	4.15062079767031	4.22596706613837	4.09968323189422	4.10504472842239	4.05674842513948	-0.459468947636006	0.330060376562165	0.72168345323833
Merged-chr3-58690739-4	chr3	58690237	58691237	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009174, intron 1 of 1)	intron (NM_009174, intron 1 of 1)	1651.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	7.19593977309495	7.36467937373043	6.82306089827432	7.19312148391598	7.21222912238753	6.86607137650277	-0.0757940448967414	0.783679515217983	0.947273157369161
Merged-chr6-51524497-5	chr6	51524054	51525054	+	859.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	294.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	7.38040624957409	7.6332032292358	7.43504807052375	7.26692553325031	7.49363484735626	7.305863600006	-0.185068349457822	0.437670119402611	0.800124251241402
Merged-chr4-132618025-4	chr4	132617522	132618522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21024.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.69513393917673	6.42890060172886	6.37054255753636	6.41619411815976	6.65159936712115	6.39144516081159	-0.0191620921098766	0.945677717288182	0.98796006280508
Merged-chr10-127597965-2	chr10	127597504	127598504	+	878.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23144.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.90166419726513	7.61995203431691	8.07622009071935	7.60920092820223	7.94831143384647	7.95638109047868	-0.0383319384294441	0.878283608591863	0.971842464414451
Merged-chr12-86888241-4	chr12	86887732	86888732	+	997.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3418.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.78212441885706	7.84333379619011	8.10140910462367	8.0652500845386	8.67170657585123	8.19085494860269	0.60780927995747	0.0198058364879705	0.160342872396482
Merged-chr5-21367671-4	chr5	21367168	21368168	+	927.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5005.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	5.00592483346075	4.99369828114117	5.18966019608739	5.85202260080657	5.93515517054605	5.5681165355797	1.44958858300809	2.34183483635536e-05	0.000834873149372138
Merged-chr10-80098404-2	chr10	80097904	80098904	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359637, intron 1 of 3)	RMER4A|LTR|ERVK	2783.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	4.21539647908331	4.18189738901964	4.28940583571492	4.77329784132927	4.6558248598244	4.26313157434709	0.935286686331686	0.041337722901217	0.254034656363697
Merged-chr13-81231118-2	chr13	81230618	81231618	+	950.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	Lx2B2|LINE|L1	267044.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.59510875911388	4.88775146839222	4.74082027020296	4.39505818179831	4.52452846832563	4.73061086606483	-0.472976331754678	0.265286517210695	0.663013396735394
Merged-chr4-150567882-2	chr4	150567382	150568382	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	84292.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.41380077623983	4.51159404982829	4.89053740007848	4.77103639303932	4.80295831105255	4.57553178471654	0.278565834395768	0.519455935441221	0.84582839931823
Merged-chr17-88439772-3	chr17	88439259	88440259	+	754.633362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-945.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.14306244301474	4.32315623326277	4.35953002280313	3.99889216984292	4.05163144489489	4.54368352167725	-0.179341988388843	0.718626043825127	0.927412960109508
Merged-chr14-19974627-2	chr14	19974127	19975127	+	805.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	2066.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	6.07752412992411	5.87325423352053	5.67656224909128	5.80812538812255	5.35001375219081	5.47558463074054	-0.612270156721587	0.0747613024079062	0.359954776690028
Merged-chr11-117283525-2	chr11	117283025	117284025	+	598.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113487, intron 1 of 10)	intron (NM_001113487, intron 1 of 10)	17279.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	2.56827123506243	2.71801387614841	2.70195664951369	2.68025912999825	2.49165098058281	2.83516384936423	0.0374432625349543	0.961180986779058	1
Merged-chr9-116087422-2	chr9	116086901	116087901	+	654.25	f0_balb.idr|f1_c57bl6.idr	TTS (NM_009371)	TTS (NM_009371)	87962.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.46422809628609	3.93134886213817	4.06307532705494	4.28010926083415	4.36163922984279	4.13347173194145	0.235985115940851	0.640520301151076	0.898483031109382
Merged-chr10-21556557-3	chr10	21556059	21557059	+	835.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36586.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	2.98257094898713	3.00417262553285	3.10727069680156	3.27563122582856	3.21734132815664	3.34882048234861	1.0907240807727	0.0898517819231933	0.398367649232111
Merged-chr9-64016697-4	chr9	64016199	64017199	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	5360.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	4.55918900191318	4.26130509537753	4.21017016230428	4.60328859489353	4.43053180621944	4.46403541508512	0.356706826261712	0.430257545798549	0.796158825510326
Merged-chr4-42968884-3	chr4	42968374	42969374	+	923.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1072.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	2.79475372792644	2.88944303409174	2.98395441903084	3.89472466157329	3.40388352162268	3.59628332926586	3.66970479046425	5.36144873918702e-06	0.0002352929465666
Merged-chr15-94680854-4	chr15	94680346	94681346	+	955.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	RMER1A|Other|Other	51661.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	4.62840177616152	4.82496058512407	4.54313160438544	5.36706168766137	5.49994431050592	5.3290206750183	1.53712650593898	6.52273676520202e-05	0.00197615499987246
Merged-chr14-31251375-4	chr14	31250836	31251836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	-21.0	NR_153760	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	8.432355899183	8.46411805443402	8.08702308464502	8.31939125434635	8.44863449161708	8.25887191905219	0.00349549959627863	0.987582882676793	0.997223245230291
Merged-chr15-12027979-4	chr15	12027487	12028487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31980.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	2.55200985486975	2.47988607536996	2.44454646663778	2.51044696965301	2.40627768278832	2.70484518936806	0.27568526950938	0.730012004712795	1
Merged-chr4-132778369-2	chr4	132777869	132778869	+	857.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011284, exon 9 of 9)	3' UTR (NM_011284, exon 9 of 9)	10009.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	5.10395965892095	5.02595148173981	5.25142210116226	4.94582806702421	5.03368845724357	5.02035537156153	-0.257908355426497	0.481906868786115	0.82522727772513
Merged-chr8-71279758-2	chr8	71279258	71280258	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 1 of 39)	PB1D10|SINE|Alu	7044.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	3.42605178913088	3.57898698383813	3.66430661131083	3.55731330701594	3.71310414301161	3.57628134822206	0.233345594907573	0.679252855687485	0.913693374830142
Merged-chr9-60187153-3	chr9	60186635	60187635	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-45915.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	4.41122885741746	4.63394367432295	4.3341804012489	4.3079981297185	4.51283173000659	4.16089360839248	-0.320534291938484	0.489727182290132	0.829882480355779
Merged-chr19-8921209-3	chr19	8920731	8921731	+	877.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024256, intron 1 of 4)	intron (NM_024256, intron 1 of 4)	838.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	6.83749975965234	6.79081028257445	6.67304873305049	6.78667017144252	6.68777646869976	6.7793423144928	-0.0388294016826928	0.876855442057997	0.971407825796496
Merged-chr14-49022346-4	chr14	49021880	49022880	+	655.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207214, intron 13 of 17)	L2a|LINE|L2	-44169.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	3.68066891214322	3.36425682236392	3.40593254489425	3.66153325431671	3.60325318637259	3.47866644149171	0.323799216006459	0.581966400647889	0.873484978987509
Merged-chr17-47600151-4	chr17	47599640	47600640	+	810.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081636)	TTS (NM_001081636)	6673.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.54753489858239	4.62397730542631	4.81300546907937	4.74612247596082	4.72581907439661	4.7668056627921	0.205194261698235	0.611220097347615	0.885988569588703
Merged-chr2-84827674-2	chr2	84827164	84828164	+	943.833374	f1_balb.idr|f1_c57bl6.idr	exon (NM_013899, exon 2 of 3)	exon (NM_013899, exon 2 of 3)	643.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	4.13233823057297	4.28074890322378	3.96863819626054	4.26747497358058	4.22017389461005	3.98700470336048	0.0803337640159448	0.869956350832552	0.96995859587526
Merged-chr7-67246897-3	chr7	67246366	67247366	+	779.766663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357324, intron 8 of 11)	L1MCa|LINE|L1	24250.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	4.31416106109492	4.64123051110109	4.64541597736871	4.66933308267517	4.42602378860441	4.99180440969278	0.393744165587857	0.386571228151094	0.767131316757601
Merged-chr3-116893112-4	chr3	116892611	116893611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009146, intron 9 of 16)	MTD|LTR|ERVL-MaLR	31431.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	4.1110619790672	3.96206263650604	4.37776936845492	4.60475304211778	4.21261885681233	4.31541809181456	0.635629552938525	0.191763207043651	0.578581026812988
Merged-chr6-129421448-4	chr6	129420963	129421963	+	979.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205363, intron 6 of 6)	MTC|LTR|ERVL-MaLR	12601.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	5.59882298750881	5.50127994492857	5.40141954483746	5.2827873079076	5.24841712096415	5.65872038308208	-0.214807314133124	0.538046008280405	0.854955261281313
Merged-chr5-138194423-4	chr5	138193986	138194986	+	997.9500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178612)	TTS (NM_178612)	172.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	7.82711264064493	8.04690174274316	8.00558866911809	7.91168944592368	8.14722000748261	7.79249641601955	0.00528757529545379	0.981700450351184	0.995815982331978
Merged-chr12-83988435-2	chr12	83987935	83988935	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134188, exon 1 of 3)	exon (NM_134188, exon 1 of 3)	574.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	8.52228733757526	8.80623395063701	7.99627753634361	8.1032179250709	8.0687794279286	7.76260686645104	-0.701639232062328	0.0115213965556728	0.11115041908457
Merged-chr7-143043126-4	chr7	143042619	143043619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-9631.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	6.24590185701283	6.20999887585242	6.2473065695884	6.30855589764918	6.25563723652216	6.22554668597638	0.0521854331370777	0.848113054681187	0.964318271116593
Merged-chr15-85383595-4	chr15	85383066	85384066	+	771.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016843, intron 6 of 11)	intron (NM_016843, intron 6 of 11)	47185.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	5.12429300139456	5.38404660263775	5.54135290644222	4.85463604430976	5.07346143755754	5.20123316681666	-0.62829617330072	0.0958264110680542	0.412686921595707
Merged-chr16-43363104-4	chr16	43362597	43363597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181058, intron 2 of 6)	LFSINE_Vert|SINE|tRNA	57099.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	6.50319563927276	6.2513307765737	6.31186691334611	6.36822341237131	6.60893058285791	6.35212315289495	0.154529385295444	0.582069413665361	0.873508337816738
Merged-chr7-84152158-4	chr7	84151647	84152647	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133722)	promoter-TSS (NM_133722)	-254.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.26749702398143	4.0918049764865	4.24783880340205	4.9287726842914	4.22366918664352	4.69652836306754	1.12207996932521	0.0217887537296113	0.170940846721997
Merged-chr19-6067956-4	chr19	6067455	6068455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028454)	promoter-TSS (NM_028454)	-105.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	5.19989309658788	5.07709195317058	5.70346153486245	5.10335102993331	5.30929539619664	5.54120918309928	-0.036127678505035	0.92680282994613	0.983578869536024
Merged-chr5-35726033-2	chr5	35725533	35726533	+	669.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	3243.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	3.1160393107134	3.31199257827599	3.29272213896512	3.18081607783639	3.19114366688047	3.36348265458694	0.00419670304294248	0.994660573379729	0.998961028701257
Merged-chr2-155751502-4	chr2	155750914	155751914	+	927.216675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011171, exon 1 of 4)	exon (NM_011171, exon 1 of 4)	197.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	5.12873406966478	4.80869461805868	5.07147324171837	5.47003657140237	5.45053709872879	5.30334737361301	0.83147117986565	0.0216375767468308	0.17021375617691
Merged-chr11-106127150-2	chr11	106126650	106127650	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 6 of 15)	B2_Mm1a|SINE|B2	32777.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	2.97657337501424	3.08741970410267	3.27479994567419	3.27197313606178	2.99795107221031	3.29120308974667	0.323638355964496	0.625950565693055	0.892768520930812
Merged-chr7-97764767-3	chr7	97764272	97765272	+	617.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23769.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.47746399482554	5.59514099599934	5.27606650712365	5.29712595236535	5.31979628045351	5.37210100015463	-0.26984266853435	0.429082852720976	0.795570481157701
Merged-chr17-34264166-4	chr17	34263683	34264683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207105, intron 1 of 5)	intron (NM_207105, intron 1 of 5)	956.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	6.61093320507057	6.22256762933505	5.86910812766796	6.74480098967246	6.93416580929748	6.87054975626256	0.903362505499276	0.00421911573979669	0.0541348006903628
Merged-chr5-138116966-4	chr5	138116468	138117468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011757)	promoter-TSS (NM_011757)	63.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	6.63099271954836	7.17754758168799	6.84918253807047	6.78921828019026	6.90899234197197	7.03158824239634	-0.000274038465433896	0.999218482540119	0.999910586345539
Merged-chr11-107509765-2	chr11	107509265	107510265	+	889.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30237.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	2.65264586191687	2.33537918146288	2.5460064911453	2.63776401601729	2.3714224886036	2.80452401664071	0.538423480614488	0.520447831964817	1
Merged-chr14-120289707-2	chr14	120289207	120290207	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	14038.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.46166383152586	3.81790088151953	3.94653425032887	3.55939432273805	3.31071261520859	3.78188124378536	-0.671907111161443	0.269344287234743	0.666452341991608
Merged-chr15-73424435-2	chr15	73423935	73424935	+	943.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	4.3366474494233	4.56949196565494	4.25002290679352	4.68935012187694	4.37707827342054	4.22139582840617	0.123949483938895	0.791652768838351	0.949797147757395
Merged-chr5-136908140-4	chr5	136907661	136908661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026073)	promoter-TSS (NM_026073)	11.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	6.27996929153479	6.42590780296522	5.80657337289194	6.23081115678958	6.55333785633599	6.33717657135882	0.287938400508221	0.367214156004268	0.752113401392775
Merged-chr15-72813215-3	chr15	72812667	72813667	+	716.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-2843.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	3.05663279880868	3.34292043880384	3.06019037866384	3.42066692531205	3.26567454200886	3.37129818779516	0.754318490692456	0.244927099143104	0.642351752939119
Merged-chr11-97987272-2	chr11	97986772	97987772	+	790.400024	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-826.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	5.60791021572114	5.68942766515062	5.36380580421229	5.46805036207448	5.5734204208648	5.26131283222332	-0.225440561211667	0.511740404345496	0.841519675193282
Merged-chr4-134934159-1	chr4	134933659	134934659	+	549.0	f1_c57bl6.idr	intron (NM_026780, intron 2 of 6)	intron (NM_026780, intron 2 of 6)	3179.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	2.45848238357831	2.31901476537456	2.53680056965902	2.2599829297662	2.27939186778352	2.548981705866	-0.469999290809227	0.577274094421965	1
Merged-chr4-6366496-4	chr4	6365992	6366992	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	812.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	8.91481922294068	9.36875078854743	8.73538429649382	8.88585799789676	9.42055964915835	8.7613370288756	0.0303854266042104	0.914004114412188	0.980851155332372
Merged-chr14-29960382-4	chr14	29959875	29960875	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-8005.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	3.711798574371	3.54056640553556	4.13009931269549	3.58321341723433	3.58046332421703	3.52945691621949	-0.81614694863955	0.165026922658314	0.539698941970403
Merged-chr2-18065321-7	chr2	18064822	18065822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 2 of 22)	CpG-7762	737.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	7.77527681090677	7.87966290356233	7.41062118514458	7.57861914675875	7.6018834130573	7.70504399861807	-0.123594406315626	0.610136305518069	0.885428451824695
Merged-chr14-19971467-2	chr14	19970967	19971967	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5226.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	5.87030469161036	5.9110042639313	5.39806825593419	5.69961760406308	5.69805531269392	5.52613919615187	-0.204155227763701	0.548096331011263	0.859503669232264
Merged-chr1-172520626-2	chr1	172520126	172521126	+	812.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-504.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.00841409293171	3.64410378333354	3.90654747858848	4.20019790412932	4.13807470003153	3.5833568423519	0.439486808973788	0.447165532467645	0.806270036091875
Merged-chr19-11321313-4	chr19	11320815	11321815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001276398, exon 7 of 7)	3' UTR (NM_001276398, exon 7 of 7)	13380.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	3.75602735199476	3.75800582623689	3.85992886655466	3.77101602483538	3.82688504800407	3.72509755389167	-0.0322081919993748	0.950875426184769	0.98851127513721
Merged-chr6-145599422-4	chr6	145598895	145599895	+	960.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16568.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	4.6614199976522	4.69734753231657	4.65229161666391	4.23549288101016	3.84795143269222	4.56326197646618	-1.1227982514315	0.0233681561777475	0.179043673369336
Merged-chr7-97082166-2	chr7	97081666	97082666	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	CpG	415.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	8.92169491308997	8.88864788731716	8.67057493767867	8.69569461891532	8.5688990320248	8.58505940639837	-0.299752031704797	0.143126168717097	0.50502227934974
Merged-chr1-64295501-4	chr1	64295012	64296012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-174123.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.98927446292122	6.74937612828349	6.89237600589924	6.72728133941683	6.88856507055009	6.92249861974816	-0.0497023365381015	0.844546797731787	0.96373428957366
Merged-chr7-44996858-1	chr7	44996358	44997358	+	625.0	f1_balb.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	721.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	3.87453755523902	4.05859206549709	4.5263314415659	4.04286113930027	4.13536611700636	4.5171279373227	0.185604268774272	0.727340874512483	0.930141386998351
Merged-chr11-72946155-3	chr11	72945659	72946659	+	837.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15010.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	3.81628791809575	3.62749302731345	3.71979858751224	3.89853775283646	3.67738000503712	3.62787198397171	0.0593541849476572	0.91321599848709	0.980560320145079
Merged-chr13-15848203-4	chr13	15847690	15848690	+	987.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155430, intron 3 of 3)	intron (NR_155430, intron 3 of 3)	40947.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	2.55804029416671	2.71361826593966	2.84566153741793	2.70550481862569	2.68377593852102	2.67513386962425	-0.0981644765258669	0.89566606335254	1
Merged-chr10-59969966-4	chr10	59969522	59970522	+	972.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18252.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	6.39943062595881	6.90891041666817	6.72605427717734	6.35241662736667	6.55781760447536	6.75440580015442	-0.215891069971841	0.464415671627185	0.816412565447834
Merged-chr10-128412821-4	chr10	128412326	128413326	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	1210.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	6.15554781098306	5.91087881435226	6.41843544495505	6.33306126226765	6.52086296787588	6.70428026648079	0.588302434876108	0.0522418035374643	0.292172065381458
Merged-chr8-125600211-4	chr8	125599712	125600712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015535, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	15574.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	6.63722907973172	6.6663600429678	6.76941691797932	6.36242477922103	6.46723836376275	6.3515050504979	-0.463320262745216	0.0763104991191199	0.363709703901004
Merged-chr1-61351047-4	chr1	61350561	61351561	+	895.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27371.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	3.67152541732082	2.9796921005665	3.36539694931147	3.10317102081619	3.07674968478522	3.38226170866827	-0.718910368812685	0.30673824275956	0.702981130880964
Merged-chr1-136675567-3	chr1	136675060	136676060	+	955.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7836.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	8.10694456602632	8.25311607961324	7.81894354070403	8.20938096317536	8.44427740674118	7.80443258449355	0.15537045178531	0.558680184081324	0.864744077984264
Merged-chr15-88506510-2	chr15	88506010	88507010	+	646.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-93792.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	3.35580098124449	3.47680178934803	3.60639001265098	3.98953622948269	4.31529270892822	4.08747154514636	2.24598216256709	6.86486264201356e-05	0.00205471759250599
Merged-chr7-25132112-2	chr7	25131612	25132612	+	973.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	348.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	5.60321460882966	5.67478332131414	6.11522025364265	6.22485394097322	6.3939891099614	6.23655965256459	0.843923798950493	0.00725337881020743	0.0802011468078157
Merged-chr2-143977971-2	chr2	143977471	143978471	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	33292.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	3.39864438841932	3.54388232154345	3.75842123739924	3.67309611903553	3.66059210713794	3.82714394728676	0.520889461369253	0.35539388199424	0.742368107443351
Merged-chr8-125513635-4	chr8	125513199	125514199	+	899.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-20866.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.6331933069182	4.52179897171489	4.62353400555018	4.45242195728374	4.56339990474406	4.68926162680183	-0.0595555055638426	0.886574197297911	0.973794308941933
Merged-chr10-87854587-4	chr10	87854061	87855061	+	788.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3704.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.34578786646381	4.96063436125466	5.2848942597885	4.92129964975228	4.80505290773778	4.79557300435371	-0.776553161715223	0.0448950486762721	0.267206601619645
Merged-chr7-44855361-2	chr7	44854861	44855861	+	966.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290695)	TTS (NM_001290695)	-1785.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	5.47707421401078	5.4176668102456	6.22401396451375	5.74047796817039	5.89072864140782	5.89602529064482	0.171798026645187	0.647925650215168	0.901578606359806
Merged-chr1-54911488-3	chr1	54911065	54912065	+	677.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	14822.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.92292132731191	4.6725509239675	4.41298322762269	4.32445716441133	4.34240923832459	4.84089717021278	-0.430973657477372	0.359033224372369	0.745307683821397
Merged-chr9-115733356-4	chr9	115732878	115733878	+	885.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-176077.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	2.4776847513349	2.30234668586088	2.36705062609719	2.5944426378575	2.60785700980418	2.69980600938363	1.52589990885991	0.0638081275729221	1
Merged-chr7-110842616-1	chr7	110842116	110843116	+	542.0	f1_balb.idr	intron (NM_025999, intron 1 of 5)	B4|SINE|B4	1765.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	5.63175070986318	5.72990443612218	5.70552061102391	6.05517913635063	5.90471430537659	6.25901912371413	0.675337471203461	0.0288052401581515	0.203552137841144
Merged-chr8-35376587-4	chr8	35376090	35377090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177741, intron 1 of 1)	CpG	849.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	7.37775889086954	7.34830696756093	7.22160470812044	7.26254945640771	7.37903593058367	7.06162119852229	-0.106279755280545	0.659060071380044	0.905229020277098
Merged-chr4-44030004-2	chr4	44029504	44030504	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080384, intron 5 of 5)	intron (NM_001080384, intron 5 of 5)	17354.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	3.39208443366666	3.7409514818974	3.86351692287886	3.52083540960743	3.24558234865489	3.79165051494681	-0.50416140465553	0.42113725051055	0.790131900416752
Merged-chr11-59561945-4	chr11	59561436	59562436	+	869.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	9802.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	6.39411518326819	6.60231404592364	6.61393921765592	6.48393203329341	6.28799880319249	6.55706013025624	-0.15885173773915	0.561896132484515	0.865595093712214
Merged-chr2-94157127-2	chr2	94156627	94157627	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	782.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	7.07441984848167	7.26064486735591	6.77614260819079	7.18707152542823	7.38547713604334	6.7345763506354	0.123001327718581	0.677573532755145	0.91301417812651
Merged-chr13-60671347-3	chr13	60670881	60671881	+	863.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69170.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	8.21316059189276	8.31272530677635	7.95952178482274	7.89923656208196	8.19846313523481	7.96117748740008	-0.204429804667972	0.379244158271307	0.761692242666705
Merged-chr6-146671619-4	chr6	146671109	146672109	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14391.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	4.67781482627166	4.56992999519568	4.14899412570776	3.65578401430858	3.39658671422207	3.85814115022844	-2.73510043026887	2.57442385695947e-06	0.000124542244354583
Merged-chr14-79451821-4	chr14	79451318	79452318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001034882)	promoter-TSS (NM_001034882)	-17.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	4.06057955571935	4.32750699837477	4.36251226770675	4.21967574734759	4.34842216826493	4.51067596214933	0.284538911860048	0.5407822319366	0.856546234535532
Merged-chr6-112759084-4	chr6	112758582	112759582	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080448, intron 11 of 21)	intron (NM_080448, intron 11 of 21)	-62412.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	3.78715545266673	3.87844430053316	3.78741485938576	3.62600610287083	3.31387410115493	3.70415729359231	-0.935542702566492	0.102535515046274	0.427066706837844
Merged-chr4-95051636-4	chr4	95051121	95052121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010591, exon 1 of 1)	5' UTR (NM_010591, exon 1 of 1)	601.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.55324549210614	8.91222020976658	8.43129415802262	8.56661107166501	8.75376732300078	8.56379265031948	-0.028750819603033	0.901403705532142	0.977240024208116
Merged-chr10-41261838-2	chr10	41261338	41262338	+	986.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_133999, intron 10 of 22)	intron (NM_133999, intron 10 of 22)	41403.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	4.06924490646856	3.90136437682261	3.66381101044463	4.23215083101382	4.09603910293518	4.2917820936048	0.890764966649678	0.0868827803020203	0.390564148210184
Merged-chr2-101881982-4	chr2	101881475	101882475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1052.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	6.49361447527154	6.39053866755191	6.15773416535456	6.2972950005837	6.21787410491153	6.12947956005266	-0.239079783970476	0.399539641079999	0.775915942094585
Merged-chr7-125603513-1	chr7	125603013	125604013	+	735.333313	f1_c57bl6.idr	promoter-TSS (NM_021887)	promoter-TSS (NM_021887)	84.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	3.95628519419501	3.79523529865372	4.07811145481481	4.89187167951484	5.04695920410053	4.61758598804408	2.49659570598906	1.68930717428993e-07	1.13164604013651e-05
Merged-chr12-17657769-4	chr12	17657328	17658328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-32981.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.0293778161177	7.23862376403652	7.10658226935589	7.63711449415289	7.77631451858859	7.0126351055751	0.589238564222748	0.0397548936439794	0.247951816979855
Merged-chr19-14597465-7	chr19	14596883	14597883	+	970.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302951)	promoter-TSS (NM_001302951)	-170.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	8.10770798221196	8.20176900881426	7.81436152553405	8.25736679275624	8.21684797173447	8.11185858873489	0.196894267950008	0.382398467701443	0.763970604348285
Merged-chr8-84666225-2	chr8	84665725	84666725	+	803.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3373.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.75150149154513	3.00507858475373	3.06919667155343	2.86775953396152	2.78595711500394	2.90844468269152	-0.458371486363289	0.519513459578076	0.845839622469233
Merged-chr17-31103194-1	chr17	31102694	31103694	+	576.0	f1_balb.idr	intron (NM_009593, intron 5 of 14)	intron (NM_009593, intron 5 of 14)	26417.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	2.96334913074627	2.77754947329765	3.41610295011841	3.03679276755778	2.6267036832068	3.17585429661455	-0.485245806828005	0.540987252733381	0.856635215906203
Merged-chr7-113369361-4	chr7	113368860	113369860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-21.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	6.20189911396364	6.46845301365566	6.22504566526758	6.49871244185351	6.54211730957653	6.38617974426527	0.28096552040625	0.310371551533192	0.705829393476587
Merged-chr7-25271357-2	chr7	25270857	25271857	+	886.599976	f1_balb.idr|f1_c57bl6.idr	exon (NM_001302811, exon 2 of 21)	exon (NM_001302811, exon 2 of 21)	3658.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	2.0198062328508	2.02577231189374	2.29347118263888	2.06359737161875	1.77672833102853	2.11050783604412	-0.974964777310943	0.345119101273301	1
Merged-chr7-98356710-2	chr7	98356210	98357210	+	902.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	4578.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	5.06567961546781	5.20015402396126	4.99950914806177	5.17909118664084	5.23230089759228	4.78913594089562	-0.00196665901789035	0.995928046818737	0.998961028701257
Merged-chr15-78172486-2	chr15	78171986	78172986	+	788.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025931, intron 1 of 6)	intron (NM_025931, intron 1 of 6)	1622.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	3.61240355950645	3.44675476402885	3.49463801686274	3.5332811801209	3.30008009678735	3.61840146422553	-0.138597025407462	0.813756359585423	0.955940138311315
Merged-chr16-22262996-3	chr16	22262489	22263489	+	881.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	3016.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	4.55302882955462	5.02441505642732	4.5656320861024	4.89655381720784	4.44991846038372	5.0451674318402	0.161947383229079	0.725434603520003	0.929698613727862
Merged-chr5-135934678-4	chr5	135934171	135935171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-30.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	8.42500780375219	8.55171611416423	8.24614116812207	8.080402117184	8.44894834437654	8.097923375839	-0.266189948553812	0.259612997694545	0.657223042078191
Merged-chr2-148585927-4	chr2	148585433	148586433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2|LINE|L1	-86682.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.0579297282179	4.00216632109194	4.15192642342374	4.02897755956931	3.94777251841767	4.17460078623406	-0.0632048619821223	0.896480870180516	0.975838835430135
Merged-chr11-101008791-4	chr11	101008285	101009285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	-667.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	8.54730965680882	8.86939901989054	8.10080002906519	8.33747637489023	8.95580707904129	8.04130407475254	-0.0510060692696441	0.873259135822031	0.97040331531529
Merged-chr10-127266819-3	chr10	127266338	127267338	+	897.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027151, intron 1 of 13)	CpG	576.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	7.5017754125276	7.74671457693519	7.48078643412662	7.53415354736373	7.53750337534155	7.52759185529489	-0.0783501782342723	0.73205572979474	0.931655063903171
Merged-chr14-55578472-4	chr14	55577978	55578978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-16.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	7.0659742635654	7.41833241736386	7.40597996693696	7.4022970429141	7.63985315905605	7.43166496987907	0.288423461353602	0.245994341058494	0.643123672692845
Merged-chr9-61013130-8	chr9	61012635	61013635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3934.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	5.02513010724357	5.29619338108164	5.04704836658242	5.31573406816929	5.4837024604515	5.18338819589573	0.419701129082149	0.249454378965803	0.646365357085824
Merged-chr3-88579986-2	chr3	88579487	88580487	+	727.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001356316, exon 2 of 6)	exon (NM_001356316, exon 2 of 6)	379.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	6.05392729231911	6.51306849193813	6.54551272650168	6.6406635161362	6.42527762340613	6.46530074754616	0.207614295582064	0.484091335109584	0.82665199605554
Merged-chr2-119336666-3	chr2	119336167	119337167	+	762.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10470.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	4.57818873502486	4.42894646771598	4.75947310206192	4.74535426457042	4.35836519297136	4.82424764943989	0.14352409067243	0.74667663293875	0.936300236930265
Merged-chr13-45288638-4	chr13	45288140	45289140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101102.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.81018851138422	3.2383692348859	3.50086925067977	3.23862009683205	3.4400495356944	3.4054842995038	-0.64826777181831	0.310732935957876	0.706022433069834
Merged-chr19-45664183-1	chr19	45663683	45664683	+	782.0	f0_balb.idr	Intergenic	Intergenic	-3990.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	3.27242950649207	3.1305688316022	3.18395867759125	3.36779748692044	3.48054121699124	3.53585846361421	1.05386003679143	0.0856872119896607	0.387639946459832
Merged-chr10-117837412-4	chr10	117836887	117837887	+	815.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	8587.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.66987086745098	5.68331959172393	5.97763308661275	5.88953959954958	5.889763365882	5.64108628517538	0.0829944058910955	0.794678531610254	0.950816910994853
Merged-chr11-88069123-4	chr11	88068588	88069588	+	892.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016686, intron 1 of 5)	CpG	809.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	5.78562464523787	5.40907914280171	5.45089297429217	5.93077513359321	5.46436700823659	5.57412156961976	0.197795252615081	0.577811274442646	0.87219514592351
Merged-chr1-181014355-2	chr1	181013820	181014820	+	664.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010145, intron 1 of 8)	ORR1B2|LTR|ERVL-MaLR	3249.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	5.70235049899373	5.47455009137693	5.8043943959022	6.07793524929324	6.17396867635677	5.6510397215787	0.605495798023852	0.0694518488358182	0.344832910929395
Merged-chr19-55747461-6	chr19	55746916	55747916	+	679.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	5606.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.29353399099358	5.07429354912993	5.35130632243944	5.21763599527601	5.00985550536363	5.19800228584785	-0.206023742309339	0.570138236771252	0.869072933274727
Merged-chr1-191181524-5	chr1	191181019	191182019	+	937.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	1814.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	6.78044124215234	6.62807330826255	5.96397535763928	6.94317226153986	6.75695897982018	6.29481758157032	0.290847847309979	0.406422459087592	0.780676741566939
Merged-chr8-56412210-4	chr8	56411700	56412700	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	72768.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	3.15674953520301	3.04729132700529	2.99612442181309	3.10830838340953	3.01157119515906	3.24278611972833	0.209765338648448	0.750191934965149	0.937550343416037
Merged-chr11-109364470-2	chr11	109363970	109364970	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038097)	promoter-TSS (NR_038097)	-816.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	7.76524435954785	8.11999047670326	7.27861951426687	8.13646684850043	8.22847913683773	7.43358092372945	0.300008917943252	0.35706843061059	0.743726917541594
Merged-chr2-110018447-4	chr2	110017950	110018950	+	923.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149736, intron 1 of 6)	intron (NR_149736, intron 1 of 6)	633.0	NR_149736	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	5.23069796169329	5.37893440099375	4.93157754596232	4.66994059291954	4.88484189378872	4.67247872560539	-0.96924842920202	0.0156903953195954	0.137038565524603
Merged-chr19-40637887-4	chr19	40637356	40638356	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21914.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.64276060725143	7.63092218021674	7.57629776465163	7.41104835793772	7.61732412082993	7.25634345266937	-0.250706922295359	0.286729449581321	0.683987960229425
Merged-chr6-148443091-2	chr6	148442591	148443591	+	814.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	1261.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	2.4056975987755	2.40873376840004	2.68722814943349	2.50441414586042	2.53510891743801	2.51399001343289	0.103106189384442	0.897193823281352	1
Merged-chr6-90551440-2	chr6	90550940	90551940	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027406, intron 1 of 22)	intron (NM_027406, intron 1 of 22)	647.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	4.01071282946841	3.93229216300395	4.16241560983447	3.81069327468075	3.68800356561824	4.09781914565506	-0.514233975960449	0.325897358242087	0.718338208863777
Merged-chr6-33249050-4	chr6	33248551	33249551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009148)	promoter-TSS (NM_009148)	-77.0	NM_009148	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	5.59749526931148	5.61770635668341	5.53966831740377	5.80754436618925	5.70317882241752	5.01366596470339	-0.0363802716647344	0.92410918613479	0.982900348453983
Merged-chr15-81017341-2	chr15	81016841	81017841	+	797.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 10 of 13)	intron (NM_001082536, intron 10 of 13)	39576.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	1.93877161474695	1.97733600597335	2.13779626898148	1.92840417452847	1.8490318455556	1.88088031343056	-1.12592251984225	0.246626814409484	1
Merged-chr10-44636246-2	chr10	44635746	44636746	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177498.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.1265761880938	6.38261388207721	6.44149341030144	6.14500400159475	5.91820672234643	6.13482397477389	-0.431976773185328	0.141410901728406	0.502177385131545
Merged-chr5-76179402-4	chr5	76178911	76179911	+	834.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4469.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	3.48992611861481	3.54329660434571	3.64895509466045	3.40746004545017	3.11767572526443	3.40222508924539	-0.967537886481773	0.113864260915484	0.450797802838443
Merged-chr1-55666411-4	chr1	55665891	55666891	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	260445.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	4.62408279348235	4.42065155877978	4.701162071155	5.41214771629707	5.50187547390496	5.24407554475055	1.78270255473356	3.66627108021549e-06	0.000168700209401517
Merged-chr17-24162875-4	chr17	24162407	24163407	+	895.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361535)	TTS (NM_001361535)	826.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	7.21799643598651	7.63978441794892	7.30484803336294	7.07607783982884	6.89630958716164	7.01677042498936	-0.614456835441966	0.0166098448255159	0.142731794716672
Merged-chr11-68864898-4	chr11	68864343	68865343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11712.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	7.44256514605618	7.51486589054871	7.04453348076153	7.26596531138335	7.58874955830868	7.24558488963866	0.036273779188937	0.891490879939681	0.97481556123419
Merged-chr1-165652248-2	chr1	165651748	165652748	+	909.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-17707.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.01219287346787	4.68810777712797	4.96854984104724	4.41846261221028	4.31474168143304	4.45634546916068	-0.53025329805019	0.306345424114246	0.702504893198242
Merged-chr15-96285563-4	chr15	96285071	96286071	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1951.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	8.75011317139048	8.70476161347992	8.40633129384845	8.54680142400698	8.6646577552576	8.55083297949538	-0.0610788579226508	0.775589129897915	0.944685135119386
Merged-chr12-32637747-3	chr12	32637228	32638228	+	674.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182607.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.57071492251703	3.91613896753816	3.44873127628448	3.24919153709099	3.49177753807167	3.40469073741766	-1.00870859284248	0.104346394190376	0.430976609142897
Merged-chr6-86370990-2	chr6	86370490	86371490	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-550.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	7.13548850736023	7.23971812799725	6.93365730498935	7.23937383843643	7.39440499329792	7.03456758455	0.185169698981768	0.466714857269609	0.817646675637448
Merged-chr5-137787317-4	chr5	137786824	137787824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-7.0	NM_001360023	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	7.75004724970251	7.77362419154739	7.71536771177519	7.72672335926016	8.11407377954385	7.78060553258042	0.208309094452443	0.372622970397498	0.756464540484423
Merged-chr19-18616750-2	chr19	18616145	18617145	+	943.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	15168.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.56626024979084	5.76682516286517	5.49821855192428	5.8284685897363	5.96520971150462	5.90993111139466	0.505936372065578	0.107090176874417	0.436731001427041
Merged-chr8-115597788-3	chr8	115597277	115598277	+	765.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	109117.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.43593546109934	5.43165470809072	5.48002751799647	5.05599617132125	5.03632041298467	5.21103545905482	-0.710621872634356	0.0397240767740174	0.247815338147581
Merged-chr4-7314444-3	chr4	7314051	7315051	+	609.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-246137.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	2.96637641091108	2.99578105987691	3.13904203417435	2.79256525319783	2.83005912974304	2.79663231223752	-1.10769943765707	0.116906941080405	0.456544457381064
Merged-chr17-33524688-2	chr17	33524188	33525188	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001329147, intron 1 of 22)	intron (NM_001329147, intron 1 of 22)	603.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	3.50354265422148	3.56043753574655	3.43205243751396	3.52710621450446	3.26857885012874	3.66278134594944	-0.0539828196977097	0.927889843814245	0.983740101474131
Merged-chr9-25516097-2	chr9	25515597	25516597	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	34500.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.14212749914994	3.4258914135539	3.27754158657638	3.5065953590663	3.50705036393584	3.35028586117138	0.658806051079729	0.284494206476782	0.682238657188254
Merged-chr2-35330975-4	chr2	35330464	35331464	+	962.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	6045.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	5.75453883213682	5.85481637760861	5.82184278631589	5.60641508127785	5.72559027996701	5.73146855841045	-0.220972842622279	0.471306608339455	0.819931009778782
Merged-chr8-77543536-3	chr8	77543031	77544031	+	800.216675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5866.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	2.65243246039809	2.51676516370596	2.4488875640128	2.7126351952028	2.55657133640128	2.7184540623581	0.658425825294128	0.400444742386368	1
Merged-chr13-45976423-2	chr13	45975923	45976923	+	544.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-11432.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.06544573579304	3.86921585604605	4.39366068067865	4.0266685233901	4.05127470721536	4.25496284260958	-0.0193158255682629	0.969711999661121	0.993198925979166
Merged-chr11-89089797-1	chr11	89089297	89090297	+	573.0	f0_c57.idr	intron (NM_001033266, intron 3 of 3)	MLTR14|LTR|ERV1	15956.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	3.34240238362861	3.29636961712142	3.63795835614469	4.93447376647411	5.41442024301065	4.97988568596199	8.44940871897623	7.54565627376776e-12	1.2507150741587e-09
Merged-chr19-12469645-2	chr19	12469145	12470145	+	670.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172442, exon 9 of 9)	exon (NM_172442, exon 9 of 9)	8866.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	4.10706943705674	3.95543775983682	4.66031058421471	3.68394655538098	3.50444642837313	4.24703426539597	-1.22798915211663	0.0449405034395529	0.267329811995876
Merged-chr1-180793669-4	chr1	180793164	180794164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19941.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.37558948251484	3.79674513080469	3.5320605371112	3.99100550579472	3.880362397544	4.14493910134345	0.144915189348765	0.811899188706197	0.955348413240168
Merged-chr9-108716364-4	chr9	108715849	108716849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008924, intron 2 of 10)	B4A|SINE|B4	24206.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	4.2200616927803	4.02728931646456	4.3017555279214	4.45203982893261	3.86855019948137	4.41093374905021	0.217402384844726	0.672600093326726	0.910938885678047
Merged-chr15-79934042-5	chr15	79933577	79934577	+	837.483337	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	2.60869144644879	2.53577775749207	2.66979433308335	2.77901455474898	2.43027182864047	2.74360950863876	0.293068516006539	0.708956780710787	1
Merged-chr6-116194142-2	chr6	116193642	116194642	+	880.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-768.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	5.63440548121029	5.76491917667939	5.48676094221468	6.17935248139348	6.10278129010405	5.61292657409516	0.638417135340869	0.0586022983834492	0.313077370394224
Merged-chr5-125178652-3	chr5	125178163	125179163	+	943.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253905, intron 1 of 42)	CpG	551.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	6.57719442713041	6.89874432045931	7.07274605306678	6.74140088677824	6.66494572713669	6.63292998527209	-0.276674968307444	0.312043144958164	0.706880086573454
Merged-chr12-80872593-2	chr12	80872093	80873093	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 5 of 6)	MTC|LTR|ERVL-MaLR	51854.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	2.864409643792	2.79008315690528	3.00200152939013	3.11761439082866	2.93020332399311	3.01545397450135	0.660881309149858	0.337034234847837	0.726960225347198
Merged-chr9-66513944-2	chr9	66513444	66514444	+	737.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001302116)	TTS (NM_001302116)	649.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	2.38299665196172	2.54768719857223	2.6126995879569	2.38322632974655	2.24548605041825	2.74523267709611	-0.263508915591988	0.759396778218871	1
Merged-chr3-19162205-2	chr3	19161705	19162705	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357689, intron 1 of 6)	intron (NM_001357689, intron 1 of 6)	890.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	4.86548784224788	4.85432700454441	5.26485060280991	5.18422752315124	5.07911543839363	5.26765179223956	0.377224877690986	0.322913431961445	0.716334235694045
Merged-chr7-46832787-2	chr7	46832287	46833287	+	887.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13017.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	5.33334639012626	5.26061922843287	5.33784342455721	5.40608120123603	5.3621059992197	5.27474980294378	0.0854246348542582	0.800558146467571	0.952578218639958
Merged-chr10-11149328-4	chr10	11148852	11149852	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172937)	promoter-TSS (NM_172937)	-78.0	NM_001077707	268281.0	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	6.0484916435915	5.91164933614366	6.02054864318488	5.77508850498471	5.73077240939025	6.08101310064471	-0.235783550426569	0.442594160843741	0.803284363641017
Merged-chr4-141301224-4	chr4	141300718	141301718	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-3.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	4.81161318640746	4.52494454472453	4.60966622012184	4.66426944518191	3.87134201090677	4.12935043797402	-0.972284800984516	0.0633138176636081	0.327727287101306
Merged-chr11-82867144-2	chr11	82866644	82867644	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	3600.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	5.42024315030009	5.67863430107705	5.40752955445323	5.97418298153119	5.82626066656585	5.53413707261157	0.521751362192076	0.122835868527916	0.468914389524744
Merged-chr10-111010747-2	chr10	111010247	111011247	+	801.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-681.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	6.53509795473454	6.46012753340482	6.29609035083792	6.59590217914778	6.78704970075984	6.35651990921871	0.26233031075376	0.352643663000929	0.740194084833795
Merged-chr2-157838433-4	chr2	157837944	157838944	+	955.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-76209.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	5.23049218821245	5.14225783233827	5.34847591659256	4.47960811998695	4.67919175722753	5.00899612412891	-1.10988920224428	0.00586298894516503	0.0686432509004209
Merged-chr7-120940513-3	chr7	120939999	120940999	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025298, exon 18 of 21)	exon (NM_025298, exon 18 of 21)	22755.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	2.93161622547504	2.61707712387044	2.84305652317221	2.60481595876797	2.41194185752897	2.73466434744326	-1.22408351131171	0.128744038558865	0.479799601167289
Merged-chr7-97154469-2	chr7	97153969	97154969	+	541.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	72718.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.9733226504063	5.07111417169737	5.21146202173565	5.26010346619713	5.27033683435215	5.14386873231653	0.308527347822587	0.38851091855071	0.768380148171071
Merged-chr15-27706817-1	chr15	27706317	27707317	+	564.0	f0_balb.idr	Intergenic	Intergenic	-25275.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	2.77163620071341	2.69004885514292	2.76201471617983	2.5257241827919	2.22882360903469	2.58713672912059	-1.80365291378149	0.0448468270714302	1
Merged-chr3-40800540-2	chr3	40800040	40801040	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045576, intron 1 of 15)	CpG	589.0	NR_045576	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	5.99770288401819	6.05275683983176	5.86163072036328	6.09937001026794	5.98312200050893	5.9232236542306	0.0459432376375152	0.875913264746665	0.971136321106511
Merged-chr11-116025487-2	chr11	116024987	116025987	+	918.6666869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	-983.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	5.96793257958427	5.99925766799679	6.03971246411895	6.14239762044651	6.57149967605815	6.59333648555628	0.754665577273352	0.0111319960271487	0.108443183282744
Merged-chr1-43910846-3	chr1	43910367	43911367	+	904.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MusHAL1|LINE|L1	-23127.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	5.39689545499401	5.46280032150675	5.3329336554921	5.34076141243569	5.65333348367259	5.42777068153923	0.168409693722515	0.62071322869705	0.890303839437084
Merged-chr2-180120694-2	chr2	180120194	180121194	+	590.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	1328.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	4.22964646166156	4.3634855118154	4.19968826548816	4.1819110713192	4.06758700267472	4.12611582837366	-0.407304117361502	0.381731868666419	0.76334093111637
Merged-chr17-71618257-3	chr17	71617792	71618792	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175639, intron 1 of 17)	ID4_|SINE|ID	2077.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	4.14243887468699	4.20605564035223	4.00480751459954	4.18241537538251	4.28300631013764	4.35457139266339	0.402236207931112	0.390925757614747	0.770052731867201
Merged-chr4-122961577-2	chr4	122961077	122962077	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029662)	promoter-TSS (NM_029662)	-389.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	3.56577152446386	3.23515819668981	3.29089268299488	3.35409254720115	3.36962534790138	3.05214033367161	-0.402564474705757	0.54177660387627	0.856939277940475
Merged-chr11-100701515-4	chr11	100701024	100702024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030150, intron 6 of 12)	intron (NM_030150, intron 6 of 12)	2747.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	5.6100793936497	5.27532020569573	5.5298976654172	5.51387515274623	5.66277161153393	5.25000447302297	0.0429976692773215	0.90321501103873	0.977774932522939
Merged-chr19-34198181-4	chr19	34197682	34198682	+	786.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360718, intron 1 of 10)	Lx5c|LINE|L1	5248.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	5.90110544803495	5.78813027268854	5.93944502978785	6.17802878743774	6.17338623444499	6.31580746872457	0.59565352666088	0.0388739499725928	0.244417683944348
Merged-chr16-33776917-3	chr16	33776416	33777416	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17121.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.53540810542524	3.19304382280438	3.3499909591032	3.80161972205272	3.41337245492762	3.4811628983766	0.764140173132189	0.218785724328164	0.61302559317272
Merged-chr9-123475769-4	chr9	123475258	123476258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-2943.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	4.50687399193786	4.65886472998475	4.81452732677513	4.77250658449832	4.83867952650554	4.64760035867294	0.242675499907641	0.553257526996381	0.862238984416102
Merged-chr18-49945640-4	chr18	49945130	49946130	+	989.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081371, intron 37 of 42)	intron (NM_001081371, intron 37 of 42)	-33797.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.73637055169774	4.93723894745549	5.06225257765325	4.76362846892492	4.32752725582442	4.57645748148147	-0.8181704536037	0.056585140603319	0.306692051805691
Merged-chr8-47702516-4	chr8	47702023	47703023	+	908.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11408.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	3.75892407031398	3.63990577849591	3.98485110870802	4.20231511564892	4.289725763623	3.8499764538099	1.03846367318175	0.0507043985930466	0.286812481178125
Merged-chr11-21221691-3	chr11	21221173	21222173	+	638.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17359.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	3.19230963654201	3.72857728865242	3.63001286396945	3.61067197345642	3.63677222987354	3.84863165321662	0.55115351716838	0.371839575508789	0.755841610252976
Merged-chr2-129198646-4	chr2	129198097	129199097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-176.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	8.86353564120633	8.8228201433151	8.13577562521366	8.45115689523252	8.64828472850778	8.18409031617174	-0.288845102599949	0.298511081952687	0.695230780841357
Merged-chr4-132898429-3	chr4	132897910	132898910	+	717.450012	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001163792)	TTS (NM_001163792)	-13952.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	3.56882750226778	3.39728845824248	3.69825983359472	4.83881426353609	4.60471283608312	4.6350747290701	3.70755209284584	3.29735252236461e-10	3.92512315709463e-08
Merged-chr12-28635323-1	chr12	28634823	28635823	+	591.0	f0_balb.idr	intron (NM_011300, intron 3 of 6)	intron (NM_011300, intron 3 of 6)	630.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	7.08538988879314	7.70919502806827	6.78014637177573	7.31569665599011	7.13630022025415	6.97877717499586	-0.165342287000383	0.605709427578194	0.883581756351046
Merged-chr18-77794698-4	chr18	77794211	77795211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152167, exon 3 of 3)	non-coding (NR_152167, exon 3 of 3)	161.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	7.19449348667656	7.00216470000065	7.12863970806698	7.26225118646725	7.19412426089146	7.11039235642556	0.125034393884158	0.598998011486074	0.880902871165758
Merged-chr5-113009788-4	chr5	113009350	113010350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	5688.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	5.3799032158392	5.1104060978524	5.59625585275949	4.99606049588095	5.06720625614149	5.10304368020607	-0.636518152636081	0.087792971554327	0.39314705594282
Merged-chr16-64801831-3	chr16	64801328	64802328	+	780.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347245, intron 3 of 8)	ORR1A2|LTR|ERVL-MaLR	-15507.0	NM_028059	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	3.25714337551919	3.29384143361199	3.275535376621	3.01962314349953	2.82538900264624	3.2357317457326	-1.10133448210587	0.107089251949276	0.436731001427041
Merged-chr16-91375147-4	chr16	91374658	91375658	+	963.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 1 of 7)	ORR1C2|LTR|ERVL-MaLR	2375.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.78232583741463	6.87119058649168	6.76508358447169	6.98113395357469	6.84453293001967	6.28755530379397	-0.0906224483202298	0.75837802784899	0.940121252394213
Merged-chr10-100059464-4	chr10	100058957	100059957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 2 of 8)	intron (NM_001347156, intron 2 of 8)	43636.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	4.99307991400715	5.2011319303367	4.84510445191669	4.8693015658579	4.64672150345723	4.71106063494863	-0.637681820856251	0.108785083098314	0.440712264201982
Merged-chr1-165663917-4	chr1	165663425	165664425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178593, intron 2 of 6)	intron (NM_178593, intron 2 of 6)	-29384.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.43830637888941	6.10661437135515	6.44427710813091	6.58078293646542	6.16091431120102	6.43168987346335	0.103572010274117	0.729758068170841	0.930635866770147
Merged-chr13-44164341-5	chr13	44163819	44164819	+	888.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43152.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	4.38979276112149	4.07780219242969	4.26584641834089	4.41931700236537	4.31005005696912	4.28845296633921	0.242700921007026	0.59855681507687	0.880808927175713
Merged-chr2-60910918-4	chr2	60910404	60911404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-29466.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.12682547754508	5.08492579735042	4.79879983655859	5.07209495024788	5.15176548567244	4.74008884174133	-0.0179769043424953	0.963960446612654	0.991245333081322
Merged-chr8-60971465-2	chr8	60970965	60971965	+	737.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	11846.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	3.59184039187443	4.0799727677908	3.93037360311812	4.00376375084269	3.8712249592698	3.79562252020937	0.0290675161157422	0.957578609281422	0.98996830630481
Merged-chr7-44401878-4	chr7	44401393	44402393	+	900.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	17767.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	2.78980123289616	2.8479784854753	2.87339587188039	3.07145263816035	3.07972592458964	3.00812859555628	1.06049931917547	0.121907189963874	0.467040538814586
Merged-chr13-111796670-4	chr13	111796162	111797162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	12331.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	7.57423236700694	7.53718515381167	7.37440022412325	7.57140735658208	7.66556506811865	7.20554280348881	0.00544667406119795	0.98253768523662	0.996025201140234
Merged-chr7-55859665-4	chr7	55859179	55860179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	17608.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	4.23070445159747	3.75387851214644	4.12706290328372	4.22203481018648	3.8739759943135	4.74078757710467	0.731268257730799	0.197301841783889	0.585298864289769
Merged-chr10-4385932-2	chr10	4385432	4386432	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033466, intron 1 of 2)	intron (NM_001033466, intron 1 of 2)	1543.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.02471124790541	4.48575857087357	4.50890523084148	4.39480789622291	4.09173267830674	4.53548635821644	-0.0260151053850137	0.958156043083137	0.990000537228272
Merged-chr15-79408901-4	chr15	79408380	79409380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5577.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	7.11023722350649	6.8683035617724	6.91549890744042	6.79118372552635	6.83774737747189	6.57620761813976	-0.344333660108035	0.18323175950024	0.566231458237241
Merged-chr15-58798201-4	chr15	58797701	58798701	+	810.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25226.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.75895092835456	4.84211201262953	4.89575096482585	5.4121684505923	5.18953246346836	5.07144754520487	0.865652424251556	0.0210377569869766	0.16689965496622
Merged-chr11-101067195-4	chr11	101066713	101067713	+	693.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2881.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	2.63158937191007	2.34352979021716	2.65829371891719	2.80938872633695	2.50864577695882	2.73255900075182	0.768167829501079	0.346145141138437	1
Merged-chr5-66075959-2	chr5	66075459	66076459	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	22220.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.46260252755248	6.54374374593185	6.63130668103993	6.62617083801008	6.57217209558669	6.84118851881603	0.212547796976739	0.420814315253048	0.789927346042947
Merged-chr17-71256020-4	chr17	71255484	71256484	+	820.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001357336, exon 6 of 8)	exon (NM_001357336, exon 6 of 8)	51330.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.94135338621005	3.73172641478064	4.01133485422869	3.73216935088946	3.10852657524141	3.52482954800725	-1.44370866098112	0.0261983809567954	0.192215402755756
Merged-chr8-76899180-4	chr8	76898666	76899666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	1455.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	7.34340971053865	7.34688896244916	6.80785534838842	6.92153235041216	6.74925644788285	6.75403086850243	-0.593981540766123	0.0310042812384524	0.213182359211978
Merged-chr5-108132679-4	chr5	108132179	108133179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361467)	promoter-TSS (NM_001361467)	-59.0	NM_001361467	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	8.01844133774434	8.60403742891863	8.17645840166316	7.90172712923473	8.29669963475201	8.09568822468245	-0.258450825587963	0.322641772773961	0.715998843285126
Merged-chr11-114895543-2	chr11	114895043	114896043	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_170758, intron 3 of 6)	ORR1D1|LTR|ERVL-MaLR	5502.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	5.58725854756701	5.28487415265596	5.87915955953585	5.32766621094347	5.35688578201206	5.54898524747607	-0.354195308920798	0.326371410805388	0.718672362177046
Merged-chr3-154584551-4	chr3	154584082	154585082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168358, intron 4 of 4)	B4A|SINE|B4	-12129.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	5.99855641151495	6.10077320446426	5.86820769393484	5.82777474479242	5.75275482346191	5.82950736767317	-0.351727121793622	0.240067866648078	0.637057344576547
Merged-chr4-126321133-1	chr4	126320633	126321633	+	699.0	f0_c57.idr	TTS (NM_011902)	TTS (NM_011902)	570.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	6.95899683555406	7.08215229080852	6.91432773622264	6.8494416009047	6.8136294704414	6.68075931226258	-0.31401112708354	0.205369650456049	0.596047563330878
Merged-chr3-132169222-4	chr3	132168684	132169684	+	939.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83892.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.6475024210595	3.72508411204276	3.89313521152297	3.6764951817697	3.59651892076055	3.66288637455382	-0.370118486112612	0.495210586899259	0.832371001962164
Merged-chr1-180226017-4	chr1	180225508	180226508	+	922.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011183)	TTS (NM_011183)	19942.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.38518371049547	4.5352492666929	4.21154896688978	4.45515202619119	4.2299939363215	4.28094355360817	-0.178689412244125	0.696395561950991	0.919442007192133
Merged-chr8-20122299-4	chr8	20121874	20122874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	175058.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	5.88188164773129	5.99506666169088	5.63344464157885	5.84838029237775	5.54937381945625	5.48765990426954	-0.387730953041142	0.241932503321876	0.63900960976436
Merged-chr11-53774836-4	chr11	53774325	53775325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 7 of 9)	intron (NM_001159393, intron 7 of 9)	4352.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	5.15869157309225	5.28125731953371	5.16171214972074	5.81599556274532	5.52661598216194	5.62115847675988	0.888429528561494	0.00922980812373734	0.0952045811270362
Merged-chr8-83700619-3	chr8	83700099	83701099	+	687.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1420.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	3.58150902406817	3.22062080961031	3.33352056173382	2.92772352067034	3.29512590355876	3.40476942179102	-0.653520363869214	0.342415531188607	0.731306390936577
Merged-chr10-63245033-2	chr10	63244533	63245533	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 1 of 22)	B3|SINE|B2	1236.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	5.67095308513896	5.96919633962594	5.8699303486172	6.011691184166	6.3110793255341	6.19981626940654	0.589475426815424	0.0535745499113195	0.29681126687492
Merged-chr9-120602119-4	chr9	120601604	120602604	+	890.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24773.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.68390212622108	4.90230823011536	4.81669011581043	3.93940918851622	4.08242450522347	4.45904781646267	-1.64274441235976	0.000485676616925668	0.0102725419270846
Merged-chr3-137975667-1	chr3	137975167	137976167	+	578.0	f0_balb.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	5882.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	3.27039932270738	3.08115754817573	3.00315372614364	3.07325439647224	2.9929729335321	3.19498865375583	-0.18787566978976	0.777367961255835	0.945093216103975
Merged-chr10-127538481-3	chr10	127537980	127538980	+	908.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008512, exon 89 of 89)	3' UTR (NM_008512, exon 89 of 89)	-3921.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.47319452445831	2.43960387394254	2.7168265492172	2.53489188124132	2.56410840606104	2.545502100674	0.0340525783756021	0.965445645622874	1
Merged-chr17-80207380-4	chr17	80206873	80207873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-68.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	7.53931078147454	7.45288253403133	7.532819634462	7.32635686277743	7.37675401684455	7.46062602810753	-0.178345790698563	0.425232505358123	0.792988748085012
Merged-chr10-37141796-4	chr10	37141296	37142296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-2870.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.58273794222006	5.62293465128502	5.43578726192462	5.31498688032275	5.43588632846484	5.69216647285263	-0.141195348837955	0.67563856933056	0.912256104731418
Merged-chr12-8928804-4	chr12	8928290	8929290	+	792.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	7483.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	6.02592926918345	5.72838690251763	6.00186134078025	6.07898635446724	6.05007729204237	6.30816937017722	0.383075165050986	0.207169868496917	0.597920729067479
Merged-chr16-4719246-4	chr16	4718749	4719749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001290761, exon 1 of 5)	5' UTR (NM_001290761, exon 1 of 5)	107.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	6.62831482077215	6.54838485759829	6.51433765117312	6.6009920392732	6.72052277724014	6.42555152940667	0.04945566489952	0.852213407155448	0.96531854415899
Merged-chr8-11180052-3	chr8	11179561	11180561	+	997.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132744.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.02188786370708	4.01434404088892	4.21926044673059	3.48142148231607	3.17224263165065	3.83846300573015	-1.9504026853419	0.00214098494517357	0.0325085903864968
Merged-chr9-63611650-2	chr9	63611150	63612150	+	651.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9004.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	6.90252716265653	6.74444234959374	6.72324533860934	7.01361222886244	7.18344608664213	6.51734216760389	0.23721202773409	0.411971966268828	0.784193340882693
Merged-chr12-31350441-3	chr12	31349952	31350952	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007861, intron 1 of 13)	intron (NM_007861, intron 1 of 13)	1019.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	5.45651366795541	5.36616811856856	5.38883726170227	5.5078789528028	5.40572524967616	5.42177914433202	0.0778819997170622	0.813521099122597	0.955940138311315
Merged-chr8-70841285-4	chr8	70840777	70841777	+	915.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_032397)	TTS (NM_032397)	-1557.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	4.00108305896183	3.8582955531713	4.10292675888392	3.75602770130859	3.705499760403	3.78792872452412	-0.757200199724511	0.14470938662862	0.507565596366151
Merged-chr7-83720481-4	chr7	83719953	83720953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 2 of 18)	intron (NM_001360088, intron 2 of 18)	11945.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.26842753831857	3.06357445653075	3.17953306314778	3.36374367619205	3.58261179679674	3.4805654591243	1.2361321709736	0.0479296533963211	0.27754712087538
Merged-chr2-160060745-2	chr2	160060245	160061245	+	858.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44092.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.60754397047148	5.44313793552461	5.84547862120512	5.49795635360443	5.33405220915952	5.3755086922785	-0.435712804080657	0.200845270633176	0.590152315800737
Merged-chr3-96251932-4	chr3	96251452	96252452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5252.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	6.78389072535449	6.99530673052032	6.74273916861419	7.17852440816251	7.28044215967573	6.90990028189535	0.442066189538713	0.0890776087372514	0.396531653531415
Merged-chr11-69412557-1	chr11	69412057	69413057	+	1000.0	f1_balb.idr	intron (NM_001017426, intron 1 of 22)	MIRb|SINE|MIR	1118.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	6.48341542858227	6.05393176062131	6.1396140115831	6.1436570344363	6.55507513914847	6.36405791038501	0.209519720721234	0.497904738809049	0.833817084327451
Merged-chr9-57585164-4	chr9	57584660	57585660	+	993.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022813, intron 7 of 8)	RSINE1|SINE|B4	-4292.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	4.64353316287042	4.34351721873018	4.81350828490759	4.39204760223378	4.31362853599922	4.69957451048072	-0.339397458838566	0.457442163357684	0.812284129261024
Merged-chr8-25603542-4	chr8	25603106	25604106	+	944.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	1322.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	5.67725769526466	5.65398794350055	5.84887139788449	6.17918644231694	6.52268121843983	5.88574881979664	0.893129690142403	0.00624088404939054	0.0717947573595587
Merged-chr6-122811018-4	chr6	122810541	122811541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9143.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	8.38860025561059	8.52524651031532	8.04770786740398	8.20508676226089	8.37238450966069	8.13251018620516	-0.137542632862766	0.558866853986898	0.864883618129129
Merged-chr1-131967439-3	chr1	131966935	131967935	+	770.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	-3174.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	3.8705806148961	3.92932635323848	3.65349088927978	3.68335465836265	3.62494594079426	3.49561328668577	-0.744422298973908	0.180475063977235	0.56237011284941
Merged-chr19-6907773-4	chr19	6907248	6908248	+	987.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012021, intron 2 of 5)	intron (NM_012021, intron 2 of 5)	-1950.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	5.60157647157241	5.85478399005433	6.26106652604705	6.24274164922228	6.34427621130258	6.56295388546206	0.786280000611651	0.016158912985723	0.139780728944385
Merged-chr3-65396983-4	chr3	65396487	65397487	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4434.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	5.08291707177148	5.27982302448001	5.10679223290754	5.0368171508184	5.02460411353446	5.32927031653737	-0.0752701538827459	0.8381716657487	0.962431352564932
Merged-chr4-83322954-3	chr4	83322450	83323450	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	1239.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	5.83858263728663	6.25318473331136	5.96983285312375	6.02904652518179	6.27607353591057	6.32624029773719	0.301116737813889	0.32973524589236	0.721504110160967
Merged-chr3-16181413-4	chr3	16180919	16181919	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-1746.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	6.00929285678524	6.57031165978007	6.15276197802573	5.37398947821037	5.81213938467298	5.74190434288128	-1.06767227967927	0.00204754129638535	0.0315299477224167
Merged-chr12-21462824-4	chr12	21462307	21463307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45371.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	4.55368958963221	4.32647065778885	4.92462983844283	5.1419227780037	5.13207768097875	5.24752867340745	1.257634299505	0.00255612063134437	0.0373270771310815
Merged-chr19-10858909-2	chr19	10858409	10859409	+	842.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023044)	TTS (NM_023044)	10870.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	3.14274080333005	2.88532664488936	3.50666172437682	3.17733126314968	3.16300209869791	3.57587908653268	0.462855728097236	0.513099476673514	0.842339572951558
Merged-chr17-25183505-2	chr17	25183050	25184050	+	870.541626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1011.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	5.49114368393985	5.52938348341486	5.22508222836454	5.52298440278355	5.59803871626455	5.14713789969639	0.0377098518143961	0.916550531568233	0.981312252061916
Merged-chr1-105781052-3	chr1	105780582	105781582	+	880.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	359.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.44454618869441	6.53853095679086	6.41891455461365	6.51172261268497	6.68583664456138	6.77809883402032	0.301840100799309	0.253538389890339	0.650896916687683
Merged-chr18-64594083-3	chr18	64593564	64594564	+	998.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	MTEa|LTR|ERVL-MaLR	66936.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	3.24740411599932	2.90824928971314	3.02428991742423	2.78427365856638	2.71147793473121	2.7881427188925	-1.5704672813501	0.0328379975368177	0.220798715074224
Merged-chr2-73521992-2	chr2	73521492	73522492	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	7495.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.74740978473736	3.91682220426047	3.52540460180048	3.96034721878356	3.5525211459964	3.92006461841751	0.232359647265529	0.686721899588528	0.91687527626078
Merged-chr14-18271146-4	chr14	18270644	18271644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316711)	promoter-TSS (NM_001316711)	8.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	7.28055574866734	7.64455431735489	7.30795691086602	7.14821497818812	7.4288480362586	7.34280792759635	-0.166987366257939	0.509067414110477	0.840229333570796
Merged-chr12-86888776-5	chr12	86888291	86889291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGGG)n|Simple_repeat|Simple_repeat	-3977.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.46816304954672	7.42346293114563	7.67213724420502	7.73650908359926	8.26888170705025	7.65541973642444	0.583417752870725	0.0293407797674348	0.205937376878002
Merged-chr14-55579112-2	chr14	55578612	55579612	+	704.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011189, intron 1 of 10)	intron (NM_011189, intron 1 of 10)	618.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	6.41502312982358	6.68846803364709	6.59128456649027	6.47093061998804	6.81645450176505	6.83610438108899	0.234891482038827	0.396325591611344	0.773610299024038
Merged-chr12-54794036-3	chr12	54793546	54794546	+	701.972229	f0_balb.idr|f0_c57.idr|f1_balb.idr	intron (NM_026998, intron 2 of 13)	B3A|SINE|B2	1616.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	5.39467125584557	5.40594885120562	5.40758974484465	5.61125062283842	5.41195513121904	5.52922789409957	0.21846394271803	0.507339346886108	0.838967570947531
Merged-chr5-124553429-2	chr5	124552929	124553929	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190795, intron 1 of 13)	intron (NM_001190795, intron 1 of 13)	565.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	6.4108858611148	6.48402631458658	6.01139105685459	5.87231530233101	6.30842361028897	5.8436064655982	-0.481566340403992	0.143234084666365	0.505223472527295
Merged-chr12-8674134-4	chr12	8673604	8674604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160219)	promoter-TSS (NM_001160219)	-30.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	7.84144609311862	7.81185852642671	7.80822336204402	7.9160475765179	7.66621822526752	7.66285322592557	-0.0949478406916442	0.668864719770785	0.909385924601941
Merged-chr6-38640799-3	chr6	38640325	38641325	+	722.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3586.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	4.45701080345049	4.40262696985413	4.48889469388099	4.12555663348606	4.41700355234978	4.34271528358761	-0.370679180012566	0.410294883556337	0.783163458863978
Merged-chr11-21033047-3	chr11	21032542	21033542	+	868.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-58282.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.86850650700797	5.63147883090391	5.99990484964047	6.48015766618343	6.27972397915498	6.21289364683187	0.854945594600618	0.00455651485600473	0.0573459282715489
Merged-chr15-101128326-2	chr15	101127859	101128859	+	751.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277259)	promoter-TSS (NM_001277259)	-163.0	NM_001277258	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	4.21628774971965	4.73201065884411	4.42278688013126	4.27710018887221	4.41599578085418	4.31183703902106	-0.360232225678595	0.442429653696225	0.803210813434975
Merged-chr18-34261781-2	chr18	34261281	34262281	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	14087.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.95809244677703	4.06469697531284	3.98498560703704	4.05099088332118	4.44800599063122	4.05516619838855	0.585812590673582	0.241854832062815	0.638865297342309
Merged-chr6-48602831-1	chr6	48602331	48603331	+	553.0	f1_balb.idr	Intergenic	Intergenic	8948.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	2.45529694015149	2.45777758006546	2.75327943306731	2.70145414934941	2.27733939105914	2.82661483852162	0.338580695500406	0.694908813153963	0.919230570201314
Merged-chr6-91878027-4	chr6	91877583	91878583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172730)	promoter-TSS (NM_172730)	30.0	NM_172730	232236.0	Mm.234879	NM_172730	ENSMUSG00000034083	Ccdc174	C130022K22Rik	coiled-coil domain containing 174	protein-coding	6.5489665743502	6.83630206898085	6.57588877159758	6.76550771301475	7.01368547376305	6.61776504619207	0.241867037821374	0.38105073608418	0.762958584368558
Merged-chr4-133941659-4	chr4	133941158	133942158	+	976.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26333.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	5.14157950026161	4.96914963753736	4.55573208018052	4.18090479672332	4.06765386101951	4.30217960380401	-1.87289262961082	4.89651169528021e-05	0.00155388613707428
Merged-chr6-71493932-4	chr6	71493439	71494439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308303)	promoter-TSS (NM_001308303)	62.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	8.27201151838749	8.37438037695222	8.16244233454761	8.16937949040483	8.28735434713103	8.3259240946191	-0.020093485385794	0.923580586746532	0.982727549942016
Merged-chr15-38288552-2	chr15	38288052	38289052	+	787.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11348.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	5.35608655781819	5.24473499000287	5.97831917511702	5.59507507356228	5.3922765081985	5.62258338816593	-0.0350560108090132	0.926900892111644	0.983578869536024
Merged-chr5-67821040-3	chr5	67820528	67821528	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	26403.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	6.48593163582959	6.27283177323366	5.96973315965879	6.37897456998731	6.60623017441777	5.95485782615823	0.140649268909805	0.67165198132	0.910573176861295
Merged-chr1-37998062-4	chr1	37997567	37998567	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	57.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	6.99684043991681	7.14097225024868	7.23044644317433	7.20585130964409	7.28475113338061	7.54605378829248	0.33735154975359	0.172370022744018	0.550874360596261
Merged-chr19-7493202-2	chr19	7492702	7493702	+	671.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163505)	promoter-TSS (NM_001163505)	-838.0	NM_001163505	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	4.48477116453357	4.32038413702981	4.47959938323208	4.35496693249976	4.45862215493989	4.41930027956439	-0.0355814677893235	0.934886468508696	0.985727573165395
Merged-chr1-155418134-2	chr1	155417634	155418634	+	749.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-690.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	3.91130145580407	3.79147690888586	3.89806488496841	3.73244409836241	3.70499991731805	3.96651992042731	-0.218426392738245	0.676479137512389	0.912525597578286
Merged-chr8-69089510-4	chr8	69088997	69089997	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-275.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	7.65832454562634	8.02407957518949	7.677455960664	8.02574088183517	8.34316588688546	7.77051942001555	0.389660753333381	0.137275024327577	0.495032513835878
Merged-chr11-68853170-4	chr11	68852657	68853657	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-26.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	8.68957665227487	8.93441625696429	8.50567803941596	8.58242491903081	8.77569255402082	8.56630205569272	-0.109014381851157	0.626911563009235	0.892975730763041
Merged-chr12-117832361-4	chr12	117831863	117832863	+	907.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11498.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	2.78155532653098	2.70508514646277	2.74978421436689	2.68087977739172	2.59732726655227	2.82264203484542	-0.257043254083469	0.727194441739444	0.930115108449853
Merged-chr1-60652765-4	chr1	60652299	60653299	+	920.9464109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-86034.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	6.20496714227213	6.1429771122428	6.41889790512154	6.25493817711399	6.49043766159977	6.28946674837371	0.172311388172013	0.544122127428896	0.857551302506722
Merged-chr2-180041776-3	chr2	180041285	180042285	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178750)	promoter-TSS (NM_178750)	679.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	8.32692146214354	8.77176315665327	8.31482619977535	8.28895165952749	8.48653250677389	8.42361424325471	-0.127287647632708	0.590959060787587	0.877301111216348
Merged-chr6-72151491-2	chr6	72150991	72151991	+	661.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 6 of 6)	ID_B1|SINE|B4	-28294.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.39579976274075	4.36238334726798	4.64956158339717	4.17051979198766	4.20182784977379	4.2206893975846	-0.715374948533118	0.116497837332644	0.455679603553968
Merged-chr2-116932454-4	chr2	116931964	116932964	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32312.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.59190219017811	6.65789063215324	6.68285387456581	6.60325220182184	6.68327730591552	6.75697129726003	0.0589954064663481	0.816119943386548	0.956616423430214
Merged-chr2-91650107-4	chr2	91649595	91650595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	-23.0	NR_027372	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	7.0774710352587	7.29392362660131	7.11805540883235	7.35282065163863	7.50841017973236	6.98641770410823	0.214288047819918	0.41521320073898	0.786190894237809
Merged-chr5-140110494-4	chr5	140109920	140110920	+	963.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	64498.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	6.10738990046279	6.65797758322095	6.36503381076734	6.05505397116314	5.93461998886715	6.16719630111661	-0.589878528057611	0.057192102332848	0.308454786810449
Merged-chr11-77763286-4	chr11	77762823	77763823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13912.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	4.38840986209232	3.85294538224591	3.76708792476642	4.0112318582375	3.25112801374101	3.48543376309081	-1.27160740872319	0.0597689852557297	0.316494719580777
Merged-chr10-119051934-4	chr10	119051440	119052440	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1441.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	5.35818653501997	5.07509411213268	5.04423058926811	4.58212338149177	4.78290043197208	5.00475664872094	-0.820457061571328	0.0394315284519479	0.24660042235473
Merged-chr7-100846434-2	chr7	100845934	100846934	+	650.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177073, exon 11 of 11)	3' UTR (NM_177073, exon 11 of 11)	16979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	3.46724479915547	3.65391999153489	3.91117645691052	3.88836981365597	4.15898407816095	4.02745143838535	1.11886462619239	0.0410321115294182	0.25274161363627
Merged-chr4-130790375-4	chr4	130789860	130790860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2177.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	6.77350852758737	6.34589208642084	6.81070088776203	6.47143503839189	6.62926622328834	6.4262894014082	-0.217946604775209	0.448715781059606	0.807420585407372
Merged-chr11-84828385-4	chr11	84827906	84828906	+	932.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	597.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	6.95558111069567	6.98159710614701	6.73230512257537	7.01923345100792	7.33126531327517	6.70751253675529	0.240977417507746	0.395061200822956	0.772579826044138
Merged-chr9-14842596-4	chr9	14842106	14843106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17604.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	4.10214422946372	4.36184005059245	4.27928870401367	4.1496538884868	4.23544352623068	4.34649749552834	-0.0264827944166783	0.954567446831616	0.989606357454991
Merged-chr4-3684169-2	chr4	3683666	3684666	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	RLTR20D|LTR|ERVK	6045.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.04171270606502	6.99386954808098	7.23876655249228	7.50092541250532	7.65989661385749	7.92225579458123	0.903226023631983	0.000278930889842023	0.00655444266647135
Merged-chr11-117947162-1	chr11	117946662	117947662	+	1000.0	f0_c57.idr	Intergenic	Intergenic	22204.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	6.41414303203883	6.11388705124173	6.44229267951192	6.39811116323661	6.33726694173456	6.42970047504719	0.0990926062403236	0.72428318952398	0.929311721511015
Merged-chr15-99093455-4	chr15	99092955	99093955	+	990.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5727.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	2.86473683578341	2.91362265913727	2.94422794876796	2.86646571392285	2.8543197414241	3.29306533059919	0.495359355930156	0.485487800665741	0.827495041704636
Merged-chr4-84079101-3	chr4	84078602	84079602	+	673.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34223.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	4.34566353951648	4.75155840473547	4.56019663713172	3.40777619466259	3.35061269016708	3.63258261185972	-3.9866927179695	2.42529468052304e-09	2.4914713061861e-07
Merged-chr1-161896256-4	chr1	161895764	161896764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19582.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	6.1302180291967	6.45162852177629	5.91989079876272	6.2625085645628	6.68196505591233	5.90330919688845	0.235289961276773	0.50309826802925	0.836767423966136
Merged-chr8-120668222-4	chr8	120667735	120668735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001293559)	promoter-TSS (NM_001293559)	10.0	NM_009941	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	8.36171533852042	8.44133546415886	8.17540184715666	8.31258725884712	8.27580168967807	8.14931349067164	-0.119520518576781	0.574577652258282	0.870777333017021
Merged-chr6-146617136-2	chr6	146616640	146617640	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_026281, intron 6 of 11)	L1MC4|LINE|L1	17452.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	5.47568510613725	5.50698971576623	5.17591474967062	3.99175376966705	3.84883027740987	4.16469668711061	-3.72679558070447	6.90348466648644e-14	1.62726671991219e-11
Merged-chr10-26793204-2	chr10	26792704	26793704	+	607.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	20692.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	3.15440533638024	3.11571111914728	3.21326052966056	2.81134575130275	2.70636038203648	2.67289114222238	-2.23729957526133	0.00343016479104048	0.0465455237985806
Merged-chr14-122986779-4	chr14	122986425	122987425	+	931.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3642.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	3.18453794327466	3.43251828301571	3.67617259933991	3.71332810751499	3.79539822173693	3.79569710091977	1.17071407501158	0.0503197438394796	0.285432220696395
Merged-chr4-3660606-1	chr4	3660106	3661106	+	974.0	f1_c57bl6.idr	intron (NR_040643, intron 3 of 3)	L1_Mus2|LINE|L1	4100.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.93445135669206	5.7234852687151	5.96657920337507	5.53631318722287	5.53480082732264	5.6343577092905	-0.565231145740591	0.0725770040792154	0.353964442613174
Merged-chr11-76033981-4	chr11	76033483	76034483	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6201.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	2.38797869926032	2.32003663532806	2.34213571500814	2.45733311267695	2.33931491224584	2.54394906089168	0.605712020381679	0.458818478941361	1
Merged-chr5-62753007-4	chr5	62752520	62753520	+	909.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	13157.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.1717704178762	6.03125328972698	5.18371531259637	5.73542395990388	5.8408478110335	5.17285808944909	-0.44669784352743	0.303989548874343	0.700500218303923
Merged-chr16-33833918-4	chr16	33833431	33834431	+	725.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	4266.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.75970775792468	5.53269089239082	5.53432790566385	5.70588578412638	5.63323832134878	5.38200420188271	-0.0517660253253494	0.876251642920564	0.971251631220952
Merged-chr1-23843973-3	chr1	23843487	23844487	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_110972)	TTS (NR_110972)	65749.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	2.87258387239683	2.95844203325624	2.94328067984504	3.6356811938128	3.66450656896464	3.71648129301262	3.49822206961777	4.57039195860726e-06	0.000204899339489112
Merged-chr18-12644379-4	chr18	12643875	12644875	+	839.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 1 of 13)	CpG	842.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	3.84932147415668	3.6281005671834	3.58310340193997	4.25920952919903	4.05205192722976	3.71661507172832	1.04849825492615	0.0616238924643482	0.322096703023892
Merged-chr2-120559008-3	chr2	120558504	120559504	+	992.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	ORR1C2|LTR|ERVL-MaLR	4855.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	3.07023821309823	2.89879458728145	2.99714906446173	3.11002606259188	3.25364184387045	3.24558852395466	0.955444188931996	0.147944780752805	0.51321776824834
Merged-chr1-178492662-3	chr1	178492178	178493178	+	876.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36447.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	2.71799300805841	3.10127426859276	2.94125391584391	2.60026161122363	2.66241563404986	2.83471980523286	-1.20750504933982	0.114316117149447	0.451579153051663
Merged-chr2-150874736-4	chr2	150874239	150875239	+	987.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	29992.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.75249087977209	4.53814251403601	4.33466311334424	4.85533958277762	4.63497879388689	4.54334713384987	0.296391844251146	0.498848137935656	0.834149631434403
Merged-chr1-152830764-2	chr1	152830264	152831264	+	664.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_010877, intron 10 of 15)	intron (NM_010877, intron 10 of 15)	30611.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	2.82559453038585	2.91659620061704	3.31175880809626	2.94775412143464	2.88648664790473	3.11504883051201	-0.20676209624862	0.771778551510499	0.943614978016208
Merged-chr6-39725554-4	chr6	39725053	39726053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-90.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	7.83515810812859	7.26680464511374	7.05653719940575	7.51710470186583	6.98485539854791	7.3575284612267	-0.205163646493541	0.512262326737297	0.841860053306022
Merged-chr15-98153843-4	chr15	98153343	98154343	+	792.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-8141.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	2.80290158598858	2.92457657368379	2.92645663332871	2.63194918334982	2.44782058476973	2.99873259288516	-0.912616055161601	0.261142749278252	0.658699099125281
Merged-chr5-134629681-2	chr5	134629181	134630181	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_033561, intron 1 of 6)	intron (NM_033561, intron 1 of 6)	9728.0	NM_001312867	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	3.35581429591192	3.21852648527796	3.24398735466122	3.38353908305218	3.17575360443545	3.13654465914177	-0.153877884216281	0.806998045411683	0.954399610026228
Merged-chr17-35752349-2	chr17	35751807	35752807	+	954.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20143.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.38527806912758	4.85047940707666	5.22917874999827	6.24951943442076	5.9050641545741	5.79843828897353	1.54896103656119	2.62083814044953e-05	0.000918983143660029
Merged-chr19-41933384-4	chr19	41932887	41933887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164561)	promoter-TSS (NM_001164561)	-58.0	NM_001360679	74168.0	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding	5.77173957798266	6.02900985854135	6.09939544650475	6.10862355911926	6.05380768337326	5.98170881158297	0.144278829599596	0.629808376359881	0.894377678440432
Merged-chr16-56028678-4	chr16	56028214	56029214	+	884.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356449, intron 1 of 5)	intron (NM_001356449, intron 1 of 5)	1003.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	6.81653575977321	7.07010306040611	6.64780608188881	7.06566444392545	7.00024849086663	6.85230851681989	0.173348857111253	0.512034829609576	0.841654532746362
Merged-chr11-95832089-6	chr11	95831644	95832644	+	921.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_153104)	TTS (NM_153104)	7644.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.86049333511592	4.69316972695987	5.09810676876607	4.97652838051014	4.81514652439639	4.961107104884	0.0709023305065653	0.857751424547419	0.966785186918462
Merged-chr4-135314015-4	chr4	135313524	135314524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39190.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	8.89558893725279	8.67945044560002	8.02437006779202	8.29643654308459	8.59875295754543	8.04085019462631	-0.351102093419512	0.235935304552334	0.632261024837056
Merged-chr3-95509044-3	chr3	95508533	95509533	+	874.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007802, exon 8 of 8)	3' UTR (NM_007802, exon 8 of 8)	9823.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	4.89343651175216	4.92608441771594	4.69415476528449	4.51855752554531	4.48705515356462	4.63909463111929	-0.721372964362299	0.076741485291533	0.364990311982731
Merged-chr14-56903168-4	chr14	56902659	56903659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029498, exon 3 of 25)	exon (NM_029498, exon 3 of 25)	16316.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	4.25810423913433	4.19758978033769	4.55412111128237	4.21477338379826	4.26314118020094	4.61910863660168	0.0845420484332646	0.857989965573899	0.966785186918462
Merged-chr16-37580103-4	chr16	37579591	37580591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-62.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	4.91856971876953	5.04285599457779	5.16680395332352	5.54234492660294	5.7939511769847	5.42394206801838	1.12755781877122	0.00147423044502024	0.0244079697740299
Merged-chr7-126883810-2	chr7	126883310	126884310	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163774, intron 1 of 18)	intron (NM_001163774, intron 1 of 18)	1157.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	4.22097353522856	4.58603025515612	4.58540121495789	4.54999348701857	3.92890950583455	4.86503622953825	0.0670396724159568	0.900061316709173	0.976728292075907
Merged-chr11-24357534-3	chr11	24357012	24358012	+	943.64447	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124397.0	NR_045857	71316.0	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA	2.70441343151828	3.05629859339563	2.92533375775046	2.9397431665859	2.9149243831969	3.05691702340098	0.302725925642232	0.67105776111575	0.910289924720412
Merged-chr10-44068786-3	chr10	44068303	44069303	+	908.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63957.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	4.42420692217807	4.78169313490926	4.76033117210514	4.65267392173665	4.77498029387807	4.67088583159749	0.0975461499488716	0.816204784906719	0.956616423430214
Merged-chr5-110109389-2	chr5	110108918	110109918	+	890.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	-674.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	4.40735218431015	4.47935725147011	4.6713156343304	5.02577758348196	4.93089034457655	5.2177800501067	1.24144296888188	0.00219844500247967	0.0331812464658676
Merged-chr19-44423256-2	chr19	44422756	44423756	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15547.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.30590983733661	5.33017077271274	5.17796310826549	5.66106159991642	5.43786778708965	4.71549491772332	0.129723759678412	0.761063183138593	0.941126877639341
Merged-chr2-160620974-2	chr2	160620474	160621474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24923.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	7.86120224601969	8.01692530058785	8.00241871947584	7.43492774137673	7.74791752330652	7.78883697378773	-0.42328268808726	0.0677968407284726	0.34075744629023
Merged-chr6-35252624-4	chr6	35252106	35253106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-93.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	6.88816644394165	7.14059443679956	6.21956971258514	6.48450018733395	6.51883038631625	6.23562495977913	-0.62209146314991	0.0622177270431042	0.324099111917516
Merged-chr5-122050567-4	chr5	122050072	122051072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-721.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	5.98767472085749	5.71026602616149	5.84497984596416	5.28987389444878	5.29516965664356	5.22029376552004	-1.09631607567028	0.00092991396129953	0.0170132543737492
Merged-chr4-62348353-7	chr4	62347869	62348869	+	932.6904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	12227.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	4.95294330052472	5.40254046536965	5.2623482278971	5.19608304569064	4.82760857159185	5.49699899691819	-0.0603288014387077	0.883292768614238	0.973347392063704
Merged-chr11-21007723-2	chr11	21007223	21008223	+	560.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83601.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.48644307589534	4.4961532008092	4.9079887649013	4.73140104892461	4.42021927341557	4.76221202139893	0.0129506481440388	0.976663613174446	0.994723308989508
Merged-chr19-6908395-4	chr19	6907935	6908935	+	870.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_012021, intron 1 of 5)	intron (NM_012021, intron 1 of 5)	-1263.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	6.23819729680021	6.42861415344639	6.6530264440254	6.8562673878763	7.09361606215367	7.23862517288031	0.982139469553793	0.000386986530782794	0.00857076796736085
Merged-chr18-24074572-3	chr18	24074083	24075083	+	785.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47236.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	2.98869655940436	3.20457261630399	3.05128312300609	3.48683021731985	3.06097929274826	3.18664222694012	0.71442594051894	0.289350249594297	0.686970512975212
Merged-chr11-5524775-2	chr11	5524275	5525275	+	570.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271730, exon 6 of 6)	exon (NM_001271730, exon 6 of 6)	4134.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	3.88564077302535	3.6105503904562	4.1443119128751	3.89835985828486	3.76552162805914	3.89193746474885	-0.120683608045998	0.824738314944859	0.958596193929081
Merged-chr14-52014122-6	chr14	52013664	52014664	+	805.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027248, intron 1 of 4)	intron (NM_027248, intron 1 of 4)	394.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	4.72823711157542	4.63173693062866	4.72896104153501	4.76137712657378	4.51611316621974	4.75636922135006	-0.04776358819124	0.907023370809578	0.978868492078838
Merged-chr19-32951005-4	chr19	32950503	32951503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	193426.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	5.96448454697761	6.12413751679147	6.26927457422129	6.13840031827841	6.21591949939198	6.54074219326867	0.307053977217745	0.305375239881696	0.70154336825049
Merged-chr4-155622323-2	chr4	155621823	155622823	+	754.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177186, exon 9 of 9)	3' UTR (NM_177186, exon 9 of 9)	2432.0	NR_040441	100502734.0	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	-	predicted gene 16023	ncRNA	2.75628917534506	2.44347564831481	2.55869740666023	2.81941958545737	2.97516373999011	2.82905548962192	1.53711739643618	0.0550778386510026	0.301531468685179
Merged-chr5-43890398-3	chr5	43889941	43890941	+	645.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	21632.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	4.09430869866058	4.26133931745784	4.37103248218309	3.97357660955621	4.1550084879858	4.31203482525916	-0.256076270801748	0.593969586479158	0.878752268912353
Merged-chr9-22307041-2	chr9	22306541	22307541	+	876.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145612, intron 1 of 7)	intron (NM_145612, intron 1 of 7)	597.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	7.29661736093084	7.5908568528272	7.12256665681991	7.34517713857216	7.53178322263432	7.39467689629739	0.101224040701128	0.688966763123446	0.917235946766438
Merged-chr1-55086578-3	chr1	55086107	55087107	+	895.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356512, intron 2 of 11)	intron (NM_001356512, intron 2 of 11)	1325.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	5.77039074025144	5.77952645002333	5.57474627083644	5.61660538586361	5.66038806593337	5.2902149015261	-0.319052986826925	0.339579640654633	0.729313720985741
Merged-chr8-105546663-3	chr8	105546152	105547152	+	665.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	19412.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	3.5293947177103	3.484996446292	3.63622765403032	3.21806868667436	3.07014175045229	3.55480833305582	-1.0219353832443	0.108901024509583	0.440902902267097
Merged-chr9-119979110-3	chr9	119978615	119979615	+	771.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153287, intron 1 of 4)	L2|LINE|L2	3908.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	3.16523194311787	3.18097685286976	3.4998518853302	3.31446603441768	3.27562025197229	3.76171771037097	0.679388097140844	0.293193450302438	0.690196017357506
Merged-chr5-34542427-2	chr5	34541927	34542927	+	911.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-938.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	5.72470722593702	5.55790048999811	6.28799746562306	5.85046989849967	5.66735730578527	5.95068773293927	-0.10807947259714	0.762513877262277	0.941577447157182
Merged-chr15-100612651-2	chr15	100612163	100613163	+	857.7999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	2447.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	4.41107566328364	4.3129901744016	3.49978671009337	3.70402081709095	3.77295490835288	3.76163231109567	-1.17744542849644	0.0586565770141345	0.313266781783832
Merged-chr15-72808432-2	chr15	72807932	72808932	+	601.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1892.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.87058140414458	2.67988350459105	2.78207026492083	2.60777965924209	2.60103913894193	2.60339408183373	-0.975239651362103	0.197336347418597	1
Merged-chr3-133549003-7	chr3	133548534	133549534	+	853.119019	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4644.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.09773078030114	5.24595178726493	5.45091451373107	5.21658356496446	5.48079938017851	5.13895811164317	0.0705150253767831	0.8474654358804	0.964318271116593
Merged-chr10-51405340-4	chr10	51404862	51405862	+	915.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-75250.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	2.776291909472	2.7916160800275	2.54474842994183	2.9126204680084	2.81026652856331	2.94198216942169	0.883577096329949	0.244548272961302	0.641966459162426
Merged-chr17-81480547-4	chr17	81480050	81481050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257837.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.63341745509005	5.5138797701356	5.41640255778166	5.4785385757411	5.53092981816487	5.28716768999927	-0.160707435716872	0.631675859982216	0.89524721007624
Merged-chr11-31902466-4	chr11	31901984	31902984	+	971.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	31544.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.71874864074776	5.00181115151461	5.11711995716721	5.1923956975959	4.88527796512544	5.01254495173927	0.180659213340371	0.64628921713663	0.900976246381167
Merged-chr15-83122234-4	chr15	83121757	83122757	+	906.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358061, intron 1 of 3)	intron (NM_001358061, intron 1 of 3)	544.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	6.56164499697426	6.43807801410589	6.53959203290786	6.23961453289038	6.4367998083583	6.34364830075623	-0.270352222936857	0.315237368069845	0.709642964607719
Merged-chr7-44005089-4	chr7	44004572	44005572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7606.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	5.26739401110304	5.43209803125421	5.35883032429526	4.38921073128771	4.51479124327254	4.42649414354685	-2.04007058699145	5.08895084573732e-07	2.97988333548283e-05
Merged-chr11-55113680-4	chr11	55113178	55114178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010299)	TTS (NM_010299)	15693.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	6.8455844514292	6.53459823281809	6.42886143528833	6.60628483033166	6.51041440753459	6.5966291803607	-0.0866200601887709	0.753283840570306	0.938549578325581
Merged-chr14-78527074-2	chr14	78526574	78527574	+	635.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164503, intron 1 of 11)	intron (NM_001164503, intron 1 of 11)	-4372.0	NM_001346784	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	3.06881978115578	2.95412159247987	3.37593458139657	2.90673300939377	3.03975055065925	3.49501059538078	0.108598869287504	0.879636929866193	0.97219374767077
Merged-chr4-8911696-4	chr4	8911243	8912243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	160419.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	7.78686083258424	7.7389702885737	7.75063712774877	8.18019838581412	8.21368263262135	7.9925279331084	0.540331813021328	0.0115394560925658	0.111247255538202
Merged-chr18-32379000-2	chr18	32378497	32379497	+	582.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045403)	promoter-TSS (NR_045403)	-713.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	3.00656576490116	3.06072861381243	3.18015232130875	2.83552414827638	2.84458689552832	2.90709128511832	-1.0755260576053	0.119511431084196	0.462096057511792
Merged-chr16-97536831-3	chr16	97536332	97537332	+	721.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013606, intron 1 of 13)	RMER17C|LTR|ERVK	749.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	5.88723165326331	5.86197819902578	5.77118791982427	5.76057079836503	5.57407811497963	5.61746030369443	-0.351119056009069	0.25618738305026	0.653209528983453
Merged-chr8-84911692-1	chr8	84911192	84912192	+	542.0	f1_balb.idr	TTS (NM_019945)	TTS (NM_019945)	-1643.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	2.88902887217333	2.78093978788077	2.86416954883053	2.92371892809307	2.70105634114708	2.99631973507642	0.144324454055364	0.839922553585198	0.962784121274377
Merged-chr18-47998148-3	chr18	47997641	47998641	+	895.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	-47194.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	3.16928295964806	3.31593529872182	3.35088695105084	3.31914055611841	3.26644386199403	3.47507076400477	0.288761474672231	0.636758293257812	0.89723915288953
Merged-chr7-43994989-4	chr7	43994503	43995503	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010640)	promoter-TSS (NM_010640)	-874.0	NM_010640	16613.0	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	3.75494266070798	3.82984491834803	3.55330356519822	3.28963923994026	3.27880823705237	3.33713903237526	-1.61005761182274	0.0073402487675551	0.0808972362088812
Merged-chr5-74260562-3	chr5	74260070	74261070	+	994.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	65244.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.40658811049834	3.59851815703673	3.6445991615831	2.92928038711187	2.80778944998306	3.0534444390918	-3.07388014505849	5.33856620463677e-05	0.00167059577568791
Merged-chr18-70472457-4	chr18	70471955	70472955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	1.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	5.94130180960038	5.87477647672234	5.74372158469384	6.46530130355032	6.36947440377673	5.72126478755079	0.645988541290072	0.0565495122531569	0.30663876282572
Merged-chr2-91727165-4	chr2	91726603	91727603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3035.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	5.73130843405969	5.7381572889194	5.9506309237971	5.8596808616322	5.82931567639714	5.84683719916459	0.0766841327277125	0.800705263891579	0.952671532106821
Merged-chr12-10390793-4	chr12	10390281	10391281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023697)	promoter-TSS (NM_023697)	1.0	NM_023697	105014.0	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	7.5299430171264	7.76104196495	7.38449184843715	7.42815825968657	7.46985294016544	7.15359241515221	-0.306002052983121	0.220096950949249	0.614507907782981
Merged-chr15-102617818-4	chr15	102617289	102618289	+	931.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	7675.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	4.93972673223465	5.15718825390066	5.49210312382482	5.58356381311991	5.72928895431926	5.49828736450286	0.801243403327774	0.0270375546514108	0.195799899689694
Merged-chr8-84068836-4	chr8	84068330	84069330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1994.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	7.21430727078782	7.01363651099183	7.18875994146777	6.89953923777233	7.08826878625031	6.9064017634609	-0.251853129929357	0.3065566941639	0.702776322679904
Merged-chr5-30961525-7	chr5	30961016	30962016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	-1189.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	7.64056560393445	7.72713017940827	7.66521930518361	7.77414103623781	7.95657710567737	7.99740714721513	0.33489002402835	0.125642916815843	0.474234330796673
Merged-chr17-56608736-2	chr17	56608236	56609236	+	714.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_153152, intron 2 of 3)	intron (NM_153152, intron 2 of 3)	1035.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	5.80925153914848	5.88220635660866	5.93017178666558	5.73631979208057	5.87344734902603	6.03536050827241	0.0173463512507243	0.954469240382739	0.989606357454991
Merged-chr9-61369031-3	chr9	61368526	61369526	+	908.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3340.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.83531771936118	3.66861699826132	3.86616437364838	4.06085961198707	3.75771460297192	3.55530078855413	0.0723371096592816	0.896910348990152	0.97587199430405
Merged-chr16-31926785-4	chr16	31926299	31927299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MERV1_LTR|LTR|ERV1	-7052.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	6.88701685252203	6.75088115396159	6.29235085158501	6.80271824859178	7.1713281686782	6.61026093282675	0.333832653549962	0.283755206204552	0.681452732636412
Merged-chr14-121997017-4	chr14	121996519	121997519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-31826.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	6.47673202011106	6.3613729090617	6.20471891351516	6.28912825741281	6.21536441250622	6.20131599336199	-0.204504620574434	0.461304832363077	0.814992635038861
Merged-chr14-22847487-2	chr14	22846987	22847987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	247084.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	4.37727993891577	4.59829765744943	4.44364974975334	4.3416480254154	3.85162369050639	4.19880396398419	-0.909358302388164	0.0627508253450912	0.325745253934391
Merged-chr18-80152726-2	chr18	80152226	80153226	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1244.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	3.86109714594775	3.85659524921394	3.7691608062916	4.08237065032913	3.68482012634113	3.94106430879656	0.238943422571398	0.652884262736644	0.903027303548785
Merged-chr1-155159213-3	chr1	155158730	155159730	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021433, intron 1 of 7)	CpG	527.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	6.56902455411717	6.50529720045632	6.21673075005582	6.64181080641196	6.06699218587327	5.91941557121965	-0.311261249293877	0.350974293418332	0.738927106247438
Merged-chr11-55455181-2	chr11	55454681	55455681	+	808.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	6027.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	4.29837666969374	3.89454068179139	4.10610562418151	3.87919416977699	3.80601565464328	3.98476673423286	-0.673321956984131	0.190075856494943	0.576216758852106
Merged-chr6-116123041-4	chr6	116122520	116123520	+	986.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	70354.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	6.64521393577363	6.55314727128821	6.22517729330698	6.04571625927365	6.41044582176278	6.15482912378185	-0.449426225717944	0.13469567219466	0.490557074975851
Merged-chr13-101842096-4	chr13	101841554	101842554	+	878.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73837.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.94292356637973	6.96247141055939	7.16691998846488	7.09639555221127	7.39384013551853	6.96415721140395	0.23060836971331	0.376048887987721	0.758951282467405
Merged-chr10-117435599-4	chr10	117435079	117436079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11856.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.96962351846726	7.03230275123613	6.50385591436411	6.77698228603051	6.67051595628991	6.13310470664809	-0.465197674757604	0.143967137028237	0.506585086389207
Merged-chr1-191023334-4	chr1	191022841	191023841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081259, intron 1 of 9)	L2b|LINE|L2	-2010.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	5.39197327405037	5.1155538725051	5.41837204997202	5.51610285600178	5.40910717033078	5.36079408749339	0.24069193495263	0.487032264332134	0.828231456470534
Merged-chr2-155472894-4	chr2	155472397	155473397	+	979.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32114.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	6.04673607393148	6.03116078244468	6.57550116075085	6.16523661695162	6.22184298384415	6.20754813388025	-0.0516709489644729	0.868281724413323	0.969642939011354
Merged-chr10-21826084-4	chr10	21825578	21826578	+	768.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56106.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	4.26919885817334	4.42101510241759	4.66922646342026	4.53905476141551	4.59198658420418	4.69685149488921	0.383489758058741	0.378104704962125	0.760495811314425
Merged-chr10-117793633-2	chr10	117793133	117794133	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-928.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	4.62272182475218	4.90145393435951	4.65585602448059	4.35706731946572	4.91213469087341	4.72235566203975	-0.103440175579459	0.815722390049205	0.956465653447018
Merged-chr2-84802271-2	chr2	84801771	84802771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	3443.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	2.54136750473	2.70284873354651	2.77820310971304	2.54618162560728	2.56104505486889	2.96493238464121	0.127666033062308	0.870846843933017	0.970222087171093
Merged-chr4-54526291-1	chr4	54525791	54526791	+	683.0	f0_balb.idr	Intergenic	Intergenic	-421654.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.23862058151797	2.34310775680115	2.68850650443173	2.18018955853816	2.1376362017693	2.27050034259648	-1.63634890438818	0.0733170858736973	1
Merged-chr11-102925189-4	chr11	102924686	102925686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197959)	promoter-TSS (NM_197959)	-62.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	4.58413617559915	4.4354365122596	4.41510336415885	4.88607420687114	4.90492513737816	4.74019424724044	0.866029045064662	0.0347919222250917	0.22876066886649
Merged-chr2-73912439-2	chr2	73911939	73912939	+	913.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-1113.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	3.44677682561545	3.60790765967465	3.82041441205585	3.68718929609898	3.73052394970146	3.68970049978279	0.266209459899768	0.63297229318306	0.895817001600499
Merged-chr6-51545412-4	chr6	51544899	51545899	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	106.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	7.7187165720363	7.28530361923313	7.13929054902567	7.77924510051488	7.66495368918735	7.42540377947474	0.323199513181396	0.233321804342636	0.629682827928185
Merged-chr16-14372774-2	chr16	14372274	14373274	+	723.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	11216.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.7174214146455	3.77644855638212	3.95532779808684	3.91878684783026	3.69073362235927	4.02334835312115	0.197833917481706	0.709291183580444	0.92394290281888
Merged-chr6-16855244-3	chr6	16854751	16855751	+	943.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	43190.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	5.0269605953058	5.10005522783521	4.79598481795918	4.80889851840795	4.85840690165282	4.56446071616031	-0.507215274731682	0.208177354996778	0.599041414336639
Merged-chr18-84355445-4	chr18	84354942	84355942	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234062.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	4.61736340525928	4.65827936576327	4.8294039044023	4.61755470020081	4.47843409103348	4.50352527740322	-0.396741467812052	0.339448370200832	0.72927498031683
Merged-chr5-99578908-4	chr5	99578405	99579405	+	940.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	150155.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.71102807039174	3.83517634004659	3.73451686030138	3.7333555387899	3.47067204217433	3.59089508695151	-0.558990734952674	0.3117476827865	0.706711311743954
Merged-chr10-127535979-4	chr10	127535483	127536483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1424.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.94470532092068	3.66266241507786	3.56319617468529	3.93008530284722	3.95233459076406	3.8564704323805	0.551816809601066	0.310456693459203	0.705829393476587
Merged-chr11-48827277-2	chr11	48826777	48827777	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	1139.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	2.91625973179005	2.77557943576987	3.01153150231323	2.90898128133895	2.7258332703255	3.02608729396552	-0.0689373346606393	0.922945679748708	0.982629432513311
Merged-chr14-21500673-4	chr14	21500176	21501176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017479, intron 1 of 16)	CpG	891.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	7.96720317338015	7.90759031765447	7.76911487565123	8.05813044888998	7.87163183708828	7.48567397477334	-0.0750778782050433	0.763533275451741	0.941793063578371
Merged-chr2-169703158-4	chr2	169702640	169703640	+	923.866699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080455, intron 1 of 1)	B1F|SINE|Alu	69494.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	3.49609780161057	3.32069255529941	3.33406267161801	3.81361870664658	3.86077027731896	3.79723208663181	1.55361846195017	0.00696260312373475	0.0778165588609431
Merged-chr2-160361673-4	chr2	160361195	160362195	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5370.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.81485305287501	5.59600438578298	5.81717472371013	5.93204635536872	5.85217415852109	5.72422424609516	0.182172117040841	0.557891712313706	0.86443214373182
Merged-chr18-20801764-4	chr18	20801269	20802269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55365.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.83289850712059	5.90016625981685	6.05454504740871	5.48176952854969	5.61514190687093	5.51989163796827	-0.694758689376336	0.027162344626996	0.196308064865786
Merged-chr3-65187635-1	chr3	65187135	65188135	+	547.0	f1_balb.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-468.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	4.66662325512312	4.46491476881003	4.4740355113384	4.66485661451167	4.6341288618813	4.74484293977274	0.32728269084476	0.430854014733312	0.796606987332891
Merged-chr6-113306614-4	chr6	113306140	113307140	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282126)	promoter-TSS (NM_001282126)	-497.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	7.10809698636194	7.44643854513216	6.94633013204134	7.42652650169195	7.37934284766781	7.11593091899172	0.187468338395038	0.4826704119701	0.825747658710697
Merged-chr8-109609222-2	chr8	109608722	109609722	+	630.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020046)	promoter-TSS (NM_020046)	-549.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	6.22562781041228	6.95579075256833	6.88732608234581	6.69273900876755	6.93232427209773	6.73997371488715	0.104022606648731	0.739713140294278	0.934245371298156
Merged-chr17-64609124-4	chr17	64608648	64609648	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	7499.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	3.25332563836658	3.22731304704396	3.39343398214387	3.22593583999752	3.30078224766107	3.41002482519303	0.0920622770209636	0.880092082673864	0.972428884633923
Merged-chr4-141645256-2	chr4	141644748	141645748	+	794.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	MIR3|SINE|MIR	18867.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	5.61547322888206	5.78675912009775	5.58633204876147	5.94038928538619	6.07246034235249	6.2367838555409	0.728188841298746	0.0185649117943164	0.153905467827187
Merged-chr4-106980744-3	chr4	106980277	106981277	+	902.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	57592.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	4.06898599843384	4.08929325717023	4.386083616219	4.41111243952621	4.2536171173379	4.45249766502058	0.515675705856963	0.26873254586342	0.665953881361316
Merged-chr18-67610938-4	chr18	67610431	67611431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	30424.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	4.96848451569018	4.64588835751457	4.76546480534728	4.91361413727738	4.31474631220426	4.86840428008941	-0.189366800533455	0.674658395663683	0.911852710156386
Merged-chr11-60775108-4	chr11	60774616	60775616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2249.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	6.42103623222774	6.14220812925041	6.76372571124756	6.34157361011187	6.52717907225161	6.54346839945859	0.028339445603665	0.925342661139743	0.983166193538686
Merged-chr8-70551993-3	chr8	70551474	70552474	+	998.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	12299.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	5.2501732449625	5.51840949929291	5.09026379881916	4.15014504781726	4.06936236611632	4.18344638076618	-2.91219256620287	1.74970488789294e-10	2.21597327719628e-08
Merged-chr7-142390387-4	chr7	142389855	142390855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-2485.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	6.77837039825575	6.65801421487299	7.1509012894794	6.71374276211988	6.82544157789667	6.98814850517447	-0.040615223367906	0.883247167506845	0.973347392063704
Merged-chr9-47655068-3	chr9	47654567	47655567	+	827.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	124715.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	5.28014503604826	5.38690189060833	4.89576063823168	4.50258453980846	4.57502568214349	4.39366399653567	-1.61069547843791	0.000133686279853857	0.00362219732141965
Merged-chr3-79161593-3	chr3	79161118	79162118	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15743.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.70079178604715	7.98933952158849	7.13563505266227	7.36439425037826	7.47671470074717	6.84919340034542	-0.581397744548586	0.0691243780967494	0.343993860226086
Merged-chr4-141993314-2	chr4	141992814	141993814	+	677.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10322.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	2.84749130952485	2.73315313187511	3.41105728896351	2.94401494021758	2.68624515045838	3.00553096327627	-0.657142048932493	0.396623154850515	0.773701467493871
Merged-chr15-34043267-4	chr15	34042776	34043776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39443.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.64362783405974	3.5530008545448	3.5861506009448	3.67272562491295	3.71415314184238	4.00133719519177	0.677167853993289	0.219099411764678	0.613224645184221
Merged-chr13-5870516-4	chr13	5870019	5871019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011803)	TTS (NM_011803)	9030.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.56636295641244	6.10575578473706	6.05483473524551	5.94648867432723	5.89872672853881	6.02394934086217	-0.543017360650054	0.0836401617930093	0.382728254645442
Merged-chr2-106003285-4	chr2	106002778	106003778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033993, exon 1 of 4)	non-coding (NR_033993, exon 1 of 4)	271.0	NM_026992	99349.0	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	5.92815045267999	5.6710478697759	5.80775104498274	5.6881695396624	5.42210152088199	5.21825362411917	-0.633710841860815	0.0640248960382875	0.32982664499337
Merged-chr6-38982304-4	chr6	38981805	38982805	+	987.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 4 of 12)	MTD|LTR|ERVL-MaLR	63319.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.00885627153427	6.76520733071228	6.50665396986228	6.92533073412829	7.18623435687631	6.56659710384586	0.223169191446156	0.460329034409046	0.814456150356331
Merged-chr8-75090599-2	chr8	75090099	75091099	+	886.125	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3019.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	5.87192743805653	5.64653165774139	5.87195467118266	5.64548767844482	5.63330854614745	5.86202050899717	-0.15880091262395	0.615455955454462	0.887982853452426
Merged-chr16-11323519-4	chr16	11323024	11324024	+	864.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	620.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.402925141039	6.61561773082465	6.67324488607755	6.45715275922393	6.2550046002981	6.29167096089442	-0.372193001237151	0.176141971643898	0.556326482313359
Merged-chr1-64304217-4	chr1	64303730	64304730	+	872.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182841.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.87601486872834	6.94237037003511	7.03406328497273	6.91663151478994	6.79518307715065	6.97358512129848	-0.0876020575822604	0.72152046856158	0.928503945058713
Merged-chr8-41319218-3	chr8	41318746	41319746	+	734.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023662, intron 29 of 37)	intron (NM_023662, intron 29 of 37)	55451.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	2.8225137092284	3.02678985560611	3.03710228045609	3.41216922223687	3.29378861826977	3.28847473783164	1.64194735825642	0.0149270187576452	0.13220302041364
Merged-chr4-62480615-5	chr4	62480110	62481110	+	958.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	543.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	3.5068372549586	3.56263014828823	3.31930740759712	3.56628927741321	3.5210570921791	3.50797195699671	0.213172482776527	0.7139201713389	0.925625529656531
Merged-chr18-39572353-3	chr18	39571870	39572870	+	976.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85125.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.00643166814219	2.8666455111416	3.0171611273388	2.92611042702667	2.86784192770769	3.14562977940952	0.0735073813559483	0.91476066586199	0.98093269064294
Merged-chr14-47445570-3	chr14	47445071	47446071	+	848.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26990.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	5.1330145132429	4.71830671721279	4.61129617608736	4.75091251969008	4.7796519861844	4.54663798759115	-0.335269258672081	0.436620120022256	0.799551248563286
Merged-chr5-151367841-2	chr5	151367341	151368341	+	738.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-834.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	5.90429284084764	6.31561035223606	6.27570332414915	6.02909616287932	6.38940380742045	6.42812384702619	0.196967107499827	0.526722202062956	0.849629836409305
Merged-chr11-121804840-1	chr11	121804340	121805340	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-25378.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	8.21375344152469	8.02314772062603	8.08778957913288	7.94327681678706	7.99853870676131	7.72308469296804	-0.299921709338295	0.175780739522546	0.555778951622549
Merged-chr10-80737508-2	chr10	80737008	80738008	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	MLT1D|LTR|ERVL-MaLR	4767.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	3.02848120860223	3.08606468207753	3.47925403792682	3.36759261791688	3.18763481173554	3.49818204494951	0.592878030275842	0.368830869243834	0.753638793969867
Merged-chr18-65497653-3	chr18	65497200	65498200	+	956.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66703.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.13087917421971	5.90426006840894	6.20050714034606	4.97493410895978	4.737927497722	5.15194231636809	-2.20708050298153	5.14530125455755e-10	5.89711056183505e-08
Merged-chr4-141662506-2	chr4	141662006	141663006	+	862.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	1609.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.84035117273199	7.17638122994668	6.78793393001821	7.13985580154748	7.18573169355304	6.96628498225521	0.229249652806697	0.381326633779731	0.763080052613635
Merged-chr12-51939862-4	chr12	51939348	51940348	+	950.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177171, intron 11 of 35)	intron (NM_177171, intron 11 of 35)	31473.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	6.77819713883736	6.71678102887811	6.38556144028197	6.56707567398778	6.88452361361722	6.40576425369277	0.000661072982633835	0.998202225260076	0.999590080903912
Merged-chr12-12313667-4	chr12	12313185	12314185	+	844.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	51546.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.68741178753235	3.46361662389513	3.78599877960636	3.80326429062304	3.64624334933117	3.7031318647445	0.242320558353965	0.661881011011089	0.906495637422278
Merged-chr1-156467824-4	chr1	156467334	156468334	+	961.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	6494.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	6.87333911642621	7.10672351038438	6.88122024685947	7.16988228067583	7.35494372392702	6.73588284214618	0.249256194228877	0.375522472853242	0.758788065572183
Merged-chr5-86066324-3	chr5	86065825	86066825	+	847.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-742.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	6.42173897707702	6.87543345807177	6.57936869289475	6.53932661068511	6.92565263515316	6.2964677493619	-0.0247675070839019	0.937248942637821	0.986057836872162
Merged-chr11-5444975-4	chr11	5444464	5445464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-117.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	6.52033587937526	6.5802387673963	6.87891780021552	6.80290840028287	6.82677288328862	6.90946983268924	0.291163011658521	0.267262357315276	0.664581053738824
Merged-chr13-55535880-2	chr13	55535380	55536380	+	655.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134059, intron 3 of 16)	intron (NM_134059, intron 3 of 16)	778.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	2.47458727906179	2.48094355555307	2.80755538189564	2.79671764236429	2.56290606663158	2.76127712890945	0.650446745080791	0.408907699588001	0.782403749794615
Merged-chr2-24385102-6	chr2	24384672	24385672	+	909.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177611)	promoter-TSS (NM_177611)	-160.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.13347612894849	6.16893424392359	6.21014760552368	6.40015535101518	6.5203045747956	6.38870136360803	0.454435124148585	0.0936951782018594	0.407750438693531
Merged-chr14-55678673-2	chr14	55678173	55679173	+	615.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_177992)	TTS (NM_177992)	3144.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	3.84937727508848	4.11361525085513	4.61890701194775	4.12613086811694	3.83304476678749	4.7505077645747	0.162419347759824	0.784800258235935	0.947770123968912
Merged-chr2-166710066-4	chr2	166709561	166710561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	3771.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	7.26261765770204	6.88164039324844	7.13224276992681	7.24503553388761	7.45540428028189	6.97582266210102	0.223917674244704	0.407123280127453	0.781312613790187
Merged-chr14-56571923-4	chr14	56571422	56572422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001014996)	promoter-TSS (NM_001014996)	-76.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	4.6467295184691	4.6667743781818	4.78718814239362	4.58238477409994	4.31767182006383	4.62460967686694	-0.468048626313652	0.269737865384538	0.66686579973798
Merged-chr1-162565175-4	chr1	162564667	162565667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-5348.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	6.47038519899625	6.16662531447976	6.3176073423629	6.21979172588719	6.38161527770068	6.10494284051555	-0.124044242540447	0.668164491479546	0.908976375106763
Merged-chr11-100619144-4	chr11	100618661	100619661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 1 of 13)	CpG	1007.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	8.43541777996586	8.08797853644198	8.15507674804141	8.27422782145812	8.36506808597732	8.12835971526189	0.0361176657485058	0.873163866261748	0.970397726762468
Merged-chr6-124806746-2	chr6	124806246	124807246	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1915.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	7.03034462431572	7.23176351292503	7.06561511789087	6.98270142827112	7.32532288149476	7.04405527394655	0.0294239938191578	0.907752158699037	0.979037236663477
Merged-chr8-11452781-4	chr8	11452280	11453280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25149.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.33044379832139	8.41200204223684	7.97757176252012	8.18560037201103	8.36770532035096	7.91278031288065	-0.117348488156489	0.636039420790116	0.896903216992966
Merged-chr4-136891988-6	chr4	136891547	136892547	+	923.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007574, intron 2 of 2)	MIRb|SINE|MIR	867.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	7.07955729617894	7.45396330348462	7.59580705514483	7.78439508562514	7.8334658759267	7.74149556063292	0.581191317229619	0.0193872889819364	0.15816683155016
Merged-chr5-30650909-4	chr5	30650385	30651385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2946.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	7.88510787368429	8.15778529142737	7.78898735209477	7.73182744607137	7.83023337868843	7.56682137131216	-0.342407764651551	0.147943159186493	0.51321776824834
Merged-chr12-44266663-4	chr12	44266162	44267162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2492.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	3.79849725714818	4.16477322603679	3.87455648081717	4.06170810991578	4.07634755748515	4.09371458642228	0.335372472128335	0.509301984647367	0.84026772146894
Merged-chr19-5841066-2	chr19	5840566	5841566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4412.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	6.37788563553031	5.65781710041205	5.99066709922762	5.76244372643367	5.42252794233186	5.96132023999713	-0.56820582109498	0.123084425800921	0.469375521223989
Merged-chr17-45564414-4	chr17	45563919	45564919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357105, intron 1 of 3)	intron (NM_001357105, intron 1 of 3)	483.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	6.98409792336705	6.84701463063193	7.114171600217	6.68264657075481	6.83107555290789	6.99581367073318	-0.219803783810834	0.393195246563217	0.771515439837752
Merged-chr4-125144393-4	chr4	125143904	125144904	+	932.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16523.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	5.04143589476115	5.26241389167558	5.78544794806097	5.05520965145172	5.11165662508132	5.11351063320244	-0.595950001203389	0.136194095753843	0.493146752362964
Merged-chr7-102250230-3	chr7	102249745	102250745	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-127.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	8.16644504113421	8.20706678483685	8.30948370246254	8.25096145106929	8.38611944313416	8.34145035049912	0.142786434231887	0.486243587571983	0.82774255514171
Merged-chr11-120957959-4	chr11	120957453	120958453	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030696, exon 6 of 6)	exon (NM_030696, exon 6 of 6)	8886.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	4.11991281027557	4.32583287221467	4.68915383291926	4.65464380868597	4.54906856108144	4.67982653358401	0.595754120814265	0.192616996841967	0.579627321732537
Merged-chr15-73727579-1	chr15	73727079	73728079	+	801.0	f0_balb.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	2649.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	3.97317135854821	3.66779991826236	3.79326904034416	4.08618052518457	3.74209856488504	3.70188737834411	0.119694777042531	0.827350315790211	0.959445425237295
Merged-chr14-122107052-4	chr14	122106576	122107576	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	-6.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	8.53638513976016	8.8979531933983	8.38921944913183	8.42534212830594	8.5960801594839	8.43296168462	-0.197310527066703	0.39992567802993	0.776248940201881
Merged-chr13-103921033-4	chr13	103920528	103921528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-442.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	8.4689689843386	7.78913328900563	7.72663979562538	8.27620346965481	7.22443810778346	7.75644312881866	-0.302465377226999	0.573055575228002	0.869947175774374
Merged-chr11-11559475-1	chr11	11558975	11559975	+	618.0	f0_balb.idr	Intergenic	Intergenic	68363.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	3.4116364524856	3.55032809138465	3.36567370534329	3.58840488619684	3.46862139808256	3.49439417239606	0.251178136051804	0.665201167482625	0.907762144972922
Merged-chr11-78095109-1	chr11	78094609	78095609	+	544.0	f0_balb.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	436.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	5.71735586356905	5.71904416915721	5.46471813671245	5.71845512718093	5.70835685869139	5.80484507641848	0.168088414134986	0.595881233780543	0.879742965115467
Merged-chr4-142019437-4	chr4	142018966	142019966	+	863.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	1568.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	6.58715549067933	6.9487114509709	6.80140434049926	7.13443408903948	6.75808843315149	6.40496060102227	0.0308992069083282	0.919586580969975	0.982040931170308
Merged-chr9-120583464-2	chr9	120582964	120583964	+	726.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	6133.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.60232647862653	4.54593804945837	4.76349864915149	4.5941863745335	4.60136954525248	4.63715902063954	-0.0557630045300098	0.892055393313156	0.974942585822634
Merged-chr4-132801621-2	chr4	132801121	132802121	+	839.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5257.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	5.79799584921936	5.87170266556206	5.78369339021798	5.91454487875562	6.32522116789915	6.23122703098548	0.609492216121934	0.0465692967153803	0.273036784180761
Merged-chr3-69634190-4	chr3	69633688	69634688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35228.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	7.35106082560645	7.43613997595852	7.35104086158072	7.27919348535207	7.41565814138171	7.12116648081496	-0.141097963775306	0.550127885704686	0.86061104953497
Merged-chr5-105877497-2	chr5	105876997	105877997	+	898.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030777, intron 1 of 9)	intron (NR_030777, intron 1 of 9)	929.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	6.12563933161228	6.42358584143655	5.95452216465543	6.07810261222045	5.81429788696534	5.7848175853288	-0.502462949071832	0.112711160016332	0.448425976142792
Merged-chr1-92972188-4	chr1	92971700	92972700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-919.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	7.31738694845987	7.07048601260692	7.30398130167577	6.888089274985	6.91961327077536	7.0922119538998	-0.405798935867105	0.100011933635995	0.421843317698826
Merged-chr7-104369940-4	chr7	104369451	104370451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11305.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	6.79637107431067	6.91699222518565	6.80544482611195	6.97072402117883	7.30411555462931	7.08780950499736	0.44506974351616	0.0781632625801383	0.369198952813814
Merged-chr13-99353327-4	chr13	99352819	99353819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	8533.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	4.84061112972112	5.10563082334927	4.81907731239788	5.0099623972499	5.11474350062355	4.88559938032118	0.169432683072381	0.661582495718322	0.906493864324557
Merged-chr11-62789321-3	chr11	62788804	62789804	+	866.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138949, intron 1 of 5)	intron (NM_138949, intron 1 of 5)	113.0	NM_138949	192651.0	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	3.06019708224366	3.13777959167829	3.13088578632598	2.93888629346669	3.08905295790334	2.90068091774187	-0.565091579219374	0.403805072276317	0.779031412271333
Merged-chr4-152026757-2	chr4	152026257	152027257	+	782.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133879, exon 2 of 11)	exon (NM_133879, exon 2 of 11)	914.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	4.0150791658588	4.05481406459173	3.96886352057366	4.15067270772734	4.20813858242378	4.48146785936593	0.742445904155103	0.123470573925358	0.470258594552167
Merged-chr3-85601532-2	chr3	85601032	85602032	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	27403.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.31713883148697	3.231389088389	3.34592344516518	3.35390571208899	3.08567934892645	3.52264240205482	0.109812981398986	0.862498118191486	0.96807605498315
Merged-chr1-183510950-4	chr1	183510444	183511444	+	949.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91696.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	3.63972848119057	3.83507851907626	3.62963551012905	3.2655150995576	3.32532621007452	3.54043443502603	-1.23183624559724	0.0375820778690826	0.239663514357037
Merged-chr13-104286499-3	chr13	104285998	104286998	+	739.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1337.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	7.60706088673148	7.40677104336468	6.94967805644416	7.5656576417361	7.87383162559766	7.30492355907085	0.367290296770152	0.209756804564412	0.601570989687028
Merged-chr15-66818393-4	chr15	66817812	66818812	+	980.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	13517.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	5.6403947377896	5.80704366919979	5.97698365120301	5.44335061286542	5.36650492314379	5.95110207514527	-0.385949702074288	0.275992123812898	0.673374168373905
Merged-chr1-125441307-2	chr1	125440807	125441807	+	770.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5580.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.28030143513627	6.29166869322762	6.29511593788435	6.50646322712985	6.41308145258515	6.65472959509514	0.379041218802412	0.159668265126177	0.531980339738086
Merged-chr18-38576188-4	chr18	38575678	38576678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25090.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	4.36353837022847	4.3063443074687	4.1522965603562	4.1049230578582	3.75038243673865	4.07750458575277	-0.871469352812204	0.080861972942594	0.376278833658114
Merged-chr13-111967780-2	chr13	111967329	111968329	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	99893.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	7.16805029924578	7.42013526626188	6.88276660522715	6.95762362915759	7.46776331785228	6.50270656300927	-0.194529791026834	0.563737097482515	0.865992481769395
Merged-chr6-128662393-1	chr6	128661893	128662893	+	629.0	f0_balb.idr	promoter-TSS (NM_053165)	promoter-TSS (NM_053165)	8.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	2.96920878244597	3.11293348845718	3.15816522964886	2.80683763590448	2.80788499853262	3.17417689089242	-0.685721524901761	0.332546020205248	0.723654123936882
Merged-chr7-130968688-4	chr7	130968193	130969193	+	964.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	32490.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	3.46871416950994	3.60737960647396	3.48566752632368	3.64810880059139	3.54502354434901	3.61128154642939	0.269694140751884	0.631264919008243	0.895122791781359
Merged-chr2-180698295-2	chr2	180697795	180698795	+	773.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	3807.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	4.05231488057617	4.10187079332403	4.29952790095408	3.7834076722428	4.05640341020368	4.2396148746069	-0.329148851357145	0.515726503423394	0.843888436743698
Merged-chr6-113377856-6	chr6	113377371	113378371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133932)	promoter-TSS (NM_133932)	-242.0	NM_026552	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	8.24217823740604	8.47005781719107	8.36443973817843	8.5267428303444	8.52249253895392	8.53079261651049	0.227744849216344	0.264987238080246	0.662790696671811
Merged-chr15-98541171-4	chr15	98540641	98541641	+	939.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6872.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	5.94059589714862	5.56919654881163	5.33352032783526	5.29889796037355	5.22005180912227	5.265158801755	-0.751178235971022	0.037895628769268	0.24075891262375
Merged-chr3-135211968-4	chr3	135211396	135212396	+	887.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-667.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	6.2730532120613	6.42510243641955	6.05634991368224	6.29874435350216	6.28776441574347	6.18498789608607	-0.0160109207111816	0.955431721336482	0.989763164889919
Merged-chr15-6554230-2	chr15	6553730	6554730	+	589.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25617.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.19417864588303	6.11464330108572	6.29609670503032	6.21233987379269	6.00979246824977	6.53186956520685	0.0952842059892606	0.753452921495542	0.938549578325581
Merged-chr7-101539149-2	chr7	101538676	101539676	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16626.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	5.59679733231099	5.389480103521	4.70738576689503	4.39946881158239	4.50879983301558	4.50142647255904	-1.83860128115167	5.18993541881133e-05	0.00163244485912016
Merged-chr4-108369413-4	chr4	108368916	108369916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001099303, intron 2 of 2)	intron (NM_001099303, intron 2 of 2)	14239.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	6.67476571928324	6.4170602176915	6.41219186574609	6.72586034799242	6.72789523684178	6.59894386444743	0.282057366526243	0.289679279602995	0.687412238674968
Merged-chr5-31188421-2	chr5	31187921	31188921	+	718.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127356, intron 10 of 11)	B2_Mm2|SINE|B2	4718.0	NM_001127355	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	2.55771221396463	2.45358077891921	2.60628708463212	2.38579362422337	2.4082377878675	2.49208218451124	-0.683603874789503	0.391719934875927	1
Merged-chr19-21782460-2	chr19	21781960	21782960	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	4120.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.52395264238123	3.87230505110072	3.77429005781892	3.73555589233577	3.59511590337017	3.89231467402787	0.0237869789114728	0.96597009589067	0.992191481673282
Merged-chr19-55751813-3	chr19	55751286	55752286	+	699.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	9976.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.50124708705342	3.62126462259368	4.06180957435493	3.7480146714416	3.76541972928858	4.12856031430608	0.459119916284973	0.427821147071695	0.794725559921005
Merged-chr11-116490422-5	chr11	116489901	116490901	+	974.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026364)	promoter-TSS (NM_026364)	-55.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	6.57168428343509	6.42831688323346	6.48300374393964	6.54551102812997	6.40193407257683	6.29321541182848	-0.120574501069689	0.654574056737745	0.903872559164033
Merged-chr6-57706879-2	chr6	57706379	57707379	+	744.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	intron (NM_133737, intron 1 of 8)	4424.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	5.44230819515495	5.50127522645741	5.13399467367798	5.51985379883607	5.75600424158644	5.33944626999154	0.347284623967034	0.332017695527703	0.723304009500642
Merged-chr1-191313362-2	chr1	191312884	191313884	+	933.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4734.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	5.6474310230342	5.6956046904205	5.5497225495666	5.92150818681835	6.04098557198799	5.93002328425899	0.593600771132182	0.0511533410911177	0.288274108060259
Merged-chr12-100168802-4	chr12	100168314	100169314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9161.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	6.79915029340382	6.90460258337663	6.82710014163704	6.71962348888493	6.97700253015226	6.8105281174994	0.000733119824918802	0.997684707975146	0.999535504317229
Merged-chr2-45196693-4	chr2	45196187	45197187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79245.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	8.49740358233085	8.72904179678272	8.48498380489172	8.53244178146864	8.89630894893457	8.37857560795294	0.0701080398175508	0.769105138204176	0.942999238767139
Merged-chr5-25222905-4	chr5	25222447	25223447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144908)	promoter-TSS (NM_144908)	75.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	8.12084489139505	8.30539548021358	7.75485840796722	8.10468466649303	7.81419917241969	7.661853519785	-0.29856971125787	0.251880892290526	0.649428218365646
Merged-chr13-64150982-2	chr13	64150482	64151482	+	596.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361047, intron 1 of 5)	B1_Mus2|SINE|Alu	1391.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	3.05620467917667	2.85254388480105	2.91741049079702	3.09549526557511	3.36718791232367	3.17471959393165	1.23743959292094	0.0705894240832884	0.348251203552844
Merged-chr13-52624276-4	chr13	52623769	52624769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	27387.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.35796734467172	4.35993758916701	5.05287348129212	4.41050168724259	4.46466688403772	4.7595493219776	-0.17701912784724	0.71617232705424	0.926569584146506
Merged-chr2-92056225-4	chr2	92055720	92056720	+	831.891663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32050.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	4.94256782904971	5.12186697127629	4.25357076005696	4.56832043511281	4.77711362303269	4.70221330530256	-0.335452403863314	0.485807111489298	0.827573679263522
Merged-chr8-13758571-3	chr8	13758037	13759037	+	932.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	881.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	4.81913503011796	5.25642967896583	4.97110075180085	4.95190301055939	5.13783829987206	5.03629856164823	0.028104679839525	0.942486505952378	0.987202156853573
Merged-chr16-77315452-4	chr16	77314953	77315953	+	806.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-13875.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	3.63917744262128	3.46633744284956	3.93115923354693	3.70512904988679	3.63013319448332	3.76138576716946	0.0456168095865602	0.935649727495408	0.985887226793611
Merged-chr15-9129835-2	chr15	9129335	9130335	+	837.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	10619.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.13049661788894	5.18365181806035	5.57092163322552	4.94718408382116	4.85135626080013	5.01293130872876	-0.764871360280564	0.0450794064790913	0.267868831986876
Merged-chr4-139196700-4	chr4	139196190	139197190	+	922.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	2579.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.77388979363789	6.46512755999203	6.73210421749444	6.95497971432819	6.74547385976024	6.8210948561162	0.283530357624583	0.283598581643213	0.681376161050487
Merged-chr3-104901608-3	chr3	104901087	104902087	+	697.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253702, intron 11 of 13)	intron (NM_001253702, intron 11 of 13)	37081.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	3.96166904691226	4.18042430963067	4.32146254895138	3.88525157294303	3.84567890009876	4.17641108378707	-0.553206552076532	0.276771808230165	0.67408352270136
Merged-chr7-82866264-4	chr7	82865780	82866780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1053.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	5.5579693967779	5.6809821432031	5.6975435682978	5.84586048351674	6.05058481962903	6.35850161066641	0.796381004441639	0.0132449869286177	0.122264130503264
Merged-chr8-70833217-5	chr8	70832737	70833737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6483.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	8.3518489798992	8.43495757562819	8.12497464642861	7.97304208831551	7.92238174171602	7.78356015154276	-0.588508796602782	0.007712633372341	0.0838125633597688
Merged-chr12-86082972-2	chr12	86082472	86083472	+	986.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_029601, intron 1 of 7)	intron (NM_029601, intron 1 of 7)	411.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	4.3604433310601	3.92569765362155	4.39914651149343	4.10123758125771	4.02119647875396	3.913650071403	-0.633225532048868	0.215122534791642	0.608457502473637
Merged-chr5-65592555-2	chr5	65592055	65593055	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016786, intron 5 of 6)	intron (NM_016786, intron 5 of 6)	55310.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	3.33534624383003	3.74512042740728	3.51778236865533	3.38526935314838	3.19111646934287	3.58829369227312	-0.578951138168981	0.354819427543979	0.741862808502317
Merged-chr17-5591788-4	chr17	5591292	5592292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99192.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.59580368436799	7.33565136813027	7.08254696487425	7.52001750471475	7.57971912593094	7.16713699023348	0.116538140897992	0.665030019054511	0.907721942545399
Merged-chr6-15759447-2	chr6	15758947	15759947	+	776.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38786.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.77168735464842	6.05310074344145	5.78004233141422	5.76877651418231	5.58148652313156	5.62643658823495	-0.400190534508677	0.207691180078647	0.598599505091239
Merged-chr16-24348182-4	chr16	24347636	24348636	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45214.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.85706631866589	5.48639931791836	5.58867089405524	5.41410550747252	5.80363617099207	5.38006604480579	-0.176148509212646	0.619931184295336	0.889979882381751
Merged-chr8-70652723-2	chr8	70652247	70653247	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6991.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	2.92392032279299	2.84706374199222	2.9611679462183	2.68147132428035	3.16363954013491	2.85070301776485	0.0570332902669151	0.939265221622661	0.986642049891601
Merged-chr8-120786590-4	chr8	120786114	120787114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	47975.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.27561446263977	5.01357587089499	5.24231279795139	5.37312162123988	5.14582133084122	4.87670192643036	-0.048585965579652	0.898891178402035	0.976432549466174
Merged-chr9-64022086-4	chr9	64021589	64022589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-30.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	6.31954323677749	6.27808821129926	6.48158109507822	6.80360662369638	6.77769737068863	6.55875664360481	0.591845534646417	0.0263863363820372	0.192918348985804
Merged-chr6-97379557-3	chr6	97379062	97380062	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	79724.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.77532012665424	3.93436650077934	4.39995023814307	3.70423659092388	3.71433952043899	3.59771762197979	-1.18848946307367	0.0373161916831439	0.238443071538246
Merged-chr14-47351067-4	chr14	47350544	47351544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22816.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	8.39462834351017	8.57564838001331	8.23092375062855	7.97690162260423	8.22901896962246	7.63995114911507	-0.604382764930288	0.017549594618642	0.147995000408226
Merged-chr5-120503163-2	chr5	120502663	120503663	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	460.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	7.50533570681628	7.90632825004463	7.50343008174851	8.06820379056955	7.87211486170655	7.43041517603833	0.238643838604293	0.387208404672521	0.767462350491678
Merged-chr7-43562204-4	chr7	43561694	43562694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008549)	promoter-TSS (NM_001008549)	-176.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	6.63362876021638	6.88100415471657	6.7778249078116	6.97648906129449	7.26072182062357	7.16271797172125	0.570387065480505	0.025271321140366	0.188242732958053
Merged-chr8-95427782-4	chr8	95427275	95428275	+	946.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	7094.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	5.3935544976201	5.21801759140231	5.3034779818148	5.10137707695295	5.4069921223504	5.17168503307114	-0.127128597458503	0.722129617804755	0.928715455235754
Merged-chr19-56599061-3	chr19	56598540	56599540	+	747.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025811)	TTS (NM_025811)	50779.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	6.06865403865795	6.467166884289	6.10594369306637	5.94903405734329	6.01526188538277	5.80293882436252	-0.515143414836334	0.0953662145132252	0.411621121341241
Merged-chr16-44764718-1	chr16	44764218	44765218	+	681.0	f0_balb.idr	Intergenic	Intergenic	-1018.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	4.25091359565809	4.51277529000753	4.59545590591441	4.15123126407445	4.44243440176383	4.5442702226213	-0.175761354318014	0.703661057560356	0.92215250937083
Merged-chr2-155050404-2	chr2	155049904	155050904	+	989.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_015770, intron 3 of 3)	intron (NM_015770, intron 3 of 3)	24093.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	6.46416638394826	6.68918094887665	6.32807797183293	6.30387388603906	6.45092067697728	6.10977592200759	-0.334924359828958	0.249013118566354	0.645963956644956
Merged-chr17-47593436-4	chr17	47592944	47593944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-23.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	5.80107052206593	5.92007524420254	5.86260475538457	5.75641489130124	5.92783116142575	6.03843364263511	0.0818193023215394	0.787050473506701	0.948693859994902
Merged-chr1-85775213-3	chr1	85774710	85775710	+	926.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108086)	promoter-TSS (NR_108086)	-61.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	2.72810819286885	2.92150082350493	2.84523979585738	2.45047585759863	2.48247106807665	2.73753242411306	-1.60252004558809	0.0466837074312155	0.273397853419545
Merged-chr4-114970950-4	chr4	114970451	114971451	+	944.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	16277.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	4.80836818070653	5.00503090941589	5.21595519993854	4.88621578011065	4.91516476605394	5.47373815780833	0.201884115474047	0.627152605102246	0.893013107764865
Merged-chr6-39002646-1	chr6	39002146	39003146	+	587.5	f0_balb.idr	intron (NM_011539, intron 5 of 12)	intron (NM_011539, intron 5 of 12)	64940.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	5.32199553887674	5.19751111060146	5.27891871957291	5.1529583248996	5.49977282867651	5.2124422969584	0.0860893650002571	0.809776348621211	0.954796906768851
Merged-chr5-100037922-2	chr5	100037422	100038422	+	600.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_016690, exon 2 of 8)	exon (NM_016690, exon 2 of 8)	1300.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	4.91252945378606	5.09058515744103	4.84191551594069	5.06019019191252	4.95777180042317	4.74765863002016	-0.0528590564444347	0.892047567794632	0.974942585822634
Merged-chr7-4148061-2	chr7	4147561	4148561	+	552.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_175529)	TTS (NM_175529)	1811.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	4.76987264672977	4.52505127534374	4.92471657469571	4.84247516466153	4.8921559768905	5.02295219094787	0.40045252808754	0.320018301025319	0.713841334732408
Merged-chr7-28867822-4	chr7	28867305	28868305	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3419.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	3.02483773073903	3.31217633117638	3.12589863413022	3.06301783716845	2.86449866416603	2.82452476434061	-1.10667855706364	0.116765805940754	0.456276129499372
Merged-chr7-43664627-2	chr7	43664127	43665127	+	985.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4466.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	7.00053340881074	6.69622233063828	6.86369117986814	6.89960453887837	7.09214465858012	7.2935927775326	0.371626177110416	0.159386189541346	0.531559013319692
Merged-chr8-69774949-4	chr8	69774347	69775347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177899)	promoter-TSS (NM_177899)	64.0	NM_177899	330788.0	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	7.30638252046044	7.74920348987771	7.0611482629065	7.50781845475255	7.38908828758206	7.36719109960794	0.0110636001939542	0.967979253645843	0.992637726147858
Merged-chr6-125094594-2	chr6	125094094	125095094	+	851.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1387.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	3.71683594581801	3.52839903158737	3.71128304142303	3.34579180688493	3.61900979347375	3.57355916897037	-0.464663759323149	0.421063360028871	0.790122251976347
Merged-chr3-85195275-4	chr3	85194794	85195794	+	920.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-122225.0	NR_040542	73283.0	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	4.91023439607	5.16955023742047	4.66143474466664	4.50751990932277	4.93164310291231	4.84929612616459	-0.357767691586297	0.405530774176624	0.780279107725129
Merged-chr10-62650537-2	chr10	62650037	62651037	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358820)	promoter-TSS (NM_001358820)	681.0	NM_001358819	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	7.14184025348207	7.71954236976128	7.4312366259405	7.36751317958107	7.38318210580107	7.40416112901147	-0.10564780269215	0.685209844018168	0.916197022353588
Merged-chr12-38783651-2	chr12	38783151	38784151	+	549.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163154)	promoter-TSS (NM_001163154)	-60.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.86635736067614	3.2023084929496	3.09803690506601	3.03573263286365	2.80812970878062	2.99343300637459	-0.545746499832032	0.436651615134954	0.799551248563286
Merged-chr3-68952219-3	chr3	68951664	68952664	+	871.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026641, intron 8 of 19)	RLTR45|LTR|ERVK	52406.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	3.77774740461345	3.65672422962823	4.07116926538109	3.91563267840452	3.93000121249014	4.30664517426337	0.661233427233672	0.218397091350804	0.61254542680816
Merged-chr19-6459724-4	chr19	6459229	6460229	+	994.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	40991.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	2.54024384150292	2.72144258941081	2.76602410082818	2.59277970837987	2.82491081573804	2.58772264623865	0.00754903262509635	0.992232611846636	1
Merged-chr2-164935174-1	chr2	164934674	164935674	+	599.0	f1_balb.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-13045.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	2.06254130728834	1.96227747887465	2.00473182503731	2.15377169347213	2.11739641911445	2.2807345310304	1.32187260163355	0.15212075624554	1
Merged-chr13-60671973-2	chr13	60671473	60672473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69762.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.97139444525655	8.08344903956541	8.01124026190548	7.65056689143712	8.07463078198389	7.77416968021219	-0.242651984096025	0.300702359154897	0.697410152504161
Merged-chr11-118980548-4	chr11	118980050	118981050	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-7631.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	4.45161661839011	3.98319620525802	3.93978057157915	3.97475647125781	4.03769307042726	3.79300121681258	-0.603872267782559	0.259238812907117	0.656825376873982
Merged-chr17-28513931-4	chr17	28513449	28514449	+	998.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	6.61699603949146	6.77316197173648	7.03318435331795	6.66802111221701	6.65644321930763	6.77743012828921	-0.175621926115085	0.510248433951084	0.840794353853807
Merged-chr12-102298006-2	chr12	102297506	102298506	+	588.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	14365.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.46111393049395	3.15610825332603	3.58282294098579	3.02274449822595	3.14618127980639	3.34302210110649	-0.951714774970577	0.149777101458781	0.516263772882702
Merged-chr3-106474401-4	chr3	106473915	106474915	+	948.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-8016.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	4.36626053707527	4.47891421395594	4.2340808204456	4.67356662078438	4.62170256287363	4.84331299608504	0.82946680079602	0.0557481615217074	0.303917514505551
Merged-chr18-36342083-4	chr18	36341599	36342599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6525.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	4.42388798429346	4.25979075580047	4.49136593668626	4.37941711039641	4.29332796997988	4.05328971606416	-0.353843628380284	0.447099902308322	0.806270036091875
Merged-chr3-20023141-3	chr3	20022664	20023664	+	731.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	12146.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	2.92315108308318	2.84631595156121	2.90692048846457	3.02542711790157	2.95528877257379	3.26551138595961	0.888261960995978	0.19614664759435	0.583934534992153
Merged-chr3-89785549-4	chr3	89784991	89785991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11882.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	5.4911616099304	5.38780726985339	5.25349880408004	5.71245714447979	5.66990837148583	5.3186217515874	0.383543591971934	0.26650770536318	0.664166899200562
Merged-chr7-98178260-4	chr7	98177736	98178736	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	38.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	6.18400097310863	6.35485519853519	6.03332454217895	6.65881976305143	6.48893518477267	6.47007499868393	0.548719029159162	0.0511757538176449	0.288364403771206
Merged-chr14-8003307-2	chr14	8002807	8003807	+	544.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331064, intron 1 of 8)	intron (NM_001331064, intron 1 of 8)	341.0	NM_001331064	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	2.43019939469657	2.29488338436491	2.40718271913486	2.23977542249144	1.99740495716733	2.14955381472612	-1.89070476896734	0.0486349518293619	1
Merged-chr18-46739685-1	chr18	46739185	46740185	+	567.0	f1_c57bl6.idr	intron (NM_026217, intron 1 of 3)	B2_Mm2|SINE|B2	1894.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	2.86519621963719	2.66546515612195	2.60957534095886	2.82541528300166	2.78134111230349	2.99436399254646	0.736650901550976	0.324235117390104	0.717324268869843
Merged-chr6-35236573-4	chr6	35236077	35237077	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027513, intron 34 of 42)	intron (NM_027513, intron 34 of 42)	-16122.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	5.04831822802354	5.31130353515805	5.40562438393571	4.93406914392965	5.2624542220365	4.86666439532429	-0.435058224309451	0.264922698519902	0.662780660668275
Merged-chr7-83658427-2	chr7	83657927	83658927	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	B3|SINE|B2	-2932.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.48265942628381	6.3857288368694	6.29906858894356	5.85351761613243	6.16092291814792	6.21874438118805	-0.516712666945481	0.0755660689795798	0.36188209885772
Merged-chr14-63413758-4	chr14	63413284	63414284	+	818.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	3403.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	4.61011178057504	4.6785358684629	4.49495678064251	4.59070000850427	4.45456626382384	4.60393276375085	-0.138848568113465	0.740191763593413	0.934499978758628
Merged-chr7-109209273-2	chr7	109208773	109209773	+	576.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34066.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	4.48527559903561	4.58027844557162	4.65382118676069	4.40549788876752	4.28960059478214	4.30236927899393	-0.610868748045102	0.159053241911639	0.531058230126547
Merged-chr7-101968440-2	chr7	101967981	101968981	+	731.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1362.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	2.76072566303904	2.42093051460011	2.69459189151235	2.67321128784998	2.62672038238785	2.76797852589243	0.301822911735537	0.699590294862502	1
Merged-chr7-44306187-2	chr7	44305642	44306642	+	688.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009131, intron 2 of 3)	intron (NM_009131, intron 2 of 3)	817.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	2.44813087281547	2.4137656264434	2.75097307910463	2.60214506329252	2.43269049669391	2.45193043561915	-0.254246643730581	0.754062523558565	1
Merged-chr5-26905374-4	chr5	26904875	26905875	+	914.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	597.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	3.81384474262914	3.58113274381652	3.80120867596868	4.42565949452693	3.92942610069741	3.92593948281159	1.17165391654006	0.032123898917916	0.217632745575798
Merged-chr5-150117018-4	chr5	150116591	150117591	+	650.643738	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	98416.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	3.01859821444489	2.91007099409004	2.94523191045747	3.34837154786897	3.2462438793383	3.20318506407274	1.3821733353944	0.0371593754522167	0.237879467043241
Merged-chr4-133207027-4	chr4	133206497	133207497	+	862.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	5539.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	4.10686718516329	3.73313550256586	3.93188688733376	3.59918905767562	3.77387119048527	3.74900991025055	-0.712331900148716	0.190207222967325	0.576415469287827
Merged-chr16-57554267-1	chr16	57553767	57554767	+	585.0	f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5025.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.12107017896365	5.82449267962857	5.87160207637501	6.29172328835923	6.14737219666182	6.12116704107798	0.411043551644406	0.167125838110406	0.54278714822368
Merged-chr10-62213703-4	chr10	62213204	62214204	+	721.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197996, intron 1 of 7)	ORR1B1|LTR|ERVL-MaLR	17514.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	3.82489150878638	3.8452374363453	3.90834110721655	3.78024819870462	3.7559565187826	3.97646175124527	-0.0753093408855064	0.88400206344026	0.973466734537782
Merged-chr9-82974331-4	chr9	82973844	82974844	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081216, intron 4 of 39)	(CCG)n|Simple_repeat|Simple_repeat	1145.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	6.77001857446062	6.7360459349643	6.80170544714131	6.69539982426429	6.91599540548384	6.72117465528105	0.0319639863700513	0.899540733553766	0.976656120908248
Merged-chr8-90828794-4	chr8	90828302	90829302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-33.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	6.17615690480972	6.22491191397078	6.36122535820279	6.37847943557597	6.40918099532949	5.94176919413512	0.0369292595826581	0.901738955561026	0.977356766938531
Merged-chr7-19669589-4	chr7	19669100	19670100	+	955.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4320.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	5.68354736322016	5.4259407982095	5.73021913583532	5.6323662165172	5.5634347163893	5.63552784914738	-0.00942059011602812	0.976887384116386	0.994769134402338
Merged-chr17-56182889-2	chr17	56182389	56183389	+	673.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_080837, intron 1 of 5)	PB1|SINE|Alu	1031.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	4.3849962234424	4.3505468405457	4.26137090034088	4.30095077929302	4.37987210170378	4.03260377244227	-0.210194472479849	0.653267973658875	0.903272317993414
Merged-chr5-99381794-4	chr5	99381281	99382281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-128854.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.97637299474389	8.39082601904616	7.70299127464859	7.88519477111782	8.33426052769672	7.68314528057083	-0.0799358457178553	0.786046996386018	0.948302887812092
Merged-chr7-110614383-4	chr7	110613883	110614883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177324, intron 1 of 40)	CpG	537.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	8.20586688434175	7.81590875645698	8.03495324721359	8.17658884659495	7.7968184315319	7.86156759709685	-0.103542471957611	0.672680737118983	0.910949422492829
Merged-chr5-124023848-1	chr5	124023348	124024348	+	834.0	f1_balb.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	8412.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	4.79751772641024	4.6326931299795	4.80694826381291	4.92770676833199	5.0058289859115	4.71514697927551	0.350348845409738	0.377728548979862	0.760134398363074
Merged-chr7-128378495-2	chr7	128377995	128378995	+	898.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026418, intron 4 of 4)	AT_rich|Low_complexity|Low_complexity	39677.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.96361920355087	6.06623467859781	5.61669017451568	5.80693681191626	5.74380778932634	5.67990425670723	-0.29003189064491	0.365000398371291	0.75019645162727
Merged-chr4-134490197-3	chr4	134489695	134490695	+	945.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1ME4b|LINE|L1	-6566.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	3.77010633983312	3.68819709509968	3.50807825607786	3.04558069176539	3.23963354926606	3.02984355852988	-2.23999447309193	0.00138401325030266	0.023241367211137
Merged-chr11-113100875-2	chr11	113100407	113101407	+	740.25	f0_balb.idr|f0_c57.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100931.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	4.55472325513121	4.6468511047508	4.55292181687654	5.09878686393156	5.40101193450882	5.05724443966756	1.3637654530959	0.00056747173779279	0.0115986706849085
Merged-chr1-165681589-4	chr1	165681014	165682014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	26580.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	8.30049164048972	8.15304028004819	8.00055393690346	8.08982882642378	8.27880099076779	8.07102055238901	-0.0107387935154138	0.961279239875392	0.990497927102774
Merged-chr10-54121307-2	chr10	54120807	54121807	+	616.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45385.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	4.19040280707586	4.04169738927284	4.46709329300771	4.41163632113592	4.05477178588566	4.49349932301715	0.239525048905655	0.626712201511971	0.892916235446326
Merged-chr1-34236510-4	chr1	34236005	34237005	+	898.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276764, intron 60 of 102)	intron (NM_001276764, intron 60 of 102)	76175.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	2.91598539650614	3.01152837736343	2.89899218922165	3.09441653343819	2.89860235433855	3.03283244760219	0.294915920077539	0.664791306118097	0.907721942545399
Merged-chr9-13246891-4	chr9	13246417	13247417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025534)	promoter-TSS (NM_025534)	-39.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	5.1180521897811	5.24902462244634	5.27120066496156	5.11078210722404	4.95270948577688	5.20926636338326	-0.26250196289771	0.467759806367934	0.81815434317961
Merged-chr15-8512392-2	chr15	8511892	8512892	+	562.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-67929.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	3.44508807229333	3.86374217841312	3.86562995671322	3.57233287754497	3.59191834211501	3.63398958833636	-0.47102565737075	0.411985456051379	0.784193340882693
Merged-chr11-117655114-1	chr11	117654614	117655614	+	711.0	f0_balb.idr	intron (NM_198022, intron 1 of 21)	CpG	825.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	6.76113728115226	5.98130551888131	6.58099676053796	7.08792991613412	5.76735514516488	6.24882553453782	0.0208735406252311	0.975943845614387	0.994572735300192
Merged-chr7-128234999-4	chr7	128234486	128235486	+	997.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-2371.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	4.05156549076881	3.65607662676788	4.1395909635048	4.19097518166075	3.91580163908688	3.92190273861561	0.167234494314973	0.755026437452268	0.93920317841755
Merged-chr7-123356352-3	chr7	123355873	123356873	+	762.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	13542.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	4.36151909397692	4.42999354658771	4.17859001907215	4.56973798797364	4.7189468357046	4.43916942065156	0.636667730523854	0.152536351038004	0.520664753545154
Merged-chr2-173528172-3	chr2	173527637	173528637	+	696.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028158, intron 3 of 3)	intron (NM_028158, intron 3 of 3)	5545.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	5.18874754142207	5.01156900103161	5.06080851082667	4.99429717606212	5.17494100274426	4.94468872209525	-0.0827899972987395	0.823456009205059	0.958366850481353
Merged-chr19-23759727-4	chr19	23759268	23760268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	892.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	4.05403341162115	4.00496334940661	4.32852552574619	4.18667745538183	4.39214265567253	4.55482044634527	0.693136451732085	0.146122879755606	0.509879752524719
Merged-chr10-80921609-2	chr10	80921109	80922109	+	546.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3364.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	2.22989626986935	2.26139406741337	2.40142246241423	2.23795673582073	2.29746831942705	2.07557606657029	-0.590457784289186	0.512817120140625	1
Merged-chr16-55801788-4	chr16	55801292	55802292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20346.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.6553748658736	5.53488958669853	5.37365090181986	5.2857809556454	5.5293749439656	5.34208623017177	-0.260535428741996	0.445409501035559	0.805134764189264
Merged-chr15-41350084-4	chr15	41349575	41350575	+	902.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97407.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.83935719818384	2.72881899709868	2.85984228598147	2.46169587293122	2.33985377496592	2.62886508062869	-2.09628852411387	0.0135231038114786	0.123828592708871
Merged-chr5-64239514-2	chr5	64239014	64240014	+	872.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	9157.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.84241570279319	5.96784984075823	6.2645461671364	5.91765722705521	6.22874845567406	6.18717636822829	0.161165655930051	0.603963417450308	0.882883084260734
Merged-chr17-57250040-1	chr17	57249540	57250540	+	912.8333130000001	f0_balb.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	589.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	4.36305282995084	3.9944632739767	4.4017734575316	4.25655656974499	3.7431904453987	3.96870891716872	-0.727912870447224	0.169859671046005	0.547029299171809
Merged-chr6-113419349-4	chr6	113418867	113419867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346511)	promoter-TSS (NM_001346511)	-19.0	NM_001346511	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	4.04746044692418	4.38713677521067	4.38272336893802	4.09211534116419	3.92951941382395	4.09931191424855	-0.693865962229199	0.156559678991426	0.527302884821637
Merged-chr7-141467787-4	chr7	141467294	141468294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-23.0	NR_152219	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	7.07659396320678	7.33013572901578	6.94921896992082	7.14378849532544	7.52616562277096	7.20655609848863	0.261077915766264	0.323972521513312	0.717249509633878
Merged-chr1-171019814-4	chr1	171019313	171020313	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144559, intron 2 of 4)	intron (NM_144559, intron 2 of 4)	887.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	6.94760028917966	6.86088484957023	6.95713554326271	6.99354049624735	7.32752909601692	6.90114652705388	0.271249740915846	0.297176316600677	0.693830312086969
Merged-chr1-85650021-3	chr1	85649523	85650523	+	735.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313712)	promoter-TSS (NM_001313712)	35.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	5.34577544461434	5.39762027461965	5.62484085129844	5.77630228010114	5.54236333452429	5.95030214169835	0.567144640578126	0.0934646566862724	0.407193389963535
Merged-chr3-95655333-2	chr3	95654833	95655833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3388.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	5.31119301077634	5.10514930874244	4.98810762493483	5.45939980372632	5.36566793355023	5.29871961704865	0.457072943049718	0.199973210109531	0.5887333569258
Merged-chr9-40809733-7	chr9	40809166	40810166	+	923.095215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8393.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.81079719893682	4.84638099626982	4.72394780921972	5.08540225552483	5.23063980247491	4.94840264931702	0.659622594053908	0.0838818505804657	0.383307026005993
Merged-chr11-52094796-4	chr11	52094315	52095315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4009.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	6.81800683523314	6.93238582373406	6.42981220353574	6.11563750903776	5.88821181241696	6.01913395139501	-1.22754001175128	3.08190042585517e-05	0.00105313663504951
Merged-chr5-141004421-7	chr5	141003922	141004922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3826.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	6.27548064518966	6.45835659515438	6.17737840247987	6.2394784125763	6.56807836906196	6.23805974738698	0.0873034915853362	0.765058774135333	0.942123616786297
Merged-chr4-116665211-3	chr4	116664724	116665724	+	692.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13550.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	4.87202759289656	4.8043044835864	5.15268748918295	4.87616313564675	4.7552389795112	4.88059299673485	-0.236674790529716	0.546986306948973	0.859168905101902
Merged-chr12-111416925-4	chr12	111416442	111417442	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028807)	promoter-TSS (NM_028807)	-488.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	3.83717651043523	3.56900743630426	3.63333191751358	4.03912191537458	3.65511864093619	3.8120743313992	0.505606896470998	0.363588875071583	0.749238542731527
Merged-chr10-82696814-7	chr10	82696356	82697356	+	845.5714109999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2151.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	4.36411296329425	4.38065074917338	4.60623352924245	4.74184656757316	4.63565584676755	4.2261197032458	0.284101813351259	0.533752000910489	0.852626014931367
Merged-chr9-23594826-4	chr9	23594325	23595325	+	986.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	371749.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	4.61129130064854	4.70362845230685	4.91955416827084	4.95484061147603	4.97906808502412	4.76022846870295	0.378043347702047	0.342343128431956	0.731283521951228
Merged-chr7-75715172-2	chr7	75714672	75715672	+	611.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-133166.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.12975564179185	4.07012693532966	4.26788491932566	3.9871343227912	3.91350238857445	4.24917807835478	-0.305268667113291	0.533836729626709	0.852715482371668
Merged-chr10-127629603-2	chr10	127629084	127630084	+	621.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8436.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.39294504646221	3.22425747553073	3.51714458132478	3.1496472230418	2.96379279587898	3.32456727146603	-0.97248114948477	0.138442281431225	0.497209965018279
Merged-chr1-36941356-4	chr1	36940845	36941845	+	803.729126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1818.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.89000992286673	4.73840470496963	5.04017614166471	4.95013670649189	5.18879992829253	5.35151278798165	0.603013435885384	0.118057053883921	0.458946521191052
Merged-chr15-58622603-3	chr15	58622099	58623099	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	200828.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.11967897671287	4.85906981367784	4.6859178655564	4.86904543797813	5.01827413427005	4.71130970830241	-0.0614566966091048	0.880545821043127	0.972540920690587
Merged-chr4-152152397-4	chr4	152151883	152152883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207687)	promoter-TSS (NM_207687)	-176.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	4.46358677710167	4.45622825680455	4.45492613569884	4.12824669402733	4.15924186245909	4.26092117675337	-0.745119892863126	0.0960980256271816	0.413322944948321
Merged-chr17-73927156-4	chr17	73926590	73927590	+	945.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	23106.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	5.99936054818356	5.95435647238751	5.61291491325171	5.69479558272434	5.6656070711944	5.55843685062203	-0.42219540281734	0.188731584642138	0.574222837446979
Merged-chr7-142458136-4	chr7	142457629	142458629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2683.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	3.34458206795062	3.19020832729081	3.47248628087881	3.98693416311964	3.76473935054122	4.00285822905842	2.12741615648566	0.000364813635992288	0.00817323990943627
Merged-chr4-154334889-3	chr4	154334403	154335403	+	748.194458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291026, intron 11 of 16)	intron (NM_001291026, intron 11 of 16)	-35008.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	2.80383561301332	2.61537460294782	2.82724664459323	3.17678225226771	3.10752286266048	3.31108884688165	2.26512408276107	0.00243420159717696	0.0359519862591201
Merged-chr17-71479706-3	chr17	71479201	71480201	+	977.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4358.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	3.11353870716399	3.33109450035953	3.35152401810791	4.02363849431373	4.17436065371782	3.82727296132917	2.81695983115086	8.66175380779062e-06	0.000353124552101245
Merged-chr5-64625042-3	chr5	64624524	64625524	+	762.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14325.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.82383265519467	3.62684717786797	4.10964204032656	4.88324361641572	4.79418055123899	4.46247529736089	2.45373170705482	1.59353700549071e-06	8.13928403593892e-05
Merged-chr2-117304127-4	chr2	117303626	117304626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38751.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.99512633620663	5.89107209456051	6.09415376095809	6.48310305323561	6.57993739197545	6.69900992247313	0.991966539129975	0.000351234562236596	0.0079330959431549
Merged-chr3-98032388-4	chr3	98031877	98032877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	18839.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.57181874766189	5.16641129873784	5.28954253109151	5.44542059475777	5.0844982078501	5.22305724377377	-0.20017102072118	0.589506100300727	0.876882582082885
Merged-chr9-70421571-4	chr9	70421052	70422052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007630)	promoter-TSS (NM_007630)	2.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	3.64478107598463	3.84733306289297	3.6802390394044	4.02220837383504	3.96905267585746	3.75211362077375	0.61668705290343	0.247275205030874	0.644165031157727
Merged-chr10-40076532-2	chr10	40076032	40077032	+	916.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028247, exon 3 of 3)	3' UTR (NM_028247, exon 3 of 3)	-51264.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	3.62685410694072	4.16047467362463	4.12718300709648	3.65755373427702	3.77078435716788	3.71176086009762	-0.869405320517305	0.122725359253032	0.4687075638099
Merged-chr12-78748147-2	chr12	78747668	78748668	+	679.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-779.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	5.59023528549054	5.86303034231654	5.47883427916167	5.45539939294183	5.37773710452619	4.80668828353736	-0.770610385468341	0.0505655192258784	0.286338350602075
Merged-chr16-44768140-4	chr16	44767634	44768634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	2398.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	5.86619440481302	6.10684181634781	5.72094831492016	5.89721576699635	6.09339334976799	5.78364062381587	0.0407482170854785	0.898023782716843	0.976232172040227
Merged-chr7-100511831-4	chr7	100511327	100512327	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153527, exon 2 of 8)	exon (NM_153527, exon 2 of 8)	2988.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	5.72829210446295	5.5946101841834	5.62819683994563	6.82194596976906	7.26895109182262	6.85640584995515	2.23425475185619	7.19203614164147e-14	1.69049419003871e-11
Merged-chr17-3114082-1	chr17	3113582	3114582	+	561.0	f1_balb.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-890.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	6.31662790591029	6.69199631494486	5.90862611930356	6.09277369674119	6.19368523291872	5.99644242412249	-0.429972748993114	0.195396022337371	0.583055844599173
Merged-chr13-112748249-4	chr13	112747741	112748741	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52536.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	4.03878862883406	3.76486129913236	3.96515051367836	4.2778404302895	4.00716177620659	4.35142005367442	0.830385232401587	0.100736631762757	0.423286414777412
Merged-chr12-26454842-4	chr12	26454320	26455320	+	789.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1632.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	4.75918402552421	4.31539924997311	4.74362824818578	4.57512019396993	4.76487211860793	4.39294609285549	-0.0508206694017697	0.910936241898717	0.979996676367672
Merged-chr2-84458134-3	chr2	84457626	84458626	+	574.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001177320, exon 3 of 8)	exon (NM_001177320, exon 3 of 8)	16048.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	3.02641544389921	3.02242114490867	3.66333442176663	3.44427292687156	3.42471176555748	3.37562978414776	0.567301798234266	0.41049604907461	0.7834072305367
Merged-chr1-88585551-2	chr1	88585051	88586051	+	690.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	34034.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	4.34551788596724	4.22014594221278	4.21611937419662	3.99006649139742	4.16960215223142	4.37083113801533	-0.231167502898811	0.625887912774874	0.892740013819455
Merged-chr8-79498829-4	chr8	79498332	79499332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99364.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	5.5845522792255	5.34028470652336	5.35616815062846	5.52341179269137	5.46047186648114	5.25718071376059	-0.0201702751032818	0.953177605298823	0.989361385177328
Merged-chr1-58973506-4	chr1	58973013	58974013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172406)	promoter-TSS (NM_172406)	-9.0	NM_172656	227154.0	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	6.43299261969108	6.77840693890132	6.59969384725534	6.64210098133347	6.368222800751	6.62555120849765	-0.110101296661227	0.692767796343294	0.918743788819815
Merged-chr8-27260283-4	chr8	27259784	27260784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-43.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	6.80897386357868	7.07200019520181	6.85999931865009	6.79139665280156	6.80254787314066	6.76737124643373	-0.207994778372141	0.4095019167705	0.782838659436654
Merged-chr12-55492374-3	chr12	55491878	55492878	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010907, exon 1 of 6)	exon (NM_010907, exon 1 of 6)	269.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.02874703671496	7.52646072097361	7.49284083061854	7.78008934095471	7.80179778088389	7.6489603112182	0.0487130302143083	0.850235841518353	0.964836457860265
Merged-chr5-99488810-4	chr5	99488344	99489344	+	883.074402	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-235917.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.23392329938756	5.17727223776696	5.6655511181322	5.02096914531958	5.2460443084695	4.90647993062063	-0.586485300429177	0.13360789031176	0.488819290786001
Merged-chr16-38702634-2	chr16	38702134	38703134	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_020260, intron 1 of 11)	RSINE1|SINE|B4	10401.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.1701465088803	3.96092488583042	4.22198005992944	4.11969115276925	4.1141775887458	4.00813914089942	-0.0916518251188203	0.849875876115094	0.964746847431705
Merged-chr19-12540153-4	chr19	12539663	12540663	+	954.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33347.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.9664864080611	4.75101938668406	4.95964218477493	6.53954232421138	6.55758853845163	6.52034851701671	3.07921222030825	2.09295180709653e-20	1.46344818457889e-17
Merged-chr7-126566439-4	chr7	126565890	126566890	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146200)	promoter-TSS (NM_146200)	-24.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	6.49670976422448	6.3686025768161	6.52821121867589	6.5502373105549	6.38529756020346	6.30836711033795	-0.0669884149939759	0.804541378160448	0.953651704501661
Merged-chr14-8174861-3	chr14	8174352	8175352	+	784.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1860.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	3.90230610090982	4.02056752572863	4.05949742120256	3.83483850375229	3.72181345026335	4.03540402535572	-0.410241711746726	0.424362469421383	0.792671673227999
Merged-chr12-102698292-2	chr12	102697792	102698792	+	591.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	6577.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	3.90891977963308	3.76713704350465	3.7695324659184	3.86389888448852	3.89903224255101	3.98884332664568	0.302672157047167	0.554608870499171	0.862883680820358
Merged-chr15-85832798-2	chr15	85832298	85833298	+	906.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033337, intron 1 of 13)	intron (NM_001033337, intron 1 of 13)	494.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	4.48683680275933	4.4158161859355	4.41941332092744	4.57275051276726	4.53491515343489	4.30474515242623	0.105356552022581	0.80862294621482	0.954721853010197
Merged-chr19-55812494-3	chr19	55811973	55812973	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	70663.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.80382091639439	3.63515197203957	3.64933409653429	3.96706050490124	3.64774703290067	3.9737614753767	0.53149728635886	0.330141943590429	0.721729043199842
Merged-chr14-20826139-3	chr14	20825634	20826634	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-10528.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	7.49728252804842	7.44902081146813	7.0571184013512	7.54550368495115	7.71168726063558	7.28353657152969	0.257190761290158	0.328953793822068	0.721082938864213
Merged-chr17-12892295-4	chr17	12891812	12892812	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034866, intron 14 of 18)	intron (NM_001034866, intron 14 of 18)	16278.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	3.15018482621417	2.86111046653862	3.19047822956613	3.22775820258654	2.95040586476936	2.9015079625888	-0.16422198988666	0.81547430961668	0.956376923629434
Merged-chr6-97461319-1	chr6	97460819	97461819	+	592.0	f1_balb.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-2033.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.34024603089517	8.24552995899974	8.32852148147522	8.24482673884952	8.49633505913521	8.03673567993626	-0.0329886792575275	0.884941323516158	0.973538624783452
Merged-chr8-75103658-5	chr8	75103150	75104150	+	721.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17A2|LTR|ERVK	-5859.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	3.581458498673	3.8881856205095	4.16069058595946	3.7607567732977	3.58859808065621	4.30702631467565	0.0705105597068612	0.907008204246142	0.978868492078838
Merged-chr1-176819508-3	chr1	176819000	176820000	+	882.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4840.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	6.82031538439047	6.93161691976003	6.36778378159426	6.8025484463559	6.95662533543512	6.78649980262098	0.174295952477567	0.537707104972816	0.854779024899439
Merged-chr16-32079305-4	chr16	32078790	32079790	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177326)	promoter-TSS (NM_177326)	52.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	7.91618918089428	7.78956723778695	7.44161800978834	7.83070975393895	7.59757400228775	7.73335074041709	-0.0248500029071128	0.91931988867617	0.982011519166154
Merged-chr16-17393129-3	chr16	17392655	17393655	+	924.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001983, intron 1 of 54)	intron (NM_001001983, intron 1 of 54)	-12845.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	3.61768972192043	3.6981341572691	3.44617496364847	3.42313883083986	3.3569149018502	3.51780282438325	-0.619884652827624	0.286483436426292	0.683725296730741
Merged-chr2-165286581-4	chr2	165286071	165287071	+	965.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1216.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	6.73203666442127	6.83132350962912	6.4193076956551	6.44345140681433	6.62913720267691	6.31968360163416	-0.324955103227762	0.252213567104477	0.64970951645701
Merged-chr17-44777629-4	chr17	44777118	44778118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178652, intron 1 of 11)	CpG	452.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	7.43592176917334	7.24844702360004	7.25067852828936	7.50807712380272	7.08201851865889	7.2249939642669	-0.0506128046620526	0.841770845275722	0.963002495523594
Merged-chr13-37913292-3	chr13	37912797	37913797	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 6 of 9)	intron (NM_001039188, intron 6 of 9)	24426.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.70760723858762	2.56963194084581	2.67068908611055	2.65010713952194	2.43303526132118	2.74409579180568	-0.224038699263665	0.773419720044116	1
Merged-chr1-54927506-4	chr1	54926993	54927993	+	931.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1106.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.37556725148413	4.19234806806285	4.41755315533044	3.94133533166807	4.07197479395716	4.22892097120264	-0.687223097588926	0.149308709156421	0.515676534596028
Merged-chr7-83742860-3	chr7	83742338	83743338	+	885.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7299.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	4.12778357170745	3.96839672502111	4.17195999692653	5.02995322880441	4.97378057681689	4.95259384177017	2.28201095134611	2.34290628353666e-07	1.50655754281699e-05
Merged-chr13-38658592-4	chr13	38658126	38659126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025380, intron 1 of 3)	CpG	402.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	5.55545237289981	5.69667210151074	5.80364093217115	5.80974150409438	5.42941426768961	5.39372084462859	-0.228959568301213	0.500960440169621	0.83533412964393
Merged-chr12-85455350-4	chr12	85454845	85455845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-18545.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.4976760067598	7.63448275464648	6.94895454176991	7.12885834159231	7.50415633067284	7.23663547424638	-0.145765921822976	0.612162545882515	0.886573086888594
Merged-chr19-15998332-3	chr19	15997834	15998834	+	783.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	13259.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.1251555371393	2.86162095968062	3.05377228556928	3.06283177479271	3.24861270278187	3.18462236339516	0.673140068271285	0.31536261711953	0.709692649130764
Merged-chr16-90933709-2	chr16	90933209	90934209	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026502, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1140.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	4.10102604527065	3.94222592846863	3.59566391404301	3.73437677748373	3.65134487737426	3.66870811004181	-0.713702798288297	0.200915692042901	0.590247860859073
Merged-chr15-88745531-4	chr15	88745012	88746012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2D|LTR|ERVL	-6199.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	5.76301365440053	6.02444137590801	5.94844493468187	5.74480130081258	5.7046999085338	5.73960836286519	-0.336308146921543	0.273206213376222	0.670469610175445
Merged-chr2-45197558-4	chr2	45197030	45198030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80088.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	8.59970412248454	8.87780195039633	8.46645798005935	8.67279994468118	9.09024275050714	8.56037980297343	0.189954393741599	0.446976810488486	0.806174327982094
Merged-chr6-47561014-4	chr6	47560517	47561517	+	975.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	34013.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	3.81982357546021	3.91306620254887	3.84908760430312	3.649079891537	3.66362019006568	3.71417392366808	-0.623981985219786	0.236563301680097	0.632782306432557
Merged-chr2-27327192-4	chr2	27326675	27327675	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-79872.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	5.75656342709019	5.46883561359561	5.62320329311192	5.48370186998539	5.08894267338805	5.27106627288377	-0.646743429449588	0.0664513197050767	0.336720139456795
Merged-chr1-144242671-4	chr1	144242159	144243159	+	998.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6445.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.67664371813711	3.49051024742237	3.64290712983401	3.28035974465298	3.47740290281312	3.38845024724395	-0.797011116797403	0.178076261092826	0.559118345790044
Merged-chr7-81859706-4	chr7	81859221	81860221	+	788.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	720.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.71469776206533	7.8818001084948	7.71770890176669	7.42081123650579	7.5482890204921	7.65882221823497	-0.337301175716957	0.134966729804635	0.491028448847189
Merged-chr9-82975636-7	chr9	82975110	82976110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-121.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	7.20407127883693	7.45282724864234	7.2696994202919	7.35664440508264	7.18273351105077	7.41449404846147	0.000227910701461794	0.999243717090131	0.999910586345539
Merged-chr16-24628689-5	chr16	24628184	24629184	+	784.099976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-93171.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	8.14420975160524	8.23719713269412	7.22070659868424	7.68846707688383	8.13480290269995	7.439607249611	-0.223230771493316	0.511891278396191	0.841619835183182
Merged-chr13-81351666-4	chr13	81351146	81352146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	281498.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	7.63902154664336	7.80438768976474	7.60468187627476	7.57471540995398	7.75214261991855	7.6138577757962	-0.0528327956880248	0.814322167065323	0.956208769394114
Merged-chr16-4905244-3	chr16	4904719	4905719	+	816.299988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	19119.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	5.08215703880667	5.21277979829599	5.13412133912602	4.75840586182589	4.70420577161529	4.88529528385296	-0.806473479463755	0.0322906828437256	0.218389265875049
Merged-chr9-64794103-2	chr9	64793603	64794603	+	712.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-16908.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	3.71605959425169	3.34972711836023	3.55902060137003	3.50547392290267	3.38199270014603	3.57636374150873	-0.23701925717226	0.688348561291743	0.917216444209858
Merged-chr15-101264539-3	chr15	101264093	101265093	+	797.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2253.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.92754711908308	3.912563864013	4.32024180483825	4.27285090518621	4.14324314730876	4.8558768726871	1.05520738025798	0.0462604914061573	0.272165945621405
Merged-chr11-74833921-2	chr11	74833421	74834421	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2997.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	4.60549054092435	4.33747069256313	4.71032273833976	4.49102011860099	4.58605556666532	4.84686068939809	0.216352823718759	0.620582638339787	0.890223949159159
Merged-chr6-71478267-1	chr6	71477767	71478767	+	771.5	f0_balb.idr	Intergenic	Intergenic	-15610.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	4.24277660039427	4.16370375644608	4.17234995736621	4.66858664324966	4.74286097788386	4.67996659344761	1.28713400272617	0.00302608425509878	0.0424075752663284
Merged-chr11-4199029-4	chr11	4198554	4199554	+	904.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134023, intron 1 of 8)	MIRc|SINE|MIR	12221.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	4.00940936633531	3.86914974510559	3.68192568073528	3.7616195289641	3.79685533484472	3.80698069129909	-0.253298394382316	0.632369033871937	0.89551362251836
Merged-chr19-28963978-4	chr19	28963486	28964486	+	976.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028922)	promoter-TSS (NM_028922)	66.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	5.4402603520758	5.30081110550389	5.55442565849399	5.48636089215766	5.21123032333873	5.50653037375402	-0.0588770238892201	0.865055105881321	0.96857203435794
Merged-chr5-18015388-2	chr5	18014888	18015888	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 6 of 7)	intron (NM_001081143, intron 6 of 7)	52818.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	3.20616919065769	3.38727135245306	3.63521103208481	3.43354509887705	3.33632540256991	3.5011387187544	0.0299862405328766	0.960875066132911	0.990386809359123
Merged-chr5-114628307-2	chr5	114627807	114628807	+	873.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_022017, intron 12 of 15)	RSINE1|SINE|B4	30114.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	3.62241390609065	3.82048901174758	3.81153020880596	4.75835170003547	4.58870035485257	4.47454529182834	2.49618451818453	9.85993471757346e-07	5.36225782993368e-05
Merged-chr3-144695470-4	chr3	144694984	144695984	+	911.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	24851.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.84174213412675	5.78090181346798	5.7567342739407	6.11471749585887	6.21449760083025	5.8713006439126	0.507608420829979	0.0934011153764547	0.407088157154892
Merged-chr15-86202065-4	chr15	86201503	86202503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12456.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	8.68318871719738	8.66903517924262	8.51284935704197	8.29730608507715	8.54719089259681	8.07796037765612	-0.41123256811934	0.0727278337505918	0.354263996646718
Merged-chr12-39039012-3	chr12	39038505	39039505	+	935.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	255294.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	3.71679928437296	4.06417179674153	4.15253475291304	3.67888657447149	3.86900199521372	4.13286538353522	-0.260357513794967	0.63363737575975	0.896059441151508
Merged-chr12-111158943-2	chr12	111158443	111159443	+	996.0	f1_balb.idr|f1_c57bl6.idr	TTS (NR_130987)	TTS (NR_130987)	-7427.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	2.88469141065979	2.83433995037079	2.55815069968623	2.9289181343651	2.66796289109061	3.01522012034352	0.528272344980362	0.501003326177217	0.835364873648088
Merged-chr19-6118067-4	chr19	6117620	6118620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133678, exon 1 of 2)	exon (NM_133678, exon 1 of 2)	466.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	6.92438650312684	7.10471710280431	7.16738827834945	6.95618634520099	6.78082921652851	6.84231829462352	-0.315997643673061	0.204326028871911	0.594870235483128
Merged-chr16-57552797-3	chr16	57552377	57553377	+	873.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	3635.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.9517888379237	6.13966368204649	6.22211179334085	6.07081193580016	6.1343638073982	6.35718073133127	0.140235665820632	0.632905744241016	0.895781348284166
Merged-chr4-149170818-4	chr4	149170330	149171330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4125.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	6.66420374711219	6.98350146722845	7.28144928833903	6.64060563911736	7.11758506253968	7.1602735951554	-0.00156343246326772	0.99587423535782	0.998961028701257
Merged-chr8-107150620-4	chr8	107150154	107151154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025558)	promoter-TSS (NM_025558)	-7.0	NM_025558	66427.0	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	6.12860323108899	6.53821963283323	6.10552056573717	6.82373594563797	6.79803929520573	6.46141474147923	0.688247256898221	0.0217533325217209	0.17079695337539
Merged-chr9-123925453-4	chr9	123924923	123925923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	43269.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	8.54177471930432	8.13634802998631	8.30483564997652	8.50403543754092	8.37573290482434	8.30514526276734	0.0822458776465045	0.715686189233764	0.926447967236454
Merged-chr18-11658391-5	chr18	11658080	11659080	+	799.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081223, intron 1 of 18)	B1_Mus2|SINE|Alu	1231.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	5.50513268250464	5.55998331070144	5.39043131818841	6.37051327246216	6.47984328077923	5.96981967874402	1.42391405497025	9.82950206602414e-06	0.000394566003729463
Merged-chr4-154898629-2	chr4	154898129	154899129	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025582, exon 2 of 7)	exon (NM_025582, exon 2 of 7)	414.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	5.47693267805433	5.57021078681232	5.97034496304974	5.37575115631781	5.14640226510821	5.7888639030563	-0.432941745966463	0.255338862124628	0.652445523881157
Merged-chr11-120579506-2	chr11	120579006	120580006	+	930.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133796, intron 5 of 5)	intron (NM_133796, intron 5 of 5)	2114.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	3.38194004569145	3.7142877690427	3.81296159132362	3.72522791096187	3.83781651677076	3.83293924853484	0.516795361495719	0.359100778265172	0.745343050659493
Merged-chr2-104495615-2	chr2	104495115	104496115	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1126.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	2.29735292787586	2.40107744191533	2.64018956970753	2.1837809324199	2.22872374483371	2.53453121613664	-0.827816577133454	0.349132481586976	1
Merged-chr11-100629694-4	chr11	100629216	100630216	+	827.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177790, intron 6 of 7)	intron (NM_177790, intron 6 of 7)	6761.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	3.32326898503665	3.3012215635099	3.30784258359119	3.66294018608441	3.71382135050528	3.60702723455431	1.32435754522698	0.0228204991666955	0.176309015288988
Merged-chr1-146967669-4	chr1	146967157	146968157	+	939.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	469970.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.31492274154958	4.53653169771436	4.60258353776816	4.45497693054648	4.34031167105165	4.66795240071917	-0.00263198779166255	0.995259389295299	0.998961028701257
Merged-chr11-95825755-2	chr11	95825255	95826255	+	898.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	1255.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	4.63338554369283	4.31897474089233	4.77920965869445	4.66146216519804	4.44232442831461	5.04329676445822	0.341253257451976	0.45948683750891	0.813687282570895
Merged-chr2-31773427-2	chr2	31772927	31773927	+	778.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	MTB_Mm-int|LTR|ERVL-MaLR	13254.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	5.55380103822357	5.80548555392053	5.65174697140786	5.43920373250049	5.42439290000119	5.45999716374774	-0.447842142454417	0.168921535326682	0.545531802905646
Merged-chr8-120812274-3	chr8	120811793	120812793	+	894.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73654.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.19786607195604	2.81787379719929	3.40388599183714	2.84899908015581	2.8562325819674	2.85715083560589	-1.41185507434296	0.0571897156860538	0.308454786810449
Merged-chr11-6679182-3	chr11	6678697	6679697	+	970.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18961.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	2.08018083925234	2.0744147585029	2.23597202790738	1.79309831940327	1.84498504570352	1.91403893052625	-2.62776896798293	0.0169902276500498	1
Merged-chr17-6749448-7	chr17	6748899	6749899	+	866.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	33381.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	3.48685977331866	3.47136501837599	3.44118123092288	3.62206589139405	3.2284298637771	3.34073726752279	-0.228489999425862	0.706988836517296	0.923161381966479
Merged-chr16-32430889-4	chr16	32430372	32431372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009981)	promoter-TSS (NM_009981)	-49.0	NM_009981	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	8.17159624561762	8.05979354827709	7.62789400773211	7.8495473498046	7.92615201306719	7.82107030901789	-0.162938984599443	0.505073877091526	0.837928144581384
Merged-chr13-41614707-3	chr13	41614202	41615202	+	591.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	8486.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.15474756614092	5.11711426688008	5.15262340416347	5.30403059192277	5.18331937063038	5.07894353916893	0.113566432551131	0.748962529512221	0.93711275444937
Merged-chr8-107574948-2	chr8	107574448	107575448	+	543.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	13534.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	2.84505399781414	2.83693915604546	2.95931906198597	3.13512773315712	2.92093500146504	3.14834616546494	0.897495884863903	0.19101167399484	0.577558823376959
Merged-chr2-151576235-4	chr2	151575691	151576691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	CpG	3568.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	5.73696768798555	6.1069566405994	6.34312955065062	6.08335948980895	6.13958510609681	5.84574074072645	-0.0694868083598913	0.832023082655177	0.960554106356966
Merged-chr18-65687158-5	chr18	65686557	65687557	+	797.899048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207255, exon 6 of 6)	exon (NM_207255, exon 6 of 6)	-11211.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.73588604319158	5.75947350033901	5.41511042885791	5.7109907819154	5.98383434201568	6.09761238329838	0.501580700895951	0.128355171876443	0.479211071095037
Merged-chr5-137307063-1	chr5	137306563	137307563	+	598.0	f1_balb.idr	exon (NM_031405, exon 2 of 20)	exon (NM_031405, exon 2 of 20)	611.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	7.18307499132881	7.23106565836398	7.15904841345878	6.89758421598228	6.99117108589839	7.13094231321087	-0.283480749615508	0.234924856776111	0.631024470284135
Merged-chr4-56059248-7	chr4	56058793	56059793	+	903.142883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-526818.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.0166139542673	5.32449646755869	5.25953521511447	6.09790245252552	6.21019925387163	5.84993039811211	1.6008239840784	1.8753637537883e-06	9.389005248208e-05
Merged-chr12-52304122-4	chr12	52303609	52304609	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029760, intron 9 of 10)	intron (NM_029760, intron 9 of 10)	176500.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	4.34982587674393	4.24419112923397	4.0482761165717	4.7322721614921	4.8577264751233	4.82931321709581	1.43286851502821	0.00130241146258145	0.0221601095627989
Merged-chr10-80673901-2	chr10	80673406	80674406	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 2 of 13)	ID|SINE|ID	2387.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	2.88676833294136	2.92009582516999	2.92139237191209	2.74457462685813	2.9257905817303	2.74583100576226	-0.471984679733834	0.510316779247447	0.840873669603184
Merged-chr12-52390451-4	chr12	52389957	52390957	+	788.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90152.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.23688405284629	3.50764945001963	3.1782522383465	3.3638865143701	3.06746945565782	3.58264715819239	0.115472349527757	0.862244009823338	0.967996224966109
Merged-chr3-96240374-4	chr3	96239938	96240938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013549).2	promoter-TSS (NM_013549).2	-64.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	6.25710783363485	6.51525383366199	6.32766688045782	6.01454359555929	6.4176985830077	6.26886948657545	-0.204633849897931	0.487474578627988	0.828458303762018
Merged-chr2-3425952-2	chr2	3425452	3426452	+	582.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302674, intron 2 of 13)	B3|SINE|B2	1821.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	4.88500551541221	5.04806990408804	5.15465991342844	5.1032929298821	4.731459282994	5.39460791577663	0.130869162690682	0.749903923091324	0.937463855381525
Merged-chr13-54828756-3	chr13	54828265	54829265	+	697.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39360.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	3.61187536092658	3.44768668309179	3.84084691217826	4.09313328620873	4.79233234443112	4.5476356226754	2.67707876415991	2.65363547510394e-06	0.000127484815596102
Merged-chr5-149245634-1	chr5	149245134	149246134	+	665.0	f0_balb.idr	Intergenic	Intergenic	-19370.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	6.45983902350119	6.87121378830691	6.50015360390327	6.69750194125513	6.83241623133812	6.6641527785084	0.166651708923045	0.548228307526279	0.859611076801904
Merged-chr11-20632857-1	chr11	20632357	20633357	+	618.0	f0_c57.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	880.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	7.60789339250497	7.4657205080906	7.31551449901332	7.39691528617268	7.57228844235289	7.51206575071122	0.0335447831019178	0.885808777954132	0.973636976161493
Merged-chr8-125559276-3	chr8	125558815	125559815	+	756.833313	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	10548.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.39415677363139	5.93119971024065	6.00161760440787	6.11523032141331	6.17559175252483	6.49822696881369	0.226272433417924	0.475328311625153	0.821892651047458
Merged-chr12-3695892-3	chr12	3695378	3696378	+	909.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-111102.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.63084433948708	5.70431123986509	5.77765933715883	6.30286154648229	6.551165295824	5.8928347858789	1.0206575088866	0.00166228912415809	0.0267827693668474
Merged-chr16-17891179-1	chr16	17890679	17891679	+	734.0	f0_balb.idr	intron (NM_001109750, intron 1 of 9)	CpG	549.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	6.69039048508119	7.00976600361722	6.79928086244873	6.80333581794718	6.64287731844612	6.42913816451488	-0.316746249346661	0.246870383586523	0.643986348521616
Merged-chr11-86807147-3	chr11	86806655	86807655	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026191, intron 1 of 17)	intron (NM_026191, intron 1 of 17)	505.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	6.70884758308691	6.65691561475658	6.63699617742983	6.42543815385503	6.54395631678119	6.31154772257077	-0.367975656108902	0.162537617345574	0.535984273380581
Merged-chr2-11205197-4	chr2	11204701	11205701	+	851.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	MTD|LTR|ERVL-MaLR	32819.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	2.79314854359555	3.01290749821615	3.07976502718948	3.15343069174791	3.15838705336801	3.09344440797793	0.785084641113749	0.247110621813849	0.644145276280485
Merged-chr2-3579044-2	chr2	3578544	3579544	+	561.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	65979.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	4.42272051705492	4.31621428620409	4.39260521262563	4.33019887913455	4.84858082375673	4.58750283228251	0.593180813732909	0.18932109890526	0.575075019081842
Merged-chr11-102697737-4	chr11	102697206	102698206	+	999.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025918)	promoter-TSS (NM_025918)	19.0	NM_025918	52715.0	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	4.87025240428239	4.93061720901488	5.51785916724989	6.06489011505688	5.96711731027566	5.33682434230137	1.34847200004889	0.00100951916034331	0.018150404125723
Merged-chr15-55196570-4	chr15	55196088	55197088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037937, intron 4 of 8)	intron (NM_001037937, intron 4 of 8)	63152.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	4.46719730706176	4.51637664968388	4.74311410510103	3.99295141350707	4.1748097210676	4.62752480664458	-0.752520080546431	0.122496676173154	0.468221022142304
Merged-chr10-120366391-6	chr10	120366042	120367042	+	821.930542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-22981.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	4.35342286768694	4.39507937702641	4.2915148779018	4.32935010076918	4.16507823677897	4.44565771800295	-0.110235104705884	0.807262511249107	0.95453117889869
Merged-chr3-95626147-2	chr3	95625647	95626647	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	1167.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	5.54650889646936	5.41804243998796	5.31784659839351	5.81529608718632	5.92968738130405	5.54082499669775	0.64362200773486	0.0538447579948832	0.297603235876397
Merged-chr19-11411744-3	chr19	11411251	11412251	+	875.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029499, intron 1 of 6)	intron (NM_029499, intron 1 of 6)	4090.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	3.27470565697486	3.32735439839913	3.18620756802367	3.29021226310562	3.27746471720858	3.63641662331273	0.535720912936828	0.392141985173791	0.770936216924513
Merged-chr6-54160844-4	chr6	54160332	54161332	+	979.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-104026.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.66885194219797	3.52523932432743	3.83611236130709	3.02688394110667	3.16934846020227	3.40440136275156	-1.88761278503967	0.00393766517132585	0.0513212406994601
Merged-chr8-69023533-4	chr8	69023034	69024034	+	831.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-65202.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	3.68295703872759	3.37361404110606	3.90488540825621	3.88232964638433	4.05250148046461	4.15478216665284	1.17657615379641	0.0377650778087804	0.240259698318908
Merged-chr16-58523181-4	chr16	58522666	58523666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018784, exon 1 of 11)	5' UTR (NM_018784, exon 1 of 11)	260.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.91592278626367	7.39622454239327	6.93155346825828	6.53827945961515	6.41503282557159	6.72254537096104	-0.856557334946583	0.00254846540440026	0.0372545167549784
Merged-chr2-130491003-4	chr2	130490516	130491516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	40738.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	7.66983189319152	7.27864385352989	7.35732215485508	6.89054797300417	6.82536365897787	6.94673058389783	-0.849775112941685	0.000761775806135736	0.0146185058295531
Merged-chr3-8926142-2	chr3	8925642	8926642	+	800.571411	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001025261)	TTS (NM_001025261)	-2285.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	3.97694304290918	3.80296103412957	4.16230537587812	3.95890917047869	3.71881717788231	4.43012382525044	0.225013181225007	0.685942621955215	0.916538830253462
Merged-chr10-80146237-2	chr10	80145737	80146737	+	971.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025313)	TTS (NM_025313)	-2035.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	3.43193983540196	3.65452463563626	3.67247879356112	3.35497723727106	3.77263498761514	3.6910588045587	0.115494302952942	0.844904228072682	0.963760118842549
Merged-chr11-95260213-1	chr11	95259713	95260713	+	625.0	f1_balb.idr	Intergenic	Intergenic	-1316.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	2.14258008913901	2.10971562935851	2.43573761157293	2.09730746250638	1.97350797807118	2.12778879776399	-1.26039112091138	0.177853673520302	1
Merged-chr19-34244236-3	chr19	34243767	34244767	+	908.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 7 of 8)	intron (NM_007392, intron 7 of 8)	11106.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	4.15756339813907	4.16954081247429	4.26282743505192	5.44000832107849	5.45489982558359	5.16152785063287	2.77672641862581	6.71366764840179e-11	9.24885525973868e-09
Merged-chr2-131177606-2	chr2	131177106	131178106	+	567.75	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007682, exon 1 of 1)	3' UTR (NM_007682, exon 1 of 1)	2461.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	4.20846914528805	4.08092065973781	4.69990919071716	3.98709825745411	4.39017954804251	4.72957227645316	0.123718481393954	0.816976514556836	0.956754861188725
Merged-chr8-105938017-4	chr8	105937434	105938434	+	988.4027710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013640, intron 1 of 7)	intron (NM_013640, intron 1 of 7)	458.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	7.01198352469268	7.14533684152122	7.38393036778396	7.50603252518436	7.93177300371759	7.36504499172222	0.662664932226243	0.0148699026992937	0.13180940277009
Merged-chr1-93478924-4	chr1	93478414	93479414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	3.0	NM_133808	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	8.47764474373602	8.3363229523146	8.29237813288173	8.29514740626954	8.37626536862817	8.26026810385587	-0.0835019608534586	0.68502325751565	0.916088073421675
Merged-chr19-53904033-4	chr19	53903509	53904509	+	960.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168491, intron 1 of 11)	CpG	658.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	6.89715969219869	6.92304241774291	6.79232618070493	7.05051364524036	6.85590325945423	6.67287150368629	-0.00149503260795281	0.995373784168386	0.998961028701257
Merged-chr17-65611639-2	chr17	65611139	65612139	+	900.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	1916.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.35949480674835	4.42776429281537	4.25424857701535	4.32376959045563	4.20323823247698	4.07911872605333	-0.386687644930985	0.401390513652242	0.777514243876891
Merged-chr2-173769375-4	chr2	173768870	173769870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31799.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	5.50842092855701	5.78987671790649	5.87534354045313	5.8218443039223	5.79954636517975	6.06898734443077	0.299530557146139	0.351605660456421	0.739403630741215
Merged-chr2-23067751-2	chr2	23067251	23068251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-450.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	6.93293852567559	6.98408792537729	7.10120142799639	6.99603755674857	7.05452302523359	6.96225845233125	0.0068158296773998	0.97736242056601	0.994771164142869
Merged-chr10-67190445-3	chr10	67189955	67190955	+	792.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207221, intron 3 of 25)	B3|SINE|B2	4705.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	3.64971253268942	3.71396025863771	3.71039291185925	3.97328536367519	3.65240246005311	4.02551393231728	0.630175956328083	0.24503247443684	0.642381314494918
Merged-chr6-42299574-4	chr6	42299073	42300073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013491, exon 10 of 23)	exon (NM_013491, exon 10 of 23)	12888.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	4.33740869304798	3.89395865719604	3.98967989893434	3.90292326819938	3.94765527329831	4.1068996915612	-0.318111414591459	0.536892802055331	0.854215768737235
Merged-chr10-44460295-4	chr10	44459802	44460802	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1554.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.14231650485353	4.44155822537905	4.82897414485275	5.07265330315128	4.899465489891	5.10714274779077	0.403717352474183	0.352225861861943	0.739888459678721
Merged-chr17-27046811-4	chr17	27046256	27047256	+	790.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10548.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	4.23804853783121	4.5019747773439	4.02070477113538	4.13543916387239	3.61400531926231	3.93584997309062	-1.05838290406891	0.0523173477551941	0.292418396350866
Merged-chr18-46574403-4	chr18	46573912	46574912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173394, exon 1 of 3)	5' UTR (NM_173394, exon 1 of 3)	121.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	6.77602490340729	7.06610966026718	7.10536189013202	7.13256399309893	7.15520934217982	6.8624025904103	0.117409830787902	0.65159457704807	0.902863925113916
Merged-chr2-165927248-2	chr2	165926748	165927748	+	783.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-42410.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.45988174721248	5.31902403418433	5.49334636773845	5.23874601334929	4.60767629163334	4.7829837812633	-1.07542311625611	0.00795897081618135	0.0857725739765338
Merged-chr12-81780760-3	chr12	81780269	81781269	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177395, exon 1 of 8)	exon (NM_177395, exon 1 of 8)	401.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	4.28322777324969	3.81276192916646	4.02271773261848	4.04689626627202	3.58490296911741	3.89397642732713	-0.616281619796395	0.267403494596799	0.664678416083957
Merged-chr19-45650148-4	chr19	45649603	45650603	+	906.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	B2_Mm2|SINE|B2	10090.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.91947629974721	6.46756079309871	6.20541618478705	5.21519507752069	5.11252947056448	5.40966447295721	-1.80251641313569	1.73564342040061e-07	1.15906434771022e-05
Merged-chr18-46152606-4	chr18	46152085	46153085	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46233.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	3.19811607542164	3.11651236172067	3.10287534701192	3.43619664652068	3.15611516834935	3.35094157103168	0.723494363358561	0.255739125715076	0.652762828432113
Merged-chr4-44756221-4	chr4	44755713	44756713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	-346.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	6.67724347626854	6.43778175584705	6.4713070817456	6.87724812935333	7.04815140918905	6.63860338739452	0.533679023447711	0.0507822718040033	0.287015431226694
Merged-chr7-90136996-4	chr7	90136498	90137498	+	980.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360867, intron 1 of 19)	B2_Mm1t|SINE|B2	6785.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	6.04259113332553	6.38067444076987	6.19162978940214	6.08887739819274	6.09172698165401	5.93570657487352	-0.286844352091756	0.331820656998372	0.723100155239781
Merged-chr17-88530704-2	chr17	88530207	88531207	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 1 of 21)	intron (NM_028658, intron 1 of 21)	583.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	4.89926618837298	4.63015933657806	4.96950978310274	4.9471396215486	4.74750198637522	4.89270883265801	0.0602550344825519	0.880107051205268	0.972432510711849
Merged-chr6-48445517-4	chr6	48445054	48446054	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	271.0	NM_020589	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	5.29793529299819	5.57820955525388	6.04365784742337	5.87220066752781	5.69233835480327	6.02061767231682	0.357562930010808	0.325652244360131	0.718159390122652
Merged-chr4-75297665-4	chr4	75297175	75298175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19383.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.74370442766816	4.16467082229792	4.35846638160394	4.55662735338769	4.37528499057674	4.58635177034055	1.06381698464975	0.0351927880851614	0.230195858107862
Merged-chr8-128595123-4	chr8	128594611	128595611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90543.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.52786693712066	6.79695945826817	6.37060627451784	6.24734994033077	6.51330934837963	6.22448387745046	-0.390570264664233	0.181288566733072	0.563596452857293
Merged-chr1-162548554-4	chr1	162548049	162549049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-204.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	7.24347617099547	7.89150533840124	7.58527252982223	7.55018016899019	8.05795352320735	7.65151687392427	0.251680180331514	0.38002394290095	0.762279329390436
Merged-chr10-121519885-2	chr10	121519385	121520385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43635.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	2.88782075487259	2.69614005186844	2.609739449805	2.73296365535434	2.91172951357882	2.87336400346544	0.524446573759429	0.484255113345651	0.826755140042123
Merged-chr5-137075758-4	chr5	137075247	137076247	+	811.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3475.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	4.36360572098494	4.3961045035923	4.41785962569585	4.7847281010555	4.61359639760928	4.14658421894748	0.400023028101318	0.392415227471465	0.771172125304963
Merged-chr13-37893219-3	chr13	37892719	37893719	+	948.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039188, intron 3 of 9)	intron (NM_001039188, intron 3 of 9)	4348.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.24170946687921	4.06028524673472	4.05556865481832	3.95637354167906	4.0355864802021	3.97650401071319	-0.387609983076202	0.426527323118755	0.793840707522572
Merged-chr6-87451636-3	chr6	87451119	87452119	+	909.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22625.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	2.81948007928954	2.90636008744758	2.85022141863232	2.76508867134927	2.47851621560598	2.80150988567633	-0.939385131278973	0.222328598751047	0.617247273860635
Merged-chr14-27123714-4	chr14	27123222	27124222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20271.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.02197885121411	6.03350221492942	5.86685734189287	5.82020531822245	5.83619819867671	5.47777287835411	-0.437989989700865	0.166153467863415	0.541298216748719
Merged-chr19-12833773-4	chr19	12833271	12834271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361971)	TTS (NM_001361971)	-28006.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	7.16787991165204	7.44216464960276	6.91379987947809	6.61370726307027	7.03585034337384	6.78981801892785	-0.561349408565178	0.0480425309025854	0.277875914871564
Merged-chr4-150237134-4	chr4	150236659	150237659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025388).2	promoter-TSS (NM_001025388).2	-38.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	8.06695017778158	8.24247872400955	8.26292279791237	8.07708794213071	8.18317855620588	7.88829266897497	-0.184620546640264	0.402570416111862	0.778097077441018
Merged-chr13-23583261-9	chr13	23582834	23583834	+	862.5031130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178194)	TTS (NM_178194)	1732.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	5.77586628907769	5.88678053892839	5.78464519059802	5.90657324112183	6.05748365364175	6.18652091381008	0.405813837235326	0.17597120050246	0.556082959363853
Merged-chr11-87591206-3	chr11	87590695	87591695	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-971.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	7.47303393955538	7.70333951130452	7.28129848580313	7.44723898584677	7.89002329404431	7.29058858557603	0.110437192319884	0.69076228601552	0.917977377427794
Merged-chr5-43786773-4	chr5	43786267	43787267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4618.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.39165343366878	5.09643142775651	5.47076607145171	4.97042803839083	5.07929930325669	5.24093549703212	-0.462554689393361	0.210694019412002	0.602954361763681
Merged-chr13-112084641-4	chr13	112084150	112085150	+	970.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-203801.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	2.98050863936043	2.89566469408768	3.07252928461323	2.54241049051872	2.62310815748588	3.25051913675826	-0.510647540333138	0.708456179803682	0.923708659245088
Merged-chr14-55105744-4	chr14	55105216	55106216	+	767.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007455, intron 2 of 21)	PB1D9|SINE|Alu	877.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	5.51278409543388	5.27063404354166	5.48334697108735	5.52285953284315	5.64734711658028	5.51728946079251	0.278605417905471	0.401476563216692	0.777568046382993
Merged-chr3-20154992-4	chr3	20154499	20155499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013755, exon 1 of 7)	exon (NM_013755, exon 1 of 7)	117.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	5.96503612372103	6.20490483742875	5.89007144834929	5.78161873854418	5.39522235161352	5.51695592807993	-0.830622841240618	0.0112746444787896	0.109467983406199
Merged-chr11-79993070-4	chr11	79992583	79993583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163018)	promoter-TSS (NM_001163018)	-23.0	NM_001163018	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	6.87992387892926	6.78697962303295	6.62961410752613	6.82253273957159	6.57188863485681	6.70516369047987	-0.118224947907838	0.650830243707875	0.902681635626215
Merged-chr10-80931137-2	chr10	80930637	80931637	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008655, exon 3 of 4)	exon (NM_008655, exon 3 of 4)	1046.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	4.90890055996832	4.61117515204422	4.69138113224165	5.39456379032935	5.0293520998766	5.13418966783191	0.967075377269588	0.0149858264559196	0.132653260398315
Merged-chr2-71047377-3	chr2	71046853	71047853	+	814.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	8253.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	4.32744217861705	4.55299892782965	4.44532970259325	4.15965102671128	4.38976759629784	4.70595483605157	-0.0428388761078443	0.926539994387155	0.98354965685994
Merged-chr8-19785318-2	chr8	19784818	19785818	+	854.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001270553, intron 6 of 9)	intron (NM_001270553, intron 6 of 9)	55742.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	7.24999734798311	7.44949979990877	6.96237240813015	6.69219874402267	6.26254233024013	6.15257979871759	-1.31464308754332	1.15136799299997e-05	0.00045190107529029
Merged-chr17-48262611-2	chr17	48262111	48263111	+	643.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-1684.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	5.6772843687983	5.63632389426691	6.34586351316016	5.63945629369475	5.57887392864667	5.82688046678756	-0.424444501825258	0.243602675379889	0.64079702241432
Merged-chr15-102459111-4	chr15	102458621	102459621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-49.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	6.77403463056475	7.10577523322846	7.11269851502536	6.99338899395135	7.26509366803211	7.17038641210213	0.221754757951009	0.391003041432948	0.770112153342334
Merged-chr9-59544449-1	chr9	59543949	59544949	+	983.0	f0_balb.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	4909.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	7.47321729359502	7.225033410674	7.24520178944469	7.28076189083588	7.43695775050982	7.19367699233452	-0.0120900239012005	0.960147184285634	0.990335445597503
Merged-chr14-63105248-2	chr14	63104709	63105709	+	847.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17253.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	5.6617653650585	5.73756909484122	5.98105119571432	5.58596146988487	5.53978276103471	5.48495091889206	-0.464109555954216	0.150179753780946	0.517032436286358
Merged-chr14-54411727-2	chr14	54411227	54412227	+	622.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253679, intron 2 of 10)	intron (NM_001253679, intron 2 of 10)	-2255.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	2.73559498639364	2.72848122787088	3.12263183037008	2.86051112967789	2.76222688435577	2.78976731380435	-0.318082318291846	0.666035169628009	0.907960570164785
Merged-chr16-33573933-4	chr16	33573430	33574430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	MIR3|SINE|MIR	55335.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	6.16086229708619	6.17179616471843	5.98960948137722	6.19222842433256	6.42956314667269	6.30940693496324	0.338618799222672	0.233859237533468	0.630121355137759
Merged-chr5-99271757-2	chr5	99271257	99272257	+	647.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18830.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.62339206575806	3.5911370050281	3.60781202249448	3.14591023941578	3.07869404317616	3.23610946403891	-1.90189048301543	0.0026070169569522	0.0378444987707744
Merged-chr4-107922155-3	chr4	107921658	107922658	+	804.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1431.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	5.9987993444314	5.57236255114522	5.22095064399419	5.95446657693147	5.85929752492035	5.49397309170878	0.254305617504798	0.506715062207819	0.838542828803423
Merged-chr2-156863975-4	chr2	156863482	156864482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026124, intron 1 of 3)	intron (NM_026124, intron 1 of 3)	860.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	8.3814987783792	8.35435309745013	8.34932061393704	8.24426450907021	8.46292425899339	8.20517618089412	-0.0666427363403423	0.751080716620075	0.937718261890661
Merged-chr11-98149733-4	chr11	98149265	98150265	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-149.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	7.46157877483259	7.31501277675356	7.75976298675642	7.65953082285291	7.4594747653273	7.68997814357516	0.123977953758763	0.616675853435301	0.888421011873208
Merged-chr3-94886927-4	chr3	94886443	94887443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008945)	promoter-TSS (NM_008945)	15.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	7.04785028877325	7.42460619854647	7.09694172351672	7.20910733184606	7.34656632868349	7.0757184833079	0.022587366321722	0.930019496494424	0.984367444275931
Merged-chr9-95180665-4	chr9	95180171	95181171	+	883.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	226599.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	3.74113997014625	3.51250955385666	3.56700912378442	3.09863942385494	2.98687650785629	3.42403980431776	-1.80652409477188	0.00668062539097468	0.0755171141872328
Merged-chr13-23576167-3	chr13	23575669	23576669	+	999.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_178204)	TTS (NM_178204)	406.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	6.46820200111562	6.10010372146848	6.41410095656536	6.41578859332562	6.64541130113121	6.72282070856655	0.42960916687663	0.134023904344294	0.489430895003259
Merged-chr9-99109800-4	chr9	99109309	99110309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30402.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.5133641982472	7.6461299848552	7.31206325359383	7.39113334350979	7.76716455918047	7.3807703067861	0.0449772081081324	0.859680987099824	0.967423539737178
Merged-chr15-81022623-2	chr15	81022128	81023128	+	566.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 5 of 13)	intron (NM_001082536, intron 5 of 13)	44863.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	4.45823546373773	4.34946090007337	4.42939462018671	4.49088894124003	4.09051598688702	4.61636510643067	-0.0144879390296486	0.975308519367538	0.994454548709104
Merged-chr12-85345113-4	chr12	85344588	85345588	+	947.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5726.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	7.94324929019184	8.05300235509367	7.91145383132827	8.14869856646712	8.61320389858784	7.99894284087597	0.448277347455208	0.0762041714286412	0.363369438179621
Merged-chr12-75733876-12	chr12	75733387	75734387	+	829.145813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	1842.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	7.13753595231448	7.18156750216371	7.03763707698486	7.02303128294125	7.38577084851809	6.88135471435972	0.00686270767923568	0.979335692010247	0.995221944653849
Merged-chr10-121488836-4	chr10	121488331	121489331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12581.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.97409568348585	7.06279164151178	7.01902223849793	6.4648764085378	6.81497999851552	6.75001326718838	-0.51204438445045	0.0482422064098131	0.278450160304365
Merged-chr15-76783823-4	chr15	76783379	76784379	+	801.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	34291.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	5.25900586587901	5.24023679244053	4.92570627437901	4.75731710746172	4.64924065931874	5.25830578569814	-0.546762088149913	0.189938880333317	0.576068319838696
Merged-chr17-71287625-6	chr17	71287069	71288069	+	973.2777710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357337, intron 2 of 7)	(CCA)n|Simple_repeat|Simple_repeat	23442.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	8.0135031491138	7.9209525293176	7.42902242087175	7.0646960492568	6.92250263932666	6.51008089268145	-1.41377069708175	1.3237253988217e-06	6.94480094483959e-05
Merged-chr11-73110121-3	chr11	73109681	73110681	+	670.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	19586.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	2.95174692763749	2.52926307194579	2.72451191911092	2.54729034805055	2.35806571771135	2.60923391857479	-1.41670079191845	0.0893554027100362	1
Merged-chr15-73633873-2	chr15	73633373	73634373	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9129.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	4.64892892528514	4.3597227454431	5.03702096285832	4.57507701509537	4.45625564665206	4.7667611302904	-0.241356372084682	0.599156458341842	0.880924908462167
Merged-chr10-56228831-4	chr10	56228327	56229327	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033385)	promoter-TSS (NM_001033385)	-138.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	5.72551039651503	5.91043908584424	6.01917665746261	5.9030934052302	5.86952364817996	6.12200235439641	0.135898285517286	0.657892097653609	0.904859102731141
Merged-chr5-123371264-2	chr5	123370764	123371764	+	633.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-23534.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	4.29706270514334	4.11383460639959	3.88018975106735	4.19891830646228	4.3410457516278	4.20680964592033	0.376180594608246	0.443437636195792	0.803800173379074
Merged-chr9-35265361-4	chr9	35264855	35265855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286604, intron 2 of 9)	intron (NM_001286604, intron 2 of 9)	2450.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	4.73427523434052	5.08110725723053	5.36761767789538	4.66140157704612	5.19830051869563	5.34607664515436	0.0399400524079243	0.927791452848124	0.983698457021454
Merged-chr4-8689405-3	chr4	8688897	8689897	+	586.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1009.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.92842114421042	3.17458213730288	3.22480282718302	3.14497453592265	2.80690203890585	3.24108814194134	-0.179502706655277	0.798756272562001	0.952063885260145
Merged-chr16-11461723-4	chr16	11461218	11462218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	56070.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	7.88059883606305	7.99861052319653	7.6710698750442	7.75367711359881	7.98222668808092	7.58256592492636	-0.101865249160408	0.67381689987706	0.911654130589777
Merged-chr8-66491976-3	chr8	66491463	66492463	+	814.122253	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5433.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	2.91993496332062	2.74454820827094	2.96596426436484	2.97878255879596	3.1303178266872	3.15427115938461	1.00772148361509	0.144928883630237	0.507831616184637
Merged-chr11-48788832-4	chr11	48788334	48789334	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11526.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	6.75816737728528	6.67545839142878	6.48476862576967	7.28598978832567	7.11096265092805	6.89655374946854	0.709485045319679	0.00731853175224471	0.0807532674765651
Merged-chr15-6260500-4	chr15	6259996	6260996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39293.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.2845472745154	6.20414889920024	6.40999881311653	5.73099663936606	6.0199293764725	6.05581842641667	-0.603018312435118	0.0423231567975274	0.257824528209141
Merged-chr2-129302133-2	chr2	129301672	129302672	+	719.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	4802.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	4.66731660148955	4.37567048131727	5.40448686263863	4.97471499652081	5.05234154694817	5.15486707260211	0.378675983945413	0.429190031897865	0.795655168027537
Merged-chr11-105901710-4	chr11	105901201	105902201	+	976.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181071, intron 17 of 25)	intron (NM_181071, intron 17 of 25)	42786.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	5.50465215241664	5.55441226680382	4.53878716649153	4.28067482620741	4.2618611107482	4.19221222892318	-2.4174478868556	1.55219872627091e-06	7.95291573987374e-05
Merged-chr5-117890843-4	chr5	117890310	117891310	+	980.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	23971.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.49413261338445	6.40926248440681	6.99324711045027	6.37852927890619	6.40798171984884	6.6336263639929	-0.279733655350536	0.353997337031723	0.741128482783203
Merged-chr15-58623642-3	chr15	58623131	58624131	+	741.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199796.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.9149208084412	4.42107104282292	4.63566826111685	4.33383888817432	4.62951800142919	4.66225713626289	-0.301592422260888	0.502922844910816	0.836691193058519
Merged-chr14-17954235-4	chr14	17953726	17954726	+	845.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-27418.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.81950638934156	4.78202846935091	4.98399920348302	4.55525394178728	4.43416401785186	4.98176931756838	-0.45321848000065	0.29086020190396	0.688664305177637
Merged-chr12-111693463-4	chr12	111693026	111694026	+	777.229187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15421.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	6.06378740679116	6.3330033451792	6.16607773113504	6.23537183766727	6.69145297489255	6.01997089455805	0.280030996829872	0.387066790992962	0.767450349932227
Merged-chr3-86110253-4	chr3	86109750	86110750	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082414, intron 7 of 14)	intron (NM_001082414, intron 7 of 14)	25816.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	4.02190354632208	4.5036467307082	4.26279646473213	4.47709134446109	4.67441478736239	4.6310306257972	0.796392763011786	0.0882743774136592	0.394369631991182
Merged-chr2-130424309-4	chr2	130423797	130424797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	-9.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	8.56814867798932	8.73958992144305	8.51926861674659	8.24171739940408	8.45468954196636	8.39764358237589	-0.342001461794332	0.103946117641834	0.429882849586243
Merged-chr13-67108697-4	chr13	67108192	67109192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	5336.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	6.63180036828654	7.14072292957714	6.89120643855608	6.9695700204399	6.95645743631817	6.56052225540875	-0.0873541511653024	0.762550391565794	0.941580616163453
Merged-chr9-84028346-2	chr9	84027846	84028846	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_199195, intron 8 of 10)	intron (NM_199195, intron 8 of 10)	79565.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	3.28005541138963	3.42222611177881	3.74139572246201	3.27457948058461	3.24628420826576	3.61868735638984	-0.392290464021434	0.535021355412039	0.853375830335747
Merged-chr8-94377221-4	chr8	94376713	94377713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9216.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	5.69341016493887	5.14984811304182	5.68032188262798	5.63630597953049	5.35266872577197	5.55615980815781	-0.0201718018795288	0.956153665559379	0.989807313282509
Merged-chr4-87761749-2	chr4	87761249	87762249	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	44574.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.30035671460084	3.27484779337869	3.73302751056003	3.65160409401371	3.03206173012558	3.50218229212083	-0.100258149352144	0.883159210944466	0.973347392063704
Merged-chr4-102584833-4	chr4	102584346	102585346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-2712.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.79135243984736	5.20008404091922	5.97319734428617	5.81896668589666	5.71905056403425	5.90001057867519	0.224644879288396	0.540108555522002	0.856319360692709
Merged-chr2-31295213-2	chr2	31294713	31295713	+	880.333374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019681, exon 8 of 8)	3' UTR (NM_019681, exon 8 of 8)	49290.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	1.69262974712781	1.76126827865585	1.91174816580158	1.46528939029599	1.41989747831216	1.50186896290719	-5.12745210877267	0.00052711056479422	1
Merged-chr3-30594354-2	chr3	30593854	30594854	+	987.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5516.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	2.84921959853767	3.17278812424609	3.05937274207894	3.05355928084396	2.93358360893976	3.07295881132747	-0.0763642735599084	0.911184362169358	0.980026994912141
Merged-chr15-36500000-4	chr15	36499495	36500495	+	860.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3204.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	3.30177459708151	2.92546602303333	3.31906877048864	2.96104286547615	3.0413509787804	3.28228857412295	-0.403815223713103	0.557583540013448	0.86426383512982
Merged-chr11-96400925-4	chr11	96400421	96401421	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35163.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	5.13367921135261	5.49091193310648	5.38909797128338	4.8050427195998	4.3748464247491	4.82623691802591	-1.4703643994123	0.000352845361588952	0.00796515378380181
Merged-chr2-71660828-4	chr2	71660336	71661336	+	837.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-58581.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	3.58189614459375	3.25987877938115	3.51802032009503	3.90370538347056	3.89092835665637	3.47425344949821	1.10561163012348	0.0669398600772082	0.338143673984297
Merged-chr8-90881040-4	chr8	90880531	90881531	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-51218.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.73136955656949	3.38260165671285	3.67747460788891	3.56941263855052	3.61350619734952	3.64367563495413	0.0167945599872575	0.976555165050169	0.994723308989508
Merged-chr18-80738364-4	chr18	80737855	80738855	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001201569, intron 28 of 29)	intron (NM_001201569, intron 28 of 29)	-25284.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.18228299419827	5.19890069003401	4.92782310286788	4.43044688738648	4.13963313046451	4.41833706752688	-1.89819982173359	8.78084511921278e-06	0.000357454286046701
Merged-chr1-132389800-2	chr1	132389300	132390300	+	816.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	518.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	4.16634453240131	3.76830215269862	4.63192879459473	3.93628014069536	3.73809213674796	4.287082918135	-0.64191948896594	0.269936351866217	0.666963156307406
Merged-chr7-130866419-6	chr7	130865963	130866963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133942, intron 1 of 9)	CpG	739.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	7.55414969030003	7.5316231366727	7.26359803414926	7.55428553199911	7.40597586501833	6.863081139398	-0.211212592897293	0.452908478981307	0.809478303333781
Merged-chr1-173459687-2	chr1	173459180	173460180	+	820.0	f0_balb.idr|f1_balb.idr	intron (NM_001013779, intron 5 of 8)	CT-rich|Low_complexity|Low_complexity	39076.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	3.11869738934484	3.41342451330938	3.2719699141329	2.81312530872104	2.80313574016087	3.05801845495527	-1.8410799968638	0.0102632215825845	0.102261063518583
Merged-chr8-85801565-4	chr8	85801053	85802053	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028007, intron 6 of 17)	B3|SINE|B2	39396.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	4.48921514049127	4.62703527731149	4.44489458029701	4.41145300518399	4.72271248111073	4.67690249811094	0.209747411311841	0.625317075948961	0.89246806537449
Merged-chr4-132039521-2	chr4	132039021	132040021	+	604.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	9557.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.59966695263413	7.41841879685561	7.56721476272169	7.49631693982789	7.76828601186855	7.7996406395064	0.241077354639135	0.301521208160845	0.698254339947333
Merged-chr4-135873937-4	chr4	135873439	135874439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-93.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	9.04390106986063	9.01825984799762	8.51350836652541	8.65814767564088	8.99847484912881	8.5407710302191	-0.183164070178872	0.471625389327518	0.820159785051917
Merged-chr17-56256680-4	chr17	56256172	56257172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-121.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	7.92931239463571	8.28948828601417	7.91108699601305	7.92174064939626	8.3984435093551	8.05845537413024	0.124196195663091	0.624744382200559	0.892200723368576
Merged-chr9-121314246-4	chr9	121313746	121314746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	16744.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	8.87416586341498	8.95214149103889	8.49562458889914	8.64644619587289	8.98437623420499	8.56723237345465	-0.0592263333689734	0.807143804994257	0.954472851360829
Merged-chr11-69661359-2	chr11	69660859	69661859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011900, intron 1 of 6)	B2_Mm2|SINE|B2	1290.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	4.04041608383679	4.24159740747371	4.04415288723912	3.91862567567302	4.10198728778842	4.29259554713775	-0.0249312627588421	0.959732914627403	0.990242512723989
Merged-chr7-16231578-1	chr7	16231078	16232078	+	616.0	f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-9546.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	2.97449752650666	3.09533692871364	3.32361596928226	2.90970496226672	2.64845052366447	3.12578252945189	-1.08209352378052	0.147850105569679	0.513107343244259
Merged-chr1-82316567-4	chr1	82316074	82317074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029777)	promoter-TSS (NM_029777)	-5.0	NM_029777	76867.0	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	7.43507407694153	7.85493937006712	7.56344230854985	7.41000160786346	7.59349355144506	7.38245046106992	-0.238522296255743	0.33514270068158	0.725351478491702
Merged-chr6-92214894-4	chr6	92214398	92215398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030081)	promoter-TSS (NM_030081)	-87.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	6.90308861545404	7.23911088911053	7.0256082550436	7.0633418485687	6.91976872652936	6.65989885031853	-0.25569213701762	0.338857233664111	0.728835613269201
Merged-chr5-104943098-1	chr5	104942598	104943598	+	628.0	f0_balb.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	39619.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	3.62401588015521	3.47585810387387	3.47473721866376	3.71973548525038	3.74327723001156	4.21898650223522	1.24870641108561	0.0312404016996141	0.213993836071956
Merged-chr9-90276392-4	chr9	90275900	90276900	+	979.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5631.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	6.50207969176783	6.5219656537898	6.94225395153116	7.05547884353464	6.94168121806805	6.9186410236436	0.489465014432606	0.0702892280398398	0.347284964475921
Merged-chr1-72284358-4	chr1	72283883	72284883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175564)	promoter-TSS (NM_175564)	10.0	NM_175564	271711.0	Mm.80318	NM_175564	ENSMUSG00000026188	Tmem169	A830020B06Rik	transmembrane protein 169	protein-coding	5.23447266846228	5.66483394437545	5.55722009649328	5.24952901007885	5.50682881164835	5.32596208381204	-0.244707982096916	0.494096308457375	0.831815174927983
Merged-chr1-170932336-3	chr1	170931831	170932831	+	733.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B1|LTR|ERVL	-4748.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	4.02964317450138	3.84038265600627	4.13448227083575	3.8940748780228	3.59106179384163	3.9744787714602	-0.562584815106871	0.293349152822907	0.690260627455699
Merged-chr1-65227882-4	chr1	65227378	65228378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	41193.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	5.25468548446294	5.23763240519243	5.28088656973469	5.03419611645187	5.38739994084781	5.49042577142809	0.118518794954975	0.742346049976845	0.935192080236037
Merged-chr11-70655072-4	chr11	70654561	70655561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-411.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	7.38699544449543	7.34746166199886	7.33448620390369	7.55954698081859	7.89487573932407	7.28682741885272	0.379582477992589	0.143699159773061	0.506028730682277
Merged-chr10-81429765-4	chr10	81429259	81430259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ZP3AR|Satellite|Satellite	-2586.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	8.15045365336618	7.70621831734244	7.60066858521296	7.80956145241463	7.95986499946075	7.73247545158859	-0.0111918624557861	0.96506822861876	0.991754834157637
Merged-chr18-24245160-2	chr18	24244660	24245660	+	964.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361200, intron 3 of 12)	RMER5|LTR|ERV1	39166.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	6.82548434886441	7.35079584558566	6.71769222391315	6.56313516715131	6.68898030198097	6.6080831453706	-0.59461445804602	0.0427339676302356	0.259209032579736
Merged-chr12-79813973-4	chr12	79813468	79814468	+	976.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009014, exon 11 of 11)	3' UTR (NM_009014, exon 11 of 11)	110765.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	5.41876152775486	5.05562976692265	5.46521378701418	5.79310940775188	5.76494787659571	5.58572733265006	0.769221266240618	0.0255229128528018	0.18941406819978
Merged-chr5-138118164-2	chr5	138117664	138118664	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001044704, intron 2 of 4)	RSINE1|SINE|B4	1259.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	4.26602392276471	4.12179034911078	4.279979392368	3.84753166017412	4.0405244538143	4.17112226385773	-0.569694066654068	0.242664240460115	0.639785480506262
Merged-chr19-11092285-4	chr19	11091812	11092812	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-11209.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	5.13341220318972	4.65946090852601	4.98476383283171	4.98396957047343	4.49224675263772	4.98029549016206	-0.24256378256024	0.577934259070229	0.872239383750968
Merged-chr10-19077916-1	chr10	19077416	19078416	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-62506.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.12498253461961	5.45522294064403	4.9711629825059	4.7266730719387	4.67468132904083	4.49180207781512	-1.2502147272245	0.00241200561242395	0.0357014090309337
Merged-chr1-152560313-2	chr1	152559813	152560813	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64904.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.70274673819257	4.93896645397846	5.04543419405992	4.81578137705271	4.8109149933955	5.20300647429181	0.104428215220086	0.796413260592151	0.951430675491237
Merged-chr4-132007364-4	chr4	132006863	132007863	+	949.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001128606, exon 2 of 18)	exon (NM_001128606, exon 2 of 18)	41715.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.65377245313505	7.40621359101307	7.38760488612356	7.54135527498038	7.82437732476734	7.53903529029232	0.227667956053305	0.346073750449931	0.734515828466387
Merged-chr6-3182971-4	chr6	3182432	3183432	+	901.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105587.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	3.48928157806515	3.58394436498485	3.36017748035978	2.94927078854226	2.89816253295184	3.26210681805591	-1.99355381904682	0.00404679678360775	0.0523760875362317
Merged-chr17-24414596-4	chr17	24414099	24415099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	-47.0	NM_001357626	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	7.53812493917871	7.664188605782	7.49019914834569	7.61230472841802	7.84929160345895	7.34014053839225	0.0863036123465282	0.729333764648474	0.930601789377265
Merged-chr6-72116856-3	chr6	72116332	72117332	+	827.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	6108.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.21938533523738	5.39080485699222	5.35199271199907	5.57872238221288	5.81676311250468	5.84814558867631	0.814081184233448	0.0138847028665089	0.126098925574817
Merged-chr2-24048791-3	chr2	24048291	24049291	+	743.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_080462, exon 2 of 7)	exon (NM_080462, exon 2 of 7)	588.0	NM_080462	140483.0	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	5.51914717107498	5.87409029780495	5.74340104313401	5.01242901508726	5.1895302108311	5.05455791101495	-1.22348065150705	0.000559769604426048	0.0114807269522018
Merged-chr17-6779804-2	chr17	6779304	6780304	+	990.0833130000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	2976.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	5.6984130343939	5.57746341000551	5.48318608282906	5.45541682034684	5.49885903109447	5.57486703013504	-0.165384705085011	0.609810668962338	0.885315715493415
Merged-chr9-22156304-2	chr9	22155804	22156804	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-542.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	4.55382048311896	4.76558502413401	4.91641689463377	4.77692735309045	4.48518152219772	5.04616447422484	0.0679499584820993	0.876029004504951	0.971162730906517
Merged-chr16-33346656-6	chr16	33346158	33347158	+	864.111084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	34078.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	6.33354277887191	6.35271945995996	6.26177502719363	6.90985516244305	7.08054445003241	6.52124585234337	0.87573634668123	0.00207176619747722	0.0317823602064315
Merged-chr10-63430093-4	chr10	63429595	63430595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-3.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	5.98187490717153	6.32865853852683	6.14970611357811	5.98606347145966	6.21245579633196	6.05673650134354	-0.117654877114947	0.694002894453418	0.919141313420726
Merged-chr2-5844425-2	chr2	5843925	5844925	+	588.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016918)	promoter-TSS (NM_016918)	-609.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.55660088523326	5.70686935091679	5.63015292330627	5.50758445215526	5.55663207051189	5.74384083614063	-0.0635891989652912	0.842960538807435	0.963230717210186
Merged-chr2-118016002-2	chr2	118015502	118016502	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	ORR1D2|LTR|ERVL-MaLR	95200.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	3.16902551025478	3.05561245655329	3.00998747385211	2.87178317652422	2.58489173186188	3.08282735900578	-1.0813310561107	0.157870500280709	0.529433117755483
Merged-chr3-146405101-2	chr3	146404598	146405598	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253769, intron 1 of 13)	intron (NM_001253769, intron 1 of 13)	456.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	3.60502139945682	3.33360072810118	3.61535315842721	3.53643591163583	3.1584861366317	3.47465254374121	-0.472414089170025	0.4467084312086	0.80610963227077
Merged-chr7-97753507-2	chr7	97753010	97754010	+	611.75	f0_balb.idr|f1_balb.idr	Intergenic	B4A|SINE|B4	-15263.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	2.72202072699574	2.73421700961095	2.83776231587169	2.65153934997769	2.51061735653551	2.66672373410099	-0.871715129530466	0.248039031388418	1
Merged-chr19-8518443-4	chr19	8517944	8518944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-72810.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	5.45590098669002	5.52800815537481	5.89364971463583	5.46688280953894	5.6538161271695	5.95406863752239	0.129786935472718	0.71123128375613	0.924628659085065
Merged-chr5-125141219-4	chr5	125140665	125141665	+	909.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	38049.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	5.25040875458384	5.57049625197919	5.30921026748427	5.33074863786048	4.93956234217947	5.59940067660087	-0.165224693508588	0.671309755161821	0.91042706437241
Merged-chr2-172442274-3	chr2	172441737	172442737	+	863.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	1659.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	3.58278787856408	3.39164779453222	3.43454106498013	3.37040481531595	3.57780746475671	3.61319094511643	0.18407709873711	0.752632099304583	0.938346259574037
Merged-chr2-11475208-3	chr2	11474718	11475718	+	846.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177752, intron 13 of 13)	intron (NM_001177752, intron 13 of 13)	26872.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	2.97321417379839	3.01589707723124	3.35035099815073	2.98979570330115	2.95383192328664	3.03648451508498	-0.562299889599215	0.409371414725321	0.782733045555046
Merged-chr6-13610911-2	chr6	13610411	13611411	+	717.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11A|LTR|ERVK	-2813.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	2.9114031148923	2.8025238394047	3.09543102675776	2.79791372744016	2.91169195615546	3.05462810292803	-0.0668860934421728	0.924260059657667	0.982923745196305
Merged-chr9-106281110-5	chr9	106280642	106281642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	81.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	6.88276887816465	7.09856661249054	7.02899174864462	6.97448263746101	7.04177989235446	6.63178963723577	-0.153244372742537	0.56075753160282	0.865266809264858
Merged-chr9-95571144-3	chr9	95570631	95571631	+	718.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	11314.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	6.80744998354134	7.05613017047316	7.03275657262755	6.68611249314842	7.13730795952503	6.79374052654686	-0.109303396918593	0.689394163394909	0.917325404950403
Merged-chr11-104001180-4	chr11	104000695	104001695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34324.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	5.87749503456837	5.91426968489626	5.70531985590864	5.61509441208032	5.62988301843833	5.86835636217119	-0.256741866249274	0.412998050412861	0.784726474670108
Merged-chr19-5922634-2	chr19	5922134	5923134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026772, intron 1 of 1)	MIR|SINE|MIR	2182.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	3.73754837247794	3.23896865886208	3.33522579503088	3.45459765047243	3.17741232774069	3.7268722851914	0.031392842037617	0.962204571460503	0.990802868210603
Merged-chr9-15035013-3	chr9	15034516	15035516	+	837.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	10462.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	5.28053468600905	5.33010669828697	5.38214333825803	5.36545106266731	4.9296713034198	5.1955865350124	-0.324329142723465	0.374701759700199	0.758118627242714
Merged-chr9-35211084-4	chr9	35210582	35211582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	-27.0	NM_001291448	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	8.73592518217905	9.07949633268827	8.7311873450742	8.61045580676313	9.01409550952797	8.74902258491656	-0.0778084699532767	0.738870231437973	0.934106252288505
Merged-chr15-6560989-2	chr15	6560489	6561489	+	787.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-18858.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	4.81350908611242	4.83731550015872	5.02647571300363	4.76441294985367	4.72634780493433	4.51419988941025	-0.476289138747518	0.238833373007109	0.635543188457686
Merged-chr15-10921101-3	chr15	10920590	10921590	+	927.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31242.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	3.00682984414194	3.01659349721614	2.96238117290397	3.11746548175378	3.00531575120983	3.2108641778929	0.504360209574103	0.445651255507593	0.805296706011004
Merged-chr2-5706799-4	chr2	5706303	5707303	+	834.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	7959.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	5.45603508590256	5.27829738538642	5.65937512144497	5.50757457235358	5.48928643377575	5.14883196059308	-0.119534795087548	0.737985766835528	0.933858424870961
Merged-chr5-137657225-4	chr5	137656763	137657763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178162, intron 6 of 11)	RSINE1|SINE|B4	-11549.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	4.92379364320956	4.47627243478856	4.92788248842411	5.06044637879189	5.13165734563191	4.84411470964614	0.523643110702977	0.205108155646704	0.595694220420628
Merged-chr1-85995039-3	chr1	85994525	85995525	+	736.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26917.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	2.4333372538551	2.33000958873972	2.58121229418294	2.30723227342465	2.54017876500972	2.53113693105432	0.0988936737945768	0.904583952680009	1
Merged-chr1-165700710-3	chr1	165700187	165701187	+	726.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7407.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.23994124187918	4.89792282785392	5.34183199150279	5.41946198322472	5.32012372583024	5.46273636444833	0.469270168486315	0.197251931361219	0.5852358247354
Merged-chr1-92774975-3	chr1	92774489	92775489	+	930.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56656.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	4.24677206696257	4.4397208905711	4.29976458899454	3.97776585641075	3.79705797916739	3.77323493283388	-1.41093757084482	0.00484279391727308	0.059866170891169
Merged-chr2-66124272-7	chr2	66123735	66124735	+	947.714294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015736, intron 1 of 10)	CpG	558.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	5.2541946878096	5.33436770703353	4.86060532294601	5.09276492258648	4.81341474726788	4.84727300980357	-0.53901364064438	0.172887736029784	0.551631164432615
Merged-chr11-120673146-7	chr11	120672783	120673783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026877, intron 1 of 15)	CpG	310.0	NM_026877	68938.0	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	7.63896572588396	7.72489517506848	7.54401272783294	7.63384410015786	7.34372704087472	7.17323967590273	-0.347766634572275	0.158377958422586	0.530143743037513
Merged-chr17-50024741-4	chr17	50024234	50025234	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165763.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.12459813986213	6.33364348500186	5.70243305738853	6.09982358240178	6.11015545457308	5.92764081312212	-0.0706264318736146	0.827601152926943	0.959481887246358
Merged-chr4-88701771-3	chr4	88701280	88702280	+	972.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10512.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	4.69415151540324	4.56055778377447	5.15332551205884	4.62441218483639	4.63419610003705	5.32786511804712	0.170452319595363	0.719309796273866	0.927777045380255
Merged-chr9-96530829-4	chr9	96530332	96531332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52157.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	7.02036272726739	6.91909411977678	6.72308709377066	7.37909838906377	7.44153022262061	6.62305586815034	0.471925675943431	0.127336827575029	0.47699287574227
Merged-chr4-58568478-4	chr4	58567984	58568984	+	973.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14993.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.66185317903714	4.1003337745914	3.76657311665047	4.04382481506489	4.01366949769266	4.0413471373389	0.505070041989274	0.34169687755209	0.730935106878357
Merged-chr17-50872793-4	chr17	50872281	50873281	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 14 of 21)	intron (NM_028162, intron 14 of 21)	174100.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	3.40369094394767	3.61766563580107	3.60807249715421	3.54103453985275	3.3805084027508	3.5191661859913	-0.245166925221641	0.671653999764173	0.910573176861295
Merged-chr9-47642455-1	chr9	47641955	47642955	+	567.0	f1_c57bl6.idr	intron (NM_001025600, intron 1 of 8)	Lx8|LINE|L1	112103.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.87079600720925	6.30197153459501	6.56886780673655	6.64436302733077	6.66886945217486	6.4281002561943	-0.0216754068559172	0.941602217066051	0.987024728112131
Merged-chr3-20004718-4	chr3	20004224	20005224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 14 of 16)	intron (NM_080634, intron 14 of 16)	30586.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	5.98736628034737	5.99031508957777	5.62653563672891	5.82589566625689	5.99400264699338	5.92751816054965	0.0500380156333255	0.872794800387642	0.970292860778053
Merged-chr18-61177129-4	chr18	61176644	61177644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178277)	promoter-TSS (NM_178277)	-94.0	NM_134134	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	7.6904041511015	7.96819461835935	7.54465708440111	7.74770686685129	7.48037254638206	7.5100259524561	-0.243045903098449	0.323600155836012	0.716811029964333
Merged-chr4-105556949-4	chr4	105556446	105557446	+	683.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	399599.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.78393576366886	5.05753339097968	4.88480437980133	4.68034066493859	4.6482394711885	4.87713366992058	-0.422039434186382	0.289981189425832	0.687700879517227
Merged-chr17-10701418-2	chr17	10700918	10701918	+	830.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	138773.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	3.93717814103966	4.20756652852109	4.17424747257448	3.48447262328768	3.20147113211486	3.36462734614638	-2.82677109057607	7.35357786681276e-06	0.000308405497551288
Merged-chr19-11823165-1	chr19	11822665	11823665	+	643.0	f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-3762.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	3.11606099805941	3.25953261022623	3.29130165267797	3.65601791213172	3.52287085047276	3.47800548016293	1.30784595534569	0.0314776106037449	0.21495190998083
Merged-chr8-39674369-2	chr8	39673854	39674854	+	781.5	f0_balb.idr|f1_balb.idr	Intergenic	Intergenic	-31676.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.94840704604659	4.16072956569378	3.93666238584311	3.68476669032487	3.56180895795866	3.63872445130186	-1.30076878727221	0.0152757476909953	0.134319392779493
Merged-chr8-80325412-4	chr8	80324944	80325944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168601.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	5.21691952192577	5.42407337441639	5.73206450699313	5.29205364331483	5.25930992147341	5.62076430876907	-0.142162600111369	0.698660333133108	0.920439942142444
Merged-chr14-34296547-4	chr14	34296049	34297049	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13968.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	5.38540424555668	5.958599645819	5.9737909053727	5.84977902286647	6.11016087735835	5.96659773356445	0.329427239007655	0.337654203422359	0.727543075805154
Merged-chr1-184033629-4	chr1	184033125	184034125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_022019)	promoter-TSS (NM_022019)	373.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	8.73319345568374	8.88557535136018	8.71825829545133	8.66383213272824	8.81979127318203	8.43998799372774	-0.174064169459323	0.421401367672958	0.790262902892303
Merged-chr2-45191956-4	chr2	45191452	45192452	+	793.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74510.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	4.78450627736607	4.67083807855857	4.81868652571916	5.15989350405216	5.2798108230652	5.06837095405774	0.921607466417999	0.0141861425760277	0.127970571494592
Merged-chr13-101740179-4	chr13	101739672	101740672	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	28045.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.29800755201323	5.2907126209864	5.41965289940347	5.74443129400564	5.94178392767862	5.92788496651704	1.0151905444904	0.00151192540033762	0.0248518010651757
Merged-chr2-103009445-3	chr2	103008941	103009941	+	964.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER63C|DNA|hAT-Blackjack	64072.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.13231409632292	6.1614619574866	6.69885043417482	6.13066132160672	6.30961601591283	6.54216707318692	-0.0216145187846918	0.946163260335626	0.98796006280508
Merged-chr7-110844400-4	chr7	110843905	110844905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025999)	promoter-TSS (NM_025999)	-24.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	6.79099291590626	7.18403017324796	6.93702255423281	6.96246224017152	7.00060129105795	7.00879807870735	0.00817724206417499	0.974590371845753	0.994296985713596
Merged-chr15-76312890-1	chr15	76312390	76313390	+	577.0	f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-5645.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	6.51037609029183	6.54034419473935	6.84130672490649	6.42518876974724	6.26462909700398	6.51477612248624	-0.374979816062853	0.177594051659202	0.55868604349561
Merged-chr17-5524193-2	chr17	5523693	5524693	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	MMERVK10D3_I-int|LTR|ERVK	31593.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	2.09768086402578	2.27858586141419	2.26840364193221	1.94315942042558	1.89917730396326	2.08068580351429	-2.08636182888369	0.0383528470055364	1
Merged-chr6-48839090-2	chr6	48838590	48839590	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164208, intron 1 of 6)	L1ME4b|LINE|L1	1898.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	3.59043479784497	3.61617427571963	3.4138823611014	3.59920121938652	3.49097859558141	3.54268362081459	-0.0204737673741772	0.971345223101938	0.993738007006579
Merged-chr4-124696036-4	chr4	124695570	124696570	+	958.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2516.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	4.78211058863967	4.74598498092893	4.63096807523927	4.0690567381153	4.06937208743189	4.16830232469713	-1.6515504246658	0.000237529692598307	0.00575368395765777
Merged-chr6-70812079-4	chr6	70811582	70812582	+	801.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19907.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	3.42310661514241	3.11775894900791	3.34423235097135	3.31299576110232	3.34744695820916	3.30254355857008	0.0883799587632755	0.886791463922052	0.973794308941933
Merged-chr6-113078164-3	chr6	113077653	113078653	+	866.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	514.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	8.5047948764448	8.79401826821914	8.68391312664694	8.81058507220073	9.20737507480589	8.71026498170522	0.366712965518104	0.120992508581899	0.465165146362326
Merged-chr6-101555409-4	chr6	101554916	101555916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177519.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	5.75577214545476	5.67609159545686	5.49929293239643	5.21668448503108	5.25282763144763	4.76657897650929	-1.05491358569184	0.00512418001447764	0.0622260319096111
Merged-chr18-4009312-4	chr18	4008784	4009784	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-156548.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.5516956236726	3.51539092935767	3.86423832432125	3.71233855429971	3.55083809799434	3.40948192183898	-0.273744225493654	0.639466592392054	0.898128849808374
Merged-chr4-137836043-5	chr4	137835468	137836468	+	913.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.02682652777021	4.02263929146284	4.17911691712012	4.39255872897961	4.12000191899791	4.24721229349465	0.512017407041967	0.280970017940796	0.679146910667491
Merged-chr1-172310224-4	chr1	172309742	172310742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2125.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	7.58464293428713	7.61956430208321	7.16799799443827	7.82592663202062	7.88101727803323	7.199365737728	0.289935125904664	0.317632049886134	0.711465694167261
Merged-chr4-41756162-4	chr4	41755615	41756615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	-95.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	7.07815358989199	7.0038837226459	6.89757113352008	7.20668325259027	7.09998680842651	7.10604314733072	0.209594560117123	0.380553919858246	0.762624904906886
Merged-chr2-27690493-2	chr2	27689993	27690993	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	13292.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	6.30416474091801	6.79770321315895	6.54860318236569	6.14953924193952	6.47710139043364	6.41191326696271	-0.344596774147672	0.249486170310994	0.646383274979363
Merged-chr17-35750892-2	chr17	35750327	35751327	+	872.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21623.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.84006809268045	3.84249773516939	3.92764326673621	5.25336066326287	5.20022191086446	4.65677331598809	3.21771890405711	1.81440645650912e-10	2.29094282903203e-08
Merged-chr19-56422985-6	chr19	56422426	56423426	+	914.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007611, intron 2 of 6)	intron (NM_007611, intron 2 of 6)	25797.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	2.62468780347877	2.55388205494101	2.99277268179012	2.69238540917202	2.79037013017943	2.77484117623675	0.114987879828838	0.880784298729752	0.972620786559158
Merged-chr17-56288988-2	chr17	56288488	56289488	+	929.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_025836, intron 1 of 7)	B3A|SINE|B2	1523.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	4.60850494907564	4.72140466930433	4.65486200136018	4.50516471997855	4.45245430391655	4.47262132671865	-0.458742762324721	0.269329170322127	0.666452341991608
Merged-chr12-110888311-4	chr12	110887809	110888809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081057)	promoter-TSS (NM_001081057)	836.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	7.37163867876278	7.03190551910953	6.55121439217447	7.25899610719965	7.33758755334835	6.6675365942377	0.137797337240986	0.678851554006134	0.913553914280182
Merged-chr2-168540033-4	chr2	168539541	168540541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	L2|LINE|L2	50324.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	7.02588324236456	6.90956564901824	7.16096369831792	6.66696617242383	6.20089124021476	6.21282791668001	-1.02463812029309	0.000360083719442737	0.00808905133028922
Merged-chr2-153168859-2	chr2	153168359	153169359	+	807.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7558.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	7.38203222729672	6.92826431494048	7.25383940438519	7.45603969738562	7.36077819493777	7.03288795694373	0.150880671553789	0.576324903245733	0.871585692229598
Merged-chr16-11176401-4	chr16	11175885	11176885	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145931)	promoter-TSS (NM_145931)	8.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	8.39220230032446	8.41926126222217	8.29823831816358	8.3065932279478	8.45915779849799	8.40133548446956	0.0257821624229269	0.899073058004917	0.976456276294408
Merged-chr12-85396271-2	chr12	85395771	85396771	+	667.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-21554.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	6.96125554378165	7.11863524617785	6.8292118026003	6.36983192930772	6.51075631059028	6.60204134112278	-0.76401934022616	0.00349121196222089	0.0470846943636612
Merged-chr16-92028283-4	chr16	92027799	92028799	+	900.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30023.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	5.38842989598943	5.3911566534823	5.40130349235305	5.52955615561724	5.80303114033722	5.52457618769555	0.461727025155178	0.163901885897837	0.537906969644349
Merged-chr5-123580878-3	chr5	123580381	123581381	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019765, intron 22 of 23)	intron (NM_019765, intron 22 of 23)	-7866.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	4.57174948076316	4.4276494180156	4.27180641288329	4.2176209295404	4.1662465501757	4.1487888376711	-0.689976200814607	0.132126716487755	0.486188104304079
Merged-chr10-19691470-1	chr10	19690970	19691970	+	787.0	f0_balb.idr	Intergenic	Intergenic	-21117.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	8.04409175512676	8.12946637726079	7.54744785803894	7.85945402154358	8.08897375437285	7.593887473863	-0.0981452105355947	0.717849367265616	0.927216085145081
Merged-chr5-76392663-2	chr5	76392163	76393163	+	904.6666869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28886.0	NM_019515	56183.0	Mm.154879	NM_019515	ENSMUSG00000029236	Nmu	-	neuromedin U	protein-coding	3.27488727804658	3.38276209086194	3.28143665795163	3.40221940079531	3.28441123224636	3.62137553507444	0.461558529308196	0.44894621878136	0.807468537975475
Merged-chr2-49743788-4	chr2	49743291	49744291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008449, intron 19 of 25)	MTD|LTR|ERVL-MaLR	-43895.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	7.62980128177074	7.8761244054058	7.42716726955025	7.65699125754016	8.11036868346976	7.54799005523293	0.203281585805121	0.455604789310856	0.811069747178527
Merged-chr7-100430142-4	chr7	100429631	100430631	+	889.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001017985, exon 21 of 33)	exon (NM_001017985, exon 21 of 33)	-42860.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	6.78128571374908	6.51258123894486	6.57203495359294	6.86663962148409	7.16024501459892	6.94355265675539	0.577733249511923	0.0287195181087355	0.203135245729856
Merged-chr10-40073105-2	chr10	40072605	40073605	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 3 of 5)	B1_Mus2|SINE|Alu	-47837.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	5.63627265196798	5.73369616380537	5.50330464546822	5.18428324011599	5.77865413567781	5.34974704769077	-0.288178291210394	0.431751814221941	0.797054630937124
Merged-chr3-89238512-4	chr3	89238011	89239011	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039466, intron 7 of 8)	intron (NM_001039466, intron 7 of 8)	6502.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	2.88230187881794	2.80543167943375	3.21673630850634	2.81627659245698	2.997996889556	2.62788449552019	-0.715505221971079	0.362441464221015	0.747881537505714
Merged-chr10-68275059-4	chr10	68274527	68275527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3699.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	8.00424248475669	8.11462064952426	7.18518570236726	7.67460221209927	8.11141737577275	7.39467826293793	-0.0995648366461343	0.764375618173344	0.941979298344481
Merged-chr5-34347417-3	chr5	34346973	34347973	+	867.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304270, intron 3 of 7)	intron (NM_001304270, intron 3 of 7)	10541.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	4.68426824389834	4.87271425271538	5.03808681044509	4.78589054247076	5.08530517572398	5.31630014589849	0.451901010269015	0.265279037552864	0.663013396735394
Merged-chr11-79305265-2	chr11	79304765	79305765	+	918.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34627.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	7.3973502412876	7.16381739528223	7.07654114351951	7.02691738064691	7.08786752081549	7.10850844480473	-0.227707388298516	0.351612188915573	0.739403630741215
Merged-chr13-75791015-4	chr13	75790522	75791522	+	980.1416630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48863.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	4.7688215069223	4.43737276255186	4.65784029723966	4.31565949499991	4.50087282404344	5.12570784139242	0.136405468525401	0.777649679083967	0.945202525595529
Merged-chr8-116991420-2	chr8	116990920	116991920	+	716.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	2029.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	1.83602676009032	1.80562040268736	1.99648915734109	1.73182211414028	1.64098462592878	1.7330388191883	-1.74991968101543	0.101502610343362	1
Merged-chr5-4530476-4	chr5	4529941	4530941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227775.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	5.44287643187217	6.00315500360815	5.93301568570544	5.46255301157894	5.42000092585715	5.90429218893632	-0.386293390669867	0.29170547772973	0.689198857889432
Merged-chr7-110626504-2	chr7	110626004	110627004	+	705.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1153.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	4.93421113322876	5.02500173354351	5.20775215854296	5.37003771914925	5.24747258641222	5.10501709394279	0.410279661051486	0.260060130486453	0.657626465516434
Merged-chr9-95573543-3	chr9	95573104	95574104	+	813.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13787.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	7.88795108173354	7.68464488049168	7.82679393357558	7.94107037532517	8.07797858824586	7.79064373036568	0.209749294685851	0.350844100245418	0.738815453164556
Merged-chr1-131019558-4	chr1	131019072	131020072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010548)	promoter-TSS (NM_010548)	-273.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.45537018048245	6.41760757282451	6.36198852944433	6.95486586445072	7.02262544194125	6.48113248717037	0.694472568463492	0.014218829686315	0.128083720269613
Merged-chr4-135354532-2	chr4	135354032	135355032	+	658.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1318.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	5.78318259531023	6.03619762225809	6.43777343673759	5.86839455457137	6.19878736701573	6.078864101386	-0.0746711466357319	0.822779799867592	0.958153338614688
Merged-chr19-3936618-4	chr19	3936112	3937112	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	1426.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	7.11541605315032	6.91746988894316	7.2674270861142	7.18750120674413	7.46517511449409	7.12145435937795	0.262283788773423	0.309508249941023	0.705094112555581
Merged-chr10-21889616-4	chr10	21889158	21890158	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	7474.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.69768858038312	6.44295554166001	7.08166353832145	6.86033142830904	6.87247220415885	6.77505647925905	0.127892832739125	0.655636944627416	0.90429384180742
Merged-chr18-24654471-4	chr18	24653912	24654912	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026779, intron 1 of 14)	intron (NM_026779, intron 1 of 14)	721.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	5.64467560648018	6.17925281835783	5.93486782286444	5.35711972183159	5.60758088283014	5.19361965646955	-0.97166003666676	0.00731274536554425	0.080710825888872
Merged-chr6-39415986-4	chr6	39415464	39416464	+	917.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	B3|SINE|B2	3812.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	3.43928205722673	3.40644358588683	3.42242699070616	3.44079275391862	3.46845263897249	3.70192428241063	0.41752162254576	0.471867146235745	0.820369595325449
Merged-chr2-130629948-4	chr2	130629424	130630424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001255993, exon 1 of 7)	5' UTR (NM_001255993, exon 1 of 7)	103.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	7.53741766341478	7.71090026895304	7.38432204357831	7.43436193541133	7.48996271526579	7.16693069212971	-0.260655856409722	0.288466909971898	0.685895051202827
Merged-chr5-115349057-4	chr5	115348559	115349559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007748)	promoter-TSS (NM_007748)	-104.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	5.9743601802299	5.97841525999161	6.16016390545285	6.14016768335015	5.71556245211338	6.33500684825434	0.070090257531505	0.829777268768646	0.960134151531511
Merged-chr16-38458045-2	chr16	38457545	38458545	+	828.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-888.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	7.87790604215284	8.0418755303103	7.77495994427438	8.21119251177205	8.35583300800578	7.71253088752553	0.317733939756398	0.220137364037204	0.614507907782981
Merged-chr17-47767844-3	chr17	47767416	47768416	+	782.266663	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-17828.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.13547380259757	7.43979558448727	7.46869657578749	7.46374465844024	7.55593075741441	7.16402703564627	0.0882030083148347	0.729726261713569	0.930635866770147
Merged-chr9-83834572-4	chr9	83834050	83835050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009445)	promoter-TSS (NM_009445)	-139.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	7.63765639745354	7.58108639219874	7.37233118844005	7.58094156542248	7.68604539631687	7.03500286533849	-0.092323324421566	0.735530042041796	0.932744628746236
Merged-chr3-67557372-4	chr3	67556854	67557854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25414.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	6.46783105419492	6.17247776289605	5.79813294627703	6.95390177476095	7.12163048492203	6.62202276291257	1.16805075760835	0.000306786087131591	0.00710268690541054
Merged-chr4-48492716-3	chr4	48492205	48493205	+	760.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19242.0	NM_001355740	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	2.66102418243199	2.85830470666525	2.60176878897192	2.7716119713801	2.90770730942544	2.86796226098786	0.689366786396372	0.357604700669542	0.744207696383239
Merged-chr16-44793875-3	chr16	44793370	44794370	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021325, intron 6 of 6)	intron (NM_021325, intron 6 of 6)	-26858.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	4.18885757593466	4.14144783136037	4.13096039674581	3.65904400417643	4.00298725636586	4.05972816828929	-0.695027172154038	0.175521659641543	0.555463669244799
Merged-chr8-46432073-2	chr8	46431573	46432573	+	736.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38964.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	3.45392076598246	3.4252357484643	3.25435393925561	3.86026948600861	3.78246052343345	3.73351078814903	1.44736566731871	0.0133831187995393	0.12307499437136
Merged-chr6-122924163-2	chr6	122923663	122924663	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199311, intron 1 of 5)	Lx4A|LINE|L1	2315.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	5.1708934257789	4.88009088207532	5.2939299948913	5.41865333333224	4.93193818556519	5.13435827168295	0.114998433514376	0.770728668350815	0.94345245755247
Merged-chr7-96476372-2	chr7	96475872	96476872	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 3 of 32)	MTE2a|LTR|ERVL-MaLR	-134408.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	5.66988264149424	5.66585059929975	5.62864050345702	5.35105355632576	4.93598813860823	5.49982398525722	-0.750940498039348	0.0371325988506682	0.237799786872498
Merged-chr2-120632189-4	chr2	120631698	120632698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22603.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	6.7287824771952	6.40823897123462	6.4399632280932	6.55736645107302	6.87345903566291	6.40327837085887	0.161097807692019	0.581410376098466	0.873298754324848
Merged-chr10-77550149-2	chr10	77549649	77550649	+	797.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 7 of 15)	intron (NM_008404, intron 7 of 15)	19801.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	4.86511251511439	4.90499790372757	5.03865631979119	4.75768588338474	4.81990092485437	5.06922017911264	-0.116909388077817	0.763196097541732	0.941742427733164
Merged-chr7-55794141-4	chr7	55793626	55794626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360874)	promoter-TSS (NM_001360874)	1.0	NM_001360873	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	4.64744055048033	5.05256491802647	5.11574618731642	5.03759799882596	4.78960665386235	4.94249071592412	-0.0569484331827619	0.888349702716126	0.97401529899353
Merged-chr6-43645352-3	chr6	43644848	43645848	+	969.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	20930.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	2.84603989633591	2.79986992871738	2.96925611117944	2.86910569448176	2.71860913428874	2.86370003904722	-0.275177578708974	0.697600518446245	0.920011490392658
Merged-chr1-171231098-4	chr1	171230574	171231574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010185, intron 2 of 4)	intron (NM_010185, intron 2 of 4)	3275.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	5.67938934464477	5.36238108879895	6.01079559376014	6.26166377994735	6.09249666560718	6.02742955532269	0.767174266869177	0.0223345047312775	0.173666897456325
Merged-chr2-73312674-4	chr2	73312198	73313198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	46.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	8.03036244076789	8.31507236956963	7.78338267257095	7.79662673300576	8.42143705009352	7.78641504594094	-0.0276886183154702	0.923202302984157	0.982693984177635
Merged-chr3-107138763-1	chr3	107138263	107139263	+	791.0	f1_balb.idr	Intergenic	Intergenic	37196.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	2.86684799443035	2.79357869672546	3.19646154906777	3.15803655784031	3.14189098562793	3.15601725538986	0.895208492185381	0.196179105995863	0.583940557712492
Merged-chr3-27448648-2	chr3	27448148	27449148	+	625.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	77297.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	2.88146747483773	2.85653738457399	2.91004421673775	2.62878344812802	2.77014312658088	2.60677438039446	-1.0865849962436	0.149739160775093	0.516223009447192
Merged-chr2-30795515-2	chr2	30795015	30796015	+	774.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_198000)	TTS (NM_198000)	6222.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	3.42794708763108	3.15412704292835	3.17538938603622	3.13451161635765	3.03678930208275	3.51945833217129	-0.0843357105952135	0.899898447201532	0.976728292075907
Merged-chr3-10439609-4	chr3	10439101	10440101	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127191, intron 1 of 6)	CpG	529.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	6.60889553116635	6.37120465645823	6.12557287146613	6.33215323507954	5.79391219868385	5.72799723829962	-0.679999917283947	0.0449388600107355	0.267329811995876
Merged-chr6-72381643-2	chr6	72381143	72382143	+	687.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1175.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	4.41371397908981	4.22487091982169	4.52825016232538	4.36213104223768	4.50844041035976	4.55426414144876	0.227545125245692	0.606852157565002	0.884349416059017
Merged-chr16-21595166-2	chr16	21594666	21595666	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	99499.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.9814985014829	5.09630371223371	4.92312395749641	4.62519975111691	4.57295429130665	4.76359315948704	-0.815540068642338	0.0375104260043183	0.239371694682669
Merged-chr13-54302232-2	chr13	54301732	54302732	+	608.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69117.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	4.5108044747419	4.6167830980509	4.63196106347102	5.33744439324747	5.2177176446559	5.33521960536692	1.55834173939947	4.50378640986856e-05	0.00144747415833273
Merged-chr16-76409535-3	chr16	76409041	76410041	+	807.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35714.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.03764314533808	3.6517383559098	3.75695615299402	4.06582612918623	4.00554643624399	4.03215526797553	0.620690095332095	0.237192911462814	0.633631301431805
Merged-chr10-60344323-4	chr10	60343819	60344819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-2532.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.12520029303574	3.86754549029297	4.31334320571203	3.75737757499902	3.75707801195792	4.12766400859882	-0.672615169365156	0.207968713415251	0.598797906704598
Merged-chr19-5625505-4	chr19	5624995	5625995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-11995.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.98559812487058	4.08432724529927	4.15276068674887	4.12642219860111	3.70690889971773	4.30607844494685	-0.0379432407731232	0.94272510696052	0.987202156853573
Merged-chr16-43889762-4	chr16	43889284	43890284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356328)	promoter-TSS (NM_001356328)	-108.0	NM_001356328	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	6.74768539024767	7.02456564724596	6.55135039529976	6.57732692852391	6.97521819966816	6.37897256175804	-0.179086902003421	0.559727219598612	0.865086854188098
Merged-chr4-56070885-4	chr4	56070382	56071382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR78|LTR|ERV1	-538407.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.22131523459708	4.46972101467693	4.35155086965661	4.10722666288212	4.12150064710719	4.45972187499477	-0.331640167094824	0.481512478696481	0.825121444939066
Merged-chr5-107949833-4	chr5	107949334	107950334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026062, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	37243.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	5.52927538260009	5.26557042101501	5.41803688888004	5.29237233935234	5.52459668994098	5.5099097218341	0.0766613836621076	0.822815676506015	0.958153338614688
Merged-chr1-95316922-2	chr1	95316422	95317422	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	3294.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.98944732910987	3.89109558789405	3.9820855391742	3.76938288448648	3.99609582608814	3.68846176568778	-0.365063699890961	0.488324916872067	0.829104641846902
Merged-chr8-72009364-1	chr8	72008864	72009864	+	1000.0	f1_c57bl6.idr	intron (NM_024444, intron 1 of 12)	intron (NM_024444, intron 1 of 12)	262.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	3.60667684364424	3.39031738274998	4.0628119682667	4.53272712256697	4.08346939281276	5.17829852909823	2.61210208930751	0.00716514189255616	0.0794929502127751
Merged-chr13-52062664-2	chr13	52062164	52063164	+	922.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34077.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.03182634157726	4.61877234111032	5.40456427571429	4.51092995625848	4.26941100591923	4.97611627050738	-0.990043329668095	0.0427370018438362	0.259209032579736
Merged-chr11-48869553-2	chr11	48869053	48870053	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008326, intron 1 of 2)	intron (NM_008326, intron 1 of 2)	1867.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	4.17127872091532	4.02439670931733	4.51918607564976	4.27492792780535	4.31239667481162	4.15926422127582	0.0317075299054319	0.947828194853003	0.988008807662239
Merged-chr1-125441866-4	chr1	125441363	125442363	+	994.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6136.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.80265442368483	6.76277365030017	6.77815558956973	6.88865836795095	6.78577130374487	7.19145750952484	0.271496877650721	0.298054645127431	0.694830164041183
Merged-chr12-84389098-4	chr12	84388617	84389617	+	961.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001026214, intron 6 of 15)	intron (NM_001026214, intron 6 of 15)	11817.0	NM_001286058	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	5.11888802042888	4.9970766952043	4.88058032282558	4.81783650272995	4.81567279888642	4.62103163811631	-0.545926248292661	0.16354854854195	0.537568541460739
Merged-chr5-135912013-4	chr5	135911509	135912509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	22632.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	7.02885837754506	6.73049183141857	6.96526803341489	6.1973387152697	6.31624593280222	5.98773996352562	-1.1629914551147	4.20176997822128e-05	0.0013667743406874
Merged-chr6-143099557-2	chr6	143099038	143100038	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001362118, intron 2 of 25)	CpG	614.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	5.92035989173324	5.9223240593	5.86271778776737	6.44490910037086	6.14015850783986	5.97456283185054	0.519162372394251	0.0884637215617763	0.39477888978682
Merged-chr19-44267066-4	chr19	44266556	44267556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-26620.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.7112604786311	4.38392897171113	4.45218084463888	4.89903428383997	5.18068414575571	4.69791335234156	0.978837359526625	0.0236617188871848	0.180368264402864
Merged-chr4-63401809-4	chr4	63401307	63402307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	1638.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	7.81574916059932	7.61372117071116	7.71562965328438	7.72872011001074	7.76887898596957	7.73717235373432	0.0405950704048893	0.852438116853531	0.965385693881201
Merged-chr5-93206005-4	chr5	93205501	93206501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029363)	promoter-TSS (NM_029363)	494.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	7.72279433080548	8.04701499902796	7.63814609046734	8.00681837845189	7.89283472568093	7.63703004253239	0.0548138349166776	0.824800801081188	0.958596193929081
Merged-chr4-40772994-4	chr4	40772494	40773494	+	908.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15109.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	3.71992428063799	3.57856963318938	3.74422767615832	3.70732855410598	3.69294165498321	3.71107154889952	0.0802212590018583	0.88141505164817	0.972728140609586
Merged-chr9-57439286-2	chr9	57438786	57439786	+	640.666626	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152144, exon 2 of 8)	non-coding (NR_152144, exon 2 of 8)	450.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	4.86189058001359	5.16328667450935	4.91663733862893	4.92562741919382	4.95817060635842	4.78912087590537	-0.204385757357203	0.59854124196867	0.880808927175713
Merged-chr3-95526798-4	chr3	95526298	95527298	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001267695)	promoter-TSS (NM_001267695)	12.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	7.13402289403846	7.03879047692384	7.05051120927955	7.21147484409548	7.22615923988644	7.19639741687925	0.204955107168609	0.377195574590885	0.759616521190546
Merged-chr2-27737971-2	chr2	27737471	27738471	+	674.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	27388.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.37345730603824	5.79665716247929	5.95336780587425	5.58168838005719	5.72896997411808	5.99209321877273	0.0890377408365022	0.800258822427495	0.952434057632842
Merged-chr8-11180574-2	chr8	11180074	11181074	+	688.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132231.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	3.6119005150373	3.98036564616007	3.95056377706904	3.0895680489721	3.13769393636275	3.41348359518521	-2.56278805279948	0.000121437585823411	0.00334146119087116
Merged-chr5-99362579-2	chr5	99362079	99363079	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-109652.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.9657022816908	7.72277274495286	7.64536520090329	7.93543919439489	7.84912486378691	7.61557677970389	0.0317705814497175	0.89323851774281	0.975210713351106
Merged-chr12-85993101-3	chr12	85992607	85993607	+	807.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	85934.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	5.60420332608537	5.59021680122844	5.45097474287444	5.42563922931402	5.55257170837119	5.29213614089318	-0.22345766848446	0.503002157849802	0.836691193058519
Merged-chr12-111036393-4	chr12	111035894	111036894	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3404.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	4.6092217029905	4.51824133643324	4.7407296413573	4.79678132150439	4.76554957915542	4.80616601078491	0.398669703407389	0.32021261307136	0.714116509165426
Merged-chr15-30611841-1	chr15	30611341	30612341	+	615.0	f1_balb.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427285.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.55847280662331	4.48853920553899	4.47847769362899	4.80988049522025	4.99218930904567	4.79446126331575	0.855632198103964	0.03485389194263	0.22898718047867
Merged-chr3-126436351-4	chr3	126435859	126436859	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	72507.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	3.36060175754336	3.27672771829399	3.5091122039845	3.56294353945519	3.84412825186997	4.01811595635298	1.56367345495606	0.00817442354749234	0.0873814792574181
Merged-chr15-101979597-3	chr15	101979045	101980045	+	915.3110960000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	24797.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	6.21279343412763	6.47932612256379	6.51890737379785	6.3985757593609	6.70069823785471	6.18876065016105	0.0872217328975557	0.771321688805514	0.943614978016208
Merged-chr3-38423575-4	chr3	38423088	38424088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	61228.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	4.52893309388864	4.78211644210499	4.62908229047531	4.32533873384152	4.41358339320409	4.49056887394432	-0.606542308889292	0.157373608536223	0.528623968470245
Merged-chr5-66081751-2	chr5	66081251	66082251	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	16428.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.38766869564909	5.23445748949858	5.61592377952142	5.61410462949137	5.79561667763233	5.56881417995048	0.493142444044481	0.14428958088297	0.507119216308772
Merged-chr14-32173960-1	chr14	32173460	32174460	+	1000.0	f0_balb.idr	intron (NM_001033988, intron 6 of 9)	RSINE1|SINE|B4	8171.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	7.02043025750421	7.11534795158193	7.08614550315223	7.21124478144556	7.28704832006429	6.87841572024348	0.111513317477189	0.65867297186429	0.905029279003473
Merged-chr3-95662095-4	chr3	95661597	95662597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3376.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	7.43769541883472	7.02445926240183	6.71437168504048	7.51458784679175	7.62650125916651	6.99765499739537	0.463706332307095	0.138755282155044	0.497691577630065
Merged-chr9-98350786-3	chr9	98350310	98351310	+	936.244446	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	54240.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	6.53229958722173	6.75080709230639	6.43102775252861	5.21911303985344	5.2135358613113	5.35903534008161	-2.36811656183733	4.62993820946328e-14	1.11343323275439e-11
Merged-chr11-90226312-2	chr11	90225812	90226812	+	718.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-23164.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	5.74180559721094	5.44061489705409	6.0682160304881	4.74370739851662	4.94285358364516	5.22022544900107	-1.56556596143264	7.02902529372056e-05	0.00209631231770573
Merged-chr1-180725984-4	chr1	180725494	180726494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133225)	promoter-TSS (NM_133225)	-49.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	7.38371082042423	7.36023680186399	7.56829687291361	7.42344711195167	7.14541728093755	7.28558340593169	-0.220203745902688	0.356819353452774	0.743460467581681
Merged-chr12-85531955-2	chr12	85531455	85532455	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	58065.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	7.47721241695855	7.3514585754121	7.24095369528657	7.07065192161878	7.35518809176108	7.28674628274621	-0.176931616928347	0.465146792182078	0.816829749833199
Merged-chr19-9981488-2	chr19	9980988	9981988	+	767.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_073181, intron 1 of 4)	B1F|SINE|Alu	888.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	5.74381641284106	5.97770579124685	5.73627536376976	5.64383544145334	5.4853395078491	5.45759469475107	-0.546452482224475	0.0891498050689048	0.396683260971841
Merged-chr15-59435873-4	chr15	59435386	59436386	+	982.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	61688.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	6.08960198270236	6.32281842395807	5.94818336037542	6.30398515935889	6.28940148704991	5.77080369383588	0.0327882350788443	0.91942253288508	0.982034101943453
Merged-chr3-37744089-7	chr3	37743581	37744581	+	961.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19721.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	4.50375189314038	4.56801960765253	4.52208833502727	4.39381492625843	4.21400872605195	4.704244371908	-0.234196251616154	0.602357857472689	0.882303107092216
Merged-chr11-70688052-4	chr11	70687580	70688580	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	25.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	7.30229294976851	7.16662395192043	7.52616532096137	7.45114506351884	7.46466324527244	7.65622643128686	0.280527948151741	0.245830297837671	0.642837179023604
Merged-chr3-9033095-1	chr3	9032595	9033595	+	973.0	f1_c57bl6.idr	Intergenic	Intergenic	-28372.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.71585741025773	3.99861966749768	4.61204918206727	5.4275419681475	4.65882735009489	5.18217611631377	1.44941864555877	0.00449451801317798	0.0568013145262019
Merged-chr16-33372782-3	chr16	33372280	33373280	+	738.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	7956.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	4.59102701884559	4.47993542226547	4.556491047562	4.45659357622954	4.36914318748814	4.77439712880586	-0.0248849170104304	0.954459309685506	0.989606357454991
Merged-chr14-70102201-2	chr14	70101701	70102701	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	2108.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	4.83965072439374	4.59106846771285	5.13707374592165	4.66905905664833	5.17976303237472	5.37425916086034	0.50986538213646	0.247650675736838	0.644638139008226
Merged-chr4-149485241-4	chr4	149484747	149485747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	18.0	NM_001356322	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	6.29080122478877	6.56807753583087	6.51684296005523	6.39672291369197	6.38089504506844	6.31692334124437	-0.155115845712509	0.570758525240121	0.869253690275099
Merged-chr5-134314896-4	chr5	134314400	134315400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001080749)	promoter-TSS (NM_001080749)	-140.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	6.70838291689982	6.7650599762561	6.42441064242245	6.86050008666608	6.68086710945299	6.57723464340776	0.100568752303489	0.710966448806965	0.924511716032697
Merged-chr1-191422919-4	chr1	191422422	191423422	+	962.7333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25881.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	4.11368150430705	4.03761529090181	4.90490989024075	4.65479520963329	4.06123285286426	4.70185609139633	0.224439130776889	0.689956053142561	0.917567723252397
Merged-chr17-34057426-3	chr17	34056919	34057919	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001317722, exon 36 of 65)	exon (NM_001317722, exon 36 of 65)	18281.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	3.7475257743503	3.7276714587109	4.08083268124576	5.66634493614938	5.83440209474486	5.23654685352083	4.92652348296169	5.90866950000244e-17	2.39828571588392e-14
Merged-chr13-21169841-4	chr13	21169340	21170340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10091.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.51688197847635	5.44758580049232	5.12426371201403	5.47146920579625	5.73639900126979	5.71113272557828	0.49126216741547	0.157715786640138	0.529198725332145
Merged-chr10-7041657-2	chr10	7041157	7042157	+	962.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	-18472.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	5.49042448222129	5.55114375655508	5.69393243288283	5.25834768407435	5.36449532877077	5.30305462092683	-0.508011310157913	0.128152263006435	0.478787340420556
Merged-chr19-4333506-2	chr19	4333006	4334006	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27284.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	7.37642211112874	7.49869282488412	7.30211006384356	7.38683658426996	7.50371143352309	7.37053892285945	0.0383834731868766	0.867160085558271	0.969304239091486
Merged-chr18-36736602-1	chr18	36736102	36737102	+	565.0	f1_c57bl6.idr	intron (NM_028036, intron 2 of 11)	L2b|LINE|L2	1532.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	3.05070709632119	2.9427461871383	3.0333361867077	3.02852769272102	2.91108757277937	2.98648197707896	-0.16209607094102	0.808842305539484	0.954721853010197
Merged-chr16-10982741-4	chr16	10982233	10983233	+	904.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019980, intron 1 of 3)	L2b|LINE|L2	10388.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	4.78647133447881	4.96894195100127	5.40282151155334	5.14290301467395	4.95210617355762	5.51729382946661	0.304994669082111	0.46744893385934	0.817990683108999
Merged-chr11-20209285-2	chr11	20208785	20209785	+	676.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008996, intron 1 of 5)	B2_Mm2|SINE|B2	7873.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	4.29155612755369	4.59378412231062	4.31336014378048	4.14678968742332	4.00743363939922	4.42371156978607	-0.589381172708001	0.219459288311395	0.613704199691297
Merged-chr13-55358547-2	chr13	55358047	55359047	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025828, intron 2 of 7)	B4|SINE|B4	4236.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	3.36072435208245	3.27470334339387	3.2771969518604	3.13212391167469	3.31663520315733	3.40371524124856	-0.0756120469508041	0.902669614885929	0.977580005571747
Merged-chr8-56299611-4	chr8	56299120	56300120	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	5068.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	6.37314168287616	6.43795346153367	6.20795798596047	6.63358446801513	6.83351830063898	6.50772813720451	0.520457855031241	0.0587739168449222	0.31372135433758
Merged-chr4-155234262-6	chr4	155233709	155234709	+	804.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11674.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.81157469667976	5.70554185106088	5.77120701841807	5.21568471102752	5.26863505663449	5.51679972661106	-0.822239923702816	0.0125730264065709	0.118131931034096
Merged-chr5-45449243-2	chr5	45448743	45449743	+	748.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024236, intron 1 of 6)	intron (NM_024236, intron 1 of 6)	986.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	4.63095151692673	4.93472169686406	4.89553744978633	4.88699712480222	4.78009199177317	4.56249011551969	-0.156016031977897	0.704625589794866	0.922488097794635
Merged-chr1-192759633-3	chr1	192759127	192760127	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	11592.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.40592312659108	2.46589634272591	2.62134572579944	2.94377737489412	2.92100688447202	3.00436166793132	2.82785640864868	0.000905706259417854	0.0166951720056803
Merged-chr9-95570225-2	chr9	95569725	95570725	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10408.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.28746110050807	4.29058686126408	4.68998349492855	4.64620490385796	3.99556849053679	4.7547805737258	0.177877196592618	0.730267977503665	0.930837449595198
Merged-chr10-99169177-6	chr10	99168692	99169692	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61057.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.63420121181497	7.63210376231643	7.25467302028453	7.63259113194046	7.56980907752657	7.31211660524991	-0.0141234436491191	0.955028961512413	0.989683851514547
Merged-chr8-86886859-2	chr8	86886356	86887356	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER4A|LTR|ERVK	-1598.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.37889245844216	3.3149615547567	3.45246123623282	3.26675276959054	3.07127218393959	2.99698539743931	-1.09812980348154	0.0919216367407597	0.40383397834874
Merged-chr2-52743051-2	chr2	52742551	52743551	+	948.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-902.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	5.35267233392475	5.12344323082232	5.23989878838472	5.30607648547958	5.04248255908864	5.17273887663892	-0.138579159413329	0.700454116103669	0.920919335036368
Merged-chr4-19568922-2	chr4	19568422	19569422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027769, intron 1 of 15)	MIRb|SINE|MIR	1186.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	4.33079996923543	4.12280161394314	4.35384922168167	4.3352590478776	4.37033974936265	4.24203361013572	0.141484995046619	0.756211360823883	0.939545863427369
Merged-chr11-106660823-4	chr11	106660331	106661331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47901.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.70794223450694	6.50436462161203	6.73028039538936	6.55349380029761	6.65917583038673	7.07249917577318	0.195704467559475	0.491040135792228	0.830342687115936
Merged-chr3-135628993-2	chr3	135628503	135629503	+	575.0	f0_balb.idr|f1_balb.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62544.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.40827886499855	5.24388837921927	5.45165960715201	5.31799851879228	5.51961338858676	5.64878481635633	0.257921057298459	0.450551032366549	0.808443910792592
Merged-chr13-101763818-2	chr13	101763318	101764318	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	4399.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.21326115611179	3.76206774488951	4.00664960713358	4.27901618224875	4.46983135626565	4.48289152053277	1.11349097293715	0.0254456706285394	0.189095678299334
Merged-chr12-3391555-4	chr12	3391062	3392062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	26430.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	6.80052368876635	6.86889613705473	6.26769618389827	7.40216111379005	7.61170968782536	6.90752744513236	1.00633031898128	0.0015705787781746	0.0256294800891061
Merged-chr18-38417515-2	chr18	38417015	38418015	+	740.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1392.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.49350322084661	3.65521155055392	3.39531468013778	3.60334317603492	3.64837605047635	3.79054699391516	0.535756110563996	0.347687871422657	0.735712239791888
Merged-chr16-57555125-4	chr16	57554630	57555630	+	956.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5888.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.61436828284841	6.45100112416792	6.3692268417125	6.56567440551505	6.70235738527906	6.50420052765808	0.179853224108217	0.50222388544527	0.836366262631032
Merged-chr4-53084019-2	chr4	53083519	53084519	+	706.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 14 of 49)	intron (NM_013454, intron 14 of 49)	72139.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	3.17707456642703	3.29891888826908	3.41521800486206	3.24496997695296	3.29744960307108	3.53687393878243	0.251762807867254	0.683464861800629	0.915437828512898
Merged-chr10-8808030-2	chr10	8807571	8808571	+	622.75	f0_balb.idr|f1_balb.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	77999.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.06778624656604	3.27615255360579	3.20420217649293	3.05389345371776	3.15626225408214	3.03973154611428	-0.423576834901389	0.516848315443568	0.844321671216418
Merged-chr5-121409073-4	chr5	121408568	121409568	+	876.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 3 of 23)	intron (NM_172722, intron 3 of 23)	11086.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	3.51372024353894	3.36840804816065	3.84240471073618	3.41795982094095	3.27249437059546	3.62491659020413	-0.519838604807991	0.397829156209973	0.774593722474986
Merged-chr8-105965590-4	chr8	105965079	105966079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045594, intron 1 of 23)	intron (NR_045594, intron 1 of 23)	536.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	6.0081328382309	5.79357484682325	5.80923847346916	5.32209030984842	5.28964169440625	5.52591291516958	-0.941081876795905	0.00378745049210803	0.0499509838259978
Merged-chr2-33090161-2	chr2	33089661	33090661	+	861.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-2908.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	2.15783349367761	2.21341143428331	2.50208263417136	2.37887169390094	2.38887407253203	2.51423239840393	0.865338304197445	0.316952722064228	1
Merged-chr3-153975886-4	chr3	153975379	153976379	+	849.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081263, intron 1 of 21)	intron (NM_001081263, intron 1 of 21)	2443.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	2.48076529019526	2.61742278280454	2.68856145749485	2.62107458439017	2.672296742425	2.82133495332279	0.604202505922832	0.426840241987688	1
Merged-chr12-8345045-3	chr12	8344534	8345534	+	822.638855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31601.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.8205666038045	4.10451716392228	3.82378144380112	3.4482275427401	3.39800030033524	3.79317515481464	-1.29361526074796	0.0251944344157295	0.187906015521742
Merged-chr7-24082222-1	chr7	24081722	24082722	+	1000.0	f0_c57.idr	5' UTR (NM_001045486, exon 1 of 5)	5' UTR (NM_001045486, exon 1 of 5)	325.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	5.62385901458975	5.68014271621072	5.82714492629624	6.21889248891736	5.83609030099275	5.98376470128496	0.556367107749344	0.0770897634452544	0.365994676965629
Merged-chr11-114852537-4	chr11	114852001	114853001	+	897.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147217, intron 1 of 3)	CpG	471.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	6.91177171913948	6.97184892972961	7.0963373927627	6.72993715799454	7.06178973461878	6.78013909956838	-0.17860209824519	0.490512402876906	0.830053405840466
Merged-chr5-140830032-2	chr5	140829532	140830532	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010302, exon 1 of 4)	exon (NM_010302, exon 1 of 4)	399.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	6.82385219970545	7.14680364536184	7.1370403541561	6.69144842973154	6.58793088562744	6.86996201631916	-0.508033582774981	0.0546971827703544	0.300379625847683
Merged-chr5-123865616-4	chr5	123865105	123866105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030701)	promoter-TSS (NM_030701)	-89.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	6.67960823570565	6.38783265401502	6.36273155807532	7.007098688446	7.2546682965106	6.61393794404502	0.791716461505525	0.00780739367869	0.0846034035499675
Merged-chr9-40631343-4	chr9	40630832	40631832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-54632.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	4.28291219330151	4.35989869464544	4.33226934924032	4.50807476644873	4.33625108254697	4.52726831742074	0.332232554571525	0.449771043177623	0.808012616706586
Merged-chr1-170361461-3	chr1	170360957	170361957	+	849.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	52596.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	3.06542119980938	3.28873685527993	3.07487744271732	2.83226697032157	2.66379831490187	2.90559556555668	-1.78745193274454	0.0152624651813872	0.134245158859711
Merged-chr11-83066041-3	chr11	83065563	83066563	+	827.133362	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	951.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	7.24129786908877	7.41580905435237	7.58949298740033	7.81105085716063	7.69862370215128	7.78636904668142	0.505948948522036	0.0290637726111472	0.204718394262959
Merged-chr8-116627356-4	chr8	116626867	116627867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029441, intron 1 of 6)	Lx8|LINE|L1	105624.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	6.57588824887813	6.71846711019146	6.37642248440866	7.33211106822604	7.61038563754522	7.16917020565086	1.24513610398827	4.5911985729997e-06	0.000205721298256413
Merged-chr1-37308816-4	chr1	37308303	37309303	+	998.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8965.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	4.68161735361652	4.49724402910837	4.80603624120376	4.93507841308796	4.62098694781863	4.26627929557179	-0.0445824682538148	0.922766796330126	0.982621045978137
Merged-chr4-101670600-3	chr4	101670105	101671105	+	634.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	22822.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	2.92812955979024	3.15250417615334	3.25272118775863	3.03051044666572	2.74140509841884	2.85632729141411	-1.11292663731767	0.12165033859774	0.466615100449027
Merged-chr8-83998456-4	chr8	83997957	83998957	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081415, exon 1 of 5)	exon (NM_001081415, exon 1 of 5)	785.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	4.43689795831528	4.54060261029438	4.40552643376397	4.15515329263993	4.20503019524117	4.10102745304475	-0.819618122419652	0.0711374130965572	0.349837375442467
Merged-chr10-99130815-4	chr10	99130304	99131304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	22669.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.39845141415326	4.18599672950937	3.94045478972049	4.09029664525219	4.09991022477679	3.90397861772754	-0.445484423581234	0.378858216073956	0.761376544369668
Merged-chr12-40379694-4	chr12	40379190	40380190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	66100.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	4.14058754463238	4.03825360613624	3.91009081035644	4.10769618172388	3.80389355751489	3.92894319409078	-0.263858520260424	0.603704387512095	0.882783590954895
Merged-chr6-134828962-2	chr6	134828537	134829537	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1162.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	5.2894134534195	5.41500867497467	5.18670794148765	5.49912627923982	5.65089898678989	5.84361711546958	0.683267277924125	0.0452240315639461	0.268383226472636
Merged-chr8-11550756-4	chr8	11550219	11551219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024248)	promoter-TSS (NM_024248)	52.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	6.22766445881161	6.33719776489013	6.12055373662798	6.23298762113927	6.22978973447002	6.32543117481291	0.0362224693567805	0.896306400729551	0.975806926657291
Merged-chr3-32403292-4	chr3	32402792	32403792	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32859.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	5.57492893900794	5.81092414343061	5.90666210613043	5.64987473345522	5.62255274246644	5.55824179957408	-0.278884742147677	0.384785711780109	0.765926259647846
Merged-chr5-121871203-6	chr5	121870677	121871677	+	913.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	22180.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.95182622163165	3.33399227531013	3.69803112543427	3.3685019080925	3.24019528553392	3.38966856295809	-1.31538075842079	0.0376336138306762	0.239845108733372
Merged-chr8-72303326-2	chr8	72302826	72303826	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15736.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.84354012315444	5.8152019088002	5.82338466771141	6.12536974732315	6.18450735252607	6.30077372541544	0.64673668154648	0.0251727933889329	0.187837856314714
Merged-chr14-69805486-5	chr14	69805004	69806004	+	971.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153514)	promoter-TSS (NM_153514)	41.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	6.4645045429876	6.3876961036524	6.49851273693705	6.60074134471413	6.35720463962075	6.64108213024251	0.133468218143383	0.621996772360895	0.890931597572866
Merged-chr10-94393805-2	chr10	94393305	94394305	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	81856.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.35459715696992	4.56272855475898	4.51641693382183	4.22503736898136	4.61336454428913	4.58266700279075	0.0192692615823395	0.965757525506661	0.992046617808701
Merged-chr2-112264167-2	chr2	112263667	112264667	+	787.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2147.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	3.04794137335732	3.06909111074483	2.98450186993061	3.22815980713884	3.50257821979547	3.66982531832247	1.82973204239201	0.00634347910435699	0.0727617480735671
Merged-chr13-3373155-4	chr13	3372699	3373699	+	973.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105104.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	5.73993436471002	6.6045669379545	5.27214345880271	5.06928225559871	5.67414661854563	5.15087275987659	-1.2182742503785	0.108507231020724	0.440122339805614
Merged-chr2-30135086-4	chr2	30134585	30135585	+	924.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1339.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	7.05363067829174	6.94814022470255	7.21869702258693	7.3856963682012	7.45285583421991	6.94960034595164	0.328200388183134	0.215956678717898	0.609335600128232
Merged-chr12-4841605-3	chr12	4841090	4842090	+	966.611145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	5.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	4.90868736330114	5.20460605649167	5.23134124075637	5.16742512237492	4.9697289852298	5.32466281204005	0.0676454682698459	0.858267830936535	0.966867261603628
Merged-chr3-122245527-5	chr3	122245020	122246020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008129)	promoter-TSS (NM_008129)	-37.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	6.25767378525379	6.26611488043784	6.42754259932701	6.32089988524337	6.1242246400831	6.28044860780155	-0.123233891482785	0.658157868543682	0.904937992416562
Merged-chr3-40798714-4	chr3	40798210	40799210	+	887.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1241.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	3.37452790860384	3.23490470933039	3.26244073804262	3.32804248193894	3.06450700153268	3.38990636160006	-0.128578905060766	0.839106851032541	0.962694797186053
Merged-chr10-127103836-4	chr10	127103314	127104314	+	881.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	17346.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	3.38222634622023	3.32252848315291	3.49161571697538	3.1818067392294	3.38515563186371	3.40158831238884	-0.271831114203698	0.654368013371471	0.903757094238939
Merged-chr10-25447969-2	chr10	25447469	25448469	+	884.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	39601.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.33904631634715	5.44337765633864	5.32908617743866	5.49900356062027	5.27932524087445	5.32962545320285	-0.00664294115317745	0.984404858974152	0.996597633599236
Merged-chr10-80699239-2	chr10	80698739	80699739	+	932.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	2581.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	2.71216537031926	3.07144470353414	2.99241717023348	2.9583927848412	2.86673139372027	3.49182314465851	0.862446690822934	0.254463930985124	0.65145021135346
Merged-chr13-23446801-4	chr13	23446286	23447286	+	860.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15769.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	5.01413682888115	4.95901708666347	5.2002444786992	5.16758911122678	5.40692770464858	5.06146964940998	0.370216881361571	0.318355873629402	0.712161852649298
Merged-chr19-3382474-2	chr19	3381974	3382974	+	665.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 18 of 18)	PB1D11|SINE|Alu	-6383.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	2.73459208670124	2.85956747503752	2.94102068928469	2.59982404642487	2.61255128325881	2.71472448711221	-1.11246343708534	0.137248781142244	0.495027571456897
Merged-chr6-7845020-1	chr6	7844520	7845520	+	1000.0	f0_c57.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-204.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	6.524647393921	6.43076203673724	6.47930100739337	6.2402978635143	5.78175480881043	5.74692930800794	-0.892890829237413	0.00372900632506165	0.0493766961005299
Merged-chr7-128002276-4	chr7	128001776	128002776	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2102.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	3.40550897296496	3.29402014524904	3.38202422650856	3.26796332924747	3.56803709011647	3.22014912505746	0.0431225776482779	0.944963781770792	0.987875414328125
Merged-chr15-59517039-3	chr15	59516534	59517534	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-131620.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.52187743358151	3.43292789352778	3.84632393687443	3.42816837905005	3.53610891203888	3.34543673638924	-0.578154796524382	0.337430272953559	0.727414835127997
Merged-chr2-128795364-2	chr2	128794864	128795864	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-22939.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.47691706968296	4.38633792630756	4.87266862106068	4.28800114490224	4.18425780139629	4.62145155566313	-0.550557520872346	0.244203866428883	0.641445650540264
Merged-chr8-94368197-2	chr8	94367697	94368697	+	553.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18232.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	2.68498477962841	2.71886583542392	2.86731222472466	2.88427076588321	2.90981330018974	3.11234037421132	1.07482389469673	0.13311790568284	0.488153715745778
Merged-chr15-73177336-4	chr15	73176836	73177836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153178, intron 1 of 18)	L3b|LINE|CR1	7611.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	5.39771483608746	4.89347124767213	4.86070229384405	5.09274920707926	5.03064659343895	4.92750035086157	-0.133825243659176	0.740216370389601	0.934499978758628
Merged-chr7-144937680-4	chr7	144937170	144938170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007631, intron 2 of 4)	intron (NM_007631, intron 2 of 4)	2255.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.81119359183201	4.82465016296324	5.23808914367774	4.66144643475867	4.95611213156042	4.55063331599488	-0.4812080891146	0.263316425429888	0.661355100581668
Merged-chr12-102450638-4	chr12	102450154	102451154	+	997.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10841.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	7.83533706377565	8.06994631212426	8.11090127780399	7.96860551461499	8.22299790633205	8.10566193741973	0.137308008259056	0.540344995069585	0.85632302227606
Merged-chr6-113307787-4	chr6	113307284	113308284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	647.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	8.11803270435097	8.44304049986427	8.39614160749398	8.09485784861201	8.51967373551604	8.5732570707104	0.121404893109993	0.6180580195835	0.889100855667229
Merged-chr7-122197505-2	chr7	122197005	122198005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11274.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	2.90090975181823	2.99084342752006	3.34129125580983	3.15556889287315	2.95990014914508	3.25249685890521	0.17110039892138	0.804097428534341	0.953557831905559
Merged-chr4-43508814-4	chr4	43508324	43509324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-77.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	6.26403164902034	6.1788352280023	6.15039837241727	5.95999270871121	6.18142091273672	6.27185121489648	-0.100815708268757	0.725741623966552	0.929707128236285
Merged-chr1-131527645-4	chr1	131527145	131528145	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175382)	promoter-TSS (NM_175382)	-258.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	6.47936306832652	6.24936496304291	6.44959197077477	6.28407601541798	6.41747181958583	6.36091926391636	-0.0592448525655587	0.828914583983823	0.959925957873127
Merged-chr7-12978876-2	chr7	12978376	12979376	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168562, intron 1 of 4)	intron (NM_001168562, intron 1 of 4)	1028.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	7.13081317359627	7.49799482742246	7.48845609148511	8.0317646001924	8.30844429107627	8.13288188901785	1.12729539130964	2.94475001035797e-06	0.000139695985668111
Merged-chr10-96377738-4	chr10	96377231	96378231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	151524.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.30306374679171	6.06769907618204	6.30823967559184	5.98882065985934	6.05189792708353	6.03626433211174	-0.340396070020242	0.237598448741516	0.634122003684586
Merged-chr14-54756556-4	chr14	54756013	54757013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25373.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	7.40466442048158	7.5726284803588	7.56440672314998	7.67017618741195	8.07465694120358	7.9998455514387	0.601798856356027	0.0117499823535159	0.112533670772485
Merged-chr11-54088461-4	chr11	54087950	54088950	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-12474.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	7.23197171331369	7.31735711052074	6.81625995146016	6.96937950893336	7.25555699780487	6.70940694901661	-0.21048218078418	0.468275252422697	0.818507839752705
Merged-chr2-90482259-1	chr2	90481759	90482759	+	580.0	f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-3085.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.13329687989167	4.32047813338061	4.46920903668256	4.623101384743	4.5949117347289	5.06660395569337	1.13615758612039	0.0127744364070663	0.119457777540928
Merged-chr3-133093125-4	chr3	133092627	133093627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-1088.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	7.26560359785888	7.53863610174101	7.00752059127869	6.97201630777795	7.4409083910362	7.03780203984218	-0.179442974595988	0.528012504455691	0.850335859569968
Merged-chr5-140616843-4	chr5	140616347	140617347	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9506.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	8.48606236318033	8.46306458298521	8.11962796892336	8.39263052016358	8.79658145315778	8.32613230375344	0.221216449210123	0.371266056951055	0.755436533897021
Merged-chr8-8334664-4	chr8	8334148	8335148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	326125.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.0628280070807	5.08447494731079	5.13266008050453	5.04611439978984	5.27730915330153	4.82871243036581	-0.0247558628566782	0.948242822442182	0.988083630162243
Merged-chr2-30464164-4	chr2	30463672	30464672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	10027.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	5.36489897390167	4.83693577056351	4.48177794097903	5.13825182323566	5.11680008737775	4.60229118401002	0.0518483405539826	0.914769552283916	0.98093269064294
Merged-chr8-92853305-4	chr8	92852806	92853806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2027.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	7.39836917477259	7.36524175485815	7.45994124884783	7.41154805802981	7.6455191593086	7.49666940753445	0.175530532205461	0.441982540073025	0.803032582797918
Merged-chr17-46649887-2	chr17	46649387	46650387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025611)	promoter-TSS (NM_025611)	-451.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	4.32400451030753	4.38612949797614	4.82841591068174	4.30864414543872	4.46200184318835	4.71849543593186	-0.0496356284296464	0.915197876409489	0.980959026698783
Merged-chr3-105932713-4	chr3	105932223	105933223	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033780)	promoter-TSS (NM_001033780)	-59.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	6.14527746063345	5.95415586419736	6.15177876813788	6.04720791417323	6.34040906130693	6.1045619490601	0.163063128829762	0.580344417650878	0.872806789923022
Merged-chr4-46565248-4	chr4	46564695	46565695	+	838.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	1245.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	7.03501458582699	6.85134592142875	7.05870452984558	6.50388829537083	6.58490162546326	6.3198471113196	-0.780403977398457	0.00309921427099787	0.0431669603383313
Merged-chr12-3868765-4	chr12	3868246	3869246	+	944.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6502.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	7.73947249290737	7.57860806145386	7.32931785385756	7.3484281945309	7.50397813225807	7.21907020047208	-0.289948861584835	0.243297399599589	0.640502592040103
Merged-chr18-4918524-4	chr18	4918019	4919019	+	827.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	106033.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	3.95014617186603	3.96348123728746	4.13245582178454	3.85766177197755	3.5681222917663	4.32383087855769	-0.205389936521546	0.717145091405568	0.926979087819795
Merged-chr4-48124942-4	chr4	48124426	48125426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	7.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	5.9788817443367	6.17195738956406	6.07963432600616	6.10337803171515	5.84573168648021	5.60342790871406	-0.355957855196092	0.260361903087355	0.6577835598224
Merged-chr4-97752436-2	chr4	97751949	97752949	+	1000.0	f0_balb.idr|f0_c57.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-25177.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	7.99790935759	8.01883702133063	7.67838329529462	7.81375833576164	8.03475627188211	7.79762751804998	-0.032620146127102	0.88909565203192	0.974207858658472
Merged-chr4-132076856-3	chr4	132076365	132077365	+	753.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1552.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.7022296703095	4.42976255667091	4.62269810619981	4.56766613281634	4.50394892271617	4.64913915430481	-0.0445133226743742	0.91603738022805	0.981201223155309
Merged-chr9-21031501-4	chr9	21030989	21031989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008319)	promoter-TSS (NM_008319)	-549.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	6.08454312431082	6.30504841737374	6.44668276341308	6.31497976339908	6.58492841783129	6.21641584252101	0.187005700257004	0.527232002743818	0.849879317389093
Merged-chr17-8283791-4	chr17	8283288	8284288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-25.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	7.78386743924215	8.04431969348275	7.84669952517526	7.98168275049514	8.01887711914502	7.45552050041853	-0.0650244691068029	0.8006469670155	0.952653061321331
Merged-chr12-76319087-4	chr12	76318570	76319570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138745, intron 27 of 27)	HAL1|LINE|L1	-5821.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	6.3122575798224	6.58328062505922	6.59146018962862	6.76065454011995	6.85765477298845	6.71568622233874	0.451579948469982	0.087930192490253	0.393468252059807
Merged-chr10-62451491-2	chr10	62450991	62451991	+	895.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_027926)	TTS (NR_027926)	-1753.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	3.23432989407638	3.36586514134287	3.45743001544555	3.10218993456952	3.43387106785021	3.30987321895201	-0.229809921516859	0.716183878211599	0.926569584146506
Merged-chr14-30694967-4	chr14	30694408	30695408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19941.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	5.84215540356759	5.53507385169648	5.56170221654779	5.20515077842286	5.106028712418	5.32873794111126	-0.876661128865608	0.0110629334176147	0.107944208332068
Merged-chr16-93683777-3	chr16	93683265	93684265	+	805.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173047, intron 1 of 2)	CpG	546.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	6.29641232523794	6.42719277869175	6.5300309069984	6.03806089630257	5.98785485107155	5.97527164808691	-0.697773351187458	0.0132370819612747	0.122226286031978
Merged-chr14-33232225-1	chr14	33231725	33232725	+	779.0	f0_balb.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	15402.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.46694873457066	4.53606499619231	4.49296493196096	3.71959701476873	3.64100712878943	3.97920073472718	-2.18678971356792	2.00341684164985e-05	0.000731462521105751
Merged-chr1-138248274-4	chr1	138247780	138248780	+	999.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25458.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	3.53747958964493	3.05587499265324	3.44009628542	3.43002101659587	3.2974289194416	3.40160197919794	0.0590534762267158	0.926733969321327	0.983568563710725
Merged-chr7-127471855-4	chr7	127471354	127472354	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145589, exon 1 of 11)	5' UTR (NM_145589, exon 1 of 11)	240.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	7.36214028602722	7.30195303029367	7.59712535431415	7.35740851170168	7.63716138089886	7.75779459986786	0.251777290024677	0.308980951603517	0.704802606494279
Merged-chr2-180702057-4	chr2	180701555	180702555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	47.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	8.46651878259859	8.99337835679133	8.24747016231623	8.35410073473054	8.46581258285211	8.36595725273311	-0.304008081019566	0.246492358387387	0.64358792567235
Merged-chr19-23136014-4	chr19	23135510	23136510	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5216.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	8.06931349329655	8.40096845915283	7.92439295137233	8.08539226646379	8.40718650117417	8.17816927934552	0.113255427343813	0.642669129130117	0.899466331938237
Merged-chr14-103929983-4	chr14	103929506	103930506	+	974.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85530.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.12839004174494	4.4295762251371	4.13495639663038	3.95062458990774	3.95357798782376	4.00931453102225	-0.79368103355626	0.105546450645138	0.433651445056324
Merged-chr11-70458342-3	chr11	70457913	70458913	+	625.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151499, intron 3 of 5)	B2_Mm2|SINE|B2	-1020.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	6.26543808441309	6.65886504302765	6.38888257669418	6.63572857288509	6.65603379188892	6.89925841276669	0.439924172297929	0.118711919708169	0.460502630073537
Merged-chr17-74668105-4	chr17	74667598	74668598	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007566, intron 62 of 72)	intron (NM_007566, intron 62 of 72)	-49652.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	4.91875390239564	5.09354170963015	5.04391185688925	5.5823966143723	5.91151832116169	5.61556261532964	1.37406214908942	8.99608133606856e-05	0.00259551295357695
Merged-chr18-36348443-7	chr18	36347944	36348944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081365)	promoter-TSS (NM_001081365)	-180.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	7.5963727618641	7.67546322777299	7.05897000978337	7.17913533987592	6.86204168253814	6.41751491168501	-0.916800594173325	0.00405592623879179	0.0524729765404679
Merged-chr2-27732287-2	chr2	27731787	27732787	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	21704.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.62381634687076	5.79499055703092	5.82242039159607	5.96511545031451	5.68745448090795	5.90776605198743	0.190219984233937	0.544301596350205	0.85765692399006
Merged-chr11-80156934-4	chr11	80156430	80157430	+	973.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	6.65200552416994	6.89778231910785	7.01428151487647	6.96429703439809	7.21927847013518	6.87836419294653	0.275555000432135	0.301137764878941	0.697832487817053
Merged-chr7-44527701-4	chr7	44527180	44528180	+	932.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019866, exon 6 of 6)	3' UTR (NM_019866, exon 6 of 6)	-3011.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	5.76009143103209	6.15049515552922	4.99076706891891	5.15807187051107	5.13710650986671	4.84413709464971	-1.29281340119122	0.00389114252823746	0.0508801211208985
Merged-chr3-44711259-2	chr3	44710759	44711759	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus4|LINE|L1	667001.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	1.70147739294596	1.88721411119893	1.77320349088001	2.05461799890882	1.94543838362968	2.1940587166873	2.46989381453307	0.0274905243186759	1
Merged-chr19-3389323-4	chr19	3388837	3389837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286557)	promoter-TSS (NM_001286557)	-41.0	NM_001286557	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	8.19202606127652	8.30311222581537	8.12678042182964	8.11881536609268	7.97929981912745	8.16925994836842	-0.17511479030803	0.408404994315465	0.782032951304577
Merged-chr8-40294490-4	chr8	40293980	40294980	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7527.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	4.77185599863745	4.71727047117894	4.20549055565037	3.85636908853463	4.01072320453649	4.07356447029809	-1.68074208212574	0.000815007263528466	0.0153678019531761
Merged-chr2-60282079-3	chr2	60281567	60282567	+	882.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025422, intron 1 of 4)	B4A|SINE|B4	2417.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	5.9504601645625	6.0686145749631	6.05972349805054	6.10442503319283	5.80621549946905	5.81005933878524	-0.193136254023682	0.523372702364245	0.848188188060079
Merged-chr11-120355179-4	chr11	120354682	120355682	+	943.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-6352.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	5.12225479855583	5.10112365119606	5.39050088389194	5.28263417279168	5.1037364816956	4.96189494659071	-0.152442463010173	0.680990325221824	0.914522966124234
Merged-chr13-31228089-3	chr13	31227592	31228592	+	648.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045957, intron 1 of 2)	intron (NR_045957, intron 1 of 2)	12994.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	4.66779696399373	5.04395090825134	4.38925998724959	4.40142142519927	4.47128692996505	4.31434518776891	-0.821915708837166	0.0763481713666233	0.36384757405922
Merged-chr15-64079152-3	chr15	64078696	64079696	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB7|LINE|L1	-18748.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.24369228586883	4.20451156636578	4.14456799787788	4.64220204640023	4.19732870297272	4.52536983652702	0.687123369772926	0.143448931452663	0.505574089894244
Merged-chr17-69181421-4	chr17	69180922	69181922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22066.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	8.06899224225216	8.44056683167519	8.02096974969311	8.15901834867901	8.50839595114287	8.09889374785564	0.110202129853644	0.659120155699728	0.905229020277098
Merged-chr2-77282342-4	chr2	77281864	77282864	+	852.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1772.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.91734129480766	3.93667487627507	3.91145062114389	3.98260381423385	3.9420042290468	4.25549115525636	0.405221390184589	0.418639690097711	0.788726823651631
Merged-chr10-7937800-1	chr10	7937300	7938300	+	756.0	f0_balb.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	15265.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.51352439267432	4.12619991242391	4.68712839815902	4.57558812197761	4.58891281153756	4.51648583304896	0.270867035949367	0.553728079498014	0.862464539420562
Merged-chr7-118482615-4	chr7	118482141	118483141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9334.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	7.12470778524015	7.07444600320083	7.22667512570311	7.27331707078938	7.38060743253077	7.26084480591711	0.255242367155528	0.272176496375676	0.66953956602346
Merged-chr11-116024406-7	chr11	116023910	116024910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	94.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	7.25434366924574	7.19912324546118	7.47831156031809	7.00382160694702	7.16405026684965	6.95233562166129	-0.390530351786997	0.113053635171128	0.449191427529329
Merged-chr5-122145925-4	chr5	122145448	122146448	+	990.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7886.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	6.40242450065421	6.47221874983408	6.76213277065354	6.78225614458634	6.71421100849219	6.89187753659164	0.393677800135217	0.141530570121313	0.502216541372947
Merged-chr3-51328667-4	chr3	51328165	51329165	+	908.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	11979.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	6.90135579702742	7.02730988543979	6.90901973973094	6.96244149436986	7.20402097620582	6.87960551678163	0.126796298015474	0.615833054103845	0.88811014762473
Merged-chr8-60977454-2	chr8	60976954	60977954	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	5857.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	5.53434912920721	5.64883971676768	5.26107597731226	5.59012971823891	5.69912677419292	5.18381606424991	0.0419528710618752	0.908370252230213	0.979259582109985
Merged-chr8-80880535-4	chr8	80880024	80881024	+	961.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301298)	promoter-TSS (NM_001301298)	-5.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	5.75837373556962	6.019991718262	6.29896285400507	5.76379476282044	5.5328732530924	5.81405406585576	-0.593881468927376	0.0736784183291744	0.356722555122422
Merged-chr7-97029329-4	chr7	97028832	97029832	+	988.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-52419.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	6.40753687065859	6.81866982696936	6.58918410824146	6.40178168702979	6.63865671930307	6.43443483247097	-0.187057242799936	0.508763004469044	0.839976825982384
Merged-chr12-83689752-2	chr12	83689252	83690252	+	843.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	1189.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	6.87024756029004	7.10216217081148	6.98138787037237	7.3797207070379	7.46301203162158	6.80089153491252	0.408989319271865	0.150341634573276	0.517246479850651
Merged-chr13-119791430-2	chr13	119790941	119791941	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-319.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	7.46326171950215	7.89903078651892	7.53682475057081	7.5673543365139	7.70745884620114	7.44907988064919	-0.0995300858003689	0.691051671483295	0.91812801462051
Merged-chr16-38432959-7	chr16	38432431	38433431	+	967.5238039999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134102, exon 1 of 11)	5' UTR (NM_134102, exon 1 of 11)	214.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.75145672761255	3.65771916188584	3.99553326308027	3.72976115525716	3.60067651292928	3.92587462555187	-0.1657985380657	0.762327255928442	0.941552504399722
Merged-chr1-85273928-1	chr1	85273428	85274428	+	925.6666869999999	f1_balb.idr	Intergenic	Intergenic	-3362.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	3.78131956580398	3.70062772321817	3.72370521693978	3.1136024087948	2.93854176351022	4.26506247575331	-0.245342139457988	0.876126096685657	0.971185372218754
Merged-chr13-54691079-2	chr13	54690579	54691579	+	719.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027396, intron 1 of 10)	B4|SINE|B4	-2879.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	3.23743800558175	3.3481234086469	3.56745324075847	3.19657155072228	3.06507390826524	3.5372519682111	-0.446943226946602	0.492985453659235	0.831208279358962
Merged-chr7-80341081-4	chr7	80340611	80341611	+	951.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-892.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	3.97315353797618	3.69047109348549	4.18418846550617	4.01567603555633	4.00898036022634	4.37441634041302	0.525110828588944	0.320804426662343	0.714576061099323
Merged-chr14-57798171-4	chr14	57797686	57798686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-3.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	7.40566079767237	7.49606046354706	7.73673281396567	7.45735296330612	7.44695093122248	7.37549277030538	-0.173323029054936	0.459273581504342	0.813540174773561
Merged-chr12-101082930-4	chr12	101082420	101083420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_038047, exon 1 of 4)	non-coding (NR_038047, exon 1 of 4)	469.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	8.17991407081221	8.74654350987312	8.47092714652659	8.27394900640617	8.46140667704124	8.3258654609728	-0.182898539184773	0.448877934375942	0.807454029128485
Merged-chr17-80062922-1	chr17	80062422	80063422	+	725.0	f0_balb.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-654.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	4.82273633469678	4.99178101356078	4.79640309661708	4.44567669431903	4.46109086690618	4.54093848840052	-0.94618788654826	0.0207480976994157	0.165412255760561
Merged-chr6-72990400-3	chr6	72989892	72990892	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31644.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	3.36374460700189	3.8282689401453	3.65295165628661	3.55565486688276	3.65706322476408	3.77365885848395	0.104723264915866	0.857681689748567	0.966785186918462
Merged-chr4-114652589-4	chr4	114652095	114653095	+	976.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169125.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	4.06667509563123	4.35148900732939	4.3933484993195	4.10457655775507	4.25702368560462	4.19810041301829	-0.228590986558893	0.629213428812084	0.894111604640856
Merged-chr3-142295428-3	chr3	142294936	142295936	+	615.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96414.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	3.04569903167553	3.172460334234	3.49116578790123	3.26226840512416	3.40350178763316	3.75351973648535	0.929484196271006	0.158563076582893	0.530390911691518
Merged-chr6-88499517-2	chr6	88499017	88500017	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19283.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	3.11083217044103	3.02849923673564	3.03781815235502	2.80707126973402	3.01080784231997	2.99106201661061	-0.554564956949543	0.417798830342121	0.788328494227065
Merged-chr2-90517307-3	chr2	90516809	90517809	+	740.688904	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-38135.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.898630585169	5.83278324418937	5.92436123154254	6.3184257739034	5.8418041619065	5.67115240325448	0.168463145035811	0.613524500671488	0.887280050499927
Merged-chr15-66577976-3	chr15	66577466	66578466	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081409, intron 1 of 20)	CpG	394.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	8.08091313660937	8.18879468054448	7.9867438724217	8.10596184559696	7.98132011859586	7.86091843017916	-0.144514040200438	0.506677214227079	0.838542828803423
Merged-chr1-138244640-4	chr1	138244114	138245114	+	901.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29124.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	6.10123981935715	5.68292719037902	6.01354032330429	6.18161464971757	6.06690378489814	6.30099133479497	0.409883788687721	0.184868780064915	0.568860672742926
Merged-chr4-132040306-5	chr4	132039776	132040776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	8802.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.65960751289328	7.71956301170462	7.45489060801556	7.77347365193222	8.0828748839706	7.85619791165525	0.421573430263418	0.0714885669150363	0.350732351171364
Merged-chr19-55803985-2	chr19	55803446	55804446	+	554.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	62136.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.00464615450229	3.73483693216878	3.85967366888419	3.7705604088261	3.71310077444395	3.61045966183931	-0.54879528501234	0.307783341730547	0.703860357236263
Merged-chr7-44551552-2	chr7	44551052	44552052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009473, intron 6 of 9)	intron (NM_009473, intron 6 of 9)	2413.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	2.20184228494381	2.06842120809891	2.26725304641538	2.10502202401072	2.00231626312557	1.93615832825103	-1.25533175484004	0.189382661801304	1
Merged-chr7-25790301-1	chr7	25789801	25790801	+	543.0	f1_balb.idr	Intergenic	Intergenic	-1568.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.09320737936255	4.08544064409178	4.47822238484435	4.14135215150473	4.10710469406637	4.50512672233406	0.088187854132497	0.858456194567446	0.966933063363181
Merged-chr12-9030999-4	chr12	9030505	9031505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029321, intron 1 of 2)	intron (NM_029321, intron 1 of 2)	1008.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	7.28149001119487	7.76296870626839	7.2271690244914	7.53965618499887	7.57532407055787	7.59670804065	0.165939125488462	0.523958394477808	0.848448576193625
Merged-chr9-120492610-4	chr9	120492116	120493116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	10.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	7.74955246898559	8.12390731364934	7.73439410284854	7.50709495342133	7.41758603516401	7.09356195048466	-0.766057859916112	0.00303153664848479	0.0424445736912539
Merged-chr17-29394605-1	chr17	29394105	29395105	+	1000.0	f1_balb.idr	Intergenic	Intergenic	33691.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	8.57909886919398	8.27654960553312	7.86862987942254	8.43633908321983	8.85208370943198	8.20931802352484	0.351722477245251	0.220873532946287	0.615590183533568
Merged-chr17-10392588-1	chr17	10392088	10393088	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-63628.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	8.16272701802897	7.95101918766133	7.81360353890008	7.88200920707298	7.84796462150801	7.76659680318219	-0.219882691230753	0.328913498160038	0.721070592936384
Merged-chr3-27198786-4	chr3	27198290	27199290	+	950.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	15786.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.79292608353803	4.69199669592239	4.25698599565336	4.50465909940521	4.48289671385215	4.68157842542702	-0.143046650795471	0.750936574798029	0.937674068369247
Merged-chr3-65959102-2	chr3	65958602	65959602	+	665.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	-853.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	7.70547019327832	7.57476425445992	7.32381040312795	7.63655530478726	7.71409804167564	7.2609153852912	0.0147942094287337	0.95417303701302	0.989495550016789
Merged-chr1-189867164-3	chr1	189866654	189867654	+	718.027771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	55137.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	3.67436813904971	3.86616843024894	3.83122589587036	3.11464425656185	3.32936318985915	3.49177251529929	-1.78184760541863	0.00429375370600026	0.0548808999030522
Merged-chr17-8988308-4	chr17	8987834	8988834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347544)	promoter-TSS (NM_001347544)	1.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	4.67605968499712	4.80705500704041	4.2664340752321	4.46674830784468	4.47797895709152	4.33685995078937	-0.449514510805427	0.32476570172569	0.71770701447974
Merged-chr10-63347354-4	chr10	63346865	63347865	+	906.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-8330.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	5.4270818659844	5.78857420533825	5.34960009308018	5.85786255819126	5.96881680974109	5.54203973704433	0.484826424347003	0.166725969691066	0.542310936854623
Merged-chr9-59486762-4	chr9	59486261	59487261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019927)	promoter-TSS (NM_019927)	-387.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	8.83436925116451	8.54476091185811	8.36609946816998	8.5135704558827	8.45100089146831	8.33627773598827	-0.227589133624152	0.317969718108321	0.711781343099652
Merged-chr9-57073124-3	chr9	57072622	57073622	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110351, intron 1 of 21)	CpG	1082.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	6.95872817053344	7.14855588090435	7.31930427265532	6.83523404878088	7.12385386741017	7.11247732266773	-0.171616273779849	0.506906045130179	0.83862487728784
Merged-chr11-6497848-3	chr11	6497349	6498349	+	775.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21773.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	3.08422001532046	2.85040749026659	2.95265570082554	3.39557324428308	3.84945647878481	3.72407267819113	3.10448719486757	3.33656311755689e-05	0.00112674003200354
Merged-chr6-8687374-4	chr6	8686861	8687861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71097.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	6.25984671942309	5.94871167824825	6.28467694390705	6.13090864126873	6.22086207549446	6.09685483465767	-0.0208846604429002	0.943323413117381	0.987377570608805
Merged-chr9-90198075-4	chr9	90197553	90198553	+	962.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35075.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	2.92392616788621	2.93820005959359	2.84237259312678	3.18144728403964	2.87994454813036	3.15806840505132	0.793835837467216	0.253804205077164	0.651117231535132
Merged-chr6-57703298-4	chr6	57702805	57703805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133737, intron 1 of 8)	CpG	850.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	7.14636951021652	7.19442269225085	6.91059919767992	6.93858831766641	7.2766001410153	6.89499078963707	-0.056400590693154	0.830757266081985	0.960370002015736
Merged-chr12-85588781-3	chr12	85588286	85589286	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10319.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	3.99827259175369	3.87676101764014	4.13059746184206	3.96653810142771	3.76700173576138	4.06263498168586	-0.214410790202749	0.674536387404674	0.911852710156386
Merged-chr1-155146845-4	chr1	155146340	155147340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-26.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	7.02755758553065	7.52108670517992	7.05842176477042	7.24137141747581	7.59904727169534	7.20682764525045	0.205819973548038	0.462420040513757	0.815216103160031
Merged-chr7-67227361-9	chr7	67226876	67227876	+	786.037048	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_175215, exon 3 of 3)	3' UTR (NM_175215, exon 3 of 3)	4760.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	2.72999346637218	2.47279023773665	2.69288100213816	2.52099569141628	2.51796906241578	2.58007647645022	-0.562612969259091	0.471918936648328	1
Merged-chr7-44987997-2	chr7	44987597	44988597	+	846.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045266, intron 1 of 1)	B1_Mus2|SINE|Alu	1197.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	4.51397580235526	4.21060723296394	4.51084976998434	4.40595099448675	4.57303431875002	4.22023541580131	0.00804249818943807	0.986100916154291	0.997033990984076
Merged-chr15-54921142-3	chr15	54920636	54921636	+	863.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-990.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	3.51785855803359	3.59732799090894	3.6616927204643	3.76316063151069	4.05458457458157	3.73279057555651	0.922882996894418	0.0930336744868019	0.406374548333771
Merged-chr2-131254602-2	chr2	131254102	131255102	+	567.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-7406.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	3.99720469312787	3.85548005213696	3.94366152301521	4.04622998345161	3.84616494957437	3.69662419239824	-0.177664189627057	0.733446775102635	0.93209071038931
Merged-chr14-31413912-4	chr14	31413412	31414412	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	MLT1K|LTR|ERVL-MaLR	3765.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	6.74476918453047	6.65631402827284	6.85186851939534	6.91767556326909	6.98141475233522	6.82175675912757	0.257270667638295	0.302682193213403	0.699306599151639
Merged-chr1-43506885-4	chr1	43506371	43507371	+	867.966675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	61120.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.39721444705075	6.00930519611279	6.04468050989908	6.57350052564674	6.76008899074761	6.56830945085744	0.769721222566107	0.00797037136657113	0.0858843124410322
Merged-chr1-155982929-3	chr1	155982448	155983448	+	886.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Charlie10a|DNA|hAT-Charlie	-9693.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	4.28126459763352	4.05401528049976	4.51387511744874	5.49006564274587	5.65831089697457	5.03606366368909	2.64717171030158	2.30197548709877e-09	2.3853396803302e-07
Merged-chr5-130029333-4	chr5	130028817	130029817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007761)	promoter-TSS (NM_007761)	11.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	7.19089641236755	7.57148601292762	7.62475312749556	7.23802450638472	7.46732896529258	7.29861329948948	-0.192766762390603	0.448008893999528	0.806968807271626
Merged-chr5-124095973-4	chr5	124095479	124096479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019875)	promoter-TSS (NM_019875)	-181.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	3.70613529151762	3.70078744654349	3.7253734843836	3.64263772667684	3.4880609988898	3.34818412019901	-0.731344971171139	0.201501614060623	0.591016472302736
Merged-chr4-9130336-2	chr4	9129836	9130836	+	677.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138957.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.23243211719976	2.26480432408378	2.40777296750069	2.13778547927589	2.19187000324194	2.29140671939479	-0.655835607548218	0.447995119959558	1
Merged-chr1-165642017-4	chr1	165641497	165642497	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7456.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.71604640158902	7.89907591188257	7.61140090669661	7.65087612173154	8.03917277078333	7.53872631212615	0.0278900935059412	0.912618916939129	0.9803740348902
Merged-chr17-67356745-2	chr17	67356245	67357245	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2254.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.52060784251353	2.23158780711762	2.47565598485465	2.61360787105309	2.33866836044213	2.67583479620478	0.796116778611086	0.350723972191549	1
Merged-chr4-34466037-4	chr4	34465533	34466533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8b|LINE|L1	-84582.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.29291680269678	3.29633630931218	3.81422002599412	3.42602852168214	3.05522929329074	3.54929944265227	-0.480757178115235	0.474136336510445	0.821276000840332
Merged-chr18-67324521-4	chr18	67324019	67325019	+	959.8916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033214, exon 2 of 4)	non-coding (NR_033214, exon 2 of 4)	-19045.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	2.37272341220887	2.40897348307946	2.65243340326462	2.42234835634707	2.4767850267181	2.4789223639928	-0.112947675693562	0.888604023209184	1
Merged-chr15-96461941-2	chr15	96461441	96462441	+	921.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1098.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	6.90952374143225	7.19562031686689	7.08237576349064	6.82775853205149	7.08539739510644	6.61701602914509	-0.301884117937699	0.266877003515564	0.664366042575028
Merged-chr4-89381932-4	chr4	89381446	89382446	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-70914.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.93524398463905	3.90046164999548	3.85106552160417	3.69663414567278	3.76860241675241	3.87032534911349	-0.387103410342057	0.453687796804148	0.809939157597879
Merged-chr3-130873963-4	chr3	130873487	130874487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143589.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	6.73385911113579	6.80102911610344	6.44984735703222	6.01256118898153	6.31097943336577	6.18802158869214	-0.808413636806161	0.00476734867555192	0.0592689364181512
Merged-chr8-111821319-4	chr8	111820807	111821807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011801, intron 5 of 6)	(A)n|Simple_repeat|Simple_repeat	33003.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	3.22970011430715	3.03761228770657	3.04718616308369	3.09877644103041	2.89697253278477	3.17828675601007	-0.235402713285338	0.726264498609258	0.929763581417168
Merged-chr7-4996148-4	chr7	4995652	4996652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026741)	promoter-TSS (NM_026741)	-51.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	3.50580488544475	3.36198004378637	3.54474783828729	3.60299678848688	3.24077893553734	3.7162753174698	0.209064556504477	0.731502442690243	0.931440697375086
Merged-chr5-122392278-4	chr5	122391810	122392810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	432.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	8.54878125920153	8.65944953833074	8.5172055721703	8.4489659927425	8.80740436878954	8.43389012949523	0.00473628710164802	0.983003754411922	0.996200895077944
Merged-chr12-73359725-3	chr12	73359220	73360220	+	973.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49843.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	2.48039465988695	2.52778859267951	2.53643858251138	2.93220639142524	2.69427103977886	3.09808072864276	2.25559360384264	0.00562234583688906	0.0665843247915672
Merged-chr15-75923453-4	chr15	75922960	75923960	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-1900.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	4.07720066010148	3.74457977970186	4.22247131972043	3.86047884767224	3.50942619985338	4.07421992623934	-0.60377674389545	0.291170657740554	0.688953195964171
Merged-chr18-34960051-1	chr18	34959551	34960551	+	541.0	f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-5700.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	3.20189345253319	3.20632015078408	3.37029370987	3.2458002124135	3.27989162565895	3.33177141804775	0.115838514461983	0.8501032558599	0.964801567373977
Merged-chr4-100548145-4	chr4	100547624	100548624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033773, intron 9 of 9)	intron (NM_001033773, intron 9 of 9)	69257.0	NM_001033773	381534.0	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	3.91590215668473	3.70197986624009	3.90320892070735	3.7752364896361	3.82866615219983	3.92346251565422	-1.4964456039999e-05	0.999977044446643	0.999986582743456
Merged-chr4-128635724-2	chr4	128635224	128636224	+	954.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17105.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	3.72000929516032	3.60411439006241	3.50170350689281	3.81647336437693	3.66921925817016	3.63046134838474	0.313858974571303	0.571106459716064	0.869376721278598
Merged-chr8-69005366-3	chr8	69004813	69005813	+	784.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-83423.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	5.93536458382364	5.60188867969329	5.76433092537166	6.05375433343234	6.4139712666705	6.25883745681716	0.82955278324841	0.00771399299100691	0.0838163918510973
Merged-chr13-99028737-3	chr13	99028238	99029238	+	733.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-44173.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	4.17313718628228	4.00764510623291	4.30822481912897	3.98841532702348	4.13348566709945	4.01114121117858	-0.317603396452522	0.515301830195885	0.843525303199607
Merged-chr7-45529708-4	chr7	45529211	45530211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 1 of 19)	intron (NM_148927, intron 1 of 19)	3381.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	3.42088759600719	3.17567301884142	3.53943324872267	3.08177368559824	3.05768250924454	3.11788086265852	-1.26273256174113	0.0537561676511022	0.297284540603011
Merged-chr4-8863930-3	chr4	8863444	8864444	+	661.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 36 of 38)	exon (NM_001277149, exon 36 of 38)	112620.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.28938968024414	3.46060839151616	3.70707873629915	3.9331003598182	3.67855505493107	3.77718544924464	1.07875197337678	0.0635832617097399	0.328628539609836
Merged-chr19-32757510-4	chr19	32757022	32758022	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008960)	promoter-TSS (NM_008960)	-55.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	7.68922099223303	7.53608062522432	7.41746960934453	7.73458408404312	7.53904920223606	7.38663981794918	0.0121763789951559	0.95949797857426	0.990225334274391
Merged-chr17-47756297-7	chr17	47755823	47756823	+	744.4523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	18392.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	6.62602408200875	6.86307081286962	6.44005088830096	6.86602284369124	6.79103523260775	6.38028171629575	0.0664909725811802	0.820225376234841	0.95755810916818
Merged-chr2-168553835-3	chr2	168553352	168554352	+	903.9110720000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	36513.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	2.79943250070466	2.57913164600829	2.76396752689925	2.58132113232671	2.50274725194768	2.38261283801499	-1.29948624525451	0.113415088533031	1
Merged-chr2-84529350-4	chr2	84528841	84529841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22468.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.36055487115435	6.21993183942365	6.18524799026416	6.38551445236729	6.48333693384114	6.13568406725232	0.153971626222738	0.588911612492989	0.876650937479947
Merged-chr16-55972345-2	chr16	55971845	55972845	+	743.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024218)	TTS (NM_024218)	-1459.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	3.71523374817922	3.97109473449858	3.78185990804017	3.7283941991476	4.10342414045657	4.00206698147292	0.391633820099043	0.463732577800455	0.816038286358001
Merged-chr1-131439238-1	chr1	131438738	131439738	+	571.0	f0_balb.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88123.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.91052293399113	6.13969778629713	6.15279192998005	5.97352589339797	6.34677970319443	6.23347162683422	0.219333760449883	0.46614854946183	0.817366049302902
Merged-chr8-70632176-1	chr8	70631676	70632676	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_011819)	promoter-TSS (NM_011819)	-81.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	3.9808720442225	3.62807711916952	3.61260929822593	3.92268781460402	3.74833155974727	3.94620130766736	0.358474774847207	0.514662065096637	0.84317472508931
Merged-chr4-132879688-2	chr4	132879173	132880173	+	837.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	4785.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	4.5039648334225	4.35986306722484	4.27153826572593	4.21743451029865	4.20109613821406	4.24733760648874	-0.446781146203661	0.323681525076302	0.716910464718615
Merged-chr3-107781479-4	chr3	107780956	107781956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20987.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	5.2309362801509	5.22514555931418	4.98344230873829	4.77331712855848	4.89887136301091	4.82057135304086	-0.698263019374505	0.0651063344063575	0.332770809074109
Merged-chr11-22841565-2	chr11	22841065	22842065	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	18170.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.43530246679152	4.5739983928483	4.7026258559786	4.94937051368639	4.14239582478237	4.69197664283866	0.152505490737875	0.754332281003203	0.938859012739919
Merged-chr2-132249845-2	chr2	132249345	132250345	+	679.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011045, exon 5 of 6)	exon (NM_011045, exon 5 of 6)	-2057.0	NM_001141971	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	2.859130047969	2.94788482970468	2.95034799866985	2.97948747370289	3.19412044818642	3.30753414684371	1.12271355271727	0.0992766694176177	0.42004541385646
Merged-chr7-75656650-4	chr7	75656125	75657125	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-191713.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	7.63342200616189	7.68175359563825	7.21415283986278	7.07235167563463	7.06859999093145	6.85531774227008	-0.783667180529736	0.00252869755525437	0.0370566865406139
Merged-chr2-6724516-2	chr2	6724016	6725016	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 3 of 15)	B1_Mur2|SINE|Alu	-2854.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	5.6886755700103	5.78188420707983	5.4292840907246	5.16965277065695	5.39031680359683	5.5510872258282	-0.527147027198468	0.128126963619771	0.478767217032239
Merged-chr8-24437930-4	chr8	24437425	24438425	+	906.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	1021.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	5.28956477732371	5.7608431877391	5.4768796320832	5.5240741262531	5.98782007829372	5.88416028465108	0.527439139964689	0.138336064919823	0.497020805986067
Merged-chr17-26241356-2	chr17	26240856	26241856	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2886.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	5.11160887755566	5.05276769289862	4.9780045955765	5.48048571093506	5.48505862333242	5.28631265488258	0.762580295949515	0.0299032692228138	0.208500903917676
Merged-chr6-97343148-4	chr6	97342659	97343659	+	871.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-90379.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.92351655356645	4.25216352050865	4.36208151328272	4.03308234454363	3.91125945579352	4.58015764152581	0.0292121232889974	0.956621232607357	0.989887454023164
Merged-chr2-167230319-3	chr2	167229812	167230812	+	875.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008968, intron 1 of 9)	L1MB5|LINE|L1	10225.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.70837112366958	4.81293935417111	4.72636475008809	4.65606895741043	4.60498231681465	4.59023781063685	-0.315954391492758	0.431708034582889	0.797034816427545
Merged-chr1-125391982-2	chr1	125391482	125392482	+	622.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001205385)	TTS (NM_001205385)	43745.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.02365872559163	2.85106691163242	3.23365325983571	3.06232444447753	3.01499151597749	3.02120017494722	-0.0261216267305933	0.96945240880486	0.993164504846051
Merged-chr9-105759118-3	chr9	105758611	105759611	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001102607, intron 13 of 36)	intron (NM_001102607, intron 13 of 36)	50537.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	2.62344028814747	2.39175348926542	2.68683872515306	2.11301557170596	2.07836186300718	2.32253028092329	-3.31891378069914	0.00241724780950096	1
Merged-chr7-101840125-4	chr7	101839628	101840628	+	994.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001303239, exon 6 of 6)	3' UTR (NM_001303239, exon 6 of 6)	-1902.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	5.17996196736501	5.10271188168369	5.60186136214567	5.33990676483809	5.28378647778278	5.36126174611512	0.0549088128755698	0.880567626419502	0.972540920690587
Merged-chr2-90466266-2	chr2	90465766	90466766	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 5 of 23)	intron (NM_008982, intron 5 of 23)	12908.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	2.64745303809343	2.85576936936921	2.90987130452772	2.71684827170955	2.50268289188005	2.98200214909995	-0.3263328646348	0.67643778537297	0.912525597578286
Merged-chr7-44245509-2	chr7	44245009	44246009	+	569.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1213.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	4.24235837761207	3.97407942280723	3.90128979080999	4.18065728867793	3.75111360119982	4.25655374688511	0.0620962473774222	0.907354483056879	0.978893925942884
Merged-chr9-65561598-2	chr9	65561098	65562098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18489.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	7.18821785873917	7.26893985562122	7.3092504271473	7.1076737025697	7.11047056159541	6.87935146346754	-0.316030719724014	0.188732536443243	0.574222837446979
Merged-chr1-138322341-2	chr1	138321841	138322841	+	715.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48603.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	6.90373352530467	7.26908841220384	6.82106443488441	6.73139099592457	7.05042557819663	6.63347807511139	-0.294648999144719	0.301544512007377	0.698269439098038
Merged-chr6-86665119-2	chr6	86664619	86665619	+	720.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	4040.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	3.19314555748594	3.4234232225027	3.33947152775094	3.34742915643227	3.21141626536416	3.29788396389934	-0.154707101024467	0.801645419006812	0.953026989537495
Merged-chr4-99478766-4	chr4	99478252	99479252	+	990.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177547.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	6.31716313112195	6.36557956917709	5.92112970855302	6.61844157691667	6.49983533250297	5.98378294485709	0.295210284507641	0.36719798425087	0.752113401392775
Merged-chr14-70371063-1	chr14	70370563	70371563	+	586.0	f0_balb.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-19639.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	3.49595191792502	3.35680709304709	3.42315922755855	3.42733492615227	3.30961282382642	3.4389987827288	-0.143043818239129	0.808193261276131	0.954644541568446
Merged-chr13-81264729-5	chr13	81264236	81265236	+	975.5200199999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	L1PB4|LINE|L1	300662.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.51415824721222	3.67983205028122	3.75105597553294	3.33332882694935	3.25012058888325	3.51595284227715	-1.07159611078041	0.0713048358771027	0.350371613362597
Merged-chr17-72967142-4	chr17	72966643	72967643	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48838.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.1889025376588	4.43232213652806	4.60468203103097	4.69568264941318	4.15140382931737	4.84992889414196	0.436205927198584	0.376670523857218	0.759336465825071
Merged-chr4-43452960-2	chr4	43452460	43453460	+	671.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110322, intron 2 of 6)	intron (NM_001110322, intron 2 of 6)	1666.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	4.92992475284216	5.10193656110548	4.9506551213312	4.80994362851056	4.56733506505192	4.53614940891914	-0.804070918987367	0.0451358220098797	0.268090005933621
Merged-chr15-78898978-4	chr15	78898382	78899382	+	902.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	-886.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	4.98622314474984	4.94660522955383	5.37352485792038	5.13874322041919	5.24393188056174	4.78887697802502	-0.0458541621360056	0.909164843980481	0.979384717565381
Merged-chr7-24715242-4	chr7	24714753	24715753	+	913.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_199150)	TTS (NM_199150)	5994.0	NM_199150	232972.0	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	1.96887091007825	1.89929064716062	2.2195493636171	1.82539169207233	1.65165585136498	1.82983895361552	-2.64092704761462	0.0244383886146745	1
Merged-chr4-136469092-3	chr4	136468597	136469597	+	846.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	-664.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	4.86239775765092	5.02509507411826	4.90891328700367	4.31267334920321	4.30195753445319	4.71827581897513	-1.1740392667052	0.0060879323623331	0.0705129003347735
Merged-chr13-23585556-2	chr13	23585056	23586056	+	784.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290530)	TTS (NM_001290530)	414.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	7.7307995765716	7.90764223618446	7.48276528611273	7.52679699115132	7.89410269175403	7.93054820618103	0.101563299077841	0.688403845238047	0.917216444209858
Merged-chr8-46846673-2	chr8	46846173	46847173	+	922.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152560, exon 8 of 8)	non-coding (NR_152560, exon 8 of 8)	106928.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.38364524420952	4.04951817158962	4.63442101769184	4.38255470223505	4.34967941369124	4.6992218339869	0.282835207040873	0.557442721913257	0.864238755449194
Merged-chr14-75164549-4	chr14	75164072	75165072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	28147.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	8.27024049165301	8.52528609073672	8.194504201643	8.06905576817624	8.5085781435775	8.14156010417886	-0.112774821847873	0.641945780286647	0.899242836466184
Merged-chr11-72689971-4	chr11	72689445	72690445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009671)	promoter-TSS (NM_009671)	-57.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	6.88492014828517	6.83576885366787	6.9077702613378	6.6955010130521	6.83091118253552	6.82195306323197	-0.139807122203417	0.57041257145707	0.869196267207969
Merged-chr19-18671230-3	chr19	18670715	18671715	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026120, intron 1 of 7)	CpG	435.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	7.05092900151482	6.9504265655429	6.95988766904721	7.01054024099488	6.45523954374334	6.73876280031724	-0.367113289748145	0.185347591981364	0.569470877644115
Merged-chr1-59916083-2	chr1	59915583	59916583	+	893.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	3077.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	4.86406322348564	4.76176179999121	4.4510202837758	4.65862082798746	4.59714567356337	4.51984991868964	-0.282746096731477	0.505714149514219	0.838177729332582
Merged-chr5-33275158-4	chr5	33274662	33275662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310535)	promoter-TSS (NM_001310535)	-158.0	NM_001198860	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	7.00705410483886	6.50821874023133	6.56618908590511	6.93920594650883	6.30842369611861	6.62555923500041	-0.110635233323957	0.727975672500029	0.930348818287287
Merged-chr4-132555777-4	chr4	132555276	132556276	+	935.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8291.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	5.24510115001827	5.23497180562122	4.80622539936384	4.87991485685308	4.69422615506451	4.79231476802633	-0.731431801771591	0.0658851936764017	0.334993901339812
Merged-chr15-31532206-4	chr15	31531709	31532709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1172.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	5.15704930522395	5.11560458607092	5.31984067291065	4.87734638486539	4.85010457892066	5.16974836489543	-0.491914772641944	0.189588728525762	0.575509792534806
Merged-chr13-41466853-4	chr13	41466361	41467361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20499.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	7.71737505821882	7.82036362926683	7.94096238915701	7.61791000595635	7.89883952101067	7.48651620791281	-0.197944778992971	0.409708301957577	0.783037110673669
Merged-chr19-60581077-4	chr19	60580603	60581603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001172096)	promoter-TSS (NM_001172096)	-80.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	7.85418931377587	8.30494118459167	7.82519225392363	8.06561183635176	8.35649347050463	7.99291395501352	0.189050636071162	0.460445025142965	0.814520074002194
Merged-chr5-135196551-4	chr5	135196060	135197060	+	988.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011714, exon 2 of 19)	exon (NM_011714, exon 2 of 19)	9237.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	6.48529400946935	6.91590310358222	6.4923014921907	6.72532586469276	6.92323706682003	6.62253669970747	0.18051799131791	0.528496469308837	0.850563640958844
Merged-chr2-32381972-4	chr2	32381466	32382466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198001)	promoter-TSS (NM_198001)	-51.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	4.20492133495782	3.84826497051111	4.19173203230357	3.87925542267143	3.96257281453781	3.87965964851837	-0.528590746221377	0.303043788152161	0.699742029428313
Merged-chr11-5011654-3	chr11	5011146	5012146	+	900.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	24822.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	5.08388275352191	5.25106265213772	5.34902988992479	4.79478408577193	4.85052097340673	5.1708658995394	-0.612714381291344	0.107713884246165	0.438421801122875
Merged-chr4-6222229-4	chr4	6221737	6222737	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31132.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	4.36868761923002	4.06354836362222	4.67659136822028	6.55758158218606	6.88332929156047	6.59282936280877	5.06849800667021	1.57331945048658e-28	6.23394118267083e-25
Merged-chr11-54068936-2	chr11	54068436	54069436	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	81.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	7.20707952539864	6.93167790747035	7.37128459504631	7.35312831090587	7.44845497477653	7.26281870343545	0.277152441885471	0.271252731611755	0.66851481819652
Merged-chr11-114954275-1	chr11	114953775	114954775	+	706.0	f0_c57.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	6142.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	3.51504422408953	3.33105657376328	3.718925673937	3.87126285426427	3.81105440320356	4.11490047433783	1.38476674953406	0.0152012996451011	0.13396205685973
Merged-chr10-80623178-3	chr10	80622662	80623662	+	914.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	382.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	8.28871268474037	7.70417182104848	7.56412292896464	8.21536834262754	8.16173107788587	7.81948949524669	0.255307226093922	0.369884919387531	0.754352114878
Merged-chr2-164865559-2	chr2	164865059	164866059	+	593.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR31F_MM|LTR|ERVK	-7851.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	4.49116653231845	4.06906584548878	4.63641370694869	4.51948888437154	4.08492234754788	4.38247490902286	-0.19847986924218	0.689631366071377	0.917435635731004
Merged-chr11-30954410-4	chr11	30953910	30954910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025745)	promoter-TSS (NM_025745)	12.0	NM_023906	65257.0	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	6.2774803017093	5.88051186567586	5.93393551941906	6.11249150874602	5.91668224148267	5.79165525039259	-0.168098278248932	0.59598157455703	0.879784436577846
Merged-chr4-8854968-2	chr4	8854468	8855468	+	805.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_001277149, exon 31 of 38)	exon (NM_001277149, exon 31 of 38)	103644.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.38786306532279	3.48157946973363	3.69969356009164	3.58883587201315	3.67197400504828	3.95681329966328	0.760341911442357	0.18612207365559	0.57061089624098
Merged-chr7-123322611-4	chr7	123322119	123323119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 4 of 19)	intron (NM_001316713, intron 4 of 19)	47296.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	7.19680376222152	7.14215686888853	7.05524575774291	7.19429486443162	7.24684512842994	7.09991236931252	0.0750232928288153	0.749616832358622	0.937447110940518
Merged-chr11-78189027-10	chr11	78188399	78189399	+	900.511902	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_033475, exon 1 of 10)	5' UTR (NM_033475, exon 1 of 10)	151.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	4.78415885259486	4.96191929470251	4.55310501143539	5.01382417496931	4.50316964127066	4.17290086299392	-0.380649109244248	0.444294960080335	0.804143628616024
Merged-chr5-110174553-4	chr5	110174046	110175046	+	861.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040430, intron 1 of 2)	RLTR31D_MM|LTR|ERVK	1958.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	5.90614587481778	6.0274828067517	5.88452265295734	5.91281262511217	5.90045968447165	6.2672359309862	0.143015857650913	0.641062088010039	0.898770428668406
Merged-chr14-36862300-7	chr14	36861658	36862658	+	821.642883	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57377.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	2.1362382978166	2.00491039114587	2.23196115627454	2.0237616589999	2.05871741254451	1.90552536167543	-0.974204562446322	0.313392869175468	1
Merged-chr1-13427071-4	chr1	13426621	13427621	+	945.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-53038.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.33210264621667	5.44068876464993	5.38661610512717	5.7271699062194	5.55767420723803	5.77686714914343	0.562873827531028	0.0850237706099165	0.386129323574646
Merged-chr2-122156192-5	chr2	122155829	122156829	+	952.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-4371.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	4.48655216855171	4.436710789643	4.95455795772655	4.36260652928434	4.30829226528674	5.0482109888963	-0.0711636756849932	0.887191382829335	0.973836995667151
Merged-chr15-58134588-3	chr15	58134101	58135101	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027435, intron 1 of 27)	CpG	481.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	8.25802325438673	8.81722131505185	8.12998324585727	8.07564086732001	8.54000358411268	8.2063515126846	-0.210804368637363	0.449114336711617	0.807594795348397
Merged-chr2-84528943-4	chr2	84528457	84529457	+	700.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22084.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.52868319290529	6.11559162937563	6.30528014068606	6.43609473496057	6.37658362754458	6.26429118022234	0.0579373478750937	0.841090160128062	0.962832831784718
Merged-chr12-110933035-4	chr12	110932528	110933528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081057, exon 10 of 21)	exon (NM_001081057, exon 10 of 21)	43764.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	7.07078515049379	6.84546676547087	6.81917531484044	6.86799074413612	7.11862294529018	6.89259784499643	0.0773548316983045	0.7633725616546	0.941793063578371
Merged-chr7-129575954-4	chr7	129575426	129576426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15937.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	7.14456778291593	7.56913476769879	7.05455820438797	7.05127054215789	7.30963319116551	7.01655152667258	-0.217480063953997	0.427005366503966	0.7939695894886
Merged-chr8-46885581-2	chr8	46885081	46886081	+	575.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-101306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.09780831911377	5.95182989261865	6.29662778579552	6.16460833360866	6.13919835625206	6.19913192781984	0.0899201136651195	0.756525363163187	0.939629132869937
Merged-chr12-3691161-5	chr12	3690705	3691705	+	966.6333619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 9 of 17)	RLTR10D2|LTR|ERVK	-115775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.74088562178779	5.17194073679968	4.62091027509985	4.82972011924834	5.24112678239072	5.36152232507636	0.599046390581567	0.166397773217701	0.541648772157832
Merged-chr9-113741380-4	chr9	113740887	113741887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286599)	promoter-TSS (NM_001286599)	-86.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	8.87249297519956	9.03204178759565	8.78609947974667	8.83036433261409	8.98742793453817	8.80967766193381	-0.0314508331158434	0.877731960747344	0.971717948241951
Merged-chr12-33156982-4	chr12	33156485	33157485	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028139, intron 2 of 3)	MIRb|SINE|MIR	9299.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.003093727063	6.08495985454735	6.17874034933442	6.4467403646773	6.41609649117389	6.55483468866958	0.638321881125013	0.0201895760687075	0.162532337995841
Merged-chr8-36247177-4	chr8	36246686	36247686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	2330.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	6.89374902368245	6.83007523260862	6.76174968314817	6.70133394232053	6.84107550962458	6.22029681619373	-0.315475533164092	0.277126023360492	0.674361061934253
Merged-chr2-127086387-4	chr2	127085867	127086867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026678, intron 4 of 7)	B2_Mm2|SINE|B2	15710.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	6.29121539564581	5.99000576762683	6.50857191028055	6.57289516774875	6.73876551384517	6.24422721548417	0.446659996354993	0.150578595499682	0.517489620222838
Merged-chr16-91545775-4	chr16	91545347	91546347	+	933.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1247.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	6.24343623301989	6.09576526215658	6.25155945562737	6.79997311094839	6.89345421194983	6.72451597787923	0.994918265187122	0.00016217588313773	0.00423114547113756
Merged-chr8-46627542-3	chr8	46627029	46628029	+	795.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10238.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	4.30000520961986	4.17428941151546	4.36618279703845	4.18968367445524	4.23990527140404	4.59124220457535	0.170327432389174	0.715138459751551	0.926295780806461
Merged-chr9-118747125-2	chr9	118746625	118747625	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	B3A|SINE|B2	35433.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.78761832526629	4.7705985050541	4.77520189934835	4.35637714363309	4.17809445871216	4.29987075265923	-1.266099935312	0.00316650720766487	0.0439058043218428
Merged-chr12-79298367-2	chr12	79297867	79298867	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	1016.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	5.58266094247897	5.6333816611747	5.0232147849731	5.62632326869179	5.54379327734639	4.92458162897307	-0.0769911465751408	0.854743401580111	0.965987623019113
Merged-chr12-79138120-4	chr12	79137618	79138618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009705, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	7330.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	6.59254636100836	6.59561750877103	6.63704335023538	5.803851923686	5.87205088001916	5.748902861251	-1.33120313572498	2.26808464999579e-06	0.000111802599263536
Merged-chr4-34645158-2	chr4	34644658	34645658	+	793.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	30201.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	3.17765396350237	3.21427946243402	3.43742129413191	3.29753972336786	3.03813349341814	3.55780912772516	0.122676137923718	0.85181311568069	0.96531854415899
Merged-chr5-21328752-3	chr5	21328256	21329256	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-43917.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.59567133403968	3.67448958314108	3.69371604921517	4.12374273509222	4.07655917415443	3.87234943181458	1.21603891790675	0.0203926248009259	0.163502555833055
Merged-chr1-36547323-4	chr1	36546820	36547820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-68.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	4.96160136182909	4.79668996937933	5.04957074886023	4.49232213032083	4.581771107928	5.01576137145787	-0.524643514273804	0.213891355713375	0.607028613738479
Merged-chr13-60624549-3	chr13	60624144	60625144	+	805.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	22433.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.10283639096556	4.27623364288768	4.89665424889418	3.89746174030997	3.83519477326721	4.28408660537403	-1.22160657329357	0.0263655964035492	0.192813196128188
Merged-chr6-142754935-2	chr6	142754435	142755435	+	839.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1751.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	2.72341867046021	2.7675862295458	2.99938835029779	3.05472662743029	3.24642286630145	3.35081551919914	1.88717877786392	0.0086611677737628	0.0911798293411837
Merged-chr11-116102224-2	chr11	116101724	116102724	+	928.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger16a|DNA|TcMar-Tigger	8011.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	6.40409845147508	6.5295638570108	6.53465241969995	6.38606727265238	6.68122150861887	6.69156657362764	0.168930032839651	0.532876734345608	0.852011692079098
Merged-chr13-45086389-2	chr13	45085889	45086889	+	860.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-84293.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	2.3846264350038	2.38050922931424	2.19497746744317	2.49896948547335	2.30679557520019	2.60126161984299	0.911905994396165	0.294567805673066	1
Merged-chr6-87672820-2	chr6	87672320	87673320	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-652.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	5.40935224793525	5.24640112356534	5.1837400545654	5.33294672107778	4.97242406507215	5.18099484583837	-0.250888282683082	0.492074677944731	0.830914351658465
Merged-chr5-135472616-4	chr5	135472115	135473115	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	72507.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	8.15388233226139	8.17614855571913	7.68098440365023	7.6590623083151	7.98470027315604	7.73749690191726	-0.320121847824246	0.207408992895973	0.598179871785661
Merged-chr8-71609495-2	chr8	71609049	71610049	+	927.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-1475.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	5.21224899027539	5.01693299310868	4.8509114761083	4.39058176300241	4.19434979368625	4.21214607795484	-1.88495426395951	1.5966505165723e-05	0.000600063668396333
Merged-chr3-32508977-8	chr3	32508492	32509492	+	961.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1558.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	3.71485634123976	3.54513328694021	3.6066400775487	3.6149008700903	3.87426487444289	3.97660344872471	0.673446465417845	0.22198922814564	0.61686303288709
Merged-chr10-20828513-4	chr10	20828018	20829018	+	775.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-103440.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.35461940382399	3.24035892010415	3.298855421239	3.43899058163996	3.0667398824602	3.53250229713579	0.220020937390482	0.731665307748919	0.931505530045321
Merged-chr1-135430521-4	chr1	135430012	135431012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153774)	promoter-TSS (NM_153774)	-13.0	NM_001357578	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	6.01225762591217	6.09253608636871	6.07453267594962	6.225647664666	5.97049384486259	5.90047443401769	-0.0288850876223249	0.922218869005713	0.982542868764899
Merged-chr7-4792862-4	chr7	4792335	4793335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-130.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	7.6190775910609	7.86184928009117	7.64288403181016	7.52466330053245	7.71259645410935	7.82024896842319	-0.038618923437851	0.868340474958865	0.969642939011354
Merged-chr19-29460700-2	chr19	29460200	29461200	+	612.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	49781.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	5.2828838280028	4.88750691749593	5.05387215454074	5.15425163304943	4.97445441547437	4.59715112349157	-0.316237862956379	0.447079221495587	0.806270036091875
Merged-chr16-21412804-4	chr16	21412309	21413309	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10309.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	4.62145692752415	4.5670201926898	4.67653770069962	4.68217980250238	4.89692674522119	4.92767615815946	0.512458894171057	0.20171453213117	0.591244990473805
Merged-chr11-109375595-2	chr11	109375095	109376095	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-11941.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	3.94175826753021	3.59424424870823	3.72380097260985	4.09491739656139	3.92595145163492	4.00009463362662	0.756340531259465	0.154152772113157	0.523296217041698
Merged-chr2-75776745-3	chr2	75776242	75777242	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55435.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	6.5621919795468	6.46144187904813	6.20826871531198	6.8320401732825	6.94416965505896	6.95567462178974	0.757969453716663	0.00455690892379917	0.0573459282715489
Merged-chr7-109986390-4	chr7	109985855	109986855	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-125.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	7.63898727147194	7.98724696417088	7.4014363170516	7.53238896085994	8.01516616856761	7.41354371961257	-0.0218143090693807	0.93992300119816	0.986753310597155
Merged-chr1-184852459-4	chr1	184851985	184852985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6638.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	6.19923298649521	6.23368272171075	6.11963380402553	6.22497216617418	6.14635802173957	6.24323163407262	0.021534996360565	0.938107744156785	0.986279050538232
Merged-chr11-120948487-4	chr11	120948012	120949012	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	28.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	5.398562920941	5.43293796514736	5.6329276791907	5.54719262976839	5.35526818436103	5.44518023253376	-0.0681349922603915	0.838565945761886	0.962538562826178
Merged-chr8-80314130-4	chr8	80313668	80314668	+	926.025024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179877.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	5.05453145872036	4.97687639811834	5.30999864386947	4.7879326469845	4.86126742197198	4.80652687185278	-0.631349666925994	0.101290927636235	0.424466937286253
Merged-chr2-112367474-3	chr2	112366940	112367940	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026519, exon 2 of 5)	exon (NM_026519, exon 2 of 5)	587.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	6.2888517843461	6.36175972411086	6.48818402194845	6.36206753807285	6.35908848132872	6.44130114987232	0.0144313791526622	0.957240564628827	0.989925627980654
Merged-chr14-26970607-4	chr14	26970111	26971111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145221)	promoter-TSS (NM_145221)	-60.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	7.52026071074804	7.27177301111469	7.06333344488691	7.49662539624429	7.30187700872388	7.08043451414376	0.00447373663235949	0.986535437076176	0.997063455776714
Merged-chr10-120227051-4	chr10	120226563	120227563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025431)	promoter-TSS (NM_025431)	3.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	7.07708007189542	7.33774610350577	7.18038070137194	7.09360295610149	7.25699262526492	6.80737676888701	-0.191056162028623	0.465213092020368	0.816844646665488
Merged-chr5-3197305-2	chr5	3196805	3197805	+	941.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-146588.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.15887213528965	3.14375669178987	3.00489834041153	2.72415263284986	2.88501174850012	2.82905136663041	-1.41981568981607	0.0489272068559613	0.281000485095999
Merged-chr4-53112470-5	chr4	53111949	53112949	+	862.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47446.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.26308703827603	5.09667928627077	5.45379757910566	5.40607319988408	5.38121233859208	5.37032793141595	0.234378855057239	0.500749277835417	0.835242909787083
Merged-chr17-57100578-4	chr17	57100065	57101065	+	726.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033508, intron 3 of 3)	ID_B1|SINE|B4	-4820.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	2.79995261318225	2.60639051937061	2.58017941466998	2.68599302126053	2.5876918850376	2.77950755129175	0.0747250582825571	0.921688841278438	1
Merged-chr6-48698201-2	chr6	48697701	48698701	+	585.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	10043.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	2.11100923507154	2.25278397016097	2.23960237316344	2.48407873198945	2.31039251575419	2.81566016002522	2.31679086048583	0.0134357425108855	1
Merged-chr8-116238847-4	chr8	116238337	116239337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-266178.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	3.39818296519023	3.56029258560745	3.4643861736996	3.25795538616501	3.55450746865486	3.53492377248691	-0.0715076200105561	0.904616108282716	0.978142219404953
Merged-chr4-116464331-4	chr4	116463819	116464819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-138.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	5.02449439711454	4.61168966805366	5.10088526216626	4.99430730378717	4.51642561789769	4.85691177768421	-0.278581242573975	0.52124294178061	0.84693755135567
Merged-chr10-29328036-2	chr10	29327536	29328536	+	622.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110195, intron 3 of 5)	MIRb|SINE|MIR	14536.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	2.62072532003958	2.73944042765665	2.92811320040189	2.63877688188586	2.68361180636306	2.76710011594551	-0.364608840607938	0.624831114432086	0.892226791537215
Merged-chr2-72351533-4	chr2	72351057	72352057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	65856.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	3.24050040604741	3.53603340314461	3.46202983742266	3.46435579901147	3.57104103988688	3.47802756681848	0.330101294517241	0.578229760957503	0.87240568986712
Merged-chr4-145253329-2	chr4	145252829	145253829	+	876.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6459.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	3.47278083665114	3.43762211803288	3.63918288309427	3.3211346949403	3.55382046049741	3.50046076910117	-0.180874496487659	0.757515363541167	0.939883186830738
Merged-chr4-34429845-5	chr4	34429321	34430321	+	909.4266359999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-120794.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	3.79442114088567	3.95713796898737	3.69560974548842	3.47249772638294	3.59388512536037	3.6594336771607	-0.849180867903266	0.125394529229881	0.473876111606682
Merged-chr15-58750208-4	chr15	58749710	58750710	+	957.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	73217.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	4.25031176740755	3.62184619530941	3.949094888473	4.32087722516161	3.83269993956863	3.86324164485853	0.167302544501443	0.771696514914291	0.943614978016208
Merged-chr11-117955852-3	chr11	117955363	117956363	+	879.900024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13503.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	2.94231649373066	3.02209504265447	2.94865759208828	2.94709120043947	2.63685773276412	2.83726568042603	-0.812869718912806	0.26293953142564	0.660967116729545
Merged-chr15-66662175-4	chr15	66661682	66662682	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8588.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.06100168859332	3.89115686708753	4.22509452056463	4.08970779393162	4.09946459296102	4.24872559068014	0.246652798833254	0.612802448518215	0.886962349908489
Merged-chr14-51052468-1	chr14	51051968	51052968	+	721.0	f0_balb.idr	Intergenic	Intergenic	-2305.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	4.96121185092986	5.05619313310125	5.25227141036949	4.52338245319471	4.61191680104759	4.48408242310945	-1.23426177909276	0.0024215542708038	0.0358081904682856
Merged-chr15-38288135-2	chr15	38287635	38288635	+	815.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	11765.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.09979346728205	4.10186029542633	5.03610291409595	4.39403138623914	4.23567794858464	4.75394881616967	-0.0320429053602008	0.954246521435847	0.989495550016789
Merged-chr7-27193955-2	chr7	27193455	27194455	+	899.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285825, intron 2 of 6)	intron (NM_001285825, intron 2 of 6)	1805.0	NM_001046637	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	2.72367376183203	3.02947163281583	3.03886218740797	2.93229213285327	2.53953713890401	3.27414207252227	0.0688692594314053	0.93271578042231	0.985289660163416
Merged-chr16-20085433-3	chr16	20084931	20085931	+	654.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12123.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	4.33676513468802	4.42304990029137	4.43018167275406	4.40691085429271	4.39243603802166	4.45464088777225	0.0519328235198075	0.904480721117455	0.978131323042371
Merged-chr2-148597172-3	chr2	148596675	148597675	+	635.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-75440.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	2.45861495074771	2.74808541863753	2.68252984471273	2.2975340035448	2.68181064107823	2.56895883025015	-0.603932138404958	0.487114988509472	1
Merged-chr6-134189956-4	chr6	134189451	134190451	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	154251.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.60450109289705	4.1645213490523	4.3082734068985	3.78040984250951	3.76091681740405	4.33316153280571	-1.12434678750831	0.037645687715483	0.239857929457326
Merged-chr2-169781986-1	chr2	169781486	169782486	+	726.0	f0_c57.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	148340.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	2.88567542499862	2.93983524001852	3.0879315796256	3.99438103174008	3.75186229781236	3.69855880366678	4.09349722344585	5.2339988610525e-07	3.05193116489458e-05
Merged-chr5-8894824-4	chr5	8894330	8895330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1109.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	5.14875094985265	4.92096144556971	4.69856083190184	5.33985365828226	5.61311362128793	5.01715354910359	0.846210461387779	0.0381024729190032	0.241593428838255
Merged-chr8-125729956-4	chr8	125729446	125730446	+	967.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4257.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.62574379302742	5.59155662097898	5.87147221375898	5.87973515486655	5.76429356117603	6.08398967853312	0.388616919926091	0.222248075713637	0.617181260654215
Merged-chr17-83730725-4	chr17	83730277	83731277	+	981.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	Lx8|LINE|L1	24614.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.4547761635669	6.18518614014265	6.51486821280008	6.22657547411785	6.27857296674097	6.30092854322305	-0.194843045850026	0.488711487142406	0.829423271678195
Merged-chr6-129397463-5	chr6	129397018	129398018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001204239, exon 1 of 5)	5' UTR (NM_001204239, exon 1 of 5)	221.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	8.53879706698904	8.31225348439601	8.229516984285	8.48976392729944	8.7954218207022	8.16939348646252	0.206515200232256	0.412760601524371	0.784588360697731
Merged-chr13-113590974-3	chr13	113590466	113591466	+	940.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27598.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	8.40796852108381	8.30327720274954	7.97884609572204	8.05498610810474	8.38716256735157	7.9314796041271	-0.142534620617164	0.568315403121074	0.868549528189122
Merged-chr5-67847521-4	chr5	67847007	67848007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009727)	promoter-TSS (NM_009727)	-76.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	7.26975588330978	6.98037836552941	6.94363864045188	7.22237527444197	7.17206828846785	7.08393395097329	0.127212262591179	0.609884089250806	0.885331420927875
Merged-chr3-57739442-2	chr3	57738926	57739926	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	B2_Mm1t|SINE|B2	3369.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	3.82593277149199	3.84961803368881	4.11845905216931	3.84420682539523	3.7394274528951	3.95886360348519	-0.268177945557365	0.606800828965397	0.884334764702363
Merged-chr1-135282733-4	chr1	135282225	135283225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1359.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	7.38017643265133	7.38387053363	7.10832898047459	7.39683947828113	7.58908333358989	7.40444868625139	0.245031931289015	0.306573484214623	0.702795450713016
Merged-chr19-44401890-3	chr19	44401386	44402386	+	980.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009127, exon 4 of 6)	exon (NM_009127, exon 4 of 6)	5823.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	2.84748666975263	2.73933018841807	2.8988058397979	2.6566874711696	2.48471181025646	2.53403603081916	-1.54050225134423	0.0498134836112604	1
Merged-chr11-106428255-4	chr11	106427745	106428745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 5 of 21)	intron (NM_023913, intron 5 of 21)	-45464.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	6.51216797823039	6.47825876401723	6.35513099322823	6.49930311151086	6.51715538186684	6.64491461060981	0.154089996193723	0.558842133317088	0.864883618129129
Merged-chr2-166793761-4	chr2	166793266	166794266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023815)	promoter-TSS (NM_023815)	-1.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	6.10523004481809	6.14478801876321	6.08574074748924	6.06153993186166	5.82893884153132	5.91552524594806	-0.307418578740275	0.291897126572732	0.689235268138963
Merged-chr18-90578963-2	chr18	90578463	90579463	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-862.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	3.83039069657806	3.71217207278021	3.838307711883	3.99349058992383	3.73711549059869	3.80582600826707	0.1790270654428	0.73307398135133	0.931987040906377
Merged-chr7-55909753-4	chr7	55909283	55910283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	MLT1C|LTR|ERVL-MaLR	52710.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	6.74246861459385	6.49773623631135	6.82054952160047	6.90700187206288	7.08846477512648	6.87898156678994	0.434229291079639	0.0961846913981231	0.413438154863882
Merged-chr1-86064746-4	chr1	86064244	86065244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027357, exon 1 of 25)	5' UTR (NM_027357, exon 1 of 25)	125.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	7.52208737265676	7.85220252785111	7.51348802274921	7.30907274572457	7.59358988404271	7.2371164634163	-0.359250098792297	0.157300744129829	0.528495229716136
Merged-chr8-83147732-1	chr8	83147232	83148232	+	632.0	f1_balb.idr	Intergenic	L1_Mus2|LINE|L1	-17620.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.72423909574553	4.36432554484846	4.77351121728744	4.25042399870106	4.03323352381186	4.6581257792343	-0.759490671445499	0.121046585428858	0.465264425367907
Merged-chr13-85508001-4	chr13	85507514	85508514	+	979.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218528.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.33316005095815	5.16950408900564	5.08940668605673	4.86619666977806	4.79151491183642	5.42762678276227	-0.331758089761506	0.414658917409599	0.785947360904528
Merged-chr1-54762734-3	chr1	54762283	54763283	+	606.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 7 of 27)	intron (NM_001081433, intron 7 of 27)	163604.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.29810228551363	4.29637749455184	4.36842398947963	4.41785888332209	4.54415724070474	4.34703518902241	0.331220435604616	0.451311972607941	0.808957790071745
Merged-chr13-19855088-4	chr13	19854562	19855562	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30805.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	4.45160332339353	4.44643250515429	4.13235697073819	3.94555325842314	3.65283745803773	3.9514611940914	-1.50896977117526	0.00326726046218671	0.0449033248912393
Merged-chr14-52020700-4	chr14	52020201	52021201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	32.0	NM_001253696	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	7.74073169363829	7.87783860433853	7.58678250748667	7.79556791910835	8.04802462644845	7.83289551570641	0.22247016563821	0.33424546194248	0.724872195509535
Merged-chr18-68163057-3	chr18	68162533	68163533	+	789.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-64913.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.98319263763259	3.79589259131477	4.20700915885172	3.49060182124085	3.23145730306866	3.32240593717708	-2.37282223437749	0.000141955688339918	0.00379558127101153
Merged-chr6-125349523-6	chr6	125348928	125349928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011609)	promoter-TSS (NM_011609)	-295.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	6.85215372019617	6.75374458260987	6.75031816086208	7.13526204105724	7.30651749062209	6.95937337158347	0.554393103467163	0.0277576621320367	0.198830801268517
Merged-chr14-31395755-2	chr14	31395255	31396255	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	21922.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.19802711962465	5.09024460996051	5.42081989221583	5.34331746759136	5.14173943788142	5.71526545693129	0.344577997145522	0.36271460322675	0.748215076668845
Merged-chr16-57391574-4	chr16	57391078	57392078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	LSU-rRNA_Hsa|rRNA|rRNA	38301.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.0982957780211	4.92618898027217	5.30165617150246	5.08313382580921	4.51606926829381	5.95031593242342	0.444411506978834	0.579663358523346	0.872572319921262
Merged-chr4-88693634-4	chr4	88693137	88694137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2369.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	4.18104983940893	3.91344361440723	3.88294449982045	4.0683752802041	4.03262523191185	4.05338949077424	0.13366233466023	0.788708817275285	0.94895503373255
Merged-chr11-113450259-3	chr11	113449754	113450754	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027216, intron 5 of 9)	MTD|LTR|ERVL-MaLR	115561.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	3.70548027136664	3.74373816859024	4.07756133484865	3.29060012455724	3.04068134397521	3.69133730756834	-1.78369861093724	0.00843191098437754	0.0893761081768263
Merged-chr6-72023383-2	chr6	72022883	72023883	+	635.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	B4|SINE|B4	19145.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.15918025952866	2.98011323753957	3.0626668350686	3.53315431065823	3.29361289239759	3.53596535114617	1.60543560141274	0.0137593973510783	0.125316542774575
Merged-chr15-101244850-1	chr15	101244350	101245350	+	947.0	f1_balb.idr	Intergenic	Intergenic	-19664.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	7.2861777486324	7.23531727936287	7.61982550825966	7.42866573922414	7.6891879750624	7.35819052506462	0.180275034560079	0.477752252116853	0.823367525497911
Merged-chr1-181922246-4	chr1	181921763	181922763	+	973.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79862.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	3.71480862576929	4.08882453954101	4.13693382900809	4.15985205021472	3.8354258448407	3.91952709252893	-0.0360765387595426	0.945860579481848	0.98796006280508
Merged-chr7-88259859-4	chr7	88259360	88260360	+	863.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-18225.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	5.43625081119818	5.32230720658903	4.98761001364886	5.4319172477135	5.77304283863002	5.33597771744964	0.524212215370473	0.162803368614568	0.536188662408322
Merged-chr2-173337815-4	chr2	173337314	173338314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61281.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	3.18664241406086	3.04725121874243	3.1746356773987	2.92929512144575	2.98541912107959	3.24563107771882	-0.364273718922329	0.585256306010406	0.874932131880008
Merged-chr6-72120100-4	chr6	72119610	72120610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045163)	TTS (NR_045163)	2830.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	6.5304708121667	6.31895374314507	6.12849385446213	6.36570371081659	6.59871416192183	6.23272861639816	0.120943206488691	0.682768464659939	0.915212496624716
Merged-chr5-143623984-3	chr5	143623535	143624535	+	782.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	1588.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	5.34030312603942	5.3490934119919	5.28446365085248	5.0120852471394	5.27266849595525	5.46603140880653	-0.139860670139967	0.696354347590979	0.919442007192133
Merged-chr9-90267031-2	chr9	90266531	90267531	+	621.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	3738.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.63210558141771	6.0359453780629	6.03685376923402	6.3784732900698	6.36780556551411	6.20589940759146	0.702105617026672	0.0211235598805022	0.167435989919817
Merged-chr11-80138826-2	chr11	80138326	80139326	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183275, intron 2 of 3)	RSINE1|SINE|B4	3327.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	4.2125465230696	4.0290707847006	4.06619699193126	3.89320511211117	4.1284088506622	4.08714575009226	-0.185341350869931	0.705502970936008	0.922807734235284
Merged-chr3-27281268-6	chr3	27280805	27281805	+	664.722229	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35772.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.99935720547038	4.80522122761452	4.75798765677501	4.73053566574414	4.83435284733615	5.04125864586638	0.00985626257598951	0.980149798520384	0.995483481682754
Merged-chr18-80197274-2	chr18	80196774	80197774	+	555.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_199197, exon 3 of 6)	exon (NM_199197, exon 3 of 6)	3345.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	5.13084823390833	5.43674234216821	5.68512133199665	5.10754559758726	5.39450195299923	5.51507997432427	-0.157684446735154	0.674845372722519	0.911865018776908
Merged-chr11-101562635-4	chr11	101562130	101563130	+	992.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008676, intron 7 of 23)	B2_Mm2|SINE|B2	9976.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	3.82518723181926	4.1195343345059	4.02875739160759	3.69106659571822	3.91267017872138	3.74638236317994	-0.631983271701628	0.233698721342582	0.629973286640303
Merged-chr2-153121943-6	chr2	153121442	153122442	+	898.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	13474.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.0736304090753	6.45235437083842	6.25931653346645	6.05098197521279	6.44595520209799	6.37730036224183	0.0529077842459892	0.86142467963148	0.967819025542415
Merged-chr6-71223491-4	chr6	71222985	71223985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160127, intron 6 of 9)	MLT1B|LTR|ERVL-MaLR	23606.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	4.68346971654455	4.52026103668533	4.52096226332131	4.7734843619056	4.57283016315322	4.21002175739778	-0.0749446848690064	0.868702758649422	0.969708434868159
Merged-chr18-69343732-2	chr18	69343232	69344232	+	679.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-760.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.03082842723074	5.08936761480439	4.70509129653999	5.14701218604969	5.04864460841235	4.85618336208394	0.137249467699275	0.727197365400024	0.930115108449853
Merged-chr13-52034443-6	chr13	52033945	52034945	+	742.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62296.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.65661511616029	5.92136431573007	6.07208583558498	6.5042396377534	6.45584574380106	6.21872962353005	0.880014423887197	0.00349270276924876	0.0470946057403421
Merged-chr6-72148271-2	chr6	72147771	72148771	+	750.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 5 of 6)	RSINE1|SINE|B4	-25074.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	3.50739718004369	3.15673136013707	3.6410485800197	3.47543471465206	3.12940329095118	3.61120079838121	-0.114357254515761	0.86154225566743	0.967861544964734
Merged-chr7-102245339-4	chr7	102244809	102245809	+	868.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4809.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.20150421786799	5.22770554469461	6.14252265993127	5.77725210053109	5.69794804743249	6.42482428005565	0.699390371945272	0.304301026845294	0.70084663420418
Merged-chr19-6919860-2	chr19	6919360	6920360	+	812.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_007953, intron 2 of 6)	ID_B1|SINE|B4	1948.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	2.62651994078416	2.7483898141866	2.94146396930444	2.74130038742909	2.54771726820274	2.83962467356903	-0.336859549484386	0.65713063970673	0.904749338441592
Merged-chr2-165321698-4	chr2	165321207	165322207	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-881.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	7.50683773183796	7.15311362449679	7.46297886841085	7.74464792898686	7.86834586683893	7.45727927047081	0.477489092641908	0.0591147570447768	0.314784378867387
Merged-chr5-136567327-4	chr5	136566853	136567853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_009986, exon 1 of 24)	5' UTR (NM_009986, exon 1 of 24)	137.0	NM_001291234	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	5.88363004099387	6.13026717370702	5.67680806345236	6.20260309201601	5.7536488686945	5.62334913558874	-0.0526211687790842	0.879624229923731	0.97219374767077
Merged-chr11-50285419-4	chr11	50284915	50285915	+	977.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	RLTR20B2|LTR|ERVK	6921.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	6.11649107766239	6.12471574286888	6.26032360455549	6.14402126821098	6.30929636217938	6.17764280089631	0.0913345803368512	0.74518485542834	0.936052500862041
Merged-chr8-124722077-4	chr8	124721589	124722589	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026855)	promoter-TSS (NM_026855)	-50.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	5.17264817708949	5.61700456226382	5.27883137919136	5.32061194529967	5.45840201931342	5.52344580987894	0.109825042893953	0.7592020039849	0.940311236380535
Merged-chr7-6282977-4	chr7	6282463	6283463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3617.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	7.21243134178416	7.28224014853725	6.97287119525794	7.49750447917636	7.60183675817741	7.2911602516345	0.453264458117832	0.0666455445824364	0.337334538208855
Merged-chr15-59811748-4	chr15	59811243	59812243	+	966.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16784.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.38976093193986	4.79999724245322	6.00153176820576	5.6755715821993	5.23475714158858	5.61027343986146	0.0597923436116334	0.895950478297926	0.97569173539301
Merged-chr9-41135819-2	chr9	41135319	41136319	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	22243.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.0423731682647	4.96839201890581	4.69171462497301	4.56631318382472	4.02590593313962	4.4606184480095	-1.33870739169334	0.00377981404626349	0.0498748441423236
Merged-chr2-12053894-4	chr2	12053376	12054376	+	918.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-247370.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	5.60624312808203	5.56206665678299	5.70396580118308	6.09471783927121	5.71297271752126	6.25102479991028	0.726247937111839	0.0279436703043442	0.199685410398821
Merged-chr17-31020271-2	chr17	31019771	31020771	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37423.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	6.46882917642029	6.44016522328454	6.27568530692719	5.96430500374502	6.07217130177615	5.85494226297283	-0.718818249766677	0.0121732177065058	0.115374247402255
Merged-chr6-86473359-2	chr6	86472859	86473859	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131126, intron 1 of 2)	intron (NR_131126, intron 1 of 2)	7471.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	6.34668607184705	6.22068543852866	6.09944096146241	6.4029089949387	5.98438611916123	6.13812978590538	-0.0798701718091009	0.789841618368034	0.949311112850285
Merged-chr2-128719054-2	chr2	128718554	128719554	+	789.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20139.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	7.04613627915024	7.11867628561742	7.26728288731485	7.09565665183362	7.50191846805823	7.04016670655372	0.146797066019978	0.577845176988857	0.87219514592351
Merged-chr13-52598597-2	chr13	52598097	52599097	+	643.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	1715.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.36814513517063	5.40659875636996	5.37680902943673	5.28927288005346	5.01823312519261	5.28653800020914	-0.38155011049649	0.275947360877021	0.673355880502019
Merged-chr2-129480871-2	chr2	129480371	129481371	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	MTB|LTR|ERVL-MaLR	55731.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	2.94826073787049	3.22342219511561	3.04529031890318	3.07000695052853	3.29761665388876	3.34693741939237	0.688806003680637	0.301771226781406	0.698483413670122
Merged-chr10-77543352-4	chr10	77542859	77543859	+	935.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008404, intron 3 of 15)	MTE2b|LTR|ERVL-MaLR	13011.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	5.06371681990168	4.52853469961956	4.87926907517062	5.00568575439421	4.89023194644939	4.87024487547585	0.18018010045526	0.663295378677253	0.9071429113423
Merged-chr11-97433316-3	chr11	97432817	97433817	+	894.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16843.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.82689084051558	4.25518096273657	4.43155668127828	4.06678473223019	4.07376290381039	4.4139950963444	-0.905036945992012	0.0669804986904568	0.338268592803807
Merged-chr8-33653471-4	chr8	33652983	33653983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010344, exon 1 of 13)	5' UTR (NM_010344, exon 1 of 13)	245.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	6.81470689975475	6.97150121500333	6.9927696733498	7.87609133543579	7.96847139923567	7.8413582802799	1.43325584634935	3.17877817619223e-10	3.80028411615809e-08
Merged-chr8-46083908-2	chr8	46083408	46084408	+	593.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_207213, intron 4 of 17)	intron (NM_207213, intron 4 of 17)	40238.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	3.22596030187708	3.22088721328775	3.30199257515882	3.33501676495948	2.88329972303546	3.14373795397959	-0.496067763593343	0.461643877943857	0.815107818354545
Merged-chr2-31082875-4	chr2	31082393	31083393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	13607.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.20538766207247	5.99632542721628	5.73419842002245	5.7308339301044	5.67228096895522	5.62866965076944	-0.578253459451826	0.0702135659273997	0.34711724756028
Merged-chr17-31559082-4	chr17	31558584	31559584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-5689.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	5.81102330243704	5.7930782957088	6.26067648211251	5.84496128371441	5.86615189681169	6.04113991428937	-0.0786352682802549	0.806776714963777	0.954366489338713
Merged-chr1-75316798-4	chr1	75316165	75317165	+	826.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110831, intron 2 of 14)	intron (NM_001110831, intron 2 of 14)	352.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	4.91290424727479	4.82905786465281	4.89897114494662	5.14117163160596	5.17796894391702	4.84925609111234	0.422614582243255	0.267000149941321	0.664516381431973
Merged-chr10-60301467-2	chr10	60300967	60301967	+	917.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 14 of 14)	intron (NM_011179, intron 14 of 14)	17006.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	2.77232403419727	2.91297740633641	3.2998374883067	3.06921039021619	2.82613042335782	3.37011331298732	0.408047505473886	0.584982691036682	0.87477799647552
Merged-chr19-8982873-4	chr19	8982438	8983438	+	953.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6346.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	4.98298695320097	4.57165098893112	4.66197358421776	4.38971366691309	4.29644380341911	4.94400254382006	-0.449707872811966	0.34071072965573	0.730402905992528
Merged-chr7-30728884-2	chr7	30728384	30729384	+	929.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290631)	TTS (NM_001290631)	650.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	5.72759446530567	5.90369371437975	5.86780725275362	5.99828017261928	5.90443675239051	5.66688943243953	0.0673514073079182	0.828220075689553	0.959644980564395
Merged-chr15-99253058-2	chr15	99252558	99253558	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045627, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-1097.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	4.76770171631633	4.80924682808252	5.53781025271114	5.10232044975031	5.18074708541742	5.69476978990157	0.54038775120006	0.227778190283263	0.622912839439754
Merged-chr11-100712043-2	chr11	100711543	100712543	+	570.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038010, intron 1 of 17)	intron (NM_001038010, intron 1 of 17)	424.0	NM_001038010	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	4.30105753587079	4.08467472348215	4.84342728236482	4.54464542312963	4.10994557621993	3.7719880068216	-0.764896958983828	0.43012934989248	0.796105989515053
Merged-chr2-148874685-3	chr2	148874210	148875210	+	850.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	802.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	5.05013459821	5.21883084050117	5.62318704539822	5.50850954366346	5.39218106842001	5.31980912883617	0.20738032106882	0.574514522646458	0.870773088875341
Merged-chr10-80824411-3	chr10	80823924	80824924	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2232.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	6.9858204673706	7.3286786629491	7.45573107183526	7.51544540382798	7.81849738759482	7.41933857467965	0.493896805375914	0.0618385011353673	0.322842138440936
Merged-chr1-9906013-3	chr1	9905509	9906509	+	722.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2629.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	3.07056581932059	2.98796894973603	3.11154567651336	2.81597591328045	2.87282588212052	3.2373671557319	-0.340772769519995	0.626437412173984	0.892916235446326
Merged-chr2-116989502-4	chr2	116989007	116990007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	89355.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	7.2446218802506	6.90628970248163	7.26275250603284	7.03792163484884	7.18309583426088	6.98431409913138	-0.101344437293698	0.691959030160623	0.918541547639936
Merged-chr1-151585842-4	chr1	151585352	151586352	+	749.962524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	14479.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.59062686818652	6.18638260271643	5.92138778073789	6.13213410381703	6.29531470637537	6.23698645892336	-0.0841719607173674	0.791762313330736	0.949813421868226
Merged-chr7-80347474-2	chr7	80346974	80347974	+	562.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4337.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	2.69177351885115	2.80403769631024	3.02140983145494	2.62559534067766	2.77012615178113	2.74179616766868	-0.650731614537238	0.38338194734263	0.764870287349499
Merged-chr11-70562419-4	chr11	70561917	70562917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	-464.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	5.77871509153706	5.74448568635997	5.58037446277054	5.71523213024448	5.62925637028053	5.64305294905505	-0.0894219112000639	0.775281137478908	0.944594834759211
Merged-chr11-53819013-4	chr11	53818492	53819492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	40264.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	4.78568754898891	4.76239505910753	4.71742632730956	5.33176417284082	5.33591481093252	5.09206840996889	1.08689120001266	0.00365133706046894	0.0486626175544528
Merged-chr7-126583350-4	chr7	126582822	126583822	+	879.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-86.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	8.00424897000768	8.20642884256155	7.9623332052847	8.10692496323322	8.30656412619129	7.72113728744001	0.0167665873899557	0.946681184877894	0.988007649185823
Merged-chr13-21717612-4	chr13	21717142	21718142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	14.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	6.41787795959058	6.78334699722055	6.52620361108636	6.78975945804283	7.1571241592208	6.47342844404053	0.410559574701106	0.180667097468901	0.56265140611016
Merged-chr8-11103505-2	chr8	11103005	11104005	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95075.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.27930469861012	5.33119794364763	4.87368559420367	4.64384854688095	4.58897068806181	4.46378160403096	-1.37551134731519	0.000841046952091765	0.0157262550089105
Merged-chr7-84143311-4	chr7	84142798	84143798	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	8595.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.55411418137636	4.50571154079169	4.80188113966192	4.99434108569485	4.53905552558351	5.44195454526909	0.922437627648803	0.0474823798681754	0.276036740310986
Merged-chr6-86779415-4	chr6	86778926	86779926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013471, intron 1 of 12)	L1M1|LINE|L1	-4312.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	6.76182680678968	6.79842713752995	6.24305419343641	6.28702611414568	6.26944444344013	5.35718581470124	-0.969902149960834	0.144460848300149	0.507214386763159
Merged-chr8-56324375-1	chr8	56323875	56324875	+	707.0	f0_balb.idr	Intergenic	Intergenic	29823.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	4.25992214225159	4.4090234693873	4.40275234405083	4.08094408799939	4.15076587772562	4.16033390221152	-0.623595858965196	0.175297518213308	0.555104320042256
Merged-chr12-36190570-4	chr12	36190067	36191067	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	27651.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	4.15640712385038	4.27160962327984	4.44039814343263	3.92684046647259	4.13026238088988	4.16581884331094	-0.586242997174986	0.222868839336386	0.617776133760918
Merged-chr1-39526565-2	chr1	39526065	39527065	+	588.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9136.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	3.07825915323625	3.15263005142555	3.34386430556025	3.26020548787594	3.23308160080842	3.36040620432578	0.38401268197139	0.540609205522394	0.856401971110652
Merged-chr10-61366133-1	chr10	61365633	61366633	+	550.0	f1_balb.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	17390.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	2.8643159208643	2.78371328857353	2.97172282721119	2.77936980392614	2.66754354686455	3.41409492061023	0.547468992773723	0.482381825968681	0.825570196891311
Merged-chr9-71806667-4	chr9	71806198	71807198	+	738.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-35096.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	2.42615812910112	2.28751701168801	2.38214013950901	2.58482962266308	2.40408261657798	2.58596802450439	0.989893269315048	0.226432779141496	1
Merged-chr4-53160897-2	chr4	53160397	53161397	+	975.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-1002.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.9845361970879	3.72841506203951	3.92833827912818	3.71470006798447	3.55223234276013	3.94952297568839	-0.467274767529241	0.393236218202525	0.771515439837752
Merged-chr18-84678897-2	chr18	84678397	84679397	+	927.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	3162.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	2.55194871364553	2.67047703335756	2.55347021416375	2.70489637145178	2.56283674180264	2.81256770325155	0.542857500452142	0.478087005307586	1
Merged-chr1-152582985-3	chr1	152582467	152583467	+	853.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	Arthur1|DNA|hAT-Tip100	42250.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	6.84896656741671	6.7306617019895	6.61635445837738	6.53365151872352	6.9172245736698	6.80324349615154	0.0389425580799984	0.885064723331038	0.973538624783452
Merged-chr13-31559276-1	chr13	31558776	31559776	+	600.0	f0_balb.idr	exon (NM_008239, exon 1 of 1)	exon (NM_008239, exon 1 of 1)	1106.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	1.82717507747401	1.91673868161826	1.949680131115	1.57187832939394	1.56239390226465	1.60929211478539	-4.25377864337001	0.00235102791804358	1
Merged-chr6-57790206-2	chr6	57789706	57790706	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34919.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.1507287084219	6.43212806044944	6.24228537878377	6.71937950393868	6.76433592848108	6.26034451628367	0.53224528121338	0.0732496578415366	0.35561920355205
Merged-chr13-44582296-2	chr13	44581796	44582796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142569.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.48141322194735	4.62740337441008	4.64430582524381	5.11580731619952	4.79798941823112	4.79123020469103	0.756597083894843	0.0646271623521335	0.331269446497648
Merged-chr12-70970960-2	chr12	70970460	70971460	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3663.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	2.87484535036628	2.86352109822987	3.01244565485853	2.96605575338677	2.9399913167669	3.13997613414475	0.472147479349732	0.487884174422823	0.828740765241895
Merged-chr11-4594304-1	chr11	4593804	4594804	+	816.0	f0_balb.idr	intron (NM_028860, intron 1 of 17)	CpG	511.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	7.63318561252128	7.74094245183049	7.47398113132004	8.02955025006415	7.72167076232863	7.71578509939817	0.296891469415228	0.210318139655613	0.60239412634554
Merged-chr7-139249621-4	chr7	139249177	139250177	+	887.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	1195.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	5.40208428118845	5.7085781557629	5.35430639564283	5.58523539833409	5.4855977361898	5.32082065470161	-0.0635515678841011	0.854318308786313	0.965987623019113
Merged-chr17-35209538-4	chr17	35209057	35210057	+	747.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4206.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	7.39444364949415	7.19647289478443	7.16146715639464	7.398360249042	7.85914218419926	7.28077222116969	0.428662703112348	0.11224393699637	0.447545413788228
Merged-chr2-34803203-2	chr2	34802703	34803703	+	709.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur4|SINE|Alu	-3291.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	7.37040802037172	7.60251003249786	6.7192325996931	7.16013359854528	7.61989902116842	7.19499135383092	0.0814702170851212	0.7986460122608	0.952045635280249
Merged-chr9-107983794-2	chr9	107983294	107984294	+	973.75	f1_balb.idr|f1_c57bl6.idr	TTS (NM_026597)	TTS (NM_026597)	2122.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	4.90742510366218	4.77480262171765	4.99669303949395	4.82830594201024	4.93697537274388	4.92048824295796	0.0164174969422618	0.965806909562698	0.992085098648128
Merged-chr1-180255689-2	chr1	180255189	180256189	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	611.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	6.19207998547705	6.47997532858809	6.13291777059903	6.00973579796753	6.09203482166967	6.15023915015519	-0.341317015676136	0.243306842739587	0.640502592040103
Merged-chr4-47010445-1	chr4	47009945	47010945	+	767.0	f1_balb.idr	Intergenic	Intergenic	-18731.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	3.53708115111513	3.84195102686875	3.4958424516098	3.28737519019973	3.39729276658314	3.45519852599267	-0.958453978223691	0.109806473990746	0.442930826440856
Merged-chr11-4600129-4	chr11	4599626	4600626	+	967.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-5311.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.13543851059888	4.30762571705525	4.19264297522119	4.20646318891304	4.00401154707214	4.26052906123229	-0.174263341877671	0.712970852083848	0.92531822516521
Merged-chr18-9490673-4	chr18	9490185	9491185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40531.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	7.38363820856695	7.45094136136959	6.14589816316547	7.13745688029139	6.92237157614658	5.8322095014437	-0.564639469912328	0.520157343255665	0.846212919968275
Merged-chr9-121719916-3	chr9	121719409	121720409	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010918, intron 2 of 16)	CpG-15515	728.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	8.49164751975514	8.38449369670025	8.0405534002068	8.27281284939672	8.05357941585434	7.86544774748158	-0.346738903419414	0.156366003942383	0.526863837053567
Merged-chr1-16637648-3	chr1	16637161	16638161	+	813.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-18323.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	2.89937624074666	3.09469506590385	3.13854548574289	3.11554395311832	2.77821652955544	3.2651458754542	0.0759011369555204	0.915002932093355	0.980959026698783
Merged-chr6-100211867-4	chr6	100211351	100212351	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	75507.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.62038586166559	4.24500839562844	4.51017786281653	4.65524669552442	4.45596079521271	4.3104430552936	0.0477710011479011	0.916273993186956	0.981243905880233
Merged-chr12-99264537-4	chr12	99264041	99265041	+	992.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-101733.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	3.91044127674098	4.07178155679844	3.82361880912396	3.79441383928624	3.76929207376554	3.84200331006314	-0.458834209914208	0.374512089928676	0.758106266771134
Merged-chr9-95640169-4	chr9	95639754	95640754	+	990.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	2626.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	6.61507128379324	6.85418274210446	6.99476656225948	7.32680243767929	7.33138488308475	7.03947302195179	0.64135806989963	0.0137221609712111	0.125100643156846
Merged-chr9-88702344-4	chr9	88701845	88702845	+	934.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359992, intron 2 of 2)	URR1B|DNA|hAT-Charlie	17242.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	3.31989868085789	3.43357905478602	3.24049869531186	3.72576335897627	3.47015698050982	3.70490638811745	1.08949562251282	0.0699611511416198	0.346302934344326
Merged-chr9-51007095-4	chr9	51006596	51007596	+	734.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1977.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	3.94697027593206	4.05425569090727	4.20717930182883	3.93444433780679	4.13356881392673	4.18623700298379	0.060023105760716	0.902562727862131	0.97755491916092
Merged-chr7-5080155-4	chr7	5079626	5080626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252454)	promoter-TSS (NM_001252454)	-109.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	7.90836546680276	8.24475272815016	8.07039511639107	8.24889936770791	8.24932515391823	8.27169778636902	0.243173545745729	0.264913023220544	0.662780660668275
Merged-chr7-80191580-4	chr7	80191010	80192010	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	4669.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	5.40027047440339	5.43277804194558	5.42854309460926	5.46238433603764	5.27974549685634	5.65591274540057	0.0814868130538758	0.811043768771461	0.955098218346624
Merged-chr10-99179772-4	chr10	99179241	99180241	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71606.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.9895240755695	7.87113024027267	7.35767017091828	7.64315111090068	7.91703565557285	7.63725203425142	-0.0475589129444903	0.85884986635098	0.96702230262239
Merged-chr2-69664230-4	chr2	69663737	69664737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028284, intron 9 of 11)	RSINE1|SINE|B4	-5883.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	6.25282714321917	6.42786122946775	6.24563660117095	6.1533282486379	6.14543328538288	6.24480283331437	-0.23021311825704	0.40745682606598	0.781604711789613
Merged-chr10-44267861-2	chr10	44267361	44268361	+	610.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053069)	promoter-TSS (NM_053069)	-478.0	NM_001314013	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	6.08534230278161	6.45354380268854	5.65725533740357	5.81400845200818	6.16126132708276	5.9378620198891	-0.231584483187771	0.511207613359165	0.841331921585713
Merged-chr10-77971321-4	chr10	77970838	77971838	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.31882244387522	6.90000599866438	7.25279914846014	7.30760125834787	7.43502398444586	7.37668829587584	0.310043115922324	0.218396639490636	0.61254542680816
Merged-chr13-21716829-4	chr13	21716331	21717331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	419.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	7.32040209752449	7.65308615019547	7.56651805790811	7.50166042577179	7.97300412030267	7.62333388405517	0.292468952122482	0.255516706772383	0.652637143105991
Merged-chr2-164878720-4	chr2	164878253	164879253	+	989.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	-615.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	6.79212740533685	6.76166409797175	6.69707507932902	7.10223621839947	7.23891683438424	7.10169267586774	0.611202011178538	0.0116075484790971	0.111681624763612
Merged-chr4-41713945-1	chr4	41713445	41714445	+	733.0	f0_c57.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-428.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	5.16247708774771	5.17168052693077	5.17667399510047	5.18744501605708	4.8980590171053	4.96232927755234	-0.314954921806585	0.391395125160512	0.77042026812916
Merged-chr7-102244057-4	chr7	102243544	102244544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	6074.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.05458587801665	4.96747805324224	5.49735274868273	5.06913776630859	5.30880624706394	5.63492789822808	0.339115975036938	0.394928068096491	0.772579826044138
Merged-chr16-42895922-1	chr16	42895422	42896422	+	793.0	f0_balb.idr	intron (NR_040402, intron 2 of 3)	Charlie7|DNA|hAT-Charlie	-11723.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	3.67019948231714	3.70239158667294	3.72429708784473	3.77234869824484	3.5073957743828	4.02713971669596	0.258038957114436	0.647287510698327	0.901302387510186
Merged-chr10-127566672-2	chr10	127566172	127567172	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 41 of 89)	exon (NM_008512, exon 41 of 89)	-32113.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.83281270837095	2.6826285249931	3.26635547160519	2.84573257755052	2.5332834087664	3.07244613055452	-0.532143752025615	0.511284428745838	0.841331921585713
Merged-chr13-43792626-2	chr13	43792126	43793126	+	575.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	B4A|SINE|B4	7514.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	3.39921320856761	3.26209209000525	3.34707938976956	3.3919682850012	3.28654653556191	3.18499874668116	-0.173992030189474	0.776699422708368	0.944890351789015
Merged-chr10-8741187-4	chr10	8740681	8741681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 14 of 19)	intron (NM_175155, intron 14 of 19)	144889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.96002378522601	3.86400503440329	4.3364989256623	4.21031122824883	4.20581800468295	4.27682046470807	0.489010629361357	0.323405548214397	0.71668986599242
Merged-chr16-55975104-4	chr16	55974605	55975605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	-488.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	8.53633458120397	9.05337991864665	8.27805181048953	8.1921293692461	8.53950428594793	8.14353730182232	-0.502692704604573	0.0715422555863894	0.350858143464767
Merged-chr11-69688267-2	chr11	69687767	69688767	+	743.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-2713.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	3.99813503709271	3.92001693362907	4.16259828694039	3.81444480305696	3.68357682086851	3.81010375970592	-0.822492329419407	0.112020240380603	0.447037921699118
Merged-chr19-5926854-2	chr19	5926354	5927354	+	684.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-2038.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	3.10926565040958	2.84990634254619	3.19991528064319	2.69099143320246	3.0524705671716	3.0473631498465	-0.532683723309248	0.472559484050661	0.820550293768681
Merged-chr2-60904209-2	chr2	60903709	60904709	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22771.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.03647385776678	4.1422989960699	3.80225207291099	4.12665833622206	4.33958992882459	3.93003474313679	0.410219073850153	0.42868722870475	0.795420465213011
Merged-chr9-103425123-4	chr9	103424632	103425632	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001002896, exon 7 of 7)	3' UTR (NM_001002896, exon 7 of 7)	1554.0	NR_040466	100529079.0	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	2.95316021776426	2.87513989865746	2.96033858326759	2.82787716137488	2.89298994495274	2.91311403692469	-0.247592191337566	0.718894585081763	0.927594408725531
Merged-chr12-105962827-4	chr12	105962332	105963332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-47431.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	2.81728167062816	2.74624062877143	2.94609000613435	3.18302821918824	3.37532501120164	3.1417661165776	1.97565635060647	0.00525091965859254	0.0633307034283474
Merged-chr11-53771494-6	chr11	53770976	53771976	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	1003.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	6.21621093457394	5.88867182803926	6.23114045060329	6.75725063816119	7.00631170967953	6.627379132721	1.13269239129168	8.84380305572754e-05	0.00255914731910353
Merged-chr11-115072814-2	chr11	115072314	115073314	+	999.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10775.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	6.48391932144173	6.09217829644955	6.22973214564489	6.08638974056988	6.14209855356637	6.49356175855009	-0.0621319917033929	0.839239495980861	0.962725890398731
Merged-chr5-141005410-2	chr5	141004910	141005910	+	850.9166869999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-4814.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.1364177321312	5.03013173590977	4.93321537896032	5.33836963694547	5.40077610822705	5.1107939773155	0.526936691332932	0.147363039084192	0.512227670074211
Merged-chr10-59236127-4	chr10	59235623	59236623	+	982.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14201.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	8.17850059456805	8.24957067697725	8.2357054136648	8.30183942065097	8.72234022906522	7.95349086863324	0.214705066764416	0.414489650052769	0.785828006486374
Merged-chr1-51938951-1	chr1	51938451	51939451	+	934.0	f0_balb.idr	Intergenic	Intergenic	-22973.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	4.88593230018362	4.88485807553561	5.24859621609444	4.52293702567644	4.33805458568898	4.67992983061248	-1.16346633295756	0.00612466796876979	0.0708200906538906
Merged-chr11-54866522-5	chr11	54866052	54867052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008248, exon 1 of 3)	exon (NM_008248, exon 1 of 3)	169.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	7.85795275165953	7.72445005940094	7.48256118251947	7.36480505278036	7.30916526184088	6.90877952911637	-0.708828732078334	0.00661267851733681	0.0749731235959342
Merged-chr6-31202792-2	chr6	31202292	31203292	+	832.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	B2_Mm2|SINE|B2	15682.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	2.56231356390906	2.58823861328456	2.88904471743017	2.5909552766389	2.44925379397253	2.6040443374358	-0.772032221540346	0.32714261629555	1
Merged-chr1-165193468-4	chr1	165192921	165193921	+	943.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	1012.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	5.1544220133413	5.36358087169937	5.54373238485728	5.64732179100031	5.71369829247569	5.57850870834584	0.569948971020731	0.0908015762448038	0.400988088110478
Merged-chr10-81139887-2	chr10	81139387	81140387	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	3616.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	4.06309258239841	4.37561521684489	4.74872140334138	4.557247348938	3.90282466044646	4.87938851572413	0.207425751403018	0.713173234869977	0.92541785131338
Merged-chr18-32818735-4	chr18	32818249	32819249	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1889.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	6.2745102071629	6.19873039394833	5.9956997677522	6.39083948811527	6.49775743446054	6.32070164511585	0.397316552863314	0.158170793610417	0.529855283817206
Merged-chr1-189660009-3	chr1	189659508	189660508	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	28078.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.37179030177653	4.46226351550966	4.45212962875955	4.63065970523671	4.36838662451592	4.75473494002654	0.385912816494886	0.37839489023558	0.760812923514454
Merged-chr3-108997485-4	chr3	108996978	108997978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	30129.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.48226453411761	5.31617503039031	5.46231678314603	5.33299963533614	5.55405470185099	5.9015212455313	0.356688502486584	0.31254108222667	0.707190484237326
Merged-chr14-21847179-1	chr14	21846679	21847679	+	661.0	f1_balb.idr	promoter-TSS (NM_176925)	promoter-TSS (NM_176925)	-399.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	2.71345489107536	2.60689999684135	2.80571556633898	2.76649728286881	2.59109097107183	2.81856743129072	0.0892993699516044	0.904418777259547	0.978131323042371
Merged-chr13-33934157-2	chr13	33933657	33934657	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1875.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	5.64689403201189	5.98347759967761	5.9926669576813	5.9871777554076	6.15028372710602	5.72972172613874	0.173364702483182	0.59237374000129	0.878003422897225
Merged-chr14-103342062-4	chr14	103341527	103342527	+	980.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	4773.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	6.16999683175005	6.06083983847769	6.18862336637291	6.3653183380108	6.58528243585653	6.44313437673753	0.55800797039106	0.0431174888090302	0.260489363887446
Merged-chr12-51971392-4	chr12	51970907	51971907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177171)	promoter-TSS (NM_177171)	-86.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	6.78395600610666	6.75667063126722	6.8163912884961	7.08271680161247	7.02968370311035	6.63139051705114	0.240822154087621	0.362907128310055	0.748463907111738
Merged-chr13-85441818-1	chr13	85441318	85442318	+	844.6666869999999	f0_balb.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-152332.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.42244923610601	2.59259878991564	2.62966330306217	2.29496699812088	2.25021534278385	2.45476981798731	-1.43500100227568	0.0920598949282599	1
Merged-chr10-40301508-4	chr10	40301051	40302051	+	987.091675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009665, intron 1 of 7)	CpG	635.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	7.27596031769534	7.14871499848355	7.36898231309881	7.44231151569044	7.40043557923073	7.07941888793233	0.0917746813577522	0.710260227925952	0.924293540432205
Merged-chr11-117777151-2	chr11	117776651	117777651	+	937.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	MTE2a|LTR|ERVL-MaLR	2497.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.13386449985942	4.03121255531252	4.39352907573041	4.12653196770262	3.76009338487063	4.20967791215463	-0.430283969367578	0.404827641189562	0.779791650050306
Merged-chr17-5174609-3	chr17	5174108	5175108	+	872.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179534.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.61833132638282	3.16485516950532	3.34221395722679	3.40399605996424	3.26266073650645	3.46965874050445	-0.0550120017026409	0.93051405671881	0.984578929459061
Merged-chr16-87708067-2	chr16	87707567	87708567	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	9113.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.29585280075386	2.45426975873017	2.58369054276791	2.61115425466943	2.49605196495116	2.71825916306402	0.966525826742592	0.234905757185079	1
Merged-chr1-165669105-4	chr1	165668614	165669614	+	980.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-34573.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.60235919682413	4.75043222936931	4.8637900359316	4.62754593208216	4.57008842623622	4.96102386120616	-0.043480024781959	0.917234287143823	0.981588017376699
Merged-chr2-167804436-4	chr2	167803862	167804862	+	933.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	113185.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.67370672197003	7.57442024696938	7.25534256170859	7.57676399623174	7.93707171211504	7.45123351944424	0.232811755424818	0.378145953918021	0.760496169904062
Merged-chr11-54787713-4	chr11	54787196	54788196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	7.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	7.5135069381848	7.64112412222617	7.34700911722169	7.14610317432947	7.26217073509804	7.34891705205102	-0.383559383604008	0.105617593557851	0.433760317994776
Merged-chr7-80439523-2	chr7	80439010	80440010	+	686.75	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-34074.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	4.78745558244495	4.67372989305453	4.77729843186583	4.91316050414032	4.9377252101461	4.88087635373041	0.379220683279331	0.324623401215143	0.717544999689449
Merged-chr9-16307161-3	chr9	16306649	16307649	+	748.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	MTE2b|LTR|ERVL-MaLR	71082.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.79206721459042	2.88959077980547	3.0533079802674	2.84654659335696	2.75111061948032	2.56655727762727	-0.932905073279031	0.22323156304958	0.618076123752226
Merged-chr1-136573686-3	chr1	136573191	136574191	+	804.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51210.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.11359776051088	4.08713191236672	4.00081103379918	4.70753426490513	4.59784703356041	4.62257810156726	1.50112858706161	0.000924340388491834	0.0169261696843373
Merged-chr5-143472205-4	chr5	143471679	143472679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7686.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	6.48774575359323	5.94394538584982	5.90259709456375	6.17624012130737	6.00379502317818	5.93953884867099	-0.177992620394409	0.589636224849724	0.876929488047755
Merged-chr2-132180576-4	chr2	132180076	132181076	+	918.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35256.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	3.92572483158033	3.82807392716237	4.17432818772236	3.82062020622395	3.80695078239441	4.24074673860715	-0.0446131445197299	0.933224549011249	0.985356091252617
Merged-chr16-21389286-4	chr16	21388780	21389780	+	935.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-33838.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	4.31269099471228	4.14702817487223	4.46113987262422	4.33003493405613	4.51535265672192	4.22019799648975	0.173454696958599	0.708040030997943	0.923606271223831
Merged-chr13-58475649-3	chr13	58475154	58476154	+	945.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-72311.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	3.66608982489394	3.70542541162152	3.50043663766937	3.47495144333051	3.61670031152348	3.51560929173111	-0.322537672899044	0.569584905138374	0.8688875602138
Merged-chr2-167767914-2	chr2	167767414	167768414	+	934.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76737.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.41385705492229	3.27302345932281	3.44459479536202	3.27399753622617	3.27895143181082	3.5146136641188	-0.0868175422811563	0.885933918614004	0.973636976161493
Merged-chr9-105133469-1	chr9	105132969	105133969	+	577.0	f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1664.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	3.48171070595692	3.61793973035176	4.25427440476722	3.774822096279	3.26585221350589	3.70518609859449	-0.7303808419176	0.262890202906803	0.660891219379409
Merged-chr18-24652789-4	chr18	24652298	24653298	+	839.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-893.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	3.61985980123881	3.31554916446345	3.53367388540235	3.21958956271458	3.33579915474664	3.08157801038848	-1.06725427508876	0.0997221942769091	0.421136841555491
Merged-chr9-16312856-4	chr9	16312351	16313351	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65380.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	5.67385272822184	5.86244995153426	5.78163781249366	5.49137434949294	5.83728548831456	5.35247555847208	-0.330996001041804	0.333023013408371	0.723935027979521
Merged-chr18-50034157-3	chr18	50033650	50034650	+	937.2666630000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	3166.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.82910455089202	5.40312022946957	5.21136062360641	4.77154282222737	5.23753603164568	4.81965277996914	-1.08618822249019	0.00947876774521145	0.0968335551311914
Merged-chr10-8743058-4	chr10	8742561	8743561	+	928.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 12 of 19)	intron (NM_175155, intron 12 of 19)	143009.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.74764516297463	4.0354701803471	4.07790926495899	3.98227671692685	3.65323903221939	3.85923936645252	-0.385666302903614	0.471091426056501	0.819882354723057
Merged-chr5-124715301-4	chr5	124714802	124715802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011596, intron 14 of 19)	intron (NM_011596, intron 14 of 19)	-9783.0	NM_019536	56087.0	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	5.57448540307189	5.56282027162549	6.14702255678923	5.43879130653717	5.67452240067549	5.72778233447696	-0.29193370452626	0.414631222964321	0.785927258654499
Merged-chr6-65144255-2	chr6	65143755	65144755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019455, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	475.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	8.62257659819369	8.78943730077546	7.83147363516135	8.15901124230009	8.46540096431627	7.34799157902007	-0.564305772898181	0.345523384458369	0.73389431458869
Merged-chr10-117145825-8	chr10	117145360	117146360	+	902.9345089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	2614.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	5.77679105952808	5.62337594351297	5.40665304076518	5.87811046604777	5.9551901506109	5.5652076783714	0.36384515893353	0.277302772669939	0.674534718283401
Merged-chr12-73310306-3	chr12	73309803	73310803	+	732.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 4 of 15)	intron (NM_001037717, intron 4 of 15)	23455.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	2.88458400780713	2.97992786564542	2.98553940395558	2.94081757202122	2.93988536764077	2.87586616079916	-0.137540744396723	0.840222830821906	0.962819298477451
Merged-chr12-111708782-2	chr12	111708282	111709282	+	774.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027404)	TTS (NM_027404)	4171.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	2.94756157388713	3.00836992330692	3.20548129272007	2.75169051247272	2.7560253423687	2.93894660405743	-1.18654328480226	0.0967080180892171	0.414629899193181
Merged-chr17-71158385-2	chr17	71157885	71158885	+	682.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25147.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	3.1685221510261	3.08368693428445	3.24080974010024	2.98469486855999	2.85274686533337	3.31147024606544	-0.475903346771275	0.488743354060218	0.829423271678195
Merged-chr5-21658818-4	chr5	21658314	21659314	+	931.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	12830.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	2.51531070923795	2.47997111882778	2.76769833211327	2.42701574975331	2.63397078506429	2.78159008572448	0.170152030901012	0.831481809504155	1
Merged-chr2-25583402-2	chr2	25582902	25583902	+	848.8333130000001	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001024616, exon 15 of 15)	3' UTR (NM_001024616, exon 15 of 15)	-3303.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	4.60275418736942	4.99608271895228	5.10263309269147	4.15968346677525	4.48508489528059	4.84007600498221	-0.924345700222527	0.05109301264088	0.288109744905282
Merged-chr17-29381645-4	chr17	29381146	29382146	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20732.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	6.18973308883117	6.23966926639042	6.45656578106197	6.2704906400226	6.54704852173259	6.14101606754614	0.0836726752253872	0.776096943037592	0.94480820353868
Merged-chr10-93095987-4	chr10	93095490	93096490	+	978.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-14394.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	4.86802868489053	4.6938093320149	4.95568474466536	5.61202986017623	5.15856626887815	5.522064854887	1.25061261306689	0.00114822747035656	0.0200339088600186
Merged-chr17-63871164-1	chr17	63870664	63871664	+	826.0	f0_balb.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-6902.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.30671540379745	5.4253945070845	5.37280072462162	5.55648520076382	5.64508199395937	5.40543373805995	0.343339761258583	0.301757843835498	0.698471866859468
Merged-chr7-139978740-4	chr7	139978234	139979234	+	953.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	21.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	3.67722605305561	3.67213462194583	3.83315125310463	3.41415451765937	3.31132804791612	3.43761514060464	-1.25747791090679	0.029786518567888	0.207891011323337
Merged-chr1-153434009-4	chr1	153433512	153434512	+	914.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033162, intron 3 of 9)	MTD|LTR|ERVL-MaLR	8803.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	3.9186328639307	4.37007266825464	4.49220945348769	4.15582726734831	4.20878143161216	4.39814782936546	-0.0637942182854671	0.898214920566512	0.976261391798139
Merged-chr14-60757898-4	chr14	60757419	60758419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10215.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	3.70874657974543	3.7629425634723	3.86584032270124	3.81149108252706	3.75767809882508	3.83606809632515	0.0755103708400281	0.8847745201148	0.973538624783452
Merged-chr3-30596220-2	chr3	30595720	30596720	+	806.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029690)	TTS (NM_029690)	3650.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	5.28055040754974	5.42069148481131	5.18109134456938	5.26118768794344	5.26740491951729	5.24553829267989	-0.093039999490383	0.788422855502529	0.948954880993192
Merged-chr7-141266542-4	chr7	141266111	141267111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252600)	promoter-TSS (NM_001252600)	-187.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	7.77002843542134	7.77515124450344	7.40905816000464	7.72989823041311	8.04202209038307	7.98774720811048	0.369455701348075	0.128748934768802	0.479799601167289
Merged-chr1-87854786-3	chr1	87854227	87855227	+	959.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_136921)	promoter-TSS (NR_136921)	-428.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	4.7063483871026	4.98764693192743	4.77840676265415	4.46034016519718	4.42876050214084	4.52237364643278	-0.878078685668007	0.0349857065601945	0.229508882959686
Merged-chr10-96646292-4	chr10	96645818	96646818	+	984.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29317.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.47363894653612	5.10582816894592	5.29820519579375	5.2299702432998	5.19401998916976	5.23436943523831	-0.168339831416548	0.637929827611509	0.897380718500389
Merged-chr7-24903335-2	chr7	24902835	24903835	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001130151, intron 1 of 29)	PB1D10|SINE|Alu	349.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	6.36456966145745	6.8768051841369	7.30002802604706	6.95793642063941	7.09056010205255	7.21677852794337	0.294949799456828	0.356741855982065	0.743448231367782
Merged-chr19-32112644-2	chr19	32112144	32113144	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9504.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	5.0195506953738	4.73277760968708	4.86234565894925	4.77489994154546	4.82576815219803	4.85320382601552	-0.135206196202287	0.730144982172004	0.930759951830614
Merged-chr11-79308055-2	chr11	79307555	79308555	+	617.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-31837.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	2.91029039518955	2.85815323633931	2.94049714735989	2.84160599857252	2.60726973371921	2.70447903184938	-0.95848642362666	0.192416718621815	0.579485697024285
Merged-chr4-135317430-2	chr4	135316930	135317930	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35784.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	3.17059189825401	3.05802659193993	3.13000542208214	3.16264907139217	2.82597576470281	3.31333255847805	-0.0422466402369809	0.951272836028535	0.988739118609235
Merged-chr17-26505605-4	chr17	26505142	26506142	+	974.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013642)	TTS (NM_013642)	2830.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.45578173978218	7.55721212692419	6.89350942938729	7.24106547032321	7.22662193449478	7.67137852380262	0.0702628377880885	0.81098031967514	0.955096593239846
Merged-chr8-70342376-4	chr8	70341845	70342845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030680, intron 3 of 23)	intron (NM_030680, intron 3 of 23)	10934.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.59385855613503	6.85007922360303	6.87762380811774	6.44893059414901	6.50735238433947	6.37950561646567	-0.517852949583242	0.0522536619876443	0.292218744987426
Merged-chr6-29360388-4	chr6	29359882	29360882	+	953.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_184053, intron 2 of 6)	intron (NM_184053, intron 2 of 6)	12276.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	5.58461485267295	5.12807182616865	4.6247918994631	5.16311666551141	4.61985625514317	4.44995182345539	-0.831107960020914	0.09881288008101	0.419333642002316
Merged-chr7-5101476-4	chr7	5101010	5102010	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15401.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	5.22295086746201	5.26660236407849	5.42046684819002	5.05227164094672	5.39166983930483	5.87726910037552	0.338764186163212	0.389608878905137	0.769251728541836
Merged-chr11-79870604-4	chr11	79870069	79871069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	91818.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	8.78733729149751	8.93210965622995	8.41454907297173	8.69269485403287	9.11265813339104	8.32613663744391	0.0348584749568303	0.901040631546294	0.977060870926891
Merged-chr2-5811168-1	chr2	5810668	5811668	+	608.0	f0_balb.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33866.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	5.41066621010779	5.40749083713464	4.98672336463972	4.8088837866748	4.82347646665545	4.90071341017107	-0.960661346395574	0.0120188465534672	0.114392634478749
Merged-chr19-46154337-2	chr19	46153837	46154837	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178930, intron 1 of 39)	ID_B1|SINE|B4	1779.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	2.79316105843771	2.45312863533965	2.53008573201837	2.95117837664972	2.65860526864031	2.80248487770561	1.09440915920442	0.174593411405685	0.55387428328355
Merged-chr1-181211539-4	chr1	181210937	181211937	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145514, exon 1 of 14)	exon (NM_145514, exon 1 of 14)	541.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	8.2098078368724	8.16779795916598	8.11348175061344	8.43188109942882	7.95655720737366	8.27997570769089	0.0981108178176942	0.672973206307432	0.911093139423607
Merged-chr10-30778488-4	chr10	30777989	30778989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	24837.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.59141630152121	6.5122967733416	6.00383066655573	6.16653812685872	6.36451518191101	5.82836046578288	-0.41929941891582	0.208061793450188	0.598962278902687
Merged-chr11-107467308-5	chr11	107466772	107467772	+	847.2000119999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	3448.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.31114173354302	6.19525045124939	6.11369726617524	6.56977512601801	6.50235325186017	6.30342098178613	0.419362252758003	0.131340620813967	0.484509238193321
Merged-chr9-22003949-2	chr9	22003449	22004449	+	705.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293650, intron 3 of 17)	intron (NM_001293650, intron 3 of 17)	961.0	NM_001293650	19089.0	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	3.58406577096714	3.7041639816894	3.57622151578218	3.61023740254945	3.57662974358227	3.59264098084493	-0.115814834860243	0.833818562020809	0.961104751385188
Merged-chr9-40762068-1	chr9	40761568	40762568	+	611.0	f0_balb.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39205.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.41914238068827	5.41666248171766	5.46093229360502	4.33960810336136	4.18995346939165	4.52268216371362	-2.54298603784016	7.79095626936543e-10	8.73679096039567e-08
Merged-chr14-47188889-4	chr14	47188385	47189385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008102, intron 1 of 5)	CpG	528.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	8.05941943955114	8.29518699461604	8.0663748000741	8.01427516819773	8.12647409437328	7.9431272187163	-0.161246796668707	0.460615676339502	0.814564932348408
Merged-chr4-134000944-4	chr4	134000428	134001428	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026144)	promoter-TSS (NM_026144)	-64.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	6.91746754318445	7.10673569182553	6.81734151209499	6.76768253879661	7.03966856049245	6.70040357519337	-0.160112256718579	0.546216826152096	0.858573157729455
Merged-chr12-21287479-4	chr12	21286977	21287977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1180.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	6.59795222883839	6.82348561715323	6.63160564742798	6.87297727813181	7.19793408061235	6.81982734967605	0.453393765858923	0.0917458321427609	0.403381093840679
Merged-chr5-135468501-4	chr5	135468001	135469001	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73955.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	8.00418114134535	8.07320119771839	7.8624271170703	7.90507296634595	8.28539769491007	7.75492514057324	0.0360837189128433	0.883911246168889	0.973466734537782
Merged-chr7-143650071-2	chr7	143649571	143650571	+	722.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023680)	promoter-TSS (NM_023680)	-407.0	NM_023680	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	3.96971833477369	4.23541812471021	4.18691683232621	4.30500175560367	4.29746746732517	4.47005714842565	0.598215356527873	0.200867981922442	0.590177367224668
Merged-chr11-120627146-2	chr11	120626646	120627646	+	642.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2144.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	3.03275404745791	3.31099791862375	3.50286509501233	3.12695662329463	2.87058030812685	3.57223232565026	-0.286644658427146	0.693981073376144	0.919141313420726
Merged-chr8-123189089-3	chr8	123188668	123189668	+	893.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	2933.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	3.16919445341574	2.74649593391076	2.88013590990402	3.14351919278286	3.0146938671192	3.25147053101196	0.84672562968888	0.239798354681798	0.636770540094307
Merged-chr5-115533819-4	chr5	115533309	115534309	+	945.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-25658.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	5.97508886818616	5.68004734642582	6.17195295271672	5.92591226213951	5.88568225300442	5.80896029777656	-0.124629859092611	0.695634791059813	0.919291538728398
Merged-chr5-140418787-4	chr5	140418276	140419276	+	979.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	-529.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	7.61822894924378	7.81314624104613	7.94309945899996	8.09127455499835	7.86582863983327	7.74804724753519	0.169040644259313	0.473880049764352	0.821137882646165
Merged-chr4-15234778-4	chr4	15234266	15235266	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-31054.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	5.09288796728427	5.11539550875664	4.90143855321112	4.14712420470828	4.08368014579678	4.35262619599867	-2.15069524813699	9.09861913211653e-07	4.99062558170832e-05
Merged-chr7-45704349-2	chr7	45703849	45704849	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-898.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	6.72551075569531	7.02701159043735	7.02956955154185	6.97783136814669	7.54665669886203	6.99289581961137	0.422791657676192	0.144216417143954	0.506955860361989
Merged-chr8-107403201-4	chr8	107402699	107403699	+	898.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008706)	promoter-TSS (NM_008706)	6.0	NM_008706	18104.0	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	2.66597131722146	2.46618472522307	2.42942281905963	2.56250197860608	2.59055317103337	2.75885485663002	0.620319143604349	0.435238076302818	1
Merged-chr10-111994431-5	chr10	111993929	111994929	+	941.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	2835.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	6.33620031523945	6.40243105043483	6.12614945580501	5.80271254803309	5.98162918338083	6.03035250295295	-0.614942309741549	0.0357318269993095	0.232370398850766
Merged-chr14-22808417-3	chr14	22807894	22808894	+	858.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-265596.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.58655869026448	2.38402944764265	2.62972097792669	2.23668675416086	2.27919886132908	2.51962687635884	-1.21392816074863	0.15871996603144	1
Merged-chr16-91453843-2	chr16	91453343	91454343	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11261.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.36416644218773	3.44153900498608	3.529392478736	4.03192910622199	3.91170982104883	3.91770011467758	1.77769407695042	0.00142054894485067	0.0237399149634734
Merged-chr13-30702387-4	chr13	30701877	30702877	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	42318.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	5.20084095875908	4.76243905753366	4.72650905165451	4.70116499512209	4.56374251664946	4.90699882931803	-0.454168497431387	0.285960451885683	0.6834270420832
Merged-chr4-154142364-4	chr4	154141857	154142857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021499)	promoter-TSS (NM_021499)	-15.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	4.04864332331711	3.97160957117464	4.14159564286172	3.98521749814272	3.91992517687128	4.20840216653416	-0.0495992583674508	0.919866427949809	0.982120898917633
Merged-chr19-3537897-4	chr19	3537398	3538398	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164159, intron 1 of 21)	intron (NM_001164159, intron 1 of 21)	37851.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	5.48219945636848	5.40036742013536	5.44931114925627	4.94594370178452	5.31156866661636	5.64529592022422	-0.235203352531954	0.531965170576588	0.851867550687707
Merged-chr16-3714118-2	chr16	3713618	3714618	+	594.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	4006.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	4.98227089272653	5.27577107974035	5.48936273435052	5.65598235697314	5.55414371744547	5.73492713559268	0.755388001117163	0.0326981477899479	0.220160825481954
Merged-chr5-113633045-2	chr5	113632545	113633545	+	950.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	10558.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	6.30210145028618	6.11260665002297	6.26248486011104	6.62670566158638	6.46066459760983	6.2182529061436	0.373556412569923	0.191586712942074	0.578241764680769
Merged-chr7-12780488-7	chr7	12779956	12780956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4798.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	4.88156866733858	4.81277562081249	4.45256541522277	4.16548125411772	4.31441745251353	4.02054411180613	-1.40732679497091	0.00315501228563306	0.0437902022123363
Merged-chr12-71015829-4	chr12	71015310	71016310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	13.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	7.84519497315576	8.05001195336434	7.53835641544172	7.69669339735196	7.95549734847953	7.8261221848667	-0.00540477418701264	0.982575932322415	0.996042763747469
Merged-chr2-120100047-4	chr2	120099541	120100541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	54534.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.97205547287711	6.67292577997085	6.92547337768223	7.01440449889632	7.32720801935062	7.01127214901895	0.417354513030372	0.112631163628057	0.448338447691312
Merged-chr8-11474004-3	chr8	11473491	11474491	+	666.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-3938.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.0392996417014	5.11352740854077	5.0246044483178	5.44205971893815	5.20393699405751	5.2921727635049	0.514870387664852	0.148372537071745	0.513915084072171
Merged-chr2-73039466-4	chr2	73038942	73039942	+	991.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58996.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.58999380435241	5.25027736939784	5.76755046240534	5.89242151676876	5.70285189869172	5.62041558062031	0.376755276450467	0.273929577957771	0.671314237996942
Merged-chr11-117146299-4	chr11	117145797	117146797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	31125.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	5.28287992609722	5.17177410250252	5.21787423764257	5.00459699667275	5.17875374415964	5.48712058470895	0.00760682519960606	0.9834889955725	0.99633715643266
Merged-chr5-96919198-4	chr5	96918711	96919711	+	859.466675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2061.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.43281400511925	6.00101873057719	6.33160355199611	6.67179194002004	6.48200100600517	6.76170695581039	0.603515501456733	0.0385093261668168	0.243127893840881
Merged-chr12-91585457-4	chr12	91584954	91585954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4195.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	5.41288267865035	5.41681399513712	5.81804810187255	5.58924437202052	5.32203470698634	6.00868880669137	0.195648269404426	0.603303229403777	0.882544198306255
Merged-chr10-86889791-4	chr10	86889279	86890279	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 41 of 68)	Lx8|LINE|L1	110774.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.71857447539471	5.96790402621449	6.00273851440684	5.58974000951337	5.5057253401983	5.99832695074894	-0.355039771440694	0.289196065524221	0.686706338298952
Merged-chr17-33759922-4	chr17	33759422	33760422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008997, intron 1 of 4)	CpG	564.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	8.46252587997231	8.61459452599822	8.08951803615505	8.32433442236355	8.6713357989796	8.18089417599139	0.00290536755403137	0.990987802687503	0.998113069044251
Merged-chr15-25288049-4	chr15	25287540	25288540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	125724.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	7.05421984614633	7.25943499965222	6.74933838273963	6.86981406428974	7.13991928649274	6.42084804644073	-0.28638991043344	0.357100187281929	0.743726917541594
Merged-chr7-45462876-3	chr7	45462379	45463379	+	785.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 5 of 5)	URR1A|DNA|hAT-Charlie	-2993.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	3.6550443641078	3.88151856645327	3.76069710643061	3.38655328113786	3.53473636372069	4.06036939891988	-0.274145237133932	0.650032360041131	0.902475350617976
Merged-chr19-41291509-3	chr19	41290980	41291980	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 13 of 16)	B3A|SINE|B2	-27476.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.45391507944583	2.64642417010644	2.45916817108573	2.72227233347354	2.66629268234316	2.72844645151445	1.00776176767565	0.199713593827103	1
Merged-chr2-31062391-4	chr2	31061868	31062868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	34132.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	6.03693585479764	5.90045329957589	6.14209348969743	6.07817081921081	5.72856918312672	5.91383475786991	-0.199883066564148	0.51621465832281	0.844051513295388
Merged-chr4-19576610-4	chr4	19576144	19577144	+	964.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025476, intron 1 of 9)	intron (NM_025476, intron 1 of 9)	1578.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	5.74088321854083	6.05580311683766	5.38883134569312	5.40901393407347	5.69100985993722	5.7175134491203	-0.288700865975157	0.421971211843662	0.790868109628963
Merged-chr8-124844681-1	chr8	124844181	124845181	+	549.5	f0_balb.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	18348.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	4.7761409266599	4.75124898059264	5.09841383163195	3.92823036504124	3.58193124615176	3.93744422256104	-3.09893316521638	8.16637742233789e-09	7.55008813953212e-07
Merged-chr19-21272185-4	chr19	21271668	21272668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-110.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	8.36116627337899	8.24416542166234	8.00980251321793	8.18918917050297	8.02244287015975	8.10923941629436	-0.156754132179907	0.47938735292037	0.824218176332717
Merged-chr7-81347132-2	chr7	81346632	81347632	+	903.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007755, exon 12 of 12)	3' UTR (NM_007755, exon 12 of 12)	-1898.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	3.4096298424025	3.49038123696111	4.21939021071454	3.34204024812783	3.19210751749128	3.53446053399105	-1.38745801190695	0.0377487193055347	0.240210724684531
Merged-chr17-87379096-4	chr17	87378592	87379592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	48649.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	3.92627949698462	3.65285751862887	3.95340490879859	3.5705063425341	3.40482822637386	3.45405909040775	-1.29572787174124	0.0240010120196833	0.182148504937414
Merged-chr17-66123637-4	chr17	66123172	66124172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001348292, exon 1 of 27)	5' UTR (NM_001348292, exon 1 of 27)	152.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	5.27395536306591	5.3533268792934	5.36354168776622	5.42083581342983	5.17949836649603	5.33500159094918	-0.037900329432072	0.912324813906167	0.980342621918939
Merged-chr3-89089292-2	chr3	89088792	89089792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001083808, exon 4 of 9)	exon (NM_001083808, exon 4 of 9)	739.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	5.59590570537513	5.65115475776642	5.60611986883427	5.76767759266976	5.7513498360954	5.36462498038745	0.0645955363144807	0.84514986936543	0.963760118842549
Merged-chr12-111438083-1	chr12	111437583	111438583	+	1000.0	f0_c57.idr	Intergenic	Intergenic	-4578.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	8.89558634591588	8.97176492801524	8.45239489347956	8.69272906221027	9.01303551878585	8.30249182757702	-0.12095073169997	0.658109656050618	0.904937992416562
Merged-chr7-4237206-1	chr7	4236706	4237706	+	846.0	f1_balb.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-548.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	6.80790930820518	6.49314703448023	6.76977496653435	6.65502045722991	6.73020650950516	6.68860643664753	-0.00191972277480999	0.994187331782062	0.998918571480046
Merged-chr4-19942822-2	chr4	19942322	19943322	+	950.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20256.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	5.47459379938665	5.62905924736674	5.60456712973916	5.41467581168544	5.41347263440981	5.24460828752585	-0.389924391234009	0.241364740354812	0.638385260200477
Merged-chr9-44320314-4	chr9	44319749	44320749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	33.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	6.26591367596043	6.00715247070403	6.13445284732222	5.80391853428184	5.95729388298753	5.79570948045185	-0.483873008856269	0.106567917684991	0.435868231160672
Merged-chr1-191073239-4	chr1	191072732	191073732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	10211.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	8.48669955703265	8.14322519762706	8.01783616799594	8.44712731428766	8.7658872886674	8.10367448198214	0.332894705565719	0.215568339808348	0.608978718828427
Merged-chr12-103337294-3	chr12	103336788	103337788	+	955.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18713.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	7.29056637295418	7.12253673143486	6.9927195946201	7.54491306690816	7.3941044124455	7.13240999594892	0.338652357211798	0.183145043479352	0.566110657076039
Merged-chr4-124710002-4	chr4	124709508	124710508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4853.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	7.24522961494916	7.07224343205121	7.53900898612375	7.38557686432385	7.46529408637371	7.58663652882569	0.277621145060382	0.269294275405788	0.666438561847887
Merged-chr13-93977286-5	chr13	93976703	93977703	+	898.849976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-80593.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.77976546138023	3.78721096055298	4.16889762325232	3.95553865076995	3.74581236994939	3.96730394628582	-0.081259627971191	0.878552612848119	0.971941098079671
Merged-chr13-58999811-4	chr13	58999320	59000320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192123.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	7.5881953476562	8.07335247344534	7.85366515348191	7.69588914984904	8.08180169294315	7.81990247432888	0.0359754066844708	0.887845616424998	0.973901873299666
Merged-chr11-104469465-4	chr11	104468981	104469981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-620.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	5.38007440165961	5.50211172890053	5.27758072795837	5.19583070710802	4.62390167020406	4.66352843333997	-1.11920236660414	0.0061370419338525	0.0709354515201636
Merged-chr3-65392654-4	chr3	65392151	65393151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026155)	promoter-TSS (NM_026155)	-98.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	7.73125862773256	7.79594977116103	7.53633934264092	7.51878289558484	7.47044608215013	7.21213214631003	-0.413142142437289	0.0822756465528552	0.379300348959498
Merged-chr5-124032312-4	chr5	124031783	124032783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177876)	promoter-TSS (NM_177876)	-23.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	8.15578769123678	8.07545731196973	8.0729836106145	8.1193443160933	8.0326632766397	7.77364283542467	-0.160824753169903	0.467406077389223	0.817985211950585
Merged-chr2-68782771-4	chr2	68782163	68783163	+	893.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78778.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.45709249065369	4.56835411762344	4.63835889796472	4.65180539372721	4.35539743871847	4.58521185395626	-0.0560468361809568	0.896271529136227	0.975793389723097
Merged-chr14-47735516-4	chr14	47735024	47736024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347525, intron 39 of 39)	intron (NM_001347525, intron 39 of 39)	71768.0	NM_001347522	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	4.2510175722283	4.20516647407056	4.28840992142855	4.04498512644397	3.85719414124092	4.51560903601702	-0.249147057298492	0.627081142130609	0.893003040807868
Merged-chr15-82344891-1	chr15	82344391	82345391	+	638.0	f1_balb.idr	3' UTR (NM_177391, exon 2 of 2)	3' UTR (NM_177391, exon 2 of 2)	-1155.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	3.36228446876122	3.17132919850456	3.36060462326537	3.19565812498126	3.27155942142783	3.2057118837824	-0.293392443563807	0.637514371967184	0.89735407749672
Merged-chr10-4388652-3	chr10	4388149	4389149	+	981.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033466)	promoter-TSS (NM_001033466)	-541.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	6.45994965128316	6.75366562559043	6.61118581045584	6.48919961176921	6.44074004323909	6.62072249036613	-0.163592012339225	0.542954462520594	0.857468369859798
Merged-chr19-21736459-4	chr19	21735980	21736980	+	870.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-41860.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.37010259250469	3.57053195382138	3.49952624913535	3.71036463759897	3.37730708792985	3.51575521622309	0.204673586686633	0.728110052400897	0.930395768235235
Merged-chr19-53128671-4	chr19	53128156	53129156	+	908.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11787.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	3.40668973541531	3.63737775276244	4.01469557769229	3.50298509641307	3.22746208756947	3.6183053219436	-0.88204454204774	0.160792769862628	0.533505255392359
Merged-chr7-102496853-3	chr7	102496351	102497351	+	899.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-2078.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	3.67301867694441	3.23493089509566	3.45294889392392	3.61880981149385	3.55644387702034	3.57974758078792	0.418382938486227	0.48539110633995	0.827450486557697
Merged-chr3-145925617-3	chr3	145925086	145926086	+	847.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	1324.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	5.09812189792944	5.59341497842528	4.99776859652696	5.57152955670164	5.61981283690064	5.17826317592682	0.407329936052682	0.305300639400485	0.701501724978019
Merged-chr16-16523890-2	chr16	16523390	16524390	+	788.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	MER21C|LTR|ERVL	3521.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	5.77978301637722	5.55804928251889	5.52221266289783	5.19680982768019	5.35064996193354	5.34452875729283	-0.635130685667694	0.0598872118570134	0.316809404551998
Merged-chr7-111083165-4	chr7	111082671	111083671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040131)	promoter-TSS (NM_001040131)	-141.0	NM_013507	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	7.63209445476353	7.36926287540314	7.51354713879615	7.40267472575677	7.46754461957828	7.47004187800066	-0.0912716966445078	0.690974752877796	0.918107200828061
Merged-chr6-38341983-2	chr6	38341483	38342483	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12620.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	5.77702075443508	5.5763938788062	5.48321583952344	6.08306050302324	6.07775881066793	6.13124943062388	0.83199155797647	0.0068416918488541	0.0768263826396022
Merged-chr5-146676689-4	chr5	146676179	146677179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-91440.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	2.794734861242	2.83814801263891	2.63518947449322	3.04686898606939	2.7004853783317	2.90407687343897	0.634544900312427	0.397267273071898	0.774181942949692
Merged-chr10-96330411-2	chr10	96329911	96330911	+	595.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	104204.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.23649494688977	4.1328449948364	4.33754549543684	4.0540973803848	4.10908021605498	4.36220629363119	-0.164360828026456	0.728394379837612	0.930478966998914
Merged-chr3-15575839-3	chr3	15575344	15576344	+	886.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-779.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	5.96576205431703	6.64201839511664	6.13463411582759	6.05039168855574	5.87027667861468	6.13057035217366	-0.463432726965802	0.164732355534395	0.539414026968871
Merged-chr12-112673779-4	chr12	112673283	112674283	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331107, intron 1 of 13)	CpG	493.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	7.41684057765106	7.22879810201032	7.06306227062605	7.52906234179589	7.24432766996944	6.58898214812459	-0.0885054256107619	0.779892857829204	0.945949149660645
Merged-chr14-30608952-2	chr14	30608452	30609452	+	669.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 3 of 17)	MIRb|SINE|MIR	1358.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.13057520508471	4.07332787843252	4.39987498748769	4.20212111092786	3.95750306510541	4.30077298476739	-0.133907761378524	0.78439608295867	0.947576747080331
Merged-chr4-63557470-4	chr4	63556957	63557957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1306.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	7.78604240576245	8.29630259718027	7.59722519231803	8.12687596842639	8.4497539223317	7.5490731426375	0.236933693405529	0.458353812361989	0.812981239724864
Merged-chr19-37543648-3	chr19	37543108	37544108	+	581.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-6810.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	4.24628670864408	3.98529171757057	3.8904483688894	4.01077621157288	4.26750155138715	3.79637001809677	-0.0115307120557802	0.982750532670446	0.996084390562607
Merged-chr5-142786770-2	chr5	142786270	142787270	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_178242, intron 4 of 15)	intron (NM_178242, intron 4 of 15)	30617.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	2.49766769071374	2.46242664782801	2.69026278421179	2.60925072816151	2.45156895884774	2.76317660681561	0.340227638543686	0.665910985768307	1
Merged-chr6-134120880-4	chr6	134120380	134121380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	85180.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.39178841404512	6.13012126103888	5.75533252890389	6.34370242475386	6.22889248746467	6.12164418389235	0.175715627536737	0.581744898411508	0.873425292899358
Merged-chr18-54853235-4	chr18	54852732	54853732	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136948.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.2788223747355	5.2109802547676	4.73502471551046	4.78486649142971	4.79061579204361	4.95969827497388	-0.57917959936551	0.151512171829032	0.518952882025607
Merged-chr4-133598893-4	chr4	133598383	133599383	+	908.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3285.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	4.31794282229984	4.15151287203293	4.43959029620029	4.03755912979513	4.09072653110652	4.3840120423032	-0.360260559413373	0.450957090319872	0.808742754301698
Merged-chr15-8442986-4	chr15	8442476	8443476	+	853.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	1487.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	6.47808890266633	6.72551842667841	6.60669949173609	6.75850244894011	6.89496731659045	7.08989547539888	0.484863025483406	0.0674244129583253	0.339619184277864
Merged-chr13-49267854-3	chr13	49267345	49268345	+	769.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015759, intron 15 of 17)	ORR1E|LTR|ERVL-MaLR	-19139.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	2.92044604588815	2.92419317413312	2.98283173378714	2.69406065895527	2.70195786955525	2.9384124271894	-0.839188699996554	0.24321621002831	0.640453164779192
Merged-chr17-10675231-3	chr17	10674731	10675731	+	892.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	164960.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	2.55739130821416	2.57452748900931	2.69793180422823	2.46793826773952	2.38113369557263	2.45808076666194	-1.07104087971481	0.179875475732422	1
Merged-chr9-110333965-2	chr9	110333465	110334465	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	609.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	3.83781571639573	3.44972832701555	3.88293442088284	3.76311901798294	3.3796291987017	3.42524758497612	-0.686749090534156	0.25883521988835	0.65636933728856
Merged-chr17-28006854-1	chr17	28006354	28007354	+	776.0	f1_c57bl6.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73730.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	4.77532413264601	4.51724756525837	4.74513575663299	4.29582140625647	4.28557525178364	4.26964689714598	-1.00396221777566	0.0220507919087095	0.172319643695581
Merged-chr13-35665673-4	chr13	35665176	35666176	+	946.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009881, intron 1 of 9)	MIR3|SINE|MIR	5814.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	3.03591214809487	2.60436920039203	2.76749320086495	2.68542212279299	2.49901553596922	2.44201577998781	-1.50750886750187	0.0716765513119419	1
Merged-chr12-69214550-4	chr12	69214039	69215039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13651.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	3.54884320979537	3.52299021309804	3.73531783970115	4.11571624455469	3.95855082240506	4.05251504038488	1.44839031668876	0.00646081058338966	0.0737234129213778
Merged-chr2-24950326-4	chr2	24949820	24950820	+	874.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_147179, exon 1 of 6)	5' UTR (NM_147179, exon 1 of 6)	162.0	NM_147179	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	5.585282023408	5.2711473413956	4.9409725754883	5.26951623386153	5.00105117573987	4.96883835685207	-0.439502801764291	0.269535625042164	0.666672224027477
Merged-chr6-31191184-4	chr6	31190684	31191684	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110470, intron 1 of 2)	LTR33C|LTR|ERVL	27290.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	6.34722946435512	6.29653306610789	6.15436976389331	6.4621240295814	6.47745825985513	6.19294895141365	0.195723435650179	0.485871238158259	0.827573679263522
Merged-chr8-18595568-4	chr8	18595061	18596061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_173189, exon 1 of 14)	5' UTR (NM_173189, exon 1 of 14)	430.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	6.34434819998619	6.4447062355928	6.33474059464774	6.33016579811898	6.36932326155517	5.81289986827391	-0.276010617527426	0.368426890954095	0.753380524534667
Merged-chr7-141308830-4	chr7	141308309	141309309	+	968.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016874, intron 10 of 11)	intron (NM_016874, intron 10 of 11)	16803.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	5.46816212108971	5.64137865730733	5.4156274850484	5.7863578843841	5.47358894700475	5.41693429390789	0.101992818008121	0.764437825008799	0.941979298344481
Merged-chr3-54246633-4	chr3	54246138	54247138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	90581.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	4.55793899199266	4.62145393173113	4.45490625350608	4.41997033103407	4.51871730806894	4.90335103066953	0.166644550169357	0.704570447255313	0.922487062173025
Merged-chr15-31613920-4	chr15	31613402	31614402	+	962.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11786.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	5.43124181415352	5.49893843026946	5.28961014511302	5.6328069704187	5.81803154842583	5.57089170820206	0.507431399871342	0.124546948844427	0.472225945306208
Merged-chr16-16554565-4	chr16	16554061	16555061	+	970.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	5658.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	6.60114690731746	6.62064009672291	6.31271172307008	6.23783657859991	6.15220452022846	6.2070703317294	-0.54374927908235	0.05009891868835	0.285015098196378
Merged-chr10-87753737-4	chr10	87753251	87754251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104514.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.62242809014232	5.06778705356166	4.72171772537629	5.4204123385214	5.14070384368715	5.09634576705388	0.85209368990742	0.0353574888543978	0.230873886258866
Merged-chr18-62046065-1	chr18	62045565	62046565	+	656.5	f0_balb.idr	Intergenic	L2a|LINE|L2	92990.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	7.23038564279156	7.00877969064266	6.97270910122565	7.15983796235824	7.50500375840302	7.50720812882673	0.479070736866136	0.0593300167521295	0.315462678959384
Merged-chr12-85220001-2	chr12	85219501	85220501	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145445, intron 2 of 7)	intron (NM_145445, intron 2 of 7)	520.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	6.18611465399946	6.38168593488382	6.24872780200202	6.59438423271393	6.33348025011953	6.3291814187762	0.244479693052387	0.383639537054419	0.76494131641868
Merged-chr4-141646807-3	chr4	141646286	141647286	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17329.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	6.41540234278579	5.93301530844555	6.1255026753827	7.07214162328663	7.3435853792407	6.9781472114838	1.52989085555892	1.62655784353558e-07	1.09766930287841e-05
Merged-chr10-88337985-2	chr10	88337485	88338485	+	648.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 3 of 6)	intron (NM_027878, intron 3 of 6)	19090.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	3.99754070301145	4.09517627848669	4.414714172988	4.08212903983412	4.17163490596322	4.76886684086652	0.516346632359198	0.323540354520168	0.716750421163847
Merged-chr17-85394547-2	chr17	85394047	85395047	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 5 of 10)	intron (NM_028576, intron 5 of 10)	223849.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.87255516759078	2.8909235894954	2.94963887845855	2.87405176953903	3.05076370648498	3.13569964968364	0.570331250072157	0.404163125357751	0.779401254629825
Merged-chr11-121708786-2	chr11	121708286	121709286	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	6359.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	4.50945233216083	4.59332217044017	4.55058899816163	4.48023966063324	4.19826197613343	4.83941088223394	-0.0813510276899018	0.860135504049296	0.967441103100897
Merged-chr15-58734770-3	chr15	58734255	58735255	+	774.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	88672.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.64174342663579	5.71909177633461	5.65836219608758	5.4796322568023	5.2680920168539	5.34298603716812	-0.592435702021339	0.0701257976453191	0.346765755658864
Merged-chr3-69127131-4	chr3	69126624	69127624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-32.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	8.57007052957826	8.44917427909989	8.24653764885137	8.12697911996065	8.15512995714129	7.93693421792574	-0.49369321595993	0.0254120913452643	0.188955674807857
Merged-chr11-29720944-3	chr11	29720503	29721503	+	856.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	2440.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	4.34865610361876	5.14886752274544	4.93753937292582	5.18501429265957	5.17219196037327	5.03888112878057	0.588963432487616	0.186303492734842	0.570803258887202
Merged-chr18-82533935-2	chr18	82533435	82534435	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025245, intron 3 of 3)	B4|SINE|B4	-20528.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	2.94442281539061	2.88895292841809	2.94536251674997	2.60035510791473	2.53915054831899	2.95978105502249	-1.16319669998517	0.133959511692153	0.489359523952737
Merged-chr5-54211950-4	chr5	54211443	54212443	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-138049.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	3.09571074953354	3.09479714010159	3.19150920918641	2.99021517437052	3.02814286269141	2.90778333051674	-0.665288772241986	0.319742801284075	0.713666721646712
Merged-chr18-62171657-2	chr18	62171153	62172153	+	623.5	f0_balb.idr|f1_balb.idr	Intergenic	RLTR17|LTR|ERVK	8328.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	4.69226319406083	4.65979162389051	4.66957180710334	4.4901685270534	4.51173465470753	4.5324578531103	-0.397803740265467	0.332815458989128	0.723873709415294
Merged-chr19-11119487-4	chr19	11118993	11119993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	11385.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	6.7120318850955	6.85607032567164	6.76875923696571	6.24097340464163	5.96538707650237	6.47240762336951	-0.895670243533265	0.0017383652236239	0.027738248780676
Merged-chr18-23866673-2	chr18	23866173	23867173	+	605.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	62703.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	3.68430095509743	3.64310486386473	3.80985322414947	3.7924753150693	3.79969436480039	3.55985088167797	0.0645261185089729	0.905770963699751	0.978479589062367
Merged-chr8-23207885-4	chr8	23207407	23208407	+	990.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018743, intron 1 of 12)	CpG	546.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	5.93476747484854	5.58922039164406	5.86830012720356	5.84865378322745	5.11282359417664	5.83497414131649	-0.308631088724033	0.420550543446533	0.789788738102311
Merged-chr5-105141313-2	chr5	105140813	105141813	+	684.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1727.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	3.56863684289811	3.19212846729553	3.35425339441055	3.62149421172681	3.24704789570652	3.83890218728129	0.736666184866863	0.254891935556635	0.65198679229535
Merged-chr15-57926571-3	chr15	57926076	57927076	+	848.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	14377.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.78181089586169	6.59313981180081	6.31389412938839	6.78416267284748	7.25458547458986	6.47708117967282	0.480690709558044	0.136534518415434	0.49364554591105
Merged-chr18-60767145-7	chr18	60766640	60767640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7456.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	6.79519716613658	6.78348969965334	6.75238045071906	6.66671744139171	6.87062484061242	6.46708848071452	-0.135351409244476	0.610824883180113	0.885849400663435
Merged-chr7-97079327-4	chr7	97078811	97079811	+	814.645813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	4.23580594047055	4.34519716735782	4.16425438634118	4.55943260810518	4.57575247627462	4.70639799711325	0.903298155416473	0.0400967377624002	0.249277994689381
Merged-chr2-181239791-4	chr2	181239340	181240340	+	819.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183162, intron 2 of 18)	intron (NM_183162, intron 2 of 18)	2187.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	4.56435316948285	3.95781947455937	4.35907823298246	5.60213065849759	5.2589154106964	5.2862576516776	2.4431674510485	1.51103421405109e-07	1.0272069843363e-05
Merged-chr2-166907897-2	chr2	166907397	166908397	+	780.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	1801.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	4.14663530604677	4.2563848801766	4.06084270459449	4.04140115365639	4.09955718537629	4.17715327748576	-0.164643041275962	0.728847091403639	0.930478966998914
Merged-chr11-44392699-3	chr11	44392206	44393206	+	893.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7357.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.63403653339706	3.51749069467959	3.5716554894279	3.3030539653768	3.27470983494681	3.48217519493319	-0.858096761996665	0.145224265900986	0.508320794747706
Merged-chr4-40173986-2	chr4	40173486	40174486	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 4 of 20)	RMER5|LTR|ERV1	30721.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	3.55010126602087	3.35845516973427	3.60932564053586	3.37731118684255	3.38216711312442	3.41307422799935	-0.436395939046049	0.45831247588388	0.812961658694989
Merged-chr6-82822112-4	chr6	82821582	82822582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47628.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.9372029633312	6.24049499147597	6.182453752974	6.145775832774	6.35048665211851	6.30276864583129	0.245078204741317	0.399201458919976	0.775712434823128
Merged-chr11-63097450-4	chr11	63096936	63097936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31546.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	5.05362147819709	4.58990329743224	4.71971170439353	5.37587630777139	5.44513741805101	5.32863493400779	1.20814328711004	0.00195814461736812	0.0304605154836356
Merged-chr12-70915360-4	chr12	70914868	70915868	+	902.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MT2A|LTR|ERVL	-22489.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	3.16117200317038	3.31216067166751	3.29568317587492	3.13014545845675	2.9071046189874	3.25617492842642	-0.688567070860958	0.298164707960206	0.694988207181153
Merged-chr7-97355347-4	chr7	97354857	97355857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16260.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	7.06334212609916	7.16109253712031	7.01235810360238	7.35404452518879	7.31175742299486	6.98657374077934	0.228668098050766	0.358637468008639	0.74501115798572
Merged-chr10-121961601-3	chr10	121961123	121962123	+	680.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	85692.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	3.13039149088978	3.33959906919842	3.28285545360837	2.88121981815409	2.93407491583359	3.00818353497348	-1.44347824356476	0.033890247586031	0.225216813444491
Merged-chr14-45351100-4	chr14	45350605	45351605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019637)	promoter-TSS (NM_019637)	-81.0	NM_019637	56291.0	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	6.54829333664964	6.27395960685382	6.36289663676542	6.56121886679652	6.15425613201936	6.13291567555272	-0.166774486428616	0.577298510921437	0.872117086580778
Merged-chr4-147904858-4	chr4	147904315	147905315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285922)	promoter-TSS (NM_001285922)	94.0	NM_001285922	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	7.4306863406576	7.91530039721052	7.26851372714525	7.92620872220627	7.76582868110787	7.18484366931623	0.136369023004182	0.658877777371892	0.905105559230557
Merged-chr2-167374634-2	chr2	167374134	167375134	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-25456.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.89272711024052	5.64269064319443	5.08595953091735	5.55039967379355	5.2546584195552	4.76811774625043	-0.677695749469261	0.12783327093961	0.478077702743631
Merged-chr8-112011378-4	chr8	112010887	112011887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	28.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	6.15348287529588	6.14690000473105	6.59346281038859	5.96534784236367	6.03746310514653	5.97109191169359	-0.524250355070382	0.0864421486091731	0.389424046397112
Merged-chr2-153136433-2	chr2	153135939	153136939	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001172117, intron 8 of 12)	PB1D11|SINE|Alu	-24862.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	2.86212049873823	2.82094141827131	3.20698140240092	3.12576195646748	2.804484498371	3.53131615055616	0.917227156509197	0.22314685856047	0.617965684228516
Merged-chr2-163918667-2	chr2	163918167	163919167	+	980.3333130000001	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	16.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	4.31799443200952	4.03754643628086	3.82749297927205	3.98791752223756	3.22647436992299	3.42643832167799	-1.5410193521778	0.0230940911101183	0.17768036366997
Merged-chr9-7556464-4	chr9	7555965	7556965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1964.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	3.46826124425862	3.54551282404183	4.00383387099642	3.5737877125188	3.36731273333717	3.70364699666712	-0.470504973687785	0.436498299715482	0.799492139444127
Merged-chr19-16130879-4	chr19	16130395	16131395	+	738.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1936.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	4.45229753810859	4.51278834807513	4.51243501819289	4.69517087360194	4.57915074562475	4.44951908337477	0.224034037496263	0.595594233040834	0.879549293510723
Merged-chr11-114867509-2	chr11	114867009	114868009	+	829.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110338, intron 3 of 3)	MER5A|DNA|hAT-Charlie	15479.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.07616207969458	3.52677564656552	3.7902358090941	3.93563277459859	3.65358451771106	3.95989935375328	0.0998368886761281	0.861208160905059	0.967789299492425
Merged-chr4-129067374-2	chr4	129066874	129067874	+	545.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9103.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	6.23525731551227	6.10479277434209	6.08400203991925	6.440494040743	6.60586503882316	6.12233501396186	0.45155304759821	0.126168191715335	0.475010311580905
Merged-chr3-158034159-2	chr3	158033659	158034659	+	680.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001093752, intron 1 of 12)	intron (NM_001093752, intron 1 of 12)	-2387.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	3.77243607215925	3.89109884409877	3.83634798645411	3.80639933165538	4.10404085280613	3.90617881375028	0.363650348314475	0.482737625928445	0.825764257746495
Merged-chr2-4446115-4	chr2	4445597	4446597	+	819.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45121.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.10670540174685	4.07858441181669	4.01919768671638	4.60172232865125	4.47283170152917	4.50668033874922	1.21982405692667	0.00740835471300101	0.0814675077014231
Merged-chr9-119088616-1	chr9	119088116	119089116	+	1000.0	f0_c57.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-355.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	5.35719150440227	5.21812422092674	5.56015457210803	5.82990835632965	5.63285244729631	5.59502849958874	0.600428096767512	0.0734973118064651	0.356239548016098
Merged-chr17-5887029-3	chr17	5886525	5887525	+	950.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025664, exon 2 of 18)	exon (NM_025664, exon 2 of 18)	45645.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	5.26227352248142	5.07520652612304	5.01074494648648	4.70864206291144	4.86640550204786	4.93165610375759	-0.626279027686925	0.100711621400433	0.423286414777412
Merged-chr9-45296731-3	chr9	45296228	45297228	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22372.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	5.66845208998881	5.54827690643123	5.72534520800567	5.62205601722575	5.46289064624974	5.29270939409129	-0.324922435000213	0.327637262917144	0.719793584677403
Merged-chr12-116597170-4	chr12	116596679	116597679	+	945.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011215, intron 2 of 22)	MTE2a|LTR|ERVL-MaLR	111459.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	2.40387296498265	2.52740174062185	2.6337204406423	2.88644818832417	2.68086466468565	2.83212247071028	1.60071879019096	0.0428596949507081	0.259545733324536
Merged-chr6-113629862-2	chr6	113629362	113630362	+	625.833313	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	5841.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	6.15904766088414	6.32113263066296	6.08833290270264	6.21891365249274	6.56334506857952	6.29870874707906	0.295617963171112	0.309319731139178	0.704954154714563
Merged-chr8-84856978-4	chr8	84856481	84857481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025648)	promoter-TSS (NM_025648)	-5.0	NR_152751	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	6.6124383083144	6.77944853521292	6.79487601591466	6.57808242624066	6.63634794981052	6.68472405833908	-0.15298203419633	0.549414293619893	0.860273914502926
Merged-chr2-34944914-4	chr2	34944437	34945437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	16835.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	5.89699638691658	5.90676468196226	5.76641415310703	5.37221840418362	5.49797413239256	5.37015649944675	-0.819288392099271	0.0102620030292092	0.102261063518583
Merged-chr18-50036836-4	chr18	50036343	50037343	+	758.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5859.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.28467079684651	5.05600923315114	5.29785638296415	4.85544390994802	4.71119027303605	5.04369174719835	-0.747524972337338	0.0504191548147992	0.285731724937838
Merged-chr11-76897987-4	chr11	76897475	76898475	+	956.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6570.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	4.92198568671836	4.56857882695694	4.32011598366191	4.64558025176392	4.79266012009013	4.74266491096164	0.210243920590329	0.637005362094427	0.897256731014262
Merged-chr17-57283991-4	chr17	57283506	57284506	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	4906.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.0827070550178	5.68682596670831	6.38091911254252	6.29775058061042	6.53230327017217	6.52665856523875	0.645512810589869	0.0451832405879045	0.268198536370264
Merged-chr4-145221672-2	chr4	145221172	145222172	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	25198.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	5.63354528047462	6.06797509898826	5.79056700262658	6.10854339417938	6.0493224295245	6.02281678265338	0.369795316241057	0.237292088003754	0.633672456067794
Merged-chr11-103016405-5	chr11	103015855	103016855	+	709.200012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	792.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	5.29505164924009	5.82708669343661	5.44196217985376	5.6434867086892	5.90724938367508	5.04456027653082	0.0870419155084696	0.833338713729349	0.961070491919313
Merged-chr1-87623884-4	chr1	87623406	87624406	+	990.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3594.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.87118436668528	6.62324200120926	6.71375333982269	6.68267706338338	7.15252752979186	6.89356056801049	0.295018091853246	0.282930561400889	0.680859708854013
Merged-chr18-88861752-4	chr18	88861232	88862232	+	898.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32475.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.23213822686161	3.38795458374626	3.56644172183057	3.38091596403921	3.42974850106117	3.73367064728747	0.448749770753035	0.460485314161459	0.814520074002194
Merged-chr11-8607343-4	chr11	8606842	8607842	+	912.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	57193.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.29595448239274	5.19871270521569	4.93817658777944	5.43300304333571	5.56392145589145	5.41967995781598	0.619484212601888	0.0812708794758627	0.377154899019943
Merged-chr7-19325986-4	chr7	19325475	19326475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15930.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	6.95854022658919	6.64596139041232	6.12014122782254	6.90606183940857	6.93514532478808	6.50688494023685	0.266406357523477	0.419553173224957	0.789091124470564
Merged-chr11-100588694-2	chr11	100588194	100589194	+	979.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019795, intron 9 of 13)	PB1D10|SINE|Alu	12803.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	4.42890779119126	4.10692614387098	4.44081726503424	4.58016403948381	4.47545568031751	4.50779598540294	0.491327741716063	0.272809993412755	0.669951714189667
Merged-chr4-55356113-2	chr4	55355572	55356572	+	783.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	ORR1D2|LTR|ERVL-MaLR	6030.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	4.21820995026821	4.40144496295019	4.70552657989618	4.76554243370384	4.64466282901538	4.44673874781993	0.45352661076835	0.314297989409544	0.708700303644741
Merged-chr11-98864182-1	chr11	98863682	98864682	+	627.666687	f0_balb.idr	intron (NM_197940, intron 1 of 7)	intron (NM_197940, intron 1 of 7)	584.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	6.22281105616363	5.52608910935023	6.16313826713009	6.35427666222426	5.95413259203109	6.3945254724622	0.404459450171508	0.254172127358597	0.651179145391095
Merged-chr19-47432079-2	chr19	47431579	47432579	+	712.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 1 of 14)	RSINE1|SINE|B4	32332.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	6.7621490472753	6.59307237722662	6.36455208040316	6.43932595878954	6.35921356818527	6.07582820493649	-0.457232389998746	0.115740523817428	0.454142106281266
Merged-chr2-84460120-4	chr2	84459612	84460612	+	957.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355271, intron 2 of 8)	intron (NM_001355271, intron 2 of 8)	14062.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	3.99557905508285	3.67314820910808	4.08378510890122	3.89367450173511	3.97837473020512	4.15119879410261	0.255630956801076	0.625174387743064	0.89246806537449
Merged-chr10-75834527-4	chr10	75834018	75835018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010361, exon 1 of 5)	5' UTR (NM_010361, exon 1 of 5)	363.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	6.60009445502491	6.9890719322268	6.02611398921	6.17941710369907	5.96774077152377	5.70263401381505	-1.05361470020769	0.00367569296417236	0.0488573578534909
Merged-chr4-136450519-3	chr4	136450023	136451023	+	953.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19238.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	6.14635687836021	6.03135122190477	6.20967995768581	4.99026285477406	4.66382717863433	4.92181993161188	-2.50806709271423	1.42565635440218e-12	2.6777881249909e-10
Merged-chr9-59487620-2	chr9	59487120	59488120	+	943.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1246.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	6.23992951964406	5.96165805572578	6.16028021557916	6.23581436815992	6.28123779143997	6.26167504739822	0.230087882765769	0.418603948357141	0.788726823651631
Merged-chr10-69185568-4	chr10	69185051	69186051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23001.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.71722637553248	6.95036002417307	6.77618588068844	6.66979809586643	7.1493395578858	7.15804371322139	0.294590611504504	0.28766937273636	0.685014682030254
Merged-chr2-14236296-4	chr2	14235796	14236796	+	914.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	(TTTTG)n|Simple_repeat|Simple_repeat	6882.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	5.58822300024316	5.4590519849997	5.36239893581169	5.67150679639996	5.57323923062305	5.65942502664735	0.287332501746418	0.376205176552616	0.759088227619915
Merged-chr8-71297806-3	chr8	71297312	71298312	+	705.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	25098.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	6.6145738962616	6.74959077696668	6.92923296151411	6.42499178630445	6.53966758862035	6.40007973316142	-0.481260746641105	0.0719478278196815	0.35227273184106
Merged-chr14-30876984-4	chr14	30876490	30877490	+	830.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-2267.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	5.57014097923875	5.7080491490423	5.5656541332322	4.95489487624962	5.28473830652991	4.93710109435286	-1.05135969029638	0.00398547500951613	0.0518080619577907
Merged-chr15-89180121-3	chr15	89179588	89180588	+	883.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	700.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	6.60000104196486	6.71143712650669	6.2754212428053	6.50595352569324	6.56502543579302	6.98633971817865	0.22775611999616	0.445749620520909	0.805334424093105
Merged-chr6-34607978-4	chr6	34607477	34608477	+	982.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	9473.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	3.94853682815019	4.11432947522567	3.92229344901877	4.07369320436709	4.26885406007217	4.14053416560741	0.474518460756912	0.330614738537071	0.722003862374483
Merged-chr17-45767175-4	chr17	45766695	45767695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32689.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	5.46828495704835	5.68475077643524	5.4893834134905	5.29836599196693	4.52399653125404	4.65788814804853	-1.37966858228322	0.00146629532033473	0.0243139699112021
Merged-chr1-75236940-4	chr1	75236440	75237440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001159885, exon 1 of 9)	exon (NM_001159885, exon 1 of 9)	238.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	7.49140794537657	7.80562250673821	7.49296122040197	7.32449092046884	7.36880338825089	7.17634437761535	-0.458962870058898	0.0579497069345691	0.311048846252846
Merged-chr7-68756985-4	chr7	68756492	68757492	+	964.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7754.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	3.8703811400663	3.94536509785055	3.99650299744619	4.14240720088498	4.07744980115485	4.20429492361109	0.598097510298551	0.217192139002782	0.610936495914344
Merged-chr17-56883871-4	chr17	56883371	56884371	+	987.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 10 of 13)	intron (NM_030141, intron 10 of 13)	8238.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	4.12081065393601	3.95085461821425	4.15586638448889	4.36045304047055	4.52554436020873	4.07760729447512	0.745020260737373	0.124735516022673	0.472416605244177
Merged-chr11-83605715-4	chr11	83605210	83606210	+	889.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-12623.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	5.51920772570646	5.5397419965314	5.6193701025505	4.93842965021616	4.83112139268604	4.76688467046238	-1.4560879250301	5.47993987726165e-05	0.00170203373388275
Merged-chr7-101649694-3	chr7	101649224	101650224	+	920.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14044.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	6.87524281042589	6.72180427540299	6.64383934883151	6.24805162125642	6.57288743564334	5.84924935272443	-0.764370892800722	0.0165233154171979	0.142246904175151
Merged-chr19-41321376-4	chr19	41320879	41321879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-57375.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	7.27389318129392	7.10165114888583	6.99234272861069	7.15363735236608	7.32335279936279	7.15543764705642	0.126818499171762	0.603314074523075	0.882544198306255
Merged-chr16-57230110-2	chr16	57229610	57230610	+	568.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	1356.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	5.24828596858949	5.41194629127223	5.24683073820932	5.69296542774847	6.05885437777297	5.50604037137259	0.901387465093784	0.0105735162722763	0.104501857938421
Merged-chr15-98933964-4	chr15	98933470	98934470	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011654, intron 1 of 3)	CpG	420.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	6.67262729024511	6.22734552789647	6.63847006057682	6.46175515230753	6.56060622398023	6.74350092710417	0.104339254727905	0.718103521984464	0.927278280785923
Merged-chr5-72797395-2	chr5	72796895	72797895	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	MTEa|LTR|ERVL-MaLR	-44618.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	2.85944521621044	2.97479750106383	3.26385732445244	2.84917200671065	2.76748839401432	3.28217710796517	-0.263991274561227	0.721375638029296	0.928468816889347
Merged-chr1-88285920-2	chr1	88285420	88286420	+	616.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8341.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	3.49290627614746	3.69919717417319	3.69509497356282	3.41757106026492	3.65367721639987	4.21033843848782	0.539557325140245	0.380781712033365	0.762800321589017
Merged-chr8-84701753-4	chr8	84701249	84702249	+	936.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008535, exon 1 of 4)	5' UTR (NM_008535, exon 1 of 4)	292.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.33358383075789	6.29217100683056	6.47091254569484	5.96522160561316	5.85833553247027	5.94550562922872	-0.751782130862206	0.00813812606152222	0.0870717748909786
Merged-chr2-102976405-4	chr2	102975901	102976901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-74736.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.03790514020996	6.77744132004232	6.64019670106465	7.54325829884936	7.4768766994708	7.24816205147128	0.895193643985769	0.000571094523612179	0.0116612596615269
Merged-chr18-46740959-3	chr18	46740451	46741451	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	628.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	6.4288813740658	6.55408179147913	6.21692583880425	6.78892989017698	6.83324383379203	6.29972778657217	0.413263636223923	0.166193183980023	0.541321633626
Merged-chr13-9392005-2	chr13	9391505	9392505	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	115480.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.48863520902617	3.57172956040613	3.60600253929421	3.38159736250529	3.54946798233324	3.46108359211451	-0.309404843218075	0.590268167589547	0.877135729499364
Merged-chr10-7473684-4	chr10	7473208	7474208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-231.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	6.195781245041	5.80605520793252	6.23039883855322	6.25651443187269	6.32277039495859	5.9086525362316	0.169796566905003	0.59331663493599	0.878446784669333
Merged-chr19-46485412-2	chr19	46484912	46485912	+	929.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16236.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.71805870583076	4.74678644114854	5.11383762131726	5.22577042184398	4.77401921170801	4.6636371123264	0.116303465016138	0.786988215040261	0.948693859994902
Merged-chr4-119968242-7	chr4	119967704	119968704	+	915.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	153526.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	6.30882834359026	6.22730012270621	6.43625906528356	5.84864164810676	5.90627373811904	6.11168002263065	-0.627852630293906	0.0303604684460822	0.210484407470555
Merged-chr6-128425641-2	chr6	128425141	128426141	+	947.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133927)	promoter-TSS (NM_133927)	-731.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	5.00339379978691	5.20507554852389	5.05477924874763	5.25658711050619	5.1785409498734	4.97399480269475	0.114641260941706	0.75534792775593	0.939280126322077
Merged-chr2-155930137-4	chr2	155929652	155930652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_018888, exon 1 of 10)	5' UTR (NM_018888, exon 1 of 10)	158.0	NM_001355443	56046.0	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	5.98900265400119	6.13594782877654	5.90059850264015	5.8738319842946	6.00275458394183	5.8880227934517	-0.159285030204892	0.592044123590312	0.877880937493524
Merged-chr7-114317569-4	chr7	114317068	114318068	+	998.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-41452.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	5.97858311802087	6.01490723645202	5.77832849039437	5.34039805960808	5.60754155621566	5.84001017533999	-0.597275906827466	0.0704102637822546	0.347713868635099
Merged-chr7-82802486-4	chr7	82801991	82802991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46847.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	5.20274807375477	5.1246618225663	5.30561908909911	5.32735179414301	5.53985184102894	5.45857915014943	0.47902239999217	0.162740152340771	0.536188662408322
Merged-chr6-88901675-3	chr6	88901153	88902153	+	996.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	-598.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	7.24100249923199	7.69387122405691	7.44393859694177	7.35651046439948	7.76215181520014	6.99511466949359	-0.0777107042669375	0.794089357235937	0.950561052169434
Merged-chr10-83648746-4	chr10	83648196	83649196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145220)	promoter-TSS (NM_145220)	-32.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	6.99248101000994	7.25264092052429	7.06965322380027	6.75727345883633	6.76029190501868	6.67570407859411	-0.580579918432475	0.0202122266434275	0.16258918153833
Merged-chr16-43448244-1	chr16	43447744	43448744	+	810.333313	f0_balb.idr	intron (NM_181058, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	-28048.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	4.98199787691132	4.9814171781561	4.82599148713596	4.92278790566812	4.90472709892761	5.23406974014465	0.174552896066009	0.6502923697974	0.902576889668442
Merged-chr15-95790848-4	chr15	95790342	95791342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-1.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	8.31063607635905	8.45834272376521	8.03982278173676	8.3452341907065	8.5042863269416	8.14644565654983	0.0817612035307833	0.728871495170555	0.930478966998914
Merged-chr8-83608112-4	chr8	83607619	83608619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-56.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	7.49399008710037	7.37368369959186	7.47920170831154	7.39410078346245	7.41461135690041	7.78658967054838	0.12967158577572	0.594051159767291	0.878814651742644
Merged-chr2-73459371-3	chr2	73458865	73459865	+	845.577759	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5476.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.39452318172168	5.17056146504861	5.48210861448094	5.75169151539111	5.65471215331515	5.48659379860391	0.560438215997633	0.0972918190033786	0.415876794186434
Merged-chr13-67060350-4	chr13	67059856	67060856	+	796.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166218, intron 1 of 3)	Lx8|LINE|L1	814.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	3.9363767631587	3.9285352504893	3.92860186785659	4.01615904786286	3.85660061723192	3.99763930508785	0.0694600266584699	0.889148723242833	0.974207858658472
Merged-chr8-70234487-4	chr8	70233900	70234900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133972)	promoter-TSS (NM_133972)	22.0	NM_133972	76813.0	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	6.52807233573886	6.84529423981246	6.7984824710506	7.15176965186461	7.10207170253824	6.62804562894856	0.403269975847111	0.154894804524505	0.524183835210924
Merged-chr19-41974261-4	chr19	41973773	41974773	+	969.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	6863.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	7.56278178953528	7.57788181092215	6.93284335464148	7.73444194156461	7.9143600572579	6.97592355534596	0.309690805354365	0.356439249423566	0.74326734997459
Merged-chr11-4183975-1	chr11	4183475	4184475	+	545.0	f1_c57bl6.idr	Intergenic	Intergenic	-2858.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	2.83274715207783	2.65893998280856	3.01195236511843	2.76471134273853	2.78420878677112	2.91140894646803	-0.0892432584863763	0.902400674803379	0.977478362198987
Merged-chr18-70643771-4	chr18	70643296	70644296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75504.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	6.31334512896185	6.45473411779206	6.48792294193372	6.93296975636154	7.04188684964121	6.61853975417288	0.742233126048547	0.00633426035556816	0.0727195462564713
Merged-chr16-23288128-2	chr16	23287628	23288628	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2342.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.48893061161803	6.67413498370508	6.59318306096091	6.27502280763858	6.36002582183348	6.71505412928893	-0.21583589587483	0.444107184013562	0.804030822375159
Merged-chr10-17724304-6	chr10	17723819	17724819	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010828, exon 2 of 2)	exon (NM_010828, exon 2 of 2)	1091.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.01558920338439	6.15259161700121	6.29463027148328	6.1801812762742	6.00704080171884	6.42677369431978	0.0870051693808804	0.77231400124388	0.943716660313239
Merged-chr11-93968416-4	chr11	93967934	93968934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	87.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	7.03984311881824	6.96047975840488	6.69112911244949	7.24398796368968	7.17604741701461	6.49159975822166	0.172193243633634	0.575299133480936	0.871003662706412
Merged-chr2-145889431-4	chr2	145888899	145889899	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13842.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	6.99735625309662	7.06946950751911	7.27133345933995	7.31722295108052	7.39932864985167	7.46597707526702	0.422628686434512	0.075458458814655	0.361720672949062
Merged-chr2-167786079-4	chr2	167785596	167786596	+	987.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	94919.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.04417153145756	3.58703813923478	3.65239764648982	3.83963134760307	3.84420295110127	3.72430680786652	0.0729310393938584	0.896317349954666	0.975806926657291
Merged-chr15-57912141-4	chr15	57911636	57912636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167679)	promoter-TSS (NM_001167679)	-63.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.20972422410025	7.13358079637598	6.52582988778639	7.37361739838462	7.74788447432203	7.36335846687148	0.756643538492471	0.0111815401702796	0.10877979591823
Merged-chr10-62449253-2	chr10	62448753	62449753	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027926)	promoter-TSS (NR_027926)	93.0	NR_027926	74706.0	Mm.402550	NR_027926	ENSMUSG00000097129	4930507D05Rik	-	RIKEN cDNA 4930507D05 gene	ncRNA	7.75020887764907	8.0699399427557	7.50131122760926	7.66242495309199	7.74541861888572	7.51643783109675	-0.222782184481912	0.382087232133193	0.763770585964029
Merged-chr13-42050623-2	chr13	42050123	42051123	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1398.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	7.80374125173576	7.81854144659932	7.70564523114158	8.16079812502269	8.56154851424749	7.973177619591	0.688091508110696	0.00562270243997755	0.0665843247915672
Merged-chr2-118263983-4	chr2	118263487	118264487	+	816.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7021.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	5.79140902916251	5.45720361665168	5.1498926584892	5.51288139904511	5.69618641578105	5.68407076428395	0.237889560224615	0.511313170177795	0.841332560741837
Merged-chr18-39241160-4	chr18	39240654	39241654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246091.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.60752570286565	5.45557958555947	5.20380635472929	5.40524006239249	5.44325994337737	5.54901163077916	0.0367454720702905	0.914976312577201	0.980959026698783
Merged-chr4-133673220-4	chr4	133672712	133673712	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	-46.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.66026607352994	7.7415051809809	7.94405998909399	7.45795443564042	7.91405236313536	7.54907033770846	-0.172041688143711	0.493694098791617	0.831547915472416
Merged-chr11-118173204-4	chr11	118172701	118173701	+	945.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	39541.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.88236407482578	3.76154130536014	4.08932563725241	3.53462894672899	3.63092639064142	3.83566226841691	-0.797994444547636	0.14563297102619	0.508806562677333
Merged-chr2-34418559-2	chr2	34418059	34419059	+	914.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290626, intron 1 of 10)	L1MB7|LINE|L1	11708.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	3.29558742896382	3.41938518673628	3.86843002617884	3.690751662581	3.86326904080668	4.19609889810145	1.27484323622226	0.0377051142757696	0.240135258221067
Merged-chr6-39226725-4	chr6	39226254	39227254	+	948.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19981.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	7.14363468132857	7.04729487844383	6.89885433709328	6.85680392890558	6.98660103869145	6.33882284302847	-0.407988551671288	0.161019447757184	0.533682780680334
Merged-chr2-34406859-4	chr2	34406382	34407382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177345)	promoter-TSS (NM_177345)	31.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	6.03564191977993	6.16312154264284	5.83202255152457	6.145277570402	6.17873908911148	5.84157242171467	0.0813343813496604	0.791435926683082	0.949737938863565
Merged-chr7-45621680-4	chr7	45621130	45622130	+	728.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001018013)	promoter-TSS (NM_001018013)	-181.0	NM_001018013	73456.0	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	3.43515936206031	3.21980116770187	3.27451911803483	3.29992222847914	3.22631701705247	3.28881879212688	-0.179942431882458	0.769919351225031	0.943288660483433
Merged-chr5-121594774-2	chr5	121594274	121595274	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-950.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	6.37321556888477	6.86607262727282	6.38253628599919	6.42728869396906	6.71628811443689	6.3632790457459	-0.0805797044837114	0.791976732342937	0.949839887482488
Merged-chr4-43402328-1	chr4	43401828	43402828	+	741.0	f1_balb.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-4174.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	2.95057407717983	2.92486019253176	2.98329558084987	2.79378269843222	2.70522630628579	2.81478545468592	-0.937697163964274	0.185857301966742	0.570175160932842
Merged-chr2-32589490-2	chr2	32588990	32589990	+	543.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001276425, exon 3 of 6)	exon (NM_001276425, exon 3 of 6)	2412.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	4.64364182223315	4.85236577283216	4.83394050372446	5.0548125367119	5.04254511807456	5.11076211607172	0.636011724544037	0.0945225859617272	0.409808010249239
Merged-chr1-125474327-4	chr1	125473821	125474821	+	963.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-38594.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.05549930774954	5.90984559748565	6.26479224315799	6.23388718204424	6.23818422184067	6.2257153152676	0.269457494229849	0.351553487343741	0.739384389685474
Merged-chr12-31938698-3	chr12	31938193	31939193	+	856.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 3 of 8)	intron (NM_177993, intron 3 of 8)	11552.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.9189325094334	3.75459541564885	3.92898187290286	3.92623945049429	3.71226155472771	3.63270538113583	-0.325963765288114	0.541994577683307	0.857034750433211
Merged-chr16-70394522-4	chr16	70394033	70395033	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	80584.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	4.08842112169976	4.19524047319901	4.08179380379919	4.25579020464793	4.48225827723065	4.76906922942133	1.0190735421663	0.0318609192711499	0.216461937673224
Merged-chr4-47275791-2	chr4	47275291	47276291	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67779.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.23109495654556	5.14668571390872	5.1911987538229	5.33661903337429	4.86877711928626	4.93766567285184	-0.260283577638102	0.49616389751075	0.832887171202415
Merged-chr17-67344474-2	chr17	67343974	67344974	+	730.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	9985.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.87390208684421	7.01664612470722	6.52073557559591	6.89537601371125	6.7014116991701	6.87567640557277	-0.0140804483234593	0.959037448091187	0.990174309444982
Merged-chr8-105341497-2	chr8	105340997	105341997	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	6473.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	4.22090512911707	4.4044015318144	4.42664213717582	4.54193618658122	4.8483439570859	4.77392920886636	0.936355166018389	0.0303836019468054	0.210609692668259
Merged-chr7-43659293-3	chr7	43658760	43659760	+	812.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_031181, exon 2 of 7)	exon (NM_031181, exon 2 of 7)	901.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	5.693716257058	6.05401890351624	6.50603737736548	6.48244551709173	6.52728494030942	6.79210728615342	0.79960654102253	0.0169622154086243	0.144685133387125
Merged-chr16-32177033-4	chr16	32176529	32177529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2771.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	7.15863061478696	6.84879842990731	7.13860066698893	7.18251981187819	7.28160180617003	7.24388778314885	0.278617358393141	0.257565626787898	0.654973161886306
Merged-chr4-151999675-4	chr4	151999187	152000187	+	987.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3508.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	4.7271297638227	4.80413208316616	5.06044257008844	4.7459220546234	4.91119698627946	5.09167004714476	0.125296931187978	0.753413813142784	0.938549578325581
Merged-chr7-46958966-2	chr7	46958466	46959466	+	545.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-448.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	3.19563694798271	2.94429930211411	3.06864717121918	3.14334800212271	2.77342881613836	3.08236341433828	-0.30805674791206	0.661839640733186	0.906495637422278
Merged-chr11-101115743-4	chr11	101115218	101116218	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155071, intron 1 of 6)	intron (NR_155071, intron 1 of 6)	4123.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	5.98973885079669	5.82380234106015	6.12838963655517	6.36814793480768	6.35697205161114	6.32972535176212	0.635051993450014	0.025834889187182	0.190554422498663
Merged-chr2-84602431-3	chr2	84601941	84602941	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47039.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.65656401446106	4.62064796389461	4.96216212407069	4.71355376768025	4.80681546845767	5.24215020990426	0.415458084308444	0.327638953221525	0.719793584677403
Merged-chr2-156992137-4	chr2	156991635	156992635	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013865)	promoter-TSS (NM_013865)	-24.0	NM_180956	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	4.77037721954619	4.65483687374747	4.42299964322935	4.69288553119471	4.3311738931988	4.30265230372056	-0.428758994102223	0.342614608811885	0.731506629632026
Merged-chr2-170347468-4	chr2	170346994	170347994	+	877.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001164369, exon 12 of 12)	3' UTR (NM_001164369, exon 12 of 12)	-8867.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	3.81510981959534	3.67527084579823	3.61585307723256	3.40311322947556	3.76278663076265	3.68647416303762	-0.261804776371519	0.646860099093409	0.90114476203283
Merged-chr7-67444817-6	chr7	67444231	67445231	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-71873.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	6.22508398818303	5.96235402404093	6.41834317806788	6.23409989958341	6.16785240136537	6.29347334416382	0.0404799913209975	0.89121577509356	0.974793404994892
Merged-chr15-5241896-3	chr15	5241384	5242384	+	958.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2303.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.35397897215089	4.04844381450414	4.39499352338476	5.03642936410615	4.73934482369388	4.7922477170793	1.46155057327197	0.0010050007952703	0.0180926235769908
Merged-chr11-98358365-4	chr11	98357879	98358879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	11.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	7.34386279348784	7.43162558062271	7.46312314690136	7.63285173619282	7.59175610007415	7.37067494589343	0.191366981347828	0.405259848724701	0.780049815379569
Merged-chr15-85076506-4	chr15	85076001	85077001	+	827.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 19 of 24)	RLTR42-int|LTR|ERVK	33759.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	3.74943388741341	3.49778619756323	3.9203525935433	3.73780137413189	3.66086664953388	3.84644768765938	0.065367020856556	0.906229540048154	0.978619230507921
Merged-chr2-27702563-3	chr2	27702070	27703070	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-6722.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.53797238834193	5.66858570872344	5.96031426133553	5.24564293557581	5.62951363612585	5.93426519211452	-0.183196767537059	0.617611341527643	0.888822321093559
Merged-chr16-78265193-4	chr16	78264686	78265686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9732.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	7.12610683892609	7.48191886147755	6.85350475187363	7.24899899196835	7.42210607695588	6.76512427747348	-0.00573128835544386	0.985125989915845	0.996873682039026
Merged-chr17-35199578-2	chr17	35199078	35200078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001278601, exon 3 of 3)	3' UTR (NM_001278601, exon 3 of 3)	2429.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	3.66936762530038	3.55221956410978	3.69409769448953	3.81193085522792	3.56965942703812	3.86354048832451	0.371286794654931	0.499721016275933	0.834687375989398
Merged-chr3-38112765-4	chr3	38112262	38113262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95357.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	4.30481826767068	4.20062129024785	4.26011930097258	4.3295399303889	4.19110997205855	4.41410916219019	0.139717368275792	0.75845699472748	0.940151248405731
Merged-chr2-93600487-2	chr2	93599987	93600987	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-41947.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	5.45532834922697	5.20550768697167	5.75058229105323	5.69894741923655	5.23800390787697	5.68912377222131	0.137191874929887	0.714446682720567	0.925889785624598
Merged-chr2-27751491-2	chr2	27750991	27751991	+	803.983337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	40908.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.83341063219274	5.07653118438169	5.09682824468184	4.83305248083939	4.61771703447639	5.25204620284575	-0.198697548934428	0.636007670567317	0.896888844209225
Merged-chr4-139192721-4	chr4	139192225	139193225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009798)	promoter-TSS (NM_009798)	-174.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.56002197683607	7.56161107611246	7.44125567060345	7.53943650945456	7.88095070480672	7.55967554318679	0.221243757779418	0.351001276628275	0.738927106247438
Merged-chr1-87038533-3	chr1	87038041	87039041	+	916.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	51387.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	4.33485031641216	4.35228460011005	4.56407470573571	3.9712550404751	3.73414226503571	4.22386442313995	-1.2417879089036	0.0137851677808442	0.125441408651409
Merged-chr8-75067507-4	chr8	75067048	75068048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011622, exon 13 of 15)	exon (NM_011622, exon 13 of 15)	-26070.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.84789655506658	7.12511368124155	7.27929199613623	7.44863853954734	7.50744048489095	7.06634459514408	0.407309914301374	0.13012352874062	0.482323812471726
Merged-chr1-165735016-3	chr1	165734520	165735520	+	880.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26926.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.80913359204931	4.94236188740428	5.28933134157654	5.65610762490684	5.3820327217866	5.41728898057834	0.162842128583415	0.691367766309676	0.918275389711443
Merged-chr17-81426483-2	chr17	81425983	81426983	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	311904.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	2.29708874901387	2.19657186374978	2.40064928634415	2.08112981706094	2.36994621750866	2.14745997063649	-0.597640828852355	0.515564164898047	1
Merged-chr11-120437457-6	chr11	120436874	120437874	+	999.595215	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199469, intron 1 of 15)	CpG	326.0	NM_001195023	217365.0	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	7.50588899023044	7.01078007021099	7.12058134381161	7.15913406066772	6.91778607085815	7.25047907007315	-0.186461760786473	0.494410163568417	0.832021999297633
Merged-chr3-116072740-3	chr3	116072231	116073231	+	700.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	56957.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	2.85166500614226	3.20457974100725	2.83710691898906	3.01798338979334	2.92569194053939	3.03574083164233	0.043915373554128	0.950762408541388	0.988497463870961
Merged-chr15-6570629-4	chr15	6570138	6571138	+	834.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9209.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.22415289968293	6.93273050154634	7.30422975809775	7.40264471795507	7.46788173485318	7.56446306377361	0.475870493591653	0.0519744452887957	0.291111478495895
Merged-chr7-130839568-4	chr7	130839063	130840063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26161.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	3.82453616376971	3.72638265012591	3.47736790551751	3.60545436148746	3.3607942726631	3.30820569739113	-0.923944632554342	0.125549109298183	0.474177845108014
Merged-chr7-139401122-3	chr7	139400614	139401614	+	618.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	620.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	3.54027661733017	3.62466716123981	3.39031161184862	3.44850210653189	3.53609666728656	3.084510870556	-0.544379568765446	0.408651267471269	0.782226990150116
Merged-chr17-34297234-1	chr17	34296734	34297734	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-8633.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	5.82179850491199	5.72148663420732	5.49660699646085	6.16737808068683	6.67273503912606	6.24793873867673	1.19273818310087	0.000253430602245335	0.00608058060888981
Merged-chr14-26579520-4	chr14	26579035	26580035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-15.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	7.95485317481845	8.17286773217818	7.64673470905658	7.74443773299725	7.79928099418027	7.78485600242951	-0.249787290758538	0.300249267055249	0.697093697177186
Merged-chr16-16856913-4	chr16	16856408	16857408	+	901.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13A|LTR|ERVK	7077.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	5.81715569816082	5.9271896011332	6.24442914835988	6.16881702206102	6.37310377877526	6.37925096546017	0.532398866595795	0.0763602494989238	0.363863454375584
Merged-chr3-68557139-4	chr3	68556653	68557653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113421, intron 2 of 7)	intron (NM_001113421, intron 2 of 7)	-15215.0	NM_013928	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	3.63790137567654	3.69697989956889	3.76896041933513	3.76603525799176	3.69554371698928	3.78786289231651	0.161940604559449	0.76031010860458	0.940712904146702
Merged-chr17-10766926-2	chr17	10766426	10767426	+	710.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	73265.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	2.41557672934197	2.27239018367837	2.65223964304633	2.01958689007187	1.98804235444616	2.2288633493504	-3.19658052469372	0.00415222567261747	1
Merged-chr2-145863300-4	chr2	145862770	145863770	+	859.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-39971.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	4.54205310990178	4.60887340226938	4.48136644169001	4.29267607453349	4.14117894740422	4.46440667697026	-0.656834352499903	0.139690869306671	0.499415564718979
Merged-chr5-115011765-6	chr5	115011263	115012263	+	897.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029012, intron 1 of 10)	CpG	239.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	7.49949782127947	7.69177644888685	7.65658654368378	7.57939546191699	7.26048384136659	7.28405709557259	-0.342787592491684	0.152867699192224	0.521355567452332
Merged-chr14-63136213-2	chr14	63135713	63136713	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 4 of 9)	intron (NM_007798, intron 4 of 9)	13751.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.10977940443879	4.34663358558909	4.52568457289998	4.04140737272144	4.14759953736124	4.66389706328007	-0.0769904423877681	0.879397049805483	0.972083703102674
Merged-chr8-79028739-3	chr8	79028261	79029261	+	741.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	324.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	4.48181298714546	4.7155018413585	4.25630463042008	3.81172604293373	3.51877972462738	3.69559510530789	-2.58977362789866	2.67337746809466e-06	0.000128285116704279
Merged-chr5-32940880-4	chr5	32940385	32941385	+	963.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025426, intron 28 of 42)	intron (NM_001025426, intron 28 of 42)	77164.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	5.79265433594467	5.74386959030215	5.52062855773372	5.99412911266221	5.85311934478687	6.28824578879543	0.614127118796491	0.0581956547940337	0.311742707440574
Merged-chr10-17653544-2	chr10	17653044	17654044	+	587.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-69684.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.75095493973641	2.70880852571327	2.54839255142205	3.00529989325798	2.71581662364888	3.12071568410743	1.41257358333348	0.0714634721287082	0.350671261949964
Merged-chr2-18087822-4	chr2	18087325	18088325	+	938.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010804, intron 3 of 22)	RMER16_Mm|LTR|ERVK	23240.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	4.25805407661936	3.82720154210677	4.20768218826248	4.16774141695574	4.0673215190143	3.93963105995408	-0.126083584974855	0.805104141617182	0.953787743121181
Merged-chr5-32714057-4	chr5	32713609	32714609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	32233.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	7.22106023959814	7.43116011719159	6.97804110161401	7.68852885435298	8.02693832594907	7.33883023627399	0.722467232968708	0.0114165270921049	0.110424201741438
Merged-chr2-70982593-2	chr2	70982093	70983093	+	986.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 3 of 9)	ORR1C1|LTR|ERVL-MaLR	35781.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.17097295383423	3.40243641714716	3.07674989921662	3.36286710930258	3.23581987406442	3.38646926933163	0.38543840853587	0.547213788982674	0.859256588783723
Merged-chr4-7455381-3	chr4	7454858	7455858	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105330.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	3.85081515443841	3.78236928831673	3.78746841768087	4.20990753724818	4.06550123862469	4.10911609135377	0.96905962993262	0.0520856920301488	0.291592966591174
Merged-chr19-29369045-1	chr19	29368545	29369545	+	774.833313	f0_balb.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1607.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	6.53866551312432	6.73220685867917	6.64239578482055	7.08439602505412	7.2984579166182	7.0826365549544	0.805965290764592	0.00137544017759517	0.0231441104746894
Merged-chr12-69362591-2	chr12	69362091	69363091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5415.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.25829361462305	5.48851980657031	5.48678179752239	5.34480226186341	5.71792079247752	5.36955659527499	0.170625430130032	0.62797981447349	0.893474066598445
Merged-chr8-71372787-2	chr8	71372405	71373405	+	658.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_122030, intron 2 of 2)	intron (NR_122030, intron 2 of 2)	1607.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	2.14769007304213	2.1165932608451	2.42938075388781	2.19487110516478	1.93818570080876	2.38005000936319	-0.369312996917449	0.700031340055335	1
Merged-chr18-10533149-4	chr18	10532681	10533681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	77171.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	6.40875782904114	6.30354505385492	5.96417746567678	6.40742768871009	6.63098991179586	6.21436751033212	0.310361953595217	0.308045924958465	0.704017944516148
Merged-chr2-73526885-4	chr2	73526378	73527378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2609.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.50160789508099	5.48973307199131	5.51316541231662	5.26121785968954	5.54802663483915	5.65654910262914	-0.00946261967105989	0.977612739218566	0.994887548257726
Merged-chr5-31866769-1	chr5	31866269	31867269	+	559.0	f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	168719.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	3.07098212058607	3.56688896088143	3.37645574084288	3.53281676777293	3.54389452870899	3.90401994536933	1.11281768093321	0.0871283625579042	0.391287607497738
Merged-chr9-87172344-2	chr9	87171878	87172878	+	635.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	23150.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	5.58724320947427	5.58412374522937	5.25050310387935	5.1323364417688	5.0007377368758	5.14506603353587	-0.813348157056291	0.0221659844825591	0.17283298966089
Merged-chr7-90071649-4	chr7	90071151	90072151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42492.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.67226459978335	5.64010381199674	5.41088741413773	5.59772812391299	5.26798157873771	5.20987659378272	-0.409739674807713	0.240770522318705	0.63779309813394
Merged-chr13-42248863-4	chr13	42248352	42249352	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-52624.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	2.9954974178336	2.78966397295961	3.15099047797311	3.03338008964159	2.96318940836651	3.05195302996226	0.156174511634839	0.820746725233807	0.957821788404693
Merged-chr8-26981860-4	chr8	26981358	26982358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001101502)	TTS (NM_001101502)	4522.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	5.41780008390276	5.48796156725585	5.51698529746275	5.25670126441555	5.11700117494818	5.57901165308608	-0.306019509367731	0.38598311889805	0.766805542862881
Merged-chr18-80469276-2	chr18	80468765	80469765	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_026295, exon 1 of 13)	exon (NM_026295, exon 1 of 13)	402.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	8.34673110741276	8.23530301263013	7.78844671328451	8.08192669136812	8.04016204626025	7.89590803847406	-0.201565842494579	0.411875652919169	0.784115801315538
Merged-chr1-175880668-4	chr1	175880162	175881162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012012)	promoter-TSS (NM_012012)	-116.0	NM_012012	26909.0	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding	6.25325940486892	6.51231717798798	6.42516147349501	6.29041414994851	6.21423906553342	6.44852859674646	-0.144947266634038	0.603882816447917	0.882873834047832
Merged-chr2-181189150-3	chr2	181188648	181189648	+	898.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_151465)	TTS (NR_151465)	1901.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	5.09446744252913	4.75321991958389	5.12015028899843	5.39866256189763	5.52240374655469	5.11572425202797	0.766402719574437	0.0443156809122943	0.26503408160355
Merged-chr16-91463624-3	chr16	91463127	91464127	+	779.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1477.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	7.50409665064233	7.13744125342984	7.25629176165425	7.62888131105522	7.66873609244761	7.25353399541529	0.334308461660738	0.196499763438555	0.58433766899665
Merged-chr8-85080196-2	chr8	85079696	85080696	+	985.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001493)	promoter-TSS (NM_001001493)	550.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	4.77006680483642	4.87757236923045	4.99147785963235	4.73962997498496	4.79189483363131	4.80505850683012	-0.221510240332599	0.569185591532348	0.8688875602138
Merged-chr17-45574314-4	chr17	45573809	45574809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1048.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	7.64727141097624	7.64780896438117	7.63575641128586	7.38855450638865	7.76269299682137	7.63724591975551	-0.0503785609830987	0.829149918784386	0.959990063227229
Merged-chr7-68749391-4	chr7	68748911	68749911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025549)	promoter-TSS (NM_025549)	-173.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	6.31227021521283	6.52555483153896	6.54988451315684	6.49591622250386	6.52957242730561	6.5405793234379	0.0945643026844866	0.722534098969573	0.928821151735982
Merged-chr19-6974662-8	chr19	6974116	6975116	+	991.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008889)	promoter-TSS (NM_008889)	-432.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	4.87793234757555	5.01640989109511	5.21057906046231	4.74138217673067	4.52168026055676	5.24383218690642	-0.390152113651206	0.370899786830329	0.755116600398165
Merged-chr4-13152376-3	chr4	13151879	13152879	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	245542.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	3.06730691354812	2.90492094585485	2.77680673760601	2.91838143700784	2.79453624515613	2.97562822561074	-0.154831666365977	0.827688550052335	0.959499015069944
Merged-chr18-80690905-2	chr18	80690350	80691350	+	710.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	17323.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	7.38612948483949	7.25923026441224	6.58240163507137	6.86402755822795	6.95070604935651	6.50791934189698	-0.512762945475236	0.107043087556354	0.436631267679253
Merged-chr18-38923233-3	chr18	38922734	38923734	+	915.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-4535.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	3.95658279609815	3.71476172323745	3.78926524188802	3.27155754749526	3.16315007183057	3.43397655849554	-2.08693315128036	0.000717513931734409	0.0139232507536746
Merged-chr13-64378862-3	chr13	64378359	64379359	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8339.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	4.06082509443798	4.17129009342236	3.89969661545827	3.15926190383147	3.3130579899026	3.60456957776061	-2.53632433439145	6.83754939680202e-05	0.00204875336769572
Merged-chr2-27723011-2	chr2	27722511	27723511	+	640.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	12428.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	5.2493096096847	5.5582562966795	5.87253851866139	5.4841642223495	5.62268163063535	5.38108817518008	-0.126669611177596	0.726498811117633	0.929867107699856
Merged-chr8-41033727-1	chr8	41033227	41034227	+	769.0	f1_c57bl6.idr	intron (NM_001005863, intron 5 of 13)	Lx4A|LINE|L1	8204.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.12603319044848	3.25146762881475	3.22359964703488	3.7212437979862	3.60134219613633	3.88253374797997	2.05487061199915	0.000946369775317831	0.0172422895258695
Merged-chr8-35643941-4	chr8	35643441	35644441	+	978.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-54921.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.95822180986356	4.58205601054927	5.25577919367421	5.06816717080036	4.63904724616588	4.70351509638318	-0.295785977107725	0.505835076862174	0.838177729332582
Merged-chr18-35563299-3	chr18	35562785	35563785	+	718.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010771, intron 1 of 14)	intron (NM_010771, intron 1 of 14)	1127.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	6.80781485353415	7.094566584348	7.28351597776718	7.0474406357423	7.29083141633674	7.26313307891362	0.204778785165651	0.435702990916583	0.799285119894771
Merged-chr13-74317337-4	chr13	74316840	74317840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011051)	promoter-TSS (NM_011051)	-14.0	NM_001359996	18570.0	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	5.02534306509014	4.96149876991356	4.81083961672998	4.77044958106905	4.89564144357204	4.83818798791462	-0.230135779497369	0.549740438803194	0.86042385916162
Merged-chr9-44571133-4	chr9	44570634	44571634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33758.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	5.51214391829929	5.33052163691398	5.55673917439646	5.81631351244942	5.93351036172301	6.01418768019607	0.83920005283857	0.00799352393957959	0.0860432703621096
Merged-chr3-89772379-2	chr3	89771879	89772879	+	700.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_130957, intron 1 of 1)	intron (NR_130957, intron 1 of 1)	1021.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	5.51452146151482	5.63804292022506	5.03714383744826	5.35490660513444	5.32850358124207	5.17800601152424	-0.278917044095401	0.455699326271576	0.811093917311714
Merged-chr11-106676147-1	chr11	106675647	106676647	+	558.0	f1_balb.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39134.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	5.94389963725489	5.93292941847378	6.2332173654582	5.56386236483905	5.20724286469419	6.10095168107738	-0.668009776785247	0.0784756947621848	0.369927849275789
Merged-chr14-34769864-2	chr14	34769364	34770364	+	691.625	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50272.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	3.89826842730707	4.19401997442196	4.05478301911795	4.00237257284618	3.67344308065069	3.71373989112865	-0.773630186333972	0.146207543063803	0.510064920685029
Merged-chr9-65202117-3	chr9	65201601	65202601	+	928.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12589.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	7.35911123994675	7.48889218955238	6.841353421494	7.30043014623997	7.56433339773716	6.65693721140641	-0.0398564540948319	0.905112113076386	0.978232606263309
Merged-chr9-21718973-4	chr9	21718467	21719467	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4609.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	6.35410163219927	6.05745182755173	6.38243231926554	6.22833953426503	6.45915543883642	6.30886908251765	0.122160943918682	0.672126770137133	0.910735325716773
Merged-chr5-102012198-1	chr5	102011698	102012698	+	682.0	f1_c57bl6.idr	intron (NM_172882, intron 2 of 66)	CT-rich|Low_complexity|Low_complexity	57723.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.24238078282434	5.19710945397797	5.81431465185779	5.75253516808433	5.73724577275565	5.78038006259329	0.605670917276716	0.0913513715939669	0.402284462957968
Merged-chr4-147338648-2	chr4	147338148	147339148	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	ID_B1|SINE|B4	162782.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	3.66229255947214	3.68443943628513	3.68135330823845	3.45202190053934	3.46880929084467	3.69995239134021	-0.488280026087641	0.383143001338384	0.764540225313898
Merged-chr1-64876441-4	chr1	64875931	64876931	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	80393.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	6.48195417335892	6.93085702519074	6.59437746371666	6.62226685385427	6.67180700151921	6.31296169026752	-0.213351636954981	0.464548925321846	0.816459397744841
Merged-chr19-57611321-4	chr19	57610808	57611808	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_181415, exon 1 of 29)	5' UTR (NM_181415, exon 1 of 29)	274.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	6.77002092924094	6.66258873518141	6.68006334054229	6.58392005042946	5.94782874671403	6.35377994090244	-0.628708656015484	0.0378127253742268	0.240489280206273
Merged-chr13-62684832-4	chr13	62684341	62685341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60659.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	5.15470968826452	5.19280829116899	5.79271190067245	5.30663191347676	5.26912737128129	5.23859858230399	-0.251276900667847	0.514072439948819	0.842928757124913
Merged-chr2-167956822-2	chr2	167956322	167957322	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	24495.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.03612269380032	5.04867161429978	5.17057077838892	5.07390804350056	4.83601385821697	5.32479761858648	-0.00638959830788089	0.986725538997499	0.997073310870088
Merged-chr11-108222820-4	chr11	108222339	108223339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	121049.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	8.0333302352814	8.00167965201432	7.91842564331901	7.93892253321895	8.22628325251128	7.78328575641811	0.0252209407265639	0.913853938480938	0.980811835491594
Merged-chr17-35824554-4	chr17	35823985	35824985	+	911.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008027, intron 4 of 12)	intron (NM_008027, intron 4 of 12)	1128.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	3.97008102383493	3.57527431434475	4.09337022551042	3.78294684604242	3.81728299640886	3.88283696106968	-0.202569679985592	0.711848511618007	0.924889808252387
Merged-chr6-125345767-4	chr6	125345263	125346263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011324)	TTS (NM_011324)	-3960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	5.07960504323929	4.81960221020327	4.99880354157557	4.9443114393854	4.96186396249536	5.28704461583844	0.202945431531167	0.599061460844845	0.880902871165758
Merged-chr9-120002211-4	chr9	120001708	120002708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17466.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	7.1415336156592	7.28956354209686	7.1676371183713	7.0893203536924	7.0243074834038	6.82678551025243	-0.320195615405727	0.189239290683222	0.574868493270401
Merged-chr9-44066984-4	chr9	44066473	44067473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198092)	promoter-TSS (NM_198092)	-48.0	NM_198092	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	3.70711215978202	3.68277460870129	3.60010932113971	3.70384174931254	3.5775947677934	3.56067502522998	-0.176717660067461	0.747667850611136	0.936669539129704
Merged-chr2-128746714-4	chr2	128746213	128747213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47798.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	8.62342397895171	8.27359323522177	8.28920113812	8.21180464219132	8.34551322338648	8.23071121293949	-0.199928981548442	0.370275834327661	0.75468690157258
Merged-chr12-85543049-4	chr12	85542562	85543562	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-56043.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.29979360092508	4.16973714564146	4.93813976407713	4.413237228306	4.11547237799252	4.87550761491362	-0.0176397159760647	0.973921401779398	0.994173346573677
Merged-chr2-20899504-4	chr2	20898989	20899989	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68232.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	6.28431505190312	6.78524338200372	6.28032022604484	6.52506278108422	6.53238801775721	5.8283359993698	-0.215100015826319	0.537492057706935	0.854548286794532
Merged-chr9-123855914-2	chr9	123855414	123856414	+	711.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011798, exon 2 of 2)	exon (NM_011798, exon 2 of 2)	-4015.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	3.13138497358015	3.10826330098888	3.06240188434573	3.21619829136841	2.99002664600753	3.56850615475015	0.708556779306469	0.297178722497212	0.693830312086969
Merged-chr4-11128679-2	chr4	11128179	11129179	+	775.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4721.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	2.37697645643508	2.41320196557318	2.40716327273687	2.52131417518576	2.45451440890008	2.67041880694557	0.908261646416559	0.25694359979298	1
Merged-chr3-95656424-2	chr3	95655924	95656924	+	762.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2297.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.05519305096973	3.9544237286059	3.87877886614116	4.37654346987073	3.70751143448232	4.14705463800201	0.396579969223019	0.466937109270042	0.817714841691746
Merged-chr10-81303931-3	chr10	81303453	81304453	+	947.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10990.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	4.63439632207803	4.47394769332646	4.33159308165628	4.23169700784667	4.10495560339841	4.16394198086929	-0.871125622985929	0.0567997873955245	0.307240868754218
Merged-chr16-93888540-6	chr16	93888018	93889018	+	924.444458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028083, intron 5 of 13)	intron (NM_028083, intron 5 of 13)	4617.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	3.95248880702514	3.82187645097124	4.49391589635645	4.82857431278799	4.93876243147776	4.99811275931534	2.09268566126818	2.1547139635835e-05	0.000777154050636566
Merged-chr19-55586217-4	chr19	55585726	55586726	+	978.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360431, intron 8 of 8)	Tigger19a|DNA|TcMar-Tigger	115978.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.41173546149678	7.57116866559829	7.25015959509718	7.26805801702572	7.42815344394874	7.21051784395603	-0.166830182690734	0.49001366038126	0.829980359087456
Merged-chr7-44304967-3	chr7	44304480	44305480	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009131, exon 4 of 4)	exon (NM_009131, exon 4 of 4)	1979.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	7.08338589559621	7.0432150504377	7.09840741921769	7.43334909874315	7.63141926457813	7.36987696069738	0.618457961066476	0.00848209816476631	0.0897772093569622
Merged-chr17-33911791-2	chr17	33911291	33912291	+	811.666626	f1_balb.idr|f1_c57bl6.idr	exon (NM_007829, exon 3 of 8)	exon (NM_007829, exon 3 of 8)	2190.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	3.47812960716494	3.54378575197882	3.94950068278463	3.64608619047501	3.82126130500307	4.18760923952664	0.748312703964977	0.202098268532082	0.591773948258361
Merged-chr2-73487082-4	chr2	73486577	73487577	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1324.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.47275162743821	7.38705216131162	7.08329078152295	7.14236556684231	7.39560325460647	7.14114255676846	-0.140381090170893	0.580582740717196	0.872888274963799
Merged-chr5-122393505-2	chr5	122393005	122394005	+	734.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	1627.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	4.22918465951042	4.33171187427178	4.43136965966334	4.10151568336422	4.11061822587573	4.85636906418694	0.170605788713988	0.74149995260715	0.934868190792048
Merged-chr14-66235773-4	chr14	66235301	66236301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-21977.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	6.72052802160056	6.79419753884034	6.7425390930094	6.82536397795915	7.1759843456378	6.63558329877739	0.247370771377426	0.369947942180865	0.754416738955496
Merged-chr4-149708707-1	chr4	149708207	149709207	+	584.0	f1_balb.idr	Intergenic	Intergenic	-7078.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	4.3920654904041	4.62875095603366	4.79808564115724	4.86358638413422	4.54179380216853	4.50594131582355	0.0949363414071839	0.82863141045976	0.9598352930318
Merged-chr5-103692279-4	chr5	103691804	103692804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-36572.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	6.58415101984462	6.55590158586427	6.60036138819906	6.71843080154143	7.00888230172003	6.74115233042088	0.407282763200517	0.118339123508643	0.45963505526337
Merged-chr8-124219311-4	chr8	124218821	124219821	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4|LINE|L1	-12073.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.56624271890008	4.75530446610456	4.86942274329888	4.95180575763749	4.66257615457117	4.62460256507857	0.060972640202325	0.883244529113677	0.973347392063704
Merged-chr3-127513925-1	chr3	127513425	127514425	+	761.0	f1_c57bl6.idr	Intergenic	Intergenic	-14810.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.51460963715318	2.44390510852494	2.37044748235347	2.55203380700026	2.48460275013893	2.70118649496027	0.780526393019412	0.330381165506863	1
Merged-chr10-13946706-4	chr10	13946206	13947206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19369.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.7159935925398	6.41377393136243	6.36938388120819	6.89566927103935	6.51471554631672	6.59546740265607	0.260336749119494	0.364114575865805	0.749582018361453
Merged-chr4-46196253-4	chr4	46195731	46196731	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011728)	promoter-TSS (NM_011728)	80.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	5.57523649710687	5.67990787478573	5.84054867970467	5.79876226901747	5.29348933881891	5.9468198452569	-0.00189755046218608	0.995774470187723	0.998961028701257
Merged-chr7-127801275-2	chr7	127800775	127801775	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040684, intron 2 of 6)	intron (NM_001040684, intron 2 of 6)	666.0	NM_001040684	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	4.60699727513718	4.43971771312586	4.67417067110967	4.71049285056769	4.38516113273326	4.77692891271621	0.127543601827234	0.7689087428333	0.942983923980385
Merged-chr2-132005972-2	chr2	132005472	132006472	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	24016.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	6.03652706285786	6.16160899817834	6.12093105708659	5.58612348577212	5.72618582799313	5.36517085614866	-0.933862541871419	0.00336448683502728	0.0458037010093177
Merged-chr16-95991675-2	chr16	95991175	95992175	+	930.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	-715.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	5.62289455696435	6.03349530910012	5.8787644363117	5.55823475454758	5.98416028748573	5.53797859758489	-0.236803934891582	0.495431400111875	0.832500902975543
Merged-chr14-55815075-2	chr14	55814575	55815575	+	915.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR17|LTR|ERVK	-9720.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	4.98201036407132	5.07023049065972	4.90735716520794	4.72358447543879	4.69557717892816	4.42794797843775	-0.816020109080205	0.0444631809817609	0.265706145010799
Merged-chr14-66224415-2	chr14	66223915	66224915	+	654.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	ID_B1|SINE|B4	-10591.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	7.82089555960846	7.8417847936194	7.37056371855382	7.66251610591434	7.66454294848541	7.67308967467487	-0.0560857441857502	0.818105361867388	0.956842917576288
Merged-chr5-100608086-4	chr5	100607583	100608583	+	962.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35878.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.05478829477917	4.93524896173867	4.92688666691514	5.60598068235601	5.48284660273826	5.31119389383358	1.01487073382221	0.00437605666774169	0.0556848024483026
Merged-chr19-12832348-1	chr19	12831848	12832848	+	652.0	f1_balb.idr	intron (NM_134152, intron 7 of 8)	intron (NM_134152, intron 7 of 8)	-29429.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	4.82439893114432	5.39221032042455	5.29926667481008	4.74331017093351	4.88535892262937	5.11460157314335	-0.587397576482878	0.152616692315542	0.520882221020083
Merged-chr8-70657913-2	chr8	70657425	70658425	+	583.75	f0_c57.idr|f1_c57bl6.idr	intron (NM_023217, intron 1 of 4)	intron (NM_023217, intron 1 of 4)	1813.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	3.29646538088699	3.14707012053587	3.61898256817744	3.50115536574484	3.38427380002468	3.78371438288598	0.739921502587927	0.24118996473594	0.63836549989656
Merged-chr15-25622396-4	chr15	25621883	25622883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-167.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.35564211587891	6.28738134933256	6.11049268084236	6.14446126154833	6.16375298826538	6.27601792107347	-0.119067756566941	0.671847700990431	0.910694246658612
Merged-chr2-132253823-2	chr2	132253323	132254323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-643.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	7.01962988189416	6.95820379650568	6.63343735985407	6.96712903166683	6.92261231469618	6.46975602515454	-0.113388025086316	0.692139191585142	0.918590542007936
Merged-chr10-51526332-4	chr10	51525837	51526837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS2|LTR|ERV1	35439.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	8.49550702922683	8.55819023965171	8.24429741482339	8.46190212637536	8.67819559277691	8.26055097287071	0.0560057201840815	0.808721367287705	0.954721853010197
Merged-chr13-67421371-4	chr13	67420883	67421883	+	911.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177811)	promoter-TSS (NM_177811)	35.0	NM_177811	328274.0	Mm.222470	NM_177811	ENSMUSG00000055560	Zfp459	9930025G17Rik|Rslcan-14	zinc finger protein 459	protein-coding	5.17935936385175	5.31232825685264	5.27350352447577	4.05640687862145	3.79701734104634	4.19027387284195	-3.32367262736328	7.70753552978117e-12	1.27500718958654e-09
Merged-chr17-84878049-4	chr17	84877563	84878563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78678.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	4.21655672803458	4.4910257222199	4.11498280432657	4.25177842630307	3.94190102566389	4.23099490180266	-0.421266982723059	0.392208455299631	0.77096341007729
Merged-chr6-47594330-4	chr6	47593803	47594803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007971, intron 1 of 19)	CpG	727.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	7.66501774011393	7.80074062550717	7.36059254094496	7.63683907364809	7.81787555452134	7.57716396867771	0.0809039201113953	0.740948014141344	0.934712654423072
Merged-chr16-4624924-4	chr16	4624362	4625362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	84.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	7.28594891675095	7.39816581163296	7.32492780941102	7.42188867206617	7.61931672396673	7.20460822297695	0.145435056765793	0.550815229880184	0.86080292597632
Merged-chr13-56152036-3	chr13	56151536	56152536	+	858.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16486.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	2.6583883820528	2.58843384731203	2.94652738618	3.02852969034346	2.95051750618599	3.13324897926701	1.55187343735693	0.0382084679041223	0.241847346979408
Merged-chr14-20661859-2	chr14	20661359	20662359	+	800.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	2715.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	4.68052691003438	4.88695470912181	4.901334303239	4.37850297039998	4.04249430066566	4.51523094053088	-1.27376923316583	0.00485922799934717	0.060042566582964
Merged-chr5-64811744-4	chr5	64811281	64812281	+	782.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8258.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.94684139447314	7.09635530491782	7.15295100899634	6.96321670725857	7.27188589696974	7.05958952792469	0.0699459180837777	0.77991580499814	0.945949149660645
Merged-chr17-17869195-1	chr17	17868695	17869695	+	698.0	f1_c57bl6.idr	Intergenic	Intergenic	-14007.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	4.82004343266851	4.62018619288143	4.65590247984415	4.7008735716182	4.75629453288955	5.01446571805707	0.272098787478101	0.503164026978184	0.836843341131336
Merged-chr13-90929522-2	chr13	90929022	90930022	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	6400.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	2.23455074062454	2.3411275619951	2.15315882459472	2.4137776459911	2.37752773347803	2.55919925263822	1.3192650680383	0.133281457830368	1
Merged-chr3-95894703-2	chr3	95894203	95895203	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146104, intron 1 of 5)	intron (NM_146104, intron 1 of 5)	782.0	NM_146134	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	5.08891327667891	5.37707198140804	5.13726473164381	5.32546376136834	5.60977434125882	5.39764164697904	0.481470345180428	0.177254970151547	0.558210262522516
Merged-chr6-40581453-2	chr6	40580953	40581953	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038604, intron 5 of 6)	RSINE1|SINE|B4	4352.0	NM_021364	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	3.20832970051421	2.7706566792721	2.75840818078844	2.90346886670359	2.66199661400197	3.02013125090711	-0.314098507715713	0.683121528816949	0.91523316791368
Merged-chr5-123930706-4	chr5	123930272	123931272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001134767)	promoter-TSS (NM_001134767)	83.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	7.81729372291468	8.05904234692373	7.61359270775993	7.90058432075108	7.89712118359377	7.38193412707238	-0.131263788823027	0.622449777233057	0.891161426909556
Merged-chr1-53816118-1	chr1	53815618	53816618	+	550.0	f0_balb.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-30903.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	5.85117828658921	5.66607264961442	6.00410945253526	5.8487658806556	5.76365830622851	5.67413245472812	-0.128231710383137	0.683169070992196	0.91523316791368
Merged-chr4-45514223-4	chr4	45513815	45514815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	16513.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.94685443225329	6.62890694979378	6.69219017570579	6.69835870109439	6.60437748868732	6.30972088232779	-0.331244760343073	0.236382315230982	0.632720263621021
Merged-chr7-6172251-4	chr7	6171778	6172778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-235.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	6.77920218315957	6.80305973133888	6.48179872016224	7.0150970401843	6.96358242241445	6.5417252095706	0.252203788585535	0.371349909506378	0.755539117055204
Merged-chr4-138326297-4	chr4	138325808	138326808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026880)	promoter-TSS (NM_026880)	-12.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	7.36337307946013	7.6505188472276	7.47829479808523	7.74346121912474	7.53239606918032	7.51484927603243	0.142334060135254	0.546979486724336	0.859168905101902
Merged-chr13-37826991-8	chr13	37826419	37827419	+	878.745544	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	7.0	NR_033615	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.57176468312976	6.66681946462974	6.94066819070219	6.59282286142608	6.62038128858715	6.2474863916698	-0.349003615545973	0.220998655733762	0.61561513090473
Merged-chr12-80793592-2	chr12	80793090	80794090	+	607.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	3058.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	5.30228071992961	5.15068485098062	5.30294666937825	5.57663496450781	5.5039439327362	5.09253092326128	0.33301639139345	0.357054283682225	0.743726917541594
Merged-chr5-139735774-4	chr5	139735281	139736281	+	813.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	552.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	6.16363476167918	5.93004807332952	5.86755319867651	6.69490787334304	6.90278029221441	6.17753984257041	1.05246157065932	0.00113318546924803	0.0198463684540497
Merged-chr8-84979383-2	chr8	84978883	84979883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008416)	promoter-TSS (NM_008416)	-635.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.80381205914067	8.79893844903484	8.50462394339034	8.60890470181736	8.87565855659552	8.44063415915984	-0.0735716699939973	0.750510710086071	0.937564211523741
Merged-chr11-59525442-4	chr11	59524940	59525940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16129.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	5.16874944524699	4.94496729344496	5.11907892813469	5.01714163099363	5.30343379342766	5.08076285861525	0.145858956143834	0.694965790448534	0.919230570201314
Merged-chr1-132477065-4	chr1	132476518	132477518	+	931.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	-349.0	NM_001357486	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	6.96169920424477	7.25964143961491	6.94903590007463	7.13265578152775	7.42310891347799	7.03525359007795	0.219961143047079	0.404812168978837	0.779791650050306
Merged-chr3-15332307-3	chr3	15331815	15332815	+	913.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001076679)	promoter-TSS (NM_001076679)	-13.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.35689956645337	4.64091397750643	4.65876167094515	4.18374059771414	4.2276679152033	4.36500134863335	-0.788065388112419	0.0808935191085067	0.376327179804351
Merged-chr3-152395944-4	chr3	152395471	152396471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-32.0	NM_001080755	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	7.64596467946125	7.22921168778263	7.14560647500586	7.47244374054686	6.84823177970286	7.04517500530704	-0.319956994409664	0.281156620221788	0.679316418491107
Merged-chr5-147063514-3	chr5	147063026	147064026	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	13046.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	7.72597246058435	8.08254194054766	7.5284256956275	4.98571825298358	5.36572754255259	5.3304098327369	-4.3457047751685	5.31202769583494e-33	6.80432179724332e-29
Merged-chr9-44378631-2	chr9	44378131	44379131	+	708.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-859.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	6.92857537384422	7.04667736922557	6.61513350513494	6.80125765443972	7.01414855572125	6.54750030327287	-0.110968987877354	0.696125548484382	0.919328550269633
Merged-chr10-96364011-4	chr10	96363506	96364506	+	768.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137799.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.16307687197612	2.90013197113522	3.12232446834473	2.98126569120749	3.13318913629189	3.30452032304109	0.338005686812654	0.615913311890305	0.888134787410948
Merged-chr3-126625308-4	chr3	126624829	126625829	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28378.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.26634325560194	7.57397878240001	7.06171460327726	7.09928220618304	7.5610824024052	7.14620838308809	-0.0458437850320806	0.870488920181099	0.970084781962666
Merged-chr9-105395403-4	chr9	105394897	105395897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172461)	promoter-TSS (NM_172461)	35.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	7.58416782954975	8.00291765636811	7.35934441527894	7.53251112273072	7.89029594000401	7.2728080909031	-0.122975491344723	0.676026701645749	0.912421384593547
Merged-chr5-76183885-4	chr5	76183392	76184392	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	12.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	6.9405178609366	6.84114460866159	7.01120992679499	7.01031442887924	6.67256977129748	6.68826329783411	-0.198532893284381	0.447501255245681	0.806525828419742
Merged-chr15-63617562-3	chr15	63617106	63618106	+	789.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-137998.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.98955114213933	5.8633888532418	5.72228975625781	5.76234668468498	5.53870891935336	5.61984362466327	-0.418026190205049	0.185574652504113	0.569789508692334
Merged-chr7-30416422-2	chr7	30415953	30416953	+	855.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011662, intron 4 of 4)	intron (NM_011662, intron 4 of 4)	2665.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	5.00876205486171	4.83227461209605	5.2420031013226	5.82506320960374	5.55648432492857	5.89177834488088	1.43784933384893	6.44260551610253e-05	0.00195576913456352
Merged-chr2-102863735-3	chr2	102863281	102864281	+	608.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 2 of 13)	intron (NM_001039150, intron 2 of 13)	37884.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.74648656207086	3.99863263076112	4.12274798208202	3.69138117909274	3.69653824965113	4.10283660809856	-0.388074750246803	0.47788235271633	0.823464515587694
Merged-chr10-95356648-2	chr10	95356148	95357148	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20372.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	3.357358800172	2.92646839464079	3.17584787716718	3.64673887723186	3.50273865125699	3.83954557745348	1.94317794526148	0.00426628444674723	0.0546136917299913
Merged-chr7-135705314-4	chr7	135704805	135705805	+	829.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 7 of 13)	intron (NM_001081117, intron 7 of 13)	11074.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	6.03805098936248	5.73212805340379	5.84908329064516	5.92642028237597	6.20830318579576	6.3373185277587	0.490455941733386	0.115952672193952	0.454674361353175
Merged-chr11-97630729-2	chr11	97630229	97631229	+	616.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1013.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	2.53832571567646	2.62962016532795	2.66928153759493	2.69327617691074	2.49264462712307	2.74257054950125	0.17121467577275	0.822918710337831	1
Merged-chr8-35394296-4	chr8	35393787	35394787	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18546.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.16796833571724	5.92556631783054	5.8669170363271	6.1136126122165	5.97248854223021	6.25841880736247	0.192545701306868	0.524976769454461	0.84884700169621
Merged-chr19-47538988-4	chr19	47538492	47539492	+	937.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER67A|LTR|ERV1	-1873.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	2.96510835437522	2.61784839432173	3.03103100369918	2.88229632788437	2.90245889291379	3.10273692545272	0.391198431165565	0.596372364600965	0.879911021114935
Merged-chr8-83200368-3	chr8	83199838	83200838	+	827.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	34986.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	5.90818366890546	6.02232690483521	5.80089903791164	6.96829256912985	7.05582536073264	6.26277679119629	1.46840376992435	7.38842462859808e-06	0.000309710849620347
Merged-chr4-63562394-4	chr4	63561894	63562894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	2167.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	6.46262838918992	6.30613888111631	6.2915565238315	6.69855766247995	6.48688930320721	6.43015239069123	0.30295294728314	0.267467573620642	0.664718552785949
Merged-chr4-55534117-3	chr4	55533590	55534590	+	901.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1615.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.81068204904975	4.48274925895464	4.40693579974592	4.71914288127412	4.64179307769847	4.38206342919561	0.022032475221608	0.960573353937262	0.990386809359123
Merged-chr9-104277736-3	chr9	104277233	104278233	+	838.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14803.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	3.00539010182478	2.92597455482691	2.95656504752251	3.09216948934012	2.81485862944438	3.02950169565003	0.0789764831317812	0.908551065329081	0.979266532095756
Merged-chr7-101544971-1	chr7	101544471	101545471	+	547.0	f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	10831.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	2.67751585767766	2.60309855743534	2.61230451582989	2.7656112058898	2.58689061519154	3.04423807786213	0.919041118263832	0.233194954719845	0.629641306045157
Merged-chr17-35868365-4	chr17	35867851	35868851	+	902.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1736.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	5.46860293037815	5.49283326442923	6.15128262292686	5.85913994878852	5.99683174310781	6.40778757737736	0.650476557135611	0.0802280351874003	0.374769895950677
Merged-chr2-91272996-4	chr2	91272476	91273476	+	990.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001311144)	TTS (NM_001311144)	7861.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	4.40122550458555	4.33744139219347	4.34843779220657	4.80612754175197	5.09319934984161	4.37062519079372	1.06405354998777	0.0208268766757486	0.16584962718305
Merged-chr13-55070187-2	chr13	55069687	55070687	+	796.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293660, intron 4 of 12)	RSINE1|SINE|B4	24219.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	3.34770963744505	3.29063110943147	3.46502339592756	3.41553285996799	3.24821664831211	3.58666413283768	0.193955890324012	0.748749183688004	0.937087780077821
Merged-chr3-9913473-4	chr3	9912975	9913975	+	723.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79796.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.36509773668465	3.48225424265499	3.48156233417778	3.39328141417398	3.38122310902421	3.38722345090671	-0.213500804904477	0.715230109047181	0.926342391059193
Merged-chr16-22856919-2	chr16	22856419	22857419	+	660.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	750.0	NM_001081368	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	6.56780454122557	7.15341811191586	6.88364505278142	6.70551785810851	6.90561798038822	6.59386111608496	-0.224727926984382	0.440342927619937	0.801751735698024
Merged-chr7-6362768-4	chr7	6362230	6363230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-578.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	4.65030551822234	4.63134836255328	4.99397129427162	4.81479023850487	4.81749148732723	4.77518954197542	0.109339305691149	0.787193679051932	0.948718549121005
Merged-chr9-15126184-3	chr9	15125682	15126682	+	937.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx6|LINE|L1	-14074.0	NM_001164797	244698.0	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	2.41837564195489	2.46118510218757	2.92199898665786	2.56413429480806	2.41839516170934	2.70796588317434	-0.27782617168839	0.738108265382366	0.933914184307464
Merged-chr13-42061055-2	chr13	42060554	42061554	+	682.5	f0_balb.idr|f0_c57.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	9033.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	3.07729748462793	3.24953238622364	3.13541554798439	3.4422190470846	3.03016721791457	3.2086412059297	0.32887900109564	0.618254920648594	0.88923037124608
Merged-chr12-80055149-2	chr12	80054649	80055649	+	662.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57864.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.68916001702719	4.42569397042326	4.45319038655391	4.66489050424634	4.28221575737201	4.13872754746359	-0.364341573283398	0.439827802768881	0.801408375858453
Merged-chr7-110242185-2	chr7	110241690	110242690	+	634.5	f0_balb.idr|f0_c57.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	20487.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	3.49710095115551	3.38431366185823	3.26659780338627	3.2110427651307	3.36690752087797	2.95778437901639	-0.766081333906223	0.26467034548729	0.662615540597738
Merged-chr7-128236033-2	chr7	128235533	128236533	+	849.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-1324.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	2.84712409303132	2.96355425546964	3.11332754554731	3.05079314708004	3.13659708414817	3.00953293605139	0.441056296228951	0.514019520393605	0.842918670363435
Merged-chr19-40678683-4	chr19	40678172	40679172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	18902.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	8.16105961471259	8.22609254776448	8.00204504490053	8.01408400249333	8.44685245856048	7.65191945274985	-0.0630741267927326	0.818004155141768	0.956835450074313
Merged-chr5-64269689-4	chr5	64269197	64270197	+	984.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	39340.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.86277811297468	6.05759815782394	5.89539858096113	5.81472043959765	6.11961426959241	5.66768546169411	-0.0832689978945967	0.795108699990324	0.950988942533787
Merged-chr3-27200861-3	chr3	27200344	27201344	+	808.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	17840.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.63938617797647	4.75929168830419	4.76818443193646	4.60535985130126	4.65132903724103	4.71928444311064	-0.152406887191127	0.70444562754206	0.922410722571361
Merged-chr4-147422184-2	chr4	147421684	147422684	+	608.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-131093.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.75151545034685	3.93470023783364	3.70618778953806	3.70837902924251	3.83846847623869	4.20217900054451	0.371083296347089	0.497793634465114	0.833791434757709
Merged-chr6-128844738-2	chr6	128844238	128845238	+	861.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18423.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	3.09895695912102	2.98860330713343	3.02494346103991	2.99118287768045	2.95567774453349	3.26648080839813	0.146103854210985	0.827763631883875	0.959510695872191
Merged-chr10-118091592-2	chr10	118091092	118092092	+	844.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50195.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.82726117013384	2.97194497069366	2.98096356146008	3.58531150032753	3.24420636149137	3.35626664482802	2.13458760170274	0.00216782137746651	0.0328142770922746
Merged-chr12-84038835-2	chr12	84038335	84039335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_134247, exon 1 of 3)	exon (NM_134247, exon 1 of 3)	456.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	5.98262440053752	5.64242093864477	5.20440881957295	5.55096200817162	5.50208564459401	5.19741498011844	-0.427675736429772	0.268261406416191	0.665320271388328
Merged-chr4-132491451-2	chr4	132490951	132491951	+	886.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19005.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	6.56210701688048	6.58721560989733	6.91251410961126	6.59597796576093	6.82170480242221	6.72497174372518	0.0523656894009854	0.84628392090241	0.963987423586105
Merged-chr14-87417730-3	chr14	87417263	87418263	+	834.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	1180.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	6.11420444560314	6.4389844691794	6.46136132521153	6.14560008828524	5.8728136766794	5.92679481332186	-0.605455645399098	0.0447577002515561	0.266751300397805
Merged-chr7-45562375-3	chr7	45561874	45562874	+	879.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7446.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	2.63753388927847	2.59440218516914	3.19061787107619	2.58132793859043	2.41371372502099	2.5769629801641	-1.69547921952273	0.0440221485802506	0.263942566584918
Merged-chr15-90679423-4	chr15	90678946	90679946	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-58.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	6.86165965418735	6.78796839395069	6.29952974771083	6.43393733358163	6.24840670392371	5.8782703066314	-0.753686675157504	0.0192913534546329	0.157634777398909
Merged-chr18-66474764-2	chr18	66474264	66475264	+	837.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16160.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	4.63518993673471	4.23023484404322	4.7439555116875	4.8362828679797	4.57109772415325	4.88088683991654	0.512936225702142	0.250710066986447	0.648153521953385
Merged-chr7-63937788-4	chr7	63937288	63938288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	CpG	1127.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	8.78342810740629	8.56714608134965	8.38697247811791	8.60717240512458	8.56818979488402	8.43650317449069	-0.0731321227676812	0.738880624528881	0.934106252288505
Merged-chr3-139025266-4	chr3	139024774	139025774	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	49927.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.73423059577687	5.09972696977034	5.00185421173814	4.63816440679221	5.05339992647937	4.88804618527272	-0.166728183351093	0.684896115043712	0.916042498883771
Merged-chr11-69881019-4	chr11	69880519	69881519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153143)	promoter-TSS (NM_153143)	-34.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	6.19480320945411	6.13640624581959	6.32274212458706	6.18077408714689	5.93780410895891	5.93368343677965	-0.325975891752833	0.2637341322067	0.661705152353609
Merged-chr10-77519347-4	chr10	77518852	77519852	+	894.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3539.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	3.5357366554706	3.50666216371998	4.15943170580669	3.82924769358748	3.48724107127452	4.05901531753599	0.140559589696154	0.821435374987133	0.958007382080696
Merged-chr2-127248603-3	chr2	127248134	127249134	+	940.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	659.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	6.47346635992167	6.32415210010413	6.30227243603635	6.63499317548602	6.30915171178682	6.21654068804601	0.051778733333211	0.857081600948817	0.966681760410265
Merged-chr2-71042058-4	chr2	71041537	71042537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145524, intron 1 of 9)	Lx8|LINE|L1	13569.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	7.42317061867927	7.00661474891247	6.31914867026929	7.01606008969377	7.1511981925016	6.33544899131746	-0.174756291453431	0.775771683458543	0.9447881648961
Merged-chr18-55125091-3	chr18	55124586	55125586	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-132495.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.92819076731176	2.56928769710388	2.93275338122521	2.79345227430275	2.69762679921374	3.27770188431152	0.589261552087168	0.455956394177497	0.811256460820279
Merged-chr9-59734431-2	chr9	59733931	59734931	+	636.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	16218.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	7.91425259541805	7.99469264577378	7.74532602560502	7.76219310679099	8.20843958559113	7.30953420293892	-0.0940775507773376	0.747596800892133	0.936653971666454
Merged-chr11-107132175-4	chr11	107131638	107132638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176850)	promoter-TSS (NM_176850)	-216.0	NM_001359590	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	6.76772258929525	6.39150986573439	6.39102146827719	6.85650504659931	6.17013293868348	6.67831148362441	0.0989628984658711	0.758695652864996	0.940287421764314
Merged-chr13-52625123-3	chr13	52624688	52625688	+	812.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	28306.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.64298921186306	4.00334705984345	4.06341240605941	3.67498980851119	3.70346904906368	4.13046232224266	-0.211218968062004	0.706947430265633	0.923161381966479
Merged-chr4-46453323-2	chr4	46452823	46453823	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_130889, intron 1 of 6)	PB1D10|SINE|Alu	2397.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	4.78112473984229	5.14760351771019	5.13133976398059	5.06741600608813	5.12625647173411	5.16254118571876	0.190957669049769	0.613503131935408	0.887273066396938
Merged-chr3-51208902-4	chr3	51208400	51209400	+	893.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_B|LTR|ERVK	-15547.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.84574747596677	3.89050259754065	3.75175496337318	3.51839870356639	3.43437491395674	3.77072180260664	-0.897453936292915	0.107709914837443	0.438421801122875
Merged-chr19-10856829-2	chr19	10856329	10857329	+	546.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_133804)	TTS (NM_133804)	12950.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	3.34946273316163	3.20842259458788	3.61892681941769	3.20630578900912	3.19142345512175	3.0882838531618	-0.93747618973368	0.148712299035174	0.514513637343814
Merged-chr5-121848943-4	chr5	121848448	121849448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-49.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	6.23134340751533	5.95002473190377	6.60690385849621	6.38635117656041	6.04084790414472	6.05043731769864	-0.184326457006521	0.575230888332628	0.870967954417344
Merged-chr19-46046635-1	chr19	46046135	46047135	+	698.0	f1_c57bl6.idr	Intergenic	Intergenic	-1324.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	3.30359501377986	3.31374924744167	3.89544965948961	3.61953201462089	3.27460090384649	3.68494540099748	0.0249335303587975	0.969301926302006	0.993088403419779
Merged-chr3-36533516-3	chr3	36533010	36534010	+	881.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12065.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	4.66618167297269	4.80824584702749	4.91168569474434	4.75489884017391	4.96055365970031	4.75287298727724	0.094596972475263	0.812214177126075	0.955516368820518
Merged-chr12-55491939-4	chr12	55491461	55492461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010907, intron 1 of 5)	intron (NM_010907, intron 1 of 5)	686.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.56286692517931	8.16181239753571	8.067179756848	8.37102714627122	8.5800257819124	8.16583293706909	0.141054748009352	0.574269092333993	0.870582911329883
Merged-chr1-88701215-4	chr1	88700726	88701726	+	940.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177305, exon 1 of 1)	exon (NM_177305, exon 1 of 1)	965.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	7.74655360729994	7.95611950920392	7.64533013693589	7.9697524470846	8.08891992738871	8.017183718168	0.331227776734889	0.137870002963745	0.496296223517512
Merged-chr2-172440024-2	chr2	172439524	172440524	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-554.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	7.27992987280497	7.39659396120466	7.50353113065175	6.66934565744342	6.86665688056276	6.80867462669402	-0.917878064201116	0.000182813535298329	0.00465139868605554
Merged-chr15-51803458-4	chr15	51802986	51803986	+	882.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	61975.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	2.99236323630704	3.18407025698453	3.29027167985523	2.98665546642383	3.2060668534027	3.36051261888735	0.137660523147894	0.836068527721551	0.961926836287561
Merged-chr4-136464398-2	chr4	136463898	136464898	+	598.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5363.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	4.12387133627973	3.83323413621167	4.19968281863287	4.288359113798	4.3017427659566	4.02908316606661	0.462364854975302	0.352197406921046	0.739888459678721
Merged-chr14-59260241-4	chr14	59259711	59260711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164329)	promoter-TSS (NM_001164329)	5.0	NM_001164329	628693.0	Mm.479519	NM_001164329	ENSMUSG00000090881	Gm6904	EG628693	predicted gene 6904	protein-coding	5.88242262746114	5.73770781125118	6.23338733490516	6.58420848145406	6.27447358073664	6.31301998343359	0.74904354054115	0.0158665384223267	0.138214293241725
Merged-chr16-65561629-2	chr16	65561129	65562129	+	804.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026879, intron 1 of 5)	intron (NM_026879, intron 1 of 5)	1068.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	3.7621816486236	3.72941467670891	3.5044777879148	3.59422345872507	3.52054317821659	3.40035035835719	-0.583703532316598	0.310521677189647	0.705856787750202
Merged-chr10-14053234-4	chr10	14052746	14053746	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	86867.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	3.81779760502525	3.83204271791857	3.6954405813439	3.79382797903011	3.74157221108014	3.71235509363645	-0.121342681700492	0.817939870267632	0.956835450074313
Merged-chr8-40511805-4	chr8	40511359	40512359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	76.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	9.35582210531034	9.60868480374416	8.9085660505794	9.10789298343451	9.14233111041654	8.78636540536983	-0.412174594647783	0.107227666545802	0.437062784262914
Merged-chr7-133186477-3	chr7	133185986	133186986	+	695.883362	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	58235.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	2.2645334027529	2.32345943018474	2.4659393233725	2.13129848038533	2.0245981617606	2.28786249545833	-1.51119802652852	0.101912520043974	1
Merged-chr8-61913088-2	chr8	61912588	61913588	+	941.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-10394.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.57208365613899	4.29367076444714	4.22418130135401	4.48565534223	4.44280663140744	4.63939735149839	0.353144824238267	0.431959176324014	0.797162418904554
Merged-chr9-57646825-4	chr9	57646333	57647333	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304761, intron 2 of 14)	MIR|SINE|MIR	-1180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	7.19099232422742	7.14086824875602	7.21443112963649	7.3150854853883	7.43019213565172	7.43689455552151	0.31949612971699	0.16162147190001	0.534698399024134
Merged-chr7-29263824-2	chr7	29263324	29264324	+	995.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	-15357.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	2.30573547876961	2.48709920410336	2.41777975863726	2.62284424225772	2.34829580747372	2.74335194627925	1.02231342195029	0.222439306923269	1
Merged-chr10-25318575-4	chr10	25318050	25319050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19387.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.67748577582337	6.99073475490387	6.622804317538	6.41246659778559	6.72434695356615	6.61417242314479	-0.295173468273826	0.289101634568661	0.686633011876864
Merged-chr6-42421694-4	chr6	42421206	42422206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12829.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	5.85747599530215	5.5550045092003	5.11054086371257	5.2841758221506	5.38815210295631	5.24892753989793	-0.471005809582358	0.215963803761437	0.609335600128232
Merged-chr13-83524757-2	chr13	83524255	83525255	+	573.0	f0_balb.idr|f1_balb.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	12.0	NM_001347580	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	3.63851293075742	3.36651851534945	3.38028723479806	2.97401155962285	3.12211377983944	3.22313183409433	-1.51597026801735	0.0213318000858284	0.168535232395057
Merged-chr5-105620673-4	chr5	105620181	105621181	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79288.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.43146167882207	4.00925558870184	4.31957634672238	4.10657436334379	4.09367123954921	4.114948149694	-0.443784477449293	0.36153570044714	0.747413912465046
Merged-chr14-13961149-4	chr14	13960644	13961644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359900, intron 1 of 8)	CpG	169.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	6.52129176159733	6.13191064981292	6.04459890726221	6.53931159813951	6.15260709237652	5.98448719557493	-0.00860692500866454	0.979017178332426	0.995160277495735
Merged-chr1-13336042-4	chr1	13335555	13336555	+	937.258301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	36374.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	4.85036993246638	4.51655539761323	4.59872554491286	4.59269572885117	4.56770611051269	4.89167419432851	0.037976729104515	0.929166614792757	0.983987942057929
Merged-chr15-58273124-4	chr15	58272632	58273632	+	846.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	51037.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	3.94652752393495	3.79584442353649	4.16899261278847	4.23309192388105	3.83190140881646	4.51769406818301	0.689911270761163	0.202161256594368	0.591866360743962
Merged-chr17-35175151-2	chr17	35174652	35175652	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019467, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	900.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	4.66958925456323	4.57777779647785	4.86907735085586	4.9289191363279	5.05111042458037	5.03861929736079	0.690180398460061	0.0768124765247624	0.365129691660795
Merged-chr16-13796811-4	chr16	13796322	13797322	+	973.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039521, intron 10 of 17)	intron (NM_001039521, intron 10 of 17)	16123.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	5.56782758920741	5.81673175100036	5.98540067092083	5.8866445483878	6.07609039207665	5.78191949595245	0.24418160186567	0.447449948589316	0.806462597973018
Merged-chr7-90212270-3	chr7	90211758	90212758	+	858.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53174.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	3.34728701466212	3.49621967802023	3.32727949263043	3.36551333814537	3.34835904000941	3.71429779939505	0.310804670853331	0.609244710490225	0.885062773702803
Merged-chr15-101298701-2	chr15	101298201	101299201	+	959.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5489.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	4.10352139038438	3.96112716141783	3.99175894475983	3.73777368410589	3.68074472862808	3.91524559686317	-0.780490825378051	0.13012795964544	0.482323812471726
Merged-chr9-70007997-1	chr9	70007497	70008497	+	835.25	f0_balb.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-4551.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	5.12839078250252	5.28962743472237	5.13962585307485	5.25293638256798	5.01244839918405	5.02907681319676	-0.184810781636656	0.61146780495806	0.886122918847711
Merged-chr5-139150072-4	chr5	139149574	139150574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	-73.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	4.5219059396253	4.55226574987271	4.90508508651211	4.97511065190975	4.54109289036897	4.93507020861518	0.377002636173708	0.385195640113916	0.766247312213983
Merged-chr6-34217013-4	chr6	34216458	34217458	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39904.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	4.66309932298781	4.84984114874456	4.30697504053505	4.38682961606823	4.10064978804716	4.23058706662215	-1.01034777967117	0.0320172799031201	0.217193365904029
Merged-chr15-35150475-4	chr15	35149960	35150960	+	823.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357821, intron 1 of 11)	Lx7|LINE|L1	5346.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	2.77932307187451	2.82755630202207	3.02178157650912	2.90984476800024	2.71821236612355	2.79831535703386	-0.334985793133801	0.640867543166003	0.898655294692476
Merged-chr2-91207544-2	chr2	91207044	91208044	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357067, intron 7 of 10)	intron (NM_001357067, intron 7 of 10)	4632.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	5.4827937120592	5.78512002116278	5.98306943839525	5.46910528810677	5.64107825813004	6.16378682946098	0.0412245241321691	0.911226695885813	0.98004232415071
Merged-chr3-98024574-4	chr3	98024082	98025082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	11044.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.93386005582429	7.03790394087514	6.44207578327945	6.6289075917579	6.82525812170432	6.69990422422092	-0.185258107705899	0.518716003901617	0.84542522050122
Merged-chr4-41738159-4	chr4	41737661	41738661	+	781.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001286551)	TTS (NM_001286551)	3198.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	3.77149422759194	4.08923870984702	4.20230496425556	4.2505050059951	3.87036557374555	4.22597031943095	0.266337411897285	0.610393813537511	0.88555733136329
Merged-chr16-36632350-4	chr16	36631857	36632857	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	33720.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	8.50323566305815	8.641464385494	8.0912666347431	8.26332885996743	8.70540550884753	8.03348228156156	-0.0897856717047496	0.746228327076236	0.936300236930265
Merged-chr4-153958063-4	chr4	153957566	153958566	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163019, intron 1 of 2)	intron (NM_001163019, intron 1 of 2)	829.0	NM_001163019	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	6.32565508757962	6.78081058520007	6.12086180741456	6.37239434141369	6.40879221318157	6.08843615888713	-0.239827935411326	0.454955176805406	0.810666797758316
Merged-chr4-145278020-2	chr4	145277520	145278520	+	688.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009401, intron 10 of 12)	intron (NM_009401, intron 10 of 12)	-31150.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	3.73436050621057	3.51546519483096	3.92027291926892	3.62218694687203	3.73918083255281	3.52985883100414	-0.294518858846535	0.605096803027404	0.883394857670054
Merged-chr18-36713013-3	chr18	36712554	36713554	+	571.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	13761.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	5.17331136325297	5.308864950881	4.97308229040822	4.33199931536286	4.26886089543655	4.69945020581592	-1.71552489347037	5.3739853054469e-05	0.00167789331818246
Merged-chr10-17947772-2	chr10	17947272	17948272	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033432, exon 1 of 4)	exon (NM_001033432, exon 1 of 4)	295.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	7.28460230873201	7.15865968376178	6.99849236110617	7.10214920866491	6.82325900096725	6.85458427647891	-0.342414678543655	0.177871754293394	0.55892688546374
Merged-chr2-60209272-4	chr2	60208787	60209787	+	856.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-649.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	6.56364052875647	6.80483279318858	6.54538006240084	6.22428124620282	6.69550582295114	6.55243521058579	-0.218346106107118	0.449387738439147	0.807761520627757
Merged-chr6-38939937-4	chr6	38939438	38940438	+	811.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	20952.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.14973558148144	6.80189104975028	6.78520089654063	7.20847628209256	7.16690672941456	6.69521395462401	0.189994962988682	0.504082748592445	0.837433960485568
Merged-chr3-144044642-4	chr3	144044155	144045155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	157677.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.80120460305592	4.45469611063564	4.86040745488775	4.61722240455022	4.32824644163713	4.92454734767743	-0.184466038206702	0.686526765415008	0.916761528494478
Merged-chr16-24434812-2	chr16	24434312	24435312	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13279.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.78208065583985	5.84002529505873	5.53510550425071	5.29940195656574	5.34034224839363	5.10332902905098	-0.901931611059952	0.00842142789423468	0.0893032633769439
Merged-chr15-97422764-4	chr15	97422278	97423278	+	840.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-175491.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.13366173155507	4.23317761555362	4.02128459481696	3.99223293717208	3.51564447029954	4.13719398613807	-0.698066706427947	0.20881922061381	0.599938875382706
Merged-chr6-51743570-3	chr6	51743088	51744088	+	859.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	198295.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.4694210076837	4.95159433862047	4.88435839473019	5.129425274006	5.24324517563589	4.98691128241614	0.750410367109098	0.0657392181604407	0.334558340348254
Merged-chr14-76072775-4	chr14	76072264	76073264	+	910.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38051.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	4.9376831681475	5.09199546316331	5.18879038113996	5.56219114967282	5.81926518026346	5.53137887969653	1.14771025203972	0.000990934648759563	0.0178819540780711
Merged-chr19-45652564-4	chr19	45652067	45653067	+	969.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	7626.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	5.46469273316546	5.45072811424172	5.26143212414613	5.24068832541824	5.60417299914423	5.15325446055689	-0.0727607072847638	0.841366953624783	0.962909549034125
Merged-chr12-54823090-4	chr12	54822585	54823585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27423.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	4.47881358034609	4.4304034446434	4.45624423328454	4.83941246009389	4.59184870042993	4.68983432769662	0.6152623763411	0.141408904563963	0.502177385131545
Merged-chr9-110888743-2	chr9	110888247	110889247	+	796.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_146228, exon 10 of 27)	exon (NM_146228, exon 10 of 27)	8425.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	4.53202317533484	4.60926055291607	4.79256729751022	4.37071455632309	4.05354397791833	4.6391742565039	-0.706578121494977	0.131421923347685	0.484680232156467
Merged-chr7-90048476-1	chr7	90047976	90048976	+	753.0	f1_balb.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	19317.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.3970194464091	6.23339416520227	6.0723438055084	6.28884284800441	6.57383657040935	6.17892850449979	0.20052994912074	0.499767509401719	0.834715972162707
Merged-chr13-102700358-4	chr13	102699863	102700863	+	990.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	6805.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	6.21887810661012	5.82454265926485	6.10989482710185	6.52748539504861	6.57720560421937	6.07972182966453	0.607506816147923	0.0530633851836156	0.295199448710188
Merged-chr13-12837345-2	chr13	12836845	12837845	+	633.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-37266.0	NM_011118	18812.0	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	1.87144610550747	1.98654559918601	2.03699718966256	2.33565840843253	2.09231047672673	2.50830126295938	2.93245834856785	0.0065311264859115	1
Merged-chr2-167367555-4	chr2	167367044	167368044	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18366.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.36688492123047	4.68912199524598	4.58587573905309	5.14463748983725	4.68184089558112	4.69986643670476	-0.168543085374715	0.722721662841544	0.928916928569298
Merged-chr10-81300740-2	chr10	81300240	81301240	+	839.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	7777.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	4.47665106203612	4.2164669243416	4.52656941065671	4.156679113576	4.18909346818439	4.30148190047749	-0.519712105832437	0.259069952991257	0.656675683080894
Merged-chr2-24316985-4	chr2	24316472	24317472	+	730.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Rod|LINE|L1	-19888.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	3.02023972186464	2.81306775315786	3.14615301549903	3.02730725435725	2.7647223011217	3.16219689549582	-0.030815163461483	0.965650035027884	0.99200968078571
Merged-chr17-7878346-2	chr17	7877846	7878846	+	666.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47654.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	3.42318325387532	3.47474369268964	3.633274771089	3.60138306849867	3.32482144290447	3.80023977729148	0.257758390362051	0.665461731477302	0.907852501192998
Merged-chr2-53013393-1	chr2	53012893	53013893	+	773.333313	f0_balb.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	155525.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.82666855299704	4.11149933745587	4.05833158628141	4.00594062699446	3.97391489307796	3.59651654670549	-0.374967061675514	0.491644889031474	0.830622340874258
Merged-chr7-98328524-4	chr7	98328021	98329021	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-7313.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	6.32157448185172	6.09047641372111	6.21620955578582	5.69908914703775	5.72346929153393	5.9544006673662	-0.738472257454611	0.0138152117864137	0.125604910656022
Merged-chr6-89449478-2	chr6	89448978	89449978	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 4 of 6)	MTB_Mm|LTR|ERVL-MaLR	-86865.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	3.43998328930586	3.55194682933417	3.42319465165345	3.55503075883578	3.31149520521857	3.60258099273699	0.0489867855335654	0.933723241516628	0.985581479569838
Merged-chr17-46328041-4	chr17	46327528	46328528	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_170680)	promoter-TSS (NM_170680)	-5.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	6.8608160720396	6.92655656917156	6.99247400266785	6.84510504538039	6.92997090367836	7.13851648159438	0.0709529791852799	0.775960316107995	0.944804182096302
Merged-chr9-57836307-2	chr9	57835807	57836807	+	671.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2073.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	5.18884012816201	5.17257499524756	5.36168640389695	5.73909144959543	5.61283508329182	5.51459434891647	0.761604830180732	0.0228564466664232	0.176521181939831
Merged-chr11-120902732-3	chr11	120902277	120903277	+	989.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30095.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	5.47174083739556	5.52270637221576	5.74400780088288	4.93197308650764	5.36601907859069	5.37890319885227	-0.651618611699922	0.0741322983898555	0.358166861147801
Merged-chr17-70988766-2	chr17	70988266	70989266	+	742.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	1750.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	5.44009935559192	5.0509104209137	5.60337957189077	5.40368886632738	5.25345398602036	5.41879330865641	-0.0370681791617032	0.919748000330452	0.982080783809915
Merged-chr6-71831784-4	chr6	71831264	71832264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362138, intron 1 of 13)	CpG	444.0	NM_001253686	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	7.80242549053104	7.92443578759961	7.80073839961647	7.65114870272865	7.77075939778669	7.6165787944186	-0.231172056420942	0.289135678297154	0.686633011876864
Merged-chr11-53933505-4	chr11	53933009	53934009	+	877.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41806.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	3.67731953659615	3.20074785486574	3.72062105803891	3.51768484780142	3.40092504671729	4.01700248831518	0.394808430961162	0.543835986926762	0.857551302506722
Merged-chr14-70894169-6	chr14	70893695	70894695	+	973.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302095, intron 1 of 6)	intron (NM_001302095, intron 1 of 6)	4088.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.38887997063899	4.43831859660184	4.51233443851447	4.27329648187323	3.98290085134046	4.13994150239457	-0.846413311395297	0.0679650093093711	0.341165933249875
Merged-chr11-69401387-4	chr11	69400898	69401898	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 17 of 22)	intron (NM_001017426, intron 17 of 22)	-3164.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	2.92324469739482	2.72411108458629	3.00956324297929	2.6661794359221	2.78338501762989	2.84815151614444	-0.610479026536234	0.4033347403513	0.77875989555314
Merged-chr17-34139728-2	chr17	34139198	34140198	+	783.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_010386)	TTS (NM_010386)	-5718.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	2.49665951615548	2.42179286458826	2.63750082003852	2.35043581760622	2.18048920587872	2.59008920964923	-0.875612446073735	0.313908623917742	1
Merged-chr9-95603077-4	chr9	95602580	95603580	+	960.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34548.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	4.54539026708476	3.92410254232014	3.86793096923415	4.47460671507039	4.62195378710404	4.57067945832929	1.01796720699617	0.056307095777003	0.305902378258871
Merged-chr7-24851088-3	chr7	24850599	24851599	+	889.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	18592.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	4.00088889449667	4.34004223592644	3.87162010156666	4.12050359870957	3.87668768929726	3.83434652209948	-0.421802460215972	0.425243984181455	0.792988748085012
Merged-chr17-67260638-3	chr17	67260141	67261141	+	884.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	93818.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.75034003589461	5.64276264817303	5.71657359411194	6.69918665492331	7.0573581931657	6.46600567265111	1.78977903513689	5.00974548926452e-09	4.8926162285296e-07
Merged-chr6-125037892-2	chr6	125037392	125038392	+	585.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347452)	TTS (NM_001347452)	-1956.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	2.71358914343662	3.06393844381915	2.97361833299723	2.78272083831935	2.69341071860334	2.86773056915911	-0.736546942667438	0.315999409067177	0.710181849503593
Merged-chr11-6523852-4	chr11	6523369	6524369	+	822.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1a|SINE|B2	-2911.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	4.81612465915804	4.80050615027815	4.99026949668347	5.15461050851794	4.73746259059716	4.79749719135634	0.0981120128440633	0.807445344383601	0.954557080558103
Merged-chr16-36476125-2	chr16	36475625	36476625	+	623.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-20733.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	3.64637608635587	3.65246794217536	3.76958971188081	3.48877986078778	3.61127848473362	3.78931838680967	-0.194670673272968	0.724763668752622	0.929459725191008
Merged-chr6-82766690-4	chr6	82766181	82767181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	7773.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.69747435529861	5.70742842707188	6.20333622719881	5.81039818294793	6.08979312751449	6.56839045129113	0.52599190832423	0.146163931564456	0.509946203339702
Merged-chr17-36951150-4	chr17	36950644	36951644	+	975.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029632, intron 1 of 2)	intron (NM_029632, intron 1 of 2)	648.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	7.75302564100681	7.61879757945029	7.47168163629416	7.61775788289059	7.7803347983301	7.4651795738543	0.0148183695615985	0.950087267715366	0.988400419899929
Merged-chr6-13837128-4	chr6	13836566	13837566	+	837.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001330666, exon 4 of 4)	5' UTR (NM_001330666, exon 4 of 4)	2876.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	3.32904157218771	3.1864184906739	3.27076994522495	3.33687139036579	3.04043324747128	3.55528140190227	0.228040191725617	0.726343366221572	0.929802379677973
Merged-chr5-66112968-2	chr5	66112488	66113488	+	725.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14809.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	6.48859808722042	6.78111256247368	6.89763508124107	6.50587820823383	6.62810886137372	7.08245999923768	0.0403631814579386	0.892563597508972	0.975146620821922
Merged-chr3-88102910-4	chr3	88102399	88103399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033484, intron 19 of 37)	intron (NM_001033484, intron 19 of 37)	20848.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	7.05919741664134	7.16865225094195	6.85959880305336	6.67855068589066	6.58242571399748	6.52234028922652	-0.690602946562732	0.00717547353789726	0.079572854219627
Merged-chr10-34281532-3	chr10	34281008	34282008	+	873.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-682.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	8.0191175216741	7.79499501086701	7.66452886533905	8.14121868068276	8.40237362711689	7.75834494210538	0.421988864333017	0.108811083076963	0.440755119220504
Merged-chr6-82805187-4	chr6	82804664	82805664	+	948.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45B|DNA|hAT-Tip100	-30710.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.92914053392542	4.79478909448364	5.16863327674695	4.91853927609399	4.73551099091497	5.26131860717374	0.0274857080491459	0.946588222790144	0.988007649185823
Merged-chr3-90212278-2	chr3	90211778	90212778	+	894.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027015)	TTS (NM_027015)	1369.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	3.89869302264967	3.6333808940976	3.9064061387953	3.61288343965138	3.6016075661814	4.02008741499226	-0.213466463540453	0.70328481229347	0.922108924938678
Merged-chr11-45926879-4	chr11	45926361	45927361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18074.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	3.35485710104171	3.51324897741134	3.44117432334458	3.22601993899514	3.12353929765631	3.51143807154923	-0.593240038508646	0.342314122900367	0.731283521951228
Merged-chr16-91353575-2	chr16	91353075	91354075	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-19208.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	6.13960745261525	5.88399447321734	5.91203893734474	5.70108249627629	5.64984880725813	5.74848650001402	-0.519479223023965	0.0905848199533451	0.400392122107726
Merged-chr9-25484437-6	chr9	25483941	25484941	+	884.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	2844.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.45948414445773	4.13389865880692	3.9759159420892	4.69930347527205	4.45371030957948	4.15659370209381	0.639862020550293	0.207263054050973	0.598028441690595
Merged-chr15-25681318-2	chr15	25680818	25681818	+	895.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	58768.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.23935090301775	5.04456505583841	4.88697639168576	5.54269448963689	5.56996912732019	5.03455716578878	0.689517683570464	0.0757764316156502	0.36249311957428
Merged-chr1-138190868-2	chr1	138190368	138191368	+	864.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15563.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	3.00855606069097	3.09281491779378	3.10861534518434	3.08694233380135	2.84829052318138	2.94171902436417	-0.505922449170516	0.455799598401765	0.811150932154463
Merged-chr7-45712578-2	chr7	45712078	45713078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_203280, exon 4 of 7)	exon (NM_203280, exon 4 of 7)	2629.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	2.85301895277618	2.71124485571541	2.97851297850215	2.9199435600538	2.6645943304104	2.99301209855881	0.0665069543280091	0.92751009792387	0.983584626679457
Merged-chr5-32747016-2	chr5	32746535	32747535	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-693.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	7.82953440426412	8.1754626476753	7.76186655877251	7.95710932495714	7.96428141710048	8.02474016995999	0.0557804499522504	0.810950338453766	0.955096593239846
Merged-chr4-136185577-4	chr4	136185093	136186093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 5 of 6)	intron (NM_177733, intron 5 of 6)	4811.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.02321910344398	3.94376605819056	3.904210099432	3.66327490979392	3.8116270312938	3.71530893991058	-0.71984081629694	0.168575632489048	0.545184755223438
Merged-chr6-134267272-2	chr6	134266772	134267772	+	614.166687	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-129057.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	4.28306906961572	4.00208567357697	4.02253002663617	3.35664500404951	3.3729978438375	3.45112952874411	-2.58151025268415	1.75156736054243e-05	0.000650935314586935
Merged-chr5-124629011-4	chr5	124628526	124629526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-26.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	6.69160886733929	6.72009911664605	6.82998192233581	7.03097626619899	6.96720493224915	6.61519341566885	0.230519728593415	0.383020075803996	0.764514943927337
Merged-chr6-54780753-4	chr6	54780239	54781239	+	959.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36177.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	4.72870441825857	4.7764339938322	4.83840356027812	4.79550348869049	5.29834302690458	5.14775242506187	0.707408202676897	0.0758910913864355	0.362611383334201
Merged-chr4-53440246-4	chr4	53439749	53440749	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159633)	promoter-TSS (NM_001159633)	-164.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.73290748806545	6.02346042860637	6.14749404378407	6.59050158063558	6.08760202524454	5.97156039822209	-0.160708510838849	0.65552563664178	0.90429384180742
Merged-chr8-80338117-4	chr8	80337601	80338601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR23|LTR|ERV1	-155944.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	4.10574181415635	4.24856519169092	4.76489746781096	4.1470841482272	4.10587693763848	4.42785409745304	-0.438342519421622	0.386876514426546	0.76724843120478
Merged-chr4-155571664-4	chr4	155571177	155572177	+	650.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355599, intron 1 of 10)	MLT1B|LTR|ERVL-MaLR	7862.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	3.22805317197848	3.2069069422318	3.48780042212695	3.69376791017442	3.2928396685086	3.21563844174755	0.430298913922122	0.503508538947915	0.837064963912371
Merged-chr16-32163640-4	chr16	32163130	32164130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1964.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	6.90375409794127	7.26526429200881	6.99276481414731	7.05590837737184	7.12141895216393	7.45398097628889	0.223278370283298	0.402522663644543	0.778081174697644
Merged-chr16-35919245-3	chr16	35918726	35919726	+	900.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19244.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	7.21574907173425	7.31563114395912	7.16561140856235	7.68250489756271	7.73202780736207	7.46474134838518	0.587987301154738	0.0115076760410807	0.111035611470675
Merged-chr5-147541862-2	chr5	147541342	147542342	+	616.833374	f0_balb.idr|f1_c57bl6.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	111686.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	6.50536092846755	6.80759553917647	6.71004419483455	6.78606359612631	6.8615267373072	6.72115780197493	0.179600959278342	0.490852753947718	0.830181469396006
Merged-chr2-129322948-2	chr2	129322408	129323408	+	726.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-12936.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	4.09854868431677	4.41336712384651	4.52538617773122	3.82192535696603	3.9022794596805	3.77031423046078	-1.50239151246625	0.00384503148080718	0.0504259205428014
Merged-chr10-93689028-4	chr10	93688513	93689513	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5691.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	6.84033118691701	7.33863591185757	6.53087876306984	6.13742473618549	6.42329322863855	6.42158750464187	-0.985425579255313	0.00211751092194709	0.0322522146793655
Merged-chr5-142898543-2	chr5	142898043	142899043	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-3305.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	3.2717756558751	3.66695668431577	3.7845527966149	3.45327495444549	3.69775490364404	3.80521671498088	0.238026609478676	0.695444431254493	0.919289041383579
Merged-chr16-36929601-1	chr16	36929101	36930101	+	549.0	f1_balb.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-5382.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	3.17536481683769	3.12338150649664	3.34463876105986	3.08648939179694	3.23320617484866	3.46673341687777	0.218831185533451	0.73311083003502	0.932019647754835
Merged-chr2-91264499-2	chr2	91263999	91264999	+	647.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	-616.0	NM_001166024	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	6.93438747622478	7.15276573799244	6.84885070891084	6.56505823350081	6.99903538800035	6.65252872522619	-0.349380995210706	0.207779758213865	0.59868364609575
Merged-chr8-105636374-4	chr8	105635870	105636870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181322)	promoter-TSS (NM_181322)	-168.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	7.9217506323506	7.17820052502529	7.46053791644829	7.72324271125603	7.19792494575271	7.48684211519604	-0.110808304768345	0.712399040221698	0.925051487808475
Merged-chr15-79456624-4	chr15	79456092	79457092	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14449.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	6.28749564158899	6.23656894919034	6.36166659880704	6.48537066587421	6.48915842473496	6.42135722937441	0.288536896855096	0.278433684104831	0.675623815920472
Merged-chr8-84660700-1	chr8	84660200	84661200	+	594.0	f0_c57.idr	TTS (NM_010499)	TTS (NM_010499)	2152.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.37803973249441	5.09240413312757	5.35913465463766	5.49566818707804	5.20588780552693	5.01790961440066	-0.0368586841852564	0.921461011050593	0.982542868764899
Merged-chr3-84773097-3	chr3	84772595	84773595	+	787.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42482.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.76186788377797	5.85591877686267	5.46586716611398	5.56106901632154	5.77294406605437	5.72934042546444	-0.0442609820397691	0.892595826994251	0.975146620821922
Merged-chr2-130476889-1	chr2	130476389	130477389	+	643.0	f0_balb.idr	intron (NM_001355161, intron 1 of 21)	RMER10A|LTR|ERVL	26611.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	4.29152255575736	4.49794756932118	4.24370605077111	3.88724968993566	3.65993372535356	3.81537495445747	-1.71459573871041	0.000788972364440486	0.0150226115561474
Merged-chr16-87585772-4	chr16	87585264	87586264	+	989.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144854, intron 4 of 4)	L1MB8|LINE|L1	32434.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	4.06511970396863	4.22264257006599	4.59886691964048	3.90018535660279	3.35355043461612	4.06315981300987	-1.49968583747363	0.0138993488852556	0.126163087383479
Merged-chr17-33815589-3	chr17	33815076	33816076	+	984.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030697, intron 1 of 10)	B2_Mm1a|SINE|B2	5053.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	5.35627997900178	5.30824929797368	5.20778026550936	4.3059594984913	4.3206409414513	4.43093214739684	-2.211568533963	6.8142721809232e-08	5.05800142399873e-06
Merged-chr3-100596499-3	chr3	100595991	100596991	+	838.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010763, intron 8 of 12)	intron (NM_010763, intron 8 of 12)	88982.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	2.65294758444969	3.03684836767174	2.88852899666638	2.60870821355156	2.87326311551566	2.84046328943994	-0.447069626288005	0.559283900271505	0.864901733108576
Merged-chr19-5426010-2	chr19	5425510	5426510	+	583.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001256515, exon 2 of 2)	exon (NM_001256515, exon 2 of 2)	866.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	6.0701885707653	6.13727943531332	5.54692957797927	6.3610808016378	6.64352340075467	5.95934864286096	0.682075299124124	0.0545641100798337	0.299986819642134
Merged-chr14-50929698-2	chr14	50929193	50930193	+	756.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	1156.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	6.03066555888594	6.11418409486785	6.40287658972302	6.0969043229517	6.23305929436074	5.9699510388178	-0.116845269556016	0.697253344342218	0.919874864928276
Merged-chr10-81295068-2	chr10	81294568	81295568	+	614.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	2105.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	3.47507339022126	3.48931133713932	3.59323397899375	3.17977557729364	3.49690557166884	3.71191738014614	-0.148938256681468	0.808511823399865	0.954683711776353
Merged-chr6-146776830-4	chr6	146776309	146777309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001346666, exon 12 of 12)	3' UTR (NM_001346666, exon 12 of 12)	-28721.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	3.21393124977199	2.9498272875809	3.04016164967728	3.18687264975325	2.8148030528364	2.79840792036627	-0.589465376106843	0.419800497872062	0.789288680109782
Merged-chr2-119047681-1	chr2	119047181	119048181	+	565.0	f1_balb.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	562.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	5.92863844153052	5.73470779589014	5.43248647965791	6.25639787026991	5.99845003634421	5.56239282042026	0.449636691936096	0.212639561034258	0.605171266998975
Merged-chr17-70994806-3	chr17	70994334	70995334	+	868.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026064, intron 3 of 3)	intron (NM_026064, intron 3 of 3)	3178.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	5.25481573127731	5.11670721598413	5.26506654800883	4.589341811191	4.6236418046697	4.74248163992859	-1.24847328721538	0.00116197396317039	0.0202398010315013
Merged-chr17-35218859-7	chr17	35218341	35219341	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13490.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	6.60739758522449	6.46408356261045	6.39557500817166	6.80943859492449	6.81190572427919	6.79662424997977	0.488469661264257	0.0570638337825552	0.308042525066748
Merged-chr19-44295406-2	chr19	44294906	44295906	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	1730.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.57215146759834	4.33787939083635	4.72252342292158	4.9808794837838	5.04730640023955	4.39680590152794	0.706778862481159	0.122815475460205	0.468881891366023
Merged-chr13-58482527-1	chr13	58482027	58483027	+	665.0	f1_balb.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-79184.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	2.82237933454988	2.68599407040241	2.93358292392759	2.59497430779316	2.73954312193945	2.64175120668091	-0.801302362522672	0.288655362215446	0.68612338968242
Merged-chr1-153518758-4	chr1	153518237	153519237	+	927.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 7 of 11)	B3|SINE|B2	30977.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.97337616357055	4.83996524736549	4.44333050730266	4.598446772925	4.42082908815274	4.512470581402	-0.650404404991764	0.13710760056726	0.494750389349087
Merged-chr2-30571891-2	chr2	30571391	30572391	+	625.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23153.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	3.52027976710334	3.37309571255158	3.42420099956777	3.84186452971886	3.6785386253671	4.00734376003665	1.39333631031571	0.0150245998410449	0.132883386859446
Merged-chr10-94913564-4	chr10	94913085	94914085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	30993.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.83182617556798	5.1840599560437	4.70995647287141	4.6293914518954	4.56603901314477	4.77668339101555	-0.643774598271616	0.123092431913508	0.469375521223989
Merged-chr18-60791656-2	chr18	60791158	60792158	+	870.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12191.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	3.13844622103325	2.97248913505899	2.77426296730527	3.31324518762098	3.10950305066239	3.11044150391277	0.909930497305192	0.203810664291827	0.594024469127845
Merged-chr14-25473704-3	chr14	25473248	25474248	+	969.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14563.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	8.3757768817365	8.31213331239462	8.01353567247158	8.19882865958517	8.54858972814897	7.84887871373104	-0.010144615267464	0.96969989390374	0.993198925979166
Merged-chr13-75840266-2	chr13	75839778	75840778	+	1000.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	392.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.01931209336606	6.15884520291761	6.04067578569073	5.68290048550554	5.81158611663169	5.56124653825945	-0.665458275560635	0.0297894411819369	0.207893971472499
Merged-chr14-31020694-2	chr14	31020194	31021194	+	857.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359857, intron 1 of 30)	intron (NM_001359857, intron 1 of 30)	989.0	NM_001359856	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	4.2550051150232	3.64771543423385	3.87306742843261	4.02950903475128	4.07686028282727	4.18528063096953	0.408833854193463	0.451222465362364	0.808957790071745
Merged-chr2-30393068-4	chr2	30392571	30393571	+	998.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020329, intron 1 of 7)	intron (NM_020329, intron 1 of 7)	817.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	4.68511859407433	4.80356737399705	4.87598057638488	4.54809783151829	4.46091489381686	4.47387416428525	-0.70689256296781	0.0862439116877876	0.389028875108445
Merged-chr2-58932379-4	chr2	58931880	58932880	+	918.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	177196.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.36709370169606	4.20451787769326	4.2200071907763	4.16915534715166	4.23863552282049	4.14680477793335	-0.216526398960318	0.638992573828011	0.897847437626511
Merged-chr12-54957511-1	chr12	54957011	54958011	+	591.0	f1_balb.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	28825.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	2.37599800376161	2.41254079302535	2.71439001943978	2.37557489679622	2.48097345448766	2.48342457497574	-0.338423393634042	0.679498806528763	1
Merged-chr8-46617303-4	chr8	46616789	46617789	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009810)	promoter-TSS (NM_009810)	-2.0	NM_001284409	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	6.11958231241242	6.29839420927685	6.53963752119626	6.40957032699339	6.32881339421414	5.92443584974689	-0.123454441205066	0.691459559108061	0.918326102826144
Merged-chr12-21373641-4	chr12	21373165	21374165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001277266)	promoter-TSS (NM_001277266)	-33.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	7.35361890860851	7.84961635355976	7.68232608252359	7.89045741208777	8.08494725512158	7.88269260834652	0.449321127543967	0.0694926636581445	0.34494694014597
Merged-chr8-104370607-4	chr8	104370143	104371143	+	981.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25164.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	6.25275926756806	6.14726690580757	6.32299732931904	6.16134204977875	6.6445987163935	6.47485224754412	0.344983092187736	0.240479082666606	0.637542024844123
Merged-chr7-25790801-4	chr7	25790310	25791310	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2077.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	3.65648748815665	3.65957021345196	3.6514128758118	3.5149606346563	3.61641929634446	3.72110873067682	-0.135500774038463	0.804829867863909	0.953651704501661
Merged-chr11-114694640-2	chr11	114694140	114695140	+	548.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 3 of 13)	RLTR11A|LTR|ERVK	19172.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	5.80818611502376	5.96069160877333	5.62970103012061	5.73499672510899	5.49700349377991	5.71954008387703	-0.306506519056096	0.342417671408883	0.731306390936577
Merged-chr3-90080295-4	chr3	90079770	90080770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	CpG	749.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	7.61712948458184	8.02350242969572	8.04545456265359	7.74732877515589	7.99472302935797	8.2618527663336	0.152671929968981	0.556520742392521	0.863603167403937
Merged-chr5-30921678-6	chr5	30921143	30922143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	84.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	6.95910534282104	6.6882388677485	7.08679765714396	7.13816888373036	7.11841743279854	7.20474534269187	0.36216653108416	0.153482831297137	0.522459475804784
Merged-chr4-45342601-3	chr4	45342109	45343109	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_153167, exon 1 of 7)	exon (NM_153167, exon 1 of 7)	508.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	7.4640016997534	7.68390176736151	7.56830016420605	7.53997345926652	7.14564250300798	7.58753005158799	-0.21078063826399	0.402043307593643	0.77787096574423
Merged-chr13-84222298-4	chr13	84221791	84222791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_138587)	promoter-TSS (NR_138587)	-5.0	NR_029418	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	5.902137977727	5.7678620077553	5.67986018383287	5.85995028139255	5.82956809544011	5.92024962537213	0.132869386534485	0.662033975850413	0.906550202625873
Merged-chr15-50802320-3	chr15	50801785	50802785	+	879.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	86764.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.14087555117947	3.03105946160877	3.12608073954523	2.97747867088073	2.91774492717637	3.02255441716341	-0.596587064121492	0.369181245950421	0.753885996270167
Merged-chr15-76722777-4	chr15	76722272	76723272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-599.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	5.24702797941629	5.22013911165051	5.36542629659574	5.47616588261781	5.4347524178553	5.20437716566837	0.222132697163327	0.520056004696014	0.846147318956335
Merged-chr8-109039974-3	chr8	109039484	109040484	+	704.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35238.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	3.08175153509875	3.1030175170912	2.91244264920047	2.9874682517971	2.71200438338806	3.16337252276701	-0.350933068066619	0.627843449323387	0.89339186113949
Merged-chr11-64835304-1	chr11	64834804	64835804	+	542.0	f0_c57.idr	Intergenic	Intergenic	-143731.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	3.42687498317711	3.37432981099715	3.50383198119382	4.01722817666809	3.90077035785995	4.29456662242386	2.1859519136516	0.000142225625306712	0.0037991363821897
Merged-chr2-160648886-2	chr2	160648386	160649386	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	2989.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.81721495813317	4.9096739814732	4.94211427366744	4.76235047804123	5.07176342070685	5.00674886329461	0.151718488889002	0.69453086073055	0.919210273513843
Merged-chr2-132598705-2	chr2	132598205	132599205	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033469, intron 1 of 3)	(TTCCC)n|Simple_repeat|Simple_repeat	509.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	8.24584083899442	8.14198443752884	8.01647898365614	7.58908823903344	7.80716787838839	7.86612185978786	-0.545623449128541	0.0147095358772726	0.130847720758135
Merged-chr15-97517988-4	chr15	97517480	97518480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	187842.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	6.19717190838412	6.46263775719362	5.7666341721955	5.46909399612169	5.98296028508173	5.50241845768386	-0.863103658134522	0.0195248733383713	0.15884099146844
Merged-chr6-82996938-4	chr6	82996472	82997472	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	36499.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.72590766489322	7.68619324011311	7.66967794974663	7.46658563074602	7.81645038726229	7.32574287868297	-0.188277792440984	0.446229318927092	0.805734325100591
Merged-chr2-35493248-2	chr2	35492748	35493748	+	615.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31799.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.38405802273381	4.25331030504587	4.82303689995043	3.85244650220386	3.69304322436241	3.86608304278214	-2.04053372270972	0.000120537145454785	0.00332107774801384
Merged-chr9-96537661-2	chr9	96537161	96538161	+	837.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58986.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.3329625746953	4.58065151281738	4.55862246819226	4.26001994306333	4.40112194467224	4.73701311617061	-0.0546707006826923	0.904259888610728	0.978078941497523
Merged-chr5-96918693-1	chr5	96918193	96919193	+	730.0	f1_balb.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2579.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.97424724867494	6.75165086053082	6.99935591333613	7.20168696728353	7.30403562327414	7.44760502753736	0.618480234829395	0.0121769137665441	0.115374247402255
Merged-chr14-65345662-4	chr14	65345181	65346181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12995.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	6.13837673324007	6.30914686233156	6.49305941371589	6.2923252100894	6.63518689440266	6.50027746093083	0.285199222646951	0.322107832709982	0.715558216150474
Merged-chr10-93477036-4	chr10	93476536	93477536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-11732.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	6.16678847560176	5.95235068458879	5.71800464267493	4.96138853259601	5.15959201865995	5.24162754845483	-1.60458556892385	4.2017173199989e-06	0.00019000896454482
Merged-chr11-69402278-2	chr11	69401778	69402778	+	797.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001017426, exon 14 of 23)	exon (NM_001017426, exon 14 of 23)	-4044.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	2.45819808593459	2.68737367259622	3.00375790548674	2.83408681673687	2.50846803400461	2.96400023777074	0.241730559458174	0.769998430167753	0.943310056383255
Merged-chr5-5419434-4	chr5	5418953	5419953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39202.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.83673059532348	8.13550621031922	7.65099391770025	7.84828292724082	8.27711374877426	7.78115506368558	0.14176313335789	0.593681569151651	0.878589727861081
Merged-chr10-62602206-5	chr10	62601687	62602687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_019553, exon 1 of 15)	exon (NM_019553, exon 1 of 15)	111.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	8.06194650034272	8.44207487423203	8.1878714952306	8.18640271474434	8.38596855730778	8.18397843497239	0.0220785749588864	0.92286447091013	0.982621045978137
Merged-chr1-181951422-2	chr1	181950922	181951922	+	811.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	68558.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	3.26521515170374	3.26898117730407	3.49125835504291	3.26966634114247	3.46474049112305	3.4011187802962	0.171449664918654	0.777580775048093	0.945202525595529
Merged-chr13-23717732-4	chr13	23717222	23718222	+	966.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-6868.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	7.26908754078942	7.04580517554001	6.9050998561697	7.24709621139697	7.36871552520621	7.15484726756454	0.263223797744766	0.293371935430248	0.690262155452762
Merged-chr12-3852700-3	chr12	3852268	3853268	+	924.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	9476.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.56918415953918	4.53195330653894	4.71186463522248	4.60687645334955	4.43616366818705	4.73964840235955	-0.0260501873681864	0.950767102063753	0.988497463870961
Merged-chr3-34034995-3	chr3	34034501	34035501	+	868.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	14922.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	5.53507075268791	5.66781588924989	5.76613932174724	5.49947123401785	5.73882318491312	5.89848753755158	0.115950579459848	0.722902285003386	0.928972897683858
Merged-chr14-70119581-3	chr14	70119067	70120067	+	918.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360404, intron 2 of 7)	intron (NM_001360404, intron 2 of 7)	19474.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	3.20184976733667	3.0871686503208	3.57825994153714	3.36919709229431	3.02943563014097	3.39315941756869	-0.116293660722588	0.862535539079646	0.968083292979043
Merged-chr14-75022708-2	chr14	75022208	75023208	+	860.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	6681.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	2.24576946423992	2.42391007033678	2.41828030546043	2.46763708265156	2.34737008235622	2.5555972895192	0.575898604524742	0.485547309224751	1
Merged-chr7-143625275-4	chr7	143624770	143625770	+	912.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175649, intron 1 of 7)	RMER4A|LTR|ERVK	2575.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	4.89080125157672	5.05454018373868	4.66367469917954	4.5655440162533	4.77559922680197	4.68941291598398	-0.469821594099585	0.253090931798273	0.650473226391001
Merged-chr11-75659450-4	chr11	75658907	75659907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080774, intron 5 of 31)	L2a|LINE|L2	3392.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	5.73468627898704	5.55788725063763	5.71133044669695	5.77653033934079	5.8926915066737	6.01199486912803	0.407173472799405	0.188819852300794	0.57432638149413
Merged-chr2-112284533-4	chr2	112284007	112285007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133648)	promoter-TSS (NM_133648)	-181.0	NM_133648	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	3.27683489697379	3.36742449600064	3.35621293519671	3.1899358389957	3.07690060052278	3.25992524887333	-0.674082351446656	0.27999374301468	0.677712405642304
Merged-chr9-21514979-2	chr9	21514479	21515479	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4745.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	4.71355151408895	4.6188092443326	4.80997972478976	4.77723091276244	4.75467004809288	4.87494604773901	0.204585198267986	0.605040064938609	0.883339598256133
Merged-chr3-95631614-2	chr3	95631114	95632114	+	721.833374	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019561, exon 4 of 4)	3' UTR (NM_019561, exon 4 of 4)	6634.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	6.82660656826932	6.84298810452555	6.83715260402748	6.85237338225226	7.0012913212792	6.83601384653742	0.106285674789633	0.665182566007184	0.907762144972922
Merged-chr12-100115373-2	chr12	100114873	100115873	+	627.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 3 of 9)	intron (NM_008947, intron 3 of 9)	3042.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	5.24193225147158	4.88072246788692	5.54577349805516	4.96878896667985	4.74154954461978	5.28244818532509	-0.491669775198703	0.24512178823258	0.642381314494918
Merged-chr2-142698524-8	chr2	142698018	142699018	+	907.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202946.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	6.44034754578587	6.33028140179167	6.4026348492594	6.75384388399592	7.00929519423209	6.77019588922269	0.739253099373101	0.00492073245692215	0.06055972582097
Merged-chr4-148444744-4	chr4	148444314	148445314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027873)	promoter-TSS (NM_027873)	-63.0	NM_027873	71707.0	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	5.88897831521052	5.86665237324547	6.23622555850551	6.35218713027993	5.90965475402499	6.02323319279042	0.189291765034171	0.554784095363934	0.862962911166736
Merged-chr2-6223770-2	chr2	6223270	6224270	+	632.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-10776.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	2.47517681400374	2.69531066155181	2.48182511830055	2.74383446948045	2.68707671029415	2.75078532444404	0.929684820417745	0.234880242157517	1
Merged-chr6-120112636-4	chr6	120112132	120113132	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	19252.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.74260844256825	6.40506734033701	6.42829679137386	6.53585592600989	6.67770273041397	6.45028810985035	0.0402499302809438	0.885008201754704	0.973538624783452
Merged-chr12-105785129-4	chr12	105784658	105785658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	CpG	461.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	8.62986566337745	8.76004793153996	8.04321928739551	8.68819600660853	8.4104518075994	8.35973719251425	-0.035864679482898	0.892895095076921	0.975146620821922
Merged-chr16-33580722-2	chr16	33580222	33581222	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	62127.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.17361103277673	3.20515298248698	3.22974065310865	3.44155163803441	3.11346184456168	3.2439586910959	0.285713933385016	0.651936948296365	0.902896807825606
Merged-chr6-57773995-4	chr6	57773514	57774514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	51111.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	6.21460752472953	5.96731084333651	6.14718842659345	5.72776153285103	6.11235210021217	5.96448384927493	-0.277662468004796	0.368696784931756	0.753594740654151
Merged-chr7-16045500-2	chr7	16045000	16046000	+	966.214294	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26345.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	6.20915167416797	6.49228805739024	6.7030688138607	6.57474514451309	6.70255132421623	6.66845481376512	0.281754846232424	0.316788882766791	0.710777474639496
Merged-chr3-126624131-8	chr3	126623474	126624474	+	835.395813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	27023.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	6.48701355897629	6.50986371442282	6.3959125018506	6.70181034115199	6.73173847977403	6.49349810907915	0.295782874468831	0.2615945222954	0.659388597120289
Merged-chr8-88274891-4	chr8	88274390	88275390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	2487.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.35413053318435	4.51715129033526	4.61771818178795	4.44113747220281	4.65771836650234	4.47961793371494	0.104185351103151	0.809846444984465	0.954819723409146
Merged-chr2-155533637-2	chr2	155533145	155534145	+	911.25	f0_balb.idr|f1_balb.idr	intron (NM_019811, intron 2 of 17)	Charlie2a|DNA|hAT-Charlie	15602.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	5.4512805053863	5.6157328626303	5.115171790784	3.78899498515244	3.89491400279181	3.91900941556276	-4.25408550817266	1.69719191793292e-13	3.74588713812632e-11
Merged-chr13-119617403-3	chr13	119616911	119617911	+	780.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6408.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	3.8998393658083	3.88764825049036	3.97870833276272	3.5985395484974	3.62741326028705	3.90560900077617	-0.686353899899669	0.197759358170391	0.585863946830987
Merged-chr8-120666292-2	chr8	120665792	120666792	+	686.799988	f1_balb.idr|f1_c57bl6.idr	intron (NM_010926, intron 1 of 4)	B3A|SINE|B2	1820.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	3.86517362611617	3.74452169304845	4.03753145528421	3.73177598781843	3.61480427129239	4.01514420309385	-0.299301108756051	0.581517189021568	0.873299082500526
Merged-chr4-115848211-4	chr4	115847680	115848680	+	969.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8982.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	7.74660665525197	7.92044529205569	7.57009362799776	7.32383876392578	7.80362467759247	7.33844056241369	-0.346286952638808	0.189400411921902	0.57523194054815
Merged-chr11-32542287-3	chr11	32541798	32542798	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9032.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.46799160024243	7.68428546218276	7.88081549148397	7.39552458402031	7.71710358499436	7.32509058445914	-0.268523911748543	0.295224223663965	0.692102568263533
Merged-chr7-45336576-3	chr7	45336086	45337086	+	871.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010473, exon 1 of 6)	exon (NM_010473, exon 1 of 6)	1317.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	2.40347793116011	2.51848693429495	2.60931466266126	2.27576401214227	2.26384992735298	2.4345715550418	-1.23104670725729	0.144331461281106	1
Merged-chr16-87717104-2	chr16	87716604	87717604	+	609.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	18150.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.32855472598349	5.3354430891539	5.23460564249147	5.38215210785812	5.74434233421721	5.60055375083132	0.549832293579279	0.107512872543106	0.437903524331431
Merged-chr15-99392316-1	chr15	99391816	99392816	+	788.333313	f1_c57bl6.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-631.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	5.33563157007375	5.16254987276129	5.3321114482796	6.16422759085204	6.38049263855577	5.8110007057343	1.60106778740989	1.9702531045177e-06	9.8285863501624e-05
Merged-chr4-141663725-3	chr4	141663206	141664206	+	991.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347237, intron 1 of 18)	CpG	409.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	7.74072483217916	8.11487266436309	7.64451914238654	7.86288709504061	8.00374154549258	7.86816044800838	0.0831482869039346	0.731724311642604	0.931535693390145
Merged-chr7-44359500-2	chr7	44359000	44360000	+	822.666626	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027049)	TTS (NM_027049)	15530.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	4.93285281162127	4.70094826372843	4.68761252889418	5.07348197339083	4.90646100613077	4.98468024937643	0.450906375697722	0.248268961157846	0.645445615702094
Merged-chr10-127642510-3	chr10	127642014	127643014	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-472.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	8.6494548237669	8.33211610124106	8.24877591373094	8.47543047393855	8.83258532749193	8.37940118157681	0.21878282189237	0.372140317803895	0.756099728816208
Merged-chr5-125339237-4	chr5	125338746	125339746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1848.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	6.14079233851691	6.09506215145897	6.01589570610699	6.20388191305461	6.16651663015288	6.05382314403183	0.099080315404954	0.726566097329766	0.929893743295524
Merged-chr17-35045317-4	chr17	35044812	35045812	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001146215, exon 4 of 25)	exon (NM_001146215, exon 4 of 25)	1310.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	4.03377328991826	3.48194200359825	3.75589605796011	3.71828747782853	3.70318151985568	3.5534894807758	-0.383780628420986	0.510455024131408	0.840886591313675
Merged-chr9-65908947-4	chr9	65908473	65909473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	-37.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	6.37827326828684	5.62940354176308	6.20899198143915	6.16169602248168	6.0375587963439	6.01101501450258	-0.0642957570615804	0.851019850410496	0.965052056707323
Merged-chr10-19958373-4	chr10	19957878	19958878	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	23852.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.98715663293235	6.03991838607558	5.96184358520553	5.53338360493166	5.5875417292082	5.70258094003688	-0.709893952705596	0.0193816760872518	0.158155389219186
Merged-chr10-80018881-4	chr10	80018377	80019377	+	831.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027521)	promoter-TSS (NM_027521)	-798.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	3.22764441540337	3.36899129792239	3.33369877819957	3.36466870452868	3.08358105166041	2.98175869935346	-0.642437957394004	0.332013586800999	0.723304009500642
Merged-chr7-125546526-3	chr7	125546031	125547031	+	906.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC|LINE|L1	-5751.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	3.63364286398776	3.6414974587148	3.61134769764659	4.47795613407863	4.60016506590127	4.52449328742042	2.76368438463795	1.96845543231592e-07	1.29479240800113e-05
Merged-chr17-84273065-4	chr17	84272571	84273571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-85124.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	7.24967004247512	7.35087543647734	7.0065663781931	7.05605100152944	7.37336592573411	6.75887701861287	-0.172895431661351	0.539541028413297	0.855974105632505
Merged-chr19-59043547-2	chr19	59043047	59044047	+	686.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	32522.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.8949592569637	4.89010755050487	4.97041308707038	5.07794181911472	5.24327504703696	4.72181543121659	0.283587863296151	0.474195608056783	0.821299449548079
Merged-chr1-193060331-4	chr1	193059853	193060853	+	761.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24578.0	NM_181546	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	2.85320892648072	2.65277147526523	2.7641124385398	2.84439982990259	2.87080642796511	2.8988775224548	0.569256216650107	0.42710649829977	0.794036184519232
Merged-chr9-61374571-4	chr9	61373992	61374992	+	756.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083928, intron 2 of 19)	intron (NM_001083928, intron 2 of 19)	2126.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	3.57645497821411	3.59274895909766	3.5734067403581	3.6972478343062	3.68334556223546	3.94409584354003	0.650387115545573	0.235356898729766	0.631549225747722
Merged-chr14-55161489-4	chr14	55160977	55161977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44542.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	2.5400461064434	2.13769436326925	2.52613879979507	2.51012586362114	2.44252577110434	2.60038878362419	0.617510795131522	0.494735207939388	1
Merged-chr1-34028943-4	chr1	34028448	34029448	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134448, intron 1 of 97)	L1MEc|LINE|L1	17123.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.57431802508161	6.47004605372821	6.19171569100847	6.75777829636209	6.39285965291238	6.37812249002334	0.149035595729277	0.611991688408445	0.886473391147181
Merged-chr14-120359827-3	chr14	120359328	120360328	+	685.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53376.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.45636035537919	3.56232771502046	3.66816514485935	3.34780328220131	3.3253552490112	3.42557355772623	-0.752370399670381	0.199288369184902	0.587694450777479
Merged-chr17-79661592-4	chr17	79661147	79662147	+	815.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	46747.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	4.56889005993987	4.44157422949377	4.18388889486263	4.33103603902075	4.50530968350293	4.25401402054969	-0.105223452000183	0.819878420914867	0.957355946345198
Merged-chr18-31632658-2	chr18	31632158	31633158	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1710.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	2.01989780778934	2.07328828197519	2.11288821935402	1.79409536786536	1.75662865258776	1.77730286375893	-3.03757625111724	0.00988760600055104	1
Merged-chr2-160872673-3	chr2	160872191	160873191	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177263, intron 1 of 3)	CpG	299.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	6.3010612439246	5.9162892506999	6.01249671743794	6.17242068688425	5.7529959556569	5.88151567856739	-0.249880261928551	0.43776819462181	0.800216778536452
Merged-chr16-13819256-4	chr16	13818773	13819773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	22.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	7.45975006870061	7.91088055562409	7.73548553471725	7.94880226835925	8.15407362047273	7.7022028854209	0.341303387738281	0.182173731551063	0.56487094670769
Merged-chr3-108257036-4	chr3	108256518	108257518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	92.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	7.23686162256838	7.50135919644956	7.09279797173594	7.42663596413282	7.57688454841243	7.39148969100329	0.257593138908472	0.298796369159649	0.695489982940998
Merged-chr2-26921959-2	chr2	26921459	26922459	+	767.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011512, exon 6 of 6)	exon (NM_011512, exon 6 of 6)	-5429.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	3.85174435132576	3.78219638141433	4.33698980812422	3.86228338903312	3.92929760654611	4.0667014572229	-0.150729807654419	0.778884495986519	0.945559341758022
Merged-chr15-75021538-3	chr15	75021038	75022038	+	987.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23507.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	3.02726605431743	2.94826967567418	3.07428249794125	3.4135789362794	3.39574906324242	3.83142185665227	2.28048641191563	0.000793219467938675	0.015078317864377
Merged-chr13-100402041-3	chr13	100401536	100402536	+	797.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	50828.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	3.6760751439373	3.93162427043623	3.74966307200265	3.74917677626108	4.3633349589012	4.02618927028248	0.862564245250469	0.120835107063349	0.464924053848477
Merged-chr8-88298164-4	chr8	88297671	88298671	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	3967.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.72832671560772	5.63997877693163	5.74323198650286	5.67389153278847	5.70499931896054	5.94800428428293	0.128363502536889	0.6820635247847	0.914930546030715
Merged-chr9-7837922-1	chr9	7837422	7838422	+	1000.0	f0_c57.idr	promoter-TSS (NM_007465)	promoter-TSS (NM_007465)	-865.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	7.95017821964027	8.28588191963037	7.58788253077019	8.31406254271445	8.45665789221746	7.96167317412461	0.400110640547662	0.149267929499511	0.51555709093833
Merged-chr3-96052124-3	chr3	96051665	96052665	+	792.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013841, intron 3 of 14)	intron (NM_013841, intron 3 of 14)	6290.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	1.98815484151225	1.88801536720457	2.17359584909401	1.85197836584227	1.79324629890281	1.85615439544599	-1.67763846435898	0.100325033803223	1
Merged-chr5-105662066-4	chr5	105661538	105662538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37931.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	6.82236377439894	6.71070507595518	6.53868525050902	5.03564180043597	4.80445587240542	5.28610085518514	-3.08435566712004	3.80672946097e-20	2.59631430318354e-17
Merged-chr14-57999247-4	chr14	57998684	57999684	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028643)	promoter-TSS (NM_028643)	78.0	NM_028643	68514.0	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	5.50423237469362	5.53041354435611	5.32457484427116	5.71820381451306	5.18955301674041	5.25624019552277	-0.0974563997924678	0.790112358475172	0.949368241827272
Merged-chr2-169934565-4	chr2	169934073	169935073	+	940.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28614.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	3.72957950753412	3.6118251348252	3.62377943142624	3.67717466086295	3.31560871729694	3.64140370276663	-0.384716643895234	0.507137811444771	0.838858202423196
Merged-chr12-102425523-4	chr12	102424999	102425999	+	812.950012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	B3A|SINE|B2	14314.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.64579842907041	6.6975068870059	6.71993864522367	6.70022176708019	6.76192302099611	6.54460097308798	-0.0108407685544626	0.966177278270709	0.992263863114864
Merged-chr14-63129170-4	chr14	63128676	63129676	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6714.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.30364880914522	8.13507615212981	7.68096589661422	8.05439358695437	8.46174199866458	7.97235283750506	0.160925197150259	0.555786211616752	0.863391876784472
Merged-chr11-113777362-3	chr11	113776873	113777873	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25558.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.45746417504428	3.28216948950595	3.47441735871102	3.67559341640074	3.59633854281261	3.80307050512481	1.03312784307885	0.0729891788361336	0.3550174544103
Merged-chr2-71453267-4	chr2	71452767	71453767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025633)	promoter-TSS (NM_025633)	-71.0	NM_025633	66559.0	Mm.152796	NM_025633	ENSMUSG00000041921	Metap1d	2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding	5.29313534970218	5.12965828030885	5.32121921559261	5.13525758646259	4.55286351261868	4.75871537627489	-0.87847598159785	0.0315411677063418	0.215142077237881
Merged-chr15-36499592-2	chr15	36499092	36500092	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2801.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	3.50426449446469	3.33898677944457	3.48286187870182	3.07420976341359	3.24215748173385	3.44749237722121	-0.729115727554085	0.246044266796902	0.643182480464067
Merged-chr10-20311586-4	chr10	20311078	20312078	+	861.116699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-891.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	7.95515462668278	8.59474387564114	8.06822879312437	8.04774955225802	8.59326942717029	8.10976296421884	0.0522126051482896	0.854914240640756	0.966038421653227
Merged-chr13-101664166-4	chr13	101663655	101664655	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28475.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.56132303684043	4.18705273077036	4.07830326865321	4.48356116618173	4.06785034105089	3.99079655900356	-0.259383215705613	0.616672991290157	0.888421011873208
Merged-chr1-180972358-4	chr1	180971862	180972862	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 20 of 22)	intron (NM_144794, intron 20 of 22)	29844.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	6.05431603273521	5.74929787499969	5.58938026926773	5.88238105667954	5.9536058068558	6.03567095022476	0.234235117939739	0.463559166363949	0.815989657601258
Merged-chr5-25221852-3	chr5	25221354	25222354	+	848.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1018.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	3.68475196788112	3.73972038021253	3.88835086895859	3.82184153355127	3.58877505520801	3.81062870583214	-0.098339672079765	0.855089077038216	0.966059905720255
Merged-chr17-84349134-2	chr17	84348634	84349634	+	686.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	117074.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	2.34854187246393	2.27804811790262	2.45620120756281	2.28734989614705	2.14416584336068	2.33963558758578	-0.712475700816496	0.40560910118758	1
Merged-chr10-19508179-3	chr10	19507672	19508672	+	942.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_152784)	TTS (NR_152784)	13529.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	3.01797974567285	3.04772607582259	3.34570595901512	2.73885562039792	2.84980658864762	2.91680135718247	-1.45948492581745	0.0429537389691868	0.259915257955647
Merged-chr17-64593546-2	chr17	64593046	64594046	+	706.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR67B|LTR|ERVL	-8103.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	4.18587467266043	4.22995426502314	4.45829750313868	4.19597427894004	4.12829100178156	4.4035453118614	-0.136115424868283	0.770798105741947	0.94345245755247
Merged-chr10-128494714-2	chr10	128494214	128495214	+	891.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-828.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	6.39114672642543	6.29765455562113	6.59637410810218	6.66304232953252	6.56697909263377	6.63899306827117	0.316425118775309	0.236489578536588	0.632745673713476
Merged-chr5-67295824-3	chr5	67295287	67296287	+	857.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11168.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	4.18369652545978	4.30568903703506	4.44074389912166	5.41916683999677	5.40959930421991	5.54575364144585	2.63642978807037	1.20897089466504e-10	1.59930127509203e-08
Merged-chr5-148548720-3	chr5	148548191	148549191	+	856.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	2982.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	6.32487283033596	6.15070924909184	6.34588113208462	6.73038840690443	7.0136267002281	6.6073012882567	0.854744977422589	0.00213485931876668	0.0324451825015412
Merged-chr1-152511457-4	chr1	152510947	152511947	+	960.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177756)	TTS (NM_177756)	111580.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	2.46712164519859	2.56814234201837	2.69909923526292	2.66304181301336	2.36385965911592	2.77230327374362	0.158338787616724	0.844970020091895	1
Merged-chr11-77318921-3	chr11	77318418	77319418	+	748.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 1 of 14)	RMER6A|LTR|ERVK	-29362.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	4.13173166424799	4.11895849733072	4.25960209564351	4.2271826884236	4.15105264625315	4.41121640597633	0.255444524426492	0.583338715796587	0.87400013033251
Merged-chr6-5379296-4	chr6	5378807	5379807	+	857.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4079.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.70794798785818	3.39749348497741	3.7772651639957	4.10004648756747	4.07771902979519	4.22444479722642	1.59719953633393	0.0034327814973534	0.0465582531103149
Merged-chr11-69778149-4	chr11	69777661	69778661	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	12249.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	4.07404286688971	3.7842450871918	4.24869542138833	3.89109528347861	3.89821719269442	4.18803500268768	-0.145620904489241	0.780677265195634	0.946078518476608
Merged-chr1-88308064-2	chr1	88307564	88308564	+	937.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134252, intron 2 of 26)	intron (NM_134252, intron 2 of 26)	1352.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.2394071918803	3.61522014914761	3.77859918273821	3.24694193031185	3.25312863100412	4.06217090939379	0.0634270237763545	0.92813890940594	0.983802612059568
Merged-chr17-80131622-3	chr17	80131110	80132110	+	913.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	4139.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	4.67626213369796	4.51560181947849	3.9167709974879	4.48334627359723	4.51407788307595	4.26295296065974	0.0259424251374211	0.960348796043172	0.990380695859216
Merged-chr14-20803708-4	chr14	20803150	20804150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9411.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	4.35468319032835	4.38512144582326	3.95773036313091	4.33560042684977	4.10939115813529	4.08223259461021	-0.205262638119741	0.678283605744129	0.913379457468915
Merged-chr6-116439711-3	chr6	116439217	116440217	+	896.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21461.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	4.61851510342894	4.84219504303538	4.77614112715728	4.39234795356399	4.36146494557115	4.528018498357	-0.798314088932491	0.0583172751871637	0.312055552011159
Merged-chr11-68408325-4	chr11	68407826	68408826	+	801.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21500.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	3.58924360860867	3.81278782290474	3.38664126108845	3.5911817466491	3.14800292770528	3.07506424119749	-1.18561003983319	0.0868060394229422	0.390355117463021
Merged-chr3-96820310-2	chr3	96819810	96820810	+	641.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163497, intron 1 of 3)	intron (NM_001163497, intron 1 of 3)	-5789.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	3.01016152885505	3.19321481648176	3.03772341466357	3.14982631493178	3.04851245255969	3.44415465541031	0.562735867658611	0.399958814818982	0.776277041903801
Merged-chr19-47405730-4	chr19	47405238	47406238	+	762.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	G-rich|Low_complexity|Low_complexity	58673.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.47736748512959	5.29091439953479	5.16856404766786	5.17237774741498	5.35533959996704	5.4226140933792	-0.0149650030023603	0.966195590776037	0.992263863114864
Merged-chr10-14959288-4	chr10	14958796	14959796	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	199007.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	5.79113073564172	5.87477736971768	5.66154408688652	5.42304904095636	5.57828800359513	4.81098900094999	-0.848857006787161	0.0324194854769744	0.218833499437664
Merged-chr10-127606680-1	chr10	127606180	127607180	+	598.0	f0_balb.idr	intron (NM_008512, intron 4 of 88)	B3|SINE|B2	14468.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.18056606096909	7.07583555033913	7.30710966543242	6.91488313990359	6.74015527335461	6.89383453746666	-0.517018887274118	0.0357641936366436	0.232435134274611
Merged-chr7-141409074-4	chr7	141408553	141409553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172116, intron 7 of 7)	intron (NM_172116, intron 7 of 7)	5072.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	3.55157590088477	3.36150394921343	3.13006017049502	3.16608115801626	3.1627940154717	3.6944780735117	-0.00237470654811614	0.997222312312676	0.999396270645852
Merged-chr11-85123629-7	chr11	85123145	85124145	+	884.4761960000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029934, intron 1 of 33)	B1_Mur1|SINE|Alu	16310.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	5.90536380038405	6.07685371457723	5.7388594187458	6.09501974975765	6.15016401900469	6.07344988829945	0.317315671480759	0.28831751308756	0.685731702986699
Merged-chr13-10540366-4	chr13	10539860	10540860	+	655.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-179557.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	2.27021603964216	2.36420907266329	2.44879110101452	2.1201854718035	2.19868512079454	2.39770236171204	-0.823089747849951	0.347442256184493	1
Merged-chr3-61321868-4	chr3	61321387	61322387	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42620.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.43992672609702	3.32632925716794	3.39250388446316	3.56176154140021	3.35456070927184	3.57227578352589	0.406048648227945	0.490223954301457	0.830042606694236
Merged-chr19-41445871-4	chr19	41445348	41446348	+	977.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60778.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	6.14441533814208	6.15422443556835	6.07130140112615	5.91665512605995	5.98533240953363	5.67939627503685	-0.428669615028388	0.151872570407888	0.519634796559235
Merged-chr12-52605481-4	chr12	52604953	52605953	+	738.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3131.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	6.92854991652152	7.47198189757551	6.89479982685526	6.95117096078579	7.37431883885202	6.96788556306115	-0.0217905899261295	0.941882488831547	0.987067319874248
Merged-chr5-35575073-4	chr5	35574553	35575553	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030208)	promoter-TSS (NM_030208)	17.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	7.2321504238039	7.36647738453167	7.54144302226745	7.51438191302927	7.44389413600089	7.40749808244451	0.113372225075761	0.627703724865736	0.893339236443994
Merged-chr5-142926539-4	chr5	142926040	142927040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19786.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.83624414565398	6.04311701318013	6.17127557011851	6.29071193857697	6.51297980898131	6.73130780248613	0.834859266326244	0.00522245610873814	0.0630330907884948
Merged-chr18-82469532-3	chr18	82469027	82470027	+	697.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5596.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	2.65447484427057	2.9757547742682	2.98704797812336	2.58615939484691	2.47553544766749	2.70295435542387	-1.65022587259569	0.0389200809462763	0.244652269802656
Merged-chr12-3841028-2	chr12	3840528	3841528	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	21216.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.0291170022443	3.09731496800677	3.02101593579414	3.13186439095938	3.2534960834569	3.21216377630246	0.655012616147367	0.309798906583644	0.705462734304293
Merged-chr13-13954475-4	chr13	13953971	13954971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362404)	promoter-TSS (NM_001362404)	-203.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	6.22926677476858	6.38983694592266	6.38808056782279	6.25107277880739	6.02565141078164	6.08223741800912	-0.358982367563524	0.204535853838122	0.595133032351732
Merged-chr1-191391512-4	chr1	191391034	191392034	+	864.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	5507.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	3.317657656773	3.3839870783389	3.3986708476104	3.65836928329551	3.65530300551983	3.73733063658937	1.1600905818775	0.0425036408060378	0.258432074840248
Merged-chr13-44469852-4	chr13	44469263	44470263	+	885.3250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30036.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.07012276215199	2.68106934738949	2.96167592261234	3.03543564809882	3.20803744249342	3.3737956069871	1.33221981681442	0.0684743156878017	0.342260518997453
Merged-chr19-32595801-4	chr19	32595290	32596290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	75.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	4.49590283780883	4.42627755142725	4.384052798155	4.72254807115326	4.62252915235602	4.58270502174412	0.506214693277512	0.227650554910656	0.622808210644087
Merged-chr2-14233136-4	chr2	14232623	14233623	+	954.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	L2c|LINE|L2	3709.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	7.22045558059025	7.38145293433179	6.91364429460777	7.14402433164611	7.64333624438523	7.07245227651599	0.193181954250989	0.504174090611935	0.83751412120853
Merged-chr6-96114499-1	chr6	96113999	96114999	+	572.0	f0_balb.idr	intron (NM_182808, intron 1 of 4)	intron (NM_182808, intron 1 of 4)	1345.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	3.46353217149528	3.54288254407536	3.5999458094996	3.32618357459486	3.28047681606332	3.4034063027975	-0.770025807568353	0.190750939460818	0.577285852673513
Merged-chr19-53313326-4	chr19	53312779	53313779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360348, intron 1 of 5)	CpG	1834.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	8.62726359674006	8.71134735353527	8.30949100608277	8.17071706929247	8.36098464407252	8.20386766958316	-0.439736038085416	0.0505072919968311	0.286125459727146
Merged-chr5-30009542-2	chr5	30009042	30010042	+	890.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3572.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.74584500844911	4.97537440223312	5.05262501164294	5.22982105096508	5.41950627872246	5.61582112862442	1.02970136332068	0.00580181089395377	0.0680760654321009
Merged-chr14-69090071-2	chr14	69089571	69090571	+	648.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	60782.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	4.94320816770308	5.03094757402299	4.66269392102374	4.71859110259033	4.62727367177567	5.06230239297018	-0.209618748418307	0.615199847031005	0.887855829471895
Merged-chr15-63978218-3	chr15	63977721	63978721	+	887.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	MTC|LTR|ERVL-MaLR	19845.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.18850521327197	3.10736337121831	3.33900803198166	3.34736748196924	3.2546075744433	3.56612806854109	0.721790169761217	0.248793361521135	0.645819769301048
Merged-chr7-137411631-4	chr7	137411147	137412147	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-891.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	8.21935475247481	8.50201552989349	8.12508433879847	8.20822762487325	8.63717967977377	8.37332547773135	0.175620834743111	0.465822748120555	0.817215071372066
Merged-chr14-73433679-4	chr14	73433172	73434172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48383.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	6.7714589297635	6.8229939579744	6.80878535087904	6.86240974009455	6.92803588035993	7.02072864308841	0.208153026998913	0.39412180472217	0.77206906441863
Merged-chr5-31242196-1	chr5	31241696	31242696	+	727.0	f1_c57bl6.idr	intron (NM_147201, intron 1 of 17)	intron (NM_147201, intron 1 of 17)	1278.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	4.06617851044526	4.31840657665476	4.07293409767374	4.18265873620365	4.05735778389918	4.18941996434209	-0.0660341697103621	0.890436436770055	0.974528422443459
Merged-chr10-30719012-6	chr10	30718494	30719494	+	958.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-63127.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.33420850985483	5.15516678869693	5.24414232513032	5.26776605098553	5.64384968975519	5.34038577756693	0.380027857088035	0.285553573183873	0.683102139478588
Merged-chr2-25497390-2	chr2	25496890	25497890	+	822.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3116.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	4.85019380651667	4.93946019046581	5.06208488586621	4.90804391974456	4.74139048012376	5.18895572438557	-0.00529545870410672	0.989319472039599	0.997591975441369
Merged-chr12-34433135-4	chr12	34432615	34433615	+	993.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024124, exon 4 of 12)	exon (NM_024124, exon 4 of 12)	95774.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.58359185882876	5.7904162509391	5.85452111243628	5.47609132076932	5.82804180891657	6.06937341852487	0.115229790635695	0.734794587517723	0.932617455907478
Merged-chr7-102012611-2	chr7	102012111	102013111	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133947, intron 20 of 24)	intron (NM_133947, intron 20 of 24)	5544.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	4.13350122089085	4.36454804656594	4.81552613406168	4.36187837538067	4.4065184572214	4.51462400303013	-0.0777346164120524	0.871449283302383	0.970222087171093
Merged-chr15-100738383-2	chr15	100737883	100738883	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5646.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	4.52986593587679	4.03718292012295	5.03836398055414	4.62625713875711	4.27039184831284	4.4683718956589	-0.322063763720338	0.542155062834764	0.857034750433211
Merged-chr1-60973768-3	chr1	60973255	60974255	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4159.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.96926346869727	5.58930663764869	5.79670128757804	5.67164321861763	5.42238500538411	5.73230178326213	-0.345734985124401	0.299813590541753	0.696509736767405
Merged-chr15-93519111-4	chr15	93518600	93519600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033217, intron 1 of 7)	CpG	76791.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	2.62440869733569	2.5176883511123	2.73563008815586	2.50169936203581	2.38057764854004	2.6270129012962	-0.732987824909436	0.356370862021469	1
Merged-chr4-16170452-3	chr4	16170034	16171034	+	826.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045765, intron 1 of 6)	RLTR16|LTR|ERVK	6424.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	3.07112330043652	3.09977319658379	3.35020122639331	2.94776989653089	3.03173252558175	2.84051564136582	-1.02772564187285	0.141482308819966	0.502183459290427
Merged-chr1-54925805-6	chr1	54925324	54926324	+	955.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	CpG	563.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	7.4547685596188	7.48827603243275	7.52130402531786	7.14357396832559	6.92291464650358	7.11591744787462	-0.63875246517857	0.00633637982698854	0.0727290910024665
Merged-chr17-83732962-4	chr17	83732469	83733469	+	973.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054082, intron 3 of 16)	B3A|SINE|B2	26806.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	6.65148086876292	6.81157658009442	6.68716040079624	6.5232643126949	6.84701575336242	6.76158982550127	0.00074747617708709	0.997740789050635	0.999535504317229
Merged-chr7-66060534-4	chr7	66060046	66061046	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152094, exon 1 of 8)	non-coding (NR_152094, exon 1 of 8)	210.0	NM_021336	68981.0	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	5.40117634124887	5.99066967927593	5.5820388554776	5.3092954722616	4.93019664748742	5.2875315501345	-0.989567523526407	0.0094566390770029	0.0967194161768231
Merged-chr14-66243657-2	chr14	66243157	66244157	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	B4A|SINE|B4	-29833.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.57122651984665	5.52776597291254	5.9093893203353	5.61932670343581	5.85328241237935	5.94758597240627	0.259848485231849	0.430949856178437	0.796614699034595
Merged-chr9-53010919-3	chr9	53010407	53011407	+	923.711121	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR44B|LTR|ERVK	237205.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	4.22553824665133	4.13699530784992	3.94332992095886	3.82088219977602	3.60092025128451	4.06130955607994	-0.863827794450345	0.105366065969662	0.433316839677932
Merged-chr1-161072478-1	chr1	161071978	161072978	+	612.0	f1_c57bl6.idr	intron (NM_001159930, intron 1 of 4)	intron (NM_001159930, intron 1 of 4)	1711.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	2.6648328923593	2.70473125376651	2.53025233386131	2.63899818359011	2.42551131250334	2.73176590105754	-0.214756605341615	0.785635300972582	1
Merged-chr8-119427626-2	chr8	119427126	119428126	+	651.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9536.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	2.88965782017616	2.75216380203077	2.9185427721976	2.90368193490617	2.55405199826771	2.68087077319516	-0.696297601195732	0.35864693216069	0.74501115798572
Merged-chr9-7185440-2	chr9	7184940	7185940	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029775, intron 1 of 7)	intron (NM_029775, intron 1 of 7)	935.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	4.97720172740622	4.85859027555359	4.68482146726048	5.16976499676413	4.73452729698729	4.83366065521614	0.160256689680753	0.695447068949252	0.919289041383579
Merged-chr16-27436710-3	chr16	27436258	27437258	+	896.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025615, intron 7 of 9)	intron (NM_001025615, intron 7 of 9)	47802.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	4.5164583613568	4.49225675797228	4.38928665316095	4.46539220678249	4.22959793568949	4.3680688397694	-0.303781597911572	0.490469507315515	0.830053405840466
Merged-chr11-16988037-4	chr11	16987541	16988541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019549, intron 5 of 9)	intron (NM_019549, intron 5 of 9)	20677.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	6.32794352718969	6.2027809605812	6.13095036542355	6.32408647128924	6.0342099667379	6.00937679960699	-0.160903709302925	0.582558378145063	0.87378634860748
Merged-chr13-35906099-4	chr13	35905667	35906667	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145938, intron 1 of 7)	CpG	180.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	6.08285483051165	6.05276894258655	6.11284313917932	5.86570325108477	5.73832249730231	5.82722278860113	-0.479860426268198	0.101258013194677	0.424414505435358
Merged-chr8-128701150-3	chr8	128700646	128701646	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	Lx3_Mus|LINE|L1	15492.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.56126036694553	3.55271601716315	3.81330691707948	3.56759822056567	3.64835865706199	3.78548015633491	0.0907395715118144	0.870330725701003	0.970065609722504
Merged-chr11-79524362-2	chr11	79523862	79524862	+	608.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	-600.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	6.37371577472793	6.78417899215122	6.9498603194113	6.88530868344302	7.11310026394831	6.89787276828221	0.397125141986024	0.162413764857685	0.535842287006085
Merged-chr2-167802791-4	chr2	167802270	167803270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	111593.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.79968825607132	7.35375037145611	7.3090443363787	7.62291676586561	7.87108241532864	7.20586495977548	0.134441039827388	0.642811991384142	0.899532469670737
Merged-chr16-23993402-4	chr16	23992893	23993893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4541.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	4.24549780656235	3.70948823504375	4.00809261469647	3.66684081193632	3.67407401332846	3.83244772455512	-0.899519794794802	0.103335924839164	0.428463201325997
Merged-chr5-31512683-4	chr5	31512189	31513189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133756, exon 14 of 14)	3' UTR (NM_133756, exon 14 of 14)	14073.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	4.71513347165147	4.49396372629882	4.85832556213927	4.5002811965314	4.59348674204013	4.81686499806304	-0.125540469270299	0.767784821775839	0.942700046486211
Merged-chr1-93072619-4	chr1	93072130	93073130	+	951.716675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 8 of 46)	intron (NM_001294150, intron 8 of 46)	9850.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	4.47328472521223	4.36479969048784	4.50696450624091	4.4864707689874	4.20489429391202	4.36087628857458	-0.247179073175679	0.578675759703374	0.872437129840066
Merged-chr8-13642806-1	chr8	13642306	13643306	+	584.0	f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	34781.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	2.67251044548432	2.6562362647248	2.90016943878412	2.54830549977169	2.2823359922897	2.67791662591852	-1.38439929909075	0.10546258363603	0.433456688524908
Merged-chr11-69418990-4	chr11	69418478	69419478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5303.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.21967859630301	8.14924912489267	7.65527955351675	8.09410861318156	8.18911915592599	7.65268858802603	-0.0459715394625465	0.866425840429738	0.969012504609977
Merged-chr7-5098185-2	chr7	5097685	5098685	+	751.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001252454)	TTS (NM_001252454)	17950.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	2.69604619778015	2.85145029925689	3.20222385604667	2.80217518982637	2.74001778202757	2.95021039710362	-0.487188398328875	0.514525701963861	0.843107848235413
Merged-chr9-96350239-4	chr9	96349748	96350748	+	860.616699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	13467.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	3.49711054968148	3.33159809661626	3.42422878420082	3.34899141245285	3.31045893882533	3.54739923440454	-0.0750544381101299	0.899738050938941	0.976696214864058
Merged-chr1-95451108-4	chr1	95450629	95451629	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	137501.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.63285222512454	4.77730085801543	4.94556154438738	4.4217797568982	4.75070910497865	4.97599098327911	-0.126767142230737	0.768411971400774	0.942871018290895
Merged-chr4-3080547-2	chr4	3080047	3081047	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91536.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	2.58978950267477	2.69102887268295	2.79029481861503	2.39584899936303	2.34605210556696	2.5595986357499	-1.61451177444311	0.0506616354940464	1
Merged-chr7-99440380-1	chr7	99439880	99440880	+	583.0	f0_balb.idr	intron (NM_201352, intron 5 of 17)	intron (NM_201352, intron 5 of 17)	-25624.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	3.05680843932231	3.20627617749521	3.48638327448632	2.93262022229915	3.18024518767239	3.1272420364917	-0.717600163685762	0.292079045397111	0.689330051945222
Merged-chr4-62661717-4	chr4	62661221	62662221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-12253.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.30278554199091	4.75476001364027	4.85714466684151	5.38358027836095	4.82826460276593	5.47577264374896	0.520386172542316	0.233093682791964	0.629491388067694
Merged-chr11-83224007-1	chr11	83223507	83224507	+	624.0	f0_c57.idr	intron (NR_015519, intron 1 of 3)	intron (NR_015519, intron 1 of 3)	431.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	7.57465422664843	7.59487700965177	7.34747321358939	7.68007462320652	7.66311655149141	7.37053496582884	0.100780777036616	0.673225103933576	0.911316508290439
Merged-chr17-56885597-2	chr17	56885097	56886097	+	542.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030141, intron 12 of 13)	intron (NM_030141, intron 12 of 13)	9964.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	2.45553886577448	2.52445634891469	2.62398608773138	2.69376975033248	2.38557218786577	2.7585858080823	0.480043399516509	0.549505777545131	1
Merged-chr6-117817193-4	chr6	117816693	117817693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23988.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	5.6232846084693	5.78647181069861	5.91920237880333	5.14143692016152	5.18817040337549	5.04165596727183	-1.24564978181206	0.000305613386897685	0.00708342024985587
Merged-chr3-116597327-2	chr3	116596871	116597871	+	641.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030016, intron 1 of 11)	URR1B|DNA|hAT-Charlie	2413.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	3.8369409976524	3.71962403701414	3.6935396613524	3.59585099490995	3.76677618981698	3.54369692550113	-0.358540996835477	0.515799588912994	0.843966720312586
Merged-chr2-93334027-1	chr2	93333527	93334527	+	699.0	f0_balb.idr	intron (NM_183180, intron 1 of 9)	CpG	460.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	4.12434424832745	3.64470150536213	3.84131809588392	3.92018123534112	3.54220711427025	3.46356948815963	-0.734965609518571	0.217642499874526	0.611645289860174
Merged-chr2-167844194-4	chr2	167843700	167844700	+	945.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88127.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	5.5405189098638	5.45649349914651	5.00180628867064	5.65766753600727	5.3648018814826	5.50923259954362	0.278994459417044	0.449889830498836	0.808013574003465
Merged-chr2-160363351-3	chr2	160362851	160363851	+	973.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010658)	TTS (NM_010658)	3714.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.87096147570829	5.84189102592264	5.73259525900314	5.88904485153433	5.9245374125217	5.6856084510155	0.0443707748982268	0.884802022914556	0.973538624783452
Merged-chr11-103361593-4	chr11	103361102	103362102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205236, intron 2 of 17)	intron (NM_001205236, intron 2 of 17)	2090.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.41693314375074	7.70579379148181	7.43926896106227	7.51201526854778	7.76883440471333	7.29366300388523	0.0266831177683233	0.916901782232318	0.981431795618389
Merged-chr15-67514694-2	chr15	67514194	67515194	+	627.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	287925.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.0623751723852	5.02359782064853	4.79761799351907	4.84647558159509	4.96512246401455	4.86406123375948	-0.170524947387767	0.656661150349858	0.904693205515276
Merged-chr4-86657364-4	chr4	86656851	86657851	+	894.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007408, exon 8 of 8)	exon (NM_007408, exon 8 of 8)	12708.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.66979254759784	4.8105804156105	5.17793897313776	4.9944213240248	5.08008945116796	4.86776585987766	0.21695533225835	0.590734710405838	0.877301111216348
Merged-chr4-43508295-2	chr4	43507795	43508795	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001013377, intron 1 of 11)	intron (NM_001013377, intron 1 of 11)	452.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	4.62002519990497	4.43287186419164	4.68886448635165	4.81968497346156	4.38001041300439	4.79175026707913	0.216342773294014	0.622774652005772	0.891249034616027
Merged-chr6-54810246-2	chr6	54809746	54810746	+	678.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6670.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	3.61609571576575	3.85519497048181	3.76419555548824	3.56752934633201	3.66704892304854	3.45235083305992	-0.605492765773118	0.28414918348269	0.681879369534166
Merged-chr16-94627475-2	chr16	94626975	94627975	+	690.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	16056.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	3.84151274445835	3.88735969698284	3.95620479953067	3.93093375900806	3.66491213287234	4.20317798417567	0.143445633800294	0.789013669422405	0.949092571737679
Merged-chr19-6398642-2	chr19	6398142	6399142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_011224)	TTS (NM_011224)	-1941.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	3.34568054005049	2.87115922710362	2.83553694499051	3.20644581377917	2.85197871021552	3.27696252149144	0.347852316046704	0.64630638225398	0.900976246381167
Merged-chr3-108865321-4	chr3	108864806	108865806	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24702.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	5.75031410531528	5.55095283890712	5.92218854060836	5.70255325809773	5.68136591678162	5.98273676081164	0.0837074412571334	0.797221769587364	0.951678829711438
Merged-chr16-45122699-1	chr16	45122199	45123199	+	787.0	f0_balb.idr	intron (NM_026439, intron 5 of 7)	intron (NM_026439, intron 5 of 7)	28688.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	2.23922313221591	2.29092349784225	2.34058640613722	2.02063646752115	2.10182785439188	2.08559672690432	-1.67348073833035	0.073427690384083	1
Merged-chr16-77282215-2	chr16	77281715	77282715	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-47113.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	2.68194786444767	2.57425711006755	2.64779175707565	2.64283029966661	2.5584974870015	2.95836980881064	0.483077383475482	0.529898425448223	0.85106707928144
Merged-chr2-31763468-4	chr2	31762973	31763973	+	996.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	3300.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	6.71155821477055	6.57343135073921	6.75010536369378	6.67067190665404	6.83865504894384	6.52647234409627	0.0288138082466596	0.91319365798214	0.980560320145079
Merged-chr1-136415351-4	chr1	136414922	136415922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	97.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	8.63349170250167	8.79811622124104	8.40211908712056	8.53193279713082	8.56473417998654	8.37415319686713	-0.181127710391505	0.411066730395457	0.783840094880781
Merged-chr11-101963959-6	chr11	101963474	101964474	+	960.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_024449, exon 2 of 2)	exon (NM_024449, exon 2 of 2)	3041.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	5.07948757438338	4.71518562789645	4.37472529138386	4.95894178751978	4.93103460208452	4.44647967738096	0.0936520812098826	0.844150388645587	0.963711687630021
Merged-chr10-19563544-2	chr10	19563044	19564044	+	932.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28405.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	3.28492068392242	3.07778987956817	3.53261304413841	3.30091926754187	3.4369763163483	3.44657588424834	0.361881269893556	0.566826646990983	0.867634455258659
Merged-chr1-93668939-4	chr1	93668449	93669449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16626.0	NM_016778	51800.0	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	3.16518524054978	3.05311404322198	3.52068826110098	3.24183282654774	3.29859611998509	3.3290620621861	0.149218072672313	0.817445911532164	0.956767881392089
Merged-chr6-28421723-4	chr6	28421230	28422230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-6.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	7.17688290577567	7.47454286254606	7.39737393791768	7.40987117152803	7.5163391716856	7.05618366547298	-0.00460743388332825	0.985781739326799	0.996966634617303
Merged-chr16-32099767-4	chr16	32099264	32100264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025892)	promoter-TSS (NM_025892)	-37.0	NM_024464	72084.0	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	6.19099389573079	5.96951786367889	6.1394629230856	5.87575178714187	5.85512683632566	6.00471530596819	-0.337328474174619	0.252673151209124	0.65000548974521
Merged-chr8-36953252-6	chr8	36952763	36953763	+	693.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	-821.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.3499957214423	5.497087078434	5.21093945050908	5.45663576069833	5.26828415805514	5.57730357029117	0.124424577932971	0.721580347242805	0.928538399090986
Merged-chr5-124482776-4	chr5	124482227	124483227	+	773.133301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029532)	promoter-TSS (NM_029532)	-428.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	7.93229318921109	8.20117927911063	7.84742396422826	8.01680965175931	8.40288101658999	7.97604654270787	0.206920451681963	0.403273978836718	0.778715305540499
Merged-chr9-95513048-1	chr9	95512548	95513548	+	826.0	f1_c57bl6.idr	Intergenic	Intergenic	-1052.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	6.6156460017429	6.48397330443438	6.10023904741653	6.81089164200404	6.76081541125112	6.01124299667526	0.258482018149234	0.453813222271461	0.809979841654596
Merged-chr2-58161128-4	chr2	58160646	58161646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1024.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	6.75520470472212	6.83904701381142	6.94744882863542	6.32917907453466	6.43296512600461	6.24014463849734	-0.798699818893778	0.00255572047915485	0.0373270771310815
Merged-chr11-62556381-1	chr11	62555881	62556881	+	812.666687	f0_balb.idr	Intergenic	URR1B|DNA|hAT-Charlie	4650.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	3.93296083229582	3.85828395935903	4.06740719385265	4.07678277286946	3.6081100744687	4.08988520697158	-0.0465788973548648	0.931399876516998	0.984877393921712
Merged-chr8-34963233-1	chr8	34962733	34963733	+	604.666687	f0_balb.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	2457.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.22969028623398	3.36384886776874	3.13676194163263	3.0543086302827	3.1545964265251	3.20910309320137	-0.473719971901204	0.460361907874014	0.814477170345238
Merged-chr15-25407375-4	chr15	25406858	25407858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	6406.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.36241428512786	4.35320944735812	4.02283719754172	4.67265860709329	4.51880894587655	4.34758222848321	0.660578563311162	0.158349421826216	0.530090871069993
Merged-chr19-44384650-4	chr19	44384155	44385155	+	966.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	23054.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.93967337905184	5.77551493081649	5.95983948336258	6.12391349627775	5.80908364537867	5.74694759538712	0.0290912910838029	0.926039817891293	0.983305773102619
Merged-chr13-9276571-4	chr13	9276068	9277068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081426)	promoter-TSS (NM_001081426)	43.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	7.66636188066603	7.63890670307784	7.23581804967657	7.56626621432612	7.35776143513684	7.0412308639381	-0.277681377811113	0.305501674336449	0.701604675920959
Merged-chr7-143070390-2	chr7	143069884	143070884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001115085, exon 3 of 3)	exon (NM_001115085, exon 3 of 3)	1016.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	2.95094028201159	2.80941158864376	3.11644353781982	3.01073383891377	3.11901521053272	3.13127857082708	0.595418723004051	0.381176244694713	0.763032822617589
Merged-chr2-83724412-4	chr2	83723917	83724917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	20.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	7.20699981474604	7.21179840066016	7.25332449828815	7.18046606406088	7.09535789809678	7.26500456742599	-0.0686903479559325	0.767358335667848	0.942617496111852
Merged-chr3-88142658-1	chr3	88142158	88143158	+	1000.0	f0_c57.idr	5' UTR (NM_133665, exon 1 of 11)	5' UTR (NM_133665, exon 1 of 11)	286.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	8.80724595571822	8.45131533464404	8.31462634601784	8.4900127344465	8.35125572604175	8.19442795429522	-0.268493592039917	0.260699321179699	0.658184635572459
Merged-chr5-67845420-4	chr5	67844935	67845935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	1996.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	5.28373490880678	5.44098999529059	5.14800864458359	5.25185066540523	5.487157067866	5.43737319387982	0.18243631264004	0.60234396008271	0.882303107092216
Merged-chr7-141558389-4	chr7	141557885	141558885	+	966.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3795.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	5.50517163038607	5.54917263101643	5.91821162130748	5.2531822025955	5.13579236071351	5.82472841956443	-0.446050240618213	0.248605503023841	0.64569263919114
Merged-chr15-78301001-3	chr15	78300524	78301524	+	857.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	B4|SINE|B4	4697.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	4.55778985381546	4.30342882250259	4.32363053416978	3.84345737453247	3.65350039741995	3.68596170758492	-2.05301825854837	8.97028174002271e-05	0.00258986538176201
Merged-chr1-177714197-4	chr1	177713700	177714700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-15614.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	5.31829202662109	5.58402527478956	5.57212704706991	5.66571935783926	5.73081591244678	5.79084850060288	0.436020560370175	0.178531808454506	0.559794804155803
Merged-chr1-91092617-4	chr1	91092105	91093105	+	989.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	39161.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.13501762040814	4.83177471675817	4.84482104977368	5.43573114233263	5.35594922559929	4.44956795432433	0.440528449588539	0.35660687599641	0.74335608732894
Merged-chr10-51486820-1	chr10	51486320	51487320	+	918.0	f1_balb.idr	TTS (NM_001291893)	TTS (NM_001291893)	-4078.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	3.76546010351508	3.81425812467793	3.78645367175552	3.32363648337194	3.47499678821481	3.54389007135144	-1.2118932652418	0.0334931690805048	0.223416675713536
Merged-chr11-100817472-2	chr11	100816972	100817972	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	5098.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	2.7705860093289	2.6364511857232	2.76658987474819	2.49356659449258	2.78213774403774	2.58847859662007	-0.497878297762511	0.524704605635606	1
Merged-chr12-12222825-6	chr12	12222334	12223334	+	892.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39305.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.44643137497595	6.37317714445751	6.12438437525014	6.24406541649671	6.39226755965429	6.25014751786586	-0.048146574599257	0.864761806690667	0.968387979262449
Merged-chr18-82912274-4	chr18	82911769	82912769	+	992.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	1390.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	8.02155916454471	8.03947551890181	7.7401075837288	8.25040287220636	8.42278746853678	8.01257611221271	0.42235088784088	0.0741353801924544	0.358166861147801
Merged-chr7-100505243-4	chr7	100504759	100505759	+	892.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	9556.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	5.1812229634006	4.99783383667954	5.23168919689906	6.39304627467283	6.81799552829129	6.23785322280269	2.49268324899858	1.89425828363981e-13	4.16977363135189e-11
Merged-chr18-65697791-4	chr18	65697294	65698294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177028)	promoter-TSS (NM_177028)	-474.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	8.23359611949796	8.36570888088623	7.74263219093243	7.74774633003956	8.02389962252347	7.5865300047011	-0.485764018824017	0.0716207610852135	0.351070414632015
Merged-chr19-3904154-2	chr19	3903654	3904654	+	960.857178	f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 3 of 19)	intron (NM_001136091, intron 3 of 19)	1076.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	3.56004583292639	3.53179136712273	3.71168567640004	4.12016671373596	3.83264918376646	3.98301198158315	1.25799170343836	0.0195720298056557	0.159115017396494
Merged-chr17-54003731-4	chr17	54003224	54004224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-13093.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	4.50642425976174	4.61293509796838	4.70781488224747	4.48999013123597	4.43379559187054	4.80801673885557	-0.0763353681003824	0.859011247179205	0.967128620887172
Merged-chr19-21781653-3	chr19	21781176	21782176	+	626.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	3336.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.06806997378604	3.01923185849807	3.09090270855325	3.36872603109519	2.98864690665013	3.27916033008901	0.68834308098652	0.299851738784263	0.696578912299989
Merged-chr10-39436296-4	chr10	39435791	39436791	+	796.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	66492.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.65219844401444	4.36112117238886	4.56247723833595	5.1372601731103	4.61696429414614	4.75281155222937	0.758536033680653	0.0841398388629411	0.383769539664946
Merged-chr7-64360235-4	chr7	64359751	64360751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13844.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	7.36019932889439	7.13115186197548	7.22081416889417	7.11958803903885	7.43736130434923	7.36851469045647	0.113366217613042	0.644520535497011	0.900242810676749
Merged-chr17-71597867-1	chr17	71597367	71598367	+	645.0	f1_balb.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	414.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	6.37269841342788	6.45870937314756	5.93584447580669	6.42643157999225	6.03905647923096	5.66051517134528	-0.327220325993972	0.354246476343037	0.741447482268431
Merged-chr10-88584637-4	chr10	88584117	88585117	+	957.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175418, intron 2 of 28)	intron (NM_175418, intron 2 of 28)	20535.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	3.88064345998082	3.68583178122587	3.98989215341304	4.18841549908114	3.93586981123989	3.69381423526801	0.328656891000202	0.544550151835261	0.8578041163513
Merged-chr1-95381214-4	chr1	95380711	95381711	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	UCON29|DNA|PiggyBac?	67583.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.73229824793783	4.71002293523151	5.09726391779644	4.88128405671651	5.05205513689246	4.9237568790424	0.251044844150327	0.527465712322623	0.849959310385428
Merged-chr7-80033543-4	chr7	80033037	80034037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	ID4|SINE|ID	7309.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	7.844103585406	7.59354054311717	7.35947683970127	7.87953116742466	8.13164702975366	7.43958273807471	0.340925324465794	0.226799311434176	0.621775793410922
Merged-chr8-46738627-2	chr8	46738127	46739127	+	846.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 1 of 2)	intron (NR_045750, intron 1 of 2)	888.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	5.43420011529484	5.43313940352833	5.32654169316243	5.54898647176369	5.75661072578761	5.78349874560522	0.55785119634405	0.0873458639411913	0.391865642980445
Merged-chr7-71876286-3	chr7	71875784	71876784	+	911.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33411.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.43244258869987	2.96685881495423	3.21944773159724	3.01826901892999	2.97081944038098	3.29103580828124	-0.537047141987463	0.436861991558531	0.799681606793859
Merged-chr1-191151252-3	chr1	191150738	191151738	+	812.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	13579.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	4.88176167318048	4.76418592489419	5.10954654342554	4.70282142012126	4.4802489241613	4.94547101296474	-0.473735757481334	0.259215409926226	0.656825376873982
Merged-chr18-80257802-4	chr18	80257319	80258319	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	1513.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	5.59893214519829	5.88068760768143	5.71251614401076	5.29997749275852	5.462846639069	5.50116147512386	-0.592425185957122	0.0727190655415087	0.354242023627297
Merged-chr17-25834641-2	chr17	25834141	25835141	+	758.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_144816, exon 8 of 8)	3' UTR (NM_144816, exon 8 of 8)	-1280.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	4.76429897364872	4.80786061055602	4.60947575914243	4.66941002682508	4.90898000627298	4.75821607165204	0.119694086660708	0.766535386038251	0.94248431703451
Merged-chr9-21220673-4	chr9	21220163	21221163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18669.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	6.77191260291593	6.99826312593619	6.24216539498212	7.02734339945741	7.22721672066767	6.51600766854136	0.380492296042335	0.259164919211579	0.656825376873982
Merged-chr5-99242616-4	chr5	99242137	99243137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10290.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.41719569772061	6.53467823453215	6.32064467294913	6.51872771909239	6.57082778354032	6.4388937542022	0.131812295863917	0.621324931690453	0.890659217105386
Merged-chr5-90895900-2	chr5	90895400	90896400	+	972.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3C|LINE|L1	4655.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	3.17325486512386	2.9139880660914	3.10276896653196	2.96228441701716	3.02182984448923	3.28524051916309	0.109108547793174	0.872182376365555	0.970261003150518
Merged-chr10-53914187-4	chr10	53913675	53914675	+	931.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008548, intron 11 of 12)	intron (NM_008548, intron 11 of 12)	161621.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	3.36483881815042	3.25244363192755	3.06909869543005	3.27935822832335	3.18314019041007	3.43251674823815	0.229472580045207	0.720081042154856	0.928031587064128
Merged-chr1-171531518-2	chr1	171531018	171532018	+	978.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010584, exon 4 of 8)	exon (NM_010584, exon 4 of 8)	3776.0	NM_010584	16429.0	Mm.247426	NM_010584	ENSMUSG00000038209	Itln1	IntL|Itln|Itln2|Itln3|Itln5|Itlna|Lfr	intelectin 1 (galactofuranose binding)	protein-coding	2.42026457782465	2.37229478424301	2.4553835725337	2.06698038858586	1.98206992225207	2.13596433177335	-3.20533646058344	0.00347048928690276	1
Merged-chr9-100545341-3	chr9	100544836	100545836	+	820.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	798.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	7.1445089031481	7.43379818252277	7.27718093082759	7.09462862122873	7.00759002075642	7.09359467089919	-0.343801781957207	0.154664624449335	0.52390421792532
Merged-chr12-80847008-4	chr12	80846527	80847527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	56495.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	7.01324888541036	6.65892917083779	6.80453687157808	7.3451122898475	7.62538584113295	6.92474750082169	0.763828471005909	0.00867930956556818	0.0912775518619561
Merged-chr1-184027222-4	chr1	184026705	184027705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6793.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	6.23498106865847	5.99138955524351	5.94377159267478	6.28524537325557	6.49562315684418	6.37198920508885	0.536670856035817	0.0633748825209236	0.327941369701555
Merged-chr11-99024942-2	chr11	99024442	99025442	+	730.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-753.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	3.3416887164236	3.33838400890543	3.70099077709949	3.19704559352795	3.42237407948765	3.30211841509608	-0.571841158946271	0.362162816989565	0.747682847191469
Merged-chr4-8709743-4	chr4	8709248	8710248	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	19342.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.46602384711261	3.46139431521959	3.48316852409789	3.71483749833969	3.56337251098073	3.66209398471724	0.631007999555849	0.260591760981578	0.658045689278249
Merged-chr1-85111789-3	chr1	85111291	85112291	+	654.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1938.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	4.72129678355727	4.62021694487798	4.39213103088728	4.46865409884015	4.01080115040569	4.27536658819751	-0.853235625560512	0.0700715139370084	0.346642536422002
Merged-chr3-89214403-4	chr3	89213897	89214897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-62.0	NM_001357367	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	8.34806515260753	8.23424198402704	7.46145269631971	7.66761956266212	7.59566247400863	7.36931638534444	-0.75314644409628	0.0109977868200285	0.107463006883576
Merged-chr6-136828350-4	chr6	136827868	136828868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	-152.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	8.64611215823673	9.13909093267839	8.40565257031694	8.56829537993246	8.92651173087333	8.4004920266718	-0.162351469990658	0.560733164982369	0.865261302076164
Merged-chr6-33965775-3	chr6	33965280	33966280	+	783.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-63668.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	2.78293737231008	3.25922126360557	3.23698313917125	2.978915632585	2.98685695027226	3.36079680748637	0.0276239161203285	0.969783490709115	0.993210926740941
Merged-chr6-49214083-5	chr6	49213580	49214580	+	746.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023670, intron 1 of 14)	CpG	874.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	1.82423156232478	1.72219489561276	1.76172778629637	2.17834173281739	1.87489011571457	2.12225156590494	2.73201838845468	0.0152890803355611	1
Merged-chr1-183635280-3	chr1	183634822	183635822	+	901.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113655.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.02349304632288	4.26203748288801	4.47173119334246	6.08245503158425	6.21819145740208	5.81715549230389	4.07423489103543	4.56891219770841e-20	3.06588746892678e-17
Merged-chr10-8762938-4	chr10	8762431	8763431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123139.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.73899620171317	7.56519966558593	7.24730086666457	7.51912260928777	7.65709239413658	6.97724993929141	-0.163060382212044	0.574111545400506	0.870523174873875
Merged-chr8-4677917-4	chr8	4677422	4678422	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	64752.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	9.0349604110206	9.1487679952888	8.85987994505521	8.99257231566504	9.33536013425743	8.760700970408	0.0490284439365227	0.83770483286429	0.96222208690411
Merged-chr5-29681863-3	chr5	29681364	29682364	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-54034.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	3.04729551319176	2.93848310098134	3.0935885266656	3.27730990672465	2.98981056940996	3.04674197648946	0.37920762481788	0.570748156879643	0.869253690275099
Merged-chr17-48278552-2	chr17	48278034	48279034	+	767.833374	f0_balb.idr|f1_balb.idr	Intergenic	RMER6A|LTR|ERVK	14239.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	4.8337465789949	4.68356028367781	5.08162130822172	4.8605100943321	4.46415826960819	4.98272450407914	-0.207680469800498	0.629819970053566	0.894377678440432
Merged-chr7-80081887-2	chr7	80081386	80082386	+	557.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6629.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	3.79340623425695	3.74225985930393	3.64071189097451	3.59487854464068	3.52552600967932	3.86271606179949	-0.239464534884545	0.66577250763037	0.907920503949149
Merged-chr17-88530047-4	chr17	88529536	88530536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028658)	promoter-TSS (NM_028658)	-88.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.38829746702455	6.27879664886132	6.41959092201993	6.6532084686852	6.72128507085416	6.38375061916102	0.394186641411716	0.148989242778406	0.515086293547683
Merged-chr17-34923930-2	chr17	34923430	34924430	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 13 of 20)	intron (NM_023557, intron 13 of 20)	-7323.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	6.55751472626881	6.68541329185905	6.79137143369876	6.48628487182527	6.95618559074063	6.77514092142563	0.129705982403412	0.640442554593961	0.898483031109382
Merged-chr18-23903497-2	chr18	23902997	23903997	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51191.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.54367758763233	4.44764409397479	4.19352255383546	4.08573744958225	4.08322444497944	4.16645168970824	-0.824707928546371	0.0782768906173419	0.369421105693822
Merged-chr9-113800839-4	chr9	113800352	113801352	+	814.604126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	7522.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	6.00476567372215	5.97449080472636	6.04455782137544	5.84448501003754	5.88868002851337	5.84773798409082	-0.252554980493762	0.387160037965559	0.767462350491678
Merged-chr11-101971589-3	chr11	101971089	101972089	+	883.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-4574.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	6.22506789731613	5.96202444764419	5.89671082595734	5.95448524173854	5.96322589434826	6.05212026622995	-0.0960488566582739	0.748662473070263	0.937087780077821
Merged-chr5-114700143-3	chr5	114699645	114700645	+	859.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER54A|LTR|ERVL	-7634.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	6.96910289282652	7.04802695110606	6.94440781246588	7.17307513076847	7.36460541600309	7.18618646958713	0.39041599425548	0.102183832518997	0.42621511220806
Merged-chr2-127397919-4	chr2	127397427	127398427	+	939.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27272.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	5.41324046564619	5.25763811141393	5.65815518847091	6.05414469614302	6.08787173723249	5.89762842961354	1.06094526613255	0.000967186515546987	0.017556207588489
Merged-chr15-57888668-2	chr15	57888168	57889168	+	701.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	3750.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.60956945731487	3.5694444464893	3.62824863672174	3.6094098536869	3.74314885027636	3.47729937948897	0.0752712269943063	0.893327644695701	0.975235709206083
Merged-chr19-6941536-4	chr19	6941102	6942102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007522)	promoter-TSS (NM_007522)	-95.0	NM_001177362	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	6.45063573766423	6.64405787238306	6.84441054314526	6.44142002694853	6.45617683144208	6.5139830397141	-0.287119425151864	0.291856096863906	0.689235268138963
Merged-chr4-139209048-4	chr4	139208553	139209553	+	998.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14942.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	7.32654316197977	7.12202929474663	6.950812238344	7.56159586617617	7.87900481881139	7.1494891062401	0.630345017527907	0.0282808193551845	0.201282218536155
Merged-chr16-36712718-2	chr16	36712218	36713218	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285788, intron 3 of 7)	MIR|SINE|MIR	18740.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	6.95869223177549	7.08491312398521	6.32621405542846	6.73900048170687	6.75797618266981	6.20695609251892	-0.374188247727968	0.262988188488329	0.661009551056846
Merged-chr11-29172844-4	chr11	29172352	29173352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-55.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	7.77159010573165	8.00883581109997	7.61571785665143	7.56070615194423	7.95824672770735	7.96697116996528	0.0400773005144806	0.873383418774305	0.97040331531529
Merged-chr12-80667951-2	chr12	80667451	80668451	+	816.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026244, intron 3 of 6)	RLTR14|LTR|ERV1	23736.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	4.26658229595841	4.5419337303358	4.59229900491181	4.10371583414794	4.10677440210663	4.83281747853444	-0.218159426436596	0.672167050921977	0.910736957619704
Merged-chr10-80560788-3	chr10	80560270	80561270	+	788.155579	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	790.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	6.25155605091026	6.30338508342923	5.7805318996974	6.52985898331206	6.22673736032628	5.84396789381008	0.159414567048649	0.643339013729171	0.899755486248875
Merged-chr19-53895011-4	chr19	53894512	53895512	+	899.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	2781.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	3.67624533865896	3.55873440742082	3.36200546048462	3.45586417839278	3.43303981925007	3.85388448007876	0.154003295693344	0.798774990456137	0.952063885260145
Merged-chr2-75892224-3	chr2	75891740	75892740	+	719.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172666, intron 13 of 19)	intron (NM_172666, intron 13 of 19)	46222.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	2.89909962733534	3.18537139737732	3.07378238542293	2.93660972798478	3.06632879321803	3.08735959467452	-0.124585906598128	0.854063352827907	0.965896967163733
Merged-chr11-95844903-4	chr11	95844402	95845402	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023121, intron 2 of 3)	intron (NM_023121, intron 2 of 3)	1657.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	6.88365511247784	6.82980580228737	6.91506133060825	7.40246144227611	7.32804423397276	6.85381981628805	0.533587358921769	0.0456568111605483	0.269873690633438
Merged-chr5-34527435-2	chr5	34526935	34527935	+	830.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1651.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	4.85028196029446	5.33664826389369	5.83436884391838	5.40443780504539	5.36333959990234	5.87308277427341	0.315813556266647	0.466140774603521	0.817366049302902
Merged-chr1-171816513-2	chr1	171816028	171817028	+	644.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23169.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	5.80161014749644	5.68411251706786	5.78693663810273	5.29785131584483	4.96294610697707	4.83042068987684	-1.38201796857374	0.000142731182730431	0.0038101944987596
Merged-chr19-47464702-3	chr19	47464221	47465221	+	915.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164717)	promoter-TSS (NM_001164717)	-310.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	7.43292483313197	7.1738570389533	7.00279544449084	6.96604447288617	6.53948507863801	6.10621605736932	-0.958164163243653	0.00323432172289432	0.0446452292499321
Merged-chr17-50149966-4	chr17	50149524	50150524	+	816.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	40473.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	5.00238905945586	5.11404063036345	4.71924234658368	5.40379621401663	5.31814213102827	4.9142799115729	0.564250983065054	0.157872975167641	0.529433117755483
Merged-chr2-144247513-4	chr2	144247017	144248017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18685.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	5.5459940867254	5.5178105229059	5.76206661854013	5.53744999604615	5.44242983632562	5.10495754903952	-0.42009097018096	0.230809329863284	0.62651849864288
Merged-chr10-59981035-4	chr10	59980524	59981524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21781.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	6.10761684405172	6.31078623470361	5.88354688414161	5.24371793209833	5.75273152009311	5.96867904763552	-0.763147006776874	0.0331490430781981	0.222078216430533
Merged-chr18-80691823-8	chr18	80691338	80692338	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	16335.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	7.59761614152322	7.23297817813769	7.09020663337048	7.15541750423747	7.11885972071431	7.10878948899782	-0.306306112012331	0.236845329365716	0.63324025165927
Merged-chr11-54561378-1	chr11	54560878	54561878	+	544.0	f1_balb.idr	exon (NM_175258, exon 5 of 28)	exon (NM_175258, exon 5 of 28)	-34768.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.14803488284537	4.44860145304569	4.06398230762155	4.13861559439038	4.65485822084579	4.23440644493551	0.356754656592604	0.480383618765742	0.824543506620807
Merged-chr4-62266287-4	chr4	62265788	62266788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-20141.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.04702294386721	3.87583782955113	3.62444544034866	4.39188082709561	4.1843789434789	4.36058174462746	1.26742265999408	0.0164052091585991	0.141424863288217
Merged-chr5-88564899-4	chr5	88564411	88565411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-129.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	8.01033097769255	7.93651938922197	7.84253997148885	8.05855836268905	7.83354543238627	7.97722107960169	0.0324448225939911	0.881526970878157	0.972787143481999
Merged-chr1-87625469-4	chr1	87624988	87625988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 1 of 26)	L1MB7|LINE|L1	5176.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	8.06775366559519	7.8355524423274	7.78005815350048	7.91968621989401	7.93322520812985	7.88624013335411	0.0134424338917336	0.951432729957306	0.988807980335639
Merged-chr5-108628484-3	chr5	108628021	108629021	+	725.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	1256.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	5.90803702801286	5.96042527225225	5.79875239553697	6.0353000412988	6.0623596689309	6.00756744474936	0.244767923846881	0.401936101182991	0.777823507457637
Merged-chr15-4025486-2	chr15	4024986	4025986	+	978.166626	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024188)	promoter-TSS (NM_024188)	-942.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	6.71464037393819	6.74004620061668	6.76060086526239	6.58730600100642	7.0075774763282	6.42204271280667	-0.0382313092447529	0.894668928641249	0.975576532925631
Merged-chr4-45597244-2	chr4	45596744	45597744	+	759.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-42692.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	2.48768535686865	2.34108336023342	2.44658391583982	2.51522748804482	2.40328562626599	2.94136685375997	1.2066949010318	0.15150949309832	1
Merged-chr2-118976489-4	chr2	118975986	118976986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	49989.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	3.91895596376284	3.77757183901102	3.43343892363835	3.22148481661105	2.97670284703882	3.20043494084831	-2.5165849520635	0.00024448016558337	0.00589302016739892
Merged-chr14-43925211-4	chr14	43924717	43925717	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1849.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	6.06255771880503	6.32023759744819	5.9661614281581	6.49754476122273	6.84248757833579	6.28090399089774	0.721411170094062	0.0204887320468486	0.163988689510791
Merged-chr7-34912330-4	chr7	34911833	34912833	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008820)	promoter-TSS (NM_008820)	-74.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	7.04689006471629	7.50352533562045	7.22293038640584	7.2756769986557	7.16237692834388	6.67438304185781	-0.303143266011076	0.295453332741474	0.692372797216114
Merged-chr8-35654438-4	chr8	35653954	35654954	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-65434.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.11036885367568	5.28434081799316	5.41263865128508	5.41488165276079	4.878101184838	5.0980515780392	-0.251064489833673	0.516124611128726	0.844051513295388
Merged-chr7-142395165-4	chr7	142394650	142395650	+	891.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-7280.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	6.57159135242729	6.59867552508008	6.59507430803614	6.60742115583864	6.79845237134858	6.70319700789698	0.191017237915071	0.454783741836354	0.810564504041759
Merged-chr4-129182518-2	chr4	129182018	129183018	+	845.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029036, exon 3 of 7)	exon (NM_029036, exon 3 of 7)	7024.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	2.85539538341363	3.18313883698777	2.94630867006961	2.92959419752883	2.99093130266192	3.30354618860596	0.329050869524027	0.641505254739777	0.899079825440245
Merged-chr1-43447001-4	chr1	43446515	43447515	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	1264.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	4.77447037217027	5.14199417013128	5.03642954184779	5.62111976089952	5.81000952856154	5.27899827304318	1.20661888792292	0.0014689224452105	0.0243478284504134
Merged-chr7-4900312-4	chr7	4899804	4900804	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-14913.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	3.50760550323357	3.32199757405782	3.78758011678989	4.94002222236901	5.16673082574661	4.87282914782151	5.17639636883602	2.82094091179901e-12	4.99414577423345e-10
Merged-chr10-7600807-4	chr10	7600313	7601313	+	980.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	11013.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	3.26583051962853	3.12454723513691	3.11201740350666	3.37621209912057	3.08977062499964	3.46667325529235	0.583892797106083	0.367824906790706	0.752858948767399
Merged-chr13-113491816-2	chr13	113491316	113492316	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11028.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	4.26285611954322	4.2401864819188	4.11720696071587	4.58952446972287	4.40792470597202	4.08493389626677	0.457158149557616	0.338124297254912	0.728028115564412
Merged-chr19-32071111-3	chr19	32070617	32071617	+	768.455566	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018830, intron 2 of 23)	intron (NM_018830, intron 2 of 23)	32023.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	2.40474993674692	2.73425482259375	2.54718090125567	3.08480291072923	2.62046689219305	2.9436847973322	1.72448588027535	0.0416681322482351	0.255235714672493
Merged-chr17-31074856-4	chr17	31074364	31075364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17170.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	8.47339090528873	8.47789924562385	8.27732192266605	8.40896877444995	8.73938326633754	7.97426403995006	0.00933704251603681	0.971786174413728	0.993783614343214
Merged-chr11-19963904-4	chr11	19963410	19964410	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	39468.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.731454042708	4.29116214325216	4.42642627869195	4.16550429895678	3.75343870817871	4.27637820681192	-1.15295089525784	0.0249142145631816	0.186661441146517
Merged-chr2-143991389-7	chr2	143990887	143991887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	19876.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	5.7049645170672	5.46971980258938	5.5818184393946	5.70053635375023	5.64811683989937	6.0095099475999	0.359122725598613	0.274518785952149	0.671828210044307
Merged-chr17-27778034-4	chr17	27777475	27778475	+	913.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033279, intron 3 of 4)	intron (NM_001033279, intron 3 of 4)	42567.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	3.17034157308714	3.24682064860215	3.01080809332305	3.14042132890969	3.35682468590833	3.20682428824624	0.377084566330107	0.563040385130907	0.865762574483528
Merged-chr1-95597019-4	chr1	95596516	95597516	+	847.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009183, intron 4 of 4)	Lx8b|LINE|L1	70578.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	3.4736203810908	3.43290147934914	3.50428157258443	3.44211693167159	3.31127979028492	3.10488638885664	-0.661554486362382	0.288528391623658	0.685958753399278
Merged-chr1-177131688-4	chr1	177131168	177132168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	117099.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	6.06097791280553	6.4077866933501	6.11844049913105	6.06404839270641	6.25703372676327	5.66779432497359	-0.295614683772126	0.369034111077781	0.753819397358181
Merged-chr2-52500069-4	chr2	52499572	52500572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	58539.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	4.30340916743092	4.34881460722558	4.46818602243611	4.10267144173816	4.13573376943917	4.32650623984289	-0.502694561952026	0.272446743504176	0.669672357127953
Merged-chr6-124741155-4	chr6	124740653	124741653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-74.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	7.94215284941659	7.94053025681909	7.77420459422622	7.85355432266916	8.25077224800666	7.87275200409486	0.173617355581388	0.464148549085845	0.816188315062566
Merged-chr17-29489183-4	chr17	29488683	29489683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1862.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	9.03339803218134	9.2365382323369	8.50450671617473	8.75348871367706	9.15048684530389	8.365523428625	-0.221669564586135	0.454566431333777	0.810474951829269
Merged-chr16-21691857-4	chr16	21691359	21692359	+	922.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2806.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.10603276154607	6.3879570005858	5.93538143152552	6.14441753123936	6.19617388669777	5.78652007969951	-0.170507402201554	0.593355601434029	0.87844954599148
Merged-chr12-33041631-3	chr12	33041119	33042119	+	938.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024478, intron 15 of 19)	MIRb|SINE|MIR	51256.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.90131941754063	5.16639042736528	4.71590241402967	4.57611944586223	4.87240194968135	4.52192565682348	-0.612058841829694	0.154021563452714	0.523165395577891
Merged-chr2-71866064-4	chr2	71865569	71866569	+	978.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_039557, intron 3 of 3).2	(T)n|Simple_repeat|Simple_repeat	-7155.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	4.40762345946338	4.54721686732197	4.43482924866438	4.81432739816755	5.12204450190428	4.83618402236591	1.10624302255137	0.00767721349554344	0.0835281793853729
Merged-chr8-75081862-7	chr8	75081353	75082353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-11765.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.92181922209762	6.6908776565611	6.71730299639763	6.79803336553484	6.8090838888881	6.80698066069402	0.0323492224734019	0.898115858073824	0.976261391798139
Merged-chr8-116978953-4	chr8	116978405	116979405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357254)	promoter-TSS (NM_001357254)	54.0	NM_027103	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	6.85834475613411	7.11254259754266	7.10703719074794	6.75013158604272	6.78158589177983	6.93165678829273	-0.324625195984577	0.199227683267573	0.587623906831272
Merged-chr2-152671069-6	chr2	152670569	152671569	+	830.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	1608.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	4.19746603700652	4.40272372757426	4.43180267261587	4.27128005636819	4.1749705140818	4.23746270817169	-0.318808623253493	0.48485858387917	0.827172930129731
Merged-chr6-113604807-4	chr6	113604329	113605329	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133937)	promoter-TSS (NM_133937)	57.0	NM_133937	101314.0	Mm.485793	NM_133937	ENSMUSG00000033940	Brk1	6720456B07Rik|AW011779	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding	7.08882821182395	7.22110606118257	7.41531423897125	7.05504509655858	6.98875759175424	7.00824536235212	-0.33955649114686	0.164648471785026	0.539208350811795
Merged-chr2-59975105-2	chr2	59974605	59975605	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-92499.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	2.93128433375611	2.91084717918784	2.96918736445718	2.63395604314466	3.05624028818936	2.98243476020413	-0.139935661463835	0.850180416817684	0.964823340142195
Merged-chr10-128097904-4	chr10	128097363	128098363	+	970.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054078, intron 2 of 29)	intron (NM_054078, intron 2 of 29)	5080.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.99997860708808	7.0995932796784	7.14279993315949	7.20510437662791	7.38702031611632	7.29440934778629	0.33230713437418	0.158200053287935	0.529917060944743
Merged-chr5-36573435-3	chr5	36572937	36573937	+	852.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	8960.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	5.87343151991396	5.61520526683469	5.81375739360118	5.85550016860684	5.9002603045795	5.63592970667905	0.0753561969537307	0.811628268230858	0.955304895434479
Merged-chr9-106476221-4	chr9	106475716	106476716	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145619, intron 1 of 10)	intron (NM_145619, intron 1 of 10)	733.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	6.68291502633651	6.63555231022887	6.74040285161074	6.46328979945269	6.69038769254555	6.48154728976548	-0.201583860448696	0.442064629130286	0.803076081297089
Merged-chr6-115809076-4	chr6	115808560	115809560	+	999.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172086)	promoter-TSS (NM_172086)	-317.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	7.20308080422276	7.44234737434424	6.85990327144828	7.0972208937586	7.12953573559749	6.53604755733838	-0.361060543252505	0.235251127379731	0.6315179111056
Merged-chr11-69999862-2	chr11	69999362	70000362	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-764.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	5.26113259534095	5.10927189803331	5.45167548089368	5.24307866322092	5.45320524279478	5.42843170565366	0.215126440137993	0.541464950403025	0.856839001867185
Merged-chr5-130003001-4	chr5	130002504	130003504	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	45.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	7.91679922672639	8.20909999785981	7.62202312467212	7.74799954097552	7.99883070852504	7.67863649159958	-0.178392052866942	0.491045568444885	0.830342687115936
Merged-chr1-64296273-2	chr1	64295772	64296772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-174883.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.87227055859923	6.66684987024214	7.11945633788898	6.76609975434554	6.93315400427919	6.80278980857229	-0.0782279790900152	0.769875000681807	0.943288465925629
Merged-chr2-167476565-2	chr2	167476065	167477065	+	829.333374	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_130767, exon 14 of 14)	non-coding (NR_130767, exon 14 of 14)	-16080.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	5.16760227558834	5.09912448762925	5.10160438526202	5.17797912704986	4.80488852645497	5.09814180144235	-0.202973308516567	0.589945408963715	0.877060163469295
Merged-chr5-150841359-3	chr5	150840863	150841863	+	728.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-111244.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.85101529147035	5.20272991318038	5.16607847419583	5.05379443770597	5.2189666068655	5.29229581139075	0.227262503300565	0.543980580968088	0.857551302506722
Merged-chr7-81345283-4	chr7	81344792	81345792	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-58.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	6.83729416830394	6.90516103905627	6.73141401169133	6.91684501235815	6.73479900549484	6.83615962512005	-0.00472381308730964	0.984960243197101	0.996843917206
Merged-chr11-67579976-2	chr11	67579476	67580476	+	697.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-6524.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	3.47569806005055	3.28728435167097	3.2909973170361	3.59653586050063	3.16915710664646	3.05017681590587	-0.228722610463037	0.733883842949952	0.932325051544019
Merged-chr1-16228432-4	chr1	16227914	16228914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	122532.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	7.47856913508559	7.57475750552868	7.6055027578831	7.68818486399825	7.72131135662442	7.93599640017505	0.332634396375345	0.138877804187132	0.49789927747007
Merged-chr1-147010153-1	chr1	147009653	147010653	+	540.0	f1_balb.idr	Intergenic	Intergenic	512466.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.31914760215404	4.21502524926071	4.27628202200545	4.28478921486653	4.44909402420429	4.29887167896487	0.217906586834017	0.627877779411862	0.893418853041404
Merged-chr17-5047521-2	chr17	5047021	5048021	+	852.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	52447.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.75475048187757	3.6355969755627	3.6234099696895	4.27481461337979	4.21897493114362	3.91985488958085	1.48376648799661	0.00506011155444226	0.0616927013718959
Merged-chr2-25627468-2	chr2	25626968	25627968	+	665.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007995, exon 2 of 10)	exon (NM_007995, exon 2 of 10)	506.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	7.00480707796751	7.22709551706426	7.42889694087203	7.56026296349197	7.45960856829328	6.66582898524362	0.100927184136376	0.751424692963679	0.937886504040509
Merged-chr1-59316856-4	chr1	59316326	59317326	+	986.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59920.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	4.50539058002329	4.5757043314789	4.50113553928629	4.09839565774453	4.21680965008429	4.44358488369512	-0.721999894206863	0.108217004473863	0.439398218728357
Merged-chr2-93333626-4	chr2	93333148	93334148	+	903.400024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183180, intron 1 of 9)	CpG	839.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	3.50606794948166	2.99964895187626	3.35968502090684	3.18395647258265	3.08143504829743	3.01972447952645	-0.870794032317897	0.203921273286063	0.594155098661906
Merged-chr12-73291885-3	chr12	73291385	73292385	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	5037.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	3.95300750179795	3.77768280207638	4.41420799252637	3.69992793524669	3.20164943126736	4.08266878953214	-1.02549946027158	0.319746843849022	0.713666721646712
Merged-chr15-83113048-3	chr15	83112506	83113506	+	886.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023475, intron 9 of 11)	intron (NM_023475, intron 9 of 11)	9795.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	3.15445205618014	3.07616940156159	3.39907058536496	3.88587486598873	3.83842729511657	3.35344930600421	1.96718184586042	0.00253826025932544	0.0371575579975284
Merged-chr14-20833787-2	chr14	20833287	20834287	+	673.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	-2875.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	5.90057344421376	5.41292561786333	5.00021704560896	5.10605539070795	5.26890244051088	4.98838636818661	-0.728014910994408	0.0816372364470408	0.377936736701323
Merged-chr15-79455601-4	chr15	79455105	79456105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13462.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	6.91186713493409	6.90451680127688	6.86611355239958	6.98257694370366	7.17190841939173	6.81879625225287	0.174585594226501	0.48917934102285	0.829463665877031
Merged-chr14-103387263-1	chr14	103386763	103387763	+	630.0	f0_balb.idr	Intergenic	Intergenic	-40463.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	2.96070029850646	3.13488141970877	3.12683080089426	3.10440166503901	2.80465323339473	3.08325149117335	-0.347123439114525	0.614114795235188	0.887411760755953
Merged-chr18-53144944-1	chr18	53144444	53145444	+	729.25	f0_c57.idr	Intergenic	B2_Mm2|SINE|B2	-31348.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	2.68176209461575	2.49945449615821	2.69369897767988	2.84236562023295	3.18891959106503	2.95716284024086	2.06467226902027	0.00861701540396435	0.0908520803006926
Merged-chr17-15396198-4	chr17	15395701	15396701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024203)	promoter-TSS (NM_024203)	-1.0	NM_001357822	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	6.63007275500502	6.93108988881607	6.71740866704199	6.83120489572788	6.91570768719326	6.96686514476652	0.208371775073352	0.417277402462785	0.78794549198056
Merged-chr5-123134826-2	chr5	123134326	123135326	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2197.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	3.7031306770489	3.66593735698201	4.10925026345072	3.83184136372638	3.74723141814319	4.17586093995049	0.282621867518872	0.611281227689263	0.886007771523372
Merged-chr2-58198714-4	chr2	58198216	58199216	+	768.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34742.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	4.40913489237076	4.71104400929628	4.87430679052956	4.79472677938719	4.54327437517504	5.131940738862	0.372682222780287	0.405503201602752	0.780279107725129
Merged-chr7-97129456-4	chr7	97128961	97129961	+	922.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162477, intron 1 of 9)	CT-rich|Low_complexity|Low_complexity	47710.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.05665619912368	4.95147832379762	4.85259475353224	4.93402862324472	5.15888343292356	5.59455039884852	0.598618065613115	0.13667482371218	0.49382446696806
Merged-chr6-51558526-4	chr6	51558035	51559035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	13242.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.30978225221367	6.29114765155411	6.27268291839597	6.23206915192798	6.44676610085762	6.29260814836843	0.067498903589736	0.805644754085051	0.953956034266138
Merged-chr17-46153573-4	chr17	46153080	46154080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-29.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	5.58147753531111	5.83822657866145	6.15542897678131	6.00307922844902	5.97650263806344	6.15526357766528	0.306579450005453	0.343530829213302	0.732367959280244
Merged-chr12-108638553-2	chr12	108638053	108639053	+	892.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2800.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.65660019779084	7.95262525613252	7.62796435498214	7.71957091691058	8.10659177588894	7.86846552764912	0.220179922288011	0.368267724589787	0.753265422302852
Merged-chr13-54592007-3	chr13	54591509	54592509	+	903.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347512)	TTS (NM_001347512)	1778.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	4.99408739689122	4.74992398003951	5.18876652703096	4.74951087520758	4.47968755625755	4.93054412104671	-0.587202185144771	0.164490656171488	0.53908931106846
Merged-chr10-100031707-4	chr10	100031198	100032198	+	939.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15877.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	6.79408351358158	6.96757160485298	6.14510452439608	6.67887518218765	6.6597846404582	6.15900786018152	-0.259813235716557	0.447797417113671	0.806762530760947
Merged-chr17-32336104-4	chr17	32335583	32336583	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_017476, intron 6 of 13)	intron (NM_017476, intron 6 of 13)	14494.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	4.17925732275505	3.96529156028589	4.41788306079889	4.15105397023523	3.97965855261223	4.18934799657787	-0.244767886180549	0.620979508641067	0.890443966155973
Merged-chr17-12159526-4	chr17	12159020	12160020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	40236.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	4.27419588684661	4.38585495228766	4.2467480662876	4.00889564181988	3.70710000363626	4.55675362686321	-0.469679643485732	0.393043543809324	0.771429661681589
Merged-chr8-71610231-3	chr8	71609738	71610738	+	693.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-786.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	7.10265003974338	7.25304519115444	7.05370517014574	6.60651123637812	6.93169043710218	6.70238332016942	-0.582416195049791	0.024127522459057	0.182675422090375
Merged-chr14-75015995-4	chr14	75015493	75016493	+	997.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198642)	promoter-TSS (NM_198642)	-34.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.49862859068478	6.37716990825068	6.22811773507515	6.76909453774162	6.639356197604	6.15426651935613	0.290205468910403	0.338523049629573	0.728543936569625
Merged-chr11-98707808-2	chr11	98707308	98708308	+	642.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	6495.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	5.08438701508944	4.65758645557183	4.64582985930553	4.40825988273776	4.26455756769351	4.63180003587644	-0.931941113184006	0.0372680835449854	0.238280870106621
Merged-chr14-103101405-2	chr14	103100905	103101905	+	849.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1839.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	2.52749691425884	2.58816725055006	2.71679482982941	2.44148526724868	2.73646745690803	2.66774864656119	0.0761778177504446	0.922710322697642	1
Merged-chr6-21956970-2	chr6	21956470	21957470	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	7355.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	3.59968389765736	3.58537955948213	3.74779799977821	3.62683832073235	3.50607853742248	3.71696551600223	-0.0986795123789002	0.858521534490008	0.966933063363181
Merged-chr2-153161771-1	chr2	153161271	153162271	+	1000.0	f0_balb.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	470.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	8.33884546590747	8.17538777560741	8.03706628326613	8.31142212018364	8.52435889269552	8.07813102139524	0.183579619128639	0.435303188576392	0.798959195186662
Merged-chr9-55257306-4	chr9	55256799	55257799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	26326.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	5.92579250442098	5.83479971094538	5.93554505136594	5.54594890573054	5.36889084108198	5.5947159148042	-0.736304145266734	0.0193640152556121	0.158057777260052
Merged-chr7-120833320-4	chr7	120832834	120833834	+	906.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9497.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	3.34089714330356	3.25644136009046	3.29285861228841	3.65474894592347	3.44005778002862	3.83707234149278	1.30139180851428	0.0314222464472803	0.214750084795507
Merged-chr14-63543900-4	chr14	63543374	63544374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177594)	promoter-TSS (NM_177594)	79.0	NM_177594	210376.0	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	6.04877202235056	6.40757631360051	6.48881151146018	6.50313426390604	6.32693236782035	6.28772109860589	0.0896193101632076	0.760072118941475	0.940599840467163
Merged-chr6-85370461-2	chr6	85369961	85370961	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	4173.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	3.79979020803331	3.6569660508926	3.90926855731237	3.4421560313992	3.25379744102621	3.52790432900367	-1.4000388096029	0.0171900715278408	0.14600937687724
Merged-chr19-40963200-4	chr19	40962700	40963700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008528, intron 4 of 16)	intron (NM_008528, intron 4 of 16)	31335.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	4.09695319741592	3.91731883791337	3.68977081125359	3.76918322792004	3.7048554128339	3.81522136096816	-0.507993884277941	0.343250565923529	0.732134758996586
Merged-chr8-94186831-4	chr8	94186329	94187329	+	838.854187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7740.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	3.85075461077104	3.79712151060827	3.75975937503568	3.68630595184313	3.6279206122945	3.5599411997569	-0.598161682327423	0.267155126656555	0.664550966981069
Merged-chr9-87027819-3	chr9	87027345	87028345	+	798.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359962, intron 2 of 14)	intron (NM_001359962, intron 2 of 14)	5816.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	2.23749830704845	2.42184727878043	2.44887140084014	2.28298077524057	2.23346036174074	2.19555296345236	-0.898825569444918	0.299092991257616	1
Merged-chr10-7825484-3	chr10	7825004	7826004	+	850.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6966.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	4.43098305385535	3.7930548300904	4.37821537745196	4.08736018939814	4.25841331848501	4.27445703555384	-0.057117808723959	0.913129915317897	0.980547885371373
Merged-chr9-85319375-2	chr9	85318875	85319875	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(ATGTG)n|Simple_repeat|Simple_repeat	7749.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.66748396735866	2.82413570325961	2.78376127304995	2.77379886971196	2.89060862507935	3.09042444851713	0.802695919554485	0.26817955487128	0.665310623989488
Merged-chr13-54503748-4	chr13	54503224	54504224	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176987)	promoter-TSS (NM_176987)	-81.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	5.22724764103803	5.14348565571275	5.35082924776002	5.1260594733431	4.91942084448404	5.06341610310498	-0.423669680974512	0.243116039818422	0.640367862483409
Merged-chr16-57396441-4	chr16	57395955	57396955	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	43178.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.22272690413418	2.70755817000399	3.00783228738138	2.92802394564202	3.08400544153795	3.25173941314244	0.412014137665838	0.577043166981358	0.871930699660138
Merged-chr1-165731700-4	chr1	165731182	165732182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23588.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	5.43909957386	5.27488303088917	5.3988786715676	5.50746399117783	5.49932764597055	5.20315411508603	0.0977217521216765	0.776780954325403	0.944892922631445
Merged-chr11-51618733-2	chr11	51618233	51619233	+	547.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1040.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	4.47123571679994	4.38113221432118	4.35985875273207	4.2907168383809	4.35319358835996	4.33843252838359	-0.206119503534457	0.639046476039607	0.897861309727799
Merged-chr3-59152227-2	chr3	59151727	59152727	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045641, exon 1 of 1)	non-coding (NR_045641, exon 1 of 1)	1265.0	NM_001287119	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	2.97640022969625	3.00132163185007	2.70287903565597	2.82302172591574	2.91126697502492	2.96744054560605	-0.0258920535973141	0.971451343691399	0.99377981119604
Merged-chr15-102393708-4	chr15	102393208	102394208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12608.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	6.8871967998795	6.76179360560877	6.5020201814382	6.49097088745221	7.00116312124581	6.68410117052417	0.0275607795120496	0.924521232750835	0.982973950833402
Merged-chr6-89579600-2	chr6	89579100	89580100	+	616.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	16052.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	2.85346507933878	3.03089035555603	3.00955947360868	3.1851117077164	2.82930308622288	3.30744885049285	0.675502154469052	0.339730079336059	0.729397455488285
Merged-chr8-46733507-2	chr8	46733007	46734007	+	734.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6008.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	5.00102725782889	4.74330054934361	5.05306616613462	5.21740631054222	5.2195731386797	5.42587825689646	0.73840820361516	0.0473732507237415	0.275694229089678
Merged-chr6-37144670-2	chr6	37144170	37145170	+	960.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	155306.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	5.28163651894741	4.85185358952482	5.28003587227697	5.46668520442477	5.49562766075839	5.65319242352533	0.770572217856506	0.03452014139565	0.227675326985514
Merged-chr4-65604990-4	chr4	65604452	65605452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161782)	promoter-TSS (NM_001161782)	-34.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	5.01905214959857	4.8398707642134	5.01636932763726	4.92120772523446	4.82947517615747	4.94056107692994	-0.140832074598044	0.710515548786945	0.924358113435436
Merged-chr5-121713399-2	chr5	121712899	121713899	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	1790.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	4.66604994401162	4.36798180847762	4.58035797687699	4.74502545751294	4.40644449525587	4.68635455903218	0.173820307957335	0.690906744196163	0.918060817168227
Merged-chr2-129313412-1	chr2	129312912	129313912	+	574.0	f1_c57bl6.idr	Intergenic	Intergenic	-3440.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	3.47351698335803	3.28308708370601	3.45281541391105	3.28424616524544	3.41768898904055	3.35823324058113	-0.181922680514742	0.761865959218026	0.941338831902106
Merged-chr8-113655674-1	chr8	113655174	113656174	+	623.0	f1_c57bl6.idr	TTS (NM_001048145)	TTS (NM_001048145)	12461.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	4.40350449952768	3.93536852668557	4.30476764488721	4.09679360914336	4.11607991106784	4.45388996282226	-0.00954887916592123	0.984815777370624	0.996783213558794
Merged-chr9-123856479-2	chr9	123855979	123856979	+	706.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_011798, exon 2 of 2)	exon (NM_011798, exon 2 of 2)	-4580.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	4.3543971429562	4.03871459132534	4.40835765471357	4.6894243646704	4.47063670871072	4.67680636452141	0.869007327264217	0.05599673316899	0.30469370739768
Merged-chr4-122991383-4	chr4	122990863	122991863	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	HAL1|LINE|L1	-4568.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	3.28966115164387	3.20578138618762	3.31587876245983	3.24529315768612	3.18918826642443	3.38638283507743	0.00574338553313028	0.992551312064217	0.998523796268552
Merged-chr10-4391970-4	chr10	4391443	4392443	+	862.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3835.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.10120529629311	4.14303312678939	4.46121425699139	4.54769416813343	4.55537304126105	4.1673767037532	0.550400864254603	0.24763189433816	0.644630042050108
Merged-chr11-98777455-4	chr11	98776948	98777948	+	878.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2071.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	7.03640516555408	6.81298935833597	6.94287238511837	7.03855049129806	7.19148971850803	7.1814514799621	0.313092137850124	0.200078955710052	0.588889204172492
Merged-chr17-30576413-4	chr17	30575916	30576916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027060)	promoter-TSS (NM_027060)	-129.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	8.50624315499979	8.68772403135659	8.40198978901008	8.65480173064611	8.58670361384497	8.23181805723241	-0.0432509683394329	0.850894790831574	0.964998582426176
Merged-chr9-19622103-4	chr9	19621614	19622614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	23.0	NR_153375	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	6.31419733666887	6.62020026777502	6.20256636567544	6.33823009095699	6.58944862705628	6.24175834415394	0.0126158755022191	0.966186277341353	0.992263863114864
Merged-chr3-79561995-4	chr3	79561502	79562502	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	5677.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	4.32486085391137	4.39686130835412	4.14383305214894	4.15284652038064	4.22181043905427	4.25989373165405	-0.242645086293929	0.598895480231061	0.880844471295403
Merged-chr9-58276220-6	chr9	58275737	58276737	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	23073.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	7.79439190300132	7.84919930149332	7.89337031901246	8.28734122228613	8.57807323610482	8.1942852380986	0.75022625724337	0.000880836848074154	0.0163271714089005
Merged-chr16-21793495-4	chr16	21793009	21794009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-838.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	7.94725146526642	7.93783656284838	7.49516658857492	7.87881747521734	8.1172294074249	7.50902723420012	0.0730377269652754	0.789090120992267	0.949103962283165
Merged-chr8-10663948-4	chr8	10663403	10664403	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	218551.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	6.05483688831584	6.08628622752131	5.90755463762355	5.70106142918674	5.72839205607524	5.79471897129291	-0.506120145925344	0.0902866259707389	0.399521481850518
Merged-chr7-125551273-4	chr7	125550778	125551778	+	965.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1004.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	5.96962269076581	5.84325106913711	5.66291573769496	5.65154340476842	6.1353024189827	5.83269116025742	0.108364346016297	0.742957263556886	0.935417543785804
Merged-chr4-53109837-1	chr4	53109337	53110337	+	621.5	f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	MER5A|DNA|hAT-Charlie	50058.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.95014719525027	5.02323942846074	5.26762047183132	5.35052473170056	5.07308627902226	5.20553282975743	0.277975452064136	0.45280015654838	0.809457484278845
Merged-chr8-104632202-4	chr8	104631723	104632723	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-902.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	5.01118013955402	5.18947580608337	5.4842404430249	5.13016867407584	5.26807449442918	5.31869280498104	0.0182541374624434	0.960568838318944	0.990386809359123
Merged-chr17-34296849-3	chr17	34296356	34297356	+	920.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9011.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	7.60045774769369	7.68369315306969	7.19493762696738	7.65230379409325	8.0828204181786	7.30308531397634	0.308683980032293	0.299173939071069	0.695964214930834
Merged-chr4-45487952-4	chr4	45487439	45488439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	42889.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	4.99063000151415	4.75438682017652	4.59293543177078	4.72017578534093	4.88464991066142	4.82230661835711	0.0313449467162905	0.938709204686799	0.986515091506254
Merged-chr4-43466137-4	chr4	43465635	43466635	+	972.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11509.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	7.28285095792836	7.3253897329415	7.00751489804449	7.06048413077801	7.13227986247936	6.78009017300375	-0.317645662180208	0.219884406858138	0.61423936831415
Merged-chr16-11134713-4	chr16	11134192	11135192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-160.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	8.43873927415473	8.46739973899595	8.14335361054596	8.1604516697164	8.31128125491452	8.2190065086182	-0.182679860327567	0.403392179080701	0.77875989555314
Merged-chr9-123480744-4	chr9	123480247	123481247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	2046.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	4.30423633254245	4.27896632498937	4.37068509043891	4.35101547619035	4.11967102718447	4.4787384178495	-0.00476832493641767	0.991712703617887	0.998351393644539
Merged-chr4-135285824-2	chr4	135285220	135286220	+	759.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12960.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	2.38512715446619	2.20906153850856	2.68574504940126	2.28794180887432	2.17300701298997	2.12079871684967	-1.63133948454669	0.0821145724766206	1
Merged-chr1-87637678-4	chr1	87637169	87638169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110192, intron 2 of 26)	MLT1M|LTR|ERVL-MaLR	17357.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	6.64934977977247	6.96425912297072	6.94117474615414	6.70162438442075	6.92056771499932	6.90256352389934	-0.0171252284685918	0.947992691506045	0.988024000499268
Merged-chr11-68521568-4	chr11	68521072	68522072	+	974.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004435, intron 2 of 19)	intron (NM_001004435, intron 2 of 19)	18553.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.49728846746086	4.10399984820708	4.63381519047438	4.41617593999386	4.27740502601833	4.90599293763413	0.315989016979407	0.524798192083492	0.848833934932934
Merged-chr7-19269121-1	chr7	19268621	19269621	+	785.0	f0_c57.idr	intron (NM_009499, intron 1 of 12)	MIR|SINE|MIR	2733.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	6.15483053498796	6.31826829179452	6.62545038317125	6.28400622495009	6.44165490073018	6.81561808036622	0.249251924658786	0.417301087411903	0.787951515900482
Merged-chr2-126496464-4	chr2	126495950	126496950	+	885.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3397.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	5.58381834166194	5.69174010473647	5.88009718256927	5.12339383207069	5.09679204978986	5.10227530195483	-1.19210869138804	0.000519495892838071	0.0107960806859466
Merged-chr3-28026341-4	chr3	28025824	28026824	+	693.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008875, intron 3 of 25)	RMER10A|LTR|ERVL	42153.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.88694280870566	4.92943764758881	4.96080958660258	5.40513796660579	5.33799714320081	5.75326938594727	1.17323679451281	0.00142965272448041	0.0238574361879084
Merged-chr11-100369967-4	chr11	100369468	100370468	+	968.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13827.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	6.09374077658992	5.98368422605394	6.07042553673494	5.94118995207883	6.24612654144285	6.17358183757775	0.139424056556403	0.634314193811042	0.896320504181421
Merged-chr9-65022189-2	chr9	65021689	65022689	+	976.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	-472.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	6.74019655267093	6.82235839371728	6.65715278276427	6.75890783282503	6.89921126933262	6.68287647974485	0.0694373305278175	0.785163038829123	0.947850129107983
Merged-chr8-105634730-2	chr8	105634230	105635230	+	714.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_151742, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	-1808.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	2.87644327074491	2.6135081330902	2.90452925635935	2.66829549288223	2.73778690457257	2.79826388240843	-0.348683109300052	0.638465010960271	0.897576536084903
Merged-chr15-96699057-4	chr15	96698535	96699535	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355633, intron 1 of 14)	CpG	693.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	8.76126579675725	8.88574711443803	8.3900710624749	8.66215684164208	8.40494553639853	8.30963968484485	-0.32039859121601	0.182490285657981	0.565355871271703
Merged-chr10-34234676-2	chr10	34234176	34235176	+	742.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27125.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	4.71167547913994	4.48208141757779	4.31811963483502	4.60624681675877	4.4195983073603	4.52199967703248	-0.019603039793542	0.96453715104927	0.991478598183903
Merged-chr17-32738651-4	chr17	32738151	32739151	+	995.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	48896.0	NM_001346705	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	4.43873507127941	4.6024566659038	4.41719629069406	4.99348602052775	4.75620740873118	4.78084775962751	0.832948767373341	0.0452522501380613	0.268483983896748
Merged-chr5-122502994-4	chr5	122502506	122503506	+	914.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-781.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	5.13779157700894	5.01572049538545	5.06963042446747	4.89086752646615	4.73447759380332	4.92348142056577	-0.504554841341575	0.180369586791757	0.562179561184932
Merged-chr3-27938587-4	chr3	27938112	27939112	+	777.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164056)	promoter-TSS (NM_001164056)	-68.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	3.99831209021191	3.98499839980806	4.17313601572054	4.03239313286087	3.70034754883088	3.91321927667752	-0.503982660702318	0.32702985146325	0.719317370353337
Merged-chr11-16956681-4	chr11	16956157	16957157	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5247.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.50997852925462	5.44618681682829	5.63841467335261	5.85774482212106	5.86789444552968	5.80444690918703	0.58697250122487	0.0589891352989422	0.314363012994957
Merged-chr15-57883934-3	chr15	57883437	57884437	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	8481.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	5.81841035848471	5.49619034466798	5.59973992926189	5.63156808663102	5.65816727872064	5.45698222580817	-0.102498591447861	0.756273389549995	0.939545863427369
Merged-chr11-21009704-4	chr11	21009188	21010188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-81636.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.0912171931853	6.40914963765982	6.51285600216674	6.26926377045363	6.66032387038123	6.46735300509439	0.224113033310482	0.451821791698529	0.809245753174589
Merged-chr13-23555094-4	chr13	23554604	23555604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145713)	promoter-TSS (NM_145713)	72.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	5.97301660425687	6.18934835459699	6.31396931590861	6.33381722331113	6.80568550848158	6.81635812968894	0.832711354998636	0.00566105964795166	0.0668528883319275
Merged-chr12-76765650-4	chr12	76765148	76766148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154884, intron 1 of 2)	CpG	110.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	7.91865507099068	8.31112578459461	7.62918539596811	8.23408868385384	8.17477225230227	7.57302979644712	0.0604274051302828	0.838287143011572	0.962493207106836
Merged-chr3-116659165-2	chr3	116658665	116659665	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008246, intron 1 of 11)	intron (NM_008246, intron 1 of 11)	3512.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	3.69154598239991	3.50338713079186	3.60944755741996	3.76230210440855	3.6554440478136	3.26605460334104	-0.065225272989486	0.914652088194818	0.980912729144991
Merged-chr9-121572054-4	chr9	121571556	121572556	+	854.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14964.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	4.4025930021442	4.71497604650249	4.91209331344393	4.54490152833439	4.41294517488875	5.16098367548611	0.118132034280918	0.806251294545302	0.954125791654011
Merged-chr10-8839760-1	chr10	8839260	8840260	+	842.5	f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	RSINE1|SINE|B4	46310.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.48934797628046	3.98210205476787	4.99233044742039	4.2757081019637	4.16947577648029	4.83668971898513	-0.224182335113838	0.689990335978165	0.917575769155684
Merged-chr13-23911519-3	chr13	23911020	23912020	+	936.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177016, intron 1 of 11)	Lx8b|LINE|L1	3487.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	2.41616077208543	2.5079449022271	2.60024552833832	2.32653540277014	2.45650142302751	2.55038815021051	-0.37545768594635	0.641959615954299	1
Merged-chr14-75863936-4	chr14	75863418	75864418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15995.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	5.99899727440065	6.15569826518641	5.84833643999527	6.200163274554	6.31395945727325	5.56254813625641	0.116994185537596	0.736809247055198	0.933284983163126
Merged-chr5-127605414-2	chr5	127604914	127605914	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	11978.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	2.94193745974916	2.77549515696642	3.05917140974048	2.90473923086906	2.88182237215007	2.77182492322511	-0.341365857877911	0.631790475497812	0.895284049434373
Merged-chr19-42130863-4	chr19	42130396	42131396	+	987.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1903.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	6.74251356796211	6.53219227131764	6.60628076296752	6.11250691454294	6.18631400725948	6.1781368273003	-0.770824249987643	0.0044779267675995	0.056677719878068
Merged-chr16-17702562-2	chr16	17702082	17703082	+	870.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001285886, intron 2 of 16)	ORR1C1|LTR|ERVL-MaLR	20318.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	3.57759722463724	3.53460148926002	3.48612233775741	3.3261723981959	3.6264086047192	3.38760188946158	-0.266937002025221	0.653299864166977	0.903301402442809
Merged-chr7-141559826-4	chr7	141559361	141560361	+	800.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2319.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	6.00917400414305	5.9872640373569	6.47893105357685	6.22509861035343	6.03029197909521	6.25013647778002	0.00164005584059024	0.995805582733524	0.998961028701257
Merged-chr8-70600745-6	chr8	70600182	70601182	+	949.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133772, intron 4 of 16)	intron (NM_133772, intron 4 of 16)	6201.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	3.89003397764334	4.06316412745622	4.2643012703222	4.19059510407245	4.30630021869869	4.24376685376131	0.498692616608305	0.299912577979406	0.696642448453755
Merged-chr9-95857630-4	chr9	95857121	95858121	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	24.0	NM_019864	245000.0	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	7.56497172316795	7.66640721872895	7.4064895176044	7.52287631978073	7.71146343965387	7.24234046078592	-0.0556995421119027	0.82395920255722	0.958461473318254
Merged-chr11-22632500-1	chr11	22632000	22633000	+	555.0	f0_balb.idr	Intergenic	Intergenic	120217.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.15820156426866	4.15366432880367	3.81125215891387	4.28387035223464	3.83695283458637	4.23249709540507	0.19668504734777	0.709543628627824	0.92401439884764
Merged-chr13-33935783-5	chr13	33935309	33936309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040707)	promoter-TSS (NR_040707)	-223.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	7.79437130029101	7.9899263168117	7.83158965722061	8.23510787870959	8.48454454611324	8.05994778167442	0.568048495486308	0.0143390714604356	0.128791608169249
Merged-chr7-135710467-4	chr7	135709976	135710976	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081117, intron 4 of 13)	intron (NM_001081117, intron 4 of 13)	5903.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.35413174739946	3.96192374629436	4.37715660756706	4.05364433298674	4.30904285077129	4.52308584601633	0.171699298191176	0.730102575889127	0.930751044681856
Merged-chr14-120307105-4	chr14	120306548	120307548	+	923.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	596.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.89790653321439	4.93723818885243	4.86343862970724	5.14301338686184	5.09870579646364	4.89110265152647	0.331864065270264	0.37667968668948	0.759336465825071
Merged-chr13-64162654-3	chr13	64162190	64163190	+	791.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019986, intron 1 of 7)	intron (NM_019986, intron 1 of 7)	824.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	4.02515900929153	4.18921860334646	4.05946024731662	4.41180758609392	4.23932197456413	4.27040279035342	0.590353489581889	0.207283180938301	0.598045038818104
Merged-chr1-35973392-2	chr1	35972892	35973892	+	721.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95008.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	2.17392526651025	2.21184635638841	2.12194661645642	2.26791821885778	2.14077552121387	2.45862764478843	0.823544595559841	0.352675589784358	1
Merged-chr3-121968008-6	chr3	121967521	121968521	+	993.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356524, intron 1 of 22)	intron (NM_001356524, intron 1 of 22)	215.0	NM_001356524	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	3.1200788538056	3.06555344969373	3.07780763443055	3.11125712013195	3.06997121255899	2.83617626289596	-0.322136087950102	0.637290216753153	0.897338937840938
Merged-chr2-83711113-1	chr2	83710613	83711613	+	918.0	f0_balb.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13284.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.22906483544341	3.40352838911228	3.3279368655413	2.97174755593471	2.85690012088754	3.11588882465204	-1.57456345573966	0.020433896003997	0.163754562140093
Merged-chr19-46483129-4	chr19	46482641	46483641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-18507.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.69501207476782	6.70445744994143	6.78951105147177	6.83951185941052	6.84850783935372	6.80283436521272	0.164007972224426	0.505535382004598	0.838177729332582
Merged-chr16-16473553-3	chr16	16473067	16474067	+	756.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 7 of 16)	RLTR10D2|LTR|ERVK	53844.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	4.07986911246388	3.70255254153068	3.94623898227553	3.6480357321016	3.47672259550371	3.76947886238012	-0.958705281455969	0.0859489612601072	0.388215443244267
Merged-chr4-141952347-4	chr4	141951854	141952854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177868, intron 12 of 31)	intron (NM_177868, intron 12 of 31)	-30638.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	8.14968483898325	7.72897902413738	7.76801328478618	7.97088223054933	7.88145718168167	7.85811024962718	0.00550428756904185	0.981532380695224	0.995717195177154
Merged-chr11-22860526-4	chr11	22860030	22861030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001169114)	promoter-TSS (NM_001169114)	-194.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.47012439445816	6.63534911119683	6.7332126021855	6.23569164064008	6.62638577696905	6.21899849045582	-0.361908059465861	0.214662885195135	0.607849901355003
Merged-chr5-122219196-4	chr5	122218679	122219679	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	8892.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	4.2774000569149	3.59622240735939	3.74325735476149	3.71807717759234	3.7565834365434	3.46652668225226	-0.813981803803635	0.183841425336102	0.567244140856875
Merged-chr13-99306382-4	chr13	99305880	99306880	+	885.7708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38298.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	2.63862130880515	2.53293653092143	2.57134657366213	2.7241673894036	2.63278292957854	2.89094690802578	0.916974286217005	0.227901450093439	1
Merged-chr1-118321799-4	chr1	118321331	118322331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-12.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	6.33343371044715	6.62513936954506	6.19569938799726	6.23679404901891	6.22143990033245	5.72842252955984	-0.513989296400973	0.11049062618123	0.444183207231991
Merged-chr16-32200683-3	chr16	32200133	32201133	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20833.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	3.91376023248418	3.75856898470059	3.7423649479035	4.1968141364924	4.89124078881636	4.50451726868975	2.12718972715017	6.55121626947364e-05	0.0019793522271255
Merged-chr2-165889012-4	chr2	165888528	165889528	+	915.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-4190.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.38583110443773	5.1680526424335	5.33741391885181	5.30805819612943	5.46352029153229	5.30700949058233	0.138561223626896	0.688182018426376	0.917193226920892
Merged-chr12-8637143-4	chr12	8636634	8637634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37000.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	4.64603363845661	5.22673493916806	5.03354793458121	5.26669935075966	5.85126902915132	5.20600239084413	0.988611135899487	0.0202369160579839	0.162708794217096
Merged-chr13-113600141-4	chr13	113599624	113600624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	18440.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.78774926704305	6.41083507862207	5.89487189426899	6.32542301961858	6.39789556109547	5.56279635235407	-0.437723731998545	0.271969517768569	0.669408969842249
Merged-chr16-5012665-2	chr16	5012165	5013165	+	988.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133185, intron 2 of 10)	intron (NM_133185, intron 2 of 10)	888.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	4.95647026086723	4.85427540034438	5.04851310836786	5.03443784161853	5.01062256297086	4.65231195678009	-0.0617247523817429	0.875807997822912	0.971136321106511
Merged-chr17-87257687-3	chr17	87257188	87258188	+	749.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176808, intron 3 of 4)	intron (NM_176808, intron 3 of 4)	8259.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	4.51575638935266	4.58683133199443	4.86149048062445	4.06575601899197	4.18604822810129	4.21731251846724	-1.29642900366221	0.00481579857214656	0.0596831944580237
Merged-chr11-69258596-4	chr11	69258154	69259154	+	842.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-21632.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	5.6357873726281	5.67039126190296	5.56728127544405	5.60845139302427	6.14274531534096	5.658996105679	0.388993214349666	0.255681895376492	0.652740746494253
Merged-chr13-30582731-4	chr13	30582222	30583222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32321.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	4.16605405969585	4.02175070167023	4.1767338021716	4.2514123832656	4.20077561841412	4.15167858022407	0.234401739010131	0.616343207972597	0.888323384760338
Merged-chr14-33202339-4	chr14	33201851	33202851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14472.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	6.60025213087286	6.48610433840945	6.48780053570322	6.01391306408365	5.96702365321953	6.24797848950946	-0.758489026685469	0.00659967993083821	0.0748767613424033
Merged-chr14-118132798-4	chr14	118132288	118133288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029578)	promoter-TSS (NM_029578)	-23.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	4.51208555971785	4.68567101760119	4.80756436963156	4.65682355421041	4.56644942379961	4.60494259476709	-0.140774319424914	0.734024240376883	0.932325051544019
Merged-chr11-51620573-2	chr11	51620073	51621073	+	868.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_026631, intron 2 of 3)	intron (NM_026631, intron 2 of 3)	800.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	6.52975621633835	6.67651342522246	5.85132944972307	6.33313641043413	6.24995547596306	5.85906787589372	-0.398038082858755	0.259667421809782	0.657223042078191
Merged-chr11-116622918-2	chr11	116622417	116623417	+	731.0	f0_c57.idr|f1_c57bl6.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1335.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	6.72557381412703	6.45367109161077	6.64764067441359	6.99779179546375	6.97327521381775	6.62178559513049	0.425242982684997	0.117383819607252	0.457504935213837
Merged-chr2-11496886-4	chr2	11496378	11497378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	MTEb|LTR|ERVL-MaLR	5212.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.1226573040273	6.02677532581246	5.90847786657927	5.95780755215537	6.02997552525307	5.84444835417014	-0.13017781091506	0.660117945711095	0.905894381388498
Merged-chr15-64197191-3	chr15	64196669	64197669	+	806.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	115504.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.46989696116538	5.49961082566387	5.12080294455979	5.6789712239436	5.86521608148912	5.76966560710195	0.723410029304102	0.0330696895153829	0.221747338640985
Merged-chr7-7121039-4	chr7	7120530	7121530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172738, intron 1 of 4)	intron (NM_172738, intron 1 of 4)	446.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	6.14540469149355	6.5291733841419	6.56744453625901	6.36756468506053	6.30664844059777	6.10720507010413	-0.250270292658509	0.39797187443886	0.774751853640649
Merged-chr14-60444367-4	chr14	60443876	60444876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR40|LTR|ERVK	66090.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	5.28097068421997	5.56188494363506	5.63856546548153	5.83347299361559	5.66006517974458	5.8269301039972	0.510318413562862	0.12160377646639	0.466479509115087
Merged-chr7-118232706-3	chr7	118232152	118233152	+	614.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 1 of 62)	intron (NM_001031814, intron 1 of 62)	10985.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	3.9121591519405	4.1210833919628	3.82585592854296	3.84573131640991	3.91275193994207	4.04515454525911	-0.100473622531227	0.844518340449087	0.96373428957366
Merged-chr11-85811374-4	chr11	85810906	85811906	+	905.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20982.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	4.58162323399302	4.87075813335947	5.2333145848556	4.47542548947619	4.4532984238663	4.78579940545777	-0.789866335574514	0.0778916102675095	0.368522494293451
Merged-chr10-115313541-2	chr10	115313041	115314041	+	682.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	2050.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	3.15383822716261	3.07181533466314	3.08457665107152	3.03624005300088	3.00749430238773	2.97601027733381	-0.441315556793128	0.502565969350908	0.836562439638842
Merged-chr10-88564280-1	chr10	88563780	88564780	+	719.666687	f0_c57.idr	intron (NM_175418, intron 8 of 28)	intron (NM_175418, intron 8 of 28)	40872.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	3.02977835520958	3.37576478163591	3.3109185036734	3.32029645143205	3.23049907802524	3.32639544591082	0.176722147079555	0.781558572503761	0.946246819163951
Merged-chr15-73612933-2	chr15	73612433	73613433	+	937.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	4391.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.11878032962421	5.3990551358782	5.46746973034808	4.96519042175096	5.04933661653124	5.50242795051787	-0.304213477036486	0.43034023679221	0.796220434934334
Merged-chr11-50291612-4	chr11	50291088	50292088	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	748.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	8.86276595573048	9.18352343268071	8.74839312948806	8.88655155060541	9.04661405728116	9.0384871384575	0.0588604414532652	0.789917411592779	0.949311112850285
Merged-chr8-111570643-3	chr8	111570142	111571142	+	901.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	L1MEd|LINE|L1	32299.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	2.62962682195512	2.81831752884954	2.53123088977898	2.70384160999371	2.63148142879049	2.85567871620207	0.321453679382777	0.677341426094324	1
Merged-chr14-27497827-4	chr14	27497347	27498347	+	828.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177111, intron 6 of 17)	MIR|SINE|MIR	10613.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	3.4058267225328	3.48127270285745	3.33089466786228	3.54280071542765	3.64615747757139	3.6784384407727	0.767509476926763	0.182723804478585	0.565548610698318
Merged-chr17-24220793-4	chr17	24220294	24221294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	57.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	6.22423389554941	6.44215011741057	6.12355657926962	5.91834873109629	6.23213283659571	5.70420934773102	-0.489575213266558	0.127556669659385	0.477408032071704
Merged-chr5-14049226-3	chr5	14048731	14049731	+	949.9166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011348, intron 1 of 16)	L3|LINE|CR1	23955.0	NM_011348	20349.0	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	2.02859627878755	2.13025571983582	2.23424787992985	1.96688472183546	1.93554796907113	2.04720931576184	-1.20030668756727	0.202388116786182	1
Merged-chr19-16132556-4	chr19	16132059	16133059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008139)	promoter-TSS (NM_008139)	-272.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.02847950202332	6.60872963282935	6.84717571540323	7.17645082600917	6.7625875596573	6.70273360207924	0.0951476866707016	0.740907370434698	0.934712654423072
Merged-chr10-25365343-2	chr10	25364843	25365843	+	785.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	5545.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.35226864049065	4.1169649185756	4.6133545742321	4.41562685036789	3.97855065311964	4.48724709377184	-0.167668352907414	0.738364457149424	0.934032187674406
Merged-chr7-75684424-2	chr7	75683924	75684924	+	727.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-163914.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.72080519141234	3.64832232473113	3.4253042699982	3.53659844625039	3.45817585381605	3.55424509072088	-0.346776659212876	0.545788606032282	0.85834429351586
Merged-chr7-118704432-4	chr7	118703986	118704986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1252.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	6.84251862077261	6.73649081790466	6.49004322815654	8.06768568337706	8.20540194139949	7.53745916287579	1.87344233009338	3.75900615272671e-11	5.44911818738822e-09
Merged-chr4-8804107-3	chr4	8803618	8804618	+	965.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	52794.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.26217378183135	4.34835670331055	4.31665310552084	3.95841595716493	3.83573823397481	3.96500822877827	-1.14741514902618	0.0173759113462342	0.147126776360787
Merged-chr13-111943639-2	chr13	111943139	111944139	+	771.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75703.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.60797644582285	4.52548949668068	4.1827703906697	4.22192620088371	4.20521319437535	4.10129574038702	-0.7445231378625	0.113781503942722	0.450598799679503
Merged-chr14-26455077-4	chr14	26454583	26455583	+	962.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 12 of 22)	intron (NM_001310445, intron 12 of 22)	79541.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	3.49689532688904	3.35599503030748	3.5520628433323	3.40065362813467	3.07479009956029	3.3531835987087	-0.747151984565336	0.232256809165372	0.628567780051626
Merged-chr19-37435894-4	chr19	37435410	37436410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1069.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	6.28024891116832	6.6179963042412	6.8529403241522	6.63977587126979	6.76980064763242	6.73648443957669	0.192099149077755	0.501145911214948	0.835440646332086
Merged-chr1-161500953-4	chr1	161500449	161501449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	6292.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	7.33646224305598	7.255526307936	7.10588399872162	7.29437842961834	7.40217503984902	6.95583947605916	0.00190790204354006	0.99405007441004	0.99890003612761
Merged-chr15-5495659-4	chr15	5495154	5496154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-664.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	6.41304134702567	6.60296099254027	6.69542769473515	6.50327463249594	6.59706691411117	6.43141067316865	-0.083911658233982	0.75458238290169	0.939008487312488
Merged-chr11-26604443-4	chr11	26603934	26604934	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10514.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	6.42556079703771	6.42158666051942	6.27827603146549	7.06323358410323	7.07517895663961	6.74392639185886	0.93674731480376	0.000433354058353141	0.00939024075193963
Merged-chr17-25985255-1	chr17	25984755	25985755	+	637.333313	f0_balb.idr	intron (NM_001347334, intron 1 of 11)	CpG	541.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	7.44280595864077	7.62845214406735	7.62616378796203	7.70990823418161	7.84730226983716	7.45450318474932	0.177706599727667	0.456745775568481	0.811822155193116
Merged-chr6-50111202-2	chr6	50110702	50111702	+	741.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	342.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.9079339760918	6.33869659855958	6.01179783306854	5.43264234031454	5.8093519783142	5.39200409997699	-0.94347530666318	0.00661426879602123	0.0749780020538483
Merged-chr10-84390509-4	chr10	84390033	84391033	+	949.479126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49938.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.92559998593251	5.87437504802026	5.51877723189708	5.99070637023469	5.93180617557997	5.91180433860951	0.259797316932906	0.409296119772698	0.782658446423422
Merged-chr9-65536276-4	chr9	65535772	65536772	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43815.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.03871498901563	8.0256745548348	8.08752596664464	7.8844301940808	8.28261592716431	7.92967949560109	0.00361310088188868	0.9875033822637	0.997218304929226
Merged-chr18-60718806-2	chr18	60718306	60719306	+	620.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	8760.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	3.29916705116803	3.26715436066753	3.62789856025944	3.37437141574532	2.97939445397326	3.15902337596391	-0.904178088332888	0.175131532186682	0.554862145611295
Merged-chr12-24650594-1	chr12	24650094	24651094	+	846.8333130000001	f1_balb.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-777.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	6.52403853954563	7.23912425265359	6.99753766114383	6.60340129084724	6.38780701911509	6.57985288190002	-0.67810048788605	0.0257649894113185	0.190344778383822
Merged-chr6-149188775-4	chr6	149188267	149189267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-55.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	8.07168053470117	8.30271424013325	7.78098948896842	8.0534378648051	8.27361559371915	7.93014389403186	0.0312705518463527	0.899998560770927	0.976728292075907
Merged-chr18-77868585-4	chr18	77868060	77869060	+	980.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013831, intron 6 of 14)	ID2|SINE|ID	-69907.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	3.88588294791274	4.01129595362118	3.7727847306834	4.61993408991458	4.17199900730603	4.21183038167121	1.27581680309115	0.0132664392247249	0.122362886674726
Merged-chr9-38724216-4	chr9	38723715	38724715	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	5947.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	4.05472001677551	3.84988012811142	3.83841537302509	4.03996464580273	3.85936729566514	3.69047977711831	-0.141498531396483	0.788949316852922	0.949092571737679
Merged-chr6-83033580-4	chr6	83033076	83034076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-105.0	NM_001291799	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	8.49171333271777	8.72389308114884	8.17806754994164	8.50086984044886	8.55261734569838	7.98695068958814	-0.154780777980615	0.561559094812106	0.865428381262516
Merged-chr11-29692233-4	chr11	29691715	29692715	+	990.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-683.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	5.0866385578334	5.33503053252071	5.16995488234131	4.54672201788412	4.83652330373044	4.84997299224949	-0.979925241435448	0.012504123328745	0.11765924254448
Merged-chr5-115528927-2	chr5	115528427	115529427	+	647.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	22251.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	5.53634896033346	5.35871820463423	5.52454292223915	5.45979183580977	5.40710749690408	5.81583751516525	0.167918609019901	0.62460181282145	0.892121293039105
Merged-chr16-35921885-2	chr16	35921385	35922385	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-16585.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	4.50660733695409	4.75944918997724	4.83880500474448	4.84348652250023	4.7740969132009	4.75392168532831	0.20483973736978	0.613287962290156	0.88716233664643
Merged-chr3-55829018-4	chr3	55828519	55829519	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030595, intron 38 of 57)	intron (NM_030595, intron 38 of 57)	-18086.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	4.46736044655542	4.54305821291058	4.37648102795855	4.42518792087856	4.32059722791951	4.21156696102346	-0.371104148003523	0.402667993359062	0.778169663804428
Merged-chr14-60916849-3	chr14	60916369	60917369	+	856.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	121118.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	3.41272205047559	3.14024353053197	3.6388800560836	3.44363526796748	3.66415382192602	3.60695756697207	0.624442731875362	0.313296528412835	0.707890553852582
Merged-chr17-47769917-2	chr17	47769417	47770417	+	975.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-15827.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	7.04255342473356	7.1435969303596	7.07136289671228	7.49127084957659	7.45200482070746	7.00591953736211	0.383847712152843	0.13577300023732	0.492518955608463
Merged-chr9-31130973-3	chr9	31130486	31131486	+	777.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	813.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	2.72064574607522	2.71076583881149	2.78736630775752	2.76304641977805	2.76384654207171	2.85986284166662	0.293735312694104	0.681292204916695	0.914662651048893
Merged-chr6-83653337-8	chr6	83652827	83653827	+	949.0083619999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016751, intron 3 of 6)	intron (NM_016751, intron 3 of 6)	2789.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	7.18916674134893	7.49254360450734	7.29844879177988	7.35480519250186	7.37674992653719	6.89362087955404	-0.14477729795122	0.58644156947746	0.875542858146529
Merged-chr11-23822724-2	chr11	23822224	23823224	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51754.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	7.08228405464778	6.98045349474568	7.06812603580361	6.52611206093513	6.81714348307838	6.8107157528919	-0.489948446302513	0.0545262357306611	0.299897180661191
Merged-chr15-86205493-4	chr15	86204983	86205983	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-8976.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.19054970761637	5.15464337198889	5.26033368732066	5.46576350563899	5.1812854425912	5.55576864212623	0.400348322741764	0.259879707685841	0.657466424965747
Merged-chr19-6418686-4	chr19	6418202	6419202	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-36.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	4.92087475631255	4.59042306830024	4.8540914039149	4.78468986746122	4.74844968995932	4.7294434872365	-0.0872582040100236	0.828929428072514	0.959925957873127
Merged-chr4-148676803-4	chr4	148676302	148677302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33485.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.88206194991245	4.90512653123142	5.14328365227425	5.88285946749154	6.03138258419283	6.04093439769116	1.96558367394586	5.27810734885399e-09	5.11269797768851e-07
Merged-chr12-73370062-2	chr12	73369565	73370565	+	909.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_046013, intron 3 of 3)	intron (NR_046013, intron 3 of 3)	39498.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	2.37461346860091	2.39064390917151	2.46703997198349	2.60239815040537	3.07066057105368	2.86436286926777	2.85131344783191	0.00139666540177578	0.0234207446092219
Merged-chr7-16398574-4	chr7	16398099	16399099	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2597.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	4.92560335318445	4.69347176343375	5.12240101244723	4.65869882125434	4.62368172892851	4.99355643134377	-0.356916096522282	0.392097562952937	0.770891120887197
Merged-chr2-166305167-4	chr2	166304677	166305677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31269.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	5.52874497080352	5.49640522356035	5.28454481811438	5.4701200113265	4.91711492116788	5.37991142134255	-0.351154927823943	0.351375466344682	0.739266474591224
Merged-chr17-88042624-4	chr17	88042116	88043116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	22316.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	6.38464884067553	6.47253591489542	5.87416909878314	6.48508562539708	6.43281601854347	6.13660713365909	0.136887862566628	0.666598093431124	0.9082780021178
Merged-chr7-84689990-4	chr7	84689500	84690500	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360577)	promoter-TSS (NM_001360577)	-43.0	NM_001360582	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	7.97028041107514	7.42065483712623	7.42805275919861	7.81357826726757	7.12831537846958	7.36416723847287	-0.24614708354622	0.417177281200816	0.787810067953283
Merged-chr17-31076524-1	chr17	31076024	31077024	+	657.0	f1_balb.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	18830.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.56665205633468	7.66835291780449	7.40082819449236	7.33112251762375	7.42014446227585	6.88606458699891	-0.454915125572214	0.0843950844551337	0.384491140349472
Merged-chr17-24885477-1	chr17	24884977	24885977	+	1000.0	f1_balb.idr	exon (NM_001355396, exon 3 of 7)	exon (NM_001355396, exon 3 of 7)	873.0	NM_001355396	26426.0	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	4.63831540900116	4.67609887940969	4.56912439928749	4.56531215190304	4.73191594766132	4.55138652196128	-0.0138543525123857	0.973221013888511	0.994009507000273
Merged-chr6-97971582-4	chr6	97971084	97972084	+	774.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 2 of 9)	intron (NM_001178049, intron 2 of 9)	-20199.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.65627925846641	4.89715639735348	4.76116031375395	5.02332616469752	4.95759273535649	4.90396623269462	0.414859240929604	0.284816449133387	0.682457480121006
Merged-chr14-20785487-1	chr14	20784987	20785987	+	800.666687	f0_balb.idr	intron (NM_001039139, intron 2 of 18)	intron (NM_001039139, intron 2 of 18)	8601.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	3.09447958741178	2.78983860872261	3.02073051517307	2.91979660651394	2.76934779058054	2.85344888990728	-0.626283329900364	0.380411020096531	0.762534569734688
Merged-chr19-3854390-1	chr19	3853890	3854890	+	1000.0	f1_c57bl6.idr	intron (NM_001271496, intron 1 of 11)	intron (NM_001271496, intron 1 of 11)	2617.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	2.74079166594277	2.54562564951974	2.44599113370564	2.66801954965586	2.47116279212739	2.71611574722672	0.182337719129525	0.819965623163787	1
Merged-chr2-59188342-2	chr2	59187842	59188842	+	709.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	27492.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	6.13980176982091	6.05605177547249	6.2473782159529	6.2844459890004	6.41992074593096	6.34636345376119	0.351228749333066	0.204550045091056	0.595153512551109
Merged-chr2-29625852-2	chr2	29625352	29626352	+	661.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	6132.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.30002082225691	4.88864442085069	4.73433196937002	4.78836587044352	4.73460373018657	4.49156577336656	-0.718430394056596	0.0954737362979995	0.411857121795822
Merged-chr10-96466162-4	chr10	96465678	96466678	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-150823.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.02338105556335	7.2597494038059	6.98449637183936	6.71236598738117	6.90953802786498	6.88791828451657	-0.397723722057433	0.116619988021101	0.455980262358903
Merged-chr8-35792137-5	chr8	35791627	35792627	+	957.392395	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	34432.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.04770760842919	4.48338451437226	4.56150551051675	4.44505946847519	4.48924031455525	4.50729992556472	0.260195018878347	0.575999506666247	0.871496930818991
Merged-chr4-3676278-1	chr4	3675778	3676778	+	548.0	f1_balb.idr	Intergenic	Intergenic	-1843.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	3.04820759251405	3.19697263891527	3.34247840381107	3.46505591736646	3.10372995434424	3.66865482939783	0.904067256982625	0.173240475618679	0.551957215225209
Merged-chr17-73034608-4	chr17	73034110	73035110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73375.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	8.03220125163992	8.3342937790827	7.8100182702225	7.97165041979117	8.38759540315337	7.93306099625634	0.0535254870712325	0.838600502037315	0.962538562826178
Merged-chr15-99823560-4	chr15	99823078	99824078	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-3429.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	6.39807551654781	6.26240369693045	5.75109236983406	6.02364859104846	6.12976233258991	5.63720618520289	-0.373647406458005	0.281479181870522	0.67967073158435
Merged-chr1-165689996-1	chr1	165689496	165690496	+	716.0	f0_balb.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	18098.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	3.97029120590865	3.80059560496444	4.21033090036071	4.02779276919862	3.73931863848224	4.00956757556966	-0.211690511677733	0.687406475171985	0.917144519940841
Merged-chr14-122109134-4	chr14	122108668	122109668	+	782.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	2086.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	5.10092463763754	5.4723663054583	5.24006616338637	5.37632984465738	5.4448162718017	5.67650806976402	0.415823584804333	0.2435795205936	0.640776628186919
Merged-chr12-102438726-2	chr12	102438210	102439210	+	705.5	f0_balb.idr|f0_c57.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1103.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	8.36618319292903	8.59401152553159	8.22821505065619	8.56241973436409	8.83732965062739	8.30972527347385	0.257181912572234	0.292752633830099	0.689885476081214
Merged-chr15-78244088-3	chr15	78243572	78244572	+	684.027771	f0_balb.idr|f0_c57.idr|f1_c57bl6.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	-739.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	5.37984059984091	5.38112419447147	5.60184833012672	5.37178794170402	5.40096356087926	5.61101079745833	0.0155058295091175	0.963330382248877	0.991095051079597
Merged-chr18-4343501-4	chr18	4342884	4343884	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	9569.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.59354519225163	5.79632850943514	5.82680046702852	6.00112091131656	5.71313602141458	5.62422722286843	0.097407922548761	0.763258555253727	0.941755506558843
Merged-chr8-119827971-4	chr8	119827476	119828476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	12603.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	6.80014378957182	6.69135844237718	6.76845609442892	6.97177008003184	6.96648498258283	6.85713308966907	0.284438304295522	0.246627197085442	0.643766848043588
Merged-chr5-102071388-4	chr5	102070852	102071852	+	882.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1431.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	7.55518583678106	7.52086076490604	7.71560068833834	7.89517545696486	8.00079009959899	7.69192523977003	0.403365088144005	0.0773486410245295	0.366808715511744
Merged-chr19-45030713-6	chr19	45030067	45031067	+	897.680542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195265, intron 10 of 15)	MIRb|SINE|MIR	12432.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	3.923454348184	3.52226148571722	3.49471832474202	3.5862200797725	3.34973380635562	3.56696358878586	-0.588780600936365	0.325507686058675	0.718159390122652
Merged-chr18-65671160-3	chr18	65670663	65671663	+	926.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-27105.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.80645548791112	5.16625248635745	4.34954190741902	3.53524842405481	3.38579033829262	4.02183468941653	-3.4212857433739	0.000496448977273143	0.0104494334049023
Merged-chr11-117962301-4	chr11	117961802	117962802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7064.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	6.84823899631005	6.61042074892381	6.52287748740627	6.59866152969754	6.36908506371165	6.61666798618561	-0.236030556757732	0.389196106698182	0.769015431167891
Merged-chr5-141079973-2	chr5	141079473	141080473	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-79377.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	6.4904182722892	6.09393312535261	6.13816412756044	6.1221643133134	6.42054316509441	6.15504320601487	-0.0177626496506251	0.953504826919035	0.989446911725587
Merged-chr7-118154163-2	chr7	118153663	118154663	+	840.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001031814, intron 48 of 62)	intron (NM_001031814, intron 48 of 62)	-24538.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	4.02641494418964	3.83358349324212	4.26176115492895	4.10077739443304	3.65421364614688	3.97015673861463	-0.383503830669415	0.478182460450796	0.823624523176113
Merged-chr11-87109883-2	chr11	87109383	87110383	+	799.416687	f1_balb.idr|f1_c57bl6.idr	intron (NM_025377, intron 1 of 3)	CpG	622.0	NM_025377	66140.0	Mm.45008	NM_025377	ENSMUSG00000020492	Ska2	1110001A07Rik|C78640|Fam33a	spindle and kinetochore associated complex subunit 2	protein-coding	4.40284442758392	4.39292042253391	4.1747161505479	4.57149080562759	4.26630111834291	4.88895110778542	0.64043231275925	0.179868841354872	0.561356228230283
Merged-chr9-98351583-4	chr9	98351081	98352081	+	956.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	55011.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	6.68745055635864	6.9995866372387	6.32032289810669	5.26631169100939	5.50781584270339	5.03644582405864	-2.45142680175963	5.6193851860557e-11	7.88495451199532e-09
Merged-chr1-191194794-4	chr1	191194283	191195283	+	711.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11450.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	5.83783937863035	5.60306754859749	5.47750424330261	5.79747162955848	5.49661858521396	5.71079056073762	0.0223284926408713	0.946673715591029	0.988007649185823
Merged-chr13-34002787-4	chr13	34002231	34003231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	63.0	NM_001243192	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	7.60610475073653	8.06376487683171	7.77404759349129	7.90151548469451	8.04537952172806	7.76091007341462	0.114802648610276	0.639725866138855	0.898199312621371
Merged-chr1-191910797-4	chr1	191910284	191911284	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009579, exon 2 of 2)	3' UTR (NM_009579, exon 2 of 2)	-3257.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	4.63652501287614	5.13590157017849	4.92454341584141	5.09014039562667	5.19790332061348	4.71090720411967	0.233862684416259	0.579875776187381	0.872644657556124
Merged-chr1-171346264-4	chr1	171345768	171346768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_012049)	promoter-TSS (NM_012049)	593.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	7.68216869042776	7.77386423722715	7.28924879694814	7.38736459277251	7.62487274535003	7.06001010660012	-0.316743259393308	0.253614438814013	0.650978681198768
Merged-chr5-101966997-3	chr5	101966491	101967491	+	795.083313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102930.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.54717944295733	5.61128348226366	5.78621332480696	5.30175938084009	5.35301090108149	5.32651405609495	-0.606336552898138	0.0672395169352638	0.33912387714568
Merged-chr4-132883823-4	chr4	132883361	132884361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	597.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	7.80321981636389	8.07927879641446	7.76852553751187	7.67015708080714	7.8933818432172	7.8333568755125	-0.132106107043786	0.56798570811143	0.868464227577425
Merged-chr11-63026785-4	chr11	63026268	63027268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22634.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	5.72387855294085	5.4785868839408	5.2604248099851	5.55961757741955	5.52433788287046	4.98789864121105	-0.219073615035327	0.569363568339137	0.8688875602138
Merged-chr10-80114224-2	chr10	80113724	80114724	+	820.75	f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1579.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	3.1270333582425	2.92176214211681	3.20428406838444	3.09473707489381	3.10976511536066	3.32956926785816	0.399680740779793	0.545191044062718	0.858043421312395
Merged-chr11-120071725-2	chr11	120071225	120072225	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009734, intron 12 of 25)	intron (NM_009734, intron 12 of 25)	15102.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	3.18656870105918	2.91467415146164	3.03416078522323	2.98739336982175	2.91162874196073	2.92430371286334	-0.511914868159526	0.45471866876378	0.810532225390276
Merged-chr14-52119299-5	chr14	52118749	52119749	+	900.7416380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023879, exon 4 of 25)	exon (NM_023879, exon 4 of 25)	8346.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	5.14482387838495	5.26605238248268	5.17671229944931	6.33851792104059	6.60242512397525	6.6154229431514	2.36208117552589	1.09169210712216e-13	2.48869909176495e-11
Merged-chr4-136032630-1	chr4	136032130	136033130	+	732.0	f1_balb.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10981.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	3.92904687629453	3.87603091840901	4.08037206625858	3.73558429089697	3.74379296952428	4.01188349199881	-0.409420142866974	0.430603579127333	0.796391700645191
Merged-chr4-86874295-4	chr4	86873780	86874780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290541)	promoter-TSS (NM_001290541)	-134.0	NM_001290543	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.3444635011645	5.57764524473502	5.57939743408635	5.0515531337784	4.99267605113519	5.06135078571154	-0.949457943925353	0.00706283111260984	0.0786830969631864
Merged-chr15-25633133-3	chr15	25632634	25633634	+	717.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019472, intron 1 of 40)	ID_B1|SINE|B4	10584.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	6.41663059915294	6.48425876303238	6.29631876052011	6.29249869538853	6.49805058100588	6.18824239640073	-0.102988566968002	0.713349634367948	0.925482720331284
Merged-chr1-162006269-3	chr1	162005748	162006748	+	909.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040562, intron 2 of 2)	intron (NR_040562, intron 2 of 2)	1279.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.00763181835225	4.82582623549482	4.75571659095197	5.11432555397614	5.07823660872024	5.18370920478757	0.533546682091054	0.156374652131531	0.526871641341125
Merged-chr9-103305155-4	chr9	103304664	103305664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176979)	promoter-TSS (NM_176979)	-163.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	5.87095046105094	5.88388977698991	6.23538452101963	6.31968576951342	5.89761961295398	6.58025737044334	0.493671259030819	0.144088501221241	0.506710013959755
Merged-chr19-33589762-4	chr19	33589272	33590272	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013770, intron 1 of 10)	intron (NM_001013770, intron 1 of 10)	539.0	NM_001013770	381236.0	Mm.491242	NM_001013770	ENSMUSG00000024766	Lipo3	AI747699|Lipo1	lipase, member O3	protein-coding	5.07607310973722	5.26875301735205	4.63155835048486	5.12203974319879	5.34496762618861	4.60738273862456	0.0919721627192385	0.841627860496371	0.962988975342446
Merged-chr13-110798377-4	chr13	110797864	110798864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-105135.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	3.43869597865014	3.16378191292994	3.36136624282813	3.20431034392321	3.55049202420624	3.26043791021254	0.116548648557503	0.855297724306124	0.966137398442399
Merged-chr3-27677207-3	chr3	27676693	27677693	+	718.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	33259.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	5.21266486481446	5.21977311195025	4.82842483783483	4.87489055337249	4.88114648630735	4.85553657407662	-0.517460300731826	0.180925314566364	0.56305619831836
Merged-chr3-103399980-2	chr3	103399535	103400535	+	611.375	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	120742.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	2.70970725231113	2.80959494709848	2.80201194218365	2.52049672534933	2.55776631950056	2.87434258151444	-0.649112971419331	0.399203687540317	0.775712434823128
Merged-chr9-52047290-3	chr9	52046761	52047761	+	587.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001104617)	promoter-TSS (NM_001104617)	111.0	NM_001104616	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	5.00684132472377	4.99918555820726	5.21541342954452	4.69960618515303	4.69234680695908	4.81080460399644	-0.764144723729886	0.0478167956782952	0.277094047150602
Merged-chr3-57736992-3	chr3	57736468	57737468	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	911.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	6.45868263221644	7.10266074773689	6.90318163240813	6.75380312252302	7.18241083934509	6.71909286730953	0.0941263911865021	0.761381382780134	0.941257991447882
Merged-chr11-116198918-6	chr11	116198443	116199443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	88.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	8.7074262465509	8.78886579843232	8.28825397890491	8.62639459859523	8.74523542571171	8.29158141310793	-0.0620044949463894	0.803795978686024	0.953557286986578
Merged-chr1-62720972-4	chr1	62720495	62721495	+	904.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	17678.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	5.94955349468283	6.30170259939944	6.2413810651026	5.56554393864272	5.82424547041115	6.20429642838836	-0.501187943453827	0.135042265718646	0.491193135369921
Merged-chr16-4886142-4	chr16	4885689	4886689	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357061)	promoter-TSS (NM_001357061)	89.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	7.737148055705	7.84532179225763	7.44087779428584	8.0452718773191	7.96231794245733	7.84939955420248	0.376239872638576	0.109233233535776	0.441646204861266
Merged-chr5-144769305-2	chr5	144768805	144769805	+	772.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081362, intron 1 of 70)	intron (NM_001081362, intron 1 of 70)	513.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	5.5056505790554	5.49572882746246	5.72333134206882	6.16057287994914	6.06425790894065	5.88689270255544	0.858447877605018	0.00564341007537347	0.0667202139175442
Merged-chr2-84826970-4	chr2	84826453	84827453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013899)	promoter-TSS (NM_013899)	-68.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	4.55889206682142	4.84532791842924	4.29971265849743	4.61545740363289	4.35573366874389	4.21991805099799	-0.460795471084823	0.330130196897013	0.721722325304293
Merged-chr9-89202361-4	chr9	89201894	89202894	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	3121.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	5.42107472225518	5.52469450517415	5.36163634959049	5.69264564589282	5.35896412545969	5.22692361481826	0.00880630077258555	0.980023708432106	0.995416130723271
Merged-chr15-99330861-2	chr15	99330361	99331361	+	799.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	27577.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	5.54610089842706	5.41767015064877	5.91860568195243	5.50949208187438	5.72819451484541	5.61277821319332	-0.0141403443570961	0.967159265331431	0.992479541792373
Merged-chr11-116100573-4	chr11	116100073	116101073	+	990.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9662.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	5.47340404719188	5.18573719846689	5.18325622131268	5.17702294502814	5.34904521438389	5.31268160901558	-0.0206628201847059	0.953674726276727	0.989446911725587
Merged-chr14-30125164-4	chr14	30124629	30125629	+	862.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	102496.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	5.39040685232754	5.60919737635475	5.15695999308213	4.74900464081615	4.8497860484624	4.58245136252817	-1.40677853553516	0.000406527399880197	0.00889932435917691
Merged-chr6-38712986-3	chr6	38712486	38713486	+	727.055542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 12 of 14)	ORR1D2|LTR|ERVL-MaLR	49917.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	7.32627577565369	6.90035473502178	6.66358526577162	6.97316257902808	7.46559785293723	7.18840349652555	0.341888685214977	0.255747372045117	0.652762828432113
Merged-chr1-165626554-3	chr1	165626045	165627045	+	686.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	7996.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.43917368918305	3.47377304119472	3.62199945872561	3.0651855300585	3.49441738447776	3.31685548011816	-0.759691749677765	0.238738939215798	0.635449458992732
Merged-chr2-68436371-4	chr2	68435842	68436842	+	875.1354369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	35639.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.98991729659141	4.7515731506147	4.7140585514318	5.04275753908948	4.71742697121911	4.52007789979163	-0.101032907966037	0.812090936719725	0.955468494621222
Merged-chr2-167587122-2	chr2	167586622	167587622	+	832.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44883.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	3.43662972046572	3.47898594035863	3.52951168738937	3.7203184787502	3.25735559268596	3.43459547358146	0.0109455373593915	0.985580503221179	0.99691465847822
Merged-chr7-135649252-2	chr7	135648752	135649752	+	872.6666869999999	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_015548, exon 3 of 3)	non-coding (NR_015548, exon 3 of 3)	-2647.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	3.94355279347622	4.165312412577	4.12222611492535	3.65131998303067	3.84277307562609	4.00616943840419	-0.741066690375545	0.153967154119061	0.523102321666687
Merged-chr15-50824142-3	chr15	50823644	50824644	+	646.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 3 of 5)	MTC|LTR|ERVL-MaLR	64905.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.35785821982635	3.27125119662961	3.46619775701028	3.15412192872898	3.22668534117953	3.48405360744169	-0.295178053559655	0.634624232426295	0.896354115104213
Merged-chr12-76536361-2	chr12	76535861	76536861	+	833.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	2801.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	5.46028890153578	5.34652678057088	5.67747852916638	5.44240861547493	5.78287891780242	5.92842515554726	0.442130497200981	0.199806927124436	0.588407790910296
Merged-chr14-50865147-4	chr14	50864663	50865663	+	998.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009351, intron 4 of 54)	intron (NM_009351, intron 4 of 54)	5391.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.0604508224683	5.26659548780653	5.27125681399443	5.25463853283222	5.30203738583983	5.42439721283706	0.250790978542781	0.473885216862187	0.821137882646165
Merged-chr11-78475464-4	chr11	78474965	78475965	+	988.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168521, intron 7 of 8)	ORR1F|LTR|ERVL-MaLR	9764.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	3.2468383628765	3.24455560149024	3.45656907213515	3.18871991837178	3.24373072437828	3.13606343792147	-0.494757587964631	0.431404053707501	0.796881045962937
Merged-chr5-123749971-2	chr5	123749471	123750471	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025438)	promoter-TSS (NM_025438)	245.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	3.14788600051555	3.24059379496424	3.54326277793183	3.88643562825842	3.57915775445508	3.56083036958815	1.38932197823829	0.0249629355115771	0.186874424221059
Merged-chr14-58271536-4	chr14	58271028	58272028	+	943.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	198842.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.26522739420686	3.03016492053664	3.32094921435914	3.47598092825836	3.23908578181296	3.33654140456806	0.589349067126393	0.352885500403161	0.740356213013919
Merged-chr4-130814014-2	chr4	130813514	130814514	+	770.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011520, intron 1 of 4)	C-rich|Low_complexity|Low_complexity	21477.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	4.09800176068167	4.0449650374136	4.52143161525336	4.39099954185572	4.01501700193953	4.38933629178444	0.11304445286089	0.822066373113209	0.958041123079214
Merged-chr5-24051273-1	chr5	24050773	24051773	+	626.0	f0_balb.idr	Intergenic	Intergenic	-20583.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.05486032375516	4.07051824399432	3.93805676787202	3.31316866248826	3.11100326555064	3.65421877570012	-2.47852251540638	0.000131546762772601	0.00357470380038621
Merged-chr6-17635664-4	chr6	17635182	17636182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1328.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	7.45980279489297	7.18065747654331	7.26186577106961	7.56769464003184	7.7335628224133	7.54512658776573	0.460966807289907	0.0509292669030673	0.287498130289717
Merged-chr6-114456708-3	chr6	114456231	114457231	+	816.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252643, intron 2 of 2)	intron (NM_001252643, intron 2 of 2)	-1791.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	5.11363649305043	4.92976902854912	5.17551816173161	5.30654318340361	5.23465838801646	5.47802758496272	0.542057807982103	0.131392812266441	0.484600165539392
Merged-chr1-183622774-2	chr1	183622274	183623274	+	705.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126203.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	5.28006606859234	4.8370753873559	4.99489507536265	6.07085758512909	6.32343577898793	5.52438877817026	1.82617460923161	3.1996843506826e-06	0.000149993991803717
Merged-chr13-119602410-2	chr13	119601910	119602910	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21409.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.70928935999378	4.00138305709738	4.56339028699909	4.18075502001583	3.75956018483833	4.59146605019024	-0.619806865537735	0.278844264430353	0.676248136249515
Merged-chr12-32245489-4	chr12	32244994	32245994	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-36845.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	2.97121614234111	3.17318599222659	2.89070053810069	2.92216783314483	2.81229150230635	3.02510482095459	-0.494224285061214	0.480229290078767	0.824537487093219
Merged-chr7-81571789-3	chr7	81571271	81572271	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001004185, exon 1 of 10)	exon (NM_001004185, exon 1 of 10)	479.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	7.8750461900007	8.14375049075586	7.82702266255723	7.87729181260296	7.83626660314484	7.96247910627751	-0.10096342772888	0.653733107082746	0.903525087604497
Merged-chr12-32640851-4	chr12	32640364	32641364	+	890.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-179471.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	3.39329812067398	3.39331893751138	3.20036471263612	3.37967595470998	2.86394705529759	2.95635750901857	-1.03210820640011	0.150884261429238	0.518064604481474
Merged-chr3-136898928-4	chr3	136898427	136899427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228861.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.64485100828568	4.55187860732845	4.53237198806172	4.90919549542505	4.6566968968571	4.9110053008675	0.570273958759972	0.163914057106809	0.537919970962073
Merged-chr4-151981536-4	chr4	151981040	151982040	+	941.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_172704, exon 16 of 16)	3' UTR (NM_172704, exon 16 of 16)	7446.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	2.21871782713389	2.184810529956	2.51839288264606	2.11991250979428	2.04562327912191	2.34688668019708	-0.97122273154141	0.289780112942346	1
Merged-chr17-67451110-3	chr17	67450589	67451589	+	840.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96598.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.28677865192332	5.36208057068477	5.51560749059033	5.90898956955403	5.85752442858275	5.74229137563366	0.855335798020197	0.00743084836239542	0.0816093134150627
Merged-chr1-131357911-4	chr1	131357417	131358417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-78354.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	6.47365277955349	5.84460774137519	6.05022211791489	6.07517936752434	5.9796847780553	6.11111510113092	-0.175121175343548	0.590453097781188	0.87721930044775
Merged-chr8-125649630-4	chr8	125649114	125650114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20204.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	3.45168765511789	3.49674644183431	3.40185335842721	3.35565859408899	3.11973878796769	3.05164524963775	-1.08758131123232	0.0898600280913853	0.398367649232111
Merged-chr13-111536607-4	chr13	111536107	111537107	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151444, intron 1 of 1)	intron (NR_151444, intron 1 of 1)	13302.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	4.52748533734417	4.27326076373808	4.02731144366204	4.31532444066878	4.15109123400217	4.55122492209538	0.105165200619712	0.830963850604691	0.960370002015736
Merged-chr12-12264318-4	chr12	12263803	12264803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	2164.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	7.38977361970883	7.52259215444044	7.18353683388358	7.48748394644964	7.58540875704501	7.27795003043092	0.122728591591053	0.617228328175872	0.888798538191505
Merged-chr2-59426548-2	chr2	59426048	59427048	+	694.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39866.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	4.70790980130916	4.51422334559317	4.59707757148453	4.11573412974965	4.25053401206197	4.32659210211847	-0.977227659623121	0.0281281871617473	0.200553120192686
Merged-chr11-87737420-4	chr11	87736940	87737940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-111.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	6.27184703112668	6.36750624820796	6.17565826541727	6.30610463757544	6.30055518655332	6.21480069251253	-0.00402423247506696	0.9883343528488	0.99736007315315
Merged-chr11-120444448-2	chr11	120443948	120444948	+	575.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_145363, exon 2 of 3)	exon (NM_145363, exon 2 of 3)	1817.0	NM_145363	208634.0	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	3.41708234807272	3.25212039933211	3.36583419133149	3.29345083297846	3.30311442130029	3.38141606778887	-0.0858400206683093	0.886620330796674	0.973794308941933
Merged-chr11-114679239-2	chr11	114678739	114679739	+	830.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_053273, intron 1 of 13)	PB1|SINE|Alu	3771.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	7.41601188502743	7.41829681589614	7.45042418006163	7.33841180583137	7.7629149703585	7.40164498356891	0.141639500300204	0.565045973447647	0.866552670637515
Merged-chr17-31069394-2	chr17	31068893	31069893	+	740.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	11699.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.70412773890113	4.6097125338898	5.32517123380817	4.82822599763475	4.73292644762909	4.89390554486898	-0.200378141381207	0.649764614958736	0.9023273707411
Merged-chr17-24470849-1	chr17	24470349	24471349	+	721.0	f0_c57.idr	exon (NM_025954, exon 1 of 2)	exon (NM_025954, exon 1 of 2)	376.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	6.56408155635566	6.61931004172841	6.36822305654056	6.49163448133007	5.9619823306813	6.37042956323006	-0.393537209819809	0.192046250045741	0.578998672915903
Merged-chr8-122941198-4	chr8	122940671	122941671	+	914.037476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081379, intron 2 of 12)	RMER19C|LTR|ERVK	92797.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	6.35311110534725	6.35902372660403	5.80131050019936	5.90745316305672	6.2040937161485	5.86416639686685	-0.336488198791112	0.308534932514223	0.704565421726157
Merged-chr5-102002848-2	chr5	102002349	102003349	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	67072.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	5.80155454344851	5.42026615382955	5.50832368839633	5.49806955170924	5.64397328373754	5.70800992988561	0.0482522374260314	0.885925032559636	0.973636976161493
Merged-chr2-30954065-2	chr2	30953565	30954565	+	621.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133673, intron 2 of 4)	intron (NM_133673, intron 2 of 4)	1064.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	2.92616609142452	2.7862184804103	2.74138842947456	3.03521303912937	3.01896752634534	3.17959673236279	1.21028401913929	0.087202694724678	0.391514561494144
Merged-chr8-70720107-4	chr8	70719617	70720617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	1574.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	7.2573364912469	7.31314575083516	7.15777476638884	6.87025811055751	7.3148847802321	6.8574041554341	-0.302969928725792	0.255752404755963	0.652762828432113
Merged-chr13-60694005-2	chr13	60693505	60694505	+	693.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	91794.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.51299896458207	2.93232883066326	3.65152625471568	3.27090944649267	3.0097367467712	3.13102770419914	-1.03519048184144	0.149978064840987	0.516609804764046
Merged-chr8-105700698-4	chr8	105700190	105701190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286345)	promoter-TSS (NM_001286345)	-458.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	6.82348601213798	6.87897885383352	6.69558381954844	6.74990193650164	6.96145844196959	6.30215309135986	-0.139434712963966	0.634475267777663	0.896350313439852
Merged-chr16-91842823-2	chr16	91842323	91843323	+	752.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	88807.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.60023823172538	4.75127992522427	4.80906220707499	5.01049968798888	5.06405986334111	5.05360253482058	0.723496824265251	0.0587533970697061	0.313683199446654
Merged-chr12-31947676-3	chr12	31947166	31948166	+	644.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177993, intron 1 of 8)	B3|SINE|B2	2579.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.18660697857746	3.04748117023033	3.21080421255899	3.23912028644139	3.35636747189565	3.2248752215841	0.550797788998714	0.382182630620352	0.763819347060188
Merged-chr1-171053562-4	chr1	171053050	171054050	+	958.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356511, intron 4 of 4)	intron (NM_001356511, intron 4 of 4)	5844.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	5.16112199124814	5.43875965498838	5.37187681026806	5.48270954283208	5.2531755146411	5.3114562247479	0.0449520269390195	0.897877412699772	0.976179002491449
Merged-chr11-75579687-2	chr11	75579182	75580182	+	854.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-8397.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	2.46480274247455	2.46733987435928	2.69220719944255	2.78133179189785	2.51386382942614	2.57742346715174	0.502576830202929	0.523752662941077	1
Merged-chr13-34710477-4	chr13	34709981	34710981	+	903.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR11A2|LTR|ERVK	-29161.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	3.94856310094054	4.08641241852616	3.9393219888204	3.81055086852293	3.93276877964486	3.63283674631985	-0.581350274080815	0.271894320334264	0.669283276820798
Merged-chr9-107566228-4	chr9	107565720	107566720	+	820.583313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019742)	TTS (NM_019742)	-2943.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	4.16617454629798	3.88104166050754	4.21802047824879	4.11443598006627	3.7952067843269	4.36815161527902	0.0316260377796704	0.952179624597832	0.989068549972429
Merged-chr10-57745631-4	chr10	57745149	57746149	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39274.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	7.53155922282404	7.48233404942307	7.42372114107422	7.07507274590062	7.51980478540269	7.2822639486196	-0.249331527832062	0.315322707707262	0.709692649130764
Merged-chr6-71831260-4	chr6	71830753	71831753	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253681)	promoter-TSS (NM_001253681)	-67.0	NM_001362134	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	8.08468267638083	8.23863759085001	8.09416884169776	7.9922614526351	8.1191679995476	7.98326426995198	-0.151314646400944	0.474142588793961	0.821276000840332
Merged-chr15-89240213-2	chr15	89239713	89240713	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026813, intron 1 of 24)	intron (NM_026813, intron 1 of 24)	28654.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	4.41150377847913	4.24266925633368	4.71178732576126	4.41976130847921	4.27297041255877	4.51141659917463	-0.153912079051347	0.737363492720194	0.933692850573981
Merged-chr1-89563641-4	chr1	89563139	89564139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108828.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	3.97793919306807	3.65477779063227	4.00911416556832	3.73765642120398	3.40026135310568	3.63158756443823	-0.983934476742821	0.0859093316212304	0.388196028555869
Merged-chr17-35261128-3	chr17	35260677	35261677	+	679.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	MERVK26-int|LTR|ERVK	-1917.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	3.75340862724926	3.30338442377857	3.50711246400461	3.49395706259282	3.33613179455322	3.29083512212263	-0.591995526582794	0.339233026819761	0.729122178214163
Merged-chr11-69679317-4	chr11	69678823	69679823	+	953.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030702, intron 2 of 10)	intron (NM_030702, intron 2 of 10)	2647.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	5.24555345547533	5.63496089101254	5.66426656337828	5.51336029396152	5.6075310678532	6.12501455013032	0.447039664606219	0.226576585913329	0.621533610412359
Merged-chr13-55430142-2	chr13	55429643	55430643	+	662.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-3339.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	6.45604816026888	6.44632239199056	6.68874062631242	6.96592091115898	7.34744682884466	6.89974156803993	0.884585542098663	0.00127988308027951	0.0218275284574497
Merged-chr11-5066578-2	chr11	5066078	5067078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1251.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	3.44758999882962	3.62307251205864	4.24788527470564	3.57424468700702	3.58771339840018	3.89449980589418	-0.395386068994203	0.525340974423968	0.848982097510195
Merged-chr12-76547768-2	chr12	76547268	76548268	+	913.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_046044, exon 1 of 3)	non-coding (NR_046044, exon 1 of 3)	157.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.26207823242366	3.09608627483275	3.14119777375285	3.05838772314116	3.24649723426789	3.37889720121127	0.261297202330758	0.685342611443918	0.916245399594352
Merged-chr16-32075119-1	chr16	32074619	32075619	+	540.0	f1_balb.idr	intron (NM_177326, intron 1 of 14)	B2_Mm2|SINE|B2	4223.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	2.59745078721695	2.52833145719887	2.83504297718071	2.83789832493143	2.80038621342385	2.90775590709382	1.04094717623273	0.166024117651514	0.541109862183596
Merged-chr7-98905990-1	chr7	98905490	98906490	+	767.0	f1_balb.idr	intron (NM_178635, intron 14 of 14)	intron (NM_178635, intron 14 of 14)	67145.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.70611506150114	3.52572516634161	3.40192054747329	3.36797046643203	3.11283113295648	3.1734285076781	-1.32449925088821	0.0366061675508135	0.235471973344122
Merged-chr4-135855160-3	chr4	135854609	135855609	+	894.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-962.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	6.09848730382022	6.46484790452363	6.66696357884875	6.35414667943332	6.43055550534497	6.3498772708742	-0.0681798871774208	0.818556318064113	0.95699419580147
Merged-chr14-20830252-2	chr14	20829758	20830758	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-6404.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	7.42049696634829	7.24902766238892	7.14019357985788	7.27007784046901	7.50705021089156	7.32908874950237	0.144139875470272	0.551087390270736	0.860978981386195
Merged-chr18-73808733-4	chr18	73808247	73809247	+	985.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	6645.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	4.44757455922085	4.79941826898967	4.73798326468134	4.8540158769622	4.79644867117521	4.94954113437824	0.445298056531155	0.276323598303753	0.673690550598639
Merged-chr6-128200722-4	chr6	128200217	128201217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-16914.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	6.3997792426507	6.54082144541801	6.25838452134285	5.43122339941829	5.49821988858891	5.405622337621	-1.6935709219678	3.63986864862125e-08	2.91778603578494e-06
Merged-chr15-5347941-4	chr15	5347447	5348447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103760.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	6.17084101430587	6.34128282250893	6.35262573710527	6.52634527572517	6.58228655685906	6.44990423195614	0.3869477808687	0.150472777863763	0.517334494681425
Merged-chr18-60376510-2	chr18	60376010	60377010	+	651.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_021792, intron 2 of 2)	RMER17A|LTR|ERVK	481.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	4.89711229463741	4.81886351214038	5.23693799689253	5.74797510756488	5.4533771832586	5.76624904243527	1.3460812346752	0.000249534910992274	0.00600095400978184
Merged-chr11-69040360-4	chr11	69039859	69040859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-5278.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	6.73855483797761	6.55535374103268	6.50829726940261	6.61998904795475	7.09759681887872	6.90347218257876	0.446305654740219	0.108212227666598	0.439398218728357
Merged-chr6-135198527-1	chr6	135198027	135199027	+	893.0	f1_balb.idr	intron (NM_001362111, intron 1 of 12)	intron (NM_001362111, intron 1 of 12)	427.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	4.33497388912149	4.54471103739814	4.61322244010982	4.51369310916163	4.13206510009724	4.5210708392295	-0.272112471355525	0.554024205313489	0.862575362378324
Merged-chr4-149700183-1	chr4	149699683	149700683	+	748.0	f1_c57bl6.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1446.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	5.0473892418358	4.85389102529863	4.91680650477545	5.67764397484948	5.8376261091037	5.80836364260842	1.64159269198476	2.12092778585827e-06	0.00010517172777455
Merged-chr7-90016669-4	chr7	90016172	90017172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12487.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	7.08919960760458	6.94913862319234	6.846715209072	6.66961761056518	6.87314965909989	6.46437658766607	-0.429230794529583	0.110569354703332	0.444285052450976
Merged-chr17-30010748-3	chr17	30010209	30011209	+	903.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151443, intron 1 of 4)	URR1B|DNA|hAT-Charlie	5670.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	5.16278617500037	4.81998886633067	4.96130332750823	5.24144429735487	4.85877426423355	5.0263977989757	0.124528473135479	0.752024788923821	0.938053911816822
Merged-chr3-60627780-4	chr3	60627274	60628274	+	998.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253710, exon 8 of 8)	3' UTR (NM_001253710, exon 8 of 8)	126595.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.35855662137499	4.00592285306439	4.01456156026696	4.31140087742688	4.33547126638727	4.23224804109989	0.417598889625944	0.385855940934464	0.766674506964127
Merged-chr4-62329527-4	chr4	62329030	62330030	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	31066.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.82226905048552	7.32853651411469	6.83357138898249	7.30492115487857	7.32008012801739	6.96715238393435	0.282363129020773	0.319857053330375	0.713759539088014
Merged-chr18-37924420-4	chr18	37923901	37924901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	11075.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	4.2465829963019	4.79935865964692	5.03119222195849	4.59830518341938	4.61683907406246	4.79148010287878	-0.135294044125379	0.772325155432887	0.943716660313239
Merged-chr7-107707883-3	chr7	107707368	107708368	+	930.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357438, intron 3 of 20)	intron (NM_001357438, intron 3 of 20)	16025.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	2.59049225358354	2.4531170542053	2.6662753151671	2.38442572681773	2.31739665666284	2.49220495833329	-1.09521633538895	0.181209737914265	1
Merged-chr14-103007950-4	chr14	103007435	103008435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045657, intron 2 of 2)	Lx10|LINE|L1	-25298.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	5.21031052851528	4.96117804587144	4.88667771105981	5.02592991693373	5.18264262714582	5.19956286935016	0.217130778920537	0.562194730679324	0.86560636450104
Merged-chr9-60837550-4	chr9	60837051	60838051	+	905.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	43109.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	5.87126977279783	5.58013418048854	5.18667159060663	4.74110849207651	4.88680542605246	5.0778913307657	-1.45572039280835	0.000272804238833515	0.00643592149273011
Merged-chr7-44453503-4	chr7	44452994	44453994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198250, intron 2 of 2)	intron (NM_198250, intron 2 of 2)	11007.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	3.42972652182552	3.28868959005237	3.46177970949532	3.45070744827759	3.22187638466508	3.4787466035061	-0.038970296276475	0.948556853220338	0.988151190239158
Merged-chr18-54987882-10	chr18	54987357	54988357	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175751, exon 2 of 10)	exon (NM_175751, exon 2 of 10)	2323.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.47716536305954	7.77314897841162	7.27314535486683	7.1453918071459	7.44847813749093	7.42013387838463	-0.273914077352751	0.293455831739779	0.690276375383417
Merged-chr6-134898387-4	chr6	134897894	134898894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-200.0	NM_001362051	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	7.80799413494276	8.04298670983556	7.7174670442412	8.03242632742519	8.29888346855656	7.99718166881222	0.359153950286294	0.125373107946588	0.473860802453766
Merged-chr15-67781053-4	chr15	67780537	67781537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	477819.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	5.68029550250108	5.72271385937593	5.6047406160859	5.7806914880257	5.71734805030402	6.23545302063406	0.440848905722023	0.185027344783637	0.569091204638575
Merged-chr3-79565231-6	chr3	79564764	79565764	+	861.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	2415.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	5.52887671801297	5.42252383403114	5.5572247204788	5.3500166901354	5.3721508116299	5.00169910466638	-0.460581201030835	0.192494471472111	0.579573020055413
Merged-chr5-21386572-4	chr5	21386084	21387084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	L1MB3|LINE|L1	13911.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	7.10312086402125	6.84155065411428	6.76142268478876	6.99008830759596	7.19332615685798	7.03847410731349	0.24997051611682	0.330299367094111	0.72184560952794
Merged-chr10-62553088-2	chr10	62552588	62553588	+	751.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	25369.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	5.0446157355099	5.33111837505659	5.06210234381163	5.14154010349822	4.75577951731555	4.69991081763052	-0.584805996416504	0.145205766155123	0.508278212537777
Merged-chr2-103962448-2	chr2	103961948	103962948	+	826.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	4453.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	2.77963866306747	2.70402046110347	2.65230673622231	2.88459356053213	2.62536399908203	2.91290390168446	0.489292734698831	0.511259915233011	0.841331921585713
Merged-chr2-30286400-4	chr2	30285893	30286893	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177648)	promoter-TSS (NM_177648)	-39.0	NM_177648	227697.0	Mm.26690	NM_177648	ENSMUSG00000075419	Dolk	BC026973|Tmem15|mKIAA1094	dolichol kinase	protein-coding	5.62459315113132	5.87558692452757	5.92086235993529	5.89966399996817	5.59863899639933	5.37793916265049	-0.289471633656575	0.396166231187543	0.773389948259227
Merged-chr4-133212596-4	chr4	133212080	133213080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-44.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	5.52569168340608	5.14782971672649	4.60658638990847	5.05936057686151	4.9517270673475	4.5318623193505	-0.597580004050541	0.208016389329006	0.598882796083733
Merged-chr4-66842360-4	chr4	66841849	66842849	+	904.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14798.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.64820354429185	5.51660764111697	5.49068556974114	5.04133320198844	5.23538864150581	5.14325247665405	-0.807910110058605	0.019214619353295	0.157316741823179
Merged-chr12-40446729-4	chr12	40446317	40447317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	764.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.96227199031111	7.35191001503342	7.18853520810527	7.07272192126981	7.2216590348068	7.29224148300046	0.0272253461151287	0.914342588573925	0.980912729144991
Merged-chr7-55956525-1	chr7	55956025	55957025	+	559.0	f1_balb.idr	intron (NM_023647, intron 1 of 6)	Lx7|LINE|L1	5968.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	5.32632934798568	5.01402029127823	5.26744437470564	5.38006069617728	5.56670873102775	5.33137770204862	0.459810524058932	0.195059612638257	0.582787221560878
Merged-chr8-70897505-4	chr8	70897013	70898013	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-70.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	7.11748570462149	7.56141000593965	7.27631308675304	7.16609925409565	7.49981897772908	7.57163487957883	0.129711522956117	0.625237197976263	0.89246806537449
Merged-chr4-45410338-4	chr4	45409799	45410799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1533.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	5.86519843805465	5.73152089951614	5.70735245785024	5.95944190609076	5.87591986938749	6.16406311158221	0.393961438722164	0.198486749884836	0.586786239054126
Merged-chr1-131974875-3	chr1	131974396	131975396	+	824.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	4287.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	7.94969310974215	7.99002506655601	7.87568003671929	8.1734974471193	8.31383069718816	7.9870658165754	0.325116211304159	0.138808824942432	0.497765344567168
Merged-chr15-83140680-2	chr15	83140180	83141180	+	693.1999509999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	8698.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	4.04681626569898	3.62667052994585	3.80530179318067	3.66065714779236	4.04816360553689	3.87541978244596	0.113191626473177	0.839003112253817	0.96266979462434
Merged-chr3-89773402-4	chr3	89772902	89773902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	-2.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	8.84090188477243	8.80508823656965	8.39451687015525	8.6912763815382	8.65123647406599	8.2390375289864	-0.21048188303839	0.395174387236898	0.772579826044138
Merged-chr5-115489025-4	chr5	115488551	115489551	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4567.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	8.66272689008188	8.89047141638703	8.00126455871589	8.65848705940767	9.01262195107043	8.23020837367342	0.139777883362376	0.656435002273554	0.904654860421566
Merged-chr16-10476102-4	chr16	10475575	10476575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3997.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	6.21160329489319	6.44584741087734	6.46483205129669	6.69700883102592	6.59197685196006	6.82686555217615	0.524729200832415	0.0527105744704609	0.293767011422512
Merged-chr18-89182222-2	chr18	89181722	89182722	+	594.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-15205.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	3.14585934012513	2.78156244993712	2.83614741308376	2.82405744510337	2.73195788433646	3.08833794755852	-0.235268067752364	0.750926714293008	0.937674068369247
Merged-chr5-72861861-3	chr5	72861345	72862345	+	911.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	6603.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	3.0847130458208	3.27999596782219	3.00766528687616	2.77290668354523	2.65465802414573	2.95984173967994	-1.72184988545797	0.0209481024305935	0.166480392267891
Merged-chr14-32192599-4	chr14	32192102	32193102	+	892.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016897, intron 4 of 6)	intron (NM_016897, intron 4 of 6)	9289.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	3.9356548479038	3.76406506765797	4.12362403805329	3.9322226040494	4.26274784870659	4.10001000881458	0.500291343668393	0.328386568675805	0.720562985671201
Merged-chr9-119248164-4	chr9	119247649	119248649	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-16457.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	4.73687455313986	4.86061272668739	5.33225702311132	4.7284434144782	4.90911137881169	4.89235957046852	-0.312980351169893	0.453803744619953	0.809979841654596
Merged-chr15-99370544-4	chr15	99370039	99371039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011711)	promoter-TSS (NM_011711)	-57.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	4.52598428264032	4.60326905820329	4.9272818062537	4.67304190139089	4.48786906744659	4.78219370705804	-0.0981658277556563	0.818628204911323	0.957000374759562
Merged-chr14-23825950-2	chr14	23825450	23826450	+	800.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	178255.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	3.39651451662628	3.30804390561948	3.49964770660735	3.26997804868177	3.05645994826534	3.30020567459005	-0.788519313953397	0.208593123860956	0.59957912982667
Merged-chr1-16618026-8	chr1	16617525	16618525	+	985.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271016, intron 1 of 6)	intron (NM_001271016, intron 1 of 6)	1313.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	6.4690151023422	7.02131451987462	6.56498638440161	6.73043132948282	6.97939856156947	6.96399726926945	0.278312018957724	0.339082069504184	0.72905273486574
Merged-chr13-9393644-3	chr13	9393144	9394144	+	847.666626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	117119.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	4.55030509680681	4.25837252876223	4.30329516227857	4.45420035546169	4.19322816858609	4.32610414711404	-0.145397213633026	0.751686403903066	0.937965033006408
Merged-chr13-24817087-2	chr13	24816587	24817587	+	896.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025790)	TTS (NM_025790)	14402.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	4.11882629229087	4.32574607826399	4.72678583909592	4.77535368457331	4.39849244768247	4.68132785358954	0.544129225645098	0.252521614898758	0.649921954382832
Merged-chr13-98955384-4	chr13	98954868	98955868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER45R|DNA|hAT-Tip100	-28984.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.2691666758618	5.98691639105525	6.01833902429692	6.61866678170102	6.64459715073968	6.45654341848102	0.786640824989433	0.00527799038686216	0.0635190951851355
Merged-chr12-3804139-4	chr12	3803644	3804644	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2836.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.04239869589434	3.91904300778796	4.15121360580548	4.4121194099978	4.15333584361094	4.47598926506353	0.86814565664173	0.0707900045027236	0.348868437257914
Merged-chr5-115235495-4	chr5	115235003	115236003	+	880.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026398)	promoter-TSS (NM_026398)	-348.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	5.09200277229628	5.01998916485104	5.0044002721212	4.60461553333193	4.3382220373355	4.7008830605535	-1.15265128510203	0.00466190075196163	0.0583494942492815
Merged-chr7-96539290-6	chr7	96538777	96539777	+	861.555542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310762, intron 4 of 32)	L3|LINE|CR1	-197313.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.80901171065726	3.73432726600642	4.18512737540024	3.5883758274517	3.31455617288622	3.85805513267607	-1.06290540454799	0.0773579821890575	0.366832107026107
Merged-chr2-124752010-4	chr2	124751495	124752495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98414.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.2887482542748	5.6772674410918	6.70178317172932	6.27724030101236	5.98680744777525	6.44975860671104	-0.0614751271159971	0.869814244905449	0.969901645415424
Merged-chr15-78303657-3	chr15	78303157	78304157	+	939.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	2064.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	5.75027846357623	5.51020221626685	5.42751734229267	5.32970898448564	5.12405200714801	4.84548544394251	-0.889170019892077	0.0170954186759925	0.145492032033547
Merged-chr8-26158132-4	chr8	26157616	26158616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199042)	promoter-TSS (NM_199042)	-53.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	7.65316260147573	7.8848512734528	7.81693290000813	7.65619854699699	7.511308582658	7.60188733482145	-0.288890320313293	0.197226086548832	0.585200877564998
Merged-chr2-153108511-4	chr2	153107995	153108995	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010407)	promoter-TSS (NM_010407)	27.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	6.79440836735893	6.95950891390638	7.26011479346906	6.87243087401261	6.88773261968582	7.07288268088989	-0.103433742376947	0.696923872878666	0.919769724884026
Merged-chr2-18835694-4	chr2	18835185	18836185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33867.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	3.42643235884808	3.29000897901564	3.14799895138026	3.2107448662428	3.32709083585438	3.28062513749204	-0.0935806358376906	0.8812116895158	0.972632712022374
Merged-chr19-61267115-2	chr19	61266615	61267615	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38697.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.08272558419433	5.03787533813946	4.95940469977878	4.74025992127405	4.66752662630668	4.49694579201279	-0.869189739902854	0.0282590794991614	0.201179114216822
Merged-chr10-44427621-3	chr10	44427123	44428123	+	827.583313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31125.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.27989511668943	4.41555920248593	4.26120325056562	4.47451279715046	4.88465640976831	4.23262821792158	0.630054347737982	0.188200506597492	0.573639611449654
Merged-chr10-68278685-2	chr10	68278185	68279185	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	41.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.58304571449658	6.64332177112589	6.79974836971803	7.0960562475696	7.17007677686974	6.78138083352088	0.56254804506323	0.0321683827140951	0.217840676958043
Merged-chr19-44416403-4	chr19	44415902	44416902	+	962.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	3.76054192709989	3.89817730597996	4.11047988272743	4.3374621156833	4.07030505014653	3.82815714294923	0.518866203116961	0.325975826640341	0.71841601332511
Merged-chr8-108780457-5	chr8	108780011	108781011	+	829.200012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	65867.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.26099292738846	5.42622781043562	5.15205850085208	4.20397474621613	3.67257330307405	3.90829409657643	-3.66345263885968	7.7552894649326e-12	1.27782599167943e-09
Merged-chr15-83440460-2	chr15	83439960	83440960	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	7420.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	3.1792612639895	3.2240310683823	3.14000597920852	2.99888894773264	2.92633483563904	3.26785584905435	-0.524290276422774	0.430750430975011	0.796567912992284
Merged-chr13-37581633-3	chr13	37581116	37582116	+	657.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	236271.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.2431677672743	6.42934180304953	6.20482268057896	7.19047160354609	7.29321539382797	6.92354373238106	1.33010770993569	8.00775272711711e-07	4.46587861205067e-05
Merged-chr16-91460247-2	chr16	91459747	91460747	+	713.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4857.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	5.84152975696177	5.88115773993716	5.35218216116269	5.49732353272053	5.46171983002613	5.54148415044526	-0.42762352347204	0.213956316427373	0.607081986287297
Merged-chr11-102316825-4	chr11	102316324	102317324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011551, intron 1 of 20)	CpG	463.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	6.57206059035199	6.18406140281601	6.42982403402379	6.67423585792902	6.39638088814255	6.4711103493305	0.184380137099813	0.51997549065456	0.846082496556008
Merged-chr10-59326820-4	chr10	59326326	59327326	+	811.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	3530.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.33465997363632	5.25041203788425	5.15427022751877	5.48855502533161	5.50629884792011	5.79043141604717	0.65692298762042	0.0560127967523033	0.304734525576647
Merged-chr5-151368120-2	chr5	151367620	151368620	+	858.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-555.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	6.289435386187	6.55598538658163	6.52968731834263	6.38078191419797	6.64959251083571	6.74849553540207	0.221261594514648	0.429458937527128	0.795778182246014
Merged-chr11-69411317-4	chr11	69410824	69411824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017426, intron 1 of 22)	CpG	2351.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	9.07213604350924	8.90510592962124	8.59667099791107	8.78191648785309	8.98525114157578	8.60977526525138	-0.0982606857189048	0.676535036335528	0.912525597578286
Merged-chr9-55283749-3	chr9	55283241	55284241	+	783.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032002)	promoter-TSS (NM_032002)	-116.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	3.48690547389263	3.73911232565641	3.90464695095952	3.47996199388926	3.3046577654863	3.63587674890831	-0.865626002622646	0.145581633465277	0.508750422332281
Merged-chr18-62093866-2	chr18	62093287	62094287	+	835.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	86194.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	4.83859947007187	4.50096969586963	4.92369661495192	4.70966356315808	4.74960506447231	5.23835799789938	0.337443591679689	0.438064085302837	0.800392257304524
Merged-chr2-112255333-4	chr2	112254828	112255828	+	935.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172521, intron 2 of 6)	intron (NM_172521, intron 2 of 6)	3963.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	2.72644676980087	2.52601432366015	2.88660598699555	2.54353590487161	2.53913645536862	2.46561764405463	-1.13363944717362	0.158241676964201	1
Merged-chr14-65071063-4	chr14	65070551	65071551	+	898.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	27055.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.84052534376572	3.74578327619651	3.77311656362505	3.9360215001797	3.81024024727213	4.12973436939998	0.528323965644603	0.309855285139411	0.705462734304293
Merged-chr5-114689445-4	chr5	114688972	114689972	+	913.05835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019821, intron 1 of 4)	RSINE1|SINE|B4	1463.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	6.37482702891855	6.5125388946806	6.57991016330587	6.69142949019986	6.64942097840131	6.34450336362257	0.147888460371724	0.589769339275893	0.876999741964957
Merged-chr1-95380700-1	chr1	95380200	95381200	+	647.0	f0_balb.idr	Intergenic	MTEa|LTR|ERVL-MaLR	67072.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.53414241131863	4.40339282430376	4.98703164001241	4.85428758724418	4.71649761999345	5.08233984053766	0.534169242899092	0.225044439835463	0.61994695414101
Merged-chr9-108997290-2	chr9	108996790	108997790	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	5388.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	3.06191415588242	3.20627648294375	3.40294508641552	3.56910436039427	3.33026058678357	3.30626434999678	0.731473320073542	0.24805001434193	0.645132606072547
Merged-chr9-104764117-3	chr9	104763598	104764598	+	956.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 2 of 15)	GA-rich|Low_complexity|Low_complexity	194615.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.04738733607351	2.88012410137632	2.93867550077381	3.07563778860828	2.74091898323411	3.01187300715315	-0.0520879809115335	0.941337883068774	0.986947626233663
Merged-chr4-53115457-3	chr4	53114974	53115974	+	810.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	44421.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.76477304259006	5.84576769897506	6.16685934156422	6.61751168772416	6.32905519911905	5.80183515825106	-0.0434579462540761	0.911916202646311	0.980211734893551
Merged-chr14-69776082-2	chr14	69775582	69776582	+	899.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_020275, exon 5 of 8)	exon (NM_020275, exon 5 of 8)	8610.0	NM_020275	21933.0	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	2.60479313542371	2.42809696648498	2.80769847900872	2.6104560845249	2.390142899775	2.64125487637525	-0.396957404231695	0.623508436376913	1
Merged-chr10-117808360-4	chr10	117807891	117808891	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15686.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	3.62384606753305	3.57483253930779	3.56160529652927	3.38041055605856	3.34013690583429	3.23081086252438	-1.01018970095802	0.0899605530253983	0.398691754787608
Merged-chr5-124538972-4	chr5	124538492	124539492	+	897.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRc|SINE|MIR	-1799.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	2.98297398886381	2.97253181515896	3.39945418794204	3.32820467473162	2.85479134488745	3.46975161745266	0.456915224898522	0.530194952449868	0.851070276054813
Merged-chr5-15463456-2	chr5	15462967	15463967	+	630.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	65755.0	NM_001310449	100861755.0	Mm.382859	NM_001310449	ENSMUSG00000106445	Gm21190	-	predicted gene, 21190	protein-coding	3.23869638357005	3.07749168081764	2.95382457542946	2.7193378943466	2.53509052259116	2.84079098758887	-2.20174667706056	0.00578343559039501	0.0679029361655973
Merged-chr3-16004517-3	chr3	16004014	16005014	+	741.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081687, intron 1 of 3)	RLTR23|LTR|ERV1	1818.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	5.25912081061861	5.60077206245326	5.44929390672202	5.17441647232836	5.42402663199891	5.01322447100627	-0.425097418341417	0.25097739326027	0.648349175361705
Merged-chr11-22970816-2	chr11	22970316	22971316	+	583.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144514, intron 1 of 2)	intron (NM_144514, intron 1 of 2)	-1189.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	2.74899432578064	2.64153242245504	2.74823352086988	2.76960493474035	2.53434234355575	2.88131957417789	0.0948248215678336	0.900056328093506	0.976728292075907
Merged-chr19-28677617-4	chr19	28677120	28678120	+	973.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-604.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	5.91738467615366	5.71204207634497	5.65295734703901	5.11817207851136	4.83673689658506	4.90001406546778	-1.61986484752342	5.58500174077428e-06	0.000243179918810228
Merged-chr8-82367000-4	chr8	82366527	82367527	+	856.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008357, intron 2 of 7)	L1_Mus3|LINE|L1	35559.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.26926514254333	4.05752617759277	4.54354233810246	4.16813467363226	4.06402975101829	4.24237791308892	-0.383649057544951	0.429517497871922	0.795784671795164
Merged-chr4-136885499-5	chr4	136884973	136885973	+	938.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	704.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	7.60949599107324	7.89259716365085	8.08992391911539	8.23671664244898	8.43345983524079	8.1661679085964	0.584482569068626	0.0148206060746732	0.131498506105929
Merged-chr4-109668260-1	chr4	109667760	109668760	+	841.0	f1_c57bl6.idr	Intergenic	Intergenic	-1504.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	3.36611968172584	3.39978109486692	3.47458088748444	3.64000033721789	3.65248181019016	3.75436860327095	0.976592874379475	0.084095775186817	0.383736839141468
Merged-chr16-45142793-4	chr16	45142309	45143309	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028756, intron 6 of 6)	intron (NM_028756, intron 6 of 6)	15864.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	4.86752351379572	4.84914440700462	4.64513271631137	4.07878619167761	3.96499923565194	4.18017894782134	-1.9308052494099	2.30632803508829e-05	0.000825752767399424
Merged-chr2-75731296-4	chr2	75730809	75731809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26646.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	7.53802262728607	7.37806532213757	7.17030131612541	7.38819756094862	7.54495428165978	7.20267731670675	0.0241254334693376	0.923381823384257	0.982699256056545
Merged-chr14-51132596-1	chr14	51132096	51133096	+	709.799988	f0_c57.idr	TTS (NM_001360117)	TTS (NM_001360117)	3532.0	NR_153407	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	2.40326744947341	2.38307329330769	2.48580893235008	2.74526668637315	3.01630809648859	2.80999789863968	3.11787323111526	0.000617017211033348	0.0123832050399573
Merged-chr9-118726207-1	chr9	118725707	118726707	+	732.0	f1_balb.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	14515.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.69083283722474	3.96283572354898	4.1701347686029	3.81270719308375	3.60428928854805	4.15224814486079	-0.25426002650902	0.652980260676912	0.903046151766902
Merged-chr19-42019043-4	chr19	42018553	42019553	+	959.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	RLTR34B_MM|LTR|ERVK	-16985.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	6.77479696769251	6.90813202818968	6.70866904945649	6.15293163920854	6.18868040459519	6.24500363990229	-0.986589565584025	0.000192922939838839	0.0048629906022751
Merged-chr4-147434130-2	chr4	147433630	147434630	+	983.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	RMER17C|LTR|ERVK	-119147.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.45519177521691	3.49823697083875	3.6042021121351	3.18520208108128	3.41823188948382	3.86298108251856	-0.019037890990689	0.976075054939231	0.994572735300192
Merged-chr14-19729309-2	chr14	19728809	19729809	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21948.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	3.22031443200287	3.19175331409068	3.32739499567694	3.11617996494252	3.04708204457989	3.39765606392108	-0.24042304028003	0.708576587917885	0.92375127577894
Merged-chr17-70846411-4	chr17	70845905	70846905	+	943.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164077, exon 1 of 2)	5' UTR (NM_001164077, exon 1 of 2)	372.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	4.15806938308969	4.38376507838191	4.4275318387586	4.3354832454241	4.24045348989555	4.4937703523049	0.074695288947624	0.86994179564546	0.96995859587526
Merged-chr5-43886276-2	chr5	43885776	43886776	+	725.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007646, intron 1 of 7)	B4A|SINE|B4	17467.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	5.20931240176783	4.87308074150738	5.12122274997458	4.83031677484796	4.74946105351146	5.18469937152133	-0.326341699139521	0.414476800127623	0.785828006486374
Merged-chr19-11485466-4	chr19	11484975	11485975	+	973.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6563.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	4.82790352684864	5.24524464751683	5.12096290735729	4.82716872043973	4.70763041274832	4.9102387159959	-0.583188825069207	0.141035589924924	0.501775771225985
Merged-chr19-40895230-3	chr19	40894757	40895757	+	983.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_106167)	TTS (NR_106167)	552.0	NM_028319	72672.0	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	6.92155883593737	7.20870638408254	7.64763236216325	7.55801187758324	7.3586722259731	7.33571497674734	0.199755945654558	0.480319811465018	0.824543506620807
Merged-chr7-101912086-3	chr7	101911582	101912582	+	880.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027053)	TTS (NM_027053)	-5723.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	3.6143995796183	3.49829391226179	3.57759283309585	3.40173214400732	3.44435658105223	3.69829964961391	-0.179560408938704	0.754865597937306	0.939123558849015
Merged-chr4-132945617-6	chr4	132945090	132946090	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23039.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	7.97091135964263	7.77009411748419	7.48068090605113	7.73150927534285	7.89222737291731	7.58900349468455	-0.0210014814906071	0.932846663031773	0.98531684549485
Merged-chr12-12291396-2	chr12	12290896	12291896	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	MLT1A0|LTR|ERVL-MaLR	29257.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	4.32079054720508	4.43363776070354	4.7999758126892	4.74989261744294	4.68304116083141	4.75561994209409	0.49829634461986	0.248187560450041	0.645329537512171
Merged-chr9-37236848-1	chr9	37236348	37237348	+	673.0	f0_balb.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	18890.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	4.76406445225876	4.76098503951425	5.05908724816634	4.13604565377242	3.70031208359801	4.4060628767301	-2.00284212725247	0.000110302617016246	0.00308091982433293
Merged-chr5-66080707-2	chr5	66080207	66081207	+	924.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17472.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.10858284157123	5.17920857491398	4.91751480404851	5.00664880546552	5.04334295142452	5.54260205383505	0.26573361173235	0.500408053373992	0.834978949366358
Merged-chr15-74930520-4	chr15	74930015	74931015	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24536.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.09867675582524	6.39114850862547	6.44296875583614	6.95110193495315	7.19740444667177	6.66221101264731	1.03036723657053	0.000391190159323562	0.00864110081443132
Merged-chr2-17932051-4	chr2	17931554	17932554	+	986.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64904.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	2.94048814161596	2.77431115234214	2.69595419953887	2.75263920362925	2.69319702886326	3.01252987850089	0.0518752297792379	0.944246887168976	0.98760473870349
Merged-chr14-66278423-3	chr14	66277918	66278918	+	728.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	2634.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.8254177361287	4.86580674673418	4.65934212339396	4.86934287122662	4.79450471791987	4.99114554146814	0.194290915651954	0.620357934534632	0.890068302891401
Merged-chr16-35983278-4	chr16	35982758	35983758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-105.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	8.32635129222568	8.38359107340184	7.95501297085564	8.35095473385496	8.11922511487699	7.91398779254039	-0.136322524042537	0.58035561968177	0.872806789923022
Merged-chr18-34759442-6	chr18	34758892	34759892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357456)	promoter-TSS (NM_001357456)	65.0	NM_001357457	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	7.92487862748701	7.96036989761196	7.7110545756445	8.20536185826413	8.19985183951295	7.77654247226737	0.29552557852108	0.219211796091099	0.613259426727236
Merged-chr3-60472160-4	chr3	60471655	60472655	+	853.3916630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-675.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	5.84465847180331	6.14967200599236	5.92635918795989	5.93572981633241	6.39469239027554	6.1895590569554	0.357550696313752	0.255060739767935	0.652046992991896
Merged-chr11-50227864-2	chr11	50227364	50228364	+	980.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	2529.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	4.63818446973893	4.78417257447883	5.13679307107506	4.98378542656395	4.93531420051981	5.00450874238369	0.256690047653326	0.521285120959202	0.846938187698154
Merged-chr17-31075643-4	chr17	31075138	31076138	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17944.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	8.72531381890293	8.67734190948978	8.16794911161295	8.53869930070117	8.89796710293392	8.17348713075891	0.0355925500310188	0.899386203463619	0.97662115673637
Merged-chr2-179976840-4	chr2	179976335	179977335	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033782)	promoter-TSS (NR_033782)	-18.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	6.90369234674303	7.00982653293335	7.47353517771332	7.28904606075112	7.13553183313312	7.31709741217256	0.153991396245802	0.570482205324801	0.869214688261816
Merged-chr10-95501933-4	chr10	95501393	95502393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	56.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	6.63706314530869	6.92658976487729	6.38255648221351	6.67722598352116	6.73153470301054	6.34021652955398	-0.118875605214607	0.689863826047164	0.917495512399022
Merged-chr2-59401195-4	chr2	59400674	59401674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14492.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.45696748104663	6.45219142899891	6.782571807342	6.47134145410266	6.69948909159944	6.59206346926608	0.0502045116651181	0.855089799734362	0.966059905720255
Merged-chr11-8689730-4	chr11	8689247	8690247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25212.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.58545704148976	7.93993182268517	7.55354309952337	7.76696991647181	8.25235180940352	7.72509530146043	0.337967906841958	0.20866662968793	0.59965921681354
Merged-chr11-83058936-4	chr11	83058424	83059424	+	960.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-6188.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	5.81769864792916	5.44489471259061	5.94026446983048	6.12729271457636	6.13240639101773	5.93094992459123	0.58360160641918	0.0704074902676818	0.347713868635099
Merged-chr12-4160555-4	chr12	4160063	4161063	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	26410.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	6.14392763262833	6.2886636985073	6.10596043224711	5.58970487431752	5.49885400145311	5.68558503339286	-1.06847676550621	0.000403935429867125	0.00884956799588829
Merged-chr2-120036410-4	chr2	120035929	120036929	+	882.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_104353, exon 15 of 27)	non-coding (NR_104353, exon 15 of 27)	2996.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	2.8637371676653	2.78904147806229	2.84285485765503	3.08071197429054	2.89643326039471	2.97787692282807	0.750229707356029	0.279250178560517	0.67682285501122
Merged-chr18-82470206-4	chr18	82469707	82470707	+	868.4249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4916.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	3.23781518251009	3.12639803505179	3.17229612197557	2.880040636039	3.01008093594648	3.12933943911003	-0.77458245207533	0.245102200057	0.642381314494918
Merged-chr19-40662172-4	chr19	40661725	40662725	+	816.428589	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	2455.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.41589063074935	7.34718762449828	7.0964056886374	7.34661840032329	7.46193593268186	7.3928757344692	0.149723897509102	0.529243042650171	0.850847288056475
Merged-chr1-192138662-3	chr1	192138168	192139168	+	876.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-628.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	5.64203855138505	5.89994807946459	5.7345588922658	5.44957752076533	5.44212572421062	5.55401508618101	-0.536580752386796	0.0957716066499552	0.412621749398306
Merged-chr5-110448005-4	chr5	110447477	110448477	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001142642, exon 1 of 19)	exon (NM_001142642, exon 1 of 19)	526.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	6.86212801112672	6.50959058395621	6.57511150734355	6.84778190892529	6.48218714666714	6.80975685317746	0.0868537336724026	0.758762976360138	0.940287421764314
Merged-chr10-61383604-5	chr10	61383102	61384102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013753)	promoter-TSS (NM_013753)	-79.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	5.39619960512493	5.20574944474725	5.19130553108308	5.13852706618239	5.21218662247655	5.62956149818225	0.122870682645469	0.739698306756432	0.934245371298156
Merged-chr5-31727628-4	chr5	31727105	31728105	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	29555.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	5.89829665740419	5.8836223314967	5.87839927012577	5.56085152003635	6.02979745558538	5.65321339448834	-0.191563343864151	0.558108415771238	0.864497655525023
Merged-chr17-35021977-2	chr17	35021477	35022477	+	678.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138582, intron 9 of 16)	RLTR18B|LTR|ERVK	5398.0	NM_001347347	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	3.14338026884251	3.20456047268444	3.59269334251169	3.91192051301535	3.57629529906587	3.50145662006883	1.32296064347841	0.0374677597324117	0.239209495266977
Merged-chr2-33755839-4	chr2	33755361	33756361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49955.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	5.13328638032191	5.1832237803617	4.59520662174163	4.66855835428486	4.75079422414345	4.478177272726	-0.81475452205526	0.0618424490493852	0.322842493286984
Merged-chr3-152396525-4	chr3	152396014	152397014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-170.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	8.43416158232978	8.0460187813709	7.86605239422872	8.33137832796666	7.86034083460863	7.88059179470025	-0.138555772273536	0.608389533799933	0.88499088740025
Merged-chr2-32009011-3	chr2	32008513	32009513	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172268, intron 18 of 35)	intron (NM_172268, intron 18 of 35)	34563.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	4.5472819300256	4.21708390160734	4.4869129018039	4.6722931103495	4.52955747544651	4.51176649707476	0.379132908907185	0.387670144650025	0.767720407550912
Merged-chr6-82769917-4	chr6	82769413	82770413	+	934.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	4541.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.4097710887041	4.25880572371799	4.47710102925599	4.8611894321504	4.85990898383542	4.82405534956331	1.1396498991977	0.00590061841011168	0.0689434135651857
Merged-chr15-90109613-4	chr15	90109124	90110124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-114687.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	3.83217265473956	4.06147114352017	3.70843179606593	3.33693245419484	3.41044080783527	3.92722011315321	-1.01038315097721	0.100075397984774	0.421923070303867
Merged-chr3-51195470-4	chr3	51194968	51195968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.07325916904059	6.23728761684939	5.78479131974526	5.93066173453789	5.86374248679759	6.04283562438323	-0.200782779888434	0.516705777860369	0.844296391152365
Merged-chr14-26580262-3	chr14	26579761	26580761	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145969, intron 1 of 17)	intron (NM_145969, intron 1 of 17)	711.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	7.51015853939548	7.83362404960276	7.47846238449861	7.52699416264738	7.70634909685089	7.59520284008297	-0.0139483789331493	0.953567408242466	0.989446911725587
Merged-chr18-75695920-2	chr18	75695420	75696420	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	1776.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	3.57710586207549	3.61378519081783	3.43258940613227	3.39766964274264	3.36384997076555	3.14016634632902	-0.898156580624969	0.147284284708517	0.51213793055522
Merged-chr10-88054761-6	chr10	88054306	88055306	+	848.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36266.0	NM_029971	110312.0	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	3.43206982739838	3.4372462449702	3.29883996776324	3.15371251461976	3.29318250145684	3.31320005248323	-0.556625820324449	0.36423889681032	0.749666877743191
Merged-chr6-137704453-3	chr6	137703948	137704948	+	955.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30634.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	3.54235625771316	3.38132906199128	3.25458166779311	3.21139171407215	3.26082472463872	3.38423324588744	-0.471046326258609	0.444847052542945	0.804512889825759
Merged-chr14-66868746-4	chr14	66868253	66869253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009955)	promoter-TSS (NM_009955)	-97.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	5.34836445409423	5.51505887443541	5.83832658618863	5.6654183799473	5.56556382816944	6.16873020721462	0.444224143310029	0.225667997906502	0.620676402041606
Merged-chr10-128083812-1	chr10	128083312	128084312	+	543.0	f0_balb.idr	intron (NM_016774, intron 1 of 9)	CpG	505.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	7.01781889147849	7.234917403261	7.07201322872034	6.92647010235629	7.0873462994793	6.81883923910933	-0.238002619877794	0.342017779846244	0.731142095278512
Merged-chr1-165668002-2	chr1	165667502	165668502	+	656.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33461.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	6.37032286395846	6.84040034054316	6.69417954109115	6.51139928715565	6.85468488369014	6.6397303675315	0.0505606964482579	0.861423654756947	0.967819025542415
Merged-chr8-11459230-4	chr8	11458725	11459725	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-18704.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.38235198330941	8.50129239412005	8.35724255710498	8.52478551478698	8.7459729447783	8.23607111241915	0.152802853785098	0.508435780660894	0.839818423824339
Merged-chr3-9881090-4	chr3	9880623	9881623	+	943.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-47444.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.49469813929374	4.50920835921454	4.59171434536046	4.98811466221429	4.91874112167812	4.85599625078201	0.921548199017515	0.0203374826326632	0.163278495546497
Merged-chr8-120818231-4	chr8	120817708	120818708	+	964.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79569.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.25091196462107	5.34993928727184	5.24562527373659	4.62663541370146	4.73541162143033	4.78269827335577	-1.23811676363014	0.000999276959540515	0.0180085364322515
Merged-chr18-54985857-4	chr18	54985378	54986378	+	975.341675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	4302.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.37642751794541	6.24048078311022	5.83310216500351	5.58899476102975	5.78981039716127	5.73504053100813	-0.826001887057334	0.0105903708622472	0.104631153966501
Merged-chr10-80116612-2	chr10	80116112	80117112	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_126043, exon 1 of 11)	non-coding (NR_126043, exon 1 of 11)	809.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	6.12026888032458	6.05976333664781	5.89143771976551	6.26260926263093	5.97884592609599	6.32189134029834	0.259886093074657	0.386531459243814	0.767131316757601
Merged-chr16-36640665-2	chr16	36640165	36641165	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	25412.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	7.19572583919991	7.38065866268564	7.16487538340715	6.95362280759805	7.27482556555943	7.12243712549907	-0.18891866556741	0.447357833621427	0.806404141026781
Merged-chr12-59136309-1	chr12	59135809	59136809	+	548.0	f1_balb.idr	intron (NM_001165253, intron 2 of 22)	B3|SINE|B2	4856.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	2.46426913139015	2.42944947050339	2.65436855536873	2.61984614013306	2.38871755733251	2.66687529284185	0.259754570043995	0.745192261796821	1
Merged-chr16-21310974-4	chr16	21310509	21311509	+	997.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14137.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	5.8827695269131	6.02204400472962	6.08957801517503	5.84004315891522	5.90015775422162	5.37636021052024	-0.452197354500996	0.174107981301797	0.553317761609134
Merged-chr3-142530857-3	chr3	142530359	142531359	+	753.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083312, intron 1 of 10)	intron (NM_001083312, intron 1 of 10)	523.0	NM_145545	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	6.42353627329305	6.39712485814628	6.42471645250121	6.43174816471456	6.56691192690142	6.40949996020989	0.10170306367128	0.700788757630268	0.921002460903367
Merged-chr15-31460781-4	chr15	31460298	31461298	+	954.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-7109.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.04399394339129	3.26504954018906	3.27027599313156	3.30435385871582	2.94360703137742	3.04907667022978	-0.380548467173084	0.572073926943868	0.869792375119144
Merged-chr11-5009888-4	chr11	5009388	5010388	+	782.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	23064.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	5.52697130004332	5.76983958509596	5.65710378654497	5.19864170737953	5.06062952599438	5.28811498962396	-0.938309302764756	0.00601401104728355	0.0699080749657713
Merged-chr17-83272782-4	chr17	83272312	83273312	+	900.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	57529.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	3.86583589295946	3.79187243513331	3.72052748449742	3.81864826967973	3.61817507636806	3.9886404373787	0.0335007721882519	0.950365691255581	0.988425934178221
Merged-chr8-105533504-1	chr8	105533004	105534004	+	613.0	f0_balb.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	14758.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	3.18973507741531	3.34878059369843	3.60622320043877	3.10113671977452	3.10201368446645	3.20212434146912	-1.04685744268025	0.106316038233648	0.435306279684142
Merged-chr19-47406346-2	chr19	47405846	47406846	+	723.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	58065.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	5.674731482103	5.45561568447523	5.24383114632527	5.46085520316523	5.61003364435453	5.66877210341411	0.188378109710319	0.582942340210262	0.873850408743513
Merged-chr2-18983559-3	chr2	18983086	18984086	+	849.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	MTD|LTR|ERVL-MaLR	14535.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.49299614773627	3.67859715382067	3.4550456649058	3.71132660263017	3.41433971601316	3.84016325635523	0.379964676714114	0.518310863139412	0.845156513047069
Merged-chr1-9806093-4	chr1	9805597	9806597	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	7967.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.55091712001474	4.68381557973936	4.73403780685134	4.5157938982843	4.72708614091461	4.60299714770196	-0.074095257416237	0.857995432970016	0.966785186918462
Merged-chr4-46552911-2	chr4	46552419	46553419	+	701.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	13521.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.39283048402193	3.57112681836115	3.63055768925059	3.35903069757744	3.59079253238881	3.69972760406729	0.0821867846517949	0.888082469433989	0.97401529899353
Merged-chr5-38562388-2	chr5	38561888	38562888	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-793.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	6.68396364854918	7.09835892059689	7.26355627062408	7.00315248650609	7.14253782684507	7.25442716475117	0.156357717277778	0.570211610893189	0.869072933274727
Merged-chr15-10486008-4	chr15	10485527	10486527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	9.0	NM_011232	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	7.82682281737417	8.11992807097698	7.60277900622132	7.78491110653745	7.80424105857998	7.33369219041046	-0.297775005809847	0.266527081483791	0.664166899200562
Merged-chr19-61230592-4	chr19	61229983	61230983	+	806.392822	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur1|LINE|L1	-2065.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	3.49870829079169	3.58564412504898	3.93167548535546	3.78285916202512	3.64676454946803	4.04382810590535	0.493829985357647	0.38624296628611	0.767010446975839
Merged-chr19-4930762-2	chr19	4930233	4931233	+	704.25	f0_balb.idr|f0_c57.idr	3' UTR (NM_001347422, exon 6 of 6)	3' UTR (NM_001347422, exon 6 of 6)	-2446.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	3.2865952178108	3.42831911922444	3.44967633976674	3.18621430173152	3.18993141735731	3.30178797785333	-0.667559912755142	0.276618460987891	0.674003097641857
Merged-chr4-95052300-4	chr4	95051815	95052815	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010591)	promoter-TSS (NM_010591)	-93.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.41545452115977	8.3225368276048	8.13655822836603	8.23569701001723	8.39131798954466	8.2388200420744	-0.0107105632102003	0.960164267166807	0.990335445597503
Merged-chr11-120712940-2	chr11	120712440	120713440	+	945.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347612, intron 1 of 5)	intron (NM_001347612, intron 1 of 5)	827.0	NM_016665	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	3.24232459472669	3.2431440478886	3.32757887826495	3.44642334153084	3.17561229014568	3.28564904023386	0.145131923416878	0.814327241873776	0.956208769394114
Merged-chr4-24496369-4	chr4	24495868	24496868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199467)	promoter-TSS (NM_199467)	-83.0	NR_149739	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	5.65875657721326	5.68485795256784	5.85653831311106	5.62450698901767	5.43838817880313	5.5304634809397	-0.373381806723757	0.244367484776638	0.641652613629162
Merged-chr5-121721072-2	chr5	121720572	121721572	+	811.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009125, intron 1 of 24)	B3A|SINE|B2	9463.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	6.55300819084832	6.45315804489379	6.55544646631168	6.81965838527848	7.03906779044347	6.63210940411312	0.524524505416522	0.0501963320122399	0.285159854855906
Merged-chr8-72218869-3	chr8	72218311	72219311	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-919.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	4.12840153641623	4.23613570371368	3.88403678602228	3.67793396698984	3.45135618908054	3.50558085221643	-1.83789484552905	0.00111288974207813	0.0195567750071461
Merged-chr12-69503833-4	chr12	69503325	69504325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28275.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.69671444278244	4.64479114480833	4.49783199279335	4.58104791673494	4.21128561211602	4.43448942221864	-0.521294068282751	0.237324653165166	0.633725545735683
Merged-chr3-88504542-4	chr3	88504052	88505052	+	968.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1200.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	4.1442643540834	3.71206914189802	3.97801255659726	3.91845869935079	3.29116610306465	3.45478047648583	-1.21398002448498	0.0545400126079887	0.299925012827013
Merged-chr11-103964225-4	chr11	103963729	103964729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2496.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.6185815082628	5.96536920136313	6.15603331695312	6.01498120607808	5.86334288851833	6.7597645970664	-0.0187194133805136	0.961180834844243	0.990463353961952
Merged-chr5-121390590-2	chr5	121390090	121391090	+	819.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4975.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	4.48820372487393	4.46731069149373	4.87360859078149	4.89976447971632	4.94863767162629	5.13601104033895	0.878266212011087	0.0330543499998977	0.221680209139315
Merged-chr3-53459673-4	chr3	53459177	53460177	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	3581.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	7.41638037894047	7.59806941975595	7.35898880741909	7.58302141546899	7.61526714681381	7.47007572605673	0.137935627854262	0.547611144145381	0.859389836719927
Merged-chr9-58554863-5	chr9	58554374	58555374	+	792.164307	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-13934.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.13574792664256	4.12765565586411	3.67859598537076	3.41200642944758	3.53394203937153	3.57998780788408	-1.6758809514713	0.00391679143552276	0.0511309039483806
Merged-chr4-151995782-2	chr4	151995282	151996282	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172705, intron 1 of 3)	CpG	397.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	6.58556660376207	6.51326524924868	6.79868613092375	6.70463045240603	6.22880850181007	6.22880646100479	-0.357011919937775	0.2306204676848	0.626381219532661
Merged-chr15-81905204-4	chr15	81904712	81905712	+	963.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080633, intron 7 of 17)	Tigger20a|DNA|TcMar-Tigger	21001.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	3.14973448457834	3.06665628842015	3.16528026542525	3.01415114587553	2.9251132460733	3.18024433723473	-0.401355849235255	0.543456738997389	0.857551302506722
Merged-chr2-38925773-2	chr2	38925273	38926273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010264, intron 1 of 10)	CpG	688.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	3.37909254270399	3.34539657682168	3.38250818091441	3.34983629112858	3.40227199727275	3.28239133098601	-0.0729300901113804	0.902696324667656	0.977585531827525
Merged-chr1-16227888-3	chr1	16227347	16228347	+	942.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025303)	TTS (NM_025303)	121965.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	6.86349510768557	7.0185045936137	7.21682792302043	6.91366757544535	7.05942070979462	7.32891051636515	0.108529164826239	0.681474991036053	0.914693263933768
Merged-chr18-12734717-4	chr18	12734190	12735190	+	894.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028341, intron 11 of 13)	intron (NM_028341, intron 11 of 13)	-6665.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	4.31635222867496	4.27891386658619	4.51239251423985	4.56861800052804	4.52309866361609	5.00503261773698	0.83649595999945	0.062895828599815	0.326233393974156
Merged-chr8-84977721-6	chr8	84977211	84978211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	1037.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	8.54747247502569	8.69871501676025	8.28371126459635	8.25590284108988	8.50378202337938	8.18182140517078	-0.27981508870079	0.230532986023402	0.626341302534829
Merged-chr10-79985067-4	chr10	79984554	79985554	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-794.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	8.08346658123274	8.36168193099995	7.82213548671021	8.27286992213767	8.6122526632842	8.03342785823845	0.30980912937554	0.246997788626407	0.644045601901006
Merged-chr4-63545880-4	chr4	63545355	63546355	+	933.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024173, intron 1 of 2)	intron (NM_024173, intron 1 of 2)	1090.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	6.56791033297563	6.84450220062353	6.41034898319314	6.81383147032454	6.78652996508705	6.39050364745993	0.0909615624136919	0.754979560481904	0.939180610396804
Merged-chr11-86257591-4	chr11	86257114	86258114	+	990.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027421)	promoter-TSS (NM_027421)	-46.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	5.72763227233598	6.18945511731034	6.21073683379945	6.06086726401757	6.04001497578904	5.70756058374437	-0.177404139644762	0.590745964054184	0.877301111216348
Merged-chr19-10577344-4	chr19	10576775	10577775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302218)	promoter-TSS (NM_001302218)	111.0	NM_028411	72982.0	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	6.41181621582464	6.46958630624	6.34690235423685	6.21175301461434	6.53329198695993	6.3680593157324	-0.0480633180567773	0.862472140864116	0.96807605498315
Merged-chr1-162572249-1	chr1	162571749	162572749	+	671.0	f1_balb.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	1421.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	7.63617075226609	7.75375853279033	7.55098324615819	7.37587789736338	7.70895394742659	7.33065062059277	-0.233012942179284	0.339309322334116	0.729164516858914
Merged-chr8-120720069-4	chr8	120719566	120720566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16292.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.33232412959375	7.07501160625876	6.89359299535283	7.04048560192057	7.15183251299687	6.60412134085995	-0.233950478805942	0.413783206318217	0.785367083470648
Merged-chr4-138262305-4	chr4	138261780	138262780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190978)	promoter-TSS (NM_001190978)	29.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	4.25831280247745	3.97738032714871	3.98341692172208	4.06771901532797	3.88495192959009	3.95222523463858	-0.341658927962298	0.496236000418279	0.83293489768267
Merged-chr17-46325441-2	chr17	46324941	46325941	+	870.333374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145140, exon 1 of 20)	5' UTR (NM_145140, exon 1 of 20)	325.0	NM_145140	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	4.68846089185213	4.77190586432693	4.81888479804135	4.49780053157056	4.51224302578846	4.98599727198305	-0.202538797312529	0.635791410771921	0.896797678725484
Merged-chr18-36513639-2	chr18	36513134	36514134	+	954.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2171.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.38919829203223	6.07491999727704	5.94886580135826	6.34865429305741	6.32562497688267	6.29965340477274	0.273528476148964	0.353503532617914	0.740736914917923
Merged-chr10-80695373-4	chr10	80694871	80695871	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	6449.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	7.58956142865766	7.325744191067	7.19529163556243	7.55655011126689	7.93233209330869	7.48282283133719	0.429046198812047	0.102094778144577	0.426069687497354
Merged-chr8-75151487-2	chr8	75150987	75151987	+	981.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41978.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	6.06847230730669	6.21198200143682	6.50645775621805	6.75985872396976	6.71765735025053	6.80194424549577	0.79884988547791	0.00393411788741312	0.0512927109332295
Merged-chr1-136128644-2	chr1	136128144	136129144	+	652.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_046169, intron 2 of 2)	intron (NR_046169, intron 2 of 2)	2539.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	3.80502846517307	3.38662829082445	3.83305257080261	3.78003371434922	3.96936908549409	3.69635717936467	0.452880741205787	0.431874147528809	0.797114750192572
Merged-chr9-104233290-4	chr9	104232794	104233794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	29636.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	7.31300444602211	7.0978797412804	7.02423474943789	7.77386674914624	7.97148283313169	7.06833636793353	0.757707622268677	0.0125707426620079	0.118123812018109
Merged-chr4-48585435-6	chr4	48584982	48585982	+	724.694458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001356272, exon 1 of 10)	exon (NM_001356272, exon 1 of 10)	308.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	3.41968773404451	2.90184141810354	3.19985777560315	3.14527573532984	3.13374761661337	3.38255428846834	0.117183657238556	0.864584560189265	0.968297921776544
Merged-chr10-8518103-2	chr10	8517603	8518603	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177387, intron 1 of 7)	CpG	722.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.58941764731783	5.61642035203765	5.15004652434236	5.51603218223412	5.45852807666571	5.53866899172312	0.0349979517496938	0.920200584937979	0.982296874430043
Merged-chr11-80089438-4	chr11	80088983	80089983	+	924.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001029856)	promoter-TSS (NM_001029856)	83.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	6.14425821363346	6.44856635533946	6.30345424687936	6.41203053834559	6.45115403346301	6.2412496005476	0.117760030719501	0.676672084869981	0.912549881054299
Merged-chr8-107437901-2	chr8	107437401	107438401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025830, intron 1 of 23)	B3A|SINE|B2	1503.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	5.29898518430397	5.4471738706863	5.48744732469224	5.4898706872087	5.56783016664431	5.71053612345978	0.339337479601827	0.303832918170324	0.700300249727315
Merged-chr8-109777808-4	chr8	109777304	109778304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-779.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	6.10173221769306	6.33091528057991	6.11145328039691	5.91259542125582	6.29697435773505	6.01355163225016	-0.160977487770735	0.5971092868183	0.880155708648303
Merged-chr1-59484765-2	chr1	59484265	59485265	+	564.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008057, exon 1 of 1)	3' UTR (NM_008057, exon 1 of 1)	2618.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	3.26216544252671	3.11710088567874	3.13790330827352	3.32814907662663	3.11116718506788	3.68844809830475	0.855191104239779	0.197044422886659	0.584870414852249
Merged-chr16-36654780-2	chr16	36654280	36655280	+	787.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	11297.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.05547598000401	3.72468537850591	3.63398768782853	3.86363555225691	3.98489293691328	4.24567924641453	0.638145011804877	0.245235481103241	0.642381314494918
Merged-chr2-43555244-4	chr2	43554754	43555754	+	911.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289594)	promoter-TSS (NM_001289594)	-71.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	4.60086789002402	4.86553647370025	4.67058623266259	4.66639888269281	4.64617117138243	4.48249865089155	-0.270821753963408	0.515539529023556	0.843748414291459
Merged-chr10-40096022-3	chr10	40095534	40096534	+	894.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46220.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	5.78353690740667	5.77345604189383	6.09299117509596	5.74305594914654	5.88584253482378	5.62338460799345	-0.208728546125714	0.513476943902968	0.842597552908258
Merged-chr17-36022506-2	chr17	36022006	36023006	+	896.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_015618, intron 1 of 1)	RLTR13C2|LTR|ERVK	-1946.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	5.12590760953983	4.9718024664042	5.67077336575631	5.16325012232983	5.19143278518842	5.68426112462497	0.157772627006245	0.703981834610123	0.922296896558746
Merged-chr10-80260470-3	chr10	80259973	80260973	+	866.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010255, intron 1 of 5)	intron (NM_010255, intron 1 of 5)	539.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	4.61532256730413	4.21516704013656	4.90392304028195	4.07447007525152	4.30226991520574	4.420865187111	-0.834650879399549	0.0911534786915005	0.401774481140077
Merged-chr4-120405118-4	chr4	120404600	120405600	+	772.283325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159630)	promoter-TSS (NM_001159630)	-181.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	6.0153227337801	5.87953285402953	6.05641362892723	6.02037151920059	5.87591643588585	5.91065024011567	-0.0796149902334167	0.787410873564987	0.94877064431094
Merged-chr7-123149093-4	chr7	123148595	123149595	+	718.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 3 of 23)	intron (NM_144925, intron 3 of 23)	25210.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	3.6110085885583	3.57485959032982	3.61275193501361	3.77282693053897	3.5922748764132	4.23712165628531	0.935441645459648	0.106519755382713	0.435756922609872
Merged-chr2-147036050-2	chr2	147035530	147036530	+	813.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356402, intron 13 of 28)	intron (NM_001356402, intron 13 of 28)	23031.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	3.93554774815647	3.62775915444636	3.97723097072616	3.80421024516454	3.93001011208296	4.38349500873243	0.608797608334732	0.270379088280246	0.667299602638099
Merged-chr14-63411938-8	chr14	63411430	63412430	+	932.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	5257.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	6.73157368608012	7.30964432389284	7.07275547281618	6.97693959832781	6.99841087837198	6.46762504748601	-0.328745021645406	0.279992736359546	0.677712405642304
Merged-chr1-105865863-5	chr1	105865339	105866339	+	697.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85116.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	4.97070735209765	4.85275890480951	5.07901212636401	4.84441262993735	5.0528908413407	4.73914035343257	-0.146709192038921	0.708026221437961	0.923606271223831
Merged-chr13-38528897-3	chr13	38528400	38529400	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	-76.0	NM_001289598	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	4.81694952753725	4.3129444763198	4.87307555454628	4.53277612657405	4.01510281385377	4.57168453507393	-0.72902947440994	0.144100075237113	0.506710013959755
Merged-chr6-39205452-4	chr6	39204911	39205911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033430, intron 1 of 19)	intron (NM_001033430, intron 1 of 19)	1362.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	8.04575759427809	8.18321351124267	7.78380423630652	7.97562446267058	8.03722744461952	7.78750375801827	-0.112150625047606	0.63112370455017	0.89503760176249
Merged-chr7-127197088-2	chr7	127196588	127197588	+	668.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_144522)	TTS (NM_144522)	-1011.0	NM_027353	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	4.2197718195589	4.39056036341853	4.411635521272	4.36968413337264	4.63386209938967	4.64064352382177	0.542515863302448	0.218789311610065	0.61302559317272
Merged-chr7-100150606-4	chr7	100150146	100151146	+	950.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8631.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	7.55440319968087	7.54935191512968	7.23522237772925	7.51791352243208	7.66453249469544	7.38620349314969	0.104719789335269	0.666261801758513	0.908065584523142
Merged-chr17-56076036-1	chr17	56075536	56076536	+	540.0	f1_balb.idr	intron (NM_024432, intron 1 of 11)	B2_Mm2|SINE|B2	3297.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	2.43874197665875	2.36952779173619	2.74278061077813	2.54834404386783	2.42330328657809	2.51094809935772	-0.16164057964064	0.842290973137248	1
Merged-chr19-9984708-13	chr19	9984158	9985158	+	884.8012699999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011913)	TTS (NM_011913)	2012.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.03362780569501	7.33722268841227	6.68391516632888	6.86063633205725	7.05135847168735	6.52453983764091	-0.328301137047869	0.281712853531963	0.679800211118652
Merged-chr1-85276129-1	chr1	85275629	85276629	+	898.0	f1_balb.idr	Intergenic	Intergenic	-5563.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.78566710706374	2.73259456287785	2.95519567601895	2.36447986282088	2.27209450068439	2.97193198303391	-1.051836052302	0.617399274123604	0.888810836054056
Merged-chr9-65021701-4	chr9	65021211	65022211	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	6.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	7.33917630247636	7.5998562785685	7.26386947321747	7.2804480544123	7.26808543414744	7.22595763890389	-0.231374350677113	0.334955998609894	0.725335555818662
Merged-chr7-34305600-3	chr7	34305118	34306118	+	855.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20009.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	4.94680831668581	4.84197358648983	4.63962814228539	4.90659751915391	4.36929306682211	4.7069261360068	-0.340681948975081	0.435001419012183	0.798753078814766
Merged-chr19-4201282-2	chr19	4200782	4201782	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011237, intron 2 of 10)	intron (NM_011237, intron 2 of 10)	321.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	6.18508638047591	6.04706042738832	6.32185468036192	6.21020164599374	6.02174808907725	6.16408433553111	-0.0885552867687301	0.759245253730996	0.940311236380535
Merged-chr7-6170535-4	chr7	6170070	6171070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1943.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	6.67505832919436	6.83836938005412	6.55462222791027	7.02943450484195	6.95132864053004	6.52174897787045	0.252235075037725	0.369309155985758	0.754042064418889
Merged-chr9-3335579-4	chr9	3335076	3336076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026303, intron 1 of 11)	intron (NM_026303, intron 1 of 11)	345.0	NM_026303	67667.0	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	4.88459369836335	4.64012464549278	4.75740412536383	4.73753956400198	4.67416785295913	4.70585854668829	-0.139148961961472	0.728720364291138	0.930478966998914
Merged-chr19-55781862-4	chr19	55781372	55782372	+	815.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	40062.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.9156322077372	3.61049852215274	3.89905508430745	3.78755106524021	3.35457509725266	3.66651603337661	-0.68002847051968	0.243684920640049	0.64086208327192
Merged-chr8-86872306-4	chr8	86871805	86872805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	12953.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	5.78738223107647	6.04978036064694	5.79832599359862	6.00275327502473	6.09803912836327	6.37415460009309	0.465179237108599	0.132992207652362	0.487941073871765
Merged-chr4-125123451-4	chr4	125122964	125123964	+	830.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4417.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	6.16251102394365	5.88649545067224	5.99890254042882	6.09528666510005	5.92833299428099	5.78843344091845	-0.128612660699481	0.67383364759104	0.911654130589777
Merged-chr2-102825045-1	chr2	102824545	102825545	+	573.0	f0_c57.idr	intron (NM_001039150, intron 11 of 13)	MTD|LTR|ERVL-MaLR	76620.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	3.67757406327687	3.33637198106169	3.6700655329785	3.55960178726204	3.32700637972331	3.97307037312243	0.247073315686705	0.693081622814021	0.918823160537068
Merged-chr10-128301634-1	chr10	128301134	128302134	+	744.5	f1_c57bl6.idr	Intergenic	Intergenic	-1701.0	NM_133992	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	3.5014510710478	3.70695473027062	3.34098042779723	3.75187601731018	3.55720321663258	3.80017619328189	0.584388813233947	0.320383091400114	0.714253897125111
Merged-chr6-116014334-4	chr6	116013836	116014836	+	791.69165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19331.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.63832432584986	5.5300006636722	5.57463248773386	5.62557215708793	5.33186962992827	5.66380118968384	-0.0829258602574527	0.803063930529355	0.953422605427866
Merged-chr10-75215864-2	chr10	75215364	75216364	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	3474.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	2.8769730141932	3.19901785875779	2.75972247598048	2.96812275288835	2.8668334618267	3.14197184923918	0.132973352329804	0.856628389443717	0.966560323116284
Merged-chr2-168556276-4	chr2	168555781	168556781	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	34084.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.39565101271811	6.4753619611645	6.18935303238395	6.38529570041296	6.02561940341885	5.78250185192185	-0.448517099620368	0.155862280496047	0.525912186557138
Merged-chr9-25510798-4	chr9	25510303	25511303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	29206.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	7.12751721825803	6.78057099822588	6.69099478194033	6.49999048935633	6.67610803780473	6.32467858447919	-0.578548421222249	0.0429862686457472	0.260055361456691
Merged-chr1-40084584-4	chr1	40084058	40085058	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360801)	promoter-TSS (NM_001360801)	-156.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	3.87254663950816	3.66308412433172	3.80669372992955	3.78946802772031	3.51382294474244	3.61386311458182	-0.474011171095029	0.390231442733581	0.769547406615622
Merged-chr7-81571237-4	chr7	81570756	81571756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004185)	promoter-TSS (NM_001004185)	-36.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	7.03862839067351	7.17983739485719	6.94941369002108	6.90042988486183	6.67030913619155	7.12439597896493	-0.249161044608191	0.346625208798441	0.734734183510397
Merged-chr13-12520230-3	chr13	12519729	12520729	+	945.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_133643, exon 1 of 6)	5' UTR (NM_133643, exon 1 of 6)	221.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	2.3631943882795	2.41497979938243	2.52981091915661	2.14471310016455	2.22177665205148	2.28673750429282	-1.51716221618157	0.0852381248229778	1
Merged-chr11-101758750-3	chr11	101758265	101759265	+	742.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25809.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	4.20130783405039	3.93217006207172	4.14411750435267	4.04467408331093	3.55837735657965	4.02753561714288	-0.62185117533283	0.253865779058174	0.651117231535132
Merged-chr8-46888239-2	chr8	46887739	46888739	+	590.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98648.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	7.03561253048824	6.83412510647275	7.06724570816136	7.0512466945415	7.31960519727151	6.97801013281519	0.234813205466685	0.35946554930289	0.745709534440161
Merged-chr15-101267623-4	chr15	101267151	101268151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	805.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.07257787105078	5.28293738278571	5.55432008453449	5.07679663003671	5.06102749259164	5.28055828586738	-0.349335223376696	0.349248000144375	0.737251125047901
Merged-chr10-99088432-4	chr10	99087938	99088938	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18644.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	3.23342199544481	3.36857988023413	3.17429972193246	3.40032106038053	3.06208765778227	3.67642059045001	0.519729434526828	0.435565376842048	0.799156002652051
Merged-chr2-167381827-4	chr2	167381316	167382316	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32638.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.36000459889893	4.97228347222127	4.94878862769088	5.27585085256014	4.46359827942805	4.55485085533958	-0.614401587933889	0.194783852286106	0.582377821811796
Merged-chr3-37728398-4	chr3	37727974	37728974	+	861.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4114.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	3.81545276902928	3.91730567922689	3.45873420361951	3.15374978138598	3.23562817751521	3.58717882108443	-1.56218839694984	0.0154652946080339	0.135556329268439
Merged-chr8-70505870-2	chr8	70505389	70506389	+	722.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_025577, exon 3 of 5)	exon (NM_025577, exon 3 of 5)	537.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	4.48598385326842	4.51808406720395	4.50221578190841	4.72034309464331	4.00808560995852	4.48533155311008	-0.169076032158501	0.728804635036837	0.930478966998914
Merged-chr11-75454649-4	chr11	75454151	75455151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	66.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	7.6233879538186	7.81983736780374	7.56774507741569	7.60310996449309	7.39912270260176	7.30413703540301	-0.341686094086196	0.149254482105371	0.515532044293221
Merged-chr3-96558407-3	chr3	96557910	96558910	+	897.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023719, exon 1 of 8)	exon (NM_023719, exon 1 of 8)	453.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	6.83083766287418	6.78733897947049	7.09208944955208	7.45272359439039	7.67308244396422	7.50540033041656	0.971908355475321	6.96248318588618e-05	0.00207944831633603
Merged-chr17-47777123-2	chr17	47776623	47777623	+	702.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-8621.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.89212757986192	3.13331564846364	3.26502652418261	3.05422095378738	3.08981882478931	3.38802732150919	0.336945956874039	0.61973209415109	0.889893663004537
Merged-chr9-66887015-4	chr9	66886557	66887557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	32648.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.6270149995925	7.62277749634839	7.17996223694796	7.627084754462	7.56158055827709	7.4156847608637	0.0550638398884621	0.826241267860364	0.959130347937145
Merged-chr19-8872220-2	chr19	8871720	8872720	+	722.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001362044, exon 4 of 9)	exon (NM_001362044, exon 4 of 9)	672.0	NM_001362044	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	6.37744623443171	6.35754693935852	6.32723132261511	6.25458827438734	6.23107903503024	6.24763511701219	-0.185642397965188	0.490608540237718	0.830102183404204
Merged-chr7-84665545-2	chr7	84665054	84666054	+	641.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	13842.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	3.03704552363454	2.8091632295227	2.98744844064914	2.80462732704117	2.91705981087785	3.05928929503569	-0.0909047529491632	0.896616168742483	0.975838835430135
Merged-chr11-70467272-2	chr11	70466772	70467772	+	559.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7288.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	7.57152434680276	7.06808475017011	7.43896980933369	7.37488304035656	7.59502758857696	7.53593987936182	0.19205614711502	0.456496357420673	0.811680471504093
Merged-chr5-88508712-4	chr5	88508233	88509233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19164.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	6.62674230035702	6.70420334658144	6.76137089879541	6.94712656587429	7.16970552702563	6.97924789314022	0.534895942993716	0.0323288646892788	0.218523165967954
Merged-chr15-81811404-4	chr15	81810921	81811921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	7.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	8.08772553666804	8.20706112623196	7.96175628011405	7.98972937867339	8.06630829076008	7.69516116349356	-0.225066214756898	0.329923321065178	0.72157339201449
Merged-chr5-23115615-1	chr5	23115115	23116115	+	721.5	f0_balb.idr	intron (NM_029990, intron 2 of 2)	RLTR11A|LTR|ERVK	318738.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.26596233631357	3.38583066080653	3.57364824072799	3.16427064321234	3.1932951061833	3.09063387020142	-1.04803474220076	0.10180306473669	0.425710869100299
Merged-chr2-174343032-2	chr2	174342532	174343532	+	701.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077507, intron 4 of 10)	intron (NM_001077507, intron 4 of 10)	12943.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.69082459486592	5.6689421962592	5.40236336757627	5.66493468236278	6.06306381308599	6.06579240627256	0.614246583497061	0.0647450068507562	0.331648764469202
Merged-chr5-146782949-2	chr5	146782449	146783449	+	592.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	12007.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.22495193026861	6.53304200141691	6.68001281455739	6.7112467286686	6.98285795389838	6.79988259345622	0.561975164374013	0.0447303240592195	0.266670545555602
Merged-chr9-110666114-4	chr9	110665616	110666616	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	9613.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.39246662837388	5.40519655462627	5.37803199408746	6.07336228175604	6.01493773915869	6.02514672663058	1.17571241310386	0.000135219545194152	0.00365778540848992
Merged-chr18-61094751-2	chr18	61094251	61095251	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-10821.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	4.91304510394429	4.91345637722972	5.44589667810409	4.77804021540173	5.15756214314506	5.45476367451422	0.0999214750453293	0.815556622592115	0.956406058187625
Merged-chr14-25735592-4	chr14	25735102	25736102	+	873.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	33254.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	3.29515661167886	3.48915673183677	3.32891228622374	3.46617753511785	3.12403788842242	3.45626637534602	-0.0919055363705744	0.883407462962535	0.973362870329156
Merged-chr5-101753827-4	chr5	101753309	101754309	+	829.779175	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5c|LINE|L1	-11321.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	2.7564523002401	2.55290403049489	2.81630362013368	2.81941216379218	2.7350960524253	2.70382695621795	0.236480250564062	0.750754871251061	0.937615268276031
Merged-chr10-62431299-2	chr10	62430799	62431799	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8842.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	2.91065060967313	2.83603259110315	2.72906333887322	2.93498974124873	3.10229462282185	3.04964663780401	0.976774270001783	0.167632985597778	0.543670309698313
Merged-chr9-124014367-1	chr9	124013867	124014867	+	878.6666869999999	f0_balb.idr	Intergenic	Intergenic	-7604.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	6.22075981096019	6.74273915138561	6.4969913581111	6.41436012913358	6.34926215343264	6.70317326297871	-0.0285734071909873	0.924413150111356	0.982960139621551
Merged-chr10-41519326-5	chr10	41518825	41519825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-175.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	8.80809761648703	8.79743704611047	8.38421350058638	8.71995868960846	8.75174168664842	8.66785955843122	0.041898965249911	0.850352613804286	0.964860844223297
Merged-chr17-29394305-4	chr17	29393785	29394785	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33371.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	7.96445558395278	7.51632561038351	7.08086363589333	7.78861683768768	8.03958193498439	7.27363372853403	0.239854436079189	0.465393767428345	0.816993516517273
Merged-chr13-81024743-4	chr13	81024245	81025245	+	957.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	60671.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.73257927755461	7.15850176185131	7.09277982724714	6.92546190744326	7.31113603528287	7.07416127519565	0.170567625056349	0.532781223862707	0.851971173271146
Merged-chr14-54771897-2	chr14	54771394	54772394	+	629.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016972, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	9992.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	4.41523275383889	4.46273604936252	4.69133561898221	4.94030533873204	4.9989818381986	5.01158316520571	1.0810846178089	0.00697317014131883	0.0779032681416296
Merged-chr11-94118827-3	chr11	94118353	94119353	+	921.511108	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025428, intron 26 of 26)	intron (NM_001025428, intron 26 of 26)	74648.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	3.85872908535577	3.71680712722752	3.76608526089272	3.83127063544946	3.42193171766444	3.7328599977825	-0.382717783773429	0.496313933077708	0.832976113266569
Merged-chr19-60889264-3	chr19	60888749	60889749	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	-500.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	6.05744412940001	6.29742683190876	6.89794987290604	5.46997612017891	5.67721311889905	5.98253912592384	-1.26329631374688	0.000593121810917297	0.0120401267730682
Merged-chr18-82902738-4	chr18	82902256	82903256	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8123.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	4.7077050993387	4.54603424164919	4.51183662624352	4.48332232173921	4.36828307166273	4.57852631296474	-0.307951508470574	0.470195323916754	0.819351047381472
Merged-chr11-51917246-4	chr11	51916765	51917765	+	944.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-50366.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	7.52764974617842	7.58111651760702	7.69516964059166	7.57491361063576	7.57327056850413	7.26093005710331	-0.166548678689203	0.479685803098604	0.824364286685341
Merged-chr2-124740148-2	chr2	124739648	124740648	+	794.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86567.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.81149764829114	3.85403544560612	3.98849092871497	3.6058183149968	3.65644973289614	4.05590552267624	-0.334268948419501	0.540548048383607	0.85637977208932
Merged-chr15-27630010-4	chr15	27629507	27630507	+	842.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013792, intron 1 of 6)	(TG)n|Simple_repeat|Simple_repeat	686.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	6.62984134623832	6.67361034403578	6.47143912792745	6.85987345660658	6.77521001069774	6.73708108727296	0.301244896545497	0.238660257120106	0.635429498094514
Merged-chr2-29003611-2	chr2	29003111	29004111	+	622.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	51455.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	4.47880952401084	4.06676905127395	4.6847920956976	4.42753589154151	4.55517184481007	4.43344474830872	0.127688534184371	0.787665228928598	0.94877064431094
Merged-chr17-23747871-2	chr17	23747270	23748270	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1466.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	2.66373052034169	2.81336783932174	2.97938714064541	2.86689797264917	2.58471690134089	2.81617706512092	-0.322259786100278	0.667608079011713	0.90879890451381
Merged-chr17-46680340-4	chr17	46679870	46680870	+	967.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_102392)	promoter-TSS (NR_102392)	-83.0	NM_001277310	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	6.27630314486696	6.12883269589153	6.4036846495708	6.33154754449634	6.36493331782949	6.33213316405404	0.128483227073881	0.641859605554217	0.899197812256171
Merged-chr16-36658616-2	chr16	36658116	36659116	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	L1MD2|LINE|L1	7461.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.01188842279503	3.52617471842931	3.90918833186889	3.82608244186766	4.06682255225716	4.16311187879425	0.585811256855069	0.288494450470125	0.685917256756813
Merged-chr9-54732417-2	chr9	54731917	54732917	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025376, intron 1 of 10)	Tigger17a|DNA|TcMar-Tigger	2132.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	2.81409722453151	2.93294545175592	2.90190737497259	2.97765881641337	2.9986330541394	3.26013530766267	0.914455772504795	0.185111395380099	0.569207279629981
Merged-chr10-39420035-4	chr10	39419537	39420537	+	983.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	50238.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.97267671742073	6.73386317196932	6.61992350988906	6.85566468255177	6.97058343051645	6.35331290304688	-0.0349332308441979	0.906590739861203	0.97878370342479
Merged-chr10-43672605-4	chr10	43672099	43673099	+	940.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73559.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.15890243665865	4.47463550795955	3.96781590257901	4.39621531430172	4.45806979112038	4.33856883662199	0.450140303602854	0.353815042481479	0.74093981667364
Merged-chr2-51372931-4	chr2	51372435	51373435	+	974.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64965.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	4.34130519181207	4.43874644659868	4.34140305025349	4.02148010664611	3.9371368000447	4.18591658542512	-0.935229900813905	0.0466095317256867	0.273157199311941
Merged-chr4-118152202-4	chr4	118151688	118152688	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17242.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	5.22549313804068	5.87906628448671	5.83238707400694	5.23463012400525	5.37441224114783	5.11988302591874	-0.80854664214472	0.0354863921003187	0.231279996387821
Merged-chr8-13964674-4	chr8	13964173	13965173	+	975.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	10104.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	2.69257039311109	2.45779367733378	2.74146414953785	2.45696963035516	2.44719140068015	2.6329627759775	-0.713507524959764	0.370815844668212	1
Merged-chr17-45595361-6	chr17	45594798	45595798	+	997.4722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357771, intron 1 of 13)	intron (NM_001357771, intron 1 of 13)	274.0	NM_001199116	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.24388340294387	6.39320055452559	6.43117186555225	6.14294494390561	6.13422296890949	6.38213469515612	-0.231571224792715	0.410127331207503	0.783116615634315
Merged-chr2-167336827-2	chr2	167336327	167337327	+	631.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	12351.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.1760710064173	4.05339353286058	3.92704063758079	4.02982560552991	3.83926880699929	4.04641969848022	-0.276501548543507	0.580220825367967	0.87276422265422
Merged-chr16-16302542-2	chr16	16302042	16303042	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-423.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	7.15480469232719	7.35758685894149	7.33662157767756	7.03700812730381	7.10926048241385	7.34008635414763	-0.183136220018321	0.453807452471552	0.809979841654596
Merged-chr19-4793990-4	chr19	4793493	4794493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	16.0	NM_001290124	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	6.59120388647617	6.55265722163138	6.85682333592953	6.966814713987	6.9734064214462	6.88662138549879	0.438055119679941	0.0866913555504878	0.390082971698302
Merged-chr10-77964192-4	chr10	77963696	77964696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	5676.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	7.09733789358733	7.00480465214873	7.21422297277258	7.26862519246887	7.66367345211432	6.87950250626421	0.327323414376791	0.260141905117514	0.657649400461384
Merged-chr11-117312553-2	chr11	117312053	117313053	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-19162.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.19240083616499	4.40418782384479	4.22347552955594	4.15129633280539	3.50961897694197	4.1075403330043	-0.939295486284581	0.0939363961975292	0.408306357614863
Merged-chr19-29391445-4	chr19	29390950	29391950	+	976.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19469.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.68698679796383	4.35963585636845	4.37512765078377	5.11615327407723	4.89263881506075	4.62834100253321	0.958496496864752	0.0291457945894249	0.20503842568338
Merged-chr4-20008282-5	chr4	20007797	20008797	+	797.840027	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001317723)	promoter-TSS (NM_001317723)	-32.0	NM_015767	50500.0	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	2.43489731678598	2.20446897992035	2.41238125830897	2.14234974005055	2.1362420463568	2.22749508377715	-1.33187575328453	0.135914215084617	1
Merged-chr11-43656688-4	chr11	43656194	43657194	+	912.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25304.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	3.17644363581239	2.97299738426755	3.36364186588373	3.22918106696386	3.28884647867138	3.15389442914249	0.22674512199737	0.728775298726391	0.930478966998914
Merged-chr8-84689226-4	chr8	84688691	84689691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164560)	promoter-TSS (NM_001164560)	-56.0	NM_001164559	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	5.56002362605825	5.3955147362408	5.70668073257992	5.49744087768423	5.43677433282216	5.50022225008175	-0.143365461233897	0.664987017103784	0.907721942545399
Merged-chr2-45827255-2	chr2	45826755	45827755	+	654.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	130650.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.20393206682054	4.20344500910292	4.46826497900971	3.953244551487	4.22187014332193	4.28729356707007	-0.353825903862806	0.461891628618188	0.815107818354545
Merged-chr9-120817138-3	chr9	120816687	120817687	+	762.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	98063.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	4.30464813226656	4.12875302783442	3.68345407657209	3.19651727812135	3.23452506754181	3.5263019801973	-2.81083641008628	2.09387229640891e-05	0.000758167650302841
Merged-chr15-83010728-2	chr15	83010228	83011228	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028728, intron 3 of 5)	intron (NM_028728, intron 3 of 5)	12410.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.15634678515891	4.10105803539887	4.83180403553447	4.34003812026339	3.96003874325371	4.69576128215877	-0.100134328953966	0.856361053503352	0.966498502206484
Merged-chr15-99122634-7	chr15	99122150	99123150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	-4195.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	7.35960739597811	7.60607042902632	7.51088827135338	6.93782922081867	7.08186206023284	7.12788014681251	-0.664845489419516	0.00536775172667659	0.0643017399472079
Merged-chr14-60432340-3	chr14	60431776	60432776	+	896.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	53990.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	3.00440170152302	3.07334443104441	2.86247260266148	3.10716908824124	3.21077245591756	3.29557618191803	0.955584028548421	0.156985961131126	0.527819939138464
Merged-chr1-88231239-2	chr1	88230739	88231739	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 5 of 41)	L2c|LINE|L2	4219.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.38140151088927	3.50732384245418	3.53448397169866	3.35878056719018	3.35825861151709	3.7530946952749	0.0736413341358601	0.902275826640172	0.977439591001363
Merged-chr4-40963155-4	chr4	40962673	40963673	+	877.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029814, intron 7 of 7)	MTC|LTR|ERVL-MaLR	-7733.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	4.19785093654883	4.04870662341514	4.16840827871658	4.24143642682427	4.32448011820199	4.75453280740232	0.827763813912781	0.0848232490483912	0.385702656255453
Merged-chr19-17396954-3	chr19	17396402	17397402	+	700.733337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019437, intron 2 of 3)	URR1B|DNA|hAT-Charlie	2859.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	3.66031356680039	3.67951479611292	3.74988401442712	3.28676646281632	3.41798819687013	3.61782689309122	-0.915678875388559	0.114543798954185	0.452032914562748
Merged-chr5-31220695-4	chr5	31220214	31221214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-169.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	7.49155389049928	7.6420203140591	7.53403380560633	7.34573194877483	7.54590399087302	7.49148607340744	-0.136598846892344	0.54800818337035	0.859456555901125
Merged-chr19-30032448-4	chr19	30031952	30032952	+	830.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1939.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	6.10123508455046	6.1674753923022	6.00741407774275	6.3235636122369	6.36309618708774	6.22405583404153	0.352884601772406	0.206300366534667	0.596855755513016
Merged-chr9-105139393-4	chr9	105138908	105139908	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5674.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	3.22324541221472	3.40216359957917	3.18769906583036	3.13445530522088	2.94293966746225	3.20175461264755	-0.807956024208952	0.218562194197273	0.61273880821229
Merged-chr7-100176504-4	chr7	100175997	100176997	+	993.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190869)	promoter-TSS (NM_001190869)	-173.0	NM_001190869	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	2.93186644075218	2.88204949457621	2.75252071387325	2.89462122414009	2.84826170376093	2.95072887032775	0.16792391305081	0.810983802889467	0.955096593239846
Merged-chr8-95138381-2	chr8	95137881	95138881	+	799.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	4159.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	4.15399579724053	3.81142413588395	4.25256809088637	4.08179880806343	4.18953454795746	4.36131537917038	0.372759009142162	0.456675628578346	0.811807496313756
Merged-chr2-170120548-2	chr2	170120048	170121048	+	720.25	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159683, exon 3 of 7)	5' UTR (NM_001159683, exon 3 of 7)	10672.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.38325497069456	4.34024802993031	4.74044269449773	4.59176526238209	4.37940791405825	4.73285954103286	0.193145422286815	0.66737502081885	0.908729013673458
Merged-chr13-92484931-2	chr13	92484431	92485431	+	775.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-900.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	3.18574031747621	3.25435996213039	3.57859429977996	3.37843610877325	3.21208628040223	3.4433821122836	0.00302333408597388	0.996155619816602	0.998961028701257
Merged-chr5-151057189-4	chr5	151056686	151057686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153382, intron 7 of 13)	intron (NR_153382, intron 7 of 13)	104579.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	4.84070863718547	4.52176800816383	4.96096772517198	4.79225877740962	4.57099043868934	5.29764749788967	0.290860013423142	0.521680386986494	0.847183372504239
Merged-chr17-81663143-1	chr17	81662643	81663643	+	722.0	f0_balb.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	75244.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.39155426209987	4.16359414548506	4.37692226933065	4.38578607412175	4.1983266859318	4.44372489039577	0.0736182438477756	0.872016984594091	0.970261003150518
Merged-chr14-61737627-2	chr14	61737091	61738091	+	603.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-55218.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.94466031048918	4.84030773519006	4.75728801422271	4.83589232904562	4.68782585838226	4.33244659591145	-0.476826956924712	0.265526150948129	0.663271488345057
Merged-chr4-48108825-4	chr4	48108320	48109320	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16099.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	4.65310402260509	4.71258358113854	4.19543477929064	4.60635567344993	4.8864882220542	4.26786553105419	0.17698584974087	0.719668823644407	0.92793360927861
Merged-chr15-95822196-4	chr15	95821674	95822674	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7898.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	7.84348765997797	7.64586496540424	7.42792981006756	7.39688376857729	7.64302600216324	7.53682079953361	-0.18175717096464	0.455293513324389	0.810857273104082
Merged-chr8-45414089-2	chr8	45413589	45414589	+	604.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3470.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	3.12189231580014	2.6562498135021	2.75566330320435	3.01202369137885	2.96633473845575	3.30451737812814	1.07467826224496	0.162838112592552	0.536188662408322
Merged-chr4-155694266-3	chr4	155693762	155694762	+	942.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178699)	promoter-TSS (NM_178699)	-80.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	5.52826596632437	5.50278193142842	5.53139792513421	5.32009211396871	5.08407484634482	4.6636722774692	-0.9136770724484	0.0194848788810242	0.158686287749071
Merged-chr17-46161854-4	chr17	46161351	46162351	+	725.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357745)	promoter-TSS (NM_001357745)	-213.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	5.8946456811652	6.22491991067119	6.24444928728228	6.18430546184385	6.65931472676053	6.52527080624181	0.576160393955226	0.060508687673229	0.318564324858752
Merged-chr16-23305913-4	chr16	23305408	23306408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	15438.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.29375605576762	5.95185172487103	6.23705380221222	5.93779771076033	5.70736824099334	5.90690745166508	-0.552436758397225	0.072435982625444	0.353484205073927
Merged-chr1-37906095-2	chr1	37905595	37906595	+	790.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033427, exon 6 of 6)	3' UTR (NM_001033427, exon 6 of 6)	10398.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	2.80815554392278	2.70111020684059	2.92936874669654	2.69208441322425	2.76052237361467	2.8846457559993	-0.171059382261975	0.813067460599278	0.955898513056089
Merged-chr9-21716429-2	chr9	21715929	21716929	+	818.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-7147.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	5.01969033853661	5.35160309343547	5.6405958009234	5.4858474713047	5.8239501473874	5.87084045877082	0.729223363889432	0.0481362858154479	0.278147504870263
Merged-chr12-117480392-2	chr12	117479895	117480895	+	954.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36084.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	7.15975562102436	7.35518966904291	6.8555841801689	7.31215993059614	7.51517706201297	7.23028846668476	0.317757713628441	0.227906757960405	0.622981752321771
Merged-chr3-108382526-4	chr3	108382001	108383001	+	871.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040560, exon 2 of 3)	non-coding (NR_040560, exon 2 of 3)	1240.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	6.47833546150698	6.10500474222336	6.22246359959451	6.50909366209597	6.4613798090506	6.21922534842148	0.210966890031074	0.469858156273459	0.819154980713479
Merged-chr12-116047672-4	chr12	116047172	116048172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004066)	promoter-TSS (NM_001004066)	-52.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	6.71716902321778	6.97140634886	6.76277683527787	6.53759055495005	6.73183740565209	6.77552115866679	-0.222110273217474	0.396816796042896	0.773765492504153
Merged-chr12-3862365-3	chr12	3861871	3862871	+	895.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045884)	promoter-TSS (NR_045884)	-127.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.97185882969735	4.93536872020598	4.39678568323347	4.86448184013373	4.87936077490885	4.65329295205084	0.00381652548554061	0.993037918608855	0.998646946749805
Merged-chr16-76337785-2	chr16	76337285	76338285	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35264.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	5.85770617758787	5.80481333034402	5.66673350909641	6.20790186329549	6.35387076961533	5.61110235531638	0.570494745246659	0.0974509034407682	0.416236064550046
Merged-chr17-87255858-4	chr17	87255360	87256360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_139295, exon 4 of 4)	3' UTR (NM_139295, exon 4 of 4)	10087.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	7.51978599172246	7.52777535817394	7.1478888240162	6.73009983773187	6.94372822790237	6.93674825834974	-0.818951231519737	0.00138527493616624	0.023253168627904
Merged-chr6-108341327-3	chr6	108340829	108341829	+	960.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010585, intron 5 of 61)	intron (NM_010585, intron 5 of 61)	128233.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	3.56934694301659	3.46963960733632	3.5225735805304	2.95205197970982	2.66704570358329	3.02120704889597	-3.39898025678113	5.20717793316302e-05	0.00163624947682262
Merged-chr7-30588365-2	chr7	30587857	30588857	+	1000.0	f0_balb.idr|f0_c57.idr	exon (NM_001290573, exon 1 of 37)	exon (NM_001290573, exon 1 of 37)	369.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	6.14142093030909	6.08590439570337	6.49351049677397	6.67381975992225	6.06410557462705	6.66490005358057	0.403454603771772	0.218155377146626	0.612404190871309
Merged-chr7-118705764-4	chr7	118705266	118706266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019580)	promoter-TSS (NM_019580)	-28.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	7.60653585775384	7.66856963672468	7.13013084241824	7.90851136406165	8.11185509735933	7.58549577933063	0.567906864854533	0.0389942477144163	0.244889209655076
Merged-chr2-12314189-4	chr2	12313691	12314691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12247.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	3.81416326274488	3.45641606869561	3.63381459593998	3.82397486937283	3.86464181299717	3.95840208923649	0.774313001973852	0.159241212799751	0.531238185977133
Merged-chr4-128663462-2	chr4	128662962	128663962	+	718.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	B3|SINE|B2	8760.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.04858551491378	4.23645713157969	4.36389202375979	4.03415369796154	3.74302200943365	4.30711443941125	-0.516335651653193	0.321389804107708	0.714837665357421
Merged-chr11-117778197-2	chr11	117777697	117778697	+	817.642822	f1_balb.idr|f1_c57bl6.idr	intron (NM_145439, intron 5 of 19)	intron (NM_145439, intron 5 of 19)	1451.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	5.28628188982042	5.63180305581834	6.00079586711877	5.34389019027148	5.45297897589018	5.75074922733012	-0.265478507595543	0.480517969180242	0.824543506620807
Merged-chr15-59645878-2	chr15	59645378	59646378	+	927.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33A|LTR|ERVL	-2776.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.51112749590456	3.11802810222318	3.16647526426383	3.17045817575382	3.05751345181582	3.35347574915722	-0.359723334711114	0.587250214303067	0.875775890881434
Merged-chr8-122429272-2	chr8	122428772	122429772	+	813.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301284, intron 1 of 4)	B2_Mm2|SINE|B2	3668.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	7.04551686791602	7.12026511394444	6.75706583649164	7.12561983657899	7.26858185877949	7.05216000232148	0.24791866401897	0.330228579274095	0.721789606895393
Merged-chr17-7897949-4	chr17	7897456	7898456	+	982.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28044.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	5.09828821440129	5.29315085732286	4.75698244914285	4.90920594536847	5.1313335463523	4.78282942591621	-0.255623223231442	0.532550924953905	0.851971173271146
Merged-chr16-38460299-4	chr16	38459780	38460780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	1347.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	6.59640177762525	6.68158287961093	6.36279004743605	6.53189088457907	6.56311318438908	6.96431131520342	0.207023218632068	0.469648874794723	0.819030003012138
Merged-chr16-91385754-4	chr16	91385266	91386266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347258, intron 3 of 7)	intron (NM_001347258, intron 3 of 7)	12983.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.34969701311672	6.8536520773214	7.18051770102159	7.27428056937637	7.27243617087157	7.42629147567473	0.267979629993094	0.303597155431419	0.700122713774969
Merged-chr9-50552405-4	chr9	50551896	50552896	+	975.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	1266.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	6.01520034793548	6.16662486574108	6.27065024813969	6.23759002045171	6.34110409905015	6.51146396153392	0.35691085577837	0.209763252268765	0.601570989687028
Merged-chr7-16239877-4	chr7	16239360	16240360	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	2471.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	4.93801638606604	5.07739254783315	5.07340571593226	5.20331482822357	5.0439775695167	5.17107556329802	0.226350635166001	0.533571090935771	0.852484319020423
Merged-chr11-106090859-4	chr11	106090274	106091274	+	978.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	B1_Mur2|SINE|Alu	5872.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	6.12464468081958	5.75665944724094	6.34618857516848	6.12650309060446	5.94171879057791	6.00109488427098	-0.109712184457098	0.7326775730962	0.931839011711124
Merged-chr8-85408298-4	chr8	85407785	85408785	+	966.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_025722)	TTS (NM_025722)	24556.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	3.66884956929514	3.52587607374686	3.44010299906155	3.55257934453091	3.37602000280829	3.91740873368849	0.259999843640555	0.66604996193862	0.907960570164785
Merged-chr13-4772765-2	chr13	4772265	4773265	+	802.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163601.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.27081460560361	4.28164589407317	3.92073982571123	3.92163178541427	3.54399813975356	4.08999113822125	-0.929600262890177	0.0925566682987482	0.405215908567243
Merged-chr12-102371125-3	chr12	102370572	102371572	+	929.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	68741.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	5.18017588865431	5.23302696483369	5.19611248455443	4.99935220134551	4.91433305964391	4.91082635097929	-0.553850069299847	0.125978100719043	0.474743679619431
Merged-chr18-80464916-4	chr18	80464427	80465427	+	994.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026295, intron 1 of 12)	RLTR12B|LTR|ERVK	4740.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	3.05039235809879	3.05987112435379	3.34819825638395	2.89196206610453	3.11915338801587	3.20432117072514	-0.335318897996165	0.621078821398976	0.890517830251339
Merged-chr8-71395806-2	chr8	71395306	71396306	+	993.4166869999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-5.0	NM_181418	234395.0	Mm.34874	NM_181418	ENSMUSG00000034911	Ushbp1	2210404N08Rik|9430064H24|AIEBP|MCC2	USH1 protein network component harmonin binding protein 1	protein-coding	3.86406300389614	4.25888389801422	3.97084610023042	3.96858877497333	3.99361126765523	4.39525505027322	0.222529790541209	0.670443618443176	0.910029595108128
Merged-chr4-137338651-1	chr4	137338151	137339151	+	582.5	f0_balb.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	19108.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	3.41264350241021	3.71782078591382	4.12716253914046	3.87797594798223	3.72238975375511	4.15188656848314	0.450480461682378	0.452009917515725	0.809286173636239
Merged-chr7-90457225-4	chr7	90456705	90457705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025460)	promoter-TSS (NM_025460)	3.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	6.37231044583535	6.6411878211792	6.65680430162768	6.58063144800948	6.65179740903555	6.21012516949806	-0.0850604164228376	0.768475597647605	0.942871018290895
Merged-chr12-85965184-2	chr12	85964684	85965684	+	653.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	113857.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	3.98537170703638	4.0797975926509	4.16987142157309	3.8182550027629	3.75327811619718	4.32007944936333	-0.295438777182707	0.578991360120991	0.872437129840066
Merged-chr4-149843093-4	chr4	149842608	149843608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC1|LINE|L1	-68841.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.81226223139977	4.62960568680585	4.70722264107485	5.03643908545218	4.79100250354654	4.69235462064923	0.302118708598686	0.454904534551508	0.810663309750856
Merged-chr11-114653857-4	chr11	114653355	114654355	+	986.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14688.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	2.72608413187934	2.65400030874047	2.79333273034457	2.72317874713659	2.88526946404395	2.86601285376581	0.547029068856964	0.449146481761828	0.807594795348397
Merged-chr13-113869438-4	chr13	113868927	113869927	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	74919.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.63241319943145	4.50354845491881	4.62267553722879	4.53977064340661	4.48902133957356	4.6882704594743	-0.0429324847532405	0.918065619109614	0.981747877135909
Merged-chr15-59081385-6	chr15	59080893	59081893	+	836.361084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	CpG	633.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.73140190584636	6.83536966225868	6.6261564075195	5.94047741465535	5.9578110396604	5.86301899557491	-1.34291149965138	1.20019061380674e-06	6.35880992680786e-05
Merged-chr11-8709747-4	chr11	8709235	8710235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD1|LINE|L1	-45200.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.71748668863496	5.93534272524254	5.52154960003982	5.93843520217173	5.8392965223847	5.49194121568652	0.0606929273417639	0.858015293854433	0.966785186918462
Merged-chr7-29993551-2	chr7	29993074	29994074	+	740.75	f0_balb.idr|f1_balb.idr	intron (NM_001033355, intron 4 of 9)	intron (NM_001033355, intron 4 of 9)	9619.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	4.82499171960919	4.83020744280486	4.34499239777384	3.44044727434392	3.43018016602769	3.97572444488911	-3.23332477721074	0.00199485668696683	0.0309217651283785
Merged-chr2-158175646-4	chr2	158175139	158176139	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16369.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	8.4231641457637	8.42956430610454	7.9948015212375	8.12518295572358	8.29785859548428	7.66550081818286	-0.334138498033325	0.214455063065913	0.607538973573768
Merged-chr11-119267934-4	chr11	119267444	119268444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-19.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	8.59861039886347	8.85735309706012	8.16609762685974	8.28536365654223	8.48587347960581	7.67509180607416	-0.521748911432582	0.0844305533013932	0.384589559265469
Merged-chr19-4069916-2	chr19	4069416	4070416	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10469.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	3.27948467345114	3.57669394408757	3.81283671566192	3.51352806152904	3.34603836818842	3.97003532819814	0.20920447975423	0.743802990128889	0.935808433727598
Merged-chr11-69059219-1	chr11	69058719	69059719	+	1000.0	f0_c57.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-556.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	7.27091011636485	7.01928685972526	7.40921244449473	7.25891874022211	7.7539521763327	7.52644604992535	0.437184896213769	0.0995527784770464	0.420731832330245
Merged-chr5-99234632-4	chr5	99234124	99235124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145839, exon 5 of 14)	exon (NM_145839, exon 5 of 14)	18303.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.55805928332917	6.60117665819771	6.61348032136672	6.5784942313792	6.59703004196012	6.46222939709466	-0.0603703127154945	0.814693023550628	0.956369939298364
Merged-chr14-67012629-3	chr14	67012086	67013086	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3709.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	3.12613534380969	3.52495272954083	3.37504849818222	3.15787454129755	3.12212114734387	2.9691474889661	-1.11014921824233	0.100818089862433	0.423466512936565
Merged-chr17-57248490-4	chr17	57247968	57248968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-779.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	5.98299278090125	5.81647804471208	6.40187671840314	6.16577241850973	6.13263415817462	6.55993093181892	0.359649881891075	0.274724306625029	0.672147114659483
Merged-chr6-82998503-2	chr6	82998041	82999041	+	740.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_033079, intron 4 of 9)	B3|SINE|B2	34930.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	5.77853705379287	5.40568097945337	6.02765766602933	5.73765773342357	5.85906619098109	6.02424629731171	0.222234600183277	0.517042420714053	0.844464054936108
Merged-chr11-8659327-2	chr11	8658827	8659827	+	832.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	5208.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.03660598467364	4.30993430222532	3.937662764125	3.73749710209843	3.76140298544266	3.95746201259826	-0.902735720753408	0.0831789258821569	0.381519875685051
Merged-chr4-150566384-4	chr4	150565895	150566895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	85779.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.38591781251765	6.31711949631073	6.41926001820637	6.12007642534886	6.44976398700022	6.11513490548173	-0.200867081469904	0.485108320427129	0.827336504644498
Merged-chr11-110403804-2	chr11	110403304	110404304	+	810.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	4702.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.64781663752014	2.67230714745878	2.61827156224227	2.72332983039758	2.77372621470149	2.87741906016968	0.765922287185366	0.297934770230776	1
Merged-chr11-60769622-4	chr11	60769130	60770130	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	MTA_Mm|LTR|ERVL-MaLR	7735.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	7.10730598684369	7.0080735114854	7.03752373894374	7.10306259015307	7.26727001471477	7.12130891484632	0.178639421273539	0.451789033117296	0.809245753174589
Merged-chr5-147861454-1	chr5	147860954	147861954	+	541.0	f0_balb.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	826.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	6.84066199461284	7.28254055360338	7.11690154041177	7.24222984655425	7.3093815549916	7.11101435465135	0.201023200527111	0.43611556691018	0.799461119181469
Merged-chr1-152424940-4	chr1	152424459	152425459	+	833.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	25092.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	3.23462093046197	3.34862393257158	3.07935491183218	3.27054057725569	3.62648169316976	3.61092088659053	1.08662920969511	0.0926628177623997	0.405505824149246
Merged-chr6-125145845-5	chr6	125145376	125146376	+	902.466675	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001302779, exon 1 of 9)	exon (NM_001302779, exon 1 of 9)	652.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	6.54718544223571	6.49055209922375	6.44850654312828	6.32074858261132	6.5627202183361	6.6283580473696	0.0166621881523934	0.950729696165381	0.988495627316711
Merged-chr10-67026085-2	chr10	67025585	67026585	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	ID_B1|SINE|B4	21010.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	7.79095158888585	7.80803650465918	7.44595204750792	7.54552466043541	7.98874168086653	7.42600582473935	-0.0151609048605382	0.955120689303847	0.989721943182288
Merged-chr11-46442086-1	chr11	46441586	46442586	+	546.0	f0_balb.idr	3' UTR (NM_025426, exon 3 of 3)	3' UTR (NM_025426, exon 3 of 3)	5125.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	3.13297945249894	3.20947632522954	2.97105790466793	3.01493906279886	3.28138562026102	3.22316643875588	0.288812515238745	0.665256665780831	0.907762144972922
Merged-chr7-100663403-4	chr7	100662870	100663870	+	996.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013746)	promoter-TSS (NM_013746)	-976.0	NM_001163182	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	2.56963781517269	2.49972386408363	2.83749462508011	2.50011351438355	2.84982050917272	2.47264355701816	-0.0879735470626279	0.915948335848795	1
Merged-chr18-32173107-3	chr18	32172621	32173621	+	746.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	10032.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	3.80969457095354	4.12241359532303	4.03848662934123	4.16575973099629	3.98489074834967	4.05938004681976	0.214819988343395	0.667757966645778	0.908813236401378
Merged-chr2-164856893-2	chr2	164856393	164857393	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011125, exon 2 of 16)	exon (NM_011125, exon 2 of 16)	815.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	6.27152937727979	6.34875822789933	6.3248843451012	6.26503584098076	6.51273434819598	6.03937123840328	-0.0210628949852392	0.942684574696213	0.987202156853573
Merged-chr3-145692269-4	chr3	145691745	145692745	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42260.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	6.08539985109634	6.45487258535467	6.46742732981997	6.16108581440358	6.39171124182667	6.43850529871478	-0.0150245489942453	0.95932189479446	0.990174309444982
Merged-chr1-37586314-4	chr1	37585835	37586835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45319.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	6.86135882217577	6.76595274544615	6.90726471429601	6.76443220748858	6.80407325067337	6.86646080472865	-0.050596739931913	0.837396310865009	0.962133986386607
Merged-chr11-80172773-2	chr11	80172265	80173265	+	871.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11107.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	7.23351407382891	6.84395751227249	7.00834106924709	6.94446586211926	7.17934582370193	6.95628611775283	-0.00423126095159259	0.98710031424458	0.997161899445921
Merged-chr5-139468637-2	chr5	139468137	139469137	+	592.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-8103.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	1.94384087153725	1.98353391969305	2.14800025982879	1.93335185433869	1.78337803168686	1.95851920330407	-1.14067696630783	0.246552525904461	1
Merged-chr11-118353767-4	chr11	118353254	118354254	+	985.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1657.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.33814916029987	5.26165294935251	5.72059990890146	4.95228180721457	5.01220760540691	5.07575222089604	-0.878751586951137	0.0183862666552176	0.152941212821122
Merged-chr6-113077308-4	chr6	113076796	113077796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	-52.0	NR_027008	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	8.16311088951668	8.01026885444237	8.17000874617385	8.13459757615967	8.13418004695536	8.09768749640542	0.0119678701271936	0.954040216790948	0.989495550016789
Merged-chr18-34378595-3	chr18	34378097	34379097	+	916.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5182.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	5.48066630495822	5.72561369838931	5.76285211576846	5.2793160198128	5.56475773625039	5.38390505045898	-0.445024154081462	0.190889408525294	0.577428967011753
Merged-chr11-49203411-4	chr11	49202901	49203901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-99.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	8.78465577109105	9.14594720115072	8.7227193423286	8.82813727429549	9.07688593215303	8.76831871408539	-0.00107849944069914	0.996278320780668	0.998961028701257
Merged-chr9-45478234-3	chr9	45477724	45478724	+	819.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-46992.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	2.77513754077303	2.87894918188107	2.94322361484896	3.14229761240915	3.14824894610073	3.30293754209107	1.56352458310119	0.0230317311673223	0.177411230015354
Merged-chr5-135582574-4	chr5	135582080	135583080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB8|LINE|L1	-9531.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	6.98344289024987	6.66445675557348	6.43068302107599	5.89004972237548	6.36953497322302	6.13936534497463	-0.915510575596085	0.00379161537621035	0.0499749732853547
Merged-chr10-96901324-4	chr10	96900807	96901807	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-134461.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	3.60883122460065	3.5419971476553	3.79513785888309	3.37782421563436	3.46286389574903	3.61669743808886	-0.580495711332709	0.31233640469491	0.707122889610482
Merged-chr10-60277062-2	chr10	60276562	60277562	+	653.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	-566.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	5.10180214309131	4.93100647014849	5.50413949218984	5.5273086107087	5.25502204629217	5.59239986427627	0.539689270225905	0.156948082748567	0.527816433819287
Merged-chr11-32534132-4	chr11	32533638	32534638	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	872.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.06198068731488	7.37365871751366	7.19276870083309	7.34989000497865	7.28492005975129	6.89777061342527	-0.024602144152413	0.925583978110117	0.983230173300268
Merged-chr4-144903317-2	chr4	144902817	144903817	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	10180.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.35422637263496	5.22825300307982	5.89006726953313	5.27428630844211	5.2286557489479	5.62627328925236	-0.253478384320013	0.514073429415498	0.842928757124913
Merged-chr9-7270229-3	chr9	7269709	7270709	+	752.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2305.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	2.75105128491905	2.64185219318489	2.88202486546919	2.48419861877799	2.34577261535689	2.52813464217636	-1.91813466981769	0.0213956039739622	1
Merged-chr13-9092908-2	chr13	9092408	9093408	+	781.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-973.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.63610754928392	3.6722502326242	3.86449894559077	3.57630168780821	3.80626120292945	3.78672318982613	0.0232194263607973	0.965995833744255	0.992205670092482
Merged-chr15-59724020-2	chr15	59723520	59724520	+	602.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	70939.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.83227953746528	2.53965896547623	3.12444422701901	2.76182072238229	2.66810571828632	3.03238385909037	-0.116205542076441	0.88326602731243	0.973347392063704
Merged-chr10-25268680-4	chr10	25268202	25269202	+	993.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018747, intron 4 of 7)	intron (NM_018747, intron 4 of 7)	30461.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.77690385458299	3.80079927540883	3.88277603743498	3.82775969257843	3.84728906847871	3.74828724889316	-0.0184228097238794	0.971603392384114	0.99377981119604
Merged-chr1-53791821-4	chr1	53791324	53792324	+	842.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6609.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	4.16585872497255	4.00115050694634	4.05926502646622	3.98358255970673	3.61742618014605	4.1275184911813	-0.483510708453376	0.362336270163238	0.74782499303743
Merged-chr16-36666565-2	chr16	36666065	36667065	+	800.833374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	-488.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	5.01755073130091	4.92990559539879	4.8041340806915	5.43642079262171	5.1721108852461	5.09912227420254	0.670274013707427	0.074791463408321	0.360011196085552
Merged-chr7-38002269-3	chr7	38001779	38002779	+	640.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17273.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	4.13044086981163	4.41169660155888	4.25118296279926	4.08072900366693	3.78141638777414	4.18439803866804	-0.728526457123706	0.146313360368601	0.510202082371576
Merged-chr5-122146497-4	chr5	122146010	122147010	+	994.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8448.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	5.90284693057631	6.01150119116746	6.12829295188887	6.03454477948243	5.90999272387277	6.16767227671382	0.0371242559269601	0.900374069317183	0.976732664429607
Merged-chr14-120762395-4	chr14	120761833	120762833	+	977.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-148861.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	6.97413979650595	7.31243375416156	6.91972125398297	6.52478791391672	6.75586472788247	6.02725287781754	-0.928696582141177	0.0035195586033672	0.0473569586463418
Merged-chr18-38409968-4	chr18	38409418	38410418	+	869.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8989.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.57196565367398	4.67456194837414	4.67247234731118	4.39523481966378	4.36935230288049	4.53969543575828	-0.519313026787077	0.218308686006337	0.612458824761069
Merged-chr19-9974030-2	chr19	9973530	9974530	+	629.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-6570.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	4.04043595447197	3.85323890025163	3.9912519277301	4.06067833293923	3.97884189141352	3.85821700998234	0.0294921296025816	0.953153658441695	0.989359300570295
Merged-chr10-40137383-2	chr10	40136883	40137883	+	565.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4871.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	5.33844277576185	5.58041523071084	5.26232172971674	5.63963908791506	5.84545250541079	5.66073277889402	0.588447401299807	0.0798352845592374	0.373618355320868
Merged-chr9-59295466-4	chr9	59294958	59295958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	3886.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	5.92663277962122	5.62265927520377	5.98978638785847	6.05341800617206	5.8315675197971	6.02826073502802	0.212711033527002	0.498366314430822	0.833865667012175
Merged-chr7-118849712-1	chr7	118849212	118850212	+	640.0	f1_c57bl6.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	5901.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.66486739633822	3.59816763533801	3.68935434170354	3.84110091377187	3.42204962889153	3.90703430472076	0.278770108018045	0.627628187757643	0.893330206932885
Merged-chr8-122879592-2	chr8	122879092	122880092	+	772.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31218.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.38727791261513	3.0881770277024	3.5285865114639	3.42638457285507	3.51801288881603	3.49345438182259	0.530465551079317	0.393342322718934	0.771515439837752
Merged-chr15-59375062-4	chr15	59374593	59375593	+	694.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153548)	promoter-TSS (NM_153548)	895.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	6.32433235607805	6.45942924645136	5.9477185434935	6.22014093032531	6.22537651070392	5.5466837687639	-0.372712997012356	0.292449704896616	0.689679830251773
Merged-chr5-137831714-4	chr5	137831216	137832216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153510, intron 2 of 6)	MLTR14|LTR|ERV1	4562.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	5.3785792151563	5.32251395172993	5.85081566350107	5.56227722076525	5.53654360399674	6.03899244703737	0.364597339758947	0.325680632352555	0.71817845131019
Merged-chr2-153633417-1	chr2	153632917	153633917	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	-636.0	NM_133850	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	4.38272252579239	4.43477221063051	4.2798428709032	4.25706622237195	4.17324712059988	4.34770127959969	-0.313349938631927	0.486293005296585	0.827761560966353
Merged-chr16-21695500-4	chr16	21695068	21696068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-903.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.67309972645599	6.07175092087375	6.60474582001719	6.14950708757443	5.82751580845856	5.89214243410229	-0.855973218693665	0.00889105941881941	0.092783691768643
Merged-chr8-67957060-3	chr8	67956580	67957580	+	786.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17494.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	4.41533876343722	4.70180938545405	4.36051956578174	4.04669009151938	4.38424220036592	4.29221799582794	-0.659354472609678	0.161746704374093	0.534878776629821
Merged-chr11-75585307-4	chr11	75584803	75585803	+	909.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2776.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.24774867796652	5.2267481903971	5.05836131967463	5.12590689342848	5.23239478671468	5.19223562581809	-0.00291859163642396	0.993430536191146	0.998651348330892
Merged-chr4-46123785-2	chr4	46123285	46124285	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355375, intron 6 of 9)	intron (NM_001355375, intron 6 of 9)	14690.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	3.91054887978486	4.33323138284255	4.15668645413184	3.91532821962465	3.61081915919895	3.72635311056961	-1.20978267454884	0.0250187680713077	0.187057386438797
Merged-chr8-117371442-4	chr8	117370927	117371927	+	856.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	22257.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.22158704456088	3.30107558561753	3.69578044821848	3.23544110290913	3.1022118201872	3.0028412379043	-1.2156521476737	0.0725728400248431	0.353964442613174
Merged-chr5-65881244-4	chr5	65880711	65881711	+	593.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17642.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.1263058079977	4.82857118736234	5.29406138746232	5.29131944679993	4.93139621945284	5.35681885668469	0.225838121775484	0.567715956991426	0.868275146573708
Merged-chr9-66919769-4	chr9	66919293	66920293	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173413)	promoter-TSS (NM_173413)	-88.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	7.01792753462445	6.93911669000298	7.03250427541531	6.68425140212078	6.74442208161256	6.88785385831283	-0.348186749652833	0.157681919063882	0.529176297550516
Merged-chr11-3198742-7	chr11	3198361	3199361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-3492.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	6.06800577397009	6.84058877081211	6.75972834327554	6.64478316088128	6.39763011385396	7.26955657421084	0.342965803489994	0.353103091340603	0.740466669293519
Merged-chr6-121077357-4	chr6	121076817	121077817	+	823.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	4310.0	NM_153396	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.59604505879037	3.45675547092098	3.39530470472082	3.59828928104543	3.21134287340004	3.4101864086944	-0.280725328768907	0.645743085806303	0.900721425246251
Merged-chr11-25358269-1	chr11	25357769	25358769	+	789.0	f0_balb.idr	intron (NR_045853, intron 5 of 7)	intron (NR_045853, intron 5 of 7)	32162.0	NR_045853	71234.0	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA	2.0883620506431	2.06802471323842	2.23316612478802	2.52939986389034	2.29375169099436	2.44175311862561	2.20569584201687	0.0179959988731812	1
Merged-chr10-94992277-4	chr10	94991710	94992710	+	802.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47632.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	2.43446394719655	2.69622745806835	2.65510616878704	2.57722358533195	2.4829328891712	2.4049527621376	-0.634041009472559	0.433460923248501	1
Merged-chr2-152227365-1	chr2	152226865	152227865	+	1000.0	f0_c57.idr	intron (NM_007788, intron 1 of 12)	CpG	525.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	6.80122617945055	6.72565427381375	6.99830615083458	6.69209333238752	6.65441930225255	6.88187581169093	-0.156002004437083	0.547324473798183	0.859266262227511
Merged-chr8-84909519-2	chr8	84909019	84910019	+	859.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010062, intron 3 of 5)	intron (NM_010062, intron 3 of 5)	895.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	8.14150513179814	8.28653437153087	7.63321642368462	7.88488805703149	8.21301477473205	7.22720796550597	-0.292714395535989	0.368934341255835	0.753776179030975
Merged-chr18-53258738-2	chr18	53258238	53259238	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	13076.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	3.65803637853117	3.64552244236518	3.79242590346011	3.75278706119629	3.73546829179113	3.95704473082085	0.385110953024504	0.469656734493332	0.819030003012138
Merged-chr15-66103570-4	chr15	66103052	66104052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-126748.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	2.68083533118668	2.6408600859911	2.68254017427193	2.8081826390645	2.67445133941917	2.81745906129546	0.525930972742854	0.472286924739342	1
Merged-chr1-82840158-3	chr1	82839657	82840657	+	842.7999880000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310713, intron 1 of 11)	CpG	697.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	6.11661756227322	5.62507880436689	5.86178686043834	6.07678164960971	5.46784307197828	5.54371008623973	-0.280836505228002	0.442944691864754	0.803447385622969
Merged-chr10-8887337-3	chr10	8886811	8887811	+	701.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-1241.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	6.69015393078444	6.63226805678121	6.32644338580835	6.17390485261192	6.1976229419462	5.76221338360657	-0.813355714880097	0.00799442990060414	0.0860432703621096
Merged-chr15-6568005-4	chr15	6567505	6568505	+	991.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-11842.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.86026318735383	6.8636054898703	7.11353464770983	6.96547810907728	7.05793041958928	7.37137669624705	0.292081919646982	0.264493167364375	0.662371259557422
Merged-chr8-47947762-3	chr8	47947256	47948256	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42795.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.17188590247275	3.94375468633598	4.68425432885146	4.2648206368751	4.33080986996323	4.56750331426739	0.250338468208636	0.62530430994958	0.89246806537449
Merged-chr5-102072830-2	chr5	102072330	102073330	+	547.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2909.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.96195882425304	5.12238293886226	5.26984721720402	5.28551450595119	5.44889119477112	5.13672718502492	0.388993402502814	0.2858342244945	0.683262781227222
Merged-chr4-46172085-3	chr4	46171594	46172594	+	772.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001033201, exon 23 of 23)	3' UTR (NM_001033201, exon 23 of 23)	24217.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	2.79565725927779	2.75329749272291	2.86944986866247	3.01129380575391	2.70359414333588	3.05975016641913	0.612082133329194	0.397355353669552	0.774221853837632
Merged-chr12-100396867-4	chr12	100396370	100397370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120261.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	4.84313604674736	4.75969247608666	4.72349759604042	4.89956177698051	4.69783896153206	4.90279123973306	0.114879548442904	0.770564104715146	0.943392092118189
Merged-chr3-27188398-4	chr3	27187903	27188903	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	5399.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	6.95980330945062	6.97760004163279	6.71220336141971	6.65746893079193	6.76431787574539	6.11465114455677	-0.52536552507595	0.081934225101857	0.378679448943503
Merged-chr9-70891578-3	chr9	70891074	70892074	+	791.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	43234.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	3.54273561615906	3.52640920079367	3.70628297874165	3.71469298299548	3.16787489375977	3.40021414055451	-0.522894800577223	0.402945231181945	0.778365878954155
Merged-chr2-101777008-2	chr2	101776500	101777500	+	941.166626	f0_c57.idr|f1_c57bl6.idr	intron (NM_001355625, intron 1 of 8)	MIRb|SINE|MIR	20707.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.12526222162591	3.34625378061798	3.30282954775606	4.27973688779135	3.91660763206026	4.03901602924679	3.05891636913631	2.60250574598778e-06	0.000125754528520413
Merged-chr4-43420599-3	chr4	43420118	43421118	+	874.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8516.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	6.50788092947055	6.38315440040667	6.00611125790275	5.88427672315186	6.05843445430494	6.02004601967701	-0.568939493249448	0.0622899172353002	0.324283265551827
Merged-chr11-69998250-4	chr11	69997728	69998728	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291125, intron 3 of 4)	intron (NM_001291125, intron 3 of 4)	766.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	6.5688843899749	6.20794692821288	6.30229506507567	6.57107967577768	6.93981675378607	6.53464289503548	0.53365645377291	0.0689960388617838	0.34365573288091
Merged-chr4-150213298-2	chr4	150212805	150213805	+	725.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19|LTR|ERVK	-12170.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	6.84511472461532	7.18333078249265	6.93471179697726	6.87638910212982	7.43653372687526	6.79694392834202	0.128231003365382	0.666951264119972	0.908463623849139
Merged-chr16-91547556-4	chr16	91547054	91548054	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	460.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	8.78180193067076	8.65580490168411	8.54993813728785	8.86293082135823	9.06976063993457	8.60508331296419	0.271423299631237	0.229075282477918	0.624558344127349
Merged-chr19-53653923-4	chr19	53653416	53654416	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23390.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	3.38689314530801	3.18883872993166	3.21495943288775	3.39663938900081	3.45037322033585	3.56561036384208	0.779978037078386	0.199649518479857	0.588238275332742
Merged-chr13-117222086-3	chr13	117221580	117222580	+	731.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	1507.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	2.44365243009524	2.56327480375756	2.68561464557954	2.40722909408439	2.50937134148401	2.44658557744502	-0.642251006246095	0.423667808980066	1
Merged-chr3-51199062-2	chr3	51198562	51199562	+	781.928589	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-25385.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.35296908060298	3.42767996661682	3.62918144004331	3.38250994943259	2.92069528620698	3.69835681406453	-0.368070257563502	0.602527483834985	0.882349532183277
Merged-chr8-80961384-4	chr8	80960837	80961837	+	891.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	53569.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.41137136917417	4.30137184038274	4.60532385257296	4.1566207839024	3.77171901220613	4.31301199780657	-0.962210839417357	0.0566332332388573	0.306852775368811
Merged-chr11-70434603-4	chr11	70434111	70435111	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	2031.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	7.68603069680896	7.20705408362907	7.65840113254597	7.76276327511591	7.99516245182046	7.82632155219336	0.484392397978371	0.055276198787081	0.302176069159414
Merged-chr16-5049258-3	chr16	5048750	5049750	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	660.0	NM_001359747	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	8.33436475175297	8.84882341385503	8.26945388789526	8.27918673243471	8.6375344472159	8.19932392689273	-0.174127977637969	0.512685623231527	0.84208176908739
Merged-chr12-100883377-4	chr12	100882874	100883874	+	974.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	16150.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	4.33555936306434	3.65848796866123	3.84254480479717	3.88371306754429	3.84406829748049	3.80736402873674	-0.422787212058824	0.455172768812688	0.810850494494982
Merged-chr1-45926232-1	chr1	45925732	45926732	+	586.0	f0_balb.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	-638.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	6.23720617494525	6.62048833217138	6.64481448188136	6.25742182435838	6.31925591911333	5.95561099314864	-0.513285633964165	0.0906799978668898	0.400621283981532
Merged-chr14-50925644-4	chr14	50925102	50926102	+	793.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	653.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	7.5657860684132	7.93307693267624	7.68639429334487	7.96102306312714	8.39123923042784	7.61843485113544	0.42728671576518	0.129609827450926	0.481622840280538
Merged-chr7-25713414-2	chr7	25712914	25713914	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028771, intron 4 of 4)	intron (NM_028771, intron 4 of 4)	5639.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	2.54580407734238	2.67844244139036	3.00915544595533	2.60271996599427	2.50439133733184	2.79806207908673	-0.628655006578024	0.428056915603387	0.794861857476604
Merged-chr10-50705111-1	chr10	50704611	50705611	+	864.0	f0_balb.idr	intron (NM_198007, intron 16 of 41)	intron (NM_198007, intron 16 of 41)	112442.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	3.4733333665366	3.70139921634914	3.91553374657352	3.65021652239121	3.3495304697136	3.89204739488252	-0.208569828267478	0.729797744936571	0.930635866770147
Merged-chr2-181289241-4	chr2	181288746	181289746	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-1280.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	7.96353558111029	8.13292086666086	8.00097623860533	8.34449350006642	8.69863598023498	8.20573132798591	0.567958985625602	0.0163339894031883	0.140917677124219
Merged-chr1-64448199-4	chr1	64447698	64448698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84606.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.17328347503876	3.40819320270634	3.13781116903379	3.14320500014304	3.08441603943699	3.21035487567293	-0.453365176718329	0.481672369512546	0.825175087953553
Merged-chr9-102982610-4	chr9	102982114	102983114	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-25875.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	3.62577374705704	3.72379015774621	3.85230951443188	3.87931546628141	3.93374771191276	4.01666475903302	0.673002712463019	0.194898130311836	0.582591632483319
Merged-chr7-19281876-3	chr7	19281373	19282373	+	947.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-751.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	2.70177670243544	2.63133033344804	2.82257893008868	2.98746422225449	3.0388566498707	3.13176240939812	1.73243144850585	0.0172272890938393	0.146214917221829
Merged-chr10-68105416-4	chr10	68104902	68105902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023598, intron 8 of 9)	(T)n|Simple_repeat|Simple_repeat	125832.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	7.48033554001506	7.30141623457453	7.14083094935812	6.97435487714994	6.90722914701498	6.88370057696713	-0.600827147810934	0.0144698736940744	0.129480799714849
Merged-chr11-46846141-3	chr11	46845634	46846634	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35335.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.11109072344763	5.01666587679913	5.37775226549789	4.8800194944433	4.65334264774967	4.90104140359735	-0.782494150689813	0.0453018019468651	0.268672297676034
Merged-chr2-145825854-1	chr2	145825354	145826354	+	643.0	f0_balb.idr	intron (NM_028724, intron 4 of 12)	ID_B1|SINE|B4	39738.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	7.56224421536962	7.33317796208377	7.50710870769838	7.33825829048114	7.74170094376203	7.43069218148885	0.0778103660700945	0.753957264024942	0.938602852002384
Merged-chr1-136670701-4	chr1	136670307	136671307	+	792.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12589.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	5.40209674182647	5.59539286866485	5.38557022087238	5.44020382212977	5.49465440841959	5.5373695414859	0.0368665660005982	0.911271757098355	0.98004232415071
Merged-chr19-12782997-4	chr19	12782510	12783510	+	896.508301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053009, intron 2 of 10)	Lx6|LINE|L1	13113.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	5.16427109350364	5.32156903539965	5.24773738495864	5.03277928466734	5.41371856088022	5.48900563120416	0.1570867614815	0.666436267438919	0.908169488061867
Merged-chr2-158179158-4	chr2	158178666	158179666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12842.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	6.04534149985916	5.66528227272179	5.53735635961403	5.56465912473335	5.5689472547797	4.87081155918592	-0.719199152251084	0.0773272416934585	0.366769943956524
Merged-chr15-79882899-2	chr15	79882405	79883405	+	765.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9503.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	4.02682651741823	3.97325362999138	3.79656682747756	3.4606272285523	3.07782084992107	3.42534553367656	-2.34070879114163	0.00025867300301793	0.00617785971157172
Merged-chr3-108591303-4	chr3	108590784	108591784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358055)	promoter-TSS (NM_001358055)	6.0	NM_001358054	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	5.63390268042226	5.65879733394291	5.569690000061	5.41694240539194	5.42242512939272	5.60448620729053	-0.279414996182595	0.38676257159145	0.767209905576392
Merged-chr13-37453340-4	chr13	37452836	37453836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	107991.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.25143625179846	4.16781175774817	4.08495302533682	4.36210008509321	4.17030074132689	3.94908088788573	0.0118386681473962	0.980614283010318	0.995533891249771
Merged-chr17-34589963-4	chr17	34589416	34590416	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134116, exon 1 of 4)	5' UTR (NM_134116, exon 1 of 4)	110.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	6.10887601807602	6.15658905073201	6.54965834287495	6.70094181281767	6.46718746724097	6.7188594062712	0.575597516930292	0.0480326033680683	0.27785712326545
Merged-chr12-82225961-4	chr12	82225450	82226450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55934.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	7.26864541674138	7.36489808646866	6.91582011891358	7.20591718652325	7.35111782180113	7.29940125673914	0.119169389332934	0.637938780843861	0.897380718500389
Merged-chr5-53402953-4	chr5	53402424	53403424	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	135818.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	4.85417470797646	4.63860473915563	4.69796639935533	5.00857064021472	4.53986752685018	4.84160664218605	0.160264542517896	0.703343146751227	0.922108924938678
Merged-chr14-51278219-1	chr14	51277719	51278719	+	583.0	f1_balb.idr	Intergenic	Intergenic	-22107.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	4.10358940650545	3.99827062656647	4.05782696610415	3.62566293291819	3.3921271659829	3.98814237650932	-1.20518239673245	0.0353370065522395	0.230812594489265
Merged-chr7-25386289-4	chr7	25385773	25386773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_073028)	TTS (NR_073028)	3839.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	6.92906601975801	7.0127809467362	7.27045286018296	6.97414585852098	6.97975147382727	7.21586159138134	-0.0240682393177739	0.924850541199803	0.983070278897208
Merged-chr1-136134602-2	chr1	136134102	136135102	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3212.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	6.6116321182458	6.4075683488532	6.97583062210632	7.38950834195681	7.24837898885276	7.21979104865236	0.940287398425652	0.000564214728013754	0.0115447806573018
Merged-chr9-96504245-4	chr9	96503761	96504761	+	802.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER5A|DNA|hAT-Charlie	-25586.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.15992101203721	3.42594868086081	3.7563537004648	3.46246514564182	3.53138418338401	3.72969618433172	0.404115380751636	0.520213045622968	0.846270447128896
Merged-chr11-101009468-4	chr11	101008988	101009988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	36.0	NM_001243051	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	8.68016104647766	8.92778927322879	8.28907148481978	8.56692416360441	9.04233156102427	8.21563393832066	-0.00261643437513978	0.9929275197747	0.998616204527923
Merged-chr18-74213068-3	chr18	74212560	74213560	+	757.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR30E_MM|LTR|ERV1	-3152.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	4.29259481023838	4.61222441643579	4.91029789876857	4.35882132806472	4.36477203517766	4.66052702661	-0.38937852549654	0.403537042175401	0.778882003719199
Merged-chr5-149273378-2	chr5	149272878	149273878	+	783.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	8374.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.52487699395416	5.04346484917612	4.93875077618714	4.72981143581315	5.037696155768	5.19921803075306	0.316022871654891	0.458806952146554	0.813236440920954
Merged-chr12-16811499-1	chr12	16810999	16811999	+	563.0	f1_c57bl6.idr	intron (NM_033270, intron 1 of 6)	intron (NM_033270, intron 1 of 6)	534.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	5.08167553906097	5.40539728124174	5.24068052702582	4.95406956975082	4.47447865236601	4.77635298689083	-1.10336079573587	0.00669357930863484	0.0756327195970787
Merged-chr5-105345181-3	chr5	105344662	105345662	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_132129, intron 1 of 10)	intron (NR_132129, intron 1 of 10)	1310.0	NM_001039647	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	2.63960965588072	2.72444889010414	2.85865755911201	2.67010622553757	2.55624590641322	2.81326020522981	-0.334013520732951	0.656273199071743	0.904602840326388
Merged-chr16-85800828-3	chr16	85800333	85801333	+	816.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	2280.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	3.97218940617672	3.77737018755945	3.39690394067806	3.19368223161077	3.06073747240682	3.28809399290523	-2.28333173484911	0.000625271001563254	0.0125186596482375
Merged-chr13-103924286-4	chr13	103923778	103924778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3692.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.74082429010508	5.43373163002772	5.25919901140573	5.56749788150553	5.55381534704807	5.7349193912462	0.208518038439706	0.547037657717932	0.859168905101902
Merged-chr7-4501014-4	chr7	4500516	4501516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	664.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	8.36340911029978	8.23242807502302	7.98702348297248	8.2291426151519	8.3806122099878	8.17297230908706	0.0812558669240171	0.717721680474702	0.927159311757732
Merged-chr1-130430011-6	chr1	130429504	130430504	+	865.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151525, intron 2 of 3)	RLTR13D5|LTR|ERVK	-6961.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	4.46155591580197	4.62610980068926	4.16189732396976	4.84357338334884	4.70161844662238	4.73244135426249	0.757422381293921	0.0891349919034041	0.396669258680404
Merged-chr10-67282005-2	chr10	67281505	67282505	+	598.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	3276.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.97008861031792	3.11018693978638	3.04389814035177	2.95294888360509	2.89444228711475	3.05738692252131	-0.363502739474135	0.588512970502621	0.876512265511242
Merged-chr17-34092801-4	chr17	34092294	34093294	+	981.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	415.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	4.14671561312729	3.83777771624734	4.06205090806013	4.64124938617275	4.63993140137016	4.37327875087871	1.4652977558986	0.00207414562751109	0.0318012731479533
Merged-chr9-107567021-4	chr9	107566601	107567601	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019742)	TTS (NM_019742)	-2062.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	3.79379292106298	3.82568894778576	4.23749647976287	3.79236764994736	3.50910634543408	4.41884345332397	-0.00739594622178318	0.990415914775054	0.997875274702766
Merged-chr2-126682452-4	chr2	126681942	126682942	+	939.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6105.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	5.19347542342053	5.22360466488284	5.57904542179341	5.5156570151116	5.67467716003866	5.90614361903257	0.706921339173233	0.043413519641173	0.26182156572463
Merged-chr2-181537837-4	chr2	181537338	181538338	+	929.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	17353.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	5.88889634867611	6.03975184321986	5.99277532170024	5.8038593026345	5.98289608573774	5.78604391646711	-0.186776841936386	0.534584688028041	0.853068627162717
Merged-chr11-54902865-4	chr11	54902364	54903364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001329860)	promoter-TSS (NM_001329860)	10.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	3.34854892880415	3.60429890805765	3.49609100796599	3.23662952492079	3.45673288649894	3.45840816770426	-0.373298569014497	0.535728681349421	0.853668337370661
Merged-chr4-107252850-1	chr4	107252350	107253350	+	710.0	f0_balb.idr	promoter-TSS (NM_001355460)	promoter-TSS (NM_001355460)	683.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	4.53684945918643	4.54682861596888	4.5567811238473	4.58603555651595	4.41650630840764	4.2165690709414	-0.312145469471934	0.477478292344032	0.823237639056184
Merged-chr10-14173560-3	chr10	14173028	14174028	+	723.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx2B2|LINE|L1	207149.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.24259283487378	3.95702028216118	4.04180625997235	4.36623507594093	4.54545049195919	4.35002482756507	0.920980632165993	0.0508681122469216	0.287250348411391
Merged-chr2-59396226-2	chr2	59395726	59396726	+	692.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9544.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.78878893589077	5.75516352274861	6.03180844097009	5.70299191691228	5.42462809770604	5.66604136843409	-0.475619755424075	0.141988290293282	0.503045315568694
Merged-chr1-54928224-2	chr1	54927724	54928724	+	566.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1837.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	2.8803907598233	2.74210312629502	2.9034269533138	2.55901453139482	2.41750495544143	2.67404555521161	-1.72933183593264	0.0312576411253106	0.214053911440022
Merged-chr18-46575555-8	chr18	46574967	46575967	+	863.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173394)	promoter-TSS (NM_173394)	-934.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	5.95582310019396	6.21995419246295	6.207940892657	6.00247659400435	6.38056787297398	6.18570907323154	0.126620026555759	0.674241406952405	0.911841916826811
Merged-chr13-24762011-4	chr13	24761511	24762511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020567)	promoter-TSS (NM_020567)	-74.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	7.11514749416599	7.03996861277896	7.22263702562343	7.03643280432352	7.39819746014441	7.06996100805389	0.0962126728729635	0.704429064547617	0.922410722571361
Merged-chr5-29435204-3	chr5	29434707	29435707	+	898.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	540.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	7.18463572861465	7.59149478198701	7.30449163884204	7.19752375228556	7.06869072140594	7.17377437116709	-0.343875820139408	0.170020965845292	0.547289560416266
Merged-chr11-98801615-3	chr11	98801113	98802113	+	972.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001361932)	TTS (NM_001361932)	2959.0	NM_001361934	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	4.26173971026637	4.77003657456863	4.8872399748118	4.6661192308698	4.64570137983103	4.6971497239788	0.0170115060229396	0.9697687494248	0.993210926740941
Merged-chr5-123024781-3	chr5	123024297	123025297	+	841.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175423, intron 1 of 1)	B1_Mm|SINE|Alu	9723.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	6.1485236397847	6.39409209311194	6.63874109381512	6.14348032264831	6.34637247072846	6.71227440582406	0.0212691500364076	0.946205582648135	0.98796006280508
Merged-chr5-101997523-4	chr5	101997037	101998037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	72384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.51949975479447	6.52861843445404	6.05923203284163	6.5228676032007	6.40998840190341	6.16766058365171	-0.0292677270932445	0.922898896980996	0.982621045978137
Merged-chr2-73513449-4	chr2	73512960	73513960	+	933.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	16027.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.61214701909049	5.3697306075617	6.00008736439822	5.88929300521322	5.45828414684758	5.63195681803017	-0.00977770044718959	0.978610179954179	0.995160277495735
Merged-chr18-50053423-4	chr18	50052912	50053912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134131, exon 1 of 2)	5' UTR (NM_134131, exon 1 of 2)	130.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	7.5001081756357	7.73731924942326	7.53895486171852	7.42440142391716	7.55035812805825	7.38817124909241	-0.202673454789086	0.379893727884008	0.76216900491326
Merged-chr2-160603452-3	chr2	160602922	160603922	+	745.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42475.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.20960554154307	3.88209485628377	4.28473355957969	4.16992368345023	4.04435490943126	4.17577828902881	-0.00742822148547628	0.987984140579398	0.997268471577753
Merged-chr13-44996487-4	chr13	44995983	44996983	+	840.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5613.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.02813425525251	4.94048028407491	4.89775741276439	5.37905015844906	5.3362300706794	5.00280815535606	0.624898366049979	0.0933158909891705	0.406908534609941
Merged-chr6-82808192-4	chr6	82807696	82808696	+	869.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33742.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.58787013007254	4.45835952296756	4.86149371032578	4.9548282016606	4.61067482142881	4.53544210608649	0.187248133511928	0.668209986962919	0.909010294561388
Merged-chr15-100312590-2	chr15	100312090	100313090	+	869.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	7773.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	4.19327817105766	4.22041667323781	4.18908194389917	4.35017817560438	4.46768327601716	4.47674904002662	0.615699188536938	0.167287211775228	0.542950981682456
Merged-chr14-73170992-2	chr14	73170492	73171492	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	28207.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	5.53762750509502	5.2595447228677	5.87988452175263	5.28638260337441	5.0712290417843	5.44651255485056	-0.594402583424115	0.116094850069298	0.455026613442228
Merged-chr18-60750703-4	chr18	60750234	60751234	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2069.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	6.35094393459339	5.86040101683482	5.88517968091295	5.5626626362264	5.45616181094465	5.57424676138551	-0.957878846341743	0.00410897285078208	0.0530076609252519
Merged-chr17-70992570-3	chr17	70992073	70993073	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2057.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	7.38213914018133	7.32718029887535	7.31060388967408	6.78610050582773	6.72199720261892	6.81371355863631	-0.866980875613602	0.000239468920844801	0.00579236336210879
Merged-chr17-5445588-4	chr17	5445098	5446098	+	983.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5338.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	3.87257232753596	3.71116387140178	3.46849684197245	3.68837043190446	3.29958947175726	3.65329120634092	-0.506428351424858	0.401409505350467	0.777532931098579
Merged-chr19-3899138-4	chr19	3898644	3899644	+	961.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001136091, intron 10 of 19)	intron (NM_001136091, intron 10 of 19)	6086.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	4.22061826740154	4.2065299127771	4.26824229825235	4.40945698649352	4.45601581763915	4.62644262960201	0.693636002911198	0.117311845142984	0.457331522238446
Merged-chr1-37559845-4	chr1	37559339	37560339	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18823.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	5.05516871866661	5.18304376227394	5.52639085861362	5.38474800768847	5.63660952085816	5.38867278719522	0.444197767159757	0.220706558098899	0.615289686946534
Merged-chr14-32087880-1	chr14	32087380	32088380	+	662.0	f1_balb.idr	intron (NM_145460, intron 1 of 7)	B2_Mm1a|SINE|B2	2152.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	2.07782723310561	2.17822591185858	2.40286754042245	2.43640154534542	2.32713728251057	2.47746048308715	1.30820422933222	0.142560601958552	1
Merged-chr11-106741919-2	chr11	106741419	106742419	+	821.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-9307.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	6.46514901725329	5.93372095451736	6.24420151838189	6.20544663076413	6.18368163819991	6.41781486454267	0.0565115209365855	0.854641264700943	0.965987623019113
Merged-chr3-96758810-2	chr3	96758310	96759310	+	788.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	31199.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	5.11200253458571	5.39371465594661	5.43923645475507	5.51799436762897	5.4270315618649	5.5580538673128	0.351182163994175	0.30695508092443	0.703099001056797
Merged-chr3-84869169-2	chr3	84868669	84869669	+	806.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	5024.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	3.44604176762862	3.35843997714294	3.36996802152492	3.21356850423295	3.32878689690833	3.32872870196347	-0.400719062172135	0.50629578235425	0.838365362350894
Merged-chr11-121805800-2	chr11	121805300	121806300	+	920.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24418.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	3.83948650069117	3.55681538476998	3.77052532514175	3.40202885580111	3.71010234168893	3.68765374905248	-0.397347614851021	0.488154579412247	0.82896316748779
Merged-chr16-30388840-4	chr16	30388350	30389350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-320.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	8.52788083826206	8.36638781037726	8.27316186293653	8.52327039863423	8.52770709687287	8.29709170008471	0.0849034028647129	0.692645815210905	0.91870248759071
Merged-chr11-103383749-4	chr11	103383244	103384244	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 5 of 11)	L2a|LINE|L2	-20052.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	7.5525221543266	7.22579989009369	7.32008119170209	7.21985367758864	7.30803436539589	7.16421844451246	-0.207515894973216	0.392189041509231	0.770943461123581
Merged-chr2-151575732-3	chr2	151575247	151576247	+	853.56665	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	3124.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	5.54636321693789	5.85970966123773	6.13599371390866	5.84670224591263	5.99777682703825	5.81530049802875	0.0631456341038927	0.849021342697875	0.964516084691952
Merged-chr2-78050736-3	chr2	78050260	78051260	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_108098)	promoter-TSS (NR_108098)	-417.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	2.38215171152898	2.44010038981148	2.58879707209596	2.25245337490101	2.20875206209263	2.47841833237955	-1.03357522914921	0.227466902361411	1
Merged-chr13-107763851-2	chr13	107763351	107764351	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	76454.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	5.25810862683434	5.07656425796172	5.09837385583732	5.68386166508903	5.45950662124147	5.33358592344816	0.701776516177234	0.0465237832024492	0.272937080731223
Merged-chr9-59547265-4	chr9	59546763	59547763	+	866.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	7723.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	5.64175966305743	6.04652158210006	6.24808491246263	6.06460013461724	6.07647264586477	6.10661351643413	0.152124470240222	0.635208323853334	0.896439353901449
Merged-chr17-25240033-6	chr17	25239519	25240519	+	988.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163718)	promoter-TSS (NM_001163718)	97.0	NM_172529	214505.0	Mm.38607	NM_172529	ENSMUSG00000035521	Gnptg	6430527N14Rik|A830081F19|AU067667|AU067744|Mdcp1|Tce7	N-acetylglucosamine-1-phosphotransferase, gamma subunit	protein-coding	5.75860748506845	5.95470439907991	6.15678344841504	5.36053289402388	5.50817009738818	5.50565165179307	-0.912690752944863	0.00534899557216087	0.0641232133076446
Merged-chr5-21017323-4	chr5	21016827	21017827	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 4 of 17)	Lx5|LINE|L1	17920.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.57232834755513	4.26531051311706	4.47878068675863	4.24498378448555	3.87020790761161	4.33611718229456	-0.778316226102807	0.112561496949588	0.448241038651517
Merged-chr4-6370301-1	chr4	6369801	6370801	+	816.333313	f1_balb.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4621.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.02450275650701	7.20881643262369	7.16376282757124	7.0699345698129	7.16846458690255	6.83895593468716	-0.138210807624332	0.580498150740673	0.872884157869997
Merged-chr10-95510181-4	chr10	95509686	95510686	+	807.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-4976.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	5.72990529110713	5.59844086576825	5.71887080513419	5.75057228931012	5.8774407211742	6.10339346503776	0.4133687893543	0.187490210982848	0.572544240878627
Merged-chr6-43848041-3	chr6	43847515	43848515	+	775.138916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-181737.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	4.73432758558922	4.84274763566139	5.26295741017919	4.35991397624271	3.9993390745156	4.39174371422343	-1.74350638183894	0.000211677300221664	0.00524047747600244
Merged-chr3-83859254-4	chr3	83858756	83859756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17648.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	4.34980347022158	4.33867552790104	4.41676927294316	4.51846686739249	4.10504938202556	4.21456341134718	-0.202933623846163	0.66267072526887	0.906804932599005
Merged-chr6-88034569-3	chr6	88034069	88035069	+	908.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	10448.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	5.40740783944337	5.10497059709438	5.53026442072342	5.43876916765184	4.91719718771911	5.5115912326873	-0.0952957518197088	0.809283050935995	0.954721853010197
Merged-chr6-13681042-3	chr6	13680538	13681538	+	706.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3072.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	2.87674154051995	3.20161481294804	3.19815245127348	3.08662648325196	2.88858717297897	3.47862214419199	0.295213529680486	0.680772202147709	0.914453707211828
Merged-chr11-16509594-2	chr11	16509094	16510094	+	675.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1110.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	2.72607129580289	2.51904312118331	2.86644815681355	2.52091304099327	2.50758474804288	2.76378220780819	-0.607157656127136	0.440533735202429	0.801871784087343
Merged-chr4-133599910-4	chr4	133599454	133600454	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_018754)	TTS (NM_018754)	2214.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	4.73173794519603	4.70585133044508	4.83263722171513	4.24383055648271	4.16784960915736	4.38723425185618	-1.25270666142942	0.00384950037043099	0.0504662402430789
Merged-chr1-54920294-4	chr1	54919791	54920791	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	6096.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.27120108102732	3.94737404613461	3.81631136537241	3.85032207336847	3.89539656762439	4.26802916792258	-0.0653421145970323	0.903163805820253	0.977756599430303
Merged-chr4-138013924-1	chr4	138013424	138014424	+	629.0	f0_balb.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16099.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	4.98695332134887	4.8241535733545	4.99651228060488	4.37682673950076	4.18273528487947	4.35884067944574	-1.55722390458245	0.000263509779231604	0.0062789581071888
Merged-chr11-67966441-4	chr11	67965948	67966948	+	981.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	-10.0	NM_001361352	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	5.78296599700781	6.24549169259537	5.86077092945622	6.37233381870598	6.31346928253747	5.998204576732	0.436846559431824	0.173491276803506	0.552378593413412
Merged-chr17-42909589-4	chr17	42909083	42910083	+	927.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33159.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	4.11469122035406	4.10596232844423	4.34082223081318	5.6124087115376	5.60070853284698	5.7090198535291	3.43253777036492	1.78536205494563e-15	5.30558592385413e-13
Merged-chr3-108786753-3	chr3	108786249	108787249	+	708.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47091.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	2.28017236025708	2.52027104557418	2.23449541908948	2.37518093148666	2.21571442780452	2.50736569260673	0.0875289799261526	0.920258613002091	1
Merged-chr12-21426705-1	chr12	21426205	21427205	+	895.5	f0_balb.idr	Intergenic	Intergenic	-9269.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	3.04441339460781	2.96619790494381	2.97309099492199	3.27048508575595	3.19045370301139	3.44556613115212	1.3300372243544	0.0437070136636009	0.262791617379934
Merged-chr11-75585884-2	chr11	75585384	75586384	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2195.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	5.17580821055779	5.42671053429852	5.24592989323555	5.42729126867103	5.3249181488993	5.40367787529505	0.181540471920437	0.5984113067512	0.880780437003557
Merged-chr3-144678557-3	chr3	144678037	144679037	+	580.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	41798.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.9869383982787	6.14388818333547	5.7646577564675	4.99334750154568	4.53340275142015	4.85973778945947	-2.37819748755256	2.79344658764537e-10	3.36377863480168e-08
Merged-chr2-35463597-4	chr2	35463089	35464089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER21B|LTR|ERV1	-2140.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.55659846543854	5.49994563152697	5.2971939027791	5.07458543883826	5.13957385953188	5.29746086162783	-0.590506327424331	0.0904940740059807	0.400139808156533
Merged-chr12-4600914-2	chr12	4600414	4601414	+	859.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	7906.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	3.66918726079278	3.62573128885275	3.61166661263217	4.02311685139024	3.42775884011873	3.57168524640976	0.217586870130436	0.713702797443849	0.925594279345516
Merged-chr6-86525843-4	chr6	86525313	86526313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	376.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	8.35250938775767	8.35799709736083	8.01243319423077	8.36833941170172	8.12196418215256	8.06083766876063	-0.0900970213328295	0.698045942826479	0.920185149327572
Merged-chr13-28420027-4	chr13	28419532	28420532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	277548.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	3.8167624691035	3.94256853127487	3.62134696057249	3.30909031790727	3.48369747047092	3.40708349244107	-1.43377116778409	0.0156050091160692	0.136450357138491
Merged-chr16-84972136-4	chr16	84971631	84972631	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045889)	promoter-TSS (NR_045889)	-80.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	4.90330065025792	4.86652642298671	4.96052357265075	5.0251841282366	4.98845174823148	4.95352634056838	0.182301423455512	0.623959701285952	0.8917504625369
Merged-chr13-81051694-4	chr13	81051181	81052181	+	918.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	87607.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.55987318723985	4.76138863806414	4.58245861159681	4.44394148958018	4.35808870782268	4.3917516153388	-0.609419214207421	0.153313185006428	0.522167928093566
Merged-chr11-88203839-2	chr11	88203333	88204333	+	865.625	f0_balb.idr|f0_c57.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-555.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	7.03980942743764	7.24227337920671	7.17455373644231	7.01516622189655	7.33313672336026	6.85021549998809	-0.0903664055274388	0.732306489313878	0.931723932448277
Merged-chr5-4530892-4	chr5	4530410	4531410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	227306.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	6.03938726822749	6.44903308097218	6.51819364184394	5.9466923665476	5.8329745447802	6.5120483138928	-0.380886413770836	0.268039015697374	0.665224756707939
Merged-chr8-46847835-2	chr8	46847335	46848335	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008391)	TTS (NM_008391)	108090.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	4.14370291450154	4.27526092791868	4.22108543495241	4.19113127581957	4.13519392898967	3.99956661568388	-0.277278150364306	0.557052123572841	0.864019555945438
Merged-chr13-107022503-4	chr13	107021999	107022999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	-71.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	5.9597881530309	5.96776168269168	5.94882519368533	5.91506716904982	5.72680474014539	5.9867651777702	-0.155420050720998	0.603823680245556	0.882837513989345
Merged-chr7-55910595-4	chr7	55910084	55911084	+	873.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	51909.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	7.68814115441717	7.38370079358954	7.75345933069157	7.72448651935763	8.18297985717105	7.87557901983669	0.478395381761642	0.0594165003561989	0.315627342185083
Merged-chr9-123366884-4	chr9	123366391	123367391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001348167)	promoter-TSS (NM_001348167)	-36.0	NM_001348167	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	5.58121844944852	5.55152293191973	5.6420939181296	5.54402686444412	5.33235184411522	5.56906772481754	-0.212467608351737	0.516186678282737	0.844051513295388
Merged-chr7-111226472-4	chr7	111225979	111226979	+	795.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-103804.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	4.07325328204558	4.19409416155341	4.29635051076353	3.78159045273248	4.01827295806212	4.14591431487467	-0.577480755091289	0.247164934589751	0.644145276280485
Merged-chr7-45238111-4	chr7	45237619	45238619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007645, intron 2 of 7)	intron (NM_007645, intron 2 of 7)	720.0	NM_007645	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	6.73115985311715	6.92640721168147	6.90254073358577	7.01421434202383	7.07425256079361	7.13162390575569	0.333597050537008	0.172178774440864	0.550749681454482
Merged-chr3-51413551-3	chr3	51413076	51414076	+	886.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2440.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	4.55271196474221	4.56970771181387	5.04592419386748	4.58314851233012	4.21742464515797	4.66696734761297	-0.57464424286389	0.215433910647145	0.608899282194137
Merged-chr2-157096368-2	chr2	157095868	157096868	+	854.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001177439, exon 6 of 6)	exon (NM_001177439, exon 6 of 6)	9313.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	4.11723847881979	4.26892373921668	4.38356264301835	4.59280439273354	4.43429240776723	4.61373445411622	0.749322554315736	0.09223436186302	0.404610670970173
Merged-chr7-19687365-2	chr7	19686865	19687865	+	838.333313	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR1B|LTR|ERV1	5294.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	3.98518558595029	4.01821647997646	4.03098883408063	4.03485170383086	3.99639446579577	4.0517606926071	0.0451052816302134	0.925695275601193	0.983266386206129
Merged-chr13-111941629-2	chr13	111941129	111942129	+	928.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	73693.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.8195398672019	4.51714592293522	4.45547527275548	4.55425924218766	4.48134668056804	4.23968368175289	-0.430184036886594	0.339098228841153	0.729057813336113
Merged-chr3-105868331-2	chr3	105867831	105868831	+	639.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2527.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	3.95695548498337	4.01835296393113	3.95562543848948	4.20997460241791	3.96187394235444	4.21357127917637	0.431942125095681	0.378899905699033	0.761423546186667
Merged-chr2-180025834-2	chr2	180025334	180026334	+	674.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_177727, intron 1 of 8)	intron (NM_177727, intron 1 of 8)	847.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	3.45185130121734	3.09591852219853	3.29207564784809	3.26272061799958	2.98107091108925	3.36356287157216	-0.33631796741982	0.613321410674423	0.887185353929309
Merged-chr17-17901887-4	chr17	17901354	17902354	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14030.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	5.8168613933351	5.80227717838042	5.72283481698615	6.30341806355564	6.3282022972758	6.23302726180732	0.871473312395981	0.00237974356952117	0.035296560237561
Merged-chr16-13717088-4	chr16	13716626	13717626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011987, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-12710.0	NR_040574	76684.0	Mm.491043	NR_040574	ENSMUSG00000086550	Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	5.35476699909105	5.45451465043946	5.99024065672909	5.83491406904929	5.93111469672703	6.05058599772951	0.585030366574656	0.0929555243891732	0.406223489865496
Merged-chr15-74988426-1	chr15	74987926	74988926	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	-4996.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	7.02182793292429	7.51651328913358	7.05414831760537	7.80674557825339	8.07550993634819	7.5082710156012	0.87332242460935	0.00204773721149015	0.0315299477224167
Merged-chr6-50973537-3	chr6	50973046	50974046	+	978.111084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	197431.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	4.43623378073155	4.55824631762253	4.80766767716319	5.27182982870031	5.12287340276081	5.4981439812766	1.53700958231593	0.000129483070747319	0.00352784130672657
Merged-chr17-83695971-4	chr17	83695474	83696474	+	806.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-10189.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	3.41963534641567	3.11040119060396	3.49632905860501	3.42266564021813	3.18486129249368	3.17406519198113	-0.327093033312576	0.612484173718916	0.886754995942435
Merged-chr17-28810322-3	chr17	28809824	28810824	+	944.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081315, intron 2 of 12)	intron (NM_001081315, intron 2 of 12)	9198.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	4.21302222689286	4.49818201621625	4.51783381729984	4.35834899840028	4.50627857805877	4.77212292264308	0.339750683466677	0.452672784949647	0.809456767794566
Merged-chr19-42018083-4	chr19	42017578	42018578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-17960.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	6.60464947513857	6.29358772923672	6.58993763162866	6.28294094292617	5.58477099843035	6.29925513908239	-0.686669534866783	0.0445385819249735	0.265984807637494
Merged-chr9-24504635-2	chr9	24504135	24505135	+	727.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-1495.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	4.65462476428385	4.50081632461015	5.09655468801901	5.32248236202516	5.10049858542202	5.02647706493765	0.86602547995892	0.0372754931336577	0.238280870106621
Merged-chr10-81356509-4	chr10	81356011	81357011	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	-980.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	7.60007813663819	7.52641920771827	7.35143122468797	7.2851784206236	7.56725368750429	7.38649744025893	-0.115399264467771	0.628128563512291	0.893508518159715
Merged-chr2-29054036-7	chr2	29053541	29054541	+	905.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1025.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	4.07140191249677	3.89696903816591	3.89327902306493	4.4169947829963	4.36049454067166	4.55639480060292	1.33714482890695	0.0052706356123736	0.063493853400392
Merged-chr2-168954713-3	chr2	168954210	168955210	+	848.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009564, intron 1 of 5)	intron (NM_009564, intron 1 of 5)	877.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	5.76184126052295	6.11605481077683	5.91461928680683	5.88322025549994	5.69703352376333	5.69546934990547	-0.321037734727292	0.309004747992177	0.704802606494279
Merged-chr13-74807984-4	chr13	74807494	74808494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	-34.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	6.64070454321781	6.83776225953406	6.48508827529094	6.52154175189239	6.55861971445029	6.48944869573716	-0.232178667840455	0.386106175140463	0.766921835742467
Merged-chr4-16071510-4	chr4	16071016	16072016	+	932.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-57628.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	3.6669949565508	3.7047934393168	4.19570308325734	4.28736501962754	4.69895909202441	4.1721406751186	1.56145206963724	0.00409718968010697	0.052880248007188
Merged-chr14-8214090-4	chr14	8213600	8214600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	19.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	7.60426981996749	7.43674083317462	7.13825020620932	7.51688560817216	7.09630954006107	7.10385986785212	-0.234034086843472	0.388927173012131	0.768781380496339
Merged-chr11-97279503-6	chr11	97279044	97280044	+	919.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008942, intron 1 of 22)	intron (NM_008942, intron 1 of 22)	1032.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	6.57592031482524	6.5903312875123	6.70325439544311	6.53952167412703	6.14847663780167	6.56992885324351	-0.319737240790415	0.258201711945652	0.655659776470938
Merged-chr12-4162968-1	chr12	4162468	4163468	+	928.0	f0_balb.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	28815.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	4.77701504444948	5.12003034209522	5.18728403876749	4.69092640825017	4.36203440037867	4.92811750723518	-0.831228026478704	0.0560895837777311	0.305019416180475
Merged-chr18-62037770-4	chr18	62037275	62038275	+	998.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84700.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.44391264815995	4.93682937878653	4.80224506000775	4.82993090832078	4.40071079412134	4.42667028201789	-1.19341077439398	0.00883825320145919	0.0923886146214844
Merged-chr4-127126048-4	chr4	127125549	127126549	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099319)	promoter-TSS (NM_001099319)	6.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	4.8239318710682	4.6362643838832	5.17753531152332	4.89929690956996	5.15127054036756	4.90575635334765	0.245781906172527	0.5495994158772	0.860377701498819
Merged-chr9-20385165-4	chr9	20384641	20385641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	17.0	NM_001004190	434377.0	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	4.86946919603772	4.86318387889671	4.8116133997353	4.8734491977489	4.87180872433371	5.02149763002217	0.150403425180609	0.692701196886937	0.91870248759071
Merged-chr18-32405493-4	chr18	32404998	32405998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-27214.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	4.62881814759803	4.63612919170568	5.24641083916476	4.9532079387059	4.86607079567247	5.06520105898861	0.228473651110435	0.593545759819017	0.878551197776764
Merged-chr14-46994469-4	chr14	46993982	46994982	+	901.3875119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6858.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.85205302050398	5.47514719119801	5.64746496932501	5.91292574224364	6.21721066756846	6.16207761187192	0.771366633906187	0.0160346611710466	0.13906734278929
Merged-chr11-118244057-5	chr11	118243565	118244565	+	930.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4527.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.25863681078779	5.19065489320255	5.17042569798011	5.40117258650197	5.52771200855796	5.36507004182651	0.455820072244448	0.180763926992922	0.562841800215978
Merged-chr12-81669144-2	chr12	81668644	81669644	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37895.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	2.80478206692515	2.46927930841551	2.65567538165174	2.4347834255829	2.48272077657841	2.40456392767844	-1.24088302245156	0.133794077607817	1
Merged-chr2-73470586-4	chr2	73470086	73471086	+	930.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15167.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.58587399640518	4.82626083674156	4.84440429552981	5.07834817293492	4.64385496736605	4.90966764881677	0.293293703153129	0.478810976793366	0.823891137932924
Merged-chr5-34171935-2	chr5	34171435	34172435	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2409.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	4.80244941595256	4.66904888737765	4.94790267663437	5.03664855915015	4.75861217225043	5.35189139127494	0.555806660316852	0.179876959490355	0.561356228230283
Merged-chr3-65528353-4	chr3	65527864	65528864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-83.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	8.59739517517101	8.61463538745133	8.5276853692472	8.36093224375988	8.4545352785932	8.32820627139963	-0.273776873924609	0.17022414165502	0.547549496630235
Merged-chr6-125410190-2	chr6	125409690	125410690	+	650.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-29686.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.85051584511848	4.81150507298161	4.30021990773356	4.64307198871384	4.19489344855982	4.10999153905544	-0.847618133013917	0.0896001266213199	0.397751138279278
Merged-chr19-29355719-4	chr19	29355181	29356181	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6190.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	4.43374238260352	4.66573472090768	4.65889836788904	4.67096323273364	4.50192736034985	4.52116036685289	-0.0528261342489255	0.900589388712039	0.976864359165587
Merged-chr1-86703786-4	chr1	86703274	86704274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153530)	promoter-TSS (NM_153530)	-30.0	NM_153530	208718.0	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	6.68175775387403	6.58914504410336	6.15244542196738	6.50148230468982	6.24380608106212	6.36159524636127	-0.220889880402508	0.457696738823084	0.812459311871812
Merged-chr1-165459803-6	chr1	165459298	165460298	+	961.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028759, intron 1 of 18)	CpG	665.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	5.85622315507185	5.87507072191412	5.82517120022561	6.28500410722998	6.26125292428084	6.01070463317975	0.595564721666928	0.0421226390859039	0.256979291228088
Merged-chr10-79802588-4	chr10	79802090	79803090	+	993.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023128, intron 1 of 8)	MIR|SINE|MIR	9018.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	3.98440740792718	4.11368755627209	4.03381867814239	4.56915028566274	4.66095167330609	4.56185015639272	1.47786813756091	0.00116840646255499	0.020326315060898
Merged-chr2-126674104-3	chr2	126673619	126674619	+	872.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1233.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	7.47693908919191	7.99962526878886	7.40576951749691	7.56003695225389	7.71532305424309	7.32577542219535	-0.165537074290181	0.55049780261139	0.860709619458349
Merged-chr11-68502633-4	chr11	68502140	68503140	+	872.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	-379.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.66902933998343	4.4432082921837	4.88182471394075	4.71207732118014	4.27829847866356	4.8777043805887	-0.078298038086463	0.865503726631423	0.968641478520565
Merged-chr17-46283036-4	chr17	46282522	46283522	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252473)	promoter-TSS (NM_001252473)	4.0	NM_001252475	74094.0	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	6.33411426074113	6.00713331492659	5.55112327590296	6.50345613708042	5.88868837017163	5.67855641667318	0.114012989570804	0.773433831093154	0.944077605586187
Merged-chr14-30671455-8	chr14	30670958	30671958	+	957.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17083.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	6.77305234646788	6.74213476260498	6.71753473597992	6.6827763958547	6.72346223982376	6.62939317733033	-0.0994293938816829	0.690498177060574	0.917884372823008
Merged-chr13-51845685-4	chr13	51845178	51846178	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-997.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	7.38449865601388	7.54666807034154	7.22919249636198	7.6965712445034	7.93007013379985	7.6594698860651	0.541813392556947	0.0236478600361078	0.180307077603267
Merged-chr11-11716867-3	chr11	11716371	11717371	+	927.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	26694.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	3.28821975819345	3.37691262333451	3.65221614532217	3.36927030453255	3.37447361066342	3.5716250345098	-0.0126664978332572	0.983235240486218	0.996249532451341
Merged-chr10-81359052-4	chr10	81358573	81359573	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	1582.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	6.55063722691223	6.47152347950958	6.13340655324036	6.3109994815311	6.72525116328959	6.07668109832039	0.0154297263134133	0.961930294174379	0.990691557558141
Merged-chr8-70633467-2	chr8	70632932	70633932	+	834.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330687)	promoter-TSS (NM_001330687)	-976.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	5.06030739476268	4.79149386712218	4.44611437680507	5.27370647889759	5.05617802548563	4.56676167781329	0.447590884179993	0.33713986495766	0.727056134236911
Merged-chr11-115003414-3	chr11	115002904	115003904	+	845.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1524.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	6.61043727403164	6.90345941365174	6.95697582101819	6.88195298778668	7.33617491367707	6.85823248726289	0.348010843213111	0.219884494170355	0.61423936831415
Merged-chr5-145165202-2	chr5	145164702	145165702	+	747.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_133735, exon 2 of 9)	exon (NM_133735, exon 2 of 9)	1902.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	2.39906647684978	2.29373305397736	2.45942786360634	2.46100847901656	2.41283001302312	2.71704094449655	0.913244287494188	0.265515289177246	1
Merged-chr10-87856787-2	chr10	87856287	87857287	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-1478.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.76921187889976	3.75038304539523	3.99745561995306	3.69901613395316	3.86620982662803	3.97291102959092	0.0370398628163117	0.943962216899096	0.987495247303971
Merged-chr11-20468841-4	chr11	20468321	20469321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-74432.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.19035918928069	5.00248568396519	5.78605702038529	5.66753483556969	5.3818184126406	5.60222143617035	0.375639393962907	0.342623462686241	0.731506763225739
Merged-chr10-80800292-2	chr10	80799792	80800792	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013651, intron 1 of 8)	intron (NM_013651, intron 1 of 8)	1557.0	NM_013651	20222.0	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	2.94409509255867	2.57191456221962	2.79496062755538	2.87527446854333	2.87739424692219	3.04745130251687	0.755094996334883	0.312334706499823	0.707122889610482
Merged-chr13-55693497-4	chr13	55693005	55694005	+	974.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181278, intron 1 of 1)	CpG	381.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	7.84050508342958	7.50865494308543	7.63050803474588	7.94316166118238	7.4934070642798	7.70528431560238	0.0828548280760858	0.741819115250018	0.934976596408911
Merged-chr17-46752309-4	chr17	46751808	46752808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305990)	promoter-TSS (NM_001305990)	-94.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	7.18703867304415	7.05200953959577	7.16202944886539	7.14478669560605	7.16359601654633	7.13325904905348	0.0222650483973814	0.924040444524874	0.98287748869349
Merged-chr5-64734688-2	chr5	64734186	64735186	+	682.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1C|Other|Other	-68837.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.12854282995515	3.33776357476055	3.03038510421981	3.2813489761819	3.17155655544559	3.34066136683973	0.348164280845203	0.591686691356026	0.877718735408096
Merged-chr4-154925895-4	chr4	154925355	154926355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178931, intron 3 of 7)	intron (NM_178931, intron 3 of 7)	2222.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	4.7097575446612	4.57976424514299	4.36303290438659	4.94496091833143	4.84482800814832	4.48120497073671	0.499200434560706	0.255508693592887	0.652637143105991
Merged-chr16-91793796-4	chr16	91793295	91794295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110276, intron 5 of 15)	intron (NM_001110276, intron 5 of 15)	64424.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	6.10838646784603	5.7537097559787	5.80316322148922	5.90650787314986	5.90484136599115	5.70484248556252	-0.096067289600944	0.761568690205013	0.941258867861232
Merged-chr1-127214377-3	chr1	127213809	127214809	+	812.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145128, intron 1 of 17)	B4A|SINE|B4	9323.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.60419487055579	3.60348905380417	3.70451879173416	4.16369739273827	4.27826972818192	3.77757154403753	1.47474853372021	0.00656227350372811	0.0746015963339291
Merged-chr17-35051892-4	chr17	35051405	35052405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1662.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	7.43941292844036	7.46082152888818	7.42995355674043	7.76658751706669	8.11397653548947	7.70306915728614	0.63438174789074	0.00777907950783294	0.0844023533299991
Merged-chr17-78374887-3	chr17	78374391	78375391	+	695.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_015800, exon 17 of 17)	3' UTR (NM_015800, exon 17 of 17)	43261.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.20924236641171	4.29435940608077	4.34879550722674	4.19141972954771	3.76956515931039	4.15112737870788	-0.681707840945614	0.171435306037104	0.549512267218896
Merged-chr2-150669826-4	chr2	150669335	150670335	+	925.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_040331)	TTS (NR_040331)	-1595.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	3.45692719068651	3.69908267321161	3.54295054787216	3.27592160583242	3.24947548617522	3.33661931297194	-1.11401708916237	0.0640989696948063	0.329862519040475
Merged-chr1-138559973-3	chr1	138559467	138560467	+	881.861084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021605, intron 2 of 9)	intron (NM_021605, intron 2 of 9)	59790.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.81464089190163	3.64727449341619	3.54563290828297	4.00690846883258	3.87109876318898	3.89005553715215	0.782534676167149	0.145637835311174	0.508806562677333
Merged-chr15-103476870-3	chr15	103476375	103477375	+	716.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153505, intron 18 of 30)	intron (NM_153505, intron 18 of 30)	23050.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	3.26217743526757	3.489788320845	3.2399046173293	3.55882370417683	3.44928890638282	3.3718287516588	0.470945803687923	0.439846141100662	0.801408375858453
Merged-chr10-80157654-2	chr10	80157154	80158154	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_021565, exon 9 of 9)	3' UTR (NM_021565, exon 9 of 9)	7972.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	4.08617370879521	4.08327774047902	4.60864096414905	4.18973858608728	4.11211761576594	4.8094484198109	0.324859553958964	0.542908314626379	0.857468369859798
Merged-chr14-121916479-4	chr14	121915977	121916977	+	995.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-703.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.26181840659496	4.32862619167127	4.36218206424473	4.56441891280414	4.25952602816643	4.84948680688041	0.636252835275113	0.172042765911628	0.55057560520216
Merged-chr14-70175861-1	chr14	70175361	70176361	+	1000.0	f0_balb.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	954.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	6.80767977413246	6.75291611364925	6.93450869055569	6.96406082801192	6.9940867887723	7.16909765563038	0.327080382352771	0.18598440295752	0.570437177975205
Merged-chr4-40148554-4	chr4	40148074	40149074	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	5309.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	6.67238759729181	6.18940663475056	6.42647097775114	6.51100016420765	6.44948886572355	6.43037273797768	0.0298775264448111	0.917366245833112	0.981588017376699
Merged-chr12-3425548-2	chr12	3425048	3426048	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_030694, intron 1 of 2)	B2_Mm2|SINE|B2	1199.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	5.36957639948144	5.67132135310001	5.76044200212244	5.78356712825077	5.63018063466878	5.52566801668427	0.092447513819237	0.78240355249703	0.946514804905031
Merged-chr8-3659080-4	chr8	3658570	3659570	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_022984)	TTS (NM_022984)	3300.0	NM_022984	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	2.7717532956734	2.59265606696045	2.71385590472434	3.02662075579738	2.81538433539996	3.09005120086917	1.45555877951492	0.050190736212502	0.285159854855906
Merged-chr17-70973187-1	chr17	70972687	70973687	+	603.0	f1_c57bl6.idr	TTS (NM_023402)	TTS (NM_023402)	17329.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.21218260816933	3.03909678642636	3.31905568153495	3.23580526173314	3.03813901471074	3.38957695586347	0.131720231448032	0.840103847212751	0.962819298477451
Merged-chr10-30804080-4	chr10	30803571	30804571	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358841)	promoter-TSS (NM_001358841)	-745.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.96585476866336	7.14618397548983	6.94296307630244	6.51641199898544	6.92183521530859	6.82862847478885	-0.391368118174513	0.141515211920031	0.502183459290427
Merged-chr7-141370148-4	chr7	141369635	141370635	+	966.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5025.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	6.77965838387954	7.09387531586313	6.93369816076596	7.04306094305307	7.27032781652843	7.16204227502779	0.334636624286516	0.185162054977391	0.569299939790811
Merged-chr5-124014990-4	chr5	124014491	124015491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17269.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	8.06630568191992	8.17611410827057	7.80584953024699	7.95646049926267	8.38592789060695	7.67868539158452	0.0302530484650682	0.911696330109521	0.980159546174906
Merged-chr17-34364007-4	chr17	34363554	34364554	+	937.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_079835, intron 6 of 8)	Lx8|LINE|L1	9232.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	5.46967655305581	5.36976760457415	5.21492503419828	6.12903953826475	6.62378807010134	6.20557514152183	1.74589577917373	1.95797582958665e-07	1.28993866055618e-05
Merged-chr3-135200733-3	chr3	135200214	135201214	+	728.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11849.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	3.77764669602875	3.8127692225032	3.70351122103711	3.48124026272691	3.79360429034287	3.66755794187887	-0.361435606000827	0.514011190748263	0.842918670363435
Merged-chr5-24426181-2	chr5	24425681	24426681	+	763.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009207, intron 1 of 22)	intron (NM_009207, intron 1 of 22)	949.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	3.88604398710695	4.2994911479534	4.18854244436942	4.06229802141985	3.85380537320821	4.38232159286552	-0.0814842504611401	0.876647443734777	0.971344419120637
Merged-chr4-149167324-4	chr4	149166845	149167845	+	974.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081274)	promoter-TSS (NM_001081274)	-640.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	7.43019889228434	7.88513384826564	7.49131347493929	7.27744036260234	7.72886505433952	7.16845117546585	-0.287019991378889	0.310445209782385	0.705829393476587
Merged-chr15-97175211-4	chr15	97174721	97175721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7977.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	6.69887891442515	6.84349139733593	7.07443394671132	6.72975476062911	6.86523041280691	6.99350798867059	-0.015348678578552	0.953547691408472	0.989446911725587
Merged-chr2-29125074-4	chr2	29124593	29125593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_198033, exon 1 of 26)	5' UTR (NM_198033, exon 1 of 26)	101.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	7.01874530622158	7.13940136885409	7.19198769774187	7.0607143583662	6.99270220542278	6.77063005381514	-0.245873819117664	0.32201493796473	0.715384462470548
Merged-chr11-98023313-4	chr11	98022813	98023813	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-686.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	7.03463215943174	6.89853924308929	7.22237232274939	7.45416474314516	7.56427278733561	7.09309880381751	0.512642432846721	0.0504288910843461	0.285740163080251
Merged-chr18-82815350-4	chr18	82814854	82815854	+	984.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-40543.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	3.79327839927169	3.58556155902803	3.3938566522638	3.83548126476562	3.43816619334306	3.52710562155447	0.0161486771863628	0.978623895317791	0.995160277495735
Merged-chr11-85832459-2	chr11	85831959	85832959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_077059)	promoter-TSS (NR_077059)	-71.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	2.02169232534532	2.01978941819931	2.21252067889811	1.88292221797361	1.75020772104199	1.88854300345166	-2.31211118830551	0.0317527614585547	1
Merged-chr15-7115267-2	chr15	7114767	7115767	+	671.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14305.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	2.25774940309075	2.15449360153717	2.32297737646222	2.48692101794017	2.4555414865178	2.58997355703748	1.81780691952121	0.0362496042297983	1
Merged-chr3-89210955-3	chr3	89210456	89211456	+	941.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357367, intron 2 of 6)	intron (NM_001357367, intron 2 of 6)	3379.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	7.70025798003731	7.62510966229101	7.12125266511446	7.61579134164185	7.65493123977647	6.99302513207642	-0.0727993635388288	0.809150664926101	0.954721853010197
Merged-chr10-43765498-2	chr10	43764998	43765998	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 3 of 3)	intron (NR_040581, intron 3 of 3)	19340.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	3.20887786753415	3.3320847690112	3.556727183865	3.32216001332145	3.20940300825054	3.62577757895084	0.0841426552679102	0.893854279065733	0.975280227461205
Merged-chr15-76313443-4	chr15	76312936	76313936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-6191.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	6.43572817914074	6.43448004869019	6.4852931395981	6.02778296868315	6.08014533146361	6.30748290712366	-0.523533030085446	0.0594081147043279	0.315627342185083
Merged-chr6-67069971-4	chr6	67069502	67070502	+	703.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-32595.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.53786739013696	3.47092357405463	3.38436786808521	3.58876421172296	3.14653661922362	3.4564948855354	-0.232618535067504	0.708082980983026	0.923620645882265
Merged-chr12-12164591-1	chr12	12164091	12165091	+	658.0	f1_balb.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-97548.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	2.67855361899849	2.78969971280413	2.77922003226552	2.70940293911493	2.67949607624191	2.9104467529777	0.0815909886867058	0.910944175243457	0.979996676367672
Merged-chr4-107082370-4	chr4	107081887	107082887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346552, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-14504.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	3.59187315246005	3.24423496971854	3.44629804942112	3.22929778885152	3.12525535559133	3.56866139867452	-0.471330452325089	0.464168260815726	0.816188315062566
Merged-chr6-51550141-4	chr6	51549627	51550627	+	691.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	L1MB8|LINE|L1	4834.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	4.31909878807693	4.25905596809418	4.78797981402871	4.51719563136269	4.53011576482496	4.55453776716469	0.175567937033841	0.699959368794314	0.920780791926092
Merged-chr4-13127265-3	chr4	13126761	13127761	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	220424.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	2.6914746467278	2.87204561237949	2.87247451149623	2.48697007788011	2.89215229645234	2.56783597955606	-0.760335765272577	0.357079896455562	1
Merged-chr5-138756052-4	chr5	138755468	138756468	+	644.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_030565, exon 1 of 10)	exon (NM_030565, exon 1 of 10)	887.0	NM_001359593	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	2.62301777376766	2.48721047251376	2.61002657443466	2.38828663896814	2.32198612177005	2.49531976576599	-1.09910955335746	0.177304535860693	1
Merged-chr10-45122713-1	chr10	45122213	45123213	+	548.0	f0_balb.idr	intron (NM_011156, intron 9 of 14)	intron (NM_011156, intron 9 of 14)	55499.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	2.85628885431912	2.8904572894069	2.88924143000141	2.75814022601753	2.6714388270375	2.84126926914998	-0.646591682417555	0.365741762770502	0.750755886042233
Merged-chr8-117504755-2	chr8	117504255	117505255	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	6480.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	2.31692153743515	2.25091201022429	2.69078707192628	2.59650554788046	2.47941272388029	2.70464264003187	0.986502881305315	0.249624494592963	1
Merged-chr9-77748216-1	chr9	77747716	77748716	+	834.666687	f0_balb.idr	Intergenic	RMER4B|LTR|ERVK	-6319.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	3.33934041592378	3.33605119719643	3.60712644030757	3.23996812580886	3.28818088796175	3.47296860736204	-0.36494890792269	0.549676197098273	0.860422089436068
Merged-chr13-104152527-3	chr13	104152038	104153038	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25928.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	4.96273666208151	4.58654424375899	4.50181524997296	4.35087827721614	4.35778657081149	4.34376448989153	-0.882529746418122	0.0481201852332591	0.278093094380402
Merged-chr5-64394110-2	chr5	64393684	64394684	+	786.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	73758.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	2.44033457860496	2.33476609022631	2.51761943704126	2.34600547397941	2.16571283472262	2.46664126329649	-0.677607917232833	0.428128290922869	1
Merged-chr6-128839050-4	chr6	128838598	128839598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-12783.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	7.5529987213869	7.65897122689068	7.65690032963376	7.55440210421691	7.94784806314076	7.57187061420898	0.130620456091356	0.587972085734571	0.876182349656829
Merged-chr2-163987109-1	chr2	163986609	163987609	+	576.0	f1_c57bl6.idr	Intergenic	MT2B|LTR|ERVL	-8088.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	4.87115681053814	4.93460208014115	4.74107688790417	4.74780950694922	4.25494587485184	4.68895682070501	-0.664936435976918	0.126462414621484	0.475355519288444
Merged-chr10-118600343-4	chr10	118599891	118600891	+	620.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43866.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	6.38954712247615	6.85835717337533	6.44837708535526	6.58366701875758	6.56274794156006	6.1544289138808	-0.211463531666856	0.490302983520119	0.830042606694236
Merged-chr7-100216184-4	chr7	100215690	100216690	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11417.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	6.87536456778232	6.89664747254758	6.85560398815267	6.57828411981548	6.64741163184425	6.95535033057712	-0.231709598651075	0.373764796417267	0.757546812967132
Merged-chr19-3922197-1	chr19	3921697	3922697	+	547.0	f1_balb.idr	intron (NM_026316, intron 2 of 9)	B1_Mus1|SINE|Alu	7519.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	2.55251346333232	2.37764983420216	2.57435801929843	2.50983517984942	2.37179499752056	2.70865928789227	0.174335255258024	0.829320998553387	1
Merged-chr18-34954392-4	chr18	34953912	34954912	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-61.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	8.62538103386045	8.85152645244986	8.19044992495203	8.61542044592311	8.77758951642211	8.02097275207294	-0.0994842437379737	0.733394079028019	0.932052212786391
Merged-chr18-88805008-3	chr18	88804516	88805516	+	692.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	89191.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	2.64594252584737	2.78566877237139	2.80553113494121	2.62836243483794	2.6202779043812	2.8183307822295	-0.316330809048039	0.66991732826781	0.909799099879351
Merged-chr18-76929437-4	chr18	76928928	76929928	+	994.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	-599.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	5.48614042678864	6.0298570211079	5.83392300729711	6.06213954760735	6.16809264514102	5.99217680406666	0.481122499844149	0.140070649880245	0.500150136687783
Merged-chr17-28518199-4	chr17	28517698	28518698	+	904.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12663.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	5.48384310294906	5.82114901747075	5.36518227358521	4.5098429898445	4.66823257219188	5.74172907264458	-0.843052221912866	0.32872852803926	0.720905796252831
Merged-chr14-62027898-4	chr14	62027408	62028408	+	887.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	265071.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.7432793900136	5.75280579447229	5.84147274713177	5.47632646919217	5.17295362614291	5.32607215720883	-0.855856593133567	0.00969473691188439	0.0983580453607137
Merged-chr19-46394562-3	chr19	46394074	46395074	+	874.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1161.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	5.04613649657243	4.31167727914893	4.8864255323642	5.09108478525688	5.40148656373375	4.95280421094244	0.820974819799642	0.0701216085227158	0.346765648517659
Merged-chr16-5234649-2	chr16	5234149	5235149	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	1028.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	4.62815439182051	4.28655822247258	4.42984321669254	4.54430149077735	4.64948872866242	4.70189722704	0.427594275267502	0.323353172374946	0.71668986599242
Merged-chr5-103387587-4	chr5	103387113	103388113	+	806.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37579.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	2.71429999983721	2.63878510705405	2.61544381795625	2.67610561899788	2.61872521497792	3.04564736068981	0.679007527776401	0.376413961884434	0.759214935290638
Merged-chr12-84275496-4	chr12	84274994	84275994	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-9802.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	6.65083331315379	6.66349936530818	6.36263630397796	6.42063864160919	6.42028923923206	6.3224998602372	-0.29677637218063	0.275253502610139	0.672734308479956
Merged-chr8-79399948-2	chr8	79399448	79400448	+	681.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	-480.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.85166934794042	4.90705956252311	4.50577823166299	4.85763174414089	4.47335205163359	4.78283947877865	-0.158354343133023	0.713600652997795	0.92557476402444
Merged-chr1-143916115-2	chr1	143915615	143916615	+	608.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	88034.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.22500871030555	6.53800717165054	6.24235536438301	6.15518872598239	6.19951219867071	6.34200863540354	-0.199197870586218	0.487835361773474	0.828740765241895
Merged-chr10-13869749-4	chr10	13869258	13870258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	-801.0	NM_001347362	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	6.60439367514581	6.74800713524625	6.01136425861226	6.69635940815801	6.76492716176349	6.09937895831699	0.0954672215767895	0.784876405301483	0.947770123968912
Merged-chr2-77286981-3	chr2	77286527	77287527	+	790.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6435.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	2.44866708877478	2.63196551786099	2.67096832647321	2.44981131208054	2.60005899260395	2.55772051610542	-0.268296247876707	0.73339763924536	1
Merged-chr5-28259604-4	chr5	28259117	28260117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-13829.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	4.48906172445175	4.34040280242469	4.67613587486352	4.44664489785478	3.9650608840378	4.63016109098605	-0.347362734655091	0.482839615506077	0.825853985496863
Merged-chr13-69810384-4	chr13	69809875	69810875	+	899.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138596, intron 1 of 3)	intron (NM_138596, intron 1 of 3)	493.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	5.35466092468127	5.25441838580754	5.27135322579485	5.21244445313044	5.15299322839811	5.33471406887977	-0.135650216774907	0.695191091937457	0.919230570201314
Merged-chr12-112870980-4	chr12	112870455	112871455	+	932.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10039.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	2.96588226864824	3.06869373056904	2.85291176651644	2.84070530990547	2.804965507545	2.98709607595177	-0.459504089072218	0.511939142411249	0.841619835183182
Merged-chr4-59352348-7	chr4	59351907	59352907	+	852.738098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	86226.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.9801952467891	6.88658073577749	7.0224983767278	6.40520571835555	6.4374170161525	6.80924471563836	-0.642161398346248	0.0166263273161853	0.142829180603464
Merged-chr7-81201618-2	chr7	81201118	81202118	+	664.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12186.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	5.90658255864669	5.40080817567572	5.45714921292377	5.62308884508212	5.65096706736325	5.29363329919966	-0.138134776359858	0.703967975405399	0.922296896558746
Merged-chr11-6476814-2	chr11	6476314	6477314	+	641.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-738.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	6.82895194820729	7.03496509054414	6.72631712531761	6.88406787356285	7.13672010413489	6.52062066267567	0.0161853210864701	0.955337588950737	0.989763164889919
Merged-chr19-55099484-4	chr19	55098972	55099972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	5.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	7.27195435399866	7.46774949235987	7.22911847756549	7.28936301449748	7.26053640556702	6.86351516439585	-0.252109779626926	0.327988967369695	0.720172556707989
Merged-chr17-25112283-2	chr17	25111795	25112795	+	872.599976	f1_balb.idr|f1_c57bl6.idr	intron (NM_027880, intron 3 of 20)	intron (NM_027880, intron 3 of 20)	3610.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	3.71424299568781	3.8299602037302	3.81463242966928	3.97542607991388	3.99277675262144	4.25485710358751	0.879129845957521	0.0861066864953266	0.388640927483648
Merged-chr5-142440693-4	chr5	142440191	142441191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-23240.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	5.52341602061421	5.50606116964143	5.89035368336121	5.20674524882763	5.05395041436636	5.42709460794828	-0.809645371464782	0.0242771380659626	0.183424326177483
Merged-chr7-89338757-4	chr7	89338262	89339262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360745)	promoter-TSS (NM_001360745)	25.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	8.23238177570521	8.33141862383201	8.10065965843291	8.41631107743315	8.50587237407357	7.99961580805119	0.147242747500039	0.537252654857992	0.854347231828453
Merged-chr16-55664098-4	chr16	55663596	55664596	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	158042.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.96502458118162	6.16347013650726	6.16045728119725	6.10073707195411	5.87271104678674	6.04910566592753	-0.158114768669862	0.592218750834558	0.878003422897225
Merged-chr2-19006321-4	chr2	19005813	19006813	+	840.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7994.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	6.2312901739667	6.30090025241034	6.25132371812423	5.86117924016204	6.30736998935628	6.05529138795987	-0.275702362250597	0.358102232418257	0.74454984718519
Merged-chr1-156037395-4	chr1	156036893	156037893	+	919.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-913.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	7.36947342393739	7.32952344387906	7.23702694670289	7.63914911753476	8.05484794449513	7.52819814152784	0.663778860833026	0.00923650977512845	0.0952592346763619
Merged-chr5-43393424-4	chr5	43392897	43393897	+	875.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122172.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	3.20197307470578	3.12090634808285	3.37203299707637	3.40191257125207	3.21316493439894	3.33316541875935	0.3511341117065	0.57282641227953	0.869934493236159
Merged-chr3-19411333-3	chr3	19410822	19411822	+	605.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97273.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	3.72654531132625	4.13155015363265	3.85724347414123	3.73110730911493	3.5576217134288	3.6648036274021	-0.886149527519876	0.108506215869664	0.440122339805614
Merged-chr4-16103121-3	chr4	16102617	16103617	+	945.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60526.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	4.25962834459731	4.29047644835161	4.23304671060002	4.1485491297266	4.1846344716543	4.34457386908841	-0.10972611231165	0.8103503208844	0.955030259072015
Merged-chr1-79761352-1	chr1	79760852	79761852	+	620.0	f0_balb.idr	intron (NM_027057, intron 1 of 4)	CpG	417.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	7.21544350836169	7.32869379149518	6.66008636847408	6.97257491471931	6.96647325066651	6.77031380694684	-0.306283463191574	0.286316163605378	0.683634696330879
Merged-chr1-44180625-3	chr1	44180130	44181130	+	961.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011729, exon 15 of 15)	exon (NM_011729, exon 15 of 15)	32886.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	3.33822147391607	3.35669651767425	3.36806150568822	3.29614596020276	3.46623914625926	3.20629288930336	-0.0713495291180162	0.907301725259212	0.978875083701163
Merged-chr3-88687091-2	chr3	88686591	88687591	+	897.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151827, intron 2 of 13)	intron (NR_151827, intron 2 of 13)	1304.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	4.24001208710829	4.38762298308671	4.75344958033436	4.30293187056399	4.39507958822158	4.56018104475064	-0.120951528116303	0.793802965468959	0.950531747588938
Merged-chr18-34140082-4	chr18	34139580	34140580	+	953.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-80904.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	4.712219362209	4.38104529765686	4.80920111720995	4.9632527752144	4.72699225357622	4.94550431107548	0.550946477074516	0.189827517456443	0.575898496828517
Merged-chr8-72317812-4	chr8	72317302	72318302	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1260.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	7.87641294888103	7.96276154927053	7.4965947139472	7.19445266797959	7.55676434289922	7.34675351244603	-0.612428157621215	0.0174195601342258	0.147355450779068
Merged-chr9-13540990-4	chr9	13540475	13541475	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-79014.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.70582125263957	5.59566659166493	5.36150340210151	5.61540323729034	5.7079967590494	5.69004055030901	0.184304568363956	0.572057066735253	0.869782633645926
Merged-chr17-46160928-4	chr17	46160413	46161413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-119.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	7.28136255116031	7.30984298614695	7.47172566386299	7.63957588298392	7.92654939236031	7.538794153987	0.537113239878622	0.0260485738954599	0.19148774067439
Merged-chr3-90264289-2	chr3	90263789	90264789	+	815.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-946.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	5.38934079107534	5.12881820662021	5.31044408383352	5.31154971921926	5.32552270562989	5.54681389776504	0.222845735950134	0.523764010128505	0.848428438699863
Merged-chr2-144213968-4	chr2	144213463	144214463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB2|LINE|L1	-24673.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	6.66674931679899	6.47657582223929	6.64481671419928	6.63396340658425	6.90213221067402	6.31472928893276	0.0914829704069795	0.753399848690793	0.938549578325581
Merged-chr5-21384874-4	chr5	21384462	21385462	+	771.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	12289.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	4.34804000654782	4.2649433537347	4.38073451170357	4.67860057173946	4.5811333475941	4.53469514433523	0.688316909913627	0.107797521675532	0.43858624171699
Merged-chr11-98412044-2	chr11	98411544	98412544	+	624.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	-440.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	2.25061133154172	2.32581151676485	2.38087146150454	2.38484747339363	2.34062264216399	2.51804990381875	0.614827602469831	0.45561954149557	1
Merged-chr15-100600130-4	chr15	100599668	100600668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-184.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	7.70966521359782	7.34218094414247	7.01238871125892	7.16278531487964	6.74180990651916	6.92709634193189	-0.661456955601472	0.0240867082733318	0.182532497450582
Merged-chr13-30713811-2	chr13	30713311	30714311	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35422.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.63518810059389	3.14987733371334	3.68841838817817	3.26916142670915	3.14727488036743	3.28430346069991	-1.08227963334027	0.0982084917533559	0.417772982783845
Merged-chr1-131083734-1	chr1	131083234	131084234	+	1000.0	f0_balb.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14109.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	7.59424336879993	7.79063386249474	7.53498064838024	7.59804610089413	7.64608537466543	7.60154511794732	-0.0480116783160732	0.830986436461986	0.960370002015736
Merged-chr11-69266495-4	chr11	69265997	69266997	+	971.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-29475.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	5.45148843351703	5.48503536182255	5.7168255749709	5.61984521884369	5.67198350929787	5.56526498229442	0.144932395832876	0.654606961473639	0.903872559164033
Merged-chr9-55937402-2	chr9	55936902	55937902	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357652, intron 1 of 32)	intron (NM_001357652, intron 1 of 32)	717.0	NM_001357652	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	4.01896907860639	3.95594961037445	3.82441095131052	3.81855049283531	3.44712927405936	3.73757896151474	-0.878073312804457	0.111607594697552	0.446313714155454
Merged-chr10-88379687-3	chr10	88379193	88380193	+	944.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004164, intron 1 of 20)	CpG	281.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	5.48634742766885	5.13941145086501	5.61193967063291	5.54902497933054	5.02116568884105	5.17039840758168	-0.305999325695528	0.43079813427908	0.796606987332891
Merged-chr18-49980378-4	chr18	49979867	49980867	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	940.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	4.07112766775351	3.8141747349086	3.9523555142462	4.07003243034056	3.93370758354511	4.0215753461302	0.170910775953157	0.733166200942435	0.932039456283818
Merged-chr2-181527707-2	chr2	181527207	181528207	+	571.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271584, intron 2 of 5)	MLT1K|LTR|ERVL-MaLR	7222.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	3.12749524158931	2.98620523476691	3.30134481437507	2.98888866912006	2.81336970071902	3.09729343555389	-0.798125761685526	0.247957006474761	0.645106161833394
Merged-chr8-125198607-3	chr8	125198189	125199189	+	748.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	144494.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.89796661696657	6.38584967964426	6.27589049388415	4.53119360799325	3.82732124195092	4.48559347717228	-4.29131100909565	1.46829252008732e-07	1.00142363943792e-05
Merged-chr11-106659340-3	chr11	106658880	106659880	+	827.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-46450.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.26199599658443	6.11443929899754	6.28575756703346	6.11220647230809	6.2177602487126	6.49025670718386	0.0924206683409354	0.749491157792899	0.937362436422593
Merged-chr5-141080536-4	chr5	141080042	141081042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-79946.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.59000081165424	7.61425266797306	7.28843850457755	7.51832086912934	7.7175069909666	7.07384645617922	-0.0522109698269536	0.849295330482028	0.964617601505288
Merged-chr7-45452511-2	chr7	45452011	45453011	+	849.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_030678, intron 14 of 15)	B3|SINE|B2	7375.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	2.71207724547567	2.79493580953971	2.87503061568417	2.74401979007428	2.78934835179971	2.88800094416451	0.068537684886543	0.923439611686225	0.982699256056545
Merged-chr18-75494931-4	chr18	75494457	75495457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-19688.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	5.30687869142164	5.23826193142318	5.52110460370324	5.39047629716668	5.3166292691534	5.96088229349644	0.42578524847989	0.259332519092809	0.656900978680461
Merged-chr11-22972400-2	chr11	22971900	22972900	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011663, exon 1 of 1)	5' UTR (NM_011663, exon 1 of 1)	395.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	7.56642656844871	8.18495230504211	7.41828908873739	7.16615034444023	7.66491317653815	7.51756980223275	-0.445154860181565	0.142202706732752	0.503446333443608
Merged-chr1-131020648-2	chr1	131020148	131021148	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	803.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	6.35452645363087	6.11044947580919	5.77497603941306	6.90569005469461	7.14508940615978	6.55105385765202	1.25662215678479	0.000102853046963962	0.00290305167292313
Merged-chr17-84981846-4	chr17	84981358	84982358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	16833.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	3.85778251544911	3.9443983982872	3.99958808605354	4.28556967876294	3.97922414063174	4.64616142787284	1.09543925896979	0.0354387481006899	0.231096187457853
Merged-chr2-52862126-4	chr2	52861614	52862614	+	984.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	4246.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.84499772983868	5.65484434065959	5.42461258210197	5.40471351970458	5.77475539097798	5.54833414482389	-0.128598107741509	0.709951048464699	0.924166640014037
Merged-chr2-170118364-2	chr2	170117864	170118864	+	877.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	12856.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	3.70970779610294	3.8044940049033	3.7386402427542	3.91876698183234	3.44094319074212	3.90837524325498	0.0515788767610989	0.92778480267897	0.983698457021454
Merged-chr7-75848268-4	chr7	75847763	75848763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182782)	promoter-TSS (NM_182782)	-75.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.36427302653107	6.63556295561952	5.94529397074514	6.24966534647986	6.04610474497819	6.10382548434114	-0.374565543003122	0.24137503621882	0.638385260200477
Merged-chr3-135688578-2	chr3	135688078	135689078	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2969.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	3.73986050590024	3.35331356684207	3.57373228443847	3.95751786824789	3.75667224844282	4.17849011096756	1.31458252903759	0.0234419394386136	0.179399638466546
Merged-chr17-3102542-4	chr17	3102052	3103052	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12420.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	3.21039626135707	3.3877641839074	3.65997245490539	3.32550743344709	3.07146323445734	3.63247463640637	-0.265462800176015	0.689007596545418	0.917235946766438
Merged-chr14-47353180-3	chr14	47352781	47353781	+	819.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20579.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	6.20376971890326	6.05703240116488	6.1797721361048	6.2155431347029	6.14542277576404	6.04321269219689	-0.00985587306333016	0.97226691150953	0.993868590220018
Merged-chr4-129823456-4	chr4	129822971	129823971	+	970.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2763.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.11197562703288	6.00995951876064	5.96654869412841	6.17657265435824	6.30663651436867	6.07458431225692	0.277439881300914	0.334837246443298	0.725198429760335
Merged-chr12-3902194-2	chr12	3901694	3902694	+	610.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 12 of 17)	intron (NM_153743, intron 12 of 17)	10450.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.95065992222098	2.93774425217697	3.32115981033788	3.00306141549339	2.88164805945246	3.33961858429862	0.0309217540488617	0.965226067625871	0.991840962282624
Merged-chr15-76670971-2	chr15	76670471	76671471	+	646.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-672.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	4.08655973411741	4.12181926420379	4.21797279248611	4.13363014445863	4.3140740716025	4.45458829060826	0.449663918686308	0.335524013468768	0.725694211280635
Merged-chr11-116130186-4	chr11	116129694	116130694	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	934.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	8.01155603167705	8.10784047817446	7.7929876891244	7.71616106764702	8.09851576668435	7.78000562741595	-0.141875467740225	0.556034413854032	0.863567857024905
Merged-chr7-45488837-4	chr7	45488325	45489325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027903)	promoter-TSS (NM_027903)	-20.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	5.32604150089384	5.17484532061374	5.34442913978743	5.42152148641968	5.1629827097722	5.2835964580533	0.0196298322443025	0.955334670916368	0.989763164889919
Merged-chr11-75531612-4	chr11	75531119	75532119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-75.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	7.12031032203823	6.99638155992734	6.97320009862878	7.17375798123105	7.44471245880719	6.9891229802827	0.291728849877361	0.257394789191709	0.65469146752759
Merged-chr9-103228633-4	chr9	103228239	103229239	+	615.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	1547.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	4.85392314849722	4.79424830665515	4.74127576215831	4.51937179968731	4.1562353668493	4.80668294066467	-0.700211862368983	0.122340065154591	0.467799120431176
Merged-chr4-138217134-4	chr4	138216623	138217623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	-4.0	NM_001356432	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	6.93472472348869	6.46620612802252	6.62935498552851	7.04893795222361	6.73065275595556	6.58438315888928	0.175339466502617	0.549841180308825	0.86050509437616
Merged-chr4-132804643-4	chr4	132804144	132805144	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8280.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	7.78350454851957	7.46743008697213	7.41993698857273	7.92127196800633	8.35066795746271	7.77281846751241	0.68128304032091	0.0106896526360499	0.105346244913753
Merged-chr9-90226574-4	chr9	90226069	90227069	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 5 of 12)	intron (NM_194334, intron 5 of 12)	44200.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	7.30060516574978	7.28878879713314	7.18123250187514	7.24282985978812	7.09274327762695	7.05997465658069	-0.188341340342151	0.423281477628096	0.791868419997774
Merged-chr12-100114155-2	chr12	100113655	100114655	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008947, intron 2 of 9)	RSINE1|SINE|B4	1824.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	2.97807713857852	2.77578656912438	3.0126012367636	2.90974072509963	2.66622668887434	3.027194016801	-0.259646192108304	0.721254093106631	0.928451291671431
Merged-chr14-61680234-2	chr14	61679734	61680734	+	866.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	2139.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.03694405292486	7.38670919963542	6.90325820769079	7.11114411241656	7.47947534623495	7.28771077238321	0.255752605706407	0.345592074255594	0.734002739226063
Merged-chr5-93152665-4	chr5	93152107	93153107	+	904.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	53888.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	2.81601430637578	2.91282210964139	2.87997403070747	3.18439691781866	3.06277838230361	3.35698305846495	1.53471455283923	0.0266836510480455	0.194383863963785
Merged-chr18-5805777-4	chr18	5805257	5806257	+	952.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	AmnSINE2|SINE|Deu	213110.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	6.42979335356157	5.98591938609013	6.55105353580141	5.98161122806797	5.89832380445536	6.25944378741468	-0.490445670721528	0.127477346786249	0.477271790294292
Merged-chr12-33125757-4	chr12	33125261	33126261	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015602, intron 4 of 5)	MLT1J|LTR|ERVL-MaLR	21825.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	5.17594349119604	5.11489769804282	4.67522430702213	5.16176026880487	4.71911423392985	4.74388347480477	-0.270137967626596	0.525627535325059	0.849071708183764
Merged-chr6-124478164-4	chr6	124477677	124478677	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13393.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	7.71961569362953	7.60805091667086	6.88640670974218	7.49783567874622	7.47161584370003	7.00672548844315	-0.167306027910389	0.594541910777405	0.879121363157181
Merged-chr2-60822367-3	chr2	60821863	60822863	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59075.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	7.62732477554577	7.82112288534978	7.28517355377664	7.48693706571192	7.45785910462355	6.86911752455848	-0.427550751058722	0.142846925926592	0.504499448747873
Merged-chr12-98270547-4	chr12	98270047	98271047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008152, intron 1 of 1)	L1MEd|LINE|L1	1912.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.85222480079277	7.85077080513799	7.63705551694315	7.96199150689261	8.17912398093903	7.96625054217705	0.363276359609477	0.104121791829353	0.430369383266445
Merged-chr10-94908799-2	chr10	94908299	94909299	+	684.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35779.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.32068453427869	4.36724668481265	4.0251420705519	4.12103434762133	4.1285851606638	3.937519843437	-0.513878005305675	0.29498918816595	0.691928183145752
Merged-chr8-111536519-4	chr8	111536026	111537026	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-114.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	6.18150203956965	5.80693164273346	6.01897043083253	6.33073371591489	5.70364759613053	6.07989568803882	0.0823072137522685	0.80765485552688	0.954557080558103
Merged-chr2-32876078-4	chr2	32875565	32876565	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146119)	promoter-TSS (NM_146119)	-69.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	4.8134666743419	4.57311697207427	4.88458131600237	4.3341574668561	4.23491443854839	4.11266218457259	-1.32216990683555	0.00344595008771549	0.0466987972147607
Merged-chr18-62232817-4	chr18	62232313	62233313	+	737.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	52713.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	4.20018780440063	4.26290999949439	4.1710018243108	4.36218553799362	4.32404076464669	4.41814167659085	0.404415647065596	0.367875698868859	0.752923975674939
Merged-chr3-88645979-2	chr3	88645491	88646491	+	865.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001198913, intron 20 of 21)	intron (NM_001198913, intron 20 of 21)	7151.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	2.92241513938675	2.87346425092868	3.07253912151844	2.87124364496101	2.7621431759552	2.9120219029263	-0.534515214028296	0.444312712031728	0.804151037842623
Merged-chr2-3418303-2	chr2	3417803	3418803	+	573.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355205, intron 1 of 3)	intron (NM_001355205, intron 1 of 3)	294.0	NM_001355210	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	3.2968778885762	3.294888338531	3.07289268749713	2.98098109537321	2.84027269240167	2.75609679373119	-1.74240554513491	0.0169699799911744	0.144720518100404
Merged-chr6-54944750-2	chr6	54944250	54945250	+	806.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_172729, exon 4 of 12)	exon (NM_172729, exon 4 of 12)	26911.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	3.16006219477179	2.90445148085684	3.61768674134712	3.23876582322738	3.2283598360757	3.43960004174805	0.181826152016443	0.795509107238696	0.951171392009988
Merged-chr15-59264109-3	chr15	59263589	59264589	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42859.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	5.23725572712241	5.19706028663471	5.12336768176391	4.85884307631338	4.59156326759731	4.98223627823309	-0.831405874625088	0.0310244672284655	0.213194074973539
Merged-chr9-13841329-2	chr9	13840829	13841829	+	705.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_176836, intron 9 of 9)	intron (NM_176836, intron 9 of 9)	13613.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	4.16504531809975	3.59407936261209	4.24726523120669	3.9168599890547	3.52145478598008	3.91153389421845	-0.726061530185396	0.218634534277996	0.612741862631882
Merged-chr6-120114830-3	chr6	120114309	120115309	+	866.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	21429.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.72735128591851	5.79972531719048	5.76830010883063	4.81425619767483	4.65301156581665	5.079696841042	-1.88433436298088	2.0091259826372e-07	1.31945820649784e-05
Merged-chr5-139284824-3	chr5	139284323	139285323	+	777.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	31326.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	5.117055585614	5.13442354920533	6.01079859139127	5.06746825845175	5.14449450066591	5.666034252424	-0.328479878803589	0.46681288015532	0.817652165708111
Merged-chr6-17779005-4	chr6	17778575	17779575	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022332, intron 1 of 15)	B3A|SINE|B2	29905.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.47993942684917	4.69117529939958	5.04432965978076	5.06174908543588	5.21351975813405	5.35209724753713	1.01004096844736	0.0131870849926058	0.121954277426162
Merged-chr6-34867819-4	chr6	34867346	34868346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	4700.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	7.09608013367587	7.1504531768552	7.07923851255603	6.81041971334018	7.09000956313943	6.84517470269529	-0.274687853288767	0.269345017135645	0.666452341991608
Merged-chr5-7955755-4	chr5	7955239	7956239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4733.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	4.46802626936686	4.55368196452994	4.53694297978772	4.6030811060058	4.60960243435131	5.06770772251613	0.586393234921529	0.175217782563929	0.554966360305257
Merged-chr18-39650553-4	chr18	39650067	39651067	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122930.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.12062662323865	7.4014150822574	7.32812414914971	7.20691981477437	7.36197803931683	7.13721989650282	-0.064499689172598	0.791232571999793	0.949694766870106
Merged-chr1-85988510-4	chr1	85988005	85989005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27450.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	6.03283867713808	6.01340824200965	5.79748150475441	6.33007475543745	6.3792841398403	5.88693382573969	0.459811443168408	0.141667225168626	0.502372712168617
Merged-chr2-172420630-4	chr2	172420159	172421159	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080820, intron 2 of 6)	intron (NM_001080820, intron 2 of 6)	-19919.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	6.77678186069788	6.71102330087612	7.11733383693782	6.66307222530793	6.84512790015201	7.19791944020935	0.0643631247643836	0.822797206239323	0.958153338614688
Merged-chr11-83191725-2	chr11	83191225	83192225	+	723.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	395.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	6.17459755362545	6.39077494404389	6.03582863971673	6.57355894569823	6.67323916787874	6.04887353838988	0.420497386944132	0.185603969738989	0.569827526810432
Merged-chr4-150495712-4	chr4	150495228	150496228	+	872.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	156446.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	3.32643704337584	3.0168718365039	3.02513932381733	2.83957984898363	2.70210269433256	2.97741244687746	-1.44758745760232	0.0470696898682126	0.274688820385368
Merged-chr17-21383748-4	chr17	21383255	21384255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172486)	promoter-TSS (NM_172486)	7.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	5.4947617518281	5.7995294144396	5.96604349415288	5.94190068527831	6.01464022347923	5.64987632807156	0.229730228085293	0.490328336531571	0.830042606694236
Merged-chr3-90065806-2	chr3	90065306	90066306	+	706.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_028567, exon 4 of 4)	3' UTR (NM_028567, exon 4 of 4)	3010.0	NM_028567	73545.0	Mm.482512	NM_028567	ENSMUSG00000027942	1700094D03Rik	-	RIKEN cDNA 1700094D03 gene	protein-coding	2.57907228579367	2.34530873980503	2.59589044164649	2.37514975140811	2.4527904672961	2.48138803586182	-0.441649688630573	0.587042651115126	1
Merged-chr11-29885386-4	chr11	29884881	29885881	+	971.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146016, intron 5 of 41)	intron (NM_146016, intron 5 of 41)	-59713.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	2.99290664451364	2.63190838013073	2.81782107741237	2.89657795645004	2.92104882725512	3.01210231424746	0.576924446139638	0.429278741135041	0.795682190695026
Merged-chr4-132800677-2	chr4	132800177	132801177	+	603.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-4313.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	4.66605185869427	4.66401451359971	4.98081448843184	4.78166549665799	4.9403081114764	4.83268096158144	0.204821825853215	0.609150044896052	0.885053989692691
Merged-chr10-62547072-4	chr10	62546581	62547581	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19636.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	4.52081417853446	4.51279352319786	4.34963589952759	4.29037272885317	4.28542986559846	4.54432431096248	-0.255020862328778	0.565108490834184	0.866552670637515
Merged-chr16-95752704-4	chr16	95752201	95753201	+	966.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50294.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	3.76744737911498	3.43486536016681	3.23544090219718	3.77820635756273	3.52211497510668	3.60917886585578	0.470018338062791	0.453013202582688	0.809568578005205
Merged-chr2-150363608-2	chr2	150363111	150364111	+	637.6999509999999	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-846.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	2.46153817439555	2.59874078630432	2.39554175427745	2.81753553004938	2.62860272242643	2.85888008535518	1.57424778859164	0.0547855371272497	1
Merged-chr10-99928429-2	chr10	99927929	99928929	+	581.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-87392.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	3.29573866133821	3.40827929379247	3.39608289351981	3.45475287119022	3.54361344632501	3.57526091238837	0.594439598345523	0.306658014801221	0.702911768149086
Merged-chr5-36483959-3	chr5	36483455	36484455	+	965.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025725)	promoter-TSS (NM_025725)	330.0	NM_001170454	231151.0	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding	4.5982659947859	4.82716126572772	4.58548012785802	4.25405031799355	4.50596451277759	4.7296943455219	-0.425048373893326	0.336039483658164	0.726090328603253
Merged-chr5-145231767-4	chr5	145231270	145232270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	11.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	9.09260849094055	9.57618726825853	8.9499492179501	9.02805478987305	9.16315697029757	8.75489306670667	-0.331509960427726	0.194245639954592	0.581403645992907
Merged-chr14-50363751-3	chr14	50363247	50364247	+	879.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_205819)	TTS (NM_205819)	5833.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	3.15210131830025	3.42741051834725	3.33071278489795	3.48714714654174	3.55809866872019	3.67053303856716	0.987680151965221	0.102272325204652	0.426453301710283
Merged-chr4-129623041-2	chr4	129622541	129623541	+	675.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025455, intron 1 of 5)	intron (NM_025455, intron 1 of 5)	867.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	4.25597418359922	4.57196087530375	4.38043902034771	4.55281721158355	4.4092312042175	4.61477231550714	0.274120917291078	0.535980778180237	0.853776870181888
Merged-chr14-54405441-4	chr14	54404938	54405938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	4034.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	7.00333511875981	6.76026772357914	6.69433997401784	6.55548627839678	6.20930627782528	5.9877820352292	-0.8802693717536	0.00333025998223219	0.0454940523069407
Merged-chr7-71873110-3	chr7	71872634	71873634	+	915.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36561.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	3.92767423220222	4.29515152905727	4.23744928124399	3.59177371932821	3.22535912680829	3.63002299359803	-2.34425348462316	0.000120022726924273	0.00330934815259161
Merged-chr10-59967375-4	chr10	59966879	59967879	+	980.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15609.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	4.7943186495277	4.87882270019347	4.74495085147428	4.62392990574554	4.40506950597545	5.20870300129304	-0.0671454811077519	0.883490622093899	0.973366271872746
Merged-chr3-81050042-3	chr3	81049550	81050550	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	13634.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.52677518457091	6.13440657945245	6.13578834941903	5.71478001159157	5.78278798888967	5.67959102659418	-0.961300075440536	0.00202879136769797	0.0312903933500302
Merged-chr16-33830167-4	chr16	33829695	33830695	+	862.0750119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	CpG	530.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	6.26435280686729	6.70654867437404	6.3838685743721	6.49039492413802	6.55984584078664	6.4622987170685	0.0573184844173037	0.840592094444705	0.962819298477451
Merged-chr11-69135389-2	chr11	69134758	69135758	+	897.7000119999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011786, intron 11 of 14)	intron (NM_011786, intron 11 of 14)	8881.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	5.11620933671854	5.15892258288955	5.4687017079861	5.02341954377321	4.81536114661035	5.12261020558241	-0.562922694564614	0.139305399104743	0.498729067153151
Merged-chr18-38422479-3	chr18	38421959	38422959	+	772.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	3552.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	4.8449010445182	4.77632056625463	4.7071394708291	4.81295226479912	4.79064530514996	4.73346443244537	0.000596879784623739	0.998783528875654	0.999777890446572
Merged-chr15-102326147-4	chr15	102325627	102326627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027044)	promoter-TSS (NM_027044)	11.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	6.49515162551749	6.80548778166254	6.81545277794037	6.73401672282608	6.66708071903219	7.1093188727919	0.205395406634636	0.466621709590655	0.817586753758551
Merged-chr10-128496303-2	chr10	128495803	128496803	+	842.916626	f1_balb.idr|f1_c57bl6.idr	exon (NM_172259, exon 4 of 7)	exon (NM_172259, exon 4 of 7)	2382.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	2.99494999857756	3.25984404948093	3.31821095450881	3.57375360797581	3.16437314733334	3.33388439178277	0.686996501219498	0.295825143852354	0.692708934886082
Merged-chr9-107264050-4	chr9	107263541	107264541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	25355.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	4.52489315965531	4.36262492795833	4.40576432105347	4.07894659586712	3.88984594796277	4.20931301960464	-1.05242365069319	0.0262757867961337	0.192460886244075
Merged-chr1-88240772-3	chr1	88240213	88241213	+	724.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001281466, exon 17 of 42)	exon (NM_001281466, exon 17 of 42)	13693.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.55201956703906	3.57243297317432	4.10250342062507	3.46087468852576	3.58616258952601	3.8640021060615	-0.386222490851458	0.520802483959512	0.84673270453317
Merged-chr13-63254080-3	chr13	63253581	63254581	+	938.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	14052.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	6.5519456729244	6.8773605493026	6.462624291815	6.05408902528607	6.20830881676527	6.01806664982201	-0.897482786333291	0.00210292422488002	0.0320882565649814
Merged-chr9-21012495-2	chr9	21011995	21012995	+	645.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3445.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	4.33422036364668	4.52037261251867	5.1398038382999	4.55927028616506	4.2374228446049	4.89741243814604	-0.278051459796003	0.586504626393154	0.875566335987149
Merged-chr2-11398604-3	chr2	11398106	11399106	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040615)	promoter-TSS (NR_040615)	-106.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	3.71476505689298	3.5313248517175	3.45218924305156	3.54487010537754	3.45264710978433	3.40849147709878	-0.379315156940156	0.513591831086747	0.842682331573089
Merged-chr9-21598710-2	chr9	21598210	21599210	+	772.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5879.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	2.02455934348441	2.0627709024575	2.28657153529507	1.96343079849655	2.07926374753804	1.89520331042863	-1.091736788833	0.268140560529341	1
Merged-chr1-40294576-4	chr1	40294093	40295093	+	901.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001123382, intron 4 of 10)	intron (NM_001123382, intron 4 of 10)	28007.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	6.78609025304358	6.9549223896501	6.35387731037763	6.49003856079921	6.59140665150647	6.39402361658268	-0.373592566935996	0.201670801949113	0.591183995476557
Merged-chr13-112735243-4	chr13	112734734	112735734	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_178746, exon 15 of 15)	3' UTR (NM_178746, exon 15 of 15)	-65543.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.03252250274392	5.04341575240323	4.88928706603213	4.39602598021293	4.13394240574295	4.43008991847263	-1.66020539974515	9.96391796894851e-05	0.00282575898554965
Merged-chr6-48832663-4	chr6	48832183	48833183	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8305.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	5.35727392887393	5.29733926958611	5.43982918251434	5.36821181288023	5.32838184055666	5.66373724173488	0.173598413205064	0.613367684857962	0.887185353929309
Merged-chr11-115675781-4	chr11	115675294	115676294	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	23740.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	6.67253955300799	6.37533371298131	5.99019048575006	6.74542933512075	6.6583806302399	6.54279023528425	0.422130238693072	0.169019403207199	0.545635945763902
Merged-chr17-27586873-3	chr17	27586376	27587376	+	735.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291046, intron 2 of 4)	PB1D9|SINE|Alu	-21149.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	3.80514310477093	3.73771150608592	3.7088880758122	4.4637319696739	4.03300761141473	3.89361790605446	1.21719520321464	0.0236645556014574	0.180368264402864
Merged-chr14-118947374-4	chr14	118946867	118947867	+	975.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	9435.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	3.63419511639145	3.54440192013841	3.51822313552898	3.62495509252549	3.86260241390593	3.900211273802	0.783408162310337	0.155922663346805	0.526009040006524
Merged-chr4-122955503-4	chr4	122954990	122955990	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029662, intron 3 of 13)	intron (NM_029662, intron 3 of 13)	5698.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	4.0266679295036	4.09106688534025	4.01063308861893	4.51766366711584	4.40303299735979	4.18195524774276	0.921709051696941	0.0508375883519231	0.287175664358967
Merged-chr1-88219202-2	chr1	88218681	88219681	+	604.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_201410)	TTS (NM_201410)	7222.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	3.82383152211303	4.54899838076054	4.33456208468498	4.05040142593925	4.17592585451644	4.63598438146602	0.0873594688769038	0.873913398231912	0.970492962848917
Merged-chr7-67244101-4	chr7	67243593	67244593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	21477.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	7.53937420526756	7.68913003981155	6.97687699543693	7.29087861206688	7.68388533504992	6.99051830927592	-0.119799797491434	0.702560284190023	0.921908665861083
Merged-chr6-34368118-4	chr6	34367611	34368611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008012, intron 9 of 9)	intron (NM_008012, intron 9 of 9)	13965.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	6.35492584873337	6.56807635874913	6.1434171182982	6.16201281377572	6.13499458591716	5.83662694024836	-0.525764424337819	0.0840505694628492	0.383661081936741
Merged-chr8-41395499-3	chr8	41395009	41396009	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	-20812.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	3.49375903560137	3.1317406326444	3.31971280386555	3.11110813074308	3.09460746686449	3.10009601233297	-0.940635597442626	0.149694030734227	0.5162145513421
Merged-chr11-78343522-4	chr11	78343001	78344001	+	868.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011676)	promoter-TSS (NM_011676)	6.0	NM_011676	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	5.1649511358434	5.16832172111092	5.27692646420711	5.40556184334504	4.91476679607569	5.37024989845938	0.0770305459275731	0.838598314258078	0.962538562826178
Merged-chr2-31239379-4	chr2	31238916	31239916	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-6507.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	5.77906855854276	5.75721678030627	5.82500561737901	5.78127658585543	5.92415660281326	5.46703344423598	-0.0570314363721098	0.860391596881672	0.967494646757537
Merged-chr7-90018695-4	chr7	90018177	90019177	+	940.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B1|LTR|ERVK	-10482.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	6.65501144567541	6.71671282582855	6.729802888002	6.66813854735032	6.80206458980631	7.12535816928691	0.267952297205271	0.317109282617808	0.711036676253037
Merged-chr11-120039841-4	chr11	120039372	120040372	+	972.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1909.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	6.95311029937536	7.21532218864563	6.8964887959803	6.16723867396081	6.70251015491923	6.21071126086673	-0.991987670370673	0.00109062641748381	0.0192754551711965
Merged-chr4-12501270-4	chr4	12500773	12501773	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-329258.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.65279319747491	5.41863500257556	5.52227138655326	5.78783149468261	5.4692550090797	5.55641707357022	0.139665614691468	0.675812997331073	0.912370572767042
Merged-chr4-86575700-4	chr4	86575196	86576196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	23.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	7.36960804295634	7.55777817403134	7.05469392568264	7.35318283725868	7.46652508023374	7.01405878191181	-0.0764209577603261	0.779241066942968	0.945710994231145
Merged-chr19-21785941-4	chr19	21785445	21786445	+	904.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	7605.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.01943271535555	5.07273759978994	5.05269844905723	4.74822658581993	5.4228960275056	4.97427622793514	0.100220399152751	0.807668252128092	0.954557080558103
Merged-chr7-83640847-2	chr7	83640347	83641347	+	570.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_023377, exon 6 of 6)	3' UTR (NM_023377, exon 6 of 6)	8830.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	4.06626419576961	3.9409373485978	4.15686400073806	3.91724757334835	3.53199807319466	4.38755802124334	-0.196506142205215	0.735151580097973	0.932617455907478
Merged-chr1-138138873-2	chr1	138138373	138139373	+	774.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	36253.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	4.76618860111907	4.471558050249	4.80679218865538	4.68822372489371	4.51797580864154	4.90656776869673	0.0440455520253646	0.917979411725969	0.981747877135909
Merged-chr2-163754491-3	chr2	163753995	163754995	+	949.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4256.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	3.63512183097333	3.37977227267147	3.3663627651302	3.2925658716181	2.95698296391935	3.38220718986295	-1.0122406579912	0.126608677327409	0.475549804679232
Merged-chr6-71950829-4	chr6	71950328	71951328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009088, exon 18 of 34)	exon (NM_009088, exon 18 of 34)	41775.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	4.38265621644608	4.62801838086772	4.76088386310727	4.55812465923817	4.67498816061553	4.37451988013375	-0.101421334052375	0.817651396389324	0.956767881392089
Merged-chr15-64098481-9	chr15	64097997	64098997	+	819.685181	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-38049.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.87546017861671	4.6374985769184	4.66253797552142	5.6979889628113	5.42317473494241	5.6355221219834	1.76106636201301	3.22470466434914e-06	0.000151081771233763
Merged-chr6-28488386-3	chr6	28487892	28488892	+	700.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019776, intron 1 of 23)	CR1_Mam|LINE|CR1	8044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	3.05740440699918	2.92275929026113	2.6996718903996	2.90878585404638	2.8118371476885	2.96549068507618	-0.0631303177030015	0.930826831617452	0.984695878321107
Merged-chr16-11003834-2	chr16	11003334	11004334	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-5064.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	3.80201898909575	3.61169131476329	3.87692245839685	3.70578374850315	3.93378850226782	3.51895908952278	-0.0737102151719808	0.896535275329923	0.975838835430135
Merged-chr11-86836560-4	chr11	86836064	86837064	+	932.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28904.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	3.80322383088264	3.82425676204815	3.93401169115866	3.86457271125076	3.42358965459715	4.04805704328252	-0.177935679826589	0.756935576429693	0.93974849191549
Merged-chr13-23585132-4	chr13	23584636	23585636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001290530)	TTS (NM_001290530)	834.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	7.85343268775801	8.13111672830046	7.78472082097763	7.74101634156654	8.08725775223915	8.0727971921855	0.057645295417873	0.811157110722358	0.955134885850785
Merged-chr14-79557198-2	chr14	79556698	79557698	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 2 of 8)	B4A|SINE|B4	-30462.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	5.13588062816731	5.52341798250194	5.30007529304476	5.59588314637256	5.77160883797993	5.65820216494606	0.657722933094524	0.0553192824301086	0.302352000291939
Merged-chr15-59383168-2	chr15	59382668	59383668	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164604, intron 2 of 4)	ORR1D1|LTR|ERVL-MaLR	8970.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.20438503513556	3.12191413877952	3.1711586101076	3.21741075049096	3.18552203329305	3.51371079477491	0.57792635079625	0.362942112516415	0.7485142520149
Merged-chr11-100805674-3	chr11	100805183	100806183	+	716.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113563, intron 2 of 18)	intron (NM_001113563, intron 2 of 18)	16887.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	3.62358473762352	3.38825276370956	3.40278015441551	3.24115992099964	3.10986649816894	3.52753008961959	-0.712595368173639	0.260128753599564	0.657649400461384
Merged-chr7-89342134-6	chr7	89341621	89342621	+	917.955566	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	-3334.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.10604482665366	4.62317157245115	4.4196919400321	4.83005939487793	4.51840328231632	4.65502645100297	0.655668220952112	0.156813188186286	0.527644132904867
Merged-chr4-108456141-4	chr4	108455636	108456636	+	801.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3290.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	5.46297921328676	5.525702545705	5.44097487438803	6.06844003085332	6.05966509627651	5.68320917419318	0.873489761447035	0.00673859163183439	0.0760277603392102
Merged-chr10-128211848-4	chr10	128211334	128212334	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025716)	promoter-TSS (NM_025716)	-40.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	5.23831346505965	5.13063964684508	5.28563147674345	5.8716277781709	5.60665367030382	5.69711474357061	0.984467980944501	0.00325372370199561	0.0447867397511415
Merged-chr16-27388998-4	chr16	27388525	27389525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	69.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	8.14101597160847	7.8350895666837	7.95426643237741	8.10231808738712	8.00896505432307	8.25558281350711	0.195767556209349	0.385102248616502	0.76623192225821
Merged-chr5-108660790-4	chr5	108660308	108661308	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199011)	promoter-TSS (NM_199011)	22.0	NM_001357029	110524.0	Mm.260921	NM_199011	ENSMUSG00000004815	Dgkq	110kDa|DAGK|DAGK7|Dagk4|Dgkd	diacylglycerol kinase, theta	protein-coding	5.09134209614203	5.28725542421749	5.02943476322676	5.02081251615353	4.88577852386218	5.0942320345695	-0.322364042837098	0.38583674420827	0.766674506964127
Merged-chr10-87861140-2	chr10	87860640	87861640	+	789.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	29.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	6.57186709660822	6.94145440413137	6.94477752425408	7.42209810493954	7.50394859365201	6.85516756935787	0.714656145416832	0.0148786785341704	0.131873144809464
Merged-chr8-68882343-1	chr8	68881843	68882843	+	705.0	f1_c57bl6.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	1788.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	4.81621497354168	4.93066816756924	5.03644617310573	5.58316186598701	5.43025603982551	5.06606954810547	0.952024197143129	0.0116656507168333	0.112063863049445
Merged-chr10-10461698-4	chr10	10461207	10462207	+	715.520813	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	10607.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	4.98202714210668	5.18681707584495	4.99921500936602	6.10355312227229	6.05753202470099	5.71793410349336	1.73046708452545	5.72093353920862e-07	3.3172643758221e-05
Merged-chr12-102459285-2	chr12	102458785	102459785	+	842.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9849.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.35039675761076	3.45931348460316	3.89187436162744	3.41159588875107	3.89309094834545	4.1322346832223	0.843681937441872	0.18584605433782	0.570175160932842
Merged-chr3-96105570-3	chr3	96105063	96106063	+	638.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025614, intron 1 of 11)	intron (NM_001025614, intron 1 of 11)	1036.0	NM_001025614	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	3.60429848399321	3.60790093585028	3.54141005445267	3.41976215879176	3.58523855227196	3.61185576324084	-0.162337882272977	0.773396419998614	0.944067559391607
Merged-chr3-127793464-7	chr3	127793061	127794061	+	949.404785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2904.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	7.05437708794193	7.1270224144287	6.7083222676045	7.30160948986966	7.88297918791121	7.15634911876932	0.76591589748961	0.011441117613149	0.110529724179136
Merged-chr5-34773584-4	chr5	34773092	34774092	+	814.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010414, intron 1 of 66)	RMER1B|Other|Other	11852.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	3.5221019091691	3.28056195374437	3.36932932184239	3.20969152178605	3.16152519095642	3.49377006449528	-0.423102579044543	0.499301205260587	0.834407103145886
Merged-chr2-6689915-2	chr2	6689415	6690415	+	661.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110232, intron 4 of 15)	RSINE1|SINE|B4	31747.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	4.59379807816268	4.42815271406075	4.58054798158921	4.67103223483923	4.61619440549379	4.56452446111249	0.210579256377081	0.612626449796574	0.886885261037085
Merged-chr5-123697427-2	chr5	123696923	123697923	+	970.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_027494)	TTS (NM_027494)	-13062.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	2.86790831881475	3.0360712816508	2.93573389755573	2.89185688292422	2.554864970332	2.94903045150387	-0.715782543095225	0.344563431665879	0.733150745942016
Merged-chr6-15726634-4	chr6	15726133	15727133	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	5972.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.04710137620745	5.07407543826141	5.07976340629342	4.48541689691468	4.77104012258483	5.07825727148345	-0.604963807844723	0.138435820722502	0.497209965018279
Merged-chr15-79687919-4	chr15	79687431	79688431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-59.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	9.169191329235	9.12040242563475	8.53167784795479	8.92009407226908	8.98368759084178	8.53029818816154	-0.200590817338766	0.447252379964597	0.806316645191341
Merged-chr17-57343133-2	chr17	57342633	57343633	+	978.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15|LTR|ERVL	-15553.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	5.60109833279463	5.75582826405267	5.55430406232644	6.06348356004191	6.12672775053985	6.11767292094307	0.8072074614404	0.00745913665104039	0.0818242718768531
Merged-chr3-90083183-2	chr3	90082675	90083675	+	715.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	3654.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	5.72682952596293	5.45937074946362	5.54046965239012	5.76949793146092	5.80521870245224	5.65996470615244	0.310542278448956	0.332133131710744	0.723387053255178
Merged-chr19-5592056-4	chr19	5591555	5592555	+	856.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9818.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	3.13993532332554	2.97418703832131	3.0380611614538	3.03310443916268	2.7468425553019	3.05163119884691	-0.502182350201328	0.473087078573088	0.82062643861472
Merged-chr15-95805215-4	chr15	95804726	95805726	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	14383.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	8.04531117621408	8.02828304200954	7.46043687905244	7.71667690927912	7.75322768627516	7.45142246207943	-0.328331101502487	0.216298266534525	0.609736247697899
Merged-chr13-80883338-4	chr13	80882824	80883824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153410)	promoter-TSS (NR_153410)	-60.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	7.41564562304104	7.65514912269339	7.18731022953815	7.40089323083823	7.945420971842	7.34241842201534	0.23801556154551	0.406185251807916	0.780583800069297
Merged-chr8-69973789-4	chr8	69973298	69974298	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 1 of 12)	CpG	585.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	5.26578388650312	5.53906289651861	5.5476580766969	4.95284532921594	4.9989957823347	4.99644901600534	-0.977521684349425	0.00678740660757532	0.0764230756431837
Merged-chr17-24722795-3	chr17	24722352	24723352	+	803.402771	f1_balb.idr|f1_c57bl6.idr	TTS (NM_008503)	TTS (NM_008503)	1536.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	4.41557647397294	4.18116991009753	4.40559031730721	4.45308085841815	4.37676454854923	4.78018712435404	0.515420895882108	0.257353384697626	0.654680413499888
Merged-chr9-108998107-2	chr9	108997607	108998607	+	741.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	6205.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	3.23953945462076	3.25051753610147	3.37456459254325	3.58356757200515	3.31351364514198	3.7538784218851	1.02160081845034	0.096386311711733	0.41387719191402
Merged-chr15-38301780-3	chr15	38301349	38302349	+	922.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1138.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	7.00361829211085	7.19656414171853	7.47555949626029	7.0678612354335	7.21036655453072	7.05001633471259	-0.175162254006769	0.497681085022022	0.833770467452658
Merged-chr2-29623533-6	chr2	29623074	29624074	+	991.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	3854.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	8.07834862993142	8.0633848229077	7.6026605320275	7.85825188960991	8.13849621654686	7.79016244705917	0.00403636669303238	0.987305611766647	0.997218304929226
Merged-chr2-118260015-4	chr2	118259526	118260526	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3060.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	4.54712386352557	4.38505606151946	4.12693362896745	4.5220111277672	4.35703628674418	4.29632656939249	0.0581705824199486	0.900111891584774	0.976728292075907
Merged-chr9-61913291-2	chr9	61912791	61913791	+	819.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_018853)	TTS (NM_018853)	1219.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	3.31579622054603	3.12152107722507	3.28466093134241	3.29511351422648	3.13695327182767	3.24247951853006	-0.0743786987299892	0.905683463390612	0.978461283862502
Merged-chr4-130922139-4	chr4	130921605	130922605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8771.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.05669661245504	6.37904542841358	6.11381174227017	6.14799553563062	6.35493150163048	5.74710916381327	-0.121025222290186	0.710357477047579	0.924293540432205
Merged-chr17-88553197-2	chr17	88552697	88553697	+	809.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	23073.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	5.41662158868276	5.30389536654631	5.62276728610318	5.38819034527141	5.38755059141633	5.57953075501242	0.00706704897051646	0.983433284717159	0.99632923932188
Merged-chr15-27874085-4	chr15	27873577	27874577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	151771.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.71354255699506	4.4957499509315	4.7114721411706	4.75862429897158	4.33277185023052	4.5790785984493	-0.187990412962615	0.667001486734348	0.908463623849139
Merged-chr4-132261595-4	chr4	132261103	132262103	+	969.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020273)	promoter-TSS (NM_020273)	-54.0	NM_001122992	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	6.55432943721455	6.52712582110336	6.55786025467218	6.88258533099994	6.62135585230639	6.68395135846222	0.29674424647847	0.254071161444747	0.651179145391095
Merged-chr10-111102455-4	chr10	111101984	111102984	+	914.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62318.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	6.11330068802189	6.06578572458825	6.2594686485983	5.79855403299212	5.87602828094739	5.76216615834044	-0.568909268683815	0.0542860451977232	0.299220538474573
Merged-chr8-8441195-3	chr8	8440708	8441708	+	818.044434	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	219565.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.55270022401547	2.92406501945908	2.63207303543563	2.69080809973042	2.66194006351343	2.94581236861724	0.270035790163459	0.730466009818835	0.930884711548651
Merged-chr6-134021013-4	chr6	134020501	134021501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14699.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.735719220166	3.48380773152172	3.24364049214966	3.40323407952328	3.42845047066771	3.60399981841387	-0.118795462471516	0.847602191370558	0.964318271116593
Merged-chr2-51014455-4	chr2	51013963	51014963	+	976.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	104779.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	4.3085460205944	4.51312401911009	4.55582194866215	4.6110211002152	4.31716792132585	4.54112399510929	0.0750585995524341	0.86509685168263	0.96857203435794
Merged-chr13-5592056-4	chr13	5591564	5592564	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	266028.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	5.89602197350656	6.16453725117356	5.6428891805444	5.48452508316497	5.81390145433501	5.1785081948076	-0.707855611278708	0.0588354184644001	0.31391968577017
Merged-chr9-35546931-4	chr9	35546416	35547416	+	968.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013932, exon 9 of 12)	exon (NM_013932, exon 9 of 12)	11554.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	2.98670586063692	2.78404871475638	2.99602682051967	2.81197785715372	2.97223846811288	3.12450185081304	0.231701556404186	0.741303808200365	0.934802565252866
Merged-chr9-118926271-6	chr9	118925732	118926732	+	818.422241	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133710)	promoter-TSS (NM_133710)	-304.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.43058601838851	3.60736576557093	3.48570862030218	3.38636015907666	3.19901476528533	3.01296295759507	-1.18353908196884	0.0713823350710183	0.350548745518577
Merged-chr5-108449013-5	chr5	108448506	108449506	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172883)	promoter-TSS (NM_172883)	94.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	5.38113576393277	5.71549181710855	5.59713018806063	5.62126414022723	5.53730997814468	5.45795151685392	-0.0550513562370783	0.868695393198658	0.969708434868159
Merged-chr17-5929176-4	chr17	5928630	5929630	+	851.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025664, intron 17 of 17)	intron (NM_025664, intron 17 of 17)	-12150.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	4.0485663528177	4.13681427582183	4.07543411310057	3.97403869452388	3.94153680726391	4.3195383831294	-0.0285464911565417	0.954011154167702	0.989495550016789
Merged-chr16-8832936-2	chr16	8832436	8833436	+	665.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081400, intron 2 of 3)	B2_Mm2|SINE|B2	2836.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.02229498250834	3.24600032910106	3.30225386691769	3.23213168113821	3.40824766566953	3.31767639528212	0.537732385792817	0.396529468016883	0.773652887901204
Merged-chr11-74839128-4	chr11	74838628	74839628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8204.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	9.04391495514527	9.07753072288047	8.43422901569907	8.80870491041489	9.15070679275449	8.38433516273534	-0.0868234485873975	0.765449904556784	0.942148336413151
Merged-chr11-86815881-2	chr11	86815381	86816381	+	691.583374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-8221.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	4.09499323391507	3.99526233887536	4.37296094867971	4.04764244676705	4.26940206231249	4.3983637233233	0.245559495557998	0.614640752706481	0.887545385543982
Merged-chr11-75589096-2	chr11	75588596	75589596	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008850, intron 1 of 11)	intron (NM_008850, intron 1 of 11)	1017.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	6.28353804369469	6.08464110645986	6.42114533934193	6.47270314210097	6.39697376352755	6.42618263634068	0.280008988712088	0.314344799858385	0.708700303644741
Merged-chr7-126595040-4	chr7	126594574	126595574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145636)	promoter-TSS (NM_145636)	-164.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	6.09316097983915	5.85324183199344	5.79152922182247	6.2557690156712	6.24895841509449	6.12006125391492	0.491431867683173	0.0968842693387586	0.414944733536104
Merged-chr4-107889963-5	chr4	107889418	107890418	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347160)	promoter-TSS (NM_001347160)	19.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	5.90831170422618	5.81482426512683	6.24090412797358	6.30598537652372	5.95794030310695	5.85918739806648	0.119023823606487	0.713765512381623	0.925599802465018
Merged-chr2-58978276-4	chr2	58977756	58978756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	182427.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	4.27994681747074	4.32255191479984	4.29745763986041	4.05659855496181	4.01794865140345	4.27723609759505	-0.52227700934933	0.263692277933363	0.661672520184135
Merged-chr4-125030003-4	chr4	125029503	125030503	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145552)	promoter-TSS (NM_145552)	-11.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	6.90462256237483	7.28089201167475	6.49937281908219	7.03342540713321	6.90273389773659	6.80390642790512	-0.0445700705031816	0.882541521342872	0.973184220613163
Merged-chr17-26638857-4	chr17	26638364	26639364	+	959.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-37532.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.54951183574518	4.0343561629747	4.35264929518834	3.70580763026041	3.71789505565535	3.91400356352207	-1.6579913037511	0.0018064671259117	0.028565662602216
Merged-chr17-33918380-2	chr17	33917880	33918880	+	821.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_020625, exon 2 of 2)	exon (NM_020625, exon 2 of 2)	-1098.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	3.21494924064183	2.91856922639368	3.26001766687527	2.85131221037285	3.15550515250559	3.38320316550347	0.0304673781146685	0.965863146993748	0.992130618295856
Merged-chr1-40324513-4	chr1	40324028	40325028	+	997.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133193)	promoter-TSS (NM_133193)	-61.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	5.42816367988952	5.58770241061544	5.56420568233967	5.51582104353369	5.6177641805117	5.85434641326606	0.252577320396824	0.441848808373162	0.802999352423289
Merged-chr4-109255405-4	chr4	109254868	109255868	+	969.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001285895)	TTS (NM_001285895)	19736.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	4.86893310397515	4.58423336931636	4.59901376109384	4.36480575382921	4.20617001714351	4.62549242753474	-0.736481885330307	0.0993325133907383	0.420196226447206
Merged-chr5-92525099-4	chr5	92524551	92525551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19394.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	5.67759785112447	6.12349365939556	5.71419155058221	5.93631841115475	6.13124326318121	5.80384478599123	0.191444551207672	0.562106094807684	0.86560636450104
Merged-chr6-51557429-3	chr6	51556920	51557920	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	12127.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.22394017463654	5.25239340934709	5.24870408444954	5.39285799278889	5.24349420782372	5.67748752767159	0.387141493223104	0.274744317879802	0.672159561417594
Merged-chr10-31313472-4	chr10	31312968	31313968	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	63.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	6.34163397886616	6.49489303418789	6.30877010914096	6.25280353816946	6.4019683624687	6.55035626092321	0.0221677492672877	0.936145348801997	0.986034863960057
Merged-chr15-82138772-4	chr15	82138269	82139269	+	843.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_137170, intron 5 of 5)	intron (NR_137170, intron 5 of 5)	-8500.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	2.32201296466334	2.32570434907131	2.41640356674382	2.51086881955701	2.31637326136421	2.55407895744709	0.67824379943324	0.408236657626759	1
Merged-chr14-32787647-3	chr14	32787139	32788139	+	781.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	1676.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	4.45999652827387	4.31188530039323	4.34231367882063	4.71089966938015	4.30032180632441	4.73638768521883	0.535086436759853	0.23832977365767	0.635016933187338
Merged-chr3-105058646-2	chr3	105058146	105059146	+	917.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5500.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	2.78385487661716	2.4314949086743	2.71551981866374	2.57672960104498	2.25957125892994	2.47159707436027	-1.26800240170365	0.142711851469087	1
Merged-chr10-88335741-2	chr10	88335241	88336241	+	652.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027878, intron 4 of 6)	ORR1D1|LTR|ERVL-MaLR	21334.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	5.76667577924538	5.91763279763282	6.25932520805991	5.95902490911093	6.15109489756955	6.28120645303876	0.254348661966525	0.420660130636448	0.789802348657862
Merged-chr6-21959521-2	chr6	21959021	21960021	+	967.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9906.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	5.36574396700006	5.50166922659513	5.58502431326063	5.35693704940228	5.49065315509508	5.2605731472477	-0.194138372385231	0.567340742675365	0.867924629378606
Merged-chr11-32684138-2	chr11	32683638	32684638	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001271347, intron 2 of 12)	intron (NM_001271347, intron 2 of 12)	41583.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.95464635442086	2.78839325040799	2.87096766948387	2.79818170920281	2.790450517215	3.00177877038595	-0.0564709995783217	0.936330103022583	0.986037792257163
Merged-chr9-107548266-4	chr9	107547776	107548776	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053253, intron 2 of 11)	intron (NM_053253, intron 2 of 11)	966.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	3.2653874450279	3.30958379060918	3.55142342053923	3.57343142752643	3.50574501531938	3.81774442057028	0.951547650122805	0.109798962436455	0.442923505176474
Merged-chr12-70139953-2	chr12	70139453	70140453	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14218.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	4.62970930294495	4.68478137429004	4.98521277297573	4.8842998916249	4.849610543386	4.87481249704496	0.238306959470154	0.549606479758758	0.860377701498819
Merged-chr19-3851770-4	chr19	3851271	3852271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-2.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	8.33197632168901	8.40988543616239	7.73751153875837	8.13400377232266	8.32844072648612	7.83906534097607	-0.111120079916087	0.688269579072359	0.917193226920892
Merged-chr11-109362737-4	chr11	109362263	109363263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010303)	promoter-TSS (NM_010303)	-31.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	9.12515971805455	9.16832280208632	8.71074749596805	8.90423043124769	9.21818867298757	8.64432657077776	-0.0980374999047267	0.698593058223944	0.920392761604545
Merged-chr18-62104718-2	chr18	62104218	62105218	+	827.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75263.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.34248472148417	3.23059622873354	3.34807321895233	3.61946026318704	3.40162035212721	3.36275106003695	0.62267060386203	0.300569619967929	0.697311691851564
Merged-chr6-21950877-2	chr6	21950377	21951377	+	664.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001311061, intron 2 of 11)	intron (NM_001311061, intron 2 of 11)	1262.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	7.66105375960161	8.01087463515218	7.23556170467652	7.61556044406932	8.05687109382049	7.41369822090322	0.0708085842663493	0.817835989250741	0.956835450074313
Merged-chr9-99130687-3	chr9	99130162	99131162	+	857.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	MIR|SINE|MIR	9549.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	3.86017163965439	3.95784777314111	3.96632607494047	3.75463559624538	3.86204707351624	3.78570357909928	-0.387477615528581	0.450170888048976	0.808173357988092
Merged-chr10-26828566-4	chr10	26828072	26829072	+	990.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176837, intron 1 of 14)	L3b|LINE|CR1	56060.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	5.11698335632227	4.99313766555092	4.98821761507451	4.35851305962457	4.45438185042863	4.68384201556142	-1.25652428794677	0.00207811730001435	0.0318445643277337
Merged-chr4-107879751-4	chr4	107879266	107880266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001282737)	promoter-TSS (NM_001282737)	11.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	7.11009016660666	7.58754143868615	7.18474967808278	7.49542991974592	7.36702356398835	7.08771174953864	0.0221090523085619	0.935268151236937	0.985837609291391
Merged-chr6-129393412-1	chr6	129392912	129393912	+	842.0	f0_balb.idr	Intergenic	Intergenic	-3885.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	3.51350474992582	3.57416577716191	3.63365023192136	3.60204024392114	3.40373180610662	3.54510157588089	-0.204756866137893	0.718092695581901	0.927278280785923
Merged-chr8-36122777-6	chr8	36122264	36123264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27936.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	7.12308251322507	7.30847038018102	7.0103512760607	6.62804944348541	6.88948305472157	7.23982440426651	-0.335654875070837	0.230755241638885	0.626470101676672
Merged-chr9-66346073-2	chr9	66345573	66346573	+	795.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4377.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	4.9805722052085	5.2121034694202	5.07780577457735	5.38277660559162	5.5439498761546	5.49111085869261	0.758915491291293	0.030035532038367	0.209137786598196
Merged-chr6-29785967-4	chr6	29785472	29786472	+	952.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	L1M2|LINE|L1	17529.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.21258617145428	5.23606711885373	5.09063076535817	5.03745641405471	4.98221874825104	4.7757983057224	-0.510241034933656	0.170434256225959	0.547799648872436
Merged-chr1-106200060-6	chr1	106199571	106200571	+	821.888916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	28202.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	4.32473819957969	4.39010849581764	4.14796883650218	4.0078013159246	4.23161490126811	4.01772124485061	-0.550489059470729	0.253202532124247	0.650602979742283
Merged-chr6-140817030-4	chr6	140816527	140817527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L4_A_Mam|LINE|RTE-X	190142.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.49727841745664	3.68071792617984	3.77394368742262	3.49058705198529	3.5317732757611	3.64359295247805	-0.345077111536936	0.540363676629224	0.85632302227606
Merged-chr2-166745985-4	chr2	166745482	166746482	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32150.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.50040703903156	5.50133136473111	5.67439255338277	6.11644508997974	5.90599431199122	5.864919508862	0.751739883274492	0.016000191563952	0.138918539481293
Merged-chr1-60977872-4	chr1	60977377	60978377	+	911.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_017480)	promoter-TSS (NM_017480)	-37.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.31531989922844	5.14940829180254	5.11572276263807	5.50658501729509	5.50824669767781	5.49908354013416	0.596873435899769	0.0791279153938138	0.371786244759768
Merged-chr3-127487438-3	chr3	127486949	127487949	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	11666.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	3.68966700134282	3.71553427835629	4.12642485899986	5.56822749309394	5.76700193360533	5.24808454596445	4.83995072484723	1.75802700331662e-16	6.47265092442341e-14
Merged-chr1-165675296-4	chr1	165674803	165675803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	32791.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	7.17801140123885	6.57079253742887	6.71232599150907	6.92276854346435	6.6834456193992	6.84825298381892	-0.053330378034596	0.855597957640094	0.966244542232428
Merged-chr17-47395643-5	chr17	47395104	47396104	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008189, exon 2 of 4)	exon (NM_008189, exon 2 of 4)	5002.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	6.3069831082149	6.25178917953989	6.32484722603557	6.86907923284699	7.0266429954356	6.67570595751788	0.927130802876845	0.000502253447791429	0.0105294796885435
Merged-chr2-124725566-2	chr2	124725066	124726066	+	837.400024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	71985.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.80411230854558	2.69703551814636	2.95974121351883	2.94348308675732	2.73578742548591	2.85363653986678	0.127411952883663	0.859495490549918	0.967346590438079
Merged-chr10-84390933-3	chr10	84390441	84391441	+	953.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49530.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	5.67833673044985	5.64123898369302	5.17790046744836	5.81749901647619	5.74172828639659	5.54364186778778	0.329042367838883	0.347297159983554	0.735446570328342
Merged-chr3-65391790-1	chr3	65391290	65392290	+	799.25	f0_balb.idr	intron (NM_026155, intron 1 of 4)	intron (NM_026155, intron 1 of 4)	763.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	7.21545636068447	7.31871632161691	7.04694558020433	7.18433207200503	7.28697442050797	6.96530202782677	-0.0654522810932406	0.793231944589264	0.950312844775479
Merged-chr7-25788347-2	chr7	25787847	25788847	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 1 of 19)	intron (NM_009465, intron 1 of 19)	386.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	6.84875449468738	6.54069251294617	6.78555021178981	7.13287204859503	6.84116802933517	6.70168898460881	0.278489373233364	0.310634220748364	0.705996892737972
Merged-chr12-76948903-4	chr12	76948435	76949435	+	960.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	13313.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.38366577301403	4.41601680855228	4.39649464390241	4.62011835941113	4.37514841277495	4.74349128446677	0.447560060041859	0.306769876533724	0.703032606770358
Merged-chr15-62108312-1	chr15	62107812	62108812	+	901.0	f0_balb.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	69055.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	3.7094278081086	3.49450037985191	3.49178405306702	3.58369900612814	3.37133421476635	3.7712858190321	0.0172796158766865	0.976531292122636	0.994723308989508
Merged-chr5-114691058-4	chr5	114690586	114691586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-151.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	6.81024584732784	6.99727799108369	7.23663668485819	7.04747478660421	6.97444525365542	7.29402750674628	0.131622602985814	0.618848809920666	0.889515655407396
Merged-chr14-121426030-2	chr14	121425530	121426530	+	916.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10B|LTR|ERVL	-46800.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.28785694215556	3.26857565099719	3.58867918941433	3.66373831330511	3.49261317692905	3.60706816871742	0.768352435716868	0.195352639242669	0.583020169139918
Merged-chr1-53777463-1	chr1	53776963	53777963	+	629.0	f0_balb.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	7752.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	5.80114879749741	5.9094341525482	5.99429521985925	5.84201675407384	6.03093377433184	6.22151143105052	0.236183836502229	0.438523514776126	0.800615097962194
Merged-chr4-95050777-4	chr4	95050297	95051297	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010591, exon 1 of 1)	exon (NM_010591, exon 1 of 1)	1425.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	7.82658881290123	8.18433931976856	7.79385376424795	7.74437563250971	8.09928979267527	7.87518767278629	-0.0478728876257576	0.845977108205255	0.963945177091542
Merged-chr16-91411023-4	chr16	91410518	91411518	+	986.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008349, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	4783.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	6.56394632185064	6.42787715719635	6.5716011148796	6.64122944623196	6.73786823830266	6.33218440556741	0.117984896621191	0.668827677133418	0.909385924601941
Merged-chr6-32479873-4	chr6	32479318	32480318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31323.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	7.58679540391945	7.79337913765575	7.33977055130505	7.46068551285478	7.85754983516849	7.06224481390725	-0.113525974072368	0.702260147222895	0.921841079228287
Merged-chr3-97211410-4	chr3	97210905	97211905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029933, intron 7 of 9)	intron (NM_029933, intron 7 of 9)	15959.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.82431160520194	6.18578660014092	5.99047113562858	6.11085834571136	6.33462078550677	6.20521394416538	0.360893879841259	0.229101585196461	0.62456866198241
Merged-chr14-70066170-4	chr14	70065663	70066663	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11282.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	6.94836993462761	6.59892885342405	6.68429196546882	6.88618189417711	6.90099109949469	6.71050802749995	0.131876924070935	0.61883165723822	0.889515655407396
Merged-chr16-11014728-4	chr16	11014228	11015228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5830.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	5.77520024166949	5.64281650069089	5.51780652418912	5.60812864158664	5.74980452442773	5.74657193985144	0.0855764651004579	0.787788109393022	0.94877064431094
Merged-chr3-35931494-2	chr3	35931003	35932003	+	620.5	f0_balb.idr|f0_c57.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	831.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	5.79349793781082	5.70252358614344	5.79249963397837	5.84337208121912	6.02447277960769	5.57952873304745	0.146833478562721	0.646775262559697	0.901138226872746
Merged-chr14-74797669-3	chr14	74797212	74798212	+	862.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033439, intron 13 of 19)	intron (NM_001033439, intron 13 of 19)	65415.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	2.81792296254093	2.74210334731876	2.88181339187082	2.79608992950398	2.71821365483835	2.89482922083716	-0.0611392952651957	0.931607312622207	0.984929477721491
Merged-chr10-121378111-2	chr10	121377611	121378611	+	715.6875	f1_balb.idr|f1_c57bl6.idr	exon (NM_029364, exon 6 of 14)	exon (NM_029364, exon 6 of 14)	13021.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	3.63242008299755	3.43348429690005	3.72720826708897	3.78105896690856	3.28314494039744	3.74698893454314	0.0647493372730697	0.915098884478812	0.980959026698783
Merged-chr13-93718253-3	chr13	93717761	93718761	+	945.6222529999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028772, intron 13 of 15)	MTE2a|LTR|ERVL-MaLR	914.0	NR_045086	105364.0	Mm.443795	NR_045086	ENSMUSG00000087334	AW495222	-	expressed sequence AW495222	ncRNA	3.16505283662471	3.35289540920028	3.54839040843414	4.15190335247636	3.85545406457263	4.32598334995095	2.69557539686757	1.68221390488361e-05	0.000628530105961184
Merged-chr17-43569500-4	chr17	43568991	43569991	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1040.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	7.82724148299852	7.91268860668453	7.74338972402343	7.18784582466937	6.94451641822331	7.41526349882847	-0.947023835349622	0.000119407984896566	0.00329557896083567
Merged-chr12-8508472-1	chr12	8507972	8508972	+	541.0	f0_c57.idr	Intergenic	RLTR28|LTR|ERVL	-8463.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	3.77231080297598	3.80794736487531	4.2244891733618	4.53807086525872	4.87952135396023	4.59335983886273	2.05391400545867	3.53636339648183e-05	0.00118269182272693
Merged-chr16-29606842-3	chr16	29606327	29607327	+	845.3444820000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27493.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	5.43154032121922	5.16956615217652	5.29365254917158	5.37470253173487	4.90345872775002	4.9798624531026	-0.408250696042803	0.285779002057241	0.683240131512535
Merged-chr8-86884265-4	chr8	86883755	86884755	+	849.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	1003.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.00931799256886	6.10329444430805	5.94766309212267	5.9570616849994	5.99442764278482	6.07713729628976	-0.0332811192227433	0.908490394053479	0.979260451489756
Merged-chr8-72350924-3	chr8	72350436	72351436	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31874.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.46684536601533	5.88200824076202	5.65430807800115	5.44113516568613	5.30885747104587	5.60943515993797	-0.440184904379337	0.200807552703545	0.590111109711357
Merged-chr7-80019344-2	chr7	80018844	80019844	+	988.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5470.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	5.64067679859628	5.32651236442999	6.05827039131427	5.85623629630732	5.99066363219347	5.82628698034788	0.360027288407885	0.307853297609718	0.703908694626807
Merged-chr11-32608383-3	chr11	32607897	32608897	+	635.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 12 of 18)	intron (NM_009288, intron 12 of 18)	-34158.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.36393783856299	3.46548045648468	3.66536501378436	3.50130475091075	3.26837409511883	3.47688076466029	-0.312313493800883	0.601480625479122	0.881943853341137
Merged-chr12-111458021-2	chr12	111457568	111458568	+	853.650024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15407.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	3.39497678623472	3.42827468141622	3.5063589551363	3.70457363746211	3.71695817878265	3.78584643123483	1.04742914945808	0.0605627529782676	0.31867375766048
Merged-chr8-94485476-2	chr8	94484974	94485974	+	854.466675	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033207, intron 11 of 48)	B3A|SINE|B2	12711.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	3.6298180635525	3.89299133278157	3.96368339259832	4.14304871065476	4.11462208377604	4.21680474574783	0.974581018367324	0.0554555816077217	0.302812047014811
Merged-chr9-96723861-4	chr9	96723364	96724364	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	-4014.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	3.59809830022758	3.80246085308794	3.48018705974665	3.45577559571447	3.67156004132799	3.31230958101266	-0.497582370527265	0.414386946041223	0.785805817831719
Merged-chr11-115412859-4	chr11	115412377	115413377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001347645)	TTS (NM_001347645)	7042.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	7.37073799487098	7.44858785273488	7.36185722575923	7.03250241640495	7.5369990243704	7.57926508628686	0.0162723346587201	0.950317013923827	0.988425934178221
Merged-chr11-117332391-4	chr11	117331875	117332875	+	875.333374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	62.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.08183938016143	5.17541595991486	5.51129230413571	4.8310422453465	4.68068065099397	5.01129845368228	-0.90350436848047	0.0216469806733013	0.17021375617691
Merged-chr1-165660942-3	chr1	165660444	165661444	+	870.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26403.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.68381372332185	5.6393510172639	5.63943471406551	5.54114132175377	5.93017635379625	5.70176738564544	0.162515486411405	0.616224811148063	0.888321998683461
Merged-chr14-31389256-2	chr14	31388756	31389756	+	993.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 2 of 7)	MER33|DNA|hAT-Charlie	28421.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.70334996116109	7.76535692496722	7.61363824463136	7.41842072139388	7.79849194965593	7.34734951600465	-0.217458455363445	0.380129817670781	0.762308048682461
Merged-chr10-19584309-4	chr10	19583809	19584809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7640.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.14182369349609	5.97815773313875	6.11706005238312	6.07687118234814	6.06696445355639	6.17731743253431	0.0434698262305269	0.879043158573704	0.972074795996392
Merged-chr19-16046048-4	chr19	16045542	16046542	+	903.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60967.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.81862101168071	3.77927718689645	3.72856940643231	4.58956295085585	4.07114230911827	4.34691510554231	1.66877114415689	0.00145127810181768	0.0241419328860546
Merged-chr10-89747668-4	chr10	89747107	89748107	+	962.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	2616.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	3.89827916556809	3.49988541037306	3.43747680485045	3.56668929505399	3.68626882491181	3.83311534501014	0.206058200699515	0.726955558473297	0.930086065338964
Merged-chr9-59727621-4	chr9	59727126	59728126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	19862.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	7.66571086754698	7.54672190481121	7.41088534780683	7.65592090593247	7.68802326390666	7.41320465725688	0.0694740834763431	0.767116556343461	0.942573703853445
Merged-chr10-13866926-4	chr10	13866381	13867381	+	905.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	2076.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	5.57673266405258	5.61412115240972	5.83309468743842	6.2502967829041	6.7869770109837	5.84346575597839	1.1926996536707	0.000944186307645335	0.0172139638495449
Merged-chr12-40560913-2	chr12	40560413	40561413	+	932.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	Lx4A|LINE|L1	114860.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.90691812627548	4.68200371526325	4.63002559640973	4.67679338386747	4.72066399596201	4.69690097237758	-0.121124546041572	0.765022116351534	0.942123616786297
Merged-chr6-97296537-1	chr6	97296037	97297037	+	868.0	f1_c57bl6.idr	intron (NM_145148, intron 21 of 23)	B4A|SINE|B4	-43757.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	3.04734594829045	3.09933692538427	3.50783259345617	3.34794068323825	3.11969273763822	3.37081938586305	0.219192065410002	0.740462332020832	0.934528157499283
Merged-chr17-63850290-2	chr17	63849790	63850790	+	673.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13691.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	2.85512159366865	2.81197924805575	2.99434252285447	3.11215090777559	2.76131143425502	3.1242062066122	0.564079799420151	0.428499956594568	0.795368392855003
Merged-chr15-79346168-2	chr15	79345668	79346668	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001304830)	promoter-TSS (NM_001304830)	-453.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	3.10454766216401	2.96447980794068	2.9361744310854	3.02782743729985	3.2183324682987	3.35553592735045	0.866757408186885	0.197558135267594	0.585664005962161
Merged-chr10-81400727-2	chr10	81400227	81401227	+	946.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_008688, exon 10 of 10)	3' UTR (NM_008688, exon 10 of 10)	7663.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	5.41520565156779	5.39623298719429	4.81271093908832	4.78062823264678	4.90652141155153	4.41553424924284	-1.10820857458847	0.0133149850995033	0.122638175798037
Merged-chr9-45202549-4	chr9	45202050	45203050	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1525.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	3.52374136192417	3.53120512409474	3.53482908705911	3.31566134070665	3.28583747107783	3.70556438137164	-0.332787678576927	0.580238006357668	0.87276422265422
Merged-chr17-24697053-1	chr17	24696553	24697553	+	576.0	f1_balb.idr	promoter-TSS (NM_023040)	promoter-TSS (NM_023040)	819.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	3.62170110808676	3.82970900708434	3.95943160347329	3.30033322083141	3.42860649997809	3.84447752410707	-0.924754618988529	0.127499112515668	0.477271790294292
Merged-chr8-71507802-4	chr8	71507291	71508291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_032398, exon 3 of 6)	exon (NM_032398, exon 3 of 6)	3978.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	4.28647590216408	3.86992545772527	3.91283824405334	4.12831055083772	4.15729902878038	4.03487382785374	0.193850095385588	0.703239004195808	0.922108924938678
Merged-chr8-85555332-4	chr8	85554825	85555825	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019794)	promoter-TSS (NM_019794)	-54.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	8.79568461851362	8.92388626966989	8.38451077551561	8.81609302641415	8.83323040498944	8.62410140898541	0.0490083398500592	0.834853900488166	0.96138272464184
Merged-chr17-35259436-5	chr17	35259018	35260018	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3576.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	7.47481903844654	6.81620604657054	7.23951163092005	6.52467224086059	6.54316203471492	6.88411936211823	-0.847906311109114	0.00440787627492863	0.0560211652794045
Merged-chr19-42001801-4	chr19	42001317	42002317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	20054.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	7.47529911966143	7.41964011973041	7.4619572292029	7.47044203169752	7.58260647394833	7.40315539344249	0.0596528355642364	0.79035126363191	0.94939363848596
Merged-chr11-119954445-4	chr11	119953940	119954940	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11348.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	6.3008869880012	6.10026571904601	6.04783552337387	5.8989168088508	6.05932353047198	5.51582453105166	-0.512487332021183	0.116115054702125	0.455053761852599
Merged-chr2-181286149-2	chr2	181285649	181286649	+	560.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 1 of 9)	MT2B|LTR|ERVL	1817.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	3.22962808179838	3.5321426417092	3.29854861672295	3.52453575070691	3.40837192283147	3.37075310497255	0.276829615936495	0.650332716543547	0.902576889668442
Merged-chr2-101679380-4	chr2	101678916	101679916	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303273, intron 1 of 6)	intron (NM_001303273, intron 1 of 6)	996.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.97483764819688	4.88644711816012	4.65768083939667	4.90674752439431	4.98675201562939	4.99664677620145	0.235219442798171	0.544610535036738	0.85785051394864
Merged-chr15-77627008-2	chr15	77626508	77627508	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16278.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	5.05987549901547	5.323157584691	4.42516174947153	4.58374690286258	4.43177957630649	4.72035826185794	-0.95634111530096	0.0416158588881315	0.255065732643168
Merged-chr6-115367006-4	chr6	115366508	115367508	+	899.662476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	4659.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.08957520904076	4.72327364628037	4.63579815631556	4.82337079293656	4.88585011367377	4.61699904815484	-0.116911696993879	0.781145759474112	0.946170623764308
Merged-chr15-63997135-2	chr15	63996635	63997635	+	733.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	931.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.82686036867708	5.60095046869152	5.67058989749954	5.6721412763131	5.53549371527509	5.8811012343873	-0.0219629082680881	0.946100217807882	0.98796006280508
Merged-chr2-80025195-4	chr2	80024697	80025697	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13705.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	6.94664698261976	7.11061682550333	7.15897913190035	7.09231623859492	7.17817836878684	7.10525170075404	0.0851256885251235	0.721864264013212	0.928606209603791
Merged-chr11-83067770-1	chr11	83067270	83068270	+	842.6666869999999	f0_balb.idr	intron (NM_011408, intron 1 of 1)	MTC|LTR|ERVL-MaLR	2658.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	6.3596159205964	5.92599006639704	6.42451266879983	6.32990403519533	6.29441564237434	6.29746165272879	0.0991652173964349	0.741138813658702	0.934742147011145
Merged-chr1-134315398-2	chr1	134314898	134315898	+	566.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 17 of 28)	intron (NM_001144855, intron 17 of 28)	17530.0	NM_001144855	68507.0	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	2.14975807012444	2.17835912220101	2.34448176135798	2.06848450226304	1.91475029202852	2.02459559005453	-1.80983507279803	0.0628054300882482	1
Merged-chr11-70017776-2	chr11	70017276	70018276	+	695.875	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-829.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	3.76718892538494	3.80207804474745	4.26477592475394	4.09690791892938	3.8423467473629	3.77160222189437	-0.127307706370587	0.816400485697528	0.956664796338092
Merged-chr14-67932772-3	chr14	67932248	67933248	+	979.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	824.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	4.42004857230546	4.507342581752	4.47224721834622	4.46422615431358	4.31410554006937	4.27225959099544	-0.290411510425546	0.507100354172806	0.838829594648539
Merged-chr7-5125943-4	chr7	5125437	5126437	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009028)	promoter-TSS (NM_009028)	13.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	7.18974794902654	7.54417926950252	6.72253827037134	7.30274546397244	7.29959199559348	6.83216730599197	-0.0550793983764958	0.860815816009245	0.9676427717189
Merged-chr2-14055794-3	chr2	14055292	14056292	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013935, exon 1 of 7)	exon (NM_013935, exon 1 of 7)	243.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	3.76100184976748	3.75506727943929	3.9662936683042	3.69871749469531	3.49275154999378	3.4059416889635	-0.975481908634946	0.0869899427998584	0.390918197208789
Merged-chr17-43327484-4	chr17	43326984	43327984	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32947.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	5.94755607111984	6.15502529113878	5.91867963648768	6.36785535689553	6.55058203092645	6.05410433823993	0.564443450336919	0.0651696204553204	0.332860707068093
Merged-chr3-21986385-4	chr3	21985890	21986890	+	885.19165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-90262.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.03372388576491	4.11663797416977	3.88352471418281	4.03685849520578	4.21889002577885	3.84657991024813	0.096993320364807	0.849598472096088	0.964686793473289
Merged-chr9-108558315-2	chr9	108557815	108558815	+	639.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_175143, intron 9 of 9)	RMER17C|LTR|ERVK	-2186.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	3.83056149927921	3.73708643626888	3.82630246871195	4.16378693122343	4.22524012413826	4.36145829804268	1.34855149273368	0.00659947590397072	0.0748767613424033
Merged-chr4-145585279-3	chr4	145584810	145585810	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001324416, exon 1 of 4)	5' UTR (NM_001324416, exon 1 of 4)	110.0	NM_001324416	433801.0	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	-	predicted gene 13212	protein-coding	3.5775591713819	3.69656908458974	3.86921122724907	4.82151573970831	4.67158842225923	4.43572420727029	2.79751643381552	8.61659865194109e-08	6.26721976075799e-06
Merged-chr12-3843056-2	chr12	3842556	3843556	+	642.333313	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 2 of 22)	PB1D11|SINE|Alu	19188.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.9747954765639	4.55799767357337	5.37927465641989	4.97639744644614	4.70000345997455	4.80654332148694	-0.378059086703829	0.397623864337242	0.774563654542274
Merged-chr12-86242364-3	chr12	86241842	86242842	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	484.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	8.54552984424631	9.03749760222168	8.60793798873068	8.78191080743936	9.16116071806646	8.52376963707119	0.14051541159051	0.59837594791765	0.880780437003557
Merged-chr5-121438705-2	chr5	121438205	121439205	+	646.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172722, intron 21 of 23)	intron (NM_172722, intron 21 of 23)	13769.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	3.38702246809515	3.30092654754392	3.39720201494244	3.49522849146935	3.33427852296707	3.7740662043693	0.661113386133465	0.274077381150845	0.671556325112809
Merged-chr8-25754418-4	chr8	25753905	25754905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028102)	promoter-TSS (NM_028102)	8.0	NM_001361595	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	6.39930990726312	6.32589829757121	6.04303418808949	5.96444939367596	5.42475081089084	5.41171607001428	-1.12054276472118	0.00111963631857933	0.0196545778051369
Merged-chr19-17278579-4	chr19	17278097	17279097	+	996.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60908.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.06003256726417	3.13432997110979	2.95926116066612	3.28012553489439	3.39707875782899	3.4444631187972	1.33307879297791	0.0411627408190935	0.253296061091194
Merged-chr5-21136738-4	chr5	21136247	21137247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39532.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	5.26554116717802	5.1008929407105	5.38052084728321	5.11345861249151	5.16665963909871	5.44236596675237	-0.0145243380027373	0.968011483451803	0.992646309787137
Merged-chr9-63134034-2	chr9	63133534	63134534	+	773.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12946.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	3.32693507595054	3.0541709764382	3.18513358285835	3.32745508655472	3.16798481060691	3.01180008113491	-0.0656724665388546	0.920984607097257	0.982478040863443
Merged-chr7-139224944-4	chr7	139224427	139225427	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-11620.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	5.31965011128232	5.41317527484612	4.97434093906231	5.88835292138366	5.87481264616187	5.23637933430364	0.855248694586417	0.0284367172945687	0.201878806167816
Merged-chr11-80043064-4	chr11	80042628	80043628	+	772.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	37863.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	6.3524964368091	6.29395891861401	6.1941651373725	6.39328226756159	6.44398798977137	6.21179019564793	0.123830975437174	0.65399632997743	0.903623868780893
Merged-chr3-95284515-2	chr3	95284015	95285015	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133858, intron 1 of 9)	intron (NM_133858, intron 1 of 9)	1580.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	2.71025062802293	2.70311345364453	2.93912424929076	2.69457212945839	2.6526016750182	3.12080813684115	0.244733019485204	0.747369170239661	0.936600911319824
Merged-chr15-78606388-2	chr15	78605888	78606888	+	786.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_028195, intron 4 of 12)	intron (NM_028195, intron 4 of 12)	9341.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.78668527526009	4.99842085762566	5.40046654280464	5.4304030313234	4.97751764689536	5.16164212335767	0.260233867096722	0.525429068796913	0.848999112257332
Merged-chr6-32158463-3	chr6	32157966	32158966	+	715.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175750, intron 29 of 31)	intron (NM_175750, intron 29 of 31)	108178.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	2.18198071679983	2.21914396184901	2.39172836459174	2.27452086855649	2.14961534203079	2.20815227620284	-0.372148717693226	0.667327298850321	1
Merged-chr10-127576516-4	chr10	127576009	127577009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 24 of 89)	exon (NM_008512, exon 24 of 89)	-41950.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.13833750285336	5.0737652635093	5.25999668107227	5.10051924396218	5.12398720052296	5.09588452576414	-0.093838371452078	0.792785227280117	0.950051439909475
Merged-chr1-156437980-3	chr1	156437482	156438482	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 10 of 15)	intron (NM_009230, intron 10 of 15)	-17067.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	6.21153549457591	6.0732453765613	6.27702171237901	6.38316646431213	6.39160475362853	6.57007150709692	0.431648285027111	0.118436038578132	0.459921210483695
Merged-chr4-40853173-4	chr4	40852680	40853680	+	985.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1357.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	7.79243119600227	7.99234023230665	7.65165370503542	8.28418758307858	8.44897088579022	7.9040810008261	0.587001290988451	0.0196227942864162	0.159395572754775
Merged-chr16-55967044-4	chr16	55966544	55967544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024218, intron 2 of 5)	intron (NM_024218, intron 2 of 5)	769.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	7.15582310077845	7.39746335397767	6.99607224710089	7.0048982441041	7.11230303661011	6.95549722451807	-0.259198828593448	0.306972259043589	0.703099001056797
Merged-chr2-129626071-4	chr2	129625573	129626573	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	30611.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.5585831694452	4.51840707758351	4.41207494234857	4.24642607222479	4.48222000765381	4.86252165473201	0.110091571050888	0.810417887065191	0.955045521890034
Merged-chr5-135914395-4	chr5	135913898	135914898	+	960.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	20243.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	7.29931742194667	7.33962580417875	7.09871182381608	6.7121413919391	6.73150619609564	6.60183922424007	-0.869073678669475	0.000449234072969316	0.00965638562222445
Merged-chr14-50836371-2	chr14	50835871	50836871	+	710.166687	f1_balb.idr|f1_c57bl6.idr	exon (NM_009351, exon 40 of 55)	exon (NM_009351, exon 40 of 55)	28455.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	4.52391295487239	4.65845614732746	4.99104206943943	5.31288635901906	5.50175305026402	5.40466488993267	1.464620142577	0.000142405225897623	0.00380271310542021
Merged-chr15-38660247-4	chr15	38659730	38660730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1674.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	5.68558245822625	5.81674753468324	5.56011809231026	5.61138199056384	5.47262943048419	5.70464701933748	-0.201565158503648	0.532727359720652	0.851971173271146
Merged-chr4-101217339-4	chr4	101216808	101217808	+	818.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	47974.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	5.589678297253	5.23720922958507	5.89729830274467	5.4914072786247	5.25261216568693	5.55192895819149	-0.310462984719919	0.405409982211671	0.780134157220244
Merged-chr11-77694206-2	chr11	77693706	77694706	+	775.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001024205, intron 2 of 3)	intron (NM_001024205, intron 2 of 3)	8067.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	3.60066512908575	3.46004563324531	3.33977607202699	3.37733931155761	3.23803363649094	3.67915391388224	-0.145449894913394	0.813797610996075	0.955940138311315
Merged-chr3-144700937-2	chr3	144700437	144701437	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 6 of 10)	B4A|SINE|B4	19398.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.27037078559645	5.59408863496065	5.76601262256512	5.39027480856973	5.73057826697367	5.48188212672696	-0.000927498246177162	0.997921941270866	0.999579683478894
Merged-chr18-75904458-3	chr18	75903941	75904941	+	766.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84263.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.95099422280339	4.07787427383693	4.22521318388205	5.30580373494301	5.4924885546405	5.2811589711087	3.17318365679461	1.43576388722442e-12	2.68465261861056e-10
Merged-chr7-25686307-2	chr7	25685807	25686807	+	951.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	-695.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	4.35299640742018	4.35755568435178	4.5177468243782	4.21175510318588	3.81807607226343	4.50564871806743	-0.564205616278815	0.267447306385554	0.664707245929906
Merged-chr11-101657912-4	chr11	101657416	101658416	+	979.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7625.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	7.91959374361266	7.86447136934248	7.49428699944867	7.9236888054772	8.04893282635589	7.24410207323873	0.0247332769643289	0.933254935820388	0.985372831090422
Merged-chr6-83838398-4	chr6	83837891	83838891	+	773.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6650.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	3.7230360451175	3.82677977539888	3.64403060269439	3.63712589246392	3.63695400243369	3.71456851074216	-0.261136795668096	0.628574805520451	0.893783616313365
Merged-chr2-20722904-2	chr2	20722404	20723404	+	753.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177630, intron 5 of 17)	intron (NM_001177630, intron 5 of 17)	203391.0	NM_001177631	208618.0	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	2.91804585337958	3.36451494819242	3.01300543731689	2.72268782457812	2.7289574087123	2.63206017686729	-2.16957686162093	0.0067741660151765	0.0763152999987552
Merged-chr2-116978402-4	chr2	116977900	116978900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	78248.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.64071125800731	6.21320872568448	6.51578775118789	6.6268991549168	6.70284641049528	6.5039090605139	0.243810690155481	0.387073224156401	0.767450349932227
Merged-chr13-85283994-4	chr13	85283510	85284510	+	980.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145452, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	5476.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	3.06016297530778	3.0565622853205	2.89364700958117	2.88006157706533	2.89387965162367	3.02690288359707	-0.372689681404361	0.586361047199166	0.875513359293755
Merged-chr1-131470767-4	chr1	131470229	131471229	+	843.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	56632.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	5.23195088076644	5.00888974660829	5.31432256164373	5.16739697001829	5.0151487063088	5.31749063646395	-0.0452137827577266	0.902369609249293	0.977470161380136
Merged-chr3-136852666-2	chr3	136852166	136853166	+	997.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	182600.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	2.78826334878633	2.74570236584554	2.88282849619386	2.79849430945596	3.01412601974321	2.63754977479145	0.146626765753899	0.845132489297519	0.963760118842549
Merged-chr9-57555855-2	chr9	57555355	57556355	+	876.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-3103.0	NM_025837	110119.0	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	4.85568158947546	4.59059075496313	5.28054314338296	4.98605662087725	4.94643482802285	5.10033391208053	0.178183112324912	0.670806653723218	0.910175626534126
Merged-chr16-90199220-7	chr16	90198639	90199639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-21603.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	8.05955278523503	7.86348270960728	7.60148831641304	7.85940594034528	7.97087247708939	7.61872473478404	-0.0441885728570979	0.85830818178306	0.966883574654742
Merged-chr6-124807797-2	chr6	124807297	124808297	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306050)	promoter-TSS (NM_001306050)	-864.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	4.2494121756241	4.12620081393459	4.1537357060305	3.96954935728087	4.24175413508083	4.02905744940399	-0.237381213173939	0.624251892550477	0.891935778467452
Merged-chr12-112976957-2	chr12	112976457	112977457	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145900, exon 2 of 5)	exon (NM_001145900, exon 2 of 5)	394.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	4.40404781756396	4.25745346820774	4.5665411950957	4.2250129549941	4.03761429898091	4.39316897893851	-0.515296619645149	0.272409784314066	0.669663338532819
Merged-chr1-190911772-4	chr1	190911268	190912268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178775)	promoter-TSS (NM_178775)	2.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.54602751213795	6.66881478356967	6.55481252644518	6.0786612081647	6.12702777643732	6.32512014896497	-0.688930248240726	0.0115533329934982	0.111342336312601
Merged-chr11-77443867-3	chr11	77443369	77444369	+	871.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-20044.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.99309964738107	4.96271719642429	4.97017780738386	4.78822203439081	5.40582253456521	4.67596091379314	0.0927853858838356	0.830985306463896	0.960370002015736
Merged-chr2-128767250-2	chr2	128766750	128767750	+	942.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-51053.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.17171080949717	4.25139623464628	4.29773567260773	4.15720593799835	3.8418449669128	4.52494896751953	-0.127058132993927	0.804456466851112	0.953651704501661
Merged-chr6-37143171-3	chr6	37142679	37143679	+	807.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156797.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	5.27549342185851	5.32251977713632	5.39340722412678	5.60474497541872	6.00579752684981	5.71233886724204	0.880113608374759	0.00869766294242677	0.0914128000648537
Merged-chr11-118154740-2	chr11	118154240	118155240	+	808.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-25521.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.0054481245806	4.20378800875927	4.01803127871963	3.45029321917691	3.41440953622064	3.74022630610706	-1.87124440651053	0.000925378779748709	0.0169414559967724
Merged-chr14-31158272-2	chr14	31157772	31158772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 18 of 68)	RMER17C|LTR|ERVK	10369.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	3.15634465234772	2.74964523796546	3.40172520488946	3.0314587266671	2.86568551227748	3.09611701128591	-0.560625793949807	0.448147330762456	0.807085901041859
Merged-chr10-11323758-3	chr10	11323256	11324256	+	996.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19689.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	3.01370812389021	3.00755752655036	2.60951511775868	2.80238657830236	2.79458062091192	3.00513048192885	-0.124703144782291	0.871667770370877	0.970247743403815
Merged-chr8-105375239-3	chr8	105374742	105375742	+	885.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-139.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	3.53756254541882	3.448916194277	3.22122528877474	3.52448239253904	3.71778111579231	3.79530148275881	0.948001663374208	0.116371070076718	0.455520722535803
Merged-chr16-25009433-4	chr16	25008933	25009933	+	848.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-50206.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.75735648523811	4.14695030024234	4.35685354370131	4.52065886257526	4.36355312941717	4.85624723064925	0.336466255465503	0.492452822606528	0.831055337351315
Merged-chr15-38284069-4	chr15	38283565	38284565	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	15835.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.62909948202238	3.69236322130971	3.73867429800784	3.6766548923028	3.87672808444408	3.90619477637641	0.457492361368427	0.390258051112386	0.769547406615622
Merged-chr18-54961478-4	chr18	54960962	54961962	+	937.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	28718.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.94541937119968	3.78937018844973	3.70108808095145	3.749369735295	3.60045464281594	3.43053629777463	-0.733443646104041	0.195342187789024	0.583020169139918
Merged-chr15-5116513-4	chr15	5116012	5117012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-101.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	6.89493230610205	7.21064204328924	6.77199531971749	7.11228036178325	6.89050635897317	6.47504909686245	-0.181272414242553	0.543023623302137	0.857468369859798
Merged-chr4-75278316-4	chr4	75277804	75278804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025849)	promoter-TSS (NM_025849)	-12.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	6.79714706815095	6.67585762229787	6.74268232099205	6.78848841681732	6.86493905213623	7.02691646252904	0.238112219599088	0.343729634796938	0.732572352000629
Merged-chr6-97452947-2	chr6	97452447	97453447	+	822.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	PB1D9|SINE|Alu	6339.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.21614409437879	6.97220003365431	6.96251507486689	7.12649501465638	7.15332135202358	7.08776550077075	0.0978433193288897	0.687955853440442	0.917193226920892
Merged-chr12-16875903-4	chr12	16875396	16876396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19082.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	7.75699231274536	7.79492802966651	7.58811297428842	7.34264473137514	7.73144778205051	7.30339436946671	-0.34148159432513	0.171673700748289	0.549979797938767
Merged-chr11-118247560-6	chr11	118247102	118248102	+	982.633301	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	990.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	8.06382541846669	8.27256981683271	7.94585392991011	8.13879913668731	8.23790201790235	8.05434767786792	0.0603411090777473	0.78571382093732	0.948164689606319
Merged-chr11-97766571-4	chr11	97766065	97767065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026186)	promoter-TSS (NM_026186)	48.0	NM_026186	67480.0	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	8.36569868257178	8.67802234592891	8.14595908326212	8.2575798555806	8.39104217682195	7.96188542154419	-0.278443511871275	0.27048484862569	0.667432854436298
Merged-chr14-103059155-4	chr14	103058653	103059653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11063.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	6.50160403488871	6.56170625435208	7.01865103153072	6.82428587812842	7.18510980558776	6.78443097074103	0.384291999160225	0.191130872879304	0.577767117290604
Merged-chr6-72136926-2	chr6	72136426	72137426	+	739.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-13729.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	4.86289162951082	5.11158895929509	5.29113015460617	5.24394480887572	5.19789198077158	5.74544531995007	0.636329108952223	0.105867995203502	0.434365814889403
Merged-chr11-85249578-4	chr11	85249081	85250081	+	997.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	14415.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	5.26340080876767	5.69452776395996	6.16248816288065	5.27392508671073	5.67832190085512	5.98629061015429	-0.141105505482327	0.73298590812244	0.931985446585439
Merged-chr16-4726391-4	chr16	4725886	4726886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001136066)	promoter-TSS (NM_001136066)	25.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	7.71510500326005	7.92357312371901	7.74139693834895	7.77911396403577	7.89298974895463	7.8063562859746	0.0423855087770144	0.846853278298368	0.964111312125802
Merged-chr10-70250947-4	chr10	70250445	70251445	+	810.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	5669.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	6.0538696446448	5.89798945102672	6.24883148531466	6.34576328318717	6.45791635707971	6.50980708659959	0.624682405174789	0.0286378886244513	0.20282209151917
Merged-chr2-180695401-4	chr2	180694850	180695850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291432, intron 1 of 5)	Charlie1|DNA|hAT-Charlie	-3302.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	6.7440417494378	6.80926387130374	6.6138976124523	6.11870160735469	6.36283118139171	5.8142912605207	-0.960505347529913	0.00147486871671403	0.0244079697740299
Merged-chr8-71596095-4	chr8	71595584	71596584	+	947.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025396, exon 5 of 5)	exon (NM_025396, exon 5 of 5)	-1562.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	2.73557296898489	2.66037403387377	2.85207211929022	2.56791479466631	2.66366718894169	2.74555188442085	-0.48103624053208	0.519000870530104	1
Merged-chr8-34849048-3	chr8	34848549	34849549	+	744.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 18 of 26)	intron (NM_175091, intron 18 of 26)	41439.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.24608616544587	2.43537298254985	2.5216684180213	2.07574408524449	2.27066335332917	2.34577330611982	-1.13932772938533	0.211990505526613	1
Merged-chr2-124927575-4	chr2	124927075	124928075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-140552.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	6.75062454283992	7.14714009062633	6.57840422490959	6.35071324498232	6.57868038844476	6.47466920570677	-0.605635894406291	0.037721273779259	0.240137273590206
Merged-chr16-31209980-4	chr16	31209431	31210431	+	886.622192	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8693.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	3.39915099662337	3.23044990591401	3.25896759906969	3.30073757149804	3.28743358534144	3.59925949996984	0.376465080374082	0.542096515279007	0.857034750433211
Merged-chr14-50956188-3	chr14	50955677	50956677	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	36.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	3.28291773602597	3.23943975540415	3.56324325682874	5.1168134226159	5.10401303202105	4.63799595227706	8.30281171466465	1.89847461892219e-11	2.91993116619737e-09
Merged-chr12-17764277-3	chr12	17763852	17764852	+	969.761902	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	73543.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.88104840369648	3.98357069867475	4.26774772262467	4.08945105890338	4.09925859616863	4.29217401065429	0.327438988327654	0.507890311047989	0.839513705470194
Merged-chr6-86524173-4	chr6	86523706	86524706	+	878.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_011865)	TTS (NM_011865)	1983.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	5.99141023389099	5.72745059195039	5.80645746415135	5.82363234406453	6.05394821184235	6.14221704099452	0.284489487285021	0.35789677474757	0.744422428587036
Merged-chr11-118221742-2	chr11	118221242	118222242	+	918.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9000.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.24274306521941	5.89711747420783	6.28336705250898	6.11989622580706	6.27816344781515	6.36187414362317	0.183159132552038	0.539511626372845	0.855947170442397
Merged-chr8-122315687-4	chr8	122315193	122316193	+	801.979187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33552.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.68901030525504	3.67134345696344	3.7154204844879	3.92463143221943	3.54637350073527	3.78532092876321	0.21993626873303	0.689351760245197	0.917319650405699
Merged-chr11-103364380-4	chr11	103363874	103364874	+	895.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183288)	promoter-TSS (NM_183288)	-682.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	6.22435711244629	6.0194192038553	6.14693340534732	5.96396559751793	5.90247083736819	6.14452646966966	-0.228952313494871	0.435068082281058	0.798753078814766
Merged-chr17-87247070-4	chr17	87246575	87247575	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18872.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	6.89038327686269	6.61421624364312	6.83573274955142	6.38622340171334	6.42660126911802	6.47695639081803	-0.564844485162652	0.0328083017956583	0.220670372307262
Merged-chr18-61083866-2	chr18	61083366	61084366	+	575.25	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001146268, exon 23 of 23)	3' UTR (NM_001146268, exon 23 of 23)	-21706.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	3.4710741086164	3.04843831409862	3.24353873883454	3.53945646660317	3.39659889732042	3.74463880901446	1.11320737372399	0.0850926644921405	0.386252608791229
Merged-chr5-36563302-4	chr5	36562793	36563793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19104.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	7.83466813043217	7.61142151161414	7.50541682358902	7.57248574648874	7.71584182233386	7.70464842478376	0.00400131350000597	0.986213045103515	0.997033990984076
Merged-chr1-156465250-5	chr1	156464896	156465896	+	683.93335	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009230, intron 2 of 15)	B2_Mm1t|SINE|B2	8932.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.149112293093	4.97432416386054	4.98460269843546	4.20363368663659	4.30671313659407	4.6009077236487	-1.60479402879754	0.000168017236463707	0.00435078379031925
Merged-chr12-11214892-3	chr12	11214392	11215392	+	977.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5944.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	4.02316917002632	3.83751397366452	4.13255536826671	3.44519775033609	3.13298273291978	3.45737735075828	-2.45310362978435	9.66272056622048e-05	0.0027544215583216
Merged-chr2-179978052-3	chr2	179977512	179978512	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033782, exon 2 of 2)	non-coding (NR_033782, exon 2 of 2)	1159.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	4.66374500957672	4.57031829175323	4.66191579550045	4.81047530152355	4.72158409520784	5.20562089501789	0.65397253823232	0.116696846399305	0.456173597444018
Merged-chr8-45410761-2	chr8	45410261	45411261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_126166)	promoter-TSS (NM_126166)	-142.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	5.8946195117465	6.27291147456031	6.19036892420386	6.05831819321145	6.54429222995766	6.59427218941283	0.484172565778931	0.127174257639649	0.476598461004366
Merged-chr2-166968686-2	chr2	166968186	166969186	+	991.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-3969.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	3.91576735390995	4.00066388372492	3.89931718577987	4.42447239829344	4.38159231669686	4.63587089456248	1.48605645831571	0.00192808740470185	0.0300587911418973
Merged-chr6-34399908-2	chr6	34399408	34400408	+	567.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12454.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	5.5684072863456	5.58964576465462	5.53806944173416	5.11041814313396	5.10129060872644	5.09907122641504	-0.920732603718918	0.00659404818545215	0.0748434813006551
Merged-chr5-140643546-2	chr5	140643046	140644046	+	831.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	5485.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	4.40361450704054	4.91406816742822	5.01746454991205	5.06967409416841	4.77228903485926	5.04831436156973	0.366034372860336	0.399127588092019	0.775688105708038
Merged-chr1-138976142-4	chr1	138975632	138976632	+	874.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-1525.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.21461268067194	4.15113397133217	4.01599579767499	4.31979518317255	4.08655926096404	4.03535161361713	0.0555583748215417	0.908460401391381	0.979259582109985
Merged-chr4-151057554-4	chr4	151057060	151058060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009498, intron 1 of 4)	CpG	393.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	8.58175727159393	8.85995647591895	8.30993690489439	8.45649547954815	8.52803578588209	8.26927586757622	-0.254936015121319	0.287280142638911	0.68462852545501
Merged-chr10-128090760-4	chr10	128090255	128091255	+	988.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_016774)	TTS (NM_016774)	-2028.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	6.17949660821331	5.97637909210018	6.34010541288298	6.27909263860745	6.5934075525941	6.60745115347788	0.556035315295097	0.0573383269396672	0.308983065086188
Merged-chr12-76923316-2	chr12	76922816	76923816	+	996.8333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38932.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.05922407826904	2.91293042735909	3.2719673140542	3.46557883411038	3.23920255870189	3.34382883228684	1.14062364046632	0.0833765681323446	0.382121680596912
Merged-chr13-34237486-2	chr13	34236986	34237986	+	569.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	74522.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	5.63822790162317	5.75177066490018	5.16241058862989	5.91605712493167	6.1352969724184	5.71711328117779	0.694852452457736	0.053079390752582	0.295268748879586
Merged-chr10-122574423-2	chr10	122574010	122575010	+	865.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4619.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	3.46582413693747	3.28765764900677	3.33325690121866	3.81528228987927	3.87849791217242	3.84618008526964	1.72371827732216	0.00290448907624124	0.041101484193177
Merged-chr2-32080645-2	chr2	32080145	32081145	+	670.833374	f1_balb.idr|f1_c57bl6.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	3060.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	5.56889377223214	5.5040523397896	5.73281829553191	6.14509723472965	6.15618092859227	5.84676523546762	0.838337865877407	0.00710491168638999	0.0790038075105089
Merged-chr4-59222459-1	chr4	59221959	59222959	+	794.0	f0_balb.idr	3' UTR (NM_011673, exon 9 of 9)	3' UTR (NM_011673, exon 9 of 9)	32909.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	4.17160599273211	4.44084020914281	4.32042989296749	4.14810520190394	4.21756664210961	4.15949974652794	-0.378868204843624	0.414517871566903	0.785837712910138
Merged-chr15-77626655-4	chr15	77626164	77627164	+	983.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16622.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	5.18666857013239	5.39649524783261	4.60713812864429	4.74884267041386	4.48535448966201	4.95952732977076	-0.827006173167194	0.0675663920191802	0.340012588834648
Merged-chr4-154981923-3	chr4	154981424	154982424	+	897.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001305804)	TTS (NM_001305804)	17801.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	2.54410225835264	2.36550655568694	2.60189467245031	2.67279095959472	2.36398995670355	2.73700148001794	0.531248016401565	0.516579961033941	1
Merged-chr11-54727566-4	chr11	54727073	54728073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	60130.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	6.41375893604629	6.48596214435635	6.04863396656818	5.94055888419062	6.31666487103815	6.22062598342874	-0.279275564911396	0.363250864352597	0.74889439844031
Merged-chr17-34124376-3	chr17	34123885	34124885	+	920.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010386, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	-1133.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	5.88200452973322	5.98831075608227	6.37811187195121	6.49065034269445	6.82804504538681	6.95395904427182	1.11000773036106	0.000287646092310822	0.00673072442322804
Merged-chr2-167375331-4	chr2	167374835	167375835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26157.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.53920349036445	7.26078758027232	7.12976576744395	7.15214828118041	7.07949430607056	6.54437314631325	-0.54404605590165	0.0602507640864825	0.317783061492649
Merged-chr7-110999640-4	chr7	110999157	111000157	+	945.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17196.0	NM_194464	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	3.06234845238523	2.71975230799044	2.80331482463909	2.88295525405214	2.70280586618819	2.9983306343798	-0.050674614036778	0.945301838246004	0.987900971574648
Merged-chr19-5636732-4	chr19	5636235	5637235	+	927.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-755.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	8.86574707294796	9.08211638476365	8.53471000258983	8.57463606670048	9.22942606424404	8.47658759011386	-0.0499282877057895	0.861992181078586	0.967996224966109
Merged-chr6-108576902-1	chr6	108576402	108577402	+	787.333313	f0_balb.idr	TTS (NR_104577)	TTS (NR_104577)	46265.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.20172727415584	2.86241587162855	3.1302096795175	2.87640072470479	2.65468705264535	3.08906948615526	-0.911825920233664	0.221067025875213	0.61561513090473
Merged-chr1-171660603-4	chr1	171660106	171661106	+	992.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER77B|LTR|ERVL	-7569.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	5.20752467164562	5.45447724981988	4.85103953266569	5.21978990122521	5.19959767638742	4.99832451543241	-0.123125742670031	0.753723821494738	0.938570691167124
Merged-chr19-5770592-2	chr19	5770092	5771092	+	813.125	f1_balb.idr|f1_c57bl6.idr	intron (NR_155264, intron 2 of 15)	intron (NR_155264, intron 2 of 15)	827.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	5.62911981801113	5.62869624626112	5.5759387716637	5.56405405053299	5.72557709670361	5.58195758654562	0.0343260207553781	0.913751617736904	0.980796798598326
Merged-chr14-31422613-4	chr14	31422109	31423109	+	895.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4932.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	7.59430821135614	7.55130471321532	7.45209153797133	7.34694446963704	7.52579929897057	7.34678437039344	-0.179625436939206	0.431225510489948	0.796745026686968
Merged-chr4-45795292-4	chr4	45794788	45795788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3734.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	4.67252866532155	4.63495057618236	4.51712016502148	5.1247154573607	4.85352513832773	5.14859890726071	0.958636312939878	0.0172480369409992	0.146371714205677
Merged-chr6-58937491-4	chr6	58936983	58937983	+	998.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153574, intron 17 of 17)	RLTR40|LTR|ERVK	-30357.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	4.47366514796647	4.36714069493371	4.74284852404727	4.45550058423555	4.55264802289549	4.62118212165077	0.0410841514006124	0.924588159317545	0.983007699174505
Merged-chr18-35021303-3	chr18	35020770	35021770	+	772.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-66919.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	3.85709616289778	3.66238668518585	4.02855005985044	3.79829101048763	3.63025038202431	3.95923644582646	-0.179665301425795	0.740964840021822	0.934712654423072
Merged-chr12-35055334-1	chr12	35054834	35055834	+	578.0	f0_balb.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	8145.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	6.93544536565059	7.00379685411775	6.21353206345106	6.69815372645622	6.82073496057446	6.36342183433099	-0.198487725387001	0.547778152917172	0.859445606128575
Merged-chr8-70140364-1	chr8	70139864	70140864	+	951.0	f1_c57bl6.idr	promoter-TSS (NM_001309841)	promoter-TSS (NM_001309841)	87.0	NM_001309841	72368.0	Mm.644	NM_001145552	ENSMUSG00000002345	Borcs8	2310045N01Rik|Mef2bnb	BLOC-1 related complex subunit 8	protein-coding	4.12003109740141	4.21182037678965	4.47775407284319	4.07408857853095	4.1970564865504	4.3410862259541	-0.1776489217023	0.708717479329228	0.92375127577894
Merged-chr4-59214910-4	chr4	59214404	59215404	+	998.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011673, intron 5 of 8)	intron (NM_011673, intron 5 of 8)	25354.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	4.49638757972422	4.7578816669283	4.61018193512529	4.83327393444721	5.0214407028165	4.40609838287515	0.381913922001185	0.390792923747548	0.769945246588828
Merged-chr2-145861763-3	chr2	145861254	145862254	+	912.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-41487.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.61682425840511	5.39726962730137	5.44329830569323	5.55642271612445	5.12645566223469	5.3541926153863	-0.270199006799523	0.445665958251635	0.805296706011004
Merged-chr7-127302722-2	chr7	127302222	127303222	+	608.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253873, intron 7 of 30)	B4A|SINE|B4	6462.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	3.20942337669792	3.49034773219515	3.48971061543853	3.39885397951451	3.24301564768834	3.70984118094938	0.208087331103429	0.740200723495195	0.934499978758628
Merged-chr10-42273877-4	chr10	42273335	42274335	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2907.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.96902739386279	4.9760777287679	5.1041839913973	5.04977400902078	4.9683182605891	5.40823788510495	0.273808952334689	0.472511881441991	0.820550293768681
Merged-chr14-25394782-4	chr14	25394280	25395280	+	932.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64405.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.10488392109864	2.68932141908709	2.94939361124342	2.66321166570754	2.80493590633049	2.71311837820757	-0.987234594039334	0.195221311513974	0.582885610090219
Merged-chr8-73353630-4	chr8	73353136	73354136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-96.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	6.35059585166851	6.66024053572178	6.49420978120509	6.48058927678682	6.36533094874137	6.5359609249775	-0.0861338136436916	0.753178468070974	0.938549578325581
Merged-chr7-25220000-4	chr7	25219501	25220501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-142.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	7.97985107181027	8.31262120052921	7.69071982482646	8.26868696059784	8.62270816021309	7.91694768731098	0.397195579998932	0.166991919283109	0.542585170046035
Merged-chr16-91405786-4	chr16	91405284	91406284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-451.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	8.3760465242865	8.20125963036284	7.9318917730321	8.18277587428842	8.52952293605199	7.98787296063378	0.102744011384391	0.688887306771469	0.917235946766438
Merged-chr9-107739947-2	chr9	107739447	107740447	+	599.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_148930)	TTS (NM_148930)	-29472.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	2.50465673803898	2.50654144323941	3.03461418932351	2.45349533879107	2.42778215858393	2.94462486663211	-0.386177202995034	0.655412163634497	0.904253611535387
Merged-chr4-43474208-5	chr4	43473699	43474699	+	863.863342	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9510.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	5.00023513171691	4.8811745468438	4.92462656381763	4.85853548551447	4.81285372627159	5.21966987621938	0.0584539783773449	0.881333331673279	0.972663755711522
Merged-chr8-106153148-4	chr8	106152648	106153648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	2794.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	7.63242960368833	7.82961679314359	7.34493898670762	7.68225378209723	7.80527003981197	7.49067574523685	0.0659218500694895	0.79361683167867	0.950530707771746
Merged-chr5-76529277-4	chr5	76528783	76529783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027270)	promoter-TSS (NM_027270)	-24.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	6.16823994498538	6.34876725224569	6.50990932430922	6.0503125589453	6.14306808153852	6.43223940426311	-0.221385187734621	0.454804161622424	0.810570423349433
Merged-chr4-57930771-4	chr4	57930264	57931264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14500.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	5.4071493089048	5.67468621508014	5.34567344839359	5.56611858712122	5.23859559010638	5.17413895126271	-0.291836631363748	0.417333587861482	0.787962177871073
Merged-chr6-39574492-2	chr6	39573992	39574992	+	936.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_178873, exon 1 of 8)	exon (NM_178873, exon 1 of 8)	616.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	5.30670100888798	5.36705317175828	5.41102100005256	5.21030763138427	5.28970160077824	5.22612580106498	-0.227956691353364	0.503654777586805	0.837140822864962
Merged-chr7-63895386-2	chr7	63894867	63895867	+	701.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_021366, intron 1 of 1)	MLT1C|LTR|ERVL-MaLR	-21490.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	3.17605107468467	3.30659998394165	3.11262823436548	3.33501155326515	3.18764176624693	3.30264095000714	0.282155812942216	0.653852702760081	0.903558174250044
Merged-chr5-101864159-4	chr5	101863662	101864662	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 50 of 66)	intron (NM_172882, intron 50 of 66)	99032.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	3.56991353768404	3.42633304239346	3.67475624875933	3.72533239796109	3.91686456764202	3.6925745321484	0.798484885262384	0.150669461050932	0.517564234271863
Merged-chr4-130827414-3	chr4	130826902	130827902	+	815.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34865.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	3.70399372119246	3.6405003392494	4.06380761328206	3.96839573054273	3.80870010169237	4.04157091373751	0.415670420751619	0.439338527447628	0.801090064804651
Merged-chr12-73584750-4	chr12	73584255	73585255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-41.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.66063509061842	6.98489423784292	6.83950593321455	6.79596049735848	6.57562151389055	6.69913007905462	-0.228700127103942	0.386845379659616	0.767242114725069
Merged-chr4-45010201-2	chr4	45009701	45010701	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173399, intron 1 of 1)	intron (NM_173399, intron 1 of 1)	2211.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	2.68908374907057	3.13153726453402	3.01338237074623	2.96671830580707	2.91567909503558	3.08560632619273	0.134205064297923	0.853245242488252	0.965627960080552
Merged-chr9-25519917-2	chr9	25519417	25520417	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	38320.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	5.1934052659174	4.81454308519142	4.68058093704637	5.16640178441052	5.1741667987193	4.61394750682495	0.208670653786642	0.634486724380511	0.896350313439852
Merged-chr12-102333313-4	chr12	102332794	102333794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	49653.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.81430602442398	4.80011937205079	4.90605504364025	4.44845535642361	4.16903983378722	4.64091985722051	-1.02074044028256	0.0191193880017915	0.156812156021778
Merged-chr18-9552699-5	chr18	9552135	9553135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MMVL30-int|LTR|ERV1	66834.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	6.23224675885236	6.48913060300471	5.9089628556281	5.5758261450408	5.4797343392137	5.59907652564248	-1.27191981744188	0.000103192324161294	0.00291068587073544
Merged-chr1-7099093-1	chr1	7098593	7099593	+	545.0	f0_c57.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	10173.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.29833085274689	3.30497308494772	3.45461806689199	3.29307445471149	3.61910503207573	3.72347770296763	0.779960990569081	0.199006000956368	0.587423864896856
Merged-chr16-10436457-4	chr16	10435963	10436963	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	10899.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	5.34742911804844	5.11504564939161	5.6160993168488	5.20392355134386	5.18964040898934	5.01110366954142	-0.444860458863976	0.234267340239109	0.630451076898212
Merged-chr1-85895698-4	chr1	85895210	85896210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1200.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	7.80881478406447	7.56109666376085	7.78189542886608	7.96660697733827	8.03966101792569	7.66939459103986	0.270439060532881	0.252527024845056	0.649921954382832
Merged-chr11-115512898-4	chr11	115512393	115513393	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	1500.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	6.53368174466006	6.19399954810083	6.44106722554664	6.41205808116513	6.79130291619282	6.51860146395402	0.31715512959565	0.272416175606238	0.669663338532819
Merged-chr2-29055247-4	chr2	29054735	29055735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001166705)	promoter-TSS (NM_001166705)	-169.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	4.10578994307692	3.83701570657447	4.34866147209802	4.08814117980755	3.93044371865609	4.29181962121455	-0.00300726288489273	0.995356295810821	0.998961028701257
Merged-chr3-88648910-1	chr3	88648410	88649410	+	601.0	f1_balb.idr	TTS (NM_001198911)	TTS (NM_001198911)	4232.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	4.88215335106343	4.94469501095354	5.05150382793636	4.74022983149955	4.89248706583729	4.75392716695177	-0.340869390185062	0.377861774829995	0.760218641134828
Merged-chr11-75141697-2	chr11	75141197	75142197	+	968.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26455.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	5.57168642155381	5.5502921948831	5.49726140247301	5.62986877168456	5.52555976881188	5.01171130979949	-0.212543713483078	0.560044457443358	0.865168019835518
Merged-chr15-25532268-3	chr15	25531770	25532770	+	945.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-90280.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.11291153766191	3.96848996935008	3.66128039081535	3.90572783059151	3.43308100359605	4.17802532008605	-0.175004761200979	0.77393269342013	0.944238027249587
Merged-chr6-33256849-3	chr6	33256351	33257351	+	757.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347089, intron 1 of 9)	intron (NM_001347089, intron 1 of 9)	7723.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	3.86546476792321	4.02768785141227	3.88920266248007	3.97709450100608	4.00528849234088	4.44384115234659	0.633386036476981	0.220155215644479	0.614507907782981
Merged-chr2-30782587-4	chr2	30782100	30783100	+	999.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19137.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.72370342376166	5.61265399400629	5.53422519596299	5.46910722020268	5.36510559453246	5.51057550165392	-0.356104374430477	0.273422372397415	0.670659339634344
Merged-chr7-144941665-4	chr7	144941162	144942162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1737.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.86145647932873	6.90263039643828	6.9938403160028	7.15515498221453	7.4837908386723	6.96856525238304	0.476802888467094	0.0710790170095884	0.349754160102533
Merged-chr5-45497216-2	chr5	45496670	45497670	+	885.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024434, intron 3 of 12)	intron (NM_024434, intron 3 of 12)	3796.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	4.595930621287	4.3613850600124	4.44197359544644	4.22930015885313	4.54484900930834	4.378119744785	-0.186689443960614	0.678331456529184	0.913379518157547
Merged-chr8-129234309-4	chr8	129233849	129234849	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153780)	promoter-TSS (NM_153780)	-303.0	NM_153780	72139.0	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	7.23954112757179	7.17869729987465	7.29794776305028	7.47134862800391	7.69823855626134	7.48391668467194	0.477967115704865	0.0390853139861392	0.245171594457532
Merged-chr6-17726269-2	chr6	17725758	17726758	+	670.5	f0_balb.idr|f1_balb.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-17334.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	2.88699304476598	3.29436652486891	3.19751381780813	2.99954752446638	3.149701300176	3.2125963381523	-0.0685819580882577	0.919999975869852	0.982208396317312
Merged-chr11-120894180-3	chr11	120893680	120894680	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 10 of 18)	RSINE1|SINE|B4	38692.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	4.71076785174723	4.63466125723403	4.58754033457393	3.9880199274079	3.88326715151855	3.90827066935171	-2.01167560508066	2.56073794089432e-05	0.000902473030859529
Merged-chr13-51137997-3	chr13	51137491	51138491	+	930.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	3673.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	2.79534227351058	2.78158008832456	2.8923109504041	2.66271394569248	2.82948886391165	2.96414340052915	0.00107992912542723	0.998804642572255	0.999777890446572
Merged-chr6-124808850-4	chr6	124808368	124809368	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001306052)	promoter-TSS (NM_001306052)	-17.0	NM_001306052	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	7.52102673283453	7.38113193104609	7.46279515897543	7.63087578135588	7.60818747328145	7.40321837129873	0.147837497503078	0.51720515189528	0.844527100635531
Merged-chr12-102702633-3	chr12	102702104	102703104	+	842.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	2265.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	4.84698369011519	4.7319212219016	4.90000266632629	5.02464884657525	4.9080204872165	5.03515243363386	0.359935862846936	0.343662300562589	0.73254054475899
Merged-chr2-69707161-1	chr2	69706661	69707661	+	579.0	f0_c57.idr	intron (NM_177244, intron 4 of 13)	intron (NM_177244, intron 4 of 13)	5445.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	2.4337170896107	2.54075686652357	2.55986431001954	3.02800355768385	3.43877304222611	2.97709809452892	4.33246069056049	3.97840206795946e-05	0.00130374239656904
Merged-chr11-3649828-2	chr11	3649328	3650328	+	842.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001159288, exon 1 of 27)	5' UTR (NM_001159288, exon 1 of 27)	334.0	NM_001159288	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	5.6878205064557	6.19794045671471	5.91380276362401	6.33029698832208	6.03494307244474	6.11376855326072	0.358359662384355	0.264963308355067	0.662790696671811
Merged-chr1-165771774-4	chr1	165771269	165772269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	MIR|SINE|MIR	8011.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	5.5221662407027	5.06659094716168	5.87995342858795	5.69930458708353	5.4761237986152	5.59952790932263	0.135144481774414	0.724563685846949	0.929435720851808
Merged-chr6-54681643-4	chr6	54681162	54682162	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	38.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	7.01206432884978	7.17892517167514	7.25321774774047	6.00622113129701	5.75094332352055	6.06685933438123	-1.96388194956798	1.28292688584172e-12	2.42613137084359e-10
Merged-chr5-44053132-1	chr5	44052632	44053632	+	614.0	f1_balb.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	41636.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	3.67310306307541	3.36054296575699	3.64573055892917	4.76206728354491	4.70126890780346	4.120715509684	3.12315352927586	1.39873050426541e-07	9.61069924020775e-06
Merged-chr11-85311211-4	chr11	85310721	85311721	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-33.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	7.15153314623116	7.54275767182027	7.53163827332075	7.249430735133	7.43490043884403	7.41901375962927	-0.0708648875948205	0.776766282636844	0.944892922631445
Merged-chr2-33909197-3	chr2	33908696	33909696	+	902.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-21250.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.89472498597688	3.75308582624702	3.62187718036021	3.8456117487705	3.4864957367557	3.85063225709616	-0.112731078343361	0.841376641452999	0.962909549034125
Merged-chr10-128232826-2	chr10	128232326	128233326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164081, intron 1 of 28)	intron (NM_001164081, intron 1 of 28)	763.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	4.71969009354979	4.80851742898101	5.33743515712705	5.25149109716632	5.61034767712512	5.56528598651598	1.05183663704732	0.00844279632778575	0.0894708146925061
Merged-chr18-38001270-2	chr18	38000773	38001773	+	611.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2304.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	2.5258234190383	2.58686401095727	2.65550916400021	2.63549513380601	2.53725029169367	2.72860075290667	0.247316758547658	0.744570472410865	1
Merged-chr6-122564823-2	chr6	122564323	122565323	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009645)	TTS (NM_009645)	11014.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	3.58406732619833	3.63340806986792	3.85864825436624	3.80393269397951	3.72970755660491	4.06424866940701	0.571869207776467	0.293472136114744	0.690276727211546
Merged-chr17-69265471-4	chr17	69264969	69265969	+	948.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355736, intron 12 of 21)	intron (NM_001355736, intron 12 of 21)	11737.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	3.29757224181263	3.56095020930381	3.54270488623654	3.36902458517752	3.63226056723359	3.55991504045761	0.206650956917811	0.727614954520085	0.930204882969987
Merged-chr7-119880543-4	chr7	119880039	119881039	+	981.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14919.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	4.81707862636138	4.95609698285724	4.64411712193147	5.04926693389703	5.18994587438742	5.0617102541125	0.612989850543282	0.112007926793532	0.447021707162751
Merged-chr6-125232569-2	chr6	125232069	125233069	+	724.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145391)	promoter-TSS (NM_145391)	-709.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	5.21434060801031	4.86792106451516	5.39150678651254	5.08997418838376	5.13635630481703	4.97298691649473	-0.192217689179069	0.619652241029277	0.889868376148509
Merged-chr11-71855353-4	chr11	71854872	71855872	+	999.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84750.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	5.39503609088487	5.73935889143787	5.07613815040259	5.40473702375713	5.58969495199212	5.21332265701292	-0.0496064053627646	0.897976317825225	0.976213110836171
Merged-chr19-10692537-5	chr19	10692072	10693072	+	685.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	3837.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	5.84225961590823	5.61194227351847	5.88415355025322	5.67851456739852	5.79916889037074	6.15879924852474	0.187983298514895	0.567058313193215	0.867742628008279
Merged-chr2-91537763-4	chr2	91537258	91538258	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001165989, intron 1 of 43)	intron (NM_001165989, intron 1 of 43)	-8564.0	NM_029437	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	4.20224317633344	4.26866645664841	4.46239360709288	4.23723315570319	4.33355335296549	4.48793530436828	0.117270363071452	0.796285947898118	0.951410019719943
Merged-chr5-62766356-4	chr5	62765874	62766874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178407)	promoter-TSS (NM_178407)	-197.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	6.54491361681129	6.34710426304522	6.24361324771219	6.39657119110264	6.33488156254157	6.42186325105498	-0.0160265478400191	0.953572499574901	0.989446911725587
Merged-chr12-87200321-4	chr12	87199822	87200822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	-93.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	5.17549315779398	4.65657632277432	4.65643346926489	5.16528303457142	4.65218786491385	4.68187735944573	-0.00838671754875823	0.985223203989205	0.996873682039026
Merged-chr7-80780059-2	chr7	80779594	80780594	+	826.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23237.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	6.86467734201497	6.87935558211662	6.85525469257251	6.66734612558614	7.17047746496861	6.58998755568708	-0.0229655191572606	0.93606649701121	0.986014061025137
Merged-chr14-101586214-2	chr14	101585714	101586714	+	780.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	22977.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	2.56495676042862	2.62343768957523	3.05466135382496	2.32011336799974	2.47869761056633	2.6757772298165	-1.50292522969384	0.0838294844662685	0.383205048783699
Merged-chr17-70987001-4	chr17	70986494	70987494	+	687.208313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3522.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	6.09109919124872	5.79099242696956	6.02091655761393	5.88460248411553	5.91257856747869	5.5949073427507	-0.274542372674494	0.38652489241811	0.767131316757601
Merged-chr16-87433627-2	chr16	87433127	87434127	+	711.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016924, exon 5 of 5)	3' UTR (NM_016924, exon 5 of 5)	-1021.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	2.30865379577381	2.30863856625147	2.65750093961131	2.26829397005348	2.37749441633902	2.15599558896423	-1.01807540033008	0.263420763263682	1
Merged-chr8-98996219-4	chr8	98995795	98996795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15592.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	3.9328781666344	3.74312023084528	4.17454429481218	3.74325695943175	3.56648191251955	3.61826664778353	-1.01278632208387	0.0671484488976967	0.33878778413046
Merged-chr9-110305210-5	chr9	110304725	110305725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	33.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	6.51987314088318	6.9414132545849	6.83657997470469	6.60394171732952	6.92849125787065	6.67937800182088	-0.0403965544970259	0.885465728446653	0.973611377589001
Merged-chr11-20112977-4	chr11	20112465	20113465	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-14.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	8.23432700692375	8.35741651508509	8.25458317546548	8.31382822470601	8.37446781540123	8.35890076757069	0.0910949608340426	0.651930690111291	0.902896807825606
Merged-chr8-27018603-4	chr8	27018072	27019072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR42-int|LTR|ERVK	-5227.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	7.00423257580767	7.21821911760583	6.71166833568665	6.74609483336792	6.87510698387638	6.59831596268427	-0.389188628629964	0.158219126782978	0.529917060944743
Merged-chr19-11107965-4	chr19	11107457	11108457	+	948.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027058, intron 4 of 6)	intron (NM_027058, intron 4 of 6)	22921.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	6.01620451754809	5.87844838086175	5.57926831985236	5.62930665245866	5.13444477262848	5.85095908994012	-0.5204093040799	0.163710898381666	0.537749158771312
Merged-chr6-56901999-4	chr6	56901513	56902513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252374)	promoter-TSS (NM_001252374)	-127.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	7.44840960203697	7.87673411862186	6.89447364526334	7.46607836327206	7.94915805410202	7.2131136342334	0.159281805416359	0.640998389131053	0.898702466179427
Merged-chr7-19149407-4	chr7	19148911	19149911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-215.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	6.04345772819839	6.25512390075995	6.34379450788499	6.11357281080343	6.56377002307458	6.18318806805298	0.165285300549841	0.588829544187401	0.876650937479947
Merged-chr5-135012231-4	chr5	135011707	135012707	+	913.4791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001190437)	TTS (NM_001190437)	950.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	5.68776189235087	5.65301283388936	6.00307123023188	6.20121576378277	6.39643102410779	5.97146493051793	0.75276960600223	0.0169623530933493	0.144685133387125
Merged-chr5-113910714-3	chr5	113910223	113911223	+	807.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2017.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	5.48661405696921	5.22427198040074	5.75718329829728	5.11587212733731	4.80919414786548	5.12734758814839	-0.975559917805001	0.0111616220881745	0.108672261064478
Merged-chr3-142765980-4	chr3	142765472	142766472	+	971.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	725.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	7.20834457071049	7.46832214760537	7.17209309016498	7.19920092559724	7.34839446715657	7.01997615277232	-0.135700408212716	0.59078692816251	0.877301111216348
Merged-chr15-86185077-5	chr15	86184601	86185601	+	992.8666380000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_155352)	promoter-TSS (NR_155352)	-627.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	8.34397554551775	8.78789251428804	8.58695510005094	8.54688322661584	8.69154253734049	8.53361014853055	0.0102630503805615	0.963620915994248	0.991121100730027
Merged-chr13-33952227-4	chr13	33951714	33952714	+	852.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-12445.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	5.08460319556152	5.11428336132325	5.3220890266895	5.34484936432593	5.40672705921798	5.19411648574877	0.317297321120957	0.368820686481013	0.753638793969867
Merged-chr12-85686170-2	chr12	85685670	85686670	+	853.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016767)	promoter-TSS (NM_016767)	-550.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	4.58620633892297	4.30680673373096	4.62778631485751	4.41360645703603	4.32960134672775	4.53611191760291	-0.21886970452556	0.620978383937295	0.890443966155973
Merged-chr4-132167644-4	chr4	132167148	132168148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23162.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	2.73733737786713	2.66320140556172	3.22361218164361	2.9042739994066	2.77311880064986	3.02377861141728	0.0387124680704384	0.959357625735135	0.990174309444982
Merged-chr9-114781674-7	chr9	114781180	114782180	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_133978, exon 1 of 5)	exon (NM_133978, exon 1 of 5)	313.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	7.54644278203401	7.75043078440027	7.75367144846402	7.9889787811446	8.0052613651853	7.88444803598596	0.398699639379841	0.0687736849889043	0.343101021477383
Merged-chr1-121508535-4	chr1	121508029	121509029	+	926.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19936.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	4.96910719009424	5.02090513589349	5.49207287088168	5.98582654346594	6.07110317006033	5.86841907740331	1.54872909526978	8.61933947338811e-06	0.000351740068122451
Merged-chr6-57536410-3	chr6	57535987	57536987	+	895.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1061.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	7.11160276507209	7.54048955118687	7.13158208596453	7.11156559036239	7.62543955947428	7.26319470716413	0.113721393301815	0.685617943351582	0.916331487430729
Merged-chr17-35188436-4	chr17	35187905	35188905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	35.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	7.01154772659388	6.77613656706039	6.91295912806591	7.06337627157117	7.14362466890839	7.03965442894799	0.278999171563107	0.2543586262956	0.651334544328546
Merged-chr13-54688771-2	chr13	54688271	54689271	+	827.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	-571.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	7.16642297170637	7.24742236674786	7.10126319508495	7.09114833567008	7.42134053168614	7.24505984838387	0.132261469587136	0.588114156640927	0.876193818234966
Merged-chr5-149229152-4	chr5	149228654	149229654	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35850.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	5.76660489428219	5.98237202178262	6.1550673042445	6.11672301150319	5.92811088875489	6.02305820121298	0.0927808789965049	0.76112718184625	0.941142869178598
Merged-chr4-40722398-4	chr4	40721900	40722900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_029594)	promoter-TSS (NR_029594)	-68.0	NM_008298	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	8.09696829856905	8.19819835780626	7.84778570825895	7.83834824905195	8.2090385878974	8.35083269485557	0.124803455057872	0.615423442293433	0.88797905622544
Merged-chr13-93498507-3	chr13	93498016	93499016	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	1292.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	6.37776588797798	6.75093593707504	6.08474942362475	6.38397170878943	6.34721742735382	5.97364700725556	-0.310110424575184	0.342005394506515	0.731142095278512
Merged-chr7-126201008-2	chr7	126200508	126201508	+	725.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	-507.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	5.05380445381975	4.87507982186477	5.22127677271372	4.75624790438335	4.85821480597764	4.68562016413756	-0.60320246851807	0.126619076426332	0.475551373448102
Merged-chr7-30952835-2	chr7	30952335	30953335	+	887.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3968.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	3.598685532172	3.33214769129587	3.59243416949729	3.62663014253035	3.54719281880885	4.08469061317327	0.869310896591944	0.146399462226641	0.510331229700642
Merged-chr15-76576509-5	chr15	76576019	76577019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172960, intron 1 of 14)	CpG	160.0	NR_073123	268822.0	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	6.7916684587964	6.67658807504442	6.93667348448853	6.80142202983277	6.79902401251222	6.79523221565525	-0.000476573408050667	0.998489665617302	0.99968860062024
Merged-chr19-55234715-2	chr19	55234215	55235215	+	615.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	6521.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	3.00149157573213	2.89146639587413	3.09101156339138	3.14124528658876	3.30553371617848	3.38581848260213	1.26787410404328	0.0549833876832679	0.30126812342614
Merged-chr13-112760703-4	chr13	112760199	112761199	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40078.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.58419549850912	5.36765427433851	5.2797963880529	5.0829994403722	5.21562702556026	5.14295719058701	-0.544104696464778	0.123693189958402	0.470659623115383
Merged-chr9-13300386-3	chr9	13299900	13300900	+	899.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53444.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	5.45628150507846	5.61282131070984	5.56206364548343	5.52554350480533	5.43602937901958	5.62420575098367	-0.0409305723304	0.899926553301989	0.976728292075907
Merged-chr2-109220563-7	chr2	109220069	109221069	+	953.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	57721.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	3.73793871295174	4.01148242120095	4.02349850907215	4.23665204960062	4.15363534579524	3.89030942130047	0.529544560709473	0.302379219290234	0.699062610540422
Merged-chr1-128020543-4	chr1	128020024	128021024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285945, intron 6 of 20)	L1ME1|LINE|L1	81947.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	4.23849116057503	4.13206871906129	4.05452333922517	3.58143000813766	3.88177950287958	4.02824314303213	-0.923000205935372	0.080329523199201	0.375045391446477
Merged-chr9-102625581-3	chr9	102625134	102626134	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	490.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	7.48874292629951	7.77871175428749	7.53620325307991	7.43193916221462	7.54478365777747	7.13754123165678	-0.319454171390362	0.20238953730468	0.592222134619771
Merged-chr16-11468934-2	chr16	11468434	11469434	+	636.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	63286.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.26576134316169	2.92110274632713	3.22694490301679	2.87207668114701	2.95285730250982	3.29770649220279	-0.424534121143746	0.547666893552086	0.859390921292369
Merged-chr6-122652722-2	chr6	122652222	122653222	+	737.666687	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	26298.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	5.82734277914003	5.71592696067852	6.06016564845136	5.91681429490316	6.11640518484569	5.8925307603839	0.214288516122624	0.488633313931711	0.829408583080924
Merged-chr4-3681737-4	chr4	3681236	3682236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3615.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	7.22962071221822	7.22412521875792	7.31010299270411	7.26739535784756	7.62127159645258	7.34511977927777	0.259141698966745	0.284817080424757	0.682457480121006
Merged-chr17-31019709-3	chr17	31019200	31020200	+	742.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37994.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	5.07688390909957	4.92931951705932	4.70343544275585	4.62374861557311	4.83748026249854	4.460573299188	-0.582961504529745	0.1697491680411	0.546846133197718
Merged-chr6-29484845-4	chr6	29484306	29485306	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 34 of 37)	intron (NM_001029985, intron 34 of 37)	13369.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	6.18700511855345	6.57912296947385	6.34696290193106	6.47625945782526	6.51615953126544	5.70112781680669	-0.143376296599032	0.683085971494325	0.91523316791368
Merged-chr17-56218930-4	chr17	56218433	56219433	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172624)	promoter-TSS (NM_172624)	-44.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	5.93261659371876	5.69983902439218	6.25040308626183	6.55634982003806	5.7878011171507	6.23239232047514	0.435190693069503	0.226326588371866	0.621278132925779
Merged-chr9-64173506-4	chr9	64172996	64173996	+	986.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	109.0	NM_024212	67891.0	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	7.67759173176198	7.93666352919888	7.97938639380004	7.91422651916354	8.06958722828807	7.9224023481986	0.149909764231701	0.505454715384189	0.838131669576059
Merged-chr1-92753438-3	chr1	92752956	92753956	+	604.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78189.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	3.79917415217677	3.50223507128654	4.01833429597884	3.2685770284432	3.34775967747314	3.81772823416881	-1.0050669064598	0.11350757397081	0.450160309091308
Merged-chr4-89294767-4	chr4	89294290	89295290	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	-171.0	NM_009877	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	5.78193664730631	5.91327890613441	5.69216364239578	5.3757391633501	5.586925488971	5.77972555033918	-0.404026105939021	0.216397242327692	0.609896749639353
Merged-chr4-141722543-1	chr4	141722043	141723043	+	728.0	f1_c57bl6.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	876.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	7.15010453742598	7.36648537867292	7.14861455986778	7.58315428446146	7.85141058263619	7.40757038249122	0.596774183150963	0.0175561085048405	0.148004931759956
Merged-chr5-36750585-4	chr5	36750076	36751076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-1897.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.06081763768395	2.91930915932721	3.34218895581555	2.935449575982	2.97172514171697	3.02801668482768	-0.607792818365853	0.377450347998146	0.759886974818653
Merged-chr2-153742022-3	chr2	153741522	153742522	+	910.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007896, intron 1 of 6)	intron (NM_007896, intron 1 of 6)	735.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	7.83198247201895	7.77056887669179	7.41306472082372	7.80043921284914	7.77158231362299	7.79805043483159	0.137816693303389	0.558036946838448	0.864474137025359
Merged-chr17-24696759-1	chr17	24696259	24697259	+	587.0	f1_balb.idr	promoter-TSS (NM_023040)	promoter-TSS (NM_023040)	525.0	NM_001357836	71893.0	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	5.33979299469422	5.25131693964929	5.45687421652921	4.98179237923199	4.9485729272272	5.40759886224067	-0.472871500490522	0.205360111217707	0.596047563330878
Merged-chr1-51526008-2	chr1	51525508	51526508	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-47609.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	3.18635964385718	2.98827475330012	3.19941756034881	3.07899642796526	2.7206564559652	3.15890239294382	-0.593319387638133	0.408098890589745	0.781926100186554
Merged-chr11-59808608-2	chr11	59808108	59809108	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073164, intron 1 of 12)	intron (NR_073164, intron 1 of 12)	993.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	5.09935508282025	5.12056691896089	5.10778886773754	5.1295908791888	5.02535971860183	5.38843349786354	0.141595842429841	0.698800741579747	0.920452394037037
Merged-chr10-127339047-4	chr10	127338633	127339633	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	2446.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	2.50474430850021	2.36777503360104	2.61940689129201	2.49595939693564	2.50113402025118	2.50516000844452	0.0227722141158768	0.977095920430259	1
Merged-chr16-4682411-2	chr16	4681911	4682911	+	570.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1659.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	4.17966709393875	4.48112606137678	4.31579999187795	4.55315049014787	4.76632610370543	4.75637334985931	0.894611034803348	0.041832142415429	0.255882445497538
Merged-chr6-134333329-1	chr6	134332829	134333829	+	577.0	f0_balb.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-63000.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	3.84169069665407	3.98180279161346	3.77267628669095	3.62119024677032	3.47925213944737	3.68548564328826	-0.95326844900178	0.0811272020005133	0.376836685336852
Merged-chr17-34118223-8	chr17	34117710	34118710	+	879.9791869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204973, intron 2 of 12)	intron (NM_001204973, intron 2 of 12)	1690.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	5.61238264919113	5.38181029766883	5.80622832331801	5.94191883251763	5.8144322369963	5.74196400540602	0.433941832596823	0.183108563172276	0.566085379224821
Merged-chr2-33098023-3	chr2	33097547	33098547	+	861.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-10794.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	3.07258391259267	2.90787371349362	2.87480150444681	2.90697102234618	2.85073028064239	3.06763865852946	-0.0848571920689972	0.902578173441304	0.977556096317705
Merged-chr2-18916241-3	chr2	18915740	18916740	+	642.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81881.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	3.84875281160441	3.91877556259467	3.70346418880372	3.93175312047148	3.70971991384435	3.5464220256648	-0.285023369476073	0.605282891810071	0.883508093355536
Merged-chr17-34915532-4	chr17	34915022	34916022	+	808.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023557, intron 1 of 20)	intron (NM_023557, intron 1 of 20)	1056.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	2.50829818480095	2.30039819971014	2.72525646091685	2.43043906492806	2.26398656034363	2.29558977956845	-1.18209983369129	0.174016732012071	1
Merged-chr8-72303835-4	chr8	72303358	72304358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15204.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.84905949070128	5.77097242940402	5.7606043578439	6.28001429656751	6.62216692577279	6.41865715033642	1.11667598334451	0.000139193077556486	0.00373924899251632
Merged-chr7-109629003-4	chr7	109628509	109629509	+	882.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11862.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	3.45482564378463	3.34183366195879	3.45708424984351	3.23856484834034	3.29057796707749	3.12412874759458	-0.770319479052735	0.215285272515119	0.608656770624521
Merged-chr7-127800552-4	chr7	127800033	127801033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133943)	promoter-TSS (NM_133943)	-76.0	NM_133943	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	4.82132231132393	4.70629249077904	4.90351605224794	4.82291541397133	4.69246258643772	4.82286458125176	-0.0713077428995545	0.856169450399488	0.966380145257578
Merged-chr2-167751756-4	chr2	167751259	167752259	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	60582.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.02620158828697	5.74562944962952	5.87842686739074	5.91528497500554	5.80306009652639	6.13946038854473	0.106887331840857	0.731937513473282	0.931624013294247
Merged-chr17-72961069-4	chr17	72960566	72961566	+	962.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	42761.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	3.45706817700523	3.24194478075307	3.4826519234026	3.16959686932451	3.19827726919568	3.16185374043126	-0.887039371216949	0.158100695148814	0.529748425157756
Merged-chr5-4934737-3	chr5	4934224	4935224	+	736.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-176508.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.23931338047822	4.17254766215847	3.92594072165648	4.04368515712272	4.16734124026941	3.94404902046055	-0.186456271767579	0.707765836783318	0.923531861546016
Merged-chr4-84884367-4	chr4	84883868	84884868	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177385)	promoter-TSS (NM_177385)	59.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	5.32974561929658	5.1382069008189	5.20840379181651	5.44736528215016	5.16503698393236	5.30469425050445	0.156678026785998	0.658307646179983	0.904992195604343
Merged-chr10-116572143-4	chr10	116571629	116572629	+	928.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	8407.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	5.90667654878921	5.69751917639757	5.84692168694525	6.16191127526567	6.17055646200735	6.28000023823296	0.664430078831678	0.0232813123409141	0.178580428636446
Merged-chr10-80587611-3	chr10	80587111	80588111	+	818.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145421, intron 1 of 4)	intron (NM_145421, intron 1 of 4)	2730.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	3.44806098801939	3.48121171716204	3.78235544295596	3.83382012602575	3.50795783676531	3.99029133136651	0.720387107324094	0.218196165715622	0.612414823722149
Merged-chr14-55713197-2	chr14	55712697	55713697	+	856.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019984)	promoter-TSS (NM_019984)	-109.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	4.05091613606898	4.22422185652238	4.68503017726697	4.59113196997072	4.36125571248058	4.71378735699184	0.559000307131433	0.250474185456393	0.647815053755309
Merged-chr12-91590230-6	chr12	91589691	91590691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031391)	promoter-TSS (NM_031391)	296.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	8.21639842791585	8.51421078809886	7.95367914064985	8.0009319843121	8.1570450128755	8.03265145629391	-0.265761378719214	0.273051059156037	0.670306314508203
Merged-chr7-16254464-4	chr7	16253966	16254966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4872.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	7.27699850356946	6.66516580519395	7.06428893249502	7.08770600592024	6.94710096730507	7.1954653367079	0.0744776434048796	0.791634935370721	0.949797147757395
Merged-chr3-8098530-3	chr3	8098001	8099001	+	589.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-143614.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	3.69951923973157	3.89299486443452	3.87356187375994	3.62693981230849	3.8145570696303	3.51610253934289	-0.511212206280647	0.358689886126217	0.7450533198301
Merged-chr2-154570019-4	chr2	154569505	154570505	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291105)	promoter-TSS (NM_001291105)	-113.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	6.3386913261342	6.03174262953546	5.98027622490768	6.2203440400371	5.76763895651861	5.8698491328326	-0.288431257301524	0.371826610917827	0.755841610252976
Merged-chr17-8284544-3	chr17	8284044	8285044	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018819, intron 1 of 3)	CpG	731.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	6.27622912578267	6.26942306730116	5.98869057129483	6.49094483375309	6.22107686527166	5.69697953614551	-0.00455460858956271	0.989309139743015	0.997591975441369
Merged-chr7-142373480-2	chr7	142373004	142374004	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347541, intron 1 of 2)	intron (NM_001347541, intron 1 of 2)	242.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	4.43140924391115	4.00767623367003	4.27056805437756	5.94887845173918	6.00511552493566	5.32461762844465	3.47654718200929	9.83728840706238e-14	2.26116324247195e-11
Merged-chr5-66081183-4	chr5	66080663	66081663	+	898.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17016.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	5.48546908003996	5.50192680489266	5.43553664261501	5.59634031292334	5.66631695003972	5.7467551165685	0.35843394118559	0.261111317782917	0.658639783250402
Merged-chr12-111035353-4	chr12	111034861	111035861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4437.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	4.45254136461222	4.51927183566946	4.5173737764465	4.63812673331532	4.7719901412846	4.7437369170638	0.544432229748972	0.18443222576694	0.568147667306489
Merged-chr17-33920400-4	chr17	33919886	33920886	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009318, exon 3 of 8)	exon (NM_009318, exon 3 of 8)	908.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	8.01425979634622	8.26172255628179	7.76728082387928	7.83142971586136	8.39665076315129	8.00161546247264	0.0996921919150467	0.710187325638369	0.924281856562368
Merged-chr1-107589978-4	chr1	107589491	107590491	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011459)	promoter-TSS (NM_011459)	-15.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	5.06404808092314	4.96861468259678	4.49909190981033	5.08696431738749	4.48906438341643	4.6592572650082	-0.232871823482717	0.613198849089651	0.887079693922802
Merged-chr17-24804317-4	chr17	24803824	24804824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029197)	promoter-TSS (NM_029197)	-58.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	5.37265723325083	5.17786724555632	5.12443146446566	4.4984268164465	4.63352997510357	4.5300743908524	-1.50374419694262	0.000163571999928307	0.00426082412450528
Merged-chr6-55230653-2	chr6	55230153	55231153	+	669.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 5 of 17)	MIRc|SINE|MIR	27270.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	3.27829496380346	3.05610497187599	3.19404957205329	3.48514846940153	3.5976844221404	3.98329995921814	2.00144244756334	0.00202822712405512	0.0312874902740783
Merged-chr15-59599683-2	chr15	59599166	59600166	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026746, intron 6 of 6)	L2b|LINE|L2	-48988.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.35964358578353	5.45431398142454	4.87372445216048	5.24033694404084	5.38309262424486	4.85759728679663	-0.148468958883435	0.718252653815404	0.927293456311605
Merged-chr18-84688511-4	chr18	84688020	84689020	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2818.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	4.09446165074201	4.24707008191424	4.22537021173587	4.26735423793708	4.45732637980512	4.10174274631333	0.28611385745067	0.544892485292595	0.857896259450602
Merged-chr19-10959755-4	chr19	10959234	10960234	+	723.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10468.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	2.49939326938446	2.32220797522134	2.3511108502444	2.53737537120668	2.4409044319367	2.80238465135542	1.21378438436892	0.14626936977837	1
Merged-chr11-121713755-4	chr11	121713198	121714198	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	11271.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.43776234187627	6.61995991239135	6.35706129842405	6.40375728215511	6.66753793678822	6.27441976069441	-0.0174273138710045	0.951335149164908	0.988766557938178
Merged-chr18-88824731-4	chr18	88824230	88825230	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	69477.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.09170558148957	5.21170863575572	5.48025610544614	5.37368261185036	5.08808384315374	5.11329843505772	-0.127710698479253	0.730038705766548	0.930736680834301
Merged-chr16-10451363-3	chr16	10450819	10451819	+	873.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3957.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	3.66210679079925	3.85275107617189	3.61701479059972	4.29077696465817	4.08189932286658	3.86038522993884	1.14794535817822	0.033757114116009	0.224643759066648
Merged-chr19-5388737-4	chr19	5388209	5389209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016882)	promoter-TSS (NM_016882)	-6.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	6.93765188755881	6.76322415610227	6.98849600636485	6.76941078144652	6.9791220599979	6.7746040647892	-0.0681767639002728	0.789241127193915	0.949154090987258
Merged-chr7-142384063-2	chr7	142383570	142384570	+	848.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3800.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	4.62850552785418	4.36026564538779	4.38557591817302	5.28072233967851	5.29791581242697	5.23581884771414	1.79953181408778	8.02504259734739e-06	0.000330895809930665
Merged-chr12-16879503-1	chr12	16879003	16880003	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-15475.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.42374587568171	6.48343832505592	6.38149452802493	5.19501558091193	5.55810370383038	5.75107033421403	-1.60796892894808	5.78584248674853e-07	3.34093255820522e-05
Merged-chr13-52603893-2	chr13	52603393	52604393	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	7011.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.8345678582927	6.92194168703371	6.58649027524212	6.06156726873107	6.19627721508454	6.15997908411838	-1.06053539288741	0.00011627264302741	0.00321957207355232
Merged-chr4-133676982-2	chr4	133676482	133677482	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-3816.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.67090888984881	3.38655810407526	3.34199243864631	3.29391594461336	3.38406350673547	3.6309530484774	-0.15177853909634	0.804418260701482	0.953645244705356
Merged-chr17-64602104-6	chr17	64601514	64602514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	CpG-6542	365.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	8.3954679472856	8.66784797384177	8.29120998719421	8.03604048922912	8.38021279297556	8.00121545047832	-0.430461232439537	0.0736710509995733	0.356707641057462
Merged-chr6-129363430-4	chr6	129362932	129363932	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	Lx7|LINE|L1	13188.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	5.46684271761273	5.07470746961451	5.35270136844843	5.15401756341279	4.87460647705545	5.23220002988487	-0.454217557461169	0.231487600345863	0.62745071742539
Merged-chr15-64031877-1	chr15	64031377	64032377	+	635.0	f0_balb.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	27887.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.12598138704466	4.11115291146057	4.13567813717207	4.16534476295835	4.13995989628204	4.33689518378384	0.242580268884123	0.603466475925921	0.882606315981931
Merged-chr1-187226254-2	chr1	187225754	187226754	+	672.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357646, intron 2 of 7)	(TCC)n|Simple_repeat|Simple_repeat	10511.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	3.40956784165172	3.73028733323827	4.04625930263979	3.76778810119502	3.52334273964248	4.19638099053454	0.326952482348972	0.598771304492662	0.880808927175713
Merged-chr4-21776879-2	chr4	21776379	21777379	+	593.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_152825, intron 1 of 17)	intron (NM_152825, intron 1 of 17)	609.0	NM_152825	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	6.47131114547087	6.70780854377146	6.63365934643391	6.99343794443983	6.90534312823848	6.24669452830477	0.251666237839242	0.417080191501231	0.787792972496192
Merged-chr11-5261762-4	chr11	5261262	5262262	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032396)	promoter-TSS (NM_032396)	-152.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	6.57529299724692	6.16807621055302	6.17082729340763	6.32740574875464	5.76954738047219	5.70902832062085	-0.595672635371639	0.0836005880860575	0.382673436762277
Merged-chr8-82941802-4	chr8	82941274	82942274	+	963.125	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 1 of 6)	L1MB2|LINE|L1	78418.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.02070700896209	5.74675564594865	5.62762943874034	4.67836400993675	4.33287152013708	5.0837241138896	-2.28887264495565	4.53160561765039e-08	3.55052580257489e-06
Merged-chr13-52600480-4	chr13	52599979	52600979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	3597.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	6.7387608379854	6.66705346564345	6.66079431107622	6.48743473130972	6.60277117945422	6.01393909835016	-0.449386296204032	0.128115064278344	0.47875529283893
Merged-chr15-89430890-4	chr15	89430386	89431386	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-959.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	6.09115356810497	6.24085746922604	6.23686223640971	6.12193153731944	6.598893783452	6.33660748696497	0.309783757297315	0.297275965641787	0.693896220958072
Merged-chr7-100589878-2	chr7	100589378	100590378	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	1536.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	4.54316310214201	4.83466831823079	4.74457798949121	4.73520708662786	4.7368594010633	5.05540266275042	0.293095069927037	0.477058622404038	0.823105666092879
Merged-chr5-67892388-4	chr5	67891874	67892874	+	895.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44943.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.98532552097334	3.78872415949764	4.10548076131192	4.27028419812357	4.12231009923703	4.07966112187635	0.591361276709564	0.232009222221955	0.628214232432295
Merged-chr9-72089123-4	chr9	72088624	72089624	+	916.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011544, intron 3 of 20)	L1MEc|LINE|L1	22077.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	3.71853264571714	3.57843539518824	3.61251872726806	3.51784240933102	3.45398633184435	3.6300030344067	-0.387111111493386	0.489743860925582	0.829883658762949
Merged-chr15-44427993-4	chr15	44427493	44428493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-118.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	7.78944713087054	7.68849985832961	7.56967544242942	7.6954505593054	7.76190586026473	7.53662543203106	-0.0234658636375785	0.917359099098656	0.981588017376699
Merged-chr11-62554135-3	chr11	62553664	62554664	+	889.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_002875)	TTS (NR_002875)	2433.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	4.84372763249842	5.09624157141173	4.97162586571101	4.91929713454787	4.87614416131002	5.10386020048107	-0.0313107290933918	0.934670478064325	0.985727536128156
Merged-chr4-139308772-1	chr4	139308272	139309272	+	546.0	f1_c57bl6.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	1936.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	4.66551631624349	4.63472193865597	4.69632429261318	4.41870514709203	4.56057531582444	4.47669069007634	-0.422304557876935	0.310651602488306	0.70601423883807
Merged-chr11-23634591-2	chr11	23634091	23635091	+	632.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-960.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	3.05373440150175	3.42820543802929	3.2810500288086	2.87899722702389	3.13053497123919	3.18355773554058	-0.828231557956885	0.228751098981195	0.624004805277215
Merged-chr17-72940346-2	chr17	72939846	72940846	+	733.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	22041.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.4526576002798	4.27124683405124	4.40263162605718	4.11195627311727	3.95455220513147	4.25395367539223	-0.757548901175054	0.107469026143673	0.437767793966945
Merged-chr13-43772039-4	chr13	43771559	43772559	+	914.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13053.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	4.13671697638407	3.81777251417677	3.55398721354551	3.922411250697	3.66685420265113	3.74263064339493	-0.270248491397111	0.637301669557675	0.897338937840938
Merged-chr1-93070691-2	chr1	93070191	93071191	+	813.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	11789.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	6.78378434964162	6.80934302951417	6.8081336608335	6.49374051482767	6.51117224363924	6.22357620033469	-0.593358812433898	0.0252080209262377	0.187948835594121
Merged-chr4-53050765-2	chr4	53050265	53051265	+	910.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 35 of 49)	intron (NM_013454, intron 35 of 49)	38885.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.38713091871839	2.61335785229466	2.52622023626	2.66011250364718	2.3575872123265	2.66368814713729	0.302357131478089	0.711322249917579	1
Merged-chr18-38340310-2	chr18	38339810	38340810	+	904.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1317.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	3.00549879002042	2.65871120691908	2.89483920239001	2.80863487437603	2.73009889959443	2.84664677222146	-0.339321194421817	0.643410211431205	0.899801366759477
Merged-chr5-142903207-1	chr5	142902707	142903707	+	591.0	f0_c57.idr	TTS (NM_007393)	TTS (NM_007393)	3547.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.67932320468364	3.92145985038335	3.84167425790314	4.15344579883741	4.09700877009957	4.10873899315207	0.909876121417371	0.0714053428279378	0.350613464299956
Merged-chr13-116964644-2	chr13	116964144	116965144	+	661.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	60872.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	3.34333732902394	3.33071209636155	3.49149388776761	3.87890660202525	4.28679983225342	4.08284340553959	2.50032200995199	2.01038182899606e-05	0.000733361908053942
Merged-chr5-95934607-2	chr5	95934107	95935107	+	789.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22332.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	5.42263689773041	5.6141253524608	5.67634507115644	5.0435914461204	5.06821321330633	5.61184249038322	-0.621888947058123	0.0965276088851962	0.414184678223979
Merged-chr18-34338872-3	chr18	34338375	34339375	+	649.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	7730.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	2.36147429293731	2.36485052681574	2.58609845302351	2.5082668932102	2.32463226647354	2.59843268159327	0.247342186586187	0.762462865407715	1
Merged-chr1-180826901-6	chr1	180826415	180827415	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-13310.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.57953775864286	4.840483749982	4.89674600572664	5.01009615627953	4.79825283234394	4.92581711481124	0.306434561355528	0.442175287170356	0.803119734891971
Merged-chr11-101984839-4	chr11	101984328	101985328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-37.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	8.39502726622678	8.27325803930722	8.08571641352303	8.18286579619476	8.33233787067774	8.0237350278195	-0.0990273473609533	0.66008421806966	0.905863036303276
Merged-chr15-74926920-5	chr15	74926509	74927509	+	986.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-28042.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	6.28259213213361	6.19677326898878	6.08502223326602	6.95250441094304	7.45079771045433	7.03735599734616	1.53745807475994	6.92471216359549e-08	5.13082323872176e-06
Merged-chr15-72837954-3	chr15	72837458	72838458	+	855.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27634.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	6.00082542449363	6.08157318611718	6.16032087490176	6.75003106398066	6.81605379929248	6.53389803009428	1.03838377171001	0.000143283977417081	0.003823027037177
Merged-chr13-37666526-4	chr13	37666063	37667063	+	847.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-159475.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.81045305395679	3.54919426399463	3.80752370703112	3.42668176976077	3.14674341215354	3.73140822107836	-0.992824690950427	0.115375015863808	0.45354203807794
Merged-chr5-67821441-4	chr5	67820919	67821919	+	991.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	C-rich|Low_complexity|Low_complexity	26012.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	7.36389097185887	7.54805752363773	7.1124581312254	7.34959333477479	7.75446927837844	6.98736077298378	0.0813630405349857	0.783969919744529	0.947376685867648
Merged-chr18-23752297-4	chr18	23751804	23752804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	1.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	7.4610342737702	7.55947628403953	6.93552584094279	7.08966315866427	7.13819762275131	7.064802551427	-0.386280890034031	0.153641011455135	0.522591721422511
Merged-chr17-43591841-2	chr17	43591341	43592341	+	829.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045444)	promoter-TSS (NR_045444)	-332.0	NR_045444	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	2.96116771592888	2.63758187850006	2.87528077650526	2.6942493309855	2.6825846109642	2.94768680069078	-0.282729064929949	0.70553409774487	0.922833138890237
Merged-chr15-93399373-3	chr15	93398860	93399860	+	856.7222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001358749, exon 2 of 9)	5' UTR (NM_001358749, exon 2 of 9)	896.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	5.29538906671357	5.7405326268792	5.63231535526023	6.34100639346674	6.35404524321824	6.09553001963252	1.23689223301179	0.000123996376859086	0.0034028662683677
Merged-chr11-89016843-1	chr11	89016343	89017343	+	919.0	f1_c57bl6.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	17440.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	3.76348686283493	3.59424220120024	3.95330511997737	3.72630944622879	3.49295994383702	3.78383644104436	-0.350614606264319	0.531347074023235	0.851563538113703
Merged-chr12-85477471-4	chr12	85476950	85477950	+	964.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010234)	TTS (NM_010234)	3560.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	3.66260064683867	3.61003950371833	3.39289674215431	3.45167509703568	3.18318429169325	3.348416309043	-0.905560434757203	0.137893787041284	0.496333880789271
Merged-chr17-46302093-4	chr17	46301591	46302591	+	898.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001286013, intron 5 of 5)	intron (NM_001286013, intron 5 of 5)	4163.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	3.57240320365505	3.40658795097626	3.6110540770682	3.46779377048056	3.57331697705336	3.46601852027879	-0.0803430189789397	0.88876242821579	0.974158138411807
Merged-chr11-95714091-4	chr11	95713590	95714590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1336.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	6.52996832814524	6.63812213868146	6.43018009092783	6.63794916572687	6.85330378870109	6.45180975770722	0.205211828806656	0.455900501332973	0.811226399959668
Merged-chr10-51489200-3	chr10	51488736	51489736	+	578.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-1662.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	4.33553652276073	4.61737682007424	4.59833310321482	3.77391727399602	3.83641367910416	4.62695831139856	-1.02095941403137	0.0717242086195296	0.351391188813814
Merged-chr6-108721816-3	chr6	108721319	108722319	+	778.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-60885.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.72019170867493	3.31542967909946	3.35177092416625	3.46733191075809	3.4971137871402	3.42449285264795	-0.0601736059431101	0.921294871675544	0.982526400261012
Merged-chr1-136018031-4	chr1	136017524	136018524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001160146)	promoter-TSS (NM_001160146)	23.0	NM_025439	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	3.70953117503187	3.5683580510607	3.67760736603351	3.39897572866582	3.27117635835971	3.59326632895664	-0.861762156236566	0.141370560168607	0.502119843364898
Merged-chr18-49552965-4	chr18	49552469	49553469	+	928.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	29680.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	3.06753834711249	2.989910764039	2.9950302899861	3.22301237152271	3.14723170746582	3.12831913575671	0.662529996189206	0.308413022984317	0.704469935667044
Merged-chr4-155068714-2	chr4	155068214	155069214	+	671.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001042407, exon 3 of 6)	exon (NM_001042407, exon 3 of 6)	1684.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	4.30238315315919	4.06714705161322	4.13713009763243	4.43366986074487	4.46777082174299	4.47648317600932	0.754320582026205	0.0961517085374424	0.413411154195982
Merged-chr4-116052876-4	chr4	116052372	116053372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028142, intron 1 of 5)	intron (NM_028142, intron 1 of 5)	1004.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	6.60463726881042	6.65704691025093	6.09514621070621	6.67709430719692	6.98320990550486	6.35978319460954	0.352748891878696	0.274729874165573	0.672147114659483
Merged-chr14-120741861-4	chr14	120741351	120742351	+	931.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-169343.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	4.30589843575418	4.66903199772387	4.70553463366846	4.44650637306715	4.12643542448503	4.58146359232617	-0.454711457479917	0.332630023224387	0.723716858669256
Merged-chr7-27446833-4	chr7	27446299	27447299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032610)	promoter-TSS (NM_032610)	-210.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	5.72600464145443	5.1728674695061	4.88436421335575	5.29538227044437	5.10785449581515	4.68809345147812	-0.521732939793388	0.249261858926251	0.646184402203805
Merged-chr8-34918625-4	chr8	34918106	34919106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 2 of 26)	intron (NM_175091, intron 2 of 26)	47084.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.86198945510302	5.22921578968489	4.61817504259694	4.37826955818958	3.91083680084156	4.42355636290677	-1.70154620443938	0.000505519103675739	0.0105819455543776
Merged-chr4-155841197-4	chr4	155840724	155841724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024263, intron 3 of 9)	CpG	1544.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	5.68154637776396	5.56733868581641	5.42034637072551	5.07378198319255	4.86213312698156	4.97932624628741	-1.21045304085727	0.000660691661341308	0.0130861299111849
Merged-chr7-101362903-4	chr7	101362407	101363407	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14838.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	9.00543189963909	9.09451058078975	8.5203749203933	8.72478299318817	9.15600880490099	8.52471043635736	-0.0904593991922158	0.739000786340809	0.934148435497263
Merged-chr4-9116016-4	chr4	9115501	9116501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153292.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	6.20761115598113	6.58011515094379	6.43900239717174	6.53323210971898	6.69590532287498	6.40454109902541	0.224849270788991	0.428436718232981	0.795300891260009
Merged-chr6-5390389-3	chr6	5389895	5390895	+	998.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355662)	promoter-TSS (NM_001355662)	-15.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.0390969399686	3.82166215789375	3.54839053323597	3.65260961275167	3.63090932990423	3.62130072591146	-0.636017582754435	0.260606907975028	0.658045689278249
Merged-chr4-135273533-2	chr4	135273033	135274033	+	765.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-773.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.36379781085072	6.36674437087915	5.87268874307905	5.81869989896419	6.14678412173299	5.80297495700017	-0.498220124576902	0.128511673817789	0.479537170053842
Merged-chr4-142018568-2	chr4	142018068	142019068	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	670.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	7.95132271700259	8.31437219004984	7.93156432153798	8.22302139230498	8.38234542699172	7.64909808838804	0.0688746037125342	0.80477184206829	0.953651704501661
Merged-chr12-117566540-4	chr12	117566094	117567094	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	50115.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.73264893439589	5.61238658735786	5.47973819795347	6.321462489556	6.41410047482049	5.93937285880805	1.10439932928357	0.000551440272175699	0.0113434467656849
Merged-chr1-52232438-4	chr1	52231945	52232945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081081, intron 1 of 17)	CpG	787.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	7.88525383899765	7.94608621123245	7.75222276770924	7.74483488638048	7.79909547549893	7.77408290958686	-0.135580421323689	0.528886346586179	0.850585575598857
Merged-chr4-126104473-1	chr4	126103973	126104973	+	673.0	f0_balb.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	516.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	7.79806099998293	7.76233340010794	7.61653106589512	7.63417440900703	7.46827328579118	7.42009308231891	-0.318484918737098	0.158672759646504	0.530447689219215
Merged-chr5-110449309-4	chr5	110448798	110449798	+	916.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-795.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.74219379916108	4.64646988348262	4.92734340040473	4.97383440903204	4.81594621744209	4.55954991916979	0.074355758640342	0.857104209897778	0.966681760410265
Merged-chr15-34046545-4	chr15	34046036	34047036	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36183.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	6.48543779479833	6.27795458549602	6.36563604421471	6.43405563548483	6.27696258098344	6.49806445592004	0.0320459811616103	0.90715985391173	0.978868492078838
Merged-chr12-75735096-1	chr12	75734596	75735596	+	932.0	f0_balb.idr	exon (NM_030750, exon 1 of 3)	exon (NM_030750, exon 1 of 3)	633.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	7.65756807533105	7.91174360414585	7.59417165860023	7.68979158667766	7.77624020315149	7.51063352001915	-0.0928980848990183	0.694203728197749	0.919210273513843
Merged-chr6-50305129-4	chr6	50304616	50305616	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-43347.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	6.49275942718101	6.79239307773938	6.64173093192283	6.75065983345909	6.93649941548581	6.96799609845683	0.371052935592561	0.157470034076969	0.528765125333521
Merged-chr9-75559581-4	chr9	75559037	75560037	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_016963, exon 1 of 10)	5' UTR (NM_016963, exon 1 of 10)	120.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	7.32669856883118	7.5200474893156	7.43939621132081	7.32787320150821	7.49184390906903	7.48622618763872	0.0091917880980207	0.968135952047513	0.992682259282642
Merged-chr19-11812058-2	chr19	11811558	11812558	+	592.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	7345.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	4.08377668098109	4.07160064218681	4.29281651752023	4.17742828531547	3.93532901553598	4.27428983495715	-0.054587009511173	0.910912463929191	0.979996676367672
Merged-chr1-134077856-4	chr1	134077340	134078340	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	1315.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	7.2129993616842	7.62076841490787	7.18784244314385	7.04818928795065	7.26635675870019	7.34939282287175	-0.204511053204348	0.436746290657893	0.799612421956124
Merged-chr2-167368623-4	chr2	167368108	167369108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19430.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	7.21766008088129	6.80295281158574	6.41528844652786	6.73267872640368	7.02613809064265	6.57239840864803	-0.101396241849353	0.75225813550388	0.938157651950668
Merged-chr14-20655950-3	chr14	20655414	20656414	+	859.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021508, intron 1 of 5)	intron (NM_021508, intron 1 of 5)	626.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	5.73396479144981	5.82339721078465	6.07631388407473	5.70893143320669	5.41258104570238	5.92175405663844	-0.350611306145662	0.299968236490874	0.696693937976124
Merged-chr2-44922694-4	chr2	44922193	44923193	+	851.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-61071.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	6.1898983348609	6.52120647333766	6.37838077431822	6.14647834873864	6.60301894228792	6.15169687675041	-0.0633162834801294	0.837459347133782	0.962133986386607
Merged-chr14-48459098-4	chr14	48458592	48459592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12740.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	6.93073378268836	7.11175628595103	7.0616117301459	7.00455158972337	7.19633771417779	7.30807489965834	0.206656944005519	0.401799335890564	0.777753227258936
Merged-chr3-21988789-2	chr3	21988289	21989289	+	745.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-87863.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.87004118321254	4.3867941471413	4.02567775000093	4.22770445370594	4.08596051956368	3.88680970254685	-0.11733808729873	0.823832279084157	0.958451755471188
Merged-chr15-98517524-4	chr15	98517001	98518001	+	929.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001289437)	TTS (NM_001289437)	2333.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	4.65958706331761	4.85988970536336	4.79609664525783	4.8479030561205	4.95352821210667	4.66188351026214	0.142519168932876	0.722035024108409	0.928665377061702
Merged-chr1-84428834-3	chr1	84428303	84429303	+	799.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-144158.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	4.04507383971663	3.82793185996193	4.13801007880828	3.98118953436282	4.04409866076801	4.20528952195452	0.211372427527059	0.671212629718234	0.910369533221321
Merged-chr7-105766871-2	chr7	105766371	105767371	+	974.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 2 of 20)	Tigger17a|DNA|TcMar-Tigger	-14636.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	2.93573109266132	3.03727344639582	3.01700409957406	3.1865158270085	2.99892918479788	3.08952786191666	0.433007564460952	0.513470459889649	0.842597552908258
Merged-chr12-85288066-2	chr12	85287566	85288566	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	-525.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	7.15582818866203	7.30141835246174	6.81347392524885	6.58957584747855	6.54623953705379	6.41712305200136	-0.919267006575665	0.000722404013808507	0.0139985545367905
Merged-chr12-101956627-2	chr12	101956127	101957127	+	846.7333369999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_029705, intron 1 of 10)	RMER10A|LTR|ERVL	1616.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	4.45830169363645	4.10043594130286	4.44981199981818	4.29437116267089	4.34159510114717	4.5949919881426	0.175618982500746	0.705934878002368	0.922834459892351
Merged-chr4-6415420-4	chr4	6414898	6415898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38873.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	7.17829472616429	7.2311348565367	6.91185223113586	6.97830808377375	7.12350730435959	6.73550105146294	-0.236142194469015	0.369677069218516	0.754293515829679
Merged-chr16-95728992-4	chr16	95728495	95729495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	26588.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	6.53737508334406	6.18558108677879	6.12497029523665	6.54998308259854	6.21462256168574	6.22966123623602	0.0634687561513971	0.834413228020606	0.961299492933729
Merged-chr10-8846375-3	chr10	8845851	8846851	+	822.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	39719.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.87253797469185	4.72252311063293	5.24948797199764	4.97650563940403	4.72469286074764	4.60910838036153	-0.385224815232202	0.36406098850047	0.749506067524733
Merged-chr5-135461067-6	chr5	135460648	135461648	+	853.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-66602.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.48977575458358	6.49899419634916	6.89486798027063	6.65431366043208	6.89153272853084	6.70421783832913	0.202477933651986	0.465708921156926	0.817146354802119
Merged-chr11-102298165-2	chr11	102297665	102298665	+	780.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	-1536.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	5.40461566391954	5.74464532636918	5.97896726899029	5.70866917959033	5.73096783133809	5.65379333128978	-0.0360534084509446	0.915251331128798	0.980959026698783
Merged-chr17-57250548-2	chr17	57250048	57251048	+	808.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	1097.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	2.45907520566309	2.66231411207849	2.64552949008176	2.52093254752552	2.35503905704798	2.5310851687859	-0.743934976416397	0.354437083773103	1
Merged-chr10-127479418-3	chr10	127478898	127479898	+	713.777771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359246, intron 13 of 23)	B3|SINE|B2	-22288.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	4.03085901456615	3.74284381073956	4.09307379796155	3.7826909576345	3.61240891306811	4.20289631246559	-0.245449467971634	0.661882975952779	0.906495637422278
Merged-chr2-27312720-2	chr2	27312220	27313220	+	595.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-65417.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	5.16626533273618	5.39052321018763	5.37118858793374	5.26370380733376	5.28001368796282	5.21461464587763	-0.11093433503073	0.749522709884416	0.93736827370126
Merged-chr13-23424706-4	chr13	23424226	23425226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-860.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	4.93889857788147	5.20098232820289	5.20129267485046	5.38051276064444	5.47593293612558	5.68937726829807	0.79276081603435	0.0259986033859426	0.191238666065904
Merged-chr6-90712170-2	chr6	90711670	90712670	+	715.722229	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	4359.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	4.39151210204457	4.28154042729835	4.60521212911023	4.08416139896325	3.74104502240361	4.44198648973361	-0.864917472831815	0.0997421933874395	0.421136841555491
Merged-chr9-32499395-2	chr9	32498895	32499895	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	42057.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.47632980610355	4.47280512167664	4.42835461012562	4.46214278165089	4.09119805387455	4.49529154341642	-0.282286326007252	0.53697631576118	0.854250636315698
Merged-chr7-126746997-4	chr7	126746548	126747548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12578.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	7.98264548213743	7.97338091247609	7.98144770025763	7.83749066570067	8.13192371099718	8.19498142737579	0.119494622336775	0.592073155712486	0.877901939528566
Merged-chr1-7086177-4	chr1	7085694	7086694	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2726.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.6279166578524	4.08816321096233	3.68670211334745	3.63756358403417	3.49163578070589	4.00338900076451	-0.327897669958311	0.580253163389565	0.87276455172875
Merged-chr15-89174056-4	chr15	89173548	89174548	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-97.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	6.3302599971083	6.30165123527303	6.77935453810465	6.55119097920068	6.76766496527662	6.24534713892949	0.114515834485988	0.712385019268715	0.925048627306913
Merged-chr6-124812448-2	chr6	124811948	124812948	+	930.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_009415, exon 4 of 7)	exon (NM_009415, exon 4 of 7)	1848.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	2.98053402827832	3.06422449178141	3.48886630482152	3.0709906831727	3.00196435364115	3.35676931592839	-0.181421829776442	0.793466153329609	0.950432322089225
Merged-chr6-88043609-2	chr6	88043109	88044109	+	812.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	1408.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.41079673462041	4.8403068379854	4.58495441717008	4.88966582191953	5.02486429434805	4.96266966692003	0.7521522732529	0.0699035694159505	0.346160578703946
Merged-chr6-51551665-6	chr6	51551092	51552092	+	943.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361577, intron 1 of 6)	MTC|LTR|ERVL-MaLR	6299.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	6.86149765606177	6.60071265824042	6.80167007740972	6.9365720967767	6.91691003626717	6.75230970547279	0.184865519125515	0.471159042607645	0.819888573544447
Merged-chr2-165936151-2	chr2	165935651	165936651	+	713.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51313.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.55264506122101	3.31927181824106	3.55488516893295	3.09562458644207	2.98693429325636	2.99674853901571	-1.97157829993084	0.00352069771769259	0.0473646266279329
Merged-chr16-20361903-4	chr16	20361400	20362400	+	967.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013790, intron 24 of 29)	RLTR9E|LTR|ERVK	-36496.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	5.69274729068597	5.77615164040905	5.98264158070093	5.8688717948799	6.09220003677848	5.66762034636846	0.154230829447674	0.632141942439336	0.895435008062156
Merged-chr10-43477629-2	chr10	43477129	43478129	+	687.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1511.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	3.69644990529645	3.39352215469682	3.40763756979976	3.3451471834744	3.49520881106018	3.42246783573371	-0.318585839591866	0.594965053091524	0.87924603206665
Merged-chr6-31216749-4	chr6	31216254	31217254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110469, intron 1 of 3)	CpG	1720.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	8.95293806179348	8.65327266790721	8.24958185440657	8.50485015416891	8.45804882959825	8.24513918592437	-0.342535073578386	0.181465473001983	0.563787133106409
Merged-chr15-58822526-1	chr15	58822026	58823026	+	679.5	f0_balb.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	901.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.04535305780806	7.33314579946843	6.76292462212169	7.10052518006211	7.2609485398208	6.96021984904385	0.0605584895160697	0.826251404850379	0.959130347937145
Merged-chr10-44997746-2	chr10	44997246	44998246	+	582.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69468.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.99534647533926	3.85456658626256	3.81942740314048	3.86147331365585	3.86091363501484	3.78447281060999	-0.17809288346646	0.728989344674141	0.93049050287082
Merged-chr7-90035642-2	chr7	90035142	90036142	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_110365, intron 1 of 5)	B3|SINE|B2	6483.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	5.93322700280294	6.13799138200086	6.12111561562398	6.00874610295763	6.09080038402266	6.32021747596973	0.125789383305802	0.670056748116614	0.909877715716983
Merged-chr5-64327395-3	chr5	64326871	64327871	+	631.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	97014.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.24188134982995	4.63839539774442	4.48039469504905	3.65067227416308	3.84268389354566	4.21084132264656	-1.56820090992419	0.00324061067068843	0.0446875592785288
Merged-chr10-93261786-2	chr10	93261293	93262293	+	821.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49366.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	6.30454992850066	6.03297598201709	6.47350877329349	6.11675593092258	6.14434574259061	6.06497597014597	-0.272389392464406	0.358249324538491	0.744602774931622
Merged-chr6-113658097-2	chr6	113657597	113658597	+	557.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	19630.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	4.47660423959066	4.34747395923429	4.62310765045676	4.69966772901991	4.38996566585934	4.93805712662473	0.491148382694718	0.274547581217533	0.67187891938321
Merged-chr8-84910968-2	chr8	84910468	84911468	+	936.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019945)	TTS (NM_019945)	2344.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	3.55553963556371	3.31408742892996	3.53901153146013	3.51172643865554	3.40767402664152	3.20731927062089	-0.322794164763644	0.598824131445085	0.880844238576651
Merged-chr1-134091239-2	chr1	134090739	134091739	+	969.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12084.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.47390665271893	3.11036723921444	3.6142147961776	3.45795473455557	3.30930216002652	3.73195062333118	0.344311565434211	0.592274370195025	0.878003422897225
Merged-chr17-33997720-2	chr17	33997154	33998154	+	780.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	2679.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	3.35432578059454	3.27214902837248	3.46178786900702	3.66276846812087	3.79461775540859	3.64208019283156	1.27447827281806	0.0271585762153342	0.196308064865786
Merged-chr9-116139732-4	chr9	116139229	116140229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	35634.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	7.32383172574693	7.52772573943557	6.98530635709489	7.18090926579344	7.35160518050894	6.98588597760264	-0.176405518755065	0.516158357805877	0.844051513295388
Merged-chr3-60618002-3	chr3	60617474	60618474	+	761.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 6 of 7)	MIRb|SINE|MIR	116795.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	3.14356324172541	2.90095785783859	3.33209975073952	3.19647280519971	2.99883560590745	3.34965974875324	0.221966212292593	0.745017306315904	0.936032341688524
Merged-chr2-174344856-1	chr2	174344356	174345356	+	656.0	f0_balb.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14767.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	6.20643421015938	6.09929095254524	6.10356230835993	5.76363894444875	6.06207206435239	6.14272504220327	-0.242833656509718	0.416842816621458	0.787693011303642
Merged-chr14-51941933-3	chr14	51941455	51942455	+	756.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-19182.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	7.34611479059226	7.54515461736041	7.35032775932341	6.82438806796867	6.76017000169951	6.66655665329017	-1.00648930872914	3.55230833352629e-05	0.00118590354773796
Merged-chr12-3763306-4	chr12	3762810	3763810	+	819.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-43670.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.8423440080025	3.12886871436989	3.09071041734307	3.12431891826039	3.08182070540295	3.10438867663957	0.344337049169415	0.608598502498988	0.885006356798728
Merged-chr1-34511206-4	chr1	34510705	34511705	+	929.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12793.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	3.18079689722877	3.06974535746619	3.22320955827441	2.97183948176811	2.95487110560323	3.12539248938747	-0.641662933089005	0.330370327921619	0.721867972104254
Merged-chr11-109651020-4	chr11	109650559	109651559	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021880, exon 1 of 11)	5' UTR (NM_021880, exon 1 of 11)	138.0	NM_001313976	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	7.841591512586	7.54775725189073	7.67821230315772	7.83946776944859	7.26658528756599	7.83580483972558	-0.0374607855409616	0.889213718081082	0.974207858658472
Merged-chr11-80157883-2	chr11	80157383	80158383	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	3721.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	5.55372425942985	5.67357941564725	5.83180443338708	6.09263866800528	5.92310419982572	5.84389928123375	0.496223687013258	0.110232917921929	0.44355436116098
Merged-chr14-19985868-2	chr14	19985368	19986368	+	956.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8619.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	7.09856642359065	7.34261402446506	6.98101119037925	7.12599996445849	7.25966410933197	7.24382782256844	0.0807419014946495	0.744858488543657	0.936032341688524
Merged-chr16-58502732-1	chr16	58502232	58503232	+	572.5	f0_c57.idr	intron (NM_001357433, intron 2 of 10)	B1F|SINE|Alu	20694.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	7.17851513684571	6.52713157978305	6.9485785583445	7.00667648441304	7.21452969922293	7.19754823725196	0.34919952581673	0.223217708217767	0.618065923442945
Merged-chr15-96707874-2	chr15	96707374	96708374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8146.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.29697601436833	2.23041379635578	2.56310692939302	2.48522645664988	2.3603762348696	2.63669887493669	0.804179569618034	0.342181214312685	1
Merged-chr1-183657297-4	chr1	183656778	183657778	+	855.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-91699.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.39998743237631	3.22495511994602	3.32420711990237	3.67925967700545	3.79384293722897	3.62399005951548	1.43732463291049	0.0145556247436353	0.129945326264856
Merged-chr10-99169982-4	chr10	99169486	99170486	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61851.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	7.85755295880673	7.84897107774692	7.36645648781163	7.55539864697494	7.82301533684001	7.51120597950695	-0.109985185095467	0.67117380655095	0.910331715711864
Merged-chr13-42258656-4	chr13	42258164	42259164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42812.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	6.62913753503341	6.63596543526289	6.42021138234276	6.53912948285876	6.55489181282037	6.34243342394757	-0.133344721084408	0.619772863833811	0.889921490515518
Merged-chr6-28319813-4	chr6	28319304	28320304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58203.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	3.64091778748959	3.62812566235475	3.7775828075821	3.57983125688178	3.54663794144226	4.23987344277664	0.449685484725476	0.451333700124121	0.808957790071745
Merged-chr19-11970552-3	chr19	11970055	11971055	+	912.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	4711.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	4.34470930021743	4.34234169043452	4.42055020182054	4.59987253451156	4.50879738752771	4.52984663743744	0.456829308096176	0.28426054738639	0.681994389352597
Merged-chr13-24811961-2	chr13	24811461	24812461	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024473, intron 4 of 4)	B2_Mm2|SINE|B2	10304.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	3.68065936084236	3.94956149988465	4.09594730353372	4.04074111128425	3.77019882459747	4.33135679268777	0.426734431355969	0.435115169201006	0.798787931580304
Merged-chr7-6152950-4	chr7	6152462	6153462	+	806.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3009.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	5.42348568965039	5.32214118464823	5.71449453518911	5.31957094805625	5.26505276401322	5.57308102588241	-0.2006737269564	0.569492315307892	0.8688875602138
Merged-chr10-41476424-4	chr10	41475915	41476915	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001164433, exon 1 of 23)	5' UTR (NM_001164433, exon 1 of 23)	101.0	NM_138315	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	5.77835333739153	5.78870718107468	5.59540877240948	5.40436533725006	5.58254607184718	5.78896195753449	-0.251345242194538	0.442333411870156	0.803209439640776
Merged-chr3-36064729-4	chr3	36064216	36065216	+	984.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-1263.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	4.06021186240087	3.9596577605354	3.79830534909309	3.92436329072997	4.14259577929937	4.50034005304035	0.726808378619688	0.166610170383022	0.542043333270612
Merged-chr14-63130828-4	chr14	63130317	63131317	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8355.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	8.59422590036309	8.87577560279342	8.28413437022895	8.47342579528855	8.78642589248939	8.35219845352824	-0.0796428369435685	0.755612953849025	0.939385068935749
Merged-chr3-136703076-4	chr3	136702577	136703577	+	964.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	33011.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.67700201188533	4.4768456197598	4.63309839652128	4.6574088655357	4.64066431144753	4.48998191894255	0.0176152985295079	0.966361383734419	0.992302763946523
Merged-chr3-121292057-4	chr3	121291544	121292544	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	CpG	304.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	7.66145062454441	7.83330012962942	7.52416215635507	8.00268975365419	8.27325618288868	7.73629857228516	0.495937438483912	0.0490814408961731	0.281536504487024
Merged-chr2-143975452-4	chr2	143974978	143975978	+	964.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	35785.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	4.29282182464096	4.14744779289943	4.42346957120314	4.30136972708679	4.27070095284264	4.56726199351651	0.245913346226809	0.59269830018569	0.878171622747037
Merged-chr6-72037742-4	chr6	72037212	72038212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	4816.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	6.08540219593013	5.8440371552764	5.96428987716597	5.70430182877045	5.5409506671543	5.7052188236799	-0.58000744688126	0.0614249646184147	0.321429372741906
Merged-chr2-150845871-3	chr2	150845342	150846342	+	847.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-3272.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	5.94972363381678	6.32081565818845	6.26323790893422	5.90047384041453	5.90153883216596	6.05515505383839	-0.407670603246752	0.177451386533213	0.558416010443312
Merged-chr6-131290630-4	chr6	131290133	131291133	+	888.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025564, intron 1 of 4)	B2_Mm2|SINE|B2	2611.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	3.39246843207639	3.45837520206905	3.54132528644049	3.63108360889155	3.83583058318251	3.95988423340346	1.22269154008485	0.0302303818807522	0.209972974744587
Merged-chr11-100369173-3	chr11	100368662	100369662	+	875.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13021.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	5.52638651902522	5.10749259446589	5.29908440253392	4.88691755529023	5.22215174561077	5.17032495309888	-0.446298434070448	0.240328649952246	0.637403700800896
Merged-chr7-16326400-4	chr7	16325901	16326901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_019748)	TTS (NM_019748)	16818.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	3.92412688483564	3.80397538975514	4.04632632008431	4.31193035663231	4.24756049094469	3.91324013766851	0.743489644098	0.141427801433864	0.502183459290427
Merged-chr4-151996622-1	chr4	151996122	151997122	+	1000.0	f0_c57.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-443.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	7.96973746292904	7.66162552633297	7.69217063591249	7.96316128283326	7.8157646797624	7.65607504158593	0.0517723932134592	0.82656482160963	0.959139811418046
Merged-chr6-148561282-4	chr6	148560777	148561777	+	997.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53032.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	3.81412161819926	3.85934399008355	3.87512492178811	3.75833838552183	3.96945775253764	3.94396004431915	0.14741330491899	0.773659655063371	0.944173194563192
Merged-chr15-97517423-2	chr15	97516923	97517923	+	859.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	188399.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	6.23615552452724	6.53872557822752	6.15706260861832	5.53649919211361	5.82406762542885	5.42449691662394	-1.22830748971297	0.000205971464672762	0.00513735032409086
Merged-chr2-5697437-4	chr2	5696943	5697943	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	17319.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.59220544151036	4.85222866729189	5.05636978418119	4.476641423659	4.58571021570362	4.49426306346374	-0.744016649724948	0.0821251914470374	0.379123019025808
Merged-chr9-108349513-2	chr9	108349013	108350013	+	562.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011678, intron 1 of 21)	B1_Mus1|SINE|Alu	1682.0	NM_011678	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	2.75478679209502	2.68003091402302	3.10721592597649	2.75289632908304	2.74665859681856	2.83797259459284	-0.380693849398744	0.607755548090371	0.884709874063631
Merged-chr14-40950475-2	chr14	40949975	40950975	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-2266.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	5.11657432734156	5.29035170333482	5.49888060047479	5.04815352272209	5.04462062233801	5.27551460528319	-0.374512102484735	0.307334483958292	0.703468906648251
Merged-chr10-125371623-4	chr10	125371109	125372109	+	917.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42646.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.81460733583458	6.22081832190832	5.94701445157736	5.58189474065922	5.83747519137093	5.78793877178057	-0.473658909833453	0.141192811333609	0.501979601184758
Merged-chr7-19265025-2	chr7	19264525	19265525	+	797.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009499, intron 1 of 12)	ZP3AR|Satellite|Satellite	6829.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	3.85367596129115	3.37592460886076	3.81068195565098	3.80556688990471	3.9141864035487	3.92903616026854	0.606841044524555	0.286101559731512	0.683448354278541
Merged-chr12-36032641-3	chr12	36032167	36033167	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	9811.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	5.77706812756904	5.75692765646871	5.5702690950294	4.49073240491284	4.25006761972014	4.3891655902934	-3.00633745576618	2.56020013089669e-13	5.4344166451952e-11
Merged-chr15-103250319-4	chr15	103249808	103250808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302338, intron 2 of 2)	intron (NM_001302338, intron 2 of 2)	1368.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	4.4904151122597	4.02206393544653	4.00688751438509	4.4366084193834	4.47178942902987	4.23096591197525	0.493584094318171	0.321075112187615	0.714713352205534
Merged-chr1-180768590-4	chr1	180768095	180769095	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42552.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.5486304217453	6.77703437847526	6.26992931266704	6.67882324792608	6.60759238521651	6.37215689314916	0.0082751582893378	0.97729571135469	0.994771164142869
Merged-chr13-62015927-3	chr13	62015406	62016406	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-113984.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	2.09344686403676	2.07918100059976	2.19290023876462	2.59883945445821	2.77118581540785	2.67573178400148	6.15935201346865	5.58808550457751e-06	1
Merged-chr4-116150445-6	chr4	116149952	116150952	+	999.9722289999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290658)	promoter-TSS (NM_001290658)	-66.0	NM_029786	68273.0	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	5.77036679069833	6.37387398052797	6.45742632929742	5.76901169458094	5.90570108533531	5.94639712211828	-0.611570250549124	0.0705280674897254	0.348051683748595
Merged-chr13-98890484-4	chr13	98889960	98890960	+	835.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178716, intron 2 of 23)	intron (NM_178716, intron 2 of 23)	582.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	7.11248935668062	7.25634802536235	6.79919038690135	6.98667002829877	6.5398482655234	6.60783982271446	-0.539269261703684	0.058913732032157	0.314201316162123
Merged-chr8-111526785-4	chr8	111526272	111527272	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4665.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	3.81075656373705	3.85294494034647	3.62594229803021	4.51994573067978	4.57002815628543	4.14901960624819	1.90430968840034	0.000309008045404027	0.0071454443173553
Merged-chr4-134853409-4	chr4	134852884	134853884	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-39.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	8.44087350584381	8.66956150609384	8.12931404362319	8.31871117853643	8.5068593727322	8.08326567347073	-0.164482292050294	0.512079000653073	0.841669751538036
Merged-chr5-130144747-4	chr5	130144219	130145219	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172509)	promoter-TSS (NM_172509)	-169.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	6.71689953931123	6.83763988793665	6.70695040521766	6.87471406183696	6.92632950366544	6.76565348372857	0.16215330230415	0.515841129200074	0.843966720312586
Merged-chr10-18999567-2	chr10	18999067	19000067	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	12396.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.50746482242984	2.56362825209479	2.65981095348646	2.38308505124108	2.48400509137881	2.67223264938112	-0.360458661963828	0.649612215361397	1
Merged-chr1-66701288-2	chr1	66700788	66701788	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025683, intron 1 of 5)	CpG	457.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	6.33833299363006	6.84830483346605	6.61173927419422	6.70588274889949	6.53939303243016	6.33955899800878	-0.122924516345523	0.677560176327404	0.913010966021872
Merged-chr16-3745396-2	chr16	3744896	3745896	+	987.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	1297.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	6.45681873596423	6.56710122625448	6.29700130730039	6.43082450121813	6.4364265352221	6.27491569198043	-0.105348150740055	0.700380453133243	0.920919335036368
Merged-chr14-55746641-5	chr14	55746141	55747141	+	857.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026819)	promoter-TSS (NM_026819)	948.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	5.47603933606484	5.47140434840519	5.73919711763244	5.41034184067659	5.68631557846035	5.70025638470374	0.0887653605071084	0.790489180683196	0.949510125158813
Merged-chr8-11555974-4	chr8	11555471	11556471	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-92.0	NM_001302457	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	7.45265412970076	7.09575508091974	7.36539588871263	7.22962090118466	7.19806122570163	7.49375185970361	-0.00610496970789643	0.980731472352382	0.995560772285461
Merged-chr9-55308697-4	chr9	55308212	55309212	+	993.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18201.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	5.9330013485679	6.25717541025507	6.71442258061755	5.33562088163316	5.38512396741121	5.61663176406607	-1.57658699933287	1.06415933081009e-05	0.000422858498558002
Merged-chr2-52875917-2	chr2	52875417	52876417	+	851.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MIRb|SINE|MIR	18049.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.40774681929532	5.58883452399622	4.9654006069391	5.07428917290467	5.52943259097757	4.73182011411487	-0.367074689870597	0.411218216870123	0.783877099438722
Merged-chr13-52618758-4	chr13	52618262	52619262	+	844.150024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	21880.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.51518485263676	5.28018940445597	5.52904646083614	5.12664895928326	5.18920880188018	5.26853350538531	-0.495316124099452	0.154682966279857	0.52390421792532
Merged-chr5-135185239-2	chr5	135184739	135185739	+	845.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2084.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	5.31010022189259	5.52334312748272	6.0596841483986	5.80451021347403	5.7779117097723	5.73477229317252	0.213632933586546	0.554519912741412	0.862826181827127
Merged-chr11-22666153-4	chr11	22665622	22666622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	153839.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.79023349802645	4.46565994125406	4.27084675293534	4.47082145564489	4.5940008851961	4.48004789554101	-0.0439925772096839	0.922598566889739	0.982621045978137
Merged-chr17-26437510-5	chr17	26436970	26437970	+	951.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	22505.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	5.67813259482549	5.90442210920141	5.8557262742488	6.80915132602005	7.21228413157458	6.93798395705489	1.93783765152079	1.89275431551924e-11	2.9165240941801e-09
Merged-chr16-38461877-2	chr16	38461377	38462377	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359898, intron 1 of 5)	L1MC1|LINE|L1	2944.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	3.21668643690365	2.97905227773942	2.75975472515497	3.00907884760047	2.81357580136571	3.02646412294001	-0.246707161540231	0.736142955527783	0.933046642264646
Merged-chr17-84790824-4	chr17	84790284	84791284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	2.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	8.12405252514908	8.35816094114336	7.75248635191107	8.10642946933882	8.14664931054571	7.72554317584496	-0.137360027388383	0.603704121931747	0.882783590954895
Merged-chr8-79391656-1	chr8	79391156	79392156	+	724.0	f0_balb.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	7812.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.02239258282431	4.31554098901725	4.09272788471267	3.87402858203474	4.02723297946979	3.9137938502856	-0.612207237004916	0.221851123760035	0.61671749095216
Merged-chr4-32587768-1	chr4	32587268	32588268	+	1000.0	f1_balb.idr	Intergenic	Intergenic	14614.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	3.47272683209849	3.65478996867195	3.72313826161643	3.30085533552386	3.23321519986129	3.79165886564067	-0.580791403233639	0.354346924378491	0.74154840065609
Merged-chr1-165773299-2	chr1	165772799	165773799	+	839.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_149310, intron 4 of 4)	intron (NR_149310, intron 4 of 4)	9541.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	2.78461025996832	2.80916341500921	2.89933752559887	2.86936102645535	2.69381115747913	3.35358811277153	0.780825336826865	0.301243414898204	0.697953538576553
Merged-chr7-30219601-5	chr7	30219349	30220349	+	799.771423	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11542.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	4.05753065703665	4.25279953437763	4.06394893117742	4.78957144618029	4.71459076210309	4.82749388946202	1.63242464448813	0.00028408158906054	0.00665667723529974
Merged-chr2-160084934-4	chr2	160084447	160085447	+	956.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	68294.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	6.20343957814487	6.18519471861694	5.98728170707518	5.55553553368112	5.31137469580058	5.88573510477894	-0.976170808520328	0.00325482921231878	0.0447871389281661
Merged-chr11-75460188-4	chr11	75459672	75460672	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1367.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	8.66080550179534	8.74908754801838	8.49654270186341	8.53918703654587	9.0387030920836	8.38348334636668	0.0714490962909214	0.779171116125478	0.945710994231145
Merged-chr12-102283100-4	chr12	102282529	102283529	+	997.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161365)	promoter-TSS (NM_001161365)	-45.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	6.95441964044835	7.20442705881628	7.2147239561183	6.8139694569205	6.79103694014636	6.82826867670028	-0.486030183497482	0.0501897494702904	0.285159854855906
Merged-chr15-67039615-4	chr15	67039159	67040159	+	974.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70018.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	6.03852323195009	6.60446455782105	5.86598196225594	5.74664016534928	5.34118256740566	5.1372113989826	-1.38765336696753	0.000357051633686358	0.00802879827079356
Merged-chr9-94671649-2	chr9	94671149	94672149	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	1757.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	5.1566369271409	5.54078519910321	5.40185188136197	4.87342898300894	5.15974979440482	5.25354975577985	-0.554496537104242	0.13991350224282	0.499868788359785
Merged-chr6-8505066-4	chr6	8504561	8505561	+	996.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	4100.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	3.63938625546737	3.57510725472707	3.46374775828007	3.90279291480373	3.69035428756269	3.859274566192	0.844531356305222	0.12693299321178	0.476187578862301
Merged-chr17-65853874-4	chr17	65853384	65854384	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198949, intron 7 of 9)	intron (NM_001198949, intron 7 of 9)	31039.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	5.46767961009589	5.76009566876067	5.66952244321374	5.6226659878915	5.51761782744694	5.5091297174631	-0.162509811390481	0.618649529697789	0.889497316944952
Merged-chr6-91717083-2	chr6	91716583	91717583	+	627.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	MIR3|SINE|MIR	33016.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.46266008524288	6.62057154671475	6.46220308545662	6.46710649947817	6.60703547269192	6.05681194385498	-0.172592702739347	0.55923616088255	0.864901733108576
Merged-chr7-43466548-4	chr7	43466068	43467068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001290316, exon 5 of 10)	exon (NM_001290316, exon 5 of 10)	3335.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	6.28747114519481	6.62964205349859	6.24301490150663	6.38445105306591	6.56407792575292	6.17308561500126	-0.0195928762628104	0.947737250855178	0.988008807662239
Merged-chr10-37136556-2	chr10	37136056	37137056	+	983.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2370.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.11290815739892	5.753953284171	6.31138836021497	6.03295770950562	5.44585042676052	5.68811476736615	-0.580437819646702	0.103601085835813	0.429155132684139
Merged-chr19-29442638-4	chr19	29442133	29443133	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	31714.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	4.67505768919656	4.58198975276591	4.67467396381285	4.77105789101362	4.95346626377649	5.09733537439866	0.684024130544777	0.0858380324887826	0.388005813088148
Merged-chr6-42265619-4	chr6	42265108	42266108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	623.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	7.02443055651096	7.24218507510876	6.92716381908546	7.09251736825433	7.51802198210886	7.06939728140281	0.265425036377138	0.326740163932859	0.71908990943593
Merged-chr8-70477526-1	chr8	70477026	70478026	+	1000.0	f1_c57bl6.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-583.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	3.64827353528211	3.16026506008658	3.94681625784987	3.51618654654008	3.27524067592782	3.30830316817042	-0.900314945658212	0.17908969609379	0.560488036731187
Merged-chr11-34052513-3	chr11	34052095	34053095	+	701.714294	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 2 of 20)	intron (NM_010696, intron 2 of 20)	5667.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	5.59926050224447	5.54357959025228	5.79950246421157	5.91004850547473	5.84327812780612	6.12742194090544	0.565668001415722	0.0719549484469121	0.35227273184106
Merged-chr12-112631658-4	chr12	112631131	112632131	+	957.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11584.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	6.13199288038476	5.86299141992296	6.41746139075899	6.09446352579232	6.21883396285586	6.08707891432944	-0.0111863936727453	0.971272420071867	0.993727127580947
Merged-chr7-6169654-4	chr7	6169181	6170181	+	999.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER91A|DNA|hAT-Tip100	-2832.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	5.66782442820489	5.72780227774137	5.88204086384383	5.91144752203431	6.04698836015651	6.01227064061635	0.422596877465587	0.15969381804643	0.532004565321231
Merged-chr18-4338280-2	chr18	4337780	4338780	+	635.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 5 of 7)	PB1D10|SINE|Alu	14673.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.4854857170128	5.64776361423768	6.19864864448274	5.78314321766301	5.9743469914907	5.46732188738346	-0.063650508566116	0.865364906047475	0.968641478520565
Merged-chr17-46545932-2	chr17	46545432	46546432	+	986.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020493)	TTS (NM_020493)	456.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	5.21517395969937	5.07893842339597	4.55782873036522	4.77175742491122	4.97926624685255	4.71668725142092	-0.344813614043509	0.424538764344229	0.792697196836987
Merged-chr16-21692956-4	chr16	21692434	21693434	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	RSINE1|SINE|B4	1731.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	7.50402086816623	7.9475430349471	7.44500542991399	7.62406081342491	7.83274980849526	7.25837104632184	-0.08178181577718	0.770743158614491	0.94345245755247
Merged-chr16-36602857-3	chr16	36602359	36603359	+	742.75	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40725.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	2.86563067921707	2.79245923163874	2.98057114854225	3.22752414806651	3.08025884819704	3.05395868369118	1.16602527359618	0.0883044846779346	0.39441942997915
Merged-chr7-126703653-3	chr7	126703189	126704189	+	752.416687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009898, intron 1 of 10)	intron (NM_009898, intron 1 of 10)	531.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.57039520944132	4.8980787644441	5.15991712648693	5.02797476232546	5.00233606448224	5.06253643443763	0.309847986362192	0.444321504010885	0.804151037842623
Merged-chr1-154090026-3	chr1	154089528	154090528	+	804.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER20|DNA|hAT-Charlie	-111159.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.13909983318945	4.34850433445205	4.56366254953326	4.22235666300103	4.15153575977172	4.43302548919065	-0.232389104053056	0.622620559390282	0.891225289534451
Merged-chr14-30615354-2	chr14	30614854	30615854	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-5044.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	4.44937018536338	4.1882250695558	4.55207788889197	4.4814544629304	4.60580821140844	4.90785571833402	0.669029490986689	0.136903647297607	0.494310206464419
Merged-chr15-83040250-7	chr15	83039761	83040761	+	981.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6864.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	3.919417578617	3.74592170363429	3.86097833553312	4.36184022645937	3.86652849912028	4.21908280526695	0.941156745630774	0.0730259287056965	0.355092419106101
Merged-chr15-58343346-3	chr15	58342842	58343842	+	890.022217	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19173.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	5.68339626684631	5.67841742881634	5.65056995985512	6.09526726058683	6.29441796917413	5.8993109059741	0.786880688885517	0.0106608314415041	0.105140033493501
Merged-chr17-35873880-4	chr17	35873263	35874263	+	888.583374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175242, exon 2 of 3)	exon (NM_175242, exon 2 of 3)	-6015.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	3.82307579186402	3.491046469509	4.17233084219089	3.62007031826015	3.49747703202667	3.79523125396169	-0.697606239266731	0.241438613535313	0.638454972193678
Merged-chr2-113820269-4	chr2	113819799	113820799	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	8792.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	5.49425152018161	5.57208999551827	4.97338700280226	5.46406904148043	5.32853298063714	4.95990242365262	-0.213460655996863	0.593805819023181	0.878636435049702
Merged-chr11-69063011-4	chr11	69062399	69063399	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3124.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	6.91143961227203	6.80560470762175	6.84563432091446	7.0509238117277	7.44489938051827	7.22159765998861	0.606802401225536	0.0167372783984496	0.143526243278697
Merged-chr11-98953487-2	chr11	98952987	98953987	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6984.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	5.14239113927761	4.73479119387658	5.39750604289321	5.34613376855718	5.11980110545291	5.28439148640836	0.290672931951749	0.465586359063991	0.817137940624269
Merged-chr9-77961547-4	chr9	77961099	77962099	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	44234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.19112447711377	6.43167116502382	6.53106239048977	6.11436276154653	6.13401875627146	6.32420348786468	-0.330405224697623	0.249768222494283	0.646852801975018
Merged-chr13-42829719-4	chr13	42829215	42830215	+	770.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-36532.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	7.77538628738515	7.96804285644695	7.43921860038142	7.47040298568992	7.87227037616846	7.36096284770638	-0.225512743187247	0.411327122866065	0.783877099438722
Merged-chr12-21288741-1	chr12	21288241	21289241	+	582.0	f1_c57bl6.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	2444.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	2.80010202481155	2.78333062005687	2.92081841981633	2.63383111278358	2.70017286055925	2.87605460977575	-0.504730974310646	0.488792157396167	0.829423271678195
Merged-chr16-25024819-4	chr16	25024311	25025311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34828.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.89392169774681	6.81400729802439	6.80170321927234	6.92208495535175	6.95878317878817	6.94713580717535	0.1606598869151	0.506517241917077	0.838470324751826
Merged-chr17-81572984-3	chr17	81572487	81573487	+	948.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 2 of 8)	RMER19B2|LTR|ERVK	165400.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.42077388424394	4.42801109587667	4.38589624891071	3.77129351537432	3.81787684097284	4.45237108723954	-1.02812563178913	0.0536488468014092	0.296947598260604
Merged-chr2-166261989-4	chr2	166261460	166262460	+	941.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11948.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	4.49380215413487	3.76144034970259	4.11326140796812	3.76296847307885	3.72470661810876	3.78196021885826	-1.23020689400925	0.0287961597236126	0.203505253803496
Merged-chr14-10139535-4	chr14	10139066	10140066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	255471.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.17340529675117	5.31650375716894	5.20857028964897	4.9459474728305	5.19838922738088	5.75745208810834	0.199154846417366	0.621749016507183	0.8908398051148
Merged-chr6-70881120-4	chr6	70880633	70881633	+	928.6458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010121, intron 4 of 16)	intron (NM_010121, intron 4 of 16)	36618.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	2.37668075501866	2.14032020175044	2.44216708453615	2.05550419447191	2.13667683062662	2.19626053183516	-1.39859655035191	0.129179857826668	1
Merged-chr4-6452633-4	chr4	6452124	6453124	+	877.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1647.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	7.35463021786615	7.76464568217202	7.39999713856505	7.54698843489447	7.99701252489208	7.51037598333574	0.272924423347169	0.314065782789981	0.708455164540049
Merged-chr1-153492730-3	chr1	153492250	153493250	+	607.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5090.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	5.74034940316942	5.96402220155886	6.02588761063561	5.85391322056003	5.74978460466706	5.75275475964823	-0.221538773589865	0.471150595021435	0.819888573544447
Merged-chr4-105159025-2	chr4	105158525	105159525	+	860.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	1678.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.70976673449608	4.61116371227132	4.16280934024313	4.8158731303736	4.44805472851488	4.28698855213475	0.0375533255735895	0.938732865243276	0.986515091506254
Merged-chr12-44176553-3	chr12	44176067	44177067	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33501.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	3.05633086541245	3.40102315171951	3.16370102627395	3.65780293248955	3.86645105842626	3.70142615223856	1.99543546605021	0.00218129401697983	0.0329913770884609
Merged-chr16-16870781-4	chr16	16870251	16871251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011624)	promoter-TSS (NM_011624)	15.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	7.15404983473545	6.96104529814518	7.08562031950019	7.11535742936792	7.14304311351386	7.13074984110474	0.0933701600396962	0.69400892347449	0.919141313420726
Merged-chr10-127165143-4	chr10	127164634	127165634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-22.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	3.64995062475987	3.55661105116159	3.61454502701908	3.65387899787912	3.23496454234987	3.40903799374407	-0.603549876470965	0.314234509091547	0.708643657546399
Merged-chr9-94708468-4	chr9	94707968	94708968	+	988.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	38576.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	3.9101027690671	3.52158234816391	3.63139732484937	3.57420855603654	3.37314493612004	3.64908703345311	-0.596460225564453	0.307677838478386	0.703803552912064
Merged-chr8-70131698-4	chr8	70131180	70132180	+	943.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011266, exon 9 of 9)	3' UTR (NM_011266, exon 9 of 9)	353.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	6.62604296529167	6.38356873415423	6.58425361086296	7.02365603865709	6.62444126096631	6.72535965254756	0.424278747260345	0.12510707667065	0.473306794380806
Merged-chr12-28676207-4	chr12	28675754	28676754	+	693.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134052, intron 1 of 3)	intron (NM_134052, intron 1 of 3)	1047.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	4.98910347199475	5.12820139757613	4.86914776053363	5.47788725263536	5.53967100803692	5.12779393803216	0.806181765150988	0.030629245309046	0.211624864541651
Merged-chr16-55837984-2	chr16	55837484	55838484	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159395, intron 1 of 12)	B1_Mus2|SINE|Alu	657.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.10323000390473	6.29577430509816	6.02632099223175	6.08765655284277	6.2470284889879	5.75434170502243	-0.156193933934615	0.618136859049541	0.889154219224894
Merged-chr17-64621879-2	chr17	64621379	64622379	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	Tigger10|DNA|TcMar-Tigger	20230.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	7.28514484327674	7.41357717699252	7.25735282777565	7.22752374132546	7.62459836705226	7.25555326559137	0.101603814976329	0.685842770898068	0.916513109576437
Merged-chr5-135773272-3	chr5	135772765	135773765	+	794.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5036.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	4.67639945315009	5.03569197014257	4.85683024902183	5.27110881276345	5.18906182793232	5.1390527674514	0.71044287549838	0.062359151064032	0.324521873896803
Merged-chr5-30073549-3	chr5	30073043	30074043	+	926.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033402)	promoter-TSS (NR_033402)	82.0	NR_033402	22171.0	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	4.11749177805921	4.20053186650428	4.34398541096609	3.91054308102842	4.21322195245589	4.14757946624687	-0.330567953142054	0.495785665824063	0.83269415207074
Merged-chr6-31221720-4	chr6	31221227	31222227	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	1376.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	6.05932141059456	5.89722948141446	5.4958757691963	5.49427662817425	5.54401239724799	5.29750781662538	-0.723939258833182	0.0376991496516936	0.240115649434945
Merged-chr6-83326138-4	chr6	83325701	83326701	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_145571, exon 1 of 6)	5' UTR (NM_145571, exon 1 of 6)	162.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	6.86850815395332	6.87838610422202	7.10084680559032	7.10203778187672	6.89964548483799	6.97774035663013	0.0727750576648192	0.770588661791586	0.943400249688878
Merged-chr5-36814725-4	chr5	36814226	36815226	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008550, intron 11 of 18)	intron (NM_008550, intron 11 of 18)	15923.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	3.67411200058281	3.64778715590425	3.48120744485925	3.41472782116765	3.45641154533406	3.65961506060858	-0.359264585237265	0.531270652362548	0.851539468760868
Merged-chr3-108572898-2	chr3	108572378	108573378	+	639.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_025444, intron 1 of 3)	intron (NM_025444, intron 1 of 3)	1179.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	3.43423287675307	3.55947133416692	3.27388291632337	3.03470079230367	3.27060435098251	3.16666405016741	-1.0859019698855	0.0952273718077307	0.411213822895722
Merged-chr16-14130980-3	chr16	14130468	14131468	+	906.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 16 of 26)	intron (NM_001081154, intron 16 of 26)	28306.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	4.620873186719	4.7262011670099	4.50538396730304	4.52798677493065	5.03344967119112	4.52928827218093	0.257171901341889	0.564264717532822	0.866244877704675
Merged-chr3-96229014-2	chr3	96228514	96229514	+	796.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	7942.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	3.22430147482066	3.22222569202655	3.16086525472777	3.3253208778414	3.05325541344025	3.34714280615389	0.157821198520147	0.804766770675379	0.953651704501661
Merged-chr10-80016584-4	chr10	80016064	80017064	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001142701)	promoter-TSS (NM_001142701)	-108.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	5.83592289748718	5.98460859588862	5.84102105440847	5.88068284276765	5.8576215398751	5.63472420558883	-0.15719449650844	0.608888046576282	0.885053989692691
Merged-chr11-44378730-2	chr11	44378293	44379293	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21270.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.45702763740015	5.52824228506955	5.09175958429728	5.58505401837091	5.52707667851014	5.04266180222047	0.0676522928021549	0.85980260388514	0.967435965660262
Merged-chr12-78859025-4	chr12	78858508	78859508	+	770.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	2630.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	5.1302582117466	5.79091275577944	5.38964932978908	5.48225026185492	5.66008667612878	5.45342994442304	0.124412343642545	0.739740873726357	0.934245371298156
Merged-chr18-74213962-3	chr18	74213456	74214456	+	919.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	-2256.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	5.27348088867105	5.08213053396141	5.28525146122516	5.25169738603529	5.123451911659	5.04908597181533	-0.134999912517724	0.706952469910102	0.923161381966479
Merged-chr12-25054751-3	chr12	25054229	25055229	+	929.388855	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081378, intron 31 of 31)	intron (NM_001081378, intron 31 of 31)	41363.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	2.87924858816467	2.53964386201223	2.89655415121994	3.05861792589384	3.38446161432069	3.09415120772951	2.0091153936247	0.0120581166490529	0.114653384771385
Merged-chr1-185364192-1	chr1	185363692	185364692	+	740.75	f0_balb.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	1148.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	5.93572621341851	5.99196881032223	5.45114300910703	5.79915919651643	5.53644470728387	5.63615491610954	-0.306657270086763	0.369782425293419	0.754342005045842
Merged-chr8-120103053-4	chr8	120102527	120103527	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1555.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	8.1540951642311	8.24463802091155	8.04136390183712	8.18265902482748	8.67193797997525	7.83052352395668	0.189569853345848	0.494430446206317	0.832030266713895
Merged-chr3-142618866-4	chr3	142618359	142619359	+	948.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010259, exon 11 of 11)	3' UTR (NM_010259, exon 11 of 11)	-1804.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	5.03455174773829	5.20167991420092	5.65824279664359	5.8043812993983	5.90752807315014	5.79524907753018	0.999455015164665	0.00490014500284634	0.06035098658923
Merged-chr2-116999858-4	chr2	116999348	117000348	+	712.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	99696.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.13263682231731	2.96525436873938	3.00080644268829	3.15327429467341	3.15340601004788	3.19245997208637	0.569578216690061	0.382318841392926	0.763903231068644
Merged-chr13-9255241-3	chr13	9254710	9255710	+	962.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D7|SINE|Alu	-21315.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	3.75472222437517	3.63810978864612	3.651777107591	3.90413174659774	3.95964639610467	3.77727137650318	0.66139838665353	0.210492059631565	0.602621125710907
Merged-chr4-35068337-3	chr4	35067817	35068817	+	834.311096	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-83738.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	3.17434957692293	3.34121811213567	2.81917323005424	2.93578997021643	2.77955068825589	3.20297321621868	-0.674479896092311	0.372238632502291	0.756099728816208
Merged-chr13-81230332-4	chr13	81229834	81230834	+	981.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	266260.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.33940822570103	5.16057756736003	5.47334013241382	5.17091521780319	5.28470063507003	5.45165771628345	-0.041214514579258	0.907281377508056	0.978875083701163
Merged-chr7-118486124-1	chr7	118485624	118486624	+	553.0	f1_c57bl6.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	5851.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	5.61198378718367	5.69571333519837	5.50658665530919	5.7896730486874	5.83104993406523	6.20970206728634	0.60105336269091	0.0654744341522057	0.333761974939455
Merged-chr11-34057887-2	chr11	34057387	34058387	+	800.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 3 of 20)	L1MEc|LINE|L1	10959.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	6.58567020223234	6.69292334115358	6.84886653619774	6.54680062707588	7.01710793386821	6.7900427220095	0.153322633650376	0.58055013662413	0.872884157869997
Merged-chr19-5952184-4	chr19	5951685	5952685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164057, intron 7 of 17)	intron (NM_001164057, intron 7 of 17)	12021.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	6.61101855839971	6.38610136808212	6.40364251831978	6.49745239414627	6.69907007303688	6.55407035631006	0.188120260579057	0.485118595106301	0.827336504644498
Merged-chr15-81102394-2	chr15	81101894	81102894	+	981.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	2653.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	6.77913986699356	6.71771876992729	6.38680817041244	6.54638825865936	6.56633041861343	6.75786633097026	-0.045020972909691	0.869656443121424	0.969866749756942
Merged-chr3-69185329-3	chr3	69184821	69185821	+	935.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37098.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	2.62206146362861	2.7940061726883	2.81456581882989	2.77557133258981	2.73413120494544	2.63669585822267	-0.135449621421893	0.854972485027524	1
Merged-chr11-86747343-2	chr11	86746843	86747843	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	10224.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.44243462731185	5.43504080968413	5.46524626687578	5.93148568485859	6.02293881940852	5.85590581725563	0.911856078045947	0.00324731618160373	0.0447429516209443
Merged-chr15-81190287-1	chr15	81189787	81190787	+	1000.0	f1_balb.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	470.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	5.65319687883393	5.55475571863436	5.25712991635514	5.80586048381649	5.67017439606394	5.32272446398243	0.214893880007723	0.545118458817202	0.858019423019685
Merged-chr13-24781299-4	chr13	24780772	24781772	+	934.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19335.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	3.3972672354471	3.45288083332003	3.68523278387678	3.70745963768983	3.49329937677514	3.54642656909281	0.267104031836016	0.643278048404251	0.89971558951827
Merged-chr8-106933342-3	chr8	106932837	106933837	+	687.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2413.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	2.6939857171208	2.41917971142351	2.74297867588303	2.55477830571535	2.31450767235805	2.69619329111644	-0.553809024756858	0.507218262836568	1
Merged-chr16-17890885-2	chr16	17890385	17891385	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001109750, intron 1 of 9)	intron (NM_001109750, intron 1 of 9)	843.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	5.22905629793178	5.5282701146149	5.34548402415315	5.38549881404015	5.28303238591667	4.95385017231679	-0.28976843407827	0.432129240036944	0.797270167804312
Merged-chr13-48516116-4	chr13	48515614	48516614	+	943.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2678.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	3.47408001325621	3.44460031657127	3.83461809145522	3.41146956357068	3.68181910478447	3.85618564143265	0.242337675824809	0.683630078546885	0.915479407206029
Merged-chr6-89362675-8	chr6	89362179	89363179	+	948.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008881)	promoter-TSS (NM_008881)	-66.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.86012688514845	4.11438188499597	4.21967138419146	4.92486442391302	3.95091918063702	4.13671512033552	-0.0691383800479603	0.907796617658843	0.979049462233659
Merged-chr5-130129578-4	chr5	130129058	130130058	+	889.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_013837, exon 4 of 6)	exon (NM_013837, exon 4 of 6)	-15330.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	3.63724250298588	3.64636475269279	3.68766988458807	3.70206656511002	3.62847389206138	3.80748570184222	0.181371702691675	0.736332845440139	0.933131662450445
Merged-chr10-128495114-2	chr10	128494614	128495614	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172259, exon 5 of 7)	exon (NM_172259, exon 5 of 7)	-1228.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	5.2240306322292	5.04402238123064	5.3369594748588	5.051285483138	5.33879142259704	5.30962087754086	0.0851184695050852	0.815028155870717	0.956370078970016
Merged-chr5-143990277-4	chr5	143989765	143990765	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177682, intron 14 of 14)	intron (NM_177682, intron 14 of 14)	24588.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	5.20296090400533	5.14810454303784	5.09003232535593	5.30901347330445	5.45103569016171	4.84597198107159	0.189406751775749	0.62462074494538	0.892121293039105
Merged-chr6-30856144-4	chr6	30855641	30856641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149738, intron 10 of 24)	ORR1B1|LTR|ERVL-MaLR	40653.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	4.69652817252247	4.37110951716979	4.65493847352237	4.71492421279199	4.96515743997966	4.76071105026589	0.577086502924509	0.169047070022887	0.545661750425338
Merged-chr19-24988405-2	chr19	24987905	24988905	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR12|LTR|ERV1	-11124.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.35061166152096	5.66838633181747	5.89710241166817	5.66435899273794	5.82473484004145	6.14629534388909	0.429974183009995	0.219898008204505	0.61423936831415
Merged-chr17-65608951-4	chr17	65608448	65609448	+	972.708374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	4607.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	4.37639350349532	4.41792344080395	4.7815843994981	4.70805523218976	4.58522272830603	4.6987753645138	0.332149694391735	0.440584622814953	0.801886710894642
Merged-chr18-62166316-2	chr18	62165816	62166816	+	729.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13665.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	2.94909841800666	2.90100029264496	2.83335117396785	3.1395312682303	2.7880144107237	3.25973309147284	0.806112140712335	0.262709232285548	0.660713340071636
Merged-chr11-97942578-4	chr11	97942091	97943091	+	973.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163608, intron 7 of 13)	intron (NM_001163608, intron 7 of 13)	43855.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	3.94765430257109	3.70995305122701	3.58835983786296	3.85591153754082	3.90951310581262	4.11630740763541	0.611252695241468	0.259259993111006	0.656829933215643
Merged-chr11-117963554-4	chr11	117963072	117964072	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	5794.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	6.52036990693918	6.1918280437503	5.93368211795686	6.13867563359136	6.02991261113997	6.04398011092447	-0.301118172755433	0.334103668895866	0.724748007849347
Merged-chr3-116808755-4	chr3	116808268	116809268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-602.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	6.72832129277849	6.90861723435453	7.05845713030519	7.02728967765332	7.04939238503221	6.95765031030791	0.177879763475598	0.477664199121782	0.823296931819647
Merged-chr12-91735796-4	chr12	91735288	91736288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50648.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	7.73711036031995	7.81962172920842	7.85143796923447	7.47996811431068	7.80653543971715	7.4917638372396	-0.277241269375585	0.235529045688977	0.631756305201629
Merged-chr9-64784966-4	chr9	64784445	64785445	+	872.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26066.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	3.45448591402525	3.11685266697921	3.07211051676245	3.22141124823703	3.05512352789017	3.20624597539149	-0.298788045886955	0.652468636886618	0.902986290245403
Merged-chr13-115150072-4	chr13	115149569	115150569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48105.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	4.73005487732934	5.10014778901596	4.9006769249849	4.66124328365669	4.48607923046747	4.85750605606933	-0.587775456980697	0.158726624760062	0.530537931856658
Merged-chr5-38219501-1	chr5	38219001	38220001	+	895.0	f1_balb.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	953.0	NM_029162	75079.0	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding	3.50592836584249	3.76429681322406	3.6702960877655	3.68581823401571	3.45565714100958	3.88757378699662	0.0932466991397619	0.871080615900825	0.970222087171093
Merged-chr1-156660822-3	chr1	156660321	156661321	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023141, intron 4 of 5)	ERVB7_1-LTR_MM|LTR|ERVK	13518.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	3.20778186471179	2.99608908589217	3.73311851061754	3.99930279571725	3.88856203915348	4.21051804042951	2.22590560179995	0.104159932627919	0.430484263353891
Merged-chr6-5363200-4	chr6	5362689	5363689	+	892.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-20197.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	5.09825623800033	5.19179296363828	5.12585767769207	5.32215944454549	5.28009577399995	5.40996980587106	0.391995203963286	0.25850050252264	0.656051662718961
Merged-chr12-34696956-4	chr12	34696431	34697431	+	992.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-168042.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.64617716060418	5.79100370860911	5.99946477328873	5.97310516909669	5.96272543092425	5.92313780701046	0.256167661854259	0.402426368233917	0.778019718782707
Merged-chr7-73595992-3	chr7	73595498	73596498	+	838.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-37603.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	7.50550994754111	7.79593201869232	7.30855827716823	7.41360859239151	7.68971985069361	7.22113449763406	-0.139528155976685	0.604375093898442	0.883066004303953
Merged-chr5-99516401-1	chr5	99515901	99516901	+	967.0	f0_balb.idr	intron (NR_030692, intron 2 of 3)	MTD|LTR|ERVL-MaLR	212659.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	2.99793607468732	2.65338918816196	3.02392388204489	2.67605647142547	2.63697937793474	2.67510439281134	-1.25659082357331	0.10118754425964	0.424204614205772
Merged-chr11-82568486-2	chr11	82567986	82568986	+	688.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-64867.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	4.59539396550039	4.74246415152096	5.09050541308209	4.7414646389984	4.80700662136551	5.02587983163556	0.0981919524515481	0.813220116190803	0.955933854959943
Merged-chr14-63193741-7	chr14	63193186	63194186	+	995.9428710000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_201610)	promoter-TSS (NM_201610)	-161.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	6.02637075110771	6.61608586225239	6.06908640965799	6.22450813281587	6.1989296956132	5.65209188372795	-0.358482353974279	0.311813729129694	0.706723622367304
Merged-chr2-31726930-4	chr2	31726432	31727432	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-33007.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.96370142122284	4.85996609325936	5.05419060337408	4.68337011234833	4.66173092152085	5.05249824257554	-0.353803041648172	0.377179668291314	0.759616521190546
Merged-chr5-76132244-4	chr5	76131753	76132753	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8020.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	3.45120516165856	3.64640832574182	3.34697314616281	3.15269954334837	3.33648410621341	3.36157867128994	-0.79890370277314	0.197370355768731	0.585357590633181
Merged-chr10-122116792-4	chr10	122116302	122117302	+	913.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2895.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	2.75969399941113	2.65389056283143	2.85414765830738	2.72356587633325	2.79434723684688	2.86707240586549	0.209292547396034	0.77190644358884	0.943666769877029
Merged-chr18-67194402-2	chr18	67193906	67194906	+	627.5	f0_balb.idr|f1_balb.idr	intron (NM_177137, intron 5 of 11)	B3A|SINE|B2	-10953.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	3.12316077597116	2.98381628489315	3.07458100847134	2.61665429080092	2.63881600059683	2.97381995307704	-1.63960530486503	0.032170298991208	0.217840676958043
Merged-chr5-136245400-4	chr5	136244898	136245898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-458.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	7.39144601895536	7.6294858481917	7.63287578664327	7.73872453786671	7.9017316155633	7.37210847107104	0.209812286680557	0.411240848204298	0.783877099438722
Merged-chr5-41707772-4	chr5	41707264	41708264	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310592)	promoter-TSS (NM_001310592)	-73.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	7.6823492729938	7.56873368388962	7.27402222217981	7.56642628111916	7.44413385129045	7.62526075262071	0.0229713707613806	0.924235816814472	0.982923745196305
Merged-chr4-45408788-4	chr4	45408282	45409282	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-16.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	8.52191460979218	8.62328009510543	8.33084998417874	8.6934188516179	8.91482747991365	8.46366481944771	0.287864785384012	0.210937257559327	0.603274466453443
Merged-chr9-35099117-4	chr9	35098547	35099547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-17681.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.54501830348301	6.71498971886157	6.47452567868175	5.55346797798335	5.61889017262643	5.97024931989434	-1.48981351711673	7.68085370749652e-07	4.30956490420344e-05
Merged-chr16-56074578-2	chr16	56074078	56075078	+	837.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	-826.0	NM_025483	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	3.15343803997639	2.89586370276847	3.19395840750643	2.98865393215283	2.97859930414718	3.09564305128609	-0.293131031271949	0.663967537001813	0.907458933714624
Merged-chr11-22782914-3	chr11	22782411	22783411	+	855.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	76824.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.00274915843034	3.96860627440754	4.13548446439935	3.7885754657708	3.83428988848843	4.11393696896919	-0.368185228361846	0.46896278149222	0.818823795567869
Merged-chr9-99139135-3	chr9	99138631	99139631	+	680.166687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1080.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.34973290302216	5.45361774825832	5.37437356776905	5.71734095327961	5.78561651052052	5.40679682197832	0.499373837078037	0.136654433102385	0.493821856578793
Merged-chr3-8691249-3	chr3	8690742	8691742	+	845.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24204.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.44819498213464	3.4753765374212	3.31558732285465	3.21385967688391	3.21609305649383	3.38713584734757	-0.594440778422649	0.329203136795914	0.721152738507735
Merged-chr10-57835635-2	chr10	57835135	57836135	+	979.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER21C|LTR|ERVL	41091.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	6.05749084964476	6.14977582421873	6.18460091415171	5.76184393414793	5.9882452812415	5.96220975082008	-0.379706987113385	0.196924587648558	0.584803931089222
Merged-chr15-39611105-4	chr15	39610603	39611603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-48408.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	5.23080040938804	4.88454768432505	4.7503481671465	5.3896667519819	4.84462889974196	4.81856349947188	0.148307601588239	0.731302899745275	0.931357644172417
Merged-chr9-65542399-4	chr9	65541878	65542878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MA4|LINE|L1	37709.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	9.08878818733741	9.17410743573969	8.60622954069654	8.8060587316137	9.28736914395849	8.40138947302883	-0.12593836630036	0.669663890655222	0.909715790834065
Merged-chr11-50244658-4	chr11	50244148	50245148	+	810.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6116.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	6.38379854541092	5.96634910056449	6.25618121102807	6.24379669259558	6.07218577401721	6.15148296694714	-0.095276172004362	0.749865892698587	0.937463855381525
Merged-chr15-25983189-2	chr15	25982689	25983689	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1177.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	2.49514659159607	2.42420692793455	2.6273015927518	2.56033873052906	2.47829887117465	2.87709116311302	0.734950380457963	0.357731985977461	1
Merged-chr12-100432092-3	chr12	100431602	100432602	+	843.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033213, intron 5 of 19)	MTD|LTR|ERVL-MaLR	88720.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	2.9261976933891	2.86719768520843	2.97619008028723	2.40536150430376	2.42808542459647	2.69032405312175	-2.60764634684598	0.00293601880803878	0.0414489740378845
Merged-chr2-132689410-4	chr2	132688914	132689914	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358261)	promoter-TSS (NM_001358261)	-743.0	NM_001358261	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	5.18826993111837	5.12166766020325	5.56942166193715	5.11450183741536	4.98920857390824	5.23838497536225	-0.380324758108315	0.311386081981289	0.706465219571547
Merged-chr11-115066949-4	chr11	115066450	115067450	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4911.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	6.57749042900165	6.14302121182268	6.59461072152047	6.80218813806978	6.89751568688073	6.60306270186723	0.526040492583921	0.0676824218424314	0.340326260373763
Merged-chr12-69145433-3	chr12	69144960	69145960	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR14|LTR|ERV1	13726.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	4.49723529497399	4.60858717724195	4.58634489103279	3.99101765123008	4.2081145094727	4.1776400788874	-1.14778844804137	0.0123826090703148	0.116791219170569
Merged-chr16-13831746-2	chr16	13831246	13832246	+	954.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346109, intron 5 of 7)	intron (NM_001346109, intron 5 of 7)	12495.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	3.86496364372029	4.04528183800732	4.13325811562924	4.28400776833998	4.41960078539822	4.24803871364026	0.873054186125804	0.0668054547925609	0.337815149339374
Merged-chr10-98831010-2	chr10	98830510	98831510	+	845.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83632.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.59626069272905	3.53549590773679	3.75444944138166	3.71695269313369	3.91090621602531	3.721284931002	0.560184554521624	0.303673452243243	0.700191732830124
Merged-chr15-36578703-4	chr15	36578213	36579213	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23140.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	3.72073911395057	3.55055338381021	3.75041604309461	3.72502201176529	4.10012140334195	3.76856235771753	0.687392773816442	0.211641456347857	0.603993331255815
Merged-chr11-74486191-2	chr11	74485691	74486691	+	592.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	103967.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	2.48132174866695	2.47630163358495	2.69476805072562	2.35343609989844	2.36836579718575	2.70851860108801	-0.411292911962787	0.617799540931303	1
Merged-chr18-23896802-4	chr18	23896314	23897314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57874.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	7.12670008556387	6.97760991779808	6.81850579953211	6.78173654378694	7.18531940080564	7.19825749958259	0.126577495609814	0.636917816629694	0.897256731014262
Merged-chr8-22962256-4	chr8	22961764	22962764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12572.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.32113931833241	3.99502905941733	4.23276462987617	4.89839013707368	4.74219806229878	4.57439105412765	1.41997187247095	0.00175206701899036	0.0278962863597684
Merged-chr2-124643669-3	chr2	124643189	124644189	+	868.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-9892.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.54785611842705	5.64828180513198	5.63029346116382	5.33293000090695	5.20857061949423	5.4112667516251	-0.574009317982837	0.0828665154670123	0.380863732820325
Merged-chr13-97137952-4	chr13	97137447	97138447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271464)	promoter-TSS (NM_001271464)	10.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	8.3938497093549	8.54943478269786	7.98987064719279	8.50717234950676	8.63533433714288	8.09175407772879	0.138333037251548	0.600891458554203	0.881855262262798
Merged-chr1-88095829-2	chr1	88095329	88096329	+	595.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_201642, exon 1 of 5)	exon (NM_201642, exon 1 of 5)	828.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	4.16440713196781	4.34880196928374	4.25831132638849	3.69615798321061	3.96420035487137	4.10094403050936	-0.964673076192451	0.0568480924493678	0.307396417762347
Merged-chr1-191317958-4	chr1	191317468	191318468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_025424, exon 1 of 4)	exon (NM_025424, exon 1 of 4)	150.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	6.34925696829897	5.97360812734472	6.08975754186058	6.35235971730928	5.94163686034489	6.06057749762983	-0.0364891963914718	0.90718482904833	0.978868492078838
Merged-chr19-40702663-4	chr19	40702129	40703129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	42859.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.7473074268527	5.53064312931255	5.53195848968434	5.70371774759815	5.56160914920543	5.44478728485905	-0.0610380431587263	0.852424284438133	0.965385693881201
Merged-chr13-33089773-2	chr13	33089273	33090273	+	949.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_173052, intron 4 of 6)	intron (NM_173052, intron 4 of 6)	5670.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	2.94866946464623	2.80915540839739	2.98123811199661	2.74048599040865	2.66884209493545	2.99569534156659	-0.557781718734312	0.443052622677996	0.803555574083237
Merged-chr2-155682131-1	chr2	155681631	155682631	+	562.0	f0_balb.idr	intron (NM_019828, intron 1 of 18)	L1MB7|LINE|L1	10253.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	2.73661892293759	2.82130258128864	3.01926794767361	2.98730746452197	2.5889047684036	2.8560424269768	-0.206311915202734	0.783886971916985	0.947360539866523
Merged-chr16-38348469-4	chr16	38347956	38348956	+	868.587524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1457.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	3.83653730779623	3.74348138762424	4.02493678874865	4.04860735365492	4.06686097412155	3.94890300082044	0.491633106068725	0.330851142458537	0.722226411767471
Merged-chr11-53875103-2	chr11	53874603	53875603	+	819.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_011396, exon 4 of 10)	exon (NM_011396, exon 4 of 10)	-15847.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	2.43451823580079	2.43348471670072	2.74050085093561	2.4976109071248	2.32733278908065	2.57332429487994	-0.435070581296534	0.595299086834511	1
Merged-chr9-101074527-4	chr9	101074035	101075035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-227.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	8.41606919326864	8.395736296844	8.25836790047781	8.40276266016603	8.19530945261926	8.55143633330554	0.0356122660785126	0.870590984251019	0.970084781962666
Merged-chr8-85554536-4	chr8	85554022	85555022	+	974.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019794, intron 1 of 8)	intron (NM_019794, intron 1 of 8)	749.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	7.90139070029141	8.3472717719217	7.89931809867133	8.20693221993593	8.16961395148254	8.06249430499354	0.107045017593842	0.655849832406974	0.904452539153745
Merged-chr7-25477688-4	chr7	25477214	25478214	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039187)	promoter-TSS (NM_001039187)	-89.0	NM_001039187	26365.0	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	4.79495013872183	4.91347311980822	5.0647526022982	4.69155129935672	4.59635284206751	4.99733148801155	-0.367546589596777	0.365971669101964	0.751042826221802
Merged-chr8-94532999-4	chr8	94532521	94533521	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153507)	promoter-TSS (NM_153507)	-7.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	4.59395037246357	4.48189926566089	4.33276152283726	4.4817740918875	4.10520847236545	4.35575948983861	-0.419813785692283	0.361231223603205	0.747169629644794
Merged-chr15-76701449-4	chr15	76700941	76701941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-101.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	6.55136807783115	7.00958977639322	6.95591457484859	6.9035909922686	7.12995533968965	6.76484625035494	0.149102491772554	0.595579804724976	0.879549293510723
Merged-chr18-57591777-4	chr18	57591284	57592284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-39387.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	4.42601179142561	4.60672062698149	4.46421054727517	4.61574119949191	4.34549382405577	4.69244889882639	0.112227954139482	0.79733595099145	0.95172471395921
Merged-chr17-24463979-4	chr17	24463492	24464492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6481.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	4.16960148997341	4.62775948649993	4.46936325540084	4.13619976703175	3.95387184047744	4.32663008088469	-0.808649675834011	0.098748916497188	0.419176606667586
Merged-chr15-76872491-2	chr15	76871951	76872951	+	675.125	f0_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1016.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	3.2130426566159	3.31427159296333	3.12000136063827	3.26641999447615	3.14760702038562	3.41822136210973	0.218695524853862	0.730158101950126	0.930759951830614
Merged-chr1-46854685-2	chr1	46854185	46855185	+	980.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-1067.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	6.55917126278619	6.50649301576141	6.5185634757427	6.53615536021494	6.32617298441921	6.29442201140213	-0.221981623046727	0.407964707767921	0.781926100186554
Merged-chr12-102461307-3	chr12	102460751	102461751	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7883.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.56179226732503	3.50380111992414	3.67774328657257	3.84690428303981	3.96869510911029	3.9004870930317	1.10679273753556	0.0386060945388303	0.243543283880743
Merged-chr13-60682951-3	chr13	60682453	60683453	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80742.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.51393885910054	7.58647471507329	7.41199989606954	7.77508454997162	8.33510240255101	7.75470014460807	0.6971758614996	0.00822217727709174	0.0877566607070612
Merged-chr5-63825586-2	chr5	63825086	63826086	+	542.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029554, intron 1 of 3)	B4A|SINE|B4	13091.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	4.9426586165186	4.85685595882244	4.96760651685685	4.93968146259771	4.89793508567588	5.16492123887163	0.165889364645473	0.661446975896523	0.90639160796631
Merged-chr19-57610710-5	chr19	57610118	57611118	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-416.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	7.92936724692235	8.1702821382795	8.21273343233515	8.01823168787164	7.83135353176083	8.15370328803539	-0.149148453535322	0.51509837122935	0.84337265078831
Merged-chr15-99000833-5	chr15	99000326	99001326	+	916.2000119999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14861.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	4.28763723926177	4.39121215232282	4.47616160256762	4.70957843603859	4.58824213110799	4.4125744790715	0.498548801276231	0.250699481802394	0.648153521953385
Merged-chr11-22780485-4	chr11	22780056	22781056	+	928.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	79179.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.19787248609417	3.90352573265832	3.89936412938205	3.93747377019499	3.54752939937231	4.36923883613461	-0.0565649081065157	0.923022202255929	0.982641560616013
Merged-chr8-95428357-4	chr8	95427858	95428858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	6511.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	5.59096160659471	5.46126871213103	5.56232602350624	5.35953741680696	5.42849240692861	5.19153635502247	-0.382008910863318	0.257148839959875	0.654457620898992
Merged-chr2-153784834-4	chr2	153784337	153785337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_036629, intron 3 of 7)	intron (NR_036629, intron 3 of 7)	3958.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	5.86733142380896	6.42882093226275	5.85080106387666	6.13653533798952	6.19497495345023	5.96370736119303	0.0286011681310782	0.931305736424896	0.984851910381307
Merged-chr11-79290657-2	chr11	79290157	79291157	+	723.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35962.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.62735448008582	4.53506128003122	4.77718505325273	4.52438078186965	4.81426084332233	4.94730415608189	0.296268067784271	0.479662362654858	0.824363039494411
Merged-chr4-141766990-4	chr4	141766526	141767526	+	991.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172338, intron 11 of 14)	intron (NM_172338, intron 11 of 14)	20351.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	7.40447998413289	7.22420114287381	7.20835700893891	7.48250287389073	7.63116161553257	7.28988896147577	0.29266509745259	0.226039337629643	0.62108381618358
Merged-chr2-118602045-4	chr2	118601542	118602542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3831.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	6.0731598108991	5.72060583278492	5.66971977022146	6.92621002479599	7.07284489214845	6.91032579307222	1.83914952512931	3.94263743615206e-10	4.61405029236766e-08
Merged-chr1-7111587-3	chr1	7111037	7112037	+	878.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	22617.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.06299401142172	3.2484004747535	2.85257277314421	2.96875196990297	2.89529819308764	3.4952995190626	0.336599027207574	0.653567589570579	0.903427295126087
Merged-chr9-119395106-3	chr9	119394606	119395606	+	982.388916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7072.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	2.98513577727415	3.32365125573789	3.17839474514576	3.40750922879926	3.24792705163702	3.81969049715778	1.30361546053548	0.0542033728299415	0.298982714380761
Merged-chr4-134287327-4	chr4	134286823	134287823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	-70.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	6.46957179439614	6.81688011615412	7.00503074672875	6.79037059690483	6.60703317360157	6.77335609795942	-0.0827786594394617	0.768254279214762	0.942864224975033
Merged-chr7-56019100-2	chr7	56018560	56019560	+	675.125	f1_balb.idr|f1_c57bl6.idr	intron (NM_153578, intron 1 of 4)	intron (NM_153578, intron 1 of 4)	513.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	3.02549301370053	2.85246926000327	3.18304072032512	2.97738226474731	3.04037948733656	3.14284948880293	0.143965291127001	0.831825280431745	0.960498992994333
Merged-chr3-135438220-4	chr3	135437756	135438756	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025356)	promoter-TSS (NM_025356)	24.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	8.11975031403051	7.81449940670788	7.70468794807453	7.90743532614795	7.92978650694998	7.51505765058507	-0.131121727825055	0.605016348413935	0.883330817515343
Merged-chr18-36667813-2	chr18	36667313	36668313	+	820.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_028355, exon 3 of 4)	non-coding (NR_028355, exon 3 of 4)	2498.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	2.99753732643154	3.47845079505086	3.48624764974326	3.12277829386952	3.15428095694414	3.11258933820447	-0.855579865070378	0.207190273639794	0.597922113169632
Merged-chr5-9186636-4	chr5	9186114	9187114	+	970.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24838.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	3.78327619675918	3.95000366579792	4.25504619200428	4.11003040204976	4.26077967135406	4.14544386758777	0.510274959607499	0.311446140654166	0.706502339869604
Merged-chr5-95925730-3	chr5	95925232	95926232	+	578.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31207.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	2.99727522591633	2.97870794117796	3.13132046384051	3.18679897415717	2.86571182567052	3.08774793818074	0.0721770579986026	0.915252664870539	0.980959026698783
Merged-chr19-44407916-4	chr19	44407416	44408416	+	979.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-207.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.71644899743018	6.01005736750574	6.10176273349313	6.66841978624667	6.59370321806945	5.8422092556573	0.80468967336053	0.0214679840007952	0.169286202875111
Merged-chr15-100615319-4	chr15	100614830	100615830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011873)	promoter-TSS (NM_011873)	-220.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	8.59208130919954	8.47269944426826	8.27399065397567	8.24258061769256	8.49211264802876	8.20614011318391	-0.18460262539457	0.410150282262429	0.783116615634315
Merged-chr3-135431305-2	chr3	135430805	135431805	+	827.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6927.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	5.34769566629323	5.51800153687519	5.49225102563816	5.58407923799895	5.58890042168921	5.5262150852972	0.220340626319589	0.497853720458234	0.833817084327451
Merged-chr5-121284984-3	chr5	121284494	121285494	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181421, intron 11 of 75)	intron (NM_181421, intron 11 of 75)	64775.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	4.86927263840422	4.97878346251757	4.86865507089125	4.86634902054689	5.06002996450664	4.85824534172365	0.067094456289834	0.860716077269883	0.96760785988803
Merged-chr15-55500253-3	chr15	55499760	55500760	+	821.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181277, intron 44 of 47)	intron (NM_181277, intron 44 of 47)	57052.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	1.84329496751281	1.84997217337128	2.04048425312181	1.66527524668591	1.87265566279959	1.78053871402254	-1.1759582335446	0.26800839911712	1
Merged-chr19-15829291-3	chr19	15828805	15829805	+	925.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	95317.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	3.9081379432581	3.80605359046041	3.86808263682723	3.20781474933219	3.4147998361851	3.40883055679371	-1.87637734839307	0.00187578054428363	0.0293991236633552
Merged-chr8-13672916-2	chr8	13672416	13673416	+	825.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	4671.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.04070647080044	5.98318343606977	5.99872227456647	5.87876042519848	5.87477294893663	6.08134260151784	-0.118097328312216	0.687494079384226	0.917163788391121
Merged-chr13-52914748-4	chr13	52914263	52915263	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	14914.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	5.10160136605523	5.26847063438792	5.23254638936709	4.97635212898305	4.83906742395489	4.75920753280815	-0.721589820261416	0.0538670501337209	0.297660347159427
Merged-chr12-104749180-2	chr12	104748680	104749680	+	712.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	2772.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	3.58788424725671	3.86150221693681	3.55082108570804	3.50912918978787	3.21181764604076	3.72651539545387	-0.660949799667483	0.284036865841088	0.681727804687471
Merged-chr9-22411497-4	chr9	22411000	22412000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026739)	promoter-TSS (NM_026739)	-11.0	NM_026739	68283.0	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	3.62138113293103	3.41398670606499	3.45798277925953	3.48358587184767	3.22091272500507	3.109013804041	-0.84512881798986	0.183959310613063	0.567489204667323
Merged-chr17-35392947-3	chr17	35392453	35393453	+	858.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-1146.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	2.4372319247869	2.33368713848081	2.28847820173859	2.79089218575715	2.52997865289127	2.63588402560782	1.85333309935453	0.0305754794178734	1
Merged-chr16-16358935-4	chr16	16358331	16359331	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276341)	promoter-TSS (NM_001276341)	200.0	NM_152816	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	6.58951394003	6.79164129193115	6.84628695945754	6.55746532305771	6.3067553641872	6.49281560428168	-0.466280835004794	0.0835369730612115	0.382571658015151
Merged-chr1-179802658-2	chr1	179802158	179803158	+	543.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026375, intron 1 of 35)	ID4|SINE|ID	1357.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	4.51856462150183	4.90556370809192	4.54969927956502	4.73426615554854	4.83806102693021	4.81927009181909	0.274521991449708	0.51189264567222	0.841619835183182
Merged-chr18-67187813-1	chr18	67187313	67188313	+	588.0	f1_balb.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-17546.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	2.7892465822062	2.6843056298091	2.85078285491942	2.8525932774019	2.7173888433986	2.73927070074313	-0.0146122839102173	0.983867278262524	0.996443902142547
Merged-chr8-119838535-4	chr8	119838044	119839044	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 2 of 3)	ID_B1|SINE|B4	2035.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.70272064718422	7.44714364979309	7.27905543569235	7.32641004181837	7.57457999047761	7.10887784373481	-0.195877822184365	0.45977163874159	0.813919930991856
Merged-chr1-88306701-2	chr1	88306201	88307201	+	640.333374	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134252)	promoter-TSS (NM_134252)	-11.0	NM_134252	171382.0	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	3.61043989830588	4.13600087413785	3.82536513731614	3.79461420340104	3.53458656523759	4.33723636679277	0.155145870113967	0.80084878486903	0.952706064641965
Merged-chr7-120871544-3	chr7	120871041	120872041	+	810.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001267710, intron 2 of 17)	MLT1A|LTR|ERVL-MaLR	20352.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	4.7265000741857	4.58107285859658	4.47829167566483	4.22900869950009	4.54956570080801	4.32058182091807	-0.550082209271159	0.219711661387837	0.614059113286282
Merged-chr8-105170545-4	chr8	105170053	105171053	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161457)	promoter-TSS (NM_001161457)	-121.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	5.99556327384763	6.07820644641811	6.19047930287436	5.69222895306211	5.82174826327005	6.39689374417735	-0.157427791754452	0.641816305899338	0.899182569727776
Merged-chr11-94371762-2	chr11	94371279	94372279	+	675.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_029600, exon 8 of 31)	exon (NM_029600, exon 8 of 31)	21197.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	5.38988426857793	5.38037195745453	5.96746742537257	5.41728907352515	5.44393046066313	5.46722991955867	-0.289570237569469	0.426637112553591	0.793840707522572
Merged-chr12-3896691-2	chr12	3896191	3897191	+	736.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153743, intron 4 of 17)	intron (NM_153743, intron 4 of 17)	4947.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	5.20786098934943	5.00594102431072	5.04079772172822	4.81760529553032	5.06558034973798	4.67879598631082	-0.454130725150468	0.250921653755286	0.648265562320918
Merged-chr3-75279798-3	chr3	75279274	75280274	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9696.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	3.24190431977091	3.2154540051604	3.48645161479971	3.25632914851507	3.12327784188249	3.39995030017	-0.225709196151758	0.719892018342259	0.927960661644538
Merged-chr1-180810678-2	chr1	180810178	180811178	+	926.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008210, intron 2 of 3)	B1F|SINE|Alu	2927.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	3.24436767656056	3.16336185318673	3.21487874949092	3.41157766593703	3.41272869521679	3.28747086808998	0.678777563981185	0.267010872714121	0.664516381431973
Merged-chr2-157139052-4	chr2	157138555	157139555	+	991.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3833.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	5.61215250043053	5.65412227661784	5.73384038486924	5.70632532402282	6.06196937282435	5.87074602762773	0.417584376561227	0.185833184308183	0.570175160932842
Merged-chr15-100039564-4	chr15	100039044	100040044	+	887.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	880.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	8.4702315866918	8.70275339529569	8.13393700122402	8.44949996736337	8.76711268093604	8.40389396821076	0.127171145140189	0.61199869456191	0.886473391147181
Merged-chr15-96637532-2	chr15	96637032	96638032	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	4430.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	7.06114812258079	7.19423723259903	6.78891931176146	6.92145143590316	7.10153868106329	6.55326669057498	-0.216582564977649	0.447738253482209	0.806673406282428
Merged-chr13-12121937-4	chr13	12121431	12122431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-14986.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	5.24386543848299	5.33362114739439	5.36517115451749	5.50382563361892	5.37578611611651	5.45794925524798	0.258522106165538	0.440165592243742	0.80167050915541
Merged-chr15-53130309-2	chr15	53129809	53130809	+	557.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215874.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.38691706287744	3.35029776152509	3.41546425279225	3.15634083455275	3.17962412070671	3.48554778261882	-0.434892679430184	0.483079284521702	0.826004252216208
Merged-chr7-128418232-4	chr7	128417753	128418753	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026418)	promoter-TSS (NM_026418)	-81.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	5.85748538056055	5.6744890583191	5.83371485224988	5.53512358101832	5.63557660403609	5.5223159985144	-0.401089075185685	0.20439919851731	0.594949662456522
Merged-chr6-115718436-4	chr6	115717933	115718933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40566.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	5.74565584281839	5.63993438994542	4.92709965271988	5.34569148498588	5.40683236800275	5.11537623315611	-0.381072760140618	0.349892237534275	0.737937122671328
Merged-chr14-33118537-1	chr14	33118037	33119037	+	669.5	f0_balb.idr	intron (NM_001146022, intron 13 of 58)	intron (NM_001146022, intron 13 of 58)	66529.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	3.59709336501397	3.48047898176144	3.84319747878847	3.50466527758014	3.38046777392879	3.27645525038986	-0.910374539341918	0.131170515357537	0.484074876563176
Merged-chr18-79327756-4	chr18	79327199	79328199	+	964.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-218308.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	3.2118112946499	2.85496614406751	2.973803180253	2.83639519413659	2.58450985125248	3.04685712736535	-0.929093246596244	0.227299497855794	0.622402368069924
Merged-chr5-4853679-3	chr5	4853188	4854188	+	738.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-95472.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	3.20020319466539	3.31389541366341	3.27381310277766	2.97482271169128	3.02811018947439	3.11665476875822	-0.99202811169796	0.127012727729077	0.476314670819392
Merged-chr3-8767041-3	chr3	8766562	8767562	+	765.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-100024.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.22746068223046	4.26465709404793	3.88467786407308	3.8398310003222	3.52378685625514	3.55862273313372	-1.57977494703846	0.00475909828096313	0.059218640610495
Merged-chr13-41605763-4	chr13	41605253	41606253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-463.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	8.66863409940785	8.42887667790875	8.43702610766081	8.50104293224757	8.46524430784118	8.48141208213032	-0.0503555416489123	0.807585727151668	0.954557080558103
Merged-chr9-62908214-3	chr9	62907714	62908714	+	841.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019663, intron 7 of 13)	intron (NM_019663, intron 7 of 13)	-46190.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	3.43266819993811	3.22056006944524	3.38071000783427	3.16358169916071	3.07798579884083	3.04396031042827	-1.05935120665964	0.100739602824693	0.423286414777412
Merged-chr12-82276370-1	chr12	82275870	82276870	+	687.0	f0_balb.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-34979.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	4.84991584547727	4.85478052089195	5.19906506704092	4.71502081269342	4.44044112526148	4.65474100581624	-0.861659458873118	0.0391034700406737	0.245171594457532
Merged-chr5-93267154-4	chr5	93266628	93267628	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	-445.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	7.43747871057311	7.40635889833902	7.45746355005746	7.3800006181202	7.43150821347601	7.44251960172661	-0.021837936579148	0.921573499962727	0.982542868764899
Merged-chr2-27563936-4	chr2	27563442	27564442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	48795.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.80157622179549	4.2848005113856	4.65019905787796	4.37289893693085	4.38177550423546	4.51646373902605	-0.433749729989984	0.34034071182339	0.730060597467613
Merged-chr8-75152837-4	chr8	75152313	75153313	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43304.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	5.69002219536931	5.90099293974878	6.04832262841168	6.31276928240228	6.34229532713619	6.21542881588856	0.712095607555028	0.0155316812473524	0.136005617460523
Merged-chr13-14063572-4	chr13	14063073	14064073	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	-85.0	NM_010282	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	7.38090827347158	7.4624608110235	7.28510558763424	7.58926212819368	7.75247126805902	7.4751287377722	0.34357884222198	0.139179848601332	0.498423793519242
Merged-chr1-95316162-3	chr1	95315677	95316677	+	849.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	2549.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	5.25865402789714	5.41005754450307	5.31461329518174	5.03370252656991	5.11410450588357	5.25333218918772	-0.405801791278936	0.248739894483983	0.645819769301048
Merged-chr7-127895667-4	chr7	127895165	127896165	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178600)	promoter-TSS (NM_178600)	-48.0	NM_178600	27973.0	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	5.41899683272731	5.54260446749843	5.36178616601562	5.02776523192333	5.28672028111822	5.26836518539935	-0.489526614677571	0.161709665568133	0.534841316980411
Merged-chr18-54917490-2	chr18	54916990	54917990	+	704.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72690.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.44000588842277	4.59813353373172	4.76484248467627	4.77429055543923	4.86361667851692	4.31455320259849	0.197886843716424	0.660610231558988	0.906017078417015
Merged-chr7-83883853-4	chr7	83883380	83884380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_030705, exon 1 of 1)	5' UTR (NM_030705, exon 1 of 1)	461.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	7.77035007146562	7.91617898174241	7.95289555445435	7.76184774709064	7.74915017878295	7.97966458844226	-0.0723301050343107	0.744595691086052	0.936032341688524
Merged-chr6-30509756-4	chr6	30509236	30510236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	37.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	6.4548901034683	6.6424104896011	6.60478221559869	6.49035988839744	6.64278299002651	6.20501545160509	-0.155170305633473	0.582625382797166	0.873817630599109
Merged-chr16-44018575-4	chr16	44018070	44019070	+	923.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359085, intron 5 of 16)	intron (NM_001359085, intron 5 of 16)	-2134.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	4.11367825426113	4.24920772171454	4.11010165206402	5.11173838192753	5.21484948265549	4.90058379764291	2.25105191651392	3.21352961538821e-07	1.99545800177031e-05
Merged-chr18-37999581-4	chr18	37999075	38000075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-606.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	5.17044699741897	5.5115629577794	5.46909463602655	5.43896347940015	5.13665939507528	5.4162652363292	-0.119386929405996	0.73993521611082	0.93436568346332
Merged-chr9-75549202-3	chr9	75548693	75549693	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	10464.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	4.40615308191557	4.2433400116878	4.50965517189756	5.41329649071937	5.32735717241628	5.55650165006585	2.36550267882962	4.67011736183441e-09	4.59327571446238e-07
Merged-chr3-139064529-4	chr3	139064033	139065033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	MLT1G|LTR|ERVL-MaLR	10668.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.79633165771708	5.80522151626912	5.51185645333304	5.88471026131267	5.79063196460553	6.29791509055961	0.492758065348992	0.141999908327054	0.503045315568694
Merged-chr7-41500550-4	chr7	41500093	41501093	+	994.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	-703.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	5.25351194084935	4.96722256950218	5.26346461665926	5.42135124790074	5.3249138252518	5.26344531436637	0.358524317386282	0.314771577536067	0.709088999550579
Merged-chr9-13314145-3	chr9	13313641	13314641	+	964.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur2|SINE|Alu	67185.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	4.10330763608916	4.08320087657254	3.73736559039381	3.50973323485618	3.49105487640146	3.58571950709481	-1.58274804533694	0.004832960699247	0.0597970590254548
Merged-chr7-145292472-1	chr7	145291972	145292972	+	545.0	f1_balb.idr	Intergenic	MLTR14|LTR|ERV1	-8437.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	3.56987009997858	4.01938515613136	4.14479225430969	3.5886471454866	3.61799132798867	3.89975955419914	-0.72175343683622	0.210488595204819	0.602621125710907
Merged-chr16-33937781-1	chr16	33937281	33938281	+	554.0	f0_balb.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	29257.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.24050498101945	4.47310257821219	4.55297095547391	4.18353204216916	4.02415021721524	4.00665685345512	-0.975013007373665	0.0407071520442709	0.251590337019958
Merged-chr8-120119732-2	chr8	120119232	120120232	+	919.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5580.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	5.31677503572014	5.42669972414169	5.36589079940057	5.39398988949323	5.38613232485062	5.39872201294312	0.0411502303846434	0.901630867517294	0.977318811218526
Merged-chr10-117811077-2	chr10	117810577	117811577	+	690.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18372.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	3.14454636431322	2.85411223751592	3.1545701837454	2.90070955303375	2.77313522405307	3.17062342566685	-0.479642579877238	0.503465226174151	0.837052889076112
Merged-chr14-101653792-4	chr14	101653330	101654330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016723)	promoter-TSS (NM_016723)	-137.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	7.3706514422162	7.24208194046643	6.71024746326943	7.13658757844339	7.30630674382773	6.66317512601233	-0.110909621375326	0.72289105908949	0.928972897683858
Merged-chr1-153752714-4	chr1	153752221	153753221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011882, intron 2 of 8)	intron (NM_011882, intron 2 of 8)	3295.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	8.33130870706225	8.6739881924743	8.32298346633574	8.24856078968309	8.84129647867769	8.23815424539725	0.0375034455664537	0.888524174384667	0.974043020158646
Merged-chr7-114144164-3	chr7	114143664	114144664	+	831.305542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D10|SINE|Alu	-26383.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.86470264363902	3.44481280700271	3.27453911249741	3.12351906781152	2.81385402309918	3.22772941878585	-2.11908026837303	0.00413080507410563	0.0531903479737204
Merged-chr11-53519829-4	chr11	53519332	53520332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	96.0	NM_001347496	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	7.17392942825453	6.92801415735172	6.98890422746873	6.77976196714892	6.3647209602317	6.35838682608989	-0.807476620578961	0.00378086523538756	0.0498808045831819
Merged-chr11-62466759-3	chr11	62466254	62467254	+	775.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 1 of 6)	intron (NM_001039536, intron 1 of 6)	8294.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	2.55608578423707	2.35258343813683	2.41371326361808	2.57184261149275	2.37679293693079	2.61689690316593	0.465052293816125	0.567787614282821	1
Merged-chr11-115065455-1	chr11	115064955	115065955	+	549.0	f1_c57bl6.idr	Intergenic	Intergenic	-3416.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	4.48000961172969	4.7711734757238	4.86021037723433	6.27222353841393	6.09086267969995	6.18445558786529	2.92571427404101	1.11388992487814e-15	3.4843816868143e-13
Merged-chr18-52568135-2	chr18	52567635	52568635	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38268.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	4.98565550201766	4.86610016658452	4.84401752023328	4.80010903819107	4.58303585287198	4.44910209956445	-0.641811314713069	0.117232705480952	0.457311976431135
Merged-chr2-130664324-4	chr2	130663924	130664924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029832, intron 1 of 8)	CpG	221.0	NM_029832	77006.0	Mm.440063	NM_029832	ENSMUSG00000068290	Ddrgk1	1110001I20Rik|2600009E05Rik|AI326138|Ufbp1	DDRGK domain containing 1	protein-coding	8.10119785931194	8.46183858504852	7.93970378265747	8.02085930827776	8.26580973833033	7.66996075433889	-0.246788125816906	0.362315850314211	0.74782499303743
Merged-chr15-86191629-4	chr15	86191123	86192123	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-5482.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	7.61876552618933	7.32523614225133	6.99143155202287	7.09659420612936	7.51945417329373	7.08967673598922	-0.128172824844235	0.65857403334053	0.905014667687917
Merged-chr4-3083389-2	chr4	3082889	3083889	+	814.916687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88694.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	2.64998168695203	2.67919020490308	2.84977374266374	2.71755677598541	2.63110108011506	3.08490090400411	0.492815191407144	0.517281066122466	0.844527100635531
Merged-chr14-27189750-2	chr14	27189250	27190250	+	645.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	45757.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.52293316465108	3.85548908608237	4.00931627507152	3.77329121062669	3.45158743585412	3.79579625440544	-0.425805924332818	0.463343360382848	0.815799621886541
Merged-chr9-96525294-4	chr9	96524803	96525803	+	875.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46628.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	2.76666114876157	2.73244611746339	2.85828257480313	3.25003470114036	3.21313392343374	3.83539816057141	3.25074453946813	5.54893174314281e-05	0.00172153434930435
Merged-chr17-65786418-4	chr17	65785920	65786920	+	867.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	3065.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	4.613464641403	4.5215771275894	4.82069984956689	4.91832442458703	4.49703220498892	4.92063885474654	0.313578359161887	0.465603955745808	0.817146354802119
Merged-chr2-32586997-4	chr2	32586518	32587518	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-60.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	6.76378696629668	6.77470462754166	6.77623699178696	7.2067571219085	7.07996346253793	6.81942227486272	0.432134278410343	0.0896431351527375	0.397814719455412
Merged-chr5-36742059-3	chr5	36741532	36742532	+	726.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6647.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	3.64411937936725	3.72595346053448	3.50137322243643	3.93384498044497	3.62007763959295	3.98330895108016	0.719315441343321	0.201554863855685	0.591047651513792
Merged-chr12-40471601-4	chr12	40471107	40472107	+	822.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	25554.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.66202753589278	4.32128165738666	3.96480726866459	4.24580575302259	4.48208375250613	4.09250647280964	-0.169416034879589	0.746510493841311	0.936300236930265
Merged-chr8-22059983-3	chr8	22059479	22060479	+	786.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	95.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	3.65395916607645	3.65166495857038	3.64551726164269	3.50061067818167	3.41515438892129	3.50081053820735	-0.654646123942662	0.243817550663862	0.640958811221234
Merged-chr5-34559632-2	chr5	34559132	34560132	+	606.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_001145858, exon 8 of 13)	exon (NM_001145858, exon 8 of 13)	10056.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	2.091836181532	2.16126488571716	2.35576736024579	2.13461702640856	1.99994648483233	2.04165416096841	-1.11321621685513	0.230133725046506	1
Merged-chr11-6388370-2	chr11	6387870	6388870	+	614.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6755.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	4.69124630947611	4.7083756646698	4.9307011196958	4.9291856373396	4.85296924092605	5.27906005616994	0.55050924413375	0.171014953969021	0.548963962743078
Merged-chr15-9133341-2	chr15	9132841	9133841	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7113.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	5.39397193890109	5.84425461423246	5.57150898895614	5.46495609090942	5.58906641055886	5.78932314913781	-0.0124953382966309	0.971147508931124	0.993727127580947
Merged-chr2-167696810-3	chr2	167696409	167697409	+	852.5793460000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_110334, exon 2 of 2)	non-coding (NR_110334, exon 2 of 2)	5732.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.29885349213722	5.14368914720231	5.95892084823844	5.46585676531282	5.89623982709292	5.67049643635834	0.349906716018065	0.37957911997551	0.761960372847995
Merged-chr5-142904414-2	chr5	142903914	142904914	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_007393, exon 4 of 6)	exon (NM_007393, exon 4 of 6)	2340.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.7078715157374	4.50589990072427	4.79956759086194	4.54247625711205	4.60402192173433	4.93187503563266	0.0572520636138232	0.892899560572538	0.975146620821922
Merged-chr1-171344552-2	chr1	171344133	171345133	+	636.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360825)	promoter-TSS (NM_001360825)	-321.0	NM_001360825	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	4.31876684733528	4.51524618263696	4.343518421653	4.30618905337417	4.24206253108028	4.32190193902515	-0.294974239805033	0.509153134260911	0.840256821151416
Merged-chr2-164832471-2	chr2	164831971	164832971	+	742.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001038492)	promoter-TSS (NM_001038492)	-401.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	5.20835474249779	5.36539135285674	5.18041090346945	5.35988821801378	5.22465373465916	5.30964536557047	0.0738617676775383	0.831543186374045	0.960464332375456
Merged-chr14-55735307-4	chr14	55734799	55735799	+	971.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	10385.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	7.82113302059687	7.64811964668876	7.6072092626023	7.74275835408431	8.09768974022438	7.63504786879934	0.217993274177665	0.375360654731427	0.758646622209238
Merged-chr15-34580090-4	chr15	34579558	34580558	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145469, intron 8 of 10)	intron (NM_145469, intron 8 of 10)	84747.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	4.56308669560459	4.78517416932218	4.75677244719644	4.43577841650385	4.19319212738616	4.59299816081004	-0.740661590296657	0.0925361389143342	0.405215908567243
Merged-chr4-102487397-2	chr4	102486897	102487897	+	552.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019840, exon 2 of 15)	exon (NM_019840, exon 2 of 15)	-82663.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	2.45639209496838	2.44860252968177	2.56647231444413	2.39978066327326	2.45353872367843	2.31766109690182	-0.587472137441507	0.472726125689508	1
Merged-chr18-77774038-4	chr18	77773539	77774539	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357532)	promoter-TSS (NM_001357532)	-154.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	8.31531397879021	8.49573102524051	8.07354621969253	8.1513877900626	8.24876913111124	7.77125183424227	-0.323923648733865	0.193997912937238	0.581296310830689
Merged-chr11-117109834-4	chr11	117109337	117110337	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5335.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	7.64743860592145	7.53664205806974	7.17675158097168	7.24965858153922	7.63599198277264	7.08856012089754	-0.174996790181296	0.530706693417823	0.851304720575858
Merged-chr2-35493725-4	chr2	35493361	35494361	+	988.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32412.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	4.24569299150189	4.0602360117681	4.44584124551533	3.93168455791933	3.6030094705736	3.84043819023048	-1.39231187362632	0.00851768077792897	0.0900901464560714
Merged-chr19-8839903-2	chr19	8839403	8840403	+	881.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290823)	promoter-TSS (NM_001290823)	575.0	NM_008144	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	3.38544430678122	3.12502777462482	3.59422766460115	3.27276995321642	3.52531814207053	3.28753406404921	-0.0143938862609352	0.982131848613057	0.995980212202506
Merged-chr9-66594315-3	chr9	66593825	66594825	+	635.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1210.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.55539008906011	5.47570349569494	5.85539810221116	5.53272336401612	5.63374647204295	5.98228068686191	0.170400427031072	0.619302131145968	0.889749463061948
Merged-chr7-19202694-3	chr7	19202168	19203168	+	797.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347582, intron 19 of 21)	intron (NM_001347582, intron 19 of 21)	-9870.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	3.14237999807182	3.06275037839686	3.20773060058199	3.6421237062074	3.24160817232549	3.39629097277333	1.22014140342659	0.0565174410801143	0.306564748200401
Merged-chr9-64824882-4	chr9	64824380	64825380	+	985.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	13869.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	4.05427638894664	4.05087622589289	3.75519701399969	3.83022617203959	3.95101963289051	3.87990981443594	-0.240519439460948	0.642168573860244	0.899352614913166
Merged-chr16-90924852-4	chr16	90924363	90925363	+	794.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_026502)	TTS (NM_026502)	9986.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	3.5893547264034	3.54480402766642	3.7469673250615	3.3736190308961	3.24695371853155	3.51199794850908	-0.941787739723025	0.110922199195344	0.444841551070303
Merged-chr11-53301428-2	chr11	53300928	53301928	+	676.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-949.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	8.25484948068561	8.52969829575059	8.24460351961715	8.06838372810549	8.44187224840796	8.15496694842636	-0.162263621809574	0.487209363648187	0.828372396870356
Merged-chr8-9978555-2	chr8	9978055	9979055	+	794.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081119, intron 1 of 1)	intron (NM_001081119, intron 1 of 1)	838.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	5.73796589154431	5.52979113684984	5.37274452616002	5.97238068124718	5.86710234436868	5.33600405009258	0.371273835226609	0.30445916975377	0.700969682849711
Merged-chr11-114523483-4	chr11	114522997	114523997	+	783.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74637.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	3.02299786412601	3.10581145558706	3.31855992653259	3.90766877204846	3.87147139201541	3.82925298509498	2.9755536996901	7.10525714975273e-06	0.00029919748831813
Merged-chr4-133012484-2	chr4	133011984	133012984	+	988.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146155, intron 2 of 6)	CpG-10425	978.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	4.04632461465608	3.90318910698544	4.08125055078065	3.83728724574819	3.45361507640789	3.33962674248022	-1.47403184727395	0.0143361567333991	0.128791608169249
Merged-chr16-70329686-4	chr16	70329169	70330169	+	976.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15720.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.7596040180269	5.84417272883489	5.74531332129272	6.93382871895446	7.21563451756501	6.62119684903771	1.91519389149746	1.69035165671759e-10	2.14948540762869e-08
Merged-chr11-83191246-4	chr11	83190745	83191745	+	834.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011409)	promoter-TSS (NM_011409)	-85.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	5.84829426768813	6.04740320630719	5.77688532644094	6.24247189399185	6.22015438492258	5.6995468401866	0.324997041257341	0.320282885419727	0.714117217900186
Merged-chr19-29370212-4	chr19	29369664	29370664	+	802.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	2726.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	5.25577849610047	4.9254453234941	5.5121115038456	5.94920751746303	5.91357030016499	5.73714991553086	1.20094081970975	0.000681767332826063	0.0134141632134762
Merged-chr2-148684920-2	chr2	148684420	148685420	+	766.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_028986, exon 2 of 6)	exon (NM_028986, exon 2 of 6)	3800.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	5.0096035208129	5.26811709382704	5.10583231178033	5.29724588843518	5.38080111617725	5.53694087082723	0.537282656701196	0.130470730300187	0.482676025154672
Merged-chr3-89913819-2	chr3	89913319	89914319	+	575.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-623.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	5.59317991252894	5.63659982061083	5.5618279565328	5.51383578629866	5.66567592527042	5.56773483629025	-0.0216938659091503	0.945681844716661	0.98796006280508
Merged-chr11-48858157-4	chr11	48857672	48858672	+	925.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13248.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	5.05328074741169	4.72411241158847	4.56391698569121	4.5996207287151	4.6461471707185	4.49854611704653	-0.510711693284372	0.234243123661504	0.630430842226563
Merged-chr8-83609261-3	chr8	83608746	83609746	+	840.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308227, intron 1 of 2)	intron (NM_001308227, intron 1 of 2)	698.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	5.13118838432335	5.28604839861174	5.14201915185805	4.95935078048451	5.09163734527513	4.92053969762872	-0.401543677202243	0.273070961857268	0.670306681833596
Merged-chr4-43974575-2	chr4	43974075	43975075	+	892.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_027450, intron 4 of 4)	AT_rich|Low_complexity|Low_complexity	-8929.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	5.52829164837695	5.25908997670975	5.15977910507893	5.39134737184566	5.26789884580007	5.19014019972909	-0.0896242041340474	0.801956557582698	0.953110913034068
Merged-chr18-32361594-4	chr18	32361070	32362070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045403, intron 2 of 2)	intron (NR_045403, intron 2 of 2)	-15647.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	6.53801603189863	6.16994372235307	5.98312041841031	6.21896022680161	6.68729276456255	6.25133559283582	0.252526022768129	0.438681331489146	0.800706259033252
Merged-chr5-92375944-3	chr5	92375438	92376438	+	837.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12196.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	6.93741952488771	6.82849699130548	6.52401872053624	7.09866918474983	7.10219553421518	7.01228258001974	0.4407240716576	0.0895012934343199	0.397460832795159
Merged-chr4-139617404-1	chr4	139616904	139617904	+	571.0	f1_balb.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-5490.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	4.88780399556246	4.96825323258139	5.46076150383496	5.01031998652696	5.05997897049414	5.1769690402973	-0.0743835663312097	0.851039997044512	0.965061750604137
Merged-chr11-78745722-4	chr11	78745230	78746230	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5999.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	5.83491048728022	5.73629785388692	5.26639334382684	5.28440863854978	5.49488466961833	5.36494354530121	-0.491907519550072	0.170334425364108	0.547723209378173
Merged-chr5-72812843-4	chr5	72812334	72813334	+	933.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55614.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	6.36564590931798	6.47655345174137	6.1503971930431	5.74861523059811	5.6664686496209	6.03585441151068	-0.915382300875811	0.00268295154497665	0.0386903002000724
Merged-chr11-51635857-4	chr11	51635371	51636371	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	25.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	7.38005294116452	7.56314181842389	6.89888738815026	7.24142404258033	7.32817395425445	6.7273287218671	-0.274322999751062	0.370255379543246	0.75468690157258
Merged-chr1-134955991-4	chr1	134955477	134956477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081307)	promoter-TSS (NM_001081307)	-37.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	5.47544653697156	5.59319220218917	5.36787485690145	5.50658915923804	5.35833292111001	5.00934237019927	-0.327748222958132	0.363364019056852	0.748994025844601
Merged-chr6-29827400-4	chr6	29826924	29827924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-26317.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.66056767842667	4.77334183529639	4.8926177873094	5.2160185656451	4.98152775899558	5.22577508664109	0.799654349574248	0.0372913205328792	0.238339058214902
Merged-chr11-95688618-4	chr11	95688109	95689109	+	979.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21652.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	7.02599176609646	7.10672767006565	7.38566040261791	7.03688947247279	7.13653341306992	6.90929327813779	-0.207198550414458	0.414972531278499	0.786115461363139
Merged-chr9-107553664-2	chr9	107553164	107554164	+	847.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-919.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	5.32957759716475	5.15332390826584	5.31906923826298	5.17228709100592	5.16057020058882	4.97669247687731	-0.314045321465139	0.38134181015576	0.763080052613635
Merged-chr10-10396284-4	chr10	10395778	10396778	+	947.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 21 of 36)	intron (NM_001127353, intron 21 of 36)	76036.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.18912117535981	5.40466484512222	5.16051872969441	5.47564531188814	5.61299288294629	5.74943114971578	0.674261507028123	0.0497311528549059	0.283659841427955
Merged-chr10-53519092-3	chr10	53518578	53519578	+	732.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_037973)	promoter-TSS (NR_037973)	-89.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	3.1056242959237	2.9130027972054	3.05629357594927	2.85322692511825	2.52391743878246	2.82903372159789	-1.49425459888465	0.0537066242509848	0.297109287326371
Merged-chr10-121489297-3	chr10	121488795	121489795	+	898.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID4_|SINE|ID	-13045.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.63864208575323	6.71355342207463	6.79946430705358	6.25943713086072	6.50889127288309	6.57760510932938	-0.417640882233828	0.119726804757494	0.462471223255784
Merged-chr19-30031981-2	chr19	30031481	30032481	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1468.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	6.08513734951556	6.01278907893699	6.05744624850687	6.19093592441972	6.56105929861334	6.32778773637	0.545466015650962	0.0594698219705919	0.315718219663216
Merged-chr5-30920742-4	chr5	30920234	30921234	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	-825.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	6.86647182311081	6.96017858655314	7.09211112198596	6.84477305020519	7.0243311882244	6.89705987386459	-0.0651600520852097	0.792964799981843	0.950155903474372
Merged-chr15-99398636-3	chr15	99398174	99399174	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	5455.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	3.78607432128234	3.84520861826058	3.78964658468357	3.63796663004868	3.65323900656837	3.80865270760103	-0.36941774523751	0.485673375438511	0.82753635220313
Merged-chr4-88864758-4	chr4	88864239	88865239	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	14652.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	5.77848864313895	5.69772950305766	5.72459513704012	6.01206787469672	5.60560203544792	5.70683285264462	0.0918831235864788	0.775552348902032	0.944682505926692
Merged-chr10-80740376-2	chr10	80739876	80740876	+	587.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	1899.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	4.59917369887073	5.10663686328781	5.25269233113158	4.83895352225693	5.07634952141069	5.1946843935451	0.0704876395644785	0.86723005105952	0.96931826298411
Merged-chr13-59005457-2	chr13	59004946	59005946	+	687.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197749.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	3.5397320153683	3.58423047917851	3.38722795639835	3.32519447718435	3.2552773012553	3.51378061532161	-0.569330403705236	0.341546069410155	0.730894271945484
Merged-chr10-127300878-2	chr10	127300378	127301378	+	579.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 11 of 20)	intron (NM_001003913, intron 11 of 20)	10085.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	2.28905459575645	2.29300153098435	2.56790239764744	2.23314657692911	2.36904916855305	2.45773889306602	-0.190251550246466	0.822365763907096	1
Merged-chr13-41098542-2	chr13	41098043	41099043	+	784.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11445.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	3.7938588252099	4.07058052182352	3.90168920741123	3.65851610655674	3.8459829826384	3.76710701848297	-0.527983389601027	0.319977691659031	0.713841334732408
Merged-chr19-53395571-2	chr19	53395071	53396071	+	550.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4937.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	2.76383720925589	2.65613795685793	2.75487495174728	2.47229910308165	2.37048348837002	2.51471404252202	-1.71041573809333	0.035727201970844	1
Merged-chr18-12224097-4	chr18	12223605	12224605	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	12281.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	7.83343383554092	8.1205514802736	7.97428293656797	7.84472306931789	7.87461936491567	7.61445005674607	-0.276612072444778	0.227621910325665	0.622808210644087
Merged-chr15-59759833-4	chr15	59759324	59760324	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35135.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.23558754055752	4.02665673578139	4.47769756769061	4.1316253787974	3.60366401564378	3.92973435591419	-1.02003360870461	0.0613254065695598	0.321069932035483
Merged-chr15-77801378-4	chr15	77800872	77801872	+	740.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	40803.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	6.68639860829693	7.14509823323764	6.71486799882692	6.94231499077685	6.90022870094151	7.29401683844841	0.273772205640423	0.339944065343429	0.729624065958935
Merged-chr16-91855022-2	chr16	91854522	91855522	+	842.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	76608.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.95759291022853	4.55132543145742	5.10062153774965	5.03086500849583	5.08254423049853	5.031095609215	0.368079718404223	0.361767063947102	0.747478680384173
Merged-chr13-30767077-4	chr13	30766584	30767584	+	943.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_013674)	TTS (NM_013674)	17851.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	5.26428290651798	5.35155492740495	5.56832868075968	5.29862616185791	5.38171018869552	5.49406944194414	-0.00295242136810852	0.993132349152635	0.998651348330892
Merged-chr13-92964362-4	chr13	92963854	92964854	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	X7B_LINE|LINE|CR1	-108950.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	3.50786618991955	3.66772817099618	3.83518245047677	4.73202690982169	4.67499497080119	4.36111487913844	2.83049167247092	1.24607142837059e-07	8.69824760166611e-06
Merged-chr14-10229362-3	chr14	10228840	10229840	+	683.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	224118.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	2.45516722470351	2.60383270121458	2.57770616723409	2.73284965510405	2.66578624609153	3.01106951115515	1.43088261658313	0.0682725758160287	0.341765400583571
Merged-chr15-93485504-3	chr15	93485012	93486012	+	828.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358750, intron 6 of 6)	intron (NM_001358750, intron 6 of 6)	87048.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	3.81171457752899	3.98903872262718	4.49372216188468	4.11429344592035	3.87328749548315	3.9654800381263	-0.387783582071287	0.475133879459574	0.821727753368561
Merged-chr8-46908366-4	chr8	46907865	46908865	+	881.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78522.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.67114822704458	4.46262717280192	4.94434956312009	4.74673677768963	4.83819337874435	4.83306815953137	0.258835660271642	0.534041829998457	0.852827033691807
Merged-chr3-87522722-2	chr3	87522090	87523090	+	997.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2988.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	5.03100791424928	4.65493528013693	4.86065797184755	4.33889416512262	4.42446863250064	4.35399355445651	-1.16590533135047	0.00705926183716005	0.078653864347404
Merged-chr4-124843654-3	chr4	124843136	124844136	+	617.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008636, intron 10 of 10)	intron (NM_008636, intron 10 of 10)	6928.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	2.17616062150311	2.14305199812295	2.41325055661899	2.02071987826759	2.07277675609288	2.3007288742668	-0.807694596043005	0.378956989737021	1
Merged-chr2-129589075-2	chr2	129588575	129589575	+	736.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3764.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	3.88668193313515	3.66470944430331	3.58398093136884	3.27128512855914	3.33067379251039	3.54660008610979	-1.25452115445402	0.035371826064556	0.23089277765921
Merged-chr16-94549969-3	chr16	94549477	94550477	+	703.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20229.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	2.38733767767772	2.42314987592084	2.72158507729974	2.575596674389	2.38086562622582	2.42583839355593	-0.31147499955978	0.704978610131072	1
Merged-chr17-70848004-4	chr17	70847479	70848479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	-1202.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.33511734851645	7.59308904019358	7.22613505960282	7.31564853974106	7.71979165159518	7.56488852937345	0.215588876620702	0.398732996424391	0.775380942917122
Merged-chr2-155517922-4	chr2	155517426	155518426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019811)	promoter-TSS (NM_019811)	-117.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	6.34887405920145	6.23839188053299	6.27380130329357	6.40707928747013	6.26757560145974	6.0509386364731	-0.0511333610800004	0.857108920080232	0.966681760410265
Merged-chr1-39368384-2	chr1	39367884	39368884	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252219, intron 2 of 4)	CpG	533.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	7.56218328084502	7.80091553218942	7.54446430593717	7.66654567434722	7.5864232973087	7.42485551517626	-0.113767035587569	0.626008411062778	0.892770422921587
Merged-chr19-10979961-4	chr19	10979455	10980455	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-5285.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	5.29398077743056	5.36877983510986	5.46497950791037	5.43100465367245	5.49546635687023	5.68844819718389	0.315128818430648	0.34563743591438	0.734044780000853
Merged-chr19-11788028-3	chr19	11787533	11788533	+	900.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	17618.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	5.18526336321439	4.88658697404679	4.93475409167637	4.50744335401187	4.45872948477361	5.09917231521954	-0.679247965404372	0.124650865290999	0.472306664538883
Merged-chr17-35126465-4	chr17	35125946	35126946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_033477)	promoter-TSS (NM_033477)	44.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	7.67003521185441	7.87087808156571	8.08511028861819	7.55555389076426	8.0199349754903	7.70179410210595	-0.145988566163481	0.568427712564499	0.868549528189122
Merged-chr11-5012460-4	chr11	5011967	5012967	+	925.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	25643.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	5.68984245798347	5.82198883299681	5.86729286894366	5.3798990633574	5.4652313481528	5.68276797962271	-0.528545277973628	0.10159348523404	0.42520419137215
Merged-chr15-38289719-4	chr15	38289193	38290193	+	819.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10207.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	6.88973068838179	6.91138333177234	6.99773896280997	7.05138450278131	7.34813295360322	7.23032131349151	0.437227939751987	0.0741771662364797	0.358274301574931
Merged-chr7-127912468-4	chr7	127911970	127912970	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026370)	promoter-TSS (NM_026370)	-47.0	NM_026370	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	8.14194998119015	8.33624722955606	8.17075093860444	8.06845033527414	8.27774565695424	7.98449970776234	-0.139534860029461	0.527429215387495	0.849959198694232
Merged-chr16-23234761-4	chr16	23234249	23235249	+	881.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8728.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.77934779018475	4.56842874924515	4.61828446265035	4.61755891504045	4.4221787960382	4.4285383718207	-0.409585194013081	0.334007177590616	0.724748007849347
Merged-chr2-168539246-4	chr2	168538760	168539760	+	978.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037177, intron 3 of 6)	MER3|DNA|hAT-Charlie	51105.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.22197737390474	6.47490304499638	6.39360708872185	5.99579985470378	5.46840110010069	5.66782639700793	-1.10807471282921	0.000582624930447681	0.0118588686919498
Merged-chr9-118663623-2	chr9	118663056	118664056	+	938.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-48136.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.16740425586459	7.94973494018978	8.05927065012117	8.14717370070691	8.25669270935637	8.05782614070857	0.139368036049355	0.517349094434382	0.844527792582824
Merged-chr5-72329620-4	chr5	72329094	72330094	+	977.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122756, intron 16 of 21)	intron (NM_001122756, intron 16 of 21)	126251.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	3.73894173114695	3.72055103066349	3.66247543683516	4.14716734106355	3.72188075687491	3.78887063857699	0.607815443070775	0.265047837043465	0.662839771217229
Merged-chr13-107017706-2	chr13	107017206	107018206	+	579.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	4408.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	2.26535650221269	2.27353490360057	2.39822988545447	2.40174250229687	2.38388155854981	2.59687686652691	0.966821680866303	0.243303121981457	1
Merged-chr5-120611512-2	chr5	120611012	120612012	+	838.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_029096, exon 2 of 3)	exon (NM_029096, exon 2 of 3)	1077.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	2.82100330216674	2.52552570651616	2.84584293271837	2.74967797542441	2.63163875798834	2.60778513347988	-0.3827991085284	0.619250994630398	1
Merged-chr5-103820442-2	chr5	103819942	103820942	+	562.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65869.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.27973316891225	3.13978219606371	3.16021955475543	3.41864832824971	3.38059956610773	3.4065596870633	0.826436157038456	0.17800798561372	0.559020435786437
Merged-chr4-41555911-1	chr4	41555411	41556411	+	602.0	f1_c57bl6.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	13616.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	4.62560512719784	4.50970649414345	4.8090208110787	6.14727643912724	6.1566064535404	5.33845364165529	2.6265717261157	1.24048361184627e-10	1.63838349800801e-08
Merged-chr5-21737189-4	chr5	21736700	21737700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028431)	promoter-TSS (NM_028431)	40.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	5.7268295400564	5.69405054033244	5.31458345807917	5.79676841143902	5.51600903291757	5.47651931994003	0.00465728979815743	0.989250316463208	0.997570598107844
Merged-chr5-146810817-4	chr5	146810330	146811330	+	792.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15874.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.20668714030456	6.28293165720044	6.14622925379943	6.36645499031376	6.66429418242756	6.16268279770933	0.350073646358553	0.236412896220729	0.632720263621021
Merged-chr10-39412952-4	chr10	39412449	39413449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	43150.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.91822019476551	7.94304976316091	7.44587374451467	7.55366621376322	7.68457268495868	7.27024230847535	-0.39666245580783	0.133453083402051	0.488692066303093
Merged-chr11-118488469-2	chr11	118487969	118488969	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_153103, exon 14 of 14)	non-coding (NR_153103, exon 14 of 14)	11637.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	3.69731840573714	3.47328026612582	3.99437010821057	3.60829466861445	3.54522291332409	3.63085606973631	-0.466427471151742	0.419083413379643	0.788801788481746
Merged-chr10-127602751-4	chr10	127602253	127603253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	18395.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	7.31045539196269	7.28641147369895	7.46191789304402	7.66996816087933	7.64092782500132	7.26439471578318	0.286405992904761	0.242511847712576	0.639642928115406
Merged-chr7-16729666-2	chr7	16729166	16730166	+	925.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	7737.0	NM_011927	26368.0	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	3.21561174357836	3.26784592711038	3.18369256475306	3.34541314190751	3.17390278370248	3.31338808324478	0.210416151336417	0.734324414925561	0.932394340431027
Merged-chr7-80846111-4	chr7	80845624	80846624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15984.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	7.220409180532	7.37117063571861	7.46731338633866	7.38355630809195	7.62551372951799	7.30967546699028	0.149764332562943	0.536586616878766	0.854055228150433
Merged-chr14-31001601-4	chr14	31001084	31002084	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026911)	promoter-TSS (NM_026911)	82.0	NM_026911	69019.0	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	6.80766619781109	6.90407785749332	6.71137008412438	6.4182825223301	6.71838277122247	6.37827395059437	-0.45416714577094	0.0951709292874809	0.411148363215922
Merged-chr10-41980941-4	chr10	41980448	41981448	+	922.7625119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001034858, intron 5 of 17)	MIRc|SINE|MIR	37434.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	2.82718273170456	2.8283966710633	2.79431790073128	2.56691635429059	2.46037885334805	2.74534007956125	-1.3031998491707	0.0943090825767164	0.409202176724379
Merged-chr7-43678491-3	chr7	43677968	43678968	+	723.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145582)	TTS (NM_145582)	6437.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	3.15172480271149	2.92961410587839	3.41562138371766	3.31526767597425	3.03734467267049	3.68159594720364	0.751767100420226	0.286346352560412	0.683634696330879
Merged-chr18-12927583-3	chr18	12927044	12928044	+	949.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	14297.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.16030727794653	4.17700909290373	4.14598997921663	3.7589764960843	4.07327547164609	4.38417183925281	-0.202417657983817	0.694563845999419	0.919210273513843
Merged-chr11-86997558-2	chr11	86997058	86998058	+	607.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3796.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	1.95860844226425	2.08551829085978	2.02278215919729	2.1729159956647	2.10720285193135	2.36235915070965	1.4343153165048	0.124409698098962	1
Merged-chr8-71405984-4	chr8	71405474	71406474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172756)	promoter-TSS (NM_172756)	-38.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	4.95522140038535	4.88398688824316	4.89082116125989	4.88685995040653	5.01377141748083	5.09587639634966	0.190020573662831	0.612337187935392	0.886694626735313
Merged-chr10-118893444-2	chr10	118892944	118893944	+	756.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24541.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.23682574138976	3.73335266409896	4.26531987582559	4.19233509539944	3.62916750877714	3.80945132122841	-0.584516743614097	0.310257622266587	0.705829393476587
Merged-chr3-127457960-1	chr3	127457460	127458460	+	679.333313	f0_c57.idr	intron (NM_001327938, intron 1 of 47)	B2_Mm2|SINE|B2	41155.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.67648793923902	2.77199852572453	2.7738099358073	3.4093691305721	3.6449319051307	3.24452902101685	3.81941064534125	1.21537240778465e-05	0.000473449004245996
Merged-chr13-100448828-2	chr13	100448328	100449328	+	591.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008670, intron 1 of 15)	MTD|LTR|ERVL-MaLR	4036.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	2.93628580041149	2.86084466386911	2.78822149965178	3.07788993504195	3.18373824482684	3.16962821940434	1.30348074363176	0.0593558865190831	0.315503041106418
Merged-chr18-53161043-2	chr18	53160543	53161543	+	831.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15249.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	3.86641473300679	4.01864546614908	3.84154996651938	4.36599773679056	4.38069013970478	4.26281917747822	1.20673481215848	0.0127488906830941	0.119312754016297
Merged-chr12-76943202-4	chr12	76942689	76943689	+	982.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	19059.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	7.02958331352271	7.31789112330009	6.96872963639083	7.13709591524429	7.11381734736902	6.60938420699557	-0.202145441266129	0.47407683736009	0.821247589845698
Merged-chr1-180888436-2	chr1	180887936	180888936	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4672.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	4.8203793529242	4.99174979464487	4.98740275829656	4.95806656949494	5.00002191828363	5.21555517108783	0.262407681244052	0.486681805071241	0.827985697457807
Merged-chr17-87281548-4	chr17	87281004	87282004	+	869.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_015506, intron 1 of 4)	intron (NR_015506, intron 1 of 4)	1310.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	7.05563268794064	6.88813156616372	6.85399294287827	6.79520153535786	6.78826644328989	6.62631031015376	-0.302838457404223	0.230328330628048	0.626192360633515
Merged-chr14-77036762-4	chr14	77036267	77037267	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	-5.0	NM_001310648	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	8.35214567982261	8.24504566961994	7.95697618582923	8.64876177901355	8.58393155442172	8.3594226298952	0.471377422066112	0.0397220304804182	0.247815338147581
Merged-chr10-99181095-3	chr10	99180558	99181558	+	796.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	72923.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	8.07135105599676	7.83035037919646	7.27428415946012	7.76274086708567	8.09411434257487	7.20095218883829	-0.0391178907824068	0.905622189003515	0.978425344945364
Merged-chr4-46554870-4	chr4	46554377	46555377	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	11563.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	7.29941314029398	7.09073252054405	7.2860535274769	7.24829561628302	7.42179788754434	7.04586474389306	0.0462501956490331	0.853085844589084	0.965597129346461
Merged-chr10-37192220-7	chr10	37191739	37192739	+	976.904785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-53313.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.13128962456595	5.81351778885293	6.24335893559539	5.70880719791704	5.93495491980173	5.79607820952805	-0.429823057893906	0.175977988726673	0.556082959363853
Merged-chr2-129548481-2	chr2	129547981	129548981	+	730.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11879.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	4.71582839941787	4.6872696704553	4.89836391422453	4.47657284433335	4.73929862785108	4.85739926332287	-0.154205173847075	0.709393260163059	0.923961035007839
Merged-chr16-17012799-4	chr16	17012311	17013311	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038663, intron 1 of 7)	intron (NM_001038663, intron 1 of 7)	29429.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	5.11241861705258	4.78590306006394	4.81152903705016	4.65780928145497	4.79396629103318	5.15243496499035	-0.0912820076595126	0.826147638970405	0.95909385193305
Merged-chr13-43766504-2	chr13	43766004	43767004	+	819.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-18608.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	5.70096649205445	5.38796036571256	5.17733479787538	5.4201316834268	5.34288694428314	5.34337281402477	-0.160672499084345	0.653659406225955	0.903478727917961
Merged-chr11-90242602-3	chr11	90242105	90243105	+	850.166626	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-6871.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	4.26110413960079	4.18791253699999	4.12782807121557	3.85679117213641	3.59882616495569	3.74140844572206	-1.44728639847599	0.00528059439075031	0.0635228709072649
Merged-chr17-42480349-3	chr17	42479840	42480840	+	850.5277710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355270, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	130973.0	NM_181753	353344.0	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	2.74073508390906	2.67017105238062	2.75640190768354	3.02423523617558	3.09523992387468	3.01672549423472	1.67331797707625	0.0199727428601022	0.161251308309815
Merged-chr2-167746997-2	chr2	167746497	167747497	+	653.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	55820.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.57886346947803	3.68402720921524	3.75436328110659	3.86773546365028	3.51267215370113	3.44028542890672	-0.165502490683326	0.774618982265848	0.944485094095756
Merged-chr3-69062978-4	chr3	69062476	69063476	+	913.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18234.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	3.76374777392561	4.04683069849773	3.80421065277131	3.93025028887392	4.06117336483716	3.87492403562202	0.244822615305861	0.637554093506608	0.89735407749672
Merged-chr4-128619203-4	chr4	128618705	128619705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-586.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	7.43873940073557	7.12188773920964	6.81590768280811	7.31117863754799	7.25290887347992	7.10658343337709	0.101378127657127	0.710864372874654	0.924511716032697
Merged-chr15-8446605-4	chr15	8446119	8447119	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2156.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	6.76462394806647	6.7431016343466	6.73417260422889	6.86228331171656	7.10621455305854	6.55384383862178	0.197308941949809	0.473241658393585	0.820806684174151
Merged-chr10-128373494-4	chr10	128372978	128373978	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3441.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	7.11721021707355	6.8449195741565	6.98277114123103	6.86449781056049	7.25562748367393	7.11886691245172	0.163093581835278	0.532356696497835	0.851971173271146
Merged-chr1-177141660-4	chr1	177141157	177142157	+	905.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	107110.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	4.40460532026657	4.5480421038781	4.37225290418292	4.51775116317873	4.33866650692323	4.52548701007595	0.0214937781832698	0.960672570056614	0.990386809359123
Merged-chr15-6435309-2	chr15	6434809	6435809	+	568.75	f1_balb.idr|f1_c57bl6.idr	exon (NM_023118, exon 12 of 15)	exon (NM_023118, exon 12 of 15)	-10024.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	2.6810541922061	2.39332986833917	2.69876731955002	2.47242971792241	2.5237278877019	2.39295273767029	-0.773544524117824	0.349141291943379	1
Merged-chr13-119329669-4	chr13	119329160	119330160	+	991.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	79351.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	6.37833420000861	6.05836103237301	6.16640716618504	6.47586491410948	6.34032051897738	6.38780153762432	0.315899719960336	0.264738126069005	0.662666328517541
Merged-chr1-119526349-4	chr1	119525840	119526840	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_146103, exon 1 of 1)	5' UTR (NM_146103, exon 1 of 1)	186.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	7.1841280896706	7.28159385385951	7.25850232312993	6.9876793604855	6.66086670057982	6.80343651792529	-0.640546060743034	0.0102410840444982	0.102100914722896
Merged-chr6-136518707-4	chr6	136518204	136519204	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019426)	promoter-TSS (NM_019426)	-147.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	7.34253397338048	7.4037209317293	7.03370045090548	7.27328053374143	7.37546614517542	7.03616346307147	-0.0508115871758203	0.842716032888172	0.963161613177542
Merged-chr7-122258687-4	chr7	122258179	122259179	+	984.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30446.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.7178324765173	6.54843976821153	6.46785094516421	6.64798765416004	6.7088623274983	6.45232325829959	0.044634962265968	0.867810305213747	0.969442397421746
Merged-chr17-83687163-6	chr17	83686612	83687612	+	824.194458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-19051.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	5.04681474291989	5.32884541964006	5.40545168818483	5.20881474239637	5.66567609785458	5.40932088408233	0.366849160742445	0.320071675581589	0.713893850367042
Merged-chr4-115839166-4	chr4	115838683	115839683	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-15.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	7.86292912571002	8.00704190569218	7.72856681781938	7.90514142640128	8.31215424990713	7.78498506731426	0.220537344781659	0.381054385540971	0.762958584368558
Merged-chr18-54986879-4	chr18	54986360	54987360	+	729.633301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	3320.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.48334492346555	7.44660935755704	6.69941112568584	6.99102487223474	6.9460595692592	6.96420037533086	-0.455710484223299	0.12583374458889	0.4745139364226
Merged-chr11-106160205-7	chr11	106159873	106160873	+	944.3618769999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356459)	promoter-TSS (NM_001356459)	-197.0	NM_172397	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	6.46751499784124	6.27489058431282	6.34535034629548	6.41530553567487	6.16119968445228	6.38611560377639	-0.0772316582219972	0.78242017468373	0.946521152264892
Merged-chr11-6274956-4	chr11	6274468	6275468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134020)	promoter-TSS (NM_134020)	-131.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	6.20029245775329	6.12629838357527	6.11315666930439	6.1473582463193	6.37011654175208	5.83332883422075	0.00628042894321084	0.983699981322803	0.996417452412872
Merged-chr14-102983334-4	chr14	102982834	102983834	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-697.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	7.80069905959748	7.82320109394203	7.66538280897816	7.53332743072866	8.06101704126355	7.71287521172266	0.0407072617111882	0.870433382288541	0.970065609722504
Merged-chr6-93122877-3	chr6	93122380	93123380	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	182298.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.27514758714193	3.54350970854407	3.40977705328811	2.99426485101645	2.85636870924291	3.42768116632308	-1.28268058052568	0.0719355870756427	0.352260848010245
Merged-chr2-73007591-4	chr2	73007092	73008092	+	909.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIRb|SINE|MIR	-27146.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	3.40916260755962	3.21569273492398	3.27222399609915	3.35298809191455	3.57205957761666	3.34472520061523	0.507773330349029	0.406934116071736	0.781142268902047
Merged-chr1-143998737-16	chr1	143998100	143999100	+	869.78125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009061)	TTS (NM_009061)	5549.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	3.95519398582747	3.73224826262921	3.45716529965611	3.46013549273753	3.66436828460565	3.80305747678267	-0.301877915802432	0.609120107026577	0.885053989692691
Merged-chr16-31936367-2	chr16	31935867	31936867	+	642.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	2516.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	5.10111896994569	4.93512840515981	5.22186522890546	5.02332412237945	5.17117922253779	5.25408844159783	0.140103702300381	0.703047686955005	0.922108924938678
Merged-chr13-63246664-3	chr13	63246136	63247136	+	971.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	6607.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	5.08981874955041	5.15515727828211	4.7401956553431	4.70442012546928	4.6194231355275	4.29802248999731	-1.03608950478684	0.0173828522593858	0.147170570899367
Merged-chr6-71930254-4	chr6	71929758	71930758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	21205.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	6.57419417073846	6.42427798339485	6.59177427495765	6.42833310756771	6.65977944148428	6.65068604026564	0.0893686060646958	0.737314461013838	0.933692850573981
Merged-chr8-74993684-4	chr8	74993205	74994205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001316753)	promoter-TSS (NM_001316753)	55.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	6.88013308946846	6.8510159260437	6.67251724316268	6.93183635265541	6.74411282424879	6.71488890499256	-0.0135773582147402	0.957637060303699	0.98996830630481
Merged-chr14-120833192-2	chr14	120832692	120833692	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-78002.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	2.87852234304648	2.70313525992696	3.11506695048397	2.85812868943921	2.80246397450978	2.96084978120759	-0.151477527843565	0.833839151795583	0.961104751385188
Merged-chr2-152735189-4	chr2	152734696	152735696	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1055.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	6.8252890108689	6.83848187978899	6.51196415944194	6.84388773963767	7.07117615783386	6.6612501815098	0.213149544308287	0.439071986696535	0.800937323779458
Merged-chr16-21688645-2	chr16	21688145	21689145	+	663.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	6020.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.57493268446631	3.6845164912721	3.72987526146828	3.72890159772268	3.91820824723061	3.40404972528946	0.164506242346031	0.778583136990614	0.945520893795831
Merged-chr9-22071431-4	chr9	22070957	22071957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310759)	promoter-TSS (NM_001310759)	-81.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	7.59983548063019	7.67568789841106	7.56342886310107	7.3879312757692	7.39321495691824	7.45047227017528	-0.303428036055562	0.169085941138261	0.545689142612633
Merged-chr11-54064634-3	chr11	54064148	54065148	+	554.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	4369.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	3.09018446437628	2.64560631525614	2.81648132028082	2.58332150541116	2.40306129013291	2.8295519813225	-1.37528915119655	0.10141185301325	0.424674255939937
Merged-chr17-15498955-2	chr17	15498455	15499455	+	721.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-679.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	6.29074400973887	6.31519941179277	6.47074388334292	6.7485307322421	6.71017273720046	6.78957095938116	0.62990368951891	0.0152300703432243	0.134073602742171
Merged-chr7-88281343-2	chr7	88280843	88281843	+	965.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	3258.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.4735886717489	6.66924908439325	6.39626912847097	7.18353021904169	7.38649699292747	7.00177866253674	1.05296697752205	7.95285166294816e-05	0.00233748103557255
Merged-chr10-94689298-4	chr10	94688774	94689774	+	911.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	484.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	7.16714187569764	7.43253399150668	6.73016388007788	7.05491915280059	6.88135404502457	6.94449592028325	-0.29221872162119	0.304904138899793	0.701230797737315
Merged-chr10-78367172-4	chr10	78366656	78367656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR49|LTR|ERVK	-15456.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	5.45777142687564	5.92989062355132	5.67377524939547	5.49899859633403	5.58494082225267	5.45114977307899	-0.3508055168033	0.30353803723712	0.700099595366068
Merged-chr4-133631170-4	chr4	133630666	133631666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	2263.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	6.73650957991727	6.97563288998015	6.7209575552793	6.32283919898213	6.62274924949353	6.4728952873025	-0.532458439814131	0.0502317674440632	0.285205384202362
Merged-chr2-138257602-3	chr2	138257103	138258103	+	710.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1019.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.35028201789418	4.41868271552083	4.52634840006188	4.16501520936878	4.69323786187119	4.42621204975811	0.0702707579111602	0.880211446400013	0.972457465737931
Merged-chr1-191177373-4	chr1	191176929	191177929	+	773.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007498, exon 2 of 4)	exon (NM_007498, exon 2 of 4)	5904.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	2.99450970225207	2.59630334499006	2.79642429657252	2.51342117758623	2.52079169308776	2.80933247363555	-1.03330312641097	0.196781632670495	0.584746042932789
Merged-chr13-75845997-4	chr13	75845496	75846496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	6110.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.38166949432966	5.35256302221056	5.3920556264401	5.07896271571427	5.2558897095581	5.45468731837354	-0.217997937311011	0.53273762357897	0.851971173271146
Merged-chr5-148551893-4	chr5	148551365	148552365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359201)	promoter-TSS (NM_001359201)	20.0	NM_001359200	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	8.1662290650914	8.60721594506956	8.30674720926812	8.27174434743044	8.77041152652999	8.45023354956599	0.198254152461441	0.4302574439141	0.796158825510326
Merged-chr6-39119320-2	chr6	39118820	39119820	+	913.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172893)	promoter-TSS (NM_172893)	847.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	6.05809921122284	6.29939735133147	6.09378062988656	6.32721590791731	6.35547973807878	6.28174934316406	0.274359577908894	0.3289383825815	0.721082938864213
Merged-chr3-15156926-4	chr3	15156410	15157410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	175392.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.45330196361996	5.44587158307589	5.09976846327761	4.63365412032828	4.77060795634696	5.02443411864486	-1.15024102270283	0.00305372227357032	0.0426502684677447
Merged-chr10-99165105-4	chr10	99164599	99165599	+	880.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	56964.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	4.55145749392971	4.2571812201453	4.39051684329117	4.24577056208337	4.09731794027694	4.53884691360466	-0.292222191854369	0.535675262949461	0.853668337370661
Merged-chr13-67375773-4	chr13	67375276	67376276	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001001186)	promoter-TSS (NM_001001186)	-13.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	6.25833631322852	6.16241393003907	6.18343858296614	6.66076995588502	6.78611010269253	6.60555796382008	0.792711938162732	0.00286239253692982	0.0405955272222357
Merged-chr18-9821413-3	chr18	9820913	9821913	+	809.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	113765.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.97036940715458	3.8439022255426	3.73696368198968	3.15733148014878	2.85237188407331	3.30786608254128	-3.41839695857821	1.09849376399218e-05	0.00043426270248459
Merged-chr14-27186949-4	chr14	27186507	27187507	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289686, intron 2 of 12)	RSINE1|SINE|B4	43014.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.97683071635439	6.73735235054504	6.9198987395637	6.87360595225332	6.73918281167442	6.70886007475673	-0.160183154859184	0.528777579038086	0.850585575598857
Merged-chr6-65146543-4	chr6	65146036	65147036	+	849.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1806.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	4.39196898409011	4.3539412381581	4.51112580856555	4.03452862759107	4.05005814676633	4.04725913358282	-1.02987076042064	0.027058917825357	0.195903457270713
Merged-chr9-118658075-2	chr9	118657575	118658575	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 5 of 27)	B1F2|SINE|Alu	51366.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.53702473619126	6.55523847528767	6.79584110958242	6.58351277270986	6.7471412919183	6.44038363510894	-0.0331362386624903	0.902943409523013	0.977658983455749
Merged-chr14-7774144-3	chr14	7773669	7774669	+	659.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-43788.0	NM_001081427	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	3.11533554912544	3.12061116809604	3.222701682804	3.2732780857889	3.08137759437463	3.12034874255158	0.0407354569499955	0.949207014456351	0.988169196639905
Merged-chr3-79002661-4	chr3	79002169	79003169	+	986.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	142218.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.507784643642	4.78128870964146	4.48261535096008	4.03778237175363	3.89482038724752	4.09234262551297	-1.65036033792903	0.00050382170136769	0.0105543796896784
Merged-chr17-80127479-1	chr17	80126979	80127979	+	926.0	f0_c57.idr	promoter-TSS (NM_176963)	promoter-TSS (NM_176963)	8.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	7.88131247288066	8.2323539350505	7.46035965751513	7.32327923141352	7.70925572574995	7.09786171139396	-0.710526505199183	0.0197645674407255	0.160197295159325
Merged-chr13-55249431-4	chr13	55248925	55249925	+	824.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008739, intron 5 of 22)	intron (NM_008739, intron 5 of 22)	39643.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	4.14506812310449	4.20142118607856	4.10714207122453	4.0050909947685	4.18017767002515	4.12825624332303	-0.128098058705257	0.787063799648217	0.948693859994902
Merged-chr7-28378556-4	chr7	28378063	28379063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011756, intron 1 of 1)	CpG	665.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	7.96118179892376	7.6054000737801	7.72180997641322	7.93959379554876	7.85542228376684	7.73391540296949	0.107363901638376	0.644628025712374	0.900287351502017
Merged-chr18-14682982-5	chr18	14682498	14683498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001161369)	promoter-TSS (NM_001161369)	-84.0	NM_001161371	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	7.81558395399478	8.12510268840395	7.91229631366179	7.90225060194451	7.88361258903172	7.99872662080863	-0.0475666570447414	0.830961584093415	0.960370002015736
Merged-chr17-79176417-2	chr17	79175917	79176917	+	862.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	124511.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	2.7023833356499	2.98462016950973	2.89181523751577	3.07651758134527	3.18622765812429	3.46949967793997	1.75885189813468	0.015922279996905	0.138569299653014
Merged-chr7-116602813-2	chr7	116602313	116603313	+	711.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C-int|LTR|ERVK	98444.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.16931081549716	4.25411204259511	4.08581805774427	3.9842041228025	3.89100700795244	4.20032586744348	-0.446469408377668	0.36080395289936	0.746938274913623
Merged-chr2-90739151-2	chr2	90738651	90739651	+	741.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6219.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	3.60516047883075	3.53638750950182	3.48693163815197	3.59813696479801	3.21568838102119	3.50312110039174	-0.375635445990957	0.531590553548788	0.851732204413779
Merged-chr1-34826090-4	chr1	34825598	34826598	+	930.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	16952.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	5.22986968690666	5.53844146081462	5.52719651053284	5.41102713409781	5.3723329654246	5.41727101835918	-0.0730992174109869	0.830629477326276	0.960367055687527
Merged-chr9-37347773-4	chr9	37347293	37348293	+	909.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081429, exon 2 of 16)	exon (NM_001081429, exon 2 of 16)	599.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	7.07447038282399	7.48496736786084	6.83669961766143	7.40307663743923	7.58663587437356	7.51737200933665	0.491704578008296	0.0739217001983325	0.357442865533638
Merged-chr16-62856496-4	chr16	62855995	62856995	+	805.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	2188.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	4.16308200552249	4.21378590036965	4.48317850891504	4.34339297332403	4.37794652542985	4.25079572006845	0.121097861679742	0.791870203319459	0.949833297935787
Merged-chr10-59741707-4	chr10	59741171	59742171	+	925.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359267, intron 4 of 11)	intron (NM_001359267, intron 4 of 11)	39108.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	4.87122956282715	4.59355476061165	5.18278780179484	4.77191891999512	4.82191117217509	5.09175563893136	0.0059916354285034	0.988660880233119	0.997426973334006
Merged-chr2-160673626-3	chr2	160673138	160674138	+	644.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009408, intron 3 of 20)	MTD|LTR|ERVL-MaLR	27741.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	2.92166387688141	3.19531666236219	2.940338196477	3.01296900164633	3.00870575206193	3.074089157702	0.00192100392921796	0.997745642883914	0.999535504317229
Merged-chr10-82629277-4	chr10	82628766	82629766	+	964.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-572.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	6.60233009245769	6.59372453998282	6.50446221627433	7.00345573733934	7.065506065198	6.87501166338508	0.651100741654609	0.00934978735761329	0.0960228470071941
Merged-chr10-127579829-6	chr10	127579204	127580204	+	841.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	41444.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.0932193227596	3.55548444415188	3.99912114607402	3.64930720477054	3.45478023718724	4.27814913469037	-0.185539945981357	0.769576559271517	0.943146422326599
Merged-chr5-121196964-4	chr5	121196454	121197454	+	993.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5557.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	5.35492993796801	5.58935390596292	5.21163438891767	5.55789478760893	5.49910340854636	5.9539832803116	0.510335656233075	0.155280031449936	0.524873107662021
Merged-chr4-53161932-2	chr4	53161432	53162432	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2037.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	2.83372045950523	2.72879585862547	2.86506734232207	2.8662885582071	2.75660390627156	2.68829809358109	-0.176612000770032	0.806986387339203	0.954399610026228
Merged-chr18-32389836-4	chr18	32389326	32390326	+	980.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11542.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	5.22822226236338	5.01131735672968	5.19006935838295	4.72484038033383	4.8274525200994	5.05891312635204	-0.593118662210369	0.121217389597497	0.465641316357903
Merged-chr10-40882374-6	chr10	40881913	40882913	+	939.154785	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	730.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	6.96595584058932	7.25542208553642	7.10059549888005	7.29797912392587	7.36285503962232	7.06653675335144	0.21197800631897	0.396467699070548	0.773652887901204
Merged-chr7-66137814-3	chr7	66137292	66138292	+	721.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	28277.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	3.90594730915772	3.90341176520917	3.94933482764796	4.06780430005578	3.85429000559011	4.1577826344026	0.319422446225605	0.525082141094109	0.848874487604023
Merged-chr14-58323327-4	chr14	58322817	58323817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	250631.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.91494530178522	4.63474724889307	5.33382779064173	5.10037351676312	5.106574224166	4.94955095868128	0.166414960023641	0.689237500916087	0.917319650405699
Merged-chr16-11346377-4	chr16	11345864	11346864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	23460.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	5.85445066170352	5.80324885268268	5.70864752725441	5.47273043955137	5.51301476481334	5.66459791864991	-0.458065554920909	0.145583084168638	0.508750422332281
Merged-chr4-35097066-4	chr4	35096556	35097556	+	996.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-54999.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	5.91201720688762	5.48772601412956	5.14118038162224	4.66531194930248	4.65672754956872	4.64358278303679	-1.91343922963242	3.98583185831455e-06	0.000181528788870628
Merged-chr6-29485279-4	chr6	29484770	29485770	+	973.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029985, intron 32 of 37)	intron (NM_001029985, intron 32 of 37)	13833.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	6.17340020848709	6.54079274003551	6.34193571283605	6.48216594318718	6.50188324171549	5.69556228836038	-0.116909863278577	0.738337971263243	0.934032187674406
Merged-chr7-41499881-2	chr7	41499381	41500381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	9.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	6.0818292775409	6.00847832609526	6.09902170698903	6.34940198390198	6.30558556922132	6.04652333532309	0.317529401177226	0.268869169035847	0.666033516437475
Merged-chr18-84683754-4	chr18	84683265	84684265	+	800.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023149, intron 1 of 11)	B2_Mm2|SINE|B2	-1706.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	4.76820156120086	4.73600956666585	4.65544945860541	4.6732027373156	4.78151171401119	4.94649075133599	0.172010934328017	0.666378308694334	0.908149841255908
Merged-chr16-31927718-2	chr16	31927218	31928218	+	849.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6133.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	5.22622935507759	5.01382201043	4.50261208754703	5.53013845171265	5.68427851469783	5.37412281136726	1.15271004381686	0.00645915239207317	0.0737146004991941
Merged-chr14-27354429-1	chr14	27353929	27354929	+	1000.0	f1_balb.idr	intron (NM_001289687, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	-6960.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.38341743721714	3.86691815875162	4.41280339964477	4.74432916442314	4.57401232493489	4.30041896149482	0.808953978101268	0.106092633541358	0.43477914951287
Merged-chr10-116726229-4	chr10	116725727	116726727	+	982.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045345, intron 1 of 2)	intron (NR_045345, intron 1 of 2)	2950.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	4.13585109552719	3.87693928469896	3.96681672130594	4.56442474109477	4.57362219348459	4.73730279046072	1.67286276941091	0.000394888293268967	0.00869485713318979
Merged-chr7-97843357-4	chr7	97842854	97843854	+	911.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357363, intron 1 of 14)	intron (NM_001357363, intron 1 of 14)	415.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	5.1257343184052	4.81076610626431	4.87961568605094	5.10279803652504	5.54648122852374	5.35602883569584	0.832835473786642	0.0305305272489412	0.211276123696765
Merged-chr17-28433236-4	chr17	28432734	28433734	+	938.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010220, intron 3 of 10)	B4A|SINE|B4	52915.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	4.81673952593688	4.77034270291463	4.86908538655646	4.78883272812337	5.1235603150828	5.13973903293041	0.463735043410159	0.233240485452022	0.629682827928185
Merged-chr10-127585221-2	chr10	127584721	127585721	+	877.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	35927.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	3.96890083953579	3.66172285553515	4.36919283670641	3.77232063618804	3.73212411619093	4.23816947830732	-0.287389801291206	0.621652412517155	0.890838690442753
Merged-chr10-127615235-2	chr10	127614714	127615714	+	613.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5934.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	5.13922596831053	5.07848478807762	5.81934173960083	5.40850335837193	5.24375433120149	5.07538006199856	-0.249172077435316	0.543932566697646	0.857551302506722
Merged-chr10-21976552-4	chr10	21976057	21977057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161845, intron 3 of 13)	intron (NM_001161845, intron 3 of 13)	-2115.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.99265925206215	5.76413500675322	5.94661897056677	5.8405359408947	5.65106017404923	5.71067671380422	-0.302091942167212	0.328948232205802	0.721082938864213
Merged-chr8-69925448-2	chr8	69924948	69925948	+	657.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-22890.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	2.47096452293941	2.43406087817892	2.66957315864736	2.43358359085758	2.32356445821939	2.9696370658668	0.428796327186299	0.618159230767735	0.889154219224894
Merged-chr3-87362434-3	chr3	87361956	87362956	+	802.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009690, intron 2 of 5)	Lx8|LINE|L1	4575.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	5.27540951200988	5.15122997811358	5.67449208756992	6.23384566697791	6.16727918750404	5.73742343683839	1.27914212882296	0.000274324937693004	0.00646446599137907
Merged-chr11-87430331-2	chr11	87429831	87430831	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199293, intron 1 of 30)	B3|SINE|B2	2740.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	2.46389797433102	2.45593346644366	2.57572335370251	2.35715693907378	2.38068955352208	2.4618782071769	-0.619850119128185	0.440506398044929	1
Merged-chr15-38374897-3	chr15	38374403	38375403	+	768.599976	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-74192.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.83456058970646	3.69094325069306	3.7879707437825	3.31625096079787	3.515172835643	3.95030001205048	-0.532013059103201	0.3763440131469	0.759174422146618
Merged-chr18-12232752-2	chr18	12232229	12233229	+	796.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_008720, intron 1 of 24)	RMER1C|Other|Other	3657.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	2.59642189802175	2.66787239342426	2.6803246503713	2.60179820426604	2.45124271010628	2.43080735496306	-0.888149503745307	0.261143126060258	1
Merged-chr2-6479779-2	chr2	6479279	6480279	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	127043.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.13454281984212	4.10925111956725	4.20254530108741	3.95830056571157	3.54364237466153	4.09147296731819	-0.820613134570703	0.127514598923066	0.47729351089476
Merged-chr4-121004849-4	chr4	121004328	121005328	+	962.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	12419.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	5.64586155516176	5.24608971284757	5.28403430407045	6.09713839778536	6.16827414913823	5.99421618449229	1.22826818310379	0.000207075519827148	0.0051572403034353
Merged-chr19-43531077-2	chr19	43530577	43531577	+	804.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6472.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	3.75509525292332	3.99935721025197	3.90765785165578	3.61665446187714	3.58291951881097	3.83009920782535	-0.718508101561109	0.183374104100089	0.566491618839527
Merged-chr7-81864731-1	chr7	81864231	81865231	+	544.0	f1_c57bl6.idr	intron (NM_001291282, intron 2 of 9)	A-rich|Low_complexity|Low_complexity	2044.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	4.41548351106005	4.17496997777559	4.31937136958543	4.00455014424919	4.23260826048677	4.29934546473663	-0.334830004250981	0.478013385927481	0.823557599309546
Merged-chr4-139214124-4	chr4	139213622	139214622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	20011.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.97846469452261	6.92681200962618	6.58188456670373	6.97588803695587	7.24633820092317	6.54835414561199	0.184297439568863	0.54217908440959	0.857038265460081
Merged-chr11-118455716-5	chr11	118455259	118456259	+	886.8599849999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045902)	promoter-TSS (NR_045902)	-764.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	7.3333580401447	7.41066418676999	7.50452691676474	7.10645914602479	7.11279950661276	7.06940003523795	-0.474504781866892	0.040061093479193	0.24915702786975
Merged-chr2-59438094-4	chr2	59437606	59438606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46547.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	6.47587204699194	6.44244839592813	5.99966761667837	6.20249133752088	6.2979451347481	5.9871849540221	-0.261961792747475	0.393684191265726	0.771858486966036
Merged-chr17-33761257-2	chr17	33760757	33761757	+	773.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	-771.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	6.09399293636386	6.43458584120025	6.47837217212901	6.11065062697141	6.52218818458913	6.0322154243497	-0.146517295510276	0.643498849618	0.899827783867146
Merged-chr17-28736780-2	chr17	28736280	28737280	+	912.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001168508, intron 8 of 11)	intron (NM_001168508, intron 8 of 11)	-32537.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	4.78324783771916	4.74901791593798	5.07527586181673	4.58306809362663	4.43174592557683	4.91032423857467	-0.521990273348968	0.223254658936949	0.618076123752226
Merged-chr6-116681670-4	chr6	116681171	116682171	+	952.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7835.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	6.0758561950091	6.06953575306376	5.89349865361006	6.2640012796029	6.27926547719629	6.0754353726271	0.328608764814548	0.254728232462646	0.651754308411513
Merged-chr8-4312271-3	chr8	4311768	4312768	+	877.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010485, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	12832.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	3.55236899142819	3.43509524399017	3.51163808687161	3.54995605895547	3.25903186078108	3.831496245159	0.210988061796112	0.729828597707828	0.930635866770147
Merged-chr10-84443552-4	chr10	84443050	84444050	+	898.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3079.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.64067799991656	3.45291684726362	3.55306336938233	3.23838605902159	3.23080948750906	3.518166019763	-0.856941616672057	0.156921213290169	0.527772850260646
Merged-chr7-128333115-4	chr7	128332608	128333608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34977.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	5.60247870226891	5.31891366008858	5.47805661362146	5.38395275568825	5.46031932282692	5.64940572083457	0.0479682179146063	0.887449039600546	0.973836995667151
Merged-chr11-120938970-4	chr11	120938444	120939444	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6072.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	3.81990643025111	3.4982933494124	3.49558959195729	3.58619378899851	3.53345436635603	3.51082226162517	-0.262540731429844	0.649368685632552	0.902160587683553
Merged-chr7-126596091-3	chr7	126595566	126596566	+	957.2222289999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1156.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	3.12242431829272	2.98269863705381	2.92317232052476	3.29374231193788	2.95283693578577	3.23782229307862	0.662730143997194	0.332496829773649	0.723636403333698
Merged-chr9-53385762-2	chr9	53385262	53386262	+	796.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_212445, intron 1 of 7)	RLTR28|LTR|ERVL	1739.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	5.79673825885203	5.68507043389629	5.70711327882633	5.89517321644376	5.70168596709475	5.84547514519703	0.144801500907584	0.638085317200553	0.897380718500389
Merged-chr15-8994131-2	chr15	8993631	8994631	+	868.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	Lx7|LINE|L1	26182.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	5.28734728815626	5.74685172870149	5.61121871927747	5.23007534172247	5.66172514081572	5.93720626002364	0.136514880733154	0.719009619516226	0.927633547003347
Merged-chr8-68175284-4	chr8	68174799	68175799	+	815.700012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR25A|LTR|ERVK	-101229.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	4.13271873169419	3.53000098511094	3.91451566839952	3.81103417347613	3.4595053123391	3.88679822050546	-0.499054365186737	0.401798422529963	0.777753227258936
Merged-chr7-24389645-4	chr7	24389131	24390131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9997.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.85768766858795	4.89740293572589	4.83783747663815	5.95435317348241	5.81281219665382	5.93243906005857	2.02584364328976	4.83153037573962e-09	4.73524121913478e-07
Merged-chr6-124915246-2	chr6	124914746	124915746	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026988, intron 1 of 4)	intron (NM_026988, intron 1 of 4)	-1617.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	2.88317026443504	2.77706581484509	2.95084793089948	2.90706370400719	2.93076222370071	2.90337258641131	0.225515407443333	0.744319149197215	0.935916036002084
Merged-chr4-155668701-2	chr4	155668201	155669201	+	914.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001256107, exon 1 of 20)	5' UTR (NM_001256107, exon 1 of 20)	553.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	6.30883213970702	6.75077947972947	6.37676148778301	6.63453986450536	6.77947703144139	6.4751338590605	0.226017941404887	0.436215198671472	0.799470052648526
Merged-chr2-156181518-4	chr2	156181027	156182027	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1D9|SINE|Alu	-1289.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	6.98481929379376	6.95019520888404	6.78669558435717	6.52785766012795	6.66608710909235	6.26231157145504	-0.635424281516389	0.0196388035748279	0.159456046824188
Merged-chr17-21010048-2	chr17	21009548	21010548	+	613.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145483, intron 1 of 4)	intron (NM_145483, intron 1 of 4)	1107.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	5.69899319740015	6.17282163886603	5.97488978995308	6.30860588936447	5.96657954552939	6.32735051876613	0.406543077293738	0.20744812258423	0.598230518610544
Merged-chr5-18014390-4	chr5	18013879	18014879	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51809.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.55363332875391	6.60234279190402	6.58235557062242	6.6112945940666	6.88015563955635	6.70735730101571	0.259479053798345	0.31773248025138	0.711518266188251
Merged-chr5-135471230-1	chr5	135470730	135471730	+	544.0	f1_c57bl6.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73892.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	7.11604372312433	7.10672242426996	7.06315701992095	6.87008312574935	7.0461284459971	6.60415728469348	-0.351613825026875	0.175893625736527	0.555921936046072
Merged-chr9-54566961-4	chr9	54566461	54567461	+	765.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6882.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	4.20276147313577	4.41995589059462	4.37331187563789	4.1898508103915	3.96400982883536	4.39819465549338	-0.410260365315025	0.392517527987393	0.771172125304963
Merged-chr4-126130986-2	chr4	126130486	126131486	+	559.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-17017.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	5.24360854056757	5.06238201705189	5.69142422667479	5.18739480422583	5.26928142648985	5.09377809721941	-0.31270963160781	0.418331999328549	0.788588731807313
Merged-chr13-113795243-4	chr13	113794709	113795709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	701.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	6.64119691798948	6.61237374693447	6.2186852317151	6.0756071107492	6.09776792655483	5.7301859734098	-0.871543713712306	0.00489269823478577	0.0603378453811147
Merged-chr1-75142692-4	chr1	75142128	75143128	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305232)	promoter-TSS (NM_001305232)	83.0	NM_026977	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	7.88197473368339	8.29622845167461	7.91011659473958	8.05102703960952	8.22416533452194	7.82529788915301	0.00217562274860036	0.993033107275267	0.998646946749805
Merged-chr9-45909510-2	chr9	45909010	45910010	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001281934, exon 3 of 17)	exon (NM_001281934, exon 3 of 17)	-2599.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	3.33714450251619	3.03255237457675	3.57668728681082	3.25007105572398	3.27981721539423	3.54652365708465	0.126575683886234	0.847287638091558	0.964223228391788
Merged-chr10-61451726-4	chr10	61451232	61452232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	937.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	7.25286806053682	7.56583263112749	7.29581156084708	7.36528031464974	7.7433331118832	7.30666498505992	0.166169073546775	0.524025060478238	0.848523502681091
Merged-chr4-126678193-2	chr4	126677693	126678693	+	839.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011970, intron 1 of 5)	intron (NM_011970, intron 1 of 5)	550.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	7.6970503269027	8.22435864379588	7.85908987812474	7.80983892650605	8.28203708452853	7.79752225724239	0.0581179151313339	0.831073116662391	0.96040466966768
Merged-chr19-41973976-2	chr19	41973478	41974478	+	749.75	f0_balb.idr|f0_c57.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	7158.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	7.2310183639595	7.13704751530822	6.63513346517635	7.30621848062304	7.44959266889518	6.60134007687501	0.218989363479243	0.507951610092813	0.839536738689869
Merged-chr19-34607483-2	chr19	34606983	34607983	+	793.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-474.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	6.9095531100533	7.00360735051953	7.08399032614707	7.78091574171512	8.02946900132751	7.75092059276118	1.277100275698	5.41998794024872e-08	4.16039074291711e-06
Merged-chr5-67843946-2	chr5	67843446	67844446	+	974.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	3485.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	3.4509684625198	3.3946646160789	3.66053759952178	3.73123548754451	3.61774240301032	3.62651142923494	0.570382778867879	0.312784452685603	0.707413942140844
Merged-chr16-30008702-4	chr16	30008212	30009212	+	998.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	45.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	6.32710435458504	5.94548754442999	6.48209577159882	6.49678712869581	6.19242054912267	6.0428769513644	-0.0011495557481306	0.997133615599672	0.999338276935267
Merged-chr7-30654658-2	chr7	30654155	30655155	+	922.2999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_027999, intron 17 of 18)	intron (NM_027999, intron 17 of 18)	-4427.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	3.52440762747181	3.46319812873154	3.90766960224427	3.38491346425897	3.55951369232772	4.06076225348054	0.176962954107222	0.777354359546903	0.945092074067485
Merged-chr2-91135859-2	chr2	91135359	91136359	+	792.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008653, exon 30 of 32)	exon (NM_008653, exon 30 of 32)	17715.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	2.29400923111329	2.52922036850548	2.75009843451181	2.60984913856701	2.59161982915557	2.70361318234996	0.569753909738447	0.491819322300772	1
Merged-chr14-75017517-4	chr14	75016986	75017986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	1459.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	5.48543700285796	5.20022398764993	5.5709609121437	6.09980910136033	6.11955243731801	5.5153476063114	0.971595783779744	0.00643336206471218	0.0735211084577079
Merged-chr9-65031600-4	chr9	65031089	65032089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-869.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	6.0664442532912	6.2996595656805	6.32705814602197	6.18459852249817	6.46745094058233	6.1854011426095	0.106397069217931	0.715385254492527	0.926392907650078
Merged-chr9-95641333-4	chr9	95640833	95641833	+	971.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	3705.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	6.10758649321074	5.8613735842788	5.96768721795841	6.10868806969454	6.14435533954601	5.85637824174125	0.118932650700217	0.693433514290283	0.918953933419669
Merged-chr16-36627036-4	chr16	36626543	36627543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	39034.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	6.58537519476829	6.5417611968996	6.3276886232625	6.35869105440755	6.41826515437082	6.38769673869382	-0.175987143587178	0.513514591434241	0.842605445159935
Merged-chr2-126497002-4	chr2	126496512	126497512	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	2835.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	5.65150926808333	5.44283707073529	5.72996886997905	5.31219523156546	5.06893753133119	5.58858653085663	-0.546419706343832	0.128773986487521	0.479799601167289
Merged-chr17-35186165-7	chr17	35185661	35186661	+	990.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010734, intron 3 of 3)	intron (NM_010734, intron 3 of 3)	2279.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	6.60419049593409	6.22223141258207	6.38013018949816	6.4422384491201	6.55198253010822	6.61613861593369	0.199148770554078	0.476809091181298	0.822931091639117
Merged-chr8-122405263-4	chr8	122404755	122405755	+	896.275024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001029993, intron 9 of 18)	intron (NM_001029993, intron 9 of 18)	-16765.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	3.4739416057687	3.62813773457838	3.27982051183458	3.65835930228822	3.54244980275153	3.58600450203122	0.425143128076458	0.472361327130347	0.820550293768681
Merged-chr11-45881235-2	chr11	45880735	45881735	+	707.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	29271.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	3.16440325926056	3.27846405034609	3.46599716513751	3.28000272081855	3.25207658721385	3.14525633439627	-0.297005979116975	0.637541105199983	0.89735407749672
Merged-chr11-49983077-4	chr11	49982595	49983595	+	845.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4b|LINE|L1	-42236.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	4.08448931554147	3.70927482097085	4.01510734722707	4.43118928665504	4.02468528644963	4.13320881189699	0.757110636639288	0.145483679517039	0.508671180619635
Merged-chr1-182282753-4	chr1	182282247	182283247	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	54.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	8.077457051655	7.95174396386129	7.89514285367394	7.82746966409227	7.73844319826478	7.52744511167442	-0.38690906016712	0.0858653219269125	0.388065922920783
Merged-chr3-20017742-4	chr3	20017236	20018236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 8 of 16)	intron (NM_080634, intron 8 of 16)	17574.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.41249038072516	6.24887158760305	6.22217806653216	6.48769944913563	6.35731516585881	6.26171189096751	0.122505259845956	0.657918895539756	0.904859102731141
Merged-chr11-50154976-3	chr11	50154495	50155495	+	642.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029745, intron 10 of 20)	intron (NM_029745, intron 10 of 20)	-19856.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	5.67127484326775	5.61185964802171	4.87702707299362	4.65344757508501	4.80572340114149	4.37936481761137	-1.71395697745797	0.000210134794757069	0.00521004052507335
Merged-chr9-50553142-2	chr9	50552642	50553642	+	878.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	520.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	6.49017607196288	6.51379534702536	6.57014853008846	6.83301148983826	6.97255844704989	6.89389854833179	0.598909485446131	0.016898919475012	0.144277169267063
Merged-chr15-64096588-2	chr15	64096088	64097088	+	609.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-36140.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.83387250066782	4.31930865655503	4.39757773011347	4.52837846969187	4.68606927271366	4.59646115701486	0.151479278085302	0.738015849404784	0.933858424870961
Merged-chr4-59865675-2	chr4	59865175	59866175	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172468, intron 2 of 8)	B1_Mur4|SINE|Alu	49381.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	4.60516491825457	5.20248628657494	5.26477828682405	4.56371904053187	4.19393500701284	4.8535009310586	-1.13443837648918	0.017993935590679	0.150749032685181
Merged-chr13-111895035-3	chr13	111894554	111895554	+	791.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	27118.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.48486466023271	4.65996602720566	4.53804011977598	4.27168085286065	4.26815972871596	4.10136951613675	-0.889100669102944	0.0482331324946777	0.278450160304365
Merged-chr6-34005889-3	chr6	34005391	34006391	+	770.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23557.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	2.95118368248677	3.09672184556634	3.11295442196982	2.96619434669516	3.05068272211421	2.94770225395668	-0.283312961218937	0.672891436135872	0.910998220273246
Merged-chr1-13658550-1	chr1	13658050	13659050	+	546.0	f1_c57bl6.idr	intron (NM_145381, intron 1 of 6)	L2c|LINE|L2	1959.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	5.25929007035095	5.00576918902152	5.13753156889837	4.86897390337084	4.69183480294769	4.84907549809578	-0.739126345533619	0.0530594257914562	0.295199448710188
Merged-chr9-107709950-4	chr9	107709440	107710440	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011349, intron 1 of 17)	CpG	535.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	3.16119243123558	3.10385893490702	3.11963805023642	3.4726503032966	2.71768547834002	3.00790728562508	-0.0751273196268875	0.921531117098515	0.982542868764899
Merged-chr13-119616727-2	chr13	119616227	119617227	+	975.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7092.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.30559801488462	4.61650905910311	4.11845994718044	3.82157120371215	3.97881334906444	4.45271202671721	-0.720352832340474	0.177281944588492	0.55822004025504
Merged-chr2-145871782-1	chr2	145871282	145872282	+	911.6666869999999	f0_balb.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-31459.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	3.3005622638984	3.344651705019	3.5345485697447	2.97462131466118	3.22177248943788	3.34360322748847	-0.837261702131859	0.198650689265443	0.58708316648549
Merged-chr16-8862483-4	chr16	8861974	8862974	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	32374.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	4.31398978114888	4.30119146437729	4.51129869121436	4.10427123798607	3.90294472060709	4.24639499664888	-0.810923789339576	0.0900237391914506	0.39888680391087
Merged-chr3-36532167-4	chr3	36531682	36532682	+	885.087524	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10737.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	5.50890582317237	6.0096690028083	5.93093784810216	5.75330963879301	6.2767854459064	5.79462138901534	0.25126560893061	0.478200715700102	0.823624523176113
Merged-chr3-30601360-4	chr3	30600860	30601860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030557)	promoter-TSS (NM_030557)	-727.0	NM_001289623	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	6.37233697641135	6.55125769091166	6.39967822474541	6.78678025746962	7.15067269907281	6.98689336333947	0.848643413353593	0.00151590959704053	0.0248985009377317
Merged-chr12-102430124-5	chr12	102429694	102430694	+	949.048767	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011175, intron 1 of 13)	CT-rich|Low_complexity|Low_complexity	9619.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.46519241877217	6.5217336233162	6.88967704349771	5.83006802576986	6.01008209901729	6.1656326941457	-1.03810109422927	0.000561374867475952	0.0115024766723884
Merged-chr6-146209192-4	chr6	146208680	146209680	+	907.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275058.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	3.7713550998495	3.53960016857647	3.59596976681588	3.37671989262384	3.48330177642969	3.61340593119723	-0.537989458605284	0.349167086883077	0.737209301320654
Merged-chr17-27029282-2	chr17	27028782	27029782	+	637.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	23.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	3.53007685252392	3.23886721878137	3.54168541929118	3.56430581833139	3.2616150767081	3.8089219568189	0.416634178124499	0.506562172873929	0.838470324751826
Merged-chr16-97462996-4	chr16	97462496	97463496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-90.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	6.44809405184606	6.35831165797778	6.39658891096365	6.42257495102229	6.65770384766698	6.77145306318374	0.354780828900994	0.190487723813224	0.576870815367985
Merged-chr12-85192854-4	chr12	85192361	85193361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15548.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	3.13648918395705	2.92001573413467	3.06291450894861	2.71699192652353	2.66457544114789	2.83735159338887	-1.59170688919454	0.0305765382446704	0.211471415033043
Merged-chr10-37138933-4	chr10	37138405	37139405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	21.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	7.36511812958458	7.74440174403289	7.7922230300158	7.35623318227548	7.61488248177929	7.63504068207434	-0.150664081836697	0.549151298701106	0.860215389264136
Merged-chr6-122599898-4	chr6	122599416	122600416	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134391, intron 2 of 7)	RSINE1|SINE|B4	2528.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	6.86949307243427	6.692302945432	6.63392701084214	7.34775024175309	7.74227594277415	7.35456929267688	1.14779753641326	1.18724207105943e-05	0.000463575965503112
Merged-chr2-133458900-4	chr2	133458388	133459388	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-93271.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	5.95484586519648	5.54687736958752	5.73637472442843	5.5104989627789	5.53167435068497	5.46382786300723	-0.470255793328503	0.156810465834246	0.527644132904867
Merged-chr18-23806754-2	chr18	23806254	23807254	+	677.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	B3|SINE|B2	2784.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	7.24839099517799	7.15729130587854	7.05201265991872	7.28463230424662	7.57821954967467	7.22508000146714	0.329925221702027	0.183547471710041	0.566825684946619
Merged-chr7-83656799-2	chr7	83656256	83657256	+	671.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-1261.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	3.76421264259804	3.50446325349053	3.73568566988209	3.40729914913644	3.27808321079944	3.60284351485095	-0.889894739414039	0.132743712002623	0.487573398773929
Merged-chr14-55735996-4	chr14	55735488	55736488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9696.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	7.8713549959999	7.58691204156308	7.55941060631057	7.899890293372	8.34861253708269	7.66532923748615	0.471082339093391	0.0840561186869868	0.383661081936741
Merged-chr9-21139141-2	chr9	21138641	21139641	+	582.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_016742, exon 8 of 8)	3' UTR (NM_016742, exon 8 of 8)	-7866.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	2.22868913572256	2.15882774312304	2.33086224884927	2.00514791006837	2.05740917080209	2.21326307814937	-1.10210921261352	0.2281292431445	1
Merged-chr2-170239256-5	chr2	170238798	170239798	+	868.2999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-96623.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.83244183178133	4.61441341307825	4.86210050172445	4.65859470272138	4.7416810477321	4.99547536247735	0.0657692750998218	0.871596037583225	0.970227816594767
Merged-chr9-85577970-4	chr9	85577453	85578453	+	852.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L3|LINE|CR1	171381.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.87909258402007	4.88358202792527	4.93109087027905	4.77198624476989	4.54655340432416	5.02929696923113	-0.25688141343445	0.527759281024145	0.850108008834301
Merged-chr3-95655751-4	chr3	95655266	95656266	+	963.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2955.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	4.85369005081297	4.16643269106919	4.20903239810554	5.0692652712368	4.40880517789769	4.80772680674537	0.776212935858312	0.136595732362493	0.493740502092718
Merged-chr1-180421389-4	chr1	180420847	180421847	+	712.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081175, intron 7 of 7)	intron (NM_001081175, intron 7 of 7)	62157.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	2.79490811266972	2.55880281343046	2.66658041044019	2.70757859211996	2.54712546203134	2.92094891320507	0.271383001548074	0.724907058980587	0.929475409375828
Merged-chr1-36470319-2	chr1	36469819	36470819	+	756.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1278.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	3.32939654598458	3.60659976333264	3.57735493981549	3.16956365487293	3.43833738923251	3.32116891721206	-0.723460087386164	0.244905078688261	0.642344989479084
Merged-chr2-180256421-3	chr2	180255909	180256909	+	954.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-970.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	6.6423795931946	7.01034316314561	7.14912983856377	6.6915967977451	6.77884775630705	6.81353745749163	-0.284824289973903	0.296042811130193	0.692798127700561
Merged-chr13-29985659-1	chr13	29985159	29986159	+	549.0	f0_balb.idr	exon (NM_010093, exon 1 of 7)	exon (NM_010093, exon 1 of 7)	404.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	5.8318242178016	5.75436712647793	6.22810502041385	6.24844014684588	6.25903387754877	6.1028470793969	0.462025052204997	0.134037690420584	0.489430895003259
Merged-chr17-57289901-2	chr17	57289401	57290401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	10801.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.72654030413811	6.78618719448325	7.13428169714247	6.64496056744655	6.58129391302273	6.78611847660514	-0.340558526772613	0.207700835286945	0.598606598405185
Merged-chr13-45694384-2	chr13	45693884	45694884	+	556.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001199304, intron 5 of 6)	RSINE1|SINE|B4	186940.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.79947993675989	3.68160957233662	3.58828942232841	3.79956269955191	3.80280827052717	3.96802777091771	0.508911027208241	0.341041394939245	0.730659982236591
Merged-chr15-88868013-4	chr15	88867531	88868531	+	952.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	5837.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	3.55119928940279	3.51958959988776	3.37827793583541	3.29274855186846	2.85306555563902	3.09083395915904	-1.70174835720064	0.0146226039824493	0.130283502748864
Merged-chr11-114669130-4	chr11	114668617	114669617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048058, intron 2 of 3)	CpG-2790	336.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	7.85669713130758	7.60804331997614	7.4138511962755	7.6775651083026	7.74345296531697	7.70811224330831	0.0924160221571604	0.697766452439253	0.920111182740464
Merged-chr6-3427287-3	chr6	3426782	3427782	+	930.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27711.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	3.81449204374954	3.74849044394467	4.27340661110117	4.1494188281561	3.95614227529256	4.33967394087626	0.567740224177326	0.287404087278979	0.684655137401853
Merged-chr2-158175193-4	chr2	158174711	158175711	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16797.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	8.35197819392011	8.36175262577593	7.92293388100924	8.02558840201444	8.31007341696019	7.76335920994878	-0.243272289855719	0.35121556813223	0.739086949987195
Merged-chr19-12006202-6	chr19	12005677	12006677	+	996.638916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30563.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	6.49469969287569	6.5301492345736	6.42370669787466	6.63214009855286	6.90242686469686	6.46457468994185	0.327058249475911	0.236336669328988	0.632720263621021
Merged-chr14-75751244-4	chr14	75750744	75751744	+	871.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177381, intron 1 of 22)	intron (NM_177381, intron 1 of 22)	3249.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	3.3950179858141	3.53740184719703	3.51635315977699	3.29804900282485	3.31875057773379	3.68710048115432	-0.170044748114433	0.778148979833352	0.945414788336538
Merged-chr7-19320149-4	chr7	19319639	19320639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10094.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	7.49691208458679	6.92626554203336	6.3598004989249	7.11440057801763	6.99214727119154	6.62096532145525	-0.140967430147365	0.694656232535775	0.919217788511748
Merged-chr6-55203783-4	chr6	55203278	55204278	+	947.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001142781, intron 1 of 17)	intron (NM_001142781, intron 1 of 17)	395.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	4.26965715961225	4.61989365553771	3.96359184379519	4.47515730438838	4.10710365877286	4.3362156959525	-0.0281326078466926	0.956388828353096	0.989887454023164
Merged-chr5-140617956-4	chr5	140617436	140618436	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	10595.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	7.66216105888313	7.6093767923415	7.71173455618108	7.53816773960525	7.73146981618994	7.26596797943033	-0.178874509434617	0.461286138160815	0.814992635038861
Merged-chr7-121333157-4	chr7	121332642	121333642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59154.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	5.41289818913673	4.96140849325994	5.67976679999282	5.055240142517	5.14590431522689	5.40333071116229	-0.342114527098318	0.392414713813036	0.771172125304963
Merged-chr1-156425843-3	chr1	156425353	156426353	+	778.366638	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4938.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	2.55490350899409	2.55641396888371	3.07551289840642	2.56082343561761	2.60417012185709	2.87253588189135	-0.333757805432458	0.680144912714731	0.914139397449033
Merged-chr8-117325537-2	chr8	117325037	117326037	+	577.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	CT-rich|Low_complexity|Low_complexity	-23633.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.74620037725966	3.72488904055627	4.19684944708083	3.60464996493739	3.52205140581592	3.82164713248216	-0.817895888591645	0.151045899299742	0.518341534578833
Merged-chr15-80264362-4	chr15	80263866	80264866	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175109)	promoter-TSS (NM_175109)	-60.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	5.91905241184466	5.91068222890063	6.38192925139931	5.94178723571471	5.9282512947103	6.0089460722404	-0.205519904777808	0.513674844879199	0.842716032340123
Merged-chr9-118662696-4	chr9	118662205	118663205	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-48987.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	8.42045244885107	8.22875296955678	8.03452778877475	8.43165534805916	8.59891546568024	7.98961997577137	0.18323437210999	0.475513689689415	0.822025286013272
Merged-chr18-67249185-4	chr18	67248681	67249681	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3351.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	6.56498108358688	6.37114234835488	6.29217277338299	6.81870529836995	7.0440522389838	6.79708176195174	0.752869179461826	0.00503907810218319	0.0615560823841689
Merged-chr19-7215652-2	chr19	7215152	7216152	+	737.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_007750, intron 1 of 1)	intron (NM_007750, intron 1 of 1)	1964.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	2.81632978813639	2.92922128609123	3.04844278627048	2.98730525895285	2.7283378922675	3.12009367413818	0.0841612178256784	0.906286366946606	0.978634961443839
Merged-chr4-148626997-4	chr4	148626477	148627477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145556)	promoter-TSS (NM_145556)	19.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	8.71120616895808	8.8839128369146	8.30946073383904	8.61968636534484	8.57894003933959	8.38959578453662	-0.176828741693016	0.461931414030597	0.815107818354545
Merged-chr1-39367837-4	chr1	39367380	39368380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	29.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	7.16842283618897	7.34915888846356	7.18106460348076	7.1098572040921	7.05207882109845	6.90430872883416	-0.314554483734742	0.192639072041107	0.579638651494757
Merged-chr5-135687943-1	chr5	135687443	135688443	+	541.0	f1_balb.idr	Intergenic	B1_Mur1|SINE|Alu	-1202.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	5.98269267472495	6.23894784588238	6.19735797975517	6.15962781782866	6.52683730801904	6.25765350059223	0.31768285097841	0.283728430019577	0.681452732636412
Merged-chr5-125386006-2	chr5	125385506	125386506	+	914.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_019639)	TTS (NM_019639)	4011.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	3.55241438105872	3.43682476770975	3.48881613906849	3.63558581451061	3.8700975265135	3.87268099856099	1.05029900625872	0.0599636125840835	0.317052314665846
Merged-chr2-60211906-4	chr2	60211405	60212405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	1969.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	5.86004122559477	5.78075533392533	5.23542083637255	5.5735085118135	5.75811555538781	5.62090270914544	-0.0220270181686403	0.950600234324828	0.988459833015087
Merged-chr15-34444459-3	chr15	34443980	34444980	+	932.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1204.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	5.45469676707418	5.44139264481939	5.59128347260942	5.33024158413351	5.9362283675764	5.80711394683044	0.426862411008409	0.226898512111113	0.621890618706186
Merged-chr19-53141441-4	chr19	53140941	53141941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164101, intron 1 of 13)	intron (NM_001164101, intron 1 of 13)	998.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	4.81331561832055	5.08008175328826	5.3670439485174	4.78118869084821	4.85241091620758	5.48169136443884	-0.0657410556676657	0.881073509495636	0.97262624933271
Merged-chr5-105706822-3	chr5	105706341	105707341	+	933.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	6031.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	3.55953593134668	3.42207158034067	3.36684858750742	3.06452912389425	3.11247389000925	3.08280145904618	-1.55327365789877	0.0163992873810375	0.141389690643599
Merged-chr14-61679608-2	chr14	61679108	61680108	+	799.25	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	2765.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.98998633572284	6.13717942792984	6.15876535806069	6.0680999691233	6.24429014692037	6.23937216131524	0.156885715882192	0.58249497054577	0.873777001717516
Merged-chr2-4554958-4	chr2	4554447	4555447	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 11 of 23)	(TTTTTG)n|Simple_repeat|Simple_repeat	-4807.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.97928892349978	6.11883253901333	6.1258643366964	6.1260838685008	6.31962210682565	6.00628755164246	0.16002251663425	0.584634847227505	0.874618776844772
Merged-chr11-102245300-4	chr11	102244783	102245783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3599.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	6.17794231049654	6.07540298873292	5.77102553998743	5.81581219004359	5.59466500278067	5.34741149437832	-0.750767747453307	0.0257535920291607	0.190277471635802
Merged-chr10-115319319-2	chr10	115318819	115319819	+	744.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-3728.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	2.63873747474477	2.74399509727943	2.57188362711381	2.67931052344832	2.52311897154782	2.83264045386963	0.123266747161528	0.872681154347929	1
Merged-chr1-60979602-1	chr1	60979102	60980102	+	606.0	f0_balb.idr	intron (NM_017480, intron 1 of 4)	L2b|LINE|L2	1688.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	4.24949017147493	4.49619701440705	4.80320832481293	4.25461044585924	4.31650322010764	4.37091268782037	-0.543617210858302	0.242961367704996	0.640223247426838
Merged-chr5-122643929-4	chr5	122643413	122644413	+	995.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	2.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	7.6268648081885	7.48272506398212	7.30572703675878	7.21645923881504	7.33379520140124	6.7652481115546	-0.50708442482946	0.0624822557384933	0.324918663551563
Merged-chr12-69458157-4	chr12	69457639	69458639	+	892.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	17411.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	6.6606985756268	6.69205624515256	6.2080398684113	6.43395134457	6.63602604543317	6.05734357231484	-0.220848339724377	0.48704625963285	0.828231456470534
Merged-chr2-79087397-4	chr2	79086866	79087866	+	935.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168060.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.10464336692881	7.32989209269907	6.8525171210225	7.10063145974738	7.47599618186062	7.01439001502344	0.155494070182585	0.57793855752701	0.872239383750968
Merged-chr7-25079705-2	chr7	25079205	25080205	+	643.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001168506, exon 3 of 3)	exon (NM_001168506, exon 3 of 3)	2898.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	2.03195197327833	2.03775636360235	2.24233640748106	1.9688359322606	1.90203554882021	2.18946166418596	-0.6411019643377	0.497852957751056	1
Merged-chr15-80979584-3	chr15	80979080	80980080	+	661.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357669, intron 1 of 20)	intron (NM_001357669, intron 1 of 20)	1815.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	5.20704693873894	5.28587066552135	5.46847441164631	5.18867870255178	5.17115666610913	5.50311602790433	-0.0641487431512653	0.857591592072218	0.966767080388296
Merged-chr19-12475566-4	chr19	12475062	12476062	+	988.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	14783.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	5.20729495226146	5.02873617408392	4.71190491875471	6.21117566983083	6.38627294591296	6.10553089759052	2.28120505256964	6.11662364447121e-10	6.91510897023316e-08
Merged-chr2-25582588-4	chr2	25582076	25583076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2477.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	6.94112893908557	6.97324926241248	6.61991791090577	6.37754257699469	6.93230597063897	6.66215830295718	-0.273618493861974	0.350365912153758	0.738366841617277
Merged-chr1-144246657-4	chr1	144246176	144247176	+	921.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	2428.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.61872545962841	6.78269695961777	6.17368885633481	6.09327334028503	6.52916946474699	6.32010086611541	-0.369825197068331	0.241785432916389	0.638844223996789
Merged-chr10-117149502-2	chr10	117149002	117150002	+	572.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1028.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	4.42011805273278	4.49912647330362	4.64134223760315	4.70240209824224	4.9846261193505	4.78539093919113	0.756955654721056	0.0669201607984997	0.338131815511103
Merged-chr14-77848583-3	chr14	77848084	77849084	+	739.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025384, intron 3 of 5)	ORR1B2|LTR|ERVL-MaLR	26333.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	3.93327725818994	4.08600596093667	4.08207337824121	4.23976221736786	4.4243387091553	4.65214919522146	1.1171878236579	0.0192222747424841	0.157336989968618
Merged-chr2-154604892-2	chr2	154604392	154605392	+	668.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1219.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	5.43285918451482	5.4038082226663	5.47624255920769	4.53881139807311	4.51476257438504	4.47301366208189	-2.04693045838454	1.76472200608723e-07	1.17471190946005e-05
Merged-chr14-26437775-4	chr14	26437274	26438274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80227.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	6.52597212464502	6.30454314967331	6.28972046191414	6.32347391253852	6.72255573484325	6.48399651091605	0.237137753176005	0.407983019261888	0.781926100186554
Merged-chr9-120578196-2	chr9	120577696	120578696	+	868.5	f1_balb.idr|f1_c57bl6.idr	TTS (NR_073359)	TTS (NR_073359)	865.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	6.45287654760374	6.54019063315936	6.21758212341568	6.25075897785637	6.3356269081976	5.56342249528954	-0.506637996342063	0.142606166661895	0.504032656746792
Merged-chr8-77443298-4	chr8	77442832	77443832	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-73724.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.12923357075516	7.36468027051697	6.76100067242195	6.71195664545611	7.02584144788068	6.43766717938194	-0.545291776082386	0.0758211222575095	0.362539808419832
Merged-chr1-180260173-2	chr1	180259673	180260673	+	906.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3873.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	4.53922040811374	4.09274832617868	4.23342787372991	4.3049443816571	4.03854113979598	4.2559590835185	-0.287751040834268	0.555300686066402	0.863191483122339
Merged-chr3-9001627-7	chr3	9001180	9002180	+	946.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	2524.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.13470773743815	5.26667477283965	5.47486778422923	5.3221320342965	5.1880485485834	5.50954703793941	0.0915350846742393	0.798217684484401	0.951930937621884
Merged-chr4-132075426-4	chr4	132074928	132075928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001128607)	promoter-TSS (NM_001128607)	-115.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	7.74195246000472	8.19534506231426	7.82321416746108	7.52685642705751	7.92883717260745	7.62112416434287	-0.329123617019734	0.203656964177868	0.593800850631161
Merged-chr5-120523830-2	chr5	120523330	120524330	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177595, intron 8 of 13)	G-rich|Low_complexity|Low_complexity	12638.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	3.23857470146807	3.2143039528928	3.46782637229588	3.51531799090702	3.03767240101693	3.48586735622557	0.205861715752223	0.753393107135275	0.938549578325581
Merged-chr15-66684941-4	chr15	66684449	66685449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 10 of 47)	MTD|LTR|ERVL-MaLR	14179.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.01619796423669	3.84287499010144	4.14106431464752	4.09400049653949	4.10352924913649	4.45806611103371	0.633010260999682	0.204708833330202	0.595355628636074
Merged-chr10-127586378-3	chr10	127585884	127586884	+	852.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34764.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	4.96745405202393	4.71433547601636	4.97472656716698	4.48436710753447	4.32402623748041	4.67907413683536	-0.941392247200672	0.0263338388161575	0.1926604547456
Merged-chr13-47211295-2	chr13	47210795	47211795	+	996.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	17292.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	3.90853483866878	3.89174958951541	4.06863034054157	3.51344012311137	3.46861681165677	3.7067455422593	-1.34191103899758	0.014761624997262	0.131185014714534
Merged-chr19-32223926-4	chr19	32223429	32224429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-12916.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	7.59238001820256	7.66004756198884	7.10931757916838	6.91021090391971	6.84521585337901	6.87019364217951	-0.917684957860678	0.000512708200318197	0.0106920861985154
Merged-chr7-141560561-3	chr7	141560033	141561033	+	862.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	6.1095278950829	5.9184142030608	6.16235196306962	6.08565404969643	6.19883965889489	6.41127416996385	0.290758040007934	0.323211562725689	0.716594396783351
Merged-chr10-21618870-2	chr10	21618370	21619370	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	25725.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.71904508092462	4.43027413367574	4.62293146380077	4.64796863540123	4.53403114451237	4.52395492690469	-0.0598117684123364	0.887613422644399	0.973836995667151
Merged-chr13-93499655-4	chr13	93499153	93500153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_021310, exon 1 of 11)	5' UTR (NM_021310, exon 1 of 11)	155.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	8.24775215729646	8.28135993125777	7.87920723062344	8.14212462436368	8.00876038966622	7.64588366118946	-0.281559036877145	0.266130714961776	0.663894604423308
Merged-chr10-70257323-4	chr10	70256805	70257805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	12029.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.19851567336715	5.24375709269455	5.15271744182134	5.22523735782263	4.89122256679524	5.28073550578497	-0.144043896327117	0.697204128119417	0.919859963548202
Merged-chr7-13036574-2	chr7	13036074	13037074	+	771.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001243968, exon 2 of 6)	exon (NM_001243968, exon 2 of 6)	1053.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	4.12106458431496	4.02057060751386	4.48084093177529	4.24203015426005	4.14649039249538	4.42819595138223	0.161648026555205	0.739776105119365	0.934245371298156
Merged-chr10-99461795-4	chr10	99461304	99462304	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-147367.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	7.13651956513223	7.01703093402725	7.25214011310026	6.86306259426819	7.38582314693873	7.15669029956596	0.037665586135071	0.887849409765149	0.973901873299666
Merged-chr7-142398176-4	chr7	142397659	142398659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10289.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	8.01122368247423	7.9700203826776	7.93799717052269	8.23631989573185	8.53897196835881	7.88036733018346	0.397633414590902	0.113241553284873	0.44950878569448
Merged-chr5-66364093-4	chr5	66363605	66364605	+	858.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-26440.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	4.04159150819112	4.23099744113134	4.25419208290633	4.05206006188208	4.20724197527239	4.09243349193703	-0.147953306667422	0.756378165317188	0.939573416808291
Merged-chr12-78861026-4	chr12	78860546	78861546	+	991.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	592.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	8.01250167632088	8.32378057334253	7.54818921895346	7.98078294862237	8.08160057831115	7.51936167448413	-0.168685709547904	0.566996074154121	0.867700458659165
Merged-chr11-103133079-4	chr11	103132574	103133574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027658)	promoter-TSS (NM_027658)	-265.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	8.01007753262244	8.38324848215017	7.89276064159295	8.01623397097057	7.99101652267483	7.71441479394636	-0.283556223189471	0.254429748093916	0.651422827760809
Merged-chr11-55433134-3	chr11	55432622	55433622	+	848.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13042.0	NM_001290817	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	3.4138259236587	3.43917319314471	3.67102376087733	3.58988179864209	3.41323698759339	3.63950407518673	0.143049480919116	0.804898214656567	0.953691946645738
Merged-chr2-48988188-4	chr2	48987686	48988686	+	813.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029924, intron 1 of 16)	LTR87|LTR|ERVL?	-37952.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	2.88532385267911	2.99507799958667	2.87391273901916	3.0122417818453	3.14057213362248	3.24160217324528	0.963983108613675	0.156043583388619	0.526267610513952
Merged-chr1-155049190-4	chr1	155048702	155049702	+	970.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	34062.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	3.81768054193138	3.53325244014283	3.67116352114439	3.61254135375706	3.65382865294688	3.68888340528192	-0.097996144150898	0.859093596519786	0.967182074973526
Merged-chr6-116669280-4	chr6	116668762	116669762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178045, intron 1 of 10)	MLTR14|LTR|ERV1	4574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	7.663245621648	6.99784971211748	7.33995212146074	7.54864637319026	7.73187214255813	7.43002418561985	0.315448630518779	0.2557584588893	0.652762828432113
Merged-chr1-191849649-4	chr1	191849155	191850155	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28182.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	6.66989514171728	7.0212249695592	6.34942403751722	7.09765510425368	7.15113218117627	6.43132917955861	0.343908660448713	0.303406852579325	0.69995223991961
Merged-chr15-78298829-4	chr15	78298328	78299328	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	6893.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	3.26808311288396	3.25987145058659	3.26258624711836	3.15247725396025	3.06788815496531	3.22033850086983	-0.5110300135341	0.415838837765657	0.786747452594524
Merged-chr6-134068621-4	chr6	134068116	134069116	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	32916.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.02971891933252	5.73100084798429	6.02099508701617	5.82162436228621	5.7211157275133	5.97037552747507	-0.171423077339611	0.583270145891334	0.87400013033251
Merged-chr16-92801055-4	chr16	92800556	92801556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	25018.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.76673388853759	5.49830437461078	5.20927651888768	5.30801421142465	5.17077530942757	5.01724950307809	-0.68221337987803	0.0672468915492988	0.339137666469697
Merged-chr3-96198488-2	chr3	96197988	96198988	+	667.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-902.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	3.27129410699078	3.18762316855192	3.11973197527235	3.26684560486514	3.21733810288391	3.41964467449832	0.415226141301171	0.507081701544521	0.838829594648539
Merged-chr17-6960917-4	chr17	6960417	6961417	+	943.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_147155, intron 1 of 3)	CpG	239.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	6.16474071624552	5.4730245429509	5.25836253980157	6.52818417154788	6.13987459027417	5.91319525031866	0.890366793613515	0.0284543297990923	0.201947106271142
Merged-chr10-117416840-2	chr10	117416340	117417340	+	832.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30595.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	6.22422553832001	6.12375545218989	5.86407915752131	5.87656303769691	6.31581817289276	5.87454535685831	-0.0577262035791044	0.858630082059452	0.966948067562669
Merged-chr1-44147883-4	chr1	44147369	44148369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011729, exon 1 of 15)	5' UTR (NM_011729, exon 1 of 15)	125.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	6.86896873575478	7.28408332697633	7.29761530591683	6.76331415022178	6.86705902265165	6.86830755190674	-0.501189156922574	0.0578932811335792	0.3109465618747
Merged-chr13-30749931-4	chr13	30749441	30750441	+	955.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347508, intron 1 of 8)	intron (NM_001347508, intron 1 of 8)	708.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	6.55332149294444	6.52780288634458	6.16581432710612	6.40714078204226	6.43058306354957	6.01375847890348	-0.209437547206575	0.489052908459525	0.829459847891797
Merged-chr5-99284529-4	chr5	99284035	99285035	+	816.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31608.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	3.48660800160416	3.48074926180146	3.69272313588344	2.87839822119704	2.88046807964368	3.05848799522559	-2.95069660655973	7.42590805293332e-05	0.0022036196764211
Merged-chr10-67069163-4	chr10	67068656	67069656	+	980.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	27832.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	6.09571532526826	5.92155698010447	5.93051225168397	6.37794498956795	6.17578027136467	6.31654014334312	0.509596414735235	0.0766729660186494	0.36479927456547
Merged-chr13-21831551-3	chr13	21831104	21832104	+	885.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_175657).2	TTS (NM_175657).2	554.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	4.00450770017105	3.47402371808418	3.97494622736411	4.07816642009942	3.92820711675613	4.18038693291641	0.676684765471962	0.225475536484591	0.620422475032167
Merged-chr16-38442670-7	chr16	38442179	38443179	+	897.9523929999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9534.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	3.92761894220814	3.59053220701286	3.76605682403992	3.73967208351883	3.73778142703222	3.98163121223207	0.15729171709333	0.772391839794472	0.943716660313239
Merged-chr8-84707438-4	chr8	84706938	84707938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5981.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	5.7689406928928	5.56118115633171	6.84258638984731	5.82081246173577	5.93693305752522	6.31541733545415	-0.271687131943816	0.696040840114964	0.919291538728398
Merged-chr4-140964846-4	chr4	140964350	140965350	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355515, intron 1 of 7)	B4A|SINE|B4	3579.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	7.45457271276746	7.33561450523893	7.41467096996809	7.46190270680484	7.96557922780213	7.25410864473671	0.302783006099136	0.273710625768681	0.671093901905308
Merged-chr19-29420716-3	chr19	29420198	29421198	+	880.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	9779.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	5.41920562472774	5.30497858747083	5.20452321124143	5.24046270165249	5.44111347707976	5.30176145449141	0.0355741606133379	0.918199587297853	0.981747877135909
Merged-chr5-103389605-4	chr5	103389096	103390096	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35596.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	3.00039405637936	3.04783464013175	3.46580303471947	3.098175846922	3.03929303901733	3.16519789469231	-0.346230629848048	0.608667918773373	0.885006356798728
Merged-chr11-60537311-1	chr11	60536811	60537811	+	1000.0	f0_c57.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-372.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	8.66619334272755	8.75695802987093	8.50125206742278	8.46231021193663	8.67766460731533	8.34831684331456	-0.194030020632756	0.374835001781827	0.758128885281656
Merged-chr14-25472114-2	chr14	25471614	25472614	+	925.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_183208, intron 1 of 23)	ID_B1|SINE|B4	12929.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	7.00538573297818	6.85513107260781	6.24967428155913	6.19116246003184	6.35225245230395	6.02928952812424	-0.883194378066769	0.00628240262272345	0.0721925365877051
Merged-chr19-9916136-4	chr19	9915676	9916676	+	873.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16643.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	5.58426571116638	5.14070792988935	5.13936803625883	5.67485952663088	5.38149347043977	5.43523502564316	0.36563816926638	0.321606895044397	0.714998971941491
Merged-chr7-26244023-4	chr7	26243541	26244541	+	970.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22790.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	4.13190386420102	4.45677620795172	4.57129711401119	4.4234878247439	4.14230262876419	4.88237015348053	0.285377504252459	0.571512260309293	0.869547320544841
Merged-chr10-58382723-2	chr10	58382223	58383223	+	571.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	11269.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	4.85367618840998	4.86646540602538	5.01242177398047	4.70720488508519	5.0410801861669	5.04271559334961	0.0736990285400354	0.850474975940469	0.964960207784097
Merged-chr11-115189518-4	chr11	115189014	115190014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	2027.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	8.6926960688287	8.61093357112571	8.03793974369763	8.62543128454204	8.92374051596735	8.34565954647147	0.239635671320973	0.385980884772543	0.766805542862881
Merged-chr17-31073114-2	chr17	31072614	31073614	+	907.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	(CA)n|Simple_repeat|Simple_repeat	15420.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.44361040333324	6.98681796636639	7.24580246179965	7.01780939984838	7.20466917812472	6.80398052640997	-0.316840339126616	0.245096979226007	0.642381314494918
Merged-chr7-101365951-2	chr7	101365451	101366451	+	631.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040111, intron 1 of 33)	B1F1|SINE|Alu	-12171.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	4.88528601964057	4.63882161160506	5.04392129140644	4.91153938863794	4.26928273346293	4.46154544288957	-0.66049376219235	0.154354702100654	0.523641596057681
Merged-chr4-106840116-4	chr4	106839546	106840546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-35039.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	5.19174468551438	5.34734682882972	5.33319807054206	5.72635511403501	5.47734285536999	5.54556439480457	0.569601722315449	0.0909885262117047	0.401472758989475
Merged-chr2-28540128-4	chr2	28539620	28540620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	6656.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	6.97214709107139	6.63772094455493	6.08187486255449	6.42178881529335	6.57971650595338	6.16782663821604	-0.349505078270935	0.304525119729762	0.700969682849711
Merged-chr1-63130548-1	chr1	63130048	63131048	+	576.0	f0_balb.idr	intron (NR_045914, intron 1 of 3)	B3|SINE|B2	15808.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	3.47887037037218	3.46870267746786	3.43555520824902	3.49169443053991	3.64952956968272	3.45045636003219	0.283272286800722	0.622801814726741	0.891249034616027
Merged-chr11-76605401-3	chr11	76604913	76605913	+	718.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27674.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.27156759450031	6.44155505697463	6.16613994765045	6.58682061210173	6.88308613560035	6.37519169202154	0.548356816349004	0.0622467848353593	0.324139838073758
Merged-chr3-53460265-4	chr3	53459767	53460767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	2991.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	7.74440385130018	7.64429602248719	7.6531811994386	7.93014081309984	7.78621263697072	7.78068781725353	0.219071190403367	0.312556294945653	0.707190484237326
Merged-chr10-67215320-4	chr10	67214817	67215817	+	882.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_207221, exon 4 of 26)	exon (NM_207221, exon 4 of 26)	29567.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	5.52002538985249	5.39237519419901	5.81247160720335	5.69802504871046	5.85785457377701	5.80098912840399	0.397144154255704	0.225484333649987	0.620422475032167
Merged-chr3-36771739-4	chr3	36771254	36772254	+	920.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-81587.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	4.3105163029919	4.46531992723055	4.44298667445653	4.2567893973472	4.23727833350477	4.46809132463622	-0.237033238246518	0.595986075095945	0.879784436577846
Merged-chr17-10500981-4	chr17	10500547	10501547	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	44831.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	4.25168372522253	4.18537977424808	4.15592599654349	4.1407452635621	3.97261777660622	4.08174970565657	-0.391783708731902	0.408293120648012	0.781982251625038
Merged-chr2-181275493-4	chr2	181274977	181275977	+	984.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	12489.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	7.78792203441867	7.79060087572687	7.87287509374252	8.04476907384659	8.3641706139535	7.76847941983487	0.392372582818472	0.113150352362925	0.44938889230771
Merged-chr18-67770933-3	chr18	67770412	67771412	+	608.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3964.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	3.65647365936053	3.71412726360308	3.80215346145292	4.28610336271003	4.11600397794658	4.38147766500027	1.63686137583987	0.00136336261673437	0.0229734055514852
Merged-chr3-98033465-3	chr3	98032979	98033979	+	906.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19941.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.34740893382969	5.18540009020394	5.1506008073123	4.77575857795305	4.84721321423316	4.97312032372678	-0.793632237456975	0.03249762678161	0.219218689034796
Merged-chr2-131237218-2	chr2	131236718	131237718	+	603.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144888, intron 1 of 6)	B3|SINE|B2	3155.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	3.52307033238983	3.49173276818784	4.03107262893444	3.67290717116266	3.36306359076043	4.09790200476992	0.133911739813361	0.833710438667486	0.961104751385188
Merged-chr10-63243048-3	chr10	63242432	63243432	+	887.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-865.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	5.94543188373929	6.49379668347396	6.61904244145533	6.8714876031266	7.00140724458374	6.55943929096157	0.716923421301845	0.023848561777878	0.181488122225505
Merged-chr3-9902554-4	chr3	9902047	9903047	+	995.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68868.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.57446955717889	4.58620138538563	4.6581505332829	4.47940073827423	4.62891568755823	4.52083758704735	-0.132443449524739	0.750106340466669	0.937525886645696
Merged-chr1-91235593-4	chr1	91235102	91236102	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6B|LTR|ERVK	-14702.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	2.72194105458365	2.82446671536076	2.84707661969197	2.80717517192182	2.74010187267839	2.67033756808535	-0.289566637926681	0.689916454292865	0.917545271014766
Merged-chr10-44735944-4	chr10	44735427	44736427	+	772.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-277179.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	2.9567910421022	2.66562206478174	2.92853127719369	2.73734624977038	2.5896006684052	2.88339375769806	-0.611865250391422	0.416284018203631	0.787183450387086
Merged-chr14-25393111-3	chr14	25392611	25393611	+	974.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-66074.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.50064854400079	3.6065712893001	3.51474548545277	3.43526031711793	3.36840228618765	3.73662718174979	-0.106664089981421	0.85545386115313	0.966221950601062
Merged-chr15-78580603-3	chr15	78580114	78581114	+	970.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	975.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	5.87875553549567	5.76471676121586	6.17385097796443	5.86224269387116	5.73188730934138	5.78878425366209	-0.258494355378321	0.411691335564348	0.784017205335022
Merged-chr9-24503009-1	chr9	24502509	24503509	+	1000.0	f0_balb.idr	exon (NM_172920, exon 1 of 22)	exon (NM_172920, exon 1 of 22)	131.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	5.58913968397852	5.38992853183699	5.73330912659884	5.57904692363147	4.93607025078568	5.32632397092549	-0.523440729898243	0.170723635937022	0.548384536157433
Merged-chr1-55507279-4	chr1	55506801	55507801	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	101355.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.27228044403949	7.38558500112784	6.96653705176804	7.08646606390821	7.49567404015763	6.84237716971555	-0.0645515575768432	0.824414166622568	0.958579329481158
Merged-chr2-165332818-4	chr2	165332310	165333310	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6331.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	6.27492356646316	6.2275093560038	6.76659888517847	6.43985918337494	6.39367253352094	6.67799401699501	0.111889604536333	0.712082852704257	0.924891945289204
Merged-chr1-87213901-4	chr1	87213400	87214400	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-11.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	8.1061242572342	7.70068071892819	7.63020834683698	7.88144722080798	7.5156690940641	7.45319151279321	-0.290089441789194	0.274236082999873	0.671699134465491
Merged-chr6-72110783-2	chr6	72110283	72111283	+	546.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12157.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.24629741779164	5.07734649730436	5.41677833856064	5.8061981269537	5.41371901692029	5.56539144923032	0.69491822673675	0.0498840977398444	0.284278885332304
Merged-chr12-41407822-3	chr12	41407325	41408325	+	864.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053122, intron 4 of 6)	ORR1C1-int|LTR|ERVL-MaLR	78232.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.78523985385502	2.9060409404872	2.87930744584286	2.7505978340633	2.81861317893186	2.70358923446659	-0.491432503692915	0.495439039507972	0.832500902975543
Merged-chr5-50059027-4	chr5	50058492	50059492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133911)	promoter-TSS (NM_133911)	4.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	3.2623248375149	2.98335505685301	3.27711436676658	3.29671036848939	2.84118027426465	2.86409840316038	-0.697624868386199	0.338511355823915	0.72854101948674
Merged-chr15-59819870-2	chr15	59819370	59820370	+	657.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24911.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	6.13754538678524	5.78399754113158	6.06533531705327	6.3253609254088	6.39155323436459	6.33257276287727	0.591794780655292	0.0423869586667531	0.257986545003525
Merged-chr15-100681972-4	chr15	100681461	100682461	+	879.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033612, intron 5 of 7)	B1_Mur2|SINE|Alu	5959.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	5.17935751274585	4.88612894934819	4.98609173337715	5.31533149627141	5.22472690550822	5.52010126227374	0.665742657206578	0.0711622588030385	0.349874097759586
Merged-chr15-80813050-4	chr15	80812555	80813555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	14445.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.35714230200701	4.68441147906462	4.47729683401721	4.47966987099892	4.46340550343807	4.41390932756914	-0.158365049109578	0.717171546082907	0.926979087819795
Merged-chr6-29825464-4	chr6	29824951	29825951	+	878.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-28290.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.12604609768509	4.08577944148209	3.74391892319677	4.06407589655694	4.23100663057113	4.13021029796293	0.40147916658897	0.430456451545245	0.79626959019857
Merged-chr12-32943576-1	chr12	32943076	32944076	+	608.0	f1_c57bl6.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	10213.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	2.62020236848442	2.44658451453772	2.70703203770682	2.57971711938376	2.52736976508893	2.71961384221423	0.0879847219574174	0.909654106708384	1
Merged-chr11-50244947-2	chr11	50244447	50245447	+	599.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER2|DNA|TcMar-Tigger	-6415.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	5.65875122520435	5.64102952961836	5.85388387120384	5.96305339422588	5.63836669398158	5.84283708975576	0.18610861737031	0.559317721588791	0.864901733108576
Merged-chr14-61673531-2	chr14	61673031	61674031	+	708.416626	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	URR1A|DNA|hAT-Charlie	8842.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	3.9737003120091	3.99549380694829	4.28169944976731	3.99912606555764	4.09401722535392	4.38861151583302	0.229638562814259	0.644646113336038	0.900287351502017
Merged-chr8-70674217-4	chr8	70673730	70674730	+	780.450012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015816, intron 1 of 4)	ID_B1|SINE|B4	999.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	7.6841140066107	7.75922856490965	7.63826605513102	7.70365220544449	7.86938032652368	7.44272028546686	-0.00502750039163852	0.983063283749356	0.996209106250353
Merged-chr1-91398812-4	chr1	91398295	91399295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355152)	promoter-TSS (NM_001355152)	28.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	7.00913724787803	7.08027163771473	6.98355127169277	7.23619603795014	7.0483450589376	6.83801574141691	0.0462611157672941	0.854471130907918	0.965987623019113
Merged-chr16-37653190-2	chr16	37652690	37653690	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	1178.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	3.65782275519145	3.32323591152212	3.39817438138173	3.71259707645686	3.93083780611806	3.58834101632717	0.996278310589701	0.0939158098181821	0.408240868422908
Merged-chr2-163602882-4	chr2	163602370	163603370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_131225, intron 1 of 3)	intron (NR_131225, intron 1 of 3)	556.0	NR_131225	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	7.936795365713	7.98642543649149	7.78777889959774	7.73108113260795	7.4869196069321	7.08736578979005	-0.632323938889411	0.0157565421820578	0.13747198929272
Merged-chr15-36793687-4	chr15	36793173	36794173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_011740, exon 2 of 7)	5' UTR (NM_011740, exon 2 of 7)	865.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	8.98610459807285	8.92638067629702	8.71987894911343	8.73250420325201	8.50086110013422	8.71877516280629	-0.320889470493204	0.128431832953369	0.479325227915851
Merged-chr1-92677320-2	chr1	92676820	92677820	+	630.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28479.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	3.91187284134499	3.70717029553538	3.80389862409505	3.38542375801977	3.41781426024072	3.61769476077481	-1.202606398174	0.0345116215280894	0.227643894327956
Merged-chr2-83742379-4	chr2	83741865	83742865	+	987.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008402, intron 2 of 29)	Charlie24|DNA|hAT-Charlie	17968.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	4.52361438393298	4.21416131340641	4.69192540288268	4.46354826031996	4.33808574495105	4.48481312914571	-0.14167435392551	0.755245185161605	0.939266637440812
Merged-chr5-36562401-2	chr5	36561905	36562905	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19992.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	6.72056800951006	7.15372555813901	7.02861578841279	6.69072308997057	6.8884420780433	6.76015387511479	-0.299655042568457	0.264769738972395	0.662666328517541
Merged-chr8-46639227-4	chr8	46638753	46639753	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009810, exon 7 of 7)	3' UTR (NM_009810, exon 7 of 7)	21962.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	5.47617831009106	5.93864876613344	5.85446778760589	5.84887200615816	5.88700406225614	5.59857162217758	0.0396163252117357	0.905977478621696	0.978576016264467
Merged-chr13-37944543-2	chr13	37944043	37945043	+	668.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177869, intron 10 of 11)	intron (NM_001177869, intron 10 of 11)	49665.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.87245533938736	3.08541719298751	3.2423130110546	3.20210065792603	2.99450020655638	3.25861206517778	0.355839426984082	0.599649464708191	0.881122597050421
Merged-chr17-64684301-2	chr17	64683801	64684801	+	943.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 12 of 21)	intron (NM_008549, intron 12 of 21)	82652.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	3.45461952863252	3.4931573119547	3.51886991752203	3.34418258760387	3.27149589443217	3.68970901730045	-0.186816932181763	0.75631925711887	0.939561253304672
Merged-chr1-171017025-6	chr1	171016567	171017567	+	918.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1859.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	7.16506437441825	7.207852289711	7.10479619986673	6.80153076303259	7.02723991221719	6.78164115681469	-0.423795045797765	0.086221146053521	0.388976855390445
Merged-chr11-61505084-4	chr11	61504591	61505591	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013717)	promoter-TSS (NM_013717)	-53.0	NM_013717	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	6.89079022704674	6.91751377323946	6.34230888181188	6.67644140074931	6.99786004407929	6.17744299730092	-0.12042360664677	0.724053327515672	0.929178878081464
Merged-chr11-114675446-4	chr11	114674937	114675937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053273)	promoter-TSS (NM_053273)	-31.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	6.52202815493115	6.65756316613793	6.63796365015221	6.69280231973313	6.89452129648059	6.86485245649128	0.339684000045469	0.184236973860961	0.567869251150334
Merged-chr10-81358345-3	chr10	81357844	81358844	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	853.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	7.02498234350069	6.96189340138676	6.47076863021389	6.85011058049757	6.94744644113263	6.45167442020604	-0.116502874313406	0.699577316788267	0.920619136555148
Merged-chr14-14640728-4	chr14	14640221	14641221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-62304.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	4.72085425819175	4.6796794710399	5.0958310336093	4.63305156818482	4.86247392482143	5.06427949388884	0.0571473709260266	0.891413209144665	0.97481515470711
Merged-chr17-27908772-6	chr17	27908258	27909258	+	897.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286040)	promoter-TSS (NM_001286040)	484.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	7.67415398868218	7.57715071222454	7.24841714065621	7.45624072508449	7.53619076609786	7.64228482549338	0.0342221068759679	0.888201737769956	0.97401529899353
Merged-chr7-44136416-4	chr7	44135921	44136921	+	941.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008454)	promoter-TSS (NM_008454)	-869.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	3.49331583579907	3.13581942813769	3.21219500288012	3.1585567212946	3.23624307735589	3.03952840554676	-0.582601962050332	0.37950186659118	0.761915582466374
Merged-chr4-63554660-2	chr4	63554160	63555160	+	641.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4103.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	5.38608446019648	5.60599875297236	5.80273640647554	5.75414973911617	5.78313386634027	5.63231304091521	0.240872184825592	0.462802126472665	0.815451584827553
Merged-chr4-84862128-4	chr4	84861624	84862624	+	996.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22185.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	3.50275791964833	3.25385106441144	3.45561284187189	3.40649716259922	3.13559478198792	3.52603781102467	-0.186360867784068	0.765907866309134	0.942315053650124
Merged-chr7-67374649-2	chr7	67374149	67375149	+	975.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1791.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.11292518359118	4.6464933821822	5.29947859107725	5.00398547037373	4.77710367083299	5.11964020781901	-0.154857567998687	0.713574012846601	0.92557476402444
Merged-chr5-32854335-4	chr5	32853830	32854830	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194340)	promoter-TSS (NM_194340)	-100.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	6.31133390049713	6.17158030940921	6.18034891876113	6.35411653793411	6.47195459074717	6.50930025894951	0.363329962961444	0.182355634057928	0.56516118886666
Merged-chr2-126602422-4	chr2	126601928	126602928	+	868.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008230, intron 7 of 11)	intron (NM_008230, intron 7 of 11)	16250.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	3.10525292131094	3.18224287328244	2.94024932288365	3.07326353524223	3.17554381253176	3.13660361932283	0.19566461770377	0.767458039612067	0.942617496111852
Merged-chr15-31452344-2	chr15	31451748	31452748	+	715.75	f0_balb.idr|f1_balb.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	1441.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	3.45469339256645	3.60828304768643	3.49441381210689	3.56857812805201	3.54277368949076	3.33438009552076	-0.112290581298747	0.847605582861497	0.964318271116593
Merged-chr10-12957489-4	chr10	12956957	12957957	+	893.3958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	6802.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	5.1787054771328	4.86958436772932	5.09506639049941	5.25523028783783	5.54481008347374	5.16013980224739	0.592547884733858	0.114005828120905	0.450886303830234
Merged-chr9-83537295-2	chr9	83536795	83537795	+	601.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	-11043.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.15012699154314	6.01908916348539	5.96878720672657	5.56121624393006	5.66870480906646	5.81367488859394	-0.663226650591075	0.0296248670537451	0.207162445399447
Merged-chr13-92354880-8	chr13	92354362	92355362	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	79.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	6.85291732980746	6.99790407710246	6.75114923009418	6.70868108579497	7.00326585462215	6.71332466086688	-0.0799790619804078	0.761327040941715	0.941243338672544
Merged-chr7-99957607-3	chr7	99957105	99958105	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	22853.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	4.77988348946977	4.83831836379795	4.53744908392068	4.71226956781973	4.67067466854107	5.15171286026581	0.268701802326178	0.529664181617925	0.851027930520951
Merged-chr2-70946932-4	chr2	70946443	70947443	+	916.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	71431.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	3.35479841007851	3.31848315981526	3.14873611604121	3.21232695440189	3.12276695254806	3.55164736361122	0.0798888071356734	0.901739761913383	0.977356766938531
Merged-chr2-32236048-2	chr2	32235548	32236548	+	715.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-635.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	6.11703512414846	6.15677240074674	6.38860447203441	6.14458047403295	6.36498121673563	5.96839420097665	-0.0608588454753306	0.839307679152532	0.96277917982442
Merged-chr12-105685345-4	chr12	105684845	105685845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	-7.0	NM_178613	66787.0	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	7.58752686722843	8.13511532868358	7.62678352802493	7.7809301813411	7.67710296678625	7.58673145692661	-0.186745445890055	0.472610348116025	0.820550293768681
Merged-chr14-25850600-3	chr14	25850083	25851083	+	817.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	8428.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	3.6547193757579	3.47012245755794	3.35267793674018	3.42934209253326	3.3935491998456	3.48188653400843	-0.265887822849439	0.652247671156491	0.902896807825606
Merged-chr1-181861933-2	chr1	181861433	181862433	+	659.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	-19532.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	3.44256155074738	3.41218556600244	3.33908386862982	3.75328912719586	3.67068543475614	3.52900324525016	0.928106125263811	0.107661451749937	0.438358488804502
Merged-chr16-17276812-3	chr16	17276342	17277342	+	954.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177473, exon 3 of 10)	exon (NM_177473, exon 3 of 10)	542.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	4.39814793400428	4.30072116296766	3.74802741917503	3.70705841865859	3.68874757565528	3.64529360930355	-1.56878911406041	0.00549004045052097	0.0654465009226814
Merged-chr8-120127123-2	chr8	120126623	120127623	+	809.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	12971.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	2.34374919388549	2.30479967730673	2.56866421068254	2.23023979450502	2.10283439899735	2.26475877057452	-1.47892731768189	0.0980422060714929	1
Merged-chr8-125568503-4	chr8	125568007	125569007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1356.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.90196569394465	6.70561860070092	6.51782498182994	6.57369262714041	6.74106625155458	6.57730955621673	-0.138970247759685	0.606530841861854	0.884156564218602
Merged-chr5-134551448-4	chr5	134550910	134551910	+	776.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	1024.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	4.13196809416239	3.79877879214546	3.96969065547361	4.16379605515213	4.28015942713469	4.0892032781842	0.607538110680576	0.221916277307708	0.616788023295903
Merged-chr11-118176407-2	chr11	118175907	118176907	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	36335.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.55873553860114	2.70781590313698	3.00076497393456	2.88605198989235	2.68650303759436	3.01644670491443	0.514485834180949	0.501813671883923	0.836022696421896
Merged-chr3-98083143-4	chr3	98082627	98083627	+	985.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 5 of 33)	RSINE1|SINE|B4	69589.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	6.02835211337585	5.92956427688358	6.17642136608412	6.2433280038025	6.57941438004284	5.56379886533349	0.280069928196728	0.448880900442233	0.807454029128485
Merged-chr2-122234827-4	chr2	122234344	122235344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	5.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	5.98196236083686	6.00443868085693	5.70572781337761	5.72340355473572	5.3634357204043	5.20014019545385	-0.839442683838645	0.0158351244708357	0.137983981251366
Merged-chr2-14231061-3	chr2	14230535	14231535	+	885.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	1621.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	7.59372912166381	7.92803345694484	7.39419246205025	7.81335862372762	8.05807004305554	7.27136467344827	0.145271661582612	0.626057695746707	0.892797621675774
Merged-chr17-56256056-4	chr17	56255511	56256511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-782.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	7.61921016851017	7.95371403843965	7.45151095283647	7.54002910669019	8.14645161488858	7.77803743803983	0.22118164013154	0.426715870989913	0.793849313274879
Merged-chr10-127563566-2	chr10	127563066	127564066	+	809.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-29007.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.79366451634431	2.85325810813207	3.17144619435743	2.76790159102962	3.0698026865806	3.07709801270061	0.164580460186527	0.820425531077014	0.957629072297684
Merged-chr6-29541192-2	chr6	29540692	29541692	+	700.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001347079, exon 23 of 23)	3' UTR (NM_001347079, exon 23 of 23)	11910.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	4.43387657363102	4.20132684376471	4.1273391551779	3.9504915755446	4.08068622127144	4.14864363040376	-0.579028146926075	0.230409693066599	0.626271502694957
Merged-chr1-182908573-4	chr1	182908081	182909081	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-46207.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	5.2157172088813	5.05500864169113	4.70433337074522	4.6620414520837	4.71571562054589	4.68784183903171	-0.740512687333342	0.0699565924691508	0.346302934344326
Merged-chr5-43788212-2	chr5	43787712	43788712	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6063.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.44000564062323	5.31159546159241	5.18282658760999	5.04528632970174	4.73694235536562	5.24685103130757	-0.641329896780256	0.0946722859423687	0.410136490273995
Merged-chr2-26352127-4	chr2	26351620	26352620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-10.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	5.93970438235705	5.99063484292257	5.98214586797027	5.84223488175088	6.00111500793979	5.60018452794632	-0.230086583980207	0.459429464011529	0.813650156404876
Merged-chr4-15267995-3	chr4	15267523	15268523	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	2203.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	4.79038431880252	4.95493504595395	4.68426605440548	4.34645166386565	4.65789357311444	4.62908966448733	-0.626813871077279	0.138502970885263	0.497369781253334
Merged-chr3-95014854-4	chr3	95014362	95015362	+	932.491699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357863, intron 1 of 8)	CpG	376.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	6.29862208822749	5.91145478804806	6.11429593070577	6.3210462851393	6.27168950194229	5.88895184514473	0.11223022263145	0.720116577284648	0.928048635680338
Merged-chr1-34838488-4	chr1	34837980	34838980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001160236, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4570.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	7.061769165231	7.21993124036701	6.73945950596039	6.88686945348426	7.26339617382597	6.92263661087891	0.0185013283575928	0.946987603139246	0.988007649185823
Merged-chr7-5038419-4	chr7	5037905	5038905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039532)	promoter-TSS (NM_001039532)	41.0	NM_001039532	654801.0	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	6.67718392948073	6.90027399762691	6.80738960563752	7.11081112138612	6.70566198057511	6.75809118403822	0.113191973070249	0.675445516129553	0.912155652131913
Merged-chr9-38725428-2	chr9	38724928	38725928	+	752.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	7160.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	3.32462408165307	3.18222643311538	3.17737181631603	3.66479562690474	3.56823221290833	3.48825319335784	1.33571027530429	0.0283416749723553	0.201502136757209
Merged-chr2-34576792-2	chr2	34576292	34577292	+	676.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	169941.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	3.39802213971201	3.60899703923269	3.54826380632012	3.41747497663264	3.58153427452166	3.45488652191638	-0.110789896252319	0.848748523398786	0.964368239368528
Merged-chr6-38874131-4	chr6	38873618	38874618	+	855.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	2072.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.38549189618037	6.14420646424314	6.08211637351696	6.28908617431132	6.37023308202947	6.29248096549221	0.171027151497804	0.545966224400078	0.858474575756485
Merged-chr18-36386432-2	chr18	36385932	36386932	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	37808.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	2.84242558549292	2.79378959979282	2.87469284340333	2.74217306889329	2.59513478920606	2.94698695249288	-0.382263835524259	0.603956733142817	0.882883084260734
Merged-chr5-65931467-3	chr5	65930974	65931974	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35650.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	4.12401304755967	4.08519781591872	4.26072160657161	4.08430207409608	4.00626756381451	4.00451571576008	-0.349523337662577	0.465717359183247	0.817146354802119
Merged-chr9-41051708-4	chr9	41051196	41052196	+	862.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27810.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	3.42487489889827	3.40353090371798	3.57763767638687	3.77337432145546	3.97834765960948	3.95198306485327	1.52491197378085	0.00607701570418207	0.0704256716871284
Merged-chr2-32967493-4	chr2	32967000	32968000	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4199.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	9.22158417135867	9.6033050028259	8.77328304995022	8.90010493282134	9.41648631558841	8.76531771294758	-0.250662996500178	0.394762380348428	0.77255252232071
Merged-chr10-128138053-2	chr10	128137553	128138553	+	748.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 7 of 13)	intron (NM_001039080, intron 7 of 13)	38515.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	1.88989846090006	1.75007294990246	1.82291138738031	1.97946547347165	1.82906931936997	2.10367870331014	1.27177886607809	0.203961378112898	1
Merged-chr1-16671279-4	chr1	16670793	16671793	+	993.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027415, intron 2 of 2)	B2_Mm2|SINE|B2	6102.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	4.94381094872924	4.86095753727585	4.95645612544099	5.46662574384044	5.37245629389791	5.19901835396967	0.908538127710948	0.0116424831368676	0.111919828896801
Merged-chr8-109864579-2	chr8	109864079	109865079	+	696.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_009677)	TTS (NM_009677)	-4024.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	5.22167934219319	5.35145398919941	5.38836538903613	5.15096186665099	5.39905278985508	5.69183381122344	0.205140119633103	0.569885626802571	0.868910326260025
Merged-chr13-112335789-3	chr13	112335186	112336186	+	962.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168403, intron 5 of 11)	MIR|SINE|MIR	47168.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.11922548555148	3.24390197890629	3.01665492723047	2.78417516029039	2.75883841227804	2.90588385202861	-1.59913587924302	0.0254134573211077	0.188955674807857
Merged-chr16-91871883-2	chr16	91871383	91872383	+	1000.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001110275)	TTS (NM_001110275)	59747.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.21645835501294	3.97569089380931	4.2781997098461	4.39040034908292	4.13117406593136	4.47069832707882	0.47069485683075	0.326031419783358	0.718486751439343
Merged-chr11-116425067-2	chr11	116424567	116425567	+	661.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9027.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	6.97009063568623	6.73972923665244	6.70503603992612	6.82195608665048	7.19193579982459	6.87279078668568	0.256954823904319	0.338846459742944	0.728835613269201
Merged-chr7-143058343-3	chr7	143057784	143058784	+	837.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-4598.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	5.4638475814633	5.66837561636945	5.96504540613416	5.85200796756352	5.79056552665998	6.10955017046998	0.381885576268393	0.251441707874237	0.648924091337103
Merged-chr4-102801697-4	chr4	102801186	102802186	+	961.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144906, intron 1 of 23)	L1MB8|LINE|L1	41551.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.72392243701303	4.68666130052162	4.34978800890291	4.60962647722881	4.34748309459866	4.63615765476356	-0.189785684692436	0.668043173715485	0.908976375106763
Merged-chr5-123395591-5	chr5	123395129	123396129	+	724.766663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	831.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	7.11174446411359	7.23487089618542	7.17515002215202	7.49305982682376	7.60061290152533	7.26909652160484	0.436272676339309	0.0677880403665867	0.340754380645378
Merged-chr5-44048757-1	chr5	44048257	44049257	+	1000.0	f1_balb.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	46011.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	2.93358652879106	2.9187477030242	2.78558027668766	3.18861004074551	3.05670701352761	3.11050158492129	1.08716862085056	0.115172722650012	0.453031899581093
Merged-chr11-8589699-4	chr11	8589194	8590194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74841.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.08060217626366	6.83830503676697	7.06638591982828	7.07009723822979	6.86022388412269	7.14886040462407	0.0431255243856095	0.865419662874573	0.968641478520565
Merged-chr5-62677559-4	chr5	62677041	62678041	+	933.7999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178407, intron 12 of 32)	intron (NM_178407, intron 12 of 32)	88636.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	3.57686912067156	3.4360665164575	3.7585302132316	3.54852921059453	3.34102208981149	3.47019415819519	-0.509235420190305	0.385586501178607	0.766591069902819
Merged-chr2-124627910-4	chr2	124627412	124628412	+	989.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291000, intron 1 of 18)	B4A|SINE|B4	17616.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	5.77114470883594	6.04237936595013	6.0337971354102	5.76522112215413	5.90583630489055	5.67816658896779	-0.279548815285653	0.370274093509042	0.75468690157258
Merged-chr15-95887578-4	chr15	95887066	95888066	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-57494.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.42951387624444	4.52037622222597	4.3772006712967	4.65024363247712	4.37506113390235	4.40035832117884	0.0836983656324207	0.848474882864382	0.964356989789491
Merged-chr16-11065541-2	chr16	11065041	11066041	+	762.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-757.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	4.35798020869541	4.58762923404439	4.62350564471728	4.6378272769204	4.4710540264021	4.44028538982605	-0.00957509526527537	0.982306280835319	0.995992226862322
Merged-chr11-86357418-4	chr11	86356907	86357907	+	954.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080931, intron 1 of 29)	CpG	118.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	7.80032242857267	7.80961118791117	7.7810294465048	7.94578190797524	7.9079654120766	7.87855841903174	0.163391668071639	0.435440366274723	0.799027463227912
Merged-chr14-87422490-2	chr14	87421986	87422986	+	826.0	f0_balb.idr|f1_c57bl6.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	5903.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	4.51443718332635	4.73862550744873	4.72156380890676	4.27868905938449	4.33491828518916	4.42955844803741	-0.799140750895359	0.0648014795329056	0.331850283237962
Merged-chr11-115070291-2	chr11	115069791	115070791	+	832.025024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8252.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	2.66977252494939	2.72022809775128	2.79628920617218	2.56586634308575	2.550547777631	2.92641087756567	-0.225242581104012	0.769065955828357	0.942996711234581
Merged-chr3-83885338-4	chr3	83884822	83885822	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43714.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.14660081007742	4.66863114382549	5.25944279400902	4.91925896913308	4.81327150971647	4.73850201928183	-0.46720490349741	0.263053428698809	0.661066252782647
Merged-chr9-114640147-4	chr9	114639621	114640621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153585)	promoter-TSS (NM_153585)	79.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	6.87132347618778	7.27036717068228	6.46408867889556	7.05671072521995	7.37769090516624	7.06251417260933	0.385977140378896	0.212158196387736	0.604576945822415
Merged-chr2-161041431-3	chr2	161040927	161041927	+	803.277771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67659.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	5.37833018756316	5.51418430586028	5.34265378449266	5.42957701211235	5.68449415750159	5.37484899865658	0.185298150880565	0.586791986691984	0.875655897836385
Merged-chr13-99099938-2	chr13	99099481	99100481	+	727.708374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12060.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	4.31360053980407	3.982573347095	3.89140304623476	3.69933628119464	3.78585483174154	4.10643709573234	-0.643089983458048	0.232683964155863	0.628965135652341
Merged-chr6-128135220-4	chr6	128134700	128135700	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8378.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	6.03177265726823	5.93402848115833	5.81422442090645	6.44638887991798	6.7433789217095	6.05613318150272	0.879457868667294	0.00613890612261188	0.0709452917569846
Merged-chr7-31116778-4	chr7	31116258	31117258	+	890.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011322, exon 6 of 6)	3' UTR (NM_011322, exon 6 of 6)	-1432.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	6.47500492931652	6.37634449700693	6.6947795462719	6.39517745831586	6.33531576360265	6.72325446840351	-0.0465928285792366	0.870559913669005	0.970084781962666
Merged-chr5-137286800-4	chr5	137286315	137287315	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1439.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	2.71574632928113	2.57877109434882	2.51566174968534	2.77772001635895	2.64452309699501	2.84459910745729	0.78897746969023	0.302989785250902	1
Merged-chr11-79142202-4	chr11	79141716	79142716	+	885.291626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	4257.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	4.27382353085694	4.08154376122843	4.34179178253952	4.304354572678	4.62125342737758	4.40927659966206	0.599023908972225	0.192590357971982	0.579601410786647
Merged-chr12-26366117-3	chr12	26365599	26366599	+	720.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130981, intron 3 of 4)	intron (NR_130981, intron 3 of 4)	19389.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	2.66297057066872	2.67523697776725	2.71679353648139	2.54588749280397	2.61905581507173	2.46944636834043	-0.76074523821273	0.327947750887214	1
Merged-chr1-92641368-4	chr1	92640881	92641881	+	817.333313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	567.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	7.86841607342073	7.9688717541646	7.86464821870753	8.03382331734024	8.06310665930784	7.52264426956179	0.00440032408384162	0.985854258772062	0.996976572562914
Merged-chr2-157279062-4	chr2	157278561	157279561	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019642)	promoter-TSS (NM_019642)	-37.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	7.29617620215596	7.08836713228692	7.27078312217581	7.03745112745353	6.88440051940028	7.17815143522444	-0.284916786038489	0.249222797655225	0.646143532974884
Merged-chr3-60408937-5	chr3	60408391	60409391	+	906.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63939.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.32881497358813	7.01609613594515	6.52518436612682	6.70087088464735	7.00218366077075	6.83036472160791	0.292583822689184	0.343088782626147	0.731974344882348
Merged-chr13-42527120-4	chr13	42526598	42527598	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-153701.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	5.97260013086465	5.71764908244976	5.76929859778872	6.14069660483289	6.30153214825126	5.50628119827067	0.375062827265763	0.291943733820285	0.689235268138963
Merged-chr5-99386746-3	chr5	99386247	99387247	+	877.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-133820.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.64249517772956	4.40427906160856	4.77759219075191	4.48405362888108	4.49401369419871	4.40325767383423	-0.356531753536145	0.412051958978911	0.784254069324243
Merged-chr3-139062297-4	chr3	139061781	139062781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	12920.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	5.48949196514872	5.52061450774074	5.58734832649637	5.77599756328954	5.68773683129372	5.78102093372102	0.40063184370173	0.200699070755932	0.589951894565287
Merged-chr2-91086538-4	chr2	91086048	91087048	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10130.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	8.07467484142016	7.9892840603414	8.01697970758836	8.05211078774519	8.30599887139712	8.21004813315131	0.237156916094218	0.266009595234729	0.663824402864358
Merged-chr7-49396318-4	chr7	49395811	49396811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	150122.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	5.53090080191759	5.22399657411235	5.16787775777293	4.50559530828719	4.48596779642935	4.53923963807424	-1.82645140313578	5.61783849120354e-06	0.000244098749439198
Merged-chr13-82072240-2	chr13	82071740	82072740	+	627.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	288993.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	2.38927822378972	2.52655002268751	2.52773222996172	2.66099588922822	2.44917385883372	2.66470173658998	0.647014922063082	0.414055316713192	1
Merged-chr4-134552223-4	chr4	134551726	134552726	+	933.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029100)	promoter-TSS (NM_029100)	-60.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	5.35835172004485	5.1352166485608	5.36758127932032	4.84216244222759	4.69846152063149	4.70529198963246	-1.15945171978076	0.00231548075800346	0.0345590175626819
Merged-chr4-155944483-4	chr4	155943988	155944988	+	979.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284312, intron 1 of 7)	intron (NM_001284312, intron 1 of 7)	330.0	NM_001284312	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	7.95734908325592	7.83113343462868	7.78201666956291	8.52081687450115	8.59268761004983	8.08637265786716	0.794883788191978	0.000874641378069216	0.016244901738032
Merged-chr17-71127661-4	chr17	71127150	71128150	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_010867)	TTS (NM_010867)	-55882.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.00839025997773	6.96232985688527	6.92564147371473	6.6685614436909	6.81718503787047	6.66321913641149	-0.377194297674492	0.128092938793664	0.478726071287424
Merged-chr11-97343800-3	chr11	97343261	97344261	+	910.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081220, exon 7 of 11)	exon (NM_001081220, exon 7 of 11)	8312.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	3.13948426918577	2.82934364757569	3.03659039458594	3.01759015536967	2.59116065207106	2.93016197671888	-0.721671944705221	0.343314746630444	0.732198933268765
Merged-chr8-84840701-4	chr8	84840170	84841170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001297607)	promoter-TSS (NM_001297607)	-5.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	7.85369677384394	7.73531215822469	7.74646986063928	7.62689671146706	7.8061064721954	7.55216272230299	-0.155528732928388	0.487737401291129	0.828609859255835
Merged-chr18-65704214-4	chr18	65703848	65704848	+	958.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	6080.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	5.73228607940144	5.9507330882611	6.1509420503009	5.74112632368044	5.53721910169939	5.54063125262024	-0.609436910792995	0.0609987155018615	0.32002403023196
Merged-chr16-92874239-4	chr16	92873719	92874719	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48145.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.11164983588475	5.00380240232343	5.05603674130874	4.87843217253057	4.92390120961617	4.66029101616629	-0.482861421142352	0.20934551578982	0.60080783905906
Merged-chr11-104361917-3	chr11	104361415	104362415	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359634, intron 5 of 14)	RLTR19|LTR|ERVK	80376.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	4.81377399598032	4.71479950233929	4.99554972528396	4.71181929797424	4.59602057318163	4.85214138085468	-0.283320085420864	0.48264828472299	0.825747658710697
Merged-chr14-57891212-1	chr14	57890712	57891712	+	544.0	f1_c57bl6.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-876.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	2.90090069279738	3.49754652701957	3.28836136703993	3.46504929943599	3.28337578021435	3.41683882354408	0.516273136400573	0.457048546051969	0.811993709825292
Merged-chr1-97718645-4	chr1	97718173	97719173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	51419.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	6.55079556318702	6.3262175745008	6.33843097152784	6.19940252963609	6.38880346479664	6.14909498599451	-0.252991103476442	0.370577141131009	0.754883488809214
Merged-chr10-118737264-4	chr10	118736758	118737758	+	733.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	131645.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.12553005597665	3.22671132899416	3.33945669168777	3.38564122729315	3.32218596127273	3.41037390389865	0.574069553807414	0.347502471090982	0.735629954917807
Merged-chr8-31150828-2	chr8	31150331	31151331	+	1000.0	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_103719, exon 1 of 8)	non-coding (NR_103719, exon 1 of 8)	515.0	NR_103719	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	5.72203111536884	5.55670922804756	5.62776294740659	5.89818988201803	6.01358642603833	5.84849356111283	0.52274710538157	0.0886174961415594	0.395166350736101
Merged-chr17-23675015-1	chr17	23674515	23675515	+	1000.0	f1_balb.idr	TTS (NM_013749)	TTS (NM_013749)	-1138.0	NM_001357380	386612.0	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	3.84357408749002	3.91017006418051	4.00385924107573	3.82617500228095	3.8381128036128	4.07123426565204	-0.0235789537489801	0.963106132551797	0.991042187277023
Merged-chr4-141541026-4	chr4	141540521	141541521	+	999.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2424.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	7.2944633074217	6.47933990257311	7.03755783919679	7.06683269756686	7.09750714992734	7.029908323027	0.126360464259203	0.677210198132592	0.912702171725297
Merged-chr17-45567182-1	chr17	45566682	45567682	+	775.0	f1_c57bl6.idr	TTS (NM_008302)	TTS (NM_008302)	3246.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	3.00257728402295	2.9897041901012	3.15111924759686	3.18257579609039	3.1593761979881	3.33324518555729	0.779041174024039	0.228076044233077	0.623077135802944
Merged-chr10-80320572-4	chr10	80320086	80321086	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-38.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	6.16364685853483	6.36496163354306	6.56489153859257	6.7055732736128	6.68232671802954	6.44773724891518	0.415629743087763	0.13950218901008	0.499084106249493
Merged-chr6-86401268-4	chr6	86400771	86401771	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2948.0	NM_001164079	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	6.48370678176537	6.129449817532	6.22664592317773	6.25290211676015	6.24991419493584	5.86562142967923	-0.242477443951898	0.429782553542281	0.795863007201232
Merged-chr3-57740053-4	chr3	57739554	57740554	+	800.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	3997.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	3.8015059752686	4.11950053583516	4.37222464828789	3.96922767098677	3.82114007914835	4.05477972537568	-0.48290206510156	0.360134097912849	0.746426493776026
Merged-chr11-100860373-4	chr11	100859845	100860845	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164062)	promoter-TSS (NM_001164062)	-139.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	6.01927929541525	6.14912932362739	6.20323299877494	5.86336155797465	6.10975310693897	5.74978922403547	-0.331878314023549	0.277366941065464	0.674572485083889
Merged-chr14-31596660-4	chr14	31596173	31597173	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-19290.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	6.17054068256616	6.10653669394333	6.23290976357929	6.86623122424449	6.87803328408218	6.49069230905127	0.970096739226493	0.000471181880448116	0.0100416542391311
Merged-chr1-86526530-4	chr1	86526042	86527042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360831)	promoter-TSS (NM_001360831)	-15.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	7.82376558290617	7.81136895181937	7.57071252590164	7.69837435057651	7.73387889576836	7.77387199558572	-0.0173088478590845	0.937953550164777	0.986216627099055
Merged-chr12-34673759-1	chr12	34673259	34674259	+	701.0	f1_c57bl6.idr	intron (NM_001271386, intron 3 of 27)	B3|SINE|B2	-144870.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	5.28949029498896	5.75571474968399	5.51468740163835	5.70342255011778	6.08150590011603	6.03127876650588	0.746088901662209	0.0301004500274629	0.209475357108058
Merged-chr16-76283897-1	chr16	76283397	76284397	+	741.0	f0_c57.idr	Intergenic	Intergenic	89152.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.67619824771149	2.72518758176765	2.67763177563396	2.76143728088262	2.61678812192156	2.81286940240642	0.184467938854463	0.80213522437342	1
Merged-chr3-121292677-2	chr3	121292177	121293177	+	601.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	937.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	6.73391669303531	6.77885847483418	6.65677368623553	7.22386003252775	7.31297182383887	6.89145963011844	0.669822391738638	0.00976180307850933	0.0988752416989171
Merged-chr3-89281794-2	chr3	89281294	89282294	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-843.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	3.39294339565244	3.10364094716548	3.17731912163513	3.24588388019784	3.09156327669588	3.00389864104307	-0.480085726831044	0.468567523691729	0.818673566064062
Merged-chr4-155891412-2	chr4	155890912	155891912	+	981.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	350.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	5.05393519053638	5.27539236454087	5.37461145231082	5.08059192495668	5.14789469022143	5.15904796096607	-0.216788313854056	0.547893645682558	0.859455567919717
Merged-chr14-17904587-6	chr14	17904183	17905183	+	757.4365230000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-76961.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.13799935617631	4.41313780768784	4.34720638583805	4.56589781357115	4.63257196905262	4.81169082516031	0.913374826956164	0.0383713040164969	0.242484959717831
Merged-chr10-80676050-4	chr10	80675556	80676556	+	953.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021462, intron 1 of 13)	CpG-1308	237.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	5.97960343132851	5.57852813556396	5.62839911364056	5.73375967556624	5.72253874523291	5.69102544912759	-0.0559041332973101	0.863970379391877	0.968269312109804
Merged-chr16-30395302-4	chr16	30394778	30395778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-6748.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	5.34390516796674	5.20535092511405	5.45098989594541	5.26355288997128	5.13279741092343	5.54044836644476	-0.0409551328093994	0.909160149663866	0.979384717565381
Merged-chr6-146221516-5	chr6	146221035	146222035	+	838.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280688.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	5.67896531398869	5.67429738483134	5.22703673311803	5.42993349056342	4.96614237396022	4.8264840450722	-0.879758797041436	0.0284815152549449	0.202071105161448
Merged-chr17-67246087-4	chr17	67245641	67246641	+	845.1041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357625, intron 1 of 32)	MER2|DNA|TcMar-Tigger	108318.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.33207033484602	5.45895503690056	5.3549059295444	6.25794908326808	6.47787857507055	6.44036300947695	1.78383268568536	5.86435440505956e-09	5.59697295920119e-07
Merged-chr11-118145935-4	chr11	118145429	118146429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16710.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	8.57545714966663	8.62817190412432	8.03015164116689	8.12373420552305	8.51698900523492	7.89149953813235	-0.324401798186457	0.247645924129183	0.644638139008226
Merged-chr11-115071958-4	chr11	115071543	115072543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10004.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	8.0191466435997	7.69833318982821	7.58390667759677	7.51152939849291	7.75541975548982	7.73293366590126	-0.165196435694136	0.500590132884637	0.83513356465285
Merged-chr10-111506440-4	chr10	111505922	111506922	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	136.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	5.69236880923325	5.32739429013949	5.22169118175351	5.24714758981453	4.93467623460423	5.31834235241117	-0.541354092307185	0.153273179758428	0.522110330345248
Merged-chr16-24393074-7	chr16	24392641	24393641	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178665)	promoter-TSS (NM_178665)	-209.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	7.68673759489928	7.64210703242872	7.53744791965073	7.63116592808689	7.22802099895787	7.38655226894713	-0.29529573428432	0.221303090912272	0.615817924842094
Merged-chr11-72607190-4	chr11	72606665	72607665	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025985)	promoter-TSS (NM_025985)	-96.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	7.50094400858945	7.82563923156809	7.74770121795902	7.611918006341	7.567019727261	7.77911843676512	-0.0678259411134652	0.772151961126924	0.943680976839558
Merged-chr15-30617073-4	chr15	30616584	30617584	+	984.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355502, intron 3 of 21)	MLT1B|LTR|ERVL-MaLR	-422042.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.12741716012687	4.27321925159972	3.86660332465304	3.84682052621279	3.94824658721529	3.93749796358644	-0.585038773636751	0.252344030797315	0.649830747012104
Merged-chr13-21200655-4	chr13	21200152	21201152	+	992.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	20721.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	5.20903604294817	5.55694544389287	5.02111740654311	5.11353953168665	5.13276496870468	5.44398071487966	-0.127654410152572	0.740119227189258	0.934498753638558
Merged-chr6-114045116-4	chr6	114044610	114045610	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3030.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	4.04310780845625	3.71795059665715	3.96986539720903	3.71617901049788	3.76724613770901	3.99116704443377	-0.288437584016873	0.587699842307606	0.876033486335519
Merged-chr1-130462608-4	chr1	130462122	130463122	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_010016, exon 1 of 10)	exon (NM_010016, exon 1 of 10)	122.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	5.01920061264463	5.09428919889666	4.5660986290933	5.570076733187	5.36198562038738	5.27132032907696	0.981059142282006	0.0145646066999397	0.129947651113937
Merged-chr2-166046515-3	chr2	166046053	166047053	+	837.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	53916.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.8474529947903	4.48463714345128	4.75523778095144	4.5583309055148	4.56550269470269	4.45317666936411	-0.413251923326094	0.333475908255647	0.724434307441351
Merged-chr3-95628624-2	chr3	95628136	95629136	+	610.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_019561, exon 3 of 4)	exon (NM_019561, exon 3 of 4)	3656.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	3.38426017916881	3.32312185753912	3.4125497463282	3.36577141252817	3.15403383290757	3.31688245358302	-0.378718902568093	0.534481411783663	0.853068627162717
Merged-chr2-104493608-4	chr2	104493106	104494106	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010434, intron 1 of 15)	CpG	883.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	8.74420778623535	8.73317841942715	8.65441331553144	8.71725360941762	8.54013916800195	8.80166352746991	-0.0345918361608501	0.865217566878376	0.968631249633983
Merged-chr2-129629771-2	chr2	129629250	129630250	+	987.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001291019, intron 7 of 7)	intron (NM_001291019, intron 7 of 7)	34288.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	4.12699700795549	4.15860923917706	4.52321661046784	4.08138166018947	4.25328974411384	4.34922678672471	-0.111181960611397	0.816909639172708	0.956754861188725
Merged-chr4-149462780-2	chr4	149462280	149463280	+	780.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7812.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	3.58697841760069	3.51954116300849	3.11985767265341	3.63946446358485	3.41770229177923	3.7172872975847	0.588812256118282	0.364788258349714	0.750028369485675
Merged-chr1-37487159-4	chr1	37486672	37487672	+	994.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	1433.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	6.51455546446477	6.55488798672145	6.52878611069421	6.54007569157682	6.73349448371112	6.78135575015997	0.245692876151645	0.344195171546838	0.732962886678335
Merged-chr15-73627033-2	chr15	73626533	73627533	+	733.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2289.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	3.19944888912	3.0266296704703	3.28201560394058	3.33107119433003	3.18075940134492	3.35315140613748	0.490245153588719	0.439296841059767	0.801067055524026
Merged-chr5-17880064-4	chr5	17879569	17880569	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	8890.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	5.85178265943589	5.83881076876846	5.68793103557547	5.65341763386205	5.78268692408324	5.5819914783198	-0.213051478644871	0.495615494221504	0.83254120142987
Merged-chr17-34707869-1	chr17	34707369	34708369	+	749.666687	f1_balb.idr	intron (NM_031176, intron 16 of 32)	RMER15-int|LTR|ERVL	36028.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	2.50362223007196	2.66697138955786	2.5807733760022	2.68707111082157	2.82779268284146	2.78107046140212	0.996189944598713	0.190128177897593	1
Merged-chr6-122566914-2	chr6	122566414	122567414	+	627.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13105.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	4.52526815231134	4.53434846458245	4.53353190614251	4.81998852247589	4.76466201304141	5.0446262387596	0.80099853275986	0.0491926411544829	0.281882878946506
Merged-chr6-4978432-4	chr6	4977898	4978898	+	968.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75078.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	6.00187816770648	6.30968123643203	5.99722108229082	5.93897211466683	6.04694782972118	5.5426812808095	-0.418019319101691	0.203555015041979	0.593586797911718
Merged-chr4-141031930-4	chr4	141031432	141032432	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	21295.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	3.0333408884391	3.05435614380192	3.22164364023211	3.20890647496861	3.42520497502365	3.40333135337623	1.05203683774845	0.0985577530785545	0.41862141491375
Merged-chr19-12833323-4	chr19	12832814	12833814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361971, exon 9 of 9)	exon (NM_001361971, exon 9 of 9)	-28463.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	6.99216411899703	7.27590187819177	6.97346241420064	6.53311548841382	6.99286039943827	6.8306560292335	-0.440523677770233	0.109729397432643	0.442748700493424
Merged-chr8-25034760-4	chr8	25034261	25035261	+	852.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081187, intron 3 of 8)	B2_Mm2|SINE|B2	4201.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	2.52743447297536	2.42076578884755	2.79916803841782	2.34584997516477	2.63537359532453	2.6959448827818	-0.120321328468686	0.885283801384526	1
Merged-chr8-36758710-2	chr8	36758209	36759209	+	682.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-25655.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.35641709429765	2.49826416642829	2.50017110032732	2.17359633908965	2.24936914078972	2.38454182902251	-1.23839018487106	0.152249743754381	1
Merged-chr17-45582972-4	chr17	45582480	45583480	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	9413.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	6.48876940720299	6.18793930242426	6.56007727513413	6.71356956230681	7.0029125826203	6.39887161517661	0.517889736841239	0.0872520260507346	0.391631599073769
Merged-chr10-34248693-2	chr10	34248193	34249193	+	983.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33497.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	3.46167743259597	3.6195388811779	3.60473072940883	3.7471805968026	3.39132697788286	4.05497136562328	0.633946533885952	0.292285426895481	0.68951252554772
Merged-chr13-111490473-1	chr13	111489973	111490973	+	1000.0	f0_c57.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	-346.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	8.38188120112737	7.82893840594589	7.79145275379061	8.1304447819251	7.78362840330789	7.72284692929769	-0.202322507620231	0.460909331734054	0.814802506471053
Merged-chr17-28720926-3	chr17	28720412	28721412	+	956.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	intron (NM_001168513, intron 3 of 11)	28344.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	4.79921487893554	4.16627198932751	4.2720929976437	4.38454713215688	4.12981963028447	4.47379250525355	-0.306224513734457	0.540607466589413	0.856401971110652
Merged-chr7-45080804-2	chr7	45080304	45081304	+	680.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	11409.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	4.44356589576948	4.45943308673671	4.45483240532522	4.01398787174978	4.31385741160473	4.59994115135054	-0.333475850762475	0.479881032248019	0.824391932626821
Merged-chr4-155891783-4	chr4	155891278	155892278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	-16.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	6.38570539445574	6.87172288539912	6.6825056157052	6.81722066231242	6.94102022280688	6.75724538713586	0.283074373506896	0.307553298356249	0.70366516854451
Merged-chr4-134854936-2	chr4	134854436	134855436	+	662.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1591.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	4.0214832837822	4.07065779856229	3.94684224319162	3.87336615023471	4.25856503262247	4.06588936000035	0.191891584114953	0.702875081825024	0.922010618774232
Merged-chr11-106478093-2	chr11	106477593	106478593	+	650.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	9703.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	3.01005094809306	3.26139750000596	2.97197195333745	3.14650821261152	3.18548035452259	3.28282965753659	0.47100479332646	0.477887508854266	0.823464515587694
Merged-chr11-54989862-2	chr11	54989362	54990362	+	576.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 19 of 24)	intron (NR_138556, intron 19 of 24)	-26922.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	3.9399336488428	3.89436143399375	4.39287269678061	3.99119605334751	4.27705715020112	4.16354199489968	0.194773759799282	0.705134344969184	0.92270290989203
Merged-chr4-59438195-4	chr4	59437681	59438681	+	946.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163288, intron 1 of 16)	CpG	452.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	7.06699468096925	7.51893386684385	7.3800726321057	6.81340111394311	6.58952334579991	6.44029221697249	-1.08105188561373	9.1260244085196e-05	0.00262844665622741
Merged-chr11-59528635-2	chr11	59528135	59529135	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MER31A|LTR|ERV1	-12934.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	3.64054801535586	3.25680965678649	3.62761760764202	3.47219190778398	3.22255373141396	3.5955442367566	-0.312858575774266	0.615722179266831	0.888074381910808
Merged-chr7-27544467-1	chr7	27543967	27544967	+	762.0	f1_balb.idr	intron (NM_001317355, intron 2 of 13)	B1_Mus2|SINE|Alu	8751.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	3.48124379015634	3.34305944105915	3.26614149264111	3.26555731065627	3.3161187117947	3.45053915601335	-0.109594936964043	0.856670696655768	0.966560323116284
Merged-chr12-55821099-4	chr12	55820590	55821590	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_019994, exon 1 of 41)	5' UTR (NM_019994, exon 1 of 41)	426.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	5.71871083927764	5.66249131679245	5.95557883395131	5.82298617605144	5.57302455972339	5.72871186622721	-0.123948885438029	0.698449484696613	0.920345237083715
Merged-chr9-13574342-4	chr9	13573854	13574854	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-45635.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.37961220950384	5.31191648001092	5.33255938541721	5.0704645334184	4.853329157002	5.30510210777312	-0.550202416184814	0.134657531032462	0.490482570572103
Merged-chr19-45749269-5	chr19	45748724	45749724	+	988.313416	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008723, intron 1 of 5)	CpG-7591	339.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	4.37584046932278	4.14954386945824	4.35963844430041	4.39753127118845	4.37539514718508	4.14926805057766	0.062266775305681	0.892611270679507	0.975146620821922
Merged-chr15-99388244-4	chr15	99387797	99388797	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4650.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	6.71821078879993	6.50586470411707	6.49053808808956	6.39656204793378	6.31937995893784	6.40265548259072	-0.338980474215754	0.206113319155379	0.596801233959034
Merged-chr10-62508612-4	chr10	62508061	62509061	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-804.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	8.1331972944082	8.48032094449015	8.24552157442342	8.20108305311685	8.35079313117509	8.17739936634062	-0.0682035441475278	0.759070034198647	0.940311236380535
Merged-chr7-29768485-4	chr7	29767977	29768977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-75.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	6.84197945492372	7.39644395237489	7.42907642951258	7.10516513430382	7.34820538850548	7.40492875585439	0.0663436837357274	0.812655725451071	0.955699295706164
Merged-chr4-12084150-4	chr4	12083687	12084687	+	947.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	3770.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	6.13267913063722	5.97682282735509	6.06858185735181	6.23989854825797	6.38690630737057	6.58220826234604	0.575919905382426	0.0444892079701043	0.265804409907118
Merged-chr11-95729123-3	chr11	95728624	95729624	+	854.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5538.0	NR_028263	320616.0	Mm.428140	NM_177209	ENSMUSG00000075596	B130006D01Rik	-	RIKEN cDNA B130006D01 gene	ncRNA	4.87015142034097	5.20760124666778	5.56322851529777	5.99481916479559	5.72389361627342	5.54224228669563	1.02509318027521	0.00736360621468908	0.0811000590220846
Merged-chr11-117878418-3	chr11	117877935	117878935	+	949.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4909.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	6.81662442639843	6.58580220823755	6.36219943788293	6.59683042554463	6.40914608517754	5.79198389358227	-0.46046793803044	0.175046570039959	0.554761950100357
Merged-chr4-33261094-2	chr4	33260594	33261594	+	714.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-12307.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	3.11281836033142	3.2012000419348	2.9464940081122	3.14375280717697	3.43412914239347	3.32328858784282	0.883629257013465	0.185379971316818	0.569470877644115
Merged-chr17-27825107-4	chr17	27824601	27825601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-4559.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	6.93566041133267	6.99251966610071	7.04841077417503	6.97136035170623	7.26505091755878	6.97177478997348	0.14479381699866	0.562860618923545	0.865755360453189
Merged-chr11-50287899-2	chr11	50287399	50288399	+	705.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	4437.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	3.54917543622873	3.37578554948321	3.67424645935307	3.71114436492903	3.48264204159927	3.79305759357398	0.454100070516746	0.430700049753724	0.796522076517126
Merged-chr12-72389056-1	chr12	72388556	72389556	+	771.0	f0_c57.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	19998.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	1.99180530201355	2.09478349592916	2.03269679570962	2.4001137814884	2.21874738307025	2.57240617540875	2.78980109582247	0.00642561567566845	1
Merged-chr10-110920109-4	chr10	110919642	110920642	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007792)	promoter-TSS (NM_007792)	-34.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	6.48592979859412	6.85964621740109	6.3174997821453	6.07963780752411	6.10089194188464	5.81224355273055	-0.944527993636366	0.00241782157017595	0.0357593489532884
Merged-chr13-60728644-2	chr13	60728144	60729144	+	964.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 15 of 26)	intron (NM_134062, intron 15 of 26)	57720.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.00429759752608	2.60067604723206	3.02784677137106	2.49401747208672	2.37476687027152	3.09994471404976	-0.777760018924601	0.583240428732174	0.87400013033251
Merged-chr11-116624295-4	chr11	116623795	116624795	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-43.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	7.86632164994994	7.77505069161045	7.77639257059778	7.57890331767833	7.51412547971062	7.44586958272348	-0.422052125749628	0.0529006662910696	0.294589656053227
Merged-chr2-91965048-4	chr2	91964542	91965542	+	930.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1479.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	7.92117026844129	8.10348794383035	7.74550383015329	8.07541295992203	8.43641327044973	7.801855864678	0.288624953590684	0.271463889754728	0.66881731971431
Merged-chr11-120352807-4	chr11	120352274	120353274	+	969.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4096.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	7.65924143679054	7.72608270750506	7.86569155787551	7.26639670192527	7.55112369073557	7.53257724523188	-0.425037933220493	0.0689246225605506	0.343561971725771
Merged-chr7-127471376-4	chr7	127470874	127471874	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-240.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	8.04738198819722	7.7238199920396	7.92054111753023	7.86180170532109	7.9585541320885	7.99179429478116	0.0485572722367856	0.828531229639719	0.959833682782168
Merged-chr2-59160757-4	chr2	59160253	59161253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	-70.0	NM_001362394	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	7.60703808134102	7.52468012221925	7.41223756847491	7.56907852237176	7.66195481682944	7.43691067773875	0.0640302080937032	0.779331893340564	0.945710994231145
Merged-chr2-153172077-2	chr2	153171577	153172577	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	10776.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	4.42598349521712	4.03567187342078	4.24367691878032	4.34294308146289	4.33593654864032	4.17054414508326	0.119537558733943	0.801208832307135	0.952855483055893
Merged-chr12-17546543-2	chr12	17546043	17547043	+	715.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013614, intron 1 of 11)	intron (NM_013614, intron 1 of 11)	1670.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	2.84476134515203	2.96152381328081	2.93309127418503	2.91734969413553	3.32304589564867	3.12621022984237	1.02311922035281	0.142444990346762	0.503787601222075
Merged-chr2-158179679-2	chr2	158179179	158180179	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12329.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	5.41544643956259	5.31094059037127	5.11691896901838	5.13798958612044	5.19205242033887	4.79396480834752	-0.465631449016743	0.220510220666266	0.615020847852445
Merged-chr4-44169327-4	chr4	44168816	44169816	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1033.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	4.938290799515	4.87488561511509	5.43230750407392	5.35992804370727	5.39444992242015	5.41010000945747	0.605369484018757	0.110170289149387	0.443473920929912
Merged-chr15-58933777-4	chr15	58933269	58934269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175151)	promoter-TSS (NM_175151)	-39.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	8.19281791959302	8.44600607977736	8.20796359923153	8.07723766588341	8.32785991539621	8.08643701760579	-0.163502823401969	0.46394659102419	0.816058961530106
Merged-chr11-22859130-4	chr11	22858697	22859697	+	978.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001169114, intron 1 of 1)	CpG	538.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	7.6774484786414	7.67548672967525	7.56541756017356	7.65895041928634	7.81396390843192	7.57308450349331	0.0701928298668768	0.753875030928078	0.938570691167124
Merged-chr9-119265702-6	chr9	119265216	119266216	+	917.861084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34024.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	5.54922322139687	5.44416398860643	5.63280052761816	5.46086073792609	5.43814741320064	5.58787892258051	-0.0901887491086878	0.782323139672264	0.946484752418558
Merged-chr6-129235227-2	chr6	129234727	129235727	+	910.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_040268, intron 2 of 3)	RMER17C|LTR|ERVK	2818.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.11484132789872	6.94612073514349	7.34271506589537	7.05757241167302	7.35574115535967	7.44096379639433	0.233527291864377	0.371755406099873	0.755825969975854
Merged-chr12-72665238-2	chr12	72664728	72665728	+	756.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	-400.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	5.73462690711402	6.16257150708512	6.06418525973351	5.82975866910607	6.1984057756057	5.8674563492761	-0.0216926675028045	0.946974016503966	0.988007649185823
Merged-chr8-84968758-4	chr8	84968255	84969255	+	905.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-867.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	5.36687536163337	5.27288665177689	5.90987976902955	6.18456910443712	6.19394835966199	6.3699645970857	1.27595561444	0.00017651888007464	0.00452349337026506
Merged-chr8-43441346-2	chr8	43440846	43441846	+	607.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	86791.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	2.6212600897196	2.58195171487453	2.55393163021358	2.70449102043909	2.64117728276904	2.75356457818808	0.619092406201831	0.409563553352911	1
Merged-chr13-112799979-4	chr13	112799508	112800508	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-769.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.31825384656519	6.40248227754066	6.22222057012213	6.44366324400307	7.02222943878244	6.79660850862521	0.737380669852046	0.0120442427784692	0.114560739953231
Merged-chr6-122650755-4	chr6	122650253	122651253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24329.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	7.50947296380523	7.57563504751391	7.54294768614834	7.56396005498002	7.80542290476347	7.56051560590551	0.162326036034293	0.474835969639326	0.821690195527599
Merged-chr1-55809377-1	chr1	55808877	55809877	+	593.333313	f0_c57.idr	Intergenic	Intergenic	-121864.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	3.98477631719964	4.1588984208827	4.03488556826888	4.41331263877291	4.60474212811279	4.74421284694279	1.39410313635832	0.00277930107764184	0.0397013019859952
Merged-chr5-115157363-2	chr5	115156863	115157863	+	844.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	813.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	6.35397972369468	6.30915607229081	5.91514615115011	6.21249248859072	5.97761404954939	5.84702917900156	-0.327401830357962	0.295913419362582	0.692709629999205
Merged-chr2-94147793-2	chr2	94147293	94148293	+	639.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019657, intron 1 of 10)	RSINE1|SINE|B4	10116.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	3.14542754500986	2.98141712747186	3.04524223889356	2.8618321708668	2.94621525177609	3.05873201261843	-0.486172498506236	0.472858954005264	0.820550293768681
Merged-chr19-12464346-4	chr19	12463860	12464860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3581.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	8.55543650621777	8.80528474032456	8.28121412559249	8.35596347319429	8.4823841343834	8.0735305743827	-0.347344962277424	0.160819789378813	0.533531080683875
Merged-chr6-91735379-2	chr6	91734879	91735879	+	600.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 6 of 14)	intron (NM_009320, intron 6 of 14)	51312.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.02415988317069	1.99378763141052	2.30125420670831	1.90056322832805	1.85310762732513	2.25116585164784	-0.754806556307823	0.449361024607434	1
Merged-chr15-3259304-4	chr15	3258793	3259793	+	962.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11474.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	4.37762229286896	4.53962150842637	4.48321895183448	4.11645650574439	4.05285043095568	4.2489107680043	-0.903975537826919	0.0476112471464232	0.276380399927416
Merged-chr17-28716323-3	chr17	28715816	28716816	+	730.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168513, intron 3 of 11)	MTE2a|LTR|ERVL-MaLR	23748.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	3.17178429987292	2.99809173869382	3.16281550695697	3.15257112971922	2.97039139703177	3.44924475828155	0.366507954305979	0.586495943720523	0.875566335987149
Merged-chr5-124037094-4	chr5	124036600	124037600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4840.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.48945264381858	5.31356293123136	5.18998741686454	5.41084648054024	5.64248109773236	5.44727304926068	0.324114002796511	0.347567914725035	0.735652974422286
Merged-chr18-53256377-4	chr18	53255892	53256892	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029394, intron 1 of 6)	L1MC5|LINE|L1	10730.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	8.59833462921851	8.83841411783744	8.13336283142545	8.0941106966742	8.40508401162838	7.62119257402601	-0.658385332903598	0.0285229401629906	0.202279322785198
Merged-chr14-63126036-3	chr14	63125524	63126524	+	864.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007798, intron 1 of 9)	B4A|SINE|B4	3562.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	7.73046867013824	8.35687624166165	7.6991934001051	8.30429061638017	8.45065168477515	7.88066296716064	0.373290898648542	0.200484052187919	0.589534586226654
Merged-chr13-94467163-3	chr13	94466679	94467679	+	920.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009680, intron 15 of 26)	intron (NM_009680, intron 15 of 26)	108219.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	4.24977116277858	4.10165203651393	4.55765211257937	4.21555309137897	4.16316873049794	4.50831802199288	-0.0289031375728992	0.95220577280684	0.989068549972429
Merged-chr18-65695567-4	chr18	65695068	65696068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2700.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	7.71860490784412	7.82451015593013	7.30440299945986	7.39070305709701	7.53459378666348	7.1070597324868	-0.406300213792441	0.130197413823284	0.482452300574832
Merged-chr4-139131089-4	chr4	139130586	139131586	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	27.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	7.59633946861771	7.65464764489243	6.96932364812908	7.63118996806869	7.39357032128654	7.04242154479977	-0.0996324496228969	0.741753639150841	0.934950719642245
Merged-chr1-186579623-2	chr1	186579123	186580123	+	626.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20942.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	3.1843001019001	3.43371587238442	3.53448155400761	3.44258509370169	3.69554204650442	3.60470157106304	0.736405353613548	0.221656275749496	0.616470866788024
Merged-chr16-87675868-1	chr16	87675368	87676368	+	668.0	f0_balb.idr	Intergenic	Intergenic	-23086.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.41811535344369	3.32890399785041	3.49468820292845	3.26565316395591	3.05304640783827	3.23534244404827	-0.944712801614357	0.132044896587255	0.48602989273787
Merged-chr3-121545661-4	chr3	121545172	121546172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-13328.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	4.00822670513525	3.77118828092911	4.07208129463191	4.05026035572679	4.05235989110792	3.73318273185378	0.0293275473597868	0.955516652444956	0.989763164889919
Merged-chr19-61229570-1	chr19	61229070	61230070	+	543.0	f1_balb.idr	Intergenic	RMER17A|LTR|ERVK	-1152.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	4.13059591706972	3.98848275123898	3.75998921751518	3.95825438571309	4.10391399747173	4.08874550801954	0.221118026203345	0.664405215459831	0.907585158243155
Merged-chr17-26095438-4	chr17	26094946	26095946	+	850.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019731)	promoter-TSS (NM_019731)	24.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	3.94525304163689	3.86747582774494	3.76436659338965	3.70136972321533	3.77518734672415	3.67337542360489	-0.467410287792868	0.376674706565463	0.759336465825071
Merged-chr4-129818899-4	chr4	129818445	129819445	+	975.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1534.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.15429214200103	7.19475180095338	7.59091643537893	7.09596137069837	7.50858308985994	7.54712297276257	0.115252583975373	0.672033530572106	0.910719060610024
Merged-chr19-4012845-4	chr19	4012372	4013372	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133666)	promoter-TSS (NM_133666)	-117.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	6.29505779466166	6.34781680314664	6.0252788929473	6.3532096509631	6.31977285221744	5.77193755305436	-0.0832061850580207	0.796130146189907	0.95140420098761
Merged-chr11-73131210-4	chr11	73130726	73131726	+	891.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361245, intron 22 of 30)	intron (NM_001361245, intron 22 of 30)	7068.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	4.39163485646525	4.09027489933236	4.29334782561992	4.2183793190339	4.14332674476066	4.08110226804496	-0.310070533608905	0.51257082086538	0.842036541481245
Merged-chr4-115828492-4	chr4	115827998	115828998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	406.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	7.51212010033672	7.40268528683056	7.83712907246829	7.32525455962574	7.46325201143637	7.52289232132483	-0.221908366531147	0.368267923508317	0.753265422302852
Merged-chr11-46785177-3	chr11	46784659	46785659	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1B|Other|Other	-25640.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	2.73769501574927	2.7016193155922	2.72706848329574	3.44887575595585	2.89249710237006	3.1235153216349	2.23072555994155	0.00366947689714437	0.0488151702639211
Merged-chr12-24710331-4	chr12	24709835	24710835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	2081.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	5.25291831128946	5.44972906118331	5.1456654784166	5.27106270357204	5.59264807492527	5.31192060672506	0.221405607113788	0.537146066961707	0.854311531235259
Merged-chr15-99124052-2	chr15	99123552	99124552	+	651.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur3|SINE|Alu	-2793.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	2.56597872183142	2.38613033248702	2.89591650166588	2.48686720819004	2.16924080596826	2.4253518764628	-1.62886442110124	0.074940898445475	1
Merged-chr11-55131598-2	chr11	55131098	55132098	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172258, exon 8 of 11)	exon (NM_172258, exon 8 of 11)	20108.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	3.57763329868003	3.46434123558997	3.37351756934691	3.56028957248318	3.5155236690496	3.44564832570033	0.1135938834569	0.844437414542694	0.96373428957366
Merged-chr3-144718730-4	chr3	144718226	144719226	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1609.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	8.34505923728007	8.59959419651019	7.89067935801974	8.59374501319564	8.95551148375982	8.41528813581303	0.500203538664924	0.0715563731203381	0.350858143464767
Merged-chr15-75857266-7	chr15	75856824	75857824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5015.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	7.51186586247117	7.37986383152037	7.46997832764766	7.61035184288772	7.57751619353262	7.58601149001158	0.200201714021563	0.364156324512758	0.749591060783653
Merged-chr10-50691200-2	chr10	50690700	50691700	+	978.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_198007, intron 14 of 41)	Lx3A|LINE|L1	98531.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	3.00427986968886	2.98538052814262	2.89337980367054	3.15733931448564	2.89850353452286	3.36875255060926	0.822861347396581	0.238540754596975	0.635276123846678
Merged-chr6-70790500-3	chr6	70789983	70790983	+	948.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1692.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	2.26853834112704	2.09584129115722	2.14531038660347	2.28961805720475	2.19219839160576	2.53601967983768	1.18829681693946	0.187186715949983	1
Merged-chr17-15527345-4	chr17	15526867	15527867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008799)	promoter-TSS (NM_008799)	-66.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	5.68153849972207	6.03633830758776	6.02665459188022	5.85450147224927	5.66297940553713	5.83261825477056	-0.251480587248736	0.428789731616196	0.795498170360422
Merged-chr6-91715220-4	chr6	91714715	91715715	+	943.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	31148.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.9191608376405	6.96940139028902	7.14751629725501	6.95526776405778	7.22445120093367	6.98702350559017	0.088913683632968	0.723710297998872	0.929128417950564
Merged-chr7-128737473-2	chr7	128736973	128737973	+	719.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2956.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	2.99983263033133	3.18873575503952	3.39675455499578	3.1723726159664	3.29332942952924	3.00849037393066	-0.129813001967623	0.84753674790443	0.964318271116593
Merged-chr11-50038980-4	chr11	50038499	50039499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	13668.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	5.3197488002725	5.36968604178049	5.60439808956464	5.4961819087738	5.57372980396014	5.71743486557113	0.318403125611816	0.339423553386407	0.729251186770858
Merged-chr8-120744633-2	chr8	120744133	120745133	+	897.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	5994.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	7.47737223122961	7.54385739811472	7.55272973990759	7.29709781493041	7.51469602004825	7.1562423386122	-0.268859204045415	0.259823159847361	0.657403317052218
Merged-chr2-3356628-2	chr2	3356128	3357128	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	9941.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	4.1226036319839	4.13072282629755	4.56334629028877	4.24863580185796	4.17641645384927	3.97158462192858	-0.371537184163833	0.4560341888505	0.811290789059103
Merged-chr5-101938743-4	chr5	101938251	101939251	+	887.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	131170.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	4.78828678159466	4.48465431285781	4.45175815114651	4.93959550849285	4.68054740945686	4.52083872819865	0.328282714301908	0.452503927066182	0.809456767794566
Merged-chr10-120977993-4	chr10	120977496	120978496	+	960.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	1334.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	4.63244091279292	4.45474360700406	4.38464706462908	4.34481338209865	4.43461129041947	4.16729592239958	-0.434730744575245	0.336305550013584	0.726311051846196
Merged-chr1-157427119-3	chr1	157426626	157427626	+	929.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14531.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	2.92964714218572	2.88324391789098	3.05722723845263	2.76995737431893	3.18217389716307	2.89012015198049	0.0524743886768131	0.942141363162938	0.987097394617189
Merged-chr11-69120679-1	chr11	69120179	69121179	+	584.0	f1_c57bl6.idr	intron (NM_033041, intron 1 of 3)	intron (NM_033041, intron 1 of 3)	226.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	3.93811223879281	3.65563585278961	4.03420993787646	4.13275858606486	4.27984646681916	4.10317697017613	0.88962500605535	0.0807234359111925	0.375953974313704
Merged-chr5-124021328-4	chr5	124020829	124021829	+	896.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	10931.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	6.39983379501455	6.46040148663812	6.3696097734045	6.69935728059823	6.56639248438952	5.8998570883997	0.0565856908054907	0.861238457172701	0.967789299492425
Merged-chr15-27702967-4	chr15	27702509	27703509	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21467.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.96607583004496	7.16893762616991	6.84296752792912	6.71781376228668	7.03049823452007	6.79422645649043	-0.221649876714491	0.401483703210659	0.777568046382993
Merged-chr9-45547335-3	chr9	45546820	45547820	+	885.944458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-116088.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	3.36497581461342	3.2476225385275	3.43121257571929	3.97287320275899	4.06061920821497	3.83635567860425	2.23941379693124	0.000125249313988719	0.00343159200473275
Merged-chr15-52712379-4	chr15	52711881	52712881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027212)	promoter-TSS (NM_027212)	-64.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	5.42322669347118	5.65190095590537	5.48364887330223	5.62694277749143	5.37650822232354	5.3954815738233	-0.105792488058442	0.753393890435115	0.938549578325581
Merged-chr15-79692109-2	chr15	79691609	79692609	+	563.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013818, intron 1 of 11)	MIR|SINE|MIR	1213.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	3.18000754277396	3.00342001842685	3.15061415602574	3.44850096880938	3.48885887708874	3.45318831166034	1.45983075221816	0.0203854959176016	0.163461149109742
Merged-chr5-26537909-4	chr5	26537423	26538423	+	901.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44609.0	NR_029445	75942.0	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	2.06278184783025	2.06065240003131	2.19283217000708	2.03150223909262	1.86734182106437	1.85943897410283	-1.5265033722842	0.125611317288735	1
Merged-chr6-110080927-4	chr6	110080407	110081407	+	796.708313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-564605.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	2.77676110931208	2.8713607636334	3.02041312540835	3.13427566097943	3.14393950992961	2.90982967029348	0.864503960842349	0.214950625447862	0.608170317702451
Merged-chr9-119266192-1	chr9	119265692	119266692	+	671.0	f0_balb.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34500.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	5.3293359785281	5.29592016087911	5.61258383943416	5.27004229442704	5.17013301858256	5.59710506865626	-0.127821693142755	0.723751741555918	0.929128417950564
Merged-chr6-120037578-2	chr6	120037078	120038078	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1077.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	6.94807983452749	7.29373608984864	7.18228554149559	6.8931409457623	6.96999456148598	6.91453081351318	-0.33673812747185	0.179755335530853	0.561276907469273
Merged-chr17-29034778-2	chr17	29034278	29035278	+	995.333374	f1_balb.idr|f1_c57bl6.idr	intron (NR_036613, intron 1 of 6)	B2_Mm1a|SINE|B2	2118.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	4.95087867373624	4.7373215203427	4.95751683463776	4.96774531812013	4.82078358286994	4.87770827924239	0.0150988816016866	0.968847027023741	0.992868854495543
Merged-chr10-52423194-3	chr10	52422642	52423642	+	921.111145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	5595.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	3.49692442678403	3.90600247062561	3.86146907144692	3.69783154315287	3.96303640099709	3.77962712265418	0.181761651599463	0.74567649696032	0.936251303305737
Merged-chr1-156030011-4	chr1	156029526	156030526	+	879.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	4791.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	4.80820393951532	5.2163090630248	5.27321455261234	4.99626544551999	5.51119366240916	5.45306234224482	0.468284242202361	0.240386143299626	0.637435893658386
Merged-chr5-139197858-3	chr5	139197359	139198359	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2778.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	6.39441114773128	6.24580318034144	6.60255105298888	6.50847530110382	6.29370451522344	6.26335900185693	-0.0854618137251159	0.763960064102362	0.941853686567731
Merged-chr10-80797998-4	chr10	80797525	80798525	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	601.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	8.51625711638934	8.62709596831615	8.40448664358196	8.34299437096123	8.6135344132827	8.1541518946067	-0.180576047949347	0.432814367109371	0.797521047015227
Merged-chr4-150595235-3	chr4	150594729	150595729	+	699.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	56945.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	5.0166646913677	5.07673773403069	5.33262448664685	5.49238008674963	5.60144248288764	5.39605836769388	0.732824631874269	0.0360141973394956	0.23334911479713
Merged-chr6-94509895-4	chr6	94509417	94510417	+	956.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9603.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	6.11216472795141	6.73300292380745	6.54193855558187	5.75092711165838	5.74406540835998	5.62581157897515	-1.32662960618145	4.64874698507925e-05	0.00148431672730036
Merged-chr11-119955097-5	chr11	119954565	119955565	+	756.700012	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11973.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	5.9251751319384	6.08998502611958	5.78925392691454	5.66340239238554	5.90752482234884	5.63230233646626	-0.350378737672797	0.269881360841564	0.666912813996937
Merged-chr15-4016445-4	chr15	4015970	4016970	+	950.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_045740)	TTS (NR_045740)	-9958.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	4.59288680143018	4.68716172828626	4.70052003988426	4.51868223065753	4.47631044203941	4.87278244328758	-0.0895684665249081	0.832776583789518	0.960757500748132
Merged-chr11-114887566-4	chr11	114887050	114888050	+	720.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx4B|LINE|L1	-2491.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	3.89748406050361	3.82585929834694	4.28875071587751	3.81808874233983	4.07744839259722	3.85456149553512	-0.244106068274888	0.648256416874484	0.901726822360623
Merged-chr15-84924437-2	chr15	84923937	84924937	+	589.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_016714, intron 1 of 7)	intron (NM_016714, intron 1 of 7)	1009.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	5.84301599277532	5.61825538573553	5.5836643730764	5.82833357574901	5.70013103195205	5.55921909754839	0.0241687307162238	0.94025835570859	0.986792088790777
Merged-chr9-45441243-2	chr9	45440743	45441743	+	945.6666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081270, intron 1 of 32)	intron (NM_001081270, intron 1 of 32)	-10011.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	3.90072727026185	3.62825303425396	3.69457676821735	4.52919651091615	4.6750355206435	4.15580318257524	2.11976979990054	7.02151256728378e-05	0.0020948225804896
Merged-chr11-103030420-4	chr11	103029914	103030914	+	920.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	1871.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	6.25562650237506	6.29165661279608	6.50614110305919	6.49822562356438	6.45987639755843	6.30613137665221	0.133933299143566	0.626179696860863	0.892819497179456
Merged-chr14-25747752-4	chr14	25747301	25748301	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21055.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.54074132491894	5.12579711226628	5.41052132517718	5.31395826807369	5.02138697741787	5.38538488086308	-0.258438022400064	0.487588734478732	0.828533944913187
Merged-chr8-71951024-4	chr8	71950540	71951540	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164581)	promoter-TSS (NM_001164581)	-26.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	6.21445249983424	6.74290882867476	6.62765965976482	6.50010302551927	6.4602076434587	6.13094721326638	-0.26731704074635	0.383662992019367	0.76494131641868
Merged-chr14-27352214-2	chr14	27351714	27352714	+	913.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9175.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	5.68655785468873	5.90380507674901	6.36162492756782	6.08428078610087	6.05496487398951	6.17688348499509	0.174876635531419	0.595241367653368	0.879433674432232
Merged-chr2-157132311-2	chr2	157131811	157132811	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001139520, intron 1 of 16)	B4A|SINE|B4	2911.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	4.67726009351011	4.87567710409007	4.93532845571285	5.21579212414347	5.27742424511926	5.20558711782926	0.869842026535245	0.0190153639952291	0.156207958072369
Merged-chr12-103339858-4	chr12	103339342	103340342	+	893.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	16159.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	5.80137014050042	5.85363695343973	5.57775468624098	6.07675324586167	6.39833906524823	6.07566909780576	0.780095611612665	0.0127897895097746	0.119561038706811
Merged-chr19-6950746-3	chr19	6950266	6951266	+	844.7777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007522, exon 3 of 4)	exon (NM_007522, exon 3 of 4)	8204.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	5.61564816481326	6.0298160939486	5.94940863684376	5.98146325152528	5.91727294913963	6.31657807777935	0.34431433009021	0.290091165074958	0.687733205116261
Merged-chr10-69257760-4	chr10	69257251	69258251	+	997.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	44557.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.59169365070319	5.79167485709088	5.28088706879257	5.90425387719867	5.87006758241946	5.91903843817851	0.55896565386874	0.0934896223268331	0.407217949776011
Merged-chr14-120262928-4	chr14	120262443	120263443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12726.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.7215339775496	6.63765029870701	6.48887825499621	6.56979011916975	6.761092277904	6.95263146150248	0.219993060534203	0.414180262305266	0.785669718575296
Merged-chr10-13500171-2	chr10	13499671	13500671	+	901.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-857.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	7.32511730681298	7.26805349988925	7.29063610596274	7.3980022216304	7.5599080607432	7.20502435857976	0.162991883131495	0.494601592256903	0.832098209532918
Merged-chr6-37426459-2	chr6	37425959	37426959	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178661, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	15689.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.47568162764389	6.54014497593654	6.26630012436779	6.59522079800391	6.83170416249433	6.80162098658466	0.487420187388526	0.0708726025991183	0.349151421969653
Merged-chr7-89423336-3	chr7	89422830	89423830	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2976.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	3.80042444857138	3.21914467399397	3.35946864485998	2.99812297514304	2.95606839336479	3.19926261428949	-1.86319761377247	0.00778587522162578	0.0844469841490332
Merged-chr10-59951937-4	chr10	59951414	59952414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-144.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	6.08185954201313	6.18826894979154	6.31010751641921	6.31338935584408	6.15760702744508	5.98445503530816	-0.0441931222743342	0.879321320483566	0.972083703102674
Merged-chr14-103531975-3	chr14	103531456	103532456	+	726.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022886, intron 3 of 30)	intron (NM_022886, intron 3 of 30)	18615.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.19575292135225	2.09582685734129	2.33037582875436	2.06570352107473	2.17726538149211	2.14708276754052	-0.546709431142668	0.541366598670522	1
Merged-chr7-79660127-4	chr7	79659630	79660630	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029835)	promoter-TSS (NM_029835)	-66.0	NM_029835	77011.0	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	3.40564518938399	3.0289432746575	3.24655358598432	3.21951173339964	3.19481733723195	3.01671240638701	-0.361939662798407	0.58780678638043	0.876090509043824
Merged-chr9-21444922-2	chr9	21444422	21445422	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357721, intron 1 of 19)	L1M4|LINE|L1	20014.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	3.8148518665299	3.94790025523942	4.27294801606411	4.17946658730376	3.7672087772021	4.29811547733135	0.217412259751838	0.687388393721807	0.91713510141755
Merged-chr7-110166383-4	chr7	110165897	110166897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	44338.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	6.56475156604801	6.73546847071854	5.94326631493878	6.43568468922134	6.80971881295762	6.22657425281561	0.0873134807987151	0.801775485226437	0.953086016975963
Merged-chr13-16011930-3	chr13	16011426	16012426	+	846.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008380)	promoter-TSS (NM_008380)	75.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	3.7086330831877	3.85181615464747	3.82829246231011	3.65932573067895	3.6020267187022	3.40524682350717	-0.787421996504983	0.16182330511857	0.534962001283512
Merged-chr9-89237322-4	chr9	89236832	89237832	+	904.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	25948.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	3.12557992803405	2.82083453341266	3.07913808238943	2.73502224070719	2.84835397539263	2.85515312578355	-0.97589807797142	0.176273786176602	0.556484761930209
Merged-chr7-123394273-4	chr7	123393778	123394778	+	976.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-13539.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	6.5295651687258	6.65858661306926	6.15933736741497	6.47278642215935	6.709416276876	6.41008828860475	0.107216791934641	0.715835418685557	0.92647595514209
Merged-chr9-90267882-2	chr9	90267382	90268382	+	572.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	2887.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.63660939292129	5.55755005742541	6.03446530011166	6.30550870661063	5.97165768198455	6.23791354830375	0.749783257068541	0.0211212496193786	0.167435989919817
Merged-chr7-101836777-4	chr7	101836285	101837285	+	875.611084	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001122739, exon 2 of 29)	5' UTR (NM_001122739, exon 2 of 29)	1039.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	5.88475962652744	5.93661680857744	6.15197093255993	6.18330289610083	6.05053312175736	5.99386324386722	0.161541150204949	0.584413183997119	0.874568023559098
Merged-chr3-94587263-3	chr3	94586761	94587761	+	715.083313	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-4545.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	4.42375988030836	4.71975333471732	4.17166351804183	4.13353532294447	3.89853200227836	3.98500307549229	-1.27092315283289	0.0109233973755882	0.106918485922591
Merged-chr2-170308124-4	chr2	170307614	170308614	+	781.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48247.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	2.75498798017811	2.48881691674231	2.49053407327124	2.75487546390543	2.59548185479118	2.8211385806287	0.745664122296082	0.345486464020521	1
Merged-chr14-21049564-4	chr14	21049075	21050075	+	999.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018829, intron 1 of 8)	intron (NM_018829, intron 1 of 8)	2867.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	4.87919882094263	4.67923122914513	5.23434878912739	4.94958110663409	5.00464170424552	4.86967981079034	0.0187180421595574	0.963270244754323	0.991082197093192
Merged-chr15-80134067-4	chr15	80133570	80134570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025609, intron 1 of 10)	intron (NM_025609, intron 1 of 10)	916.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	7.29021119061965	7.44384609351666	7.41441127926498	7.4544267132592	7.50197475747229	7.40789607748512	0.109330923335025	0.628289823448207	0.893577294752216
Merged-chr12-69360839-4	chr12	69360355	69361355	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3679.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	5.37734268758154	5.36808744043375	5.388620257098	5.48120383164019	5.57694736080445	5.70129635182669	0.397715045550933	0.224728495600191	0.619609949365475
Merged-chr9-45899075-2	chr9	45898575	45899575	+	857.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361114, intron 3 of 13)	B1_Mus2|SINE|Alu	7107.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	3.58569743142927	3.77160411496615	3.88045210877419	4.03573285272958	3.81246607206936	4.17786903852389	0.822744184279232	0.123692138123141	0.470659623115383
Merged-chr15-39783591-2	chr15	39783091	39784091	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-13454.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	4.28342589722175	4.25514529597478	4.16781763403103	4.31455981797313	4.23321208946242	4.03809034456178	-0.0905324902314782	0.846642350751641	0.964082230147561
Merged-chr7-25725144-2	chr7	25724644	25725644	+	785.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_144922, intron 12 of 14)	intron (NM_144922, intron 12 of 14)	-6091.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	2.42999991700333	2.22745744480966	2.43879401363514	2.21869466957217	2.09319528881824	2.32159138779304	-1.10209584159585	0.214591466919166	1
Merged-chr1-16798504-4	chr1	16798017	16799017	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	110061.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	5.05926674761319	5.01283876020919	5.09583058924377	5.13057150702965	5.14497126427835	4.94632709014022	0.0652799660473691	0.858009683966621	0.966785186918462
Merged-chr13-110711074-4	chr13	110710574	110711574	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MDa|LINE|L1	-192425.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	4.26546021674828	4.58267330416042	4.53640551791729	3.97843169997886	4.23156358213295	4.35647073044865	-0.72179456522728	0.128636264903005	0.479765411476883
Merged-chr7-120918715-4	chr7	120918235	120919235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164096, intron 1 of 19)	intron (NM_001164096, intron 1 of 19)	991.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	5.8213581233924	6.47577984745091	5.78500603918758	5.81131804084956	5.91873547272108	5.79421560499225	-0.410434217382834	0.242097223688129	0.639162163852051
Merged-chr6-38980934-2	chr6	38980434	38981434	+	781.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	61948.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.30865085743451	5.14503978137141	4.79967996990315	5.48663351942963	4.97324098781702	5.13621783833033	0.21265214989248	0.600816562257828	0.881855262262798
Merged-chr3-152193841-4	chr3	152193361	152194361	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025926)	promoter-TSS (NM_025926)	-16.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	7.06234397186862	7.36690937517182	6.7921083973428	6.7308839342306	7.14561361257437	6.81937487710789	-0.281768683506955	0.330764635261216	0.722198529765023
Merged-chr12-17721020-1	chr12	17720520	17721520	+	609.0	f1_balb.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	30211.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.10649026334812	3.02834308870807	3.32234214148385	3.37007191790635	3.34903902966444	3.49967846650053	1.0460409253874	0.0973096437083051	0.415931619339428
Merged-chr6-86396753-3	chr6	86396253	86397253	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	397.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	8.26825993550623	8.31166412472655	8.24474766479417	8.1174654561078	8.30502327052867	7.9554028895583	-0.189525458987604	0.385415660664161	0.7664651010383
Merged-chr1-43535877-4	chr1	43535391	43536391	+	968.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010879, intron 3 of 4)	L3|LINE|CR1	90140.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.99203621582695	3.82417750501654	3.91364108586758	4.17050223485627	3.98005212484954	4.08110345853213	0.4936133418872	0.320030972392772	0.713841334732408
Merged-chr16-31947448-4	chr16	31946956	31947956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027897, exon 1 of 1)	non-coding (NR_027897, exon 1 of 1)	1065.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	8.16261237687959	8.38503147737624	7.79024500865468	8.07384985407748	8.47857757759428	8.02722767027796	0.102583037210881	0.700354797018984	0.920919335036368
Merged-chr3-51718236-3	chr3	51717762	51718762	+	757.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	57083.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.12609742141558	4.24552380544611	4.2270552723654	4.31383355391739	3.99506378344508	4.10819359692296	-0.158869982633266	0.739580943168592	0.934245371298156
Merged-chr15-97165736-2	chr15	97165236	97166236	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	B1_Mus1|SINE|Alu	1508.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	5.53688451801829	5.56790414453007	5.74892845721236	5.32926020026704	5.2321404505602	5.0645012943147	-0.768149541705387	0.0257532550637522	0.190277471635802
Merged-chr5-65764308-8	chr5	65763784	65764784	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024917, intron 1 of 19)	CpG	763.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	7.70601960559092	7.8459173178307	7.82975472364491	7.55591203737645	7.24345088865659	7.44940444551251	-0.546927456100183	0.0183099694946527	0.152643617043489
Merged-chr7-96413726-3	chr7	96413210	96414210	+	968.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-71746.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.43657337561023	3.64434854100186	3.4358225986063	2.96791471034921	2.88132711887226	3.34294463131168	-1.92435729279219	0.00633713043267832	0.0727290910024665
Merged-chr6-140678814-4	chr6	140678296	140679296	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009637)	TTS (NM_009637)	51911.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	2.40017700379423	2.29323610873375	2.20650938653536	2.47277334313217	2.3187826594231	2.79258848195123	1.44734074403464	0.104866737969587	1
Merged-chr11-79871939-2	chr11	79871439	79872439	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90448.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	7.98538801785167	8.2546213302889	8.03997106254481	7.38096545417846	7.91570096658833	7.20528501646403	-0.784430204881888	0.00517574273556653	0.062623702419808
Merged-chr1-157549880-4	chr1	157549370	157550370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159986, intron 12 of 25)	intron (NM_001159986, intron 12 of 25)	23700.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	4.34715220862604	4.27239855154408	4.11410714217562	3.77205472763212	3.83109260463986	4.0883106179567	-1.05425840832194	0.0353482786695322	0.230856949533664
Merged-chr8-68951994-4	chr8	68951494	68952494	+	912.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	71439.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	5.4295981265552	5.21812928843408	5.26818033085376	5.94449637700756	6.12329268587195	5.43464215798834	1.05933537693565	0.00329644033001627	0.0451600088077763
Merged-chr5-67778233-4	chr5	67777746	67778746	+	734.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001284345, intron 7 of 36)	intron (NM_001284345, intron 7 of 36)	69185.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	2.78890302411361	2.64447176320012	3.05819156859326	2.59859872087836	2.77284842825437	3.01947150407932	-0.161553507299903	0.833854741812076	0.961108522623307
Merged-chr8-4613708-3	chr8	4613219	4614219	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	549.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	6.61360585045888	6.45657621580451	6.41375900229239	6.82545863473159	6.46458803775391	6.52888925676931	0.182969293068238	0.508706329297029	0.839916585604953
Merged-chr5-96996731-3	chr5	96996220	96997220	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-969.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	7.30534633649631	7.98028972271638	7.31159561914446	7.43236671752324	7.55296961804762	7.22397086543842	-0.244831953642597	0.402247763604974	0.77787096574423
Merged-chr8-57780780-3	chr8	57780284	57781284	+	939.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175032, intron 11 of 11)	intron (NM_175032, intron 11 of 11)	-127729.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	3.19915406748085	3.4350467761486	3.22442979175474	3.21174441560003	3.05850829933499	3.23858061424169	-0.531238227952031	0.405410029765734	0.780134157220244
Merged-chr4-150008581-4	chr4	150008047	150009047	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	476.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	7.58597920503625	7.61915674534327	7.47729786698786	7.54505930550449	7.50827026653278	7.35067286247175	-0.132314767143332	0.55796153609909	0.86443214373182
Merged-chr2-45241182-3	chr2	45240759	45241759	+	606.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123817.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	6.43883419725667	6.28248063479253	6.37270887744267	6.27953400503022	6.26053074005951	6.53848857871941	-0.0150563376640397	0.956762266069579	0.989887454023164
Merged-chr17-80560962-4	chr17	80560465	80561465	+	971.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360144, intron 1 of 9)	intron (NM_001360144, intron 1 of 9)	2869.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	3.13005141928329	2.91488646984832	3.0302550041423	2.83979454509983	2.80388696256561	2.79653270200952	-1.05789491231632	0.13458369507467	0.490430403023745
Merged-chr1-58728477-7	chr1	58727957	58728957	+	937.285706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2095.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	7.37309511842067	7.1258817597301	6.98307376875997	7.11778657356675	7.15244259224288	6.88047436059142	-0.173044961436753	0.502995502082089	0.836691193058519
Merged-chr10-117221080-4	chr10	117220581	117221581	+	791.237488	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026570, intron 2 of 6)	intron (NM_026570, intron 2 of 6)	3426.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	3.49956904953895	3.59403046080899	3.45554682524456	3.25103215645824	3.54577535430644	3.35611532916512	-0.45658302373584	0.449431603191567	0.807765354206928
Merged-chr15-95848629-2	chr15	95848129	95849129	+	888.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-18557.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	4.72542370307198	5.02856183827974	4.81750497522824	4.91502827145986	5.1145401777833	5.16451689864302	0.431346128198158	0.266526133699896	0.664166899200562
Merged-chr2-143947357-2	chr2	143946857	143947857	+	852.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_024281)	TTS (NM_024281)	32026.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	3.63249688831655	3.36170012336171	3.67164009547058	3.66081752446262	3.5638894755556	3.29168621840181	-0.139718223830595	0.817668102532635	0.956767881392089
Merged-chr5-140749229-3	chr5	140748723	140749723	+	961.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_173405, exon 7 of 8)	exon (NM_173405, exon 7 of 8)	25096.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.5722464146912	5.56687015258664	5.64165436451586	4.82266618607327	4.87298027207935	4.71564535457364	-1.60323989067119	1.15237166243694e-05	0.000452081759962533
Merged-chr6-116004199-3	chr6	116003695	116004695	+	887.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9190.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.80599176137027	6.62364627777447	6.93267029272479	6.8463419152258	7.09571601233152	6.63880714275737	0.152013482813027	0.580182978462033	0.87276422265422
Merged-chr15-59076476-4	chr15	59075969	59076969	+	809.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	5557.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.58378256167463	3.18817630625423	3.61255053212963	3.15471848673646	3.29680886550038	3.12884293074151	-1.07617244382818	0.102141599513839	0.426143111329095
Merged-chr1-135691136-4	chr1	135690624	135691624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28939.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.18752901726256	4.92887605881959	4.9531896752068	4.35257785208998	3.59064645177478	4.1859682885913	-2.46045322128918	7.70257410686279e-06	0.000319181168468047
Merged-chr18-30583634-4	chr18	30583132	30584132	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	310767.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	3.02682981070047	2.85992641185244	2.78719306284454	3.03398411178535	3.23490492146282	3.05240875341317	0.991611125238441	0.158469373785839	0.530279082038611
Merged-chr2-25498077-4	chr2	25497582	25498582	+	979.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027062)	TTS (NM_027062)	2424.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	6.12088781369186	6.12350961579255	6.07042288935178	6.07342627665193	5.88558845262848	6.23514509999979	-0.0791535153787429	0.787892124550028	0.94877064431094
Merged-chr4-139178591-3	chr4	139178085	139179085	+	713.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_033543, exon 2 of 3)	non-coding (NR_033543, exon 2 of 3)	2070.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	3.50428187809517	3.74159366177215	3.99887992606673	3.99265658067088	4.13701103076264	4.06730147648502	0.974945445399749	0.0703156355859969	0.347353562445953
Merged-chr16-11053996-4	chr16	11053505	11054505	+	892.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12293.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	3.70355571502168	3.53884090623978	3.56860967668036	3.80654316474657	3.43928858954361	3.52856399296208	-0.0240493990387324	0.966722944628249	0.992349609766636
Merged-chr1-91053003-4	chr1	91052514	91053514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-430.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	7.1575691669856	7.14366210730739	7.18084039244367	7.01838894001266	7.2040183385683	6.86061576387723	-0.171948932346788	0.486002514610492	0.827641640456729
Merged-chr9-64914792-4	chr9	64914283	64915283	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162917, intron 34 of 34)	intron (NM_001162917, intron 34 of 34)	36824.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	5.49801339034439	5.34386085534664	5.13774133097628	5.87706429595155	6.06867864295229	5.68506627080645	1.01922253883603	0.0028934785591132	0.0409596059793623
Merged-chr8-108704618-7	chr8	108704141	108705141	+	938.8095089999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-10003.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	6.36678862537812	5.75468296689766	5.9518285581658	6.67596131018735	5.78191030158104	6.2566153209141	0.395347765324511	0.296762889741937	0.693396705620489
Merged-chr15-27924900-2	chr15	27924400	27925400	+	641.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	100948.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.24284447253671	4.75711016028903	4.29570027498659	4.93882958391047	4.78225999581701	4.26066996466755	-0.301160187641596	0.572973665776233	0.869934493236159
Merged-chr12-72362091-7	chr12	72361589	72362589	+	993.238098	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	46965.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	4.57329908210147	4.56480358592103	4.96386228983456	4.98685327151705	4.71200047396884	5.2156912302334	0.61717428503477	0.148233794006693	0.513762236213799
Merged-chr11-53352206-2	chr11	53351706	53352706	+	873.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	1439.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	7.57959208174692	7.81167789333028	7.26992765917615	7.34374987724877	7.44236276969074	7.44001455900773	-0.253101286831489	0.316135916831243	0.71025589609283
Merged-chr11-119268812-2	chr11	119268312	119269312	+	904.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	849.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	7.47659979767688	7.79844776249576	7.32366474050468	6.98356360253832	7.27847856847617	6.99096391672974	-0.685296603957327	0.0099765563052623	0.100180302997093
Merged-chr2-164071209-4	chr2	164070685	164071685	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291155)	promoter-TSS (NM_001291155)	-16.0	NM_001291155	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	7.12378257925754	7.32356203917784	7.3970549061061	7.1101417202219	7.07445931903127	7.29452963714435	-0.188205537122924	0.439256419988414	0.801063133660301
Merged-chr12-111376266-4	chr12	111375770	111376770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	1448.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	7.10064656752803	6.985280411028	6.75297629843956	6.86945664278689	7.0966575434084	6.98957902607918	0.0443496292472049	0.862776970438736	0.96809238390547
Merged-chr14-55604115-4	chr14	55603609	55604609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	124.0	NM_001159417	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	7.82757247979863	7.81274517753625	7.47664965442717	7.83340177323356	8.07948870813242	7.52292420353185	0.171489618360159	0.51019908232441	0.840762981840047
Merged-chr4-150594518-4	chr4	150594012	150595012	+	999.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 12 of 22)	URR1B|DNA|hAT-Charlie	57662.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.74459342720001	7.04223697917489	6.7909180580757	7.20786225036976	7.63489270177003	6.7343664124655	0.587387002820929	0.0612099943627596	0.320798675645283
Merged-chr11-62820373-3	chr11	62819869	62820869	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_053169, exon 1 of 6)	5' UTR (NM_053169, exon 1 of 6)	116.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	2.84010859157338	2.637554456882	2.87210591825587	3.02943665339152	2.70915041216033	2.69266500919059	0.180746937575377	0.809854845442752	0.954819723409146
Merged-chr16-84990089-4	chr16	84989602	84990602	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	17891.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	5.38994658362499	4.96702658379735	5.22071882284249	4.81152584765555	4.92108110146626	5.05489345263087	-0.583475876671259	0.130402825122547	0.482568746844423
Merged-chr4-63357220-4	chr4	63356736	63357736	+	922.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013623, intron 3 of 5)	intron (NM_013623, intron 3 of 5)	1074.0	NM_013623	18407.0	Mm.381399	NM_013623	ENSMUSG00000028359	Orm3	Agp-3|Orm-3	orosomucoid 3	protein-coding	3.35952773095556	3.22225257674289	3.18979444593758	3.27464722589076	3.17946331535294	3.31932160742018	-0.0296427052468038	0.96190640391983	0.990691557558141
Merged-chr6-115620056-1	chr6	115619556	115620556	+	574.0	f1_c57bl6.idr	intron (NM_029780, intron 14 of 16)	intron (NM_029780, intron 14 of 16)	18118.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	2.92377909523465	2.81752517055663	2.83997223692766	2.87343625311737	2.94014718852265	3.03192970256107	0.418146974709598	0.545125756948176	0.858019423019685
Merged-chr2-30270347-4	chr2	30269851	30270851	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252571, intron 2 of 9)	intron (NM_001252571, intron 2 of 9)	3532.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	4.93371899303887	5.11671609946034	5.00790238019729	4.75964049941559	4.88616259471823	4.77531790995419	-0.462041320080803	0.22751330973587	0.622644333537758
Merged-chr15-97767935-4	chr15	97767416	97768416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-250.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	4.81624967761305	4.36776146619717	4.73407365421232	3.83230677422491	3.59741715283459	3.765779967494	-2.76584072030532	3.7140210034276e-07	2.27065583874507e-05
Merged-chr10-19978995-4	chr10	19978505	19979505	+	857.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008580, intron 1 of 29)	RLTR11B|LTR|ERVK	44479.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	3.59905129126748	3.65076284658758	3.61693559127523	3.43969668510648	3.50182917968524	3.73735575841142	-0.22666098360317	0.687836175274453	0.917193226920892
Merged-chr17-72962164-3	chr17	72961658	72962658	+	839.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43853.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	2.96649425751551	3.09523049795129	3.16668145542631	3.25671344525832	3.02962531690292	3.00043960374874	0.114507680761737	0.863450591467907	0.968254670575276
Merged-chr19-12518027-4	chr19	12517528	12518528	+	864.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16032.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	4.06872877451241	4.19547011690992	4.16049045411217	4.2956850093994	4.3318458108045	4.60562566121597	0.72012703243411	0.12009588579983	0.463412013896222
Merged-chr7-35140585-2	chr7	35140085	35141085	+	574.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	21292.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.17425800461101	5.21351571426518	4.89947209593675	4.797852298076	5.00712567972892	5.10842099230744	-0.294268438287362	0.442229968341327	0.803148926264737
Merged-chr7-45703836-2	chr7	45703336	45704336	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_009800, exon 8 of 9)	exon (NM_009800, exon 8 of 9)	-1411.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	4.77781547947211	5.08087359112638	5.22281572655731	4.97067489413925	5.08001893981965	5.25537966385567	0.147272598631096	0.703552015091719	0.922108924938678
Merged-chr7-17025807-2	chr7	17025307	17026307	+	820.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2107.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	6.56757446585948	6.51823118890225	6.44681675030201	7.22074998355958	7.30208724285947	6.89462536191412	0.997833826217261	0.000141382133762559	0.00378226929864349
Merged-chr1-85250563-1	chr1	85250063	85251063	+	913.0	f1_balb.idr	intron (NM_175219, intron 6 of 7)	intron (NM_175219, intron 6 of 7)	20003.0	NM_175219	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	4.28875354860729	4.38160291163289	3.84766905485772	3.71255534396043	3.64827479529716	4.46411511081745	-0.554145821565987	0.363478360178807	0.7490850128485
Merged-chr5-137785747-2	chr5	137785247	137786247	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	954.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	7.59792273687592	7.56352036248885	7.38151620901927	7.38637626477344	7.55434332042905	7.19064184725326	-0.186823305606353	0.440223483187874	0.801709686782591
Merged-chr17-50735598-4	chr17	50735105	50736105	+	888.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001285991, exon 23 of 23)	3' UTR (NM_001285991, exon 23 of 23)	36924.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	2.96292669641667	2.85194715931141	3.02563324899237	3.47026746018904	3.15778770064323	3.33352392002544	1.70047168516215	0.0122333224519651	0.11579984896331
Merged-chr4-137358408-3	chr4	137357925	137358925	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	-666.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	6.08783048380217	6.20581013666783	6.62875010680678	6.46801755659569	6.7082588239439	6.59123773319821	0.454535858262237	0.126148483410699	0.475000588634151
Merged-chr5-69522288-3	chr5	69521789	69522789	+	888.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023784, intron 3 of 5)	intron (NM_023784, intron 3 of 5)	20358.0	NM_023784	75581.0	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	3.63789272433497	3.72146303363117	3.6662693027334	3.57747012845954	3.65583355111267	4.11131107593916	0.38446135284297	0.498261463768321	0.833856267944725
Merged-chr9-113930906-4	chr9	113930396	113931396	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001083319)	promoter-TSS (NM_001083319)	-38.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	6.88683470644448	6.94250385019761	6.60814610610347	6.90877812713973	7.06279297208685	6.7019031220824	0.122827296608131	0.647223340660259	0.901279596499906
Merged-chr9-77725732-3	chr9	77725231	77726231	+	935.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus1|SINE|Alu	-28804.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.793141434034	4.76493134949626	4.61561887437554	5.26195336329838	4.94443912204898	5.06960663945491	0.795351282222483	0.0427320363353846	0.259209032579736
Merged-chr11-106677898-5	chr11	106677395	106678395	+	808.4400019999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	37386.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	4.05153198086301	3.72897774384996	4.04622968422517	3.66129649356946	3.66900518770731	3.92873062998664	-0.622842394219442	0.248942070479183	0.645891304368634
Merged-chr13-74617659-7	chr13	74617156	74618156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22197.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	5.95075083028857	6.01243139726906	6.15803893010841	6.00472779047365	6.24899569947045	6.17683854548746	0.195270939455558	0.502846335471278	0.836691193058519
Merged-chr5-28038440-3	chr5	28037917	28038917	+	867.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32995.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	5.41528869198972	5.72763109113569	5.63286146954468	5.07749282782559	5.59065500310962	5.06745822991731	-0.596799806643873	0.119283508161719	0.461750746246286
Merged-chr2-33431521-4	chr2	33431008	33432008	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276332)	promoter-TSS (NM_001276332)	-184.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	6.67445316142538	6.97690463133038	7.07781417444905	7.01432938058699	6.80061319099659	7.09851030632712	0.084355994212165	0.752289754652616	0.938157651950668
Merged-chr15-98510667-4	chr15	98510155	98511155	+	995.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9179.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	7.21423945385488	7.23802264261422	7.16949833625953	7.05266342490929	7.56661712695505	6.9293282081164	0.0295171193404507	0.91573445666895	0.981200822249461
Merged-chr9-96438047-6	chr9	96437528	96438528	+	951.2999880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40647.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	7.368001263384	7.4902363563116	7.35328434232286	7.14241168532936	7.35940953793712	6.91074711714106	-0.363180161841673	0.150108169861934	0.51688627325901
Merged-chr11-55121569-3	chr11	55121028	55122028	+	696.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	G-rich|Low_complexity|Low_complexity	23543.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	3.42074831667972	3.30717423381441	3.49733765056478	3.34919629243923	3.13786518276883	3.11152957818835	-0.820144792356034	0.193408206125281	0.580538581410208
Merged-chr18-4315298-4	chr18	4314824	4315824	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	37629.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.58428131996533	6.33839463203413	6.10373760507208	6.5307482495868	6.44365571998394	6.49101093543011	0.193254397042838	0.500509269014426	0.83506527221993
Merged-chr4-122855962-1	chr4	122855462	122856462	+	549.0	f1_c57bl6.idr	intron (NM_008917, intron 8 of 8)	intron (NM_008917, intron 8 of 8)	19735.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	3.69285772839632	4.23280311855298	4.50224763805028	3.98854464657174	3.76002816944666	3.8246961302577	-0.933579132458549	0.101506989868474	0.424965716376148
Merged-chr1-165640885-2	chr1	165640385	165641385	+	631.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6344.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.12284797808112	3.91296112452015	3.82807572669932	4.03773794197748	3.96246206672129	4.27827038223379	0.366592088571425	0.471905748468926	0.820407285917898
Merged-chr11-106156806-2	chr11	106156306	106157306	+	604.5	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	3121.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.25803524286092	2.9023765793231	3.37179062043307	3.24146317960983	3.10301061868528	3.73618747824491	0.759850633840335	0.283341344400993	0.681276847509619
Merged-chr11-101170505-3	chr11	101170004	101171004	+	889.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146030, intron 1 of 12)	CpG	798.0	NM_146030	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	3.99001171626924	3.77902168741101	3.98242305736667	3.8772255875235	3.77953443884855	3.90599524729878	-0.207874085960398	0.685597446054619	0.916331487430729
Merged-chr19-46600577-4	chr19	46600085	46601085	+	763.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146099, intron 1 of 3)	L1MB5|LINE|L1	1479.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	4.19349124763233	4.28838478189874	4.58484349944941	4.61579782879143	4.40337098994247	4.31420503426016	0.251057913915201	0.584386603175659	0.874561879083458
Merged-chr13-37642568-4	chr13	37642097	37643097	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-183441.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.64060264617563	6.7627591532562	6.44834988876938	6.52146993284421	6.61403530222995	6.544499682046	-0.110956603593903	0.675982353093741	0.912421384593547
Merged-chr5-72223110-4	chr5	72222604	72223604	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	19761.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.86396117642688	4.713191017435	4.8645840998496	5.14561990615803	5.0578899833045	5.20417322026902	0.694264861618653	0.0637550387858019	0.329028671294983
Merged-chr13-100678047-2	chr13	100677547	100678547	+	974.083374	f1_balb.idr|f1_c57bl6.idr	exon (NM_183115, exon 2 of 12)	exon (NM_183115, exon 2 of 12)	8566.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	4.9430974869843	4.84424514440616	5.18598061044351	5.62612998863989	5.7147841568312	5.40947095450182	1.22715603111902	0.000589679055228884	0.0119819328028046
Merged-chr9-38728400-4	chr9	38727911	38728911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145957, intron 9 of 18)	intron (NM_001145957, intron 9 of 18)	10143.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	5.19465892853993	5.48298478334679	5.24972651233572	5.35446692597181	5.58646534273299	5.17765788150799	0.150845562772249	0.67717215602965	0.912699165331091
Merged-chr7-5083430-4	chr7	5082897	5083897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010147, intron 2 of 11)	intron (NM_010147, intron 2 of 11)	3162.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	6.36610617524706	6.42427492062978	6.62556604932038	6.66486128571144	6.33431540317127	6.46301787574919	0.0363835881497672	0.896211364450856	0.975793383188212
Merged-chr11-53308260-2	chr11	53307760	53308760	+	762.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7781.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	4.04472533838	4.52390922938381	3.8103102823313	4.0394433434027	4.10006340085082	3.9388132595661	-0.400265160682371	0.463280760188516	0.815758448709471
Merged-chr15-73351215-3	chr15	73350736	73351736	+	765.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	71955.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	2.87774435009633	3.15391182984576	3.23123707731423	3.24427953237356	3.18022216980387	3.3024870033722	0.632538565479292	0.339530423663719	0.729313720985741
Merged-chr15-81502427-2	chr15	81501927	81502927	+	597.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	36111.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	3.58006644864039	3.54702336237888	3.36155694599871	3.73300039919312	4.07897435164094	4.07066766002546	1.54295361706181	0.00758265235572537	0.0828327868209527
Merged-chr12-108636712-4	chr12	108636183	108637183	+	801.783325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163396, intron 2 of 14)	MIRb|SINE|MIR	930.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	7.4255198885753	7.40130651879283	7.31656439666038	7.59751204491209	7.44849544225238	7.7001686240147	0.286872432295698	0.210506028746193	0.602621125710907
Merged-chr10-24150313-4	chr10	24149852	24150852	+	855.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	1035.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	6.13413798966886	6.32890686240903	6.44684817525321	6.57948903560664	6.55017020592506	6.41462695285845	0.356153013266867	0.195808421904598	0.583465154167297
Merged-chr4-141478572-1	chr4	141478072	141479072	+	588.0	f1_c57bl6.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33899.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	4.93362087607741	5.22002602298054	5.58683488495476	5.8889130599168	5.69769465134655	5.53899189762194	0.876837961334682	0.0184167263880603	0.153043831734001
Merged-chr11-8847853-4	chr11	8847325	8848325	+	981.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	163366.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	3.43317673751317	3.49631917586707	3.64865038827166	3.62680813939786	2.98588006928603	3.39939543335237	-0.601883394361225	0.37145686937618	0.755590455851299
Merged-chr12-69159722-4	chr12	69159234	69160234	+	982.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-548.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	5.984820615071	5.82159531603375	6.09804643142776	6.00205513563709	6.30493124448415	6.09367292026919	0.31472611955574	0.296008650744293	0.692779918635739
Merged-chr9-64771389-4	chr9	64770863	64771863	+	990.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-33607.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	5.94336050482199	5.9939440398543	5.84734802329938	5.28993711085635	5.74269427517973	5.11387151906355	-0.915004024668953	0.0124702232858174	0.117444520562116
Merged-chr11-75658366-2	chr11	75657866	75658866	+	649.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_008659, exon 4 of 32)	exon (NM_008659, exon 4 of 32)	2351.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	3.21372213300514	2.93619735834663	2.83733899958336	3.08310102765118	3.08130000524072	3.21708378144871	0.507742141087872	0.466297566964221	0.817498201823315
Merged-chr5-32013571-3	chr5	32013066	32014066	+	915.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-122906.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	5.54372009812401	4.92618057650339	4.93569641563896	5.67312125518122	5.28917100328073	5.04273521287405	0.372158352717449	0.384631619792073	0.765823037135813
Merged-chr15-59600273-1	chr15	59599773	59600773	+	626.0	f1_balb.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-48381.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	3.3075241615789	3.24851816003005	3.46140398312539	3.10382439946699	3.22526452734721	3.2028498725245	-0.648932899039732	0.301450189460809	0.698200786354329
Merged-chr18-54918099-4	chr18	54917595	54918595	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72085.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.83249257324398	5.66798988950337	5.8848799070672	6.00594229213799	5.93456994834133	5.65998714925556	0.162425565775759	0.60474524419273	0.883226183914895
Merged-chr11-31736275-4	chr11	31735776	31736776	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64414.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	6.46532285672954	6.29498640436356	5.97887348735959	6.48410366559864	6.21607493835519	6.01609025843394	-0.0224671663948768	0.942930690202091	0.987217876821358
Merged-chr1-34479280-6	chr1	34478730	34479730	+	855.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19182.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	5.34906897791273	5.13898127597153	5.60918245997381	5.60984703129644	5.3127784419758	5.50928901637929	0.214327326404964	0.549984475075587	0.860509903840749
Merged-chr19-14668651-4	chr19	14668136	14669136	+	965.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-70453.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	4.2356824024668	3.86654759613493	4.50819783142516	4.54202574002691	4.3379178700597	4.89343164404845	0.975318951299784	0.0563046737740674	0.305902378258871
Merged-chr9-21723539-4	chr9	21722998	21723998	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010700)	promoter-TSS (NM_010700)	-78.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	7.66239595837159	7.61605255047618	7.43023831121011	7.60264351548495	7.87192730769814	7.34202988995406	0.0833146179968255	0.743024999573554	0.935419616977582
Merged-chr5-112277733-2	chr5	112277275	112278275	+	940.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001326590, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	1084.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	6.63345309868404	6.49620017799116	6.3737259576787	7.10956078491175	6.71866253036072	6.53023069313205	0.479398329615073	0.0998963153567647	0.421550908978775
Merged-chr8-105324567-2	chr8	105324067	105325067	+	712.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_177449, intron 1 of 4)	intron (NM_177449, intron 1 of 4)	1709.0	NM_177449	234684.0	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	2.97715777963354	3.11055671038954	3.55222556372006	3.39099524868914	3.44913086045125	3.3598749112937	0.682868420355381	0.306868924316434	0.703091920100449
Merged-chr9-21510193-4	chr9	21509758	21510758	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001324510)	promoter-TSS (NM_001324510)	-24.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	6.62236900008963	6.57084792340112	6.61253197537575	6.85075241588294	6.68307398873941	6.79806025905155	0.275007594039289	0.277295679098195	0.674534718283401
Merged-chr11-82952098-4	chr11	82951646	82952646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183201)	promoter-TSS (NM_183201)	44.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	8.32932498884212	8.59820340077341	8.24251865814907	8.28212505898982	8.70660466393113	7.9970254304344	-0.0426448900403705	0.873339570923992	0.97040331531529
Merged-chr10-19554029-4	chr10	19553537	19554537	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37912.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	5.17040974007631	5.23722065990044	5.251615995001	5.05676569076518	5.33383745788844	5.31501315630565	0.0492722889141674	0.889530853240202	0.974240173857916
Merged-chr11-85663622-3	chr11	85663129	85664129	+	903.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	56115.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	3.9048794685126	4.26159102384318	3.52991253481746	3.82392924926892	3.69990293388099	3.93687876270742	-0.374008076203784	0.524217384207855	0.848636745951617
Merged-chr4-131855203-4	chr4	131854698	131855698	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025297, intron 3 of 9)	intron (NM_025297, intron 3 of 9)	11727.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	4.95771634859179	4.60947769828012	4.8231085564571	4.43526698609273	4.60818644049982	5.2392856118683	-0.0118440445509637	0.979763189150693	0.995332945386782
Merged-chr6-91684021-4	chr6	91683550	91684550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-17.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	8.16598183186219	8.09873783075017	8.01609963221849	8.12535334698479	8.2353677766738	8.12895077472508	0.0970707801666484	0.640635204242684	0.898526347210755
Merged-chr4-140961254-4	chr4	140960763	140961763	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023374)	promoter-TSS (NM_023374)	-8.0	NM_001355515	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	7.84136389731834	8.03746562461501	7.73013134950411	7.88963565752872	8.06871336546625	7.72331145806539	0.0394131312993079	0.8668522731895	0.969114221403526
Merged-chr2-18997616-3	chr2	18997127	18998127	+	908.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_024323)	promoter-TSS (NR_024323)	494.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	6.06936373091221	6.52650120758402	6.3221264326919	6.19764664207941	6.24543040438357	6.36276846961664	-0.0921619083246763	0.755138580118963	0.939242515534853
Merged-chr2-93849221-2	chr2	93848721	93849721	+	771.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290782, intron 1 of 14)	intron (NM_001290782, intron 1 of 14)	578.0	NM_183220	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	5.2261952355795	5.71606586582131	5.48358427660066	5.23473116775897	5.34188670009537	5.62659520638145	-0.176729851121722	0.62981859100491	0.894377678440432
Merged-chr4-133692048-2	chr4	133691548	133692548	+	841.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001080819, intron 10 of 19)	B1_Mur1|SINE|Alu	-18882.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.48096271988535	3.44999221878371	3.49956195475553	3.51385408946052	3.85643526967119	3.67829438793172	0.778294337664044	0.17236097099967	0.550874360596261
Merged-chr17-67196483-2	chr17	67195961	67196961	+	719.75	f0_balb.idr|f1_balb.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	157998.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	2.92692303872818	2.94524217345367	3.38613463294023	3.10638083207763	2.96731764295849	2.891854340745	-0.464629540532433	0.513197931241362	0.842416687973146
Merged-chr11-93988092-4	chr11	93987599	93988599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7992.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	7.59844035400979	7.54033222912361	7.35918726444496	7.46459722320537	7.5305484716928	6.97878031989599	-0.217774648895671	0.408860928788321	0.782383854304252
Merged-chr5-103628688-3	chr5	103628179	103629179	+	846.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029415, intron 1 of 5)	intron (NM_029415, intron 1 of 5)	724.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	3.66023200108853	3.32029816928597	3.49542289189332	3.17393151683685	2.89399271688734	3.6168392748844	-0.914375942907241	0.202843542674592	0.592772302593993
Merged-chr13-58403759-3	chr13	58403291	58404291	+	857.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001301341)	promoter-TSS (NM_001301341)	-448.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	5.83244114104594	6.03668842090175	5.89744620312414	5.74903349378605	6.14694082466473	5.78166796512573	-0.0142444776445766	0.964394648310774	0.991478598183903
Merged-chr5-30649997-3	chr5	30649493	30650493	+	868.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2054.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	6.92870501721123	7.24945027229557	7.00753922668369	7.15509594048448	7.10233720647795	6.92531420763915	-0.00621208198436391	0.980454801537177	0.995512982807197
Merged-chr17-78200172-4	chr17	78199606	78200606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_015800)	promoter-TSS (NM_015800)	-142.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.98239475533934	5.98165552733306	6.29500426885566	5.90801375102186	5.58702114283941	6.08008199348401	-0.393369870663136	0.226325264388435	0.621278132925779
Merged-chr16-31080756-3	chr16	31080261	31081261	+	845.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	CpG	671.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.39797637212015	4.21267937080968	4.42581086302083	4.33427901711529	4.3369643812818	4.31959061469788	-0.0350492147743756	0.937448268377316	0.986057836872162
Merged-chr11-60936154-4	chr11	60935657	60936657	+	984.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008928, intron 1 of 11)	MIRb|SINE|MIR	4100.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	7.44817976169018	7.52838106563432	7.17499007802776	6.99546829920429	7.20028655620379	7.32636330819008	-0.329966552663305	0.189734905057703	0.575767774402458
Merged-chr5-140830606-4	chr5	140830110	140831110	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010302)	promoter-TSS (NM_010302)	-179.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.61588654752401	5.17924826341238	5.2250676747335	5.49905038140228	4.84727188172343	5.41407073671752	-0.161653078071649	0.692355222686299	0.918650529720169
Merged-chr10-78480049-2	chr10	78479549	78480549	+	761.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-15101.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	2.69147415531829	2.7619502318849	2.7803865439664	2.69918124010596	2.60071623601214	2.60269167341568	-0.60345479817315	0.417810719542433	1
Merged-chr1-37996310-1	chr1	37995810	37996810	+	631.0	f0_balb.idr	intron (NM_172054, intron 1 of 4)	MTD|LTR|ERVL-MaLR	898.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	5.84900269858917	5.73533017958042	5.65329925390923	5.88093222663411	5.94485908547182	5.57118285404681	0.122582431627267	0.701429566721673	0.921305535334185
Merged-chr3-104432016-3	chr3	104431588	104432588	+	880.366699	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	79830.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.37433292927083	3.44646654769709	3.34439719647339	3.03851183168447	2.91920748379481	3.30507611158695	-1.3072980025284	0.0496967280882727	0.283613541724852
Merged-chr15-77831476-4	chr15	77830981	77831981	+	912.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	10694.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	3.9702770897536	4.26458596278747	4.14408981170761	3.99507495986973	4.05439748340431	4.25633042469378	-0.0933738086397648	0.84864711813847	0.964356989789491
Merged-chr18-7608765-2	chr18	7608261	7609261	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360860)	promoter-TSS (NM_001360860)	-607.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.38024570475897	2.35665236531268	2.39967347144401	2.91115217565117	2.85259309564632	2.93065573975895	3.56717170399525	0.000234056504412277	0.00568624047274067
Merged-chr10-19907475-4	chr10	19906981	19907981	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008822, exon 1 of 10)	exon (NM_008822, exon 1 of 10)	193.0	NM_008822	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	7.84358674246131	7.66745464926781	7.47666083750084	7.8289230510254	7.4945414835589	7.49167701056712	-0.0876839894829252	0.723331078669988	0.929040077703945
Merged-chr1-171564475-4	chr1	171563988	171564988	+	849.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018729, intron 1 of 8)	MTC-int|LTR|ERVL-MaLR	5295.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	3.48006302056365	3.63016937375265	3.35051812477077	3.33217986400523	3.22340994330952	3.30587327390272	-0.829647346148728	0.172318679979726	0.550858378107229
Merged-chr9-61957762-2	chr9	61957262	61958262	+	956.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028748, intron 7 of 7)	intron (NM_028748, intron 7 of 7)	-10963.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	3.87583715981762	4.23764503049673	4.62721642315686	4.77383096429911	4.76685496447779	4.49132824706569	1.03655068338019	0.0383286884584297	0.24240879297362
Merged-chr9-109053904-2	chr9	109053404	109054404	+	645.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	-962.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	6.2486783387517	5.98556037613552	6.47837500091065	6.11034746710288	6.32613532252777	6.5206420584345	0.135592780161441	0.659989412918455	0.905810817177861
Merged-chr4-128654632-4	chr4	128654114	128655114	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001195130)	promoter-TSS (NM_001195130)	-88.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	6.50284260691333	6.25552363563351	6.30680219403122	6.2854694031256	6.11368439213675	6.04494386798372	-0.345259332639987	0.226786607196735	0.621775091254891
Merged-chr6-72383418-2	chr6	72382918	72383918	+	901.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2950.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	4.26278704421016	4.16018451940909	4.45002709891758	4.53712860102997	4.53955558081348	4.67446570218788	0.753562491158351	0.0863266515605721	0.389215722284314
Merged-chr11-79279661-2	chr11	79279161	79280161	+	813.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24966.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	5.10641041589454	5.00199144175614	5.4432274566889	5.33205456160818	5.35755230043628	5.30001437941022	0.300114496965353	0.407344552322743	0.781483992042557
Merged-chr5-146810121-2	chr5	146809621	146810621	+	729.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER17C|LTR|ERVK	-15165.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	5.52323854732152	5.82776111453078	6.09479390585536	6.09827147992721	6.44072257741513	5.71710551674131	0.526881165219582	0.143500089261425	0.505668717539688
Merged-chr1-161876870-4	chr1	161876352	161877352	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357401)	promoter-TSS (NM_001357401)	-170.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	7.64345320806994	7.90957986065538	7.13703937641082	7.59761808569447	7.80604986164629	7.3345726757183	-0.0173663205225839	0.952812996585703	0.989289541051949
Merged-chr16-90830059-4	chr16	90829557	90830557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-802.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	4.33825692389096	4.28397470117773	3.91540674111977	4.11800570859716	3.94077132950147	4.27809373938634	-0.253307985958927	0.615710636675574	0.888073730124794
Merged-chr11-85684492-2	chr11	85683992	85684992	+	941.3000490000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	35252.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	5.57471238319274	5.74941986339317	5.52526762565719	5.65773174747943	5.68299737398231	5.58817562315829	0.0379603207822487	0.905294024955402	0.978279198518346
Merged-chr11-118144334-1	chr11	118143834	118144834	+	544.0	f1_balb.idr	Intergenic	Intergenic	-15115.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.65270397988251	3.56188690570947	3.45462617898613	3.63773261683731	3.62738438299261	3.63741631641775	0.245185702258979	0.660176514317264	0.905906890165946
Merged-chr2-25022886-2	chr2	25022386	25023386	+	617.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146251, intron 20 of 34)	B2_Mm2|SINE|B2	-31493.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	4.2723624677966	4.3932217266099	4.22516292163663	4.24890104754812	4.45752520897196	4.19854096816147	0.0344993688187207	0.940190779700148	0.986792088790777
Merged-chr1-151250347-2	chr1	151249847	151250847	+	686.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-94139.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	7.67189626456888	8.14708717184603	7.70173362198959	7.60157747523131	8.04285982640608	7.11817425425362	-0.298388218024675	0.342308627848827	0.731283521951228
Merged-chr2-129545658-4	chr2	129545163	129546163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9061.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.71415255122787	6.42149313802492	6.49592930863238	6.41809334565061	6.61705170677394	6.50152051842298	-0.0539580787858818	0.843083337794521	0.963298890080283
Merged-chr13-55593150-4	chr13	55592637	55593637	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026211)	promoter-TSS (NM_026211)	2.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	5.69863479832913	5.49956497259116	5.63045946690465	5.94835300902193	5.64207693973143	5.60918556061197	0.245219892094047	0.452796421891031	0.809457484278845
Merged-chr10-78139221-3	chr10	78138677	78139677	+	862.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	30591.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	4.61111126141919	3.94750559497128	4.15625986601762	4.46912014532214	3.83731266639225	4.17805165119599	-0.231445291569723	0.676470420898152	0.912525597578286
Merged-chr4-3796108-3	chr4	3795615	3796615	+	887.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39540.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.12085669377917	2.78321750402502	3.29545675600042	2.78122793825558	3.06817144868201	3.20617532763206	-0.229773647623511	0.757062290712715	0.939819795914786
Merged-chr13-3539075-3	chr13	3538554	3539554	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	979.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	6.77141104842675	6.98203757255271	7.18567204025457	7.06547962781475	6.96478657352872	7.28795430356986	0.186313556263719	0.480208806470284	0.824537487093219
Merged-chr7-114311422-3	chr7	114310948	114311948	+	656.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35332.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	2.95590557277935	3.13094680924423	3.07598051136052	2.87400989884907	2.61473943093732	2.78387297094069	-1.53291170638823	0.0389531718954011	0.244739069615078
Merged-chr14-30550032-4	chr14	30549507	30550507	+	972.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	876.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	6.30421056970586	6.25293542974911	6.88314852836402	6.41380583503526	6.41991695905888	6.28071592224247	-0.202394263431408	0.516489269123459	0.844290327414415
Merged-chr5-137294532-4	chr5	137294024	137295024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027356)	promoter-TSS (NM_027356)	-145.0	NM_027356	70240.0	Mm.124666	NM_027356	ENSMUSG00000051502	Ufsp1	2700038N03Rik|D5Ertd655e	UFM1-specific peptidase 1	protein-coding	6.70202058534487	6.83537135109578	7.08405113912478	6.65383318366259	6.87514506893965	7.00392017953825	-0.0412961275373064	0.878246457365418	0.971842464414451
Merged-chr3-98033076-2	chr3	98032576	98033576	+	804.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19538.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.37796538410108	5.09248354307623	5.09398808729367	4.9445225370947	4.84093500465025	5.01910773934039	-0.573325962136739	0.1264446598366	0.475355519288444
Merged-chr11-53793232-2	chr11	53792732	53793732	+	551.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_033332, intron 3 of 3)	RMER15|LTR|ERVL	22759.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	4.84268904262667	4.82515404996627	4.70016310174582	4.97499705919163	5.09136151588144	4.95966265143429	0.483324230269886	0.204992536068584	0.595693287839612
Merged-chr11-100395429-4	chr11	100394934	100395934	+	968.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2356.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	5.87714363910132	5.72378218250955	5.39304507922689	5.82315787969595	5.39693898207251	5.45756197938177	-0.216734793622619	0.54229585775618	0.857067349203709
Merged-chr17-36189522-2	chr17	36189022	36190022	+	779.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008208, intron 2 of 5)	intron (NM_008208, intron 2 of 5)	629.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	2.3286652998441	2.18952627915935	2.36580553056379	2.03407129687273	1.98469483557908	2.31362868306793	-1.35690367819539	0.1536781501346	1
Merged-chr19-3368419-2	chr19	3367919	3368919	+	709.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 9 of 18)	B3A|SINE|B2	-20438.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	1.8507662938479	1.82219095321272	2.17499285311752	1.78304575996733	1.68650677507992	1.78616364221714	-1.88306800460465	0.0793558465861195	1
Merged-chr10-99183033-2	chr10	99182533	99183533	+	726.166626	f1_balb.idr|f1_c57bl6.idr	intron (NR_153333, intron 11 of 12)	B1_Mur4|SINE|Alu	74898.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	5.98201141967586	6.00789591849578	5.69460746328614	5.81039879045426	5.97281660606481	5.67287115120019	-0.136617124441126	0.665967928521158	0.907947624137969
Merged-chr14-76010901-4	chr14	76010423	76011423	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026816)	promoter-TSS (NM_026816)	-58.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	6.20877575260744	6.64402574308261	6.30588249444673	6.62635943176066	6.59523079504064	6.49989724552998	0.273920263582918	0.336867282948963	0.726861060604748
Merged-chr1-120524369-4	chr1	120523863	120524863	+	984.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19339.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.67124670406598	3.69720311766714	3.84052718384424	4.55765717953037	3.84805554508947	4.20452195634872	1.49441331281269	0.00676868443174439	0.076274200189137
Merged-chr10-120666723-2	chr10	120666223	120667223	+	701.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-99009.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	2.85364526251645	2.74167302905137	3.28031158622908	3.04032901146033	2.62992502613844	2.84302596424229	-0.60014113544371	0.43842056794141	0.800536502226035
Merged-chr17-71207414-4	chr17	71206885	71207885	+	849.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	PB1D10|SINE|Alu	2731.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.88938432557464	4.676368394466	4.79445681528444	5.489639173117	5.68754789788945	5.2990318816836	1.49773178177456	5.89934952465899e-05	0.00181000396477812
Merged-chr7-28388050-2	chr7	28387550	28388550	+	760.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_026042, intron 3 of 3)	intron (NM_026042, intron 3 of 3)	4640.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	4.10544018701326	3.7061760137266	4.30123042393888	4.04007810991915	3.68044937628973	4.3271423522848	-0.0559632041644675	0.922007946872541	0.982542868764899
Merged-chr3-142577286-4	chr3	142576779	142577779	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	16923.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	5.32474299169811	5.35150559637526	5.67822068404383	5.67417980639329	5.70792871492477	5.60786063661883	0.413529457455551	0.212799080685103	0.605400742325823
Merged-chr17-6105730-2	chr17	6105230	6106230	+	691.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1100.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	4.35401609278322	4.32991220612972	4.53215939193455	4.48260732001337	4.33001379768075	4.59796492679945	0.165464717476798	0.7069613409271	0.923161381966479
Merged-chr17-55892708-2	chr17	55892208	55893208	+	655.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145490, intron 1 of 3)	intron (NM_145490, intron 1 of 3)	615.0	NM_145490	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	5.81945790455225	6.09580335537631	5.74368235689069	5.81419184483179	5.98451164265456	5.95624660151122	0.0295152301307612	0.924392135263042	0.982960139621551
Merged-chr11-55453825-4	chr11	55453349	55454349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	7359.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	7.60004791200319	7.5093958505329	7.29533443316925	7.36462342034867	7.47649326927113	7.27023917871179	-0.150939257321672	0.525217862698758	0.848902078814286
Merged-chr1-171844364-4	chr1	171843878	171844878	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	4681.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	7.86833189546781	7.95976099464791	7.70741160167437	7.95705914244581	8.4020197460933	7.8173319609621	0.341117389148255	0.183299406483202	0.566377400373361
Merged-chr1-189799152-4	chr1	189798651	189799651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	70883.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	4.80987804039612	5.3480400667304	4.97670025981555	5.34392836779445	5.2470669378953	5.28236430637771	0.442510970178666	0.252595683152164	0.649948429823529
Merged-chr5-101940737-2	chr5	101940237	101941237	+	670.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	129184.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.20852086622105	2.92617147819532	3.19471494948191	2.84479587507266	2.97823362392573	3.15454646191621	-0.537654883654678	0.437150958388939	0.79976715856888
Merged-chr18-67715282-2	chr18	67714788	67715788	+	553.5	f0_balb.idr|f1_balb.idr	intron (NM_008977, intron 1 of 9)	MTC|LTR|ERVL-MaLR	9333.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	2.64756142204228	2.67593368983	2.8404173069157	2.84245111201559	2.89353826260297	2.66363998373941	0.468845907638972	0.52667199824999	0.849587221577657
Merged-chr10-30655860-4	chr10	30655359	30656359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	8.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	6.49834331515422	6.37771263156246	6.38326629207676	6.6907734692358	6.88851880695983	6.30106415708241	0.386480693508591	0.184639721030813	0.5683870480034
Merged-chr5-108269438-3	chr5	108268928	108269928	+	893.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_026106, exon 1 of 3)	5' UTR (NM_026106, exon 1 of 3)	531.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	6.70325405317737	7.09187244801733	7.11191000932907	6.94948451471669	7.08979866342617	7.46104635010753	0.301966466289612	0.28448802730167	0.682238657188254
Merged-chr9-25261202-4	chr9	25260709	25261709	+	832.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	8317.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	3.87083241278959	3.77775455356433	3.88777165267364	4.11724768591832	3.90267334529188	4.18850856579428	0.685847759784108	0.176019614990594	0.556183038586686
Merged-chr3-8981421-2	chr3	8980921	8981921	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17275.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.2234782150208	7.14593953495172	7.00209258265667	6.95582255498045	7.06009598083732	6.67646116685671	-0.323621486329573	0.209453724184739	0.600992554015832
Merged-chr13-21787395-4	chr13	21786898	21787898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	-90.0	NM_178202	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	6.29262429653902	6.49347016186365	6.07882575493171	6.12171100530209	6.45657011456429	6.38961316736566	0.0384974320115501	0.89724067857329	0.9759638755172
Merged-chr19-29812966-4	chr19	29812452	29813452	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177721)	promoter-TSS (NM_177721)	22.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	6.68817653172465	6.83488486280675	6.43189962341788	6.58828386528433	6.69226002232811	6.33137364331988	-0.18296295508577	0.518737992659852	0.84542522050122
Merged-chr14-70768202-3	chr14	70767677	70768677	+	818.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1549.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	5.78248658399493	5.72860938090873	6.23759546834483	5.99780768274194	6.09351783354107	6.2005307933306	0.303191693570319	0.341684024744576	0.730935106878357
Merged-chr11-50275075-3	chr11	50274525	50275525	+	916.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	17311.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	4.92183342756323	5.10067705445057	4.91057195236378	5.08053371387249	5.18010658547939	5.11913365194479	0.303420542403596	0.409048409572673	0.782475057789391
Merged-chr17-70748167-4	chr17	70747639	70748639	+	930.0380859999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	98638.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	7.58576865324027	7.83769930207316	7.41882555026987	7.04070992994891	7.01279941088624	6.97160421575961	-0.924255104367926	0.000172058757424157	0.00443240405193475
Merged-chr10-127311237-4	chr10	127310738	127311738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001003913, intron 1 of 20)	intron (NM_001003913, intron 1 of 20)	548.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	7.37681281250079	7.12401473136692	6.82913986240369	7.28214902367039	7.39886263577406	6.99355043069491	0.157038812326066	0.570412823122668	0.869196267207969
Merged-chr9-27030673-4	chr9	27030175	27031175	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	500.0	NM_178113	78658.0	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding	6.68120481436616	7.06031919223866	6.87139638083289	6.80611240194768	7.05222355671139	7.03913782504325	0.136087029095605	0.606858322607848	0.884349416059017
Merged-chr10-16751721-4	chr10	16751223	16752223	+	827.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	344059.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	3.58969941969422	3.78528208545546	3.5876096797616	3.55717438821234	3.88674942060527	3.76505033846494	0.287367491162654	0.607213023194687	0.884448083779426
Merged-chr4-135963637-4	chr4	135963131	135964131	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-94.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	6.38251944845328	6.59082939190279	6.51917996391143	6.51549213208515	6.5122326827412	6.22976665328855	-0.105218896462999	0.702876857634928	0.922010618774232
Merged-chr2-68873912-4	chr2	68873401	68874401	+	975.5208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	12460.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	5.36471194874686	5.5866056709499	5.70606357318854	5.74757251459719	6.02655425299454	5.86756879557308	0.617716429632975	0.0566967052319749	0.306941812059939
Merged-chr1-156537861-4	chr1	156537298	156538298	+	913.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20989.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	6.47331486113847	6.27467101695499	6.17161991288225	6.0758759566963	6.39877054293997	6.18917940231894	-0.13735261250152	0.639049614772732	0.897861309727799
Merged-chr9-65741139-3	chr9	65740637	65741637	+	937.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64589.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.92503193876242	6.04177540405391	6.12104780706894	4.31853308621763	4.22794141124479	4.59200399640875	-3.71446787360078	1.38076302636104e-18	7.31786814633438e-16
Merged-chr6-31387654-2	chr6	31387154	31388154	+	721.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	MTE2a|LTR|ERVL-MaLR	11119.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	2.00600512677482	2.18198994668803	2.04799992964382	2.27507197246952	2.26161167074622	2.64270410635239	2.28712472915085	0.0208392452284765	1
Merged-chr15-67087598-3	chr15	67087080	67088080	+	741.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	89302.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.15813887384053	3.18185672041005	3.25855736092571	3.09749449292195	3.06550819055135	3.0401957956183	-0.56795727112119	0.377334580710304	0.759745820832962
Merged-chr5-92353185-2	chr5	92352683	92353683	+	692.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310664, intron 2 of 10)	RLTR13D2|LTR|ERVK	-4294.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	7.34112835668396	7.16002425947107	7.16549461199942	7.34622529350704	7.69488454642223	7.22316745990721	0.326835757335105	0.202884558211011	0.592772302593993
Merged-chr3-142279410-2	chr3	142278910	142279910	+	662.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-109985.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	3.0658684791392	3.25827959595586	3.19964024102899	3.63511384444498	3.08502708278132	3.38848829707939	0.838024644794714	0.206739225221641	0.59734556053345
Merged-chr18-23869837-2	chr18	23869337	23870337	+	808.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65867.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	6.79531430592974	7.14774205555427	6.6112187864368	6.34676234258344	6.56867405323411	6.14950381359856	-0.793766304949667	0.00854681030722869	0.0902834825496871
Merged-chr6-71440727-4	chr6	71440200	71441200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024288)	promoter-TSS (NM_024288)	-63.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	7.50308232009724	7.22529334754604	7.44464546312404	7.61030311476373	7.4903306120757	7.2320311844762	0.0956071348744516	0.698837097115809	0.920452394037037
Merged-chr7-100845621-4	chr7	100845124	100846124	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_177073)	TTS (NM_177073)	17789.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	5.86089174296435	5.67832048991815	5.74405665677518	5.4785530030421	5.398101960668	5.67686877004502	-0.468483054905592	0.146839282828458	0.511240993378934
Merged-chr6-5092028-3	chr6	5091466	5092466	+	742.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101980.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.92611660938202	3.85531097874272	4.26872211094667	4.05182440566514	4.09762114725676	4.07001864363969	0.165853965198348	0.741270569138573	0.934802565252866
Merged-chr18-56467356-4	chr18	56466881	56467881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35249.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	5.52090121153452	5.59844667147448	6.15519325673776	5.7765068106046	5.71532278610424	5.70198435115385	-0.0789786801192644	0.820987492368601	0.957917721861197
Merged-chr16-31696489-2	chr16	31695989	31696989	+	602.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357281, intron 1 of 22)	intron (NM_001357281, intron 1 of 22)	941.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	5.54227925143411	5.83181976604715	5.48786139181292	5.76828224381932	5.65197541260466	5.06265539163712	-0.173785062069551	0.647722752297496	0.901510214793849
Merged-chr1-43912979-2	chr1	43912479	43913479	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Tigger17c|DNA|TcMar-Tigger	-21015.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	7.5922098935815	7.74305387671219	7.50785054112305	7.56069400569681	8.08547604550077	7.69024964738292	0.267147734923854	0.294713657999048	0.691613336006565
Merged-chr17-5429576-4	chr17	5429066	5430066	+	991.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	10694.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	2.02569706497626	1.95651988613709	2.08431622261477	1.76665886287406	1.76354053449244	1.74903179189023	-2.58937154664866	0.0218525773901093	1
Merged-chr4-105477546-1	chr4	105477046	105478046	+	596.0	f1_c57bl6.idr	Intergenic	Intergenic	320199.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.23187407799338	3.35009834630838	3.28408802966719	3.40379770686599	3.13754071070255	2.98724225135633	-0.406437561460149	0.53829803438127	0.855080856348593
Merged-chr14-79515676-4	chr14	79515192	79516192	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	18.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	8.39939325833126	8.58231118256225	7.82000679771786	8.27209079604072	8.56362702956155	7.84020709312402	-0.0657558923505616	0.827138392888202	0.959351941492659
Merged-chr5-118556506-4	chr5	118556012	118557012	+	894.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4207.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.58419843376535	3.44457848915834	3.23524251708831	3.33626955488783	3.17399879393389	3.58656061670919	-0.247006997730853	0.697237699277321	0.919874864928276
Merged-chr5-120505516-4	chr5	120505019	120506019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1896.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	5.27299584311497	5.16023254363225	4.83987159492512	5.02919187695485	5.03565702342	4.64998557545904	-0.393678997798122	0.332166545572114	0.723387053255178
Merged-chr13-113417755-3	chr13	113417258	113418258	+	868.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	85086.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.67669117209185	6.77224005112338	6.64575044290598	6.52587410904902	6.70684635608623	6.81314815831297	-0.0289883236262891	0.911078210637658	0.980017061055921
Merged-chr2-27512588-2	chr2	27512088	27513088	+	879.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR13C1|LTR|ERVK	-2559.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.28121814704834	3.19863371085907	3.40435856367164	3.65456775243698	3.290600902743	3.47583819434163	0.720852781227628	0.240059904865664	0.637057344576547
Merged-chr2-14233596-2	chr2	14233096	14234096	+	848.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	4182.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	7.11377671729359	7.1671550335096	6.68525849582473	7.00327707605973	7.36770523894903	6.96466886469573	0.177443007816015	0.528841366099748	0.850585575598857
Merged-chr8-88631171-2	chr8	88630623	88631623	+	636.049988	f1_balb.idr|f1_c57bl6.idr	intron (NM_027840, intron 2 of 3)	intron (NM_027840, intron 2 of 3)	5005.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	2.71182972071796	2.82693702260659	2.78827114379999	3.17075258741562	3.09378174848733	3.48869141091737	2.31751041431358	0.00187842614082971	0.0294350437525723
Merged-chr9-85400652-4	chr9	85400169	85401169	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-73519.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.91875136590184	5.86826574956146	5.38844093241423	6.07444069221901	6.18325798367086	5.76130039003782	0.469751513625165	0.170968888384369	0.54894768530529
Merged-chr14-30631842-1	chr14	30631342	30632342	+	561.0	f1_c57bl6.idr	Intergenic	Intergenic	-5634.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	3.77229238133229	3.62847563730128	3.80183343043083	4.10326232318587	3.59711313544595	3.71452804545634	0.290029577937368	0.605348865798018	0.88352351689788
Merged-chr10-99262423-1	chr10	99261923	99262923	+	1000.0	f0_balb.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-808.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.30626247579618	8.40119612556402	8.18119595468147	8.39076104910691	8.55242685412544	8.13316879437902	0.104166308789425	0.646034577062329	0.900860469712294
Merged-chr11-98768373-2	chr11	98767873	98768873	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001313983, exon 10 of 10)	exon (NM_001313983, exon 10 of 10)	7004.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	3.93324032174951	3.62610291548482	3.90138797161535	4.34726187891019	4.13512399882311	3.92041569856236	0.97457497272738	0.0642796776279347	0.330363398151031
Merged-chr14-51088660-4	chr14	51088069	51089069	+	923.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2508.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	6.49117799717151	6.65833558640679	6.11619495525646	6.57264537958492	6.55776923991651	6.26735317057668	0.0425029093908077	0.88742594008713	0.973836995667151
Merged-chr11-69580839-3	chr11	69580397	69581397	+	952.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	538.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	8.34504158268818	8.68601455558649	8.48483328615151	8.51313099140343	8.91982926478692	8.56691922145694	0.235053256130218	0.316620428576865	0.710660560944371
Merged-chr19-5741989-4	chr19	5741478	5742478	+	874.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	1074.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	2.8338975483816	2.63246569859317	2.94654308943092	2.74835428100289	2.61640952387677	2.71955962147548	-0.596085408978938	0.424995896204827	0.792848465017231
Merged-chr7-4034455-4	chr7	4033958	4034958	+	854.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	28746.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	3.58665406667605	3.70807385796633	3.75625882290461	3.9331582253956	3.95763393812205	3.72057660360232	0.646839274438578	0.224689018496841	0.619609949365475
Merged-chr19-16016318-4	chr19	16015803	16016803	+	605.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31228.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	4.82622952507509	4.28792619919856	4.89755384605818	5.24446931068712	5.09827541477678	5.06825929394068	0.987985902273816	0.0209684820413455	0.166592691576469
Merged-chr3-108018583-1	chr3	108018083	108019083	+	710.666687	f0_balb.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-610.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	6.73398425957652	6.78393111330019	6.59736695852726	5.8493922918217	6.41088783737767	6.31102157429152	-0.797078420890979	0.00815994017670957	0.087249075073715
Merged-chr3-81141032-1	chr3	81140532	81141532	+	636.0	f0_balb.idr	intron (NM_001357746, intron 2 of 6)	URR1A|DNA|hAT-Charlie	104616.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	3.45005197025224	3.64609185633093	3.48952157093598	3.45186399544433	3.47857716602075	3.44912150025564	-0.269612672200292	0.64010749306661	0.898316174176291
Merged-chr7-4498400-4	chr7	4497900	4498900	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	3280.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	6.01206140181624	5.61441844549532	5.5085301768254	5.8137681364414	5.75044797994686	5.23653894562069	-0.185729939035153	0.616958540407215	0.8886099639993
Merged-chr12-73688235-2	chr12	73687735	73688735	+	990.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	103439.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.88928750229185	5.94746102677327	5.72247988371645	5.40474999036061	5.88687575178944	5.64858507671164	-0.342724540913	0.304934734190365	0.701230797737315
Merged-chr8-120486596-4	chr8	120486125	120487125	+	814.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2241.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.4043217264189	6.2891847471131	5.85632363930363	6.07367273041689	6.05016147752461	5.83895812111089	-0.372066299214474	0.239416616448727	0.636282788382435
Merged-chr7-142460743-4	chr7	142460348	142461348	+	998.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271509)	promoter-TSS (NM_001271509)	36.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	3.37263304534559	3.32518002234158	3.80839843421928	4.03242384474411	4.01406941901905	4.11190674080934	1.84139153236246	0.00153823137322754	0.0251707288305835
Merged-chr6-125516113-4	chr6	125515615	125516615	+	854.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21355.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.35048853615823	3.92826796629883	3.75506687410388	3.74163152294906	3.7134315439313	3.59720277136198	-1.11700727163873	0.0486122718648062	0.279830091064933
Merged-chr6-48840489-4	chr6	48839972	48840972	+	982.857178	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_023056, exon 1 of 7)	5' UTR (NM_023056, exon 1 of 7)	516.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	5.12195588912828	5.50300316727089	5.39112918796246	5.41736627415484	5.54465306296646	5.59609588439055	0.330783006739701	0.340857048629866	0.730566001298075
Merged-chr13-101918378-4	chr13	101917884	101918884	+	999.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-150167.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.35941041183325	5.64159143122717	5.69990127749003	5.5560357063121	5.61180021816983	5.73613890304079	0.117495745738921	0.721953299048242	0.928606209603791
Merged-chr17-46162275-2	chr17	46161775	46162775	+	866.5	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001357745, exon 1 of 12)	5' UTR (NM_001357745, exon 1 of 12)	211.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	5.05620546519089	5.303470634547	5.28585896757882	5.18176783082765	5.59462102315757	5.31811392074975	0.336212300561583	0.357314245324477	0.743882424811519
Merged-chr2-159900141-4	chr2	159899628	159900628	+	985.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47213.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.27644054474892	4.52072360316102	4.58468203501724	4.34750964446285	4.45177330119086	4.57177371618665	-0.0150499989500933	0.972800186921079	0.993881982649774
Merged-chr17-78402497-2	chr17	78401997	78402997	+	619.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 4 of 9)	MLT1B|LTR|ERVL-MaLR	15655.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	4.21227647209762	4.32156997431574	4.18200245566238	4.43693872615702	4.11041021449454	4.15487632659895	-0.00419248422227687	0.992902124463273	0.998605548488759
Merged-chr4-126227216-4	chr4	126226692	126227692	+	929.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24482.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	5.62095369411489	5.63216696420286	5.67821473801289	5.84352017236062	6.13751902819851	6.03277500483496	0.665503580195063	0.0301041609216485	0.209475357108058
Merged-chr8-10902659-3	chr8	10902159	10903159	+	879.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_102285)	TTS (NR_102285)	2737.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	3.61681576405903	3.26654432958006	3.36096281201918	3.55021900742958	3.56353567821947	3.49052637285413	0.403370549216034	0.499778263305765	0.834715972162707
Merged-chr18-23886873-5	chr18	23886299	23887299	+	703.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-67889.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	5.55270045020147	5.54057984171267	5.59651331383232	4.79379096482274	4.6282246813658	5.09788500936834	-1.51206470188392	5.19642033943872e-05	0.00163348599774846
Merged-chr15-95820743-3	chr15	95820243	95821243	+	898.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	9329.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	5.66900103786199	5.8689514292603	5.80404901753586	5.7353506526092	5.70614733414391	5.79047788173336	-0.0761674120980566	0.804551023158067	0.953651704501661
Merged-chr5-103725506-2	chr5	103725006	103726006	+	942.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-28656.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	3.54228182739344	3.57368486459756	3.67065712365719	4.07685972333557	4.24809510679697	3.74365355171009	1.47556321135635	0.00733243640520306	0.080842370266879
Merged-chr1-124071890-4	chr1	124071391	124072391	+	934.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26332.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.34205432204104	4.52951021277938	4.34945091263517	4.18813256868385	4.39805382825149	4.69726482603509	0.0581992275977868	0.89970651364073	0.976683360561224
Merged-chr15-57974879-2	chr15	57974379	57975379	+	658.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11024.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	2.68816152984701	2.61252879263949	2.89540073178275	2.64904705196301	2.47251451887789	2.79293716187253	-0.512161385242394	0.509053636782199	0.840223260520772
Merged-chr11-103406026-4	chr11	103405516	103406516	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6648.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	4.99011407904808	4.8091134864989	5.20912020096903	5.02539407426941	5.00931357926649	4.90240379074151	-0.0391492298675135	0.91901531460449	0.981900464792954
Merged-chr10-127320300-4	chr10	127319841	127320841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1623.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	6.13135553400385	6.07837911261203	6.12522263475058	6.11198219548985	6.190870234692	6.02970738774321	0.0136270909526199	0.961570724359133	0.990648883228567
Merged-chr1-163403735-4	chr1	163403243	163404243	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_132627)	promoter-TSS (NR_132627)	-74.0	NM_178883	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	4.63663831635676	4.38675452983632	4.53124242461822	4.45396512110056	4.42460899588713	4.18988993579819	-0.386765046977129	0.387559321844785	0.76768118438771
Merged-chr12-85337540-2	chr12	85337040	85338040	+	887.916626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145138, intron 1 of 21)	intron (NM_145138, intron 1 of 21)	1822.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	3.58806190474057	3.36843110271884	3.38057421944135	3.6232288165487	3.81727848254801	3.67386985616671	0.927924530130266	0.108002256984986	0.438972831145308
Merged-chr2-36243871-3	chr2	36243300	36244300	+	865.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	13374.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	5.18334005816021	5.53952555217694	5.90773986261098	5.94347970229576	5.62180445786199	5.92373310728345	0.488244295494689	0.183384028519632	0.566491618839527
Merged-chr16-91729217-4	chr16	91728724	91729724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	-147.0	NM_001110275	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.96825404524183	5.8422873105439	6.1291452616868	6.19262194144355	5.69876262112629	5.79602665779016	-0.113184457791947	0.728553058354749	0.930478966998914
Merged-chr17-31223960-2	chr17	31223460	31224460	+	734.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177823, intron 6 of 13)	intron (NM_177823, intron 6 of 13)	15894.0	NM_177823	328795.0	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	3.07319169254985	2.84934962034422	2.77562497992946	3.02269790965854	3.14847699483436	3.04062498402035	0.755578250298759	0.284779013905461	0.682457480121006
Merged-chr17-5576897-4	chr17	5576410	5577410	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	84310.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.81760725143412	6.71153409252624	6.73569647996949	6.81743536869331	6.74431943489584	6.48515005980273	-0.091177726327997	0.72697053438563	0.930086065338964
Merged-chr2-11189341-2	chr2	11188841	11189841	+	790.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008859, intron 1 of 17)	B3A|SINE|B2	16959.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.87133660979711	3.96156347888989	4.48128483452793	4.29622944963898	4.18152654746341	4.3052566339625	0.384717568553345	0.451973455556329	0.809286173636239
Merged-chr3-81046971-2	chr3	81046471	81047471	+	872.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10555.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.68179123243573	7.04230147715743	6.81167562909619	6.59348938109991	6.93864988591793	6.27389144126465	-0.327382097203885	0.283758464094635	0.681452732636412
Merged-chr18-39802264-4	chr18	39801751	39802751	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28754.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.24800032009987	7.0321725334884	7.18086870550413	7.41734990379827	7.60656200545738	6.87823707748145	0.287152136071562	0.311993206928145	0.706860127829592
Merged-chr9-71140731-2	chr9	71140231	71141231	+	810.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	21902.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	3.85134733401836	3.65578013682489	3.58465393411403	4.04670345257984	3.85347113279744	4.11487823960824	0.930908436313046	0.083536951815278	0.382571658015151
Merged-chr6-97426618-2	chr6	97426118	97427118	+	915.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	32668.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.80400282828647	4.74440978220423	5.24984717282463	5.0543303285575	4.95974556360147	4.96105025842426	0.119067811382626	0.766518307778618	0.94248431703451
Merged-chr2-79131449-4	chr2	79130945	79131945	+	874.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-123981.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	7.08570302691424	7.27286444878269	7.20761996504894	6.75135446009084	7.02266801443923	7.0958093109977	-0.345120468057274	0.170172249713572	0.547488402511962
Merged-chr16-23107403-4	chr16	23106898	23107898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001123037)	promoter-TSS (NM_001123037)	-70.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	7.82367082654706	8.03692631584125	7.6876920252549	7.90094059820206	8.11693124433878	7.76171978013593	0.112478560924221	0.638017551483896	0.897380718500389
Merged-chr11-8689047-4	chr11	8688536	8689536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24501.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	7.61753695430822	8.07774159615085	7.50490481682673	7.72835334581971	8.11315755501382	7.642206794238	0.12331361711962	0.656317903927214	0.904633251888013
Merged-chr15-53415557-4	chr15	53415069	53416069	+	696.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-69386.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	7.41732467135856	7.01313316519583	7.40187410502935	7.19011237543928	7.35972033911312	7.54746519561308	0.123133458436553	0.636809365223207	0.89723915288953
Merged-chr7-101547902-4	chr7	101547378	101548378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	7924.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.09302793466545	7.13865070356343	6.87227645458061	7.19525708351576	7.61918888668807	7.03284818690672	0.409491101347231	0.138842690723166	0.497816288606593
Merged-chr7-102250748-4	chr7	102250249	102251249	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-631.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	7.82427766133463	7.94375841202947	7.91608645400824	7.85515379400972	8.0033745303534	7.73154281168476	-0.0296729845877393	0.89287294461459	0.975146620821922
Merged-chr7-127480594-4	chr7	127480091	127481091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2c|LINE|L2	-4630.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	6.47462092953838	6.25865582076612	6.16496667802852	6.24188113635152	6.65035042345545	6.60371680372958	0.327080302520567	0.265076551681241	0.662839771217229
Merged-chr10-117824424-4	chr10	117823914	117824914	+	826.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 2 of 7)	ID_B1|SINE|B4	21560.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	5.89954050117528	6.16269734544828	5.93696272608945	5.89493418177023	5.85285771376268	5.90202231724025	-0.225353248712488	0.452354496508622	0.809370729412253
Merged-chr17-46155686-2	chr17	46155186	46156186	+	633.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2135.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	2.53755790639456	2.60587448545258	2.8885524916136	2.48884964841176	2.69341471439668	2.84611617948058	0.00216401833571337	0.997810905105763	0.999572789544564
Merged-chr4-48124486-3	chr4	48123975	48124975	+	946.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	-444.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	3.96890324666097	4.14560269661592	4.07828274807816	3.92655511904203	3.884869786228	3.74276319853577	-0.636227209543242	0.210299334306305	0.60239412634554
Merged-chr18-56572939-4	chr18	56572468	56573468	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019996)	promoter-TSS (NM_019996)	-29.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	5.82010367548429	5.98716252588325	6.33580565522962	5.72946625872082	5.89368932853606	6.15038183619245	-0.219138306069324	0.505158733494819	0.838033532640248
Merged-chr10-127665395-6	chr10	127664867	127665867	+	891.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008668, intron 1 of 6)	intron (NM_008668, intron 1 of 6)	1336.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	4.77152221759598	4.59798596149752	4.92671181811862	5.08460435783142	5.40315455088701	5.31925777343791	1.10819445224864	0.00394390988363703	0.0513881699965033
Merged-chr13-100601302-7	chr13	100600820	100601820	+	925.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	15624.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	7.7963413251953	8.0931543415366	7.28385822815617	7.47272920343181	7.93703130811975	7.59471866323329	-0.125784967958235	0.671026516797017	0.910289924720412
Merged-chr13-37825974-4	chr13	37825469	37826469	+	951.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	-69.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.13180115508558	6.18119733104454	6.38302007639856	6.12181608482394	6.07624655927795	5.91576515458332	-0.308966370398655	0.28741733258949	0.68466708875197
Merged-chr4-150855046-4	chr4	150854545	150855545	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	-25.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	7.32622942951783	6.86530329776641	7.23779505730118	7.20592975800501	6.8705752442887	7.24976631755905	-0.064768704329176	0.813803668366267	0.955940138311315
Merged-chr7-47053537-5	chr7	47053059	47054059	+	817.293335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026436, exon 3 of 3)	exon (NM_026436, exon 3 of 3)	2919.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	6.17214901154634	6.43344567749843	6.97145137224676	6.77333744000364	6.64978438794096	6.72536621733075	0.248577573389523	0.430756295224026	0.796567912992284
Merged-chr2-5715482-2	chr2	5714982	5715982	+	674.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-720.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.99733509846218	4.94677963359458	4.90964556755902	4.67226753406051	4.68477280063835	4.62422124181929	-0.665675868229011	0.0878133049725844	0.393175284123913
Merged-chr9-107611768-4	chr9	107611266	107612266	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2525.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	7.5831390210591	7.47816367078523	7.77075329447241	6.96445868418954	7.17138413971079	7.12919593038016	-0.76753556565615	0.00144377782501286	0.0240315793686078
Merged-chr17-36032756-4	chr17	36032254	36033254	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010398)	promoter-TSS (NM_010398)	-53.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	8.02039023732006	8.06332694585933	7.74021490733465	7.62124428842049	7.88437467187258	7.66915681139924	-0.314798310071723	0.17886190510273	0.560177193729651
Merged-chr4-123282701-4	chr4	123282217	123283217	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356377)	promoter-TSS (NM_001356377)	-194.0	NM_148917	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	5.88383833164625	6.06277319753383	6.15080241527796	5.99365762290691	6.20153255072451	5.89384618387729	0.0267574102779343	0.929541182057482	0.984182996007117
Merged-chr2-165949840-4	chr2	165949358	165950358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42779.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.7840967256704	6.00920116714761	6.18355988372058	6.44369928860172	6.48090351526133	6.76064975808514	0.299459367551037	0.373635145084439	0.757529198534216
Merged-chr4-53070689-2	chr4	53070189	53071189	+	674.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 25 of 49)	intron (NM_013454, intron 25 of 49)	58809.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.68382467752073	2.67421458674322	2.86551249121579	2.63232774863869	2.77561295390176	2.69587423677383	-0.182457199578622	0.805448258874334	1
Merged-chr5-31900118-2	chr5	31899618	31900618	+	850.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144541, intron 6 of 11)	Charlie20a|DNA|hAT-Charlie	202068.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	2.85048888085735	2.98661938616634	2.90025680504455	3.13431889466339	2.89957557382269	3.0925516921264	0.600802370452213	0.381854117828927	0.763488019903628
Merged-chr2-180970556-2	chr2	180970038	180971038	+	958.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_145760, intron 2 of 13)	intron (NM_145760, intron 2 of 13)	3238.0	NM_001177706	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	3.61746249043577	3.92483498152084	4.04517666888548	4.09879806322532	4.03622342336309	4.11334167890947	0.640919824423158	0.216277063544453	0.609723256086966
Merged-chr3-86999235-4	chr3	86998733	86999733	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007639, exon 1 of 6)	exon (NM_007639, exon 1 of 6)	107.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	7.50097895698313	7.85102695908627	7.67523809626415	7.30287312709079	7.67984030570693	7.30384739662878	-0.341458372551821	0.181230477804183	0.563574247882485
Merged-chr19-10691499-2	chr19	10690999	10691999	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	2764.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	5.70092725421553	5.38141365232423	5.71245497119525	5.58581248320518	5.50365741995567	5.87001971298097	0.0931577163461642	0.784287309770117	0.947513080979134
Merged-chr2-124775865-4	chr2	124775237	124776237	+	936.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122156.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.19761524476254	4.11530914182732	4.06931654900452	4.04920208910359	4.10701449411863	4.31870779580707	0.0704635464909325	0.882450222931797	0.973184220613163
Merged-chr7-19751192-2	chr7	19750692	19751692	+	998.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1619.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	3.37484621244764	3.60386620723115	3.38358453023947	3.40397643382264	3.19873893101503	3.61524293741411	-0.200210608757576	0.745958518459249	0.936251303305737
Merged-chr2-51014836-2	chr2	51014336	51015336	+	613.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	105152.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.95727018114887	4.05014227283478	3.95173169309703	3.97280850697232	3.85710205910847	4.06857429706012	-0.0831982730264323	0.867074497570599	0.969281921467367
Merged-chr15-99123426-2	chr15	99122926	99123926	+	833.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-3419.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	4.12162408893779	4.15716250756941	4.19220023477763	3.92022463881615	3.8652060442066	4.07751761797364	-0.608706766156689	0.211109671022538	0.603477171445767
Merged-chr6-97972017-3	chr6	97971516	97972516	+	902.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001178049, intron 2 of 9)	B4A|SINE|B4	-19767.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.06393370243032	4.25849463500622	3.83297412104191	4.12433609858237	4.19807465377532	4.16034812457719	0.248489338804153	0.618485481496201	0.889443702136265
Merged-chr10-44527299-4	chr10	44526830	44527830	+	869.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-68582.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.59827581632168	6.79326290824448	6.27385644231147	6.53767030327252	6.7920523393211	6.61996576340673	0.116783852742542	0.684610491354333	0.915930759709583
Merged-chr3-157635859-4	chr3	157635366	157636366	+	990.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	68974.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	2.57705033795149	2.62644399188651	2.43816347054943	2.65936411300645	2.51976589436753	2.70703596760669	0.421148211292849	0.59128253746916	1
Merged-chr2-128751696-2	chr2	128751196	128752196	+	806.833313	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 5 of 18)	URR1B|DNA|hAT-Charlie	52781.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	5.62583918303851	5.64624131864831	5.87247105174149	5.91019746756573	5.93789079828471	5.83666727069667	0.340387669529796	0.267022346551195	0.664525060919151
Merged-chr16-4893677-4	chr16	4893156	4894156	+	902.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	7556.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	6.63022719228231	6.71523996070313	6.45393981923817	6.45351976263165	6.49524074384551	6.06693836880816	-0.394381331825621	0.17118011680204	0.549159700769716
Merged-chr19-16143184-2	chr19	16142684	16143684	+	595.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	10353.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.36267265470119	5.59517876372128	5.54590164737211	5.32669158107236	5.14119916871184	5.7355230345677	-0.181403034161179	0.620992848188455	0.890443966155973
Merged-chr7-92980973-4	chr7	92980464	92981464	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-98915.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	5.05383194492481	5.09508556571602	5.13514217283347	4.867584027662	4.83488043929341	4.80671022023195	-0.55565091608971	0.135772179560427	0.492518955608463
Merged-chr13-100403113-4	chr13	100402611	100403611	+	934.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49753.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	4.91771773628407	5.65573978822137	5.85337166157916	6.29375652572944	6.51278060928115	6.28108826425604	1.46476486698352	0.00014054942126085	0.0037628173244121
Merged-chr9-90240986-2	chr9	90240486	90241486	+	947.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	29783.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.34081848764584	4.36627571395199	4.58173811192049	4.67375101742964	4.47046476924771	5.03177013934516	0.744359011609544	0.0979557128412325	0.417291460898387
Merged-chr6-17558132-1	chr6	17557632	17558632	+	663.0	f0_balb.idr	intron (NM_008591, intron 17 of 21)	intron (NM_008591, intron 17 of 21)	-78878.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	2.52025233050099	2.44761718757928	2.63785838069225	2.35856326569555	2.43310667053881	2.71054538119624	-0.177852723171893	0.82631152330467	1
Merged-chr10-116727440-4	chr10	116726970	116727970	+	930.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045345, intron 1 of 2)	L1MDa|LINE|L1	1707.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	4.96217833212943	4.8614609551923	4.771597332476	5.53720558289671	5.58803801068166	5.31683588272367	1.2691587646575	0.0004823997085551	0.0102214196459009
Merged-chr15-81536091-5	chr15	81535618	81536618	+	992.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50096.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	5.86029941486977	5.63668638519	5.73589541927406	6.34625316622227	6.46167827764636	5.97975264476357	0.93577537257762	0.00271312053533066	0.0389902130403789
Merged-chr10-98880300-4	chr10	98879796	98880796	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34346.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.85006689847034	8.93945959951553	8.50456755962211	8.74343313743961	9.13947297520954	8.52602595807442	0.0730583516517394	0.776146342600644	0.94480820353868
Merged-chr2-25623917-2	chr2	25623417	25624417	+	560.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007995)	TTS (NM_007995)	-1912.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	3.84177152238444	4.00625004745291	3.87877235698923	3.97102507237763	3.46239028360149	4.08968538254579	-0.153565589929595	0.788416242222287	0.948954880993192
Merged-chr11-106487890-4	chr11	106487378	106488378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-82.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	7.65429451472951	7.36947150535312	7.5454289374884	7.70362466600646	7.49664345784981	7.31498089622792	-0.0122535470191115	0.960131230791088	0.990335445597503
Merged-chr5-150674370-4	chr5	150673808	150674808	+	961.650024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175310, intron 1 of 34)	CpG	481.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	5.96826523382892	5.64823702718719	6.02516841969392	6.26553055716879	5.5841725915734	5.85242657075173	0.0784935369716267	0.824326153964827	0.958538023027357
Merged-chr2-11513730-2	chr2	11513230	11514230	+	861.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	ID_B1|SINE|B4	-11640.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	6.2097826730073	6.67576271086852	6.36812674082326	5.84794496628257	6.14975553023656	6.07918820399012	-0.672369550415589	0.029089510305792	0.204837770984063
Merged-chr11-78038353-2	chr11	78037853	78038853	+	869.25	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183286)	TTS (NM_183286)	412.0	NM_008028	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	4.33071447252944	4.26288781665772	4.28790585663913	4.22241052430175	4.00660702514893	4.43948380826003	-0.195875261499676	0.678996001741939	0.913553914280182
Merged-chr14-20834313-4	chr14	20833814	20834814	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2348.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.69234946773472	6.62436420324723	5.64915737188099	5.92801167962587	6.19397391153833	5.71416550994626	-0.741061423737398	0.0589335153031229	0.314201316162123
Merged-chr15-8169045-4	chr15	8168533	8169533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-73.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	5.57210293236813	5.89366488321417	5.84635597465124	5.68346221648236	5.84903886097142	5.95413687620339	0.0965810602091656	0.762024294367696	0.94140598764342
Merged-chr19-44067473-4	chr19	44066960	44067960	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145502, intron 2 of 10)	intron (NM_145502, intron 2 of 10)	2226.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	4.22785477545195	4.37567959752516	4.2701264353617	4.24803686374464	4.32889186977857	4.33783157509153	0.0281766377245712	0.950007894355009	0.988384895514575
Merged-chr1-143738897-4	chr1	143738365	143739365	+	845.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-484.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	4.87016890948065	4.92512905169976	4.57313619371873	4.96581553307522	4.7963995155644	4.45616474871788	-0.0955392626578334	0.824877969444238	0.958596193929081
Merged-chr10-34416769-4	chr10	34416280	34417280	+	784.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176968, intron 1 of 11)	intron (NM_176968, intron 1 of 11)	1771.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	4.80114986138303	4.72061828743138	5.13210840351456	4.7261823322974	5.14036946761341	4.60698831213251	-0.06019950145721	0.889844390651527	0.974313026039223
Merged-chr4-15995702-4	chr4	15995191	15996191	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_145950)	TTS (NM_145950)	18147.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	3.4790716346813	3.46888599433816	3.54410888474813	3.45332022683973	3.70072220790914	3.33060138586855	0.0695068482171271	0.907036288005885	0.978868492078838
Merged-chr4-108789451-4	chr4	108788949	108789949	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-8361.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	5.16086687979163	5.07846890686527	5.54091237763651	4.62665542675935	4.93236676178391	5.01758588999082	-0.842164834261437	0.0366678532408736	0.235675786533803
Merged-chr10-7832225-5	chr10	7831729	7832729	+	757.483337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172785)	promoter-TSS (NM_172785)	-241.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	5.28424668464008	4.99564386715781	5.0389684272306	5.1735367520188	5.08571734468172	5.30028054854117	0.135881572572588	0.711818035679016	0.92488881951279
Merged-chr13-105214314-5	chr13	105213826	105214826	+	765.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360891, intron 5 of 7)	L1MA7|LINE|L1	78688.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.26836647401882	4.5441590907106	4.59099444153853	4.42097996894596	4.61756952833397	4.7326164390458	0.301710322742088	0.492105327963922	0.830923925591469
Merged-chr6-134830110-4	chr6	134829613	134830613	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177687)	promoter-TSS (NM_177687)	-86.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	7.33308314623128	7.52037357883769	7.32289814715214	7.6516168482724	7.61044455719744	7.35725013399732	0.225232755653478	0.34206007501824	0.731142095278512
Merged-chr8-116973043-2	chr8	116972543	116973543	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357255, intron 2 of 2)	intron (NM_001357255, intron 2 of 2)	5610.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	2.47757428965351	2.34284216107068	2.54749540884981	2.21915734910254	2.26985624529039	2.23479717817952	-1.45069267714034	0.0964768020822252	1
Merged-chr16-23296985-4	chr16	23296489	23297489	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	6519.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.4788569193821	6.44008767909651	6.33323361425936	6.20765733504167	6.63192842987778	6.60816436392895	0.122853750064218	0.666791495608897	0.908385781568242
Merged-chr5-139795091-3	chr5	139794554	139795554	+	731.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	3518.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	2.68924560890231	2.55189895098273	2.67955705646716	2.50493915987102	2.3527903588652	2.62979625627827	-0.868533435715389	0.278315193271959	1
Merged-chr5-77460028-4	chr5	77459514	77460514	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5474.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	4.66234651015412	4.35214965861582	4.10943092966607	4.30969070210989	4.41647072411589	4.23071065086761	-0.203300810674763	0.671887708442934	0.910694246658612
Merged-chr1-144001531-4	chr1	144000983	144001983	+	998.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	2666.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	6.27812767168217	6.0114276332551	5.52562442528539	6.20879486646168	6.14972592638968	5.85461214004352	0.166026767149278	0.634501017217173	0.896350313439852
Merged-chr9-118618586-2	chr9	118618086	118619086	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	11877.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	7.38678418977676	7.43509603053647	7.15121034657424	7.23454104018026	7.08290718637031	6.98079729935595	-0.344015136936165	0.160548940293045	0.533208683746259
Merged-chr1-14577121-4	chr1	14576626	14577626	+	983.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	178840.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	3.50785826260834	3.44565842930813	3.43736046597058	3.56781737457677	3.41745077224172	3.61579898500823	0.241274653943145	0.674294333172328	0.911841916826811
Merged-chr2-30246007-4	chr2	30245481	30246481	+	874.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8212.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	6.02901302565181	6.07600415697086	5.79210697669954	6.56893683424665	6.36658950032624	5.55224808278378	0.450961399222723	0.228946221899752	0.624390600846758
Merged-chr8-61921211-4	chr8	61920710	61921710	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6877.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	7.82059975680026	8.13864212093944	7.48024323023005	7.75509483277659	8.13709040085686	7.66918411907231	0.0394529501744854	0.887481048403269	0.973836995667151
Merged-chr7-100992151-4	chr7	100991639	100992639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	19859.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	6.30390130209038	6.41206404765919	6.55274760343541	5.67938123525321	5.63677872879479	5.44919960261482	-1.42567671733928	3.11062215647129e-06	0.000146396294341439
Merged-chr3-81989830-2	chr3	81989330	81990330	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-7092.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	3.11371544616155	2.87187081134957	3.32092112108387	3.04826434346552	2.79052066939271	3.28631788910647	-0.253973626813373	0.726013968857884	0.929743505822386
Merged-chr3-96551996-2	chr3	96551531	96552531	+	797.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5926.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	4.51927971713295	4.19393750190917	4.45561802920355	4.59634737892081	4.88459993279345	4.83802780600841	0.937760509287083	0.0312190528747631	0.213942873471875
Merged-chr10-121571707-4	chr10	121571208	121572208	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019786, intron 5 of 20)	intron (NM_019786, intron 5 of 20)	15086.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.83554187518832	5.83309055489757	5.63724305221046	6.29714252793651	6.07637897407911	5.8121044983954	0.534242875513282	0.0920231373127474	0.404130533040539
Merged-chr6-97797747-3	chr6	97797247	97798247	+	938.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9311.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.67587546298129	4.58124632112835	5.16606595140635	4.58479349169372	4.5671878445237	4.98279429151313	-0.241247931958191	0.590947830687123	0.877301111216348
Merged-chr15-76510968-2	chr15	76510468	76511468	+	697.700012	f1_balb.idr|f1_c57bl6.idr	intron (NM_010046, intron 1 of 16)	intron (NM_010046, intron 1 of 16)	1026.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	3.62473447004039	3.39448411454532	3.72627422615276	3.82667135197587	3.63660061646168	3.7958324027387	0.578458768295033	0.302698367724793	0.699306599151639
Merged-chr5-139404099-4	chr5	139403648	139404648	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-2239.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	8.4673366601884	8.44844885478484	8.19482639128044	8.02235964214053	8.46242641714702	7.99159567649778	-0.2711682926315	0.268797929589157	0.66596594566353
Merged-chr6-71446421-7	chr6	71445924	71446924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5787.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	6.67100988286294	6.52681325139317	6.34055347898635	6.52559326709986	6.53692082594877	6.47687641083674	-0.0213521089257366	0.936809217171332	0.986037792257163
Merged-chr19-38396038-4	chr19	38395538	38396538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175507)	promoter-TSS (NM_175507)	58.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	3.86567405379424	3.63405663778852	3.62093756059421	3.85705228136409	3.38658021312625	3.63775037027699	-0.256405492469888	0.660846754563168	0.906190308182195
Merged-chr4-101779424-2	chr4	101778924	101779924	+	774.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146146, intron 13 of 18)	intron (NM_146146, intron 13 of 18)	62017.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	4.19343733347305	3.98988192750658	4.35957074154969	4.28814358206344	4.42948120203863	4.93294361874626	1.00182724430008	0.0425554671516454	0.258690481498693
Merged-chr7-83878359-4	chr7	83877846	83878846	+	931.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5995.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	5.52117033767422	5.33071797405728	5.1669025278914	5.63568669302121	5.79843395540821	5.61141830344119	0.628730277834592	0.0636456101652899	0.328767639677588
Merged-chr13-24830933-2	chr13	24830433	24831433	+	885.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	556.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	6.39043003708329	6.76961252731164	6.15882569184371	6.61029046450092	6.64149004523423	6.05228334121343	-0.00359404424199931	0.991374736140948	0.998232145282024
Merged-chr2-73386691-4	chr2	73386200	73387200	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190297)	promoter-TSS (NM_001190297)	-220.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	6.46940442918617	6.41553589348934	6.5206327924995	6.64744861049078	6.66235611986135	6.81750011785527	0.383605961241112	0.13786615190808	0.496296223517512
Merged-chr9-109056646-6	chr9	109056263	109057263	+	875.388916	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_026381, exon 4 of 4)	3' UTR (NM_026381, exon 4 of 4)	1897.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	6.52251218609676	6.27592854014507	6.61538900947719	7.06070389465306	7.08017318444345	7.15030731980857	0.975225415099409	0.000161703394054023	0.00422184374410014
Merged-chr5-3543829-4	chr5	3543344	3544344	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001042501)	promoter-TSS (NM_001042501)	11.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	6.59939431808354	6.70144578371417	6.41966045405108	6.57409131911128	6.16774661476327	6.38381164674785	-0.330106921287378	0.247543949237114	0.644481756199053
Merged-chr17-70855334-2	chr17	70854808	70855808	+	692.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1776.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.94829936004654	2.8973642332958	3.06746289753368	2.77318083985835	2.78522322790686	2.90712976428198	-0.742779473750606	0.289438059474626	0.68709875285059
Merged-chr19-10905488-4	chr19	10904987	10905987	+	939.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001253844, exon 14 of 14)	3' UTR (NM_001253844, exon 14 of 14)	6842.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	5.47377586992319	5.33453299256292	5.30803589411426	5.38809195164509	5.38209821462263	5.0983752844731	-0.139531401090529	0.689858435179646	0.917495512399022
Merged-chr1-62719438-2	chr1	62718938	62719938	+	850.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077404, intron 2 of 16)	L3|LINE|CR1	16121.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	3.91849811724605	4.10075644274936	3.75426148771829	3.52425919743025	3.42626425935341	3.92458069844308	-1.00366851162085	0.0836838628210132	0.38282729916423
Merged-chr14-66872771-4	chr14	66872278	66873278	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	3928.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	6.28285023483797	6.13497955964226	6.69019057771211	6.23427861466376	6.48619426732849	6.65817336918455	0.14295580615577	0.642678250080809	0.899466331938237
Merged-chr14-61676106-4	chr14	61675612	61676612	+	917.7291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	6261.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.53744946455306	4.67069174233517	4.89338640340324	5.14555335376217	4.82548395223369	5.30773313890616	0.880734831726932	0.0328834544813503	0.220972276255252
Merged-chr7-34448548-4	chr7	34448042	34449042	+	995.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58837.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	3.71107431521433	3.78097169355737	4.19614413136557	3.43526269791922	3.55943004986728	3.61694147956272	-1.23226989661095	0.0334544556499743	0.223319562432656
Merged-chr13-45266872-4	chr13	45266376	45267376	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-122866.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	7.97651376267335	8.06205831324328	7.50447560467676	7.52735047413091	7.78451070922022	7.60074815201958	-0.337502496065095	0.189375894258588	0.575199467401664
Merged-chr4-45530861-4	chr4	45530365	45531365	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-37.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	7.79074284495951	7.60234418186672	7.47722147067721	7.77625546313678	7.39031437361497	7.40608245336872	-0.140233668923233	0.575718631572536	0.87137539535607
Merged-chr8-72495369-2	chr8	72494817	72495817	+	564.416626	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027485, exon 3 of 3)	3' UTR (NM_027485, exon 3 of 3)	-2703.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	2.59189809085522	2.51587449616562	2.73724886012313	2.66371189401259	2.47361390975705	3.25195764024739	1.11127849833959	0.182397619817051	0.565196424421292
Merged-chr16-70353136-5	chr16	70352579	70353579	+	852.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028803, intron 1 of 15)	(GA)n|Simple_repeat|Simple_repeat	39130.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.68856136992521	3.84913126822658	3.6364606313338	3.8241486583802	3.69870162298563	3.86299029121979	0.193772107657262	0.717493174992081	0.927094417428739
Merged-chr15-84979787-2	chr15	84979287	84980287	+	565.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8184.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	4.69891237028367	4.8856792086041	4.94971651436888	4.84134349527985	4.87747951942427	4.97935465483701	0.118443929411741	0.759735778081682	0.940572672765463
Merged-chr7-132804185-4	chr7	132803687	132804687	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9009.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	6.23456093659687	6.66504649241797	6.07954420788913	6.0154404444304	6.11762363557571	5.8148209548961	-0.612719166453514	0.0567440602124655	0.307073345613868
Merged-chr4-137350917-1	chr4	137350417	137351417	+	1000.0	f1_balb.idr	intron (NM_009861, intron 1 of 5)	B3|SINE|B2	6842.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	4.817894101842	4.57728007444725	4.90317920473737	4.94979988337268	5.04873054234371	4.81926231779008	0.41309455055237	0.298465662300082	0.695174900936234
Merged-chr16-33933474-4	chr16	33932966	33933966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33572.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.01106292006899	7.39076209267111	7.23929376721115	7.25025285229724	7.43889762502954	7.22569671595947	0.133177797855762	0.595571156441314	0.879549293510723
Merged-chr18-70642755-2	chr18	70642255	70643255	+	746.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	74463.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	3.09779856926034	3.07296386598024	3.1153480977748	3.14833313760363	2.87469529655711	3.24367790638551	-0.015862115509499	0.981164657158057	0.995687678606673
Merged-chr12-33316637-4	chr12	33316120	33317120	+	965.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	14105.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	5.62327398214137	5.67818532875039	5.58167407386223	5.61341713961323	5.71493404143329	5.89864187541077	0.201212903356588	0.524812384788909	0.848833934932934
Merged-chr3-135440790-3	chr3	135440295	135441295	+	829.388855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1669.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	6.46331898043084	6.17789617877629	6.18762012677473	6.40710055367733	6.47281596996393	6.38950633632224	0.226502437010927	0.416949332120421	0.787755047048796
Merged-chr1-64374874-4	chr1	64374383	64375383	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-157921.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	8.14379973665117	8.02558861536546	7.95919026202022	8.05387325109081	8.30857540886286	7.75586534301134	0.0305769267555649	0.900228378365196	0.976731893119283
Merged-chr10-59265329-4	chr10	59264840	59265840	+	915.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43418.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.79713614524741	7.04694242778106	6.85847605146624	7.13338761678865	7.36162439228754	7.04437428071212	0.434103593194026	0.0887058741562106	0.395363349766456
Merged-chr2-30828358-4	chr2	30827858	30828858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133346)	promoter-TSS (NM_133346)	-58.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	6.48413830006911	6.95066700156133	6.580088897551	6.43666171468057	6.66446496387884	6.53439927913281	-0.225420659259287	0.430953923448986	0.796614699034595
Merged-chr6-29269369-2	chr6	29268869	29269869	+	638.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEd|LINE|L1	-3119.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	5.46100907425473	5.27303777337517	5.55889490686516	5.15201445537584	4.97028652382918	5.24576699599794	-0.630507227187566	0.0781721568995274	0.36922000518226
Merged-chr1-43321662-4	chr1	43321167	43322167	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124084.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.53073963355753	6.29237593197718	6.12166023932996	6.70568682772558	6.92985674768968	6.4950926045697	0.636189509889238	0.0299964278875975	0.208935440454647
Merged-chr6-136722142-1	chr6	136721642	136722642	+	582.0	f1_balb.idr	intron (NM_145067, intron 16 of 25)	B3|SINE|B2	59600.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	2.85215830084811	2.53623983646374	2.69348820791626	2.96865241455695	2.74478967637763	3.07051969316268	1.16275466554093	0.129865724267581	0.482060341820603
Merged-chr8-72485650-2	chr8	72485160	72486160	+	861.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 4 of 5)	B4A|SINE|B4	6954.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	3.4298455780839	3.762506542417	3.70973108100065	3.75108565074092	4.07214497370525	4.47954759536862	1.50118640494668	0.0104702333794313	0.103735942230873
Merged-chr14-20731997-2	chr14	20731497	20732497	+	813.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010811, intron 2 of 14)	B3|SINE|B2	2565.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	6.27711250210962	6.12942608961535	6.389887745464	6.71699226250596	6.741569525859	6.70562667896208	0.744009049944394	0.00498206038899388	0.0610706070782856
Merged-chr6-29794764-4	chr6	29794285	29795285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	26342.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	6.68243012017186	6.78164496486322	6.79785738028777	6.86000363166854	6.91662608706933	6.54166055248009	0.0638622205397868	0.808434181633736	0.954683711776353
Merged-chr13-96455529-3	chr13	96455029	96456029	+	893.2777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001042714, intron 2 of 13)	intron (NM_001042714, intron 2 of 13)	15631.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	3.45286634959232	3.50974817630334	3.43306777990793	3.43678220563905	3.2466885111868	3.44896065965955	-0.354122295463609	0.549589071152106	0.860377701498819
Merged-chr8-13673864-2	chr8	13673364	13674364	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3723.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.37994410101636	7.29014772460718	7.43224510633265	7.33965701166719	7.38449033715551	7.10628809219681	-0.112162755059125	0.635867793478621	0.896829421389054
Merged-chr2-52966426-4	chr2	52965900	52966900	+	929.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	108532.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.64050051083348	5.3435086665289	5.71906928614275	5.5455608878488	5.31099717312843	5.67983564788897	-0.114260653406911	0.742743393305164	0.935362285201763
Merged-chr7-27481112-2	chr7	27480612	27481612	+	881.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	L2a|LINE|L2	-5841.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	4.09651510041221	3.85108822435715	4.37926183575123	3.85912150410099	3.91980011604837	4.4058772920606	-0.121938301424724	0.822275866833288	0.958041123079214
Merged-chr4-83309082-4	chr4	83308585	83309585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027238, intron 1 of 19)	MTC|LTR|ERVL-MaLR	15104.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	6.87276103183111	7.18458292258204	6.81904065165895	6.80765978222858	7.00750811133403	6.68482426783134	-0.194832267087297	0.470369325954943	0.819495618343931
Merged-chr6-54954425-3	chr6	54953937	54954937	+	902.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172729, intron 1 of 11)	RLTR11A2|LTR|ERVK	17224.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	4.89606589885349	4.7499708655592	5.17622382126056	6.17268385702681	6.48886886600888	6.79715000628136	2.9199402070016	6.63433936200009e-16	2.17334688832009e-13
Merged-chr4-132808285-4	chr4	132807804	132808804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11940.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.86343992290291	6.57585123979599	6.52845929265352	6.8766169080292	7.17922116518331	6.98133341986729	0.545360085732038	0.0423493880379909	0.257887167759476
Merged-chr12-73842622-2	chr12	73842122	73843122	+	550.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58702.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	2.40379622762529	2.36961142295988	2.32590902811213	2.68322604040179	2.32965591936687	2.66245179182869	1.20022912425305	0.154709501489488	1
Merged-chr3-137941872-3	chr3	137941371	137942371	+	878.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23316.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	5.04404562298049	4.69303256087146	4.20252725627495	4.66773180739003	4.33362421069902	4.47162563577433	-0.487965036409593	0.322964265254215	0.716370607076819
Merged-chr2-52944881-2	chr2	52944381	52945381	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87013.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.459072637146	5.4959556626821	5.36560954443618	5.26485019119918	5.26922466459524	5.09482910248607	-0.447903506288122	0.191932594979635	0.578865756753253
Merged-chr3-94975222-4	chr3	94974727	94975727	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001293716, intron 1 of 9)	intron (NM_001293716, intron 1 of 9)	496.0	NM_001293716	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	7.09390646042236	7.23938138571405	7.30527150655016	7.39742278182968	7.20088676601443	7.11173420810689	0.0492404375192976	0.839175439810912	0.962725890398731
Merged-chr15-8995001-5	chr15	8994442	8995442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	26993.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	6.08984950930684	6.29447100059861	6.32689318821546	6.22718819804548	5.9957824082112	6.07919596734315	-0.229395498613664	0.427970996059862	0.79478410196054
Merged-chr18-70437222-2	chr18	70436689	70437689	+	857.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35265.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	5.64015606916444	5.93468744476822	5.68899258651204	6.203571506328	6.32625712590881	5.98484656566908	0.731478798120686	0.018684673080615	0.154610868116243
Merged-chr12-110889196-4	chr12	110888704	110889704	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	-59.0	NM_026048	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	8.95514386522328	8.8509259073739	8.44131060932688	8.69434672256331	8.77258842163837	8.15730345152959	-0.270173491959668	0.311392154516465	0.706465219571547
Merged-chr13-113580079-4	chr13	113579582	113580582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	38482.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.53111931878704	4.59145305189301	4.57126328666007	4.49160236838719	4.38161554334753	4.42682980752938	-0.331866492809187	0.432701215990881	0.797470602909747
Merged-chr4-147125070-4	chr4	147124571	147125571	+	995.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-50795.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	4.48117290007888	4.31726862286737	4.51173741099848	4.36162783070066	3.91456183264202	4.13826253022172	-0.781895649813813	0.104552233428971	0.431512826954913
Merged-chr18-49979900-1	chr18	49979400	49980400	+	1000.0	f1_balb.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	473.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	5.33675966429693	5.27247201275798	5.41117598749996	5.04343730260501	5.07671294022121	5.06263062068627	-0.56722473228249	0.106425896507988	0.435565687700392
Merged-chr5-130257910-2	chr5	130257410	130258410	+	810.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_153350, intron 1 of 15)	intron (NR_153350, intron 1 of 15)	873.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	3.07133601529721	2.96107533403568	3.1893081262977	3.37046719735747	3.19402581527911	3.31769798941007	0.952116326190588	0.139331714733715	0.498774450161891
Merged-chr2-52906677-4	chr2	52906207	52907207	+	752.537476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	48839.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.9953676741482	4.90659439645181	4.80570153938777	5.0638835803657	5.25721728453381	4.61466846877087	0.24388042831865	0.558494606413676	0.864722646301276
Merged-chr16-5254497-4	chr16	5253986	5254986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	1470.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	5.67338845356575	6.03125178573331	5.69445833406155	5.73585983905532	5.88631811989501	5.78332108168835	-0.0206275889526899	0.948648854187562	0.988151190239158
Merged-chr8-84914103-2	chr8	84913603	84914603	+	839.666626	f1_balb.idr|f1_c57bl6.idr	intron (NR_103491, intron 1 of 2)	B3|SINE|B2	768.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	4.66013187981228	4.42483724114059	4.23805406438858	3.96477102057824	3.80504483663864	4.01303450348046	-1.52833369707717	0.00199164444523005	0.030889235973663
Merged-chr2-45198116-2	chr2	45197616	45198616	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80674.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.84959777519256	8.04783643331276	7.83905469560118	8.1023991326865	8.22885426058923	7.98232701841386	0.276290633891029	0.211100883072608	0.603477171445767
Merged-chr1-7087273-2	chr1	7086773	7087773	+	711.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1647.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	2.79417647361217	2.84185347426805	2.92462540370072	2.69731668323392	3.09250437310508	2.81394299685969	0.164450180589397	0.823585327188248	0.958451715155168
Merged-chr8-14642639-4	chr8	14642141	14643141	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-245895.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.09517554489055	3.90835432126796	3.61980704426761	4.27170694582444	3.9171283076663	4.07209401563067	0.577622669083667	0.289685008041748	0.687412238674968
Merged-chr7-123430001-4	chr7	123429498	123430498	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	22181.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	4.94159431009037	5.23691465528826	5.31615666052363	5.05186761640711	5.08770408570464	5.12796112225842	-0.167118608360673	0.651789706114462	0.902896807825606
Merged-chr17-8283072-4	chr17	8282628	8283628	+	932.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-685.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	7.09907945592256	7.32344607845751	7.10818679664188	7.2799738862003	7.33430300348928	6.82082382638135	-0.0119304618260793	0.964474992854099	0.991478598183903
Merged-chr5-122699629-2	chr5	122699129	122700129	+	766.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7915.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	5.83765869485668	5.724726175546	5.16288698568807	4.95387203329282	4.58131749129025	4.84495528654235	-1.69784405813638	2.73211736245591e-05	0.000952383835338214
Merged-chr11-3331272-2	chr11	3330772	3331772	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178149, intron 1 of 5)	intron (NM_178149, intron 1 of 5)	541.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	3.23559969296659	3.20533230153779	3.14304676237446	3.30640571092319	3.08955872868451	3.21545396241191	0.0266004843466332	0.966496716290292	0.992315915860502
Merged-chr2-94405640-4	chr2	94405139	94406139	+	938.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183106, intron 1 of 24)	(CA)n|Simple_repeat|Simple_repeat	1050.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	6.55426391877605	6.53372144725896	6.08449127758588	6.69342685350349	6.65224749289253	6.36650357792706	0.263827523483088	0.373207342071658	0.757078270980998
Merged-chr7-83814312-4	chr7	83813809	83814809	+	954.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19470.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	4.42470546831962	4.41070341353357	4.34924893921227	4.57461034930198	4.4126868425522	4.32578911016785	0.119886672548473	0.784149680155791	0.947483831703111
Merged-chr2-27753494-3	chr2	27753055	27754055	+	693.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290481, intron 6 of 9)	intron (NM_001290481, intron 6 of 9)	42972.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.15692221861774	4.38663957095746	4.89232870025186	4.29972439854518	3.98596056981715	4.9243838883158	-0.122354707081637	0.827290568811062	0.959416767475935
Merged-chr12-32893440-4	chr12	32892934	32893934	+	928.30835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	60355.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	5.15519023566186	5.33084547015775	5.62835116700279	5.85045056494131	5.93740477258715	6.10520451122694	1.09328855261938	0.00111404314433242	0.0195729100408808
Merged-chr13-51651740-4	chr13	51651242	51652242	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029279)	promoter-TSS (NM_029279)	34.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	7.5990132630238	7.88359973133107	7.7624757456988	7.83188374272351	7.79251679137675	7.75010410558523	0.055416737359477	0.803917783598493	0.953557286986578
Merged-chr4-134765249-4	chr4	134764742	134765742	+	972.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	B1_Mus2|SINE|Alu	2762.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	6.47623212778048	6.78911442764554	6.90468106897786	6.67926537046816	7.02638285932499	6.83513953861143	0.202541499173464	0.466241860550147	0.81746075967501
Merged-chr18-7870798-3	chr18	7870321	7871321	+	813.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360956, intron 2 of 13)	PB1D7|SINE|Alu	1108.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	5.00511487223971	5.08881677431638	4.83871318170984	4.79630184481799	5.10836401598825	4.74370900033913	-0.177024777554211	0.657297161617178	0.904798742244684
Merged-chr13-13666347-4	chr13	13665823	13666823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010748, intron 18 of 52)	intron (NM_010748, intron 18 of 52)	75914.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.45503931227016	3.59729734439716	3.63425968714142	3.52709228788104	3.30163746622532	3.75309731989413	-0.113273457253528	0.848581342126393	0.964356989789491
Merged-chr10-93279294-2	chr10	93278795	93279795	+	648.166626	f0_balb.idr|f1_balb.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	31864.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	2.68574332009521	2.67570326758476	2.81386134615043	2.72877012460789	2.50356464890739	2.94446297176366	0.0413676639851725	0.957041240535919	0.989887454023164
Merged-chr2-29646828-2	chr2	29646328	29647328	+	757.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	27108.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	2.97972787775646	3.05626722759583	3.24162062966837	2.93724751478349	3.06871446476886	3.36451727957883	0.162209064030229	0.81120037335357	0.955145794362684
Merged-chr11-89023605-3	chr11	89023103	89024103	+	991.611145	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	24200.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	7.66003273706253	7.65373723105919	7.59882175071793	8.00178114074914	8.21130889009579	7.8014521400162	0.550354355207799	0.0169116525995034	0.144356256616688
Merged-chr19-3324138-4	chr19	3323631	3324631	+	978.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013495, intron 1 of 18)	CpG	830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	7.54608295690443	8.10718024767059	7.67922445421078	7.46462168855904	7.90933934329544	7.81367299691474	-0.086794352935135	0.749905235788282	0.937463855381525
Merged-chr17-47595229-2	chr17	47594729	47595729	+	660.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	1762.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.07073732236704	2.95623077171067	3.46622919808001	2.80952687535677	2.77873285390837	3.00435990216064	-1.46822888181866	0.0448540813339341	0.26704481966471
Merged-chr10-91083538-1	chr10	91083038	91084038	+	1000.0	f0_balb.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	499.0	NM_026166	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	5.75951168931062	6.06636689514978	5.7277605127243	5.70072510127512	5.8402351764895	5.46943579270651	-0.317062697498374	0.339370574039814	0.7291905794032
Merged-chr6-42266146-4	chr6	42265632	42266632	+	873.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	1147.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	5.46559384278608	5.4850395927039	5.45843158198405	5.25466634858025	5.4742332635649	5.20504640033695	-0.276497391792813	0.418435560490604	0.788591657834186
Merged-chr12-111037786-7	chr12	111037235	111038235	+	900.464294	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2063.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	6.1741549140344	6.25212266114381	6.10114470408757	6.63213515484472	7.04636883827865	6.59940331337479	0.975557706236701	0.000710937658552503	0.0138246554552084
Merged-chr1-132417454-4	chr1	132416957	132417957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	4.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	6.39080219472606	6.44262014798539	6.09129120880512	6.47820588188078	6.10916617501685	6.49244941564973	0.0599738752493507	0.841532094172171	0.962980526719381
Merged-chr6-114742409-4	chr6	114741908	114742908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253718, intron 18 of 19)	intron (NM_001253718, intron 18 of 19)	99311.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.94118848878901	4.95268023353887	5.38129033228811	4.93530489803853	5.1048850428823	5.24040436582907	0.00146994693635227	0.996985713092394	0.999305189450257
Merged-chr16-32945542-2	chr16	32945042	32946042	+	810.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081255, intron 1 of 20)	intron (NM_001081255, intron 1 of 20)	31442.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	4.60695247304605	4.72277893962869	4.19525717278683	4.44778095035343	4.46038677478193	4.41042792320553	-0.247107135240568	0.58890750388917	0.876650937479947
Merged-chr7-45464289-2	chr7	45463789	45464789	+	888.875	f1_balb.idr|f1_c57bl6.idr	intron (NM_007527, intron 4 of 5)	intron (NM_007527, intron 4 of 5)	2609.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	2.95321451529204	3.19640129255526	3.48953706273361	3.25007340043103	3.04814300865275	3.40624438292948	0.0511235650017886	0.940278187550072	0.986792088790777
Merged-chr11-103217871-4	chr11	103217353	103218353	+	976.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177801, intron 1 of 4)	(CACCG)n|Simple_repeat|Simple_repeat	579.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	3.59965832190968	3.51024178294482	3.45514653062263	3.65146050324585	3.55663017915346	3.35118117632035	0.0188947542432377	0.974158225315944	0.994260005145451
Merged-chr13-43795684-4	chr13	43795210	43796210	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	10598.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	5.02255871773038	5.02784034513988	4.76166222414456	4.85048475799283	4.8587178448487	5.08407679065379	-0.0545065129507899	0.888298217270434	0.97401529899353
Merged-chr8-94192228-1	chr8	94191728	94192728	+	540.0	f1_balb.idr	Intergenic	B2_Mm2|SINE|B2	13139.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	5.74296840915109	6.02241786600199	5.77293789211676	5.77627478631789	6.02518295041098	5.78267340193542	0.031197157057748	0.921273086244815	0.982526400261012
Merged-chr17-26637992-3	chr17	26637468	26638468	+	838.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 7 of 9)	L2b|LINE|L2	-38428.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	4.36742041987595	4.1857738281683	4.43948407549409	3.6329742416743	3.59057941120362	3.82949454281241	-2.04636873689001	0.000116236702010621	0.00321957207355232
Merged-chr8-71469984-2	chr8	71469484	71470484	+	914.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001294259, intron 1 of 3)	intron (NM_001294259, intron 1 of 3)	790.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	5.60090950825369	5.49324470134501	5.50461901453663	5.55184545672332	5.46815548834737	5.25306537527312	-0.184953854573368	0.579836022210531	0.872644657556124
Merged-chr7-80347967-1	chr7	80347467	80348467	+	1000.0	f1_c57bl6.idr	Intergenic	Intergenic	4830.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	2.79199608063244	2.98510819402161	3.17978746593888	2.77899219166572	2.843395544058	2.84997023498071	-0.804651849183698	0.263579207593343	0.661476013554917
Merged-chr7-67222539-4	chr7	67222040	67223040	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175215)	promoter-TSS (NM_175215)	-4.0	NR_131043	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	5.70279272720521	5.53770424962842	5.9066154325269	5.83346488580205	5.83615746742764	5.581395915592	0.090543842787839	0.780548175820107	0.946078518476608
Merged-chr15-102451099-4	chr15	102450595	102451595	+	957.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356575, intron 7 of 11)	intron (NM_001356575, intron 7 of 11)	5728.0	NM_144547	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	4.78436393294968	5.07873403049487	4.34291351613767	4.55050201813646	4.39219792098017	4.15380461123252	-0.963783199822405	0.0486124407069465	0.279830091064933
Merged-chr7-16229966-4	chr7	16229499	16230499	+	888.36908	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7967.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	6.20548519514579	6.28004942063643	6.57342541474325	5.78836921284401	6.30151073465235	5.84825769648504	-0.571474003329036	0.0811099479116726	0.376807355582293
Merged-chr7-66689127-2	chr7	66688627	66689627	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001191001)	promoter-TSS (NM_001191001)	434.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	4.41131599397462	4.26310152276832	4.61892528027726	4.45578228761238	4.03906126468124	4.57013975337101	-0.17476036146464	0.717101866397117	0.926979087819795
Merged-chr17-57276946-4	chr17	57276385	57277385	+	997.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2215.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	6.12795963041211	5.93605724327738	6.05623326816398	5.89988859503785	6.59332000288892	6.00132046103439	0.300688286786181	0.374218716443745	0.757933699438553
Merged-chr6-88075259-4	chr6	88074769	88075769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9204.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	6.3198169408442	6.6185375875017	6.61979996296579	6.76831467614356	6.61736994534049	6.56046090386957	0.207287684958874	0.445357723422401	0.805110311477591
Merged-chr19-5912216-4	chr19	5911786	5912786	+	837.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011262, intron 1 of 10)	CpG	585.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	7.19685072697665	7.22012473313826	7.07662001062727	7.19962498116534	7.46464567008057	7.13446597349771	0.169403665989878	0.490351517596129	0.830042606694236
Merged-chr1-85275502-1	chr1	85275002	85276002	+	654.0	f1_balb.idr	Intergenic	Intergenic	-4936.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.32225690458657	2.44572776373857	2.35914489424749	1.97002527061621	1.90742946857799	2.17058292088721	-3.64781048303539	0.00285438433234577	1
Merged-chr7-97387884-1	chr7	97387384	97388384	+	549.0	f1_c57bl6.idr	intron (NM_199035, intron 9 of 12)	B4A|SINE|B4	-12119.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	2.26556125684746	2.30205272254861	2.14620535338771	2.44939109386376	2.36955866851025	2.49047305310023	1.27558190451409	0.143433855109726	1
Merged-chr8-122567722-4	chr8	122567222	122568222	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026014)	promoter-TSS (NM_026014)	-293.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	7.74511978451137	7.94274182498903	7.94106935706456	7.56293995071798	7.88861323808842	7.96021637573192	-0.0915700093867071	0.698406398356165	0.920332843065367
Merged-chr19-16107890-3	chr19	16107398	16108398	+	761.527771	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24933.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	3.50167643960623	3.71225385982859	3.52494660818377	4.21083605393454	3.78487573577885	4.4841785555088	1.85649037968634	0.00162927228629426	0.0263955243701489
Merged-chr19-3719605-4	chr19	3719162	3720162	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11251.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	4.62941290830879	4.38182794345297	4.29089955371782	4.56309972411332	4.355859319381	4.16307332823694	-0.183693920367953	0.693037217582354	0.918822848593753
Merged-chr8-122548042-4	chr8	122547579	122548579	+	996.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	3250.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	4.38989867703108	4.05133915164847	4.16992121222368	4.30454157096028	4.21122649240902	4.61523527833944	0.438534391915528	0.362138680719005	0.747675323428227
Merged-chr9-58253155-4	chr9	58252653	58253653	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026942)	promoter-TSS (NM_026942)	-11.0	NR_028146	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	6.13627415892014	6.23820855539304	6.48863211744826	6.3618113602248	6.19213685702706	6.16711645606032	-0.0702406580188087	0.807548356479725	0.954557080558103
Merged-chr8-70592896-2	chr8	70592388	70593388	+	740.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_007924)	TTS (NM_007924)	-1593.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	2.41995219086187	2.28514185281719	2.4872697496811	2.26184480569065	2.12128569046355	2.09769237219304	-1.69702611185241	0.0661365063682988	1
Merged-chr4-102579894-2	chr4	102579439	102580439	+	640.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-7619.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.26615467122604	4.92445953175159	4.55197670312197	4.82058729240072	4.56385020320931	4.85367385454087	0.303224625499969	0.512327059095954	0.841860053306022
Merged-chr19-5878159-2	chr19	5877659	5878659	+	1000.0	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_134154, exon 1 of 6)	5' UTR (NM_134154, exon 1 of 6)	337.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	7.05657362649563	7.07913328944772	6.8851670489441	7.13493787342704	7.29070423739729	7.22105732984715	0.306125493118843	0.201914591224635	0.591539655891113
Merged-chr13-37918778-2	chr13	37918278	37919278	+	940.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_033615, intron 8 of 9)	intron (NR_033615, intron 8 of 9)	29907.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.44310959020044	2.5666150516529	2.63231589156147	2.35259588730156	2.36777179629121	2.70512488503295	-0.404093577563753	0.623088972350367	1
Merged-chr10-79989119-2	chr10	79988619	79989619	+	781.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007725, intron 1 of 6)	intron (NM_007725, intron 1 of 6)	519.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	4.13594965825344	4.01369964713847	3.69090328257791	3.69436930584099	3.70579878726065	3.76287910119087	-0.79451117944261	0.142168266196284	0.503363137469059
Merged-chr10-79927423-4	chr10	79927002	79928002	+	933.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001288625, intron 1 of 8)	CpG	161.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	6.63798384468332	6.83612035918094	7.10136591198348	6.99593628552052	7.33602587201713	7.12217555707622	0.45736041131935	0.0906667646224195	0.400621283981532
Merged-chr18-82774517-3	chr18	82774033	82775033	+	828.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15494.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	1.86563228886322	1.90606253054871	2.12805554170051	1.79941367952045	1.70490017330507	1.80265742651178	-1.87315349596654	0.076519596712388	1
Merged-chr12-79797236-4	chr12	79796729	79797729	+	783.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009014, intron 9 of 10)	intron (NM_009014, intron 9 of 10)	127504.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	3.0997921555192	2.98883422052897	3.28290622387464	3.0223075573351	2.98477209594936	3.18999879719554	-0.265638198473197	0.689263635990864	0.917319650405699
Merged-chr11-31847845-1	chr11	31847345	31848345	+	544.0	f0_c57.idr	Intergenic	MER2|DNA|TcMar-Tigger	-23095.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	2.45086629916962	2.04540950439026	2.36623130411277	2.37084508065224	2.29703442010864	2.56735738253845	0.7280460046996	0.438229527929343	1
Merged-chr2-144300286-4	chr2	144299799	144300799	+	826.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC5|LINE|L1	29395.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	5.97012280413308	5.79525424540886	6.24855675276622	5.80218331040065	6.06063015545655	6.06615567436926	-0.0426334117784179	0.892648140179162	0.975146620821922
Merged-chr5-64202882-3	chr5	64202382	64203382	+	938.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019636, intron 2 of 19)	L1MB8|LINE|L1	-27475.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.90744319986125	4.91948100212224	5.37131688398823	5.21327010003204	4.82239865862672	4.92237442003581	-0.16320730346093	0.688253361176273	0.917193226920892
Merged-chr12-73611009-4	chr12	73610493	73611493	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	26197.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.42967065034944	5.11881873808673	5.19480213783916	4.72687024308366	4.62127497793796	4.67017331967686	-1.28510436885646	0.000931036301786052	0.017026300790992
Merged-chr8-3221882-4	chr8	3221378	3222378	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	57739.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	5.10867330003842	5.09217138461149	5.18783925439857	5.23702155846685	5.20275295173932	5.54294617292361	0.403707082899734	0.260444466335818	0.657815175900642
Merged-chr7-132308514-3	chr7	132308016	132309016	+	724.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 1 of 7)	URR1A|DNA|hAT-Charlie	-7148.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	3.37605040623032	3.17467520424163	3.26271712484797	3.42401601020943	3.21896892140433	3.65353938885269	0.628623907890559	0.317898075819088	0.711697556777644
Merged-chr15-8446062-4	chr15	8445565	8446565	+	876.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1602.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	7.16738855611624	7.28402297058454	7.03186010500903	7.35810719229415	7.70689133366216	7.11707307950709	0.384123221566043	0.153894444652797	0.523047502273913
Merged-chr18-60500096-4	chr18	60499593	60500593	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	1890.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	5.96533153059224	6.09938803703661	6.15115329566456	4.730552334013	4.94638638536305	5.00872111228241	-2.28509718003511	1.04032276925119e-10	1.38945709444387e-08
Merged-chr10-23176740-2	chr10	23176236	23177236	+	845.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	173154.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	4.08293278484384	4.02583900920454	4.23967961241392	4.03164167144382	4.18762433167248	3.81825514521594	-0.233783266752576	0.643829864768932	0.899990653857957
Merged-chr5-142912987-4	chr5	142912454	142913454	+	734.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6200.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	3.73501576732188	3.5703967564708	3.63042355896862	3.66154579855716	3.77515425078204	3.70084945331901	0.231871726897793	0.66916651806347	0.909551393159174
Merged-chr1-105664563-2	chr1	105664079	105665079	+	820.0	f0_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013784)	promoter-TSS (NM_013784)	718.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	6.01391513762102	6.42944661199965	6.63287373452953	6.54346212772678	6.56444083916133	6.34108049423613	0.18890914258841	0.536059607183987	0.853846958834865
Merged-chr13-104285111-4	chr13	104284603	104285603	+	912.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2732.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	3.99702155296864	4.16906465841833	3.86694451867087	4.27968475960598	4.09974608287658	4.0426489920157	0.347589317094011	0.484421496836158	0.826842476948103
Merged-chr18-75502077-2	chr18	75501577	75502577	+	871.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-12568.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	5.21916091511102	5.43124190784569	5.63271079515938	5.41522983560002	5.17096368012897	5.92464536863853	0.187050366508458	0.633400876426597	0.896052571078654
Merged-chr4-9631826-4	chr4	9631318	9632318	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11899.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	7.98795731458902	7.88666646566186	7.50567181939873	8.08464297974009	8.54983906966506	7.83311735784704	0.543580760967518	0.0547415013093372	0.300496822862339
Merged-chr10-127608008-2	chr10	127607508	127608508	+	586.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_008512, exon 4 of 89)	exon (NM_008512, exon 4 of 89)	13140.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.16835700637698	5.50163306391516	6.43518950558817	5.54873481872269	5.19038269376284	5.95653698426497	-0.873314030199722	0.0352661171699932	0.230512417712553
Merged-chr11-87010654-4	chr11	87010167	87011167	+	773.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16905.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	3.36477551811466	3.41133995527706	3.48136735689085	3.26817341465525	3.57596357880652	3.38692435769091	0.0230373801108796	0.969469714392136	0.993164504846051
Merged-chr10-98914415-4	chr10	98913888	98914888	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-254.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.85762566946695	8.77282469092806	8.37110608774249	8.38417256766232	8.56201182209905	8.20069800507742	-0.406882262030624	0.0912949647515656	0.402116270417692
Merged-chr8-123043490-4	chr8	123043002	123044002	+	961.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	927.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	8.14806314458555	8.40324649621899	7.50387934360509	7.76338300378476	8.29792622160793	7.89240541563328	-0.0986594922472347	0.747556941566966	0.936653971666454
Merged-chr3-8998968-1	chr3	8998468	8999468	+	553.0	f1_balb.idr	intron (NM_009412, intron 1 of 5)	B1_Mur4|SINE|Alu	5236.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.37075228217563	5.42201960155342	5.45120991576028	5.22098685441469	5.10953450149672	5.36770636377925	-0.371976106374773	0.279447838648073	0.677139571863736
Merged-chr3-63963892-3	chr3	63963390	63964390	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_015728, exon 1 of 6)	exon (NM_015728, exon 1 of 6)	843.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	6.9514436917698	7.0448264477217	7.10877367497854	7.05599726760505	6.83626624557937	6.95749221669506	-0.127696212870362	0.602538010385852	0.882349532183277
Merged-chr11-45851944-4	chr11	45851483	45852483	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346760)	promoter-TSS (NM_001346760)	19.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	7.91757493487638	7.72679662223233	7.90088443334095	8.19233323281205	7.50260195487407	7.88686276641793	0.0578357133745471	0.827824741304074	0.959553526508006
Merged-chr1-37605879-4	chr1	37605374	37606374	+	980.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	-64858.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	3.44221548751589	3.44077341853352	3.70084962180474	3.5439058406007	3.60927362850674	3.66964348922114	0.291149257738068	0.607745486732757	0.884709874063631
Merged-chr19-10693174-4	chr19	10692672	10693672	+	926.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	4437.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	5.69843154171913	5.45035371864087	5.82034305954417	5.70552175258812	5.97323099533007	5.53246579875223	0.193277571588047	0.569510913671216	0.8688875602138
Merged-chr11-110993802-4	chr11	110993312	110994312	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-3675.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	7.17018021616588	7.16272223015113	6.88526468214673	7.04370331306849	7.48257216421078	7.41496056998757	0.363930629697251	0.166842591930706	0.54240433228749
Merged-chr18-65681900-2	chr18	65681420	65682420	+	654.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-16348.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	4.87375942569234	4.92269984223221	4.90842549705806	4.86037626158001	4.74130680563073	4.8634418536761	-0.187416695512421	0.62412346218638	0.891828494128631
Merged-chr1-172349843-1	chr1	172349343	172350343	+	1000.0	f1_c57bl6.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	8633.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	3.80642905474571	3.60006918252835	3.55744120947199	3.47588097826035	3.42931364477506	3.62825943680907	-0.553703207680372	0.331734518981125	0.723007120733968
Merged-chr19-8800168-1	chr19	8799668	8800668	+	543.0	f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-1611.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	2.52107685777665	2.25041527285214	2.65603490251902	2.63555976710793	2.69278679108318	2.90727340694848	1.52243893746885	0.0802299797684046	0.374769895950677
Merged-chr8-41371023-3	chr8	41370546	41371546	+	617.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	3651.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	4.76418923660119	4.37921629305492	4.60244316803483	5.20065016614805	5.27287202569595	5.12635694421398	1.35918316181638	0.000689688366489604	0.0135220522146246
Merged-chr11-115705274-2	chr11	115704777	115705777	+	859.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	3320.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.74606630151576	4.99595536297446	4.86035606983117	4.95352558018584	5.31003926906169	5.32220730277018	0.716059601558869	0.0645887030661324	0.331208118014144
Merged-chr10-67024917-2	chr10	67024417	67025417	+	882.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_110511, intron 2 of 6)	B3|SINE|B2	19842.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	4.4456406853228	4.33798866466621	4.19370610694445	4.19938022634458	4.49799131776508	4.26293945169226	-0.000765970404954595	0.99868201106795	0.999767255399497
Merged-chr7-143039916-2	chr7	143039422	143040422	+	739.666687	f1_balb.idr|f1_c57bl6.idr	intron (NR_110355, intron 2 of 4)	MLT2B3|LTR|ERVL	-12828.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	4.72263854725545	4.6866827319193	4.62655457538481	4.51443151580384	4.30790315747456	4.65305850129932	-0.475114137637063	0.26393652912668	0.661879105198449
Merged-chr1-161492253-3	chr1	161491747	161492747	+	991.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2410.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.46724807061453	4.34106259847835	4.06861113585276	4.16162423650534	4.14939006552408	4.08825826088774	-0.48441016744708	0.310619785377919	0.705983367979402
Merged-chr5-144014901-4	chr5	144014401	144015401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-48.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	6.61358468812881	6.61916239762703	6.63494451665429	6.65997524013527	6.73943215075152	6.95867626364025	0.257470378859751	0.318735857244343	0.712710233515729
Merged-chr2-132285016-4	chr2	132284425	132285425	+	853.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-1014.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	4.66497023939775	4.55315864434026	4.86191482728751	4.50519366804446	4.44293781807354	4.9892258999704	-0.0869456961035374	0.845537343757216	0.963834884892227
Merged-chr3-89385244-3	chr3	89384742	89385742	+	862.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	2429.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	3.72350144888883	3.76668020652866	4.15969945942412	3.91784587239535	3.96802701914753	4.1400872125884	0.367604550691941	0.485238763831134	0.827394620754206
Merged-chr11-55459548-2	chr11	55459048	55460048	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1660.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	4.93102467049086	4.59670415295383	4.98518273323879	4.70613656465633	4.93277327699262	4.75833527075448	-0.073854697471263	0.857222716477173	0.96672387667393
Merged-chr8-83997820-4	chr8	83997265	83998265	+	872.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	93.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	4.80169121319002	4.46443741248129	4.88229611967392	4.85108847243452	4.46730135133172	5.07857663173159	0.204714270242765	0.648012323956555	0.901652424952963
Merged-chr1-157448738-2	chr1	157448292	157449292	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9776.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	4.11688154606154	4.16160067761472	4.24196327199519	3.64454583810839	3.73190765776598	3.78890946218165	-1.40530438674173	0.006430106691248	0.0735117249770661
Merged-chr2-32607425-4	chr2	32606927	32607927	+	837.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	442.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	7.25699706340045	6.92112048137779	6.96065348144893	7.55127171597104	7.20968951622866	7.28663540633502	0.44596509179304	0.0859352858373644	0.388215443244267
Merged-chr7-16248899-1	chr7	16248399	16249399	+	1000.0	f1_balb.idr	exon (NM_007577, exon 3 of 3)	exon (NM_007577, exon 3 of 3)	-4745.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	3.04086590404871	2.92919268405976	3.4376910267128	2.88058768490265	3.17784335432647	3.13638988203808	-0.325678478039967	0.646378817161275	0.90099114147517
Merged-chr5-103721678-4	chr5	103721156	103722156	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32506.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.13478618429924	6.52160069235885	6.25179689077096	6.85501040054283	6.93324201089637	6.9349110103639	0.93408680765658	0.000654983313068713	0.01300402088137
Merged-chr14-79483154-2	chr14	79482654	79483654	+	759.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007920, intron 1 of 8)	B1F|SINE|Alu	-1886.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	5.89726801989765	6.35932361370831	6.04305295377278	5.5483408013074	5.81049304370148	5.36729419044676	-0.91416854859194	0.00809322190605315	0.0867922165689999
Merged-chr12-54863295-1	chr12	54862795	54863795	+	593.0	f1_balb.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-418.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	5.69457728256902	5.33891148972721	5.30553460656657	5.81681746897395	5.39542565988629	5.12227371676485	0.037600650478866	0.922709911583373	0.982621045978137
Merged-chr19-45631186-2	chr19	45630698	45631698	+	699.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_013907, intron 4 of 8)	intron (NM_013907, intron 4 of 8)	28995.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	3.81957524241157	3.57810627649399	3.55625181936014	3.83837117453957	3.65887292635816	3.93812829712666	0.490653780055771	0.375894541309466	0.758951282467405
Merged-chr3-87376335-4	chr3	87375843	87376843	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-44.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	5.823498435162	5.74932854919289	5.6482878282657	6.80357642238775	6.97182232914221	6.66776073600924	1.78505460247194	4.19058901124321e-10	4.8836208746152e-08
Merged-chr13-111793702-2	chr13	111793202	111794202	+	905.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	15291.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	3.04593336732642	2.99496455585624	3.11583024525997	3.05364573790758	2.98406008762989	2.95013495239919	-0.243214572916857	0.714180002535709	0.925756575982089
Merged-chr1-180771491-4	chr1	180770996	180771996	+	872.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	42109.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	4.91083560595719	4.86517744881583	5.31637378570608	5.33125567152221	5.2111146273186	5.43617314060458	0.600525854231616	0.111175002008702	0.445419833321467
Merged-chr4-132802420-4	chr4	132801938	132802938	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6074.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.92077197994485	6.82410543963133	6.86961800940916	6.92679574125624	7.24276015686362	6.92797642859201	0.273311739069918	0.283539172821757	0.681376161050487
Merged-chr15-64072060-3	chr15	64071572	64072572	+	872.694458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11624.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.3825312681324	3.01487951801332	3.24963033167322	2.94232096830089	2.75190826009114	2.97124748607855	-1.60260803786086	0.025425281123007	0.189009808959454
Merged-chr1-118459112-4	chr1	118458617	118459617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_027901, exon 1 of 1)	non-coding (NR_027901, exon 1 of 1)	148.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	6.93779643602831	7.36490223627143	6.4713961459775	7.1099758301531	6.93344026777766	6.49175265487486	-0.168613291364206	0.618629198051374	0.889497316944952
Merged-chr12-80213467-4	chr12	80212973	80213973	+	908.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134156, intron 1 of 20)	MIR3|SINE|MIR	46898.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	5.04147105150929	4.81398627194684	4.74178012487367	5.20173337470508	5.0219464158852	5.00222035615708	0.430892730725817	0.263215961462299	0.661238149505653
Merged-chr3-32529427-4	chr3	32528943	32529943	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024200)	promoter-TSS (NM_024200)	-39.0	NM_024200	67414.0	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	5.16783817841524	5.34078153609314	5.36848065877413	5.40785443973731	5.13325544199889	4.91609919114575	-0.236946581313349	0.525531678275943	0.849027787811941
Merged-chr12-91584879-2	chr12	91584379	91585379	+	789.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4770.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	3.77662297834065	3.85763554851539	3.87252708105741	4.01200312739375	3.92631189256767	4.17552435110985	0.611973405571213	0.225810591790687	0.620701256044383
Merged-chr11-115049450-4	chr11	115048958	115049958	+	879.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1163.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	5.37616244609141	5.45052934190113	5.3133997274224	4.92880540347701	5.22411692731147	5.07788093692801	-0.59660479009941	0.0967039762829382	0.414629899193181
Merged-chr10-88794904-3	chr10	88794405	88795405	+	979.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175158, intron 22 of 61)	intron (NM_175158, intron 22 of 61)	31909.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	4.55697687144791	4.62126977874037	4.90740987890598	4.20945560242176	4.33615646476596	4.83751908950727	-0.530584945242949	0.258728311335993	0.656251800083823
Merged-chr6-86849018-1	chr6	86848518	86849518	+	1000.0	f0_c57.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	422.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	7.91896518540144	8.20777187621992	7.8163866298499	7.99186312603091	8.09604601780575	7.75042405461196	-0.0535949414713969	0.82420803789306	0.958523256704056
Merged-chr9-70731271-4	chr9	70730758	70731758	+	897.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007399, intron 4 of 15)	L2|LINE|L2	52276.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.46950377072306	4.26862379191037	4.37986475839094	4.26904639103029	4.33322816898741	4.26859875545267	-0.215223993202158	0.630807299247737	0.894912420650784
Merged-chr10-77314901-4	chr10	77314405	77315405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024838, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	55605.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	6.40717640246539	5.99465166445171	5.8442189634532	6.15949027778901	6.09922434382499	5.52416986957572	-0.245362393074413	0.493342612301963	0.831208279358962
Merged-chr3-69126549-4	chr3	69126077	69127077	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008467, intron 1 of 16)	CpG	515.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	8.35723741389018	8.53847355614674	8.09778698933861	8.32099208720349	8.18461373968385	8.16754152623929	-0.172770703170247	0.447211183381191	0.806316645191341
Merged-chr9-13701949-4	chr9	13701445	13702445	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173776, intron 2 of 3)	intron (NM_173776, intron 2 of 3)	39485.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.50727492645669	5.48307400043843	5.73616274659766	5.46139872138441	5.44033448469941	5.25345053961995	-0.337574927445755	0.316849125419493	0.7107835120216
Merged-chr9-41136708-4	chr9	41136191	41137191	+	985.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	21371.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	7.01768370000687	6.67468203800059	6.8008246007632	6.41338303109529	6.03245967065577	6.35339838021407	-0.917896224632198	0.00137729641721929	0.0231519354109056
Merged-chr2-152471163-2	chr2	152470663	152471663	+	837.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR18-int|LTR|ERVK	-5900.0	NM_176950	319579.0	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	4.11970743513956	4.16430606297124	4.12854073230656	4.30604883827665	4.28954085613078	3.94343633365768	0.171889427140522	0.722313276939929	0.92872455507539
Merged-chr11-87026709-4	chr11	87026223	87027223	+	993.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-32961.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	7.04013393682183	7.1402217536888	7.1511073454472	7.01556258482556	7.09214215271582	7.22043481366934	-0.00241136543445903	0.991922640283043	0.998351393644539
Merged-chr2-30128995-4	chr2	30128488	30129488	+	961.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-4377.0	NM_001290503	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	3.35978464563782	3.0456150329179	3.40969783175245	3.38787289013806	3.12686054272573	3.19986637108823	-0.145611359719052	0.823070530326331	0.958214218900685
Merged-chr7-101902900-2	chr7	101902400	101903400	+	645.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081679, intron 1 of 3)	B3|SINE|B2	885.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	3.28002910383447	3.22720448639053	3.5090690781663	3.32751594738372	3.42110042440065	3.52707133894176	0.341340707189591	0.572225757880725	0.869807909725036
Merged-chr15-25364250-7	chr15	25363743	25364743	+	879.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027395, exon 2 of 2)	exon (NM_027395, exon 2 of 2)	49521.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.36563586754476	5.66446232919027	5.72018609102919	6.02066518818071	5.38546934661125	5.64351351545718	-0.454086077854639	0.243560620280888	0.640776628186919
Merged-chr17-86973067-6	chr17	86972608	86973608	+	982.4074099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9997.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	6.28458591323897	6.14444026632798	5.73366960922837	6.52914849889111	6.18560096001793	6.19458912152573	0.378624598497565	0.23797841915335	0.634568444188813
Merged-chr19-17244391-2	chr19	17243876	17244876	+	932.375	f0_balb.idr|f1_balb.idr	Intergenic	RLTR11A|LTR|ERVK	95129.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	4.02447267598202	4.15213107684538	3.90279493657331	3.1633283245457	3.03246926627169	3.55624719773087	-3.18308050620402	7.86056664069364e-06	0.0003244355302772
Merged-chr18-56926325-2	chr18	56925825	56926825	+	697.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-777.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	4.01989501198923	3.98054041050748	3.94410854220584	4.07725852385399	3.61124368214723	3.75367185230599	-0.48100524808502	0.370903629281577	0.755116600398165
Merged-chr3-51342686-4	chr3	51342154	51343154	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2010.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	5.22586982572789	4.8701971803721	5.07189925724332	5.05132188803849	5.20495440877583	5.0670614007025	0.106568507612088	0.776681548151875	0.944890351789015
Merged-chr1-51493731-1	chr1	51493231	51494231	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-15332.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.79834907368421	5.86812729745233	5.8102386804402	5.84336326114487	6.1268551459961	6.14585222433612	0.382992283608039	0.20509883496903	0.595694220420628
Merged-chr2-181598984-4	chr2	181598527	181599527	+	959.9249880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_172676, exon 1 of 5)	5' UTR (NM_172676, exon 1 of 5)	120.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	4.25692570998873	4.27780233716356	4.56987322379887	4.15376684903034	3.70231685097356	3.6483856595733	-1.48326269381829	0.00711906841270447	0.0791189320801808
Merged-chr13-98810383-4	chr13	98809885	98810885	+	973.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	5064.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	5.86291500953119	6.13483870503591	6.11613191981892	6.35119651812775	6.54048006106692	6.41593817147507	0.669695871845025	0.0191022474711108	0.156720548962353
Merged-chr7-102023218-2	chr7	102022718	102023718	+	969.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_029211, intron 8 of 8)	intron (NM_029211, intron 8 of 8)	-5063.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	5.92556548993543	5.66199944946094	6.00893888545209	5.59557789099552	5.72472143528227	5.68539222936876	-0.352748207087317	0.26778774522806	0.664975925109882
Merged-chr9-104629980-3	chr9	104629478	104630478	+	938.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	60495.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	6.39105048812864	6.63170622156814	6.49420635227513	5.35592996933905	5.10037393799822	5.57660923583752	-2.09596033950284	7.09861149783005e-11	9.74688556949575e-09
Merged-chr15-97830946-3	chr15	97830486	97831486	+	867.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001204276, intron 1 of 25)	CpG	781.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.04818347650081	3.73527947523651	4.12079585013176	3.75969677220465	3.26487680539256	3.35811927171714	-1.69160566326699	0.00702925090867093	0.0783719562654014
Merged-chr7-19228195-4	chr7	19227713	19228713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-176.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	8.82718556546831	8.98143218649935	8.42637800893645	8.53954564666299	8.96528921309099	8.4098965319733	-0.142318316185067	0.589335268589264	0.876842360818516
Merged-chr19-6366887-2	chr19	6366387	6367387	+	586.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360393, intron 2 of 11)	intron (NM_001360393, intron 2 of 11)	3197.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	2.35987416776241	2.45413736372982	2.60363675936158	2.32041543935963	2.22267829121695	2.49337523562934	-0.823899196355248	0.329614769301696	1
Merged-chr11-70376350-4	chr11	70375849	70376849	+	971.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MEf|LINE|L1	-24318.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	5.55178566726279	5.44826768780749	5.755891383569	5.81709993568346	5.89247683412912	5.51553169760238	0.333358233092128	0.314727016179291	0.709062506762149
Merged-chr13-54702850-2	chr13	54702350	54703350	+	666.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033364, intron 1 of 31)	intron (NM_001033364, intron 1 of 31)	1387.0	NM_001033364	268663.0	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	3.03496187531466	3.10937924318357	3.01601558254814	3.09246283115524	2.66520397437937	2.9048665153376	-0.747163041782022	0.305948959168942	0.702020471196356
Merged-chr15-100617441-2	chr15	100616941	100617941	+	695.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011873, intron 2 of 3)	B2_Mm2|SINE|B2	1779.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	4.00660498277153	3.72888811323292	4.12340293596151	3.89128798110514	3.87789580821076	4.47243341443393	0.415811144408561	0.450155206192309	0.808173357988092
Merged-chr2-165856215-4	chr2	165855705	165856705	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1968.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	7.08048800604072	6.74665880108211	6.95361174447337	6.86262184577845	7.25095366553382	7.25964955570878	0.310131875198605	0.248354245239407	0.645478389539464
Merged-chr6-86584435-6	chr6	86583980	86584980	+	974.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-43694.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	7.53165347134163	7.59753960043323	7.57662887036438	7.70899752024569	8.0565450572479	7.52350464958183	0.323890274625742	0.191978075601297	0.578939972261261
Merged-chr11-94994441-3	chr11	94993938	94994938	+	632.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3226.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	4.90410119373023	5.07932039379806	5.11453091821661	4.77101344469473	5.06217609257003	4.97397086624769	-0.186161488388792	0.627021515032296	0.892988961867358
Merged-chr11-63051274-4	chr11	63050793	63051793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10366.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	6.53891644278575	6.48816183079653	6.53860581386769	6.76620628095479	6.93792715069848	6.79327750467968	0.502110055009325	0.0479414996363148	0.277580982655242
Merged-chr19-5573874-2	chr19	5573374	5574374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	5850.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	4.31145645312309	4.51399508608927	4.56106093152382	4.25785451477443	4.35263437751949	4.192443904437	-0.487987924714989	0.28013070060794	0.677905867152904
Merged-chr2-112263130-2	chr2	112262630	112263630	+	545.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_025403)	TTS (NM_025403)	1204.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	4.47998519888174	4.30674495799578	4.59334047947495	5.10871897574417	4.86275466465534	4.6189802131107	1.00853643965109	0.0189066361596021	0.155575888208877
Merged-chr1-154097868-4	chr1	154097370	154098370	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MB3|LINE|L1	-103317.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	6.22537680912395	6.37806215960088	6.36925867229462	6.26345578548185	6.31878930753915	6.56858171238698	0.0953221037716308	0.732718588444936	0.931858722659821
Merged-chr5-92309764-7	chr5	92309229	92310229	+	981.4285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172713, intron 1 of 21)	CpG	295.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	7.00945007274288	7.14288385570241	6.80779888555131	6.84775513029415	6.96207573162353	6.19642009159505	-0.42069934412393	0.179145656706687	0.560599917384355
Merged-chr2-117914101-4	chr2	117913608	117914608	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	92180.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	3.24610544483616	3.28984360828169	3.42494731367454	3.20038839677282	3.14673758002325	2.9703437531972	-0.862118606897572	0.187660484329198	0.572853972414112
Merged-chr7-127971180-2	chr7	127970680	127971680	+	707.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347649, intron 3 of 14)	intron (NM_001347649, intron 3 of 14)	3701.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	2.86403192025175	2.96858067882408	3.11507971581139	2.76773311643747	2.93012393720544	3.07447419383193	-0.261810837724125	0.70914713808227	0.923909555179111
Merged-chr11-69430909-2	chr11	69430409	69431409	+	902.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081330, intron 74 of 85)	intron (NM_001081330, intron 74 of 85)	-17234.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	2.37804713313407	2.44483111692219	2.26676433918113	2.51979149743716	2.50545013091193	2.72215668586489	1.33132690520675	0.115493916637973	1
Merged-chr17-29440091-2	chr17	29439591	29440591	+	809.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-50954.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.50450512127012	2.46584330264747	2.42960518529713	2.5414409989227	2.42083277967498	2.63046619287874	0.366543206158268	0.643310050796875	1
Merged-chr11-26452979-5	chr11	26452599	26453599	+	920.857117	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_102382, intron 7 of 11)	MTD|LTR|ERVL-MaLR	66015.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	5.70938296677422	5.92327401292472	5.90760245510856	5.56631407502053	5.92712602703178	5.94540832466526	-0.0419786826132133	0.895819188444471	0.975665889379756
Merged-chr9-70839760-2	chr9	70839260	70840260	+	920.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95048.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.25324471532936	6.39176129543826	6.45459968711871	6.37931383726364	6.52177585534275	6.56567640604141	0.203708998695041	0.450445886594075	0.808381424708846
Merged-chr2-165402932-4	chr2	165402461	165403461	+	634.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2567.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	5.84264978665688	5.91347553627639	6.23497181391782	5.57504771480696	5.21351132634826	5.32244045322218	-1.14852033103197	0.000793081302970373	0.015078317864377
Merged-chr16-57390870-3	chr16	57390365	57391365	+	861.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37588.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.34011673216481	5.06774753102998	5.64013416107569	5.43831741929479	5.53793191147111	5.57121031415116	0.308754123221044	0.391055127948631	0.770112153342334
Merged-chr13-6241201-3	chr13	6240672	6241672	+	807.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-306985.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	3.79921605628507	3.99114994436867	3.72622167331855	3.61587325995651	3.4133225853127	3.46180577764742	-1.21893005770344	0.0318483018968595	0.216399926852351
Merged-chr10-34146188-2	chr10	34145634	34146634	+	720.349976	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-18162.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	3.43154972351858	3.43975695420749	3.32514979800958	3.38732724886462	3.14894616601894	3.39687946313605	-0.366731560724778	0.548845799372222	0.860060665439346
Merged-chr15-86221186-3	chr15	86220732	86221732	+	764.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	6773.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.23244610805301	5.37012803739959	5.57501924275871	5.36240170912852	5.34544355754041	5.25618510939588	-0.128037683357914	0.711815243981291	0.92488881951279
Merged-chr12-52396550-3	chr12	52396046	52397046	+	988.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	84063.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	3.43045304893997	3.26971699751978	3.15872655326527	3.11990963221842	3.10328449782672	3.23130446085451	-0.617217561591512	0.333659746045385	0.724517434137507
Merged-chr7-126694006-2	chr7	126693506	126694506	+	561.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029420, intron 1 of 5)	RMER6D|LTR|ERVK	1777.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	3.07206083420523	2.96090986540561	3.28698422779429	3.23269865702111	2.90620236446923	3.13501252242844	-0.0559583350256526	0.934427380958179	0.985707838096286
Merged-chr2-166805503-4	chr2	166804996	166805996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-85.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	7.96801887243727	8.10371336011421	7.69902538945026	7.77213289287329	7.74652163899832	7.43223845178083	-0.394092504852586	0.107801723579414	0.43858624171699
Merged-chr15-53140466-4	chr15	53139952	53140952	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	205731.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.45680780064372	6.23998213788496	6.05275761132387	5.87585101262638	6.00648196837096	5.64293926894697	-0.693745820825961	0.0274419160201798	0.19745446785355
Merged-chr8-110998367-4	chr8	110997856	110998856	+	899.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	-533.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	5.95579832598485	6.55899874333642	6.1174869719168	6.65424588863277	6.8713703199312	6.54089016090054	0.734924766681165	0.0191927204543227	0.15722771318274
Merged-chr6-38900939-4	chr6	38900448	38901448	+	813.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18038.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.46006700508558	7.47963648976652	7.12782681425048	7.44644009209675	7.87012198197493	7.21167261466306	0.261490362083315	0.352227080605763	0.739888459678721
Merged-chr19-41258827-2	chr19	41258327	41259327	+	947.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133352, intron 1 of 14)	B3|SINE|B2	5177.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	2.67700701513719	2.70155239839115	2.64957381661731	2.84142550565078	2.70446256554851	2.96747940522371	0.835436097367885	0.256492453294821	0.653552886970565
Merged-chr15-58108413-2	chr15	58107922	58108922	+	602.166626	f0_c57.idr|f1_c57bl6.idr	exon (NM_027435, exon 16 of 28)	exon (NM_027435, exon 16 of 28)	26660.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	2.57142940271937	2.73039017185616	2.80704495145968	3.00599988161255	2.4998030770881	2.69252901571299	0.23676030915613	0.765378179953178	0.942148336413151
Merged-chr5-140740898-2	chr5	140740398	140741398	+	644.416626	f1_balb.idr|f1_c57bl6.idr	intron (NM_173405, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	16771.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	3.55637023316073	3.6046379169759	3.64348303859552	3.40992021882591	3.29499012461302	3.44761604281152	-0.824755041901656	0.154562975027371	0.523877774629424
Merged-chr17-35148920-2	chr17	35148418	35149418	+	815.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_020027)	TTS (NM_020027)	13204.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	3.12588449710874	2.9408850839135	3.67399698979565	3.32802670993123	2.95374072274658	3.29215267618945	-0.321588411865742	0.657637074340706	0.904859102731141
Merged-chr1-161878166-1	chr1	161877666	161878666	+	569.0	f1_c57bl6.idr	Intergenic	L1MA6|LINE|L1	-1484.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	3.01237853734062	2.70552698773212	2.93209501735945	2.74402767487609	2.71248354712126	2.69615931943726	-0.883783005567326	0.233027623814292	0.629425373444732
Merged-chr5-140615863-4	chr5	140615370	140616370	+	879.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_008494)	TTS (NM_008494)	8529.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.59484211397386	6.34502710267327	6.80972425105627	6.61157831549529	6.45592455202256	6.62526329276386	-0.0406472025471761	0.884864862328892	0.973538624783452
Merged-chr14-73524322-2	chr14	73523822	73524822	+	863.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172527, intron 3 of 4)	intron (NM_172527, intron 3 of 4)	927.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	4.39122935974761	4.10820654644419	4.54461494604604	4.53847293176883	4.05820047060661	4.72142174070692	0.26947543117019	0.591863510707282	0.87780418653262
Merged-chr2-4565114-2	chr2	4564614	4565614	+	881.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177844, intron 1 of 11)	RLTR20B4_MM|LTR|ERVK	5360.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	3.83694037823201	4.12548862152548	4.55545037985282	4.5122896446609	4.25941081224649	4.79813195225379	0.871707647055691	0.0974871093947866	0.41630522958796
Merged-chr1-74369150-2	chr1	74368636	74369636	+	1000.0	f0_balb.idr|f0_c57.idr	3' UTR (NM_001033345, exon 10 of 10)	3' UTR (NM_001033345, exon 10 of 10)	-6067.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	8.29710821524275	8.24387342041795	7.885215571456	8.25762866309282	8.61879342474897	8.26238018375445	0.329112467145191	0.176640751457854	0.557127430636861
Merged-chr14-55094941-4	chr14	55094411	55095411	+	875.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_153083, exon 1 of 2)	5' UTR (NM_153083, exon 1 of 2)	127.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	6.44184884251021	6.69777645952878	6.55850319501682	6.3926488361323	6.49368394612355	6.7443414425512	-0.0439475626119166	0.8734307036971	0.970403508366666
Merged-chr4-133130047-3	chr4	133129494	133130494	+	891.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-639.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	6.39031764421069	6.36292150909427	6.41215227297901	6.59409491126455	6.56803780217144	6.67645495459852	0.360404995190383	0.165329176764091	0.540177882757547
Merged-chr10-51527107-4	chr10	51526646	51527646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MuRRS4-int|LTR|ERV1	36248.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	8.53067199682792	8.86338907531219	8.30336483309721	8.70290319615331	9.02545389756413	8.45059247270689	0.222931574105606	0.397061081647402	0.773969159231945
Merged-chr12-3365215-4	chr12	3364716	3365716	+	963.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008445)	promoter-TSS (NM_008445)	84.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.29210084134856	5.13952426704345	5.370686520351	5.77657377423116	5.45646975569273	5.30779488842763	0.522817368322559	0.141356946957227	0.502119843364898
Merged-chr7-126145538-2	chr7	126145002	126146002	+	755.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 8 of 23)	RMER15|LTR|ERVL	54999.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	4.57342816940943	4.62405575461649	4.97871025523459	4.45582382537714	4.31594902279544	4.91232079114447	-0.369484539771166	0.423255021084093	0.791868419997774
Merged-chr19-6840857-6	chr19	6840461	6841461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019924)	promoter-TSS (NM_019924)	-334.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	6.44028373377237	6.47426969427089	6.48926724552575	6.28890817453363	6.54166481756498	6.08041822144818	-0.21843964193982	0.44782208553764	0.806781204759137
Merged-chr15-6267121-4	chr15	6266640	6267640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32649.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	4.98713675195699	5.07117802942505	4.98616384256926	5.27615886513108	5.24530943314035	5.54573088254134	0.686764452989143	0.0573998726163868	0.309178750083676
Merged-chr2-164803189-2	chr2	164802689	164803689	+	920.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1692.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	4.81494342505957	4.52474987276104	4.58820169576168	4.44850092269921	4.19767479164439	4.57373561960987	-0.614326324200042	0.167810265378126	0.54394844415984
Merged-chr10-128131528-4	chr10	128131012	128132012	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38729.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	5.62770542643453	5.59742967924083	5.4710044094404	5.67977193352173	5.68787033866646	5.78109459396994	0.259711900788748	0.409969734988879	0.78304118380362
Merged-chr10-30755251-4	chr10	30754677	30755677	+	894.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	48149.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	5.39979807579727	5.45580974658963	5.7158093616275	5.25279106826633	4.83289627961286	5.15464112485875	-0.882377400055361	0.0175409665170949	0.147937233119241
Merged-chr1-172335964-4	chr1	172335466	172336466	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5244.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	7.11630536742974	6.81975757199559	6.52737515467108	6.16159013583053	6.2175013868733	6.27686085546496	-1.02120645890146	0.000445622832284519	0.00959363121053822
Merged-chr14-19417463-4	chr14	19416996	19417996	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GSAT_MM|Satellite|Satellite	185091.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	9.0815839988353	10.8767658345563	8.93170074861496	9.9230530300431	9.97505860617109	9.34899271340778	-0.27264960059495	0.748055419292672	0.936880860325556
Merged-chr3-21992337-4	chr3	21991859	21992859	+	888.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-84293.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.98125394680177	6.08715062267854	5.96116112008185	6.12871911240685	6.00714699884208	5.79579377661112	-0.0385499075518419	0.897422493928793	0.976013294529412
Merged-chr6-113669817-7	chr6	113669324	113670324	+	878.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-27226.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	6.94295759212502	6.71962817758207	6.54032774432246	6.55034693759534	6.98437807272301	6.61755898080525	-0.0152076585924434	0.957921271432064	0.990000537228272
Merged-chr13-23731124-1	chr13	23730624	23731624	+	842.0	f1_balb.idr	Intergenic	Intergenic	-7683.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	4.59125854842428	4.21156129947884	4.58218187793912	4.69992566871509	5.05136278436596	5.14473837391315	1.18215969974527	0.00693349560601834	0.0775641707966623
Merged-chr8-70629940-4	chr8	70629441	70630441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001330687, exon 3 of 3)	exon (NM_001330687, exon 3 of 3)	2154.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	7.53200955200955	7.43569410374884	7.29087916355858	7.63871355121841	7.6687493791058	7.27663359766933	0.176446001440721	0.473007799182844	0.820601745007875
Merged-chr4-139242638-4	chr4	139242145	139243145	+	985.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	48534.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	6.87919786240075	6.73645127378742	6.58177556407453	6.46908535435441	6.93253807807892	5.82627440095147	-0.372523435980762	0.308017397383355	0.70399988465522
Merged-chr17-53587251-4	chr17	53586754	53587754	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	3128.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	5.84970923400558	5.65414349196439	5.71976950227997	5.9777239200588	5.77841484037419	5.80787074483251	0.201213433683491	0.515097740011103	0.84337265078831
Merged-chr13-5424596-3	chr13	5424117	5425117	+	873.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER15-int|LTR|ERVL	433475.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.28259980282991	4.1533715360012	4.90774001469326	4.23556013813005	3.82639449788915	4.28115395546604	-0.946506453523599	0.0794149399692054	0.37263623329147
Merged-chr3-109456523-3	chr3	109456017	109457017	+	772.583313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	115834.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	3.19582789325142	3.31672445003653	3.35332810980382	3.09117839377558	2.94143605262898	3.20315822640349	-0.926278808476927	0.155619767214866	0.525449746121077
Merged-chr13-74247206-3	chr13	74246697	74247697	+	695.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-38497.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	4.32478398166338	4.5968425709938	4.48413555321392	4.19273918051993	4.28909453438274	4.66669951227487	-0.218683466925602	0.63692356515303	0.897256731014262
Merged-chr17-35077148-2	chr17	35076648	35077648	+	649.833374	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_027366, exon 1 of 3)	5' UTR (NM_027366, exon 1 of 3)	206.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	3.83406343946125	3.89019772891929	3.9343871535144	4.06903279635585	4.13118251080463	4.27521189901503	0.816908810171194	0.0958539597738706	0.412762836250283
Merged-chr17-70852927-5	chr17	70852390	70853390	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164074, intron 1 of 2)	CpG	642.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	9.20115527350675	9.54782575322886	9.05070200548178	9.09071234276062	9.50094586988671	8.91735304535404	-0.119530042860721	0.640855745484554	0.898653895821881
Merged-chr18-34858166-4	chr18	34857674	34858674	+	940.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3033.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.96510282346796	5.72573358063194	5.99070080295509	6.87696053034395	6.84002989608117	6.5946768430077	1.46545439660002	2.21194927300642e-07	1.42786559432365e-05
Merged-chr14-93650243-4	chr14	93649762	93650762	+	907.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	240407.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	3.47384818344039	3.38745522601045	3.79848769118135	3.38044323242344	3.82248419211719	3.56492684961203	0.176562936718139	0.772133606889585	0.943680976839558
Merged-chr8-27023127-4	chr8	27022617	27023617	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-682.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	8.6509254260654	8.80553454856001	8.32139161552467	8.67679758891602	9.00074487051188	8.40149763887394	0.15165395428082	0.557342573737872	0.864206014246523
Merged-chr8-120364550-4	chr8	120364051	120365051	+	910.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-124315.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.91042366323989	7.06221119838793	6.58571781234064	6.81390695899008	6.7316432484665	6.14501090127298	-0.416659473743106	0.185674324923311	0.569911016727934
Merged-chr19-29468186-2	chr19	29467686	29468686	+	675.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_021396, intron 5 of 5)	RMER17C|LTR|ERVK	53801.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	5.59797648277576	5.51020801736819	5.06895676511483	5.54825895911275	5.57304475415792	5.09751153235461	0.0213593425464893	0.955657702307594	0.989763164889919
Merged-chr7-48749402-4	chr7	48748924	48749924	+	986.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39579.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	3.45800972205614	3.52905777249207	3.63679470355854	3.60486956712272	3.35581420950925	3.70621748291771	0.0577974852706264	0.920716602140095	0.982463724790289
Merged-chr1-39636362-3	chr1	39635857	39636857	+	911.0833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_170597, intron 2 of 3)	intron (NM_170597, intron 2 of 3)	14825.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	3.4386636340354	3.19093583222679	3.53263367016827	3.01777889583731	2.82991366157637	3.28925258784788	-1.47845023403329	0.0358315054792147	0.232574870689347
Merged-chr5-130081432-4	chr5	130080928	130081928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	2058.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	5.74430575657317	5.54198138169183	5.83853056462454	6.09599796783203	6.12072192503592	5.97195517380902	0.643430286013228	0.0344654296345372	0.227458714231486
Merged-chr17-84701643-3	chr17	84701132	84702132	+	751.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18511.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	2.80881567853682	2.73456480542299	3.00104696433107	2.8547038900828	2.87601772140958	3.01553212980598	0.331138813587749	0.638597123690996	0.89762898904188
Merged-chr1-63114543-6	chr1	63114035	63115035	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081436)	promoter-TSS (NM_001081436)	64.0	NR_045915	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	7.21989910412362	7.15609662375294	7.32245249523316	7.32354569708176	7.09495024082767	7.15928168032105	-0.0532495337444583	0.823203331060289	0.958229268089819
Merged-chr10-62326230-2	chr10	62325730	62326730	+	907.099976	f1_balb.idr|f1_c57bl6.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	14191.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	3.50651634862701	3.48588622122742	3.76657277397843	4.3299493962512	4.06916250116798	4.0403073708453	1.84984334562706	0.000669771765924938	0.0132382996875113
Merged-chr19-40630831-4	chr19	40630325	40631325	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304721, intron 1 of 9)	L1MDa|LINE|L1	18459.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.6108402552141	7.86062651416153	7.7462153925757	7.59393977145992	8.07009010308411	7.5911012570063	0.0547059197580768	0.830479233772691	0.960308134590845
Merged-chr7-80055997-4	chr7	80055473	80056473	+	847.474976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19284.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	5.69287469862093	5.85285719991088	5.63682120807767	5.4998012016164	5.72256372466398	5.69913063824915	-0.166626616415394	0.601917184837895	0.882170097509275
Merged-chr17-56220025-4	chr17	56219529	56220529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1140.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	4.7976523309222	4.99489001058491	5.48506061115934	5.47503857634026	5.31088338192822	5.62472174934185	0.718496001253068	0.0693635300219889	0.344696643936314
Merged-chr11-114890246-4	chr11	114889767	114890767	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001347654, exon 1 of 7)	5' UTR (NM_001347654, exon 1 of 7)	226.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	8.27480543872923	8.06115297805647	8.14685437942944	8.01170328849938	8.29049972327073	7.84914781587714	-0.130407680212499	0.578148149767133	0.872364697539643
Merged-chr4-108768710-1	chr4	108768210	108769210	+	723.0	f0_balb.idr	intron (NM_001347163, intron 1 of 18)	LTR16B1|LTR|ERVL	12378.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	3.44741296609973	3.58869641704129	3.3716688419706	3.31097740457254	3.26743813055135	3.49750870928202	-0.469791751395822	0.434299176576955	0.798342379107878
Merged-chr5-125391220-3	chr5	125390728	125391728	+	877.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1211.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.60939849856038	9.24108846499788	8.6426960474936	8.66949439290727	9.22525571655925	8.886971914227	0.110099372191785	0.690196367470279	0.917732419451996
Merged-chr4-75315622-4	chr4	75315129	75316129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37337.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	5.70779240662217	5.35333283253232	6.27521942357482	5.77275543865579	6.21037524686982	5.99565605935585	0.320439266608155	0.403730746477136	0.778974548258483
Merged-chr3-95687927-4	chr3	95687402	95688402	+	992.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144899)	promoter-TSS (NM_144899)	15.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.70307762028058	3.73489023812566	3.49054092620007	3.68513594507374	3.39860011171689	3.38709015020915	-0.554135815674384	0.346967863729708	0.735156424771677
Merged-chr7-66135836-4	chr7	66135336	66136336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26321.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	7.29583385230175	7.28873216747372	7.34668243211334	7.43823899144934	7.58519772984632	7.48799234784024	0.293338626436373	0.192020221049192	0.57896940713307
Merged-chr7-80749298-3	chr7	80748834	80749834	+	864.2777710000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016721, intron 14 of 37)	B2_Mm1a|SINE|B2	53997.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	2.76080045265483	2.65247778096609	2.85695738853842	2.77075886719159	2.63589223622924	2.98693232812035	0.22362828161962	0.762709489935505	0.941663714620562
Merged-chr10-82699105-4	chr10	82698601	82699601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	94.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	6.60855778114853	6.72257331961515	6.73367076975171	7.16917689213024	7.00570608256658	6.76069979873902	0.477510129559988	0.0669398306279614	0.338143673984297
Merged-chr3-109030817-4	chr3	109030317	109031317	+	974.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3210.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	5.56678982846892	5.47322701209996	5.83447761019717	5.60233986625528	5.46670677701651	5.56508411435345	-0.150095933876476	0.650439958892496	0.902613484298836
Merged-chr2-165916631-2	chr2	165916135	165917135	+	746.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm2|SINE|B2	-31797.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.4573407240499	4.48031696154828	4.65268688364457	4.60448280397874	4.36992061434403	4.47671982101491	-0.10675338531471	0.804135313922193	0.953575578623273
Merged-chr10-7780239-3	chr10	7779754	7780754	+	812.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145418, intron 1 of 7)	intron (NM_145418, intron 1 of 7)	663.0	NM_145418	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	4.66053671559451	4.49631977478043	4.72728673434376	4.47414946194916	4.56977586276351	4.47079691765625	-0.28374998743413	0.501018139519677	0.835364873648088
Merged-chr8-117241266-4	chr8	117240775	117241775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-15744.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.14667879122142	3.238161530455	3.1620512787586	3.09764288450215	2.84006424898963	2.99555010676342	-0.939718310571549	0.164309053137386	0.538727547224194
Merged-chr13-69383470-3	chr13	69382953	69383953	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150411.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	4.22371672726628	4.45775449408736	4.51479896605758	4.9847858517122	5.27975394821504	5.04543010923824	1.66350456246966	6.28677868672583e-05	0.00191685702075882
Merged-chr6-86396142-4	chr6	86395659	86396659	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	991.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	7.52103713561318	7.42603388634938	7.04577996115074	7.34418095535908	7.43898412352553	7.11739831531471	-0.0622658031993827	0.811678510448837	0.955304895434479
Merged-chr3-96058466-3	chr3	96057954	96058954	+	581.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	1.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	6.32253446494633	6.47981556427742	6.45408565644261	6.3503939977814	6.35358461576948	6.34579878138198	-0.113372209550418	0.671919102107023	0.910704250592451
Merged-chr10-14054435-3	chr10	14053934	14054934	+	893.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88055.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.14505581830269	5.07735581962653	4.89910874603872	5.00148450914475	5.02966044092894	5.03802640415119	-0.0637098214038394	0.863075132474895	0.968167003113825
Merged-chr6-67069406-4	chr6	67068904	67069904	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040278, intron 4 of 6)	Lx5|LINE|L1	-31997.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.23397336962991	3.41217476009325	3.29493411113882	3.53633691195842	3.17265866897828	3.24967663800503	0.0448288961750819	0.943302225658471	0.987377570608805
Merged-chr18-23810015-2	chr18	23809515	23810515	+	887.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	6045.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	5.5058118473436	5.07595269075735	5.27474048303988	5.48430367216876	5.80660209592006	5.55250664368887	0.632870913715527	0.0768616757361096	0.36531137914264
Merged-chr12-38779197-1	chr12	38778697	38779697	+	1000.0	f0_c57.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-885.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	7.38435337999092	7.4811399105431	7.20702553469453	7.47425523092838	7.56586680176446	7.31244537745125	0.135881897716934	0.568269058760675	0.868531823304055
Merged-chr7-42693545-3	chr7	42693011	42694011	+	651.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-793.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	4.32141384343661	4.21701898974216	4.63494537917853	4.35445341881765	4.44455543678722	4.54678441513825	0.145351779261176	0.748257025024142	0.936913440140693
Merged-chr17-64617999-4	chr17	64617495	64618495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	16346.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	5.31513800664246	5.53313549885516	4.81542964464848	5.06769974440124	5.02748398331864	4.40554177912456	-0.806062616286303	0.0882405090577313	0.394284730900624
Merged-chr3-19311485-6	chr3	19310985	19311985	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122759)	promoter-TSS (NM_001122759)	-163.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	6.6365584111019	6.30655111026871	6.40162747925155	6.58997618652533	6.16568172747321	6.22169245638102	-0.19378066296556	0.51707693000127	0.844470690132204
Merged-chr5-135907096-4	chr5	135906606	135907606	+	983.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1B|DNA|hAT-Charlie	19187.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	7.22892785906249	7.15552920108898	6.90385903900325	6.49715909463512	6.38257070326734	6.09076186525192	-1.19938527909328	1.66264022553016e-05	0.000621775136565903
Merged-chr1-154096332-4	chr1	154095851	154096851	+	932.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-104836.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	4.90003580685582	4.51806886620926	4.8091685058672	4.90819411080699	4.6599628164939	5.11339973890011	0.328811675851189	0.436865209493201	0.799681606793859
Merged-chr14-52015772-5	chr14	52015295	52016295	+	897.966675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253694, intron 1 of 5)	MIRb|SINE|MIR	-1070.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	5.48602572493281	5.65152474664869	5.79498080235307	5.63526365463635	5.81213762349046	5.78233737036298	0.19201729825282	0.548007939250269	0.859456555901125
Merged-chr1-134060263-2	chr1	134059763	134060763	+	636.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18892.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.40402705329097	3.72824793871242	3.35345511831605	3.29290754320408	3.19961905615883	3.36816762704702	-0.887293873871193	0.153149936438627	0.521945521654116
Merged-chr1-194984281-1	chr1	194983781	194984781	+	645.0	f0_balb.idr	Intergenic	Intergenic	-7322.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.27071371649495	4.32634245171994	4.50411150801093	4.02861589679461	4.0347213774479	4.8351029424026	-0.0401355071759165	0.940683061625923	0.986881313555047
Merged-chr9-106372024-4	chr9	106371530	106372530	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	3398.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.09622953949966	5.37881270518992	5.20075037634235	5.31076963076603	5.59549904289702	5.67171114606739	0.5833228857538	0.100022217807863	0.421843317698826
Merged-chr7-27577134-4	chr7	27576619	27577619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175107, intron 8 of 9)	Lx8|LINE|L1	-14433.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	5.44924730102562	5.47198255828279	5.95519183685321	6.4265232840599	6.74473217494633	6.47714305602906	1.60033024291885	4.97817216822557e-07	2.92118300263549e-05
Merged-chr7-55956957-4	chr7	55956448	55957448	+	673.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023647, intron 1 of 6)	MTD|LTR|ERVL-MaLR	5545.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	6.01196772360644	5.94470334651279	6.05323387081111	6.16068587910111	6.61196184351377	6.39884309315216	0.687402384508734	0.0201791369999802	0.162479739838819
Merged-chr9-118682869-2	chr9	118682387	118683387	+	767.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133721, intron 13 of 27)	intron (NM_133721, intron 13 of 27)	-28805.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.18899537082191	3.13854317269192	3.54221756845029	3.53816170790061	3.04923556075299	3.66125798062262	0.536079995947839	0.430214915800867	0.796150673085838
Merged-chr5-30014742-4	chr5	30014247	30015247	+	959.158325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314054, intron 2 of 4)	intron (NM_001314054, intron 2 of 4)	1633.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	3.49197272490539	3.65227756195795	3.61263086344759	3.90095413813406	3.87884854081113	3.84143940609474	0.960972793375317	0.0735616701215445	0.356406163239401
Merged-chr17-71178708-3	chr17	71178193	71179193	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-4839.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.81080588997534	8.03614747178066	7.75674824918568	7.64493044761218	7.83918214688144	7.5817689572313	-0.256339069702954	0.269092620014354	0.666230026367363
Merged-chr1-36556735-4	chr1	36556229	36557229	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	828.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	7.21719960271297	7.46368155794916	7.7588379066834	7.53226113562627	7.59051184481871	7.61697339455812	0.128609735198477	0.608778697637541	0.88502442296849
Merged-chr2-121509773-4	chr2	121509272	121510272	+	911.6041869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290987, intron 1 of 11)	intron (NM_001290987, intron 1 of 11)	3049.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	3.91940992965962	4.44992093716401	3.99340572798137	4.04562820808841	3.69301795232764	4.11154575177868	-0.561581084941481	0.304517719306651	0.700969682849711
Merged-chr13-37355787-4	chr13	37355291	37356291	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.63579692933843	6.70794174365852	6.56858816239789	6.450014871196	6.91391173158785	6.97342161392787	0.246890907291938	0.380785945556233	0.762800321589017
Merged-chr3-104501852-2	chr3	104501352	104502352	+	924.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025067, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	10066.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	2.66673456526956	2.5900111979753	2.83781207682125	2.59652883465841	2.57673493987975	3.23630639516979	0.676568254399365	0.404124200511984	0.779358170625725
Merged-chr19-55294238-4	chr19	55293738	55294738	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027976, exon 19 of 22)	exon (NM_027976, exon 19 of 22)	21798.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	4.46173018451328	4.55502511578899	4.98480578207779	4.84625985523488	4.63185821694599	4.7699150411849	0.175601860930017	0.684343732525742	0.915853993305035
Merged-chr4-141512352-3	chr4	141511858	141512858	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	26239.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.67230490772401	3.61609416704278	4.10688895923131	4.72335205990578	4.6782328013425	4.89512885845662	2.77496691579103	1.11143607202593e-07	7.843967148527e-06
Merged-chr19-38054889-4	chr19	38054389	38055389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-95.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	5.50135305987048	5.67398714401502	5.51363499676757	5.6972719139941	5.86792802731622	5.39030034171794	0.209127721515348	0.537435421649591	0.854490896255191
Merged-chr11-53567397-4	chr11	53566917	53567917	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290805)	promoter-TSS (NM_001290805)	48.0	NM_001290806	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	4.91335120831546	4.53505503482839	4.41881638751471	4.31335968571342	4.40414709845582	4.1470933203029	-0.870765311564962	0.0633381319718534	0.327832749758272
Merged-chr11-109370043-3	chr11	109369555	109370555	+	796.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-6401.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	7.69116761155712	7.71773695991051	7.49639480280472	7.57830453431226	7.8800532505682	7.24542835963592	-0.052617055092519	0.842258196483063	0.963002495523594
Merged-chr15-6569939-4	chr15	6569427	6570427	+	877.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9920.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.43436376080518	7.63881099792073	7.66778180769609	7.64869934177001	7.83948564204531	7.75063015339043	0.244519278297125	0.281024614930824	0.679179223823941
Merged-chr5-64339501-1	chr5	64339001	64340001	+	816.0	f1_c57bl6.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	109144.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.28725578625462	4.07171296741838	4.14352120832149	4.32622579561134	4.4476226623241	4.67374786439363	0.822683203972914	0.0753635138926126	0.361578000575247
Merged-chr10-127607261-4	chr10	127606762	127607762	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008512, intron 4 of 88)	L1ME3G|LINE|L1	13886.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.64800831030513	6.269737166227	6.72508576829239	6.52600491358373	6.08502792387976	6.32431813979667	-0.384739192217675	0.207891037503609	0.598730771894965
Merged-chr16-87713152-4	chr16	87712623	87713623	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	14169.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.03518064134185	5.08678548254745	5.03420151855165	4.88241061035559	4.73308039293087	4.63675077800559	-0.652568961240134	0.0901637689215778	0.399273383950327
Merged-chr4-133276982-2	chr4	133276482	133277482	+	940.1666869999999	f1_balb.idr|f1_c57bl6.idr	intron (NM_025667, intron 1 of 5)	intron (NM_025667, intron 1 of 5)	808.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	6.6578194174725	6.99534397390559	6.74862606656584	6.65908633980432	6.47986640967029	6.50538741379342	-0.414440036737261	0.122891127148766	0.469060775586904
Merged-chr1-37492401-3	chr1	37491934	37492934	+	900.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3829.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	7.95551190752067	7.85273150619203	7.5637280712188	7.72624508053843	7.85595152008661	7.68765014112272	-0.0665142664406451	0.776150087382109	0.94480820353868
Merged-chr5-125434145-4	chr5	125433646	125434646	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_203319)	promoter-TSS (NM_203319)	-98.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	6.52222375367815	7.00875139790342	6.41673778657019	6.63019645661789	6.70743954199256	6.62248696524677	-0.0509037405420604	0.862616424584396	0.968083292979043
Merged-chr10-81127768-3	chr10	81127259	81128259	+	952.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8512.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	2.95831644874532	2.88028687038785	2.9385717755486	2.99475829404598	2.8518230843777	3.06988457705416	0.211305756492342	0.757028920867576	0.939811450168582
Merged-chr7-127027379-4	chr7	127026881	127027881	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-902.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	7.41321764606782	6.99316173525278	7.06039459102803	7.44680228127448	7.43131386136159	7.11835404860862	0.258251159304274	0.328393007043677	0.720562985671201
Merged-chr7-27165778-2	chr7	27165278	27166278	+	777.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	-50.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	5.26158251763284	5.25858697972482	5.53278967623415	5.34671387768178	5.21510456047598	5.33737501843889	-0.100080488205814	0.773694687368331	0.944173663294033
Merged-chr3-9154351-3	chr3	9153839	9154839	+	880.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92375.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	2.21725581185948	2.18233889045842	2.35463806107864	2.18879257338218	2.0500930137635	2.16905469947203	-0.84361240389475	0.342219476766814	1
Merged-chr1-39443815-2	chr1	39443315	39444315	+	731.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	34932.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	2.44169877435426	2.56158457868115	2.36711362917623	2.63527480491786	2.39835198738874	2.63834079815148	0.569034572683635	0.485885503620618	1
Merged-chr16-11018387-2	chr16	11017887	11018887	+	824.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLTR14|LTR|ERV1	9489.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	3.00025814912232	2.76969407460665	2.82353424276966	2.98731581758699	2.66073810603769	3.07642998673255	0.222606683272844	0.763892889512006	0.941838906550437
Merged-chr9-58903129-3	chr9	58902649	58903649	+	819.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008684, intron 19 of 28)	intron (NM_008684, intron 19 of 28)	79637.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	2.41045051565786	2.41345103957674	2.5082715789074	2.50824934674491	2.53861276081461	2.70331926340129	0.853924918724022	0.279106999927283	1
Merged-chr10-10429838-4	chr10	10429357	10430357	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	42457.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.29406996615371	7.84110826265548	7.57118682612247	7.79443104953789	8.03239818633163	7.53811420844583	0.317332828539985	0.242105483610818	0.639162163852051
Merged-chr8-25007975-4	chr8	25007481	25008481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	8941.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	5.95598411726738	6.14440531843819	5.67493065581966	5.93632569879562	5.98256038435316	5.89750676028082	-0.0190178307828883	0.95154982137313	0.988851751924602
Merged-chr2-122146843-4	chr2	122146359	122147359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-828.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	8.11430548027027	8.4239306315968	8.12911317315536	8.29004941805297	8.81303863138525	8.23906822591643	0.347409279527614	0.17957084206367	0.56110368604883
Merged-chr14-67053063-2	chr14	67052522	67053522	+	621.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360033, intron 2 of 10)	intron (NM_001360033, intron 2 of 10)	19449.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	3.48031265847447	3.23998100986936	3.20761800981379	3.45999324116013	3.40058689450564	3.33971674671604	0.322112698377225	0.600162716668198	0.881490627508743
Merged-chr19-3927121-2	chr19	3926621	3927621	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	2595.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	4.53341279096226	4.40357878831864	4.80016903932127	4.54032918969234	4.7781735075478	5.03217499326665	0.500820355129611	0.251245828943853	0.648731936769727
Merged-chr16-10676857-2	chr16	10676357	10677357	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177562, intron 18 of 22)	intron (NM_177562, intron 18 of 22)	108679.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	2.1028958313365	2.17328826036877	1.97256138612507	2.19530512843012	2.04017047838284	2.38405030268963	0.879784620984044	0.353237481313892	1
Merged-chr7-45530662-2	chr7	45530162	45531162	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_148927, intron 2 of 19)	intron (NM_148927, intron 2 of 19)	4332.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	2.10651596653398	2.26512275882351	2.17842878341144	2.41503998552109	2.28056775728656	2.51569840381294	1.48952806400072	0.0936171848777703	1
Merged-chr8-104239738-4	chr8	104239225	104240225	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045642, intron 4 of 8)	PB1D10|SINE|Alu	8833.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	7.2890697076849	7.24839044329384	6.91188465974012	6.99655975422758	7.23708459363837	6.94086486731405	-0.14557830386232	0.576927673640767	0.87187513064165
Merged-chr19-5648886-4	chr19	5648358	5649358	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009045)	TTS (NM_009045)	11368.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	7.97173680479229	8.04199412261513	7.93994183598934	7.77846083611244	8.26699256719827	7.87724581931266	0.0194801412386344	0.935692100273438	0.985919389628236
Merged-chr2-3519993-4	chr2	3519492	3520492	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177647, intron 2 of 3)	RMER10A|LTR|ERVL	6927.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	6.07045356452508	6.35399196294797	6.1077018815734	6.09396689762524	6.10941198166384	6.27193126423986	-0.0571673010415216	0.844132074392369	0.963711687630021
Merged-chr16-36635544-2	chr16	36635044	36636044	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	30533.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	4.05279780977364	4.06454315387495	4.28427906222711	4.31503428793348	3.96878676236719	4.07862810844502	-0.0121222219565861	0.980290233632926	0.995500659055379
Merged-chr15-86165863-2	chr15	86165363	86166363	+	963.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_145475, exon 2 of 13)	exon (NM_145475, exon 2 of 13)	-19865.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	6.21267046469651	5.52944594965815	5.89851764614599	6.28601345648542	5.85056169605395	5.37792162638154	-0.0260418579054248	0.948207280738879	0.988083630162243
Merged-chr5-99335204-5	chr5	99334734	99335734	+	903.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-82307.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.01696874820741	6.68608841174579	7.05263342935574	7.05334609097809	7.04022457280432	7.1956849473818	0.260878389057935	0.310372213081103	0.705829393476587
Merged-chr11-11553786-3	chr11	11553284	11554284	+	858.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	64518.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	3.82015945825241	4.1765756490481	3.91341456278342	4.27265921409272	4.17635295797258	4.52037508246952	0.946649325553993	0.0612890943549232	0.321030438937538
Merged-chr9-99090115-4	chr9	99089606	99090606	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029094, intron 7 of 23)	intron (NM_029094, intron 7 of 23)	50105.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	7.7196275411143	7.95094944029219	7.4555805373207	7.7598534099472	8.00108270992545	7.29135220806908	-0.00474762453036472	0.986735973355896	0.997073310870088
Merged-chr4-120031567-2	chr4	120031067	120032067	+	558.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-129639.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	3.53168889708662	3.19674403294385	3.24987244081932	3.23600001017542	3.08063437142942	3.26417064804368	-0.600652766031208	0.349502156219638	0.737544392967883
Merged-chr8-84069919-4	chr8	84069406	84070406	+	625.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3070.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	6.50134406536065	6.6475524571367	6.77397435931352	6.05918551891656	6.24008240008593	6.2534994850665	-0.739977760211996	0.00751520070114143	0.0822877817151358
Merged-chr19-5107082-4	chr19	5106584	5107584	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029576)	promoter-TSS (NM_029576)	-88.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	6.17613198549748	6.01178856685772	6.29478420470987	6.37349383916712	6.00738231025769	6.21620740908385	0.0736436776565277	0.804909935397149	0.953692253756048
Merged-chr12-100067608-4	chr12	100067108	100068108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MC4a|LINE|L1	-44723.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	6.63340036109519	6.88012623338854	6.59901667428493	6.85138905946732	6.83485301400504	6.64084360493205	0.106450393370545	0.686091613179256	0.91659539440007
Merged-chr7-100501335-2	chr7	100500841	100501841	+	742.5	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	7983.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	6.54202926809299	6.46980022815619	6.73697160850297	6.75427430049526	6.94934245940967	6.41455913086498	0.24754129727957	0.386595894146155	0.767131316757601
Merged-chr9-123814932-2	chr9	123814432	123815432	+	758.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	8455.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	5.57729720585235	5.473606316108	6.09516342929436	5.70783258939291	5.72789051737271	6.3208585584457	0.370408393690869	0.326290249140492	0.718633114094283
Merged-chr9-121249944-4	chr9	121249461	121250461	+	969.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177589, intron 15 of 36)	intron (NM_177589, intron 15 of 36)	27211.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	3.75617483361332	3.76697039880148	3.90159730940486	4.22446421162766	3.77080305878081	4.01981277281063	0.643165944870135	0.223829417414536	0.618565816341582
Merged-chr17-29082139-4	chr17	29081633	29082633	+	963.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3007.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	3.94050545960651	3.47175247357529	3.49693837311137	3.87914562259637	3.45120592015335	3.68214045225576	0.0688828208173407	0.909787227726514	0.979638636618153
Merged-chr11-94550348-4	chr11	94549846	94550846	+	954.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-1139.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	3.20417650883164	3.00866635355447	3.19376991089982	3.12809181506312	3.02959792252266	3.15092771228639	-0.156607557715042	0.809530988458786	0.954749848816598
Merged-chr17-15709889-3	chr17	15709414	15710414	+	781.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007690, intron 2 of 35)	Lx7|LINE|L1	4947.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	3.79884222783721	4.05418592006399	4.23187655389098	4.19039925548751	4.05202607580832	4.34080649486819	0.456699840157758	0.363445180009569	0.749053737355069
Merged-chr2-167014440-2	chr2	167013939	167014939	+	858.625	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	-874.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	5.29567307789613	5.71287311635634	5.73939965560338	5.60575004334712	5.65002743312588	5.77602630904299	0.152151212290553	0.653666989945548	0.903478727917961
Merged-chr1-34859738-4	chr1	34859216	34860216	+	747.458313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	9727.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	6.22057063712095	6.44426441346719	6.23732726780673	6.20464539832542	6.42311053993666	6.10220553661055	-0.0787989172226984	0.785410055918367	0.947919294676116
Merged-chr1-157043551-1	chr1	157043051	157044051	+	852.5	f0_balb.idr	Intergenic	Intergenic	65099.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.25057808966884	4.12547302461837	4.38242060187477	3.86897828467336	3.88770069737531	4.05584951076436	-0.923883259450843	0.0596991496103641	0.316278460431429
Merged-chr16-13239134-2	chr16	13238634	13239634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17347.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	3.33648523010259	2.893769288514	3.19120195662237	3.22103456566613	3.1015233965131	3.37396121633147	0.3266826843068	0.630308762876991	0.894705326625644
Merged-chr6-97450916-4	chr6	97450318	97451318	+	932.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 2 of 23)	L1_Mus1|LINE|L1	8468.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.24545608961731	7.21460198023193	7.2858248372568	7.06750082187794	7.378324973544	7.3866284029359	0.0577877209891204	0.811071976751425	0.955104401946399
Merged-chr12-73445314-3	chr12	73444807	73445807	+	943.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35744.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	3.18409328411574	3.19798171271301	3.19696226037429	2.89363346022397	2.68449572375243	3.15640071902018	-1.29834598838084	0.0755429175937688	0.361875364832603
Merged-chr11-84180218-4	chr11	84179734	84180734	+	979.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-12758.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	7.02143178468092	6.83243583304487	6.61204314716312	7.01872731705199	6.69272983092555	6.46780228520481	-0.1353531659222	0.641526882794629	0.899094993575576
Merged-chr1-150405638-3	chr1	150405144	150406144	+	764.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133780, intron 7 of 51)	intron (NM_133780, intron 7 of 51)	-12564.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	3.29994024863046	3.3941669941794	3.35728214579221	3.36437141416193	3.33846582661589	3.19517003971675	-0.180331058451229	0.766953122718863	0.942573703853445
Merged-chr6-137687913-4	chr6	137687416	137688416	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-38631.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.68513967728812	3.10608329094261	3.27727023735455	3.26208014264769	3.20447162375369	3.23161262012474	-0.601065534791223	0.364970865961174	0.750191344455358
Merged-chr2-127082619-1	chr2	127082119	127083119	+	568.0	f1_balb.idr	intron (NM_026678, intron 2 of 7)	intron (NM_026678, intron 2 of 7)	11962.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	4.4533661238105	4.44060900603485	4.95277350545623	4.46384841622365	4.13990346451969	4.55948980215861	-0.587580615327704	0.216900725809901	0.610529941246584
Merged-chr15-28413735-4	chr15	28413225	28414225	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	209959.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	3.60605190602668	3.82642155039489	3.81216157217295	4.01705871128859	3.92584516341127	3.93225567729761	0.65927059374293	0.204579087177113	0.595196387616547
Merged-chr2-52953380-2	chr2	52952880	52953880	+	799.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	95512.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.07330201998433	5.32112795858513	5.49269892372696	5.36795256988965	5.17060252371944	5.09246390927611	-0.162616488859997	0.658547363466401	0.905014667687917
Merged-chr4-145219908-3	chr4	145219435	145220435	+	854.119019	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011610, exon 9 of 10)	exon (NM_011610, exon 9 of 10)	-24930.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	4.43893022721518	4.41165430764599	4.52187877966201	4.7295784211041	4.40783262126709	4.78153648078067	0.455350429962678	0.29414511090897	0.69079067341099
Merged-chr7-136321097-2	chr7	136320597	136321597	+	802.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	28318.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.5584587853005	4.83426746593197	4.83662235156228	4.66898444885402	5.01190282173498	4.90169599720263	0.286976551698342	0.483386292991302	0.826174950723369
Merged-chr9-107642979-1	chr9	107642479	107643479	+	552.0	f1_c57bl6.idr	Intergenic	B3|SINE|B2	-7637.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.08289503922926	3.33848962037726	3.34973551823984	3.26564073169637	3.06782173470938	3.36633553116915	-0.114936088149356	0.858354178530039	0.966893979238307
Merged-chr14-14012568-4	chr14	14012091	14013091	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	100.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	7.92676650879278	7.57920937282498	7.58854734884114	7.74036216031952	7.06619836589707	7.79470462116384	-0.204171943677551	0.485096156173713	0.827336504644498
Merged-chr11-114879834-4	chr11	114879336	114880336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10205.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	6.6211779669656	6.17394916827047	6.38131363538018	6.40267170781242	6.46944630502493	6.51365631008628	0.0885079780956608	0.756965902304072	0.939761258059431
Merged-chr6-82863673-3	chr6	82863181	82864181	+	847.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	18172.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	2.29596220348589	2.22721529388792	2.39955804758947	2.18506550718921	2.15797654121228	2.21672144483013	-0.863167353909621	0.319014596379091	1
Merged-chr1-161035059-4	chr1	161034566	161035566	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	150.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	7.5095324287171	7.88753659485456	7.57535891818919	7.55281327419323	7.79218766167942	7.48070937796467	-0.0730388255827557	0.768549038500446	0.942871018290895
Merged-chr17-32788032-3	chr17	32787516	32788516	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	271.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	7.3243269943027	7.79991218627862	7.52147473044896	7.59330809086953	7.62002968177464	7.48721124554065	0.00510920383391488	0.983546028188143	0.996376635146826
Merged-chr5-17821623-4	chr5	17821120	17822120	+	976.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	14276.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	4.25591991840624	4.02900479175425	4.22644118796458	4.05760387310216	3.85144605002938	4.20557326541022	-0.39187917670895	0.429005445607285	0.795570481157701
Merged-chr13-30645816-4	chr13	30645336	30646336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M3|LINE|L1	-14223.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	6.57364282660666	6.97246639143001	6.48635987212443	6.79258147549167	7.0267459871199	6.8011291805283	0.275920073304678	0.329370633318886	0.721349826840182
Merged-chr6-113691230-4	chr6	113690721	113691721	+	929.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113553, intron 11 of 11)	intron (NM_001113553, intron 11 of 11)	-5829.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.8501831709007	5.1246251241236	5.02260307648739	4.7132878132218	4.66315475986534	4.91279779618163	-0.550446996372597	0.162034203915143	0.535322342557572
Merged-chr8-126929011-2	chr8	126928511	126929511	+	727.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	16910.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	3.91277683276492	3.54080427806782	3.59926596814438	3.56856259517061	3.81363782122965	3.82574514817828	0.139354029339871	0.806280917271438	0.954125791654011
Merged-chr5-140636875-4	chr5	140636372	140637372	+	815.049988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	12159.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	4.03430954488692	3.99652233773956	3.98413739489434	3.85202782295687	3.80227847614996	4.05256654681725	-0.330092592929265	0.51112068600292	0.841331921585713
Merged-chr11-104550607-4	chr11	104550126	104551126	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001285990)	promoter-TSS (NM_001285990)	-6.0	NM_001285988	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	8.17050015395556	8.85514306262057	8.27336745462505	8.28548783433319	8.37157187587187	8.19187360788063	-0.264326889575957	0.316072406850198	0.71019071166749
Merged-chr1-37428097-2	chr1	37427593	37428593	+	597.5	f0_balb.idr|f0_c57.idr	intron (NM_198006, intron 2 of 2)	intron (NM_198006, intron 2 of 2)	2010.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	6.59324091811549	6.78897160064789	6.74878443980554	6.90190984041772	7.30034561100695	6.65948370791727	0.43787972302347	0.128881309146146	0.48001235268934
Merged-chr13-19691084-1	chr13	19690584	19691584	+	709.0	f1_c57bl6.idr	intron (NM_001167909, intron 5 of 14)	intron (NM_001167909, intron 5 of 14)	6676.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	4.08493281538595	4.47325159873791	4.41081528478867	4.20124741081307	4.70571871088179	4.39166436434659	0.332932063609539	0.494473086544524	0.832036472279676
Merged-chr2-170317005-4	chr2	170316495	170317495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39366.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	4.80156129354709	4.07843112536408	4.2817799419277	4.7309960095322	3.86531233080795	4.56870555776242	0.0373393128819953	0.947918259298415	0.988023646838258
Merged-chr1-80641454-4	chr1	80640957	80641957	+	946.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23895.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	5.85701552396982	5.62706808452467	5.37407256404766	6.126622776157	6.223494779008	5.82789467998625	0.764350272160134	0.0225963210501776	0.175080983512727
Merged-chr6-88828190-4	chr6	88827706	88828706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	13729.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	6.98218580579127	6.97149204637901	6.5860059017035	6.76878558319754	7.037450594708	6.69747495988461	-0.0264772577138436	0.923648054995979	0.982727549942016
Merged-chr7-43353332-4	chr7	43352853	43353853	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145581, intron 5 of 9)	intron (NM_145581, intron 5 of 9)	2012.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	5.80028520565337	5.78481572040874	6.0156408604237	6.23928003359685	5.91586939747856	6.03173784423551	0.356408672397845	0.24394636515381	0.641094532176687
Merged-chr4-146482560-2	chr4	146482060	146483060	+	737.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19440.0	NM_001243138	100041433.0	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247	zinc finger protein 981	protein-coding	3.18169660140767	3.63113871919201	3.22504334584062	3.48291797079368	3.19027160631215	3.57830062649543	0.206724648110334	0.753432939557316	0.938549578325581
Merged-chr7-114079929-2	chr7	114079429	114080429	+	945.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	37852.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.19133504274636	6.38059078388985	6.311187938848	6.86752510292301	7.14386541256664	6.66655989444132	0.987908143530305	0.000412928335247205	0.00902046230486989
Merged-chr2-165969685-3	chr2	165969172	165970172	+	801.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22965.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	6.93443136989874	6.71619640274129	6.82906651031263	6.71990016418855	6.76252683335322	6.43047254161369	-0.270958481432199	0.309110868138185	0.704802606494279
Merged-chr15-81083494-4	chr15	81082984	81083984	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	21563.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.5149349589783	8.5688971250777	8.2556592068933	8.22261712640028	8.40014897061215	7.82980894722898	-0.385429175959748	0.122070011879045	0.467378608401301
Merged-chr13-89383131-3	chr13	89382678	89383678	+	849.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER13B|LTR|ERVK	-157458.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	5.47687478389849	5.48287709946004	4.88999273756535	6.42185001375425	6.60323795066854	6.05774010945308	1.87017143664323	1.04243351070343e-06	5.61115472193496e-05
Merged-chr11-62494944-4	chr11	62494443	62495443	+	965.7000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	36483.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	4.14547686546724	3.77660836407225	3.9558321465441	4.39576415164392	4.22815533908253	4.26673600010534	0.929846769281821	0.060569704251422	0.318677455033343
Merged-chr4-63544751-4	chr4	63544232	63545232	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-33.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	7.87222355186286	8.36309176546629	7.98543036127011	8.05328439156632	8.18093006387333	7.86706021956727	-0.0717158276127307	0.772711949142257	0.943848608021176
Merged-chr17-27013086-2	chr17	27012586	27013586	+	754.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4949.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	3.19020365311872	2.85215973295855	3.29490648859779	3.12924415096145	3.33391864492215	3.25535591357932	0.512708656229839	0.452150852212507	0.809286173636239
Merged-chr17-85393232-3	chr17	85392728	85393728	+	755.133301	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028576, intron 4 of 10)	intron (NM_028576, intron 4 of 10)	225168.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	3.59117273974096	3.87701284532619	3.94393067411282	4.09040941296815	3.78426123809342	3.7047557217243	0.200523332166673	0.715836622334822	0.92647595514209
Merged-chr15-76723867-4	chr15	76723374	76724374	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176828)	promoter-TSS (NM_176828)	-29.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	6.60594796594952	6.53589596205201	6.40184504506245	6.85844204778748	7.0383885486809	6.53820511268419	0.50028321650054	0.0728525920358351	0.35460268947482
Merged-chr7-73452421-3	chr7	73451918	73452918	+	571.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081345, intron 32 of 38)	intron (NM_001081345, intron 32 of 38)	-76644.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	4.42034614460706	4.10011003323898	4.48231717069227	4.07639529822021	3.92084727883345	4.11959675138291	-0.851712391196816	0.0813296935992	0.377301930899911
Merged-chr2-75659099-4	chr2	75658599	75659599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198090)	promoter-TSS (NM_198090)	-160.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	8.85389697308585	9.35738767646151	8.51396080837409	8.7155175813948	9.12309600014137	8.44651377148094	-0.224764265778407	0.452250045300406	0.80933460446826
Merged-chr5-148482894-2	chr5	148482394	148483394	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	68779.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.17399089901543	4.93511234246695	4.81028119635715	5.33875868458503	4.99719523411331	5.26799294841076	0.444468855930582	0.251144629915563	0.648720776270888
Merged-chr18-4803458-4	chr18	4802905	4803905	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9081.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	6.06128054342633	6.0514946127561	5.98384293208179	5.08577808508133	5.29200239475245	5.5146900497474	-1.36372441198255	3.33925632873227e-05	0.00112703243343745
Merged-chr5-146807906-3	chr5	146807391	146808391	+	876.8333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	URR1A|DNA|hAT-Charlie	-12935.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	6.63016260635518	6.88366656542402	6.99870011526692	6.82615549517074	7.20235633296692	6.83188312452345	0.20621807397576	0.453925832625759	0.809981786389402
Merged-chr11-53609483-2	chr11	53608983	53609983	+	880.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7855.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	2.48640153562652	2.37796624419953	2.7597117882625	2.41166668151225	2.37176560182057	2.71602819464016	-0.246231904811069	0.767159368969357	1
Merged-chr14-8114344-4	chr14	8113850	8114850	+	928.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16139.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	5.22929224467296	5.49498697946223	5.28856891543774	5.61961799212492	5.45684344069061	5.38429499090111	0.283693044712005	0.408783659149009	0.782382305013704
Merged-chr3-144603753-1	chr3	144603253	144604253	+	677.333313	f0_balb.idr	Intergenic	Intergenic	33326.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	2.83213747852078	2.81823005920987	2.98766183706881	2.84380039645104	2.84101610634648	2.88302236928416	-0.109756141742099	0.874841619154707	0.970813891247597
Merged-chr12-102469570-4	chr12	102469062	102470062	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013747)	promoter-TSS (NM_013747)	-348.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	8.47102321309452	8.46004124533908	8.07280140225262	8.18527574924382	8.17500497482789	7.81528618601308	-0.38942249232534	0.109547707373596	0.442251498478588
Merged-chr17-26465195-4	chr17	26464686	26465686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	43286.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	7.43927598228019	7.62992026064031	7.29955428871083	7.44869565814451	7.66627212433502	7.50876704201839	0.114154361901631	0.632366542410799	0.89551362251836
Merged-chr14-29970736-1	chr14	29970236	29971236	+	642.0	f0_balb.idr	intron (NM_019979, intron 2 of 4)	MTC|LTR|ERVL-MaLR	2356.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	3.0064786458888	2.83714912529122	2.95367449228602	2.81786218876355	2.66592538226521	3.08312622486089	-0.360775979462849	0.620941401215377	0.890431574533892
Merged-chr1-136128149-3	chr1	136127642	136128642	+	661.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_046169, intron 2 of 2)	intron (NR_046169, intron 2 of 2)	3041.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	4.94707522384837	4.66468985486356	4.88236090932032	4.8447524243251	5.01911062396637	4.91092171505546	0.215239647864236	0.582324101520464	0.873702353685426
Merged-chr10-125316798-3	chr10	125316308	125317308	+	710.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001358496, intron 1 of 5)	ID_B1|SINE|B4	-7992.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.64889335210448	4.68108266834358	4.74703343229945	4.68374691226702	4.98899565956047	4.92327330464513	0.423439857003839	0.288860099470055	0.686246592378696
Merged-chr8-71364351-4	chr8	71363925	71364925	+	830.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-2423.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	3.69162190164253	3.59822249090503	3.66008918416285	3.43221067920836	3.47279247068918	3.62622771738622	-0.507465073700709	0.366245122324995	0.751283584197618
Merged-chr15-84988079-4	chr15	84987585	84988585	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-114.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	7.35975156487879	7.30018574482088	6.99650808852962	7.40810637464889	7.33683211513819	6.90690464266557	0.013595201281366	0.959879343472576	0.99028728518054
Merged-chr9-78499292-3	chr9	78498787	78499787	+	638.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17563.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	3.763459788078	3.71791752321071	3.74115187152907	3.67922067987556	3.87851444287557	3.75912293692399	0.127173497299167	0.810341234934046	0.955030259072015
Merged-chr7-35555422-4	chr7	35554897	35555897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_033080, exon 1 of 3)	exon (NM_033080, exon 1 of 3)	531.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	8.39813207654968	8.83177966934262	8.21143354058125	8.48127696162286	8.51993150048458	8.2536753313733	-0.121838959518573	0.629345654012375	0.894177193823197
Merged-chr16-23290449-4	chr16	23289965	23290965	+	946.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252506)	promoter-TSS (NM_001252506)	-5.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.90984671000059	3.88272377692698	4.02221067613956	3.87923165461015	3.73115663664322	4.2185808002815	0.0347209618990725	0.947539379650633	0.988008807662239
Merged-chr4-126131928-4	chr4	126131487	126132487	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16016.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	7.03423570148564	7.05698786326151	7.22079921272783	7.1069478214296	7.4193214498409	7.01279868947553	0.150843235708886	0.55574720823603	0.86336352388685
Merged-chr9-32487588-3	chr9	32487114	32488114	+	727.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	53838.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.71260962960258	3.74834444068138	4.04245706549051	4.18169106333837	3.59461066018129	3.76694978955737	0.110771825090694	0.846039896052671	0.963949453265197
Merged-chr4-116177619-2	chr4	116177119	116178119	+	853.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4247.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	5.7528454168705	5.57547245226009	6.0240870746167	5.55052933755215	5.7370886690326	6.14467770155745	0.0670925850590243	0.848117723406543	0.964318271116593
Merged-chr6-15715195-4	chr6	15714691	15715691	+	963.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5470.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.27731954855597	4.33220968679428	4.46966797055073	4.24498770195026	4.41475253203223	4.32357215243951	-0.0597645485114673	0.893773524398731	0.975280227461205
Merged-chr16-31945293-2	chr16	31944793	31945793	+	968.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_172822, exon 3 of 3)	exon (NM_172822, exon 3 of 3)	3228.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	2.62168785389018	2.33740721089508	2.61245752684678	2.54621310595538	2.43553059835275	2.80578972173064	0.407389487860697	0.619565516021254	1
Merged-chr18-84849551-2	chr18	84849051	84850051	+	990.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1MD2|LINE|L1	-1787.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	6.3965370759816	6.49241649315719	6.28136729167786	5.90494523245039	6.11185255260118	5.96786118363448	-0.66225427970107	0.0206330349887427	0.164747488277834
Merged-chr17-83397493-3	chr17	83396990	83397990	+	937.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46559.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	5.65182566612171	6.03200178101381	5.98421398152452	5.78771531640424	5.78964922391651	5.58900085924012	-0.298636837097089	0.355224658209236	0.742204031746537
Merged-chr6-71439423-2	chr6	71438923	71439923	+	923.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	1214.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	6.62816056757351	7.0300978002888	6.74698195093804	7.00660826581328	7.08318683649415	6.46909308666173	0.116849919894452	0.696556408620735	0.919511799366159
Merged-chr10-60003139-4	chr10	60002634	60003634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347451)	promoter-TSS (NM_001347451)	1.0	NM_001347451	52717.0	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	7.45537442430867	7.63934400492979	7.62651314358647	7.60960502561437	7.60093567031844	7.61848690428514	0.0498913267257471	0.821894288515143	0.958023303204974
Merged-chr5-64887236-4	chr5	64886735	64887735	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	45464.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	5.5287370246859	5.55805865190493	5.23361119468377	5.223406051505	5.56870217535551	5.12119128174551	-0.237530056506185	0.51984214769633	0.846048097455962
Merged-chr11-82535895-2	chr11	82535395	82536395	+	714.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-97458.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	2.29714561193827	2.26430581747282	2.59034293269453	2.20408758935391	2.41659651577149	2.2195041005912	-0.648286726547998	0.466234402032276	1
Merged-chr2-58715101-4	chr2	58714572	58715572	+	934.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289660, intron 1 of 7)	L1MA4A|LINE|L1	-40112.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	3.93683053621366	3.7215118472874	3.80034135492974	3.95999828930636	4.16170577481422	3.87123856980613	0.577188623628102	0.26641858136378	0.664166899200562
Merged-chr1-88245619-2	chr1	88245119	88246119	+	854.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281466, intron 23 of 41)	intron (NM_001281466, intron 23 of 41)	18599.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	3.38725461715899	3.55166308366528	3.60959294667006	3.4562317710597	3.21078742103486	3.46956941310684	-0.525727055927123	0.381298266154179	0.763080052613635
Merged-chr12-51679942-1	chr12	51679442	51680442	+	807.0	f0_balb.idr	intron (NM_001172098, intron 1 of 15)	L1M4|LINE|L1	-11024.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	4.90494542350151	4.58077376216286	4.81188602962619	5.28781359779765	5.28304878099609	5.2625354513941	1.08633970135742	0.004094379646009	0.0528585853642981
Merged-chr15-82016268-4	chr15	82015764	82016764	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134095)	promoter-TSS (NM_134095)	-44.0	NM_001356541	28075.0	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	6.21491514778976	6.22292396890638	6.43752191656418	6.45523038346856	6.23871723763897	6.24924081607246	0.0503444101638776	0.857819754099224	0.966785186918462
Merged-chr3-142498446-2	chr3	142497946	142498946	+	632.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153564, intron 1 of 10)	(TATATG)n|Simple_repeat|Simple_repeat	1512.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	3.15507229020715	3.18657121517462	3.20928740885689	3.1122038552834	3.25504530948439	3.33568672022635	0.221588520194502	0.724006510335449	0.929178878081464
Merged-chr4-124802509-4	chr4	124802024	124803024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-25.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	7.54452774246461	7.69302498252147	7.61514097408217	7.52751090388781	7.89526641178765	7.73486217653276	0.162760346204587	0.486612430932057	0.82796652869956
Merged-chr11-61944352-2	chr11	61943852	61944852	+	727.833374	f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-12411.0	NM_001281818	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	2.89061792492106	3.18923857170226	3.10311739601986	2.86832911408701	3.2960169107838	3.11683030243852	0.185999522439432	0.79244297799197	0.949977808464961
Merged-chr11-69035419-2	chr11	69034919	69035919	+	584.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001281465, intron 20 of 22)	intron (NM_001281465, intron 20 of 22)	-10218.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	5.36488903415165	5.14909181119108	5.3300426820349	4.88768882875036	5.10119150261062	5.39270924294959	-0.302141564961714	0.421138330366943	0.790131900416752
Merged-chr10-127288002-2	chr10	127287502	127288502	+	847.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	1016.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	5.29763605437403	5.73774476215698	5.67463333910489	5.45997629892469	5.53077027159122	5.90341454762928	0.100250818799871	0.778518306358191	0.945520893795831
Merged-chr4-129783021-4	chr4	129782542	129783542	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-37437.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.3812456117364	7.31293773765849	7.48384522841457	6.99322342832851	7.13552168744899	7.1712403946439	-0.432532303955644	0.0655590489052042	0.33396606928966
Merged-chr7-132243070-4	chr7	132242563	132243563	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-72601.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	5.65385561169926	5.73681994433902	5.63232086848844	5.67066492451596	5.60323412089447	5.43071569075117	-0.183995593304161	0.564994005622082	0.866552670637515
Merged-chr7-116597118-4	chr7	116596618	116597618	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	92749.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	3.38107766801617	3.26734731062759	3.48290399771223	3.16824643015595	3.12274404796499	3.28369139730352	-0.770834638891489	0.215987565611148	0.60938198017674
Merged-chr5-65697918-4	chr5	65697385	65698385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-29.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	7.03373628332183	6.65309491750932	6.64629813822969	7.16985118756606	6.05613689777709	6.84550373256829	-0.0310843823946604	0.932051627523666	0.985035285260106
Merged-chr17-80727632-4	chr17	80727166	80728166	+	951.229126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360278, intron 1 of 33)	CpG	359.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	6.06574112591833	5.91131771738251	5.6943909807109	5.8639481469138	5.48734883217203	5.78341765635262	-0.348485552016134	0.288771419966838	0.686124851873233
Merged-chr15-26361903-4	chr15	26361414	26362414	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	52866.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	5.7866786278263	5.90173646097484	5.8222876728797	5.86285344801788	6.13950748656531	5.90880442869534	0.256505976609815	0.398691156780012	0.775353942255673
Merged-chr4-132097263-2	chr4	132096763	132097763	+	578.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21950.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	2.49328577802991	2.75906441518168	2.74595170440029	2.81059058135762	2.61931966631802	2.87925083704576	0.52699684050283	0.491647208326099	0.830622340874258
Merged-chr3-153260797-4	chr3	153260310	153261310	+	940.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	37839.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	6.25978814351591	6.45515843606458	6.32084162980907	6.51139572851037	6.37822560514878	6.59536731584613	0.23033808567426	0.398228741624154	0.774939402456313
Merged-chr19-34524857-6	chr19	34524409	34525409	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	2565.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	8.24583796217461	8.02666350291714	7.56809007820645	8.27771493572768	8.21781076611424	7.67539713721263	0.149855039030818	0.603385579378727	0.882544198306255
Merged-chr17-81705407-4	chr17	81704874	81705874	+	890.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33013.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	6.49093171683538	6.35585559342054	6.55468177338203	6.31678914832846	6.46294655216589	6.36267115055955	-0.128391369523953	0.634004755298942	0.896247399650521
Merged-chr15-9572064-4	chr15	9571574	9572574	+	879.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42198.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	3.58149286778728	3.60140444260795	3.9200703060647	3.73562366478288	3.52281235714131	4.03224662208003	0.224762793569331	0.696432384464162	0.919456498952701
Merged-chr7-80802823-1	chr7	80802323	80803323	+	1000.0	f0_balb.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	508.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	8.22856232662187	8.27747278166025	7.98625535842278	7.97731019148356	8.21955049185723	8.07909404555804	-0.108317371318645	0.626727352319749	0.892916235446326
Merged-chr4-42879800-3	chr4	42879297	42880297	+	998.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-5563.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	5.02979375555029	5.0066931259082	5.48776473550402	4.47564107065532	4.59575786541688	4.89527199220939	-1.16206551630551	0.00605755821916096	0.0702588938249157
Merged-chr5-43867410-4	chr5	43866895	43867895	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx3B|LINE|L1	-1414.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	7.79685768222663	7.85257423430474	7.87685079798906	7.98331238239194	7.98827562020509	7.75773136560175	0.111754022418658	0.607400522248464	0.884581207370863
Merged-chr9-99496019-1	chr9	99495519	99496519	+	581.0	f0_balb.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	25598.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	4.65229106067929	5.33894871949426	5.04770103304479	4.99723461331823	4.992723947584	4.85633441611659	-0.203205759384025	0.628606756685348	0.893783616313365
Merged-chr8-13648584-4	chr8	13648085	13649085	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	(TTCCC)n|Simple_repeat|Simple_repeat	29002.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.83686385022149	7.72383495263154	7.55583212959914	7.62777377261212	7.74008213170895	7.30695905539875	-0.194761782221425	0.428643319714478	0.795420465213011
Merged-chr2-25196825-4	chr2	25196346	25197346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-33.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	7.26211556810326	7.08904049449392	7.63321496782607	7.50210458604329	7.95126177487599	7.74194085570906	0.594682302663903	0.0279170109025917	0.199546314163976
Merged-chr5-28037386-4	chr5	28036883	28037883	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34029.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	7.61944765329037	7.91953989277303	7.55995740776178	7.62949482305974	7.91992499107096	7.39359209911077	-0.055728923909822	0.831074144674574	0.96040466966768
Merged-chr5-150156221-4	chr5	150155720	150156720	+	794.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-103710.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.62402411890014	2.6794605180155	2.89775940179681	2.82967450740305	2.51116569011935	2.60162579972765	-0.436368234914644	0.574359349906591	0.870626360137497
Merged-chr15-25376523-2	chr15	25376023	25377023	+	548.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	37241.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.44624618100375	3.66667515937516	3.58169480357963	3.7545439848811	3.6407139601793	3.59819858023463	0.342370106532661	0.540098463328728	0.856319360692709
Merged-chr11-96915575-2	chr11	96915075	96916075	+	801.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_030248, intron 2 of 13)	B1_Mur2|SINE|Alu	939.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	3.45434123371725	3.70762037049133	4.12325904171684	3.76788197521443	3.84357633941499	3.77554904772924	0.0469142353214189	0.93555554822297	0.985869643214979
Merged-chr8-34876789-2	chr8	34876270	34877270	+	693.5	f0_balb.idr|f1_c57bl6.idr	intron (NM_175091, intron 5 of 26)	MTE2a|LTR|ERVL-MaLR	69160.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.68103555277096	3.64852471296306	3.57257656061588	3.50691170880384	3.14098989789592	3.23879295159916	-1.27294642114008	0.0403040808580707	0.250046373399817
Merged-chr3-27233854-4	chr3	27233323	27234323	+	878.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	50819.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	5.28872901800982	5.09709505389673	5.00037363315769	5.14025294986259	5.38957211795895	5.33520920120017	0.311413700725946	0.390418276711756	0.76958978415218
Merged-chr9-67043955-4	chr9	67043449	67044449	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164254)	promoter-TSS (NM_001164254)	-78.0	NM_001164256	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	5.19843601651007	5.42294852259435	5.27687084473638	5.11006028784472	4.79024070218565	4.84848420579863	-0.801913080085163	0.0328616420551879	0.220904145429639
Merged-chr11-108248513-4	chr11	108248005	108249005	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	95383.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.09418999118117	4.85210024726318	4.80910364570029	5.42052256979531	5.07771497219036	4.83580340555431	0.445013426558692	0.27224269233134	0.669566385182848
Merged-chr11-115278036-3	chr11	115277550	115278550	+	796.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1081.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	6.95421320690273	7.37154402584672	7.04216910920168	7.41280328917334	7.74468271483961	6.86318234659015	0.390183260222245	0.211703086981248	0.604073607267779
Merged-chr17-23809106-2	chr17	23808606	23809606	+	690.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175229, intron 3 of 13)	B1_Mus2|SINE|Alu	5919.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	3.01076734366768	3.50854714029482	3.44161248664036	3.30310960088753	3.15433716926334	3.35003500314211	-0.277730411539193	0.674909746215869	0.911890915873117
Merged-chr19-5639258-2	chr19	5638758	5639758	+	596.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_009045, intron 4 of 10)	intron (NM_009045, intron 4 of 10)	1768.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	3.81905631022738	3.92831469460928	4.3144843371321	4.08832947799566	3.94005671391373	4.21388199376236	0.151787370517594	0.769439763715632	0.943125565788486
Merged-chr2-14222295-2	chr2	14221795	14222795	+	557.166687	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001081310)	TTS (NM_001081310)	-7119.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	2.4988167032963	2.51209297257138	2.54413840594256	2.27800341861103	2.43236138194967	2.22136880795809	-1.27755957074072	0.147245944873472	1
Merged-chr16-44760358-4	chr16	44759858	44760858	+	952.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5378.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	5.42944663405283	5.51189081435851	5.54416620986496	5.34738255525896	5.42643168623887	5.4348178154019	-0.174213962611578	0.596012606010951	0.879792384483656
Merged-chr18-50098003-1	chr18	50097503	50098503	+	680.0	f1_c57bl6.idr	Intergenic	Intergenic	-30198.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	5.1082829753712	4.73697924337338	5.02896556947538	5.48426006931645	5.53865428797207	5.68910641331301	1.21750126660726	0.000837865173782495	0.0156796343606917
Merged-chr8-83055073-4	chr8	83054543	83055543	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-110309.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	6.07215622166913	6.39430396164669	6.487473852001	6.27373272725257	6.07435741931919	6.03153054263282	-0.320616706601473	0.283926708434229	0.681561710048042
Merged-chr2-144237522-4	chr2	144237059	144238059	+	878.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mm|SINE|Alu	28643.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	2.71786409051505	2.6457399611695	2.99671767283354	2.84128890600488	2.82078390469731	2.8345915702903	0.221968864649661	0.761108135102891	0.941142869178598
Merged-chr14-55794063-4	chr14	55793552	55794552	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5195.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	6.808310208397	6.77823184913072	6.92864788868354	6.9743193353204	7.18716515336732	6.41510959647747	0.117763244311284	0.694838047407478	0.919217788511748
Merged-chr19-41848295-4	chr19	41847804	41848804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177603)	promoter-TSS (NM_177603)	-172.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	6.64533672026269	6.54385021768852	6.19748406596435	6.81458905951632	6.55404167963442	6.09438271033469	0.0743082182452999	0.818066438171277	0.956842917576288
Merged-chr2-122148730-4	chr2	122148236	122149236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	1049.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	7.97261138679927	8.10920627228976	7.44717401019311	8.20749702612072	8.51588922966636	7.95119838900905	0.521636718451215	0.0645116242757865	0.331042074759191
Merged-chr15-103365607-5	chr15	103365132	103366132	+	854.2333369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	1159.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	5.32974222348914	5.04239080907398	5.75587884273758	5.39366665162197	5.21661930033242	5.54444264113742	-0.0239551403350157	0.950867056178039	0.98851127513721
Merged-chr12-117518100-2	chr12	117517600	117518600	+	775.75	f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_175930, exon 2 of 28)	5' UTR (NM_175930, exon 2 of 28)	1621.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.98263349418557	5.94387797521044	6.42157295589493	6.87514750681843	7.00005144673362	6.38662117050503	1.08058224431175	0.000656370484971654	0.0130253458892252
Merged-chr6-52491440-3	chr6	52490973	52491973	+	941.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_046049)	promoter-TSS (NR_046049)	-978.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	4.61838197146084	4.58949201555747	4.66352947905303	4.53366460108986	4.15598020072368	4.57218150737572	-0.498427682359241	0.262207521266601	0.660046527994061
Merged-chr6-53993511-3	chr6	53993014	53994014	+	778.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	14823.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	2.45811309579593	2.54756931669212	2.31327447049796	2.56373907018131	2.61951067673416	2.6530945552373	0.969377198400646	0.238839126590623	1
Merged-chr9-62980426-1	chr9	62979926	62980926	+	1000.0	f0_c57.idr	intron (NM_019663, intron 1 of 13)	CpG	453.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	7.8462662861367	7.7838707923009	7.68304106535062	7.77231038966627	7.6629601874042	7.67584708687	-0.103355800806275	0.634322771959753	0.896320504181421
Merged-chr3-89280141-1	chr3	89279641	89280641	+	704.0	f0_balb.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-496.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	4.9230038188418	4.89089910068043	4.78322359824113	4.86001494080477	4.54708457564145	4.64799178132644	-0.418404557027198	0.299520651421282	0.696302212307361
Merged-chr5-121378014-2	chr5	121377514	121378514	+	738.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359947, intron 5 of 11)	intron (NM_001359947, intron 5 of 11)	7395.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.51523797081843	2.51008484645469	2.88726261804323	2.39142630362933	2.40516163827118	2.61882482568937	-1.04376604882899	0.207846718620501	1
Merged-chr7-123130320-2	chr7	123129820	123130820	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144925, intron 2 of 23)	intron (NM_144925, intron 2 of 23)	6435.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	3.47657601121641	3.25500774632069	3.45534733077744	3.40648284824658	3.21597417183579	3.47229453830929	-0.13230527935191	0.827955606633961	0.959599544757826
Merged-chr11-94585961-3	chr11	94585457	94586457	+	963.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	B3|SINE|B2	15829.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	3.94841350792832	3.64133630721277	3.6839103434251	3.96522525918129	4.06341124590713	3.64211319712783	0.446639909860778	0.422775134668836	0.791536876572791
Merged-chr5-143424074-4	chr5	143423578	143424578	+	977.541626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20258.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	3.04007104914664	2.84168457464551	3.01706708576435	2.95713207590606	2.57296269146869	2.9723374318948	-0.60711265145955	0.421837542283936	0.790756682370678
Merged-chr2-33353638-4	chr2	33353136	33354136	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	17858.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	3.88467631789882	3.44042486816366	3.64289682389583	3.32362888780355	3.53755468081029	3.12169088970653	-1.17921938361214	0.0792157464551771	0.372058242890177
Merged-chr9-103208027-4	chr9	103207536	103208536	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_133977)	TTS (NM_133977)	-5971.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	4.15911551755343	4.26837199280186	4.2983567513776	4.0546963660025	4.12870953146005	3.99245802595308	-0.497526264185546	0.294193307570751	0.690840343634562
Merged-chr1-180568913-4	chr1	180568405	180569405	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007415)	promoter-TSS (NM_007415)	14.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	4.8611876415434	4.88647799019245	5.06568471224679	4.8825587835134	4.98664788501355	4.72674183362642	-0.120424246243301	0.756831714131843	0.939706830851039
Merged-chr5-96914793-3	chr5	96914295	96915295	+	933.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6477.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.29694439769732	4.06912884244993	4.56499541836916	3.64647747714292	3.51569425464703	4.1126553081578	-1.65090315572144	0.00398857168572806	0.051821267768272
Merged-chr10-127324707-4	chr10	127324209	127325209	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-933.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	4.8392141121005	4.30080652184085	5.05177927208124	5.10191030117512	5.13145010038349	5.14823676301001	0.802750013350523	0.0657510777008686	0.334577768672571
Merged-chr6-122576464-3	chr6	122575957	122576957	+	878.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	22648.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	5.90939032795281	5.77399041243844	5.68533057967197	5.66835404250125	5.32220918073568	6.00900288061824	-0.208130559375056	0.556488971392615	0.863603167403937
Merged-chr1-134782879-1	chr1	134782379	134783379	+	560.0	f0_balb.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	20842.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	2.51526438103218	2.3680622073695	2.40377516665415	2.5436493744982	2.49024347433298	3.02143347488689	1.54067404490613	0.0686655158851215	0.34288664980911
Merged-chr4-53111402-2	chr4	53110902	53111902	+	923.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	48493.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.91403604083434	4.56129929484424	4.80370332343224	5.26043725896687	5.14453879416343	4.94700035242548	0.790089193553494	0.0456729411180427	0.269892343196513
Merged-chr15-36935397-3	chr15	36934884	36935884	+	911.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	72018.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	2.84619951769716	2.73583576912101	3.25671504007189	2.89440431548314	2.86273015305009	2.99964850756079	-0.191856703693488	0.792711408327818	0.950032655975256
Merged-chr1-173802056-1	chr1	173801556	173802556	+	780.666687	f1_balb.idr	Intergenic	Intergenic	-35137.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	5.39027220172039	6.05674534589774	5.17068428898711	6.1801993748769	6.32785090049426	5.7922435355457	0.898410938509977	0.0267941913233421	0.19486854922058
Merged-chr5-113611766-2	chr5	113611266	113612266	+	759.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_001359060)	TTS (NM_001359060)	31837.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	2.8950956710636	2.62438820686365	2.89182935244787	2.59546055936221	2.44587025090186	3.02074577903788	-0.514730465413939	0.531086075463365	0.851391225476952
Merged-chr8-103919533-3	chr8	103919040	103920040	+	761.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-182085.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.07036819629653	2.90785127628388	3.051561739933	2.95014605081576	2.8767242625734	2.82011926708765	-0.605754173500912	0.381716174817525	0.763340610786527
Merged-chr9-103182115-2	chr9	103181615	103182615	+	660.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_173781, exon 8 of 8)	3' UTR (NM_173781, exon 8 of 8)	19950.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	2.03788356495136	2.18621944676916	2.06116342582344	2.25515027714927	2.084089860121	2.33692132560516	0.917040136660773	0.313960516185038	1
Merged-chr4-149792443-4	chr4	149791928	149792928	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18161.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.85263168308984	7.81314738287876	7.38587107275485	7.62722191478465	8.06767263321649	7.36165104717474	0.0333791354711757	0.907816342288911	0.979049462233659
Merged-chr6-39056104-4	chr6	39055623	39056623	+	678.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	11463.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	4.54656119488404	4.33130543620953	4.13511377721038	4.53620882913984	4.01735928954831	4.30162594252821	-0.14674224466494	0.767226991750535	0.942573703853445
Merged-chr6-83054583-4	chr6	83054087	83055087	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-16.0	NM_019752	64704.0	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	8.64065228567239	8.69061880479827	8.17551032715792	8.44686281400168	8.59786324568743	7.96613926381897	-0.216692715238923	0.423866708358411	0.792272050905538
Merged-chr11-32619682-4	chr11	32619188	32620188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22867.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.64858520240563	3.55932375015176	3.53473593374392	3.91035361033623	3.89113057553884	3.66388544995969	0.83156271283761	0.128599463449058	0.479725368402892
Merged-chr13-9022808-4	chr13	9022307	9023307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-26795.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	2.92727131581268	2.75728441498335	3.01423045430185	2.71805989979634	2.64740935262856	2.91349365538097	-0.727484023617299	0.321661958142866	0.715092425535113
Merged-chr11-118226176-2	chr11	118225676	118226676	+	710.041626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-13434.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.04660458286964	4.92770668615337	5.17739444547528	5.02905108373222	5.08991207302549	4.96966651027531	-0.0245671955889819	0.947074057870878	0.988008807662239
Merged-chr1-138157888-2	chr1	138157388	138158388	+	711.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	17238.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	6.7998968644593	6.84553775699678	6.76433711369059	6.54943194041757	6.88108481697288	6.68013793959462	-0.136397704306928	0.601013257778466	0.881855262262798
Merged-chr10-13560453-4	chr10	13559919	13560919	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025748, intron 3 of 5)	intron (NM_025748, intron 3 of 5)	-7277.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	5.25450132461182	5.26768305587032	4.93787840078534	5.00031669236977	5.22567112725132	5.3117714428568	0.0210297672932562	0.955036352963183	0.989683851514547
Merged-chr1-151818826-2	chr1	151818326	151819326	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	63452.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	7.22313898544639	7.34688391798191	7.04750638714488	7.15413211440194	7.47708775341237	7.44554256513613	0.222210769320387	0.374123135084635	0.757882844166094
Merged-chr10-117818758-4	chr10	117818206	117819206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	-26001.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	6.71341146332333	6.77112289421858	6.67851589258965	6.5522687635009	6.57711310893345	6.38097748538571	-0.333925521336542	0.197308349477551	0.585298864289769
Merged-chr1-134305275-3	chr1	134304792	134305792	+	851.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	15288.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	6.33957927952591	6.54150812152799	6.53972257671	6.19623621109979	6.17056834316904	6.53173629459962	-0.288707837769944	0.311846542323889	0.706725326661025
Merged-chr4-132748932-4	chr4	132748451	132749451	+	990.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	8220.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	5.16881863106862	4.9741819926863	5.26144866392386	5.26910325022693	5.14709033060458	4.98630851338505	0.024301087925444	0.947507279984476	0.988008807662239
Merged-chr11-95712170-4	chr11	95711624	95712624	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045780, intron 1 of 1)	intron (NR_045780, intron 1 of 1)	630.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	6.66116150231415	6.63601765771444	6.766948159254	6.61107783847294	6.74138666249009	6.68581418228847	-0.00364364502395079	0.988534973907663	0.997426973334006
Merged-chr9-120011742-4	chr9	120011218	120012218	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2b|LINE|L2	11880.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	6.08892512073096	6.10239960295814	6.22341921458538	5.57524919630781	5.15290598573743	5.47020409250891	-1.33987992418969	4.21023136573877e-05	0.00136845676359528
Merged-chr2-150872798-3	chr2	150872308	150873308	+	695.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-30238.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	4.93701379790791	4.94895857291173	5.07333303531521	4.48528152582203	5.05214500358397	4.65515898215148	-0.475866680843525	0.266037939503359	0.663824402864358
Merged-chr6-29528038-8	chr6	29527567	29528567	+	985.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311083, intron 1 of 9)	intron (NM_001311083, intron 1 of 9)	-1215.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	7.944590291386	7.77877106061724	7.90204816813467	8.11313761537527	8.25300597266589	8.1931975213996	0.443590885172651	0.0360450700795842	0.233458254159107
Merged-chr8-25600780-2	chr8	25600280	25601280	+	711.666687	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001308481)	promoter-TSS (NM_001308481)	-821.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	7.21688948002866	7.34552768395787	7.11191882533418	7.05562937051655	7.64616926087188	7.29172065460335	0.19442352558758	0.472756502107178	0.820550293768681
Merged-chr1-74439696-4	chr1	74439201	74440201	+	975.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176972, intron 25 of 25)	intron (NM_176972, intron 25 of 25)	30317.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	5.63660341219526	5.83909385253006	5.55120850962026	5.17104777901306	5.04331993792758	5.21374438881652	-1.07818979835147	0.00163571118986215	0.0264639814672468
Merged-chr1-86415612-2	chr1	86415112	86416112	+	765.099976	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10717.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	3.40258945040461	3.28986144395107	3.49204765562336	3.36229186440008	3.51239630800686	3.50905938996233	0.268945835612175	0.647746487136635	0.901510214793849
Merged-chr8-72492045-8	chr8	72491580	72492580	+	821.03125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177766, intron 1 of 5)	CpG	534.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	6.56028903377722	6.10851718788708	6.12071249401714	6.58556769640984	6.27381985619651	6.13650868860089	0.102534782221013	0.745424168914102	0.936173729088124
Merged-chr17-50438667-1	chr17	50438167	50439167	+	1000.0	f0_balb.idr	Intergenic	Intergenic	-70880.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	5.12681672181841	5.0025392588796	4.59979979735012	4.53526065834535	4.42370689360427	4.34265830968669	-1.18077200590576	0.0067947540578189	0.0764540764899249
Merged-chr15-99812449-2	chr15	99811949	99812949	+	607.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	7700.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	2.51064992287894	2.5207943721613	2.89294517402417	2.9600160076061	2.6955027974723	2.90733506128039	1.11192509882194	0.157185327641462	0.528212783909808
Merged-chr6-122653874-4	chr6	122653369	122654369	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27445.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	7.89865447266919	7.59591975191852	7.74969309038668	7.94849493428976	8.1015346682465	7.88133548876382	0.329331313640322	0.147984277181067	0.513296749997173
Merged-chr1-152580227-2	chr1	152579727	152580727	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	44990.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.95145175147507	5.61735753133173	5.62006198313176	5.91996529192772	5.96103504982646	5.50273585719731	0.140071970670952	0.68005855699223	0.914139397449033
Merged-chr15-83147930-2	chr15	83147430	83148430	+	951.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	1448.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	5.6871277391022	5.5909020694418	6.10816615833068	5.737996027221	5.73239001769863	5.98023336805822	0.024109210030908	0.942601611195914	0.987202156853573
Merged-chr5-74628003-4	chr5	74627488	74628488	+	906.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359074, intron 2 of 10)	intron (NM_001359074, intron 2 of 10)	49884.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.03739061286408	2.98373811364263	3.16552900230895	2.90852534143151	2.68199357856717	3.29003131612044	-0.371866506852978	0.616476686806268	0.888381733194521
Merged-chr1-172026734-1	chr1	172026234	172027234	+	619.0	f1_c57bl6.idr	intron (NM_033509, intron 1 of 7)	intron (NM_033509, intron 1 of 7)	561.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	3.10008845528637	3.04002304903304	3.02512774420391	2.83397179601922	2.68511063541719	2.79034081203247	-1.47807545208148	0.0401528609935229	0.249461603639891
Merged-chr18-61086384-4	chr18	61085890	61086890	+	981.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-19182.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	6.35413478804379	6.45522356406486	6.3893896519023	6.61084998221216	6.56482992031493	6.57489554070554	0.293595926376836	0.259247416441872	0.656825376873982
Merged-chr1-85593207-3	chr1	85592679	85593679	+	811.333313	f0_balb.idr|f1_balb.idr	intron (NM_030194, intron 3 of 11)	intron (NM_030194, intron 3 of 11)	5631.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	4.99196448751041	4.7257673918009	4.96910266966131	3.62583285481837	3.43593062411055	4.90685924172184	-1.50349795027616	0.432616091551824	0.797386699146392
Merged-chr2-32961704-4	chr2	32961201	32962201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	-11.0	NM_009076	269261.0	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	7.72790135966632	7.75507195506923	7.35242586919347	7.41199700958352	7.44593340493635	6.85181898342211	-0.520089500004543	0.0650054777436918	0.332512189838145
Merged-chr4-83512409-4	chr4	83511880	83512880	+	879.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-13165.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	2.74301067003867	2.7036195913627	2.85005831650417	3.03091368105406	2.74257332061511	2.98305710443884	0.791752482831606	0.27243679260318	0.669667680095874
Merged-chr12-35053055-1	chr12	35052555	35053555	+	747.0	f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	5866.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	4.52209526474813	4.50859160598064	4.68798126960184	4.92671232046663	4.71977595694638	4.36272096002047	0.307211708313339	0.484296886461397	0.826783818659961
Merged-chr9-90303357-4	chr9	90302846	90303846	+	996.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-32577.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.35513854132592	4.50601231430073	4.52452867542684	4.77631086846901	4.443173045349	4.70937259275989	0.451418020273042	0.296501749115666	0.693171366955017
Merged-chr6-16863132-5	chr6	16862652	16863652	+	816.466675	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031198, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	35289.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	4.84301376201159	4.90888474099107	4.99494448533023	4.86995474708922	4.84610375059358	4.54932833759006	-0.313085709492084	0.43343874241335	0.797815674529737
Merged-chr7-31059332-4	chr7	31058858	31059858	+	927.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-577.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	2.97895239964616	2.73050767890489	2.89551384970751	2.84022537414317	2.50086268516059	2.58677535763977	-1.18905129627845	0.132749776709579	0.487573398773929
Merged-chr3-96246697-3	chr3	96246206	96247206	+	957.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178216).2	promoter-TSS (NM_178216).2	6.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	2.80746587640952	2.78012553856912	2.99012238014603	3.93808949428101	3.92759172861156	3.78401482578291	7.28381617948223	9.66351943450460e-09	8.75906454364116e-07
Merged-chr7-25682948-2	chr7	25682448	25683448	+	632.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172148, intron 1 of 2)	B1_Mur4|SINE|Alu	1790.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	5.25650243359699	5.33231973053658	5.53838375708463	5.66810524842806	5.68662359576668	5.78236611836202	0.642442231540619	0.0494593336570764	0.282787894931493
Merged-chr2-129595790-1	chr2	129595290	129596290	+	1000.0	f0_balb.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	328.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	8.95260716814201	9.02483443549289	8.75277087797906	8.58414840613288	9.10487376816293	8.47736593046663	-0.214527349812984	0.396894024310354	0.773812221163503
Merged-chr12-17692153-4	chr12	17691579	17692579	+	942.2666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	1270.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.76079909941046	6.87598227917559	6.96449599788403	7.28444307624702	7.1937589874639	7.47944249726132	0.685426883536628	0.00546125908996765	0.0652153338630925
Merged-chr15-33211578-4	chr15	33211059	33212059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	128430.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	6.72828525173743	6.73320284136468	6.4101423020132	7.04422474962229	7.15220870228775	6.62189805935312	0.510036704218629	0.0748946528555498	0.360241185372864
Merged-chr4-35223208-4	chr4	35222708	35223708	+	978.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2672.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	7.23178293969343	7.31893315854129	6.99155650322293	7.64824017717817	7.83005342082417	7.39115936319604	0.658255436993546	0.00978316729841227	0.0989711592177858
Merged-chr2-127789394-2	chr2	127788894	127789894	+	551.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-503.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	5.85055058797893	6.01879279326284	5.46425026908924	5.6965084157654	6.11908013837677	5.36072617742399	-0.0498762135051344	0.896465257927705	0.975838835430135
Merged-chr7-109985274-1	chr7	109984774	109985774	+	545.0	f1_c57bl6.idr	intron (NM_153525, intron 1 of 6)	B1_Mus1|SINE|Alu	956.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	3.5260757957451	3.46111507626398	3.34237474427858	3.25012634737902	3.54686501827175	3.57890935170473	0.0662937909828338	0.912474792298593	0.980363124210176
Merged-chr7-102013599-2	chr7	102013099	102014099	+	791.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_133947, exon 23 of 25)	exon (NM_133947, exon 23 of 25)	4556.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	4.66057703911116	4.6034448995438	5.08379211636394	4.61875426091263	4.52239646414618	5.11623409514299	-0.0524647871553071	0.907942188878017	0.979071516420527
Merged-chr10-42278177-2	chr10	42277678	42278678	+	1000.0	f0_balb.idr|f0_c57.idr	Intergenic	CpG-1005	-1436.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	7.91037064190842	7.7518626122332	7.67414374179101	7.76434441025663	7.5539808630854	7.11754403803455	-0.390591917915528	0.140056510873576	0.500144629900091
Merged-chr16-35802304-4	chr16	35801778	35802778	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_152314, intron 3 of 8)	intron (NR_152314, intron 3 of 8)	31892.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	4.32015362729132	4.21611756493527	4.37481315529708	4.83041193701187	4.50841889064295	4.48708857788067	0.805182645400126	0.0691479857258846	0.344038279792654
Merged-chr5-65199579-4	chr5	65199059	65200059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-137.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	6.84159018555655	6.97158697235277	6.76646949817625	6.68598506630912	6.69359760482004	6.36238443385447	-0.417632377163773	0.117885926062882	0.458538338436812
Merged-chr13-24614582-4	chr13	24614111	24615111	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	5.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.17829238947998	4.19721645340371	4.2349768990348	4.26396419556309	4.09558534452941	4.11667258390778	-0.116949116573478	0.80158283565619	0.952995299515894
Merged-chr4-53120549-4	chr4	53120033	53121033	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	39362.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.99711605858138	7.91233135548941	7.59799967908559	7.97079026475849	8.06622240938583	7.72148674582467	0.113634587089415	0.63891176674121	0.897847437626511
Merged-chr12-112648174-3	chr12	112647638	112648638	+	861.25	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013929, intron 3 of 3)	intron (NM_013929, intron 3 of 3)	3310.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	2.80075837553944	2.56659638185901	2.53820650651725	2.80170846221158	2.61207443201743	2.92663205666745	0.732763518607334	0.347784106423373	0.735747481116546
Merged-chr7-104219372-4	chr7	104218840	104219840	+	796.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013616, intron 1 of 7)	intron (NM_001013616, intron 1 of 7)	545.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	3.88798849539303	4.2379863056144	3.86594001624952	4.18840624162645	4.38738235846415	4.37018117185759	0.834179094826754	0.096330182508578	0.413764290015164
Merged-chr13-114818192-4	chr13	114817640	114818640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-97.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	7.2259718506611	7.59897850956475	6.82605889110737	7.47171735380818	7.55502485800427	6.8016088115422	0.0918347991447299	0.780786297481456	0.946078518476608
Merged-chr8-71476665-5	chr8	71476172	71477172	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001294259)	TTS (NM_001294259)	7478.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	6.32760849408696	5.52725328290311	6.1224099138262	6.0860121044687	5.26955191977844	6.18272603894142	-0.227815560228508	0.586756804971524	0.875655897836385
Merged-chr5-96997510-4	chr5	96997007	96998007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-182.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	8.36452459289818	8.60333090923692	8.02562290194115	8.36700633209876	8.07089539349245	7.95672125634461	-0.298882965462018	0.243771018467756	0.640915663064491
Merged-chr8-46952872-2	chr8	46952372	46953372	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34015.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	4.61579603570987	5.00228460251771	5.07156308222505	4.98134664842835	5.05712545111802	4.73050179188398	0.0725866748010777	0.85986586518575	0.967435965660262
Merged-chr15-53289004-3	chr15	53288510	53289510	+	839.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	57173.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.525399938608	2.69936287614106	2.71364676911242	2.67770523962095	2.50922269783324	2.53364493901308	-0.409889386011953	0.596385333857063	1
Merged-chr10-85184480-4	chr10	85183999	85184999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_007771, exon 1 of 13)	5' UTR (NM_007771, exon 1 of 13)	555.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	7.9603410446504	7.88607807275578	7.22818021620838	7.91455488054856	7.59215163454473	7.28576703300723	-0.160841371263503	0.596669865101018	0.880028824009598
Merged-chr14-103478158-4	chr14	103477651	103478651	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-35190.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	6.40166827050625	6.6066275448445	6.53510749276384	6.66702293369818	6.89647279744975	6.90473893764828	0.489276497816769	0.0626291448122509	0.325483233030526
Merged-chr1-23466389-4	chr1	23465912	23466912	+	837.958313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-83237.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	4.55186834107098	4.90259165845359	4.47098647503302	4.67743560117465	4.65634368259003	4.78620616362171	0.0865218621031733	0.839414541031851	0.962784121274377
Merged-chr2-11425915-3	chr2	11425321	11426321	+	820.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27321.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	3.280688261144	3.5428893444545	3.4535229310105	3.58037376948165	3.24357366977016	3.1750676873855	-0.321020185031277	0.613985943168868	0.887338990172734
Merged-chr11-6311031-1	chr11	6310531	6311531	+	551.0	f1_c57bl6.idr	intron (NM_010956, intron 2 of 22)	intron (NM_010956, intron 2 of 22)	18452.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	2.36463820774224	2.3338675280761	2.39419243113965	2.50899750905646	2.49492348470991	2.65794878729638	1.18575100311989	0.14251032779875	1
Merged-chr4-24619897-4	chr4	24619406	24620406	+	972.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355618, intron 9 of 9)	RMER15|LTR|ERVL	123455.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	4.29913283623635	4.14830347323613	4.50830645643248	4.37959096779982	4.54066157052556	4.89806956816374	0.748791605169468	0.106679177051578	0.435916169724877
Merged-chr2-131160146-4	chr2	131159664	131160664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-83.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	7.83002726883463	7.98925239171632	7.36848453761912	7.47297949381176	7.54582695502749	7.00806937190894	-0.567138003126135	0.0483809744259704	0.278960856492007
Merged-chr18-20750422-3	chr18	20749929	20750929	+	883.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR10_RN|LTR|ERVK	-4025.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	5.04005588055586	4.86382599040527	4.64002658219529	5.07081166164009	4.72466020292466	4.48003934647686	-0.17389935454023	0.691061563721569	0.91812801462051
Merged-chr15-89181926-4	chr15	89181368	89182368	+	876.591675	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_027081)	TTS (NM_027081)	-1080.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	5.89566343753365	5.79137638113912	5.96680691624852	5.83252488688448	5.82306511129897	6.1345230897137	0.0808879435592083	0.792316031849599	0.949929758256028
Merged-chr17-73971086-3	chr17	73970572	73971572	+	868.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20876.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	6.3886998007092	6.64343072987303	6.37135823024339	6.54697583889417	6.60219466660013	6.69318158608966	0.211288009258637	0.433028610362597	0.79758551656855
Merged-chr4-8913773-2	chr4	8913273	8914273	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	162449.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.57603100836353	6.73581456639711	6.81261170249803	7.02109546518263	7.20767338370783	7.40426847095807	0.778919484325179	0.00259727088701577	0.0377491206928923
Merged-chr7-29493048-2	chr7	29492548	29493548	+	574.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	12412.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	2.71191439610943	2.84078799110006	2.76735236596255	3.28835888483761	2.75667371198275	3.03153558955662	1.28519915185153	0.0859958980803251	0.388266185001677
Merged-chr11-50226568-2	chr11	50226068	50227068	+	799.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	1233.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	6.19390003442062	6.38924830841737	6.54973104119806	6.22688469652994	6.29694667128675	6.11215802298014	-0.261051459193461	0.361870440248509	0.747511620669744
Merged-chr3-148895919-1	chr3	148895419	148896419	+	1000.0	f0_balb.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	58716.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.29919503006947	2.36311151919743	2.48014596447475	2.30934900605064	2.13032528826789	2.42894562950382	-0.600005352724335	0.487437341892336	1
Merged-chr11-11777403-3	chr11	11776902	11777902	+	924.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	31560.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.22250369848501	4.6554809738685	5.15129490125655	4.65810649004649	4.55066227306168	4.60541177622195	-0.279906111613574	0.565947278345849	0.867020310354631
Merged-chr8-71568449-4	chr8	71567951	71568951	+	994.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-420.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	5.84302290048035	5.74410123321387	6.00849829922782	5.08568493378283	5.1294920809324	5.48691042279664	-1.20152208962553	0.000485425311651653	0.0102725419270846
Merged-chr5-64810692-4	chr5	64810211	64811211	+	907.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7188.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	7.68736894671323	7.92995338377071	7.89556848748779	7.76995482414157	7.98485069470127	7.61371548288432	-0.04963467522198	0.833339591403806	0.961070491919313
Merged-chr2-103966550-2	chr2	103966050	103967050	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	MIRc|SINE|MIR	-3007.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	5.80261832420904	5.70587965034088	5.16639745702322	5.53094608877398	5.41389863034798	5.43558479399128	-0.267476526753993	0.460809958974777	0.814787289708095
Merged-chr17-27916464-1	chr17	27915964	27916964	+	541.0	f1_balb.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	7158.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.49569686557937	4.59634227118284	4.71009619282374	4.19445134697402	4.15029618877362	4.08932726228739	-1.18798137689672	0.00878486899314179	0.092038702994377
Merged-chr6-22356206-4	chr6	22355706	22356706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138587)	promoter-TSS (NM_138587)	-125.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.62901387259401	6.2629185867871	6.73906827246074	6.70552920924544	6.56110615438989	6.32848751443317	-0.00866322247571215	0.976522704538925	0.994723308989508
Merged-chr4-133467451-2	chr4	133466876	133467876	+	789.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-12757.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	4.97048407106638	4.65664115110848	4.93623488190281	4.02289243327545	3.97194146380194	3.92984749362307	-2.35837224081135	1.14824239665965e-06	6.12062481366149e-05
Merged-chr19-5809076-4	chr19	5808556	5809556	+	972.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6384.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	6.59526641446261	6.09460165865528	6.32994747296347	6.17763047640447	6.2458365729373	6.38968703535649	-0.146142777405193	0.626201914671673	0.892820577724479
Merged-chr9-31131918-4	chr9	31131396	31132396	+	823.541687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011176)	promoter-TSS (NM_011176)	-97.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	3.01000146431102	2.74720983434172	3.07113789937363	2.95589164964103	2.70052845851947	2.90936876944116	-0.439746436904029	0.54486315857424	0.857896259450602
Merged-chr17-56183955-4	chr17	56183430	56184430	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_080837)	promoter-TSS (NM_080837)	-10.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	7.99249845969835	8.34556650227876	7.65968271262464	7.89707042531794	7.9594769631272	7.4901745532949	-0.330798096470015	0.236215997544039	0.632609362278051
Merged-chr11-70497895-4	chr11	70497384	70498384	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7390.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	7.64623575082086	7.79747990172608	7.54573050342283	7.67853826085959	7.84205655414204	7.62178093184147	0.0730636229474185	0.749052383647691	0.937140288382646
Merged-chr11-74493330-4	chr11	74492842	74493842	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96816.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	7.28967426864155	7.41120766762608	7.2920902007143	7.57949669048876	7.84366265174692	7.44948713593602	0.452793797924172	0.0602640250178737	0.317793643593879
Merged-chr7-44847926-2	chr7	44847395	44848395	+	914.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001042655, intron 3 of 16)	intron (NM_001042655, intron 3 of 16)	1184.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	3.36311441741131	3.33162070713446	3.44850738540268	3.50920115399551	3.35149444423715	3.23339387829372	-0.0239455972055237	0.968390345176432	0.992776669007643
Merged-chr8-117259459-6	chr8	117258917	117259917	+	961.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	2398.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	5.26050369947634	5.29453274514844	5.6588923024307	5.82376584094545	5.4856899322277	5.58807453375416	0.44507426824165	0.20315594532808	0.593047970473348
Merged-chr12-69366779-2	chr12	69366279	69367279	+	790.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5371.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	4.70829787242803	5.14243035746388	4.51144624688421	4.800576930521	5.38522557750198	4.80273214688406	0.459266026269459	0.324093828929891	0.717287790132387
Merged-chr17-31557440-5	chr17	31556979	31557979	+	641.983337	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7294.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	5.13589846540346	5.40324220000969	5.45737753582598	5.36480869061786	5.27107209686803	5.07153819829132	-0.172597172185312	0.631979794224592	0.895412319810651
Merged-chr11-94596593-2	chr11	94596099	94597099	+	765.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	5187.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	3.53196725113437	3.38801585976804	3.75330465333636	3.62232792315421	3.46608533659034	3.67379370856744	0.096183606800312	0.867824634056188	0.969442397421746
Merged-chr14-56887644-3	chr14	56887153	56888153	+	870.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001360643, intron 1 of 24)	intron (NM_001360643, intron 1 of 24)	810.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	6.49252024748027	6.81790780383754	7.07587300729826	7.00893168085444	7.03579843000881	6.97951034616936	0.309654378596378	0.259620340265892	0.657223042078191
Merged-chr13-34314223-4	chr13	34313723	34314723	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	30959.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	6.09802552689953	6.20096720815984	6.37326855336477	5.83750628835155	6.06581894046262	5.85993617954882	-0.493926164706771	0.0986456799753705	0.418897826279453
Merged-chr18-65512916-9	chr18	65512583	65513583	+	885.4074099999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-67147.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	4.14081686136371	4.29819923002818	4.2559141827838	3.90191649999313	3.81817440579054	4.09869409290511	-0.874092557098002	0.075287727313801	0.361310983862213
Merged-chr11-108425139-4	chr11	108424634	108425634	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029606)	promoter-TSS (NM_029606)	-132.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	4.40383987842107	4.00693958027205	4.28352518944427	4.36695806724983	4.18928227527107	4.26129118189441	0.0862932472104459	0.856193461942515	0.966388301428551
Merged-chr17-29773525-4	chr17	29773023	29774023	+	878.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-56506.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	3.40101182045362	3.34123314827516	3.3502543148641	3.65286796659541	3.27071452543432	3.30540836775548	0.218011690396801	0.722787393844489	0.928947689973901
Merged-chr2-58865389-4	chr2	58864888	58865888	+	875.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362394, intron 11 of 13)	RMER1B|Other|Other	110204.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.10700285642031	3.92152869054788	4.08588621049848	3.93224862526628	3.78940954627449	3.96467996550266	-0.446406770067507	0.374341409915905	0.758058822552447
Merged-chr16-4885042-2	chr16	4884542	4885542	+	719.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1058.0	NM_001357062	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	3.51518690299965	3.54512377652019	3.29863456662133	3.43533893899778	3.44218842075095	3.59497812170816	0.0904670978315897	0.878124604643062	0.971816559882595
Merged-chr2-120630445-2	chr2	120629945	120630945	+	857.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	20850.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	4.8831275707128	4.87912637896564	5.34420676776923	5.49353991055303	5.72687366414975	5.37755590084685	1.02403387456008	0.00637041994503661	0.0729992454908167
Merged-chr4-136179619-3	chr4	136179075	136180075	+	805.416687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177733, intron 2 of 6)	intron (NM_177733, intron 2 of 6)	-1207.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	3.73594992521673	3.95932338202057	3.93958602305684	4.11830717890464	4.04353322394896	3.95931487541221	0.49541042711094	0.325448446363005	0.718159390122652
Merged-chr2-162931332-6	chr2	162930809	162931809	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026499)	promoter-TSS (NM_026499)	-199.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	9.0938531149923	9.44999795122092	8.79237594151054	8.98001847691545	9.0596782226019	8.73810578443221	-0.286412697582535	0.251257953274633	0.648731936769727
Merged-chr8-71487858-4	chr8	71487357	71488357	+	969.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_032544)	promoter-TSS (NM_032544)	-246.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	5.50729509593361	5.73620734844735	6.05131655263354	5.45743409766853	5.42601475605042	5.92192155768668	-0.302214908420762	0.404095655648736	0.779358170625725
Merged-chr11-46806994-4	chr11	46806482	46807482	+	968.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3817.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	4.88241137628276	4.4790229648446	4.51448046242236	4.57033884736345	4.07540630298328	4.70158049659562	-0.42656370465691	0.379346235985737	0.761777656974245
Merged-chr9-44344718-2	chr9	44344218	44345218	+	658.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013551)	promoter-TSS (NM_013551)	-490.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	5.09582686382865	4.8552471076043	4.89108817381575	5.28189873449889	4.82160071146615	5.16551716917904	0.306224982801778	0.440324259755656	0.801751735698024
Merged-chr6-72552272-4	chr6	72551759	72552759	+	852.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271395, intron 1 of 9)	MER31A|LTR|ERV1	2612.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.14206667928047	6.15112368632234	6.62017311274282	6.27193357086884	6.17153239733131	6.32071411591605	-0.0985166225759357	0.743920421042575	0.935814517574594
Merged-chr19-6279441-3	chr19	6278912	6279912	+	869.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2516.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	3.97193230501162	3.48246150832891	3.6031404160925	3.79937213368809	3.35693113996374	4.11057127316256	0.268690927158792	0.672678355925	0.910949422492829
Merged-chr18-69402193-4	chr18	69401707	69402707	+	892.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	56047.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.33631786831937	3.25237025992363	3.06126485960293	3.61386494752371	3.42739064590353	3.32477055039255	0.919361636327338	0.150422589282262	0.517247822505929
Merged-chr2-11508678-4	chr2	11508119	11509119	+	617.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177758, intron 1 of 14)	B1_Mus1|SINE|Alu	-6529.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	2.60720426834011	2.50096319357827	2.77339583164616	2.38122862024276	2.45429235666633	2.54354749422755	-1.00505320613586	0.211804435048669	1
Merged-chr5-145205310-4	chr5	145204794	145205794	+	977.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001167944, exon 1 of 4)	5' UTR (NM_001167944, exon 1 of 4)	735.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	7.07269868146331	7.31759573811154	7.08518676574967	7.31700698131966	7.53504052912118	7.31306727587884	0.343930220397789	0.158635526032538	0.530435761526001
Merged-chr16-9132312-4	chr16	9131820	9132820	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	302220.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	3.24080701948831	3.44709115665949	3.56951996078371	3.10604424027615	3.12477792535105	3.48762069861814	-0.710248902945406	0.271858043171912	0.66923357463532
Merged-chr11-100850592-4	chr11	100850070	100851070	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	15.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	8.09306228566043	7.49241222606803	7.54779618961141	7.98245813198946	7.73002403979851	7.69120328559536	0.0885611803349014	0.744263277462908	0.935908101256887
Merged-chr1-195017262-2	chr1	195016762	195017762	+	660.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_015566)	promoter-TSS (NR_015566)	-137.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	3.3102578136863	3.5554342311899	3.33273717742845	3.02845330292591	2.94078880805332	3.17476211867343	-1.5945430690883	0.0165940849333545	0.142611094725734
Merged-chr5-135939584-2	chr5	135939081	135940081	+	890.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4940.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	3.04348496329403	2.99298056575805	3.14750862337191	3.08296595119931	2.87911718450572	3.21877277863809	0.00404102374767757	0.995215423266151	0.998961028701257
Merged-chr2-32361682-4	chr2	32361188	32362188	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1322.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	6.93034326215189	7.41731612626201	7.06174763522162	6.77564297728803	6.99445080348217	6.80776364860457	-0.442410817710569	0.104099801155214	0.430302549493192
Merged-chr2-150750837-4	chr2	150750319	150751319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1738.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	5.51413713152099	5.70274389276102	5.69600750734106	5.75428810052192	5.94644397454691	5.56282218735931	0.253351655924613	0.436641641722129	0.799551248563286
Merged-chr8-117279021-2	chr8	117278521	117279521	+	728.68335	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	22002.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	3.43910432718691	3.20631022861947	3.50228554574406	3.66467561754799	3.25518504327734	3.57300054615904	0.448800400620245	0.469225803521825	0.818930712715916
Merged-chr10-118622296-4	chr10	118621808	118622808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-65783.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	4.26684640839759	4.34074601656611	4.46575549872279	4.87358687991018	4.60381346724977	4.61682552604435	0.866888261097515	0.0440000411245077	0.263910166693656
Merged-chr16-90198386-2	chr16	90197886	90198886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22356.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	7.22247580469502	7.26723580199618	7.21567784733789	7.34746025404515	7.54728884570098	7.35377765700853	0.279433353861566	0.227108259644991	0.622213514105616
Merged-chr10-19575481-1	chr10	19574981	19575981	+	656.75	f0_balb.idr	Intergenic	Lx6|LINE|L1	-16468.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	4.44913498736468	4.38225439343737	4.61581887470886	4.4119700769933	4.58463400131368	4.96231410483354	0.447102799130949	0.316830717940303	0.710777474639496
Merged-chr4-155840463-3	chr4	155839918	155840918	+	941.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024263, intron 1 of 9)	intron (NM_024263, intron 1 of 9)	738.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	5.84910565872003	5.83682717292742	5.56736647940997	4.64100047357931	4.72420236646322	4.77851285572992	-2.16949699137485	4.4283818182294e-09	4.37101772634913e-07
Merged-chr2-156352356-3	chr2	156351872	156352872	+	669.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-39668.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	2.85071177862936	2.98357629677284	3.1194411069857	4.07805762527169	3.52161389947484	3.50448490238298	3.27051595661822	1.4167977528763e-05	0.000541271383936322
Merged-chr5-76303974-4	chr5	76303474	76304474	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305222)	promoter-TSS (NM_001305222)	-472.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	8.49963994559699	8.46942647968052	8.3363579842629	8.46476626591488	8.09729858537855	8.33807762258408	-0.185544129415878	0.400410253953666	0.77660978557555
Merged-chr7-137437576-4	chr7	137437063	137438063	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023140)	promoter-TSS (NM_023140)	-10.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	6.47485609200573	6.72116999636921	6.67973787560413	6.67253301332197	6.3950652308759	6.05422310665705	-0.35426217014691	0.239101336173496	0.635830744018032
Merged-chr6-134414255-6	chr6	134413811	134414811	+	931.8174439999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001355686)	promoter-TSS (NM_001355686)	-117.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.07889807241694	5.18636585682487	4.85481613788307	4.86330822093157	4.80382608566154	4.95826627910235	-0.405987370521808	0.289649806691723	0.68736791247768
Merged-chr10-80152770-5	chr10	80152215	80153215	+	929.5599980000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	3033.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	5.72519930262559	5.81996532428343	6.1361892101749	6.05917712140877	5.97721499696031	6.00370278025156	0.209964746930402	0.494688206935037	0.832098209532918
Merged-chr15-33213129-2	chr15	33212629	33213629	+	580.5	f1_balb.idr|f1_c57bl6.idr	exon (NM_018755, exon 3 of 9)	exon (NM_018755, exon 3 of 9)	130000.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	4.30615364624338	4.38977396539593	4.72671810529029	4.46851695975437	4.3700991719804	4.78977497326001	0.17263139384779	0.706756695771484	0.923133439601251
Merged-chr6-120479466-4	chr6	120478983	120479983	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008359, intron 11 of 12)	intron (NM_008359, intron 11 of 12)	14324.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	6.59231901608142	6.41418432234003	6.94015905375236	6.43532920875432	6.59496841747279	6.65459938208661	-0.14874921703106	0.604355331313092	0.883052635044863
Merged-chr16-4200214-4	chr16	4199725	4200725	+	998.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001025432, intron 1 of 30)	RSINE1|SINE|B4	13179.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	5.90581103670047	6.03980263875199	5.88346378578309	6.20901533759434	6.43901608210457	5.72920118882518	0.388990052609658	0.240523914284109	0.63757036720849
Merged-chr2-57124184-4	chr2	57123686	57124686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001139509)	promoter-TSS (NM_001139509)	-183.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	6.23571599030268	5.86114384513389	6.02521579815349	6.06597877086793	5.6988715889305	5.74062702791535	-0.358968514500199	0.265141470129066	0.662897492458139
Merged-chr5-35729314-4	chr5	35728802	35729802	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-26.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	8.48173487027897	8.78724930589862	8.34838942038821	8.4887149810079	8.91318519149405	8.39163249855769	0.0943054854212022	0.710206768353662	0.924281856562368
Merged-chr4-46563962-4	chr4	46563442	46564442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	2498.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	7.59308548500614	7.60758143400063	7.35327465455422	7.2661104918614	7.4159486690473	7.13223362142156	-0.360034040840907	0.135150730217747	0.491294119824757
Merged-chr7-67528382-7	chr7	67527926	67528926	+	956.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	116810.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	5.49156908684837	5.27212973370008	5.47915575121067	4.78517817846444	4.69977584315208	5.01716820127773	-1.23907400280176	0.000930840483803355	0.017026300790992
Merged-chr10-10472451-4	chr10	10471936	10472936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001127353)	promoter-TSS (NM_001127353)	-122.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	7.5953391758139	7.77566204287175	7.51341653828502	7.65422482449236	7.84423800625615	7.70336290792342	0.147442472340192	0.518205113137656	0.84514310695073
Merged-chr9-70208279-3	chr9	70207790	70208790	+	779.1777950000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	940.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	3.85067831668391	4.15596953851396	4.02083033749965	3.67851522153135	3.60269091526918	3.57084901018107	-1.2968611950255	0.017100810257388	0.145508152152238
Merged-chr11-106173382-2	chr11	106172882	106173882	+	803.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252449, intron 3 of 10)	intron (NM_001252449, intron 3 of 10)	-12653.0	NM_001356458	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.63169204084731	3.71325461104256	3.60331833518528	3.88966594494747	3.78257153936431	3.6749666066837	0.449710757349587	0.404118326909318	0.779358170625725
Merged-chr12-102499761-1	chr12	102499261	102500261	+	657.5	f0_balb.idr	Intergenic	Intergenic	29851.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	3.15764723001772	3.25122546016146	3.38288593803997	2.82301577616593	2.87214037772079	3.06845432160375	-1.60559230422068	0.021124687796585	0.167435989919817
Merged-chr2-118550224-2	chr2	118549723	118550723	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-537.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	5.25000545817075	5.5525794752962	5.83043886320883	5.92878232542849	6.10568403428611	5.6314748474121	0.650781693117605	0.0660233100834028	0.335347795471846
Merged-chr5-36747974-2	chr5	36747474	36748474	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_133724, exon 1 of 1)	3' UTR (NM_133724, exon 1 of 1)	705.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	6.02074352474879	6.34381441304524	6.4077853024999	6.08973636390685	6.11180273889499	6.17914346085949	-0.23181969401996	0.429606000121376	0.795827826691029
Merged-chr9-58552847-4	chr9	58552365	58553365	+	886.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11925.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.07254951632876	3.80142095207339	3.9337880474805	3.80465137029112	3.83722469021962	3.85306715161042	-0.342603827891051	0.506275186185435	0.838365362350894
Merged-chr11-98785905-4	chr11	98785420	98786420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9596.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	7.55972744050641	7.41975657369328	7.45805361586036	7.58474040716769	8.05315745806728	7.76911534143398	0.495075625245221	0.0426330644228541	0.258916285270918
Merged-chr1-125435683-7	chr1	125435189	125436189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	38.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	7.76187732763916	7.65649786115448	7.39939744538699	7.88787893420519	7.75980214377988	7.67915162969799	0.228061687075208	0.330709155251117	0.72213424106794
Merged-chr9-100440451-7	chr9	100439944	100440944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46029.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.37737184652872	6.1257488830559	5.86654842219082	5.67810768793114	5.08864826011352	5.60836446039313	-1.21070134385953	0.00080216696690728	0.0152042617272029
Merged-chr5-136173772-4	chr5	136173307	136174307	+	972.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-3151.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	4.79718342750607	4.78016736237209	4.55848118247885	4.95058150667137	4.7838297533732	5.01291450224733	0.421880958572337	0.291684308818288	0.689198857889432
Merged-chr2-22727337-4	chr2	22726836	22727836	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-46991.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	4.28945986346373	4.36776011571771	4.17666139389252	5.03071444576307	5.05804832125183	4.79135323651954	1.64307398549942	0.000131019866138567	0.00356271275217578
Merged-chr11-103412699-4	chr11	103412160	103413160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	4.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	8.49182552851871	8.68032215624047	8.22359605817419	8.56724199450669	8.7627620355601	8.21111137100124	0.07835168299201	0.756638613962151	0.939652679558287
Merged-chr15-79686606-2	chr15	79686106	79687106	+	821.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028792, intron 1 of 3)	intron (NM_028792, intron 1 of 3)	1266.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	3.7906793545386	3.48190244438258	3.4482162687536	3.59735033590445	3.43236249323241	3.78539994525064	0.0622281693253641	0.916150845345003	0.981243905880233
Merged-chr11-119603103-6	chr11	119602645	119603645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001306081, exon 1 of 33)	5' UTR (NM_001306081, exon 1 of 33)	240.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	6.79531218533263	7.02424164455596	6.77135383084673	6.83261829269379	6.82458369061279	6.61587534559465	-0.164581538846084	0.525536094481502	0.849027787811941
Merged-chr16-21630772-4	chr16	21630267	21631267	+	995.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	63898.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	6.39686380763711	6.42285885563619	6.60829603891213	6.2177342010986	6.57419314407914	6.63506846224012	0.0225337188771655	0.936754398440264	0.986037792257163
Merged-chr7-4723865-4	chr7	4723368	4724368	+	984.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177887, exon 4 of 5)	exon (NM_177887, exon 4 of 5)	1214.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	7.03130027969963	7.12707244744917	7.21795285897808	7.21232353759885	7.35314333854311	7.4475536176639	0.322821248474502	0.17397196270242	0.553189356180945
Merged-chr11-98775422-4	chr11	98774924	98775924	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-47.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	9.43091754505643	9.28151572137	9.01740425851327	9.12308307927989	9.5280040385063	8.86935624918521	-0.0653751349609229	0.797579050851626	0.951799370596145
Merged-chr9-65554124-2	chr9	65553643	65554643	+	776.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_153119, exon 6 of 6)	3' UTR (NM_153119, exon 6 of 6)	25944.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	4.74215585946406	4.70359179168345	5.09951390709895	4.98433915626478	5.04903425216013	5.16294842766745	0.473945940067683	0.225163886868886	0.620063864646258
Merged-chr13-9129068-4	chr13	9128556	9129556	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	35175.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	7.09293405191423	7.11036545571845	6.70581546502391	6.90085261445328	6.97539980514571	6.78109825532937	-0.152984526254444	0.561515541008942	0.865407801976397
Merged-chr16-87638285-4	chr16	87637804	87638804	+	999.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	BGLII_Mur|LTR|ERVK	-60650.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.30368510657213	5.61309672350392	5.66451381692236	5.37612883430908	5.04670005081578	5.30459890399411	-0.568039303213439	0.11409379400476	0.451084121046662
Merged-chr11-20108368-4	chr11	20107913	20108913	+	901.804199	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146243, intron 1 of 8)	Lx8b|LINE|L1	4538.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	5.44930577501309	5.53954859541529	5.76318177918013	5.93420928630949	5.98856123626458	6.67448552026281	1.14355487797322	0.00147448098054006	0.0244079697740299
Merged-chr10-26772415-4	chr10	26771937	26772937	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-75.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	7.20512312319042	7.41690889907609	7.06339781988255	6.81885219293673	7.10549608642661	6.61203875947961	-0.556389837169176	0.0437501734232375	0.26297510873371
Merged-chr10-117363275-4	chr10	117362768	117363768	+	985.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013391, intron 3 of 9)	B2_Mm2|SINE|B2	13705.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	3.97962441046391	3.98948679030852	4.17711826700558	3.90228825441035	3.93188824988885	3.86545687973189	-0.431237032042705	0.387776250698213	0.767721672469137
Merged-chr16-90458862-2	chr16	90458362	90459362	+	633.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72465.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	4.03797306784858	3.63075515825634	3.47676864062313	3.42090817750249	3.43314147284525	3.76608931930392	-0.683144475126414	0.263720770907077	0.661691581148752
Merged-chr8-93975168-2	chr8	93974668	93975668	+	911.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011787, intron 11 of 13)	intron (NM_011787, intron 11 of 13)	37472.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	2.36303924176063	2.32801002614404	2.2473134921847	2.38572358814612	2.36898178095997	2.51646451215613	0.687761394717719	0.408060422471168	1
Merged-chr4-63399309-7	chr4	63398780	63399780	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1040.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	6.96783706738152	6.92546588362368	6.80852069028506	6.81196030040642	6.99301137008199	6.47030689221284	-0.177689179031679	0.517134631347775	0.844527100635531
Merged-chr1-87756332-3	chr1	87755869	87756869	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029846, intron 1 of 17)	CpG	358.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	8.15857458665931	8.72448220679862	8.30330828352302	8.10010597054159	8.33023853032103	8.278881660747	-0.254705760656813	0.304382265141418	0.700883185755923
Merged-chr4-62291327-4	chr4	62290837	62291837	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290518)	promoter-TSS (NM_001290518)	-210.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.77806310310297	4.73750776849566	4.91041214659426	5.15296884357991	5.13914857923871	5.2120746661442	0.784227272257925	0.03435172785446	0.226919580058729
Merged-chr12-73565256-2	chr12	73564756	73565756	+	725.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16773.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	2.42588278787892	2.35194174980566	2.46783813318892	2.24736544437619	2.08700807900106	2.35099424520751	-1.31847418922958	0.138774695184569	1
Merged-chr4-117137349-4	chr4	117136841	117137841	+	903.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3378.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	4.89680575945758	4.80963482441089	4.5237273899052	4.77610825441261	4.85299893069699	4.67909614995529	0.0303783621731764	0.941007038612893	0.986888338850358
Merged-chr11-72215628-2	chr11	72215124	72216124	+	1000.0	f0_balb.idr|f0_c57.idr	promoter-TSS (NM_026068)	promoter-TSS (NM_026068)	-32.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	7.0067161416335	7.14541816632635	6.8467965908296	6.98071113584764	7.29516955568401	6.77949560304996	0.0569353202400611	0.835266763638032	0.961603808578136
Merged-chr10-4612872-4	chr10	4612381	4613381	+	963.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	892.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	5.8142374328529	6.13529972966925	5.61653928733568	5.57586267835602	5.49162544598416	5.22901927406343	-0.800004650489382	0.0223462272476174	0.173696490897389
Merged-chr11-116429810-2	chr11	116429310	116430310	+	763.6875	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4284.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	5.48879912618268	5.70877440172526	5.5077051271974	6.08199273635943	6.64176095874199	6.0298531053887	1.25486378125699	0.000232439850371159	0.00565852986240006
Merged-chr7-123330754-4	chr7	123330231	123331231	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	39184.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	6.0417584367341	5.88684291888396	5.95198744780831	5.89924941979797	6.10030004518661	6.26688551203328	0.224540514635638	0.454023944020437	0.810100289331925
Merged-chr11-54865901-2	chr11	54865401	54866401	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008248)	promoter-TSS (NM_008248)	-482.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	5.28685859870845	5.56387928663635	5.38931461369794	5.18876501181452	5.42359557602611	4.70945730174863	-0.520289200070365	0.202379955380511	0.592214922711501
Merged-chr10-77032644-3	chr10	77032116	77033116	+	890.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199271)	promoter-TSS (NM_001199271)	-123.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	3.85502747098681	3.78417881428052	3.91392245757483	3.98726439270579	3.87505808810367	3.72466658139399	0.0710403438376054	0.891022852472876	0.974714927935992
Merged-chr7-73557511-2	chr7	73557011	73558011	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_037569, intron 1 of 4)	intron (NR_037569, intron 1 of 4)	884.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	8.2996047608682	8.70622265816276	8.40150950430287	8.48751323824678	8.73567088078256	8.54522640977652	0.155553336053402	0.495997746224769	0.832855017149606
Merged-chr11-50042802-3	chr11	50042307	50043307	+	911.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	17476.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	5.9129177857605	5.93600285630578	6.00035250473198	5.92213549765849	6.1413891882136	6.56500249962092	0.477968019838558	0.135833985715808	0.492611326858478
Merged-chr6-38913103-4	chr6	38912605	38913605	+	983.3125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5881.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	4.35879614422607	4.25197222280673	4.02637594695527	4.18513907573052	4.09553069083433	3.99328588984171	-0.366541834785764	0.449390639276273	0.807761520627757
Merged-chr17-24173602-4	chr17	24173105	24174105	+	830.458374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3927.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	4.40796253499044	3.80713570812922	4.22108844466555	4.16935688170899	4.3322226376011	4.41851746243557	0.373869237381969	0.464467722048115	0.816423299200476
Merged-chr11-109376645-2	chr11	109376145	109377145	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-12991.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	5.12207520670004	5.23563382149504	5.15695433924012	5.88388135299426	5.34705459983354	5.41839278003143	0.780520739626664	0.0337698457027427	0.224685856487591
Merged-chr7-127875779-4	chr7	127875271	127876271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-129.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	6.99275283523527	7.13645311424076	7.270189341075	6.91983740636755	6.86296001613002	7.01442109414955	-0.309862253194246	0.208119794641087	0.599041414336639
Merged-chr7-83722669-4	chr7	83722148	83723148	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001360087, exon 2 of 19)	exon (NM_001360087, exon 2 of 19)	9750.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	4.65166676629846	4.46072520815482	4.58459271339527	4.95766268905413	5.09548303727547	4.96293905357482	1.01576646713209	0.0103150567596274	0.102617795654601
Merged-chr19-21785272-4	chr19	21784772	21785772	+	929.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	6932.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.16777638334543	5.17864655158418	5.16691635806074	5.05489251144699	5.4052735107366	4.82130872650503	-0.073290735828836	0.851364959487046	0.965215411919547
Merged-chr7-116409670-4	chr7	116409187	116410187	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33771.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	6.72247499504094	6.92368601090942	6.60602634572965	6.43706318769321	6.80802016844727	6.54244697726578	-0.235597014660557	0.397045504600664	0.773962478255447
Merged-chr19-6940343-2	chr19	6939843	6940843	+	567.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177361, intron 2 of 6)	intron (NM_001177361, intron 2 of 6)	850.0	NM_207220	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	2.10494190793058	1.96852991616383	2.26108735030429	1.87863850012957	1.96620897365041	1.94112075945288	-1.48686373955759	0.131865409146383	1
Merged-chr13-97523967-4	chr13	97523441	97524441	+	716.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36059.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	3.05729019221516	3.25855492784117	3.22945873215652	3.50152785083044	3.23764837961272	3.57333282851588	1.01961194818443	0.108590333724441	0.440273571814211
Merged-chr3-136080124-4	chr3	136079573	136080573	+	646.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-239804.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	3.73654112837257	4.25639421371982	4.12124667677832	3.9279516696149	3.77182904178195	4.27499777196736	-0.165680392489205	0.763370569078891	0.941793063578371
Merged-chr8-94183920-2	chr8	94183420	94184420	+	596.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR28|LTR|ERVL	4831.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	5.61468999585763	5.70240652218227	5.44237393950263	5.65384639934185	5.82340587066741	5.27411432902906	0.040995820539167	0.907050272082425	0.978868492078838
Merged-chr11-76587547-4	chr11	76587039	76588039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9800.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.21982975609685	8.36092484547298	8.11618430629964	8.03124628969711	8.45723967156395	8.02726024192237	-0.0605304046864719	0.800775768794818	0.952697697308098
Merged-chr4-144899333-2	chr4	144898833	144899833	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	6196.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.18611746690106	5.2987578885142	5.65377208582938	5.05680566908885	5.30640554499736	4.87619428440937	-0.563184157576822	0.150487029874298	0.517334494681425
Merged-chr2-120404147-4	chr2	120403620	120404620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-4.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	7.47428550784441	7.62592467929245	7.58302030118246	7.56585267802299	8.0756765363623	7.27009921180789	0.191463865086602	0.501066589614082	0.835421019759285
Merged-chr15-97163233-4	chr15	97162724	97163724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_155278, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	4020.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	7.20906632384085	7.17681874038201	7.06774087334141	6.84675563561536	6.86344066048751	6.71751306116916	-0.519495130228743	0.0322505408396483	0.21818871470733
Merged-chr2-90964956-3	chr2	90964459	90965459	+	690.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	24562.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	4.42087754687792	4.79558999246713	4.5659511691367	4.4953208210702	4.48946845897577	4.54978166522937	-0.240542993963292	0.577349230859589	0.872117086580778
Merged-chr9-45407628-1	chr9	45407128	45408128	+	1000.0	f1_balb.idr	intron (NM_007503, intron 1 of 5)	intron (NM_007503, intron 1 of 5)	1551.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	2.73023049765733	2.91552508833914	3.08842369911158	2.74074560698537	2.99875571189471	3.0475428804245	0.0952837971284053	0.895626375509529	0.975665889379756
Merged-chr11-45944391-2	chr11	45943920	45944920	+	816.666626	f0_balb.idr|f0_c57.idr	TTS (NM_001290737)	TTS (NM_001290737)	515.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	5.10387983519296	5.23379962575084	5.09490046740653	5.03346180432436	4.86835214760463	4.70068935532254	-0.574317279807442	0.13172770293606	0.485334692964207
Merged-chr4-42954557-4	chr4	42954043	42955043	+	780.174988	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355439, intron 3 of 4)	intron (NM_001355439, intron 3 of 4)	4147.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	3.02851232716435	2.83230573377823	2.85664218617024	2.97588860769831	2.80752128384452	3.05021371772725	0.155886025041933	0.824082428662323	0.958461473318254
Merged-chr2-128128801-2	chr2	128128301	128129301	+	601.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_207680, exon 2 of 4)	exon (NM_207680, exon 2 of 4)	1226.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.15517174848171	3.96667658332464	4.36751846268118	4.10356339994288	3.9163367928789	3.93648289862032	-0.513378937197306	0.306635720741455	0.702880028965702
Merged-chr16-76977164-4	chr16	76976632	76977632	+	889.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	33749.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	3.81794586327114	3.63937402813576	3.8367343546466	3.81740916954878	4.23288510286924	4.43527906441811	1.25220202809642	0.020558864518385	0.164328722271448
Merged-chr18-4797956-4	chr18	4797453	4798453	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14533.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	4.1691181346179	4.44310610136862	4.74647208211461	4.05127836531304	4.07959219788726	4.44227821470522	-0.717206179879135	0.149497507312785	0.515961080764456
Merged-chr15-86162174-1	chr15	86161674	86162674	+	630.0	f1_c57bl6.idr	intron (NM_145475, intron 3 of 12)	B2_Mm2|SINE|B2	-23554.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	3.70384285638755	3.56303705416456	3.77048481913387	3.63979122303269	3.43876818304561	3.4693523349896	-0.564944076865698	0.319098983170743	0.713083570990508
Merged-chr10-77581656-4	chr10	77581163	77582163	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	8.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	7.17141410478739	7.13734834947096	6.93432504970146	7.18692600305391	6.98706015603853	6.87468043354863	-0.0984971471411904	0.695536416869305	0.919289041383579
Merged-chr7-142387426-2	chr7	142386926	142387926	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	444.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	8.17764839128377	8.45679265099493	8.16258111238747	8.52972385781069	8.56797924248132	8.23169510968465	0.251132110598783	0.27242543469623	0.669663338532819
Merged-chr3-136425470-2	chr3	136424970	136425970	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B4|SINE|B4	23879.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	4.24457475759172	4.23893277907485	4.64488427096469	4.09581190616039	3.8934085415625	4.19046830483303	-0.895391435059519	0.0696799521178074	0.345526189262129
Merged-chr14-52021493-2	chr14	52020993	52021993	+	591.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253696)	promoter-TSS (NM_001253696)	-760.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	3.76138793032607	3.64388078070851	3.76660658161213	3.62390098424879	4.11447818065697	3.83669295250208	0.511283631170398	0.354840188051021	0.741885078831835
Merged-chr10-80148926-4	chr10	80148431	80149431	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	659.0	NM_001347117	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	8.756142748882	8.68692176972848	8.36892115083824	8.39127558285926	8.78011831466108	8.23955105184591	-0.166517787434927	0.506050623907319	0.838289047715586
Merged-chr7-16406246-4	chr7	16405781	16406781	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	5085.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	6.61939971786672	6.92831210096365	7.37140787861186	6.73846349986079	6.64295511425482	6.8955745663761	-0.376901054415129	0.211582440086487	0.603945120913907
Merged-chr11-29495901-4	chr11	29495397	29496397	+	993.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	19136.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	5.34327093410296	5.2045544047495	5.30691083990288	4.80834193412754	4.80497471337926	5.185364667425	-0.745482432838178	0.0477582111055472	0.276847236287472
Merged-chr8-117367582-4	chr8	117367051	117368051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028941, intron 1 of 20)	L2b|LINE|L2	18381.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.90032277542914	4.60462370038904	4.83075518484111	4.62910531217398	4.57083274570874	4.8595071794996	-0.231782963364867	0.575142549720121	0.87094931637326
Merged-chr2-128968280-3	chr2	128967798	128968798	+	922.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178404, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	896.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	6.96308866110316	6.87631980504491	6.65547122827416	7.10882233380593	6.35070311670057	6.84057680047757	-0.0641185105765829	0.836145506058924	0.961948623063023
Merged-chr7-68129239-4	chr7	68128747	68129747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134986.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	4.96264507663751	5.44914292306534	5.61525451611053	5.13327728869665	5.01369564487939	5.54984641406618	-0.243496161470043	0.551018255580869	0.860923422556561
Merged-chr2-27366387-3	chr2	27365891	27366891	+	953.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	61217.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	6.1892847812218	6.32692738063305	6.35570379993671	6.17692062989506	6.14896913456769	6.22003821631546	-0.184436902790383	0.504645490047959	0.837806481766929
Merged-chr7-102246114-4	chr7	102245591	102246591	+	990.6875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4027.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	5.14442559530339	5.589294502043	5.94795898245036	5.90459061680615	5.73174107460092	6.02981810418277	0.540205489473645	0.145353869061645	0.508390278977779
Merged-chr7-101649061-4	chr7	101648555	101649555	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14713.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	6.98579590778431	6.94915001382896	6.68984013450853	6.46039217913846	6.59198197979972	6.16620783335171	-0.719763337609366	0.010725147911642	0.105544623883202
Merged-chr12-105786055-6	chr12	105785673	105786673	+	822.055542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	1476.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	6.07122367557808	6.22166946410953	5.64137854680192	5.94367189351425	6.15345107023426	5.87111483639613	-0.020742853814067	0.949691398620788	0.988243921877722
Merged-chr4-101157405-2	chr4	101156905	101157905	+	624.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146145, intron 20 of 24)	intron (NM_146145, intron 20 of 24)	88367.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	2.48754401699058	2.54955468446772	2.79200710668696	2.7270331072824	2.4124651442242	2.42243131694384	-0.473373850396271	0.564672654170553	1
Merged-chr10-98878464-4	chr10	98877953	98878953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-36189.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	7.56154917463632	7.36805521328023	7.34785204067019	7.26408534881951	7.606936432043	7.31463964488048	-0.02980084267228	0.90349711077203	0.977832715016903
Merged-chr5-34637183-4	chr5	34636690	34637690	+	959.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356979)	promoter-TSS (NM_001356979)	22.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	5.10435212211018	5.31763616415486	5.2049664743362	5.62356719667419	5.46883094020494	5.20134356537865	0.468328303406052	0.189132121614243	0.574748833083779
Merged-chr3-103871906-1	chr3	103871406	103872406	+	548.0	f0_c57.idr	intron (NR_104070, intron 3 of 22)	(CAAA)n|Simple_repeat|Simple_repeat	11629.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	4.49437637101927	4.23055617727219	4.66634236832841	4.7642186007154	4.96306826545451	4.771015245495	0.897453396996507	0.0362276884949982	0.234153896366385
Merged-chr9-25482577-4	chr9	25482089	25483089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	992.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.44578794956255	5.93387915544747	5.61163396429131	6.22821338357433	6.26280837097621	5.8220916531185	0.119012934035779	0.744776572298971	0.936032341688524
Merged-chr7-6331334-4	chr7	6330835	6331835	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-901.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	4.87671962910424	4.99060125059315	5.18648456491097	5.31464667634159	4.89044737437849	5.39823513454942	0.401116037803854	0.308539501452477	0.704565421726157
Merged-chr6-120172798-2	chr6	120172298	120173298	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_016718, intron 1 of 3)	L1MD3|LINE|L1	-21025.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.89237985040347	5.47911715501174	5.42387758917178	4.86030588379636	4.82006284813371	4.81929628387484	-1.61577066237806	1.9263713219141e-05	0.000706743849002771
Merged-chr9-106307449-2	chr9	106306949	106307949	+	715.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027354, intron 8 of 10)	MIRb|SINE|MIR	26388.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	5.76246604607263	5.81818197027699	5.4728985091627	5.68653632387751	5.94979837923326	5.91549111090227	0.274235317680281	0.39611497443326	0.773332291042782
Merged-chr3-95228753-4	chr3	95228255	95229255	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	-78.0	NM_019914	56772.0	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	6.84185929782059	6.72134978098002	7.03886656278381	7.17697114230001	7.25232454405816	7.20738629955362	0.530118016656082	0.0309661578786133	0.212997608065111
Merged-chr13-9454909-4	chr13	9454387	9455387	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178362.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	7.10472497622176	6.80187132598078	6.54837714603019	6.66089420836911	7.00650950244326	6.625898148887	-0.096419080176201	0.742762542779801	0.935365213905758
Merged-chr1-132133661-4	chr1	132133128	132134128	+	946.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008795, intron 1 of 15)	L2|LINE|L2	6057.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	3.02537403708843	2.77391166704853	3.08150372123579	2.87322679594054	2.74966873931522	2.59375078112834	-1.09690120206158	0.153623749918412	0.522554369357012
Merged-chr14-17410927-4	chr14	17410385	17411385	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-250075.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.47467236128878	5.62448855980892	5.35794957791201	5.42290839746653	5.8826366354937	5.88408324963968	0.464870106216112	0.179856148149757	0.561345475440548
Merged-chr8-11455393-2	chr8	11454893	11455893	+	856.7999880000001	f1_balb.idr|f1_c57bl6.idr	intron (NM_011227, intron 1 of 1)	B3|SINE|B2	-22536.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	4.68552524747332	4.30955266725446	4.83220763898447	4.75499676038128	4.36765792917564	5.09151168606242	0.327613867870692	0.493318809150138	0.831208279358962
Merged-chr2-166665689-3	chr2	166665195	166666195	+	940.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	48137.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.02984717139014	3.55539455624652	3.74653215028785	4.20063190489848	3.96376163093928	3.97508965727035	0.776991435538812	0.155620452022677	0.525449746121077
Merged-chr2-148489114-4	chr2	148488620	148489620	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-45585.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.2168839851094	6.41907236593949	6.08174959834438	5.85363793777012	6.05967924820902	6.02893824668079	-0.45882568428001	0.122049735342639	0.467328442243354
Merged-chr18-80256154-4	chr18	80255668	80256668	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001164424)	promoter-TSS (NM_001164424)	-58.0	NM_001164424	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	7.07943125043115	7.5057440397634	7.4363732910751	7.18055761865843	7.13582725473278	7.14587215222474	-0.296436196273916	0.238969930023227	0.635631523582239
Merged-chr1-178369058-4	chr1	178368570	178369570	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-31255.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	7.97880015690517	8.02878958670392	7.87916172074129	7.74379114306675	8.00275932295272	7.66631722823575	-0.208324080664218	0.360804846547999	0.746938274913623
Merged-chr9-13297220-2	chr9	13296720	13297720	+	602.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50264.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	7.09481949902037	6.99712012719604	6.58746334743588	6.94746761527299	6.88107937324584	6.82966710016709	-0.0538507420742729	0.841731085839234	0.962988975342446
Merged-chr6-113351812-4	chr6	113351300	113352300	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7878.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	6.51780127767932	6.69913491599716	6.23558734936534	6.50460460618506	6.47528907466227	6.31646354997763	-0.114675394297101	0.688183469533608	0.917193226920892
Merged-chr8-106431539-2	chr8	106431039	106432039	+	797.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	16200.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	2.8885329731105	2.75180814366143	2.85993497251792	2.86157378313651	2.58534330603855	2.74765279735267	-0.523975246872215	0.478712999792935	0.823875884974983
Merged-chr4-53147186-2	chr4	53146686	53147686	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	12709.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.27898294935201	4.08381887777746	4.36801146782854	4.43457768000113	3.96781251933105	4.73816776296698	0.429161725423345	0.404509361039016	0.779671413327182
Merged-chr3-89715855-2	chr3	89715355	89716355	+	623.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	617.0	NM_001357958	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	2.90752827741587	2.97249938402308	2.85528136339013	3.09330532838206	2.72244993446964	2.99064474509039	0.128315543122431	0.85772761802098	0.966785186918462
Merged-chr10-78364258-4	chr10	78363769	78364769	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-12569.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	5.70013249121221	5.30072854605849	5.54513439667483	5.47212801642077	5.23716655208789	5.76170294861769	-0.0571689246324914	0.875243858059231	0.970952869655661
Merged-chr11-76736135-4	chr11	76735618	76736618	+	874.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27460.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	5.41703418442492	5.42014043044952	5.38827466846247	5.36751249478434	5.45453514029217	5.15607252532843	-0.129145016784154	0.706302784348704	0.922954363968952
Merged-chr15-38691490-4	chr15	38690999	38691999	+	863.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025494, intron 12 of 12)	intron (NM_025494, intron 12 of 12)	29595.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	3.74288715610785	4.00265994163726	3.69340196544549	3.64506490761472	3.68049798859933	3.81599534547499	-0.376469783562347	0.488045387070909	0.828879239225934
Merged-chr17-45570098-2	chr17	45569598	45570598	+	631.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008302, intron 6 of 10)	intron (NM_008302, intron 6 of 10)	3163.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	4.00343235084244	3.7650943353141	3.8485622645132	3.97215093423399	4.02052251018642	4.24168574699334	0.605721514682119	0.234366376166404	0.630452522567377
Merged-chr3-144717007-2	chr3	144716507	144717507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	3328.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.9077175078981	6.15739373370357	5.96898384429707	6.74232339619719	7.07232351437952	6.90665847154622	1.44941808335197	2.64415335789079e-07	1.67566422394042e-05
Merged-chr6-116193543-4	chr6	116193056	116194056	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-182.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	7.27785576440394	7.06031097869426	7.05127050138811	7.38478893211919	7.15021613804232	6.73248265726636	-0.0160604207349741	0.954158838912553	0.989495550016789
Merged-chr2-126483489-3	chr2	126482998	126483998	+	944.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359975, intron 2 of 27)	intron (NM_001359975, intron 2 of 27)	8055.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	4.36630458820204	4.67929517140241	4.44504378883946	4.37027438036005	4.59784691311188	4.51238066596467	-0.0207465870196015	0.962431263202727	0.990858153530085
Merged-chr11-115210209-2	chr11	115209709	115210709	+	559.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	22722.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	2.99389854166398	2.88443117149268	2.98343679058654	3.39282654575635	3.04875109991745	3.17819589410867	1.16271976544205	0.0857664977393085	0.387862549472479
Merged-chr6-87597638-1	chr6	87597138	87598138	+	804.333313	f0_balb.idr	Intergenic	Intergenic	-6895.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	3.6950030287864	3.45766583666181	3.88511492869278	3.93053313318511	3.8303824602966	4.09128213319398	0.859642509183616	0.118157460347605	0.459156615067228
Merged-chr8-56430342-3	chr8	56429853	56430853	+	597.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus2|LINE|L1	54615.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	3.0726271982948	3.38272072097267	3.20339343634376	3.24775759064061	3.3033082585269	3.44244173958618	0.407644847218749	0.520379231055913	0.846408410534246
Merged-chr1-75236461-4	chr1	75235957	75236957	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001159885)	promoter-TSS (NM_001159885)	34.0	NM_178055	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	7.6632053623362	7.91186022192216	7.46042133635873	7.48540164145668	7.47965581985057	7.32903605271609	-0.382457803997267	0.117405681510914	0.457525849904466
Merged-chr1-33876542-4	chr1	33876004	33877004	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177235, intron 3 of 6)	MIRb|SINE|MIR	31117.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	5.88779178591906	6.14923105176749	5.65827529666074	5.6472742742015	5.84268851136666	5.85350422270797	-0.252119263256214	0.438160170002817	0.800419903410376
Merged-chr7-89404291-4	chr7	89403803	89404803	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	-63.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	6.72151726675196	6.51841285416417	6.49716452976609	5.78436070123968	5.92921063446167	5.52771262405434	-1.36814648393586	8.79952846439962e-06	0.000358039689225312
Merged-chr19-44929820-2	chr19	44929319	44930319	+	702.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1300.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	4.70830800263694	4.76341316649497	4.86053436307515	4.76547268247826	4.78029178910373	4.81502677006659	0.0270245541982788	0.944825828263967	0.987875414328125
Merged-chr15-4821979-4	chr15	4821459	4822459	+	890.833374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B4A|SINE|B4	-76778.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	5.92212901324268	5.72943974418442	5.60140175790526	5.67551208363489	5.86385626757968	5.89879629990223	0.0890007051429698	0.778812842977053	0.945525176742995
Merged-chr17-74528358-4	chr17	74527841	74528841	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	46.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	8.07292470015237	8.26016062241014	7.99722345302425	7.95237488115844	7.98209874073907	8.00116138752206	-0.199670048343326	0.35273048924904	0.74027004513432
Merged-chr9-109021606-4	chr9	109021103	109022103	+	786.041687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16964.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	4.93260884581008	4.83090374877304	4.80913611229288	4.84632863455682	4.88198615635523	4.98423069292692	0.0892198429724787	0.815132001806844	0.956370078970016
Merged-chr12-69871781-4	chr12	69871290	69872290	+	909.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201519, intron 2 of 30)	intron (NM_201519, intron 2 of 30)	-21315.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	2.78648847756535	2.9040963046541	3.10477893015271	3.0303713829012	2.94584555882117	2.88145586009779	0.108583080220718	0.876483219247375	0.971334744650699
Merged-chr4-101265289-4	chr4	101264788	101265788	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-6.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	8.16456015913257	8.22806881864942	7.85414122651225	7.90487765552812	7.82733270936792	7.90224070769554	-0.315508429963892	0.162062319440692	0.535342738509256
Merged-chr11-116110304-4	chr11	116109794	116110794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-59.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	8.78909625748297	8.74571560414354	8.55741754692925	8.26350311543974	8.54969246513464	8.38571856271714	-0.410388708700563	0.0558623230538551	0.30432055628291
Merged-chr4-135972631-4	chr4	135972132	135973132	+	946.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-38.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	6.61586089141177	6.7781742542572	6.44755310732882	6.73112212987963	6.71460233903963	6.50732614126074	0.0497510308064213	0.853445343258707	0.965687837146459
Merged-chr12-37243603-1	chr12	37243103	37244103	+	628.0	f1_balb.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1964.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	3.89264114694783	4.23559016071839	3.91182657779423	3.87747682863157	4.3208912041934	3.70502207486203	-0.0579874055610971	0.918717179173449	0.981830247255695
Merged-chr2-58055554-2	chr2	58055054	58056054	+	956.416626	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2802.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	2.26553375784841	2.25867211719519	2.36997821768134	2.15039336900971	1.95661513448007	2.25175694067924	-1.32547467306432	0.159531821894792	1
Merged-chr12-112678684-4	chr12	112678135	112679135	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001100460)	promoter-TSS (NM_001100460)	-205.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	3.91830593032176	3.71051517010593	3.80868787089694	3.88920401386592	3.38872090587644	3.55583049714404	-0.626172148047934	0.281838297418226	0.679908771156903
Merged-chr17-72917537-4	chr17	72917042	72918042	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-763.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	7.33371921270268	7.17016738282526	6.97315602073086	7.36232915323033	7.5924032296581	7.19257158131007	0.337192188334787	0.191027261539243	0.577558823376959
Merged-chr1-36075487-2	chr1	36074987	36075987	+	796.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	7087.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.43133742757348	5.53692492346814	5.64860793337436	5.74220025199065	5.70300908368534	5.54419049754362	0.253931621083229	0.430056711082598	0.796088071540842
Merged-chr6-83502420-4	chr6	83501944	83502944	+	993.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4525.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	7.17004307695963	7.20581300052855	7.03363254469392	6.96381600957519	7.33062956075036	7.09144520064786	0.0034082190101688	0.989201721903777	0.997534219501968
Merged-chr19-16142193-2	chr19	16141693	16142693	+	594.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9362.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	5.857312060594	5.86267302469196	5.95978518648367	5.92528293469254	6.02053565009769	6.02057513001943	0.175242207478292	0.549040771348109	0.860169049738739
Merged-chr8-70943419-4	chr8	70942912	70943912	+	904.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MurERV4_19-int|LTR|ERVK	12097.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	2.96280930535616	2.64917399784966	2.84488266497687	2.96810440436784	2.79384708878578	3.26048426498364	0.904028398907786	0.225866942293014	0.620790596836024
Merged-chr3-87017234-4	chr3	87016747	87017747	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17907.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	6.51351657735918	6.60402817617329	6.48230260672052	6.87024881352383	6.74860638041856	6.54190757049257	0.310709661149406	0.239548125379143	0.636469662373399
Merged-chr10-24163431-4	chr10	24162934	24163934	+	635.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14117.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	5.24306160604545	5.29410087323978	5.40712213938605	5.50560933110522	5.35110658739137	5.28477319090962	0.148680056438255	0.663132686274618	0.907039675168715
Merged-chr17-36271819-4	chr17	36271321	36272321	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	183.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	8.7209918479996	8.83688408852897	8.31878150106672	8.696455207657	8.59446270787391	8.38650233526227	-0.113457552949828	0.634988490502604	0.896393504194572
Merged-chr1-183979990-4	chr1	183979494	183980494	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	54004.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	6.96671043634985	7.2362931752442	7.11401005650824	7.18685196564308	7.38724635215736	7.17173491302154	0.220115066271709	0.37028708109319	0.75468690157258
Merged-chr3-19955745-3	chr3	19955250	19956250	+	800.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1304.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	3.00229655865402	2.98645045328826	2.92727420958736	3.2259967040582	3.05692392111613	3.34892555810422	1.0463233449937	0.118016469158842	0.458810183888657
Merged-chr15-96474850-4	chr15	96474400	96475400	+	796.93335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14057.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	4.91174205155039	5.10632610194403	4.65706238372599	4.28468501504948	4.62634113235783	4.59856846611834	-0.931388867102904	0.0329925368141236	0.221408420294346
Merged-chr16-91611426-4	chr16	91610923	91611923	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7576.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	6.89493681945882	6.54859929427064	6.38222404154007	7.49490910198953	7.7842023800856	6.78374616883161	1.20258117163433	0.000372454594956111	0.00832201985421808
Merged-chr13-52623694-2	chr13	52623194	52624194	+	925.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	26812.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	3.80525062835613	3.97773934557271	4.66668167371762	3.84837502913834	4.04732299647199	4.48526759225289	-0.137065373910282	0.81628784848082	0.956616423430214
Merged-chr19-9991867-2	chr19	9991363	9992363	+	758.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_011913, intron 5 of 11)	MIR|SINE|MIR	9217.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	2.52945516812772	2.52083566176308	2.70541441675421	2.5677770790069	2.32131143259227	2.53142430762994	-0.660247438648719	0.413946108536057	1
Merged-chr7-5081022-2	chr7	5080522	5081522	+	647.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001252454, intron 1 of 10)	MIRb|SINE|MIR	787.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	6.37738639155104	6.90708990807486	7.29919909294947	7.45498680356273	7.65188986338558	7.3567277201715	0.877445738616256	0.00505049701093887	0.0616280620745272
Merged-chr8-123982463-2	chr8	123981958	123982958	+	785.5	f0_balb.idr|f1_balb.idr	exon (NM_019552, exon 1 of 13)	exon (NM_019552, exon 1 of 13)	664.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	3.85067018966884	3.59192765817096	3.85183707501956	3.59609323640227	3.28334776637121	3.6729736141137	-0.866136693516997	0.141106393833176	0.501878907432089
Merged-chr2-22861441-4	chr2	22860953	22861953	+	968.166626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-34069.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	4.55152818969723	4.60159826049288	4.42489853053991	4.85102048416246	4.56090753709964	4.6232307090101	0.358276357912544	0.396811392805393	0.773765492504153
Merged-chr8-128694689-4	chr8	128694201	128695201	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010578, intron 1 of 15)	MTC|LTR|ERVL-MaLR	9047.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.78886464160536	5.63509777949047	5.52768913867928	5.8726178157173	5.71903454058344	5.97691614174957	0.344205724346034	0.278501760323847	0.675693502548916
Merged-chr9-89261540-2	chr9	89261040	89262040	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR72_RN|LTR|ERV1	50156.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.84925509450515	5.8921864676141	5.66573457429093	5.79989639713323	5.79397091410994	5.78155258300954	-0.0397161042024867	0.896564686894954	0.975838835430135
Merged-chr13-21721952-4	chr13	21721473	21722473	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-71.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	6.02681238323703	5.90150858732545	6.3228933220503	6.48209414088605	6.42459310753695	6.57479406491928	0.679271676815902	0.0188077233154074	0.155266529763651
Merged-chr17-26469048-2	chr17	26468547	26469547	+	966.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	39425.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.49195028877879	2.54995029547644	2.76408894585345	2.41781121203576	2.27952494714495	2.65973971296966	-0.882778352531915	0.292795976752457	1
Merged-chr8-13160398-2	chr8	13159898	13160898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010684, intron 1 of 8)	B1_Mur2|SINE|Alu	1237.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	7.87785115539267	8.05965034785661	7.46131822164189	8.13869886239455	8.42390046620507	7.68482683618093	0.418692560585245	0.151222610267521	0.518506648409409
Merged-chr16-36720393-4	chr16	36719908	36720908	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	26430.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.10007705212733	3.04482825385025	3.2678974019881	2.82384613324724	2.9306833709926	2.94544417902303	-1.1199546119803	0.104857531666215	0.432054705729044
Merged-chr1-152538172-2	chr1	152537672	152538672	+	881.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	87045.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	4.67959759230278	4.56669966992469	4.86579010012053	4.50759537675858	4.67204857660435	5.09260305701362	0.156438596510201	0.719602059432747	0.927917795122043
Merged-chr7-73593076-4	chr7	73592544	73593544	+	888.0125119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-34649.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	5.77150625907587	6.0526489561214	5.9475596979447	6.06588064897634	6.29673815121997	6.26663914477602	0.488515485845328	0.100637548395382	0.423170146377512
Merged-chr10-93452381-1	chr10	93451881	93452881	+	1000.0	f1_balb.idr	Intergenic	Intergenic	-1015.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	3.60729231099809	3.73909452344802	3.71485386463049	3.61543221100974	3.7684152452441	3.88250091877293	0.231095665448574	0.668713530415529	0.909351606315111
Merged-chr7-126928142-2	chr7	126927642	126928642	+	759.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-737.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	4.25858944677761	4.65837067719697	5.21852388730295	4.61317995869104	4.68736244297138	4.8084994999501	-0.140022372181444	0.77382120423405	0.944186409608656
Merged-chr13-46728036-4	chr13	46727524	46728524	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-175.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	8.38929643711282	8.50688205348637	8.28203200305869	8.16863180952873	8.22016640127394	8.26278369289219	-0.25576611469148	0.216898277833197	0.610529941246584
Merged-chr9-73001078-2	chr9	73000578	73001578	+	714.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359295, intron 4 of 9)	B1_Mur2|SINE|Alu	15574.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	4.74621879523667	5.01454763375359	4.99867399302686	4.60105641079419	4.53447901636826	4.8171753723437	-0.637053736735925	0.117657701287372	0.457907484037401
Merged-chr1-78678663-3	chr1	78678153	78679153	+	898.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028817, intron 2 of 15)	ORR1C2|LTR|ERVL-MaLR	20213.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	3.14393563147034	3.12083468185162	3.55866509902406	3.14416344874968	3.05694625941519	3.15213637361786	-0.694802301220413	0.294633810334607	0.691490357118739
Merged-chr2-157840743-4	chr2	157840251	157841251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-73902.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	4.79971840353809	4.89856116873531	4.92713961338305	4.91116495292159	5.05748269834895	5.1275487121854	0.348482827024532	0.354562816380607	0.741733823391516
Merged-chr11-94374402-2	chr11	94373902	94374902	+	997.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029600, intron 4 of 30)	intron (NM_029600, intron 4 of 30)	18574.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	3.3676159797091	3.18314272833618	3.90091033875725	2.87203986249475	2.99211915014685	3.7070230523601	-0.901401888460438	0.55111522642201	0.860990138377474
Merged-chr5-65696143-2	chr5	65695643	65696643	+	893.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081321, intron 2 of 31)	intron (NM_001081321, intron 2 of 31)	1713.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	3.30945463933857	3.27819574908955	3.39125900050883	3.41994378528012	3.16008739898049	3.23565905804423	-0.198966603874163	0.747415081024149	0.936609307885736
Merged-chr10-60739812-4	chr10	60739338	60740338	+	892.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	12944.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	4.9136437745726	4.59333040337634	5.1584492569817	5.09912504644187	5.03910842996796	5.22170913224341	0.474635917481605	0.236258097571126	0.632649498304448
Merged-chr1-172306369-4	chr1	172305861	172306861	+	852.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6006.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	3.7388040626876	3.62030222703344	3.45835891670392	3.57141880362222	3.10428400718141	3.2301074050416	-1.11950822860526	0.0830967442413271	0.381479387301095
Merged-chr17-46342493-4	chr17	46341989	46342989	+	840.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14466.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	5.39477303307974	5.29861158641247	5.56890230892186	5.33362482092696	5.847550826525	5.8524909801655	0.538893207343194	0.129774451986438	0.481872131772394
Merged-chr11-61652683-2	chr11	61652183	61653183	+	666.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-638.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	5.62040296269671	5.47865066873541	5.0972825744543	5.81703850208555	5.94445631816705	5.62844386008412	0.700536723079181	0.0472151279669535	0.275222167327609
Merged-chr16-13254286-2	chr16	13253786	13254786	+	883.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B3|LTR|ERVL	-2195.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	2.37800914926162	2.23898694408302	2.33098157444074	2.5363528247553	2.29948518037351	2.53578103508216	0.905669038935214	0.280574041929279	1
Merged-chr8-124020545-1	chr8	124020045	124021045	+	758.0	f1_balb.idr	intron (NM_133966, intron 1 of 4)	B1F|SINE|Alu	511.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	6.00236350780941	6.3057257870044	6.1613428336699	6.3254811301797	6.2103277045148	5.86719136081525	-0.00905804564905606	0.976485533938282	0.994723308989508
Merged-chr6-38690779-4	chr6	38690274	38691274	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	27705.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	6.39597996406488	6.60006603231179	5.8697309104696	6.04355484651368	6.04772523820558	5.73776213069003	-0.638179640861827	0.0587517296044901	0.313683199446654
Merged-chr11-60774576-2	chr11	60774076	60775076	+	722.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2789.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	5.93855465734867	5.64935401756397	6.19254164545467	5.58185795651961	5.9420369195215	5.89090355214505	-0.210328101581099	0.533672419060196	0.85253162296083
Merged-chr3-51226102-2	chr3	51225602	51226602	+	657.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_009834, intron 1 of 2)	B1_Mur2|SINE|Alu	1655.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.20151440436596	3.35726189327737	3.2011687959006	3.24559384770933	3.18927437953629	3.44000595902133	0.125685956878234	0.8405695113094	0.962819298477451
Merged-chr11-52072055-4	chr11	52071551	52072551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-26773.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	4.02618579882393	3.6243082527369	3.66391126302789	3.95751616691024	3.56865535976076	3.50473597355237	-0.304023353424679	0.60761338870771	0.884628619253764
Merged-chr2-14230051-5	chr2	14229495	14230495	+	843.1666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	581.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	7.1023551138123	7.40620806326119	6.8885839266209	7.3927927908944	7.70033883587989	7.2226310067176	0.448607812297826	0.106846375316089	0.436347896711652
Merged-chr2-126708625-2	chr2	126708125	126709125	+	615.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	1297.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	5.6293142134767	5.59548963424567	5.63145353112546	6.11624463036918	6.07333897044549	6.02058176442676	0.809529221806818	0.00652571685702625	0.0742806905936306
Merged-chr10-75784051-4	chr10	75783538	75784538	+	914.80835	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001358778, exon 5 of 5)	3' UTR (NM_001358778, exon 5 of 5)	-2616.0	NM_001346523	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	2.06121316791236	1.95892393227609	2.07457106812231	2.2013828860278	1.99806885186306	2.28242580134754	0.986260838542461	0.285975328079255	1
Merged-chr2-34803701-2	chr2	34803201	34804201	+	922.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_013890)	TTS (NM_013890)	-3789.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	5.10496920340587	5.05997293931282	5.33860687559791	5.14624338672242	5.33072531490887	5.34195690963622	0.229464147149764	0.521280960663573	0.846938187698154
Merged-chr9-123528847-5	chr9	123528285	123529285	+	834.266663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-968.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	6.76991572047829	7.06391962397605	7.00028056743469	7.13138862193477	7.15088667470973	7.35418231677557	0.39563198083813	0.11505046165959	0.452801315520848
Merged-chr5-140611202-4	chr5	140610693	140611693	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3852.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.93425347470177	5.98860077252759	6.18310688001462	6.11406952351862	5.47296800173487	5.8697759361749	-0.340777733345768	0.315540316578889	0.709834518424648
Merged-chr15-66848251-2	chr15	66847751	66848751	+	879.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009375, intron 46 of 47)	intron (NM_009375, intron 46 of 47)	-16422.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	3.13755466950527	3.16946976820962	3.24742193354408	3.22021329383516	3.07818088959637	3.26264528672304	0.00578780626078953	0.992691633916537	0.998523796268552
Merged-chr6-115593419-2	chr6	115592919	115593919	+	983.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001101431)	promoter-TSS (NM_001101431)	-843.0	NM_001101431	70291.0	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	2.70545839055035	2.76480540719653	2.84623392829268	2.81963506539232	2.91235368730927	2.97785461139299	0.672886501037737	0.341211300472346	0.730686899066382
Merged-chr9-25504290-4	chr9	25503805	25504805	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22708.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.02479999748332	5.91536358156974	5.78659004735632	6.14305449235016	6.19445920866675	5.55801610347578	0.162722198864834	0.629321442290602	0.894177193823197
Merged-chr11-115628253-4	chr11	115627766	115628766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	29.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	6.28901755818277	5.90021526208258	6.13580026943518	6.56960614586084	6.46030642957377	6.03565120978744	0.444020118646304	0.157313838207976	0.528495229716136
Merged-chr8-94386915-2	chr8	94386441	94387441	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	512.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	9.39416185547249	9.6510267382736	9.10246199652757	9.2171967502583	9.52408666205105	8.9743032860262	-0.19309610828886	0.44478693529028	0.80451094486883
Merged-chr1-53787539-4	chr1	53787045	53788045	+	911.083374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2330.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	4.9248816944356	5.41729362656759	5.34629180963564	5.20218992064102	5.09090597914549	5.74660092264539	0.241713581562855	0.555259787455205	0.863191483122339
Merged-chr8-78508467-4	chr8	78507979	78508979	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029736)	promoter-TSS (NM_029736)	89.0	NM_001358975	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	8.62174046882426	9.09212418690169	8.49284761521205	8.6669825298618	8.87612763202199	8.26598837978002	-0.184318907986286	0.499820493604988	0.834752993293802
Merged-chr16-13667260-2	chr16	13666760	13667760	+	688.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358453, intron 2 of 22)	intron (NM_001358453, intron 2 of 22)	910.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	3.52790018672028	3.62788049185151	3.97829600181361	3.93898463573441	3.61272926433745	3.48003123076446	-0.0804044327250361	0.892100222171612	0.974942585822634
Merged-chr1-54840258-2	chr1	54839758	54840758	+	551.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	86129.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.96118221712261	3.90394975294884	3.85458281135619	3.88134361077076	3.5756918356262	3.87395072994324	-0.42367730001206	0.425174046452709	0.792988748085012
Merged-chr2-152736226-4	chr2	152735707	152736707	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010495)	promoter-TSS (NM_010495)	-44.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	7.05114078468216	7.27051917677244	7.18681054213156	7.32937659236016	7.27714804384728	7.14550770416512	0.125409885251247	0.598714974702267	0.880808927175713
Merged-chr3-95281386-2	chr3	95280886	95281886	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173347, intron 1 of 7)	CpG	690.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	7.05488518631026	7.15833183063507	6.76979467634442	7.0304877525692	7.3375638103773	6.71177873305654	0.0805512410539565	0.780517704632505	0.946078518476608
Merged-chr11-3895232-4	chr11	3894744	3895744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026150)	promoter-TSS (NM_026150)	4.0	NM_173745	75219.0	Mm.32588	NM_173745	ENSMUSG00000047205	Dusp18	4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding	5.95366166571103	5.57259849913104	4.82922677156308	4.78391524789952	4.82337329172304	4.81236743378482	-1.50181478422048	0.000809273394234766	0.0153040955880651
Merged-chr6-115665216-1	chr6	115664716	115665716	+	542.0	f1_balb.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	10672.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	4.73561813644874	4.89294444468301	4.82412627990525	4.40444025346605	4.33687644712913	4.45024553701317	-1.04063399674696	0.0125273346251623	0.117782424801187
Merged-chr13-58385042-4	chr13	58384538	58385538	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_027335, exon 1 of 4)	exon (NM_027335, exon 1 of 4)	187.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	6.45558955571419	6.82642253894827	6.89412280062236	6.64215929443897	6.6375272299271	6.47951768111734	-0.224374683449764	0.419606022580685	0.789101346301465
Merged-chr19-24996935-2	chr19	24996435	24997435	+	610.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2594.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.57398155320323	5.38086398372972	5.58185602244857	5.68398706193837	5.74798430958705	6.15043138671234	0.651280912721574	0.0528100296334798	0.29413077784976
Merged-chr10-99457833-2	chr10	99457333	99458333	+	804.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-151338.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	2.69379171512456	2.70978150967032	2.78352409419004	2.78762658710096	2.57447532688151	2.60451663122928	-0.377234249556595	0.614807359553549	1
Merged-chr8-13660452-4	chr8	13659933	13660933	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	17154.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.0466578372368	6.96466191973154	6.3694164244253	6.6441306780568	6.61491149643212	6.1630589579904	-0.529067877989191	0.0997349066909018	0.421136841555491
Merged-chr19-44389174-2	chr19	44388669	44389669	+	857.0	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	18540.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	8.1604378308638	7.961251112514	7.54427528242919	8.13317121525441	8.12747655334706	7.28583926715539	-0.0058156688885708	0.985317571482329	0.99687881628712
Merged-chr17-31005717-2	chr17	31005203	31006203	+	783.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	MLT1C|LTR|ERVL-MaLR	51020.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	4.92360996963384	4.87766998018861	5.23961565136098	5.22520135442199	5.407628057458	5.55761845603216	0.795406015559541	0.0315307218743949	0.215102755245113
Merged-chr18-12940507-3	chr18	12940011	12941011	+	779.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	1330.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.31172501562523	4.41168628798326	4.14839279341609	4.61828485646795	4.26847172364468	4.21877374126218	0.212202294413702	0.652524753883533	0.902986290245403
Merged-chr3-127789934-4	chr3	127789426	127790426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	54.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	8.22504037752354	8.02716823322092	8.04904450015259	8.13334589549472	8.23563796478777	8.1807443639221	0.112432128825424	0.593698498082456	0.878589727861081
Merged-chr19-6403164-2	chr19	6402664	6403664	+	798.583374	f1_balb.idr|f1_c57bl6.idr	intron (NM_011242, intron 4 of 16)	intron (NM_011242, intron 4 of 16)	2581.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	2.97518272751342	2.74937315014603	3.49630004284643	3.20296518894723	3.01551900141603	3.20253212057419	0.132505830198847	0.859478371580111	0.967340407715919
Merged-chr13-102656501-2	chr13	102656001	102657001	+	921.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-37046.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	3.54454294335235	3.59947904293132	3.7735357684333	4.51395623736436	4.65829014178031	4.70205293191227	3.04822213678335	1.32610884796214e-08	1.16518336875642e-06
Merged-chr8-57652593-8	chr8	57652040	57653040	+	989.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040698, intron 1 of 3)	CpG	515.0	NM_001167981	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	7.21510363762759	6.85911470388586	6.56626961437519	7.30042137482369	6.77830727182813	6.86023344542859	0.130039416284743	0.673572890998889	0.911535196861653
Merged-chr9-50479112-5	chr9	50478641	50479641	+	820.366638	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15384.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	3.96572734630102	3.44252007250522	3.46350532899507	3.53447198834608	3.59739429333591	3.64789171918534	-0.211248494442221	0.725564471904864	0.929698613727862
Merged-chr11-5792676-4	chr11	5792165	5793165	+	994.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4182.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	4.63446721127446	4.66167743195226	4.72544255784216	4.62796390194704	4.68740538724838	4.75275362139958	0.0392022839260861	0.922144268018697	0.982542868764899
Merged-chr12-3791233-3	chr12	3790762	3791762	+	825.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15718.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	4.78954651102669	4.95965523648456	5.41806453155178	5.60745087462662	5.43092354960635	5.66602017786453	0.995305738500596	0.00928185466327533	0.0955728947929481
Merged-chr11-114927364-4	chr11	114926873	114927873	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7013.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	7.73823564189001	7.20347453304355	7.46882831142881	7.31577600140759	7.55584598678633	7.4749406403459	-0.0530285876851714	0.838490595997071	0.962518552953479
Merged-chr5-21374803-2	chr5	21374303	21375303	+	642.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008013, intron 1 of 1)	MIRb|SINE|MIR	2130.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	3.77243853281233	3.6410884552729	3.92854371979993	5.11212926156921	4.94160445598076	4.22414566739649	2.89641850429875	1.09938825340123e-07	7.77753999053313e-06
Merged-chr5-21735794-4	chr5	21735292	21736292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1368.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	4.23914969842949	4.26011138598178	4.13992570579133	4.22807071203625	4.64245371314427	4.39480735417981	0.588618572320997	0.206313191401138	0.596860720050967
Merged-chr2-129199895-2	chr2	129199395	129200395	+	999.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001159593, exon 2 of 6)	exon (NM_001159593, exon 2 of 6)	1122.0	NM_001159593	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	3.84970493057398	3.63767754812401	3.56630133931443	3.87789349064771	3.72669528345831	3.80093623002162	0.345923608871676	0.524937867076597	0.84884700169621
Merged-chr2-103965281-2	chr2	103964781	103965781	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-4276.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	3.42736899286288	3.7338342328785	3.76375055489	3.39516316800147	3.75005613135165	3.46276818462965	-0.326145074081268	0.587812505386103	0.876090509043824
Merged-chr10-43751080-4	chr10	43750582	43751582	+	915.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	4924.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.87299810237145	4.900489386677	4.64680605477332	5.13577610902134	5.09190628680606	5.09797805341767	0.620097235440487	0.103245226978853	0.428352196127392
Merged-chr15-100081327-4	chr15	100080823	100081823	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	42659.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	7.46964392232431	7.50926473390907	7.31732325003774	7.44389287855945	7.53077796575595	7.04455672477667	-0.104201116846563	0.682042697196978	0.914930546030715
Merged-chr14-65890881-3	chr14	65890349	65891349	+	992.611084	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	53547.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	3.08942327713551	3.11403089953409	3.13756112069106	3.66445594976246	3.71990184460888	3.39655841855711	2.01322263892467	0.00159906248954256	0.0260126669853093
Merged-chr3-138026487-4	chr3	138025975	138026975	+	946.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	40913.0	NR_037975	329763.0	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	3.56020448604867	3.19345987429501	3.35056995311937	3.03400753731281	2.72425742274492	2.80675939206832	-2.51848265835354	0.00115551000017398	0.020139856743711
Merged-chr3-109251980-4	chr3	109251490	109252490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-88693.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	5.29794427474824	5.56114105327722	5.21498148605863	5.58043140763382	5.47166423278965	5.66738139495665	0.368820417317715	0.283442840297562	0.681376161050487
Merged-chr3-16198317-2	chr3	16197817	16198817	+	869.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358042, intron 2 of 3)	RMER17A2|LTR|ERVK	15152.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	2.26631415035284	2.31132383264275	2.26332876805143	2.41079236487414	2.23605663939217	2.89146465216363	1.56921415207789	0.0821920913362582	1
Merged-chr2-146416516-1	chr2	146416016	146417016	+	558.0	f0_c57.idr	intron (NM_001033348, intron 16 of 40)	intron (NM_001033348, intron 16 of 40)	95488.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	3.15363995495892	3.28116449035493	3.1932102143271	3.48647984712388	3.43092549042805	3.49321724374952	1.01808980193047	0.0940773433937247	0.408560072801142
Merged-chr14-75066106-4	chr14	75065602	75066602	+	885.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	50075.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	6.33441811497696	6.31379241140713	6.30192166041911	6.13164859593275	6.40697438429699	6.49056784261975	0.0529579050617752	0.850330026852694	0.964858782843783
Merged-chr1-86503575-4	chr1	86503037	86504037	+	908.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-23020.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	5.03889508617557	4.97583496836714	4.9175961424162	4.82671910048115	4.84756309983757	5.01787088667243	-0.194113706887843	0.607284495158341	0.884536703715148
Merged-chr8-22477441-3	chr8	22476878	22477878	+	942.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-499.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	7.77323795414981	7.80926889951402	7.49658478642273	7.69207337249781	7.80315234751199	7.40152345978163	-0.0794657568309859	0.746331027084522	0.936300236930265
Merged-chr17-50996061-3	chr17	50995541	50996541	+	739.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	163337.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	4.97533928687088	5.275737251278	5.29601695976131	5.2350487511273	5.56470782654448	5.50575623451096	0.514423911449568	0.155160529185728	0.524671732128502
Merged-chr8-85432878-4	chr8	85432373	85433373	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025722)	promoter-TSS (NM_025722)	-32.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	6.32736907837486	6.05529414189611	6.74124575085337	6.65183508707256	6.25946241161218	6.21665346341303	-0.00425419906970753	0.989734281089626	0.997611022725407
Merged-chr15-59809166-1	chr15	59808666	59809666	+	966.0	f0_c57.idr	Intergenic	Intergenic	-14207.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.69649312275521	7.54358345961171	7.60490648995501	7.68761440410642	7.95834267364214	7.50235947486668	0.177434828063453	0.463114036632094	0.815662635550835
Merged-chr17-45753790-2	chr17	45753290	45754290	+	697.166687	f1_balb.idr|f1_c57bl6.idr	intron (NR_152153, intron 2 of 4)	IMPB_01|Satellite|Satellite	19284.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	3.48705258517115	3.37360140107901	3.1598824489182	3.30399046989788	3.15926435199703	3.29312420153798	-0.41445644623645	0.51070660976123	0.841033023631175
Merged-chr11-97993964-2	chr11	97993464	97994464	+	997.375	f1_balb.idr|f1_c57bl6.idr	intron (NM_207231, intron 3 of 5)	intron (NM_207231, intron 3 of 5)	2209.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	3.38117752832984	3.42348472381302	3.41476712005721	3.52853819281221	3.32522213716616	3.31453055359728	-0.0489115971059651	0.934430048970904	0.985707838096286
Merged-chr7-79831777-3	chr7	79831287	79832287	+	886.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008486, intron 15 of 20)	HAL1|LINE|L1	16423.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	3.89208378482287	3.72923783533082	3.85170735074489	3.64323756897204	3.51137434138865	3.61120551818131	-0.812331026568152	0.135634135863906	0.492341832783394
Merged-chr7-35093829-3	chr7	35093330	35094330	+	780.111145	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT2B4|LTR|ERVL	-25463.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	2.68762662116919	2.66649398471536	2.6788215067341	2.35316334897141	2.53168740086982	2.49908546601634	-1.26599619559906	0.118878643258635	1
Merged-chr5-142905981-4	chr5	142905496	142906496	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 1 of 5)	CpG	758.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	6.90787251978045	6.50607222380235	6.50013183983576	6.68771508363282	6.63280572997525	6.79078905057706	0.0656612330775805	0.812917152724584	0.955841430155734
Merged-chr2-93459821-1	chr2	93459321	93460321	+	1000.0	f1_balb.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2030.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	6.38756278585707	6.00582357378759	5.51477325977495	5.79752795486514	5.62932839923537	5.41523571225067	-0.713581088565973	0.0570116354776716	0.307900575376523
Merged-chr2-32536998-4	chr2	32536495	32537495	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	1636.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.24612593645118	6.45336262011411	6.50870540799458	6.26851669419238	6.65782393075222	6.46199258276485	0.123487126166458	0.665827617121482	0.907920503949149
Merged-chr17-26570036-2	chr17	26569529	26570529	+	779.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	8517.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	3.76047707118935	3.74750528042285	3.55485815802683	3.5136144208168	3.32944075630196	3.57130596492026	-0.819614703240155	0.154510514069946	0.523836159179075
Merged-chr11-69134458-4	chr11	69133966	69134966	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011786, exon 10 of 15)	exon (NM_011786, exon 10 of 15)	8089.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	5.61500748781308	5.65645198411764	5.75467035885363	5.57960745325474	5.51732471245973	5.54991027729884	-0.231895274580025	0.463128746326515	0.815662635550835
Merged-chr1-164248913-4	chr1	164248413	164249413	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-133.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	6.88272666397123	6.93944829946638	6.46651890428843	6.77310708104983	6.92395223968388	6.65385905845956	0.006014545101628	0.982760648534242	0.996084390562607
Merged-chr9-59550874-2	chr9	59550374	59551374	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	B4A|SINE|B4	11334.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	5.53531664506862	6.09138938499387	6.15515830562186	5.73128197049575	5.93032912366532	6.00562360910575	-0.103655856799724	0.762043886214332	0.941406354590576
Merged-chr6-83032893-4	chr6	83032433	83033433	+	910.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001291799, exon 2 of 5)	exon (NM_001291799, exon 2 of 5)	538.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	7.64071350389248	7.86475365198188	7.49724123080583	7.67250423521073	7.7261999177472	7.40335514840081	-0.0978833471870328	0.688506667717361	0.9172299553909
Merged-chr14-77035903-1	chr14	77035403	77036403	+	987.0	f1_balb.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	714.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	6.24441650496745	5.99230455898333	6.10840276323765	7.36958475101668	7.44391397074079	7.21297398306236	1.92820105615707	1.9738029418509e-13	4.33340884394537e-11
Merged-chr11-106091372-2	chr11	106090872	106091872	+	619.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 1 of 15)	intron (NM_011947, intron 1 of 15)	6470.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	5.03898102875605	4.51342642550278	4.95845330199915	4.99340747504099	4.52677468510449	4.60051475340122	-0.296600951971239	0.508535095914852	0.839818423824339
Merged-chr10-80291835-2	chr10	80291325	80292325	+	548.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-606.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	3.47251505343712	3.32799391571122	3.7669813288095	3.30254700413605	3.65822725331015	3.64025192141144	0.060024665104532	0.921985437733116	0.982542868764899
Merged-chr16-15890673-4	chr16	15890181	15891181	+	869.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355731, intron 18 of 18)	intron (NM_001355731, intron 18 of 18)	3395.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.87422948832304	6.09144296025635	6.2050929846627	5.89969984872938	6.10229099055257	6.20532109834251	0.0249688824469251	0.934191194384986	0.985707838096286
Merged-chr11-101658481-4	chr11	101657999	101658999	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7042.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	8.04927763712019	7.89892936501733	7.53280952143428	7.96719894591289	8.19648426711224	7.72715465909067	0.18873145933594	0.469156022677648	0.818913936718213
Merged-chr1-136635952-4	chr1	136635490	136636490	+	928.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11089.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	6.32351409781429	6.00509694160096	6.26080217128818	6.29690616831957	6.64234065537074	6.1516475374495	0.318844864803603	0.29855691514532	0.695318064134901
Merged-chr12-84969141-3	chr12	84968665	84969665	+	960.388916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1721.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	4.81781018651903	4.66732685382473	4.66774070897923	5.09573733640999	5.16471129764444	5.109496851771	0.883365198414307	0.0199646095952314	0.161204777797187
Merged-chr6-38434851-4	chr6	38434364	38435364	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177185, intron 1 of 16)	CpG	939.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	6.62047167038314	6.43738599155719	6.41064720614134	6.47551600154337	6.53123578030026	6.5069052777514	0.0135408166301625	0.959225713560504	0.990174309444982
Merged-chr17-35916632-7	chr17	35916164	35917164	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163818)	promoter-TSS (NM_001163818)	-224.0	NM_001361454	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	9.08595133007346	9.02572831548923	8.34317659533049	8.66531914279558	9.19131703380008	8.23626512224919	-0.135381588594669	0.672486203291826	0.91086468829214
Merged-chr10-60280517-4	chr10	60280046	60281046	+	765.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	2918.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	7.18949942657127	7.23227257529455	7.29765623587173	7.62459291049014	7.99923664905596	7.22246547661494	0.626908333066592	0.0246606554791116	0.185446346236414
Merged-chr16-92693354-4	chr16	92692854	92693854	+	861.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3975.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.06549829046413	5.0634852689291	5.00278687627609	4.75475337636948	4.85647942486715	4.68409842215202	-0.599351199883819	0.117526344313261	0.457695968249454
Merged-chr3-15850096-3	chr3	15849587	15850587	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1600.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	2.97214276474979	3.39945801109825	3.05382185899786	3.91127464309457	3.4158986957227	3.86423845733871	2.22127400242928	0.00234351815702392	0.0348586805165618
Merged-chr17-26750127-4	chr17	26749639	26750639	+	931.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-30940.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	4.24603337530226	3.91876332283189	4.70192223116481	4.27641080795665	3.9297979360254	4.69761126985186	0.0283620949514288	0.959790680866309	0.990242512723989
Merged-chr7-45080104-4	chr7	45079730	45080730	+	897.7083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11983.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	4.17078342575224	3.62309677904978	3.74675733161713	3.42270710334288	3.61383570514961	4.01105003458765	-0.547514143410884	0.370692377684414	0.754976657994487
Merged-chr8-84420162-1	chr8	84419662	84420662	+	603.0	f1_balb.idr	intron (NM_001252060, intron 1 of 47)	Tigger5b|DNA|TcMar-Tigger	4798.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	6.54384387360524	6.36792914279372	6.59929779446006	4.15540327799721	3.8796622791245	4.47394202830618	-6.26005029905551	9.73260995796146e-22	8.71117749758257e-19
Merged-chr4-144898228-5	chr4	144897641	144898641	+	919.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	5004.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.94549729868223	6.34421927883012	5.85583363675465	5.97788419414157	6.18339885569363	5.86623475556938	-0.0894204777081083	0.782061571263379	0.946388527339532
Merged-chr9-106685106-4	chr9	106684552	106685552	+	835.349976	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_104459, intron 1 of 4)	intron (NR_104459, intron 1 of 4)	764.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	6.05724640438106	6.03187743384897	6.00700932588698	6.12903000573575	5.97193213828206	5.76824878841962	-0.106245136895473	0.722328932346577	0.92872455507539
Merged-chr4-135353676-3	chr4	135353138	135354138	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-424.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	7.62987818802324	7.58332152759451	7.75533317615343	7.53613085936286	7.9263201120903	7.74374161577778	0.137166831124238	0.560913591545367	0.865331098437164
Merged-chr2-32963023-2	chr2	32962503	32963503	+	885.25	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_002898)	promoter-TSS (NR_002898)	-298.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	5.14568749104833	4.6218155613817	4.90387839265909	5.01791627413389	5.20238779608008	4.96965772033427	0.35149710679298	0.38584676089167	0.766674506964127
Merged-chr9-105779146-1	chr9	105778646	105779646	+	578.0	f0_balb.idr	intron (NM_172927, intron 6 of 7)	intron (NM_172927, intron 6 of 7)	30502.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	3.3810843878229	3.17293305148972	3.19759979703964	2.68030754581811	2.63120166523073	2.84739296287129	-3.0347760690591	0.000236003755050525	0.00572518963563969
Merged-chr2-166650636-4	chr2	166650129	166651129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	63203.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	5.59311544003545	5.78840950501406	5.47757691059864	5.52604012120676	5.48467934120488	5.35337953753807	-0.326428319497992	0.32615405216449	0.718556399216867
Merged-chr9-40757936-4	chr9	40757432	40758432	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43341.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.98269095183171	6.10081262839321	6.18887919227522	6.38145827406249	6.67222421730976	6.20705161576371	0.596920052902069	0.0437456709598908	0.262967041556899
Merged-chr5-23434418-6	chr5	23433902	23434902	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	-27.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	8.91617664204335	9.02411339757999	8.74981701567325	8.86204831728869	9.03012997547009	8.92295485067372	0.0500322527906204	0.806570018939309	0.954218903443647
Merged-chr10-98917250-6	chr10	98916794	98917794	+	799.944458	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	2142.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.68576580511918	5.79349041048212	5.356581624764	5.6409593731236	5.89391080556357	5.63590348322073	0.182384708803957	0.589441197822209	0.876881835468685
Merged-chr8-82997066-4	chr8	82996569	82997569	+	949.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	133713.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	4.12834743298365	3.92324728484741	4.06432669573913	3.87598891885883	3.68130431857158	3.94246613299963	-0.651428090697871	0.205348663394153	0.596047563330878
Merged-chr10-127621802-4	chr10	127621330	127622330	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-682.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	8.08333946063877	7.81690184391335	7.99510145525226	7.91057740086803	8.02874195608674	7.9695115974716	0.00382616048987345	0.986030107736455	0.997029933218313
Merged-chr8-70212563-7	chr8	70212007	70213007	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-226.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	7.24659077607498	7.17930514751241	6.96956497886539	7.60793248929598	7.69639902931524	7.34802691491967	0.623550317491212	0.0115021806458458	0.111029402225005
Merged-chr10-86991416-2	chr10	86990915	86991915	+	793.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138673, intron 3 of 68)	B3|SINE|B2	16527.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	6.36491093869061	5.80748572066308	5.42838009154513	6.17349647297538	6.22872901127469	5.68682225748425	0.207764913875245	0.597302822686348	0.880338197358751
Merged-chr13-89378569-3	chr13	89378069	89379069	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-162067.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	3.91333265638669	3.90383012012038	3.96821908801669	4.54503012350917	4.81640614971195	4.74447390353244	2.12588868654466	6.15403517281399e-06	0.00026435981345354
Merged-chr13-93187998-4	chr13	93187499	93188499	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	4418.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	6.25516846859524	6.14172171567511	6.0668319555415	6.56135857595434	6.81771190389534	6.47942406692901	0.775120824089151	0.00580227208975651	0.0680760654321009
Merged-chr8-119848016-4	chr8	119847492	119848492	+	924.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7413.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	4.17545797028651	4.05239568671696	4.14310280514908	4.39278419344635	4.42922592108173	4.30518013339777	0.700032679678066	0.124595884058649	0.472297425161941
Merged-chr2-128805396-3	chr2	128804856	128805856	+	868.8333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12947.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	4.54617738472651	4.30120229906414	4.68064361498042	4.42914624896108	4.48531096629259	4.5104837028618	-0.0882893191477293	0.840324092995492	0.962819298477451
Merged-chr14-121915906-3	chr14	121915375	121916375	+	800.277771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-101.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.25567902739969	4.06161778166166	4.05412425685315	4.40971732138035	4.10961846518653	4.74460933155555	0.814490335669123	0.10381697723272	0.429621676111812
Merged-chr11-5787777-4	chr11	5787299	5788299	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-684.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	8.45850332250479	8.75681783619709	8.39195105035152	8.6044904797492	8.97831478083992	8.61728309523279	0.276433654612131	0.241089397619477	0.638200827064595
Merged-chr11-82867834-3	chr11	82867292	82868292	+	887.3333130000001	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164569, intron 1 of 7)	Tigger14a|DNA|TcMar-Tigger	2952.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	4.50366009432132	4.54647629003504	4.52854052722888	5.02978881077842	4.88629203536038	4.2602945741775	0.588024237404434	0.205951294993985	0.596518913737799
Merged-chr2-170130040-2	chr2	170129540	170130540	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1180.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.40212753788329	7.51759830641875	7.45418666113111	7.8514113952152	8.13728944945888	7.60274418384463	0.625384039504496	0.0114321367380445	0.110519952794145
Merged-chr6-91440882-4	chr6	91440367	91441367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	-13.0	NR_045980	75787.0	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	7.36309098111871	7.5515350070898	7.30649828187878	7.40478978471021	7.54923769669643	6.76034459422691	-0.175849603804024	0.549289806761655	0.860273914502926
Merged-chr19-40741930-3	chr19	40741359	40742359	+	829.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_009848)	TTS (NM_009848)	82089.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	2.76369250517975	2.51557668769241	2.85080765848947	2.7514621580628	2.37198160838377	2.9236935340606	-0.0714764625399862	0.93207105265923	0.985035285260106
Merged-chr16-11000633-3	chr16	11000127	11001127	+	935.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7506.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	7.71574513544093	7.63955717699511	7.66265805604512	7.81483976626577	7.91092763071133	7.6353039867891	0.180384869310896	0.41744577605767	0.787995193607228
Merged-chr7-125597267-3	chr7	125596734	125597734	+	873.900024	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6195.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.43672074518286	5.70772517014887	5.97636375371431	6.62780132993837	6.71805061570957	6.33655196308339	1.4686933715911	3.13726165802479e-06	0.000147399925488948
Merged-chr3-30995459-3	chr3	30994982	30995982	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	-289.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	6.70322506197699	6.85955758785295	6.60926035189148	6.84312960190896	6.94410597944993	6.63374078445563	0.137694768648448	0.600935926179485	0.881855262262798
Merged-chr19-21652214-2	chr19	21651714	21652714	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	577.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	6.21389916579645	6.30268569101932	6.26956693321901	6.21602735144085	6.47001980745635	6.32956286815611	0.141914064150857	0.60846248253865	0.885006356798728
Merged-chr2-117852122-4	chr2	117851628	117852628	+	959.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30200.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	5.4783913031872	5.45521128133123	5.91803527306452	5.7114167828313	6.06656852563343	5.62821259086036	0.374719131797575	0.285752785382102	0.683240131512535
Merged-chr10-40095553-4	chr10	40095064	40096064	+	897.18335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46690.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.49880326282279	6.53262917156108	6.24258946147829	6.36519144771067	6.29243390021082	6.05616245753953	-0.307443446777031	0.282840591067966	0.68075273348424
Merged-chr2-52941787-4	chr2	52941268	52942268	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83900.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	7.00307257121327	7.26765352132332	7.02362344082856	6.75559656360754	7.26727180035981	6.67129246175839	-0.251633039118611	0.386652801636605	0.767131316757601
Merged-chr12-56336729-4	chr12	56336218	56337218	+	930.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9176.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	5.56221357722165	5.60479994373126	5.7027338728553	5.63629506950159	5.72727994139406	5.71259440706352	0.13650439302457	0.662295892948945	0.90672979351557
Merged-chr4-62663578-4	chr4	62663057	62664057	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-10417.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	7.27010899660935	7.08276677726513	7.44396423333243	7.4156460200815	7.64644045623365	7.63434410259171	0.446498707611012	0.066636375142246	0.337308644776494
Merged-chr9-105459138-4	chr9	105458611	105459611	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359823, intron 7 of 26)	MER47B|DNA|TcMar-Tigger	36022.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	4.89840800320386	4.89531646567032	4.72044781949596	5.07874325679055	5.19837342146088	5.25281951763701	0.702269623548865	0.0606914530384935	0.319101837203376
Merged-chr19-4203052-1	chr19	4202552	4203552	+	581.0	f0_balb.idr	Intergenic	Intergenic	-1449.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	5.12705610699122	5.37073579789095	5.53709808441031	5.18099274313929	5.41179299850255	5.3730035819954	-0.0383461527986117	0.914719964301148	0.980913468864071
Merged-chr11-21033510-2	chr11	21033010	21034010	+	549.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57814.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	6.82344483274441	6.60387925248217	6.59601177931495	6.89810811703487	7.15867374904652	6.84911388812303	0.467260251689987	0.076278612869343	0.363661881603867
Merged-chr16-75909282-4	chr16	75908757	75909757	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023380)	promoter-TSS (NM_023380)	9.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	5.84175288183497	5.55982838793762	5.51668315428881	6.00209931493585	5.693099026262	5.77541430456	0.31596401115222	0.336280994617884	0.726311051846196
Merged-chr2-165881119-4	chr2	165880608	165881608	+	972.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	1170.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.96796378697087	5.56421183448489	6.17360907150409	6.15986838210438	5.92811948066721	6.41719381353533	0.443913088019048	0.19311454634158	0.580267363879138
Merged-chr11-31900761-4	chr11	31900314	31901314	+	738.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	29874.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.06727985065831	4.62928239656051	4.18082097669895	4.74387832955445	4.62861432920405	4.48707923895277	0.744551287212568	0.122965338781065	0.469148413250216
Merged-chr8-69091241-4	chr8	69090730	69091730	+	981.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-2008.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	5.44753882028274	5.42352201627765	5.42248502932781	5.87963608855887	6.08796788354539	5.38978207667523	0.743458546811377	0.0357847316518882	0.232527125814298
Merged-chr18-4804230-4	chr18	4803730	4804730	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8256.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	6.51585577653504	6.78552217739071	6.52346602428809	5.75473000436812	5.72244153578926	6.05637785558592	-1.31025335904295	8.93959983427855e-06	0.000363206163579419
Merged-chr5-105699322-4	chr5	105698819	105699819	+	847.1666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122768)	promoter-TSS (NM_001122768)	-650.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.47517184129744	7.59721380749966	7.22661158965871	7.40772389014469	7.46787582974804	7.17113907407113	-0.128777063861861	0.60401739493984	0.882930966360772
Merged-chr11-54787082-4	chr11	54786557	54787557	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178626, intron 1 of 5)	CpG	646.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	7.72816931261581	7.87573031051338	7.58884470937717	7.49526115777219	7.63556407655507	7.54766985097415	-0.258899720985564	0.255190298336651	0.652246178589957
Merged-chr12-84188442-4	chr12	84187921	84188921	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	5594.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	5.90959191093053	5.60699341464113	5.45079856754044	5.81741438288309	5.33010199936306	5.8654067435925	0.0100446506490623	0.977954590915656	0.994994154947079
Merged-chr2-180710948-3	chr2	180710528	180711528	+	938.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001289651, intron 1 of 4)	intron (NM_001289651, intron 1 of 4)	700.0	NM_001289651	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	6.39929796855369	6.36011764797656	6.52757403910337	6.24204681053108	6.30481530096487	6.55297274606715	-0.0993296943973356	0.719777096586195	0.927960661644538
Merged-chr2-31572654-4	chr2	31572142	31573142	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-9.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	5.99093397752549	6.09239869174719	6.14766861610341	5.64923336989466	5.38250467200628	5.32912756035826	-1.1087482735442	0.00053485151598184	0.0110678748922698
Merged-chr11-34047552-2	chr11	34047052	34048052	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	624.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	8.08176598591974	7.97213340975491	7.87906393347694	8.35894676228255	8.18781116229335	8.02882110109676	0.308974890730873	0.164474732433939	0.539058355772931
Merged-chr14-31376551-4	chr14	31376060	31377060	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39922.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	7.47994432776886	7.08539921096071	6.70911414688752	7.31289407295205	7.51494453825564	6.85238371999054	0.186366010813091	0.560800327432537	0.865300751849844
Merged-chr4-128657044-2	chr4	128656544	128657544	+	754.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	2342.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	4.19712701985485	4.33356515328383	4.37571300012795	3.85786425126647	3.84933251278138	4.23135850714326	-0.924350972994672	0.0628524778705379	0.326089847777261
Merged-chr14-73325953-6	chr14	73325442	73326442	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009029)	promoter-TSS (NM_009029)	-120.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	7.16736345812147	6.95493684306882	7.12299627423272	7.28798563507365	6.72520425371319	7.13136674361932	-0.0288868036394822	0.916471289420083	0.981311839532444
Merged-chr3-100923164-2	chr3	100922664	100923664	+	835.333374	f1_balb.idr|f1_c57bl6.idr	exon (NM_001165953, exon 1 of 7)	exon (NM_001165953, exon 1 of 7)	671.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	4.93353258169672	5.10456314745026	5.04075628994062	4.78646618680951	4.92273061345769	4.68925961900193	-0.473195898506827	0.221940801431384	0.616788023295903
Merged-chr11-68457457-2	chr11	68456957	68457957	+	890.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	25332.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	4.25268019346111	4.42750792552166	4.75426927072675	4.45043652887745	3.89091959284851	4.52472415471352	-0.451978125270874	0.380689893352056	0.762736447051236
Merged-chr6-129494662-2	chr6	129494162	129495162	+	670.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12503.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	3.80227224348212	3.52487192062201	3.25091798237067	3.69464211616487	3.51432220918351	3.67615193451841	0.261544594383454	0.672364582760404	0.910773962627634
Merged-chr3-61413786-2	chr3	61413286	61414286	+	810.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49279.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.22670173692717	6.25825013903329	6.27377334655404	6.45423152579365	6.495481975659	6.42979722813659	0.346702085556087	0.192708377203253	0.579693140399516
Merged-chr5-105732194-4	chr5	105731680	105732680	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178701, intron 1 of 2)	CpG	31370.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.07331980131598	6.8280612727967	6.22579525711533	6.44690237697933	6.14251937864569	5.63870053781656	-1.02785388497248	0.00615628462022306	0.071059579907106
Merged-chr15-98772785-3	chr15	98772285	98773285	+	708.799988	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_011718, exon 5 of 5)	exon (NM_011718, exon 5 of 5)	5365.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	2.52100883111892	2.44669240603308	2.5678182920977	2.292863395757	2.28026269820291	2.51745432894508	-0.953085337995277	0.251977470873118	1
Merged-chr7-19693618-4	chr7	19693143	19694143	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-984.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	6.87473664117456	6.48448539092127	7.10196046237402	7.10314071374291	7.35214455791373	6.92120694485054	0.469763789802325	0.107784363242518	0.438558498615326
Merged-chr10-121476912-3	chr10	121476404	121477404	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-654.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.5957867670117	6.67541629538942	6.89394632750921	5.95219625427943	6.12899664613171	5.87621860697288	-1.18402733730038	4.2649081538688e-05	0.0013835262287217
Merged-chr1-36617027-4	chr1	36616533	36617533	+	788.416687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_201365, intron 6 of 9)	Lx7|LINE|L1	-23701.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	3.34621162079822	3.31458599472178	3.26251475312323	3.38338447721961	3.29063462257087	3.50049868637906	0.306397452660334	0.610724754654907	0.885788604162257
Merged-chr5-122284351-4	chr5	122283859	122284859	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_177242)	promoter-TSS (NM_177242)	-39.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	6.95471880119305	6.37961824432867	6.41862651701648	6.90525157084443	6.41028754125418	6.58831509489965	0.0487801516961745	0.878244306265273	0.971842464414451
Merged-chr19-45998402-6	chr19	45997897	45998897	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_198296)	promoter-TSS (NM_198296)	91.0	NM_198296	71617.0	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	8.07591623191914	8.12869661834868	8.07705083408328	8.1692533364772	7.93444721191188	7.65738068418965	-0.214279186049491	0.363918920265836	0.749357676652347
Merged-chr17-25874307-2	chr17	25873807	25874807	+	810.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	X5B_LINE|LINE|CR1	-1193.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	5.97940423217825	5.9261316654514	5.93706817137074	6.01258794362509	5.94374146538333	5.85138144991721	-0.0123381383034056	0.96641015679008	0.992302763946523
Merged-chr2-180120272-4	chr2	180119758	180120758	+	916.5625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	892.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	6.20374875721975	6.47689936125957	6.34073782542001	5.88823820634989	5.85656910071259	5.68796866927132	-0.900477365227704	0.00245115003127937	0.0361622857806194
Merged-chr15-78903082-1	chr15	78902582	78903582	+	628.0	f1_balb.idr	exon (NM_001316684, exon 6 of 18)	exon (NM_001316684, exon 6 of 18)	3314.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	3.22453284357552	2.90076466518454	3.26437408343251	3.1300703105903	2.65081005801503	3.22660337300318	-0.484217342262593	0.53019931206891	0.851070276054813
Merged-chr11-101449156-3	chr11	101448646	101449646	+	758.166687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027320, intron 1 of 6)	RLTR12E|LTR|ERVK	734.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	6.39864929608266	6.54925954310739	6.36426867022092	6.4631378389291	6.73021231295395	6.63823444589799	0.278941596180308	0.301025721720357	0.697704518489441
Merged-chr15-103306174-2	chr15	103305674	103306674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR|SINE|MIR	4264.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	6.57650838480604	6.86260352920407	6.72347199902837	6.9980551839289	7.17716279725711	6.75017148517456	0.416629758099704	0.122636666733387	0.468519364809535
Merged-chr2-157566250-4	chr2	157565742	157566742	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355426, exon 1 of 2)	5' UTR (NM_001355426, exon 1 of 2)	119.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	9.24721656792628	9.36553882672596	9.00876978766222	9.11383879111702	9.38643939414318	8.77606334904141	-0.130317298801938	0.594503206532376	0.879092655349042
Merged-chr15-55113594-4	chr15	55113127	55114127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-45.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	6.39608943201069	6.34871699571914	6.25021617391811	6.38357115096134	6.57493055966257	6.13717261711574	0.089820141346088	0.754860912923857	0.939123558849015
Merged-chr16-35862271-2	chr16	35861771	35862771	+	606.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039530, intron 4 of 16)	B3|SINE|B2	9111.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	2.92459585309552	3.12914718866178	3.00545777510352	2.92777996913521	3.05786557790364	3.13590574315052	0.0782754050610529	0.907469523705633	0.978939051225517
Merged-chr10-118081682-4	chr10	118081168	118082168	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	-60119.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	8.03151109051991	7.63459528593542	7.39150354513714	7.8410533533579	8.13106886306617	7.57814772569662	0.223909511105521	0.42927118335661	0.795682190695026
Merged-chr19-29253030-4	chr19	29252550	29253550	+	987.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	1247.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	6.86521841801915	6.93609298337879	7.20078145776954	6.85353394500345	7.31252157135019	7.15207548127266	0.185933387363135	0.490688199692973	0.830146830531276
Merged-chr7-80390053-2	chr7	80389552	80390552	+	1000.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001081454, exon 16 of 16)	3' UTR (NM_001081454, exon 16 of 16)	-2106.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	3.90815853166366	4.07440167317419	4.54824810624955	4.02563381690165	3.64814597109253	4.46702648999485	-0.314331324657067	0.592218356545886	0.878003422897225
Merged-chr15-98917224-2	chr15	98916724	98917724	+	680.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029098, intron 1 of 16)	intron (NM_029098, intron 1 of 16)	874.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	4.667226838831	4.65736552753617	4.7577872295867	4.77769159269361	4.73520291559409	4.44695632681944	-0.0477438198318567	0.90830576476639	0.979259582109985
Merged-chr11-32571330-4	chr11	32570877	32571877	+	901.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	38111.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.49192279938788	4.65628190145826	4.63122416145915	4.64501193106754	4.46283977414818	4.30481551175144	-0.271747222670211	0.530614687195464	0.851258760886905
Merged-chr2-167935212-2	chr2	167934712	167935712	+	644.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011201, intron 1 of 8)	T-rich|Low_complexity|Low_complexity	2885.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.48681643340916	4.65583601388261	4.9741930013493	5.07018628777789	4.66391353982345	4.93581064480506	0.421431387697702	0.324669443267239	0.717563375758146
Merged-chr5-30148589-4	chr5	30148080	30149080	+	773.666626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178878, intron 1 of 19)	ID4_|SINE|ID	6400.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	4.44876759587104	4.44694522126442	4.90525921597654	4.68319697006526	4.82774314289324	4.79311210771156	0.392563451870631	0.359722763114029	0.746001337716324
Merged-chr15-85091449-4	chr15	85091017	85092017	+	876.4226070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080470, intron 16 of 24)	intron (NM_080470, intron 16 of 24)	40440.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	6.01895363350675	6.29209481563891	6.22935116041674	6.52595602354776	6.61861880128428	6.40814701622231	0.562256697931689	0.0440476625487954	0.264038463032935
Merged-chr14-122297052-1	chr14	122296552	122297552	+	841.0	f0_balb.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-63414.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	2.91221546736265	3.13097663469417	2.76291122167554	3.01153326733215	2.91959750888843	3.08679392527016	0.25053340552922	0.725764982278231	0.929707128236285
Merged-chr12-99284653-4	chr12	99284150	99285150	+	883.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-121842.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	3.18870893604246	3.31307706000456	3.43290506515213	3.53312532106039	3.02151599959406	3.6067034178385	0.367510038780278	0.581215376525305	0.873246537431079
Merged-chr15-81846962-1	chr15	81846462	81847462	+	785.0	f1_c57bl6.idr	Intergenic	Intergenic	11364.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	4.54494705320539	4.45470987643947	5.24480936265536	4.69153619412524	4.43989557201459	5.10713758364295	-0.0485855754495484	0.922341711541649	0.982542868764899
Merged-chr10-8859296-2	chr10	8858796	8859796	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	26774.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.74698868815399	7.59853899722825	7.09243663924118	7.46312751387955	7.58390726478765	7.19042278503288	-0.130159891590536	0.642034652173401	0.899291630974571
Merged-chr17-24455853-1	chr17	24455353	24456353	+	719.0	f1_c57bl6.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-461.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	5.18810584349781	5.14503200537133	5.45962866820403	5.68171254558972	5.78234547692197	5.76248649557844	0.927274945157417	0.00525598413322483	0.0633642317817114
Merged-chr2-90490473-4	chr2	90489968	90490968	+	953.416626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-11294.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	6.92006915427916	6.8351520024876	6.7339643351068	7.02753565695366	7.41150562502588	7.08294448594825	0.54411033114341	0.0362552212447881	0.234254111611766
Merged-chr1-20829529-4	chr1	20829042	20830042	+	991.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9230.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	4.30396005374288	4.81348515057492	4.76360110516415	4.68203321886855	4.7011141102892	4.82873004506753	0.211442134197814	0.628135957455464	0.893508518159715
Merged-chr11-67559774-4	chr11	67559255	67560255	+	997.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-26745.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	2.92415206457273	2.84796497277082	3.10818269351735	3.63835923410771	3.12080086261834	2.85704363229764	1.22605508600658	0.103165589082458	0.428296315983601
Merged-chr1-184137441-2	chr1	184136941	184137941	+	826.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	103060.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	2.63466518868313	2.81919326531657	2.74786026276894	2.78539318364668	2.78519595663169	2.99947149586509	0.609658636971343	0.402931707055759	0.778365878954155
Merged-chr6-34938587-4	chr6	34938079	34939079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009292, intron 8 of 8)	intron (NM_009292, intron 8 of 8)	17631.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	7.21525665850661	7.53159453955554	7.04115453830532	7.31552292731827	7.41775960573374	6.84593466603443	-0.0885160563807537	0.757570240068998	0.939883186830738
Merged-chr8-71570506-4	chr8	71570014	71571014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357182)	promoter-TSS (NM_001357182)	-80.0	NM_001357182	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	6.25927510986473	6.26457773705073	6.36631323890336	6.24737724441366	6.21959647349014	5.95442043519782	-0.229774077921889	0.420067151367888	0.789438387352498
Merged-chr17-8902176-4	chr17	8901695	8902695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347321, intron 2 of 21)	ORR1D2|LTR|ERVL-MaLR	52210.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	6.2182434064008	6.14965920520704	6.11703917327593	6.11788866127965	6.13986801919603	5.81517982148472	-0.204728754318624	0.486916554717956	0.828094524076599
Merged-chr9-114794099-4	chr9	114793536	114794536	+	878.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12043.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	5.60577224663592	5.67566708889962	5.68519080559549	6.55692450005526	6.78223898107283	5.83444044222942	1.38129199046759	9.13033766610613e-05	0.00262877901910505
Merged-chr12-85941115-1	chr12	85940615	85941615	+	1000.0	f0_balb.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	116165.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	2.99245321319581	3.19257507494858	3.6176959745334	2.65473128002305	2.88201632404598	2.88811263220011	-2.24056349459704	0.00513298730193597	0.0622875320722602
Merged-chr2-170184783-4	chr2	170184275	170185275	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-42100.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.12711102741337	6.09792492167084	6.44258820130963	6.55319719517268	6.23657489836185	6.43077013628513	0.310937171532992	0.288156489284924	0.685538094827406
Merged-chr15-50871416-4	chr15	50870910	50871910	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	17639.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.42022565592413	6.55407477111217	6.22129073125853	5.88892011939679	6.10733317715871	6.21952527355821	-0.565546926522633	0.0538202346101091	0.29752889094966
Merged-chr13-112004330-4	chr13	112003835	112004835	+	935.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	136399.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	2.95404197032555	3.1858137269107	3.43535811523937	2.9707997338857	2.62273341512992	3.01807156766468	-1.51826559785571	0.0481088020648369	0.278085251977141
Merged-chr11-93995261-4	chr11	93994766	93995766	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-825.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	9.22147138231343	9.36954713531346	8.80725861384017	8.82737742563852	9.44042492759019	8.57325082786113	-0.201739471404629	0.493159460759827	0.831208279358962
Merged-chr2-72366701-4	chr2	72366179	72367179	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80978.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	6.13591270850207	6.56550570496494	6.22940463757333	6.83567020119031	7.11074195570826	6.43549415548859	0.802923714414692	0.0110308702676737	0.107704371418986
Merged-chr19-59076334-4	chr19	59075834	59076834	+	762.166687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175172)	promoter-TSS (NM_175172)	-265.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	3.9447129559877	3.53913221202269	3.48356361855371	3.42833096221867	3.69215565351494	3.71978926696915	-0.199860459974216	0.737866208485019	0.933858424870961
Merged-chr4-147401592-2	chr4	147401092	147402092	+	995.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-151685.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	3.42989588201658	3.64810165101433	4.04088350965983	3.33667969662468	3.44205031553278	4.0236328836209	-0.309781043325659	0.635109568735327	0.896439353901449
Merged-chr4-59497990-1	chr4	59497490	59498490	+	559.0	f0_balb.idr	intron (NM_144904, intron 6 of 14)	ORR1D1-int|LTR|ERVL-MaLR	51374.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	3.09383148887762	2.92164508306522	3.24536913554874	2.78725391899754	3.02373662473034	3.20817908583642	-0.335524939583158	0.635301130284757	0.896469829713807
Merged-chr2-150750289-3	chr2	150749778	150750778	+	987.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1197.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	5.91388626865698	5.88814381232399	5.82944877588863	6.34427502647923	6.17713407837549	6.01488533150458	0.534644849864421	0.0699113196540253	0.346178355497033
Merged-chr5-125390148-4	chr5	125389656	125390656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-139.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	8.73099190235209	8.95964475421526	8.24120217427513	8.74368962792906	8.99312306249704	8.14647923175341	-0.00160558947967324	0.995776453764755	0.998961028701257
Merged-chr6-31385780-4	chr6	31385279	31386279	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	12994.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	6.96052695538738	7.10042929667492	6.81793710044906	7.10788587090398	7.06657330086229	7.26957177830476	0.263097817362045	0.289588924196524	0.687296395388689
Merged-chr8-120620449-4	chr8	120619944	120620944	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	13938.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	8.34285687359982	8.68402197194223	8.21119686441952	7.89698027587969	8.36979601331122	7.89839305840829	-0.490188208892233	0.0612908560830897	0.321030438937538
Merged-chr10-18965082-4	chr10	18964587	18965587	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	46876.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.80538230373174	2.9310333060648	3.05421896843046	3.24117194851236	3.00191266698321	3.0678806171897	0.817731205835976	0.23218987803421	0.62845798488942
Merged-chr1-138085168-2	chr1	138084668	138085668	+	753.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001268286, intron 16 of 28)	Lx5|LINE|L1	89958.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	2.36109196140842	2.45496434258256	2.60413693357177	2.42165861645377	2.19140873943767	2.42830538599147	-0.809472369538291	0.34117383726395	1
Merged-chr2-168978238-4	chr2	168977743	168978743	+	983.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040326)	promoter-TSS (NR_040326)	-26.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	4.67794185139858	4.2280422507968	4.07427783897595	4.30804231483594	4.34295311340653	4.14561125430282	-0.235866183770215	0.63580291153944	0.896797678725484
Merged-chr7-29170227-8	chr7	29169805	29170805	+	944.0104369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	95.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	4.82384610975648	4.4352583567295	4.77274170502691	6.44768387929637	6.56120883316132	6.35041817248497	3.4715846251962	5.04079159848378e-21	3.8130380666058e-18
Merged-chr17-78415631-2	chr17	78415131	78416131	+	749.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360407, intron 1 of 9)	intron (NM_001360407, intron 1 of 9)	2521.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	5.51526246267953	5.55161256524073	5.54359862332676	5.80696126437363	5.78339036876314	5.45659919261939	0.308664982545997	0.343715467579726	0.732572352000629
Merged-chr7-101302782-3	chr7	101302292	101303292	+	830.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	-704.0	NR_152152	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	5.96277269160142	5.75362065396638	5.62964167115915	5.66713496040209	5.91818486463994	5.41754022884018	-0.173748798622031	0.610981149839719	0.885849400663435
Merged-chr3-152149508-4	chr3	152149026	152150026	+	907.533325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	16374.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	3.50446248440182	3.45788023443111	3.45766304428681	3.14890720253774	3.14759538407595	3.18769523571862	-1.29308126823467	0.0371537151937469	0.237861532187527
Merged-chr4-9647464-4	chr4	9646975	9647975	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3758.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.4177881598581	5.01467865996525	5.25392180252762	5.99780012218697	6.09708081919514	5.48410108423221	1.23323871055174	0.000786789361834708	0.0149913371237789
Merged-chr2-90577154-2	chr2	90576654	90577654	+	901.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	3493.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	7.8457930768892	7.7314306516574	7.88601672657617	7.89454168496532	8.11807854018074	8.10224487746798	0.318037882831847	0.145349265667625	0.508390278977779
Merged-chr3-89102044-4	chr3	89101541	89102541	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_134469)	promoter-TSS (NM_134469)	-74.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	5.35819315973765	5.64866572183218	5.14338060997774	5.2157656922446	5.35409087532476	4.90118872151817	-0.449949283861838	0.247099897756248	0.644145276280485
Merged-chr8-120722661-2	chr8	120722161	120723161	+	723.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	-13697.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	2.033531944584	2.18399999773006	2.41459858403825	2.5372865158472	2.2479998111498	2.5526791492706	1.57625050832494	0.0958201805847349	1
Merged-chr10-62793007-2	chr10	62792507	62793507	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	-639.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	7.50897256688798	7.81929719669164	7.41402203349671	7.67953558436063	7.87252294049181	7.33422481791121	0.0848448224522371	0.749703502856731	0.93745630986217
Merged-chr11-74492758-2	chr11	74492258	74493258	+	812.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	97400.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	6.75717228592677	6.63817838756241	6.92193757960848	7.04091163697892	7.2428057695771	6.81935735282976	0.43901063443046	0.098755952485984	0.419185088734059
Merged-chr2-90532513-2	chr2	90532013	90533013	+	737.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	48134.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	4.92975230986335	4.90205135908511	4.98789320011797	5.65808172627838	5.5441894566177	5.53551655036641	1.29952154526673	0.000174634271767546	0.00448559670963326
Merged-chr16-23609065-2	chr16	23608565	23609565	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-854.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	6.5288354613008	6.39311693578612	6.36866537672079	6.51608748403773	6.81348774269777	6.30758053725108	0.228843837587931	0.427273589298094	0.794204865817398
Merged-chr11-65788346-4	chr11	65787858	65788858	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009157)	promoter-TSS (NM_009157)	1.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	7.47226650192261	7.37135676320636	7.21778140537038	7.34952240580695	6.68913674034775	7.28692349681315	-0.336403368460407	0.240287416760512	0.637355287657274
Merged-chr2-45244961-4	chr2	45244542	45245542	+	741.0625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-127600.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.48329323630797	7.65072837811833	7.52778547828782	7.4830601047898	7.44430713425572	7.69545778747753	-0.0259672897778871	0.910121178720637	0.979782681765082
Merged-chr19-55655021-4	chr19	55654529	55655529	+	973.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	47175.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	7.19226155549516	7.08801772504328	6.63071576121163	6.69253256800475	6.8414242464522	6.48700097633304	-0.482463186595343	0.0944648152266062	0.409728333266026
Merged-chr2-180255490-2	chr2	180254990	180255990	+	864.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1889.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	3.15677253553072	3.25334891506918	3.25789325856996	3.00672408705164	3.01381173731308	3.10066621756782	-0.815772322209085	0.20804800803523	0.598943315662577
Merged-chr14-31573129-4	chr14	31572636	31573636	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	4247.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	3.57805735788219	3.21012567273604	3.50908663917897	3.45705956101873	3.20660206970622	3.72978343240049	0.126124746392348	0.843356586895593	0.963409871508
Merged-chr5-100557764-2	chr5	100557264	100558264	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14441.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	4.11623679666314	4.21799850688438	4.48521800588954	6.23120019317238	6.38815002750475	6.2132813468876	4.53220565445413	1.61732827932797e-24	2.53914436728909e-21
Merged-chr2-13561941-2	chr2	13561441	13562441	+	683.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mus3|LINE|L1	-12370.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	3.19058134904517	3.13910247315028	3.35939026626707	3.19232508990179	3.29098910258029	3.37595518322453	0.243174154916654	0.695802631650968	0.919291538728398
Merged-chr9-50568134-2	chr9	50567634	50568634	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_008360, intron 3 of 7)	B4|SINE|B4	-6866.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	6.42825710133486	6.69511247110577	6.12638761207084	6.37392548666238	6.44315205284301	6.41668426178625	-0.0633293254705599	0.829860277047398	0.960134151531511
Merged-chr11-74637611-1	chr11	74637111	74638111	+	543.0	f1_balb.idr	intron (NM_001013784, intron 3 of 3)	intron (NM_001013784, intron 3 of 3)	-11884.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	4.36787702874945	4.61605127956237	4.62361494997993	4.34907496955541	4.40749264762547	4.40164758186341	-0.382945116334775	0.38011219365905	0.762308048682461
Merged-chr6-29270676-2	chr6	29270176	29271176	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1812.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	7.00663186130917	7.10264877928257	6.97798790120841	6.55010771726731	5.8655397796388	6.50150096579028	-1.10615168010397	0.000332644884356378	0.00758944763847697
Merged-chr12-52701351-3	chr12	52700851	52701851	+	986.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	1968.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	3.18354760948762	2.91360638520458	3.20149098200552	3.13382261810006	2.89335580037524	3.43197084974967	0.263158092003046	0.70732529600046	0.923333488588471
Merged-chr19-5622107-4	chr19	5621620	5622620	+	951.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-12026.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	5.2149734907709	5.4858771202629	5.5365946400418	5.538078346084	5.51759257087973	5.62585306054367	0.273962711475054	0.414930014424346	0.786115461363139
Merged-chr2-31114411-4	chr2	31113904	31114904	+	968.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355105, intron 1 of 15)	MT2B|LTR|ERVL	-17904.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	4.65406971155046	4.74023933818752	4.68793700137578	4.70851782397972	4.67477486238162	4.63304249197694	-0.0502528142561489	0.900175208945558	0.976728292075907
Merged-chr7-142095356-4	chr7	142094864	142095864	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-80.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	7.0758545604389	6.38849047855199	6.00603728704069	6.35240289284104	5.58415309520423	5.47940364968671	-1.15679996353124	0.0980711419923978	0.41742408696201
Merged-chr11-98741862-4	chr11	98741382	98742382	+	995.4166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001313983)	promoter-TSS (NM_001313983)	97.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	6.68928504929923	6.29287025301267	6.83955300825879	6.96469126328848	6.4517571801342	6.23497913727588	-0.045165792608979	0.891771566099743	0.974942585822634
Merged-chr4-40773327-4	chr4	40772829	40773829	+	985.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15444.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	3.36515222376937	3.03878071834356	3.47405197431408	3.41246519019777	3.34725615606304	3.38306120097184	0.314818565383796	0.619626118577846	0.889868376148509
Merged-chr2-73516606-2	chr2	73516106	73517106	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	12881.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.88726492453812	3.86880373397449	4.24699957495066	4.1944008516419	3.91220132130875	4.31357267855372	0.404495607286326	0.4330147829444	0.79758551656855
Merged-chr8-107100486-4	chr8	107099960	107100960	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx7|LINE|L1	-3915.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	4.91053477469392	5.01260694904524	5.128692129483	5.13073947547351	5.08008202838559	5.12653994424619	0.205890893623224	0.571866441175092	0.869731184538705
Merged-chr17-27975490-3	chr17	27974985	27975985	+	698.944458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	66179.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	4.35185305354897	4.20554932733009	4.21462997328386	3.4068572366503	3.4059474258231	3.80736561481785	-2.43694980420175	2.7153356693217e-05	0.000947327674519582
Merged-chr1-54663606-1	chr1	54663106	54664106	+	560.0	f1_balb.idr	intron (NM_001081433, intron 19 of 27)	(CAAAAA)n|Simple_repeat|Simple_repeat	-105922.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	3.11483796319859	3.00423069358483	3.32956483680365	3.41366958739032	3.52538684012794	3.34521586088451	1.1743850084409	0.0650184197054019	0.332517536530301
Merged-chr11-88954201-3	chr11	88953693	88954693	+	690.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029023, intron 1 of 12)	B2_Mm2|SINE|B2	1249.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	5.51403334040894	5.86134245762474	5.22717970069356	6.1620032483231	6.17868596566493	5.25699017615134	0.664571799356741	0.114851952275874	0.45246916552109
Merged-chr16-96126825-3	chr16	96126319	96127319	+	833.777771	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008251, intron 4 of 5)	B3A|SINE|B2	906.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	4.5478893134293	4.27230249329876	3.92061028559097	4.15563492852233	3.88204540078731	4.14659922362896	-0.609195357578224	0.241969966576554	0.639062070204697
Merged-chr2-84608227-1	chr2	84607727	84608727	+	950.0	f1_c57bl6.idr	intron (NM_001355064, intron 16 of 18)	intron (NM_001355064, intron 16 of 18)	41253.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	3.35197269957885	3.45130210430969	3.74448607326982	3.69560008179099	3.74152384190211	3.76423319703186	0.757766177380464	0.183825440669725	0.567244140856875
Merged-chr12-70227728-4	chr12	70227221	70228221	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	-38.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	5.86362562899381	5.73040651613631	6.12148208255598	6.18655812573464	6.06170339582464	6.09721308947677	0.368124391906471	0.223283419439868	0.618087468987021
Merged-chr11-110268661-4	chr11	110268159	110269159	+	967.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_147219)	TTS (NM_147219)	-16883.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	3.18681858980395	3.56598248004867	3.49032460530351	3.26274538852439	3.22884081303088	3.0361595401628	-0.965705008358778	0.143827685316612	0.506290928785533
Merged-chr19-5566768-2	chr19	5566268	5567268	+	822.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-1256.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	4.02923438235012	3.90665705022097	4.43793206927284	3.9987071126343	4.06287948639937	3.65589136186927	-0.617144822350936	0.267455035498188	0.664707245929906
Merged-chr16-33828626-2	chr16	33828091	33829091	+	793.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1074.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	2.5010434127546	2.55078321494984	2.61430270476875	2.34452050585286	2.52271598724504	2.43428914045525	-0.697449723949923	0.388722991574738	1
Merged-chr17-84189405-2	chr17	84188905	84189905	+	866.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_183021)	TTS (NM_183021)	-1458.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	5.54101945204132	5.52856271988817	5.94133869483265	5.32513553572245	5.595224783013	5.56390332874152	-0.319564294665883	0.355548387671328	0.742470266560152
Merged-chr10-87860284-4	chr10	87859798	87860798	+	867.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	-813.0	NM_001111274	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	7.1048545838342	7.55419513324206	7.19670368996589	7.51774519026708	7.92066026755007	7.38419300406623	0.485644871633609	0.0805258260599485	0.375537210254532
Merged-chr5-65873260-3	chr5	65872797	65873797	+	931.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	9728.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.34386077466449	5.12561925013243	5.24210974585969	5.33727684815897	5.28399106871387	5.27379890055841	0.118834563601173	0.732010463054275	0.931655063903171
Merged-chr7-74724839-3	chr7	74724341	74725341	+	979.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-170061.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.11242478693957	2.08114369736111	2.56605195763193	2.04931219771084	1.9384386892864	2.21004745132029	-1.46115301332379	0.135986388939306	1
Merged-chr10-79838321-3	chr10	79837862	79838862	+	736.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-16070.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	3.75486238778995	3.55278232224302	3.83382667443505	3.45078841412619	3.62004721959167	4.24618755536412	0.305692573086669	0.618904529477402	0.889524760662882
Merged-chr17-56630414-3	chr17	56629917	56630917	+	716.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175350, intron 1 of 21)	IAPLTR2a|LTR|ERVK	2274.0	NM_175350	106757.0	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	cation channel sperm associated auxiliary subunit delta	protein-coding	4.77256894768168	4.64006516105704	4.58882192479547	4.02816256051178	4.03239335860236	4.01191358025167	-1.74516331749513	0.000168106070160037	0.00435078379031925
Merged-chr7-79465753-2	chr7	79465253	79466253	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001360095, intron 1 of 22)	CpG	520.0	NM_001360095	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	6.71199755365779	6.68272255176492	6.92809714576225	6.5798243011889	5.99093288434744	6.53751172795527	-0.619097179872622	0.0421019532749307	0.25694728825733
Merged-chr1-131700584-4	chr1	131700084	131701084	+	997.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	11889.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	4.02908313945137	3.77588269207677	3.81540742756202	4.29532498186973	4.0752292160343	4.55773641845119	1.24045973872675	0.0166761550722912	0.143183315576845
Merged-chr4-147346834-2	chr4	147346334	147347334	+	685.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039209, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	170968.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	2.53834165533644	2.59936508769886	2.78749910821311	2.50433959474573	2.65411494129649	2.68024314680789	-0.146483701013089	0.84889459145013	1
Merged-chr7-45338825-2	chr7	45338325	45339325	+	993.3333130000001	f1_balb.idr|f1_c57bl6.idr	TTS (NM_029741)	TTS (NM_029741)	3556.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	4.67521830412153	4.41522220845215	4.01030719594859	4.61763262669566	4.12718350024288	4.33683433384577	-0.0714694361995811	0.889768950437206	0.974313026039223
Merged-chr6-91156717-4	chr6	91156190	91157190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_144919)	promoter-TSS (NM_144919)	-125.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	4.06835404472657	4.06710905575998	3.90060254378981	4.06727419108319	3.87648106138002	3.86647390666725	-0.239116875658986	0.634255308453112	0.896306748317281
Merged-chr3-86224750-4	chr3	86224212	86225212	+	816.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	22.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	4.17688652841019	4.01658430962321	3.95135360382503	3.43268465111223	3.47916344872574	3.60316762465014	-1.89312686444968	0.000730175396424565	0.014116275865136
Merged-chr4-129514512-4	chr4	129514065	129515065	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010807, intron 1 of 1)	intron (NM_010807, intron 1 of 1)	984.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	6.19458593185164	5.64027565969516	6.16558995130054	5.6663194708432	5.58819383205963	6.31836868661569	-0.227441194560874	0.547956349089647	0.859456555901125
Merged-chr12-12300948-2	chr12	12300448	12301448	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38809.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.7741435980214	6.41268405005423	6.83527326494652	6.86795339772965	6.90012285603335	6.92177762943869	0.336675161505361	0.208256677409242	0.599129468377008
Merged-chr13-60620768-4	chr13	60620270	60621270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	18559.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	7.71182645795844	7.73186611524809	7.60415949815179	7.33654532552768	7.53936369294095	7.21800263855563	-0.446202025316279	0.0569052661586131	0.307554675242418
Merged-chr12-35076141-4	chr12	35075640	35076640	+	865.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	28951.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	5.1706895339862	4.97121468483448	4.93400238812043	6.35405301720675	6.55610213112717	5.91191231517895	2.35180726185773	5.90254515338863e-11	8.20609250162992e-09
Merged-chr6-31809983-4	chr6	31809479	31810479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-143848.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	5.05455424696402	4.81465966872652	5.56459091625278	5.7742364904844	4.44943784973185	4.87418426403801	-0.0510435129350648	0.952795510784469	0.989289541051949
Merged-chr5-73256799-4	chr5	73256273	73257273	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-155.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	5.84253835618263	6.12744471430567	6.45904044642222	6.1962081852698	6.23242200448367	6.07282714579368	0.0285217468480017	0.928002339720464	0.983759092435667
Merged-chr3-95929191-4	chr3	95928695	95929695	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001253758)	promoter-TSS (NM_001253758)	-62.0	NM_001253758	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	6.59224217927025	6.30245238027087	5.91993669960151	6.38001113920023	6.33853736001051	6.15205655363084	-0.0258048306863018	0.934999420610261	0.985758101267319
Merged-chr3-81127267-3	chr3	81126772	81127772	+	654.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90856.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	5.81813885836899	5.77555533459787	5.83291239520841	5.76207687359981	5.66992689385782	6.07411004837063	0.0469713356898498	0.881763820576374	0.97289513266204
Merged-chr19-3655031-2	chr19	3654531	3655531	+	659.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_008513, intron 2 of 22)	intron (NM_008513, intron 2 of 22)	31533.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	2.58663338589583	2.51005952761833	2.73372692255194	2.44134777512661	2.26399705716614	2.80654323091776	-0.514303634566141	0.549919172713583	1
Merged-chr7-126502518-4	chr7	126502016	126503016	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001347658)	promoter-TSS (NM_001347658)	-91.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	7.90780646392867	8.42487470710361	8.18480786167294	8.13889879241236	8.3218904148089	8.40932552900469	0.142597090037654	0.556427406752195	0.863603167403937
Merged-chr4-109476716-4	chr4	109476253	109477253	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013876)	promoter-TSS (NM_013876)	-248.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	7.36360057253039	7.24804424379219	6.97208739746704	7.44636365273641	6.90590989032124	6.97308324123032	-0.116205816156552	0.680773902668453	0.914453707211828
Merged-chr12-91746611-4	chr12	91746109	91747109	+	892.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175367, intron 1 of 6)	MTC|LTR|ERVL-MaLR	39827.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	4.3387602428914	3.87435918236022	4.41294771756293	4.20129492468806	3.71698665611438	3.93946244531453	-0.742259053165716	0.174258821328349	0.553403610743454
Merged-chr13-103774385-5	chr13	103773804	103774804	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_001361085, exon 1 of 12)	exon (NM_001361085, exon 1 of 12)	304.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	8.15318859497839	8.21463225881491	8.00997305434346	8.21244569696014	8.3127687930759	8.03602048658261	0.0914012125952987	0.674677869175857	0.911852710156386
Merged-chr19-12461086-4	chr19	12460600	12461600	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010821, exon 2 of 2)	5' UTR (NM_010821, exon 2 of 2)	321.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	8.04945254048563	7.81710279189493	7.96030698326018	8.2285610951264	8.37285140160111	7.98577367227424	0.377006977992653	0.100103879863176	0.421955278715811
Merged-chr2-43862887-4	chr2	43862368	43863368	+	945.43335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	114044.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.42452079070275	3.18357037119148	3.47389483676457	3.16548589215649	3.32532071846583	3.09296223586426	-0.646326540328996	0.318847854603835	0.712864881260604
Merged-chr1-144296477-2	chr1	144295954	144296954	+	552.5	f0_c57.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47350.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.47225680210497	3.3109321479766	3.14275795772775	3.24782648479627	3.14373757366797	3.33355593270405	-0.333416186195334	0.599259078368652	0.880928581989958
Merged-chr2-102990449-4	chr2	102989958	102990958	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	83055.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	6.17291522784479	6.19660189612761	6.16213780958397	6.04766117433118	6.3226493315143	6.26340031339104	0.0691889998056176	0.807308270462692	0.954549423339345
Merged-chr7-100608491-3	chr7	100608023	100609023	+	783.916687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_153424)	promoter-TSS (NR_153424)	-222.0	NR_003559	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	6.55762538608048	6.5672073402195	6.56558246139771	6.34238640853235	6.36831810296765	6.53969695119825	-0.24263839814428	0.356594263397237	0.743348418397567
Merged-chr4-130916231-2	chr4	130915731	130916731	+	751.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2897.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.91361047496916	7.08239855759932	6.96361374280087	6.97886718046738	7.26255223240368	7.1141483683413	0.209219128614349	0.398146868314946	0.774911223305343
Merged-chr11-120237402-4	chr11	120236897	120237897	+	926.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	4450.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	4.44047609843692	4.33228596831954	4.50432601473191	5.38600300249201	5.0648081421493	5.1458125523955	1.78957037352775	1.06139133793825e-05	0.000422161809020868
Merged-chr9-15710285-4	chr9	15709794	15710794	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	556.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	8.19475531072957	8.34234704595845	8.1336605242576	8.09820964070811	8.11389428814762	8.0107341822237	-0.214891922618949	0.307004150546572	0.703099001056797
Merged-chr3-131868411-4	chr3	131867905	131868905	+	914.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-216887.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.83692749088356	4.0181547597867	4.66787835318779	3.8173318614758	3.83293582271327	4.37447378565715	-0.525181972976793	0.372206538579233	0.756099728816208
Merged-chr5-142904852-3	chr5	142904375	142905375	+	827.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007393, intron 3 of 5)	intron (NM_007393, intron 3 of 5)	1879.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.9755588887597	4.52171750283212	4.74108383333258	4.99978018572189	5.01007786137439	5.16212782167513	0.645739968057816	0.110206486685852	0.44355436116098
Merged-chr11-58978720-4	chr11	58978206	58979206	+	997.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	613.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	6.65030481969362	6.74903984377833	6.81218128661261	7.19883491873898	7.52871412789836	7.05598662878169	0.839824059728146	0.00141047225925797	0.0236142003517782
Merged-chr9-48984523-3	chr9	48983971	48984971	+	936.977783	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-914.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	7.05758648998461	7.43909987268104	7.02241199742048	6.96636460276031	7.17818903230177	6.73327697179989	-0.318812716614157	0.251225153898221	0.648731936769727
Merged-chr10-94728356-3	chr10	94727863	94728863	+	643.722229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029852, intron 4 of 15)	B1_Mm|SINE|Alu	39573.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	4.23883419383512	4.69449153624136	4.96333605448763	4.31421557136865	4.69299916372711	4.51720874925602	-0.328129280349688	0.496836407976236	0.833336003728501
Merged-chr10-81543437-2	chr10	81542937	81543937	+	746.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	1609.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	3.65661996994079	3.61406525305185	4.09170647858629	3.4509633756559	3.43513892406355	3.80377488328757	-0.78155007190049	0.189159243070743	0.574793203718745
Merged-chr6-8259233-4	chr6	8258748	8259748	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026632)	promoter-TSS (NM_026632)	-40.0	NM_001302354	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	6.35303418552441	6.53269248949629	6.17879286286336	6.39570078647046	6.35751661254999	6.45784164460285	0.0456445078920726	0.869879374228002	0.969928616023633
Merged-chr19-29252351-5	chr19	29251785	29252785	+	874.06665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001048177, intron 1 of 23)	intron (NM_001048177, intron 1 of 23)	482.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	7.33801668540567	7.09441036188801	7.75185251993904	7.58132986270473	7.5045922654206	7.62948836819557	0.227509366364999	0.395361196604724	0.772706685937094
Merged-chr11-31896217-2	chr11	31895717	31896717	+	777.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	25277.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.21350021903379	4.36942037427144	4.15887463115776	4.5397682245076	4.27269488359906	3.66316088867606	-0.149421993734005	0.895263375854109	0.975665889379756
Merged-chr10-58498746-4	chr10	58498242	58499242	+	824.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162956, intron 1 of 15)	intron (NM_001162956, intron 1 of 15)	805.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	4.81566625402947	5.34024271894428	4.83245858799688	5.0226205016036	5.08465807442873	4.81884129571942	-0.0940593573045354	0.820244589331208	0.95755810916818
Merged-chr5-86066739-4	chr5	86066235	86067235	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1152.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	6.0332428195521	6.37283883295779	6.05430842152584	6.29746232614974	6.67873851696109	6.06859533330484	0.362308555051233	0.260797354416897	0.65830988954893
Merged-chr10-75220905-2	chr10	75220405	75221405	+	650.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	8515.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	4.95546720873424	4.88692580203088	5.07496318629818	5.00667382496338	5.05672050202961	5.5438512126368	0.510349480120683	0.193581000773156	0.580793707892799
Merged-chr15-8445495-4	chr15	8445014	8446014	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG-4777	-1051.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	6.93795821763523	7.21478185915541	7.13412931866847	7.12606032823114	7.41433104760456	7.36431798934378	0.312218754277452	0.21007604938276	0.602053038404652
Merged-chr4-132624412-4	chr4	132623894	132624894	+	731.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER19B|LTR|ERVK	-14652.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	4.37467258670101	4.29115350332646	4.45500499204592	4.63278938587251	4.83232013513642	4.47920583363009	0.73661959465186	0.0892018794970444	0.396745242099106
Merged-chr13-49198958-4	chr13	49198479	49199479	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	11432.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	8.31668105967136	8.29199819012159	7.89054038234655	8.22477283861761	8.38282624795611	7.93007842838802	0.0172207400794376	0.944961888275534	0.987875414328125
Merged-chr16-24891694-4	chr16	24891251	24892251	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-167888.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	5.29353978926466	5.55328141856482	5.35560255050232	5.40367661839409	5.37733602664791	5.18945142707749	-0.149010567614983	0.667447525125629	0.908729013673458
Merged-chr9-56417122-2	chr9	56416622	56417622	+	887.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_172924, intron 1 of 6)	intron (NM_172924, intron 1 of 6)	928.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	4.93319143485482	4.7505748327241	5.00756573694153	5.00515681715554	4.73799187033703	5.03788040792807	0.0646332564526597	0.869536132522049	0.969818810183029
Merged-chr17-43017664-4	chr17	43017181	43018181	+	924.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	1126.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.10424694712858	6.0729793355756	6.33169870882851	5.54911273575992	5.80935925956482	5.99105241772353	-0.659495480786841	0.0358577425747839	0.232660098905784
Merged-chr13-49326463-4	chr13	49325966	49326966	+	975.033325	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15083.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	3.7822450593198	3.61978823987447	3.66000768806414	3.38136946502612	3.17094267588535	3.46269612135992	-1.34617217701842	0.0250723477541716	0.187323328717708
Merged-chr4-106909192-2	chr4	106908741	106909741	+	747.75	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2229.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.48048091066587	3.6907896150335	3.6635930745169	3.51446347636745	3.27052154603212	3.87697801232459	-0.155580368706408	0.799478692152232	0.952248176414355
Merged-chr4-139282257-2	chr4	139281757	139282757	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001037761, intron 6 of 9)	intron (NM_001037761, intron 6 of 9)	28451.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	2.53549304952617	2.42274497198724	2.98118408602453	2.61443389519234	2.23700226616109	2.71144788573704	-0.703339700269978	0.435304153454535	0.798959195186662
Merged-chr5-41526483-1	chr5	41525983	41526983	+	635.0	f1_c57bl6.idr	Intergenic	Intergenic	181208.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.27614225247041	3.40792046858988	3.44008764134284	4.18511681271231	4.11985066566303	4.09703418376455	2.68539371771394	4.73563160659804e-06	0.000211396155966636
Merged-chr7-81578088-4	chr7	81577577	81578577	+	939.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004185, intron 2 of 9)	intron (NM_001004185, intron 2 of 9)	6785.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	3.10420511624622	3.08484172992511	3.00365383214329	3.33143021702258	3.25693390235517	3.31514417249878	0.989718669436286	0.121583954463118	0.466432490504814
Merged-chr7-126752030-4	chr7	126751537	126752537	+	858.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M4|LINE|L1	-7589.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	3.61387281418939	3.49364651227444	4.02642892347707	3.50841010494244	3.52034673820916	4.0074613232965	-0.104010122424519	0.864227858337248	0.968269312109804
Merged-chr7-126175004-2	chr7	126174504	126175504	+	790.200012	f1_balb.idr|f1_c57bl6.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	25497.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	4.27200988146823	4.2779310682613	4.72723257763479	4.31129933906656	4.6883777081841	4.4412892774752	0.164826055416794	0.726285612740999	0.929763581417168
Merged-chr7-118279163-3	chr7	118278673	118279673	+	748.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35266.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	5.60419009343785	5.96586396871247	6.07253078890419	6.08288221181735	6.12008602897401	6.4021785533193	0.539799598538608	0.0896380896587865	0.397813545486602
Merged-chr6-124805771-4	chr6	124805260	124806260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-2901.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	8.03699895897271	8.07472998172802	7.8459534955529	7.56789466273761	7.64540701754414	7.4968077751873	-0.601669085821451	0.00660849951981192	0.0749543857454875
Merged-chr7-97034387-3	chr7	97033887	97034887	+	940.888916	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153591, intron 9 of 13)	L2a|LINE|L2	-47364.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.51788696521781	3.91460012595187	3.48247512816821	3.59102380824176	3.57302896326484	3.71837189256222	-0.125080074729195	0.83013394740539	0.960219727001139
Merged-chr9-25507841-2	chr9	25507341	25508341	+	677.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_026189, intron 2 of 7)	L1ME3E|LINE|L1	26244.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.56603574120583	3.35146142239061	3.36084067817829	3.54830861289541	3.57968715158285	3.43295904316891	0.343059780006385	0.559186281603286	0.864901733108576
Merged-chr8-14873960-4	chr8	14873457	14874457	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14579.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.67091605349354	4.49384349045456	4.30127640138536	4.18714856321543	4.45485212183756	4.36997196740092	-0.405903712225341	0.373930392749951	0.757658406466125
Merged-chr17-34934415-2	chr17	34933915	34934915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_010893, exon 5 of 6)	exon (NM_010893, exon 5 of 6)	3162.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	6.15314717408276	6.25155313735274	6.5516335560097	5.96558858214394	6.14408707616591	6.49626832629365	-0.182243651477046	0.560785439942768	0.865293826479951
Merged-chr19-38042516-2	chr19	38042013	38043013	+	660.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	1064.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	5.23626133637386	5.16709865876473	5.24392111282219	5.16518079631527	5.25837098685181	5.21077852233084	-5.34422638682814e-05	0.999877380363365	0.999986127056153
Merged-chr8-26702004-2	chr8	26701504	26702504	+	724.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	122419.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	4.15067947657948	4.31342159778361	4.40978295877319	4.52545949991859	3.7936321616588	4.30604210277563	-0.135679860920346	0.796773657331208	0.951517631310856
Merged-chr5-21701679-6	chr5	21701182	21702182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001359963)	promoter-TSS (NM_001359963)	-60.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	7.38073488247427	7.43655756182719	7.32147460428567	7.35596418811443	7.25320995607699	6.87881800778457	-0.288656226898081	0.254203949811057	0.651179145391095
Merged-chr3-148989463-14	chr3	148988842	148989842	+	905.031616	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-34707.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.12309694458252	3.88612086346234	4.02050975524802	3.41313616343375	3.27781625442964	3.40618869984236	-2.39119779070159	6.70412160419239e-05	0.00201822196252402
Merged-chr9-35039319-6	chr9	35038702	35039702	+	998.1904910000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-77526.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.29697592638738	6.5538564636078	6.34378387903892	6.7273892481577	6.98596914301335	6.51914770434821	0.577403053772152	0.0425862074860943	0.258787886485878
Merged-chr11-31736876-1	chr11	31736376	31737376	+	637.5	f0_balb.idr	Intergenic	Intergenic	-65014.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	6.24835333201884	6.10943360532045	5.92506806326036	6.26989454966907	6.00149777643285	5.85981014099897	-0.0835428554918876	0.786618804255582	0.948530822116986
Merged-chr8-40497876-1	chr8	40497376	40498376	+	728.0	f0_balb.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	12603.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	3.35250211139516	3.59020054568918	3.93235518938955	2.99563607621934	3.22310244503521	3.31358666057595	-1.78966131446293	0.00866500991983247	0.0911847913759227
Merged-chr10-21605160-4	chr10	21604664	21605664	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	12019.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	6.84183928401638	6.45405003628115	6.50854284309983	6.9185895984345	6.91595548118951	6.78642301091564	0.406155137240953	0.132596395558576	0.487305369976501
Merged-chr2-131091546-2	chr2	131091046	131092046	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4781.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	6.63306033465537	6.44208952844564	6.75087402837904	6.16658328821975	6.58666911396982	6.82358945760366	-0.0970921036508468	0.74933397136151	0.937281259219783
Merged-chr10-127062671-4	chr10	127062170	127063170	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-865.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	5.65330289939871	5.5207109530587	4.99802705695105	5.32655709252368	4.88048326823418	4.86247811147146	-0.779074992213044	0.0595337257827725	0.315843040992919
Merged-chr4-125015937-4	chr4	125015449	125016449	+	908.5499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14065.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	4.11695896322032	4.28173409132065	4.39538925212345	4.31424134328664	4.68785017316884	4.33068235800239	0.529201227146666	0.2564087794033	0.653552886970565
Merged-chr10-80158527-4	chr10	80158024	80159024	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_021565)	TTS (NM_021565)	8842.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	6.74899002606127	6.47130022341175	6.92472658882315	6.64153924461671	6.76998085116954	7.04694312273438	0.162285790202909	0.566480043587556	0.867389339126889
Merged-chr7-44928181-2	chr7	44927681	44928681	+	554.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001077264, intron 1 of 22)	intron (NM_001077264, intron 1 of 22)	1309.0	NM_007458	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	3.16232884941202	3.05115182814805	3.14862830737843	3.08438351129706	2.82519640733321	3.1052590259214	-0.525956303530937	0.43753841301672	0.800006510290393
Merged-chr9-94512461-4	chr9	94511977	94512977	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	25604.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	5.49271267802575	5.58633715791924	5.16388485324481	5.2663512394133	5.3213941932586	5.39295851212756	-0.223452672769327	0.525101965040831	0.848874487604023
Merged-chr1-138192197-4	chr1	138191713	138192713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16908.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	5.5515657589098	5.34245801561204	5.43588831547684	5.11800306891087	5.32109731178648	5.31756762553701	-0.374761439480832	0.277971188526286	0.675292010595171
Merged-chr16-91014484-2	chr16	91013984	91014984	+	676.5	f1_balb.idr|f1_c57bl6.idr	non-coding (NR_152264, exon 18 of 18)	non-coding (NR_152264, exon 18 of 18)	-3176.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	3.34725108359407	3.44241915637863	3.40934328748354	3.24934323337626	3.363898624668	3.53290431931793	-0.0685602468843897	0.908799136127176	0.979318923423343
Merged-chr14-30196487-4	chr14	30195971	30196971	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	157015.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	2.90631339617823	2.91000652855981	2.91057160498071	2.73397399306264	2.87073626016246	2.7347797262976	-0.618088244542586	0.388257472068465	0.76820261821444
Merged-chr2-59346688-4	chr2	59346171	59347171	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	40011.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	6.05319080691868	6.04205151165689	5.91300520911692	5.95477285384441	5.82878878458969	5.85078229895009	-0.229918408440347	0.43516321575421	0.798858510710769
Merged-chr19-32277009-4	chr19	32276488	32277488	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65975.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.976814550453	4.88157418394085	4.36829549528969	4.60043996254734	4.41369849034115	4.2894242852838	-0.803597917376678	0.0824212859416892	0.379666088554908
Merged-chr1-54914650-4	chr1	54914151	54915151	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	11736.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	7.32160625071367	7.26906451730595	6.97803237185683	7.1590817129216	7.38725619413136	7.11780884774638	0.0409512595835744	0.871313233404732	0.970222087171093
Merged-chr2-102900506-4	chr2	102900059	102901059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1106.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.75690853572814	7.87201003551728	7.40160319755338	7.71288225591067	7.85674820452701	7.78080803131417	0.121965065013985	0.613493125656304	0.887273066396938
Merged-chr19-41796965-3	chr19	41796468	41797468	+	736.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027667, intron 1 of 11)	intron (NM_027667, intron 1 of 11)	5116.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	3.34179029266341	3.20412369420977	3.14511056538045	3.04968628271776	2.87486691356433	3.1590335373295	-0.937381390190953	0.162169140878202	0.535591771804088
Merged-chr5-109556415-2	chr5	109555915	109556915	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001310694, intron 4 of 7)	CpG-11313	2578.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.71568548392846	5.52406218746601	5.98706237031456	6.01008737730715	6.19853326135095	5.97999108557129	0.581977123037049	0.0670113888141795	0.338404056591021
Merged-chr11-95293253-4	chr11	95292749	95293749	+	938.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	16997.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	6.78691597436288	6.84385727368135	6.57925866187451	6.35834153175164	6.41831222274739	6.40163179162153	-0.568357063806035	0.030977198286004	0.213038326719714
Merged-chr11-116635603-3	chr11	116635107	116636107	+	975.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8588.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	3.56850998218694	3.16121471793581	3.09594204034514	2.74462720675929	2.72484962947808	3.1100085123853	-2.06783844506095	0.00780560672605051	0.084601917996771
Merged-chr2-128752825-2	chr2	128752325	128753325	+	743.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008587, intron 6 of 18)	intron (NM_008587, intron 6 of 18)	53910.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	4.87328603232128	4.96151917144726	5.46705871993241	5.41808807830004	5.75152755012899	5.63616772102972	0.986165934829336	0.00960594376856969	0.0978178350151957
Merged-chr16-31066898-4	chr16	31066395	31067395	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	14537.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.88652811282615	5.90237604779095	5.84637710866895	6.546763194962	6.83918359784553	6.43757784251966	1.24600894441864	1.68963665335885e-05	0.000630737041959098
Merged-chr1-132010350-2	chr1	132009850	132010850	+	762.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007923, intron 1 of 4)	B2_Mm1a|SINE|B2	2745.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	5.85718061076099	5.71419596540381	5.56103168075811	5.5842033039718	5.7765689914065	5.70712900297024	-0.0547210341246782	0.864016048357671	0.968269312109804
Merged-chr12-80877116-2	chr12	80876616	80877616	+	751.166626	f1_balb.idr|f1_c57bl6.idr	exon (NM_178682, exon 6 of 6)	exon (NM_178682, exon 6 of 6)	47331.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	3.20559339879035	3.08519649685968	3.53162926547882	3.37433262271731	2.9284636329924	3.87854571398281	0.613237659588469	0.405388641823608	0.780134157220244
Merged-chr11-116419346-3	chr11	116418806	116419806	+	702.208313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6274.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.85727360651152	3.59868856556306	3.68886394437268	3.50768445091369	3.6082710131376	3.85800081332874	-0.206324771276176	0.713215027028945	0.92541785131338
Merged-chr1-64088896-3	chr1	64088387	64089387	+	794.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	32502.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.41132295239981	3.19005325507397	3.43704646321094	3.33885810717505	3.07352997269413	3.28804067995571	-0.461342416964803	0.466515920097231	0.817586753758551
Merged-chr5-117891289-4	chr5	117890775	117891775	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008712, intron 2 of 27)	MER47A|DNA|TcMar-Tigger	24436.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	7.28551530238057	6.99968978925414	7.50587623997786	7.17302209728018	7.05633549655987	7.19313682399639	-0.200064748635176	0.44028450984904	0.80173308886134
Merged-chr16-90738347-4	chr16	90737888	90738888	+	878.4500119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_029844)	promoter-TSS (NM_029844)	64.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	4.23922121742807	4.19042875810487	3.92579942414367	4.00986340424908	4.182602713613	3.94390920751497	-0.21772785864831	0.663249558422596	0.907110065208622
Merged-chr5-127624644-1	chr5	127624144	127625144	+	726.666687	f0_balb.idr	Intergenic	B3A|SINE|B2	-7252.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	2.53504114251435	2.63558863099878	2.61683750005456	2.62663272070584	2.19359394627581	2.36199988921349	-1.16250199587883	0.194876273442596	1
Merged-chr1-153549630-4	chr1	153549087	153550087	+	977.5476070000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028749, intron 1 of 11)	CpG	127.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	4.95355218420474	4.88606277724507	4.56753734057546	4.59174187474402	4.46378544781373	4.2574710375656	-0.884898724415823	0.0441513798271802	0.264412553091983
Merged-chr11-83060676-2	chr11	83060176	83061176	+	921.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4436.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	2.29632988874364	2.3085899384466	2.40847085303389	2.65707446023067	2.45639512113851	2.73522604269506	1.78876770864807	0.0332834827193378	1
Merged-chr10-98745816-2	chr10	98745316	98746316	+	846.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-168826.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.92845564543682	3.97473365429176	3.81871815477727	3.7149993559647	3.89583928271195	3.83699448132912	-0.291349213705387	0.573507974963776	0.870175995273265
Merged-chr12-112840366-4	chr12	112839889	112840889	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10868.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	6.71139490795604	6.7191467743278	7.0481116464625	6.80882718392551	7.06957682309521	7.20133962333759	0.317877716648938	0.237999051811519	0.634577778375799
Merged-chr9-110681934-2	chr9	110681434	110682434	+	877.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	25431.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	5.00142601435007	5.09031674342235	4.9312486086302	5.85844322568988	6.00859611974803	5.88420337944757	1.73888664837815	2.62131894551705e-07	1.66626972359498e-05
Merged-chr1-165734491-4	chr1	165733982	165734982	+	965.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR19-int|LTR|ERVK	-26388.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	6.06712007776793	5.29148221700186	5.45251662140215	5.75721978152719	5.71550897959136	5.71745276011483	0.128065472252384	0.733578518819327	0.932153005448542
Merged-chr5-134582701-4	chr5	134582216	134583216	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020022)	promoter-TSS (NM_020022)	26.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	4.6399115766408	4.5289074647556	4.57069401429274	4.7248474219295	4.52910539843125	4.75499010670003	0.20427380367986	0.621763288869694	0.8908398051148
Merged-chr16-91640384-4	chr16	91639899	91640899	+	841.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357351, intron 4 of 21)	intron (NM_001357351, intron 4 of 21)	6573.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	3.65103349763629	3.91576611104117	4.17235872870463	4.41849518096918	4.16466743521009	4.60344223512012	1.35081746541646	0.010028798955169	0.100599916029138
Merged-chr15-79895302-4	chr15	79894813	79895813	+	916.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001347041, intron 1 of 7)	intron (NM_001347041, intron 1 of 7)	290.0	NM_001347041	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	5.20041382042645	5.22553710068359	5.52572799136532	6.85668641798337	7.340204121846	6.54697694346661	2.83442930345065	7.01384042779021e-17	2.75852865699544e-14
Merged-chr7-100504779-2	chr7	100504254	100505254	+	951.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	10061.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	5.24042668240359	4.93097988181216	5.12904308881257	6.27278114938228	6.43578760763778	6.07783706541356	2.16074605171251	1.05487081876806e-10	1.40662966487264e-08
Merged-chr14-75190497-2	chr14	75189997	75190997	+	919.083374	f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-51790.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	5.74565457975446	5.47883121140192	5.73834174053598	5.74623822560342	5.53591167342003	5.82447595565963	0.0795743777133559	0.807858911539176	0.954583809755663
Merged-chr18-6137684-4	chr18	6137196	6138196	+	917.0499880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1598.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	5.50379172550428	5.71231720911384	5.85514459312983	5.47426921200528	5.88270216826355	5.60999261198779	-0.0258282241040543	0.939356052217927	0.986656947908622
Merged-chr10-87732200-4	chr10	87731702	87732702	+	952.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-126063.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	4.84210413558045	4.55563268860146	4.48019142869538	4.52203802647614	4.39315717674346	4.50446916839775	-0.422295300832147	0.329378969822203	0.721349826840182
Merged-chr9-59548055-4	chr9	59547529	59548529	+	875.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010421, intron 1 of 13)	L2c|LINE|L2	8489.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	5.97411914851527	6.20147635485628	6.56498797206787	6.22529406632018	6.01903590954128	6.37430849051094	-0.0906287603667789	0.776369225762827	0.94480820353868
Merged-chr6-15750267-3	chr6	15749754	15750754	+	920.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	29593.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.46112368943363	3.47857372019549	3.50189792509764	3.71162165564724	3.44722203843941	3.46138655058275	0.241036167542705	0.676109393166264	0.912421384593547
Merged-chr5-137032857-4	chr5	137032367	137033367	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001039385, exon 2 of 2)	3' UTR (NM_001039385, exon 2 of 2)	2572.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	4.22623252539151	3.98712581202362	4.52235051056846	4.14423184787128	3.85096498361622	4.39446665985169	-0.31976309398902	0.542153470948621	0.857034750433211
Merged-chr2-175142005-4	chr2	175141467	175142467	+	917.366699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	64950.0	NM_001164689	626832.0	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	3.82573822968039	3.80195677274542	3.95611666517186	4.04354336916952	3.87063145905861	3.60028228706182	-0.0053574541446624	0.992072345561369	0.998383635246733
Merged-chr19-6304936-4	chr19	6304463	6305463	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1494.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	5.11334262740031	4.41241726287805	4.87139228252707	5.0633260630561	4.72467496198168	4.97275721556813	0.201166174733647	0.651934203813621	0.902896807825606
Merged-chr5-30867096-3	chr5	30866599	30867599	+	921.638916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001310516)	TTS (NM_001310516)	-2480.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	3.24803205847925	3.10495662310287	3.55769863458089	3.23157979067351	3.12509524567622	3.26002701773393	-0.430207342925054	0.506208637637788	0.838348406755321
Merged-chr4-109115132-2	chr4	109114632	109115632	+	610.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355190, intron 2 of 21)	RMER10A|LTR|ERVL	2904.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.32687998286286	4.24129553811672	4.23806152650394	4.49133981562325	4.06169672163525	4.56002426667818	0.286434587230739	0.549176275928588	0.860222940806916
Merged-chr7-105735430-5	chr7	105734863	105735863	+	856.033325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_133951, intron 1 of 6)	intron (NM_133951, intron 1 of 6)	1221.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	3.70933241033072	3.69147067872893	3.7376522417432	3.97558622935213	3.75150354950835	3.64590303711961	0.29390613834191	0.584928226076665	0.874773073549443
Merged-chr6-115675922-4	chr6	115675380	115676380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	8.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	7.87724625572235	7.98624396079122	7.96558394720189	7.7475548020493	7.8571142312421	7.93927715144153	-0.135704874386516	0.526730063349366	0.849629836409305
Merged-chr16-75767814-4	chr16	75767333	75768333	+	983.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1015.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	7.4000290120394	7.75201506515046	7.26857635015471	7.50613572687858	7.98527001741133	7.57644232686096	0.314817787108766	0.248788040445753	0.645819769301048
Merged-chr9-13518164-4	chr9	13517666	13518666	+	997.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	86805.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.97781876263	4.73723698296657	5.03431219514458	4.54467255351742	4.71881980194422	4.74237564246989	-0.560790206644063	0.165903719215392	0.541089092560861
Merged-chr4-136505500-4	chr4	136505043	136506043	+	891.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	35782.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	5.37477701761481	5.46719447918818	5.71699674598096	4.87933435829069	4.99407029383775	5.38791242862986	-0.855595366011876	0.023183783048532	0.178127025249
Merged-chr11-8568012-3	chr11	8567485	8568485	+	786.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001083587, intron 4 of 30)	Lx8|LINE|L1	96550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.88917500102757	5.74478332878565	6.15979293127833	5.62683608646248	5.83208817418259	5.51896966657778	-0.458541051511014	0.165363863186046	0.540248785895973
Merged-chr10-40094982-4	chr10	40094453	40095453	+	986.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114332, intron 1 of 5)	B3A|SINE|B2	47301.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.40853158096657	6.60594001073811	6.18783786313836	6.31752804584463	6.1041637415143	6.18349879190865	-0.36355032539741	0.210997619260795	0.603332337700291
Merged-chr11-6291679-7	chr11	6291160	6292160	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252282)	promoter-TSS (NM_001252282)	1.0	NM_001361903	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	8.54590675348144	8.5515383878022	8.31180954978298	8.68686029387442	8.73716673163362	8.20952499387765	0.131466730040304	0.585537895385255	0.875041527312205
Merged-chr17-25835249-2	chr17	25834749	25835749	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_144816, intron 6 of 7)	intron (NM_144816, intron 6 of 7)	1878.0	NM_144816	214951.0	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid like 1	protein-coding	2.76566777596231	2.45078393994567	2.85181231320031	2.75396439139777	2.57638426181168	2.80598052997919	0.0803087394798482	0.918600799828467	0.981830247255695
Merged-chr17-6106464-4	chr17	6105965	6106965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	-365.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	6.72198674134379	6.57177523898308	6.71503849263249	6.92871854415956	6.54455618773271	6.98602324371549	0.24542740757535	0.37223759728361	0.756099728816208
Merged-chr12-83703373-4	chr12	83702869	83703869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001362271, intron 3 of 11)	L1ME2|LINE|L1	14806.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	6.1545187181418	6.4105225930187	6.04284939026999	6.57144649584107	6.81761412862778	6.32675602844252	0.614835995525896	0.0415765612976687	0.255041194181252
Merged-chr11-44496272-3	chr11	44495790	44496790	+	992.033325	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-22674.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	4.2902933907194	4.52710002132007	4.34574220036616	5.35720692716504	5.30418112459114	5.57323712569207	2.26129823901072	5.2076751814839e-08	4.01966824212349e-06
Merged-chr2-181291166-4	chr2	181290622	181291622	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3156.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.42461166228322	5.31238690612039	5.53562701075587	5.99347205486921	5.96174663471202	5.68317989590657	0.877503443680764	0.00656555116748662	0.0746015963339291
Merged-chr19-10896022-3	chr19	10895500	10896500	+	695.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134129, intron 1 of 15)	intron (NM_134129, intron 1 of 15)	769.0	NM_001253843	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	6.00548220829191	6.11496520571821	5.60694603341405	5.81878314026509	5.94659731143056	5.98461345407642	-0.0421298395371708	0.895441793132296	0.975665889379756
Merged-chr7-17059042-3	chr7	17058596	17059596	+	916.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162950, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	-2417.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	5.06755685920318	5.28534116072708	5.41266689577605	5.51283437210507	5.59811662527168	5.94783689116399	0.835073497027236	0.0185213580811109	0.153646412171797
Merged-chr10-123360671-3	chr10	123360159	123361159	+	951.2222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252387, intron 1 of 4)	intron (NM_001252387, intron 1 of 4)	96583.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	2.77253955340289	3.47105683838225	2.93110176815686	2.46399477552606	2.58207151024061	2.53711603887469	-3.31093693843337	0.000697574987664333	0.013634911809625
Merged-chr7-19276979-4	chr7	19276477	19277477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_177691, exon 5 of 5)	3' UTR (NM_177691, exon 5 of 5)	3072.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	5.46808663970795	4.89081925766947	5.29226005650405	5.55995536746144	5.80862946675315	5.50953850101419	0.772583141777547	0.0389866668396865	0.244867344081872
Merged-chr12-31984819-4	chr12	31984322	31985322	+	869.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011158, intron 4 of 10)	Lx8|LINE|L1	-34577.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	2.87597282970698	2.94007452812773	2.69006452193267	2.98155122106756	2.85289901487196	2.95576832434609	0.409729430500632	0.568258475331965	0.868531823304055
Merged-chr7-127637103-4	chr7	127636612	127637612	+	879.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21840.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	2.65263941417468	2.47931697635438	2.55041736485418	2.78852337886493	2.55954213912556	2.81328602581539	0.878884100245762	0.257530759414749	1
Merged-chr14-55724570-4	chr14	55724093	55725093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2330.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	6.52784349351702	6.33526212246553	6.40564252187709	6.53647653635766	6.73801541663408	6.36848698289092	0.228545587271838	0.410114384067067	0.783116615634315
Merged-chr18-39185829-3	chr18	39185351	39186351	+	860.5	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	192706.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.24504002387997	2.35965532185326	2.41676922106956	2.41964290806439	2.4535034432494	2.55369467741297	0.859519774921159	0.294708376166192	1
Merged-chr13-105327099-4	chr13	105326614	105327614	+	854.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx9|LINE|L1	-32629.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	3.15900537768459	3.04483023683751	3.56694596810651	3.23686962878158	3.12822717123128	3.43619737607683	-0.00145692940983655	0.998256621393043	0.999590080903912
Merged-chr9-16215540-4	chr9	16215038	16216038	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	162693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	6.31520114645749	6.66244820422671	6.43056098807135	6.39552115046829	6.78553772046639	6.41453718697807	0.119473133736293	0.683768191187538	0.915479407206029
Merged-chr12-69515960-2	chr12	69515460	69516460	+	740.333374	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40410.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.69604557490353	4.43550080201824	4.71458047076084	5.04343164249136	4.72446534794776	4.74146423253252	0.539461813604799	0.197347079355176	0.585351148860567
Merged-chr4-9243683-4	chr4	9243194	9244194	+	995.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-25599.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	5.6376182624211	5.75048479073127	5.78223315775425	5.66388466798346	5.72868204835321	5.7424262528531	-0.0185277763642785	0.952122428345379	0.989068549972429
Merged-chr5-72170311-4	chr5	72169810	72170810	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2121.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	5.50914903297249	5.58225785118565	5.64943584934281	5.46583830146148	5.79606325840564	5.92976532201679	0.301112223167388	0.363787347144558	0.74933829766087
Merged-chr16-91917934-4	chr16	91917411	91918411	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	13719.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.24909108000089	5.08543046749414	4.98746140725192	5.38625551948285	5.30275867609242	5.08963513916145	0.315320799785482	0.38670281967313	0.767154667509758
Merged-chr9-99145937-2	chr9	99145437	99146437	+	681.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5726.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	2.47598550025088	2.37431629708006	2.55328358739737	2.47861251898827	2.36123087210198	2.30307185122004	-0.524477642577753	0.524668426150684	1
Merged-chr8-104111969-3	chr8	104111494	104112494	+	802.833313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009868, intron 1 of 11)	B3|SINE|B2	-6121.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	6.97176104754753	7.30710597306086	7.53277560970488	7.75519380604659	7.94260893511323	7.69121790916207	0.759389161629635	0.00329503519153836	0.0451537035931363
Merged-chr4-99484404-4	chr4	99483901	99484901	+	675.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-171898.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	2.16062961299534	2.29644421009005	2.14802170786952	2.29017077614228	2.22268712551975	2.41859819138189	0.712121971106641	0.41407188859449	1
Merged-chr17-23968868-2	chr17	23968351	23969351	+	840.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	6379.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	4.32034667840732	4.08867486503335	4.12453370174036	4.93547418871634	4.68385172336968	5.13639834322444	1.81634537328456	7.59517070736027e-05	0.0022490232631328
Merged-chr6-50385686-4	chr6	50385182	50386182	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	-2845.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	3.96869039935189	4.22383337955874	4.21810588379815	4.39169625691042	4.39890200379167	4.54035923519576	0.808695829767302	0.0798290992405415	0.373618355320868
Merged-chr6-127447791-4	chr6	127447284	127448284	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001346513, intron 1 of 5)	intron (NM_001346513, intron 1 of 5)	944.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	5.04925185087203	4.97642450137061	5.07026028623379	5.31052429141578	5.52328607051605	4.90949143396121	0.530704003598563	0.17000315174139	0.547289560416266
Merged-chr16-17461909-2	chr16	17461409	17462409	+	770.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001277231, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	9924.0	NM_007764	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	2.66372658905235	2.81903704565896	2.77846569658682	2.94240265892979	2.8131969003529	2.97292617429007	0.772201645855745	0.280772211798787	0.678846264691369
Merged-chr13-23706991-1	chr13	23706491	23707491	+	676.0	f1_c57bl6.idr	exon (NM_010424, exon 3 of 6)	exon (NM_010424, exon 3 of 6)	3863.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	5.12701731104208	5.345267717058	5.72287487920393	5.19344992965806	5.49092628133965	5.55758791834755	0.0233480559796018	0.950495507475067	0.988444308820256
Merged-chr7-126099188-4	chr7	126098720	126099720	+	868.6749880000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16809.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	5.24102215948908	4.96700134230753	4.98424212292292	4.61667082126258	4.40743474036793	4.6709911220996	-1.17934432156622	0.00371865799701071	0.0492945825418619
Merged-chr13-65531943-2	chr13	65531443	65532443	+	785.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	253089.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	1.65291890104747	1.66053726595891	1.90129560323478	1.52948876022882	1.50059159319614	1.50564237669047	-2.72496583002352	0.0293872123165659	1
Merged-chr4-41346630-4	chr4	41346103	41347103	+	974.974976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	-2393.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	5.85892708387007	6.03632742727994	5.86687377514531	6.02815911890004	5.81416367146983	6.06720044706073	0.0681548131739962	0.82183136351417	0.958023303204974
Merged-chr11-78245631-7	chr11	78245093	78246093	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009143)	promoter-TSS (NM_009143)	110.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	8.88443647218807	8.92816978257254	8.52509730424104	8.9372442912186	9.00893107533785	8.61245692488144	0.0991156003294123	0.672388196271267	0.910791121888058
Merged-chr3-98045990-2	chr3	98045490	98046490	+	865.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	32452.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.7689531487221	5.89176239902809	6.01507707114826	6.1047511798451	6.4448921357296	6.14210655179574	0.617741256904289	0.0408051179327934	0.251970659825335
Merged-chr11-117961773-2	chr11	117961273	117962273	+	760.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	7593.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	5.73577845320686	5.68532391238652	5.82371491888415	5.66980372100564	5.36145206166457	5.65765043985787	-0.342305811442556	0.292623589476639	0.689849199032898
Merged-chr1-57995984-4	chr1	57995478	57996478	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199007)	promoter-TSS (NM_199007)	4.0	NM_199007	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	4.4056634994197	4.76526877203255	4.88174064794606	4.5790577644536	4.55508259615232	4.69191211589318	-0.207205102569791	0.630660982528851	0.89479314930704
Merged-chr5-122054658-4	chr5	122054158	122055158	+	998.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR33|LTR|ERVL	-4807.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	3.55622937852006	3.62095639118791	3.65966811708553	3.77882684908526	3.53987967586719	3.72968474980077	0.244267871051734	0.657694001871406	0.904859102731141
Merged-chr1-64324194-4	chr1	64323704	64324704	+	950.787476	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-202815.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.51411324422657	3.94572874121094	3.90407871402402	3.43480976152739	3.21657943631931	3.5207280464107	-1.49420054488649	0.0146595077110851	0.130527988675151
Merged-chr8-70942205-1	chr8	70941705	70942705	+	629.0	f0_balb.idr	Intergenic	RMER19C|LTR|ERVK	10890.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	2.67810344845518	2.70217380999639	2.83740271533851	2.83965637807088	2.75513883891724	2.72582651277485	0.201307422817581	0.780986962560468	0.946107841200993
Merged-chr1-172376442-4	chr1	172375926	172376926	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026234)	promoter-TSS (NM_026234)	-105.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	7.1054979473738	7.18870114604442	7.06715718317501	7.08302194364076	7.2146714108204	7.04564482163955	-0.00367933619533863	0.98764317458942	0.997223245230291
Merged-chr17-34287898-4	chr17	34287417	34288417	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-146.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	6.57491583405758	6.72436474030633	6.64941055429006	7.51315289573787	7.82221602928936	7.04996905705697	1.29784837317104	6.73866561897546e-06	0.000285494342578264
Merged-chr12-98267059-2	chr12	98266559	98267559	+	803.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mus2|SINE|Alu	-1576.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	7.61009091958189	7.75102835883119	7.62915581263839	7.49199666278786	7.99288708130559	7.45541638911872	0.02358324868793	0.927572344969809	0.983591477911632
Merged-chr8-115616281-2	chr8	115615781	115616781	+	781.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	90613.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.22847779266619	3.08144882343393	3.65286700195498	3.3576626842516	3.138169472517	3.4221617952088	-0.112021660684897	0.86586628484328	0.968641478520565
Merged-chr5-17999860-4	chr5	17999360	18000360	+	981.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37290.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	6.17884164768706	6.48247553589624	5.79865914053561	5.78672863091615	5.9822134730655	6.23193885634815	-0.321131041884213	0.343778789975622	0.732572352000629
Merged-chr1-72717179-2	chr1	72716679	72717679	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	5919.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	2.82765096531719	2.83902498037626	3.05794057807856	2.76021538341207	2.72760390918719	2.71295473468289	-0.890963308251295	0.220225441741406	0.614599010846764
Merged-chr16-16524538-3	chr16	16524044	16525044	+	724.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2867.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	6.47644058819543	6.32696784055805	6.23738302602516	6.108311081145	6.2272055041361	6.25668812047499	-0.263217894799058	0.345277107583063	0.733669653925664
Merged-chr16-4474191-1	chr16	4473691	4474691	+	691.0	f1_c57bl6.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	48884.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	6.2444534349935	6.32015900743659	6.18070514299601	5.93012619157025	6.1479532858957	5.75956285677481	-0.480160471221156	0.110102858355943	0.443374081115101
Merged-chr5-64392669-4	chr5	64392190	64393190	+	982.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	75252.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	6.21678812936709	5.87004650325909	5.93697850620703	5.85772465344553	5.64353800152726	5.82739292467137	-0.436977941894808	0.163920923837827	0.537921290057498
Merged-chr1-55238000-5	chr1	55237496	55238496	+	854.7999880000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_175439, exon 1 of 1)	exon (NM_175439, exon 1 of 1)	819.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	4.48289607447564	4.40794048880016	4.3313806280057	4.13038057290304	4.23131842367856	4.35485866649473	-0.464990045910665	0.302457189716429	0.699118224399262
Merged-chr5-65881912-2	chr5	65881412	65882412	+	723.900024	f1_balb.idr|f1_c57bl6.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	18343.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.73344878966587	5.76322884820105	5.97951816400773	6.00299371504503	5.86951928831991	5.97239887314805	0.222080069875361	0.462812462187123	0.815451584827553
Merged-chr2-166906412-4	chr2	166905907	166906907	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023565, intron 1 of 24)	CpG	311.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	9.11084171334844	9.246981115462	8.670492253212	8.74101270890734	9.0688982792086	8.60111283762479	-0.291629538574472	0.251676102050309	0.649166592250291
Merged-chr6-42346133-2	chr6	42345633	42346633	+	720.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3695.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	2.81724840860272	2.77411400014626	2.91421157474623	2.73625603269592	3.04434285313822	2.8034977388908	0.204726345696774	0.777856851460469	0.945251190347279
Merged-chr2-153443951-4	chr2	153443454	153444454	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134300, intron 4 of 10)	CpG	525.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.20407689254522	3.68116397129135	3.72761842707441	3.54182287819062	3.42789949062625	3.84961024459203	-0.946143135158152	0.112218299168054	0.447496417002561
Merged-chr10-81142719-2	chr10	81142219	81143219	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	6448.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	3.95334775658719	3.72572143183315	4.43853102620558	3.84898604321302	3.95273349947379	4.14142327665989	-0.237477656235796	0.667903682367198	0.908933640848663
Merged-chr12-110854994-4	chr12	110854487	110855487	+	988.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	4708.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	6.4871882492854	6.32397624765921	6.23394640259788	6.30274068820601	6.21156210120036	6.02609184726585	-0.276411174089149	0.332448965952051	0.7236354816998
Merged-chr3-59202370-6	chr3	59201849	59202849	+	762.56665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-7245.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	4.70714855466514	4.59363491565482	5.00860786322607	4.48520419350575	4.68067776546886	5.00762197685944	-0.0876257879386931	0.840524438828748	0.962819298477451
Merged-chr15-82346908-4	chr15	82346470	82347470	+	863.035706	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026914, intron 1 of 2)	intron (NM_026914, intron 1 of 2)	924.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	6.7268973226566	6.88132625122783	7.09173632637862	6.93028271967297	7.1879497282261	7.25483901716203	0.349311693292131	0.181146947399035	0.563429844466914
Merged-chr6-4988784-1	chr6	4988284	4989284	+	592.333313	f0_balb.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	85464.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.29258469817877	3.07959895956077	3.00179651868954	3.02842470741072	3.06455552859031	3.13531461469001	-0.264904017273632	0.689687007337154	0.917465651582893
Merged-chr7-43607764-1	chr7	43607264	43608264	+	543.0	f1_balb.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	595.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	4.12746838374045	3.96045745931836	4.01416113923739	4.26310334048106	4.41142036743215	4.03356111978539	0.61524393557742	0.207227473476947	0.597987987274834
Merged-chr15-65824989-2	chr15	65824489	65825489	+	660.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_133766, intron 5 of 22)	intron (NM_133766, intron 5 of 22)	37969.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	2.81043726148107	2.73654712009916	2.8480586416223	2.8215035402307	2.84405865467777	2.9790219506182	0.420906071299181	0.549653046871304	0.860418224514486
Merged-chr17-40654016-2	chr17	40653516	40654516	+	919.166626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur2|LINE|L1	21941.0	NM_001251916	100126766.0	Mm.471591	NM_001251916	ENSMUSG00000093957	Esp3	Gm21945	exocrine gland secreted peptide 3	protein-coding	2.94335121643037	3.07075894398779	3.08345250798865	2.99184722863363	3.25721157075198	2.97457749221088	0.251090065680318	0.711686877940738	0.92478339732604
Merged-chr10-117818190-2	chr10	117817690	117818690	+	876.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_024457, intron 6 of 7)	B1_Mm|SINE|Alu	-25485.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	6.28907453905823	6.28923771970141	6.05547452615144	5.95751292937919	5.89645340112359	5.82313024777056	-0.562382823675978	0.0542323738079263	0.299079907288926
Merged-chr15-50705452-4	chr15	50704951	50705951	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001310481, intron 4 of 5)	B3A|SINE|B2	183598.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.35224235821209	4.37656225198621	4.04297103644057	4.46871960302425	4.28387970844131	4.4442390342009	0.316720857705297	0.496126222220437	0.832884389427821
Merged-chr10-25119256-4	chr10	25118753	25119753	+	996.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	80917.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.61253513238693	3.42384530918467	3.54972542987786	3.53462555770733	3.44266789672899	3.45607964189393	-0.192051107031874	0.737962580874596	0.933858424870961
Merged-chr12-113114941-2	chr12	113114441	113115441	+	634.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001346696, intron 2 of 19)	intron (NM_001346696, intron 2 of 19)	16663.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	3.51322437699323	3.7951911508513	3.85624983751372	3.47690921115844	3.30297049368772	3.57679806374778	-0.993556008280569	0.09130351284734	0.402116270417692
Merged-chr7-115020225-4	chr7	115019691	115020691	+	931.8250119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	68917.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.35015767253809	5.36012220277979	5.64954613990898	5.49456187853933	5.460966393208	5.98640043354311	0.387988294734094	0.280156126039014	0.677926210657904
Merged-chr19-5964229-4	chr19	5963725	5964725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-19.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	8.08910169851761	8.26655953576364	7.78863715507492	7.96895648817582	8.12665803390824	7.34724064040148	-0.285342137250083	0.325142212480816	0.717970213571373
Merged-chr12-99392141-4	chr12	99391652	99392652	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_183186, intron 1 of 5)	CpG	57922.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	7.38392555506507	7.51231204329859	6.90481723183695	6.80021857592785	7.26362456150602	6.88759157029468	-0.439424698074468	0.134633886164262	0.490439383589701
Merged-chr16-36067604-1	chr16	36067104	36068104	+	596.0	f0_balb.idr	intron (NM_027342, intron 1 of 4)	B3A|SINE|B2	3911.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	5.44327758922689	5.30377603571589	5.25695477616775	5.68514875254365	5.79824842889107	5.38805105076907	0.582612968220746	0.0892182898254471	0.396797020674317
Merged-chr11-68655742-4	chr11	68655260	68656260	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36155.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	7.10802494734966	7.44477425547976	7.35696280076021	6.86358909213763	7.23403987029933	7.31732592051386	-0.237471155469042	0.370484743771306	0.754838358760403
Merged-chr9-44515379-6	chr9	44514865	44515865	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	11056.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	6.4676603886008	6.40788144122924	6.7742718035789	6.56862749681983	6.93224495434557	6.61282938178992	0.275043553681639	0.333071791655811	0.723964294628694
Merged-chr2-61734425-3	chr2	61733918	61734918	+	755.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021526, intron 3 of 11)	intron (NM_021526, intron 3 of 11)	22724.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	2.96841707846389	3.23796624794745	2.94934861168756	2.87299711839263	2.72099725045888	3.02254633026073	-0.918614411699698	0.202202603222696	0.591924044986784
Merged-chr15-100080996-4	chr15	100080479	100081479	+	888.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_037311, intron 3 of 3)	RSINE1|SINE|B4	42315.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	7.00671692011781	7.2763872160889	7.14483390807074	7.29553621463591	7.45764422547165	7.19009883680483	0.264646425287798	0.280396914787136	0.678293644376195
Merged-chr5-135189969-2	chr5	135189469	135190469	+	630.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_011714, intron 1 of 18)	intron (NM_011714, intron 1 of 18)	2646.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	3.01300252160352	3.14731370024319	3.43777588943496	3.02054860580967	2.9131105961123	3.4065085831448	-0.344421553978375	0.623251489092586	0.891344246843871
Merged-chr5-121837079-4	chr5	121836572	121837572	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-213.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	8.65924301307519	8.70369277731995	8.56950793316017	8.17758118509422	8.32746534966908	8.17324152005562	-0.578795709496855	0.00460909375799447	0.0578888261758798
Merged-chr13-20313628-4	chr13	20313190	20314190	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-159300.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.21055574582344	6.17260809461294	6.21879501372027	5.81161840464436	5.83034862517255	6.31677018792558	-0.353096835032193	0.256876086155995	0.654023603221078
Merged-chr19-11989517-4	chr19	11989019	11990019	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033174, intron 11 of 13)	intron (NM_001033174, intron 11 of 13)	23675.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	5.09036426567258	4.6893103257765	4.64218304714103	4.59472136790254	4.31629619704081	4.70903483234554	-0.685190522346334	0.121834161408774	0.466889738981312
Merged-chr11-116142113-1	chr11	116141613	116142613	+	552.0	f1_c57bl6.idr	TTS (NM_172571)	TTS (NM_172571)	-3245.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	3.5019744302912	3.36286310423165	3.3748578010671	3.41927879476405	3.08830036177695	3.33319561994304	-0.527381548364087	0.398245166191164	0.774939402456313
Merged-chr10-20776840-4	chr10	20776317	20777317	+	933.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-51739.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.37328743568769	4.26789663225911	4.24353619708126	4.63758108548733	4.41713324254474	4.44858321735775	0.527758371287913	0.232546101547114	0.628828962904432
Merged-chr13-12251925-4	chr13	12251430	12252430	+	821.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081128, intron 2 of 32)	intron (NM_001081128, intron 2 of 32)	6183.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	4.46257661605677	4.42559653262478	4.08116439131875	4.50192819330419	4.51966275759082	4.30309242465113	0.271283062201485	0.558515067866865	0.864722646301276
Merged-chr11-5099312-4	chr11	5098817	5099817	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	44.0	NM_177370	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	9.07171172758523	9.1788177118177	8.92119826713484	9.01043293097985	9.09923244777549	8.8384936835363	-0.10067216353975	0.626869634207682	0.892975730763041
Merged-chr1-161494534-4	chr1	161494048	161495048	+	923.0208130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_183391)	promoter-TSS (NM_183391)	-109.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	4.25781370164051	4.36914856065637	4.1844421074461	4.12026746751119	4.11397591517053	4.83550562893495	0.305618256075947	0.554047721585327	0.862575362378324
Merged-chr9-107535367-2	chr9	107534867	107535867	+	803.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019704, intron 1 of 1)	intron (NM_019704, intron 1 of 1)	1422.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	3.98983377045991	3.84493828048235	4.10289966704437	4.16922939807034	3.80291940515621	4.03114388431394	0.0815734475440989	0.87369011405851	0.970440430875665
Merged-chr3-88609720-2	chr3	88609220	88610220	+	912.2999880000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F2|SINE|Alu	-6487.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	5.36633174709913	5.61343451537016	5.63940950241411	5.65278405532698	5.60396058894931	5.62073593880548	0.158157048211678	0.626426666684421	0.892916235446326
Merged-chr6-149357293-4	chr6	149356785	149357785	+	983.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	47871.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	4.09970680747225	3.70035576160984	3.60466075120853	4.3754185503444	4.2868019236286	4.26008927975289	1.38629012883816	0.0110931580225411	0.108196806876504
Merged-chr11-3190110-9	chr11	3189620	3190620	+	962.0184939999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030207, intron 1 of 32)	RLTR33|LTR|ERVK	3343.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	6.6088161359858	6.92952180244856	6.82526951368526	6.49273175632101	6.33991745682153	7.58151876658591	0.234802563393982	0.700428719371758	0.920919335036368
Merged-chr9-64703060-4	chr9	64702515	64703515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	34741.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	6.49054255415386	6.10405710502892	6.30345686500997	5.66700324607809	6.24930994153668	6.3817525159646	-0.293360648187938	0.386031077362612	0.7668275851124
Merged-chr11-67025066-4	chr11	67024588	67025588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291042)	promoter-TSS (NM_001291042)	-66.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	4.49268519162098	4.906006877868	4.90870990570608	4.80282294984658	5.00198246337119	4.70779510589262	0.162670602061188	0.698704248904498	0.920452297723992
Merged-chr5-122763803-5	chr5	122763435	122764435	+	774.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_145358, exon 2 of 16)	exon (NM_145358, exon 2 of 16)	15475.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	3.31340254021799	2.98451590864309	3.0474596028065	2.74574811134276	2.43256553938438	2.67687669791975	-3.00619056269838	0.000909788924206384	0.0167518736015412
Merged-chr5-99359436-2	chr5	99358936	99359936	+	669.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-106509.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.90005090237908	5.39365970714049	6.10695557363598	5.8045793845983	5.71347117777313	6.14700825782653	0.121013173221197	0.738713615077244	0.934076171770342
Merged-chr15-84996076-4	chr15	84995592	84996592	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8121.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	6.48822977836188	6.49919867371904	6.58439833661785	6.83550382046507	6.51778623945399	6.53994015949449	0.188891928680468	0.482713518019834	0.825756592327344
Merged-chr3-122943770-2	chr3	122943270	122944270	+	762.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_133857, intron 14 of 15)	intron (NM_133857, intron 14 of 15)	19373.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	2.5713837675416	2.40040292085065	2.35892319971139	2.4962574858258	2.41937595226809	2.75024097564694	0.641880048961876	0.436581486573135	1
Merged-chr2-129515840-3	chr2	129515411	129516411	+	839.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	20691.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.13314736478592	6.55804354937511	6.29837440712483	6.0625956113731	6.25539476359186	6.08409120551791	-0.338968021370517	0.256432288760543	0.653552886970565
Merged-chr1-171453142-4	chr1	171452674	171453674	+	848.958374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	15613.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	3.75288202212898	3.79348257205346	3.80239188291228	4.92480111889782	4.83063511215629	5.09820972570348	3.26591503709623	2.453937976449e-10	2.98956473124991e-08
Merged-chr14-14013501-1	chr14	14013001	14014001	+	1000.0	f0_c57.idr	intron (NM_139227, intron 2 of 11)	CpG	1010.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	6.63129562936696	6.46775404152451	6.51516458439935	6.59020289926673	6.2687889376367	6.4673473432468	-0.157141698239655	0.566469441978085	0.867389339126889
Merged-chr11-32553646-1	chr11	32553146	32554146	+	943.0	f1_balb.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	20380.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	7.33919776365454	7.49267678223689	7.58281960960493	7.45742008257359	7.74202304824987	7.30541479032554	0.0764607677963535	0.758778323103445	0.940287421764314
Merged-chr19-32595183-2	chr19	32594683	32595683	+	544.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	-532.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	3.10849187623531	3.27961487441473	3.22760933459763	3.21475237238616	3.20635297012327	3.35458655796903	0.202854261151056	0.745472877905301	0.936177103310491
Merged-chr11-20133138-4	chr11	20132640	20133640	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-20189.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	4.65861737584809	4.54634009696276	4.78030024447149	4.29637002000928	4.70468960103719	4.57603236637475	-0.2800729647041	0.521460113569675	0.847076250198493
Merged-chr3-138489544-4	chr3	138489068	138490068	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175224)	promoter-TSS (NM_175224)	-186.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	6.77227499144701	6.92236024855191	6.78050096998801	7.0699303229411	6.63814622690205	6.82388836634676	0.0373665026146039	0.888960462698283	0.974207858658472
Merged-chr8-125286416-4	chr8	125285936	125286936	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	206397.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.08777416947257	6.01142163833807	5.57883513909544	6.09872056483943	6.36917550622325	6.13557269479115	0.490272379033803	0.126325687578056	0.475259203870093
Merged-chr8-128594306-4	chr8	128593811	128594811	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-91343.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	6.42431230863738	6.38214545843868	6.09605352207906	6.06053291083324	6.19028526135701	5.9928212424617	-0.381269468050181	0.19099208733084	0.577558823376959
Merged-chr9-41158283-4	chr9	41157758	41158758	+	974.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_176860)	promoter-TSS (NM_176860)	-196.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.77369644655836	5.735410972135	6.19894412547062	6.30008321816971	6.27368578468216	6.54384424803408	0.792766530873294	0.0106387330936208	0.104975156885889
Merged-chr6-39419171-2	chr6	39418671	39419671	+	757.625	f1_balb.idr|f1_c57bl6.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	605.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	5.83343405588378	6.11181818044724	6.1088999195185	5.96699889254946	6.01056312356374	6.41627901819076	0.196910949286313	0.531570326012135	0.851732204413779
Merged-chr6-85961856-7	chr6	85961343	85962343	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_028099)	promoter-TSS (NM_028099)	-176.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	8.5304144943749	8.90291377485878	8.5101874026468	8.4642718720204	8.61319178865499	8.57610588318752	-0.154983065289624	0.488865409370652	0.829423271678195
Merged-chr4-132816183-3	chr4	132815681	132816681	+	566.5	f0_balb.idr|f0_c57.idr|f1_balb.idr	Intergenic	Intergenic	-19817.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	6.69843464917224	6.54779030848761	6.82249999998342	6.70754710291809	6.94415432442098	6.79203470899064	0.212072502600055	0.416490724873262	0.787424967286687
Merged-chr1-74368828-2	chr1	74368328	74369328	+	1000.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	-6375.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	8.37417205053891	8.17506564182373	7.83982525840282	8.12966471852109	8.4024352411165	8.10678452199585	0.0970379135219682	0.694774787470193	0.919217788511748
Merged-chr7-126729050-2	chr7	126728550	126729550	+	982.083374	f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-24234.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	3.08398490367222	3.03080246993687	3.06894092287809	2.88548824558324	3.06188231457673	3.08247106488852	-0.218771887050534	0.742860126492891	0.935368371900894
Merged-chr11-105562657-3	chr11	105562160	105563160	+	705.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-27326.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	3.02904350872121	3.23667954140069	3.16215738805388	3.05695120300948	3.13923930116709	2.86436875359118	-0.503227714475229	0.46424802580407	0.816235256119365
Merged-chr14-17714595-4	chr14	17714043	17715043	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	53583.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.0154799180627	4.2446358297257	4.03847811040309	4.10524284972375	3.87095426701936	3.90598825287905	-0.423512862844097	0.397341538182574	0.774213064562936
Merged-chr11-70813179-4	chr11	70812667	70813667	+	891.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-606.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.313743589928	6.27857264450121	6.41938855590447	6.69077340615288	6.5383491266372	6.60138522076931	0.447575022251305	0.0901311045316854	0.399192470637807
Merged-chr4-36014277-4	chr4	36013768	36014768	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-169064.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	5.58272310896357	5.57247133726297	5.94913600914018	5.78675817100051	5.89324398857791	5.61130438337499	0.140439433257811	0.66986752332551	0.909776007587716
Merged-chr12-3866110-2	chr12	3865576	3866576	+	721.0	f1_balb.idr|f1_c57bl6.idr	exon (NM_001271753, exon 4 of 23)	exon (NM_001271753, exon 4 of 23)	-3832.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	3.31896841373532	3.63030402748949	3.76629843240062	3.30341196928528	3.56286710363228	3.58697573643189	-0.320655746792111	0.598411485789206	0.880780437003557
Merged-chr7-114414671-2	chr7	114414171	114415171	+	899.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	490.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	3.49249393875544	3.48917159082309	3.63672288207466	3.12149145076185	2.77304495460737	3.22616294381912	-2.18986085242073	0.00277230676069009	0.0396354125332476
Merged-chr2-73488184-2	chr2	73487684	73488684	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-2431.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	4.61096951991269	4.6157437961774	4.59878409901393	4.48898002225569	4.43776062342386	4.4996437937497	-0.336572477712988	0.418953158516439	0.788800615781234
Merged-chr11-63078195-4	chr11	63077691	63078691	+	934.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027660, intron 4 of 7)	intron (NM_027660, intron 4 of 7)	16532.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	2.98839635550443	2.99822847929078	3.11931822413411	2.92707765404443	3.12091871058208	3.01639639350065	-0.0250463152160657	0.97015020624213	0.993370394410681
Merged-chr7-25789505-4	chr7	25788991	25789991	+	845.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-758.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	5.29960007883713	5.11513157503374	5.75715795861263	5.68320373174823	5.27998119287926	5.69756044313599	0.294503053015455	0.44368522662009	0.803884349333946
Merged-chr15-90403802-4	chr15	90403277	90404277	+	916.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50067.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	2.25891348680836	2.11851870458875	2.31090356331294	2.36412677012582	2.21724078664178	2.44950280251221	0.772516896523083	0.370818032391591	1
Merged-chr13-100744626-4	chr13	100744137	100745137	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001190264)	promoter-TSS (NM_001190264)	22.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	7.82663101190206	8.17197557126342	7.73657425000047	7.84445268711077	8.21507570644638	7.46246358152353	-0.060064027897093	0.833133392806997	0.960955965465547
Merged-chr13-113596165-4	chr13	113595658	113596658	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22406.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	6.05238825548715	5.89800015875021	5.96649340203838	6.10735624737177	6.12422942708494	5.88151425666533	0.133428253861132	0.651533210561977	0.902854068288328
Merged-chr15-57928999-2	chr15	57928499	57929499	+	643.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	16800.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	6.28092883601736	6.21804129478372	5.86176395646146	6.19309234070546	6.44194795288467	6.27091669629477	0.27674620436511	0.356199473414897	0.743117973232815
Merged-chr1-52798878-1	chr1	52798378	52799378	+	585.0	f1_c57bl6.idr	intron (NM_008384, intron 2 of 5)	intron (NM_008384, intron 2 of 5)	18810.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	3.65574915735981	3.70384570010234	3.66994768158286	4.00989623355829	4.13704125253892	4.14043237050932	1.31944523065564	0.0104305341260894	0.103482041679224
Merged-chr3-157947087-4	chr3	157946614	157947614	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001359909, exon 1 of 12)	5' UTR (NM_001359909, exon 1 of 12)	114.0	NM_001013806	433667.0	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	8.78908497383457	8.95250700442115	8.59978131924466	8.68383152462135	8.737621018697	8.61915240931596	-0.151750703917954	0.471699948444963	0.820254709994237
Merged-chr14-63143671-2	chr14	63143171	63144171	+	764.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	21209.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.54106563388749	4.50267191951739	4.50093825671428	4.31709690429099	4.4379242450878	4.79575537580581	0.0160274180295351	0.971109848292693	0.993718751783969
Merged-chr8-117282758-4	chr8	117282267	117283267	+	976.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25748.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	6.2844210679882	5.85438709009406	5.6882949162563	5.76377708351166	5.83716923164277	5.30591825708425	-0.546910779583697	0.135212415503301	0.491308142526523
Merged-chr11-54921776-3	chr11	54921273	54922273	+	805.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18919.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	6.02700050091281	6.19150952836673	6.11100389378479	5.59657627638458	5.92931060565902	5.79819515425141	-0.566183197075929	0.0652968321594418	0.333101514948368
Merged-chr2-32577847-2	chr2	32577347	32578347	+	724.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_198191, intron 2 of 9)	intron (NM_198191, intron 2 of 9)	2129.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	1.89408272657022	1.75051511357112	1.94126788972185	2.07369177510884	1.87137126195723	2.15201614608987	1.44336357043898	0.150655297440619	1
Merged-chr8-25974004-1	chr8	25973504	25974504	+	643.666687	f1_balb.idr	intron (NM_029884, intron 1 of 17)	intron (NM_029884, intron 1 of 17)	2740.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	6.18786415791809	6.13788572280043	6.16373894122781	7.36719013030402	7.56659722463703	7.01454519787445	1.84699682327154	2.11899507418193e-11	3.24112761273034e-09
Merged-chr10-121461621-4	chr10	121461075	121462075	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	14675.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	8.1722966968732	8.15308866416891	7.89056748288617	7.58271543103022	7.54921727119735	7.145131949141	-0.908712011685164	0.000256778600191352	0.00614496225617544
Merged-chr10-44448258-4	chr10	44447764	44448764	+	926.81665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	10484.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.58228563514738	5.37017581478534	5.45150630746626	5.53846045177062	5.27688192873353	5.70399944565931	0.0648514119183461	0.851611802777374	0.965314553418056
Merged-chr13-112665516-2	chr13	112665016	112666016	+	744.666626	f1_balb.idr|f1_c57bl6.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	4750.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	3.90222875002139	3.92729576769251	3.97456517933344	4.77820092193489	5.01603640085554	4.91362371912977	2.59604691380855	2.98752127440428e-08	2.44670935236842e-06
Merged-chr3-81041151-4	chr3	81040645	81041645	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019971, intron 1 of 5)	Tigger15a|DNA|TcMar-Tigger	4729.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.15926693392346	6.95006893368271	6.41502666409369	6.19131367703357	6.27756235774979	6.2589699430151	-0.51690587406852	0.115641265166174	0.454022364177327
Merged-chr19-56723473-4	chr19	56722941	56723941	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	1069.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.56167245598802	7.63251114897546	7.75574518783397	7.67384829851458	7.54335170190528	7.55994185735946	-0.0799719075642879	0.719396414150497	0.927853440007355
Merged-chr6-108773111-4	chr6	108772686	108773686	+	759.666687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9873.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	2.32455579108215	2.32822730577799	2.61190133686892	2.37543877587694	2.22199698108411	2.62552554364749	-0.0653457813524567	0.93930691501405	1
Merged-chr5-117357691-4	chr5	117357194	117358194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_021539, intron 1 of 8)	CpG	389.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	8.36008769469485	8.42773448774486	8.08878929600942	8.29855398829921	8.12163338384148	8.05010178236895	-0.201442075835759	0.369887105651168	0.754352114878
Merged-chr12-111038460-4	chr12	111037995	111038995	+	848.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-1303.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	8.10242946522647	8.51488658833014	7.95538048639968	8.47034272483071	8.74107906188176	8.33371642707388	0.432668719304992	0.0918481780645585	0.403690568179321
Merged-chr2-91193358-2	chr2	91192858	91193858	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001355279, intron 2 of 9)	intron (NM_001355279, intron 2 of 9)	1677.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	5.07037205580015	5.45313062950585	5.911828236752	5.92639829312649	5.91997759966101	6.15917411872855	0.887450762616979	0.0176026434791815	0.148337123619175
Merged-chr18-14782143-2	chr18	14781641	14782641	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1F1|SINE|Alu	-1104.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	2.84631987243096	2.83534072131312	2.79476164964948	3.09555424157926	3.00293310721294	2.99394671371324	0.991792582770404	0.151247057247658	0.518506648409409
Merged-chr2-71211737-4	chr2	71211269	71212269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001198878)	promoter-TSS (NM_001198878)	63.0	NM_001198876	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	5.47011974386942	5.91725034937307	5.79338958587845	5.51661310700209	5.30605694242266	5.57079709603753	-0.529799003224857	0.124482899997376	0.472098928006171
Merged-chr16-30308846-3	chr16	30308321	30309321	+	786.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1960.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	2.87304036655093	2.64239602060022	2.54936041874213	2.77146374497413	2.50309684239657	2.99603962782606	0.373045407173166	0.645317579349134	0.900494476554743
Merged-chr17-23654174-2	chr17	23653674	23654674	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6332.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	2.59891356899955	2.52906217622732	2.63179739508951	2.71748834849442	2.70229840134834	2.76739784504657	0.797183385811886	0.285557152470007	1
Merged-chr13-13589591-4	chr13	13589094	13590094	+	929.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-815.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	5.06514225693548	5.36574604573388	4.87638173544918	5.4870832277081	5.64067022877436	5.2105192445566	0.667420360483967	0.08283207567173	0.380747505938201
Merged-chr5-135581721-2	chr5	135581221	135582221	+	551.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-8672.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	5.19238020074004	4.72362745414463	4.43771513724072	4.47719640382789	4.60116133836728	4.31193674373568	-0.839791873355207	0.0772871252992659	0.366642367269174
Merged-chr11-63129659-4	chr11	63129149	63130149	+	972.2000119999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001302261, intron 1 of 3)	intron (NM_001302261, intron 1 of 3)	667.0	NM_001302261	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.78415492668899	4.6536189298133	4.63506500633767	4.80828171547112	4.90618848507446	4.57390581911303	0.198120207198058	0.628203464369209	0.893561384376101
Merged-chr4-126262213-4	chr4	126261713	126262713	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-192.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	8.36839672250216	8.47728841133745	7.78284154546251	8.12162310877335	8.35847531229002	7.83902429277215	-0.170582924307381	0.542476786082093	0.857215724715019
Merged-chr6-125147010-4	chr6	125146513	125147513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1789.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	7.06775806649217	6.95386779274536	6.78698432486012	6.84398563871088	7.09514366881281	7.08474479559636	0.10021235732591	0.693762380293474	0.919037099765495
Merged-chr1-125432630-4	chr1	125432128	125433128	+	828.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	3099.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	6.73438043713318	6.6976932886771	6.40951403503581	7.20538444632751	7.53636747275543	7.03292166848805	0.998965173078937	0.000334270851121141	0.00761718016607167
Merged-chr15-86182077-4	chr15	86181636	86182636	+	928.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-3592.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	6.54889156481368	6.17472098960438	6.1082743355523	6.48332093407554	6.41432463978733	6.1918447843796	0.122228721938926	0.683481137264218	0.91544489198186
Merged-chr1-191325369-2	chr1	191324869	191325869	+	739.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-596.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	4.24692552005523	4.31699084696561	4.45786430965005	4.71640351930908	4.47585865754069	4.48260589890939	0.574716559244052	0.189643077028582	0.575646702603018
Merged-chr14-45050325-4	chr14	45049843	45050843	+	967.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	62232.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	6.35366748434298	6.16688550294201	6.27061675294697	6.32381097034348	6.15683926014639	6.27069108349978	-0.0283029342479325	0.919104136377918	0.981919714704164
Merged-chr16-14135240-4	chr16	14134722	14135722	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081154, intron 13 of 26)	ORR1B2|LTR|ERVL-MaLR	24052.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	5.95343280443342	6.12724615015846	6.03108037636127	5.8059829064831	5.98075051696938	6.09166469985585	-0.138168330431451	0.642480633133652	0.899416678249351
Merged-chr13-74807186-3	chr13	74806679	74807679	+	929.4166869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001301153, intron 1 of 31)	intron (NM_001301153, intron 1 of 31)	781.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	4.79974923963539	5.14715395521544	4.6915501108235	4.88428993780884	4.84971507968973	4.53885298245833	-0.288556758683384	0.496492664820515	0.833052561713032
Merged-chr9-41088139-4	chr9	41087656	41088656	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_176860, intron 1 of 13)	L2b|LINE|L2	-8650.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	4.98871598146172	4.51875244817471	4.73810713857606	5.34256500334224	5.02993136565572	4.76450497220637	0.670757566334734	0.118572430173936	0.460027973177699
Merged-chr12-76373162-3	chr12	76372576	76373576	+	915.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_178744, intron 1 of 1)	PB1D10|SINE|Alu	2810.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	3.54877260832575	3.85705105108875	3.82170548058888	3.71510622064476	4.22050099836683	4.03764333756685	0.81756085322963	0.141059299490201	0.501806848737951
Merged-chr10-127674946-4	chr10	127674382	127675382	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	-2183.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	5.29934660173464	5.20428145366058	5.52776910376809	5.49356578376985	5.8149395129895	5.47572224681976	0.527156999250474	0.129971447646863	0.482173945088832
Merged-chr16-36659365-3	chr16	36658849	36659849	+	565.666687	f1_balb.idr|f1_c57bl6.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	6728.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	3.38870187696079	2.97830417664512	3.11116064689282	3.23981613909324	3.05958576162181	3.18421287535338	-0.0551207612885683	0.934423360072897	0.985707838096286
Merged-chr1-9548826-4	chr1	9548324	9549324	+	983.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	876.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	5.69645521935402	6.21813404518173	5.60203392135887	5.40464215847964	5.55524472976303	5.21280489975496	-0.867786393789972	0.0186735292788521	0.154544163938206
Merged-chr1-180944798-4	chr1	180944319	180945319	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2301.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	5.59767102535839	5.60183200740901	5.96264291802973	5.58643465924297	5.68207599797804	5.33128362196678	-0.311650365294299	0.36372447465598	0.749321188432902
Merged-chr4-126412735-4	chr4	126412236	126413236	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153402, intron 2 of 18)	RMER19B|LTR|ERVK	16806.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	5.46455441247534	5.75849494630752	5.63334396176106	5.37736269579582	5.33445003307511	5.24736676080206	-0.578048602986121	0.0864576560357357	0.389452611705365
Merged-chr10-127324161-2	chr10	127323661	127324661	+	627.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_146011, intron 1 of 14)	MLTR14|LTR|ERV1	454.0	NM_001359656	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	6.16058506427748	6.29812288605786	6.53925216596353	6.58666482411346	6.86027805596387	6.59843922863308	0.584575211179443	0.0378249293985021	0.240511747317023
Merged-chr14-25379107-4	chr14	25378609	25379609	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-80076.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.39287229610112	6.60546093211073	6.11142930753558	5.90169101816253	5.64890720384211	5.53529027581825	-1.18123274408535	0.000236086853671333	0.00572553626356288
Merged-chr7-102100285-4	chr7	102099764	102100764	+	879.2291869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001291354)	promoter-TSS (NM_001291354)	-35.0	NM_007491	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	4.16016331821021	4.1919463170194	3.7596005206976	4.10967057217709	4.28577173887325	3.99799152525102	0.231893881824698	0.656017387444524	0.904520810952906
Merged-chr18-4351422-3	chr18	4350910	4351910	+	936.5833130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1543.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	6.98430329478085	7.16232363287084	6.86026845435606	7.32752060600314	7.21746847009977	7.20240071172701	0.353468211271165	0.148352725177147	0.513915084072171
Merged-chr7-28765361-4	chr7	28764876	28765876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001306222, intron 1 of 5)	L2a|LINE|L2	1268.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	8.47190819344475	8.44643367047327	8.2016437773555	8.44941749616095	8.75785631819798	8.17486762260487	0.150689451665213	0.540421435292558	0.85632302227606
Merged-chr19-6271051-2	chr19	6270551	6271551	+	732.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5845.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	3.57759712162917	3.69967370543083	3.3313685672816	3.89884319743281	3.3905947907477	3.69296048501079	0.429507607416789	0.486152738444645	0.827675186407947
Merged-chr12-111931482-2	chr12	111930982	111931982	+	582.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	13000.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	5.34008457952098	5.29188327081412	5.34551420298693	5.27376383811217	5.15406496875898	5.65474013842213	0.0769208581155826	0.831337619795068	0.960444904168444
Merged-chr14-45291842-4	chr14	45291321	45292321	+	975.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015774, intron 13 of 15)	intron (NM_015774, intron 13 of 15)	26751.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	3.46589381178188	3.59927161165885	3.50711874938924	3.54487124038144	3.40765329213203	3.5777686669877	-0.0723457291249198	0.899252540453916	0.976545244735099
Merged-chr4-43555508-1	chr4	43555008	43556008	+	548.0	f1_balb.idr	intron (NM_011602, intron 5 of 56)	intron (NM_011602, intron 5 of 56)	7075.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	3.92506930118084	3.53803986685051	4.13835032748873	3.70173199656713	3.64455093422033	4.16307191073851	-0.106614631046627	0.856507140121937	0.966529239953755
Merged-chr2-22752707-4	chr2	22752203	22753203	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-21624.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	6.07933913578459	5.76726763955959	6.12903381754162	6.28393160711807	6.48022826251947	6.56083977666024	0.755016036850911	0.0107945102082374	0.106093740303215
Merged-chr6-38973390-2	chr6	38972872	38973872	+	555.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	54386.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	5.94559733212425	5.98780946799407	6.27939545986459	6.47288189164692	6.35421381965417	6.08761856067484	0.425732922176826	0.155634596732761	0.525463320143621
Merged-chr3-105055135-4	chr3	105054627	105055627	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1981.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	5.57059105229749	5.5144902122051	5.26142613465821	5.05008369761013	5.22101902207799	5.56180823591033	-0.350740219583859	0.338550451197893	0.728543936569625
Merged-chr12-85523928-4	chr12	85523425	85524425	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	50035.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.59482710072285	8.59012801449474	8.26143959395235	8.28966866164715	8.39936834115525	8.02139687147882	-0.339421568979513	0.145529400096942	0.508704853103107
Merged-chr9-108567465-4	chr9	108566956	108567956	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023247)	promoter-TSS (NM_023247)	-114.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	8.78672927096448	8.86060461499219	8.96063759572591	8.704181247576	8.86284252326532	8.76898446620524	-0.120496433526009	0.544379594151713	0.85765692399006
Merged-chr17-53479174-4	chr17	53478708	53479708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	-26.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	8.36057130198542	8.57701590296585	8.08372020305617	8.45293915910694	8.44636821388392	8.30817639613697	0.0598071367731457	0.79567250289448	0.95127344528235
Merged-chr6-84019304-4	chr6	84018826	84019826	+	869.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_021469)	promoter-TSS (NM_021469)	-60.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	5.22281544007045	5.48328433326554	5.84174048736977	5.18256244259522	5.12674111792627	5.17498372223428	-0.729608703705095	0.0506865976036426	0.286777030802228
Merged-chr3-89393788-4	chr3	89393295	89394295	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-417.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	6.7348535552862	6.85736579500549	6.79530290400804	7.14706728819633	7.47916213309185	7.20643937454307	0.75193137417313	0.0027542608150275	0.0394587696103321
Merged-chr4-134513671-1	chr4	134513171	134514171	+	641.0	f1_c57bl6.idr	intron (NM_001081099, intron 1 of 2)	B2_Mm2|SINE|B2	2672.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	2.23484277956117	2.33414007440647	2.56992835798389	2.76562651464461	2.50983007889884	2.64479672451447	1.6241910786624	0.0586628961459519	1
Merged-chr5-105623034-4	chr5	105622578	105623578	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-76891.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	7.18576271956948	7.05466173037875	6.61162325531134	7.19463720667338	7.44292386506068	7.06333931600822	0.399554498368925	0.156905713354204	0.527761038035113
Merged-chr3-96551461-2	chr3	96550961	96551961	+	801.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6496.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	4.17880400511899	4.31327078685881	4.01789241044722	4.38771055803747	4.72452986897679	4.6345757138262	1.05130454603791	0.0242342911026328	0.183267008458409
Merged-chr10-127312438-4	chr10	127311915	127312915	+	964.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	-629.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	7.96478251038467	8.01817872539377	7.76873328544581	8.19950474873332	8.54097163298624	7.85996174103001	0.443836188165611	0.0882175088573289	0.39424257355393
Merged-chr15-100462296-1	chr15	100461796	100462796	+	685.0	f1_balb.idr	Intergenic	Intergenic	-6715.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	6.12880641672623	5.69686788897185	5.63594657197577	6.28190059850558	6.35055183404956	6.13151170767466	0.7061654951668	0.0274348841364278	0.19745446785355
Merged-chr16-91363572-3	chr16	91363120	91364120	+	675.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9163.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	3.86880338285849	3.87994807140649	3.6688022798982	4.1526961305248	3.57540082819632	3.68502754246716	0.0570618760990248	0.920929833645874	0.982463724790289
Merged-chr19-6074103-4	chr19	6073592	6074592	+	974.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081041, intron 2 of 9)	intron (NM_001081041, intron 2 of 9)	3095.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	6.83664981855298	6.78070438187311	6.89959543926445	6.60272845753255	7.0764318255546	6.65005719374167	-0.0459389812175321	0.868252394276084	0.969642939011354
Merged-chr19-34248783-4	chr19	34248280	34249280	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007392, intron 3 of 8)	intron (NM_007392, intron 3 of 8)	6593.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	3.8929999690296	3.91585366864476	4.05984520859731	4.05016793883921	3.82538734532771	4.21621750712851	0.229478429496447	0.652137400999393	0.902896807825606
Merged-chr7-142388794-3	chr7	142388284	142389284	+	996.444458	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-914.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	5.57901076315199	5.66769079679672	6.02485577006395	5.5713268219355	5.76109254752052	5.93361055637326	-0.00199436350212145	0.995248253347262	0.998961028701257
Merged-chr7-4228509-4	chr7	4227980	4228980	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx10|LINE|L1	-9274.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.9240252800148	4.84401001419941	4.90553747989379	5.71495446233532	5.84356309631374	5.80006131143967	1.78109841912983	2.13960016622322e-07	1.38978806113272e-05
Merged-chr1-71103086-4	chr1	71102588	71103588	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-116.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	6.17796120281361	6.64023881203376	6.11809073973368	6.77308172503098	6.97006237263588	6.03159579437593	0.513830306956899	0.154904947293252	0.524183835210924
Merged-chr15-37135799-3	chr15	37135303	37136303	+	875.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-97233.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	3.62357515140351	3.8708823309919	3.80201702154954	3.71575423064344	3.66174582082339	3.55170111165278	-0.406839443129937	0.458531976699646	0.81309199380326
Merged-chr11-26601977-4	chr11	26601456	26602456	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MER34A|LTR|ERV1	-8036.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	7.57511358108398	7.41484778582469	6.89769532803001	7.62997842853119	7.63767282710132	7.21093585745333	0.258724806489732	0.371123490134341	0.75531854434738
Merged-chr19-29486737-4	chr19	29486228	29487228	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	35259.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	7.72561892928922	7.66477323394946	7.17897459672267	7.4179813029371	7.75863457173655	7.27447104036582	-0.0659391751425833	0.812775209644368	0.955776522477769
Merged-chr11-117195345-2	chr11	117194845	117195845	+	830.166687	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4316.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	7.40633734118686	7.54810444757705	6.89751648714617	7.55135996901275	7.73896752763525	6.97168875820917	0.217948773711687	0.489280380359248	0.829554412228382
Merged-chr8-24431497-4	chr8	24431011	24432011	+	717.825012	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	7435.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.68566148979062	3.46985502066462	3.40586472691749	3.43984875290511	3.37070237559405	3.83863304588266	0.100180922140548	0.869198714479196	0.969777123267097
Merged-chr1-64299079-4	chr1	64298558	64299558	+	912.9375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-177669.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.3142624308243	5.09858644648674	5.77284125933607	5.41370386563983	5.68537044684194	5.73845908030387	0.392794012823454	0.295134361238603	0.691990077927385
Merged-chr4-99120983-4	chr4	99120501	99121501	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001290636)	promoter-TSS (NM_001290636)	-86.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	6.55652790569603	6.39230271411185	6.42720550685453	6.97634613787429	6.11378079338162	6.22455781893351	0.0692022289832516	0.840480962521024	0.962819298477451
Merged-chr17-28218255-2	chr17	28217755	28218755	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10477.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	5.05268112578658	5.10063151336751	4.64830457197151	4.7971421916689	4.60991677157811	4.28656398932555	-0.840427281635647	0.0609176937836662	0.319760248823574
Merged-chr12-111149713-3	chr12	111149214	111150214	+	685.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-16656.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	2.95167685246287	3.06611000386205	2.83897351496289	2.88912618800329	3.04217183039485	3.0945328961818	0.2323281276291	0.736790651610889	0.933284983163126
Merged-chr3-88082000-4	chr3	88081523	88082523	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-28.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	4.69673250104002	4.0706887303923	4.23965274967219	4.56825253583832	4.19510123219225	4.16224664998404	-0.119917392579633	0.815149754718512	0.956370078970016
Merged-chr15-12306750-3	chr15	12306252	12307252	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14744.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	4.28110006141499	3.91606551778445	3.98906076276368	3.55701938112447	3.73666399203593	4.27868630249945	-0.551326017339858	0.343575106123974	0.732393104503009
Merged-chr9-63782267-2	chr9	63781767	63782767	+	593.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24273.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.01077366729089	3.19259660308242	2.86722568875412	3.09003985955435	2.76156667246931	3.18276953989537	-0.0628341507466113	0.931121134378175	0.984775837432654
Merged-chr8-124230646-1	chr8	124230146	124231146	+	986.0	f1_balb.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-748.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	6.14610013137148	5.9180440466493	6.38852359967575	6.79620916349057	6.70342560198747	6.71723129055182	0.955004188636494	0.000730175599984921	0.014116275865136
Merged-chr1-118567844-4	chr1	118567336	118568336	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359330, intron 33 of 39)	intron (NM_001359330, intron 33 of 39)	-60109.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	3.43302594265929	3.62393424834681	3.63892984500447	3.60712875179941	3.51868262079731	3.49415567230506	-0.0883744068386067	0.87626021483219	0.971251631220952
Merged-chr17-45506991-4	chr17	45506481	45507481	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_198608, exon 1 of 22)	exon (NM_198608, exon 1 of 22)	140.0	NM_198608	224805.0	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	6.44020870187998	6.26180955242729	6.308937495968	6.50391795215967	6.31600610801723	6.24683445566824	0.0366397938567317	0.894867694973603	0.975618128213251
Merged-chr11-117313221-2	chr11	117312721	117313721	+	564.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-18494.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.7015453115961	3.84713206637062	3.6670994118274	3.38299983186761	2.93346267560347	3.58095025636616	-1.56806125060313	0.0259670241142955	0.191090841293208
Merged-chr4-46585177-3	chr4	46584718	46585718	+	815.722229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	16711.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.98565411890412	3.93428897464067	4.05275312164302	3.3032648199177	2.97683280574168	3.40918987671725	-3.1514068125681	7.69151602819439e-06	0.000319040710704885
Merged-chr2-164936134-4	chr2	164935599	164936599	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-12120.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	3.54944797459113	3.48732423722062	3.48332036265855	3.61040191520215	3.77583900186968	3.43990823277172	0.415673832045078	0.47052861379694	0.819502771257263
Merged-chr2-32439357-2	chr2	32438857	32439857	+	920.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8206.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	3.15964357454194	3.13480205182718	3.23768380167425	3.17083892043395	3.20844091834369	3.13582223291386	-0.00346716486437926	0.995609746689744	0.998961028701257
Merged-chr11-46461592-4	chr11	46461076	46462076	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_134250, intron 3 of 6)	ID_B1|SINE|B4	6645.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	6.28612032414325	6.39060527318468	6.06902466011248	5.95458564149598	5.66069252723449	6.12982069349298	-0.595231008978533	0.0569106255973886	0.307554675242418
Merged-chr6-24967869-1	chr6	24967369	24968369	+	585.0	f0_balb.idr	Intergenic	RSINE1|SINE|B4	-11744.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	3.5517092195762	3.50921787679278	3.63915061607837	3.31651325935197	3.23419559115355	3.65850156330075	-0.593946602044019	0.326056982831916	0.718499720007363
Merged-chr16-91061764-4	chr16	91061270	91062270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	7375.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	6.95320141003192	7.01104888513425	6.16663711540411	6.68811322027536	6.68696333511036	6.2048439837182	-0.348449614531341	0.312628117164253	0.707282970526745
Merged-chr3-123329408-4	chr3	123328911	123329911	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027135, intron 9 of 22)	intron (NM_027135, intron 9 of 22)	56579.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	4.55888427720122	4.72092717729685	4.69121654070932	5.17830099093753	5.1589024644481	5.02462290065892	1.03925832453278	0.0067981986125428	0.0764824919081208
Merged-chr14-31432204-1	chr14	31431704	31432704	+	547.0	f1_balb.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3896.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.61458334404256	5.40001483675879	5.61374519661268	5.83503487469858	5.66187708701582	5.70287148923487	0.356210658284525	0.26706496935527	0.664531757479465
Merged-chr12-84751454-4	chr12	84750946	84751946	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	21666.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	8.32369678236126	8.59380540417015	8.10563367195024	8.45662940618891	8.69299920634204	8.06484888690221	0.105990409002258	0.688800943861534	0.917235946766438
Merged-chr11-115297106-2	chr11	115296588	115297588	+	546.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178035, intron 1 of 5)	intron (NM_178035, intron 1 of 5)	458.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	3.15216879685737	3.16902451688046	2.89682283170059	3.03313335826395	2.90333303565594	3.15305100959766	-0.249777080299336	0.716084399452127	0.926567177471454
Merged-chr12-112578845-4	chr12	112578369	112579369	+	821.31665	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-9915.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	3.3383162974311	2.99995180836652	3.25177998801603	3.18349351796678	3.10608432193882	3.26706348267318	-0.0845586169939473	0.896606357948752	0.975838835430135
Merged-chr11-6525851-2	chr11	6525351	6526351	+	722.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045893, intron 3 of 3)	intron (NR_045893, intron 3 of 3)	2909.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	4.26614899835661	4.11933047454224	4.45122026498488	4.1870995421468	4.06242359540826	4.43720836320352	-0.137241904439036	0.774500213373954	0.944477929413368
Merged-chr4-150912972-2	chr4	150912472	150913472	+	835.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3051.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	5.23992848906853	5.15743493259831	5.39536998943025	5.07774474569376	5.14416768540988	5.31143804496417	-0.17448728706839	0.624295016560239	0.891935778467452
Merged-chr1-39761563-3	chr1	39761055	39762055	+	897.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-40566.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	5.26620731594918	5.54099910799931	5.48462363762716	5.08699927266446	5.42169411009669	5.20961312155922	-0.351941389563522	0.326860736740133	0.719183905339082
Merged-chr14-70205107-4	chr14	70204590	70205590	+	981.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001271408)	promoter-TSS (NM_001271408)	-467.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	5.08387125398907	5.34025602048554	4.61028931397777	4.40902804014271	4.22058371684076	4.07450939701011	-1.9497436438843	5.23345941193446e-05	0.00164283111689888
Merged-chr1-135282318-2	chr1	135281818	135282818	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1766.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	6.74293896100426	6.81696731098362	6.75911613861617	6.95047476532764	7.03791367288365	7.08234478920503	0.384288824108224	0.113593435238322	0.450207898796814
Merged-chr5-106679838-4	chr5	106679361	106680361	+	921.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	16969.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	3.66796259440293	3.72085543516166	3.55718357404079	3.38274256247748	3.28369130584006	3.46298202374522	-1.05499010711036	0.0702743124358368	0.347250411178241
Merged-chr5-59845926-4	chr5	59845429	59846429	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	140073.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	3.88992915950079	3.95555713451265	4.14232668276906	4.04460363127092	4.01024023681029	3.87452971605242	-0.031322331068893	0.950113207565626	0.988400419899929
Merged-chr5-35722953-1	chr5	35722453	35723453	+	713.0	f0_balb.idr	intron (NM_001359895, intron 2 of 17)	intron (NM_001359895, intron 2 of 17)	6323.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	3.25478050811745	2.98378318188622	3.35752898078727	3.33819804808413	2.72980289684908	3.42859029612973	-0.00708927857886404	0.992621519505254	0.998523796268552
Merged-chr11-40755340-4	chr11	40754828	40755828	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009831)	promoter-TSS (NM_009831)	-42.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	5.85689832874333	6.11437880043655	5.82662383079608	6.15535589235341	5.98230587919427	5.86297396391513	0.10997872519004	0.720646575180622	0.928320221690591
Merged-chr3-90213703-4	chr3	90213206	90214206	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027015)	promoter-TSS (NM_027015)	-9.0	NM_001293741	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	7.67868598642379	7.95515027326721	7.36131810143057	7.52051290020464	7.76311515187034	7.36072543739581	-0.190686325807231	0.480377084225578	0.824543506620807
Merged-chr17-83640795-4	chr17	83640301	83641301	+	998.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8906.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	5.02555644179653	4.42904539183614	4.7133780957571	4.87776277501785	4.64064083862311	4.65843856878929	-0.0444004917731937	0.919868439569111	0.982120898917633
Merged-chr19-8968251-2	chr19	8967751	8968751	+	925.25	f1_balb.idr|f1_c57bl6.idr	exon (NM_026007, exon 2 of 10)	exon (NM_026007, exon 2 of 10)	1210.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	3.72865088704912	3.51391078186275	3.67423768469264	3.56601877949218	3.41495240318715	3.69285219446753	-0.302466965394734	0.594725209415013	0.87924603206665
Merged-chr9-44512719-2	chr9	44512219	44513219	+	864.0	f1_balb.idr|f1_c57bl6.idr	TTS (NM_030256)	TTS (NM_030256)	13583.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.7616861614297	5.91660407673627	6.15045435207415	5.84961926303883	5.96077924639868	6.26830044442891	0.149984394961095	0.63761406107144	0.89735407749672
Merged-chr7-89412390-4	chr7	89411901	89412901	+	708.75	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	8035.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	3.90999920465276	3.95740877977216	3.75655399108966	3.01544507710345	2.85825231050103	3.13694205634497	-4.74446832240344	6.90523395389333e-07	3.90333360621981e-05
Merged-chr15-65786095-4	chr15	65785550	65786550	+	799.791687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001356582)	promoter-TSS (NM_001356582)	-970.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	3.4886248942769	3.42306246397902	3.46826719235719	3.56449153848848	3.0632222192752	3.37238509787178	-0.43139940598611	0.498308043181983	0.833856267944725
Merged-chr2-132107790-4	chr2	132107289	132108289	+	912.68335	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37319.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	7.16847673822936	7.25210160378002	6.87612462155801	7.15545020721218	7.40923835822416	6.90422768513807	0.101163540541694	0.710950317253651	0.924511716032697
Merged-chr9-118721478-2	chr9	118720978	118721978	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	9786.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.39156696692642	3.11009379570003	3.53597934233078	3.07229051455191	2.9328700945374	3.29386318818112	-1.06304788638225	0.11743643481025	0.457559976947523
Merged-chr7-35065095-4	chr7	35064582	35065582	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8516.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	7.40085627637242	7.46952757433783	7.37271905125482	7.42606368039414	7.46719310495089	7.19645084002695	-0.060086045344716	0.796537823215831	0.951430675491237
Merged-chr12-3872328-2	chr12	3871828	3872828	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-10084.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	7.99980515621718	8.07759925725243	8.04065474780591	8.05951157403406	8.08087192596698	8.01677814006691	0.0202095697781944	0.921761725624195	0.982542868764899
Merged-chr19-42139966-3	chr19	42139482	42140482	+	750.972229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7407.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	3.26499728613233	3.4496243783946	3.17348204186396	2.98510654138686	2.98570170437771	3.12731330555024	-1.2169595658781	0.066216568488494	0.335919292207695
Merged-chr9-7870694-4	chr9	7870189	7871189	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007464, intron 1 of 8)	ORR1C2|LTR|ERVL-MaLR	2481.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	7.24542754355426	7.29172217454619	7.01706469221294	7.53440314211712	7.79390473985905	7.23399005189081	0.523613829603363	0.0477069824170813	0.276666988845996
Merged-chr3-102715425-4	chr3	102714876	102715876	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19394.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	4.9475462744624	5.10616790928515	5.20707951002948	4.98001706140709	4.77043364010822	5.20853283975453	-0.215817625530044	0.578482560745559	0.872437129840066
Merged-chr12-40551494-4	chr12	40551009	40552009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	105456.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	5.08321690805112	4.83995628421746	4.52406462281529	4.61581744033579	4.68736118757232	4.80054351919075	-0.337549257272292	0.42675228435971	0.793856563313275
Merged-chr10-98514994-4	chr10	98514501	98515501	+	902.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-163134.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	3.63686826755134	4.08947418413075	3.58806265269403	4.09570993618136	3.79506874142733	3.87772175907207	0.398914136853646	0.487685576190608	0.828589484699393
Merged-chr11-114673069-2	chr11	114672569	114673569	+	864.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_023372)	TTS (NM_023372)	-2399.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	2.43481103169457	2.44153779069469	2.64721311350173	2.80124473257093	2.4346852591666	2.8418995553949	1.0966294803973	0.177566844372023	0.558621573084323
Merged-chr4-3779109-2	chr4	3778609	3779609	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56546.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	3.93759677863116	3.84018209604862	4.03467174055108	3.897543487267	3.99885358873547	4.43814407012265	0.548132902208649	0.292535567259996	0.689750622855475
Merged-chr7-24373563-2	chr7	24373074	24374074	+	840.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3311.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	2.73613934277903	2.70111286160494	2.7936168217565	3.10321955235441	3.03040608578705	3.22236907043184	1.89265671453365	0.00865875721349819	0.0911798293411837
Merged-chr7-16264676-1	chr7	16264176	16265176	+	636.0	f0_balb.idr	Intergenic	B3A|SINE|B2	-5136.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	3.56451773198511	3.3971469239393	3.6305733305132	3.4861689983595	3.62861766354912	3.54215067897639	0.0973764799977309	0.864609301511446	0.968297921776544
Merged-chr7-35099695-1	chr7	35099195	35100195	+	738.0	f0_balb.idr	Intergenic	Intergenic	-19598.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.66935957576209	4.33442552767035	4.41215254164156	4.26634332143154	4.11650684719465	4.47917379291821	-0.516116929169988	0.266513863786787	0.664166899200562
Merged-chr12-3854199-2	chr12	3853699	3854699	+	585.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007872, intron 3 of 22)	B2_Mm2|SINE|B2	8045.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.52209612384307	4.96812557876902	5.38830011722887	4.93848484378932	4.99312494425362	5.22354254500886	0.116592307626158	0.792255733090203	0.949929758256028
Merged-chr19-46525615-2	chr19	46525115	46526115	+	642.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	23967.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.26433026263534	4.9126066364174	4.97903181023927	4.87622797492952	5.03845191159424	4.81625072280016	-0.307814982245379	0.430896928556885	0.796614699034595
Merged-chr2-167649515-4	chr2	167649080	167650080	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11964.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	6.0440831984332	5.85585539369579	5.80707724215517	5.69260438820268	5.15640479666751	5.45351200982261	-0.855050466815794	0.0134425882871431	0.123414763383697
Merged-chr18-4344498-3	chr18	4343983	4344983	+	754.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	8470.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	5.35843483071277	5.13599758270447	5.45439499894737	5.50556526893349	5.29526431814929	5.54465491352747	0.255427920686182	0.464819767932461	0.816595063921171
Merged-chr1-92905777-2	chr1	92905277	92906277	+	930.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1212.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	3.12929360236342	2.98546506296913	3.03015827380971	3.36151318936232	3.30548886070003	3.50141362084578	1.42825969310734	0.0273706020032731	0.197199155899935
Merged-chr14-65374988-3	chr14	65374493	65375493	+	999.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	16317.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	3.07823341445842	3.22351039097883	2.97333620992694	2.79227793249602	2.72031588925254	2.72675993732305	-1.81792900868266	0.0142158943840001	0.128083720269613
Merged-chr8-66391780-4	chr8	66391314	66392314	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	5513.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	5.99671979435619	5.98730124619202	5.89591680735274	5.89193770092616	5.94043623882912	6.33359191610326	0.164446012199896	0.594903447293349	0.87924603206665
Merged-chr11-55100088-3	chr11	55099590	55100590	+	916.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010299, intron 1 of 3)	MIRb|SINE|MIR	2105.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	3.33034880839444	3.24299037334635	3.1290943729971	3.21726121588729	2.97218822176076	3.20188663628087	-0.471486870353159	0.469489450299634	0.818977178978635
Merged-chr4-108457086-2	chr4	108456586	108457586	+	705.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	ID_B1|SINE|B4	-2340.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	3.9314065945738	4.10388615712311	4.0340430681268	4.08310395282879	4.20510624271246	4.19645776941691	0.395535049550385	0.409368767344165	0.782733045555046
Merged-chr13-20091440-4	chr13	20090973	20091973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080288, intron 1 of 21)	CpG	966.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	8.00292042029099	8.16008811202017	8.17321893077209	8.06306420258892	8.14608734025453	7.97594016743038	-0.064464616772662	0.761590398135858	0.941258867861232
Merged-chr5-120749902-4	chr5	120749401	120750401	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145227)	promoter-TSS (NM_145227)	-53.0	NM_001347448	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	6.87259912028803	6.97937616491745	7.13075676199975	6.83247028338254	7.1285369705828	7.17644405445437	0.0921833472369005	0.719575978453352	0.927917795122043
Merged-chr8-88137847-4	chr8	88137349	88138349	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	-36.0	NM_172757	234549.0	Mm.36291	NM_172757	ENSMUSG00000031657	Heatr3	C030036P15Rik	HEAT repeat containing 3	protein-coding	8.03312453060434	8.663596847354	7.93792331390568	7.79104379100976	8.04429793743432	7.66169953668098	-0.58512156228085	0.0395556839364897	0.247146225744187
Merged-chr8-94371594-4	chr8	94371109	94372109	+	866.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14820.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	5.58012785349413	5.32689918047179	5.77691163150722	5.42107178927724	5.5680625517225	5.69024072647318	-0.00571679370617122	0.986710332769855	0.997073310870088
Merged-chr15-31572518-4	chr15	31572034	31573034	+	950.6083369999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181588, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3701.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	2.72411413331525	2.61522933165705	2.93763756630327	2.5382612326235	2.38181612839531	2.45944037772064	-1.82405596886955	0.0280845736751526	1
Merged-chr7-45491521-3	chr7	45490995	45491995	+	770.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2690.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	4.24482023479911	4.2393603883522	4.50031788692077	4.70194564261798	4.96932799715814	4.8400134787077	1.27989600403456	0.00273247653703256	0.0392006737402423
Merged-chr7-19685507-2	chr7	19685007	19686007	+	971.25	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-4047.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	4.29841825935204	4.19357967226684	5.04184338881759	4.49114786412986	4.51570861294918	4.74778736043744	0.0641121047843346	0.898935275841266	0.976432549466174
Merged-chr1-177981516-4	chr1	177981009	177982009	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L2|LINE|L2	-9889.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	5.02681302936743	5.30111110069221	4.81984625186553	4.87796208252672	5.19993732988589	4.96472424388549	-0.0972759958678392	0.807716264396872	0.954557080558103
Merged-chr8-122281966-4	chr8	122281462	122282462	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-179.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.15618855385947	5.08066793529467	5.00712992724283	6.04433779700994	5.51794459951006	5.39089681166482	1.16810614113469	0.00199437679198617	0.0309200864743031
Merged-chr14-55745686-4	chr14	55745185	55746185	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	-1.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	6.88753931237026	6.95657615677895	7.10280915728452	7.02209419618808	7.13890410255604	6.94960897219055	0.0995560113027929	0.684673837742603	0.915936601728106
Merged-chr17-71213975-2	chr17	71213475	71214475	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	9321.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	4.44646625245986	4.61221806868054	4.86353063146669	4.40919975044713	4.36458997215161	4.6786194624298	-0.394863199645009	0.37223282237509	0.756099728816208
Merged-chr19-18639158-3	chr19	18638653	18639653	+	850.755554	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145497, intron 2 of 8)	intron (NM_145497, intron 2 of 8)	7137.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	4.58949856858781	4.48793360591594	4.25028044794491	4.04338644566158	3.64638755807542	3.80439480107421	-1.80457961817411	0.000532006952699612	0.0110144898034907
Merged-chr17-88064146-4	chr17	88063639	88064639	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	793.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	7.8599853473914	7.95916576402644	7.71179829470641	7.89375373923015	8.06812209751011	7.78561933451102	0.107041122617026	0.636668482389678	0.897212708358297
Merged-chr12-102297199-4	chr12	102296706	102297706	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001161365, intron 1 of 9)	RLTR11A2|LTR|ERVK	13565.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.97026662258887	6.24426865895478	5.85430161861846	5.3869734114943	5.54144164537398	5.30411321091548	-1.12213388547366	0.000734554385252165	0.0141877440315836
Merged-chr6-135175718-2	chr6	135175277	135176277	+	803.0	f0_balb.idr|f1_balb.idr	Intergenic	B1_Mus2|SINE|Alu	-7562.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	3.81036239242581	4.20223097919374	3.70945457407431	3.06742784741599	3.05186323962113	3.19076355433855	-3.63802233133589	1.47428429753991e-06	7.62412975945932e-05
Merged-chr6-54811799-4	chr6	54811292	54812292	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5124.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	5.38783401649961	5.39716517068845	5.88365732534671	5.57210630044704	5.48771065514142	6.0891912033057	0.30869684208319	0.412404044464679	0.784461927725322
Merged-chr6-124496169-4	chr6	124495657	124496657	+	994.2916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_181344, intron 2 of 5)	HAL1|LINE|L1	3044.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	4.93175040592773	5.08073779033985	5.23708927491169	5.02801046383269	5.02118473465999	4.9301241496228	-0.178455187782009	0.6325442923294	0.895571551612667
Merged-chr2-31731088-3	chr2	31730589	31731589	+	737.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-28850.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	4.55665091419501	4.29847820662685	4.43635501398332	4.49696894908241	4.25029166878349	4.46093145290991	-0.0868570851816222	0.845947820311375	0.963945177091542
Merged-chr9-53706465-4	chr9	53705969	53706969	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175562)	promoter-TSS (NM_175562)	-237.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.8379087863879	6.93264104141035	7.2249584019313	7.02823846322367	7.08774534844587	7.05298909079425	0.0877570380522454	0.728664658599885	0.930478966998914
Merged-chr11-120347963-3	chr11	120347471	120348471	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	524.0	NM_001313923	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	7.55443170033214	7.59611740418724	7.64362181012043	7.71732289280707	7.9123815845285	7.93991080608655	0.379245130269379	0.0852067949028859	0.386402946468995
Merged-chr7-19841522-4	chr7	19841001	19842001	+	992.041626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10502.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	4.50355088725067	4.51617099791373	4.57919459250533	4.34382856244466	4.37108377282354	4.39562713245814	-0.411913634751024	0.336284374950543	0.726311051846196
Merged-chr15-78328747-2	chr15	78328247	78329247	+	645.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	2757.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	4.42576687260033	4.31948044769794	4.39455217977081	4.49746019253127	4.5923686268417	4.27892088375909	0.238576533284515	0.589886696369633	0.877024090368969
Merged-chr17-23803042-4	chr17	23802532	23803532	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_175229)	promoter-TSS (NM_175229)	-155.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	8.44711393054962	8.48922065016308	8.18569350714968	8.44799240925565	8.36071222993136	8.12320480520765	-0.0888781063959972	0.692952232627922	0.91880752705484
Merged-chr2-120578494-4	chr2	120577993	120578993	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	10822.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	8.47599784657733	8.11160756557499	7.92327306880007	8.24791302405266	8.38260441093927	7.75284230108226	-0.0470131044336723	0.864986608488704	0.968537626667382
Merged-chr3-27207468-2	chr3	27206968	27207968	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	24464.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.11569424631616	4.0802132125786	4.45615850460451	4.05537670036189	3.92590155009509	4.28346659644941	-0.379732696183643	0.447385392811284	0.806404141026781
Merged-chr5-77386793-4	chr5	77386175	77387175	+	890.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	21370.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	2.67826790202768	2.4726371475275	2.7920263996775	2.55789519435247	2.60678580642256	2.68442364673174	-0.189992874961487	0.805789672415606	1
Merged-chr17-29549734-4	chr17	29549233	29550233	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	-69.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	5.32870867847575	4.8475838878137	4.52547745045796	4.54643622692662	4.54801067426133	4.35469650948361	-1.07049880711456	0.0219151654954806	0.171625137933925
Merged-chr12-113042067-4	chr12	113041559	113042559	+	891.5833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	27551.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	3.42696968917906	3.39348647869375	3.76546337088	3.38677242415652	3.21716443662281	3.59178087800399	-0.492793038576396	0.424544860241429	0.792697196836987
Merged-chr3-31107888-3	chr3	31107391	31108391	+	912.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	12833.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	5.2029744242306	5.29364279844249	5.12216803524297	5.40757157897049	5.42103009236272	5.32060111629704	0.345158973786564	0.31460419812829	0.708958249946571
Merged-chr11-54534053-4	chr11	54533551	54534551	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001252494, intron 1 of 28)	RLTR14|LTR|ERV1	11206.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	4.85778627695879	4.56446116830073	4.67183812279915	4.71897233174298	4.64723727208895	4.4836549105756	-0.188225407852821	0.65324473252654	0.903270202473883
Merged-chr14-75192946-4	chr14	75192439	75193439	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-49348.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	6.1568909436648	6.13563417423127	6.1748679531845	6.25480244687318	6.07828752640402	6.25537534089479	0.0641624746579157	0.819186036561863	0.957209935971094
Merged-chr15-64186885-4	chr15	64186398	64187398	+	889.095825	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	125775.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.37746384684352	5.36993752579664	5.34349981356339	5.10997101099045	5.32159576527747	5.18160357184598	-0.301259314840939	0.384636406374327	0.765823037135813
Merged-chr6-122636423-2	chr6	122635923	122636923	+	807.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	9999.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	6.32501499864386	5.9271948087373	6.17455585898777	6.78614841113872	7.0571517109422	6.92085955249627	1.2455177664406	1.04265620172185e-05	0.000415703580416252
Merged-chr15-6602635-4	chr15	6602129	6603129	+	958.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22782.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.97276464355805	6.81999603004404	7.07165090912955	6.90818942888162	6.72857103338059	7.04111173580764	-0.0972014842498505	0.705379688126336	0.922756484933722
Merged-chr7-75702893-5	chr7	75702551	75703551	+	761.016663	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 16 of 36)	MIRb|SINE|MIR	-145287.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.4901553969577	6.41853463051111	6.43072168202153	6.47694080788353	6.59268835062007	6.5954850193803	0.175144004105614	0.501893255863698	0.836083485833682
Merged-chr12-82260367-4	chr12	82259867	82260867	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-50982.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.29613606451279	5.6291769478718	5.5458237299457	4.93106521429198	5.49669570930627	5.49770419798113	-0.310500248356107	0.416286584258719	0.787183450387086
Merged-chr5-123699393-3	chr5	123698881	123699881	+	857.888916	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_027494, exon 14 of 14)	3' UTR (NM_027494, exon 14 of 14)	-15020.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	2.79542127215207	2.63004320690361	2.76130566255902	2.63401712281422	2.52420746614453	2.64839856323974	-0.727496661271535	0.336560043245405	1
Merged-chr11-107028083-4	chr11	107027619	107028619	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163473)	promoter-TSS (NM_001163473)	-104.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	6.06196482857511	5.81758554361883	5.30857787131816	5.82403237855572	5.39227444957924	5.07252361431066	-0.555016985024215	0.178869193589596	0.560177193729651
Merged-chr10-77259206-4	chr10	77258708	77259708	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_026944)	promoter-TSS (NR_026944)	15.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	7.66520429234753	7.56098246236085	7.60704845328046	7.5915557931298	7.70185793166763	7.73550268132258	0.0943409151679475	0.666369477411896	0.908149841255908
Merged-chr5-116024535-4	chr5	116024079	116025079	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_031869)	promoter-TSS (NM_031869)	-151.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	6.45508444047103	6.3489581032359	6.65669931968256	6.32184771545473	6.276420139634	6.37454946394426	-0.266810068063555	0.331154580560885	0.722538030714027
Merged-chr2-73496169-4	chr2	73495666	73496666	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-10413.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.62179261504318	7.46159122286207	7.2914586044699	7.31718190021664	7.61130143756474	7.34878806168649	-0.0468807662076518	0.848918736133566	0.964466784578983
Merged-chr10-96751092-1	chr10	96750592	96751592	+	748.0	f0_balb.idr	Intergenic	Intergenic	134091.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	3.09709054256401	3.15721330111997	3.04972731668776	2.75978811520997	2.70581365799751	2.88103002310941	-1.66634993397721	0.0209810162082924	0.166662376769412
Merged-chr6-91712292-2	chr6	91711792	91712792	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28225.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	6.94171415943314	7.08382104085247	7.17734502437141	6.96396488349426	6.98230602026002	7.35616229282508	0.057300159287888	0.825208986145768	0.958767231536338
Merged-chr9-7272424-4	chr9	7271927	7272927	+	982.1875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_008607)	promoter-TSS (NM_008607)	-87.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	4.31139628862982	4.29099860581644	4.42346465305665	3.78794062553734	3.82345986940255	3.9526391358414	-1.44060621971467	0.00346686557580619	0.046890596689155
Merged-chr7-19333880-2	chr7	19333380	19334380	+	805.833313	f1_balb.idr|f1_c57bl6.idr	Intergenic	B1_Mur1|SINE|Alu	-11191.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	3.51194676178178	3.13026494766085	3.35289190214679	3.58087143187424	3.57798443346929	3.6433407641023	0.957843446149762	0.116219464278537	0.455137876890266
Merged-chr2-140778358-4	chr2	140777870	140778870	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-106894.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	4.76576151543704	4.75387555340219	4.53929511648089	4.50880589104799	4.32122555823422	4.5644046544433	-0.580974322959427	0.172352563328386	0.550874360596261
Merged-chr2-129403098-3	chr2	129402590	129403590	+	816.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-31951.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	3.44821281475625	3.68396928672146	3.80055335277112	3.24623828880207	3.18350747457077	3.35558505698514	-1.51361618516619	0.0142037884076211	0.128060334361397
Merged-chr11-96975018-4	chr11	96974515	96975515	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2673.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	6.2515968847831	6.62588883245728	6.4779011407152	6.39823228716094	6.85137001290117	6.82533584098503	0.393730444446966	0.181463417896362	0.563787133106409
Merged-chr14-61438552-3	chr14	61438051	61439051	+	690.222229	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008466, intron 1 of 16)	intron (NM_008466, intron 1 of 16)	1396.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	4.67459376355764	4.8372885083018	4.54321983380558	5.02261623923113	5.06547144201481	5.04335277466903	0.763096606769585	0.0520956460299109	0.291629071236331
Merged-chr8-80319200-3	chr8	80318667	80319667	+	854.805542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-174878.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	3.68537186125167	3.71039492294037	3.73407261110786	3.54488706516987	3.64455730834759	3.75283914951511	-0.211986185961001	0.695664245146074	0.919291538728398
Merged-chr7-141024929-4	chr7	141024435	141025435	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8043.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	6.54063641621271	6.37602486366054	6.79134146768789	6.86275180959766	7.02799114296041	6.87875548737969	0.563158898947969	0.0352053118671419	0.230223482382988
Merged-chr1-131960564-2	chr1	131960064	131961064	+	707.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2351.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	2.54114767822121	2.53924627342618	2.67440685125226	2.65353741483288	2.52382000114779	2.86616983456055	0.552553973956709	0.473573945415122	1
Merged-chr6-87552585-4	chr6	87552096	87553096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19337.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.39478718807502	5.16825417841057	4.84415790162981	5.31118063278394	5.47118031029976	5.10780060952238	0.294923554045249	0.448304896544912	0.807187517914313
Merged-chr11-70792656-4	chr11	70792175	70793175	+	837.349976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001045526, intron 4 of 4)	MLT1A1|LTR|ERVL-MaLR	19886.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	6.12815218942715	5.69087017437613	5.88921989062613	5.86974623245106	6.2285599051988	6.15339315767569	0.308964582748304	0.336019304607464	0.726090328603253
Merged-chr8-19162114-3	chr8	19161629	19162629	+	737.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	4242.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	5.22936722279994	5.72006773888864	5.37681452751909	6.15696442194661	6.25836514976761	5.53954344640306	1.02090980012882	0.00669245466036183	0.0756302821376324
Merged-chr11-94707835-4	chr11	94707346	94708346	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-3347.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	4.77419941921791	4.51252549018624	4.48946486879054	4.61239792932315	4.48052693362216	4.51375076395546	-0.167187101013107	0.695078714591624	0.919230570201314
Merged-chr1-144309481-3	chr1	144308981	144309981	+	872.611084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	PB1|SINE|Alu	-60377.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	3.59922333281559	3.51080815603802	3.53768131786228	3.73189908126399	3.63132707989131	3.76560285436975	0.54637314922473	0.319994267504714	0.713841334732408
Merged-chr19-16773754-2	chr19	16773254	16774254	+	720.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_173028, intron 1 of 71)	intron (NM_173028, intron 1 of 71)	7179.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	4.76164500285171	4.72517081481678	4.76017561006204	5.32011552406931	5.34987365185285	5.56739602776835	1.39746617875879	0.00015770589294601	0.00413694575669974
Merged-chr4-86671058-3	chr4	86670521	86671521	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	-962.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	6.93499992149413	7.23427682642183	7.10818535249304	6.66986326133918	6.88068174542394	6.73206600513047	-0.510126841880066	0.0470765278887761	0.274694511400371
Merged-chr8-41024836-3	chr8	41024338	41025338	+	833.472229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_015457)	TTS (NR_015457)	7370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	5.29439441714233	5.45536952538744	5.52108364426839	6.32819864646932	6.44357686113586	6.20285001219693	1.62092202560335	1.09610403439049e-07	7.76209570157992e-06
Merged-chr19-55255427-2	chr19	55254927	55255927	+	689.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	2058.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	4.79486080819535	4.78675012193209	4.74864743191305	5.19044185045017	5.4081430696979	4.97366943212539	0.938545023130788	0.0147832465601216	0.131321061148137
Merged-chr17-34932491-2	chr17	34931991	34932991	+	599.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010893, intron 2 of 5)	intron (NM_010893, intron 2 of 5)	1238.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	5.84158748909344	5.73807628226498	5.89490178345969	5.53365397771977	5.72267502338251	6.08610609080698	-0.0581141206344532	0.860164228707152	0.967441103100897
Merged-chr17-13867631-4	chr17	13867117	13868117	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-80756.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	7.18584231642768	7.2916355804584	6.88595508238292	6.62915023959443	6.65352544898874	6.64335052108844	-0.769918997398887	0.00291479065681523	0.0412332371595175
Merged-chr15-37961132-4	chr15	37960626	37961626	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_199476)	promoter-TSS (NM_199476)	-71.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	7.28547290334916	7.42509711746279	7.12048484584885	7.33290610324104	7.35655046128423	7.28830273140562	0.0557147959267948	0.813825369738637	0.955951026586845
Merged-chr16-20829615-2	chr16	20829115	20830115	+	886.900024	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-95104.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	4.36435192931968	4.53300454075275	4.79107184926153	5.06089916595659	5.26246563840948	5.10421484672542	1.32561123168486	0.0010228056646364	0.0183456809103396
Merged-chr6-91617397-4	chr6	91616880	91617880	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-66687.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.14789310677064	4.96608344012552	5.51676427150712	5.13273343799108	5.00291484708707	5.14173360051378	-0.263617102837878	0.493311170790785	0.831208279358962
Merged-chr14-87415940-4	chr14	87415441	87416441	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-642.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	7.90619431537687	8.33560143044574	8.11317862677492	7.77233935220643	7.94186772824434	7.89858744622925	-0.367164676835626	0.116139166679003	0.455079356182438
Merged-chr8-83067097-4	chr8	83066598	83067598	+	784.729187	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-98254.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.73150640820556	4.93164773213217	4.85107414215588	4.95740413041928	4.60448096173051	4.87952184532115	-0.0594672287864555	0.882891893397152	0.973325083825709
Merged-chr3-101836290-4	chr3	101835808	101836808	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-85.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	6.11909257188217	5.88440639126039	5.90378216596717	6.0667840910209	5.99152068618385	5.86559711494167	0.00791087676844555	0.978934976273975	0.995160277495735
Merged-chr2-77944608-2	chr2	77944108	77945108	+	999.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030560, intron 1 of 20)	RLTR28|LTR|ERVL	1748.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	2.54885019544913	2.76072975200957	2.65564459528987	2.65061162764962	2.64944222138341	2.85054873789483	0.306031129932763	0.685116807501707	1
Merged-chr19-7041094-2	chr19	7040594	7041594	+	650.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1068.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	5.85412467351037	5.99439516465203	6.08244420585209	5.68573375679396	5.82901726542995	5.84867342979774	-0.3307007326598	0.275419781387276	0.672924864037833
Merged-chr3-20028350-3	chr3	20027885	20028885	+	784.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080634, intron 4 of 16)	ID_B1|SINE|B4	6925.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.08174880074739	6.50278144798702	6.71618188482157	6.38906665922314	6.64641820454396	6.75992058583396	0.245612517161759	0.426663495895332	0.793840707522572
Merged-chr8-114438951-2	chr8	114438451	114439451	+	627.5	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-701.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	3.86824126156274	3.70368288541033	3.72565557909948	3.62494164455353	3.59819810348406	3.89436781623692	-0.218216981410421	0.688863151703655	0.917235946766438
Merged-chr18-55040743-3	chr18	55040304	55041304	+	597.916687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-48213.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.0975038927102	3.27649798313629	3.08841653726546	3.09597554623051	3.01445402574346	3.21878940770385	-0.23359613559237	0.720356396386421	0.928142072321482
Merged-chr4-136899860-1	chr4	136899360	136900360	+	1000.0	f1_balb.idr	Intergenic	RSINE1|SINE|B4	-1016.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	3.79472337163873	3.48894037607185	3.79905528540595	3.72209181566038	3.7795289496121	4.00971151372187	0.452961073586892	0.411094708177894	0.783840094880781
Merged-chr17-31073507-4	chr17	31073002	31074002	+	919.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	15808.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.86904973470825	7.47284273494519	7.50848589202155	7.56739812130391	7.69839470822376	7.17329274473192	-0.181760706580287	0.498963636220415	0.834166852012946
Merged-chr8-10923775-3	chr8	10923261	10924261	+	795.25	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NR_030715)	TTS (NR_030715)	4696.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	4.48747495242709	3.73464541493187	4.12725717629186	4.10232652150551	3.6817110540942	4.00463849133156	-0.627076325643927	0.272836496291732	0.669957480476964
Merged-chr10-63300105-2	chr10	63299605	63300605	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359484, intron 14 of 22)	intron (NM_001359484, intron 14 of 22)	38930.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	4.00298853290117	3.58584237127154	4.0249767089322	4.12445351702124	4.14110033987578	4.1855260737555	0.794303897575153	0.128767238336797	0.479799601167289
Merged-chr2-167661719-4	chr2	167661196	167662196	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-152.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	7.84717912577518	7.75364842656426	7.50444857265168	7.62015153858269	7.62704488575432	7.40039220280093	-0.228186297245654	0.33505068841182	0.725339338581532
Merged-chr19-9977962-4	chr19	9977461	9978461	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2639.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	7.49801063307332	7.48776833260271	6.74055246620724	7.26529320206015	7.43342735372962	7.02031910858536	-0.063007647484503	0.836745260189604	0.962001762335242
Merged-chr16-91487061-3	chr16	91486575	91487575	+	681.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010508, intron 1 of 10)	ORR1A1|LTR|ERVL-MaLR	1860.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	3.59775311964604	3.50717561844937	3.84176015783413	3.69805587637053	3.40819102152478	3.71598786887832	-0.141027755370828	0.806946312255423	0.954399610026228
Merged-chr8-88696881-4	chr8	88696359	88697359	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_173369)	promoter-TSS (NM_173369)	-169.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	7.68725599115701	7.83535301620505	7.47991630402842	7.75226601270609	7.81098416028944	7.6652642972067	0.0926522634516493	0.688152192273048	0.917193226920892
Merged-chr10-87722505-4	chr10	87722001	87723001	+	922.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-135764.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.58271476644055	3.22426947560479	3.46262977882374	3.57496920134429	3.43323879330669	3.47870086177502	0.239628921429471	0.689819515625662	0.917495512399022
Merged-chr2-4457895-4	chr2	4457392	4458392	+	986.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56916.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.24631085476086	3.96950630470249	4.21500451739737	5.34687391805929	5.33614757424934	4.53993400512206	2.37993186809715	9.70707040321878e-07	5.28949518081878e-05
Merged-chr11-106815600-4	chr11	106815082	106816082	+	975.5416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_177088, exon 15 of 20)	exon (NM_177088, exon 15 of 20)	26330.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	4.3328009918912	3.96740436890441	4.17628695371484	4.17117323396269	4.22521675610248	4.49906277739551	0.357511249105884	0.460734075501531	0.814715903367997
Merged-chr6-38918928-4	chr6	38918419	38919419	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_011539)	promoter-TSS (NM_011539)	-67.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	7.87235554015388	7.76081529897786	7.15417792993017	7.34015484343453	7.60720376293845	7.08916761686754	-0.393997904336846	0.184299056549765	0.567896082682157
Merged-chr5-64959652-4	chr5	64959147	64960147	+	814.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	449.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	8.48368904844553	8.89513911668095	8.12473233937974	8.50057046455116	9.05795527178993	8.53317948743676	0.250765346033836	0.38659225133833	0.767131316757601
Merged-chr13-92844798-4	chr13	92844259	92845259	+	994.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001162945)	promoter-TSS (NM_001162945)	-28.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	4.98441726597809	4.91520792723899	5.21698474420691	5.17522725091296	5.1774589579367	5.18513546360822	0.303780820599941	0.404551831102998	0.779735210266574
Merged-chr1-37479272-4	chr1	37478770	37479770	+	935.94165	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_173870, intron 5 of 15)	L1M4|LINE|L1	9335.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	4.71292368684506	4.41426152425236	4.39440513120139	4.56498203154408	4.45168893375477	4.37135982151202	-0.134397036936462	0.760770693472803	0.941002855722266
Merged-chr17-27051767-4	chr17	27051262	27052262	+	850.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5542.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	5.29927776902326	5.68593586363683	5.38487791086098	4.90925147623036	4.72626725107266	4.86850380370413	-1.33888684864685	0.000380006117114353	0.00845442486439869
Merged-chr4-53122455-3	chr4	53121946	53122946	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37449.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.81019846443113	6.67641285727011	6.72326219084466	6.80741868632569	6.76496007780129	6.81255896603287	0.0862859301275424	0.728355000948643	0.930478966998914
Merged-chr1-180762867-4	chr1	180762353	180763353	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MTD|LTR|ERVL-MaLR	36810.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	5.50321732347564	5.23829421479407	5.35756228134959	5.44349920621424	5.01084711903684	5.64199123192302	0.0143964004048457	0.969809752222977	0.993217347877084
Merged-chr5-125392370-3	chr5	125391874	125392874	+	910.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2357.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	9.32615223927943	9.92355594485449	9.03653355953282	9.36604770548157	10.0383806334099	9.14176260975083	0.122707896183569	0.807264653649526	0.95453117889869
Merged-chr17-50470042-4	chr17	50469546	50470546	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-39501.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	7.68406270634147	8.08279053497579	7.57762171420129	7.81468988428774	8.32608202533394	7.77560586268415	0.283421365753973	0.30887588713537	0.70476767553933
Merged-chr11-68939816-4	chr11	68939303	68940303	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-12722.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	5.74985167753779	6.04602216304496	5.6745806484059	6.12845983322305	5.94297361132836	5.35816030071719	0.0375174217565048	0.91830916036819	0.981751083962899
Merged-chr11-62458457-4	chr11	62457935	62458935	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001039536)	promoter-TSS (NM_001039536)	-25.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	7.94369381589003	8.32716020860798	7.88718419455584	8.06349813080161	8.30072087621603	7.83421667076413	0.0196186557383406	0.93874721697882	0.986515091506254
Merged-chr11-120932851-4	chr11	120932356	120933356	+	944.2708130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027745)	promoter-TSS (NM_027745)	16.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	4.55549707075382	4.66885120672481	4.38911761891949	4.53353133164855	4.30245133317426	4.41234632816285	-0.338255600574711	0.440357800705862	0.801759315323114
Merged-chr17-47658979-3	chr17	47658479	47659479	+	918.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198421, intron 2 of 6)	intron (NM_198421, intron 2 of 6)	28289.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	4.43683976841893	4.50810705756151	4.38427823963306	4.13288786453054	3.9074608212628	4.27655349762123	-0.944537011764378	0.0450103998250531	0.267592551346314
Merged-chr5-92042796-4	chr5	92042307	92043307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001276315)	promoter-TSS (NM_001276315)	-111.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	6.25114243824267	6.18132756197809	5.97733232902707	5.75426009363298	5.62906406407768	5.49594013583462	-0.906711478557325	0.0033936384627194	0.0461100374274912
Merged-chr5-137511385-2	chr5	137510885	137511885	+	862.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-7495.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	3.43560386556575	3.48095898861295	3.21536694117098	3.29955335036251	3.02133417259829	3.28836391985686	-0.748921576675214	0.245316245089178	0.642393755173178
Merged-chr14-103827087-2	chr14	103826587	103827587	+	658.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	16614.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.24054824914833	4.27477599851516	4.40635387401322	3.92969876412781	4.283810408682	4.3477708866004	-0.286382965549426	0.550532315466318	0.860709619458349
Merged-chr3-109254743-2	chr3	109254243	109255243	+	850.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-85940.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	7.07893940476701	7.22966689496326	6.78339212616438	7.21480013608969	7.44403089909809	7.03683039983095	0.297055985087193	0.270639281232536	0.667629387731657
Merged-chr10-20769678-4	chr10	20769174	20770174	+	898.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-44596.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	7.20004660040541	7.25660653019588	6.60195393866845	7.08921260176677	7.37323611460854	6.60553857203159	0.0166937332788225	0.959379895163319	0.990177156000365
Merged-chr1-36231085-4	chr1	36230576	36231576	+	920.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198899, intron 2 of 40)	intron (NM_198899, intron 2 of 40)	13226.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	4.05437715663823	4.15658469745301	3.95924736969286	4.12670838097652	4.33860450533436	4.63463325778349	0.848796328537019	0.0844106605929644	0.384541048268239
Merged-chr5-147894820-4	chr5	147894287	147895287	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_027872)	promoter-TSS (NM_027872)	28.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	7.23335955210943	7.55656401858851	7.38171090655798	7.45186635019253	7.82665644891708	7.60027918288255	0.355335588611136	0.153600089582383	0.522537971870107
Merged-chr6-66998397-2	chr6	66997897	66998897	+	584.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-38202.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	2.7166266989828	2.57311303219852	2.89213904758896	2.64325019920454	2.39681850505284	2.8492629033458	-0.495517822866298	0.540477103305257	0.85632302227606
Merged-chr13-112753535-4	chr13	112753039	112754039	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-47238.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	4.44220573255832	4.31497523875496	4.62961359475281	4.28647884196121	4.29862249051112	4.50045341044842	-0.261708698334507	0.558693597831411	0.864744077984264
Merged-chr6-72601934-4	chr6	72601426	72602426	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_026159, intron 3 of 10)	intron (NM_026159, intron 3 of 10)	3298.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	3.39198324211455	3.12638924611925	3.01886736346542	3.06075341824467	3.32857407773735	3.27322840480938	0.1390809144389	0.835650218310758	0.961787999211487
Merged-chr10-19938522-1	chr10	19938022	19939022	+	706.0	f0_balb.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	3996.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.44931014937545	5.43163537753151	5.49460168827745	4.82198753879589	4.85458325493289	5.44739901919371	-0.809834321969665	0.0381007488457055	0.241593428838255
Merged-chr18-58531461-4	chr18	58530972	58531972	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-24768.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	6.14128766424263	6.27247430201427	6.35517205902396	6.0360165847249	6.46161661912337	6.39624205988533	0.0985586720849369	0.738419332366278	0.934032187674406
Merged-chr9-21011177-4	chr9	21010666	21011666	+	956.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B2_Mm1t|SINE|B2	-4774.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	3.18209955819126	3.31252799109639	3.23804269192806	3.22487489255795	3.25972669690566	3.25215071571014	-0.00147488697147652	0.998093327370417	0.999582947184026
Merged-chr4-134762598-4	chr4	134762096	134763096	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	5408.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	7.83396478244428	7.71601343954354	7.63307904812943	7.60172014230566	8.00831999055999	7.37735315890138	-0.0445257082182946	0.865597719322183	0.968641478520565
Merged-chr5-52741590-4	chr5	52741083	52742083	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025951)	promoter-TSS (NM_025951)	9.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	6.03225943141208	6.24367652660029	5.81473362336078	6.03120346904888	5.64169931988854	5.56556620505653	-0.500606258607256	0.1349116021702	0.490956684599956
Merged-chr18-58564614-3	chr18	58564102	58565102	+	779.888855	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	8362.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.83620424859494	4.9248804544854	5.07824513681896	4.42416223675831	4.37697972138854	4.91284427783192	-0.85037117081349	0.0500854641472086	0.284977523301486
Merged-chr11-70459837-4	chr11	70459342	70460342	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	non-coding (NR_151497, exon 1 of 6)	non-coding (NR_151497, exon 1 of 6)	142.0	NR_151499	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	8.09821512990784	7.95467149010729	7.64748930002569	7.78543026870074	8.03423951649744	7.76826237770667	-0.0672245249510205	0.782108968383554	0.94641986913206
Merged-chr11-120853731-4	chr11	120853252	120854252	+	809.875	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027745, intron 18 of 18)	intron (NM_027745, intron 18 of 18)	-29205.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	4.22108086926036	3.82993385338319	3.75957405458416	3.94154709593606	3.69926083693923	4.12764156134692	-0.0981612172469427	0.858946014474506	0.967094434223166
Merged-chr6-57773109-2	chr6	57772609	57773609	+	644.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	52016.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	4.41198471108698	4.71362126860493	4.77195285448175	4.28512171809257	4.48746967676869	4.80090735363743	-0.252759273131683	0.576760713347959	0.871715684727395
Merged-chr17-31003436-4	chr17	31002945	31003945	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	48762.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	6.12914409068424	5.92555885191893	5.9690293558728	6.4559283523849	6.70619761873993	6.14844025903489	0.76237092056779	0.0125909201413297	0.118233301333908
Merged-chr2-5036607-4	chr2	5036108	5037108	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-23817.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	7.74377164067956	7.76946612814109	7.41405751939268	8.0927314002377	8.49323156249917	7.50483998347794	0.63582265568458	0.0375318419627462	0.239471628405504
Merged-chr10-87840199-3	chr10	87839708	87840708	+	851.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18057.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.08471823401166	4.88485059184593	5.43773928477292	5.19535854196908	5.14239240209882	5.13952706381614	0.0362927924631126	0.924458738290312	0.982960139621551
Merged-chr2-52958634-4	chr2	52958124	52959124	+	836.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	100756.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.59379495858537	5.39919670786513	5.25880175966176	5.16341266822308	5.50176521419515	4.87355847695723	-0.406115328450194	0.301850267382206	0.698510917160457
Merged-chr10-51452324-2	chr10	51451820	51452820	+	977.666626	f1_balb.idr|f1_c57bl6.idr	Intergenic	L1VL1|LINE|L1	-28292.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	7.03209350318328	7.53550754219555	7.30894999999639	7.09401099511195	7.48776562137743	7.14010104614095	-0.0748901602301795	0.785784307589085	0.948164689606319
Merged-chr6-87672283-4	chr6	87671793	87672793	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-125.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	6.16425285315755	6.02559725973367	6.05598277345315	5.8548765622132	5.84370658603114	5.8061628214888	-0.43329168965107	0.138646556790715	0.497556158669063
Merged-chr6-82769348-2	chr6	82768848	82769848	+	735.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	B1F|SINE|Alu	5106.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	3.7057010993675	3.9354705486393	3.96096536994441	4.32714693076222	4.21793440373206	4.22076099267944	1.13470459552333	0.0217759310621415	0.170877899904468
Merged-chr3-144679759-1	chr3	144679259	144680259	+	666.0	f0_balb.idr	Intergenic	Intergenic	40576.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.11614001078504	6.07675472325465	5.6971457914958	4.87791180361496	4.83278361406647	5.02881229337764	-2.12126763802472	2.21910046030221e-09	2.305204882657e-07
Merged-chr6-82772841-3	chr6	82772343	82773343	+	899.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	1611.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	7.14519624273263	7.59181234026031	7.2715117764974	7.72533845064525	7.66755409397586	7.51465461252098	0.418622246805424	0.0950549983693943	0.411104001609782
Merged-chr7-30760916-4	chr7	30760411	30761411	+	902.916626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER10A|LTR|ERVL	-2845.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	2.5359765696708	2.65717021996447	2.6674570285363	2.60048359119527	2.49002288095687	2.8005885408414	0.0566006851911172	0.941476881310646	1
Merged-chr2-91949506-2	chr2	91948968	91949968	+	821.75	f1_balb.idr|f1_c57bl6.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	880.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.17440326874012	6.2545325755125	6.16694099521056	5.88512511233605	6.00750523390216	5.90996133910906	-0.448697011791744	0.117231241981062	0.457311976431135
Merged-chr6-26428519-1	chr6	26428019	26429019	+	563.0	f0_balb.idr	Intergenic	L1_Mur3|LINE|L1	497093.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	2.89261948335227	3.0640973721935	2.9947397146838	2.71408249063233	3.05841056296159	2.94765007089096	-0.315648320653155	0.660738295139115	0.906118039751718
Merged-chr12-84004739-4	chr12	84004215	84005215	+	936.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1M2|LINE|L1	-4787.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	6.65025848966021	6.94045555466215	6.48561892987034	6.17989760556732	6.28656756982789	5.96311244968586	-0.898420783639981	0.00244989419320899	0.0361501677653013
Merged-chr17-17374560-4	chr17	17374059	17375059	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_025934, exon 1 of 10)	5' UTR (NM_025934, exon 1 of 10)	227.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	7.23266487562514	8.072372992346	7.87956760548524	7.60737163196755	8.14418357838805	7.34695082608074	-0.0376748438402103	0.909237592724033	0.979384717565381
Merged-chr9-50949899-2	chr9	50949399	50950399	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	59174.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	4.32337278976145	4.4461888384734	4.56019213280402	4.45952168607014	4.557254330547	4.91503552791449	0.509061826213575	0.249451898537224	0.646365357085824
Merged-chr13-60356352-4	chr13	60355882	60356882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	150911.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	5.65341906662293	5.71178588648334	5.92210147951187	5.6709442371592	5.82359760188655	6.09037606239219	0.189585012255207	0.555909375688505	0.863466091383778
Merged-chr13-51843495-2	chr13	51842995	51843995	+	1000.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RLTR25A|LTR|ERVK	-3180.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.02928401680536	4.06178057819784	4.03172416082581	3.9791661687097	4.33043310474119	4.10086525019221	0.321482414096481	0.512004959858997	0.841654532746362
Merged-chr2-35108316-4	chr2	35107812	35108812	+	916.741699	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1180.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	4.71046752566422	4.59784791149726	4.92540753042246	4.62173176646788	4.89165809919713	4.56848376846546	-0.0677112459007351	0.872373712874097	0.970261003150518
Merged-chr11-107242812-3	chr11	107242311	107243311	+	1000.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-53430.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	4.2239120291353	4.0981909393771	4.38221100312908	4.24540085560649	3.70944758573323	4.23754677976624	-0.434258143865666	0.407954958998803	0.781926100186554
Merged-chr7-129526218-3	chr7	129525726	129526726	+	928.055542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-65637.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	3.26141741254345	3.57037434235216	3.55624505825018	3.69607758065427	3.35630188077124	3.22269604805344	-0.0955256250499971	0.880502407622783	0.972540920690587
Merged-chr15-50890078-4	chr15	50889594	50890594	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-53.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	6.74061587841165	6.65644249072898	6.23855270198999	6.54072681818257	6.40142613929528	6.23393172622724	-0.277297415482873	0.346248544079482	0.734515828466387
Merged-chr18-75307215-6	chr18	75306894	75307894	+	936.6666869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10065.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.11362087901675	4.09481718770804	4.11862283860589	4.1368164343555	3.95911021105457	4.04400159408503	-0.182320773171962	0.703839649238441	0.92227492970129
Merged-chr4-46601301-7	chr4	46600652	46601652	+	930.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	777.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	3.65596081877102	3.46301445245855	3.91308015493319	3.40530542750738	3.17821888740948	3.3201052618256	-1.44449611788684	0.0202680025634193	0.162911510558056
Merged-chr11-22872037-4	chr11	22871529	22872529	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-11693.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.49563351047792	6.52469394284978	6.33593381146247	6.3663037403103	6.50622527531761	6.50792358030966	0.00103082630585737	0.996924227376645	0.999278069574952
Merged-chr17-13540492-2	chr17	13539992	13540992	+	603.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_045436, intron 2 of 4)	intron (NR_045436, intron 2 of 4)	13602.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	2.34832692362498	2.16273597020138	2.44664011384914	2.70927780131943	2.40055083353641	2.58658862851431	1.59180301657575	0.0695689751007262	1
Merged-chr10-60933648-4	chr10	60933157	60934157	+	909.0166630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4475.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	6.14043222616067	6.26622275536411	6.14376263985632	6.43191570970122	6.54393388946655	6.26840697387127	0.397968815882297	0.153110959435138	0.521869962103404
Merged-chr13-45311639-3	chr13	45311073	45312073	+	769.333313	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-78169.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.10948890255856	3.19730124819582	2.94353108647627	3.2978507807836	3.37564021472632	3.20666838529236	0.860489378441915	0.191955076024682	0.578912575783319
Merged-chr1-180698270-3	chr1	180697759	180698759	+	955.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3A|SINE|B2	-1225.0	NM_013729	27217.0	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	1.8513565925233	1.74907375472325	1.97588227232044	1.76294703079468	1.54378580641458	1.70941242297543	-1.88198787058063	0.101224751445194	1
Merged-chr17-83212646-4	chr17	83212138	83213138	+	996.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2645.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.05407935707373	6.29019684590311	6.5543995002883	6.37823755780964	6.09090631433749	6.4628152151058	0.00887590252171943	0.976964091740733	0.994769134402338
Merged-chr14-61696567-4	chr14	61696082	61697082	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-14209.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	6.70884977136965	6.70426053149449	6.85494147599464	6.70161181734615	6.9243848561417	6.68392239068367	0.0465973306825225	0.856470779693552	0.966529239953755
Merged-chr19-32947315-3	chr19	32946816	32947816	+	734.833313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	189739.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	3.73428857707007	3.99083676143605	3.87107472142122	3.99476180627199	4.07604229735999	4.38888579020333	0.841550223875004	0.10287454560867	0.427699869641562
Merged-chr15-64100655-4	chr15	64100153	64101153	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40205.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	6.82520035480383	6.66164470660056	6.7905707056659	6.83085497273346	6.59446529327511	6.53748983711545	-0.151419112276668	0.563825884749276	0.865992481769395
Merged-chr10-80824075-4	chr10	80823541	80824541	+	925.4375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2615.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	6.61350894261816	6.93578352567822	7.07061250741517	6.99355646910243	7.42910642899653	7.09039608257324	0.471729252934497	0.0911289414867858	0.401708887647408
Merged-chr19-32762125-3	chr19	32761597	32762597	+	759.666687	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008960, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	4520.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.90753903598283	7.37824721609794	6.54943537307574	7.35991308860527	7.74389662257684	7.16133421139699	0.667956900259464	0.0387469821626303	0.244077383635537
Merged-chr16-30465017-4	chr16	30464544	30465544	+	956.8958130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16_Mm|LTR|ERVK	-76514.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	4.87704611556282	4.74068044918763	4.95006366794128	5.5509679721589	5.88494402447914	5.16592375904996	1.47891320134738	0.000155088995795535	0.00408633475685714
Merged-chr15-53342321-2	chr15	53341821	53342821	+	711.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	3862.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.41028087589482	3.14227855058631	3.22012619375856	3.24812340234721	3.08009483785175	3.23427394017521	-0.327505588521512	0.608187893647223	0.884921814563233
Merged-chr3-51341846-2	chr3	51341356	51342356	+	901.666626	f0_balb.idr|f0_c57.idr	Intergenic	Intergenic	-1212.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	6.80819850254804	6.46789430597283	6.5028143346856	6.5591065241347	6.57878379906486	6.35268787531704	-0.15832783294776	0.569430693733139	0.8688875602138
Merged-chr1-85285985-1	chr1	85285485	85286485	+	805.0	f1_balb.idr	Intergenic	B3|SINE|B2	-15419.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	2.40002403063701	2.46193210386133	2.6183057842154	2.1412993741181	2.05945523680024	2.8074385989389	-0.400881933533075	0.853489670606472	1
Merged-chr14-66241930-4	chr14	66241428	66242428	+	782.599976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28104.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	5.38895630018525	5.34537433332472	5.62282916869126	5.77402829842612	5.82444699488071	5.65816738358352	0.584236105814832	0.0709722848263325	0.349456291841498
Merged-chr17-27896343-2	chr17	27895843	27896843	+	599.0	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	12899.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	2.7509865628073	2.59030639093131	2.7612606456964	3.53728361721447	3.37134374929041	3.45283835586986	4.52442550444995	6.2536672001953e-06	0.000267948064054506
Merged-chr4-132491949-4	chr4	132491443	132492443	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_144907)	TTS (NM_144907)	18513.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	6.73826969079645	6.89667823824682	7.23535199885562	6.88717177745693	7.1282409409183	6.90353526617946	0.0288133665667444	0.915758171711747	0.981200822249461
Merged-chr2-37443254-4	chr2	37442686	37443686	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146121)	promoter-TSS (NM_146121)	-65.0	NM_199025	320633.0	Mm.383299	NM_199025	ENSMUSG00000050714	Zbtb26	A630026F21Rik	zinc finger and BTB domain containing 26	protein-coding	7.40435263856107	7.65299831048296	7.61711603563065	7.45970035769689	7.5241123572275	7.06939361560595	-0.271390484009095	0.285292711423427	0.682831466478368
Merged-chr2-125671411-2	chr2	125670911	125671911	+	613.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_199022, intron 4 of 11)	intron (NM_199022, intron 4 of 11)	-1689.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	3.11667251405397	3.26432508243718	3.29457289092797	3.18174097444773	3.04286858564369	3.56607830703599	0.202040979106456	0.760900415711982	0.941046607439565
Merged-chr4-46374605-3	chr4	46374083	46375083	+	712.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	14840.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	3.92284163703302	3.84492483154795	3.68583451204	3.81958217569217	3.54336539743361	3.70283532538841	-0.45302411873106	0.40632265259324	0.780646569949505
Merged-chr9-70014041-2	chr9	70013541	70014541	+	719.233337	f1_balb.idr|f1_c57bl6.idr	intron (NM_001282083, intron 1 of 4)	intron (NM_001282083, intron 1 of 4)	1493.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	5.23438775337494	5.11076157242007	5.0964667144753	5.1625582993451	4.85765348720752	5.28915683488079	-0.101035292867597	0.788739907144821	0.948978718206227
Merged-chr19-38043897-3	chr19	38043389	38044389	+	767.444458	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	-312.0	NM_001302140	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	4.96614452035192	5.33262971478319	5.52038571177191	5.01868009940768	5.34598150504094	5.32893935726103	-0.0880734892331307	0.819215645979185	0.957209935971094
Merged-chr1-93654547-2	chr1	93654047	93655047	+	591.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18820.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	3.12948899952394	3.04513447755732	3.22134268328175	2.91711146410014	2.79118125278494	3.0082682016007	-1.08567182027918	0.11470432431117	0.452186398382538
Merged-chr17-77969404-4	chr17	77968901	77969901	+	977.75	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER16|LTR|ERVK	-230847.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.20252736663946	3.51786645547726	3.68121618885221	3.05621960680359	3.37278649347306	3.05599308887596	-1.22824101696443	0.0810124090260496	0.376661675724458
Merged-chr4-122896869-2	chr4	122896369	122897369	+	949.3333130000001	f1_balb.idr|f1_c57bl6.idr	Intergenic	MTB|LTR|ERVL-MaLR	-10793.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	3.63792928658209	3.51986621983053	3.61667709269468	3.96183280223161	4.06284670952325	4.09011950682605	1.4585828886821	0.00590105508378103	0.0689434135651857
Merged-chr8-120816556-4	chr8	120816041	120817041	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER6A|LTR|ERVK	77902.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.28727760889475	5.88961395130509	5.67057196499937	5.50977732866734	5.64532920281927	5.2502130968712	-0.286600900966935	0.440284120754347	0.80173308886134
Merged-chr2-120563231-5	chr2	120562768	120563768	+	796.833313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	591.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	8.04205698816984	7.91826964829377	7.75601481595815	8.24195049521542	8.51517152739668	8.14179883337802	0.564140549354218	0.0151005842584746	0.13332600029228
Merged-chr9-88960197-4	chr9	88959691	88960691	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	3271.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	3.75295337825937	3.36694668828785	3.77618162645535	3.76046966884038	3.71511056141316	3.63880043263781	0.224298980548937	0.695629157462247	0.919291538728398
Merged-chr11-59849791-2	chr11	59849291	59850291	+	811.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_134029, intron 1 of 4)	MLTR11A|LTR|ERVK	1718.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	3.39844185141495	3.12683332635245	3.40959912921049	3.64847107047622	3.55796892957947	3.64224302007091	1.13419951950809	0.0593900245268158	0.315583700161395
Merged-chr19-11264902-2	chr19	11264402	11265402	+	726.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	1249.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	3.43666406841394	3.29892889494191	3.35905699284387	3.23505875032442	3.08047912822017	3.14080054783623	-0.895464707459956	0.154398885800314	0.523666674943519
Merged-chr18-80373086-4	chr18	80372587	80373587	+	942.0833130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-8833.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	2.87699339537442	2.65012456686641	2.92997813630822	2.86114921098601	2.57368172628943	2.49175288073064	-0.89590840020177	0.266532415352502	0.664166899200562
Merged-chr5-21030405-4	chr5	21029887	21030887	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	4860.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	6.33480475032195	6.40286122444495	6.2888445610819	6.5082409169428	6.6556292618621	6.44623050156793	0.324981298087129	0.224996972471748	0.619916879365712
Merged-chr5-147046484-3	chr5	147045988	147046988	+	989.7222289999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	30084.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	4.44565954134327	4.39617081572802	3.81980427615481	3.37959078122009	3.23503728528445	3.47965332426386	-3.31039287401796	5.21353681975913e-07	3.04382227529463e-05
Merged-chr5-72796477-4	chr5	72795986	72796986	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-43709.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	5.94343843414718	5.93252938831962	6.01865777900437	5.41857913960149	5.63669257497022	6.0362618664905	-0.450900269172728	0.176230422636749	0.556457992059754
Merged-chr6-97363362-3	chr6	97362876	97363876	+	754.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145148, intron 6 of 23)	L4_A_Mam|LINE|RTE-X	95910.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.56894832434405	3.39302238826234	3.77748123318231	3.76174142790512	3.61644437328614	3.89387991092052	0.597703611359003	0.293018966725742	0.690102227900588
Merged-chr7-81281444-2	chr7	81280944	81281944	+	693.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_008803, intron 2 of 21)	intron (NM_008803, intron 2 of 21)	63790.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	4.89966325041874	4.49483255122153	4.69929950736362	4.88831874802789	4.3489671052317	4.8771766143621	0.0261351147823244	0.954168930456463	0.989495550016789
Merged-chr1-39900771-4	chr1	39900271	39901271	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001252201)	promoter-TSS (NM_001252201)	-142.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.78300279626486	4.06447921053734	4.05890543299204	4.83919526999816	4.0804554593018	4.33397744745316	0.259750962889303	0.647912953640637	0.901578606359806
Merged-chr12-3740321-4	chr12	3739847	3740847	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-66633.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	7.80736037057271	8.0973814348565	7.48490740876874	8.08663029404894	8.29225588260638	7.70434638900478	0.325028943161289	0.244145632512861	0.641393925113824
Merged-chr17-83215770-7	chr17	83215306	83216306	+	947.9285890000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_134117, exon 1 of 7)	exon (NM_134117, exon 1 of 7)	523.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	4.923700827008	4.85680183783565	5.02342495567893	5.23004989848627	4.9451773982826	5.36911540451266	0.530853321207232	0.164900673355658	0.539606904800386
Merged-chr5-137757405-4	chr5	137756914	137757914	+	824.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	11445.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	3.10175602476919	2.9053974582861	3.2209336330108	2.96554144421624	3.05110350755407	2.8808663959627	-0.482229695815806	0.485950680560539	0.827641640456729
Merged-chr4-126063327-2	chr4	126062777	126063777	+	637.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_172701, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	4712.0	NM_172701	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	3.47752475110466	3.36109738080619	3.7092169935794	3.8921906230742	4.01186555954905	3.83099994693732	1.37883824078062	0.0137003228290684	0.125011126435039
Merged-chr13-67609691-4	chr13	67609206	67610206	+	995.3333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001163246)	promoter-TSS (NM_001163246)	1.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	5.23407912596688	5.71655863679195	5.13407582147201	6.80890064795263	6.97345051516018	6.29391143211283	2.26737958816862	1.50369278647246e-09	1.608216830036e-07
Merged-chr10-5194886-6	chr10	5194389	5195389	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001079686)	promoter-TSS (NM_001079686)	-182.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	6.23788794524206	6.55357806154258	6.18501866860514	6.1028988739442	6.50830372912576	6.18065294908097	-0.0934433084005427	0.760248314549806	0.940706387845526
Merged-chr6-34374033-4	chr6	34373533	34374533	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10214.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	4.09140702254062	3.94811288441298	4.20066143950505	3.88927739794476	3.87735069075145	4.04400419578433	-0.43636028090635	0.3808944290262	0.762863284905926
Merged-chr11-118494265-4	chr11	118493765	118494765	+	925.2083130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17433.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	6.34640184479429	6.28289136159471	6.60177970797963	6.33769166497181	6.40439073870706	6.32507209511831	-0.0800080384007067	0.772671175226226	0.943848608021176
Merged-chr3-9887385-1	chr3	9886885	9887885	+	569.0	f1_c57bl6.idr	Intergenic	MLTR11B|LTR|ERVK	-53706.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.26980845895189	4.05014699141848	4.3630998174172	4.44192327884389	4.43137192970269	4.66836657250186	0.744080176025363	0.102498977546736	0.426993390944211
Merged-chr8-94549163-2	chr8	94548678	94549678	+	648.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_153507, intron 2 of 15)	intron (NM_153507, intron 2 of 15)	16150.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	6.56181346406784	6.85348333406327	6.67481745682125	6.77544587566974	7.20455588591609	6.76609764363067	0.369906256921667	0.188048398672202	0.573470080876548
Merged-chr5-123144560-2	chr5	123144060	123145060	+	879.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	2367.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	3.93676859789825	3.90558112099669	3.95159946307712	3.95997964837605	3.77401367814356	3.92246539053422	-0.146768555343237	0.77155730441075	0.943614978016208
Merged-chr10-128149805-4	chr10	128149306	128150306	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001039080, intron 3 of 13)	intron (NM_001039080, intron 3 of 13)	26762.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	4.01567795829032	4.34006722487455	4.59996005013043	3.94182947551592	3.95965292848468	4.04212569896477	-0.993581091060007	0.0506518343070654	0.286671053531649
Merged-chr6-129631221-4	chr6	129630738	129631738	+	771.916687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-7374.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	2.53550848109063	2.39849594942975	2.6516572774471	2.37814479005039	2.71926846208449	2.53783089266985	0.157022787307471	0.848360273506302	1
Merged-chr12-69159223-4	chr12	69158725	69159725	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-39.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	7.68483769156505	8.03461143475618	7.73204637143533	7.56286459970468	7.88254055104113	7.78854147390577	-0.110490982773052	0.648265676795023	0.901726822360623
Merged-chr18-64598139-3	chr18	64597641	64598641	+	940.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	62859.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	2.65267076195302	2.88230272946293	2.99300311417918	2.47132575654782	2.43260233090077	2.95336428505583	-1.11443258851581	0.188948839652857	0.574452291419487
Merged-chr2-119289283-4	chr2	119288783	119289783	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	541.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	8.87216425582937	9.2475940501038	8.67258779688581	8.79599687328347	9.49606751238862	8.70742930947069	0.138606849795539	0.637003182575219	0.897256731014262
Merged-chr3-95519691-2	chr3	95519191	95520191	+	894.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7095.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	5.41776055822102	5.52636983948445	5.9742289468697	5.63637103273162	6.164775238891	5.69773580735145	0.389905846191336	0.286512518584841	0.683725296730741
Merged-chr17-28217816-4	chr17	28217323	28218323	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10045.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	4.91623158023522	4.88797662474079	4.49761801157529	4.59383632336299	4.33901471295933	4.22849124260348	-0.945604853789944	0.0362052306272692	0.234058335019332
Merged-chr14-31160686-4	chr14	31160194	31161194	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_138672, intron 11 of 68)	intron (NM_138672, intron 11 of 68)	7947.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	7.62954678752051	7.42939451790847	7.42477713375718	7.81515284114913	7.79288801248048	7.3472796681222	0.257495661420695	0.304949200724837	0.701230797737315
Merged-chr5-117147396-3	chr5	117146902	117147902	+	928.1666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	13814.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.95159826914592	5.93912770281155	5.48660803339979	5.10455770342974	4.58506437270885	4.92795069365984	-1.87560066106084	1.48376136716292e-06	7.66837365458958e-05
Merged-chr9-65582572-2	chr9	65582072	65583072	+	678.5	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-2485.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	3.34892357833904	3.20257149805025	3.23728509937072	3.90301036675101	3.58932931789781	3.60460772258138	1.65583844463842	0.00666603556736648	0.0753931612735394
Merged-chr7-80024380-6	chr7	80023884	80024884	+	991.7666630000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146000)	promoter-TSS (NM_001146000)	-430.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	6.52475775859957	6.58826568144036	6.68006913868564	6.68700049374562	6.5421325878809	6.67528289889175	0.0593737198844407	0.818103704228383	0.956842917576288
Merged-chr15-99816954-2	chr15	99816454	99817454	+	630.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001113545, intron 4 of 10)	B1_Mur1|SINE|Alu	3195.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	5.57009343941661	5.41515681510643	5.32056596682881	6.15481790543559	6.0854647621092	5.87824904214526	1.09159610077115	0.000626332486049969	0.0125353836538279
Merged-chr17-63430613-3	chr17	63430137	63431137	+	784.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_015794, intron 4 of 8)	MTEa|LTR|ERVL-MaLR	69943.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	2.48895478556254	2.5464687493198	2.70221238631431	2.46659339181433	2.27887051709469	2.65540493131065	-0.650869721661288	0.432585925163282	1
Merged-chr2-66132104-3	chr2	66131596	66132596	+	961.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7303.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	2.27116908983259	2.42959992373608	2.35431239092456	2.67115554304871	2.4985507800758	2.74951532079642	1.77741174732531	0.0357729810004828	1
Merged-chr17-31277367-4	chr17	31276861	31277861	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_025290)	promoter-TSS (NM_025290)	-5.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	2.31309891068813	2.3755552610966	2.30031141057162	2.37137186841851	2.24212045644909	2.50358911951361	0.26210852770808	0.753951427296288	1
Merged-chr1-35975895-3	chr1	35975405	35976405	+	844.5	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx8|LINE|L1	-92495.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.29810728192195	3.90856067222955	4.43428513354696	4.31666494814544	4.12422106059955	3.95033950112251	-0.229784174018139	0.65498196621972	0.904048560566546
Merged-chr5-113986033-4	chr5	113985544	113986544	+	903.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	7713.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	4.56229779280327	4.75835223344455	5.14412020444581	4.50008173531681	4.78848376088595	4.88489517711353	-0.229569012508625	0.600809166138719	0.881855262262798
Merged-chr11-106561046-4	chr11	106560558	106561558	+	996.4583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	51872.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	5.79761605741331	5.78380973513373	6.09355364487196	5.391532588498	5.56536667388036	6.00942978537159	-0.400133450968664	0.251243335455707	0.648731936769727
Merged-chr11-107349354-2	chr11	107348854	107349854	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	121366.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	3.67830756289494	3.82407923234775	3.76179019737643	3.90591034913863	3.80985043948151	3.72635055646848	0.201605495893564	0.701708637764684	0.921463870335944
Merged-chr2-163720015-2	chr2	163719515	163720515	+	841.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25978.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	2.01375567070464	1.87549598786798	1.91383264506657	2.06675412000311	1.91494568735629	2.19237381806669	0.971929438998539	0.311045669183359	1
Merged-chr19-42017474-3	chr19	42016998	42017998	+	686.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-18540.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	6.08370226532363	6.37555653470049	6.20488132284527	6.03951298135771	5.62931490460067	6.30367507111701	-0.378401435843659	0.254132788274932	0.651179145391095
Merged-chr17-53488798-4	chr17	53488288	53489288	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025887, intron 2 of 5)	ID_B1|SINE|B4	9554.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	6.40300017260974	6.25438421421741	6.22150528641601	6.51479841909829	6.62889619995723	6.54906259003889	0.435721942896036	0.103714806954084	0.42934834114604
Merged-chr1-161976110-2	chr1	161975585	161976585	+	845.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001204904, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3551.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	3.38472773082822	3.47220678502701	3.84788606966429	3.72966467479342	3.51269981892366	3.51156514250554	0.049878418099097	0.933058810765224	0.985356091252617
Merged-chr19-34290454-4	chr19	34289988	34290988	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001146708)	promoter-TSS (NM_001146708)	-171.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	3.95201820097911	3.83079746021782	3.75799073388554	4.48325780578007	4.07399818925869	3.94148521823861	0.987848231665499	0.0616139707265912	0.322094319043676
Merged-chr13-67080718-2	chr13	67080218	67081218	+	766.333374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	827.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	4.70293251548991	5.04195300636666	5.40561875885443	5.13958988384407	5.02222495301567	4.93084699967006	-0.0733031634123981	0.859166951871077	0.967225399546603
Merged-chr13-52033229-3	chr13	52032752	52033752	+	874.6666869999999	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-63489.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.11145627728644	4.83225847149982	5.64281801683038	5.44969633004337	5.45241562216477	5.5509009547491	0.505862965198942	0.204920267088966	0.595601362265388
Merged-chr11-117880401-2	chr11	117879901	117880901	+	821.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6875.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	5.78361164805975	6.16696607723312	6.06371406412339	5.44835465654993	5.29314775058514	5.23828494613799	-1.260902768757	0.000164046974729543	0.00426563146040493
Merged-chr2-167740991-4	chr2	167740490	167741490	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	49813.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.20632826656798	5.90431063410732	6.21511123891244	6.0836225875983	5.9016470776407	5.94999341290734	-0.228246827248293	0.448631787125717	0.807334258089693
Merged-chr15-100449724-5	chr15	100449285	100450285	+	787.099976	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-19226.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	5.80994164160191	5.78638816552471	6.07417351071231	6.12464741412112	6.38394205728726	6.09114912362378	0.567333065336943	0.0607837016979914	0.319387855610097
Merged-chr16-34690604-4	chr16	34690127	34691127	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172824)	promoter-TSS (NM_172824)	11.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	5.30678258476502	5.41684119510146	5.26032843744354	5.40268579758824	5.35688013802027	5.41765784962942	0.109478429386509	0.745010308435117	0.936032341688524
Merged-chr3-137863406-2	chr3	137862906	137863906	+	966.0	f1_balb.idr|f1_c57bl6.idr	Intergenic	RSINE1|SINE|B4	-1081.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	4.5141137112845	4.36836274929088	4.53631973049651	4.61645172184969	4.78572225917262	4.60301328026819	0.507925425870147	0.226239060700363	0.621140322788657
Merged-chr5-137823413-4	chr5	137822926	137823926	+	824.208374	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001005426)	TTS (NM_001005426)	12852.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	4.96180400321423	4.84313254561127	5.14993906298959	4.8507452657941	4.65881491356826	5.1509704359449	-0.207737947017918	0.608954260354576	0.885053989692691
Merged-chr7-25782592-6	chr7	25781988	25782988	+	718.400024	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009465, intron 4 of 19)	RLTR20A4|LTR|ERVK	6245.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	4.62713489817943	4.17778913154338	4.92140202372219	4.36588731160213	4.73556788211569	4.77981727177239	0.0863709430316811	0.858583923826026	0.966933063363181
Merged-chr6-83643497-10	chr6	83642932	83643932	+	871.790466	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	RMER1A|Other|Other	12684.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	5.16137641931502	5.14844964715958	5.49104940078954	4.96426866670045	4.82322349273566	5.3030602233383	-0.489162609912645	0.209434542486723	0.60098798725147
Merged-chr12-12267231-4	chr12	12266725	12267725	+	752.083313	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	5086.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	5.68194944048367	5.28949737035945	5.41616282893918	5.71131760422771	5.60016855255157	5.5099725574951	0.256566150663292	0.451330812325921	0.808957790071745
Merged-chr3-105047036-4	chr3	105046550	105047550	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	5903.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	7.47742149479547	7.56449087382616	7.22882367094799	7.51146687471028	7.8718614425899	7.35787710093451	0.249929076041868	0.340650940309791	0.730312363220063
Merged-chr4-97777293-3	chr4	97776778	97777778	+	913.7777710000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-348.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	5.17011717059317	5.03332013522589	5.43401430273361	5.49546485500042	5.2318363856739	5.38064696197219	0.318195086874241	0.379254017019804	0.761693657933474
Merged-chr17-71215378-4	chr17	71214856	71215856	+	952.8125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	10702.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	7.03465761434067	7.13911410895263	7.26268879093633	7.21130127594336	7.75217305624394	6.97175996353542	0.331269518228239	0.260627759071557	0.658078369145661
Merged-chr4-124738950-4	chr4	124738464	124739464	+	798.900024	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_151694, intron 3 of 3)	intron (NR_151694, intron 3 of 3)	-2886.0	NM_008385	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	5.30658164383148	4.90786529685409	5.54660253883077	5.35455472389521	5.36894312410081	5.3244596761451	0.163996272916512	0.664906149936605	0.907721942545399
Merged-chr7-43580018-4	chr7	43579513	43580513	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357769, intron 1 of 3)	intron (NM_001357769, intron 1 of 3)	427.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	7.04616099196605	6.83341696678308	6.77987280199591	7.21170398173877	7.45798965217985	7.14924102096829	0.589963514815261	0.0204731219770212	0.163958376656784
Merged-chr1-91455563-1	chr1	91455063	91456063	+	708.0	f0_c57.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	3765.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	6.49373007031652	6.35847381138514	6.17323135581894	6.88569286645031	6.45260833158785	6.45917622087698	0.421332980169614	0.153518940212305	0.522476745799114
Merged-chr19-6278897-4	chr19	6278429	6279429	+	890.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2033.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	5.89069044826805	5.57147232679325	5.80176278688823	5.64121136672059	5.40467033820008	5.93275704601833	-0.175773076483569	0.609433092997211	0.88517286252283
Merged-chr9-107555804-2	chr9	107555307	107556307	+	856.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	1224.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	6.34930336272875	6.53490584510889	6.5541268270153	6.76214717072894	7.08452481756851	7.01572993358463	0.759553407261774	0.00418676892359869	0.053786115268612
Merged-chr16-33833473-2	chr16	33832973	33833973	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001145884, intron 1 of 14)	(TTTTTG)n|Simple_repeat|Simple_repeat	3808.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	6.16274919977713	6.24679139691356	6.05107141470837	6.36648099430749	6.18390023574106	6.13471873859988	0.12091742809015	0.671160780475647	0.91032888685376
Merged-chr4-8647399-6	chr4	8646898	8647898	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	CpG	-43008.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	8.10939929737653	8.21232317806062	7.95724083235704	8.22142160093078	7.96470238947842	7.88616735982772	-0.0946062612298409	0.678015376586978	0.913302826194187
Merged-chr8-120740179-2	chr8	120739679	120740679	+	822.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	1540.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.06639437889448	5.3535914854147	5.55855820961166	5.65926228680998	5.64910788778731	5.25784735373096	0.409427091843783	0.264786960729534	0.662666328517541
Merged-chr5-103593143-2	chr5	103592643	103593643	+	547.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011204, intron 45 of 47)	intron (NM_011204, intron 45 of 47)	36260.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	2.7925886825495	2.89054591953342	3.04699423409135	3.16363502167478	2.86390104815918	3.28552067544599	0.921169430447624	0.192790966502754	0.579815330204255
Merged-chr4-102587113-2	chr4	102586613	102587613	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001177982)	promoter-TSS (NM_001177982)	-445.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.25637319767265	4.0912733909642	4.03853621836456	4.1340998621793	4.12367196889695	4.37927107958846	0.203885028890875	0.669895478716781	0.90979248409737
Merged-chr2-73513896-3	chr2	73513412	73514412	+	630.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15575.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	5.5211975876628	5.1303780605583	5.78958550760056	5.49882990481415	5.20460911182348	5.28131338683975	-0.319715397333424	0.400300369036424	0.776469056269267
Merged-chr7-126554201-4	chr7	126553708	126554708	+	956.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_146200, intron 15 of 20)	RSINE1|SINE|B4	12158.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	4.10800056674306	4.0556645538582	4.14740989528213	4.42449818809482	4.40654774271063	4.39668307013842	0.839065692953028	0.0638872561332108	0.329363742771512
Merged-chr4-150438799-4	chr4	150438316	150439316	+	704.291687	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001085492, intron 3 of 22)	intron (NM_001085492, intron 3 of 22)	156900.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	2.68601704430588	2.87379687363252	2.9385878446788	3.21633731773595	3.14565681995437	3.30076242981801	1.84562794197578	0.00964931417774822	0.0980461758581114
Merged-chr9-110676814-4	chr9	110676307	110677307	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	20304.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	7.2273664495177	6.84608879540722	7.09858753656524	7.20153882119974	7.39419796479293	7.03794946605794	0.243005660334943	0.35356871196122	0.740752980785305
Merged-chr9-57440757-3	chr9	57440236	57441236	+	897.533325	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-622.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	4.67534727910261	4.7962697719253	5.00462242204607	4.63866755037378	5.15829226337556	5.1651646225034	0.407922374078148	0.329204222080682	0.721152738507735
Merged-chr13-95950897-3	chr13	95950335	95951335	+	735.666687	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-58913.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.1747860933323	4.31381088105246	4.25091854633558	4.49285158136674	4.68591390702947	4.53970962961007	0.85224306306454	0.0524968976527731	0.293023530299295
Merged-chr17-33564815-4	chr17	33564320	33565320	+	984.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	9113.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	5.93060383058261	6.39001840584111	6.40278406094841	6.10380641984142	6.35419643010892	6.38980200474747	0.0541211853704944	0.860650535748541	0.967588655430938
Merged-chr11-118169672-2	chr11	118169172	118170172	+	682.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001112700, intron 11 of 12)	B4A|SINE|B4	-40453.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	3.02880374079273	2.60799714666055	3.07921507446263	2.61473131743187	2.42645694819038	2.86684281258085	-1.45603957349375	0.0832919175748622	0.381911824410048
Merged-chr13-16012451-4	chr13	16011965	16012965	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_008380, intron 2 of 4)	intron (NM_008380, intron 2 of 4)	614.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	4.68093376372602	4.62919641734853	4.63831739034159	4.51037947315119	4.45080684356835	3.99234120812288	-0.746932638209748	0.113805855671752	0.450659116018766
Merged-chr4-136469781-4	chr4	136469285	136470285	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	24.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	7.15002526103372	7.17311801086456	7.27792498054495	7.10839963401652	6.85423915553163	7.31337726184443	-0.155555253411697	0.543371691647784	0.857551302506722
Merged-chr18-39453013-1	chr18	39452513	39453513	+	644.0	f0_balb.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	34232.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.23371127975979	3.20133958549976	2.91998824732673	3.31246832970485	3.10858841400891	3.18368893082476	0.300747072067321	0.654565563340034	0.903872559164033
Merged-chr4-55353210-3	chr4	55352721	55353721	+	777.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	3179.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	3.98533691845126	4.41387895216583	4.15626607957936	4.70244574049637	4.57181318814842	4.70240768285601	1.15486648881439	0.0132606390421035	0.122340753233767
Merged-chr6-54022558-4	chr6	54022048	54023048	+	861.8541869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-17384.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.56478703390581	3.57767017267607	3.76175181530747	4.48361651935501	4.45601208092347	4.28444765437743	2.445009327945	3.09458687274557e-06	0.000145787678599559
Merged-chr11-77816219-4	chr11	77815694	77816694	+	980.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001291213, intron 2 of 40)	intron (NM_001291213, intron 2 of 40)	14896.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	3.50921891613594	3.22333989239117	3.27807574640628	3.37944412357074	3.27442601038362	3.10644863623647	-0.332702714734169	0.602824875380962	0.882397657327329
Merged-chr5-121598371-2	chr5	121597871	121598871	+	669.5	f1_balb.idr|f1_c57bl6.idr	TTS (NM_178799)	TTS (NM_178799)	-4547.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	5.39509775997563	5.37599988867851	5.60628512640559	5.19663158365309	5.04391103200787	5.30242695211582	-0.559875849989294	0.110363613300552	0.443929978512633
Merged-chr10-94573298-2	chr10	94572798	94573798	+	1000.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-1959.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.06466885141179	4.90308892182526	4.78547898017582	4.90896147861821	5.08415838665116	4.68676088979691	-0.027166497800356	0.946043661699603	0.98796006280508
Merged-chr1-61649223-4	chr1	61648725	61649725	+	944.8333130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	10401.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	3.97583411476617	3.95479175549745	3.67223414801654	3.19894522527831	3.14129548037025	3.21243736325066	-2.84366785275868	1.84536220301669e-05	0.000681228474661102
Merged-chr13-9409215-4	chr13	9408709	9409709	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	132684.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	6.04030666194147	6.11658932751054	6.09522150133486	5.40440233200731	5.94043836258512	6.11374049389454	-0.406993971793135	0.229271910491779	0.624749364077556
Merged-chr9-15034204-8	chr9	15033679	15034679	+	874.1458130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	11299.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	5.96310753898738	6.32164628523404	5.83878852585871	5.89359119770848	5.50764656185691	5.4795734851071	-0.769747208126168	0.0254887590414078	0.189279578594091
Merged-chr13-73603398-2	chr13	73602898	73603898	+	1000.0	f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	-604.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	6.69274769822485	7.31600231148645	6.67505061986169	6.99772620747305	7.08009308414561	6.59269946441817	-0.0392949909571018	0.901000990711983	0.977060870926891
Merged-chr3-96697080-4	chr3	96696577	96697577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_018812)	promoter-TSS (NM_018812)	1.0	NM_018812	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	5.25708314609886	5.29149477647814	5.5015955229579	5.47280021243826	5.10566026446797	5.26736240650342	-0.119559377799862	0.73846475998681	0.934032187674406
Merged-chr15-94657978-2	chr15	94657478	94658478	+	844.25	f1_balb.idr|f1_c57bl6.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	28793.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	2.25379876176372	2.23457481993535	2.38846501727328	2.71083767552459	2.79689032040236	2.84779369078303	3.78568818579504	0.000296147973948252	1
Merged-chr3-60528415-4	chr3	60527894	60528894	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	27215.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.02337112939665	7.06387638539031	6.83226252137682	7.29048053193878	7.39246589050346	6.95119227200839	0.379599845617033	0.144159997660714	0.506856464351927
Merged-chr1-173451863-4	chr1	173451375	173452375	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	31271.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	5.21831615001545	5.27919313749939	5.44828858263528	5.45363082422836	5.58499312239462	5.56701623123741	0.440362677356074	0.187829963673258	0.57311901787035
Merged-chr10-77515853-4	chr10	77515332	77516332	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_133998)	promoter-TSS (NM_133998)	-19.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	7.23703772792943	7.35396903722306	7.14728981124017	7.48990145242731	7.36258156721685	7.45530821774878	0.26764738539656	0.247700745334613	0.644688258298482
Merged-chr7-105778607-4	chr7	105778089	105779089	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	8961.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	6.26665741812483	6.04401866846663	6.20382713460068	6.42315958338118	6.11981339819989	6.11404091700961	0.0928333844255833	0.751549464191674	0.937886504040509
Merged-chr9-21221713-4	chr9	21221219	21222219	+	916.0416869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	B3|SINE|B2	17613.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	6.19122683722172	6.35426562142542	6.01032330758766	6.20762971285568	6.27833672657461	5.87042464108808	-0.0983292586449042	0.74816055129324	0.936880860325556
Merged-chr12-102373246-2	chr12	102372746	102373746	+	740.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	66567.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	3.22215290991728	3.39488730975636	3.56724258240896	3.33441417170456	3.29570193682579	3.53494251645638	-0.0371561541458853	0.951517233590854	0.988832566975918
Merged-chr10-81129127-4	chr10	81128603	81129603	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-7168.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	7.03203446912863	6.88373763143418	6.62531897647473	6.78848337996819	7.09502570762776	6.94947770272803	0.134429331635177	0.616024707457549	0.888205650504781
Merged-chr6-86503692-4	chr6	86503190	86504190	+	977.125	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-15463.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	6.26672624462289	6.34560011429096	5.90361748029494	6.31834112553839	6.47136624612034	6.51400055925921	0.389388613703941	0.185844860395412	0.570175160932842
Merged-chr16-90215397-4	chr16	90214901	90215901	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-5341.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	7.07375159631723	6.93520166286853	6.94858607278073	6.79734517322483	7.17237215562449	6.92205247366152	-0.011074237548904	0.965710002414646	0.99204066600196
Merged-chr5-96949350-1	chr5	96948850	96949850	+	779.0	f0_balb.idr	Intergenic	URR1A|DNA|hAT-Charlie	28078.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.821548095494	4.91296666706913	4.58510691615757	4.63522501031966	4.70826386774177	4.22187497862923	-0.552175054050809	0.221393108192564	0.615986014394665
Merged-chr9-44772909-4	chr9	44772420	44773420	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_023831)	promoter-TSS (NM_023831)	-89.0	NM_023831	76568.0	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	6.21308828930183	6.21579873568393	6.13740350604001	6.08752182637902	6.24401239115322	6.21886012027388	-0.00986222213620986	0.971806249096094	0.993783614343214
Merged-chr15-6525557-3	chr15	6525029	6526029	+	782.222229	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54318.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	5.13663584399147	5.34709741864176	5.02673605191126	5.35455319217342	5.0093680132831	5.26262743517382	0.0504945202186856	0.892396898774533	0.975109141867779
Merged-chr5-111177771-2	chr5	111177271	111178271	+	563.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152926.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	6.06914187548818	6.34428397934606	6.1986915916347	6.01960590130798	5.88044980729856	6.04464227450029	-0.399209840232875	0.172803695205244	0.551474167648098
Merged-chr13-52602248-4	chr13	52601729	52602729	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011518, intron 1 of 13)	Tigger17a|DNA|TcMar-Tigger	5347.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	7.64091698263222	7.50352713734045	7.42661726466772	7.17916896357723	7.2034495958099	7.05466581263612	-0.560164495613176	0.0163144565470057	0.140789088868757
Merged-chr5-38503163-4	chr5	38502660	38503660	+	867.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1008.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	3.75726836313057	3.26049266532195	3.50736270262609	3.72954987336644	3.6590745024451	4.11467540428861	1.05624189317951	0.0856855705013169	0.387639946459832
Merged-chr15-59649224-4	chr15	59648744	59649744	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_144549, exon 1 of 3)	exon (NM_144549, exon 1 of 3)	590.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	8.62512533678634	9.09430844141748	8.79402770343551	8.53381878001622	8.83337718283679	8.76896932251729	-0.186812497060544	0.422876995317147	0.791602902730015
Merged-chr2-12923984-4	chr2	12923477	12924477	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001305436)	promoter-TSS (NM_001305436)	-64.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	5.3112360854588	5.2002001615243	5.1156349095385	5.45579686105278	5.43346990789943	5.18096656250282	0.307231927105524	0.382441118062866	0.764000781517693
Merged-chr4-149056042-4	chr4	149055549	149056549	+	889.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	43763.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	4.13704284017969	4.13313092928128	4.28853565822795	3.42418530562522	3.23130063892763	3.47218478649145	-3.03034241958494	1.20056850242947e-06	6.35880992680786e-05
Merged-chr7-73594648-4	chr7	73594131	73595131	+	866.104126	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-36236.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	6.51778262752204	6.79395863786658	6.66000933087513	6.6627754731131	7.17635123594946	6.79832138992482	0.38097701862429	0.180578991960052	0.562547768360139
Merged-chr9-121857765-4	chr9	121857269	121858269	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001357839)	promoter-TSS (NM_001357839)	27.0	NM_001357841	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	8.85671144404354	8.89880252254064	8.46643639354825	8.82630767938221	8.77525557219988	8.55491209467132	-0.0461734035081859	0.840176804046214	0.962819298477451
Merged-chr2-33871072-3	chr2	33870574	33871574	+	674.0	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16872.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.86716146966312	6.39418227497528	5.73900022360514	5.3753405826773	5.77871136367889	5.87805772984835	-0.617801058381816	0.0904991648381771	0.400141054671079
Merged-chr2-91710904-4	chr2	91710404	91711404	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_145528)	promoter-TSS (NM_145528)	52.0	NM_001356518	241547.0	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	8.2682407228026	8.75594327759958	8.0896512122917	8.23690472819849	8.71380859740306	7.86435910939316	-0.111964325941414	0.715408737630318	0.926392907650078
Merged-chr14-25401728-4	chr14	25401212	25402212	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-57473.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.67890038138743	5.45562375817383	5.89945088108398	5.75430425299487	5.32553464135862	5.64280896404892	-0.18850993105338	0.591293609875711	0.877539822805302
Merged-chr8-111545665-3	chr8	111545207	111546207	+	768.555542	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001168623, intron 1 of 4)	B1_Mm|SINE|Alu	7364.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	4.50509209874437	4.13085990459052	4.37039020655077	3.9997984080487	3.48681988145099	3.93147743777394	-1.56178655249471	0.00485457723058274	0.0599940089413826
Merged-chr14-50997292-4	chr14	50996746	50997746	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10505.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	4.02062626349004	4.26145559660368	4.28824719197508	4.08288752646523	4.205194407678	4.31211302580028	0.0222424658015071	0.9626071337891	0.990920491491941
Merged-chr1-134361953-4	chr1	134361476	134362476	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	23.0	NM_020588	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	7.33510513943618	7.24634934493814	7.129972728168	7.30653554248831	7.1998175128018	7.11050038936341	-0.0503939034235898	0.831592961878124	0.960478468368024
Merged-chr11-107340175-2	chr11	107339675	107340675	+	858.875	f1_balb.idr|f1_c57bl6.idr	intron (NR_153311, intron 1 of 9)	B4A|SINE|B4	130545.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	6.83882703638762	6.7219020222714	6.45065685515944	6.99221741285419	7.04541844154469	6.93923080595341	0.470362964602997	0.071305558367972	0.350371613362597
Merged-chr2-52884407-4	chr2	52883869	52884869	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	MTD|LTR|ERVL-MaLR	26501.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.43590507394936	6.39423524326613	6.63823390372795	6.21540609505613	6.38913882837006	6.53428524260609	-0.171205117389358	0.538173300956143	0.855027269644122
Merged-chr11-113738102-4	chr11	113737601	113738601	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	13059.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	3.39651354304193	2.81871300240505	3.08991158843791	2.89557106686297	2.95835246794732	2.78522181885886	-1.10803626451619	0.141599571838769	0.502273834608201
Merged-chr2-52990595-2	chr2	52990095	52991095	+	955.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	132727.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	3.47030706089054	3.23262493905276	3.14000937643889	3.39907030952915	3.11616082983579	3.27386148698924	-0.111860327850842	0.862336900885811	0.968030555278477
Merged-chr1-55667147-4	chr1	55666636	55667636	+	937.9166869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	261190.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.8087315907979	3.60054718151503	3.80183660134449	4.1715587777086	4.30242532568686	4.25828860247733	1.54923363455471	0.0022999448372645	0.0344011882112358
Merged-chr4-154934195-3	chr4	154933696	154934696	+	858.555542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-6119.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	5.90774887341701	5.78472974033561	5.99957377291392	6.52448150088823	6.56102054522949	6.64820800152022	1.14319123187777	3.97899594388498e-05	0.00130374239656904
Merged-chr3-137953359-4	chr3	137952860	137953860	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28189.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	7.00407056790483	7.02326458156758	7.00947994389136	6.99226341693955	7.38714380407225	6.98515237361462	0.203412189532079	0.431467135657426	0.796911573849146
Merged-chr10-78352445-4	chr10	78351973	78352973	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-773.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	6.03274644705954	5.67972699650044	5.65889586680687	6.02551292143839	5.67205393861082	5.63667054048793	-0.0288522855537647	0.931715750342199	0.984929477721491
Merged-chr13-20562455-4	chr13	20561953	20562953	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_198093, intron 1 of 6)	MIR3|SINE|MIR	89463.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.8669590662988	3.52497232805657	3.65865231693807	3.55123973867065	3.35231777318681	3.51314524839122	-0.794292400820183	0.172462277458094	0.551021049139233
Merged-chr16-8768728-3	chr16	8768195	8769195	+	996.111084	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-30353.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	5.20834362692333	5.33384606983831	5.68706923571107	5.33960764665129	5.60432981276154	5.42647788829237	0.106247950133764	0.766888980508645	0.942573703853445
Merged-chr4-152008224-3	chr4	152007733	152008733	+	794.444458	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	-658.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	5.83187914794926	6.11775756384993	5.90682483648858	5.67447304046835	5.73840323116582	5.41099002270487	-0.599655358442375	0.0646317712656716	0.33127266375964
Merged-chr9-22096241-4	chr9	22095724	22096724	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-3029.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	5.83208679404796	5.59410402698906	5.20599748282482	5.6231029505131	5.3567857048249	5.08504556473327	-0.380093046972048	0.325790361074786	0.718259738003882
Merged-chr5-147861123-4	chr5	147860615	147861615	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	487.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	7.57596227518252	8.17092815851571	8.04061816036297	7.88097858620889	8.08186731291632	7.84556426712027	-0.0151504121986872	0.953150151786271	0.989359300570295
Merged-chr15-84985943-4	chr15	84985433	84986433	+	967.375	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	2038.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	5.36982017330282	5.29286417952711	4.78550670043073	5.43069105637869	5.4530785604752	5.27372086052465	0.402193582332132	0.295979985177788	0.692768005813598
Merged-chr4-10952567-4	chr4	10952051	10953051	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	L1_Mur3|LINE|L1	55068.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.74329126194292	4.89427997656066	5.17648302707171	5.00383336340632	5.19348618237487	5.20856640358217	0.426625532449411	0.267752513365685	0.664975925109882
Merged-chr6-70855725-4	chr6	70855196	70856196	+	974.25	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001313918, intron 1 of 2)	L2|LINE|L2	11181.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	6.12312589846615	6.48874197080942	6.58581612605468	6.31764241241662	6.66310538968298	6.57891097255496	0.198042076391403	0.504024518693078	0.837420592739604
Merged-chr11-74639809-2	chr11	74639309	74640309	+	575.625	f1_balb.idr|f1_c57bl6.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-9686.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	3.79292640591087	3.62811702949327	3.7448732801907	3.55507630462012	3.67398672294722	3.76369757633704	-0.196767110988927	0.717435697569159	0.927077249271794
Merged-chr12-108178456-4	chr12	108177964	108178964	+	949.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_028262, intron 1 of 12)	CpG	820.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	6.42644953534127	6.15072080644962	6.17132794124939	6.19473873550275	6.22449772438274	6.12299090664538	-0.125433622738504	0.660470969498764	0.905981809862142
Merged-chr2-45113082-4	chr2	45112577	45113577	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_001355289, exon 2 of 11)	5' UTR (NM_001355289, exon 2 of 11)	175.0	NM_001355290	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	7.52468221324097	7.49550488000485	7.46362789208953	7.5431498909957	7.93500077189652	7.4246271415212	0.244990855889791	0.328730436688945	0.720905796252831
Merged-chr6-129361361-3	chr6	129360868	129361868	+	773.333313	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_177686, intron 5 of 5)	intron (NM_177686, intron 5 of 5)	11124.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	4.09531427128379	4.2755260560245	4.50727272537786	4.32777435981184	4.01668003886987	4.45486579088521	-0.0700330783898088	0.88615330456071	0.973708424661114
Merged-chr1-185363764-4	chr1	185363270	185364270	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	726.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	8.37293220672055	8.37276607535816	7.90305259927751	8.16756735168537	8.22872633380488	7.76753544120414	-0.230555488751945	0.372167001832757	0.756099728816208
Merged-chr16-97537959-1	chr16	97537459	97538459	+	1000.0	f1_balb.idr	intron (NM_013606, intron 1 of 13)	intron (NM_013606, intron 1 of 13)	1876.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	3.5057909797504	3.8260938660616	3.93400049315931	3.67584471537688	3.67282587747872	3.90886545346191	-0.0371491461158605	0.946986212410595	0.988007649185823
Merged-chr2-157368220-2	chr2	157367720	157368720	+	968.833374	f1_balb.idr|f1_c57bl6.idr	intron (NM_026968, intron 1 of 2)	MER44B|DNA|TcMar-Tigger	626.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	7.82044108241787	7.94254696769458	7.80980678934114	7.8801608327625	7.89387046330206	7.84960396505752	0.0206599916675228	0.922379712381412	0.982542868764899
Merged-chr6-119395741-6	chr6	119395222	119396222	+	975.805542	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-6988.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.12715585834851	5.30846542097948	5.21739413703028	5.19634250800497	4.7611644649748	5.04679639566375	-0.448684516180835	0.238993529848714	0.635645304195616
Merged-chr11-96318602-4	chr11	96318076	96319076	+	973.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	5' UTR (NM_010459, exon 1 of 2)	5' UTR (NM_010459, exon 1 of 2)	309.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	6.03699594742292	6.34911923323839	6.31820351620701	6.660054939948	6.41013504890625	6.43498496719592	0.43722793328013	0.125688071654088	0.474301999544486
Merged-chr8-70595172-3	chr8	70594664	70595664	+	909.3333130000001	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	exon (NM_023627, exon 4 of 11)	exon (NM_023627, exon 4 of 11)	683.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	5.05589870321128	4.670033016364	4.65403215905351	4.87329150438331	4.79288585092467	4.50032401180659	-0.168770291962553	0.694452582640573	0.919210273513843
Merged-chr7-55857905-4	chr7	55857391	55858391	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	15820.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	5.99853893155038	5.55300748563127	5.88935901930329	6.09393152698516	6.0477810435808	6.06560363190075	0.427361593413778	0.172846803817998	0.551550730636907
Merged-chr6-34862629-4	chr6	34862129	34863129	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-517.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	8.9372273755759	9.31677186771249	8.49455358234116	8.81099040100652	9.33398156980516	8.52056015663672	-0.0338800290322154	0.912400098977971	0.980363124210176
Merged-chr16-18251515-2	chr16	18251015	18252015	+	742.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_001357146, intron 6 of 11)	intron (NM_001357146, intron 6 of 11)	2632.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	2.19320917198996	2.45725912762281	2.51795775731616	2.45549843460979	2.4883806572411	2.59160638175794	0.714241416068644	0.399413803333424	1
Merged-chr7-19477271-3	chr7	19476770	19477770	+	877.6666869999999	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-18776.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.50544180139206	2.43324233855813	2.61788702650527	2.70929663279744	2.49524170888499	3.09691033364765	1.45969316412636	0.0752948329508074	0.361310983862213
Merged-chr9-75411706-3	chr9	75411207	75412207	+	1000.0	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NR_040719, intron 1 of 3)	MER110A|LTR|ERV1	1523.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	4.37237211439979	3.92268111412949	4.10915685151865	4.80082926299872	4.92764675829518	4.47322461823155	1.52901448588737	0.00152703028665688	0.0250317446990043
Merged-chr8-11559023-2	chr8	11558523	11559523	+	758.166687	f1_balb.idr|f1_c57bl6.idr	intron (NM_001302459, intron 1 of 1)	intron (NM_001302459, intron 1 of 1)	613.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	5.14721932722249	5.32064712493222	5.37394061976987	5.19118550848077	4.92579617493414	5.12318494077389	-0.416299781559519	0.252259026820183	0.649735854202467
Merged-chr9-90014851-4	chr9	90014380	90015380	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-39387.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	5.0798519858045	5.34635849202782	4.93560369760038	5.25490127893241	5.71339346154414	5.50436254896079	0.72474492711252	0.0554950211023648	0.302974195648945
Merged-chr14-79441648-4	chr14	79441145	79442145	+	988.9583130000001	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-10190.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	5.43479182724675	5.66689031253483	5.64760375092981	5.53107244880331	5.61423706442071	5.39212240006084	-0.11460094882433	0.728964667767147	0.930478966998914
Merged-chr11-55005775-2	chr11	55005275	55006275	+	578.5	f1_balb.idr|f1_c57bl6.idr	intron (NR_138556, intron 8 of 24)	intron (NR_138556, intron 8 of 24)	27696.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	2.83399486028802	2.45236605501072	2.73915978323696	2.39821045661464	2.34728401625931	2.62952163359956	-1.34821320429001	0.110574832890329	1
Merged-chr14-61677487-2	chr14	61676987	61677987	+	696.0	f1_balb.idr|f1_c57bl6.idr	intron (NR_028264, intron 1 of 6)	MERVL_2A-int|LTR|ERVL	4886.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	5.1454252352816	5.02378618740653	5.17365284007884	4.85417168157494	5.09119714806788	5.2370067237562	-0.0987586631627954	0.791521563248449	0.949762954296369
Merged-chr5-31217792-2	chr5	31217290	31218290	+	745.166626	f1_balb.idr|f1_c57bl6.idr	intron (NM_008014, intron 1 of 9)	intron (NM_008014, intron 1 of 9)	2755.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	3.07818218379771	3.14228374165571	3.16136714041768	3.01872565279107	3.09931729921642	3.39514398878994	0.203602859589869	0.75600801551256	0.939525277496365
Merged-chr7-75649215-3	chr7	75648713	75649713	+	712.06665	f0_balb.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	193679.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.14906911258777	4.20745818794712	4.21475765440223	3.82097842880065	3.59996787013629	3.80186927619673	-1.41286174398092	0.00608921200270848	0.0705179056814707
Merged-chr10-81037349-4	chr10	81036850	81037850	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_001358898)	promoter-TSS (NM_001358898)	-19.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	5.38066478969126	5.26829315846734	5.39168323056277	5.56344470071176	5.32739185057991	5.64919110236632	0.320032854529961	0.348174791387978	0.736087868121677
Merged-chr11-106150428-2	chr11	106149928	106150928	+	870.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_011947, intron 12 of 15)	intron (NM_011947, intron 12 of 15)	9499.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	3.34807192624112	3.11615852228881	3.379282755712	3.34621925552128	3.42029793167412	3.50351335811362	0.551444365875159	0.36720502177532	0.752113401392775
Merged-chr8-119820162-2	chr8	119819662	119820662	+	544.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	20417.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	2.92844087292929	2.74836490528153	3.09579722033843	2.98901548010612	2.93560694417491	3.27562054213457	0.659217898472708	0.351613370673133	0.739403630741215
Merged-chr9-99001528-4	chr9	99001016	99002016	+	956.625	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_011810, intron 4 of 4)	intron (NM_011810, intron 4 of 4)	15143.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	4.51679181550177	4.59270734247569	4.38751873368142	4.6832703118346	4.50406983427747	4.16181088642038	-0.0756008772370361	0.86915446036943	0.969777123267097
Merged-chr5-35574266-2	chr5	35573766	35574766	+	730.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_030208, intron 1 of 10)	intron (NM_030208, intron 1 of 10)	804.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	4.1317425117366	3.91547880082966	4.37503479317071	4.26868043558293	4.1234368327174	4.0377310790189	0.0132264604892687	0.978772393742989	0.995160277495735
Merged-chr3-126629714-2	chr3	126629214	126630214	+	766.0	f1_balb.idr|f1_c57bl6.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32763.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	7.9413124643646	8.00634458605884	7.39604442362965	7.63649949220977	7.92356573902791	7.38388768686883	-0.203808975106746	0.471195359527356	0.819888573544447
Merged-chr2-129590941-2	chr2	129590428	129591428	+	856.2000119999999	f1_balb.idr|f1_c57bl6.idr	Intergenic	Intergenic	-1911.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	5.83325128878741	5.71887723091404	6.08303381464359	5.40716913868698	5.51006775010847	5.71250047059293	-0.615366833464671	0.0613065102094715	0.321053973595783
Merged-chr2-155757074-3	chr2	155756567	155757567	+	883.805542	f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	LTR16A|LTR|ERVL	5850.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	3.60220651206023	3.54759939300945	3.83910747571609	5.06263028932941	5.00815277432555	4.93932091015194	4.16319012522621	8.0017406068695e-13	1.55200194036456e-10
Merged-chr7-39518684-4	chr7	39518176	39519176	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001004139, intron 1 of 3)	ID_B1|SINE|B4	910.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	7.38616697974067	7.87014843158622	7.36112710639564	7.86751643093686	8.29018140418533	7.50748257215962	0.531263547407055	0.0771647074583358	0.366166009591856
Merged-chr10-34198280-4	chr10	34197770	34198770	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	9281.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	6.59947140747331	6.37886037269544	6.67601339742484	6.54984928031177	6.6962457945812	6.73467077426846	0.175997121781931	0.50987777523583	0.840593094527851
Merged-chr16-91855917-4	chr16	91855408	91856408	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	75722.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.56244570230844	5.45676337943671	5.30107392434292	5.70682865937455	5.61587728280475	5.33214706400177	0.22558608495795	0.509566883571832	0.840445299624642
Merged-chr10-95840126-4	chr10	95839621	95840621	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	MIR3|SINE|MIR	-100542.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.86570854194525	5.13365290080358	5.49189837697976	4.91875738319018	4.84420531019455	4.8347218528718	-0.664732070089605	0.100707061862511	0.423286414777412
Merged-chr1-151654257-2	chr1	151653757	151654757	+	583.5	f1_balb.idr|f1_c57bl6.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82884.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	3.68080725790319	3.56326737567164	3.9178017501756	3.61829576198715	3.55511475221613	3.69589279707027	-0.342375358566522	0.538771505337641	0.855475830625121
Merged-chr9-61022011-4	chr9	61021511	61022511	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	Lx5b|LINE|L1	4942.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	7.27163506727776	7.28177231296279	7.11774111415122	7.21381148129654	7.35539359143991	7.30768443412513	0.0955001964954717	0.681932977086669	0.914908045004202
Merged-chr4-8700368-4	chr4	8699882	8700882	+	1000.0	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	9976.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.8087893468332	5.85142190927792	5.83440053020129	5.76364371249688	5.79770021034787	5.89566401092286	-0.0275623996446429	0.926760751031187	0.983571096425981
Merged-chr5-115565205-4	chr5	115564796	115565796	+	943.791626	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	promoter-TSS (NM_172719)	promoter-TSS (NM_172719)	33.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	5.07764744079469	4.83109881743402	5.48163872066889	5.11842223935949	4.88402666013836	4.85000013034214	-0.398686641677066	0.333794514011669	0.724614206827878
Merged-chr17-25941883-4	chr17	25941344	25942344	+	873.5	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	TTS (NM_001039038)	TTS (NM_001039038)	145.0	NM_001357592	14755.0	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	5.71723130210865	5.80639214534006	5.71767630008942	5.77420857698681	5.64510159114006	5.7795241533489	-0.0379311276838928	0.901895031277763	0.977365418427752
Merged-chr10-81603022-4	chr10	81602508	81603508	+	974.7916869999999	f0_balb.idr|f0_c57.idr|f1_balb.idr|f1_c57bl6.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2108.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	2.73449661755679	2.69296803531015	2.97803140113959	2.68369239716603	2.75297749151237	2.87728297400055	-0.158538979267228	0.828584763978694	0.959833682782168